sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-2V-A95S-01 10 131761669 131761669 C T EBF3 Missense_Mutation p.E85K 0.40 deleterious(0.01) probably_damaging(0.984) TCGA-2V-A95S-01 10 1405746 1405746 G A ADARB2 Missense_Mutation p.A185V 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-2V-A95S-01 10 43869118 43869118 G T FXYD4 5'UTR 0.26 TCGA-2V-A95S-01 10 55581514 55581514 T A PCDH15 3'UTR 0.29 TCGA-2V-A95S-01 10 75561253 75561253 C T ZSWIM8 Silent p.L1835L 0.21 TCGA-2V-A95S-01 10 85982126 85982126 A G LRIT2 Silent p.D401D 0.36 TCGA-2V-A95S-01 11 103909294 103909294 C A DDI1 3'UTR 0.18 TCGA-2V-A95S-01 11 104776270 104776270 T G RP11-693N9.2 RNA 0.33 TCGA-2V-A95S-01 11 18266987 18266987 T C SAA2 Silent p.K102K 0.20 TCGA-2V-A95S-01 11 377314 377314 G A B4GALNT4 Missense_Mutation p.A731T 0.08 tolerated(0.09) unknown(0) TCGA-2V-A95S-01 11 61405258 61405258 A T RPLP0P2 RNA 0.24 TCGA-2V-A95S-01 11 63992060 63992060 T G TRPT1 Missense_Mutation p.I155L 0.21 deleterious(0.05) possibly_damaging(0.558) TCGA-2V-A95S-01 11 65715032 65715032 G A TSGA10IP RNA 0.15 TCGA-2V-A95S-01 11 76175034 76175034 C T C11orf30 Silent p.S247S 0.13 TCGA-2V-A95S-01 11 9830227 9830227 G A SBF2 Intron 0.31 TCGA-2V-A95S-01 12 114793370 114793370 A C TBX5 Silent p.V508V 0.38 TCGA-2V-A95S-01 12 75601373 75601373 C T KCNC2 Missense_Mutation p.G131R 0.33 deleterious(0) probably_damaging(1) TCGA-2V-A95S-01 13 110835346 110835346 G A COL4A1 Missense_Mutation p.P697S 0.24 probably_damaging(1) TCGA-2V-A95S-01 13 25433158 25433158 G T RNF17 Missense_Mutation p.M1210I 0.19 deleterious(0.01) possibly_damaging(0.708) TCGA-2V-A95S-01 14 101349210 101349210 A C RTL1 Missense_Mutation p.M639R 0.33 deleterious(0) probably_damaging(0.942) TCGA-2V-A95S-01 14 101533134 101533134 G A MIR656 RNA 0.12 TCGA-2V-A95S-01 14 106866578 106866578 G T IGHV3-38 Missense_Mutation p.A59D 0.13 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-2V-A95S-01 14 23504068 23504068 T C PSMB5 Missense_Mutation p.E8G 0.20 tolerated(0.48) benign(0.001) TCGA-2V-A95S-01 14 23815958 23815958 G A SLC22A17 Missense_Mutation p.R506W 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-2V-A95S-01 14 26939542 26939542 A C NOVA1 Intron 0.19 TCGA-2V-A95S-01 14 29236983 29236983 G A FOXG1 Silent p.G166G 0.21 TCGA-2V-A95S-01 14 64988788 64988796 TATTTGATG - ZBTB1 In_Frame_Del p.F190_V192del 0.17 TCGA-2V-A95S-01 14 77732506 77732506 C T NGB 3'UTR 0.12 TCGA-2V-A95S-01 14 89153622 89153622 G T EML5 Missense_Mutation p.S931Y 0.20 deleterious(0.05) benign(0.373) TCGA-2V-A95S-01 15 59466403 59466403 C G MYO1E Missense_Mutation p.D696H 0.24 tolerated(0.25) probably_damaging(0.919) TCGA-2V-A95S-01 15 68480341 68480341 A G PIAS1 3'UTR 0.29 TCGA-2V-A95S-01 15 75660853 75660889 GAGCGGCGACACGAACTTCTCCACCCGCTCCAGCGTG - MAN2C1 Frame_Shift_Del p.E15Pfs*23 0.15 TCGA-2V-A95S-01 15 94841718 94841718 A G MCTP2 Missense_Mutation p.Y75C 0.17 tolerated(0.16) possibly_damaging(0.566) TCGA-2V-A95S-01 16 51175368 51175368 C A SALL1 Missense_Mutation p.L255F 0.27 tolerated(0.08) probably_damaging(0.999) TCGA-2V-A95S-01 16 74524981 74524981 T A GLG1 Missense_Mutation p.H456L 0.05 tolerated(0.08) benign(0.425) TCGA-2V-A95S-01 16 9210886 9210886 G T C16orf72 3'UTR 0.32 TCGA-2V-A95S-01 17 27085738 27085738 T G FAM222B Missense_Mutation p.E413D 0.11 tolerated(0.07) probably_damaging(0.941) TCGA-2V-A95S-01 17 3118953 3118953 C G OR1A1 Missense_Mutation p.I13M 0.24 deleterious(0.01) benign(0.361) TCGA-2V-A95S-01 17 3300817 3300817 G A OR1E1 Silent p.D296D 0.23 TCGA-2V-A95S-01 17 43585464 43585464 G T LRRC37A4P 3'Flank 0.23 TCGA-2V-A95S-01 17 48263287 48263287 G A COL1A1 Missense_Mutation p.T1367I 0.19 unknown(0) TCGA-2V-A95S-01 17 63685338 63685338 T A CEP112 Splice_Site p.X870_splice 0.21 TCGA-2V-A95S-01 18 28720139 28720139 A T DSC1 Silent p.I462I 0.17 TCGA-2V-A95S-01 19 11411928 11411928 A T TSPAN16 Nonsense_Mutation p.R132* 0.16 TCGA-2V-A95S-01 19 11411929 11411929 G T TSPAN16 Missense_Mutation p.R132I 0.16 deleterious(0.01) possibly_damaging(0.827) TCGA-2V-A95S-01 19 11411930 11411930 A T TSPAN16 Missense_Mutation p.R132S 0.17 tolerated(0.09) possibly_damaging(0.455) TCGA-2V-A95S-01 19 4682753 4682753 T C DPP9 Missense_Mutation p.Y810C 0.23 deleterious(0) probably_damaging(0.977) TCGA-2V-A95S-01 19 47575379 47575379 C G ZC3H4 Splice_Site p.X601_splice 0.33 TCGA-2V-A95S-01 19 50373106 50373106 C T AKT1S1 3'UTR 0.18 TCGA-2V-A95S-01 19 52272999 52272999 C G FPR2 3'UTR 0.19 TCGA-2V-A95S-01 19 52659296 52659296 A T ZNF836 Missense_Mutation p.I547N 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-2V-A95S-01 19 57641665 57641665 G A USP29 Missense_Mutation p.C541Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-2V-A95S-01 19 9063485 9063485 G T MUC16 Silent p.S7987S 0.19 TCGA-2V-A95S-01 1 144857701 144857701 T C PDE4DIP Missense_Mutation p.D2118G 0.09 deleterious(0) probably_damaging(0.96) TCGA-2V-A95S-01 1 152538510 152538510 G A LCE3E Missense_Mutation p.R59C 0.15 tolerated_low_confidence(0.08) unknown(0) TCGA-2V-A95S-01 1 155851003 155851003 G T SYT11 Missense_Mutation p.V334L 0.45 tolerated(0.09) benign(0.008) TCGA-2V-A95S-01 1 155891652 155891652 C T KIAA0907 Missense_Mutation p.G338S 0.15 deleterious(0.03) probably_damaging(0.978) TCGA-2V-A95S-01 1 156021615 156021615 G A UBQLN4 Nonsense_Mutation p.Q48* 0.09 TCGA-2V-A95S-01 1 157497415 157497415 C A FCRL5 Missense_Mutation p.S651I 0.18 deleterious(0.04) possibly_damaging(0.823) TCGA-2V-A95S-01 1 157765893 157765893 A G FCRL1 Missense_Mutation p.M429T 0.09 deleterious(0) benign(0.021) TCGA-2V-A95S-01 1 15820444 15820444 C A CASP9 Silent p.L367L 0.42 TCGA-2V-A95S-01 1 161200931 161200931 C G NR1I3 Missense_Mutation p.A267P 0.14 tolerated(0.09) probably_damaging(0.981) TCGA-2V-A95S-01 1 175958611 175958611 G C RFWD2 Missense_Mutation p.H578Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-2V-A95S-01 1 201195085 201195085 G T IGFN1 Silent p.A3540A 0.26 TCGA-2V-A95S-01 1 207262708 207262708 T G C4BPB 5'UTR 0.21 TCGA-2V-A95S-01 1 237754162 237754162 G A RYR2 Missense_Mutation p.E1344K 0.12 benign(0.001) TCGA-2V-A95S-01 1 240370837 240370837 C T FMN2 Missense_Mutation p.P909S 0.16 unknown(0) TCGA-2V-A95S-01 1 243589807 243589807 A C SDCCAG8 Missense_Mutation p.E644D 0.18 tolerated(0.07) probably_damaging(0.962) TCGA-2V-A95S-01 1 245775173 245775173 A G KIF26B Missense_Mutation p.R665G 0.16 tolerated(0.38) unknown(0) TCGA-2V-A95S-01 1 245848850 245848850 C A KIF26B Silent p.S855S 0.06 TCGA-2V-A95S-01 1 27102134 27102134 C - ARID1A Frame_Shift_Del p.A1687Dfs*2 0.16 TCGA-2V-A95S-01 1 36786280 36786280 C T SH3D21 Silent p.L672L 0.19 TCGA-2V-A95S-01 1 37947212 37947212 C - ZC3H12A Frame_Shift_Del p.L199Cfs*32 0.13 TCGA-2V-A95S-01 1 38463418 38463418 C T FHL3 Missense_Mutation p.C209Y 0.23 deleterious(0) probably_damaging(0.99) TCGA-2V-A95S-01 1 76384589 76384589 G A ASB17 3'UTR 0.25 TCGA-2V-A95S-01 1 9101590 9101590 C T SLC2A5 Intron 0.29 TCGA-2V-A95S-01 1 94639375 94639375 T C ARHGAP29 3'UTR 0.18 TCGA-2V-A95S-01 20 34218877 34218877 T C CPNE1 Missense_Mutation p.N319S 0.22 deleterious(0.04) possibly_damaging(0.732) TCGA-2V-A95S-01 20 489229 489229 T C CSNK2A1 5'UTR 0.22 TCGA-2V-A95S-01 22 37462176 37462176 C T TMPRSS6 Missense_Mutation p.G794S 0.22 deleterious(0) probably_damaging(1) TCGA-2V-A95S-01 22 37482384 37482384 C T TMPRSS6 Silent p.K313K 0.24 TCGA-2V-A95S-01 22 41574171 41574171 G A EP300 Silent p.Q2152Q 0.23 TCGA-2V-A95S-01 2 120922447 120922447 T C EPB41L5 Silent p.S641S 0.27 TCGA-2V-A95S-01 2 1481106 1481106 C T TPO Silent p.L356L 0.23 TCGA-2V-A95S-01 2 175287757 175287757 G A SCRN3 Missense_Mutation p.G300E 0.23 deleterious(0.04) benign(0.209) TCGA-2V-A95S-01 2 178936399 178936399 T A PDE11A Nonsense_Mutation p.K256* 0.34 TCGA-2V-A95S-01 2 179479398 179479398 G A TTN Silent p.T16281T 0.31 TCGA-2V-A95S-01 2 179574397 179574397 A T TTN Missense_Mutation p.V9550E 0.22 TCGA-2V-A95S-01 2 183129032 183129032 T C PDE1A Missense_Mutation p.T71A 0.14 tolerated(0.1) possibly_damaging(0.607) TCGA-2V-A95S-01 2 191859857 191859857 C G STAT1 Missense_Mutation p.D292H 0.31 deleterious(0) probably_damaging(0.998) TCGA-2V-A95S-01 2 197541399 197541399 G T CCDC150 Missense_Mutation p.A462S 0.22 tolerated(0.29) benign(0.007) TCGA-2V-A95S-01 2 220099637 220099637 G T ANKZF1 Missense_Mutation p.V432L 0.23 deleterious(0.04) benign(0.02) TCGA-2V-A95S-01 2 223066070 223066070 A - PAX3 Intron 0.15 TCGA-2V-A95S-01 2 242135166 242135166 A G ANO7 Missense_Mutation p.Q126R 0.30 tolerated(0.39) benign(0.001) TCGA-2V-A95S-01 2 38546161 38546161 C T ATL2 Missense_Mutation p.D122N 0.16 tolerated(0.59) benign(0.005) TCGA-2V-A95S-01 2 39250230 39250230 C T SOS1 Missense_Mutation p.E447K 0.14 deleterious(0) possibly_damaging(0.798) TCGA-2V-A95S-01 2 62728333 62728333 A G TMEM17 3'UTR 0.05 TCGA-2V-A95S-01 2 73518428 73518428 G T EGR4 3'UTR 0.26 TCGA-2V-A95S-01 2 73518429 73518429 G T EGR4 3'UTR 0.25 TCGA-2V-A95S-01 3 123046605 123046605 G A ADCY5 Missense_Mutation p.R603C 0.23 deleterious(0) probably_damaging(0.998) TCGA-2V-A95S-01 3 14487226 14487226 T C SLC6A6 Silent p.G77G 0.27 TCGA-2V-A95S-01 3 188242487 188242487 G C LPP Missense_Mutation p.R114P 0.23 tolerated(0.2) probably_damaging(0.999) TCGA-2V-A95S-01 3 47555198 47555198 A G ELP6 5'UTR 0.20 TCGA-2V-A95S-01 3 49700756 49700756 A G BSN Missense_Mutation p.K3722R 0.17 unknown(0) TCGA-2V-A95S-01 3 78706316 78706316 C T ROBO1 Missense_Mutation p.S849N 0.25 deleterious(0.04) possibly_damaging(0.519) TCGA-2V-A95S-01 4 73931079 73931079 T G COX18 Silent p.R162R 0.04 TCGA-2V-A95S-01 4 74280813 74280813 G T ALB Missense_Mutation p.A374S 0.28 tolerated(0.07) possibly_damaging(0.631) TCGA-2V-A95S-01 4 90816240 90816240 C T MMRN1 Missense_Mutation p.P40S 0.20 tolerated_low_confidence(0.22) benign(0) TCGA-2V-A95S-01 5 1053548 1053548 C T SLC12A7 Missense_Mutation p.V1026I 0.18 deleterious(0.03) benign(0.116) TCGA-2V-A95S-01 5 132202636 132202636 G T UQCRQ Silent p.P21P 0.25 TCGA-2V-A95S-01 5 134870884 134870884 G A NEUROG1 Missense_Mutation p.P166L 0.31 tolerated(0.2) benign(0.032) TCGA-2V-A95S-01 5 140480872 140480872 C T PCDHB3 Silent p.T213T 0.19 TCGA-2V-A95S-01 5 141329103 141329103 G A PCDH12 Silent p.G1008G 0.25 TCGA-2V-A95S-01 5 171471887 171471887 T C STK10 Silent p.%3D 0.31 TCGA-2V-A95S-01 5 177548182 177548182 T A N4BP3 Silent p.A312A 0.19 TCGA-2V-A95S-01 5 83402637 83402637 G T EDIL3 Missense_Mutation p.P161T 0.17 tolerated(0.1) benign(0.276) TCGA-2V-A95S-01 6 127837105 127837105 A G SOGA3 Missense_Mutation p.S219P 0.14 tolerated_low_confidence(0.15) benign(0.307) TCGA-2V-A95S-01 6 146755735 146755735 G T GRM1 Missense_Mutation p.D1130Y 0.16 deleterious_low_confidence(0.01) benign(0.285) TCGA-2V-A95S-01 6 27783152 27783152 G A HIST1H2BM Missense_Mutation p.A111T 0.13 tolerated_low_confidence(0.06) benign(0.101) TCGA-2V-A95S-01 6 29430083 29430083 C T OR2H1 Silent p.V179V 0.23 TCGA-2V-A95S-01 6 43484637 43484637 C T YIPF3 5'UTR 0.32 TCGA-2V-A95S-01 6 43514395 43514395 C G XPO5 Missense_Mutation p.G752A 0.23 tolerated(0.09) probably_damaging(0.977) TCGA-2V-A95S-01 6 49399282 49399282 T C MUT 3'UTR 0.29 TCGA-2V-A95S-01 6 6225010 6225010 A T F13A1 Silent p.T294T 0.18 TCGA-2V-A95S-01 6 87964507 87964507 G A ZNF292 Missense_Mutation p.R387H 0.29 deleterious(0) probably_damaging(0.998) TCGA-2V-A95S-01 6 97676991 97676991 G T MMS22L Missense_Mutation p.F606L 0.20 deleterious(0) probably_damaging(0.979) TCGA-2V-A95S-01 6 99286161 99286161 C T POU3F2 3'UTR 0.31 TCGA-2V-A95S-01 7 107431676 107431676 C T SLC26A3 Silent p.P129P 0.21 TCGA-2V-A95S-01 7 158449049 158449049 A G NCAPG2 Missense_Mutation p.I764T 0.25 tolerated(0.13) benign(0.048) TCGA-2V-A95S-01 7 4815367 4815367 G C AP5Z1 Missense_Mutation p.E7D 0.21 deleterious(0.02) possibly_damaging(0.604) TCGA-2V-A95S-01 7 72418914 72418914 A G POM121 Missense_Mutation p.N969D 0.26 tolerated_low_confidence(0.44) unknown(0) TCGA-2V-A95S-01 7 77010640 77010640 T C GSAP Silent p.Q186Q 0.25 TCGA-2V-A95S-01 7 77998508 77998508 T C MAGI2 Silent p.K356K 0.23 TCGA-2V-A95S-01 7 79846776 79846776 A G GNAI1 Missense_Mutation p.I344M 0.20 deleterious(0.04) possibly_damaging(0.552) TCGA-2V-A95S-01 8 116427157 116427157 T C TRPS1 Silent p.L993L 0.13 TCGA-2V-A95S-01 8 131861908 131861908 G T ADCY8 Silent p.A784A 0.17 TCGA-2V-A95S-01 8 139163633 139163633 C T FAM135B Missense_Mutation p.E1029K 0.34 deleterious(0) probably_damaging(0.928) TCGA-2V-A95S-01 8 30539480 30539480 G A GSR Missense_Mutation p.H418Y 0.24 deleterious(0) probably_damaging(1) TCGA-2V-A95S-01 8 42911566 42911566 C G FNTA Missense_Mutation p.P26R 0.34 deleterious_low_confidence(0.03) unknown(0) TCGA-2V-A95S-01 9 106864749 106864749 G T SMC2 Missense_Mutation p.E305D 0.26 tolerated(0.17) benign(0.022) TCGA-2V-A95S-01 9 111739250 111739250 T A CTNNAL1 Nonsense_Mutation p.K394* 0.23 TCGA-2V-A95S-01 9 32632921 32632921 T C TAF1L Missense_Mutation p.D886G 0.18 deleterious(0.02) benign(0.241) TCGA-2V-A95S-01 9 32784868 32784868 G A TMEM215 Nonsense_Mutation p.W229* 0.25 TCGA-2V-A95S-01 9 88692475 88692475 C A GOLM1 Missense_Mutation p.R54L 0.22 deleterious(0) benign(0.016) TCGA-2V-A95S-01 X 128694557 128694557 C A OCRL Silent p.G251G 0.29 TCGA-2V-A95S-01 X 152954021 152954021 G A SLC6A8 5'UTR 0.26 TCGA-2V-A95S-01 X 34148187 34148187 T C FAM47A Missense_Mutation p.I737V 0.37 deleterious(0.02) possibly_damaging(0.658) TCGA-2Y-A9GS-01 10 102020773 102020773 C G CWF19L1 Missense_Mutation p.G46A 0.58 tolerated(0.05) benign(0.27) TCGA-2Y-A9GS-01 10 17363216 17363216 C G ST8SIA6 Silent p.T286T 0.39 TCGA-2Y-A9GS-01 10 7212949 7212949 C T SFMBT2 Missense_Mutation p.V829M 0.32 deleterious(0) probably_damaging(1) TCGA-2Y-A9GS-01 11 4824698 4824698 T C OR52R1 Missense_Mutation p.R305G 0.37 deleterious(0.01) benign(0.423) TCGA-2Y-A9GS-01 11 61113934 61113934 G T DAK Missense_Mutation p.A563S 0.54 deleterious(0.03) unknown(0) TCGA-2Y-A9GS-01 11 64567661 64567661 G A MAP4K2 Missense_Mutation p.R279W 0.17 deleterious(0.03) possibly_damaging(0.642) TCGA-2Y-A9GS-01 11 7091576 7091576 G A NLRP14 Missense_Mutation p.C1012Y 0.36 tolerated(1) benign(0.009) TCGA-2Y-A9GS-01 12 104337556 104337556 C A HSP90B1 Missense_Mutation p.P644Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9GS-01 12 52681039 52681039 C T KRT81 Missense_Mutation p.R365H 0.23 tolerated(0.07) possibly_damaging(0.896) TCGA-2Y-A9GS-01 12 53072520 53072520 C T KRT1 Silent p.Q204Q 0.42 TCGA-2Y-A9GS-01 12 56995571 56995571 T C BAZ2A Missense_Mutation p.H1279R 0.27 tolerated(0.49) benign(0.046) TCGA-2Y-A9GS-01 14 92621491 92621491 G T CPSF2 Missense_Mutation p.E422D 0.08 tolerated(0.41) benign(0.001) TCGA-2Y-A9GS-01 15 27216535 27216535 G T GABRG3 5'UTR 0.22 TCGA-2Y-A9GS-01 15 41476594 41476594 A G EXD1 Silent p.F360F 0.13 TCGA-2Y-A9GS-01 15 52486024 52486024 A T MYO5C 3'UTR 0.11 TCGA-2Y-A9GS-01 15 85634396 85634396 G T PDE8A Missense_Mutation p.C279F 0.28 tolerated(0.7) possibly_damaging(0.591) TCGA-2Y-A9GS-01 16 50104098 50104098 G T HEATR3 Nonsense_Mutation p.G137* 0.31 TCGA-2Y-A9GS-01 16 50104099 50104099 G T HEATR3 Missense_Mutation p.G137V 0.31 deleterious(0.02) benign(0.442) TCGA-2Y-A9GS-01 16 731861 731892 CCTGCATTGAGGCCAAGCACGTGAGGGTGCCC - STUB1 Splice_Site p.X199_splice 0.29 TCGA-2Y-A9GS-01 16 90095872 90095872 T G C16orf3 5'UTR 0.37 TCGA-2Y-A9GS-01 17 40556985 40556985 C T PTRF Missense_Mutation p.R298H 0.10 deleterious(0.01) probably_damaging(0.984) TCGA-2Y-A9GS-01 17 7577534 7577534 C A TP53 Missense_Mutation p.R249S 0.47 deleterious(0) probably_damaging(0.994) TCGA-2Y-A9GS-01 17 79092088 79092088 T G AATK 3'UTR 0.32 TCGA-2Y-A9GS-01 17 79093297 79093297 C T AATK Missense_Mutation p.A1323T 0.29 tolerated(0.46) benign(0.002) TCGA-2Y-A9GS-01 18 45555810 45555810 G A ZBTB7C Missense_Mutation p.R561C 0.36 deleterious_low_confidence(0.04) benign(0) TCGA-2Y-A9GS-01 18 6138227 6138227 G A L3MBTL4 Missense_Mutation p.H389Y 0.05 deleterious(0) probably_damaging(0.996) TCGA-2Y-A9GS-01 19 10602490 10602514 CTCCGCGGCACCTGCAGGTCCGCCA - KEAP1 Frame_Shift_Del p.L355Sfs*37 0.56 TCGA-2Y-A9GS-01 19 14627395 14627395 G T DNAJB1 Missense_Mutation p.D225E 0.28 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9GS-01 19 14785661 14785661 C A EMR3 5'UTR 0.12 TCGA-2Y-A9GS-01 19 40885567 40885567 G T HIPK4 Missense_Mutation p.P593H 0.13 deleterious_low_confidence(0) benign(0.007) TCGA-2Y-A9GS-01 19 54849337 54849337 C A LILRA4 Missense_Mutation p.K175N 0.40 tolerated(0.06) benign(0.21) TCGA-2Y-A9GS-01 1 156640363 156640363 C A NES Missense_Mutation p.G1206V 0.33 deleterious(0) possibly_damaging(0.856) TCGA-2Y-A9GS-01 1 157559113 157559113 C A FCRL4 Missense_Mutation p.W63L 0.32 tolerated(0.65) benign(0.026) TCGA-2Y-A9GS-01 1 158909466 158909466 C A PYHIN1 Intron 0.31 TCGA-2Y-A9GS-01 1 165386442 165386442 A G RXRG Missense_Mutation p.V153A 0.32 deleterious(0.04) probably_damaging(0.998) TCGA-2Y-A9GS-01 1 176918372 176918372 A C ASTN1 Missense_Mutation p.M668R 0.08 deleterious(0.01) benign(0.101) TCGA-2Y-A9GS-01 1 226822232 226822232 A C ITPKB 3'UTR 0.48 TCGA-2Y-A9GS-01 1 228506637 228506637 C A OBSCN Silent p.P5685P 0.29 TCGA-2Y-A9GS-01 1 64669583 64669583 C G UBE2U 5'UTR 0.45 TCGA-2Y-A9GS-01 1 6524730 6524730 A G TNFRSF25 Silent p.C115C 0.10 TCGA-2Y-A9GS-01 1 82302739 82302739 G A LPHN2 Missense_Mutation p.E24K 0.15 tolerated(0.32) benign(0.001) TCGA-2Y-A9GS-01 1 90473296 90473296 G T ZNF326 Missense_Mutation p.G201V 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-2Y-A9GS-01 20 61510865 61510865 T C DIDO1 Missense_Mutation p.D2148G 0.32 benign(0.265) TCGA-2Y-A9GS-01 21 31798109 31798109 C A KRTAP13-3 Missense_Mutation p.C41F 0.19 tolerated(0.11) possibly_damaging(0.616) TCGA-2Y-A9GS-01 21 35467629 35467629 C T SLC5A3 Silent p.R44R 0.35 TCGA-2Y-A9GS-01 21 37617781 37617781 A T DOPEY2 Missense_Mutation p.E1168V 0.36 deleterious(0.04) benign(0.322) TCGA-2Y-A9GS-01 21 37617797 37617797 G T DOPEY2 Silent p.G1173G 0.47 TCGA-2Y-A9GS-01 22 31494787 31494787 A G SMTN Missense_Mutation p.K765R 0.19 tolerated(0.05) probably_damaging(0.999) TCGA-2Y-A9GS-01 2 135075151 135075151 A G MGAT5 Missense_Mutation p.Y153C 0.31 deleterious(0) possibly_damaging(0.757) TCGA-2Y-A9GS-01 2 160708822 160708822 T A LY75-CD302 Nonsense_Mutation p.K925* 0.32 TCGA-2Y-A9GS-01 2 179474818 179474818 C A TTN Missense_Mutation p.K17145N 0.40 TCGA-2Y-A9GS-01 2 179478476 179478476 A T TTN Splice_Site p.X16511_splice 0.05 TCGA-2Y-A9GS-01 2 197948210 197948210 G A ANKRD44 Missense_Mutation p.A422V 0.43 deleterious(0) benign(0.053) TCGA-2Y-A9GS-01 2 219268014 219268014 T G CTDSP1 Missense_Mutation p.F177L 0.41 deleterious(0) probably_damaging(0.992) TCGA-2Y-A9GS-01 2 220167459 220167459 G A PTPRN Missense_Mutation p.P160S 0.30 tolerated(0.17) benign(0.081) TCGA-2Y-A9GS-01 2 65309718 65309718 A C CEP68 Missense_Mutation p.E718A 0.24 deleterious(0) probably_damaging(0.968) TCGA-2Y-A9GS-01 2 75881940 75881940 A G MRPL19 Missense_Mutation p.D185G 0.28 deleterious(0.05) benign(0.068) TCGA-2Y-A9GS-01 2 89442546 89442546 G T IGKV3-20 Missense_Mutation p.P16T 0.32 tolerated(0.07) probably_damaging(1) TCGA-2Y-A9GS-01 3 150903129 150903129 G A MED12L Missense_Mutation p.D503N 0.09 deleterious(0.03) possibly_damaging(0.851) TCGA-2Y-A9GS-01 3 190362044 190362045 - C IL1RAP Frame_Shift_Ins p.R355Kfs*43 0.22 TCGA-2Y-A9GS-01 3 33725916 33725916 C G CLASP2 Missense_Mutation p.E193D 0.41 tolerated(0.39) benign(0.028) TCGA-2Y-A9GS-01 3 69230791 69230791 C T FRMD4B Missense_Mutation p.E704K 0.34 deleterious(0) possibly_damaging(0.616) TCGA-2Y-A9GS-01 4 174213266 174213266 T C GALNT7 Missense_Mutation p.Y199H 0.56 tolerated(0.57) benign(0.011) TCGA-2Y-A9GS-01 4 46043212 46043212 C T GABRG1 Silent p.P397P 0.45 TCGA-2Y-A9GS-01 4 74283353 74283360 TGAAGCAA - ALB Frame_Shift_Del p.E466Kfs*21 0.49 TCGA-2Y-A9GS-01 5 121759066 121759066 C A SNCAIP Missense_Mutation p.P212T 0.14 deleterious(0) possibly_damaging(0.864) TCGA-2Y-A9GS-01 5 126734452 126734452 C A MEGF10 Missense_Mutation p.H248Q 0.28 tolerated(0.18) benign(0.403) TCGA-2Y-A9GS-01 5 135188365 135188365 C T SLC25A48 Silent p.C92C 0.36 TCGA-2Y-A9GS-01 5 137420203 137420203 C T WNT8A Missense_Mutation p.T40M 0.37 tolerated(0.13) probably_damaging(0.923) TCGA-2Y-A9GS-01 5 140755818 140755818 G A PCDHGA6 Missense_Mutation p.R723H 0.36 tolerated_low_confidence(0.16) benign(0.009) TCGA-2Y-A9GS-01 5 17275720 17275720 G A BASP1 Missense_Mutation p.S132N 0.42 tolerated(0.23) unknown(0) TCGA-2Y-A9GS-01 5 174869971 174869971 G C DRD1 Silent p.V44V 0.39 TCGA-2Y-A9GS-01 5 31983276 31983276 G A PDZD2 Silent p.Q164Q 0.32 TCGA-2Y-A9GS-01 5 64064973 64064973 G C CWC27 5'UTR 0.27 TCGA-2Y-A9GS-01 5 83433153 83433153 A C EDIL3 Silent p.V125V 0.35 TCGA-2Y-A9GS-01 6 107475656 107475656 G C PDSS2 3'UTR 0.56 TCGA-2Y-A9GS-01 6 138613011 138613012 - G KIAA1244 Frame_Shift_Ins p.E1064Gfs*63 0.23 TCGA-2Y-A9GS-01 6 161085258 161085258 C T LPA 5'UTR 0.24 TCGA-2Y-A9GS-01 6 55216306 55216306 C G GFRAL Missense_Mutation p.T209R 0.37 deleterious(0.02) benign(0.004) TCGA-2Y-A9GS-01 6 83881733 83881733 A T PGM3 Missense_Mutation p.L458M 0.32 deleterious(0) probably_damaging(1) TCGA-2Y-A9GS-01 7 107696204 107696204 G A LAMB4 Silent p.L1210L 0.14 TCGA-2Y-A9GS-01 7 12414718 12414718 C G VWDE Missense_Mutation p.G387A 0.03 deleterious(0.01) probably_damaging(0.982) TCGA-2Y-A9GS-01 7 148700237 148700237 A C PDIA4 3'UTR 0.41 TCGA-2Y-A9GS-01 7 48626793 48626793 C T ABCA13 Missense_Mutation p.A4850V 0.35 benign(0.007) TCGA-2Y-A9GS-01 7 56119505 56119505 A G CCT6A 5'UTR 0.30 TCGA-2Y-A9GS-01 7 97863212 97863212 A C TECPR1 Missense_Mutation p.F398C 0.17 deleterious(0.01) benign(0.03) TCGA-2Y-A9GS-01 8 107773510 107773510 G T ABRA Missense_Mutation p.R301S 0.43 deleterious(0) benign(0.271) TCGA-2Y-A9GS-01 8 145150769 145150769 C G CYC1 Missense_Mutation p.R55G 0.31 tolerated(0.26) benign(0.009) TCGA-2Y-A9GS-01 8 72127663 72127663 A T EYA1 Missense_Mutation p.I519N 0.31 tolerated(0.46) possibly_damaging(0.843) TCGA-2Y-A9GS-01 8 95262710 95262710 C T GEM Missense_Mutation p.R240H 0.40 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9GS-01 9 2192840 2192840 A G SMARCA2 3'UTR 0.47 TCGA-2Y-A9GS-01 9 2192909 2192909 A C SMARCA2 3'UTR 0.44 TCGA-2Y-A9GS-01 9 4664382 4664382 G A PPAPDC2 3'UTR 0.45 TCGA-2Y-A9GS-01 X 153556300 153556300 G A TKTL1 Silent p.P538P 0.70 TCGA-2Y-A9GS-01 X 41333142 41333142 C T NYX Missense_Mutation p.R146C 0.05 deleterious(0) probably_damaging(0.927) TCGA-2Y-A9GT-01 10 19787512 19787512 G T MALRD1 Missense_Mutation p.D1132Y 0.23 deleterious(0.03) probably_damaging(0.991) TCGA-2Y-A9GT-01 10 21178791 21178791 C A NEBL Missense_Mutation p.G81C 0.20 deleterious(0.02) possibly_damaging(0.854) TCGA-2Y-A9GT-01 10 468861 468861 G A DIP2C Silent p.H169H 0.29 TCGA-2Y-A9GT-01 10 70715894 70715894 G T DDX21 5'UTR 0.06 TCGA-2Y-A9GT-01 11 119508882 119508883 - G RP11-196E1.3 Intron 0.26 TCGA-2Y-A9GT-01 11 128868356 128868356 T C ARHGAP32 Silent p.K337K 0.20 TCGA-2Y-A9GT-01 11 55135909 55135909 T C OR4A15 Missense_Mutation p.S184P 0.29 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-2Y-A9GT-01 11 58126247 58126247 A G OR5B17 Missense_Mutation p.M99T 0.25 deleterious_low_confidence(0) benign(0.38) TCGA-2Y-A9GT-01 11 6662511 6662511 G A DCHS1 Missense_Mutation p.R112W 0.06 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9GT-01 11 67220097 67220097 C A GPR152 Silent p.T33T 0.28 TCGA-2Y-A9GT-01 11 75907729 75907729 C T WNT11 Silent p.L39L 0.24 TCGA-2Y-A9GT-01 11 850322 850322 C T TSPAN4 Silent p.L6L 0.19 TCGA-2Y-A9GT-01 12 10573090 10573090 C G KLRC3 Missense_Mutation p.Q20H 0.17 deleterious(0.03) benign(0.367) TCGA-2Y-A9GT-01 12 10588526 10588526 C G KLRC2 Missense_Mutation p.Q20H 0.19 deleterious(0.04) benign(0.303) TCGA-2Y-A9GT-01 12 120213641 120213641 G C CIT Missense_Mutation p.I630M 0.30 tolerated(0.32) benign(0.003) TCGA-2Y-A9GT-01 12 130926753 130926753 G T RIMBP2 Missense_Mutation p.R365S 0.30 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9GT-01 12 38710750 38710750 G C ALG10B Missense_Mutation p.V19L 0.36 tolerated(0.36) benign(0.003) TCGA-2Y-A9GT-01 12 39087558 39087558 T C CPNE8 Silent p.G348G 0.32 TCGA-2Y-A9GT-01 12 5153915 5153915 G C KCNA5 Missense_Mutation p.R201P 0.31 deleterious(0.01) probably_damaging(0.964) TCGA-2Y-A9GT-01 12 75807475 75807475 C T GLIPR1L2 Missense_Mutation p.A193V 0.30 tolerated(0.05) possibly_damaging(0.813) TCGA-2Y-A9GT-01 12 81007565 81007565 G A PTPRQ Missense_Mutation p.V1701I 0.32 tolerated(0.33) benign(0.007) TCGA-2Y-A9GT-01 13 42873655 42873655 A G AKAP11 Missense_Mutation p.H258R 0.28 tolerated(0.36) benign(0.003) TCGA-2Y-A9GT-01 14 34145492 34145492 A C NPAS3 Missense_Mutation p.M212L 0.31 tolerated(0.64) benign(0.03) TCGA-2Y-A9GT-01 14 37050361 37050361 A C NKX2-8 Missense_Mutation p.S156A 0.26 tolerated(0.83) benign(0.001) TCGA-2Y-A9GT-01 14 50092384 50092384 T C DNAAF2 Missense_Mutation p.N797S 0.20 tolerated(0.25) benign(0.01) TCGA-2Y-A9GT-01 15 40588548 40588548 G A PLCB2 Silent p.L549L 0.23 TCGA-2Y-A9GT-01 15 41280125 41280125 G - INO80 Frame_Shift_Del p.M1207Wfs*7 0.19 TCGA-2Y-A9GT-01 15 43749411 43749411 A T TP53BP1 Silent p.I465I 0.29 TCGA-2Y-A9GT-01 15 77750751 77750751 T G HMG20A Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0) benign(0.346) TCGA-2Y-A9GT-01 15 83781634 83781634 C A TM6SF1 Silent p.R60R 0.23 TCGA-2Y-A9GT-01 15 86800184 86800184 G T AGBL1 Missense_Mutation p.S233I 0.24 tolerated(0.13) benign(0.298) TCGA-2Y-A9GT-01 16 2042999 2042999 G C SYNGR3 Missense_Mutation p.E206Q 0.23 deleterious(0.01) possibly_damaging(0.839) TCGA-2Y-A9GT-01 16 3017364 3017364 G T KREMEN2 Silent p.S339S 0.33 TCGA-2Y-A9GT-01 16 32266492 32266492 C T TP53TG3D 3'UTR 0.14 TCGA-2Y-A9GT-01 16 67916488 67916488 A G EDC4 Missense_Mutation p.T1145A 0.29 deleterious(0.01) possibly_damaging(0.831) TCGA-2Y-A9GT-01 16 71963537 71963537 A G IST1 3'Flank 0.32 TCGA-2Y-A9GT-01 17 41056030 41056030 T C G6PC Missense_Mutation p.F105L 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-2Y-A9GT-01 17 72999276 72999276 A T CDR2L Splice_Site p.X169_splice 0.28 TCGA-2Y-A9GT-01 18 10454941 10454941 G C APCDD1 5'UTR 0.34 TCGA-2Y-A9GT-01 19 2877815 2877815 T A ZNF556 Missense_Mutation p.Y287N 0.32 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9GT-01 19 2986843 2986843 A G TLE6 Missense_Mutation p.Q80R 0.31 tolerated(0.33) possibly_damaging(0.607) TCGA-2Y-A9GT-01 19 33355006 33355008 GGC - SLC7A9 In_Frame_Del p.A158del 0.32 TCGA-2Y-A9GT-01 19 47960478 47960478 C T SLC8A2 Missense_Mutation p.R350H 0.21 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9GT-01 19 54756264 54756264 G T LILRB5 Missense_Mutation p.A514D 0.17 deleterious(0) benign(0.009) TCGA-2Y-A9GT-01 19 55815039 55815039 C T BRSK1 Silent p.P377P 0.26 TCGA-2Y-A9GT-01 1 12082273 12082273 C T MIIP Missense_Mutation p.A79V 0.31 tolerated(0.23) benign(0.134) TCGA-2Y-A9GT-01 1 151105214 151105214 C T SEMA6C Missense_Mutation p.G879S 0.31 tolerated_low_confidence(0.06) probably_damaging(0.935) TCGA-2Y-A9GT-01 1 16767319 16767319 C T NECAP2 Silent p.I21I 0.18 TCGA-2Y-A9GT-01 1 186295267 186295267 C T TPR Missense_Mutation p.G1997D 0.17 benign(0.021) TCGA-2Y-A9GT-01 1 216680527 216680527 T A ESRRG Splice_Site p.X390_splice 0.27 TCGA-2Y-A9GT-01 1 216737654 216737654 C T ESRRG Missense_Mutation p.V269I 0.28 tolerated(0.45) benign(0.004) TCGA-2Y-A9GT-01 1 232575016 232575016 A G SIPA1L2 Missense_Mutation p.I1290T 0.24 tolerated(0.46) benign(0.001) TCGA-2Y-A9GT-01 1 247263872 247263872 C T ZNF669 Missense_Mutation p.S400N 0.31 tolerated(0.26) possibly_damaging(0.598) TCGA-2Y-A9GT-01 1 37941375 37941375 A G ZC3H12A Missense_Mutation p.E93G 0.23 tolerated(0.07) benign(0.017) TCGA-2Y-A9GT-01 1 37959674 37959674 T A MEAF6 3'UTR 0.27 TCGA-2Y-A9GT-01 1 55118680 55118680 G A MROH7 Silent p.P27P 0.36 TCGA-2Y-A9GT-01 1 67559203 67559203 G T C1orf141 Missense_Mutation p.H230N 0.05 deleterious(0.02) possibly_damaging(0.607) TCGA-2Y-A9GT-01 1 86954813 86954813 C T CLCA1 Silent p.P439P 0.24 TCGA-2Y-A9GT-01 1 9661209 9661209 G T TMEM201 Missense_Mutation p.R218L 0.24 deleterious(0.01) possibly_damaging(0.877) TCGA-2Y-A9GT-01 1 98165096 98165096 T G DPYD Missense_Mutation p.K164T 0.23 deleterious(0.01) possibly_damaging(0.835) TCGA-2Y-A9GT-01 20 25319898 25319898 G A ABHD12 Missense_Mutation p.P94L 0.26 deleterious(0) probably_damaging(0.995) TCGA-2Y-A9GT-01 20 42164801 42164808 TGCCTCTC - L3MBTL1 Frame_Shift_Del p.C642Rfs*6 0.20 TCGA-2Y-A9GT-01 20 62200283 62200283 C T HELZ2 Silent p.A386A 0.29 TCGA-2Y-A9GT-01 21 31986208 31986208 A G KRTAP6-1 Missense_Mutation p.Y6H 0.34 unknown(0) TCGA-2Y-A9GT-01 21 41239392 41239392 T A PCP4 5'UTR 0.20 TCGA-2Y-A9GT-01 21 43621827 43621827 C A ABCG1 Nonsense_Mutation p.C14* 0.24 TCGA-2Y-A9GT-01 22 16256584 16256584 T G POTEH 3'UTR 0.07 TCGA-2Y-A9GT-01 22 20929491 20929491 T A MED15 Missense_Mutation p.I415N 0.20 tolerated_low_confidence(0.06) unknown(0) TCGA-2Y-A9GT-01 22 21140349 21140349 G T SERPIND1 Missense_Mutation p.E407D 0.35 tolerated(0.38) benign(0.002) TCGA-2Y-A9GT-01 22 22842186 22842186 C A ZNF280B Missense_Mutation p.G513V 0.30 deleterious(0) possibly_damaging(0.704) TCGA-2Y-A9GT-01 22 46776800 46776800 T C CELSR1 Missense_Mutation p.S2381G 0.22 tolerated(0.07) possibly_damaging(0.61) TCGA-2Y-A9GT-01 22 50874856 50874856 C A PPP6R2 Missense_Mutation p.T527K 0.23 deleterious(0) possibly_damaging(0.884) TCGA-2Y-A9GT-01 2 106497846 106497846 G A NCK2 Missense_Mutation p.A97T 0.42 tolerated(0.58) benign(0.028) TCGA-2Y-A9GT-01 2 121745883 121745883 T C GLI2 Missense_Mutation p.M798T 0.27 tolerated(0.13) benign(0.001) TCGA-2Y-A9GT-01 2 149227600 149227600 T G MBD5 Missense_Mutation p.F696L 0.40 tolerated(1) benign(0.294) TCGA-2Y-A9GT-01 2 220167512 220167512 A G PTPRN Missense_Mutation p.L142S 0.22 tolerated(0.47) benign(0.002) TCGA-2Y-A9GT-01 2 225630405 225630405 T C DOCK10 3'UTR 0.28 TCGA-2Y-A9GT-01 2 98779440 98779440 G A VWA3B Splice_Site p.X372_splice 0.30 TCGA-2Y-A9GT-01 3 111312572 111312572 C A ZBED2 Missense_Mutation p.E159D 0.23 tolerated(0.08) benign(0.008) TCGA-2Y-A9GT-01 3 112997621 112997621 C T BOC Missense_Mutation p.R602C 0.35 deleterious(0) probably_damaging(0.992) TCGA-2Y-A9GT-01 3 142272131 142272131 C T ATR Missense_Mutation p.V915I 0.21 deleterious(0.01) benign(0.04) TCGA-2Y-A9GT-01 3 143708710 143708710 C T C3orf58 3'UTR 0.29 TCGA-2Y-A9GT-01 3 196669399 196669399 C T NCBP2 5'UTR 0.07 TCGA-2Y-A9GT-01 3 197354690 197354690 C T AC024560.3 RNA 0.19 TCGA-2Y-A9GT-01 3 37033593 37033593 C T EPM2AIP1 Missense_Mutation p.E326K 0.22 tolerated(0.12) possibly_damaging(0.794) TCGA-2Y-A9GT-01 3 47046579 47046579 A C NBEAL2 Silent p.R2138R 0.18 TCGA-2Y-A9GT-01 3 51284221 51284221 A G DOCK3 Missense_Mutation p.I723V 0.26 deleterious(0.01) benign(0.194) TCGA-2Y-A9GT-01 4 100756800 100756800 C T DAPP1 Missense_Mutation p.T41I 0.31 deleterious(0) possibly_damaging(0.73) TCGA-2Y-A9GT-01 4 155670346 155670346 A C LRAT 3'UTR 0.21 TCGA-2Y-A9GT-01 4 69519871 69519871 A T UGT2B15 Missense_Mutation p.D399E 0.04 tolerated(0.22) benign(0.039) TCGA-2Y-A9GT-01 4 76489697 76489697 T C C4orf26 Missense_Mutation p.F162S 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.504) TCGA-2Y-A9GT-01 4 90857805 90857805 G T MMRN1 Missense_Mutation p.G992C 0.19 deleterious(0.03) possibly_damaging(0.838) TCGA-2Y-A9GT-01 5 143853667 143853667 A T KCTD16 Missense_Mutation p.Y426F 0.26 deleterious(0) probably_damaging(0.985) TCGA-2Y-A9GT-01 5 169496161 169496161 T A DOCK2 Nonsense_Mutation p.Y1555* 0.23 TCGA-2Y-A9GT-01 5 174156604 174156604 G T MSX2 3'UTR 0.24 TCGA-2Y-A9GT-01 5 66461632 66461632 G T MAST4 Missense_Mutation p.D2209Y 0.26 probably_damaging(0.994) TCGA-2Y-A9GT-01 6 127834064 127834064 A G SOGA3 Missense_Mutation p.L486S 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-2Y-A9GT-01 6 26377013 26377013 G C BTN3A2 3'UTR 0.37 TCGA-2Y-A9GT-01 6 42236802 42236802 G T TRERF1 Missense_Mutation p.A176D 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.497) TCGA-2Y-A9GT-01 6 74227933 74227933 C A EEF1A1 Missense_Mutation p.D362Y 0.20 deleterious_low_confidence(0.02) probably_damaging(0.989) TCGA-2Y-A9GT-01 6 96657707 96657707 C T FUT9 3'UTR 0.22 TCGA-2Y-A9GT-01 7 99654854 99654854 G T ZSCAN21 Missense_Mutation p.R75S 0.32 deleterious(0.01) possibly_damaging(0.527) TCGA-2Y-A9GT-01 8 125565324 125565324 G - MTSS1 Frame_Shift_Del p.P726Hfs*7 0.15 TCGA-2Y-A9GT-01 8 3245023 3245023 G T CSMD1 Missense_Mutation p.S925R 0.26 probably_damaging(0.97) TCGA-2Y-A9GT-01 8 68087747 68087747 G A CSPP1 Intron 0.30 TCGA-2Y-A9GT-01 9 101759271 101759271 T G COL15A1 Missense_Mutation p.F287C 0.24 tolerated(0.19) benign(0.054) TCGA-2Y-A9GT-01 9 114476836 114476836 T A C9orf84 Missense_Mutation p.R704S 0.23 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9GT-01 9 114905792 114905792 G A SUSD1 Missense_Mutation p.P162L 0.32 deleterious(0.02) possibly_damaging(0.872) TCGA-2Y-A9GT-01 9 128206874 128206874 T C MAPKAP1 Missense_Mutation p.H450R 0.28 tolerated(0.55) benign(0.173) TCGA-2Y-A9GT-01 9 140669567 140669567 C T EHMT1 Missense_Mutation p.R552W 0.26 deleterious(0.02) possibly_damaging(0.871) TCGA-2Y-A9GT-01 9 17298507 17298507 A G CNTLN Intron 0.20 TCGA-2Y-A9GT-01 9 37495240 37495240 G T POLR1E Missense_Mutation p.A208S 0.05 tolerated(0.33) benign(0.015) TCGA-2Y-A9GT-01 9 4662813 4662813 G T PPAPDC2 Missense_Mutation p.W146C 0.27 deleterious(0) possibly_damaging(0.855) TCGA-2Y-A9GT-01 9 84532899 84532899 G T SPATA31D5P RNA 0.24 TCGA-2Y-A9GT-01 9 91606079 91606079 A G C9orf47 Missense_Mutation p.S57G 0.23 tolerated_low_confidence(0.42) benign(0.294) TCGA-2Y-A9GT-01 X 100871590 100871590 C A ARMCX6 Silent p.V7V 0.41 TCGA-2Y-A9GT-01 X 102192993 102192993 C T RAB40AL Silent p.H249H 0.26 TCGA-2Y-A9GT-01 X 115577963 115577963 A G SLC6A14 Silent p.R282R 0.41 TCGA-2Y-A9GT-01 X 22291149 22291149 A G ZNF645 Missense_Mutation p.N14S 0.55 tolerated(0.57) benign(0.063) TCGA-2Y-A9GT-01 X 45017000 45017000 A G CXorf36 Missense_Mutation p.L211P 0.52 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9GT-01 X 49840465 49840465 T A CLCN5 Nonsense_Mutation p.L144* 0.49 TCGA-2Y-A9GT-01 X 54496732 54496732 C A FGD1 Missense_Mutation p.R273L 0.08 tolerated(0.13) benign(0.007) TCGA-2Y-A9GT-01 X 70643062 70643062 C T TAF1 Silent p.V1536V 0.39 TCGA-2Y-A9GU-01 10 102048125 102048125 T C PKD2L1 3'UTR 0.06 TCGA-2Y-A9GU-01 10 102790074 102790074 C T PDZD7 5'UTR 0.27 TCGA-2Y-A9GU-01 10 108339221 108339221 C T SORCS1 Missense_Mutation p.D1093N 0.26 deleterious(0.02) probably_damaging(0.982) TCGA-2Y-A9GU-01 10 123844285 123844285 C T TACC2 Missense_Mutation p.T757M 0.06 possibly_damaging(0.54) TCGA-2Y-A9GU-01 10 135094884 135094884 G A TUBGCP2 Silent p.I850I 0.16 TCGA-2Y-A9GU-01 10 14050072 14050072 C T FRMD4A Intron 0.13 TCGA-2Y-A9GU-01 10 24889744 24889744 G C ARHGAP21 Missense_Mutation p.P988R 0.42 deleterious(0.04) probably_damaging(0.988) TCGA-2Y-A9GU-01 10 30316257 30316257 A G KIAA1462 Silent p.G940G 0.23 TCGA-2Y-A9GU-01 10 75673074 75673074 G T PLAU Missense_Mutation p.W132L 0.07 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9GU-01 10 7749193 7749193 G T ITIH2 Missense_Mutation p.M63I 0.31 tolerated(0.21) benign(0) TCGA-2Y-A9GU-01 11 102713311 102713311 C A MMP3 Splice_Site p.X117_splice 0.28 TCGA-2Y-A9GU-01 11 113295414 113295414 A G DRD2 Intron 0.22 TCGA-2Y-A9GU-01 11 124857994 124857998 CAAAT - CCDC15 Frame_Shift_Del p.K625Sfs*15 0.43 TCGA-2Y-A9GU-01 11 19170829 19170829 T C ZDHHC13 Missense_Mutation p.V157A 0.30 tolerated(0.45) benign(0.326) TCGA-2Y-A9GU-01 11 30034308 30034308 A G KCNA4 5'UTR 0.18 TCGA-2Y-A9GU-01 11 5020444 5020444 T C OR51L1 Missense_Mutation p.S78P 0.45 tolerated(0.1) probably_damaging(0.997) TCGA-2Y-A9GU-01 11 62760762 62760762 C T SLC22A8 Missense_Mutation p.A526T 0.24 tolerated(0.46) benign(0.011) TCGA-2Y-A9GU-01 11 70201848 70201848 A T PPFIA1 Missense_Mutation p.I807F 0.15 deleterious(0.01) probably_damaging(0.966) TCGA-2Y-A9GU-01 11 87032351 87032351 A T TMEM135 Silent p.P451P 0.18 TCGA-2Y-A9GU-01 12 105198895 105198895 T A SLC41A2 3'UTR 0.24 TCGA-2Y-A9GU-01 12 122400054 122400054 T C WDR66 Silent p.T826T 0.07 TCGA-2Y-A9GU-01 12 129569468 129569468 T C TMEM132D Intron 0.62 TCGA-2Y-A9GU-01 12 130185157 130185157 C T TMEM132D Missense_Mutation p.A56T 0.21 tolerated(0.09) benign(0.08) TCGA-2Y-A9GU-01 12 53040621 53040621 G A KRT2 Missense_Mutation p.R458W 0.24 deleterious(0) probably_damaging(0.991) TCGA-2Y-A9GU-01 12 53819694 53819694 G A AMHR2 Silent p.L281L 0.09 TCGA-2Y-A9GU-01 12 57114040 57114040 T C NACA Missense_Mutation p.Y425C 0.22 deleterious_low_confidence(0) benign(0.005) TCGA-2Y-A9GU-01 12 57563071 57563071 C T LRP1 Silent p.H1048H 0.30 TCGA-2Y-A9GU-01 12 66742634 66742634 G C GRIP1 3'UTR 0.15 TCGA-2Y-A9GU-01 12 66838478 66838478 T A GRIP1 Missense_Mutation p.M473L 0.09 tolerated(1) benign(0) TCGA-2Y-A9GU-01 12 674565 674565 G A NINJ2 Missense_Mutation p.R135W 0.35 deleterious(0) probably_damaging(0.927) TCGA-2Y-A9GU-01 12 7087833 7087833 G A LPCAT3 Missense_Mutation p.R269C 0.23 deleterious(0) probably_damaging(0.996) TCGA-2Y-A9GU-01 12 85450034 85450035 - A LRRIQ1 Frame_Shift_Ins p.R491Tfs*14 0.40 TCGA-2Y-A9GU-01 13 29600032 29600032 C T MTUS2 Silent p.G409G 0.47 TCGA-2Y-A9GU-01 13 31480594 31480594 C T MEDAG 5'UTR 0.26 TCGA-2Y-A9GU-01 13 53422137 53422137 G A PCDH8 Silent p.S145S 0.16 TCGA-2Y-A9GU-01 14 102029705 102029705 C T DIO3 3'UTR 0.29 TCGA-2Y-A9GU-01 14 23567885 23567885 A G C14orf119 3'UTR 0.25 TCGA-2Y-A9GU-01 14 33046347 33046347 G T AKAP6 Nonsense_Mutation p.E790* 0.18 TCGA-2Y-A9GU-01 14 78288800 78288800 A G ADCK1 Missense_Mutation p.Y53C 0.24 deleterious(0) probably_damaging(1) TCGA-2Y-A9GU-01 15 23812771 23812771 A G MKRN3 3'UTR 0.05 TCGA-2Y-A9GU-01 15 31360290 31360290 G A TRPM1 Silent p.I112I 0.23 TCGA-2Y-A9GU-01 15 32451829 32451829 G A CHRNA7 Missense_Mutation p.A314T 0.18 tolerated(0.07) possibly_damaging(0.72) TCGA-2Y-A9GU-01 15 45443417 45443417 C T DUOX1 Silent p.P995P 0.51 TCGA-2Y-A9GU-01 15 55727133 55727134 - T DYX1C1 Frame_Shift_Ins p.N339Kfs*7 0.18 TCGA-2Y-A9GU-01 15 56683537 56683537 T A TEX9 Silent p.I164I 0.19 TCGA-2Y-A9GU-01 15 67073814 67073814 C T SMAD6 Missense_Mutation p.R478W 0.16 deleterious(0) probably_damaging(1) TCGA-2Y-A9GU-01 15 70959216 70959216 T C UACA Missense_Mutation p.I1269M 0.20 tolerated(0.12) benign(0.025) TCGA-2Y-A9GU-01 15 75500060 75500060 C T C15orf39 Silent p.G557G 0.44 TCGA-2Y-A9GU-01 15 82512452 82512452 T G EFTUD1 Missense_Mutation p.I471L 0.43 tolerated(0.68) benign(0) TCGA-2Y-A9GU-01 16 17228400 17228400 G T XYLT1 Missense_Mutation p.H653N 0.41 tolerated(0.14) possibly_damaging(0.88) TCGA-2Y-A9GU-01 16 28511197 28511197 T C IL27 Silent p.E169E 0.06 TCGA-2Y-A9GU-01 16 30772547 30772547 G A C16orf93 Missense_Mutation p.P70S 0.21 deleterious(0.04) probably_damaging(0.977) TCGA-2Y-A9GU-01 16 31226233 31226233 C T TRIM72 Silent p.A58A 0.21 TCGA-2Y-A9GU-01 16 3658812 3658812 T C SLX4 Missense_Mutation p.K52E 0.20 deleterious(0.01) possibly_damaging(0.505) TCGA-2Y-A9GU-01 16 48258272 48258272 A G ABCC11 Missense_Mutation p.M155T 0.11 tolerated(0.09) benign(0.368) TCGA-2Y-A9GU-01 16 66655924 66655924 G A CMTM4 Intron 0.28 TCGA-2Y-A9GU-01 16 71512898 71512898 G C ZNF19 Missense_Mutation p.T15S 0.38 deleterious(0) possibly_damaging(0.61) TCGA-2Y-A9GU-01 16 71894259 71894259 G A ZNF821 Missense_Mutation p.R301C 0.09 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9GU-01 17 44128014 44128015 - A KANSL1 Frame_Shift_Ins p.C636Vfs*16 0.25 TCGA-2Y-A9GU-01 17 56499622 56499622 C G HSF5 3'UTR 0.11 TCGA-2Y-A9GU-01 17 68130192 68130192 C T KCNJ16 3'UTR 0.36 TCGA-2Y-A9GU-01 17 71232524 71232524 C T C17orf80 Silent p.T301T 0.41 TCGA-2Y-A9GU-01 18 13746225 13746225 A G RNMT Silent p.A382A 0.16 TCGA-2Y-A9GU-01 18 29787402 29787403 TC - MEP1B Frame_Shift_Del p.L246Pfs*8 0.13 TCGA-2Y-A9GU-01 19 16275694 16275694 C A CIB3 Missense_Mutation p.W126L 0.36 tolerated(0.21) benign(0.005) TCGA-2Y-A9GU-01 19 17320402 17320402 G A MYO9B Missense_Mutation p.E1878K 0.42 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9GU-01 19 2039656 2039656 T C MKNK2 Missense_Mutation p.S452G 0.13 deleterious_low_confidence(0.04) possibly_damaging(0.556) TCGA-2Y-A9GU-01 19 21350459 21350459 T C ZNF431 Silent p.D103D 0.45 TCGA-2Y-A9GU-01 19 21990788 21990788 C A ZNF43 Missense_Mutation p.G684V 0.14 deleterious(0) probably_damaging(0.997) TCGA-2Y-A9GU-01 19 36042401 36042401 C T ATP4A Missense_Mutation p.V945I 0.29 deleterious(0.02) benign(0.385) TCGA-2Y-A9GU-01 19 42801514 42801514 G A PAFAH1B3 Silent p.L138L 0.25 TCGA-2Y-A9GU-01 19 43420365 43420365 C T PSG6 Silent p.Q113Q 0.24 TCGA-2Y-A9GU-01 19 44934502 44934502 G T ZNF229 Missense_Mutation p.P152T 0.12 deleterious(0.05) benign(0.038) TCGA-2Y-A9GU-01 19 45912584 45912584 C G CD3EAP Missense_Mutation p.A453G 0.28 deleterious(0) possibly_damaging(0.494) TCGA-2Y-A9GU-01 19 46124887 46124887 G A EML2 Missense_Mutation p.R485C 0.17 deleterious(0.02) possibly_damaging(0.888) TCGA-2Y-A9GU-01 19 47588594 47588594 G T ZC3H4 Silent p.S316S 0.06 TCGA-2Y-A9GU-01 19 48533839 48533839 T A CABP5 Missense_Mutation p.E166V 0.14 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9GU-01 19 55045099 55045099 T C KIR3DX1 Silent p.T73T 0.44 TCGA-2Y-A9GU-01 19 55777301 55777301 C A HSPBP1 Silent p.R282R 0.15 TCGA-2Y-A9GU-01 19 6924851 6924851 T C EMR1 Missense_Mutation p.F652L 0.13 deleterious(0) probably_damaging(1) TCGA-2Y-A9GU-01 19 8807887 8807887 A T ACTL9 Missense_Mutation p.S389T 0.12 deleterious(0) probably_damaging(0.995) TCGA-2Y-A9GU-01 1 113000078 113000078 G A CTTNBP2NL 3'UTR 0.63 TCGA-2Y-A9GU-01 1 114524060 114524060 G T OLFML3 Missense_Mutation p.C297F 0.06 tolerated(0.52) possibly_damaging(0.462) TCGA-2Y-A9GU-01 1 1328031 1328031 G T CCNL2 Intron 0.48 TCGA-2Y-A9GU-01 1 152324872 152324872 C T FLG2 Missense_Mutation p.G1797E 0.08 probably_damaging(1) TCGA-2Y-A9GU-01 1 152324873 152324873 C A FLG2 Nonsense_Mutation p.G1797* 0.08 TCGA-2Y-A9GU-01 1 15441094 15441094 T A KAZN Missense_Mutation p.L764Q 0.24 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-2Y-A9GU-01 1 155887335 155887335 T C KIAA0907 Silent p.T465T 0.12 TCGA-2Y-A9GU-01 1 162344031 162344031 A T C1orf111 Missense_Mutation p.L198H 0.08 deleterious(0) probably_damaging(1) TCGA-2Y-A9GU-01 1 167096100 167096100 G A DUSP27 Missense_Mutation p.E578K 0.14 tolerated(0.26) benign(0.063) TCGA-2Y-A9GU-01 1 168032858 168032858 G C DCAF6 Splice_Site p.X767_splice 0.12 TCGA-2Y-A9GU-01 1 174957817 174957817 A G RABGAP1L Missense_Mutation p.S256G 0.14 tolerated(0.05) benign(0.133) TCGA-2Y-A9GU-01 1 175067608 175067608 G T TNN Missense_Mutation p.V666L 0.24 tolerated(0.15) possibly_damaging(0.835) TCGA-2Y-A9GU-01 1 178408576 178408576 C G RASAL2 Missense_Mutation p.L232V 0.22 tolerated(0.06) probably_damaging(0.995) TCGA-2Y-A9GU-01 1 179561920 179561920 T C TDRD5 Missense_Mutation p.V57A 0.11 deleterious(0) possibly_damaging(0.615) TCGA-2Y-A9GU-01 1 182850422 182850422 T C DHX9 Missense_Mutation p.I883T 0.10 deleterious(0.01) probably_damaging(0.96) TCGA-2Y-A9GU-01 1 186052065 186052066 - A HMCN1 Frame_Shift_Ins p.Y2955Ifs*3 0.10 TCGA-2Y-A9GU-01 1 208272269 208272269 T G PLXNA2 Silent p.R551R 0.11 TCGA-2Y-A9GU-01 1 211462588 211462588 A G RCOR3 Silent p.Q263Q 0.20 TCGA-2Y-A9GU-01 1 211652629 211652629 C T RD3 Missense_Mutation p.E113K 0.21 deleterious(0) probably_damaging(0.913) TCGA-2Y-A9GU-01 1 213124966 213124966 C T VASH2 Missense_Mutation p.R28W 0.09 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-2Y-A9GU-01 1 225190629 225190629 G A DNAH14 Silent p.K325K 0.12 TCGA-2Y-A9GU-01 1 237919659 237919659 G T RYR2 Missense_Mutation p.M3739I 0.08 possibly_damaging(0.493) TCGA-2Y-A9GU-01 1 248059059 248059059 C A OR2W3 Silent p.T57T 0.28 TCGA-2Y-A9GU-01 1 2938855 2938855 A C ACTRT2 Missense_Mutation p.H202P 0.14 tolerated(0.09) benign(0.009) TCGA-2Y-A9GU-01 1 3669193 3669193 G A CCDC27 Missense_Mutation p.A50T 0.18 tolerated(0.37) benign(0.002) TCGA-2Y-A9GU-01 1 43273173 43273173 T G CCDC23 Splice_Site p.X39_splice 0.25 TCGA-2Y-A9GU-01 1 4772364 4772364 C A AJAP1 Missense_Mutation p.A145D 0.44 tolerated(0.08) possibly_damaging(0.661) TCGA-2Y-A9GU-01 1 49224725 49224725 G A BEND5 Missense_Mutation p.R198C 0.31 deleterious(0) possibly_damaging(0.719) TCGA-2Y-A9GU-01 1 53571448 53571448 T C SLC1A7 Splice_Site p.X144_splice 0.19 TCGA-2Y-A9GU-01 1 67148034 67148034 G A SGIP1 Missense_Mutation p.G433S 0.22 tolerated(0.32) probably_damaging(0.986) TCGA-2Y-A9GU-01 1 70541910 70541910 C T LRRC7 Missense_Mutation p.R1423W 0.39 deleterious(0.01) probably_damaging(0.92) TCGA-2Y-A9GU-01 1 86591328 86591328 A G COL24A1 Missense_Mutation p.S231P 0.28 deleterious(0.02) benign(0.027) TCGA-2Y-A9GU-01 20 24944625 24944625 G A APMAP Missense_Mutation p.P359S 0.40 tolerated(0.11) benign(0.129) TCGA-2Y-A9GU-01 20 25028776 25028776 C T ACSS1 Missense_Mutation p.V126I 0.47 tolerated(0.22) benign(0.055) TCGA-2Y-A9GU-01 20 37576553 37576553 A G FAM83D Missense_Mutation p.Y259C 0.21 deleterious(0) probably_damaging(0.996) TCGA-2Y-A9GU-01 20 40979351 40979351 G A PTPRT Silent p.Y594Y 0.17 TCGA-2Y-A9GU-01 20 44815546 44815546 T A CDH22 Silent p.R488R 0.19 TCGA-2Y-A9GU-01 20 629465 629465 C T SRXN1 Missense_Mutation p.A103T 0.37 tolerated(0.26) possibly_damaging(0.508) TCGA-2Y-A9GU-01 21 34889352 34889352 C A GART Missense_Mutation p.G684V 0.16 deleterious(0) probably_damaging(0.923) TCGA-2Y-A9GU-01 21 37612121 37612121 G C DOPEY2 Missense_Mutation p.A979P 0.19 deleterious(0.01) probably_damaging(0.973) TCGA-2Y-A9GU-01 22 37769363 37769363 T A ELFN2 Nonsense_Mutation p.K738* 0.10 TCGA-2Y-A9GU-01 2 114195388 114195388 C T CBWD2 5'UTR 0.50 TCGA-2Y-A9GU-01 2 120438742 120438742 G A TMEM177 Missense_Mutation p.G105S 0.37 deleterious(0) probably_damaging(1) TCGA-2Y-A9GU-01 2 179615916 179615916 A C TTN Intron 0.18 TCGA-2Y-A9GU-01 2 198641827 198641827 C T BOLL Missense_Mutation p.V90I 0.23 tolerated(0.51) benign(0.009) TCGA-2Y-A9GU-01 2 202074072 202074072 G - CASP10 Frame_Shift_Del p.C401Sfs*17 0.16 TCGA-2Y-A9GU-01 2 223339386 223339386 C T SGPP2 Missense_Mutation p.P107S 0.27 deleterious(0) probably_damaging(1) TCGA-2Y-A9GU-01 2 29551301 29551301 A G ALK Silent p.C443C 0.09 TCGA-2Y-A9GU-01 2 43953414 43953414 C T PLEKHH2 Missense_Mutation p.P849S 0.20 deleterious(0.01) benign(0.103) TCGA-2Y-A9GU-01 2 62115703 62115703 G A CCT4 5'UTR 0.45 TCGA-2Y-A9GU-01 2 74752293 74752293 C T DQX1 Missense_Mutation p.G92R 0.05 tolerated(0.82) benign(0.015) TCGA-2Y-A9GU-01 2 90121881 90121881 G A IGKV1D-17 Missense_Mutation p.M33I 0.05 deleterious(0.02) benign(0) TCGA-2Y-A9GU-01 2 96260826 96260826 T A TRIM43 Nonsense_Mutation p.L147* 0.07 TCGA-2Y-A9GU-01 3 111368716 111368716 T C CD96 3'UTR 0.19 TCGA-2Y-A9GU-01 3 119217580 119217580 C A TIMMDC1 5'UTR 0.29 TCGA-2Y-A9GU-01 3 14545145 14545145 A G GRIP2 RNA 0.18 TCGA-2Y-A9GU-01 3 183643410 183643410 A G ABCC5 Missense_Mutation p.L1382P 0.19 deleterious(0) probably_damaging(0.967) TCGA-2Y-A9GU-01 3 195063318 195063318 G A ACAP2 Missense_Mutation p.A137V 0.38 deleterious(0.04) possibly_damaging(0.709) TCGA-2Y-A9GU-01 3 33134222 33134222 G C TMPPE 3'UTR 0.19 TCGA-2Y-A9GU-01 3 35778748 35778748 T C ARPP21 Missense_Mutation p.M479T 0.06 tolerated(0.16) benign(0.004) TCGA-2Y-A9GU-01 3 37476620 37476620 A G C3orf35 Nonstop_Mutation p.*171Wext*36 0.13 TCGA-2Y-A9GU-01 3 38178099 38178099 C T ACAA1 Silent p.L83L 0.23 TCGA-2Y-A9GU-01 3 44893334 44893334 A T KIF15 Missense_Mutation p.T1288S 0.04 tolerated(0.21) benign(0.001) TCGA-2Y-A9GU-01 3 52440899 52440899 C A BAP1 Missense_Mutation p.W202L 0.63 deleterious(0) probably_damaging(1) TCGA-2Y-A9GU-01 3 57994371 57994371 A G FLNB Missense_Mutation p.N27S 0.22 deleterious(0) probably_damaging(0.991) TCGA-2Y-A9GU-01 3 77623726 77623726 C T ROBO2 Missense_Mutation p.S699L 0.21 tolerated(0.1) benign(0) TCGA-2Y-A9GU-01 3 77629133 77629133 C G ROBO2 Missense_Mutation p.I804M 0.22 deleterious(0.03) possibly_damaging(0.639) TCGA-2Y-A9GU-01 3 78763622 78763622 C A ROBO1 Missense_Mutation p.D324Y 0.44 deleterious(0) probably_damaging(1) TCGA-2Y-A9GU-01 4 114276315 114276315 G C ANK2 Missense_Mutation p.D2181H 0.11 probably_damaging(0.989) TCGA-2Y-A9GU-01 4 123122219 123122219 G T KIAA1109 Missense_Mutation p.C479F 0.22 probably_damaging(0.997) TCGA-2Y-A9GU-01 4 123165177 123165177 A T KIAA1109 Missense_Mutation p.L1637F 0.38 probably_damaging(0.999) TCGA-2Y-A9GU-01 4 138451498 138451498 C T PCDH18 Missense_Mutation p.R582H 0.34 tolerated(0.58) benign(0.002) TCGA-2Y-A9GU-01 4 155219388 155219388 T C DCHS2 Silent p.V1571V 0.39 TCGA-2Y-A9GU-01 4 42119373 42119373 C T BEND4 3'UTR 0.68 TCGA-2Y-A9GU-01 4 81256985 81256985 A C C4orf22 Missense_Mutation p.E21D 0.26 deleterious(0.04) possibly_damaging(0.683) TCGA-2Y-A9GU-01 5 133873703 133873703 C A JADE2 Nonsense_Mutation p.S28* 0.08 TCGA-2Y-A9GU-01 5 135651385 135651385 T C TRPC7 Missense_Mutation p.E288G 0.31 tolerated(0.26) benign(0.013) TCGA-2Y-A9GU-01 5 140787868 140787868 C A PCDHGB6 Silent p.I33I 0.08 TCGA-2Y-A9GU-01 5 147258363 147258363 T G SCGB3A2 5'UTR 0.15 TCGA-2Y-A9GU-01 5 158140067 158140067 G C EBF1 Missense_Mutation p.T427S 0.24 tolerated_low_confidence(0.96) benign(0.001) TCGA-2Y-A9GU-01 5 159437674 159437674 A T TTC1 Missense_Mutation p.R47W 0.17 deleterious_low_confidence(0) benign(0.379) TCGA-2Y-A9GU-01 5 40853355 40853355 G C CARD6 Missense_Mutation p.V641L 0.14 tolerated(0.11) benign(0.012) TCGA-2Y-A9GU-01 5 55147432 55147432 G C IL31RA Missense_Mutation p.A12P 0.44 deleterious_low_confidence(0.04) probably_damaging(0.958) TCGA-2Y-A9GU-01 5 60200668 60200668 A C ERCC8 Silent p.V144V 0.04 TCGA-2Y-A9GU-01 5 72857113 72857113 G C ANKRA2 Missense_Mutation p.A97G 0.40 tolerated(0.12) benign(0.142) TCGA-2Y-A9GU-01 6 107111016 107111016 G A QRSL1 Missense_Mutation p.R441Q 0.16 tolerated(0.58) possibly_damaging(0.771) TCGA-2Y-A9GU-01 6 112382473 112382473 G A WISP3 Missense_Mutation p.E128K 0.18 tolerated(0.2) possibly_damaging(0.807) TCGA-2Y-A9GU-01 6 134498800 134498800 C G SGK1 Intron 0.36 TCGA-2Y-A9GU-01 6 154481159 154481159 A G IPCEF1 Missense_Mutation p.L374P 0.21 deleterious(0) probably_damaging(1) TCGA-2Y-A9GU-01 6 158923744 158923744 G A TULP4 Missense_Mutation p.G1017S 0.25 tolerated_low_confidence(0.8) benign(0.005) TCGA-2Y-A9GU-01 6 159653615 159653615 G A FNDC1 Missense_Mutation p.A691T 0.20 tolerated_low_confidence(1) unknown(0) TCGA-2Y-A9GU-01 6 161016462 161016462 G A LPA Silent p.C1131C 0.42 TCGA-2Y-A9GU-01 6 31324656 31324656 T C HLA-B Missense_Mutation p.Y51C 0.24 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-2Y-A9GU-01 6 34622535 34622535 G A C6orf106 Silent p.G60G 0.31 TCGA-2Y-A9GU-01 6 49667518 49667518 G C CRISP2 Silent p.T90T 0.20 TCGA-2Y-A9GU-01 6 71570150 71570150 A G SMAP1 3'UTR 0.14 TCGA-2Y-A9GU-01 6 82906144 82906144 C G IBTK Missense_Mutation p.K1015N 0.15 deleterious(0) benign(0.111) TCGA-2Y-A9GU-01 7 104844117 104844117 A T SRPK2 Missense_Mutation p.S63T 0.30 deleterious(0.01) probably_damaging(0.992) TCGA-2Y-A9GU-01 7 107355965 107355965 G T SLC26A4 3'UTR 0.53 TCGA-2Y-A9GU-01 7 136700923 136700923 T A CHRM2 Silent p.P437P 0.53 TCGA-2Y-A9GU-01 7 141673139 141673139 G C TAS2R38 Nonsense_Mutation p.Y117* 0.23 TCGA-2Y-A9GU-01 7 150778559 150778559 C T TMUB1 3'UTR 0.15 TCGA-2Y-A9GU-01 7 155596202 155596202 G A SHH Missense_Mutation p.R261C 0.26 tolerated(0.18) probably_damaging(0.96) TCGA-2Y-A9GU-01 7 23347541 23347541 A G MALSU1 Missense_Mutation p.T164A 0.14 tolerated(0.25) benign(0.107) TCGA-2Y-A9GU-01 7 34979865 34979865 T G DPY19L1 Missense_Mutation p.Q515H 0.20 tolerated(0.06) probably_damaging(0.934) TCGA-2Y-A9GU-01 7 73038554 73038554 A G MLXIPL Missense_Mutation p.F90S 0.58 deleterious(0) probably_damaging(0.995) TCGA-2Y-A9GU-01 7 73525982 73525982 G C LIMK1 Missense_Mutation p.S430T 0.10 tolerated(0.36) benign(0.003) TCGA-2Y-A9GU-01 7 89854818 89854818 T C STEAP2 Missense_Mutation p.L141S 0.09 tolerated(0.67) benign(0.004) TCGA-2Y-A9GU-01 8 11995102 11995102 C T USP17L2 Missense_Mutation p.E390K 0.31 tolerated(0.59) benign(0.038) TCGA-2Y-A9GU-01 8 120744294 120744294 T C TAF2 Missense_Mutation p.K1157R 0.07 tolerated_low_confidence(0.11) probably_damaging(0.931) TCGA-2Y-A9GU-01 8 133584450 133584450 A C LRRC6 3'UTR 0.22 TCGA-2Y-A9GU-01 8 145740426 145740426 C G RECQL4 Missense_Mutation p.G505A 0.06 deleterious(0.01) probably_damaging(0.986) TCGA-2Y-A9GU-01 8 17611234 17611234 G A MTUS1 Silent p.L695L 0.21 TCGA-2Y-A9GU-01 8 17796420 17796420 A G PCM1 Missense_Mutation p.K172E 0.47 deleterious(0.04) probably_damaging(0.962) TCGA-2Y-A9GU-01 8 72983993 72983993 C T TRPA1 Missense_Mutation p.G74D 0.05 deleterious(0.03) benign(0.055) TCGA-2Y-A9GU-01 8 92007853 92007853 T A TMEM55A 3'UTR 0.10 TCGA-2Y-A9GU-01 9 103340609 103340609 G A MURC Missense_Mutation p.E62K 0.33 deleterious(0) possibly_damaging(0.762) TCGA-2Y-A9GU-01 9 77249681 77249681 A T RORB Silent p.S76S 0.08 TCGA-2Y-A9GU-01 9 96213579 96213579 T C FAM120AOS Intron 0.50 TCGA-2Y-A9GU-01 X 119672026 119672026 A G CUL4B Missense_Mutation p.F649L 0.26 deleterious(0.02) possibly_damaging(0.707) TCGA-2Y-A9GU-01 X 120181749 120181749 G A GLUD2 Missense_Mutation p.E71K 0.11 tolerated(0.08) benign(0.056) TCGA-2Y-A9GU-01 X 12736467 12736467 C T FRMPD4 Silent p.C1174C 0.26 TCGA-2Y-A9GU-01 X 130222641 130222641 G A ARHGAP36 Missense_Mutation p.R509H 0.35 tolerated(0.47) benign(0.001) TCGA-2Y-A9GU-01 X 130678588 130678588 C G OR13H1 Missense_Mutation p.L181V 0.17 tolerated(0.09) benign(0.254) TCGA-2Y-A9GU-01 X 134125311 134125311 G C SMIM10 Missense_Mutation p.K62N 0.18 deleterious(0.02) benign(0.005) TCGA-2Y-A9GU-01 X 135632968 135632968 C T VGLL1 Missense_Mutation p.L226F 0.13 deleterious(0.01) possibly_damaging(0.688) TCGA-2Y-A9GU-01 X 155009368 155009368 C T SPRY3 3'UTR 0.53 TCGA-2Y-A9GU-01 X 54957372 54957372 C T TRO Silent p.G1405G 0.11 TCGA-2Y-A9GU-01 X 55514722 55514722 A G USP51 Silent p.R217R 0.36 TCGA-2Y-A9GU-01 X 70517737 70517737 A C NONO Missense_Mutation p.E360D 0.38 tolerated(0.1) probably_damaging(0.952) TCGA-2Y-A9GU-01 X 70517753 70517753 C T NONO Nonsense_Mutation p.Q366* 0.39 TCGA-2Y-A9GU-01 X 77528345 77528345 C A CYSLTR1 Missense_Mutation p.G300V 0.38 deleterious(0.02) possibly_damaging(0.737) TCGA-2Y-A9GU-01 X 78427214 78427214 G A GPR174 Missense_Mutation p.G237E 0.40 deleterious(0.01) benign(0.295) TCGA-2Y-A9GV-01 10 103906507 103906507 C G PPRC1 Missense_Mutation p.S1253C 0.28 deleterious(0) probably_damaging(0.994) TCGA-2Y-A9GV-01 11 120690494 120690494 T C GRIK4 Missense_Mutation p.F126L 0.26 tolerated(0.65) benign(0.002) TCGA-2Y-A9GV-01 11 6624754 6624754 G T RRP8 5'UTR 0.07 TCGA-2Y-A9GV-01 11 74013578 74013578 C G P4HA3 Missense_Mutation p.G135R 0.31 deleterious(0) probably_damaging(1) TCGA-2Y-A9GV-01 11 9494252 9494252 C T ZNF143 Silent p.G47G 0.23 TCGA-2Y-A9GV-01 12 102190473 102190473 C A GNPTAB Missense_Mutation p.G62V 0.31 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9GV-01 12 53225368 53225368 A G KRT79 Missense_Mutation p.W174R 0.36 deleterious(0) probably_damaging(1) TCGA-2Y-A9GV-01 13 108886380 108886380 C A ABHD13 3'UTR 0.27 TCGA-2Y-A9GV-01 13 111287890 111287890 G T CARKD Missense_Mutation p.V243L 0.26 tolerated(0.08) benign(0.124) TCGA-2Y-A9GV-01 14 104642745 104642745 A T KIF26A Missense_Mutation p.H1207L 0.27 deleterious(0.02) probably_damaging(0.991) TCGA-2Y-A9GV-01 14 24044991 24044991 G A JPH4 Missense_Mutation p.R352W 0.28 deleterious(0) probably_damaging(0.924) TCGA-2Y-A9GV-01 14 72976961 72976961 G T RGS6 Missense_Mutation p.E355D 0.30 tolerated(0.24) benign(0.226) TCGA-2Y-A9GV-01 15 40313165 40313165 C G EIF2AK4 Missense_Mutation p.I1413M 0.36 deleterious(0.01) possibly_damaging(0.81) TCGA-2Y-A9GV-01 15 43045067 43045067 A C TTBK2 Missense_Mutation p.L793V 0.36 tolerated_low_confidence(0.12) benign(0.37) TCGA-2Y-A9GV-01 16 15609232 15609232 A C C16orf45 Missense_Mutation p.K59N 0.06 deleterious(0) probably_damaging(0.996) TCGA-2Y-A9GV-01 16 48139142 48139159 ACACCATGCTTGCAGTGT - ABCC12 In_Frame_Del p.Y855_V860del 0.25 TCGA-2Y-A9GV-01 16 66971949 66971949 C G CES2 Nonsense_Mutation p.S93* 0.34 TCGA-2Y-A9GV-01 16 88503444 88503444 T A ZNF469 Missense_Mutation p.M3161K 0.25 probably_damaging(0.99) TCGA-2Y-A9GV-01 17 29203505 29203505 T A ATAD5 Missense_Mutation p.F1241I 0.31 deleterious(0) probably_damaging(1) TCGA-2Y-A9GV-01 17 40574761 40574761 C T PTRF Missense_Mutation p.V119I 0.28 tolerated(0.1) possibly_damaging(0.899) TCGA-2Y-A9GV-01 17 45369918 45369918 G T ITGB3 Missense_Mutation p.K558N 0.31 tolerated(0.1) possibly_damaging(0.534) TCGA-2Y-A9GV-01 17 60814029 60814029 A T MARCH10 Silent p.P400P 0.35 TCGA-2Y-A9GV-01 18 46798586 46798586 T C DYM Missense_Mutation p.T405A 0.24 deleterious(0.01) possibly_damaging(0.654) TCGA-2Y-A9GV-01 19 14231253 14231253 C T ASF1B 3'UTR 0.23 TCGA-2Y-A9GV-01 19 36363437 36363437 T A APLP1 Silent p.P301P 0.30 TCGA-2Y-A9GV-01 19 37870128 37870128 A G ZNF527 Missense_Mutation p.Y47C 0.13 deleterious(0) possibly_damaging(0.797) TCGA-2Y-A9GV-01 19 40581433 40581433 C T ZNF780A Missense_Mutation p.V307I 0.36 deleterious(0.03) benign(0.05) TCGA-2Y-A9GV-01 19 44635631 44635631 C T ZNF225 Silent p.F288F 0.28 TCGA-2Y-A9GV-01 19 51293729 51293729 C G ACPT Missense_Mutation p.L20V 0.06 tolerated(0.27) benign(0.001) TCGA-2Y-A9GV-01 19 55264025 55264060 CTAGGGAGACAACAGCCCTGTCTCAAAACTGGGTTG - KIR2DL3 3'UTR 0.23 TCGA-2Y-A9GV-01 19 6937618 6937618 T A EMR1 Missense_Mutation p.S872T 0.31 tolerated(0.11) possibly_damaging(0.666) TCGA-2Y-A9GV-01 1 104297408 104297408 G A AMY1C Missense_Mutation p.R358H 0.15 tolerated(0.52) benign(0.001) TCGA-2Y-A9GV-01 1 116935513 116935514 - A ATP1A1 Frame_Shift_Ins p.C459Vfs*36 0.24 TCGA-2Y-A9GV-01 1 155896529 155896529 G C KIAA0907 Missense_Mutation p.Q207E 0.25 deleterious(0.05) possibly_damaging(0.848) TCGA-2Y-A9GV-01 1 158390511 158390511 A G OR10K2 Missense_Mutation p.I49T 0.31 tolerated(0.24) possibly_damaging(0.721) TCGA-2Y-A9GV-01 1 178491567 178491567 G A TEX35 Missense_Mutation p.G232R 0.31 tolerated_low_confidence(0.09) probably_damaging(0.979) TCGA-2Y-A9GV-01 1 19545775 19545775 T C EMC1 3'UTR 0.41 TCGA-2Y-A9GV-01 1 206822203 206822203 A G DYRK3 Missense_Mutation p.K554E 0.28 deleterious(0.03) benign(0.129) TCGA-2Y-A9GV-01 1 248343868 248343868 T C OR2M2 Missense_Mutation p.I194T 0.05 tolerated(0.41) benign(0.004) TCGA-2Y-A9GV-01 1 31346006 31346006 G C SDC3 3'UTR 0.29 TCGA-2Y-A9GV-01 1 32256885 32256885 C G SPOCD1 Missense_Mutation p.W990C 0.23 tolerated(0.18) benign(0.288) TCGA-2Y-A9GV-01 1 3390035 3390035 C T ARHGEF16 Silent p.S418S 0.15 TCGA-2Y-A9GV-01 1 54059778 54059778 C G GLIS1 Intron 0.15 TCGA-2Y-A9GV-01 20 47317318 47317318 A C PREX1 Missense_Mutation p.L297R 0.30 deleterious(0) probably_damaging(0.928) TCGA-2Y-A9GV-01 20 4854660 4854660 T A SLC23A2 Nonsense_Mutation p.K342* 0.30 TCGA-2Y-A9GV-01 21 31709506 31709506 A G KRTAP27-1 Missense_Mutation p.C161R 0.39 tolerated(0.18) unknown(0) TCGA-2Y-A9GV-01 21 38126652 38126652 A G HLCS Silent p.S692S 0.08 TCGA-2Y-A9GV-01 22 45931160 45931160 C G FBLN1 Missense_Mutation p.R289G 0.06 deleterious(0.04) probably_damaging(0.913) TCGA-2Y-A9GV-01 2 223559819 223559819 T G MOGAT1 Missense_Mutation p.V222G 0.27 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9GV-01 2 230723842 230723842 C T TRIP12 Missense_Mutation p.A183T 0.30 tolerated_low_confidence(0.14) benign(0.039) TCGA-2Y-A9GV-01 2 232574915 232574915 G A PTMA Intron 0.28 TCGA-2Y-A9GV-01 2 85827014 85827014 C A TMEM150A Missense_Mutation p.Q132H 0.31 deleterious(0) probably_damaging(0.985) TCGA-2Y-A9GV-01 3 194150876 194150876 G A ATP13A3 Missense_Mutation p.S901L 0.04 deleterious(0) possibly_damaging(0.894) TCGA-2Y-A9GV-01 3 38347652 38347652 C T SLC22A14 Silent p.H45H 0.25 TCGA-2Y-A9GV-01 3 49055466 49055466 G C DALRD3 Missense_Mutation p.R151G 0.38 deleterious(0.02) benign(0.018) TCGA-2Y-A9GV-01 3 52392602 52392602 C G DNAH1 Missense_Mutation p.T1372R 0.33 probably_damaging(0.947) TCGA-2Y-A9GV-01 3 58484242 58484242 A G KCTD6 5'UTR 0.25 TCGA-2Y-A9GV-01 4 122791584 122791584 C A BBS7 5'UTR 0.38 TCGA-2Y-A9GV-01 4 176556177 176556177 C A GPM6A Missense_Mutation p.W239L 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-2Y-A9GV-01 4 87610344 87610344 G T PTPN13 Splice_Site p.X182_splice 0.08 TCGA-2Y-A9GV-01 5 134076873 134076873 A T CAMLG Missense_Mutation p.Q98L 0.28 tolerated_low_confidence(0.42) benign(0.001) TCGA-2Y-A9GV-01 5 140731303 140731303 G A PCDHGB1 Silent p.L492L 0.28 TCGA-2Y-A9GV-01 5 168135071 168135071 A G SLIT3 Silent p.N918N 0.28 TCGA-2Y-A9GV-01 5 178634533 178634533 A G ADAMTS2 Missense_Mutation p.L291P 0.40 deleterious(0) probably_damaging(1) TCGA-2Y-A9GV-01 5 1878600 1878600 T A IRX4 Missense_Mutation p.E348V 0.24 deleterious(0.02) possibly_damaging(0.649) TCGA-2Y-A9GV-01 5 53816291 53816291 G T SNX18 3'UTR 0.34 TCGA-2Y-A9GV-01 5 60839733 60839733 C T ZSWIM6 Silent p.S1079S 0.12 TCGA-2Y-A9GV-01 5 90106847 90106847 T C GPR98 Missense_Mutation p.I5257T 0.23 benign(0.002) TCGA-2Y-A9GV-01 5 94988893 94988893 A T RFESD Missense_Mutation p.I45F 0.23 deleterious_low_confidence(0.01) benign(0.076) TCGA-2Y-A9GV-01 5 9629198 9629198 G T TAS2R1 3'UTR 0.27 TCGA-2Y-A9GV-01 6 116600549 116600549 C G TSPYL1 Missense_Mutation p.E149Q 0.33 tolerated(0.06) benign(0.003) TCGA-2Y-A9GV-01 6 146056357 146056357 G A EPM2A Missense_Mutation p.P93L 0.31 tolerated(0.29) benign(0.03) TCGA-2Y-A9GV-01 6 167549735 167549735 T C CCR6 Missense_Mutation p.M6T 0.37 tolerated(0.31) benign(0.001) TCGA-2Y-A9GV-01 6 79727292 79727292 A G PHIP Missense_Mutation p.F335L 0.28 deleterious(0.02) possibly_damaging(0.878) TCGA-2Y-A9GV-01 7 127255352 127255352 A T PAX4 Intron 0.31 TCGA-2Y-A9GV-01 7 149494390 149494390 C A SSPO RNA 0.20 TCGA-2Y-A9GV-01 7 44161504 44161504 T C POLD2 Missense_Mutation p.Y50C 0.27 deleterious(0) probably_damaging(0.997) TCGA-2Y-A9GV-01 8 113812406 113812406 T C CSMD3 Missense_Mutation p.K653E 0.26 tolerated(0.05) probably_damaging(0.996) TCGA-2Y-A9GV-01 8 133645068 133645068 G T LRRC6 Missense_Mutation p.H191N 0.34 tolerated(0.5) benign(0) TCGA-2Y-A9GV-01 8 144917875 144917876 - AGGCGGCCAGCTTCAT NRBP2 Frame_Shift_Ins p.F488Yfs*95 0.09 TCGA-2Y-A9GV-01 8 23069654 23069654 G A TNFRSF10A Silent p.S126S 0.31 TCGA-2Y-A9GV-01 8 23069655 23069655 C A TNFRSF10A Missense_Mutation p.S126I 0.30 deleterious(0) possibly_damaging(0.882) TCGA-2Y-A9GV-01 9 140126558 140126558 G T SLC34A3 Silent p.G40G 0.26 TCGA-2Y-A9GV-01 9 140196211 140196211 T C NRARP Missense_Mutation p.Q57R 0.30 tolerated(0.05) probably_damaging(0.932) TCGA-2Y-A9GV-01 9 140509175 140509175 G A ARRDC1 Silent p.E320E 0.06 TCGA-2Y-A9GV-01 X 107977611 107977611 A T IRS4 Missense_Mutation p.L655H 0.04 deleterious_low_confidence(0.01) unknown(0) TCGA-2Y-A9GV-01 X 129270694 129270694 A T AIFM1 Missense_Mutation p.V363E 0.30 deleterious(0) probably_damaging(0.92) TCGA-2Y-A9GV-01 X 147014109 147014109 G A FMR1 Missense_Mutation p.G266R 0.30 deleterious(0) probably_damaging(1) TCGA-2Y-A9GV-01 X 36317241 36317241 A T CXorf30 Silent p.P58P 0.30 TCGA-2Y-A9GV-01 X 47705521 47705521 C T ZNF81 5'UTR 0.17 TCGA-2Y-A9GW-01 10 17204235 17204235 T C TRDMT1 Missense_Mutation p.I85V 0.20 tolerated(0.33) benign(0.19) TCGA-2Y-A9GW-01 10 71078635 71078635 C A HK1 Intron 0.19 TCGA-2Y-A9GW-01 10 73521753 73521753 G A C10orf54 Missense_Mutation p.P38L 0.15 tolerated(0.08) benign(0.013) TCGA-2Y-A9GW-01 10 94840 94840 T C TUBB8 Missense_Mutation p.I24V 0.35 tolerated_low_confidence(0.09) benign(0.065) TCGA-2Y-A9GW-01 11 1000560 1000560 C T AP2A2 Silent p.V695V 0.29 TCGA-2Y-A9GW-01 11 108199941 108199941 G C ATM Missense_Mutation p.R2428T 0.10 tolerated(0.1) benign(0.217) TCGA-2Y-A9GW-01 11 117162462 117162462 T G BACE1 Missense_Mutation p.E303A 0.11 tolerated(0.29) benign(0.054) TCGA-2Y-A9GW-01 11 2291265 2291265 G C ASCL2 Missense_Mutation p.R100G 0.20 deleterious(0) probably_damaging(0.997) TCGA-2Y-A9GW-01 11 59623531 59623531 C T TCN1 Missense_Mutation p.A250T 0.15 deleterious(0.03) benign(0.351) TCGA-2Y-A9GW-01 11 65350076 65350076 G - EHBP1L1 Frame_Shift_Del p.T646Qfs*25 0.20 TCGA-2Y-A9GW-01 11 73076531 73076531 G T ARHGEF17 Missense_Mutation p.V1883L 0.21 tolerated(0.24) possibly_damaging(0.484) TCGA-2Y-A9GW-01 11 8118839 8118839 T G TUB Missense_Mutation p.L306R 0.10 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9GW-01 12 112371729 112371729 G A TMEM116 Missense_Mutation p.R232C 0.15 tolerated(0.18) benign(0.006) TCGA-2Y-A9GW-01 12 124268707 124268707 G C DNAH10 Missense_Mutation p.V344L 0.29 benign(0.005) TCGA-2Y-A9GW-01 12 85680667 85680667 A G ALX1 Missense_Mutation p.R190G 0.03 deleterious(0) benign(0.425) TCGA-2Y-A9GW-01 13 73346861 73346861 C A DIS3 Silent p.L452L 0.35 TCGA-2Y-A9GW-01 14 102916924 102916924 G A TECPR2 Missense_Mutation p.R1115H 0.08 deleterious(0.01) possibly_damaging(0.836) TCGA-2Y-A9GW-01 14 36005072 36005072 A G INSM2 Silent p.P538P 0.28 TCGA-2Y-A9GW-01 14 62248976 62248976 A G SNAPC1 Silent p.S279S 0.39 TCGA-2Y-A9GW-01 15 28437148 28437148 C A HERC2 Missense_Mutation p.G2804C 0.16 benign(0.073) TCGA-2Y-A9GW-01 15 38773609 38773609 T A FAM98B Silent p.I282I 0.20 TCGA-2Y-A9GW-01 16 15706458 15706458 A G KIAA0430 Missense_Mutation p.S1144P 0.25 deleterious(0) possibly_damaging(0.72) TCGA-2Y-A9GW-01 16 5050723 5050723 G A SEC14L5 Silent p.G346G 0.17 TCGA-2Y-A9GW-01 16 70710812 70710812 A C MTSS1L Missense_Mutation p.S268A 0.22 deleterious(0.05) probably_damaging(0.986) TCGA-2Y-A9GW-01 16 71604656 71604657 - G TAT Frame_Shift_Ins p.K280Qfs*17 0.15 TCGA-2Y-A9GW-01 17 15234544 15234544 A T TEKT3 Missense_Mutation p.L120Q 0.26 deleterious(0) probably_damaging(0.986) TCGA-2Y-A9GW-01 17 1584925 1584925 A C PRPF8 Missense_Mutation p.L238R 0.23 deleterious(0) probably_damaging(0.977) TCGA-2Y-A9GW-01 17 19319264 19319264 C T RNF112 Missense_Mutation p.L558F 0.25 tolerated(0.2) unknown(0) TCGA-2Y-A9GW-01 17 21731257 21731257 G T UBBP4 Intron 0.23 TCGA-2Y-A9GW-01 17 56643154 56643154 C T TEX14 Silent p.T1352T 0.21 TCGA-2Y-A9GW-01 17 655492 655492 G T GEMIN4 5'UTR 0.23 TCGA-2Y-A9GW-01 17 70845832 70845832 C T SLC39A11 Missense_Mutation p.G188D 0.23 tolerated(0.5) benign(0.009) TCGA-2Y-A9GW-01 17 71202364 71202364 T G COG1 Missense_Mutation p.L861R 0.23 deleterious(0) probably_damaging(0.952) TCGA-2Y-A9GW-01 18 48444552 48444552 A G ME2 Missense_Mutation p.I235V 0.08 tolerated(0.38) benign(0.297) TCGA-2Y-A9GW-01 18 50923690 50923690 A G DCC Missense_Mutation p.T901A 0.09 deleterious(0) probably_damaging(0.957) TCGA-2Y-A9GW-01 19 13039211 13039211 G T FARSA Silent p.L262L 0.19 TCGA-2Y-A9GW-01 19 287737 287737 T - PPAP2C Frame_Shift_Del p.A95Pfs*35 0.11 TCGA-2Y-A9GW-01 19 2917323 2917323 G A ZNF57 Missense_Mutation p.G235E 0.22 tolerated(0.27) benign(0.008) TCGA-2Y-A9GW-01 19 42192077 42192077 G T CEACAM7 Silent p.A6A 0.25 TCGA-2Y-A9GW-01 19 42383663 42383663 A G CD79A Silent p.T146T 0.32 TCGA-2Y-A9GW-01 19 50016611 50016611 T G FCGRT Intron 0.25 TCGA-2Y-A9GW-01 19 54844951 54844951 T C LILRA4 Silent p.L464L 0.27 TCGA-2Y-A9GW-01 19 57985762 57985762 T C ZNF772 Missense_Mutation p.E117G 0.21 deleterious(0.03) possibly_damaging(0.804) TCGA-2Y-A9GW-01 19 5827964 5827964 T C NRTN Missense_Mutation p.V125A 0.23 deleterious(0.03) benign(0.008) TCGA-2Y-A9GW-01 1 103387110 103387110 T A COL11A1 Silent p.P1224P 0.09 TCGA-2Y-A9GW-01 1 147231308 147231308 T C GJA5 Silent p.E13E 0.04 TCGA-2Y-A9GW-01 1 181725172 181725172 A G CACNA1E Missense_Mutation p.N1357S 0.45 deleterious(0.01) possibly_damaging(0.893) TCGA-2Y-A9GW-01 1 183774353 183774353 G A RGL1 Intron 0.48 TCGA-2Y-A9GW-01 1 224345064 224345064 G A FBXO28 Silent p.P241P 0.06 TCGA-2Y-A9GW-01 1 228112006 228112006 T C WNT9A Missense_Mutation p.T150A 0.14 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9GW-01 1 248801857 248801857 G T OR2T35 Missense_Mutation p.R235S 0.39 deleterious(0.01) benign(0.143) TCGA-2Y-A9GW-01 1 27269366 27269366 C T NUDC Missense_Mutation p.A184V 0.29 tolerated(0.22) benign(0.002) TCGA-2Y-A9GW-01 1 42880608 42880608 T C RIMKLA Missense_Mutation p.I380T 0.13 deleterious_low_confidence(0.02) benign(0.038) TCGA-2Y-A9GW-01 1 46500510 46500510 G A MAST2 Missense_Mutation p.R1390Q 0.22 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-2Y-A9GW-01 1 67423877 67423877 A G MIER1 Missense_Mutation p.N159D 0.22 tolerated(0.13) benign(0.09) TCGA-2Y-A9GW-01 1 67423897 67423897 A C MIER1 Missense_Mutation p.E165D 0.20 tolerated(0.28) benign(0.09) TCGA-2Y-A9GW-01 21 27840930 27840930 C A CYYR1 Missense_Mutation p.D119Y 0.20 deleterious(0) probably_damaging(0.929) TCGA-2Y-A9GW-01 22 36900813 36900813 G A FOXRED2 Silent p.S176S 0.25 TCGA-2Y-A9GW-01 22 51117297 51117297 G A SHANK3 Silent p.G183G 0.17 TCGA-2Y-A9GW-01 2 141526828 141526828 C A LRP1B Missense_Mutation p.M1904I 0.24 benign(0.019) TCGA-2Y-A9GW-01 2 49210076 49210076 G A FSHR Missense_Mutation p.H215Y 0.21 tolerated(0.22) benign(0.004) TCGA-2Y-A9GW-01 2 5835076 5835076 C G SOX11 3'UTR 0.27 TCGA-2Y-A9GW-01 2 74392236 74392236 C A MOB1A Intron 0.31 TCGA-2Y-A9GW-01 2 88857341 88857341 G A EIF2AK3 Silent p.L1088L 0.22 TCGA-2Y-A9GW-01 3 107097051 107097051 A C CCDC54 Missense_Mutation p.D206A 0.10 tolerated(0.38) benign(0.009) TCGA-2Y-A9GW-01 3 121200637 121200637 G A POLQ Missense_Mutation p.P1998L 0.24 deleterious(0) probably_damaging(0.989) TCGA-2Y-A9GW-01 3 130287034 130287034 G T COL6A6 Missense_Mutation p.V663L 0.23 tolerated(0.08) probably_damaging(0.997) TCGA-2Y-A9GW-01 3 14939057 14939057 C A FGD5 Missense_Mutation p.D930E 0.28 tolerated(0.35) benign(0.013) TCGA-2Y-A9GW-01 3 178960728 178960728 A G KCNMB3 Silent p.I268I 0.18 TCGA-2Y-A9GW-01 3 196613318 196613318 G T SENP5 Silent p.V422V 0.16 TCGA-2Y-A9GW-01 3 38640520 38640520 C T SCN5A Missense_Mutation p.G638S 0.21 tolerated(0.75) benign(0.007) TCGA-2Y-A9GW-01 3 42299622 42299622 G A CCK Missense_Mutation p.R106C 0.13 deleterious(0) probably_damaging(0.989) TCGA-2Y-A9GW-01 3 49568955 49568955 G T DAG1 Missense_Mutation p.R337S 0.16 deleterious(0) probably_damaging(0.997) TCGA-2Y-A9GW-01 3 49722082 49722082 T C MST1 Missense_Mutation p.T593A 0.17 tolerated(0.46) benign(0.001) TCGA-2Y-A9GW-01 3 52824803 52824803 T C ITIH1 Missense_Mutation p.V787A 0.12 tolerated(0.18) possibly_damaging(0.863) TCGA-2Y-A9GW-01 3 64009114 64009114 G A PSMD6 5'UTR 0.24 TCGA-2Y-A9GW-01 3 73673733 73673733 A G PDZRN3 Missense_Mutation p.C82R 0.34 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9GW-01 4 123236737 123236737 T A KIAA1109 Missense_Mutation p.L3478Q 0.18 probably_damaging(0.997) TCGA-2Y-A9GW-01 4 159568324 159568324 C T RXFP1 Missense_Mutation p.A576V 0.23 deleterious(0.01) possibly_damaging(0.678) TCGA-2Y-A9GW-01 4 167020507 167020507 C A TLL1 Missense_Mutation p.P912Q 0.28 deleterious(0.03) probably_damaging(0.936) TCGA-2Y-A9GW-01 4 85626603 85626603 G A WDFY3 Missense_Mutation p.T2760I 0.20 deleterious(0) probably_damaging(0.995) TCGA-2Y-A9GW-01 4 92520403 92520403 T G CCSER1 3'UTR 0.23 TCGA-2Y-A9GW-01 5 109120580 109120580 T A MAN2A1 Silent p.A571A 0.21 TCGA-2Y-A9GW-01 5 139219625 139219625 G A PSD2 Missense_Mutation p.R661Q 0.15 tolerated(0.26) benign(0.006) TCGA-2Y-A9GW-01 5 140793290 140793290 C A PCDHGA10 Missense_Mutation p.S183Y 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.857) TCGA-2Y-A9GW-01 5 140799322 140799322 G C PCDHGB7 Missense_Mutation p.L632F 0.18 tolerated(0.21) probably_damaging(1) TCGA-2Y-A9GW-01 5 154320807 154320807 G - MRPL22 Frame_Shift_Del p.K22Sfs*53 0.20 TCGA-2Y-A9GW-01 5 176825095 176825095 G A SLC34A1 Nonsense_Mutation p.W576* 0.30 TCGA-2Y-A9GW-01 5 72179050 72179050 T A TNPO1 Missense_Mutation p.W381R 0.27 deleterious(0) probably_damaging(0.976) TCGA-2Y-A9GW-01 6 123105025 123105025 T C FABP7 3'UTR 0.23 TCGA-2Y-A9GW-01 6 126176369 126176369 A G NCOA7 Missense_Mutation p.K85R 0.22 deleterious(0.03) possibly_damaging(0.611) TCGA-2Y-A9GW-01 6 37281660 37281660 G T TBC1D22B Silent p.R386R 0.19 TCGA-2Y-A9GW-01 6 90572716 90572716 G T CASP8AP2 RNA 0.28 TCGA-2Y-A9GW-01 7 100285497 100285497 C G GIGYF1 Missense_Mutation p.E59Q 0.33 tolerated(0.1) unknown(0) TCGA-2Y-A9GW-01 7 111398823 111398823 G T DOCK4 Missense_Mutation p.P1387T 0.20 deleterious(0) probably_damaging(0.971) TCGA-2Y-A9GW-01 7 120906375 120906375 G T CPED1 Missense_Mutation p.G802V 0.11 deleterious(0.01) probably_damaging(0.972) TCGA-2Y-A9GW-01 7 121758381 121758381 C T AASS Missense_Mutation p.G223R 0.20 deleterious(0) probably_damaging(1) TCGA-2Y-A9GW-01 7 137801540 137801540 T G AKR1D1 3'UTR 0.28 TCGA-2Y-A9GW-01 7 24870414 24870414 G T OSBPL3 Missense_Mutation p.D619E 0.24 tolerated(0.11) benign(0.248) TCGA-2Y-A9GW-01 7 44240613 44240613 C T YKT6 5'Flank 0.36 TCGA-2Y-A9GW-01 7 74211700 74211700 C A GTF2IRD2 Silent p.G717G 0.35 TCGA-2Y-A9GW-01 7 75583458 75583458 A G POR Missense_Mutation p.K50E 0.07 deleterious(0.03) benign(0.025) TCGA-2Y-A9GW-01 8 101146559 101146559 G T FBXO43 Silent p.R570R 0.11 TCGA-2Y-A9GW-01 8 118159313 118159313 G A SLC30A8 Silent p.A64A 0.19 TCGA-2Y-A9GW-01 8 41478719 41478719 C T AGPAT6 3'UTR 0.44 TCGA-2Y-A9GW-01 8 73848214 73848214 T C KCNB2 Silent p.I208I 0.37 TCGA-2Y-A9GW-01 8 73848327 73848327 T C KCNB2 Missense_Mutation p.M246T 0.07 deleterious(0.03) possibly_damaging(0.574) TCGA-2Y-A9GW-01 9 71396923 71396923 C G FAM122A 3'UTR 0.21 TCGA-2Y-A9GW-01 X 119077649 119077649 G A NKAP 5'UTR 0.38 TCGA-2Y-A9GW-01 X 3573254 3573254 G A PRKX Silent p.L179L 0.44 TCGA-2Y-A9GW-01 X 43817918 43817918 G A NDP 5'UTR 0.37 TCGA-2Y-A9GX-01 10 118711419 118711419 C T KIAA1598 Splice_Site p.X178_splice 0.10 TCGA-2Y-A9GX-01 10 128153451 128153451 G A C10orf90 Missense_Mutation p.P450S 0.05 tolerated(0.06) benign(0.018) TCGA-2Y-A9GX-01 10 51592507 51592507 G C TIMM23 Silent p.L209L 0.11 TCGA-2Y-A9GX-01 10 51829449 51829449 C G FAM21A Missense_Mutation p.S90C 0.09 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9GX-01 10 5932246 5932246 G T FBXO18 5'Flank 0.17 TCGA-2Y-A9GX-01 11 101375497 101375497 C T TRPC6 Missense_Mutation p.R68Q 0.08 deleterious_low_confidence(0.05) benign(0.015) TCGA-2Y-A9GX-01 11 102824960 102824960 C G MMP13 Missense_Mutation p.A188P 0.12 deleterious(0) probably_damaging(1) TCGA-2Y-A9GX-01 11 113075222 113075222 C A NCAM1 Silent p.I173I 0.07 TCGA-2Y-A9GX-01 11 121384869 121384869 C - SORL1 Frame_Shift_Del p.Y350* 0.13 TCGA-2Y-A9GX-01 11 130784212 130784212 G A SNX19 Silent p.A541A 0.07 TCGA-2Y-A9GX-01 11 57258743 57258743 C A SLC43A1 Missense_Mutation p.D383Y 0.07 deleterious(0) probably_damaging(0.976) TCGA-2Y-A9GX-01 11 59814548 59814548 C T OOSP2 3'UTR 0.10 TCGA-2Y-A9GX-01 11 71907268 71907268 C T FOLR1 3'UTR 0.07 TCGA-2Y-A9GX-01 12 108603913 108603913 C T WSCD2 Silent p.G171G 0.11 TCGA-2Y-A9GX-01 12 85267040 85267040 A C SLC6A15 Missense_Mutation p.L312R 0.09 deleterious(0) probably_damaging(1) TCGA-2Y-A9GX-01 13 52715206 52715206 C T NEK3 Intron 0.13 TCGA-2Y-A9GX-01 13 78202112 78202112 A T SCEL Silent p.V553V 0.12 TCGA-2Y-A9GX-01 14 74196641 74196641 T - ELMSAN1 Frame_Shift_Del p.K599Nfs*42 0.10 TCGA-2Y-A9GX-01 15 25925038 25925038 C T ATP10A Missense_Mutation p.R1317K 0.12 tolerated(0.8) benign(0.001) TCGA-2Y-A9GX-01 15 43820605 43820605 G T MAP1A Missense_Mutation p.A2312S 0.05 benign(0.01) TCGA-2Y-A9GX-01 16 15596135 15596135 C G C16orf45 Intron 0.12 TCGA-2Y-A9GX-01 16 716677 716677 A C WDR90 Missense_Mutation p.Q1630P 0.12 tolerated(0.46) benign(0) TCGA-2Y-A9GX-01 16 820629 820629 G A MSLNL Missense_Mutation p.P866L 0.09 benign(0.071) TCGA-2Y-A9GX-01 16 87445309 87445309 C A ZCCHC14 Silent p.T869T 0.12 TCGA-2Y-A9GX-01 17 20921301 20921301 C T USP22 Missense_Mutation p.S215N 0.09 tolerated(0.12) benign(0.196) TCGA-2Y-A9GX-01 17 29325716 29325716 C T RNF135 Missense_Mutation p.S269F 0.11 deleterious(0) possibly_damaging(0.866) TCGA-2Y-A9GX-01 17 45216246 45216246 T C CDC27 Missense_Mutation p.I527M 0.20 tolerated(0.28) benign(0.055) TCGA-2Y-A9GX-01 17 49257976 49257976 G T MBTD1 Missense_Mutation p.S616R 0.07 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-2Y-A9GX-01 18 19085909 19085909 A G GREB1L Missense_Mutation p.Q1456R 0.05 deleterious(0) possibly_damaging(0.735) TCGA-2Y-A9GX-01 18 77895930 77895930 C T ADNP2 Silent p.P878P 0.09 TCGA-2Y-A9GX-01 1 113202330 113202330 C T CAPZA1 Missense_Mutation p.R172C 0.13 tolerated(0.08) probably_damaging(0.964) TCGA-2Y-A9GX-01 1 151512785 151512785 A T TUFT1 5'UTR 0.27 TCGA-2Y-A9GX-01 1 172548362 172548362 A G SUCO Missense_Mutation p.T485A 0.07 tolerated(0.37) benign(0.005) TCGA-2Y-A9GX-01 1 248685675 248685675 C A OR2G6 Missense_Mutation p.S243Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9GX-01 1 47606450 47606450 A C CYP4A22 Splice_Site p.X66_splice 0.14 TCGA-2Y-A9GX-01 1 93091357 93091357 G C EVI5 Missense_Mutation p.H538Q 0.09 tolerated(0.52) benign(0.04) TCGA-2Y-A9GX-01 1 94476366 94476366 G A ABCA4 Missense_Mutation p.L1902F 0.08 tolerated(0.3) benign(0.007) TCGA-2Y-A9GX-01 21 31709461 31709461 G T KRTAP27-1 Missense_Mutation p.L176M 0.05 tolerated(0.1) possibly_damaging(0.54) TCGA-2Y-A9GX-01 22 42607813 42607813 T C TCF20 Missense_Mutation p.S1167G 0.13 benign(0) TCGA-2Y-A9GX-01 22 50904662 50904662 C T SBF1 Missense_Mutation p.A272T 0.08 deleterious(0.03) possibly_damaging(0.87) TCGA-2Y-A9GX-01 2 15614384 15614384 C T NBAS Missense_Mutation p.G469E 0.09 tolerated(0.16) possibly_damaging(0.781) TCGA-2Y-A9GX-01 2 1926469 1926469 G A MYT1L Missense_Mutation p.R358C 0.17 tolerated_low_confidence(0.15) possibly_damaging(0.825) TCGA-2Y-A9GX-01 2 242075394 242075394 A G PASK Silent p.L400L 0.12 TCGA-2Y-A9GX-01 3 122645524 122645524 T C SEMA5B Missense_Mutation p.E338G 0.11 tolerated(0.07) probably_damaging(0.976) TCGA-2Y-A9GX-01 3 127327292 127327292 T A MCM2 Missense_Mutation p.L390Q 0.10 deleterious(0) possibly_damaging(0.664) TCGA-2Y-A9GX-01 3 186917601 186917601 A T RTP1 Missense_Mutation p.S179C 0.11 deleterious(0.04) possibly_damaging(0.823) TCGA-2Y-A9GX-01 3 48608074 48608074 C T COL7A1 Missense_Mutation p.V2448M 0.13 possibly_damaging(0.687) TCGA-2Y-A9GX-01 3 69225699 69225699 T C FRMD4B Missense_Mutation p.Y987C 0.07 tolerated_low_confidence(0.09) benign(0.023) TCGA-2Y-A9GX-01 3 75471288 75471288 C T FAM86DP RNA 0.14 TCGA-2Y-A9GX-01 4 2321941 2321941 C A ZFYVE28 Missense_Mutation p.M253I 0.16 tolerated(0.13) benign(0.443) TCGA-2Y-A9GX-01 4 82031670 82031670 G A PRKG2 Silent p.N624N 0.11 TCGA-2Y-A9GX-01 4 91549212 91549212 A T CCSER1 Missense_Mutation p.Q587H 0.12 tolerated(0.11) possibly_damaging(0.66) TCGA-2Y-A9GX-01 4 94693257 94693257 C T GRID2 Missense_Mutation p.H878Y 0.12 deleterious(0.02) probably_damaging(0.968) TCGA-2Y-A9GX-01 5 140867041 140867041 C - PCDHGC4 Frame_Shift_Del p.H768Tfs*19 0.10 TCGA-2Y-A9GX-01 5 150029676 150029676 G A SYNPO Silent p.L857L 0.15 TCGA-2Y-A9GX-01 5 71492333 71492333 A T MAP1B Nonsense_Mutation p.K1051* 0.13 TCGA-2Y-A9GX-01 5 71495123 71495123 A T MAP1B Nonsense_Mutation p.R1981* 0.22 TCGA-2Y-A9GX-01 5 79034864 79034864 T A CMYA5 Missense_Mutation p.S3426T 0.06 possibly_damaging(0.621) TCGA-2Y-A9GX-01 5 90052872 90052872 C G GPR98 Missense_Mutation p.A3945G 0.13 probably_damaging(0.983) TCGA-2Y-A9GX-01 6 25776866 25776866 G T SLC17A4 Missense_Mutation p.C344F 0.16 tolerated(0.52) benign(0.01) TCGA-2Y-A9GX-01 6 51890835 51890835 G C PKHD1 Missense_Mutation p.P1258R 0.11 deleterious(0.03) probably_damaging(0.936) TCGA-2Y-A9GX-01 6 65301270 65301270 G T EYS Missense_Mutation p.A1497D 0.07 deleterious(0) probably_damaging(0.979) TCGA-2Y-A9GX-01 7 100344290 100344290 C A ZAN Missense_Mutation p.P299H 0.11 possibly_damaging(0.669) TCGA-2Y-A9GX-01 7 12684320 12684320 G T SCIN Missense_Mutation p.G624V 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-2Y-A9GX-01 7 128450355 128450355 C T CCDC136 Nonsense_Mutation p.Q655* 0.12 TCGA-2Y-A9GX-01 7 133906659 133906659 A G LRGUK Missense_Mutation p.K658E 0.08 tolerated(0.09) benign(0.051) TCGA-2Y-A9GX-01 7 150739056 150739056 C T ABCB8 Silent p.V542V 0.17 TCGA-2Y-A9GX-01 7 43485103 43485103 G T HECW1 Missense_Mutation p.G778W 0.11 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-2Y-A9GX-01 7 4722290 4722290 C T FOXK1 Silent p.L117L 0.09 TCGA-2Y-A9GX-01 8 142222517 142222517 C A SLC45A4 Missense_Mutation p.V643F 0.23 deleterious(0) probably_damaging(0.995) TCGA-2Y-A9GX-01 8 87738767 87738767 A T CNGB3 Silent p.G110G 0.31 TCGA-2Y-A9GX-01 8 92346665 92346665 A G SLC26A7 Missense_Mutation p.D262G 0.30 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9GX-01 8 99208234 99208234 C G NIPAL2 Splice_Site p.X294_splice 0.11 TCGA-2Y-A9GX-01 9 113261408 113261408 C A SVEP1 Missense_Mutation p.G532W 0.06 probably_damaging(1) TCGA-2Y-A9GX-01 9 136310858 136310858 A C ADAMTS13 Silent p.P883P 0.18 TCGA-2Y-A9GX-01 9 140970351 140970351 G A CACNA1B Missense_Mutation p.M1646I 0.21 deleterious(0.01) possibly_damaging(0.607) TCGA-2Y-A9GX-01 9 82336746 82336746 C T TLE4 Silent p.V643V 0.11 TCGA-2Y-A9GX-01 X 108868238 108868238 G A KCNE1L Silent p.S4S 0.27 TCGA-2Y-A9GY-01 10 102798950 102798950 C T SFXN3 Silent p.P284P 0.32 TCGA-2Y-A9GY-01 10 135340964 135340964 T C CYP2E1 Missense_Mutation p.M22T 0.21 tolerated(0.41) benign(0.009) TCGA-2Y-A9GY-01 10 26446318 26446318 G C MYO3A Missense_Mutation p.R958P 0.12 deleterious(0) probably_damaging(0.992) TCGA-2Y-A9GY-01 10 30318601 30318601 C T KIAA1462 Missense_Mutation p.R159K 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-2Y-A9GY-01 11 110035069 110035069 A G ZC3H12C Missense_Mutation p.K420R 0.21 deleterious(0) benign(0.376) TCGA-2Y-A9GY-01 11 11394087 11394087 C A GALNT18 Missense_Mutation p.G356V 0.11 deleterious(0) possibly_damaging(0.748) TCGA-2Y-A9GY-01 11 133790637 133790637 C T IGSF9B Missense_Mutation p.V995I 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.593) TCGA-2Y-A9GY-01 11 2439523 2439523 G A TRPM5 Silent p.A260A 0.20 TCGA-2Y-A9GY-01 11 55681443 55681443 T C OR5W2 Missense_Mutation p.I206V 0.26 tolerated(0.21) benign(0.039) TCGA-2Y-A9GY-01 11 55703115 55703115 T A OR5I1 Missense_Mutation p.Q254H 0.30 tolerated(0.87) probably_damaging(0.998) TCGA-2Y-A9GY-01 11 59623355 59623355 G T TCN1 Nonsense_Mutation p.C308* 0.21 TCGA-2Y-A9GY-01 11 66010818 66010818 A G PACS1 3'UTR 0.18 TCGA-2Y-A9GY-01 11 6789852 6789852 G A OR2AG2 Missense_Mutation p.L113F 0.46 tolerated(0.56) probably_damaging(0.963) TCGA-2Y-A9GY-01 11 73686047 73686047 G A UCP2 3'UTR 0.26 TCGA-2Y-A9GY-01 11 89450720 89450720 G T TRIM77 Missense_Mutation p.V345L 0.19 tolerated(0.16) probably_damaging(0.929) TCGA-2Y-A9GY-01 12 103249042 103249042 G A PAH Missense_Mutation p.T193I 0.52 deleterious(0.01) benign(0.384) TCGA-2Y-A9GY-01 12 132325314 132325314 G A MMP17 Missense_Mutation p.V207M 0.19 deleterious(0.01) probably_damaging(0.966) TCGA-2Y-A9GY-01 12 6682294 6682294 G A CHD4 Silent p.L1835L 0.16 TCGA-2Y-A9GY-01 12 75784696 75784696 C T GLIPR1L2 5'Flank 0.14 TCGA-2Y-A9GY-01 12 80746176 80746176 G C OTOGL Missense_Mutation p.K1780N 0.08 deleterious(0.02) benign(0.011) TCGA-2Y-A9GY-01 12 8245601 8245601 A G NECAP1 Missense_Mutation p.H209R 0.48 tolerated(0.58) benign(0.017) TCGA-2Y-A9GY-01 12 98848733 98848733 C T SLC9A7P1 RNA 0.17 TCGA-2Y-A9GY-01 13 39542580 39542580 G C STOML3 Missense_Mutation p.S203C 0.47 deleterious(0) probably_damaging(0.935) TCGA-2Y-A9GY-01 14 104026516 104026516 C T BAG5 Missense_Mutation p.R370Q 0.34 tolerated(0.19) benign(0.034) TCGA-2Y-A9GY-01 14 62551004 62551004 C T SYT16 Silent p.L509L 0.59 TCGA-2Y-A9GY-01 14 80158522 80158522 C T NRXN3 Intron 0.17 TCGA-2Y-A9GY-01 15 34130221 34130221 C T RYR3 Silent p.L4014L 0.12 TCGA-2Y-A9GY-01 15 65421369 65421369 C A PDCD7 Splice_Site p.X337_splice 0.35 TCGA-2Y-A9GY-01 15 66021923 66021923 G A DENND4A Silent p.I420I 0.34 TCGA-2Y-A9GY-01 15 75647505 75647505 C T NEIL1 3'UTR 0.32 TCGA-2Y-A9GY-01 15 84868587 84868587 G A AC136698.1 3'Flank 0.50 TCGA-2Y-A9GY-01 15 88679766 88679766 C T NTRK3 Missense_Mutation p.G233S 0.38 tolerated(0.3) probably_damaging(0.925) TCGA-2Y-A9GY-01 16 15131858 15131858 G C NTAN1 3'UTR 0.18 TCGA-2Y-A9GY-01 16 2814152 2814152 C G SRRM2 Missense_Mutation p.T1208S 0.13 benign(0.184) TCGA-2Y-A9GY-01 16 31143497 31143497 G T PRSS8 Missense_Mutation p.Q289K 0.33 tolerated(0.08) benign(0.001) TCGA-2Y-A9GY-01 16 3336206 3336206 C T ZNF263 Intron 0.37 TCGA-2Y-A9GY-01 16 55844912 55844912 C G CES1 Missense_Mutation p.S366T 0.51 tolerated(0.21) benign(0.001) TCGA-2Y-A9GY-01 16 84203706 84203706 G A DNAAF1 Silent p.S424S 0.48 TCGA-2Y-A9GY-01 17 21319642 21319642 G A KCNJ12 Missense_Mutation p.V330M 0.15 tolerated(0.09) probably_damaging(0.942) TCGA-2Y-A9GY-01 17 27014460 27014460 G T SUPT6H Nonsense_Mutation p.G993* 0.33 TCGA-2Y-A9GY-01 17 40689495 40689495 G C NAGLU Missense_Mutation p.D155H 0.40 deleterious(0) probably_damaging(1) TCGA-2Y-A9GY-01 17 46670974 46670974 T G HOXB5 Missense_Mutation p.Y24S 0.13 deleterious(0) probably_damaging(0.996) TCGA-2Y-A9GY-01 17 48941376 48941376 C A TOB1 Translation_Start_Site p.M1? 0.57 deleterious(0) probably_damaging(0.996) TCGA-2Y-A9GY-01 17 56665261 56665261 T C TEX14 Missense_Mutation p.T906A 0.16 tolerated(0.66) benign(0.003) TCGA-2Y-A9GY-01 17 72436225 72436225 G A GPRC5C Missense_Mutation p.V149M 0.52 deleterious(0) probably_damaging(0.992) TCGA-2Y-A9GY-01 17 7578211 7578211 C A TP53 Missense_Mutation p.R213L 0.47 deleterious(0) probably_damaging(1) TCGA-2Y-A9GY-01 18 46570412 46570412 G C DYM 3'UTR 0.35 TCGA-2Y-A9GY-01 18 48452204 48452204 T C ME2 Missense_Mutation p.F417S 0.41 deleterious(0) probably_damaging(1) TCGA-2Y-A9GY-01 19 10610255 10610255 A C KEAP1 Missense_Mutation p.V152G 0.41 deleterious(0) probably_damaging(1) TCGA-2Y-A9GY-01 19 10943770 10943770 G T DNM2 3'Flank 0.49 TCGA-2Y-A9GY-01 19 17571528 17571528 C A NXNL1 Missense_Mutation p.V51L 0.51 tolerated(0.22) benign(0.007) TCGA-2Y-A9GY-01 19 38377966 38377966 G C WDR87 Missense_Mutation p.I2076M 0.16 possibly_damaging(0.575) TCGA-2Y-A9GY-01 19 55944926 55944926 G T SHISA7 Missense_Mutation p.A405E 0.33 tolerated(1) benign(0.016) TCGA-2Y-A9GY-01 1 111060812 111060812 G T KCNA10 Missense_Mutation p.R200S 0.28 deleterious(0) benign(0.2) TCGA-2Y-A9GY-01 1 150936915 150936915 G C CERS2 3'Flank 0.30 TCGA-2Y-A9GY-01 1 157803136 157803136 G A CD5L Silent p.F295F 0.49 TCGA-2Y-A9GY-01 1 1686825 1686825 G TTTCC NADK Frame_Shift_Ins p.Q371Gfs*37 0.40 TCGA-2Y-A9GY-01 1 29314060 29314060 A G EPB41 Silent p.E37E 0.28 TCGA-2Y-A9GY-01 1 44457670 44457670 G A CCDC24 Silent p.R40R 0.40 TCGA-2Y-A9GY-01 1 91841093 91841093 G T HFM1 Silent p.P529P 0.19 TCGA-2Y-A9GY-01 20 2443047 2443047 T C SNRPB Intron 0.35 TCGA-2Y-A9GY-01 20 42979420 42979420 C G R3HDML Missense_Mutation p.F250L 0.23 tolerated(1) benign(0) TCGA-2Y-A9GY-01 20 61847279 61847279 C A YTHDF1 5'UTR 0.33 TCGA-2Y-A9GY-01 21 44272435 44272435 C A WDR4 Splice_Site p.X326_splice 0.16 TCGA-2Y-A9GY-01 22 38228664 38228664 T C ANKRD54 Missense_Mutation p.M270V 0.38 tolerated(0.56) benign(0.004) TCGA-2Y-A9GY-01 2 131524582 131524582 C T AMER3 3'UTR 0.06 TCGA-2Y-A9GY-01 2 138163316 138163316 C G THSD7B Silent p.S878S 0.14 TCGA-2Y-A9GY-01 2 158272222 158272222 A G CYTIP Silent p.H349H 0.47 TCGA-2Y-A9GY-01 2 192012877 192012877 A T STAT4 Missense_Mutation p.V18E 0.46 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9GY-01 2 231115713 231115714 TC - SP140 Frame_Shift_Del p.S332Rfs*4 0.16 TCGA-2Y-A9GY-01 2 231115716 231115716 G - SP140 Frame_Shift_Del p.E333Kfs*15 0.16 TCGA-2Y-A9GY-01 2 233759597 233759597 C T NGEF Silent p.A286A 0.21 TCGA-2Y-A9GY-01 2 239161961 239161961 C T PER2 Silent p.A901A 0.08 TCGA-2Y-A9GY-01 2 24149798 24149798 G A ATAD2B 5'UTR 0.16 TCGA-2Y-A9GY-01 2 33042572 33042572 A - TTC27 Frame_Shift_Del p.M787Cfs*32 0.20 TCGA-2Y-A9GY-01 2 64189527 64189527 A C VPS54 Silent p.S225S 0.50 TCGA-2Y-A9GY-01 2 71740979 71740979 C A DYSF Nonsense_Mutation p.Y229* 0.46 TCGA-2Y-A9GY-01 2 73479950 73479950 A T CCT7 Silent p.T531T 0.44 TCGA-2Y-A9GY-01 3 108818307 108818307 G A MORC1 Silent p.S107S 0.30 TCGA-2Y-A9GY-01 3 119263513 119263513 A G CD80 Missense_Mutation p.I101T 0.41 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9GY-01 3 119886025 119886025 A C GPR156 Missense_Mutation p.F767V 0.45 deleterious(0) probably_damaging(0.997) TCGA-2Y-A9GY-01 3 161221396 161221396 A T OTOL1 Missense_Mutation p.Y367F 0.22 deleterious(0.03) probably_damaging(0.988) TCGA-2Y-A9GY-01 3 57882955 57882955 G A SLMAP Intron 0.24 TCGA-2Y-A9GY-01 5 128977574 128977574 G T ADAMTS19 Missense_Mutation p.W592L 0.33 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9GY-01 5 131310509 131310509 C G ACSL6 Intron 0.49 TCGA-2Y-A9GY-01 5 134705791 134705791 T C H2AFY Missense_Mutation p.K72E 0.44 deleterious(0) probably_damaging(0.966) TCGA-2Y-A9GY-01 5 138737606 138737606 T C SPATA24 Silent p.K104K 0.07 TCGA-2Y-A9GY-01 5 141060026 141060026 C A ARAP3 Missense_Mutation p.A10S 0.53 tolerated(0.13) benign(0.374) TCGA-2Y-A9GY-01 5 16067614 16067614 G T MARCH11 Nonsense_Mutation p.S392* 0.35 TCGA-2Y-A9GY-01 6 100896042 100896042 A C SIM1 Missense_Mutation p.L277R 0.32 deleterious(0) possibly_damaging(0.862) TCGA-2Y-A9GY-01 6 102516350 102516350 C T GRIK2 Silent p.N897N 0.38 TCGA-2Y-A9GY-01 6 128222087 128222087 T G THEMIS 5'UTR 0.33 TCGA-2Y-A9GY-01 6 46657236 46657236 A G TDRD6 Silent p.P457P 0.49 TCGA-2Y-A9GY-01 6 47200685 47200685 T C TNFRSF21 Missense_Mutation p.D595G 0.21 deleterious(0) probably_damaging(0.979) TCGA-2Y-A9GY-01 6 64289208 64289208 T C PTP4A1 Missense_Mutation p.Y126H 0.07 tolerated(0.12) benign(0.161) TCGA-2Y-A9GY-01 7 99277529 99277529 C T CYP3A5 5'UTR 0.30 TCGA-2Y-A9GY-01 8 106813325 106813325 G A ZFPM2 Missense_Mutation p.V339I 0.21 tolerated(0.85) benign(0.004) TCGA-2Y-A9GY-01 8 113323351 113323351 T C CSMD3 Missense_Mutation p.I2581V 0.47 tolerated(0.59) benign(0.003) TCGA-2Y-A9GY-01 8 144680335 144680335 C A TIGD5 Missense_Mutation p.L88M 0.32 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9GY-01 8 144810307 144810307 G - FAM83H Frame_Shift_Del p.R442Afs*103 0.18 TCGA-2Y-A9GY-01 8 17812976 17812976 C T PCM1 Intron 0.28 TCGA-2Y-A9GY-01 8 19176973 19176973 C G SH2D4A 5'UTR 0.21 TCGA-2Y-A9GY-01 8 3046528 3046528 A G CSMD1 Missense_Mutation p.C1802R 0.30 probably_damaging(0.999) TCGA-2Y-A9GY-01 9 113261434 113261434 G A SVEP1 Missense_Mutation p.T523M 0.40 benign(0.026) TCGA-2Y-A9GY-01 9 71687696 71687696 A G FXN 3'UTR 0.12 TCGA-2Y-A9GY-01 9 99113414 99113414 G A SLC35D2 Silent p.A153A 0.33 TCGA-2Y-A9GY-01 X 103420443 103420443 C G FAM199X Missense_Mutation p.P113A 0.18 tolerated_low_confidence(0.06) possibly_damaging(0.608) TCGA-2Y-A9GY-01 X 110654106 110654106 G T DCX Missense_Mutation p.Q33K 0.38 deleterious_low_confidence(0) unknown(0) TCGA-2Y-A9GY-01 X 145075809 145075809 C T MIR890 RNA 0.13 TCGA-2Y-A9GY-01 X 20211662 20211662 A C RPS6KA3 Missense_Mutation p.L179R 0.27 deleterious(0) probably_damaging(1) TCGA-2Y-A9GY-01 X 74295382 74295382 T C ABCB7 Missense_Mutation p.R225G 0.22 deleterious(0.05) possibly_damaging(0.545) TCGA-2Y-A9GZ-01 10 121616948 121616948 G A MCMBP Nonsense_Mutation p.Q111* 0.56 TCGA-2Y-A9GZ-01 10 55721536 55721536 A G PCDH15 Silent p.N995N 0.04 TCGA-2Y-A9GZ-01 10 64159446 64159446 C A ZNF365 Intron 0.20 TCGA-2Y-A9GZ-01 11 117973865 117973865 C T TMPRSS4 Silent p.H69H 0.18 TCGA-2Y-A9GZ-01 11 48266850 48266850 C A OR4X2 Nonsense_Mutation p.Y65* 0.18 TCGA-2Y-A9GZ-01 11 57958693 57958693 A G OR9Q2 Missense_Mutation p.H244R 0.40 deleterious(0) probably_damaging(1) TCGA-2Y-A9GZ-01 11 65089267 65089267 A G CDC42EP2 3'UTR 0.54 TCGA-2Y-A9GZ-01 11 85411633 85411633 C A SYTL2 Missense_Mutation p.A1098S 0.46 tolerated(0.38) benign(0.196) TCGA-2Y-A9GZ-01 11 94800454 94800454 A T SRSF8 Missense_Mutation p.T22S 0.22 tolerated_low_confidence(0.24) benign(0.316) TCGA-2Y-A9GZ-01 12 122691554 122691554 C T B3GNT4 Silent p.P252P 0.40 TCGA-2Y-A9GZ-01 12 12815252 12815252 C T GPR19 Missense_Mutation p.S44N 0.30 tolerated_low_confidence(0.55) benign(0.001) TCGA-2Y-A9GZ-01 12 14613680 14613680 A T ATF7IP Missense_Mutation p.T804S 0.30 deleterious_low_confidence(0) unknown(0) TCGA-2Y-A9GZ-01 12 15747937 15747937 A T PTPRO Missense_Mutation p.I1205F 0.39 deleterious(0.05) possibly_damaging(0.622) TCGA-2Y-A9GZ-01 12 53565528 53565528 C T CSAD Intron 0.58 TCGA-2Y-A9GZ-01 12 6879777 6879777 C T PTMS 3'UTR 0.11 TCGA-2Y-A9GZ-01 12 81719606 81719606 C A PPFIA2 Silent p.G864G 0.39 TCGA-2Y-A9GZ-01 13 38357491 38357491 T G TRPC4 5'UTR 0.31 TCGA-2Y-A9GZ-01 13 96599334 96599334 G A UGGT2 Missense_Mutation p.A545V 0.46 tolerated(0.23) benign(0.007) TCGA-2Y-A9GZ-01 14 20841220 20841226 CTTGATT - TEP1 Frame_Shift_Del p.N2299Lfs*4 0.36 TCGA-2Y-A9GZ-01 14 33293348 33293348 A T AKAP6 Missense_Mutation p.Y2110F 0.35 deleterious(0) probably_damaging(0.993) TCGA-2Y-A9GZ-01 14 53345391 53345391 A C FERMT2 Missense_Mutation p.I291S 0.49 deleterious(0) possibly_damaging(0.637) TCGA-2Y-A9GZ-01 14 70990870 70990870 C G ADAM20 Missense_Mutation p.W252S 0.45 deleterious(0) possibly_damaging(0.851) TCGA-2Y-A9GZ-01 14 81251871 81251871 C A CEP128 Nonsense_Mutation p.E527* 0.18 TCGA-2Y-A9GZ-01 15 29346197 29346197 C T APBA2 Missense_Mutation p.P37L 0.18 deleterious_low_confidence(0) benign(0.097) TCGA-2Y-A9GZ-01 15 33256458 33256458 G T FMN1 Missense_Mutation p.S773R 0.22 tolerated(0.58) benign(0.108) TCGA-2Y-A9GZ-01 15 56385627 56385627 G A RFX7 Silent p.C1433C 0.14 TCGA-2Y-A9GZ-01 15 63571387 63571387 G A APH1B Silent p.L47L 0.27 TCGA-2Y-A9GZ-01 15 76191767 76191767 G A UBE2Q2 Splice_Site p.X366_splice 0.71 TCGA-2Y-A9GZ-01 16 15501993 15501993 G A MPV17L 3'UTR 0.23 TCGA-2Y-A9GZ-01 16 1878098 1878098 G A FAHD1 Intron 0.43 TCGA-2Y-A9GZ-01 16 27549677 27549677 C A GTF3C1 Missense_Mutation p.R144S 0.29 deleterious(0.03) possibly_damaging(0.662) TCGA-2Y-A9GZ-01 17 21321963 21321963 C T KCNJ12 3'UTR 0.32 TCGA-2Y-A9GZ-01 17 26900924 26900924 G A ALDOC Silent p.S276S 0.32 TCGA-2Y-A9GZ-01 17 28758889 28758889 C T CPD Missense_Mutation p.S706F 0.06 deleterious(0.01) probably_damaging(0.993) TCGA-2Y-A9GZ-01 17 30816780 30816780 T - CDK5R1 3'UTR 0.22 TCGA-2Y-A9GZ-01 17 35454834 35454840 ATGGTAA - ACACA Frame_Shift_Del p.Y2216Rfs*2 0.17 TCGA-2Y-A9GZ-01 17 4642833 4642833 C A CXCL16 5'UTR 0.58 TCGA-2Y-A9GZ-01 17 57181690 57181690 A T TRIM37 Silent p.P29P 0.50 TCGA-2Y-A9GZ-01 17 60045496 60045496 C A MED13 Missense_Mutation p.G1364V 0.12 deleterious(0) probably_damaging(0.989) TCGA-2Y-A9GZ-01 17 74151751 74151751 G A RNF157 Silent p.D530D 0.30 TCGA-2Y-A9GZ-01 17 79212575 79212575 G C ENTHD2 Intron 0.16 TCGA-2Y-A9GZ-01 18 22775123 22775123 C A ZNF521 Splice_Site p.X1220_splice 0.15 TCGA-2Y-A9GZ-01 18 47566657 47566657 G A MYO5B Missense_Mutation p.R56C 0.25 deleterious(0.04) benign(0.008) TCGA-2Y-A9GZ-01 19 19032527 19032527 C A DDX49 Missense_Mutation p.L99M 0.28 deleterious(0.04) probably_damaging(0.955) TCGA-2Y-A9GZ-01 19 2042789 2042789 C T MKNK2 Missense_Mutation p.A192T 0.49 deleterious(0) probably_damaging(0.959) TCGA-2Y-A9GZ-01 19 3151715 3151715 C A GNA15 Missense_Mutation p.H166N 0.22 tolerated(0.44) benign(0.004) TCGA-2Y-A9GZ-01 19 42797243 42797243 C T CIC Missense_Mutation p.P1202L 0.31 benign(0.081) TCGA-2Y-A9GZ-01 19 51960468 51960468 T C SIGLEC8 Missense_Mutation p.T251A 0.22 tolerated(0.22) benign(0.376) TCGA-2Y-A9GZ-01 19 55670499 55670499 C A DNAAF3 Missense_Mutation p.E586D 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.477) TCGA-2Y-A9GZ-01 19 57328390 57328390 G T PEG3 Missense_Mutation p.H474N 0.04 deleterious(0.01) probably_damaging(1) TCGA-2Y-A9GZ-01 1 109191343 109191343 G A HENMT1 Silent p.L343L 0.47 TCGA-2Y-A9GZ-01 1 109607054 109607054 C T TAF13 3'UTR 0.28 TCGA-2Y-A9GZ-01 1 11848591 11848591 C T MTHFR 3'UTR 0.16 TCGA-2Y-A9GZ-01 1 12919905 12919905 G T PRAMEF2 Silent p.T215T 0.21 TCGA-2Y-A9GZ-01 1 1425945 1425945 G T ATAD3B Missense_Mutation p.R503L 0.42 deleterious(0.04) possibly_damaging(0.629) TCGA-2Y-A9GZ-01 1 147096555 147096555 C A BCL9 Missense_Mutation p.P1359H 0.29 deleterious(0.02) benign(0.387) TCGA-2Y-A9GZ-01 1 151315600 151315600 G A RFX5 Missense_Mutation p.R305W 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2Y-A9GZ-01 1 16918699 16918699 C A NBPF1 5'UTR 0.21 TCGA-2Y-A9GZ-01 1 181726159 181726159 T C CACNA1E Missense_Mutation p.V1409A 0.20 deleterious(0) benign(0.418) TCGA-2Y-A9GZ-01 1 197898219 197898219 C A LHX9 Missense_Mutation p.L342I 0.60 tolerated(0.15) benign(0.157) TCGA-2Y-A9GZ-01 1 201355885 201355885 T C LAD1 Missense_Mutation p.I202V 0.39 tolerated(0.92) benign(0.001) TCGA-2Y-A9GZ-01 1 201981093 201981093 A G ELF3 Missense_Mutation p.S58G 0.34 deleterious(0.05) possibly_damaging(0.856) TCGA-2Y-A9GZ-01 1 20879246 20879246 G A FAM43B 5'UTR 0.41 TCGA-2Y-A9GZ-01 1 215798956 215798956 A C USH2A 3'UTR 0.42 TCGA-2Y-A9GZ-01 1 25729125 25729125 A T RHCE Missense_Mutation p.L150I 0.04 deleterious(0.03) benign(0.013) TCGA-2Y-A9GZ-01 1 36359333 36359333 G T AGO1 Missense_Mutation p.G191W 0.40 deleterious(0) probably_damaging(1) TCGA-2Y-A9GZ-01 1 50572025 50572025 G A ELAVL4 Missense_Mutation p.R7K 0.50 tolerated_low_confidence(0.3) benign(0.046) TCGA-2Y-A9GZ-01 1 59043008 59043008 G A TACSTD2 5'UTR 0.51 TCGA-2Y-A9GZ-01 1 84543803 84543803 C T RP11-486G15.2 5'Flank 0.12 TCGA-2Y-A9GZ-01 1 85555822 85555822 C T WDR63 Missense_Mutation p.T255M 0.21 deleterious(0.01) probably_damaging(0.915) TCGA-2Y-A9GZ-01 20 1115886 1115886 C G PSMF1 Missense_Mutation p.A163G 0.25 tolerated(0.41) benign(0.012) TCGA-2Y-A9GZ-01 20 2291690 2291690 G C TGM3 Missense_Mutation p.R152T 0.47 deleterious(0.01) probably_damaging(0.975) TCGA-2Y-A9GZ-01 20 2843248 2843248 G C VPS16 Missense_Mutation p.E365D 0.52 tolerated(0.06) possibly_damaging(0.585) TCGA-2Y-A9GZ-01 20 43550238 43550238 G T PABPC1L Missense_Mutation p.V248L 0.46 deleterious(0) possibly_damaging(0.908) TCGA-2Y-A9GZ-01 20 46262325 46262326 - T NCOA3 Frame_Shift_Ins p.S306* 0.17 TCGA-2Y-A9GZ-01 20 60791440 60791440 G A HRH3 Silent p.L320L 0.42 TCGA-2Y-A9GZ-01 20 9560805 9560805 A G PAK7 Missense_Mutation p.M326T 0.22 tolerated(0.64) benign(0) TCGA-2Y-A9GZ-01 21 30409652 30409652 T C USP16 Silent p.S168S 0.19 TCGA-2Y-A9GZ-01 22 39884130 39884130 G A MGAT3 Missense_Mutation p.G260S 0.14 deleterious(0.01) possibly_damaging(0.74) TCGA-2Y-A9GZ-01 2 109003792 109003792 G A SULT1C4 Nonsense_Mutation p.W271* 0.28 TCGA-2Y-A9GZ-01 2 128244217 128244217 C A IWS1 Missense_Mutation p.G747V 0.29 deleterious(0.02) probably_damaging(0.941) TCGA-2Y-A9GZ-01 2 168106277 168106277 A G XIRP2 Missense_Mutation p.N2792S 0.28 benign(0.003) TCGA-2Y-A9GZ-01 2 179632561 179632561 T C TTN Silent p.G3132G 0.24 TCGA-2Y-A9GZ-01 2 226447694 226447694 G T NYAP2 Missense_Mutation p.G521C 0.32 deleterious(0) probably_damaging(1) TCGA-2Y-A9GZ-01 2 230672462 230672462 A T TRIP12 Missense_Mutation p.W772R 0.32 deleterious(0) probably_damaging(0.963) TCGA-2Y-A9GZ-01 2 28975008 28975008 G T PPP1CB Silent p.L6L 0.66 TCGA-2Y-A9GZ-01 2 5833474 5833474 C T SOX11 Silent p.G207G 0.60 TCGA-2Y-A9GZ-01 3 10083389 10083389 T C FANCD2 Silent p.L260L 0.31 TCGA-2Y-A9GZ-01 3 109128967 109128967 T A RP11-702L6.4 RNA 0.27 TCGA-2Y-A9GZ-01 3 112198492 112198492 C A BTLA Missense_Mutation p.W71C 0.04 deleterious(0) probably_damaging(1) TCGA-2Y-A9GZ-01 3 138009428 138009428 C A ARMC8 Silent p.I631I 0.36 TCGA-2Y-A9GZ-01 3 167035353 167035353 G A ZBBX Missense_Mutation p.P339L 0.34 tolerated(0.05) benign(0.323) TCGA-2Y-A9GZ-01 3 182989099 182989099 A T B3GNT5 3'UTR 0.20 TCGA-2Y-A9GZ-01 3 50334886 50334886 C T NAT6 Silent p.L25L 0.20 TCGA-2Y-A9GZ-01 4 122602881 122602881 A G ANXA5 Silent p.I113I 0.28 TCGA-2Y-A9GZ-01 4 164246911 164246911 C G NPY1R Splice_Site p.X234_splice 0.45 TCGA-2Y-A9GZ-01 4 3241612 3241612 G C HTT Missense_Mutation p.Q3085H 0.18 benign(0.002) TCGA-2Y-A9GZ-01 4 57522168 57522168 G A HOPX Missense_Mutation p.T18I 0.27 tolerated_low_confidence(0.11) unknown(0) TCGA-2Y-A9GZ-01 4 74283302 74283306 AGAGG - ALB Frame_Shift_Del p.E449Lfs*13 0.26 TCGA-2Y-A9GZ-01 4 955623 955623 C T DGKQ Splice_Site p.X772_splice 0.33 TCGA-2Y-A9GZ-01 5 102465135 102465135 A G PPIP5K2 5'UTR 0.40 TCGA-2Y-A9GZ-01 5 112179485 112179485 G C APC Missense_Mutation p.D2732H 0.21 probably_damaging(0.926) TCGA-2Y-A9GZ-01 5 127645697 127645697 G A FBN2 Silent p.V1726V 0.44 TCGA-2Y-A9GZ-01 5 129520291 129520291 A T CHSY3 Missense_Mutation p.S486C 0.44 deleterious(0.01) probably_damaging(0.95) TCGA-2Y-A9GZ-01 5 137475588 137475588 C A BRD8 3'UTR 0.19 TCGA-2Y-A9GZ-01 5 140264043 140264043 C A PCDHA13 Silent p.G730G 0.21 TCGA-2Y-A9GZ-01 5 160059337 160059337 A G ATP10B Silent p.D473D 0.19 TCGA-2Y-A9GZ-01 5 162866373 162866373 T C CCNG1 Silent p.I37I 0.46 TCGA-2Y-A9GZ-01 5 168114043 168114043 G A SLIT3 Silent p.H1085H 0.04 TCGA-2Y-A9GZ-01 5 169310696 169310696 T A FAM196B Missense_Mutation p.Q69H 0.25 deleterious(0.03) possibly_damaging(0.789) TCGA-2Y-A9GZ-01 5 5463510 5463510 C G KIAA0947 Missense_Mutation p.Q1355E 0.15 tolerated(1) benign(0.004) TCGA-2Y-A9GZ-01 5 68728859 68728859 G A MARVELD2 Missense_Mutation p.R481K 0.37 tolerated(1) benign(0.012) TCGA-2Y-A9GZ-01 6 111543223 111543223 C A SLC16A10 Missense_Mutation p.L445M 0.11 tolerated(0.06) possibly_damaging(0.824) TCGA-2Y-A9GZ-01 6 119296226 119296226 T C FAM184A Missense_Mutation p.I911V 0.33 tolerated(1) benign(0.002) TCGA-2Y-A9GZ-01 6 147049813 147049813 A G ADGB Missense_Mutation p.D819G 0.39 deleterious(0.03) possibly_damaging(0.735) TCGA-2Y-A9GZ-01 6 163984603 163984603 C T QKI Silent p.V262V 0.76 TCGA-2Y-A9GZ-01 6 27368930 27368930 A T ZNF391 Missense_Mutation p.I261F 0.22 tolerated(0.06) benign(0.102) TCGA-2Y-A9GZ-01 6 29080176 29080176 C T OR2J3 Missense_Mutation p.P170L 0.47 deleterious(0) probably_damaging(0.947) TCGA-2Y-A9GZ-01 6 29431843 29431843 C T OR2H1 3'UTR 0.32 TCGA-2Y-A9GZ-01 6 33164330 33164330 C A RXRB Missense_Mutation p.A292S 0.46 tolerated(0.56) benign(0.004) TCGA-2Y-A9GZ-01 6 37614119 37614120 - A MDGA1 Frame_Shift_Ins p.V695Gfs*24 0.13 TCGA-2Y-A9GZ-01 6 84317435 84317435 A T SNAP91 Silent p.S335S 0.76 TCGA-2Y-A9GZ-01 7 114563013 114563013 C G MDFIC Missense_Mutation p.H84Q 0.36 tolerated_low_confidence(0.39) benign(0.402) TCGA-2Y-A9GZ-01 7 134896232 134896232 G A WDR91 Missense_Mutation p.T8I 0.46 tolerated(0.4) benign(0.008) TCGA-2Y-A9GZ-01 7 143053918 143053918 A C FAM131B Missense_Mutation p.S270A 0.24 tolerated(0.21) benign(0.008) TCGA-2Y-A9GZ-01 7 154561209 154561209 T C DPP6 Silent p.R322R 0.18 TCGA-2Y-A9GZ-01 7 50680499 50680499 A T GRB10 Nonsense_Mutation p.L378* 0.44 TCGA-2Y-A9GZ-01 7 82584100 82584100 T A PCLO Nonsense_Mutation p.K2057* 0.15 TCGA-2Y-A9GZ-01 8 118533157 118533157 G T MED30 Silent p.G14G 0.50 TCGA-2Y-A9GZ-01 9 130482363 130482363 T C TTC16 Missense_Mutation p.C145R 0.10 deleterious(0) possibly_damaging(0.903) TCGA-2Y-A9GZ-01 9 14719997 14719997 T A CER1 3'UTR 0.22 TCGA-2Y-A9GZ-01 9 79244125 79244125 A - PRUNE2 Frame_Shift_Del p.P3045Qfs*11 0.33 TCGA-2Y-A9GZ-01 X 149840127 149840127 G T MTM1 3'UTR 0.36 TCGA-2Y-A9GZ-01 X 150067008 150067008 G T CD99L2 Silent p.T18T 0.51 TCGA-2Y-A9GZ-01 X 152113993 152113993 A G ZNF185 Missense_Mutation p.E496G 0.16 deleterious(0.02) benign(0.39) TCGA-2Y-A9GZ-01 X 153282005 153282005 G T IRAK1 Missense_Mutation p.S373R 0.22 deleterious(0) possibly_damaging(0.633) TCGA-2Y-A9GZ-01 X 2947346 2947346 C T ARSH Missense_Mutation p.H420Y 0.43 deleterious(0.01) probably_damaging(0.93) TCGA-2Y-A9GZ-01 X 37668941 37668941 C G CYBB Missense_Mutation p.P528R 0.17 deleterious(0) benign(0.213) TCGA-2Y-A9GZ-01 X 54955556 54955556 G T TRO Missense_Mutation p.S800I 0.36 deleterious_low_confidence(0.03) unknown(0) TCGA-2Y-A9GZ-01 X 76763695 76763695 A T ATRX 3'UTR 0.33 TCGA-2Y-A9GZ-01 X 79282319 79282319 C T TBX22 Silent p.S250S 0.46 TCGA-2Y-A9H0-01 10 106153097 106153097 C G CCDC147 Missense_Mutation p.T513R 0.41 deleterious(0.05) benign(0.243) TCGA-2Y-A9H0-01 10 119133943 119133943 G A PDZD8 Nonsense_Mutation p.Q266* 0.45 TCGA-2Y-A9H0-01 10 18250708 18250708 G A SLC39A12 Missense_Mutation p.E154K 0.43 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9H0-01 10 29782297 29782297 G A SVIL Missense_Mutation p.L1289F 0.33 deleterious(0) probably_damaging(0.98) TCGA-2Y-A9H0-01 10 37505130 37505130 T A ANKRD30A Missense_Mutation p.I908N 0.38 deleterious(0) possibly_damaging(0.781) TCGA-2Y-A9H0-01 10 48388858 48388858 G A RBP3 Missense_Mutation p.R674C 0.48 deleterious(0.01) possibly_damaging(0.689) TCGA-2Y-A9H0-01 10 76980582 76980582 A G VDAC2 Silent p.G161G 0.44 TCGA-2Y-A9H0-01 10 79397504 79397504 C T KCNMA1 5'Flank 0.19 TCGA-2Y-A9H0-01 11 123471213 123471213 A G GRAMD1B Missense_Mutation p.Y193C 0.25 deleterious(0) possibly_damaging(0.798) TCGA-2Y-A9H0-01 11 125774293 125774304 CGCGGGCGCGGA - DDX25 5'UTR 0.35 TCGA-2Y-A9H0-01 11 134188858 134188859 - A GLB1L3 3'UTR 0.36 TCGA-2Y-A9H0-01 11 62334458 62334458 G A EEF1G Missense_Mutation p.P226L 0.32 tolerated(0.06) benign(0.035) TCGA-2Y-A9H0-01 11 64812742 64812742 G A NAALADL1 3'UTR 0.38 TCGA-2Y-A9H0-01 11 8662363 8662363 C T TRIM66 Missense_Mutation p.C373Y 0.48 tolerated(0.19) probably_damaging(0.998) TCGA-2Y-A9H0-01 11 88061352 88061352 A T CTSC Intron 0.42 TCGA-2Y-A9H0-01 12 109853348 109853348 C T MYO1H Missense_Mutation p.P491L 0.33 tolerated(0.66) benign(0.156) TCGA-2Y-A9H0-01 12 41421673 41421673 C G CNTN1 Missense_Mutation p.P909A 0.45 deleterious(0) probably_damaging(0.983) TCGA-2Y-A9H0-01 12 48152383 48152383 G T RAPGEF3 5'UTR 0.43 TCGA-2Y-A9H0-01 12 6438604 6438604 G A TNFRSF1A Silent p.R414R 0.41 TCGA-2Y-A9H0-01 12 78579428 78579428 C A NAV3 Missense_Mutation p.R1892S 0.65 tolerated(0.07) benign(0.028) TCGA-2Y-A9H0-01 12 81839447 81839447 C T PPFIA2 Missense_Mutation p.R153K 0.66 deleterious(0) probably_damaging(0.99) TCGA-2Y-A9H0-01 12 9013751 9013751 T A A2ML1 Silent p.G1120G 0.34 TCGA-2Y-A9H0-01 12 91550965 91550965 T A DCN Missense_Mutation p.E180V 0.64 deleterious(0) probably_damaging(0.996) TCGA-2Y-A9H0-01 12 93147989 93147989 G A PLEKHG7 Missense_Mutation p.A147T 0.21 tolerated(1) benign(0.001) TCGA-2Y-A9H0-01 13 109792761 109792761 G T MYO16 Missense_Mutation p.A1379S 0.35 tolerated_low_confidence(0.46) benign(0.1) TCGA-2Y-A9H0-01 13 111365267 111365267 T A ING1 5'Flank 0.45 TCGA-2Y-A9H0-01 13 37679130 37679130 T C CSNK1A1L Silent p.L88L 0.40 TCGA-2Y-A9H0-01 13 72440446 72440446 G A DACH1 Silent p.S154S 0.15 TCGA-2Y-A9H0-01 14 52741467 52741467 G T PTGDR Missense_Mutation p.A289S 0.37 tolerated(0.34) possibly_damaging(0.908) TCGA-2Y-A9H0-01 14 59730340 59730340 C T DAAM1 Missense_Mutation p.P49S 0.44 tolerated(0.63) unknown(0) TCGA-2Y-A9H0-01 14 63473124 63473124 G A KCNH5 Silent p.Y88Y 0.29 TCGA-2Y-A9H0-01 14 86093811 86093812 - T FLRT2 3'UTR 0.30 TCGA-2Y-A9H0-01 15 41796631 41796631 C G LTK Splice_Site p.X752_splice 0.36 TCGA-2Y-A9H0-01 15 48429129 48429129 A C SLC24A5 Silent p.I280I 0.33 TCGA-2Y-A9H0-01 15 48779389 48779389 C A FBN1 Nonsense_Mutation p.E1158* 0.39 TCGA-2Y-A9H0-01 15 65759147 65759147 C G DPP8 Missense_Mutation p.C581S 0.41 tolerated(0.34) possibly_damaging(0.815) TCGA-2Y-A9H0-01 15 73617688 73617688 A T HCN4 Missense_Mutation p.M563K 0.36 deleterious(0) unknown(0) TCGA-2Y-A9H0-01 16 28506821 28506821 C A APOBR Missense_Mutation p.S153R 0.40 deleterious(0.03) benign(0.42) TCGA-2Y-A9H0-01 17 10443978 10443978 G C MYH2 Missense_Mutation p.P314R 0.81 tolerated(0.4) benign(0.069) TCGA-2Y-A9H0-01 17 25630467 25630467 A T WSB1 Missense_Mutation p.Q95L 0.62 tolerated(0.3) benign(0.069) TCGA-2Y-A9H0-01 17 26822770 26822770 C T SLC13A2 Missense_Mutation p.T518I 0.27 tolerated(0.72) benign(0.072) TCGA-2Y-A9H0-01 17 34245209 34245209 G A RDM1 3'UTR 0.15 TCGA-2Y-A9H0-01 17 61949439 61949439 A T CSH2 3'UTR 0.24 TCGA-2Y-A9H0-01 17 67023238 67023238 T A ABCA9 Missense_Mutation p.E643D 0.13 deleterious(0.01) probably_damaging(0.975) TCGA-2Y-A9H0-01 18 11851773 11851773 T C CHMP1B Missense_Mutation p.V88A 0.55 deleterious(0) probably_damaging(0.983) TCGA-2Y-A9H0-01 18 63547857 63547857 A T CDH7 Silent p.R695R 0.40 TCGA-2Y-A9H0-01 18 7955137 7955137 C T PTPRM Missense_Mutation p.A286V 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-2Y-A9H0-01 18 9399524 9399524 A T TWSG1 Nonstop_Mutation p.*224Lext*10 0.33 TCGA-2Y-A9H0-01 19 1429964 1429964 A C DAZAP1 Splice_Site p.X234_splice 0.32 TCGA-2Y-A9H0-01 19 14730167 14730167 T A EMR3 3'UTR 0.52 TCGA-2Y-A9H0-01 19 1952861 1952861 A T CSNK1G2 Intron 0.40 TCGA-2Y-A9H0-01 19 21606246 21606246 A G ZNF493 Missense_Mutation p.Q262R 0.38 deleterious(0) benign(0.062) TCGA-2Y-A9H0-01 19 38958307 38958307 C A RYR1 Missense_Mutation p.S1079Y 0.43 probably_damaging(0.963) TCGA-2Y-A9H0-01 19 54634878 54634878 C A PRPF31 3'UTR 0.45 TCGA-2Y-A9H0-01 1 155719608 155719608 G T GON4L 3'UTR 0.32 TCGA-2Y-A9H0-01 1 15655783 15655783 C A FHAD1 Intron 0.37 TCGA-2Y-A9H0-01 1 156764567 156764567 G T PRCC Missense_Mutation p.L430F 0.27 deleterious(0.05) possibly_damaging(0.764) TCGA-2Y-A9H0-01 1 186957738 186957738 C A PLA2G4A 3'UTR 0.33 TCGA-2Y-A9H0-01 1 198700795 198700795 G T PTPRC Missense_Mutation p.L638F 0.63 deleterious(0) probably_damaging(1) TCGA-2Y-A9H0-01 1 205027137 205027137 G - CNTN2 Frame_Shift_Del p.E54Rfs*22 0.37 TCGA-2Y-A9H0-01 1 222922851 222922851 A C FAM177B Missense_Mutation p.T96P 0.53 tolerated(0.06) possibly_damaging(0.549) TCGA-2Y-A9H0-01 1 32162681 32162682 - G COL16A1 Frame_Shift_Ins p.E250Rfs*13 0.28 TCGA-2Y-A9H0-01 1 35653652 35653652 C T SFPQ Missense_Mutation p.M579I 0.46 tolerated(0.17) benign(0.107) TCGA-2Y-A9H0-01 1 36074978 36074978 C T PSMB2 Missense_Mutation p.G106D 0.06 deleterious(0) probably_damaging(0.995) TCGA-2Y-A9H0-01 1 7725058 7725058 A G CAMTA1 Silent p.A817A 0.39 TCGA-2Y-A9H0-01 20 33328358 33328358 G C NCOA6 Missense_Mutation p.A1901G 0.37 benign(0.031) TCGA-2Y-A9H0-01 22 24967931 24967931 C A SNRPD3 Missense_Mutation p.Q123K 0.42 tolerated_low_confidence(0.07) benign(0) TCGA-2Y-A9H0-01 22 31673196 31673196 A G LIMK2 3'UTR 0.69 TCGA-2Y-A9H0-01 22 50987118 50987118 A T KLHDC7B Nonsense_Mutation p.K175* 0.82 TCGA-2Y-A9H0-01 2 108443390 108443390 G A RGPD4 5'Flank 0.09 TCGA-2Y-A9H0-01 2 113830247 113830247 C G IL1F10 5'UTR 0.42 TCGA-2Y-A9H0-01 2 113830283 113830283 A T IL1F10 5'UTR 0.35 TCGA-2Y-A9H0-01 2 160605311 160605311 G A MARCH7 Missense_Mutation p.V504I 0.41 deleterious(0.01) probably_damaging(0.989) TCGA-2Y-A9H0-01 2 160862301 160862301 T G PLA2R1 Missense_Mutation p.S566R 0.50 tolerated(0.2) benign(0.06) TCGA-2Y-A9H0-01 2 215838711 215838711 T A ABCA12 Missense_Mutation p.T1842S 0.45 tolerated(0.7) benign(0.021) TCGA-2Y-A9H0-01 2 219501434 219501434 T A PLCD4 3'UTR 0.30 TCGA-2Y-A9H0-01 2 233346546 233346546 C T ECEL1 Missense_Mutation p.G604R 0.36 deleterious(0) possibly_damaging(0.828) TCGA-2Y-A9H0-01 2 242662639 242662639 G A ING5 Nonsense_Mutation p.W211* 0.40 TCGA-2Y-A9H0-01 2 46587814 46587814 A T EPAS1 Silent p.T164T 0.41 TCGA-2Y-A9H0-01 2 74438882 74438882 A C MTHFD2 Missense_Mutation p.I260L 0.47 tolerated(0.25) probably_damaging(0.999) TCGA-2Y-A9H0-01 2 96459885 96459885 G A AC008268.2 RNA 0.23 TCGA-2Y-A9H0-01 2 96696190 96696190 C T GPAT2 Missense_Mutation p.G150D 0.20 tolerated(0.23) unknown(0) TCGA-2Y-A9H0-01 2 97302698 97302698 T C KANSL3 Missense_Mutation p.M59V 0.40 tolerated(0.24) benign(0.178) TCGA-2Y-A9H0-01 3 109049584 109049584 T G DPPA4 Missense_Mutation p.T156P 0.45 tolerated(0.28) benign(0.128) TCGA-2Y-A9H0-01 3 184062581 184062581 G T FAM131A Silent p.S308S 0.47 TCGA-2Y-A9H0-01 3 186370435 186370435 C A FETUB 3'UTR 0.50 TCGA-2Y-A9H0-01 3 197765494 197765494 C G LMLN Missense_Mutation p.L679V 0.45 tolerated_low_confidence(0.11) unknown(0) TCGA-2Y-A9H0-01 3 49057667 49057667 C G DALRD3 5'Flank 0.34 TCGA-2Y-A9H0-01 3 62358217 62358217 G A FEZF2 Silent p.G109G 0.06 TCGA-2Y-A9H0-01 4 38933200 38933201 - A FAM114A1 Frame_Shift_Ins p.E433Gfs*6 0.27 TCGA-2Y-A9H0-01 4 8220023 8220023 C G SH3TC1 Missense_Mutation p.P289A 0.34 tolerated(0.09) benign(0.133) TCGA-2Y-A9H0-01 5 139494428 139494428 G A PURA Missense_Mutation p.G221D 0.43 deleterious(0) probably_damaging(1) TCGA-2Y-A9H0-01 5 180166888 180166888 T C OR2Y1 Silent p.T57T 0.34 TCGA-2Y-A9H0-01 5 180582886 180582886 A G OR2V2 Missense_Mutation p.H315R 0.32 tolerated_low_confidence(0.28) benign(0.004) TCGA-2Y-A9H0-01 5 36197768 36197768 T C NADK2 Splice_Site p.X356_splice 0.31 TCGA-2Y-A9H0-01 6 136922157 136922157 C T MAP3K5 Intron 0.66 TCGA-2Y-A9H0-01 6 64499079 64499079 T C EYS Missense_Mutation p.N2484D 0.41 tolerated(0.15) benign(0.027) TCGA-2Y-A9H0-01 7 130020953 130020953 G C CPA1 Missense_Mutation p.R27P 0.36 deleterious(0) probably_damaging(1) TCGA-2Y-A9H0-01 7 155100100 155100100 A G INSIG1 3'UTR 0.24 TCGA-2Y-A9H0-01 7 27196172 27196172 A T HOXA7 5'UTR 0.39 TCGA-2Y-A9H0-01 7 38299639 38299639 T C TRGC1 3'UTR 0.22 TCGA-2Y-A9H0-01 7 4014141 4014141 G C SDK1 Missense_Mutation p.G653A 0.47 tolerated(0.11) benign(0.361) TCGA-2Y-A9H0-01 7 4825922 4825922 C A AP5Z1 Missense_Mutation p.L392M 0.48 deleterious(0.01) probably_damaging(0.99) TCGA-2Y-A9H0-01 7 51096609 51096609 G A COBL Silent p.T728T 0.41 TCGA-2Y-A9H0-01 7 794224 794224 A G HEATR2 Splice_Site p.X342_splice 0.39 TCGA-2Y-A9H0-01 7 80103624 80103624 C T GNAT3 Missense_Mutation p.R178Q 0.27 deleterious(0) benign(0.315) TCGA-2Y-A9H0-01 7 95665003 95665003 G A DYNC1I1 Missense_Mutation p.V452I 0.41 tolerated(0.09) probably_damaging(0.99) TCGA-2Y-A9H0-01 8 24349552 24349552 A G ADAM7 Missense_Mutation p.Y498C 0.40 deleterious(0) probably_damaging(1) TCGA-2Y-A9H0-01 8 3165891 3165891 G A CSMD1 Silent p.L1256L 0.59 TCGA-2Y-A9H0-01 8 42015551 42015558 ATTGGCTA - AP3M2 Frame_Shift_Del p.L123Rfs*6 0.31 TCGA-2Y-A9H0-01 8 4851999 4851999 G A CSMD1 5'Flank 0.44 TCGA-2Y-A9H0-01 8 76476484 76476484 T A HNF4G 3'UTR 0.50 TCGA-2Y-A9H0-01 9 134074363 134074363 A G NUP214 Missense_Mutation p.T1828A 0.41 benign(0.012) TCGA-2Y-A9H0-01 9 138774767 138774767 T C CAMSAP1 Silent p.G106G 0.45 TCGA-2Y-A9H0-01 9 139741196 139741196 C G C9orf172 Missense_Mutation p.P777R 0.22 deleterious(0) probably_damaging(1) TCGA-2Y-A9H0-01 9 35295866 35295866 G A UNC13B Missense_Mutation p.D234N 0.34 deleterious_low_confidence(0.01) benign(0.001) TCGA-2Y-A9H0-01 X 140984494 140984494 C T MAGEC3 Intron 0.89 TCGA-2Y-A9H0-01 X 1742043 1742043 C T ASMT Silent p.A27A 0.87 TCGA-2Y-A9H1-01 10 103991819 103991819 T G PITX3 Missense_Mutation p.S7R 0.28 tolerated_low_confidence(0.63) possibly_damaging(0.859) TCGA-2Y-A9H1-01 10 105048343 105048372 ATATTAGAGGAGACAGTAATATCTACTAAG - INA In_Frame_Del p.I473_K482del 0.23 TCGA-2Y-A9H1-01 10 127806605 127806605 A G ADAM12 Splice_Site p.X204_splice 0.31 TCGA-2Y-A9H1-01 11 100933279 100933279 T C PGR Missense_Mutation p.D704G 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-2Y-A9H1-01 11 123886545 123886545 C A OR10G4 Silent p.G88G 0.40 TCGA-2Y-A9H1-01 11 4928615 4928615 A G OR51A7 Missense_Mutation p.N6D 0.31 tolerated(1) benign(0.001) TCGA-2Y-A9H1-01 11 5686833 5686833 T C TRIM5 Intron 0.03 TCGA-2Y-A9H1-01 11 57509691 57509691 G T C11orf31 3'UTR 0.28 TCGA-2Y-A9H1-01 11 6238742 6238742 A T FAM160A2 Missense_Mutation p.S706T 0.34 tolerated(0.44) benign(0.002) TCGA-2Y-A9H1-01 11 93526996 93526996 T G MED17 Missense_Mutation p.I247S 0.33 deleterious(0) probably_damaging(0.912) TCGA-2Y-A9H1-01 12 101017580 101017580 C T GAS2L3 Missense_Mutation p.P333S 0.27 deleterious(0.04) probably_damaging(0.949) TCGA-2Y-A9H1-01 12 49496110 49496110 C G LMBR1L Missense_Mutation p.Q273H 0.29 tolerated(0.17) possibly_damaging(0.54) TCGA-2Y-A9H1-01 12 50749666 50749666 G C FAM186A Missense_Mutation p.Q317E 0.21 deleterious(0.05) possibly_damaging(0.451) TCGA-2Y-A9H1-01 12 82750988 82750988 C T CCDC59 Missense_Mutation p.R72Q 0.38 tolerated(0.33) benign(0.24) TCGA-2Y-A9H1-01 12 8618122 8618122 G T CLEC6A Missense_Mutation p.S89I 0.33 deleterious(0) probably_damaging(0.98) TCGA-2Y-A9H1-01 13 33222891 33222891 G A PDS5B Intron 0.33 TCGA-2Y-A9H1-01 13 42179341 42179341 T A VWA8 Missense_Mutation p.Q1650L 0.43 deleterious(0) probably_damaging(0.986) TCGA-2Y-A9H1-01 13 76381866 76381866 G A LMO7 Missense_Mutation p.D250N 0.05 tolerated(0.25) possibly_damaging(0.772) TCGA-2Y-A9H1-01 14 19566058 19566058 G A POTEG Missense_Mutation p.V368I 0.12 tolerated(1) benign(0.001) TCGA-2Y-A9H1-01 14 20502316 20502316 G A OR4K13 Missense_Mutation p.A201V 0.37 tolerated(0.15) benign(0.126) TCGA-2Y-A9H1-01 14 50192421 50192421 G A KLHDC1 Nonsense_Mutation p.W167* 0.36 TCGA-2Y-A9H1-01 14 77493179 77493179 C A IRF2BPL Silent p.S319S 0.54 TCGA-2Y-A9H1-01 14 88983540 88983540 T - PTPN21 Frame_Shift_Del p.K82Nfs*3 0.30 TCGA-2Y-A9H1-01 15 100332612 100332612 G A AC090825.1 3'Flank 0.36 TCGA-2Y-A9H1-01 15 23890281 23890281 T C MAGEL2 Missense_Mutation p.E267G 0.34 tolerated(0.12) benign(0.028) TCGA-2Y-A9H1-01 15 28419679 28419679 C T HERC2 Missense_Mutation p.E3307K 0.29 probably_damaging(0.991) TCGA-2Y-A9H1-01 15 85259403 85259403 C G SEC11A 5'UTR 0.36 TCGA-2Y-A9H1-01 15 93496619 93496619 G C CHD2 Missense_Mutation p.G512A 0.32 deleterious(0) probably_damaging(1) TCGA-2Y-A9H1-01 16 31488866 31488866 G A TGFB1I1 Missense_Mutation p.C452Y 0.33 deleterious(0) probably_damaging(1) TCGA-2Y-A9H1-01 16 419990 419990 G A MRPL28 Missense_Mutation p.R77W 0.23 deleterious(0.02) possibly_damaging(0.663) TCGA-2Y-A9H1-01 16 4794959 4794959 G T C16orf71 Silent p.R330R 0.34 TCGA-2Y-A9H1-01 16 541225 541225 C T RAB11FIP3 Intron 0.05 TCGA-2Y-A9H1-01 16 55801323 55801326 ACAA - CES1P1 RNA 0.36 TCGA-2Y-A9H1-01 16 67440191 67440191 G A ZDHHC1 Missense_Mutation p.A55V 0.41 deleterious(0.04) possibly_damaging(0.51) TCGA-2Y-A9H1-01 16 67680396 67680396 T C RLTPR Missense_Mutation p.S148P 0.26 tolerated(0.4) benign(0.001) TCGA-2Y-A9H1-01 17 10535931 10535931 C T MYH3 Silent p.V1606V 0.33 TCGA-2Y-A9H1-01 17 21454578 21454578 C A C17orf51 Silent p.S36S 0.35 TCGA-2Y-A9H1-01 17 45890960 45890960 T C OSBPL7 Missense_Mutation p.E531G 0.06 deleterious(0) probably_damaging(0.912) TCGA-2Y-A9H1-01 17 62745794 62745794 G C hsa-mir-6080 RNA 0.50 TCGA-2Y-A9H1-01 17 68175906 68175906 T C KCNJ2 3'UTR 0.17 TCGA-2Y-A9H1-01 17 71197399 71197399 A T COG1 Missense_Mutation p.E478V 0.52 deleterious(0) probably_damaging(0.994) TCGA-2Y-A9H1-01 17 7212975 7212975 C G EIF5A Missense_Mutation p.F37L 0.20 deleterious(0.01) benign(0.331) TCGA-2Y-A9H1-01 17 73625530 73625530 C A RECQL5 Missense_Mutation p.G658V 0.26 deleterious(0) probably_damaging(0.986) TCGA-2Y-A9H1-01 17 73831523 73831523 C A UNC13D Silent p.L605L 0.44 TCGA-2Y-A9H1-01 17 74737143 74737143 A T MFSD11 Missense_Mutation p.Y86F 0.21 deleterious(0.01) benign(0.309) TCGA-2Y-A9H1-01 18 21441694 21441694 G A LAMA3 Missense_Mutation p.V1503M 0.39 probably_damaging(0.977) TCGA-2Y-A9H1-01 18 3447754 3447754 A G TGIF1 5'Flank 0.38 TCGA-2Y-A9H1-01 19 14200958 14200958 G A SAMD1 Missense_Mutation p.S92L 0.35 deleterious(0) unknown(0) TCGA-2Y-A9H1-01 19 19345806 19345806 C G NCAN Missense_Mutation p.L1051V 0.30 tolerated(0.81) benign(0.001) TCGA-2Y-A9H1-01 19 287716 287716 G A PPAP2C Silent p.D101D 0.27 TCGA-2Y-A9H1-01 19 38376879 38376883 CTTCT - WDR87 Frame_Shift_Del p.R2437Sfs*6 0.28 TCGA-2Y-A9H1-01 19 39924221 39924222 AC - RPS16 Intron 0.18 TCGA-2Y-A9H1-01 19 40875888 40875888 C G PLD3 Missense_Mutation p.P168R 0.33 deleterious(0.02) possibly_damaging(0.82) TCGA-2Y-A9H1-01 19 51958750 51958750 C A SIGLEC8 Nonsense_Mutation p.E325* 0.33 TCGA-2Y-A9H1-01 19 53344837 53344837 T G ZNF468 Missense_Mutation p.H237P 0.36 deleterious(0.01) possibly_damaging(0.75) TCGA-2Y-A9H1-01 19 53645787 53645787 C T ZNF347 Missense_Mutation p.M99I 0.21 tolerated(1) benign(0.001) TCGA-2Y-A9H1-01 19 7670161 7670161 G T CAMSAP3 Silent p.A66A 0.36 TCGA-2Y-A9H1-01 19 989770 989770 C G WDR18 Silent p.T110T 0.30 TCGA-2Y-A9H1-01 1 103444972 103444972 C A COL11A1 Missense_Mutation p.G859V 0.28 unknown(0) TCGA-2Y-A9H1-01 1 11102990 11102990 G C MASP2 Silent p.T277T 0.26 TCGA-2Y-A9H1-01 1 13716876 13716876 C T PRAMEF17 Silent p.A121A 0.43 TCGA-2Y-A9H1-01 1 146633353 146633353 G C PRKAB2 Missense_Mutation p.P227A 0.29 deleterious(0.01) possibly_damaging(0.698) TCGA-2Y-A9H1-01 1 151070417 151070417 G A GABPB2 Silent p.T187T 0.24 TCGA-2Y-A9H1-01 1 152326933 152326933 C T FLG2 Missense_Mutation p.G1110D 0.22 unknown(0) TCGA-2Y-A9H1-01 1 158300831 158300831 A T CD1B Missense_Mutation p.F28Y 0.27 tolerated(0.22) benign(0.143) TCGA-2Y-A9H1-01 1 171033398 171033398 C A MROH9 Missense_Mutation p.P835T 0.50 tolerated(0.11) benign(0.037) TCGA-2Y-A9H1-01 1 171033399 171033399 C A MROH9 Missense_Mutation p.P835H 0.50 deleterious(0.02) possibly_damaging(0.891) TCGA-2Y-A9H1-01 1 17395676 17395676 G A PADI2 Missense_Mutation p.L621F 0.36 deleterious(0) probably_damaging(0.981) TCGA-2Y-A9H1-01 1 175360435 175360435 C T TNR Missense_Mutation p.S499N 0.30 tolerated(0.36) possibly_damaging(0.65) TCGA-2Y-A9H1-01 1 209907934 209907934 T G HSD11B1 3'UTR 0.35 TCGA-2Y-A9H1-01 1 3407516 3407516 G A MEGF6 Silent p.P1508P 0.37 TCGA-2Y-A9H1-01 1 35229082 35229082 T - GJB4 3'UTR 0.26 TCGA-2Y-A9H1-01 1 39878210 39878210 C T KIAA0754 Missense_Mutation p.S622L 0.39 benign(0.002) TCGA-2Y-A9H1-01 1 43830911 43830911 G A ELOVL1 Silent p.F61F 0.32 TCGA-2Y-A9H1-01 1 44170005 44170005 T G KDM4A Nonsense_Mutation p.Y1053* 0.29 TCGA-2Y-A9H1-01 1 57395082 57395082 A C C8B Missense_Mutation p.S591A 0.28 deleterious_low_confidence(0) possibly_damaging(0.467) TCGA-2Y-A9H1-01 1 70504820 70504820 G C LRRC7 Missense_Mutation p.A1067P 0.27 tolerated(1) benign(0.001) TCGA-2Y-A9H1-01 1 78280889 78280889 G T FAM73A Missense_Mutation p.D290Y 0.28 deleterious(0.01) possibly_damaging(0.882) TCGA-2Y-A9H1-01 1 78958702 78958702 T C PTGFR Missense_Mutation p.Y92H 0.38 deleterious(0) probably_damaging(0.993) TCGA-2Y-A9H1-01 20 1629706 1629706 G A SIRPG Missense_Mutation p.A141V 0.35 tolerated(0.13) benign(0.003) TCGA-2Y-A9H1-01 20 48770184 48770184 C A TMEM189 5'UTR 0.30 TCGA-2Y-A9H1-01 20 51870043 51870043 G A TSHZ2 Missense_Mutation p.A16T 0.34 tolerated(0.36) benign(0.04) TCGA-2Y-A9H1-01 20 62592718 62592718 T G ZNF512B Missense_Mutation p.K791Q 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-2Y-A9H1-01 21 37833541 37833541 C T CLDN14 Silent p.L151L 0.30 TCGA-2Y-A9H1-01 21 40981545 40981545 A G C21orf88 Silent p.P39P 0.34 TCGA-2Y-A9H1-01 21 45451995 45451995 A C TRAPPC10 Missense_Mutation p.T31P 0.27 tolerated(0.05) benign(0.323) TCGA-2Y-A9H1-01 22 23011173 23011173 G A IGLV3-27 Missense_Mutation p.R79Q 0.29 deleterious(0.04) possibly_damaging(0.533) TCGA-2Y-A9H1-01 22 23230126 23230126 G A IGLL5 5'UTR 0.34 TCGA-2Y-A9H1-01 22 23437953 23437953 G C GNAZ Missense_Mutation p.R24P 0.30 deleterious(0) probably_damaging(0.966) TCGA-2Y-A9H1-01 22 24640830 24640830 G A GGT5 5'UTR 0.29 TCGA-2Y-A9H1-01 22 26887916 26887916 T C TFIP11 3'UTR 0.27 TCGA-2Y-A9H1-01 22 29708103 29708103 G T GAS2L1 3'Flank 0.27 TCGA-2Y-A9H1-01 22 39357505 39357505 C G APOBEC3A Missense_Mutation p.I96M 0.49 tolerated(0.11) probably_damaging(0.999) TCGA-2Y-A9H1-01 22 39884249 39884249 C T MGAT3 Silent p.D299D 0.34 TCGA-2Y-A9H1-01 22 50962567 50962567 C T SCO2 Missense_Mutation p.E92K 0.33 tolerated(0.29) benign(0.065) TCGA-2Y-A9H1-01 2 120734669 120734669 T C PTPN4 3'UTR 0.33 TCGA-2Y-A9H1-01 2 136555611 136555611 A G LCT Missense_Mutation p.L1655P 0.33 deleterious(0) probably_damaging(0.964) TCGA-2Y-A9H1-01 2 153399308 153399308 A G FMNL2 Missense_Mutation p.Y86C 0.31 benign(0.333) TCGA-2Y-A9H1-01 2 158272637 158272637 G C CYTIP Missense_Mutation p.P211R 0.39 deleterious(0.02) benign(0.157) TCGA-2Y-A9H1-01 2 191854348 191854348 A G STAT1 Missense_Mutation p.F364L 0.36 tolerated(0.24) benign(0.092) TCGA-2Y-A9H1-01 2 219134201 219134201 C T AAMP Missense_Mutation p.G60S 0.34 tolerated(0.32) benign(0.017) TCGA-2Y-A9H1-01 2 220396813 220396813 C T ASIC4 Missense_Mutation p.P400L 0.38 deleterious(0) probably_damaging(0.976) TCGA-2Y-A9H1-01 2 234418763 234418763 T C USP40 Missense_Mutation p.M860V 0.28 tolerated(1) benign(0.001) TCGA-2Y-A9H1-01 2 242106589 242106589 A G PPP1R7 Intron 0.32 TCGA-2Y-A9H1-01 2 242814897 242814897 T A CXXC11 Missense_Mutation p.L397H 0.27 tolerated(0.2) possibly_damaging(0.562) TCGA-2Y-A9H1-01 2 26477337 26477337 C G HADHB Missense_Mutation p.A35G 0.36 tolerated(0.09) benign(0) TCGA-2Y-A9H1-01 2 33359882 33359882 C A LTBP1 Silent p.I352I 0.28 TCGA-2Y-A9H1-01 2 54858513 54858513 A T SPTBN1 Missense_Mutation p.E1110V 0.40 deleterious(0) probably_damaging(0.99) TCGA-2Y-A9H1-01 3 169684285 169684285 G A SEC62 5'Flank 0.17 TCGA-2Y-A9H1-01 3 182665421 182665421 C A DCUN1D1 Splice_Site p.X174_splice 0.29 TCGA-2Y-A9H1-01 3 41266136 41266136 T C CTNNB1 Missense_Mutation p.S45P 0.36 deleterious(0) probably_damaging(0.939) TCGA-2Y-A9H1-01 3 44959607 44959607 T A TGM4 3'Flank 0.21 TCGA-2Y-A9H1-01 3 45132884 45132884 T A CDCP1 Nonsense_Mutation p.K592* 0.24 TCGA-2Y-A9H1-01 3 46400203 46400203 T C CCR2 Intron 0.23 TCGA-2Y-A9H1-01 3 49006081 49006081 A G ARIH2 Missense_Mutation p.Y218C 0.38 tolerated(0.18) benign(0.007) TCGA-2Y-A9H1-01 3 58067391 58067391 G A FLNB Silent p.V225V 0.42 TCGA-2Y-A9H1-01 3 9785454 9785454 C T BRPF1 Missense_Mutation p.T835M 0.32 tolerated(0.11) benign(0.111) TCGA-2Y-A9H1-01 4 119204214 119204214 G T PRSS12 Missense_Mutation p.L698M 0.32 deleterious(0.02) possibly_damaging(0.89) TCGA-2Y-A9H1-01 4 156135952 156135952 C A NPY2R Missense_Mutation p.F287L 0.28 tolerated(0.07) possibly_damaging(0.631) TCGA-2Y-A9H1-01 4 156135953 156135953 C T NPY2R Nonsense_Mutation p.Q288* 0.28 TCGA-2Y-A9H1-01 4 184827897 184827897 C T STOX2 5'UTR 0.43 TCGA-2Y-A9H1-01 4 42457611 42457611 C A ATP8A1 Missense_Mutation p.W875C 0.32 deleterious(0) possibly_damaging(0.514) TCGA-2Y-A9H1-01 4 48834685 48834685 C T OCIAD1 Missense_Mutation p.P15L 0.30 deleterious(0.01) benign(0.155) TCGA-2Y-A9H1-01 4 62845399 62845399 G A LPHN3 Missense_Mutation p.S907N 0.36 deleterious(0.02) probably_damaging(0.992) TCGA-2Y-A9H1-01 4 68442954 68442954 G A STAP1 Missense_Mutation p.G114S 0.33 deleterious(0.04) benign(0.286) TCGA-2Y-A9H1-01 4 8589020 8589023 CGCG GCA GPR78 Frame_Shift_Del p.P341Rfs*35 0.20 TCGA-2Y-A9H1-01 5 128864307 128864307 T C ADAMTS19 Missense_Mutation p.L416S 0.49 tolerated(0.58) benign(0.01) TCGA-2Y-A9H1-01 5 133541801 133541801 C G PPP2CA Missense_Mutation p.E42Q 0.22 deleterious(0) benign(0.226) TCGA-2Y-A9H1-01 5 139189086 139189086 G A PSD2 Missense_Mutation p.G21S 0.29 tolerated_low_confidence(1) benign(0) TCGA-2Y-A9H1-01 5 140222990 140222990 A G PCDHA8 Missense_Mutation p.D695G 0.23 deleterious_low_confidence(0.01) benign(0.093) TCGA-2Y-A9H1-01 5 140262860 140262860 T C PCDHA13 Missense_Mutation p.L336P 0.51 deleterious_low_confidence(0) probably_damaging(0.92) TCGA-2Y-A9H1-01 5 140573599 140573599 C - PCDHB10 Frame_Shift_Del p.P492Rfs*50 0.15 TCGA-2Y-A9H1-01 5 147211169 147211169 T G SPINK1 5'UTR 0.41 TCGA-2Y-A9H1-01 5 150678157 150678157 C A SLC36A3 Missense_Mutation p.L72F 0.46 deleterious(0) possibly_damaging(0.861) TCGA-2Y-A9H1-01 5 157078733 157078733 G A SOX30 Silent p.G118G 0.13 TCGA-2Y-A9H1-01 5 174156654 174156654 A G MSX2 3'UTR 0.46 TCGA-2Y-A9H1-01 5 176721059 176721059 A G NSD1 Silent p.P2230P 0.32 TCGA-2Y-A9H1-01 5 53816125 53816125 A G SNX18 3'UTR 0.48 TCGA-2Y-A9H1-01 5 64084777 64084777 G A CWC27 Splice_Site p.X200_splice 0.48 TCGA-2Y-A9H1-01 5 82837017 82837017 C A VCAN Missense_Mutation p.A2732E 0.24 deleterious(0) probably_damaging(0.984) TCGA-2Y-A9H1-01 6 124979581 124979581 T C NKAIN2 Intron 0.39 TCGA-2Y-A9H1-01 6 155450964 155450964 A C TIAM2 Missense_Mutation p.T203P 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.623) TCGA-2Y-A9H1-01 6 16327286 16327286 C G ATXN1 Missense_Mutation p.G419A 0.28 tolerated(0.14) possibly_damaging(0.766) TCGA-2Y-A9H1-01 6 30520392 30520392 C T GNL1 Silent p.G317G 0.23 TCGA-2Y-A9H1-01 6 33283384 33283384 G A ZBTB22 Missense_Mutation p.S437F 0.35 tolerated(0.7) probably_damaging(0.928) TCGA-2Y-A9H1-01 6 36926970 36926970 G A PI16 Missense_Mutation p.C74Y 0.34 deleterious(0) probably_damaging(1) TCGA-2Y-A9H1-01 6 40996001 40996001 G T UNC5CL 3'UTR 0.25 TCGA-2Y-A9H1-01 6 42227293 42227293 T C TRERF1 Missense_Mutation p.S685G 0.33 deleterious(0) benign(0.153) TCGA-2Y-A9H1-01 7 122342165 122342165 T C RNF148 Missense_Mutation p.T214A 0.29 tolerated(0.5) unknown(0) TCGA-2Y-A9H1-01 7 139316421 139316421 C T HIPK2 Nonsense_Mutation p.W385* 0.31 TCGA-2Y-A9H1-01 7 150765081 150765081 C A SLC4A2 Missense_Mutation p.P363T 0.29 deleterious(0.02) probably_damaging(1) TCGA-2Y-A9H1-01 7 48411826 48411826 T C ABCA13 Missense_Mutation p.M3622T 0.27 benign(0.046) TCGA-2Y-A9H1-01 7 5965278 5965278 T G CCZ1 Missense_Mutation p.L470R 0.33 deleterious(0) probably_damaging(0.99) TCGA-2Y-A9H1-01 7 76140971 76140971 C A UPK3B Intron 0.37 TCGA-2Y-A9H1-01 7 81600088 81600088 T A CACNA2D1 Intron 0.40 TCGA-2Y-A9H1-01 8 103572893 103572893 G A ODF1 Silent p.P178P 0.11 TCGA-2Y-A9H1-01 8 110439309 110439309 C A PKHD1L1 Missense_Mutation p.T975K 0.33 tolerated(0.19) benign(0.276) TCGA-2Y-A9H1-01 8 117950586 117950586 A G AARD Missense_Mutation p.D35G 0.38 tolerated(1) benign(0) TCGA-2Y-A9H1-01 8 118183271 118183271 A G SLC30A8 Splice_Site p.X277_splice 0.34 TCGA-2Y-A9H1-01 8 21608422 21608422 T C GFRA2 Missense_Mutation p.S158G 0.62 tolerated(0.57) benign(0.009) TCGA-2Y-A9H1-01 8 24197035 24197035 G T ADAM28 Missense_Mutation p.G542W 0.54 deleterious(0) probably_damaging(1) TCGA-2Y-A9H1-01 8 2976077 2976077 G A CSMD1 Missense_Mutation p.P2092S 0.49 benign(0.236) TCGA-2Y-A9H1-01 8 33449660 33449660 C T DUSP26 Silent p.L169L 0.43 TCGA-2Y-A9H1-01 8 68968192 68968192 T C PREX2 Silent p.P407P 0.34 TCGA-2Y-A9H1-01 8 69031729 69031729 C A PREX2 Missense_Mutation p.L1162I 0.40 deleterious(0) possibly_damaging(0.874) TCGA-2Y-A9H1-01 8 99170330 99170330 A T POP1 Missense_Mutation p.Q969L 0.37 deleterious(0) possibly_damaging(0.71) TCGA-2Y-A9H1-01 8 99224705 99224705 T C NIPAL2 Missense_Mutation p.I195V 0.11 tolerated(0.33) benign(0.039) TCGA-2Y-A9H1-01 9 102782996 102782996 G T ERP44 Silent p.I163I 0.24 TCGA-2Y-A9H1-01 9 130588910 130588910 G T ENG Missense_Mutation p.N134K 0.05 deleterious(0.04) possibly_damaging(0.77) TCGA-2Y-A9H1-01 9 134073496 134073496 A T NUP214 Nonsense_Mutation p.K1539* 0.37 TCGA-2Y-A9H1-01 9 140361782 140361782 T C PNPLA7 Missense_Mutation p.K1009R 0.36 tolerated(1) benign(0.011) TCGA-2Y-A9H1-01 9 35092036 35092036 G A PIGO Silent p.H616H 0.31 TCGA-2Y-A9H1-01 9 38397141 38397141 G C ALDH1B1 Missense_Mutation p.G466R 0.31 deleterious(0) probably_damaging(1) TCGA-2Y-A9H1-01 9 43818103 43818103 T A CNTNAP3B Missense_Mutation p.H330Q 0.40 tolerated(0.1) benign(0.14) TCGA-2Y-A9H1-01 9 96018645 96018645 C A WNK2 Missense_Mutation p.P700Q 0.27 unknown(0) TCGA-2Y-A9H1-01 X 10096096 10096096 G A WWC3 Silent p.V725V 0.70 TCGA-2Y-A9H1-01 X 101913405 101913405 T G GPRASP1 3'UTR 0.50 TCGA-2Y-A9H1-01 X 135427542 135427542 C A GPR112 Missense_Mutation p.F559L 0.77 tolerated(0.15) benign(0.001) TCGA-2Y-A9H1-01 X 151123897 151123897 C T GABRE Silent p.V360V 0.28 TCGA-2Y-A9H1-01 X 155239561 155239561 C T IL9R Silent p.C351C 0.16 TCGA-2Y-A9H1-01 X 91133725 91133725 T C PCDH11X Missense_Mutation p.F829S 0.04 deleterious(0.04) benign(0.038) TCGA-2Y-A9H2-01 10 118434447 118434447 G A HSPA12A Missense_Mutation p.R625C 0.35 tolerated(0.27) benign(0.009) TCGA-2Y-A9H2-01 10 27313397 27313397 T G ANKRD26 Missense_Mutation p.E1355A 0.12 tolerated(0.26) benign(0.016) TCGA-2Y-A9H2-01 11 85977167 85977167 G A EED Missense_Mutation p.D257N 0.14 deleterious(0) probably_damaging(1) TCGA-2Y-A9H2-01 11 9983565 9983565 C T SBF2 Missense_Mutation p.R600Q 0.14 deleterious(0) probably_damaging(0.976) TCGA-2Y-A9H2-01 12 102569312 102569312 C T PARPBP Silent p.G291G 0.31 TCGA-2Y-A9H2-01 12 19467760 19467760 G T PLEKHA5 Nonsense_Mutation p.E684* 0.15 TCGA-2Y-A9H2-01 12 49075410 49075430 GTTCATAACCAAAACCTGCGG - KANSL2 Splice_Site 0.21 TCGA-2Y-A9H2-01 12 50236870 50236870 T G BCDIN3D Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0) benign(0.008) TCGA-2Y-A9H2-01 13 110835413 110835413 C G COL4A1 Missense_Mutation p.R674S 0.22 benign(0.002) TCGA-2Y-A9H2-01 13 35883674 35883674 A T NBEA Missense_Mutation p.N1950Y 0.23 deleterious(0) probably_damaging(0.994) TCGA-2Y-A9H2-01 13 50586334 50586335 - A TRIM13 Frame_Shift_Ins p.I90Nfs*23 0.17 TCGA-2Y-A9H2-01 14 102472421 102472421 A G DYNC1H1 Missense_Mutation p.D1877G 0.42 possibly_damaging(0.895) TCGA-2Y-A9H2-01 14 24707789 24707794 TTTAAG - GMPR2 Splice_Site p.X304_splice 0.29 TCGA-2Y-A9H2-01 14 55878482 55878483 - G ATG14 Frame_Shift_Ins p.R20Pfs*67 0.32 TCGA-2Y-A9H2-01 14 61550366 61550378 GGAGAACCAAACG - SLC38A6 Frame_Shift_Del p.R501Mfs*5 0.27 TCGA-2Y-A9H2-01 15 73635757 73635757 C T HCN4 Missense_Mutation p.R393H 0.45 deleterious(0) unknown(0) TCGA-2Y-A9H2-01 16 33647405 33647405 C T RP11-812E19.9 Silent p.E65E 0.12 TCGA-2Y-A9H2-01 16 67688114 67688114 G A RLTPR Silent p.E1061E 0.35 TCGA-2Y-A9H2-01 16 89703015 89703015 A G DPEP1 Missense_Mutation p.S149G 0.17 deleterious(0) probably_damaging(1) TCGA-2Y-A9H2-01 17 3194961 3194961 T A OR3A1 Missense_Mutation p.R306W 0.19 deleterious(0.02) benign(0.027) TCGA-2Y-A9H2-01 17 42429084 42429086 ATA - GRN In_Frame_Del p.N368del 0.16 TCGA-2Y-A9H2-01 17 46675276 46675276 G A HOXB6 Silent p.A79A 0.59 TCGA-2Y-A9H2-01 17 48227094 48227094 G A PPP1R9B Missense_Mutation p.S260L 0.13 tolerated(0.2) benign(0.026) TCGA-2Y-A9H2-01 17 7529593 7529593 G T SAT2 3'UTR 0.33 TCGA-2Y-A9H2-01 18 33935598 33935598 G A FHOD3 Missense_Mutation p.D88N 0.28 deleterious(0.03) benign(0.246) TCGA-2Y-A9H2-01 19 17014374 17014374 C A CPAMD8 Missense_Mutation p.M1536I 0.22 tolerated(0.27) benign(0.281) TCGA-2Y-A9H2-01 19 21299919 21299919 A G ZNF714 Missense_Mutation p.D150G 0.17 tolerated(1) benign(0.004) TCGA-2Y-A9H2-01 19 21299920 21299920 T C ZNF714 Silent p.D150D 0.17 TCGA-2Y-A9H2-01 19 21299921 21299921 G A ZNF714 Missense_Mutation p.E151K 0.17 tolerated(1) benign(0.003) TCGA-2Y-A9H2-01 19 50713649 50713649 C T MYH14 Silent p.P9P 0.20 TCGA-2Y-A9H2-01 19 51322506 51322506 C T KLK1 Missense_Mutation p.V245I 0.13 deleterious(0.03) benign(0.017) TCGA-2Y-A9H2-01 19 52132796 52132796 G A SIGLEC5 Missense_Mutation p.A172V 0.26 tolerated(0.29) benign(0.003) TCGA-2Y-A9H2-01 1 202287778 202287778 G T LGR6 Missense_Mutation p.G783W 0.07 deleterious(0) probably_damaging(0.984) TCGA-2Y-A9H2-01 1 226109910 226109910 C T RP4-559A3.7 Silent p.V104V 0.17 TCGA-2Y-A9H2-01 1 234534263 234534263 T A TARBP1 Missense_Mutation p.I1370F 0.12 deleterious(0.03) benign(0.282) TCGA-2Y-A9H2-01 1 241753311 241753311 C T KMO Intron 0.09 TCGA-2Y-A9H2-01 1 36039066 36039066 C T TFAP2E 5'UTR 0.33 TCGA-2Y-A9H2-01 1 37356579 37356579 G T GRIK3 Silent p.T78T 0.31 TCGA-2Y-A9H2-01 1 57378219 57378219 C T C8A Silent p.P508P 0.25 TCGA-2Y-A9H2-01 1 62626759 62626759 G A INADL 3'UTR 0.40 TCGA-2Y-A9H2-01 20 47887219 47887219 C A ZNFX1 Missense_Mutation p.R377L 0.37 deleterious(0) probably_damaging(0.997) TCGA-2Y-A9H2-01 22 31342353 31342353 A C MORC2 Missense_Mutation p.F72C 0.28 deleterious(0) probably_damaging(0.994) TCGA-2Y-A9H2-01 22 50727540 50727540 T C PLXNB2 Missense_Mutation p.E367G 0.32 deleterious(0) probably_damaging(0.978) TCGA-2Y-A9H2-01 2 105892080 105892080 G C TGFBRAP1 Silent p.T534T 0.15 TCGA-2Y-A9H2-01 2 112813302 112813302 A C TMEM87B Missense_Mutation p.E45A 0.12 deleterious(0) probably_damaging(0.997) TCGA-2Y-A9H2-01 2 120125394 120125394 G A DBI Intron 0.30 TCGA-2Y-A9H2-01 2 183129067 183129067 G A PDE1A Missense_Mutation p.A59V 0.18 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9H2-01 2 219374706 219374706 G A USP37 Nonsense_Mutation p.Q341* 0.40 TCGA-2Y-A9H2-01 2 241405663 241405663 C T GPC1 Missense_Mutation p.L545F 0.47 tolerated(0.32) possibly_damaging(0.522) TCGA-2Y-A9H2-01 2 61014655 61014655 C T PAPOLG Silent p.Y432Y 0.10 TCGA-2Y-A9H2-01 3 4699862 4699862 A G ITPR1 Missense_Mutation p.M336V 0.41 tolerated(0.32) benign(0.003) TCGA-2Y-A9H2-01 3 52439158 52439167 CTAGAAAGGC - BAP1 Frame_Shift_Del p.A359Tfs*68 0.31 TCGA-2Y-A9H2-01 4 166986896 166986900 GCAAA - TLL1 Frame_Shift_Del p.G690Vfs*5 0.19 TCGA-2Y-A9H2-01 4 1746478 1746478 G A TACC3 Silent p.Q790Q 0.51 TCGA-2Y-A9H2-01 4 175224920 175224920 G A CEP44 Missense_Mutation p.A102T 0.14 deleterious(0) possibly_damaging(0.897) TCGA-2Y-A9H2-01 4 38696400 38696400 G C KLF3 Missense_Mutation p.K243N 0.07 deleterious(0.02) possibly_damaging(0.671) TCGA-2Y-A9H2-01 5 120022106 120022106 G A PRR16 Missense_Mutation p.R183Q 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2Y-A9H2-01 5 132270588 132270588 C T AFF4 Missense_Mutation p.G57R 0.37 deleterious(0) probably_damaging(1) TCGA-2Y-A9H2-01 5 1798831 1798831 C G MRPL36 Missense_Mutation p.K73N 0.03 deleterious(0) probably_damaging(0.937) TCGA-2Y-A9H2-01 5 64909990 64909990 G A TRIM23 Nonsense_Mutation p.R101* 0.45 TCGA-2Y-A9H2-01 5 68400435 68400435 A G SLC30A5 Intron 0.25 TCGA-2Y-A9H2-01 5 90106981 90106981 A G GPR98 Missense_Mutation p.I5302V 0.23 benign(0) TCGA-2Y-A9H2-01 7 112407741 112407741 G T TMEM168 Silent p.S535S 0.25 TCGA-2Y-A9H2-01 7 139311420 139311425 TTCTCT - HIPK2 In_Frame_Del p.K514_R515del 0.12 TCGA-2Y-A9H2-01 7 150696315 150696315 G A NOS3 Missense_Mutation p.A332T 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-2Y-A9H2-01 7 72727356 72727356 C T TRIM50 Missense_Mutation p.R342H 0.05 tolerated(0.07) possibly_damaging(0.696) TCGA-2Y-A9H2-01 8 146278706 146278706 C T C8orf33 Nonsense_Mutation p.R143* 0.22 TCGA-2Y-A9H2-01 8 43054562 43054562 C T HGSNAT Silent p.H586H 0.16 TCGA-2Y-A9H2-01 8 81888977 81888977 T G PAG1 Missense_Mutation p.K367N 0.41 tolerated(0.37) benign(0.01) TCGA-2Y-A9H2-01 9 140870442 140870442 C T CACNA1B Missense_Mutation p.R543W 0.07 deleterious(0) possibly_damaging(0.501) TCGA-2Y-A9H2-01 X 134654853 134654853 C T DDX26B 5'UTR 0.26 TCGA-2Y-A9H2-01 X 27999538 27999538 C T DCAF8L1 5'UTR 0.35 TCGA-2Y-A9H2-01 X 3228056 3228056 C T MXRA5 Missense_Mutation p.A2730T 0.14 deleterious(0) probably_damaging(0.996) TCGA-2Y-A9H2-01 X 5821285 5821285 G T NLGN4X Missense_Mutation p.S478R 0.29 deleterious(0.02) probably_damaging(0.997) TCGA-2Y-A9H2-01 X 83359580 83359580 C T RPS6KA6 Missense_Mutation p.C514Y 0.13 tolerated(1) benign(0.003) TCGA-2Y-A9H3-01 10 118202687 118202687 G C PNLIPRP3 Splice_Site p.X108_splice 0.07 TCGA-2Y-A9H3-01 10 61029804 61029804 C G FAM13C Missense_Mutation p.V220L 0.10 tolerated(1) benign(0.007) TCGA-2Y-A9H3-01 10 61847908 61847908 G T ANK3 Silent p.L1179L 0.12 TCGA-2Y-A9H3-01 10 72517955 72517955 G T ADAMTS14 Missense_Mutation p.R1034M 0.07 deleterious(0.01) benign(0.011) TCGA-2Y-A9H3-01 11 111431016 111431016 T C LAYN Missense_Mutation p.S328P 0.19 tolerated(0.1) benign(0.078) TCGA-2Y-A9H3-01 11 11374643 11374643 C A CSNK2A3 Missense_Mutation p.R8S 0.08 tolerated(0.43) benign(0.063) TCGA-2Y-A9H3-01 11 118071326 118071326 T C AMICA1 Silent p.T258T 0.15 TCGA-2Y-A9H3-01 11 2970488 2970488 A G NAP1L4 3'UTR 0.34 TCGA-2Y-A9H3-01 11 4944890 4944890 A G OR51G1 Missense_Mutation p.V227A 0.22 deleterious(0.02) probably_damaging(0.919) TCGA-2Y-A9H3-01 11 67203774 67203784 CCCTGGCAGGG - PTPRCAP Frame_Shift_Del p.A14Gfs*43 0.13 TCGA-2Y-A9H3-01 11 6790178 6790178 C T OR2AG2 Missense_Mutation p.R4Q 0.09 tolerated(0.57) benign(0.001) TCGA-2Y-A9H3-01 11 73688931 73688931 G C UCP2 Missense_Mutation p.H113D 0.15 tolerated(0.74) benign(0.018) TCGA-2Y-A9H3-01 11 89173873 89173873 T A NOX4 Missense_Mutation p.K153I 0.14 tolerated(0.52) benign(0.11) TCGA-2Y-A9H3-01 12 101577959 101577959 T C SLC5A8 Silent p.P335P 0.08 TCGA-2Y-A9H3-01 12 104513493 104513493 C G NFYB 3'UTR 0.08 TCGA-2Y-A9H3-01 12 123187336 123187336 C T HCAR2 Silent p.K165K 0.09 TCGA-2Y-A9H3-01 12 14578068 14578068 G A ATF7IP Missense_Mutation p.V407I 0.15 tolerated_low_confidence(0.32) benign(0.198) TCGA-2Y-A9H3-01 12 2932026 2932026 C T ITFG2 Missense_Mutation p.R339C 0.05 deleterious(0.03) probably_damaging(0.983) TCGA-2Y-A9H3-01 12 32729344 32729344 G C FGD4 Missense_Mutation p.S18T 0.15 tolerated_low_confidence(0.06) benign(0.023) TCGA-2Y-A9H3-01 12 50189083 50189083 C T NCKAP5L Missense_Mutation p.G854S 0.10 tolerated(0.6) benign(0.021) TCGA-2Y-A9H3-01 12 53895919 53895919 C A TARBP2 Missense_Mutation p.H58Q 0.20 deleterious(0.02) probably_damaging(0.998) TCGA-2Y-A9H3-01 12 57610721 57610721 G T NXPH4 5'UTR 0.12 TCGA-2Y-A9H3-01 12 58131312 58131312 C T AGAP2 Missense_Mutation p.A240T 0.05 tolerated_low_confidence(0.21) benign(0) TCGA-2Y-A9H3-01 12 69145812 69145812 T C SLC35E3 Missense_Mutation p.W172R 0.11 deleterious(0) probably_damaging(0.924) TCGA-2Y-A9H3-01 12 75601611 75601611 G A KCNC2 Silent p.G51G 0.20 TCGA-2Y-A9H3-01 12 85546802 85546802 A T LRRIQ1 Missense_Mutation p.I1474F 0.06 tolerated(0.79) benign(0.001) TCGA-2Y-A9H3-01 12 99042536 99042536 A G APAF1 Missense_Mutation p.I91V 0.32 tolerated(0.51) benign(0) TCGA-2Y-A9H3-01 13 101755543 101755543 C T NALCN Missense_Mutation p.G1013S 0.11 tolerated(0.06) probably_damaging(0.98) TCGA-2Y-A9H3-01 13 107145464 107145464 C T EFNB2 Missense_Mutation p.G309D 0.14 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9H3-01 13 108883743 108883743 A G ABHD13 3'UTR 0.13 TCGA-2Y-A9H3-01 13 37011796 37011796 T C CCNA1 Missense_Mutation p.S110P 0.13 tolerated(0.31) benign(0.004) TCGA-2Y-A9H3-01 13 39261494 39261494 G C FREM2 Missense_Mutation p.G5R 0.10 tolerated_low_confidence(1) benign(0.001) TCGA-2Y-A9H3-01 13 40256306 40256306 A T COG6 Splice_Site p.X232_splice 0.06 TCGA-2Y-A9H3-01 13 42263626 42263626 G A VWA8 Missense_Mutation p.P1332L 0.07 tolerated(0.1) benign(0.013) TCGA-2Y-A9H3-01 13 50097317 50097317 G A PHF11 Missense_Mutation p.E193K 0.07 tolerated(0.54) benign(0.018) TCGA-2Y-A9H3-01 13 88331818 88331818 G A SLITRK5 3'UTR 0.18 TCGA-2Y-A9H3-01 14 106967584 106967584 C T IGHV1-46 5'UTR 0.35 TCGA-2Y-A9H3-01 14 24808688 24808688 C T RIPK3 Missense_Mutation p.D46N 0.25 tolerated(0.09) possibly_damaging(0.661) TCGA-2Y-A9H3-01 14 25103433 25103433 G C GZMB 5'UTR 0.30 TCGA-2Y-A9H3-01 14 42355944 42355944 A T LRFN5 Missense_Mutation p.K39M 0.15 deleterious(0) probably_damaging(0.993) TCGA-2Y-A9H3-01 14 45535866 45535866 G T FAM179B Missense_Mutation p.G1496C 0.09 deleterious(0) possibly_damaging(0.556) TCGA-2Y-A9H3-01 15 25213176 25213176 G C SNURF Missense_Mutation p.G70R 0.27 tolerated_low_confidence(0.08) possibly_damaging(0.905) TCGA-2Y-A9H3-01 15 30926453 30926453 G A ARHGAP11B Silent p.R126R 0.07 TCGA-2Y-A9H3-01 15 48634290 48634290 A T DUT 3'UTR 0.24 TCGA-2Y-A9H3-01 15 83686886 83686886 G C BTBD1 Missense_Mutation p.S461C 0.06 deleterious(0) possibly_damaging(0.796) TCGA-2Y-A9H3-01 15 83935660 83935660 T C BNC1 Silent p.Q121Q 0.12 TCGA-2Y-A9H3-01 15 89867412 89867412 G A POLG Nonsense_Mutation p.Q666* 0.40 TCGA-2Y-A9H3-01 15 90628312 90628313 - G IDH2 Frame_Shift_Ins p.N367Qfs*113 0.20 TCGA-2Y-A9H3-01 15 90986673 90986673 G A IQGAP1 Silent p.T292T 0.22 TCGA-2Y-A9H3-01 15 99434825 99434825 G A IGF1R Missense_Mutation p.M304I 0.26 tolerated(1) benign(0.018) TCGA-2Y-A9H3-01 16 21139036 21139036 G A DNAH3 Silent p.L394L 0.21 TCGA-2Y-A9H3-01 16 2161188 2161188 T G PKD1 Missense_Mutation p.D1327A 0.13 possibly_damaging(0.61) TCGA-2Y-A9H3-01 16 23706194 23706194 C G ERN2 Missense_Mutation p.G700A 0.11 deleterious(0) possibly_damaging(0.549) TCGA-2Y-A9H3-01 16 53348901 53348901 A G CHD9 Missense_Mutation p.E2494G 0.04 unknown(0) TCGA-2Y-A9H3-01 16 744414 744414 A C FBXL16 Missense_Mutation p.L434R 0.13 tolerated(0.2) possibly_damaging(0.496) TCGA-2Y-A9H3-01 17 32483576 32483576 T G ASIC2 5'UTR 0.10 TCGA-2Y-A9H3-01 17 36491002 36491002 G T GPR179 Missense_Mutation p.A520E 0.15 deleterious(0.03) benign(0.219) TCGA-2Y-A9H3-01 17 36831102 36831102 C T C17orf96 5'UTR 0.17 TCGA-2Y-A9H3-01 17 3800978 3800978 G A P2RX1 3'UTR 0.23 TCGA-2Y-A9H3-01 17 59763365 59763365 A C BRIP1 Missense_Mutation p.S913A 0.18 tolerated(0.75) benign(0.019) TCGA-2Y-A9H3-01 17 60464701 60464701 G A EFCAB3 Silent p.R77R 0.06 TCGA-2Y-A9H3-01 17 62891138 62891138 A G LRRC37A3 Silent p.T746T 0.10 TCGA-2Y-A9H3-01 17 6663763 6663763 C T XAF1 Silent p.F88F 0.12 TCGA-2Y-A9H3-01 17 8168227 8168227 G T PFAS Silent p.V688V 0.10 TCGA-2Y-A9H3-01 18 31323005 31323005 C G ASXL3 Missense_Mutation p.R1065G 0.14 probably_damaging(0.998) TCGA-2Y-A9H3-01 18 43248313 43248313 G C SLC14A2 Splice_Site p.X636_splice 0.23 TCGA-2Y-A9H3-01 18 56148994 56148994 C T ALPK2 3'UTR 0.11 TCGA-2Y-A9H3-01 18 61460472 61460472 G C SERPINB7 Silent p.V99V 0.13 TCGA-2Y-A9H3-01 18 6949123 6949123 A G LAMA1 Missense_Mutation p.Y2845H 0.13 tolerated(0.06) benign(0.147) TCGA-2Y-A9H3-01 19 10403481 10403481 C T ICAM5 Silent p.A385A 0.15 TCGA-2Y-A9H3-01 19 10404779 10404779 G C ICAM5 Missense_Mutation p.R592P 0.18 tolerated(0.19) benign(0.212) TCGA-2Y-A9H3-01 19 10597429 10597429 T C KEAP1 Missense_Mutation p.S592G 0.16 tolerated(0.28) benign(0.073) TCGA-2Y-A9H3-01 19 1434870 1434870 C T DAZAP1 Nonsense_Mutation p.Q395* 0.18 TCGA-2Y-A9H3-01 19 16757902 16757902 C T SMIM7 3'UTR 0.44 TCGA-2Y-A9H3-01 19 17086047 17086047 A C CPAMD8 Missense_Mutation p.Y691D 0.12 deleterious(0.01) probably_damaging(0.983) TCGA-2Y-A9H3-01 19 33703796 33703796 G T SLC7A10 Missense_Mutation p.P157T 0.09 deleterious(0.01) probably_damaging(0.973) TCGA-2Y-A9H3-01 19 34916924 34916924 G A PDCD2L Missense_Mutation p.V326I 0.16 tolerated(0.55) benign(0.341) TCGA-2Y-A9H3-01 19 42793330 42793330 C G CIC Intron 0.13 TCGA-2Y-A9H3-01 19 43522945 43522945 T C PSG11 Missense_Mutation p.D229G 0.12 deleterious(0) probably_damaging(0.988) TCGA-2Y-A9H3-01 19 45721458 45721458 G A EXOC3L2 Silent p.Y220Y 0.11 TCGA-2Y-A9H3-01 19 45895303 45895303 G A PPP1R13L Silent p.L550L 0.05 TCGA-2Y-A9H3-01 19 46032653 46032653 G C OPA3 Missense_Mutation p.I68M 0.06 deleterious(0.01) possibly_damaging(0.776) TCGA-2Y-A9H3-01 19 46893576 46893576 C T PPP5C Silent p.N491N 0.27 TCGA-2Y-A9H3-01 19 46916426 46916426 C A CCDC8 5'UTR 0.26 TCGA-2Y-A9H3-01 19 46916734 46916734 G A CCDC8 5'UTR 0.09 TCGA-2Y-A9H3-01 19 48547184 48547184 G T CABP5 5'UTR 0.12 TCGA-2Y-A9H3-01 19 49920284 49920284 G C CCDC155 Missense_Mutation p.V463L 0.07 tolerated_low_confidence(0.11) benign(0.001) TCGA-2Y-A9H3-01 19 50837352 50837352 G C KCNC3 5'Flank 0.25 TCGA-2Y-A9H3-01 19 52375853 52375853 T C ZNF577 Missense_Mutation p.N464D 0.26 tolerated(0.06) possibly_damaging(0.607) TCGA-2Y-A9H3-01 19 52716305 52716305 A T PPP2R1A Missense_Mutation p.Q250L 0.49 tolerated(0.13) benign(0.014) TCGA-2Y-A9H3-01 19 52793824 52793824 A C ZNF766 Silent p.R260R 0.23 TCGA-2Y-A9H3-01 19 53217352 53217352 C A ZNF611 Missense_Mutation p.A36S 0.14 deleterious(0.01) benign(0.085) TCGA-2Y-A9H3-01 19 53740801 53740801 A G ZNF677 Silent p.H393H 0.10 TCGA-2Y-A9H3-01 19 54974120 54974120 C A LENG9 Missense_Mutation p.C219F 0.09 tolerated(0.7) benign(0.003) TCGA-2Y-A9H3-01 19 56011328 56011328 C A SSC5D Silent p.T617T 0.10 TCGA-2Y-A9H3-01 19 58806125 58806125 A G ZNF8 Silent p.E317E 0.07 TCGA-2Y-A9H3-01 1 103363733 103363733 C A COL11A1 Missense_Mutation p.G1417V 0.13 unknown(0) TCGA-2Y-A9H3-01 1 103444973 103444973 C A COL11A1 Missense_Mutation p.G859W 0.09 unknown(0) TCGA-2Y-A9H3-01 1 104161610 104161610 A T AMY2A Silent p.G131G 0.24 TCGA-2Y-A9H3-01 1 1114832 1114832 T C TTLL10 Intron 0.27 TCGA-2Y-A9H3-01 1 114483828 114483828 T G HIPK1 Missense_Mutation p.L275V 0.15 deleterious(0) probably_damaging(1) TCGA-2Y-A9H3-01 1 11561132 11561132 T A PTCHD2 Missense_Mutation p.F28Y 0.14 tolerated_low_confidence(1) benign(0.001) TCGA-2Y-A9H3-01 1 11861429 11861429 G C MTHFR Silent p.P88P 0.32 TCGA-2Y-A9H3-01 1 13036628 13036628 A T PRAMEF22 Missense_Mutation p.R234W 0.05 deleterious(0.02) possibly_damaging(0.708) TCGA-2Y-A9H3-01 1 145748506 145748506 G A PDZK1 Missense_Mutation p.V127M 0.34 tolerated(0.07) benign(0.396) TCGA-2Y-A9H3-01 1 152282251 152282251 G T FLG Missense_Mutation p.S1704Y 0.15 possibly_damaging(0.86) TCGA-2Y-A9H3-01 1 156899496 156899496 A C LRRC71 Missense_Mutation p.E405D 0.14 tolerated(0.1) benign(0.032) TCGA-2Y-A9H3-01 1 158301303 158301303 C G CD1B 5'UTR 0.05 TCGA-2Y-A9H3-01 1 16464921 16464921 G T EPHA2 Nonsense_Mutation p.C276* 0.16 TCGA-2Y-A9H3-01 1 16809892 16809892 T A CROCCP3 RNA 0.14 TCGA-2Y-A9H3-01 1 16892274 16892279 ACTGCC TTCTCA NBPF1 Missense_Mutation p.EAV971DEK 0.17 TCGA-2Y-A9H3-01 1 176992547 176992547 G A ASTN1 Silent p.P477P 0.08 TCGA-2Y-A9H3-01 1 178871314 178871314 C A RALGPS2 Missense_Mutation p.P533H 0.09 deleterious(0.03) possibly_damaging(0.709) TCGA-2Y-A9H3-01 1 179077338 179077338 C T ABL2 Missense_Mutation p.G1022R 0.18 tolerated_low_confidence(0.27) possibly_damaging(0.601) TCGA-2Y-A9H3-01 1 179989802 179989802 G A CEP350 Missense_Mutation p.A965T 0.30 benign(0.003) TCGA-2Y-A9H3-01 1 1846688 1846688 G C CALML6 5'UTR 0.17 TCGA-2Y-A9H3-01 1 224482050 224482050 G A NVL Missense_Mutation p.S415L 0.08 deleterious(0) possibly_damaging(0.871) TCGA-2Y-A9H3-01 1 231885681 231885681 T C DISC1 Missense_Mutation p.L376S 0.10 deleterious(0) probably_damaging(0.979) TCGA-2Y-A9H3-01 1 235345805 235345805 T C ARID4B Missense_Mutation p.D810G 0.07 tolerated_low_confidence(0.34) benign(0.248) TCGA-2Y-A9H3-01 1 236757400 236757400 C T HEATR1 Missense_Mutation p.G369R 0.11 tolerated(0.47) benign(0.022) TCGA-2Y-A9H3-01 1 236911058 236911058 A G ACTN2 Missense_Mutation p.R500G 0.10 deleterious(0) probably_damaging(1) TCGA-2Y-A9H3-01 1 2441560 2441560 C T PANK4 Missense_Mutation p.D659N 0.19 deleterious(0) probably_damaging(1) TCGA-2Y-A9H3-01 1 247016531 247016531 C T AHCTF1 Silent p.E1484E 0.11 TCGA-2Y-A9H3-01 1 247320522 247320522 G C ZNF124 Intron 0.19 TCGA-2Y-A9H3-01 1 248550917 248550917 A G OR2T6 Missense_Mutation p.E3G 0.06 tolerated(0.36) benign(0.001) TCGA-2Y-A9H3-01 1 24859597 24859597 G T RCAN3 Missense_Mutation p.D132Y 0.09 deleterious(0) possibly_damaging(0.649) TCGA-2Y-A9H3-01 1 249143084 249143084 C T ZNF672 3'UTR 0.09 TCGA-2Y-A9H3-01 1 32635482 32635482 G A KPNA6 Splice_Site p.X415_splice 0.18 TCGA-2Y-A9H3-01 1 3786308 3786308 T C DFFB Missense_Mutation p.L217P 0.16 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9H3-01 1 45272211 45272211 C G TCTEX1D4 Missense_Mutation p.G44R 0.15 tolerated(0.13) possibly_damaging(0.893) TCGA-2Y-A9H3-01 1 52871471 52871471 A T PRPF38A Nonsense_Mutation p.K84* 0.07 TCGA-2Y-A9H3-01 1 6488312 6488312 C T ESPN Silent p.V107V 0.23 TCGA-2Y-A9H3-01 1 65830467 65830467 A T DNAJC6 Missense_Mutation p.S115C 0.16 deleterious(0) possibly_damaging(0.891) TCGA-2Y-A9H3-01 1 67896027 67896027 C A SERBP1 5'UTR 0.07 TCGA-2Y-A9H3-01 1 68910485 68910485 T C RPE65 Silent p.P109P 0.19 TCGA-2Y-A9H3-01 1 79102796 79102796 T C IFI44L Missense_Mutation p.V319A 0.26 tolerated(0.11) probably_damaging(0.999) TCGA-2Y-A9H3-01 1 86959168 86959168 G T CLCA1 Missense_Mutation p.W522C 0.11 deleterious(0) probably_damaging(0.988) TCGA-2Y-A9H3-01 20 2816070 2816070 G A PCED1A 3'UTR 0.15 TCGA-2Y-A9H3-01 20 57769710 57769710 T C ZNF831 Silent p.P1212P 0.21 TCGA-2Y-A9H3-01 20 9496915 9496915 A C LAMP5 Missense_Mutation p.M128L 0.25 tolerated(0.25) benign(0) TCGA-2Y-A9H3-01 22 19371188 19371188 C G HIRA Missense_Mutation p.G457A 0.06 deleterious(0) probably_damaging(1) TCGA-2Y-A9H3-01 22 21098986 21098986 G A PI4KA Missense_Mutation p.P1129L 0.18 deleterious(0) possibly_damaging(0.754) TCGA-2Y-A9H3-01 22 21343966 21344002 GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA - LZTR1 Splice_Site p.X217_splice 0.38 TCGA-2Y-A9H3-01 22 21796948 21796948 T C HIC2 5'UTR 0.08 TCGA-2Y-A9H3-01 22 24583419 24583419 G C SUSD2 Splice_Site p.X631_splice 0.15 TCGA-2Y-A9H3-01 22 38121679 38121679 C G TRIOBP Missense_Mutation p.P1039R 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2Y-A9H3-01 22 38890726 38890726 T A DDX17 Missense_Mutation p.T375S 0.09 deleterious(0) benign(0.022) TCGA-2Y-A9H3-01 22 50654258 50654258 G A SELO Silent p.E488E 0.18 TCGA-2Y-A9H3-01 2 111850452 111850452 T C ACOXL Missense_Mutation p.L484S 0.08 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9H3-01 2 131883409 131883409 C T PLEKHB2 Nonsense_Mutation p.Q41* 0.11 TCGA-2Y-A9H3-01 2 132240468 132240468 T C TUBA3D 3'UTR 0.13 TCGA-2Y-A9H3-01 2 167266356 167266357 GG TTA SCN7A Frame_Shift_Ins p.A1267Vfs*7 0.13 TCGA-2Y-A9H3-01 2 179417552 179417552 C T TTN Silent p.V30025V 0.07 TCGA-2Y-A9H3-01 2 179529645 179529645 C T TTN Missense_Mutation p.A12018T 0.08 TCGA-2Y-A9H3-01 2 179531559 179531559 G A TTN Missense_Mutation p.S11956L 0.16 TCGA-2Y-A9H3-01 2 180307969 180307969 T C ZNF385B 3'UTR 0.09 TCGA-2Y-A9H3-01 2 197777730 197777730 C G PGAP1 Missense_Mutation p.M175I 0.20 deleterious(0.01) probably_damaging(0.909) TCGA-2Y-A9H3-01 2 211442191 211442191 G A CPS1 Nonsense_Mutation p.W149* 0.08 TCGA-2Y-A9H3-01 2 211527868 211527868 C T CPS1 Missense_Mutation p.R1323W 0.17 deleterious(0) possibly_damaging(0.896) TCGA-2Y-A9H3-01 2 212522515 212522515 G T ERBB4 Missense_Mutation p.P637Q 0.11 tolerated(0.63) benign(0.057) TCGA-2Y-A9H3-01 2 222428899 222428899 G T EPHA4 Nonsense_Mutation p.Y125* 0.16 TCGA-2Y-A9H3-01 2 223066833 223066833 C G PAX3 Missense_Mutation p.G417A 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.647) TCGA-2Y-A9H3-01 2 242149036 242149036 G T ANO7 Missense_Mutation p.V503L 0.05 tolerated(0.17) benign(0.019) TCGA-2Y-A9H3-01 2 25045489 25045489 T A ADCY3 Missense_Mutation p.N965I 0.09 tolerated(0.12) benign(0.149) TCGA-2Y-A9H3-01 2 27664729 27664729 G A NRBP1 3'UTR 0.17 TCGA-2Y-A9H3-01 2 28785968 28785968 T G PLB1 Splice_Site p.X402_splice 0.13 TCGA-2Y-A9H3-01 2 42671524 42671524 G C KCNG3 Silent p.T287T 0.14 TCGA-2Y-A9H3-01 2 46988020 46988020 G C SOCS5 3'UTR 0.18 TCGA-2Y-A9H3-01 2 61726983 61726983 T A XPO1 Missense_Mutation p.D152V 0.17 deleterious(0) probably_damaging(0.987) TCGA-2Y-A9H3-01 2 74273774 74273774 G T TET3 Nonsense_Mutation p.E109* 0.04 TCGA-2Y-A9H3-01 2 84822866 84822866 A C DNAH6 Missense_Mutation p.S941R 0.15 tolerated(0.16) benign(0.016) TCGA-2Y-A9H3-01 3 107520030 107520030 C T BBX Silent p.V880V 0.07 TCGA-2Y-A9H3-01 3 107881360 107881360 G A IFT57 Silent p.A418A 0.19 TCGA-2Y-A9H3-01 3 129251433 129251433 C A RHO Missense_Mutation p.R252S 0.17 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9H3-01 3 137783479 137783479 C T DZIP1L Silent p.R711R 0.37 TCGA-2Y-A9H3-01 3 1444079 1444079 A G CNTN6 Silent p.P965P 0.12 TCGA-2Y-A9H3-01 3 164748642 164748642 G T SI Missense_Mutation p.A917E 0.11 tolerated(0.25) benign(0.001) TCGA-2Y-A9H3-01 3 33431639 33431639 T A UBP1 3'UTR 0.14 TCGA-2Y-A9H3-01 3 52436677 52436708 CTCTGGTCATCAATCTGTAGGAGAGAAGAAGA - BAP1 Splice_Site p.X662_splice 0.30 TCGA-2Y-A9H3-01 3 58519815 58519815 C A ACOX2 Missense_Mutation p.R127S 0.20 tolerated(0.82) benign(0.003) TCGA-2Y-A9H3-01 4 13603610 13603610 G T BOD1L1 Silent p.I1638I 0.06 TCGA-2Y-A9H3-01 4 141590109 141590109 G A TBC1D9 Missense_Mutation p.P517L 0.14 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9H3-01 4 151656474 151656474 T A LRBA Missense_Mutation p.N1897I 0.13 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9H3-01 4 158257008 158257008 G A GRIA2 Missense_Mutation p.M484I 0.18 tolerated(0.07) probably_damaging(0.995) TCGA-2Y-A9H3-01 4 175897786 175897786 T C ADAM29 Silent p.S370S 0.22 TCGA-2Y-A9H3-01 4 177608548 177608548 T C VEGFC Missense_Mutation p.N313S 0.08 tolerated(0.26) benign(0.006) TCGA-2Y-A9H3-01 4 1955216 1955216 A G WHSC1 Missense_Mutation p.H768R 0.06 tolerated(0.35) possibly_damaging(0.477) TCGA-2Y-A9H3-01 4 25160666 25160666 T A SEPSECS Missense_Mutation p.I60F 0.10 tolerated(0.23) benign(0.011) TCGA-2Y-A9H3-01 4 3240566 3240566 A G HTT Missense_Mutation p.T3026A 0.08 benign(0.005) TCGA-2Y-A9H3-01 4 4199209 4199209 G A OTOP1 Missense_Mutation p.P451L 0.13 tolerated(0.08) probably_damaging(0.97) TCGA-2Y-A9H3-01 4 47901542 47901542 T C NFXL1 Missense_Mutation p.K224R 0.06 tolerated(0.16) benign(0.002) TCGA-2Y-A9H3-01 4 48542578 48542578 C T FRYL Silent p.L2029L 0.03 TCGA-2Y-A9H3-01 4 55974019 55974019 C A KDR Missense_Mutation p.D433Y 0.13 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9H3-01 4 57272854 57272854 A G PPAT Missense_Mutation p.V70A 0.10 deleterious(0.05) possibly_damaging(0.549) TCGA-2Y-A9H3-01 4 86898763 86898763 A G ARHGAP24 Missense_Mutation p.M283V 0.18 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9H3-01 4 89744163 89744163 T C FAM13A Intron 0.06 TCGA-2Y-A9H3-01 5 127645693 127645693 C A FBN2 Nonsense_Mutation p.G1728* 0.28 TCGA-2Y-A9H3-01 5 127681186 127681186 C A FBN2 Missense_Mutation p.C1027F 0.09 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9H3-01 5 131953889 131953889 C T RAD50 Missense_Mutation p.R1098W 0.12 deleterious(0.04) benign(0.003) TCGA-2Y-A9H3-01 5 133902158 133902158 A T JADE2 Missense_Mutation p.Q441L 0.30 deleterious(0) benign(0.108) TCGA-2Y-A9H3-01 5 137610243 137610243 C A GFRA3 5'UTR 0.14 TCGA-2Y-A9H3-01 5 140078195 140078195 T C HARS2 3'UTR 0.12 TCGA-2Y-A9H3-01 5 140203048 140203048 C T PCDHA5 Missense_Mutation p.A563V 0.28 tolerated_low_confidence(0.29) benign(0.007) TCGA-2Y-A9H3-01 5 140501987 140501987 A T PCDHB4 Missense_Mutation p.E136V 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.857) TCGA-2Y-A9H3-01 5 150275988 150275988 A G ZNF300 Silent p.C287C 0.25 TCGA-2Y-A9H3-01 5 151771949 151771949 A T NMUR2 Missense_Mutation p.S351T 0.10 tolerated(0.19) benign(0.004) TCGA-2Y-A9H3-01 5 176722371 176722371 G A NSD1 Missense_Mutation p.G2668R 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-2Y-A9H3-01 5 176734612 176734612 G A MXD3 Missense_Mutation p.H200Y 0.10 tolerated(0.66) benign(0.002) TCGA-2Y-A9H3-01 5 178554970 178554970 G - ADAMTS2 Frame_Shift_Del p.C870Vfs*120 0.21 TCGA-2Y-A9H3-01 5 179980384 179980384 A G CNOT6 Splice_Site p.X100_splice 0.10 TCGA-2Y-A9H3-01 5 180048891 180048891 G A FLT4 Silent p.G557G 0.14 TCGA-2Y-A9H3-01 5 180475133 180475133 T A BTNL9 Missense_Mutation p.L106M 0.20 deleterious(0.02) probably_damaging(0.988) TCGA-2Y-A9H3-01 5 2752404 2752404 T C C5orf38 Missense_Mutation p.F9S 0.19 deleterious_low_confidence(0.01) unknown(0) TCGA-2Y-A9H3-01 5 38431349 38431349 T C EGFLAM Silent p.L709L 0.08 TCGA-2Y-A9H3-01 5 59189504 59189504 G C PDE4D 5'UTR 0.13 TCGA-2Y-A9H3-01 5 90449149 90449149 C T GPR98 Nonsense_Mutation p.Q6246* 0.10 TCGA-2Y-A9H3-01 5 94749835 94749835 C T FAM81B Silent p.L160L 0.05 TCGA-2Y-A9H3-01 6 100057084 100057084 G A PRDM13 Missense_Mutation p.D100N 0.16 deleterious(0.05) benign(0.394) TCGA-2Y-A9H3-01 6 116747751 116747751 C T DSE Missense_Mutation p.A144V 0.07 deleterious(0.05) probably_damaging(0.997) TCGA-2Y-A9H3-01 6 149903658 149903658 T G GINM1 Missense_Mutation p.L267W 0.22 deleterious(0) probably_damaging(0.937) TCGA-2Y-A9H3-01 6 168434666 168434666 A T KIF25 Missense_Mutation p.Q91L 0.11 tolerated(0.11) benign(0.407) TCGA-2Y-A9H3-01 6 27216906 27216906 G T PRSS16 Missense_Mutation p.W122L 0.08 tolerated(0.25) benign(0) TCGA-2Y-A9H3-01 6 30153577 30153577 G A TRIM26 3'UTR 0.18 TCGA-2Y-A9H3-01 6 32605204 32605204 A C HLA-DQA1 5'UTR 0.37 TCGA-2Y-A9H3-01 6 36710255 36710255 G A CPNE5 Silent p.P524P 0.20 TCGA-2Y-A9H3-01 6 38840728 38840728 G T DNAH8 Missense_Mutation p.W2211C 0.21 probably_damaging(1) TCGA-2Y-A9H3-01 6 65301778 65301778 T A EYS Missense_Mutation p.I1328F 0.11 tolerated(0.12) probably_damaging(0.934) TCGA-2Y-A9H3-01 6 75904566 75904566 T A COL12A1 Silent p.I57I 0.17 TCGA-2Y-A9H3-01 6 84140738 84140738 G C ME1 5'UTR 0.13 TCGA-2Y-A9H3-01 6 84269864 84269864 T C SNAP91 Missense_Mutation p.M864V 0.13 tolerated(0.05) possibly_damaging(0.448) TCGA-2Y-A9H3-01 7 100701304 100701304 G C MUC17 Missense_Mutation p.Q4487H 0.07 unknown(0) TCGA-2Y-A9H3-01 7 102389489 102389489 A T FAM185A 5'Flank 0.11 TCGA-2Y-A9H3-01 7 115581160 115581160 A C TFEC Intron 0.05 TCGA-2Y-A9H3-01 7 128850865 128850865 A G SMO Missense_Mutation p.K571R 0.05 tolerated(0.15) benign(0.17) TCGA-2Y-A9H3-01 7 150721195 150721195 T C ATG9B Missense_Mutation p.T106A 0.07 tolerated_low_confidence(0.09) benign(0.004) TCGA-2Y-A9H3-01 7 152457013 152457013 T A ACTR3B Splice_Site p.X15_splice 0.29 TCGA-2Y-A9H3-01 7 16460814 16460814 T G ISPD Missense_Mutation p.Q45P 0.12 tolerated(0.33) benign(0) TCGA-2Y-A9H3-01 7 26224237 26224237 C T NFE2L3 Nonsense_Mutation p.Q307* 0.06 TCGA-2Y-A9H3-01 7 27142050 27142050 A T HOXA2 Missense_Mutation p.S24T 0.12 deleterious(0) probably_damaging(0.979) TCGA-2Y-A9H3-01 7 31918662 31918662 C T PDE1C Silent p.K184K 0.17 TCGA-2Y-A9H3-01 7 33644860 33644860 G A BBS9 3'UTR 0.17 TCGA-2Y-A9H3-01 7 42011935 42011935 C A GLI3 Splice_Site p.X701_splice 0.05 TCGA-2Y-A9H3-01 8 103851904 103851904 C G AZIN1 Missense_Mutation p.G84R 0.05 deleterious(0) possibly_damaging(0.882) TCGA-2Y-A9H3-01 8 133076049 133076049 C T OC90 5'Flank 0.18 TCGA-2Y-A9H3-01 8 57358254 57358254 T G PENK Intron 0.11 TCGA-2Y-A9H3-01 8 82391106 82391106 T C FABP4 Silent p.R131R 0.13 TCGA-2Y-A9H3-01 8 87557040 87557040 C G CPNE3 Missense_Mutation p.L236V 0.23 deleterious(0.03) benign(0.126) TCGA-2Y-A9H3-01 9 104184045 104184045 G A ALDOB 3'UTR 0.11 TCGA-2Y-A9H3-01 9 127265483 127265483 G A NR5A1 Missense_Mutation p.T40M 0.17 deleterious(0) probably_damaging(1) TCGA-2Y-A9H3-01 9 127570169 127570169 C T OLFML2A Silent p.D426D 0.13 TCGA-2Y-A9H3-01 9 131339545 131339545 A G SPTAN1 Missense_Mutation p.E308G 0.10 tolerated(0.12) benign(0.063) TCGA-2Y-A9H3-01 9 135779815 135779815 T C TSC1 Missense_Mutation p.D675G 0.09 deleterious(0.04) probably_damaging(0.909) TCGA-2Y-A9H3-01 9 136133489 136133489 C A RP11-430N14.4 5'Flank 0.17 TCGA-2Y-A9H3-01 9 22008820 22008820 G T CDKN2B Missense_Mutation p.R45S 0.06 tolerated(0.53) benign(0.014) TCGA-2Y-A9H3-01 9 84606758 84606758 T C SPATA31D1 Missense_Mutation p.I458T 0.12 tolerated(0.37) benign(0.02) TCGA-2Y-A9H3-01 X 111699285 111699285 G A ZCCHC16 3'UTR 0.10 TCGA-2Y-A9H3-01 X 123526164 123526164 T A TENM1 Missense_Mutation p.D1809V 0.44 deleterious(0) probably_damaging(0.997) TCGA-2Y-A9H3-01 X 30261926 30261926 T C MAGEB1 Intron 0.24 TCGA-2Y-A9H3-01 X 47444779 47444779 C T TIMP1 Intron 0.28 TCGA-2Y-A9H3-01 X 51151614 51151614 A C CXorf67 3'UTR 0.20 TCGA-2Y-A9H3-01 X 70617187 70617187 G A TAF1 Missense_Mutation p.R1184H 0.22 deleterious(0.02) benign(0.013) TCGA-2Y-A9H3-01 X 77359873 77359873 G A PGK1 Silent p.L12L 0.51 TCGA-2Y-A9H4-01 10 17363249 17363249 G - ST8SIA6 Frame_Shift_Del p.N276Tfs*29 0.12 TCGA-2Y-A9H4-01 10 93751886 93751886 A T BTAF1 Silent p.S955S 0.05 TCGA-2Y-A9H4-01 10 95191180 95191180 T C MYOF Silent p.K110K 0.05 TCGA-2Y-A9H4-01 11 120082155 120082155 C T OAF Silent p.S56S 0.38 TCGA-2Y-A9H4-01 11 123624701 123624701 A G OR6X1 Missense_Mutation p.Y176H 0.35 deleterious(0) benign(0.021) TCGA-2Y-A9H4-01 11 123777184 123777184 G A OR8D4 Missense_Mutation p.G16R 0.39 deleterious(0) probably_damaging(1) TCGA-2Y-A9H4-01 11 1268466 1268466 C A MUC5B Silent p.A3452A 0.37 TCGA-2Y-A9H4-01 11 2920711 2920711 C G SLC22A18AS Missense_Mutation p.G74A 0.17 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-2Y-A9H4-01 11 32875007 32875007 A G PRRG4 Silent p.P205P 0.43 TCGA-2Y-A9H4-01 11 55419121 55419121 T C OR4S2 Missense_Mutation p.F248L 0.34 deleterious(0.03) probably_damaging(0.998) TCGA-2Y-A9H4-01 11 65422301 65422301 C A RELA Missense_Mutation p.A402S 0.37 tolerated(0.66) benign(0.001) TCGA-2Y-A9H4-01 12 109017847 109017847 C T SELPLG Silent p.E95E 0.35 TCGA-2Y-A9H4-01 12 123186551 123186551 T C HCAR2 3'UTR 0.31 TCGA-2Y-A9H4-01 12 14839106 14839106 G A GUCY2C Silent p.T128T 0.41 TCGA-2Y-A9H4-01 12 27059306 27059306 C T ASUN Silent p.Q670Q 0.12 TCGA-2Y-A9H4-01 12 43858526 43858526 G T ADAMTS20 Nonsense_Mutation p.Y459* 0.46 TCGA-2Y-A9H4-01 12 43858528 43858528 A T ADAMTS20 Missense_Mutation p.Y459N 0.45 tolerated(0.12) benign(0.105) TCGA-2Y-A9H4-01 12 54426904 54426904 G T HOXC5 5'UTR 0.37 TCGA-2Y-A9H4-01 12 54675175 54675176 - A HNRNPA1 Frame_Shift_Ins p.E9Rfs*16 0.25 TCGA-2Y-A9H4-01 12 56222310 56222310 T - DNAJC14 Frame_Shift_Del p.T45Lfs*211 0.22 TCGA-2Y-A9H4-01 12 88484582 88484582 C A CEP290 Missense_Mutation p.V1166F 0.31 probably_damaging(0.999) TCGA-2Y-A9H4-01 12 95611038 95611038 T G FGD6 5'UTR 0.29 TCGA-2Y-A9H4-01 13 112724437 112724437 C A SOX1 3'UTR 0.44 TCGA-2Y-A9H4-01 13 23910913 23910913 C A SACS Missense_Mutation p.A2368S 0.44 benign(0.314) TCGA-2Y-A9H4-01 13 35632969 35632969 T G NBEA Missense_Mutation p.F403C 0.40 tolerated(0.25) probably_damaging(1) TCGA-2Y-A9H4-01 13 36180583 36180583 C T NBEA Silent p.Y2439Y 0.37 TCGA-2Y-A9H4-01 14 50864320 50864320 C G CDKL1 5'Flank 0.40 TCGA-2Y-A9H4-01 14 55034783 55034783 C G SAMD4A Missense_Mutation p.A50G 0.36 tolerated(0.08) possibly_damaging(0.485) TCGA-2Y-A9H4-01 14 59835462 59835462 G A DAAM1 Missense_Mutation p.R1041H 0.39 deleterious(0) probably_damaging(0.994) TCGA-2Y-A9H4-01 14 74823991 74823991 A T VRTN Missense_Mutation p.S169C 0.67 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9H4-01 15 33765670 33765670 G T RYR3 Missense_Mutation p.R34S 0.29 possibly_damaging(0.659) TCGA-2Y-A9H4-01 15 40259627 40259627 A G EIF2AK4 Missense_Mutation p.K367R 0.21 tolerated(0.56) benign(0.003) TCGA-2Y-A9H4-01 15 69238044 69238044 A G SPESP1 Silent p.K57K 0.39 TCGA-2Y-A9H4-01 15 93609252 93609252 T C RGMA Intron 0.45 TCGA-2Y-A9H4-01 16 21739616 21739616 C T OTOA Missense_Mutation p.H691Y 0.31 deleterious(0.03) probably_damaging(1) TCGA-2Y-A9H4-01 16 727559 727559 G T RHBDL1 Missense_Mutation p.M328I 0.39 tolerated(0.12) probably_damaging(0.968) TCGA-2Y-A9H4-01 17 38186019 38186019 A G MED24 Silent p.T416T 0.46 TCGA-2Y-A9H4-01 17 7579420 7579420 G - TP53 Frame_Shift_Del p.S90Pfs*33 0.38 TCGA-2Y-A9H4-01 18 13741655 13741655 T A RNMT Nonsense_Mutation p.Y313* 0.35 TCGA-2Y-A9H4-01 18 70461395 70461395 G T NETO1 Missense_Mutation p.A199D 0.20 deleterious(0.04) probably_damaging(0.991) TCGA-2Y-A9H4-01 19 14938215 14938215 A T OR7A5 Missense_Mutation p.V280E 0.48 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-2Y-A9H4-01 19 22786173 22786173 C T AC011467.1 3'Flank 0.39 TCGA-2Y-A9H4-01 19 3728689 3728689 G A TJP3 Missense_Mutation p.G55R 0.41 deleterious(0) probably_damaging(0.994) TCGA-2Y-A9H4-01 19 54169940 54169940 C A MIR512-1 RNA 0.36 TCGA-2Y-A9H4-01 19 55872803 55872803 C T FAM71E2 Splice_Site p.X189_splice 0.36 TCGA-2Y-A9H4-01 1 145578670 145578670 A G PIAS3 Missense_Mutation p.H159R 0.10 tolerated(0.34) possibly_damaging(0.868) TCGA-2Y-A9H4-01 1 153610521 153610521 A G CHTOP Intron 0.23 TCGA-2Y-A9H4-01 1 173155601 173155601 C T TNFSF4 3'UTR 0.42 TCGA-2Y-A9H4-01 1 248224048 248224048 T C OR2L3 Missense_Mutation p.I22T 0.41 tolerated(1) benign(0.003) TCGA-2Y-A9H4-01 1 76190498 76190498 G T ACADM Missense_Mutation p.C9F 0.46 deleterious_low_confidence(0.03) benign(0.045) TCGA-2Y-A9H4-01 1 86814704 86814704 A G ODF2L 3'UTR 0.34 TCGA-2Y-A9H4-01 20 1616060 1616060 T A SIRPG Missense_Mutation p.S312C 0.34 deleterious(0.02) probably_damaging(0.99) TCGA-2Y-A9H4-01 20 60639513 60639513 G A TAF4 Missense_Mutation p.P452S 0.23 probably_damaging(0.979) TCGA-2Y-A9H4-01 21 38538061 38538061 G A TTC3 Missense_Mutation p.R1182K 0.45 tolerated(0.41) benign(0.109) TCGA-2Y-A9H4-01 2 108488174 108488174 C A RGPD4 Silent p.P1238P 0.68 TCGA-2Y-A9H4-01 2 11798629 11798629 C T NTSR2 Silent p.G403G 0.29 TCGA-2Y-A9H4-01 2 210777350 210777350 G A UNC80 Missense_Mutation p.G1551R 0.33 probably_damaging(0.999) TCGA-2Y-A9H4-01 2 25141714 25141714 C G ADCY3 Missense_Mutation p.C48S 0.50 tolerated(0.09) benign(0.161) TCGA-2Y-A9H4-01 2 61597513 61597514 - A USP34 Frame_Shift_Ins p.L398Ffs*13 0.26 TCGA-2Y-A9H4-01 3 111693479 111693479 A G PHLDB2 3'UTR 0.27 TCGA-2Y-A9H4-01 3 148858010 148858010 G A HPS3 Missense_Mutation p.G146E 0.43 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9H4-01 3 185234915 185234915 C A LIPH Missense_Mutation p.G308W 0.36 deleterious(0.01) possibly_damaging(0.656) TCGA-2Y-A9H4-01 3 42727774 42727774 G A KLHL40 Missense_Mutation p.E222K 0.51 tolerated(0.19) benign(0.235) TCGA-2Y-A9H4-01 3 50649061 50649061 C T CISH Splice_Site 0.32 TCGA-2Y-A9H4-01 4 113332973 113332973 G C ALPK1 Intron 0.45 TCGA-2Y-A9H4-01 4 11401383 11401383 C A HS3ST1 Missense_Mutation p.A83S 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-2Y-A9H4-01 4 155505805 155505805 T C FGA Missense_Mutation p.D691G 0.43 deleterious(0) probably_damaging(0.997) TCGA-2Y-A9H4-01 4 155507053 155507053 G A FGA Missense_Mutation p.R510C 0.41 tolerated(0.07) probably_damaging(0.938) TCGA-2Y-A9H4-01 4 95173931 95173931 A G SMARCAD1 Missense_Mutation p.K352E 0.43 tolerated(0.34) benign(0.045) TCGA-2Y-A9H4-01 5 102886505 102886505 T G NUDT12 3'UTR 0.44 TCGA-2Y-A9H4-01 5 129240619 129240619 G A CHSY3 Missense_Mutation p.E33K 0.28 deleterious_low_confidence(0) possibly_damaging(0.636) TCGA-2Y-A9H4-01 5 130769233 130769233 T C RAPGEF6 Silent p.L1296L 0.51 TCGA-2Y-A9H4-01 5 140011393 140011393 C T CD14 3'UTR 0.24 TCGA-2Y-A9H4-01 5 140257029 140257029 G A PCDHA12 Missense_Mutation p.A658T 0.52 tolerated_low_confidence(0.05) benign(0.219) TCGA-2Y-A9H4-01 5 140537240 140537240 C T PCDHB17 Missense_Mutation p.T555M 0.49 tolerated_low_confidence(0.08) possibly_damaging(0.608) TCGA-2Y-A9H4-01 5 140773677 140773677 T C PCDHGA8 Missense_Mutation p.S433P 0.26 deleterious_low_confidence(0) possibly_damaging(0.724) TCGA-2Y-A9H4-01 5 178040819 178040819 T G CLK4 Missense_Mutation p.I190L 0.62 deleterious(0) probably_damaging(0.947) TCGA-2Y-A9H4-01 5 180622567 180622567 G A TRIM7 Missense_Mutation p.R379C 0.05 deleterious(0) probably_damaging(1) TCGA-2Y-A9H4-01 5 32789738 32789738 T A AC026703.1 Silent p.L77L 0.28 TCGA-2Y-A9H4-01 5 41382054 41382054 A G PLCXD3 Missense_Mutation p.L229P 0.31 deleterious(0) probably_damaging(0.996) TCGA-2Y-A9H4-01 5 81601093 81601093 C T ATP6AP1L 5'UTR 0.43 TCGA-2Y-A9H4-01 5 85578608 85578608 T C NBPF22P RNA 0.52 TCGA-2Y-A9H4-01 6 128320011 128320012 - A PTPRK Frame_Shift_Ins p.L845Sfs*9 0.33 TCGA-2Y-A9H4-01 6 31736935 31736935 C T VWA7 Missense_Mutation p.A455T 0.33 tolerated(0.7) benign(0.004) TCGA-2Y-A9H4-01 6 37450915 37450915 C T CCDC167 3'UTR 0.39 TCGA-2Y-A9H4-01 6 46658262 46658262 A C TDRD6 Missense_Mutation p.K799N 0.45 tolerated(0.08) benign(0.049) TCGA-2Y-A9H4-01 6 52285108 52285108 C A EFHC1 5'UTR 0.52 TCGA-2Y-A9H4-01 6 55216223 55216223 C A GFRAL Missense_Mutation p.N181K 0.40 deleterious(0.05) probably_damaging(0.986) TCGA-2Y-A9H4-01 7 100685401 100685401 G T MUC17 Missense_Mutation p.M3568I 0.49 benign(0) TCGA-2Y-A9H4-01 7 116593538 116593538 C A ST7 5'UTR 0.48 TCGA-2Y-A9H4-01 7 117307188 117307188 A G CFTR 3'UTR 0.39 TCGA-2Y-A9H4-01 7 12410068 12410068 A C VWDE Missense_Mutation p.Y622D 0.48 deleterious(0) probably_damaging(0.921) TCGA-2Y-A9H4-01 7 134719306 134719306 T G AGBL3 Missense_Mutation p.F322V 0.44 tolerated(0.06) probably_damaging(0.972) TCGA-2Y-A9H4-01 8 144297217 144297217 A T GPIHBP1 Missense_Mutation p.T127S 0.52 deleterious(0.01) possibly_damaging(0.874) TCGA-2Y-A9H4-01 8 145512865 145512865 C T BOP1 Missense_Mutation p.D74N 0.04 tolerated(0.19) possibly_damaging(0.539) TCGA-2Y-A9H4-01 8 82752214 82752214 G T SNX16 Missense_Mutation p.T3N 0.30 deleterious(0) possibly_damaging(0.703) TCGA-2Y-A9H4-01 9 103278965 103278965 G A TMEFF1 Missense_Mutation p.G158R 0.32 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9H4-01 9 119097256 119097256 G A PAPPA Missense_Mutation p.A1172T 0.33 deleterious(0) possibly_damaging(0.499) TCGA-2Y-A9H4-01 9 23692401 23692401 T C ELAVL2 3'UTR 0.40 TCGA-2Y-A9H4-01 9 80144021 80144021 G A GNA14 Silent p.D91D 0.28 TCGA-2Y-A9H4-01 X 107978096 107978096 C A IRS4 Missense_Mutation p.W493C 0.47 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-2Y-A9H4-01 X 118975219 118975222 TCTC - UPF3B Splice_Site p.X209_splice 0.83 TCGA-2Y-A9H4-01 X 3229455 3229455 C A MXRA5 Silent p.V2263V 0.71 TCGA-2Y-A9H4-01 X 78217042 78217042 A G P2RY10 3'UTR 0.50 TCGA-2Y-A9H4-01 X 99854661 99854661 C T TNMD Missense_Mutation p.R301C 0.88 deleterious(0) probably_damaging(0.994) TCGA-2Y-A9H5-01 10 112404251 112404251 C T RBM20 Silent p.P13P 0.33 TCGA-2Y-A9H5-01 10 35320492 35320492 T C CUL2 Missense_Mutation p.N428S 0.29 tolerated(1) probably_damaging(0.987) TCGA-2Y-A9H5-01 10 72195410 72195410 T C NODAL Missense_Mutation p.R175G 0.28 tolerated(0.36) benign(0.001) TCGA-2Y-A9H5-01 10 79556329 79556329 G A DLG5 Missense_Mutation p.R1730W 0.42 deleterious(0) benign(0.329) TCGA-2Y-A9H5-01 11 102742631 102742631 G A MMP12 RNA 0.26 TCGA-2Y-A9H5-01 11 18467772 18467772 C T LDHC Silent p.I242I 0.37 TCGA-2Y-A9H5-01 11 31284491 31284491 T A DCDC1 3'UTR 0.25 TCGA-2Y-A9H5-01 11 35456179 35456179 C T PAMR1 Missense_Mutation p.A520T 0.37 deleterious(0) possibly_damaging(0.782) TCGA-2Y-A9H5-01 11 4842843 4842843 C G OR51F2 Missense_Mutation p.F76L 0.32 deleterious(0.03) probably_damaging(0.977) TCGA-2Y-A9H5-01 11 59131963 59131963 C T OR5AN1 Missense_Mutation p.T11I 0.22 tolerated(0.07) benign(0.033) TCGA-2Y-A9H5-01 12 10279240 10279240 C A CLEC7A Missense_Mutation p.E90D 0.28 tolerated(0.09) benign(0.037) TCGA-2Y-A9H5-01 12 123380577 123380585 GGCGAACCG - VPS37B In_Frame_Del p.R9_A11del 0.26 TCGA-2Y-A9H5-01 12 130184653 130184653 C T TMEM132D Missense_Mutation p.V224M 0.32 tolerated(0.15) probably_damaging(0.973) TCGA-2Y-A9H5-01 12 16109926 16109926 G A DERA Missense_Mutation p.E30K 0.34 tolerated(0.55) benign(0.031) TCGA-2Y-A9H5-01 12 2787051 2787051 G T CACNA1C Intron 0.38 TCGA-2Y-A9H5-01 12 5021467 5021467 A T KCNA1 Missense_Mutation p.H308L 0.18 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9H5-01 12 50386074 50386074 T C RACGAP1 Missense_Mutation p.N511S 0.31 deleterious(0.01) benign(0.034) TCGA-2Y-A9H5-01 12 57605033 57605033 A T LRP1 Missense_Mutation p.T4331S 0.32 benign(0.001) TCGA-2Y-A9H5-01 13 108881971 108881971 A G ABHD13 Silent p.L135L 0.28 TCGA-2Y-A9H5-01 13 39587824 39587824 G A PROSER1 Missense_Mutation p.S522L 0.37 tolerated_low_confidence(0.15) benign(0.098) TCGA-2Y-A9H5-01 13 39952662 39952662 G C LHFP Silent p.G129G 0.48 TCGA-2Y-A9H5-01 14 25102229 25102229 C T GZMB Missense_Mutation p.R32H 0.39 tolerated(0.25) benign(0.288) TCGA-2Y-A9H5-01 14 78227340 78227340 G A C14orf178 5'UTR 0.30 TCGA-2Y-A9H5-01 15 22940832 22940832 A G CYFIP1 Missense_Mutation p.Y366C 0.28 deleterious(0.03) possibly_damaging(0.682) TCGA-2Y-A9H5-01 15 48736756 48736756 G A FBN1 Nonsense_Mutation p.Q2007* 0.13 TCGA-2Y-A9H5-01 15 79590285 79590285 C G ANKRD34C 3'UTR 0.05 TCGA-2Y-A9H5-01 15 85438806 85438806 G T SLC28A1 Intron 0.41 TCGA-2Y-A9H5-01 15 89826381 89826381 G A FANCI Missense_Mutation p.R533Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9H5-01 16 61935213 61935213 C G CDH8 Silent p.V139V 0.59 TCGA-2Y-A9H5-01 16 68867249 68867250 - T CDH1 Frame_Shift_Ins p.D834* 0.26 TCGA-2Y-A9H5-01 17 11881727 11881727 T G ZNF18 Silent p.P399P 0.26 TCGA-2Y-A9H5-01 17 27903137 27903137 C T GIT1 Missense_Mutation p.D551N 0.38 tolerated(0.16) benign(0.012) TCGA-2Y-A9H5-01 17 46655285 46655285 G - HOXB4 Frame_Shift_Del p.H133Tfs*18 0.24 TCGA-2Y-A9H5-01 17 48703836 48703836 C T CACNA1G Silent p.D2286D 0.19 TCGA-2Y-A9H5-01 17 59482827 59482827 C T TBX2 Missense_Mutation p.A439V 0.12 tolerated(0.16) benign(0.044) TCGA-2Y-A9H5-01 18 55315840 55315840 C T ATP8B1 Silent p.S1212S 0.05 TCGA-2Y-A9H5-01 19 1796789 1796789 G A ATP8B3 Silent p.D558D 0.35 TCGA-2Y-A9H5-01 19 19757110 19757110 T C ATP13A1 Missense_Mutation p.N1051S 0.31 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9H5-01 19 45570624 45570624 G A CLASRP Missense_Mutation p.R480K 0.45 tolerated_low_confidence(0.55) unknown(0) TCGA-2Y-A9H5-01 19 51021449 51021449 C A LRRC4B Silent p.R507R 0.32 TCGA-2Y-A9H5-01 19 6464625 6464625 C T CRB3 5'UTR 0.33 TCGA-2Y-A9H5-01 1 15707915 15707915 G T FHAD1 Missense_Mutation p.L543F 0.50 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9H5-01 1 157504613 157504613 G A FCRL5 Missense_Mutation p.T491I 0.56 deleterious(0.02) probably_damaging(0.961) TCGA-2Y-A9H5-01 1 166818813 166818813 G A POGK Missense_Mutation p.E333K 0.49 tolerated(0.47) probably_damaging(0.931) TCGA-2Y-A9H5-01 1 18807799 18807799 G - KLHDC7A Frame_Shift_Del p.A110Pfs*93 0.08 TCGA-2Y-A9H5-01 1 201981100 201981101 - G ELF3 Frame_Shift_Ins p.E62Gfs*30 0.29 TCGA-2Y-A9H5-01 1 204116030 204116030 C T ETNK2 Intron 0.49 TCGA-2Y-A9H5-01 1 237532889 237532889 G A RYR2 Missense_Mutation p.R122H 0.09 possibly_damaging(0.588) TCGA-2Y-A9H5-01 1 247007207 247007207 G A AHCTF1 Nonsense_Mutation p.Q2148* 0.23 TCGA-2Y-A9H5-01 1 26288343 26288343 A G PAFAH2 3'UTR 0.56 TCGA-2Y-A9H5-01 1 33999415 33999415 T C CSMD2 Silent p.G3180G 0.55 TCGA-2Y-A9H5-01 1 47276518 47276518 G T CYP4B1 Missense_Mutation p.W73C 0.57 deleterious(0.04) probably_damaging(1) TCGA-2Y-A9H5-01 1 75039089 75039089 G T C1orf173 Missense_Mutation p.L769M 0.06 tolerated(0.06) benign(0.442) TCGA-2Y-A9H5-01 20 30450384 30450384 C T DUSP15 Missense_Mutation p.S142N 0.27 tolerated(0.52) benign(0) TCGA-2Y-A9H5-01 20 50139906 50139906 C A NFATC2 Missense_Mutation p.A292S 0.34 tolerated(0.72) benign(0.044) TCGA-2Y-A9H5-01 20 56846549 56846549 C T PPP4R1L Intron 0.37 TCGA-2Y-A9H5-01 20 60910135 60910135 G A LAMA5 Silent p.C808C 0.10 TCGA-2Y-A9H5-01 21 41550882 41550882 G A DSCAM Silent p.N973N 0.30 TCGA-2Y-A9H5-01 22 19126717 19126717 G C DGCR14 Silent p.A259A 0.27 TCGA-2Y-A9H5-01 2 12864844 12864844 A - TRIB2 Intron 0.25 TCGA-2Y-A9H5-01 2 141457818 141457818 C T LRP1B Splice_Site p.X2267_splice 0.50 TCGA-2Y-A9H5-01 2 148672850 148672853 TGGA - ACVR2A Frame_Shift_Del p.W207Kfs*34 0.44 TCGA-2Y-A9H5-01 2 182543445 182543445 G A NEUROD1 Missense_Mutation p.A48V 0.45 tolerated(0.28) benign(0.011) TCGA-2Y-A9H5-01 2 232880381 232880381 G A DIS3L2 Silent p.Q70Q 0.46 TCGA-2Y-A9H5-01 2 65248223 65248223 C T SLC1A4 Silent p.N514N 0.06 TCGA-2Y-A9H5-01 2 99439665 99439665 C T KIAA1211L Silent p.P357P 0.04 TCGA-2Y-A9H5-01 3 49394686 49394686 C T GPX1 3'UTR 0.26 TCGA-2Y-A9H5-01 3 50355448 50355448 G - HYAL2 3'UTR 0.14 TCGA-2Y-A9H5-01 3 78706267 78706267 C T ROBO1 Silent p.E865E 0.41 TCGA-2Y-A9H5-01 4 119161760 119161760 G A NDST3 Missense_Mutation p.E734K 0.39 tolerated(0.95) benign(0.055) TCGA-2Y-A9H5-01 4 128999019 128999019 G - LARP1B Frame_Shift_Del p.S40Ifs*13 0.12 TCGA-2Y-A9H5-01 4 147431063 147431063 A T SLC10A7 Splice_Site p.X107_splice 0.39 TCGA-2Y-A9H5-01 4 52861214 52861214 G A LRRC66 Silent p.Y658Y 0.48 TCGA-2Y-A9H5-01 4 73148783 73148783 C T ADAMTS3 3'UTR 0.37 TCGA-2Y-A9H5-01 4 79851430 79851430 G A PAQR3 Missense_Mutation p.S133L 0.35 deleterious(0.03) possibly_damaging(0.628) TCGA-2Y-A9H5-01 4 83800020 83800020 G A SEC31A Silent p.L89L 0.37 TCGA-2Y-A9H5-01 4 84502954 84502954 A T AGPAT9 Missense_Mutation p.I150L 0.35 tolerated(1) benign(0.001) TCGA-2Y-A9H5-01 5 121355923 121355923 A G SRFBP1 Missense_Mutation p.I165V 0.31 tolerated(0.47) benign(0) TCGA-2Y-A9H5-01 5 135692906 135692906 G A TRPC7 Missense_Mutation p.P57L 0.31 deleterious(0) probably_damaging(0.997) TCGA-2Y-A9H5-01 5 140532812 140532812 A T PCDHB6 3'UTR 0.30 TCGA-2Y-A9H5-01 5 2752466 2752466 C T C5orf38 Nonsense_Mutation p.R30* 0.30 TCGA-2Y-A9H5-01 5 49695712 49695712 A G EMB Missense_Mutation p.V316A 0.31 tolerated(1) benign(0.002) TCGA-2Y-A9H5-01 5 887508 887508 T A BRD9 Missense_Mutation p.I229F 0.23 deleterious(0) benign(0.23) TCGA-2Y-A9H5-01 6 108365924 108365924 C A OSTM1 3'UTR 0.28 TCGA-2Y-A9H5-01 6 165693392 165693392 C T C6orf118 3'UTR 0.60 TCGA-2Y-A9H5-01 6 26250518 26250518 C T HIST1H3F Missense_Mutation p.E106K 0.05 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-2Y-A9H5-01 6 26413353 26413353 G A BTN3A1 Intron 0.27 TCGA-2Y-A9H5-01 6 29394996 29394996 C A OR11A1 Silent p.R141R 0.28 TCGA-2Y-A9H5-01 6 29571290 29571290 C A GABBR1 3'UTR 0.26 TCGA-2Y-A9H5-01 6 32008708 32008708 T C CYP21A2 Missense_Mutation p.C429R 0.16 deleterious(0) probably_damaging(1) TCGA-2Y-A9H5-01 6 55264182 55264182 C T GFRAL Missense_Mutation p.A355V 0.28 tolerated(0.13) benign(0.017) TCGA-2Y-A9H5-01 6 7585481 7585481 C T DSP Silent p.H2662H 0.26 TCGA-2Y-A9H5-01 7 107875102 107875102 G T NRCAM Missense_Mutation p.S52Y 0.25 deleterious(0) probably_damaging(1) TCGA-2Y-A9H5-01 7 23338995 23338995 G A MALSU1 Silent p.A8A 0.07 TCGA-2Y-A9H5-01 7 88965702 88965702 C T ZNF804B Missense_Mutation p.H1136Y 0.27 deleterious(0.02) possibly_damaging(0.876) TCGA-2Y-A9H5-01 8 105360974 105360974 G T DCSTAMP Missense_Mutation p.W65L 0.13 deleterious(0) possibly_damaging(0.848) TCGA-2Y-A9H5-01 8 124659239 124659239 T C KLHL38 Missense_Mutation p.R456G 0.44 deleterious(0.03) benign(0.007) TCGA-2Y-A9H5-01 8 32600258 32600258 C A NRG1 Intron 0.43 TCGA-2Y-A9H5-01 8 6566226 6566226 C T AGPAT5 Missense_Mutation p.R13C 0.30 deleterious(0.01) benign(0.161) TCGA-2Y-A9H5-01 8 68658409 68658409 G C CPA6 5'UTR 0.25 TCGA-2Y-A9H5-01 8 68965476 68965476 G A PREX2 Missense_Mutation p.R363Q 0.25 tolerated(0.05) probably_damaging(0.984) TCGA-2Y-A9H5-01 9 104238338 104238338 C T TMEM246 Missense_Mutation p.R346Q 0.29 deleterious(0.02) probably_damaging(0.994) TCGA-2Y-A9H5-01 9 117026681 117026681 G T COL27A1 Missense_Mutation p.G1081V 0.12 probably_damaging(0.988) TCGA-2Y-A9H5-01 9 127074820 127074820 G A NEK6 Silent p.S75S 0.24 TCGA-2Y-A9H5-01 9 141016411 141016411 G A CACNA1B Missense_Mutation p.R2327Q 0.50 tolerated(0.12) benign(0.365) TCGA-2Y-A9H5-01 9 74327050 74327050 G C TMEM2 Silent p.S906S 0.34 TCGA-2Y-A9H5-01 9 84202721 84202721 C A TLE1 Nonsense_Mutation p.G618* 0.46 TCGA-2Y-A9H5-01 9 94495533 94495533 T C ROR2 Missense_Mutation p.I270V 0.21 tolerated(0.11) benign(0.1) TCGA-2Y-A9H5-01 9 95797700 95797700 G T FGD3 Silent p.G669G 0.46 TCGA-2Y-A9H5-01 X 100169977 100169977 G A XKRX Missense_Mutation p.R234C 0.03 deleterious(0) possibly_damaging(0.825) TCGA-2Y-A9H5-01 X 11132958 11132958 G T HCCS Missense_Mutation p.C35F 0.18 deleterious(0.02) probably_damaging(0.944) TCGA-2Y-A9H5-01 X 111699543 111699543 T C ZCCHC16 3'UTR 0.32 TCGA-2Y-A9H5-01 X 123517915 123517915 T G TENM1 Missense_Mutation p.H2289P 0.46 deleterious(0) probably_damaging(0.993) TCGA-2Y-A9H5-01 X 142718857 142718857 G A SLITRK4 Missense_Mutation p.S23L 0.33 tolerated(0.57) benign(0.017) TCGA-2Y-A9H5-01 X 153049751 153049751 C G SRPK3 Missense_Mutation p.P384A 0.33 tolerated(0.17) possibly_damaging(0.539) TCGA-2Y-A9H5-01 X 32235037 32235037 A T DMD Missense_Mutation p.L2145H 0.09 probably_damaging(0.938) TCGA-2Y-A9H5-01 X 48678643 48678643 G T HDAC6 Missense_Mutation p.R773L 0.26 deleterious(0) probably_damaging(0.971) TCGA-2Y-A9H5-01 X 48755074 48755074 G A TIMM17B 5'UTR 0.34 TCGA-2Y-A9H5-01 X 73963443 73963443 A C KIAA2022 Missense_Mutation p.F317V 0.36 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9H6-01 10 102107055 102107055 A G SCD 5'UTR 0.24 TCGA-2Y-A9H6-01 10 13154620 13154620 T G OPTN Silent p.V179V 0.09 TCGA-2Y-A9H6-01 10 55566853 55566853 C T PCDH15 Missense_Mutation p.R1511Q 0.45 tolerated_low_confidence(0.09) benign(0.098) TCGA-2Y-A9H6-01 10 73857091 73857091 C T ASCC1 3'UTR 0.33 TCGA-2Y-A9H6-01 10 85974200 85974200 G T CDHR1 Silent p.A801A 0.02 TCGA-2Y-A9H6-01 10 93683796 93683796 G A BTAF1 5'UTR 0.28 TCGA-2Y-A9H6-01 11 108369075 108369075 C A KDELC2 Missense_Mutation p.A7S 0.27 tolerated(0.84) unknown(0) TCGA-2Y-A9H6-01 11 32622379 32622379 G T EIF3M Splice_Site p.X315_splice 0.08 TCGA-2Y-A9H6-01 11 33308510 33308510 T A HIPK3 Missense_Mutation p.L184I 0.43 deleterious(0.01) possibly_damaging(0.886) TCGA-2Y-A9H6-01 11 720644 720644 G C EPS8L2 Silent p.T125T 0.52 TCGA-2Y-A9H6-01 11 74987895 74987895 A G ARRB1 Missense_Mutation p.M255T 0.33 tolerated(0.65) benign(0.001) TCGA-2Y-A9H6-01 11 9606816 9606816 A G WEE1 Missense_Mutation p.I434V 0.40 tolerated(0.05) benign(0.439) TCGA-2Y-A9H6-01 12 6710863 6710863 C A CHD4 Nonsense_Mutation p.E170* 0.34 TCGA-2Y-A9H6-01 12 81769684 81769684 G T PPFIA2 Missense_Mutation p.T341K 0.25 deleterious(0) possibly_damaging(0.887) TCGA-2Y-A9H6-01 13 111365281 111365281 G A ING1 5'Flank 0.40 TCGA-2Y-A9H6-01 13 21175975 21175975 A G IFT88 Missense_Mutation p.Y324C 0.04 tolerated(0.09) benign(0.025) TCGA-2Y-A9H6-01 13 50589225 50589260 AAAAAAATATATATATATATATATATATATATATAT - TRIM13 3'Flank 0.36 TCGA-2Y-A9H6-01 13 79190626 79190626 T C RNF219 Missense_Mutation p.R424G 0.05 deleterious(0) probably_damaging(0.997) TCGA-2Y-A9H6-01 14 68331792 68331802 AACATGGGAGG - RAD51B Frame_Shift_Del p.N130Ifs*9 0.19 TCGA-2Y-A9H6-01 15 25219596 25219596 C T SNRPN 5'UTR 0.25 TCGA-2Y-A9H6-01 15 50903454 50903454 T C TRPM7 Missense_Mutation p.M706V 0.26 deleterious(0) possibly_damaging(0.898) TCGA-2Y-A9H6-01 16 1020930 1020930 C T LMF1 Silent p.R17R 0.27 TCGA-2Y-A9H6-01 16 150499 150499 G C NPRL3 Missense_Mutation p.T213R 0.35 deleterious(0) benign(0.104) TCGA-2Y-A9H6-01 16 1808157 1808157 T C MAPK8IP3 Missense_Mutation p.S408P 0.33 deleterious(0.01) benign(0.221) TCGA-2Y-A9H6-01 17 3788636 3788636 T C CAMKK1 Missense_Mutation p.I116V 0.10 tolerated(0.09) probably_damaging(0.94) TCGA-2Y-A9H6-01 17 48684344 48684344 C T CACNA1G Silent p.D1502D 0.24 TCGA-2Y-A9H6-01 17 5041019 5041019 C T USP6 Missense_Mutation p.T300I 0.31 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-2Y-A9H6-01 17 65026622 65026622 C T CACNG4 Silent p.S162S 0.08 TCGA-2Y-A9H6-01 17 65920661 65920661 A G BPTF Splice_Site p.X1903_splice 0.30 TCGA-2Y-A9H6-01 17 7247901 7247901 C A ACAP1 Missense_Mutation p.P263H 0.38 deleterious(0) benign(0.376) TCGA-2Y-A9H6-01 17 7504837 7504837 T C FXR2 Missense_Mutation p.T184A 0.35 tolerated(0.13) benign(0.005) TCGA-2Y-A9H6-01 17 80045255 80045255 T C FASN Missense_Mutation p.I1057V 0.30 tolerated(0.21) benign(0.131) TCGA-2Y-A9H6-01 18 3729263 3729263 C T DLGAP1 Missense_Mutation p.R488H 0.27 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9H6-01 18 47800628 47800639 GTCGCAGCAGAA - MBD1 In_Frame_Del p.F355_D358del 0.15 TCGA-2Y-A9H6-01 18 65181841 65181841 G A DSEL Missense_Mutation p.A12V 0.05 deleterious_low_confidence(0.03) possibly_damaging(0.873) TCGA-2Y-A9H6-01 18 72913258 72913258 T C ZADH2 3'UTR 0.25 TCGA-2Y-A9H6-01 19 1011186 1011186 T C TMEM259 Missense_Mutation p.Y409C 0.17 deleterious(0) probably_damaging(0.995) TCGA-2Y-A9H6-01 19 12059298 12059298 A T ZNF700 Silent p.A153A 0.28 TCGA-2Y-A9H6-01 19 2900991 2900991 C T ZNF57 5'UTR 0.25 TCGA-2Y-A9H6-01 19 39899343 39899343 A G ZFP36 3'UTR 0.34 TCGA-2Y-A9H6-01 19 42814219 42814219 C G PRR19 Missense_Mutation p.F161L 0.24 deleterious(0) probably_damaging(0.994) TCGA-2Y-A9H6-01 19 49651354 49651354 C T PPFIA3 Silent p.G950G 0.26 TCGA-2Y-A9H6-01 19 54313990 54313990 C T NLRP12 Missense_Mutation p.G308E 0.14 tolerated(0.31) probably_damaging(0.926) TCGA-2Y-A9H6-01 19 55997831 55997831 G A NAT14 Silent p.P43P 0.08 TCGA-2Y-A9H6-01 1 152883099 152883099 C T IVL Missense_Mutation p.P276S 0.22 tolerated_low_confidence(0.14) possibly_damaging(0.826) TCGA-2Y-A9H6-01 1 190067855 190067855 G T BRINP3 Silent p.R532R 0.23 TCGA-2Y-A9H6-01 1 206634912 206634912 C T SRGAP2 3'UTR 0.09 TCGA-2Y-A9H6-01 1 207649630 207649630 G A CR2 Missense_Mutation p.G923D 0.24 deleterious(0.01) probably_damaging(0.98) TCGA-2Y-A9H6-01 1 227223280 227223280 A G CDC42BPA Silent p.C1041C 0.23 TCGA-2Y-A9H6-01 1 245809435 245809435 G A KIF26B Missense_Mutation p.R704H 0.45 deleterious(0.01) unknown(0) TCGA-2Y-A9H6-01 1 247588425 247588425 C T NLRP3 Silent p.V560V 0.03 TCGA-2Y-A9H6-01 1 74819702 74819702 G A FPGT-TNNI3K Missense_Mutation p.V470I 0.51 deleterious(0.04) benign(0.102) TCGA-2Y-A9H6-01 20 35866808 35866808 C A RPN2 Intron 0.30 TCGA-2Y-A9H6-01 22 20457142 20457142 C A RIMBP3 Missense_Mutation p.C1387F 0.13 tolerated(0.2) possibly_damaging(0.546) TCGA-2Y-A9H6-01 22 43253334 43253334 G A ARFGAP3 5'UTR 0.09 TCGA-2Y-A9H6-01 22 48942553 48942553 C G CTA-299D3.8 5'UTR 0.40 TCGA-2Y-A9H6-01 2 219134849 219134849 C A AAMP 5'UTR 0.37 TCGA-2Y-A9H6-01 2 228881378 228881378 G T SPHKAP Missense_Mutation p.P1398T 0.28 tolerated(0.65) benign(0) TCGA-2Y-A9H6-01 2 38294210 38294210 T A RMDN2 3'UTR 0.26 TCGA-2Y-A9H6-01 2 38294230 38294230 C A RMDN2 3'UTR 0.22 TCGA-2Y-A9H6-01 2 53977937 53977937 G A ASB3 Missense_Mutation p.T148M 0.06 deleterious(0.01) probably_damaging(0.993) TCGA-2Y-A9H6-01 2 6991720 6991720 G A CMPK2 Missense_Mutation p.P363S 0.32 deleterious(0) probably_damaging(1) TCGA-2Y-A9H6-01 2 85981810 85981810 A G ATOH8 Silent p.S166S 0.28 TCGA-2Y-A9H6-01 2 97274706 97274708 CTT - KANSL3 In_Frame_Del p.K493del 0.26 TCGA-2Y-A9H6-01 3 183446490 183446490 G A YEATS2 Silent p.P221P 0.31 TCGA-2Y-A9H6-01 3 186980462 186980462 G A MASP1 Missense_Mutation p.T95I 0.07 deleterious(0.01) benign(0.014) TCGA-2Y-A9H6-01 3 32995552 32995552 T A CCR4 Missense_Mutation p.I213N 0.55 deleterious(0) possibly_damaging(0.903) TCGA-2Y-A9H6-01 3 48688438 48688438 G C CELSR3 Missense_Mutation p.S2086W 0.04 deleterious(0) probably_damaging(1) TCGA-2Y-A9H6-01 3 52442001 52442005 CTTCA - BAP1 Frame_Shift_Del p.M115Rfs*9 0.43 TCGA-2Y-A9H6-01 4 113199372 113199372 T A TIFA Silent p.R67R 0.43 TCGA-2Y-A9H6-01 4 155156796 155156796 A G DCHS2 Missense_Mutation p.L2548S 0.34 deleterious(0.02) benign(0.076) TCGA-2Y-A9H6-01 4 47685816 47685816 C A CORIN Missense_Mutation p.C318F 0.43 deleterious(0) probably_damaging(1) TCGA-2Y-A9H6-01 5 15936876 15936876 C A FBXL7 Silent p.R353R 0.23 TCGA-2Y-A9H6-01 5 311465 311465 G A PDCD6 Missense_Mutation p.G142E 0.31 deleterious(0.02) possibly_damaging(0.585) TCGA-2Y-A9H6-01 5 86672234 86672234 G - RASA1 Frame_Shift_Del p.R679Hfs*20 0.25 TCGA-2Y-A9H6-01 5 99871275 99871275 T A FAM174A Nonsense_Mutation p.L14* 0.04 TCGA-2Y-A9H6-01 6 31914168 31914168 G T CFB Missense_Mutation p.W530L 0.39 tolerated_low_confidence(1) benign(0) TCGA-2Y-A9H6-01 6 70926498 70926498 T C COL9A1 3'UTR 0.05 TCGA-2Y-A9H6-01 7 115850599 115850599 G A TES 5'UTR 0.40 TCGA-2Y-A9H6-01 7 133821880 133821880 A G LRGUK Silent p.L134L 0.29 TCGA-2Y-A9H6-01 7 36373513 36373513 C T KIAA0895 Missense_Mutation p.D420N 0.32 deleterious(0.01) probably_damaging(0.993) TCGA-2Y-A9H6-01 8 1719549 1719549 C G CLN8 Missense_Mutation p.A110G 0.04 deleterious(0.01) probably_damaging(0.982) TCGA-2Y-A9H6-01 8 67789682 67789682 T C MCMDC2 Silent p.Y128Y 0.27 TCGA-2Y-A9H6-01 9 136595229 136595229 A C SARDH Silent p.T257T 0.07 TCGA-2Y-A9H6-01 9 33932569 33932569 C T UBAP2 Silent p.T722T 0.54 TCGA-2Y-A9H6-01 9 6329596 6329596 C G TPD52L3 3'UTR 0.50 TCGA-2Y-A9H6-01 9 69389993 69389993 G A ANKRD20A4 Missense_Mutation p.E183K 0.24 deleterious(0) benign(0.096) TCGA-2Y-A9H6-01 X 140995873 140995873 G A MAGEC1 Missense_Mutation p.E895K 0.34 deleterious(0.01) unknown(0) TCGA-2Y-A9H6-01 X 151283912 151283912 T A RP11-1007I13.4 RNA 0.38 TCGA-2Y-A9H6-01 X 152612617 152612617 C T ZNF275 Silent p.P158P 0.31 TCGA-2Y-A9H6-01 X 21675401 21675401 G T KLHL34 Missense_Mutation p.A169E 0.42 deleterious(0.02) benign(0.077) TCGA-2Y-A9H6-01 X 36366324 36366324 G A CXorf30 Missense_Mutation p.V288I 0.03 tolerated(0.08) benign(0.287) TCGA-2Y-A9H6-01 X 54781461 54781461 C G ITIH6 Missense_Mutation p.G1064A 0.23 tolerated(0.7) benign(0.003) TCGA-2Y-A9H7-01 10 124189324 124189324 C T PLEKHA1 Missense_Mutation p.S362F 0.39 tolerated(0.06) benign(0.259) TCGA-2Y-A9H7-01 10 18270325 18270325 A T SLC39A12 Missense_Mutation p.S337C 0.34 tolerated(0.33) benign(0.029) TCGA-2Y-A9H7-01 10 49658574 49658574 C T ARHGAP22 Missense_Mutation p.R549H 0.44 deleterious(0.04) benign(0.09) TCGA-2Y-A9H7-01 10 50872913 50872913 C A CHAT Missense_Mutation p.L690I 0.33 tolerated(0.66) benign(0.122) TCGA-2Y-A9H7-01 10 75490211 75490211 C A RP11-574K11.28 Intron 0.39 TCGA-2Y-A9H7-01 11 117078731 117078738 CCCAGCAT G PCSK7 Frame_Shift_Del p.C579Gfs*30 0.10 TCGA-2Y-A9H7-01 11 13984575 13984575 G A SPON1 RNA 0.37 TCGA-2Y-A9H7-01 11 18553955 18553955 T C UEVLD Missense_Mutation p.K443R 0.35 tolerated(0.13) benign(0.001) TCGA-2Y-A9H7-01 11 27389741 27389741 G A LGR4 Silent p.Y843Y 0.38 TCGA-2Y-A9H7-01 11 613275 613275 A - IRF7 Frame_Shift_Del p.S403Pfs*62 0.21 TCGA-2Y-A9H7-01 11 7022371 7022371 T C ZNF214 Silent p.E181E 0.36 TCGA-2Y-A9H7-01 11 94281937 94281937 T C FUT4 3'UTR 0.36 TCGA-2Y-A9H7-01 11 94801921 94801921 G T SRSF8 3'UTR 0.35 TCGA-2Y-A9H7-01 12 103352142 103352170 CGCAGCCGCCGCAGCGGCAGCGCAGAGCG - ASCL1 Frame_Shift_Del p.Q48Afs*99 0.46 TCGA-2Y-A9H7-01 12 110719613 110719613 A C ATP2A2 Missense_Mutation p.K7Q 0.37 tolerated(0.1) benign(0.169) TCGA-2Y-A9H7-01 12 112119568 112119568 G A BRAP Missense_Mutation p.H106Y 0.42 deleterious(0.04) benign(0.007) TCGA-2Y-A9H7-01 12 113876056 113876056 C T SDSL 3'UTR 0.40 TCGA-2Y-A9H7-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.35 deleterious(0.04) probably_damaging(0.993) TCGA-2Y-A9H7-01 12 26864115 26864115 T C ITPR2 Silent p.L314L 0.42 TCGA-2Y-A9H7-01 12 27058314 27058314 A T ASUN 3'UTR 0.38 TCGA-2Y-A9H7-01 12 57030145 57030145 T C BAZ2A 5'UTR 0.45 TCGA-2Y-A9H7-01 13 44411471 44411471 T A CCDC122 Missense_Mutation p.Q256L 0.39 tolerated(0.14) benign(0.016) TCGA-2Y-A9H7-01 13 50590273 50590273 G C TRIM13 3'Flank 0.36 TCGA-2Y-A9H7-01 13 53010479 53010479 C A VPS36 Missense_Mutation p.Q99H 0.41 tolerated(0.12) possibly_damaging(0.769) TCGA-2Y-A9H7-01 14 39560758 39560758 G A SEC23A Missense_Mutation p.H176Y 0.41 tolerated(0.07) benign(0.421) TCGA-2Y-A9H7-01 14 64699953 64699953 C T ESR2 Missense_Mutation p.V499M 0.34 tolerated(0.2) benign(0.004) TCGA-2Y-A9H7-01 14 65054887 65054887 C T PPP1R36 Missense_Mutation p.T319I 0.50 deleterious(0) probably_damaging(0.992) TCGA-2Y-A9H7-01 14 68265207 68265207 G C ZFYVE26 Missense_Mutation p.P591R 0.40 tolerated(0.22) benign(0.226) TCGA-2Y-A9H7-01 14 89038562 89038562 A G ZC3H14 Missense_Mutation p.N142D 0.41 tolerated(0.6) benign(0.038) TCGA-2Y-A9H7-01 15 31197246 31197246 C A FAN1 Missense_Mutation p.P127H 0.39 deleterious(0) probably_damaging(0.969) TCGA-2Y-A9H7-01 15 35148929 35148930 - A AQR 3'UTR 0.28 TCGA-2Y-A9H7-01 15 75501057 75501057 C T C15orf39 Missense_Mutation p.P890S 0.49 tolerated(0.05) benign(0.002) TCGA-2Y-A9H7-01 15 85326095 85326095 G T ZNF592 Silent p.V63V 0.35 TCGA-2Y-A9H7-01 16 2141435 2141435 G A PKD1 Silent p.L3901L 0.65 TCGA-2Y-A9H7-01 16 32077462 32077462 G A IGHV3OR16-9 Missense_Mutation p.G26E 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.866) TCGA-2Y-A9H7-01 16 396147 396147 C G AXIN1 Splice_Site p.X293_splice 0.94 TCGA-2Y-A9H7-01 16 66811151 66811151 T G CCDC79 Missense_Mutation p.K314Q 0.56 tolerated(0.1) possibly_damaging(0.468) TCGA-2Y-A9H7-01 16 67702330 67702330 C T C16orf86 Missense_Mutation p.H261Y 0.67 tolerated(0.17) benign(0.291) TCGA-2Y-A9H7-01 16 731813 731813 G A STUB1 Missense_Mutation p.R182Q 0.74 tolerated(0.56) benign(0) TCGA-2Y-A9H7-01 17 27778638 27778638 A C TAOK1 Silent p.P24P 0.43 TCGA-2Y-A9H7-01 17 28380584 28380584 C G EFCAB5 Missense_Mutation p.L538V 0.40 tolerated(0.25) benign(0.311) TCGA-2Y-A9H7-01 17 40620078 40620078 G C ATP6V0A1 Missense_Mutation p.G83R 0.37 tolerated(0.17) probably_damaging(0.979) TCGA-2Y-A9H7-01 17 55123480 55123480 C T RNF126P1 RNA 0.32 TCGA-2Y-A9H7-01 17 61615955 61615955 C T KCNH6 Missense_Mutation p.S629F 0.43 deleterious(0) possibly_damaging(0.811) TCGA-2Y-A9H7-01 17 76210286 76210286 C A BIRC5 5'UTR 0.12 TCGA-2Y-A9H7-01 17 7722313 7722313 G A DNAH2 Missense_Mutation p.A3583T 0.46 possibly_damaging(0.731) TCGA-2Y-A9H7-01 17 79254478 79254478 A C SLC38A10 Missense_Mutation p.V186G 0.33 deleterious(0.01) benign(0.119) TCGA-2Y-A9H7-01 18 70417298 70417298 G A NETO1 Missense_Mutation p.R514W 0.40 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-2Y-A9H7-01 18 77474841 77474841 A T CTDP1 Missense_Mutation p.S461C 0.35 deleterious(0.01) possibly_damaging(0.765) TCGA-2Y-A9H7-01 19 11491864 11491864 T A EPOR Missense_Mutation p.T203S 0.40 tolerated(0.11) benign(0.067) TCGA-2Y-A9H7-01 19 18547823 18547824 CG - ISYNA1 Frame_Shift_Del p.A125Gfs*92 0.30 TCGA-2Y-A9H7-01 19 1986415 1986415 C G BTBD2 3'UTR 0.06 TCGA-2Y-A9H7-01 19 39972548 39972548 G A TIMM50 Missense_Mutation p.S148N 0.35 tolerated(0.31) benign(0.075) TCGA-2Y-A9H7-01 19 43382260 43382260 T A PSG1 Missense_Mutation p.I79F 0.47 deleterious(0.01) probably_damaging(0.953) TCGA-2Y-A9H7-01 19 8160952 8160952 C G FBN3 Missense_Mutation p.C1851S 0.38 deleterious(0) probably_damaging(1) TCGA-2Y-A9H7-01 1 151337513 151337513 C T SELENBP1 Missense_Mutation p.R382Q 0.25 tolerated(0.06) benign(0.02) TCGA-2Y-A9H7-01 1 158648224 158648224 A G SPTA1 Missense_Mutation p.L260P 0.34 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9H7-01 1 16263693 16263693 T G SPEN Silent p.P3354P 0.49 TCGA-2Y-A9H7-01 1 17026483 17026483 C T ESPNP RNA 0.24 TCGA-2Y-A9H7-01 1 172356496 172356496 G T DNM3 Missense_Mutation p.R761L 0.29 tolerated_low_confidence(0.47) benign(0.003) TCGA-2Y-A9H7-01 1 204913476 204913476 T G NFASC Missense_Mutation p.H11Q 0.58 tolerated(0.17) benign(0.039) TCGA-2Y-A9H7-01 1 224559054 224559054 G A CNIH4 Silent p.L107L 0.28 TCGA-2Y-A9H7-01 1 237947690 237947690 G A RYR2 Silent p.P4226P 0.55 TCGA-2Y-A9H7-01 1 248551472 248551472 C T OR2T6 Missense_Mutation p.A188V 0.56 tolerated(0.05) benign(0.26) TCGA-2Y-A9H7-01 1 36559008 36559008 G C ADPRHL2 3'UTR 0.49 TCGA-2Y-A9H7-01 1 46499912 46499912 G A MAST2 Missense_Mutation p.R1281Q 0.69 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-2Y-A9H7-01 20 31021697 31021697 G T ASXL1 Nonsense_Mutation p.E566* 0.37 TCGA-2Y-A9H7-01 20 49232571 49232571 G A FAM65C Missense_Mutation p.R102C 0.43 tolerated(0.08) benign(0.001) TCGA-2Y-A9H7-01 2 160289825 160289825 G C BAZ2B Missense_Mutation p.S448W 0.31 possibly_damaging(0.854) TCGA-2Y-A9H7-01 2 170058284 170058284 C G LRP2 Missense_Mutation p.G2769A 0.42 benign(0.061) TCGA-2Y-A9H7-01 2 179718305 179718305 C T CCDC141 Missense_Mutation p.G1036E 0.36 deleterious(0) probably_damaging(0.954) TCGA-2Y-A9H7-01 2 210778536 210778536 T C UNC80 Missense_Mutation p.L1568S 0.40 probably_damaging(0.961) TCGA-2Y-A9H7-01 2 27587708 27587708 G A EIF2B4 Missense_Mutation p.R437W 0.05 deleterious(0) probably_damaging(0.97) TCGA-2Y-A9H7-01 2 40387905 40387905 C A SLC8A1 Missense_Mutation p.G757W 0.33 deleterious(0) probably_damaging(0.996) TCGA-2Y-A9H7-01 2 85590252 85590252 G A ELMOD3 Silent p.Q54Q 0.51 TCGA-2Y-A9H7-01 3 113672983 113672983 A T ZDHHC23 Missense_Mutation p.S200C 0.34 tolerated(0.06) benign(0.033) TCGA-2Y-A9H7-01 3 13546008 13546008 G A HDAC11 Missense_Mutation p.R290H 0.45 deleterious(0.01) probably_damaging(0.988) TCGA-2Y-A9H7-01 3 180666144 180666144 A G FXR1 Missense_Mutation p.I94V 0.39 tolerated(0.42) probably_damaging(0.985) TCGA-2Y-A9H7-01 3 45989339 45989339 G A CXCR6 3'Flank 0.39 TCGA-2Y-A9H7-01 3 51297607 51297607 G A DOCK3 Silent p.K735K 0.40 TCGA-2Y-A9H7-01 3 9412987 9412987 G A THUMPD3 Missense_Mutation p.A192T 0.33 tolerated(0.16) benign(0.003) TCGA-2Y-A9H7-01 3 9807539 9807539 T A OGG1 Missense_Mutation p.L332H 0.42 deleterious(0) benign(0.129) TCGA-2Y-A9H7-01 4 106164733 106164733 C T TET2 Missense_Mutation p.R1201C 0.30 deleterious(0) probably_damaging(1) TCGA-2Y-A9H7-01 4 153253807 153253807 C T FBXW7 Missense_Mutation p.R309H 0.04 tolerated(0.09) benign(0.125) TCGA-2Y-A9H7-01 4 187509747 187509747 C A FAT1 Nonstop_Mutation p.*4589Lext*94 0.26 TCGA-2Y-A9H7-01 4 187630712 187630712 G A FAT1 Silent p.L90L 0.39 TCGA-2Y-A9H7-01 4 72994622 72994622 A G NPFFR2 Missense_Mutation p.D207G 0.37 tolerated(0.07) probably_damaging(1) TCGA-2Y-A9H7-01 4 84205844 84205844 C T COQ2 Missense_Mutation p.R75Q 0.47 deleterious_low_confidence(0.02) benign(0.073) TCGA-2Y-A9H7-01 5 176056620 176056620 C T SNCB Silent p.K12K 0.41 TCGA-2Y-A9H7-01 5 176733976 176733976 G T MXD3 3'Flank 0.48 TCGA-2Y-A9H7-01 5 178358992 178358992 C T ZFP2 Silent p.S226S 0.43 TCGA-2Y-A9H7-01 5 42799777 42799779 AAG - CCDC152 In_Frame_Del p.E222del 0.37 TCGA-2Y-A9H7-01 5 52386569 52386569 C A ITGA2 3'UTR 0.40 TCGA-2Y-A9H7-01 6 132021685 132021685 G C OR2A4 Missense_Mutation p.P286R 0.65 deleterious(0) probably_damaging(0.961) TCGA-2Y-A9H7-01 6 136871557 136871557 T C RP3-325F22.5 5'Flank 0.62 TCGA-2Y-A9H7-01 6 36564715 36564715 C A SRSF3 Missense_Mutation p.A59E 0.34 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9H7-01 6 41121748 41121748 G C TREML1 Missense_Mutation p.L42V 0.44 tolerated(0.27) benign(0.412) TCGA-2Y-A9H7-01 6 41558024 41558024 A G FOXP4 Missense_Mutation p.H458R 0.34 tolerated(0.6) possibly_damaging(0.824) TCGA-2Y-A9H7-01 6 49660428 49660428 C T CRISP2 3'UTR 0.27 TCGA-2Y-A9H7-01 7 102105174 102105174 T C ALKBH4 Missense_Mutation p.E37G 0.40 tolerated(0.06) benign(0.028) TCGA-2Y-A9H7-01 7 102105175 102105175 C T ALKBH4 Missense_Mutation p.E37K 0.40 tolerated(0.33) benign(0.01) TCGA-2Y-A9H7-01 7 107356119 107356119 G T SLC26A4 3'UTR 0.32 TCGA-2Y-A9H7-01 7 142626585 142626585 C T TRPV5 Missense_Mutation p.S142N 0.42 tolerated(0.19) benign(0.006) TCGA-2Y-A9H7-01 7 38543259 38543259 C A AMPH Missense_Mutation p.A66S 0.40 tolerated(0.48) probably_damaging(0.999) TCGA-2Y-A9H7-01 7 96635545 96635547 CAC - DLX6 In_Frame_Del p.H91del 0.09 TCGA-2Y-A9H7-01 7 99097503 99097503 A C ZNF394 Missense_Mutation p.Y72D 0.34 deleterious(0) probably_damaging(1) TCGA-2Y-A9H7-01 8 11189172 11189172 G T SLC35G5 Missense_Mutation p.G186V 0.61 tolerated(0.05) probably_damaging(0.93) TCGA-2Y-A9H7-01 8 124449502 124449502 C A WDYHV1 Silent p.R146R 0.42 TCGA-2Y-A9H7-01 8 23538754 23538754 A T NKX3-1 Missense_Mutation p.W229R 0.70 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9H7-01 9 115179158 115179158 G T HSDL2 Missense_Mutation p.V145F 0.47 deleterious(0.02) benign(0.174) TCGA-2Y-A9H7-01 9 130943066 130943066 C A CIZ1 Nonsense_Mutation p.E206* 0.38 TCGA-2Y-A9H7-01 X 13752898 13752898 T A OFD1 5'UTR 0.63 TCGA-2Y-A9H7-01 X 70327579 70327579 T C IL2RG 3'UTR 0.75 TCGA-2Y-A9H8-01 10 112349410 112349410 G A SMC3 Silent p.L451L 0.24 TCGA-2Y-A9H8-01 10 123845998 123845998 G T TACC2 Missense_Mutation p.C1328F 0.20 benign(0.031) TCGA-2Y-A9H8-01 10 93811980 93811980 G A CPEB3 Missense_Mutation p.R696C 0.57 deleterious(0) possibly_damaging(0.886) TCGA-2Y-A9H8-01 11 1578679 1578679 G A DUSP8 Missense_Mutation p.T316M 0.14 tolerated(0.12) benign(0.013) TCGA-2Y-A9H8-01 11 47744606 47744606 A T FNBP4 Silent p.P909P 0.10 TCGA-2Y-A9H8-01 11 65638736 65638736 C T EFEMP2 Missense_Mutation p.V87I 0.49 tolerated(0.67) benign(0.044) TCGA-2Y-A9H8-01 11 9754136 9754136 G A SWAP70 Missense_Mutation p.R320H 0.47 deleterious(0) probably_damaging(0.943) TCGA-2Y-A9H8-01 12 123687524 123687524 C T MPHOSPH9 Silent p.P324P 0.66 TCGA-2Y-A9H8-01 12 133254296 133254296 C T POLE Silent p.Q196Q 0.70 TCGA-2Y-A9H8-01 12 14927300 14927300 C T H2AFJ 5'UTR 0.47 TCGA-2Y-A9H8-01 12 33560128 33560128 G C SYT10 Missense_Mutation p.Q225E 0.24 tolerated(0.42) benign(0.003) TCGA-2Y-A9H8-01 12 6747504 6747504 C T ACRBP Missense_Mutation p.V526I 0.21 tolerated(0.6) benign(0.001) TCGA-2Y-A9H8-01 12 77199187 77199187 G T ZDHHC17 Missense_Mutation p.W96C 0.49 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9H8-01 13 27847361 27847361 T - RASL11A Frame_Shift_Del p.H153Qfs*13 0.38 TCGA-2Y-A9H8-01 14 20586326 20586326 T A OR4K17 Missense_Mutation p.I254K 0.05 deleterious(0.01) benign(0.03) TCGA-2Y-A9H8-01 14 42356105 42356105 C A LRFN5 Missense_Mutation p.H93N 0.21 tolerated(0.25) benign(0.348) TCGA-2Y-A9H8-01 14 68189238 68189238 G T RDH12 5'UTR 0.39 TCGA-2Y-A9H8-01 15 44964221 44964221 A G PATL2 Missense_Mutation p.Y217H 0.61 deleterious(0) probably_damaging(1) TCGA-2Y-A9H8-01 15 79165284 79165284 G A MORF4L1 5'UTR 0.26 TCGA-2Y-A9H8-01 15 85652345 85652345 C T PDE8A Silent p.A366A 0.70 TCGA-2Y-A9H8-01 15 94901809 94901809 G T MCTP2 Missense_Mutation p.K423N 0.61 deleterious(0) possibly_damaging(0.888) TCGA-2Y-A9H8-01 16 23486224 23486224 C G GGA2 Splice_Site p.X484_splice 0.65 TCGA-2Y-A9H8-01 16 53737983 53737983 A G FTO 5'UTR 0.54 TCGA-2Y-A9H8-01 16 70601427 70601427 A T SF3B3 Missense_Mutation p.K980N 0.67 deleterious(0) probably_damaging(1) TCGA-2Y-A9H8-01 16 706396 706396 G A WDR90 Silent p.T687T 0.33 TCGA-2Y-A9H8-01 17 18565670 18565670 A G ZNF286B Silent p.Y383Y 0.55 TCGA-2Y-A9H8-01 17 20358627 20358627 G T LGALS9B Missense_Mutation p.R177S 0.67 tolerated(0.12) possibly_damaging(0.456) TCGA-2Y-A9H8-01 17 32953981 32953981 G A TMEM132E Silent p.R211R 0.27 TCGA-2Y-A9H8-01 17 39597054 39597054 A G KRT38 Silent p.I40I 0.26 TCGA-2Y-A9H8-01 17 40021606 40021606 C T KLHL11 Silent p.V6V 0.23 TCGA-2Y-A9H8-01 17 42157529 42157529 C G HDAC5 Missense_Mutation p.D965H 0.26 deleterious(0) probably_damaging(1) TCGA-2Y-A9H8-01 17 48687257 48687257 G T CACNA1G Missense_Mutation p.D1574Y 0.33 tolerated(0.64) possibly_damaging(0.738) TCGA-2Y-A9H8-01 17 61568652 61568652 G A ACE Nonsense_Mutation p.W941* 0.20 TCGA-2Y-A9H8-01 17 62135324 62135324 T G ERN1 Missense_Mutation p.E412D 0.38 tolerated(0.27) benign(0.001) TCGA-2Y-A9H8-01 17 7577547 7577547 C T TP53 Missense_Mutation p.G245D 0.58 deleterious(0) probably_damaging(1) TCGA-2Y-A9H8-01 17 76993228 76993228 C T CANT1 Silent p.A159A 0.27 TCGA-2Y-A9H8-01 18 48703513 48703513 T A MEX3C Silent p.G396G 0.49 TCGA-2Y-A9H8-01 19 18870874 18870874 A T CRTC1 Missense_Mutation p.N257I 0.22 deleterious(0.01) benign(0.331) TCGA-2Y-A9H8-01 19 3759745 3759745 T G APBA3 Missense_Mutation p.E173A 0.39 deleterious(0.03) probably_damaging(0.995) TCGA-2Y-A9H8-01 19 3961436 3961436 C T DAPK3 Intron 0.17 TCGA-2Y-A9H8-01 19 46893387 46893387 G C PPP5C Missense_Mutation p.V479L 0.25 deleterious(0.01) benign(0.129) TCGA-2Y-A9H8-01 19 47960453 47960453 C T SLC8A2 Silent p.T358T 0.10 TCGA-2Y-A9H8-01 19 53431847 53431847 T A ZNF321P 3'UTR 0.16 TCGA-2Y-A9H8-01 19 806459 806459 C T PTBP1 Missense_Mutation p.S341L 0.28 tolerated(0.25) benign(0.008) TCGA-2Y-A9H8-01 19 9074291 9074291 C A MUC16 Silent p.V4385V 0.08 TCGA-2Y-A9H8-01 1 155164965 155164966 - CCCGGGC MUC1 5'Flank 0.20 TCGA-2Y-A9H8-01 1 159141439 159141439 C A CADM3 5'UTR 0.25 TCGA-2Y-A9H8-01 1 159558023 159558023 A G APCS Missense_Mutation p.Y66C 0.32 deleterious(0) probably_damaging(0.994) TCGA-2Y-A9H8-01 1 159854288 159854288 G A CCDC19 Missense_Mutation p.R279W 0.12 deleterious(0) probably_damaging(0.927) TCGA-2Y-A9H8-01 1 160321028 160321028 A G NCSTN Missense_Mutation p.N200S 0.27 deleterious(0) probably_damaging(0.996) TCGA-2Y-A9H8-01 1 190067111 190067111 C A BRINP3 3'UTR 0.36 TCGA-2Y-A9H8-01 1 200337912 200337942 CGTAAAAAGATGAAGCTCAGAGCAGGTGCAG - LINC00862 RNA 0.25 TCGA-2Y-A9H8-01 1 201868843 201868843 G A LMOD1 Missense_Mutation p.T433M 0.17 probably_damaging(0.97) TCGA-2Y-A9H8-01 1 2106687 2106687 C T PRKCZ Missense_Mutation p.R504W 0.45 deleterious(0.01) possibly_damaging(0.773) TCGA-2Y-A9H8-01 1 222791466 222791466 C G MIA3 Missense_Mutation p.P5R 0.27 deleterious_low_confidence(0.01) unknown(0) TCGA-2Y-A9H8-01 1 237167633 237167633 C T MT1HL1 Missense_Mutation p.A14T 0.19 tolerated(1) unknown(0) TCGA-2Y-A9H8-01 1 240256479 240256479 C T FMN2 Missense_Mutation p.A357V 0.16 unknown(0) TCGA-2Y-A9H8-01 1 32557607 32557607 G A TMEM39B Missense_Mutation p.V308M 0.17 deleterious(0.01) possibly_damaging(0.847) TCGA-2Y-A9H8-01 1 62579830 62579830 T G INADL Missense_Mutation p.Y1523D 0.40 tolerated(0.06) benign(0.144) TCGA-2Y-A9H8-01 1 76349304 76349304 A C MSH4 Splice_Site p.X636_splice 0.22 TCGA-2Y-A9H8-01 1 85462739 85462739 C T MCOLN2 5'Flank 0.28 TCGA-2Y-A9H8-01 1 9323715 9323737 CGGCGCAGAGCCAGTGCCTGCCC - H6PD Frame_Shift_Del p.Q390Afs*99 0.36 TCGA-2Y-A9H8-01 20 20150059 20150059 C A C20orf26 Missense_Mutation p.T447N 0.18 tolerated(0.26) benign(0.319) TCGA-2Y-A9H8-01 20 44650434 44650435 - C SLC12A5 Frame_Shift_Ins p.A13Rfs*8 0.09 TCGA-2Y-A9H8-01 20 44746957 44746957 G C CD40 5'UTR 0.39 TCGA-2Y-A9H8-01 20 48184682 48184682 G A PTGIS 5'UTR 0.28 TCGA-2Y-A9H8-01 21 43254654 43254655 - C PRDM15 Intron 0.25 TCGA-2Y-A9H8-01 2 178482808 178482808 G C TTC30A Missense_Mutation p.L208V 0.24 tolerated(0.06) possibly_damaging(0.512) TCGA-2Y-A9H8-01 2 179567285 179567285 C T TTN Nonsense_Mutation p.W10110* 0.23 TCGA-2Y-A9H8-01 2 182358128 182358128 C T ITGA4 Silent p.I410I 0.21 TCGA-2Y-A9H8-01 2 189599195 189599195 A C DIRC1 3'UTR 0.43 TCGA-2Y-A9H8-01 2 218939997 218939997 A G RUFY4 Missense_Mutation p.Y281C 0.46 tolerated(0.38) benign(0.001) TCGA-2Y-A9H8-01 2 220348089 220348089 C A SPEG Silent p.A1968A 0.50 TCGA-2Y-A9H8-01 2 241922429 241922429 C T AC104809.2 RNA 0.51 TCGA-2Y-A9H8-01 2 89459496 89459496 T C IGKV6-21 Silent p.P27P 0.36 TCGA-2Y-A9H8-01 3 100508351 100508351 C G ABI3BP Missense_Mutation p.R659T 0.28 deleterious(0) possibly_damaging(0.879) TCGA-2Y-A9H8-01 3 10168120 10168120 C T BRK1 3'UTR 0.45 TCGA-2Y-A9H8-01 3 108474658 108474658 G T RETNLB Missense_Mutation p.D101E 0.63 deleterious(0) probably_damaging(0.997) TCGA-2Y-A9H8-01 3 172428996 172428996 C G NCEH1 5'UTR 0.44 TCGA-2Y-A9H8-01 3 182756804 182756824 GATCACTCACATTGTACTGAC - MCCC1 Splice_Site p.X456_splice 0.27 TCGA-2Y-A9H8-01 3 184295691 184295691 G T EPHB3 Missense_Mutation p.G549W 0.30 tolerated(0.18) possibly_damaging(0.571) TCGA-2Y-A9H8-01 3 193120567 193120567 C A ATP13A4 Missense_Mutation p.Q1155H 0.31 deleterious(0.03) benign(0.016) TCGA-2Y-A9H8-01 3 195508118 195508118 T C MUC4 Missense_Mutation p.S3445G 0.29 benign(0.006) TCGA-2Y-A9H8-01 3 29476348 29476348 T A RBMS3 Missense_Mutation p.Y64N 0.42 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9H8-01 3 41607592 41607592 G A ULK4 Silent p.T1050T 0.26 TCGA-2Y-A9H8-01 3 52419370 52419370 G A DNAH1 Silent p.E2844E 0.53 TCGA-2Y-A9H8-01 4 113527240 113527240 G A C4orf21 Missense_Mutation p.S909F 0.31 deleterious(0) possibly_damaging(0.648) TCGA-2Y-A9H8-01 4 185940140 185940140 G A HELT Missense_Mutation p.A20T 0.64 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-2Y-A9H8-01 4 3769802 3769803 - TCCCAGAGACCCGGGGAGCTC ADRA2C 3'UTR 0.10 TCGA-2Y-A9H8-01 4 53239 53239 C T ZNF595 5'UTR 0.12 TCGA-2Y-A9H8-01 5 16711257 16711257 C A MYO10 Missense_Mutation p.R676L 0.13 deleterious(0) probably_damaging(0.997) TCGA-2Y-A9H8-01 5 70782327 70782327 T C BDP1 Silent p.F362F 0.25 TCGA-2Y-A9H8-01 6 155776002 155776002 C T NOX3 Missense_Mutation p.M66I 0.63 deleterious(0.04) possibly_damaging(0.519) TCGA-2Y-A9H8-01 6 30712143 30712143 G A IER3 Silent p.R51R 0.23 TCGA-2Y-A9H8-01 7 128492798 128492798 G A FLNC Missense_Mutation p.R1999Q 0.76 tolerated(0.09) possibly_damaging(0.482) TCGA-2Y-A9H8-01 7 24738557 24738557 T C DFNA5 3'UTR 0.53 TCGA-2Y-A9H8-01 7 27141906 27141906 G A HOXA2 Missense_Mutation p.R72C 0.05 deleterious(0) benign(0.006) TCGA-2Y-A9H8-01 7 42065983 42065983 C T GLI3 Missense_Mutation p.A353T 0.27 tolerated(1) benign(0.011) TCGA-2Y-A9H8-01 7 44153377 44153377 G A AEBP1 Silent p.G998G 0.40 TCGA-2Y-A9H8-01 7 53103524 53103524 C T POM121L12 Missense_Mutation p.P54S 0.15 tolerated(0.31) benign(0.001) TCGA-2Y-A9H8-01 7 6150812 6150812 T C USP42 Silent p.Y16Y 0.38 TCGA-2Y-A9H8-01 7 77408705 77408705 T A RSBN1L 3'UTR 0.09 TCGA-2Y-A9H8-01 7 87160674 87160674 A G ABCB1 Missense_Mutation p.V874A 0.43 tolerated(0.09) benign(0.014) TCGA-2Y-A9H8-01 8 142446127 142446127 C T PTP4A3 3'Flank 0.23 TCGA-2Y-A9H8-01 8 143956450 143956450 C T CYP11B1 Missense_Mutation p.V441M 0.04 deleterious(0.01) benign(0.066) TCGA-2Y-A9H8-01 8 1830810 1830810 C T ARHGEF10 Missense_Mutation p.L324F 0.51 deleterious(0.03) benign(0.422) TCGA-2Y-A9H8-01 8 67356983 67356983 G A ADHFE1 Missense_Mutation p.S118N 0.26 deleterious(0) benign(0.417) TCGA-2Y-A9H8-01 9 112005913 112005913 T C EPB41L4B Missense_Mutation p.H465R 0.65 tolerated(0.35) possibly_damaging(0.718) TCGA-2Y-A9H8-01 9 36400146 36400146 T C RNF38 5'UTR 0.21 TCGA-2Y-A9H8-01 X 111874635 111874635 C T LHFPL1 3'UTR 0.61 TCGA-2Y-A9H8-01 X 119077493 119077493 T C NKAP Missense_Mutation p.K26E 0.69 tolerated(0.43) possibly_damaging(0.525) TCGA-2Y-A9H8-01 X 136113301 136113301 C T GPR101 Missense_Mutation p.R178H 0.28 tolerated(0.15) benign(0.06) TCGA-2Y-A9H8-01 X 74644581 74644581 A T ZDHHC15 Silent p.L214L 0.65 TCGA-2Y-A9H8-01 X 77393577 77393577 A C TAF9B Missense_Mutation p.L51R 0.64 deleterious(0) probably_damaging(0.994) TCGA-2Y-A9H8-01 X 7811573 7811573 G A VCX Missense_Mutation p.R46H 0.18 tolerated(0.12) unknown(0) TCGA-2Y-A9H9-01 10 121571371 121571371 A C INPP5F Missense_Mutation p.E597A 0.28 tolerated(0.06) probably_damaging(0.998) TCGA-2Y-A9H9-01 10 71905794 71905794 G C TYSND1 Silent p.G183G 0.46 TCGA-2Y-A9H9-01 10 75878078 75878078 A C VCL 3'UTR 0.44 TCGA-2Y-A9H9-01 11 119059807 119059807 C T PDZD3 Silent p.L461L 0.44 TCGA-2Y-A9H9-01 11 119207240 119207240 C A RNF26 3'UTR 0.33 TCGA-2Y-A9H9-01 11 49831720 49831720 C A RP11-707M1.1 RNA 0.34 TCGA-2Y-A9H9-01 11 61097043 61097043 C A DDB1 Missense_Mutation p.R114L 0.50 deleterious(0) possibly_damaging(0.45) TCGA-2Y-A9H9-01 11 62557956 62557956 C T TMEM223 3'UTR 0.09 TCGA-2Y-A9H9-01 11 64055923 64055923 C T GPR137 Missense_Mutation p.R357W 0.08 deleterious(0) probably_damaging(0.972) TCGA-2Y-A9H9-01 11 66473243 66473243 G A SPTBN2 Silent p.H573H 0.39 TCGA-2Y-A9H9-01 11 86519158 86519158 C T PRSS23 Missense_Mutation p.T158M 0.39 deleterious(0) probably_damaging(1) TCGA-2Y-A9H9-01 11 92531256 92531256 A C FAT3 Missense_Mutation p.I1693L 0.42 benign(0.006) TCGA-2Y-A9H9-01 11 93471289 93471289 T C TAF1D Missense_Mutation p.I149V 0.39 tolerated(0.37) probably_damaging(0.943) TCGA-2Y-A9H9-01 12 10149501 10149501 G C CLEC1B Missense_Mutation p.Q128E 0.30 tolerated(0.16) benign(0.022) TCGA-2Y-A9H9-01 12 106903268 106903268 C G POLR3B Missense_Mutation p.Q1115E 0.41 deleterious(0) probably_damaging(0.986) TCGA-2Y-A9H9-01 12 11546159 11546159 C A PRB2 Nonsense_Mutation p.G285* 0.08 TCGA-2Y-A9H9-01 12 122218862 122218862 G A RHOF Silent p.I129I 0.38 TCGA-2Y-A9H9-01 12 125621327 125621327 G T AACS Missense_Mutation p.V600F 0.43 tolerated(0.07) possibly_damaging(0.563) TCGA-2Y-A9H9-01 12 133728487 133728487 C T CTD-2140B24.4 Missense_Mutation p.P85S 0.47 tolerated(0.12) benign(0) TCGA-2Y-A9H9-01 12 14927760 14927760 A G H2AFJ Missense_Mutation p.K119R 0.47 tolerated_low_confidence(0.1) benign(0.005) TCGA-2Y-A9H9-01 12 43846185 43846185 A G ADAMTS20 Silent p.Y657Y 0.38 TCGA-2Y-A9H9-01 12 44148379 44148379 C A PUS7L Missense_Mutation p.A224S 0.08 deleterious(0.04) probably_damaging(0.985) TCGA-2Y-A9H9-01 12 49427679 49427679 C T KMT2D Silent p.Q3603Q 0.05 TCGA-2Y-A9H9-01 13 101944387 101944387 T A NALCN Missense_Mutation p.Q334L 0.45 deleterious(0) possibly_damaging(0.778) TCGA-2Y-A9H9-01 13 107187266 107187266 A - EFNB2 Frame_Shift_Del p.L16* 0.31 TCGA-2Y-A9H9-01 13 25161381 25161381 C A RP11-556N21.1 RNA 0.34 TCGA-2Y-A9H9-01 14 20692318 20692318 C - OR11H6 Frame_Shift_Del p.S152Pfs*3 0.31 TCGA-2Y-A9H9-01 14 54866651 54866651 G A CDKN3 Missense_Mutation p.E17K 0.41 deleterious(0.02) possibly_damaging(0.893) TCGA-2Y-A9H9-01 15 101098994 101098994 C G RNU6-181P 3'Flank 0.51 TCGA-2Y-A9H9-01 15 23812175 23812175 T C MKRN3 Missense_Mutation p.C416R 0.40 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9H9-01 15 33025164 33025164 G A GREM1 3'UTR 0.37 TCGA-2Y-A9H9-01 15 43815343 43815343 C A MAP1A Missense_Mutation p.P558T 0.46 benign(0.005) TCGA-2Y-A9H9-01 15 50789399 50789401 ACC - USP8 In_Frame_Del p.P1005del 0.25 TCGA-2Y-A9H9-01 15 66274611 66274611 A T MEGF11 Missense_Mutation p.C204S 0.35 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9H9-01 15 67457388 67457388 G T SMAD3 Missense_Mutation p.C121F 0.35 deleterious(0) probably_damaging(0.977) TCGA-2Y-A9H9-01 15 72231259 72231259 C T MYO9A Missense_Mutation p.R771Q 0.33 deleterious(0.01) possibly_damaging(0.844) TCGA-2Y-A9H9-01 15 74468865 74468865 G - ISLR 3'UTR 0.31 TCGA-2Y-A9H9-01 15 89866069 89866069 C T POLG Missense_Mutation p.G777D 0.07 deleterious(0.02) probably_damaging(0.973) TCGA-2Y-A9H9-01 15 90168109 90168109 G A TICRR Missense_Mutation p.R1523H 0.50 tolerated(0.17) benign(0.003) TCGA-2Y-A9H9-01 15 93015518 93015518 C T C15orf32 Missense_Mutation p.A47V 0.47 tolerated_low_confidence(0.72) benign(0) TCGA-2Y-A9H9-01 16 11991733 11991750 TTGAACCTAGACAAGAGA - GSPT1 Splice_Site p.X132_splice 0.34 TCGA-2Y-A9H9-01 16 19073303 19073303 G A TMC7 3'UTR 0.32 TCGA-2Y-A9H9-01 16 20043728 20043728 A G GPR139 Missense_Mutation p.C131R 0.49 tolerated(0.07) probably_damaging(0.998) TCGA-2Y-A9H9-01 16 65026819 65026819 T C CDH11 Silent p.T214T 0.45 TCGA-2Y-A9H9-01 17 4937150 4937150 G A SLC52A1 Missense_Mutation p.R212W 0.72 tolerated(0.19) benign(0) TCGA-2Y-A9H9-01 17 60685417 60685417 C T TLK2 Nonsense_Mutation p.Q663* 0.28 TCGA-2Y-A9H9-01 17 60814012 60814012 T A MARCH10 Missense_Mutation p.K406I 0.57 deleterious(0) possibly_damaging(0.58) TCGA-2Y-A9H9-01 17 73316441 73316441 C A GRB2 3'UTR 0.61 TCGA-2Y-A9H9-01 17 74772613 74772613 A T MFSD11 Missense_Mutation p.K392M 0.58 deleterious(0) probably_damaging(0.992) TCGA-2Y-A9H9-01 17 80044945 80044945 C A FASN Missense_Mutation p.E1136D 0.29 tolerated(0.31) benign(0.002) TCGA-2Y-A9H9-01 17 8140795 8140795 T G CTC1 Silent p.L230L 0.66 TCGA-2Y-A9H9-01 18 31599308 31599308 G A NOL4 Nonsense_Mutation p.R344* 0.38 TCGA-2Y-A9H9-01 18 8777845 8777845 A G SOGA2 Silent p.R124R 0.35 TCGA-2Y-A9H9-01 19 1046943 1046943 G A ABCA7 Missense_Mutation p.A589T 0.48 tolerated(0.07) benign(0.141) TCGA-2Y-A9H9-01 19 1116910 1116910 G A SBNO2 Silent p.L574L 0.32 TCGA-2Y-A9H9-01 19 11832646 11832646 C T ZNF823 Missense_Mutation p.R568H 0.22 deleterious(0.03) possibly_damaging(0.715) TCGA-2Y-A9H9-01 19 12502454 12502454 T C ZNF799 Missense_Mutation p.Y253C 0.42 deleterious(0.03) probably_damaging(1) TCGA-2Y-A9H9-01 19 19763484 19763484 C T ATP13A1 Missense_Mutation p.V716I 0.06 deleterious(0.01) possibly_damaging(0.523) TCGA-2Y-A9H9-01 19 23543878 23543878 A G ZNF91 Missense_Mutation p.C635R 0.46 deleterious(0.01) benign(0.39) TCGA-2Y-A9H9-01 19 35758051 35758051 G T LSR Missense_Mutation p.R443L 0.46 deleterious(0.02) probably_damaging(0.963) TCGA-2Y-A9H9-01 19 35790731 35790731 C T MAG Silent p.G230G 0.14 TCGA-2Y-A9H9-01 19 40540678 40540678 G C ZNF780B Silent p.P696P 0.41 TCGA-2Y-A9H9-01 19 53057402 53057402 A G ZNF808 Silent p.Q411Q 0.50 TCGA-2Y-A9H9-01 19 54140215 54140215 T C DPRX Silent p.C183C 0.41 TCGA-2Y-A9H9-01 19 54314219 54314219 G A NLRP12 Silent p.L232L 0.24 TCGA-2Y-A9H9-01 19 55450457 55450457 T C NLRP7 Missense_Mutation p.E577G 0.22 deleterious(0) probably_damaging(0.99) TCGA-2Y-A9H9-01 1 100326816 100326816 C T AGL Intron 0.41 TCGA-2Y-A9H9-01 1 104068797 104068797 G T RNPC3 Silent p.P35P 0.44 TCGA-2Y-A9H9-01 1 150941409 150941409 C T CERS2 Missense_Mutation p.R53Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9H9-01 1 152280892 152280892 G A FLG Missense_Mutation p.S2157L 0.37 benign(0.32) TCGA-2Y-A9H9-01 1 155227414 155227414 G A SCAMP3 Silent p.A184A 0.64 TCGA-2Y-A9H9-01 1 158227517 158227517 T C CD1A 3'UTR 0.24 TCGA-2Y-A9H9-01 1 158746473 158746473 C G OR6N2 Nonstop_Mutation p.*318Sext*? 0.33 TCGA-2Y-A9H9-01 1 173469925 173469925 A G SLC9C2 3'UTR 0.62 TCGA-2Y-A9H9-01 1 203693084 203693084 T C ATP2B4 Missense_Mutation p.F1034L 0.25 tolerated(0.13) benign(0.015) TCGA-2Y-A9H9-01 1 207078217 207078217 A G FAIM3 3'UTR 0.58 TCGA-2Y-A9H9-01 1 222716922 222716922 C T HHIPL2 Missense_Mutation p.V311I 0.43 tolerated(0.13) possibly_damaging(0.755) TCGA-2Y-A9H9-01 1 22902961 22902961 A T EPHA8 Silent p.T137T 0.44 TCGA-2Y-A9H9-01 1 33246761 33246761 A C YARS Intron 0.38 TCGA-2Y-A9H9-01 20 1515074 1515074 T G SIRPD Missense_Mutation p.K197N 0.46 unknown(0) TCGA-2Y-A9H9-01 20 309078 309078 C T SOX12 3'UTR 0.04 TCGA-2Y-A9H9-01 20 44168001 44168001 A G WFDC6 Silent p.L16L 0.37 TCGA-2Y-A9H9-01 20 44168025 44168025 G A WFDC6 Missense_Mutation p.P8S 0.37 tolerated(0.86) probably_damaging(0.982) TCGA-2Y-A9H9-01 20 45131451 45131451 A C ZNF334 Missense_Mutation p.L176W 0.40 tolerated(0.18) benign(0.103) TCGA-2Y-A9H9-01 20 45315607 45315607 C G TP53RK Missense_Mutation p.D183H 0.33 deleterious(0) probably_damaging(1) TCGA-2Y-A9H9-01 20 49354431 49354431 C A PARD6B Nonsense_Mutation p.S35* 0.10 TCGA-2Y-A9H9-01 20 57766716 57766716 G T ZNF831 Silent p.L214L 0.42 TCGA-2Y-A9H9-01 20 8782816 8782816 G A PLCB1 Intron 0.47 TCGA-2Y-A9H9-01 21 32119357 32119357 G T KRTAP21-2 Missense_Mutation p.S55Y 0.38 tolerated_low_confidence(0.73) unknown(0) TCGA-2Y-A9H9-01 21 32119370 32119393 AGCCATAGCCACAGCCAGTTCCAT - KRTAP21-2 In_Frame_Del p.Y43_G50del 0.24 TCGA-2Y-A9H9-01 21 32253392 32253392 T C KRTAP11-1 Missense_Mutation p.Y151C 0.44 tolerated(0.35) probably_damaging(0.976) TCGA-2Y-A9H9-01 21 47656824 47656824 G C MCM3AP Silent p.P1901P 0.44 TCGA-2Y-A9H9-01 22 16256627 16256627 C A POTEH 3'UTR 0.07 TCGA-2Y-A9H9-01 22 16449600 16449600 G A OR11H1 Nonsense_Mutation p.R69* 0.15 TCGA-2Y-A9H9-01 22 26243585 26243585 C T MYO18B Silent p.F1247F 0.40 TCGA-2Y-A9H9-01 22 30659920 30659920 G A OSM Silent p.P237P 0.46 TCGA-2Y-A9H9-01 22 30689705 30689705 C A TBC1D10A Nonsense_Mutation p.E336* 0.47 TCGA-2Y-A9H9-01 22 50728003 50728003 G T PLXNB2 Silent p.A337A 0.05 TCGA-2Y-A9H9-01 2 101186107 101186107 T A PDCL3 Missense_Mutation p.S98T 0.43 tolerated(0.08) benign(0.16) TCGA-2Y-A9H9-01 2 105696507 105696507 A G MRPS9 Missense_Mutation p.Y159C 0.18 deleterious(0) probably_damaging(1) TCGA-2Y-A9H9-01 2 119752126 119752126 G T MARCO 3'UTR 0.31 TCGA-2Y-A9H9-01 2 158167914 158167914 C A GALNT5 3'UTR 0.07 TCGA-2Y-A9H9-01 2 167262815 167262815 C A SCN7A Missense_Mutation p.A1442S 0.42 deleterious(0) possibly_damaging(0.832) TCGA-2Y-A9H9-01 2 179424152 179424152 A C TTN Missense_Mutation p.S28903A 0.19 TCGA-2Y-A9H9-01 2 196741411 196741411 T C DNAH7 Missense_Mutation p.N1992D 0.41 tolerated(0.06) benign(0.284) TCGA-2Y-A9H9-01 2 197185161 197185161 T C HECW2 Missense_Mutation p.D296G 0.13 tolerated(0.06) benign(0.005) TCGA-2Y-A9H9-01 2 197878357 197878357 C T HNRNPA3P15 5'Flank 0.45 TCGA-2Y-A9H9-01 2 204304546 204304546 T G RAPH1 Missense_Mutation p.T1123P 0.36 unknown(0) TCGA-2Y-A9H9-01 2 207171124 207171124 A G ZDBF2 Silent p.A624A 0.40 TCGA-2Y-A9H9-01 2 20885187 20885187 T C C2orf43 3'UTR 0.25 TCGA-2Y-A9H9-01 2 26501661 26501661 G T HADHB Missense_Mutation p.A208S 0.51 tolerated(0.48) benign(0.007) TCGA-2Y-A9H9-01 2 40655983 40655983 T A SLC8A1 Missense_Mutation p.I480L 0.38 tolerated(0.08) possibly_damaging(0.819) TCGA-2Y-A9H9-01 2 48018238 48018238 A T MSH6 Nonsense_Mutation p.K145* 0.43 TCGA-2Y-A9H9-01 3 133098685 133098685 G T TMEM108 Missense_Mutation p.G44C 0.44 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-2Y-A9H9-01 3 152554941 152554941 A G P2RY1 3'UTR 0.41 TCGA-2Y-A9H9-01 3 19389280 19389280 T C KCNH8 Missense_Mutation p.F212L 0.39 tolerated(0.1) benign(0.018) TCGA-2Y-A9H9-01 3 196199175 196199175 A G RNF168 Missense_Mutation p.S411P 0.08 deleterious(0.01) benign(0.396) TCGA-2Y-A9H9-01 3 47910778 47910778 G A MAP4 Nonsense_Mutation p.R967* 0.45 TCGA-2Y-A9H9-01 3 49933256 49933256 C T MST1R Missense_Mutation p.G952R 0.15 tolerated(0.33) benign(0.018) TCGA-2Y-A9H9-01 4 143226623 143226623 A G INPP4B Missense_Mutation p.V164A 0.43 tolerated(0.91) benign(0.001) TCGA-2Y-A9H9-01 4 155412105 155412105 G A DCHS2 Missense_Mutation p.R135W 0.58 deleterious(0) possibly_damaging(0.8) TCGA-2Y-A9H9-01 4 25767058 25767058 C T SEL1L3 Splice_Site p.X949_splice 0.38 TCGA-2Y-A9H9-01 4 266039 266039 C A ZNF732 Missense_Mutation p.D203Y 0.20 deleterious(0) possibly_damaging(0.825) TCGA-2Y-A9H9-01 4 4411339 4411339 T A NSG1 Missense_Mutation p.C96S 0.41 tolerated(0.07) probably_damaging(0.998) TCGA-2Y-A9H9-01 4 56308736 56308736 A C CLOCK Silent p.T656T 0.42 TCGA-2Y-A9H9-01 4 69188594 69188594 A G YTHDC1 Missense_Mutation p.F492L 0.45 tolerated(0.12) probably_damaging(0.999) TCGA-2Y-A9H9-01 5 101627074 101627074 C A SLCO4C1 Nonsense_Mutation p.E198* 0.06 TCGA-2Y-A9H9-01 5 102442596 102442596 C A GIN1 Missense_Mutation p.V53F 0.41 deleterious(0) benign(0.284) TCGA-2Y-A9H9-01 5 137241951 137241951 C A PKD2L2 Missense_Mutation p.S268Y 0.45 deleterious(0) probably_damaging(1) TCGA-2Y-A9H9-01 5 140214261 140214261 G A PCDHA7 Missense_Mutation p.R98Q 0.08 tolerated_low_confidence(0.18) benign(0.103) TCGA-2Y-A9H9-01 5 140228373 140228373 G A PCDHA9 Missense_Mutation p.R98Q 0.13 tolerated_low_confidence(0.13) benign(0.076) TCGA-2Y-A9H9-01 5 141335204 141335204 G T PCDH12 Missense_Mutation p.S738Y 0.37 deleterious(0) possibly_damaging(0.747) TCGA-2Y-A9H9-01 5 150945848 150945848 T C FAT2 Missense_Mutation p.D882G 0.48 probably_damaging(1) TCGA-2Y-A9H9-01 5 170738765 170738765 G A TLX3 3'UTR 0.50 TCGA-2Y-A9H9-01 5 45695977 45695977 G A HCN1 Silent p.G73G 0.31 TCGA-2Y-A9H9-01 5 52229759 52229759 A G ITGA1 Missense_Mutation p.N966S 0.37 tolerated(0.07) benign(0.403) TCGA-2Y-A9H9-01 5 60817126 60817126 G A ZSWIM6 Missense_Mutation p.C457Y 0.45 tolerated(0.05) benign(0.105) TCGA-2Y-A9H9-01 6 117116996 117116996 T C GPRC6A Silent p.Q517Q 0.53 TCGA-2Y-A9H9-01 6 126210902 126210902 G T NCOA7 Missense_Mutation p.G568C 0.26 deleterious(0.03) benign(0.008) TCGA-2Y-A9H9-01 6 143818489 143818489 C A FUCA2 Intron 0.13 TCGA-2Y-A9H9-01 6 157100005 157100005 C A ARID1B Silent p.G314G 0.08 TCGA-2Y-A9H9-01 6 165829741 165829741 G T PDE10A Missense_Mutation p.Q343K 0.43 tolerated(0.11) benign(0.122) TCGA-2Y-A9H9-01 6 168708969 168708969 C A DACT2 Missense_Mutation p.G490C 0.10 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9H9-01 6 24403393 24403393 G T MRS2 Missense_Mutation p.G40V 0.30 deleterious_low_confidence(0.02) benign(0.004) TCGA-2Y-A9H9-01 6 24651152 24651152 A T TDP2 Missense_Mutation p.I318K 0.64 deleterious(0) benign(0.049) TCGA-2Y-A9H9-01 6 25917052 25917052 A T SLC17A2 Missense_Mutation p.V264D 0.45 deleterious(0) possibly_damaging(0.782) TCGA-2Y-A9H9-01 6 26247145 26247145 T C HIST1H4G Missense_Mutation p.K21E 0.45 deleterious(0) probably_damaging(0.928) TCGA-2Y-A9H9-01 6 30587275 30587275 C T MRPS18B Silent p.P28P 0.41 TCGA-2Y-A9H9-01 6 33424037 33424038 TG - ZBTB9 Frame_Shift_Del p.C388Wfs*11 0.26 TCGA-2Y-A9H9-01 6 35888863 35888863 G A SRPK1 5'UTR 0.14 TCGA-2Y-A9H9-01 6 56918738 56918738 G C KIAA1586 Missense_Mutation p.G481R 0.42 deleterious(0.02) probably_damaging(0.999) TCGA-2Y-A9H9-01 6 7378874 7378874 G A CAGE1 Silent p.S221S 0.45 TCGA-2Y-A9H9-01 6 90410473 90410473 C G MDN1 Missense_Mutation p.D2844H 0.39 benign(0.043) TCGA-2Y-A9H9-01 7 100276523 100276523 C T GNB2 3'UTR 0.28 TCGA-2Y-A9H9-01 7 100854943 100854943 C A PLOD3 Missense_Mutation p.W429C 0.60 deleterious(0) probably_damaging(0.986) TCGA-2Y-A9H9-01 7 107384608 107384608 C G CBLL1 5'UTR 0.41 TCGA-2Y-A9H9-01 7 122342140 122342140 G T RNF148 Missense_Mutation p.T222N 0.23 tolerated(0.56) benign(0.116) TCGA-2Y-A9H9-01 7 149463194 149463194 C T ZNF467 Missense_Mutation p.A133T 0.07 tolerated(0.52) benign(0.011) TCGA-2Y-A9H9-01 7 2473761 2473761 T C CHST12 3'UTR 0.35 TCGA-2Y-A9H9-01 7 42949271 42949271 G C C7orf25 Missense_Mutation p.P468R 0.36 tolerated(0.13) possibly_damaging(0.799) TCGA-2Y-A9H9-01 7 80378240 80378240 G A SEMA3C Nonsense_Mutation p.Q606* 0.50 TCGA-2Y-A9H9-01 8 113301671 113301671 T C CSMD3 Missense_Mutation p.K3024R 0.39 tolerated(0.41) benign(0.002) TCGA-2Y-A9H9-01 8 143546087 143546087 G - BAI1 Frame_Shift_Del p.N178Tfs*59 0.24 TCGA-2Y-A9H9-01 8 144809419 144809419 G T FAM83H Missense_Mutation p.L738M 0.02 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9H9-01 8 24201031 24201031 G T ADAM28 Nonsense_Mutation p.E642* 0.74 TCGA-2Y-A9H9-01 8 32616839 32616839 A C NRG1 Missense_Mutation p.N321H 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-2Y-A9H9-01 8 57025864 57025864 C A MOS Missense_Mutation p.L226F 0.46 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9H9-01 8 64100105 64100105 C T YTHDF3 Silent p.P511P 0.46 TCGA-2Y-A9H9-01 8 71037078 71037078 T C NCOA2 Silent p.P1313P 0.65 TCGA-2Y-A9H9-01 8 88885352 88885352 T A DCAF4L2 Missense_Mutation p.Q283L 0.34 deleterious(0.01) benign(0.219) TCGA-2Y-A9H9-01 9 105767525 105767525 A T CYLC2 Silent p.T204T 0.73 TCGA-2Y-A9H9-01 9 125007619 125007619 C A RBM18 Missense_Mutation p.R110I 0.60 deleterious(0.04) benign(0.096) TCGA-2Y-A9H9-01 9 127089633 127089633 C T NEK6 Silent p.N211N 0.84 TCGA-2Y-A9H9-01 9 17394651 17394651 A G CNTLN Silent p.Q733Q 0.41 TCGA-2Y-A9H9-01 9 3247720 3247720 T A RFX3 Intron 0.41 TCGA-2Y-A9H9-01 9 35811469 35811469 G A SPAG8 Missense_Mutation p.H192Y 0.45 tolerated_low_confidence(0.1) unknown(0) TCGA-2Y-A9H9-01 9 40774395 40774395 T C ZNF658 Missense_Mutation p.M294V 0.75 tolerated(0.51) benign(0) TCGA-2Y-A9H9-01 9 79324435 79324435 A G PRUNE2 Missense_Mutation p.W919R 0.24 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9H9-01 X 107869539 107869539 G T COL4A5 Missense_Mutation p.G1069V 0.22 unknown(0) TCGA-2Y-A9H9-01 X 118975169 118975172 TTTC - UPF3B Frame_Shift_Del p.R225Kfs*22 0.81 TCGA-2Y-A9H9-01 X 120009029 120009029 G T CT47B1 Missense_Mutation p.P166T 0.82 tolerated(0.08) possibly_damaging(0.482) TCGA-2Y-A9H9-01 X 125299403 125299403 C T DCAF12L2 Missense_Mutation p.E169K 0.80 tolerated(0.14) benign(0.093) TCGA-2Y-A9H9-01 X 135631014 135631014 C G VGLL1 Missense_Mutation p.P161A 0.08 deleterious(0.02) possibly_damaging(0.577) TCGA-2Y-A9H9-01 X 141290940 141290940 C A MAGEC2 Missense_Mutation p.W278C 0.51 deleterious(0) probably_damaging(0.988) TCGA-2Y-A9H9-01 X 154194337 154194337 T C F8 Missense_Mutation p.T451A 0.87 deleterious(0.04) possibly_damaging(0.803) TCGA-2Y-A9H9-01 X 34148402 34148402 T A FAM47A Missense_Mutation p.E665V 0.85 deleterious(0.01) probably_damaging(0.978) TCGA-2Y-A9HA-01 10 120070724 120070724 T C FAM204A Silent p.A215A 0.46 TCGA-2Y-A9HA-01 10 127824210 127824210 C T ADAM12 Missense_Mutation p.G123E 0.60 deleterious(0) probably_damaging(1) TCGA-2Y-A9HA-01 10 17279345 17279345 T A VIM 3'UTR 0.31 TCGA-2Y-A9HA-01 10 21962452 21962452 G - MLLT10 Frame_Shift_Del p.V411* 0.27 TCGA-2Y-A9HA-01 10 25284594 25284594 G - ENKUR Frame_Shift_Del p.P143Qfs*23 0.28 TCGA-2Y-A9HA-01 10 445075 445075 G A DIP2C Missense_Mutation p.P412S 0.36 tolerated(0.08) probably_damaging(0.992) TCGA-2Y-A9HA-01 10 45954609 45954609 A G MARCH8 Missense_Mutation p.I177T 0.27 deleterious(0) probably_damaging(0.96) TCGA-2Y-A9HA-01 10 5948067 5948067 G T FBXO18 Missense_Mutation p.M126I 0.51 tolerated(0.46) benign(0.39) TCGA-2Y-A9HA-01 10 75552318 75552318 A G ZSWIM8 Missense_Mutation p.Y674C 0.19 tolerated_low_confidence(0.17) benign(0.007) TCGA-2Y-A9HA-01 10 96480254 96480254 A G CYP2C18 Silent p.R307R 0.55 TCGA-2Y-A9HA-01 10 99219913 99219913 G T MMS19 Missense_Mutation p.T849N 0.04 tolerated(0.08) benign(0.017) TCGA-2Y-A9HA-01 11 100998846 100998846 C T PGR Missense_Mutation p.R319H 0.10 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9HA-01 11 118498741 118498741 G A PHLDB1 Missense_Mutation p.R401H 0.28 deleterious(0) probably_damaging(0.931) TCGA-2Y-A9HA-01 11 12316272 12316272 C T MICALCL Silent p.L432L 0.07 TCGA-2Y-A9HA-01 11 124189242 124189242 C T OR8D2 Missense_Mutation p.M284I 0.31 deleterious(0.01) benign(0.002) TCGA-2Y-A9HA-01 11 124767648 124767660 AGGGAACCCCTGC T ROBO4 In_Frame_Del p.G11_L15delinsE 0.26 TCGA-2Y-A9HA-01 11 124767659 124767660 GC - ROBO4 Frame_Shift_Del p.G11Efs*74 0.21 TCGA-2Y-A9HA-01 11 131781288 131781288 C A NTM 5'Flank 0.38 TCGA-2Y-A9HA-01 11 15134030 15134030 T C INSC Silent p.P5P 0.07 TCGA-2Y-A9HA-01 11 18636742 18636742 T C SPTY2D1 Missense_Mutation p.H360R 0.29 tolerated(0.19) benign(0.227) TCGA-2Y-A9HA-01 11 26563568 26563568 G T ANO3 Missense_Mutation p.W369C 0.28 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9HA-01 11 56143353 56143353 T C OR8U1 Missense_Mutation p.F85S 0.31 deleterious(0.02) probably_damaging(0.991) TCGA-2Y-A9HA-01 11 56230205 56230205 G A OR5M9 Missense_Mutation p.R225C 0.35 deleterious(0.03) benign(0.103) TCGA-2Y-A9HA-01 11 57070061 57070061 C T TNKS1BP1 Missense_Mutation p.E1519K 0.32 deleterious(0.01) possibly_damaging(0.536) TCGA-2Y-A9HA-01 11 61537823 61537823 C T MYRF Missense_Mutation p.P189L 0.39 tolerated(0.1) probably_damaging(0.979) TCGA-2Y-A9HA-01 11 72069922 72069922 A G CLPB Splice_Site p.X289_splice 0.19 TCGA-2Y-A9HA-01 11 84996278 84996278 G A DLG2 Nonsense_Mutation p.Q58* 0.34 TCGA-2Y-A9HA-01 11 8752073 8752073 C T ST5 Missense_Mutation p.R255Q 0.38 tolerated(0.11) probably_damaging(0.992) TCGA-2Y-A9HA-01 11 92495069 92495069 G T FAT3 Missense_Mutation p.W1239C 0.36 probably_damaging(0.995) TCGA-2Y-A9HA-01 11 9496154 9496154 C A ZNF143 Missense_Mutation p.T116K 0.33 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9HA-01 12 113825646 113825646 C T PLBD2 Missense_Mutation p.P513S 0.45 deleterious(0.01) possibly_damaging(0.533) TCGA-2Y-A9HA-01 12 118599689 118599689 C A TAOK3 Silent p.T681T 0.32 TCGA-2Y-A9HA-01 12 32137127 32137127 A G KIAA1551 Missense_Mutation p.T1080A 0.30 tolerated(0.12) benign(0.032) TCGA-2Y-A9HA-01 12 4829825 4829825 G C GALNT8 5'UTR 0.41 TCGA-2Y-A9HA-01 12 4919737 4919737 C G KCNA6 Missense_Mutation p.A177G 0.34 deleterious(0.01) probably_damaging(0.993) TCGA-2Y-A9HA-01 12 51489814 51489814 T C TFCP2 Missense_Mutation p.N477D 0.37 deleterious(0) probably_damaging(0.937) TCGA-2Y-A9HA-01 12 9085350 9085350 C A PHC1 Missense_Mutation p.Q433K 0.14 tolerated_low_confidence(0.18) unknown(0) TCGA-2Y-A9HA-01 13 101315425 101315425 G C TMTC4 Nonsense_Mutation p.Y115* 0.04 TCGA-2Y-A9HA-01 13 106142480 106142480 T A DAOA 3'UTR 0.44 TCGA-2Y-A9HA-01 13 61103006 61103006 G C TDRD3 Missense_Mutation p.R549S 0.13 deleterious(0.03) benign(0.126) TCGA-2Y-A9HA-01 13 79233262 79233262 G A RNF219 5'UTR 0.41 TCGA-2Y-A9HA-01 14 20692717 20692717 G A OR11H6 Silent p.G283G 0.38 TCGA-2Y-A9HA-01 14 21992917 21992917 G T SALL2 Silent p.A315A 0.35 TCGA-2Y-A9HA-01 14 38723785 38723785 C A CLEC14A Silent p.A481A 0.38 TCGA-2Y-A9HA-01 14 55511489 55511489 T C SOCS4 3'UTR 0.38 TCGA-2Y-A9HA-01 14 92625383 92625414 TGAATTAGCTTGGATAGATGGTGTCTTAGATA - CPSF2 Frame_Shift_Del p.L628Sfs*18 0.24 TCGA-2Y-A9HA-01 14 94173087 94173087 T A UNC79 Missense_Mutation p.I2405N 0.43 deleterious(0) probably_damaging(0.996) TCGA-2Y-A9HA-01 14 96953300 96953300 G A AK7 Silent p.L680L 0.32 TCGA-2Y-A9HA-01 15 33024018 33024018 A T GREM1 3'UTR 0.31 TCGA-2Y-A9HA-01 15 33961610 33961610 T C RYR3 Missense_Mutation p.I1892T 0.34 benign(0.205) TCGA-2Y-A9HA-01 15 34640395 34640395 G A NUTM1 Missense_Mutation p.S81N 0.36 tolerated(0.17) benign(0.104) TCGA-2Y-A9HA-01 15 44705651 44705664 TCATTCTACTTTGT - CASC4 3'UTR 0.37 TCGA-2Y-A9HA-01 15 50595257 50595257 G T GABPB1 Missense_Mutation p.H114N 0.40 tolerated(0.06) benign(0.111) TCGA-2Y-A9HA-01 15 55647664 55647664 A C PIGB 3'UTR 0.33 TCGA-2Y-A9HA-01 15 68628127 68628127 C T ITGA11 Missense_Mutation p.A445T 0.42 deleterious(0) probably_damaging(0.946) TCGA-2Y-A9HA-01 15 74922375 74922375 G A CLK3 3'UTR 0.28 TCGA-2Y-A9HA-01 15 92459362 92459362 G T SLCO3A1 Missense_Mutation p.R107L 0.38 tolerated(0.27) probably_damaging(0.999) TCGA-2Y-A9HA-01 16 1398634 1398634 C T BAIAP3 3'UTR 0.50 TCGA-2Y-A9HA-01 16 1841152 1841152 C G IGFALS Missense_Mutation p.V461L 0.44 deleterious(0.04) benign(0.112) TCGA-2Y-A9HA-01 16 29755994 29755994 C T C16orf54 Silent p.E93E 0.46 TCGA-2Y-A9HA-01 16 4780104 4780104 C T ANKS3 Missense_Mutation p.R16H 0.40 tolerated(0.13) benign(0.004) TCGA-2Y-A9HA-01 16 69724937 69724937 A C NFAT5 Missense_Mutation p.E623D 0.59 benign(0.289) TCGA-2Y-A9HA-01 16 778845 778845 A G HAGHL Missense_Mutation p.K184E 0.39 tolerated(0.17) benign(0.039) TCGA-2Y-A9HA-01 16 89246636 89246636 G T CDH15 Missense_Mutation p.S77I 0.59 tolerated(0.12) possibly_damaging(0.847) TCGA-2Y-A9HA-01 17 38548857 38548857 G T TOP2A Missense_Mutation p.T1315K 0.38 tolerated(1) benign(0) TCGA-2Y-A9HA-01 17 40854591 40854591 G A EZH1 Missense_Mutation p.L735F 0.11 deleterious(0) probably_damaging(0.991) TCGA-2Y-A9HA-01 17 46607721 46607721 C G HOXB1 Missense_Mutation p.W182C 0.36 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9HA-01 17 4736747 4736747 C A MINK1 5'UTR 0.67 TCGA-2Y-A9HA-01 17 56082880 56082880 G T SRSF1 Missense_Mutation p.R212S 0.43 tolerated(0.34) unknown(0) TCGA-2Y-A9HA-01 17 62049209 62049209 A G SCN4A Missense_Mutation p.Y162H 0.35 tolerated(0.05) possibly_damaging(0.762) TCGA-2Y-A9HA-01 17 62506387 62506387 C G CEP95 Missense_Mutation p.S82C 0.36 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9HA-01 17 7192860 7192860 C T YBX2 Missense_Mutation p.A345T 0.11 tolerated_low_confidence(1) possibly_damaging(0.499) TCGA-2Y-A9HA-01 17 7577572 7577572 T - TP53 Frame_Shift_Del p.M237Cfs*10 0.34 TCGA-2Y-A9HA-01 17 80332945 80332945 G C UTS2R Missense_Mutation p.A249P 0.53 tolerated(0.2) benign(0.012) TCGA-2Y-A9HA-01 18 2920307 2920307 A T LPIN2 Missense_Mutation p.L892Q 0.34 tolerated(0.13) benign(0.418) TCGA-2Y-A9HA-01 18 49867089 49867089 T C DCC 5'UTR 0.47 TCGA-2Y-A9HA-01 18 50734122 50734122 T A DCC Nonsense_Mutation p.L599* 0.15 TCGA-2Y-A9HA-01 18 52604189 52604189 G T CCDC68 Missense_Mutation p.L116M 0.42 deleterious(0.05) probably_damaging(0.957) TCGA-2Y-A9HA-01 18 7026082 7026082 G T LAMA1 Silent p.G766G 0.32 TCGA-2Y-A9HA-01 18 74672680 74672680 A G ZNF236 Missense_Mutation p.Q1761R 0.35 deleterious(0) possibly_damaging(0.794) TCGA-2Y-A9HA-01 18 9102737 9102737 C T NDUFV2 5'UTR 0.28 TCGA-2Y-A9HA-01 19 11039342 11039342 C A YIPF2 5'Flank 0.56 TCGA-2Y-A9HA-01 19 22940974 22940974 A T ZNF99 Missense_Mutation p.H579Q 0.35 tolerated(0.54) benign(0.055) TCGA-2Y-A9HA-01 19 42498290 42498290 G A ATP1A3 5'UTR 0.48 TCGA-2Y-A9HA-01 19 45452515 45452515 C - APOC2 3'UTR 0.29 TCGA-2Y-A9HA-01 19 48598746 48598746 A C PLA2G4C Silent p.P238P 0.22 TCGA-2Y-A9HA-01 19 48598748 48598748 G A PLA2G4C Missense_Mutation p.P238S 0.22 tolerated(0.08) possibly_damaging(0.461) TCGA-2Y-A9HA-01 19 51363563 51363563 C A KLK3 3'UTR 0.41 TCGA-2Y-A9HA-01 19 51525635 51525635 T C KLK11 3'UTR 0.31 TCGA-2Y-A9HA-01 19 52196147 52196147 G T SPACA6P-AS RNA 0.39 TCGA-2Y-A9HA-01 1 103491838 103491838 C A COL11A1 Missense_Mutation p.E277D 0.31 benign(0.034) TCGA-2Y-A9HA-01 1 114225757 114225757 A C MAGI3 Missense_Mutation p.K1189N 0.37 tolerated_low_confidence(0.05) benign(0.009) TCGA-2Y-A9HA-01 1 116609777 116609777 C T SLC22A15 3'UTR 0.43 TCGA-2Y-A9HA-01 1 11708544 11708544 C G FBXO2 3'UTR 0.25 TCGA-2Y-A9HA-01 1 161953741 161953741 C A OLFML2B Missense_Mutation p.Q659H 0.43 tolerated(0.1) benign(0.032) TCGA-2Y-A9HA-01 1 170135847 170135847 C - METTL11B Frame_Shift_Del p.F181Sfs*16 0.40 TCGA-2Y-A9HA-01 1 175365900 175365900 C G TNR Missense_Mutation p.R340S 0.66 tolerated(0.41) benign(0.014) TCGA-2Y-A9HA-01 1 179631330 179631330 T C TDRD5 Missense_Mutation p.M805T 0.31 tolerated(0.32) benign(0.015) TCGA-2Y-A9HA-01 1 186050420 186050420 G A HMCN1 Missense_Mutation p.C2894Y 0.60 probably_damaging(0.998) TCGA-2Y-A9HA-01 1 192335370 192335370 A G RGS21 3'UTR 0.10 TCGA-2Y-A9HA-01 1 213068556 213068556 A G FLVCR1 Splice_Site p.X532_splice 0.27 TCGA-2Y-A9HA-01 1 229631723 229631723 C T NUP133 Nonsense_Mutation p.W297* 0.55 TCGA-2Y-A9HA-01 1 237753133 237753133 T A RYR2 Silent p.G1213G 0.33 TCGA-2Y-A9HA-01 1 27023908 27023908 G A ARID1A Silent p.G338G 0.44 TCGA-2Y-A9HA-01 1 27339186 27339186 G T FAM46B 5'UTR 0.20 TCGA-2Y-A9HA-01 1 34089022 34089022 C T CSMD2 Silent p.L1850L 0.35 TCGA-2Y-A9HA-01 1 41618413 41618413 G A SCMH1 Intron 0.33 TCGA-2Y-A9HA-01 1 52303276 52303276 A C NRD1 Missense_Mutation p.F216C 0.35 tolerated_low_confidence(0.23) benign(0.068) TCGA-2Y-A9HA-01 1 53459169 53459169 T C SCP2 Intron 0.39 TCGA-2Y-A9HA-01 1 67371059 67371059 C T WDR78 Splice_Site p.X57_splice 0.41 TCGA-2Y-A9HA-01 20 3730781 3730781 C T HSPA12B Missense_Mutation p.A403V 0.35 tolerated(0.13) benign(0.009) TCGA-2Y-A9HA-01 20 391373 391373 T A RBCK1 Intron 0.53 TCGA-2Y-A9HA-01 20 41306596 41306596 C A PTPRT Nonsense_Mutation p.E355* 0.39 TCGA-2Y-A9HA-01 20 43926651 43926651 C A MATN4 Missense_Mutation p.A496S 0.40 probably_damaging(1) TCGA-2Y-A9HA-01 20 58514513 58514513 A G PPP1R3D Silent p.D158D 0.19 TCGA-2Y-A9HA-01 20 60890252 60890252 T G LAMA5 Missense_Mutation p.K2627Q 0.32 probably_damaging(0.999) TCGA-2Y-A9HA-01 21 34697310 34697310 G A IFNAR1 5'UTR 0.40 TCGA-2Y-A9HA-01 21 41385098 41385098 C T DSCAM Missense_Mutation p.V1968M 0.46 deleterious_low_confidence(0.01) benign(0.013) TCGA-2Y-A9HA-01 21 45545890 45545890 A T PWP2 Splice_Site p.X656_splice 0.38 TCGA-2Y-A9HA-01 21 47734854 47734854 C A C21orf58 Intron 0.33 TCGA-2Y-A9HA-01 22 50656996 50656996 G A TUBGCP6 Silent p.S1625S 0.39 TCGA-2Y-A9HA-01 2 103013497 103013497 G A IL18R1 3'UTR 0.27 TCGA-2Y-A9HA-01 2 163291972 163291972 G T KCNH7 Missense_Mutation p.H564N 0.40 deleterious(0) probably_damaging(0.995) TCGA-2Y-A9HA-01 2 163291973 163291973 A T KCNH7 Silent p.A563A 0.40 TCGA-2Y-A9HA-01 2 178562092 178562092 T G PDE11A Silent p.S771S 0.44 TCGA-2Y-A9HA-01 2 191067411 191067411 G A C2orf88 3'UTR 0.37 TCGA-2Y-A9HA-01 2 196709853 196709853 T C DNAH7 Missense_Mutation p.R2940G 0.35 tolerated(0.13) benign(0) TCGA-2Y-A9HA-01 2 203630440 203630440 G A FAM117B Missense_Mutation p.A575T 0.42 tolerated_low_confidence(0.49) unknown(0) TCGA-2Y-A9HA-01 2 220427162 220427162 A G OBSL1 Missense_Mutation p.I972T 0.37 tolerated(0.29) benign(0.305) TCGA-2Y-A9HA-01 2 225244883 225244883 C A FAM124B Nonsense_Mutation p.G259* 0.35 TCGA-2Y-A9HA-01 2 234681067 234681087 CTTGGACGTGATTGGTTTCCT - UGT1A4 In_Frame_Del p.D491_L497del 0.09 TCGA-2Y-A9HA-01 2 25469632 25469632 C T DNMT3A Missense_Mutation p.R379H 0.10 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9HA-01 2 25497874 25497874 G T DNMT3A Missense_Mutation p.A192E 0.34 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9HA-01 2 29293951 29293951 A C C2orf71 Silent p.P1059P 0.30 TCGA-2Y-A9HA-01 2 56103824 56103824 G A EFEMP1 Missense_Mutation p.L272F 0.36 tolerated(0.13) benign(0.287) TCGA-2Y-A9HA-01 2 85604561 85604561 G A ELMOD3 Silent p.A234A 0.22 TCGA-2Y-A9HA-01 2 86849812 86849812 C T RNF103-CHMP3 Intron 0.46 TCGA-2Y-A9HA-01 2 89266227 89266227 C T IGKV1-6 Missense_Mutation p.G11R 0.37 tolerated(0.07) probably_damaging(0.945) TCGA-2Y-A9HA-01 3 107798844 107798844 G A CD47 Missense_Mutation p.R132C 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-2Y-A9HA-01 3 113377134 113377134 A G KIAA2018 Missense_Mutation p.I1132T 0.31 probably_damaging(0.997) TCGA-2Y-A9HA-01 3 122437678 122437678 G C PARP14 Missense_Mutation p.R1560S 0.04 deleterious(0.01) possibly_damaging(0.589) TCGA-2Y-A9HA-01 3 133483097 133483120 TGTCTTGGCAGAAAACTACAATAG - TF Splice_Site p.X426_splice 0.26 TCGA-2Y-A9HA-01 3 140123535 140123535 C A CLSTN2 Nonsense_Mutation p.C188* 0.41 TCGA-2Y-A9HA-01 3 164727106 164727106 G T SI Missense_Mutation p.D1380E 0.38 tolerated(1) benign(0.26) TCGA-2Y-A9HA-01 3 172241126 172241126 C T TNFSF10 Missense_Mutation p.V17M 0.34 tolerated(0.23) benign(0.046) TCGA-2Y-A9HA-01 3 186333556 186333556 G T AHSG Missense_Mutation p.R99I 0.27 deleterious(0) benign(0.047) TCGA-2Y-A9HA-01 3 195474091 195474091 C T MUC4 Missense_Mutation p.A5399T 0.22 benign(0.002) TCGA-2Y-A9HA-01 3 19575724 19575724 A T KCNH8 3'UTR 0.48 TCGA-2Y-A9HA-01 3 37476365 37476365 G T C3orf35 Missense_Mutation p.G86V 0.43 deleterious_low_confidence(0) possibly_damaging(0.537) TCGA-2Y-A9HA-01 3 39433406 39433406 G T SLC25A38 Silent p.G173G 0.43 TCGA-2Y-A9HA-01 3 41266125 41266125 C T CTNNB1 Missense_Mutation p.T41I 0.40 deleterious(0) probably_damaging(0.931) TCGA-2Y-A9HA-01 3 44437983 44437983 G T TCAIM Missense_Mutation p.A263S 0.34 deleterious(0.03) benign(0.371) TCGA-2Y-A9HA-01 3 47957487 47957487 C A MAP4 Silent p.L610L 0.39 TCGA-2Y-A9HA-01 3 52283465 52283465 G T PPM1M Intron 0.58 TCGA-2Y-A9HA-01 3 58410845 58410845 T G PXK 3'UTR 0.42 TCGA-2Y-A9HA-01 3 58410862 58410862 T G PXK 3'UTR 0.53 TCGA-2Y-A9HA-01 3 63965668 63965668 T C ATXN7 Missense_Mutation p.S193P 0.30 tolerated(0.13) benign(0.059) TCGA-2Y-A9HA-01 4 110772897 110772897 T A LRIT3 Silent p.A118A 0.09 TCGA-2Y-A9HA-01 4 190878614 190878614 T C FRG1 Missense_Mutation p.I165T 0.11 deleterious(0.02) probably_damaging(0.958) TCGA-2Y-A9HA-01 4 5630306 5630306 G C EVC2 Missense_Mutation p.H622Q 0.28 tolerated(0.43) benign(0.011) TCGA-2Y-A9HA-01 4 62903534 62903534 C A LPHN3 Missense_Mutation p.S1158Y 0.06 deleterious(0) probably_damaging(0.934) TCGA-2Y-A9HA-01 4 72423536 72423536 G T SLC4A4 Missense_Mutation p.Q957H 0.39 deleterious(0) probably_damaging(0.996) TCGA-2Y-A9HA-01 4 94145811 94145811 C A GRID2 Missense_Mutation p.A337D 0.38 deleterious(0) probably_damaging(0.968) TCGA-2Y-A9HA-01 5 121759396 121759396 A C SNCAIP Missense_Mutation p.I322L 0.27 deleterious(0.04) benign(0.053) TCGA-2Y-A9HA-01 5 137843923 137843923 C A ETF1 3'UTR 0.48 TCGA-2Y-A9HA-01 5 140432309 140432309 T C PCDHB1 Silent p.Y418Y 0.35 TCGA-2Y-A9HA-01 5 147505382 147505382 A G SPINK5 Missense_Mutation p.T976A 0.48 tolerated(0.29) benign(0.037) TCGA-2Y-A9HA-01 5 151771871 151771871 C G NMUR2 Missense_Mutation p.D377H 0.45 tolerated(0.06) benign(0.413) TCGA-2Y-A9HA-01 5 156479645 156479645 T C HAVCR1 Missense_Mutation p.I134V 0.37 tolerated(0.51) unknown(0) TCGA-2Y-A9HA-01 5 161324165 161324165 C A GABRA1 Missense_Mutation p.P370T 0.49 tolerated(0.82) benign(0) TCGA-2Y-A9HA-01 5 161324166 161324166 C A GABRA1 Missense_Mutation p.P370Q 0.48 tolerated(0.59) benign(0.031) TCGA-2Y-A9HA-01 5 178310514 178310514 A G ZNF354B Missense_Mutation p.Y354C 0.44 deleterious(0) benign(0.398) TCGA-2Y-A9HA-01 5 3601148 3601148 C A IRX1 Silent p.S479S 0.25 TCGA-2Y-A9HA-01 5 57913469 57913469 G A RAB3C Splice_Site p.X9_splice 0.44 TCGA-2Y-A9HA-01 6 109867191 109867191 T A AK9 Missense_Mutation p.E1035V 0.47 deleterious(0.03) possibly_damaging(0.719) TCGA-2Y-A9HA-01 6 117050772 117050772 A T KPNA5 Missense_Mutation p.T434S 0.54 tolerated(0.5) possibly_damaging(0.497) TCGA-2Y-A9HA-01 6 117113979 117113979 T C GPRC6A Missense_Mutation p.R703G 0.52 deleterious(0) benign(0.04) TCGA-2Y-A9HA-01 6 129905182 129905182 C T ARHGAP18 Missense_Mutation p.E597K 0.68 tolerated(0.24) benign(0.218) TCGA-2Y-A9HA-01 6 157100005 157100005 C A ARID1B Silent p.G314G 0.06 TCGA-2Y-A9HA-01 6 32166815 32166815 G A NOTCH4 Missense_Mutation p.R1475C 0.38 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9HA-01 6 3751739 3751739 C A PXDC1 Silent p.T9T 0.40 TCGA-2Y-A9HA-01 6 42713787 42713787 C A TBCC Missense_Mutation p.A9S 0.23 tolerated_low_confidence(0.16) benign(0.115) TCGA-2Y-A9HA-01 6 44218166 44218166 A G HSP90AB1 Missense_Mutation p.K263E 0.33 tolerated(0.48) benign(0.001) TCGA-2Y-A9HA-01 6 44355388 44355388 A C CDC5L 5'UTR 0.50 TCGA-2Y-A9HA-01 6 46656123 46656123 G T TDRD6 Silent p.V86V 0.39 TCGA-2Y-A9HA-01 6 49936539 49936539 C A DEFB113 Nonsense_Mutation p.E34* 0.39 TCGA-2Y-A9HA-01 6 7845445 7845445 C T BMP6 Missense_Mutation p.P246L 0.04 deleterious(0) probably_damaging(1) TCGA-2Y-A9HA-01 6 8090503 8090503 T C EEF1E1 Silent p.S100S 0.42 TCGA-2Y-A9HA-01 7 100780814 100780814 T C SERPINE1 3'UTR 0.42 TCGA-2Y-A9HA-01 7 103363632 103363632 T C RELN Missense_Mutation p.T254A 0.31 tolerated(0.28) benign(0) TCGA-2Y-A9HA-01 7 106822886 106822886 G A HBP1 Missense_Mutation p.D80N 0.10 tolerated_low_confidence(0.11) benign(0.003) TCGA-2Y-A9HA-01 7 134849182 134849182 A G TMEM140 5'UTR 0.43 TCGA-2Y-A9HA-01 7 143080168 143080168 C A ZYX Missense_Mutation p.S259Y 0.56 tolerated(1) possibly_damaging(0.496) TCGA-2Y-A9HA-01 7 150417283 150417283 G A GIMAP1 Missense_Mutation p.R64K 0.11 tolerated(0.7) benign(0.163) TCGA-2Y-A9HA-01 7 1997344 1997344 C T MAD1L1 Missense_Mutation p.E506K 0.41 deleterious(0.01) probably_damaging(0.992) TCGA-2Y-A9HA-01 7 26224374 26224374 T G NFE2L3 Silent p.P352P 0.45 TCGA-2Y-A9HA-01 7 42958857 42958857 G A PSMA2 Intron 0.32 TCGA-2Y-A9HA-01 7 4827804 4827804 G T AP5Z1 Nonsense_Mutation p.E492* 0.45 TCGA-2Y-A9HA-01 7 82764194 82764194 G T PCLO Missense_Mutation p.T891K 0.40 unknown(0) TCGA-2Y-A9HA-01 7 89856657 89856657 A T STEAP2 Missense_Mutation p.R289W 0.36 deleterious(0) possibly_damaging(0.895) TCGA-2Y-A9HA-01 7 92134134 92134134 C G PEX1 Silent p.L661L 0.41 TCGA-2Y-A9HA-01 7 99096409 99096409 G A ZNF394 Silent p.R171R 0.44 TCGA-2Y-A9HA-01 8 113694807 113694807 C A CSMD3 Silent p.G847G 0.63 TCGA-2Y-A9HA-01 8 120103443 120103443 G T COLEC10 Silent p.G92G 0.21 TCGA-2Y-A9HA-01 8 125083748 125083748 G T FER1L6 Missense_Mutation p.G1323V 0.07 deleterious(0) probably_damaging(0.998) TCGA-2Y-A9HA-01 8 144895116 144895116 G A SCRIB Missense_Mutation p.R220W 0.04 probably_damaging(1) TCGA-2Y-A9HA-01 8 24181394 24181394 C A ADAM28 Silent p.I256I 0.09 TCGA-2Y-A9HA-01 8 48843321 48843321 C A PRKDC Missense_Mutation p.W601C 0.33 possibly_damaging(0.694) TCGA-2Y-A9HA-01 8 82583199 82583199 T G IMPA1 Missense_Mutation p.K240Q 0.18 tolerated(0.09) benign(0.271) TCGA-2Y-A9HA-01 9 125023740 125023740 T C RBM18 Missense_Mutation p.E11G 0.68 deleterious(0.04) benign(0.324) TCGA-2Y-A9HA-01 9 32786483 32786483 C T TMEM215 3'UTR 0.38 TCGA-2Y-A9HA-01 9 33246666 33246666 T C SPINK4 Missense_Mutation p.L52P 0.27 tolerated(0.51) benign(0.011) TCGA-2Y-A9HA-01 9 35792605 35792605 T C NPR2 Missense_Mutation p.V67A 0.10 tolerated(0.77) benign(0.006) TCGA-2Y-A9HA-01 9 86452226 86452226 A G KIF27 Missense_Mutation p.I1299T 0.57 tolerated_low_confidence(0.18) benign(0.044) TCGA-2Y-A9HA-01 X 154003365 154003365 A T DKC1 Intron 0.78 TCGA-2Y-A9HA-01 X 25022795 25022795 C A ARX Missense_Mutation p.V561L 0.84 tolerated(0.09) probably_damaging(0.935) TCGA-2Y-A9HA-01 X 30327147 30327147 C T NR0B1 Missense_Mutation p.D112N 0.08 deleterious_low_confidence(0) benign(0.124) TCGA-2Y-A9HA-01 X 48932926 48932926 C A WDR45 Missense_Mutation p.G282V 0.67 deleterious(0.03) possibly_damaging(0.591) TCGA-2Y-A9HA-01 X 7194007 7194007 G A STS Silent p.P279P 0.82 TCGA-2Y-A9HB-01 10 103991828 103991828 C A PITX3 Missense_Mutation p.G4C 0.33 deleterious_low_confidence(0.05) benign(0.044) TCGA-2Y-A9HB-01 10 104176348 104176348 G A PSD Missense_Mutation p.R150W 0.04 deleterious_low_confidence(0.02) benign(0.071) TCGA-2Y-A9HB-01 10 124591746 124591746 C A CUZD1 3'UTR 0.31 TCGA-2Y-A9HB-01 11 121393351 121393351 C T SORL1 Silent p.L487L 0.21 TCGA-2Y-A9HB-01 11 123601678 123601678 T G ZNF202 5'UTR 0.25 TCGA-2Y-A9HB-01 11 45924368 45924368 A G MAPK8IP1 Silent p.G350G 0.09 TCGA-2Y-A9HB-01 11 5345209 5345209 C A OR51B2 Missense_Mutation p.V107F 0.33 tolerated(1) benign(0) TCGA-2Y-A9HB-01 11 6244964 6244964 G A FAM160A2 Missense_Mutation p.P218L 0.30 deleterious(0) probably_damaging(0.964) TCGA-2Y-A9HB-01 11 67934456 67934457 - T SUV420H1 Frame_Shift_Ins p.N389Kfs*6 0.30 TCGA-2Y-A9HB-01 11 92533685 92533685 A T FAT3 Silent p.V2502V 0.31 TCGA-2Y-A9HB-01 12 10865872 10865872 C T YBX3 Missense_Mutation p.A171T 0.48 deleterious(0.03) possibly_damaging(0.775) TCGA-2Y-A9HB-01 12 2921922 2921922 G A ITFG2 5'UTR 0.59 TCGA-2Y-A9HB-01 12 49960179 49960179 C G MCRS1 Missense_Mutation p.G15A 0.37 tolerated_low_confidence(0.55) unknown(0) TCGA-2Y-A9HB-01 12 58120766 58120766 C T AGAP2 Silent p.L1109L 0.38 TCGA-2Y-A9HB-01 13 27241651 27241651 T C WASF3 Intron 0.28 TCGA-2Y-A9HB-01 14 101201153 101201153 G A DLK1 Missense_Mutation p.D358N 0.45 tolerated(0.36) benign(0.388) TCGA-2Y-A9HB-01 14 21490285 21490285 T G NDRG2 Missense_Mutation p.N94H 0.30 tolerated(1) probably_damaging(0.989) TCGA-2Y-A9HB-01 14 31644219 31644219 C T HECTD1 Missense_Mutation p.M167I 0.05 deleterious(0) probably_damaging(0.942) TCGA-2Y-A9HB-01 14 50649189 50649189 A T SOS2 Missense_Mutation p.L284M 0.35 tolerated(0.24) possibly_damaging(0.836) TCGA-2Y-A9HB-01 14 90446920 90446920 G T TDP1 Silent p.R276R 0.30 TCGA-2Y-A9HB-01 14 94848963 94848964 TG - SERPINA1 Frame_Shift_Del p.T204Sfs*11 0.29 TCGA-2Y-A9HB-01 15 48058110 48058110 A T SEMA6D Missense_Mutation p.Q491L 0.05 deleterious(0) benign(0.082) TCGA-2Y-A9HB-01 15 88690596 88690596 T C NTRK3 Missense_Mutation p.Q145R 0.50 tolerated(0.69) benign(0.015) TCGA-2Y-A9HB-01 15 96877632 96877632 C G NR2F2 Missense_Mutation p.A257G 0.22 deleterious(0) probably_damaging(0.986) TCGA-2Y-A9HB-01 16 24826592 24826592 G A TNRC6A Silent p.S1599S 0.45 TCGA-2Y-A9HB-01 16 30774809 30774809 C G RNF40 Missense_Mutation p.A124G 0.46 tolerated(0.37) benign(0) TCGA-2Y-A9HB-01 16 70161189 70161189 G T PDPR Missense_Mutation p.C85F 0.38 tolerated(0.49) probably_damaging(0.982) TCGA-2Y-A9HB-01 17 11515213 11515213 G T DNAH9 Intron 0.26 TCGA-2Y-A9HB-01 17 38569014 38569014 C T TOP2A Silent p.L262L 0.05 TCGA-2Y-A9HB-01 17 39412266 39412266 G A KRTAP9-9 3'UTR 0.26 TCGA-2Y-A9HB-01 17 40453352 40453352 C G STAT5A Missense_Mutation p.A350G 0.31 tolerated(0.06) probably_damaging(0.964) TCGA-2Y-A9HB-01 17 80041427 80041427 A G FASN Silent p.I1769I 0.33 TCGA-2Y-A9HB-01 18 31324357 31324357 G A ASXL3 Silent p.A1515A 0.06 TCGA-2Y-A9HB-01 18 43418834 43418836 GGG - SIGLEC15 In_Frame_Del p.E216_G217delinsD 0.34 TCGA-2Y-A9HB-01 18 61304866 61304866 C G SERPINB4 3'UTR 0.20 TCGA-2Y-A9HB-01 19 11616972 11616972 C G ECSIT 3'UTR 0.57 TCGA-2Y-A9HB-01 19 18433893 18433893 G T LSM4 5'UTR 0.38 TCGA-2Y-A9HB-01 19 3452573 3452573 C T NFIC Missense_Mutation p.A393V 0.43 deleterious(0.04) probably_damaging(0.999) TCGA-2Y-A9HB-01 19 3778345 3778345 G T MATK Missense_Mutation p.H455N 0.39 deleterious(0.02) benign(0.433) TCGA-2Y-A9HB-01 19 50436494 50436494 G T ATF5 3'UTR 0.40 TCGA-2Y-A9HB-01 1 100741183 100741183 T G RTCA Missense_Mutation p.V228G 0.28 tolerated(0.22) benign(0.02) TCGA-2Y-A9HB-01 1 156269306 156269306 T C VHLL 5'UTR 0.18 TCGA-2Y-A9HB-01 1 179041061 179041061 A T FAM20B Missense_Mutation p.T338S 0.42 deleterious(0.05) probably_damaging(0.967) TCGA-2Y-A9HB-01 1 18014160 18014160 C G ARHGEF10L Silent p.T1034T 0.25 TCGA-2Y-A9HB-01 1 183519889 183519889 A G SMG7 Missense_Mutation p.H1000R 0.21 deleterious_low_confidence(0) benign(0.325) TCGA-2Y-A9HB-01 1 230492978 230492978 G A PGBD5 Nonsense_Mutation p.Q72* 0.61 TCGA-2Y-A9HB-01 1 237824155 237824155 A G RYR2 Missense_Mutation p.M2782V 0.57 possibly_damaging(0.545) TCGA-2Y-A9HB-01 1 241875158 241875158 T G WDR64 Silent p.V333V 0.18 TCGA-2Y-A9HB-01 1 45297690 45297690 T C PTCH2 Missense_Mutation p.Y161C 0.36 deleterious(0) possibly_damaging(0.627) TCGA-2Y-A9HB-01 1 63021551 63021551 T C DOCK7 Silent p.S847S 0.31 TCGA-2Y-A9HB-01 1 63091000 63091000 C T DOCK7 Missense_Mutation p.S452N 0.33 tolerated(0.15) benign(0.049) TCGA-2Y-A9HB-01 1 84543803 84543803 C T RP11-486G15.2 5'Flank 0.10 TCGA-2Y-A9HB-01 1 91406004 91406004 A G ZNF644 Missense_Mutation p.Y303H 0.38 tolerated(0.43) probably_damaging(0.998) TCGA-2Y-A9HB-01 21 33641405 33641405 T C MIS18A Silent p.L215L 0.50 TCGA-2Y-A9HB-01 22 38055327 38055327 C A PDXP Missense_Mutation p.P180T 0.21 tolerated(0.77) benign(0.028) TCGA-2Y-A9HB-01 2 114258512 114258512 C A FOXD4L1 3'UTR 0.06 TCGA-2Y-A9HB-01 2 130872903 130872903 T A POTEF Splice_Site p.X174_splice 0.17 TCGA-2Y-A9HB-01 2 170099496 170099496 A C LRP2 Missense_Mutation p.C1213G 0.22 probably_damaging(1) TCGA-2Y-A9HB-01 2 219886575 219886575 G A CCDC108 Silent p.D1019D 0.04 TCGA-2Y-A9HB-01 2 219919887 219919887 G A IHH 3'UTR 0.30 TCGA-2Y-A9HB-01 2 224866386 224866386 C T SERPINE2 Missense_Mutation p.A90T 0.14 tolerated(0.71) benign(0.001) TCGA-2Y-A9HB-01 2 27596783 27596783 G A SNX17 Missense_Mutation p.G126E 0.33 deleterious(0.02) possibly_damaging(0.696) TCGA-2Y-A9HB-01 2 32157198 32157198 T C MEMO1 Silent p.A50A 0.38 TCGA-2Y-A9HB-01 2 32822997 32822997 T G BIRC6 Missense_Mutation p.F4598V 0.18 probably_damaging(0.998) TCGA-2Y-A9HB-01 2 69475540 69475540 T C ANTXR1 3'UTR 0.47 TCGA-2Y-A9HB-01 2 73519846 73519846 C G EGR4 Missense_Mutation p.C170S 0.22 tolerated(0.19) benign(0.046) TCGA-2Y-A9HB-01 3 129813246 129813246 G A AC083906.2 5'Flank 0.23 TCGA-2Y-A9HB-01 3 186502787 186502787 G C EIF4A2 Missense_Mutation p.G82A 0.33 deleterious(0) probably_damaging(0.995) TCGA-2Y-A9HB-01 3 190167544 190167544 A C TMEM207 Missense_Mutation p.L19V 0.30 tolerated(0.07) benign(0.215) TCGA-2Y-A9HB-01 3 41266124 41266124 A G CTNNB1 Missense_Mutation p.T41A 0.21 deleterious(0) possibly_damaging(0.844) TCGA-2Y-A9HB-01 3 45517966 45517966 G C LARS2 Missense_Mutation p.G289R 0.29 deleterious(0.03) probably_damaging(0.977) TCGA-2Y-A9HB-01 4 114276704 114276704 G T ANK2 Missense_Mutation p.E2310D 0.34 benign(0.007) TCGA-2Y-A9HB-01 4 142053651 142053651 G T RNF150 Silent p.P104P 0.25 TCGA-2Y-A9HB-01 4 2986240 2986240 G A GRK4 Missense_Mutation p.G18E 0.03 deleterious(0) benign(0.202) TCGA-2Y-A9HB-01 4 5620331 5620331 A G EVC2 Silent p.A860A 0.05 TCGA-2Y-A9HB-01 4 6107374 6107374 C T JAKMIP1 Silent p.R150R 0.34 TCGA-2Y-A9HB-01 5 112173329 112173329 G T APC Missense_Mutation p.A680S 0.49 probably_damaging(0.986) TCGA-2Y-A9HB-01 5 126791174 126791174 C T MEGF10 Missense_Mutation p.P1036L 0.44 tolerated(0.21) probably_damaging(0.998) TCGA-2Y-A9HB-01 5 131939116 131939116 A G RAD50 Missense_Mutation p.I778V 0.28 tolerated(0.35) benign(0) TCGA-2Y-A9HB-01 5 180486695 180486695 G A BTNL9 Missense_Mutation p.A481T 0.16 tolerated(0.39) benign(0.041) TCGA-2Y-A9HB-01 6 102134116 102134116 G - GRIK2 Frame_Shift_Del p.R280Kfs*3 0.24 TCGA-2Y-A9HB-01 6 111695908 111695908 T G REV3L Missense_Mutation p.K1217T 0.33 tolerated_low_confidence(0.09) benign(0.293) TCGA-2Y-A9HB-01 6 31975232 31975232 G A C4A 3'Flank 0.17 TCGA-2Y-A9HB-01 6 35434031 35434031 C G FANCE Missense_Mutation p.T507S 0.37 tolerated(0.15) benign(0.133) TCGA-2Y-A9HB-01 6 90353594 90353594 C T MDN1 3'UTR 0.30 TCGA-2Y-A9HB-01 7 12376619 12376619 T G VWDE Missense_Mutation p.N1518T 0.35 deleterious(0.01) benign(0.032) TCGA-2Y-A9HB-01 7 12428766 12428766 G T VWDE Silent p.G154G 0.23 TCGA-2Y-A9HB-01 7 150761796 150761796 C T SLC4A2 Missense_Mutation p.A134V 0.37 tolerated_low_confidence(0.26) benign(0.001) TCGA-2Y-A9HB-01 7 24911674 24911674 C T OSBPL3 Silent p.V37V 0.42 TCGA-2Y-A9HB-01 7 44575496 44575496 G A NPC1L1 Silent p.V642V 0.30 TCGA-2Y-A9HB-01 7 5352545 5352545 G T TNRC18 Silent p.S2659S 0.07 TCGA-2Y-A9HB-01 7 6836421 6836421 C G RSPH10B2 Intron 0.04 TCGA-2Y-A9HB-01 7 87564416 87564416 G A ADAM22 Missense_Mutation p.R54H 0.28 deleterious(0) probably_damaging(0.999) TCGA-2Y-A9HB-01 8 117950650 117950650 G A AARD Silent p.L56L 0.36 TCGA-2Y-A9HB-01 8 119209814 119209814 T - SAMD12 3'UTR 0.23 TCGA-2Y-A9HB-01 8 133911108 133911108 C T TG Nonsense_Mutation p.Q1095* 0.34 TCGA-2Y-A9HB-01 8 144406772 144406772 C A TOP1MT Silent p.A233A 0.17 TCGA-2Y-A9HB-01 8 144940679 144940679 G T EPPK1 Missense_Mutation p.A2248D 0.24 probably_damaging(0.999) TCGA-2Y-A9HB-01 8 22885267 22885267 C T TNFRSF10B Splice_Site p.X250_splice 0.48 TCGA-2Y-A9HB-01 8 39468433 39468433 C T ADAM18 Intron 0.63 TCGA-2Y-A9HB-01 8 52321471 52321471 G A PXDNL Missense_Mutation p.R905W 0.26 tolerated(0.11) benign(0.009) TCGA-2Y-A9HB-01 8 75157022 75157022 C T JPH1 Silent p.Q549Q 0.30 TCGA-2Y-A9HB-01 9 116451 116451 G T FOXD4 3'UTR 0.08 TCGA-2Y-A9HB-01 9 125239463 125239463 A C OR1J1 Missense_Mutation p.V248G 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2Y-A9HB-01 9 133759735 133759735 G C ABL1 Silent p.L705L 0.39 TCGA-2Y-A9HB-01 9 133759741 133759741 G T ABL1 Missense_Mutation p.K707N 0.43 deleterious_low_confidence(0) benign(0.357) TCGA-2Y-A9HB-01 9 138714941 138714941 C T CAMSAP1 Silent p.T522T 0.31 TCGA-2Y-A9HB-01 9 139959358 139959358 T A SAPCD2 Missense_Mutation p.Q338L 0.33 deleterious(0) probably_damaging(0.909) TCGA-2Y-A9HB-01 9 21409340 21409340 C A IFNA8 Missense_Mutation p.D55E 0.24 deleterious(0.01) benign(0.295) TCGA-2Y-A9HB-01 9 43627118 43627118 T C SPATA31A6 Silent p.A523A 0.33 TCGA-2Y-A9HB-01 X 123196845 123196845 G C STAG2 Splice_Site p.X577_splice 0.62 TCGA-2Y-A9HB-01 X 153043754 153043754 C A PLXNB3 Silent p.I1839I 0.10 TCGA-2Y-A9HB-01 X 20206619 20206619 T A RPS6KA3 Missense_Mutation p.L209F 0.45 deleterious(0) probably_damaging(0.979) TCGA-2Y-A9HB-01 X 30327260 30327260 G T NR0B1 Missense_Mutation p.P74Q 0.67 tolerated_low_confidence(0.13) benign(0.403) TCGA-2Y-A9HB-01 X 5811119 5811119 C A NLGN4X Missense_Mutation p.M730I 0.67 tolerated_low_confidence(0.24) benign(0.002) TCGA-3K-AAZ8-01 10 101120654 101120654 T C CNNM1 Missense_Mutation p.F594L 0.44 deleterious(0) probably_damaging(0.993) TCGA-3K-AAZ8-01 10 116164333 116164333 T C AFAP1L2 5'Flank 0.33 TCGA-3K-AAZ8-01 10 23292182 23292182 G C ARMC3 Missense_Mutation p.D524H 0.39 deleterious(0) possibly_damaging(0.86) TCGA-3K-AAZ8-01 10 63976888 63976888 G A RTKN2 Missense_Mutation p.P337S 0.14 tolerated(0.65) benign(0.008) TCGA-3K-AAZ8-01 10 96708945 96708945 A C CYP2C9 Missense_Mutation p.K241N 0.03 tolerated(0.06) benign(0.122) TCGA-3K-AAZ8-01 11 103908787 103908787 C A DDI1 3'UTR 0.58 TCGA-3K-AAZ8-01 11 117374731 117374731 C T DSCAML1 Missense_Mutation p.G790R 0.24 deleterious(0.03) probably_damaging(0.976) TCGA-3K-AAZ8-01 11 124294237 124294237 C A OR8B4 Silent p.L177L 0.56 TCGA-3K-AAZ8-01 11 125496682 125496683 - A CHEK1 Frame_Shift_Ins p.D8Rfs*22 0.14 TCGA-3K-AAZ8-01 11 134175028 134175028 G T GLB1L3 Intron 0.08 TCGA-3K-AAZ8-01 11 43964957 43964957 A T C11orf96 3'Flank 0.62 TCGA-3K-AAZ8-01 11 62381849 62381849 C G ROM1 Missense_Mutation p.P237R 0.30 tolerated(0.44) probably_damaging(0.968) TCGA-3K-AAZ8-01 11 62389402 62389402 C T B3GAT3 Silent p.K6K 0.05 TCGA-3K-AAZ8-01 11 65000619 65000619 A T SLC22A20 Splice_Site 0.39 TCGA-3K-AAZ8-01 11 65294532 65294532 G A SCYL1 Missense_Mutation p.G265S 0.20 tolerated(0.06) benign(0.175) TCGA-3K-AAZ8-01 11 6643123 6643123 C G DCHS1 Missense_Mutation p.A3262P 0.17 deleterious(0) probably_damaging(0.983) TCGA-3K-AAZ8-01 11 6806964 6806964 G A OR2AG1 Silent p.E232E 0.48 TCGA-3K-AAZ8-01 11 68772841 68772841 C - MRGPRF Frame_Shift_Del p.A313Pfs*110 0.27 TCGA-3K-AAZ8-01 11 74717159 74717159 A C NEU3 Silent p.A336A 0.14 TCGA-3K-AAZ8-01 11 76727823 76727823 G C ACER3 Missense_Mutation p.S235T 0.26 tolerated(0.26) benign(0.071) TCGA-3K-AAZ8-01 12 104697876 104697876 G A EID3 Missense_Mutation p.R55Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-3K-AAZ8-01 12 104698798 104698798 T G EID3 3'UTR 0.52 TCGA-3K-AAZ8-01 12 121622253 121622253 G A P2RX7 Missense_Mutation p.C479Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-3K-AAZ8-01 12 123057714 123057714 G C KNTC1 Missense_Mutation p.R722P 0.23 deleterious(0.03) probably_damaging(0.992) TCGA-3K-AAZ8-01 12 22035740 22035740 C T ABCC9 Missense_Mutation p.R660Q 0.55 tolerated(0.27) benign(0.01) TCGA-3K-AAZ8-01 12 25148920 25148920 T A C12orf77 Silent p.R76R 0.53 TCGA-3K-AAZ8-01 12 31633069 31633069 A - DENND5B Frame_Shift_Del p.Y120Mfs*52 0.27 TCGA-3K-AAZ8-01 12 46231189 46231189 T G ARID2 Nonsense_Mutation p.L370* 0.49 TCGA-3K-AAZ8-01 12 49445845 49445845 C T KMT2D Missense_Mutation p.E541K 0.18 unknown(0) TCGA-3K-AAZ8-01 12 57562953 57562953 C A LRP1 Missense_Mutation p.A1009D 0.63 benign(0.05) TCGA-3K-AAZ8-01 12 68553327 68553327 G A IFNG Silent p.C23C 0.44 TCGA-3K-AAZ8-01 12 6946251 6946251 G A LEPREL2 Splice_Site p.X519_splice 0.79 TCGA-3K-AAZ8-01 13 41134803 41134803 T C FOXO1 Silent p.A275A 0.24 TCGA-3K-AAZ8-01 13 50205550 50205550 A G ARL11 3'UTR 0.24 TCGA-3K-AAZ8-01 13 61985776 61985776 C T PCDH20 Missense_Mutation p.R819H 0.16 deleterious(0) benign(0.121) TCGA-3K-AAZ8-01 14 44976276 44976276 A G FSCB 5'UTR 0.36 TCGA-3K-AAZ8-01 14 61924300 61924300 A T PRKCH Missense_Mutation p.D394V 0.40 deleterious(0) probably_damaging(0.977) TCGA-3K-AAZ8-01 14 63246590 63246590 A G KCNH5 Silent p.H625H 0.48 TCGA-3K-AAZ8-01 14 75514207 75514207 G C MLH3 Missense_Mutation p.P718A 0.26 deleterious(0.02) benign(0.099) TCGA-3K-AAZ8-01 14 75745588 75745588 G A FOS 5'UTR 0.50 TCGA-3K-AAZ8-01 15 41137095 41137095 G C SPINT1 Missense_Mutation p.A115P 0.55 tolerated(0.06) benign(0.006) TCGA-3K-AAZ8-01 15 42743691 42743691 T A ZNF106 Missense_Mutation p.Y237F 0.24 tolerated(0.53) probably_damaging(0.993) TCGA-3K-AAZ8-01 15 64967423 64967423 T C ZNF609 Silent p.A790A 0.55 TCGA-3K-AAZ8-01 15 78873234 78873234 G A CHRNA5 Missense_Mutation p.R63H 0.37 deleterious(0) probably_damaging(1) TCGA-3K-AAZ8-01 15 99511569 99511569 G C PGPEP1L 3'UTR 0.28 TCGA-3K-AAZ8-01 16 15501839 15501839 G A MPV17L Missense_Mutation p.G154E 0.39 deleterious(0) probably_damaging(1) TCGA-3K-AAZ8-01 16 16177302 16177302 T A ABCC1 Missense_Mutation p.L732Q 0.30 deleterious(0.02) benign(0.122) TCGA-3K-AAZ8-01 16 19867946 19867958 TCTCTTGTGATTT - IQCK 3'UTR 0.30 TCGA-3K-AAZ8-01 16 46956209 46956209 G T GPT2 Missense_Mutation p.G365C 0.33 deleterious(0.01) possibly_damaging(0.637) TCGA-3K-AAZ8-01 16 4816079 4816079 T A ZNF500 Splice_Site 0.56 TCGA-3K-AAZ8-01 16 50816274 50816274 A C CYLD Missense_Mutation p.T575P 0.42 deleterious(0) probably_damaging(0.925) TCGA-3K-AAZ8-01 16 56485168 56485168 T G NUDT21 5'UTR 0.25 TCGA-3K-AAZ8-01 16 75563641 75563641 C T CHST5 Silent p.A214A 0.36 TCGA-3K-AAZ8-01 17 13504520 13504520 C G HS3ST3A1 5'UTR 0.41 TCGA-3K-AAZ8-01 17 19699421 19699421 C T ULK2 Missense_Mutation p.A662T 0.14 tolerated(0.23) benign(0.002) TCGA-3K-AAZ8-01 17 39254019 39254019 C T KRTAP4-8 Silent p.V106V 0.27 TCGA-3K-AAZ8-01 17 55183730 55183730 G A AKAP1 Missense_Mutation p.G302E 0.34 tolerated(0.15) benign(0.231) TCGA-3K-AAZ8-01 17 55917037 55917037 T C MRPS23 3'UTR 0.43 TCGA-3K-AAZ8-01 17 56676416 56676416 C A TEX14 Nonsense_Mutation p.E770* 0.41 TCGA-3K-AAZ8-01 17 60821843 60821843 C A MARCH10 Silent p.L143L 0.35 TCGA-3K-AAZ8-01 17 74737074 74737074 A G MFSD11 Missense_Mutation p.N63S 0.36 deleterious(0.04) possibly_damaging(0.865) TCGA-3K-AAZ8-01 17 75478440 75478440 A C SEPT9 Intron 0.36 TCGA-3K-AAZ8-01 17 8141726 8141726 C A CTC1 Missense_Mutation p.G140V 0.46 deleterious(0) probably_damaging(1) TCGA-3K-AAZ8-01 17 9460750 9460750 C T STX8 Splice_Site p.X71_splice 0.45 TCGA-3K-AAZ8-01 18 14542896 14542896 C T POTEC Missense_Mutation p.G84R 0.05 deleterious_low_confidence(0.02) probably_damaging(0.953) TCGA-3K-AAZ8-01 18 22805711 22805711 C A ZNF521 Missense_Mutation p.C724F 0.39 deleterious(0) probably_damaging(0.999) TCGA-3K-AAZ8-01 18 54814759 54814759 G T BOD1L2 Silent p.L72L 0.25 TCGA-3K-AAZ8-01 18 55833084 55833084 T A NEDD4L Missense_Mutation p.F38Y 0.12 deleterious(0) benign(0.285) TCGA-3K-AAZ8-01 18 61260116 61260116 A G SERPINB13 Missense_Mutation p.Y128C 0.37 deleterious(0) probably_damaging(1) TCGA-3K-AAZ8-01 19 10514108 10514108 T G CDC37 Missense_Mutation p.E16D 0.44 deleterious(0) probably_damaging(0.998) TCGA-3K-AAZ8-01 19 11352411 11352411 C A C19orf80 3'UTR 0.39 TCGA-3K-AAZ8-01 19 16688436 16688436 G T MED26 Missense_Mutation p.L69I 0.08 deleterious(0.01) possibly_damaging(0.68) TCGA-3K-AAZ8-01 19 17004084 17004084 G A CPAMD8 Silent p.S1878S 0.20 TCGA-3K-AAZ8-01 19 19612126 19612126 G A GATAD2A Silent p.Q467Q 0.38 TCGA-3K-AAZ8-01 19 31767550 31767550 A G TSHZ3 Missense_Mutation p.F1050S 0.41 deleterious(0) probably_damaging(0.999) TCGA-3K-AAZ8-01 19 35829095 35829095 A T CD22 Missense_Mutation p.Q337L 0.44 tolerated(0.05) benign(0.037) TCGA-3K-AAZ8-01 19 39961060 39961060 C T SUPT5H Missense_Mutation p.A525V 0.36 deleterious(0) probably_damaging(0.928) TCGA-3K-AAZ8-01 19 45976262 45976262 G T FOSB Missense_Mutation p.A337S 0.07 deleterious(0.01) possibly_damaging(0.844) TCGA-3K-AAZ8-01 19 49973911 49973911 T C ALDH16A1 3'UTR 0.24 TCGA-3K-AAZ8-01 19 53652026 53652026 A T ZNF347 Nonsense_Mutation p.L61* 0.39 TCGA-3K-AAZ8-01 19 53793436 53793436 T A BIRC8 Silent p.P64P 0.41 TCGA-3K-AAZ8-01 19 54964820 54964820 A G LENG8 Silent p.Q137Q 0.14 TCGA-3K-AAZ8-01 19 56156891 56156891 G A ZNF581 3'UTR 0.38 TCGA-3K-AAZ8-01 1 10042386 10042386 G T NMNAT1 Missense_Mutation p.G156V 0.32 deleterious(0) probably_damaging(1) TCGA-3K-AAZ8-01 1 110465986 110465986 G T CSF1 Missense_Mutation p.S248I 0.07 deleterious(0.01) possibly_damaging(0.73) TCGA-3K-AAZ8-01 1 111861228 111861228 T A CHIA Silent p.I281I 0.33 TCGA-3K-AAZ8-01 1 117487437 117487437 G T PTGFRN Missense_Mutation p.W185C 0.08 deleterious(0) probably_damaging(0.954) TCGA-3K-AAZ8-01 1 154245239 154245239 C A HAX1 Missense_Mutation p.P14T 0.21 deleterious(0.01) benign(0.281) TCGA-3K-AAZ8-01 1 154931785 154931785 C T PYGO2 Missense_Mutation p.G231S 0.08 tolerated(1) benign(0.004) TCGA-3K-AAZ8-01 1 158390373 158390373 A T OR10K2 Missense_Mutation p.L95Q 0.29 tolerated(0.43) benign(0.181) TCGA-3K-AAZ8-01 1 173010529 173010529 G A TNFSF18 Missense_Mutation p.A193V 0.62 tolerated(0.1) benign(0.019) TCGA-3K-AAZ8-01 1 179452348 179452348 C A AXDND1 Missense_Mutation p.Q695K 0.19 tolerated(0.24) benign(0.292) TCGA-3K-AAZ8-01 1 182458311 182458311 A C RGSL1 Missense_Mutation p.E564A 0.19 deleterious(0.01) benign(0.408) TCGA-3K-AAZ8-01 1 19568962 19568962 T A EMC1 Missense_Mutation p.Q129L 0.58 deleterious(0.01) possibly_damaging(0.816) TCGA-3K-AAZ8-01 1 198828031 198828031 A G MIR181B1 RNA 0.15 TCGA-3K-AAZ8-01 1 203137795 203137795 C T MYBPH Missense_Mutation p.A476T 0.05 tolerated(1) benign(0) TCGA-3K-AAZ8-01 1 228588704 228588704 G A TRIM11 Silent p.L232L 0.54 TCGA-3K-AAZ8-01 1 233121464 233121464 C T PCNXL2 Intron 0.38 TCGA-3K-AAZ8-01 1 241920625 241920625 T C WDR64 Missense_Mutation p.L594P 0.65 deleterious(0) probably_damaging(0.986) TCGA-3K-AAZ8-01 1 242030336 242030336 A G EXO1 Missense_Mutation p.I416V 0.16 tolerated(0.98) benign(0.001) TCGA-3K-AAZ8-01 1 244653769 244653769 C T C1orf101 Missense_Mutation p.T116I 0.15 tolerated(0.18) benign(0.184) TCGA-3K-AAZ8-01 1 247593020 247593020 A G NLRP3 Missense_Mutation p.T764A 0.39 tolerated(0.18) benign(0.001) TCGA-3K-AAZ8-01 1 29602163 29602163 A T PTPRU Missense_Mutation p.I450F 0.48 deleterious(0) benign(0.066) TCGA-3K-AAZ8-01 1 3329297 3329297 C T PRDM16 Missense_Mutation p.R846W 0.53 deleterious(0) possibly_damaging(0.462) TCGA-3K-AAZ8-01 1 34035031 34035031 T A CSMD2 Missense_Mutation p.R2694W 0.30 deleterious(0.01) probably_damaging(0.98) TCGA-3K-AAZ8-01 1 58971782 58971782 G A OMA1 Missense_Mutation p.H439Y 0.23 deleterious(0) probably_damaging(1) TCGA-3K-AAZ8-01 1 67648612 67648612 T A IL23R Missense_Mutation p.I154K 0.20 deleterious(0) benign(0.049) TCGA-3K-AAZ8-01 1 74834905 74834905 G A TNNI3K Missense_Mutation p.V578I 0.26 tolerated(0.07) probably_damaging(0.99) TCGA-3K-AAZ8-01 1 75766311 75766311 A G SLC44A5 Missense_Mutation p.V54A 0.47 tolerated(0.86) benign(0.003) TCGA-3K-AAZ8-01 1 94528206 94528206 T G ABCA4 Missense_Mutation p.S622R 0.10 deleterious(0.01) possibly_damaging(0.821) TCGA-3K-AAZ8-01 20 11899220 11899220 G A BTBD3 Nonsense_Mutation p.W99* 0.48 TCGA-3K-AAZ8-01 20 32265105 32265105 C A E2F1 Missense_Mutation p.G291V 0.18 deleterious(0) probably_damaging(0.997) TCGA-3K-AAZ8-01 20 35422173 35422173 T C SOGA1 Missense_Mutation p.K1438E 0.45 deleterious(0) probably_damaging(0.98) TCGA-3K-AAZ8-01 20 55746127 55746127 C A BMP7 Missense_Mutation p.C395F 0.31 deleterious(0) probably_damaging(1) TCGA-3K-AAZ8-01 20 58456074 58456074 C T SYCP2 Missense_Mutation p.G907S 0.22 tolerated(0.1) possibly_damaging(0.458) TCGA-3K-AAZ8-01 21 30971134 30971134 T C GRIK1 Intron 0.31 TCGA-3K-AAZ8-01 21 47966963 47966963 G A DIP2A Intron 0.39 TCGA-3K-AAZ8-01 22 17446135 17446135 T G GAB4 Silent p.R438R 0.46 TCGA-3K-AAZ8-01 22 32833794 32833794 T A BPIFC Missense_Mutation p.I234F 0.30 deleterious(0.02) benign(0.319) TCGA-3K-AAZ8-01 22 37425290 37425290 A G MPST Missense_Mutation p.N230S 0.42 tolerated(0.12) possibly_damaging(0.459) TCGA-3K-AAZ8-01 22 40140015 40140015 G C ENTHD1 Missense_Mutation p.S498C 0.43 deleterious(0) probably_damaging(0.982) TCGA-3K-AAZ8-01 2 108994661 108994661 C T SULT1C4 5'UTR 0.16 TCGA-3K-AAZ8-01 2 122522838 122522838 C T TSN Silent p.R194R 0.46 TCGA-3K-AAZ8-01 2 170672031 170672031 T C METTL5 Missense_Mutation p.Q166R 0.17 tolerated(0.53) benign(0.003) TCGA-3K-AAZ8-01 2 171239700 171239700 G A MYO3B Splice_Site p.X395_splice 0.08 TCGA-3K-AAZ8-01 2 179424990 179424990 A G TTN Silent p.Y28623Y 0.51 TCGA-3K-AAZ8-01 2 179489281 179489281 A T TTN Missense_Mutation p.L14909H 0.10 TCGA-3K-AAZ8-01 2 198267481 198267481 T G SF3B1 Missense_Mutation p.N626H 0.11 deleterious(0) probably_damaging(0.993) TCGA-3K-AAZ8-01 2 210683912 210683912 G T UNC80 Missense_Mutation p.S630I 0.23 probably_damaging(0.975) TCGA-3K-AAZ8-01 2 219875570 219875570 C T CCDC108 Missense_Mutation p.R1369Q 0.49 tolerated(0.63) benign(0.004) TCGA-3K-AAZ8-01 2 224462660 224462660 A G SCG2 Silent p.N447N 0.50 TCGA-3K-AAZ8-01 2 264960 264960 G T ACP1 5'UTR 0.54 TCGA-3K-AAZ8-01 2 46739542 46739542 G T ATP6V1E2 Missense_Mutation p.S103R 0.29 tolerated(0.39) benign(0.02) TCGA-3K-AAZ8-01 2 61315627 61315627 C G KIAA1841 Intron 0.47 TCGA-3K-AAZ8-01 2 62450678 62450678 C T B3GNT2 3'UTR 0.26 TCGA-3K-AAZ8-01 2 79349980 79349980 A G REG1A Missense_Mutation p.H112R 0.20 tolerated(0.2) possibly_damaging(0.681) TCGA-3K-AAZ8-01 2 85888601 85888601 G A SFTPB Missense_Mutation p.L393F 0.19 tolerated_low_confidence(1) benign(0.003) TCGA-3K-AAZ8-01 2 85888602 85888602 G T SFTPB Missense_Mutation p.D392E 0.19 tolerated_low_confidence(0.52) benign(0.006) TCGA-3K-AAZ8-01 2 98349640 98349640 A T ZAP70 Missense_Mutation p.E252V 0.49 tolerated(0.24) benign(0.225) TCGA-3K-AAZ8-01 3 130285878 130285878 T C COL6A6 Missense_Mutation p.C539R 0.48 tolerated(0.16) benign(0.016) TCGA-3K-AAZ8-01 3 179131380 179131380 A C GNB4 Silent p.T173T 0.15 TCGA-3K-AAZ8-01 3 186978538 186978538 T C MASP1 Missense_Mutation p.T180A 0.28 deleterious(0) probably_damaging(0.963) TCGA-3K-AAZ8-01 3 19384192 19384192 T C KCNH8 Silent p.L186L 0.26 TCGA-3K-AAZ8-01 3 41266137 41266137 C T CTNNB1 Missense_Mutation p.S45F 0.49 deleterious(0) probably_damaging(0.954) TCGA-3K-AAZ8-01 3 44841897 44841897 G T KIF15 Missense_Mutation p.G397V 0.26 tolerated(0.1) benign(0.023) TCGA-3K-AAZ8-01 3 50225206 50225206 T C SEMA3F Silent p.D672D 0.54 TCGA-3K-AAZ8-01 3 51749599 51749599 G T GRM2 Nonsense_Mutation p.E604* 0.26 TCGA-3K-AAZ8-01 3 98001887 98001887 T C OR5H2 Silent p.A52A 0.48 TCGA-3K-AAZ8-01 3 98072899 98072899 C T OR5K4 Silent p.L68L 0.31 TCGA-3K-AAZ8-01 4 13578590 13578590 G A BOD1L1 Silent p.R2970R 0.53 TCGA-3K-AAZ8-01 4 154519794 154519794 G A KIAA0922 Missense_Mutation p.E726K 0.50 deleterious(0) probably_damaging(0.998) TCGA-3K-AAZ8-01 4 74279213 74279215 TGT - ALB In_Frame_Del p.L308del 0.26 TCGA-3K-AAZ8-01 5 109091047 109091047 A G MAN2A1 Missense_Mutation p.Q242R 0.36 deleterious(0.02) probably_damaging(0.997) TCGA-3K-AAZ8-01 5 121356042 121356042 A T SRFBP1 Silent p.P204P 0.44 TCGA-3K-AAZ8-01 5 122435525 122435525 G A PRDM6 Missense_Mutation p.G257S 0.45 deleterious(0.01) probably_damaging(0.997) TCGA-3K-AAZ8-01 5 127666336 127666336 C A FBN2 Missense_Mutation p.C1425F 0.45 deleterious(0) probably_damaging(0.995) TCGA-3K-AAZ8-01 5 140563472 140563472 T A PCDHB16 Missense_Mutation p.D446E 0.40 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-3K-AAZ8-01 5 140735666 140735666 A G PCDHGA4 Missense_Mutation p.D300G 0.07 deleterious_low_confidence(0) possibly_damaging(0.845) TCGA-3K-AAZ8-01 5 178408583 178408583 G A GRM6 3'UTR 0.09 TCGA-3K-AAZ8-01 5 179666988 179666988 C T MAPK9 Splice_Site p.X333_splice 0.33 TCGA-3K-AAZ8-01 5 63802553 63802553 G A RGS7BP Silent p.E34E 0.42 TCGA-3K-AAZ8-01 6 15663083 15663083 G A DTNBP1 Silent p.R6R 0.26 TCGA-3K-AAZ8-01 6 157528824 157528824 G A ARID1B Silent p.Q2183Q 0.34 TCGA-3K-AAZ8-01 6 168462619 168462619 G T FRMD1 Missense_Mutation p.Q305K 0.38 deleterious(0.03) benign(0.011) TCGA-3K-AAZ8-01 6 24874014 24874014 T A FAM65B Missense_Mutation p.I39F 0.58 deleterious(0.01) possibly_damaging(0.887) TCGA-3K-AAZ8-01 6 26412786 26412786 A G BTN3A1 Intron 0.28 TCGA-3K-AAZ8-01 6 47253741 47253741 G A TNFRSF21 Silent p.I229I 0.27 TCGA-3K-AAZ8-01 6 52935834 52935834 A G FBXO9 Missense_Mutation p.I5V 0.57 deleterious_low_confidence(0) benign(0) TCGA-3K-AAZ8-01 6 53159142 53159142 G A ELOVL5 Intron 0.26 TCGA-3K-AAZ8-01 6 56484410 56484410 T G DST Intron 0.24 TCGA-3K-AAZ8-01 6 63995538 63995538 A C LGSN Missense_Mutation p.L95R 0.31 deleterious(0) probably_damaging(0.968) TCGA-3K-AAZ8-01 6 80223048 80223048 A G LCA5 Missense_Mutation p.F201L 0.41 tolerated(0.65) benign(0.006) TCGA-3K-AAZ8-01 7 100284298 100284298 C - GIGYF1 Frame_Shift_Del p.G223Afs*122 0.31 TCGA-3K-AAZ8-01 7 129395150 129395150 A T NRF1 3'UTR 0.11 TCGA-3K-AAZ8-01 7 138794071 138794071 C A ZC3HAV1 Missense_Mutation p.D3Y 0.08 deleterious(0) probably_damaging(0.99) TCGA-3K-AAZ8-01 7 150776949 150776949 C T FASTK Missense_Mutation p.R48Q 0.10 tolerated_low_confidence(0.05) benign(0.007) TCGA-3K-AAZ8-01 7 1733391 1733391 G A AC074389.6 Silent p.D47D 0.47 TCGA-3K-AAZ8-01 7 27194525 27194525 C T HOXA7 3'UTR 0.08 TCGA-3K-AAZ8-01 7 31146182 31146182 C T ADCYAP1R1 Nonsense_Mutation p.R459* 0.35 TCGA-3K-AAZ8-01 7 40133764 40133764 A C CDK13 Missense_Mutation p.I1242L 0.37 tolerated_low_confidence(1) benign(0.001) TCGA-3K-AAZ8-01 8 26238914 26238914 T C BNIP3L 5'Flank 0.33 TCGA-3K-AAZ8-01 8 38006210 38006210 G A STAR Missense_Mutation p.P43S 0.41 tolerated(0.32) benign(0.005) TCGA-3K-AAZ8-01 8 42218856 42218856 C A POLB Silent p.P198P 0.53 TCGA-3K-AAZ8-01 8 52323847 52323847 A G PXDNL Silent p.R675R 0.69 TCGA-3K-AAZ8-01 8 56711552 56711552 A G TGS1 Missense_Mutation p.H541R 0.18 deleterious(0.05) benign(0.035) TCGA-3K-AAZ8-01 8 75929313 75929313 A G CRISPLD1 Missense_Mutation p.K321E 0.16 tolerated(0.06) benign(0.063) TCGA-3K-AAZ8-01 8 88296944 88296944 G T CNBD1 Missense_Mutation p.M270I 0.04 tolerated(0.61) benign(0) TCGA-3K-AAZ8-01 8 95164135 95164135 C T CDH17 Missense_Mutation p.G586D 0.72 deleterious(0.02) possibly_damaging(0.616) TCGA-3K-AAZ8-01 9 114304529 114304529 T C ZNF483 Silent p.T438T 0.21 TCGA-3K-AAZ8-01 9 123943729 123943729 T C RAB14 Missense_Mutation p.Q198R 0.39 tolerated(0.98) benign(0.001) TCGA-3K-AAZ8-01 9 129854065 129854065 T G ANGPTL2 Missense_Mutation p.E389A 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-3K-AAZ8-01 9 139379108 139379108 G C C9orf163 Missense_Mutation p.G70R 0.51 tolerated_low_confidence(0.05) probably_damaging(0.979) TCGA-3K-AAZ8-01 9 21227588 21227588 A T IFNA17 3'UTR 0.14 TCGA-3K-AAZ8-01 9 33443760 33443760 T A AQP3 Intron 0.41 TCGA-3K-AAZ8-01 9 376287 376287 T C DOCK8 Silent p.V729V 0.48 TCGA-3K-AAZ8-01 9 5921657 5921657 T C KIAA2026 Missense_Mutation p.K1447E 0.20 deleterious(0.01) benign(0.081) TCGA-3K-AAZ8-01 9 92220779 92220779 A C GADD45G Missense_Mutation p.H118P 0.46 deleterious(0) possibly_damaging(0.814) TCGA-3K-AAZ8-01 X 144911123 144911123 G A TMEM257 3'UTR 0.77 TCGA-3K-AAZ8-01 X 153068845 153068845 C T PDZD4 Missense_Mutation p.R758Q 0.70 deleterious(0.02) possibly_damaging(0.484) TCGA-3K-AAZ8-01 X 40506585 40506585 C T CXorf38 Missense_Mutation p.G63D 0.60 deleterious(0.02) possibly_damaging(0.628) TCGA-3K-AAZ8-01 X 591360 591360 G A SHOX 5'UTR 0.34 TCGA-4R-AA8I-01 10 100380428 100380428 A T HPSE2 Missense_Mutation p.L379H 0.06 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 10 101089318 101089318 G - CNNM1 Frame_Shift_Del p.G60Afs*174 0.21 TCGA-4R-AA8I-01 10 102058491 102058491 A G PKD2L1 Missense_Mutation p.F187L 0.27 tolerated(0.08) benign(0.232) TCGA-4R-AA8I-01 10 102740362 102740362 T A SEMA4G Missense_Mutation p.V460D 0.35 tolerated(0.63) probably_damaging(0.999) TCGA-4R-AA8I-01 10 102763834 102763834 T C LZTS2 Missense_Mutation p.C327R 0.08 tolerated(0.61) benign(0) TCGA-4R-AA8I-01 10 103870859 103870859 A G LDB1 Silent p.F72F 0.55 TCGA-4R-AA8I-01 10 105005831 105005831 G A RPEL1 Missense_Mutation p.M26I 0.33 tolerated(0.1) benign(0.078) TCGA-4R-AA8I-01 10 105046846 105046846 C T INA Missense_Mutation p.R374C 0.04 deleterious(0.01) benign(0.212) TCGA-4R-AA8I-01 10 105182857 105182857 C A PDCD11 Silent p.P870P 0.44 TCGA-4R-AA8I-01 10 105762305 105762305 A T SLK Missense_Mutation p.I457L 0.46 tolerated(0.8) benign(0.006) TCGA-4R-AA8I-01 10 106075738 106075738 C T ITPRIP Silent p.P24P 0.33 TCGA-4R-AA8I-01 10 106401491 106401491 C - SORCS3 Frame_Shift_Del p.P137Qfs*32 0.28 TCGA-4R-AA8I-01 10 112337617 112337617 C T SMC3 Nonsense_Mutation p.R99* 0.40 TCGA-4R-AA8I-01 10 114900984 114900984 C - TCF7L2 Frame_Shift_Del p.L200Sfs*25 0.23 TCGA-4R-AA8I-01 10 114901029 114901029 G A TCF7L2 Silent p.P213P 0.30 TCGA-4R-AA8I-01 10 115884765 115884766 - T C10orf118 3'UTR 0.42 TCGA-4R-AA8I-01 10 115922363 115922363 A - C10orf118 Intron 0.43 TCGA-4R-AA8I-01 10 118116936 118116936 C T CCDC172 Nonsense_Mutation p.Q165* 0.04 TCGA-4R-AA8I-01 10 118139186 118139186 A G CCDC172 3'UTR 0.23 TCGA-4R-AA8I-01 10 118896110 118896110 T G VAX1 Missense_Mutation p.K101T 0.46 deleterious(0) unknown(0) TCGA-4R-AA8I-01 10 126100693 126100693 G A OAT Silent p.R16R 0.45 TCGA-4R-AA8I-01 10 127455132 127455132 T C MMP21 3'UTR 0.46 TCGA-4R-AA8I-01 10 13271640 13271640 A G UCMA Missense_Mutation p.F97S 0.08 tolerated(0.19) benign(0.015) TCGA-4R-AA8I-01 10 134628105 134628105 G A TTC40 Missense_Mutation p.P2421S 0.08 deleterious(0) probably_damaging(0.998) TCGA-4R-AA8I-01 10 135352533 135352533 T C CYP2E1 3'UTR 0.12 TCGA-4R-AA8I-01 10 14885696 14885696 C T HSPA14 Intron 0.62 TCGA-4R-AA8I-01 10 15145341 15145341 C T RPP38 Missense_Mutation p.R10W 0.48 deleterious(0) probably_damaging(0.996) TCGA-4R-AA8I-01 10 15590538 15590538 G A ITGA8 Silent p.I932I 0.46 TCGA-4R-AA8I-01 10 16877086 16877086 T C CUBN Missense_Mutation p.N3430S 0.08 tolerated(0.06) benign(0.361) TCGA-4R-AA8I-01 10 17279419 17279419 A G VIM 3'UTR 0.66 TCGA-4R-AA8I-01 10 21804625 21804625 G A SKIDA1 Silent p.C709C 0.27 TCGA-4R-AA8I-01 10 22634538 22634538 G A SPAG6 5'UTR 0.47 TCGA-4R-AA8I-01 10 23326257 23326257 C T ARMC3 Missense_Mutation p.A823V 0.39 deleterious(0) probably_damaging(0.976) TCGA-4R-AA8I-01 10 25315214 25315214 A T THNSL1 3'UTR 0.38 TCGA-4R-AA8I-01 10 27538166 27538166 G T RP11-85G18.6 Intron 0.41 TCGA-4R-AA8I-01 10 27822854 27822854 T C RAB18 Intron 0.31 TCGA-4R-AA8I-01 10 29769474 29769474 C T SVIL Missense_Mutation p.S1790N 0.37 deleterious(0.03) possibly_damaging(0.566) TCGA-4R-AA8I-01 10 32581987 32581987 G A EPC1 Nonsense_Mutation p.R199* 0.38 TCGA-4R-AA8I-01 10 35456514 35456514 T C CREM Intron 0.37 TCGA-4R-AA8I-01 10 37447483 37447483 A G ANKRD30A Silent p.L567L 0.42 TCGA-4R-AA8I-01 10 45924153 45924153 G A ALOX5 Missense_Mutation p.A308T 0.33 deleterious(0.01) possibly_damaging(0.898) TCGA-4R-AA8I-01 10 48388542 48388542 A G RBP3 Missense_Mutation p.V779A 0.39 deleterious(0) benign(0.004) TCGA-4R-AA8I-01 10 48414329 48414329 T C GDF2 Missense_Mutation p.D180G 0.39 tolerated(0.21) benign(0.023) TCGA-4R-AA8I-01 10 48438891 48438891 G A GDF10 5'UTR 0.41 TCGA-4R-AA8I-01 10 49628362 49628362 C T MAPK8 Silent p.N205N 0.07 TCGA-4R-AA8I-01 10 50854625 50854625 G A CHAT Missense_Mutation p.V396M 0.47 tolerated(0.16) benign(0.004) TCGA-4R-AA8I-01 10 52587939 52587939 A G A1CF Missense_Mutation p.S249P 0.31 tolerated(0.08) benign(0.017) TCGA-4R-AA8I-01 10 53458564 53458564 T A CSTF2T Missense_Mutation p.D249V 0.37 deleterious(0) probably_damaging(0.991) TCGA-4R-AA8I-01 10 5827986 5827986 C T GDI2 Missense_Mutation p.R139H 0.35 deleterious(0) benign(0.067) TCGA-4R-AA8I-01 10 69672422 69672422 A G SIRT1 Missense_Mutation p.T517A 0.42 tolerated(0.74) benign(0.071) TCGA-4R-AA8I-01 10 70673927 70673927 A G DDX50 Silent p.G352G 0.38 TCGA-4R-AA8I-01 10 71912317 71912317 C T SAR1A Missense_Mutation p.R171H 0.47 tolerated(0.06) benign(0.307) TCGA-4R-AA8I-01 10 73767711 73767711 G A CHST3 Missense_Mutation p.A308T 0.46 deleterious(0.03) possibly_damaging(0.814) TCGA-4R-AA8I-01 10 7608361 7608361 A G ITIH5 Missense_Mutation p.V720A 0.61 deleterious(0.02) possibly_damaging(0.868) TCGA-4R-AA8I-01 10 76784946 76784949 ACAA - KAT6B Frame_Shift_Del p.T1203Rfs*21 0.36 TCGA-4R-AA8I-01 10 76797815 76797815 C T DUPD1 Missense_Mutation p.V148I 0.36 deleterious(0) benign(0.145) TCGA-4R-AA8I-01 10 76990773 76990773 T C VDAC2 3'UTR 0.41 TCGA-4R-AA8I-01 10 77159849 77159849 C - ZNF503 Frame_Shift_Del p.G200Afs*95 0.28 TCGA-4R-AA8I-01 10 81065903 81065903 C T ZMIZ1 Missense_Mutation p.P824S 0.32 probably_damaging(0.998) TCGA-4R-AA8I-01 10 88197700 88197700 A T WAPAL Missense_Mutation p.F1162I 0.32 deleterious(0) probably_damaging(0.994) TCGA-4R-AA8I-01 10 88492735 88492735 C T LDB3 3'UTR 0.43 TCGA-4R-AA8I-01 10 91152426 91152426 G A IFIT1 5'UTR 0.44 TCGA-4R-AA8I-01 10 91371568 91371568 C A PANK1 Missense_Mutation p.S314I 0.39 deleterious(0.01) possibly_damaging(0.852) TCGA-4R-AA8I-01 10 91403637 91403637 A G PANK1 Intron 0.41 TCGA-4R-AA8I-01 10 91520371 91520371 A T KIF20B Missense_Mutation p.E1550V 0.38 deleterious(0.01) benign(0.299) TCGA-4R-AA8I-01 10 92675939 92675939 C T ANKRD1 Missense_Mutation p.A214T 0.22 tolerated(0.11) benign(0.052) TCGA-4R-AA8I-01 10 94050978 94050978 A T MARCH5 5'UTR 0.62 TCGA-4R-AA8I-01 10 96117098 96117098 A - NOC3L Intron 0.20 TCGA-4R-AA8I-01 10 96443560 96443564 AAGAA - CYP2C18 5'UTR 0.46 TCGA-4R-AA8I-01 10 97923204 97923204 T G ZNF518A RNA 0.25 TCGA-4R-AA8I-01 10 97923449 97923449 A - ZNF518A RNA 0.29 TCGA-4R-AA8I-01 10 99131898 99131898 C G RRP12 Missense_Mutation p.A759P 0.21 deleterious(0.01) probably_damaging(0.928) TCGA-4R-AA8I-01 11 1015776 1015776 G A MUC6 Missense_Mutation p.T2342M 0.39 unknown(0) TCGA-4R-AA8I-01 11 101852668 101852668 A G KIAA1377 Missense_Mutation p.T1003A 0.44 tolerated(0.08) possibly_damaging(0.716) TCGA-4R-AA8I-01 11 102482511 102482511 A T MMP20 Missense_Mutation p.D166E 0.44 deleterious(0) probably_damaging(0.987) TCGA-4R-AA8I-01 11 107325228 107325228 T - CWF19L2 Frame_Shift_Del p.K96Rfs*41 0.31 TCGA-4R-AA8I-01 11 108381176 108381176 G A EXPH5 Silent p.H1686H 0.45 TCGA-4R-AA8I-01 11 110104137 110104137 G - RDX Frame_Shift_Del p.P471Lfs*35 0.30 TCGA-4R-AA8I-01 11 111225251 111225251 T C POU2AF1 Missense_Mutation p.E169G 0.39 deleterious(0.03) probably_damaging(0.999) TCGA-4R-AA8I-01 11 113238977 113238977 G A TTC12 3'Flank 0.50 TCGA-4R-AA8I-01 11 113609090 113609090 G A ZW10 Missense_Mutation p.R594W 0.45 deleterious(0) benign(0.407) TCGA-4R-AA8I-01 11 118377321 118377321 A G KMT2A Missense_Mutation p.I3572V 0.43 benign(0.001) TCGA-4R-AA8I-01 11 118765376 118765376 C A BCL9L 3'UTR 0.33 TCGA-4R-AA8I-01 11 118779169 118779169 G A BCL9L Silent p.G74G 0.38 TCGA-4R-AA8I-01 11 119169140 119169140 A T CBL Missense_Mutation p.D775V 0.45 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-4R-AA8I-01 11 121039544 121039544 C T TECTA Missense_Mutation p.A1970V 0.12 tolerated(0.23) benign(0.003) TCGA-4R-AA8I-01 11 121500414 121500414 A G SORL1 3'UTR 0.37 TCGA-4R-AA8I-01 11 123754903 123754903 G - TMEM225 Frame_Shift_Del p.W115Gfs*10 0.24 TCGA-4R-AA8I-01 11 124294491 124294491 A G OR8B4 Missense_Mutation p.Y93H 0.40 tolerated_low_confidence(0.09) probably_damaging(0.996) TCGA-4R-AA8I-01 11 124509754 124509754 C T SIAE Missense_Mutation p.D326N 0.32 tolerated(0.32) benign(0.004) TCGA-4R-AA8I-01 11 124791252 124791252 C T HEPACAM Missense_Mutation p.A345T 0.42 tolerated(0.49) benign(0) TCGA-4R-AA8I-01 11 125514027 125514027 G A CHEK1 Missense_Mutation p.R322H 0.42 tolerated(0.16) benign(0.302) TCGA-4R-AA8I-01 11 128936699 128936699 A C ARHGAP32 Missense_Mutation p.L185R 0.44 tolerated(0.22) probably_damaging(0.998) TCGA-4R-AA8I-01 11 129734929 129734929 T C NFRKB Missense_Mutation p.N1261D 0.44 deleterious_low_confidence(0) possibly_damaging(0.79) TCGA-4R-AA8I-01 11 130784447 130784447 G A SNX19 Missense_Mutation p.A463V 0.34 tolerated(0.22) benign(0.049) TCGA-4R-AA8I-01 11 133814238 133814238 C T IGSF9B Missense_Mutation p.A96T 0.36 tolerated(0.1) possibly_damaging(0.544) TCGA-4R-AA8I-01 11 14264943 14264943 G A SPON1 Splice_Site 0.43 TCGA-4R-AA8I-01 11 20119177 20119177 G A NAV2 Missense_Mutation p.V2082I 0.35 tolerated(1) probably_damaging(0.99) TCGA-4R-AA8I-01 11 21135203 21135203 T C NELL1 Silent p.L457L 0.40 TCGA-4R-AA8I-01 11 216570 216570 C T SIRT3 3'UTR 0.09 TCGA-4R-AA8I-01 11 22360029 22360029 C A SLC17A6 5'UTR 0.38 TCGA-4R-AA8I-01 11 2905227 2905227 A G CDKN1C Splice_Site 0.42 TCGA-4R-AA8I-01 11 294325 294325 A C ATHL1 Missense_Mutation p.S623R 0.44 tolerated(0.53) benign(0.002) TCGA-4R-AA8I-01 11 3026609 3026612 TCTC - CARS Frame_Shift_Del p.R734Kfs*32 0.41 TCGA-4R-AA8I-01 11 30354502 30354502 A G ARL14EP Silent p.K172K 0.44 TCGA-4R-AA8I-01 11 30435807 30435807 G A MPPED2 Missense_Mutation p.P245L 0.41 deleterious(0) probably_damaging(0.998) TCGA-4R-AA8I-01 11 3848965 3848965 G A RHOG Missense_Mutation p.A135V 0.38 tolerated(0.16) benign(0.002) TCGA-4R-AA8I-01 11 45241211 45241211 C T PRDM11 Silent p.I215I 0.30 TCGA-4R-AA8I-01 11 45944631 45944631 C T GYLTL1B Silent p.A66A 0.11 TCGA-4R-AA8I-01 11 47238524 47238524 T C DDB2 Missense_Mutation p.V127A 0.08 deleterious(0) benign(0.332) TCGA-4R-AA8I-01 11 47376855 47376855 T C SPI1 Missense_Mutation p.K247E 0.22 deleterious(0) possibly_damaging(0.693) TCGA-4R-AA8I-01 11 47611408 47611408 C T C1QTNF4 Missense_Mutation p.A319T 0.45 tolerated_low_confidence(0.5) benign(0.141) TCGA-4R-AA8I-01 11 47612245 47612245 G - C1QTNF4 Frame_Shift_Del p.L40Wfs*9 0.24 TCGA-4R-AA8I-01 11 47689211 47689211 T - AGBL2 Frame_Shift_Del p.K751Rfs*19 0.46 TCGA-4R-AA8I-01 11 47701557 47701557 G - AGBL2 Frame_Shift_Del p.L662Ffs*10 0.27 TCGA-4R-AA8I-01 11 55371494 55371494 T A OR4C11 Missense_Mutation p.D119V 0.40 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 11 554999 554999 T C C11orf35 Missense_Mutation p.D629G 0.29 deleterious(0.01) possibly_damaging(0.828) TCGA-4R-AA8I-01 11 55541296 55541296 T - OR5D13 Frame_Shift_Del p.C129Vfs*27 0.27 TCGA-4R-AA8I-01 11 55579121 55579121 A T OR5L1 Missense_Mutation p.Y60F 0.40 deleterious(0) probably_damaging(0.933) TCGA-4R-AA8I-01 11 55587264 55587264 C - OR5D18 Frame_Shift_Del p.K55Nfs*30 0.18 TCGA-4R-AA8I-01 11 55606628 55606628 A G OR5D16 Missense_Mutation p.Y134C 0.44 deleterious(0.01) possibly_damaging(0.637) TCGA-4R-AA8I-01 11 55860942 55860942 T G OR8I2 Silent p.S53S 0.50 TCGA-4R-AA8I-01 11 55890135 55890135 G A OR8H3 Missense_Mutation p.G96D 0.06 deleterious(0.02) benign(0.078) TCGA-4R-AA8I-01 11 56432083 56432083 A G OR5AR1 Missense_Mutation p.K308E 0.40 tolerated(0.15) benign(0.002) TCGA-4R-AA8I-01 11 57155302 57155302 G A PRG2 Missense_Mutation p.R179C 0.41 tolerated(0.29) possibly_damaging(0.727) TCGA-4R-AA8I-01 11 57428633 57428633 C A CLP1 Missense_Mutation p.P335T 0.45 deleterious(0) probably_damaging(0.996) TCGA-4R-AA8I-01 11 59856152 59856152 C A MS4A2 5'UTR 0.68 TCGA-4R-AA8I-01 11 60899319 60899319 C T VPS37C Silent p.P347P 0.40 TCGA-4R-AA8I-01 11 609548 609548 G A PHRF1 Silent p.A1363A 0.33 TCGA-4R-AA8I-01 11 610607 610607 C T PHRF1 Missense_Mutation p.P1507L 0.43 deleterious(0) benign(0.019) TCGA-4R-AA8I-01 11 61062632 61062632 G A VWCE 5'UTR 0.30 TCGA-4R-AA8I-01 11 61102079 61102100 CCCACTCCTGCAGGTGCTGCTG T DAK Splice_Site 0.51 TCGA-4R-AA8I-01 11 61249285 61249285 A T PPP1R32 Missense_Mutation p.M2L 0.37 deleterious(0.05) benign(0.027) TCGA-4R-AA8I-01 11 61404149 61404149 G A RPLP0P2 RNA 0.44 TCGA-4R-AA8I-01 11 61563849 61563849 G A FEN1 Missense_Mutation p.R339H 0.37 deleterious(0) probably_damaging(0.993) TCGA-4R-AA8I-01 11 62190625 62190625 C T SCGB1A1 3'UTR 0.38 TCGA-4R-AA8I-01 11 62303477 62303477 C T AHNAK Missense_Mutation p.V32I 0.51 probably_damaging(0.941) TCGA-4R-AA8I-01 11 62370721 62370721 T G EML3 Splice_Site p.X753_splice 0.42 TCGA-4R-AA8I-01 11 62557912 62557912 T G TMEM223 3'UTR 0.18 TCGA-4R-AA8I-01 11 62677349 62677349 G A CHRM1 Silent p.Y408Y 0.35 TCGA-4R-AA8I-01 11 64556956 64556956 C T MAP4K2 3'UTR 0.46 TCGA-4R-AA8I-01 11 64557055 64557055 G A MAP4K2 Missense_Mutation p.A806V 0.25 deleterious(0.02) benign(0.35) TCGA-4R-AA8I-01 11 64592001 64592001 C T CDC42BPG Missense_Mutation p.V1534I 0.38 tolerated_low_confidence(0.14) benign(0.026) TCGA-4R-AA8I-01 11 64621800 64621800 C T EHD1 3'UTR 0.38 TCGA-4R-AA8I-01 11 64622239 64622239 C T EHD1 Missense_Mutation p.A391T 0.33 tolerated(0.16) benign(0.009) TCGA-4R-AA8I-01 11 64813529 64813529 C T NAALADL1 Missense_Mutation p.R638H 0.39 tolerated(0.39) benign(0.005) TCGA-4R-AA8I-01 11 65426225 65426225 C A RELA Missense_Mutation p.D210Y 0.63 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 11 66319034 66319034 C T ACTN3 3'UTR 0.35 TCGA-4R-AA8I-01 11 66411228 66411228 C T RBM14-RBM4 Silent p.S215S 0.48 TCGA-4R-AA8I-01 11 67069033 67069033 C T ANKRD13D Missense_Mutation p.R475C 0.41 deleterious(0) probably_damaging(0.997) TCGA-4R-AA8I-01 11 67141155 67141155 T C CLCF1 5'UTR 0.41 TCGA-4R-AA8I-01 11 68772834 68772834 C T MRGPRF Missense_Mutation p.R315Q 0.36 tolerated(0.4) probably_damaging(0.994) TCGA-4R-AA8I-01 11 6891212 6891212 A T OR10A2 Missense_Mutation p.D76V 0.04 deleterious(0.02) benign(0.421) TCGA-4R-AA8I-01 11 70332826 70332826 G A SHANK2 Missense_Mutation p.A1192V 0.41 tolerated(0.4) benign(0.005) TCGA-4R-AA8I-01 11 70653124 70653124 C T SHANK2 Missense_Mutation p.R550H 0.42 deleterious(0) benign(0.33) TCGA-4R-AA8I-01 11 721123 721123 C T EPS8L2 Missense_Mutation p.A206V 0.14 tolerated(0.08) benign(0.283) TCGA-4R-AA8I-01 11 72437830 72437830 G - ARAP1 Frame_Shift_Del p.P115Hfs*39 0.25 TCGA-4R-AA8I-01 11 73675956 73675956 T A DNAJB13 Nonsense_Mutation p.L123* 0.29 TCGA-4R-AA8I-01 11 73801915 73801915 C T C2CD3 Missense_Mutation p.R1195Q 0.41 tolerated(0.4) benign(0.292) TCGA-4R-AA8I-01 11 74984011 74984011 C T ARRB1 Missense_Mutation p.G309D 0.41 deleterious(0.05) benign(0.201) TCGA-4R-AA8I-01 11 76751049 76751049 C T B3GNT6 Missense_Mutation p.R152C 0.29 deleterious(0.02) probably_damaging(0.966) TCGA-4R-AA8I-01 11 76919769 76919769 T C MYO7A Missense_Mutation p.V1991A 0.47 deleterious(0) benign(0.223) TCGA-4R-AA8I-01 11 77411876 77411876 T - RSF1 Frame_Shift_Del p.R800Efs*24 0.31 TCGA-4R-AA8I-01 11 77412511 77412511 A G RSF1 Missense_Mutation p.L588S 0.37 tolerated_low_confidence(0.16) benign(0.011) TCGA-4R-AA8I-01 11 77930356 77930356 G A GAB2 Missense_Mutation p.R665W 0.39 deleterious(0) possibly_damaging(0.823) TCGA-4R-AA8I-01 11 792953 792953 C T SLC25A22 Missense_Mutation p.G110D 0.46 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 11 8159886 8159887 - T RIC3 Frame_Shift_Ins p.K122Efs*25 0.31 TCGA-4R-AA8I-01 11 86126223 86126223 A G CCDC81 Missense_Mutation p.E520G 0.37 deleterious(0.03) benign(0.019) TCGA-4R-AA8I-01 11 8642705 8642705 G - TRIM66 Frame_Shift_Del p.P993Qfs*4 0.26 TCGA-4R-AA8I-01 11 86663625 86663625 T A FZD4 Intron 0.67 TCGA-4R-AA8I-01 11 8751983 8751983 A G ST5 Missense_Mutation p.I285T 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-4R-AA8I-01 11 9161225 9161225 T G DENND5A Missense_Mutation p.D1286A 0.33 deleterious(0.01) benign(0.24) TCGA-4R-AA8I-01 11 93429945 93429945 A G KIAA1731 Missense_Mutation p.I623V 0.25 tolerated(0.49) benign(0.03) TCGA-4R-AA8I-01 11 93530776 93530776 C T MED17 Missense_Mutation p.L407F 0.29 tolerated(0.07) benign(0.17) TCGA-4R-AA8I-01 11 94113391 94113391 T C GPR83 Missense_Mutation p.N399S 0.36 tolerated(0.88) benign(0.001) TCGA-4R-AA8I-01 11 94277071 94277071 G A FUT4 5'UTR 0.24 TCGA-4R-AA8I-01 11 9435806 9435806 A - IPO7 Frame_Shift_Del p.K163Nfs*9 0.19 TCGA-4R-AA8I-01 11 94800490 94800490 T A SRSF8 Missense_Mutation p.F34I 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-4R-AA8I-01 11 95562468 95562468 A G CEP57 Missense_Mutation p.I415M 0.05 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 11 95580973 95580973 A T MTMR2 Missense_Mutation p.S362T 0.30 deleterious(0) probably_damaging(0.988) TCGA-4R-AA8I-01 11 96092336 96092336 T C CCDC82 Missense_Mutation p.T463A 0.38 tolerated(0.7) benign(0.03) TCGA-4R-AA8I-01 11 972110 972110 C T AP2A2 Missense_Mutation p.R110C 0.45 deleterious(0.03) probably_damaging(0.955) TCGA-4R-AA8I-01 11 9830557 9830557 A G SBF2 Intron 0.29 TCGA-4R-AA8I-01 12 100708368 100708368 A G SCYL2 Silent p.P357P 0.40 TCGA-4R-AA8I-01 12 101777019 101777019 G A UTP20 Silent p.L2619L 0.08 TCGA-4R-AA8I-01 12 102591388 102591388 G A PMCH Missense_Mutation p.A54V 0.19 tolerated(0.24) benign(0.001) TCGA-4R-AA8I-01 12 104476618 104476618 T C HCFC2 Silent p.D334D 0.39 TCGA-4R-AA8I-01 12 105538180 105538180 T - KIAA1033 Frame_Shift_Del p.F711Sfs*3 0.26 TCGA-4R-AA8I-01 12 108685651 108685651 A G CMKLR1 Silent p.T363T 0.41 TCGA-4R-AA8I-01 12 114397139 114397139 G A RBM19 Missense_Mutation p.A150V 0.39 deleterious(0.03) benign(0.082) TCGA-4R-AA8I-01 12 116420407 116420407 C T MED13L Missense_Mutation p.V1653I 0.37 deleterious(0.02) benign(0.32) TCGA-4R-AA8I-01 12 118848915 118848915 G A SUDS3 Missense_Mutation p.D281N 0.30 deleterious(0) benign(0.156) TCGA-4R-AA8I-01 12 120151400 120151400 C T CIT Missense_Mutation p.G1454S 0.37 deleterious(0) possibly_damaging(0.878) TCGA-4R-AA8I-01 12 121157763 121157763 C A UNC119B Missense_Mutation p.D228E 0.42 deleterious(0.02) probably_damaging(0.997) TCGA-4R-AA8I-01 12 122247883 122247883 C T SETD1B Silent p.A344A 0.49 TCGA-4R-AA8I-01 12 122693101 122693101 C T DIABLO Missense_Mutation p.A183T 0.49 tolerated(0.09) benign(0.186) TCGA-4R-AA8I-01 12 12300444 12300444 G A LRP6 Missense_Mutation p.R1085W 0.34 deleterious(0) probably_damaging(0.997) TCGA-4R-AA8I-01 12 124115056 124115056 G A EIF2B1 Missense_Mutation p.A47V 0.02 tolerated(0.2) benign(0) TCGA-4R-AA8I-01 12 124403305 124403305 G - DNAH10 Frame_Shift_Del p.A3656Pfs*13 0.20 TCGA-4R-AA8I-01 12 12633224 12633224 G A DUSP16 Missense_Mutation p.R250C 0.36 deleterious(0.04) probably_damaging(0.991) TCGA-4R-AA8I-01 12 132323183 132323183 A C MMP17 Missense_Mutation p.T107P 0.45 deleterious(0.01) probably_damaging(0.987) TCGA-4R-AA8I-01 12 132905784 132905784 C T RP13-895J2.7 5'Flank 0.44 TCGA-4R-AA8I-01 12 133151138 133151138 G A FBRSL1 Silent p.Q606Q 0.38 TCGA-4R-AA8I-01 12 14929564 14929564 A - H2AFJ 3'UTR 0.29 TCGA-4R-AA8I-01 12 15134548 15134548 C A PDE6H 3'UTR 0.36 TCGA-4R-AA8I-01 12 15262428 15262428 C T RERG Silent p.G72G 0.40 TCGA-4R-AA8I-01 12 20968682 20968682 C A LST3 Missense_Mutation p.H4N 0.57 tolerated(0.68) benign(0) TCGA-4R-AA8I-01 12 26275589 26275590 - GCT BHLHE41 In_Frame_Ins p.G286_G287insS 0.36 TCGA-4R-AA8I-01 12 27850383 27850383 A - REP15 3'UTR 0.21 TCGA-4R-AA8I-01 12 29493940 29493940 T - ERGIC2 3'UTR 0.17 TCGA-4R-AA8I-01 12 30863317 30863317 C T CAPRIN2 Missense_Mutation p.R918H 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-4R-AA8I-01 12 3131073 3131073 G A TEAD4 Missense_Mutation p.E263K 0.46 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 12 32793225 32793225 G A FGD4 Missense_Mutation p.A687T 0.37 tolerated(0.84) benign(0.021) TCGA-4R-AA8I-01 12 40441899 40441899 T G SLC2A13 Missense_Mutation p.S224R 0.51 deleterious(0) possibly_damaging(0.908) TCGA-4R-AA8I-01 12 40677697 40677697 T A LRRK2 Missense_Mutation p.S754R 0.43 tolerated(0.12) possibly_damaging(0.691) TCGA-4R-AA8I-01 12 40941584 40941584 G A MUC19 3'UTR 0.24 TCGA-4R-AA8I-01 12 44161948 44161948 C T IRAK4 Missense_Mutation p.R12C 0.18 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 12 45725118 45725118 A T ANO6 Missense_Mutation p.D85V 0.41 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 12 46760702 46760702 T C SLC38A2 Missense_Mutation p.K170E 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-4R-AA8I-01 12 48579709 48579709 C A C12orf68 3'UTR 0.33 TCGA-4R-AA8I-01 12 49427950 49427950 C T KMT2D Missense_Mutation p.R3547H 0.50 probably_damaging(0.984) TCGA-4R-AA8I-01 12 50367033 50367033 C T AQP6 Missense_Mutation p.A26V 0.25 deleterious(0) probably_damaging(0.954) TCGA-4R-AA8I-01 12 50368266 50368266 G T AQP6 Splice_Site p.X187_splice 0.52 TCGA-4R-AA8I-01 12 50537820 50537820 G A CERS5 Missense_Mutation p.A73V 0.14 deleterious(0) benign(0.411) TCGA-4R-AA8I-01 12 51512404 51512404 C A TFCP2 Nonsense_Mutation p.G92* 0.17 TCGA-4R-AA8I-01 12 51663059 51663059 T C SMAGP Missense_Mutation p.T2A 0.36 tolerated_low_confidence(0.16) benign(0.001) TCGA-4R-AA8I-01 12 52448156 52448156 C T NR4A1 Missense_Mutation p.P28L 0.15 deleterious(0.04) probably_damaging(0.997) TCGA-4R-AA8I-01 12 52799999 52799999 C T KRT82 Silent p.S21S 0.06 TCGA-4R-AA8I-01 12 53041638 53041638 T C KRT2 Missense_Mutation p.Y375C 0.42 deleterious(0) probably_damaging(0.995) TCGA-4R-AA8I-01 12 53552232 53552232 A G CSAD 3'UTR 0.20 TCGA-4R-AA8I-01 12 56575357 56575357 G A SMARCC2 Missense_Mutation p.R289W 0.39 deleterious(0) possibly_damaging(0.689) TCGA-4R-AA8I-01 12 56733288 56733288 G T IL23A Nonsense_Mutation p.G81* 0.28 TCGA-4R-AA8I-01 12 56755672 56755672 A C APOF Silent p.A106A 0.07 TCGA-4R-AA8I-01 12 56814391 56814391 A G TIMELESS Silent p.L1064L 0.43 TCGA-4R-AA8I-01 12 57351324 57351324 A G RDH16 5'UTR 0.39 TCGA-4R-AA8I-01 12 57556223 57556223 C - LRP1 Frame_Shift_Del p.T778Lfs*2 0.31 TCGA-4R-AA8I-01 12 57865761 57865761 C - GLI1 Frame_Shift_Del p.N1082Tfs*7 0.32 TCGA-4R-AA8I-01 12 58001004 58001004 G A DTX3 Missense_Mutation p.A120T 0.37 tolerated_low_confidence(0.55) benign(0.016) TCGA-4R-AA8I-01 12 6128578 6128578 G A VWF Nonsense_Mutation p.R1336* 0.40 TCGA-4R-AA8I-01 12 62785110 62785110 T C USP15 Missense_Mutation p.F712L 0.38 deleterious(0) probably_damaging(0.919) TCGA-4R-AA8I-01 12 62938760 62938760 A G MON2 Missense_Mutation p.N850S 0.40 tolerated(0.13) benign(0.001) TCGA-4R-AA8I-01 12 62996534 62996534 A G C12orf61 3'UTR 0.38 TCGA-4R-AA8I-01 12 63541343 63541343 A - AVPR1A Frame_Shift_Del p.F351Lfs*19 0.26 TCGA-4R-AA8I-01 12 6562348 6562348 C A TAPBPL Silent p.A60A 0.35 TCGA-4R-AA8I-01 12 6657862 6657862 C T IFFO1 Missense_Mutation p.E404K 0.32 deleterious(0.01) possibly_damaging(0.808) TCGA-4R-AA8I-01 12 69145879 69145879 T C SLC35E3 Missense_Mutation p.M194T 0.42 deleterious(0) benign(0.071) TCGA-4R-AA8I-01 12 70188991 70188991 C T RAB3IP Missense_Mutation p.T268M 0.33 tolerated(0.1) benign(0.022) TCGA-4R-AA8I-01 12 7069305 7069305 G A PTPN6 Missense_Mutation p.R495H 0.14 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 12 70824288 70824288 G A KCNMB4 Missense_Mutation p.R163H 0.41 deleterious(0.03) probably_damaging(0.994) TCGA-4R-AA8I-01 12 7188073 7188074 - T C1R Frame_Shift_Ins p.N576Efs*2 0.27 TCGA-4R-AA8I-01 12 7310658 7310658 C - CLSTN3 Frame_Shift_Del p.P953Hfs*106 0.29 TCGA-4R-AA8I-01 12 75816843 75816843 T - GLIPR1L2 Intron 0.25 TCGA-4R-AA8I-01 12 76740856 76740856 A G BBS10 Silent p.S303S 0.38 TCGA-4R-AA8I-01 12 77417817 77417817 A T E2F7 Missense_Mutation p.I905N 0.49 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 12 7900021 7900021 T A CLEC4C 5'UTR 0.47 TCGA-4R-AA8I-01 12 80328745 80328745 G - PPP1R12A 5'UTR 0.24 TCGA-4R-AA8I-01 12 8375067 8375067 C T FAM90A1 Missense_Mutation p.G249D 0.15 deleterious(0) possibly_damaging(0.779) TCGA-4R-AA8I-01 12 86276037 86276037 A - NTS Frame_Shift_Del p.N134Mfs*7 0.24 TCGA-4R-AA8I-01 12 88582677 88582677 A G TMTC3 Missense_Mutation p.K497R 0.24 tolerated(0.19) benign(0.005) TCGA-4R-AA8I-01 12 91497984 91497984 C A LUM Missense_Mutation p.M325I 0.44 tolerated(0.37) benign(0.003) TCGA-4R-AA8I-01 12 96617510 96617510 T C ELK3 Missense_Mutation p.Y56H 0.45 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 12 97345891 97345891 C T NEDD1 3'UTR 0.44 TCGA-4R-AA8I-01 13 103384583 103384583 G A CCDC168 Missense_Mutation p.P1526L 0.43 tolerated(0.24) unknown(0) TCGA-4R-AA8I-01 13 103441481 103441481 A G KDELC1 Missense_Mutation p.S392P 0.49 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 13 110864792 110864792 G - COL4A1 Frame_Shift_Del p.P120Qfs*36 0.31 TCGA-4R-AA8I-01 13 111857659 111857659 T C ARHGEF7 Silent p.Y113Y 0.03 TCGA-4R-AA8I-01 13 113718636 113718636 G A MCF2L Missense_Mutation p.V170I 0.25 deleterious(0.04) benign(0.206) TCGA-4R-AA8I-01 13 114784388 114784388 G T RASA3 Missense_Mutation p.L265I 0.47 deleterious(0) probably_damaging(0.99) TCGA-4R-AA8I-01 13 24413824 24413824 G A MIPEP Silent p.Y434Y 0.69 TCGA-4R-AA8I-01 13 24413861 24413861 A G MIPEP Missense_Mutation p.V422A 0.61 deleterious(0.03) probably_damaging(0.951) TCGA-4R-AA8I-01 13 24858385 24858385 C T SPATA13 Silent p.G759G 0.17 TCGA-4R-AA8I-01 13 35615180 35615180 A T NBEA Missense_Mutation p.E135D 0.83 deleterious(0) probably_damaging(0.997) TCGA-4R-AA8I-01 13 43843689 43843689 A C ENOX1 Missense_Mutation p.L491V 0.79 tolerated(0.08) probably_damaging(0.994) TCGA-4R-AA8I-01 13 60971456 60971456 C - TDRD3 5'UTR 0.43 TCGA-4R-AA8I-01 13 67799558 67799558 C A PCDH9 Missense_Mutation p.K1005N 0.46 tolerated(0.41) benign(0.446) TCGA-4R-AA8I-01 13 86369655 86369655 G - SLITRK6 Frame_Shift_Del p.P330Lfs*15 0.28 TCGA-4R-AA8I-01 13 96239850 96239850 C T DZIP1 Missense_Mutation p.A721T 0.40 tolerated(1) benign(0.001) TCGA-4R-AA8I-01 13 96274617 96274617 T C DZIP1 Missense_Mutation p.M364V 0.22 tolerated(0.64) benign(0.018) TCGA-4R-AA8I-01 13 99449441 99449441 G A DOCK9 Silent p.L2042L 0.36 TCGA-4R-AA8I-01 14 100744020 100744020 A T YY1 3'UTR 0.42 TCGA-4R-AA8I-01 14 101004134 101004134 C T BEGAIN 3'UTR 0.29 TCGA-4R-AA8I-01 14 101518802 101518802 T A MIR487A RNA 0.31 TCGA-4R-AA8I-01 14 102675272 102675272 C T WDR20 Silent p.H286H 0.06 TCGA-4R-AA8I-01 14 105168020 105168020 C T INF2 Silent p.R106R 0.23 TCGA-4R-AA8I-01 14 20757848 20757848 T A TTC5 Nonsense_Mutation p.K421* 0.35 TCGA-4R-AA8I-01 14 20767596 20767597 TT - TTC5 Frame_Shift_Del p.K136Sfs*16 0.11 TCGA-4R-AA8I-01 14 21511475 21511475 G A RNASE7 Missense_Mutation p.M108I 0.43 tolerated(0.39) benign(0) TCGA-4R-AA8I-01 14 21560611 21560611 C A ZNF219 Missense_Mutation p.S282I 0.39 tolerated(0.12) probably_damaging(0.993) TCGA-4R-AA8I-01 14 22133945 22133945 T A OR4E2 Missense_Mutation p.S217T 0.05 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 14 23315224 23315224 G A MMP14 Silent p.Q575Q 0.24 TCGA-4R-AA8I-01 14 23652042 23652042 C G SLC7A8 Missense_Mutation p.G28R 0.34 tolerated(0.18) benign(0.001) TCGA-4R-AA8I-01 14 23821160 23821160 G A SLC22A17 Silent p.G88G 0.39 TCGA-4R-AA8I-01 14 23863388 23863388 G A MYH6 Silent p.F858F 0.49 TCGA-4R-AA8I-01 14 24470144 24470144 T - DHRS4L2 Splice_Site p.X160_splice 0.14 TCGA-4R-AA8I-01 14 24542179 24542179 C G CPNE6 Missense_Mutation p.P12A 0.35 tolerated(0.08) benign(0.012) TCGA-4R-AA8I-01 14 24654474 24654474 G A IPO4 Silent p.L441L 0.39 TCGA-4R-AA8I-01 14 24805599 24805599 G A RIPK3 Nonsense_Mutation p.R447* 0.45 TCGA-4R-AA8I-01 14 24806911 24806911 G A RIPK3 Missense_Mutation p.A297V 0.34 deleterious(0) probably_damaging(0.969) TCGA-4R-AA8I-01 14 24877520 24877520 A G NYNRIN Missense_Mutation p.H215R 0.44 tolerated_low_confidence(0.49) benign(0) TCGA-4R-AA8I-01 14 28734126 28734126 G A BNIP3P1 RNA 0.23 TCGA-4R-AA8I-01 14 31926576 31926576 A C DTD2 Silent p.P8P 0.41 TCGA-4R-AA8I-01 14 44974051 44974051 C T FSCB Missense_Mutation p.V714I 0.36 tolerated(0.23) unknown(0) TCGA-4R-AA8I-01 14 45579384 45579384 A G PRPF39 Missense_Mutation p.M422V 0.36 tolerated(0.12) benign(0.026) TCGA-4R-AA8I-01 14 50295521 50295521 G T NEMF Missense_Mutation p.P413T 0.36 deleterious(0) probably_damaging(0.997) TCGA-4R-AA8I-01 14 50597348 50597348 G A SOS2 Missense_Mutation p.R1070W 0.42 deleterious(0) probably_damaging(0.918) TCGA-4R-AA8I-01 14 50829688 50829688 G A CDKL1 Intron 0.04 TCGA-4R-AA8I-01 14 52781730 52781730 C A PTGER2 Missense_Mutation p.A155D 0.49 deleterious(0) possibly_damaging(0.723) TCGA-4R-AA8I-01 14 53124715 53124715 T C ERO1L Missense_Mutation p.E243G 0.40 deleterious(0) probably_damaging(0.993) TCGA-4R-AA8I-01 14 56094630 56094630 T A KTN1 Missense_Mutation p.S322T 0.40 deleterious(0.03) benign(0.002) TCGA-4R-AA8I-01 14 57051736 57051736 G A TMEM260 Missense_Mutation p.A60T 0.37 deleterious(0) possibly_damaging(0.793) TCGA-4R-AA8I-01 14 57747061 57747061 A G AP5M1 Missense_Mutation p.D290G 0.49 tolerated(0.43) possibly_damaging(0.793) TCGA-4R-AA8I-01 14 59113492 59113492 C T DACT1 Silent p.Y717Y 0.32 TCGA-4R-AA8I-01 14 59114555 59114555 T - DACT1 3'Flank 0.27 TCGA-4R-AA8I-01 14 59950530 59950530 T C L3HYPDH Missense_Mutation p.T169A 0.52 tolerated(0.67) benign(0.011) TCGA-4R-AA8I-01 14 60712564 60712564 G A PPM1A 5'UTR 0.42 TCGA-4R-AA8I-01 14 64921459 64921459 A C MTHFD1 Missense_Mutation p.I862L 0.24 deleterious(0.02) benign(0.121) TCGA-4R-AA8I-01 14 64938265 64938265 T A AKAP5 3'UTR 0.05 TCGA-4R-AA8I-01 14 67864501 67864501 G A PLEK2 Missense_Mutation p.R29W 0.42 tolerated(0.1) possibly_damaging(0.606) TCGA-4R-AA8I-01 14 68189266 68189266 G A RDH12 5'UTR 0.33 TCGA-4R-AA8I-01 14 71199865 71199865 G A MAP3K9 Missense_Mutation p.R755W 0.18 deleterious(0.01) probably_damaging(1) TCGA-4R-AA8I-01 14 74062092 74062092 T C ACOT4 Missense_Mutation p.Y334H 0.27 deleterious(0.04) probably_damaging(0.991) TCGA-4R-AA8I-01 14 74876101 74876101 G A SYNDIG1L Missense_Mutation p.T116I 0.33 tolerated(0.05) benign(0.08) TCGA-4R-AA8I-01 14 75130470 75130470 G A AREL1 Silent p.L809L 0.47 TCGA-4R-AA8I-01 14 75471454 75471454 A G EIF2B2 Missense_Mutation p.N150D 0.41 tolerated(0.11) benign(0.345) TCGA-4R-AA8I-01 14 77580248 77580248 G A CIPC Missense_Mutation p.A263T 0.41 tolerated(0.49) probably_damaging(0.955) TCGA-4R-AA8I-01 14 86088965 86088965 C A FLRT2 Silent p.L369L 0.37 TCGA-4R-AA8I-01 14 86090020 86090020 T C FLRT2 3'UTR 0.42 TCGA-4R-AA8I-01 14 89039079 89039079 A - ZC3H14 Frame_Shift_Del p.K198Nfs*4 0.25 TCGA-4R-AA8I-01 14 91155976 91155976 C T TTC7B Silent p.P286P 0.47 TCGA-4R-AA8I-01 14 91925073 91925073 A G SMEK1 3'UTR 0.19 TCGA-4R-AA8I-01 14 92621569 92621569 T C CPSF2 Silent p.S448S 0.39 TCGA-4R-AA8I-01 14 93180780 93180780 C T LGMN Missense_Mutation p.V141M 0.15 deleterious(0) probably_damaging(0.993) TCGA-4R-AA8I-01 14 93397934 93397934 A C CHGA Missense_Mutation p.E232A 0.41 tolerated(0.08) benign(0.015) TCGA-4R-AA8I-01 14 95669982 95669982 G A CLMN Silent p.S568S 0.37 TCGA-4R-AA8I-01 14 96730967 96730967 C T BDKRB1 Silent p.G316G 0.40 TCGA-4R-AA8I-01 14 96781801 96781801 C T ATG2B Missense_Mutation p.D1161N 0.07 tolerated(0.44) probably_damaging(0.932) TCGA-4R-AA8I-01 14 99183450 99183450 T C C14orf177 Missense_Mutation p.F73L 0.35 deleterious_low_confidence(0) benign(0.002) TCGA-4R-AA8I-01 14 99929899 99929899 C T SETD3 Silent p.A40A 0.37 TCGA-4R-AA8I-01 15 101152549 101152549 G A ASB7 Missense_Mutation p.R43Q 0.43 tolerated(0.32) benign(0.034) TCGA-4R-AA8I-01 15 101929688 101929688 C T PCSK6 Missense_Mutation p.A430T 0.42 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 15 20644303 20644303 C A HERC2P3 RNA 0.21 TCGA-4R-AA8I-01 15 23003033 23003033 G A CYFIP1 Missense_Mutation p.S1252N 0.42 tolerated(0.31) benign(0.008) TCGA-4R-AA8I-01 15 24921255 24921255 C T NPAP1 Missense_Mutation p.P81S 0.41 tolerated(0.37) possibly_damaging(0.803) TCGA-4R-AA8I-01 15 24928271 24928271 T - NPAP1 3'UTR 0.33 TCGA-4R-AA8I-01 15 29406202 29406202 T A APBA2 Missense_Mutation p.S721T 0.41 tolerated(0.19) benign(0.087) TCGA-4R-AA8I-01 15 29429272 29429273 - G FAM189A1 Frame_Shift_Ins p.E253Rfs*9 0.09 TCGA-4R-AA8I-01 15 32908462 32908462 C T ARHGAP11A Missense_Mutation p.A17V 0.38 tolerated(0.26) benign(0.099) TCGA-4R-AA8I-01 15 33954476 33954476 G A RYR3 Missense_Mutation p.S1582N 0.08 probably_damaging(0.947) TCGA-4R-AA8I-01 15 35044813 35044813 G A GJD2 Missense_Mutation p.R278C 0.41 deleterious(0.01) possibly_damaging(0.855) TCGA-4R-AA8I-01 15 39874935 39874935 C T THBS1 Silent p.G203G 0.39 TCGA-4R-AA8I-01 15 39881519 39881519 C T THBS1 Silent p.F630F 0.36 TCGA-4R-AA8I-01 15 39885371 39885371 C T THBS1 Missense_Mutation p.R980C 0.43 deleterious(0.02) probably_damaging(1) TCGA-4R-AA8I-01 15 40660890 40660890 C T DISP2 Silent p.C859C 0.35 TCGA-4R-AA8I-01 15 41804450 41804450 C T LTK Missense_Mutation p.G125R 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-4R-AA8I-01 15 43545733 43545733 C T TGM5 Missense_Mutation p.V219I 0.33 tolerated(0.28) benign(0.058) TCGA-4R-AA8I-01 15 43668752 43668752 C T TUBGCP4 Missense_Mutation p.R87W 0.36 deleterious(0) probably_damaging(0.953) TCGA-4R-AA8I-01 15 43820753 43820753 G A MAP1A Missense_Mutation p.G2361D 0.41 probably_damaging(1) TCGA-4R-AA8I-01 15 45387173 45387173 G A DUOX2 Silent p.T1452T 0.42 TCGA-4R-AA8I-01 15 45413420 45413420 C T DUOXA1 Splice_Site p.X69_splice 0.18 TCGA-4R-AA8I-01 15 45694775 45694775 T C SPATA5L1 Missense_Mutation p.S50P 0.54 tolerated(0.06) benign(0.333) TCGA-4R-AA8I-01 15 45695622 45695622 C A SPATA5L1 Missense_Mutation p.A332D 0.48 deleterious(0.01) benign(0.317) TCGA-4R-AA8I-01 15 48829850 48829850 G A FBN1 Missense_Mutation p.R232C 0.41 probably_damaging(0.999) TCGA-4R-AA8I-01 15 49030737 49030737 G A CEP152 Silent p.S1614S 0.32 TCGA-4R-AA8I-01 15 49584596 49584596 A T GALK2 Missense_Mutation p.I277F 0.35 tolerated(0.08) benign(0.02) TCGA-4R-AA8I-01 15 50331023 50331023 G A ATP8B4 Missense_Mutation p.R102C 0.29 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 15 51741060 51741060 T C DMXL2 3'UTR 0.41 TCGA-4R-AA8I-01 15 58006972 58006972 A G POLR2M 3'UTR 0.16 TCGA-4R-AA8I-01 15 58007033 58007033 G A POLR2M 3'UTR 0.14 TCGA-4R-AA8I-01 15 58936169 58936169 A G ADAM10 Silent p.S248S 0.05 TCGA-4R-AA8I-01 15 59175873 59175873 C T SLTM Missense_Mutation p.R983Q 0.43 deleterious(0) probably_damaging(0.997) TCGA-4R-AA8I-01 15 62234069 62234069 A G VPS13C Silent p.G1782G 0.34 TCGA-4R-AA8I-01 15 62456187 62456187 C T C2CD4B Missense_Mutation p.A333T 0.38 tolerated(0.13) benign(0.003) TCGA-4R-AA8I-01 15 63009820 63009820 G A TLN2 Missense_Mutation p.A937T 0.36 deleterious(0) possibly_damaging(0.892) TCGA-4R-AA8I-01 15 63355067 63355067 A G TPM1 Intron 0.33 TCGA-4R-AA8I-01 15 65111379 65111379 C T PIF1 Silent p.L459L 0.43 TCGA-4R-AA8I-01 15 72338646 72338646 T A MYO9A Missense_Mutation p.M87L 0.42 tolerated(0.93) benign(0.262) TCGA-4R-AA8I-01 15 73344967 73344967 A G NEO1 5'UTR 0.62 TCGA-4R-AA8I-01 15 74337203 74337203 C - PML Frame_Shift_Del p.P836Lfs*52 0.24 TCGA-4R-AA8I-01 15 74426101 74426101 G A ISLR2 Missense_Mutation p.A336T 0.41 tolerated(0.65) benign(0.003) TCGA-4R-AA8I-01 15 74932931 74932931 A G EDC3 Missense_Mutation p.Y284H 0.37 tolerated(0.22) benign(0.041) TCGA-4R-AA8I-01 15 77471265 77471265 C T PEAK1 Missense_Mutation p.V1002M 0.38 tolerated(0.07) benign(0.008) TCGA-4R-AA8I-01 15 77908210 77908210 C A LINGO1 Missense_Mutation p.R13S 0.30 tolerated(0.7) benign(0.045) TCGA-4R-AA8I-01 15 80216041 80216042 - G C15ORF37 Frame_Shift_Ins p.G177Rfs*43 0.23 TCGA-4R-AA8I-01 15 83350208 83350208 C T AP3B2 Missense_Mutation p.R162Q 0.46 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 15 85165006 85165006 A T ZSCAN2 Missense_Mutation p.E527V 0.34 deleterious(0) probably_damaging(0.996) TCGA-4R-AA8I-01 15 85403072 85403072 A G ALPK3 Missense_Mutation p.Y1546C 0.37 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 15 88576093 88576093 T C NTRK3 Missense_Mutation p.D527G 0.40 tolerated(0.08) benign(0.032) TCGA-4R-AA8I-01 15 89173701 89173702 CT - AEN 3'UTR 0.29 TCGA-4R-AA8I-01 15 89449105 89449105 C T MFGE8 Missense_Mutation p.A190T 0.41 tolerated(0.73) benign(0.001) TCGA-4R-AA8I-01 15 89698708 89698708 A G ABHD2 Missense_Mutation p.N161D 0.50 tolerated(0.06) possibly_damaging(0.687) TCGA-4R-AA8I-01 15 90455841 90455841 G T C15orf38 Intron 0.27 TCGA-4R-AA8I-01 15 91769314 91769314 T A SV2B 5'UTR 0.47 TCGA-4R-AA8I-01 16 1033875 1033875 G A SOX8 Silent p.A190A 0.45 TCGA-4R-AA8I-01 16 1034924 1034924 C - SOX8 Frame_Shift_Del p.A295Pfs*149 0.09 TCGA-4R-AA8I-01 16 11981478 11981478 A G GSPT1 Silent p.S302S 0.40 TCGA-4R-AA8I-01 16 14041629 14041629 C T ERCC4 Missense_Mutation p.R726C 0.33 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 16 1464671 1464671 C G UNKL Missense_Mutation p.A8P 0.41 tolerated(0.2) benign(0.004) TCGA-4R-AA8I-01 16 14721031 14721031 A C PARN Missense_Mutation p.S87A 0.38 tolerated(0.45) benign(0.097) TCGA-4R-AA8I-01 16 1592009 1592009 G T TMEM204 Missense_Mutation p.G123V 0.37 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-4R-AA8I-01 16 16177388 16177388 A T ABCC1 Missense_Mutation p.I761F 0.20 deleterious(0) probably_damaging(0.998) TCGA-4R-AA8I-01 16 2011941 2011941 T C NDUFB10 3'UTR 0.27 TCGA-4R-AA8I-01 16 2093714 2093714 T C NTHL1 Missense_Mutation p.Y188C 0.41 deleterious(0) benign(0.397) TCGA-4R-AA8I-01 16 21702950 21702950 C T OTOA Silent p.S227S 0.17 TCGA-4R-AA8I-01 16 21702955 21702955 G A OTOA Missense_Mutation p.R229K 0.18 tolerated(0.23) benign(0.068) TCGA-4R-AA8I-01 16 21721362 21721362 G A OTOA Missense_Mutation p.V420I 0.31 tolerated(0.12) benign(0.309) TCGA-4R-AA8I-01 16 2284330 2284330 G A E4F1 Missense_Mutation p.V512I 0.35 tolerated(0.23) probably_damaging(0.999) TCGA-4R-AA8I-01 16 24580479 24580479 A - RBBP6 Frame_Shift_Del p.E825Nfs*70 0.26 TCGA-4R-AA8I-01 16 27752080 27752080 A G KIAA0556 Missense_Mutation p.N821S 0.38 tolerated(0.73) benign(0.098) TCGA-4R-AA8I-01 16 2818134 2818134 G C SRRM2 Silent p.S2535S 0.28 TCGA-4R-AA8I-01 16 29115241 29115241 A G CTB-134H23.3 RNA 0.31 TCGA-4R-AA8I-01 16 29115257 29115257 T - CTB-134H23.3 RNA 0.29 TCGA-4R-AA8I-01 16 29848108 29848108 G A MVP Silent p.G246G 0.37 TCGA-4R-AA8I-01 16 3063895 3063895 G - CLDN9 Frame_Shift_Del p.L180Sfs*196 0.30 TCGA-4R-AA8I-01 16 30667498 30667498 G - PRR14 Frame_Shift_Del p.G543Afs*25 0.27 TCGA-4R-AA8I-01 16 30727435 30727435 C T SRCAP Nonsense_Mutation p.Q848* 0.34 TCGA-4R-AA8I-01 16 30734920 30734920 C A SRCAP Missense_Mutation p.A1392D 0.35 possibly_damaging(0.665) TCGA-4R-AA8I-01 16 30846187 30846187 C T BCL7C 3'UTR 0.41 TCGA-4R-AA8I-01 16 30899130 30899130 T C BCL7C 3'UTR 0.48 TCGA-4R-AA8I-01 16 31008338 31008338 A T STX1B Missense_Mutation p.Y133N 0.33 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 16 31123656 31123656 C T BCKDK 3'UTR 0.45 TCGA-4R-AA8I-01 16 31196408 31196408 C T FUS Silent p.G224G 0.41 TCGA-4R-AA8I-01 16 31508226 31508226 C T C16orf58 Missense_Mutation p.V216M 0.35 tolerated(1) benign(0.017) TCGA-4R-AA8I-01 16 3293875 3293875 C T MEFV Missense_Mutation p.A593T 0.37 deleterious(0.05) benign(0.095) TCGA-4R-AA8I-01 16 3712966 3712966 C T TRAP1 Missense_Mutation p.A571T 0.32 tolerated(0.57) benign(0.005) TCGA-4R-AA8I-01 16 4433386 4433386 A T VASN 3'UTR 0.34 TCGA-4R-AA8I-01 16 4802884 4802885 - G ZNF500 Frame_Shift_Ins p.P313Tfs*10 0.26 TCGA-4R-AA8I-01 16 4930407 4930407 G A UBN1 3'UTR 0.40 TCGA-4R-AA8I-01 16 51173443 51173443 A G SALL1 Missense_Mutation p.V897A 0.45 tolerated(0.5) benign(0.019) TCGA-4R-AA8I-01 16 54317531 54317531 T - IRX3 3'UTR 0.37 TCGA-4R-AA8I-01 16 56548568 56548568 G A BBS2 Missense_Mutation p.R48W 0.40 deleterious(0) probably_damaging(0.924) TCGA-4R-AA8I-01 16 57144691 57144691 G A CPNE2 Missense_Mutation p.G13R 0.41 tolerated(0.06) probably_damaging(0.953) TCGA-4R-AA8I-01 16 57794959 57794959 G A KIFC3 Missense_Mutation p.T666I 0.38 deleterious(0.01) probably_damaging(0.919) TCGA-4R-AA8I-01 16 57918254 57918254 G - CNGB1 Frame_Shift_Del p.E1191Sfs*33 0.25 TCGA-4R-AA8I-01 16 57937813 57937813 A G CNGB1 Missense_Mutation p.Y903H 0.41 deleterious(0) possibly_damaging(0.766) TCGA-4R-AA8I-01 16 58706066 58706066 G A SLC38A7 Missense_Mutation p.A322V 0.18 tolerated(0.32) benign(0.139) TCGA-4R-AA8I-01 16 599385 599385 C T CAPN15 Missense_Mutation p.R586W 0.22 deleterious(0.01) probably_damaging(1) TCGA-4R-AA8I-01 16 67184217 67184217 A G B3GNT9 Silent p.L58L 0.36 TCGA-4R-AA8I-01 16 67683180 67683180 A G RLTPR Missense_Mutation p.H571R 0.39 deleterious(0) benign(0.122) TCGA-4R-AA8I-01 16 67688265 67688265 G - RLTPR Frame_Shift_Del p.G1086Afs*32 0.33 TCGA-4R-AA8I-01 16 67765413 67765413 G A RANBP10 Missense_Mutation p.P284L 0.41 tolerated(0.11) benign(0.001) TCGA-4R-AA8I-01 16 67805940 67805940 G A RANBP10 Missense_Mutation p.P133S 0.34 deleterious(0) possibly_damaging(0.515) TCGA-4R-AA8I-01 16 67877499 67877499 A C THAP11 3'UTR 0.41 TCGA-4R-AA8I-01 16 67943147 67943147 G T PSKH1 Missense_Mutation p.Q165H 0.32 deleterious(0.05) possibly_damaging(0.771) TCGA-4R-AA8I-01 16 68404788 68404788 C T SMPD3 Missense_Mutation p.A433T 0.07 deleterious(0) possibly_damaging(0.7) TCGA-4R-AA8I-01 16 69418537 69418537 T A TERF2 Missense_Mutation p.E142D 0.40 deleterious(0.01) probably_damaging(0.938) TCGA-4R-AA8I-01 16 70708260 70708260 G A MTSS1L Silent p.D334D 0.40 TCGA-4R-AA8I-01 16 70805890 70805890 T C VAC14 Intron 0.26 TCGA-4R-AA8I-01 16 71509598 71509598 A G ZNF19 Silent p.G284G 0.35 TCGA-4R-AA8I-01 16 72157448 72157448 T C PMFBP1 Missense_Mutation p.Q897R 0.31 deleterious(0) benign(0.191) TCGA-4R-AA8I-01 16 75033861 75033861 G A ZNRF1 Missense_Mutation p.A98T 0.28 tolerated(0.12) benign(0.073) TCGA-4R-AA8I-01 16 79245910 79245910 G T WWOX 3'UTR 0.50 TCGA-4R-AA8I-01 16 81201594 81201594 G T PKD1L2 3'Flank 0.09 TCGA-4R-AA8I-01 16 81411036 81411036 C T GAN Silent p.Y543Y 0.08 TCGA-4R-AA8I-01 16 815293 815293 C - MSLN Frame_Shift_Del p.Y234Tfs*78 0.24 TCGA-4R-AA8I-01 16 88705522 88705522 C - IL17C Frame_Shift_Del p.P49Hfs*16 0.26 TCGA-4R-AA8I-01 16 88779224 88779224 G A CTU2 Silent p.P216P 0.36 TCGA-4R-AA8I-01 16 88793275 88793275 T C PIEZO1 Missense_Mutation p.S1183G 0.30 deleterious(0.01) probably_damaging(0.993) TCGA-4R-AA8I-01 16 88928077 88928077 G A PABPN1L 3'Flank 0.16 TCGA-4R-AA8I-01 16 89348566 89348568 TCT - ANKRD11 In_Frame_Del p.K1461del 0.44 TCGA-4R-AA8I-01 16 89783027 89783027 T - VPS9D1 Frame_Shift_Del p.T92Hfs*3 0.10 TCGA-4R-AA8I-01 16 89804261 89804261 C T ZNF276 Missense_Mutation p.R508W 0.04 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 16 90037950 90037950 G A CENPBD1 Silent p.G127G 0.36 TCGA-4R-AA8I-01 17 10404065 10404065 T C MYH1 Missense_Mutation p.N1248S 0.32 tolerated(0.1) benign(0.305) TCGA-4R-AA8I-01 17 10408257 10408257 G A MYH1 Missense_Mutation p.A854V 0.27 deleterious(0.02) benign(0.297) TCGA-4R-AA8I-01 17 12906873 12906873 A G ELAC2 Silent p.D334D 0.34 TCGA-4R-AA8I-01 17 12919138 12919138 T C ELAC2 Missense_Mutation p.T127A 0.12 deleterious(0) possibly_damaging(0.69) TCGA-4R-AA8I-01 17 12921261 12921261 A G ELAC2 Missense_Mutation p.W2R 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-4R-AA8I-01 17 13399378 13399378 G C HS3ST3A1 3'UTR 0.29 TCGA-4R-AA8I-01 17 15519097 15519097 A G RP11-385D13.1 Missense_Mutation p.C488R 0.38 tolerated_low_confidence(0.17) benign(0.093) TCGA-4R-AA8I-01 17 16340180 16340180 G A TRPV2 Missense_Mutation p.V758I 0.39 tolerated_low_confidence(0.08) benign(0.009) TCGA-4R-AA8I-01 17 17717926 17717926 C T SREBF1 Intron 0.30 TCGA-4R-AA8I-01 17 18138832 18138832 C T LLGL1 Nonsense_Mutation p.R445* 0.41 TCGA-4R-AA8I-01 17 19284128 19284128 T C MAPK7 Silent p.G202G 0.46 TCGA-4R-AA8I-01 17 21438727 21438727 G T C17orf51 Missense_Mutation p.A167D 0.40 deleterious_low_confidence(0) possibly_damaging(0.82) TCGA-4R-AA8I-01 17 2227123 2227123 A G SRR Missense_Mutation p.K327E 0.08 deleterious(0.02) benign(0) TCGA-4R-AA8I-01 17 26096024 26096024 G T NOS2 Missense_Mutation p.S671R 0.44 tolerated(0.18) possibly_damaging(0.58) TCGA-4R-AA8I-01 17 26731651 26731651 G A SLC46A1 Missense_Mutation p.T355M 0.46 deleterious(0.01) probably_damaging(1) TCGA-4R-AA8I-01 17 26732401 26732401 C T SLC46A1 Missense_Mutation p.G105E 0.39 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 17 26966334 26966334 T - KIAA0100 Frame_Shift_Del p.R410Efs*56 0.31 TCGA-4R-AA8I-01 17 27061037 27061037 G T NEK8 Missense_Mutation p.K28N 0.28 tolerated(0.24) benign(0.139) TCGA-4R-AA8I-01 17 27086034 27086034 C T FAM222B Missense_Mutation p.V315I 0.20 tolerated(0.51) benign(0.008) TCGA-4R-AA8I-01 17 27959374 27959375 - G SSH2 Frame_Shift_Ins p.E920Rfs*22 0.33 TCGA-4R-AA8I-01 17 28419089 28419089 C T EFCAB5 Missense_Mutation p.R1380C 0.30 deleterious(0) possibly_damaging(0.502) TCGA-4R-AA8I-01 17 28512649 28512649 C T NSRP1 Missense_Mutation p.A545V 0.45 deleterious(0.03) possibly_damaging(0.465) TCGA-4R-AA8I-01 17 2911342 2911342 A G RAP1GAP2 Missense_Mutation p.D466G 0.82 deleterious(0.04) benign(0.015) TCGA-4R-AA8I-01 17 30267438 30267438 T C SUZ12 Intron 0.33 TCGA-4R-AA8I-01 17 30806365 30806365 C T PSMD11 Nonsense_Mutation p.R337* 0.38 TCGA-4R-AA8I-01 17 30814538 30814538 C T CDK5R1 5'UTR 0.67 TCGA-4R-AA8I-01 17 30818043 30818043 T - CDK5R1 3'UTR 0.30 TCGA-4R-AA8I-01 17 3119841 3119841 G A OR1A1 Silent p.S309S 0.65 TCGA-4R-AA8I-01 17 32685125 32685125 G A CCL13 Missense_Mutation p.R91Q 0.43 tolerated(1) benign(0.002) TCGA-4R-AA8I-01 17 33325644 33325644 C T LIG3 Missense_Mutation p.R671W 0.39 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 17 33329755 33329755 G T LIG3 Missense_Mutation p.V915L 0.40 tolerated(0.54) benign(0.002) TCGA-4R-AA8I-01 17 34324830 34324830 C T CCL15 Missense_Mutation p.M105I 0.06 tolerated(0.43) benign(0.023) TCGA-4R-AA8I-01 17 35310201 35310201 A G AATF Missense_Mutation p.D100G 0.33 deleterious(0.01) benign(0.33) TCGA-4R-AA8I-01 17 35346611 35346611 A T AATF Missense_Mutation p.R405S 0.33 deleterious(0) probably_damaging(0.996) TCGA-4R-AA8I-01 17 35620662 35620662 G A ACACA Missense_Mutation p.R419C 0.44 deleterious(0) probably_damaging(0.997) TCGA-4R-AA8I-01 17 37584012 37584012 A G MED1 Silent p.S227S 0.36 TCGA-4R-AA8I-01 17 38183700 38183700 C T MED24 Missense_Mutation p.R489Q 0.48 deleterious(0.01) probably_damaging(0.993) TCGA-4R-AA8I-01 17 38520749 38520749 T - CTD-2267D19.3 3'UTR 0.25 TCGA-4R-AA8I-01 17 38710943 38710943 C T CCR7 3'UTR 0.40 TCGA-4R-AA8I-01 17 39034421 39034421 C T KRT20 Missense_Mutation p.R372H 0.43 deleterious(0.04) probably_damaging(0.984) TCGA-4R-AA8I-01 17 39041125 39041125 A C KRT20 Missense_Mutation p.W105G 0.04 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 17 39551555 39551555 A T KRT31 Missense_Mutation p.I273N 0.39 deleterious(0.04) probably_damaging(0.936) TCGA-4R-AA8I-01 17 39983842 39983842 T C NT5C3B Missense_Mutation p.T202A 0.27 tolerated(0.14) possibly_damaging(0.588) TCGA-4R-AA8I-01 17 40263791 40263791 C A DHX58 Silent p.R40R 0.28 TCGA-4R-AA8I-01 17 40467640 40467640 A - STAT3 3'UTR 0.32 TCGA-4R-AA8I-01 17 40688604 40688604 G C NAGLU Missense_Mutation p.G105A 0.35 tolerated(0.1) possibly_damaging(0.641) TCGA-4R-AA8I-01 17 40817556 40817556 G A TUBG2 Silent p.P223P 0.20 TCGA-4R-AA8I-01 17 40928326 40928326 A G VPS25 Missense_Mutation p.T136A 0.36 deleterious(0.05) benign(0.289) TCGA-4R-AA8I-01 17 41907454 41907454 C T MPP3 Missense_Mutation p.A82T 0.51 tolerated(0.6) benign(0.008) TCGA-4R-AA8I-01 17 42089395 42089395 C A TMEM101 Missense_Mutation p.W225C 0.44 deleterious(0) probably_damaging(0.95) TCGA-4R-AA8I-01 17 42157801 42157801 G - HDAC5 Frame_Shift_Del p.I933Lfs*14 0.33 TCGA-4R-AA8I-01 17 42171119 42171119 G A HDAC5 Missense_Mutation p.R61W 0.42 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-4R-AA8I-01 17 42857240 42857240 C T ADAM11 3'UTR 0.42 TCGA-4R-AA8I-01 17 43171104 43171104 G A NMT1 Missense_Mutation p.R146H 0.34 deleterious(0) probably_damaging(0.987) TCGA-4R-AA8I-01 17 44108889 44108889 G A KANSL1 Missense_Mutation p.R1091W 0.34 tolerated_low_confidence(0.11) benign(0.06) TCGA-4R-AA8I-01 17 45363766 45363766 T C ITGB3 Missense_Mutation p.I252T 0.35 deleterious(0) possibly_damaging(0.807) TCGA-4R-AA8I-01 17 45895948 45895948 G A OSBPL7 Missense_Mutation p.A135V 0.44 deleterious(0.02) benign(0.237) TCGA-4R-AA8I-01 17 45896429 45896429 G A OSBPL7 Missense_Mutation p.R98W 0.34 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 17 45915105 45915105 A - SCRN2 3'UTR 0.20 TCGA-4R-AA8I-01 17 46687954 46687954 G A HOXB7 Silent p.G109G 0.42 TCGA-4R-AA8I-01 17 46805444 46805444 G T HOXB13 Missense_Mutation p.S171Y 0.48 deleterious(0) benign(0.088) TCGA-4R-AA8I-01 17 4686302 4686302 T C TM4SF5 Silent p.G183G 0.27 TCGA-4R-AA8I-01 17 47389292 47389292 G A ZNF652 Silent p.C387C 0.27 TCGA-4R-AA8I-01 17 47797702 47797702 G A FAM117A Missense_Mutation p.R187W 0.37 tolerated(0.2) possibly_damaging(0.857) TCGA-4R-AA8I-01 17 48191303 48191303 G A SAMD14 Silent p.D389D 0.48 TCGA-4R-AA8I-01 17 48276626 48276626 G - COL1A1 Frame_Shift_Del p.G145Dfs*120 0.13 TCGA-4R-AA8I-01 17 48452870 48452870 A G EME1 Missense_Mutation p.T101A 0.45 tolerated(0.27) benign(0.005) TCGA-4R-AA8I-01 17 48913245 48913245 C - WFIKKN2 5'UTR 0.24 TCGA-4R-AA8I-01 17 49233116 49233116 G A NME1 Missense_Mutation p.R59H 0.23 tolerated(0.09) benign(0.019) TCGA-4R-AA8I-01 17 49272711 49272711 G A MBTD1 Silent p.D412D 0.37 TCGA-4R-AA8I-01 17 58740416 58740416 C T PPM1D Missense_Mutation p.R441C 0.42 tolerated(0.07) benign(0.016) TCGA-4R-AA8I-01 17 62007735 62007735 A G CD79B Silent p.C44C 0.34 TCGA-4R-AA8I-01 17 65862621 65862621 A G BPTF Missense_Mutation p.Y493C 0.47 probably_damaging(0.999) TCGA-4R-AA8I-01 17 66537018 66537018 G A FAM20A Silent p.I397I 0.29 TCGA-4R-AA8I-01 17 6676525 6676525 T C XAF1 3'UTR 0.50 TCGA-4R-AA8I-01 17 66972304 66972304 T C ABCA9 Missense_Mutation p.Y1583C 0.27 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 17 66980300 66980300 T G ABCA9 Missense_Mutation p.T1466P 0.21 deleterious(0.01) possibly_damaging(0.541) TCGA-4R-AA8I-01 17 71189436 71189436 A G COG1 Silent p.L76L 0.04 TCGA-4R-AA8I-01 17 7130768 7130768 G A DVL2 Missense_Mutation p.R440W 0.75 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 17 726873 726874 - A NXN Frame_Shift_Ins p.W204Lfs*32 0.41 TCGA-4R-AA8I-01 17 72840513 72840513 C T GRIN2C Missense_Mutation p.A829T 0.39 tolerated(0.05) possibly_damaging(0.643) TCGA-4R-AA8I-01 17 73008822 73008822 C - ICT1 Frame_Shift_Del p.G15Efs*60 0.26 TCGA-4R-AA8I-01 17 73490855 73490855 T C KIAA0195 Missense_Mutation p.V852A 0.35 deleterious(0) probably_damaging(0.945) TCGA-4R-AA8I-01 17 73754367 73754367 G A GALK1 Missense_Mutation p.T344M 0.34 deleterious(0.01) probably_damaging(0.989) TCGA-4R-AA8I-01 17 73893020 73893020 G A TRIM65 5'UTR 0.32 TCGA-4R-AA8I-01 17 73910972 73910972 G A FBF1 Silent p.C875C 0.36 TCGA-4R-AA8I-01 17 74072920 74072920 C A GALR2 Missense_Mutation p.T191N 0.40 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 17 74079608 74079608 G A EXOC7 3'UTR 0.57 TCGA-4R-AA8I-01 17 74673646 74673646 C T MXRA7 3'UTR 0.14 TCGA-4R-AA8I-01 17 7578275 7578277 GAG - TP53 In_Frame_Del p.P191del 0.70 TCGA-4R-AA8I-01 17 7667529 7667529 A T DNAH2 Missense_Mutation p.I1092F 0.68 benign(0.05) TCGA-4R-AA8I-01 17 76798586 76798586 C T USP36 Missense_Mutation p.A948T 0.16 tolerated(0.66) benign(0.003) TCGA-4R-AA8I-01 17 76993769 76993769 A C CANT1 5'UTR 0.71 TCGA-4R-AA8I-01 17 77081342 77081342 C T ENGASE Nonsense_Mutation p.R540* 0.76 TCGA-4R-AA8I-01 17 79411578 79411578 G - RP11-1055B8.7 Frame_Shift_Del p.H835Tfs*139 0.26 TCGA-4R-AA8I-01 17 79423474 79423474 G A RP11-1055B8.7 Missense_Mutation p.R1574H 0.48 probably_damaging(0.923) TCGA-4R-AA8I-01 17 79827620 79827620 C T ARHGDIA Missense_Mutation p.A63T 0.07 tolerated(0.34) benign(0.001) TCGA-4R-AA8I-01 17 79857927 79857927 A T ANAPC11 Missense_Mutation p.E181V 0.69 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-4R-AA8I-01 17 80391624 80391624 C T HEXDC Silent p.L125L 0.04 TCGA-4R-AA8I-01 17 80521292 80521293 AG - FOXK2 Frame_Shift_Del p.K164Afs*5 0.60 TCGA-4R-AA8I-01 17 80900525 80900525 C T TBCD 3'UTR 0.61 TCGA-4R-AA8I-01 17 8092992 8092992 C T C17orf59 Missense_Mutation p.G156D 0.48 deleterious_low_confidence(0) possibly_damaging(0.762) TCGA-4R-AA8I-01 18 11851635 11851635 A C CHMP1B Missense_Mutation p.K42T 0.05 deleterious(0.03) possibly_damaging(0.898) TCGA-4R-AA8I-01 18 11853351 11853351 C T CHMP1B 3'UTR 0.39 TCGA-4R-AA8I-01 18 18625320 18625320 C T ROCK1 Missense_Mutation p.A175T 0.33 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 18 21136382 21136382 G A NPC1 Missense_Mutation p.P384L 0.46 deleterious(0) possibly_damaging(0.764) TCGA-4R-AA8I-01 18 22642669 22642669 A G ZNF521 3'UTR 0.35 TCGA-4R-AA8I-01 18 28584133 28584133 T A DSC3 Silent p.I696I 0.36 TCGA-4R-AA8I-01 18 42532195 42532195 T C SETBP1 Missense_Mutation p.F964L 0.07 tolerated(0.69) probably_damaging(0.986) TCGA-4R-AA8I-01 18 44098132 44098132 C T LOXHD1 Missense_Mutation p.G676R 0.45 deleterious(0) probably_damaging(0.971) TCGA-4R-AA8I-01 18 52895534 52895534 G A TCF4 Silent p.S748S 0.21 TCGA-4R-AA8I-01 18 55024435 55024435 A G ST8SIA3 Silent p.Q198Q 0.31 TCGA-4R-AA8I-01 18 55217925 55217925 C T FECH 3'UTR 0.28 TCGA-4R-AA8I-01 18 61071042 61071042 G A VPS4B Nonsense_Mutation p.R128* 0.35 TCGA-4R-AA8I-01 18 66377257 66377257 C G TMX3 Splice_Site p.X89_splice 0.18 TCGA-4R-AA8I-01 18 675343 675343 C T ENOSF1 Missense_Mutation p.R410Q 0.44 tolerated(0.26) benign(0.002) TCGA-4R-AA8I-01 18 67614087 67614087 T C CD226 Missense_Mutation p.N89D 0.08 tolerated(0.18) benign(0.038) TCGA-4R-AA8I-01 18 67844066 67844066 G T RTTN Missense_Mutation p.L441M 0.28 tolerated(0.16) benign(0.028) TCGA-4R-AA8I-01 18 70205360 70205360 G T CBLN2 3'UTR 0.38 TCGA-4R-AA8I-01 18 724267 724268 - A YES1 3'UTR 0.35 TCGA-4R-AA8I-01 18 74155027 74155027 G A ZNF516 5'UTR 0.28 TCGA-4R-AA8I-01 18 74155101 74155101 A - ZNF516 5'UTR 0.30 TCGA-4R-AA8I-01 18 77488909 77488909 C T CTDP1 Missense_Mutation p.A807V 0.14 tolerated(0.99) benign(0.01) TCGA-4R-AA8I-01 18 77895803 77895803 A T ADNP2 Missense_Mutation p.E836V 0.26 deleterious(0) probably_damaging(0.918) TCGA-4R-AA8I-01 19 10225062 10225062 C G PPAN-P2RY11 Missense_Mutation p.A678G 0.48 tolerated_low_confidence(0.06) benign(0.178) TCGA-4R-AA8I-01 19 10405166 10405166 G A ICAM5 Missense_Mutation p.G694S 0.39 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 19 10748543 10748543 C T SLC44A2 Silent p.Y569Y 0.33 TCGA-4R-AA8I-01 19 10961063 10961063 G - C19orf38 Frame_Shift_Del p.Q56Rfs*15 0.33 TCGA-4R-AA8I-01 19 11217304 11217304 G A LDLR Missense_Mutation p.R253Q 0.38 tolerated(0.11) benign(0.107) TCGA-4R-AA8I-01 19 12059373 12059373 C T ZNF700 Silent p.R178R 0.05 TCGA-4R-AA8I-01 19 1218439 1218439 T G STK11 Nonsense_Mutation p.L105* 0.44 TCGA-4R-AA8I-01 19 12305889 12305889 C T CTD-2666L21.1 RNA 0.50 TCGA-4R-AA8I-01 19 12692077 12692077 T - ZNF490 Frame_Shift_Del p.N271Ifs*24 0.24 TCGA-4R-AA8I-01 19 13135850 13135850 T C NFIX Missense_Mutation p.F15L 0.09 deleterious(0) benign(0.396) TCGA-4R-AA8I-01 19 1376620 1376620 G A MUM1 3'UTR 0.24 TCGA-4R-AA8I-01 19 13882965 13882965 T A MRI1 Missense_Mutation p.V327D 0.04 deleterious(0) probably_damaging(0.995) TCGA-4R-AA8I-01 19 1395199 1395199 A T NDUFS7 Intron 0.67 TCGA-4R-AA8I-01 19 13988407 13988407 C T NANOS3 Silent p.C115C 0.42 TCGA-4R-AA8I-01 19 14024359 14024359 C T CC2D1A Missense_Mutation p.A219V 0.38 tolerated(0.31) benign(0.001) TCGA-4R-AA8I-01 19 1510710 1510710 G A ADAMTSL5 Missense_Mutation p.P40L 0.61 tolerated(0.1) benign(0.036) TCGA-4R-AA8I-01 19 15278080 15278080 T A NOTCH3 Missense_Mutation p.D1781V 0.26 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 19 15483896 15483896 G - AKAP8 Frame_Shift_Del p.F210Sfs*18 0.28 TCGA-4R-AA8I-01 19 16192750 16192750 C T TPM4 Nonsense_Mutation p.R90* 0.49 TCGA-4R-AA8I-01 19 1625583 1625583 C T TCF3 Missense_Mutation p.G164D 0.68 tolerated(0.51) benign(0.394) TCGA-4R-AA8I-01 19 16797152 16797152 G A TMEM38A Missense_Mutation p.R203H 0.30 tolerated(0.95) benign(0.011) TCGA-4R-AA8I-01 19 17010283 17010283 T C CPAMD8 Intron 0.37 TCGA-4R-AA8I-01 19 17434419 17434419 T C ANO8 Silent p.L1202L 0.08 TCGA-4R-AA8I-01 19 1827184 1827184 A G REXO1 Missense_Mutation p.V535A 0.65 tolerated(1) benign(0) TCGA-4R-AA8I-01 19 1953936 1953936 C T CSNK1G2 Intron 0.34 TCGA-4R-AA8I-01 19 21512135 21512135 G A ZNF708 5'UTR 0.55 TCGA-4R-AA8I-01 19 21561094 21561094 C T ZNF738 3'UTR 0.45 TCGA-4R-AA8I-01 19 2193778 2193778 C T DOT1L Missense_Mutation p.A195V 0.58 deleterious(0) probably_damaging(0.985) TCGA-4R-AA8I-01 19 22155265 22155265 T C ZNF208 Silent p.G857G 0.35 TCGA-4R-AA8I-01 19 22786082 22786082 T C AC011467.1 3'Flank 0.39 TCGA-4R-AA8I-01 19 22836161 22836161 A G ZNF492 5'UTR 0.29 TCGA-4R-AA8I-01 19 22847569 22847569 A C ZNF492 Missense_Mutation p.K366N 0.37 deleterious(0.02) possibly_damaging(0.894) TCGA-4R-AA8I-01 19 2290416 2290416 C T LINGO3 Missense_Mutation p.A454T 0.83 tolerated(0.63) benign(0.001) TCGA-4R-AA8I-01 19 2717762 2717762 C - DIRAS1 Frame_Shift_Del p.A15Rfs*14 0.41 TCGA-4R-AA8I-01 19 30101413 30101413 G A POP4 Missense_Mutation p.R53H 0.04 tolerated(0.37) benign(0.02) TCGA-4R-AA8I-01 19 30503420 30503420 C A URI1 Silent p.P469P 0.38 TCGA-4R-AA8I-01 19 33169091 33169091 C A RGS9BP 3'UTR 0.21 TCGA-4R-AA8I-01 19 33450938 33450938 G A CEP89 Missense_Mutation p.A58V 0.21 tolerated(0.19) possibly_damaging(0.897) TCGA-4R-AA8I-01 19 33663288 33663288 T A WDR88 Missense_Mutation p.I395N 0.35 deleterious(0.01) possibly_damaging(0.453) TCGA-4R-AA8I-01 19 34263780 34263780 C T CHST8 Missense_Mutation p.R363C 0.44 deleterious(0) possibly_damaging(0.67) TCGA-4R-AA8I-01 19 34949675 34949675 T - UBA2 Frame_Shift_Del p.L418* 0.08 TCGA-4R-AA8I-01 19 36046611 36046611 C T ATP4A Missense_Mutation p.R658H 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-4R-AA8I-01 19 36223002 36223002 G - KMT2B Frame_Shift_Del p.G1879Vfs*16 0.24 TCGA-4R-AA8I-01 19 36357195 36357195 A G KIRREL2 Missense_Mutation p.N643S 0.41 tolerated(0.79) benign(0.003) TCGA-4R-AA8I-01 19 36643532 36643532 C T COX7A1 5'UTR 0.50 TCGA-4R-AA8I-01 19 37130266 37130266 T G ZNF461 Missense_Mutation p.K327N 0.38 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 19 3805943 3805943 C T ZFR2 3'UTR 0.76 TCGA-4R-AA8I-01 19 38104182 38104182 A G ZNF540 3'UTR 0.37 TCGA-4R-AA8I-01 19 38104247 38104247 T - ZNF540 3'UTR 0.53 TCGA-4R-AA8I-01 19 38573540 38573540 C T SIPA1L3 Silent p.S445S 0.46 TCGA-4R-AA8I-01 19 38893823 38893823 G - FAM98C Frame_Shift_Del p.A12Pfs*56 0.32 TCGA-4R-AA8I-01 19 39096218 39096218 G A MAP4K1 Silent p.T451T 0.41 TCGA-4R-AA8I-01 19 39329068 39329068 G A HNRNPL Missense_Mutation p.P509L 0.36 deleterious(0) possibly_damaging(0.688) TCGA-4R-AA8I-01 19 39798258 39798258 G A LRFN1 3'UTR 0.18 TCGA-4R-AA8I-01 19 40009252 40009252 C A SELV Missense_Mutation p.L272I 0.06 deleterious(0.03) benign(0.112) TCGA-4R-AA8I-01 19 41219998 41219998 C T ADCK4 Missense_Mutation p.R88H 0.20 deleterious(0.01) probably_damaging(0.96) TCGA-4R-AA8I-01 19 41268862 41268862 G A SNRPA Silent p.P161P 0.05 TCGA-4R-AA8I-01 19 41307129 41307129 C T EGLN2 Missense_Mutation p.R218C 0.50 deleterious(0.03) possibly_damaging(0.642) TCGA-4R-AA8I-01 19 42224866 42224866 C - CEACAM5 Frame_Shift_Del p.P601Qfs*68 0.36 TCGA-4R-AA8I-01 19 42744195 42744195 C T AC006486.9 Missense_Mutation p.G41D 0.10 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 19 42879710 42879710 T C MEGF8 Missense_Mutation p.C2374R 0.36 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 19 42893103 42893103 C T CNFN Silent p.T29T 0.50 TCGA-4R-AA8I-01 19 42912244 42912244 C T LIPE Missense_Mutation p.G514S 0.38 tolerated(0.1) probably_damaging(0.997) TCGA-4R-AA8I-01 19 43093012 43093012 G A CEACAM8 Silent p.S294S 0.41 TCGA-4R-AA8I-01 19 438994 438994 G A SHC2 Silent p.G192G 0.66 TCGA-4R-AA8I-01 19 44117933 44117934 GA - SRRM5 Frame_Shift_Del p.E556Afs*29 0.36 TCGA-4R-AA8I-01 19 44635386 44635386 G A ZNF225 Missense_Mutation p.D207N 0.22 tolerated(0.22) possibly_damaging(0.498) TCGA-4R-AA8I-01 19 44739561 44739561 C T ZNF227 Silent p.C326C 0.46 TCGA-4R-AA8I-01 19 44791785 44791785 A G ZNF235 Silent p.C601C 0.46 TCGA-4R-AA8I-01 19 45411140 45411140 G A APOE Missense_Mutation p.R56H 0.42 deleterious(0.04) benign(0.013) TCGA-4R-AA8I-01 19 4548377 4548377 G A SEMA6B Missense_Mutation p.A451V 0.44 tolerated(0.32) benign(0.001) TCGA-4R-AA8I-01 19 45685038 45685038 A T BLOC1S3 3'UTR 0.20 TCGA-4R-AA8I-01 19 48202008 48202008 C T GLTSCR1 Silent p.G1122G 0.45 TCGA-4R-AA8I-01 19 4891359 4891359 G A ARRDC5 Missense_Mutation p.S243F 0.36 tolerated(0.32) benign(0.011) TCGA-4R-AA8I-01 19 4891371 4891371 G T ARRDC5 Missense_Mutation p.A239E 0.34 deleterious(0.04) benign(0.233) TCGA-4R-AA8I-01 19 49148722 49148722 G A CA11 Missense_Mutation p.P27L 0.34 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-4R-AA8I-01 19 49183645 49183645 A G RN7SL345P 5'Flank 0.34 TCGA-4R-AA8I-01 19 49254381 49254381 G T FUT1 Missense_Mutation p.A53D 0.37 deleterious_low_confidence(0.03) possibly_damaging(0.745) TCGA-4R-AA8I-01 19 49965147 49965147 C T ALDH16A1 Missense_Mutation p.R256C 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-4R-AA8I-01 19 50156878 50156878 G T SCAF1 Missense_Mutation p.V1078F 0.46 benign(0.203) TCGA-4R-AA8I-01 19 50391714 50391714 C T TBC1D17 Silent p.L594L 0.12 TCGA-4R-AA8I-01 19 50542425 50542425 T C ZNF473 Missense_Mutation p.V6A 0.37 tolerated(0.17) possibly_damaging(0.822) TCGA-4R-AA8I-01 19 50794187 50794187 G A MYH14 Missense_Mutation p.R1670H 0.41 deleterious(0) probably_damaging(0.988) TCGA-4R-AA8I-01 19 50905061 50905061 C - POLD1 Frame_Shift_Del p.P116Hfs*53 0.24 TCGA-4R-AA8I-01 19 5119732 5119732 C T KDM4B Missense_Mutation p.T395M 0.87 benign(0) TCGA-4R-AA8I-01 19 51520382 51520382 C T KLK10 Missense_Mutation p.A85T 0.43 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 19 51537801 51537801 A T KLK12 Intron 0.42 TCGA-4R-AA8I-01 19 51840531 51840531 G A VSIG10L Nonsense_Mutation p.Q756* 0.40 TCGA-4R-AA8I-01 19 52034864 52034864 T C SIGLEC6 Silent p.L13L 0.34 TCGA-4R-AA8I-01 19 5221076 5221076 G - PTPRS Frame_Shift_Del p.K1131Sfs*27 0.26 TCGA-4R-AA8I-01 19 52569919 52569919 A G ZNF841 Missense_Mutation p.C406R 0.44 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 19 52954858 52954858 C T ZNF578 5'Flank 0.27 TCGA-4R-AA8I-01 19 53014578 53014578 A G ZNF578 Missense_Mutation p.Y315C 0.40 deleterious(0.02) probably_damaging(0.975) TCGA-4R-AA8I-01 19 53740048 53740048 G A ZNF677 3'UTR 0.45 TCGA-4R-AA8I-01 19 54445641 54445641 C A CACNG7 3'UTR 0.60 TCGA-4R-AA8I-01 19 54598444 54598444 G A OSCAR 3'UTR 0.44 TCGA-4R-AA8I-01 19 54659276 54659276 G - LENG1 3'UTR 0.26 TCGA-4R-AA8I-01 19 54721271 54721271 C T LILRB3 Missense_Mutation p.A557T 0.24 tolerated(0.18) probably_damaging(0.981) TCGA-4R-AA8I-01 19 54967527 54967527 G A LENG8 Missense_Mutation p.S443N 0.42 tolerated(0.2) benign(0.258) TCGA-4R-AA8I-01 19 55087325 55087325 C - LILRA2 Frame_Shift_Del p.P336Qfs*5 0.27 TCGA-4R-AA8I-01 19 55148382 55148382 C T LILRB1 3'UTR 0.32 TCGA-4R-AA8I-01 19 55591068 55591068 C T EPS8L1 Missense_Mutation p.T43M 0.32 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 19 55693151 55693151 C T PTPRH Missense_Mutation p.A1107T 0.42 possibly_damaging(0.886) TCGA-4R-AA8I-01 19 55899324 55899324 G A RPL28 Missense_Mutation p.V78M 0.41 tolerated(0.08) possibly_damaging(0.542) TCGA-4R-AA8I-01 19 55919025 55919026 - G UBE2S 5'UTR 0.31 TCGA-4R-AA8I-01 19 55992668 55992668 C T ZNF628 Silent p.Y36Y 0.39 TCGA-4R-AA8I-01 19 5604862 5604862 G A SAFB2 Missense_Mutation p.A461V 0.30 tolerated(0.17) possibly_damaging(0.905) TCGA-4R-AA8I-01 19 56185355 56185355 C T U2AF2 Missense_Mutation p.T450M 0.36 deleterious(0) probably_damaging(0.966) TCGA-4R-AA8I-01 19 5661679 5661679 C T SAFB Silent p.R671R 0.09 TCGA-4R-AA8I-01 19 57175770 57175770 A T ZNF835 Missense_Mutation p.I266N 0.43 deleterious(0.04) possibly_damaging(0.828) TCGA-4R-AA8I-01 19 57803344 57803344 G A ZNF460 Missense_Mutation p.V479M 0.22 tolerated(0.1) benign(0.112) TCGA-4R-AA8I-01 19 5832042 5832042 G T FUT6 Silent p.A179A 0.41 TCGA-4R-AA8I-01 19 58384994 58384994 G A ZNF814 Silent p.I588I 0.46 TCGA-4R-AA8I-01 19 58773536 58773536 T C ZNF544 Missense_Mutation p.C522R 0.37 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 19 59011917 59011917 G A SLC27A5 Missense_Mutation p.R447C 0.31 deleterious(0.03) benign(0.126) TCGA-4R-AA8I-01 19 59059077 59059077 G A TRIM28 Missense_Mutation p.S279N 0.31 tolerated(0.13) benign(0.006) TCGA-4R-AA8I-01 19 6213019 6213019 C - MLLT1 3'UTR 0.15 TCGA-4R-AA8I-01 19 6467259 6467259 G T DENND1C 3'UTR 0.40 TCGA-4R-AA8I-01 19 6743585 6743585 C T TRIP10 Silent p.N163N 0.30 TCGA-4R-AA8I-01 19 7585482 7585482 C A ZNF358 Missense_Mutation p.L452I 0.45 tolerated_low_confidence(0.12) benign(0.086) TCGA-4R-AA8I-01 19 7687717 7687717 G A XAB2 Silent p.S434S 0.08 TCGA-4R-AA8I-01 19 804698 804698 A G PTBP1 Missense_Mutation p.H201R 0.59 deleterious(0.04) benign(0.054) TCGA-4R-AA8I-01 19 8320763 8320763 C T CERS4 Silent p.H156H 0.35 TCGA-4R-AA8I-01 19 9071612 9071612 A G MUC16 Silent p.S5278S 0.05 TCGA-4R-AA8I-01 19 9524021 9524021 T G ZNF266 Missense_Mutation p.K527T 0.33 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 1 101379226 101379226 A T SLC30A7 Silent p.G173G 0.46 TCGA-4R-AA8I-01 1 10510098 10510098 G A CORT 5'UTR 0.39 TCGA-4R-AA8I-01 1 10713986 10713986 G T CASZ1 Missense_Mutation p.L710M 0.41 deleterious_low_confidence(0.02) probably_damaging(0.962) TCGA-4R-AA8I-01 1 108023282 108023282 C T NTNG1 Silent p.C480C 0.43 TCGA-4R-AA8I-01 1 109171126 109171126 T C FAM102B Silent p.C254C 0.40 TCGA-4R-AA8I-01 1 109801459 109801459 A G CELSR2 Missense_Mutation p.N1239S 0.25 deleterious(0) benign(0.004) TCGA-4R-AA8I-01 1 11007833 11007833 C - C1orf127 Frame_Shift_Del p.A787Pfs*7 0.27 TCGA-4R-AA8I-01 1 11009719 11009719 G A C1orf127 Missense_Mutation p.R418W 0.38 tolerated(0.15) benign(0.002) TCGA-4R-AA8I-01 1 110255817 110255817 G T GSTM5 Intron 0.32 TCGA-4R-AA8I-01 1 110300674 110300674 G A EPS8L3 Silent p.L243L 0.36 TCGA-4R-AA8I-01 1 11151567 11151567 A G EXOSC10 Missense_Mutation p.S154P 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-4R-AA8I-01 1 111703836 111703836 T - CEPT1 Frame_Shift_Del p.C185Vfs*26 0.31 TCGA-4R-AA8I-01 1 116226598 116226598 C T VANGL1 Missense_Mutation p.A327V 0.45 tolerated(0.05) benign(0.02) TCGA-4R-AA8I-01 1 117484576 117484576 A G PTGFRN Missense_Mutation p.T97A 0.14 tolerated(0.24) possibly_damaging(0.822) TCGA-4R-AA8I-01 1 118168911 118168911 T - FAM46C 3'UTR 0.30 TCGA-4R-AA8I-01 1 11854040 11854040 T C MTHFR Missense_Mutation p.Q485R 0.27 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 1 11980369 11980369 C T KIAA2013 3'UTR 0.42 TCGA-4R-AA8I-01 1 120166363 120166363 G A ZNF697 Silent p.G201G 0.40 TCGA-4R-AA8I-01 1 120166521 120166521 G T ZNF697 Missense_Mutation p.L149M 0.40 deleterious(0.01) probably_damaging(0.935) TCGA-4R-AA8I-01 1 120468048 120468048 G A NOTCH2 Missense_Mutation p.A1464V 0.37 tolerated(0.26) benign(0.096) TCGA-4R-AA8I-01 1 12082888 12082888 A G MIIP Splice_Site p.X155_splice 0.29 TCGA-4R-AA8I-01 1 12726630 12726630 T G AADACL4 Missense_Mutation p.Y370D 0.04 deleterious(0.03) probably_damaging(0.934) TCGA-4R-AA8I-01 1 1273715 1273715 G A DVL1 Missense_Mutation p.R456W 0.38 deleterious(0) probably_damaging(0.988) TCGA-4R-AA8I-01 1 12908251 12908251 C T HNRNPCL1 5'UTR 0.18 TCGA-4R-AA8I-01 1 145075655 145075655 C A PDE4DIP Missense_Mutation p.A70S 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.87) TCGA-4R-AA8I-01 1 145509916 145509916 T - RBM8A 3'UTR 0.17 TCGA-4R-AA8I-01 1 145589355 145589355 C G NUDT17 Missense_Mutation p.G25R 0.10 deleterious(0.05) benign(0.06) TCGA-4R-AA8I-01 1 147230336 147230336 A T GJA5 Nonsense_Mutation p.Y337* 0.32 TCGA-4R-AA8I-01 1 147380385 147380385 C T GJA8 Silent p.R101R 0.44 TCGA-4R-AA8I-01 1 148560989 148560989 A G NBPF15 5'UTR 0.27 TCGA-4R-AA8I-01 1 149761861 149761861 A T FCGR1A Nonsense_Mutation p.K271* 0.21 TCGA-4R-AA8I-01 1 150470091 150470091 A G TARS2 Missense_Mutation p.E369G 0.19 tolerated(0.08) benign(0.042) TCGA-4R-AA8I-01 1 150958820 150958820 G A ANXA9 Missense_Mutation p.V161M 0.34 tolerated(0.08) benign(0.17) TCGA-4R-AA8I-01 1 150997084 150997084 C G PRUNE Intron 0.35 TCGA-4R-AA8I-01 1 151220458 151220458 A G PIP5K1A 3'Flank 0.59 TCGA-4R-AA8I-01 1 152733284 152733284 G A KPRP Missense_Mutation p.R407H 0.45 tolerated(0.58) benign(0.058) TCGA-4R-AA8I-01 1 152799972 152799972 G A LCE1A Silent p.Q8Q 0.06 TCGA-4R-AA8I-01 1 153784289 153784289 T C GATAD2B Missense_Mutation p.I522M 0.39 tolerated(0.14) benign(0.142) TCGA-4R-AA8I-01 1 153912225 153912225 C A DENND4B Missense_Mutation p.E553D 0.40 tolerated(1) benign(0.02) TCGA-4R-AA8I-01 1 15392494 15392494 G A KAZN Intron 0.45 TCGA-4R-AA8I-01 1 154527247 154527247 G A UBE2Q1 Silent p.D184D 0.37 TCGA-4R-AA8I-01 1 154542783 154542783 T C CHRNB2 Missense_Mutation p.M102T 0.39 deleterious(0) benign(0.388) TCGA-4R-AA8I-01 1 155261612 155261612 C T PKLR Missense_Mutation p.R518H 0.37 tolerated(0.14) benign(0.002) TCGA-4R-AA8I-01 1 155282158 155282158 C T FDPS Missense_Mutation p.A151V 0.10 tolerated(0.07) benign(0.223) TCGA-4R-AA8I-01 1 15541641 15541641 G T TMEM51 Missense_Mutation p.G20W 0.44 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 1 155450461 155450461 G T ASH1L Missense_Mutation p.L734I 0.44 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-4R-AA8I-01 1 155452064 155452064 G A ASH1L Silent p.S199S 0.05 TCGA-4R-AA8I-01 1 156106161 156106161 G T LMNA Silent p.G438G 0.22 TCGA-4R-AA8I-01 1 15655660 15655660 A - FHAD1 Intron 0.52 TCGA-4R-AA8I-01 1 156814001 156814001 G T INSRR Missense_Mutation p.L937I 0.56 tolerated(0.33) benign(0.033) TCGA-4R-AA8I-01 1 15702219 15702219 T A FHAD1 Missense_Mutation p.I446N 0.36 tolerated(0.09) benign(0.014) TCGA-4R-AA8I-01 1 157545235 157545235 G A FCRL4 3'UTR 0.42 TCGA-4R-AA8I-01 1 157667001 157667001 T C FCRL3 Missense_Mutation p.Y258C 0.37 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 1 157772454 157772454 C A FCRL1 Missense_Mutation p.R107M 0.42 deleterious(0) probably_damaging(0.971) TCGA-4R-AA8I-01 1 157963402 157963402 G T KIRREL 5'UTR 0.04 TCGA-4R-AA8I-01 1 158449993 158449993 C T OR10R2 Missense_Mutation p.A109V 0.34 tolerated(0.36) benign(0.01) TCGA-4R-AA8I-01 1 15899943 15899943 T C AGMAT 3'UTR 0.49 TCGA-4R-AA8I-01 1 159897228 159897228 G T IGSF9 Missense_Mutation p.F1149L 0.35 deleterious_low_confidence(0.04) probably_damaging(0.986) TCGA-4R-AA8I-01 1 160109518 160109518 A T ATP1A2 Missense_Mutation p.M977L 0.42 tolerated(0.16) benign(0.03) TCGA-4R-AA8I-01 1 160604472 160604472 C T SLAMF1 Missense_Mutation p.V211M 0.50 deleterious(0) probably_damaging(0.915) TCGA-4R-AA8I-01 1 160968510 160968510 A G F11R 3'UTR 0.46 TCGA-4R-AA8I-01 1 161654816 161654816 G A RPL31P11 RNA 0.28 TCGA-4R-AA8I-01 1 16377520 16377520 C A CLCNKB Missense_Mutation p.L402I 0.42 tolerated(0.12) probably_damaging(0.999) TCGA-4R-AA8I-01 1 166826739 166826740 - A TADA1 3'UTR 0.23 TCGA-4R-AA8I-01 1 170115226 170115226 A G METTL11B 5'UTR 0.35 TCGA-4R-AA8I-01 1 171501935 171501935 G C PRRC2C Missense_Mutation p.E568Q 0.37 unknown(0) TCGA-4R-AA8I-01 1 171514805 171514805 T C PRRC2C Missense_Mutation p.F1649L 0.36 unknown(0) TCGA-4R-AA8I-01 1 17328825 17328825 G A ATP13A2 Missense_Mutation p.R201C 0.45 tolerated(0.3) benign(0.004) TCGA-4R-AA8I-01 1 17418998 17418998 C A PADI2 Missense_Mutation p.R187L 0.13 deleterious(0.02) probably_damaging(0.972) TCGA-4R-AA8I-01 1 174606551 174606551 T C RABGAP1L Silent p.H583H 0.42 TCGA-4R-AA8I-01 1 17555492 17555492 C - PADI1 Frame_Shift_Del p.W294Gfs*3 0.32 TCGA-4R-AA8I-01 1 178359259 178359259 G A RASAL2 Missense_Mutation p.R161H 0.42 tolerated(0.05) probably_damaging(0.998) TCGA-4R-AA8I-01 1 17983183 17983183 C A ARHGEF10L Missense_Mutation p.A947D 0.24 deleterious(0) benign(0.192) TCGA-4R-AA8I-01 1 181680167 181680167 G A CACNA1E Missense_Mutation p.R378H 0.46 deleterious(0.03) possibly_damaging(0.522) TCGA-4R-AA8I-01 1 182354697 182354697 A G GLUL Intron 0.22 TCGA-4R-AA8I-01 1 182812563 182812563 T - DHX9 Frame_Shift_Del p.F83Lfs*3 0.28 TCGA-4R-AA8I-01 1 183204833 183204833 G A LAMC2 Silent p.P808P 0.49 TCGA-4R-AA8I-01 1 184688333 184688333 A G EDEM3 Missense_Mutation p.L375S 0.39 deleterious(0) probably_damaging(0.996) TCGA-4R-AA8I-01 1 1849317 1849317 T G TMEM52 3'UTR 0.06 TCGA-4R-AA8I-01 1 186276994 186276994 A G PRG4 Missense_Mutation p.T715A 0.07 unknown(0) TCGA-4R-AA8I-01 1 186283666 186283666 A - PRG4 3'UTR 0.23 TCGA-4R-AA8I-01 1 197026474 197026474 A G F13B Silent p.H309H 0.05 TCGA-4R-AA8I-01 1 197070523 197070524 - T ASPM Frame_Shift_Ins p.Q2620Tfs*17 0.29 TCGA-4R-AA8I-01 1 197113197 197113197 T C ASPM Missense_Mutation p.T111A 0.32 deleterious(0.02) benign(0.085) TCGA-4R-AA8I-01 1 200880637 200880637 G A C1orf106 Missense_Mutation p.R339H 0.40 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 1 201752586 201752586 G A NAV1 Missense_Mutation p.V804I 0.38 tolerated(0.1) possibly_damaging(0.771) TCGA-4R-AA8I-01 1 202568405 202568407 TCT - SYT2 In_Frame_Del p.K331del 0.34 TCGA-4R-AA8I-01 1 203055146 203055146 G A MYOG 5'UTR 0.08 TCGA-4R-AA8I-01 1 205760779 205760779 T C SLC41A1 Missense_Mutation p.D475G 0.04 deleterious(0) probably_damaging(0.996) TCGA-4R-AA8I-01 1 207648316 207648316 A T CR2 Missense_Mutation p.D824V 0.44 deleterious(0.01) probably_damaging(0.972) TCGA-4R-AA8I-01 1 20931423 20931423 T C CDA Missense_Mutation p.C53R 0.31 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 1 210857113 210857113 C - KCNH1 Frame_Shift_Del p.G827Afs*48 0.24 TCGA-4R-AA8I-01 1 213178563 213178563 T G ANGEL2 Silent p.R316R 0.46 TCGA-4R-AA8I-01 1 217688182 217688182 G A GPATCH2 Missense_Mutation p.P383L 0.41 tolerated(0.3) possibly_damaging(0.536) TCGA-4R-AA8I-01 1 217793392 217793392 A T GPATCH2 Missense_Mutation p.V169E 0.44 deleterious(0.02) possibly_damaging(0.812) TCGA-4R-AA8I-01 1 220387265 220387265 A G RAB3GAP2 Silent p.V79V 0.08 TCGA-4R-AA8I-01 1 222902172 222902172 T C BROX Splice_Site p.X252_splice 0.48 TCGA-4R-AA8I-01 1 225519251 225519251 T C DNAH14 Missense_Mutation p.V3186A 0.39 benign(0.142) TCGA-4R-AA8I-01 1 226556018 226556018 A T PARP1 Missense_Mutation p.V720E 0.29 deleterious(0) possibly_damaging(0.449) TCGA-4R-AA8I-01 1 228399645 228399645 C T OBSCN Missense_Mutation p.A54V 0.44 benign(0.33) TCGA-4R-AA8I-01 1 228596563 228596563 C T TRIM17 Intron 0.48 TCGA-4R-AA8I-01 1 22928128 22928128 G A EPHA8 Missense_Mutation p.R971H 0.40 tolerated(0.13) possibly_damaging(0.893) TCGA-4R-AA8I-01 1 22965607 22965607 G A C1QA Missense_Mutation p.G149S 0.41 deleterious(0.03) probably_damaging(0.931) TCGA-4R-AA8I-01 1 230916293 230916293 C T CAPN9 Silent p.H440H 0.40 TCGA-4R-AA8I-01 1 231488843 231488843 T A SPRTN Missense_Mutation p.D402E 0.45 tolerated(0.58) benign(0.005) TCGA-4R-AA8I-01 1 23191427 23191427 T A EPHB2 Missense_Mutation p.L342Q 0.39 deleterious(0) probably_damaging(0.994) TCGA-4R-AA8I-01 1 2319684 2319684 A G MORN1 Missense_Mutation p.W81R 0.13 tolerated(0.39) benign(0.016) TCGA-4R-AA8I-01 1 232600968 232600968 G A SIPA1L2 Missense_Mutation p.A813V 0.41 deleterious(0.04) probably_damaging(0.998) TCGA-4R-AA8I-01 1 233388186 233388186 G T PCNXL2 Missense_Mutation p.S681Y 0.04 deleterious(0) probably_damaging(0.984) TCGA-4R-AA8I-01 1 235860518 235860519 - G LYST Frame_Shift_Ins p.S3477Qfs*42 0.23 TCGA-4R-AA8I-01 1 236445027 236445027 C G ERO1LB Missense_Mutation p.Q19H 0.05 tolerated_low_confidence(0.55) unknown(0) TCGA-4R-AA8I-01 1 236727799 236727799 T - HEATR1 Frame_Shift_Del p.K1533Rfs*2 0.09 TCGA-4R-AA8I-01 1 236959039 236959039 T C MTR Splice_Site p.X12_splice 0.43 TCGA-4R-AA8I-01 1 23763464 23763464 G A ASAP3 Silent p.G472G 0.41 TCGA-4R-AA8I-01 1 237951398 237951398 T A RYR2 Missense_Mutation p.F4480Y 0.41 possibly_damaging(0.787) TCGA-4R-AA8I-01 1 24119147 24119148 - C LYPLA2 Intron 0.31 TCGA-4R-AA8I-01 1 241680550 241680550 A G FH Missense_Mutation p.Y67H 0.40 deleterious(0.02) possibly_damaging(0.66) TCGA-4R-AA8I-01 1 241901671 241901671 C T WDR64 Missense_Mutation p.R391W 0.38 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 1 2435164 2435164 C A PLCH2 3'UTR 0.59 TCGA-4R-AA8I-01 1 247058005 247058005 G A AHCTF1 Missense_Mutation p.T596M 0.41 deleterious(0) probably_damaging(0.944) TCGA-4R-AA8I-01 1 247150429 247150429 G A ZNF695 Missense_Mutation p.P463L 0.50 deleterious(0.02) benign(0.174) TCGA-4R-AA8I-01 1 247464566 247464566 G A ZNF496 Missense_Mutation p.P340L 0.35 tolerated(0.18) benign(0.003) TCGA-4R-AA8I-01 1 247695764 247695764 C T OR2C3 Missense_Mutation p.G17D 0.36 deleterious(0) possibly_damaging(0.861) TCGA-4R-AA8I-01 1 248436735 248436735 G A OR2T33 Missense_Mutation p.L128F 0.16 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 1 248569984 248569984 A G OR2T1 Missense_Mutation p.E230G 0.30 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 1 248616797 248616797 G T OR2T2 Missense_Mutation p.E233D 0.04 deleterious(0.03) benign(0.021) TCGA-4R-AA8I-01 1 249142190 249142190 C T ZNF672 Silent p.S239S 0.41 TCGA-4R-AA8I-01 1 24995828 24995828 C T SRRM1 Missense_Mutation p.R652C 0.38 unknown(0) TCGA-4R-AA8I-01 1 26586251 26586251 G A CEP85 Silent p.A433A 0.31 TCGA-4R-AA8I-01 1 26609381 26609381 C T UBXN11 Silent p.T375T 0.22 TCGA-4R-AA8I-01 1 27680339 27680339 C T SYTL1 Missense_Mutation p.T562M 0.40 deleterious(0) probably_damaging(0.971) TCGA-4R-AA8I-01 1 27697179 27697179 T A FCN3 Missense_Mutation p.N189I 0.45 deleterious(0.03) benign(0.417) TCGA-4R-AA8I-01 1 27876444 27876444 C T AHDC1 Missense_Mutation p.R728Q 0.37 tolerated(0.07) benign(0.417) TCGA-4R-AA8I-01 1 28598852 28598852 C A SESN2 Missense_Mutation p.Q138K 0.39 tolerated(0.81) benign(0.026) TCGA-4R-AA8I-01 1 28920546 28920547 - G RAB42 Frame_Shift_Ins p.V82Cfs*38 0.33 TCGA-4R-AA8I-01 1 29010172 29010172 A G GMEB1 Silent p.V16V 0.29 TCGA-4R-AA8I-01 1 31441258 31441258 C T PUM1 Missense_Mutation p.A530T 0.06 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-4R-AA8I-01 1 34083155 34083155 G A CSMD2 Missense_Mutation p.R1924C 0.54 deleterious(0) probably_damaging(0.998) TCGA-4R-AA8I-01 1 34090759 34090759 G A CSMD2 Missense_Mutation p.R1758C 0.42 deleterious(0) probably_damaging(0.967) TCGA-4R-AA8I-01 1 35227148 35227148 G A GJB4 Missense_Mutation p.R98H 0.39 deleterious(0.03) probably_damaging(0.996) TCGA-4R-AA8I-01 1 35260244 35260244 C T GJA4 Missense_Mutation p.R144C 0.28 deleterious(0.05) benign(0.017) TCGA-4R-AA8I-01 1 36521336 36521336 A G AGO3 Missense_Mutation p.Y858C 0.05 deleterious(0) probably_damaging(0.998) TCGA-4R-AA8I-01 1 36915910 36915910 G T OSCP1 Missense_Mutation p.L21I 0.32 deleterious(0.01) possibly_damaging(0.489) TCGA-4R-AA8I-01 1 3800376 3800377 - T DFFB 3'UTR 0.32 TCGA-4R-AA8I-01 1 3807306 3807306 C T C1orf174 Missense_Mutation p.G149R 0.40 tolerated(0.37) benign(0.133) TCGA-4R-AA8I-01 1 39352294 39352294 A G RHBDL2 Missense_Mutation p.F265S 0.38 deleterious(0) probably_damaging(0.993) TCGA-4R-AA8I-01 1 39827077 39827077 A G MACF1 Missense_Mutation p.T2105A 0.27 probably_damaging(0.971) TCGA-4R-AA8I-01 1 40771858 40771858 C G COL9A2 Missense_Mutation p.G337A 0.48 deleterious(0.01) probably_damaging(0.939) TCGA-4R-AA8I-01 1 43772515 43772515 C A TIE1 Silent p.S163S 0.47 TCGA-4R-AA8I-01 1 43895374 43895374 C T SZT2 Silent p.S1332S 0.38 TCGA-4R-AA8I-01 1 45279793 45279793 A G BTBD19 3'UTR 0.38 TCGA-4R-AA8I-01 1 45806886 45806886 C T TOE1 Missense_Mutation p.T65M 0.06 deleterious(0.03) possibly_damaging(0.708) TCGA-4R-AA8I-01 1 45974679 45974679 G A MMACHC Missense_Mutation p.R214H 0.41 deleterious(0.05) benign(0.042) TCGA-4R-AA8I-01 1 47583620 47583620 C T CYP4Z1 3'UTR 0.20 TCGA-4R-AA8I-01 1 48696305 48696305 A T SLC5A9 Missense_Mutation p.M205L 0.44 tolerated(1) benign(0.002) TCGA-4R-AA8I-01 1 51439649 51439649 G A CDKN2C Missense_Mutation p.A72T 0.32 tolerated(1) benign(0.057) TCGA-4R-AA8I-01 1 53679110 53679110 C T CPT2 Missense_Mutation p.S607F 0.42 deleterious(0) benign(0.361) TCGA-4R-AA8I-01 1 6202186 6202186 A G CHD5 Splice_Site p.X812_splice 0.37 TCGA-4R-AA8I-01 1 6642238 6642238 C T ZBTB48 Silent p.L271L 0.36 TCGA-4R-AA8I-01 1 6697322 6697322 T C DNAJC11 Missense_Mutation p.D487G 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-4R-AA8I-01 1 68512696 68512696 G A DIRAS3 Silent p.G95G 0.51 TCGA-4R-AA8I-01 1 68905283 68905283 A G RPE65 Missense_Mutation p.F229S 0.46 deleterious(0) probably_damaging(0.968) TCGA-4R-AA8I-01 1 70144102 70144102 A G LRRC7 Missense_Mutation p.Y14C 0.32 deleterious_low_confidence(0) benign(0.004) TCGA-4R-AA8I-01 1 70614318 70614318 T A LRRC40 Missense_Mutation p.T519S 0.36 tolerated(0.77) benign(0.002) TCGA-4R-AA8I-01 1 71437417 71437417 C T PTGER3 Intron 0.37 TCGA-4R-AA8I-01 1 77094388 77094388 C T ST6GALNAC3 Missense_Mutation p.A272V 0.46 probably_damaging(0.993) TCGA-4R-AA8I-01 1 77620074 77620074 A - PIGK Intron 0.28 TCGA-4R-AA8I-01 1 7854025 7854025 C T PER3 Missense_Mutation p.R200W 0.47 deleterious(0.03) possibly_damaging(0.876) TCGA-4R-AA8I-01 1 7887318 7887318 C T PER3 Missense_Mutation p.P769S 0.43 tolerated(0.06) possibly_damaging(0.857) TCGA-4R-AA8I-01 1 89453938 89453940 AGA - CCBL2 In_Frame_Del p.S32del 0.18 TCGA-4R-AA8I-01 1 91977470 91977470 C T CDC7 Missense_Mutation p.R188C 0.05 deleterious(0.02) benign(0.052) TCGA-4R-AA8I-01 1 9795966 9795966 C T CLSTN1 Missense_Mutation p.E571K 0.34 deleterious(0.03) benign(0.005) TCGA-4R-AA8I-01 1 99127263 99127263 G A SNX7 5'Flank 0.64 TCGA-4R-AA8I-01 20 10620156 10620156 T C JAG1 Missense_Mutation p.Y1216C 0.39 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-4R-AA8I-01 20 1281220 1281220 A G SNPH Missense_Mutation p.Y58C 0.03 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 20 14307168 14307168 C T FLRT3 Missense_Mutation p.V329M 0.35 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 20 18365673 18365673 C T DZANK1 Missense_Mutation p.A694T 0.34 tolerated(0.5) benign(0.01) TCGA-4R-AA8I-01 20 18805926 18805926 T C C20orf78 Missense_Mutation p.K34E 0.33 tolerated_low_confidence(0.3) possibly_damaging(0.497) TCGA-4R-AA8I-01 20 20506994 20506994 T G RALGAPA2 Missense_Mutation p.I1199L 0.36 tolerated(0.61) benign(0) TCGA-4R-AA8I-01 20 21687178 21687178 G A PAX1 Missense_Mutation p.G130D 0.31 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 20 23335207 23335207 C T NXT1 3'UTR 0.32 TCGA-4R-AA8I-01 20 23966744 23966744 T A GGTLC1 Silent p.V91V 0.36 TCGA-4R-AA8I-01 20 25604493 25604493 A T NANP Splice_Site p.X30_splice 0.33 TCGA-4R-AA8I-01 20 2635511 2635511 C T NOP56 Missense_Mutation p.R163W 0.30 deleterious(0) benign(0.379) TCGA-4R-AA8I-01 20 2816143 2816143 G A PCED1A Missense_Mutation p.R444W 0.49 tolerated_low_confidence(0.13) benign(0.002) TCGA-4R-AA8I-01 20 3102753 3102753 T C UBOX5 Missense_Mutation p.T178A 0.43 tolerated(0.26) benign(0.086) TCGA-4R-AA8I-01 20 3145661 3145663 CTT - LZTS3 In_Frame_Del p.K487del 0.28 TCGA-4R-AA8I-01 20 32224505 32224505 A - CBFA2T2 Frame_Shift_Del p.T441Qfs*5 0.33 TCGA-4R-AA8I-01 20 33049955 33049955 A T ITCH Silent p.G492G 0.05 TCGA-4R-AA8I-01 20 33330165 33330165 T C NCOA6 Missense_Mutation p.T1299A 0.36 benign(0.001) TCGA-4R-AA8I-01 20 33588879 33588879 G A MYH7B Missense_Mutation p.R1840H 0.41 possibly_damaging(0.747) TCGA-4R-AA8I-01 20 33719574 33719574 T C EDEM2 Missense_Mutation p.I239V 0.33 tolerated(0.18) benign(0.341) TCGA-4R-AA8I-01 20 34090970 34090970 C T CEP250 Silent p.T1591T 0.40 TCGA-4R-AA8I-01 20 34618504 34618504 C - CNBD2 Frame_Shift_Del p.P553Hfs*2 0.23 TCGA-4R-AA8I-01 20 3556555 3556555 A C ATRN Missense_Mutation p.D725A 0.38 deleterious(0.03) benign(0.297) TCGA-4R-AA8I-01 20 3575207 3575207 A G ATRN Missense_Mutation p.D1135G 0.29 deleterious(0) possibly_damaging(0.844) TCGA-4R-AA8I-01 20 35860726 35860726 C - RPN2 Frame_Shift_Del p.T539Pfs*10 0.28 TCGA-4R-AA8I-01 20 37182643 37182643 C T RALGAPB Missense_Mutation p.P1099L 0.22 deleterious(0.03) benign(0.093) TCGA-4R-AA8I-01 20 37536807 37536807 A T PPP1R16B Missense_Mutation p.T389S 0.37 tolerated(0.76) benign(0.034) TCGA-4R-AA8I-01 20 44141453 44141453 G A SPINT3 Silent p.C36C 0.34 TCGA-4R-AA8I-01 20 44469566 44469566 C T SNX21 Missense_Mutation p.R246W 0.53 deleterious(0.01) possibly_damaging(0.634) TCGA-4R-AA8I-01 20 44596429 44596429 C T ZNF335 Missense_Mutation p.R253Q 0.48 deleterious(0) possibly_damaging(0.703) TCGA-4R-AA8I-01 20 44750964 44750964 A G CD40 Missense_Mutation p.T75A 0.39 tolerated(0.14) benign(0.012) TCGA-4R-AA8I-01 20 45242522 45242522 C T SLC13A3 Intron 0.32 TCGA-4R-AA8I-01 20 46307534 46307534 A G SULF2 Missense_Mutation p.V360A 0.51 deleterious(0.03) possibly_damaging(0.824) TCGA-4R-AA8I-01 20 4680843 4680843 C T PRNP 3'UTR 0.48 TCGA-4R-AA8I-01 20 48156217 48156217 C T PTGIS Missense_Mutation p.R188H 0.40 tolerated(0.28) benign(0.007) TCGA-4R-AA8I-01 20 49626762 49626762 C T KCNG1 Silent p.A38A 0.26 TCGA-4R-AA8I-01 20 50408386 50408386 C T SALL4 Silent p.P212P 0.56 TCGA-4R-AA8I-01 20 50408677 50408678 - A SALL4 Frame_Shift_Ins p.S116Lfs*15 0.25 TCGA-4R-AA8I-01 20 52192757 52192757 G A ZNF217 Missense_Mutation p.P849L 0.51 tolerated(0.08) benign(0.051) TCGA-4R-AA8I-01 20 52198883 52198883 G A ZNF217 Silent p.C161C 0.43 TCGA-4R-AA8I-01 20 54978541 54978541 C T CSTF1 Missense_Mutation p.R352C 0.41 deleterious(0.01) benign(0.249) TCGA-4R-AA8I-01 20 57226942 57226942 A T STX16 5'UTR 0.36 TCGA-4R-AA8I-01 20 57242608 57242608 T C STX16 Silent p.G69G 0.48 TCGA-4R-AA8I-01 20 58521499 58521499 A G FAM217B 3'UTR 0.41 TCGA-4R-AA8I-01 20 60838714 60838714 C T OSBPL2 Silent p.S75S 0.41 TCGA-4R-AA8I-01 20 60885264 60885264 G - LAMA5 Frame_Shift_Del p.Y3569Tfs*6 0.19 TCGA-4R-AA8I-01 20 60887270 60887270 T G LAMA5 Missense_Mutation p.S3155R 0.41 benign(0.206) TCGA-4R-AA8I-01 20 61527589 61527589 T A DIDO1 Missense_Mutation p.N737I 0.36 probably_damaging(1) TCGA-4R-AA8I-01 20 61588143 61588143 C T SLC17A9 Missense_Mutation p.T29M 0.41 tolerated(0.79) benign(0.003) TCGA-4R-AA8I-01 20 61834090 61834090 T C YTHDF1 Missense_Mutation p.D401G 0.36 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 20 62198473 62198473 C T HELZ2 Silent p.T746T 0.09 TCGA-4R-AA8I-01 20 6759209 6759209 G A BMP2 Missense_Mutation p.A222T 0.05 tolerated(0.57) benign(0.001) TCGA-4R-AA8I-01 21 33687279 33687279 C T URB1 Missense_Mutation p.A2256T 0.41 tolerated(0.31) benign(0.342) TCGA-4R-AA8I-01 21 33951121 33951121 T A TCP10L Silent p.G127G 0.36 TCGA-4R-AA8I-01 21 34932574 34932574 T C SON Intron 0.37 TCGA-4R-AA8I-01 21 35774505 35774505 T C C21orf140 5'Flank 0.39 TCGA-4R-AA8I-01 21 37600040 37600040 G A DOPEY2 Silent p.V510V 0.38 TCGA-4R-AA8I-01 21 37603120 37603120 A G DOPEY2 Missense_Mutation p.N680D 0.47 tolerated(0.29) benign(0.001) TCGA-4R-AA8I-01 21 38115770 38115770 T C SIM2 Missense_Mutation p.S361P 0.38 tolerated(0.51) benign(0.013) TCGA-4R-AA8I-01 21 38852951 38852951 A - DYRK1A Frame_Shift_Del p.K115Rfs*35 0.24 TCGA-4R-AA8I-01 21 40555335 40555335 A G PSMG1 5'UTR 0.29 TCGA-4R-AA8I-01 21 40714867 40714867 A - HMGN1 3'UTR 0.46 TCGA-4R-AA8I-01 21 41514614 41514615 - G DSCAM Frame_Shift_Ins p.E1093Rfs*47 0.35 TCGA-4R-AA8I-01 21 42540489 42540489 C - BACE2 Frame_Shift_Del p.P102Rfs*25 0.18 TCGA-4R-AA8I-01 21 43239978 43239978 G A PRDM15 Silent p.H1106H 0.53 TCGA-4R-AA8I-01 21 46910776 46910776 G A COL18A1 Silent p.R866R 0.48 TCGA-4R-AA8I-01 21 46934730 46934730 C T SLC19A1 3'UTR 0.82 TCGA-4R-AA8I-01 21 47414118 47414119 - C COL6A1 Frame_Shift_Ins p.V460Rfs*16 0.26 TCGA-4R-AA8I-01 21 47422161 47422161 G A COL6A1 Missense_Mutation p.G699D 0.22 tolerated(0.05) probably_damaging(1) TCGA-4R-AA8I-01 21 47551948 47551948 A G COL6A2 Missense_Mutation p.N848D 0.47 deleterious(0.03) probably_damaging(0.998) TCGA-4R-AA8I-01 21 47848330 47848330 C T PCNT Silent p.L2506L 0.43 TCGA-4R-AA8I-01 21 47848382 47848382 C A PCNT Missense_Mutation p.A2523E 0.46 probably_damaging(0.918) TCGA-4R-AA8I-01 22 17588634 17588634 T A IL17RA Missense_Mutation p.Y355N 0.35 tolerated(0.27) benign(0.021) TCGA-4R-AA8I-01 22 17629383 17629383 C T CECR5 Missense_Mutation p.R133Q 0.20 tolerated(0.32) benign(0.022) TCGA-4R-AA8I-01 22 18022519 18022519 G T CECR2 Missense_Mutation p.C875F 0.50 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-4R-AA8I-01 22 18367051 18367052 - G MICAL3 Intron 0.13 TCGA-4R-AA8I-01 22 19165655 19165655 G A SLC25A1 Missense_Mutation p.R65W 0.07 deleterious(0) probably_damaging(0.925) TCGA-4R-AA8I-01 22 19839777 19839777 C T C22orf29 Missense_Mutation p.R3H 0.36 tolerated_low_confidence(0.57) benign(0.002) TCGA-4R-AA8I-01 22 19907097 19907097 G A TXNRD2 Silent p.A66A 0.37 TCGA-4R-AA8I-01 22 20074009 20074009 G - DGCR8 Frame_Shift_Del p.G176Vfs*27 0.20 TCGA-4R-AA8I-01 22 20229291 20229291 G A RTN4R Silent p.C455C 0.40 TCGA-4R-AA8I-01 22 20458139 20458139 G A RIMBP3 Missense_Mutation p.R1055W 0.17 tolerated(0.1) benign(0.028) TCGA-4R-AA8I-01 22 21470375 21470375 C T KB-1592A4.15 RNA 0.07 TCGA-4R-AA8I-01 22 21470440 21470440 G A KB-1592A4.15 RNA 0.05 TCGA-4R-AA8I-01 22 21900211 21900211 T C RIMBP3C 3'UTR 0.28 TCGA-4R-AA8I-01 22 23438309 23438309 C T GNAZ Missense_Mutation p.R143C 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-4R-AA8I-01 22 24219966 24219966 G A SLC2A11 Missense_Mutation p.G206R 0.36 deleterious(0) probably_damaging(0.987) TCGA-4R-AA8I-01 22 24628858 24628858 C T GGT5 Missense_Mutation p.A177T 0.33 deleterious(0.01) benign(0.099) TCGA-4R-AA8I-01 22 24988238 24988238 G A FAM211B Intron 0.32 TCGA-4R-AA8I-01 22 25777488 25777488 G A LRP5L 5'UTR 0.41 TCGA-4R-AA8I-01 22 26100174 26100174 C T ADRBK2 Silent p.G442G 0.44 TCGA-4R-AA8I-01 22 26306993 26306993 C A MYO18B Silent p.G1780G 0.28 TCGA-4R-AA8I-01 22 29706652 29706652 C T GAS2L1 Nonsense_Mutation p.R256* 0.50 TCGA-4R-AA8I-01 22 29737569 29737569 C T AP1B1 Missense_Mutation p.V573I 0.35 tolerated(0.09) benign(0.435) TCGA-4R-AA8I-01 22 30736780 30736782 CTT - SF3A1 In_Frame_Del p.E364del 0.31 TCGA-4R-AA8I-01 22 31042723 31042723 G A SLC35E4 Missense_Mutation p.R253H 0.49 tolerated(0.65) benign(0.007) TCGA-4R-AA8I-01 22 31059555 31059555 C T DUSP18 Missense_Mutation p.G146S 0.39 tolerated(0.05) probably_damaging(0.987) TCGA-4R-AA8I-01 22 31484696 31484696 T C SMTN Silent p.A102A 0.08 TCGA-4R-AA8I-01 22 31600619 31600619 G A RNF185 3'UTR 0.23 TCGA-4R-AA8I-01 22 32586994 32586994 C T RFPL2 Missense_Mutation p.R301H 0.51 tolerated(0.11) benign(0.001) TCGA-4R-AA8I-01 22 37465129 37465129 G A TMPRSS6 Silent p.G708G 0.44 TCGA-4R-AA8I-01 22 37769104 37769104 G - ELFN2 3'UTR 0.48 TCGA-4R-AA8I-01 22 38016853 38016853 A G GGA1 Missense_Mutation p.D154G 0.32 deleterious(0.03) benign(0.002) TCGA-4R-AA8I-01 22 38315101 38315101 G A MICALL1 Missense_Mutation p.S162N 0.45 deleterious(0) probably_damaging(0.976) TCGA-4R-AA8I-01 22 38470413 38470413 C T PICK1 Missense_Mutation p.R312C 0.23 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 22 39262901 39262901 G A CBX6 Silent p.G184G 0.24 TCGA-4R-AA8I-01 22 39908399 39908399 T C MIEF1 Missense_Mutation p.V162A 0.36 tolerated(1) benign(0.057) TCGA-4R-AA8I-01 22 39918267 39918267 G - ATF4 Frame_Shift_Del p.G240Afs*30 0.27 TCGA-4R-AA8I-01 22 42221953 42221953 G A CCDC134 3'UTR 0.39 TCGA-4R-AA8I-01 22 42229248 42229248 G - SREBF2 5'UTR 0.30 TCGA-4R-AA8I-01 22 43528981 43528981 C T MCAT 3'UTR 0.35 TCGA-4R-AA8I-01 22 44067890 44067890 C T EFCAB6 Missense_Mutation p.V535I 0.37 tolerated(0.96) benign(0.002) TCGA-4R-AA8I-01 22 46829297 46829297 T C CELSR1 Missense_Mutation p.Y1535C 0.28 deleterious(0) probably_damaging(0.992) TCGA-4R-AA8I-01 22 50894775 50894775 A G SBF1 Missense_Mutation p.V1379A 0.45 tolerated(0.12) benign(0.003) TCGA-4R-AA8I-01 2 103311560 103311560 T G SLC9A2 Missense_Mutation p.F525C 0.35 deleterious(0.02) possibly_damaging(0.847) TCGA-4R-AA8I-01 2 108475988 108475988 A G RGPD4 Missense_Mutation p.T538A 0.37 tolerated(0.15) benign(0) TCGA-4R-AA8I-01 2 111416240 111416240 C T BUB1 Silent p.T452T 0.39 TCGA-4R-AA8I-01 2 113976183 113976186 GAAC AAA PAX8 Frame_Shift_Del p.S426Ifs*35 0.19 TCGA-4R-AA8I-01 2 121036312 121036312 C T RALB Silent p.G24G 0.37 TCGA-4R-AA8I-01 2 121746146 121746146 C T GLI2 Nonsense_Mutation p.Q886* 0.42 TCGA-4R-AA8I-01 2 128471170 128471170 G A WDR33 Missense_Mutation p.R1099C 0.31 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-4R-AA8I-01 2 130897479 130897479 C T CCDC74B Missense_Mutation p.S331N 0.37 tolerated(0.34) benign(0.012) TCGA-4R-AA8I-01 2 130939427 130939427 C - SMPD4 5'UTR 0.40 TCGA-4R-AA8I-01 2 130951824 130951824 A T TUBA3E Missense_Mutation p.H197Q 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-4R-AA8I-01 2 132237857 132237857 T A TUBA3D Missense_Mutation p.H197Q 0.14 deleterious_low_confidence(0) benign(0.129) TCGA-4R-AA8I-01 2 132290627 132290627 G A CCDC74A Missense_Mutation p.S331N 0.11 tolerated(0.32) benign(0.007) TCGA-4R-AA8I-01 2 135711218 135711218 A T CCNT2 Missense_Mutation p.D398V 0.70 deleterious(0.01) possibly_damaging(0.776) TCGA-4R-AA8I-01 2 136029454 136029454 G A ZRANB3 Missense_Mutation p.R364C 0.73 deleterious(0.01) benign(0.082) TCGA-4R-AA8I-01 2 136742990 136742990 T A DARS Missense_Mutation p.I17F 0.55 tolerated(0.05) benign(0.001) TCGA-4R-AA8I-01 2 141232790 141232790 A T LRP1B Missense_Mutation p.I3181K 0.76 benign(0.308) TCGA-4R-AA8I-01 2 144313999 144313999 T C ARHGAP15 Silent p.Y316Y 0.77 TCGA-4R-AA8I-01 2 148674907 148674907 A T ACVR2A Missense_Mutation p.H243L 0.72 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 2 152467281 152467281 T - NEB Frame_Shift_Del p.S3969Afs*14 0.30 TCGA-4R-AA8I-01 2 15607895 15607895 A G NBAS Silent p.S637S 0.38 TCGA-4R-AA8I-01 2 15768807 15768807 G A DDX1 Missense_Mutation p.R602Q 0.41 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 2 159526240 159526240 G A PKP4 Missense_Mutation p.A913T 0.64 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 2 16082705 16082705 C T MYCN Silent p.A173A 0.40 TCGA-4R-AA8I-01 2 165556006 165556006 T G COBLL1 Missense_Mutation p.E527D 0.87 tolerated(0.15) benign(0.108) TCGA-4R-AA8I-01 2 166850833 166850833 T G SCN1A Missense_Mutation p.M1559L 0.09 deleterious(0) benign(0.434) TCGA-4R-AA8I-01 2 166850895 166850895 A G SCN1A Missense_Mutation p.V1538A 0.37 deleterious(0.01) benign(0.333) TCGA-4R-AA8I-01 2 1670259 1670259 C T PXDN Splice_Site p.X340_splice 0.45 TCGA-4R-AA8I-01 2 168103817 168103817 A G XIRP2 Missense_Mutation p.N1972S 0.39 benign(0.012) TCGA-4R-AA8I-01 2 168727229 168727229 T C B3GALT1 3'UTR 0.74 TCGA-4R-AA8I-01 2 170396679 170396679 A T FASTKD1 Missense_Mutation p.D609E 0.71 tolerated(0.47) benign(0.046) TCGA-4R-AA8I-01 2 170403008 170403008 G A FASTKD1 Missense_Mutation p.A474V 0.76 deleterious(0.03) benign(0.022) TCGA-4R-AA8I-01 2 176802232 176802232 A G KIAA1715 Silent p.C298C 0.09 TCGA-4R-AA8I-01 2 179411087 179411087 A T TTN Missense_Mutation p.D31657E 0.67 TCGA-4R-AA8I-01 2 182399041 182399041 T C ITGA4 Missense_Mutation p.F943L 0.68 tolerated(0.69) benign(0.034) TCGA-4R-AA8I-01 2 187626496 187626496 A G FAM171B Missense_Mutation p.N476S 0.08 tolerated(0.88) benign(0.006) TCGA-4R-AA8I-01 2 190426694 190426694 G A SLC40A1 Silent p.A542A 0.41 TCGA-4R-AA8I-01 2 190585420 190585420 C T ANKAR Missense_Mutation p.R848W 0.05 deleterious(0.01) benign(0.217) TCGA-4R-AA8I-01 2 191064799 191064799 T C C2orf88 Silent p.C71C 0.37 TCGA-4R-AA8I-01 2 191524471 191524471 C T NAB1 Missense_Mutation p.A190V 0.38 tolerated(0.71) benign(0.098) TCGA-4R-AA8I-01 2 197653948 197653948 C T GTF3C3 Silent p.Q291Q 0.34 TCGA-4R-AA8I-01 2 197712615 197712615 T A PGAP1 Intron 0.53 TCGA-4R-AA8I-01 2 198270138 198270138 G C SF3B1 Missense_Mutation p.A433G 0.43 tolerated(0.06) benign(0.22) TCGA-4R-AA8I-01 2 201355178 201355178 G A KCTD18 Missense_Mutation p.A309V 0.52 tolerated_low_confidence(0.61) benign(0.001) TCGA-4R-AA8I-01 2 203846349 203846349 C T CARF Missense_Mutation p.P544S 0.37 tolerated(0.64) benign(0.02) TCGA-4R-AA8I-01 2 204281668 204281668 A G ABI2 Silent p.E372E 0.29 TCGA-4R-AA8I-01 2 207171520 207171520 G A ZDBF2 Silent p.P756P 0.36 TCGA-4R-AA8I-01 2 208632983 208632984 - G FZD5 Frame_Shift_Ins p.R161Qfs*108 0.23 TCGA-4R-AA8I-01 2 208725985 208725985 A G PLEKHM3 Missense_Mutation p.V651A 0.50 deleterious(0) possibly_damaging(0.478) TCGA-4R-AA8I-01 2 208992994 208992994 C T CRYGC Missense_Mutation p.R153Q 0.32 deleterious(0.04) benign(0.17) TCGA-4R-AA8I-01 2 210880965 210880965 G A RPE Intron 0.05 TCGA-4R-AA8I-01 2 211421371 211421371 A T CPS1 Intron 0.52 TCGA-4R-AA8I-01 2 21225513 21225514 TA - APOB Frame_Shift_Del p.H4260Qfs*10 0.26 TCGA-4R-AA8I-01 2 21265319 21265319 T C APOB Missense_Mutation p.K51E 0.42 possibly_damaging(0.556) TCGA-4R-AA8I-01 2 215852484 215852484 G A ABCA12 Missense_Mutation p.P1288L 0.40 deleterious(0.05) benign(0.015) TCGA-4R-AA8I-01 2 216197219 216197219 T C ATIC Missense_Mutation p.V268A 0.32 deleterious(0.04) probably_damaging(0.963) TCGA-4R-AA8I-01 2 216259426 216259426 T A FN1 Missense_Mutation p.R1207S 0.41 deleterious(0) probably_damaging(0.99) TCGA-4R-AA8I-01 2 217124185 217124186 - G MARCH4 Frame_Shift_Ins p.A362Cfs*31 0.28 TCGA-4R-AA8I-01 2 219222348 219222348 G A C2orf62 Silent p.V70V 0.42 TCGA-4R-AA8I-01 2 219563382 219563382 C T STK36 Missense_Mutation p.R1039C 0.40 deleterious(0.01) probably_damaging(0.972) TCGA-4R-AA8I-01 2 220037323 220037323 G A CNPPD1 Silent p.F406F 0.32 TCGA-4R-AA8I-01 2 220073041 220073041 A G ZFAND2B Silent p.Q166Q 0.30 TCGA-4R-AA8I-01 2 220115838 220115838 G T TUBA4A Missense_Mutation p.L195M 0.10 deleterious_low_confidence(0.04) probably_damaging(1) TCGA-4R-AA8I-01 2 223158717 223158717 A G PAX3 Intron 0.10 TCGA-4R-AA8I-01 2 230652245 230652245 A G TRIP12 Silent p.V1582V 0.42 TCGA-4R-AA8I-01 2 232393179 232393179 C T NMUR1 Missense_Mutation p.V185I 0.58 tolerated(0.7) benign(0.004) TCGA-4R-AA8I-01 2 233899090 233899090 A G NEU2 Missense_Mutation p.T156A 0.11 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 2 234545929 234545929 G A UGT1A10 Missense_Mutation p.R254Q 0.39 deleterious(0.01) possibly_damaging(0.903) TCGA-4R-AA8I-01 2 240029867 240029867 T C HDAC4 Missense_Mutation p.D659G 0.37 deleterious(0.02) benign(0.134) TCGA-4R-AA8I-01 2 242174657 242174657 A G HDLBP Missense_Mutation p.V1008A 0.41 deleterious(0) possibly_damaging(0.86) TCGA-4R-AA8I-01 2 243037160 243037160 G A AC093642.5 RNA 0.16 TCGA-4R-AA8I-01 2 25497864 25497864 G - DNMT3A Frame_Shift_Del p.Y196Tfs*29 0.25 TCGA-4R-AA8I-01 2 26587701 26587701 T A EPT1 Missense_Mutation p.V43E 0.37 deleterious(0.02) benign(0.136) TCGA-4R-AA8I-01 2 26676396 26676396 T C DRC1 Missense_Mutation p.V633A 0.40 deleterious(0.01) possibly_damaging(0.563) TCGA-4R-AA8I-01 2 27930711 27930711 A G AC074091.13 Missense_Mutation p.Y108H 0.44 possibly_damaging(0.607) TCGA-4R-AA8I-01 2 32696085 32696085 T C BIRC6 Missense_Mutation p.V2162A 0.44 benign(0.251) TCGA-4R-AA8I-01 2 32696135 32696135 C T BIRC6 Silent p.L2179L 0.45 TCGA-4R-AA8I-01 2 33500964 33500964 G A LTBP1 Missense_Mutation p.R989H 0.27 tolerated(0.16) benign(0.009) TCGA-4R-AA8I-01 2 33810066 33810066 T C FAM98A Missense_Mutation p.D445G 0.33 deleterious_low_confidence(0) unknown(0) TCGA-4R-AA8I-01 2 33952665 33952665 C T AC009499.1 Intron 0.27 TCGA-4R-AA8I-01 2 3469411 3469411 A G TRAPPC12 Missense_Mutation p.Y574C 0.17 tolerated(0.07) benign(0.012) TCGA-4R-AA8I-01 2 5836958 5836958 G A SOX11 3'UTR 0.26 TCGA-4R-AA8I-01 2 5839947 5839947 T C SOX11 3'UTR 0.44 TCGA-4R-AA8I-01 2 5840055 5840055 A T SOX11 3'UTR 0.03 TCGA-4R-AA8I-01 2 5840802 5840802 T - SOX11 3'UTR 0.30 TCGA-4R-AA8I-01 2 61633160 61633160 C A USP34 Missense_Mutation p.D79Y 0.72 deleterious(0) benign(0.446) TCGA-4R-AA8I-01 2 62733210 62733210 A G TMEM17 Missense_Mutation p.F19L 0.65 tolerated(0.19) benign(0.07) TCGA-4R-AA8I-01 2 70900405 70900405 T A ADD2 Intron 0.78 TCGA-4R-AA8I-01 2 71302745 71302745 G A NAGK Missense_Mutation p.A260T 0.07 deleterious(0) probably_damaging(0.998) TCGA-4R-AA8I-01 2 71650049 71650049 T G ZNF638 Missense_Mutation p.I1135M 0.72 deleterious(0.05) benign(0.003) TCGA-4R-AA8I-01 2 71740432 71740432 T C DYSF Missense_Mutation p.Y175H 0.71 tolerated(0.53) benign(0.003) TCGA-4R-AA8I-01 2 71755509 71755509 A C DYSF Missense_Mutation p.E453A 0.68 deleterious(0.02) probably_damaging(0.909) TCGA-4R-AA8I-01 2 71766312 71766312 G A DYSF Missense_Mutation p.V507M 0.70 deleterious(0) possibly_damaging(0.903) TCGA-4R-AA8I-01 2 73151542 73151542 C T EMX1 Missense_Mutation p.R209C 0.08 deleterious(0.01) possibly_damaging(0.731) TCGA-4R-AA8I-01 2 73520705 73520705 A G EGR4 Missense_Mutation p.L17P 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-4R-AA8I-01 2 73718037 73718038 - T ALMS1 Frame_Shift_Ins p.P2985Sfs*14 0.29 TCGA-4R-AA8I-01 2 74593128 74593128 C T DCTN1 Silent p.L926L 0.44 TCGA-4R-AA8I-01 2 74789369 74789369 T C M1AP Missense_Mutation p.H419R 0.18 deleterious(0.02) benign(0.001) TCGA-4R-AA8I-01 2 77746553 77746553 A G LRRTM4 Silent p.L148L 0.43 TCGA-4R-AA8I-01 2 85788544 85788544 A G GGCX Missense_Mutation p.V3A 0.40 tolerated_low_confidence(0.49) benign(0) TCGA-4R-AA8I-01 2 86437894 86437894 A G MRPL35 3'UTR 0.17 TCGA-4R-AA8I-01 2 95519010 95519010 A G ANKRD20A8P RNA 0.10 TCGA-4R-AA8I-01 2 95540683 95540683 C T TEKT4 Silent p.F292F 0.14 TCGA-4R-AA8I-01 2 96852600 96852600 A T STARD7 Missense_Mutation p.N327K 0.46 tolerated(0.14) benign(0.091) TCGA-4R-AA8I-01 2 97217599 97217599 G A ARID5A Missense_Mutation p.R445H 0.44 deleterious(0.04) probably_damaging(0.999) TCGA-4R-AA8I-01 2 97370575 97370575 C T LMAN2L 3'Flank 0.35 TCGA-4R-AA8I-01 2 97587274 97587275 - T FAM178B Frame_Shift_Ins p.V469Sfs*2 0.26 TCGA-4R-AA8I-01 2 98382614 98382614 C T TMEM131 Silent p.P1562P 0.41 TCGA-4R-AA8I-01 2 98427619 98427619 C T TMEM131 Missense_Mutation p.G647E 0.37 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 2 99294779 99294779 T A MGAT4A Missense_Mutation p.N84Y 0.32 deleterious(0.02) benign(0.23) TCGA-4R-AA8I-01 2 99342846 99342846 A T MGAT4A 5'UTR 0.42 TCGA-4R-AA8I-01 2 99812280 99812280 C T MRPL30 3'UTR 0.30 TCGA-4R-AA8I-01 3 101383437 101383437 T C ZBTB11 Missense_Mutation p.Y582C 0.36 tolerated(0.1) possibly_damaging(0.513) TCGA-4R-AA8I-01 3 101504340 101504340 A C NXPE3 5'UTR 0.45 TCGA-4R-AA8I-01 3 101571016 101571016 A G NFKBIZ Missense_Mutation p.H126R 0.40 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-4R-AA8I-01 3 107798890 107798890 T G CD47 Silent p.V116V 0.40 TCGA-4R-AA8I-01 3 111898494 111898494 T C SLC9C1 Missense_Mutation p.K935E 0.44 tolerated(0.2) possibly_damaging(0.908) TCGA-4R-AA8I-01 3 112358126 112358126 G A CCDC80 Silent p.I209I 0.31 TCGA-4R-AA8I-01 3 113188014 113188014 A G SPICE1 Missense_Mutation p.I228T 0.21 tolerated(0.71) benign(0.015) TCGA-4R-AA8I-01 3 114035402 114035402 A G MIR568 RNA 0.03 TCGA-4R-AA8I-01 3 114070331 114070331 G A ZBTB20 Silent p.G198G 0.10 TCGA-4R-AA8I-01 3 119459480 119459480 A - MAATS1 Frame_Shift_Del p.A542Pfs*5 0.29 TCGA-4R-AA8I-01 3 119530405 119530405 C T NR1I2 Silent p.A156A 0.05 TCGA-4R-AA8I-01 3 121353148 121353148 G A HCLS1 Missense_Mutation p.A270V 0.40 tolerated(0.23) possibly_damaging(0.483) TCGA-4R-AA8I-01 3 122060396 122060396 C T CSTA Silent p.D93D 0.16 TCGA-4R-AA8I-01 3 12790175 12790175 A G TMEM40 Missense_Mutation p.S64P 0.53 deleterious_low_confidence(0.01) possibly_damaging(0.649) TCGA-4R-AA8I-01 3 129284250 129284250 C T PLXND1 Missense_Mutation p.R1485H 0.38 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 3 129824467 129824467 G A FAM86HP RNA 0.31 TCGA-4R-AA8I-01 3 131068626 131068626 T C NEK11 3'UTR 0.42 TCGA-4R-AA8I-01 3 132169658 132169658 A T DNAJC13 Silent p.G168G 0.42 TCGA-4R-AA8I-01 3 13368741 13368741 C T NUP210 Missense_Mutation p.A1495T 0.16 tolerated(0.11) benign(0.001) TCGA-4R-AA8I-01 3 134825375 134825375 G A EPHB1 Silent p.A297A 0.48 TCGA-4R-AA8I-01 3 135825069 135825069 C T PPP2R3A Silent p.N1078N 0.08 TCGA-4R-AA8I-01 3 136141653 136141653 T G STAG1 Missense_Mutation p.Q597P 0.04 deleterious(0.02) benign(0.103) TCGA-4R-AA8I-01 3 136574590 136574590 C T SLC35G2 3'UTR 0.39 TCGA-4R-AA8I-01 3 141162007 141162007 A G ZBTB38 Silent p.K259K 0.33 TCGA-4R-AA8I-01 3 141206050 141206050 G A RASA2 Missense_Mutation p.G42D 0.04 deleterious(0.03) possibly_damaging(0.609) TCGA-4R-AA8I-01 3 141901813 141901813 T A GK5 Missense_Mutation p.T299S 0.35 tolerated(0.28) possibly_damaging(0.491) TCGA-4R-AA8I-01 3 142747455 142747455 A T U2SURP Missense_Mutation p.E526V 0.35 tolerated(0.25) benign(0.029) TCGA-4R-AA8I-01 3 147128096 147128096 C T ZIC1 Missense_Mutation p.S66L 0.38 tolerated(0.21) benign(0.388) TCGA-4R-AA8I-01 3 14724484 14724484 C T C3orf20 Silent p.V88V 0.40 TCGA-4R-AA8I-01 3 148599317 148599317 A C CPA3 Missense_Mutation p.K195N 0.39 tolerated(0.28) probably_damaging(0.946) TCGA-4R-AA8I-01 3 150264602 150264602 A G EIF2A Missense_Mutation p.T5A 0.35 tolerated(0.44) benign(0.001) TCGA-4R-AA8I-01 3 15057748 15057748 C T NR2C2 Silent p.G140G 0.34 TCGA-4R-AA8I-01 3 151012803 151012803 T C GPR87 Missense_Mutation p.I77M 0.38 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 3 151046419 151046419 A G P2RY13 Missense_Mutation p.F142S 0.31 deleterious(0) probably_damaging(0.978) TCGA-4R-AA8I-01 3 151150682 151150682 T - MED12L 3'UTR 0.15 TCGA-4R-AA8I-01 3 15116270 15116270 C T ZFYVE20 Silent p.P458P 0.42 TCGA-4R-AA8I-01 3 152554282 152554282 C T P2RY1 Silent p.Y237Y 0.43 TCGA-4R-AA8I-01 3 153912436 153912436 A G ARHGEF26 Missense_Mutation p.I592V 0.37 tolerated(0.18) possibly_damaging(0.836) TCGA-4R-AA8I-01 3 154146778 154146778 T C GPR149 Silent p.S209S 0.40 TCGA-4R-AA8I-01 3 155861202 155861202 G A KCNAB1 Intron 0.50 TCGA-4R-AA8I-01 3 16639957 16639957 A G DAZL Splice_Site p.X70_splice 0.46 TCGA-4R-AA8I-01 3 171453412 171453412 G A PLD1 Missense_Mutation p.L102F 0.51 deleterious(0.01) benign(0.026) TCGA-4R-AA8I-01 3 178525220 178525220 G A KCNMB2 Missense_Mutation p.R8Q 0.29 tolerated(0.06) benign(0.015) TCGA-4R-AA8I-01 3 179448452 179448452 G A USP13 Silent p.P403P 0.40 TCGA-4R-AA8I-01 3 180378451 180378451 T G CCDC39 Missense_Mutation p.Q141H 0.41 deleterious(0) possibly_damaging(0.535) TCGA-4R-AA8I-01 3 182988028 182988028 T C B3GNT5 Missense_Mutation p.W148R 0.40 tolerated(0.39) benign(0.001) TCGA-4R-AA8I-01 3 183952090 183952090 C - VWA5B2 Frame_Shift_Del p.P244Lfs*37 0.32 TCGA-4R-AA8I-01 3 183955189 183955189 G A VWA5B2 Missense_Mutation p.R570H 0.34 tolerated(0.2) benign(0.001) TCGA-4R-AA8I-01 3 185975727 185975727 A C DGKG Missense_Mutation p.L476V 0.07 deleterious(0) possibly_damaging(0.816) TCGA-4R-AA8I-01 3 190338162 190338162 T C IL1RAP Silent p.C212C 0.21 TCGA-4R-AA8I-01 3 195475922 195475922 C T MUC4 Silent p.T5295T 0.14 TCGA-4R-AA8I-01 3 196674785 196674785 A G PIGZ Missense_Mutation p.V328A 0.52 tolerated(0.05) benign(0.006) TCGA-4R-AA8I-01 3 23631290 23631290 G A UBE2E2 Missense_Mutation p.A192T 0.41 deleterious(0) probably_damaging(0.966) TCGA-4R-AA8I-01 3 33885697 33885697 T C PDCD6IP Missense_Mutation p.Y490H 0.36 deleterious(0.05) probably_damaging(0.967) TCGA-4R-AA8I-01 3 36872532 36872532 C T TRANK1 Missense_Mutation p.A2804T 0.06 tolerated(0.31) benign(0.199) TCGA-4R-AA8I-01 3 36875360 36875360 T C TRANK1 Missense_Mutation p.Y1861C 0.43 tolerated(0.17) benign(0.023) TCGA-4R-AA8I-01 3 37032816 37032816 G A EPM2AIP1 Missense_Mutation p.R585W 0.06 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 3 37035301 37035301 C T MLH1 Intron 0.61 TCGA-4R-AA8I-01 3 37821428 37821428 A G ITGA9 Silent p.A901A 0.32 TCGA-4R-AA8I-01 3 39125659 39125659 A T WDR48 Missense_Mutation p.E396V 0.31 deleterious(0.02) possibly_damaging(0.507) TCGA-4R-AA8I-01 3 39374347 39374347 C A CCR8 Silent p.A175A 0.26 TCGA-4R-AA8I-01 3 41266137 41266137 C T CTNNB1 Missense_Mutation p.S45F 0.37 deleterious(0) probably_damaging(0.954) TCGA-4R-AA8I-01 3 44700367 44700367 A G ZNF35 Missense_Mutation p.K171R 0.02 tolerated(0.05) benign(0.01) TCGA-4R-AA8I-01 3 447547 447547 A G CHL1 3'UTR 0.50 TCGA-4R-AA8I-01 3 46008574 46008574 T C FYCO1 Missense_Mutation p.K751R 0.26 deleterious(0.04) benign(0.006) TCGA-4R-AA8I-01 3 46307586 46307586 C T CCR3 Missense_Mutation p.R334C 0.48 tolerated(0.18) benign(0.018) TCGA-4R-AA8I-01 3 46619474 46619474 G T TDGF1 Missense_Mutation p.K5N 0.38 deleterious_low_confidence(0.02) benign(0.108) TCGA-4R-AA8I-01 3 47047032 47047032 G T NBEAL2 Missense_Mutation p.R2205L 0.04 tolerated(1) benign(0.013) TCGA-4R-AA8I-01 3 47451532 47451532 C - PTPN23 Frame_Shift_Del p.P750Lfs*53 0.10 TCGA-4R-AA8I-01 3 47455478 47455481 CTGT - SCAP Frame_Shift_Del p.T1235Sfs*? 0.41 TCGA-4R-AA8I-01 3 47461047 47461048 - G SCAP Frame_Shift_Ins p.S571Qfs*13 0.26 TCGA-4R-AA8I-01 3 48605066 48605066 C - COL7A1 Frame_Shift_Del p.E2663Sfs*16 0.29 TCGA-4R-AA8I-01 3 48689914 48689914 C T CELSR3 Missense_Mutation p.G1903S 0.45 tolerated(0.33) benign(0.002) TCGA-4R-AA8I-01 3 49070581 49070581 G T QRICH1 Missense_Mutation p.L623M 0.06 deleterious(0) probably_damaging(0.981) TCGA-4R-AA8I-01 3 49751388 49751388 G A RNF123 Silent p.R961R 0.41 TCGA-4R-AA8I-01 3 50145541 50145541 T A RBM5 Nonsense_Mutation p.Y360* 0.28 TCGA-4R-AA8I-01 3 50645848 50645848 T C CISH Missense_Mutation p.D83G 0.32 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 3 52283447 52283447 G A PPM1M Intron 0.46 TCGA-4R-AA8I-01 3 52382985 52382985 C T DNAH1 Missense_Mutation p.R730W 0.36 benign(0.353) TCGA-4R-AA8I-01 3 52417508 52417508 G A DNAH1 Missense_Mutation p.R2683Q 0.30 benign(0.273) TCGA-4R-AA8I-01 3 52428572 52428572 A T DNAH1 Missense_Mutation p.D3573V 0.47 possibly_damaging(0.9) TCGA-4R-AA8I-01 3 52840398 52840398 C T ITIH3 Missense_Mutation p.R678C 0.40 deleterious(0) benign(0.018) TCGA-4R-AA8I-01 3 52874427 52874427 A G TMEM110 3'UTR 0.34 TCGA-4R-AA8I-01 3 53919492 53919492 T C SELK 3'UTR 0.38 TCGA-4R-AA8I-01 3 54354484 54354484 G - CACNA2D3 Frame_Shift_Del p.E74Rfs*6 0.29 TCGA-4R-AA8I-01 3 54958759 54958759 G A LRTM1 Missense_Mutation p.A164V 0.44 tolerated(0.64) benign(0.005) TCGA-4R-AA8I-01 3 55508545 55508545 C T WNT5A Silent p.A168A 0.43 TCGA-4R-AA8I-01 3 63429055 63429055 T - SYNPR Intron 0.27 TCGA-4R-AA8I-01 3 66449417 66449417 C T LRIG1 Silent p.S403S 0.31 TCGA-4R-AA8I-01 3 85961535 85961536 - A CADM2 Frame_Shift_Ins p.E176Rfs*23 0.26 TCGA-4R-AA8I-01 3 85961549 85961549 G A CADM2 Missense_Mutation p.A179T 0.38 tolerated(0.34) benign(0.124) TCGA-4R-AA8I-01 3 8671370 8671370 C T SSUH2 Missense_Mutation p.G190S 0.38 tolerated(0.33) benign(0.069) TCGA-4R-AA8I-01 3 89462400 89462400 T A EPHA3 Missense_Mutation p.D624E 0.37 tolerated(1) benign(0.111) TCGA-4R-AA8I-01 3 89499362 89499363 - C EPHA3 Frame_Shift_Ins p.M847Hfs*26 0.29 TCGA-4R-AA8I-01 3 89528609 89528609 A C EPHA3 Missense_Mutation p.K970T 0.03 deleterious(0) benign(0.019) TCGA-4R-AA8I-01 4 1019080 1019080 A T FGFRL1 Missense_Mutation p.H487L 0.06 deleterious(0) benign(0.116) TCGA-4R-AA8I-01 4 103498147 103498147 T G NFKB1 Silent p.P174P 0.06 TCGA-4R-AA8I-01 4 103528382 103528382 A G NFKB1 Missense_Mutation p.D677G 0.35 deleterious(0.02) benign(0.393) TCGA-4R-AA8I-01 4 106744196 106744196 T C GSTCD Silent p.G442G 0.36 TCGA-4R-AA8I-01 4 107173107 107173107 A T TBCK Missense_Mutation p.D171E 0.31 tolerated(0.51) benign(0.012) TCGA-4R-AA8I-01 4 110791477 110791477 G A LRIT3 Silent p.G524G 0.41 TCGA-4R-AA8I-01 4 121616205 121616206 - A PRDM5 3'UTR 0.25 TCGA-4R-AA8I-01 4 126241913 126241913 A C FAT4 Silent p.A1449A 0.40 TCGA-4R-AA8I-01 4 126412250 126412250 C T FAT4 Missense_Mutation p.A4758V 0.51 benign(0.003) TCGA-4R-AA8I-01 4 1343357 1343357 A G UVSSA Silent p.A48A 0.39 TCGA-4R-AA8I-01 4 140201263 140201263 G A MGARP Missense_Mutation p.A17V 0.40 tolerated(0.08) benign(0.431) TCGA-4R-AA8I-01 4 144135967 144135968 - A USP38 Frame_Shift_Ins p.Q949Tfs*3 0.28 TCGA-4R-AA8I-01 4 145032367 145032367 T - GYPA 3'UTR 0.30 TCGA-4R-AA8I-01 4 146033459 146033459 G A ABCE1 Missense_Mutation p.R260Q 0.39 tolerated(0.05) benign(0.053) TCGA-4R-AA8I-01 4 152622627 152622627 C T PET112 Missense_Mutation p.A351T 0.40 tolerated(0.63) benign(0.004) TCGA-4R-AA8I-01 4 153244121 153244121 T C FBXW7 Missense_Mutation p.N679S 0.45 tolerated(0.23) benign(0.001) TCGA-4R-AA8I-01 4 155158059 155158059 T - DCHS2 Frame_Shift_Del p.N2127Tfs*64 0.24 TCGA-4R-AA8I-01 4 156135360 156135360 C T NPY2R Missense_Mutation p.A90V 0.08 tolerated(0.26) benign(0.26) TCGA-4R-AA8I-01 4 15850369 15850369 C T CD38 3'UTR 0.46 TCGA-4R-AA8I-01 4 159620153 159620153 T A ETFDH Nonsense_Mutation p.Y329* 0.39 TCGA-4R-AA8I-01 4 160264434 160264434 A T RAPGEF2 Silent p.G883G 0.38 TCGA-4R-AA8I-01 4 164246566 164246566 T A NPY1R Missense_Mutation p.E348D 0.37 tolerated(0.07) benign(0.269) TCGA-4R-AA8I-01 4 164272694 164272694 T C NPY5R Silent p.I423I 0.39 TCGA-4R-AA8I-01 4 166243340 166243340 G A KLHL2 3'UTR 0.48 TCGA-4R-AA8I-01 4 166987010 166987010 T C TLL1 Missense_Mutation p.F728S 0.36 deleterious(0.01) possibly_damaging(0.628) TCGA-4R-AA8I-01 4 170625277 170625277 C T CLCN3 Silent p.V564V 0.37 TCGA-4R-AA8I-01 4 174450400 174450400 T C HAND2 Missense_Mutation p.H14R 0.38 tolerated(0.21) possibly_damaging(0.507) TCGA-4R-AA8I-01 4 175649683 175649683 G A GLRA3 Missense_Mutation p.T145I 0.05 deleterious(0) possibly_damaging(0.874) TCGA-4R-AA8I-01 4 17590466 17590466 G T LAP3 Missense_Mutation p.Q243H 0.41 deleterious(0.02) benign(0.097) TCGA-4R-AA8I-01 4 17649411 17649411 G A FAM184B Missense_Mutation p.S732L 0.24 deleterious(0) possibly_damaging(0.748) TCGA-4R-AA8I-01 4 178283576 178283576 T C NEIL3 Missense_Mutation p.F590S 0.44 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 4 183815749 183815749 G A DCTD Missense_Mutation p.A96V 0.24 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 4 1980852 1980852 G A WHSC1 3'UTR 0.64 TCGA-4R-AA8I-01 4 22389385 22389385 A G GPR125 Silent p.G1303G 0.41 TCGA-4R-AA8I-01 4 23833257 23833257 T C PPARGC1A Missense_Mutation p.T118A 0.05 tolerated(1) benign(0.194) TCGA-4R-AA8I-01 4 25005399 25005399 G A LGI2 Missense_Mutation p.R438C 0.46 tolerated(0.09) benign(0.083) TCGA-4R-AA8I-01 4 25398360 25398360 T G ANAPC4 Missense_Mutation p.L379R 0.16 deleterious(0) probably_damaging(0.993) TCGA-4R-AA8I-01 4 3241599 3241599 G C HTT Missense_Mutation p.G3081A 0.42 probably_damaging(0.98) TCGA-4R-AA8I-01 4 37446811 37446811 C T KIAA1239 Silent p.S1067S 0.40 TCGA-4R-AA8I-01 4 39458043 39458043 C A RPL9 Missense_Mutation p.R125M 0.40 deleterious(0.01) benign(0.382) TCGA-4R-AA8I-01 4 39891910 39891910 C A PDS5A Missense_Mutation p.L615F 0.34 deleterious(0) probably_damaging(0.996) TCGA-4R-AA8I-01 4 41621359 41621359 C T LIMCH1 Silent p.Y279Y 0.49 TCGA-4R-AA8I-01 4 54232118 54232118 T C SCFD2 5'UTR 0.33 TCGA-4R-AA8I-01 4 56883871 56883871 T C CEP135 Missense_Mutation p.S954P 0.04 tolerated(0.09) possibly_damaging(0.636) TCGA-4R-AA8I-01 4 5696122 5696122 A - EVC2 Frame_Shift_Del p.F130Lfs*17 0.29 TCGA-4R-AA8I-01 4 57181271 57181271 C T KIAA1211 Missense_Mutation p.R535W 0.40 deleterious(0) possibly_damaging(0.835) TCGA-4R-AA8I-01 4 57777460 57777460 A G REST Missense_Mutation p.D219G 0.40 tolerated(0.14) probably_damaging(0.998) TCGA-4R-AA8I-01 4 62849207 62849207 T C LPHN3 Missense_Mutation p.F973S 0.07 deleterious(0) probably_damaging(0.992) TCGA-4R-AA8I-01 4 663996 663997 - A PDE6B 3'UTR 0.21 TCGA-4R-AA8I-01 4 6711572 6711572 A G MRFAP1L1 5'UTR 0.07 TCGA-4R-AA8I-01 4 6925097 6925097 T A TBC1D14 Intron 0.42 TCGA-4R-AA8I-01 4 70810695 70810695 A - CSN1S1 Frame_Shift_Del p.N179Ifs*16 0.32 TCGA-4R-AA8I-01 4 71394475 71394475 G A AMTN Silent p.Q110Q 0.36 TCGA-4R-AA8I-01 4 71532164 71532164 A T IGJ Missense_Mutation p.I15N 0.04 tolerated(0.06) benign(0.003) TCGA-4R-AA8I-01 4 73149372 73149372 C T ADAMTS3 Silent p.L1033L 0.41 TCGA-4R-AA8I-01 4 74719172 74719172 C T PF4V1 Silent p.F31F 0.38 TCGA-4R-AA8I-01 4 76811198 76811198 A G PPEF2 Missense_Mutation p.V110A 0.17 deleterious(0.05) probably_damaging(0.999) TCGA-4R-AA8I-01 4 77069533 77069533 G C NUP54 5'UTR 0.02 TCGA-4R-AA8I-01 4 77300543 77300543 T A CCDC158 Missense_Mutation p.N310I 0.47 deleterious(0) probably_damaging(0.997) TCGA-4R-AA8I-01 4 7783227 7783227 T A AFAP1 Missense_Mutation p.D553V 0.46 deleterious(0.05) benign(0.007) TCGA-4R-AA8I-01 4 8031388 8031389 - G ABLIM2 Frame_Shift_Ins p.R388Pfs*12 0.28 TCGA-4R-AA8I-01 4 84358187 84358187 G A HELQ Silent p.G624G 0.43 TCGA-4R-AA8I-01 4 85419145 85419145 C - NKX6-1 Frame_Shift_Del p.L80Sfs*23 0.30 TCGA-4R-AA8I-01 4 86491687 86491687 G T ARHGAP24 5'UTR 0.22 TCGA-4R-AA8I-01 4 86916149 86916149 A - ARHGAP24 Frame_Shift_Del p.T449Pfs*17 0.25 TCGA-4R-AA8I-01 4 87622823 87622823 G A PTPN13 Missense_Mutation p.G355D 0.42 deleterious(0.03) benign(0.23) TCGA-4R-AA8I-01 4 88239575 88239575 T C HSD17B13 Missense_Mutation p.E75G 0.04 deleterious(0.02) possibly_damaging(0.812) TCGA-4R-AA8I-01 4 88903791 88903791 C T SPP1 Silent p.L230L 0.42 TCGA-4R-AA8I-01 4 89618583 89618583 T - NAP1L5 Frame_Shift_Del p.K108Sfs*82 0.25 TCGA-4R-AA8I-01 4 89689146 89689146 A G FAM13A Missense_Mutation p.M508T 0.29 tolerated(0.46) benign(0.001) TCGA-4R-AA8I-01 4 92519977 92519977 C T CCSER1 Silent p.T824T 0.32 TCGA-4R-AA8I-01 5 110074819 110074819 C T SLC25A46 5'UTR 0.38 TCGA-4R-AA8I-01 5 113740534 113740534 A C KCNN2 Missense_Mutation p.T328P 0.04 deleterious(0.04) probably_damaging(0.96) TCGA-4R-AA8I-01 5 114462349 114462349 A G TRIM36 Missense_Mutation p.Y680H 0.47 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 5 114916490 114916490 G A TMED7-TICAM2 Missense_Mutation p.T324M 0.34 deleterious_low_confidence(0) benign(0.245) TCGA-4R-AA8I-01 5 115338562 115338562 A - AQPEP Frame_Shift_Del p.N619Mfs*7 0.29 TCGA-4R-AA8I-01 5 121356208 121356208 T A SRFBP1 Missense_Mutation p.Y260N 0.39 deleterious(0) possibly_damaging(0.903) TCGA-4R-AA8I-01 5 123984368 123984368 A C ZNF608 Missense_Mutation p.L570R 0.05 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 5 129072962 129072963 - AC ADAMTS19 3'UTR 0.35 TCGA-4R-AA8I-01 5 131007515 131007515 A G FNIP1 Silent p.C874C 0.05 TCGA-4R-AA8I-01 5 132069913 132069913 T A KIF3A Silent p.V88V 0.40 TCGA-4R-AA8I-01 5 132150795 132150795 A G SOWAHA Silent p.R494R 0.41 TCGA-4R-AA8I-01 5 132159057 132159057 C T SHROOM1 Missense_Mutation p.R704Q 0.37 tolerated(0.05) probably_damaging(0.999) TCGA-4R-AA8I-01 5 133901859 133901859 C T JADE2 Silent p.H341H 0.06 TCGA-4R-AA8I-01 5 1341809 1341809 G A CLPTM1L Missense_Mutation p.L144F 0.05 deleterious(0) probably_damaging(0.967) TCGA-4R-AA8I-01 5 137228299 137228299 G T PKD2L2 Missense_Mutation p.W88C 0.42 deleterious(0) probably_damaging(0.967) TCGA-4R-AA8I-01 5 137520571 137520571 C G KIF20A Missense_Mutation p.H587D 0.03 deleterious(0.01) benign(0.004) TCGA-4R-AA8I-01 5 138163312 138163312 T C CTNNA1 Missense_Mutation p.S323P 0.35 deleterious(0.03) benign(0.261) TCGA-4R-AA8I-01 5 138209301 138209301 C T LRRTM2 Missense_Mutation p.A317T 0.38 tolerated(0.35) benign(0.018) TCGA-4R-AA8I-01 5 13911493 13911493 A C DNAH5 Splice_Site p.X548_splice 0.40 TCGA-4R-AA8I-01 5 139939980 139939980 C A APBB3 Missense_Mutation p.G388V 0.23 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 5 139941428 139941428 C A APBB3 Splice_Site p.X211_splice 0.26 TCGA-4R-AA8I-01 5 140167660 140167660 C T PCDHA1 Silent p.R595R 0.39 TCGA-4R-AA8I-01 5 140237443 140237443 G T PCDHA10 Missense_Mutation p.A604S 0.46 deleterious_low_confidence(0.01) probably_damaging(0.934) TCGA-4R-AA8I-01 5 140347456 140347456 G A PCDHAC2 Missense_Mutation p.D369N 0.26 deleterious(0) benign(0.071) TCGA-4R-AA8I-01 5 140605037 140605037 G A PCDHB14 Missense_Mutation p.A654T 0.36 tolerated_low_confidence(0.19) benign(0.088) TCGA-4R-AA8I-01 5 140764204 140764204 C T PCDHGA7 Missense_Mutation p.R580C 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-4R-AA8I-01 5 140782735 140782735 G A PCDHGA9 Silent p.T72T 0.07 TCGA-4R-AA8I-01 5 140857742 140857742 A - PCDHGC3 Frame_Shift_Del p.N689Ifs*10 0.33 TCGA-4R-AA8I-01 5 140955840 140955840 T G DIAPH1 Missense_Mutation p.K473T 0.39 unknown(0) TCGA-4R-AA8I-01 5 141336556 141336556 C A PCDH12 Missense_Mutation p.M287I 0.08 tolerated(0.19) benign(0.002) TCGA-4R-AA8I-01 5 145609290 145609290 A - RBM27 Frame_Shift_Del p.R138Efs*39 0.29 TCGA-4R-AA8I-01 5 145631366 145631366 C T RBM27 Missense_Mutation p.P458S 0.55 tolerated_low_confidence(0.1) benign(0.003) TCGA-4R-AA8I-01 5 145634549 145634549 T C RBM27 Silent p.I496I 0.28 TCGA-4R-AA8I-01 5 147281302 147281302 G A C5orf46 Silent p.D35D 0.37 TCGA-4R-AA8I-01 5 148442612 148442612 G A SH3TC2 5'UTR 0.37 TCGA-4R-AA8I-01 5 149324081 149324081 C T PDE6A Silent p.P52P 0.35 TCGA-4R-AA8I-01 5 149421470 149421470 G A HMGXB3 Missense_Mutation p.A890T 0.27 tolerated(0.1) benign(0.145) TCGA-4R-AA8I-01 5 149901211 149901211 G A NDST1 Missense_Mutation p.R132H 0.37 deleterious(0.02) benign(0.344) TCGA-4R-AA8I-01 5 150410290 150410290 C - TNIP1 Frame_Shift_Del p.R632Lfs*22 0.25 TCGA-4R-AA8I-01 5 150660598 150660598 C T SLC36A3 Missense_Mutation p.R415H 0.31 deleterious(0) probably_damaging(0.994) TCGA-4R-AA8I-01 5 151043687 151043687 C T SPARC Missense_Mutation p.A282T 0.05 tolerated(0.54) probably_damaging(0.98) TCGA-4R-AA8I-01 5 153030021 153030021 C T GRIA1 Missense_Mutation p.R208W 0.37 deleterious(0) probably_damaging(0.946) TCGA-4R-AA8I-01 5 156353300 156353300 G A TIMD4 Nonsense_Mutation p.Q290* 0.28 TCGA-4R-AA8I-01 5 156816337 156816337 C T CYFIP2 Silent p.G1090G 0.23 TCGA-4R-AA8I-01 5 15928504 15928504 C - FBXL7 Frame_Shift_Del p.E213Nfs*2 0.13 TCGA-4R-AA8I-01 5 15936735 15936735 C T FBXL7 Missense_Mutation p.R306C 0.06 deleterious(0) probably_damaging(0.998) TCGA-4R-AA8I-01 5 162887001 162887001 C T NUDCD2 Missense_Mutation p.G19D 0.41 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 5 16818199 16818199 A G MYO10 Silent p.D66D 0.44 TCGA-4R-AA8I-01 5 169116263 169116263 T C DOCK2 Missense_Mutation p.Y257H 0.40 deleterious(0.03) probably_damaging(0.984) TCGA-4R-AA8I-01 5 170738422 170738422 A G TLX3 Missense_Mutation p.E232G 0.07 deleterious(0.01) benign(0.001) TCGA-4R-AA8I-01 5 172410766 172410766 C A ATP6V0E1 5'UTR 0.50 TCGA-4R-AA8I-01 5 17353924 17353924 G A CTD-2139B15.2 5'Flank 0.34 TCGA-4R-AA8I-01 5 17354198 17354198 A G CTD-2139B15.2 Intron 0.05 TCGA-4R-AA8I-01 5 175111511 175111511 A G HRH2 Intron 0.46 TCGA-4R-AA8I-01 5 176025680 176025680 G A GPRIN1 Missense_Mutation p.R386C 0.45 tolerated(0.08) benign(0.188) TCGA-4R-AA8I-01 5 176520464 176520464 C T FGFR4 Missense_Mutation p.R437C 0.36 deleterious(0) probably_damaging(0.998) TCGA-4R-AA8I-01 5 176827232 176827232 C T PFN3 Missense_Mutation p.V116I 0.39 tolerated(0.08) benign(0.364) TCGA-4R-AA8I-01 5 177059248 177059248 T C RP11-1277A3.2 Intron 0.39 TCGA-4R-AA8I-01 5 178310742 178310742 T A ZNF354B Missense_Mutation p.I430K 0.37 tolerated(0.76) benign(0.1) TCGA-4R-AA8I-01 5 178359758 178359758 A G ZFP2 3'UTR 0.39 TCGA-4R-AA8I-01 5 178392816 178392816 A - ZNF454 Frame_Shift_Del p.I472Sfs*12 0.27 TCGA-4R-AA8I-01 5 179201140 179201140 G A MAML1 Silent p.P771P 0.36 TCGA-4R-AA8I-01 5 180472566 180472566 T C BTNL9 Missense_Mutation p.L26P 0.33 deleterious(0.01) probably_damaging(0.993) TCGA-4R-AA8I-01 5 180650958 180650959 - C TRIM41 5'UTR 0.24 TCGA-4R-AA8I-01 5 24509863 24509863 A T CDH10 Missense_Mutation p.D356E 0.23 tolerated(0.12) possibly_damaging(0.882) TCGA-4R-AA8I-01 5 32088757 32088757 G T PDZD2 Nonsense_Mutation p.E1735* 0.40 TCGA-4R-AA8I-01 5 32790794 32790794 A G NPR3 3'UTR 0.27 TCGA-4R-AA8I-01 5 34935891 34935891 C T DNAJC21 Missense_Mutation p.R90C 0.39 tolerated(0.08) benign(0.005) TCGA-4R-AA8I-01 5 41382215 41382215 A - PLCXD3 Frame_Shift_Del p.F175Lfs*7 0.27 TCGA-4R-AA8I-01 5 41934527 41934527 A T FBXO4 Intron 0.55 TCGA-4R-AA8I-01 5 5140635 5140635 G A ADAMTS16 Missense_Mutation p.A19T 0.26 tolerated_low_confidence(0.25) probably_damaging(0.977) TCGA-4R-AA8I-01 5 66479474 66479474 T C CD180 Silent p.Q399Q 0.39 TCGA-4R-AA8I-01 5 72864403 72864403 C T UTP15 Silent p.P114P 0.41 TCGA-4R-AA8I-01 5 73128204 73128204 A G ARHGEF28 Missense_Mutation p.T356A 0.07 tolerated(0.11) benign(0.002) TCGA-4R-AA8I-01 5 73179659 73179659 G A ARHGEF28 Missense_Mutation p.R1002H 0.42 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 5 74650434 74650434 T C HMGCR Missense_Mutation p.V492A 0.46 deleterious(0.02) possibly_damaging(0.548) TCGA-4R-AA8I-01 5 76342271 76342271 A G AGGF1 Missense_Mutation p.I324V 0.05 tolerated(0.41) benign(0) TCGA-4R-AA8I-01 5 7706967 7706967 C A ADCY2 Nonsense_Mutation p.S407* 0.22 TCGA-4R-AA8I-01 5 77072145 77072145 A G TBCA 5'UTR 0.39 TCGA-4R-AA8I-01 5 77423904 77423904 G A AP3B1 Missense_Mutation p.P640S 0.35 deleterious(0) benign(0.258) TCGA-4R-AA8I-01 5 7867406 7867406 T C FASTKD3 Missense_Mutation p.Q264R 0.42 deleterious(0) probably_damaging(0.98) TCGA-4R-AA8I-01 5 79033682 79033682 T A CMYA5 Missense_Mutation p.S3032T 0.41 benign(0.007) TCGA-4R-AA8I-01 5 79734315 79734315 C T ZFYVE16 Missense_Mutation p.T604I 0.45 tolerated(0.21) benign(0.006) TCGA-4R-AA8I-01 5 79773294 79773294 T A ZFYVE16 3'UTR 0.31 TCGA-4R-AA8I-01 5 81608577 81608577 C T ATP6AP1L Silent p.R93R 0.04 TCGA-4R-AA8I-01 5 82836430 82836430 A - VCAN Frame_Shift_Del p.K2538Nfs*8 0.30 TCGA-4R-AA8I-01 5 87494886 87494886 A G TMEM161B Silent p.S332S 0.04 TCGA-4R-AA8I-01 5 92923770 92923770 G A NR2F1 Missense_Mutation p.G204D 0.41 deleterious(0.01) possibly_damaging(0.833) TCGA-4R-AA8I-01 5 92929557 92929557 C T NR2F1 3'UTR 0.36 TCGA-4R-AA8I-01 6 107391602 107391602 C - BEND3 Frame_Shift_Del p.D265Tfs*54 0.37 TCGA-4R-AA8I-01 6 10764807 10764808 - C MAK Frame_Shift_Ins p.Q584Afs*8 0.18 TCGA-4R-AA8I-01 6 123127438 123127438 A - SMPDL3A Frame_Shift_Del p.K328Nfs*28 0.43 TCGA-4R-AA8I-01 6 13273361 13273361 G A TBC1D7 Intron 0.60 TCGA-4R-AA8I-01 6 132859536 132859536 C T TAAR9 Silent p.Y36Y 0.05 TCGA-4R-AA8I-01 6 133055870 133055870 T C VNN3 5'Flank 0.72 TCGA-4R-AA8I-01 6 138576784 138576784 G A KIAA1244 Missense_Mutation p.E328K 0.49 deleterious(0) benign(0.249) TCGA-4R-AA8I-01 6 138584499 138584499 G A KIAA1244 Missense_Mutation p.V627M 0.38 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-4R-AA8I-01 6 142764795 142764796 - T GPR126 3'UTR 0.36 TCGA-4R-AA8I-01 6 147706163 147706163 C A STXBP5 3'Flank 0.65 TCGA-4R-AA8I-01 6 152332874 152332874 C T ESR1 Missense_Mutation p.R394C 0.25 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 6 155578991 155578991 G A TFB1M Silent p.D340D 0.50 TCGA-4R-AA8I-01 6 16327684 16327684 G - ATXN1 Frame_Shift_Del p.S287Pfs*38 0.22 TCGA-4R-AA8I-01 6 167754936 167754936 G A TTLL2 Silent p.T516T 0.66 TCGA-4R-AA8I-01 6 170123958 170123959 - G PHF10 Frame_Shift_Ins p.G24Rfs*8 0.65 TCGA-4R-AA8I-01 6 20152967 20152967 A G MBOAT1 Missense_Mutation p.F45L 0.13 tolerated(1) benign(0.001) TCGA-4R-AA8I-01 6 20490697 20490697 T - E2F3 3'UTR 0.35 TCGA-4R-AA8I-01 6 21597747 21597753 TTTTTTC - SOX4 3'UTR 0.34 TCGA-4R-AA8I-01 6 22570437 22570437 C T HDGFL1 Silent p.G211G 0.17 TCGA-4R-AA8I-01 6 25538179 25538179 C T LRRC16A Missense_Mutation p.R722W 0.18 deleterious(0) possibly_damaging(0.582) TCGA-4R-AA8I-01 6 26018017 26018017 A - HIST1H1A 5'UTR 0.12 TCGA-4R-AA8I-01 6 26056197 26056197 T C HIST1H1C Missense_Mutation p.T154A 0.28 deleterious(0.01) unknown(0) TCGA-4R-AA8I-01 6 26598247 26598247 G A ABT1 Missense_Mutation p.R116H 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-4R-AA8I-01 6 27107217 27107217 G A HIST1H4I Missense_Mutation p.V44M 0.15 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-4R-AA8I-01 6 27792061 27792061 G T HIST1H4J Missense_Mutation p.E53D 0.26 tolerated(0.14) benign(0.012) TCGA-4R-AA8I-01 6 29365183 29365183 C T OR12D2 Missense_Mutation p.A236V 0.34 tolerated(0.05) possibly_damaging(0.71) TCGA-4R-AA8I-01 6 29797328 29797328 C T HLA-G Silent p.D251D 0.27 TCGA-4R-AA8I-01 6 30029708 30029708 G A ZNRD1 Missense_Mutation p.V54I 0.35 tolerated(0.34) benign(0.003) TCGA-4R-AA8I-01 6 30139690 30139692 AGA - TRIM15 In_Frame_Del p.K323del 0.29 TCGA-4R-AA8I-01 6 30668004 30668004 T A MDC1 3'UTR 0.22 TCGA-4R-AA8I-01 6 30864468 30864468 C T DDR1 Silent p.S565S 0.19 TCGA-4R-AA8I-01 6 30881751 30881751 T G GTF2H4 Missense_Mutation p.H460Q 0.30 tolerated(0.44) benign(0.001) TCGA-4R-AA8I-01 6 31084588 31084588 A C CDSN Silent p.V268V 0.20 TCGA-4R-AA8I-01 6 31507027 31507027 G A DDX39B Missense_Mutation p.A79V 0.33 deleterious(0.03) possibly_damaging(0.706) TCGA-4R-AA8I-01 6 31846769 31846769 C T SLC44A4 5'UTR 0.25 TCGA-4R-AA8I-01 6 32138331 32138331 G A AGPAT1 Silent p.R127R 0.26 TCGA-4R-AA8I-01 6 32149317 32149317 A G AGER Intron 0.29 TCGA-4R-AA8I-01 6 33608281 33608281 T C ITPR3 Missense_Mutation p.V37A 0.31 deleterious(0) probably_damaging(0.983) TCGA-4R-AA8I-01 6 33693356 33693356 C T IP6K3 Silent p.T209T 0.30 TCGA-4R-AA8I-01 6 35056409 35056409 C A ANKS1A 3'UTR 0.27 TCGA-4R-AA8I-01 6 36198408 36198408 C T BRPF3 3'UTR 0.07 TCGA-4R-AA8I-01 6 36867219 36867219 A T C6orf89 Missense_Mutation p.D7V 0.43 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-4R-AA8I-01 6 40996017 40996017 T C UNC5CL 3'UTR 0.25 TCGA-4R-AA8I-01 6 40996076 40996076 G A UNC5CL 3'UTR 0.13 TCGA-4R-AA8I-01 6 42195939 42195939 T - TRERF1 3'UTR 0.21 TCGA-4R-AA8I-01 6 42200601 42200601 G A TRERF1 Silent p.G1032G 0.15 TCGA-4R-AA8I-01 6 42713333 42713333 G - TBCC Frame_Shift_Del p.P160Rfs*49 0.15 TCGA-4R-AA8I-01 6 42796557 42796557 G A GLTSCR1L Silent p.T162T 0.23 TCGA-4R-AA8I-01 6 42975948 42975948 C T PPP2R5D Silent p.Y289Y 0.13 TCGA-4R-AA8I-01 6 43022091 43022091 C - MRPL2 Frame_Shift_Del p.G280Afs*13 0.17 TCGA-4R-AA8I-01 6 43023917 43023917 A G MRPL2 Missense_Mutation p.L141P 0.39 deleterious(0) probably_damaging(0.995) TCGA-4R-AA8I-01 6 43190596 43190596 A G CUL9 Missense_Mutation p.N2371S 0.23 tolerated(0.66) benign(0.001) TCGA-4R-AA8I-01 6 43267678 43267678 T C SLC22A7 Missense_Mutation p.V234A 0.09 deleterious(0) possibly_damaging(0.816) TCGA-4R-AA8I-01 6 43402386 43402386 C T ABCC10 Missense_Mutation p.R470W 0.11 deleterious(0) probably_damaging(0.993) TCGA-4R-AA8I-01 6 43412531 43412531 C T ABCC10 Missense_Mutation p.R899W 0.18 deleterious(0) probably_damaging(0.93) TCGA-4R-AA8I-01 6 43526266 43526266 G A XPO5 Silent p.S428S 0.10 TCGA-4R-AA8I-01 6 46656045 46656045 G T TDRD6 Missense_Mutation p.W60C 0.10 tolerated(0.15) benign(0.064) TCGA-4R-AA8I-01 6 46874483 46874483 C G GPR116 Missense_Mutation p.R6T 0.33 tolerated(0.43) benign(0.007) TCGA-4R-AA8I-01 6 47682484 47682484 A G GPR115 Silent p.G501G 0.35 TCGA-4R-AA8I-01 6 49519361 49519361 A G C6orf141 3'UTR 0.31 TCGA-4R-AA8I-01 6 56765220 56765220 G T DST Missense_Mutation p.P139H 0.29 deleterious_low_confidence(0) benign(0.001) TCGA-4R-AA8I-01 6 70866035 70866035 G A COL19A1 Missense_Mutation p.C699Y 0.08 deleterious(0) probably_damaging(0.998) TCGA-4R-AA8I-01 6 71603972 71603972 G A B3GAT2 Nonsense_Mutation p.R199* 0.85 TCGA-4R-AA8I-01 6 7231535 7231535 T C RREB1 Missense_Mutation p.I1068T 0.74 deleterious(0) probably_damaging(0.91) TCGA-4R-AA8I-01 6 7883305 7883305 G A TXNDC5 3'UTR 0.20 TCGA-4R-AA8I-01 6 82891683 82891683 T - IBTK Frame_Shift_Del p.K1213Sfs*50 0.40 TCGA-4R-AA8I-01 6 86333797 86333797 T C SYNCRIP Missense_Mutation p.I234V 0.08 deleterious(0.01) benign(0.019) TCGA-4R-AA8I-01 6 87967623 87967623 A T ZNF292 Missense_Mutation p.I1426F 0.46 deleterious(0.04) probably_damaging(0.998) TCGA-4R-AA8I-01 6 96035216 96035216 A G MANEA Intron 0.71 TCGA-4R-AA8I-01 7 100084550 100084550 G T NYAP1 Missense_Mutation p.G59C 0.07 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 7 100159952 100159952 C T AGFG2 Silent p.D316D 0.43 TCGA-4R-AA8I-01 7 100678585 100678585 C T MUC17 Silent p.S1296S 0.49 TCGA-4R-AA8I-01 7 100797686 100797686 G - AP1S1 5'UTR 0.19 TCGA-4R-AA8I-01 7 101892400 101892400 A G CUX1 3'UTR 0.50 TCGA-4R-AA8I-01 7 102953447 102953447 T - DNAJC2 Frame_Shift_Del p.I580* 0.13 TCGA-4R-AA8I-01 7 103014890 103014890 C T SLC26A5 Missense_Mutation p.E731K 0.43 tolerated(0.08) benign(0.074) TCGA-4R-AA8I-01 7 111368349 111368349 C T DOCK4 Missense_Mutation p.R1961H 0.04 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-4R-AA8I-01 7 111584884 111584884 C T DOCK4 Missense_Mutation p.V276M 0.41 deleterious(0) possibly_damaging(0.791) TCGA-4R-AA8I-01 7 117832158 117832158 T A NAA38 3'UTR 0.36 TCGA-4R-AA8I-01 7 121733126 121733126 G A AASS Missense_Mutation p.P581L 0.36 deleterious(0.01) possibly_damaging(0.904) TCGA-4R-AA8I-01 7 12381716 12381716 T C VWDE Silent p.K1413K 0.49 TCGA-4R-AA8I-01 7 12729168 12729168 T A ARL4A 3'UTR 0.41 TCGA-4R-AA8I-01 7 134127349 134127349 G A AKR1B1 3'UTR 0.09 TCGA-4R-AA8I-01 7 134931258 134931258 C T STRA8 Missense_Mutation p.A179V 0.36 deleterious(0.02) possibly_damaging(0.804) TCGA-4R-AA8I-01 7 14028330 14028330 A G ETV1 Intron 0.52 TCGA-4R-AA8I-01 7 142965961 142965961 A - GSTK1 3'UTR 0.27 TCGA-4R-AA8I-01 7 143055943 143055943 T C FAM131B Missense_Mutation p.E148G 0.17 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 7 143055964 143055964 T C FAM131B Missense_Mutation p.Y141C 0.18 deleterious(0) probably_damaging(0.991) TCGA-4R-AA8I-01 7 143175777 143175777 C T TAS2R41 Missense_Mutation p.A271V 0.38 tolerated(1) benign(0.006) TCGA-4R-AA8I-01 7 149502586 149502586 G A SSPO RNA 0.25 TCGA-4R-AA8I-01 7 150648807 150648807 C T KCNH2 Silent p.A558A 0.38 TCGA-4R-AA8I-01 7 150772569 150772569 C T SLC4A2 Missense_Mutation p.T1092M 0.56 deleterious(0) probably_damaging(1) TCGA-4R-AA8I-01 7 150776623 150776623 T C FASTK Missense_Mutation p.T157A 0.40 deleterious(0.01) probably_damaging(0.986) TCGA-4R-AA8I-01 7 150938679 150938679 G A SMARCD3 Missense_Mutation p.R280C 0.46 deleterious(0) probably_damaging(0.998) TCGA-4R-AA8I-01 7 151188049 151188049 T C RHEB Missense_Mutation p.Y35C 0.04 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 7 1518116 1518116 C T INTS1 Missense_Mutation p.E1506K 0.53 deleterious_low_confidence(0) benign(0.421) TCGA-4R-AA8I-01 7 152551777 152551777 C T ACTR3B 3'UTR 0.23 TCGA-4R-AA8I-01 7 156521354 156521354 A C LMBR1 Missense_Mutation p.L300R 0.33 deleterious(0.02) probably_damaging(0.912) TCGA-4R-AA8I-01 7 157178449 157178449 G A DNAJB6 Intron 0.13 TCGA-4R-AA8I-01 7 20671699 20671699 A G ABCB5 Missense_Mutation p.T93A 0.05 tolerated(0.14) benign(0.062) TCGA-4R-AA8I-01 7 32612909 32612909 C T AVL9 Silent p.H483H 0.57 TCGA-4R-AA8I-01 7 35913370 35913370 C A SEPT7 Missense_Mutation p.A167D 0.36 tolerated(0.08) possibly_damaging(0.891) TCGA-4R-AA8I-01 7 36396417 36396417 A T KIAA0895 Intron 0.51 TCGA-4R-AA8I-01 7 39736429 39736429 T A RALA Missense_Mutation p.S157T 0.03 deleterious(0.02) probably_damaging(0.993) TCGA-4R-AA8I-01 7 43485108 43485108 C T HECW1 Silent p.H779H 0.03 TCGA-4R-AA8I-01 7 43664380 43664380 C T STK17A Missense_Mutation p.S395F 0.33 deleterious(0) possibly_damaging(0.786) TCGA-4R-AA8I-01 7 45632443 45632443 C T ADCY1 Missense_Mutation p.A242V 0.50 tolerated(0.08) benign(0.03) TCGA-4R-AA8I-01 7 45743231 45743231 C T ADCY1 Silent p.G868G 0.33 TCGA-4R-AA8I-01 7 45797666 45797666 T C SEPT7P2 RNA 0.41 TCGA-4R-AA8I-01 7 4825084 4825084 G C AP5Z1 Splice_Site p.X323_splice 0.26 TCGA-4R-AA8I-01 7 50467747 50467747 C T IKZF1 Missense_Mutation p.R286C 0.40 deleterious(0) probably_damaging(0.994) TCGA-4R-AA8I-01 7 51095511 51095511 T - COBL Frame_Shift_Del p.K1094Nfs*20 0.25 TCGA-4R-AA8I-01 7 53103947 53103947 C T POM121L12 Missense_Mutation p.P195S 0.38 deleterious(0.02) probably_damaging(0.932) TCGA-4R-AA8I-01 7 6054890 6054890 A C AIMP2 Silent p.P83P 0.31 TCGA-4R-AA8I-01 7 618965 618965 G T PRKAR1B Silent p.P273P 0.30 TCGA-4R-AA8I-01 7 6204521 6204521 C T CYTH3 3'UTR 0.48 TCGA-4R-AA8I-01 7 65426023 65426023 T - GUSB Frame_Shift_Del p.K606Rfs*34 0.25 TCGA-4R-AA8I-01 7 65440028 65440028 G T GUSB Missense_Mutation p.P315T 0.09 tolerated(0.61) benign(0.006) TCGA-4R-AA8I-01 7 69064574 69064574 T C AUTS2 5'UTR 0.46 TCGA-4R-AA8I-01 7 70254962 70254962 C T AUTS2 Silent p.D920D 0.39 TCGA-4R-AA8I-01 7 72159738 72159738 C T MIR4650-2 5'Flank 0.49 TCGA-4R-AA8I-01 7 72658529 72658529 A T GTF2IRD2P1 RNA 0.44 TCGA-4R-AA8I-01 7 76131756 76131756 T C DTX2 Missense_Mutation p.Y458H 0.38 deleterious(0.01) probably_damaging(1) TCGA-4R-AA8I-01 7 76140138 76140139 - C UPK3B Frame_Shift_Ins p.L59Pfs*88 0.23 TCGA-4R-AA8I-01 7 81381292 81381292 A G HGF Intron 0.40 TCGA-4R-AA8I-01 7 8153369 8153369 C T ICA1 3'UTR 0.53 TCGA-4R-AA8I-01 7 81579773 81579773 A G CACNA2D1 Missense_Mutation p.Y1071H 0.33 tolerated(0.54) benign(0.003) TCGA-4R-AA8I-01 7 81600100 81600100 A - CACNA2D1 Intron 0.26 TCGA-4R-AA8I-01 7 86811354 86811354 T - DMTF1 Intron 0.64 TCGA-4R-AA8I-01 7 88963555 88963555 T C ZNF804B Missense_Mutation p.V420A 0.04 tolerated(0.15) benign(0.015) TCGA-4R-AA8I-01 7 92970851 92970851 A G CCDC132 Missense_Mutation p.Y724C 0.05 tolerated(0.14) probably_damaging(0.979) TCGA-4R-AA8I-01 7 97833453 97833453 A T LMTK2 Missense_Mutation p.S1480C 0.23 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 7 97946608 97946608 G T BAIAP2L1 Missense_Mutation p.Q137K 0.32 tolerated(0.08) benign(0.034) TCGA-4R-AA8I-01 7 98771194 98771194 G A KPNA7 3'Flank 0.41 TCGA-4R-AA8I-01 7 99706132 99706132 C T TAF6 Missense_Mutation p.R476H 0.42 tolerated(0.12) possibly_damaging(0.855) TCGA-4R-AA8I-01 7 99720163 99720163 T C CNPY4 Missense_Mutation p.V102A 0.48 deleterious(0) possibly_damaging(0.876) TCGA-4R-AA8I-01 7 99769524 99769525 - G GPC2 Frame_Shift_Ins p.D350Rfs*148 0.31 TCGA-4R-AA8I-01 8 104394725 104394725 A T CTHRC1 Missense_Mutation p.D210V 0.39 deleterious(0.01) probably_damaging(0.983) TCGA-4R-AA8I-01 8 104427455 104427455 A G DCAF13 Silent p.G79G 0.43 TCGA-4R-AA8I-01 8 104447934 104447934 A G DCAF13 Missense_Mutation p.D441G 0.39 deleterious(0.02) possibly_damaging(0.525) TCGA-4R-AA8I-01 8 113421251 113421251 G T CSMD3 Silent p.G1802G 0.38 TCGA-4R-AA8I-01 8 11995932 11995932 T C USP17L2 Missense_Mutation p.H113R 0.07 deleterious(0.01) possibly_damaging(0.766) TCGA-4R-AA8I-01 8 124340665 124340665 A T ATAD2 Missense_Mutation p.D1211E 0.41 tolerated(0.21) benign(0.003) TCGA-4R-AA8I-01 8 124383532 124383532 G A ATAD2 Missense_Mutation p.R195C 0.36 deleterious(0.01) benign(0.187) TCGA-4R-AA8I-01 8 12879351 12879351 A G KIAA1456 Missense_Mutation p.N388S 0.31 tolerated(0.78) benign(0.039) TCGA-4R-AA8I-01 8 131172160 131172160 A T ASAP1 Missense_Mutation p.N320K 0.44 deleterious(0) probably_damaging(0.932) TCGA-4R-AA8I-01 8 133764034 133764034 A C TMEM71 Missense_Mutation p.V104G 0.33 deleterious(0) probably_damaging(0.997) TCGA-4R-AA8I-01 8 133848922 133848922 C T PHF20L1 Nonsense_Mutation p.R683* 0.34 TCGA-4R-AA8I-01 8 13424486 13424486 G A C8orf48 5'UTR 0.09 TCGA-4R-AA8I-01 8 139601305 139601305 A G COL22A1 3'UTR 0.21 TCGA-4R-AA8I-01 8 141381151 141381151 C T TRAPPC9 Silent p.A519A 0.35 TCGA-4R-AA8I-01 8 143857040 143857040 A G LYNX1 Missense_Mutation p.M42T 0.39 deleterious(0.01) benign(0.036) TCGA-4R-AA8I-01 8 144809309 144809309 C T FAM83H Silent p.A774A 0.27 TCGA-4R-AA8I-01 8 144812634 144812634 G A FAM83H Missense_Mutation p.S40L 0.42 tolerated(0.41) benign(0.036) TCGA-4R-AA8I-01 8 144942558 144942558 T A EPPK1 Nonsense_Mutation p.K1622* 0.18 TCGA-4R-AA8I-01 8 145095689 145095689 C T SPATC1 Silent p.S329S 0.34 TCGA-4R-AA8I-01 8 145649444 145649444 G A VPS28 Silent p.G176G 0.44 TCGA-4R-AA8I-01 8 145700399 145700399 A G FOXH1 Missense_Mutation p.F107S 0.42 deleterious(0) probably_damaging(0.941) TCGA-4R-AA8I-01 8 145746113 145746113 G A LRRC14 Missense_Mutation p.R274H 0.50 tolerated(0.13) benign(0.118) TCGA-4R-AA8I-01 8 145746554 145746554 T C LRRC14 Missense_Mutation p.C392R 0.30 deleterious(0) possibly_damaging(0.908) TCGA-4R-AA8I-01 8 145750253 145750253 A G LRRC24 Missense_Mutation p.C36R 0.30 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 8 145752948 145752948 C T C8orf82 Silent p.A143A 0.88 TCGA-4R-AA8I-01 8 146029091 146029091 C T ZNF517 Silent p.P33P 0.39 TCGA-4R-AA8I-01 8 146033090 146033090 C T ZNF517 Silent p.C263C 0.40 TCGA-4R-AA8I-01 8 146203006 146203006 T C ZNF252P RNA 0.44 TCGA-4R-AA8I-01 8 15621757 15621757 T C TUSC3 3'UTR 0.39 TCGA-4R-AA8I-01 8 1719730 1719730 G A CLN8 Silent p.T170T 0.11 TCGA-4R-AA8I-01 8 1842674 1842674 C T ARHGEF10 Missense_Mutation p.A459V 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-4R-AA8I-01 8 24193345 24193345 C T ADAM28 Intron 0.52 TCGA-4R-AA8I-01 8 24772485 24772485 T C NEFM Intron 0.59 TCGA-4R-AA8I-01 8 25287197 25287197 A - KCTD9 3'UTR 0.28 TCGA-4R-AA8I-01 8 26223877 26223877 A G PPP2R2A Missense_Mutation p.D350G 0.32 deleterious(0.01) benign(0.265) TCGA-4R-AA8I-01 8 27516318 27516318 C A SCARA3 Missense_Mutation p.Q211K 0.04 tolerated(0.14) benign(0.374) TCGA-4R-AA8I-01 8 27646450 27646450 G A ESCO2 Silent p.Q406Q 0.37 TCGA-4R-AA8I-01 8 27667883 27667883 T A PBK Missense_Mutation p.E303V 0.48 tolerated(0.05) probably_damaging(0.968) TCGA-4R-AA8I-01 8 28608212 28608212 T C EXTL3 Silent p.P863P 0.42 TCGA-4R-AA8I-01 8 29924389 29924389 G A TMEM66 Missense_Mutation p.A249V 0.10 tolerated(0.34) probably_damaging(0.998) TCGA-4R-AA8I-01 8 35541099 35541099 C A UNC5D Missense_Mutation p.S202Y 0.42 deleterious(0.02) benign(0.056) TCGA-4R-AA8I-01 8 363195 363195 G A FBXO25 Missense_Mutation p.C39Y 0.27 tolerated(1) benign(0.002) TCGA-4R-AA8I-01 8 38184373 38184373 C T WHSC1L1 Missense_Mutation p.G528E 0.40 tolerated(0.3) benign(0.019) TCGA-4R-AA8I-01 8 41387738 41387738 A G GINS4 Missense_Mutation p.D6G 0.18 deleterious_low_confidence(0.04) benign(0.001) TCGA-4R-AA8I-01 8 52232315 52232315 T C PXDNL 3'UTR 0.34 TCGA-4R-AA8I-01 8 53555118 53555118 C T RB1CC1 Missense_Mutation p.R1377H 0.30 deleterious(0.05) probably_damaging(0.992) TCGA-4R-AA8I-01 8 59058737 59058737 C T FAM110B 5'UTR 0.45 TCGA-4R-AA8I-01 8 59511898 59511898 C T NSMAF Missense_Mutation p.S524N 0.42 tolerated(0.34) benign(0.007) TCGA-4R-AA8I-01 8 6590108 6590108 T C AGPAT5 Silent p.S144S 0.06 TCGA-4R-AA8I-01 8 66651737 66651737 C A PDE7A Missense_Mutation p.V199F 0.39 tolerated(0.08) probably_damaging(0.998) TCGA-4R-AA8I-01 8 68658523 68658523 G A CPA6 5'UTR 0.29 TCGA-4R-AA8I-01 8 69020402 69020402 T A PREX2 Missense_Mutation p.I925N 0.35 deleterious(0.03) benign(0.219) TCGA-4R-AA8I-01 8 69445496 69445496 A G C8orf34 Intron 0.44 TCGA-4R-AA8I-01 8 71593234 71593234 T - XKR9 5'UTR 0.26 TCGA-4R-AA8I-01 8 77776151 77776151 T C ZFHX4 Missense_Mutation p.Y3401H 0.43 benign(0.12) TCGA-4R-AA8I-01 8 87076416 87076416 G A PSKH2 Silent p.S210S 0.39 TCGA-4R-AA8I-01 8 88884172 88884173 - T DCAF4L2 3'UTR 0.32 TCGA-4R-AA8I-01 8 90965666 90965666 T - NBN Frame_Shift_Del p.R551Gfs*8 0.30 TCGA-4R-AA8I-01 8 92352747 92352747 A - SLC26A7 Frame_Shift_Del p.K333Nfs*20 0.28 TCGA-4R-AA8I-01 8 95680213 95680213 A G ESRP1 Missense_Mutation p.E323G 0.37 tolerated(0.42) possibly_damaging(0.613) TCGA-4R-AA8I-01 9 100617015 100617015 C - FOXE1 Frame_Shift_Del p.S275Pfs*92 0.17 TCGA-4R-AA8I-01 9 100843305 100843305 C T NANS Missense_Mutation p.R271C 0.06 tolerated(0.05) possibly_damaging(0.67) TCGA-4R-AA8I-01 9 101748016 101748016 C A COL15A1 Missense_Mutation p.D90E 0.07 deleterious(0) probably_damaging(0.968) TCGA-4R-AA8I-01 9 103054739 103054739 C T INVS Missense_Mutation p.R734W 0.40 deleterious_low_confidence(0.03) possibly_damaging(0.462) TCGA-4R-AA8I-01 9 104079724 104079724 A G LPPR1 Silent p.V297V 0.40 TCGA-4R-AA8I-01 9 104323458 104323458 C T RNF20 Silent p.I865I 0.03 TCGA-4R-AA8I-01 9 104340102 104340102 A T GRIN3A Missense_Mutation p.S986T 0.26 tolerated(0.76) benign(0.065) TCGA-4R-AA8I-01 9 112211195 112211195 A G PTPN3 Intron 0.41 TCGA-4R-AA8I-01 9 113341925 113341925 C T SVEP1 5'UTR 0.31 TCGA-4R-AA8I-01 9 114176260 114176260 G A KIAA0368 Missense_Mutation p.P843L 0.25 tolerated(0.25) benign(0.065) TCGA-4R-AA8I-01 9 115648748 115648748 A T SLC46A2 Silent p.I454I 0.36 TCGA-4R-AA8I-01 9 116153902 116153902 A G ALAD Missense_Mutation p.Y56H 0.42 tolerated(0.06) benign(0.404) TCGA-4R-AA8I-01 9 119130003 119130003 C - PAPPA Frame_Shift_Del p.H1527Tfs*3 0.13 TCGA-4R-AA8I-01 9 123171595 123171595 C A CDK5RAP2 Splice_Site p.X1472_splice 0.33 TCGA-4R-AA8I-01 9 123533666 123533666 C T FBXW2 Missense_Mutation p.G346S 0.34 deleterious(0.03) probably_damaging(0.998) TCGA-4R-AA8I-01 9 124534910 124534910 G A DAB2IP Silent p.P673P 0.33 TCGA-4R-AA8I-01 9 125582601 125582601 G A PDCL Silent p.G223G 0.26 TCGA-4R-AA8I-01 9 128728299 128728299 G A PBX3 3'UTR 0.51 TCGA-4R-AA8I-01 9 129854031 129854031 G A ANGPTL2 Silent p.Y400Y 0.32 TCGA-4R-AA8I-01 9 130027161 130027161 T C GARNL3 Missense_Mutation p.V2A 0.41 deleterious_low_confidence(0) benign(0.005) TCGA-4R-AA8I-01 9 130551527 130551527 T C CDK9 Missense_Mutation p.V275A 0.41 deleterious(0) probably_damaging(0.994) TCGA-4R-AA8I-01 9 130829075 130829075 G A NAIF1 Silent p.D102D 0.41 TCGA-4R-AA8I-01 9 130885323 130885323 C T PTGES2 Silent p.A259A 0.25 TCGA-4R-AA8I-01 9 13192209 13192209 C T MPDZ Missense_Mutation p.C630Y 0.35 deleterious(0) probably_damaging(0.997) TCGA-4R-AA8I-01 9 132637022 132637022 C T USP20 Silent p.H636H 0.43 TCGA-4R-AA8I-01 9 134353960 134353960 G A PRRC2B Missense_Mutation p.R1571H 0.48 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 9 135140223 135140223 T C SETX Missense_Mutation p.I2479M 0.48 tolerated(0.17) benign(0.364) TCGA-4R-AA8I-01 9 135554338 135554338 C T GTF3C4 Silent p.D444D 0.36 TCGA-4R-AA8I-01 9 135946790 135946790 C - CEL Frame_Shift_Del p.V640Cfs*67 0.40 TCGA-4R-AA8I-01 9 136330530 136330530 A T CACFD1 Missense_Mutation p.D94V 0.42 deleterious(0) probably_damaging(0.964) TCGA-4R-AA8I-01 9 138391839 138391839 G T C9orf116 5'Flank 0.36 TCGA-4R-AA8I-01 9 139231495 139231495 C T GPSM1 Nonsense_Mutation p.R182* 0.33 TCGA-4R-AA8I-01 9 139288750 139288750 A G SNAPC4 Missense_Mutation p.S195P 0.39 deleterious(0) possibly_damaging(0.665) TCGA-4R-AA8I-01 9 139564144 139564144 C T EGFL7 Missense_Mutation p.T95I 0.05 tolerated(0.13) probably_damaging(0.954) TCGA-4R-AA8I-01 9 139739564 139739564 T C C9orf172 Missense_Mutation p.M233T 0.29 tolerated(0.19) benign(0.017) TCGA-4R-AA8I-01 9 140174688 140174688 C - TOR4A 3'UTR 0.31 TCGA-4R-AA8I-01 9 140477533 140477533 G A ZMYND19 Missense_Mutation p.R148W 0.19 deleterious(0.02) possibly_damaging(0.635) TCGA-4R-AA8I-01 9 140881287 140881287 C A CACNA1B Missense_Mutation p.A652D 0.32 deleterious(0) possibly_damaging(0.591) TCGA-4R-AA8I-01 9 140904524 140904524 A G CACNA1B Missense_Mutation p.T719A 0.16 deleterious(0) benign(0.002) TCGA-4R-AA8I-01 9 15471197 15471198 - T PSIP1 Intron 0.23 TCGA-4R-AA8I-01 9 19296164 19296164 T - DENND4C Frame_Shift_Del p.F322Lfs*55 0.23 TCGA-4R-AA8I-01 9 2047346 2047346 C A SMARCA2 Missense_Mutation p.P303H 0.05 possibly_damaging(0.893) TCGA-4R-AA8I-01 9 21077155 21077155 A - IFNB1 3'UTR 0.23 TCGA-4R-AA8I-01 9 21206293 21206293 A G IFNA10 3'UTR 0.25 TCGA-4R-AA8I-01 9 32450103 32450103 C G ACO1 Silent p.A888A 0.47 TCGA-4R-AA8I-01 9 35044854 35044854 G A C9orf131 Missense_Mutation p.R743H 0.39 tolerated(0.05) benign(0.001) TCGA-4R-AA8I-01 9 35399263 35399263 C A UNC13B Silent p.P1311P 0.37 TCGA-4R-AA8I-01 9 35558293 35558293 G A RUSC2 Missense_Mutation p.A1054T 0.21 tolerated(0.07) possibly_damaging(0.672) TCGA-4R-AA8I-01 9 35618374 35618374 C T CD72 5'UTR 0.43 TCGA-4R-AA8I-01 9 35674060 35674060 T G CA9 Missense_Mutation p.V35G 0.36 deleterious_low_confidence(0.04) unknown(0) TCGA-4R-AA8I-01 9 35705588 35705588 G A TLN1 Missense_Mutation p.S1898L 0.47 tolerated(0.3) benign(0.016) TCGA-4R-AA8I-01 9 37707440 37707440 C T FRMPD1 Silent p.P43P 0.45 TCGA-4R-AA8I-01 9 37888305 37888305 A T SLC25A51 Nonsense_Mutation p.Y81* 0.31 TCGA-4R-AA8I-01 9 4118184 4118184 G A GLIS3 Missense_Mutation p.R432C 0.37 tolerated(0.22) probably_damaging(0.997) TCGA-4R-AA8I-01 9 43629299 43629299 T A SPATA31A6 Missense_Mutation p.R71W 0.12 deleterious(0) probably_damaging(0.993) TCGA-4R-AA8I-01 9 4666339 4666339 A G SPATA6L Intron 0.44 TCGA-4R-AA8I-01 9 5772941 5772941 G A KIAA1432 Missense_Mutation p.V1282I 0.40 tolerated(0.73) benign(0.002) TCGA-4R-AA8I-01 9 72435841 72435841 C T C9orf135 Nonsense_Mutation p.Q16* 0.29 TCGA-4R-AA8I-01 9 75567885 75567885 A T ALDH1A1 Missense_Mutation p.V11D 0.36 tolerated(0.52) benign(0.027) TCGA-4R-AA8I-01 9 79836219 79836219 A - VPS13A Frame_Shift_Del p.K372Sfs*2 0.39 TCGA-4R-AA8I-01 9 82333837 82333837 A T TLE4 Missense_Mutation p.D514V 0.43 deleterious(0) probably_damaging(0.977) TCGA-4R-AA8I-01 9 84531495 84531495 T - SPATA31D5P RNA 0.29 TCGA-4R-AA8I-01 9 84607569 84607569 T A SPATA31D1 Silent p.I728I 0.40 TCGA-4R-AA8I-01 9 8521421 8521421 C - PTPRD Frame_Shift_Del p.A273Qfs*4 0.30 TCGA-4R-AA8I-01 9 86495341 86495341 A G KIF27 Silent p.A838A 0.46 TCGA-4R-AA8I-01 9 88161842 88161842 A G AGTPBP1 3'UTR 0.44 TCGA-4R-AA8I-01 9 91150438 91150438 C T NXNL2 Missense_Mutation p.A30V 0.41 deleterious(0.01) possibly_damaging(0.86) TCGA-4R-AA8I-01 9 91617238 91617238 A T S1PR3 Missense_Mutation p.I375F 0.39 tolerated_low_confidence(0.17) benign(0.05) TCGA-4R-AA8I-01 9 94456665 94456665 G A ROR2 Silent p.C698C 0.13 TCGA-4R-AA8I-01 9 95021242 95021242 T C IARS Missense_Mutation p.N637S 0.42 tolerated(0.31) benign(0.304) TCGA-4R-AA8I-01 9 95077626 95077626 T C NOL8 Silent p.L427L 0.47 TCGA-4R-AA8I-01 9 95263292 95263292 C T ECM2 Missense_Mutation p.V550I 0.34 deleterious(0.03) possibly_damaging(0.825) TCGA-4R-AA8I-01 9 96392278 96392278 C T PHF2 Missense_Mutation p.A42V 0.29 deleterious(0) unknown(0) TCGA-4R-AA8I-01 9 99521523 99521523 T G ZNF510 Missense_Mutation p.N530T 0.06 tolerated(0.51) benign(0.309) TCGA-4R-AA8I-01 9 99580289 99580289 T C ZNF782 Silent p.K672K 0.06 TCGA-4R-AA8I-01 X 108691376 108691376 G A GUCY2F Silent p.I497I 0.87 TCGA-4R-AA8I-01 X 108779154 108779154 G T NXT2 Nonsense_Mutation p.G15* 0.08 TCGA-4R-AA8I-01 X 112033910 112033910 G T AMOT Missense_Mutation p.A676D 0.75 unknown(0) TCGA-4R-AA8I-01 X 117106826 117106826 C T KLHL13 Intron 0.18 TCGA-4R-AA8I-01 X 129185838 129185838 A G BCORL1 Missense_Mutation p.E1567G 0.89 benign(0.001) TCGA-4R-AA8I-01 X 1314965 1314965 A G CRLF2 Silent p.F232F 0.45 TCGA-4R-AA8I-01 X 134481753 134481753 T - ZNF449 Intron 0.44 TCGA-4R-AA8I-01 X 136112908 136112909 CT - GPR101 Frame_Shift_Del p.S309Qfs*12 0.48 TCGA-4R-AA8I-01 X 1424529 1424529 G A CSF2RA Intron 0.43 TCGA-4R-AA8I-01 X 148607575 148607575 T C IDS Intron 0.67 TCGA-4R-AA8I-01 X 152158844 152158844 G A PNMA5 Silent p.N433N 0.75 TCGA-4R-AA8I-01 X 153030933 153030933 C - PLXNB3 5'UTR 0.41 TCGA-4R-AA8I-01 X 153138119 153138119 G A L1CAM Missense_Mutation p.P42L 0.71 deleterious(0) possibly_damaging(0.903) TCGA-4R-AA8I-01 X 153296806 153296806 G A MECP2 Missense_Mutation p.T170M 0.86 deleterious(0) probably_damaging(0.999) TCGA-4R-AA8I-01 X 153599342 153599342 C T FLNA Missense_Mutation p.R91H 0.05 deleterious(0) benign(0.323) TCGA-4R-AA8I-01 X 155004148 155004148 C T SPRY3 Silent p.N205N 0.37 TCGA-4R-AA8I-01 X 155171879 155171879 G A VAMP7 3'UTR 0.06 TCGA-4R-AA8I-01 X 155239860 155239860 G T IL9R Missense_Mutation p.G451V 0.08 tolerated(0.18) benign(0.26) TCGA-4R-AA8I-01 X 209880 209880 G A PLCXD1 Missense_Mutation p.R243H 0.21 deleterious(0.05) benign(0.444) TCGA-4R-AA8I-01 X 21958894 21958894 A C SMS 5'UTR 0.81 TCGA-4R-AA8I-01 X 27765564 27765564 A G DCAF8L2 Silent p.R184R 0.80 TCGA-4R-AA8I-01 X 31496268 31496268 G A DMD Silent p.G2964G 0.72 TCGA-4R-AA8I-01 X 39930223 39930223 T A BCOR Intron 0.81 TCGA-4R-AA8I-01 X 44833931 44833931 T C KDM6A Missense_Mutation p.Y119H 0.73 deleterious(0.02) probably_damaging(0.961) TCGA-4R-AA8I-01 X 47486673 47486673 A G CFP Silent p.G211G 0.04 TCGA-4R-AA8I-01 X 49021270 49021270 C T MAGIX Missense_Mutation p.P117S 0.85 tolerated(0.39) benign(0.01) TCGA-4R-AA8I-01 X 49127168 49127168 G A PPP1R3F Missense_Mutation p.R279H 0.80 deleterious(0.01) probably_damaging(1) TCGA-4R-AA8I-01 X 54321142 54321142 A T WNK3 Missense_Mutation p.S513T 0.93 tolerated(0.29) benign(0.004) TCGA-4R-AA8I-01 X 73959153 73959153 C T KIAA2022 3'UTR 0.57 TCGA-4R-AA8I-01 X 73963111 73963111 G A KIAA2022 Silent p.G427G 0.84 TCGA-4R-AA8I-01 X 76920179 76920179 T C ATRX Missense_Mutation p.K1300E 0.74 probably_damaging(0.995) TCGA-4R-AA8I-01 X 76937770 76937770 T - ATRX Frame_Shift_Del p.K993Rfs*10 0.40 TCGA-4R-AA8I-01 X 7811603 7811603 C T VCX Missense_Mutation p.A56V 0.17 deleterious(0.03) unknown(0) TCGA-4R-AA8I-01 X 79965042 79965042 C T BRWD3 Missense_Mutation p.R787H 0.73 deleterious(0.03) benign(0.009) TCGA-4R-AA8I-01 X 86877225 86877225 G T KLHL4 Missense_Mutation p.E313D 0.69 tolerated(0.16) benign(0.028) TCGA-4R-AA8I-01 X 91873881 91873881 G A PCDH11X Missense_Mutation p.R1329H 0.11 deleterious_low_confidence(0) benign(0.326) TCGA-4R-AA8I-01 X 9866241 9866241 C T SHROOM2 Silent p.V934V 0.56 TCGA-4R-AA8I-01 Y 15026814 15026814 C T DDX3Y Missense_Mutation p.R260C 0.81 deleterious(0.03) possibly_damaging(0.838) TCGA-4R-AA8I-01 Y 16942179 16942179 G A NLGN4Y Missense_Mutation p.A461T 0.83 tolerated(0.08) probably_damaging(0.994) TCGA-4R-AA8I-01 Y 5369160 5369160 A T PCDH11Y Silent p.G1064G 0.76 TCGA-5C-A9VG-01 10 102013179 102013179 G A CWF19L1 Nonsense_Mutation p.R208* 0.16 TCGA-5C-A9VG-01 10 102747227 102747227 T G MRPL43 5'UTR 0.10 TCGA-5C-A9VG-01 10 105037736 105037736 G T INA Silent p.V256V 0.16 TCGA-5C-A9VG-01 10 113915955 113915955 C T GPAM Intron 0.21 TCGA-5C-A9VG-01 10 126205791 126205791 G T LHPP Missense_Mutation p.A223S 0.20 tolerated(0.06) probably_damaging(0.98) TCGA-5C-A9VG-01 10 16941072 16941072 T C CUBN Missense_Mutation p.K2841E 0.17 tolerated(0.07) possibly_damaging(0.515) TCGA-5C-A9VG-01 10 62149211 62149211 C T ANK3 Missense_Mutation p.R29H 0.06 possibly_damaging(0.744) TCGA-5C-A9VG-01 10 75528787 75528787 T C SEC24C Silent p.F767F 0.22 TCGA-5C-A9VG-01 10 82297983 82297983 C G SH2D4B 5'UTR 0.26 TCGA-5C-A9VG-01 10 90356037 90356037 G A LIPJ Missense_Mutation p.G147D 0.10 deleterious(0.02) possibly_damaging(0.79) TCGA-5C-A9VG-01 10 95134586 95134586 T A MYOF Silent p.T745T 0.30 TCGA-5C-A9VG-01 11 1024067 1024067 C T MUC6 Missense_Mutation p.D1088N 0.09 unknown(0) TCGA-5C-A9VG-01 11 113803709 113803709 A G HTR3B Missense_Mutation p.D197G 0.33 deleterious(0) possibly_damaging(0.874) TCGA-5C-A9VG-01 11 114262309 114262309 A G C11orf71 Missense_Mutation p.I141T 0.36 tolerated_low_confidence(1) benign(0) TCGA-5C-A9VG-01 11 124756912 124756912 G A ROBO4 Missense_Mutation p.A799V 0.24 deleterious(0.01) possibly_damaging(0.483) TCGA-5C-A9VG-01 11 34121000 34121000 G T CAPRIN1 3'UTR 0.07 TCGA-5C-A9VG-01 11 34192494 34192494 C T ABTB2 Missense_Mutation p.E508K 0.14 tolerated(0.34) benign(0.038) TCGA-5C-A9VG-01 11 4936102 4936102 A G OR51G2 Silent p.S264S 0.22 TCGA-5C-A9VG-01 11 56344374 56344374 G A OR5M10 Missense_Mutation p.A275V 0.20 deleterious(0.02) probably_damaging(0.938) TCGA-5C-A9VG-01 11 61914264 61914264 C G INCENP Silent p.R698R 0.18 TCGA-5C-A9VG-01 11 6239274 6239275 AG - FAM160A2 Frame_Shift_Del p.S528* 0.17 TCGA-5C-A9VG-01 11 63273832 63273832 T G LGALS12 5'Flank 0.50 TCGA-5C-A9VG-01 11 68029219 68029219 G C C11orf24 Missense_Mutation p.T415R 0.13 deleterious(0) probably_damaging(0.934) TCGA-5C-A9VG-01 11 77060308 77060308 T A PAK1 Silent p.A287A 0.22 TCGA-5C-A9VG-01 11 78387340 78387340 G C TENM4 Missense_Mutation p.H1785D 0.14 deleterious(0) probably_damaging(0.986) TCGA-5C-A9VG-01 11 819708 819708 C T PNPLA2 5'UTR 0.16 TCGA-5C-A9VG-01 11 92533209 92533209 G A FAT3 Missense_Mutation p.G2344S 0.04 probably_damaging(1) TCGA-5C-A9VG-01 12 108013779 108013779 G A BTBD11 Silent p.L823L 0.10 TCGA-5C-A9VG-01 12 110874389 110874389 C T ARPC3 Missense_Mutation p.A118T 0.12 tolerated(0.41) benign(0.005) TCGA-5C-A9VG-01 12 117768807 117768807 C T NOS1 Missense_Mutation p.R23H 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-5C-A9VG-01 12 119957988 119957988 T C CCDC60 Missense_Mutation p.L344P 0.17 tolerated(0.21) benign(0.145) TCGA-5C-A9VG-01 12 122710667 122710667 C - DIABLO 5'UTR 0.31 TCGA-5C-A9VG-01 12 53185541 53185541 G A KRT3 Silent p.S416S 0.09 TCGA-5C-A9VG-01 12 53585410 53585410 G A ITGB7 Missense_Mutation p.P776L 0.17 deleterious(0) probably_damaging(1) TCGA-5C-A9VG-01 12 56510528 56510528 C G RPL41 5'UTR 0.25 TCGA-5C-A9VG-01 12 62902146 62902146 A G MON2 Silent p.R290R 0.04 TCGA-5C-A9VG-01 12 6933599 6933599 T G GPR162 Missense_Mutation p.F179V 0.18 deleterious(0) probably_damaging(0.961) TCGA-5C-A9VG-01 12 6933713 6933713 C T GPR162 Missense_Mutation p.R217W 0.30 tolerated(0.17) possibly_damaging(0.89) TCGA-5C-A9VG-01 12 81101722 81101722 G A MYF6 Missense_Mutation p.G75D 0.26 deleterious(0) probably_damaging(1) TCGA-5C-A9VG-01 13 25671865 25671865 C T PABPC3 Missense_Mutation p.A510V 0.17 tolerated(0.08) benign(0.004) TCGA-5C-A9VG-01 13 41240224 41240224 C G FOXO1 Silent p.P42P 0.50 TCGA-5C-A9VG-01 13 53603061 53603061 C A OLFM4 Silent p.P30P 0.18 TCGA-5C-A9VG-01 13 78211328 78211328 A T SCEL Missense_Mutation p.R613W 0.17 deleterious(0.01) probably_damaging(0.937) TCGA-5C-A9VG-01 14 102028627 102028627 A C DIO3 Missense_Mutation p.Q265P 0.15 deleterious(0) probably_damaging(0.986) TCGA-5C-A9VG-01 14 20443866 20443866 G C OR4K15 Silent p.L63L 0.20 TCGA-5C-A9VG-01 14 21058715 21058715 C T RNASE12 Silent p.R56R 0.17 TCGA-5C-A9VG-01 14 23467696 23467696 C T C14orf93 Silent p.R179R 0.17 TCGA-5C-A9VG-01 14 42356164 42356164 T G LRFN5 Silent p.T112T 0.17 TCGA-5C-A9VG-01 14 76957890 76957890 C T ESRRB Silent p.D296D 0.17 TCGA-5C-A9VG-01 14 77723177 77723177 G A TMEM63C 3'UTR 0.15 TCGA-5C-A9VG-01 15 25939994 25939994 G T ATP10A Missense_Mutation p.S1020R 0.08 tolerated(0.18) benign(0.003) TCGA-5C-A9VG-01 15 33954906 33954906 G T RYR3 Silent p.V1725V 0.16 TCGA-5C-A9VG-01 15 37242602 37242602 C T MEIS2 Splice_Site p.X301_splice 0.09 TCGA-5C-A9VG-01 15 41988636 41988636 C T MGA Silent p.V476V 0.18 TCGA-5C-A9VG-01 15 50226281 50226281 G T ATP8B4 Silent p.P462P 0.18 TCGA-5C-A9VG-01 15 52543594 52543594 G T MYO5C Missense_Mutation p.A552D 0.21 deleterious(0) probably_damaging(0.997) TCGA-5C-A9VG-01 15 65849185 65849185 C T PTPLAD1 Missense_Mutation p.P105S 0.17 deleterious(0.04) probably_damaging(1) TCGA-5C-A9VG-01 15 74836644 74836644 C T ARID3B Missense_Mutation p.H123Y 0.09 tolerated(0.24) possibly_damaging(0.736) TCGA-5C-A9VG-01 15 81046707 81046707 C G ABHD17C Missense_Mutation p.S329C 0.34 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-5C-A9VG-01 16 19056299 19056299 C T TMC7 Silent p.C477C 0.29 TCGA-5C-A9VG-01 16 24583041 24583041 A G RBBP6 Missense_Mutation p.K1552E 0.17 tolerated_low_confidence(0.06) unknown(0) TCGA-5C-A9VG-01 16 2764244 2764244 C T PRSS27 Silent p.V110V 0.21 TCGA-5C-A9VG-01 16 29858633 29858633 A C MVP Missense_Mutation p.K794T 0.11 deleterious(0) probably_damaging(0.987) TCGA-5C-A9VG-01 16 3296531 3296531 A G MEFV Missense_Mutation p.L535S 0.12 deleterious(0) probably_damaging(0.994) TCGA-5C-A9VG-01 16 541139 541139 A T RAB11FIP3 Intron 0.18 TCGA-5C-A9VG-01 16 613614 613614 C A C16orf11 Missense_Mutation p.P107H 0.12 tolerated(0.12) probably_damaging(0.914) TCGA-5C-A9VG-01 16 67920015 67920015 C A NRN1L Silent p.A117A 0.16 TCGA-5C-A9VG-01 16 705201 705201 G A WDR90 Intron 0.33 TCGA-5C-A9VG-01 16 84188219 84188219 G A DNAAF1 Silent p.G130G 0.36 TCGA-5C-A9VG-01 16 84522960 84522960 A C TLDC1 Silent p.T151T 0.19 TCGA-5C-A9VG-01 16 89347979 89347979 C T ANKRD11 Silent p.S1657S 0.10 TCGA-5C-A9VG-01 17 17207117 17207117 C T NT5M Missense_Mutation p.R85W 0.04 deleterious(0) possibly_damaging(0.712) TCGA-5C-A9VG-01 17 27901810 27901810 C A GIT1 Silent p.L741L 0.11 TCGA-5C-A9VG-01 17 38033171 38033171 C T ZPBP2 3'UTR 0.15 TCGA-5C-A9VG-01 17 40174526 40174543 GGCCGAACTGCCCCGACA - NKIRAS2 In_Frame_Del p.A69_H74del 0.14 TCGA-5C-A9VG-01 17 40925774 40925774 G T VPS25 Missense_Mutation p.R26L 0.16 deleterious(0.03) possibly_damaging(0.824) TCGA-5C-A9VG-01 17 48278919 48278919 T G COL1A1 5'UTR 0.21 TCGA-5C-A9VG-01 17 4927425 4927425 G C KIF1C Missense_Mutation p.K1097N 0.15 deleterious_low_confidence(0) benign(0.403) TCGA-5C-A9VG-01 17 5308564 5308564 C G NUP88 Splice_Site p.X286_splice 0.14 TCGA-5C-A9VG-01 17 64219853 64219853 C T APOH Silent p.E126E 0.18 TCGA-5C-A9VG-01 17 72851235 72851235 C T GRIN2C 5'UTR 0.21 TCGA-5C-A9VG-01 17 7359261 7359261 G C CHRNB1 Splice_Site p.X455_splice 0.08 TCGA-5C-A9VG-01 17 76567433 76567433 C T DNAH17 Missense_Mutation p.V254I 0.12 benign(0.006) TCGA-5C-A9VG-01 17 7942824 7942824 C T ALOX15B Missense_Mutation p.R90C 0.10 deleterious(0.01) probably_damaging(0.987) TCGA-5C-A9VG-01 17 79556001 79556011 CTGCTAGACTC - NPLOC4 Frame_Shift_Del p.E414* 0.10 TCGA-5C-A9VG-01 18 19024334 19024334 A G GREB1L Missense_Mutation p.M453V 0.20 tolerated(0.66) benign(0.019) TCGA-5C-A9VG-01 18 44682392 44682392 A C IER3IP1 3'UTR 0.14 TCGA-5C-A9VG-01 18 61264391 61264391 G A SERPINB13 Missense_Mutation p.G324R 0.15 tolerated(0.12) benign(0.034) TCGA-5C-A9VG-01 18 6263997 6263997 C G L3MBTL4 Missense_Mutation p.W56C 0.09 deleterious(0.02) benign(0.149) TCGA-5C-A9VG-01 19 10431330 10431330 C T RAVER1 Splice_Site p.X607_splice 0.10 TCGA-5C-A9VG-01 19 11797292 11797292 C A ZNF833P RNA 0.34 TCGA-5C-A9VG-01 19 13476260 13476260 T C CACNA1A Missense_Mutation p.I219V 0.20 benign(0.274) TCGA-5C-A9VG-01 19 16952599 16952599 G C SIN3B Silent p.G134G 0.13 TCGA-5C-A9VG-01 19 18306856 18306856 A C MPV17L2 Silent p.R204R 0.43 TCGA-5C-A9VG-01 19 3626733 3626733 G A CACTIN Missense_Mutation p.R10W 0.37 deleterious_low_confidence(0) unknown(0) TCGA-5C-A9VG-01 19 40200065 40200065 T C LGALS14 3'Flank 0.33 TCGA-5C-A9VG-01 19 40368475 40368475 G A FCGBP Silent p.F4291F 0.10 TCGA-5C-A9VG-01 19 41512811 41512811 G T CYP2B6 Silent p.G162G 0.15 TCGA-5C-A9VG-01 19 4793065 4793065 A G FEM1A Missense_Mutation p.Y400C 0.10 deleterious(0) probably_damaging(0.999) TCGA-5C-A9VG-01 19 49404072 49404072 C A NUCB1 Silent p.R7R 0.27 TCGA-5C-A9VG-01 19 53854546 53854546 G A ZNF845 Silent p.Q206Q 0.17 TCGA-5C-A9VG-01 19 5592867 5592867 G A SAFB2 Missense_Mutation p.R747C 0.14 deleterious(0) benign(0.217) TCGA-5C-A9VG-01 19 577930 577930 G A BSG Missense_Mutation p.R75Q 0.17 deleterious(0.01) benign(0.103) TCGA-5C-A9VG-01 19 58371671 58371671 C G ZNF587 3'UTR 0.11 TCGA-5C-A9VG-01 19 58721436 58721436 T G ZNF274 Silent p.P282P 0.16 TCGA-5C-A9VG-01 19 6746112 6746112 C A TRIP10 Intron 0.14 TCGA-5C-A9VG-01 19 8399396 8399396 C T KANK3 Missense_Mutation p.V439M 0.13 tolerated(0.17) benign(0.071) TCGA-5C-A9VG-01 1 117156546 117156546 C T IGSF3 Missense_Mutation p.G225R 0.21 deleterious(0) probably_damaging(0.991) TCGA-5C-A9VG-01 1 144868126 144868126 G A PDE4DIP Silent p.N1771N 0.05 TCGA-5C-A9VG-01 1 144892333 144892333 T C PDE4DIP Intron 0.08 TCGA-5C-A9VG-01 1 152080721 152080721 C T TCHH Missense_Mutation p.E1658K 0.10 unknown(0) TCGA-5C-A9VG-01 1 152882767 152882767 A C IVL Missense_Mutation p.H165P 0.44 tolerated(0.2) unknown(0) TCGA-5C-A9VG-01 1 152883444 152883444 G A IVL Missense_Mutation p.G391R 0.08 tolerated(0.33) probably_damaging(0.995) TCGA-5C-A9VG-01 1 154950543 154950543 G A CKS1B Missense_Mutation p.G47D 0.14 deleterious(0) probably_damaging(0.999) TCGA-5C-A9VG-01 1 154986993 154986993 G C ZBTB7B Intron 0.19 TCGA-5C-A9VG-01 1 158646066 158646066 T G SPTA1 Missense_Mutation p.K326T 0.10 tolerated(0.11) probably_damaging(0.925) TCGA-5C-A9VG-01 1 161205749 161205749 G C NR1I3 Missense_Mutation p.S42R 0.06 tolerated(0.09) benign(0.256) TCGA-5C-A9VG-01 1 166958660 166958660 G A MAEL Missense_Mutation p.R24Q 0.11 tolerated(0.14) benign(0.099) TCGA-5C-A9VG-01 1 184801016 184801016 C T FAM129A Missense_Mutation p.G228S 0.10 deleterious(0.01) probably_damaging(0.979) TCGA-5C-A9VG-01 1 20940339 20940339 A G CDA Missense_Mutation p.M91V 0.10 tolerated(0.85) benign(0) TCGA-5C-A9VG-01 1 231299711 231299711 C T TRIM67 Silent p.H332H 0.19 TCGA-5C-A9VG-01 1 38484813 38484813 C A UTP11L Missense_Mutation p.T142N 0.04 tolerated(0.32) benign(0.004) TCGA-5C-A9VG-01 1 70300494 70300494 C T LRRC7 Silent p.L140L 0.17 TCGA-5C-A9VG-01 1 74957809 74957809 G A TNNI3K Missense_Mutation p.S838N 0.24 tolerated_low_confidence(0.14) benign(0.386) TCGA-5C-A9VG-01 1 78408692 78408692 G A NEXN 3'UTR 0.11 TCGA-5C-A9VG-01 20 35695127 35695127 C G RBL1 Missense_Mutation p.K282N 0.36 deleterious(0) benign(0.342) TCGA-5C-A9VG-01 20 44574977 44574977 T C PCIF1 Missense_Mutation p.Y523H 0.35 deleterious(0) probably_damaging(0.989) TCGA-5C-A9VG-01 20 47601303 47601303 C T ARFGEF2 Nonsense_Mutation p.Q666* 0.16 TCGA-5C-A9VG-01 20 50408507 50408510 GCTA CCT SALL4 Nonsense_Mutation p.L171* 0.21 TCGA-5C-A9VG-01 20 57484420 57484420 C T GNAS Missense_Mutation p.R844C 0.29 deleterious(0.01) probably_damaging(1) TCGA-5C-A9VG-01 21 15535777 15535777 A T LIPI Silent p.T344T 0.10 TCGA-5C-A9VG-01 21 34638742 34638742 G C IL10RB 5'UTR 0.11 TCGA-5C-A9VG-01 21 40186286 40186286 A C ETS2 Missense_Mutation p.K92Q 0.16 tolerated(0.05) benign(0.32) TCGA-5C-A9VG-01 22 41523630 41523630 A G EP300 Missense_Mutation p.H349R 0.14 unknown(0) TCGA-5C-A9VG-01 22 42522650 42522650 G A CYP2D6 Missense_Mutation p.R474W 0.14 deleterious(0) probably_damaging(0.929) TCGA-5C-A9VG-01 2 103013553 103013553 G A IL18R1 3'UTR 0.42 TCGA-5C-A9VG-01 2 128480544 128480544 G T WDR33 Missense_Mutation p.Q456K 0.20 deleterious(0.03) unknown(0) TCGA-5C-A9VG-01 2 136499582 136499582 G C UBXN4 Splice_Site p.X28_splice 0.19 TCGA-5C-A9VG-01 2 143676177 143676177 G C KYNU Splice_Site p.X57_splice 0.12 TCGA-5C-A9VG-01 2 160803113 160803113 G A PLA2R1 Intron 0.11 TCGA-5C-A9VG-01 2 168725536 168725536 G T B3GALT1 5'UTR 0.21 TCGA-5C-A9VG-01 2 179315937 179315937 A G PRKRA 5'UTR 0.20 TCGA-5C-A9VG-01 2 179610300 179610300 A T TTN Intron 0.34 TCGA-5C-A9VG-01 2 210560690 210560690 A C MAP2 Silent p.R1266R 0.17 TCGA-5C-A9VG-01 2 211525234 211525234 C T CPS1 Missense_Mutation p.S1267F 0.21 deleterious(0) probably_damaging(0.999) TCGA-5C-A9VG-01 3 102187885 102187885 G T ZPLD1 Missense_Mutation p.R296L 0.07 deleterious(0) probably_damaging(1) TCGA-5C-A9VG-01 3 134898792 134898793 - T EPHB1 Frame_Shift_Ins p.V619Cfs*4 0.27 TCGA-5C-A9VG-01 3 145824364 145824364 A T PLOD2 Missense_Mutation p.D190E 0.08 deleterious(0) probably_damaging(1) TCGA-5C-A9VG-01 3 171944729 171944729 A C FNDC3B Missense_Mutation p.I86L 0.25 deleterious(0.05) benign(0.358) TCGA-5C-A9VG-01 3 193128830 193128830 G T ATP13A4 Missense_Mutation p.L1080I 0.14 deleterious(0.04) benign(0.341) TCGA-5C-A9VG-01 3 28382058 28382058 G A AZI2 Silent p.A17A 0.23 TCGA-5C-A9VG-01 3 29938929 29938929 C T RBMS3 Missense_Mutation p.T284M 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-5C-A9VG-01 3 38496071 38496071 T G ACVR2B Intron 0.13 TCGA-5C-A9VG-01 3 41266113 41266113 C T CTNNB1 Missense_Mutation p.S37F 0.20 deleterious(0) probably_damaging(0.962) TCGA-5C-A9VG-01 3 41831172 41831172 T A ULK4 Missense_Mutation p.Q725L 0.18 deleterious(0.01) probably_damaging(0.917) TCGA-5C-A9VG-01 3 44332377 44332377 A C TOPAZ1 Silent p.R1266R 0.21 TCGA-5C-A9VG-01 3 44803307 44803307 G A KIF15 5'UTR 0.22 TCGA-5C-A9VG-01 3 45875746 45875746 G A LZTFL1 Missense_Mutation p.T123I 0.08 tolerated(0.14) benign(0.002) TCGA-5C-A9VG-01 3 46307580 46307580 T A CCR3 Missense_Mutation p.Y332N 0.21 deleterious(0.02) benign(0.104) TCGA-5C-A9VG-01 3 47037866 47037866 G A NBEAL2 Missense_Mutation p.A753T 0.16 tolerated(0.52) benign(0.005) TCGA-5C-A9VG-01 3 57882869 57882869 A G SLMAP Intron 0.15 TCGA-5C-A9VG-01 3 81630426 81630426 G A GBE1 Silent p.L446L 0.10 TCGA-5C-A9VG-01 3 89528604 89528604 C T EPHA3 Silent p.S968S 0.04 TCGA-5C-A9VG-01 4 125631232 125631232 G C ANKRD50 Missense_Mutation p.D145E 0.40 tolerated(1) benign(0.001) TCGA-5C-A9VG-01 4 40122641 40122641 G A N4BP2 Silent p.G970G 0.23 TCGA-5C-A9VG-01 4 71394915 71394915 C T AMTN Silent p.S115S 0.10 TCGA-5C-A9VG-01 4 74357714 74357714 A G AFM Silent p.P323P 0.23 TCGA-5C-A9VG-01 4 87556471 87556471 T C PTPN13 Missense_Mutation p.I21T 0.16 deleterious(0) benign(0.346) TCGA-5C-A9VG-01 4 88536871 88536871 T C DSPP Silent p.S1019S 0.26 TCGA-5C-A9VG-01 4 88996722 88996722 G T PKD2 Missense_Mutation p.G928V 0.19 tolerated(0.6) benign(0.103) TCGA-5C-A9VG-01 5 139506953 139506954 GT - IGIP 5'UTR 0.15 TCGA-5C-A9VG-01 5 150921988 150921988 A G FAT2 Silent p.N2900N 0.21 TCGA-5C-A9VG-01 5 154172335 154172335 C T LARP1 Nonsense_Mutation p.R163* 0.10 TCGA-5C-A9VG-01 5 26902785 26902785 G T CDH9 Missense_Mutation p.N351K 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-5C-A9VG-01 5 26902786 26902786 T G CDH9 Missense_Mutation p.N351T 0.19 deleterious(0) probably_damaging(0.997) TCGA-5C-A9VG-01 5 37352900 37352900 C A NUP155 Silent p.L165L 0.16 TCGA-5C-A9VG-01 5 52097577 52097577 A - PELO Frame_Shift_Del p.E354Dfs*6 0.11 TCGA-5C-A9VG-01 5 54649070 54649070 C G SKIV2L2 Silent p.R502R 0.07 TCGA-5C-A9VG-01 5 68470853 68470853 G A CCNB1 Missense_Mutation p.M285I 0.12 deleterious(0.03) benign(0.19) TCGA-5C-A9VG-01 5 83239361 83239361 G A EDIL3 Silent p.D440D 0.17 TCGA-5C-A9VG-01 6 127440418 127440418 A T RSPO3 Silent p.G27G 0.09 TCGA-5C-A9VG-01 6 139609802 139609802 T A TXLNB Nonsense_Mutation p.K79* 0.35 TCGA-5C-A9VG-01 6 170878809 170878809 G T TBP Missense_Mutation p.D263Y 0.05 deleterious(0) probably_damaging(0.999) TCGA-5C-A9VG-01 6 28270207 28270207 T C PGBD1 3'UTR 0.33 TCGA-5C-A9VG-01 6 28350309 28350309 G C ZSCAN12 Missense_Mutation p.S591C 0.27 deleterious_low_confidence(0.01) benign(0.258) TCGA-5C-A9VG-01 6 28543068 28543068 A T SCAND3 Missense_Mutation p.S472T 0.09 deleterious_low_confidence(0.01) benign(0.068) TCGA-5C-A9VG-01 6 31323270 31323270 G A HLA-B Missense_Mutation p.T240I 0.19 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-5C-A9VG-01 6 31747209 31747209 C A VARS Silent p.R1131R 0.29 TCGA-5C-A9VG-01 6 33631619 33631619 C G ITPR3 Missense_Mutation p.D370E 0.31 tolerated(0.07) probably_damaging(0.98) TCGA-5C-A9VG-01 6 39881105 39881105 C T MOCS1 Missense_Mutation p.G238D 0.21 tolerated(1) benign(0.002) TCGA-5C-A9VG-01 6 73787165 73787165 A G KCNQ5 Missense_Mutation p.D246G 0.06 deleterious(0) probably_damaging(0.998) TCGA-5C-A9VG-01 6 76423528 76423528 A G SENP6 Missense_Mutation p.E1039G 0.32 deleterious(0) probably_damaging(0.966) TCGA-5C-A9VG-01 6 79944051 79944051 A G HMGN3 Intron 0.57 TCGA-5C-A9VG-01 6 84884544 84884544 T G KIAA1009 Missense_Mutation p.K643Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-5C-A9VG-01 7 100490028 100490028 G A ACHE Nonsense_Mutation p.R494* 0.13 TCGA-5C-A9VG-01 7 104730539 104730539 T C KMT2E Missense_Mutation p.I481T 0.35 deleterious(0.01) benign(0.152) TCGA-5C-A9VG-01 7 112102091 112102091 C T IFRD1 Silent p.I218I 0.23 TCGA-5C-A9VG-01 7 138601674 138601674 G A KIAA1549 Silent p.L900L 0.13 TCGA-5C-A9VG-01 7 1484651 1484651 G A MICALL2 Missense_Mutation p.A352V 0.09 deleterious(0.04) benign(0.063) TCGA-5C-A9VG-01 7 49815606 49815606 G A VWC2 Missense_Mutation p.C192Y 0.17 deleterious(0) possibly_damaging(0.861) TCGA-5C-A9VG-01 7 83014671 83014671 C A SEMA3E Missense_Mutation p.R605L 0.19 deleterious(0) probably_damaging(0.927) TCGA-5C-A9VG-01 7 97498472 97498472 G A ASNS 5'UTR 0.13 TCGA-5C-A9VG-01 8 133858286 133858286 T G PHF20L1 3'UTR 0.41 TCGA-5C-A9VG-01 8 141595331 141595331 G A AGO2 Silent p.S34S 0.26 TCGA-5C-A9VG-01 8 143395792 143395792 C G TSNARE1 Missense_Mutation p.E362Q 0.45 tolerated(0.06) possibly_damaging(0.827) TCGA-5C-A9VG-01 8 145748697 145748698 AT - LRRC24 Frame_Shift_Del p.M235Vfs*40 0.17 TCGA-5C-A9VG-01 8 1905384 1905384 G T ARHGEF10 Silent p.L1330L 0.18 TCGA-5C-A9VG-01 8 3047474 3047474 G A CSMD1 Silent p.N1786N 0.38 TCGA-5C-A9VG-01 8 48744454 48744454 C A PRKDC Missense_Mutation p.R2728L 0.17 possibly_damaging(0.661) TCGA-5C-A9VG-01 8 52321956 52321956 C T PXDNL Missense_Mutation p.G743D 0.44 deleterious(0) probably_damaging(0.999) TCGA-5C-A9VG-01 8 72936129 72936130 - A TRPA1 Frame_Shift_Ins p.L1023Ffs*15 0.18 TCGA-5C-A9VG-01 8 77618110 77618110 G A ZFHX4 Missense_Mutation p.S596N 0.30 benign(0.004) TCGA-5C-A9VG-01 9 129973041 129973041 C A RALGPS1 Intron 0.25 TCGA-5C-A9VG-01 9 134357810 134357810 C A PRRC2B Missense_Mutation p.S1679Y 0.22 deleterious(0) probably_damaging(0.928) TCGA-5C-A9VG-01 9 84562733 84562733 G A RP11-383M4.6 Intron 0.17 TCGA-5C-A9VG-01 9 8733790 8733790 C T PTPRD Silent p.T18T 0.25 TCGA-5C-A9VG-01 X 101095572 101095572 C T NXF5 Silent p.S199S 0.30 TCGA-5C-A9VG-01 X 109561082 109561082 G C AMMECR1 Missense_Mutation p.P73R 0.27 tolerated_low_confidence(0.17) probably_damaging(0.954) TCGA-5C-A9VG-01 X 136649430 136649430 G T ZIC3 Missense_Mutation p.G194C 0.28 deleterious(0) probably_damaging(0.976) TCGA-5C-A9VG-01 X 7811573 7811573 G A VCX Missense_Mutation p.R46H 0.14 tolerated(0.12) unknown(0) TCGA-5C-A9VH-01 10 105361743 105361743 C T SH3PXD2A Missense_Mutation p.V1050I 0.41 tolerated(0.13) benign(0.018) TCGA-5C-A9VH-01 10 106163548 106163548 G A CCDC147 Missense_Mutation p.E701K 0.44 tolerated(0.07) possibly_damaging(0.462) TCGA-5C-A9VH-01 10 17363172 17363172 G A ST8SIA6 Missense_Mutation p.P301L 0.41 deleterious(0) probably_damaging(1) TCGA-5C-A9VH-01 10 28527612 28527612 A G MPP7 5'UTR 0.43 TCGA-5C-A9VH-01 10 38654359 38654359 C T HSD17B7P2 Intron 0.34 TCGA-5C-A9VH-01 10 54042015 54042015 C T PRKG1 Missense_Mutation p.H550Y 0.36 deleterious(0) probably_damaging(1) TCGA-5C-A9VH-01 10 74034129 74034129 C G DDIT4 Missense_Mutation p.S52W 0.41 deleterious(0) probably_damaging(0.925) TCGA-5C-A9VH-01 10 99080856 99080856 G C FRAT1 3'UTR 0.43 TCGA-5C-A9VH-01 11 102962506 102962506 G A DCUN1D5 Intron 0.08 TCGA-5C-A9VH-01 11 119213689 119213689 G T MFRP Silent p.P383P 0.39 TCGA-5C-A9VH-01 11 121986326 121986326 T A BLID Missense_Mutation p.N102I 0.41 deleterious_low_confidence(0) benign(0.011) TCGA-5C-A9VH-01 11 124626226 124626226 C A ESAM Missense_Mutation p.G162C 0.28 deleterious(0) probably_damaging(0.995) TCGA-5C-A9VH-01 11 124791274 124791274 C T HEPACAM Silent p.P337P 0.40 TCGA-5C-A9VH-01 11 18195075 18195075 G C MRGPRX4 Missense_Mutation p.S91T 0.29 tolerated(0.39) benign(0.005) TCGA-5C-A9VH-01 11 57983067 57983067 A T OR1S1 Missense_Mutation p.D284V 0.25 deleterious(0) probably_damaging(0.965) TCGA-5C-A9VH-01 11 62677923 62677927 TTCTC - CHRM1 Frame_Shift_Del p.E216Pfs*32 0.46 TCGA-5C-A9VH-01 11 94281852 94281852 A T FUT4 3'UTR 0.40 TCGA-5C-A9VH-01 12 11150332 11150332 A G TAS2R20 Missense_Mutation p.I48T 0.37 deleterious(0) benign(0.395) TCGA-5C-A9VH-01 12 113876000 113876000 G A SDSL 3'UTR 0.55 TCGA-5C-A9VH-01 12 113876001 113876001 G T SDSL 3'UTR 0.60 TCGA-5C-A9VH-01 12 124106211 124106211 C G EIF2B1 3'UTR 0.50 TCGA-5C-A9VH-01 12 51634874 51634874 G T DAZAP2 Intron 0.39 TCGA-5C-A9VH-01 12 53566426 53566426 C G CSAD Missense_Mutation p.E72Q 0.41 tolerated(0.07) possibly_damaging(0.833) TCGA-5C-A9VH-01 12 56844947 56844947 G A MIP 3'UTR 0.47 TCGA-5C-A9VH-01 12 64377754 64377754 A T SRGAP1 Missense_Mutation p.Q32L 0.45 tolerated(1) benign(0.002) TCGA-5C-A9VH-01 12 6602390 6602390 G T MRPL51 5'UTR 0.30 TCGA-5C-A9VH-01 12 6787570 6787570 C A ZNF384 Missense_Mutation p.A137S 0.33 tolerated(0.79) benign(0.041) TCGA-5C-A9VH-01 12 85518293 85518293 A G LRRIQ1 Missense_Mutation p.K1335E 0.44 tolerated(0.2) benign(0.037) TCGA-5C-A9VH-01 13 25378454 25378454 T A RNF17 Missense_Mutation p.F660I 0.36 tolerated(0.4) benign(0.002) TCGA-5C-A9VH-01 13 53608515 53608515 C T OLFM4 Silent p.D79D 0.25 TCGA-5C-A9VH-01 13 77836229 77836229 C T MYCBP2 Missense_Mutation p.A498T 0.30 possibly_damaging(0.825) TCGA-5C-A9VH-01 14 24600778 24600778 G T RP11-468E2.6 Missense_Mutation p.E190D 0.07 tolerated_low_confidence(0.07) benign(0) TCGA-5C-A9VH-01 14 25076509 25076509 C - GZMH Frame_Shift_Del p.G148Vfs*5 0.35 TCGA-5C-A9VH-01 14 88857749 88857749 G T SPATA7 Missense_Mutation p.R15I 0.35 deleterious(0.02) possibly_damaging(0.692) TCGA-5C-A9VH-01 14 92413734 92413734 G C FBLN5 5'UTR 0.35 TCGA-5C-A9VH-01 15 45410034 45410034 C T DUOXA2 Missense_Mutation p.P297L 0.52 tolerated(0.08) benign(0.013) TCGA-5C-A9VH-01 15 56968993 56968993 A G ZNF280D Missense_Mutation p.S429P 0.51 tolerated(0.06) benign(0.148) TCGA-5C-A9VH-01 15 75968199 75968199 T C CSPG4 Missense_Mutation p.N2221D 0.29 deleterious(0.01) possibly_damaging(0.653) TCGA-5C-A9VH-01 15 77329597 77329597 G T PSTPIP1 3'UTR 0.56 TCGA-5C-A9VH-01 16 18804487 18804487 G A ARL6IP1 3'UTR 0.30 TCGA-5C-A9VH-01 16 20335564 20335564 T C GP2 Missense_Mutation p.I37V 0.44 tolerated(0.62) benign(0) TCGA-5C-A9VH-01 16 47292650 47292650 C A ITFG1 Missense_Mutation p.G408V 0.18 deleterious(0) probably_damaging(0.999) TCGA-5C-A9VH-01 16 4867670 4867670 C T GLYR1 Missense_Mutation p.G279R 0.44 deleterious(0) probably_damaging(1) TCGA-5C-A9VH-01 16 69356497 69356497 T C VPS4A Missense_Mutation p.M369T 0.08 tolerated(1) benign(0) TCGA-5C-A9VH-01 16 81232485 81232485 A G PKD1L2 Missense_Mutation p.I442T 0.29 deleterious(0) possibly_damaging(0.474) TCGA-5C-A9VH-01 17 19316655 19316655 C A RNF112 Silent p.G217G 0.32 TCGA-5C-A9VH-01 17 29162604 29162604 A G ATAD5 Missense_Mutation p.K502R 0.42 tolerated(0.06) benign(0.271) TCGA-5C-A9VH-01 17 34893442 34893442 A G PIGW Silent p.T164T 0.31 TCGA-5C-A9VH-01 17 36508540 36508540 G A SOCS7 Missense_Mutation p.S138N 0.41 tolerated_low_confidence(0.18) benign(0.213) TCGA-5C-A9VH-01 17 36508541 36508541 C G SOCS7 Missense_Mutation p.S138R 0.41 deleterious_low_confidence(0) benign(0.307) TCGA-5C-A9VH-01 17 41246777 41246777 A G BRCA1 Silent p.H257H 0.46 TCGA-5C-A9VH-01 17 42144012 42144012 C A LSM12 5'UTR 0.39 TCGA-5C-A9VH-01 17 65174829 65174829 C G HELZ Missense_Mutation p.R459P 0.25 deleterious(0) probably_damaging(0.996) TCGA-5C-A9VH-01 17 77808906 77808906 C A CBX4 Nonsense_Mutation p.E179* 0.34 TCGA-5C-A9VH-01 18 48604747 48604747 C G SMAD4 Missense_Mutation p.C523W 0.65 deleterious(0) probably_damaging(0.998) TCGA-5C-A9VH-01 18 60570211 60570211 G C PHLPP1 Missense_Mutation p.R820T 0.14 tolerated(0.11) benign(0.101) TCGA-5C-A9VH-01 18 77474844 77474844 A T CTDP1 Missense_Mutation p.S462C 0.53 deleterious(0.01) possibly_damaging(0.592) TCGA-5C-A9VH-01 19 14006250 14006250 C T C19orf57 Silent p.E47E 0.39 TCGA-5C-A9VH-01 19 3449113 3449113 C T NFIC Missense_Mutation p.R354W 0.43 deleterious(0) probably_damaging(0.993) TCGA-5C-A9VH-01 19 37647217 37647217 C A CTC-454I21.3 Missense_Mutation p.R26I 0.35 deleterious(0) probably_damaging(0.954) TCGA-5C-A9VH-01 19 39915656 39915656 G C PLEKHG2 Missense_Mutation p.G1295R 0.46 deleterious_low_confidence(0) probably_damaging(1) TCGA-5C-A9VH-01 19 41129571 41129571 G A LTBP4 Missense_Mutation p.A1273T 0.45 tolerated(0.39) benign(0.167) TCGA-5C-A9VH-01 19 7763670 7763670 G T FCER2 Silent p.T31T 0.34 TCGA-5C-A9VH-01 19 813388 813388 C T LPPR3 Missense_Mutation p.E475K 0.38 tolerated(0.86) probably_damaging(0.953) TCGA-5C-A9VH-01 1 109191371 109191371 G A HENMT1 Silent p.F333F 0.65 TCGA-5C-A9VH-01 1 150053492 150053492 G T VPS45 Silent p.V252V 0.23 TCGA-5C-A9VH-01 1 154201144 154201144 C T UBAP2L Silent p.D74D 0.18 TCGA-5C-A9VH-01 1 154962718 154962718 A T FLAD1 Missense_Mutation p.Q450L 0.44 deleterious(0.02) benign(0.405) TCGA-5C-A9VH-01 1 168250458 168250458 A G TBX19 Missense_Mutation p.I44V 0.22 tolerated(0.61) benign(0.002) TCGA-5C-A9VH-01 1 171176859 171176859 T C FMO2 Silent p.L396L 0.23 TCGA-5C-A9VH-01 1 176176050 176176050 G A RFWD2 Missense_Mutation p.S22F 0.22 deleterious_low_confidence(0) unknown(0) TCGA-5C-A9VH-01 1 176564000 176564000 T C PAPPA2 Silent p.R420R 0.24 TCGA-5C-A9VH-01 1 19557403 19557403 G T EMC1 Missense_Mutation p.P667T 0.19 tolerated(0.05) benign(0.027) TCGA-5C-A9VH-01 1 205493366 205493366 A G CDK18 Missense_Mutation p.S124G 0.44 deleterious(0.01) benign(0.041) TCGA-5C-A9VH-01 1 218578606 218578606 G C TGFB2 Missense_Mutation p.E176Q 0.19 deleterious(0.05) benign(0.401) TCGA-5C-A9VH-01 1 226923826 226923826 C - ITPKB Frame_Shift_Del p.G445Efs*44 0.14 TCGA-5C-A9VH-01 1 245862336 245862336 G C KIF26B Missense_Mutation p.E2059Q 0.45 tolerated(0.46) unknown(0) TCGA-5C-A9VH-01 1 247695293 247695293 C T OR2C3 Missense_Mutation p.C174Y 0.25 deleterious(0.01) benign(0.023) TCGA-5C-A9VH-01 20 31760750 31760750 A G BPIFA2 Missense_Mutation p.K57R 0.39 deleterious(0.01) probably_damaging(0.979) TCGA-5C-A9VH-01 20 35060202 35060202 G A DLGAP4 Missense_Mutation p.D28N 0.49 tolerated(0.1) probably_damaging(0.983) TCGA-5C-A9VH-01 21 22782741 22782741 A G NCAM2 Missense_Mutation p.N448S 0.39 deleterious(0.02) benign(0.219) TCGA-5C-A9VH-01 22 19418983 19418983 G A HIRA Missense_Mutation p.P6L 0.40 deleterious(0.01) benign(0.061) TCGA-5C-A9VH-01 22 41256898 41256898 A C DNAJB7 3'UTR 0.64 TCGA-5C-A9VH-01 2 102448183 102448183 T C MAP4K4 Missense_Mutation p.V170A 0.25 deleterious_low_confidence(0) unknown(0) TCGA-5C-A9VH-01 2 11300609 11300609 G T PQLC3 Missense_Mutation p.R54L 0.29 tolerated(0.2) possibly_damaging(0.753) TCGA-5C-A9VH-01 2 128184696 128184696 T A PROC Missense_Mutation p.S232T 0.40 tolerated(0.08) benign(0.014) TCGA-5C-A9VH-01 2 179596477 179596477 A G TTN Missense_Mutation p.C5709R 0.34 TCGA-5C-A9VH-01 2 204031020 204031020 G A NBEAL1 Missense_Mutation p.G1926R 0.26 deleterious(0) benign(0.32) TCGA-5C-A9VH-01 2 217724245 217724245 C T TNP1 3'UTR 0.58 TCGA-5C-A9VH-01 2 238253721 238253721 T C COL6A3 Missense_Mutation p.Q2381R 0.48 unknown(0) TCGA-5C-A9VH-01 2 71295557 71295557 C A NAGK 5'UTR 0.43 TCGA-5C-A9VH-01 2 74900921 74900921 G A SEMA4F Missense_Mutation p.R263H 0.40 tolerated(0.24) benign(0.004) TCGA-5C-A9VH-01 3 108572654 108572654 A G TRAT1 Missense_Mutation p.E164G 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-5C-A9VH-01 3 14861536 14861536 T A FGD5 Missense_Mutation p.S320T 0.35 tolerated(0.4) benign(0.006) TCGA-5C-A9VH-01 3 178962390 178962390 G A KCNMB3 Missense_Mutation p.H118Y 0.08 tolerated(0.16) benign(0.094) TCGA-5C-A9VH-01 3 48520585 48520585 C T SHISA5 Splice_Site p.X105_splice 0.34 TCGA-5C-A9VH-01 3 77147199 77147199 G A ROBO2 Silent p.R48R 0.38 TCGA-5C-A9VH-01 3 97705698 97705698 C T GABRR3 Silent p.S411S 0.10 TCGA-5C-A9VH-01 4 104640792 104640792 C - TACR3 Frame_Shift_Del p.G14Vfs*9 0.26 TCGA-5C-A9VH-01 4 106766631 106766631 G T GSTCD Missense_Mutation p.R600L 0.40 deleterious(0) probably_damaging(0.998) TCGA-5C-A9VH-01 4 186544464 186544464 G T SORBS2 Missense_Mutation p.P803T 0.41 deleterious(0) probably_damaging(0.999) TCGA-5C-A9VH-01 4 39280267 39280267 G C WDR19 Silent p.L1342L 0.44 TCGA-5C-A9VH-01 4 42154069 42154069 G T BEND4 Missense_Mutation p.P31H 0.36 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-5C-A9VH-01 4 5399957 5399957 T C STK32B Missense_Mutation p.L153P 0.38 deleterious(0) probably_damaging(0.938) TCGA-5C-A9VH-01 4 76903159 76903159 T C SDAD1 Missense_Mutation p.N41S 0.42 tolerated(0.42) benign(0.011) TCGA-5C-A9VH-01 5 138718987 138718987 G A SLC23A1 5'Flank 0.39 TCGA-5C-A9VH-01 5 140589288 140589288 A T PCDHB12 Missense_Mutation p.D270V 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-5C-A9VH-01 5 141248468 141248468 G A PCDH1 Missense_Mutation p.P190L 0.43 deleterious(0) probably_damaging(1) TCGA-5C-A9VH-01 5 178202325 178202325 T C AACSP1 RNA 0.27 TCGA-5C-A9VH-01 5 34823606 34823607 GA - RAI14 Frame_Shift_Del p.E558Vfs*15 0.27 TCGA-5C-A9VH-01 5 37834855 37834855 T - GDNF Frame_Shift_Del p.H32Pfs*33 0.21 TCGA-5C-A9VH-01 5 52405238 52405238 T C MOCS2 5'UTR 0.50 TCGA-5C-A9VH-01 5 72469952 72469952 C G TMEM174 Missense_Mutation p.S231C 0.29 deleterious(0.03) possibly_damaging(0.875) TCGA-5C-A9VH-01 6 12121246 12121246 T C HIVEP1 Silent p.Y406Y 0.34 TCGA-5C-A9VH-01 6 12292638 12292638 A G EDN1 Silent p.P43P 0.32 TCGA-5C-A9VH-01 6 25850803 25850803 A G SLC17A3 Missense_Mutation p.S293P 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-5C-A9VH-01 6 26018037 26018037 C T HIST1H1A 5'UTR 0.43 TCGA-5C-A9VH-01 6 28093436 28093445 CAGAATGCCA - ZSCAN16 Frame_Shift_Del p.E73Pfs*6 0.23 TCGA-5C-A9VH-01 6 32117406 32117406 G T PRRT1 Missense_Mutation p.R218S 0.51 deleterious(0.04) possibly_damaging(0.801) TCGA-5C-A9VH-01 6 32190405 32190405 C T NOTCH4 Missense_Mutation p.E112K 0.23 tolerated(0.19) benign(0.009) TCGA-5C-A9VH-01 6 39048499 39048499 G A GLP1R Missense_Mutation p.C403Y 0.35 deleterious(0) possibly_damaging(0.898) TCGA-5C-A9VH-01 6 39048500 39048500 C A GLP1R Nonsense_Mutation p.C403* 0.35 TCGA-5C-A9VH-01 6 76023250 76023250 C T FILIP1 Silent p.G766G 0.33 TCGA-5C-A9VH-01 6 80656928 80656928 T C ELOVL4 Silent p.V23V 0.05 TCGA-5C-A9VH-01 7 131195724 131195724 C T PODXL Missense_Mutation p.R190Q 0.36 tolerated(0.62) benign(0.009) TCGA-5C-A9VH-01 7 152132847 152132847 C T KMT2C Missense_Mutation p.V9M 0.30 benign(0.002) TCGA-5C-A9VH-01 7 47408695 47408695 G T TNS3 Missense_Mutation p.S516R 0.30 deleterious(0) probably_damaging(0.997) TCGA-5C-A9VH-01 7 6547714 6547714 G T GRID2IP Silent p.R816R 0.27 TCGA-5C-A9VH-01 7 8475318 8475318 G T NXPH1 5'UTR 0.33 TCGA-5C-A9VH-01 8 10690495 10690495 C T SOX7 Splice_Site p.X44_splice 0.44 TCGA-5C-A9VH-01 8 143747230 143747230 G A JRK RNA 0.20 TCGA-5C-A9VH-01 8 144681433 144681433 C A TIGD5 Missense_Mutation p.L454I 0.20 tolerated(0.15) probably_damaging(0.956) TCGA-5C-A9VH-01 8 48883923 48883923 A T MCM4 Missense_Mutation p.N608I 0.20 deleterious(0) probably_damaging(0.992) TCGA-5C-A9VH-01 9 127218951 127218951 C G GPR144 Silent p.P500P 0.59 TCGA-5C-A9VH-01 9 21077442 21077442 G T IFNB1 Missense_Mutation p.L143M 0.56 deleterious(0) probably_damaging(0.997) TCGA-5C-A9VH-01 X 151818999 151818999 C A GABRQ Nonsense_Mutation p.S286* 0.73 TCGA-5C-A9VH-01 X 155006651 155006651 G T SPRY3 3'UTR 0.29 TCGA-5C-A9VH-01 X 155006652 155006652 G T SPRY3 3'UTR 0.29 TCGA-5C-A9VH-01 X 51150121 51150121 G T CXorf67 Missense_Mutation p.G85W 0.09 tolerated(0.06) probably_damaging(0.988) TCGA-5C-A9VH-01 X 69509318 69509318 A G PDZD11 Intron 0.78 TCGA-5C-A9VH-01 X 74494410 74494410 G T UPRT Silent p.G107G 0.86 TCGA-5C-A9VH-01 Y 4967469 4967469 G A PCDH11Y Missense_Mutation p.R617K 0.74 tolerated(0.81) benign(0.001) TCGA-5C-AAPD-01 10 105923911 105923911 G T WDR96 Missense_Mutation p.Q1063K 0.47 tolerated(0.05) benign(0.06) TCGA-5C-AAPD-01 11 108384916 108384916 C T EXPH5 Missense_Mutation p.D440N 0.21 deleterious(0.04) probably_damaging(1) TCGA-5C-AAPD-01 11 1944122 1944122 G T TNNT3 Splice_Site p.X6_splice 0.07 TCGA-5C-AAPD-01 11 62327913 62327913 C T EEF1G Missense_Mutation p.D291N 0.23 deleterious(0.03) possibly_damaging(0.494) TCGA-5C-AAPD-01 11 62491431 62491431 C T HNRNPUL2 Missense_Mutation p.A236T 0.17 tolerated(0.06) benign(0.01) TCGA-5C-AAPD-01 11 63767228 63767228 G T MACROD1 Silent p.I224I 0.19 TCGA-5C-AAPD-01 11 6913415 6913415 A T OR2D2 Missense_Mutation p.I106N 0.22 tolerated(0.31) benign(0.19) TCGA-5C-AAPD-01 12 112082089 112082089 C T BRAP Missense_Mutation p.A565T 0.25 tolerated(0.11) benign(0.12) TCGA-5C-AAPD-01 12 112638476 112638476 C G HECTD4 Missense_Mutation p.V2699L 0.29 probably_damaging(0.961) TCGA-5C-AAPD-01 12 133358980 133358980 C T GOLGA3 Missense_Mutation p.G1123S 0.27 deleterious(0) probably_damaging(1) TCGA-5C-AAPD-01 12 4736121 4736121 G T AKAP3 Silent p.A649A 0.30 TCGA-5C-AAPD-01 12 48368646 48368646 C T COL2A1 Splice_Site p.X1296_splice 0.29 TCGA-5C-AAPD-01 12 49884489 49884489 A G SPATS2 Missense_Mutation p.E80G 0.27 deleterious(0) probably_damaging(0.998) TCGA-5C-AAPD-01 12 5025454 5025454 T C KCNA1 3'UTR 0.25 TCGA-5C-AAPD-01 12 56492143 56492143 C T ERBB3 Intron 0.29 TCGA-5C-AAPD-01 12 57180989 57180989 A C HSD17B6 Missense_Mutation p.T273P 0.24 deleterious(0) probably_damaging(0.966) TCGA-5C-AAPD-01 12 86198626 86198626 G A RASSF9 Missense_Mutation p.P388S 0.28 tolerated(0.35) benign(0.001) TCGA-5C-AAPD-01 13 51591182 51591182 G A GUCY1B2 RNA 0.30 TCGA-5C-AAPD-01 13 53049113 53049113 G A CKAP2 Missense_Mutation p.R630H 0.53 tolerated(0.05) benign(0.023) TCGA-5C-AAPD-01 14 51060573 51060573 T G ATL1 Missense_Mutation p.L178V 0.21 deleterious(0.03) benign(0.053) TCGA-5C-AAPD-01 14 52182185 52182185 T C FRMD6 Missense_Mutation p.L331P 0.06 deleterious(0.02) benign(0.133) TCGA-5C-AAPD-01 14 73957733 73957733 T G HEATR4 Intron 0.34 TCGA-5C-AAPD-01 14 96752158 96752158 C A ATG2B Missense_Mutation p.M2057I 0.37 deleterious(0) possibly_damaging(0.899) TCGA-5C-AAPD-01 16 49671334 49671334 T A ZNF423 Missense_Mutation p.I577F 0.42 tolerated(0.3) benign(0.197) TCGA-5C-AAPD-01 16 701923 701923 A C WDR90 Missense_Mutation p.S313R 0.21 tolerated(0.45) benign(0.016) TCGA-5C-AAPD-01 17 60679436 60679436 G T TLK2 Missense_Mutation p.G585V 0.28 deleterious(0) probably_damaging(0.997) TCGA-5C-AAPD-01 17 62265633 62265633 A C TEX2 Silent p.L780L 0.38 TCGA-5C-AAPD-01 17 7579559 7579559 A - TP53 Frame_Shift_Del p.L43* 0.28 TCGA-5C-AAPD-01 18 10471890 10471890 G A APCDD1 Silent p.V202V 0.53 TCGA-5C-AAPD-01 18 32949594 32949594 G T ZNF396 Missense_Mutation p.S198Y 0.46 tolerated(1) probably_damaging(0.919) TCGA-5C-AAPD-01 18 44057472 44057472 T C LOXHD1 Intron 0.09 TCGA-5C-AAPD-01 18 74659514 74659514 T C ZNF236 Missense_Mutation p.L1605P 0.42 deleterious(0) probably_damaging(0.979) TCGA-5C-AAPD-01 19 11891848 11891848 C G ZNF441 Missense_Mutation p.F403L 0.25 tolerated(0.65) benign(0.044) TCGA-5C-AAPD-01 19 15221118 15221118 C T SYDE1 Missense_Mutation p.P345L 0.26 tolerated(0.38) benign(0.003) TCGA-5C-AAPD-01 19 17837234 17837234 G T MAP1S Silent p.R347R 0.38 TCGA-5C-AAPD-01 19 38160695 38160695 A G ZNF781 Missense_Mutation p.C119R 0.29 tolerated(0.2) probably_damaging(1) TCGA-5C-AAPD-01 19 41858864 41858864 C T TGFB1 Missense_Mutation p.G29E 0.25 deleterious(0.04) possibly_damaging(0.576) TCGA-5C-AAPD-01 19 49655258 49655258 C T HRC Intron 0.30 TCGA-5C-AAPD-01 19 51534168 51534168 G T KLK12 Missense_Mutation p.P156Q 0.23 deleterious(0.01) probably_damaging(0.989) TCGA-5C-AAPD-01 19 55221615 55221615 C A AC098784.2 3'Flank 0.34 TCGA-5C-AAPD-01 1 109538417 109538417 G C WDR47 Silent p.G500G 0.26 TCGA-5C-AAPD-01 1 109538418 109538418 C A WDR47 Missense_Mutation p.G500V 0.26 tolerated(0.27) benign(0.001) TCGA-5C-AAPD-01 1 151546817 151546817 G T TUFT1 Silent p.V222V 0.23 TCGA-5C-AAPD-01 1 156520099 156520099 G A IQGAP3 Silent p.R593R 0.51 TCGA-5C-AAPD-01 1 157772291 157772291 C T FCRL1 Silent p.Q161Q 0.21 TCGA-5C-AAPD-01 1 160012115 160012115 G A KCNJ10 Missense_Mutation p.L70F 0.18 tolerated(0.21) possibly_damaging(0.521) TCGA-5C-AAPD-01 1 167095331 167095331 C A DUSP27 Silent p.A321A 0.40 TCGA-5C-AAPD-01 1 204159709 204159709 T G KISS1 Missense_Mutation p.K107T 0.22 deleterious(0) benign(0.254) TCGA-5C-AAPD-01 1 3417558 3417558 G C MEGF6 Silent p.P849P 0.44 TCGA-5C-AAPD-01 1 3599745 3599745 G A TP73 Splice_Site p.X62_splice 0.34 TCGA-5C-AAPD-01 1 47489477 47489477 G A CYP4X1 5'UTR 0.24 TCGA-5C-AAPD-01 1 67666504 67666505 - T IL23R Frame_Shift_Ins p.L193Ffs*24 0.20 TCGA-5C-AAPD-01 1 8416253 8416255 GGT - RERE In_Frame_Del p.H1464del 0.29 TCGA-5C-AAPD-01 20 35422556 35422556 C T SOGA1 Missense_Mutation p.R1310Q 0.24 tolerated(0.19) benign(0.037) TCGA-5C-AAPD-01 20 3845305 3845305 A G MAVS Missense_Mutation p.N343S 0.28 tolerated(0.85) benign(0.092) TCGA-5C-AAPD-01 20 47558450 47558450 T C ARFGEF2 Missense_Mutation p.Y68H 0.24 deleterious(0.03) benign(0.293) TCGA-5C-AAPD-01 20 5919267 5919267 G A TRMT6 Missense_Mutation p.L470F 0.24 deleterious_low_confidence(0.05) possibly_damaging(0.671) TCGA-5C-AAPD-01 22 20458622 20458622 C T RIMBP3 Missense_Mutation p.V894M 0.12 deleterious(0) benign(0.438) TCGA-5C-AAPD-01 22 21343966 21344002 GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA - LZTR1 Splice_Site p.X217_splice 0.22 TCGA-5C-AAPD-01 22 26348383 26348383 A G MYO18B Silent p.R1988R 0.34 TCGA-5C-AAPD-01 22 46733707 46733707 C A TRMU Missense_Mutation p.N38K 0.29 deleterious(0) probably_damaging(1) TCGA-5C-AAPD-01 2 102003699 102003699 A G CREG2 Missense_Mutation p.F74S 0.24 deleterious(0.01) possibly_damaging(0.677) TCGA-5C-AAPD-01 2 141665597 141665597 T A LRP1B Missense_Mutation p.E1123D 0.27 possibly_damaging(0.894) TCGA-5C-AAPD-01 2 152235980 152235981 - A TNFAIP6 Frame_Shift_Ins p.N258Kfs*10 0.16 TCGA-5C-AAPD-01 2 15651378 15651378 C T NBAS Silent p.P281P 0.27 TCGA-5C-AAPD-01 2 172650192 172650192 G T SLC25A12 Missense_Mutation p.P464H 0.19 tolerated(0.07) probably_damaging(0.988) TCGA-5C-AAPD-01 2 17698736 17698737 - T RAD51AP2 Frame_Shift_Ins p.T316Nfs*13 0.33 TCGA-5C-AAPD-01 2 20490528 20490528 C T PUM2 Silent p.Q392Q 0.24 TCGA-5C-AAPD-01 2 27676861 27676861 G A IFT172 Silent p.L1233L 0.25 TCGA-5C-AAPD-01 2 37041407 37041407 A C VIT Missense_Mutation p.H662P 0.25 deleterious(0) probably_damaging(1) TCGA-5C-AAPD-01 2 39046078 39046104 CTTCTTTTGTACTTAGCTGCCATCCCT - DHX57 Splice_Site p.X1130_splice 0.20 TCGA-5C-AAPD-01 4 1961231 1961231 A G WHSC1 Missense_Mutation p.T1007A 0.43 tolerated(0.18) benign(0.047) TCGA-5C-AAPD-01 4 38829121 38829121 A T TLR6 Missense_Mutation p.S658R 0.50 deleterious(0.01) benign(0.008) TCGA-5C-AAPD-01 4 69343097 69343097 C A TMPRSS11E Missense_Mutation p.P240T 0.39 deleterious(0.02) possibly_damaging(0.894) TCGA-5C-AAPD-01 5 140255592 140255592 G T PCDHA12 Nonsense_Mutation p.E179* 0.35 TCGA-5C-AAPD-01 6 28539781 28539781 T G SCAND3 Missense_Mutation p.L1295F 0.22 deleterious_low_confidence(0.03) probably_damaging(0.992) TCGA-5C-AAPD-01 6 42146134 42146134 C T GUCA1A Silent p.C106C 0.27 TCGA-5C-AAPD-01 6 43738861 43738876 GCCCGGGCCTCGGGCC A VEGFA In_Frame_Del p.A140_G144del 0.41 TCGA-5C-AAPD-01 6 44148397 44148397 G T CAPN11 Nonsense_Mutation p.E582* 0.22 TCGA-5C-AAPD-01 6 64408443 64408443 A G PHF3 Missense_Mutation p.Y977C 0.25 deleterious(0) probably_damaging(1) TCGA-5C-AAPD-01 7 105205709 105205709 A G EFCAB10 3'UTR 0.31 TCGA-5C-AAPD-01 7 150883974 150883974 C G ASB10 Missense_Mutation p.A82P 0.26 tolerated(0.07) benign(0.05) TCGA-5C-AAPD-01 7 27211712 27211712 G T HOXA10 Missense_Mutation p.Q347K 0.30 deleterious(0) probably_damaging(1) TCGA-5C-AAPD-01 7 6474641 6474641 T C DAGLB Missense_Mutation p.I144V 0.23 tolerated(0.33) benign(0.015) TCGA-5C-AAPD-01 8 101624286 101624286 G A SNX31 Missense_Mutation p.P185S 0.11 deleterious(0) probably_damaging(0.973) TCGA-5C-AAPD-01 8 38848702 38848702 C A TM2D2 3'UTR 0.38 TCGA-5C-AAPD-01 8 38848703 38848703 C A TM2D2 3'UTR 0.38 TCGA-5C-AAPD-01 8 95161092 95161092 T A CDH17 Missense_Mutation p.R603W 0.22 deleterious(0) possibly_damaging(0.875) TCGA-5C-AAPD-01 9 127616557 127616557 G A WDR38 Nonsense_Mutation p.W48* 0.09 TCGA-5C-AAPD-01 9 129831597 129831597 T - RALGPS1 Frame_Shift_Del p.I191Tfs*4 0.22 TCGA-5C-AAPD-01 9 130649801 130649801 G A ST6GALNAC6 Silent p.H258H 0.09 TCGA-5C-AAPD-01 9 133333917 133333917 C G ASS1 Missense_Mutation p.Q102E 0.32 tolerated(0.1) possibly_damaging(0.462) TCGA-5C-AAPD-01 9 77401029 77401029 C T TRPM6 Missense_Mutation p.E894K 0.28 deleterious(0) possibly_damaging(0.7) TCGA-5C-AAPD-01 X 129505619 129505619 G T SLC25A14 Splice_Site p.X312_splice 0.07 TCGA-5C-AAPD-01 X 2827944 2827966 GGCCGGGAGCACCCCCGGCCAGT - ARSD Frame_Shift_Del p.H397Rfs*32 0.66 TCGA-5C-AAPD-01 X 53457918 53457918 T C RIBC1 Silent p.F374F 0.32 TCGA-5R-AA1C-01 10 101180434 101180434 A C GOT1 Missense_Mutation p.C83G 0.42 deleterious(0.03) benign(0.024) TCGA-5R-AA1C-01 10 12041933 12041933 T G UPF2 Missense_Mutation p.N577T 0.39 tolerated(0.07) benign(0.262) TCGA-5R-AA1C-01 10 127753571 127753571 C A ADAM12 Splice_Site p.X475_splice 0.43 TCGA-5R-AA1C-01 10 226050 226050 A G ZMYND11 Missense_Mutation p.N33S 0.39 deleterious(0.05) benign(0.007) TCGA-5R-AA1C-01 10 64893159 64893164 CCCTTG - NRBF2 5'UTR 0.33 TCGA-5R-AA1C-01 11 125550821 125550821 T C ACRV1 5'UTR 0.43 TCGA-5R-AA1C-01 11 1606214 1606214 C T KRTAP5-1 Missense_Mutation p.C89Y 0.38 deleterious_low_confidence(0) unknown(0) TCGA-5R-AA1C-01 11 22399483 22399483 T G SLC17A6 3'UTR 0.39 TCGA-5R-AA1C-01 11 62415265 62415265 A G INTS5 Missense_Mutation p.F763L 0.40 tolerated(0.3) benign(0) TCGA-5R-AA1C-01 11 65365864 65365864 G T MAP3K11 Missense_Mutation p.D814E 0.34 deleterious_low_confidence(0.03) probably_damaging(0.935) TCGA-5R-AA1C-01 11 67205935 67205935 C T CORO1B Missense_Mutation p.R461Q 0.05 tolerated(0.26) benign(0) TCGA-5R-AA1C-01 12 102125389 102125389 T A SYCP3 Missense_Mutation p.Q170L 0.30 deleterious(0) probably_damaging(0.985) TCGA-5R-AA1C-01 12 26492300 26492301 - AAGGCTAG ITPR2 3'UTR 0.14 TCGA-5R-AA1C-01 12 43833794 43833794 T C ADAMTS20 Missense_Mutation p.Q790R 0.37 tolerated(0.35) benign(0.373) TCGA-5R-AA1C-01 12 63991681 63991681 T C DPY19L2 Missense_Mutation p.S457G 0.36 tolerated(0.57) benign(0.009) TCGA-5R-AA1C-01 13 53624703 53624703 C A OLFM4 Missense_Mutation p.R444S 0.37 deleterious(0) probably_damaging(0.999) TCGA-5R-AA1C-01 14 21955791 21955791 T C TOX4 Missense_Mutation p.V86A 0.46 tolerated(0.34) benign(0.024) TCGA-5R-AA1C-01 14 31597196 31597196 A G HECTD1 Silent p.G1592G 0.36 TCGA-5R-AA1C-01 14 37135701 37135701 G A PAX9 Silent p.V222V 0.38 TCGA-5R-AA1C-01 14 64920556 64920556 A C MTHFD1 Missense_Mutation p.K848Q 0.40 tolerated(0.32) probably_damaging(1) TCGA-5R-AA1C-01 14 69994592 69994592 C T PLEKHD1 Missense_Mutation p.R432C 0.46 deleterious(0) probably_damaging(0.998) TCGA-5R-AA1C-01 14 93653248 93653248 C G TMEM251 3'UTR 0.06 TCGA-5R-AA1C-01 14 94139742 94139742 C T UNC79 Silent p.L2090L 0.26 TCGA-5R-AA1C-01 15 40751536 40751536 A G BAHD1 Silent p.P291P 0.43 TCGA-5R-AA1C-01 15 51839504 51839504 T C DMXL2 Silent p.Q223Q 0.38 TCGA-5R-AA1C-01 15 69011783 69011783 T C CORO2B Silent p.Y401Y 0.41 TCGA-5R-AA1C-01 15 77224707 77224707 T A RCN2 Missense_Mutation p.D50E 0.33 tolerated(1) benign(0.001) TCGA-5R-AA1C-01 15 77907565 77907565 A T LINGO1 Missense_Mutation p.N228K 0.35 tolerated(0.07) benign(0.03) TCGA-5R-AA1C-01 16 10524480 10524480 G C ATF7IP2 Translation_Start_Site p.M1? 0.43 deleterious(0) probably_damaging(0.997) TCGA-5R-AA1C-01 16 49670990 49670990 G A ZNF423 Silent p.H691H 0.28 TCGA-5R-AA1C-01 17 12016647 12016648 AA - MAP2K4 Frame_Shift_Del p.D263Cfs*4 0.25 TCGA-5R-AA1C-01 17 1584082 1584082 C A PRPF8 Missense_Mutation p.D346Y 0.41 deleterious(0) possibly_damaging(0.839) TCGA-5R-AA1C-01 17 15903501 15903501 C T TTC19 Missense_Mutation p.A85V 0.11 tolerated(0.15) benign(0.075) TCGA-5R-AA1C-01 17 27849536 27849536 A T TAOK1 Missense_Mutation p.K716M 0.11 deleterious(0) probably_damaging(0.962) TCGA-5R-AA1C-01 17 3664786 3664786 G A ITGAE Missense_Mutation p.P115L 0.07 deleterious(0.04) benign(0.055) TCGA-5R-AA1C-01 17 40650998 40650998 G A ATP6V0A1 Missense_Mutation p.M546I 0.36 tolerated(0.16) benign(0.007) TCGA-5R-AA1C-01 17 67285417 67285417 A C ABCA5 Missense_Mutation p.D601E 0.45 tolerated(1) probably_damaging(0.991) TCGA-5R-AA1C-01 17 68172062 68172062 C A KCNJ2 Silent p.I294I 0.40 TCGA-5R-AA1C-01 17 7324444 7324444 C A SPEM1 Silent p.V150V 0.31 TCGA-5R-AA1C-01 18 11689826 11689826 G C GNAL Silent p.A88A 0.35 TCGA-5R-AA1C-01 18 28711904 28711904 G A DSC1 Intron 0.23 TCGA-5R-AA1C-01 19 1109536 1109536 C T SBNO2 Missense_Mutation p.G1062D 0.32 tolerated(0.09) benign(0.325) TCGA-5R-AA1C-01 19 13616903 13616903 T G CACNA1A Silent p.R46R 0.39 TCGA-5R-AA1C-01 19 42221465 42221465 G A CEACAM5 Silent p.Q350Q 0.35 TCGA-5R-AA1C-01 19 5244107 5244107 C A PTPRS Missense_Mutation p.G459C 0.35 deleterious(0) probably_damaging(1) TCGA-5R-AA1C-01 19 54726002 54726002 C A LILRB3 Missense_Mutation p.G119V 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-5R-AA1C-01 19 5832522 5832522 C A FUT6 Silent p.T19T 0.31 TCGA-5R-AA1C-01 1 110293318 110293318 G A EPS8L3 Silent p.I579I 0.04 TCGA-5R-AA1C-01 1 1385968 1385968 G A ATAD3C 5'UTR 0.33 TCGA-5R-AA1C-01 1 154842095 154842095 A T KCNN3 Missense_Mutation p.S116T 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.682) TCGA-5R-AA1C-01 1 154940971 154940971 C A SHC1 Missense_Mutation p.Q250H 0.66 deleterious(0) benign(0.051) TCGA-5R-AA1C-01 1 154962803 154962805 TTT - FLAD1 Intron 0.22 TCGA-5R-AA1C-01 1 159176208 159176208 T A DARC Missense_Mutation p.S329T 0.27 deleterious(0.01) possibly_damaging(0.893) TCGA-5R-AA1C-01 1 17298042 17298042 A T CROCC Missense_Mutation p.Q1956L 0.37 benign(0.002) TCGA-5R-AA1C-01 1 185986178 185986179 - C HMCN1 Frame_Shift_Ins p.G1760Rfs*17 0.30 TCGA-5R-AA1C-01 1 186281352 186281352 A G PRG4 Missense_Mutation p.K1280R 0.63 unknown(0) TCGA-5R-AA1C-01 1 20644146 20644146 C A VWA5B1 Silent p.I229I 0.22 TCGA-5R-AA1C-01 1 225965549 225965549 G T SRP9 5'UTR 0.20 TCGA-5R-AA1C-01 1 228476532 228476532 G C OBSCN Missense_Mutation p.G3857R 0.21 probably_damaging(1) TCGA-5R-AA1C-01 1 233113955 233113955 G A NTPCR Missense_Mutation p.C184Y 0.65 tolerated(0.44) benign(0.055) TCGA-5R-AA1C-01 1 24859580 24859580 T C RCAN3 Missense_Mutation p.M126T 0.38 tolerated(1) benign(0.001) TCGA-5R-AA1C-01 1 36029507 36029507 C A NCDN Missense_Mutation p.P584T 0.57 tolerated(0.05) benign(0.094) TCGA-5R-AA1C-01 1 43315395 43315395 G T ZNF691 Missense_Mutation p.M22I 0.37 tolerated_low_confidence(0.42) unknown(0) TCGA-5R-AA1C-01 1 55207251 55207251 C T TTC4 3'UTR 0.43 TCGA-5R-AA1C-01 1 59812016 59812017 - G FGGY Frame_Shift_Ins p.V140Gfs*25 0.28 TCGA-5R-AA1C-01 1 92182200 92182200 C T TGFBR3 Silent p.E544E 0.03 TCGA-5R-AA1C-01 20 20144770 20144770 T C C20orf26 Missense_Mutation p.L368P 0.37 tolerated(0.22) benign(0.033) TCGA-5R-AA1C-01 20 23583996 23583996 G A CST9 3'UTR 0.29 TCGA-5R-AA1C-01 20 31436722 31436722 A G MAPRE1 3'UTR 0.25 TCGA-5R-AA1C-01 20 43995750 43995750 G A SYS1 Missense_Mutation p.V156I 0.45 deleterious(0.04) benign(0.284) TCGA-5R-AA1C-01 20 47990403 47990403 A G KCNB1 Missense_Mutation p.I565T 0.35 tolerated_low_confidence(0.15) benign(0.131) TCGA-5R-AA1C-01 20 58521916 58521916 G T FAM217B 3'UTR 0.06 TCGA-5R-AA1C-01 21 30701998 30701998 C A BACH1 Nonsense_Mutation p.S587* 0.51 TCGA-5R-AA1C-01 21 34635391 34635391 C T IFNAR2 Silent p.P378P 0.64 TCGA-5R-AA1C-01 22 29196533 29196533 G A XBP1 5'UTR 0.50 TCGA-5R-AA1C-01 22 32009644 32009644 A G SFI1 Silent p.K933K 0.31 TCGA-5R-AA1C-01 2 10262771 10262797 AGCCAATGGGAAGGGCCGGGGCACCAA - RRM2 In_Frame_Del p.A16_G24del 0.22 TCGA-5R-AA1C-01 2 11317882 11317882 C T PQLC3 Silent p.I179I 0.54 TCGA-5R-AA1C-01 2 118854021 118854021 C A INSIG2 5'UTR 0.17 TCGA-5R-AA1C-01 2 165552233 165552233 T C COBLL1 Missense_Mutation p.M595V 0.28 tolerated(0.36) benign(0.001) TCGA-5R-AA1C-01 2 196681579 196681579 C A DNAH7 Missense_Mutation p.L3178F 0.26 deleterious(0) probably_damaging(0.998) TCGA-5R-AA1C-01 2 21266932 21266932 G A APOB 5'UTR 0.62 TCGA-5R-AA1C-01 2 228141161 228141161 C T COL4A3 Missense_Mutation p.P663L 0.55 unknown(0) TCGA-5R-AA1C-01 2 235949591 235949591 G T SH3BP4 Missense_Mutation p.V60L 0.57 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-5R-AA1C-01 2 27305559 27305559 G A EMILIN1 Missense_Mutation p.G374S 0.23 benign(0.039) TCGA-5R-AA1C-01 2 29498058 29498058 G T ALK Missense_Mutation p.P650T 0.58 tolerated(0.06) probably_damaging(0.948) TCGA-5R-AA1C-01 2 61244745 61244745 G T PEX13 5'Flank 0.50 TCGA-5R-AA1C-01 3 129017267 129017267 C T HMCES Missense_Mutation p.T175I 0.54 deleterious(0) probably_damaging(1) TCGA-5R-AA1C-01 3 129123132 129123132 A C EFCAB12 Missense_Mutation p.L455R 0.36 tolerated(0.36) benign(0.199) TCGA-5R-AA1C-01 3 132219701 132219701 A G DNAJC13 Missense_Mutation p.I1494V 0.54 deleterious(0.02) benign(0.196) TCGA-5R-AA1C-01 3 134670291 134670291 C T EPHB1 Nonsense_Mutation p.Q68* 0.04 TCGA-5R-AA1C-01 3 152882605 152882607 TCT - RAP2B 3'UTR 0.26 TCGA-5R-AA1C-01 3 186395586 186395586 C A HRG Missense_Mutation p.Q498K 0.27 deleterious(0) possibly_damaging(0.751) TCGA-5R-AA1C-01 3 37396591 37396591 G A GOLGA4 Splice_Site p.X2208_splice 0.23 TCGA-5R-AA1C-01 3 41266137 41266137 C A CTNNB1 Missense_Mutation p.S45Y 0.55 deleterious(0) probably_damaging(0.968) TCGA-5R-AA1C-01 3 45751119 45751119 G C SACM1L Missense_Mutation p.E155Q 0.20 tolerated(1) benign(0.017) TCGA-5R-AA1C-01 3 73433952 73433952 T G PDZRN3 Missense_Mutation p.N589H 0.27 tolerated(0.13) benign(0.017) TCGA-5R-AA1C-01 4 152570857 152570857 C T FAM160A1 Missense_Mutation p.P555L 0.40 tolerated(0.08) benign(0.001) TCGA-5R-AA1C-01 4 169931377 169931377 G A CBR4 5'UTR 0.24 TCGA-5R-AA1C-01 4 46067487 46067487 G T GABRG1 Missense_Mutation p.P146T 0.40 deleterious(0) probably_damaging(0.984) TCGA-5R-AA1C-01 4 5500781 5500781 C T STK32B Missense_Mutation p.H406Y 0.43 tolerated_low_confidence(0.08) benign(0.167) TCGA-5R-AA1C-01 4 661717 661717 G A PDE6B Missense_Mutation p.A809T 0.32 tolerated(0.33) benign(0.012) TCGA-5R-AA1C-01 4 78528986 78528986 T C CXCL13 Missense_Mutation p.I65T 0.14 deleterious(0) probably_damaging(0.936) TCGA-5R-AA1C-01 5 169412919 169412919 C T DOCK2 Nonsense_Mutation p.Q996* 0.30 TCGA-5R-AA1C-01 5 66492476 66492476 C T CD180 5'UTR 0.31 TCGA-5R-AA1C-01 5 73981154 73981154 G A HEXB Silent p.L23L 0.49 TCGA-5R-AA1C-01 5 74021934 74021934 A C GFM2 Missense_Mutation p.L582V 0.23 tolerated(0.45) benign(0.1) TCGA-5R-AA1C-01 6 106764056 106764058 CTC - ATG5 In_Frame_Del p.R9_D10delinsH 0.70 TCGA-5R-AA1C-01 6 152831461 152831461 T G SYNE1 Missense_Mutation p.S150R 0.67 benign(0.192) TCGA-5R-AA1C-01 6 27114964 27114964 T C HIST1H2AH Silent p.S19S 0.21 TCGA-5R-AA1C-01 6 29976079 29976079 G A ZNRD1-AS1 Intron 0.28 TCGA-5R-AA1C-01 6 31927872 31927872 T A SKIV2L Missense_Mutation p.L71Q 0.34 tolerated(0.1) benign(0.245) TCGA-5R-AA1C-01 6 35443156 35443156 T C TEAD3 Missense_Mutation p.K384R 0.41 tolerated(0.33) benign(0.004) TCGA-5R-AA1C-01 6 39282771 39282771 T C KCNK16 3'UTR 0.47 TCGA-5R-AA1C-01 6 43473578 43473578 C G TJAP1 Silent p.G553G 0.29 TCGA-5R-AA1C-01 6 50803851 50803851 G C TFAP2B Missense_Mutation p.G227R 0.06 tolerated(0.19) benign(0.302) TCGA-5R-AA1C-01 6 55120007 55120007 C T HCRTR2 Missense_Mutation p.P159L 0.53 deleterious(0) probably_damaging(1) TCGA-5R-AA1C-01 6 55300495 55300495 T A HMGCLL1 Missense_Mutation p.N360Y 0.27 deleterious(0.02) probably_damaging(0.954) TCGA-5R-AA1C-01 6 70071152 70071152 T C BAI3 Silent p.N1329N 0.47 TCGA-5R-AA1C-01 6 96661532 96661532 T A FUT9 3'UTR 0.72 TCGA-5R-AA1C-01 7 123673343 123673343 C - TMEM229A 5'UTR 0.21 TCGA-5R-AA1C-01 7 128494870 128494870 C T FLNC Silent p.L2347L 0.38 TCGA-5R-AA1C-01 7 135099083 135099083 A T CNOT4 Silent p.L186L 0.37 TCGA-5R-AA1C-01 7 149518154 149518154 C A SSPO RNA 0.30 TCGA-5R-AA1C-01 7 154876098 154876098 G C HTR5A Missense_Mutation p.W325C 0.39 deleterious(0.01) possibly_damaging(0.874) TCGA-5R-AA1C-01 7 31592634 31592634 C A CCDC129 Missense_Mutation p.S25Y 0.37 tolerated(0.09) benign(0.013) TCGA-5R-AA1C-01 7 94295947 94295947 T C PEG10 3'UTR 0.36 TCGA-5R-AA1C-01 7 99674980 99674980 T A ZNF3 Translation_Start_Site p.M1? 0.34 deleterious_low_confidence(0) possibly_damaging(0.651) TCGA-5R-AA1C-01 8 103855817 103855817 C A AZIN1 Nonsense_Mutation p.G22* 0.10 TCGA-5R-AA1C-01 8 141559371 141559371 A T AGO2 Missense_Mutation p.I477N 0.66 deleterious(0) possibly_damaging(0.844) TCGA-5R-AA1C-01 8 56015588 56015588 T A XKR4 Silent p.A180A 0.45 TCGA-5R-AA1C-01 8 94770709 94770709 A G TMEM67 Splice_Site p.X105_splice 0.57 TCGA-5R-AA1C-01 8 95550552 95550552 G A KIAA1429 Nonsense_Mutation p.Q68* 0.29 TCGA-5R-AA1C-01 8 99006729 99006729 C G MATN2 Missense_Mutation p.S368C 0.04 deleterious(0.05) possibly_damaging(0.617) TCGA-5R-AA1C-01 9 134952895 134952895 C A MED27 Silent p.L94L 0.60 TCGA-5R-AA1C-01 9 138380656 138380668 GCCCTGGGCCTGG - PPP1R26 3'UTR 0.36 TCGA-5R-AA1C-01 9 138606439 138606439 G A KCNT1 Missense_Mutation p.D43N 0.41 deleterious_low_confidence(0.05) benign(0) TCGA-5R-AA1C-01 9 40702772 40702772 A T SPATA31A3 Missense_Mutation p.E143D 0.29 tolerated(0.36) possibly_damaging(0.801) TCGA-5R-AA1C-01 9 5044434 5044434 A T JAK2 Missense_Mutation p.S128C 0.34 tolerated(0.05) benign(0.001) TCGA-5R-AA1C-01 9 5299936 5299936 C T RLN2 3'UTR 0.30 TCGA-5R-AA1C-01 X 132834048 132834048 C A GPC3 Missense_Mutation p.K370N 0.41 deleterious(0) possibly_damaging(0.542) TCGA-5R-AA1C-01 X 148037839 148037839 C T AFF2 Missense_Mutation p.T755I 0.43 tolerated(0.12) benign(0.241) TCGA-5R-AA1C-01 X 92928304 92928304 C A NAP1L3 5'UTR 0.41 TCGA-5R-AA1D-01 10 23481841 23481841 G T PTF1A Missense_Mutation p.G128W 0.09 deleterious(0) unknown(0) TCGA-5R-AA1D-01 11 18254009 18254009 A T SAA4 Missense_Mutation p.Y55N 0.18 deleterious(0) benign(0.339) TCGA-5R-AA1D-01 11 281192 281192 G T NLRP6 Silent p.P486P 0.17 TCGA-5R-AA1D-01 11 62435260 62435260 T C METTL12 3'UTR 0.14 TCGA-5R-AA1D-01 11 63753947 63753947 C T OTUB1 Nonsense_Mutation p.Q7* 0.11 TCGA-5R-AA1D-01 12 43748039 43748039 A G ADAMTS20 Silent p.T1902T 0.19 TCGA-5R-AA1D-01 12 56755172 56755172 G A APOF Missense_Mutation p.T273I 0.08 tolerated(0.2) benign(0.126) TCGA-5R-AA1D-01 14 100135258 100135258 G A HHIPL1 Intron 0.27 TCGA-5R-AA1D-01 14 24769729 24769729 G T NOP9 Silent p.P121P 0.07 TCGA-5R-AA1D-01 14 94780763 94780763 C G SERPINA6 Missense_Mutation p.A75P 0.04 deleterious(0) probably_damaging(0.996) TCGA-5R-AA1D-01 15 24921813 24921813 G A NPAP1 Missense_Mutation p.V267I 0.09 tolerated(0.16) benign(0.05) TCGA-5R-AA1D-01 15 31776670 31776670 G A OTUD7A Silent p.G536G 0.20 TCGA-5R-AA1D-01 16 30006907 30006907 A G HIRIP3 Missense_Mutation p.M7T 0.24 deleterious(0) benign(0.115) TCGA-5R-AA1D-01 17 57761270 57761270 G A CLTC Missense_Mutation p.R1453H 0.04 tolerated(0.55) possibly_damaging(0.811) TCGA-5R-AA1D-01 1 6662605 6662605 C T KLHL21 Silent p.L91L 0.19 TCGA-5R-AA1D-01 22 31795651 31795651 C T DRG1 5'UTR 0.24 TCGA-5R-AA1D-01 2 168100057 168100057 A C XIRP2 Silent p.R719R 0.03 TCGA-5R-AA1D-01 2 240066296 240066296 C T HDAC4 Missense_Mutation p.R283H 0.11 deleterious(0) possibly_damaging(0.88) TCGA-5R-AA1D-01 2 48982761 48982761 A T LHCGR Missense_Mutation p.L17Q 0.08 deleterious_low_confidence(0.02) unknown(0) TCGA-5R-AA1D-01 3 13921289 13921289 G C WNT7A Missense_Mutation p.L9V 0.16 tolerated(0.07) benign(0) TCGA-5R-AA1D-01 5 26885762 26885762 C T CDH9 Missense_Mutation p.A615T 0.18 deleterious(0.02) probably_damaging(0.989) TCGA-5R-AA1D-01 6 27840096 27840096 C A HIST1H3I 5'UTR 0.14 TCGA-5R-AA1D-01 7 95040997 95040997 A C PON2 Missense_Mutation p.H154Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-5R-AA1D-01 8 21839346 21839346 G A XPO7 Silent p.E354E 0.04 TCGA-5R-AA1D-01 X 153735650 153735650 C G FAM3A Missense_Mutation p.E161Q 0.13 deleterious(0.02) probably_damaging(0.97) TCGA-5R-AA1D-01 X 30237528 30237528 G A MAGEB2 Silent p.P277P 0.04 TCGA-5R-AA1D-01 X 34962585 34962585 T A FAM47B Missense_Mutation p.I546K 0.08 deleterious(0) benign(0.069) TCGA-5R-AAAM-01 10 114298012 114298012 A T VTI1A Missense_Mutation p.H117L 0.15 deleterious(0.02) benign(0.009) TCGA-5R-AAAM-01 10 28228827 28228827 T C ARMC4 Missense_Mutation p.Q699R 0.18 deleterious(0.02) benign(0.403) TCGA-5R-AAAM-01 11 117789435 117789435 G T TMPRSS13 Missense_Mutation p.A47D 0.05 deleterious_low_confidence(0.02) benign(0.082) TCGA-5R-AAAM-01 11 122929825 122929825 G T HSPA8 Missense_Mutation p.T422N 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.499) TCGA-5R-AAAM-01 11 20136228 20136228 C - NAV2 Frame_Shift_Del p.P2410Lfs*38 0.10 TCGA-5R-AAAM-01 11 43333649 43333649 G A API5 5'UTR 0.07 TCGA-5R-AAAM-01 11 55761610 55761610 G T OR5F1 Missense_Mutation p.S164R 0.26 deleterious(0.04) probably_damaging(0.949) TCGA-5R-AAAM-01 11 6655082 6655082 C A DCHS1 Missense_Mutation p.R719L 0.07 tolerated(0.23) benign(0.056) TCGA-5R-AAAM-01 12 25679068 25679068 C G IFLTD1 Missense_Mutation p.D255H 0.34 deleterious(0.04) probably_damaging(0.938) TCGA-5R-AAAM-01 12 45814873 45814873 C T ANO6 Missense_Mutation p.T767M 0.23 deleterious(0) probably_damaging(0.982) TCGA-5R-AAAM-01 12 5024540 5024540 C A KCNA1 3'UTR 0.07 TCGA-5R-AAAM-01 12 6143958 6143958 G A VWF Missense_Mutation p.H861Y 0.22 deleterious(0.03) possibly_damaging(0.634) TCGA-5R-AAAM-01 13 27830355 27830355 A C RPL21 Missense_Mutation p.I93L 0.19 deleterious(0.05) benign(0.026) TCGA-5R-AAAM-01 13 41240285 41240285 G C FOXO1 Missense_Mutation p.S22W 0.28 deleterious(0) probably_damaging(0.992) TCGA-5R-AAAM-01 13 99907439 99907439 A G GPR18 Missense_Mutation p.S230P 0.04 tolerated(0.15) possibly_damaging(0.887) TCGA-5R-AAAM-01 14 106303262 106303262 G T IGHD 3'UTR 0.17 TCGA-5R-AAAM-01 14 21250306 21250306 C G RNASE6 Missense_Mutation p.L150V 0.28 tolerated(1) benign(0) TCGA-5R-AAAM-01 14 73729359 73729404 AAAGCCCTGGCCTTCTGGTGGTCTCTGGCGGCAAGACCAACAGCCT - PAPLN Frame_Shift_Del p.K823Gfs*99 0.16 TCGA-5R-AAAM-01 15 23811290 23811290 C G MKRN3 Missense_Mutation p.L121V 0.10 deleterious(0.01) possibly_damaging(0.53) TCGA-5R-AAAM-01 15 52635319 52635319 G A MYO5A Silent p.A1345A 0.13 TCGA-5R-AAAM-01 16 739720 739720 C A WDR24 5'UTR 0.36 TCGA-5R-AAAM-01 16 84778402 84778402 T C USP10 Silent p.T105T 0.30 TCGA-5R-AAAM-01 17 33267596 33267596 T G CCT6B Silent p.I310I 0.07 TCGA-5R-AAAM-01 17 34182344 34182344 A G C17orf66 Missense_Mutation p.L479P 0.25 deleterious(0) possibly_damaging(0.804) TCGA-5R-AAAM-01 17 5076333 5076333 T C USP6 3'UTR 0.19 TCGA-5R-AAAM-01 17 7290430 7290430 G T TNK1 Missense_Mutation p.G457C 0.05 deleterious(0.01) possibly_damaging(0.606) TCGA-5R-AAAM-01 17 74936836 74936836 C T MGAT5B Missense_Mutation p.A594V 0.27 deleterious(0.04) benign(0.049) TCGA-5R-AAAM-01 18 8796353 8796353 C T SOGA2 Missense_Mutation p.R712W 0.05 deleterious(0) probably_damaging(0.954) TCGA-5R-AAAM-01 19 2476227 2476227 G T GADD45B 5'UTR 0.14 TCGA-5R-AAAM-01 19 36222961 36222961 C T KMT2B Nonsense_Mutation p.R1864* 0.25 TCGA-5R-AAAM-01 19 36606362 36606362 G C TBCB 5'UTR 0.24 TCGA-5R-AAAM-01 19 39435635 39435635 G A CTC-360G5.8 Nonsense_Mutation p.Q128* 0.08 TCGA-5R-AAAM-01 19 43766112 43766112 A T PSG9 Nonsense_Mutation p.Y203* 0.23 TCGA-5R-AAAM-01 19 44096253 44096253 G A IRGQ Silent p.G599G 0.11 TCGA-5R-AAAM-01 19 51480743 51480743 C G KLK7 3'UTR 0.10 TCGA-5R-AAAM-01 19 57175395 57175395 C T ZNF835 Missense_Mutation p.R391K 0.16 tolerated(0.61) benign(0) TCGA-5R-AAAM-01 19 7119538 7119538 C T INSR Missense_Mutation p.G1239D 0.15 deleterious(0) probably_damaging(1) TCGA-5R-AAAM-01 1 111854972 111854972 T G CHIA Missense_Mutation p.N72K 0.15 deleterious(0.05) benign(0.256) TCGA-5R-AAAM-01 1 151258832 151258832 A G ZNF687 Missense_Mutation p.D22G 0.16 deleterious(0) probably_damaging(0.991) TCGA-5R-AAAM-01 1 158299379 158299379 C T CD1B Missense_Mutation p.V223M 0.05 deleterious(0) probably_damaging(0.996) TCGA-5R-AAAM-01 1 158585118 158585118 C T SPTA1 Missense_Mutation p.A2226T 0.12 tolerated(0.46) probably_damaging(1) TCGA-5R-AAAM-01 1 158646060 158646060 T C SPTA1 Missense_Mutation p.E328G 0.05 tolerated(0.07) benign(0.217) TCGA-5R-AAAM-01 1 160128807 160128807 C A ATP1A4 Silent p.R181R 0.37 TCGA-5R-AAAM-01 1 16464471 16464471 C T EPHA2 Missense_Mutation p.V397M 0.13 deleterious(0.01) possibly_damaging(0.822) TCGA-5R-AAAM-01 1 166896403 166896403 G A ILDR2 Missense_Mutation p.R299W 0.06 deleterious(0) probably_damaging(0.999) TCGA-5R-AAAM-01 1 169391306 169391306 C G CCDC181 Missense_Mutation p.E121D 0.09 deleterious(0.02) benign(0.333) TCGA-5R-AAAM-01 1 200008803 200008803 C T NR5A2 Nonsense_Mutation p.R28* 0.27 TCGA-5R-AAAM-01 1 215848027 215848027 G A USH2A Missense_Mutation p.S4409F 0.30 probably_damaging(0.949) TCGA-5R-AAAM-01 1 224927132 224927132 A T CNIH3 3'UTR 0.04 TCGA-5R-AAAM-01 1 227222368 227222369 - C CDC42BPA Frame_Shift_Ins p.V1120Gfs*3 0.26 TCGA-5R-AAAM-01 1 62232108 62232108 A G INADL Missense_Mutation p.N116S 0.29 tolerated(0.67) benign(0.006) TCGA-5R-AAAM-01 1 75596462 75596462 T C LHX8 Intron 0.10 TCGA-5R-AAAM-01 1 78162761 78162761 T A USP33 3'UTR 0.21 TCGA-5R-AAAM-01 20 19998679 19998679 A G NAA20 Intron 0.05 TCGA-5R-AAAM-01 20 30510825 30510825 G A TTLL9 Silent p.Q211Q 0.06 TCGA-5R-AAAM-01 20 53260003 53260003 A G DOK5 Missense_Mutation p.M248V 0.09 tolerated_low_confidence(0.67) benign(0.001) TCGA-5R-AAAM-01 20 57876550 57876550 T C EDN3 Silent p.C46C 0.13 TCGA-5R-AAAM-01 22 22314746 22314746 C T TOP3B Missense_Mutation p.R534Q 0.15 deleterious(0.03) benign(0.327) TCGA-5R-AAAM-01 22 31685037 31685037 T C PIK3IP1 Intron 0.18 TCGA-5R-AAAM-01 22 38038931 38038931 A G SH3BP1 Missense_Mutation p.Q105R 0.07 deleterious(0) probably_damaging(0.911) TCGA-5R-AAAM-01 22 38073068 38073068 A G LGALS1 Missense_Mutation p.K29E 0.05 tolerated(0.06) possibly_damaging(0.468) TCGA-5R-AAAM-01 22 42610966 42610966 G A TCF20 Nonsense_Mutation p.Q116* 0.41 TCGA-5R-AAAM-01 22 42610967 42610967 C A TCF20 Silent p.V115V 0.40 TCGA-5R-AAAM-01 2 12858376 12858376 C G TRIB2 5'UTR 0.36 TCGA-5R-AAAM-01 2 178098806 178098806 G A NFE2L2 Missense_Mutation p.T80I 0.31 deleterious(0) probably_damaging(1) TCGA-5R-AAAM-01 2 179436587 179436587 G A TTN Nonsense_Mutation p.Q24758* 0.32 TCGA-5R-AAAM-01 2 223086027 223086027 G T PAX3 Missense_Mutation p.P291H 0.16 deleterious(0) possibly_damaging(0.853) TCGA-5R-AAAM-01 2 234173607 234173607 T C ATG16L1 Silent p.C153C 0.13 TCGA-5R-AAAM-01 2 241979571 241979571 C T SNED1 Silent p.C375C 0.06 TCGA-5R-AAAM-01 2 32750591 32750591 G A BIRC6 Missense_Mutation p.R3939K 0.05 probably_damaging(0.968) TCGA-5R-AAAM-01 2 89278144 89278144 G A IGKV3-7 Missense_Mutation p.A64V 0.29 tolerated(0.07) benign(0.086) TCGA-5R-AAAM-01 2 97357320 97357320 G A FER1L5 RNA 0.12 TCGA-5R-AAAM-01 3 128889414 128889414 C T CNBP Splice_Site p.X141_splice 0.12 TCGA-5R-AAAM-01 3 132419256 132419256 C A NPHP3 Silent p.L555L 0.06 TCGA-5R-AAAM-01 3 133114878 133114881 ATAA - TMEM108 3'UTR 0.12 TCGA-5R-AAAM-01 3 152555153 152555153 A G P2RY1 3'UTR 0.07 TCGA-5R-AAAM-01 3 153220256 153220256 T C C3orf79 Silent p.D96D 0.12 TCGA-5R-AAAM-01 3 195029516 195029516 T A ACAP2 Missense_Mutation p.K303M 0.08 deleterious(0.01) possibly_damaging(0.858) TCGA-5R-AAAM-01 3 439917 439917 T A CHL1 Silent p.G1034G 0.07 TCGA-5R-AAAM-01 3 44362676 44362676 T C TOPAZ1 Silent p.N1488N 0.28 TCGA-5R-AAAM-01 3 49152738 49152738 G T USP19 Missense_Mutation p.L647M 0.04 deleterious(0) probably_damaging(0.936) TCGA-5R-AAAM-01 3 6903173 6903173 G A GRM7 Missense_Mutation p.R33H 0.11 tolerated(0.13) benign(0) TCGA-5R-AAAM-01 4 106160052 106160052 A G TET2 Intron 0.14 TCGA-5R-AAAM-01 4 113460679 113460679 A T C4orf21 3'UTR 0.06 TCGA-5R-AAAM-01 4 119653989 119653989 G C SEC24D Missense_Mutation p.P859A 0.30 tolerated(0.87) benign(0.004) TCGA-5R-AAAM-01 4 128651788 128651788 G A SLC25A31 Missense_Mutation p.A30T 0.20 deleterious(0.02) possibly_damaging(0.892) TCGA-5R-AAAM-01 4 155487708 155487708 A G FGB Missense_Mutation p.N125S 0.15 tolerated(0.46) benign(0.001) TCGA-5R-AAAM-01 4 39229946 39229946 C T WDR19 Silent p.Y582Y 0.13 TCGA-5R-AAAM-01 4 71063815 71063815 G T ODAM Missense_Mutation p.G106C 0.07 deleterious(0.04) possibly_damaging(0.685) TCGA-5R-AAAM-01 5 140532159 140532159 C T PCDHB6 Missense_Mutation p.P774L 0.13 tolerated_low_confidence(0.55) benign(0.007) TCGA-5R-AAAM-01 5 140731361 140731361 G A PCDHGB1 Missense_Mutation p.A512T 0.08 deleterious(0) probably_damaging(1) TCGA-5R-AAAM-01 5 140745675 140745675 C A PCDHGA5 Missense_Mutation p.A593E 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-5R-AAAM-01 5 156819926 156819926 C A CYFIP2 Missense_Mutation p.S1201Y 0.18 tolerated(0.44) benign(0.013) TCGA-5R-AAAM-01 5 40852639 40852639 A C CARD6 Missense_Mutation p.Q402P 0.31 deleterious(0.03) possibly_damaging(0.883) TCGA-5R-AAAM-01 5 41912232 41912232 T G C5orf51 Nonsense_Mutation p.L183* 0.12 TCGA-5R-AAAM-01 5 6753104 6753104 C A PAPD7 Missense_Mutation p.P463H 0.06 tolerated_low_confidence(0.09) possibly_damaging(0.503) TCGA-5R-AAAM-01 5 76722294 76722294 T A PDE8B Missense_Mutation p.M858K 0.04 deleterious(0) possibly_damaging(0.75) TCGA-5R-AAAM-01 6 123658784 123658784 G A TRDN Missense_Mutation p.S467F 0.17 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-5R-AAAM-01 6 147123924 147123924 A C ADGB Intron 0.15 TCGA-5R-AAAM-01 6 27858205 27858205 A C HIST1H3J Silent p.P122P 0.35 TCGA-5R-AAAM-01 6 51491853 51491853 G C PKHD1 Missense_Mutation p.I3909M 0.39 tolerated(0.11) benign(0.009) TCGA-5R-AAAM-01 6 93967865 93967865 G A EPHA7 Nonsense_Mutation p.Q688* 0.36 TCGA-5R-AAAM-01 7 12409710 12409710 T C VWDE Missense_Mutation p.E741G 0.25 tolerated(0.11) benign(0.07) TCGA-5R-AAAM-01 7 127361444 127361444 A G SND1 Missense_Mutation p.E381G 0.06 tolerated(0.14) benign(0.003) TCGA-5R-AAAM-01 7 149501107 149501107 C T SSPO RNA 0.04 TCGA-5R-AAAM-01 7 150417974 150417974 G T GIMAP1 Missense_Mutation p.R294S 0.32 deleterious(0.04) benign(0.151) TCGA-5R-AAAM-01 7 150746378 150746378 C T ASIC3 Missense_Mutation p.P136S 0.17 tolerated(0.32) benign(0.228) TCGA-5R-AAAM-01 7 40174633 40174633 T A SUGCT Missense_Mutation p.L12Q 0.15 deleterious(0.04) possibly_damaging(0.883) TCGA-5R-AAAM-01 7 42949520 42949520 G A C7orf25 Missense_Mutation p.A385V 0.08 deleterious(0) probably_damaging(0.983) TCGA-5R-AAAM-01 8 100287443 100287443 A G VPS13B Missense_Mutation p.I929V 0.09 tolerated(1) benign(0) TCGA-5R-AAAM-01 8 113655802 113655802 T C CSMD3 Intron 0.09 TCGA-5R-AAAM-01 8 120575128 120575128 G C ENPP2 Missense_Mutation p.P849R 0.45 deleterious(0) probably_damaging(0.997) TCGA-5R-AAAM-01 8 29940360 29940360 C A TMEM66 Intron 0.18 TCGA-5R-AAAM-01 8 37603149 37603149 A G ERLIN2 Intron 0.18 TCGA-5R-AAAM-01 8 67478976 67478976 A G MYBL1 Silent p.N631N 0.39 TCGA-5R-AAAM-01 8 70674091 70674091 T A SLCO5A1 Silent p.G309G 0.21 TCGA-5R-AAAM-01 8 72959441 72959441 A T TRPA1 Missense_Mutation p.V636E 0.02 tolerated(0.27) possibly_damaging(0.475) TCGA-5R-AAAM-01 9 117853261 117853261 G T TNC Missense_Mutation p.L13I 0.19 tolerated(0.16) benign(0.007) TCGA-5R-AAAM-01 9 128070380 128070380 A G GAPVD1 Intron 0.12 TCGA-5R-AAAM-01 9 131709850 131709850 G A DOLK 5'UTR 0.10 TCGA-5R-AAAM-01 9 84549365 84549365 G A RP11-383M4.6 Intron 0.25 TCGA-5R-AAAM-01 9 94493238 94493238 C T ROR2 Silent p.T379T 0.23 TCGA-5R-AAAM-01 X 114357372 114357372 T C LRCH2 Missense_Mutation p.H684R 0.11 deleterious(0) probably_damaging(0.941) TCGA-5R-AAAM-01 X 123514879 123514879 T C TENM1 Missense_Mutation p.N2569S 0.06 tolerated(0.17) benign(0.017) TCGA-5R-AAAM-01 X 138882218 138882218 C G ATP11C Splice_Site p.X240_splice 0.03 TCGA-5R-AAAM-01 X 153689565 153689565 C T PLXNA3 Silent p.L241L 0.13 TCGA-5R-AAAM-01 X 17743756 17743756 A G NHS Silent p.E489E 0.11 TCGA-5R-AAAM-01 X 49065046 49065046 G A CACNA1F Silent p.P1695P 0.13 TCGA-5R-AAAM-01 X 79971674 79971674 T C BRWD3 Silent p.P769P 0.10 TCGA-5R-AAAM-01 X 99943335 99943335 T C SYTL4 Intron 0.09 TCGA-BC-4073-01 10 1034457 1034457 C T GTPBP4 Missense_Mutation p.P13L 0.33 deleterious(0) possibly_damaging(0.893) TCGA-BC-4073-01 10 14938885 14938885 A C SUV39H2 Missense_Mutation p.D73A 0.16 tolerated(0.24) benign(0.13) TCGA-BC-4073-01 10 27702131 27702131 A G PTCHD3 Missense_Mutation p.F350S 0.29 tolerated(0.07) benign(0.043) TCGA-BC-4073-01 10 3150974 3150974 G A PFKP Missense_Mutation p.D318N 0.26 deleterious(0) probably_damaging(1) TCGA-BC-4073-01 10 3824157 3824157 C A KLF6 Nonsense_Mutation p.E118* 0.29 TCGA-BC-4073-01 10 51464927 51464927 G A AGAP7 Missense_Mutation p.S510L 0.19 tolerated(0.45) benign(0.005) TCGA-BC-4073-01 10 61592392 61592392 T A CCDC6 Missense_Mutation p.E158V 0.25 deleterious(0.04) possibly_damaging(0.582) TCGA-BC-4073-01 10 64967201 64967201 T C JMJD1C Missense_Mutation p.S1410G 0.25 tolerated_low_confidence(0.25) benign(0.15) TCGA-BC-4073-01 10 64967202 64967202 G T JMJD1C Silent p.S1409S 0.26 TCGA-BC-4073-01 10 7423775 7423775 C T SFMBT2 Missense_Mutation p.G29E 0.25 tolerated(0.36) benign(0.075) TCGA-BC-4073-01 11 104776232 104776232 G T RP11-693N9.2 RNA 0.26 TCGA-BC-4073-01 11 1078363 1078363 C A MUC2 Missense_Mutation p.S217Y 0.35 probably_damaging(0.949) TCGA-BC-4073-01 11 1078364 1078364 C T MUC2 Silent p.S217S 0.35 TCGA-BC-4073-01 11 111855960 111855962 TAC - DIXDC1 In_Frame_Del p.L309del 0.39 TCGA-BC-4073-01 11 120831700 120831700 A T GRIK4 Missense_Mutation p.I653F 0.30 deleterious(0) probably_damaging(0.996) TCGA-BC-4073-01 11 1652019 1652019 G T KRTAP5-5 3'UTR 0.30 TCGA-BC-4073-01 11 17430046 17430046 C A ABCC8 Missense_Mutation p.G905C 0.12 tolerated(0.06) probably_damaging(1) TCGA-BC-4073-01 11 46726585 46726585 C T ZNF408 Silent p.A445A 0.22 TCGA-BC-4073-01 11 4944842 4944842 C A OR51G1 Missense_Mutation p.C243F 0.18 deleterious(0) probably_damaging(0.996) TCGA-BC-4073-01 11 57970715 57970715 G A OR1S2 Silent p.A313A 0.26 TCGA-BC-4073-01 11 58477428 58477428 C G GLYAT Missense_Mutation p.L234F 0.19 tolerated(0.06) possibly_damaging(0.836) TCGA-BC-4073-01 11 6245606 6245606 T C FAM160A2 Intron 0.22 TCGA-BC-4073-01 11 63992051 63992051 C A TRPT1 Missense_Mutation p.A158S 0.17 tolerated(0.08) possibly_damaging(0.562) TCGA-BC-4073-01 11 64695804 64695804 G A PPP2R5B Missense_Mutation p.R210H 0.23 deleterious(0) probably_damaging(0.992) TCGA-BC-4073-01 11 71948271 71948271 C T INPPL1 Nonsense_Mutation p.Q995* 0.24 TCGA-BC-4073-01 12 105509006 105509006 A T KIAA1033 Silent p.G122G 0.19 TCGA-BC-4073-01 12 107386611 107386611 T G CRY1 Missense_Mutation p.D572A 0.35 tolerated_low_confidence(0.36) benign(0.002) TCGA-BC-4073-01 12 110959986 110959986 G A RAD9B Missense_Mutation p.D299N 0.25 tolerated(0.18) benign(0.056) TCGA-BC-4073-01 12 14774139 14774139 G T GUCY2C Silent p.I871I 0.30 TCGA-BC-4073-01 12 52374781 52374781 G T ACVR1B Silent p.V203V 0.28 TCGA-BC-4073-01 12 52374782 52374782 G T ACVR1B Missense_Mutation p.A204S 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-BC-4073-01 12 85450424 85450424 C T LRRIQ1 Missense_Mutation p.S618L 0.19 tolerated(1) benign(0) TCGA-BC-4073-01 13 103701772 103701772 C T SLC10A2 Silent p.T262T 0.25 TCGA-BC-4073-01 13 66878891 66878891 G A PCDH9 Missense_Mutation p.H1204Y 0.23 tolerated(0.07) benign(0.043) TCGA-BC-4073-01 13 67800949 67800949 C T PCDH9 Missense_Mutation p.V542I 0.29 tolerated(0.06) benign(0.437) TCGA-BC-4073-01 14 104040498 104040498 A G RP11-73M18.2 Missense_Mutation p.T139A 0.25 tolerated_low_confidence(0.57) benign(0) TCGA-BC-4073-01 14 106471501 106471501 C A IGHV1-3 Missense_Mutation p.K32N 0.21 deleterious(0.02) benign(0.246) TCGA-BC-4073-01 14 23816360 23816360 G A SLC22A17 Silent p.A426A 0.36 TCGA-BC-4073-01 14 33293092 33293092 A G AKAP6 Missense_Mutation p.N2025D 0.21 tolerated(0.06) benign(0.146) TCGA-BC-4073-01 14 52741702 52741702 G T PTGDR 3'UTR 0.19 TCGA-BC-4073-01 14 59965466 59965466 T G JKAMP Nonsense_Mutation p.Y160* 0.26 TCGA-BC-4073-01 14 74189521 74189521 C T ELMSAN1 Silent p.V868V 0.32 TCGA-BC-4073-01 14 90764607 90764607 G T NRDE2 Missense_Mutation p.P555T 0.21 tolerated(0.12) benign(0.026) TCGA-BC-4073-01 15 27222146 27222146 C A GABRG3 Intron 0.31 TCGA-BC-4073-01 15 33025014 33025014 G T GREM1 3'UTR 0.29 TCGA-BC-4073-01 15 33359250 33359250 C A FMN1 Missense_Mutation p.G279V 0.20 deleterious(0) unknown(0) TCGA-BC-4073-01 15 49048388 49048388 A G CEP152 Silent p.C1019C 0.26 TCGA-BC-4073-01 15 91017734 91017734 C T IQGAP1 Missense_Mutation p.P865S 0.28 tolerated(0.06) possibly_damaging(0.618) TCGA-BC-4073-01 16 22149760 22149760 A G VWA3A Missense_Mutation p.K740R 0.39 tolerated(0.12) benign(0.062) TCGA-BC-4073-01 16 31004051 31004051 C T STX1B 3'UTR 0.29 TCGA-BC-4073-01 16 65038672 65038672 G A CDH11 Missense_Mutation p.S34F 0.24 tolerated(0.11) benign(0.166) TCGA-BC-4073-01 16 71606499 71606499 A G TAT Silent p.P167P 0.24 TCGA-BC-4073-01 16 88500166 88500166 G A ZNF469 Silent p.L2068L 0.35 TCGA-BC-4073-01 17 17719659 17719659 G A SREBF1 Silent p.A722A 0.57 TCGA-BC-4073-01 17 19645392 19645392 G C ALDH3A1 Missense_Mutation p.T205S 0.25 deleterious(0) possibly_damaging(0.903) TCGA-BC-4073-01 17 20354888 20354888 G C LGALS9B Missense_Mutation p.A276G 0.31 tolerated(0.09) benign(0.224) TCGA-BC-4073-01 17 25967778 25967778 G T LGALS9 Silent p.L104L 0.20 TCGA-BC-4073-01 17 55187484 55187484 G T AKAP1 Missense_Mutation p.V605F 0.30 deleterious(0.04) possibly_damaging(0.885) TCGA-BC-4073-01 17 56423594 56423594 G A SUPT4H1 3'UTR 0.16 TCGA-BC-4073-01 17 65026740 65026740 G T CACNG4 Missense_Mutation p.A202S 0.36 tolerated(0.16) probably_damaging(0.967) TCGA-BC-4073-01 17 73919636 73919636 G C FBF1 Missense_Mutation p.P337R 0.22 tolerated(0.16) benign(0.14) TCGA-BC-4073-01 18 14850260 14850260 T C ANKRD30B Missense_Mutation p.L1029S 0.23 deleterious(0) probably_damaging(0.986) TCGA-BC-4073-01 18 29470774 29470774 T C TRAPPC8 Missense_Mutation p.N551S 0.26 tolerated(0.09) benign(0.223) TCGA-BC-4073-01 18 47800056 47800056 C A MBD1 Nonsense_Mutation p.E442* 0.28 TCGA-BC-4073-01 19 10166314 10166314 G T C3P1 RNA 0.27 TCGA-BC-4073-01 19 12776599 12776599 C G MAN2B1 Silent p.P60P 0.32 TCGA-BC-4073-01 19 31048073 31048073 A T ZNF536 3'UTR 0.25 TCGA-BC-4073-01 19 3474916 3474916 T G C19orf77 Silent p.G106G 0.29 TCGA-BC-4073-01 19 52327451 52327451 G C FPR3 Missense_Mutation p.W150C 0.07 deleterious(0) probably_damaging(1) TCGA-BC-4073-01 19 53304147 53304147 A T ZNF28 Missense_Mutation p.H317Q 0.24 deleterious(0) benign(0) TCGA-BC-4073-01 19 5653399 5653399 C T SAFB Silent p.D498D 0.29 TCGA-BC-4073-01 19 6670048 6670048 A G TNFSF14 Silent p.F11F 0.29 TCGA-BC-4073-01 19 6677844 6677844 C A C3 3'UTR 0.28 TCGA-BC-4073-01 19 8038704 8038704 C A ELAVL1 Missense_Mutation p.G112V 0.31 deleterious(0) probably_damaging(1) TCGA-BC-4073-01 19 9801514 9801514 T C ZNF812 Missense_Mutation p.K222R 0.27 tolerated(0.1) benign(0.345) TCGA-BC-4073-01 1 110279601 110279601 A G GSTM3 3'UTR 0.35 TCGA-BC-4073-01 1 117158700 117158700 A T IGSF3 Splice_Site p.X141_splice 0.23 TCGA-BC-4073-01 1 117699311 117699311 A G VTCN1 Silent p.V110V 0.30 TCGA-BC-4073-01 1 1190842 1190842 T A UBE2J2 Missense_Mutation p.Q190L 0.27 tolerated(0.09) benign(0.097) TCGA-BC-4073-01 1 153279733 153279733 G A PGLYRP3 Silent p.T22T 0.38 TCGA-BC-4073-01 1 162337003 162337003 G T NOS1AP Missense_Mutation p.D423Y 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.577) TCGA-BC-4073-01 1 17402191 17402191 G A PADI2 Missense_Mutation p.P480S 0.36 deleterious(0) possibly_damaging(0.687) TCGA-BC-4073-01 1 17740138 17740138 T C RCC2 Missense_Mutation p.K368E 0.25 deleterious(0) possibly_damaging(0.589) TCGA-BC-4073-01 1 200973575 200973575 C A KIF21B Missense_Mutation p.L303F 0.23 deleterious(0) probably_damaging(0.996) TCGA-BC-4073-01 1 203816541 203816541 A C ZC3H11A Missense_Mutation p.K424N 0.22 deleterious(0.01) benign(0.105) TCGA-BC-4073-01 1 215916665 215916665 G A USH2A Missense_Mutation p.P3801L 0.20 benign(0.055) TCGA-BC-4073-01 1 216062251 216062251 T A USH2A Silent p.G2580G 0.28 TCGA-BC-4073-01 1 227316906 227316908 GCA - CDC42BPA In_Frame_Del p.L472del 0.28 TCGA-BC-4073-01 1 237923107 237923107 A C RYR2 Missense_Mutation p.D3786A 0.25 benign(0.26) TCGA-BC-4073-01 1 247582364 247582364 G T NLRP3 Missense_Mutation p.D90Y 0.50 deleterious(0) possibly_damaging(0.77) TCGA-BC-4073-01 1 32151294 32151294 T G COL16A1 Silent p.P654P 0.22 TCGA-BC-4073-01 1 45480057 45480057 G C UROD Intron 0.32 TCGA-BC-4073-01 1 6279537 6279537 G T RNF207 3'UTR 0.21 TCGA-BC-4073-01 1 86916353 86916353 A T CLCA2 Missense_Mutation p.S698C 0.11 deleterious(0.01) benign(0.376) TCGA-BC-4073-01 20 20571891 20571891 C T RALGAPA2 Silent p.Q757Q 0.26 TCGA-BC-4073-01 20 30432921 30432921 C G FOXS1 Missense_Mutation p.G142A 0.38 tolerated(0.24) benign(0.247) TCGA-BC-4073-01 20 32298387 32298387 C A PXMP4 Nonsense_Mutation p.G117* 0.24 TCGA-BC-4073-01 20 36147307 36147307 A G BLCAP 3'UTR 0.20 TCGA-BC-4073-01 20 50092056 50092056 T G NFATC2 Missense_Mutation p.I492L 0.25 tolerated(0.17) benign(0.07) TCGA-BC-4073-01 21 32201797 32201797 T G KRTAP7-1 RNA 0.24 TCGA-BC-4073-01 21 35172168 35172168 G A ITSN1 Missense_Mutation p.A747T 0.26 deleterious(0) probably_damaging(0.999) TCGA-BC-4073-01 22 24494153 24494153 A G CABIN1 Missense_Mutation p.D1372G 0.12 tolerated(0.12) benign(0.001) TCGA-BC-4073-01 22 30742471 30742471 C T SF3A1 Missense_Mutation p.E75K 0.25 deleterious(0) probably_damaging(0.974) TCGA-BC-4073-01 22 38643832 38643832 C A TMEM184B Missense_Mutation p.A46S 0.22 deleterious(0.04) possibly_damaging(0.889) TCGA-BC-4073-01 22 38823337 38823337 C A KCNJ4 Missense_Mutation p.E267D 0.37 tolerated(0.09) benign(0.008) TCGA-BC-4073-01 22 46829366 46829366 G A CELSR1 Missense_Mutation p.T1512M 0.24 deleterious(0) probably_damaging(1) TCGA-BC-4073-01 22 50655246 50655246 T G SELO Missense_Mutation p.S543R 0.39 tolerated(0.07) possibly_damaging(0.673) TCGA-BC-4073-01 2 137928399 137928399 G T THSD7B Missense_Mutation p.E538D 0.31 tolerated(0.24) benign(0.388) TCGA-BC-4073-01 2 137928400 137928400 G T THSD7B Missense_Mutation p.D539Y 0.30 deleterious(0) probably_damaging(0.934) TCGA-BC-4073-01 2 160665051 160665051 A T LY75-CD302 Missense_Mutation p.D1577E 0.28 tolerated(0.07) benign(0.012) TCGA-BC-4073-01 2 172604523 172604523 T C DYNC1I2 3'UTR 0.19 TCGA-BC-4073-01 2 179325171 179325171 G C DFNB59 Missense_Mutation p.R255T 0.18 tolerated(0.35) benign(0.089) TCGA-BC-4073-01 2 190617632 190617632 C T OSGEPL1 Missense_Mutation p.C346Y 0.23 tolerated(1) benign(0.026) TCGA-BC-4073-01 2 190718971 190718971 G A PMS1 Missense_Mutation p.V325I 0.21 tolerated(0.17) benign(0.074) TCGA-BC-4073-01 2 220379823 220379823 C A ASIC4 Nonsense_Mutation p.S253* 0.23 TCGA-BC-4073-01 2 231176178 231176178 G A SP140 Silent p.A791A 0.12 TCGA-BC-4073-01 2 234681251 234681251 A G UGT1A4 3'UTR 0.27 TCGA-BC-4073-01 2 23785124 23785124 G A KLHL29 Missense_Mutation p.E20K 0.28 deleterious_low_confidence(0.01) benign(0.124) TCGA-BC-4073-01 2 27552031 27552031 G C GTF3C2 Missense_Mutation p.P666A 0.26 tolerated(0.16) benign(0.093) TCGA-BC-4073-01 2 27590024 27590024 C T EIF2B4 Silent p.E330E 0.27 TCGA-BC-4073-01 2 33810097 33810097 T C FAM98A Missense_Mutation p.S435G 0.27 tolerated_low_confidence(0.2) unknown(0) TCGA-BC-4073-01 2 40656603 40656603 C A SLC8A1 Missense_Mutation p.G273V 0.33 deleterious(0) probably_damaging(0.964) TCGA-BC-4073-01 2 5835852 5835852 G T SOX11 3'UTR 0.34 TCGA-BC-4073-01 2 5837767 5837767 G T SOX11 3'UTR 0.34 TCGA-BC-4073-01 2 77745674 77745674 A G LRRTM4 Silent p.L441L 0.33 TCGA-BC-4073-01 2 89521221 89521221 C T IGKV2-28 Silent p.E106E 0.20 TCGA-BC-4073-01 3 12544973 12544973 A T TSEN2 Missense_Mutation p.N174I 0.31 deleterious(0.01) possibly_damaging(0.474) TCGA-BC-4073-01 3 134920367 134920367 A T EPHB1 Missense_Mutation p.I728F 0.22 deleterious(0.01) probably_damaging(0.985) TCGA-BC-4073-01 3 151545693 151545693 T G AADAC Nonsense_Mutation p.Y311* 0.31 TCGA-BC-4073-01 3 152553878 152553878 A C P2RY1 Missense_Mutation p.T103P 0.26 deleterious(0) possibly_damaging(0.697) TCGA-BC-4073-01 3 180326742 180326742 G T TTC14 Intron 0.26 TCGA-BC-4073-01 3 185993350 185993350 C T DGKG Missense_Mutation p.G299D 0.35 deleterious(0) probably_damaging(1) TCGA-BC-4073-01 3 29781252 29781252 C G RBMS3 Silent p.L147L 0.19 TCGA-BC-4073-01 3 38645329 38645329 A G SCN5A Silent p.H588H 0.35 TCGA-BC-4073-01 3 42577594 42577594 C T VIPR1 Silent p.L399L 0.25 TCGA-BC-4073-01 3 45748365 45748365 A G SACM1L Missense_Mutation p.Y100C 0.26 deleterious(0) probably_damaging(0.99) TCGA-BC-4073-01 3 52240032 52240032 G A ALAS1 Missense_Mutation p.M326I 0.34 tolerated(0.34) benign(0.074) TCGA-BC-4073-01 3 73453362 73453362 A G PDZRN3 Missense_Mutation p.M368T 0.28 deleterious(0.03) benign(0.009) TCGA-BC-4073-01 4 103228652 103228652 A C SLC39A8 Missense_Mutation p.F165V 0.27 deleterious(0) probably_damaging(0.999) TCGA-BC-4073-01 4 145579960 145579960 C T HHIP Missense_Mutation p.A164V 0.17 tolerated(0.57) benign(0.007) TCGA-BC-4073-01 4 148463817 148463817 A T EDNRA 3'UTR 0.32 TCGA-BC-4073-01 4 155719022 155719022 G C RBM46 Missense_Mutation p.D71H 0.26 deleterious(0) probably_damaging(0.984) TCGA-BC-4073-01 4 166999180 166999180 T A TLL1 Missense_Mutation p.L814I 0.26 tolerated(0.21) benign(0.047) TCGA-BC-4073-01 4 190876266 190876266 C A FRG1 Missense_Mutation p.A131E 0.04 deleterious(0) probably_damaging(0.96) TCGA-BC-4073-01 4 40351066 40351066 A G CHRNA9 Missense_Mutation p.Y178C 0.26 deleterious(0) probably_damaging(0.995) TCGA-BC-4073-01 4 55955862 55955862 G A KDR Silent p.S1100S 0.24 TCGA-BC-4073-01 4 56759928 56759928 G A EXOC1 Silent p.R645R 0.30 TCGA-BC-4073-01 4 57204730 57204730 C A AASDH Silent p.G1045G 0.27 TCGA-BC-4073-01 4 65145654 65145654 T A TECRL 3'UTR 0.16 TCGA-BC-4073-01 4 68934361 68934361 G T TMPRSS11F Missense_Mutation p.L244I 0.30 tolerated(0.06) possibly_damaging(0.447) TCGA-BC-4073-01 4 74270094 74270094 A G ALB Missense_Mutation p.Y17C 0.18 tolerated(0.11) possibly_damaging(0.76) TCGA-BC-4073-01 4 74451010 74451010 T G RASSF6 Silent p.R184R 0.31 TCGA-BC-4073-01 4 87735916 87735916 T A PTPN13 3'UTR 0.18 TCGA-BC-4073-01 5 127727761 127727761 C G FBN2 Missense_Mutation p.R518P 0.20 deleterious(0) probably_damaging(0.933) TCGA-BC-4073-01 5 137759953 137759953 G T KDM3B Missense_Mutation p.G1388W 0.28 deleterious(0) probably_damaging(0.999) TCGA-BC-4073-01 5 137759954 137759954 G T KDM3B Missense_Mutation p.G1388V 0.28 deleterious(0) probably_damaging(0.991) TCGA-BC-4073-01 5 140176834 140176834 A T PCDHA2 Missense_Mutation p.E762V 0.28 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-BC-4073-01 5 140208267 140208267 G A PCDHA6 Silent p.K197K 0.27 TCGA-BC-4073-01 5 141019591 141019591 G T RELL2 Missense_Mutation p.G203V 0.30 deleterious(0) benign(0.005) TCGA-BC-4073-01 5 143586733 143586733 C T KCTD16 Silent p.P152P 0.25 TCGA-BC-4073-01 5 145463968 145463968 G A PLAC8L1 3'UTR 0.25 TCGA-BC-4073-01 5 150843185 150843185 T A SLC36A1 Missense_Mutation p.V72E 0.23 deleterious(0) probably_damaging(0.918) TCGA-BC-4073-01 5 168244433 168244433 T A SLIT3 Missense_Mutation p.H222L 0.31 deleterious(0) benign(0.357) TCGA-BC-4073-01 5 178413645 178413645 C T GRM6 Missense_Mutation p.C537Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-BC-4073-01 5 31983740 31983740 A T PDZD2 Missense_Mutation p.Q319L 0.28 tolerated(0.06) possibly_damaging(0.848) TCGA-BC-4073-01 5 70936898 70936898 T A MCCC2 Silent p.V356V 0.20 TCGA-BC-4073-01 6 110763664 110763664 C T SLC22A16 Silent p.L322L 0.23 TCGA-BC-4073-01 6 13470848 13470848 T C GFOD1 Intron 0.11 TCGA-BC-4073-01 6 160679697 160679697 A T SLC22A2 Silent p.A31A 0.23 TCGA-BC-4073-01 6 21231335 21231335 G A CDKAL1 3'UTR 0.18 TCGA-BC-4073-01 6 25811931 25811931 G A SLC17A1 Missense_Mutation p.S322L 0.21 deleterious(0) possibly_damaging(0.543) TCGA-BC-4073-01 6 26032209 26032209 C T HIST1H3B Missense_Mutation p.R27H 0.48 tolerated_low_confidence(0.1) benign(0) TCGA-BC-4073-01 6 30951694 30951694 T C MUC21 5'UTR 0.25 TCGA-BC-4073-01 6 52858985 52858985 C A GSTA4 Silent p.V19V 0.27 TCGA-BC-4073-01 6 76715138 76715138 T A IMPG1 Missense_Mutation p.E334V 0.22 tolerated(0.33) benign(0.007) TCGA-BC-4073-01 6 80626136 80626136 A G ELOVL4 3'UTR 0.19 TCGA-BC-4073-01 7 122338762 122338763 CT - RNF133 Frame_Shift_Del p.R70Sfs*17 0.31 TCGA-BC-4073-01 7 123594252 123594252 C T SPAM1 Missense_Mutation p.L210F 0.26 deleterious(0.01) possibly_damaging(0.568) TCGA-BC-4073-01 7 139819020 139819020 C A KDM7A Splice_Site p.X380_splice 0.26 TCGA-BC-4073-01 7 142919945 142919945 C T TAS2R40 Silent p.F258F 0.19 TCGA-BC-4073-01 7 44795852 44795852 A T ZMIZ2 Missense_Mutation p.N2Y 0.18 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-BC-4073-01 7 48318705 48318705 T A ABCA13 Silent p.I2638I 0.25 TCGA-BC-4073-01 7 50135895 50135895 C T C7orf72 Missense_Mutation p.P72S 0.22 tolerated(0.06) benign(0.103) TCGA-BC-4073-01 8 104081076 104081076 G T ATP6V1C1 3'UTR 0.42 TCGA-BC-4073-01 8 104081077 104081077 C T ATP6V1C1 3'UTR 0.42 TCGA-BC-4073-01 8 133941375 133941375 C T TG Missense_Mutation p.A1585V 0.28 tolerated(0.43) benign(0.001) TCGA-BC-4073-01 8 37693203 37693203 C G GPR124 Missense_Mutation p.H655Q 0.27 tolerated(0.29) benign(0) TCGA-BC-4073-01 8 43152221 43152221 G A POTEA RNA 0.16 TCGA-BC-4073-01 8 48508456 48508456 C G SPIDR Nonsense_Mutation p.S394* 0.26 TCGA-BC-4073-01 8 72975034 72975034 C A TRPA1 Missense_Mutation p.E269D 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-BC-4073-01 9 115948581 115948581 C T FKBP15 Silent p.Q482Q 0.29 TCGA-BC-4073-01 9 16738381 16738381 C A BNC2 Missense_Mutation p.G36W 0.33 deleterious_low_confidence(0) unknown(0) TCGA-BC-4073-01 9 70484455 70484455 T - CBWD5 Frame_Shift_Del p.K86Nfs*3 0.12 TCGA-BC-4073-01 9 86403523 86403523 T C GKAP1 Missense_Mutation p.H144R 0.27 tolerated(0.19) benign(0.03) TCGA-BC-4073-01 9 99285642 99285642 C G CDC14B Missense_Mutation p.E382D 0.26 tolerated(0.19) benign(0.173) TCGA-BC-4073-01 X 11139892 11139892 G C HCCS Missense_Mutation p.D257H 0.45 deleterious(0.02) probably_damaging(1) TCGA-BC-4073-01 X 12838904 12838904 A G PRPS2 Silent p.K285K 0.53 TCGA-BC-4073-01 X 133674546 133674546 T C MIR450A2 RNA 0.53 TCGA-BC-4073-01 X 46541903 46541903 G A SLC9A7 Silent p.S131S 0.60 TCGA-BC-4073-01 X 49955717 49955717 A T AKAP4 Missense_Mutation p.S817R 0.42 deleterious(0.01) benign(0.133) TCGA-BC-A10Q-01 10 460026 460026 G - DIP2C Frame_Shift_Del p.P295Qfs*43 0.27 TCGA-BC-A10Q-01 10 63817024 63817024 T C ARID5B Missense_Mutation p.M332T 0.74 deleterious(0) probably_damaging(0.984) TCGA-BC-A10Q-01 11 118373507 118373507 G A KMT2A Silent p.V2300V 0.24 TCGA-BC-A10Q-01 11 130785772 130785772 A G SNX19 Silent p.N21N 0.16 TCGA-BC-A10Q-01 11 59578260 59578260 G A MRPL16 5'UTR 0.64 TCGA-BC-A10Q-01 12 108926103 108926103 C T SART3 Missense_Mutation p.G522S 0.14 deleterious(0) probably_damaging(1) TCGA-BC-A10Q-01 14 58605153 58605153 A T C14orf37 Silent p.S308S 0.49 TCGA-BC-A10Q-01 15 34656411 34656411 C T LPCAT4 Missense_Mutation p.G192E 0.10 tolerated(0.08) benign(0.111) TCGA-BC-A10Q-01 15 49531474 49531474 C T GALK2 Silent p.I138I 0.19 TCGA-BC-A10Q-01 15 66777396 66777396 A C MAP2K1 Silent p.V254V 0.10 TCGA-BC-A10Q-01 15 74290431 74290431 T G PML Missense_Mutation p.C72W 0.16 deleterious(0) probably_damaging(1) TCGA-BC-A10Q-01 17 10432777 10432777 C A MYH2 Nonsense_Mutation p.E1047* 0.11 TCGA-BC-A10Q-01 17 17075144 17075144 G A MPRIP Missense_Mutation p.R759H 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-BC-A10Q-01 17 3417232 3417232 T C TRPV3 Silent p.E785E 0.30 TCGA-BC-A10Q-01 17 4082167 4082167 G A ANKFY1 Silent p.S903S 0.24 TCGA-BC-A10Q-01 19 16186928 16186928 G C TPM4 Missense_Mutation p.E62D 0.53 deleterious(0.04) benign(0.381) TCGA-BC-A10Q-01 19 2351576 2351576 C T LLfos-48D6.1 3'Flank 0.14 TCGA-BC-A10Q-01 19 39010081 39010081 G A RYR1 Missense_Mutation p.V3416M 0.40 benign(0.202) TCGA-BC-A10Q-01 19 53014251 53014251 A C ZNF578 Missense_Mutation p.N206T 0.06 deleterious(0.02) possibly_damaging(0.453) TCGA-BC-A10Q-01 19 54573362 54573362 C T TARM1 Silent p.L237L 0.17 TCGA-BC-A10Q-01 19 56185355 56185355 C T U2AF2 Missense_Mutation p.T450M 0.22 deleterious(0) probably_damaging(0.966) TCGA-BC-A10Q-01 1 100483326 100483326 C T SLC35A3 Missense_Mutation p.S281L 0.15 deleterious(0) possibly_damaging(0.858) TCGA-BC-A10Q-01 1 149784882 149784882 T C HIST2H3D Missense_Mutation p.T119A 0.30 deleterious_low_confidence(0.01) benign(0.025) TCGA-BC-A10Q-01 1 224585919 224585919 A T WDR26 Missense_Mutation p.L552I 0.31 deleterious(0.02) possibly_damaging(0.893) TCGA-BC-A10Q-01 1 230410235 230410235 G A GALNT2 Silent p.L495L 0.08 TCGA-BC-A10Q-01 1 44684030 44684030 C T DMAP1 Silent p.L147L 0.28 TCGA-BC-A10Q-01 20 45920579 45920579 T C ZMYND8 Silent p.E207E 0.39 TCGA-BC-A10Q-01 21 44450022 44450022 G A PKNOX1 Silent p.T374T 0.42 TCGA-BC-A10Q-01 2 109380447 109380447 A G RANBP2 Missense_Mutation p.N1151S 0.55 tolerated(0.39) benign(0.017) TCGA-BC-A10Q-01 2 169850303 169850303 C A ABCB11 Missense_Mutation p.G234V 0.47 deleterious(0) probably_damaging(1) TCGA-BC-A10Q-01 2 179412302 179412302 A G TTN Missense_Mutation p.S31351P 0.17 TCGA-BC-A10Q-01 2 179532037 179532037 G A TTN Missense_Mutation p.T11908I 0.25 TCGA-BC-A10Q-01 2 20648318 20648318 A C RHOB 3'UTR 0.56 TCGA-BC-A10Q-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.47 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-BC-A10Q-01 2 237489915 237489915 C T ACKR3 Silent p.H269H 0.21 TCGA-BC-A10Q-01 2 75104368 75104368 G A HK2 Silent p.E317E 0.24 TCGA-BC-A10Q-01 3 12645687 12645687 G C RAF1 Missense_Mutation p.P261R 0.43 deleterious(0) probably_damaging(0.996) TCGA-BC-A10Q-01 3 184001717 184001717 G A ECE2 Missense_Mutation p.D439N 0.20 tolerated(0.1) possibly_damaging(0.717) TCGA-BC-A10Q-01 3 52440340 52440348 TGCGGTCGG - BAP1 In_Frame_Del p.P235_R237del 0.81 TCGA-BC-A10Q-01 4 74270015 74270015 C T ALB 5'UTR 0.42 TCGA-BC-A10Q-01 5 176728924 176728924 A G RAB24 Splice_Site p.X183_splice 0.13 TCGA-BC-A10Q-01 5 72144303 72144303 C - TNPO1 Frame_Shift_Del p.I37Sfs*22 0.38 TCGA-BC-A10Q-01 7 48315045 48315045 G T ABCA13 Missense_Mutation p.V1928F 0.48 benign(0.107) TCGA-BC-A10Q-01 7 65705902 65705902 C G TPST1 Missense_Mutation p.L164V 0.38 deleterious(0) probably_damaging(0.963) TCGA-BC-A10Q-01 7 87912274 87912274 G C STEAP4 Missense_Mutation p.D222E 0.41 tolerated(0.19) benign(0.012) TCGA-BC-A10Q-01 8 86569766 86569766 T A REXO1L1P 3'UTR 0.25 TCGA-BC-A10Q-01 9 136340108 136340108 A G SLC2A6 Missense_Mutation p.I301T 0.11 deleterious(0) probably_damaging(1) TCGA-BC-A10Q-01 X 135593729 135593729 A C HTATSF1 Missense_Mutation p.K609Q 0.30 deleterious_low_confidence(0) unknown(0) TCGA-BC-A10Q-01 X 152914788 152914788 G A DUSP9 Missense_Mutation p.V159M 0.12 tolerated(0.06) probably_damaging(0.983) TCGA-BC-A10Q-01 X 18919622 18919622 A T PHKA2 Missense_Mutation p.L1003Q 0.47 deleterious(0.03) probably_damaging(0.999) TCGA-BC-A10Q-01 X 32486707 32486707 C A DMD Nonsense_Mutation p.E1024* 0.16 TCGA-BC-A10Q-01 X 50653812 50653812 T G BMP15 Missense_Mutation p.L10R 0.19 deleterious(0) possibly_damaging(0.829) TCGA-BC-A10Q-01 X 83128315 83128316 AG - CYLC1 Frame_Shift_Del p.K201Rfs*11 0.27 TCGA-BC-A10R-01 10 13212934 13212934 A G MCM10 Missense_Mutation p.N7S 0.52 deleterious_low_confidence(0.01) benign(0.013) TCGA-BC-A10R-01 10 135025036 135025036 G T KNDC1 Missense_Mutation p.G1340V 0.34 deleterious(0) possibly_damaging(0.471) TCGA-BC-A10R-01 10 22606865 22606866 - G COMMD3 Frame_Shift_Ins p.A65Gfs*15 0.18 TCGA-BC-A10R-01 10 37505198 37505198 G C ANKRD30A Missense_Mutation p.G931R 0.10 tolerated(0.43) benign(0.198) TCGA-BC-A10R-01 10 7285628 7285628 G A SFMBT2 Silent p.L338L 0.10 TCGA-BC-A10R-01 10 85955343 85955343 T C CDHR1 Missense_Mutation p.V50A 0.25 deleterious(0.01) possibly_damaging(0.745) TCGA-BC-A10R-01 11 10327908 10327908 A G ADM Missense_Mutation p.K93R 0.10 deleterious(0.04) possibly_damaging(0.5) TCGA-BC-A10R-01 11 47195386 47195387 - G ARFGAP2 Frame_Shift_Ins p.A163Cfs*8 0.38 TCGA-BC-A10R-01 11 56185374 56185374 C G OR5R1 Missense_Mutation p.C112S 0.32 tolerated(0.06) benign(0.018) TCGA-BC-A10R-01 11 5878726 5878726 C A OR52E8 Silent p.L69L 0.20 TCGA-BC-A10R-01 12 109637260 109637260 C T ACACB Missense_Mutation p.P894L 0.18 deleterious(0.01) benign(0.076) TCGA-BC-A10R-01 12 122284995 122284995 T C HPD Missense_Mutation p.N241S 0.13 deleterious(0) probably_damaging(0.964) TCGA-BC-A10R-01 12 130648989 130648989 T C FZD10 Missense_Mutation p.V501A 0.14 deleterious(0.03) possibly_damaging(0.492) TCGA-BC-A10R-01 12 14947913 14947913 T C WBP11 Silent p.S171S 0.23 TCGA-BC-A10R-01 12 27655104 27655104 G T SMCO2 3'UTR 0.28 TCGA-BC-A10R-01 12 48135289 48135289 A G RAPGEF3 Missense_Mutation p.L641P 0.24 deleterious(0) probably_damaging(0.966) TCGA-BC-A10R-01 12 5154891 5154891 A T KCNA5 Missense_Mutation p.E526D 0.22 deleterious(0.02) probably_damaging(0.99) TCGA-BC-A10R-01 12 80732951 80732951 G A OTOGL Missense_Mutation p.G1644R 0.14 tolerated(0.07) possibly_damaging(0.664) TCGA-BC-A10R-01 13 114322366 114322366 A G GRK1 Missense_Mutation p.N222S 0.14 deleterious(0.04) benign(0.416) TCGA-BC-A10R-01 13 25459431 25459431 T A CENPJ Missense_Mutation p.S1154C 0.27 deleterious(0) possibly_damaging(0.566) TCGA-BC-A10R-01 13 95768200 95768200 C T ABCC4 Silent p.P837P 0.29 TCGA-BC-A10R-01 14 104488538 104488538 C T TDRD9 Missense_Mutation p.T826I 0.30 tolerated(0.59) benign(0.004) TCGA-BC-A10R-01 14 104642550 104642550 A G KIF26A Missense_Mutation p.D1142G 0.20 tolerated(0.61) benign(0.001) TCGA-BC-A10R-01 14 105175658 105175658 A G INF2 Missense_Mutation p.T664A 0.10 tolerated(0.21) unknown(0) TCGA-BC-A10R-01 14 20763925 20763925 T C TTC5 Missense_Mutation p.Q262R 0.16 tolerated(0.27) benign(0.001) TCGA-BC-A10R-01 14 23851737 23851737 C A MYH6 Missense_Mutation p.R1899L 0.20 deleterious(0) probably_damaging(1) TCGA-BC-A10R-01 14 33165314 33165314 A T AKAP6 Nonsense_Mutation p.K1000* 0.32 TCGA-BC-A10R-01 14 94052959 94052959 G A UNC79 Missense_Mutation p.E764K 0.28 tolerated_low_confidence(0.28) benign(0.115) TCGA-BC-A10R-01 15 22382936 22382936 A G OR4N4 Missense_Mutation p.H155R 0.28 deleterious(0) probably_damaging(0.919) TCGA-BC-A10R-01 15 27114447 27114447 T G GABRA5 Missense_Mutation p.F18V 0.21 tolerated_low_confidence(0.11) benign(0) TCGA-BC-A10R-01 15 31295063 31295063 A C TRPM1 Silent p.L1297L 0.22 TCGA-BC-A10R-01 15 34105063 34105063 G C RYR3 Splice_Site p.X3420_splice 0.18 TCGA-BC-A10R-01 15 41377743 41377743 C T INO80 Missense_Mutation p.E233K 0.19 tolerated(0.13) possibly_damaging(0.811) TCGA-BC-A10R-01 15 75968322 75968322 C T CSPG4 Missense_Mutation p.E2180K 0.32 tolerated(0.7) benign(0.002) TCGA-BC-A10R-01 15 85666356 85666356 C T PDE8A Missense_Mutation p.H673Y 0.20 deleterious(0) probably_damaging(1) TCGA-BC-A10R-01 16 3335685 3335685 A T ZNF263 Missense_Mutation p.L191F 0.17 tolerated(0.55) benign(0.307) TCGA-BC-A10R-01 16 70995980 70995980 C A HYDIN Silent p.L1950L 0.27 TCGA-BC-A10R-01 17 12666487 12666487 C T MYOCD Silent p.P829P 0.60 TCGA-BC-A10R-01 17 27449219 27449219 T G MYO18A Missense_Mutation p.K351T 0.63 deleterious(0.04) possibly_damaging(0.864) TCGA-BC-A10R-01 17 38189358 38189358 C T MED24 Missense_Mutation p.G258D 0.46 deleterious(0.04) possibly_damaging(0.629) TCGA-BC-A10R-01 17 4883278 4883278 C T CAMTA2 Missense_Mutation p.D470N 0.33 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BC-A10R-01 17 56582147 56582147 G A MTMR4 Missense_Mutation p.T431M 0.24 deleterious(0) probably_damaging(1) TCGA-BC-A10R-01 17 60501620 60501620 G A METTL2A Missense_Mutation p.E51K 0.30 tolerated(0.53) benign(0.003) TCGA-BC-A10R-01 17 7578524 7578524 G A TP53 Nonsense_Mutation p.Q136* 0.58 TCGA-BC-A10R-01 17 77711821 77711821 G A ENPP7 Silent p.V451V 0.47 TCGA-BC-A10R-01 17 79204256 79204256 G A ENTHD2 Intron 0.21 TCGA-BC-A10R-01 18 67992724 67992724 G C SOCS6 Missense_Mutation p.V274L 0.33 tolerated_low_confidence(0.53) benign(0.001) TCGA-BC-A10R-01 18 77108133 77108134 - TG ATP9B Frame_Shift_Ins p.F949Cfs*34 0.27 TCGA-BC-A10R-01 19 11143994 11143994 G A SMARCA4 Missense_Mutation p.R1192H 0.23 probably_damaging(1) TCGA-BC-A10R-01 19 11350899 11350899 G T C19orf80 Missense_Mutation p.S129I 0.39 tolerated(0.07) benign(0.165) TCGA-BC-A10R-01 19 11941474 11941474 A G ZNF440 Missense_Mutation p.N58S 0.27 deleterious(0.03) benign(0.32) TCGA-BC-A10R-01 19 14676612 14676612 C A TECR Missense_Mutation p.H286N 0.14 deleterious(0) probably_damaging(1) TCGA-BC-A10R-01 19 1484101 1484101 C T PCSK4 Missense_Mutation p.C365Y 0.55 deleterious(0) probably_damaging(1) TCGA-BC-A10R-01 19 36582154 36582154 G A WDR62 Missense_Mutation p.S696N 0.30 tolerated(1) benign(0.219) TCGA-BC-A10R-01 19 38377028 38377028 G T WDR87 Missense_Mutation p.P2389H 0.22 unknown(0) TCGA-BC-A10R-01 19 41073984 41073984 G A SPTBN4 Missense_Mutation p.R2251Q 0.29 tolerated_low_confidence(0.05) possibly_damaging(0.885) TCGA-BC-A10R-01 19 43529064 43529064 C T PSG11 Missense_Mutation p.G70E 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-BC-A10R-01 19 43763032 43763032 T G PSG9 Missense_Mutation p.N322T 0.23 tolerated(1) benign(0.369) TCGA-BC-A10R-01 19 49013717 49013717 T G LMTK3 Missense_Mutation p.K99T 0.14 probably_damaging(0.99) TCGA-BC-A10R-01 19 50124861 50124861 G A PRR12 Silent p.S1901S 0.22 TCGA-BC-A10R-01 19 50957533 50957533 C A MYBPC2 Missense_Mutation p.P641T 0.19 deleterious(0) probably_damaging(0.973) TCGA-BC-A10R-01 19 54611472 54611472 G A TFPT Missense_Mutation p.P168L 0.17 tolerated(0.17) benign(0.066) TCGA-BC-A10R-01 19 55175343 55175343 C G LILRB4 Missense_Mutation p.P68A 0.19 tolerated(0.77) benign(0.007) TCGA-BC-A10R-01 19 756999 756999 G C MISP Missense_Mutation p.G18A 0.12 tolerated(0.21) benign(0.001) TCGA-BC-A10R-01 1 114380695 114380695 G T PTPN22 Missense_Mutation p.P443T 0.37 deleterious(0.01) possibly_damaging(0.881) TCGA-BC-A10R-01 1 147380863 147380863 C T GJA8 Nonsense_Mutation p.Q261* 0.48 TCGA-BC-A10R-01 1 153924495 153924495 T C CRTC2 Silent p.P332P 0.32 TCGA-BC-A10R-01 1 155723018 155723018 C T GON4L Missense_Mutation p.R1940K 0.12 deleterious_low_confidence(0.03) benign(0.14) TCGA-BC-A10R-01 1 175355369 175355369 G A TNR Missense_Mutation p.P526S 0.10 deleterious(0.03) probably_damaging(1) TCGA-BC-A10R-01 1 182554500 182554500 T C RNASEL Missense_Mutation p.Y481C 0.17 deleterious(0) probably_damaging(0.989) TCGA-BC-A10R-01 1 221912367 221912367 G A DUSP10 Silent p.T240T 0.13 TCGA-BC-A10R-01 1 237948157 237948157 T A RYR2 Missense_Mutation p.L4382Q 0.29 probably_damaging(0.977) TCGA-BC-A10R-01 1 248525606 248525606 C A OR2T4 Missense_Mutation p.P242T 0.07 deleterious(0) possibly_damaging(0.764) TCGA-BC-A10R-01 1 248551626 248551626 C T OR2T6 Silent p.A239A 0.27 TCGA-BC-A10R-01 1 248684959 248684959 C T OR2G6 Silent p.T4T 0.34 TCGA-BC-A10R-01 1 248756794 248756794 G T OR2T10 Silent p.I92I 0.17 TCGA-BC-A10R-01 1 32688077 32688077 G A EIF3I Intron 0.43 TCGA-BC-A10R-01 1 62330235 62330235 A C INADL Missense_Mutation p.Q922P 0.58 tolerated(0.41) benign(0.001) TCGA-BC-A10R-01 20 1629885 1629885 T G SIRPG Missense_Mutation p.K81N 0.36 deleterious(0.03) benign(0.095) TCGA-BC-A10R-01 20 3735113 3735113 C T C20orf27 Missense_Mutation p.E144K 0.36 deleterious(0.02) benign(0.376) TCGA-BC-A10R-01 20 55048453 55048453 T A RTFDC1 Splice_Site p.X55_splice 0.24 TCGA-BC-A10R-01 20 61588131 61588131 C T SLC17A9 Missense_Mutation p.A25V 0.38 tolerated(1) benign(0.001) TCGA-BC-A10R-01 21 34022586 34022586 C T SYNJ1 Missense_Mutation p.S1021N 0.32 tolerated(0.52) benign(0.024) TCGA-BC-A10R-01 22 18358243 18358243 G A MICAL3 Intron 0.20 TCGA-BC-A10R-01 22 42606748 42606748 A T TCF20 Missense_Mutation p.S1522T 0.06 benign(0.02) TCGA-BC-A10R-01 22 45278947 45278947 G A PHF21B 3'UTR 0.18 TCGA-BC-A10R-01 2 114691952 114691952 G T ACTR3 Missense_Mutation p.V177F 0.18 deleterious(0) possibly_damaging(0.835) TCGA-BC-A10R-01 2 128395090 128395090 C A MYO7B 3'UTR 0.23 TCGA-BC-A10R-01 2 130930247 130930247 G T SMPD4 Missense_Mutation p.P192Q 0.20 deleterious(0) benign(0.29) TCGA-BC-A10R-01 2 158167786 158167786 A T GALNT5 Missense_Mutation p.I917F 0.21 tolerated(0.08) benign(0.02) TCGA-BC-A10R-01 2 160807990 160807990 G T PLA2R1 Missense_Mutation p.T1134N 0.31 deleterious(0.02) probably_damaging(0.976) TCGA-BC-A10R-01 2 198570098 198570098 G A MARS2 5'UTR 0.17 TCGA-BC-A10R-01 2 239237694 239237694 G T TRAF3IP1 Missense_Mutation p.G209V 0.16 tolerated(0.1) probably_damaging(0.988) TCGA-BC-A10R-01 2 31624141 31624141 G A XDH Missense_Mutation p.A84V 0.22 deleterious(0) possibly_damaging(0.786) TCGA-BC-A10R-01 2 84686477 84686477 A C SUCLG1 5'UTR 0.08 TCGA-BC-A10R-01 2 96072737 96072737 C A FAHD2A Missense_Mutation p.F98L 0.14 tolerated(1) benign(0) TCGA-BC-A10R-01 3 100972618 100972618 T A IMPG2 Silent p.G387G 0.30 TCGA-BC-A10R-01 3 121341432 121341432 A T FBXO40 Missense_Mutation p.T386S 0.09 tolerated(0.9) benign(0.002) TCGA-BC-A10R-01 3 130368255 130368255 C A COL6A6 Missense_Mutation p.A1861E 0.16 deleterious(0.02) benign(0.257) TCGA-BC-A10R-01 3 139062905 139062905 C T MRPS22 Missense_Mutation p.L13F 0.26 tolerated_low_confidence(0.51) benign(0.001) TCGA-BC-A10R-01 3 142388293 142388293 C T PLS1 Silent p.S44S 0.12 TCGA-BC-A10R-01 3 180332768 180332768 T C CCDC39 Missense_Mutation p.R923G 0.38 tolerated(0.12) unknown(0) TCGA-BC-A10R-01 3 184039489 184039489 G T EIF4G1 Nonsense_Mutation p.E380* 0.17 TCGA-BC-A10R-01 3 50220186 50220186 G T SEMA3F Silent p.A291A 0.43 TCGA-BC-A10R-01 3 52436687 52436688 - A BAP1 Frame_Shift_Ins p.D663* 0.45 TCGA-BC-A10R-01 3 64145681 64145681 C T PRICKLE2 Missense_Mutation p.E111K 0.26 deleterious(0) benign(0.34) TCGA-BC-A10R-01 4 135121364 135121364 G A PABPC4L Nonsense_Mutation p.R329* 0.15 TCGA-BC-A10R-01 4 42580401 42580401 C T ATP8A1 Missense_Mutation p.G335D 0.13 tolerated(0.68) possibly_damaging(0.724) TCGA-BC-A10R-01 4 5837733 5837733 C T CRMP1 Missense_Mutation p.R511K 0.18 tolerated(0.12) benign(0.176) TCGA-BC-A10R-01 4 651215 651215 A G PDE6B Missense_Mutation p.K445E 0.17 deleterious(0.01) benign(0.371) TCGA-BC-A10R-01 4 6718242 6718242 G T BLOC1S4 Missense_Mutation p.M102I 0.33 deleterious(0.04) possibly_damaging(0.854) TCGA-BC-A10R-01 5 138855859 138855859 G T TMEM173 Missense_Mutation p.T376K 0.47 deleterious(0) possibly_damaging(0.835) TCGA-BC-A10R-01 5 140237874 140237874 T C PCDHA10 Silent p.S747S 0.23 TCGA-BC-A10R-01 5 140746244 140746244 G A PCDHGA5 Missense_Mutation p.E783K 0.18 deleterious_low_confidence(0) possibly_damaging(0.703) TCGA-BC-A10R-01 5 16474884 16474884 G A FAM134B Missense_Mutation p.S487L 0.46 deleterious(0) benign(0.211) TCGA-BC-A10R-01 5 31534433 31534433 G C C5orf22 Missense_Mutation p.V46L 0.19 tolerated(0.25) benign(0.002) TCGA-BC-A10R-01 5 41055918 41055918 T G MROH2B Missense_Mutation p.E320A 0.10 tolerated(0.14) possibly_damaging(0.854) TCGA-BC-A10R-01 5 41510687 41510687 G A PLCXD3 5'UTR 0.31 TCGA-BC-A10R-01 6 31901476 31901476 T C CFB Missense_Mutation p.S116P 0.09 tolerated(0.12) benign(0.15) TCGA-BC-A10R-01 6 38670784 38670784 G A GLO1 Missense_Mutation p.A16V 0.21 tolerated(0.36) benign(0.023) TCGA-BC-A10R-01 6 52957296 52957296 C T FBXO9 Silent p.Y251Y 0.19 TCGA-BC-A10R-01 7 128489494 128489494 G A FLNC Silent p.G1687G 0.15 TCGA-BC-A10R-01 7 135107050 135107050 T C CNOT4 Missense_Mutation p.Q76R 0.16 tolerated(0.06) benign(0.078) TCGA-BC-A10R-01 7 142964755 142964755 C A GSTK1 Missense_Mutation p.L212M 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-BC-A10R-01 7 27168891 27168891 G A HOXA4 Missense_Mutation p.P306S 0.18 tolerated_low_confidence(0.09) unknown(0) TCGA-BC-A10R-01 7 27168892 27168892 A T HOXA4 Missense_Mutation p.H305Q 0.18 tolerated_low_confidence(0.17) unknown(0) TCGA-BC-A10R-01 7 84666319 84666319 C G SEMA3D Silent p.V359V 0.21 TCGA-BC-A10R-01 7 99227217 99227217 C T ZSCAN25 Silent p.Y403Y 0.24 TCGA-BC-A10R-01 7 99800188 99800188 C A STAG3 Nonsense_Mutation p.S892* 0.12 TCGA-BC-A10R-01 8 145700607 145700607 C A FOXH1 Missense_Mutation p.R71M 0.24 deleterious(0) probably_damaging(0.965) TCGA-BC-A10R-01 8 59409293 59409293 G A CYP7A1 Missense_Mutation p.R260C 0.23 deleterious(0) probably_damaging(1) TCGA-BC-A10R-01 9 21141286 21141286 C A IFNW1 Missense_Mutation p.R95L 0.29 tolerated(0.15) benign(0.162) TCGA-BC-A10R-01 9 33468831 33468831 C G NOL6 Missense_Mutation p.V356L 0.33 tolerated(0.14) benign(0.015) TCGA-BC-A10R-01 X 150844641 150844641 G A PASD1 3'UTR 0.16 TCGA-BC-A10R-01 X 153001604 153001604 G C ABCD1 Missense_Mutation p.E374Q 0.23 tolerated(0.38) benign(0.028) TCGA-BC-A10R-01 X 153595782 153595782 G A FLNA Missense_Mutation p.A284V 0.19 tolerated(0.1) benign(0.181) TCGA-BC-A10R-01 X 18283818 18283818 G C SCML2 Missense_Mutation p.Q279E 0.22 tolerated(0.47) benign(0.045) TCGA-BC-A10R-01 X 18972509 18972509 A C PHKA2 Missense_Mutation p.S34A 0.25 tolerated(0.1) benign(0.002) TCGA-BC-A10R-01 X 31496394 31496394 G A DMD Silent p.S2922S 0.17 TCGA-BC-A10R-01 X 49032070 49032070 G A PRICKLE3 Silent p.R600R 0.21 TCGA-BC-A10R-01 X 52677345 52677345 T C SSX7 Silent p.K144K 0.17 TCGA-BC-A10R-01 X 56291629 56291629 G A KLF8 Missense_Mutation p.R33Q 0.16 tolerated_low_confidence(1) benign(0.001) TCGA-BC-A10R-01 X 99658623 99658623 T A PCDH19 Silent p.I729I 0.24 TCGA-BC-A10T-01 10 103825804 103825804 C T HPS6 Silent p.F191F 0.37 TCGA-BC-A10T-01 10 28420525 28420525 T C MPP7 Silent p.V137V 0.37 TCGA-BC-A10T-01 10 50028385 50028385 G A WDFY4 Missense_Mutation p.R1871Q 0.38 tolerated(0.27) benign(0.003) TCGA-BC-A10T-01 10 50040632 50040632 T C WDFY4 Missense_Mutation p.S2181P 0.15 tolerated(0.21) benign(0.048) TCGA-BC-A10T-01 10 51769163 51769163 G A AGAP6 Silent p.T426T 0.31 TCGA-BC-A10T-01 10 97916784 97916784 G T ZNF518A RNA 0.32 TCGA-BC-A10T-01 10 98108095 98108095 T C OPALIN Missense_Mutation p.D67G 0.26 deleterious_low_confidence(0.01) benign(0.015) TCGA-BC-A10T-01 11 103797732 103797732 C T PDGFD Missense_Mutation p.V299M 0.36 deleterious(0) probably_damaging(0.984) TCGA-BC-A10T-01 11 125237753 125237753 C T PKNOX2 Silent p.T33T 0.34 TCGA-BC-A10T-01 11 133826687 133826687 A G IGSF9B 5'UTR 0.32 TCGA-BC-A10T-01 11 55861148 55861148 G T OR8I2 Missense_Mutation p.R122L 0.33 deleterious(0) possibly_damaging(0.566) TCGA-BC-A10T-01 11 66206166 66206166 G T MRPL11 Silent p.I20I 0.31 TCGA-BC-A10T-01 11 67075197 67075197 C T SSH3 Silent p.A260A 0.36 TCGA-BC-A10T-01 11 67223230 67223230 C T CABP4 Silent p.Y112Y 0.44 TCGA-BC-A10T-01 12 104208729 104208729 T C NT5DC3 Missense_Mutation p.I127V 0.53 tolerated(0.36) benign(0.075) TCGA-BC-A10T-01 12 109540669 109540669 T C UNG Missense_Mutation p.S187P 0.27 deleterious(0.02) possibly_damaging(0.619) TCGA-BC-A10T-01 12 20833113 20833113 T A PDE3A Missense_Mutation p.S1112T 0.22 tolerated(0.32) benign(0.001) TCGA-BC-A10T-01 12 25348052 25348052 G T CASC1 5'UTR 0.38 TCGA-BC-A10T-01 12 56087102 56087102 C T ITGA7 Splice_Site p.X850_splice 0.23 TCGA-BC-A10T-01 12 56230959 56230959 C A MMP19 Missense_Mutation p.R463I 0.53 tolerated(0.06) possibly_damaging(0.548) TCGA-BC-A10T-01 12 56332338 56332338 C T DGKA Silent p.D131D 0.25 TCGA-BC-A10T-01 12 6884573 6884573 G A LAG3 Missense_Mutation p.D306N 0.07 deleterious(0.01) possibly_damaging(0.787) TCGA-BC-A10T-01 12 94706794 94706794 C T CCDC41 Splice_Site p.X570_splice 0.53 TCGA-BC-A10T-01 12 978315 978315 C T WNK1 Intron 0.32 TCGA-BC-A10T-01 13 37599542 37599542 T C SUPT20H Missense_Mutation p.N415S 0.31 tolerated(0.65) benign(0.002) TCGA-BC-A10T-01 14 24684913 24684913 C A MDP1 Intron 0.33 TCGA-BC-A10T-01 15 101592005 101592005 G A LRRK1 Missense_Mutation p.D1177N 0.06 tolerated(0.22) benign(0.003) TCGA-BC-A10T-01 15 24924085 24924085 T C NPAP1 Missense_Mutation p.M1024T 0.37 tolerated_low_confidence(0.36) benign(0.013) TCGA-BC-A10T-01 15 48057214 48057214 G T SEMA6D Missense_Mutation p.S463I 0.28 deleterious(0) probably_damaging(1) TCGA-BC-A10T-01 15 52357196 52357196 A G MAPK6 Silent p.%3D 0.39 TCGA-BC-A10T-01 15 54435882 54435882 G A UNC13C Splice_Site p.X1024_splice 0.28 TCGA-BC-A10T-01 15 77087747 77087747 C T SCAPER Missense_Mutation p.A216T 0.29 tolerated(0.29) benign(0.033) TCGA-BC-A10T-01 15 89450543 89450543 A C MFGE8 Silent p.S90S 0.29 TCGA-BC-A10T-01 15 89745077 89745077 C T ABHD2 3'UTR 0.33 TCGA-BC-A10T-01 17 39079084 39079084 A T KRT23 3'UTR 0.58 TCGA-BC-A10T-01 17 5265110 5265110 C T RABEP1 Intron 0.20 TCGA-BC-A10T-01 17 58539193 58539193 C A APPBP2 Missense_Mutation p.C305F 0.40 tolerated(0.15) benign(0.123) TCGA-BC-A10T-01 17 65889635 65889635 T G BPTF Silent p.A735A 0.39 TCGA-BC-A10T-01 17 7139869 7139869 G C PHF23 Missense_Mutation p.T126S 0.26 tolerated(0.06) benign(0.22) TCGA-BC-A10T-01 17 74387574 74387574 T A UBE2O Missense_Mutation p.Q1110L 0.24 deleterious(0) possibly_damaging(0.854) TCGA-BC-A10T-01 17 78328292 78328292 A G RNF213 Missense_Mutation p.Q3593R 0.24 benign(0.105) TCGA-BC-A10T-01 18 56651549 56651549 G A ZNF532 Missense_Mutation p.E1253K 0.38 tolerated(0.3) benign(0.029) TCGA-BC-A10T-01 18 63511096 63511096 G T CDH7 Missense_Mutation p.A344S 0.39 tolerated(1) benign(0.059) TCGA-BC-A10T-01 19 36237826 36237826 C T PSENEN 3'UTR 0.22 TCGA-BC-A10T-01 19 40728778 40728778 C A CNTD2 3'UTR 0.33 TCGA-BC-A10T-01 19 54261513 54261513 C T MIR1283-2 RNA 0.36 TCGA-BC-A10T-01 19 54573335 54573335 G C TARM1 Missense_Mutation p.I246M 0.25 tolerated(0.1) possibly_damaging(0.83) TCGA-BC-A10T-01 1 150532349 150532349 C T ADAMTSL4 Missense_Mutation p.P1019L 0.41 tolerated(0.17) benign(0.111) TCGA-BC-A10T-01 1 197876409 197876409 A G C1orf53 3'UTR 0.26 TCGA-BC-A10T-01 1 200817808 200817808 C - CAMSAP2 Frame_Shift_Del p.S638Lfs*24 0.28 TCGA-BC-A10T-01 1 228462084 228462084 C T OBSCN Silent p.D2249D 0.44 TCGA-BC-A10T-01 1 247615077 247615077 G - OR2B11 Frame_Shift_Del p.L70Cfs*97 0.20 TCGA-BC-A10T-01 1 34174693 34174693 A T CSMD2 Missense_Mutation p.L1151H 0.32 deleterious(0) probably_damaging(0.995) TCGA-BC-A10T-01 1 47603268 47603268 C A CYP4A22 Silent p.L37L 0.27 TCGA-BC-A10T-01 1 60223658 60223658 A G FGGY Missense_Mutation p.D547G 0.40 tolerated(0.37) benign(0.096) TCGA-BC-A10T-01 1 79385992 79385992 A G ELTD1 Missense_Mutation p.I446T 0.38 deleterious(0) probably_damaging(1) TCGA-BC-A10T-01 1 86173940 86173940 T G ZNHIT6 Missense_Mutation p.K10Q 0.31 tolerated_low_confidence(0.07) benign(0.065) TCGA-BC-A10T-01 1 91977431 91977431 C A CDC7 Missense_Mutation p.H175N 0.34 deleterious(0) probably_damaging(1) TCGA-BC-A10T-01 20 20350563 20350563 C A INSM1 3'UTR 0.41 TCGA-BC-A10T-01 20 44997586 44997586 A T ELMO2 Missense_Mutation p.S636T 0.32 deleterious(0.01) benign(0.222) TCGA-BC-A10T-01 20 57561177 57561177 T A NELFCD Missense_Mutation p.D48E 0.45 tolerated(0.46) benign(0.002) TCGA-BC-A10T-01 20 62178615 62178615 C T SRMS Missense_Mutation p.G68R 0.34 deleterious(0.02) benign(0.116) TCGA-BC-A10T-01 21 30909389 30909389 A T GRIK1 3'UTR 0.26 TCGA-BC-A10T-01 21 33340695 33340695 C A HUNK Missense_Mutation p.N336K 0.32 deleterious(0.01) probably_damaging(0.985) TCGA-BC-A10T-01 21 46707671 46707671 G A POFUT2 Missense_Mutation p.A39V 0.45 tolerated(0.51) benign(0.001) TCGA-BC-A10T-01 21 47556254 47556254 G A FTCD 3'UTR 0.43 TCGA-BC-A10T-01 22 32188763 32188763 C T DEPDC5 Nonsense_Mutation p.R243* 0.50 TCGA-BC-A10T-01 22 38878578 38878578 T C KDELR3 3'Flank 0.38 TCGA-BC-A10T-01 22 46931320 46931320 G T CELSR1 Missense_Mutation p.P583H 0.67 deleterious(0) possibly_damaging(0.811) TCGA-BC-A10T-01 2 131674545 131674545 C T ARHGEF4 5'UTR 0.43 TCGA-BC-A10T-01 2 141260598 141260598 C T LRP1B Missense_Mutation p.D2866N 0.33 possibly_damaging(0.822) TCGA-BC-A10T-01 2 202900125 202900125 T C FZD7 Missense_Mutation p.F252S 0.35 deleterious(0) probably_damaging(0.994) TCGA-BC-A10T-01 2 219866423 219866423 T C CCDC108 3'Flank 0.14 TCGA-BC-A10T-01 2 223163313 223163313 C A PAX3 Missense_Mutation p.V8L 0.31 tolerated_low_confidence(0.2) benign(0.003) TCGA-BC-A10T-01 2 238263564 238263564 C T COL6A3 Missense_Mutation p.R2202Q 0.31 benign(0.002) TCGA-BC-A10T-01 2 24240356 24240356 G A MFSD2B Silent p.L193L 0.22 TCGA-BC-A10T-01 2 40656836 40656836 T G SLC8A1 Silent p.T195T 0.49 TCGA-BC-A10T-01 2 43819171 43819171 C A THADA Nonsense_Mutation p.E31* 0.61 TCGA-BC-A10T-01 2 61415443 61415443 C G USP34 Missense_Mutation p.D3479H 0.55 deleterious_low_confidence(0.01) benign(0.11) TCGA-BC-A10T-01 2 70923474 70923474 A T ADD2 Missense_Mutation p.L126Q 0.27 deleterious(0) probably_damaging(0.976) TCGA-BC-A10T-01 2 72727062 72727062 T A EXOC6B Missense_Mutation p.N403Y 0.29 deleterious(0) probably_damaging(0.997) TCGA-BC-A10T-01 2 96919804 96919804 G A TMEM127 Silent p.L153L 0.08 TCGA-BC-A10T-01 3 149051080 149051080 G A TM4SF18 Silent p.F30F 0.28 TCGA-BC-A10T-01 3 48264925 48264925 G T CAMP 5'UTR 0.36 TCGA-BC-A10T-01 3 96706230 96706230 A T EPHA6 Silent p.V169V 0.36 TCGA-BC-A10T-01 4 110447421 110447421 G A SEC24B Missense_Mutation p.R944H 0.06 deleterious(0) probably_damaging(0.979) TCGA-BC-A10T-01 4 6718594 6718594 C A BLOC1S4 3'UTR 0.20 TCGA-BC-A10T-01 5 128977592 128977592 A T ADAMTS19 Missense_Mutation p.E598V 0.29 tolerated(0.06) benign(0.17) TCGA-BC-A10T-01 5 159682609 159682609 C T CCNJL Silent p.R278R 0.28 TCGA-BC-A10T-01 5 32791214 32791214 A T NPR3 3'UTR 0.34 TCGA-BC-A10T-01 5 55247872 55247872 T C IL6ST Silent p.K528K 0.32 TCGA-BC-A10T-01 6 146977910 146977910 A C ADGB Missense_Mutation p.M136L 0.34 tolerated(0.11) possibly_damaging(0.625) TCGA-BC-A10T-01 6 152676100 152676100 T C SYNE1 Silent p.V3540V 0.40 TCGA-BC-A10T-01 6 154331688 154331688 C T OPRM1 5'UTR 0.26 TCGA-BC-A10T-01 7 117828373 117828373 G T NAA38 Missense_Mutation p.L38F 0.33 deleterious(0) probably_damaging(0.984) TCGA-BC-A10T-01 7 134852549 134852549 T A C7orf49 Missense_Mutation p.T50S 0.38 tolerated(0.12) benign(0.004) TCGA-BC-A10T-01 7 134852550 134852550 C A C7orf49 Silent p.A49A 0.37 TCGA-BC-A10T-01 7 151833918 151833918 C A KMT2C Nonstop_Mutation p.*4912Lext*36 0.27 TCGA-BC-A10T-01 7 2579479 2579479 C T BRAT1 Missense_Mutation p.S480N 0.37 tolerated(0.41) benign(0.009) TCGA-BC-A10T-01 7 4009044 4009044 C T SDK1 Missense_Mutation p.L568F 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-BC-A10T-01 7 82997179 82997179 T C SEMA3E Missense_Mutation p.K684R 0.39 tolerated(1) benign(0.004) TCGA-BC-A10T-01 7 87179344 87179344 C T ABCB1 Silent p.R459R 0.23 TCGA-BC-A10T-01 7 89938655 89938655 A G C7orf63 Missense_Mutation p.T877A 0.37 tolerated(0.07) probably_damaging(0.961) TCGA-BC-A10T-01 8 125987939 125987939 G A ZNF572 Silent p.E19E 0.22 TCGA-BC-A10T-01 8 145639418 145639418 A T SLC39A4 Missense_Mutation p.L404Q 0.31 deleterious(0) probably_damaging(0.973) TCGA-BC-A10T-01 8 18730127 18730127 C G PSD3 Missense_Mutation p.A83P 0.53 tolerated_low_confidence(0.22) benign(0.001) TCGA-BC-A10T-01 8 42587132 42587132 G A CHRNB3 Missense_Mutation p.V228I 0.34 tolerated(0.62) benign(0.171) TCGA-BC-A10T-01 8 55372609 55372609 T A SOX17 3'UTR 0.30 TCGA-BC-A10T-01 9 119115996 119115996 G C PAPPA Missense_Mutation p.G1424A 0.37 deleterious(0.03) probably_damaging(0.939) TCGA-BC-A10T-01 9 36630338 36630338 A G MELK Missense_Mutation p.I237V 0.35 tolerated(0.45) benign(0.012) TCGA-BC-A10T-01 9 43630592 43630592 C T SPATA31A6 Missense_Mutation p.G37E 0.33 tolerated(0.51) benign(0.019) TCGA-BC-A10T-01 9 75451032 75451032 A G TMC1 3'UTR 0.53 TCGA-BC-A10T-01 X 100871412 100871412 G T ARMCX6 Silent p.R67R 0.84 TCGA-BC-A10T-01 X 70281775 70281775 G C SNX12 Missense_Mutation p.L102V 0.32 deleterious(0.01) probably_damaging(0.971) TCGA-BC-A10U-01 10 106976778 106976778 G C SORCS3 Missense_Mutation p.G878R 0.46 tolerated(0.05) probably_damaging(1) TCGA-BC-A10U-01 10 127684064 127684064 G C FANK1 Missense_Mutation p.G132A 0.41 tolerated(0.23) benign(0.192) TCGA-BC-A10U-01 10 128193357 128193357 C A C10orf90 Missense_Mutation p.A138S 0.41 tolerated(0.27) benign(0.041) TCGA-BC-A10U-01 10 134981785 134981785 C A KNDC1 Missense_Mutation p.P110H 0.32 deleterious(0) probably_damaging(0.979) TCGA-BC-A10U-01 10 15858832 15858832 A G FAM188A Splice_Site p.X294_splice 0.33 TCGA-BC-A10U-01 10 22618024 22618024 A G BMI1 Silent p.L206L 0.34 TCGA-BC-A10U-01 10 46999358 46999358 G A GPRIN2 Missense_Mutation p.G160S 0.21 tolerated(1) benign(0.003) TCGA-BC-A10U-01 10 50827803 50827803 G C CHAT Missense_Mutation p.Q140H 0.38 deleterious(0.04) benign(0.183) TCGA-BC-A10U-01 10 52834527 52834527 G T PRKG1 Missense_Mutation p.Q59H 0.43 tolerated(0.15) benign(0) TCGA-BC-A10U-01 10 7773850 7773850 T - ITIH2 Frame_Shift_Del p.V513Afs*29 0.37 TCGA-BC-A10U-01 10 81316116 81316116 A T SFTPA2 3'UTR 0.47 TCGA-BC-A10U-01 10 97402774 97402774 C T ALDH18A1 Missense_Mutation p.G93E 0.43 deleterious(0.01) probably_damaging(1) TCGA-BC-A10U-01 10 97440367 97440367 C T TCTN3 Splice_Site p.X485_splice 0.06 TCGA-BC-A10U-01 10 99519066 99519066 G A ZFYVE27 3'UTR 0.47 TCGA-BC-A10U-01 11 113078689 113078689 G A NCAM1 Missense_Mutation p.G353D 0.08 deleterious(0) probably_damaging(0.999) TCGA-BC-A10U-01 11 11964527 11964527 G T USP47 Missense_Mutation p.D919Y 0.40 deleterious(0.01) probably_damaging(0.991) TCGA-BC-A10U-01 11 123909593 123909593 C A OR10G7 Missense_Mutation p.G39V 0.53 deleterious(0) benign(0.242) TCGA-BC-A10U-01 11 1261426 1261426 A G MUC5B Missense_Mutation p.E1264G 0.09 unknown(0) TCGA-BC-A10U-01 11 1280240 1280240 C A MUC5B Missense_Mutation p.D5554E 0.38 unknown(0) TCGA-BC-A10U-01 11 130297694 130297694 C T ADAMTS8 Missense_Mutation p.R163Q 0.48 tolerated(0.64) benign(0.001) TCGA-BC-A10U-01 11 134073725 134073725 A G NCAPD3 Missense_Mutation p.L431P 0.34 deleterious(0.01) possibly_damaging(0.594) TCGA-BC-A10U-01 11 3111131 3111131 G A OSBPL5 Nonsense_Mutation p.Q816* 0.30 TCGA-BC-A10U-01 11 46747715 46747715 A G F2 Missense_Mutation p.N289S 0.45 tolerated(0.44) benign(0.068) TCGA-BC-A10U-01 11 5020988 5020988 G A OR51L1 Missense_Mutation p.G259E 0.46 deleterious(0) probably_damaging(0.943) TCGA-BC-A10U-01 11 5079905 5079905 T A OR52E2 Missense_Mutation p.E318V 0.28 tolerated_low_confidence(0.15) benign(0.004) TCGA-BC-A10U-01 11 5566529 5566529 G T OR52H1 Silent p.A75A 0.38 TCGA-BC-A10U-01 11 62761284 62761284 C T SLC22A8 Missense_Mutation p.C428Y 0.45 deleterious(0) probably_damaging(1) TCGA-BC-A10U-01 11 63918758 63918758 A G MACROD1 Missense_Mutation p.L157P 0.35 deleterious(0) possibly_damaging(0.557) TCGA-BC-A10U-01 11 65810799 65810799 C A GAL3ST3 Nonsense_Mutation p.E159* 0.24 TCGA-BC-A10U-01 11 66191452 66191452 C T NPAS4 Missense_Mutation p.T364I 0.46 deleterious(0.01) benign(0.013) TCGA-BC-A10U-01 11 6631843 6631843 G A ILK 3'UTR 0.38 TCGA-BC-A10U-01 11 66807407 66807409 GGA TC SYT12 Frame_Shift_Del p.E119Rfs*19 0.52 TCGA-BC-A10U-01 11 72947031 72947031 A C P2RY2 3'UTR 0.26 TCGA-BC-A10U-01 11 89924847 89924847 A G NAALAD2 Missense_Mutation p.K719E 0.37 tolerated(0.06) possibly_damaging(0.887) TCGA-BC-A10U-01 11 92616349 92616349 A G FAT3 Missense_Mutation p.S4243G 0.58 benign(0) TCGA-BC-A10U-01 12 122745969 122745969 C G VPS33A Missense_Mutation p.D108H 0.38 deleterious(0.01) benign(0.152) TCGA-BC-A10U-01 12 22606893 22606893 C G C2CD5 Silent p.G936G 0.35 TCGA-BC-A10U-01 12 3939168 3939168 G C PARP11 Missense_Mutation p.A12G 0.44 tolerated_low_confidence(0.39) benign(0.002) TCGA-BC-A10U-01 12 49312509 49312509 C A CCDC65 Missense_Mutation p.S283R 0.43 tolerated(0.43) benign(0.185) TCGA-BC-A10U-01 12 49449093 49449100 CTTCTGGC - KMT2D Frame_Shift_Del p.S3Tfs*4 0.24 TCGA-BC-A10U-01 12 53647509 53647509 C A MFSD5 Missense_Mutation p.S404Y 0.38 deleterious(0.01) probably_damaging(0.93) TCGA-BC-A10U-01 12 66641584 66641584 C A IRAK3 Missense_Mutation p.P475Q 0.35 deleterious(0.04) probably_damaging(0.992) TCGA-BC-A10U-01 12 6710565 6710565 G A CHD4 Missense_Mutation p.A230V 0.39 tolerated(0.61) possibly_damaging(0.739) TCGA-BC-A10U-01 12 6840223 6840223 C T COPS7A 3'UTR 0.48 TCGA-BC-A10U-01 12 71139795 71139795 G A PTPRR Silent p.H270H 0.39 TCGA-BC-A10U-01 12 93148009 93148009 C G PLEKHG7 Nonsense_Mutation p.Y153* 0.35 TCGA-BC-A10U-01 12 97051774 97051774 G T C12orf55 Missense_Mutation p.D1739Y 0.46 deleterious(0) probably_damaging(0.987) TCGA-BC-A10U-01 12 98938128 98938128 G C TMPO Splice_Site p.X261_splice 0.36 TCGA-BC-A10U-01 13 23905027 23905027 T C SACS Missense_Mutation p.R4330G 0.05 probably_damaging(0.977) TCGA-BC-A10U-01 13 36776092 36776092 A G SOHLH2 Missense_Mutation p.C140R 0.37 tolerated(0.34) benign(0.002) TCGA-BC-A10U-01 13 50589145 50589146 - T TRIM13 3'Flank 0.38 TCGA-BC-A10U-01 13 84456023 84456023 G A SLITRK1 5'UTR 0.37 TCGA-BC-A10U-01 14 105643003 105643004 - C NUDT14 Frame_Shift_Ins p.V99Gfs*4 0.50 TCGA-BC-A10U-01 14 21543017 21543017 C G ARHGEF40 Silent p.G376G 0.57 TCGA-BC-A10U-01 14 23623535 23623535 C T SLC7A8 Intron 0.46 TCGA-BC-A10U-01 14 52509060 52509060 G T NID2 Missense_Mutation p.H530N 0.52 deleterious(0.04) benign(0.259) TCGA-BC-A10U-01 14 60903550 60903550 A T C14orf39 3'UTR 0.37 TCGA-BC-A10U-01 14 81862242 81862242 C G STON2 Missense_Mutation p.E123D 0.42 tolerated_low_confidence(0.49) benign(0.025) TCGA-BC-A10U-01 15 52418147 52418147 C A GNB5 Missense_Mutation p.S336I 0.38 deleterious(0) probably_damaging(0.988) TCGA-BC-A10U-01 16 10574815 10574815 A G ATF7IP2 Silent p.A543A 0.34 TCGA-BC-A10U-01 16 30724538 30724538 A T SRCAP Nonsense_Mutation p.K714* 0.38 TCGA-BC-A10U-01 16 30724539 30724539 A G SRCAP Missense_Mutation p.K714R 0.39 unknown(0) TCGA-BC-A10U-01 16 57449875 57449875 C A CCL17 3'UTR 0.41 TCGA-BC-A10U-01 17 15642108 15642108 A G TBC1D26 Missense_Mutation p.Q154R 0.56 tolerated(1) possibly_damaging(0.783) TCGA-BC-A10U-01 17 19285441 19285441 C T MAPK7 Missense_Mutation p.P609S 0.36 tolerated(0.84) unknown(0) TCGA-BC-A10U-01 17 29162318 29162318 T C ATAD5 Missense_Mutation p.F407L 0.35 deleterious(0) possibly_damaging(0.649) TCGA-BC-A10U-01 17 38600272 38600272 C A IGFBP4 Missense_Mutation p.H95Q 0.35 tolerated(0.28) probably_damaging(0.956) TCGA-BC-A10U-01 17 39577046 39577046 A T KRT37 3'UTR 0.45 TCGA-BC-A10U-01 17 39785337 39785337 G T KRT17 5'Flank 0.28 TCGA-BC-A10U-01 17 42855379 42855379 T A ADAM11 Missense_Mutation p.S710R 0.45 deleterious(0) probably_damaging(0.923) TCGA-BC-A10U-01 17 4579709 4579709 T C PELP1 Missense_Mutation p.S266G 0.08 benign(0.022) TCGA-BC-A10U-01 17 71382609 71382609 C T SDK2 Silent p.S1491S 0.24 TCGA-BC-A10U-01 17 73568132 73568132 A G LLGL2 Missense_Mutation p.E816G 0.10 deleterious(0) probably_damaging(0.999) TCGA-BC-A10U-01 17 7578211 7578211 C T TP53 Missense_Mutation p.R213Q 0.65 deleterious(0) probably_damaging(1) TCGA-BC-A10U-01 18 10696431 10696440 CAGTGTCAGC - PIEZO2 Frame_Shift_Del p.A2196Wfs*37 0.34 TCGA-BC-A10U-01 18 14542729 14542729 A G POTEC Silent p.D139D 0.41 TCGA-BC-A10U-01 18 55996342 55996342 G C NEDD4L Missense_Mutation p.G266R 0.44 tolerated(0.64) benign(0.001) TCGA-BC-A10U-01 18 60241883 60241883 T G ZCCHC2 Missense_Mutation p.F857V 0.31 tolerated(0.14) probably_damaging(0.994) TCGA-BC-A10U-01 19 12059506 12059506 A T ZNF700 Nonsense_Mutation p.K223* 0.39 TCGA-BC-A10U-01 19 19756175 19756175 T C ATP13A1 3'UTR 0.38 TCGA-BC-A10U-01 19 22156136 22156136 G T ZNF208 Missense_Mutation p.T567N 0.36 tolerated(0.39) benign(0.004) TCGA-BC-A10U-01 19 22362653 22362653 C A ZNF676 3'UTR 0.40 TCGA-BC-A10U-01 19 30936253 30936254 - AAGT ZNF536 Frame_Shift_Ins p.L598* 0.16 TCGA-BC-A10U-01 19 408323 408323 C A C2CD4C Silent p.R13R 0.46 TCGA-BC-A10U-01 19 41089323 41089323 T A SHKBP1 Missense_Mutation p.I327N 0.35 deleterious(0) probably_damaging(0.993) TCGA-BC-A10U-01 19 53304625 53304625 C A ZNF28 Missense_Mutation p.G158V 0.04 deleterious(0.01) possibly_damaging(0.621) TCGA-BC-A10U-01 19 53856410 53856410 G A ZNF845 Missense_Mutation p.E828K 0.48 tolerated(0.07) probably_damaging(0.993) TCGA-BC-A10U-01 19 54216629 54216629 C T MIR519D RNA 0.40 TCGA-BC-A10U-01 19 7687527 7687527 G A XAB2 Silent p.A464A 0.46 TCGA-BC-A10U-01 19 9057202 9057202 C A MUC16 Nonsense_Mutation p.E10082* 0.34 TCGA-BC-A10U-01 1 107937923 107937923 C T NTNG1 Silent p.P345P 0.44 TCGA-BC-A10U-01 1 157739786 157739786 G A FCRL2 Silent p.G155G 0.58 TCGA-BC-A10U-01 1 160295377 160295377 C T COPA Missense_Mutation p.D188N 0.60 deleterious(0.01) possibly_damaging(0.628) TCGA-BC-A10U-01 1 168014320 168014320 G C DCAF6 Missense_Mutation p.E705Q 0.60 deleterious_low_confidence(0.01) benign(0.078) TCGA-BC-A10U-01 1 183093943 183093943 A G LAMC1 Missense_Mutation p.Y860C 0.21 deleterious(0.03) probably_damaging(0.957) TCGA-BC-A10U-01 1 19511591 19511591 A G UBR4 Splice_Site p.X646_splice 0.42 TCGA-BC-A10U-01 1 202858125 202858125 C G RABIF Silent p.G34G 0.46 TCGA-BC-A10U-01 1 228468480 228468480 C A OBSCN Missense_Mutation p.A3156D 0.24 probably_damaging(0.987) TCGA-BC-A10U-01 1 228529240 228529240 C T OBSCN Missense_Mutation p.R6944W 0.36 probably_damaging(1) TCGA-BC-A10U-01 1 236416758 236416758 A G ERO1LB Silent p.C90C 0.23 TCGA-BC-A10U-01 1 23689653 23689653 T C ZNF436 Silent p.Q74Q 0.44 TCGA-BC-A10U-01 1 238090055 238090055 C A RP11-193H5.1 RNA 0.42 TCGA-BC-A10U-01 1 24119236 24119236 C A LYPLA2 Silent p.R22R 0.09 TCGA-BC-A10U-01 1 24410801 24410801 T C MYOM3 Intron 0.53 TCGA-BC-A10U-01 1 248262994 248262994 T C OR2L13 Missense_Mutation p.M106T 0.56 deleterious(0.01) benign(0.009) TCGA-BC-A10U-01 1 248525893 248525893 A G OR2T4 Silent p.L337L 0.33 TCGA-BC-A10U-01 1 248813316 248813316 G T OR2T27 Nonsense_Mutation p.Y290* 0.14 TCGA-BC-A10U-01 1 26488999 26488999 C T FAM110D 3'UTR 0.46 TCGA-BC-A10U-01 1 53555552 53555552 G C SLC1A7 Silent p.L427L 0.43 TCGA-BC-A10U-01 20 23017142 23017142 A G SSTR4 Missense_Mutation p.E341G 0.09 tolerated(0.22) possibly_damaging(0.616) TCGA-BC-A10U-01 20 23431159 23431159 C G CST11 Missense_Mutation p.S134T 0.41 tolerated(0.11) benign(0) TCGA-BC-A10U-01 20 42331511 42331511 C G MYBL2 Missense_Mutation p.P445A 0.32 deleterious(0.01) benign(0.287) TCGA-BC-A10U-01 20 56227217 56227217 C A PMEPA1 Silent p.P252P 0.48 TCGA-BC-A10U-01 2 169018309 169018309 C A STK39 Missense_Mutation p.V206L 0.36 deleterious(0) probably_damaging(0.98) TCGA-BC-A10U-01 2 170440851 170440851 C G PPIG 5'UTR 0.35 TCGA-BC-A10U-01 2 1796112 1796112 T C MYT1L Missense_Mutation p.N1132S 0.37 deleterious(0) probably_damaging(0.968) TCGA-BC-A10U-01 2 190426407 190426407 T G SLC40A1 3'UTR 0.36 TCGA-BC-A10U-01 2 218860 218860 A C SH3YL1 Missense_Mutation p.L327R 0.48 deleterious(0) probably_damaging(0.961) TCGA-BC-A10U-01 2 231861109 231861109 C G SPATA3 Missense_Mutation p.T54R 0.40 tolerated(0.15) possibly_damaging(0.702) TCGA-BC-A10U-01 2 71415460 71415460 T C PAIP2B 3'UTR 0.12 TCGA-BC-A10U-01 2 73456589 73456589 C G PRADC1 Missense_Mutation p.G93A 0.32 deleterious(0.01) probably_damaging(0.987) TCGA-BC-A10U-01 2 73717941 73717941 G C ALMS1 Missense_Mutation p.G2951A 0.38 possibly_damaging(0.857) TCGA-BC-A10U-01 2 85255054 85255054 G A KCMF1 Missense_Mutation p.R20H 0.40 deleterious(0.02) probably_damaging(0.96) TCGA-BC-A10U-01 2 95847630 95847630 G T ZNF2 Missense_Mutation p.D353Y 0.45 tolerated(0.22) benign(0.314) TCGA-BC-A10U-01 2 98373568 98373568 C G TMEM131 Missense_Mutation p.E1882D 0.35 tolerated_low_confidence(0.16) benign(0.011) TCGA-BC-A10U-01 3 111710276 111710279 CTGA - ABHD10 Frame_Shift_Del p.S210* 0.40 TCGA-BC-A10U-01 3 123650008 123650008 T C CCDC14 Missense_Mutation p.I580M 0.38 deleterious(0) possibly_damaging(0.844) TCGA-BC-A10U-01 3 130748574 130748574 G T NEK11 Missense_Mutation p.A8S 0.47 deleterious_low_confidence(0.02) benign(0.293) TCGA-BC-A10U-01 3 138669225 138669225 C T C3orf72 Silent p.L113L 0.43 TCGA-BC-A10U-01 3 167246878 167246878 C T WDR49 Missense_Mutation p.G438R 0.35 deleterious(0) probably_damaging(0.982) TCGA-BC-A10U-01 3 38835301 38835301 A G SCN10A Silent p.Y67Y 0.43 TCGA-BC-A10U-01 3 62739120 62739120 C G CADPS Missense_Mutation p.C295S 0.48 tolerated(0.05) benign(0.152) TCGA-BC-A10U-01 4 113510881 113510881 C G C4orf21 Missense_Mutation p.E1042D 0.70 tolerated(0.44) benign(0.001) TCGA-BC-A10U-01 4 122085259 122085259 T C TNIP3 Missense_Mutation p.T85A 0.33 tolerated(0.1) possibly_damaging(0.467) TCGA-BC-A10U-01 4 134071720 134071720 C A PCDH10 Missense_Mutation p.P142H 0.43 tolerated(0.07) probably_damaging(0.999) TCGA-BC-A10U-01 4 185340688 185340688 G A IRF2 Missense_Mutation p.A41V 0.24 deleterious(0) probably_damaging(0.919) TCGA-BC-A10U-01 4 25353268 25353268 G T ZCCHC4 Missense_Mutation p.R323L 0.38 deleterious(0.01) benign(0.022) TCGA-BC-A10U-01 4 39322038 39322038 G C RFC1 Missense_Mutation p.P354A 0.40 deleterious(0.03) benign(0.302) TCGA-BC-A10U-01 4 84382408 84382408 A C MRPS18C 3'UTR 0.65 TCGA-BC-A10U-01 5 123982848 123982848 A T ZNF608 Missense_Mutation p.S1077T 0.38 tolerated(0.07) probably_damaging(0.986) TCGA-BC-A10U-01 5 126145938 126145938 G T LMNB1 Nonsense_Mutation p.E237* 0.35 TCGA-BC-A10U-01 5 134724771 134724771 C T H2AFY Missense_Mutation p.G5S 0.43 tolerated(0.16) unknown(0) TCGA-BC-A10U-01 5 136314376 136314376 A G SPOCK1 Silent p.D429D 0.42 TCGA-BC-A10U-01 5 140645 140645 C T PLEKHG4B Missense_Mutation p.R75W 0.42 deleterious(0) benign(0.402) TCGA-BC-A10U-01 5 148745666 148745666 C G PCYOX1L Missense_Mutation p.A211G 0.41 deleterious(0.02) probably_damaging(0.935) TCGA-BC-A10U-01 5 176070173 176070173 C A EIF4E1B Missense_Mutation p.P36T 0.37 tolerated_low_confidence(0.57) benign(0.002) TCGA-BC-A10U-01 5 43299071 43299071 G T HMGCS1 5'UTR 0.36 TCGA-BC-A10U-01 6 12162108 12162108 G T HIVEP1 Missense_Mutation p.E2308D 0.25 tolerated(0.87) benign(0.011) TCGA-BC-A10U-01 6 161006134 161006134 A C LPA Silent p.S1411S 0.32 TCGA-BC-A10U-01 6 165715292 165715292 C A C6orf118 Missense_Mutation p.R173S 0.47 deleterious(0.02) benign(0.311) TCGA-BC-A10U-01 6 18215297 18215297 C A KDM1B Silent p.T491T 0.20 TCGA-BC-A10U-01 6 26246995 26246995 C T HIST1H4G Missense_Mutation p.V71M 0.54 deleterious(0.02) possibly_damaging(0.875) TCGA-BC-A10U-01 6 27218524 27218524 G T PRSS16 Missense_Mutation p.S177I 0.23 deleterious(0) benign(0.326) TCGA-BC-A10U-01 6 29080433 29080433 A T OR2J3 Missense_Mutation p.I256F 0.23 deleterious(0.01) possibly_damaging(0.647) TCGA-BC-A10U-01 6 32035476 32035476 C T TNXB Missense_Mutation p.G2169E 0.50 probably_damaging(0.999) TCGA-BC-A10U-01 6 33163892 33163892 C A RXRB Intron 0.19 TCGA-BC-A10U-01 6 38810541 38810541 G A DNAH8 Missense_Mutation p.M1352I 0.22 possibly_damaging(0.58) TCGA-BC-A10U-01 6 4053106 4053106 T C PRPF4B Missense_Mutation p.L822P 0.26 deleterious(0) unknown(0) TCGA-BC-A10U-01 6 47252058 47252058 C T TNFRSF21 Missense_Mutation p.D287N 0.42 tolerated(0.14) benign(0) TCGA-BC-A10U-01 6 70852682 70852682 C T COL19A1 Silent p.S532S 0.41 TCGA-BC-A10U-01 7 100054424 100054425 - G C7orf61 Frame_Shift_Ins p.R191Pfs*24 0.21 TCGA-BC-A10U-01 7 102743978 102743978 C T NAPEPLD Silent p.K360K 0.28 TCGA-BC-A10U-01 7 151884488 151884488 C A KMT2C Nonsense_Mutation p.E1623* 0.54 TCGA-BC-A10U-01 7 17908059 17908059 C G SNX13 Missense_Mutation p.D270H 0.32 deleterious(0) probably_damaging(0.999) TCGA-BC-A10U-01 7 20199410 20199410 A T MACC1 Missense_Mutation p.C192S 0.26 deleterious(0) probably_damaging(0.997) TCGA-BC-A10U-01 7 63726562 63726562 T G ZNF679 Missense_Mutation p.F184C 0.55 deleterious(0.02) possibly_damaging(0.594) TCGA-BC-A10U-01 7 98506458 98506458 A G TRRAP Missense_Mutation p.D408G 0.28 benign(0.004) TCGA-BC-A10U-01 7 99686935 99686935 C T COPS6 Silent p.C33C 0.36 TCGA-BC-A10U-01 8 109229595 109229595 C A EIF3E Missense_Mutation p.V273F 0.26 tolerated(0.33) benign(0.391) TCGA-BC-A10U-01 8 133925494 133925494 G C TG Missense_Mutation p.Q1454H 0.35 tolerated(0.17) possibly_damaging(0.547) TCGA-BC-A10U-01 8 145101782 145101782 C T SPATC1 Silent p.L567L 0.39 TCGA-BC-A10U-01 8 41573290 41573290 G - ANK1 Frame_Shift_Del p.N528Tfs*38 0.40 TCGA-BC-A10U-01 9 130442485 130442485 C T STXBP1 Missense_Mutation p.T504I 0.76 tolerated(0.13) possibly_damaging(0.572) TCGA-BC-A10U-01 9 140907618 140907618 T C CACNA1B Missense_Mutation p.L733P 0.09 deleterious(0.02) benign(0) TCGA-BC-A10U-01 9 21455809 21455809 C A MIR31HG RNA 0.36 TCGA-BC-A10U-01 9 36123240 36123240 G A RECK 3'UTR 0.90 TCGA-BC-A10U-01 X 100513348 100513348 C G DRP2 Missense_Mutation p.A814G 0.65 tolerated(1) benign(0.002) TCGA-BC-A10U-01 X 127185963 127185963 C T ACTRT1 Missense_Mutation p.E75K 0.65 deleterious(0.04) benign(0.029) TCGA-BC-A10U-01 X 154299926 154299926 G A BRCC3 Splice_Site p.X41_splice 0.24 TCGA-BC-A10U-01 X 155004697 155004697 G T SPRY3 3'UTR 0.23 TCGA-BC-A10U-01 X 24227055 24227104 GCAAGTGCCCTCTTGCACATAGATGAGTCTGCTGGCCTCGGCAGACTGGC - ZFX Frame_Shift_Del p.A378* 0.80 TCGA-BC-A10U-01 X 26212997 26212997 G C MAGEB6 Missense_Mutation p.R345P 0.75 deleterious(0.01) benign(0.336) TCGA-BC-A10U-01 X 36122659 36122659 T C CHDC2 Missense_Mutation p.M299T 0.04 tolerated(0.19) benign(0.013) TCGA-BC-A10W-01 10 118310666 118310666 C T PNLIP Silent p.S127S 0.53 TCGA-BC-A10W-01 10 21074701 21074701 G A NEBL Missense_Mutation p.A1007V 0.33 deleterious(0) probably_damaging(0.999) TCGA-BC-A10W-01 10 63999451 63999451 C A RTKN2 Silent p.V148V 0.05 TCGA-BC-A10W-01 11 108127032 108127032 G T ATM Nonsense_Mutation p.E739* 0.39 TCGA-BC-A10W-01 11 5730736 5730736 G A TRIM22 Missense_Mutation p.G452D 0.26 tolerated(0.11) probably_damaging(0.984) TCGA-BC-A10W-01 11 64806100 64806100 T A SNX15 Missense_Mutation p.S241T 0.33 tolerated(0.48) benign(0.001) TCGA-BC-A10W-01 11 8664672 8664672 A G TRIM66 Missense_Mutation p.I222T 0.45 deleterious(0) probably_damaging(0.976) TCGA-BC-A10W-01 12 1009715 1009715 A C WNK1 Silent p.P2174P 0.43 TCGA-BC-A10W-01 12 107712667 107712667 C A BTBD11 5'UTR 0.47 TCGA-BC-A10W-01 12 4543378 4543378 T C FGF6 3'UTR 0.33 TCGA-BC-A10W-01 12 53202117 53202117 G T KRT4 Silent p.I362I 0.15 TCGA-BC-A10W-01 13 28498632 28498632 G A PDX1 Missense_Mutation p.G216R 0.23 tolerated(0.1) benign(0.203) TCGA-BC-A10W-01 13 48939032 48939033 - A RB1 Frame_Shift_Ins p.N290Kfs*20 0.33 TCGA-BC-A10W-01 13 95887013 95887013 A C ABCC4 Missense_Mutation p.S128A 0.24 tolerated(0.26) benign(0.003) TCGA-BC-A10W-01 14 21552186 21552186 G A ARHGEF40 Missense_Mutation p.V1256M 0.36 tolerated(1) benign(0.156) TCGA-BC-A10W-01 14 24877718 24877718 C A NYNRIN Missense_Mutation p.A281E 0.27 deleterious_low_confidence(0.04) benign(0.424) TCGA-BC-A10W-01 14 58937380 58937380 T A KIAA0586 Missense_Mutation p.V884D 0.15 tolerated(0.16) benign(0.268) TCGA-BC-A10W-01 14 64596547 64596547 G A SYNE2 Silent p.V4689V 0.38 TCGA-BC-A10W-01 14 67671395 67671395 G A FAM71D Nonsense_Mutation p.W167* 0.38 TCGA-BC-A10W-01 14 73437723 73437723 T C ZFYVE1 Missense_Mutation p.K734R 0.33 deleterious(0.03) benign(0.199) TCGA-BC-A10W-01 14 78021725 78021725 A T SPTLC2 Missense_Mutation p.L365Q 0.34 deleterious(0.01) probably_damaging(0.964) TCGA-BC-A10W-01 14 93118696 93118696 G A RIN3 Silent p.Q434Q 0.30 TCGA-BC-A10W-01 16 19567048 19567048 G T C16orf62 Silent p.G88G 0.39 TCGA-BC-A10W-01 16 21995822 21995823 - T PDZD9 Frame_Shift_Ins p.H127Qfs*4 0.22 TCGA-BC-A10W-01 16 31284710 31284710 C T ITGAM Silent p.N243N 0.17 TCGA-BC-A10W-01 17 10369612 10369612 C A MYH4 Missense_Mutation p.R109L 0.33 deleterious(0.01) probably_damaging(0.993) TCGA-BC-A10W-01 17 39274012 39274012 G A KRTAP4-11 Missense_Mutation p.R186C 0.57 deleterious(0.01) unknown(0) TCGA-BC-A10W-01 17 56585600 56585600 G A MTMR4 Missense_Mutation p.P196L 0.18 deleterious(0) probably_damaging(1) TCGA-BC-A10W-01 17 60765748 60765748 A T MRC2 Silent p.T1015T 0.45 TCGA-BC-A10W-01 17 61556398 61556398 A G ACE Missense_Mutation p.I150V 0.47 tolerated(0.12) benign(0.002) TCGA-BC-A10W-01 17 6905064 6905064 C T ALOX12 Silent p.H365H 0.23 TCGA-BC-A10W-01 17 7145590 7145610 CTTCTCGCCCTCAGAGCGGCG - GABARAP In_Frame_Del p.R14_K20del 0.08 TCGA-BC-A10W-01 17 72342619 72342619 A C KIF19 Missense_Mutation p.K294Q 0.56 tolerated(0.17) possibly_damaging(0.688) TCGA-BC-A10W-01 17 72741727 72741727 C A RAB37 3'UTR 0.29 TCGA-BC-A10W-01 17 74287960 74287960 C T QRICH2 Missense_Mutation p.D784N 0.27 deleterious(0.03) benign(0.158) TCGA-BC-A10W-01 17 74465897 74465897 G A AANAT Missense_Mutation p.A202T 0.08 tolerated(0.07) benign(0.024) TCGA-BC-A10W-01 17 76183419 76183419 A G AFMID 5'Flank 0.30 TCGA-BC-A10W-01 17 76198608 76198608 G A AFMID Silent p.K61K 0.56 TCGA-BC-A10W-01 17 7750726 7750726 A G KDM6B Missense_Mutation p.S405G 0.08 unknown(0) TCGA-BC-A10W-01 17 80356196 80356196 C A OGFOD3 Splice_Site p.X234_splice 0.23 TCGA-BC-A10W-01 18 54293689 54293689 C A TXNL1 Splice_Site p.X33_splice 0.31 TCGA-BC-A10W-01 18 67992658 67992658 G A SOCS6 Missense_Mutation p.A252T 0.37 tolerated_low_confidence(0.44) benign(0.002) TCGA-BC-A10W-01 19 17373479 17373479 C T USHBP1 Missense_Mutation p.R175H 0.67 tolerated(0.21) benign(0.015) TCGA-BC-A10W-01 19 43372015 43372015 C T PSG1 3'UTR 0.38 TCGA-BC-A10W-01 19 44833097 44833097 C T ZNF112 Missense_Mutation p.E411K 0.34 tolerated(0.11) benign(0.024) TCGA-BC-A10W-01 19 50209501 50209501 C A CPT1C Missense_Mutation p.Q392K 0.23 tolerated(0.77) benign(0.209) TCGA-BC-A10W-01 19 54697194 54697194 C G TSEN34 Missense_Mutation p.L304V 0.20 deleterious(0) possibly_damaging(0.831) TCGA-BC-A10W-01 19 9062181 9062181 C T MUC16 Missense_Mutation p.S8422N 0.60 unknown(0) TCGA-BC-A10W-01 1 103364262 103364262 T A COL11A1 Missense_Mutation p.K1403M 0.14 unknown(0) TCGA-BC-A10W-01 1 110656386 110656386 C T UBL4B 3'UTR 0.18 TCGA-BC-A10W-01 1 112042758 112042758 A T ADORA3 Intron 0.05 TCGA-BC-A10W-01 1 120539927 120539927 G A NOTCH2 Silent p.C148C 0.68 TCGA-BC-A10W-01 1 145283156 145283156 A G NOTCH2NL 3'UTR 0.34 TCGA-BC-A10W-01 1 145497479 145497479 G A LIX1L Silent p.L228L 0.13 TCGA-BC-A10W-01 1 145530929 145530929 G T ITGA10 Missense_Mutation p.D221Y 0.04 deleterious(0) probably_damaging(0.992) TCGA-BC-A10W-01 1 150778691 150778691 T C CTSK Missense_Mutation p.I44V 0.77 tolerated(0.65) benign(0) TCGA-BC-A10W-01 1 152748869 152748869 C A LCE1F Missense_Mutation p.Q8K 0.76 tolerated_low_confidence(0.78) unknown(0) TCGA-BC-A10W-01 1 22141047 22141047 T A LDLRAD2 Missense_Mutation p.F81Y 0.09 deleterious(0) possibly_damaging(0.852) TCGA-BC-A10W-01 1 26514760 26514760 A G CNKSR1 Missense_Mutation p.Y497C 0.54 deleterious(0) probably_damaging(0.999) TCGA-BC-A10W-01 1 27056354 27056354 G A ARID1A Silent p.Q450Q 0.57 TCGA-BC-A10W-01 1 29641992 29641992 C T PTPRU Silent p.S1122S 0.56 TCGA-BC-A10W-01 1 33478978 33478978 C T AK2 Missense_Mutation p.R175Q 0.42 deleterious(0.01) benign(0.095) TCGA-BC-A10W-01 20 32856830 32856830 C A ASIP Silent p.R86R 0.49 TCGA-BC-A10W-01 20 33337355 33337355 C T NCOA6 Silent p.T881T 0.38 TCGA-BC-A10W-01 20 36687860 36687860 G C RPRD1B Missense_Mutation p.R198P 0.36 deleterious(0) probably_damaging(0.993) TCGA-BC-A10W-01 20 43977033 43977033 G A SDC4 5'UTR 0.28 TCGA-BC-A10W-01 20 49576556 49576556 A T MOCS3 Missense_Mutation p.I393F 0.39 tolerated(0.09) benign(0.026) TCGA-BC-A10W-01 20 5987924 5987945 CAGATCCTGGCAGGGGTCTCAA - CRLS1 Intron 0.34 TCGA-BC-A10W-01 21 11049535 11049535 G C BAGE2 RNA 0.07 TCGA-BC-A10W-01 22 22707509 22707509 C A IGLV5-48 Missense_Mutation p.P33T 0.21 tolerated(0.17) benign(0.396) TCGA-BC-A10W-01 22 22707510 22707510 C A IGLV5-48 Missense_Mutation p.P33H 0.23 deleterious(0.02) possibly_damaging(0.846) TCGA-BC-A10W-01 22 28193394 28193394 C T MN1 Silent p.S1046S 0.30 TCGA-BC-A10W-01 22 29538108 29538108 A G KREMEN1 Intron 0.09 TCGA-BC-A10W-01 22 38121089 38121089 T A TRIOBP Missense_Mutation p.D842E 0.39 tolerated_low_confidence(0.28) benign(0.008) TCGA-BC-A10W-01 2 11587894 11587894 T C E2F6 Missense_Mutation p.I220V 0.39 tolerated(0.16) benign(0.008) TCGA-BC-A10W-01 2 127958787 127958787 T G CYP27C1 Missense_Mutation p.Y100S 0.34 tolerated(0.1) probably_damaging(0.993) TCGA-BC-A10W-01 2 128522284 128522336 GTGCAGAAAGTTTCCCAGAAACTGACAGAGCCCATGCATCTCTGCACCCAGAA - WDR33 Intron 0.35 TCGA-BC-A10W-01 2 132241632 132241632 T A MZT2A 3'UTR 0.32 TCGA-BC-A10W-01 2 164466794 164466794 C A FIGN Silent p.T516T 0.36 TCGA-BC-A10W-01 2 165552127 165552127 T C COBLL1 Missense_Mutation p.N630S 0.35 tolerated(0.11) benign(0.021) TCGA-BC-A10W-01 2 166003251 166003251 G T SCN3A Missense_Mutation p.Q557K 0.42 tolerated(0.06) possibly_damaging(0.647) TCGA-BC-A10W-01 2 170031784 170031784 C T LRP2 Missense_Mutation p.G3563S 0.43 probably_damaging(0.998) TCGA-BC-A10W-01 2 209217489 209217489 G T PIKFYVE Missense_Mutation p.G1943W 0.32 deleterious(0) probably_damaging(0.996) TCGA-BC-A10W-01 2 209217490 209217490 G C PIKFYVE Missense_Mutation p.G1943A 0.31 tolerated(0.24) possibly_damaging(0.586) TCGA-BC-A10W-01 2 220194423 220194423 C A RESP18 Missense_Mutation p.R134I 0.30 deleterious_low_confidence(0) possibly_damaging(0.785) TCGA-BC-A10W-01 2 233344956 233344956 C A ECEL1 Silent p.L745L 0.47 TCGA-BC-A10W-01 2 234431822 234431822 T C USP40 Missense_Mutation p.D743G 0.31 tolerated(0.1) benign(0.012) TCGA-BC-A10W-01 2 61706090 61706090 A C XPO1 Silent p.G1027G 0.30 TCGA-BC-A10W-01 2 75113635 75113635 G T HK2 Missense_Mutation p.C685F 0.40 deleterious(0) probably_damaging(1) TCGA-BC-A10W-01 2 9628439 9628439 T G IAH1 Missense_Mutation p.L243R 0.39 deleterious(0.02) benign(0.167) TCGA-BC-A10W-01 2 96579927 96579927 G A ANKRD36C Missense_Mutation p.A827V 0.43 tolerated_low_confidence(0.39) possibly_damaging(0.494) TCGA-BC-A10W-01 3 124720775 124720775 C G HEG1 Missense_Mutation p.R1146S 0.32 tolerated(0.8) benign(0.012) TCGA-BC-A10W-01 3 137880850 137880850 T A DBR1 Missense_Mutation p.T506S 0.35 tolerated(0.55) benign(0) TCGA-BC-A10W-01 3 171965470 171965470 C T FNDC3B Missense_Mutation p.H138Y 0.38 tolerated(1) possibly_damaging(0.885) TCGA-BC-A10W-01 3 37053518 37053518 C G MLH1 Missense_Mutation p.A202G 0.31 tolerated(0.13) benign(0.008) TCGA-BC-A10W-01 3 9847942 9847942 A G ARPC4 3'UTR 0.34 TCGA-BC-A10W-01 4 104053878 104053878 A T CENPE Missense_Mutation p.V2299E 0.38 possibly_damaging(0.559) TCGA-BC-A10W-01 4 149073680 149073680 C A NR3C2 Missense_Mutation p.R817I 0.33 deleterious(0.01) possibly_damaging(0.671) TCGA-BC-A10W-01 4 69097023 69097023 G - TMPRSS11B Frame_Shift_Del p.A195Dfs*20 0.29 TCGA-BC-A10W-01 4 88035706 88035706 C A AFF1 Missense_Mutation p.S574Y 0.28 deleterious(0.02) unknown(0) TCGA-BC-A10W-01 4 94006348 94006348 T G GRID2 Silent p.P149P 0.39 TCGA-BC-A10W-01 5 128369105 128369105 T C SLC27A6 3'UTR 0.24 TCGA-BC-A10W-01 5 129070694 129070694 C A ADAMTS19 Missense_Mutation p.H1122N 0.46 deleterious(0.03) probably_damaging(0.997) TCGA-BC-A10W-01 5 132209684 132209685 - G LEAP2 Frame_Shift_Ins p.P35Afs*23 0.30 TCGA-BC-A10W-01 5 149737291 149737291 C G TCOF1 5'Flank 0.26 TCGA-BC-A10W-01 5 161576259 161576259 G - GABRG2 Frame_Shift_Del p.L396Ffs*44 0.19 TCGA-BC-A10W-01 5 161580269 161580269 G A GABRG2 Silent p.R481R 0.28 TCGA-BC-A10W-01 5 32444759 32444759 A C ZFR Missense_Mutation p.I2M 0.11 deleterious_low_confidence(0) possibly_damaging(0.703) TCGA-BC-A10W-01 5 68467214 68467214 G A CCNB1 Missense_Mutation p.G161R 0.32 tolerated(0.37) benign(0.04) TCGA-BC-A10W-01 6 134212868 134212868 G A TCF21 Silent p.V156V 0.48 TCGA-BC-A10W-01 6 145093056 145093056 A G UTRN Missense_Mutation p.T2837A 0.10 deleterious(0) probably_damaging(0.986) TCGA-BC-A10W-01 6 146720308 146720308 A T GRM1 Silent p.S711S 0.36 TCGA-BC-A10W-01 6 154412235 154412235 C A OPRM1 Silent p.V357V 0.35 TCGA-BC-A10W-01 6 158438296 158438296 G A SYNJ2 Missense_Mutation p.C63Y 0.11 deleterious(0) probably_damaging(0.993) TCGA-BC-A10W-01 6 16145168 16145168 C A MYLIP Missense_Mutation p.R290S 0.31 deleterious(0) probably_damaging(0.956) TCGA-BC-A10W-01 6 28543241 28543241 G C SCAND3 Missense_Mutation p.P414R 0.38 deleterious_low_confidence(0) benign(0.331) TCGA-BC-A10W-01 6 31129627 31129627 G T TCF19 Silent p.T214T 0.16 TCGA-BC-A10W-01 6 31922613 31922613 T C NELFE Missense_Mutation p.E154G 0.19 tolerated_low_confidence(0.09) benign(0.18) TCGA-BC-A10W-01 6 31938796 31938796 A G DXO Missense_Mutation p.L162P 0.42 deleterious(0) probably_damaging(0.978) TCGA-BC-A10W-01 6 33261661 33261661 G C RGL2 Silent p.L473L 0.37 TCGA-BC-A10W-01 6 36564637 36564637 A G SRSF3 Missense_Mutation p.Y33C 0.31 deleterious(0.01) probably_damaging(0.967) TCGA-BC-A10W-01 6 74072866 74072866 T A KHDC3L Nonsense_Mutation p.L73* 0.38 TCGA-BC-A10W-01 7 128517213 128517213 C T KCP RNA 0.29 TCGA-BC-A10W-01 7 135421867 135421867 C T FAM180A Missense_Mutation p.E53K 0.51 deleterious(0.01) possibly_damaging(0.547) TCGA-BC-A10W-01 7 151962208 151962208 G C KMT2C Missense_Mutation p.H367D 0.07 probably_damaging(0.997) TCGA-BC-A10W-01 7 157369373 157369373 C A PTPRN2 Missense_Mutation p.Q905H 0.32 deleterious(0) probably_damaging(1) TCGA-BC-A10W-01 7 23296941 23296941 T A GPNMB Intron 0.56 TCGA-BC-A10W-01 7 27868442 27868442 T C TAX1BP1 Silent p.F788F 0.11 TCGA-BC-A10W-01 7 44552966 44552966 T C NPC1L1 3'UTR 0.09 TCGA-BC-A10W-01 7 53104593 53104593 G C POM121L12 3'UTR 0.41 TCGA-BC-A10W-01 7 86569424 86569424 A G KIAA1324L Missense_Mutation p.L250P 0.31 deleterious(0) probably_damaging(1) TCGA-BC-A10W-01 8 144644902 144644902 T C GSDMD Missense_Mutation p.L428P 0.70 deleterious(0.04) benign(0.376) TCGA-BC-A10W-01 8 144644913 144644913 T A GSDMD Missense_Mutation p.W432R 0.68 tolerated(0.1) probably_damaging(1) TCGA-BC-A10W-01 8 144919472 144919473 - TGGCA NRBP2 Splice_Site p.X359_splice 0.18 TCGA-BC-A10W-01 8 145730179 145730179 A T GPT Missense_Mutation p.D93V 0.09 tolerated(0.05) benign(0.281) TCGA-BC-A10W-01 8 27320514 27320514 A G CHRNA2 Silent p.S482S 0.23 TCGA-BC-A10W-01 8 28574774 28574774 T C EXTL3 Missense_Mutation p.C400R 0.41 deleterious(0) probably_damaging(0.989) TCGA-BC-A10W-01 8 73849371 73849371 T A KCNB2 Missense_Mutation p.I594N 0.72 deleterious_low_confidence(0) possibly_damaging(0.701) TCGA-BC-A10W-01 8 8998473 8998473 T C PPP1R3B Missense_Mutation p.Y230C 0.38 deleterious(0) probably_damaging(1) TCGA-BC-A10W-01 8 91643868 91643868 A G TMEM64 Missense_Mutation p.L288P 0.17 deleterious(0) probably_damaging(0.999) TCGA-BC-A10W-01 8 92261829 92261830 - T SLC26A7 5'UTR 0.19 TCGA-BC-A10W-01 9 113563239 113563239 G T MUSK Nonsense_Mutation p.E861* 0.37 TCGA-BC-A10W-01 9 115449564 115449564 T C INIP 3'UTR 0.50 TCGA-BC-A10W-01 9 19070270 19070270 A G HAUS6 Silent p.N441N 0.36 TCGA-BC-A10W-01 9 5126358 5126358 A G JAK2 Missense_Mutation p.D1068G 0.32 tolerated(0.08) possibly_damaging(0.906) TCGA-BC-A10W-01 9 5300172 5300172 G T RLN2 Missense_Mutation p.Q162K 0.34 tolerated(0.07) benign(0.025) TCGA-BC-A10W-01 9 6482012 6482012 T G UHRF2 Silent p.R435R 0.35 TCGA-BC-A10W-01 X 20074814 20074814 T C MAP7D2 Silent p.G156G 0.08 TCGA-BC-A10W-01 X 57621612 57621612 A T ZXDB 3'UTR 0.73 TCGA-BC-A10X-01 16 15961098 15961098 T - FOPNL 3'UTR 0.27 TCGA-BC-A10X-01 1 248366692 248366692 T C OR2M3 Missense_Mutation p.L108P 0.05 tolerated(0.21) possibly_damaging(0.527) TCGA-BC-A10X-01 6 43223474 43223474 G A TTBK1 Silent p.Q247Q 0.11 TCGA-BC-A10X-01 7 33192380 33192380 A G BBS9 Silent p.G60G 0.10 TCGA-BC-A10X-01 8 72967784 72967784 C T TRPA1 Silent p.T472T 0.05 TCGA-BC-A10Y-01 10 64952867 64952867 G A JMJD1C Silent p.C1969C 0.43 TCGA-BC-A10Y-01 11 124747395 124747395 G A ROBO3 Intron 0.51 TCGA-BC-A10Y-01 11 608299 608299 C T PHRF1 Missense_Mutation p.S947F 0.43 deleterious(0.05) probably_damaging(0.932) TCGA-BC-A10Y-01 12 53294400 53294400 A G KRT8 Missense_Mutation p.I249T 0.09 deleterious(0.01) probably_damaging(0.976) TCGA-BC-A10Y-01 12 57032145 57032145 C T ATP5B Missense_Mutation p.A518T 0.38 tolerated_low_confidence(0.08) benign(0.001) TCGA-BC-A10Y-01 13 26153014 26153014 A G ATP8A2 Missense_Mutation p.H615R 0.41 deleterious(0) possibly_damaging(0.784) TCGA-BC-A10Y-01 13 32914712 32914712 C G BRCA2 Missense_Mutation p.H2074D 0.41 tolerated(0.17) benign(0.138) TCGA-BC-A10Y-01 13 36049710 36049710 A G MAB21L1 Missense_Mutation p.L189P 0.39 tolerated(0.27) benign(0.008) TCGA-BC-A10Y-01 13 36385025 36385025 G T DCLK1 Nonsense_Mutation p.Y545* 0.44 TCGA-BC-A10Y-01 14 20249191 20249191 G A OR4M1 Missense_Mutation p.R237K 0.43 tolerated(1) benign(0.002) TCGA-BC-A10Y-01 14 50140883 50140883 A G POLE2 Silent p.D125D 0.46 TCGA-BC-A10Y-01 14 52520942 52520942 C T NID2 Missense_Mutation p.A289T 0.38 tolerated(0.69) benign(0) TCGA-BC-A10Y-01 14 67646366 67646366 A T GPHN Missense_Mutation p.E717D 0.46 tolerated(0.35) probably_damaging(0.937) TCGA-BC-A10Y-01 14 91770248 91770248 C T CCDC88C Silent p.T1144T 0.43 TCGA-BC-A10Y-01 15 29346830 29346830 C T APBA2 Missense_Mutation p.A248V 0.46 tolerated_low_confidence(0.12) benign(0.103) TCGA-BC-A10Y-01 15 74709733 74709733 G A SEMA7A Missense_Mutation p.R202W 0.23 deleterious(0) probably_damaging(0.997) TCGA-BC-A10Y-01 15 78472115 78472136 TCAGGTCGCTGGTGGGAGAGGG - ACSBG1 Splice_Site p.X418_splice 0.18 TCGA-BC-A10Y-01 15 93007604 93007604 G T ST8SIA2 Missense_Mutation p.G373W 0.29 possibly_damaging(0.854) TCGA-BC-A10Y-01 16 20826252 20826252 G T AC004381.6 Missense_Mutation p.W85C 0.40 deleterious(0) probably_damaging(1) TCGA-BC-A10Y-01 16 21636425 21636425 A G METTL9 Missense_Mutation p.Y247C 0.33 tolerated(0.11) benign(0.297) TCGA-BC-A10Y-01 16 29820038 29820038 C T MAZ Missense_Mutation p.H419Y 0.44 tolerated(0.09) possibly_damaging(0.607) TCGA-BC-A10Y-01 16 30594358 30594358 C - ZNF785 Frame_Shift_Del p.R247Sfs*183 0.45 TCGA-BC-A10Y-01 16 84486812 84486812 A T ATP2C2 Nonsense_Mutation p.K634* 0.44 TCGA-BC-A10Y-01 16 84623756 84623756 G A COTL1 Silent p.R91R 0.51 TCGA-BC-A10Y-01 16 90124502 90124502 A T PRDM7 3'UTR 0.35 TCGA-BC-A10Y-01 17 19705133 19705133 C A ULK2 Missense_Mutation p.R466S 0.36 deleterious(0) probably_damaging(0.997) TCGA-BC-A10Y-01 17 41063222 41063222 A G G6PC Missense_Mutation p.K285E 0.41 deleterious(0.04) benign(0.089) TCGA-BC-A10Y-01 17 61994712 61994712 C T GH1 Missense_Mutation p.R204H 0.28 tolerated(0.07) benign(0.061) TCGA-BC-A10Y-01 19 10385686 10385686 A G ICAM1 Missense_Mutation p.T105A 0.55 tolerated(0.68) benign(0.006) TCGA-BC-A10Y-01 19 19756558 19756558 C T ATP13A1 Silent p.L1134L 0.60 TCGA-BC-A10Y-01 19 38383656 38383656 G A WDR87 Missense_Mutation p.T857I 0.48 probably_damaging(0.988) TCGA-BC-A10Y-01 19 39322054 39322054 T C ECH1 Missense_Mutation p.D52G 0.44 tolerated(0.67) benign(0.001) TCGA-BC-A10Y-01 19 55805701 55805701 A G BRSK1 Missense_Mutation p.E205G 0.08 deleterious(0) possibly_damaging(0.728) TCGA-BC-A10Y-01 19 6420136 6420136 T C KHSRP Silent p.E165E 0.38 TCGA-BC-A10Y-01 1 151414583 151414583 T C POGZ Missense_Mutation p.Y33C 0.33 tolerated(0.08) probably_damaging(0.94) TCGA-BC-A10Y-01 1 216496858 216496858 C T USH2A Missense_Mutation p.R503K 0.29 benign(0.075) TCGA-BC-A10Y-01 1 23240064 23240064 C T EPHB2 3'UTR 0.56 TCGA-BC-A10Y-01 1 32162651 32162651 C G COL16A1 Missense_Mutation p.Q259H 0.45 unknown(0) TCGA-BC-A10Y-01 1 32196897 32196897 A T BAI2 Missense_Mutation p.F1295Y 0.47 tolerated(0.23) probably_damaging(0.991) TCGA-BC-A10Y-01 1 75602325 75602325 C T LHX8 Missense_Mutation p.T19I 0.48 deleterious_low_confidence(0.01) benign(0.002) TCGA-BC-A10Y-01 1 94643007 94643007 T C ARHGAP29 Intron 0.47 TCGA-BC-A10Y-01 20 17596122 17596122 G A RRBP1 Missense_Mutation p.A902V 0.45 tolerated(0.13) possibly_damaging(0.682) TCGA-BC-A10Y-01 20 23856740 23856740 G T CST5 3'UTR 0.50 TCGA-BC-A10Y-01 20 34022500 34022500 T A GDF5 Missense_Mutation p.E238V 0.38 deleterious(0) probably_damaging(0.937) TCGA-BC-A10Y-01 21 45092191 45092191 A G RRP1B Silent p.E72E 0.47 TCGA-BC-A10Y-01 2 1079315 1079315 G T SNTG2 Missense_Mutation p.V62L 0.43 tolerated(0.07) benign(0.004) TCGA-BC-A10Y-01 2 116510776 116510776 G T DPP10 Missense_Mutation p.W330L 0.38 deleterious(0) probably_damaging(1) TCGA-BC-A10Y-01 2 153575132 153575132 T G ARL6IP6 5'UTR 0.46 TCGA-BC-A10Y-01 2 239134254 239134254 G A AC016757.3 Intron 0.42 TCGA-BC-A10Y-01 2 31751181 31751181 A G AL133247.2 5'Flank 0.70 TCGA-BC-A10Y-01 2 58373591 58373591 G C VRK2 Missense_Mutation p.M388I 0.41 tolerated(0.31) benign(0.001) TCGA-BC-A10Y-01 2 5837623 5837623 C G SOX11 3'UTR 0.61 TCGA-BC-A10Y-01 2 80085161 80085161 C T CTNNA2 Silent p.S107S 0.43 TCGA-BC-A10Y-01 3 111432938 111432938 G T PLCXD2 Missense_Mutation p.G277C 0.49 deleterious(0.02) probably_damaging(0.935) TCGA-BC-A10Y-01 3 118909118 118909118 T A UPK1B Nonsense_Mutation p.Y99* 0.40 TCGA-BC-A10Y-01 3 129252455 129252455 G A RHO Missense_Mutation p.R314Q 0.47 tolerated(0.06) probably_damaging(0.982) TCGA-BC-A10Y-01 3 44489484 44489484 C A ZNF445 Missense_Mutation p.R560L 0.12 deleterious(0.02) benign(0.25) TCGA-BC-A10Y-01 3 45988614 45988614 T C CXCR6 Missense_Mutation p.I214T 0.40 deleterious(0) probably_damaging(1) TCGA-BC-A10Y-01 4 69535667 69535667 A G UGT2B15 Missense_Mutation p.W224R 0.80 deleterious(0.01) benign(0.111) TCGA-BC-A10Y-01 5 156899886 156899886 A G NIPAL4 Missense_Mutation p.K440R 0.39 tolerated(0.12) probably_damaging(0.999) TCGA-BC-A10Y-01 5 168119629 168119629 G A SLIT3 Silent p.P1053P 0.09 TCGA-BC-A10Y-01 6 2959566 2959566 T C SERPINB6 Translation_Start_Site p.M1? 0.42 deleterious(0) possibly_damaging(0.799) TCGA-BC-A10Y-01 6 3119733 3119733 T A BPHL Intron 0.31 TCGA-BC-A10Y-01 6 75866190 75866190 T C COL12A1 Silent p.T1011T 0.42 TCGA-BC-A10Y-01 6 82462171 82462171 G A FAM46A 5'UTR 0.35 TCGA-BC-A10Y-01 6 97246206 97246206 A C GPR63 3'UTR 0.50 TCGA-BC-A10Y-01 6 99285586 99285586 T C POU3F2 3'UTR 0.49 TCGA-BC-A10Y-01 6 99285602 99285602 T C POU3F2 3'UTR 0.52 TCGA-BC-A10Y-01 7 107688358 107688358 T C LAMB4 Missense_Mutation p.N1441D 0.45 tolerated(0.06) possibly_damaging(0.698) TCGA-BC-A10Y-01 7 107866734 107866734 G A NRCAM Silent p.R213R 0.44 TCGA-BC-A10Y-01 7 151873592 151873592 A C KMT2C Silent p.V2982V 0.40 TCGA-BC-A10Y-01 7 16298092 16298092 A T ISPD Missense_Mutation p.F348I 0.39 tolerated(0.26) benign(0.003) TCGA-BC-A10Y-01 7 550578 550578 C T PDGFA Silent p.R107R 0.45 TCGA-BC-A10Y-01 7 82464992 82464992 T C PCLO Missense_Mutation p.Q4747R 0.48 unknown(0) TCGA-BC-A10Y-01 7 99017484 99017484 C T ATP5J2-PTCD1 3'UTR 0.46 TCGA-BC-A10Y-01 8 123965265 123965265 C A ZHX2 Silent p.S505S 0.41 TCGA-BC-A10Y-01 8 64099147 64099147 G T YTHDF3 Missense_Mutation p.G192V 0.41 deleterious(0) probably_damaging(0.996) TCGA-BC-A10Y-01 9 125273978 125273978 G A OR1J2 Missense_Mutation p.A300T 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.45) TCGA-BC-A10Y-01 9 139234260 139234260 G A GPSM1 Silent p.Q357Q 0.31 TCGA-BC-A10Y-01 9 139732077 139732077 G A RABL6 Silent p.G364G 0.30 TCGA-BC-A10Y-01 9 140001761 140001761 C T MAN1B1 Silent p.P542P 0.32 TCGA-BC-A10Y-01 9 77416900 77416900 C T TRPM6 Silent p.A641A 0.42 TCGA-BC-A10Y-01 9 98268744 98268744 C A PTCH1 Silent p.A113A 0.45 TCGA-BC-A10Y-01 X 147744245 147744245 T A AFF2 Missense_Mutation p.S333T 0.94 tolerated(0.53) benign(0.009) TCGA-BC-A10Y-01 X 19410152 19410152 G A MAP3K15 Missense_Mutation p.A800V 0.89 deleterious(0.04) benign(0.238) TCGA-BC-A10Y-01 X 24084190 24084190 T C EIF2S3 Missense_Mutation p.I283T 0.89 deleterious(0) probably_damaging(0.918) TCGA-BC-A10Y-01 X 2729446 2729446 C G XG Missense_Mutation p.A175G 0.91 deleterious(0.02) possibly_damaging(0.866) TCGA-BC-A10Y-01 X 56592288 56592288 A G UBQLN2 3'UTR 0.91 TCGA-BC-A10Y-01 Y 4925278 4925278 C T PCDH11Y Silent p.C138C 0.83 TCGA-BC-A10Z-01 10 121337034 121337034 T - TIAL1 Frame_Shift_Del p.R239Sfs*13 0.29 TCGA-BC-A10Z-01 10 127708372 127708372 G - ADAM12 Frame_Shift_Del p.P854Lfs*85 0.35 TCGA-BC-A10Z-01 10 134660574 134660574 T A TTC40 Silent p.S2043S 0.37 TCGA-BC-A10Z-01 10 18145281 18145281 A T MRC1 Missense_Mutation p.K506N 0.93 deleterious(0.02) possibly_damaging(0.69) TCGA-BC-A10Z-01 10 18331893 18331893 A T SLC39A12 3'UTR 0.80 TCGA-BC-A10Z-01 10 54048601 54048601 C T PRKG1 Silent p.L609L 0.47 TCGA-BC-A10Z-01 10 61413875 61413875 G T SLC16A9 Missense_Mutation p.N303K 0.43 deleterious(0) probably_damaging(0.969) TCGA-BC-A10Z-01 10 71136836 71136836 C T HK1 Missense_Mutation p.A345V 0.38 deleterious(0.05) possibly_damaging(0.697) TCGA-BC-A10Z-01 11 10651167 10651167 C A MRVI1 Silent p.L164L 0.47 TCGA-BC-A10Z-01 11 130058534 130058534 C T ST14 Silent p.A117A 0.46 TCGA-BC-A10Z-01 11 46895257 46895257 G A LRP4 Intron 0.68 TCGA-BC-A10Z-01 11 46896621 46896621 C T LRP4 Missense_Mutation p.C1320Y 0.38 deleterious(0) probably_damaging(0.931) TCGA-BC-A10Z-01 11 48346884 48346884 T G OR4C3 Missense_Mutation p.F131C 0.17 deleterious(0) probably_damaging(0.946) TCGA-BC-A10Z-01 11 51412172 51412172 A G OR4A5 Missense_Mutation p.I75T 0.44 tolerated_low_confidence(0.09) benign(0.049) TCGA-BC-A10Z-01 11 5221902 5221902 G A OR51V1 Missense_Mutation p.S10L 0.44 tolerated(0.2) benign(0.307) TCGA-BC-A10Z-01 11 58125852 58125852 C G OR5B17 Missense_Mutation p.G231R 0.45 deleterious_low_confidence(0.02) probably_damaging(0.938) TCGA-BC-A10Z-01 11 62063822 62063822 G A SCGB1D4 3'UTR 0.52 TCGA-BC-A10Z-01 11 6477958 6477958 C A TRIM3 Missense_Mutation p.R333L 0.45 deleterious(0.01) probably_damaging(0.913) TCGA-BC-A10Z-01 11 88911272 88911272 G A TYR Missense_Mutation p.G51S 0.33 deleterious(0.02) benign(0.259) TCGA-BC-A10Z-01 12 101491695 101491695 T A ANO4 Missense_Mutation p.W625R 0.48 deleterious(0) probably_damaging(1) TCGA-BC-A10Z-01 12 109637346 109637346 G C ACACB Missense_Mutation p.A923P 0.85 deleterious(0) probably_damaging(1) TCGA-BC-A10Z-01 12 109637347 109637347 C T ACACB Missense_Mutation p.A923V 0.85 deleterious(0) probably_damaging(0.945) TCGA-BC-A10Z-01 12 112499100 112499100 A T NAA25 Missense_Mutation p.H414Q 0.47 deleterious(0) probably_damaging(0.997) TCGA-BC-A10Z-01 12 113835135 113835135 A G SDS Missense_Mutation p.I163T 0.48 deleterious(0) probably_damaging(0.994) TCGA-BC-A10Z-01 12 123474487 123474487 C A PITPNM2 Missense_Mutation p.D860Y 0.50 deleterious(0.04) benign(0.005) TCGA-BC-A10Z-01 12 123497236 123497236 G A PITPNM2 Silent p.T113T 0.43 TCGA-BC-A10Z-01 12 130184497 130184497 G T TMEM132D Missense_Mutation p.H276N 0.47 tolerated(0.16) benign(0.039) TCGA-BC-A10Z-01 12 51237659 51237659 A G TMPRSS12 Silent p.Q74Q 0.45 TCGA-BC-A10Z-01 12 52822123 52822123 C A KRT75 Missense_Mutation p.E433D 0.47 tolerated(0.24) possibly_damaging(0.539) TCGA-BC-A10Z-01 12 52841356 52841356 G A KRT6B Silent p.L476L 0.44 TCGA-BC-A10Z-01 12 53823987 53823987 C A AMHR2 Missense_Mutation p.T449N 0.50 deleterious(0.01) benign(0) TCGA-BC-A10Z-01 12 54382961 54382961 A G HOXC10 Missense_Mutation p.K254E 0.47 deleterious(0) benign(0.032) TCGA-BC-A10Z-01 12 78513202 78513202 T G NAV3 Missense_Mutation p.S1076A 0.42 tolerated(0.48) benign(0.012) TCGA-BC-A10Z-01 12 82752141 82752141 C A CCDC59 Missense_Mutation p.R5S 0.49 tolerated(0.09) benign(0.036) TCGA-BC-A10Z-01 12 85546125 85546125 C A LRRIQ1 Nonsense_Mutation p.S1466* 0.47 TCGA-BC-A10Z-01 12 89744457 89744457 T C DUSP6 Missense_Mutation p.N249S 0.45 tolerated(0.4) benign(0.006) TCGA-BC-A10Z-01 13 24797411 24797411 A T SPATA13 Missense_Mutation p.K115M 0.48 deleterious_low_confidence(0) probably_damaging(1) TCGA-BC-A10Z-01 13 33017687 33017687 T C N4BP2L2 Silent p.K329K 0.52 TCGA-BC-A10Z-01 13 38164531 38164531 T A POSTN Missense_Mutation p.E140V 0.41 deleterious(0) probably_damaging(0.912) TCGA-BC-A10Z-01 13 42293771 42293771 C A VWA8 Silent p.G1024G 0.39 TCGA-BC-A10Z-01 14 102478246 102478246 A T DYNC1H1 Missense_Mutation p.H2218L 0.50 probably_damaging(0.994) TCGA-BC-A10Z-01 14 24040535 24040535 G A JPH4 Nonsense_Mutation p.Q469* 0.40 TCGA-BC-A10Z-01 14 36240179 36240179 T C RALGAPA1 Silent p.R98R 0.51 TCGA-BC-A10Z-01 14 38724364 38724364 G A CLEC14A Silent p.T288T 0.30 TCGA-BC-A10Z-01 14 38724365 38724365 G T CLEC14A Missense_Mutation p.T288N 0.30 deleterious(0.02) possibly_damaging(0.518) TCGA-BC-A10Z-01 14 68274384 68274384 C T ZFYVE26 Missense_Mutation p.G206D 0.69 tolerated(0.54) benign(0.009) TCGA-BC-A10Z-01 14 69350972 69350972 C A ACTN1 Missense_Mutation p.K516N 0.91 deleterious(0) probably_damaging(0.986) TCGA-BC-A10Z-01 14 69350974 69350974 T C ACTN1 Missense_Mutation p.K516E 0.90 deleterious(0) probably_damaging(0.942) TCGA-BC-A10Z-01 14 70712622 70712622 T G ADAM21P1 RNA 0.72 TCGA-BC-A10Z-01 14 74036182 74036182 C A ACOT2 Missense_Mutation p.P80T 0.97 deleterious(0) probably_damaging(0.942) TCGA-BC-A10Z-01 14 99640713 99640713 G C BCL11B Silent p.G820G 0.46 TCGA-BC-A10Z-01 15 101718497 101718497 C A CHSY1 Missense_Mutation p.G502V 0.45 tolerated(0.29) possibly_damaging(0.735) TCGA-BC-A10Z-01 15 23812504 23812504 T C MKRN3 3'UTR 0.45 TCGA-BC-A10Z-01 15 32716897 32716897 G T U8 3'Flank 0.17 TCGA-BC-A10Z-01 15 42734378 42734378 G A ZNF106 Missense_Mutation p.S1196L 0.48 deleterious(0.03) probably_damaging(0.996) TCGA-BC-A10Z-01 15 45713263 45713263 A G SPATA5L1 Missense_Mutation p.E706G 0.47 deleterious(0.01) benign(0.099) TCGA-BC-A10Z-01 15 48796007 48796007 T G FBN1 Missense_Mutation p.Q697P 0.43 probably_damaging(0.998) TCGA-BC-A10Z-01 15 60758888 60758888 C A NARG2 Nonsense_Mutation p.E145* 0.38 TCGA-BC-A10Z-01 15 76632729 76632729 C G ISL2 Silent p.T208T 0.23 TCGA-BC-A10Z-01 15 80465405 80465405 G A FAH Silent p.G252G 0.48 TCGA-BC-A10Z-01 15 83687553 83687553 C T BTBD1 Missense_Mutation p.S399N 0.50 tolerated(0.32) benign(0.003) TCGA-BC-A10Z-01 16 29873915 29873915 A G CDIPT Missense_Mutation p.L57P 0.45 deleterious(0) probably_damaging(0.967) TCGA-BC-A10Z-01 16 3165349 3165349 T A ZNF205 Intron 0.32 TCGA-BC-A10Z-01 16 32893126 32893126 G T RP11-989E6.3 5'Flank 0.58 TCGA-BC-A10Z-01 16 50744820 50744820 G C NOD2 Missense_Mutation p.C333S 0.48 deleterious(0) probably_damaging(1) TCGA-BC-A10Z-01 16 53352156 53352157 - AAAAAGAC CHD9 Frame_Shift_Ins p.R2525Kfs*13 0.16 TCGA-BC-A10Z-01 16 55736246 55736246 G T SLC6A2 Intron 0.95 TCGA-BC-A10Z-01 16 57549306 57549306 C A CCDC102A Missense_Mutation p.E490D 0.94 deleterious(0) probably_damaging(0.998) TCGA-BC-A10Z-01 16 89661808 89661808 G T CPNE7 Missense_Mutation p.V521L 0.55 deleterious(0.01) possibly_damaging(0.685) TCGA-BC-A10Z-01 17 15973499 15973501 ATG TT NCOR1 Frame_Shift_Del p.M1498Rfs*2 0.48 TCGA-BC-A10Z-01 17 28295950 28295950 A G EFCAB5 Missense_Mutation p.E111G 0.54 deleterious(0) possibly_damaging(0.888) TCGA-BC-A10Z-01 17 32959819 32959819 C T TMEM132E Missense_Mutation p.P437S 0.28 deleterious(0.04) probably_damaging(0.92) TCGA-BC-A10Z-01 17 34261843 34261843 C A LYZL6 Missense_Mutation p.G135V 0.56 deleterious(0) probably_damaging(0.98) TCGA-BC-A10Z-01 17 35880688 35880688 C G SYNRG Missense_Mutation p.E1244Q 0.35 tolerated(0.14) probably_damaging(0.997) TCGA-BC-A10Z-01 17 37093476 37093476 G T FBXO47 Missense_Mutation p.F437L 0.60 deleterious(0) possibly_damaging(0.772) TCGA-BC-A10Z-01 17 37814042 37814042 C T STARD3 Silent p.F104F 0.60 TCGA-BC-A10Z-01 17 39534380 39534380 G T KRT34 Nonsense_Mutation p.C414* 0.35 TCGA-BC-A10Z-01 17 42335438 42335438 C A SLC4A1 Missense_Mutation p.A400S 0.34 deleterious(0.02) probably_damaging(0.996) TCGA-BC-A10Z-01 17 66303755 66303755 A G ARSG Missense_Mutation p.I41V 0.32 tolerated(0.09) benign(0.068) TCGA-BC-A10Z-01 17 72345442 72345442 C - KIF19 Frame_Shift_Del p.Q390Rfs*285 0.55 TCGA-BC-A10Z-01 17 72949120 72949120 C T HID1 Nonsense_Mutation p.W678* 0.31 TCGA-BC-A10Z-01 17 75212309 75212309 C A SEC14L1 Intron 0.29 TCGA-BC-A10Z-01 17 80320463 80320463 C G TEX19 Missense_Mutation p.P146R 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-BC-A10Z-01 18 12453128 12453128 A - SPIRE1 Frame_Shift_Del p.C596Vfs*58 0.10 TCGA-BC-A10Z-01 18 57364549 57364549 C A CCBE1 Missense_Mutation p.G9V 0.49 tolerated_low_confidence(0.15) benign(0.186) TCGA-BC-A10Z-01 19 10426560 10426560 G A FDX1L Missense_Mutation p.A38V 0.43 tolerated(0.31) benign(0.006) TCGA-BC-A10Z-01 19 13054680 13054680 G T CALR Nonsense_Mutation p.E403* 0.51 TCGA-BC-A10Z-01 19 20308237 20308237 T C ZNF486 Missense_Mutation p.C240R 0.55 deleterious(0.01) probably_damaging(0.98) TCGA-BC-A10Z-01 19 21367335 21367335 G T ZNF431 3'UTR 0.27 TCGA-BC-A10Z-01 19 21720692 21720692 A T ZNF429 Nonsense_Mutation p.K613* 0.43 TCGA-BC-A10Z-01 19 2217053 2217053 G A DOT1L Silent p.G836G 0.47 TCGA-BC-A10Z-01 19 2226716 2226716 C G DOT1L Missense_Mutation p.P1399R 0.44 deleterious_low_confidence(0) possibly_damaging(0.55) TCGA-BC-A10Z-01 19 2989558 2989558 G A TLE6 Missense_Mutation p.C340Y 0.31 deleterious(0) possibly_damaging(0.827) TCGA-BC-A10Z-01 19 35979362 35979362 T C KRTDAP Missense_Mutation p.N65S 0.09 deleterious(0.01) probably_damaging(0.987) TCGA-BC-A10Z-01 19 38056942 38056942 G A ZNF571 Missense_Mutation p.R130W 0.46 deleterious(0.01) benign(0.116) TCGA-BC-A10Z-01 19 40929016 40929016 C A SERTAD1 Silent p.G146G 0.53 TCGA-BC-A10Z-01 19 42636560 42636560 C A POU2F2 Missense_Mutation p.V2F 0.48 tolerated_low_confidence(0.06) probably_damaging(0.979) TCGA-BC-A10Z-01 19 44890851 44890851 T G ZNF285 Missense_Mutation p.K519T 0.49 deleterious(0) probably_damaging(0.996) TCGA-BC-A10Z-01 19 46971527 46971527 A C PNMAL1 3'UTR 0.33 TCGA-BC-A10Z-01 19 49248991 49248991 A G IZUMO1 Silent p.P42P 0.45 TCGA-BC-A10Z-01 19 50393089 50393089 C T IL4I1 Silent p.T536T 0.05 TCGA-BC-A10Z-01 19 51465087 51465087 A T KLK6 Silent p.R165R 0.42 TCGA-BC-A10Z-01 19 51503358 51503358 C T KLK8 Silent p.Q174Q 0.53 TCGA-BC-A10Z-01 19 51830117 51830117 C T IGLON5 Missense_Mutation p.A204V 0.46 tolerated(0.3) benign(0.09) TCGA-BC-A10Z-01 19 51961640 51961640 A T SIGLEC8 Translation_Start_Site p.M1? 0.48 unknown(0) TCGA-BC-A10Z-01 19 56166410 56166410 G T U2AF2 5'Flank 0.47 TCGA-BC-A10Z-01 19 57176266 57176266 C - ZNF835 Frame_Shift_Del p.E101Rfs*53 0.50 TCGA-BC-A10Z-01 19 7996055 7996055 G C TIMM44 Missense_Mutation p.L336V 0.34 deleterious(0) benign(0.275) TCGA-BC-A10Z-01 19 8028565 8028565 C A ELAVL1 Missense_Mutation p.W261C 0.57 deleterious(0) probably_damaging(1) TCGA-BC-A10Z-01 19 9045850 9045853 AGTT - MUC16 Frame_Shift_Del p.T11927Qfs*16 0.41 TCGA-BC-A10Z-01 1 109148855 109148855 G C FAM102B Missense_Mutation p.G90A 0.42 deleterious(0) probably_damaging(0.999) TCGA-BC-A10Z-01 1 1289296 1289296 T A MXRA8 Missense_Mutation p.N412I 0.52 deleterious(0) probably_damaging(0.994) TCGA-BC-A10Z-01 1 152976049 152976049 C A SPRR3 3'UTR 0.62 TCGA-BC-A10Z-01 1 172277988 172277988 G T DNM3 Intron 0.62 TCGA-BC-A10Z-01 1 17991069 17991069 A C ARHGEF10L Missense_Mutation p.E996D 0.45 tolerated(1) benign(0) TCGA-BC-A10Z-01 1 182525282 182525282 G T RGSL1 3'UTR 0.69 TCGA-BC-A10Z-01 1 201046155 201046155 C T CACNA1S Missense_Mutation p.A574T 0.63 deleterious(0) possibly_damaging(0.907) TCGA-BC-A10Z-01 1 207760833 207760833 C T CR1 Missense_Mutation p.P1878L 0.46 deleterious(0) possibly_damaging(0.805) TCGA-BC-A10Z-01 1 231042601 231042601 T A TTC13 3'UTR 0.39 TCGA-BC-A10Z-01 1 232945598 232945598 A T MAP10 3'UTR 0.42 TCGA-BC-A10Z-01 1 236881238 236881238 C A ACTN2 Silent p.G69G 0.45 TCGA-BC-A10Z-01 1 238090313 238090313 G C RP11-193H5.1 RNA 0.58 TCGA-BC-A10Z-01 1 46500283 46500283 A G MAST2 Silent p.T1314T 0.06 TCGA-BC-A10Z-01 1 51761791 51761791 C A TTC39A Missense_Mutation p.D373Y 0.36 deleterious(0) probably_damaging(0.945) TCGA-BC-A10Z-01 1 6158762 6158762 A G KCNAB2 3'UTR 0.50 TCGA-BC-A10Z-01 1 6694587 6694587 C A DNAJC11 3'UTR 0.54 TCGA-BC-A10Z-01 1 79412048 79412048 T C ELTD1 Missense_Mutation p.E79G 0.49 tolerated_low_confidence(0.13) benign(0.219) TCGA-BC-A10Z-01 1 90486427 90486427 A G ZNF326 Silent p.L417L 0.44 TCGA-BC-A10Z-01 20 50701265 50701265 A C ZFP64 Missense_Mutation p.V590G 0.55 tolerated(0.36) possibly_damaging(0.824) TCGA-BC-A10Z-01 20 56227370 56227370 C T PMEPA1 Silent p.R201R 0.65 TCGA-BC-A10Z-01 20 62839764 62839764 G T MYT1 Missense_Mutation p.Q405H 0.41 benign(0.006) TCGA-BC-A10Z-01 21 35260748 35260748 C G ITSN1 3'UTR 0.50 TCGA-BC-A10Z-01 21 41505791 41505791 G T DSCAM Silent p.T1184T 0.40 TCGA-BC-A10Z-01 22 24472172 24472172 A T CABIN1 Missense_Mutation p.H896L 0.51 deleterious(0) probably_damaging(0.993) TCGA-BC-A10Z-01 22 26423432 26423432 C T MYO18B Missense_Mutation p.P2498S 0.47 tolerated(1) benign(0.015) TCGA-BC-A10Z-01 22 31487025 31487025 C G SMTN Missense_Mutation p.S339C 0.43 deleterious(0) possibly_damaging(0.75) TCGA-BC-A10Z-01 22 32211485 32211485 C T DEPDC5 Intron 0.14 TCGA-BC-A10Z-01 2 108487515 108487515 G - RGPD4 Frame_Shift_Del p.G1019Vfs*23 0.27 TCGA-BC-A10Z-01 2 113959028 113959028 C A PSD4 3'UTR 0.44 TCGA-BC-A10Z-01 2 142567848 142567848 A T LRP1B Missense_Mutation p.C69S 0.46 benign(0.415) TCGA-BC-A10Z-01 2 149519486 149519486 G T EPC2 Missense_Mutation p.V268F 0.41 deleterious(0) possibly_damaging(0.887) TCGA-BC-A10Z-01 2 179463285 179463285 A T TTN Missense_Mutation p.V19020E 0.41 TCGA-BC-A10Z-01 2 179470150 179470150 C T TTN Missense_Mutation p.D17958N 0.49 TCGA-BC-A10Z-01 2 210559239 210559239 C A MAP2 Missense_Mutation p.A782E 0.51 tolerated(0.05) possibly_damaging(0.678) TCGA-BC-A10Z-01 2 21228142 21228157 GGAGGGAATCTCAATG - APOB Frame_Shift_Del p.I3862Lfs*17 0.27 TCGA-BC-A10Z-01 2 222347238 222347238 G T EPHA4 Silent p.V384V 0.45 TCGA-BC-A10Z-01 2 231079722 231079722 G C SP110 Missense_Mutation p.Q87E 0.43 deleterious(0.01) benign(0.092) TCGA-BC-A10Z-01 2 233759548 233759548 C T NGEF Missense_Mutation p.E303K 0.47 tolerated(0.3) possibly_damaging(0.805) TCGA-BC-A10Z-01 2 234112784 234112784 G A INPP5D Silent p.L984L 0.36 TCGA-BC-A10Z-01 2 277266 277266 G A ACP1 Missense_Mutation p.V147I 0.09 tolerated(0.08) benign(0.005) TCGA-BC-A10Z-01 2 29443612 29443612 C - ALK Frame_Shift_Del p.G1202Efs*56 0.39 TCGA-BC-A10Z-01 2 43813540 43813540 C A THADA Missense_Mutation p.R178I 0.54 deleterious(0) benign(0.316) TCGA-BC-A10Z-01 2 5839757 5839757 C T SOX11 3'UTR 0.49 TCGA-BC-A10Z-01 2 63092103 63092103 A T EHBP1 Missense_Mutation p.D367V 0.42 deleterious(0) probably_damaging(0.999) TCGA-BC-A10Z-01 2 72371121 72371121 G A CYP26B1 Silent p.R142R 0.41 TCGA-BC-A10Z-01 3 121251856 121251856 T C POLQ Missense_Mutation p.E314G 0.45 deleterious(0.01) benign(0.063) TCGA-BC-A10Z-01 3 148744852 148744852 T - GYG1 3'UTR 0.12 TCGA-BC-A10Z-01 3 156009561 156009561 T G KCNAB1 Intron 0.53 TCGA-BC-A10Z-01 3 173993239 173993240 GG T NLGN1 Frame_Shift_Del p.G261Lfs*10 0.22 TCGA-BC-A10Z-01 3 30827849 30827849 C A GADL1 Nonsense_Mutation p.E434* 0.43 TCGA-BC-A10Z-01 3 33099714 33099714 C T GLB1 Silent p.L200L 0.43 TCGA-BC-A10Z-01 3 36526541 36526541 A T STAC Missense_Mutation p.M188L 0.44 tolerated(1) probably_damaging(0.972) TCGA-BC-A10Z-01 3 430967 430967 C G CHL1 Silent p.G760G 0.44 TCGA-BC-A10Z-01 3 46449560 46449560 G A CCRL2 Missense_Mutation p.G9D 0.43 deleterious(0) benign(0.024) TCGA-BC-A10Z-01 3 47307360 47307360 C T KIF9 Missense_Mutation p.G259D 0.45 deleterious(0) probably_damaging(0.996) TCGA-BC-A10Z-01 3 71008253 71008253 T C FOXP1 3'Flank 0.38 TCGA-BC-A10Z-01 3 96706423 96706423 T G EPHA6 Missense_Mutation p.F234V 0.53 tolerated(0.4) probably_damaging(0.998) TCGA-BC-A10Z-01 4 104079539 104079539 T A CENPE Missense_Mutation p.K984I 0.87 possibly_damaging(0.885) TCGA-BC-A10Z-01 4 159894436 159894436 G T C4orf45 Missense_Mutation p.P31H 0.43 deleterious(0) probably_damaging(0.983) TCGA-BC-A10Z-01 4 159894437 159894437 G T C4orf45 Missense_Mutation p.P31T 0.43 tolerated(0.38) possibly_damaging(0.548) TCGA-BC-A10Z-01 4 188924570 188924570 T A ZFP42 Silent p.A203A 0.41 TCGA-BC-A10Z-01 4 2814128 2814128 G A SH3BP2 Missense_Mutation p.A2T 0.45 deleterious_low_confidence(0.04) benign(0.002) TCGA-BC-A10Z-01 4 39928476 39928476 T C PDS5A Missense_Mutation p.I116M 0.44 deleterious(0) probably_damaging(1) TCGA-BC-A10Z-01 4 46060339 46060339 C A GABRG1 Nonsense_Mutation p.G271* 0.42 TCGA-BC-A10Z-01 4 46060340 46060340 C A GABRG1 Missense_Mutation p.M270I 0.42 tolerated(0.31) probably_damaging(0.968) TCGA-BC-A10Z-01 5 101816070 101816070 C G SLCO6A1 Missense_Mutation p.E143Q 0.45 deleterious(0.04) benign(0.321) TCGA-BC-A10Z-01 5 112177044 112177044 T C APC Missense_Mutation p.I1918T 0.47 benign(0) TCGA-BC-A10Z-01 5 120022379 120022379 G T PRR16 Missense_Mutation p.R274M 0.61 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BC-A10Z-01 5 120022380 120022380 G T PRR16 Missense_Mutation p.R274S 0.61 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BC-A10Z-01 5 139189077 139189077 C T PSD2 Missense_Mutation p.R18C 0.47 deleterious_low_confidence(0.03) benign(0.001) TCGA-BC-A10Z-01 5 140242040 140242040 G T AC005609.1 3'UTR 0.82 TCGA-BC-A10Z-01 5 14716830 14716832 AGG - ANKH In_Frame_Del p.S375del 0.30 TCGA-BC-A10Z-01 5 147503432 147503432 G - SPINK5 Frame_Shift_Del p.G859Efs*83 0.32 TCGA-BC-A10Z-01 5 158603765 158603765 C A RNF145 Nonsense_Mutation p.E196* 0.42 TCGA-BC-A10Z-01 5 158603766 158603766 C A RNF145 Missense_Mutation p.L195F 0.42 tolerated(0.08) possibly_damaging(0.839) TCGA-BC-A10Z-01 5 180666567 180666567 C G GNB2L1 Missense_Mutation p.E149Q 0.44 deleterious(0.01) possibly_damaging(0.685) TCGA-BC-A10Z-01 5 21459680 21459680 T G GUSBP1 RNA 0.07 TCGA-BC-A10Z-01 5 43298941 43298941 C A HMGCS1 Missense_Mutation p.D43Y 0.50 deleterious(0) possibly_damaging(0.531) TCGA-BC-A10Z-01 5 76785371 76785371 T A WDR41 Missense_Mutation p.E26D 0.47 tolerated(0.35) benign(0.165) TCGA-BC-A10Z-01 5 93076516 93076516 C G POU5F2 Missense_Mutation p.D252H 0.46 deleterious(0) possibly_damaging(0.906) TCGA-BC-A10Z-01 5 96332096 96332096 G T LNPEP Missense_Mutation p.W470C 0.53 deleterious(0) probably_damaging(1) TCGA-BC-A10Z-01 6 117198538 117198538 G A RFX6 Missense_Mutation p.G34S 0.43 tolerated_low_confidence(0.22) benign(0.006) TCGA-BC-A10Z-01 6 130166922 130166922 C T TMEM244 Missense_Mutation p.V37M 0.52 tolerated(0.28) benign(0.002) TCGA-BC-A10Z-01 6 150713484 150713493 CAGCCCCGAG - IYD Frame_Shift_Del p.T125Mfs*13 0.39 TCGA-BC-A10Z-01 6 152765606 152765606 A T SYNE1 Silent p.A1259A 0.48 TCGA-BC-A10Z-01 6 152765624 152765624 T G SYNE1 Missense_Mutation p.K1253N 0.46 benign(0.119) TCGA-BC-A10Z-01 6 28228564 28228564 A C NKAPL 3'UTR 0.42 TCGA-BC-A10Z-01 6 31846814 31846814 G T SLC44A4 5'Flank 0.49 TCGA-BC-A10Z-01 6 43517661 43517661 G A XPO5 Missense_Mutation p.S580F 0.61 deleterious(0.03) benign(0.004) TCGA-BC-A10Z-01 6 50681590 50681590 A T TFAP2D 5'UTR 0.29 TCGA-BC-A10Z-01 6 52869894 52869894 A C ICK 3'UTR 0.50 TCGA-BC-A10Z-01 6 52869907 52869907 T G ICK 3'UTR 0.48 TCGA-BC-A10Z-01 7 107216972 107216972 T C DUS4L Missense_Mutation p.I214T 0.45 deleterious(0) benign(0.426) TCGA-BC-A10Z-01 7 127983927 127983927 G C RBM28 5'UTR 0.38 TCGA-BC-A10Z-01 7 131825502 131825502 C T PLXNA4 Missense_Mutation p.S1765N 0.49 tolerated(0.42) probably_damaging(0.998) TCGA-BC-A10Z-01 7 136699983 136699983 G T CHRM2 Missense_Mutation p.C124F 0.51 deleterious(0.02) probably_damaging(1) TCGA-BC-A10Z-01 7 141731507 141731507 G T MGAM Missense_Mutation p.D500Y 0.44 deleterious(0) probably_damaging(1) TCGA-BC-A10Z-01 7 150713833 150713833 G - ATG9B Frame_Shift_Del p.P788Qfs*43 0.39 TCGA-BC-A10Z-01 7 2979547 2979547 G A CARD11 Missense_Mutation p.H234Y 0.49 tolerated(0.2) possibly_damaging(0.904) TCGA-BC-A10Z-01 7 29923639 29923639 C G WIPF3 Missense_Mutation p.P177A 0.42 tolerated_low_confidence(0.1) possibly_damaging(0.811) TCGA-BC-A10Z-01 7 31683115 31683115 C A CCDC129 Missense_Mutation p.Q737K 0.52 deleterious(0.04) probably_damaging(0.999) TCGA-BC-A10Z-01 7 37780403 37780403 T C GPR141 Silent p.S136S 0.41 TCGA-BC-A10Z-01 7 44579861 44579861 C T NPC1L1 Silent p.L45L 0.42 TCGA-BC-A10Z-01 7 71130478 71130478 G T WBSCR17 Missense_Mutation p.S388I 0.50 tolerated(0.17) benign(0.043) TCGA-BC-A10Z-01 7 99621227 99621227 A T ZKSCAN1 Missense_Mutation p.E33V 0.39 tolerated(0.21) probably_damaging(0.991) TCGA-BC-A10Z-01 8 101540171 101540171 G A ANKRD46 Silent p.V124V 0.40 TCGA-BC-A10Z-01 8 113237152 113237152 G A CSMD3 Missense_Mutation p.P3658S 0.48 deleterious(0) benign(0.297) TCGA-BC-A10Z-01 8 113519006 113519006 G T CSMD3 Missense_Mutation p.N1603K 0.41 deleterious(0) probably_damaging(0.991) TCGA-BC-A10Z-01 8 128751001 128751001 G A MYC Missense_Mutation p.A180T 0.71 tolerated(0.15) benign(0.071) TCGA-BC-A10Z-01 8 144124680 144124680 G A C8orf31 Splice_Site p.X62_splice 0.33 TCGA-BC-A10Z-01 8 144460480 144460480 C T RHPN1 Silent p.Y141Y 0.45 TCGA-BC-A10Z-01 8 144644198 144644198 C G GSDMD Missense_Mutation p.S298C 0.46 deleterious(0.01) benign(0.338) TCGA-BC-A10Z-01 8 17794745 17794745 G A PCM1 Missense_Mutation p.E67K 0.46 deleterious(0) probably_damaging(0.958) TCGA-BC-A10Z-01 8 19250999 19250999 G T SH2D4A Missense_Mutation p.G407C 0.56 deleterious(0) probably_damaging(1) TCGA-BC-A10Z-01 8 22051571 22051571 G T BMP1 Missense_Mutation p.G394V 0.42 deleterious(0) possibly_damaging(0.841) TCGA-BC-A10Z-01 8 25715971 25715971 G A EBF2 Silent p.S464S 0.48 TCGA-BC-A10Z-01 8 28360311 28360311 A G FZD3 5'UTR 0.47 TCGA-BC-A10Z-01 8 36691164 36691173 TGAGGCGAGT - KCNU1 Frame_Shift_Del p.R402Wfs*8 0.34 TCGA-BC-A10Z-01 8 38067967 38067967 A C BAG4 Missense_Mutation p.K444Q 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-BC-A10Z-01 8 42022613 42022614 - G AP3M2 Frame_Shift_Ins p.V205Gfs*3 0.32 TCGA-BC-A10Z-01 8 6793612 6793612 G C DEFA4 Missense_Mutation p.T75R 0.45 tolerated(0.58) possibly_damaging(0.796) TCGA-BC-A10Z-01 8 68105731 68105731 T G CSPP1 Silent p.G1116G 0.46 TCGA-BC-A10Z-01 8 8185737 8185737 G T SGK223 Missense_Mutation p.T852N 0.47 benign(0.276) TCGA-BC-A10Z-01 8 91946573 91946573 G C NECAB1 Silent p.G245G 0.37 TCGA-BC-A10Z-01 9 100056292 100056292 C T CCDC180 5'UTR 0.39 TCGA-BC-A10Z-01 9 107584777 107584777 A G ABCA1 Missense_Mutation p.M943T 0.54 deleterious(0) probably_damaging(0.988) TCGA-BC-A10Z-01 9 112185130 112185130 G A PTPN3 Missense_Mutation p.S335L 0.32 tolerated(0.07) benign(0.002) TCGA-BC-A10Z-01 9 125329852 125329852 C A OR1L8 Missense_Mutation p.R302M 0.46 deleterious(0.03) benign(0.01) TCGA-BC-A10Z-01 9 139904510 139904510 G A ABCA2 Silent p.F2140F 0.50 TCGA-BC-A10Z-01 9 14816837 14816837 T C FREM1 Missense_Mutation p.D860G 0.30 deleterious(0) probably_damaging(1) TCGA-BC-A10Z-01 9 35697837 35697837 C T TLN1 Missense_Mutation p.R2526Q 0.34 deleterious(0.03) probably_damaging(0.979) TCGA-BC-A10Z-01 9 35841793 35841793 T A TMEM8B Splice_Site 0.41 TCGA-BC-A10Z-01 9 99522164 99522164 T C ZNF510 Silent p.K316K 0.51 TCGA-BC-A10Z-01 X 12905757 12905757 A G TLR7 Silent p.Q710Q 0.52 TCGA-BC-A10Z-01 X 17710579 17710579 C - NHS Frame_Shift_Del p.L283* 0.40 TCGA-BC-A10Z-01 X 21627708 21627708 G T CNKSR2 Missense_Mutation p.A889S 0.74 tolerated(0.76) benign(0.003) TCGA-BC-A10Z-01 X 66766453 66766453 G A AR Missense_Mutation p.G489R 0.49 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-BC-A10Z-01 X 69669639 69669639 A G DLG3 Silent p.R211R 0.49 TCGA-BC-A10Z-01 X 70712062 70712062 C A Y_RNA 5'Flank 0.36 TCGA-BC-A10Z-01 X 70712063 70712063 C A Y_RNA 5'Flank 0.36 TCGA-BC-A10Z-01 X 75005070 75005070 T C MAGEE2 5'UTR 0.50 TCGA-BC-A216-01 10 127426555 127426555 A G EDRF1 Silent p.L609L 0.35 TCGA-BC-A216-01 10 27826828 27826828 G A RAB18 Missense_Mutation p.G157S 0.38 deleterious(0) probably_damaging(1) TCGA-BC-A216-01 10 46968625 46968625 C A SYT15 Missense_Mutation p.C104F 0.19 tolerated(0.51) benign(0.002) TCGA-BC-A216-01 10 5144299 5144299 T C AKR1C3 Missense_Mutation p.C193R 0.39 deleterious(0) probably_damaging(0.995) TCGA-BC-A216-01 11 134113163 134113163 G A VPS26B Silent p.E232E 0.38 TCGA-BC-A216-01 11 19251120 19251120 T A E2F8 Nonsense_Mutation p.K592* 0.40 TCGA-BC-A216-01 11 62414385 62414385 C T INTS5 3'UTR 0.36 TCGA-BC-A216-01 12 104396997 104396997 G A GLT8D2 Missense_Mutation p.A67V 0.41 deleterious(0.01) possibly_damaging(0.744) TCGA-BC-A216-01 12 113758428 113758428 A G SLC8B1 Missense_Mutation p.S162P 0.09 deleterious(0) probably_damaging(0.998) TCGA-BC-A216-01 12 130834407 130834407 C T PIWIL1 Silent p.N313N 0.51 TCGA-BC-A216-01 12 13716219 13716219 G C GRIN2B Missense_Mutation p.A1318G 0.47 tolerated(0.12) benign(0.315) TCGA-BC-A216-01 12 41410483 41410483 G A CNTN1 Splice_Site p.X729_splice 0.44 TCGA-BC-A216-01 12 56975266 56975266 C T RBMS2 Missense_Mutation p.R236W 0.49 deleterious(0) possibly_damaging(0.777) TCGA-BC-A216-01 12 62775287 62775287 C T USP15 Missense_Mutation p.P311L 0.44 deleterious(0) possibly_damaging(0.747) TCGA-BC-A216-01 13 27332981 27332981 C T GPR12 Silent p.A328A 0.39 TCGA-BC-A216-01 14 100576054 100576054 T G EVL Intron 0.37 TCGA-BC-A216-01 14 31597908 31597908 G A HECTD1 Missense_Mutation p.R1557W 0.41 deleterious(0) probably_damaging(0.973) TCGA-BC-A216-01 14 57083918 57083918 C T TMEM260 Missense_Mutation p.S320L 0.31 tolerated(0.14) benign(0.034) TCGA-BC-A216-01 14 60194386 60194386 T C RTN1 Missense_Mutation p.E339G 0.09 deleterious(0.01) benign(0.025) TCGA-BC-A216-01 14 70633754 70633754 C T SLC8A3 Silent p.K462K 0.42 TCGA-BC-A216-01 15 59450529 59450529 A C MYO1E Silent p.T945T 0.48 TCGA-BC-A216-01 15 99512659 99512659 T C PGPEP1L Silent p.A122A 0.18 TCGA-BC-A216-01 17 10404040 10404040 T C MYH1 Silent p.L1256L 0.23 TCGA-BC-A216-01 17 39389083 39389083 T A KRTAP9-3 Missense_Mutation p.S110R 0.37 deleterious(0.01) possibly_damaging(0.744) TCGA-BC-A216-01 17 43530970 43530970 T C PLEKHM1 Missense_Mutation p.T750A 0.32 deleterious(0) probably_damaging(0.997) TCGA-BC-A216-01 17 44051811 44051811 A G MAPT Missense_Mutation p.H94R 0.47 deleterious(0.04) benign(0.006) TCGA-BC-A216-01 17 47117454 47117454 G A IGF2BP1 Splice_Site p.X273_splice 0.37 TCGA-BC-A216-01 17 48351885 48351885 G A TMEM92 Missense_Mutation p.G8D 0.28 tolerated(0.07) possibly_damaging(0.866) TCGA-BC-A216-01 17 48545622 48545622 A G CHAD Missense_Mutation p.S185P 0.08 tolerated(0.24) benign(0.305) TCGA-BC-A216-01 17 73257679 73257679 C T GGA3 5'UTR 0.38 TCGA-BC-A216-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.67 deleterious(0) probably_damaging(1) TCGA-BC-A216-01 19 12491171 12491171 C A CTD-3105H18.14 3'UTR 0.33 TCGA-BC-A216-01 19 12721447 12721447 C T ZNF490 Silent p.E16E 0.23 TCGA-BC-A216-01 19 18252722 18252722 C T MAST3 Nonsense_Mutation p.Q717* 0.10 TCGA-BC-A216-01 19 20188854 20188854 G T ZNF90 5'UTR 0.33 TCGA-BC-A216-01 19 22364341 22364341 C G ZNF676 Missense_Mutation p.E60Q 0.48 deleterious(0.04) probably_damaging(0.932) TCGA-BC-A216-01 19 36228046 36228046 C A KMT2B Missense_Mutation p.Q2478K 0.33 possibly_damaging(0.855) TCGA-BC-A216-01 19 40360958 40360958 G T FCGBP Silent p.R5150R 0.40 TCGA-BC-A216-01 19 40360959 40360959 C T FCGBP Missense_Mutation p.R5150H 0.37 benign(0.108) TCGA-BC-A216-01 19 51535232 51535232 G A KLK12 Silent p.R119R 0.48 TCGA-BC-A216-01 1 104160105 104160105 G A AMY2A Missense_Mutation p.A15T 0.27 deleterious(0.05) benign(0.191) TCGA-BC-A216-01 1 1169395 1169395 G A B3GALT6 3'UTR 0.16 TCGA-BC-A216-01 1 11710623 11710623 C T FBXO2 Silent p.L97L 0.18 TCGA-BC-A216-01 1 145532146 145532146 C T ITGA10 Nonsense_Mutation p.R264* 0.24 TCGA-BC-A216-01 1 182551358 182551360 CTT - RNASEL In_Frame_Del p.K534del 0.10 TCGA-BC-A216-01 1 196716375 196716375 C T CFH Missense_Mutation p.R1210C 0.04 tolerated(0.05) benign(0.273) TCGA-BC-A216-01 1 21808194 21808194 G C NBPF3 Missense_Mutation p.C513S 0.19 tolerated(0.36) benign(0.227) TCGA-BC-A216-01 1 224002032 224002032 G A TP53BP2 Nonsense_Mutation p.R67* 0.12 TCGA-BC-A216-01 1 248616651 248616651 G A OR2T2 Missense_Mutation p.V185M 0.32 tolerated(0.16) probably_damaging(0.999) TCGA-BC-A216-01 1 31907019 31907019 C A SERINC2 Silent p.L456L 0.89 TCGA-BC-A216-01 1 79403615 79403615 A T ELTD1 Missense_Mutation p.L213I 0.30 tolerated(0.16) benign(0.173) TCGA-BC-A216-01 20 16729006 16729006 C T OTOR 5'UTR 0.40 TCGA-BC-A216-01 20 31023622 31023622 A G ASXL1 Missense_Mutation p.N1036S 0.45 tolerated_low_confidence(0.36) benign(0) TCGA-BC-A216-01 20 61528282 61528282 G A DIDO1 Missense_Mutation p.P552L 0.38 benign(0.012) TCGA-BC-A216-01 21 22804446 22804446 A C NCAM2 Missense_Mutation p.Y500S 0.33 tolerated(0.32) benign(0.025) TCGA-BC-A216-01 22 26294307 26294307 A G MYO18B Missense_Mutation p.K1568E 0.47 deleterious(0) possibly_damaging(0.492) TCGA-BC-A216-01 2 131521437 131521437 G A AMER3 Missense_Mutation p.D598N 0.50 tolerated(0.1) benign(0.048) TCGA-BC-A216-01 2 174224139 174224139 G A CDCA7 Missense_Mutation p.E102K 0.30 tolerated(0.11) benign(0.023) TCGA-BC-A216-01 2 239056628 239056628 A G KLHL30 Missense_Mutation p.N435S 0.17 tolerated(0.06) benign(0.057) TCGA-BC-A216-01 2 25611083 25611083 C T DTNB Missense_Mutation p.A575T 0.47 deleterious(0) probably_damaging(0.928) TCGA-BC-A216-01 2 85536399 85536400 - GCA TCF7L1 In_Frame_Ins p.A529dup 0.48 TCGA-BC-A216-01 2 85552051 85552051 C T TGOLN2 Missense_Mutation p.R432H 0.31 deleterious(0.01) benign(0.068) TCGA-BC-A216-01 2 8871250 8871250 A G KIDINS220 Missense_Mutation p.I1639T 0.48 tolerated_low_confidence(0.72) benign(0.001) TCGA-BC-A216-01 3 121158902 121158903 GG - POLQ Frame_Shift_Del p.T2442Nfs*6 0.34 TCGA-BC-A216-01 3 122662337 122662337 T A SEMA5B Missense_Mutation p.D179V 0.50 deleterious(0.01) probably_damaging(0.997) TCGA-BC-A216-01 3 132349391 132349391 T A ACAD11 Missense_Mutation p.M285L 0.18 tolerated(0.69) benign(0.001) TCGA-BC-A216-01 3 133339026 133339026 C A TOPBP1 Missense_Mutation p.G1115V 0.38 deleterious(0.01) probably_damaging(0.938) TCGA-BC-A216-01 3 179103488 179103488 C T MFN1 Silent p.G598G 0.37 TCGA-BC-A216-01 3 184911175 184911175 G T EHHADH Missense_Mutation p.N337K 0.30 tolerated(1) benign(0.002) TCGA-BC-A216-01 3 186917604 186917604 C T RTP1 Missense_Mutation p.R180C 0.59 deleterious(0.03) possibly_damaging(0.832) TCGA-BC-A216-01 3 20194018 20194018 T - KAT2B 3'UTR 0.27 TCGA-BC-A216-01 3 28361126 28361126 T C CMC1 3'UTR 0.35 TCGA-BC-A216-01 3 57154328 57154328 G A IL17RD Missense_Mutation p.A47V 0.31 tolerated_low_confidence(0.66) benign(0.006) TCGA-BC-A216-01 4 187455191 187455191 C T MTNR1A Silent p.R235R 0.25 TCGA-BC-A216-01 4 88732600 88732600 A T IBSP Missense_Mutation p.E164D 0.35 tolerated(0.05) possibly_damaging(0.457) TCGA-BC-A216-01 5 175111106 175111106 G A HRH2 Silent p.A290A 0.26 TCGA-BC-A216-01 6 125584204 125584204 A G TPD52L1 3'UTR 0.27 TCGA-BC-A216-01 6 131946047 131946047 T C MED23 Missense_Mutation p.D81G 0.08 tolerated(0.29) benign(0.122) TCGA-BC-A216-01 6 152651593 152651593 T G SYNE1 Missense_Mutation p.T4743P 0.56 probably_damaging(0.921) TCGA-BC-A216-01 6 27101166 27101166 G T HIST1H2AG Missense_Mutation p.G106C 0.43 deleterious_low_confidence(0) probably_damaging(1) TCGA-BC-A216-01 6 55360266 55360266 C G HMGCLL1 Missense_Mutation p.C279S 0.37 deleterious(0.01) probably_damaging(1) TCGA-BC-A216-01 6 7583427 7583427 A G DSP Missense_Mutation p.M1978V 0.44 benign(0) TCGA-BC-A216-01 7 111846811 111846811 C A ZNF277 Missense_Mutation p.Q14K 0.25 tolerated_low_confidence(0.51) benign(0) TCGA-BC-A216-01 7 19738145 19738145 A G TWISTNB Missense_Mutation p.W271R 0.37 tolerated(0.36) benign(0.001) TCGA-BC-A216-01 7 70252291 70252291 C T AUTS2 Missense_Mutation p.S802L 0.38 deleterious(0) probably_damaging(0.944) TCGA-BC-A216-01 7 83590638 83590638 T C SEMA3A 3'UTR 0.09 TCGA-BC-A216-01 8 113421218 113421218 A T CSMD3 Missense_Mutation p.D1813E 0.48 deleterious(0) probably_damaging(0.999) TCGA-BC-A216-01 8 134472006 134472006 G - ST3GAL1 3'UTR 0.33 TCGA-BC-A216-01 8 48856412 48856412 C A PRKDC Splice_Site p.X270_splice 0.45 TCGA-BC-A216-01 9 123931905 123931905 A G CNTRL Silent p.E2029E 0.09 TCGA-BC-A216-01 9 140062302 140062302 G T GRIN1 3'UTR 0.32 TCGA-BC-A216-01 X 102335094 102335094 C A NXF3 Missense_Mutation p.K326N 0.38 tolerated(0.11) benign(0.214) TCGA-BC-A216-01 X 129159156 129159156 C T BCORL1 Missense_Mutation p.H1294Y 0.32 benign(0.113) TCGA-BC-A216-01 X 129474149 129474149 C T SLC25A14 5'UTR 0.62 TCGA-BC-A216-01 X 25033826 25033826 C G ARX Missense_Mutation p.C10S 0.24 deleterious(0) unknown(0) TCGA-BC-A216-01 X 63413037 63413037 G A AMER1 Missense_Mutation p.P44S 0.45 tolerated(0.28) benign(0.036) TCGA-BC-A217-01 10 23297251 23297251 C A ARMC3 Silent p.R626R 0.15 TCGA-BC-A217-01 10 26462898 26462898 T C MYO3A Silent p.A1235A 0.46 TCGA-BC-A217-01 10 5009199 5009199 T C AKR1C1 Silent p.V111V 0.43 TCGA-BC-A217-01 10 88206050 88206050 C T WAPAL Missense_Mutation p.E1091K 0.58 tolerated(0.24) benign(0.027) TCGA-BC-A217-01 10 94225544 94225544 T C IDE Missense_Mutation p.I793V 0.28 tolerated(0.61) benign(0.004) TCGA-BC-A217-01 11 120317715 120317715 G C ARHGEF12 Missense_Mutation p.E504Q 0.30 deleterious(0.01) probably_damaging(0.988) TCGA-BC-A217-01 11 18267513 18267513 C - SAA2 Frame_Shift_Del p.N59Tfs*17 0.14 TCGA-BC-A217-01 11 18290820 18290820 G - SAA1 Frame_Shift_Del p.N59Tfs*17 0.28 TCGA-BC-A217-01 11 47436693 47436693 G T SLC39A13 Missense_Mutation p.L341F 0.39 deleterious(0) probably_damaging(0.973) TCGA-BC-A217-01 11 47436729 47436729 G A SLC39A13 Intron 0.40 TCGA-BC-A217-01 11 76905526 76905526 C T MYO7A Missense_Mutation p.T1427M 0.11 tolerated(0.06) probably_damaging(0.91) TCGA-BC-A217-01 12 21643210 21643210 C G RECQL Missense_Mutation p.G106A 0.94 deleterious(0.01) benign(0.34) TCGA-BC-A217-01 12 41967431 41967431 G T PDZRN4 Silent p.L950L 0.23 TCGA-BC-A217-01 12 52307458 52307458 C T ACVRL1 Silent p.V143V 0.30 TCGA-BC-A217-01 12 54447739 54447739 C A HOXC4 Missense_Mutation p.N11K 0.23 tolerated(0.23) benign(0.048) TCGA-BC-A217-01 12 56030750 56030750 C A OR10P1 Silent p.G25G 0.23 TCGA-BC-A217-01 12 65448938 65448938 G C WIF1 Missense_Mutation p.C326W 0.24 deleterious(0) probably_damaging(0.999) TCGA-BC-A217-01 13 39357273 39357273 C T FREM2 Missense_Mutation p.P1903L 0.66 deleterious(0) possibly_damaging(0.74) TCGA-BC-A217-01 13 50592279 50592279 T C TRIM13 3'Flank 0.73 TCGA-BC-A217-01 14 106791051 106791051 A C IGHV3-30 Missense_Mutation p.M102R 0.14 deleterious_low_confidence(0) possibly_damaging(0.856) TCGA-BC-A217-01 14 38725365 38725365 C A CLEC14A 5'UTR 0.20 TCGA-BC-A217-01 14 64518635 64518635 G T SYNE2 Missense_Mutation p.L2668F 0.50 possibly_damaging(0.822) TCGA-BC-A217-01 14 64676089 64676089 T A SYNE2 Intron 0.57 TCGA-BC-A217-01 14 88478400 88478400 T C GPR65 3'UTR 0.32 TCGA-BC-A217-01 15 22332496 22332496 C A RP11-69H14.6 RNA 0.24 TCGA-BC-A217-01 15 41865515 41865515 G A TYRO3 Silent p.E665E 0.19 TCGA-BC-A217-01 15 42126945 42126945 C T JMJD7-PLA2G4B Silent p.C24C 0.31 TCGA-BC-A217-01 15 49148299 49148299 G A SHC4 Missense_Mutation p.H365Y 0.33 deleterious(0.04) benign(0.055) TCGA-BC-A217-01 15 94901825 94901825 G C MCTP2 Missense_Mutation p.E429Q 0.53 deleterious(0.02) benign(0.158) TCGA-BC-A217-01 16 31372494 31372494 T C ITGAX Silent p.D324D 0.66 TCGA-BC-A217-01 16 81303890 81303890 A G BCMO1 Missense_Mutation p.I324V 0.20 tolerated(0.16) benign(0.047) TCGA-BC-A217-01 16 845334 845334 C A CHTF18 Missense_Mutation p.T718N 0.51 tolerated(0.29) benign(0.03) TCGA-BC-A217-01 17 11775087 11775087 A T DNAH9 Missense_Mutation p.Y3409F 0.86 benign(0.02) TCGA-BC-A217-01 17 33749277 33749277 G T SLFN12 Silent p.L257L 0.37 TCGA-BC-A217-01 17 41345518 41345518 C T NBR1 Missense_Mutation p.H463Y 0.16 deleterious(0) possibly_damaging(0.904) TCGA-BC-A217-01 17 48629417 48629417 G A SPATA20 Silent p.A611A 0.32 TCGA-BC-A217-01 17 58120697 58120697 C A HEATR6 3'UTR 0.25 TCGA-BC-A217-01 17 648872 648872 T C GEMIN4 Missense_Mutation p.Q804R 0.31 tolerated(1) benign(0.023) TCGA-BC-A217-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.83 tolerated(0.13) possibly_damaging(0.631) TCGA-BC-A217-01 17 76888033 76888033 C A DDC8 Missense_Mutation p.G185C 0.61 tolerated(0.13) possibly_damaging(0.793) TCGA-BC-A217-01 17 8131829 8131829 A G CTC1 Missense_Mutation p.V1169A 0.09 tolerated(0.78) benign(0.002) TCGA-BC-A217-01 18 22057509 22057509 C A HRH4 Silent p.R386R 0.37 TCGA-BC-A217-01 18 22806650 22806650 T C ZNF521 Missense_Mutation p.N411S 0.55 tolerated(1) benign(0.004) TCGA-BC-A217-01 18 28650707 28650707 A T DSC2 Silent p.P745P 0.63 TCGA-BC-A217-01 18 29890226 29890226 C A GAREM Missense_Mutation p.S108I 0.28 deleterious(0) possibly_damaging(0.905) TCGA-BC-A217-01 18 32438291 32438291 A G DTNA Silent p.E438E 0.56 TCGA-BC-A217-01 18 56401614 56401614 G A MALT1 Splice_Site p.X492_splice 0.62 TCGA-BC-A217-01 18 59768329 59768329 T C PIGN Missense_Mutation p.I686V 0.64 tolerated(0.46) benign(0.047) TCGA-BC-A217-01 18 9182491 9182491 A G ANKRD12 Missense_Mutation p.M21V 0.66 deleterious(0) probably_damaging(0.983) TCGA-BC-A217-01 19 1863102 1863102 G A KLF16 Missense_Mutation p.P132L 0.19 tolerated(0.39) benign(0.114) TCGA-BC-A217-01 19 33167899 33167899 C T RGS9BP 3'UTR 0.63 TCGA-BC-A217-01 19 43358117 43358117 G C PSG10P RNA 0.37 TCGA-BC-A217-01 19 44934591 44934591 C G ZNF229 Missense_Mutation p.C122S 0.24 tolerated(1) benign(0.004) TCGA-BC-A217-01 19 48981822 48981822 A G CYTH2 Missense_Mutation p.E362G 0.08 deleterious(0) possibly_damaging(0.809) TCGA-BC-A217-01 19 51133064 51133064 G T SYT3 Missense_Mutation p.R347S 0.17 deleterious(0) possibly_damaging(0.51) TCGA-BC-A217-01 19 54823336 54823336 C A LILRA5 Silent p.G69G 0.59 TCGA-BC-A217-01 19 55111991 55111991 C A LILRA1 Missense_Mutation p.L443I 0.24 tolerated(0.09) benign(0.013) TCGA-BC-A217-01 1 110775555 110775555 G A KCNC4 3'UTR 0.67 TCGA-BC-A217-01 1 150131276 150131276 C T PLEKHO1 Missense_Mutation p.P263L 0.05 tolerated(0.68) benign(0.021) TCGA-BC-A217-01 1 150131673 150131673 C G PLEKHO1 Silent p.L395L 0.05 TCGA-BC-A217-01 1 150975295 150975295 A G FAM63A Intron 0.09 TCGA-BC-A217-01 1 151955763 151955763 T A S100A10 Missense_Mutation p.K57M 0.03 deleterious(0.01) probably_damaging(0.994) TCGA-BC-A217-01 1 159166944 159166944 G T CADM3 Intron 0.35 TCGA-BC-A217-01 1 163044511 163044511 A G RGS4 3'UTR 0.50 TCGA-BC-A217-01 1 182823304 182823304 A G DHX9 Missense_Mutation p.D206G 0.59 deleterious(0) probably_damaging(0.982) TCGA-BC-A217-01 1 200311816 200311816 C T LINC00862 RNA 0.50 TCGA-BC-A217-01 1 20657389 20657389 C A VWA5B1 Missense_Mutation p.N495K 0.55 tolerated(0.25) benign(0.038) TCGA-BC-A217-01 1 22816452 22816452 C G ZBTB40 Missense_Mutation p.P4R 0.45 deleterious(0) benign(0.218) TCGA-BC-A217-01 1 240637481 240637481 T A FMN2 3'UTR 0.44 TCGA-BC-A217-01 1 34312563 34312563 T C CSMD2 Missense_Mutation p.S279G 0.26 deleterious(0) possibly_damaging(0.887) TCGA-BC-A217-01 1 35227774 35227774 G T GJB4 3'UTR 0.31 TCGA-BC-A217-01 1 4834562 4834562 G A AJAP1 3'UTR 0.28 TCGA-BC-A217-01 1 65775451 65775451 G A DNAJC6 Missense_Mutation p.R8Q 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.651) TCGA-BC-A217-01 1 75805298 75805298 C A SLC44A5 Missense_Mutation p.D24Y 0.21 deleterious(0) probably_damaging(0.982) TCGA-BC-A217-01 20 34130635 34130635 C A ERGIC3 Missense_Mutation p.F104L 0.37 tolerated(0.06) benign(0.014) TCGA-BC-A217-01 20 44686186 44686186 T G SLC12A5 Missense_Mutation p.L1121R 0.39 deleterious(0) probably_damaging(0.998) TCGA-BC-A217-01 20 44856179 44856179 C - CDH22 Frame_Shift_Del p.G213Afs*13 0.44 TCGA-BC-A217-01 21 42622762 42622762 T A BACE2 Silent p.P356P 0.47 TCGA-BC-A217-01 21 46396679 46396679 G A FAM207A Silent p.L218L 0.18 TCGA-BC-A217-01 22 17662466 17662466 C A CECR1 Missense_Mutation p.K481N 0.50 deleterious(0.03) benign(0.019) TCGA-BC-A217-01 22 31533849 31533849 T A PLA2G3 Nonsense_Mutation p.K305* 0.55 TCGA-BC-A217-01 22 35717981 35717981 A G TOM1 Missense_Mutation p.K56R 0.32 deleterious(0.03) probably_damaging(0.996) TCGA-BC-A217-01 22 44893536 44893536 C A LDOC1L 5'UTR 0.75 TCGA-BC-A217-01 2 109381074 109381074 G A RANBP2 Missense_Mutation p.S1360N 0.47 tolerated(0.34) benign(0.285) TCGA-BC-A217-01 2 155555841 155555841 C A KCNJ3 Missense_Mutation p.S185Y 0.20 deleterious(0) probably_damaging(1) TCGA-BC-A217-01 2 168100239 168100239 G T XIRP2 Missense_Mutation p.L779F 0.51 probably_damaging(1) TCGA-BC-A217-01 2 179170928 179170928 A G OSBPL6 Missense_Mutation p.K6R 0.55 tolerated_low_confidence(0.55) benign(0.002) TCGA-BC-A217-01 2 191155206 191155206 A C HIBCH Missense_Mutation p.S104A 0.43 tolerated(0.6) benign(0) TCGA-BC-A217-01 2 196825086 196825086 A G DNAH7 Missense_Mutation p.L930S 0.43 deleterious(0) probably_damaging(0.976) TCGA-BC-A217-01 2 201400832 201400832 G C SGOL2 Missense_Mutation p.L118F 0.39 deleterious(0) probably_damaging(0.995) TCGA-BC-A217-01 2 204193320 204193320 G T ABI2 Missense_Mutation p.R28L 0.43 deleterious(0.02) benign(0.017) TCGA-BC-A217-01 2 207530732 207530732 G T DYTN Missense_Mutation p.N334K 0.47 tolerated(0.06) benign(0.008) TCGA-BC-A217-01 2 208477757 208477757 A G METTL21A 3'UTR 0.47 TCGA-BC-A217-01 2 27528584 27528584 G C TRIM54 Missense_Mutation p.G290R 0.43 deleterious(0.02) possibly_damaging(0.825) TCGA-BC-A217-01 2 85361140 85361140 C A TCF7L1 Missense_Mutation p.A84E 0.59 deleterious(0.03) benign(0.008) TCGA-BC-A217-01 3 113737618 113737618 A T KIAA1407 Missense_Mutation p.L357Q 0.22 deleterious(0.05) probably_damaging(0.997) TCGA-BC-A217-01 3 120365198 120365198 T A HGD Missense_Mutation p.S189C 0.52 deleterious(0.03) benign(0.39) TCGA-BC-A217-01 3 123411616 123411616 G A MYLK Silent p.G1177G 0.46 TCGA-BC-A217-01 3 157820591 157820591 C T SHOX2 Missense_Mutation p.R168Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-BC-A217-01 3 185318579 185318579 G A SENP2 Missense_Mutation p.D129N 0.47 tolerated(0.08) possibly_damaging(0.765) TCGA-BC-A217-01 3 195447853 195447853 C G MUC20 5'UTR 0.24 TCGA-BC-A217-01 3 33134374 33134374 C G TMPPE Silent p.L438L 0.17 TCGA-BC-A217-01 3 47030821 47030821 C G NBEAL2 Silent p.L141L 0.42 TCGA-BC-A217-01 3 47281268 47281268 G A KIF9 Intron 0.49 TCGA-BC-A217-01 3 47281269 47281269 C T KIF9 Intron 0.48 TCGA-BC-A217-01 3 48630129 48630129 T C COL7A1 Missense_Mutation p.N284D 0.21 unknown(0) TCGA-BC-A217-01 3 77629195 77629195 A C ROBO2 Missense_Mutation p.Q825P 0.89 tolerated(0.31) benign(0.418) TCGA-BC-A217-01 4 113970842 113970842 C A ANK2 5'UTR 0.76 TCGA-BC-A217-01 4 164272591 164272591 T A NPY5R Missense_Mutation p.V389E 0.56 deleterious(0) probably_damaging(0.958) TCGA-BC-A217-01 4 169201507 169201507 C G DDX60 Missense_Mutation p.E653Q 0.58 deleterious(0.04) benign(0.259) TCGA-BC-A217-01 4 169382958 169382958 C T DDX60L Nonsense_Mutation p.W166* 0.33 TCGA-BC-A217-01 4 30724910 30724910 C A PCDH7 Missense_Mutation p.S622R 0.41 deleterious(0.01) benign(0.373) TCGA-BC-A217-01 4 30725405 30725405 T A PCDH7 Missense_Mutation p.N787K 0.47 deleterious(0) probably_damaging(0.997) TCGA-BC-A217-01 4 62936605 62936605 T C LPHN3 Silent p.A1463A 0.65 TCGA-BC-A217-01 4 7026792 7026792 T C TBC1D14 Missense_Mutation p.F607L 0.19 deleterious(0.04) probably_damaging(0.983) TCGA-BC-A217-01 4 944240 944240 C A TMEM175 Missense_Mutation p.A75E 0.43 tolerated(0.2) probably_damaging(0.955) TCGA-BC-A217-01 5 10992757 10992757 C A CTNND2 Silent p.S1039S 0.49 TCGA-BC-A217-01 5 132534838 132534838 C G FSTL4 Missense_Mutation p.E826D 0.36 deleterious(0) possibly_damaging(0.786) TCGA-BC-A217-01 5 140209550 140209550 G A PCDHA6 Missense_Mutation p.G625E 0.40 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-BC-A217-01 5 140347607 140347607 A G PCDHAC2 Missense_Mutation p.Y419C 0.51 deleterious(0) probably_damaging(1) TCGA-BC-A217-01 5 140554546 140554546 G A PCDHB7 Silent p.R710R 0.17 TCGA-BC-A217-01 5 145895523 145895523 C T GPR151 Missense_Mutation p.V52M 0.16 tolerated(0.09) benign(0.014) TCGA-BC-A217-01 5 178040784 178040784 A T CLK4 Silent p.A201A 0.39 TCGA-BC-A217-01 5 178040789 178040789 C T CLK4 Missense_Mutation p.A200T 0.39 deleterious(0.02) possibly_damaging(0.907) TCGA-BC-A217-01 5 1816135 1816135 G T NDUFS6 3'UTR 0.22 TCGA-BC-A217-01 5 3599577 3599577 C A IRX1 Missense_Mutation p.T172K 0.51 deleterious(0) probably_damaging(0.993) TCGA-BC-A217-01 6 146755325 146755325 C T GRM1 Missense_Mutation p.S993F 0.32 tolerated_low_confidence(0.1) benign(0.017) TCGA-BC-A217-01 6 152583243 152583243 C A SYNE1 Missense_Mutation p.W6299L 0.24 probably_damaging(0.998) TCGA-BC-A217-01 6 26250628 26250628 T C HIST1H3F Missense_Mutation p.Q69R 0.52 deleterious_low_confidence(0.01) probably_damaging(0.967) TCGA-BC-A217-01 6 31608198 31608198 T A BAG6 Silent p.S1004S 0.59 TCGA-BC-A217-01 6 31777908 31777908 T C HSPA1L Silent p.Q614Q 0.29 TCGA-BC-A217-01 6 36712088 36712088 G T CPNE5 Silent p.P482P 0.52 TCGA-BC-A217-01 6 56480865 56480865 C T DST Intron 0.25 TCGA-BC-A217-01 6 72968729 72968729 C A RIMS1 Missense_Mutation p.P990T 0.40 tolerated(0.25) probably_damaging(0.999) TCGA-BC-A217-01 6 93953063 93953063 T A EPHA7 3'UTR 0.21 TCGA-BC-A217-01 6 96659889 96659889 C T FUT9 3'UTR 0.20 TCGA-BC-A217-01 7 103276844 103276844 C T RELN Missense_Mutation p.S714N 0.38 tolerated(0.44) possibly_damaging(0.696) TCGA-BC-A217-01 7 131912231 131912231 G A PLXNA4 Missense_Mutation p.P621S 0.45 deleterious(0.02) possibly_damaging(0.858) TCGA-BC-A217-01 7 44005510 44005510 C A RP5-1165K10.2 RNA 0.27 TCGA-BC-A217-01 7 81339555 81339555 G T HGF Silent p.P483P 0.46 TCGA-BC-A217-01 7 81339556 81339556 G T HGF Missense_Mutation p.P483H 0.48 deleterious(0.03) possibly_damaging(0.827) TCGA-BC-A217-01 8 10467732 10467732 T A RP1L1 Missense_Mutation p.L1292F 0.50 benign(0.061) TCGA-BC-A217-01 8 130777987 130777987 C G GSDMC Missense_Mutation p.D153H 0.33 tolerated(0.15) benign(0.305) TCGA-BC-A217-01 8 2041829 2041829 A G MYOM2 Missense_Mutation p.Q679R 0.12 tolerated(0.18) possibly_damaging(0.61) TCGA-BC-A217-01 8 77618337 77618337 G A ZFHX4 Missense_Mutation p.G672S 0.17 probably_damaging(0.931) TCGA-BC-A217-01 8 82192871 82192871 T C FABP5 Missense_Mutation p.V14A 0.10 deleterious(0.05) benign(0.035) TCGA-BC-A217-01 8 92082456 92082456 T A OTUD6B 5'UTR 0.47 TCGA-BC-A217-01 9 104449365 104449365 C A GRIN3A Missense_Mutation p.D273Y 0.35 tolerated(1) possibly_damaging(0.629) TCGA-BC-A217-01 9 107510025 107510025 T A NIPSNAP3A 5'UTR 0.73 TCGA-BC-A217-01 9 136402628 136402628 G A ADAMTSL2 Silent p.G64G 0.42 TCGA-BC-A217-01 9 175754 175754 A T CBWD1 Missense_Mutation p.I62N 0.31 deleterious(0) probably_damaging(0.994) TCGA-BC-A217-01 9 79824389 79824389 C T VPS13A Nonsense_Mutation p.Q146* 0.53 TCGA-BC-A217-01 X 102507925 102507925 T C TCEAL8 3'UTR 0.22 TCGA-BC-A217-01 X 105011223 105011223 T C IL1RAPL2 Silent p.L544L 0.51 TCGA-BC-A217-01 X 119669737 119669737 A C CUL4B Missense_Mutation p.L721R 0.23 deleterious(0) probably_damaging(0.999) TCGA-BC-A217-01 X 149014431 149014432 - T MAGEA8 3'UTR 0.38 TCGA-BC-A217-01 X 153055245 153055245 G A IDH3G Missense_Mutation p.H90Y 0.27 tolerated(0.74) benign(0.063) TCGA-BC-A217-01 X 27840583 27840583 T C MAGEB10 3'UTR 0.22 TCGA-BC-A3KF-01 10 124909334 124909334 T C HMX2 Missense_Mutation p.Y173H 0.46 deleterious(0) probably_damaging(1) TCGA-BC-A3KF-01 10 13040436 13040436 T C CCDC3 Missense_Mutation p.R151G 0.27 deleterious(0) possibly_damaging(0.451) TCGA-BC-A3KF-01 10 134523851 134523851 T - INPP5A Frame_Shift_Del p.L180Wfs*2 0.29 TCGA-BC-A3KF-01 10 46961965 46961965 A G SYT15 3'UTR 0.18 TCGA-BC-A3KF-01 11 111784335 111784335 A G HSPB2 Missense_Mutation p.T89A 0.07 tolerated(0.26) benign(0.102) TCGA-BC-A3KF-01 11 125474114 125474114 A T STT3A Silent p.R160R 0.75 TCGA-BC-A3KF-01 11 33308924 33308924 G T HIPK3 Missense_Mutation p.D322Y 0.43 deleterious(0) probably_damaging(1) TCGA-BC-A3KF-01 11 55579735 55579735 G T OR5L1 Missense_Mutation p.G265C 0.42 deleterious(0) probably_damaging(0.958) TCGA-BC-A3KF-01 11 55579736 55579736 G T OR5L1 Missense_Mutation p.G265V 0.42 deleterious(0.03) possibly_damaging(0.865) TCGA-BC-A3KF-01 11 67352159 67352159 T C GSTP1 Missense_Mutation p.Y50H 0.42 deleterious(0) probably_damaging(0.977) TCGA-BC-A3KF-01 11 71277087 71277087 T G KRTAP5-10 Missense_Mutation p.S152A 0.35 unknown(0) TCGA-BC-A3KF-01 11 9597791 9597791 A G WEE1 Missense_Mutation p.D266G 0.09 tolerated(0.14) benign(0.108) TCGA-BC-A3KF-01 11 992671 992671 A T AP2A2 Nonsense_Mutation p.K480* 0.41 TCGA-BC-A3KF-01 12 10766119 10766119 T C MAGOHB Missense_Mutation p.S5G 0.05 tolerated(0.12) benign(0) TCGA-BC-A3KF-01 12 117922348 117922348 C G KSR2 Missense_Mutation p.G775R 0.50 deleterious(0) probably_damaging(1) TCGA-BC-A3KF-01 12 122296730 122296730 G A HPD 5'UTR 0.22 TCGA-BC-A3KF-01 12 124158356 124158356 A T TCTN2 Silent p.S154S 0.54 TCGA-BC-A3KF-01 12 125451369 125451369 T A DHX37 Silent p.S520S 0.40 TCGA-BC-A3KF-01 12 14840921 14840921 G T GUCY2C Missense_Mutation p.S98R 0.73 deleterious(0) probably_damaging(0.931) TCGA-BC-A3KF-01 12 27128524 27128524 G A TM7SF3 Missense_Mutation p.S452F 0.72 tolerated(0.1) benign(0.002) TCGA-BC-A3KF-01 12 80714407 80714407 A T OTOGL Silent p.T1327T 0.61 TCGA-BC-A3KF-01 13 44433973 44433973 T C CCDC122 Silent p.A130A 0.68 TCGA-BC-A3KF-01 13 66879031 66879031 G A PCDH9 Missense_Mutation p.P1157L 0.58 deleterious(0.01) benign(0.257) TCGA-BC-A3KF-01 13 86369191 86369191 T - SLITRK6 Frame_Shift_Del p.T485Lfs*3 0.48 TCGA-BC-A3KF-01 14 106805416 106805416 G T IGHV4-31 Missense_Mutation p.S49R 0.08 deleterious_low_confidence(0.03) benign(0.028) TCGA-BC-A3KF-01 14 21467501 21467501 A G SLC39A2 5'UTR 0.31 TCGA-BC-A3KF-01 14 38725216 38725216 C A CLEC14A Silent p.A4A 0.55 TCGA-BC-A3KF-01 14 45623916 45623916 A G FANCM Silent p.K400K 0.32 TCGA-BC-A3KF-01 14 58711598 58711598 C T PSMA3 5'UTR 0.63 TCGA-BC-A3KF-01 15 31355371 31355371 T C TRPM1 Silent p.G322G 0.38 TCGA-BC-A3KF-01 15 35222481 35222481 T A AQR Missense_Mutation p.Y331F 0.31 deleterious(0) possibly_damaging(0.665) TCGA-BC-A3KF-01 15 64275877 64275877 G A DAPK2 Missense_Mutation p.R57W 0.16 deleterious(0) probably_damaging(0.999) TCGA-BC-A3KF-01 15 79587136 79587136 A T ANKRD34C Nonsense_Mutation p.R504* 0.60 TCGA-BC-A3KF-01 16 15223917 15223917 T C RP11-1186N24.5 RNA 0.34 TCGA-BC-A3KF-01 16 2136835 2136854 ATGACTCCGGTGAGGACTTC - TSC2 Frame_Shift_Del p.N1651Kfs*48 0.43 TCGA-BC-A3KF-01 16 46918800 46918800 A G GPT2 Missense_Mutation p.K58R 0.06 tolerated(0.57) benign(0.002) TCGA-BC-A3KF-01 16 67916365 67916365 G A EDC4 Missense_Mutation p.D1104N 0.35 tolerated(0.84) benign(0.052) TCGA-BC-A3KF-01 16 70688456 70688456 T A IL34 Missense_Mutation p.L15H 0.35 deleterious(0) probably_damaging(0.998) TCGA-BC-A3KF-01 17 33807038 33807038 C A SLFN12L Missense_Mutation p.R64L 0.43 deleterious(0.03) possibly_damaging(0.66) TCGA-BC-A3KF-01 17 40342899 40342899 G A GHDC Nonsense_Mutation p.R369* 0.44 TCGA-BC-A3KF-01 17 40500452 40500452 A T STAT3 Missense_Mutation p.M28K 0.45 deleterious(0) probably_damaging(1) TCGA-BC-A3KF-01 17 5998464 5998464 A G WSCD1 Missense_Mutation p.N257S 0.06 tolerated(0.06) possibly_damaging(0.773) TCGA-BC-A3KF-01 17 70120374 70120374 G T SOX9 Missense_Mutation p.G459V 0.43 tolerated(0.15) benign(0.103) TCGA-BC-A3KF-01 17 78336932 78336932 A G RNF213 Missense_Mutation p.R3796G 0.31 benign(0.001) TCGA-BC-A3KF-01 18 15316521 15316521 C T RNU6-721P 3'Flank 0.33 TCGA-BC-A3KF-01 18 61232745 61232745 T C SERPINB12 Missense_Mutation p.V238A 0.10 tolerated(0.45) benign(0.04) TCGA-BC-A3KF-01 19 10112330 10112330 T C COL5A3 Missense_Mutation p.D327G 0.39 unknown(0) TCGA-BC-A3KF-01 19 16178424 16178424 A C TPM4 5'UTR 0.33 TCGA-BC-A3KF-01 19 40486011 40486011 G A PSMC4 Silent p.L292L 0.41 TCGA-BC-A3KF-01 19 48305011 48305011 A T TPRX1 3'UTR 0.48 TCGA-BC-A3KF-01 19 50100971 50100971 A T PRR12 Missense_Mutation p.S1127C 0.37 probably_damaging(0.994) TCGA-BC-A3KF-01 19 52130941 52130941 T C SIGLEC5 Silent p.R352R 0.35 TCGA-BC-A3KF-01 19 55832397 55832397 C A TMEM150B Missense_Mutation p.G3V 0.46 deleterious(0.01) possibly_damaging(0.776) TCGA-BC-A3KF-01 19 59061183 59061183 G T TRIM28 Missense_Mutation p.D688Y 0.84 tolerated(0.08) possibly_damaging(0.708) TCGA-BC-A3KF-01 1 103481268 103481268 C A COL11A1 Missense_Mutation p.A482S 0.35 probably_damaging(0.999) TCGA-BC-A3KF-01 1 114500750 114500750 T C HIPK1 Silent p.D606D 0.37 TCGA-BC-A3KF-01 1 120926987 120926987 G T FCGR1B 3'UTR 0.20 TCGA-BC-A3KF-01 1 12780887 12780887 A G AADACL3 Missense_Mutation p.T73A 0.07 tolerated(0.25) benign(0.239) TCGA-BC-A3KF-01 1 155180142 155180142 T C MTX1 Silent p.Y178Y 0.41 TCGA-BC-A3KF-01 1 179520268 179520268 A T NPHS2 3'UTR 0.45 TCGA-BC-A3KF-01 1 196451495 196451495 C G KCNT2 Missense_Mutation p.W97S 0.37 deleterious(0) probably_damaging(0.985) TCGA-BC-A3KF-01 1 212588182 212588182 C T TMEM206 5'UTR 0.40 TCGA-BC-A3KF-01 1 221875667 221875667 A G DUSP10 3'UTR 0.46 TCGA-BC-A3KF-01 1 241262022 241262022 C T RGS7 Missense_Mutation p.G40E 0.41 deleterious(0) probably_damaging(0.999) TCGA-BC-A3KF-01 1 246754974 246754974 A T CNST Missense_Mutation p.D37V 0.31 deleterious(0) probably_damaging(1) TCGA-BC-A3KF-01 1 27680404 27680404 A G SYTL1 3'UTR 0.45 TCGA-BC-A3KF-01 1 37282833 37282833 C A GRIK3 Missense_Mutation p.G640V 0.37 deleterious(0) probably_damaging(1) TCGA-BC-A3KF-01 1 65255125 65255125 A G RAVER2 Missense_Mutation p.K345E 0.34 deleterious(0.03) possibly_damaging(0.46) TCGA-BC-A3KF-01 20 17539357 17539357 C T BFSP1 5'UTR 0.43 TCGA-BC-A3KF-01 20 3007357 3007357 A T PTPRA Missense_Mutation p.N547Y 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-BC-A3KF-01 20 33575459 33575459 A T MYH7B Missense_Mutation p.K458M 0.23 probably_damaging(0.965) TCGA-BC-A3KF-01 20 35627127 35627127 C A RBL1 3'UTR 0.22 TCGA-BC-A3KF-01 20 4706087 4706087 C A PRND 3'UTR 0.37 TCGA-BC-A3KF-01 21 17163836 17163836 C T USP25 Silent p.S136S 0.06 TCGA-BC-A3KF-01 21 30329699 30329699 C T LTN1 Silent p.P995P 0.05 TCGA-BC-A3KF-01 21 47783761 47783761 C T PCNT Missense_Mutation p.R841W 0.51 possibly_damaging(0.876) TCGA-BC-A3KF-01 22 21922044 21922044 G T UBE2L3 Intron 0.35 TCGA-BC-A3KF-01 22 23162121 23162121 C T IGLV3-9 Missense_Mutation p.R72W 0.49 deleterious(0.02) benign(0.229) TCGA-BC-A3KF-01 22 26887637 26887637 G A SRRD Silent p.%3D 0.69 TCGA-BC-A3KF-01 22 31485773 31485773 T G SMTN Missense_Mutation p.V187G 0.36 tolerated(0.52) probably_damaging(0.997) TCGA-BC-A3KF-01 22 44892949 44892949 C T LDOC1L Missense_Mutation p.R163H 0.36 tolerated(0.54) probably_damaging(0.923) TCGA-BC-A3KF-01 2 113950141 113950141 G A PSD4 Missense_Mutation p.E605K 0.60 deleterious(0) probably_damaging(0.996) TCGA-BC-A3KF-01 2 121748010 121748010 C A GLI2 Missense_Mutation p.A1507D 0.65 tolerated(0.66) benign(0.245) TCGA-BC-A3KF-01 2 152128184 152128184 C A NMI Missense_Mutation p.V233F 0.58 deleterious(0) probably_damaging(0.996) TCGA-BC-A3KF-01 2 167297978 167297978 G A SCN7A Silent p.D695D 0.69 TCGA-BC-A3KF-01 2 179577610 179577610 A T TTN Missense_Mutation p.F9048I 0.37 TCGA-BC-A3KF-01 2 219246999 219246999 C A SLC11A1 5'UTR 0.88 TCGA-BC-A3KF-01 2 55254181 55254181 T C RTN4 Missense_Mutation p.K352E 0.43 tolerated(0.88) benign(0.002) TCGA-BC-A3KF-01 2 89476070 89476070 G A IGKV2-24 Silent p.T34T 0.43 TCGA-BC-A3KF-01 2 99439342 99439342 T C KIAA1211L Missense_Mutation p.E465G 0.33 tolerated(0.27) possibly_damaging(0.607) TCGA-BC-A3KF-01 3 121158914 121158914 T C POLQ Silent p.G2438G 0.13 TCGA-BC-A3KF-01 3 136085882 136085882 T C STAG1 Missense_Mutation p.H863R 0.42 deleterious(0) probably_damaging(0.99) TCGA-BC-A3KF-01 3 14220101 14220101 T G LSM3 5'UTR 0.34 TCGA-BC-A3KF-01 3 147128660 147128660 C A ZIC1 Missense_Mutation p.T254K 0.37 deleterious(0) probably_damaging(0.994) TCGA-BC-A3KF-01 3 150644729 150644729 A T CLRN1 3'Flank 0.36 TCGA-BC-A3KF-01 3 159711260 159711260 G C IL12A Missense_Mutation p.R134T 0.39 tolerated(0.38) possibly_damaging(0.524) TCGA-BC-A3KF-01 3 25670532 25670532 A T TOP2B Silent p.I593I 0.50 TCGA-BC-A3KF-01 3 43388906 43388906 G A SNRK Silent p.A385A 0.41 TCGA-BC-A3KF-01 3 62385129 62385129 C T CADPS Silent p.Q1338Q 0.36 TCGA-BC-A3KF-01 3 64617541 64617541 C G ADAMTS9 Missense_Mutation p.G746R 0.39 deleterious(0) probably_damaging(0.997) TCGA-BC-A3KF-01 3 8607167 8607167 A T LMCD1 Missense_Mutation p.Y258F 0.42 tolerated(0.12) probably_damaging(0.948) TCGA-BC-A3KF-01 4 71275489 71275489 C T PROL1 Silent p.T148T 0.69 TCGA-BC-A3KF-01 5 159992332 159992332 A G ATP10B 3'UTR 0.09 TCGA-BC-A3KF-01 5 179041762 179041762 T C HNRNPH1 3'UTR 0.29 TCGA-BC-A3KF-01 5 45303811 45303811 A G HCN1 Missense_Mutation p.I503T 0.42 deleterious(0) probably_damaging(0.999) TCGA-BC-A3KF-01 5 61669513 61669513 G A KIF2A Splice_Site p.X587_splice 0.45 TCGA-BC-A3KF-01 5 64920133 64920133 T A TRIM23 5'UTR 0.33 TCGA-BC-A3KF-01 5 74645959 74645959 T G HMGCR Missense_Mutation p.S217A 0.35 tolerated(0.12) possibly_damaging(0.447) TCGA-BC-A3KF-01 6 31778417 31778417 A G HSPA1L Missense_Mutation p.Y445H 0.32 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BC-A3KF-01 6 41162310 41162310 G A TREML2 Missense_Mutation p.A213V 0.26 tolerated(1) benign(0.003) TCGA-BC-A3KF-01 6 42227243 42227243 G T TRERF1 Silent p.P701P 0.38 TCGA-BC-A3KF-01 6 42227244 42227244 G T TRERF1 Missense_Mutation p.P701H 0.37 tolerated(0.07) possibly_damaging(0.893) TCGA-BC-A3KF-01 6 9897068 9897068 C T OFCC1 Intron 0.31 TCGA-BC-A3KF-01 7 155295731 155295731 T C CNPY1 3'UTR 0.21 TCGA-BC-A3KF-01 7 5355649 5355649 C G TNRC18 Missense_Mutation p.G2267A 0.43 possibly_damaging(0.794) TCGA-BC-A3KF-01 7 66785160 66785160 A T STAG3L4 RNA 0.41 TCGA-BC-A3KF-01 7 98460878 98460878 G T TMEM130 Silent p.T77T 0.41 TCGA-BC-A3KF-01 8 103300480 103300480 C T UBR5 Silent p.E1576E 0.25 TCGA-BC-A3KF-01 8 110457871 110457871 A G PKHD1L1 Missense_Mutation p.R1925G 0.35 tolerated(0.38) benign(0.009) TCGA-BC-A3KF-01 8 110655201 110655201 C T SYBU Intron 0.25 TCGA-BC-A3KF-01 8 140631049 140631049 A G KCNK9 Missense_Mutation p.C193R 0.32 deleterious(0) probably_damaging(0.977) TCGA-BC-A3KF-01 8 144680963 144680963 T G TIGD5 Missense_Mutation p.L297R 0.22 deleterious(0.03) probably_damaging(0.98) TCGA-BC-A3KF-01 8 144944633 144944633 C T EPPK1 Missense_Mutation p.G930E 0.37 probably_damaging(0.989) TCGA-BC-A3KF-01 8 145255353 145255353 A G MROH1 Silent p.L350L 0.29 TCGA-BC-A3KF-01 8 24811079 24811079 T A CTD-2168K21.2 5'Flank 0.79 TCGA-BC-A3KF-01 8 73849087 73849087 G A KCNB2 Silent p.L499L 0.22 TCGA-BC-A3KF-01 8 76456117 76456118 - ACAGAGC HNF4G Frame_Shift_Ins p.T57Qfs*13 0.12 TCGA-BC-A3KF-01 8 90801575 90801575 A G RIPK2 Missense_Mutation p.K384E 0.30 tolerated(0.87) benign(0.01) TCGA-BC-A3KF-01 9 124584786 124584786 C T TTLL11 3'UTR 0.33 TCGA-BC-A3KF-01 9 130911936 130911936 C A LCN2 Missense_Mutation p.D44E 0.39 tolerated(0.3) benign(0.004) TCGA-BC-A3KF-01 9 136578161 136578161 T C SARDH Silent p.A412A 0.34 TCGA-BC-A3KF-01 9 36169807 36169807 A T CCIN Missense_Mutation p.E103V 0.38 deleterious(0.01) benign(0.179) TCGA-BC-A3KF-01 9 84564505 84564505 T C RP11-383M4.6 Intron 0.48 TCGA-BC-A3KF-01 9 86504072 86504072 T C KIF27 Missense_Mutation p.K636E 0.36 tolerated(1) benign(0) TCGA-BC-A3KF-01 X 103045665 103045665 G A PLP1 3'UTR 0.45 TCGA-BC-A3KF-01 X 21875262 21875262 T A YY2 Silent p.P220P 0.41 TCGA-BC-A3KF-01 X 73814206 73814206 T A RLIM Missense_Mutation p.E63V 0.33 deleterious(0) unknown(0) TCGA-BC-A3KF-01 X 76856034 76856034 C T ATRX Splice_Site p.X1856_splice 0.46 TCGA-BC-A3KF-01 X 91133110 91133110 T A PCDH11X Missense_Mutation p.V624D 0.36 deleterious(0) probably_damaging(0.995) TCGA-BC-A5W4-01 10 94733850 94733850 T C EXOC6 Missense_Mutation p.L605P 0.91 deleterious(0) probably_damaging(0.997) TCGA-BC-A5W4-01 10 95111015 95111015 G A MYOF Missense_Mutation p.A1287V 0.23 tolerated(0.19) possibly_damaging(0.533) TCGA-BC-A5W4-01 11 373809 373809 C T B4GALNT4 Missense_Mutation p.S255L 0.38 deleterious(0) probably_damaging(0.998) TCGA-BC-A5W4-01 11 56468748 56468748 T C OR9G1 Silent p.D295D 0.13 TCGA-BC-A5W4-01 11 57466587 57466587 G T ZDHHC5 Missense_Mutation p.R560L 0.23 tolerated(0.06) benign(0.063) TCGA-BC-A5W4-01 11 71715142 71715151 CAGCCTGCAA - NUMA1 Splice_Site p.X2042_splice 0.22 TCGA-BC-A5W4-01 11 82571056 82571056 C A PRCP Missense_Mutation p.G112V 0.25 deleterious(0) probably_damaging(1) TCGA-BC-A5W4-01 12 2229596 2229596 G T CACNA1C Silent p.L159L 0.85 TCGA-BC-A5W4-01 12 42853904 42853904 C T PRICKLE1 Missense_Mutation p.A735T 0.37 tolerated(0.08) benign(0.004) TCGA-BC-A5W4-01 13 36700222 36700222 G A DCLK1 Missense_Mutation p.A18V 0.85 tolerated_low_confidence(0.58) unknown(0) TCGA-BC-A5W4-01 14 107211227 107211227 A T IGHV3-73 Missense_Mutation p.V21E 0.48 tolerated_low_confidence(0.07) benign(0.387) TCGA-BC-A5W4-01 14 30066720 30066720 G T PRKD1 Missense_Mutation p.P804H 0.53 deleterious(0) probably_damaging(0.996) TCGA-BC-A5W4-01 15 31294718 31294718 T A TRPM1 Missense_Mutation p.K1412N 0.43 tolerated_low_confidence(0.48) benign(0) TCGA-BC-A5W4-01 15 34393819 34393819 G C EMC7 Missense_Mutation p.H74Q 0.18 tolerated(0.14) possibly_damaging(0.727) TCGA-BC-A5W4-01 15 43622043 43622043 G C LCMT2 Missense_Mutation p.F215L 0.55 deleterious(0) possibly_damaging(0.751) TCGA-BC-A5W4-01 15 70371710 70371710 C A TLE3 Intron 0.57 TCGA-BC-A5W4-01 15 90611162 90611162 C T ZNF710 Missense_Mutation p.R265C 0.60 deleterious_low_confidence(0) benign(0.265) TCGA-BC-A5W4-01 16 4924702 4924702 C A UBN1 Missense_Mutation p.S764Y 0.22 deleterious(0) possibly_damaging(0.701) TCGA-BC-A5W4-01 16 50263329 50263329 T A PAPD5 3'UTR 0.46 TCGA-BC-A5W4-01 16 88502790 88502790 C T ZNF469 Missense_Mutation p.A2943V 0.37 benign(0.041) TCGA-BC-A5W4-01 17 29622317 29622317 A T OMG Missense_Mutation p.S345T 0.31 tolerated(0.28) benign(0.047) TCGA-BC-A5W4-01 17 42268309 42268309 A C TMUB2 3'UTR 0.50 TCGA-BC-A5W4-01 17 47915949 47915949 A G TAC4 3'UTR 0.33 TCGA-BC-A5W4-01 17 7577111 7577111 G C TP53 Missense_Mutation p.A276G 0.88 deleterious(0.01) probably_damaging(0.951) TCGA-BC-A5W4-01 18 5428441 5428441 C G EPB41L3 Missense_Mutation p.M312I 0.44 deleterious(0) possibly_damaging(0.511) TCGA-BC-A5W4-01 18 9255937 9255939 CTG - ANKRD12 In_Frame_Del p.A893del 0.28 TCGA-BC-A5W4-01 19 18099244 18099244 C T KCNN1 Silent p.L360L 0.41 TCGA-BC-A5W4-01 19 38633281 38633281 G C SIPA1L3 Missense_Mutation p.R1155P 0.41 tolerated(0.1) probably_damaging(0.935) TCGA-BC-A5W4-01 19 4817368 4817368 G T TICAM1 Missense_Mutation p.T341N 0.43 tolerated(0.12) benign(0.215) TCGA-BC-A5W4-01 19 49464295 49464295 C T BAX Missense_Mutation p.P200S 0.48 unknown(0) TCGA-BC-A5W4-01 19 52149062 52149062 C T SIGLEC14 Missense_Mutation p.E225K 0.46 deleterious(0.05) benign(0.308) TCGA-BC-A5W4-01 19 55378066 55378066 G A KIR3DL2 Silent p.Q416Q 0.17 TCGA-BC-A5W4-01 19 56321586 56321586 G A NLRP11 Silent p.Y130Y 0.52 TCGA-BC-A5W4-01 1 103480065 103480065 A T COL11A1 Splice_Site p.X524_splice 0.44 TCGA-BC-A5W4-01 1 109814047 109814047 G A CELSR2 Silent p.L2572L 0.48 TCGA-BC-A5W4-01 1 118535171 118535171 G A SPAG17 Missense_Mutation p.P1760L 0.48 deleterious(0) probably_damaging(1) TCGA-BC-A5W4-01 1 144189177 144189177 C T NBPF8 Silent p.D1972D 0.19 TCGA-BC-A5W4-01 1 151258940 151258940 C T ZNF687 Missense_Mutation p.S58F 0.50 deleterious(0.03) benign(0.165) TCGA-BC-A5W4-01 1 229586330 229586330 C T NUP133 Missense_Mutation p.R1041K 0.34 tolerated(0.25) benign(0.123) TCGA-BC-A5W4-01 1 23698088 23698088 A G C1orf213 3'UTR 0.25 TCGA-BC-A5W4-01 1 6038329 6038329 C A NPHP4 Splice_Site p.X93_splice 0.52 TCGA-BC-A5W4-01 1 77528719 77528719 G A ST6GALNAC5 Missense_Mutation p.C280Y 0.50 probably_damaging(0.997) TCGA-BC-A5W4-01 20 30193847 30193847 T G ID1 Intron 0.33 TCGA-BC-A5W4-01 20 40045242 40045242 C T CHD6 Missense_Mutation p.A2158T 0.32 tolerated(0.33) benign(0.007) TCGA-BC-A5W4-01 20 6759153 6759153 G T BMP2 Missense_Mutation p.R203M 0.47 deleterious(0.02) benign(0.358) TCGA-BC-A5W4-01 20 9365037 9365037 A G PLCB4 Missense_Mutation p.Q348R 0.47 deleterious(0) probably_damaging(0.997) TCGA-BC-A5W4-01 21 46271493 46271493 G A PTTG1IP 3'UTR 0.42 TCGA-BC-A5W4-01 2 10567088 10567088 G A HPCAL1 3'UTR 0.38 TCGA-BC-A5W4-01 2 130898811 130898811 G T CCDC74B Silent p.P201P 0.46 TCGA-BC-A5W4-01 2 131674571 131674571 G T ARHGEF4 5'UTR 0.20 TCGA-BC-A5W4-01 2 1371215 1371215 G T SNTG2 Missense_Mutation p.S530I 0.21 deleterious(0) possibly_damaging(0.721) TCGA-BC-A5W4-01 2 161055767 161055767 C T ITGB6 Missense_Mutation p.G22S 0.19 tolerated(1) benign(0) TCGA-BC-A5W4-01 2 179494983 179494983 G T TTN Missense_Mutation p.H14756N 0.49 TCGA-BC-A5W4-01 2 224463429 224463429 G T SCG2 Missense_Mutation p.T191N 0.08 deleterious(0) probably_damaging(1) TCGA-BC-A5W4-01 2 232087516 232087516 A G ARMC9 Missense_Mutation p.K194E 0.41 deleterious(0.01) benign(0.423) TCGA-BC-A5W4-01 2 24509193 24509193 T G ITSN2 Missense_Mutation p.K584T 0.10 tolerated(0.29) unknown(0) TCGA-BC-A5W4-01 2 43779386 43779386 G A THADA Nonsense_Mutation p.R923* 0.72 TCGA-BC-A5W4-01 2 86669229 86669229 T - KDM3A Frame_Shift_Del p.L20Rfs*42 0.50 TCGA-BC-A5W4-01 3 196386948 196386948 C T NRROS Missense_Mutation p.T145M 0.18 deleterious(0) probably_damaging(0.965) TCGA-BC-A5W4-01 3 41274853 41274853 T A CTNNB1 Missense_Mutation p.L368H 0.49 tolerated(0.58) benign(0.008) TCGA-BC-A5W4-01 3 43618347 43618347 C T ANO10 Missense_Mutation p.M333I 0.46 deleterious(0.04) possibly_damaging(0.893) TCGA-BC-A5W4-01 3 49200783 49200783 G C CCDC71 Missense_Mutation p.R287G 0.48 deleterious(0) unknown(0) TCGA-BC-A5W4-01 3 52867655 52867655 G T TMEM110-MUSTN1 Silent p.T330T 0.45 TCGA-BC-A5W4-01 3 53911741 53911741 A C ACTR8 Nonsense_Mutation p.L148* 0.42 TCGA-BC-A5W4-01 3 58107094 58107094 C G FLNB Missense_Mutation p.T997R 0.51 tolerated(0.54) benign(0.139) TCGA-BC-A5W4-01 3 73433851 73433851 G A PDZRN3 Silent p.N622N 0.45 TCGA-BC-A5W4-01 3 97194245 97194245 C T EPHA6 Silent p.A648A 0.17 TCGA-BC-A5W4-01 4 10077080 10077080 G A WDR1 Silent p.S581S 0.34 TCGA-BC-A5W4-01 4 57389953 57389953 A G ARL9 Missense_Mutation p.T95A 0.89 tolerated(0.08) probably_damaging(0.999) TCGA-BC-A5W4-01 4 7056905 7056905 A G TADA2B 3'UTR 0.40 TCGA-BC-A5W4-01 5 150948080 150948080 A C FAT2 Missense_Mutation p.I138S 0.46 possibly_damaging(0.881) TCGA-BC-A5W4-01 5 180048543 180048543 C T FLT4 Silent p.Q673Q 0.30 TCGA-BC-A5W4-01 5 180276821 180276821 T C ZFP62 Silent p.E558E 0.29 TCGA-BC-A5W4-01 5 82835447 82835447 A C VCAN Missense_Mutation p.T2209P 0.54 tolerated(0.06) benign(0.099) TCGA-BC-A5W4-01 6 111982951 111982951 T G FYN Missense_Mutation p.E535D 0.96 tolerated(0.78) benign(0) TCGA-BC-A5W4-01 6 117002483 117002483 G C KPNA5 5'UTR 0.74 TCGA-BC-A5W4-01 6 128134854 128134854 T C THEMIS Missense_Mutation p.K311R 0.79 tolerated(0.1) possibly_damaging(0.487) TCGA-BC-A5W4-01 6 13979931 13979931 A T RNF182 3'UTR 0.35 TCGA-BC-A5W4-01 6 21597981 21597981 A G SOX4 3'UTR 0.90 TCGA-BC-A5W4-01 6 44219604 44219604 C - HSP90AB1 Frame_Shift_Del p.I483Sfs*31 0.41 TCGA-BC-A5W4-01 7 134346580 134346580 T C BPGM Silent p.H107H 0.41 TCGA-BC-A5W4-01 7 17890006 17890006 T C SNX13 Silent p.V343V 0.45 TCGA-BC-A5W4-01 7 18869095 18869095 T A HDAC9 Missense_Mutation p.F797Y 0.26 tolerated(0.63) benign(0.012) TCGA-BC-A5W4-01 7 26765154 26765154 T C SKAP2 Missense_Mutation p.Y230C 0.54 deleterious(0.01) benign(0.264) TCGA-BC-A5W4-01 7 35131548 35131548 G T DPY19L2P1 RNA 0.45 TCGA-BC-A5W4-01 7 42004352 42004352 G T GLI3 Missense_Mutation p.S1440Y 0.44 tolerated(0.19) probably_damaging(0.998) TCGA-BC-A5W4-01 7 82585867 82585867 T C PCLO Missense_Mutation p.I1468V 0.44 unknown(0) TCGA-BC-A5W4-01 8 27255270 27255270 A T PTK2B Nonsense_Mutation p.K57* 0.42 TCGA-BC-A5W4-01 9 107521688 107521688 T G NIPSNAP3A 3'UTR 0.22 TCGA-BC-A5W4-01 9 113173839 113173839 T C SVEP1 Missense_Mutation p.Y2051C 0.67 probably_damaging(1) TCGA-BC-A5W4-01 9 130493535 130493535 G C TTC16 Missense_Mutation p.G825R 0.27 tolerated(0.25) benign(0.11) TCGA-BC-A5W4-01 9 131483968 131483968 C T ZDHHC12 Silent p.L148L 0.11 TCGA-BC-A5W4-01 9 27157964 27157964 C A TEK Missense_Mutation p.A63D 0.33 tolerated(0.24) benign(0.142) TCGA-BC-A5W4-01 9 34837695 34837695 C T FAM205B Intron 0.55 TCGA-BC-A5W4-01 9 84208091 84208091 T C TLE1 Missense_Mutation p.Q477R 0.33 tolerated(0.05) possibly_damaging(0.855) TCGA-BC-A5W4-01 9 84208095 84208095 G T TLE1 Missense_Mutation p.R476S 0.36 deleterious(0) possibly_damaging(0.732) TCGA-BC-A5W4-01 X 71401594 71401594 C A PIN4 Silent p.R12R 0.96 TCGA-BC-A69H-01 10 135113524 135113524 C T TUBGCP2 Missense_Mutation p.V82M 0.45 tolerated(0.07) possibly_damaging(0.882) TCGA-BC-A69H-01 10 25464385 25464385 C A GPR158 Silent p.L12L 0.34 TCGA-BC-A69H-01 10 43600449 43600449 G A RET Silent p.T225T 0.32 TCGA-BC-A69H-01 10 45799736 45799736 T C OR13A1 Silent p.L45L 0.25 TCGA-BC-A69H-01 10 48389747 48389747 C T RBP3 Silent p.Q377Q 0.39 TCGA-BC-A69H-01 10 50022037 50022037 G A WDFY4 Silent p.Q1750Q 0.29 TCGA-BC-A69H-01 10 63957724 63957724 C A RTKN2 Missense_Mutation p.R591S 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-BC-A69H-01 10 73498388 73498388 C T CDH23 Missense_Mutation p.A1453V 0.34 tolerated(0.08) benign(0.248) TCGA-BC-A69H-01 10 76789864 76789864 G A KAT6B Missense_Mutation p.S1761N 0.40 probably_damaging(0.985) TCGA-BC-A69H-01 10 97101323 97101323 C T SORBS1 Missense_Mutation p.E848K 0.42 deleterious(0) probably_damaging(0.987) TCGA-BC-A69H-01 11 119052990 119052990 G A NLRX1 Missense_Mutation p.G848S 0.29 tolerated(0.14) benign(0.23) TCGA-BC-A69H-01 11 1778644 1778644 C T CTSD Missense_Mutation p.R205H 0.51 tolerated(0.07) benign(0.006) TCGA-BC-A69H-01 11 30032181 30032181 T C KCNA4 3'UTR 0.27 TCGA-BC-A69H-01 11 31815289 31815289 C A PAX6 Missense_Mutation p.R290I 0.37 deleterious(0) probably_damaging(0.984) TCGA-BC-A69H-01 11 5776243 5776243 C G OR52N4 Silent p.L91L 0.15 TCGA-BC-A69H-01 11 62445985 62445985 C A UBXN1 Nonsense_Mutation p.E68* 0.21 TCGA-BC-A69H-01 11 63964989 63964989 A G STIP1 Missense_Mutation p.Y275C 0.19 deleterious(0) probably_damaging(0.992) TCGA-BC-A69H-01 11 64434901 64434901 C A NRXN2 Missense_Mutation p.G540V 0.20 tolerated_low_confidence(0.31) possibly_damaging(0.877) TCGA-BC-A69H-01 12 120882649 120882649 G A TRIAP1 3'UTR 0.19 TCGA-BC-A69H-01 12 2787041 2787041 G A CACNA1C Intron 0.37 TCGA-BC-A69H-01 12 5154790 5154790 G A KCNA5 Missense_Mutation p.G493S 0.39 deleterious(0) probably_damaging(1) TCGA-BC-A69H-01 12 52865932 52865932 G T KRT6C Missense_Mutation p.L225M 0.42 deleterious(0.01) probably_damaging(0.988) TCGA-BC-A69H-01 12 70747886 70747886 A G CNOT2 3'UTR 0.46 TCGA-BC-A69H-01 12 93205205 93205205 T C EEA1 Silent p.L683L 0.24 TCGA-BC-A69H-01 12 9997089 9997089 C A KLRF1 Silent p.T221T 0.43 TCGA-BC-A69H-01 14 20874511 20874511 G A TEP1 Missense_Mutation p.P206S 0.23 deleterious(0) probably_damaging(1) TCGA-BC-A69H-01 14 50911780 50911780 C A MAP4K5 Missense_Mutation p.V440L 0.21 tolerated(0.42) benign(0.012) TCGA-BC-A69H-01 14 64518505 64518505 A T SYNE2 Missense_Mutation p.Y2625F 0.39 benign(0.111) TCGA-BC-A69H-01 14 65569118 65569119 - G MAX 5'UTR 0.20 TCGA-BC-A69H-01 14 75747795 75747795 G A FOS Missense_Mutation p.D271N 0.46 tolerated(0.27) benign(0.25) TCGA-BC-A69H-01 14 94772500 94772500 C A SERPINA6 Missense_Mutation p.D314Y 0.40 deleterious(0.02) possibly_damaging(0.541) TCGA-BC-A69H-01 15 34642906 34642906 C A NUTM1 Missense_Mutation p.P243T 0.36 deleterious(0) probably_damaging(1) TCGA-BC-A69H-01 15 34642907 34642907 C A NUTM1 Missense_Mutation p.P243Q 0.36 deleterious(0) probably_damaging(1) TCGA-BC-A69H-01 16 22167465 22167465 G T VWA3A 3'UTR 0.70 TCGA-BC-A69H-01 16 2854526 2854526 T C PRSS41 RNA 0.18 TCGA-BC-A69H-01 16 30370140 30370140 T A TBC1D10B Splice_Site p.X548_splice 0.27 TCGA-BC-A69H-01 16 50815217 50815217 G A CYLD Missense_Mutation p.A527T 0.29 deleterious(0.01) probably_damaging(0.953) TCGA-BC-A69H-01 16 70366883 70366883 A C DDX19B Missense_Mutation p.E400A 0.16 tolerated(0.3) benign(0.168) TCGA-BC-A69H-01 16 84214736 84214736 C A TAF1C Missense_Mutation p.Q433H 0.51 deleterious(0) probably_damaging(0.967) TCGA-BC-A69H-01 17 1576479 1576479 G A PRPF8 Missense_Mutation p.R1224C 0.70 tolerated(0.06) possibly_damaging(0.901) TCGA-BC-A69H-01 17 20107972 20107972 G T SPECC1 Missense_Mutation p.G204W 0.72 deleterious(0.05) possibly_damaging(0.901) TCGA-BC-A69H-01 17 20224663 20224663 G A AC004702.2 Intron 0.31 TCGA-BC-A69H-01 17 33288458 33288458 T C CCT6B 5'UTR 0.29 TCGA-BC-A69H-01 17 38451607 38451607 G A CDC6 Splice_Site p.X362_splice 0.55 TCGA-BC-A69H-01 17 39254310 39254310 C T KRTAP4-8 Silent p.V9V 0.14 TCGA-BC-A69H-01 17 39671127 39671127 T C KRT15 Intron 0.38 TCGA-BC-A69H-01 17 47014463 47014463 T A SNF8 Missense_Mutation p.M90L 0.26 tolerated(0.77) benign(0.001) TCGA-BC-A69H-01 17 7579389 7579399 GGGAAGGGACA - TP53 Frame_Shift_Del p.V97Efs*48 0.41 TCGA-BC-A69H-01 17 79660939 79660939 C - HGS Frame_Shift_Del p.M295Cfs*18 0.22 TCGA-BC-A69H-01 17 80051623 80051623 C T FASN Missense_Mutation p.G102E 0.59 deleterious(0) probably_damaging(0.996) TCGA-BC-A69H-01 18 6958596 6958596 C T LAMA1 Missense_Mutation p.S2615N 0.19 tolerated(0.21) benign(0.033) TCGA-BC-A69H-01 18 7002349 7002349 A G LAMA1 Silent p.D1432D 0.21 TCGA-BC-A69H-01 19 10531608 10531608 G T PDE4A Missense_Mutation p.E56D 0.52 tolerated_low_confidence(0.09) benign(0.007) TCGA-BC-A69H-01 19 17040002 17040002 T A CPAMD8 Missense_Mutation p.Q1012L 0.18 deleterious(0.02) benign(0.438) TCGA-BC-A69H-01 19 17283665 17283665 A G MYO9B Missense_Mutation p.D678G 0.47 deleterious(0) possibly_damaging(0.633) TCGA-BC-A69H-01 19 18004537 18004537 C T SLC5A5 Missense_Mutation p.P595S 0.37 tolerated(0.14) benign(0.011) TCGA-BC-A69H-01 19 19655201 19655201 C A CILP2 Missense_Mutation p.T616N 0.38 deleterious(0.01) benign(0.157) TCGA-BC-A69H-01 19 21132332 21132332 G T ZNF85 Nonsense_Mutation p.G338* 0.24 TCGA-BC-A69H-01 19 21132585 21132585 G A ZNF85 Missense_Mutation p.G422E 0.28 tolerated(0.06) possibly_damaging(0.589) TCGA-BC-A69H-01 19 33077605 33077605 A G PDCD5 Intron 0.44 TCGA-BC-A69H-01 19 36120133 36120133 G T RBM42 Silent p.P26P 0.36 TCGA-BC-A69H-01 19 36207170 36207170 A T ZBTB32 Missense_Mutation p.Q387L 0.34 deleterious(0.02) benign(0.227) TCGA-BC-A69H-01 19 38818068 38818068 G A KCNK6 3'UTR 0.54 TCGA-BC-A69H-01 19 41785002 41785002 G A HNRNPUL1 Silent p.V269V 0.36 TCGA-BC-A69H-01 19 50102767 50102767 C T PRR12 Missense_Mutation p.P1306L 0.07 possibly_damaging(0.859) TCGA-BC-A69H-01 19 50180570 50180570 G A PRMT1 Missense_Mutation p.M11I 0.21 tolerated_low_confidence(0.08) benign(0.093) TCGA-BC-A69H-01 19 50361895 50361895 C A PTOV1 Silent p.I342I 0.49 TCGA-BC-A69H-01 19 51506316 51506316 G A KLK9 3'UTR 0.42 TCGA-BC-A69H-01 19 53854400 53854400 G T ZNF845 Missense_Mutation p.G158W 0.37 deleterious(0.04) probably_damaging(0.967) TCGA-BC-A69H-01 19 54378038 54378038 T C MYADM 3'UTR 0.16 TCGA-BC-A69H-01 19 6374593 6374593 A C ALKBH7 Missense_Mutation p.I166L 0.57 deleterious(0.01) possibly_damaging(0.869) TCGA-BC-A69H-01 19 7535139 7535139 C G ARHGEF18 Silent p.L1159L 0.55 TCGA-BC-A69H-01 19 9296842 9296842 C A OR7D2 Missense_Mutation p.P129T 0.17 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-BC-A69H-01 1 112026306 112026306 C A ADORA3 3'UTR 0.09 TCGA-BC-A69H-01 1 154931237 154931237 T C PYGO2 3'UTR 0.15 TCGA-BC-A69H-01 1 160106381 160106381 G T ATP1A2 Missense_Mutation p.G862V 0.37 deleterious(0) probably_damaging(0.982) TCGA-BC-A69H-01 1 160178336 160178336 A G PEA15 Intron 0.67 TCGA-BC-A69H-01 1 165398166 165398166 T A RXRG Silent p.P29P 0.42 TCGA-BC-A69H-01 1 167384897 167384897 T C POU2F1 Silent p.S717S 0.26 TCGA-BC-A69H-01 1 17331296 17331296 G A ATP13A2 Missense_Mutation p.S123F 0.11 deleterious(0.04) benign(0.003) TCGA-BC-A69H-01 1 190423871 190423871 A T BRINP3 Missense_Mutation p.D50E 0.19 tolerated(0.11) benign(0.023) TCGA-BC-A69H-01 1 198721765 198721765 T A PTPRC Missense_Mutation p.W1125R 0.23 deleterious(0) probably_damaging(1) TCGA-BC-A69H-01 1 201294914 201294914 T C PKP1 Missense_Mutation p.L706P 0.21 deleterious(0) probably_damaging(0.987) TCGA-BC-A69H-01 1 215802343 215802343 G A USH2A Missense_Mutation p.T5111I 0.12 possibly_damaging(0.536) TCGA-BC-A69H-01 1 228451857 228451857 G T OBSCN Missense_Mutation p.R1726S 0.36 benign(0.018) TCGA-BC-A69H-01 1 229770867 229770867 G T URB2 Missense_Mutation p.L169F 0.33 deleterious(0) probably_damaging(0.997) TCGA-BC-A69H-01 1 248487600 248487600 A G OR2M7 Missense_Mutation p.S91P 0.46 deleterious(0.02) benign(0.299) TCGA-BC-A69H-01 1 46509300 46509300 T C PIK3R3 3'UTR 0.62 TCGA-BC-A69H-01 1 6526226 6526226 C T TNFRSF25 5'UTR 0.25 TCGA-BC-A69H-01 1 84647892 84647892 G A PRKACB Missense_Mutation p.G87R 0.20 tolerated(0.13) benign(0.003) TCGA-BC-A69H-01 20 24565510 24565510 A G SYNDIG1 Missense_Mutation p.T167A 0.46 deleterious(0.01) possibly_damaging(0.78) TCGA-BC-A69H-01 20 2988018 2988018 G A PTPRA Silent p.P286P 0.14 TCGA-BC-A69H-01 20 3185281 3185281 G C DDRGK1 5'UTR 0.25 TCGA-BC-A69H-01 21 42080424 42080424 T A DSCAM Missense_Mutation p.N106I 0.31 deleterious(0.03) probably_damaging(0.996) TCGA-BC-A69H-01 21 44841639 44841639 C T SIK1 Silent p.A126A 0.30 TCGA-BC-A69H-01 2 128628831 128628831 C T AMMECR1L Silent p.T170T 0.22 TCGA-BC-A69H-01 2 132110882 132110882 C T AC073869.2 5'Flank 0.40 TCGA-BC-A69H-01 2 152476269 152476269 T C NEB Missense_Mutation p.Y3523C 0.38 probably_damaging(1) TCGA-BC-A69H-01 2 170062623 170062623 A T LRP2 Missense_Mutation p.M2489K 0.38 benign(0) TCGA-BC-A69H-01 2 190044308 190044308 G T COL5A2 Missense_Mutation p.A8E 0.07 benign(0.283) TCGA-BC-A69H-01 2 207437884 207437884 G C ADAM23 Missense_Mutation p.D568H 0.13 deleterious(0.01) probably_damaging(1) TCGA-BC-A69H-01 2 220349004 220349004 G A SPEG Silent p.K2273K 0.33 TCGA-BC-A69H-01 2 25057765 25057765 C T ADCY3 Missense_Mutation p.R568H 0.18 tolerated(0.09) benign(0.001) TCGA-BC-A69H-01 2 27346783 27346783 C T ABHD1 5'UTR 0.47 TCGA-BC-A69H-01 2 69379336 69379336 C T ANTXR1 Silent p.I329I 0.55 TCGA-BC-A69H-01 2 79384339 79384339 C T REG3A 3'UTR 0.44 TCGA-BC-A69H-01 2 97505176 97505176 G T ANKRD23 3'UTR 0.44 TCGA-BC-A69H-01 3 10417206 10417206 T C ATP2B2 Missense_Mutation p.K442E 0.11 deleterious(0.05) probably_damaging(0.998) TCGA-BC-A69H-01 3 122081820 122081820 A T CCDC58 Missense_Mutation p.W127R 0.06 tolerated(0.16) benign(0.062) TCGA-BC-A69H-01 3 125844550 125844550 A G ALDH1L1 Missense_Mutation p.I580T 0.14 deleterious(0) benign(0.068) TCGA-BC-A69H-01 3 152553754 152553754 A G P2RY1 Silent p.V61V 0.10 TCGA-BC-A69H-01 3 183963596 183963596 T C ALG3 Silent p.T67T 0.42 TCGA-BC-A69H-01 3 3137002 3137002 G T IL5RA Missense_Mutation p.T279K 0.44 deleterious(0.04) benign(0.082) TCGA-BC-A69H-01 3 41274909 41274909 A T CTNNB1 Missense_Mutation p.N387Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-BC-A69H-01 3 41954356 41954356 C G ULK4 Missense_Mutation p.W280S 0.33 deleterious(0) probably_damaging(0.999) TCGA-BC-A69H-01 3 44903449 44903449 C T TMEM42 Silent p.A11A 0.41 TCGA-BC-A69H-01 3 58395296 58395296 A G PXK Missense_Mutation p.H449R 0.46 tolerated(0.3) benign(0.345) TCGA-BC-A69H-01 3 9953248 9953248 C T IL17RE Silent p.D398D 0.15 TCGA-BC-A69H-01 4 153896514 153896514 G T FHDC1 Nonsense_Mutation p.E691* 0.41 TCGA-BC-A69H-01 4 1807577 1807577 C T FGFR3 Silent p.C584C 0.29 TCGA-BC-A69H-01 4 2829348 2829348 A G SH3BP2 Missense_Mutation p.D235G 0.44 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-BC-A69H-01 4 42895456 42895456 C A GRXCR1 Missense_Mutation p.S58Y 0.64 tolerated(1) benign(0.019) TCGA-BC-A69H-01 4 47900847 47900847 C G NFXL1 Missense_Mutation p.S339T 0.50 deleterious(0) probably_damaging(0.987) TCGA-BC-A69H-01 4 77025763 77025763 A G ART3 Silent p.P328P 0.74 TCGA-BC-A69H-01 5 137451200 137451200 C T NME5 3'UTR 0.80 TCGA-BC-A69H-01 5 140557467 140557467 G C PCDHB8 5'UTR 0.05 TCGA-BC-A69H-01 5 156712348 156712348 G T CYFIP2 Splice_Site 0.15 TCGA-BC-A69H-01 5 159686508 159686508 T G CCNJL Missense_Mutation p.Y232S 0.23 deleterious(0) probably_damaging(0.978) TCGA-BC-A69H-01 5 55407540 55407540 C G ANKRD55 Silent p.V345V 0.51 TCGA-BC-A69H-01 5 67569772 67569772 G C PIK3R1 Missense_Mutation p.E145Q 0.11 deleterious(0.01) benign(0.267) TCGA-BC-A69H-01 5 89925241 89925241 T A GPR98 Nonsense_Mutation p.L575* 0.49 TCGA-BC-A69H-01 6 53373505 53373505 G C GCLC Missense_Mutation p.A278G 0.15 deleterious(0) probably_damaging(1) TCGA-BC-A69H-01 6 65612320 65612320 A G EYS Silent p.C905C 0.21 TCGA-BC-A69H-01 6 69349266 69349266 G T BAI3 Missense_Mutation p.E233D 0.67 tolerated(0.66) benign(0.027) TCGA-BC-A69H-01 6 90529349 90529349 C G MDN1 5'UTR 0.77 TCGA-BC-A69H-01 6 90529350 90529350 G A MDN1 5'UTR 0.77 TCGA-BC-A69H-01 7 106508945 106508945 G T PIK3CG Silent p.P313P 0.57 TCGA-BC-A69H-01 7 12409323 12409323 C A VWDE Missense_Mutation p.G870V 0.32 tolerated(0.58) benign(0.045) TCGA-BC-A69H-01 7 134894445 134894445 C T WDR91 Silent p.R62R 0.43 TCGA-BC-A69H-01 7 140218297 140218297 C A DENND2A 3'UTR 0.37 TCGA-BC-A69H-01 7 141755415 141755415 C T MGAM Silent p.T1124T 0.18 TCGA-BC-A69H-01 7 2625881 2625881 G A IQCE Silent p.K288K 0.20 TCGA-BC-A69H-01 7 29690891 29690891 A G ZNRF2P2 RNA 0.50 TCGA-BC-A69H-01 7 44151907 44151907 C T AEBP1 Missense_Mutation p.S735L 0.38 tolerated(0.15) possibly_damaging(0.541) TCGA-BC-A69H-01 7 45786858 45786858 C G SEPT7P2 RNA 0.14 TCGA-BC-A69H-01 8 17163407 17163407 T G MTMR7 Missense_Mutation p.E404A 0.40 deleterious(0) probably_damaging(0.999) TCGA-BC-A69H-01 8 3165845 3165845 G T CSMD1 Missense_Mutation p.P1271H 0.16 probably_damaging(0.979) TCGA-BC-A69H-01 8 77775784 77775784 C T ZFHX4 Silent p.L3278L 0.33 TCGA-BC-A69H-01 9 104499796 104499796 C G GRIN3A Missense_Mutation p.A156P 0.34 deleterious(0.05) possibly_damaging(0.776) TCGA-BC-A69H-01 9 108536210 108536210 G A TMEM38B Nonsense_Mutation p.W242* 0.36 TCGA-BC-A69H-01 9 113312149 113312149 G C SVEP1 Missense_Mutation p.A256G 0.18 probably_damaging(0.999) TCGA-BC-A69H-01 9 134136583 134136583 C T FAM78A Missense_Mutation p.D160N 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-BC-A69H-01 9 140173601 140173601 G A TOR4A Missense_Mutation p.E154K 0.30 deleterious(0) probably_damaging(0.928) TCGA-BC-A69H-01 9 26905887 26905887 C G PLAA Missense_Mutation p.Q670H 0.22 tolerated(0.12) benign(0.006) TCGA-BC-A69H-01 9 27212818 27212818 T C TEK Missense_Mutation p.S934P 0.20 deleterious(0) probably_damaging(0.997) TCGA-BC-A69H-01 9 3247979 3247979 T A RFX3 Intron 0.35 TCGA-BC-A69H-01 9 35753017 35753017 G T MSMP 3'UTR 0.06 TCGA-BC-A69H-01 X 102978843 102978843 A C GLRA4 Missense_Mutation p.L173R 0.69 deleterious(0.03) benign(0.001) TCGA-BC-A69H-01 X 103080318 103080318 C T RAB9B Missense_Mutation p.V133M 0.68 deleterious(0) probably_damaging(0.976) TCGA-BC-A69H-01 X 155233210 155233210 G T IL9R Missense_Mutation p.W80L 0.49 deleterious(0.01) benign(0.071) TCGA-BC-A69H-01 X 48375573 48375573 C T PORCN Silent p.G392G 0.80 TCGA-BC-A69H-01 X 50350826 50350826 G T SHROOM4 Missense_Mutation p.P1106T 0.57 deleterious(0.01) probably_damaging(0.998) TCGA-BC-A69H-01 X 88009778 88009778 A T CPXCR1 3'UTR 0.71 TCGA-BC-A69H-01 X 90690699 90690699 T A PABPC5 Silent p.A41A 0.60 TCGA-BC-A8YO-01 10 128192733 128192733 C T C10orf90 Missense_Mutation p.E346K 0.72 tolerated(0.26) benign(0.081) TCGA-BC-A8YO-01 10 13629119 13629119 G T PRPF18 Missense_Mutation p.K11N 0.44 deleterious(0) possibly_damaging(0.853) TCGA-BC-A8YO-01 10 50723368 50723368 G A ERCC6-PGBD3 3'UTR 0.05 TCGA-BC-A8YO-01 10 55849778 55849778 C A PCDH15 Nonsense_Mutation p.G655* 0.41 TCGA-BC-A8YO-01 11 101833550 101833550 T - KIAA1377 Frame_Shift_Del p.I595Kfs*21 0.27 TCGA-BC-A8YO-01 11 101849150 101849150 A G KIAA1377 Missense_Mutation p.N973S 0.05 tolerated(0.5) possibly_damaging(0.487) TCGA-BC-A8YO-01 11 121037416 121037416 C A TECTA Missense_Mutation p.T1838N 0.10 tolerated(0.49) benign(0.032) TCGA-BC-A8YO-01 11 124618542 124618542 G C VSIG2 Missense_Mutation p.T235S 0.45 tolerated(0.64) benign(0.238) TCGA-BC-A8YO-01 11 20660007 20660007 T C SLC6A5 Silent p.G624G 0.38 TCGA-BC-A8YO-01 11 60274541 60274541 G C MS4A12 Missense_Mutation p.A250P 0.40 tolerated(0.23) benign(0.341) TCGA-BC-A8YO-01 11 70194365 70194365 A C PPFIA1 Missense_Mutation p.S668R 0.41 deleterious(0.01) possibly_damaging(0.481) TCGA-BC-A8YO-01 12 110205993 110205993 C A FAM222A Missense_Mutation p.Q87K 0.29 deleterious(0) probably_damaging(0.915) TCGA-BC-A8YO-01 12 122261155 122261155 A T SETD1B Missense_Mutation p.Q1514L 0.36 unknown(0) TCGA-BC-A8YO-01 12 129558280 129558280 G C TMEM132D 3'UTR 0.26 TCGA-BC-A8YO-01 12 51901265 51901265 A T SLC4A8 3'UTR 0.39 TCGA-BC-A8YO-01 12 8756705 8756705 T C AICDA 3'UTR 0.50 TCGA-BC-A8YO-01 12 88373936 88373936 A G C12orf50 3'UTR 0.56 TCGA-BC-A8YO-01 14 106478139 106478139 C T IGHV4-4 Missense_Mutation p.A107T 0.25 tolerated_low_confidence(0.06) benign(0.105) TCGA-BC-A8YO-01 14 23869918 23869918 G A MYH6 Silent p.D470D 0.43 TCGA-BC-A8YO-01 14 52481919 52481919 G A NID2 Missense_Mutation p.R1035W 0.44 deleterious(0.01) probably_damaging(0.985) TCGA-BC-A8YO-01 15 22472949 22472949 C T IGHV4OR15-8 Missense_Mutation p.A108T 0.24 deleterious(0.05) benign(0.209) TCGA-BC-A8YO-01 15 33990117 33990117 C - RYR3 Frame_Shift_Del p.N2058Tfs*3 0.28 TCGA-BC-A8YO-01 15 45250668 45250668 G T C15orf43 Missense_Mutation p.A82S 0.58 tolerated(0.39) benign(0.092) TCGA-BC-A8YO-01 15 65676694 65676694 G A IGDCC4 Missense_Mutation p.H1136Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-BC-A8YO-01 15 73635902 73635902 C A HCN4 Missense_Mutation p.D345Y 0.35 deleterious(0) possibly_damaging(0.472) TCGA-BC-A8YO-01 15 99482513 99482513 C A IGF1R Missense_Mutation p.N1127K 0.44 deleterious(0.01) probably_damaging(0.997) TCGA-BC-A8YO-01 15 99768916 99768916 A T TTC23 Translation_Start_Site p.M1? 0.39 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BC-A8YO-01 16 15596120 15596143 GAATAACAATCATAGCCAGGATGT - C16orf45 Intron 0.25 TCGA-BC-A8YO-01 17 36830528 36830528 T A C17orf96 Missense_Mutation p.Q74L 0.52 tolerated_low_confidence(0.09) benign(0.002) TCGA-BC-A8YO-01 17 72310262 72310262 G A DNAI2 Silent p.Q575Q 0.40 TCGA-BC-A8YO-01 17 7577589 7577594 GTGGTA - TP53 In_Frame_Del p.T230_T231del 0.57 TCGA-BC-A8YO-01 19 10610154 10610154 C T KEAP1 Missense_Mutation p.G186S 0.74 deleterious(0) probably_damaging(1) TCGA-BC-A8YO-01 19 11339628 11339628 G C DOCK6 Missense_Mutation p.F934L 0.77 tolerated(0.21) possibly_damaging(0.541) TCGA-BC-A8YO-01 19 12977547 12977547 T C MAST1 Missense_Mutation p.F704L 0.76 deleterious(0) probably_damaging(0.986) TCGA-BC-A8YO-01 19 19738150 19738150 C T LPAR2 Intron 0.38 TCGA-BC-A8YO-01 19 41352896 41352896 G C CYP2A6 Missense_Mutation p.Q239E 0.34 benign(0.014) TCGA-BC-A8YO-01 19 43579527 43579527 G C PSG2 Missense_Mutation p.P230A 0.41 deleterious(0.01) possibly_damaging(0.821) TCGA-BC-A8YO-01 19 53454513 53454513 G T ZNF816 Missense_Mutation p.T172N 0.43 deleterious(0.03) benign(0.202) TCGA-BC-A8YO-01 19 54080365 54080365 A T ZNF331 Missense_Mutation p.E184V 0.44 tolerated(0.07) probably_damaging(0.996) TCGA-BC-A8YO-01 19 54802753 54802753 C A LILRA3 Missense_Mutation p.V230L 0.86 deleterious(0) benign(0.098) TCGA-BC-A8YO-01 19 54822850 54822850 G A LILRA5 Silent p.S182S 0.51 TCGA-BC-A8YO-01 19 56196948 56196948 C T EPN1 Missense_Mutation p.R250W 0.39 deleterious(0) unknown(0) TCGA-BC-A8YO-01 19 8326959 8326959 G A CERS4 Missense_Mutation p.G384E 0.49 tolerated(0.64) benign(0.147) TCGA-BC-A8YO-01 1 101007289 101007289 A T GPR88 3'UTR 0.43 TCGA-BC-A8YO-01 1 152282309 152282309 G T FLG Missense_Mutation p.H1685N 0.20 benign(0.322) TCGA-BC-A8YO-01 1 156562201 156562201 G T APOA1BP Silent p.L112L 0.62 TCGA-BC-A8YO-01 1 161989951 161989951 C T OLFML2B Missense_Mutation p.V66I 0.42 deleterious(0.01) probably_damaging(0.955) TCGA-BC-A8YO-01 1 16378853 16378853 C T CLCNKB Silent p.T523T 0.40 TCGA-BC-A8YO-01 1 1721974 1721974 C A GNB1 Missense_Mutation p.V187F 0.34 deleterious(0) probably_damaging(0.989) TCGA-BC-A8YO-01 1 28293332 28293332 A G XKR8 Missense_Mutation p.Y270C 0.46 deleterious(0.01) probably_damaging(0.92) TCGA-BC-A8YO-01 1 45474271 45474271 C - HECTD3 Frame_Shift_Del p.R392Hfs*5 0.23 TCGA-BC-A8YO-01 1 65147714 65147714 G C CACHD1 Missense_Mutation p.V1120L 0.42 tolerated(0.09) benign(0.094) TCGA-BC-A8YO-01 22 35802596 35802596 C T MCM5 Silent p.A158A 0.45 TCGA-BC-A8YO-01 22 39131939 39131939 G A SUN2 3'UTR 0.44 TCGA-BC-A8YO-01 22 41252621 41252621 C A ST13 5'UTR 0.49 TCGA-BC-A8YO-01 22 41626420 41626420 G A L3MBTL2 3'UTR 0.70 TCGA-BC-A8YO-01 2 11052594 11052594 C T KCNF1 Silent p.S14S 0.49 TCGA-BC-A8YO-01 2 207572184 207572184 A G DYTN Silent p.R46R 0.42 TCGA-BC-A8YO-01 2 216299523 216299523 T C FN1 Missense_Mutation p.H58R 0.42 tolerated(0.32) possibly_damaging(0.864) TCGA-BC-A8YO-01 2 24342547 24342547 G A PFN4 Silent p.N87N 0.41 TCGA-BC-A8YO-01 2 27356194 27356194 G A PREB Nonsense_Mutation p.Q113* 0.38 TCGA-BC-A8YO-01 2 43956801 43956801 T C PLEKHH2 Missense_Mutation p.V916A 0.39 deleterious(0.02) benign(0.292) TCGA-BC-A8YO-01 2 68694809 68694809 G C APLF 5'UTR 0.44 TCGA-BC-A8YO-01 2 80846338 80846338 C T CTNNA2 Intron 0.41 TCGA-BC-A8YO-01 2 9613123 9613123 G A CPSF3 Missense_Mutation p.E678K 0.40 tolerated(0.85) benign(0.017) TCGA-BC-A8YO-01 3 127540605 127540605 G T MGLL Silent p.L29L 0.40 TCGA-BC-A8YO-01 3 140660913 140660913 C T SLC25A36 Missense_Mutation p.T6M 0.50 deleterious(0.01) benign(0.082) TCGA-BC-A8YO-01 3 180630481 180630481 A T FXR1 Missense_Mutation p.E3V 0.37 deleterious(0) benign(0.224) TCGA-BC-A8YO-01 3 186038405 186038405 C T DGKG 5'UTR 0.52 TCGA-BC-A8YO-01 3 51970364 51970364 G C RRP9 Missense_Mutation p.A215G 0.42 deleterious(0) probably_damaging(0.996) TCGA-BC-A8YO-01 4 103730836 103730837 - T UBE2D3 Frame_Shift_Ins p.M40Nfs*4 0.27 TCGA-BC-A8YO-01 4 119951193 119951193 G - SYNPO2 Frame_Shift_Del p.D422Tfs*14 0.31 TCGA-BC-A8YO-01 4 175636670 175636670 A G GLRA3 Silent p.D181D 0.42 TCGA-BC-A8YO-01 4 20535222 20535222 T C SLIT2 Silent p.D572D 0.43 TCGA-BC-A8YO-01 4 5624510 5624510 C T EVC2 Missense_Mutation p.R752Q 0.42 tolerated(0.05) probably_damaging(0.93) TCGA-BC-A8YO-01 4 74284021 74284024 AAAC - ALB Frame_Shift_Del p.Q550Lfs*7 0.46 TCGA-BC-A8YO-01 4 85758098 85758098 T A WDFY3 Missense_Mutation p.Q187L 0.37 deleterious(0) possibly_damaging(0.756) TCGA-BC-A8YO-01 5 110445911 110445911 A - WDR36 Frame_Shift_Del p.N507Tfs*4 0.29 TCGA-BC-A8YO-01 5 1219158 1219158 C T SLC6A19 Silent p.G438G 0.28 TCGA-BC-A8YO-01 5 140482819 140482819 G C PCDHB3 3'UTR 0.38 TCGA-BC-A8YO-01 5 150071321 150071321 T G RBM22 Missense_Mutation p.S419R 0.34 tolerated_low_confidence(0.27) benign(0.052) TCGA-BC-A8YO-01 5 161112894 161112894 T C GABRA6 5'UTR 0.53 TCGA-BC-A8YO-01 5 173036375 173036375 T C BOD1 Missense_Mutation p.N142S 0.40 tolerated(0.13) possibly_damaging(0.9) TCGA-BC-A8YO-01 5 37170312 37170312 G C C5orf42 Nonsense_Mutation p.S2098* 0.43 TCGA-BC-A8YO-01 6 100061789 100061789 G T PRDM13 Silent p.A426A 0.31 TCGA-BC-A8YO-01 6 108502144 108502144 C A NR2E1 Silent p.I291I 0.45 TCGA-BC-A8YO-01 6 116442516 116442516 G T COL10A1 Missense_Mutation p.P255T 0.48 tolerated(0.09) unknown(0) TCGA-BC-A8YO-01 6 163735872 163735872 C T PACRG Silent p.D248D 0.47 TCGA-BC-A8YO-01 6 26104293 26104293 C G HIST1H4C Missense_Mutation p.R40G 0.05 deleterious(0) probably_damaging(0.996) TCGA-BC-A8YO-01 6 28134403 28134403 A G ZNF192P1 RNA 0.41 TCGA-BC-A8YO-01 6 38256068 38256068 C T BTBD9 Silent p.P478P 0.42 TCGA-BC-A8YO-01 6 96653094 96653094 G T FUT9 3'UTR 0.37 TCGA-BC-A8YO-01 7 74114719 74114719 G T GTF2I Missense_Mutation p.W172C 0.46 deleterious(0.01) probably_damaging(0.986) TCGA-BC-A8YO-01 7 7421217 7421217 T A COL28A1 Silent p.P721P 0.37 TCGA-BC-A8YO-01 8 139263216 139263216 G T FAM135B Missense_Mutation p.T137K 0.42 deleterious(0) benign(0.137) TCGA-BC-A8YO-01 8 15480625 15480625 T C TUSC3 Missense_Mutation p.W59R 0.73 deleterious(0) benign(0.248) TCGA-BC-A8YO-01 8 87570790 87570790 G A CPNE3 3'UTR 0.28 TCGA-BC-A8YO-01 9 110091936 110091936 G T RAD23B Nonstop_Mutation p.*410Lext*62 0.43 TCGA-BC-A8YO-01 9 129596472 129596472 G T ZBTB43 3'UTR 0.20 TCGA-BC-A8YO-01 9 131909801 131909801 C G PPP2R4 3'UTR 0.66 TCGA-BC-A8YO-01 9 86616608 86616608 T G RMI1 Missense_Mutation p.L236R 0.47 deleterious(0) benign(0.142) TCGA-BC-A8YO-01 X 37699825 37699825 C T DYNLT3 3'UTR 0.73 TCGA-BC-A8YO-01 X 43698229 43698229 T A MAOB Missense_Mutation p.D55V 0.74 deleterious(0) probably_damaging(1) TCGA-BD-A2L6-01 10 88259978 88259978 C T WAPAL Missense_Mutation p.G341D 0.66 tolerated_low_confidence(0.17) benign(0.016) TCGA-BD-A2L6-01 10 89720811 89720812 - A PTEN Frame_Shift_Ins p.N323Kfs*2 0.41 TCGA-BD-A2L6-01 10 95441348 95441348 C A FRA10AC1 Nonsense_Mutation p.E226* 0.15 TCGA-BD-A2L6-01 11 102562464 102562464 A G MMP27 3'UTR 0.11 TCGA-BD-A2L6-01 11 130343256 130343256 T G ADAMTS15 Missense_Mutation p.F798C 0.51 deleterious(0) probably_damaging(0.995) TCGA-BD-A2L6-01 11 134123493 134123493 C T ACAD8 5'UTR 0.36 TCGA-BD-A2L6-01 11 17418492 17418492 C A ABCC8 Missense_Mutation p.V1364F 0.40 deleterious(0) possibly_damaging(0.898) TCGA-BD-A2L6-01 11 47712149 47712149 C T AGBL2 Silent p.G370G 0.45 TCGA-BD-A2L6-01 11 556881 556881 G - C11orf35 Frame_Shift_Del p.E311Sfs*52 0.36 TCGA-BD-A2L6-01 11 6422250 6422250 G C APBB1 Nonsense_Mutation p.Y545* 0.39 TCGA-BD-A2L6-01 12 124915190 124915190 C A NCOR2 Missense_Mutation p.K342N 0.50 unknown(0) TCGA-BD-A2L6-01 12 14650961 14650961 G T ATF7IP Missense_Mutation p.C1256F 0.69 deleterious_low_confidence(0) unknown(0) TCGA-BD-A2L6-01 12 2558277 2558277 G T CACNA1C Missense_Mutation p.V205L 0.63 tolerated(0.21) benign(0.013) TCGA-BD-A2L6-01 12 50190101 50190101 C G NCKAP5L Missense_Mutation p.E514D 0.43 tolerated(0.16) benign(0.014) TCGA-BD-A2L6-01 12 50291319 50291319 C T FAIM2 Silent p.V121V 0.36 TCGA-BD-A2L6-01 13 100515304 100515304 A C CLYBL Missense_Mutation p.L166F 0.32 tolerated(0.11) possibly_damaging(0.651) TCGA-BD-A2L6-01 13 49281716 49281716 A G CYSLTR2 Missense_Mutation p.I255V 0.28 tolerated(0.36) benign(0.438) TCGA-BD-A2L6-01 14 24563627 24563627 T C PCK2 Missense_Mutation p.Y5H 0.17 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-BD-A2L6-01 14 61909960 61909960 C G PRKCH Missense_Mutation p.H187D 0.52 tolerated(0.07) probably_damaging(0.999) TCGA-BD-A2L6-01 15 34109151 34109151 G T RYR3 Missense_Mutation p.D3531Y 0.32 possibly_damaging(0.602) TCGA-BD-A2L6-01 15 34640560 34640560 C T NUTM1 Missense_Mutation p.A136V 0.34 deleterious(0.01) possibly_damaging(0.904) TCGA-BD-A2L6-01 15 45440496 45440496 G C DUOX1 Missense_Mutation p.C890S 0.45 tolerated(0.42) benign(0.002) TCGA-BD-A2L6-01 15 81234212 81234212 G T KIAA1199 Missense_Mutation p.A1144S 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-BD-A2L6-01 15 92459662 92459662 G A SLCO3A1 Missense_Mutation p.R207Q 0.42 tolerated(0.12) benign(0.036) TCGA-BD-A2L6-01 16 22120822 22120822 G A VWA3A Missense_Mutation p.G168E 0.36 tolerated(0.11) probably_damaging(0.992) TCGA-BD-A2L6-01 16 23700573 23700573 G C PLK1 Missense_Mutation p.D429H 0.13 deleterious(0) probably_damaging(1) TCGA-BD-A2L6-01 16 74943789 74943789 T C WDR59 Silent p.K472K 0.46 TCGA-BD-A2L6-01 16 77228317 77228317 G T MON1B Silent p.R187R 0.41 TCGA-BD-A2L6-01 17 10614393 10614393 T - ADPRM Frame_Shift_Del p.L321* 0.42 TCGA-BD-A2L6-01 17 26110007 26110007 G A NOS2 Missense_Mutation p.P198L 0.36 deleterious(0) probably_damaging(1) TCGA-BD-A2L6-01 17 34956743 34956743 G A DHRS11 3'UTR 0.43 TCGA-BD-A2L6-01 17 36889706 36889706 T G CISD3 Nonstop_Mutation p.*128Gext*29 0.50 TCGA-BD-A2L6-01 17 45608887 45608887 T A NPEPPS Missense_Mutation p.F74Y 0.32 deleterious(0.03) probably_damaging(0.962) TCGA-BD-A2L6-01 17 62020305 62020305 A G SCN4A Missense_Mutation p.M1390T 0.37 deleterious(0.02) benign(0.281) TCGA-BD-A2L6-01 17 67144897 67144897 A G ABCA10 3'UTR 0.09 TCGA-BD-A2L6-01 17 72363763 72363763 C T GPR142 Missense_Mutation p.S40F 0.31 tolerated_low_confidence(0.07) benign(0.019) TCGA-BD-A2L6-01 17 74473344 74473344 A T RHBDF2 Missense_Mutation p.S309T 0.32 tolerated(0.12) probably_damaging(0.999) TCGA-BD-A2L6-01 18 18629104 18629105 - A ROCK1 Frame_Shift_Ins p.W122Lfs*25 0.10 TCGA-BD-A2L6-01 18 32823306 32823306 T C ZNF397 Intron 0.15 TCGA-BD-A2L6-01 19 12978549 12978549 G C MAST1 Missense_Mutation p.R775P 0.25 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-BD-A2L6-01 19 34887542 34887542 C A GPI Silent p.R428R 0.31 TCGA-BD-A2L6-01 19 42212618 42212618 C A CEA 5'UTR 0.40 TCGA-BD-A2L6-01 19 46812017 46812017 G A HIF3A Silent p.K182K 0.32 TCGA-BD-A2L6-01 1 11863501 11863501 T C MTHFR 5'Flank 0.29 TCGA-BD-A2L6-01 1 156618360 156618360 G C BCAN Missense_Mutation p.G257A 0.36 deleterious(0) probably_damaging(1) TCGA-BD-A2L6-01 1 157014243 157014243 T C ARHGEF11 5'UTR 0.08 TCGA-BD-A2L6-01 1 160801203 160801203 T G CD244 Missense_Mutation p.Q349H 0.14 tolerated(0.55) benign(0.001) TCGA-BD-A2L6-01 1 204588961 204588961 C A LRRN2 Missense_Mutation p.D54Y 0.41 deleterious(0) probably_damaging(1) TCGA-BD-A2L6-01 1 207739189 207739189 A G CR1 Silent p.Q1291Q 0.40 TCGA-BD-A2L6-01 1 211749145 211749145 T A SLC30A1 Missense_Mutation p.H370L 0.40 deleterious(0) probably_damaging(1) TCGA-BD-A2L6-01 1 216420124 216420124 T A USH2A Missense_Mutation p.K871I 0.37 probably_damaging(0.984) TCGA-BD-A2L6-01 1 51984939 51984939 G C EPS15 5'UTR 0.31 TCGA-BD-A2L6-01 1 6257784 6257785 - T RPL22 Frame_Shift_Ins p.K16Efs*9 0.32 TCGA-BD-A2L6-01 1 78479088 78479088 G A DNAJB4 Missense_Mutation p.D189N 0.43 tolerated(0.06) benign(0.045) TCGA-BD-A2L6-01 20 20177325 20177325 C T C20orf26 Missense_Mutation p.R568W 0.57 deleterious(0.01) possibly_damaging(0.854) TCGA-BD-A2L6-01 20 35807862 35807862 T C MROH8 Silent p.E34E 0.08 TCGA-BD-A2L6-01 20 489179 489184 GGCACG - CSNK2A1 In_Frame_Del p.V5_P6del 0.28 TCGA-BD-A2L6-01 21 28211905 28211905 C A ADAMTS1 Splice_Site p.X676_splice 0.46 TCGA-BD-A2L6-01 21 31802993 31802993 C A KRTAP13-4 Missense_Mutation p.P134T 0.48 deleterious(0.01) probably_damaging(0.956) TCGA-BD-A2L6-01 21 33976524 33976524 C A AP000275.65 Missense_Mutation p.A149S 0.45 deleterious(0.02) probably_damaging(0.925) TCGA-BD-A2L6-01 22 37627330 37627330 T C RAC2 Missense_Mutation p.K130R 0.39 tolerated_low_confidence(0.55) benign(0.034) TCGA-BD-A2L6-01 2 109384278 109384278 T C RANBP2 Missense_Mutation p.V2428A 0.06 deleterious(0.05) benign(0.281) TCGA-BD-A2L6-01 2 122485127 122485127 C T NIFK 3'UTR 0.30 TCGA-BD-A2L6-01 2 183847561 183847561 T C NCKAP1 Missense_Mutation p.D405G 0.44 deleterious(0) possibly_damaging(0.856) TCGA-BD-A2L6-01 2 220354314 220354314 G A SPEG Silent p.A2858A 0.35 TCGA-BD-A2L6-01 2 39213099 39213099 G A SOS1 Missense_Mutation p.P1290S 0.40 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-BD-A2L6-01 2 54081699 54081699 C T GPR75 Silent p.L65L 0.41 TCGA-BD-A2L6-01 2 71592562 71592563 - A ZNF638 Frame_Shift_Ins p.A577Sfs*16 0.36 TCGA-BD-A2L6-01 3 112080568 112080568 T C CD200 3'UTR 0.46 TCGA-BD-A2L6-01 3 133476711 133476712 - G TF Frame_Shift_Ins p.V324Gfs*14 0.35 TCGA-BD-A2L6-01 3 133476713 133476713 T C TF Missense_Mutation p.V324A 0.36 deleterious(0) probably_damaging(0.963) TCGA-BD-A2L6-01 3 47453376 47453376 A T PTPN23 Missense_Mutation p.E1331V 0.42 probably_damaging(0.996) TCGA-BD-A2L6-01 3 49153563 49153563 C T USP19 Missense_Mutation p.C463Y 0.45 tolerated(1) benign(0.357) TCGA-BD-A2L6-01 4 120982128 120982128 G T MAD2L1 Missense_Mutation p.P116T 0.42 tolerated(0.12) benign(0.002) TCGA-BD-A2L6-01 4 189065204 189065204 T A TRIML1 Nonsense_Mutation p.L258* 0.39 TCGA-BD-A2L6-01 4 76579227 76579227 A C G3BP2 Silent p.P255P 0.67 TCGA-BD-A2L6-01 4 85711036 85711036 G A WDFY3 Missense_Mutation p.S1171L 0.72 tolerated(0.14) benign(0.007) TCGA-BD-A2L6-01 5 140803121 140803121 A G PCDHGA11 Missense_Mutation p.Y776C 0.36 deleterious_low_confidence(0.05) possibly_damaging(0.665) TCGA-BD-A2L6-01 5 174953760 174953760 C T SFXN1 3'UTR 0.33 TCGA-BD-A2L6-01 5 35793440 35793440 G T SPEF2 Missense_Mutation p.M1578I 0.37 tolerated(0.17) benign(0.002) TCGA-BD-A2L6-01 5 54952566 54952566 A C SLC38A9 Missense_Mutation p.L245R 0.35 tolerated(0.35) benign(0.362) TCGA-BD-A2L6-01 5 92929524 92929524 T C NR2F1 Silent p.P416P 0.05 TCGA-BD-A2L6-01 6 129571345 129571345 T C LAMA2 Missense_Mutation p.M624T 0.59 deleterious(0.01) benign(0.002) TCGA-BD-A2L6-01 6 36652024 36652024 G T CDKN1A Missense_Mutation p.W49L 0.58 deleterious(0) probably_damaging(0.999) TCGA-BD-A2L6-01 6 43027209 43027209 G C MRPL2 5'UTR 0.33 TCGA-BD-A2L6-01 6 86215679 86215679 A G SNX14 3'UTR 0.53 TCGA-BD-A2L6-01 6 97562045 97562045 C A KLHL32 Missense_Mutation p.H338Q 0.31 tolerated(1) probably_damaging(0.998) TCGA-BD-A2L6-01 7 12729892 12729892 A T ARL4A 3'UTR 0.36 TCGA-BD-A2L6-01 7 143175217 143175217 C T TAS2R41 Silent p.F84F 0.11 TCGA-BD-A2L6-01 7 82784756 82784756 G T PCLO Missense_Mutation p.P401T 0.37 possibly_damaging(0.803) TCGA-BD-A2L6-01 8 113668402 113668402 A G CSMD3 Silent p.G995G 0.31 TCGA-BD-A2L6-01 8 11702606 11702606 A G CTSB 3'UTR 0.49 TCGA-BD-A2L6-01 8 141684416 141684416 C T PTK2 Missense_Mutation p.S907N 0.37 tolerated(0.12) benign(0.423) TCGA-BD-A2L6-01 8 144808725 144808725 A C FAM83H Missense_Mutation p.L969R 0.45 deleterious(0) possibly_damaging(0.602) TCGA-BD-A2L6-01 8 28971063 28971063 G C KIF13B Missense_Mutation p.Q1283E 0.29 tolerated(0.22) benign(0.391) TCGA-BD-A2L6-01 9 113550088 113550088 T - MUSK Frame_Shift_Del p.F633Lfs*7 0.29 TCGA-BD-A2L6-01 9 114305543 114305543 C T ZNF483 3'UTR 0.50 TCGA-BD-A2L6-01 9 117086007 117086007 A T ORM1 Missense_Mutation p.Q60L 0.44 tolerated(0.08) benign(0.018) TCGA-BD-A2L6-01 9 130587248 130587248 A T ENG Silent p.T274T 0.42 TCGA-BD-A2L6-01 9 26995539 26995539 C A LRRC19 Nonsense_Mutation p.E365* 0.42 TCGA-BD-A2L6-01 9 66553883 66553883 G T RP11-262H14.4 RNA 0.11 TCGA-BD-A2L6-01 9 74586499 74586499 C T C9orf85 Silent p.C96C 0.49 TCGA-BD-A2L6-01 X 148037577 148037577 A G AFF2 Missense_Mutation p.R668G 0.83 deleterious(0.01) probably_damaging(0.994) TCGA-BD-A2L6-01 X 70604840 70604840 A G TAF1 Missense_Mutation p.T743A 0.79 tolerated(0.08) probably_damaging(0.998) TCGA-BD-A2L6-01 X 92928310 92928310 A G NAP1L3 5'UTR 0.15 TCGA-BD-A3EP-01 10 100013493 100013493 C T LOXL4 Missense_Mutation p.R551H 0.16 deleterious(0) probably_damaging(1) TCGA-BD-A3EP-01 10 23393130 23393130 C G MSRB2 Missense_Mutation p.T59S 0.21 deleterious(0.03) benign(0.234) TCGA-BD-A3EP-01 11 10503698 10503698 G T AMPD3 Missense_Mutation p.R181L 0.16 deleterious(0.02) benign(0.438) TCGA-BD-A3EP-01 11 113085206 113085206 T A NCAM1 Silent p.S403S 0.08 TCGA-BD-A3EP-01 11 121058616 121058616 C T TECTA Silent p.T2025T 0.26 TCGA-BD-A3EP-01 11 123489856 123489856 C - GRAMD1B Frame_Shift_Del p.Q685Nfs*20 0.22 TCGA-BD-A3EP-01 11 132527021 132527021 T A OPCML Missense_Mutation p.N121Y 0.22 deleterious(0.01) probably_damaging(0.961) TCGA-BD-A3EP-01 11 4936238 4936238 A C OR51G2 Missense_Mutation p.I219S 0.27 deleterious(0) probably_damaging(0.999) TCGA-BD-A3EP-01 11 5462447 5462447 G T OR51I1 Missense_Mutation p.L100M 0.27 tolerated(0.14) probably_damaging(0.999) TCGA-BD-A3EP-01 11 66982895 66982895 A T KDM2A Missense_Mutation p.M191L 0.22 deleterious(0) benign(0.004) TCGA-BD-A3EP-01 11 78775891 78775891 C T TENM4 Missense_Mutation p.V129M 0.25 tolerated_low_confidence(0.8) benign(0.025) TCGA-BD-A3EP-01 11 89956173 89956173 G A CHORDC1 5'UTR 0.28 TCGA-BD-A3EP-01 11 92616495 92616495 C A FAT3 Silent p.A4291A 0.41 TCGA-BD-A3EP-01 12 50281167 50281167 A T FAIM2 Splice_Site p.X267_splice 0.20 TCGA-BD-A3EP-01 12 50357929 50357929 G C AQP5 Missense_Mutation p.V195L 0.12 tolerated(0.16) benign(0.001) TCGA-BD-A3EP-01 12 52699516 52699516 G T KRT86 Nonsense_Mutation p.E324* 0.20 TCGA-BD-A3EP-01 12 56088716 56088716 C T ITGA7 Missense_Mutation p.G685E 0.11 tolerated(0.22) probably_damaging(0.955) TCGA-BD-A3EP-01 12 57577928 57577928 C T LRP1 Missense_Mutation p.S1997F 0.11 probably_damaging(0.999) TCGA-BD-A3EP-01 12 81014071 81014071 T A PTPRQ Missense_Mutation p.I1839N 0.20 deleterious(0) benign(0.035) TCGA-BD-A3EP-01 13 31724175 31724175 C A HSPH1 Missense_Mutation p.K351N 0.03 deleterious(0) probably_damaging(0.999) TCGA-BD-A3EP-01 13 52585489 52585489 C A ATP7B 5'UTR 0.20 TCGA-BD-A3EP-01 14 105517686 105517686 A TT GPR132 Frame_Shift_Ins p.L263Qfs*42 0.20 TCGA-BD-A3EP-01 14 105716119 105716119 G A BTBD6 Missense_Mutation p.V190I 0.31 tolerated(0.05) benign(0.126) TCGA-BD-A3EP-01 14 31107344 31107345 - ACTAT SCFD1 Frame_Shift_Ins p.E112Yfs*7 0.28 TCGA-BD-A3EP-01 14 35577440 35577440 T A PPP2R3C Missense_Mutation p.Q136L 0.16 tolerated(0.38) benign(0.003) TCGA-BD-A3EP-01 14 55467661 55467661 C T WDHD1 Missense_Mutation p.G248D 0.41 deleterious(0) probably_damaging(0.998) TCGA-BD-A3EP-01 14 95556981 95556981 C T DICER1 Missense_Mutation p.D1875N 0.36 deleterious(0.04) benign(0.032) TCGA-BD-A3EP-01 15 42556385 42556385 A C TMEM87A Missense_Mutation p.L103W 0.32 tolerated(0.18) benign(0.025) TCGA-BD-A3EP-01 15 45270751 45270751 C T C15orf43 Silent p.T196T 0.03 TCGA-BD-A3EP-01 15 48433586 48433586 C A MYEF2 3'UTR 0.23 TCGA-BD-A3EP-01 15 65621829 65621829 G A IGDCC3 Missense_Mutation p.R702W 0.17 deleterious_low_confidence(0.05) benign(0.007) TCGA-BD-A3EP-01 15 81625157 81625157 G T TMC3 Missense_Mutation p.A969D 0.25 deleterious_low_confidence(0.05) benign(0.197) TCGA-BD-A3EP-01 16 14041704 14041704 T C ERCC4 Missense_Mutation p.Y751H 0.39 tolerated(0.35) benign(0.102) TCGA-BD-A3EP-01 16 28606943 28606943 C T SULT1A2 Missense_Mutation p.E68K 0.38 tolerated(0.08) benign(0.004) TCGA-BD-A3EP-01 16 70883690 70883690 G A HYDIN Missense_Mutation p.A4271V 0.32 possibly_damaging(0.866) TCGA-BD-A3EP-01 16 74452060 74452060 G C CLEC18B Missense_Mutation p.A118G 0.28 tolerated(0.29) benign(0.023) TCGA-BD-A3EP-01 17 37341067 37341067 G T CACNB1 Silent p.I233I 0.15 TCGA-BD-A3EP-01 17 43912204 43912204 C T CRHR1 3'UTR 0.45 TCGA-BD-A3EP-01 17 45914305 45914305 C T LRRC46 Missense_Mutation p.P262L 0.06 tolerated(0.11) benign(0.03) TCGA-BD-A3EP-01 17 48603556 48603556 C T MYCBPAP Silent p.S742S 0.33 TCGA-BD-A3EP-01 17 62081480 62081480 G C C17orf72 3'Flank 0.27 TCGA-BD-A3EP-01 17 62892854 62892854 C A LRRC37A3 Missense_Mutation p.Q174H 0.47 deleterious(0.01) benign(0.005) TCGA-BD-A3EP-01 17 67183861 67183861 A T ABCA10 Missense_Mutation p.F764Y 0.22 deleterious(0) probably_damaging(0.934) TCGA-BD-A3EP-01 17 72741039 72741039 C G RAB37 Missense_Mutation p.R159G 0.24 deleterious(0.01) possibly_damaging(0.564) TCGA-BD-A3EP-01 17 73996268 73996268 G T TEN1 Silent p.G99G 0.27 TCGA-BD-A3EP-01 17 7578478 7578478 G T TP53 Missense_Mutation p.P151H 0.26 deleterious(0) possibly_damaging(0.773) TCGA-BD-A3EP-01 17 80888501 80888501 A G TBCD Missense_Mutation p.D1032G 0.20 deleterious(0.01) possibly_damaging(0.895) TCGA-BD-A3EP-01 18 8813094 8813094 G C SOGA2 Missense_Mutation p.V908L 0.10 deleterious(0.04) benign(0.079) TCGA-BD-A3EP-01 19 18266738 18266738 C T PIK3R2 Missense_Mutation p.R17W 0.40 deleterious(0) possibly_damaging(0.857) TCGA-BD-A3EP-01 19 21720474 21720474 A T ZNF429 Missense_Mutation p.E540V 0.24 deleterious(0.02) possibly_damaging(0.597) TCGA-BD-A3EP-01 19 32873386 32873386 G C ZNF507 Missense_Mutation p.G792R 0.18 deleterious(0) probably_damaging(0.995) TCGA-BD-A3EP-01 19 48047823 48047823 C T ZNF541 Missense_Mutation p.A655T 0.31 tolerated(1) benign(0.001) TCGA-BD-A3EP-01 19 57334962 57334962 G A PEG3 Silent p.F160F 0.22 TCGA-BD-A3EP-01 19 814544 814544 A G LPPR3 Missense_Mutation p.F269L 0.10 deleterious(0) probably_damaging(0.943) TCGA-BD-A3EP-01 1 100340249 100340249 G A AGL Missense_Mutation p.R322K 0.13 tolerated(1) benign(0) TCGA-BD-A3EP-01 1 152759984 152759984 C A LCE1E Missense_Mutation p.S70Y 0.48 deleterious_low_confidence(0) unknown(0) TCGA-BD-A3EP-01 1 155110121 155110121 G A SLC50A1 Missense_Mutation p.E123K 0.30 tolerated(0.49) benign(0.055) TCGA-BD-A3EP-01 1 158061246 158061246 C T KIRREL Silent p.T457T 0.17 TCGA-BD-A3EP-01 1 169951194 169951194 C T KIFAP3 Missense_Mutation p.G573R 0.03 deleterious(0) probably_damaging(0.998) TCGA-BD-A3EP-01 1 173476077 173476077 A C SLC9C2 Missense_Mutation p.I1048S 0.20 deleterious(0) possibly_damaging(0.878) TCGA-BD-A3EP-01 1 207133090 207133090 T C FCAMR Missense_Mutation p.M503V 0.27 tolerated(1) benign(0.001) TCGA-BD-A3EP-01 1 22159859 22159872 AAGTAGGGCACCAC - HSPG2 Frame_Shift_Del p.V3662Hfs*109 0.12 TCGA-BD-A3EP-01 1 225525167 225525167 C T DNAH14 Missense_Mutation p.A2562V 0.17 deleterious(0.02) possibly_damaging(0.787) TCGA-BD-A3EP-01 1 65335078 65335078 T A JAK1 Missense_Mutation p.E188V 0.29 deleterious(0) probably_damaging(0.999) TCGA-BD-A3EP-01 20 168643 168643 C T DEFB128 Missense_Mutation p.D56N 0.23 tolerated(0.12) benign(0.06) TCGA-BD-A3EP-01 20 309769 309769 A C SOX12 3'UTR 0.22 TCGA-BD-A3EP-01 20 34542697 34542697 C T SCAND1 5'UTR 0.32 TCGA-BD-A3EP-01 20 3783819 3783819 G C CDC25B Missense_Mutation p.R441T 0.04 deleterious(0) probably_damaging(1) TCGA-BD-A3EP-01 20 53226977 53226977 A C DOK5 Missense_Mutation p.E217A 0.11 deleterious(0) probably_damaging(0.971) TCGA-BD-A3EP-01 22 18299504 18299504 G C MICAL3 Silent p.L1799L 0.45 TCGA-BD-A3EP-01 22 23247196 23247196 A C IGLJ3 Missense_Mutation p.T48P 0.15 deleterious_low_confidence(0) possibly_damaging(0.711) TCGA-BD-A3EP-01 22 29153457 29153457 A C HSCB 3'UTR 0.38 TCGA-BD-A3EP-01 22 40139627 40139627 G A ENTHD1 3'UTR 0.46 TCGA-BD-A3EP-01 22 46794440 46794440 C A CELSR1 Missense_Mutation p.G1836V 0.29 deleterious(0) probably_damaging(0.951) TCGA-BD-A3EP-01 2 113831957 113831957 G T IL1F10 Silent p.L28L 0.08 TCGA-BD-A3EP-01 2 159481873 159481873 C T PKP4 Nonsense_Mutation p.Q363* 0.18 TCGA-BD-A3EP-01 2 228012135 228012135 C T COL4A4 Missense_Mutation p.G22D 0.14 benign(0.004) TCGA-BD-A3EP-01 2 23980414 23980414 G T ATAD2B Missense_Mutation p.P1318T 0.24 tolerated(0.22) benign(0) TCGA-BD-A3EP-01 2 240982156 240982156 G A PRR21 Missense_Mutation p.L82F 0.07 tolerated_low_confidence(0.27) unknown(0) TCGA-BD-A3EP-01 2 240984862 240984862 G C OR6B3 Missense_Mutation p.P210A 0.20 deleterious(0) probably_damaging(0.92) TCGA-BD-A3EP-01 2 24261849 24261849 C T C2orf44 Silent p.V172V 0.26 TCGA-BD-A3EP-01 2 32613893 32613893 A - BIRC6 Frame_Shift_Del p.I242* 0.16 TCGA-BD-A3EP-01 2 84932627 84932627 C A DNAH6 Missense_Mutation p.A2828E 0.18 deleterious(0) probably_damaging(0.995) TCGA-BD-A3EP-01 3 101540640 101540640 A G NXPE3 Missense_Mutation p.I508V 0.27 tolerated(1) benign(0.002) TCGA-BD-A3EP-01 3 108723940 108723940 C A MORC1 Missense_Mutation p.V664F 0.22 deleterious(0) possibly_damaging(0.595) TCGA-BD-A3EP-01 3 121980604 121980604 A T CASR Missense_Mutation p.E241V 0.09 tolerated(0.07) benign(0.199) TCGA-BD-A3EP-01 3 122849447 122849447 C A PDIA5 Silent p.V298V 0.21 TCGA-BD-A3EP-01 3 131624109 131624109 T A CPNE4 Missense_Mutation p.E60V 0.21 deleterious(0) possibly_damaging(0.864) TCGA-BD-A3EP-01 3 132337601 132337601 C T ACAD11 Missense_Mutation p.E431K 0.27 deleterious(0.02) possibly_damaging(0.464) TCGA-BD-A3EP-01 3 152881782 152881782 A G RAP2B 3'UTR 0.36 TCGA-BD-A3EP-01 3 182566270 182566270 C T ATP11B Missense_Mutation p.A259V 0.24 tolerated(0.08) probably_damaging(0.954) TCGA-BD-A3EP-01 3 186383833 186383833 A G HRG Missense_Mutation p.I5V 0.23 tolerated(0.75) benign(0.031) TCGA-BD-A3EP-01 3 186461619 186461621 TCT A KNG1 3'Flank 0.20 TCGA-BD-A3EP-01 3 43344896 43344896 G T SNRK Missense_Mutation p.M67I 0.30 deleterious(0) probably_damaging(0.981) TCGA-BD-A3EP-01 3 49362451 49362451 C A USP4 Missense_Mutation p.R170L 0.27 deleterious(0) benign(0.204) TCGA-BD-A3EP-01 3 56680996 56680996 G A FAM208A Missense_Mutation p.S590L 0.12 tolerated(0.06) benign(0.062) TCGA-BD-A3EP-01 4 1701341 1701341 G C SLBP Missense_Mutation p.N143K 0.18 deleterious(0) possibly_damaging(0.562) TCGA-BD-A3EP-01 4 71115098 71115098 T C CSN3 Silent p.T157T 0.10 TCGA-BD-A3EP-01 5 130764892 130764892 G A CTC-432M15.3 Missense_Mutation p.P1545S 0.04 tolerated_low_confidence(0.09) benign(0.013) TCGA-BD-A3EP-01 5 140591580 140591580 T C PCDHB12 3'UTR 0.13 TCGA-BD-A3EP-01 5 156565994 156565994 G T MED7 Missense_Mutation p.A150D 0.04 deleterious(0) probably_damaging(0.979) TCGA-BD-A3EP-01 5 64748641 64748641 C T ADAMTS6 Missense_Mutation p.V246M 0.18 deleterious(0) benign(0.2) TCGA-BD-A3EP-01 5 74037421 74037421 T C GFM2 Missense_Mutation p.D288G 0.23 deleterious(0) probably_damaging(1) TCGA-BD-A3EP-01 6 144184607 144184607 A G LTV1 Silent p.R457R 0.29 TCGA-BD-A3EP-01 6 148846461 148846461 A G SASH1 Missense_Mutation p.N415S 0.24 tolerated(0.09) probably_damaging(0.998) TCGA-BD-A3EP-01 6 157522125 157522125 C A ARID1B Missense_Mutation p.A1466E 0.11 benign(0.228) TCGA-BD-A3EP-01 6 27419013 27419013 C G ZNF184 3'UTR 0.04 TCGA-BD-A3EP-01 6 27799271 27799271 C A HIST1H4K Missense_Mutation p.G12V 0.16 deleterious_low_confidence(0) unknown(0) TCGA-BD-A3EP-01 6 43325451 43325451 C T ZNF318 Missense_Mutation p.G201S 0.22 probably_damaging(0.966) TCGA-BD-A3EP-01 6 49936572 49936572 T A DEFB113 Nonsense_Mutation p.K23* 0.20 TCGA-BD-A3EP-01 6 55639030 55639030 T C BMP5 Missense_Mutation p.N282D 0.14 tolerated(0.95) benign(0.02) TCGA-BD-A3EP-01 6 9933543 9933543 T C OFCC1 Splice_Site p.X5_splice 0.27 TCGA-BD-A3EP-01 7 148456419 148456422 CTGT - CUL1 Frame_Shift_Del p.L171Sfs*4 0.20 TCGA-BD-A3EP-01 7 21469601 21469601 A G SP4 Missense_Mutation p.N273S 0.25 tolerated(0.89) benign(0.001) TCGA-BD-A3EP-01 7 44612257 44612257 C A DDX56 Missense_Mutation p.R157L 0.24 tolerated(0.18) benign(0.01) TCGA-BD-A3EP-01 7 72667574 72667574 T A GTF2IRD2P1 RNA 0.04 TCGA-BD-A3EP-01 7 82389961 82389961 A G PCLO Silent p.S5094S 0.22 TCGA-BD-A3EP-01 8 100829851 100829851 A C VPS13B Missense_Mutation p.Q2752H 0.21 tolerated(0.1) benign(0.216) TCGA-BD-A3EP-01 8 124705521 124705521 C T ANXA13 Nonsense_Mutation p.W227* 0.05 TCGA-BD-A3EP-01 8 140630800 140630800 G A KCNK9 Missense_Mutation p.P276S 0.21 tolerated(0.32) benign(0.001) TCGA-BD-A3EP-01 8 145112137 145112137 C T OPLAH Silent p.L503L 0.21 TCGA-BD-A3EP-01 8 145634528 145634528 G T CPSF1 Nonsense_Mutation p.Y5* 0.27 TCGA-BD-A3EP-01 8 30701385 30701385 G A TEX15 Nonsense_Mutation p.R1717* 0.33 TCGA-BD-A3EP-01 8 42176090 42176090 C G IKBKB Missense_Mutation p.L421V 0.16 deleterious(0) probably_damaging(0.997) TCGA-BD-A3EP-01 8 67974167 67974167 G A COPS5 Missense_Mutation p.A22V 0.08 tolerated(1) benign(0.001) TCGA-BD-A3EP-01 8 75927121 75927121 G A CRISPLD1 Missense_Mutation p.G234D 0.22 deleterious(0.01) benign(0.082) TCGA-BD-A3EP-01 9 131256869 131256872 TGAG - ODF2 Frame_Shift_Del p.E612Afs*50 0.26 TCGA-BD-A3EP-01 9 135204112 135204112 A G SETX Missense_Mutation p.I958T 0.14 tolerated(0.06) benign(0.011) TCGA-BD-A3EP-01 9 140991051 140991051 A G CACNA1B Missense_Mutation p.D1737G 0.11 deleterious(0.01) benign(0.263) TCGA-BD-A3EP-01 9 17409335 17409335 T C CNTLN Missense_Mutation p.I887T 0.07 tolerated(0.08) possibly_damaging(0.481) TCGA-BD-A3EP-01 9 18474223 18474223 A G ADAMTSL1 5'UTR 0.13 TCGA-BD-A3EP-01 9 19346399 19346399 A G DENND4C Missense_Mutation p.D1162G 0.04 tolerated(0.13) benign(0) TCGA-BD-A3EP-01 9 27190548 27190548 C G TEK Missense_Mutation p.A450G 0.10 deleterious(0) possibly_damaging(0.61) TCGA-BD-A3EP-01 9 35104551 35104551 A T FAM214B 3'UTR 0.17 TCGA-BD-A3EP-01 9 96021717 96021717 C A WNK2 Missense_Mutation p.P963T 0.16 unknown(0) TCGA-BD-A3EP-01 X 100658874 100658874 G T GLA Silent p.P98P 0.35 TCGA-BD-A3EP-01 X 114424946 114424946 C T RBMXL3 Silent p.A314A 0.09 TCGA-BD-A3EP-01 X 13681980 13681980 C A TCEANC 3'UTR 0.33 TCGA-BD-A3EP-01 X 144910573 144910573 T C TMEM257 3'UTR 0.38 TCGA-BD-A3EP-01 X 150884642 150884642 A G FATE1 Silent p.A17A 0.27 TCGA-BD-A3EP-01 X 151815446 151815446 A C GABRQ Missense_Mutation p.K115T 0.40 deleterious(0.04) probably_damaging(0.987) TCGA-BD-A3EP-01 X 3241431 3241431 A T MXRA5 Missense_Mutation p.F765L 0.39 deleterious(0) probably_damaging(0.994) TCGA-BD-A3EP-01 X 70445066 70445069 TGTT - GJB1 3'UTR 0.39 TCGA-BD-A3EP-01 X 70607151 70607151 A G TAF1 Missense_Mutation p.H776R 0.36 deleterious(0) possibly_damaging(0.51) TCGA-BD-A3ER-01 10 46999383 46999383 C A GPRIN2 Missense_Mutation p.A168D 0.14 tolerated(0.11) possibly_damaging(0.572) TCGA-BD-A3ER-01 10 61122243 61122243 C A FAM13C 5'UTR 0.40 TCGA-BD-A3ER-01 10 70706314 70706314 A G DDX50 Silent p.R714R 0.11 TCGA-BD-A3ER-01 11 1857262 1857295 AAGGGTGACGGGGGAAGGGCAGACCCCATGCCCT - SYT8 Intron 0.13 TCGA-BD-A3ER-01 11 55136301 55136301 C A OR4A15 Silent p.I314I 0.27 TCGA-BD-A3ER-01 11 5863124 5863124 G A OR52E6 Missense_Mutation p.P2S 0.32 tolerated_low_confidence(1) benign(0) TCGA-BD-A3ER-01 12 132546658 132546658 C A EP400 Missense_Mutation p.P2630T 0.55 possibly_damaging(0.803) TCGA-BD-A3ER-01 12 15776172 15776172 T C EPS8 Missense_Mutation p.N759D 0.20 deleterious(0) benign(0.146) TCGA-BD-A3ER-01 12 40692294 40692294 G C LRRK2 Missense_Mutation p.G1116R 0.25 deleterious(0) probably_damaging(0.999) TCGA-BD-A3ER-01 12 53038813 53038813 G C KRT2 Missense_Mutation p.S637C 0.31 deleterious_low_confidence(0) unknown(0) TCGA-BD-A3ER-01 12 57850666 57850666 A C INHBE 3'UTR 0.32 TCGA-BD-A3ER-01 12 7073269 7073269 C G PTPN6 3'Flank 0.31 TCGA-BD-A3ER-01 13 32972543 32972543 T G BRCA2 Missense_Mutation p.F3298C 0.05 deleterious(0) probably_damaging(0.999) TCGA-BD-A3ER-01 13 46619587 46619587 C T ZC3H13 Missense_Mutation p.S19N 0.27 unknown(0) TCGA-BD-A3ER-01 14 33684454 33684454 T G NPAS3 Missense_Mutation p.F69L 0.06 tolerated(0.34) benign(0.153) TCGA-BD-A3ER-01 15 33261538 33261538 G T FMN1 Nonsense_Mutation p.C565* 0.23 TCGA-BD-A3ER-01 15 33765652 33765652 C T RYR3 Silent p.T28T 0.22 TCGA-BD-A3ER-01 16 4414675 4414675 C A CORO7 Nonsense_Mutation p.E354* 0.25 TCGA-BD-A3ER-01 16 77323286 77323286 C T ADAMTS18 Missense_Mutation p.G1142E 0.23 deleterious(0) probably_damaging(0.999) TCGA-BD-A3ER-01 17 28386624 28386624 G A EFCAB5 Nonsense_Mutation p.W881* 0.23 TCGA-BD-A3ER-01 17 61995390 61995390 G A GH1 Missense_Mutation p.T93I 0.29 tolerated(0.11) benign(0.032) TCGA-BD-A3ER-01 17 78321423 78321423 A T RNF213 Silent p.T3096T 0.26 TCGA-BD-A3ER-01 18 30795652 30795652 C A CCDC178 Missense_Mutation p.R647L 0.24 tolerated(0.41) benign(0.171) TCGA-BD-A3ER-01 18 43523169 43523169 G A EPG5 Missense_Mutation p.A634V 0.23 tolerated(0.22) probably_damaging(0.971) TCGA-BD-A3ER-01 19 17756598 17756598 G A UNC13A Silent p.D747D 0.24 TCGA-BD-A3ER-01 19 2834344 2834344 C T ZNF554 Silent p.L371L 0.30 TCGA-BD-A3ER-01 19 36159531 36159531 G T UPK1A Missense_Mutation p.C87F 0.04 deleterious(0.03) possibly_damaging(0.462) TCGA-BD-A3ER-01 19 41173290 41173290 G C NUMBL 3'UTR 0.36 TCGA-BD-A3ER-01 19 4290692 4290692 T C SHD 3'UTR 0.30 TCGA-BD-A3ER-01 1 10197205 10197205 A G UBE4B Missense_Mutation p.I769V 0.44 tolerated(0.13) benign(0.262) TCGA-BD-A3ER-01 1 156851414 156851414 T A NTRK1 Missense_Mutation p.Y791N 0.13 deleterious(0) probably_damaging(0.998) TCGA-BD-A3ER-01 1 158154023 158154023 A G CD1D 3'UTR 0.05 TCGA-BD-A3ER-01 1 160261619 160261619 C T COPA Missense_Mutation p.R1092H 0.20 deleterious(0.02) possibly_damaging(0.854) TCGA-BD-A3ER-01 1 186915820 186915820 T G PLA2G4A Missense_Mutation p.F362C 0.36 deleterious(0) probably_damaging(0.999) TCGA-BD-A3ER-01 1 209785182 209785182 C T CAMK1G Missense_Mutation p.H321Y 0.32 tolerated(0.09) possibly_damaging(0.512) TCGA-BD-A3ER-01 1 225510493 225510493 A G DNAH14 Missense_Mutation p.I2409V 0.15 tolerated(0.58) benign(0.407) TCGA-BD-A3ER-01 1 233122171 233122171 C A PCNXL2 Silent p.T1969T 0.34 TCGA-BD-A3ER-01 1 33235826 33235826 C A KIAA1522 Missense_Mutation p.T349N 0.44 deleterious(0) unknown(0) TCGA-BD-A3ER-01 1 93687490 93687490 C T CCDC18 Silent p.I777I 0.20 TCGA-BD-A3ER-01 20 35757539 35757539 C T MROH8 Missense_Mutation p.V588M 0.36 deleterious(0.01) probably_damaging(0.942) TCGA-BD-A3ER-01 21 31709697 31709697 C A KRTAP27-1 Missense_Mutation p.R97M 0.25 deleterious(0) probably_damaging(0.951) TCGA-BD-A3ER-01 22 18370147 18370147 G A MICAL3 Missense_Mutation p.S649F 0.06 probably_damaging(0.984) TCGA-BD-A3ER-01 22 30204137 30204137 C A ASCC2 Nonsense_Mutation p.E291* 0.23 TCGA-BD-A3ER-01 22 41832827 41832827 T - TOB2 Frame_Shift_Del p.T175Pfs*17 0.18 TCGA-BD-A3ER-01 2 170076975 170076975 A G LRP2 Silent p.D1879D 0.09 TCGA-BD-A3ER-01 2 179453288 179453288 G T TTN Missense_Mutation p.P21055Q 0.30 TCGA-BD-A3ER-01 2 216271096 216271096 C T FN1 Missense_Mutation p.G951R 0.32 tolerated(0.21) probably_damaging(1) TCGA-BD-A3ER-01 2 222290820 222290821 - T EPHA4 Frame_Shift_Ins p.N963Kfs*2 0.21 TCGA-BD-A3ER-01 2 38812823 38812825 AGA - HNRNPLL In_Frame_Del p.L166del 0.27 TCGA-BD-A3ER-01 2 71871124 71871124 A G DYSF Silent p.K1519K 0.24 TCGA-BD-A3ER-01 2 89476070 89476070 G A IGKV2-24 Silent p.T34T 0.25 TCGA-BD-A3ER-01 3 124909349 124909349 G T SLC12A8 Missense_Mutation p.P23H 0.25 tolerated(0.37) benign(0.235) TCGA-BD-A3ER-01 3 152885480 152885480 A G RAP2B 3'UTR 0.06 TCGA-BD-A3ER-01 3 155493583 155493583 C T C3orf33 Missense_Mutation p.V34I 0.20 tolerated(0.16) possibly_damaging(0.887) TCGA-BD-A3ER-01 3 164754186 164754186 C T SI Missense_Mutation p.E836K 0.24 deleterious(0.03) benign(0.011) TCGA-BD-A3ER-01 3 197346698 197346698 T C AC024560.3 RNA 0.06 TCGA-BD-A3ER-01 4 106638756 106638756 C T GSTCD 5'UTR 0.27 TCGA-BD-A3ER-01 4 154214187 154214187 G A TRIM2 Silent p.T169T 0.30 TCGA-BD-A3ER-01 4 183664409 183664409 C T TENM3 Missense_Mutation p.R1156C 0.33 deleterious(0) benign(0.095) TCGA-BD-A3ER-01 4 69512807 69512808 - GGCTTTTG UGT2B15 3'UTR 0.10 TCGA-BD-A3ER-01 4 90844412 90844412 G T MMRN1 Missense_Mutation p.C315F 0.05 tolerated(0.38) benign(0.319) TCGA-BD-A3ER-01 5 160721290 160721290 A T GABRB2 Nonsense_Mutation p.L446* 0.28 TCGA-BD-A3ER-01 5 26903835 26903835 C T CDH9 Missense_Mutation p.E304K 0.04 tolerated(0.74) benign(0.055) TCGA-BD-A3ER-01 5 32724927 32724927 G T NPR3 Splice_Site p.X298_splice 0.21 TCGA-BD-A3ER-01 6 28219692 28219692 G A ZKSCAN4 Silent p.L23L 0.27 TCGA-BD-A3ER-01 6 28219693 28219693 G T ZKSCAN4 Silent p.L22L 0.27 TCGA-BD-A3ER-01 6 33239713 33239713 C T VPS52 5'Flank 0.26 TCGA-BD-A3ER-01 6 83728705 83728705 T C UBE3D Missense_Mutation p.S333G 0.30 tolerated(0.31) benign(0.01) TCGA-BD-A3ER-01 7 123599552 123599552 C G SPAM1 Silent p.L353L 0.27 TCGA-BD-A3ER-01 7 143094441 143094441 T A EPHA1 Missense_Mutation p.Q576L 0.34 tolerated(0.68) benign(0) TCGA-BD-A3ER-01 7 156974970 156974970 T C UBE3C Silent p.G313G 0.27 TCGA-BD-A3ER-01 7 44741215 44741216 - T OGDH Splice_Site p.X878_splice 0.22 TCGA-BD-A3ER-01 7 82585585 82585585 C T PCLO Missense_Mutation p.E1562K 0.17 unknown(0) TCGA-BD-A3ER-01 7 84628841 84628841 C A SEMA3D Missense_Mutation p.W750L 0.27 deleterious(0.05) probably_damaging(0.998) TCGA-BD-A3ER-01 8 29194408 29194408 G A DUSP4 3'UTR 0.20 TCGA-BD-A3ER-01 9 130575923 130575923 C T FPGS 3'UTR 0.28 TCGA-BD-A3ER-01 9 137710559 137710559 G T COL5A1 Missense_Mutation p.A1430S 0.08 unknown(0) TCGA-BD-A3ER-01 9 35044763 35044763 G T C9orf131 Nonsense_Mutation p.E713* 0.24 TCGA-BD-A3ER-01 9 72785641 72785641 G C MAMDC2 Intron 0.23 TCGA-BD-A3ER-01 X 77381487 77381487 T A PGK1 3'UTR 0.77 TCGA-BD-A3ER-01 Y 14885659 14885659 G A USP9Y Missense_Mutation p.D711N 0.07 deleterious(0) probably_damaging(1) TCGA-BW-A5NO-01 10 106959827 106959827 C T SORCS3 Missense_Mutation p.R694W 0.35 deleterious(0) probably_damaging(0.987) TCGA-BW-A5NO-01 10 51562361 51562361 C T MSMB Silent p.D102D 0.06 TCGA-BW-A5NO-01 10 55955547 55955547 G C PCDH15 Missense_Mutation p.Q401E 0.49 tolerated(0.69) benign(0.007) TCGA-BW-A5NO-01 10 7839122 7839122 A G ATP5C1 Missense_Mutation p.I68M 0.31 tolerated(0.14) benign(0.013) TCGA-BW-A5NO-01 10 8006085 8006085 G T TAF3 Silent p.T204T 0.35 TCGA-BW-A5NO-01 10 88478564 88478564 C - LDB3 Frame_Shift_Del p.L652Sfs*56 0.27 TCGA-BW-A5NO-01 11 107920728 107920728 A T CUL5 Missense_Mutation p.I116F 0.08 tolerated(0.05) benign(0.006) TCGA-BW-A5NO-01 11 120350778 120350778 G C ARHGEF12 Missense_Mutation p.Q1292H 0.04 tolerated_low_confidence(0.12) possibly_damaging(0.713) TCGA-BW-A5NO-01 11 123601551 123601551 C T ZNF202 Missense_Mutation p.E16K 0.23 deleterious(0) probably_damaging(0.993) TCGA-BW-A5NO-01 11 22380967 22380967 G T SLC17A6 Missense_Mutation p.G156V 0.11 deleterious(0) possibly_damaging(0.859) TCGA-BW-A5NO-01 11 4566482 4566482 G A OR52M1 Missense_Mutation p.G21E 0.07 deleterious(0) probably_damaging(1) TCGA-BW-A5NO-01 11 4944787 4944787 A G OR51G1 Silent p.S261S 0.07 TCGA-BW-A5NO-01 11 5254093 5254093 A G HBD 3'UTR 0.38 TCGA-BW-A5NO-01 11 56468383 56468383 G A OR9G1 Missense_Mutation p.D174N 0.09 tolerated(0.9) benign(0.029) TCGA-BW-A5NO-01 11 58477973 58477973 T C GLYAT Intron 0.55 TCGA-BW-A5NO-01 11 76893104 76893104 C T MYO7A Silent p.F1004F 0.11 TCGA-BW-A5NO-01 12 109629713 109629713 T A ACACB Missense_Mutation p.M786K 0.18 tolerated(0.47) benign(0.002) TCGA-BW-A5NO-01 12 10978718 10978718 C T TAS2R10 Missense_Mutation p.A51T 0.37 deleterious(0) probably_damaging(0.989) TCGA-BW-A5NO-01 12 109885205 109885205 A G MYO1H 3'UTR 0.60 TCGA-BW-A5NO-01 12 113444385 113444385 G T OAS2 Missense_Mutation p.V546L 0.35 deleterious(0.01) benign(0.251) TCGA-BW-A5NO-01 12 115118767 115118767 C A TBX3 Missense_Mutation p.A192S 0.38 tolerated(0.24) probably_damaging(1) TCGA-BW-A5NO-01 12 120222843 120222843 G T CIT Missense_Mutation p.P441H 0.05 deleterious(0) benign(0.4) TCGA-BW-A5NO-01 12 15813579 15813579 T C EPS8 Silent p.K302K 0.20 TCGA-BW-A5NO-01 12 18747452 18747452 C T PIK3C2G Missense_Mutation p.L1305F 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-BW-A5NO-01 12 25705915 25705915 T C IFLTD1 5'UTR 0.06 TCGA-BW-A5NO-01 12 83290361 83290361 G A TMTC2 Silent p.R473R 0.13 TCGA-BW-A5NO-01 13 39266353 39266353 C A FREM2 Silent p.T1624T 0.20 TCGA-BW-A5NO-01 14 100361092 100361092 G T EML1 Missense_Mutation p.W244L 0.26 deleterious(0) possibly_damaging(0.475) TCGA-BW-A5NO-01 14 20344515 20344515 T G OR4K2 Missense_Mutation p.V30G 0.12 tolerated(0.06) benign(0.097) TCGA-BW-A5NO-01 14 70237779 70237779 A T SRSF5 Missense_Mutation p.N170Y 0.49 tolerated(0.06) possibly_damaging(0.733) TCGA-BW-A5NO-01 14 92436115 92436115 G C TRIP11 Missense_Mutation p.L1948V 0.04 deleterious(0.02) probably_damaging(0.972) TCGA-BW-A5NO-01 15 49170689 49170689 G C EID1 Missense_Mutation p.E106Q 0.07 tolerated(0.33) possibly_damaging(0.603) TCGA-BW-A5NO-01 16 84801856 84801856 G A USP10 Silent p.T630T 0.30 TCGA-BW-A5NO-01 17 10296222 10296222 G C MYH8 Missense_Mutation p.Q1797E 0.10 deleterious(0.03) possibly_damaging(0.73) TCGA-BW-A5NO-01 17 27421037 27421037 A T MYO18A Missense_Mutation p.D1594E 0.47 tolerated(0.49) benign(0.181) TCGA-BW-A5NO-01 17 30376212 30376212 C T LRRC37B Silent p.T825T 0.59 TCGA-BW-A5NO-01 17 33770885 33770885 C T SLFN13 Missense_Mutation p.S374N 0.27 tolerated(0.16) benign(0.01) TCGA-BW-A5NO-01 17 35836972 35836972 A G TADA2A Missense_Mutation p.N406S 0.16 tolerated(0.78) benign(0.011) TCGA-BW-A5NO-01 17 45008537 45008537 G A GOSR2 Missense_Mutation p.S56N 0.41 tolerated(0.33) benign(0.017) TCGA-BW-A5NO-01 17 68175497 68175497 T G KCNJ2 3'UTR 0.35 TCGA-BW-A5NO-01 17 7577142 7577142 C T TP53 Missense_Mutation p.G266R 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-BW-A5NO-01 17 78318789 78318789 T C RNF213 Silent p.F2218F 0.04 TCGA-BW-A5NO-01 18 21089229 21089229 A G C18orf8 Missense_Mutation p.I132V 0.14 tolerated(0.78) benign(0.001) TCGA-BW-A5NO-01 18 73139543 73139543 G A SMIM21 5'UTR 0.28 TCGA-BW-A5NO-01 19 10791742 10791742 C T ILF3 Silent p.G335G 0.32 TCGA-BW-A5NO-01 19 14952528 14952528 G T OR7A10 Missense_Mutation p.H54Q 0.07 deleterious_low_confidence(0.02) benign(0.249) TCGA-BW-A5NO-01 19 17068704 17068704 A G CPAMD8 Silent p.T792T 0.25 TCGA-BW-A5NO-01 19 17160925 17160925 G C HAUS8 Missense_Mutation p.Q331E 0.40 deleterious(0) probably_damaging(0.998) TCGA-BW-A5NO-01 19 44661594 44661594 G A ZNF234 Silent p.Q475Q 0.06 TCGA-BW-A5NO-01 19 53793408 53793408 C T BIRC8 Missense_Mutation p.G74R 0.41 deleterious(0.03) probably_damaging(0.972) TCGA-BW-A5NO-01 19 55085353 55085353 C T LILRA2 Missense_Mutation p.P3L 0.24 tolerated(0.08) benign(0.21) TCGA-BW-A5NO-01 19 6904085 6904085 C G EMR1 Missense_Mutation p.P281A 0.10 tolerated(0.14) benign(0.422) TCGA-BW-A5NO-01 19 9018487 9018487 G A MUC16 Missense_Mutation p.R12563C 0.06 probably_damaging(0.923) TCGA-BW-A5NO-01 19 9038131 9038131 C A MUC16 Missense_Mutation p.V12049L 0.07 benign(0.072) TCGA-BW-A5NO-01 1 110038869 110038871 AAT - CYB561D1 In_Frame_Del p.M249del 0.32 TCGA-BW-A5NO-01 1 12069707 12069707 C G MFN2 Missense_Mutation p.L710V 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-BW-A5NO-01 1 150900277 150900277 G A SETDB1 Silent p.V29V 0.08 TCGA-BW-A5NO-01 1 152283189 152283189 A G FLG Silent p.S1391S 0.33 TCGA-BW-A5NO-01 1 152636942 152636942 G T LCE2D 3'UTR 0.44 TCGA-BW-A5NO-01 1 154931211 154931211 A T PYGO2 3'UTR 0.40 TCGA-BW-A5NO-01 1 183942845 183942845 G A COLGALT2 Missense_Mutation p.L178F 0.10 deleterious(0) possibly_damaging(0.903) TCGA-BW-A5NO-01 1 20474797 20474797 A G PLA2G2F Missense_Mutation p.Y180C 0.33 tolerated(0.06) probably_damaging(0.989) TCGA-BW-A5NO-01 1 207791472 207791472 C A CR1 Missense_Mutation p.L2316I 0.40 tolerated(0.42) possibly_damaging(0.594) TCGA-BW-A5NO-01 1 207870921 207870921 G A CR1L Silent p.Q312Q 0.14 TCGA-BW-A5NO-01 1 220307815 220307816 TT - IARS2 Frame_Shift_Del p.L637Nfs*12 0.31 TCGA-BW-A5NO-01 1 35857909 35857909 C A ZMYM4 Missense_Mutation p.A895D 0.42 tolerated(0.13) benign(0.058) TCGA-BW-A5NO-01 1 39340262 39340262 A G GJA9 Silent p.N503N 0.44 TCGA-BW-A5NO-01 1 57173335 57173335 C A PRKAA2 Silent p.T536T 0.25 TCGA-BW-A5NO-01 1 60505838 60505838 G T C1orf87 Missense_Mutation p.S166R 0.49 tolerated(1) benign(0) TCGA-BW-A5NO-01 1 62267337 62267337 C G INADL Missense_Mutation p.T482S 0.18 tolerated(0.64) benign(0.002) TCGA-BW-A5NO-01 1 65139104 65139104 A G CACHD1 Missense_Mutation p.D844G 0.10 deleterious(0.01) possibly_damaging(0.68) TCGA-BW-A5NO-01 20 35684006 35684006 C T RBL1 Missense_Mutation p.E473K 0.12 deleterious(0.01) benign(0.167) TCGA-BW-A5NO-01 20 55012476 55012476 A G CASS4 Missense_Mutation p.Y98C 0.40 deleterious(0.04) benign(0.159) TCGA-BW-A5NO-01 21 42770846 42770846 G T MX2 Missense_Mutation p.G391V 0.09 deleterious(0.03) benign(0.002) TCGA-BW-A5NO-01 21 43523905 43523905 G T C21orf128 Silent p.R110R 0.09 TCGA-BW-A5NO-01 21 45811268 45811268 C T TRPM2 Silent p.T518T 0.12 TCGA-BW-A5NO-01 22 19207465 19207465 T A CLTCL1 Nonsense_Mutation p.R950* 0.35 TCGA-BW-A5NO-01 22 19839038 19839038 T C C22orf29 Silent p.V249V 0.47 TCGA-BW-A5NO-01 22 22664185 22664185 A C BMS1P20 RNA 0.04 TCGA-BW-A5NO-01 22 40030630 40030630 T A CACNA1I Missense_Mutation p.L214Q 0.43 deleterious(0) probably_damaging(0.952) TCGA-BW-A5NO-01 2 141055500 141055500 G T LRP1B Missense_Mutation p.P4282T 0.09 possibly_damaging(0.876) TCGA-BW-A5NO-01 2 150294299 150294299 G A LYPD6 Missense_Mutation p.R26Q 0.62 deleterious(0.02) possibly_damaging(0.742) TCGA-BW-A5NO-01 2 162276744 162276744 A T TBR1 Missense_Mutation p.K389I 0.55 deleterious(0) probably_damaging(0.98) TCGA-BW-A5NO-01 2 162807235 162807235 A T SLC4A10 Missense_Mutation p.L806F 0.19 tolerated(1) possibly_damaging(0.85) TCGA-BW-A5NO-01 2 168105466 168105466 C A XIRP2 Missense_Mutation p.H2522N 0.54 benign(0.081) TCGA-BW-A5NO-01 2 171262094 171262094 G A MYO3B Missense_Mutation p.R824K 0.06 tolerated(0.14) benign(0.06) TCGA-BW-A5NO-01 2 179404631 179404631 C T TTN Missense_Mutation p.V32721I 0.44 TCGA-BW-A5NO-01 2 179596523 179596523 G A TTN Silent p.S5693S 0.20 TCGA-BW-A5NO-01 2 179718305 179718305 C T CCDC141 Missense_Mutation p.G1036E 0.19 deleterious(0) probably_damaging(0.954) TCGA-BW-A5NO-01 2 201437093 201437093 G A SGOL2 Missense_Mutation p.R675K 0.09 tolerated(0.96) benign(0.003) TCGA-BW-A5NO-01 2 207527925 207527925 A G DYTN Silent p.N445N 0.26 TCGA-BW-A5NO-01 2 214727353 214727353 G T SPAG16 Splice_Site p.X405_splice 0.14 TCGA-BW-A5NO-01 2 26597995 26597995 C T EPT1 Silent p.L221L 0.05 TCGA-BW-A5NO-01 2 36775881 36775881 G A CRIM1 3'UTR 0.25 TCGA-BW-A5NO-01 2 73456048 73456048 G A PRADC1 Silent p.H107H 0.35 TCGA-BW-A5NO-01 3 115805264 115805264 G C LSAMP Missense_Mutation p.Q99E 0.39 tolerated(0.09) possibly_damaging(0.45) TCGA-BW-A5NO-01 3 119306692 119306692 C A ADPRH Silent p.L347L 0.51 TCGA-BW-A5NO-01 3 151475327 151475327 G A AADACL2 Missense_Mutation p.R384H 0.11 tolerated(0.33) benign(0.001) TCGA-BW-A5NO-01 3 169485800 169485800 G C ACTRT3 Missense_Mutation p.A180G 0.04 deleterious(0.03) benign(0.007) TCGA-BW-A5NO-01 3 172162985 172162985 G T GHSR Missense_Mutation p.S356Y 0.16 tolerated(0.1) benign(0.405) TCGA-BW-A5NO-01 3 180706002 180706002 C A DNAJC19 Missense_Mutation p.A7S 0.11 tolerated(0.06) possibly_damaging(0.516) TCGA-BW-A5NO-01 3 39156203 39156203 A G TTC21A Missense_Mutation p.D229G 0.04 deleterious(0) possibly_damaging(0.899) TCGA-BW-A5NO-01 3 51273797 51273797 A G DOCK3 Missense_Mutation p.T647A 0.03 tolerated(0.6) probably_damaging(0.993) TCGA-BW-A5NO-01 3 56183107 56183107 G A ERC2 Silent p.I401I 0.35 TCGA-BW-A5NO-01 3 73651611 73651611 T C PDZRN3 Missense_Mutation p.D271G 0.15 tolerated(0.2) possibly_damaging(0.626) TCGA-BW-A5NO-01 3 9712791 9712791 A - MTMR14 Frame_Shift_Del p.Y205Sfs*10 0.27 TCGA-BW-A5NO-01 4 104065713 104065713 C T CENPE Silent p.Q1640Q 0.56 TCGA-BW-A5NO-01 4 115754838 115754838 C G NDST4 Missense_Mutation p.D774H 0.08 deleterious(0.01) possibly_damaging(0.891) TCGA-BW-A5NO-01 4 145567924 145567924 G A HHIP Missense_Mutation p.G33R 0.42 deleterious_low_confidence(0) benign(0.362) TCGA-BW-A5NO-01 4 152498952 152498952 A T FAM160A1 Silent p.G152G 0.27 TCGA-BW-A5NO-01 4 160262813 160262813 A T RAPGEF2 Missense_Mutation p.S717C 0.25 deleterious(0) probably_damaging(0.992) TCGA-BW-A5NO-01 4 183650121 183650121 G A TENM3 Missense_Mutation p.G791E 0.05 deleterious(0) probably_damaging(0.972) TCGA-BW-A5NO-01 4 39439384 39439384 T C KLB Silent p.T458T 0.08 TCGA-BW-A5NO-01 4 54256750 54256750 G C FIP1L1 Missense_Mutation p.E154Q 0.19 tolerated(0.06) probably_damaging(0.961) TCGA-BW-A5NO-01 4 57344756 57344756 A G SRP72 Splice_Site p.X256_splice 0.41 TCGA-BW-A5NO-01 4 68497490 68497490 C A UBA6 Splice_Site p.X732_splice 0.33 TCGA-BW-A5NO-01 5 1278821 1278821 C A TERT Missense_Mutation p.V741L 0.13 tolerated(0.1) benign(0.014) TCGA-BW-A5NO-01 5 13871081 13871081 G A DNAH5 Missense_Mutation p.T1210I 0.43 possibly_damaging(0.507) TCGA-BW-A5NO-01 5 159776297 159776297 C T C1QTNF2 Missense_Mutation p.E291K 0.09 tolerated(0.18) probably_damaging(0.912) TCGA-BW-A5NO-01 5 26902658 26902658 C A CDH9 Nonsense_Mutation p.E394* 0.55 TCGA-BW-A5NO-01 5 49699137 49699137 T A EMB Missense_Mutation p.E251V 0.32 deleterious(0.02) possibly_damaging(0.841) TCGA-BW-A5NO-01 5 66255032 66255032 G C MAST4 Intron 0.06 TCGA-BW-A5NO-01 5 7867391 7867391 T A FASTKD3 Missense_Mutation p.K269I 0.13 deleterious(0.02) benign(0.284) TCGA-BW-A5NO-01 5 81548458 81548458 G T ATG10 Missense_Mutation p.K177N 0.20 tolerated(0.1) benign(0.028) TCGA-BW-A5NO-01 6 10924837 10924837 C T SYCP2L Missense_Mutation p.S394L 0.31 tolerated(0.48) benign(0.014) TCGA-BW-A5NO-01 6 137522034 137522034 A G IFNGR1 Missense_Mutation p.I282T 0.06 tolerated(0.45) benign(0.023) TCGA-BW-A5NO-01 6 26158526 26158526 C G HIST1H2BD Nonsense_Mutation p.Y43* 0.13 TCGA-BW-A5NO-01 6 33652419 33652419 C A ITPR3 Missense_Mutation p.N1697K 0.29 tolerated(0.21) benign(0.004) TCGA-BW-A5NO-01 6 38565731 38565731 A G BTBD9 Missense_Mutation p.F47S 0.14 deleterious(0) unknown(0) TCGA-BW-A5NO-01 6 43023661 43023661 C T MRPL2 Missense_Mutation p.R202Q 0.08 tolerated(0.39) possibly_damaging(0.738) TCGA-BW-A5NO-01 6 76024440 76024440 C A FILIP1 Nonsense_Mutation p.E370* 0.23 TCGA-BW-A5NO-01 6 96661651 96661651 A G FUT9 3'UTR 0.52 TCGA-BW-A5NO-01 7 127670230 127670230 C T LRRC4 Missense_Mutation p.R155H 0.54 tolerated(0.06) probably_damaging(0.995) TCGA-BW-A5NO-01 7 140125861 140125861 G T RAB19 Missense_Mutation p.G189W 0.25 deleterious(0.01) benign(0.438) TCGA-BW-A5NO-01 7 140301984 140301984 C A DENND2A Nonsense_Mutation p.E72* 0.38 TCGA-BW-A5NO-01 7 29980369 29980369 G C SCRN1 Missense_Mutation p.S243C 0.22 deleterious(0.02) probably_damaging(0.914) TCGA-BW-A5NO-01 7 64864874 64864874 A G ZNF92 3'UTR 0.33 TCGA-BW-A5NO-01 7 84727158 84727158 A G SEMA3D Missense_Mutation p.L92P 0.09 deleterious(0.02) probably_damaging(0.983) TCGA-BW-A5NO-01 7 95115314 95115314 T C ASB4 Missense_Mutation p.S11P 0.43 tolerated(0.14) benign(0) TCGA-BW-A5NO-01 8 105509410 105509410 T G LRP12 Missense_Mutation p.H457P 0.12 deleterious(0.04) probably_damaging(0.971) TCGA-BW-A5NO-01 8 118175765 118175765 G A SLC30A8 Missense_Mutation p.M275I 0.53 deleterious(0) possibly_damaging(0.826) TCGA-BW-A5NO-01 8 118175766 118175766 G T SLC30A8 Nonsense_Mutation p.E276* 0.53 TCGA-BW-A5NO-01 8 19809442 19809442 T A LPL Missense_Mutation p.F138I 0.08 deleterious(0.02) probably_damaging(1) TCGA-BW-A5NO-01 8 24256455 24256455 A G ADAMDEC1 Missense_Mutation p.I277M 0.80 deleterious(0.01) probably_damaging(1) TCGA-BW-A5NO-01 8 37729417 37729417 T C RAB11FIP1 Missense_Mutation p.D968G 0.05 deleterious(0) possibly_damaging(0.856) TCGA-BW-A5NO-01 8 6357499 6357499 A G ANGPT2 3'UTR 0.82 TCGA-BW-A5NO-01 8 73958446 73958446 T G TERF1 3'UTR 0.46 TCGA-BW-A5NO-01 8 85785541 85785541 C G RALYL Silent p.T211T 0.09 TCGA-BW-A5NO-01 8 92201773 92201773 A G LRRC69 Silent p.E225E 0.26 TCGA-BW-A5NO-01 9 105767486 105767486 A T CYLC2 Missense_Mutation p.K191N 0.26 tolerated(0.06) unknown(0) TCGA-BW-A5NO-01 9 128728271 128728271 A G PBX3 3'UTR 0.30 TCGA-BW-A5NO-01 9 130073954 130073954 G A GARNL3 Missense_Mutation p.V87M 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-BW-A5NO-01 9 131764256 131764256 G A NUP188 Splice_Site p.X1379_splice 0.14 TCGA-BW-A5NO-01 9 21227893 21227893 C T IFNA17 Missense_Mutation p.E94K 0.37 tolerated(0.6) benign(0.001) TCGA-BW-A5NO-01 9 40774978 40774978 C A ZNF658 Missense_Mutation p.W99C 0.08 tolerated(0.29) possibly_damaging(0.737) TCGA-BW-A5NO-01 X 13733990 13733990 A G TRAPPC2 Intron 0.43 TCGA-BW-A5NO-01 X 151900290 151900290 G T MAGEA12 Missense_Mutation p.R171S 0.79 deleterious(0.04) benign(0.001) TCGA-BW-A5NO-01 X 34961245 34961245 G A FAM47B Silent p.K99K 0.51 TCGA-BW-A5NO-01 X 70824088 70824088 G A ACRC Missense_Mutation p.D321N 0.69 unknown(0) TCGA-BW-A5NO-01 X 83359655 83359655 T C RPS6KA6 Missense_Mutation p.D489G 0.89 deleterious(0) probably_damaging(0.991) TCGA-BW-A5NP-01 10 117059734 117059734 G A ATRNL1 Missense_Mutation p.G869D 0.35 deleterious(0) probably_damaging(0.935) TCGA-BW-A5NP-01 10 54076473 54076473 G A DKK1 Missense_Mutation p.R236H 0.04 deleterious(0) probably_damaging(0.999) TCGA-BW-A5NP-01 10 5683746 5683746 G A ASB13 Silent p.F232F 0.63 TCGA-BW-A5NP-01 10 75673403 75673403 C T PLAU Silent p.N189N 0.52 TCGA-BW-A5NP-01 10 85902445 85902445 G A GHITM Missense_Mutation p.R55H 0.06 tolerated(0.08) benign(0.036) TCGA-BW-A5NP-01 10 88730161 88730161 G A ADIRF Intron 0.71 TCGA-BW-A5NP-01 11 100996842 100996842 A C PGR Nonsense_Mutation p.L562* 0.18 TCGA-BW-A5NP-01 11 123900967 123900967 T - OR10G8 Frame_Shift_Del p.I213Kfs*47 0.09 TCGA-BW-A5NP-01 11 128680417 128680417 G A FLI1 Missense_Mutation p.S298N 0.28 tolerated(0.69) benign(0.008) TCGA-BW-A5NP-01 11 47727469 47727469 C T AGBL2 Nonsense_Mutation p.W78* 0.51 TCGA-BW-A5NP-01 11 61563319 61563319 C T FEN1 Silent p.S162S 0.32 TCGA-BW-A5NP-01 11 66050237 66050237 T C CNIH2 Missense_Mutation p.C62R 0.15 tolerated(0.45) benign(0.392) TCGA-BW-A5NP-01 11 66050238 66050238 G T CNIH2 Missense_Mutation p.C62F 0.15 tolerated(0.51) benign(0.008) TCGA-BW-A5NP-01 11 66050239 66050239 C T CNIH2 Silent p.C62C 0.15 TCGA-BW-A5NP-01 11 89935537 89935537 C T CHORDC1 3'UTR 0.33 TCGA-BW-A5NP-01 12 123104994 123104994 G T KNTC1 Intron 0.32 TCGA-BW-A5NP-01 12 123104995 123104995 A T KNTC1 Intron 0.34 TCGA-BW-A5NP-01 12 40959594 40959594 T C MUC19 3'UTR 0.30 TCGA-BW-A5NP-01 12 48389497 48389498 - CACCAGGTT COL2A1 In_Frame_Ins p.E232_G234dup 0.09 TCGA-BW-A5NP-01 12 50358790 50358790 C T AQP5 Missense_Mutation p.P210S 0.61 deleterious(0.01) benign(0.121) TCGA-BW-A5NP-01 12 71314290 71314290 G C PTPRR 5'UTR 0.44 TCGA-BW-A5NP-01 13 28964106 28964106 G C FLT1 Missense_Mutation p.T599R 0.10 tolerated(0.05) probably_damaging(0.956) TCGA-BW-A5NP-01 13 78477636 78477636 A T EDNRB Missense_Mutation p.I287N 0.44 deleterious(0) probably_damaging(0.964) TCGA-BW-A5NP-01 14 23079868 23079868 G C ABHD4 3'UTR 0.10 TCGA-BW-A5NP-01 15 102252128 102252128 G A TARSL2 Missense_Mutation p.P256L 0.04 deleterious(0) probably_damaging(0.929) TCGA-BW-A5NP-01 15 42054412 42054412 G A MGA Silent p.K2532K 0.55 TCGA-BW-A5NP-01 15 45387780 45387780 C T DUOX2 Missense_Mutation p.G1365E 0.44 deleterious(0) probably_damaging(0.978) TCGA-BW-A5NP-01 15 65551593 65551593 G A PARP16 3'UTR 0.18 TCGA-BW-A5NP-01 15 77025616 77025616 C T SCAPER Missense_Mutation p.R659H 0.41 deleterious(0) probably_damaging(1) TCGA-BW-A5NP-01 15 99454654 99454654 G A IGF1R Missense_Mutation p.V525I 0.41 deleterious(0) possibly_damaging(0.483) TCGA-BW-A5NP-01 16 28507978 28507978 C T APOBR Missense_Mutation p.A539V 0.98 tolerated(0.18) benign(0.001) TCGA-BW-A5NP-01 16 4847421 4847421 C T ROGDI 3'UTR 0.83 TCGA-BW-A5NP-01 16 76482022 76482022 G C CNTNAP4 Missense_Mutation p.D193H 0.91 deleterious(0.02) possibly_damaging(0.81) TCGA-BW-A5NP-01 17 18055202 18055202 T A MYO15A Missense_Mutation p.H2610Q 0.27 unknown(0) TCGA-BW-A5NP-01 17 41836014 41836014 A T SOST Missense_Mutation p.D32E 0.33 deleterious(0) probably_damaging(0.954) TCGA-BW-A5NP-01 17 73729759 73729759 G A ITGB4 Missense_Mutation p.G548E 0.12 deleterious(0) probably_damaging(0.955) TCGA-BW-A5NP-01 18 32428268 32428268 A G DTNA Missense_Mutation p.E365G 0.93 tolerated(0.12) benign(0.138) TCGA-BW-A5NP-01 19 1510383 1510383 C T ADAMTSL5 Missense_Mutation p.R79H 0.31 deleterious(0.01) benign(0.299) TCGA-BW-A5NP-01 19 42839240 42839240 G A MEGF8 Silent p.L204L 0.14 TCGA-BW-A5NP-01 19 53432442 53432442 G A ZNF321P Missense_Mutation p.T139I 0.49 deleterious(0.04) benign(0.16) TCGA-BW-A5NP-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.10 deleterious(0.01) benign(0.045) TCGA-BW-A5NP-01 1 154127337 154127337 G A NUP210L Nonsense_Mutation p.Q62* 0.07 TCGA-BW-A5NP-01 1 156287253 156287253 A T CCT3 Missense_Mutation p.I282N 0.12 deleterious(0) probably_damaging(0.985) TCGA-BW-A5NP-01 1 176759013 176759013 G A PAPPA2 Missense_Mutation p.C1595Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-BW-A5NP-01 1 185067215 185067215 G T RNF2 Missense_Mutation p.G159V 0.13 tolerated(0.59) possibly_damaging(0.598) TCGA-BW-A5NP-01 1 197297620 197297620 G T CRB1 Missense_Mutation p.D47Y 0.04 tolerated(0.07) benign(0.002) TCGA-BW-A5NP-01 1 201827625 201827625 A C IPO9 Silent p.A424A 0.29 TCGA-BW-A5NP-01 1 205238236 205238236 G A TMCC2 Silent p.Q302Q 0.17 TCGA-BW-A5NP-01 1 216680496 216680496 C T ESRRG Missense_Mutation p.V400I 0.31 tolerated(0.05) benign(0.287) TCGA-BW-A5NP-01 1 227192740 227192740 G A CDC42BPA Missense_Mutation p.P1609S 0.03 deleterious(0.05) benign(0.015) TCGA-BW-A5NP-01 1 230468774 230468774 G A PGBD5 Silent p.C294C 0.60 TCGA-BW-A5NP-01 21 41427743 41427743 C A DSCAM Silent p.T1648T 0.54 TCGA-BW-A5NP-01 2 107459569 107459569 G T ST6GAL2 Missense_Mutation p.H289N 0.37 benign(0.068) TCGA-BW-A5NP-01 2 128477498 128477498 G T WDR33 Missense_Mutation p.P701T 0.38 deleterious_low_confidence(0.02) unknown(0) TCGA-BW-A5NP-01 2 179441674 179441674 G T TTN Missense_Mutation p.P23130T 0.30 TCGA-BW-A5NP-01 2 179485580 179485580 A G TTN Missense_Mutation p.Y15253H 0.20 TCGA-BW-A5NP-01 2 215862522 215862522 C A ABCA12 Missense_Mutation p.S1064I 0.37 deleterious(0.04) benign(0.247) TCGA-BW-A5NP-01 2 220081465 220081465 T C ABCB6 Silent p.P259P 0.57 TCGA-BW-A5NP-01 2 24535152 24535152 T A ITSN2 Missense_Mutation p.Q94L 0.20 tolerated(0.2) benign(0.055) TCGA-BW-A5NP-01 2 30863264 30863264 G A LCLAT1 Missense_Mutation p.V342I 0.45 tolerated(0.2) benign(0.119) TCGA-BW-A5NP-01 2 46707702 46707702 G T TMEM247 Silent p.L92L 0.55 TCGA-BW-A5NP-01 2 54753649 54753649 A T SPTBN1 Missense_Mutation p.N32Y 0.48 tolerated(0.29) probably_damaging(0.982) TCGA-BW-A5NP-01 2 99812269 99812269 G A MRPL30 3'UTR 0.56 TCGA-BW-A5NP-01 3 108076864 108076864 C T HHLA2 Nonsense_Mutation p.R287* 0.53 TCGA-BW-A5NP-01 3 109026919 109026919 G T DPPA2 Silent p.S206S 0.04 TCGA-BW-A5NP-01 3 111312778 111312778 C A ZBED2 Missense_Mutation p.V91F 0.56 tolerated(0.55) benign(0.046) TCGA-BW-A5NP-01 3 113375328 113375328 C A KIAA2018 Missense_Mutation p.C1734F 0.11 probably_damaging(0.999) TCGA-BW-A5NP-01 3 123033087 123033087 C T ADCY5 Missense_Mutation p.V813I 0.32 tolerated(0.74) benign(0.003) TCGA-BW-A5NP-01 3 142840620 142840620 C T CHST2 Missense_Mutation p.P321L 0.71 deleterious(0.01) probably_damaging(0.999) TCGA-BW-A5NP-01 3 14964028 14964028 G A FGD5 Silent p.R1260R 0.16 TCGA-BW-A5NP-01 3 155571528 155571528 T C SLC33A1 Missense_Mutation p.I87V 0.59 tolerated(0.16) benign(0.173) TCGA-BW-A5NP-01 3 174951769 174951769 G T NAALADL2 Missense_Mutation p.K198N 0.23 deleterious(0.01) benign(0.209) TCGA-BW-A5NP-01 3 180361989 180361989 G A CCDC39 Silent p.S528S 0.33 TCGA-BW-A5NP-01 3 37574884 37574884 G A ITGA9 Missense_Mutation p.G485R 0.42 tolerated(0.08) probably_damaging(0.99) TCGA-BW-A5NP-01 3 89456488 89456488 T A EPHA3 Missense_Mutation p.L555H 0.52 deleterious(0.02) probably_damaging(0.947) TCGA-BW-A5NP-01 3 9594219 9594219 C T LHFPL4 Missense_Mutation p.D49N 0.05 deleterious(0.03) probably_damaging(0.999) TCGA-BW-A5NP-01 4 123193335 123193335 C G KIAA1109 Missense_Mutation p.P2741A 0.33 benign(0.001) TCGA-BW-A5NP-01 4 156136558 156136558 A T NPY2R 3'UTR 0.09 TCGA-BW-A5NP-01 4 175439184 175439184 A T HPGD Missense_Mutation p.L88M 0.08 tolerated(0.14) probably_damaging(0.967) TCGA-BW-A5NP-01 4 68691558 68691558 G A TMPRSS11D Silent p.V329V 0.23 TCGA-BW-A5NP-01 4 77065333 77065333 T C NUP54 Silent p.G88G 0.04 TCGA-BW-A5NP-01 4 90816255 90816255 C A MMRN1 Missense_Mutation p.P45T 0.63 deleterious_low_confidence(0.05) benign(0.169) TCGA-BW-A5NP-01 4 90816256 90816256 C A MMRN1 Missense_Mutation p.P45H 0.63 deleterious_low_confidence(0.04) possibly_damaging(0.717) TCGA-BW-A5NP-01 5 114603448 114603448 C A CCDC112 3'UTR 0.21 TCGA-BW-A5NP-01 5 114603460 114603460 C A CCDC112 3'UTR 0.23 TCGA-BW-A5NP-01 5 157106849 157106849 G T C5orf52 Missense_Mutation p.V108L 0.41 tolerated(0.27) possibly_damaging(0.621) TCGA-BW-A5NP-01 5 176859237 176859237 G C GRK6 Missense_Mutation p.E89Q 0.12 deleterious(0.03) benign(0.053) TCGA-BW-A5NP-01 5 90000211 90000211 G A GPR98 Silent p.S2764S 0.06 TCGA-BW-A5NP-01 6 17764996 17764996 C T KIF13A Missense_Mutation p.R1588H 0.36 tolerated_low_confidence(0.07) probably_damaging(0.932) TCGA-BW-A5NP-01 6 30638843 30638843 T G DHX16 Missense_Mutation p.E139A 0.09 tolerated(0.37) unknown(0) TCGA-BW-A5NP-01 6 30672574 30672574 G T MDC1 Missense_Mutation p.D1462E 0.33 tolerated(0.14) benign(0.083) TCGA-BW-A5NP-01 6 31122536 31122536 C A CCHCR1 Missense_Mutation p.A180S 0.16 deleterious(0.01) probably_damaging(0.928) TCGA-BW-A5NP-01 6 44221514 44221514 T C HSP90AB1 3'UTR 0.12 TCGA-BW-A5NP-01 6 7580848 7580848 C T DSP Silent p.T1475T 0.35 TCGA-BW-A5NP-01 7 107423494 107423494 G A SLC26A3 Silent p.F388F 0.39 TCGA-BW-A5NP-01 7 141373871 141373872 - TC KIAA1147 Frame_Shift_Ins p.M226Rfs*2 0.30 TCGA-BW-A5NP-01 7 1594988 1594988 C T TMEM184A Missense_Mutation p.A45T 0.54 tolerated(0.43) benign(0.003) TCGA-BW-A5NP-01 7 22532994 22532994 G A STEAP1B Silent p.Y182Y 0.10 TCGA-BW-A5NP-01 7 48567919 48567919 G A ABCA13 Missense_Mutation p.A4778T 0.18 benign(0.39) TCGA-BW-A5NP-01 8 105510064 105510064 C T LRP12 Missense_Mutation p.C239Y 0.16 deleterious(0) probably_damaging(0.997) TCGA-BW-A5NP-01 8 131181257 131181257 A C ASAP1 Missense_Mutation p.L268R 0.34 deleterious(0) probably_damaging(0.979) TCGA-BW-A5NP-01 8 145095469 145095469 T C SPATC1 Missense_Mutation p.V256A 0.03 tolerated(0.33) benign(0.016) TCGA-BW-A5NP-01 8 42865516 42865516 C T HOOK3 Nonsense_Mutation p.R603* 0.03 TCGA-BW-A5NP-01 9 103092435 103092435 C G TEX10 Missense_Mutation p.V423L 0.45 tolerated(0.25) benign(0) TCGA-BW-A5NP-01 9 136037820 136037820 C G GBGT1 5'UTR 0.46 TCGA-BW-A5NP-01 X 129147853 129147853 A G BCORL1 Missense_Mutation p.T369A 0.53 unknown(0) TCGA-BW-A5NP-01 X 129162763 129162763 A T BCORL1 Missense_Mutation p.E1411V 0.52 probably_damaging(0.974) TCGA-BW-A5NP-01 X 134480993 134480993 G A ZNF449 5'UTR 0.09 TCGA-BW-A5NQ-01 10 43312791 43312791 A C BMS1 Missense_Mutation p.K810T 0.24 tolerated(0.16) benign(0.035) TCGA-BW-A5NQ-01 10 89621495 89621495 A C KLLN 3'UTR 0.46 TCGA-BW-A5NQ-01 11 107799388 107799388 C T RAB39A Missense_Mutation p.R32C 0.38 tolerated(0.08) benign(0.002) TCGA-BW-A5NQ-01 11 1155691 1155691 G T MUC5AC Nonsense_Mutation p.E127* 0.38 TCGA-BW-A5NQ-01 11 116693445 116693445 T C APOA4 Missense_Mutation p.S36G 0.32 deleterious(0.01) probably_damaging(0.913) TCGA-BW-A5NQ-01 11 18955438 18955438 C A MRGPRX1 Silent p.A298A 0.24 TCGA-BW-A5NQ-01 11 20699518 20699518 C A NELL1 Silent p.I32I 0.33 TCGA-BW-A5NQ-01 11 55681596 55681596 C T OR5W2 Missense_Mutation p.D155N 0.42 tolerated(0.19) benign(0.018) TCGA-BW-A5NQ-01 11 7064361 7064361 C G NLRP14 Silent p.V368V 0.14 TCGA-BW-A5NQ-01 11 94861677 94861677 C G ENDOD1 Missense_Mutation p.P146R 0.32 deleterious(0) probably_damaging(0.992) TCGA-BW-A5NQ-01 12 118639243 118639243 G A TAOK3 Missense_Mutation p.P282L 0.41 tolerated(0.1) benign(0.104) TCGA-BW-A5NQ-01 12 1993990 1993990 C A CACNA2D4 Missense_Mutation p.G406C 0.25 deleterious(0) probably_damaging(1) TCGA-BW-A5NQ-01 12 56563945 56563945 C T SMARCC2 Missense_Mutation p.E768K 0.08 tolerated(0.22) benign(0.292) TCGA-BW-A5NQ-01 12 7074826 7074826 G A PHB2 3'UTR 0.32 TCGA-BW-A5NQ-01 12 70986132 70986132 T C PTPRB Silent p.R570R 0.12 TCGA-BW-A5NQ-01 13 111932983 111932983 G A ARHGEF7 Missense_Mutation p.G583R 0.25 tolerated(0.27) benign(0.066) TCGA-BW-A5NQ-01 13 35692392 35692392 C T NBEA Nonsense_Mutation p.Q704* 0.20 TCGA-BW-A5NQ-01 13 35692394 35692394 G C NBEA Missense_Mutation p.Q704H 0.20 tolerated(0.07) probably_damaging(0.998) TCGA-BW-A5NQ-01 13 35734090 35734090 T G NBEA Missense_Mutation p.I1261S 0.35 tolerated_low_confidence(0.12) benign(0.001) TCGA-BW-A5NQ-01 13 44734968 44734968 A C SMIM2 Missense_Mutation p.D8E 0.33 tolerated_low_confidence(0.28) possibly_damaging(0.631) TCGA-BW-A5NQ-01 14 102792471 102792471 C T ZNF839 Silent p.A146A 0.24 TCGA-BW-A5NQ-01 14 106307358 106307358 G A IGHD Silent p.S227S 0.38 TCGA-BW-A5NQ-01 14 21216504 21216504 C T EDDM3A 3'UTR 0.36 TCGA-BW-A5NQ-01 14 21487891 21487891 G T NDRG2 Missense_Mutation p.S208Y 0.31 tolerated(0.12) benign(0.239) TCGA-BW-A5NQ-01 14 21487892 21487892 A G NDRG2 Missense_Mutation p.S208P 0.31 tolerated(0.22) probably_damaging(0.958) TCGA-BW-A5NQ-01 14 64554464 64554464 A C SYNE2 Missense_Mutation p.I3854L 0.29 probably_damaging(0.995) TCGA-BW-A5NQ-01 14 69259685 69259685 G A ZFP36L1 5'UTR 0.20 TCGA-BW-A5NQ-01 14 89206879 89206879 C T EML5 Missense_Mutation p.R188Q 0.28 deleterious(0.01) possibly_damaging(0.884) TCGA-BW-A5NQ-01 15 23812394 23812394 G T MKRN3 Nonsense_Mutation p.E489* 0.32 TCGA-BW-A5NQ-01 15 51756896 51756896 A C DMXL2 Missense_Mutation p.L2595R 0.22 deleterious(0) probably_damaging(0.937) TCGA-BW-A5NQ-01 15 77471864 77471864 T C PEAK1 Missense_Mutation p.D802G 0.22 deleterious(0.02) benign(0.005) TCGA-BW-A5NQ-01 15 79382797 79382799 AGG - RASGRF1 In_Frame_Del p.L15del 0.19 TCGA-BW-A5NQ-01 15 89744850 89744850 T G ABHD2 3'UTR 0.22 TCGA-BW-A5NQ-01 16 1384728 1384728 C A BAIAP3 Silent p.I22I 0.46 TCGA-BW-A5NQ-01 17 12013730 12013731 - ATT MAP2K4 In_Frame_Ins p.I226dup 0.31 TCGA-BW-A5NQ-01 17 1549897 1549897 G A RILP Missense_Mutation p.R349W 0.28 deleterious(0.02) possibly_damaging(0.855) TCGA-BW-A5NQ-01 17 18205891 18205891 C T TOP3A Intron 0.24 TCGA-BW-A5NQ-01 17 26888556 26888556 A T PIGS Missense_Mutation p.V187D 0.37 tolerated(0.62) benign(0.014) TCGA-BW-A5NQ-01 17 39405942 39405942 G A KRTAP9-4 5'UTR 0.18 TCGA-BW-A5NQ-01 17 44410006 44410006 T G LRRC37A Missense_Mutation p.L1598R 0.08 deleterious(0) benign(0.132) TCGA-BW-A5NQ-01 17 60038954 60038954 G T MED13 Missense_Mutation p.P1751T 0.38 deleterious(0.04) probably_damaging(0.999) TCGA-BW-A5NQ-01 17 73643554 73643554 C T SMIM6 Missense_Mutation p.T33I 0.06 tolerated(0.34) benign(0.001) TCGA-BW-A5NQ-01 17 7578275 7578275 G A TP53 Nonsense_Mutation p.Q192* 0.40 TCGA-BW-A5NQ-01 18 23854650 23854650 C T TAF4B Silent p.V207V 0.17 TCGA-BW-A5NQ-01 18 2539040 2539040 G A METTL4 Nonsense_Mutation p.Q460* 0.10 TCGA-BW-A5NQ-01 18 6958645 6958645 A G LAMA1 Silent p.L2599L 0.24 TCGA-BW-A5NQ-01 19 14024108 14024108 G A CC2D1A Missense_Mutation p.G169E 0.35 deleterious(0) probably_damaging(1) TCGA-BW-A5NQ-01 19 21299717 21299717 T G ZNF714 Missense_Mutation p.L83V 0.28 deleterious(0.04) probably_damaging(0.994) TCGA-BW-A5NQ-01 19 30311721 30311721 G C CCNE1 Missense_Mutation p.G192A 0.24 deleterious(0) probably_damaging(1) TCGA-BW-A5NQ-01 19 34302696 34302696 G T KCTD15 Intron 0.14 TCGA-BW-A5NQ-01 19 36256039 36256039 T C C19orf55 Missense_Mutation p.I244T 0.23 tolerated(1) benign(0.003) TCGA-BW-A5NQ-01 19 40316849 40316849 T C DYRK1B Missense_Mutation p.I497V 0.29 tolerated_low_confidence(1) benign(0.001) TCGA-BW-A5NQ-01 19 42212653 42212653 G A CEA Translation_Start_Site p.M1? 0.15 deleterious(0.01) possibly_damaging(0.837) TCGA-BW-A5NQ-01 19 8032602 8032602 T C ELAVL1 Missense_Mutation p.N168S 0.31 tolerated(0.06) benign(0.238) TCGA-BW-A5NQ-01 19 8196686 8196686 A G FBN3 Missense_Mutation p.I581T 0.14 deleterious(0.05) possibly_damaging(0.672) TCGA-BW-A5NQ-01 19 9015640 9015640 T G MUC16 Missense_Mutation p.E12728A 0.33 benign(0.262) TCGA-BW-A5NQ-01 1 14075966 14075966 C A PRDM2 Silent p.S165S 0.18 TCGA-BW-A5NQ-01 1 151374407 151374407 A C PSMB4 3'UTR 0.19 TCGA-BW-A5NQ-01 1 152282032 152282032 G C FLG Missense_Mutation p.S1777C 0.23 possibly_damaging(0.7) TCGA-BW-A5NQ-01 1 155148663 155148663 G T TRIM46 Missense_Mutation p.A209S 0.53 deleterious(0) probably_damaging(0.997) TCGA-BW-A5NQ-01 1 158516972 158516972 C T OR6Y1 Silent p.K308K 0.37 TCGA-BW-A5NQ-01 1 161199308 161199308 T C TOMM40L 3'UTR 0.46 TCGA-BW-A5NQ-01 1 161488116 161488116 G A FCGR2A 3'UTR 0.46 TCGA-BW-A5NQ-01 1 183891363 183891363 G A RGL1 Missense_Mutation p.S706N 0.14 tolerated(0.11) benign(0.084) TCGA-BW-A5NQ-01 1 186120388 186120388 G C HMCN1 Missense_Mutation p.G4889R 0.24 probably_damaging(0.999) TCGA-BW-A5NQ-01 1 204197269 204197269 C A PLEKHA6 Silent p.R991R 0.38 TCGA-BW-A5NQ-01 1 221879681 221879681 G A DUSP10 Silent p.T313T 0.53 TCGA-BW-A5NQ-01 1 247588695 247588695 C - NLRP3 Frame_Shift_Del p.K652Rfs*70 0.32 TCGA-BW-A5NQ-01 1 27106299 27106300 - CTGGA ARID1A Frame_Shift_Ins p.Q1974Tfs*43 0.19 TCGA-BW-A5NQ-01 1 62995020 62995020 G C DOCK7 Missense_Mutation p.R1206G 0.04 deleterious(0) possibly_damaging(0.702) TCGA-BW-A5NQ-01 1 7887614 7887614 A G PER3 Silent p.P867P 0.38 TCGA-BW-A5NQ-01 1 97981322 97981322 C A DPYD Missense_Mutation p.G567V 0.23 deleterious(0) probably_damaging(1) TCGA-BW-A5NQ-01 1 99358645 99358645 A G LPPR5 Missense_Mutation p.F317L 0.46 tolerated(0.15) benign(0.016) TCGA-BW-A5NQ-01 21 10862949 10862949 A T IGHV1OR21-1 Missense_Mutation p.K82M 0.08 deleterious(0.05) benign(0.198) TCGA-BW-A5NQ-01 21 31661480 31661480 C A KRTAP25-1 3'UTR 0.43 TCGA-BW-A5NQ-01 21 39817538 39817538 A C ERG Missense_Mutation p.L16V 0.18 deleterious(0) probably_damaging(0.999) TCGA-BW-A5NQ-01 21 46057890 46057890 C T KRTAP10-10 Missense_Mutation p.P186S 0.07 deleterious(0.02) probably_damaging(1) TCGA-BW-A5NQ-01 22 36876748 36876748 G A TXN2 Missense_Mutation p.P46L 0.23 tolerated(0.82) benign(0.002) TCGA-BW-A5NQ-01 2 101648734 101648734 C G TBC1D8 Silent p.V629V 0.22 TCGA-BW-A5NQ-01 2 1437304 1437304 G A TPO Missense_Mutation p.E92K 0.05 deleterious(0) possibly_damaging(0.468) TCGA-BW-A5NQ-01 2 168725799 168725799 A T B3GALT1 Missense_Mutation p.I84F 0.19 deleterious(0) probably_damaging(0.98) TCGA-BW-A5NQ-01 2 180036950 180036950 G C SESTD1 Missense_Mutation p.P89R 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-BW-A5NQ-01 2 187540572 187540572 C A ITGAV Missense_Mutation p.S949Y 0.25 deleterious(0.04) possibly_damaging(0.786) TCGA-BW-A5NQ-01 2 187693382 187693382 T C ZSWIM2 Missense_Mutation p.R411G 0.29 tolerated(0.21) benign(0.01) TCGA-BW-A5NQ-01 2 192701015 192701015 C T SDPR Silent p.E304E 0.24 TCGA-BW-A5NQ-01 2 197080657 197080657 T A HECW2 Silent p.S1513S 0.33 TCGA-BW-A5NQ-01 2 226446820 226446820 C T NYAP2 Silent p.S229S 0.24 TCGA-BW-A5NQ-01 2 238255172 238255172 C A COL6A3 Nonsense_Mutation p.G2356* 0.21 TCGA-BW-A5NQ-01 2 55252314 55252314 A G RTN4 Missense_Mutation p.V974A 0.23 tolerated(0.58) benign(0.016) TCGA-BW-A5NQ-01 2 96957523 96957523 G A SNRNP200 Missense_Mutation p.T759I 0.16 deleterious(0.03) benign(0.133) TCGA-BW-A5NQ-01 2 99279834 99279834 T A MGAT4A Intron 0.15 TCGA-BW-A5NQ-01 3 134338015 134338015 C A KY Missense_Mutation p.A229S 0.24 tolerated(0.12) benign(0.329) TCGA-BW-A5NQ-01 3 139195311 139195311 C T RBP2 5'UTR 0.38 TCGA-BW-A5NQ-01 3 157146119 157146120 - T VEPH1 Frame_Shift_Ins p.Q230Tfs*22 0.24 TCGA-BW-A5NQ-01 3 193159259 193159259 G T ATP13A4 Missense_Mutation p.P812Q 0.42 tolerated(0.14) possibly_damaging(0.677) TCGA-BW-A5NQ-01 3 41266113 41266113 C T CTNNB1 Missense_Mutation p.S37F 0.37 deleterious(0) probably_damaging(0.962) TCGA-BW-A5NQ-01 3 58116537 58116537 T A FLNB Missense_Mutation p.L1431Q 0.21 deleterious(0) possibly_damaging(0.649) TCGA-BW-A5NQ-01 4 16165127 16165127 A T TAPT1 Missense_Mutation p.I503N 0.20 tolerated(0.06) benign(0.035) TCGA-BW-A5NQ-01 4 26322670 26322670 G A RBPJ Intron 0.15 TCGA-BW-A5NQ-01 4 36317997 36317997 C T DTHD1 Silent p.V618V 0.23 TCGA-BW-A5NQ-01 4 39876002 39876002 T A PDS5A Silent p.A728A 0.26 TCGA-BW-A5NQ-01 4 59340 59340 G T ZNF595 Missense_Mutation p.R7S 0.05 deleterious_low_confidence(0.02) benign(0.392) TCGA-BW-A5NQ-01 4 7726889 7726889 C T SORCS2 Nonsense_Mutation p.Q874* 0.22 TCGA-BW-A5NQ-01 4 90035516 90035516 A G TIGD2 Missense_Mutation p.K464R 0.18 tolerated(0.05) benign(0.071) TCGA-BW-A5NQ-01 5 113798833 113798833 C T KCNN2 Silent p.D363D 0.20 TCGA-BW-A5NQ-01 5 11384929 11384929 G A CTNND2 Missense_Mutation p.S342F 0.39 deleterious(0.01) possibly_damaging(0.707) TCGA-BW-A5NQ-01 5 150885501 150885501 G A FAT2 Silent p.G4225G 0.23 TCGA-BW-A5NQ-01 5 169689860 169689860 C TT LCP2 Frame_Shift_Ins p.I269Nfs*27 0.17 TCGA-BW-A5NQ-01 5 175110734 175110734 G A HRH2 Silent p.K166K 0.07 TCGA-BW-A5NQ-01 5 19747259 19747259 A T CDH18 Missense_Mutation p.D105E 0.20 tolerated(1) benign(0.002) TCGA-BW-A5NQ-01 5 21765180 21765180 A T CDH12 Missense_Mutation p.N474K 0.28 tolerated(0.11) benign(0.001) TCGA-BW-A5NQ-01 5 41042223 41042223 C A MROH2B Missense_Mutation p.A642S 0.38 tolerated(0.21) benign(0.006) TCGA-BW-A5NQ-01 5 70840961 70840961 A T BDP1 Missense_Mutation p.D2220V 0.22 deleterious(0.02) benign(0.226) TCGA-BW-A5NQ-01 5 89943506 89943506 A G GPR98 Missense_Mutation p.I1072V 0.47 benign(0.394) TCGA-BW-A5NQ-01 6 105573357 105573357 A T BVES Missense_Mutation p.C150S 0.33 deleterious(0.03) possibly_damaging(0.888) TCGA-BW-A5NQ-01 6 110086337 110086337 A G FIG4 Missense_Mutation p.N519S 0.35 tolerated(0.47) benign(0.011) TCGA-BW-A5NQ-01 6 130761614 130761614 G - TMEM200A Frame_Shift_Del p.R16Sfs*52 0.10 TCGA-BW-A5NQ-01 6 143095836 143095836 A C HIVEP2 Missense_Mutation p.S14A 0.37 tolerated(0.07) possibly_damaging(0.907) TCGA-BW-A5NQ-01 6 31113531 31113531 C A CCHCR1 Missense_Mutation p.Q545H 0.30 deleterious(0) benign(0.032) TCGA-BW-A5NQ-01 6 31778986 31778986 A C HSPA1L Missense_Mutation p.I255S 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-BW-A5NQ-01 7 129951882 129951882 A T CPA4 Missense_Mutation p.K333M 0.26 deleterious(0.05) benign(0.017) TCGA-BW-A5NQ-01 7 135612279 135612279 G T AC015987.2 5'UTR 0.28 TCGA-BW-A5NQ-01 7 29103758 29103758 T G CPVL Silent p.G352G 0.04 TCGA-BW-A5NQ-01 7 50136120 50136120 A G C7orf72 Missense_Mutation p.T147A 0.29 tolerated(0.6) benign(0.024) TCGA-BW-A5NQ-01 7 74824182 74824182 C T GATSL2 Splice_Site p.X62_splice 0.26 TCGA-BW-A5NQ-01 7 76942835 76942835 C A GSAP Silent p.L747L 0.20 TCGA-BW-A5NQ-01 7 79833109 79833109 T C GNAI1 Missense_Mutation p.I184T 0.26 deleterious(0) probably_damaging(0.99) TCGA-BW-A5NQ-01 7 81600131 81600131 G A CACNA2D1 Intron 0.44 TCGA-BW-A5NQ-01 7 86526919 86526919 C T KIAA1324L Missense_Mutation p.C863Y 0.25 deleterious(0) probably_damaging(1) TCGA-BW-A5NQ-01 8 113240991 113240991 T G CSMD3 Missense_Mutation p.K3653T 0.59 deleterious(0) probably_damaging(0.998) TCGA-BW-A5NQ-01 8 133906037 133906037 A T TG Missense_Mutation p.E955V 0.44 deleterious(0.04) benign(0.19) TCGA-BW-A5NQ-01 8 23217774 23217774 G A LOXL2 Silent p.P120P 0.21 TCGA-BW-A5NQ-01 9 113312196 113312196 C T SVEP1 Silent p.E240E 0.19 TCGA-BW-A5NQ-01 9 134405967 134405967 C T UCK1 Silent p.K63K 0.23 TCGA-BW-A5NQ-01 9 32786562 32786562 T G TMEM215 3'UTR 0.18 TCGA-BW-A5NQ-01 9 5922603 5922603 A G KIAA2026 Silent p.G1131G 0.37 TCGA-BW-A5NQ-01 9 84531871 84531871 T C SPATA31D5P RNA 0.27 TCGA-BW-A5NQ-01 X 131348421 131348421 G C RAP2C Silent p.V109V 0.49 TCGA-BW-A5NQ-01 X 73960550 73960550 C A KIAA2022 Missense_Mutation p.G1281V 0.50 deleterious(0) possibly_damaging(0.502) TCGA-CC-5258-01 10 115609989 115609989 T C DCLRE1A Missense_Mutation p.D292G 0.31 deleterious(0.03) benign(0.082) TCGA-CC-5258-01 10 125769678 125769678 C T CHST15 Nonsense_Mutation p.W558* 0.35 TCGA-CC-5258-01 10 46999457 46999457 C G GPRIN2 Missense_Mutation p.Q193E 0.12 deleterious(0.03) benign(0.225) TCGA-CC-5258-01 10 47000008 47000008 G T GPRIN2 Silent p.P376P 0.08 TCGA-CC-5258-01 10 91477208 91477209 AC - KIF20B Frame_Shift_Del p.Q361Dfs*2 0.18 TCGA-CC-5258-01 11 115085443 115085443 C G CADM1 Silent p.L293L 0.16 TCGA-CC-5258-01 11 133814256 133814256 C A IGSF9B Missense_Mutation p.A90S 0.28 deleterious(0.05) benign(0.133) TCGA-CC-5258-01 11 34137375 34137375 G A NAT10 Silent p.V167V 0.28 TCGA-CC-5258-01 11 47611682 47611682 G A C1QTNF4 Silent p.G227G 0.39 TCGA-CC-5258-01 11 55927260 55927260 G T OR8K5 Nonsense_Mutation p.Y178* 0.24 TCGA-CC-5258-01 11 64900941 64900941 T C SYVN1 Silent p.A44A 0.36 TCGA-CC-5258-01 11 70507758 70507758 C A SHANK2 Missense_Mutation p.V628L 0.30 tolerated(0.05) possibly_damaging(0.552) TCGA-CC-5258-01 11 73372585 73372585 C T PLEKHB1 Missense_Mutation p.L224F 0.24 deleterious(0) probably_damaging(0.999) TCGA-CC-5258-01 11 7960259 7960259 G C OR10A3 Missense_Mutation p.T270S 0.35 tolerated(0.58) benign(0.047) TCGA-CC-5258-01 12 110206078 110206078 C A FAM222A Missense_Mutation p.T115K 0.11 tolerated(0.3) benign(0.025) TCGA-CC-5258-01 12 120580635 120580635 G A GCN1L1 Missense_Mutation p.S1869F 0.30 probably_damaging(0.999) TCGA-CC-5258-01 12 12291266 12291266 T C LRP6 Silent p.Q1200Q 0.34 TCGA-CC-5258-01 12 125438447 125438447 G A DHX37 Missense_Mutation p.R892W 0.16 deleterious(0) probably_damaging(1) TCGA-CC-5258-01 12 130927134 130927134 G T RIMBP2 Silent p.R238R 0.35 TCGA-CC-5258-01 12 25801457 25801457 A T IFLTD1 Missense_Mutation p.I10N 0.34 deleterious_low_confidence(0.01) benign(0.012) TCGA-CC-5258-01 12 31562239 31562239 C T DENND5B Missense_Mutation p.A921T 0.38 tolerated(0.29) benign(0.049) TCGA-CC-5258-01 12 52695648 52695648 C A KRT86 5'Flank 0.21 TCGA-CC-5258-01 12 57038650 57038650 T C ATP5B Missense_Mutation p.I134V 0.30 tolerated_low_confidence(0.94) benign(0.015) TCGA-CC-5258-01 12 57571304 57571304 G T LRP1 Missense_Mutation p.G1431C 0.35 probably_damaging(1) TCGA-CC-5258-01 12 6575091 6575091 C G VAMP1 Missense_Mutation p.A69P 0.40 deleterious(0) possibly_damaging(0.6) TCGA-CC-5258-01 12 95603522 95603522 G C FGD6 Missense_Mutation p.A513G 0.32 deleterious(0) probably_damaging(0.999) TCGA-CC-5258-01 13 108518800 108518800 T G FAM155A Missense_Mutation p.T49P 0.23 deleterious(0) probably_damaging(0.996) TCGA-CC-5258-01 13 113088962 113088962 T C SPACA7 3'UTR 0.09 TCGA-CC-5258-01 13 28143356 28143356 A C LNX2 Silent p.T155T 0.51 TCGA-CC-5258-01 13 38158220 38158220 C T POSTN Missense_Mutation p.A377T 0.20 tolerated(0.13) possibly_damaging(0.752) TCGA-CC-5258-01 13 49710511 49710511 A G FNDC3A Silent p.R178R 0.43 TCGA-CC-5258-01 13 80911451 80911451 G C SPRY2 Silent p.S130S 0.16 TCGA-CC-5258-01 14 20483095 20483095 G T OR4K14 Missense_Mutation p.F86L 0.25 tolerated(0.25) benign(0.05) TCGA-CC-5258-01 14 20820469 20820469 A G PARP2 Missense_Mutation p.Y201C 0.25 deleterious(0) probably_damaging(0.999) TCGA-CC-5258-01 14 29237565 29237565 C A FOXG1 Missense_Mutation p.N360K 0.20 deleterious(0.02) benign(0.3) TCGA-CC-5258-01 14 59930780 59930780 T C GPR135 Missense_Mutation p.I389V 0.13 tolerated(0.44) benign(0.006) TCGA-CC-5258-01 14 61997206 61997206 G T RP11-47I22.4 Missense_Mutation p.A57S 0.15 tolerated(0.42) probably_damaging(0.997) TCGA-CC-5258-01 14 70634968 70634968 C A SLC8A3 Missense_Mutation p.V58F 0.29 deleterious(0) possibly_damaging(0.729) TCGA-CC-5258-01 14 74995708 74995708 C A LTBP2 Missense_Mutation p.G702V 0.42 deleterious(0) probably_damaging(0.959) TCGA-CC-5258-01 14 77844990 77844990 C T SAMD15 Missense_Mutation p.T410I 0.20 tolerated(0.12) benign(0.014) TCGA-CC-5258-01 14 86092742 86092742 A G FLRT2 3'UTR 0.37 TCGA-CC-5258-01 14 94405769 94405769 G A ASB2 Silent p.G434G 0.13 TCGA-CC-5258-01 15 23686019 23686019 G A GOLGA6L2 Missense_Mutation p.R535W 0.41 unknown(0) TCGA-CC-5258-01 15 29346081 29346081 G A APBA2 5'UTR 0.31 TCGA-CC-5258-01 15 43571883 43571883 C T TGM7 Missense_Mutation p.G540S 0.30 tolerated(0.23) possibly_damaging(0.521) TCGA-CC-5258-01 15 44043872 44043872 A C PDIA3 Intron 0.20 TCGA-CC-5258-01 15 52258056 52258056 G C LEO1 Missense_Mutation p.P235R 0.17 tolerated_low_confidence(0.32) benign(0.074) TCGA-CC-5258-01 15 90799374 90799374 T A TTLL13 Missense_Mutation p.Y184N 0.38 deleterious(0.03) benign(0.059) TCGA-CC-5258-01 16 56920341 56920341 C - SLC12A3 Frame_Shift_Del p.F665Sfs*7 0.44 TCGA-CC-5258-01 16 628459 628459 C G PIGQ Missense_Mutation p.D341E 0.14 deleterious(0.03) possibly_damaging(0.602) TCGA-CC-5258-01 16 70884513 70884513 C G HYDIN Silent p.V4163V 0.55 TCGA-CC-5258-01 17 11738188 11738188 G A DNAH9 Silent p.A3160A 0.19 TCGA-CC-5258-01 17 26369851 26369851 A G NLK 5'UTR 0.29 TCGA-CC-5258-01 17 26967658 26967658 G A KIAA0100 Silent p.F270F 0.34 TCGA-CC-5258-01 17 34266279 34266279 C T LYZL6 Missense_Mutation p.A28T 0.48 deleterious(0.02) probably_damaging(0.999) TCGA-CC-5258-01 17 35538246 35538246 T C ACACA Missense_Mutation p.I1610V 0.52 tolerated(0.56) probably_damaging(0.976) TCGA-CC-5258-01 17 39579952 39579952 G C KRT37 Intron 0.58 TCGA-CC-5258-01 17 58156056 58156056 C T HEATR6 Splice_Site p.X73_splice 0.33 TCGA-CC-5258-01 17 71503642 71503642 G A SDK2 Silent p.S53S 0.45 TCGA-CC-5258-01 17 7216697 7216697 A G GPS2 Splice_Site p.X242_splice 0.52 TCGA-CC-5258-01 17 7577150 7577150 T - TP53 Frame_Shift_Del p.N263Ifs*82 0.36 TCGA-CC-5258-01 17 7950032 7950032 C - ALOX15B Frame_Shift_Del p.R417Gfs*25 0.18 TCGA-CC-5258-01 18 46860102 46860102 G A DYM Missense_Mutation p.P206S 0.13 tolerated(0.21) benign(0.012) TCGA-CC-5258-01 18 8088802 8088802 C T PTPRM Silent p.T603T 0.44 TCGA-CC-5258-01 19 14073811 14073811 T C RFX1 Missense_Mutation p.D922G 0.12 deleterious(0.02) possibly_damaging(0.787) TCGA-CC-5258-01 19 19740822 19740822 C T GMIP Missense_Mutation p.A955T 0.21 tolerated_low_confidence(0.34) benign(0.009) TCGA-CC-5258-01 19 22942280 22942281 - T ZNF99 Frame_Shift_Ins p.I144Nfs*5 0.23 TCGA-CC-5258-01 19 23927076 23927076 T C ZNF681 Missense_Mutation p.K426E 0.35 tolerated(1) benign(0) TCGA-CC-5258-01 19 36014399 36014399 G A SBSN 3'UTR 0.40 TCGA-CC-5258-01 19 36249050 36249050 C A C19orf55 5'Flank 0.33 TCGA-CC-5258-01 19 41850671 41850671 C A TGFB1 Silent p.R205R 0.27 TCGA-CC-5258-01 19 51294077 51294077 G A ACPT Missense_Mutation p.R88H 0.24 deleterious(0) probably_damaging(1) TCGA-CC-5258-01 19 53747099 53747099 C G ZNF677 Missense_Mutation p.E23Q 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-CC-5258-01 19 54646892 54646892 C T CNOT3 Silent p.G21G 0.28 TCGA-CC-5258-01 1 110775457 110775457 C A KCNC4 3'UTR 0.51 TCGA-CC-5258-01 1 115220086 115220086 C A AMPD1 Missense_Mutation p.R458L 0.15 deleterious(0) probably_damaging(1) TCGA-CC-5258-01 1 117122413 117122413 G A IGSF3 Missense_Mutation p.R999C 0.48 deleterious(0.01) possibly_damaging(0.836) TCGA-CC-5258-01 1 11849574 11849574 C G MTHFR 3'UTR 0.45 TCGA-CC-5258-01 1 149916120 149916120 C A OTUD7B Missense_Mutation p.G723V 0.59 tolerated_low_confidence(0.18) benign(0.003) TCGA-CC-5258-01 1 151958721 151958721 T C S100A10 5'UTR 0.25 TCGA-CC-5258-01 1 159505721 159505721 G T OR10J5 Missense_Mutation p.T26N 0.20 tolerated(0.05) possibly_damaging(0.655) TCGA-CC-5258-01 1 162343797 162343797 A C C1orf111 3'UTR 0.23 TCGA-CC-5258-01 1 175956209 175956209 T C RFWD2 Missense_Mutation p.Y668C 0.22 deleterious(0.01) benign(0.124) TCGA-CC-5258-01 1 179623394 179623394 T G TDRD5 Nonsense_Mutation p.L740* 0.08 TCGA-CC-5258-01 1 200522769 200522769 T C KIF14 Missense_Mutation p.H1565R 0.11 tolerated(0.56) benign(0) TCGA-CC-5258-01 1 222705320 222705320 C G HHIPL2 Missense_Mutation p.E571Q 0.40 deleterious(0) probably_damaging(0.985) TCGA-CC-5258-01 1 235318339 235318339 C A RBM34 Missense_Mutation p.V152L 0.46 tolerated(0.48) benign(0.062) TCGA-CC-5258-01 1 245772747 245772747 C G KIF26B Missense_Mutation p.L611V 0.17 deleterious(0) unknown(0) TCGA-CC-5258-01 1 27087888 27087898 ACCTCGGCCAC CCCTCG ARID1A Frame_Shift_Del p.P728Qfs*87 0.11 TCGA-CC-5258-01 1 28823173 28823173 G C PHACTR4 3'UTR 0.37 TCGA-CC-5258-01 1 32207068 32207068 C A BAI2 Missense_Mutation p.R567L 0.50 deleterious(0) probably_damaging(0.998) TCGA-CC-5258-01 1 44402421 44402421 G T ARTN Missense_Mutation p.C224F 0.46 deleterious(0) probably_damaging(0.997) TCGA-CC-5258-01 1 52705203 52705203 G T ZFYVE9 Missense_Mutation p.C705F 0.12 deleterious(0) probably_damaging(1) TCGA-CC-5258-01 20 1349973 1349977 AAAGT - FKBP1A 3'UTR 0.23 TCGA-CC-5258-01 20 39317800 39317800 C - MAFB 5'UTR 0.17 TCGA-CC-5258-01 20 48599589 48599589 C A SNAI1 5'UTR 0.09 TCGA-CC-5258-01 20 5904318 5904318 C A CHGB Missense_Mutation p.H510N 0.31 tolerated(0.31) possibly_damaging(0.678) TCGA-CC-5258-01 21 47850032 47850032 C T PCNT Missense_Mutation p.A2600V 0.17 possibly_damaging(0.75) TCGA-CC-5258-01 22 38119347 38119347 G A TRIOBP Missense_Mutation p.A262T 0.27 deleterious_low_confidence(0.02) benign(0.015) TCGA-CC-5258-01 22 39262696 39262696 A G CBX6 Missense_Mutation p.S253P 0.12 tolerated(0.08) benign(0) TCGA-CC-5258-01 22 40574047 40574047 A C TNRC6B 5'UTR 0.33 TCGA-CC-5258-01 22 42908252 42908252 C G RRP7A 3'UTR 0.22 TCGA-CC-5258-01 2 108622601 108622601 G A SLC5A7 Missense_Mutation p.G280R 0.41 deleterious(0) probably_damaging(0.911) TCGA-CC-5258-01 2 132919310 132919310 C A ANKRD30BL 5'UTR 0.37 TCGA-CC-5258-01 2 143718192 143718192 G A KYNU Splice_Site p.X195_splice 0.22 TCGA-CC-5258-01 2 166211045 166211045 A G SCN2A Missense_Mutation p.D1088G 0.30 tolerated(0.06) possibly_damaging(0.72) TCGA-CC-5258-01 2 178483360 178483360 C G TTC30A Missense_Mutation p.D24H 0.26 deleterious(0) possibly_damaging(0.62) TCGA-CC-5258-01 2 188210836 188210836 C T CALCRL 3'UTR 0.27 TCGA-CC-5258-01 2 219528117 219528142 GGGCTCAGCTCAGCTCTCCTCCTCTA - BCS1L 3'UTR 0.38 TCGA-CC-5258-01 2 239167286 239167286 C T PER2 Splice_Site p.X543_splice 0.38 TCGA-CC-5258-01 2 29075273 29075273 C T TRMT61B Splice_Site p.X362_splice 0.29 TCGA-CC-5258-01 2 38976737 38976737 T C SRSF7 Missense_Mutation p.Y107C 0.36 deleterious(0) probably_damaging(0.998) TCGA-CC-5258-01 2 55470647 55470647 G - MTIF2 Frame_Shift_Del p.S490* 0.13 TCGA-CC-5258-01 2 55582881 55582881 T C CCDC88A Missense_Mutation p.I212V 0.39 tolerated(1) benign(0.001) TCGA-CC-5258-01 2 61245411 61245411 C A PEX13 Intron 0.15 TCGA-CC-5258-01 2 80782831 80782831 G C CTNNA2 Missense_Mutation p.L518F 0.50 deleterious(0.01) probably_damaging(0.997) TCGA-CC-5258-01 2 88874198 88874198 G A EIF2AK3 Missense_Mutation p.H935Y 0.24 deleterious(0) probably_damaging(1) TCGA-CC-5258-01 3 129811029 129811029 C A RP11-93K22.13 Intron 0.35 TCGA-CC-5258-01 3 132407637 132407637 T C NPHP3 Silent p.V994V 0.17 TCGA-CC-5258-01 3 1371531 1371531 G A CNTN6 Missense_Mutation p.D426N 0.36 tolerated(0.1) benign(0.011) TCGA-CC-5258-01 3 1371532 1371532 A T CNTN6 Missense_Mutation p.D426V 0.35 tolerated(0.08) possibly_damaging(0.632) TCGA-CC-5258-01 3 156865913 156865913 A G CCNL1 3'UTR 0.21 TCGA-CC-5258-01 3 173996955 173996955 C - NLGN1 Frame_Shift_Del p.Q389Kfs*5 0.23 TCGA-CC-5258-01 3 33840383 33840383 G A PDCD6IP Missense_Mutation p.G55S 0.61 tolerated(0.42) benign(0.002) TCGA-CC-5258-01 3 52255499 52255499 C T TLR9 Missense_Mutation p.G1099S 0.28 deleterious(0.01) possibly_damaging(0.652) TCGA-CC-5258-01 3 62518698 62518698 G A CADPS Silent p.D713D 0.11 TCGA-CC-5258-01 3 77089848 77089848 A G ROBO2 Intron 0.21 TCGA-CC-5258-01 4 1015991 1015991 G T FGFRL1 Missense_Mutation p.G27V 0.32 deleterious(0) unknown(0) TCGA-CC-5258-01 4 128806961 128806961 C T PLK4 Missense_Mutation p.R146C 0.34 deleterious(0.03) probably_damaging(0.932) TCGA-CC-5258-01 4 143043286 143043286 T C INPP4B Silent p.G710G 0.24 TCGA-CC-5258-01 4 62849309 62849309 G T LPHN3 Missense_Mutation p.G1007V 0.50 deleterious(0) probably_damaging(0.98) TCGA-CC-5258-01 4 70455333 70455333 G T UGT2A1 Missense_Mutation p.H613Q 0.47 tolerated(0.16) benign(0.072) TCGA-CC-5258-01 4 71024516 71024516 C A C4orf40 Missense_Mutation p.P183T 0.29 deleterious(0) unknown(0) TCGA-CC-5258-01 5 127610344 127610344 G T FBN2 Missense_Mutation p.N2542K 0.27 deleterious(0.01) probably_damaging(0.99) TCGA-CC-5258-01 5 134246024 134246024 G C PCBD2 Splice_Site p.X29_splice 0.18 TCGA-CC-5258-01 5 176895871 176895871 T A DBN1 Missense_Mutation p.D41V 0.15 deleterious(0) probably_damaging(0.996) TCGA-CC-5258-01 5 38370498 38370498 G T EGFLAM Missense_Mutation p.V216L 0.39 tolerated_low_confidence(0.09) benign(0.291) TCGA-CC-5258-01 5 40835365 40835365 G A RPL37 5'UTR 0.56 TCGA-CC-5258-01 5 58511778 58511778 C T PDE4D Missense_Mutation p.G158S 0.12 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-CC-5258-01 5 58882174 58882174 T C PDE4D Intron 0.45 TCGA-CC-5258-01 5 89953983 89953983 C T GPR98 Missense_Mutation p.S1547F 0.13 probably_damaging(0.962) TCGA-CC-5258-01 5 95091309 95091309 A G RHOBTB3 Missense_Mutation p.I298V 0.16 tolerated(0.57) benign(0.003) TCGA-CC-5258-01 6 111678241 111678241 T A REV3L Missense_Mutation p.H2387L 0.30 deleterious(0.03) benign(0) TCGA-CC-5258-01 6 139308889 139308889 C A REPS1 5'UTR 0.46 TCGA-CC-5258-01 6 144758707 144758707 A G UTRN Missense_Mutation p.M356V 0.41 deleterious(0) probably_damaging(0.992) TCGA-CC-5258-01 6 15507624 15507624 T A JARID2 Missense_Mutation p.L903Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-CC-5258-01 6 170102867 170102867 G T C6orf120 Silent p.V104V 0.22 TCGA-CC-5258-01 6 29395051 29395051 C T OR11A1 Missense_Mutation p.R123H 0.39 deleterious(0.01) probably_damaging(0.909) TCGA-CC-5258-01 6 33054620 33054620 A G HLA-DPB1 3'UTR 0.11 TCGA-CC-5258-01 6 46607325 46607325 G A CYP39A1 Missense_Mutation p.L132F 0.18 deleterious(0) probably_damaging(0.956) TCGA-CC-5258-01 6 51732778 51732778 A G PKHD1 Missense_Mutation p.I2539T 0.32 deleterious(0) possibly_damaging(0.517) TCGA-CC-5258-01 6 55263983 55263983 C A GFRAL Missense_Mutation p.P320T 0.31 tolerated(0.64) benign(0.221) TCGA-CC-5258-01 6 55263984 55263984 C A GFRAL Missense_Mutation p.P320Q 0.31 tolerated(0.46) possibly_damaging(0.499) TCGA-CC-5258-01 6 70778319 70778319 C T COL19A1 Missense_Mutation p.S392F 0.30 deleterious(0.05) unknown(0) TCGA-CC-5258-01 6 70993489 70993489 G T COL9A1 Missense_Mutation p.P244H 0.30 unknown(0) TCGA-CC-5258-01 6 84772699 84772699 C A MRAP2 Missense_Mutation p.A72D 0.37 deleterious(0) probably_damaging(0.999) TCGA-CC-5258-01 6 89967516 89967516 C A GABRR2 Missense_Mutation p.G424V 0.35 tolerated(0.06) benign(0.424) TCGA-CC-5258-01 7 119914945 119914945 C A KCND2 Missense_Mutation p.R87S 0.44 deleterious(0) probably_damaging(1) TCGA-CC-5258-01 7 123270025 123270025 T C ASB15 Silent p.C482C 0.39 TCGA-CC-5258-01 7 12384011 12384011 T G VWDE Missense_Mutation p.N1324T 0.17 deleterious(0.01) probably_damaging(0.925) TCGA-CC-5258-01 7 127894836 127894836 C A LEP 3'UTR 0.25 TCGA-CC-5258-01 7 150094966 150094966 G T ZNF775 Missense_Mutation p.R466L 0.21 deleterious(0) probably_damaging(0.999) TCGA-CC-5258-01 7 150390064 150390064 G T GIMAP2 Silent p.V230V 0.21 TCGA-CC-5258-01 7 26412162 26412162 T A SNX10 Nonsense_Mutation p.C192* 0.31 TCGA-CC-5258-01 7 38725189 38725189 G C FAM183B 3'UTR 0.40 TCGA-CC-5258-01 7 39504010 39504010 G T POU6F2 Missense_Mutation p.G601W 0.18 deleterious(0) unknown(0) TCGA-CC-5258-01 7 79764496 79764496 C T GNAI1 Missense_Mutation p.A7V 0.23 tolerated(0.08) benign(0.002) TCGA-CC-5258-01 8 106331156 106331156 C T ZFPM2 5'UTR 0.14 TCGA-CC-5258-01 8 110457487 110457487 A C PKHD1L1 Missense_Mutation p.N1797H 0.06 deleterious(0.04) benign(0.033) TCGA-CC-5258-01 8 113662479 113662479 C A CSMD3 Missense_Mutation p.S1035I 0.08 deleterious(0.03) possibly_damaging(0.723) TCGA-CC-5258-01 8 11994739 11994739 T C USP17L2 Missense_Mutation p.R511G 0.11 tolerated(0.09) benign(0.081) TCGA-CC-5258-01 8 131164981 131164981 C T ASAP1 Splice_Site p.X360_splice 0.16 TCGA-CC-5258-01 8 141521569 141521569 G T CHRAC1 5'UTR 0.88 TCGA-CC-5258-01 8 142517301 142517302 - GCCTGTGG MROH5 5'UTR 0.26 TCGA-CC-5258-01 8 144733912 144733913 AG - ZNF623 3'UTR 0.27 TCGA-CC-5258-01 8 63973866 63973866 T C TTPA Missense_Mutation p.N261S 0.20 tolerated(0.18) benign(0.001) TCGA-CC-5258-01 8 72948615 72948615 G T TRPA1 Silent p.P821P 0.15 TCGA-CC-5258-01 8 87162487 87162487 C A ATP6V0D2 Missense_Mutation p.D262E 0.84 tolerated(1) benign(0.002) TCGA-CC-5258-01 9 100057188 100057188 C G CCDC180 5'UTR 0.54 TCGA-CC-5258-01 9 127563918 127563918 C A OLFML2A Missense_Mutation p.Q299K 0.51 tolerated(0.89) benign(0.005) TCGA-CC-5258-01 9 131183275 131183275 G T CERCAM Missense_Mutation p.R40L 0.71 deleterious(0) probably_damaging(1) TCGA-CC-5258-01 9 137320977 137320977 T G RXRA Missense_Mutation p.S312A 0.56 tolerated(0.45) benign(0.405) TCGA-CC-5258-01 9 137320981 137320981 T C RXRA Missense_Mutation p.F313S 0.55 deleterious(0.01) probably_damaging(0.998) TCGA-CC-5258-01 9 138011770 138011770 G A OLFM1 Missense_Mutation p.A384T 0.59 deleterious(0.01) probably_damaging(0.948) TCGA-CC-5258-01 9 32457157 32457157 T C DDX58 Missense_Mutation p.E914G 0.37 tolerated(0.19) benign(0.011) TCGA-CC-5258-01 9 32457172 32457178 TTCCACT - DDX58 Frame_Shift_Del p.K907Rfs*29 0.41 TCGA-CC-5258-01 X 153031765 153031765 C A PLXNB3 Missense_Mutation p.P34T 0.59 deleterious_low_confidence(0.02) benign(0.002) TCGA-CC-5258-01 X 55117891 55117891 G A PAGE2 Splice_Site p.X107_splice 0.33 TCGA-CC-5258-01 X 92927476 92927476 T A NAP1L3 Silent p.A276A 0.72 TCGA-CC-5259-01 10 105006851 105006851 T A RPEL1 3'UTR 0.42 TCGA-CC-5259-01 10 119001223 119001223 G C SLC18A2 Missense_Mutation p.A7P 0.59 deleterious(0.04) benign(0.125) TCGA-CC-5259-01 10 128798514 128798514 A T DOCK1 Missense_Mutation p.R310W 0.35 deleterious(0.01) possibly_damaging(0.675) TCGA-CC-5259-01 10 135009191 135009191 G A KNDC1 Missense_Mutation p.V534I 0.26 tolerated(0.23) probably_damaging(0.939) TCGA-CC-5259-01 10 20453406 20453406 T - PLXDC2 Frame_Shift_Del p.L265Wfs*5 0.27 TCGA-CC-5259-01 10 23244747 23244747 A G ARMC3 Missense_Mutation p.K60E 0.29 deleterious(0) probably_damaging(0.999) TCGA-CC-5259-01 10 27324233 27324233 T C ANKRD26 Missense_Mutation p.N1049S 0.44 tolerated(0.06) benign(0.1) TCGA-CC-5259-01 10 35103924 35103924 G - PARD3 5'UTR 0.39 TCGA-CC-5259-01 10 35103925 35103925 C A PARD3 5'UTR 0.47 TCGA-CC-5259-01 10 35456556 35456556 G C CREM Intron 0.42 TCGA-CC-5259-01 10 49917873 49917873 A T WDFY4 Silent p.P32P 0.32 TCGA-CC-5259-01 10 5494450 5494450 A G NET1 Missense_Mutation p.K165E 0.05 tolerated(0.3) probably_damaging(0.968) TCGA-CC-5259-01 10 55996688 55996688 C A PCDH15 Nonsense_Mutation p.E294* 0.26 TCGA-CC-5259-01 10 75414002 75414002 G A SYNPO2L Nonsense_Mutation p.R48* 0.09 TCGA-CC-5259-01 11 113078628 113078628 A G NCAM1 Missense_Mutation p.I333V 0.37 tolerated(0.23) benign(0.413) TCGA-CC-5259-01 11 117301488 117301488 G A DSCAML1 Missense_Mutation p.A1939V 0.06 tolerated(0.34) benign(0.024) TCGA-CC-5259-01 11 56468094 56468094 C A OR9G1 Silent p.T77T 0.22 TCGA-CC-5259-01 11 61547380 61547380 C G MYRF Missense_Mutation p.L772V 0.48 deleterious(0.01) probably_damaging(0.997) TCGA-CC-5259-01 11 62292811 62292811 T A AHNAK Missense_Mutation p.K3026N 0.41 probably_damaging(0.999) TCGA-CC-5259-01 11 66463896 66463896 C T SPTBN2 Missense_Mutation p.R1377H 0.34 deleterious(0.01) possibly_damaging(0.703) TCGA-CC-5259-01 11 85346870 85346870 T C TMEM126B Intron 0.20 TCGA-CC-5259-01 11 9192221 9192221 G A DENND5A Silent p.F670F 0.07 TCGA-CC-5259-01 12 101381353 101381353 A T ANO4 Missense_Mutation p.L178F 0.55 tolerated(0.22) benign(0.14) TCGA-CC-5259-01 12 104149204 104149204 A G STAB2 Missense_Mutation p.N2280S 0.55 deleterious(0.02) benign(0.158) TCGA-CC-5259-01 12 122287654 122287654 T C HPD Missense_Mutation p.I153V 0.22 deleterious(0.02) benign(0) TCGA-CC-5259-01 12 125398140 125398140 T G UBC Missense_Mutation p.N60H 0.03 deleterious(0) benign(0.083) TCGA-CC-5259-01 12 55038732 55038732 C A DCD Intron 0.37 TCGA-CC-5259-01 12 57493655 57493655 C T STAT6 Missense_Mutation p.V547I 0.25 tolerated(0.05) probably_damaging(0.999) TCGA-CC-5259-01 12 58008160 58008160 C T ARHGEF25 Silent p.L274L 0.07 TCGA-CC-5259-01 12 66703544 66703544 A T HELB Missense_Mutation p.Q279L 0.65 deleterious(0) benign(0.391) TCGA-CC-5259-01 12 7470658 7470658 G C ACSM4 Missense_Mutation p.W267C 0.07 deleterious(0) probably_damaging(1) TCGA-CC-5259-01 12 80730730 80730730 G C OTOGL Missense_Mutation p.K1593N 0.52 tolerated(0.25) possibly_damaging(0.901) TCGA-CC-5259-01 12 80936556 80936556 G T PTPRQ Missense_Mutation p.D1253Y 0.12 tolerated(0.57) benign(0.029) TCGA-CC-5259-01 13 67801363 67801363 C A PCDH9 Nonsense_Mutation p.E404* 0.88 TCGA-CC-5259-01 14 94079314 94079314 A T UNC79 Missense_Mutation p.K1132M 0.81 deleterious(0.05) probably_damaging(0.999) TCGA-CC-5259-01 15 23194749 23194749 C T WHAMMP3 RNA 0.15 TCGA-CC-5259-01 15 33359290 33359290 A T FMN1 Missense_Mutation p.S266T 0.71 tolerated_low_confidence(0.53) unknown(0) TCGA-CC-5259-01 15 45427708 45427708 A G DUOX1 Missense_Mutation p.I178V 0.49 tolerated(0.06) benign(0.173) TCGA-CC-5259-01 15 48495298 48495298 C A CTXN2 3'UTR 0.05 TCGA-CC-5259-01 15 51828802 51828802 T A DMXL2 Silent p.A625A 0.74 TCGA-CC-5259-01 15 52622690 52622690 T A MYO5A Missense_Mutation p.Q1447L 0.65 deleterious(0.02) benign(0.146) TCGA-CC-5259-01 15 73615574 73615574 G C HCN4 Missense_Mutation p.L954V 0.47 tolerated_low_confidence(0.13) unknown(0) TCGA-CC-5259-01 16 21061288 21061288 T A DNAH3 Silent p.P1430P 0.39 TCGA-CC-5259-01 16 2225896 2225896 A T TRAF7 Missense_Mutation p.Y563F 0.39 deleterious(0) probably_damaging(1) TCGA-CC-5259-01 16 32891008 32891008 A T SLC6A10P RNA 0.26 TCGA-CC-5259-01 16 50259196 50259196 A G PAPD5 Silent p.V585V 0.38 TCGA-CC-5259-01 16 855532 855532 C G PRR25 Silent p.P30P 0.23 TCGA-CC-5259-01 17 2929754 2929754 G A RAP1GAP2 Missense_Mutation p.S659N 0.82 tolerated(0.05) benign(0.01) TCGA-CC-5259-01 17 39334191 39334191 A T KRTAP4-2 Missense_Mutation p.C76S 0.78 tolerated(0.06) probably_damaging(0.955) TCGA-CC-5259-01 17 39535916 39535916 A G KRT34 Missense_Mutation p.V261A 0.72 deleterious(0.03) benign(0.256) TCGA-CC-5259-01 17 39597173 39597173 T C KRT38 Translation_Start_Site p.M1? 0.76 tolerated(0.24) benign(0.033) TCGA-CC-5259-01 17 61513455 61513455 G T CYB561 Missense_Mutation p.H87Q 0.59 deleterious(0) probably_damaging(1) TCGA-CC-5259-01 17 61829358 61829358 C A CCDC47 Missense_Mutation p.R438I 0.63 deleterious(0) probably_damaging(1) TCGA-CC-5259-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.78 TCGA-CC-5259-01 18 34182638 34182638 G A FHOD3 Silent p.G240G 0.42 TCGA-CC-5259-01 18 34205566 34205566 C T FHOD3 Silent p.G350G 0.45 TCGA-CC-5259-01 18 53018190 53018190 G A TCF4 Silent p.T240T 0.49 TCGA-CC-5259-01 19 16263989 16263989 A G HSH2D 3'UTR 0.12 TCGA-CC-5259-01 19 2214500 2214500 G T DOT1L Missense_Mutation p.D610Y 0.05 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CC-5259-01 19 23544469 23544469 C T ZNF91 Missense_Mutation p.E438K 0.20 deleterious(0.01) benign(0.059) TCGA-CC-5259-01 19 34001941 34001941 T A PEPD Missense_Mutation p.M108L 0.33 tolerated(0.28) benign(0.001) TCGA-CC-5259-01 19 3612206 3612206 G A CACTIN Silent p.D664D 0.73 TCGA-CC-5259-01 19 37005748 37005748 T A ZNF260 Silent p.T131T 0.19 TCGA-CC-5259-01 19 37210908 37210908 A T ZNF567 Nonsense_Mutation p.K397* 0.11 TCGA-CC-5259-01 19 40971596 40971596 C A BLVRB 5'UTR 0.69 TCGA-CC-5259-01 19 44611314 44611314 A T ZNF224 Missense_Mutation p.H334L 0.24 deleterious(0) probably_damaging(0.997) TCGA-CC-5259-01 19 45260278 45260278 C T BCL3 Missense_Mutation p.P175L 0.18 deleterious(0) probably_damaging(1) TCGA-CC-5259-01 19 51981868 51981868 C A CEACAM18 Missense_Mutation p.P52H 0.17 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-CC-5259-01 19 52023303 52023303 T A SIGLEC6 3'UTR 0.22 TCGA-CC-5259-01 19 55795935 55795935 A T BRSK1 Missense_Mutation p.K42I 0.17 deleterious(0.02) benign(0.003) TCGA-CC-5259-01 19 55870535 55870535 C T FAM71E2 Silent p.L567L 0.14 TCGA-CC-5259-01 19 5772804 5772804 G A CATSPERD Missense_Mutation p.R590Q 0.32 tolerated(0.22) benign(0.062) TCGA-CC-5259-01 19 58578450 58578450 G C ZNF135 Missense_Mutation p.D224H 0.31 tolerated(0.22) benign(0.004) TCGA-CC-5259-01 19 8387236 8387236 T G RPS28 3'UTR 0.29 TCGA-CC-5259-01 19 8387239 8387239 C T RPS28 3'UTR 0.31 TCGA-CC-5259-01 19 9065780 9065780 A T MUC16 Silent p.T7222T 0.69 TCGA-CC-5259-01 1 110259850 110259850 C A GSTM5 Intron 0.87 TCGA-CC-5259-01 1 144923732 144923732 T A PDE4DIP Silent p.A242A 0.28 TCGA-CC-5259-01 1 153318651 153318651 G T PGLYRP4 Missense_Mutation p.N22K 0.46 tolerated_low_confidence(0.14) benign(0.002) TCGA-CC-5259-01 1 155039354 155039354 G T EFNA4 Missense_Mutation p.A88S 0.34 tolerated(0.53) benign(0.237) TCGA-CC-5259-01 1 157804417 157804417 G A CD5L Silent p.G166G 0.45 TCGA-CC-5259-01 1 158590172 158590172 G T SPTA1 Missense_Mutation p.P2069T 0.09 deleterious(0.01) probably_damaging(0.914) TCGA-CC-5259-01 1 161495008 161495008 T A HSPA6 Missense_Mutation p.L187Q 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-CC-5259-01 1 17085033 17085033 T A MST1L RNA 0.16 TCGA-CC-5259-01 1 183933105 183933105 G C COLGALT2 Missense_Mutation p.I294M 0.45 deleterious(0.03) benign(0.004) TCGA-CC-5259-01 1 192128370 192128370 G C RGS18 Missense_Mutation p.R47T 0.10 deleterious(0) probably_damaging(0.999) TCGA-CC-5259-01 1 193046176 193046176 T G TROVE2 Missense_Mutation p.F361C 0.41 deleterious(0) probably_damaging(0.975) TCGA-CC-5259-01 1 216073535 216073535 C T USH2A Silent p.S2492S 0.36 TCGA-CC-5259-01 1 241946598 241946598 C T WDR64 Missense_Mutation p.R864C 0.10 deleterious(0) probably_damaging(0.988) TCGA-CC-5259-01 1 242024779 242024779 A G EXO1 Missense_Mutation p.D339G 0.43 deleterious(0.01) probably_damaging(0.978) TCGA-CC-5259-01 1 28657195 28657195 A G MED18 Missense_Mutation p.M8V 0.82 tolerated_low_confidence(1) benign(0) TCGA-CC-5259-01 1 42048714 42048714 C G HIVEP3 Silent p.R585R 0.75 TCGA-CC-5259-01 1 67303300 67303300 T A WDR78 Intron 0.83 TCGA-CC-5259-01 1 75683603 75683603 T G SLC44A5 Silent p.A524A 0.70 TCGA-CC-5259-01 1 75683604 75683604 G T SLC44A5 Missense_Mutation p.A524E 0.70 deleterious(0) probably_damaging(0.93) TCGA-CC-5259-01 20 17639516 17639516 T A RRBP1 Intron 0.47 TCGA-CC-5259-01 20 25450673 25450673 C G NINL Missense_Mutation p.V1103L 0.04 tolerated(0.22) benign(0.017) TCGA-CC-5259-01 20 32207387 32207387 G T CBFA2T2 Missense_Mutation p.R171L 0.45 deleterious(0) probably_damaging(0.996) TCGA-CC-5259-01 20 43727336 43727336 C T KCNS1 Missense_Mutation p.G26E 0.32 tolerated_low_confidence(0.88) benign(0.007) TCGA-CC-5259-01 20 44003518 44003518 A G TP53TG5 Intron 0.48 TCGA-CC-5259-01 20 49621256 49621256 T C KCNG1 Missense_Mutation p.I288V 0.44 tolerated(0.63) benign(0.012) TCGA-CC-5259-01 20 52645509 52645509 C T BCAS1 Missense_Mutation p.D49N 0.50 deleterious(0.05) probably_damaging(0.975) TCGA-CC-5259-01 20 58519115 58519115 T A FAM217B Silent p.A39A 0.33 TCGA-CC-5259-01 20 61467861 61467861 A T COL9A3 Missense_Mutation p.E527V 0.34 deleterious(0) probably_damaging(0.996) TCGA-CC-5259-01 21 33954534 33954534 G A AP000275.65 Silent p.H286H 0.46 TCGA-CC-5259-01 21 44838314 44838314 G A SIK1 Missense_Mutation p.P524S 0.70 tolerated(0.4) benign(0.091) TCGA-CC-5259-01 22 20458548 20458548 G C RIMBP3 Silent p.L918L 0.06 TCGA-CC-5259-01 22 22724444 22724444 A T IGLV7-46 Missense_Mutation p.S114C 0.81 TCGA-CC-5259-01 22 31799026 31799026 G T DRG1 Missense_Mutation p.A60S 0.04 tolerated(0.45) benign(0.011) TCGA-CC-5259-01 22 41863491 41863491 A G PHF5A Silent p.D68D 0.71 TCGA-CC-5259-01 22 42209427 42209427 C T CCDC134 Missense_Mutation p.P157L 0.79 tolerated(0.05) benign(0.116) TCGA-CC-5259-01 2 101670763 101670763 G A TBC1D8 Silent p.A131A 0.17 TCGA-CC-5259-01 2 132287416 132287416 T A CCDC74A Intron 0.17 TCGA-CC-5259-01 2 136872834 136872834 T A CXCR4 Missense_Mutation p.I226F 0.68 deleterious(0) probably_damaging(0.999) TCGA-CC-5259-01 2 152418677 152418677 A C NEB Missense_Mutation p.W6315G 0.08 probably_damaging(1) TCGA-CC-5259-01 2 172700890 172700890 G A SLC25A12 Nonsense_Mutation p.Q152* 0.64 TCGA-CC-5259-01 2 209271708 209271708 T A PTH2R 5'UTR 0.20 TCGA-CC-5259-01 2 209345847 209345847 G - PTH2R Frame_Shift_Del p.E346Rfs*25 0.37 TCGA-CC-5259-01 2 21228347 21228347 G C APOB Missense_Mutation p.T3798R 0.21 probably_damaging(0.997) TCGA-CC-5259-01 2 219225314 219225314 G T C2orf62 Nonsense_Mutation p.E132* 0.65 TCGA-CC-5259-01 2 222365784 222365784 C T EPHA4 Missense_Mutation p.R311Q 0.22 tolerated(0.24) benign(0.028) TCGA-CC-5259-01 2 230672989 230672989 T A TRIP12 Missense_Mutation p.Y725F 0.16 tolerated(0.15) benign(0.298) TCGA-CC-5259-01 2 230787284 230787284 C G FBXO36 Missense_Mutation p.P19A 0.21 deleterious(0.03) probably_damaging(0.922) TCGA-CC-5259-01 2 231937074 231937074 G T PSMD1 Missense_Mutation p.A276S 0.16 tolerated(0.53) benign(0.001) TCGA-CC-5259-01 2 36691797 36691797 T C CRIM1 Silent p.N330N 0.31 TCGA-CC-5259-01 2 39164550 39164550 C T ARHGEF33 Missense_Mutation p.H214Y 0.09 tolerated(0.22) benign(0.007) TCGA-CC-5259-01 3 111603108 111603109 CT G PHLDB2 Frame_Shift_Del p.L62Afs*24 0.37 TCGA-CC-5259-01 3 111794166 111794166 A G TMPRSS7 Splice_Site p.X469_splice 0.05 TCGA-CC-5259-01 3 14555217 14555217 G T GRIP2 RNA 0.28 TCGA-CC-5259-01 3 148927024 148927024 T A CP Missense_Mutation p.D252V 0.50 tolerated(0.16) benign(0.088) TCGA-CC-5259-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.44 deleterious(0.04) probably_damaging(0.96) TCGA-CC-5259-01 3 197023346 197023346 T A DLG1 Missense_Mutation p.T8S 0.42 deleterious(0.02) benign(0.253) TCGA-CC-5259-01 3 19920998 19920998 A T EFHB 3'UTR 0.53 TCGA-CC-5259-01 3 38888226 38888226 A T SCN11A Missense_Mutation p.S1779T 0.53 tolerated_low_confidence(0.19) benign(0.043) TCGA-CC-5259-01 3 49006060 49006060 G C ARIH2 Missense_Mutation p.R211T 0.14 tolerated(0.12) benign(0.258) TCGA-CC-5259-01 4 103722609 103722609 A C UBE2D3 Splice_Site p.X104_splice 0.75 TCGA-CC-5259-01 4 123978434 123978445 AAAGGGGCAGGT - SPATA5 Splice_Site p.X736_splice 0.33 TCGA-CC-5259-01 4 153273838 153273838 A T FBXW7 Intron 0.27 TCGA-CC-5259-01 4 155243495 155243495 A T DCHS2 Silent p.V933V 0.43 TCGA-CC-5259-01 4 183601698 183601698 G A TENM3 Missense_Mutation p.A548T 0.29 tolerated(0.19) possibly_damaging(0.821) TCGA-CC-5259-01 4 3251094 3251094 G T MSANTD1 Missense_Mutation p.A49S 0.32 tolerated(0.26) probably_damaging(0.979) TCGA-CC-5259-01 4 44177224 44177224 A T KCTD8 Missense_Mutation p.D335E 0.47 tolerated(1) benign(0) TCGA-CC-5259-01 4 65274943 65274943 C T TECRL Missense_Mutation p.A43T 0.10 tolerated_low_confidence(0.11) benign(0.016) TCGA-CC-5259-01 5 118469442 118469442 T A DMXL1 Missense_Mutation p.L608Q 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-CC-5259-01 5 127714494 127714494 G T FBN2 Missense_Mutation p.Q565K 0.35 tolerated(0.15) possibly_damaging(0.718) TCGA-CC-5259-01 5 139892497 139892497 A G ANKHD1 Missense_Mutation p.I1397V 0.62 benign(0.031) TCGA-CC-5259-01 5 140232551 140232551 C A PCDHA9 Intron 0.30 TCGA-CC-5259-01 5 16761637 16761637 C A MYO10 Missense_Mutation p.G559C 0.54 deleterious(0) probably_damaging(1) TCGA-CC-5259-01 5 178505747 178505747 C A ZNF354C Missense_Mutation p.T105K 0.10 tolerated(0.66) benign(0.007) TCGA-CC-5259-01 5 38350697 38350697 G C EGFLAM Missense_Mutation p.R129P 0.31 deleterious_low_confidence(0) possibly_damaging(0.796) TCGA-CC-5259-01 6 10818123 10818123 C A MAK Nonsense_Mutation p.E80* 0.36 TCGA-CC-5259-01 6 137519200 137519200 T A IFNGR1 Nonsense_Mutation p.R480* 0.55 TCGA-CC-5259-01 6 160184055 160184055 G T ACAT2 Nonsense_Mutation p.E54* 0.25 TCGA-CC-5259-01 6 166571945 166571945 G A T Missense_Mutation p.P389L 0.31 tolerated(0.14) benign(0.029) TCGA-CC-5259-01 6 28134788 28134788 C A ZNF192P1 RNA 0.18 TCGA-CC-5259-01 6 28478622 28478622 G A GPX6 Silent p.N49N 0.46 TCGA-CC-5259-01 6 33411166 33411166 G C SYNGAP1 Missense_Mutation p.G946A 0.57 tolerated(0.74) possibly_damaging(0.454) TCGA-CC-5259-01 6 46726685 46726685 G A ANKRD66 3'UTR 0.54 TCGA-CC-5259-01 6 48036326 48036326 C G PTCHD4 Silent p.V22V 0.48 TCGA-CC-5259-01 6 54186162 54186162 C T TINAG Nonsense_Mutation p.Q163* 0.59 TCGA-CC-5259-01 6 73879546 73879546 C T KCNQ5 Missense_Mutation p.P535S 0.51 tolerated(0.06) benign(0.377) TCGA-CC-5259-01 7 103292164 103292164 G T RELN Silent p.I612I 0.56 TCGA-CC-5259-01 7 141537672 141537672 G T PRSS37 Missense_Mutation p.Q140K 0.45 tolerated(0.37) benign(0.076) TCGA-CC-5259-01 7 2968238 2968238 T C CARD11 Missense_Mutation p.H583R 0.29 tolerated(0.43) benign(0.04) TCGA-CC-5259-01 7 45688359 45688359 T A ADCY1 Missense_Mutation p.C371S 0.41 tolerated(0.1) possibly_damaging(0.843) TCGA-CC-5259-01 7 45717579 45717579 T A ADCY1 Missense_Mutation p.L573I 0.34 tolerated(1) benign(0.005) TCGA-CC-5259-01 7 86416221 86416221 C T GRM3 Silent p.R371R 0.40 TCGA-CC-5259-01 7 92732475 92732475 C A SAMD9 Missense_Mutation p.C979F 0.38 tolerated(0.07) benign(0.043) TCGA-CC-5259-01 8 107719001 107719001 G T OXR1 Nonsense_Mutation p.E419* 0.11 TCGA-CC-5259-01 8 116599692 116599692 T A TRPS1 Missense_Mutation p.I746L 0.18 tolerated_low_confidence(1) benign(0.003) TCGA-CC-5259-01 8 22021619 22021619 A T SFTPC Intron 0.57 TCGA-CC-5259-01 8 22146165 22146165 T C PIWIL2 Silent p.N324N 0.55 TCGA-CC-5259-01 8 39873103 39873103 C A IDO2 Silent p.I415I 0.43 TCGA-CC-5259-01 8 48815178 48815178 T A PRKDC Nonsense_Mutation p.K1074* 0.48 TCGA-CC-5259-01 8 52322116 52322116 G A PXDNL Missense_Mutation p.R690W 0.51 tolerated(0.06) benign(0.015) TCGA-CC-5259-01 8 53540730 53540730 T G RB1CC1 Splice_Site p.X1500_splice 0.28 TCGA-CC-5259-01 8 61193683 61193683 T A CA8 Missense_Mutation p.E8D 0.45 tolerated_low_confidence(0.05) possibly_damaging(0.636) TCGA-CC-5259-01 8 69009253 69009253 G A PREX2 Silent p.E790E 0.03 TCGA-CC-5259-01 8 69104009 69104009 G T PREX2 Missense_Mutation p.A1467S 0.06 deleterious(0) benign(0.112) TCGA-CC-5259-01 8 82371529 82371529 C A FABP9 Silent p.P39P 0.23 TCGA-CC-5259-01 9 127734043 127734043 T A SCAI Missense_Mutation p.S517C 0.47 deleterious(0.02) benign(0.321) TCGA-CC-5259-01 9 131859581 131859581 T A CRAT Missense_Mutation p.K492M 0.42 deleterious(0) probably_damaging(0.991) TCGA-CC-5259-01 9 139749459 139749459 C T MAMDC4 Missense_Mutation p.P365L 0.50 tolerated(0.11) benign(0.003) TCGA-CC-5259-01 9 71491629 71491629 A T PIP5K1B Silent p.P79P 0.44 TCGA-CC-5259-01 9 91609135 91609135 A T C9orf47 3'UTR 0.48 TCGA-CC-5259-01 9 91617958 91617958 T A S1PR3 3'UTR 0.49 TCGA-CC-5259-01 X 100880696 100880696 A - ARMCX3 Frame_Shift_Del p.N243Ifs*22 0.29 TCGA-CC-5259-01 X 134989876 134989876 C A SAGE1 Missense_Mutation p.H345Q 0.41 tolerated(0.3) benign(0.001) TCGA-CC-5259-01 X 135047109 135047109 G C MMGT1 3'UTR 0.31 TCGA-CC-5259-01 X 13645318 13645318 G C EGFL6 Missense_Mutation p.E493Q 0.46 deleterious(0.01) possibly_damaging(0.901) TCGA-CC-5259-01 X 140983104 140983104 T C MAGEC3 Missense_Mutation p.L320P 0.38 tolerated(0.15) benign(0.127) TCGA-CC-5259-01 X 150912895 150912895 G T CNGA2 Missense_Mutation p.M640I 0.08 tolerated(0.12) benign(0) TCGA-CC-5259-01 X 152018893 152018893 A G NSDHL Missense_Mutation p.N65D 0.46 tolerated(0.11) possibly_damaging(0.735) TCGA-CC-5259-01 X 17819079 17819079 C T RAI2 Missense_Mutation p.R351Q 0.08 deleterious(0.01) unknown(0) TCGA-CC-5259-01 X 26157856 26157856 A T MAGEB18 Nonsense_Mutation p.K252* 0.31 TCGA-CC-5259-01 X 39922123 39922123 T A BCOR Missense_Mutation p.Y1350F 0.35 tolerated(0.09) benign(0.004) TCGA-CC-5259-01 X 49126933 49126933 C T PPP1R3F Missense_Mutation p.R201C 0.37 tolerated_low_confidence(0.12) probably_damaging(0.97) TCGA-CC-5259-01 X 54780134 54780134 A T ITIH6 Missense_Mutation p.L1101Q 0.47 deleterious(0) possibly_damaging(0.879) TCGA-CC-5259-01 X 70467743 70467743 C T ZMYM3 Silent p.L663L 0.32 TCGA-CC-5259-01 X 70617219 70617219 G A TAF1 Missense_Mutation p.E1195K 0.38 tolerated(0.16) benign(0.304) TCGA-CC-5259-01 X 77244075 77244075 T C ATP7A Missense_Mutation p.L153P 0.37 tolerated(0.33) benign(0.001) TCGA-CC-5259-01 X 78427717 78427717 T A GPR174 3'UTR 0.72 TCGA-CC-5259-01 X 83389790 83389790 C T RPS6KA6 Missense_Mutation p.D216N 0.33 deleterious(0) probably_damaging(0.989) TCGA-CC-5259-01 X 86873049 86873049 C A KLHL4 Missense_Mutation p.P281H 0.45 deleterious(0) probably_damaging(0.945) TCGA-CC-5260-01 10 129901092 129901092 T A MKI67 Silent p.G3004G 0.47 TCGA-CC-5260-01 10 134679551 134679551 G A TTC40 Missense_Mutation p.S1623L 0.45 deleterious(0) possibly_damaging(0.579) TCGA-CC-5260-01 10 55839135 55839135 G A PCDH15 Missense_Mutation p.R683C 0.41 deleterious(0) probably_damaging(0.978) TCGA-CC-5260-01 11 105881677 105881677 A C MSANTD4 5'UTR 0.33 TCGA-CC-5260-01 11 124310394 124310394 C A OR8B8 Missense_Mutation p.E196D 0.24 deleterious_low_confidence(0.02) benign(0.046) TCGA-CC-5260-01 11 214285 214285 C T RIC8A Nonsense_Mutation p.Q517* 0.08 TCGA-CC-5260-01 11 30937205 30937205 T C DCDC1 Missense_Mutation p.Y1169C 0.29 deleterious(0) possibly_damaging(0.878) TCGA-CC-5260-01 11 36598366 36598366 T - RAG1 3'UTR 0.15 TCGA-CC-5260-01 11 55872687 55872687 C T OR8H2 Missense_Mutation p.H57Y 0.11 deleterious(0.01) benign(0.167) TCGA-CC-5260-01 11 58916308 58916308 G A FAM111A Splice_Site 0.17 TCGA-CC-5260-01 11 67957441 67957441 T A SUV420H1 Missense_Mutation p.T35S 0.26 tolerated(0.99) benign(0.001) TCGA-CC-5260-01 11 71819726 71819726 C A LRTOMT Missense_Mutation p.L211M 0.24 tolerated(0.56) benign(0.271) TCGA-CC-5260-01 11 85712084 85712084 A G PICALM Silent p.A337A 0.27 TCGA-CC-5260-01 11 9610234 9610234 T C WEE1 3'UTR 0.18 TCGA-CC-5260-01 12 108686473 108686473 G A CMKLR1 Silent p.N89N 0.30 TCGA-CC-5260-01 12 3702274 3702274 G A PRMT8 Missense_Mutation p.D371N 0.13 deleterious(0.02) benign(0.369) TCGA-CC-5260-01 12 51863457 51863457 A C SLC4A8 Missense_Mutation p.Y470S 0.09 deleterious(0) possibly_damaging(0.541) TCGA-CC-5260-01 12 72057379 72057379 T A ZFC3H1 Silent p.A4A 0.34 TCGA-CC-5260-01 13 61987587 61987587 C T PCDH20 Silent p.S215S 0.18 TCGA-CC-5260-01 14 57075883 57075883 C G TMEM260 Silent p.P232P 0.21 TCGA-CC-5260-01 14 77494714 77494714 A G IRF2BPL 5'UTR 0.37 TCGA-CC-5260-01 15 42110257 42110257 A - MAPKBP1 Frame_Shift_Del p.Q658Rfs*52 0.20 TCGA-CC-5260-01 15 79063584 79063584 C T ADAMTS7 Missense_Mutation p.G813D 0.21 tolerated(1) benign(0) TCGA-CC-5260-01 16 68856129 68856129 G A CDH1 Splice_Site p.X646_splice 0.18 TCGA-CC-5260-01 16 88098920 88098920 C T BANP Silent p.F442F 0.17 TCGA-CC-5260-01 17 48244792 48244792 G T SGCA Missense_Mutation p.R34L 0.24 tolerated(0.16) benign(0.055) TCGA-CC-5260-01 18 52556472 52556472 C A RAB27B Missense_Mutation p.T162K 0.32 deleterious(0) probably_damaging(0.999) TCGA-CC-5260-01 19 38610466 38610466 C T SIPA1L3 Silent p.L938L 0.45 TCGA-CC-5260-01 19 44223208 44223208 G A IRGC Silent p.V166V 0.11 TCGA-CC-5260-01 19 8661249 8661249 C T ADAMTS10 Missense_Mutation p.V378I 0.30 tolerated(1) benign(0.003) TCGA-CC-5260-01 1 109339272 109339272 T A STXBP3 Missense_Mutation p.I427N 0.29 deleterious(0.02) possibly_damaging(0.583) TCGA-CC-5260-01 1 120928480 120928480 C T FCGR1B Intron 0.25 TCGA-CC-5260-01 1 152732812 152732812 C T KPRP Missense_Mutation p.R250W 0.31 deleterious(0.05) benign(0.008) TCGA-CC-5260-01 1 158325699 158325699 C T CD1E Silent p.Y236Y 0.05 TCGA-CC-5260-01 1 20005787 20005787 G A HTR6 Missense_Mutation p.A417T 0.36 tolerated_low_confidence(0.7) benign(0) TCGA-CC-5260-01 1 200378483 200378483 G A ZNF281 Silent p.S117S 0.08 TCGA-CC-5260-01 1 39907974 39907974 G T MACF1 Missense_Mutation p.E4251D 0.32 benign(0.149) TCGA-CC-5260-01 1 54520147 54520148 - T TCEANC2 Frame_Shift_Ins p.K18Ifs*14 0.26 TCGA-CC-5260-01 1 57161707 57161707 G A PRKAA2 Silent p.T221T 0.06 TCGA-CC-5260-01 21 46066650 46066650 C G KRTAP10-11 Missense_Mutation p.S92C 0.08 deleterious(0.04) unknown(0) TCGA-CC-5260-01 2 122485225 122485225 T C NIFK 3'UTR 0.35 TCGA-CC-5260-01 2 162274553 162274553 A T TBR1 Intron 0.36 TCGA-CC-5260-01 2 175624066 175624066 A T CHRNA1 Missense_Mutation p.L76Q 0.31 deleterious(0) probably_damaging(0.994) TCGA-CC-5260-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.30 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-CC-5260-01 2 217525341 217525341 C T IGFBP2 Silent p.N168N 0.08 TCGA-CC-5260-01 2 219423315 219423315 T - USP37 Frame_Shift_Del p.K21Sfs*10 0.21 TCGA-CC-5260-01 2 44053584 44053584 T G ABCG5 Missense_Mutation p.E237D 0.32 tolerated(0.21) benign(0.128) TCGA-CC-5260-01 2 55772122 55772124 AAG - CCDC104 In_Frame_Del p.E338del 0.27 TCGA-CC-5260-01 2 88082657 88082660 TAGA - RGPD2 Frame_Shift_Del p.K1296Lfs*5 0.14 TCGA-CC-5260-01 3 111797619 111797619 C T TMPRSS7 Missense_Mutation p.A626V 0.27 deleterious(0) possibly_damaging(0.606) TCGA-CC-5260-01 3 122629075 122629075 G A SEMA5B Missense_Mutation p.T1178M 0.33 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-CC-5260-01 3 143704410 143704410 C T C3orf58 Missense_Mutation p.P228L 0.27 deleterious(0) probably_damaging(1) TCGA-CC-5260-01 3 38830477 38830477 A G SCN10A Missense_Mutation p.M147T 0.11 deleterious(0) possibly_damaging(0.756) TCGA-CC-5260-01 3 52437456 52437456 C - BAP1 Frame_Shift_Del p.V569Cfs*2 0.34 TCGA-CC-5260-01 4 10446101 10446101 A T ZNF518B Missense_Mutation p.L618I 0.27 deleterious(0.03) benign(0.125) TCGA-CC-5260-01 4 145039884 145039884 T A GYPA Missense_Mutation p.H85L 0.23 deleterious(0.03) benign(0.013) TCGA-CC-5260-01 5 132203343 132203343 G C UQCRQ 3'UTR 0.11 TCGA-CC-5260-01 5 137681062 137681062 C T FAM53C Missense_Mutation p.R229C 0.28 deleterious(0) probably_damaging(0.942) TCGA-CC-5260-01 5 174870477 174870477 T A DRD1 5'UTR 0.36 TCGA-CC-5260-01 6 135510936 135510936 C T MYB Missense_Mutation p.T74I 0.09 deleterious(0) probably_damaging(0.993) TCGA-CC-5260-01 6 30231920 30231920 G A HCG17 Intron 0.21 TCGA-CC-5260-01 6 88299863 88299863 G A ORC3 5'UTR 0.53 TCGA-CC-5260-01 7 139164446 139164446 G A KLRG2 Missense_Mutation p.A311V 0.19 tolerated(0.23) benign(0.026) TCGA-CC-5260-01 7 150934562 150934562 G A CHPF2 Missense_Mutation p.V372M 0.27 deleterious(0.02) probably_damaging(0.934) TCGA-CC-5260-01 7 19157186 19157186 G T TWIST1 5'UTR 0.19 TCGA-CC-5260-01 7 73246325 73246325 C A CLDN4 3'UTR 0.22 TCGA-CC-5260-01 8 12580550 12580550 T C LONRF1 3'UTR 0.08 TCGA-CC-5260-01 8 37756823 37756823 T A RAB11FIP1 Missense_Mutation p.Q46L 0.39 deleterious(0) possibly_damaging(0.787) TCGA-CC-5260-01 8 89081578 89081578 T C MMP16 Intron 0.15 TCGA-CC-5260-01 8 89081579 89081579 C A MMP16 Intron 0.15 TCGA-CC-5260-01 8 89180036 89180036 C T MMP16 Missense_Mutation p.G191S 0.25 deleterious(0) probably_damaging(1) TCGA-CC-5260-01 8 9627614 9627614 A T TNKS Splice_Site p.X1247_splice 0.54 TCGA-CC-5260-01 9 112918686 112918686 G A PALM2-AKAP2 Missense_Mutation p.G1028E 0.10 deleterious(0.03) probably_damaging(1) TCGA-CC-5260-01 9 123177407 123177407 C T CDK5RAP2 Missense_Mutation p.R1403Q 0.11 deleterious(0) possibly_damaging(0.885) TCGA-CC-5260-01 9 128230302 128230302 T C MAPKAP1 Missense_Mutation p.I432V 0.08 tolerated(0.28) benign(0.008) TCGA-CC-5260-01 9 37518350 37518350 C T FBXO10 Silent p.V762V 0.09 TCGA-CC-5260-01 9 43822776 43822776 G T CNTNAP3B Missense_Mutation p.A444S 0.18 tolerated(0.3) benign(0.196) TCGA-CC-5260-01 9 66468976 66468976 G A RP11-262H14.1 RNA 0.24 TCGA-CC-5260-01 9 738429 738429 G A KANK1 Missense_Mutation p.G1160S 0.33 deleterious(0.02) probably_damaging(0.962) TCGA-CC-5260-01 9 75355074 75355074 T A TMC1 Silent p.L134L 0.24 TCGA-CC-5260-01 9 91609053 91609053 C A C9orf47 3'UTR 0.27 TCGA-CC-5260-01 X 30746904 30746904 A T GK 3'UTR 0.25 TCGA-CC-5260-01 X 41586732 41586732 T A GPR82 Missense_Mutation p.F151L 0.13 deleterious(0) possibly_damaging(0.901) TCGA-CC-5260-01 X 53409455 53409455 T A SMC1A Missense_Mutation p.K1086M 0.26 deleterious(0) probably_damaging(1) TCGA-CC-5260-01 X 5821679 5821679 T C NLGN4X Missense_Mutation p.D347G 0.31 deleterious(0.02) probably_damaging(0.996) TCGA-CC-5260-01 X 73641483 73641483 A T SLC16A2 Missense_Mutation p.Q4L 0.26 tolerated_low_confidence(0.13) benign(0.069) TCGA-CC-5262-01 10 103550822 103550822 A T MGEA5 Missense_Mutation p.L762H 0.22 deleterious(0.03) benign(0.01) TCGA-CC-5262-01 10 121556404 121556404 C T INPP5F Missense_Mutation p.R283C 0.21 deleterious(0) probably_damaging(0.956) TCGA-CC-5262-01 10 123843041 123843041 G T TACC2 Silent p.P342P 0.23 TCGA-CC-5262-01 10 72358776 72358776 G T PRF1 Nonsense_Mutation p.S234* 0.14 TCGA-CC-5262-01 10 72468471 72468471 C G ADAMTS14 Missense_Mutation p.D269E 0.26 deleterious(0.01) probably_damaging(1) TCGA-CC-5262-01 11 107518278 107518278 C - ELMOD1 Frame_Shift_Del p.P169Lfs*47 0.19 TCGA-CC-5262-01 11 125448940 125448940 G T EI24 Missense_Mutation p.L179F 0.09 deleterious(0) probably_damaging(0.927) TCGA-CC-5262-01 11 28116264 28116264 T G KIF18A Missense_Mutation p.M137L 0.16 deleterious(0.04) benign(0.032) TCGA-CC-5262-01 11 47600412 47600412 C A KBTBD4 Intron 0.14 TCGA-CC-5262-01 12 105538197 105538197 C A KIAA1033 Missense_Mutation p.P715T 0.17 deleterious(0) possibly_damaging(0.853) TCGA-CC-5262-01 12 14766049 14766049 G T GUCY2C 3'UTR 0.15 TCGA-CC-5262-01 12 14943652 14943652 T C WBP11 Silent p.V349V 0.18 TCGA-CC-5262-01 12 33592365 33592365 C T SYT10 Nonsense_Mutation p.W31* 0.10 TCGA-CC-5262-01 12 42858905 42858905 C G PRICKLE1 Missense_Mutation p.D311H 0.26 deleterious(0) probably_damaging(1) TCGA-CC-5262-01 12 56742939 56742954 TCCCCTACCTGAAGGT - STAT2 Splice_Site p.X478_splice 0.14 TCGA-CC-5262-01 12 9027104 9027104 C T A2ML1 Silent p.V1435V 0.26 TCGA-CC-5262-01 13 25743761 25743761 T C AMER2 Missense_Mutation p.D666G 0.26 tolerated(0.07) probably_damaging(0.958) TCGA-CC-5262-01 13 28794510 28794510 C T PAN3 Missense_Mutation p.A332V 0.21 tolerated(0.05) possibly_damaging(0.551) TCGA-CC-5262-01 14 20612277 20612277 G A OR4N5 Missense_Mutation p.R128Q 0.24 tolerated(0.16) benign(0.006) TCGA-CC-5262-01 14 24905604 24905604 T G KHNYN Missense_Mutation p.F566V 0.09 deleterious(0) probably_damaging(0.998) TCGA-CC-5262-01 14 86091537 86091537 A C FLRT2 3'UTR 0.18 TCGA-CC-5262-01 15 58902701 58902701 C A ADAM10 Missense_Mutation p.C607F 0.20 deleterious(0) probably_damaging(1) TCGA-CC-5262-01 15 75983035 75983035 G A CSPG4 Missense_Mutation p.S124L 0.22 tolerated(0.09) benign(0.013) TCGA-CC-5262-01 15 99251033 99251033 T C IGF1R Missense_Mutation p.Y113H 0.16 tolerated(0.06) probably_damaging(0.991) TCGA-CC-5262-01 15 99459277 99459277 A G IGF1R Missense_Mutation p.N638S 0.13 deleterious(0) probably_damaging(0.967) TCGA-CC-5262-01 15 99796167 99796167 C T LRRC28 Missense_Mutation p.A2V 0.11 deleterious_low_confidence(0.02) benign(0.273) TCGA-CC-5262-01 16 21031159 21031159 C T DNAH3 Missense_Mutation p.E1937K 0.21 tolerated(0.87) benign(0.097) TCGA-CC-5262-01 16 30536127 30536127 G C ZNF768 Missense_Mutation p.A445G 0.21 tolerated_low_confidence(0.11) possibly_damaging(0.633) TCGA-CC-5262-01 16 30939817 30939817 G A FBXL19 Silent p.K239K 0.17 TCGA-CC-5262-01 16 732214 732214 T C STUB1 Missense_Mutation p.M240T 0.37 deleterious(0) probably_damaging(1) TCGA-CC-5262-01 17 15211984 15211984 A T TEKT3 Missense_Mutation p.L418Q 0.18 tolerated(0.19) possibly_damaging(0.739) TCGA-CC-5262-01 17 30696893 30696893 T C ZNF207 3'UTR 0.12 TCGA-CC-5262-01 17 40696106 40696106 G A NAGLU Silent p.Q694Q 0.25 TCGA-CC-5262-01 17 42275454 42275454 G C ATXN7L3 5'Flank 0.07 TCGA-CC-5262-01 17 48557383 48557383 C G RSAD1 Missense_Mutation p.P138A 0.16 tolerated(0.32) benign(0.002) TCGA-CC-5262-01 17 5433881 5433881 A G NLRP1 Missense_Mutation p.V1147A 0.15 tolerated(0.06) possibly_damaging(0.85) TCGA-CC-5262-01 17 60744895 60744895 G T MRC2 Splice_Site p.X373_splice 0.18 TCGA-CC-5262-01 17 61788154 61788154 C A STRADA Missense_Mutation p.V131L 0.18 tolerated(1) benign(0.005) TCGA-CC-5262-01 17 62018994 62018994 G T SCN4A Missense_Mutation p.P1550T 0.24 deleterious(0) probably_damaging(0.978) TCGA-CC-5262-01 17 72350550 72350550 C A KIF19 Missense_Mutation p.A853D 0.19 tolerated(0.18) benign(0.09) TCGA-CC-5262-01 17 7404886 7404886 A G POLR2A Silent p.P729P 0.34 TCGA-CC-5262-01 17 7404887 7404887 G T POLR2A Missense_Mutation p.G730W 0.35 probably_damaging(1) TCGA-CC-5262-01 17 78704429 78704429 G A RPTOR Missense_Mutation p.V193I 0.13 deleterious(0.01) probably_damaging(0.992) TCGA-CC-5262-01 18 43532588 43532588 T C EPG5 Missense_Mutation p.K344E 0.16 deleterious(0.01) benign(0.051) TCGA-CC-5262-01 18 49867099 49867099 C A DCC 5'UTR 0.17 TCGA-CC-5262-01 19 15297927 15297927 G T NOTCH3 Missense_Mutation p.S610Y 0.23 deleterious(0) benign(0.197) TCGA-CC-5262-01 19 35823581 35823581 T C CD22 Missense_Mutation p.F56L 0.18 tolerated(1) benign(0.001) TCGA-CC-5262-01 19 38378259 38378259 C A WDR87 Nonsense_Mutation p.E1979* 0.19 TCGA-CC-5262-01 19 42797899 42797899 C A CIC Missense_Mutation p.D1317E 0.24 benign(0.001) TCGA-CC-5262-01 19 42797912 42797912 A C CIC Missense_Mutation p.K1322Q 0.21 probably_damaging(0.95) TCGA-CC-5262-01 19 44471487 44471487 A C ZNF221 Silent p.L611L 0.19 TCGA-CC-5262-01 19 4538064 4538064 T C LRG1 Missense_Mutation p.Y311C 0.15 tolerated(0.17) benign(0.009) TCGA-CC-5262-01 19 51537883 51537883 G A KLK12 5'UTR 0.24 TCGA-CC-5262-01 19 54080469 54080469 G T ZNF331 Missense_Mutation p.D219Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-CC-5262-01 19 55175420 55175420 A T LILRB4 Silent p.A93A 0.19 TCGA-CC-5262-01 19 9020787 9020787 C A MUC16 Missense_Mutation p.G12439C 0.22 probably_damaging(0.938) TCGA-CC-5262-01 1 14075887 14075887 G T PRDM2 Missense_Mutation p.W139L 0.18 possibly_damaging(0.558) TCGA-CC-5262-01 1 152692577 152692577 A T C1orf68 Missense_Mutation p.N194Y 0.15 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-CC-5262-01 1 152777757 152777757 T A LCE1C Silent p.G66G 0.13 TCGA-CC-5262-01 1 156770553 156770553 T - PRCC 3'UTR 0.38 TCGA-CC-5262-01 1 158517119 158517119 C A OR6Y1 Missense_Mutation p.M259I 0.17 deleterious(0) benign(0) TCGA-CC-5262-01 1 158576423 158576423 C A OR10Z1 Missense_Mutation p.F65L 0.16 tolerated(0.19) benign(0.012) TCGA-CC-5262-01 1 173570862 173570862 G T SLC9C2 Nonsense_Mutation p.C18* 0.16 TCGA-CC-5262-01 1 173570863 173570863 C T SLC9C2 Missense_Mutation p.C18Y 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CC-5262-01 1 177250229 177250229 T A BRINP2 Missense_Mutation p.F639L 0.14 deleterious(0.03) probably_damaging(0.97) TCGA-CC-5262-01 1 19166175 19166175 T C TAS1R2 Missense_Mutation p.Y813C 0.11 deleterious(0) probably_damaging(0.992) TCGA-CC-5262-01 1 210415122 210415122 C G SERTAD4 Missense_Mutation p.P171A 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-CC-5262-01 1 214501025 214501025 G T SMYD2 Silent p.L221L 0.36 TCGA-CC-5262-01 1 22222416 22222416 C T HSPG2 Missense_Mutation p.M81I 0.18 benign(0.02) TCGA-CC-5262-01 1 224564920 224564920 C G CNIH4 3'UTR 0.33 TCGA-CC-5262-01 1 228465514 228465514 T C OBSCN Missense_Mutation p.F2701L 0.10 benign(0.292) TCGA-CC-5262-01 1 23697598 23697598 T A C1orf213 3'UTR 0.17 TCGA-CC-5262-01 1 248263522 248263522 C A OR2L13 Missense_Mutation p.P282H 0.14 deleterious(0) probably_damaging(0.992) TCGA-CC-5262-01 1 27099008 27099008 C T ARID1A Nonsense_Mutation p.Q1142* 0.18 TCGA-CC-5262-01 1 34003089 34003089 C T CSMD2 Missense_Mutation p.R3107H 0.24 tolerated(0.13) benign(0.126) TCGA-CC-5262-01 1 34003090 34003090 G T CSMD2 Missense_Mutation p.R3107S 0.24 tolerated(0.75) benign(0.16) TCGA-CC-5262-01 1 44069658 44069658 C T PTPRF Silent p.N945N 0.24 TCGA-CC-5262-01 1 45810698 45810699 - TG TESK2 Frame_Shift_Ins p.E511Mfs*35 0.15 TCGA-CC-5262-01 1 87189994 87189994 A G SH3GLB1 Splice_Site p.X160_splice 0.21 TCGA-CC-5262-01 20 19998024 19998024 G C NAA20 5'UTR 0.17 TCGA-CC-5262-01 20 20013982 20013982 C T NAA20 3'UTR 0.23 TCGA-CC-5262-01 20 45194931 45194931 G T SLC13A3 Missense_Mutation p.F477L 0.12 tolerated(0.73) benign(0.02) TCGA-CC-5262-01 20 57035986 57035986 G T APCDD1L Missense_Mutation p.H456N 0.24 tolerated(0.39) benign(0) TCGA-CC-5262-01 21 33691583 33691583 G A URB1 Silent p.A1912A 0.26 TCGA-CC-5262-01 22 18218256 18218256 T G BID 3'UTR 0.24 TCGA-CC-5262-01 22 18218281 18218281 T C BID 3'UTR 0.25 TCGA-CC-5262-01 22 31979928 31979928 C A SFI1 Missense_Mutation p.P439H 0.19 deleterious(0) probably_damaging(0.927) TCGA-CC-5262-01 22 38382317 38382317 C A SOX10 5'Flank 0.25 TCGA-CC-5262-01 2 108487458 108487458 G A RGPD4 Missense_Mutation p.G1000R 0.14 deleterious(0) probably_damaging(1) TCGA-CC-5262-01 2 118716046 118716046 T G CCDC93 Silent p.L300L 0.20 TCGA-CC-5262-01 2 149247524 149247524 C A MBD5 Missense_Mutation p.N1208K 0.10 tolerated_low_confidence(0.06) unknown(0) TCGA-CC-5262-01 2 1664717 1664717 G T PXDN Silent p.R591R 0.11 TCGA-CC-5262-01 2 171685987 171685987 T G GAD1 Missense_Mutation p.F50V 0.23 tolerated_low_confidence(0.05) benign(0.176) TCGA-CC-5262-01 2 172749745 172749745 A T SLC25A12 Missense_Mutation p.D12E 0.16 deleterious(0.04) benign(0.049) TCGA-CC-5262-01 2 176948182 176948182 G T EVX2 Missense_Mutation p.A108E 0.21 tolerated(0.5) benign(0.01) TCGA-CC-5262-01 2 204354662 204354662 T C RAPH1 Missense_Mutation p.H126R 0.06 benign(0.01) TCGA-CC-5262-01 2 209108305 209108305 T C IDH1 Missense_Mutation p.M182V 0.23 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-CC-5262-01 2 211456588 211456589 - A CPS1 Frame_Shift_Ins p.Q335Tfs*34 0.16 TCGA-CC-5262-01 2 220495017 220495017 C T SLC4A3 Missense_Mutation p.P279S 0.20 tolerated(0.05) possibly_damaging(0.713) TCGA-CC-5262-01 2 234878427 234878427 T A TRPM8 Missense_Mutation p.V705E 0.17 deleterious(0) benign(0.308) TCGA-CC-5262-01 2 33174004 33174004 G C LTBP1 Missense_Mutation p.C186S 0.19 deleterious(0) probably_damaging(0.998) TCGA-CC-5262-01 2 39158314 39158314 C T ARHGEF33 Missense_Mutation p.R143C 0.16 deleterious(0) probably_damaging(0.953) TCGA-CC-5262-01 2 48742128 48742128 T C PPP1R21 3'UTR 0.27 TCGA-CC-5262-01 2 60688381 60688381 G T BCL11A Missense_Mutation p.Q556K 0.15 tolerated(0.08) benign(0.042) TCGA-CC-5262-01 2 75107697 75107697 G T HK2 Splice_Site p.X524_splice 0.15 TCGA-CC-5262-01 2 89521489 89521489 C A IGKV2-28 Missense_Mutation p.G17V 0.08 deleterious(0.05) benign(0.113) TCGA-CC-5262-01 2 89521490 89521490 C T IGKV2-28 Splice_Site p.X17_splice 0.08 TCGA-CC-5262-01 2 95952937 95952937 C T PROM2 Silent p.A717A 0.27 TCGA-CC-5262-01 2 98349771 98349771 C G ZAP70 Missense_Mutation p.P268A 0.09 tolerated(0.08) benign(0.005) TCGA-CC-5262-01 3 134339676 134339676 G A KY Silent p.D169D 0.22 TCGA-CC-5262-01 3 14163506 14163506 C A CHCHD4 5'UTR 0.26 TCGA-CC-5262-01 3 154055824 154055824 C T GPR149 Silent p.E620E 0.10 TCGA-CC-5262-01 3 164906413 164906413 C T SLITRK3 Missense_Mutation p.V736M 0.18 tolerated(0.12) possibly_damaging(0.469) TCGA-CC-5262-01 3 164906414 164906414 G T SLITRK3 Silent p.P735P 0.18 TCGA-CC-5262-01 3 169820663 169820663 T A PHC3 Missense_Mutation p.N843I 0.15 tolerated(0.2) possibly_damaging(0.527) TCGA-CC-5262-01 3 172835457 172835457 A C SPATA16 Missense_Mutation p.V22G 0.21 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-CC-5262-01 3 186915400 186915400 A T RTP1 Missense_Mutation p.T33S 0.18 tolerated_low_confidence(0.87) benign(0.001) TCGA-CC-5262-01 3 192516896 192516896 A T MB21D2 Missense_Mutation p.L252H 0.19 deleterious(0) probably_damaging(0.998) TCGA-CC-5262-01 3 27473077 27473077 A C SLC4A7 Missense_Mutation p.S279A 0.21 tolerated(0.06) benign(0.323) TCGA-CC-5262-01 3 41274899 41274899 G C CTNNB1 Missense_Mutation p.W383C 0.21 deleterious(0) possibly_damaging(0.786) TCGA-CC-5262-01 3 42727555 42727555 G C KLHL40 Missense_Mutation p.A149P 0.18 deleterious(0) probably_damaging(0.995) TCGA-CC-5262-01 3 42787466 42787466 C A CCDC13 Silent p.S258S 0.12 TCGA-CC-5262-01 3 47957722 47957722 T G MAP4 Missense_Mutation p.K532T 0.22 deleterious(0) benign(0.339) TCGA-CC-5262-01 3 57438657 57438657 A G DNAH12 Silent p.N1210N 0.22 TCGA-CC-5262-01 3 57443514 57443514 C T DNAH12 Silent p.K1067K 0.24 TCGA-CC-5262-01 3 64599095 64599095 C G ADAMTS9 Missense_Mutation p.E1094Q 0.22 tolerated(0.34) benign(0.008) TCGA-CC-5262-01 4 146029198 146029198 A G ABCE1 Missense_Mutation p.N74S 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-CC-5262-01 4 152058972 152058972 T A SH3D19 Missense_Mutation p.Y523F 0.21 tolerated(0.32) probably_damaging(0.996) TCGA-CC-5262-01 4 176556173 176556173 G A GPM6A Silent p.A240A 0.18 TCGA-CC-5262-01 4 5578157 5578157 G A EVC2 Silent p.L1028L 0.38 TCGA-CC-5262-01 4 68188 68190 AGA GG Z95704.1 3'Flank 0.33 TCGA-CC-5262-01 4 74920006 74920006 G T PPBPP2 RNA 0.16 TCGA-CC-5262-01 4 8469997 8469997 G A TRMT44 Silent p.A617A 0.07 TCGA-CC-5262-01 4 85707240 85707240 T C WDFY3 Silent p.P1318P 0.18 TCGA-CC-5262-01 5 102494240 102494240 A T PPIP5K2 Missense_Mutation p.E567V 0.20 deleterious(0) probably_damaging(0.979) TCGA-CC-5262-01 5 11385059 11385059 A T CTNND2 Missense_Mutation p.S299T 0.16 tolerated(0.19) benign(0.021) TCGA-CC-5262-01 5 134871402 134871402 C A NEUROG1 5'UTR 0.25 TCGA-CC-5262-01 5 140237567 140237567 G T PCDHA10 Missense_Mutation p.R645L 0.22 deleterious_low_confidence(0.01) benign(0.075) TCGA-CC-5262-01 5 140755534 140755534 G A PCDHGA6 Silent p.T628T 0.19 TCGA-CC-5262-01 5 159686722 159686722 T C CCNJL Missense_Mutation p.R161G 0.19 tolerated(1) benign(0.007) TCGA-CC-5262-01 5 170305242 170305242 G C RANBP17 Missense_Mutation p.G54R 0.19 tolerated(0.13) benign(0.096) TCGA-CC-5262-01 5 60628502 60628502 G T ZSWIM6 Missense_Mutation p.G135C 0.19 tolerated_low_confidence(0.21) unknown(0) TCGA-CC-5262-01 5 94043141 94043141 T G MCTP1 3'UTR 0.19 TCGA-CC-5262-01 6 12749963 12749963 G T PHACTR1 Missense_Mutation p.R64L 0.14 deleterious_low_confidence(0) benign(0.433) TCGA-CC-5262-01 6 146007291 146007291 T G EPM2A Missense_Mutation p.N148T 0.16 tolerated(0.58) benign(0.014) TCGA-CC-5262-01 6 29638975 29638976 - T MOG Intron 0.16 TCGA-CC-5262-01 6 393366 393366 A T IRF4 Nonsense_Mutation p.K72* 0.21 TCGA-CC-5262-01 6 43306777 43306777 T A ZNF318 Silent p.L1653L 0.21 TCGA-CC-5262-01 6 46678165 46678165 G T PLA2G7 Intron 0.13 TCGA-CC-5262-01 6 47846352 47846352 G T PTCHD4 Missense_Mutation p.T743N 0.21 tolerated(0.09) probably_damaging(0.991) TCGA-CC-5262-01 6 49604389 49604389 A G RHAG Missense_Mutation p.I46T 0.23 tolerated(0.77) benign(0) TCGA-CC-5262-01 6 75853093 75853093 T A COL12A1 Nonsense_Mutation p.R1568* 0.15 TCGA-CC-5262-01 6 83904246 83904249 CAAG - RWDD2A Frame_Shift_Del p.Q26Efs*3 0.14 TCGA-CC-5262-01 6 85446949 85446949 G A TBX18 Silent p.T426T 0.15 TCGA-CC-5262-01 6 85446950 85446950 G T TBX18 Missense_Mutation p.T426N 0.16 deleterious(0.04) benign(0.127) TCGA-CC-5262-01 7 107531624 107531624 A G DLD 5'UTR 0.11 TCGA-CC-5262-01 7 123092919 123092919 A T IQUB Missense_Mutation p.F752I 0.20 deleterious(0) probably_damaging(1) TCGA-CC-5262-01 7 128119312 128119312 T G METTL2B Silent p.P101P 0.18 TCGA-CC-5262-01 7 134653182 134653182 A G CALD1 3'UTR 0.27 TCGA-CC-5262-01 7 154862969 154862969 C T HTR5A-AS1 Silent p.S15S 0.21 TCGA-CC-5262-01 7 18833076 18833076 G A HDAC9 Splice_Site p.X774_splice 0.19 TCGA-CC-5262-01 7 22533400 22533400 T A STEAP1B Missense_Mutation p.Q47L 0.20 deleterious_low_confidence(0.03) benign(0.05) TCGA-CC-5262-01 7 31146160 31146160 C A ADCYAP1R1 Nonsense_Mutation p.Y451* 0.08 TCGA-CC-5262-01 7 94947702 94947702 T G PON1 Silent p.T26T 0.18 TCGA-CC-5262-01 7 96639126 96639126 A T DLX6 Missense_Mutation p.N217Y 0.13 deleterious(0) probably_damaging(0.986) TCGA-CC-5262-01 8 110432768 110432768 C A PKHD1L1 Missense_Mutation p.P849H 0.33 deleterious(0) probably_damaging(0.924) TCGA-CC-5262-01 8 122627257 122627257 A T HAS2 Missense_Mutation p.W251R 0.16 deleterious(0) probably_damaging(0.995) TCGA-CC-5262-01 8 133090141 133090141 C T HHLA1 Missense_Mutation p.A371T 0.10 tolerated(0.19) benign(0.012) TCGA-CC-5262-01 8 142445230 142445230 G A PTP4A3 3'Flank 0.17 TCGA-CC-5262-01 8 144812668 144812668 G A FAM83H Missense_Mutation p.R29C 0.38 deleterious(0) probably_damaging(1) TCGA-CC-5262-01 8 23002148 23002148 C A TNFRSF10D Missense_Mutation p.V257F 0.17 tolerated(0.06) benign(0.035) TCGA-CC-5262-01 8 23712004 23712004 C T STC1 Silent p.L11L 0.24 TCGA-CC-5262-01 8 52366111 52366111 G T PXDNL Missense_Mutation p.T406N 0.29 tolerated(0.1) benign(0.014) TCGA-CC-5262-01 8 57876515 57876515 G C IMPAD1 Missense_Mutation p.A306G 0.21 deleterious(0) probably_damaging(1) TCGA-CC-5262-01 8 71068895 71068895 T C NCOA2 Missense_Mutation p.M569V 0.16 tolerated(0.57) benign(0.001) TCGA-CC-5262-01 8 96166845 96166845 T G PLEKHF2 Missense_Mutation p.F191L 0.17 deleterious(0.03) benign(0.033) TCGA-CC-5262-01 9 104124656 104124656 G C BAAT 3'UTR 0.20 TCGA-CC-5262-01 9 135975401 135975401 T C RALGDS Intron 0.33 TCGA-CC-5262-01 9 19325935 19325935 A G DENND4C Splice_Site p.X652_splice 0.18 TCGA-CC-5262-01 9 32418350 32418350 A G ACO1 Missense_Mutation p.M167V 0.16 tolerated(0.44) benign(0.012) TCGA-CC-5262-01 9 33798477 33798477 C G PRSS3 Intron 0.20 TCGA-CC-5262-01 9 38596174 38596174 G T ANKRD18A Nonsense_Mutation p.S388* 0.19 TCGA-CC-5262-01 X 119505028 119505028 G T ATP1B4 Missense_Mutation p.W175C 0.37 deleterious(0) probably_damaging(1) TCGA-CC-5262-01 X 40572166 40572166 C T MED14 Missense_Mutation p.D261N 0.40 tolerated(0.1) benign(0.011) TCGA-CC-5262-01 X 46844301 46844301 A G JADE3 Silent p.K2K 0.33 TCGA-CC-5262-01 Y 22941543 22941543 C T RPS4Y2 Silent p.V227V 0.42 TCGA-CC-5263-01 10 27459791 27459791 A T MASTL Missense_Mutation p.M635L 0.34 tolerated(0.49) benign(0.025) TCGA-CC-5263-01 10 47000583 47000583 C A GPRIN2 3'UTR 0.17 TCGA-CC-5263-01 10 50732464 50732464 T A ERCC6-PGBD3 Missense_Mutation p.R338W 0.37 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CC-5263-01 10 8093125 8093125 G T GATA3 5'Flank 0.47 TCGA-CC-5263-01 10 94834174 94834174 T C CYP26A1 Missense_Mutation p.I100T 0.08 deleterious(0) probably_damaging(0.999) TCGA-CC-5263-01 11 18751279 18751279 C T PTPN5 Silent p.L472L 0.30 TCGA-CC-5263-01 11 2939298 2939298 G T SLC22A18 Missense_Mutation p.V246L 0.30 deleterious(0.02) benign(0.256) TCGA-CC-5263-01 11 56345082 56345082 A T OR5M10 Missense_Mutation p.L39Q 0.38 deleterious(0) possibly_damaging(0.739) TCGA-CC-5263-01 11 71721833 71721833 T G NUMA1 Missense_Mutation p.K1573T 0.38 possibly_damaging(0.894) TCGA-CC-5263-01 12 11420654 11420654 G T PRB3 Missense_Mutation p.P177T 0.44 tolerated(0.06) unknown(0) TCGA-CC-5263-01 12 53237937 53237937 G A KRT78 Silent p.I329I 0.37 TCGA-CC-5263-01 12 55759521 55759521 G T OR6C75 Missense_Mutation p.L209F 0.37 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-CC-5263-01 12 668557 668557 G A B4GALNT3 Nonsense_Mutation p.W953* 0.35 TCGA-CC-5263-01 12 86268174 86268174 G C NTS 5'UTR 0.29 TCGA-CC-5263-01 13 101717813 101717813 C T NALCN Missense_Mutation p.C1516Y 0.29 deleterious(0) probably_damaging(0.99) TCGA-CC-5263-01 13 24243206 24243206 C A TNFRSF19 Silent p.V405V 0.23 TCGA-CC-5263-01 13 33638123 33638123 A G KL Missense_Mutation p.I947V 0.23 tolerated(0.1) benign(0.144) TCGA-CC-5263-01 13 36050192 36050192 G T MAB21L1 Silent p.A28A 0.63 TCGA-CC-5263-01 13 36050193 36050193 G T MAB21L1 Missense_Mutation p.A28D 0.63 tolerated(0.37) benign(0.14) TCGA-CC-5263-01 13 88331330 88331330 G A SLITRK5 3'UTR 0.51 TCGA-CC-5263-01 14 103174914 103174914 A G RCOR1 Missense_Mutation p.E258G 0.29 tolerated(0.36) possibly_damaging(0.84) TCGA-CC-5263-01 14 20249422 20249422 G A OR4M1 Silent p.%3D 0.18 TCGA-CC-5263-01 14 20897958 20897958 G T KLHL33 Missense_Mutation p.L293I 0.33 deleterious(0.02) benign(0.068) TCGA-CC-5263-01 14 21878045 21878045 G A CHD8 Missense_Mutation p.R777W 0.10 deleterious(0) probably_damaging(0.981) TCGA-CC-5263-01 14 23902387 23902387 A G MYH7 Missense_Mutation p.F84S 0.38 deleterious(0.01) probably_damaging(0.961) TCGA-CC-5263-01 14 24727745 24727745 C A TGM1 Missense_Mutation p.V432F 0.33 deleterious(0) probably_damaging(0.999) TCGA-CC-5263-01 14 24730963 24730963 A G TGM1 Missense_Mutation p.M149T 0.33 deleterious(0) benign(0.057) TCGA-CC-5263-01 14 93483123 93483123 C T ITPK1 Silent p.E48E 0.47 TCGA-CC-5263-01 14 94088075 94088075 A G UNC79 Missense_Mutation p.Q1322R 0.36 deleterious_low_confidence(0) benign(0.354) TCGA-CC-5263-01 15 102359072 102359072 A T OR4F15 Missense_Mutation p.H228L 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.756) TCGA-CC-5263-01 15 28358214 28358214 T C HERC2 Intron 0.40 TCGA-CC-5263-01 15 52638630 52638630 A - MYO5A Frame_Shift_Del p.L1296Wfs*7 0.28 TCGA-CC-5263-01 16 15126797 15126797 A T PDXDC1 Nonsense_Mutation p.K551* 0.38 TCGA-CC-5263-01 16 28890418 28890418 A G ATP2A1 Splice_Site p.X40_splice 0.38 TCGA-CC-5263-01 16 28946809 28946809 G A CD19 Missense_Mutation p.A294T 0.37 tolerated(0.08) possibly_damaging(0.908) TCGA-CC-5263-01 16 29001267 29001267 C A LAT Silent p.S248S 0.34 TCGA-CC-5263-01 16 46766546 46766546 C T MYLK3 Missense_Mutation p.G346R 0.79 tolerated(0.3) benign(0.02) TCGA-CC-5263-01 16 75485578 75485578 C T TMEM170A Missense_Mutation p.G98E 0.56 deleterious(0) probably_damaging(1) TCGA-CC-5263-01 17 21319449 21319449 G C KCNJ12 Silent p.V265V 0.19 TCGA-CC-5263-01 17 29119458 29119458 C T CRLF3 Missense_Mutation p.R320K 0.34 tolerated(0.47) probably_damaging(0.987) TCGA-CC-5263-01 17 33690385 33690385 C A SLFN11 Missense_Mutation p.A148S 0.30 deleterious(0) possibly_damaging(0.798) TCGA-CC-5263-01 17 38545608 38545608 T G TOP2A 3'UTR 0.36 TCGA-CC-5263-01 17 38955214 38955214 A G KRT28 Missense_Mutation p.L163P 0.27 deleterious(0) probably_damaging(0.994) TCGA-CC-5263-01 17 40733882 40733889 CAGAAGTT - FAM134C Frame_Shift_Del p.E448Gfs*14 0.31 TCGA-CC-5263-01 17 41958848 41958848 T G MPP2 Missense_Mutation p.Q264P 0.29 tolerated(0.07) probably_damaging(0.998) TCGA-CC-5263-01 17 43228567 43228567 A C HEXIM1 3'UTR 0.28 TCGA-CC-5263-01 17 56342176 56342176 C T LPO Missense_Mutation p.P454S 0.52 deleterious(0.02) probably_damaging(1) TCGA-CC-5263-01 17 57288227 57288227 A G SMG8 Missense_Mutation p.N272S 0.57 tolerated(0.41) benign(0.024) TCGA-CC-5263-01 17 57759022 57759022 T C CLTC Silent p.H1088H 0.51 TCGA-CC-5263-01 17 7129551 7129551 T G DVL2 Missense_Mutation p.K615T 0.60 tolerated(0.52) possibly_damaging(0.728) TCGA-CC-5263-01 17 72343926 72343926 G A KIF19 Missense_Mutation p.G312E 0.27 deleterious(0) probably_damaging(0.98) TCGA-CC-5263-01 17 74625419 74625419 C T ST6GALNAC1 Missense_Mutation p.G169D 0.30 benign(0.002) TCGA-CC-5263-01 17 7577107 7577107 A T TP53 Nonsense_Mutation p.C277* 0.70 TCGA-CC-5263-01 17 80039104 80039104 G A FASN Silent p.R2177R 0.63 TCGA-CC-5263-01 18 11889442 11889442 T A MPPE1 Silent p.P146P 0.24 TCGA-CC-5263-01 18 12691398 12691398 C A CEP76 Missense_Mutation p.R298L 0.49 deleterious(0) probably_damaging(0.997) TCGA-CC-5263-01 18 40854035 40854035 T A SYT4 Missense_Mutation p.N120I 0.32 tolerated(0.25) benign(0.002) TCGA-CC-5263-01 18 9535918 9535918 A T RALBP1 Nonsense_Mutation p.K651* 0.33 TCGA-CC-5263-01 19 1051263 1051263 A T ABCA7 Nonsense_Mutation p.K932* 0.32 TCGA-CC-5263-01 19 17412326 17412326 T A ABHD8 Missense_Mutation p.T34S 0.47 tolerated_low_confidence(0.44) benign(0.002) TCGA-CC-5263-01 19 18731265 18731265 G A TMEM59L Nonsense_Mutation p.W316* 0.22 TCGA-CC-5263-01 19 23927768 23927768 A T ZNF681 Missense_Mutation p.V195E 0.37 tolerated(1) benign(0.293) TCGA-CC-5263-01 19 30303569 30303569 C A CCNE1 Intron 0.62 TCGA-CC-5263-01 19 44514563 44514563 C G ZNF230 Silent p.S124S 0.72 TCGA-CC-5263-01 19 51298425 51298425 C T ACPT 3'UTR 0.48 TCGA-CC-5263-01 19 54663978 54663978 A T TMC4 3'UTR 0.47 TCGA-CC-5263-01 19 55606963 55606963 T C PPP1R12C Silent p.E412E 0.31 TCGA-CC-5263-01 19 55716907 55716907 C A PTPRH Missense_Mutation p.A136S 0.39 unknown(0) TCGA-CC-5263-01 19 57723567 57723567 G T ZNF264 Nonsense_Mutation p.E368* 0.42 TCGA-CC-5263-01 19 59067482 59067482 T G UBE2M Missense_Mutation p.T176P 0.30 tolerated(0.13) benign(0.214) TCGA-CC-5263-01 19 6416830 6416830 C T KHSRP Missense_Mutation p.G416S 0.39 tolerated(0.1) probably_damaging(0.999) TCGA-CC-5263-01 19 9045799 9045799 G C MUC16 Silent p.T11944T 0.32 TCGA-CC-5263-01 1 109340798 109340798 G T STXBP3 Missense_Mutation p.R463L 0.41 deleterious(0.01) probably_damaging(0.988) TCGA-CC-5263-01 1 109340799 109340799 G T STXBP3 Silent p.R463R 0.41 TCGA-CC-5263-01 1 114646254 114646254 G T SYT6 Missense_Mutation p.N302K 0.46 deleterious(0) probably_damaging(1) TCGA-CC-5263-01 1 147092307 147092307 A T BCL9 Missense_Mutation p.R782S 0.28 tolerated(0.39) probably_damaging(0.942) TCGA-CC-5263-01 1 153314164 153314164 C A PGLYRP4 Missense_Mutation p.Q188H 0.41 deleterious(0.01) probably_damaging(1) TCGA-CC-5263-01 1 154033436 154033436 A G NUP210L Silent p.Y910Y 0.35 TCGA-CC-5263-01 1 155719624 155719626 CTA - GON4L 3'UTR 0.31 TCGA-CC-5263-01 1 158655024 158655024 A G SPTA1 Silent p.G46G 0.45 TCGA-CC-5263-01 1 158817665 158817665 C A MNDA Missense_Mutation p.R379S 0.39 tolerated(0.58) benign(0.057) TCGA-CC-5263-01 1 163038570 163038570 C T RGS4 5'UTR 0.41 TCGA-CC-5263-01 1 168262484 168262484 T C TBX19 Missense_Mutation p.F191L 0.42 deleterious(0.03) benign(0.174) TCGA-CC-5263-01 1 17571384 17571384 A G PADI1 3'UTR 0.21 TCGA-CC-5263-01 1 179603595 179603595 A T TDRD5 Missense_Mutation p.Q377L 0.39 tolerated(0.06) benign(0.02) TCGA-CC-5263-01 1 21231426 21231426 G A EIF4G3 Missense_Mutation p.P518S 0.37 deleterious_low_confidence(0) benign(0.184) TCGA-CC-5263-01 1 236749628 236749628 T C HEATR1 Missense_Mutation p.T614A 0.42 tolerated(0.77) benign(0.001) TCGA-CC-5263-01 1 245847619 245847619 G A KIF26B Silent p.A781A 0.33 TCGA-CC-5263-01 1 246923373 246923373 A T SCCPDH Missense_Mutation p.I310L 0.35 tolerated(1) benign(0.001) TCGA-CC-5263-01 1 36788575 36788575 G C EVA1B Missense_Mutation p.R22G 0.37 tolerated(0.18) probably_damaging(0.992) TCGA-CC-5263-01 1 47610101 47610101 A G CYP4A22 Missense_Mutation p.H288R 0.39 tolerated(0.23) benign(0.042) TCGA-CC-5263-01 1 53715153 53715153 G T LRP8 Missense_Mutation p.P918T 0.37 tolerated_low_confidence(0.19) benign(0.071) TCGA-CC-5263-01 1 71512812 71512812 G A PTGER3 Missense_Mutation p.A150V 0.46 tolerated(0.3) probably_damaging(0.991) TCGA-CC-5263-01 1 74671212 74671212 G T FPGT Missense_Mutation p.G494V 0.35 deleterious(0) probably_damaging(0.999) TCGA-CC-5263-01 1 87379862 87379862 A - SEP15 5'UTR 0.42 TCGA-CC-5263-01 20 16717950 16717950 G A SNRPB2 Missense_Mutation p.M94I 0.36 tolerated(0.2) benign(0.01) TCGA-CC-5263-01 20 20056165 20056165 G T C20orf26 Missense_Mutation p.G158W 0.40 deleterious(0.02) probably_damaging(0.97) TCGA-CC-5263-01 20 3669214 3669214 A T SIGLEC1 Missense_Mutation p.L1708Q 0.39 deleterious_low_confidence(0) benign(0.248) TCGA-CC-5263-01 20 44645112 44645112 A T MMP9 3'UTR 0.32 TCGA-CC-5263-01 20 45004003 45004003 T C ELMO2 Missense_Mutation p.R313G 0.37 deleterious(0.01) possibly_damaging(0.901) TCGA-CC-5263-01 20 58444857 58444857 C - SYCP2 Frame_Shift_Del p.R1246Kfs*6 0.24 TCGA-CC-5263-01 20 62737266 62737266 C T NPBWR2 Missense_Mutation p.A307T 0.36 tolerated(0.39) benign(0.019) TCGA-CC-5263-01 22 30050696 30050696 G T NF2 Missense_Mutation p.E166D 0.44 tolerated(0.43) benign(0.004) TCGA-CC-5263-01 22 41739420 41739420 C T ZC3H7B Silent p.G433G 0.34 TCGA-CC-5263-01 22 45996417 45996417 T A FBLN1 3'UTR 0.29 TCGA-CC-5263-01 2 114257073 114257073 C T FOXD4L1 Silent p.S80S 0.10 TCGA-CC-5263-01 2 133547663 133547663 C A NCKAP5 Missense_Mutation p.S342I 0.47 deleterious(0) probably_damaging(0.999) TCGA-CC-5263-01 2 157186659 157186659 C T NR4A2 Missense_Mutation p.G14R 0.26 deleterious(0.01) probably_damaging(1) TCGA-CC-5263-01 2 168811841 168811842 - T STK39 3'UTR 0.42 TCGA-CC-5263-01 2 171242774 171242774 T C MYO3B Silent p.L456L 0.35 TCGA-CC-5263-01 2 177017653 177017653 G C HOXD4 Missense_Mutation p.D251H 0.37 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-CC-5263-01 2 179419703 179419703 G A TTN Missense_Mutation p.L29495F 0.41 TCGA-CC-5263-01 2 219893116 219893116 A G CCDC108 Missense_Mutation p.L553P 0.38 deleterious(0) probably_damaging(0.986) TCGA-CC-5263-01 2 238449167 238449167 G A MLPH Silent p.A427A 0.57 TCGA-CC-5263-01 2 242275425 242275425 A G SEPT2 Missense_Mutation p.T85A 0.37 tolerated(0.14) benign(0.275) TCGA-CC-5263-01 2 74327943 74327943 A T TET3 Missense_Mutation p.Q1208L 0.37 deleterious(0.02) possibly_damaging(0.785) TCGA-CC-5263-01 2 74783904 74783904 C A DOK1 Missense_Mutation p.P370Q 0.31 tolerated(0.14) benign(0.352) TCGA-CC-5263-01 2 96589406 96589406 T A ANKRD36C 3'Flank 0.31 TCGA-CC-5263-01 3 147120535 147120535 C G ZIC4 Missense_Mutation p.R67P 0.34 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-CC-5263-01 3 156978884 156978884 G A VEPH1 3'UTR 0.41 TCGA-CC-5263-01 3 183667834 183667834 T A ABCC5 Silent p.A1008A 0.31 TCGA-CC-5263-01 3 39171742 39171742 G T TTC21A Nonsense_Mutation p.E745* 0.66 TCGA-CC-5263-01 4 123274094 123274094 G A KIAA1109 Missense_Mutation p.V4629I 0.34 probably_damaging(0.996) TCGA-CC-5263-01 4 143094941 143094941 G T INPP4B Nonsense_Mutation p.Y401* 0.36 TCGA-CC-5263-01 4 15341666 15341666 T C C1QTNF7 5'UTR 0.09 TCGA-CC-5263-01 4 158262498 158262498 G A GRIA2 Missense_Mutation p.A643T 0.38 deleterious(0) probably_damaging(0.999) TCGA-CC-5263-01 4 158262499 158262499 C A GRIA2 Missense_Mutation p.A643D 0.38 deleterious(0) probably_damaging(1) TCGA-CC-5263-01 4 15937856 15937856 C T FGFBP1 Missense_Mutation p.V134M 0.41 deleterious(0.01) benign(0.175) TCGA-CC-5263-01 4 159790073 159790073 A T FNIP2 Missense_Mutation p.Q762L 0.41 tolerated(0.07) benign(0.287) TCGA-CC-5263-01 4 56846403 56846403 A T CEP135 Missense_Mutation p.Q523L 0.39 deleterious(0) probably_damaging(0.999) TCGA-CC-5263-01 5 102612425 102612425 G T C5orf30 3'UTR 0.68 TCGA-CC-5263-01 5 131877442 131877442 C T IL5 3'UTR 0.42 TCGA-CC-5263-01 5 140532604 140532604 T A PCDHB6 3'UTR 0.58 TCGA-CC-5263-01 5 168127670 168127670 A G SLIT3 Silent p.T953T 0.34 TCGA-CC-5263-01 5 169697820 169697820 G A LCP2 Silent p.D142D 0.37 TCGA-CC-5263-01 5 179306101 179306101 C A TBC1D9B Missense_Mutation p.V505F 0.31 deleterious(0) possibly_damaging(0.866) TCGA-CC-5263-01 5 179306102 179306102 C G TBC1D9B Silent p.L504L 0.30 TCGA-CC-5263-01 5 33937817 33937817 C A RXFP3 Silent p.V324V 0.61 TCGA-CC-5263-01 5 36684073 36684073 C T SLC1A3 Missense_Mutation p.T466M 0.24 deleterious(0.01) probably_damaging(0.984) TCGA-CC-5263-01 5 38427282 38427282 T A EGFLAM Missense_Mutation p.F661Y 0.26 tolerated(0.06) probably_damaging(1) TCGA-CC-5263-01 5 89910835 89910835 C A GPR98 Nonsense_Mutation p.S69* 0.58 TCGA-CC-5263-01 6 139694674 139694674 C T CITED2 Silent p.P136P 0.50 TCGA-CC-5263-01 6 139694675 139694675 G T CITED2 Missense_Mutation p.P136Q 0.51 deleterious(0) probably_damaging(0.999) TCGA-CC-5263-01 6 13977395 13977395 T C RNF182 Silent p.S15S 0.43 TCGA-CC-5263-01 6 148867236 148867236 T A SASH1 Missense_Mutation p.M1145K 0.51 deleterious(0) benign(0.178) TCGA-CC-5263-01 6 155718096 155718096 G T NOX3 Missense_Mutation p.S527R 0.24 tolerated(0.65) benign(0.086) TCGA-CC-5263-01 6 160454027 160454027 G T IGF2R Nonsense_Mutation p.G367* 0.29 TCGA-CC-5263-01 6 165846593 165846593 C G PDE10A Missense_Mutation p.G188R 0.26 deleterious(0) probably_damaging(0.999) TCGA-CC-5263-01 6 26390936 26390936 G A BTN2A2 Splice_Site p.X318_splice 0.28 TCGA-CC-5263-01 6 35378867 35378867 G T PPARD Translation_Start_Site p.M1? 0.28 tolerated_low_confidence(0.06) unknown(0) TCGA-CC-5263-01 6 37605797 37605797 A C MDGA1 Intron 0.63 TCGA-CC-5263-01 6 76024218 76024218 T A FILIP1 Nonsense_Mutation p.K444* 0.50 TCGA-CC-5263-01 7 113559066 113559066 T C PPP1R3A 5'UTR 0.30 TCGA-CC-5263-01 7 156743259 156743259 A T NOM1 Silent p.A276A 0.43 TCGA-CC-5263-01 7 36633945 36633945 C T AOAH Missense_Mutation p.G313E 0.05 tolerated(0.27) probably_damaging(0.955) TCGA-CC-5263-01 7 65751568 65751568 A G TPST1 Missense_Mutation p.I306V 0.43 tolerated(0.09) benign(0.071) TCGA-CC-5263-01 7 71571275 71571275 G T CALN1 Silent p.I83I 0.33 TCGA-CC-5263-01 7 75959524 75959524 C G YWHAG Silent p.S38S 0.48 TCGA-CC-5263-01 7 80432006 80432006 G T SEMA3C Silent p.G297G 0.34 TCGA-CC-5263-01 7 88424306 88424306 A T C7orf62 5'UTR 0.34 TCGA-CC-5263-01 7 99693701 99693701 C A MCM7 Missense_Mutation p.G431C 0.39 deleterious(0) probably_damaging(1) TCGA-CC-5263-01 8 139736902 139736902 C A COL22A1 Nonsense_Mutation p.G735* 0.30 TCGA-CC-5263-01 8 16853235 16853235 G T FGF20 Missense_Mutation p.L107M 0.56 deleterious(0.02) possibly_damaging(0.551) TCGA-CC-5263-01 9 130658539 130658539 T C ST6GALNAC6 Silent p.R33R 0.28 TCGA-CC-5263-01 9 131909700 131909700 A G PPP2R4 Missense_Mutation p.K310R 0.53 tolerated(0.34) benign(0.001) TCGA-CC-5263-01 9 131909703 131909703 T C PPP2R4 Missense_Mutation p.F311S 0.53 deleterious(0) probably_damaging(0.999) TCGA-CC-5263-01 9 5922996 5922996 C T KIAA2026 Silent p.Q1000Q 0.32 TCGA-CC-5263-01 X 10174772 10174772 G T CLCN4 Missense_Mutation p.A267S 0.74 deleterious(0.02) probably_damaging(1) TCGA-CC-5263-01 X 114425456 114425456 A T RBMXL3 Silent p.G484G 0.19 TCGA-CC-5263-01 X 47428285 47428285 G T ARAF Missense_Mutation p.Q415H 0.80 deleterious(0) probably_damaging(0.998) TCGA-CC-5263-01 X 67283856 67283856 T A OPHN1 Silent p.P666P 0.78 TCGA-CC-5264-01 10 13239672 13239672 C T MCM10 Missense_Mutation p.T676I 0.42 tolerated(0.1) benign(0.033) TCGA-CC-5264-01 10 61572436 61572436 T G CCDC6 Missense_Mutation p.E268D 0.84 deleterious(0.01) possibly_damaging(0.802) TCGA-CC-5264-01 11 1264490 1264490 G A MUC5B Missense_Mutation p.S2127N 0.14 unknown(0) TCGA-CC-5264-01 11 55579471 55579471 T G OR5L1 Missense_Mutation p.F177V 0.13 deleterious(0.01) probably_damaging(0.973) TCGA-CC-5264-01 11 6891293 6891293 C T OR10A2 Missense_Mutation p.A103V 0.45 deleterious(0.04) benign(0.12) TCGA-CC-5264-01 12 124829344 124829344 C T NCOR2 Missense_Mutation p.E1505K 0.24 possibly_damaging(0.85) TCGA-CC-5264-01 12 128899692 128899692 G A TMEM132C Silent p.L167L 0.17 TCGA-CC-5264-01 12 130650081 130650081 G T FZD10 3'UTR 0.21 TCGA-CC-5264-01 12 25054956 25054956 A G BCAT1 Intron 0.36 TCGA-CC-5264-01 12 43833853 43833853 C A ADAMTS20 Silent p.G770G 0.40 TCGA-CC-5264-01 12 5021299 5021299 A G KCNA1 Missense_Mutation p.N252S 0.44 tolerated(0.1) possibly_damaging(0.706) TCGA-CC-5264-01 12 52056826 52056826 C T SCN8A Silent p.G75G 0.49 TCGA-CC-5264-01 12 52863028 52863028 T A KRT6C Missense_Mutation p.S505C 0.24 tolerated(0.25) unknown(0) TCGA-CC-5264-01 12 54405067 54405067 G T HOXC8 Missense_Mutation p.D211Y 0.24 deleterious(0) probably_damaging(0.976) TCGA-CC-5264-01 12 54687079 54687079 G T NFE2 Silent p.P67P 0.43 TCGA-CC-5264-01 12 97087577 97087577 A G C12orf55 Silent p.R2114R 0.08 TCGA-CC-5264-01 12 98850355 98850355 G A SLC9A7P1 RNA 0.22 TCGA-CC-5264-01 14 50915494 50915494 T C MAP4K5 Missense_Mutation p.M358V 0.74 tolerated(0.44) benign(0.026) TCGA-CC-5264-01 14 68238928 68238928 C T ZFYVE26 Splice_Site p.X1774_splice 0.78 TCGA-CC-5264-01 15 25953217 25953217 C T ATP10A Silent p.L827L 0.75 TCGA-CC-5264-01 15 80767490 80767490 T G ARNT2 Missense_Mutation p.L183R 0.83 deleterious(0) probably_damaging(0.928) TCGA-CC-5264-01 16 31072640 31072640 A T ZNF668 Missense_Mutation p.S560T 0.19 tolerated(0.68) benign(0.001) TCGA-CC-5264-01 16 49433210 49433210 C T C16orf78 3'UTR 0.42 TCGA-CC-5264-01 16 67859123 67859123 C A TSNAXIP1 Missense_Mutation p.D200E 0.42 tolerated(0.08) possibly_damaging(0.727) TCGA-CC-5264-01 16 85687939 85687940 CG - GSE1 Frame_Shift_Del p.L162Pfs*188 0.54 TCGA-CC-5264-01 17 36622999 36622999 A T ARHGAP23 Missense_Mutation p.T359S 0.40 tolerated(0.2) benign(0.079) TCGA-CC-5264-01 17 42883077 42883077 C G GJC1 Missense_Mutation p.A37P 0.42 deleterious(0) possibly_damaging(0.898) TCGA-CC-5264-01 17 6360967 6360970 AGGC - PITPNM3 Frame_Shift_Del p.A855Pfs*20 0.73 TCGA-CC-5264-01 17 66533757 66533757 A G FAM20A Missense_Mutation p.L496P 0.35 tolerated(0.26) probably_damaging(0.997) TCGA-CC-5264-01 17 76227658 76227658 C A TMEM235 5'Flank 0.55 TCGA-CC-5264-01 17 76421607 76421607 A T DNAH17 Missense_Mutation p.W4344R 0.14 probably_damaging(0.998) TCGA-CC-5264-01 17 77075702 77075702 A G ENGASE Missense_Mutation p.H183R 0.42 tolerated(0.07) benign(0.098) TCGA-CC-5264-01 17 79982609 79982609 A G LRRC45 Missense_Mutation p.K108R 0.40 tolerated(0.07) benign(0.043) TCGA-CC-5264-01 17 80051491 80051491 A G FASN Missense_Mutation p.F146S 0.51 deleterious(0) probably_damaging(0.961) TCGA-CC-5264-01 19 1458093 1458098 CCAGCC - APC2 Intron 0.56 TCGA-CC-5264-01 19 1578491 1578491 C A MBD3 Missense_Mutation p.A242S 0.26 deleterious(0) probably_damaging(0.999) TCGA-CC-5264-01 19 36019030 36019030 C A SBSN Missense_Mutation p.D52Y 0.56 deleterious(0) probably_damaging(0.929) TCGA-CC-5264-01 19 36673862 36673862 C A ZNF565 Nonsense_Mutation p.E336* 0.30 TCGA-CC-5264-01 19 38378936 38378936 T A WDR87 Missense_Mutation p.E1753V 0.33 probably_damaging(0.946) TCGA-CC-5264-01 19 41860879 41860879 C A B9D2 Missense_Mutation p.S85I 0.63 tolerated(0.25) benign(0.022) TCGA-CC-5264-01 19 48024413 48024413 C A ZNF541 3'UTR 0.60 TCGA-CC-5264-01 19 48886580 48886580 T C KDELR1 Silent p.L203L 0.53 TCGA-CC-5264-01 19 55493601 55493601 A T NLRP2 Missense_Mutation p.S179C 0.52 deleterious(0.02) possibly_damaging(0.818) TCGA-CC-5264-01 19 5699211 5699211 G A LONP1 Silent p.F504F 0.68 TCGA-CC-5264-01 19 58101688 58101688 G T ZIK1 Missense_Mutation p.W170L 0.35 tolerated(0.74) benign(0) TCGA-CC-5264-01 1 11107262 11107262 C T MASP2 Translation_Start_Site p.M1? 0.34 deleterious(0.01) possibly_damaging(0.838) TCGA-CC-5264-01 1 11119332 11119332 G A SRM Nonsense_Mutation p.Q80* 0.30 TCGA-CC-5264-01 1 12677249 12677249 G T DHRS3 Missense_Mutation p.D35E 0.55 deleterious(0) possibly_damaging(0.516) TCGA-CC-5264-01 1 145508934 145508934 T C RBM8A Missense_Mutation p.Y121H 0.37 deleterious(0) probably_damaging(0.998) TCGA-CC-5264-01 1 155291138 155291138 A G RUSC1 Intron 0.15 TCGA-CC-5264-01 1 159015214 159015214 A T IFI16 Missense_Mutation p.Q486L 0.14 tolerated(0.08) benign(0.133) TCGA-CC-5264-01 1 16073479 16073479 T A TMEM82 Missense_Mutation p.L292H 0.29 deleterious(0) probably_damaging(0.946) TCGA-CC-5264-01 1 16577289 16577289 C A FBXO42 Missense_Mutation p.S677I 0.35 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-CC-5264-01 1 204159887 204159887 C A KISS1 Nonsense_Mutation p.E48* 0.53 TCGA-CC-5264-01 1 205272673 205272673 C G NUAK2 Missense_Mutation p.D598H 0.39 tolerated_low_confidence(0.06) possibly_damaging(0.717) TCGA-CC-5264-01 1 209789918 209789918 G A LAMB3 Nonsense_Mutation p.Q1094* 0.35 TCGA-CC-5264-01 1 228336430 228336430 C T GUK1 Silent p.P201P 0.54 TCGA-CC-5264-01 1 235628772 235628772 A T B3GALNT2 Intron 0.26 TCGA-CC-5264-01 1 242045224 242045224 G A EXO1 Missense_Mutation p.D706N 0.38 tolerated(0.06) benign(0.014) TCGA-CC-5264-01 1 28863318 28863318 G A RCC1 Missense_Mutation p.E364K 0.55 tolerated(0.19) benign(0.036) TCGA-CC-5264-01 1 3342300 3342300 A T PRDM16 Missense_Mutation p.H1032L 0.35 tolerated(0.09) benign(0.097) TCGA-CC-5264-01 1 6181279 6181279 C A CHD5 Missense_Mutation p.D1600Y 0.30 deleterious_low_confidence(0) benign(0.017) TCGA-CC-5264-01 20 36405727 36405727 T - CTNNBL1 Intron 0.28 TCGA-CC-5264-01 20 39792450 39792451 - T PLCG1 Frame_Shift_Ins p.W330Lfs*18 0.31 TCGA-CC-5264-01 20 4202228 4202228 G T ADRA1D Missense_Mutation p.A554D 0.48 tolerated_low_confidence(0.09) benign(0.022) TCGA-CC-5264-01 20 4202229 4202229 C T ADRA1D Missense_Mutation p.A554T 0.48 tolerated_low_confidence(0.63) benign(0) TCGA-CC-5264-01 20 54978800 54978800 G T CSTF1 3'UTR 0.56 TCGA-CC-5264-01 20 55840845 55840845 T A BMP7 Missense_Mutation p.S112C 0.46 deleterious(0.01) possibly_damaging(0.799) TCGA-CC-5264-01 20 57766858 57766858 A C ZNF831 Silent p.R262R 0.13 TCGA-CC-5264-01 21 14417510 14417510 C A RNU6-614P 5'Flank 0.12 TCGA-CC-5264-01 21 35821367 35821367 C T KCNE1 3'UTR 0.48 TCGA-CC-5264-01 21 43892751 43892751 C A RSPH1 3'UTR 0.48 TCGA-CC-5264-01 22 16287729 16287729 C A POTEH Missense_Mutation p.A53S 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-CC-5264-01 2 141250227 141250227 C T LRP1B Missense_Mutation p.E3024K 0.24 benign(0.292) TCGA-CC-5264-01 2 225266346 225266346 C G FAM124B Missense_Mutation p.R47P 0.82 deleterious(0) probably_damaging(0.935) TCGA-CC-5264-01 2 26725219 26725219 G T OTOF Nonsense_Mutation p.S220* 0.13 TCGA-CC-5264-01 2 28635279 28635279 A G FOSL2 Silent p.S315S 0.08 TCGA-CC-5264-01 2 29092901 29092901 A G TRMT61B Silent p.C81C 0.50 TCGA-CC-5264-01 2 44201378 44201378 G A LRPPRC Nonsense_Mutation p.Q356* 0.05 TCGA-CC-5264-01 2 9667941 9667941 C T ADAM17 Missense_Mutation p.G198E 0.30 tolerated(0.72) benign(0.005) TCGA-CC-5264-01 3 134369796 134369796 G A KY Silent p.L3L 0.26 TCGA-CC-5264-01 3 142405170 142405170 A T PLS1 Missense_Mutation p.K311N 0.30 tolerated(0.05) benign(0.201) TCGA-CC-5264-01 3 156009791 156009791 T A KCNAB1 Intron 0.09 TCGA-CC-5264-01 3 196134222 196134222 T - UBXN7 Frame_Shift_Del p.N39Tfs*87 0.27 TCGA-CC-5264-01 3 33106973 33106973 C T GLB1 Silent p.G178G 0.53 TCGA-CC-5264-01 3 38347844 38347844 C T SLC22A14 Silent p.H109H 0.07 TCGA-CC-5264-01 3 57678508 57678508 C A DENND6A Splice_Site p.X79_splice 0.62 TCGA-CC-5264-01 3 57678509 57678509 C A DENND6A Missense_Mutation p.E79D 0.60 deleterious(0.01) benign(0.183) TCGA-CC-5264-01 3 62467411 62467411 T A CADPS Missense_Mutation p.I1054L 0.55 tolerated(1) benign(0.031) TCGA-CC-5264-01 3 9055115 9055115 C T SRGAP3 Missense_Mutation p.C675Y 0.34 tolerated(0.07) probably_damaging(0.994) TCGA-CC-5264-01 4 123268886 123268886 G C KIAA1109 Missense_Mutation p.A4361P 0.28 benign(0.37) TCGA-CC-5264-01 4 159048703 159048703 A T FAM198B Silent p.S480S 0.84 TCGA-CC-5264-01 4 1957858 1957858 G T WHSC1 Missense_Mutation p.G942W 0.52 deleterious(0) probably_damaging(1) TCGA-CC-5264-01 4 38799406 38799406 C A TLR1 Silent p.P349P 0.21 TCGA-CC-5264-01 4 44631480 44631480 A G YIPF7 Silent p.N146N 0.57 TCGA-CC-5264-01 4 46930408 46930408 G T GABRA4 Nonsense_Mutation p.S500* 0.65 TCGA-CC-5264-01 4 55599301 55599301 T A KIT Nonsense_Mutation p.C809* 0.21 TCGA-CC-5264-01 5 148411195 148411195 C A SH3TC2 Nonsense_Mutation p.G353* 0.86 TCGA-CC-5264-01 5 170610173 170610173 A G RANBP17 Missense_Mutation p.Y623C 0.82 deleterious(0.04) probably_damaging(0.996) TCGA-CC-5264-01 5 37186475 37186475 C A C5orf42 Missense_Mutation p.A1368S 0.24 deleterious(0) probably_damaging(0.997) TCGA-CC-5264-01 5 37341189 37341189 T A NUP155 Intron 0.64 TCGA-CC-5264-01 5 39306883 39306883 T C C9 Missense_Mutation p.S418G 0.26 tolerated(0.3) benign(0.216) TCGA-CC-5264-01 5 65288707 65288707 A G ERBB2IP Missense_Mutation p.D54G 0.09 deleterious(0) probably_damaging(0.999) TCGA-CC-5264-01 5 96219543 96219543 T C ERAP2 Missense_Mutation p.F208S 0.85 deleterious(0) possibly_damaging(0.876) TCGA-CC-5264-01 6 138550956 138550956 T C KIAA1244 Silent p.D129D 0.44 TCGA-CC-5264-01 6 157502282 157502282 C G ARID1B Silent p.V1105V 0.36 TCGA-CC-5264-01 6 29012335 29012335 A T OR2W1 Silent p.I206I 0.30 TCGA-CC-5264-01 6 3264070 3264070 T G PSMG4 Intron 0.29 TCGA-CC-5264-01 6 42978962 42978962 A C PPP2R5D Missense_Mutation p.K583Q 0.51 tolerated_low_confidence(0.09) benign(0.058) TCGA-CC-5264-01 7 107807387 107807387 C T NRCAM Missense_Mutation p.D1149N 0.11 tolerated(0.42) benign(0.001) TCGA-CC-5264-01 7 107836240 107836240 A G NRCAM Silent p.C476C 0.50 TCGA-CC-5264-01 7 108155899 108155899 G A PNPLA8 Missense_Mutation p.L13F 0.51 tolerated_low_confidence(0.53) benign(0.005) TCGA-CC-5264-01 7 117292987 117292987 T G CFTR Splice_Site p.X1321_splice 0.42 TCGA-CC-5264-01 7 121756964 121756964 G C AASS Silent p.P245P 0.16 TCGA-CC-5264-01 7 154379566 154379566 G A DPP6 Intron 0.49 TCGA-CC-5264-01 7 72722781 72722781 G A NSUN5 Silent p.L3L 0.53 TCGA-CC-5264-01 7 96324155 96324155 T G SHFM1 Missense_Mutation p.N42T 0.12 deleterious(0) probably_damaging(0.982) TCGA-CC-5264-01 8 38678084 38678084 G C TACC1 Missense_Mutation p.C441S 0.17 tolerated(0.21) benign(0.027) TCGA-CC-5264-01 8 39537556 39537556 G T ADAM18 Missense_Mutation p.K544N 0.44 tolerated(0.23) benign(0.109) TCGA-CC-5264-01 8 40683185 40683185 G A ZMAT4 Missense_Mutation p.S4F 0.43 deleterious_low_confidence(0.02) possibly_damaging(0.459) TCGA-CC-5264-01 8 54147486 54147486 G C OPRK1 Missense_Mutation p.T148S 0.28 tolerated(0.07) probably_damaging(0.999) TCGA-CC-5264-01 8 68934295 68934295 G C PREX2 Missense_Mutation p.E121Q 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-CC-5264-01 8 86569844 86569844 T A REXO1L1P 3'UTR 0.38 TCGA-CC-5264-01 8 87226761 87226761 C T SLC7A13 Missense_Mutation p.G432R 0.09 deleterious(0) probably_damaging(0.995) TCGA-CC-5264-01 8 88886016 88886016 G A DCAF4L2 Missense_Mutation p.H62Y 0.49 tolerated(0.1) benign(0.001) TCGA-CC-5264-01 9 107457698 107457698 T A OR13D1 Silent p.A332A 0.27 TCGA-CC-5264-01 9 109687219 109687219 T G ZNF462 Silent p.S342S 0.17 TCGA-CC-5264-01 9 126134509 126134509 C A CRB2 Missense_Mutation p.H830Q 0.42 tolerated(0.11) possibly_damaging(0.537) TCGA-CC-5264-01 9 131476850 131476850 G A PKN3 Silent p.L497L 0.39 TCGA-CC-5264-01 9 133948175 133948175 T A LAMC3 Missense_Mutation p.S1124T 0.47 tolerated(0.11) benign(0.02) TCGA-CC-5264-01 9 139380439 139380439 T C C9orf163 3'UTR 0.43 TCGA-CC-5264-01 X 102931737 102931737 C A MORF4L2 Missense_Mutation p.R73S 0.95 tolerated(0.69) benign(0.005) TCGA-CC-5264-01 X 12904609 12904609 A G TLR7 Missense_Mutation p.K328E 0.86 tolerated(0.14) benign(0.271) TCGA-CC-5264-01 X 152685756 152685756 C T ZFP92 Silent p.I77I 0.95 TCGA-CC-5264-01 X 65393436 65393436 C G HEPH Missense_Mutation p.L194V 0.22 deleterious(0.03) probably_damaging(0.945) TCGA-CC-A123-01 10 102107190 102107190 C A SCD 5'UTR 0.46 TCGA-CC-A123-01 10 124896950 124896950 C T HMX3 Silent p.G259G 0.38 TCGA-CC-A123-01 10 134219790 134219790 C T PWWP2B 3'UTR 0.27 TCGA-CC-A123-01 10 134663787 134663787 G T TTC40 Missense_Mutation p.D1971E 0.27 deleterious(0.01) benign(0.442) TCGA-CC-A123-01 10 56106175 56106177 CAT - PCDH15 In_Frame_Del p.D181del 0.40 TCGA-CC-A123-01 10 61029860 61029860 G T FAM13C Missense_Mutation p.P201Q 0.50 deleterious(0.02) possibly_damaging(0.776) TCGA-CC-A123-01 10 75277370 75277370 T C USP54 Silent p.P938P 0.53 TCGA-CC-A123-01 10 94784 94784 C A TUBB8 Silent p.L42L 0.47 TCGA-CC-A123-01 11 27137031 27137031 C A BBOX1 Missense_Mutation p.A189E 0.35 tolerated(0.08) probably_damaging(0.997) TCGA-CC-A123-01 11 281055 281055 G C NLRP6 Missense_Mutation p.D441H 0.26 deleterious(0.01) benign(0.422) TCGA-CC-A123-01 11 63999389 63999389 G T DNAJC4 Missense_Mutation p.A45S 0.30 deleterious(0.02) probably_damaging(0.996) TCGA-CC-A123-01 11 65350204 65350219 ACTGAAGATAGAAGAT - EHBP1L1 Frame_Shift_Del p.L688Qfs*32 0.16 TCGA-CC-A123-01 11 85956252 85956252 C G EED 5'UTR 0.29 TCGA-CC-A123-01 11 8662439 8662439 G T TRIM66 Missense_Mutation p.P348T 0.28 tolerated(0.09) benign(0.016) TCGA-CC-A123-01 12 3736844 3736844 A C EFCAB4B Missense_Mutation p.N588K 0.30 tolerated(0.47) benign(0.002) TCGA-CC-A123-01 12 4383263 4383263 C A CCND2 Missense_Mutation p.N19K 0.24 tolerated(0.75) benign(0.075) TCGA-CC-A123-01 12 4848462 4848462 G T GALNT8 Nonsense_Mutation p.E215* 0.48 TCGA-CC-A123-01 12 5155676 5155676 T C KCNA5 3'UTR 0.37 TCGA-CC-A123-01 12 83250808 83250808 C T TMTC2 Nonsense_Mutation p.Q35* 0.34 TCGA-CC-A123-01 13 20277467 20277467 G T PSPC1 Missense_Mutation p.Q474K 0.07 tolerated(0.1) benign(0.01) TCGA-CC-A123-01 14 20215599 20215599 C G OR4Q3 Missense_Mutation p.Q5E 0.20 deleterious(0.03) benign(0.004) TCGA-CC-A123-01 14 20612767 20612767 C A OR4N5 Missense_Mutation p.N291K 0.48 deleterious(0) possibly_damaging(0.881) TCGA-CC-A123-01 14 52734446 52734446 C A PTGDR 5'UTR 0.45 TCGA-CC-A123-01 14 53540463 53540463 A G DDHD1 Silent p.D464D 0.39 TCGA-CC-A123-01 14 55509702 55509702 T C SOCS4 5'UTR 0.17 TCGA-CC-A123-01 14 64520042 64520042 C T SYNE2 Silent p.L3137L 0.41 TCGA-CC-A123-01 14 77746417 77746417 G A POMT2 Missense_Mutation p.R578C 0.35 tolerated(0.18) possibly_damaging(0.453) TCGA-CC-A123-01 15 78927919 78927919 G C CHRNB4 Silent p.R22R 0.88 TCGA-CC-A123-01 15 88472662 88472662 G T NTRK3 Silent p.A631A 0.51 TCGA-CC-A123-01 16 19129335 19129335 T C ITPRIPL2 3'UTR 0.69 TCGA-CC-A123-01 16 27448870 27448870 C A IL21R Missense_Mutation p.H72N 0.71 deleterious(0.01) benign(0.259) TCGA-CC-A123-01 16 28507319 28507319 T C APOBR Silent p.A319A 0.34 TCGA-CC-A123-01 16 67432171 67432171 C G ZDHHC1 Missense_Mutation p.A291P 0.81 tolerated(0.06) benign(0.014) TCGA-CC-A123-01 17 12896302 12896302 C G ELAC2 Missense_Mutation p.A772P 0.73 deleterious(0) probably_damaging(0.997) TCGA-CC-A123-01 17 3101458 3101458 T C OR1A2 Missense_Mutation p.S216P 0.09 deleterious(0) probably_damaging(1) TCGA-CC-A123-01 17 34072948 34072948 G A GAS2L2 Missense_Mutation p.T523I 0.32 tolerated(0.13) benign(0.002) TCGA-CC-A123-01 17 61784645 61784645 T C STRADA Missense_Mutation p.K239E 0.64 tolerated(0.32) possibly_damaging(0.626) TCGA-CC-A123-01 17 7126517 7126517 G A ACADVL Silent p.E404E 0.74 TCGA-CC-A123-01 18 57026472 57026472 G A LMAN1 Missense_Mutation p.A2V 0.69 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CC-A123-01 19 11034659 11034659 G A YIPF2 Silent p.I167I 0.45 TCGA-CC-A123-01 19 14092957 14092957 G A RFX1 Silent p.T199T 0.48 TCGA-CC-A123-01 19 2120931 2120931 T G AP3D1 Missense_Mutation p.S471R 0.35 deleterious(0.03) benign(0.312) TCGA-CC-A123-01 19 36339602 36339602 C T NPHS1 Silent p.R369R 0.23 TCGA-CC-A123-01 19 38378502 38378502 C A WDR87 Nonsense_Mutation p.E1898* 0.28 TCGA-CC-A123-01 19 38378503 38378503 C G WDR87 Missense_Mutation p.Q1897H 0.27 possibly_damaging(0.643) TCGA-CC-A123-01 19 44661606 44661606 C G ZNF234 Silent p.T479T 0.29 TCGA-CC-A123-01 19 46914889 46914889 C T CCDC8 Silent p.A393A 0.43 TCGA-CC-A123-01 19 46914919 46914919 G C CCDC8 Missense_Mutation p.H383Q 0.27 benign(0) TCGA-CC-A123-01 1 142700195 142700195 G C RP11-417J8.6 RNA 0.22 TCGA-CC-A123-01 1 152759968 152759968 G - LCE1E Frame_Shift_Del p.G66Afs*12 0.24 TCGA-CC-A123-01 1 152883162 152883162 G A IVL Missense_Mutation p.D297N 0.39 deleterious(0.03) probably_damaging(0.936) TCGA-CC-A123-01 1 155290718 155290718 C A RUSC1 5'UTR 0.32 TCGA-CC-A123-01 1 155719625 155719625 T G GON4L 3'UTR 0.29 TCGA-CC-A123-01 1 27107084 27107085 - GC ARID1A Frame_Shift_Ins p.A2234Gfs*34 0.58 TCGA-CC-A123-01 1 32121031 32121031 C T COL16A1 Missense_Mutation p.G1392S 0.40 unknown(0) TCGA-CC-A123-01 1 6530878 6530878 G A PLEKHG5 Missense_Mutation p.R566W 0.64 deleterious(0.01) probably_damaging(0.988) TCGA-CC-A123-01 1 77333366 77333366 G A ST6GALNAC5 Silent p.K2K 0.44 TCGA-CC-A123-01 20 44592119 44592119 G A ZNF335 Missense_Mutation p.S509L 0.19 deleterious(0) probably_damaging(0.999) TCGA-CC-A123-01 20 57246217 57246217 C A STX16 Missense_Mutation p.T219K 0.25 deleterious(0) benign(0.334) TCGA-CC-A123-01 20 58560154 58560154 C A CDH26 Missense_Mutation p.N269K 0.25 deleterious(0) probably_damaging(0.99) TCGA-CC-A123-01 21 37785409 37785409 C A CHAF1B Missense_Mutation p.P430H 0.37 deleterious(0) possibly_damaging(0.838) TCGA-CC-A123-01 21 45152259 45152259 A G PDXK Intron 0.48 TCGA-CC-A123-01 22 18385513 18385513 C A MICAL3 Missense_Mutation p.S158I 0.50 probably_damaging(0.948) TCGA-CC-A123-01 22 18385514 18385514 C A MICAL3 Splice_Site p.X158_splice 0.50 TCGA-CC-A123-01 22 50439551 50439551 G C IL17REL Missense_Mutation p.C23W 0.59 deleterious(0) probably_damaging(1) TCGA-CC-A123-01 22 50528805 50528805 C A MOV10L1 Intron 0.52 TCGA-CC-A123-01 2 1497607 1497607 C A TPO Missense_Mutation p.P601H 0.43 deleterious(0) probably_damaging(0.928) TCGA-CC-A123-01 2 16082220 16082220 A G MYCN Missense_Mutation p.M12V 0.43 tolerated(0.1) possibly_damaging(0.623) TCGA-CC-A123-01 2 179472788 179472788 G A TTN Missense_Mutation p.P17576S 0.45 TCGA-CC-A123-01 2 80846317 80846317 A T CTNNA2 Intron 0.06 TCGA-CC-A123-01 2 85066338 85066338 C G TRABD2A Missense_Mutation p.G260A 0.11 tolerated(0.44) probably_damaging(0.997) TCGA-CC-A123-01 2 9676045 9676045 G T ADAM17 Missense_Mutation p.P123H 0.07 tolerated(0.19) benign(0.014) TCGA-CC-A123-01 3 113464833 113464833 T C NAA50 5'UTR 0.38 TCGA-CC-A123-01 3 134348537 134348537 C A KY Missense_Mutation p.G88V 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.804) TCGA-CC-A123-01 3 155643090 155643090 A T GMPS Missense_Mutation p.M499L 0.68 tolerated(0.56) benign(0.001) TCGA-CC-A123-01 3 180381668 180381668 A C CCDC39 Missense_Mutation p.L66R 0.07 deleterious(0) benign(0.341) TCGA-CC-A123-01 3 28566047 28566047 A T ZCWPW2 Silent p.A313A 0.25 TCGA-CC-A123-01 3 37366808 37366808 A G GOLGA4 Missense_Mutation p.N1166S 0.55 benign(0.006) TCGA-CC-A123-01 3 45072316 45072316 C A CLEC3B Intron 0.34 TCGA-CC-A123-01 3 88041004 88041004 T C HTR1F 3'UTR 0.51 TCGA-CC-A123-01 3 9776191 9776191 G A BRPF1 Missense_Mutation p.E123K 0.60 deleterious(0) benign(0.107) TCGA-CC-A123-01 4 37447823 37447823 A C KIAA1239 Missense_Mutation p.I1405L 0.43 deleterious(0.05) benign(0.079) TCGA-CC-A123-01 4 71347032 71347032 G T MUC7 Missense_Mutation p.A191S 0.71 tolerated(0.12) unknown(0) TCGA-CC-A123-01 5 140741069 140741069 C T PCDHGB2 Missense_Mutation p.S456F 0.43 tolerated(0.06) benign(0.031) TCGA-CC-A123-01 5 141036086 141036086 C A ARAP3 Silent p.L1258L 0.39 TCGA-CC-A123-01 5 161318012 161318012 C T GABRA1 Missense_Mutation p.S271F 0.42 deleterious(0) possibly_damaging(0.761) TCGA-CC-A123-01 5 55260049 55260057 CAATGTTGA - IL6ST In_Frame_Del p.V192_I194del 0.36 TCGA-CC-A123-01 5 86637134 86637134 A T RASA1 Nonsense_Mutation p.K349* 0.34 TCGA-CC-A123-01 6 114264582 114264582 A T HDAC2 Missense_Mutation p.D437E 0.35 tolerated(0.23) benign(0.002) TCGA-CC-A123-01 6 32118206 32118206 G T PRRT1 Missense_Mutation p.P166H 0.20 deleterious_low_confidence(0) possibly_damaging(0.839) TCGA-CC-A123-01 6 33165688 33165688 C A RXRB Missense_Mutation p.G224V 0.22 deleterious(0) possibly_damaging(0.841) TCGA-CC-A123-01 6 54254816 54254816 G T TINAG 3'UTR 0.19 TCGA-CC-A123-01 6 71603895 71603895 G A B3GAT2 Silent p.N224N 0.24 TCGA-CC-A123-01 7 132192587 132192587 G A PLXNA4 Missense_Mutation p.A289V 0.42 deleterious(0.03) possibly_damaging(0.676) TCGA-CC-A123-01 7 149152476 149152476 G A ZNF777 Missense_Mutation p.T213M 0.39 tolerated(0.1) benign(0.203) TCGA-CC-A123-01 7 43484350 43484350 T A HECW1 Missense_Mutation p.S527T 0.34 tolerated_low_confidence(0.42) benign(0.001) TCGA-CC-A123-01 7 45005391 45005391 C T MYO1G Nonsense_Mutation p.W742* 0.57 TCGA-CC-A123-01 7 92730610 92730610 A G SAMD9 3'UTR 0.08 TCGA-CC-A123-01 7 97498423 97498423 C G ASNS Missense_Mutation p.V16L 0.31 tolerated(0.72) benign(0.049) TCGA-CC-A123-01 8 113662399 113662399 T C CSMD3 Missense_Mutation p.T1062A 0.23 tolerated(0.08) possibly_damaging(0.641) TCGA-CC-A123-01 8 116616801 116616801 T A TRPS1 Silent p.L465L 0.26 TCGA-CC-A123-01 8 133053841 133053841 C A OC90 Missense_Mutation p.R92L 0.33 deleterious(0) probably_damaging(1) TCGA-CC-A123-01 9 129157873 129157873 A G MVB12B Missense_Mutation p.I187V 0.35 tolerated(0.11) probably_damaging(0.954) TCGA-CC-A123-01 9 130912582 130912582 G A LCN2 Silent p.P68P 0.48 TCGA-CC-A123-01 9 136269044 136269044 G T C9orf96 Missense_Mutation p.G535V 0.28 deleterious(0) probably_damaging(0.999) TCGA-CC-A123-01 9 140127320 140127320 C T SLC34A3 Missense_Mutation p.A130V 0.09 tolerated(1) benign(0.001) TCGA-CC-A123-01 9 95155366 95155366 A T OGN Splice_Site p.X143_splice 0.44 TCGA-CC-A123-01 X 102755566 102755566 T A RAB40A Missense_Mutation p.E40V 0.39 tolerated(0.07) benign(0.057) TCGA-CC-A123-01 X 129629661 129629666 CTGATG - RP1-274L7.1 Intron 0.23 TCGA-CC-A123-01 X 131212315 131212315 G A FRMD7 Missense_Mutation p.A577V 0.46 tolerated(0.24) benign(0.004) TCGA-CC-A123-01 X 135292200 135292200 T A FHL1 3'UTR 0.52 TCGA-CC-A123-01 X 19017392 19017392 C A GPR64 Missense_Mutation p.W779L 0.10 deleterious(0) probably_damaging(0.999) TCGA-CC-A123-01 X 73811891 73811891 A T RLIM Missense_Mutation p.M420K 0.47 deleterious(0.03) unknown(0) TCGA-CC-A123-01 X 83128877 83128877 G T CYLC1 Missense_Mutation p.L387F 0.52 deleterious(0.05) unknown(0) TCGA-CC-A1HT-01 10 17686236 17686236 C T STAM 5'UTR 0.19 TCGA-CC-A1HT-01 10 32582635 32582635 T C EPC1 Missense_Mutation p.Y115C 0.13 deleterious(0) probably_damaging(1) TCGA-CC-A1HT-01 11 105842667 105842667 A C GRIA4 Missense_Mutation p.K774T 0.20 tolerated(0.11) probably_damaging(0.975) TCGA-CC-A1HT-01 11 47744730 47744730 G T FNBP4 Missense_Mutation p.A868E 0.17 deleterious_low_confidence(0) benign(0.219) TCGA-CC-A1HT-01 11 55541610 55541610 G A OR5D13 Missense_Mutation p.A233T 0.10 tolerated(0.55) benign(0.001) TCGA-CC-A1HT-01 11 57512606 57512606 G T BTBD18 Missense_Mutation p.T380N 0.07 tolerated(0.05) benign(0) TCGA-CC-A1HT-01 11 58893210 58893210 T G FAM111B Missense_Mutation p.I547S 0.20 deleterious(0) probably_damaging(0.959) TCGA-CC-A1HT-01 11 61537931 61537931 C T MYRF Missense_Mutation p.P225L 0.13 deleterious(0) probably_damaging(0.997) TCGA-CC-A1HT-01 11 73104879 73104879 C T RELT Intron 0.09 TCGA-CC-A1HT-01 11 92085831 92085831 G T FAT3 Missense_Mutation p.A185S 0.15 probably_damaging(1) TCGA-CC-A1HT-01 12 133358985 133358985 A C GOLGA3 Missense_Mutation p.L1121R 0.16 deleterious(0) probably_damaging(0.978) TCGA-CC-A1HT-01 12 21445184 21445184 C A SLCO1A2 Missense_Mutation p.L508F 0.08 tolerated(0.08) benign(0.126) TCGA-CC-A1HT-01 12 31605091 31605092 - T DENND5B Frame_Shift_Ins p.M471Nfs*9 0.17 TCGA-CC-A1HT-01 12 50152248 50152248 T C TMBIM6 Missense_Mutation p.Y198H 0.11 tolerated(0.09) benign(0.18) TCGA-CC-A1HT-01 12 5603521 5603521 G A NTF3 Silent p.K60K 0.16 TCGA-CC-A1HT-01 12 99019886 99019886 A G IKBIP Missense_Mutation p.M319T 0.17 tolerated(0.13) benign(0.122) TCGA-CC-A1HT-01 13 28883065 28883065 C G FLT1 Splice_Site p.X1212_splice 0.12 TCGA-CC-A1HT-01 13 72204825 72204825 G T DACH1 Missense_Mutation p.A332D 0.32 probably_damaging(0.996) TCGA-CC-A1HT-01 14 55848812 55848812 G A ATG14 Nonsense_Mutation p.R249* 0.22 TCGA-CC-A1HT-01 14 56233027 56233027 G - RP11-813I20.2 Intron 0.11 TCGA-CC-A1HT-01 14 67862126 67862126 T C PLEK2 Missense_Mutation p.S128G 0.11 deleterious(0.02) benign(0.218) TCGA-CC-A1HT-01 14 73965006 73965006 A G HEATR4 Missense_Mutation p.L800P 0.08 deleterious(0.02) possibly_damaging(0.828) TCGA-CC-A1HT-01 15 33357071 33357071 C T FMN1 Intron 0.13 TCGA-CC-A1HT-01 15 43749109 43749109 G C TP53BP1 Missense_Mutation p.P566R 0.19 tolerated(0.4) benign(0.008) TCGA-CC-A1HT-01 15 83926506 83926506 A G BNC1 Silent p.D891D 0.23 TCGA-CC-A1HT-01 15 96875607 96875608 CG - NR2F2 Nonsense_Mutation p.Y91* 0.17 TCGA-CC-A1HT-01 16 51173735 51173735 C T SALL1 Missense_Mutation p.D800N 0.04 deleterious(0) benign(0.373) TCGA-CC-A1HT-01 16 601376 601376 G A CAPN15 Missense_Mutation p.R714H 0.14 deleterious(0.03) probably_damaging(1) TCGA-CC-A1HT-01 16 68087464 68087464 C T DUS2 Intron 0.18 TCGA-CC-A1HT-01 16 70884548 70884548 C T HYDIN Missense_Mutation p.D4152N 0.16 possibly_damaging(0.908) TCGA-CC-A1HT-01 17 20358687 20358687 G T LGALS9B Missense_Mutation p.P157T 0.19 deleterious(0.01) possibly_damaging(0.733) TCGA-CC-A1HT-01 17 39742690 39742690 C T KRT14 Missense_Mutation p.V133M 0.24 deleterious(0.01) probably_damaging(0.986) TCGA-CC-A1HT-01 17 40961398 40961398 C A CNTD1 Missense_Mutation p.Q280K 0.19 tolerated(0.3) benign(0.02) TCGA-CC-A1HT-01 17 56065494 56065494 T C VEZF1 5'UTR 0.18 TCGA-CC-A1HT-01 17 63545764 63545765 CT - AXIN2 Frame_Shift_Del p.S277Rfs*4 0.11 TCGA-CC-A1HT-01 17 72998268 72998268 C T CDR2L Missense_Mutation p.R151C 0.21 deleterious(0) possibly_damaging(0.821) TCGA-CC-A1HT-01 17 7343007 7343007 C T FGF11 Missense_Mutation p.P23L 0.15 tolerated_low_confidence(0.08) benign(0.122) TCGA-CC-A1HT-01 17 73569581 73569581 C G LLGL2 Silent p.P915P 0.18 TCGA-CC-A1HT-01 17 7578555 7578555 C T TP53 Splice_Site p.X126_splice 0.17 TCGA-CC-A1HT-01 19 1438803 1438803 C T RPS15 Intron 0.18 TCGA-CC-A1HT-01 19 20002465 20002465 A T ZNF253 Missense_Mutation p.T137S 0.17 tolerated(0.44) probably_damaging(0.97) TCGA-CC-A1HT-01 19 44934680 44934680 A G ZNF229 Silent p.D92D 0.08 TCGA-CC-A1HT-01 19 59059680 59059680 G A TRIM28 Missense_Mutation p.R374Q 0.25 deleterious(0.01) benign(0.337) TCGA-CC-A1HT-01 19 7505118 7505118 T A ARHGEF18 Missense_Mutation p.S98T 0.15 tolerated_low_confidence(0.21) benign(0.007) TCGA-CC-A1HT-01 19 9024161 9024161 T A MUC16 Missense_Mutation p.T12371S 0.09 possibly_damaging(0.702) TCGA-CC-A1HT-01 19 9048323 9048323 G T MUC16 Missense_Mutation p.T11103N 0.16 possibly_damaging(0.506) TCGA-CC-A1HT-01 19 9048324 9048324 T G MUC16 Missense_Mutation p.T11103P 0.16 benign(0.022) TCGA-CC-A1HT-01 1 151108527 151108527 G T SEMA6C Missense_Mutation p.P407T 0.37 deleterious(0) possibly_damaging(0.825) TCGA-CC-A1HT-01 1 158623173 158623173 G T SPTA1 Missense_Mutation p.P1027T 0.41 deleterious(0) probably_damaging(0.914) TCGA-CC-A1HT-01 1 185970862 185970862 T A HMCN1 Missense_Mutation p.I1446N 0.23 possibly_damaging(0.609) TCGA-CC-A1HT-01 1 216896739 216896739 G A ESRRG 5'UTR 0.35 TCGA-CC-A1HT-01 1 247614391 247614391 A G OR2B11 Silent p.N298N 0.15 TCGA-CC-A1HT-01 1 248059698 248059698 G T OR2W3 Missense_Mutation p.Q270H 0.23 tolerated(0.05) probably_damaging(0.967) TCGA-CC-A1HT-01 1 76365354 76365354 C T MSH4 Missense_Mutation p.A861V 0.06 deleterious(0) probably_damaging(1) TCGA-CC-A1HT-01 20 14307370 14307370 C T FLRT3 Silent p.R261R 0.21 TCGA-CC-A1HT-01 20 2321189 2321189 G T TGM3 Missense_Mutation p.A682S 0.10 tolerated(0.12) probably_damaging(0.955) TCGA-CC-A1HT-01 20 48523374 48523374 C A SPATA2 Silent p.T115T 0.09 TCGA-CC-A1HT-01 22 19223332 19223332 C G CLTCL1 Missense_Mutation p.D286H 0.22 deleterious(0) probably_damaging(1) TCGA-CC-A1HT-01 22 30069414 30069414 G T NF2 Nonsense_Mutation p.E427* 0.25 TCGA-CC-A1HT-01 22 38696748 38696748 G C CSNK1E Missense_Mutation p.I182M 0.27 tolerated_low_confidence(0.13) possibly_damaging(0.775) TCGA-CC-A1HT-01 2 131520957 131520957 C A AMER3 Missense_Mutation p.P438T 0.14 deleterious(0) benign(0.288) TCGA-CC-A1HT-01 2 141812802 141812802 G A LRP1B Missense_Mutation p.P479S 0.13 possibly_damaging(0.641) TCGA-CC-A1HT-01 2 165551580 165551580 T A COBLL1 Missense_Mutation p.K812N 0.17 deleterious(0.01) possibly_damaging(0.511) TCGA-CC-A1HT-01 2 179395002 179395002 G C TTN Missense_Mutation p.P35447R 0.16 TCGA-CC-A1HT-01 2 1812887 1812887 C T MYT1L Missense_Mutation p.G1043R 0.15 deleterious(0) possibly_damaging(0.838) TCGA-CC-A1HT-01 2 207170909 207170909 C - ZDBF2 Frame_Shift_Del p.P554Qfs*39 0.16 TCGA-CC-A1HT-01 2 217724619 217724619 C A TNP1 Missense_Mutation p.A47S 0.20 tolerated_low_confidence(0.08) benign(0.021) TCGA-CC-A1HT-01 2 241622316 241622316 G A AQP12B 5'UTR 0.23 TCGA-CC-A1HT-01 2 277013 277013 C T ACP1 Silent p.T109T 0.15 TCGA-CC-A1HT-01 2 32859027 32859027 C T TTC27 Silent p.H117H 0.17 TCGA-CC-A1HT-01 2 70066643 70066643 A G GMCL1 Missense_Mutation p.I147V 0.19 tolerated(0.57) benign(0.004) TCGA-CC-A1HT-01 3 11606425 11606426 GC - VGLL4 Frame_Shift_Del p.A114Cfs*98 0.18 TCGA-CC-A1HT-01 3 129151263 129151266 AATA - MBD4 Intron 0.24 TCGA-CC-A1HT-01 3 138426053 138426053 A G PIK3CB Missense_Mutation p.V493A 0.14 deleterious(0) benign(0.099) TCGA-CC-A1HT-01 3 140401304 140401304 C A TRIM42 Silent p.S114S 0.14 TCGA-CC-A1HT-01 3 147131461 147131461 T C ZIC1 3'UTR 0.30 TCGA-CC-A1HT-01 3 148923993 148923993 T C CP Missense_Mutation p.I390M 0.23 tolerated(0.24) benign(0.024) TCGA-CC-A1HT-01 3 154890002 154890002 G T MME Splice_Site p.X692_splice 0.16 TCGA-CC-A1HT-01 3 183967178 183967178 T C ALG3 5'Flank 0.10 TCGA-CC-A1HT-01 3 184045645 184045645 G A EIF4G1 Missense_Mutation p.A1277T 0.30 deleterious(0.03) benign(0.122) TCGA-CC-A1HT-01 3 44449032 44449032 T G TCAIM Missense_Mutation p.V450G 0.15 deleterious(0) possibly_damaging(0.517) TCGA-CC-A1HT-01 3 50396005 50396005 C T TMEM115 Missense_Mutation p.V164M 0.24 tolerated(0.16) possibly_damaging(0.809) TCGA-CC-A1HT-01 3 9991578 9991578 A G PRRT3 Silent p.D74D 0.21 TCGA-CC-A1HT-01 4 104640417 104640417 G T TACR3 Missense_Mutation p.T139K 0.14 deleterious(0) probably_damaging(0.994) TCGA-CC-A1HT-01 4 119154261 119154261 T C NDST3 Silent p.N638N 0.19 TCGA-CC-A1HT-01 4 155226013 155226013 C A DCHS2 Nonsense_Mutation p.G1350* 0.16 TCGA-CC-A1HT-01 4 185038169 185038169 C T ENPP6 Missense_Mutation p.R232H 0.18 tolerated(0.08) benign(0) TCGA-CC-A1HT-01 4 66361224 66361224 G A EPHA5 Silent p.I316I 0.18 TCGA-CC-A1HT-01 4 71346814 71346814 C T MUC7 Missense_Mutation p.S118L 0.20 deleterious(0.01) possibly_damaging(0.895) TCGA-CC-A1HT-01 4 79328918 79328918 C T FRAS1 Nonsense_Mutation p.Q1411* 0.14 TCGA-CC-A1HT-01 4 79455713 79455713 C T FRAS1 Missense_Mutation p.P3679L 0.16 probably_damaging(0.985) TCGA-CC-A1HT-01 5 140210049 140210049 A G PCDHA6 Silent p.L791L 0.08 TCGA-CC-A1HT-01 5 140432442 140432442 G A PCDHB1 Missense_Mutation p.E463K 0.15 deleterious(0) probably_damaging(0.998) TCGA-CC-A1HT-01 5 140753695 140753695 G T PCDHGA6 Silent p.L15L 0.27 TCGA-CC-A1HT-01 5 169483728 169483728 C T DOCK2 Missense_Mutation p.R1446W 0.09 deleterious(0.01) possibly_damaging(0.703) TCGA-CC-A1HT-01 5 180662489 180662489 A G TRIM41 3'UTR 0.26 TCGA-CC-A1HT-01 6 152674871 152674871 G T SYNE1 Missense_Mutation p.H3645Q 0.17 benign(0.008) TCGA-CC-A1HT-01 6 38781906 38781906 G T DNAH8 Splice_Site p.X894_splice 0.14 TCGA-CC-A1HT-01 6 94124469 94124469 A T EPHA7 Silent p.S38S 0.14 TCGA-CC-A1HT-01 7 104787043 104787043 C T SRPK2 Silent p.P228P 0.10 TCGA-CC-A1HT-01 7 122787291 122787291 G C SLC13A1 Missense_Mutation p.A245G 0.17 deleterious(0.01) probably_damaging(0.923) TCGA-CC-A1HT-01 7 135269705 135269705 C T NUP205 Missense_Mutation p.R390C 0.13 deleterious(0) probably_damaging(1) TCGA-CC-A1HT-01 7 1517435 1517435 C T INTS1 Missense_Mutation p.E1590K 0.14 tolerated(0.06) benign(0.011) TCGA-CC-A1HT-01 7 154263941 154263941 C T DPP6 Silent p.A189A 0.12 TCGA-CC-A1HT-01 7 20445703 20445703 T A ITGB8 Silent p.L644L 0.17 TCGA-CC-A1HT-01 7 31877505 31877505 G A PDE1C Missense_Mutation p.T414I 0.13 deleterious(0.01) benign(0.009) TCGA-CC-A1HT-01 7 57509917 57509917 T G ZNF716 5'UTR 0.16 TCGA-CC-A1HT-01 7 72178586 72178586 C - TYW1B Frame_Shift_Del p.E81Kfs*23 0.20 TCGA-CC-A1HT-01 7 73152420 73152420 C A ABHD11 Intron 0.21 TCGA-CC-A1HT-01 7 73152421 73152421 C A ABHD11 Intron 0.21 TCGA-CC-A1HT-01 7 75988086 75988086 C T YWHAG Missense_Mutation p.A14T 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.588) TCGA-CC-A1HT-01 7 87196165 87196165 T A ABCB1 Missense_Mutation p.M156L 0.15 tolerated(1) benign(0.027) TCGA-CC-A1HT-01 7 92085899 92085899 C T GATAD1 3'UTR 0.09 TCGA-CC-A1HT-01 8 143993483 143993483 T C CYP11B2 Silent p.T475T 0.37 TCGA-CC-A1HT-01 8 3081364 3081364 G T CSMD1 Silent p.G1457G 0.11 TCGA-CC-A1HT-01 8 56922769 56922769 A C LYN 3'UTR 0.30 TCGA-CC-A1HT-01 8 67492397 67492397 A G MYBL1 Missense_Mutation p.F358L 0.09 deleterious(0) probably_damaging(0.913) TCGA-CC-A1HT-01 8 67752248 67752248 A G SGK3 Missense_Mutation p.H251R 0.39 deleterious(0) possibly_damaging(0.634) TCGA-CC-A1HT-01 9 115913317 115913317 A G SLC31A2 5'UTR 0.11 TCGA-CC-A1HT-01 9 135537950 135537950 C T DDX31 Missense_Mutation p.A175T 0.08 tolerated(0.39) benign(0.001) TCGA-CC-A1HT-01 9 140151427 140151427 A G NELFB Missense_Mutation p.E173G 0.12 deleterious(0) probably_damaging(0.997) TCGA-CC-A1HT-01 X 114238625 114238625 T A IL13RA2 3'UTR 0.28 TCGA-CC-A1HT-01 X 140985121 140985121 A G MAGEC3 Missense_Mutation p.E526G 0.50 tolerated(0.06) possibly_damaging(0.707) TCGA-CC-A1HT-01 X 151821044 151821044 C A GABRQ Missense_Mutation p.P400H 0.38 tolerated(0.1) benign(0.126) TCGA-CC-A1HT-01 X 154013425 154013425 C T MPP1 Missense_Mutation p.A229T 0.42 deleterious(0.04) probably_damaging(0.999) TCGA-CC-A1HT-01 X 155007042 155007042 C T SPRY3 3'UTR 0.15 TCGA-CC-A1HT-01 X 155239667 155239667 C A IL9R Missense_Mutation p.L387M 0.14 tolerated(0.22) possibly_damaging(0.66) TCGA-CC-A1HT-01 X 19418728 19418728 T C MAP3K15 Missense_Mutation p.E633G 0.10 deleterious(0.03) benign(0.071) TCGA-CC-A1HT-01 Y 4967591 4967591 C A PCDH11Y Silent p.R658R 0.30 TCGA-CC-A3M9-01 10 108389095 108389095 C T SORCS1 Missense_Mutation p.V843M 0.09 deleterious(0.02) possibly_damaging(0.517) TCGA-CC-A3M9-01 10 115986999 115986999 T G TDRD1 Missense_Mutation p.L1115R 0.32 deleterious(0) probably_damaging(0.955) TCGA-CC-A3M9-01 10 118458224 118458224 C A HSPA12A Silent p.T156T 0.30 TCGA-CC-A3M9-01 10 124377713 124377713 C A DMBT1 Missense_Mutation p.A1562D 0.23 deleterious(0) probably_damaging(0.951) TCGA-CC-A3M9-01 10 25861801 25861801 T A GPR158 Missense_Mutation p.Y580N 0.17 deleterious(0) probably_damaging(0.992) TCGA-CC-A3M9-01 10 34690758 34690758 G C PARD3 Missense_Mutation p.L268V 0.10 tolerated(0.1) possibly_damaging(0.77) TCGA-CC-A3M9-01 10 48413759 48413759 G A GDF2 Missense_Mutation p.P370L 0.13 deleterious(0.03) probably_damaging(0.934) TCGA-CC-A3M9-01 10 55568668 55568668 A T PCDH15 Silent p.A648A 0.24 TCGA-CC-A3M9-01 10 94369152 94369152 T C KIF11 Missense_Mutation p.I195T 0.13 deleterious(0.03) benign(0.375) TCGA-CC-A3M9-01 11 109294862 109294862 C A C11orf87 Missense_Mutation p.P168Q 0.27 tolerated_low_confidence(0.08) benign(0.028) TCGA-CC-A3M9-01 11 117710551 117710551 A G FXYD6 Intron 0.14 TCGA-CC-A3M9-01 11 118972928 118972928 G T DPAGT1 5'UTR 0.15 TCGA-CC-A3M9-01 11 123065715 123065715 C G CLMP 5'UTR 0.17 TCGA-CC-A3M9-01 11 1858034 1858034 T A SYT8 Missense_Mutation p.S259T 0.10 tolerated(0.39) benign(0.145) TCGA-CC-A3M9-01 11 18955787 18955787 G A MRGPRX1 Missense_Mutation p.A182V 0.12 tolerated(0.09) benign(0.047) TCGA-CC-A3M9-01 11 1955638 1955638 C T TNNT3 Missense_Mutation p.S148F 0.14 deleterious(0) probably_damaging(0.936) TCGA-CC-A3M9-01 11 27681097 27681097 T C BDNF Intron 0.30 TCGA-CC-A3M9-01 11 66384504 66384504 G T RBM14-RBM4 Missense_Mutation p.V105F 0.11 deleterious(0) possibly_damaging(0.906) TCGA-CC-A3M9-01 11 8496345 8496345 T C STK33 Silent p.P36P 0.22 TCGA-CC-A3M9-01 11 94040391 94040391 G A FOLR4 Missense_Mutation p.E130K 0.11 deleterious(0.02) probably_damaging(0.928) TCGA-CC-A3M9-01 12 113901064 113901064 G T LHX5 Missense_Mutation p.S380R 0.38 tolerated(0.24) possibly_damaging(0.491) TCGA-CC-A3M9-01 12 121432040 121432040 C G HNF1A Missense_Mutation p.R263G 0.09 deleterious(0) probably_damaging(0.998) TCGA-CC-A3M9-01 12 133384623 133384623 C A GOLGA3 Missense_Mutation p.M344I 0.26 tolerated_low_confidence(0.07) benign(0.008) TCGA-CC-A3M9-01 12 14953690 14953690 T C WBP11 Missense_Mutation p.K31R 0.08 deleterious(0.01) unknown(0) TCGA-CC-A3M9-01 12 51759243 51759243 G C GALNT6 Missense_Mutation p.A262G 0.10 tolerated(1) benign(0.03) TCGA-CC-A3M9-01 12 57031999 57031999 T C ATP5B 3'UTR 0.41 TCGA-CC-A3M9-01 13 24384001 24384001 A G MIPEP Silent p.D572D 0.08 TCGA-CC-A3M9-01 13 60413570 60413570 G A DIAPH3 Missense_Mutation p.T917M 0.23 tolerated(0.27) benign(0.025) TCGA-CC-A3M9-01 13 67205348 67205348 T C PCDH9 Missense_Mutation p.N1112D 0.19 tolerated(0.54) benign(0.155) TCGA-CC-A3M9-01 13 67799512 67799512 T C PCDH9 Intron 0.13 TCGA-CC-A3M9-01 13 76140947 76140947 G A UCHL3 Silent p.L100L 0.14 TCGA-CC-A3M9-01 14 104642658 104642658 G T KIF26A Missense_Mutation p.G1178V 0.32 tolerated(0.28) benign(0.002) TCGA-CC-A3M9-01 14 105693005 105693005 T C BRF1 Missense_Mutation p.Y294C 0.29 deleterious(0) possibly_damaging(0.765) TCGA-CC-A3M9-01 14 57083958 57083958 A G TMEM260 Silent p.S333S 0.12 TCGA-CC-A3M9-01 14 77311222 77311222 G A C14orf166B Silent p.G235G 0.34 TCGA-CC-A3M9-01 14 79269978 79269978 G A NRXN3 Missense_Mutation p.S314N 0.26 deleterious(0.04) probably_damaging(0.933) TCGA-CC-A3M9-01 14 88792848 88792848 C T KCNK10 5'Flank 0.24 TCGA-CC-A3M9-01 15 23326035 23326035 C G HERC2P2 RNA 0.11 TCGA-CC-A3M9-01 15 25616256 25616256 A G UBE3A Silent p.S358S 0.16 TCGA-CC-A3M9-01 15 45393403 45393403 C T DUOX2 Missense_Mutation p.R974H 0.07 tolerated(0.06) benign(0.24) TCGA-CC-A3M9-01 15 48500027 48500027 T A SLC12A1 Missense_Mutation p.D37E 0.30 tolerated(0.55) benign(0.014) TCGA-CC-A3M9-01 15 49135766 49135766 C T SHC4 Silent p.G441G 0.31 TCGA-CC-A3M9-01 15 54306041 54306041 A G UNC13C Missense_Mutation p.H314R 0.11 tolerated_low_confidence(0.16) benign(0.147) TCGA-CC-A3M9-01 15 76165791 76165791 A G UBE2Q2 Missense_Mutation p.Y157C 0.15 deleterious(0.04) benign(0.005) TCGA-CC-A3M9-01 15 89417182 89417182 C A ACAN Silent p.V2481V 0.10 TCGA-CC-A3M9-01 16 29811026 29811026 C T KIF22 Silent p.V356V 0.17 TCGA-CC-A3M9-01 16 65038624 65038624 C T CDH11 Missense_Mutation p.R50H 0.19 deleterious(0) possibly_damaging(0.765) TCGA-CC-A3M9-01 16 65038770 65038770 C A CDH11 Translation_Start_Site p.M1? 0.22 tolerated_low_confidence(0.21) benign(0.026) TCGA-CC-A3M9-01 16 65038778 65038778 G T CDH11 5'UTR 0.23 TCGA-CC-A3M9-01 16 69959360 69959360 C T WWP2 Missense_Mutation p.P403S 0.24 deleterious(0.04) possibly_damaging(0.541) TCGA-CC-A3M9-01 16 74496078 74496078 A G GLG1 Missense_Mutation p.C984R 0.08 deleterious(0) probably_damaging(1) TCGA-CC-A3M9-01 16 86612389 86612389 G C FOXL1 Silent p.L20L 0.11 TCGA-CC-A3M9-01 17 10432947 10432947 C T MYH2 Silent p.Q1017Q 0.48 TCGA-CC-A3M9-01 17 28511699 28511699 A G NSRP1 Silent p.P228P 0.05 TCGA-CC-A3M9-01 17 3324438 3324438 C T OR3A3 Missense_Mutation p.L193F 0.04 deleterious(0.01) probably_damaging(1) TCGA-CC-A3M9-01 17 42475028 42475028 C A GPATCH8 Missense_Mutation p.A1473S 0.19 deleterious(0.02) unknown(0) TCGA-CC-A3M9-01 17 45885990 45885990 G A OSBPL7 Silent p.A778A 0.15 TCGA-CC-A3M9-01 17 4841826 4841826 C T SLC25A11 Missense_Mutation p.G176D 0.07 deleterious(0.01) probably_damaging(0.94) TCGA-CC-A3M9-01 17 66267772 66267772 T C SLC16A6 Missense_Mutation p.I177V 0.18 tolerated(0.19) benign(0.032) TCGA-CC-A3M9-01 17 7577534 7577534 C A TP53 Missense_Mutation p.R249S 0.53 deleterious(0) probably_damaging(0.994) TCGA-CC-A3M9-01 17 76113656 76113656 C A TMC6 Missense_Mutation p.W697C 0.31 deleterious(0) probably_damaging(0.926) TCGA-CC-A3M9-01 18 13049219 13049219 A T CEP192 Missense_Mutation p.D810V 0.13 deleterious(0) probably_damaging(0.985) TCGA-CC-A3M9-01 18 19263896 19263896 C T ABHD3 Silent p.A180A 0.21 TCGA-CC-A3M9-01 18 2610833 2610833 G A NDC80 Missense_Mutation p.M588I 0.12 tolerated(0.26) benign(0.017) TCGA-CC-A3M9-01 18 34646878 34646878 A G KIAA1328 Missense_Mutation p.Q201R 0.23 tolerated(0.16) benign(0.004) TCGA-CC-A3M9-01 18 51025767 51025767 C T DCC Missense_Mutation p.T1333I 0.13 deleterious(0.03) probably_damaging(0.953) TCGA-CC-A3M9-01 18 7023225 7023225 G T LAMA1 Missense_Mutation p.A880D 0.08 tolerated(0.53) benign(0.008) TCGA-CC-A3M9-01 18 74962595 74962595 G A GALR1 Missense_Mutation p.V31M 0.14 tolerated(0.08) benign(0.109) TCGA-CC-A3M9-01 19 12155914 12155914 G A ZNF878 Missense_Mutation p.S101L 0.23 tolerated(0.2) benign(0.392) TCGA-CC-A3M9-01 19 12575313 12575313 G A ZNF709 Missense_Mutation p.P475S 0.20 deleterious(0) possibly_damaging(0.854) TCGA-CC-A3M9-01 19 19822650 19822650 A G ZNF14 Silent p.C480C 0.18 TCGA-CC-A3M9-01 19 23836584 23836584 G A ZNF675 Missense_Mutation p.T384M 0.21 deleterious(0.03) probably_damaging(0.938) TCGA-CC-A3M9-01 19 36236067 36236067 C T U2AF1L4 Missense_Mutation p.D31N 0.34 deleterious(0.02) possibly_damaging(0.749) TCGA-CC-A3M9-01 19 37676268 37676268 C G ZNF585B Missense_Mutation p.G724A 0.22 deleterious(0) probably_damaging(0.934) TCGA-CC-A3M9-01 19 40485836 40485836 C G PSMC4 Missense_Mutation p.I262M 0.20 deleterious(0.02) probably_damaging(0.989) TCGA-CC-A3M9-01 19 407975 407975 G A C2CD4C Silent p.D129D 0.23 TCGA-CC-A3M9-01 19 43969676 43969676 T A LYPD3 Silent p.A16A 0.21 TCGA-CC-A3M9-01 19 4550257 4550257 C T SEMA6B Missense_Mutation p.M383I 0.22 tolerated(0.26) benign(0.049) TCGA-CC-A3M9-01 19 45853937 45853937 G A KLC3 Silent p.E437E 0.22 TCGA-CC-A3M9-01 19 45924624 45924624 T C ERCC1 Missense_Mutation p.S45G 0.15 deleterious_low_confidence(0.04) benign(0.003) TCGA-CC-A3M9-01 19 47569634 47569634 C A ZC3H4 Silent p.T1297T 0.19 TCGA-CC-A3M9-01 19 48257974 48257974 A G GLTSCR2 Silent p.T293T 0.08 TCGA-CC-A3M9-01 19 49574011 49574011 C A KCNA7 Missense_Mutation p.R227L 0.30 deleterious(0) probably_damaging(0.999) TCGA-CC-A3M9-01 19 52249985 52249985 C A FPR1 Missense_Mutation p.G88V 0.19 tolerated(0.07) benign(0.155) TCGA-CC-A3M9-01 19 53886793 53886793 A T ZNF525 3'UTR 0.22 TCGA-CC-A3M9-01 19 55670500 55670500 T C DNAAF3 Missense_Mutation p.E586G 0.23 deleterious_low_confidence(0) possibly_damaging(0.56) TCGA-CC-A3M9-01 19 55715293 55715293 T C PTPRH Missense_Mutation p.D248G 0.20 unknown(0) TCGA-CC-A3M9-01 19 9011461 9011461 A G MUC16 Silent p.D12924D 0.07 TCGA-CC-A3M9-01 1 109273448 109273448 C T FNDC7 Missense_Mutation p.L593F 0.18 deleterious(0.01) possibly_damaging(0.774) TCGA-CC-A3M9-01 1 114454510 114454510 A G DCLRE1B Silent p.S432S 0.16 TCGA-CC-A3M9-01 1 12907411 12907411 T C HNRNPCL1 Silent p.A244A 0.07 TCGA-CC-A3M9-01 1 153012330 153012330 A T SPRR2D 3'UTR 0.27 TCGA-CC-A3M9-01 1 154543762 154543762 T C CHRNB2 Missense_Mutation p.C155R 0.15 deleterious(0) probably_damaging(1) TCGA-CC-A3M9-01 1 156901780 156901780 A G LRRC71 Missense_Mutation p.M468V 0.09 tolerated(0.06) benign(0.016) TCGA-CC-A3M9-01 1 162688873 162688873 T C DDR2 Missense_Mutation p.M7T 0.22 tolerated_low_confidence(0.67) unknown(0) TCGA-CC-A3M9-01 1 205568282 205568282 T C MFSD4 Silent p.Y464Y 0.22 TCGA-CC-A3M9-01 1 236399588 236399588 T A ERO1LB Missense_Mutation p.N206Y 0.05 deleterious(0) probably_damaging(0.991) TCGA-CC-A3M9-01 1 243291604 243291604 T A CEP170 Splice_Site p.X1472_splice 0.12 TCGA-CC-A3M9-01 1 243328135 243328135 C T CEP170 Missense_Mutation p.D1043N 0.10 deleterious(0) probably_damaging(0.999) TCGA-CC-A3M9-01 1 247464447 247464447 C A ZNF496 Nonsense_Mutation p.E380* 0.31 TCGA-CC-A3M9-01 1 248039390 248039390 G A TRIM58 Missense_Mutation p.E354K 0.06 tolerated(0.07) benign(0.033) TCGA-CC-A3M9-01 1 32158742 32158742 T A COL16A1 Missense_Mutation p.E341V 0.15 unknown(0) TCGA-CC-A3M9-01 1 3425655 3425655 C T MEGF6 Silent p.T504T 0.31 TCGA-CC-A3M9-01 1 34498286 34498286 T G CSMD2 Silent p.P102P 0.13 TCGA-CC-A3M9-01 1 35228129 35228129 A T GJB4 3'UTR 0.25 TCGA-CC-A3M9-01 1 40980542 40980542 A G EXO5 Missense_Mutation p.E109G 0.11 deleterious(0) benign(0.063) TCGA-CC-A3M9-01 1 41304173 41304173 C T KCNQ4 Missense_Mutation p.S689L 0.09 deleterious(0) benign(0.275) TCGA-CC-A3M9-01 1 6880251 6880251 A G CAMTA1 Missense_Mutation p.Q19R 0.10 deleterious_low_confidence(0.04) benign(0.014) TCGA-CC-A3M9-01 1 84963309 84963309 G T RPF1 3'UTR 0.14 TCGA-CC-A3M9-01 1 95364951 95364951 C T CNN3 Missense_Mutation p.M208I 0.21 deleterious(0.02) possibly_damaging(0.53) TCGA-CC-A3M9-01 20 34515736 34515736 G T PHF20 Missense_Mutation p.C680F 0.37 deleterious(0) probably_damaging(1) TCGA-CC-A3M9-01 20 62284771 62284771 C T STMN3 5'UTR 0.19 TCGA-CC-A3M9-01 21 15481268 15481268 A T LIPI 3'UTR 0.12 TCGA-CC-A3M9-01 21 38597864 38597864 A T DSCR3 Missense_Mutation p.L292Q 0.18 deleterious(0) possibly_damaging(0.819) TCGA-CC-A3M9-01 22 29956787 29956787 G A NIPSNAP1 Silent p.N214N 0.06 TCGA-CC-A3M9-01 22 32072911 32072911 C A PRR14L 3'Flank 0.16 TCGA-CC-A3M9-01 22 36892113 36892113 C A FOXRED2 Missense_Mutation p.D509Y 0.12 deleterious(0) probably_damaging(1) TCGA-CC-A3M9-01 22 37602722 37602722 A T SSTR3 Missense_Mutation p.V374D 0.29 deleterious(0) benign(0.265) TCGA-CC-A3M9-01 22 41763523 41763523 C T TEF 5'UTR 0.08 TCGA-CC-A3M9-01 2 125555776 125555776 A T CNTNAP5 Silent p.T1031T 0.27 TCGA-CC-A3M9-01 2 128247424 128247424 G A IWS1 Nonsense_Mutation p.R715* 0.15 TCGA-CC-A3M9-01 2 128461010 128461010 G A WDR33 3'UTR 0.16 TCGA-CC-A3M9-01 2 168099492 168099492 C G XIRP2 Missense_Mutation p.N530K 0.11 benign(0.03) TCGA-CC-A3M9-01 2 171259467 171259467 C G MYO3B Missense_Mutation p.Q747E 0.15 deleterious(0) probably_damaging(0.91) TCGA-CC-A3M9-01 2 192160940 192160940 T G MYO1B Missense_Mutation p.L80R 0.25 deleterious(0) benign(0.41) TCGA-CC-A3M9-01 2 210699734 210699734 A T UNC80 Missense_Mutation p.H1014L 0.28 possibly_damaging(0.889) TCGA-CC-A3M9-01 2 210818977 210818977 T A UNC80 Missense_Mutation p.S2414R 0.10 possibly_damaging(0.876) TCGA-CC-A3M9-01 3 121179064 121179064 C A POLQ Missense_Mutation p.A2329S 0.16 deleterious(0) probably_damaging(1) TCGA-CC-A3M9-01 3 127413989 127413989 C T MGLL Silent p.L215L 0.22 TCGA-CC-A3M9-01 3 13383318 13383318 T A NUP210 Missense_Mutation p.Q1053L 0.28 deleterious(0) benign(0.053) TCGA-CC-A3M9-01 3 167277892 167277892 T A WDR49 Missense_Mutation p.E204V 0.28 deleterious(0.01) possibly_damaging(0.719) TCGA-CC-A3M9-01 3 38645542 38645542 C T SCN5A Silent p.R517R 0.16 TCGA-CC-A3M9-01 3 38991632 38991632 T A SCN11A Silent p.I74I 0.17 TCGA-CC-A3M9-01 3 45823619 45823619 C T SLC6A20 Missense_Mutation p.S73N 0.28 deleterious(0.01) probably_damaging(1) TCGA-CC-A3M9-01 3 57431862 57431862 A C DNAH12 Missense_Mutation p.F1336V 0.24 deleterious(0.01) possibly_damaging(0.637) TCGA-CC-A3M9-01 4 100808468 100808468 C A LAMTOR3 Missense_Mutation p.V30L 0.28 deleterious(0.01) benign(0.01) TCGA-CC-A3M9-01 4 146575235 146575235 A G MMAA Silent p.Q303Q 0.05 TCGA-CC-A3M9-01 4 55946222 55946222 G T KDR Nonsense_Mutation p.Y1319* 0.33 TCGA-CC-A3M9-01 4 68511719 68511722 ATCA - UBA6 Frame_Shift_Del p.Y443* 0.21 TCGA-CC-A3M9-01 4 83278019 83278020 - C HNRNPD Frame_Shift_Ins p.Q262Tfs*11 0.13 TCGA-CC-A3M9-01 5 111600669 111600669 C A EPB41L4A Missense_Mutation p.V160L 0.13 deleterious(0) benign(0.117) TCGA-CC-A3M9-01 5 112899131 112899131 T C YTHDC2 Missense_Mutation p.M795T 0.13 tolerated(0.3) benign(0.001) TCGA-CC-A3M9-01 5 125821443 125821443 A G GRAMD3 Missense_Mutation p.I361V 0.14 tolerated(0.24) benign(0.011) TCGA-CC-A3M9-01 5 132400692 132400692 C T HSPA4 Missense_Mutation p.P43L 0.15 tolerated(0.22) benign(0.02) TCGA-CC-A3M9-01 5 140798233 140798233 G A PCDHGB7 Silent p.Q269Q 0.11 TCGA-CC-A3M9-01 5 142435642 142435642 A T ARHGAP26 Nonsense_Mutation p.K475* 0.16 TCGA-CC-A3M9-01 5 179674507 179674507 T G MAPK9 Missense_Mutation p.D207A 0.10 deleterious(0) probably_damaging(0.996) TCGA-CC-A3M9-01 5 306821 306821 G C PDCD6 Missense_Mutation p.D105H 0.14 deleterious(0) probably_damaging(0.999) TCGA-CC-A3M9-01 5 464493 464493 A G EXOC3 Missense_Mutation p.N581S 0.09 tolerated(0.23) benign(0.002) TCGA-CC-A3M9-01 5 71491475 71491475 T C MAP1B Missense_Mutation p.S765P 0.14 unknown(0) TCGA-CC-A3M9-01 6 136562631 136562631 C G MTFR2 Missense_Mutation p.Q155H 0.07 deleterious(0) probably_damaging(1) TCGA-CC-A3M9-01 6 34029743 34029743 T A GRM4 Nonsense_Mutation p.K267* 0.33 TCGA-CC-A3M9-01 6 97587183 97587183 G A KLHL32 3'UTR 0.17 TCGA-CC-A3M9-01 7 102113247 102113247 C T LRWD1 Missense_Mutation p.T600I 0.04 deleterious(0) benign(0.046) TCGA-CC-A3M9-01 7 117243675 117243675 T A CFTR Missense_Mutation p.F916Y 0.10 deleterious(0.01) benign(0.032) TCGA-CC-A3M9-01 7 117432446 117432446 T G CTTNBP2 Missense_Mutation p.Q268H 0.14 deleterious(0) probably_damaging(0.957) TCGA-CC-A3M9-01 7 117432538 117432538 G A CTTNBP2 Missense_Mutation p.R238W 0.12 deleterious(0) probably_damaging(0.999) TCGA-CC-A3M9-01 7 135377154 135377154 A G SLC13A4 Silent p.T379T 0.21 TCGA-CC-A3M9-01 7 138239638 138239638 G A TRIM24 Missense_Mutation p.R486Q 0.08 tolerated(0.69) possibly_damaging(0.637) TCGA-CC-A3M9-01 7 139791731 139791731 C T KDM7A Silent p.A868A 0.05 TCGA-CC-A3M9-01 7 150708074 150708074 G C NOS3 Missense_Mutation p.G995A 0.21 tolerated(0.28) benign(0.107) TCGA-CC-A3M9-01 7 151970873 151970873 C A KMT2C Missense_Mutation p.C310F 0.04 probably_damaging(0.999) TCGA-CC-A3M9-01 7 1529320 1529320 T A INTS1 Splice_Site p.X722_splice 0.14 TCGA-CC-A3M9-01 7 31104532 31104532 G T ADCYAP1R1 Missense_Mutation p.G46V 0.09 tolerated(0.07) possibly_damaging(0.756) TCGA-CC-A3M9-01 7 76071250 76071250 C T ZP3 Silent p.D384D 0.11 TCGA-CC-A3M9-01 7 94057038 94057038 C A COL1A2 Missense_Mutation p.R1123S 0.29 unknown(0) TCGA-CC-A3M9-01 7 97822981 97822981 T C LMTK2 Silent p.P1068P 0.07 TCGA-CC-A3M9-01 7 99490170 99490171 - T TRIM4 Frame_Shift_Ins p.N373Kfs*13 0.14 TCGA-CC-A3M9-01 8 124266621 124266621 T C ZHX1 Silent p.S522S 0.35 TCGA-CC-A3M9-01 8 2799992 2799992 A C CSMD1 Splice_Site p.X3512_splice 0.56 TCGA-CC-A3M9-01 8 3443701 3443701 T C CSMD1 Silent p.T393T 0.28 TCGA-CC-A3M9-01 8 42587427 42587427 C T CHRNB3 Missense_Mutation p.S326F 0.39 deleterious(0.01) probably_damaging(0.947) TCGA-CC-A3M9-01 8 59060401 59060401 G A FAM110B 3'UTR 0.25 TCGA-CC-A3M9-01 8 68184028 68184028 A G ARFGEF1 Missense_Mutation p.V494A 0.04 deleterious(0.03) benign(0.344) TCGA-CC-A3M9-01 8 75932132 75932132 A G CRISPLD1 Silent p.T385T 0.32 TCGA-CC-A3M9-01 8 82357106 82357106 G C PMP2 Silent p.S64S 0.10 TCGA-CC-A3M9-01 8 87165053 87165053 G T ATP6V0D2 Missense_Mutation p.M300I 0.33 tolerated(0.17) benign(0.012) TCGA-CC-A3M9-01 8 87755800 87755800 T A CNGB3 Missense_Mutation p.E19V 0.43 deleterious(0) benign(0.026) TCGA-CC-A3M9-01 9 124535287 124535287 C G DAB2IP Missense_Mutation p.S799C 0.26 deleterious(0.02) probably_damaging(0.975) TCGA-CC-A3M9-01 9 33796749 33796749 G A PRSS3 Missense_Mutation p.G107D 0.13 deleterious(0) probably_damaging(0.996) TCGA-CC-A3M9-01 9 5549465 5549465 C A PDCD1LG2 Silent p.T164T 0.31 TCGA-CC-A3M9-01 X 135314089 135314089 C G MAP7D3 Missense_Mutation p.V343L 0.56 tolerated(0.35) benign(0.019) TCGA-CC-A3M9-01 X 141291370 141291370 G A MAGEC2 Missense_Mutation p.S135F 0.45 tolerated(0.3) benign(0.022) TCGA-CC-A3M9-01 X 148693147 148693147 C A TMEM185A Splice_Site p.X13_splice 0.58 TCGA-CC-A3M9-01 X 152835147 152835147 C T ATP2B3 Intron 0.21 TCGA-CC-A3M9-01 X 89177229 89177229 C A TGIF2LX Missense_Mutation p.H49N 0.46 tolerated(0.59) benign(0.033) TCGA-CC-A3M9-01 X 99551540 99551540 G T PCDH19 Missense_Mutation p.A1061E 0.49 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-CC-A3M9-01 Y 4966401 4966401 G C PCDH11Y Missense_Mutation p.R261T 0.12 deleterious(0) possibly_damaging(0.627) TCGA-CC-A3MA-01 10 5691033 5691033 G A ASB13 Silent p.V139V 0.59 TCGA-CC-A3MA-01 10 76790247 76790247 A G KAT6B Missense_Mutation p.M1889V 0.34 probably_damaging(0.91) TCGA-CC-A3MA-01 11 71819858 71819858 C A LRTOMT Missense_Mutation p.Q255K 0.36 tolerated(0.24) probably_damaging(0.981) TCGA-CC-A3MA-01 11 822492 822492 T C PNPLA2 Silent p.C194C 0.64 TCGA-CC-A3MA-01 12 120241020 120241020 C G CIT Missense_Mutation p.G429R 0.67 tolerated(0.08) benign(0.072) TCGA-CC-A3MA-01 12 124824953 124824953 G A NCOR2 Missense_Mutation p.S1792F 0.07 probably_damaging(0.974) TCGA-CC-A3MA-01 12 46246364 46246376 TCCCGACTCAGGA - ARID2 Frame_Shift_Del p.P1487Qfs*25 0.33 TCGA-CC-A3MA-01 13 113803258 113803258 C T F10 Silent p.G298G 0.06 TCGA-CC-A3MA-01 13 99038053 99038053 A T FARP1 Silent p.G248G 0.47 TCGA-CC-A3MA-01 14 24884365 24884365 C T NYNRIN Missense_Mutation p.A1137V 0.79 deleterious(0) possibly_damaging(0.772) TCGA-CC-A3MA-01 14 55408242 55408242 T C WDHD1 Missense_Mutation p.Q1119R 0.62 tolerated(0.28) benign(0.25) TCGA-CC-A3MA-01 14 94942653 94942653 G A SERPINA9 5'Flank 0.78 TCGA-CC-A3MA-01 16 89341222 89341227 CTGGCT - ANKRD11 In_Frame_Del p.S2570_Q2571del 0.33 TCGA-CC-A3MA-01 17 18082258 18082258 C T MYO15A 3'UTR 0.41 TCGA-CC-A3MA-01 17 18638692 18638692 G T TRIM16L Missense_Mutation p.K322N 0.42 tolerated(0.05) probably_damaging(1) TCGA-CC-A3MA-01 17 25630657 25630657 T A WSB1 Nonsense_Mutation p.Y158* 0.37 TCGA-CC-A3MA-01 17 27278059 27278059 C A PHF12 5'UTR 0.39 TCGA-CC-A3MA-01 17 40343211 40343211 G C GHDC Missense_Mutation p.L303V 0.45 deleterious(0) probably_damaging(0.98) TCGA-CC-A3MA-01 17 74169787 74169787 C T RNF157 Missense_Mutation p.V98I 0.47 tolerated(0.07) benign(0.34) TCGA-CC-A3MA-01 17 7579349 7579349 A C TP53 Missense_Mutation p.F113C 0.60 deleterious(0) probably_damaging(1) TCGA-CC-A3MA-01 17 79414423 79414423 T A RP11-1055B8.7 Missense_Mutation p.H1175Q 0.27 benign(0.012) TCGA-CC-A3MA-01 18 60795978 60795978 T C BCL2 Silent p.E200E 0.35 TCGA-CC-A3MA-01 19 34303563 34303563 G A KCTD15 Intron 0.42 TCGA-CC-A3MA-01 19 37211090 37211090 G T ZNF567 Missense_Mutation p.M457I 0.28 tolerated(0.36) probably_damaging(0.943) TCGA-CC-A3MA-01 19 44103100 44103100 G A ZNF576 Missense_Mutation p.G68E 0.46 deleterious(0.02) probably_damaging(0.911) TCGA-CC-A3MA-01 19 49357343 49357343 G A PLEKHA4 Missense_Mutation p.T366M 0.50 deleterious(0) possibly_damaging(0.901) TCGA-CC-A3MA-01 19 52216668 52216668 G A HAS1 3'UTR 0.41 TCGA-CC-A3MA-01 19 55816894 55816894 C T BRSK1 Silent p.L610L 0.32 TCGA-CC-A3MA-01 19 9020072 9020072 G A MUC16 Missense_Mutation p.R12475W 0.36 probably_damaging(0.923) TCGA-CC-A3MA-01 1 109477253 109477253 C T CLCC1 3'UTR 0.41 TCGA-CC-A3MA-01 1 120458918 120458919 - AA NOTCH2 Frame_Shift_Ins p.E2143Lfs*5 0.19 TCGA-CC-A3MA-01 1 161989875 161989875 C A OLFML2B Missense_Mutation p.R91M 0.23 deleterious(0) probably_damaging(0.968) TCGA-CC-A3MA-01 1 19186095 19186095 C G TAS1R2 Missense_Mutation p.E20D 0.66 tolerated(0.06) benign(0.276) TCGA-CC-A3MA-01 1 204401382 204401382 G C PIK3C2B Missense_Mutation p.I1367M 0.22 deleterious(0) possibly_damaging(0.724) TCGA-CC-A3MA-01 1 46976674 46976674 A G DMBX1 Missense_Mutation p.Q134R 0.36 tolerated(0.15) probably_damaging(0.995) TCGA-CC-A3MA-01 20 19698204 19698204 C T SLC24A3 Silent p.S584S 0.42 TCGA-CC-A3MA-01 20 33874568 33874568 G A FAM83C Missense_Mutation p.R672W 0.30 tolerated_low_confidence(0.09) benign(0.064) TCGA-CC-A3MA-01 21 15746539 15746539 T C HSPA13 Missense_Mutation p.Y272C 0.29 deleterious(0.03) possibly_damaging(0.863) TCGA-CC-A3MA-01 21 47841881 47841881 T G PCNT Intron 0.37 TCGA-CC-A3MA-01 22 37902375 37902375 C A CARD10 Missense_Mutation p.D403Y 0.31 deleterious(0) probably_damaging(0.987) TCGA-CC-A3MA-01 2 141092035 141092035 T C LRP1B Silent p.L4070L 0.37 TCGA-CC-A3MA-01 2 227922184 227922184 G A COL4A4 Missense_Mutation p.P839L 0.32 unknown(0) TCGA-CC-A3MA-01 2 241534647 241534647 G T CAPN10 Missense_Mutation p.D402Y 0.24 tolerated(0.25) benign(0.285) TCGA-CC-A3MA-01 2 56145028 56145028 C T EFEMP1 Missense_Mutation p.A97T 0.40 tolerated(0.46) benign(0) TCGA-CC-A3MA-01 2 87069268 87069268 G T CD8B Intron 0.32 TCGA-CC-A3MA-01 3 50375613 50375613 C T RASSF1 Intron 0.75 TCGA-CC-A3MA-01 3 93611837 93611837 A G PROS1 Silent p.N365N 0.41 TCGA-CC-A3MA-01 4 62936570 62936570 G A LPHN3 Missense_Mutation p.G1452R 0.39 deleterious_low_confidence(0.02) possibly_damaging(0.756) TCGA-CC-A3MA-01 5 109940828 109940828 A G TMEM232 Missense_Mutation p.S420P 0.05 deleterious(0) probably_damaging(0.948) TCGA-CC-A3MA-01 5 136963985 136963985 C A KLHL3 Splice_Site p.X531_splice 0.42 TCGA-CC-A3MA-01 5 140574925 140574925 G A PCDHB10 3'UTR 0.36 TCGA-CC-A3MA-01 5 167689611 167689611 C G TENM2 Silent p.A2707A 0.40 TCGA-CC-A3MA-01 5 86665656 86665668 AGCACTTTAGTGA - RASA1 Frame_Shift_Del p.H547Nfs*19 0.17 TCGA-CC-A3MA-01 6 105244550 105244550 C T HACE1 Missense_Mutation p.E266K 0.51 tolerated(0.23) benign(0.016) TCGA-CC-A3MA-01 6 7580098 7580098 C G DSP Silent p.S1225S 0.41 TCGA-CC-A3MA-01 7 100334504 100334504 T A ZAN Missense_Mutation p.L109Q 0.44 probably_damaging(0.975) TCGA-CC-A3MA-01 7 149129992 149129992 G A ZNF777 Silent p.D457D 0.44 TCGA-CC-A3MA-01 8 94937986 94937986 C T PDP1 3'UTR 0.26 TCGA-CC-A3MA-01 8 98943556 98943556 C G MATN2 Missense_Mutation p.P173R 0.20 deleterious(0) probably_damaging(1) TCGA-CC-A3MA-01 9 1055892 1055892 G A DMRT2 Intron 0.25 TCGA-CC-A3MA-01 9 109734481 109734481 G A ZNF462 Missense_Mutation p.R2208H 0.37 probably_damaging(0.996) TCGA-CC-A3MA-01 9 39118188 39118188 G A CNTNAP3 Missense_Mutation p.P717S 0.25 deleterious(0.01) benign(0.244) TCGA-CC-A3MA-01 X 101909698 101909698 G T GPRASP1 Missense_Mutation p.R286M 0.82 deleterious(0) possibly_damaging(0.87) TCGA-CC-A3MA-01 X 144905987 144905987 G A SLITRK2 Missense_Mutation p.G682S 0.85 tolerated(0.2) benign(0.256) TCGA-CC-A3MA-01 X 47919903 47919903 T C ZNF630 Missense_Mutation p.D55G 0.76 tolerated(0.12) benign(0.001) TCGA-CC-A3MB-01 10 71025391 71025391 T C HKDC1 Missense_Mutation p.L808P 0.26 deleterious(0) probably_damaging(1) TCGA-CC-A3MB-01 10 78669796 78669796 T C KCNMA1 Silent p.E1008E 0.09 TCGA-CC-A3MB-01 10 88421086 88421087 CG T OPN4 Frame_Shift_Del p.A350Pfs*55 0.32 TCGA-CC-A3MB-01 11 108138031 108138031 G C ATM Missense_Mutation p.S867T 0.47 tolerated(0.09) benign(0.002) TCGA-CC-A3MB-01 11 60184403 60184403 G A MS4A14 Nonsense_Mutation p.W687* 0.19 TCGA-CC-A3MB-01 11 60701185 60701185 C T TMEM132A Missense_Mutation p.R511C 0.52 deleterious(0) probably_damaging(0.996) TCGA-CC-A3MB-01 11 64534515 64534515 G A SF1 Missense_Mutation p.P605L 0.19 tolerated_low_confidence(0.23) unknown(0) TCGA-CC-A3MB-01 11 66472881 66472881 G C SPTBN2 Missense_Mutation p.S622R 0.63 tolerated(0.17) benign(0.004) TCGA-CC-A3MB-01 12 55614885 55614885 C A OR10A7 Missense_Mutation p.S26Y 0.46 tolerated(0.12) benign(0.032) TCGA-CC-A3MB-01 12 70724192 70724192 C A CNOT2 Missense_Mutation p.P171Q 0.54 deleterious(0) probably_damaging(0.946) TCGA-CC-A3MB-01 13 35758164 35758164 C A NBEA Missense_Mutation p.A1628D 0.57 tolerated_low_confidence(0.17) benign(0.007) TCGA-CC-A3MB-01 13 42830522 42830522 G A FHP1 RNA 0.08 TCGA-CC-A3MB-01 14 64989571 64989571 G T ZBTB1 Missense_Mutation p.C450F 0.73 deleterious(0.01) possibly_damaging(0.593) TCGA-CC-A3MB-01 14 72205030 72205030 A G SIPA1L1 Silent p.E1753E 0.17 TCGA-CC-A3MB-01 14 91770230 91770230 G A CCDC88C Silent p.N1150N 0.06 TCGA-CC-A3MB-01 14 92790275 92790275 G A SLC24A4 Missense_Mutation p.C34Y 0.17 tolerated_low_confidence(0.16) benign(0.001) TCGA-CC-A3MB-01 15 42245961 42245961 C A EHD4 Splice_Site p.X138_splice 0.56 TCGA-CC-A3MB-01 15 59801108 59801108 G A FAM81A Missense_Mutation p.S197N 0.27 tolerated(0.64) benign(0.158) TCGA-CC-A3MB-01 15 93489406 93489406 G C CHD2 Missense_Mutation p.S446T 0.37 tolerated(0.27) benign(0.013) TCGA-CC-A3MB-01 15 93489423 93489423 A G CHD2 Missense_Mutation p.T452A 0.39 tolerated(0.17) benign(0.228) TCGA-CC-A3MB-01 16 57494669 57494669 C T COQ9 3'UTR 0.33 TCGA-CC-A3MB-01 16 75204019 75204019 A G ZFP1 Silent p.S337S 0.20 TCGA-CC-A3MB-01 17 44953863 44953863 G T WNT9B Nonsense_Mutation p.E285* 0.56 TCGA-CC-A3MB-01 17 47874270 47874270 G T KAT7 Missense_Mutation p.V108F 0.83 tolerated_low_confidence(0.29) benign(0.048) TCGA-CC-A3MB-01 17 56388536 56388536 C A BZRAP1 Silent p.L1040L 0.74 TCGA-CC-A3MB-01 17 7577534 7577534 C A TP53 Missense_Mutation p.R249S 0.74 deleterious(0) probably_damaging(0.994) TCGA-CC-A3MB-01 17 76503588 76503588 C G DNAH17 Missense_Mutation p.Q1508H 0.19 possibly_damaging(0.776) TCGA-CC-A3MB-01 18 28923773 28923773 A G DSG1 Intron 0.45 TCGA-CC-A3MB-01 19 10671691 10671691 G C KRI1 Silent p.S223S 0.23 TCGA-CC-A3MB-01 19 22155053 22155053 C A ZNF208 Missense_Mutation p.W928L 0.19 tolerated(0.45) unknown(0) TCGA-CC-A3MB-01 19 35622722 35622722 C T LGI4 Silent p.L143L 0.52 TCGA-CC-A3MB-01 19 38383676 38383676 C G WDR87 Missense_Mutation p.M850I 0.05 benign(0.016) TCGA-CC-A3MB-01 19 46915065 46915065 G C CCDC8 Missense_Mutation p.Q335E 0.13 benign(0.04) TCGA-CC-A3MB-01 19 47207810 47207810 C G PRKD2 Missense_Mutation p.S203T 0.24 tolerated(0.58) benign(0.03) TCGA-CC-A3MB-01 19 47844736 47844736 C A C5AR2 Missense_Mutation p.A227E 0.42 tolerated(0.13) benign(0.037) TCGA-CC-A3MB-01 19 50436359 50436359 G T ATF5 3'UTR 0.21 TCGA-CC-A3MB-01 19 57954874 57954874 C A ZNF749 Missense_Mutation p.L120M 0.05 tolerated(0.16) possibly_damaging(0.86) TCGA-CC-A3MB-01 1 108292166 108292166 T A VAV3 Missense_Mutation p.D437V 0.06 deleterious(0.02) probably_damaging(0.996) TCGA-CC-A3MB-01 1 12403094 12403094 A G VPS13D Silent p.G2957G 0.05 TCGA-CC-A3MB-01 1 147230516 147230516 T C GJA5 Silent p.G277G 0.28 TCGA-CC-A3MB-01 1 150933423 150933423 C G SETDB1 Nonsense_Mutation p.S962* 0.07 TCGA-CC-A3MB-01 1 156108485 156108485 C T LMNA Silent p.G635G 0.21 TCGA-CC-A3MB-01 1 158151417 158151417 C G CD1D Missense_Mutation p.D78E 0.09 tolerated(0.2) benign(0.004) TCGA-CC-A3MB-01 1 171236701 171236701 G A FMO1 Missense_Mutation p.R51K 0.24 tolerated(0.06) probably_damaging(0.91) TCGA-CC-A3MB-01 1 177247856 177247856 A T BRINP2 Silent p.L390L 0.42 TCGA-CC-A3MB-01 1 19511693 19511693 G T UBR4 Missense_Mutation p.P613Q 0.07 benign(0.259) TCGA-CC-A3MB-01 1 207679429 207679429 G A CR1 Splice_Site p.X101_splice 0.25 TCGA-CC-A3MB-01 1 216373462 216373462 A G USH2A Silent p.S1106S 0.60 TCGA-CC-A3MB-01 1 226030103 226030103 C A EPHX1 Missense_Mutation p.A323D 0.47 deleterious(0.01) possibly_damaging(0.658) TCGA-CC-A3MB-01 1 240072218 240072218 G A CHRM3 Silent p.A489A 0.24 TCGA-CC-A3MB-01 1 26139198 26139198 T A SEPN1 Silent p.T434T 0.73 TCGA-CC-A3MB-01 1 39751339 39751339 C A MACF1 Missense_Mutation p.Q478K 0.79 possibly_damaging(0.578) TCGA-CC-A3MB-01 1 75199081 75199081 C T TYW3 Silent p.G51G 0.10 TCGA-CC-A3MB-01 1 91978829 91978829 G T CDC7 Missense_Mutation p.A263S 0.17 tolerated(0.82) benign(0.002) TCGA-CC-A3MB-01 20 3102976 3102976 G A UBOX5 Silent p.G103G 0.46 TCGA-CC-A3MB-01 20 49214133 49214133 C A FAM65C Missense_Mutation p.G588C 0.15 deleterious(0) probably_damaging(0.94) TCGA-CC-A3MB-01 22 50483805 50483805 G T TTLL8 Silent p.R210R 0.04 TCGA-CC-A3MB-01 2 116593811 116593811 A C DPP10 Missense_Mutation p.I681L 0.15 deleterious(0.03) benign(0.176) TCGA-CC-A3MB-01 2 125192079 125192079 T G CNTNAP5 Missense_Mutation p.F183C 0.47 deleterious(0) probably_damaging(0.928) TCGA-CC-A3MB-01 2 158991495 158991495 G A UPP2 3'UTR 0.15 TCGA-CC-A3MB-01 2 179648880 179648880 C T TTN Missense_Mutation p.V898M 0.05 TCGA-CC-A3MB-01 2 60687558 60687558 T G BCL11A Missense_Mutation p.N830T 0.61 tolerated(0.16) benign(0.403) TCGA-CC-A3MB-01 2 61571021 61571021 G T USP34 Missense_Mutation p.A810E 0.65 tolerated(0.12) benign(0.024) TCGA-CC-A3MB-01 2 9533657 9533657 C A ASAP2 Missense_Mutation p.S855R 0.15 tolerated(0.37) benign(0.111) TCGA-CC-A3MB-01 3 126229602 126229602 C T UROC1 Silent p.P54P 0.20 TCGA-CC-A3MB-01 3 129547259 129547259 A T TMCC1 5'UTR 0.31 TCGA-CC-A3MB-01 3 130098302 130098302 C A COL6A5 Missense_Mutation p.L237I 0.45 tolerated(0.56) benign(0.1) TCGA-CC-A3MB-01 3 152554903 152554903 G T P2RY1 3'UTR 0.10 TCGA-CC-A3MB-01 3 183655819 183655819 G A ABCC5 Missense_Mutation p.R1242C 0.22 deleterious(0) probably_damaging(1) TCGA-CC-A3MB-01 3 39226588 39226588 A G XIRP1 Missense_Mutation p.M1450T 0.28 tolerated(0.19) benign(0) TCGA-CC-A3MB-01 3 42234621 42234660 AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT - TRAK1 Frame_Shift_Del p.E275Dfs*4 0.15 TCGA-CC-A3MB-01 3 45153758 45153758 C G CDCP1 Missense_Mutation p.G158R 0.47 tolerated(0.86) probably_damaging(0.927) TCGA-CC-A3MB-01 3 50306625 50306625 T C SEMA3B-AS1 5'Flank 0.29 TCGA-CC-A3MB-01 3 52962211 52962211 A C SFMBT1 Silent p.P348P 0.40 TCGA-CC-A3MB-01 4 141484605 141484605 C T UCP1 Silent p.G131G 0.43 TCGA-CC-A3MB-01 4 37447599 37447599 T A KIAA1239 Missense_Mutation p.I1330N 0.04 tolerated(0.31) benign(0.067) TCGA-CC-A3MB-01 4 6377634 6377634 A T PPP2R2C Missense_Mutation p.I120N 0.47 deleterious(0) probably_damaging(0.987) TCGA-CC-A3MB-01 4 79204044 79204044 A G FRAS1 Missense_Mutation p.E393G 0.06 benign(0.027) TCGA-CC-A3MB-01 4 88052964 88052964 T A AFF1 Missense_Mutation p.S1041T 0.19 tolerated(0.53) unknown(0) TCGA-CC-A3MB-01 5 101755554 101755554 G A SLCO6A1 Missense_Mutation p.A483V 0.07 deleterious(0) probably_damaging(0.998) TCGA-CC-A3MB-01 5 141059772 141059772 G A ARAP3 Silent p.P94P 0.48 TCGA-CC-A3MB-01 5 150945475 150945475 C A FAT2 Missense_Mutation p.R1006S 0.04 benign(0.102) TCGA-CC-A3MB-01 5 155935693 155935693 A T SGCD Missense_Mutation p.K92I 0.50 deleterious(0.01) probably_damaging(0.931) TCGA-CC-A3MB-01 5 156755023 156755023 C G CYFIP2 Missense_Mutation p.Q682E 0.20 tolerated(0.09) possibly_damaging(0.542) TCGA-CC-A3MB-01 5 162911119 162911119 T G HMMR Missense_Mutation p.N610K 0.06 deleterious(0) possibly_damaging(0.628) TCGA-CC-A3MB-01 5 26906841 26906841 C A CDH9 Silent p.V210V 0.28 TCGA-CC-A3MB-01 5 38958582 38958582 A T RICTOR Missense_Mutation p.S795T 0.42 tolerated(1) benign(0.034) TCGA-CC-A3MB-01 6 121768871 121768871 G A GJA1 Missense_Mutation p.R293K 0.11 tolerated(0.83) benign(0.015) TCGA-CC-A3MB-01 6 150001056 150001058 AGA - LATS1 In_Frame_Del p.L849_C850delinsR 0.81 TCGA-CC-A3MB-01 6 31610072 31610072 G A BAG6 Missense_Mutation p.P688S 0.07 tolerated(0.29) benign(0.1) TCGA-CC-A3MB-01 7 104746372 104746372 C T KMT2E Nonsense_Mutation p.Q840* 0.16 TCGA-CC-A3MB-01 7 135613431 135613431 T C MTPN 3'UTR 0.17 TCGA-CC-A3MB-01 7 47849144 47849144 A G PKD1L1 Missense_Mutation p.L2538P 0.10 deleterious(0) probably_damaging(0.99) TCGA-CC-A3MB-01 7 6851599 6851599 T A CCZ1B Missense_Mutation p.H313L 0.19 tolerated(0.17) benign(0.005) TCGA-CC-A3MB-01 7 8198174 8198174 T C ICA1 Missense_Mutation p.M230V 0.42 tolerated(1) benign(0.002) TCGA-CC-A3MB-01 7 8198175 8198175 G T ICA1 Missense_Mutation p.H229Q 0.41 deleterious(0.02) possibly_damaging(0.823) TCGA-CC-A3MB-01 7 92028083 92028083 T C ANKIB1 Silent p.S1030S 0.39 TCGA-CC-A3MB-01 8 21894228 21894228 G T NPM2 3'UTR 0.37 TCGA-CC-A3MB-01 8 22548280 22548280 G A EGR3 Silent p.D290D 0.28 TCGA-CC-A3MB-01 8 35647893 35647893 G T UNC5D Missense_Mutation p.A892S 0.39 deleterious(0) probably_damaging(0.957) TCGA-CC-A3MB-01 9 101748062 101748062 G A COL15A1 Missense_Mutation p.V106M 0.81 tolerated(0.12) benign(0.021) TCGA-CC-A3MB-01 9 115652239 115652239 G A SLC46A2 Silent p.P241P 0.73 TCGA-CC-A3MB-01 9 140063547 140063547 T C LRRC26 Missense_Mutation p.Q255R 0.22 tolerated(0.43) benign(0.003) TCGA-CC-A3MB-01 9 35555100 35555100 A G RUSC2 Silent p.E686E 0.07 TCGA-CC-A3MB-01 9 77614715 77614715 A G C9orf41 Missense_Mutation p.L221P 0.17 tolerated(0.13) probably_damaging(0.934) TCGA-CC-A3MB-01 X 110439078 110439078 A T PAK3 Missense_Mutation p.Q409H 0.86 tolerated(0.08) probably_damaging(0.912) TCGA-CC-A3MB-01 X 23411906 23411906 A T PTCHD1 Missense_Mutation p.L757F 0.87 deleterious(0.01) probably_damaging(0.998) TCGA-CC-A3MB-01 X 71360819 71360819 G A NHSL2 Intron 0.46 TCGA-CC-A3MC-01 10 101825001 101825001 G A CPN1 Nonsense_Mutation p.R235* 0.25 TCGA-CC-A3MC-01 10 102250534 102250534 T C SEC31B Missense_Mutation p.N860S 0.20 tolerated(0.46) benign(0.006) TCGA-CC-A3MC-01 10 114910795 114910795 A T TCF7L2 Missense_Mutation p.H305L 0.22 deleterious(0) probably_damaging(0.998) TCGA-CC-A3MC-01 10 17730065 17730065 G A STAM Missense_Mutation p.V113I 0.40 deleterious(0.05) benign(0.283) TCGA-CC-A3MC-01 10 29818698 29818698 G A SVIL Missense_Mutation p.R728C 0.19 deleterious(0) probably_damaging(1) TCGA-CC-A3MC-01 10 81272951 81272951 G T EIF5AL1 3'UTR 0.22 TCGA-CC-A3MC-01 10 81316141 81316141 A C SFTPA2 3'UTR 0.16 TCGA-CC-A3MC-01 11 121036027 121036027 G T TECTA Missense_Mutation p.R1773L 0.18 tolerated(0.24) benign(0.115) TCGA-CC-A3MC-01 11 123909699 123909699 C T OR10G7 Missense_Mutation p.A4T 0.38 tolerated(0.41) benign(0.001) TCGA-CC-A3MC-01 11 44096174 44096174 A C ACCS Missense_Mutation p.E144D 0.27 deleterious(0.02) probably_damaging(0.996) TCGA-CC-A3MC-01 11 66568539 66568539 A G C11orf80 Missense_Mutation p.I271V 0.18 tolerated(0.09) benign(0.274) TCGA-CC-A3MC-01 11 71932083 71932083 T A FOLR2 Missense_Mutation p.L107Q 0.38 deleterious(0) probably_damaging(0.992) TCGA-CC-A3MC-01 11 71944787 71944787 A G INPPL1 Silent p.K737K 0.25 TCGA-CC-A3MC-01 11 89133229 89133229 G C NOX4 Missense_Mutation p.P344A 0.11 deleterious(0) probably_damaging(0.967) TCGA-CC-A3MC-01 12 105519876 105519876 C G KIAA1033 Nonsense_Mutation p.S294* 0.33 TCGA-CC-A3MC-01 12 123311026 123311026 C G CCDC62 3'UTR 0.28 TCGA-CC-A3MC-01 12 124383209 124383209 A G DNAH10 Missense_Mutation p.K3045R 0.09 benign(0.02) TCGA-CC-A3MC-01 12 57113603 57113603 G T NACA Missense_Mutation p.P571T 0.09 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-CC-A3MC-01 12 63977820 63977820 C A DPY19L2 Intron 0.36 TCGA-CC-A3MC-01 13 113960890 113960890 C T LAMP1 Missense_Mutation p.S51L 0.58 tolerated(0.75) benign(0.005) TCGA-CC-A3MC-01 14 76548963 76548963 C A IFT43 Silent p.I129I 0.12 TCGA-CC-A3MC-01 14 81251620 81251620 A C CEP128 Silent p.A610A 0.11 TCGA-CC-A3MC-01 15 101112222 101112222 T A LINS Missense_Mutation p.H424L 0.23 deleterious(0) probably_damaging(0.923) TCGA-CC-A3MC-01 15 33936690 33936690 C A RYR3 Silent p.V1245V 0.41 TCGA-CC-A3MC-01 15 40660976 40660976 A T DISP2 Missense_Mutation p.Q888L 0.29 tolerated(0.72) benign(0.001) TCGA-CC-A3MC-01 15 43815176 43815176 C T MAP1A Missense_Mutation p.P502L 0.32 possibly_damaging(0.736) TCGA-CC-A3MC-01 15 45694355 45694355 G T SPATA5L1 5'Flank 0.36 TCGA-CC-A3MC-01 15 57953696 57953696 C G GCOM1 Missense_Mutation p.Q390E 0.23 tolerated(0.52) probably_damaging(0.999) TCGA-CC-A3MC-01 15 59502718 59502718 T G MYO1E Missense_Mutation p.K453Q 0.33 deleterious(0.03) probably_damaging(0.996) TCGA-CC-A3MC-01 15 60297165 60297165 G T FOXB1 Translation_Start_Site p.M1? 0.35 deleterious(0) probably_damaging(0.993) TCGA-CC-A3MC-01 15 65443162 65443162 T C CLPX Silent p.%3D 0.29 TCGA-CC-A3MC-01 15 75641492 75641492 C T NEIL1 Silent p.S82S 0.29 TCGA-CC-A3MC-01 16 2158258 2158258 T C PKD1 Missense_Mutation p.T2304A 0.38 benign(0.403) TCGA-CC-A3MC-01 16 28877683 28877683 C A SH2B1 Missense_Mutation p.P90T 0.07 tolerated(0.33) benign(0.214) TCGA-CC-A3MC-01 16 31121012 31121012 C - BCKDK Frame_Shift_Del p.Q95Sfs*6 0.22 TCGA-CC-A3MC-01 16 77317668 77317668 G A ADAMTS18 3'UTR 0.25 TCGA-CC-A3MC-01 16 81190514 81190514 C T PKD1L2 RNA 0.60 TCGA-CC-A3MC-01 16 86614095 86614095 T A FOXL1 3'UTR 0.57 TCGA-CC-A3MC-01 16 89352532 89352532 C T ANKRD11 Silent p.T269T 0.45 TCGA-CC-A3MC-01 17 13980195 13980195 A G COX10 Silent p.L107L 0.44 TCGA-CC-A3MC-01 17 4701710 4701710 C A PSMB6 Missense_Mutation p.P238H 0.35 deleterious_low_confidence(0) benign(0.284) TCGA-CC-A3MC-01 17 54925299 54925299 A G DGKE Missense_Mutation p.K254R 0.22 tolerated(0.1) benign(0.022) TCGA-CC-A3MC-01 17 57758348 57758348 G C CLTC Missense_Mutation p.D999H 0.31 deleterious(0) probably_damaging(0.952) TCGA-CC-A3MC-01 17 61476233 61476233 C T TANC2 Nonsense_Mutation p.R1023* 0.31 TCGA-CC-A3MC-01 17 7213030 7213030 C T EIF5A Missense_Mutation p.R56C 0.64 deleterious(0.05) benign(0.105) TCGA-CC-A3MC-01 17 72518830 72518830 C G CD300LB 3'UTR 0.36 TCGA-CC-A3MC-01 17 76183502 76183502 G A AFMID Silent p.K17K 0.39 TCGA-CC-A3MC-01 18 2891529 2891529 C T EMILIN2 Silent p.C468C 0.41 TCGA-CC-A3MC-01 18 44555190 44555190 G A TCEB3C Missense_Mutation p.L342F 0.15 deleterious(0) benign(0.12) TCGA-CC-A3MC-01 18 71959015 71959027 GTGGTGCAGGATC - CYB5A Frame_Shift_Del p.I29Rfs*5 0.25 TCGA-CC-A3MC-01 19 14574553 14574553 A C PKN1 Missense_Mutation p.Q504H 0.33 tolerated(0.07) benign(0.028) TCGA-CC-A3MC-01 19 15300099 15300099 C G NOTCH3 Missense_Mutation p.D393H 0.37 deleterious(0) probably_damaging(1) TCGA-CC-A3MC-01 19 22575694 22575694 A T ZNF98 Missense_Mutation p.C115S 0.36 deleterious(0.03) benign(0.032) TCGA-CC-A3MC-01 19 23543172 23543172 G A ZNF91 Missense_Mutation p.T870M 0.38 tolerated(0.11) probably_damaging(0.94) TCGA-CC-A3MC-01 19 38633246 38633246 A G SIPA1L3 Silent p.V1143V 0.26 TCGA-CC-A3MC-01 19 50187272 50187272 C A PRMT1 Nonsense_Mutation p.C167* 0.25 TCGA-CC-A3MC-01 19 50193828 50193828 T - ADM5 3'UTR 0.24 TCGA-CC-A3MC-01 19 5931460 5931460 T C RANBP3 Silent p.A216A 0.50 TCGA-CC-A3MC-01 1 102302451 102302451 C A OLFM3 Missense_Mutation p.R67L 0.27 deleterious(0.01) benign(0.205) TCGA-CC-A3MC-01 1 10659348 10659348 G T PEX14 Missense_Mutation p.D75Y 0.09 deleterious(0) possibly_damaging(0.813) TCGA-CC-A3MC-01 1 107600118 107600118 G T PRMT6 Missense_Mutation p.A261S 0.54 tolerated(0.15) benign(0.002) TCGA-CC-A3MC-01 1 113192075 113192075 A T CAPZA1 Missense_Mutation p.R47W 0.26 deleterious(0) probably_damaging(0.943) TCGA-CC-A3MC-01 1 13669112 13669112 C A PRAMEF14 Missense_Mutation p.K406N 0.05 tolerated(0.41) benign(0.106) TCGA-CC-A3MC-01 1 152484032 152484032 C A LCE5A Missense_Mutation p.Q8K 0.12 tolerated_low_confidence(0.41) unknown(0) TCGA-CC-A3MC-01 1 156035802 156035802 G A RAB25 Silent p.E48E 0.05 TCGA-CC-A3MC-01 1 157095349 157095349 A G ETV3 Missense_Mutation p.S275P 0.39 tolerated(0.47) probably_damaging(0.939) TCGA-CC-A3MC-01 1 16259330 16259330 G T SPEN Missense_Mutation p.A2199S 0.33 benign(0.001) TCGA-CC-A3MC-01 1 207510136 207510136 A C CD55 Missense_Mutation p.T318P 0.50 deleterious(0.01) benign(0.383) TCGA-CC-A3MC-01 1 43240502 43240502 A G C1orf50 Missense_Mutation p.E126G 0.08 deleterious(0.04) benign(0.026) TCGA-CC-A3MC-01 1 45962277 45962277 A G CCDC163P Missense_Mutation p.L94P 0.08 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-CC-A3MC-01 1 63876884 63876884 C A ALG6 Missense_Mutation p.L188I 0.06 tolerated(0.17) possibly_damaging(0.596) TCGA-CC-A3MC-01 1 74649130 74649130 T G LRRIQ3 Missense_Mutation p.H80P 0.24 deleterious(0) probably_damaging(0.995) TCGA-CC-A3MC-01 1 75038452 75038452 G A C1orf173 Missense_Mutation p.A981V 0.34 tolerated(0.08) benign(0.096) TCGA-CC-A3MC-01 1 7797423 7797423 G A CAMTA1 Missense_Mutation p.A1151T 0.41 deleterious(0) possibly_damaging(0.587) TCGA-CC-A3MC-01 1 91406103 91406103 T C ZNF644 Missense_Mutation p.M270V 0.35 tolerated(0.24) benign(0.001) TCGA-CC-A3MC-01 20 33451284 33451284 G C GGT7 Missense_Mutation p.S79R 0.26 deleterious(0.01) benign(0.324) TCGA-CC-A3MC-01 21 46328091 46328091 C A ITGB2 Intron 0.39 TCGA-CC-A3MC-01 22 18374289 18374289 G C MICAL3 Silent p.A552A 0.31 TCGA-CC-A3MC-01 22 30762072 30762072 T A CCDC157 Missense_Mutation p.V28D 0.11 deleterious(0) possibly_damaging(0.561) TCGA-CC-A3MC-01 22 40080564 40080579 AGGCCTGGAAGTCCAA - CACNA1I Intron 0.28 TCGA-CC-A3MC-01 22 40662452 40662452 C T TNRC6B Nonsense_Mutation p.Q740* 0.49 TCGA-CC-A3MC-01 2 113483036 113483036 G A NT5DC4 Missense_Mutation p.D322N 0.50 deleterious(0.02) possibly_damaging(0.561) TCGA-CC-A3MC-01 2 132235947 132235947 C A TUBA3D Missense_Mutation p.P72T 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.712) TCGA-CC-A3MC-01 2 136513213 136513213 C T UBXN4 Missense_Mutation p.L154F 0.37 tolerated(0.74) benign(0.001) TCGA-CC-A3MC-01 2 162227718 162227718 C G PSMD14 Missense_Mutation p.P116R 0.21 deleterious(0) probably_damaging(0.998) TCGA-CC-A3MC-01 2 191840382 191840382 C T STAT1 Intron 0.44 TCGA-CC-A3MC-01 2 210835632 210835632 C A UNC80 Missense_Mutation p.P2670H 0.19 probably_damaging(0.998) TCGA-CC-A3MC-01 2 211471635 211471635 G T CPS1 Missense_Mutation p.R727L 0.42 deleterious(0) possibly_damaging(0.662) TCGA-CC-A3MC-01 2 232458647 232458647 C A C2orf57 Missense_Mutation p.R329S 0.21 deleterious(0.01) benign(0.048) TCGA-CC-A3MC-01 2 233899496 233899496 A T NEU2 Missense_Mutation p.Q291L 0.29 tolerated(0.17) benign(0.002) TCGA-CC-A3MC-01 2 29296015 29296015 C A C2orf71 Missense_Mutation p.W371C 0.41 tolerated(0.31) benign(0.081) TCGA-CC-A3MC-01 2 32463205 32463205 G A NLRC4 Silent p.I839I 0.23 TCGA-CC-A3MC-01 2 32640007 32640007 G T BIRC6 Nonsense_Mutation p.E550* 0.04 TCGA-CC-A3MC-01 2 99449388 99449388 G A KIAA1211L Silent p.D104D 0.15 TCGA-CC-A3MC-01 3 10128833 10128833 C T FANCD2 Silent p.Y1117Y 0.29 TCGA-CC-A3MC-01 3 108156479 108156479 T G MYH15 Missense_Mutation p.E1068A 0.30 deleterious(0.01) benign(0.437) TCGA-CC-A3MC-01 3 119217576 119217576 A G TIMMDC1 5'UTR 0.09 TCGA-CC-A3MC-01 3 132061394 132061394 A C ACPP Splice_Site p.X186_splice 0.24 TCGA-CC-A3MC-01 3 170828631 170828631 T C TNIK Missense_Mutation p.E719G 0.06 tolerated(0.06) possibly_damaging(0.65) TCGA-CC-A3MC-01 3 184070097 184070097 T C CLCN2 Missense_Mutation p.E765G 0.28 tolerated(0.09) benign(0.001) TCGA-CC-A3MC-01 3 45944642 45944642 G T CCR9 3'UTR 0.37 TCGA-CC-A3MC-01 3 52558208 52558208 C T STAB1 Silent p.D2545D 0.28 TCGA-CC-A3MC-01 3 69097137 69097137 T C TMF1 Missense_Mutation p.N240S 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.63) TCGA-CC-A3MC-01 3 79639035 79639036 - A ROBO1 Frame_Shift_Ins p.L9Ffs*24 0.12 TCGA-CC-A3MC-01 3 8574486 8574524 TCGGGCTTCGAGCCACATTCATGGAGGTAACAGATTTTG - LMCD1 Splice_Site p.X36_splice 0.24 TCGA-CC-A3MC-01 4 148407203 148407203 C G EDNRA Missense_Mutation p.L124V 0.07 deleterious(0.03) probably_damaging(0.955) TCGA-CC-A3MC-01 4 54325743 54325743 T C FIP1L1 3'UTR 0.16 TCGA-CC-A3MC-01 4 76857288 76857288 C A NAAA Missense_Mutation p.D158Y 0.14 deleterious(0) probably_damaging(0.934) TCGA-CC-A3MC-01 4 77069540 77069540 G A NUP54 5'UTR 0.33 TCGA-CC-A3MC-01 5 110409217 110409217 C T TSLP Silent p.C75C 0.12 TCGA-CC-A3MC-01 5 112769739 112769739 G T TSSK1B Silent p.I266I 0.22 TCGA-CC-A3MC-01 5 176026296 176026296 C T GPRIN1 Missense_Mutation p.M180I 0.09 tolerated(0.27) benign(0.002) TCGA-CC-A3MC-01 6 111540208 111540208 C T SLC16A10 Silent p.F426F 0.42 TCGA-CC-A3MC-01 6 137323486 137323486 T C IL20RA Missense_Mutation p.I291V 0.28 tolerated(0.12) possibly_damaging(0.472) TCGA-CC-A3MC-01 6 17514129 17514129 G C CAP2 Missense_Mutation p.E194Q 0.32 tolerated(0.07) benign(0.261) TCGA-CC-A3MC-01 6 24847845 24847845 G - FAM65B Frame_Shift_Del p.K385Sfs*22 0.24 TCGA-CC-A3MC-01 6 42195958 42195958 A G TRERF1 3'UTR 0.37 TCGA-CC-A3MC-01 6 43250675 43250675 G T TTBK1 Nonsense_Mutation p.E733* 0.38 TCGA-CC-A3MC-01 6 97053845 97053845 A G FHL5 Silent p.R134R 0.37 TCGA-CC-A3MC-01 7 100275413 100275413 A G GNB2 Missense_Mutation p.I157V 0.26 tolerated(0.05) benign(0.053) TCGA-CC-A3MC-01 7 112724843 112724843 A T GPR85 5'UTR 0.35 TCGA-CC-A3MC-01 7 123197496 123197496 C A NDUFA5 Missense_Mutation p.G10C 0.37 deleterious(0) probably_damaging(0.995) TCGA-CC-A3MC-01 7 124475442 124475442 G A POT1 Missense_Mutation p.L466F 0.18 tolerated(0.05) probably_damaging(0.999) TCGA-CC-A3MC-01 7 131925877 131925877 C A PLXNA4 Nonsense_Mutation p.E518* 0.41 TCGA-CC-A3MC-01 7 141673256 141673256 A G TAS2R38 Silent p.L78L 0.42 TCGA-CC-A3MC-01 7 144096113 144096113 G T NOBOX Missense_Mutation p.P467T 0.28 deleterious(0) probably_damaging(0.922) TCGA-CC-A3MC-01 7 155093275 155093275 G C INSIG1 Splice_Site p.X138_splice 0.31 TCGA-CC-A3MC-01 7 27150183 27150183 T C HOXA3 Missense_Mutation p.Y26C 0.19 deleterious(0) benign(0.429) TCGA-CC-A3MC-01 7 27185389 27185389 C T HOXA6 Missense_Mutation p.R197H 0.07 deleterious(0) probably_damaging(0.991) TCGA-CC-A3MC-01 7 62753070 62753070 C G ZNF733P RNA 0.27 TCGA-CC-A3MC-01 7 73609125 73609125 G T EIF4H Missense_Mutation p.R175L 0.28 tolerated(0.65) benign(0.069) TCGA-CC-A3MC-01 7 77551943 77551943 A G PHTF2 Missense_Mutation p.T289A 0.30 tolerated(0.9) benign(0.001) TCGA-CC-A3MC-01 7 88963648 88963648 G T ZNF804B Missense_Mutation p.G451V 0.30 deleterious(0) probably_damaging(1) TCGA-CC-A3MC-01 8 105361460 105361460 C A DCSTAMP Missense_Mutation p.T227N 0.14 deleterious(0) probably_damaging(0.998) TCGA-CC-A3MC-01 8 142443975 142443975 A G PTP4A3 3'Flank 0.07 TCGA-CC-A3MC-01 8 15621746 15621746 T A TUSC3 3'UTR 0.45 TCGA-CC-A3MC-01 8 77766040 77766041 - A ZFHX4 Frame_Shift_Ins p.R2297Kfs*5 0.33 TCGA-CC-A3MC-01 9 114188030 114188030 A - KIAA0368 Frame_Shift_Del p.C555Vfs*2 0.10 TCGA-CC-A3MC-01 9 136234218 136234218 T A SURF4 Missense_Mutation p.Q51L 0.21 deleterious(0) probably_damaging(1) TCGA-CC-A3MC-01 9 137630606 137630606 T C COL5A1 Silent p.P482P 0.27 TCGA-CC-A3MC-01 9 32784555 32784555 G A TMEM215 Missense_Mutation p.S125N 0.29 tolerated(0.43) benign(0.002) TCGA-CC-A3MC-01 9 95846880 95846880 G A SUSD3 Missense_Mutation p.G207R 0.26 tolerated(0.88) benign(0.001) TCGA-CC-A3MC-01 X 100807839 100807839 C T ARMCX1 5'UTR 0.75 TCGA-CC-A3MC-01 X 153224782 153224782 C A HCFC1 Silent p.T535T 0.61 TCGA-CC-A3MC-01 X 2644348 2644348 G A CD99 Missense_Mutation p.A137T 0.14 tolerated(0.73) possibly_damaging(0.798) TCGA-CC-A5UC-01 10 115987675 115987675 T C TDRD1 Missense_Mutation p.M1137T 0.19 tolerated(0.7) benign(0.014) TCGA-CC-A5UC-01 10 71700763 71700763 G A COL13A1 Missense_Mutation p.G622D 0.26 deleterious(0) probably_damaging(0.998) TCGA-CC-A5UC-01 11 123483491 123483491 C A GRAMD1B Silent p.R505R 0.25 TCGA-CC-A5UC-01 11 1262923 1262923 G A MUC5B Missense_Mutation p.G1605R 0.22 unknown(0) TCGA-CC-A5UC-01 11 67166225 67166225 T C PPP1CA Missense_Mutation p.S295G 0.07 deleterious_low_confidence(0.02) benign(0.294) TCGA-CC-A5UC-01 12 41966919 41966919 C G PDZRN4 Missense_Mutation p.Q780E 0.16 tolerated(1) benign(0.08) TCGA-CC-A5UC-01 12 56478884 56478884 A T ERBB3 Nonsense_Mutation p.K114* 0.11 TCGA-CC-A5UC-01 12 72021636 72021636 T A ZFC3H1 Missense_Mutation p.N1342I 0.14 deleterious(0.01) benign(0.132) TCGA-CC-A5UC-01 14 106691845 106691845 G T IGHV3-21 Missense_Mutation p.P60Q 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.738) TCGA-CC-A5UC-01 14 24737122 24737122 G T RABGGTA Missense_Mutation p.P397H 0.15 deleterious(0) probably_damaging(0.997) TCGA-CC-A5UC-01 14 74753419 74753419 C T ABCD4 Silent p.R579R 0.32 TCGA-CC-A5UC-01 15 31318460 31318460 C T TRPM1 Missense_Mutation p.D1188N 0.12 tolerated(0.07) benign(0.096) TCGA-CC-A5UC-01 15 40062634 40062634 A G FSIP1 Missense_Mutation p.C102R 0.16 tolerated(0.24) benign(0.015) TCGA-CC-A5UC-01 15 42059142 42059142 C A MGA Silent p.L2954L 0.14 TCGA-CC-A5UC-01 16 31926823 31926823 G A ZNF267 Missense_Mutation p.R418H 0.31 tolerated(0.13) possibly_damaging(0.697) TCGA-CC-A5UC-01 16 396352 396353 CT G AXIN1 Frame_Shift_Del p.S225Pfs*17 0.19 TCGA-CC-A5UC-01 16 4033250 4033250 G A ADCY9 Silent p.S834S 0.34 TCGA-CC-A5UC-01 16 89180877 89180877 A G ACSF3 Missense_Mutation p.T370A 0.33 tolerated(0.79) benign(0.001) TCGA-CC-A5UC-01 17 79094590 79094590 C T AATK Missense_Mutation p.G1049D 0.15 tolerated(0.13) benign(0.012) TCGA-CC-A5UC-01 19 1497287 1497287 G T REEP6 3'UTR 0.09 TCGA-CC-A5UC-01 19 22156012 22156012 G T ZNF208 Silent p.P608P 0.16 TCGA-CC-A5UC-01 19 33493213 33493213 C T RHPN2 Missense_Mutation p.A349T 0.13 tolerated(0.21) benign(0.091) TCGA-CC-A5UC-01 19 54756260 54756260 G T LILRB5 Missense_Mutation p.S515R 0.20 tolerated(0.06) benign(0.067) TCGA-CC-A5UC-01 19 58198623 58198623 G C ZNF551 Missense_Mutation p.R327T 0.30 deleterious(0.03) probably_damaging(0.973) TCGA-CC-A5UC-01 1 11298100 11298100 C G MTOR Missense_Mutation p.D670H 0.32 tolerated(0.08) probably_damaging(0.956) TCGA-CC-A5UC-01 1 152552054 152552054 A G LCE3D 3'UTR 0.27 TCGA-CC-A5UC-01 1 158059547 158059547 T C KIRREL Missense_Mutation p.V404A 0.20 tolerated(0.22) benign(0.05) TCGA-CC-A5UC-01 1 160104376 160104376 C T ATP1A2 Missense_Mutation p.R644W 0.28 deleterious(0) probably_damaging(0.992) TCGA-CC-A5UC-01 1 16060357 16060357 C T PLEKHM2 Silent p.S996S 0.28 TCGA-CC-A5UC-01 1 181767459 181767459 C T CACNA1E Missense_Mutation p.P2144L 0.17 tolerated(0.52) probably_damaging(0.981) TCGA-CC-A5UC-01 1 185992215 185992215 T C HMCN1 Silent p.A1893A 0.18 TCGA-CC-A5UC-01 1 210412936 210412936 A T SERTAD4 Missense_Mutation p.S92C 0.34 tolerated(0.17) benign(0.319) TCGA-CC-A5UC-01 1 223176572 223176572 C A DISP1 Silent p.T611T 0.08 TCGA-CC-A5UC-01 1 225977098 225977098 A G SRP9 3'UTR 0.22 TCGA-CC-A5UC-01 1 248616426 248616426 G A OR2T2 Missense_Mutation p.G110R 0.05 deleterious(0) benign(0.187) TCGA-CC-A5UC-01 1 97250800 97250800 A G PTBP2 Silent p.T298T 0.29 TCGA-CC-A5UC-01 20 23472345 23472345 T A CST8 Missense_Mutation p.I14N 0.14 deleterious(0) possibly_damaging(0.781) TCGA-CC-A5UC-01 20 56137828 56137828 G - PCK1 Frame_Shift_Del p.D162Ifs*12 0.18 TCGA-CC-A5UC-01 21 11039096 11039096 C A BAGE2 RNA 0.04 TCGA-CC-A5UC-01 22 16279236 16279236 G T POTEH Silent p.I329I 0.03 TCGA-CC-A5UC-01 22 44328955 44328955 C T PNPLA3 Silent p.P228P 0.17 TCGA-CC-A5UC-01 2 149226010 149226010 T C MBD5 Silent p.N166N 0.08 TCGA-CC-A5UC-01 2 196759699 196759699 C A DNAH7 Splice_Site p.X1632_splice 0.22 TCGA-CC-A5UC-01 2 210680056 210680056 C A UNC80 Missense_Mutation p.L426M 0.14 probably_damaging(0.959) TCGA-CC-A5UC-01 2 233272463 233272463 C A ALPPL2 Silent p.R154R 0.20 TCGA-CC-A5UC-01 2 28761221 28761221 G A PLB1 Missense_Mutation p.M197I 0.43 tolerated(0.18) benign(0) TCGA-CC-A5UC-01 2 97884922 97884922 A G ANKRD36 Silent p.E1298E 0.08 TCGA-CC-A5UC-01 3 108363329 108363329 G A DZIP3 Nonsense_Mutation p.W487* 0.07 TCGA-CC-A5UC-01 3 113092280 113092280 G A WDR52 Missense_Mutation p.P808S 0.09 deleterious(0.01) probably_damaging(0.994) TCGA-CC-A5UC-01 3 128181964 128181964 G A DNAJB8 Missense_Mutation p.A42V 0.12 deleterious(0) probably_damaging(0.999) TCGA-CC-A5UC-01 3 131208896 131208896 C T MRPL3 Missense_Mutation p.R166Q 0.17 tolerated(0.32) benign(0.029) TCGA-CC-A5UC-01 3 39433444 39433444 T G SLC25A38 Missense_Mutation p.L186R 0.15 deleterious(0) probably_damaging(0.993) TCGA-CC-A5UC-01 4 66467871 66467871 G A EPHA5 Missense_Mutation p.T133I 0.17 deleterious(0.02) probably_damaging(0.996) TCGA-CC-A5UC-01 4 94750441 94750441 G T ATOH1 Missense_Mutation p.V122L 0.10 tolerated(0.57) benign(0.014) TCGA-CC-A5UC-01 5 114462308 114462308 C T TRIM36 Silent p.V693V 0.24 TCGA-CC-A5UC-01 5 137780443 137780443 G C REEP2 Missense_Mutation p.E102Q 0.23 deleterious(0) probably_damaging(0.938) TCGA-CC-A5UC-01 5 140579313 140579313 A G PCDHB11 5'Flank 0.11 TCGA-CC-A5UC-01 5 14358336 14358336 A G TRIO Missense_Mutation p.Y699C 0.21 benign(0.02) TCGA-CC-A5UC-01 5 178413890 178413890 G T GRM6 Missense_Mutation p.S483R 0.22 tolerated(0.29) benign(0.052) TCGA-CC-A5UC-01 5 79855469 79855469 A G ANKRD34B Missense_Mutation p.Y124H 0.25 tolerated(0.06) possibly_damaging(0.712) TCGA-CC-A5UC-01 6 12294540 12294540 A G EDN1 Missense_Mutation p.K146E 0.30 tolerated(0.35) benign(0.012) TCGA-CC-A5UC-01 6 38891940 38891940 T C DNAH8 Splice_Site p.X3437_splice 0.39 TCGA-CC-A5UC-01 6 40360440 40360440 T C LRFN2 Missense_Mutation p.I538V 0.23 tolerated(0.38) benign(0.021) TCGA-CC-A5UC-01 6 41470680 41470680 G A RP11-328M4.3 RNA 0.26 TCGA-CC-A5UC-01 6 56391319 56391319 A C DST Missense_Mutation p.L3367R 0.29 probably_damaging(0.978) TCGA-CC-A5UC-01 6 96035165 96035165 T G MANEA Intron 0.24 TCGA-CC-A5UC-01 7 39379463 39379463 C A POU6F2 Missense_Mutation p.A245E 0.19 tolerated_low_confidence(0.07) unknown(0) TCGA-CC-A5UC-01 7 47886599 47886599 A C PKD1L1 Silent p.A1677A 0.29 TCGA-CC-A5UC-01 7 73731810 73731810 G T CLIP2 Intron 0.20 TCGA-CC-A5UC-01 7 8125841 8125841 G A GLCCI1 Silent p.S439S 0.09 TCGA-CC-A5UC-01 8 27402048 27402048 G A EPHX2 3'UTR 0.19 TCGA-CC-A5UC-01 8 72935110 72935110 C A TRPA1 3'UTR 0.18 TCGA-CC-A5UC-01 8 72935111 72935111 C T TRPA1 3'UTR 0.18 TCGA-CC-A5UC-01 9 113137703 113137703 C T SVEP1 Silent p.V3515V 0.16 TCGA-CC-A5UC-01 9 114911630 114911630 T A SUSD1 Silent p.T89T 0.18 TCGA-CC-A5UC-01 9 38396047 38396047 G T ALDH1B1 Missense_Mutation p.R101L 0.31 deleterious(0.02) benign(0.434) TCGA-CC-A5UC-01 9 73426150 73426150 C A TRPM3 Intron 0.20 TCGA-CC-A5UC-01 X 118145797 118145797 A G LONRF3 Missense_Mutation p.I558V 0.26 deleterious(0.03) probably_damaging(0.998) TCGA-CC-A5UC-01 X 56590709 56590709 C G UBQLN2 Missense_Mutation p.P135A 0.14 tolerated(0.17) benign(0.008) TCGA-CC-A5UD-01 10 16877186 16877186 T A CUBN Nonsense_Mutation p.R3397* 0.27 TCGA-CC-A5UD-01 10 18282139 18282139 G A SLC39A12 Silent p.V484V 0.14 TCGA-CC-A5UD-01 10 25701321 25701321 T G GPR158 Silent p.L418L 0.28 TCGA-CC-A5UD-01 10 46322078 46322078 C T AGAP4 Missense_Mutation p.C426Y 0.93 deleterious(0.04) probably_damaging(0.997) TCGA-CC-A5UD-01 10 5995018 5995018 T A IL15RA 3'UTR 0.31 TCGA-CC-A5UD-01 10 74803644 74803660 CCTCTTAGATACTCTGT - P4HA1 Intron 0.64 TCGA-CC-A5UD-01 10 89712017 89712017 G T PTEN Splice_Site p.X212_splice 0.71 TCGA-CC-A5UD-01 11 108114838 108114838 T A ATM Missense_Mutation p.C219S 0.36 tolerated(0.38) benign(0.001) TCGA-CC-A5UD-01 11 114401366 114401366 G T NXPE1 5'UTR 0.34 TCGA-CC-A5UD-01 11 118347664 118347664 C T KMT2A Nonsense_Mutation p.R1101* 0.35 TCGA-CC-A5UD-01 11 125514071 125514071 A T CHEK1 Nonsense_Mutation p.K337* 0.50 TCGA-CC-A5UD-01 11 27721031 27721031 T A BDNF Intron 0.24 TCGA-CC-A5UD-01 11 3400424 3400424 C T ZNF195 5'Flank 0.47 TCGA-CC-A5UD-01 11 40137322 40137322 A G LRRC4C Missense_Mutation p.L174S 0.24 deleterious(0) probably_damaging(1) TCGA-CC-A5UD-01 11 428381 428381 A T ANO9 Missense_Mutation p.V400E 0.29 deleterious(0) probably_damaging(0.984) TCGA-CC-A5UD-01 11 4661967 4661967 T A OR51D1 Missense_Mutation p.L316H 0.24 deleterious(0.03) possibly_damaging(0.806) TCGA-CC-A5UD-01 11 55926911 55926911 C A OR8K5 Nonsense_Mutation p.E295* 0.33 TCGA-CC-A5UD-01 11 56185421 56185421 A T OR5R1 Silent p.A96A 0.49 TCGA-CC-A5UD-01 11 59283045 59283045 C A OR4D9 Silent p.V220V 0.45 TCGA-CC-A5UD-01 11 64794979 64794979 C T SNX15 5'UTR 0.40 TCGA-CC-A5UD-01 11 71712350 71712350 A G IL18BP Silent p.R113R 0.42 TCGA-CC-A5UD-01 11 71847147 71847147 A C FOLR3 Missense_Mutation p.E50A 0.35 deleterious(0) benign(0.001) TCGA-CC-A5UD-01 11 71850783 71850783 T A FOLR3 Missense_Mutation p.S258T 0.42 deleterious(0.03) benign(0.379) TCGA-CC-A5UD-01 11 8017529 8017529 A T EIF3F Missense_Mutation p.Q345L 0.25 deleterious(0) possibly_damaging(0.698) TCGA-CC-A5UD-01 11 9462080 9462080 A - IPO7 Frame_Shift_Del p.D926Mfs*55 0.25 TCGA-CC-A5UD-01 12 104396987 104396987 A T GLT8D2 Missense_Mutation p.N70K 0.60 deleterious(0.02) benign(0.134) TCGA-CC-A5UD-01 12 10561527 10561527 T A KLRC4 Silent p.T90T 0.57 TCGA-CC-A5UD-01 12 112685903 112685903 T A HECTD4 Missense_Mutation p.M1260L 0.20 benign(0) TCGA-CC-A5UD-01 12 113587689 113587689 C T CCDC42B Silent p.F9F 0.57 TCGA-CC-A5UD-01 12 117669901 117669901 G C NOS1 Missense_Mutation p.P1125A 0.35 deleterious(0) probably_damaging(1) TCGA-CC-A5UD-01 12 122967908 122967908 T A ZCCHC8 Intron 0.18 TCGA-CC-A5UD-01 12 50190491 50190491 A G NCKAP5L Silent p.G384G 0.21 TCGA-CC-A5UD-01 12 53723037 53723037 A T SP7 Silent p.A63A 0.38 TCGA-CC-A5UD-01 12 54118967 54118967 T A CALCOCO1 Silent p.V20V 0.60 TCGA-CC-A5UD-01 12 56557444 56557444 G T SMARCC2 3'UTR 0.15 TCGA-CC-A5UD-01 12 58163625 58163625 C A METTL1 Missense_Mutation p.G130V 0.58 tolerated(0.12) benign(0.063) TCGA-CC-A5UD-01 12 59313286 59313286 T A LRIG3 Intron 0.22 TCGA-CC-A5UD-01 12 71960645 71960645 A T LGR5 Silent p.S341S 0.52 TCGA-CC-A5UD-01 12 88548085 88548085 A T TMTC3 Missense_Mutation p.R143S 0.18 deleterious(0) probably_damaging(1) TCGA-CC-A5UD-01 12 9346836 9346836 T A PZP Splice_Site p.X365_splice 0.63 TCGA-CC-A5UD-01 12 95927304 95927304 A T USP44 Missense_Mutation p.D243E 0.31 tolerated(0.92) benign(0.001) TCGA-CC-A5UD-01 13 28748529 28748529 A T PAN3 Missense_Mutation p.Q184L 0.65 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-CC-A5UD-01 13 33092036 33092036 T C N4BP2L2 Missense_Mutation p.H123R 0.54 deleterious(0.01) benign(0.153) TCGA-CC-A5UD-01 13 35923307 35923307 T A NBEA Nonsense_Mutation p.L1989* 0.28 TCGA-CC-A5UD-01 13 95822825 95822825 C G ABCC4 Missense_Mutation p.Q595H 0.42 deleterious(0.01) benign(0.259) TCGA-CC-A5UD-01 14 106725352 106725352 A T IGHV3-23 Missense_Mutation p.V67D 0.14 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-CC-A5UD-01 14 20711071 20711071 T C OR11H4 Missense_Mutation p.F41L 0.31 tolerated(0.11) benign(0.003) TCGA-CC-A5UD-01 14 44975744 44975744 T C FSCB Silent p.E149E 0.62 TCGA-CC-A5UD-01 14 65209799 65209799 A T PLEKHG3 Missense_Mutation p.Q957L 0.29 tolerated(0.17) benign(0.038) TCGA-CC-A5UD-01 14 69994595 69994595 C T PLEKHD1 Missense_Mutation p.R433C 0.22 deleterious(0) possibly_damaging(0.594) TCGA-CC-A5UD-01 14 75469779 75469779 G C EIF2B2 Missense_Mutation p.R29P 0.31 tolerated(0.35) benign(0.015) TCGA-CC-A5UD-01 14 80997175 80997175 A C CEP128 Missense_Mutation p.L979R 0.57 deleterious(0) probably_damaging(0.999) TCGA-CC-A5UD-01 14 91787522 91787522 T A CCDC88C Missense_Mutation p.E490V 0.22 deleterious(0) probably_damaging(0.962) TCGA-CC-A5UD-01 15 101606245 101606246 GT - LRRK1 Frame_Shift_Del p.V1869Afs*23 0.51 TCGA-CC-A5UD-01 15 24920825 24920825 C T NPAP1 5'UTR 0.86 TCGA-CC-A5UD-01 15 33194233 33194233 T A FMN1 Missense_Mutation p.H906L 0.83 tolerated(0.1) possibly_damaging(0.503) TCGA-CC-A5UD-01 15 48427084 48427084 T A SLC24A5 Missense_Mutation p.S165T 0.82 tolerated(0.38) benign(0.118) TCGA-CC-A5UD-01 15 54306838 54306838 T A UNC13C Missense_Mutation p.S580T 0.81 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-CC-A5UD-01 15 55489153 55489153 C A RSL24D1 5'UTR 0.08 TCGA-CC-A5UD-01 15 64448165 64448165 T A PPIB 3'UTR 0.88 TCGA-CC-A5UD-01 16 10032379 10032379 T A GRIN2A Silent p.G148G 0.60 TCGA-CC-A5UD-01 16 1511413 1511413 T A CLCN7 Missense_Mutation p.N115I 0.42 tolerated(0.15) benign(0.081) TCGA-CC-A5UD-01 16 23711862 23711862 T A ERN2 Missense_Mutation p.E556V 0.56 tolerated(0.05) possibly_damaging(0.833) TCGA-CC-A5UD-01 16 30793273 30793273 C T ZNF629 Silent p.Q792Q 0.40 TCGA-CC-A5UD-01 16 48395767 48395767 T A SIAH1 Missense_Mutation p.L222F 0.81 deleterious(0) probably_damaging(0.994) TCGA-CC-A5UD-01 16 50368683 50368683 T A BRD7 Nonsense_Mutation p.R276* 0.90 TCGA-CC-A5UD-01 16 697866 697866 C A FAM195A Missense_Mutation p.P132T 0.38 deleterious(0) probably_damaging(0.95) TCGA-CC-A5UD-01 16 71007743 71007743 G A HYDIN Missense_Mutation p.P1740S 0.10 possibly_damaging(0.556) TCGA-CC-A5UD-01 16 813260 813260 C T MSLN Missense_Mutation p.A38V 0.30 tolerated(0.31) benign(0.018) TCGA-CC-A5UD-01 16 819494 819494 T A MSLNL Silent p.S1032S 0.26 TCGA-CC-A5UD-01 17 15619693 15619693 A T ZNF286A Missense_Mutation p.T219S 0.54 tolerated(0.6) benign(0.002) TCGA-CC-A5UD-01 17 17910349 17910349 G C LRRC48 Missense_Mutation p.C405S 0.21 deleterious(0) possibly_damaging(0.806) TCGA-CC-A5UD-01 17 18327860 18327860 T A AL353997.3 RNA 0.16 TCGA-CC-A5UD-01 17 20358665 20358665 A T LGALS9B Missense_Mutation p.F164Y 0.26 tolerated(0.19) benign(0.032) TCGA-CC-A5UD-01 17 20423176 20423176 A T AC015818.3 RNA 0.09 TCGA-CC-A5UD-01 17 30616020 30616020 A T RHBDL3 Silent p.T168T 0.58 TCGA-CC-A5UD-01 17 36478426 36478426 A T MRPL45 Missense_Mutation p.E290V 0.20 tolerated(0.43) benign(0.068) TCGA-CC-A5UD-01 17 38711550 38711550 A T CCR7 Missense_Mutation p.L194H 0.55 deleterious(0) possibly_damaging(0.877) TCGA-CC-A5UD-01 17 48191392 48191392 C T SAMD14 Missense_Mutation p.G360S 0.29 tolerated(0.99) probably_damaging(1) TCGA-CC-A5UD-01 17 4936947 4936947 A T SLC52A1 Silent p.G279G 0.85 TCGA-CC-A5UD-01 17 56621179 56621179 A T C17orf47 Silent p.V123V 0.61 TCGA-CC-A5UD-01 17 72351437 72351437 T C KIF19 Missense_Mutation p.S995P 0.18 tolerated_low_confidence(0.22) benign(0) TCGA-CC-A5UD-01 17 73760089 73760089 C A GALK1 Missense_Mutation p.A82S 0.27 tolerated(0.14) benign(0.128) TCGA-CC-A5UD-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.76 deleterious(0) probably_damaging(0.997) TCGA-CC-A5UD-01 17 7699791 7699791 A G DNAH2 Missense_Mutation p.I2562V 0.84 possibly_damaging(0.644) TCGA-CC-A5UD-01 17 80049390 80049390 C T FASN Silent p.V400V 0.28 TCGA-CC-A5UD-01 18 13885429 13885429 A G MC2R Missense_Mutation p.I30T 0.37 deleterious(0) benign(0.079) TCGA-CC-A5UD-01 18 21181167 21181167 T A ANKRD29 3'UTR 0.48 TCGA-CC-A5UD-01 18 31320038 31320038 A T ASXL3 Silent p.T890T 0.43 TCGA-CC-A5UD-01 19 11447930 11447930 G A RAB3D Missense_Mutation p.P49L 0.73 deleterious(0.01) possibly_damaging(0.575) TCGA-CC-A5UD-01 19 20976622 20976622 A G ZNF66 Missense_Mutation p.H55R 0.35 tolerated(0.06) benign(0.001) TCGA-CC-A5UD-01 19 23543010 23543010 T A ZNF91 Missense_Mutation p.H924L 0.28 tolerated(0.59) benign(0.194) TCGA-CC-A5UD-01 19 4110509 4110509 T A MAP2K2 Missense_Mutation p.M150L 0.47 deleterious(0.01) probably_damaging(1) TCGA-CC-A5UD-01 19 41949136 41949136 C A C19orf69 Missense_Mutation p.P21H 0.50 deleterious(0) probably_damaging(0.979) TCGA-CC-A5UD-01 19 50412454 50412454 T C NUP62 Missense_Mutation p.Q204R 0.46 tolerated(0.24) benign(0.201) TCGA-CC-A5UD-01 19 52132822 52132822 G T SIGLEC5 Missense_Mutation p.S163R 0.39 deleterious(0.02) benign(0.068) TCGA-CC-A5UD-01 19 52570324 52570324 T A ZNF841 Nonsense_Mutation p.R271* 0.41 TCGA-CC-A5UD-01 19 53885102 53885102 T C ZNF525 Missense_Mutation p.S424P 0.23 deleterious(0.01) possibly_damaging(0.649) TCGA-CC-A5UD-01 19 54327460 54327460 T A NLRP12 5'UTR 0.33 TCGA-CC-A5UD-01 19 55496458 55496458 T A NLRP2 Missense_Mutation p.C692S 0.48 deleterious(0.01) possibly_damaging(0.535) TCGA-CC-A5UD-01 19 56156253 56156253 A T ZNF581 Missense_Mutation p.S106C 0.49 deleterious(0) probably_damaging(0.962) TCGA-CC-A5UD-01 19 57088220 57088220 T G ZNF470 Missense_Mutation p.C141W 0.38 tolerated(0.16) benign(0.076) TCGA-CC-A5UD-01 19 57175003 57175003 A T ZNF835 Missense_Mutation p.C522S 0.40 tolerated_low_confidence(0.87) benign(0) TCGA-CC-A5UD-01 1 10384901 10384901 A C KIF1B Missense_Mutation p.T829P 0.44 deleterious(0.03) probably_damaging(0.997) TCGA-CC-A5UD-01 1 112045693 112045693 T A ADORA3 Missense_Mutation p.H95L 0.43 tolerated_low_confidence(0.11) possibly_damaging(0.471) TCGA-CC-A5UD-01 1 113655151 113655151 G T LRIG2 Missense_Mutation p.A617S 0.22 tolerated(0.25) benign(0.03) TCGA-CC-A5UD-01 1 1223365 1223365 G T SCNN1D Missense_Mutation p.G537V 0.51 deleterious(0) benign(0.332) TCGA-CC-A5UD-01 1 144854658 144854658 T A PDE4DIP Splice_Site p.X2272_splice 0.05 TCGA-CC-A5UD-01 1 145688137 145688137 A T RNF115 Missense_Mutation p.T278S 0.25 tolerated(0.52) benign(0.018) TCGA-CC-A5UD-01 1 152279631 152279631 T G FLG Silent p.S2577S 0.23 TCGA-CC-A5UD-01 1 152732782 152732782 T A KPRP Missense_Mutation p.Y240N 0.24 deleterious(0) probably_damaging(0.924) TCGA-CC-A5UD-01 1 152785001 152785001 C G LCE1B Missense_Mutation p.P27A 0.48 deleterious_low_confidence(0) unknown(0) TCGA-CC-A5UD-01 1 155449286 155449286 T A ASH1L Silent p.A1125A 0.27 TCGA-CC-A5UD-01 1 156594457 156594457 T A HAPLN2 Silent p.P207P 0.21 TCGA-CC-A5UD-01 1 156670823 156670823 T A CRABP2 Missense_Mutation p.K31M 0.26 deleterious(0.04) benign(0.202) TCGA-CC-A5UD-01 1 157767574 157767574 T A FCRL1 Intron 0.16 TCGA-CC-A5UD-01 1 163295880 163295880 G C NUF2 Missense_Mutation p.E13D 0.18 tolerated(0.51) benign(0.011) TCGA-CC-A5UD-01 1 16748620 16748620 A G SPATA21 Intron 0.56 TCGA-CC-A5UD-01 1 178490806 178490806 G T TEX35 Intron 0.21 TCGA-CC-A5UD-01 1 179562787 179562787 T A TDRD5 Missense_Mutation p.L142Q 0.24 deleterious(0) probably_damaging(1) TCGA-CC-A5UD-01 1 182353642 182353642 A G GLUL Silent p.R340R 0.20 TCGA-CC-A5UD-01 1 196197434 196197434 G C KCNT2 Missense_Mutation p.L1110V 0.19 tolerated(1) benign(0.001) TCGA-CC-A5UD-01 1 201060850 201060850 G A CACNA1S Silent p.L204L 0.15 TCGA-CC-A5UD-01 1 20474788 20474788 T A PLA2G2F Missense_Mutation p.L177H 0.42 tolerated(0.12) probably_damaging(0.992) TCGA-CC-A5UD-01 1 205553249 205553249 T A MFSD4 Missense_Mutation p.L286Q 0.26 tolerated(0.71) benign(0.002) TCGA-CC-A5UD-01 1 216420052 216420052 T A USH2A Missense_Mutation p.Q895L 0.26 benign(0.008) TCGA-CC-A5UD-01 1 228003457 228003457 T A PRSS38 Missense_Mutation p.S14T 0.34 tolerated_low_confidence(0.48) unknown(0) TCGA-CC-A5UD-01 1 228447428 228447429 - A OBSCN Frame_Shift_Ins p.S1697Kfs*3 0.24 TCGA-CC-A5UD-01 1 228563447 228563447 G A OBSCN Missense_Mutation p.A8527T 0.24 possibly_damaging(0.533) TCGA-CC-A5UD-01 1 233334740 233334740 G C PCNXL2 Missense_Mutation p.A1004G 0.03 tolerated(0.38) benign(0.001) TCGA-CC-A5UD-01 1 27107029 27107029 A T ARID1A Missense_Mutation p.S2214C 0.41 probably_damaging(0.992) TCGA-CC-A5UD-01 1 27684710 27684710 C T MAP3K6 Silent p.P959P 0.46 TCGA-CC-A5UD-01 1 32256132 32256132 C A SPOCD1 3'UTR 0.59 TCGA-CC-A5UD-01 1 3328344 3328344 T A PRDM16 Missense_Mutation p.L528Q 0.36 deleterious(0.01) probably_damaging(0.996) TCGA-CC-A5UD-01 1 34038176 34038176 G A CSMD2 Silent p.G2566G 0.39 TCGA-CC-A5UD-01 1 38287832 38287832 T G MTF1 Missense_Mutation p.L576F 0.46 deleterious(0) probably_damaging(0.995) TCGA-CC-A5UD-01 1 42657316 42657316 T A FOXJ3 Missense_Mutation p.T337S 0.35 tolerated(0.36) benign(0.055) TCGA-CC-A5UD-01 1 43055011 43055011 G A CCDC30 Missense_Mutation p.V414I 0.40 tolerated(0.63) benign(0.004) TCGA-CC-A5UD-01 1 45307528 45307528 A T PTCH2 Missense_Mutation p.W86R 0.39 deleterious(0) probably_damaging(0.963) TCGA-CC-A5UD-01 1 70385239 70385239 C T LRRC7 Intron 0.55 TCGA-CC-A5UD-01 20 20585826 20585826 T A RALGAPA2 Silent p.R677R 0.24 TCGA-CC-A5UD-01 20 3145067 3145067 G C LZTS3 3'UTR 0.58 TCGA-CC-A5UD-01 20 54987340 54987340 A T CASS4 5'UTR 0.67 TCGA-CC-A5UD-01 20 56227157 56227157 T A PMEPA1 Silent p.A272A 0.34 TCGA-CC-A5UD-01 22 20102931 20102931 C T TRMT2A Missense_Mutation p.G250R 0.37 deleterious(0) possibly_damaging(0.684) TCGA-CC-A5UD-01 22 37334599 37334599 C A CSF2RB 3'UTR 0.28 TCGA-CC-A5UD-01 22 37771020 37771020 G T ELFN2 Missense_Mutation p.N185K 0.36 deleterious(0) probably_damaging(1) TCGA-CC-A5UD-01 22 38082401 38082401 T A NOL12 Translation_Start_Site p.M1? 0.41 deleterious(0) unknown(0) TCGA-CC-A5UD-01 22 39909580 39909580 G T MIEF1 Missense_Mutation p.W215L 0.39 deleterious(0) probably_damaging(0.998) TCGA-CC-A5UD-01 22 41632548 41632548 T A CHADL Missense_Mutation p.E668V 0.37 deleterious(0.03) probably_damaging(0.984) TCGA-CC-A5UD-01 2 10830090 10830090 C A NOL10 5'UTR 0.38 TCGA-CC-A5UD-01 2 108999919 108999919 A T SULT1C4 Nonsense_Mutation p.K190* 0.58 TCGA-CC-A5UD-01 2 120124512 120124512 A T DBI 5'Flank 0.38 TCGA-CC-A5UD-01 2 152539201 152539201 T A NEB Missense_Mutation p.K973M 0.28 probably_damaging(1) TCGA-CC-A5UD-01 2 162279937 162279937 C A TBR1 Silent p.R416R 0.31 TCGA-CC-A5UD-01 2 163124064 163124064 T C IFIH1 Silent p.V941V 0.39 TCGA-CC-A5UD-01 2 193059223 193059223 A T TMEFF2 Missense_Mutation p.C10S 0.38 tolerated_low_confidence(0.54) benign(0) TCGA-CC-A5UD-01 2 198508920 198508920 C T RFTN2 Missense_Mutation p.A134T 0.56 tolerated(1) benign(0.003) TCGA-CC-A5UD-01 2 212812232 212812232 T A ERBB4 Missense_Mutation p.Y115F 0.61 tolerated(0.25) benign(0.031) TCGA-CC-A5UD-01 2 238275833 238275833 A T COL6A3 Missense_Mutation p.V1666E 0.62 probably_damaging(0.995) TCGA-CC-A5UD-01 2 242283230 242283230 A T SEPT2 Nonsense_Mutation p.R254* 0.28 TCGA-CC-A5UD-01 2 24438936 24438936 A G ITSN2 Silent p.D1324D 0.19 TCGA-CC-A5UD-01 2 25141705 25141705 C A ADCY3 Missense_Mutation p.R51L 0.30 tolerated(0.06) benign(0.009) TCGA-CC-A5UD-01 2 25705696 25705696 T C DTNB Missense_Mutation p.M350V 0.68 tolerated(0.52) benign(0.001) TCGA-CC-A5UD-01 2 31571159 31571159 T A XDH Missense_Mutation p.Q1041L 0.65 deleterious(0.02) possibly_damaging(0.521) TCGA-CC-A5UD-01 2 37458806 37458806 A T CEBPZ 5'UTR 0.34 TCGA-CC-A5UD-01 2 40655701 40655701 A G SLC8A1 Missense_Mutation p.Y574H 0.57 deleterious(0) probably_damaging(0.998) TCGA-CC-A5UD-01 2 73678026 73678026 G T ALMS1 Missense_Mutation p.A1457S 0.62 possibly_damaging(0.451) TCGA-CC-A5UD-01 3 109049318 109049318 T A DPPA4 Intron 0.28 TCGA-CC-A5UD-01 3 119462964 119462964 G A MAATS1 Missense_Mutation p.R608Q 0.29 deleterious(0.01) probably_damaging(0.977) TCGA-CC-A5UD-01 3 13670761 13670765 TCAGC CCA FBLN2 Frame_Shift_Del p.R939Gfs*12 0.49 TCGA-CC-A5UD-01 3 142542413 142542413 T C PCOLCE2 Missense_Mutation p.T304A 0.20 tolerated(0.12) benign(0.003) TCGA-CC-A5UD-01 3 160803895 160803895 T A B3GALNT1 Missense_Mutation p.R216S 0.21 deleterious(0) probably_damaging(0.999) TCGA-CC-A5UD-01 3 166960387 166960387 C T ZBBX Missense_Mutation p.D767N 0.33 deleterious(0) benign(0.137) TCGA-CC-A5UD-01 3 183957516 183957516 T A VWA5B2 Missense_Mutation p.L811Q 0.23 deleterious(0) probably_damaging(0.928) TCGA-CC-A5UD-01 3 184039550 184039550 C G EIF4G1 Missense_Mutation p.P400R 0.61 tolerated(0.06) probably_damaging(0.996) TCGA-CC-A5UD-01 3 195513058 195513058 A T MUC4 Missense_Mutation p.V1798D 0.19 benign(0.006) TCGA-CC-A5UD-01 3 37860441 37860441 G C ITGA9 Missense_Mutation p.E1023D 0.30 tolerated(0.37) benign(0.022) TCGA-CC-A5UD-01 3 383657 383657 G T CHL1 Missense_Mutation p.A191S 0.52 tolerated(0.93) probably_damaging(1) TCGA-CC-A5UD-01 3 38951586 38951586 G - SCN11A Frame_Shift_Del p.Q358Kfs*34 0.18 TCGA-CC-A5UD-01 3 41266101 41266101 C A CTNNB1 Missense_Mutation p.S33Y 0.29 deleterious(0) possibly_damaging(0.64) TCGA-CC-A5UD-01 3 44879894 44879894 T A KIF15 Missense_Mutation p.I1100N 0.57 deleterious(0.04) possibly_damaging(0.878) TCGA-CC-A5UD-01 3 46244963 46244963 A T CCR1 Missense_Mutation p.L281Q 0.58 tolerated(0.42) probably_damaging(0.95) TCGA-CC-A5UD-01 3 48339972 48339972 T - NME6 Frame_Shift_Del p.Q20Rfs*4 0.20 TCGA-CC-A5UD-01 3 48457128 48457128 T A PLXNB1 Missense_Mutation p.S1220C 0.28 deleterious(0.05) probably_damaging(0.926) TCGA-CC-A5UD-01 3 49042389 49042389 A T P4HTM Missense_Mutation p.H328L 0.56 deleterious(0) benign(0.009) TCGA-CC-A5UD-01 3 52848087 52848087 C A ITIH4 Missense_Mutation p.G876V 0.27 deleterious(0) probably_damaging(1) TCGA-CC-A5UD-01 3 52861120 52861120 A G ITIH4 Silent p.A115A 0.46 TCGA-CC-A5UD-01 3 78717373 78717373 T A ROBO1 Silent p.T570T 0.30 TCGA-CC-A5UD-01 4 16510279 16510279 C T LDB2 Missense_Mutation p.R257Q 0.48 deleterious(0.01) benign(0.135) TCGA-CC-A5UD-01 4 178231110 178231110 G C NEIL3 Translation_Start_Site p.M1? 0.05 deleterious(0) probably_damaging(0.999) TCGA-CC-A5UD-01 4 178256896 178256896 T C NEIL3 Silent p.Y111Y 0.86 TCGA-CC-A5UD-01 4 21950197 21950197 C T KCNIP4 Missense_Mutation p.G20S 0.21 tolerated_low_confidence(0.4) benign(0) TCGA-CC-A5UD-01 4 2252295 2252295 C A MXD4 Silent p.R202R 0.50 TCGA-CC-A5UD-01 4 26491934 26491934 G T CCKAR 5'UTR 0.05 TCGA-CC-A5UD-01 4 43032457 43032457 T A GRXCR1 Missense_Mutation p.M258K 0.27 tolerated(1) probably_damaging(0.957) TCGA-CC-A5UD-01 4 48529665 48529665 T C FRYL Silent p.V2382V 0.52 TCGA-CC-A5UD-01 4 55593652 55593652 C A KIT Missense_Mutation p.P573Q 0.56 deleterious(0) probably_damaging(0.948) TCGA-CC-A5UD-01 4 86989078 86989078 T A MAPK10 Missense_Mutation p.Q278L 0.73 tolerated(0.74) benign(0.005) TCGA-CC-A5UD-01 5 1053526 1053526 T C SLC12A7 Missense_Mutation p.D1033G 0.17 tolerated(0.16) benign(0) TCGA-CC-A5UD-01 5 133480499 133480499 C T TCF7 Intron 0.35 TCGA-CC-A5UD-01 5 134364795 134364795 G C PITX1 Missense_Mutation p.P207A 0.38 tolerated(0.06) benign(0.145) TCGA-CC-A5UD-01 5 13830159 13830159 A T DNAH5 Silent p.P2075P 0.18 TCGA-CC-A5UD-01 5 139189340 139189340 A T PSD2 Silent p.A105A 0.54 TCGA-CC-A5UD-01 5 139909162 139909162 A T ANKHD1 Missense_Mutation p.N2211Y 0.41 possibly_damaging(0.894) TCGA-CC-A5UD-01 5 140308516 140308516 A T PCDHAC1 Missense_Mutation p.Q680L 0.45 tolerated(1) benign(0) TCGA-CC-A5UD-01 5 140475814 140475814 A T PCDHB2 Missense_Mutation p.R480S 0.35 tolerated_low_confidence(0.46) benign(0.021) TCGA-CC-A5UD-01 5 149431544 149431544 A T HMGXB3 Missense_Mutation p.D1223V 0.43 deleterious(0) probably_damaging(0.944) TCGA-CC-A5UD-01 5 150663626 150663626 G T SLC36A3 Missense_Mutation p.T359N 0.43 deleterious(0) possibly_damaging(0.881) TCGA-CC-A5UD-01 5 15928539 15928539 A T FBXL7 Missense_Mutation p.Y223F 0.22 tolerated(0.65) benign(0.076) TCGA-CC-A5UD-01 5 16704767 16704767 T A MYO10 Nonsense_Mutation p.K733* 0.25 TCGA-CC-A5UD-01 5 180218676 180218676 C T MGAT1 Silent p.A432A 0.47 TCGA-CC-A5UD-01 5 32791392 32791392 A T NPR3 3'UTR 0.71 TCGA-CC-A5UD-01 5 71494849 71494849 T C MAP1B Silent p.Y1889Y 0.60 TCGA-CC-A5UD-01 5 79057643 79057643 A T CMYA5 Missense_Mutation p.E3757V 0.52 probably_damaging(0.973) TCGA-CC-A5UD-01 5 82834673 82834673 G A VCAN Missense_Mutation p.E1951K 0.24 tolerated(0.06) benign(0.11) TCGA-CC-A5UD-01 5 89971058 89971058 A T GPR98 Splice_Site p.X1704_splice 0.39 TCGA-CC-A5UD-01 5 95242487 95242487 C G ELL2 Splice_Site p.X161_splice 0.39 TCGA-CC-A5UD-01 5 9630202 9630202 G T TAS2R1 5'UTR 0.64 TCGA-CC-A5UD-01 6 116277657 116277657 T A FRK Missense_Mutation p.T306S 0.39 deleterious(0) probably_damaging(0.992) TCGA-CC-A5UD-01 6 143092423 143092423 C A HIVEP2 Silent p.L1151L 0.38 TCGA-CC-A5UD-01 6 155569180 155569180 C T TIAM2 Silent p.P1233P 0.81 TCGA-CC-A5UD-01 6 17637902 17637902 C T NUP153 Missense_Mutation p.G649E 0.31 tolerated(0.05) benign(0.009) TCGA-CC-A5UD-01 6 31660873 31660873 T A ABHD16A Missense_Mutation p.E186V 0.78 tolerated(0.08) benign(0.255) TCGA-CC-A5UD-01 6 32826201 32826201 A T PSMB9 Missense_Mutation p.S151C 0.39 deleterious(0) probably_damaging(1) TCGA-CC-A5UD-01 6 35280290 35280290 A T DEF6 Missense_Mutation p.E212V 0.82 deleterious(0) probably_damaging(0.998) TCGA-CC-A5UD-01 6 41309647 41309647 T C NCR2 Silent p.S170S 0.79 TCGA-CC-A5UD-01 7 123302237 123302237 T A LMOD2 Silent p.I199I 0.43 TCGA-CC-A5UD-01 7 123332584 123332584 C T WASL Silent p.P388P 0.38 TCGA-CC-A5UD-01 7 127894794 127894794 T A LEP Missense_Mutation p.L161Q 0.57 deleterious(0) probably_damaging(1) TCGA-CC-A5UD-01 7 135095305 135095305 T A CNOT4 Nonsense_Mutation p.K261* 0.46 TCGA-CC-A5UD-01 7 137075901 137075901 T A DGKI 3'UTR 0.52 TCGA-CC-A5UD-01 7 138602195 138602195 G T KIAA1549 Missense_Mutation p.S726Y 0.37 deleterious(0.01) possibly_damaging(0.59) TCGA-CC-A5UD-01 7 141765270 141765270 T A MGAM Splice_Site p.X1540_splice 0.59 TCGA-CC-A5UD-01 7 149529876 149529876 A T SSPO RNA 0.43 TCGA-CC-A5UD-01 7 158672638 158672638 A G WDR60 Silent p.K279K 0.38 TCGA-CC-A5UD-01 7 20698148 20698148 G T ABCB5 Missense_Mutation p.G519V 0.42 deleterious(0) probably_damaging(0.997) TCGA-CC-A5UD-01 7 20762841 20762841 A T ABCB5 Missense_Mutation p.K875M 0.11 deleterious(0) probably_damaging(0.998) TCGA-CC-A5UD-01 7 2984108 2984108 T A CARD11 Missense_Mutation p.Q141L 0.41 deleterious(0.01) probably_damaging(0.947) TCGA-CC-A5UD-01 7 35293206 35293206 G T TBX20 Missense_Mutation p.P9H 0.42 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-CC-A5UD-01 7 4188918 4188918 T A SDK1 Missense_Mutation p.L1483H 0.29 deleterious(0.03) probably_damaging(0.928) TCGA-CC-A5UD-01 7 4201422 4201422 A T SDK1 Silent p.P1578P 0.42 TCGA-CC-A5UD-01 7 42088201 42088201 A T GLI3 Missense_Mutation p.F190I 0.33 deleterious(0) probably_damaging(0.996) TCGA-CC-A5UD-01 7 53103631 53103631 G A POM121L12 Silent p.P89P 0.50 TCGA-CC-A5UD-01 7 74524809 74524809 A T GTF2IRD2B Missense_Mutation p.E18V 0.22 deleterious_low_confidence(0.01) benign(0.328) TCGA-CC-A5UD-01 7 82583094 82583094 G T PCLO Missense_Mutation p.P2392Q 0.33 unknown(0) TCGA-CC-A5UD-01 7 94296716 94296716 A T PEG10 3'UTR 0.34 TCGA-CC-A5UD-01 7 97484710 97484710 T A ASNS Silent p.G364G 0.27 TCGA-CC-A5UD-01 7 99987596 99987596 C G PILRA Silent p.V180V 0.34 TCGA-CC-A5UD-01 8 107763248 107763248 A G OXR1 3'UTR 0.48 TCGA-CC-A5UD-01 8 116599393 116599393 A C TRPS1 Missense_Mutation p.N845K 0.14 deleterious_low_confidence(0) benign(0.304) TCGA-CC-A5UD-01 8 120431542 120431542 T A NOV Missense_Mutation p.M245K 0.40 deleterious(0) benign(0.315) TCGA-CC-A5UD-01 8 124361592 124361592 A G ATAD2 Missense_Mutation p.I580T 0.16 deleterious(0) probably_damaging(0.998) TCGA-CC-A5UD-01 8 130854358 130854358 T A FAM49B 3'UTR 0.23 TCGA-CC-A5UD-01 8 133595953 133595953 T A LRRC6 Missense_Mutation p.Q405L 0.17 tolerated(0.08) benign(0.045) TCGA-CC-A5UD-01 8 144899155 144899155 G A PUF60 Silent p.S435S 0.09 TCGA-CC-A5UD-01 8 144943295 144943295 T A EPPK1 Missense_Mutation p.Q1376L 0.41 benign(0.016) TCGA-CC-A5UD-01 8 145640635 145640635 T A SLC39A4 Missense_Mutation p.S215C 0.12 deleterious(0) probably_damaging(0.946) TCGA-CC-A5UD-01 8 20112615 20112615 G A LZTS1 Silent p.R26R 0.25 TCGA-CC-A5UD-01 8 22458397 22458397 G T C8orf58 Missense_Mutation p.G15W 0.66 deleterious(0) probably_damaging(0.998) TCGA-CC-A5UD-01 8 35542098 35542098 A T UNC5D Splice_Site p.X251_splice 0.19 TCGA-CC-A5UD-01 8 38133854 38133854 T G WHSC1L1 Silent p.A1344A 0.25 TCGA-CC-A5UD-01 8 61765635 61765635 C T CHD7 Silent p.L2117L 0.28 TCGA-CC-A5UD-01 9 111853343 111853343 T A TMEM245 Nonsense_Mutation p.R337* 0.62 TCGA-CC-A5UD-01 9 114500592 114500592 A T C9orf84 Missense_Mutation p.I398K 0.46 tolerated(0.06) benign(0.146) TCGA-CC-A5UD-01 9 116135994 116135994 G A HDHD3 Missense_Mutation p.P214L 0.60 tolerated(0.1) benign(0.006) TCGA-CC-A5UD-01 9 132980139 132980139 A T NCS1 Missense_Mutation p.S40C 0.28 deleterious(0) possibly_damaging(0.663) TCGA-CC-A5UD-01 9 134525525 134525525 T G RAPGEF1 Missense_Mutation p.Q103H 0.76 tolerated(0.27) probably_damaging(0.964) TCGA-CC-A5UD-01 9 136302900 136302900 C T ADAMTS13 Silent p.A489A 0.14 TCGA-CC-A5UD-01 9 18776974 18776974 A T ADAMTSL1 Missense_Mutation p.Q916L 0.82 deleterious(0.02) benign(0.155) TCGA-CC-A5UD-01 9 19786418 19786418 T A SLC24A2 Missense_Mutation p.L149F 0.81 deleterious(0) probably_damaging(0.999) TCGA-CC-A5UD-01 9 21141360 21141360 C A IFNW1 Missense_Mutation p.Q70H 0.80 tolerated(0.08) benign(0.156) TCGA-CC-A5UD-01 9 82333727 82333727 T A TLE4 Missense_Mutation p.H477Q 0.23 tolerated(0.09) possibly_damaging(0.614) TCGA-CC-A5UD-01 9 90535600 90535600 G C SPATA31C1 RNA 0.26 TCGA-CC-A5UD-01 X 134994077 134994077 A T SAGE1 Missense_Mutation p.Y829F 0.85 tolerated(0.15) possibly_damaging(0.496) TCGA-CC-A5UD-01 X 1718233 1718233 G T AKAP17A Nonsense_Mutation p.E354* 0.60 TCGA-CC-A5UD-01 X 25033712 25033712 T A ARX Missense_Mutation p.Q48L 0.86 deleterious(0.01) unknown(0) TCGA-CC-A5UD-01 X 71425152 71425152 G T ERCC6L Missense_Mutation p.N1155K 0.81 tolerated(0.2) benign(0.003) TCGA-CC-A5UD-01 X 79989645 79989645 T A BRWD3 Missense_Mutation p.E353V 0.08 tolerated(0.06) benign(0.1) TCGA-CC-A5UD-01 X 83126557 83126557 G A CYLC1 Silent p.L52L 0.61 TCGA-CC-A5UE-01 10 100021841 100021841 C T LOXL4 Missense_Mutation p.R136H 0.23 deleterious(0.01) benign(0.159) TCGA-CC-A5UE-01 10 103921354 103921354 G T NOLC1 Missense_Mutation p.A595S 0.74 tolerated_low_confidence(0.1) unknown(0) TCGA-CC-A5UE-01 10 104489489 104489489 C T SFXN2 Missense_Mutation p.P173S 0.82 tolerated(0.09) possibly_damaging(0.461) TCGA-CC-A5UE-01 10 116061116 116061116 A C AFAP1L2 Silent p.A513A 0.77 TCGA-CC-A5UE-01 10 127455372 127455372 G A MMP21 Silent p.G523G 0.73 TCGA-CC-A5UE-01 10 12858286 12858286 G A CAMK1D Silent p.P264P 0.09 TCGA-CC-A5UE-01 10 46965864 46965864 G T SYT15 Missense_Mutation p.Q225K 0.33 deleterious(0) probably_damaging(0.926) TCGA-CC-A5UE-01 10 73765630 73765630 C A CHST3 Missense_Mutation p.D10E 0.75 tolerated_low_confidence(0.26) benign(0.011) TCGA-CC-A5UE-01 11 100922293 100922293 C T PGR Missense_Mutation p.R740Q 0.29 deleterious(0.01) probably_damaging(0.952) TCGA-CC-A5UE-01 11 103908038 103908038 G A DDI1 Missense_Mutation p.R163H 0.22 deleterious(0.01) benign(0.158) TCGA-CC-A5UE-01 11 104916052 104916052 G T CARD16 5'Flank 0.29 TCGA-CC-A5UE-01 11 118376454 118376454 C T KMT2A Nonsense_Mutation p.R3283* 0.42 TCGA-CC-A5UE-01 11 124765401 124765401 C A ROBO4 Missense_Mutation p.A330S 0.46 tolerated(0.22) possibly_damaging(0.65) TCGA-CC-A5UE-01 11 1466647 1466647 C A BRSK2 Missense_Mutation p.F358L 0.51 deleterious(0.03) probably_damaging(0.993) TCGA-CC-A5UE-01 11 17548323 17548323 C T USH1C Missense_Mutation p.D186N 0.29 deleterious(0.02) possibly_damaging(0.452) TCGA-CC-A5UE-01 11 2189846 2189846 G A TH Missense_Mutation p.P152L 0.67 tolerated(0.65) benign(0.002) TCGA-CC-A5UE-01 11 30410485 30410485 G T MPPED2 Missense_Mutation p.S262Y 0.42 deleterious(0.02) benign(0.008) TCGA-CC-A5UE-01 11 36595488 36595488 G T RAG1 Missense_Mutation p.D212Y 0.23 tolerated_low_confidence(0.12) probably_damaging(0.994) TCGA-CC-A5UE-01 11 55065682 55065682 A G TRIM51HP RNA 0.31 TCGA-CC-A5UE-01 11 58660207 58660207 G C GLYATL1P2 RNA 0.22 TCGA-CC-A5UE-01 11 60698051 60698051 G T TMEM132A Missense_Mutation p.K312N 0.24 deleterious(0.02) benign(0.042) TCGA-CC-A5UE-01 11 6943217 6943217 A T OR2D3 Missense_Mutation p.R329W 0.42 deleterious(0) possibly_damaging(0.613) TCGA-CC-A5UE-01 11 8752447 8752447 G - ST5 Frame_Shift_Del p.C131Afs*22 0.35 TCGA-CC-A5UE-01 11 92577730 92577730 A G FAT3 Missense_Mutation p.M3733V 0.45 benign(0) TCGA-CC-A5UE-01 12 40657644 40657644 G T LRRK2 Missense_Mutation p.V533F 0.20 tolerated(0.05) benign(0.197) TCGA-CC-A5UE-01 12 49089809 49089809 C A CCNT1 Missense_Mutation p.A227S 0.25 tolerated(0.59) benign(0.013) TCGA-CC-A5UE-01 13 28498513 28498513 G T PDX1 Missense_Mutation p.R176L 0.86 deleterious(0) probably_damaging(1) TCGA-CC-A5UE-01 14 21679444 21679444 C A HNRNPC Nonsense_Mutation p.E287* 0.39 TCGA-CC-A5UE-01 14 75016623 75016623 C A LTBP2 Missense_Mutation p.G578C 0.41 deleterious(0) probably_damaging(0.975) TCGA-CC-A5UE-01 14 75515470 75515470 G A MLH3 Missense_Mutation p.R297W 0.28 deleterious(0) probably_damaging(1) TCGA-CC-A5UE-01 15 100269392 100269392 A T LYSMD4 Missense_Mutation p.V277D 0.42 deleterious_low_confidence(0) possibly_damaging(0.648) TCGA-CC-A5UE-01 15 24921322 24921322 G A NPAP1 Missense_Mutation p.R103Q 0.45 tolerated(0.06) possibly_damaging(0.895) TCGA-CC-A5UE-01 15 28518063 28518063 C A HERC2 Silent p.L296L 0.45 TCGA-CC-A5UE-01 15 28902405 28902405 G T HERC2P9 RNA 0.23 TCGA-CC-A5UE-01 15 37184488 37184488 C A MEIS2 Missense_Mutation p.M440I 0.41 deleterious_low_confidence(0.05) benign(0.009) TCGA-CC-A5UE-01 15 41763423 41763423 A G RTF1 Missense_Mutation p.N360S 0.20 tolerated(0.33) benign(0.123) TCGA-CC-A5UE-01 15 43819203 43819203 C T MAP1A Silent p.P1844P 0.11 TCGA-CC-A5UE-01 15 45411339 45411339 C T DUOXA1 Intron 0.26 TCGA-CC-A5UE-01 15 48829964 48829964 T A FBN1 Missense_Mutation p.M194L 0.27 benign(0.055) TCGA-CC-A5UE-01 16 348096 348097 - A AXIN1 Frame_Shift_Ins p.L471Pfs*120 0.45 TCGA-CC-A5UE-01 16 87364936 87364936 G A FBXO31 Silent p.A526A 0.78 TCGA-CC-A5UE-01 16 87677929 87677929 T C JPH3 Missense_Mutation p.Y150H 0.71 deleterious(0.01) possibly_damaging(0.612) TCGA-CC-A5UE-01 16 89986651 89986651 G T MC1R 3'UTR 0.71 TCGA-CC-A5UE-01 17 30616004 30616004 C T RHBDL3 Missense_Mutation p.P163L 0.44 deleterious(0) probably_damaging(0.999) TCGA-CC-A5UE-01 17 40174597 40174597 A G NKIRAS2 Missense_Mutation p.E92G 0.51 deleterious(0.01) possibly_damaging(0.673) TCGA-CC-A5UE-01 17 43861914 43861914 G T CRHR1 Nonsense_Mutation p.G2* 0.48 TCGA-CC-A5UE-01 17 48149396 48149396 G T ITGA3 Nonsense_Mutation p.E336* 0.45 TCGA-CC-A5UE-01 17 56358134 56358134 G T MPO 5'UTR 0.70 TCGA-CC-A5UE-01 17 60024306 60024306 C G MED13 Missense_Mutation p.D2122H 0.16 deleterious(0) probably_damaging(0.998) TCGA-CC-A5UE-01 17 72916210 72916210 C A USH1G Missense_Mutation p.A241S 0.81 tolerated(0.18) benign(0.007) TCGA-CC-A5UE-01 17 7577534 7577534 C A TP53 Missense_Mutation p.R249S 0.80 deleterious(0) probably_damaging(0.994) TCGA-CC-A5UE-01 17 79988573 79988573 G C LRRC45 Missense_Mutation p.E635D 0.68 tolerated(0.14) benign(0.036) TCGA-CC-A5UE-01 17 8390877 8390877 C T MYH10 Silent p.R1640R 0.70 TCGA-CC-A5UE-01 18 50923774 50923774 A T DCC Missense_Mutation p.S929C 0.25 deleterious(0) probably_damaging(1) TCGA-CC-A5UE-01 19 11096863 11096863 A T SMARCA4 Splice_Site p.X119_splice 0.74 TCGA-CC-A5UE-01 19 1395360 1395360 G A NDUFS7 Intron 0.80 TCGA-CC-A5UE-01 19 22939139 22939139 G A ZNF99 3'Flank 0.45 TCGA-CC-A5UE-01 19 40872522 40872522 G T PLD3 Missense_Mutation p.K11N 0.56 tolerated_low_confidence(0.11) probably_damaging(0.986) TCGA-CC-A5UE-01 19 44116304 44116304 A G SRRM5 Missense_Mutation p.S11G 0.34 tolerated(0.94) benign(0.294) TCGA-CC-A5UE-01 19 44571032 44571032 A G ZNF223 Missense_Mutation p.K351E 0.38 deleterious(0) probably_damaging(0.998) TCGA-CC-A5UE-01 19 46021343 46021343 G T VASP Missense_Mutation p.A112S 0.37 deleterious(0) unknown(0) TCGA-CC-A5UE-01 19 46543134 46543134 G A IGFL4 3'UTR 0.45 TCGA-CC-A5UE-01 19 52714742 52714742 G A PPP2R1A Missense_Mutation p.R167Q 0.37 deleterious(0.02) probably_damaging(0.993) TCGA-CC-A5UE-01 19 52941617 52941617 G T ZNF534 Nonsense_Mutation p.E315* 0.30 TCGA-CC-A5UE-01 1 103478004 103478004 C G COL11A1 Missense_Mutation p.G532R 0.73 probably_damaging(1) TCGA-CC-A5UE-01 1 145359172 145359172 G T NBPF10 Missense_Mutation p.A3038S 0.28 possibly_damaging(0.745) TCGA-CC-A5UE-01 1 17331929 17331929 C A ATP13A2 Silent p.R76R 0.18 TCGA-CC-A5UE-01 1 177934193 177934193 C T SEC16B Silent p.E174E 0.74 TCGA-CC-A5UE-01 1 196946711 196946711 T G CFHR5 5'UTR 0.13 TCGA-CC-A5UE-01 1 203097959 203097959 C T ADORA1 5'UTR 0.77 TCGA-CC-A5UE-01 1 237850763 237850763 G T RYR2 Missense_Mutation p.C3009F 0.13 probably_damaging(0.959) TCGA-CC-A5UE-01 1 243437866 243437866 A G SDCCAG8 Missense_Mutation p.T110A 0.14 tolerated(0.86) benign(0.012) TCGA-CC-A5UE-01 1 248813752 248813752 A G OR2T27 Missense_Mutation p.V145A 0.56 tolerated(0.63) benign(0.02) TCGA-CC-A5UE-01 1 31208055 31208055 C A LAPTM5 Missense_Mutation p.V222L 0.13 tolerated(0.28) benign(0.007) TCGA-CC-A5UE-01 1 32741654 32741654 C A LCK Silent p.R207R 0.74 TCGA-CC-A5UE-01 1 32741655 32741655 C A LCK Missense_Mutation p.H208N 0.74 deleterious(0.01) possibly_damaging(0.811) TCGA-CC-A5UE-01 1 45469577 45469577 C T HECTD3 Silent p.T793T 0.28 TCGA-CC-A5UE-01 20 2463696 2463696 C A ZNF343 3'UTR 0.47 TCGA-CC-A5UE-01 20 35437004 35437004 A G SOGA1 Missense_Mutation p.F909S 0.40 deleterious(0.01) probably_damaging(0.964) TCGA-CC-A5UE-01 20 3914660 3914660 T A RNF24 3'UTR 0.44 TCGA-CC-A5UE-01 20 44403077 44403077 G A WFDC3 Missense_Mutation p.P229L 0.21 tolerated_low_confidence(0.1) benign(0.003) TCGA-CC-A5UE-01 20 47342858 47342858 T A PREX1 Missense_Mutation p.Q197L 0.47 deleterious(0) probably_damaging(0.999) TCGA-CC-A5UE-01 20 51872915 51872915 G T TSHZ2 Missense_Mutation p.R973L 0.33 deleterious(0.01) possibly_damaging(0.843) TCGA-CC-A5UE-01 20 57288476 57288476 G A NPEPL1 Silent p.K334K 0.42 TCGA-CC-A5UE-01 21 28217002 28217002 G T ADAMTS1 Missense_Mutation p.P91H 0.25 deleterious(0) probably_damaging(0.909) TCGA-CC-A5UE-01 21 34100328 34100328 C A SYNJ1 Missense_Mutation p.W8C 0.89 deleterious_low_confidence(0) benign(0) TCGA-CC-A5UE-01 21 45553548 45553548 C T C21orf33 5'UTR 0.33 TCGA-CC-A5UE-01 21 47952072 47952072 G T DIP2A Silent p.V409V 0.61 TCGA-CC-A5UE-01 22 29886676 29886676 C A NEFH Missense_Mutation p.A1016D 0.61 deleterious_low_confidence(0) unknown(0) TCGA-CC-A5UE-01 22 37964608 37964608 G T CDC42EP1 Missense_Mutation p.R319S 0.38 deleterious(0.02) unknown(0) TCGA-CC-A5UE-01 22 38823369 38823377 ACACCAGGA - KCNJ4 In_Frame_Del p.F254_V256del 0.21 TCGA-CC-A5UE-01 22 46932253 46932253 G T CELSR1 Missense_Mutation p.T272N 0.54 deleterious(0.01) benign(0.281) TCGA-CC-A5UE-01 2 105886085 105886085 G A TGFBRAP1 Missense_Mutation p.H684Y 0.39 deleterious(0.02) benign(0.317) TCGA-CC-A5UE-01 2 109369518 109369519 AG T RANBP2 Frame_Shift_Del p.K607Ifs*7 0.13 TCGA-CC-A5UE-01 2 130832599 130832599 G A POTEF Missense_Mutation p.R816C 0.51 deleterious_low_confidence(0) probably_damaging(0.944) TCGA-CC-A5UE-01 2 136579639 136579639 C T LCT Missense_Mutation p.G313R 0.22 deleterious(0) probably_damaging(0.983) TCGA-CC-A5UE-01 2 137988760 137988760 G A THSD7B Missense_Mutation p.G624R 0.33 deleterious(0) probably_damaging(0.991) TCGA-CC-A5UE-01 2 179463972 179463972 G A TTN Silent p.L18850L 0.46 TCGA-CC-A5UE-01 2 179665290 179665290 G T TTN Silent p.R139R 0.39 TCGA-CC-A5UE-01 2 192273885 192273885 G C MYO1B Missense_Mutation p.R916T 0.48 tolerated(0.22) benign(0.423) TCGA-CC-A5UE-01 2 204732726 204732726 C A CTLA4 Missense_Mutation p.P21T 0.42 deleterious_low_confidence(0.02) benign(0.283) TCGA-CC-A5UE-01 2 205829899 205829899 G A PARD3B Missense_Mutation p.E83K 0.21 tolerated(0.12) benign(0.167) TCGA-CC-A5UE-01 2 209141531 209141531 G C PIKFYVE Missense_Mutation p.E140Q 0.51 tolerated(0.06) probably_damaging(0.939) TCGA-CC-A5UE-01 2 216946462 216946462 C A PECR Translation_Start_Site p.M1? 0.55 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-CC-A5UE-01 2 220500114 220500114 G T SLC4A3 Missense_Mutation p.R650L 0.46 tolerated(0.26) possibly_damaging(0.712) TCGA-CC-A5UE-01 2 234638229 234638229 C T UGT1A3 Missense_Mutation p.P153S 0.15 deleterious(0.02) probably_damaging(0.992) TCGA-CC-A5UE-01 2 239054430 239054430 C A KLHL30 Missense_Mutation p.N369K 0.32 tolerated(0.09) possibly_damaging(0.895) TCGA-CC-A5UE-01 2 27741789 27741789 G T GCKR Silent p.A519A 0.34 TCGA-CC-A5UE-01 2 32289161 32289161 G A SPAST Missense_Mutation p.M87I 0.37 tolerated(0.46) possibly_damaging(0.519) TCGA-CC-A5UE-01 2 33585803 33585803 G T LTBP1 Missense_Mutation p.W1380C 0.31 deleterious(0) probably_damaging(0.996) TCGA-CC-A5UE-01 2 37349804 37349804 C A EIF2AK2 Missense_Mutation p.K304N 0.55 deleterious(0) probably_damaging(0.947) TCGA-CC-A5UE-01 2 39222434 39222434 T C SOS1 Missense_Mutation p.E1059G 0.52 tolerated(0.06) probably_damaging(0.947) TCGA-CC-A5UE-01 2 50463974 50463974 G T NRXN1 Silent p.R1207R 0.43 TCGA-CC-A5UE-01 2 56144961 56144961 A G EFEMP1 Missense_Mutation p.V119A 0.44 tolerated(0.68) benign(0.022) TCGA-CC-A5UE-01 2 96798324 96798324 C A ASTL Missense_Mutation p.D198Y 0.49 deleterious(0) probably_damaging(1) TCGA-CC-A5UE-01 3 11303588 11303588 A T HRH1 3'UTR 0.38 TCGA-CC-A5UE-01 3 132378583 132378583 C A ACAD11 Missense_Mutation p.A5S 0.45 deleterious(0.02) benign(0.024) TCGA-CC-A5UE-01 3 154146874 154146874 G A GPR149 Silent p.R177R 0.55 TCGA-CC-A5UE-01 3 197562626 197562626 G A LRCH3 Missense_Mutation p.G395E 0.35 tolerated(0.22) benign(0.255) TCGA-CC-A5UE-01 3 27346421 27346421 T A NEK10 Missense_Mutation p.Q282L 0.38 tolerated(0.09) benign(0.005) TCGA-CC-A5UE-01 3 46784019 46784019 C T PRSS45 Missense_Mutation p.G170R 0.44 deleterious(0) probably_damaging(1) TCGA-CC-A5UE-01 3 55717878 55717878 C G ERC2 Missense_Mutation p.E953Q 0.30 deleterious(0.01) possibly_damaging(0.672) TCGA-CC-A5UE-01 3 69167886 69167886 G T LMOD3 Missense_Mutation p.N540K 0.33 tolerated(0.07) benign(0.442) TCGA-CC-A5UE-01 4 140187811 140187811 C A MGARP Missense_Mutation p.G222V 0.71 deleterious(0.02) possibly_damaging(0.795) TCGA-CC-A5UE-01 4 155505651 155505651 G C FGA Missense_Mutation p.F742L 0.75 tolerated(1) benign(0.106) TCGA-CC-A5UE-01 4 169305825 169305825 G C DDX60L Missense_Mutation p.L1352V 0.49 deleterious(0.02) possibly_damaging(0.762) TCGA-CC-A5UE-01 4 38798659 38798659 G A TLR1 Silent p.T598T 0.57 TCGA-CC-A5UE-01 4 74272392 74272393 - ATCA ALB Frame_Shift_Ins p.H63Qfs*8 0.68 TCGA-CC-A5UE-01 5 141337154 141337154 G C PCDH12 Missense_Mutation p.T88R 0.51 deleterious(0) probably_damaging(0.997) TCGA-CC-A5UE-01 5 14601219 14601219 G T FAM105A Silent p.G70G 0.45 TCGA-CC-A5UE-01 5 156476055 156476055 T A HAVCR1 Missense_Mutation p.T259S 0.40 tolerated(0.85) possibly_damaging(0.801) TCGA-CC-A5UE-01 5 169230139 169230139 C A DOCK2 Missense_Mutation p.Q878K 0.43 tolerated(1) benign(0.037) TCGA-CC-A5UE-01 5 172342858 172342858 A T ERGIC1 Intron 0.44 TCGA-CC-A5UE-01 5 179043937 179043937 G T HNRNPH1 Missense_Mutation p.F380L 0.43 tolerated_low_confidence(0.23) benign(0.004) TCGA-CC-A5UE-01 5 180630748 180630748 G A TRIM7 Intron 0.50 TCGA-CC-A5UE-01 5 36136503 36136503 T A LMBRD2 Missense_Mutation p.R219W 0.40 deleterious(0.03) benign(0.427) TCGA-CC-A5UE-01 5 5461287 5461287 G A KIAA0947 Missense_Mutation p.D614N 0.50 tolerated(0.39) benign(0.022) TCGA-CC-A5UE-01 5 60188264 60188264 A C ERCC8 Intron 0.49 TCGA-CC-A5UE-01 5 9066573 9066573 C T SEMA5A Silent p.R753R 0.31 TCGA-CC-A5UE-01 6 121767988 121767988 G T GJA1 5'UTR 0.48 TCGA-CC-A5UE-01 6 16327490 16327490 G A ATXN1 Missense_Mutation p.S351L 0.08 tolerated(0.21) benign(0.013) TCGA-CC-A5UE-01 6 51920438 51920438 C A PKHD1 Missense_Mutation p.V595F 0.29 deleterious(0) possibly_damaging(0.729) TCGA-CC-A5UE-01 6 84799248 84799248 T C MRAP2 3'UTR 0.49 TCGA-CC-A5UE-01 7 100174773 100174773 A G LRCH4 Silent p.L434L 0.28 TCGA-CC-A5UE-01 7 117351762 117351762 T A CTTNBP2 Silent p.S1607S 0.53 TCGA-CC-A5UE-01 7 122303420 122303420 T C CADPS2 Silent p.K219K 0.62 TCGA-CC-A5UE-01 7 127721412 127721412 G C SND1 Missense_Mutation p.V657L 0.59 tolerated(0.4) benign(0.004) TCGA-CC-A5UE-01 7 128133954 128133954 A G METTL2B Missense_Mutation p.I256V 0.64 tolerated(1) benign(0.012) TCGA-CC-A5UE-01 7 139285298 139285298 T A HIPK2 Missense_Mutation p.Q767L 0.52 deleterious(0) possibly_damaging(0.459) TCGA-CC-A5UE-01 7 139655333 139655333 T A TBXAS1 Silent p.P252P 0.17 TCGA-CC-A5UE-01 7 30721587 30721587 G T CRHR2 Missense_Mutation p.A85D 0.18 tolerated(0.39) benign(0.287) TCGA-CC-A5UE-01 7 31378831 31378831 A T NEUROD6 Missense_Mutation p.C18S 0.64 tolerated(0.43) possibly_damaging(0.587) TCGA-CC-A5UE-01 7 42949411 42949411 C T C7orf25 Silent p.G421G 0.60 TCGA-CC-A5UE-01 7 62752706 62752706 G A ZNF733P RNA 0.40 TCGA-CC-A5UE-01 7 6620253 6620253 A G ZDHHC4 Missense_Mutation p.I21V 0.53 tolerated(0.99) benign(0.004) TCGA-CC-A5UE-01 7 6777161 6777161 G T PMS2CL RNA 0.32 TCGA-CC-A5UE-01 8 103842142 103842142 T A AZIN1 Missense_Mutation p.E309D 0.69 tolerated(0.44) benign(0.002) TCGA-CC-A5UE-01 8 15397946 15397946 G T TUSC3 Missense_Mutation p.A3S 0.44 deleterious_low_confidence(0) unknown(0) TCGA-CC-A5UE-01 8 27328628 27328628 C T CHRNA2 5'UTR 0.12 TCGA-CC-A5UE-01 8 27779611 27779611 C A SCARA5 Silent p.A131A 0.38 TCGA-CC-A5UE-01 8 37693183 37693183 C A GPR124 Silent p.R649R 0.30 TCGA-CC-A5UE-01 8 53477863 53477863 A T FAM150A 5'UTR 0.14 TCGA-CC-A5UE-01 8 56015754 56015754 G T XKR4 Missense_Mutation p.A236S 0.44 tolerated(0.55) benign(0.002) TCGA-CC-A5UE-01 8 96167733 96167733 T C PLEKHF2 3'UTR 0.25 TCGA-CC-A5UE-01 9 101798606 101798607 - T COL15A1 Frame_Shift_Ins p.M780Yfs*24 0.09 TCGA-CC-A5UE-01 9 114332480 114332480 G - PTGR1 Frame_Shift_Del p.P257Qfs*28 0.15 TCGA-CC-A5UE-01 9 115812084 115812084 G T ZFP37 Missense_Mutation p.N67K 0.58 deleterious(0.01) benign(0.287) TCGA-CC-A5UE-01 9 125391806 125391806 G A OR1B1 Silent p.S3S 0.43 TCGA-CC-A5UE-01 9 135117276 135117276 C A NTNG2 Missense_Mutation p.D457E 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-CC-A5UE-01 9 139244159 139244159 G C GPSM1 Missense_Mutation p.E467Q 0.22 tolerated(0.37) benign(0.006) TCGA-CC-A5UE-01 9 140093451 140093451 G A TPRN Silent p.S571S 0.19 TCGA-CC-A5UE-01 9 73736204 73736204 A T TRPM3 Missense_Mutation p.W23R 0.53 tolerated_low_confidence(0.86) benign(0.018) TCGA-CC-A5UE-01 9 77567361 77567361 C T C9orf40 Missense_Mutation p.R56H 0.15 deleterious(0) probably_damaging(0.923) TCGA-CC-A5UE-01 X 111698140 111698140 A T ZCCHC16 Missense_Mutation p.T62S 0.44 tolerated(1) benign(0.003) TCGA-CC-A5UE-01 X 132159790 132159790 C A USP26 Missense_Mutation p.G820V 0.21 tolerated(0.25) possibly_damaging(0.53) TCGA-CC-A5UE-01 X 148665000 148665000 G T MAGEA9B 5'UTR 0.60 TCGA-CC-A5UE-01 X 34148006 34148006 A G FAM47A 3'UTR 0.08 TCGA-CC-A5UE-01 X 70674056 70674056 T C TAF1 Missense_Mutation p.I1617T 0.86 deleterious(0.02) probably_damaging(0.934) TCGA-CC-A5UE-01 X 79700160 79700160 A G FAM46D 3'UTR 0.86 TCGA-CC-A5UE-01 Y 14951877 14951877 G T USP9Y Nonsense_Mutation p.E1809* 0.77 TCGA-CC-A7IE-01 10 100189264 100189264 G T HPS1 Intron 0.08 TCGA-CC-A7IE-01 10 102267799 102267799 C T SEC31B Missense_Mutation p.E169K 0.27 deleterious(0) possibly_damaging(0.759) TCGA-CC-A7IE-01 10 125557598 125557598 C A CPXM2 Missense_Mutation p.E261D 0.16 tolerated(0.32) possibly_damaging(0.676) TCGA-CC-A7IE-01 10 16562897 16562897 G A C1QL3 Silent p.P56P 0.19 TCGA-CC-A7IE-01 10 48416588 48416588 T C GDF2 Missense_Mutation p.N36D 0.27 tolerated(1) benign(0.001) TCGA-CC-A7IE-01 10 70967559 70967559 A G SUPV3L1 Missense_Mutation p.Q596R 0.15 tolerated(0.4) benign(0.008) TCGA-CC-A7IE-01 10 71902607 71902607 C T TYSND1 Missense_Mutation p.E434K 0.10 tolerated(0.12) possibly_damaging(0.795) TCGA-CC-A7IE-01 10 72518013 72518013 C G ADAMTS14 Silent p.P1053P 0.17 TCGA-CC-A7IE-01 10 8051256 8051256 T A TAF3 Missense_Mutation p.V844E 0.16 deleterious(0) benign(0) TCGA-CC-A7IE-01 10 82098285 82098285 C T DYDC1 Missense_Mutation p.D148N 0.30 deleterious(0.02) benign(0.084) TCGA-CC-A7IE-01 10 88635674 88635674 C G BMPR1A 5'UTR 0.28 TCGA-CC-A7IE-01 10 89472858 89472858 A G PAPSS2 Missense_Mutation p.I58V 0.34 tolerated(0.38) benign(0.007) TCGA-CC-A7IE-01 10 96084326 96084326 T C PLCE1 Splice_Site p.X2240_splice 0.36 TCGA-CC-A7IE-01 11 100803985 100803985 G T ARHGAP42 Missense_Mutation p.L232F 0.32 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IE-01 11 111657080 111657080 A G ALG9 3'UTR 0.23 TCGA-CC-A7IE-01 11 111657084 111657084 A G ALG9 3'UTR 0.24 TCGA-CC-A7IE-01 11 119031060 119031060 G C ABCG4 Missense_Mutation p.G521R 0.24 deleterious(0) probably_damaging(0.986) TCGA-CC-A7IE-01 11 119228005 119228005 T C USP2 Missense_Mutation p.Y541C 0.32 deleterious(0) probably_damaging(1) TCGA-CC-A7IE-01 11 20652251 20652251 T C SLC6A5 Missense_Mutation p.V505A 0.30 deleterious(0) probably_damaging(0.989) TCGA-CC-A7IE-01 11 55873358 55873358 T G OR8H2 Missense_Mutation p.I280M 0.31 tolerated(0.26) benign(0.256) TCGA-CC-A7IE-01 11 68660463 68660463 T C MRPL21 Splice_Site p.X150_splice 0.26 TCGA-CC-A7IE-01 11 72353416 72353416 A T PDE2A Intron 0.29 TCGA-CC-A7IE-01 11 88386445 88386445 T C GRM5 Silent p.P346P 0.28 TCGA-CC-A7IE-01 11 92495256 92495256 G T FAT3 Nonsense_Mutation p.G1302* 0.26 TCGA-CC-A7IE-01 12 119594393 119594393 C A SRRM4 Missense_Mutation p.S542R 0.31 deleterious_low_confidence(0) unknown(0) TCGA-CC-A7IE-01 12 120899625 120899625 A C SRSF9 3'UTR 0.26 TCGA-CC-A7IE-01 12 12356291 12356291 G A LRP6 Missense_Mutation p.R165C 0.24 deleterious(0) possibly_damaging(0.537) TCGA-CC-A7IE-01 12 124914165 124914166 CT - NCOR2 Frame_Shift_Del p.E381Afs*22 0.16 TCGA-CC-A7IE-01 12 18242263 18242263 G T RERGL 5'UTR 0.07 TCGA-CC-A7IE-01 12 32899995 32899995 A G YARS2 3'UTR 0.33 TCGA-CC-A7IE-01 12 33031964 33031964 T G PKP2 Missense_Mutation p.N76H 0.26 deleterious(0.04) possibly_damaging(0.77) TCGA-CC-A7IE-01 12 46230676 46230676 A T ARID2 Missense_Mutation p.N309Y 0.37 deleterious(0) probably_damaging(0.986) TCGA-CC-A7IE-01 12 46254582 46254582 A G ARID2 Splice_Site p.X1592_splice 0.36 TCGA-CC-A7IE-01 12 48744062 48744062 A G ZNF641 5'UTR 0.29 TCGA-CC-A7IE-01 12 52374885 52374885 C A ACVR1B Missense_Mutation p.S238Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IE-01 12 55420925 55420925 A C NEUROD4 Missense_Mutation p.E234D 0.25 tolerated(0.41) benign(0.003) TCGA-CC-A7IE-01 12 70078068 70078068 T A BEST3 Intron 0.33 TCGA-CC-A7IE-01 12 72004119 72004120 - TAAG ZFC3H1 3'UTR 0.26 TCGA-CC-A7IE-01 12 86373990 86373990 T C MGAT4C Missense_Mutation p.I172V 0.27 tolerated(0.06) possibly_damaging(0.669) TCGA-CC-A7IE-01 12 94976245 94976245 G C TMCC3 Missense_Mutation p.L50V 0.21 tolerated(0.19) probably_damaging(0.99) TCGA-CC-A7IE-01 13 103346790 103346790 G C METTL21C Missense_Mutation p.S20C 0.41 tolerated_low_confidence(0.13) benign(0.001) TCGA-CC-A7IE-01 13 20399130 20399130 T C ZMYM5 Silent p.T499T 0.25 TCGA-CC-A7IE-01 13 21752065 21752065 C T MRP63 3'UTR 0.07 TCGA-CC-A7IE-01 13 37016951 37016951 T C CCNA1 3'UTR 0.20 TCGA-CC-A7IE-01 13 39266309 39266309 G C FREM2 Missense_Mutation p.E1610Q 0.28 tolerated(0.08) benign(0.253) TCGA-CC-A7IE-01 13 49742771 49742771 A G FNDC3A Missense_Mutation p.I354V 0.31 tolerated(1) benign(0) TCGA-CC-A7IE-01 13 50590444 50590444 A - TRIM13 3'Flank 0.22 TCGA-CC-A7IE-01 13 77642923 77642923 C G MYCBP2 Missense_Mutation p.R3945T 0.34 probably_damaging(0.961) TCGA-CC-A7IE-01 13 77743838 77743838 G C MYCBP2 Missense_Mutation p.P1898A 0.31 possibly_damaging(0.823) TCGA-CC-A7IE-01 13 95363935 95363935 G A SOX21 Silent p.G123G 0.05 TCGA-CC-A7IE-01 13 98674163 98674163 A G IPO5 3'UTR 0.30 TCGA-CC-A7IE-01 14 105414699 105414699 G A AHNAK2 Silent p.T2363T 0.16 TCGA-CC-A7IE-01 14 105965392 105965392 G A C14orf80 3'UTR 0.33 TCGA-CC-A7IE-01 14 23072409 23072410 - T ABHD4 Frame_Shift_Ins p.G78Wfs*44 0.21 TCGA-CC-A7IE-01 14 23815904 23815904 G C SLC22A17 Missense_Mutation p.R524G 0.56 deleterious(0.01) possibly_damaging(0.819) TCGA-CC-A7IE-01 14 23884288 23884288 C T MYH7 Silent p.E1825E 0.34 TCGA-CC-A7IE-01 14 24566238 24566238 A T PCK2 Missense_Mutation p.Q56L 0.17 deleterious(0.01) benign(0.436) TCGA-CC-A7IE-01 14 24906470 24906470 C G KHNYN Silent p.A672A 0.10 TCGA-CC-A7IE-01 14 45584061 45584061 A G PRPF39 Missense_Mutation p.Y652C 0.19 deleterious(0.01) benign(0.039) TCGA-CC-A7IE-01 14 45584078 45584078 T G PRPF39 Missense_Mutation p.W658G 0.19 deleterious(0.01) benign(0) TCGA-CC-A7IE-01 14 50904667 50904668 - T MAP4K5 Frame_Shift_Ins p.P590Tfs*29 0.11 TCGA-CC-A7IE-01 14 70171412 70171413 GC T KIAA0247 Frame_Shift_Del p.L138Cfs*9 0.25 TCGA-CC-A7IE-01 14 78183961 78183961 T G SNW1 3'UTR 0.11 TCGA-CC-A7IE-01 15 29415840 29415840 G T FAM189A1 Missense_Mutation p.A441D 0.10 tolerated(0.15) possibly_damaging(0.908) TCGA-CC-A7IE-01 15 33926872 33926872 G T RYR3 Missense_Mutation p.R1038L 0.30 possibly_damaging(0.618) TCGA-CC-A7IE-01 15 40241361 40241361 C A EIF2AK4 Missense_Mutation p.S135R 0.21 tolerated(0.26) benign(0.354) TCGA-CC-A7IE-01 15 41059562 41059562 T C GCHFR 3'UTR 0.31 TCGA-CC-A7IE-01 15 57732594 57732594 A G CGNL1 Missense_Mutation p.K541R 0.31 tolerated(0.06) probably_damaging(0.925) TCGA-CC-A7IE-01 15 71175114 71175114 C T THAP10 Missense_Mutation p.R188H 0.16 tolerated(0.35) benign(0.001) TCGA-CC-A7IE-01 15 94945187 94945187 T A MCTP2 Missense_Mutation p.M675K 0.19 deleterious(0.02) benign(0.001) TCGA-CC-A7IE-01 15 99467196 99467196 T A IGF1R Missense_Mutation p.N859K 0.20 deleterious(0) probably_damaging(1) TCGA-CC-A7IE-01 16 20344628 20344628 G A UMOD 3'UTR 0.41 TCGA-CC-A7IE-01 16 21080830 21080830 A G DNAH3 Missense_Mutation p.I1096T 0.39 deleterious(0) probably_damaging(1) TCGA-CC-A7IE-01 16 2149932 2149932 C T PKD1 Missense_Mutation p.V3285I 0.42 benign(0.004) TCGA-CC-A7IE-01 16 28146641 28146641 C A XPO6 Nonsense_Mutation p.E447* 0.30 TCGA-CC-A7IE-01 16 30749946 30749946 G T SRCAP Missense_Mutation p.R2862M 0.19 unknown(0) TCGA-CC-A7IE-01 16 30749947 30749947 G T SRCAP Missense_Mutation p.R2862S 0.19 unknown(0) TCGA-CC-A7IE-01 16 3367850 3367850 A T ZNF75A Missense_Mutation p.H291L 0.41 deleterious(0) probably_damaging(0.998) TCGA-CC-A7IE-01 16 70301705 70301705 G A AARS Missense_Mutation p.A360V 0.18 tolerated(0.68) possibly_damaging(0.832) TCGA-CC-A7IE-01 16 84229451 84229451 G A ADAD2 Silent p.P443P 0.33 TCGA-CC-A7IE-01 16 89965023 89965023 C T TCF25 Missense_Mutation p.R361C 0.47 deleterious(0) probably_damaging(1) TCGA-CC-A7IE-01 17 10323447 10323447 G A MYH8 Missense_Mutation p.P33L 0.30 deleterious(0.03) probably_damaging(0.928) TCGA-CC-A7IE-01 17 15976836 15976836 C A NCOR1 Nonsense_Mutation p.E1240* 0.29 TCGA-CC-A7IE-01 17 16667283 16667283 A G CCDC144A Missense_Mutation p.N1298D 0.30 tolerated(0.1) possibly_damaging(0.874) TCGA-CC-A7IE-01 17 18602751 18602751 T C TRIM16L Intron 0.35 TCGA-CC-A7IE-01 17 18862513 18862513 C A SLC5A10 Silent p.G83G 0.28 TCGA-CC-A7IE-01 17 18872377 18872377 G A SLC5A10 Missense_Mutation p.A156T 0.24 deleterious(0) possibly_damaging(0.626) TCGA-CC-A7IE-01 17 18874616 18874616 C A FAM83G 3'UTR 0.29 TCGA-CC-A7IE-01 17 26096596 26096596 C T NOS2 Silent p.S608S 0.30 TCGA-CC-A7IE-01 17 26715488 26715488 T G SARM1 Missense_Mutation p.V584G 0.32 deleterious(0) possibly_damaging(0.675) TCGA-CC-A7IE-01 17 33690013 33690013 T C SLFN11 Missense_Mutation p.R272G 0.27 tolerated(0.3) benign(0.002) TCGA-CC-A7IE-01 17 38975326 38975326 G T KRT10 Missense_Mutation p.H487Q 0.33 tolerated_low_confidence(0.6) unknown(0) TCGA-CC-A7IE-01 17 39553799 39553799 G T KRT31 5'UTR 0.24 TCGA-CC-A7IE-01 17 42086093 42086093 A G NAGS 3'UTR 0.14 TCGA-CC-A7IE-01 17 44594571 44594571 G A LRRC37A2 Intron 0.28 TCGA-CC-A7IE-01 17 74922720 74922720 C T MGAT5B Missense_Mutation p.A411V 0.17 tolerated(0.05) probably_damaging(0.999) TCGA-CC-A7IE-01 17 76497896 76497896 C T DNAH17 Silent p.R1739R 0.23 TCGA-CC-A7IE-01 17 9873040 9873040 G T GAS7 Missense_Mutation p.P142Q 0.26 tolerated(0.35) benign(0.193) TCGA-CC-A7IE-01 18 40554066 40554066 G A RIT2 Silent p.Y69Y 0.34 TCGA-CC-A7IE-01 18 43532421 43532421 T C EPG5 Silent p.A399A 0.31 TCGA-CC-A7IE-01 19 33693781 33693781 A G LRP3 Missense_Mutation p.H50R 0.35 deleterious(0.03) possibly_damaging(0.82) TCGA-CC-A7IE-01 19 35863041 35863041 C T GPR42 Silent p.Y260Y 0.17 TCGA-CC-A7IE-01 19 4366971 4366971 T A SH3GL1 Silent p.G22G 0.13 TCGA-CC-A7IE-01 19 45315505 45315505 G T BCAM Missense_Mutation p.G97V 0.36 deleterious(0.01) possibly_damaging(0.7) TCGA-CC-A7IE-01 19 48281868 48281868 G C SEPW1 5'UTR 0.31 TCGA-CC-A7IE-01 19 49925671 49925671 C T PTH2 3'UTR 0.38 TCGA-CC-A7IE-01 19 50027980 50027980 A G FCGRT Missense_Mutation p.Y273C 0.29 deleterious(0) probably_damaging(1) TCGA-CC-A7IE-01 19 58983623 58983623 G T ZNF324 3'UTR 0.19 TCGA-CC-A7IE-01 19 8429440 8429440 G A ANGPTL4 Missense_Mutation p.A79T 0.35 tolerated(0.29) benign(0.017) TCGA-CC-A7IE-01 1 111861237 111861237 C T CHIA Silent p.P284P 0.18 TCGA-CC-A7IE-01 1 152671729 152671729 A G LCE2A 3'UTR 0.14 TCGA-CC-A7IE-01 1 158532474 158532474 G A OR6P1 Silent p.G307G 0.42 TCGA-CC-A7IE-01 1 158583532 158583532 A T SPTA1 Missense_Mutation p.L2323Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IE-01 1 158609400 158609400 A T SPTA1 Missense_Mutation p.L1651Q 0.09 deleterious(0) probably_damaging(1) TCGA-CC-A7IE-01 1 158650442 158650442 G A SPTA1 Silent p.F203F 0.25 TCGA-CC-A7IE-01 1 159683929 159683929 C A CRP Splice_Site p.X21_splice 0.19 TCGA-CC-A7IE-01 1 162336963 162336963 T C RP11-565P22.6 Silent p.A95A 0.11 TCGA-CC-A7IE-01 1 166991317 166991317 T C MAEL 3'UTR 0.21 TCGA-CC-A7IE-01 1 17273389 17273389 G T CROCC Missense_Mutation p.G806V 0.18 probably_damaging(0.947) TCGA-CC-A7IE-01 1 181058762 181058762 C T IER5 Missense_Mutation p.P242S 0.20 tolerated(0.06) probably_damaging(0.989) TCGA-CC-A7IE-01 1 181479649 181479649 C A CACNA1E Silent p.A101A 0.19 TCGA-CC-A7IE-01 1 207647159 207647159 T A CR2 Missense_Mutation p.H723Q 0.13 tolerated(0.32) benign(0.06) TCGA-CC-A7IE-01 1 22149750 22149750 A G LDLRAD2 3'UTR 0.45 TCGA-CC-A7IE-01 1 39800305 39800305 A T MACF1 Intron 0.45 TCGA-CC-A7IE-01 1 47395841 47395841 G T CYP4A11 Silent p.I502I 0.39 TCGA-CC-A7IE-01 1 49242343 49242343 G T BEND5 Missense_Mutation p.P54H 0.16 deleterious_low_confidence(0.01) benign(0.03) TCGA-CC-A7IE-01 1 54506502 54506502 T C TMEM59 Missense_Mutation p.M212V 0.17 tolerated(0.31) benign(0.057) TCGA-CC-A7IE-01 1 74507591 74507591 C G LRRIQ3 Missense_Mutation p.D342H 0.14 deleterious(0.01) possibly_damaging(0.833) TCGA-CC-A7IE-01 1 74737339 74737339 G T FPGT-TNNI3K Nonsense_Mutation p.G245* 0.11 TCGA-CC-A7IE-01 1 77510159 77510159 C T ST6GALNAC5 Missense_Mutation p.R178W 0.26 probably_damaging(1) TCGA-CC-A7IE-01 1 92648122 92648122 A T KIAA1107 Missense_Mutation p.T1190S 0.16 tolerated(0.26) benign(0.093) TCGA-CC-A7IE-01 20 16025252 16025252 C A MACROD2 Intron 0.23 TCGA-CC-A7IE-01 20 3027362 3027362 G C MRPS26 Missense_Mutation p.E154D 0.39 deleterious(0.01) probably_damaging(0.973) TCGA-CC-A7IE-01 20 34241608 34241608 G T RBM12 Missense_Mutation p.A546D 0.22 deleterious(0.01) probably_damaging(1) TCGA-CC-A7IE-01 20 49576802 49576802 A G MOCS3 3'UTR 0.17 TCGA-CC-A7IE-01 20 62738102 62738102 T C NPBWR2 Missense_Mutation p.D28G 0.44 tolerated(0.23) benign(0.309) TCGA-CC-A7IE-01 21 10862958 10862958 C T IGHV1OR21-1 Missense_Mutation p.A85V 0.13 deleterious(0.01) benign(0.005) TCGA-CC-A7IE-01 21 43531615 43531615 G A UMODL1 Silent p.Q761Q 0.32 TCGA-CC-A7IE-01 21 47350755 47350755 A G PCBP3 Silent p.S284S 0.30 TCGA-CC-A7IE-01 22 17073473 17073473 T G CCT8L2 5'UTR 0.14 TCGA-CC-A7IE-01 22 22989284 22989284 C A GGTLC2 Missense_Mutation p.D79E 0.31 deleterious(0.05) benign(0.443) TCGA-CC-A7IE-01 22 26291221 26291221 A G MYO18B Missense_Mutation p.T1548A 0.33 tolerated(0.87) benign(0.008) TCGA-CC-A7IE-01 22 26343703 26343703 A T MYO18B Missense_Mutation p.Q1886L 0.32 deleterious(0) possibly_damaging(0.844) TCGA-CC-A7IE-01 22 31850167 31850167 T C EIF4ENIF1 Missense_Mutation p.K492R 0.34 deleterious(0) probably_damaging(0.995) TCGA-CC-A7IE-01 22 37524527 37524527 G A IL2RB Missense_Mutation p.P422L 0.36 deleterious(0) probably_damaging(1) TCGA-CC-A7IE-01 22 46594481 46594481 C T PPARA Silent p.V67V 0.17 TCGA-CC-A7IE-01 22 50644791 50644792 TC - SELO Frame_Shift_Del p.L201Mfs*32 0.23 TCGA-CC-A7IE-01 2 141083347 141083347 A C LRP1B Silent p.S4108S 0.36 TCGA-CC-A7IE-01 2 145182398 145182398 T A ZEB2 Missense_Mutation p.E123V 0.27 deleterious(0) benign(0.032) TCGA-CC-A7IE-01 2 145182399 145182399 C A ZEB2 Nonsense_Mutation p.E123* 0.27 TCGA-CC-A7IE-01 2 149241103 149241103 G T MBD5 Intron 0.18 TCGA-CC-A7IE-01 2 166904196 166904196 C A SCN1A Missense_Mutation p.A371S 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-CC-A7IE-01 2 209028038 209028038 G T CRYGA Missense_Mutation p.R48S 0.35 deleterious(0.02) possibly_damaging(0.888) TCGA-CC-A7IE-01 2 211459263 211459263 A G CPS1 Missense_Mutation p.K405R 0.24 tolerated(0.37) benign(0.034) TCGA-CC-A7IE-01 2 217124066 217124066 C A MARCH4 Missense_Mutation p.R401L 0.28 deleterious(0.02) probably_damaging(0.931) TCGA-CC-A7IE-01 2 220353551 220353551 C T SPEG Missense_Mutation p.T2693M 0.28 probably_damaging(0.998) TCGA-CC-A7IE-01 2 222301824 222301824 A G EPHA4 Missense_Mutation p.I698T 0.25 deleterious(0) probably_damaging(0.98) TCGA-CC-A7IE-01 2 225659771 225659771 C T DOCK10 Missense_Mutation p.R1660H 0.24 deleterious(0) possibly_damaging(0.849) TCGA-CC-A7IE-01 2 234296855 234296855 A G DGKD Intron 0.30 TCGA-CC-A7IE-01 2 241834941 241834941 T C C2orf54 Silent p.A158A 0.22 TCGA-CC-A7IE-01 2 26203290 26203290 G C KIF3C Missense_Mutation p.D499E 0.28 possibly_damaging(0.787) TCGA-CC-A7IE-01 2 33810623 33810623 C A FAM98A Nonsense_Mutation p.E288* 0.27 TCGA-CC-A7IE-01 2 40656977 40656977 C A SLC8A1 Missense_Mutation p.E148D 0.38 deleterious(0) probably_damaging(1) TCGA-CC-A7IE-01 2 61298747 61298747 A T KIAA1841 Nonsense_Mutation p.K53* 0.31 TCGA-CC-A7IE-01 2 70520565 70520565 A C SNRPG Intron 0.45 TCGA-CC-A7IE-01 2 74718274 74718274 G T TTC31 Missense_Mutation p.R189L 0.33 tolerated(0.1) benign(0.007) TCGA-CC-A7IE-01 2 88422904 88422904 C A FABP1 Intron 0.25 TCGA-CC-A7IE-01 3 151162741 151162741 G A IGSF10 Silent p.P1676P 0.10 TCGA-CC-A7IE-01 3 155655379 155655379 G A GMPS Splice_Site p.X661_splice 0.50 TCGA-CC-A7IE-01 3 156866025 156866025 G C CCNL1 3'UTR 0.24 TCGA-CC-A7IE-01 3 164907422 164907422 G A SLITRK3 Silent p.N399N 0.09 TCGA-CC-A7IE-01 3 175184840 175184840 T A NAALADL2 Silent p.T467T 0.12 TCGA-CC-A7IE-01 3 182988820 182988820 G A B3GNT5 3'UTR 0.10 TCGA-CC-A7IE-01 3 18390490 18390490 A T SATB1 3'UTR 0.12 TCGA-CC-A7IE-01 3 27152813 27152813 T A NEK10 Splice_Site p.X1157_splice 0.57 TCGA-CC-A7IE-01 3 3190043 3190043 G A TRNT1 3'UTR 0.22 TCGA-CC-A7IE-01 3 407776 407776 A G CHL1 Missense_Mutation p.I577V 0.09 tolerated(0.39) benign(0.001) TCGA-CC-A7IE-01 3 47088108 47088108 A C SETD2 Missense_Mutation p.Y2323D 0.29 deleterious(0) probably_damaging(0.996) TCGA-CC-A7IE-01 3 48699314 48699314 C A CELSR3 Missense_Mutation p.A252S 0.13 tolerated_low_confidence(0.06) benign(0.031) TCGA-CC-A7IE-01 3 52525454 52525454 T G NISCH Missense_Mutation p.S1277A 0.33 deleterious(0.03) benign(0.01) TCGA-CC-A7IE-01 4 105393500 105393500 T A CXXC4 Missense_Mutation p.E361D 0.21 tolerated_low_confidence(0.25) benign(0.012) TCGA-CC-A7IE-01 4 114244937 114244937 C T ANK2 Intron 0.21 TCGA-CC-A7IE-01 4 155252859 155252859 T A DCHS2 Silent p.A747A 0.24 TCGA-CC-A7IE-01 4 166261548 166261548 A T MSMO1 Intron 0.27 TCGA-CC-A7IE-01 4 3949905 3949913 TGATGGCTG - FAM86EP RNA 0.12 TCGA-CC-A7IE-01 4 6863293 6863293 A T KIAA0232 Missense_Mutation p.E395V 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CC-A7IE-01 4 71232527 71232527 G A SMR3A Missense_Mutation p.G74E 0.20 deleterious_low_confidence(0) unknown(0) TCGA-CC-A7IE-01 4 72634108 72634108 A G GC Silent p.F76F 0.06 TCGA-CC-A7IE-01 4 73956454 73956454 T - ANKRD17 Frame_Shift_Del p.L2297Ffs*36 0.14 TCGA-CC-A7IE-01 4 74124085 74124085 C A ANKRD17 Missense_Mutation p.G101C 0.16 probably_damaging(0.981) TCGA-CC-A7IE-01 4 8605757 8605757 G A CPZ Missense_Mutation p.R184H 0.19 tolerated(0.14) benign(0.005) TCGA-CC-A7IE-01 4 87022310 87022310 C T MAPK10 Missense_Mutation p.G209R 0.23 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IE-01 5 109178131 109178131 A G MAN2A1 Missense_Mutation p.N890S 0.37 tolerated(0.09) possibly_damaging(0.755) TCGA-CC-A7IE-01 5 127520082 127520082 T A SLC12A2 Silent p.I1108I 0.17 TCGA-CC-A7IE-01 5 139943491 139943491 C G APBB3 Missense_Mutation p.W20S 0.12 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IE-01 5 140476346 140476346 G A PCDHB2 Missense_Mutation p.A658T 0.38 deleterious_low_confidence(0.01) benign(0.015) TCGA-CC-A7IE-01 5 140562936 140562936 G T PCDHB16 Missense_Mutation p.D268Y 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-CC-A7IE-01 5 157053481 157053481 G A SOX30 Missense_Mutation p.P710L 0.63 deleterious(0.04) benign(0.055) TCGA-CC-A7IE-01 5 170736625 170736625 G A TLX3 Missense_Mutation p.G86S 0.49 deleterious(0.02) probably_damaging(0.997) TCGA-CC-A7IE-01 5 170736626 170736626 G T TLX3 Missense_Mutation p.G86V 0.50 deleterious(0) probably_damaging(0.998) TCGA-CC-A7IE-01 5 17275434 17275434 C A BASP1 Missense_Mutation p.P37T 0.14 tolerated(0.05) unknown(0) TCGA-CC-A7IE-01 5 180001165 180001165 C G CNOT6 Missense_Mutation p.Q547E 0.28 tolerated(1) benign(0.005) TCGA-CC-A7IE-01 5 79817830 79817830 T C FAM151B Missense_Mutation p.W182R 0.36 tolerated(1) possibly_damaging(0.649) TCGA-CC-A7IE-01 6 110448713 110448713 T A WASF1 Missense_Mutation p.N31I 0.20 deleterious(0) unknown(0) TCGA-CC-A7IE-01 6 116756880 116756880 T C DSE Missense_Mutation p.F417L 0.26 deleterious(0.01) possibly_damaging(0.521) TCGA-CC-A7IE-01 6 123673710 123673710 T A TRDN Missense_Mutation p.E448V 0.26 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-CC-A7IE-01 6 1314208 1314208 G C FOXQ1 3'UTR 0.25 TCGA-CC-A7IE-01 6 149700569 149700569 C A TAB2 Silent p.L506L 0.30 TCGA-CC-A7IE-01 6 26189297 26189297 C G HIST1H4D Missense_Mutation p.G3A 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-CC-A7IE-01 6 29141346 29141346 C A OR2J2 5'UTR 0.34 TCGA-CC-A7IE-01 6 46803136 46803136 A T MEP1A Missense_Mutation p.Q645L 0.31 tolerated(0.28) benign(0.011) TCGA-CC-A7IE-01 6 46834865 46834865 T C GPR116 Missense_Mutation p.H544R 0.20 tolerated(0.36) benign(0.013) TCGA-CC-A7IE-01 6 49825047 49825047 C A CRISP1 Splice_Site p.X22_splice 0.28 TCGA-CC-A7IE-01 6 75853040 75853040 A G COL12A1 Silent p.F1585F 0.19 TCGA-CC-A7IE-01 6 99286100 99286100 T A POU3F2 3'UTR 0.28 TCGA-CC-A7IE-01 6 99781226 99781226 C A FAXC Splice_Site p.X200_splice 0.27 TCGA-CC-A7IE-01 6 99781227 99781227 C G FAXC Missense_Mutation p.W200S 0.29 deleterious(0) probably_damaging(0.983) TCGA-CC-A7IE-01 7 1026832 1026832 C T CYP2W1 Silent p.A303A 0.45 TCGA-CC-A7IE-01 7 107262121 107262121 C T BCAP29 3'UTR 0.10 TCGA-CC-A7IE-01 7 107435030 107435030 A T SLC26A3 5'UTR 0.15 TCGA-CC-A7IE-01 7 107689935 107689935 A G LAMB4 Missense_Mutation p.S1320P 0.25 tolerated(0.3) possibly_damaging(0.794) TCGA-CC-A7IE-01 7 12397064 12397064 C A VWDE Missense_Mutation p.V1118L 0.11 tolerated(0.86) benign(0.002) TCGA-CC-A7IE-01 7 12407058 12407058 A G VWDE Silent p.N941N 0.42 TCGA-CC-A7IE-01 7 141537856 141537856 C T PRSS37 Silent p.Q78Q 0.36 TCGA-CC-A7IE-01 7 153750140 153750140 G A DPP6 Missense_Mutation p.E79K 0.13 tolerated(0.36) benign(0.022) TCGA-CC-A7IE-01 7 20198940 20198940 A T MACC1 Silent p.V348V 0.18 TCGA-CC-A7IE-01 7 53104496 53104496 C A POM121L12 3'UTR 0.31 TCGA-CC-A7IE-01 7 6547736 6547736 G A GRID2IP Silent p.P808P 0.32 TCGA-CC-A7IE-01 7 6777037 6777037 A G PMS2CL RNA 0.10 TCGA-CC-A7IE-01 7 80088145 80088145 T C GNAT3 Missense_Mutation p.I303V 0.18 deleterious(0.03) benign(0.078) TCGA-CC-A7IE-01 8 113326738 113326738 A T CSMD3 Missense_Mutation p.V2490E 0.19 deleterious(0) probably_damaging(0.988) TCGA-CC-A7IE-01 8 145140854 145140854 G T GPAA1 Missense_Mutation p.W564C 0.26 deleterious(0.04) probably_damaging(0.969) TCGA-CC-A7IE-01 8 145737119 145737119 C T RECQL4 Silent p.L1149L 0.06 TCGA-CC-A7IE-01 8 146067302 146067302 A G ZNF7 Silent p.R270R 0.43 TCGA-CC-A7IE-01 8 22460754 22460754 C T C8orf58 Missense_Mutation p.R345W 0.44 deleterious(0.02) probably_damaging(0.997) TCGA-CC-A7IE-01 8 27097475 27097475 A T STMN4 Intron 0.31 TCGA-CC-A7IE-01 8 27324779 27324779 A G CHRNA2 Missense_Mutation p.M139T 0.32 tolerated(0.52) possibly_damaging(0.854) TCGA-CC-A7IE-01 8 52387637 52387637 C T PXDNL Missense_Mutation p.G197S 0.47 tolerated(0.73) benign(0.004) TCGA-CC-A7IE-01 8 71082595 71082597 AAG - NCOA2 In_Frame_Del p.F128del 0.21 TCGA-CC-A7IE-01 8 7698631 7698631 A T DEFB104A Missense_Mutation p.E45V 0.17 deleterious(0) probably_damaging(0.937) TCGA-CC-A7IE-01 8 82571546 82571546 T C IMPA1 3'UTR 0.20 TCGA-CC-A7IE-01 8 99440321 99440321 C T KCNS2 Silent p.F38F 0.11 TCGA-CC-A7IE-01 9 129599003 129599003 A C ZBTB43 3'UTR 0.28 TCGA-CC-A7IE-01 9 131285594 131285601 AAGCTGAG - GLE1 Frame_Shift_Del p.K206Tfs*58 0.20 TCGA-CC-A7IE-01 9 138647016 138647016 G T KCNT1 Splice_Site p.X180_splice 0.43 TCGA-CC-A7IE-01 9 15422788 15422788 C G SNAPC3 5'UTR 0.22 TCGA-CC-A7IE-01 9 19376359 19376380 TTTGTTCCTGGCGCTTCTCCTT - RPS6 Frame_Shift_Del p.K221Lfs*26 0.11 TCGA-CC-A7IE-01 9 87342704 87342704 T C NTRK2 Missense_Mutation p.I330T 0.32 tolerated(0.08) probably_damaging(0.999) TCGA-CC-A7IE-01 9 99580150 99580150 T C ZNF782 3'UTR 0.35 TCGA-CC-A7IE-01 X 102333500 102333500 C G NXF3 Missense_Mutation p.G480A 0.56 tolerated(1) benign(0.085) TCGA-CC-A7IE-01 X 118220842 118220842 C T KIAA1210 Missense_Mutation p.E1451K 0.58 tolerated(0.08) possibly_damaging(0.719) TCGA-CC-A7IE-01 X 50341497 50341497 G T SHROOM4 Silent p.V1327V 0.56 TCGA-CC-A7IE-01 X 69420190 69420190 T C DGAT2L6 Missense_Mutation p.I118T 0.57 tolerated(0.12) benign(0.446) TCGA-CC-A7IE-01 X 72225041 72225041 C T PABPC1L2B 3'UTR 0.48 TCGA-CC-A7IF-01 10 103343233 103343233 A C POLL Intron 0.47 TCGA-CC-A7IF-01 10 104268937 104268937 C A SUFU Missense_Mutation p.P65Q 0.34 tolerated(0.19) probably_damaging(1) TCGA-CC-A7IF-01 10 127350498 127350498 C A TEX36 Missense_Mutation p.A34S 0.42 tolerated(0.7) benign(0.042) TCGA-CC-A7IF-01 10 18292051 18292051 C A SLC39A12 Intron 0.36 TCGA-CC-A7IF-01 10 34558586 34558586 T C PARD3 Missense_Mutation p.S1143G 0.38 deleterious(0.01) benign(0.335) TCGA-CC-A7IF-01 10 47088181 47088181 C G NPY4R 3'UTR 0.25 TCGA-CC-A7IF-01 10 53458521 53458521 T A CSTF2T Silent p.P263P 0.48 TCGA-CC-A7IF-01 10 55582876 55582876 G T PCDH15 Nonsense_Mutation p.S1539* 0.40 TCGA-CC-A7IF-01 10 82394233 82394233 C T SH2D4B Intron 0.21 TCGA-CC-A7IF-01 10 86131217 86131217 G T CCSER2 Nonsense_Mutation p.E137* 0.44 TCGA-CC-A7IF-01 10 97916530 97916530 C T ZNF518A RNA 0.32 TCGA-CC-A7IF-01 11 103018556 103018556 G A DYNC2H1 Missense_Mutation p.D920N 0.29 possibly_damaging(0.82) TCGA-CC-A7IF-01 11 111405403 111405403 G C C11orf88 Intron 0.35 TCGA-CC-A7IF-01 11 112123130 112123130 G A PLET1 Missense_Mutation p.A130V 0.09 tolerated(0.27) possibly_damaging(0.866) TCGA-CC-A7IF-01 11 116628662 116628662 C T BUD13 Missense_Mutation p.A502T 0.43 deleterious(0.05) probably_damaging(0.933) TCGA-CC-A7IF-01 11 119207480 119207480 A G RNF26 3'UTR 0.08 TCGA-CC-A7IF-01 11 17650826 17650826 C T OTOG Silent p.A2237A 0.62 TCGA-CC-A7IF-01 11 194499 194499 G A SCGB1C1 3'UTR 0.18 TCGA-CC-A7IF-01 11 22380971 22380971 T G SLC17A6 Silent p.A157A 0.42 TCGA-CC-A7IF-01 11 56127868 56127868 C A OR8J1 Missense_Mutation p.T49N 0.49 deleterious(0) possibly_damaging(0.732) TCGA-CC-A7IF-01 11 60668323 60668323 C T PRPF19 Intron 0.45 TCGA-CC-A7IF-01 11 6453022 6453022 T C HPX Silent p.V326V 0.47 TCGA-CC-A7IF-01 11 67290835 67290835 G A CABP2 5'UTR 0.40 TCGA-CC-A7IF-01 11 7110658 7110658 G A RBMXL2 Missense_Mutation p.G103S 0.24 tolerated(0.48) possibly_damaging(0.862) TCGA-CC-A7IF-01 11 7530924 7530924 A C OLFML1 Missense_Mutation p.K238N 0.37 deleterious(0) probably_damaging(1) TCGA-CC-A7IF-01 11 77301269 77301269 A T AQP11 Missense_Mutation p.T78S 0.43 tolerated(0.17) benign(0.011) TCGA-CC-A7IF-01 11 89867856 89867856 G C NAALAD2 5'UTR 0.50 TCGA-CC-A7IF-01 12 100660786 100660786 A T DEPDC4 Silent p.L23L 0.37 TCGA-CC-A7IF-01 12 102108302 102108302 T G CHPT1 Missense_Mutation p.S148A 0.35 deleterious(0.03) benign(0.012) TCGA-CC-A7IF-01 12 102433674 102433674 T C CCDC53 Missense_Mutation p.Y136C 0.58 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IF-01 12 125397123 125397123 G A UBC Missense_Mutation p.P399S 0.38 tolerated(1) benign(0.006) TCGA-CC-A7IF-01 12 25002861 25002861 G T BCAT1 Missense_Mutation p.P190H 0.44 deleterious(0) probably_damaging(0.985) TCGA-CC-A7IF-01 12 43860553 43860553 T C ADAMTS20 Silent p.K423K 0.30 TCGA-CC-A7IF-01 12 4722680 4722680 G A DYRK4 Missense_Mutation p.D442N 0.34 tolerated(0.07) benign(0.004) TCGA-CC-A7IF-01 12 5153761 5153761 G A KCNA5 Missense_Mutation p.A150T 0.08 tolerated(0.55) benign(0.011) TCGA-CC-A7IF-01 12 53873278 53873278 A G PCBP2 3'UTR 0.31 TCGA-CC-A7IF-01 12 54686660 54686660 G A NFE2 Missense_Mutation p.P207L 0.25 tolerated(0.27) benign(0.1) TCGA-CC-A7IF-01 12 54936700 54936700 C T NCKAP1L 3'UTR 0.75 TCGA-CC-A7IF-01 12 95228734 95228734 G T MIR492 3'Flank 0.60 TCGA-CC-A7IF-01 13 46083887 46083887 G T COG3 Missense_Mutation p.G552V 0.36 deleterious(0) probably_damaging(0.985) TCGA-CC-A7IF-01 13 46619087 46619087 T A ZC3H13 Intron 0.86 TCGA-CC-A7IF-01 14 104026264 104026264 T C BAG5 Missense_Mutation p.D454G 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-CC-A7IF-01 14 34269611 34269611 G T NPAS3 Missense_Mutation p.G700W 0.19 deleterious_low_confidence(0) benign(0.325) TCGA-CC-A7IF-01 14 88707142 88707142 G A KCNK10 Missense_Mutation p.A142V 0.40 tolerated(0.07) possibly_damaging(0.754) TCGA-CC-A7IF-01 14 92058310 92058310 T C CATSPERB Missense_Mutation p.T916A 0.40 deleterious(0.03) benign(0.086) TCGA-CC-A7IF-01 14 93170621 93170621 G A LGMN 3'UTR 0.45 TCGA-CC-A7IF-01 14 93720042 93720042 C T BTBD7 Missense_Mutation p.G568D 0.31 deleterious(0) probably_damaging(0.957) TCGA-CC-A7IF-01 15 34109089 34109089 A T RYR3 Missense_Mutation p.H3510L 0.30 benign(0.001) TCGA-CC-A7IF-01 15 38794569 38794569 T G RASGRP1 Missense_Mutation p.E494D 0.54 tolerated(0.79) benign(0.149) TCGA-CC-A7IF-01 15 62201321 62201321 C T VPS13C Missense_Mutation p.G2950R 0.11 deleterious(0) probably_damaging(0.983) TCGA-CC-A7IF-01 15 68657110 68657110 C T ITGA11 Missense_Mutation p.E98K 0.24 tolerated(0.19) possibly_damaging(0.696) TCGA-CC-A7IF-01 15 90808900 90808900 C T NGRN 5'Flank 0.68 TCGA-CC-A7IF-01 16 10631874 10631874 C A EMP2 Missense_Mutation p.C76F 0.41 tolerated(0.09) probably_damaging(0.989) TCGA-CC-A7IF-01 16 24579152 24579152 T G RBBP6 Missense_Mutation p.D664E 0.09 deleterious_low_confidence(0) possibly_damaging(0.846) TCGA-CC-A7IF-01 16 2499459 2499459 G T CCNF Silent p.G465G 0.46 TCGA-CC-A7IF-01 16 27802517 27802517 C T GSG1L 3'UTR 0.53 TCGA-CC-A7IF-01 16 47005262 47005262 T G DNAJA2 Missense_Mutation p.K121Q 0.70 tolerated(0.13) benign(0.01) TCGA-CC-A7IF-01 17 19285377 19285377 G T MAPK7 Silent p.P587P 0.79 TCGA-CC-A7IF-01 17 32483591 32483591 C T ASIC2 5'UTR 0.19 TCGA-CC-A7IF-01 17 36619596 36619596 G A ARHGAP23 Missense_Mutation p.M152I 0.17 deleterious(0) probably_damaging(0.993) TCGA-CC-A7IF-01 17 37347830 37347830 T C CACNB1 Missense_Mutation p.Y63C 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-CC-A7IF-01 17 43366633 43366633 G C MAP3K14 RNA 0.57 TCGA-CC-A7IF-01 17 7483022 7483022 G C CD68 Silent p.G9G 0.50 TCGA-CC-A7IF-01 17 76499109 76499109 A G DNAH17-AS1 3'UTR 0.25 TCGA-CC-A7IF-01 18 56118316 56118316 G A MIR122 RNA 0.40 TCGA-CC-A7IF-01 18 60242216 60242216 C G ZCCHC2 Missense_Mutation p.P968A 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-CC-A7IF-01 18 63511191 63511191 T A CDH7 Silent p.P375P 0.35 TCGA-CC-A7IF-01 19 13054713 13054713 A G CALR Missense_Mutation p.K414E 0.33 tolerated_low_confidence(1) unknown(0) TCGA-CC-A7IF-01 19 13056746 13056746 G T RAD23A 5'UTR 0.39 TCGA-CC-A7IF-01 19 13259885 13259886 - A STX10 Frame_Shift_Ins p.S108Qfs*12 0.19 TCGA-CC-A7IF-01 19 16890277 16890277 G C NWD1 Splice_Site p.X911_splice 0.36 TCGA-CC-A7IF-01 19 19256491 19256491 C T MEF2B 3'Flank 0.20 TCGA-CC-A7IF-01 19 33572019 33572019 G A GPATCH1 5'UTR 0.44 TCGA-CC-A7IF-01 19 38907809 38907809 C A RASGRP4 Splice_Site p.X280_splice 0.53 TCGA-CC-A7IF-01 19 46404577 46404577 T A MYPOP Missense_Mutation p.Q152L 0.35 deleterious(0.01) benign(0.081) TCGA-CC-A7IF-01 19 46457041 46457041 C A NOVA2 Missense_Mutation p.K131N 0.36 deleterious(0) unknown(0) TCGA-CC-A7IF-01 19 48734194 48734194 C T CARD8 Silent p.E204E 0.68 TCGA-CC-A7IF-01 19 51506278 51506278 A G KLK9 3'UTR 0.55 TCGA-CC-A7IF-01 19 579633 579633 G A BSG Silent p.L183L 0.35 TCGA-CC-A7IF-01 19 58193543 58193543 G T ZNF551 Silent p.P4P 0.57 TCGA-CC-A7IF-01 19 58579143 58579143 A G ZNF135 Missense_Mutation p.I455V 0.09 tolerated(0.26) possibly_damaging(0.689) TCGA-CC-A7IF-01 19 6364566 6364566 G A CLPP Silent p.L157L 0.11 TCGA-CC-A7IF-01 19 9059979 9059979 G T MUC16 Missense_Mutation p.S9156Y 0.26 unknown(0) TCGA-CC-A7IF-01 19 9084032 9084032 T A MUC16 Missense_Mutation p.S2595C 0.24 unknown(0) TCGA-CC-A7IF-01 1 117146494 117146494 T A IGSF3 Missense_Mutation p.N479I 0.10 tolerated(0.08) possibly_damaging(0.905) TCGA-CC-A7IF-01 1 117944848 117944848 C T MAN1A2 Missense_Mutation p.H115Y 0.22 tolerated(1) benign(0.067) TCGA-CC-A7IF-01 1 153752329 153752329 A G SLC27A3 Missense_Mutation p.K682E 0.55 deleterious(0) probably_damaging(0.993) TCGA-CC-A7IF-01 1 15753664 15753664 A G EFHD2 Missense_Mutation p.K159E 0.41 deleterious(0.01) possibly_damaging(0.64) TCGA-CC-A7IF-01 1 157548283 157548283 C G FCRL4 Missense_Mutation p.Q470H 0.33 tolerated(0.07) benign(0.371) TCGA-CC-A7IF-01 1 161196209 161196209 G T TOMM40L 5'UTR 0.12 TCGA-CC-A7IF-01 1 167666394 167666394 A C RCSD1 Missense_Mutation p.Q178P 0.07 tolerated(0.09) probably_damaging(0.999) TCGA-CC-A7IF-01 1 17297149 17297149 C T CROCC Missense_Mutation p.R1891C 0.08 possibly_damaging(0.835) TCGA-CC-A7IF-01 1 205052515 205052515 T A TMEM81 3'UTR 0.53 TCGA-CC-A7IF-01 1 205241320 205241320 T A TMCC2 3'UTR 0.50 TCGA-CC-A7IF-01 1 216040477 216040477 T C USH2A Missense_Mutation p.N2906S 0.43 probably_damaging(0.951) TCGA-CC-A7IF-01 1 247264138 247264138 A - ZNF669 Frame_Shift_Del p.C311Wfs*64 0.18 TCGA-CC-A7IF-01 1 248024000 248024000 A G TRIM58 Missense_Mutation p.T168A 0.49 tolerated(0.21) benign(0.317) TCGA-CC-A7IF-01 1 248844793 248844793 C A OR14I1 Silent p.V271V 0.20 TCGA-CC-A7IF-01 1 35578710 35578710 A G ZMYM1 Missense_Mutation p.N427D 0.21 tolerated(0.06) benign(0.004) TCGA-CC-A7IF-01 1 43637963 43637963 A G EBNA1BP2 Silent p.L44L 0.26 TCGA-CC-A7IF-01 1 67833704 67833704 T C IL12RB2 Silent p.I485I 0.14 TCGA-CC-A7IF-01 1 86939514 86939514 C A CLCA1 Missense_Mutation p.P136T 0.09 deleterious(0) possibly_damaging(0.608) TCGA-CC-A7IF-01 1 94496008 94496008 C T ABCA4 Missense_Mutation p.R1443H 0.14 deleterious(0.03) probably_damaging(0.931) TCGA-CC-A7IF-01 20 23016896 23016896 G A SSTR4 Missense_Mutation p.R259K 0.31 tolerated(0.08) benign(0.35) TCGA-CC-A7IF-01 20 3739248 3739248 C A C20orf27 Missense_Mutation p.D58Y 0.74 deleterious(0) probably_damaging(0.916) TCGA-CC-A7IF-01 22 25270403 25270403 G A SGSM1 Missense_Mutation p.S438N 0.42 tolerated(0.37) benign(0) TCGA-CC-A7IF-01 22 28196151 28196151 G A MN1 Silent p.C127C 0.31 TCGA-CC-A7IF-01 2 107423271 107423271 G A ST6GAL2 Silent p.L485L 0.48 TCGA-CC-A7IF-01 2 108917249 108917249 T A SULT1C2 Intron 0.16 TCGA-CC-A7IF-01 2 110373745 110373745 A T SOWAHC 3'UTR 0.45 TCGA-CC-A7IF-01 2 118703151 118703151 G A CCDC93 Missense_Mutation p.S435F 0.33 deleterious(0.03) benign(0.037) TCGA-CC-A7IF-01 2 17998144 17998144 G A MSGN1 Missense_Mutation p.R120K 0.36 tolerated(0.98) benign(0.002) TCGA-CC-A7IF-01 2 210588377 210588377 A T MAP2 Intron 0.44 TCGA-CC-A7IF-01 2 225688292 225688292 G T DOCK10 Missense_Mutation p.H1037N 0.47 deleterious(0.03) probably_damaging(0.993) TCGA-CC-A7IF-01 2 29259514 29259514 C A FAM179A Missense_Mutation p.H842Q 0.40 tolerated(0.17) benign(0.057) TCGA-CC-A7IF-01 2 96799781 96799781 A C ASTL Missense_Mutation p.L87R 0.34 deleterious(0.05) possibly_damaging(0.467) TCGA-CC-A7IF-01 3 154146446 154146446 A T GPR149 Missense_Mutation p.V320D 0.40 deleterious(0) possibly_damaging(0.882) TCGA-CC-A7IF-01 3 158525238 158525238 A C MFSD1 Silent p.G191G 0.41 TCGA-CC-A7IF-01 3 184646286 184646286 G C VPS8 Missense_Mutation p.E893D 0.47 tolerated(0.17) benign(0.084) TCGA-CC-A7IF-01 3 23934410 23934410 T A NKIRAS1 3'UTR 0.56 TCGA-CC-A7IF-01 3 38035098 38035098 C T VILL 5'UTR 0.15 TCGA-CC-A7IF-01 3 87303053 87303053 C A CHMP2B 3'UTR 0.25 TCGA-CC-A7IF-01 4 154636682 154636682 C T RNF175 Missense_Mutation p.V255I 0.34 tolerated(0.15) benign(0.004) TCGA-CC-A7IF-01 4 155412382 155412382 C T DCHS2 Silent p.R42R 0.21 TCGA-CC-A7IF-01 4 160243510 160243510 G T RAPGEF2 Nonsense_Mutation p.E128* 0.75 TCGA-CC-A7IF-01 4 175898867 175898867 C A ADAM29 Missense_Mutation p.Q731K 0.89 tolerated(0.57) benign(0.01) TCGA-CC-A7IF-01 4 175898869 175898869 G A ADAM29 Silent p.Q731Q 0.87 TCGA-CC-A7IF-01 4 25005095 25005095 A G LGI2 Missense_Mutation p.I539T 0.44 tolerated(0.14) benign(0.403) TCGA-CC-A7IF-01 4 42895442 42895442 T A GRXCR1 Missense_Mutation p.D53E 0.52 tolerated(0.42) benign(0.001) TCGA-CC-A7IF-01 4 55964415 55964415 C G KDR Missense_Mutation p.G800R 0.25 deleterious(0) probably_damaging(1) TCGA-CC-A7IF-01 4 69816874 69816874 C A UGT2A3 Missense_Mutation p.R202I 0.43 deleterious(0) possibly_damaging(0.739) TCGA-CC-A7IF-01 5 10258415 10258415 A C CCT5 Missense_Mutation p.K241N 0.17 deleterious(0) possibly_damaging(0.868) TCGA-CC-A7IF-01 5 108714271 108714271 T C PJA2 Missense_Mutation p.H306R 0.20 tolerated(0.1) benign(0.001) TCGA-CC-A7IF-01 5 13917343 13917343 C T DNAH5 Missense_Mutation p.R333Q 0.41 benign(0) TCGA-CC-A7IF-01 5 140433011 140433011 T A PCDHB1 Silent p.A652A 0.41 TCGA-CC-A7IF-01 5 41017973 41017973 T C MROH2B Missense_Mutation p.I955V 0.07 tolerated(0.44) benign(0.098) TCGA-CC-A7IF-01 5 5462512 5462512 G C KIAA0947 Missense_Mutation p.G1022A 0.24 deleterious(0.02) possibly_damaging(0.904) TCGA-CC-A7IF-01 5 7709399 7709399 C T ADCY2 Missense_Mutation p.R493C 0.31 deleterious(0) possibly_damaging(0.776) TCGA-CC-A7IF-01 6 136704840 136704840 T A MAP7 Silent p.S224S 0.76 TCGA-CC-A7IF-01 6 142409548 142409548 G T NMBR Missense_Mutation p.S83Y 0.79 deleterious(0) probably_damaging(0.994) TCGA-CC-A7IF-01 6 22569728 22569728 C T HDGFL1 5'Flank 0.22 TCGA-CC-A7IF-01 6 30154170 30154170 A T TRIM26 Missense_Mutation p.V368D 0.40 tolerated(0.09) probably_damaging(0.988) TCGA-CC-A7IF-01 6 32149151 32149151 C T AGER Silent p.R365R 0.36 TCGA-CC-A7IF-01 6 38858481 38858481 T C DNAH8 Missense_Mutation p.C2626R 0.48 benign(0.062) TCGA-CC-A7IF-01 6 393203 393203 G A IRF4 Silent p.V17V 0.42 TCGA-CC-A7IF-01 7 113517648 113517648 C T PPP1R3A 3'UTR 0.36 TCGA-CC-A7IF-01 7 134642970 134642970 A - CALD1 Frame_Shift_Del p.K664Nfs*8 0.10 TCGA-CC-A7IF-01 7 136587968 136587968 G A CHRM2 Intron 0.42 TCGA-CC-A7IF-01 7 149152414 149152414 G T ZNF777 Missense_Mutation p.L234M 0.42 deleterious(0.03) probably_damaging(0.918) TCGA-CC-A7IF-01 7 150416151 150416151 A C GIMAP1 Missense_Mutation p.M6L 0.45 deleterious(0.02) benign(0.111) TCGA-CC-A7IF-01 7 154862937 154862937 G T HTR5A-AS1 Missense_Mutation p.P26H 0.46 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-CC-A7IF-01 7 5541166 5541166 T A FBXL18 Missense_Mutation p.E245V 0.47 deleterious(0.03) probably_damaging(0.999) TCGA-CC-A7IF-01 7 6370320 6370355 GCAGTCGTGACACCCGAGGCTCTCCTTTGGGGCACT - FAM220A In_Frame_Del p.Q144_L155del 0.36 TCGA-CC-A7IF-01 7 63982871 63982872 AT - ZNF680 Frame_Shift_Del p.Y87Ffs*5 0.18 TCGA-CC-A7IF-01 7 72663972 72663972 T A GTF2IRD2P1 RNA 0.45 TCGA-CC-A7IF-01 7 81964563 81964563 T A CACNA2D1 Missense_Mutation p.Y61F 0.42 tolerated(0.25) benign(0.084) TCGA-CC-A7IF-01 7 98552830 98552830 A T TRRAP Missense_Mutation p.Q1940L 0.52 benign(0.165) TCGA-CC-A7IF-01 7 99270218 99270218 G T CYP3A5 Silent p.V101V 0.36 TCGA-CC-A7IF-01 8 109796877 109796877 C A TMEM74 Missense_Mutation p.A151S 0.47 tolerated(0.8) benign(0.09) TCGA-CC-A7IF-01 8 110099964 110099964 T A TRHR Missense_Mutation p.L75M 0.08 deleterious(0) probably_damaging(1) TCGA-CC-A7IF-01 8 113418769 113418769 G T CSMD3 Silent p.S1931S 0.38 TCGA-CC-A7IF-01 8 121444294 121444294 T C MRPL13 Missense_Mutation p.Q74R 0.10 tolerated(0.4) possibly_damaging(0.725) TCGA-CC-A7IF-01 8 182347 182347 G C ZNF596 5'Flank 0.14 TCGA-CC-A7IF-01 8 52233381 52233381 C G PXDNL Missense_Mutation p.R1408P 0.12 tolerated(0.22) possibly_damaging(0.587) TCGA-CC-A7IF-01 8 57892756 57892756 T C IMPAD1 Missense_Mutation p.I130V 0.56 tolerated(1) benign(0.004) TCGA-CC-A7IF-01 8 89053579 89053579 C G MMP16 3'UTR 0.48 TCGA-CC-A7IF-01 8 94740580 94740580 G C FAM92A1 3'UTR 0.15 TCGA-CC-A7IF-01 9 134585122 134585122 C T RAPGEF1 5'UTR 0.50 TCGA-CC-A7IF-01 9 135862139 135862139 C T GFI1B Missense_Mutation p.P25L 0.52 tolerated(0.38) benign(0.001) TCGA-CC-A7IF-01 9 138676396 138676396 T A KCNT1 Missense_Mutation p.Y987N 0.40 deleterious(0.02) probably_damaging(0.966) TCGA-CC-A7IF-01 9 139612124 139612124 C A FAM69B Nonsense_Mutation p.Y53* 0.57 TCGA-CC-A7IF-01 9 14816776 14816776 C A FREM1 Missense_Mutation p.E880D 0.59 deleterious(0.02) benign(0.027) TCGA-CC-A7IF-01 9 32786023 32786023 A G TMEM215 3'UTR 0.52 TCGA-CC-A7IF-01 9 36246477 36246477 T C GNE Missense_Mutation p.N87S 0.67 tolerated(0.43) benign(0.04) TCGA-CC-A7IF-01 9 6986628 6986628 G C KDM4C Missense_Mutation p.V547L 0.19 tolerated(0.34) benign(0.002) TCGA-CC-A7IF-01 9 73442764 73442764 T A TRPM3 Silent p.T324T 0.24 TCGA-CC-A7IF-01 9 73479369 73479369 G C TRPM3 Missense_Mutation p.P79R 0.31 deleterious(0) possibly_damaging(0.857) TCGA-CC-A7IF-01 9 79322771 79322771 C T PRUNE2 Silent p.E1473E 0.51 TCGA-CC-A7IF-01 9 80923477 80923477 T C PSAT1 Missense_Mutation p.Y240H 0.59 tolerated(0.12) benign(0.025) TCGA-CC-A7IF-01 X 100808723 100808723 C A ARMCX1 Silent p.A270A 0.81 TCGA-CC-A7IF-01 X 100808724 100808724 C A ARMCX1 Missense_Mutation p.L271I 0.81 deleterious(0) probably_damaging(0.994) TCGA-CC-A7IF-01 X 119243261 119243261 C G RHOXF1 Splice_Site p.X149_splice 0.89 TCGA-CC-A7IF-01 X 129518890 129518890 T A GPR119 Missense_Mutation p.M178L 0.84 tolerated(1) benign(0) TCGA-CC-A7IF-01 X 33229618 33229618 G T DMD 5'UTR 0.82 TCGA-CC-A7IF-01 X 48418242 48418242 G T TBC1D25 Missense_Mutation p.D316Y 0.82 deleterious(0.04) probably_damaging(1) TCGA-CC-A7IF-01 X 51151186 51151186 C A CXorf67 Missense_Mutation p.P440T 0.80 tolerated(0.8) probably_damaging(0.917) TCGA-CC-A7IF-01 Y 2722723 2722724 - CT RPS4Y1 Frame_Shift_Ins p.Y149Sfs*9 0.49 TCGA-CC-A7IG-01 10 103827340 103827340 G T HPS6 Missense_Mutation p.E703D 0.48 tolerated(1) benign(0.088) TCGA-CC-A7IG-01 10 135122613 135122613 A C ZNF511 Intron 0.23 TCGA-CC-A7IG-01 10 37455583 37455583 G T ANKRD30A Silent p.A649A 0.28 TCGA-CC-A7IG-01 10 50121829 50121829 G A LRRC18 Silent p.R124R 0.33 TCGA-CC-A7IG-01 11 1017131 1017131 G T MUC6 Missense_Mutation p.H1890Q 0.17 probably_damaging(0.917) TCGA-CC-A7IG-01 11 106810405 106810405 G C GUCY1A2 Missense_Mutation p.F329L 0.36 deleterious(0) probably_damaging(0.991) TCGA-CC-A7IG-01 11 107488841 107488841 C G ELMOD1 5'UTR 0.43 TCGA-CC-A7IG-01 11 114569227 114569227 A C NXPE2 Missense_Mutation p.E198A 0.30 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IG-01 11 118980899 118980899 A G C2CD2L Missense_Mutation p.E147G 0.48 tolerated(0.37) benign(0.003) TCGA-CC-A7IG-01 11 118986773 118986773 G T C2CD2L Missense_Mutation p.G644V 0.28 deleterious(0) probably_damaging(1) TCGA-CC-A7IG-01 11 13750208 13750208 T C FAR1 Missense_Mutation p.W479R 0.33 deleterious(0) benign(0.032) TCGA-CC-A7IG-01 11 18754797 18754797 G T PTPN5 Silent p.I401I 0.48 TCGA-CC-A7IG-01 11 194445 194445 G A SCGB1C1 Missense_Mutation p.A95T 0.33 deleterious(0.01) benign(0.314) TCGA-CC-A7IG-01 11 609135 609135 C G PHRF1 Missense_Mutation p.H1226D 0.32 tolerated(0.66) benign(0.002) TCGA-CC-A7IG-01 11 66259030 66259030 C A DPP3 Silent p.G288G 0.43 TCGA-CC-A7IG-01 11 6964783 6964783 T A ZNF215 Missense_Mutation p.L208Q 0.44 tolerated(0.07) probably_damaging(0.915) TCGA-CC-A7IG-01 11 69995875 69995875 C T ANO1 Missense_Mutation p.L440F 0.45 deleterious(0) probably_damaging(1) TCGA-CC-A7IG-01 11 73020736 73020736 C T ARHGEF17 Silent p.C351C 0.08 TCGA-CC-A7IG-01 11 77692543 77692543 C T INTS4 Missense_Mutation p.C109Y 0.43 deleterious(0.05) benign(0.332) TCGA-CC-A7IG-01 11 82644353 82644353 A G C11orf82 Missense_Mutation p.N658S 0.21 tolerated(0.48) benign(0.002) TCGA-CC-A7IG-01 11 92577146 92577146 G A FAT3 Missense_Mutation p.R3538H 0.45 benign(0.005) TCGA-CC-A7IG-01 11 94316706 94316706 C A PIWIL4 Nonsense_Mutation p.C202* 0.43 TCGA-CC-A7IG-01 12 102120301 102120301 A G CHPT1 Intron 0.69 TCGA-CC-A7IG-01 12 114823367 114823367 C A TBX5 Silent p.T223T 0.24 TCGA-CC-A7IG-01 12 11546691 11546692 - TTG PRB2 In_Frame_Ins p.D106_K107insN 0.08 TCGA-CC-A7IG-01 12 123070262 123070262 A T KNTC1 Missense_Mutation p.E1205V 0.46 deleterious(0) benign(0.31) TCGA-CC-A7IG-01 12 124354994 124354994 A T DNAH10 Missense_Mutation p.Y2416F 0.23 possibly_damaging(0.861) TCGA-CC-A7IG-01 12 128899810 128899810 G C TMEM132C Missense_Mutation p.A207P 0.55 tolerated(1) benign(0.002) TCGA-CC-A7IG-01 12 51890828 51890828 C G SLC4A8 Missense_Mutation p.L1001V 0.09 deleterious(0.01) possibly_damaging(0.448) TCGA-CC-A7IG-01 12 56365394 56365394 C G CDK2 Silent p.P294P 0.31 TCGA-CC-A7IG-01 12 63042384 63042384 C A PPM1H Missense_Mutation p.R477L 0.47 deleterious(0.03) probably_damaging(0.909) TCGA-CC-A7IG-01 13 103518669 103518669 C G BIVM-ERCC5 Missense_Mutation p.Q1179E 0.18 tolerated(0.23) possibly_damaging(0.764) TCGA-CC-A7IG-01 13 111164624 111164624 T G COL4A2 3'UTR 0.29 TCGA-CC-A7IG-01 13 112723901 112723901 C G SOX1 3'UTR 0.06 TCGA-CC-A7IG-01 13 39262451 39262451 G A FREM2 Missense_Mutation p.A324T 0.75 deleterious(0.02) possibly_damaging(0.703) TCGA-CC-A7IG-01 13 43543304 43543304 T A EPSTI1 Missense_Mutation p.Q86L 0.62 deleterious(0) benign(0.407) TCGA-CC-A7IG-01 13 49039196 49039228 GGTCTTCATGCAGAGACTGAAAACAAATATTTT - RB1 In_Frame_Del p.V759_L769del 0.51 TCGA-CC-A7IG-01 14 102482330 102482330 C A DYNC1H1 Silent p.S2460S 0.10 TCGA-CC-A7IG-01 14 106866612 106866612 C T IGHV3-38 Missense_Mutation p.V48I 0.22 deleterious_low_confidence(0.01) benign(0.003) TCGA-CC-A7IG-01 14 21820768 21820768 T C SUPT16H 3'UTR 0.38 TCGA-CC-A7IG-01 15 20658996 20658996 C T HERC2P3 RNA 0.28 TCGA-CC-A7IG-01 15 24920834 24920834 C A NPAP1 5'UTR 0.45 TCGA-CC-A7IG-01 15 28377352 28377352 G A HERC2 Missense_Mutation p.A4155V 0.41 probably_damaging(0.989) TCGA-CC-A7IG-01 15 33954429 33954429 C T RYR3 Silent p.S1566S 0.12 TCGA-CC-A7IG-01 15 42059545 42059545 G T MGA 3'UTR 0.25 TCGA-CC-A7IG-01 15 44158353 44158353 G T WDR76 Silent p.L548L 0.40 TCGA-CC-A7IG-01 15 79058475 79058475 G T ADAMTS7 Missense_Mutation p.L1260M 0.70 tolerated(0.14) possibly_damaging(0.472) TCGA-CC-A7IG-01 15 90190176 90190176 G T KIF7 Missense_Mutation p.S558Y 0.59 deleterious(0.01) benign(0.396) TCGA-CC-A7IG-01 16 19867989 19867989 G A IQCK 3'UTR 0.37 TCGA-CC-A7IG-01 16 29802318 29802318 G T KIF22 Intron 0.39 TCGA-CC-A7IG-01 17 1657772 1657772 T C SERPINF2 Silent p.L474L 0.76 TCGA-CC-A7IG-01 17 17697493 17697493 G T RAI1 Missense_Mutation p.A411S 0.62 tolerated(0.75) benign(0.008) TCGA-CC-A7IG-01 17 27044319 27044319 C T RAB34 Intron 0.22 TCGA-CC-A7IG-01 17 29325932 29325932 G T RNF135 Missense_Mutation p.G341V 0.48 deleterious(0) probably_damaging(0.994) TCGA-CC-A7IG-01 17 33288615 33288615 G T ZNF830 Silent p.P10P 0.41 TCGA-CC-A7IG-01 17 33521395 33521395 G A SLC35G3 5'UTR 0.35 TCGA-CC-A7IG-01 17 41738808 41738808 G A MEOX1 Missense_Mutation p.A32V 0.41 deleterious(0.04) benign(0.008) TCGA-CC-A7IG-01 17 42453683 42453683 G C ITGA2B Missense_Mutation p.L781V 0.45 deleterious(0.05) probably_damaging(0.98) TCGA-CC-A7IG-01 17 43884410 43884410 C T CRHR1 Missense_Mutation p.A23V 0.48 tolerated(0.11) benign(0.06) TCGA-CC-A7IG-01 17 61768464 61768464 G A MAP3K3 Silent p.E436E 0.42 TCGA-CC-A7IG-01 17 62891240 62891240 G C LRRC37A3 Missense_Mutation p.H712Q 0.42 tolerated(0.22) benign(0.065) TCGA-CC-A7IG-01 17 6511774 6511774 G C KIAA0753 Missense_Mutation p.L575V 0.74 tolerated(0.24) benign(0.024) TCGA-CC-A7IG-01 17 7077199 7077199 C A ASGR1 Intron 0.74 TCGA-CC-A7IG-01 17 72959876 72959876 C A HID1 Missense_Mutation p.G116C 0.34 deleterious(0) possibly_damaging(0.618) TCGA-CC-A7IG-01 17 7578188 7578188 C A TP53 Nonsense_Mutation p.E221* 0.70 TCGA-CC-A7IG-01 17 77922702 77922702 C A TBC1D16 Missense_Mutation p.G504W 0.14 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IG-01 17 80333246 80333246 C A UTS2R Missense_Mutation p.A349D 0.50 tolerated(0.62) benign(0.024) TCGA-CC-A7IG-01 18 14538244 14538244 C T POTEC Missense_Mutation p.A176T 0.11 deleterious(0) probably_damaging(0.989) TCGA-CC-A7IG-01 18 21422647 21422647 A T LAMA3 Missense_Mutation p.E1179V 0.42 possibly_damaging(0.517) TCGA-CC-A7IG-01 18 31523091 31523097 CCAAGAT - NOL4 Frame_Shift_Del p.I492Lfs*68 0.28 TCGA-CC-A7IG-01 18 43418741 43418741 G T SIGLEC15 Silent p.A185A 0.54 TCGA-CC-A7IG-01 18 43796312 43796312 A T C18orf25 Nonsense_Mutation p.K156* 0.39 TCGA-CC-A7IG-01 19 11834023 11834023 C G ZNF823 Missense_Mutation p.G109A 0.20 tolerated(0.51) possibly_damaging(0.708) TCGA-CC-A7IG-01 19 13264628 13264628 G T IER2 Missense_Mutation p.D210Y 0.44 deleterious(0) probably_damaging(1) TCGA-CC-A7IG-01 19 17487766 17487766 C T PLVAP Missense_Mutation p.R111H 0.08 deleterious(0.01) probably_damaging(0.994) TCGA-CC-A7IG-01 19 17942056 17942056 C T JAK3 Missense_Mutation p.G987S 0.47 tolerated(0.05) probably_damaging(0.961) TCGA-CC-A7IG-01 19 21132144 21132144 C A ZNF85 Missense_Mutation p.T275N 0.20 tolerated(0.32) benign(0.061) TCGA-CC-A7IG-01 19 22575415 22575415 T C ZNF98 Missense_Mutation p.K208E 0.50 deleterious(0.02) probably_damaging(0.967) TCGA-CC-A7IG-01 19 22941607 22941607 G A ZNF99 Silent p.P368P 0.24 TCGA-CC-A7IG-01 19 24310794 24310794 A C ZNF254 3'UTR 0.53 TCGA-CC-A7IG-01 19 35624619 35624619 C A LGI4 Missense_Mutation p.G98C 0.48 deleterious(0) probably_damaging(1) TCGA-CC-A7IG-01 19 36297613 36297613 C A PRODH2 Silent p.G342G 0.52 TCGA-CC-A7IG-01 19 39001379 39001379 G T RYR1 Missense_Mutation p.S3027I 0.43 benign(0.267) TCGA-CC-A7IG-01 19 39001380 39001380 C A RYR1 Missense_Mutation p.S3027R 0.44 benign(0.404) TCGA-CC-A7IG-01 19 4186390 4186390 G T ANKRD24 5'UTR 0.42 TCGA-CC-A7IG-01 19 43969693 43969693 C A LYPD3 Missense_Mutation p.A11S 0.39 tolerated(0.11) benign(0.06) TCGA-CC-A7IG-01 19 49973755 49973755 A T ALDH16A1 3'UTR 0.63 TCGA-CC-A7IG-01 19 50216937 50216937 G A CPT1C 3'UTR 0.53 TCGA-CC-A7IG-01 19 5223017 5223017 C T PTPRS Missense_Mutation p.R929H 0.53 deleterious(0.04) benign(0.001) TCGA-CC-A7IG-01 19 55396884 55396884 G A FCAR Missense_Mutation p.R103K 0.32 tolerated(0.23) benign(0.031) TCGA-CC-A7IG-01 19 58574854 58574854 G T ZNF135 Missense_Mutation p.E79D 0.46 deleterious(0.01) probably_damaging(0.98) TCGA-CC-A7IG-01 19 6147641 6147641 C G ACSBG2 Missense_Mutation p.N84K 0.23 tolerated(1) benign(0.022) TCGA-CC-A7IG-01 1 152733416 152733416 G T KPRP Missense_Mutation p.R451L 0.92 tolerated(0.15) possibly_damaging(0.858) TCGA-CC-A7IG-01 1 155292170 155292170 G A RUSC1 Silent p.R202R 0.85 TCGA-CC-A7IG-01 1 158517456 158517456 C G OR6Y1 Missense_Mutation p.G147A 0.91 tolerated(0.56) benign(0.014) TCGA-CC-A7IG-01 1 162344018 162344018 G T C1orf111 Silent p.I202I 0.34 TCGA-CC-A7IG-01 1 16946512 16946512 G A RP5-1182A14.5 3'Flank 0.29 TCGA-CC-A7IG-01 1 210407337 210407337 T A SERTAD4 Intron 0.33 TCGA-CC-A7IG-01 1 220406172 220406172 C A RAB3GAP2 Missense_Mutation p.G50V 0.84 deleterious_low_confidence(0.03) possibly_damaging(0.628) TCGA-CC-A7IG-01 1 32256443 32256443 G A SPOCD1 Missense_Mutation p.H1138Y 0.73 tolerated(0.06) benign(0.063) TCGA-CC-A7IG-01 1 40706226 40706226 A C RLF 3'UTR 0.81 TCGA-CC-A7IG-01 1 60324102 60324102 A G HOOK1 Silent p.R415R 0.81 TCGA-CC-A7IG-01 1 6635435 6635435 C T TAS1R1 Nonsense_Mutation p.R415* 0.71 TCGA-CC-A7IG-01 20 17240976 17240976 A G PCSK2 Missense_Mutation p.E90G 0.53 tolerated(0.11) benign(0.024) TCGA-CC-A7IG-01 20 23546707 23546707 T C CST9L Silent p.V86V 0.44 TCGA-CC-A7IG-01 20 30522615 30522615 C T TTLL9 Nonsense_Mutation p.Q310* 0.24 TCGA-CC-A7IG-01 20 31189326 31189326 C G RP11-410N8.4 5'UTR 0.44 TCGA-CC-A7IG-01 20 31768351 31768351 G T BPIFA2 Silent p.L245L 0.26 TCGA-CC-A7IG-01 20 56140768 56140769 GA - PCK1 Frame_Shift_Del p.K594Vfs*13 0.32 TCGA-CC-A7IG-01 20 57428698 57428698 G T GNAS Silent p.G126G 0.59 TCGA-CC-A7IG-01 20 61477012 61477012 G C TCFL5 Intron 0.48 TCGA-CC-A7IG-01 21 19687499 19687499 G C TMPRSS15 Missense_Mutation p.L666V 0.41 tolerated(0.41) benign(0.012) TCGA-CC-A7IG-01 21 45504036 45504036 C T TRAPPC10 Silent p.L758L 0.28 TCGA-CC-A7IG-01 22 20796021 20796021 C G KLHL22 3'UTR 0.40 TCGA-CC-A7IG-01 22 22724018 22724018 G T IGLV7-46 Translation_Start_Site p.M1? 0.46 TCGA-CC-A7IG-01 22 24224833 24224833 G T SLC2A11 Silent p.S298S 0.61 TCGA-CC-A7IG-01 22 26164107 26164107 C G MYO18B Missense_Mutation p.P75R 0.26 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-CC-A7IG-01 22 30685503 30685503 C G GATSL3 5'UTR 0.40 TCGA-CC-A7IG-01 22 46930838 46930838 T C CELSR1 Missense_Mutation p.I744V 0.32 tolerated(0.35) benign(0.371) TCGA-CC-A7IG-01 2 109964184 109964184 C A SH3RF3 Missense_Mutation p.P210T 0.09 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IG-01 2 1241790 1241790 G A SNTG2 Splice_Site p.X283_splice 0.30 TCGA-CC-A7IG-01 2 131523861 131523861 G C AMER3 3'UTR 0.81 TCGA-CC-A7IG-01 2 135757513 135757513 T A MAP3K19 Missense_Mutation p.E103V 0.10 deleterious(0.01) possibly_damaging(0.489) TCGA-CC-A7IG-01 2 135757514 135757514 C A MAP3K19 Nonsense_Mutation p.E103* 0.09 TCGA-CC-A7IG-01 2 162719562 162719562 G T SLC4A10 Missense_Mutation p.M252I 0.83 tolerated(0.15) benign(0.048) TCGA-CC-A7IG-01 2 171092541 171092541 C A MYO3B Missense_Mutation p.A215D 0.22 deleterious(0) possibly_damaging(0.783) TCGA-CC-A7IG-01 2 176988912 176988912 G T HOXD9 3'UTR 0.85 TCGA-CC-A7IG-01 2 21246408 21246408 C A APOB Nonsense_Mutation p.E865* 0.64 TCGA-CC-A7IG-01 2 220404347 220404347 C T CHPF Missense_Mutation p.E696K 0.31 tolerated(0.85) benign(0.01) TCGA-CC-A7IG-01 2 228846270 228846270 C G SPHKAP 3'UTR 0.36 TCGA-CC-A7IG-01 2 27156187 27156187 C G DPYSL5 Missense_Mutation p.A259G 0.49 tolerated(0.11) benign(0.109) TCGA-CC-A7IG-01 2 36808548 36808548 C T FEZ2 Missense_Mutation p.M173I 0.09 deleterious(0) probably_damaging(0.954) TCGA-CC-A7IG-01 2 65300211 65300211 G A CEP68 Intron 0.37 TCGA-CC-A7IG-01 2 99013401 99013401 G A CNGA3 Missense_Mutation p.E590K 0.32 deleterious(0) probably_damaging(0.981) TCGA-CC-A7IG-01 3 108203979 108203979 T C MYH15 Missense_Mutation p.Q378R 0.41 deleterious(0.01) benign(0.081) TCGA-CC-A7IG-01 3 112300032 112300032 C T SLC35A5 Silent p.S356S 0.31 TCGA-CC-A7IG-01 3 112326103 112326103 C T CCDC80 Missense_Mutation p.G809D 0.14 deleterious(0) probably_damaging(0.995) TCGA-CC-A7IG-01 3 126062613 126062613 T A KLF15 Missense_Mutation p.H403L 0.25 deleterious(0.02) benign(0.01) TCGA-CC-A7IG-01 3 127396682 127396682 C T ABTB1 Missense_Mutation p.T342I 0.08 tolerated(0.13) benign(0.324) TCGA-CC-A7IG-01 3 130103715 130103715 C A COL6A5 Missense_Mutation p.Q457K 0.52 deleterious(0.02) benign(0.063) TCGA-CC-A7IG-01 3 130103724 130103724 C G COL6A5 Missense_Mutation p.Q460E 0.50 tolerated(1) benign(0.02) TCGA-CC-A7IG-01 3 138738602 138738602 C A PRR23B 3'UTR 0.57 TCGA-CC-A7IG-01 3 150127752 150127752 C T TSC22D2 Silent p.S205S 0.22 TCGA-CC-A7IG-01 3 167277885 167277885 C T WDR49 Silent p.R206R 0.25 TCGA-CC-A7IG-01 3 184295208 184295208 C A EPHB3 Silent p.R478R 0.53 TCGA-CC-A7IG-01 3 197687166 197687166 G T LMLN Missense_Mutation p.G25V 0.28 deleterious_low_confidence(0.01) benign(0.116) TCGA-CC-A7IG-01 3 45153829 45153829 C A CDCP1 Missense_Mutation p.S134I 0.58 deleterious(0.05) possibly_damaging(0.533) TCGA-CC-A7IG-01 3 47043973 47043973 G T NBEAL2 Missense_Mutation p.R1755L 0.59 deleterious(0) benign(0.048) TCGA-CC-A7IG-01 3 47155493 47155493 A T SETD2 Missense_Mutation p.S1530T 0.07 deleterious(0.03) probably_damaging(0.985) TCGA-CC-A7IG-01 3 4888041 4888041 T C ITPR1 3'UTR 0.23 TCGA-CC-A7IG-01 3 50649183 50649183 C A CISH 5'UTR 0.22 TCGA-CC-A7IG-01 3 93755396 93755396 G A ARL13B Missense_Mutation p.E163K 0.10 tolerated(0.07) possibly_damaging(0.893) TCGA-CC-A7IG-01 4 145627786 145627786 T C HHIP Missense_Mutation p.I312T 0.08 deleterious(0.01) benign(0.001) TCGA-CC-A7IG-01 4 190881979 190881979 G A FRG1 Missense_Mutation p.C205Y 0.26 deleterious(0.03) benign(0.048) TCGA-CC-A7IG-01 4 2273119 2273119 G A ZFYVE28 Silent p.D817D 0.25 TCGA-CC-A7IG-01 4 40351330 40351330 G T CHRNA9 Missense_Mutation p.G266V 0.54 deleterious(0) probably_damaging(1) TCGA-CC-A7IG-01 4 55156636 55156636 A G PDGFRA Missense_Mutation p.S1013G 0.12 tolerated(0.17) probably_damaging(0.993) TCGA-CC-A7IG-01 4 7705958 7705958 G T SORCS2 Silent p.S605S 0.31 TCGA-CC-A7IG-01 5 135561777 135561777 T A TRPC7 Missense_Mutation p.K736M 0.34 deleterious(0.02) benign(0.401) TCGA-CC-A7IG-01 5 137766109 137766109 C T KDM3B Missense_Mutation p.H1689Y 0.08 deleterious(0.01) probably_damaging(0.989) TCGA-CC-A7IG-01 5 140180920 140180920 C A PCDHA3 Silent p.G46G 0.30 TCGA-CC-A7IG-01 5 140222940 140222940 G A PCDHA8 Silent p.A678A 0.59 TCGA-CC-A7IG-01 5 140562729 140562730 - A PCDHB16 Frame_Shift_Ins p.L200Afs*32 0.28 TCGA-CC-A7IG-01 5 140573693 140573693 C A PCDHB10 Missense_Mutation p.A523D 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.599) TCGA-CC-A7IG-01 5 1406399 1406399 A T SLC6A3 Silent p.V501V 0.30 TCGA-CC-A7IG-01 5 156890181 156890181 C A NIPAL4 Missense_Mutation p.S101R 0.29 tolerated(0.12) benign(0.001) TCGA-CC-A7IG-01 5 157286123 157286123 C T CLINT1 5'UTR 0.28 TCGA-CC-A7IG-01 5 169081429 169081429 C A DOCK2 Missense_Mutation p.S22R 0.32 tolerated(0.69) benign(0.006) TCGA-CC-A7IG-01 5 475176 475176 G T SLC9A3 Missense_Mutation p.L775M 0.45 deleterious(0.01) possibly_damaging(0.777) TCGA-CC-A7IG-01 5 53450429 53450429 C T ARL15 Silent p.L78L 0.47 TCGA-CC-A7IG-01 5 65371047 65371047 G T ERBB2IP Missense_Mutation p.A1325S 0.49 tolerated(0.41) benign(0.007) TCGA-CC-A7IG-01 5 82816787 82816787 T A VCAN Missense_Mutation p.S888T 0.43 tolerated(0.09) possibly_damaging(0.584) TCGA-CC-A7IG-01 6 108645051 108645051 G T LACE1 Missense_Mutation p.E54D 0.86 tolerated(0.2) benign(0.002) TCGA-CC-A7IG-01 6 16145305 16145305 T A MYLIP Silent p.V335V 0.46 TCGA-CC-A7IG-01 6 167549831 167549831 T C CCR6 Missense_Mutation p.L38S 0.73 tolerated(0.25) benign(0.065) TCGA-CC-A7IG-01 6 26017266 26017266 G A HIST1H1A 3'UTR 0.56 TCGA-CC-A7IG-01 6 32151317 32151317 C T RNF5 3'Flank 0.42 TCGA-CC-A7IG-01 6 39864686 39864686 C A DAAM2 Missense_Mutation p.R814S 0.48 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IG-01 6 44198616 44198616 C T SLC29A1 Silent p.L252L 0.56 TCGA-CC-A7IG-01 6 6248626 6248626 G T F13A1 Nonsense_Mutation p.C239* 0.42 TCGA-CC-A7IG-01 6 88374575 88374575 G C ORC3 Missense_Mutation p.E651Q 0.78 tolerated(0.52) benign(0.076) TCGA-CC-A7IG-01 7 100361473 100361473 C G ZAN Missense_Mutation p.S1344C 0.34 unknown(0) TCGA-CC-A7IG-01 7 110303562 110303562 T C IMMP2L 3'UTR 0.56 TCGA-CC-A7IG-01 7 121652602 121652602 T A PTPRZ1 Missense_Mutation p.L1168I 0.37 deleterious_low_confidence(0.04) benign(0.008) TCGA-CC-A7IG-01 7 141955440 141955440 C A PRSS58 Missense_Mutation p.V32F 0.43 deleterious(0) probably_damaging(0.93) TCGA-CC-A7IG-01 7 144059794 144059794 C G ARHGEF5 Missense_Mutation p.S11C 0.14 deleterious(0.05) benign(0.012) TCGA-CC-A7IG-01 7 149523554 149523554 A G SSPO RNA 0.47 TCGA-CC-A7IG-01 7 158437057 158437057 T C NCAPG2 Missense_Mutation p.R1102G 0.19 tolerated(0.06) benign(0.013) TCGA-CC-A7IG-01 7 43484630 43484630 C A HECW1 Missense_Mutation p.P620H 0.37 tolerated_low_confidence(0.06) benign(0.001) TCGA-CC-A7IG-01 7 65540876 65540876 G C ASL Intron 0.23 TCGA-CC-A7IG-01 7 82546021 82546021 T G PCLO Missense_Mutation p.K3761Q 0.31 unknown(0) TCGA-CC-A7IG-01 7 82583500 82583500 C A PCLO Missense_Mutation p.A2257S 0.33 unknown(0) TCGA-CC-A7IG-01 7 82764880 82764880 C A PCLO Missense_Mutation p.K662N 0.46 unknown(0) TCGA-CC-A7IG-01 7 97486092 97486092 G C ASNS Missense_Mutation p.L314V 0.28 tolerated(0.4) benign(0.034) TCGA-CC-A7IG-01 7 99820268 99820268 A G GATS Intron 0.30 TCGA-CC-A7IG-01 8 125463085 125463085 T A TRMT12 5'UTR 0.31 TCGA-CC-A7IG-01 8 133899348 133899348 C A TG Missense_Mutation p.F577L 0.25 deleterious(0) probably_damaging(0.997) TCGA-CC-A7IG-01 8 143623348 143623348 C T BAI1 Silent p.G1251G 0.28 TCGA-CC-A7IG-01 8 144462150 144462150 G A RHPN1 Missense_Mutation p.G366D 0.19 tolerated(0.22) possibly_damaging(0.65) TCGA-CC-A7IG-01 8 3141773 3141773 C T CSMD1 Missense_Mutation p.S1349N 0.61 possibly_damaging(0.476) TCGA-CC-A7IG-01 8 6302684 6302684 A G MCPH1 Missense_Mutation p.I481V 0.44 tolerated(0.53) benign(0.006) TCGA-CC-A7IG-01 8 68334896 68334896 G T CPA6 Missense_Mutation p.A386D 0.13 deleterious(0) probably_damaging(1) TCGA-CC-A7IG-01 8 71087033 71087033 C A NCOA2 Missense_Mutation p.Q107H 0.23 deleterious(0.03) benign(0.214) TCGA-CC-A7IG-01 8 91094853 91094853 C - CALB1 Frame_Shift_Del p.A25Lfs*15 0.26 TCGA-CC-A7IG-01 9 72723140 72723140 T C MAMDC2 Silent p.Y54Y 0.52 TCGA-CC-A7IG-01 9 73151774 73151774 T C TRPM3 Missense_Mutation p.M1407V 0.41 tolerated_low_confidence(0.31) benign(0.103) TCGA-CC-A7IG-01 X 101818277 101818277 C A NXF4 RNA 0.79 TCGA-CC-A7IG-01 X 103499051 103499051 T C ESX1 Missense_Mutation p.Q97R 0.09 tolerated_low_confidence(0.5) benign(0.043) TCGA-CC-A7IG-01 X 128893170 128893170 A T XPNPEP2 Missense_Mutation p.D461V 0.88 deleterious(0) probably_damaging(0.997) TCGA-CC-A7IG-01 X 47065468 47065468 A G UBA1 Missense_Mutation p.Q566R 0.71 tolerated(0.07) benign(0.158) TCGA-CC-A7IH-01 10 102849344 102849344 G T TLX1NB Silent p.R107R 0.58 TCGA-CC-A7IH-01 10 104268957 104268957 A T SUFU Missense_Mutation p.S72C 0.67 deleterious(0) probably_damaging(0.997) TCGA-CC-A7IH-01 10 105350031 105350031 T A NEURL1 Missense_Mutation p.Y543N 0.61 tolerated(0.67) probably_damaging(1) TCGA-CC-A7IH-01 10 11207586 11207586 G A CELF2 Missense_Mutation p.G71E 0.60 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 10 112724768 112724768 A - SHOC2 Frame_Shift_Del p.S218Afs*28 0.23 TCGA-CC-A7IH-01 10 115535616 115535616 G T PLEKHS1 Missense_Mutation p.G341V 0.04 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 10 118969679 118969679 A G KCNK18 Missense_Mutation p.I342V 0.27 tolerated(0.44) benign(0.074) TCGA-CC-A7IH-01 10 124034559 124034559 C G BTBD16 5'UTR 0.21 TCGA-CC-A7IH-01 10 124034593 124034593 A G BTBD16 5'UTR 0.23 TCGA-CC-A7IH-01 10 124339354 124339354 C A DMBT1 Missense_Mutation p.P314T 0.27 tolerated(0.14) probably_damaging(0.995) TCGA-CC-A7IH-01 10 134910562 134910562 C A GPR123 Missense_Mutation p.L30I 0.61 deleterious(0.04) possibly_damaging(0.764) TCGA-CC-A7IH-01 10 16553155 16553155 T C PTER Missense_Mutation p.L317P 0.21 deleterious(0.02) benign(0.35) TCGA-CC-A7IH-01 10 21120179 21120179 G T NEBL Missense_Mutation p.S539R 0.56 tolerated(0.53) benign(0.197) TCGA-CC-A7IH-01 10 21178773 21178773 C A NEBL Splice_Site p.X86_splice 0.57 TCGA-CC-A7IH-01 10 24833078 24833078 A T KIAA1217 Missense_Mutation p.R1627W 0.52 deleterious(0) possibly_damaging(0.641) TCGA-CC-A7IH-01 10 25010790 25010790 A G ARHGAP21 Silent p.D13D 0.61 TCGA-CC-A7IH-01 10 25145922 25145922 A T PRTFDC1 Missense_Mutation p.D142E 0.07 deleterious(0) benign(0.111) TCGA-CC-A7IH-01 10 25226147 25226147 A G PRTFDC1 Missense_Mutation p.M102T 0.26 tolerated(0.14) benign(0.015) TCGA-CC-A7IH-01 10 26377316 26377316 G T MYO3A Missense_Mutation p.R515L 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-CC-A7IH-01 10 26465717 26465717 G T MYO3A Missense_Mutation p.G1461C 0.04 deleterious_low_confidence(0) possibly_damaging(0.738) TCGA-CC-A7IH-01 10 27306632 27306632 T C ANKRD26 Silent p.L1435L 0.59 TCGA-CC-A7IH-01 10 34759158 34759158 G A PARD3 Missense_Mutation p.P146L 0.27 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 10 42831511 42831511 T A RP11-313J2.1 RNA 0.21 TCGA-CC-A7IH-01 10 49982657 49982657 C A WDFY4 Nonsense_Mutation p.S903* 0.30 TCGA-CC-A7IH-01 10 54528161 54528161 A C MBL2 Silent p.S161S 0.31 TCGA-CC-A7IH-01 10 5789185 5789185 G T FAM208B Silent p.V1267V 0.09 TCGA-CC-A7IH-01 10 60028962 60028962 T G CISD1 5'UTR 0.50 TCGA-CC-A7IH-01 10 61014197 61014197 T G FAM13C Missense_Mutation p.K415Q 0.31 deleterious(0.04) possibly_damaging(0.721) TCGA-CC-A7IH-01 10 61443920 61443920 A G SLC16A9 Missense_Mutation p.F44L 0.05 deleterious(0) possibly_damaging(0.855) TCGA-CC-A7IH-01 10 61829030 61829030 G T ANK3 Missense_Mutation p.T3870N 0.58 benign(0.001) TCGA-CC-A7IH-01 10 63525870 63525870 T A C10orf107 3'UTR 0.39 TCGA-CC-A7IH-01 10 70141014 70141014 T A RUFY2 Missense_Mutation p.N396I 0.31 deleterious(0) probably_damaging(0.94) TCGA-CC-A7IH-01 10 71917592 71917592 T G SAR1A Silent p.A92A 0.35 TCGA-CC-A7IH-01 10 73591653 73591653 T C PSAP Missense_Mutation p.K67E 0.15 deleterious(0) possibly_damaging(0.483) TCGA-CC-A7IH-01 10 75525661 75525661 A T SEC24C Silent p.V490V 0.30 TCGA-CC-A7IH-01 10 81371581 81371581 C A SFTPA1 Silent p.A15A 0.36 TCGA-CC-A7IH-01 10 85970915 85970915 T A CDHR1 Silent p.A493A 0.31 TCGA-CC-A7IH-01 10 85992413 85992413 C A LRIT1 Missense_Mutation p.R381M 0.58 deleterious(0) probably_damaging(0.984) TCGA-CC-A7IH-01 10 88441277 88441277 C A LDB3 Missense_Mutation p.P136T 0.30 tolerated(0.37) benign(0.007) TCGA-CC-A7IH-01 10 91174557 91174558 - GA IFIT5 Frame_Shift_Ins p.S2Rfs*9 0.40 TCGA-CC-A7IH-01 11 100863739 100863739 A G TMEM133 3'UTR 0.35 TCGA-CC-A7IH-01 11 101375282 101375282 C A TRPC6 Missense_Mutation p.A140S 0.40 tolerated(0.08) probably_damaging(0.998) TCGA-CC-A7IH-01 11 102991298 102991298 T G DYNC2H1 Missense_Mutation p.N374K 0.42 possibly_damaging(0.535) TCGA-CC-A7IH-01 11 103026215 103026215 A T DYNC2H1 Missense_Mutation p.K1243N 0.38 benign(0.002) TCGA-CC-A7IH-01 11 1031239 1031239 G C MUC6 Nonsense_Mutation p.Y168* 0.40 TCGA-CC-A7IH-01 11 107526788 107526788 A G ELMOD1 Silent p.T276T 0.51 TCGA-CC-A7IH-01 11 108264018 108264018 A G C11orf65 Silent p.A216A 0.37 TCGA-CC-A7IH-01 11 108709284 108709284 G A DDX10 Missense_Mutation p.E693K 0.34 deleterious(0.01) benign(0.146) TCGA-CC-A7IH-01 11 1087958 1087958 T C MUC2 Missense_Mutation p.C1145R 0.40 probably_damaging(0.999) TCGA-CC-A7IH-01 11 117109396 117109396 A T RNF214 Nonsense_Mutation p.R63* 0.42 TCGA-CC-A7IH-01 11 117387274 117387274 A T DSCAML1 Missense_Mutation p.V624E 0.25 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IH-01 11 123814484 123814484 T A OR6T1 Missense_Mutation p.H21L 0.46 tolerated(0.65) benign(0.004) TCGA-CC-A7IH-01 11 125891234 125891234 A G CDON Silent p.S86S 0.27 TCGA-CC-A7IH-01 11 131781280 131781280 C A NTM 5'Flank 0.50 TCGA-CC-A7IH-01 11 133807314 133807314 G A IGSF9B Silent p.S212S 0.34 TCGA-CC-A7IH-01 11 1605913 1605913 A G KRTAP5-1 Silent p.S189S 0.11 TCGA-CC-A7IH-01 11 1629498 1629498 A T KRTAP5-3 Missense_Mutation p.C40S 0.42 tolerated(0.16) unknown(0) TCGA-CC-A7IH-01 11 1718512 1718532 GGCTGTGGGGGCTGTGGCTCT - KRTAP5-6 In_Frame_Del p.G20_S26del 0.31 TCGA-CC-A7IH-01 11 19170802 19170802 A C ZDHHC13 Missense_Mutation p.E148A 0.38 deleterious(0) possibly_damaging(0.832) TCGA-CC-A7IH-01 11 19170823 19170823 T A ZDHHC13 Missense_Mutation p.L155Q 0.44 deleterious(0) probably_damaging(0.998) TCGA-CC-A7IH-01 11 20652295 20652295 A C SLC6A5 Missense_Mutation p.I520L 0.39 deleterious(0) probably_damaging(0.964) TCGA-CC-A7IH-01 11 2153979 2153979 T C IGF2 3'UTR 0.62 TCGA-CC-A7IH-01 11 28119476 28119476 C A KIF18A Missense_Mutation p.D7Y 0.41 deleterious(0) possibly_damaging(0.855) TCGA-CC-A7IH-01 11 31805232 31805232 A G ELP4 3'UTR 0.41 TCGA-CC-A7IH-01 11 33358716 33358716 G T HIPK3 Missense_Mutation p.M439I 0.45 tolerated(0.09) benign(0.001) TCGA-CC-A7IH-01 11 33628353 33628353 A T KIAA1549L Silent p.A1385A 0.39 TCGA-CC-A7IH-01 11 34515128 34515128 T A ELF5 Missense_Mutation p.S95C 0.47 deleterious(0) possibly_damaging(0.458) TCGA-CC-A7IH-01 11 36598645 36598645 T A RAG1 3'UTR 0.34 TCGA-CC-A7IH-01 11 36601139 36601139 G A RAG1 3'UTR 0.37 TCGA-CC-A7IH-01 11 4967735 4967735 A G OR51A4 Missense_Mutation p.I199T 0.32 deleterious(0.01) possibly_damaging(0.899) TCGA-CC-A7IH-01 11 5020779 5020779 A G OR51L1 Silent p.L189L 0.44 TCGA-CC-A7IH-01 11 5221747 5221747 G T OR51V1 Missense_Mutation p.P62T 0.41 deleterious(0.04) possibly_damaging(0.507) TCGA-CC-A7IH-01 11 55065414 55065414 A G TRIM51HP RNA 0.35 TCGA-CC-A7IH-01 11 55873220 55873220 G T OR8H2 Missense_Mutation p.K234N 0.40 deleterious(0) probably_damaging(0.978) TCGA-CC-A7IH-01 11 55904587 55904587 G T OR8J3 Missense_Mutation p.A203E 0.43 deleterious(0.01) probably_damaging(0.911) TCGA-CC-A7IH-01 11 56113774 56113774 T A OR8K1 Missense_Mutation p.M87K 0.36 deleterious_low_confidence(0) benign(0.308) TCGA-CC-A7IH-01 11 59623413 59623413 T A TCN1 Missense_Mutation p.Q289L 0.26 deleterious(0) probably_damaging(0.995) TCGA-CC-A7IH-01 11 61675695 61675695 T C RAB3IL1 Missense_Mutation p.H32R 0.72 tolerated_low_confidence(0.7) benign(0.001) TCGA-CC-A7IH-01 11 62572911 62572911 G C NXF1 5'UTR 0.88 TCGA-CC-A7IH-01 11 6262882 6262882 A T CNGA4 Missense_Mutation p.D380V 0.38 deleterious(0) probably_damaging(0.998) TCGA-CC-A7IH-01 11 62886696 62886696 T A SLC22A24 Silent p.A206A 0.37 TCGA-CC-A7IH-01 11 6292239 6292239 A G CCKBR Splice_Site p.X271_splice 0.61 TCGA-CC-A7IH-01 11 64527129 64527129 T C PYGM Missense_Mutation p.K81R 0.76 tolerated(0.06) possibly_damaging(0.657) TCGA-CC-A7IH-01 11 64575092 64575092 T C MEN1 Missense_Mutation p.M244V 0.74 deleterious(0.03) benign(0.312) TCGA-CC-A7IH-01 11 66029592 66029592 A T KLC2 Splice_Site p.X154_splice 0.40 TCGA-CC-A7IH-01 11 67047308 67047308 A T ADRBK1 Splice_Site p.X148_splice 0.47 TCGA-CC-A7IH-01 11 67223820 67223820 A T CABP4 Missense_Mutation p.S150C 0.04 deleterious(0) possibly_damaging(0.581) TCGA-CC-A7IH-01 11 67274928 67274928 T C CDK2AP2 Missense_Mutation p.Y74C 0.47 deleterious(0) probably_damaging(0.992) TCGA-CC-A7IH-01 11 6806883 6806883 C T OR2AG1 Silent p.T205T 0.41 TCGA-CC-A7IH-01 11 6867208 6867208 G T OR10A5 Missense_Mutation p.A99S 0.42 deleterious(0.01) benign(0.056) TCGA-CC-A7IH-01 11 73007940 73007940 T A P2RY6 Missense_Mutation p.L126Q 0.22 deleterious(0) probably_damaging(0.985) TCGA-CC-A7IH-01 11 76063253 76063253 A T PRKRIR Missense_Mutation p.I314K 0.37 deleterious(0.02) benign(0.209) TCGA-CC-A7IH-01 11 77775013 77775013 A G THRSP Missense_Mutation p.Q29R 0.48 deleterious(0) possibly_damaging(0.873) TCGA-CC-A7IH-01 11 7981937 7981937 T A NLRP10 Missense_Mutation p.R408W 0.40 deleterious(0.01) possibly_damaging(0.888) TCGA-CC-A7IH-01 11 84634312 84634312 A T DLG2 Intron 0.50 TCGA-CC-A7IH-01 11 85622367 85622411 TTCATGAACTGGAAGCAGAAAATTTGGTGCTTATTGATCAACTAT - CCDC83 In_Frame_Del p.I239_S254delinsT 0.26 TCGA-CC-A7IH-01 11 88338049 88338049 G T GRM5 Missense_Mutation p.L411I 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-CC-A7IH-01 11 88911129 88911129 T A TYR Missense_Mutation p.L3Q 0.47 deleterious(0.01) possibly_damaging(0.83) TCGA-CC-A7IH-01 11 92498202 92498202 T C FAT3 Missense_Mutation p.V1381A 0.40 possibly_damaging(0.685) TCGA-CC-A7IH-01 11 94282423 94282423 A G FUT4 3'UTR 0.42 TCGA-CC-A7IH-01 11 94604010 94604010 C T AMOTL1 3'UTR 0.07 TCGA-CC-A7IH-01 11 9499989 9499989 A T ZNF143 Silent p.T142T 0.29 TCGA-CC-A7IH-01 12 10147839 10147839 T A CLEC1B Missense_Mutation p.I149F 0.32 tolerated(0.07) benign(0.218) TCGA-CC-A7IH-01 12 104025439 104025439 A G STAB2 Missense_Mutation p.Y184C 0.44 deleterious(0.01) possibly_damaging(0.789) TCGA-CC-A7IH-01 12 108008836 108008836 A C BTBD11 Splice_Site p.X634_splice 0.39 TCGA-CC-A7IH-01 12 110421240 110421240 T C GIT2 Silent p.A187A 0.41 TCGA-CC-A7IH-01 12 110565247 110565247 A G IFT81 Missense_Mutation p.Y21C 0.33 deleterious(0) probably_damaging(0.927) TCGA-CC-A7IH-01 12 112688787 112688787 T A HECTD4 Missense_Mutation p.K1089I 0.46 possibly_damaging(0.464) TCGA-CC-A7IH-01 12 11546400 11546400 T A PRB2 Silent p.P204P 0.14 TCGA-CC-A7IH-01 12 116446847 116446847 T C MED13L Silent p.S457S 0.35 TCGA-CC-A7IH-01 12 117710243 117710243 T C NOS1 Missense_Mutation p.T596A 0.41 deleterious(0) probably_damaging(0.989) TCGA-CC-A7IH-01 12 119554788 119554788 A T SRRM4 Missense_Mutation p.S138C 0.41 deleterious_low_confidence(0) unknown(0) TCGA-CC-A7IH-01 12 120271925 120271925 A T CIT Silent p.A208A 0.36 TCGA-CC-A7IH-01 12 122413230 122413230 A G WDR66 Missense_Mutation p.K951R 0.34 tolerated(0.08) benign(0.008) TCGA-CC-A7IH-01 12 12273986 12273986 C A LRP6 3'UTR 0.50 TCGA-CC-A7IH-01 12 126138603 126138603 A G TMEM132B Missense_Mutation p.K862E 0.47 tolerated(0.71) benign(0.004) TCGA-CC-A7IH-01 12 130648002 130648002 A C FZD10 Missense_Mutation p.Q172P 0.42 tolerated(0.38) benign(0.002) TCGA-CC-A7IH-01 12 131456098 131456098 A G GPR133 Missense_Mutation p.S95G 0.46 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-CC-A7IH-01 12 131590300 131590300 T A GPR133 Missense_Mutation p.S593T 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-CC-A7IH-01 12 132393332 132393332 G T ULK1 Missense_Mutation p.A154S 0.52 tolerated(1) benign(0.075) TCGA-CC-A7IH-01 12 132423731 132423731 C A PUS1 Missense_Mutation p.A152D 0.47 deleterious(0) probably_damaging(0.992) TCGA-CC-A7IH-01 12 15699336 15699336 A T PTPRO Intron 0.43 TCGA-CC-A7IH-01 12 25267703 25267703 G A CASC1 Nonsense_Mutation p.Q500* 0.39 TCGA-CC-A7IH-01 12 26217535 26217535 G T RASSF8 Missense_Mutation p.A70S 0.41 deleterious(0.04) probably_damaging(0.994) TCGA-CC-A7IH-01 12 27832961 27832961 T A PPFIBP1 Nonsense_Mutation p.L627* 0.52 TCGA-CC-A7IH-01 12 32137297 32137297 A G KIAA1551 Silent p.K1136K 0.38 TCGA-CC-A7IH-01 12 32369200 32369200 C G BICD1 Missense_Mutation p.S78C 0.36 deleterious(0) probably_damaging(0.992) TCGA-CC-A7IH-01 12 32490444 32490444 A G BICD1 Missense_Mutation p.Y755C 0.42 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 12 40760830 40760830 G A LRRK2 Silent p.L2471L 0.39 TCGA-CC-A7IH-01 12 45444721 45444721 C T DBX2 5'UTR 0.51 TCGA-CC-A7IH-01 12 49432023 49432023 T C KMT2D Missense_Mutation p.D3039G 0.43 probably_damaging(0.989) TCGA-CC-A7IH-01 12 5022471 5022471 T A KCNA1 3'UTR 0.03 TCGA-CC-A7IH-01 12 50749396 50749396 A G FAM186A Missense_Mutation p.Y407H 0.47 tolerated(0.35) possibly_damaging(0.534) TCGA-CC-A7IH-01 12 52649863 52649863 G T KRT121P RNA 0.32 TCGA-CC-A7IH-01 12 52913903 52913903 A T KRT5 Missense_Mutation p.Y60N 0.38 deleterious(0) benign(0.068) TCGA-CC-A7IH-01 12 53878895 53878895 G A MAP3K12 Silent p.L362L 0.41 TCGA-CC-A7IH-01 12 56619991 56619991 A G NABP2 Missense_Mutation p.N107D 0.38 deleterious(0) benign(0.321) TCGA-CC-A7IH-01 12 57397645 57397645 C G ZBTB39 Missense_Mutation p.E353Q 0.40 tolerated(0.37) benign(0.358) TCGA-CC-A7IH-01 12 57881756 57881756 G T MARS 5'UTR 0.30 TCGA-CC-A7IH-01 12 6659920 6659920 C T IFFO1 Missense_Mutation p.A291T 0.27 tolerated(0.33) probably_damaging(0.988) TCGA-CC-A7IH-01 12 66638446 66638446 T A IRAK3 Missense_Mutation p.D356E 0.35 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 12 666812 666812 G T B4GALNT3 Missense_Mutation p.D807Y 0.37 deleterious(0) probably_damaging(0.991) TCGA-CC-A7IH-01 12 7026812 7026812 G C ENO2 Silent p.R126R 0.35 TCGA-CC-A7IH-01 12 70953021 70953021 A T PTPRB Intron 0.60 TCGA-CC-A7IH-01 12 72425319 72425319 T C TPH2 Silent p.I439I 0.42 TCGA-CC-A7IH-01 12 75892264 75892264 G T KRR1 3'UTR 0.28 TCGA-CC-A7IH-01 12 78513452 78513452 C G NAV3 Missense_Mutation p.T1159S 0.42 tolerated(0.81) benign(0.207) TCGA-CC-A7IH-01 12 7947412 7947412 C T NANOG Silent p.I213I 0.38 TCGA-CC-A7IH-01 12 80750668 80750668 A T OTOGL Missense_Mutation p.E1989V 0.44 deleterious(0.03) benign(0.204) TCGA-CC-A7IH-01 12 82147865 82147865 G C PPFIA2 Missense_Mutation p.L46V 0.41 tolerated(0.11) possibly_damaging(0.664) TCGA-CC-A7IH-01 12 85518207 85518207 G T LRRIQ1 Missense_Mutation p.S1306I 0.42 tolerated(0.05) benign(0.312) TCGA-CC-A7IH-01 12 88910260 88910260 T C KITLG Missense_Mutation p.K124R 0.50 tolerated(0.23) benign(0.017) TCGA-CC-A7IH-01 12 8990976 8990976 C T A2ML1 Silent p.T300T 0.44 TCGA-CC-A7IH-01 12 9083485 9083485 C A PHC1 Missense_Mutation p.T356K 0.30 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-CC-A7IH-01 12 91348855 91348855 T A CCER1 5'UTR 0.48 TCGA-CC-A7IH-01 12 91445249 91445249 T G KERA Silent p.A311A 0.45 TCGA-CC-A7IH-01 12 91546950 91546950 A T DCN Silent p.L223L 0.44 TCGA-CC-A7IH-01 12 9907785 9907785 T C CD69 Missense_Mutation p.E87G 0.41 tolerated(0.07) benign(0) TCGA-CC-A7IH-01 12 9997154 9997154 C A KLRF1 3'UTR 0.23 TCGA-CC-A7IH-01 13 107145427 107145427 C T EFNB2 Missense_Mutation p.M321I 0.31 tolerated(0.2) possibly_damaging(0.517) TCGA-CC-A7IH-01 13 111158834 111158834 T A COL4A2 Missense_Mutation p.L1492Q 0.11 unknown(0) TCGA-CC-A7IH-01 13 111938504 111938504 A G ARHGEF7 Missense_Mutation p.K675R 0.10 tolerated(0.09) possibly_damaging(0.621) TCGA-CC-A7IH-01 13 19997115 19997115 G T TPTE2 3'UTR 0.46 TCGA-CC-A7IH-01 13 25144830 25144830 C A RP11-556N21.1 RNA 0.40 TCGA-CC-A7IH-01 13 30066785 30066785 T C MTUS2 Silent p.L1180L 0.36 TCGA-CC-A7IH-01 13 31735779 31735779 T A HSPH1 5'UTR 0.39 TCGA-CC-A7IH-01 13 35729982 35729982 T A NBEA Silent p.I839I 0.20 TCGA-CC-A7IH-01 13 36049699 36049699 G T MAB21L1 Missense_Mutation p.P193T 0.38 tolerated(0.17) benign(0.057) TCGA-CC-A7IH-01 13 45915286 45915286 G A TPT1 5'UTR 0.44 TCGA-CC-A7IH-01 13 86368800 86368800 A C SLITRK6 Missense_Mutation p.L615R 0.40 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IH-01 13 88331310 88331310 A C SLITRK5 3'UTR 0.40 TCGA-CC-A7IH-01 13 95858957 95858957 G T ABCC4 Silent p.I330I 0.47 TCGA-CC-A7IH-01 13 96237036 96237036 C A DZIP1 Silent p.V826V 0.42 TCGA-CC-A7IH-01 13 97639601 97639601 G T OXGR1 Missense_Mutation p.P138Q 0.39 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 14 102901170 102901170 C T TECPR2 Silent p.G672G 0.06 TCGA-CC-A7IH-01 14 104460669 104460669 G T TDRD9 Missense_Mutation p.G394V 0.38 deleterious(0) probably_damaging(0.947) TCGA-CC-A7IH-01 14 104618412 104618412 T A KIF26A Missense_Mutation p.C117S 0.06 tolerated(0.32) probably_damaging(0.991) TCGA-CC-A7IH-01 14 104640574 104640574 C A KIF26A Missense_Mutation p.A707D 0.46 deleterious(0) benign(0.041) TCGA-CC-A7IH-01 14 105070865 105070865 G A TMEM179 Missense_Mutation p.R72C 0.49 deleterious(0) probably_damaging(0.966) TCGA-CC-A7IH-01 14 106208357 106208357 G A IGHG1 Silent p.S181S 0.46 TCGA-CC-A7IH-01 14 20586546 20586546 A C OR4K17 Silent p.I327I 0.46 TCGA-CC-A7IH-01 14 20836558 20836558 T C TEP1 3'UTR 0.37 TCGA-CC-A7IH-01 14 21861848 21861848 G A CHD8 Missense_Mutation p.P2036S 0.38 tolerated_low_confidence(0.47) benign(0.005) TCGA-CC-A7IH-01 14 23865974 23865974 T G MYH6 Silent p.R741R 0.36 TCGA-CC-A7IH-01 14 23901694 23901694 A C MYH7 Missense_Mutation p.L175R 0.45 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 14 24806550 24806550 A T RIPK3 Silent p.S339S 0.46 TCGA-CC-A7IH-01 14 24882219 24882219 G A NYNRIN Missense_Mutation p.A887T 0.47 deleterious_low_confidence(0) probably_damaging(1) TCGA-CC-A7IH-01 14 31641123 31641123 G A HECTD1 Nonsense_Mutation p.Q426* 0.40 TCGA-CC-A7IH-01 14 32560362 32560362 A G ARHGAP5 Missense_Mutation p.I163V 0.52 tolerated(0.94) benign(0.019) TCGA-CC-A7IH-01 14 34269082 34269082 G C NPAS3 Silent p.P523P 0.44 TCGA-CC-A7IH-01 14 34270267 34270267 C G NPAS3 Nonsense_Mutation p.Y918* 0.35 TCGA-CC-A7IH-01 14 38293067 38293067 G T TTC6 Nonsense_Mutation p.E1627* 0.47 TCGA-CC-A7IH-01 14 38724410 38724410 C T CLEC14A Missense_Mutation p.C273Y 0.51 deleterious(0) probably_damaging(0.994) TCGA-CC-A7IH-01 14 42356398 42356398 C A LRFN5 Silent p.T190T 0.43 TCGA-CC-A7IH-01 14 47310945 47310945 G T MDGA2 3'UTR 0.43 TCGA-CC-A7IH-01 14 50713590 50713590 G A L2HGDH 3'UTR 0.56 TCGA-CC-A7IH-01 14 51297232 51297232 C A NIN 5'UTR 0.54 TCGA-CC-A7IH-01 14 55629758 55629758 G C DLGAP5 Missense_Mutation p.I528M 0.30 tolerated(0.24) benign(0.016) TCGA-CC-A7IH-01 14 56079277 56079277 A G KTN1 Missense_Mutation p.K171E 0.40 tolerated(0.06) possibly_damaging(0.753) TCGA-CC-A7IH-01 14 64519465 64519465 G A SYNE2 Missense_Mutation p.C2945Y 0.36 benign(0.001) TCGA-CC-A7IH-01 14 65527939 65527939 T G FNTB Missense_Mutation p.V408G 0.40 deleterious(0.01) probably_damaging(0.988) TCGA-CC-A7IH-01 14 69256435 69256435 G T ZFP36L1 Missense_Mutation p.L278I 0.56 tolerated(0.36) benign(0.083) TCGA-CC-A7IH-01 14 74825421 74825421 G T VRTN Missense_Mutation p.M645I 0.38 tolerated(0.07) benign(0.022) TCGA-CC-A7IH-01 14 77843998 77843998 T A SAMD15 Silent p.P79P 0.42 TCGA-CC-A7IH-01 14 92126218 92126218 A G CATSPERB Silent p.F465F 0.39 TCGA-CC-A7IH-01 14 94046694 94046694 T A UNC79 Missense_Mutation p.L701Q 0.50 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IH-01 14 94845669 94845669 T A SERPINA1 Intron 0.42 TCGA-CC-A7IH-01 14 95560494 95560494 C A DICER1 Splice_Site p.X1699_splice 0.38 TCGA-CC-A7IH-01 14 96707662 96707662 G T BDKRB2 Missense_Mutation p.V333L 0.43 deleterious(0) possibly_damaging(0.561) TCGA-CC-A7IH-01 14 99865385 99865385 T C SETD3 Silent p.K472K 0.40 TCGA-CC-A7IH-01 15 101438327 101438327 C T ALDH1A3 Silent p.L274L 0.13 TCGA-CC-A7IH-01 15 101523888 101523888 G T LRRK1 Missense_Mutation p.L139F 0.37 deleterious(0.04) probably_damaging(1) TCGA-CC-A7IH-01 15 101595197 101595197 C A LRRK1 Silent p.A1367A 0.45 TCGA-CC-A7IH-01 15 20662695 20662695 A T HERC2P3 RNA 0.13 TCGA-CC-A7IH-01 15 24921224 24921224 G T NPAP1 Missense_Mutation p.R70S 0.45 deleterious(0.01) benign(0.402) TCGA-CC-A7IH-01 15 24921716 24921716 G A NPAP1 Silent p.L234L 0.53 TCGA-CC-A7IH-01 15 27114454 27114454 T A GABRA5 Missense_Mutation p.I20N 0.34 deleterious_low_confidence(0.01) benign(0.009) TCGA-CC-A7IH-01 15 31233790 31233790 A G MTMR10 Silent p.F739F 0.39 TCGA-CC-A7IH-01 15 32988889 32988889 G T SCG5 3'UTR 0.38 TCGA-CC-A7IH-01 15 34355220 34355220 T G CHRM5 Missense_Mutation p.L101R 0.39 deleterious(0) probably_damaging(0.995) TCGA-CC-A7IH-01 15 34635325 34635325 T C NOP10 5'UTR 0.46 TCGA-CC-A7IH-01 15 35045130 35045130 T C GJD2 Missense_Mutation p.K172R 0.40 tolerated(0.08) benign(0.376) TCGA-CC-A7IH-01 15 35830633 35830633 T A DPH6 Missense_Mutation p.T52S 0.44 tolerated(0.21) benign(0.402) TCGA-CC-A7IH-01 15 38773693 38773693 A C FAM98B Intron 0.40 TCGA-CC-A7IH-01 15 43897534 43897534 T C STRC Silent p.R1286R 0.03 TCGA-CC-A7IH-01 15 44202176 44202176 A T FRMD5 Missense_Mutation p.Y111N 0.33 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 15 45668899 45668899 T G GATM Missense_Mutation p.D63A 0.37 tolerated(0.64) benign(0.002) TCGA-CC-A7IH-01 15 45694903 45694903 G C SPATA5L1 Missense_Mutation p.R92S 0.50 tolerated(0.72) benign(0.021) TCGA-CC-A7IH-01 15 48741033 48741033 G T FBN1 Missense_Mutation p.T1868K 0.10 possibly_damaging(0.624) TCGA-CC-A7IH-01 15 50578223 50578223 T A GABPB1 Intron 0.43 TCGA-CC-A7IH-01 15 55971629 55971629 C A PRTG Missense_Mutation p.V330F 0.42 tolerated(0.06) probably_damaging(0.956) TCGA-CC-A7IH-01 15 68504126 68504126 T A CLN6 Missense_Mutation p.S125C 0.50 deleterious(0) probably_damaging(0.998) TCGA-CC-A7IH-01 15 68609680 68609680 C A ITGA11 Nonsense_Mutation p.E880* 0.39 TCGA-CC-A7IH-01 15 70342414 70342414 A G TLE3 3'UTR 0.38 TCGA-CC-A7IH-01 15 73564819 73564819 G C NEO1 Missense_Mutation p.V961L 0.37 tolerated(1) benign(0.42) TCGA-CC-A7IH-01 15 74426996 74426996 C G ISLR2 Missense_Mutation p.P634R 0.45 deleterious(0.02) benign(0.188) TCGA-CC-A7IH-01 15 78837269 78837269 G A PSMA4 Missense_Mutation p.D116N 0.41 tolerated(0.15) benign(0.34) TCGA-CC-A7IH-01 15 79080627 79080627 G A ADAMTS7 Missense_Mutation p.A423V 0.46 deleterious(0.02) benign(0.41) TCGA-CC-A7IH-01 15 79080629 79080629 G A ADAMTS7 Silent p.D422D 0.45 TCGA-CC-A7IH-01 15 83226572 83226572 T A CPEB1 Missense_Mutation p.S182C 0.45 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IH-01 15 88472454 88472454 A T NTRK3 Missense_Mutation p.S701T 0.43 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 15 90272996 90272996 A G WDR93 Silent p.K402K 0.04 TCGA-CC-A7IH-01 15 91423153 91423153 C T FURIN Nonsense_Mutation p.Q439* 0.45 TCGA-CC-A7IH-01 16 14020498 14020498 A T ERCC4 Nonsense_Mutation p.K157* 0.40 TCGA-CC-A7IH-01 16 14341108 14341108 C T MKL2 Missense_Mutation p.P664L 0.36 tolerated(0.05) possibly_damaging(0.543) TCGA-CC-A7IH-01 16 1841477 1841477 G T IGFALS Missense_Mutation p.H352Q 0.06 tolerated(0.95) benign(0.07) TCGA-CC-A7IH-01 16 18810100 18810100 C T ARL6IP1 Silent p.L31L 0.42 TCGA-CC-A7IH-01 16 19533399 19533399 G A GDE1 5'UTR 0.44 TCGA-CC-A7IH-01 16 19640035 19640035 A C C16orf62 Missense_Mutation p.N576T 0.31 deleterious(0.02) possibly_damaging(0.83) TCGA-CC-A7IH-01 16 20432662 20432663 - C ACSM5 Frame_Shift_Ins p.K238Qfs*28 0.33 TCGA-CC-A7IH-01 16 2499281 2499281 A T CCNF Splice_Site p.X407_splice 0.38 TCGA-CC-A7IH-01 16 27268833 27268833 T C NSMCE1 Missense_Mutation p.Q20R 0.46 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 16 27472839 27472839 C A GTF3C1 Missense_Mutation p.K2054N 0.40 deleterious(0) possibly_damaging(0.844) TCGA-CC-A7IH-01 16 28137133 28137141 CGGCAGTCG - XPO6 In_Frame_Del p.N545_R548delinsK 0.37 TCGA-CC-A7IH-01 16 29680189 29680189 T C SPN 3'UTR 0.45 TCGA-CC-A7IH-01 16 30749727 30749727 G A SRCAP Missense_Mutation p.G2789E 0.11 unknown(0) TCGA-CC-A7IH-01 16 30771751 30771751 A T C16orf93 Missense_Mutation p.L108Q 0.36 deleterious(0) probably_damaging(0.992) TCGA-CC-A7IH-01 16 3306451 3306451 T A MEFV Missense_Mutation p.Q46L 0.48 deleterious(0) probably_damaging(0.967) TCGA-CC-A7IH-01 16 4625242 4625242 A T C16orf96 Missense_Mutation p.Q254L 0.25 deleterious(0) probably_damaging(0.981) TCGA-CC-A7IH-01 16 47622887 47622887 C G PHKB Missense_Mutation p.S314R 0.35 tolerated(0.28) benign(0.008) TCGA-CC-A7IH-01 16 53337778 53337778 A T CHD9 Missense_Mutation p.N1954Y 0.45 probably_damaging(0.964) TCGA-CC-A7IH-01 16 53515713 53515713 A C RBL2 Missense_Mutation p.K1072T 0.51 tolerated(0.16) benign(0.09) TCGA-CC-A7IH-01 16 55705696 55705696 A T SLC6A2 Intron 0.36 TCGA-CC-A7IH-01 16 57760018 57760018 C A CCDC135 Silent p.P599P 0.47 TCGA-CC-A7IH-01 16 69703941 69703943 AGA - NFAT5 In_Frame_Del p.E480del 0.36 TCGA-CC-A7IH-01 16 70190550 70190550 C A PDPR Missense_Mutation p.A803D 0.40 deleterious(0.04) benign(0.211) TCGA-CC-A7IH-01 16 74747959 74747959 A G FA2H 3'UTR 0.27 TCGA-CC-A7IH-01 16 76509861 76509861 G A CNTNAP4 Missense_Mutation p.G488S 0.37 deleterious(0.02) benign(0.264) TCGA-CC-A7IH-01 16 7760804 7760804 G T RBFOX1 3'UTR 0.52 TCGA-CC-A7IH-01 16 83998905 83998905 G A OSGIN1 Missense_Mutation p.V243I 0.44 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IH-01 16 84459339 84459339 A T ATP2C2 Splice_Site p.X307_splice 0.37 TCGA-CC-A7IH-01 16 86544400 86544400 C A FOXF1 Nonsense_Mutation p.Y75* 0.38 TCGA-CC-A7IH-01 16 88705453 88705453 T A IL17C Missense_Mutation p.L24H 0.11 tolerated(0.12) benign(0.017) TCGA-CC-A7IH-01 16 8988707 8988707 C A USP7 Missense_Mutation p.E1015D 0.37 deleterious(0.05) benign(0.354) TCGA-CC-A7IH-01 16 90161572 90161572 A T TUBB8P7 RNA 0.22 TCGA-CC-A7IH-01 17 10212854 10212854 G C MYH13 Silent p.V1650V 0.44 TCGA-CC-A7IH-01 17 10351254 10351254 G T MYH4 Missense_Mutation p.L1616M 0.35 deleterious(0.04) benign(0.03) TCGA-CC-A7IH-01 17 11696953 11696953 A G DNAH9 Missense_Mutation p.Q2732R 0.37 benign(0.017) TCGA-CC-A7IH-01 17 16470686 16470686 T C ZNF287 Silent p.A120A 0.40 TCGA-CC-A7IH-01 17 17698925 17698925 A T RAI1 Missense_Mutation p.Q888L 0.48 tolerated(0.56) benign(0.05) TCGA-CC-A7IH-01 17 18061879 18061879 G T MYO15A Missense_Mutation p.A3004S 0.41 unknown(0) TCGA-CC-A7IH-01 17 19289686 19289686 G C MFAP4 Silent p.P83P 0.44 TCGA-CC-A7IH-01 17 21731359 21731359 T A UBBP4 Intron 0.34 TCGA-CC-A7IH-01 17 21825482 21825482 C A FAM27L RNA 0.40 TCGA-CC-A7IH-01 17 28534791 28534791 A T SLC6A4 Missense_Mutation p.W537R 0.37 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 17 30643248 30643248 T A RHBDL3 Intron 0.46 TCGA-CC-A7IH-01 17 31048069 31048069 G A MYO1D Missense_Mutation p.R629C 0.08 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 17 3119514 3119514 C A OR1A1 Nonsense_Mutation p.Y200* 0.42 TCGA-CC-A7IH-01 17 3324195 3324195 T C OR3A3 Missense_Mutation p.F112L 0.36 deleterious(0.02) benign(0.053) TCGA-CC-A7IH-01 17 3349813 3349813 T C SPATA22 Missense_Mutation p.Y252C 0.38 deleterious(0) probably_damaging(0.997) TCGA-CC-A7IH-01 17 33767910 33767910 A T SLFN13 Missense_Mutation p.F800I 0.46 tolerated(0.13) benign(0.367) TCGA-CC-A7IH-01 17 34311402 34311402 T C CCL14 Missense_Mutation p.N72D 0.38 deleterious(0.02) possibly_damaging(0.501) TCGA-CC-A7IH-01 17 34956754 34956754 A T DHRS11 3'UTR 0.42 TCGA-CC-A7IH-01 17 35656284 35656284 T A ACACA Intron 0.44 TCGA-CC-A7IH-01 17 36619393 36619393 C A ARHGAP23 Silent p.V128V 0.37 TCGA-CC-A7IH-01 17 38512266 38512266 G A RARA Missense_Mutation p.E393K 0.45 deleterious(0.01) probably_damaging(0.94) TCGA-CC-A7IH-01 17 39084545 39084545 T C KRT23 Missense_Mutation p.E289G 0.49 deleterious(0.01) benign(0.143) TCGA-CC-A7IH-01 17 39296524 39296524 G C KRTAP4-6 Silent p.T72T 0.38 TCGA-CC-A7IH-01 17 3937451 3937451 A G ZZEF1 Silent p.L2148L 0.39 TCGA-CC-A7IH-01 17 39538297 39538297 C T KRT34 Missense_Mutation p.A110T 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-CC-A7IH-01 17 40117322 40117322 A G CNP 5'Flank 0.37 TCGA-CC-A7IH-01 17 40715081 40715081 G C COASY Silent p.L176L 0.49 TCGA-CC-A7IH-01 17 40721541 40721541 G T MLX Missense_Mutation p.Q185H 0.42 tolerated(0.16) benign(0.06) TCGA-CC-A7IH-01 17 41150829 41150829 G A RPL27 Missense_Mutation p.R21H 0.45 tolerated(0.28) benign(0.013) TCGA-CC-A7IH-01 17 41166312 41166312 G T IFI35 Missense_Mutation p.G288V 0.55 deleterious(0) probably_damaging(0.959) TCGA-CC-A7IH-01 17 41349033 41349033 A G NBR1 Missense_Mutation p.T646A 0.05 tolerated(0.06) possibly_damaging(0.881) TCGA-CC-A7IH-01 17 42328926 42328926 G A SLC4A1 Missense_Mutation p.S781F 0.35 deleterious(0) possibly_damaging(0.905) TCGA-CC-A7IH-01 17 43311537 43311537 C A FMNL1 Missense_Mutation p.S195Y 0.17 tolerated(0.07) unknown(0) TCGA-CC-A7IH-01 17 45911898 45911898 G A LRRC46 Missense_Mutation p.G75E 0.07 tolerated(1) benign(0.006) TCGA-CC-A7IH-01 17 4649179 4649179 C A ZMYND15 Missense_Mutation p.A716E 0.50 deleterious_low_confidence(0.02) unknown(0) TCGA-CC-A7IH-01 17 48704263 48704263 A C CACNA1G 3'UTR 0.56 TCGA-CC-A7IH-01 17 49239133 49239133 A T NME1 Missense_Mutation p.E154V 0.51 deleterious(0) probably_damaging(0.95) TCGA-CC-A7IH-01 17 56247411 56247411 A G OR4D2 Missense_Mutation p.Y132C 0.38 deleterious(0.01) benign(0.216) TCGA-CC-A7IH-01 17 56384317 56384317 T C BZRAP1 Missense_Mutation p.K1666E 0.40 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IH-01 17 56769973 56769973 T C RAD51C 5'UTR 0.38 TCGA-CC-A7IH-01 17 57189391 57189391 C T SKA2 3'UTR 0.09 TCGA-CC-A7IH-01 17 57351120 57351120 A T GDPD1 Missense_Mutation p.N311Y 0.39 deleterious(0.01) benign(0.106) TCGA-CC-A7IH-01 17 59667968 59667968 T A NACA2 Nonsense_Mutation p.R192* 0.38 TCGA-CC-A7IH-01 17 61566056 61566056 T G ACE Missense_Mutation p.W785G 0.40 deleterious(0.02) possibly_damaging(0.721) TCGA-CC-A7IH-01 17 61957713 61957713 A G GH2 3'UTR 0.13 TCGA-CC-A7IH-01 17 61987231 61987231 A T CSHL1 Missense_Mutation p.L170H 0.48 deleterious(0) probably_damaging(0.988) TCGA-CC-A7IH-01 17 63010282 63010282 T A GNA13 3'UTR 0.41 TCGA-CC-A7IH-01 17 71196782 71196782 G A COG1 Missense_Mutation p.R383Q 0.44 deleterious(0.03) possibly_damaging(0.484) TCGA-CC-A7IH-01 17 74921070 74921070 C A MGAT5B Silent p.R361R 0.39 TCGA-CC-A7IH-01 17 7530941 7530941 G T SAT2 Silent p.R5R 0.35 TCGA-CC-A7IH-01 17 76183458 76183458 G C AFMID Missense_Mutation p.D3H 0.42 deleterious_low_confidence(0) possibly_damaging(0.575) TCGA-CC-A7IH-01 17 7644139 7644139 G A DNAH2 Silent p.R506R 0.34 TCGA-CC-A7IH-01 17 76497765 76497765 G C DNAH17-AS1 3'UTR 0.25 TCGA-CC-A7IH-01 17 7660453 7660453 T A DNAH2 Missense_Mutation p.L650Q 0.38 probably_damaging(0.983) TCGA-CC-A7IH-01 17 77756090 77756090 C T CBX2 Intron 0.14 TCGA-CC-A7IH-01 17 79170793 79170793 C G AZI1 Silent p.V570V 0.44 TCGA-CC-A7IH-01 17 79617968 79617968 A T PDE6G 3'UTR 0.16 TCGA-CC-A7IH-01 17 7983459 7983459 T A AC129492.6 Missense_Mutation p.L47H 0.36 possibly_damaging(0.65) TCGA-CC-A7IH-01 17 7989531 7989531 T A ALOX12B Missense_Mutation p.Q52L 0.42 tolerated(0.07) benign(0.109) TCGA-CC-A7IH-01 17 80674715 80674715 C T FN3KRP Silent p.G28G 0.46 TCGA-CC-A7IH-01 17 8215862 8215862 G C ARHGEF15 Missense_Mutation p.D169H 0.33 deleterious_low_confidence(0) possibly_damaging(0.503) TCGA-CC-A7IH-01 17 9804355 9804355 C T RCVRN Silent p.P148P 0.47 TCGA-CC-A7IH-01 18 12009936 12009936 C A IMPA2 Missense_Mutation p.S95R 0.47 deleterious(0.05) possibly_damaging(0.672) TCGA-CC-A7IH-01 18 13113583 13113583 A T CEP192 Splice_Site p.X2350_splice 0.45 TCGA-CC-A7IH-01 18 13826194 13826194 A C MC5R Missense_Mutation p.I144L 0.39 deleterious(0) benign(0.104) TCGA-CC-A7IH-01 18 22057255 22057255 T C HRH4 Missense_Mutation p.L301S 0.40 deleterious(0) possibly_damaging(0.901) TCGA-CC-A7IH-01 18 22805628 22805628 A T ZNF521 Missense_Mutation p.Y752N 0.44 deleterious(0) probably_damaging(0.998) TCGA-CC-A7IH-01 18 24126984 24126984 T A KCTD1 Intron 0.57 TCGA-CC-A7IH-01 18 29793483 29793483 A C MEP1B Missense_Mutation p.N514H 0.40 tolerated(0.09) possibly_damaging(0.58) TCGA-CC-A7IH-01 18 30554635 30554635 A T CCDC178 Missense_Mutation p.L800Q 0.33 deleterious(0) probably_damaging(0.993) TCGA-CC-A7IH-01 18 48473744 48473744 C A ME2 3'UTR 0.50 TCGA-CC-A7IH-01 18 50923756 50923756 A T DCC Missense_Mutation p.T923S 0.42 deleterious(0.04) possibly_damaging(0.71) TCGA-CC-A7IH-01 18 53303052 53303052 T A TCF4 Missense_Mutation p.Y26F 0.34 deleterious_low_confidence(0) unknown(0) TCGA-CC-A7IH-01 18 5397253 5397253 G T EPB41L3 Missense_Mutation p.A882E 0.31 tolerated_low_confidence(0.15) benign(0.002) TCGA-CC-A7IH-01 18 56414872 56414872 A G MALT1 Missense_Mutation p.H758R 0.31 tolerated_low_confidence(0.36) benign(0.001) TCGA-CC-A7IH-01 18 77896097 77896097 A G ADNP2 Missense_Mutation p.H934R 0.39 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IH-01 18 8825710 8825710 C A SOGA2 Missense_Mutation p.P1401H 0.40 deleterious(0.03) possibly_damaging(0.885) TCGA-CC-A7IH-01 19 10129508 10129508 G T RDH8 Missense_Mutation p.V142F 0.33 deleterious(0) probably_damaging(0.965) TCGA-CC-A7IH-01 19 10404581 10404581 G T ICAM5 Missense_Mutation p.R558L 0.46 tolerated(0.07) benign(0.029) TCGA-CC-A7IH-01 19 11618657 11618657 T C ECSIT Missense_Mutation p.S269G 0.29 deleterious(0.04) probably_damaging(0.927) TCGA-CC-A7IH-01 19 11918796 11918796 A G ZNF491 3'UTR 0.52 TCGA-CC-A7IH-01 19 12574632 12574632 T A ZNF709 3'UTR 0.15 TCGA-CC-A7IH-01 19 13988465 13988465 T A NANOS3 Missense_Mutation p.Y135N 0.52 deleterious(0.04) probably_damaging(1) TCGA-CC-A7IH-01 19 14029727 14029727 G T CC2D1A Missense_Mutation p.V341L 0.39 tolerated(0.35) benign(0.005) TCGA-CC-A7IH-01 19 1434882 1434882 G C DAZAP1 Missense_Mutation p.V399L 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.695) TCGA-CC-A7IH-01 19 14772862 14772862 C T EMR3 Missense_Mutation p.G90R 0.42 deleterious(0.01) probably_damaging(1) TCGA-CC-A7IH-01 19 15083653 15083653 G A SLC1A6 Nonsense_Mutation p.Q24* 0.44 TCGA-CC-A7IH-01 19 15122107 15122107 A G CCDC105 Missense_Mutation p.Q157R 0.36 tolerated(0.26) probably_damaging(0.999) TCGA-CC-A7IH-01 19 15281192 15281192 A G NOTCH3 Silent p.S1688S 0.47 TCGA-CC-A7IH-01 19 17441186 17441186 A G ANO8 Missense_Mutation p.L374P 0.41 deleterious(0.01) probably_damaging(0.968) TCGA-CC-A7IH-01 19 18273890 18273890 A G PIK3R2 Missense_Mutation p.E408G 0.35 deleterious(0.02) possibly_damaging(0.705) TCGA-CC-A7IH-01 19 21477081 21477081 A T ZNF708 Nonsense_Mutation p.C229* 0.47 TCGA-CC-A7IH-01 19 22375842 22375842 G T ZNF676 Missense_Mutation p.H36N 0.23 tolerated(0.06) benign(0.221) TCGA-CC-A7IH-01 19 23415022 23415022 T C ZNF724P Missense_Mutation p.Q26R 0.42 tolerated(0.48) possibly_damaging(0.728) TCGA-CC-A7IH-01 19 2810300 2810300 A T THOP1 Splice_Site p.X486_splice 0.43 TCGA-CC-A7IH-01 19 3019696 3019696 C A TLE2 Splice_Site p.X123_splice 0.35 TCGA-CC-A7IH-01 19 35823773 35823773 A T CD22 Missense_Mutation p.R120W 0.34 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 19 36370026 36370026 C A APLP1 Silent p.I588I 0.42 TCGA-CC-A7IH-01 19 37047079 37047079 T C ZNF529 Missense_Mutation p.H12R 0.41 tolerated_low_confidence(0.37) benign(0.068) TCGA-CC-A7IH-01 19 37854185 37854185 A T HKR1 Silent p.P496P 0.39 TCGA-CC-A7IH-01 19 38377306 38377306 C T WDR87 Silent p.K2296K 0.44 TCGA-CC-A7IH-01 19 38798334 38798334 C T YIF1B Missense_Mutation p.E200K 0.42 deleterious(0) probably_damaging(0.996) TCGA-CC-A7IH-01 19 39994714 39994714 T A DLL3 Missense_Mutation p.V219E 0.46 tolerated(0.07) benign(0.103) TCGA-CC-A7IH-01 19 40578948 40578948 T C ZNF780A 3'UTR 0.43 TCGA-CC-A7IH-01 19 41071395 41071395 G A SPTBN4 Silent p.R1994R 0.40 TCGA-CC-A7IH-01 19 41133127 41133127 C T LTBP4 Silent p.D1477D 0.32 TCGA-CC-A7IH-01 19 41455083 41455083 G A AC092071.1 3'Flank 0.53 TCGA-CC-A7IH-01 19 42510881 42510881 A G GRIK5 Silent p.P651P 0.31 TCGA-CC-A7IH-01 19 42795109 42795109 C G CIC Missense_Mutation p.S730W 0.43 probably_damaging(0.955) TCGA-CC-A7IH-01 19 43013273 43013273 T C CEACAM1 Silent p.V523V 0.48 TCGA-CC-A7IH-01 19 43372126 43372126 A T PSG1 3'UTR 0.52 TCGA-CC-A7IH-01 19 44223324 44223324 C A IRGC Missense_Mutation p.A205D 0.41 tolerated(0.28) benign(0.122) TCGA-CC-A7IH-01 19 44241827 44241827 T A SMG9 Missense_Mutation p.Q306L 0.39 deleterious(0) probably_damaging(0.983) TCGA-CC-A7IH-01 19 44306498 44306498 C A LYPD5 Missense_Mutation p.C12F 0.38 tolerated(0.07) benign(0.007) TCGA-CC-A7IH-01 19 44892183 44892183 T G ZNF285 Missense_Mutation p.Q75P 0.40 tolerated(0.11) benign(0.003) TCGA-CC-A7IH-01 19 4510630 4510630 C A PLIN4 Missense_Mutation p.K1100N 0.47 tolerated(0.06) benign(0.116) TCGA-CC-A7IH-01 19 46974216 46974216 A G PNMAL1 Missense_Mutation p.L26S 0.38 deleterious(0) possibly_damaging(0.765) TCGA-CC-A7IH-01 19 47856186 47856186 T G DHX34 5'UTR 0.40 TCGA-CC-A7IH-01 19 48185325 48185325 A T GLTSCR1 Silent p.P733P 0.20 TCGA-CC-A7IH-01 19 48537602 48537602 A T CABP5 Missense_Mutation p.D122E 0.06 deleterious(0.01) possibly_damaging(0.791) TCGA-CC-A7IH-01 19 48551497 48551497 C A PLA2G4C 3'UTR 0.47 TCGA-CC-A7IH-01 19 49309901 49309901 C G BCAT2 Missense_Mutation p.G58A 0.36 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 19 50549039 50549039 A G ZNF473 Missense_Mutation p.N447D 0.43 tolerated(0.13) benign(0.014) TCGA-CC-A7IH-01 19 51022208 51022208 G A LRRC4B Silent p.S254S 0.32 TCGA-CC-A7IH-01 19 51128790 51128790 C A SYT3 Missense_Mutation p.E478D 0.31 tolerated(1) benign(0.003) TCGA-CC-A7IH-01 19 51645871 51645871 A T SIGLEC7 Missense_Mutation p.N82I 0.09 deleterious(0.05) possibly_damaging(0.525) TCGA-CC-A7IH-01 19 52219555 52219555 C A HAS1 Missense_Mutation p.D339Y 0.37 deleterious(0) probably_damaging(0.988) TCGA-CC-A7IH-01 19 52223156 52223156 G T HAS1 Intron 0.33 TCGA-CC-A7IH-01 19 53303548 53303548 T C ZNF28 Missense_Mutation p.H517R 0.33 deleterious(0) benign(0.378) TCGA-CC-A7IH-01 19 54297095 54297095 T C NLRP12 3'UTR 0.56 TCGA-CC-A7IH-01 19 5455751 5455751 C T ZNRF4 Silent p.V83V 0.41 TCGA-CC-A7IH-01 19 54721082 54721082 A G LILRB3 Silent p.D593D 0.47 TCGA-CC-A7IH-01 19 54803142 54803142 G A LILRA3 Missense_Mutation p.R179W 0.31 tolerated(0.11) benign(0.003) TCGA-CC-A7IH-01 19 54803146 54803146 T C LILRA3 Silent p.S177S 0.30 TCGA-CC-A7IH-01 19 54803147 54803147 G C LILRA3 Nonsense_Mutation p.S177* 0.31 TCGA-CC-A7IH-01 19 55086295 55086295 C T LILRA2 Silent p.D150D 0.05 TCGA-CC-A7IH-01 19 56173908 56173908 G T U2AF2 Missense_Mutation p.G176V 0.40 tolerated(0.58) benign(0.003) TCGA-CC-A7IH-01 19 57327366 57327366 T C PEG3 Missense_Mutation p.H815R 0.04 tolerated(0.32) benign(0.004) TCGA-CC-A7IH-01 19 57646378 57646378 C A ZIM3 Nonsense_Mutation p.G443* 0.39 TCGA-CC-A7IH-01 19 57724334 57724334 A T ZNF264 Missense_Mutation p.Q623H 0.06 tolerated_low_confidence(0.17) benign(0.008) TCGA-CC-A7IH-01 19 58452722 58452722 T C ZNF256 Missense_Mutation p.H485R 0.41 deleterious(0) probably_damaging(0.994) TCGA-CC-A7IH-01 19 58565470 58565470 T A ZSCAN1 3'UTR 0.37 TCGA-CC-A7IH-01 19 59022230 59022230 G A SLC27A5 Silent p.L252L 0.47 TCGA-CC-A7IH-01 19 59057222 59057222 A G TRIM28 Missense_Mutation p.Q182R 0.40 tolerated(0.65) probably_damaging(0.982) TCGA-CC-A7IH-01 19 8117950 8117950 T A CCL25 Missense_Mutation p.L6Q 0.49 deleterious(0) probably_damaging(0.982) TCGA-CC-A7IH-01 19 8971699 8971699 T G MUC16 Missense_Mutation p.Q14298P 0.04 probably_damaging(0.953) TCGA-CC-A7IH-01 19 9048117 9048117 T C MUC16 Missense_Mutation p.I11172V 0.37 benign(0.007) TCGA-CC-A7IH-01 1 103453234 103453234 T A COL11A1 Silent p.A819A 0.38 TCGA-CC-A7IH-01 1 10363425 10363425 A T KIF1B Intron 0.41 TCGA-CC-A7IH-01 1 109525342 109525342 C T WDR47 Missense_Mutation p.G727S 0.44 tolerated(0.2) possibly_damaging(0.791) TCGA-CC-A7IH-01 1 109801366 109801366 G C CELSR2 Missense_Mutation p.R1208P 0.44 deleterious(0) possibly_damaging(0.544) TCGA-CC-A7IH-01 1 110655547 110655547 G T UBL4B Nonsense_Mutation p.E131* 0.38 TCGA-CC-A7IH-01 1 110655689 110655689 A G UBL4B 3'UTR 0.37 TCGA-CC-A7IH-01 1 111146974 111146974 T A KCNA2 Missense_Mutation p.E144V 0.47 tolerated(0.06) probably_damaging(0.967) TCGA-CC-A7IH-01 1 111216207 111216207 C A KCNA3 Missense_Mutation p.V409F 0.42 deleterious(0) probably_damaging(0.996) TCGA-CC-A7IH-01 1 11141273 11141273 T A EXOSC10 Missense_Mutation p.S435C 0.42 deleterious(0.04) possibly_damaging(0.563) TCGA-CC-A7IH-01 1 117556093 117556093 G T CD101 Missense_Mutation p.V303F 0.39 tolerated(0.71) benign(0.014) TCGA-CC-A7IH-01 1 1222886 1222886 A T SCNN1D Splice_Site p.X437_splice 0.34 TCGA-CC-A7IH-01 1 12837669 12837669 G A PRAMEF12 Missense_Mutation p.G460D 0.46 deleterious(0.02) probably_damaging(0.947) TCGA-CC-A7IH-01 1 147408746 147408746 A T GPR89B Silent p.L16L 0.23 TCGA-CC-A7IH-01 1 149902441 149902441 T C MTMR11 Splice_Site p.X489_splice 0.15 TCGA-CC-A7IH-01 1 150192905 150192905 T C ANP32E 3'UTR 0.67 TCGA-CC-A7IH-01 1 151262629 151262630 - G ZNF687 Frame_Shift_Ins p.R1000Afs*16 0.15 TCGA-CC-A7IH-01 1 151701365 151701365 T A RIIAD1 3'UTR 0.14 TCGA-CC-A7IH-01 1 152081242 152081242 T C TCHH Missense_Mutation p.D1484G 0.21 unknown(0) TCGA-CC-A7IH-01 1 152186189 152186189 G T HRNR Missense_Mutation p.S2639Y 0.77 benign(0.184) TCGA-CC-A7IH-01 1 152280562 152280562 T A FLG Missense_Mutation p.H2267L 0.20 benign(0.227) TCGA-CC-A7IH-01 1 152328113 152328113 A G FLG2 Missense_Mutation p.S717P 0.19 unknown(0) TCGA-CC-A7IH-01 1 152329823 152329823 A T FLG2 Missense_Mutation p.S147T 0.71 unknown(0) TCGA-CC-A7IH-01 1 152671881 152671881 C A LCE2A 3'UTR 0.20 TCGA-CC-A7IH-01 1 152883220 152883220 T A IVL Missense_Mutation p.L316Q 0.44 tolerated(0.1) probably_damaging(0.997) TCGA-CC-A7IH-01 1 154296633 154296633 T A AQP10 Intron 0.17 TCGA-CC-A7IH-01 1 156180360 156180360 G A SLC25A44 3'UTR 0.24 TCGA-CC-A7IH-01 1 156255759 156255759 T A TMEM79 Missense_Mutation p.F248I 0.65 tolerated(0.42) benign(0.387) TCGA-CC-A7IH-01 1 156641502 156641502 T A NES Silent p.L826L 0.65 TCGA-CC-A7IH-01 1 156816454 156816454 T A INSRR Missense_Mutation p.Q556L 0.18 tolerated(0.19) benign(0.218) TCGA-CC-A7IH-01 1 15707218 15707218 G A FHAD1 Missense_Mutation p.A456T 0.47 tolerated(0.43) benign(0.038) TCGA-CC-A7IH-01 1 15709776 15709776 G T FHAD1 3'UTR 0.47 TCGA-CC-A7IH-01 1 15819678 15819678 T C CASP9 Intron 0.64 TCGA-CC-A7IH-01 1 158577013 158577013 C A OR10Z1 Missense_Mutation p.P262H 0.20 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 1 158632708 158632708 C G SPTA1 Missense_Mutation p.A750P 0.05 deleterious(0) probably_damaging(0.979) TCGA-CC-A7IH-01 1 158669520 158669520 T C OR6K2 Missense_Mutation p.Q308R 0.19 tolerated(0.71) benign(0.001) TCGA-CC-A7IH-01 1 158811928 158811928 A T MNDA 5'UTR 0.65 TCGA-CC-A7IH-01 1 159176132 159176132 C G DARC Silent p.P303P 0.68 TCGA-CC-A7IH-01 1 159176146 159176146 T C DARC Missense_Mutation p.L308P 0.22 deleterious(0.01) probably_damaging(0.983) TCGA-CC-A7IH-01 1 159779343 159779343 A G FCRL6 Silent p.S252S 0.70 TCGA-CC-A7IH-01 1 160314603 160314606 GATT - NCSTN Frame_Shift_Del p.I60Afs*15 0.65 TCGA-CC-A7IH-01 1 160580406 160580406 A C SLAMF1 3'UTR 0.15 TCGA-CC-A7IH-01 1 160784465 160784465 T C LY9 Missense_Mutation p.I329T 0.62 tolerated(0.08) benign(0.039) TCGA-CC-A7IH-01 1 161479767 161479767 C T FCGR2A Silent p.I174I 0.19 TCGA-CC-A7IH-01 1 161479859 161479859 T C FCGR2A Missense_Mutation p.V205A 0.03 deleterious(0) probably_damaging(0.977) TCGA-CC-A7IH-01 1 162381882 162381882 A G SH2D1B 5'UTR 0.22 TCGA-CC-A7IH-01 1 16459692 16459692 T A EPHA2 Missense_Mutation p.E679V 0.52 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 1 166974609 166974609 A C MAEL Missense_Mutation p.M274L 0.05 tolerated(1) benign(0.015) TCGA-CC-A7IH-01 1 171753199 171753199 G T METTL13 Missense_Mutation p.C158F 0.25 deleterious(0) probably_damaging(0.996) TCGA-CC-A7IH-01 1 173526479 173526479 C A SLC9C2 Missense_Mutation p.M405I 0.22 tolerated(0.26) benign(0.068) TCGA-CC-A7IH-01 1 173842760 173842760 A T ZBTB37 Intron 0.16 TCGA-CC-A7IH-01 1 175048522 175048522 T A TNN Missense_Mutation p.C155S 0.10 deleterious(0.01) benign(0.393) TCGA-CC-A7IH-01 1 176927577 176927577 C T ASTN1 Missense_Mutation p.S547N 0.25 deleterious(0.02) possibly_damaging(0.81) TCGA-CC-A7IH-01 1 177245534 177245534 T C BRINP2 Missense_Mutation p.S326P 0.10 deleterious(0.03) benign(0.028) TCGA-CC-A7IH-01 1 179783192 179783192 T G FAM163A Missense_Mutation p.F124L 0.10 tolerated(0.06) benign(0.008) TCGA-CC-A7IH-01 1 181753861 181753861 C A CACNA1E Missense_Mutation p.H1845Q 0.20 deleterious(0) benign(0.227) TCGA-CC-A7IH-01 1 182836133 182836133 A T DHX9 Silent p.G504G 0.20 TCGA-CC-A7IH-01 1 183908097 183908097 G A COLGALT2 Missense_Mutation p.T560M 0.69 deleterious(0) probably_damaging(0.996) TCGA-CC-A7IH-01 1 190067337 190067337 T A BRINP3 Silent p.L704L 0.22 TCGA-CC-A7IH-01 1 193029224 193029224 T C TROVE2 5'UTR 0.19 TCGA-CC-A7IH-01 1 19433356 19433356 G A UBR4 Silent p.A4070A 0.45 TCGA-CC-A7IH-01 1 197115671 197115671 T A ASPM 5'UTR 0.31 TCGA-CC-A7IH-01 1 200817745 200817745 A T CAMSAP2 Silent p.S616S 0.19 TCGA-CC-A7IH-01 1 201104739 201104739 T A TMEM9 3'UTR 0.06 TCGA-CC-A7IH-01 1 201437486 201437486 C A PHLDA3 3'UTR 0.17 TCGA-CC-A7IH-01 1 202571584 202571584 A T SYT2 Silent p.P185P 0.74 TCGA-CC-A7IH-01 1 203316593 203316593 T C FMOD Missense_Mutation p.K269R 0.19 tolerated(0.26) benign(0.022) TCGA-CC-A7IH-01 1 206230897 206230897 C A AVPR1B Missense_Mutation p.H344N 0.28 deleterious(0.02) benign(0.025) TCGA-CC-A7IH-01 1 207646133 207646133 A T CR2 Silent p.P529P 0.28 TCGA-CC-A7IH-01 1 20811760 20811760 G C CAMK2N1 Missense_Mutation p.A38G 0.37 tolerated_low_confidence(1) benign(0.001) TCGA-CC-A7IH-01 1 209789949 209789949 T A LAMB3 Missense_Mutation p.Q1083H 0.17 deleterious(0) benign(0.281) TCGA-CC-A7IH-01 1 210015611 210015611 A G DIEXF Missense_Mutation p.H496R 0.27 deleterious(0.01) possibly_damaging(0.688) TCGA-CC-A7IH-01 1 210414905 210414905 C A SERTAD4 Silent p.T98T 0.17 TCGA-CC-A7IH-01 1 211192594 211192594 A T KCNH1 Missense_Mutation p.L188Q 0.50 deleterious(0.02) probably_damaging(0.992) TCGA-CC-A7IH-01 1 211751602 211751602 C A SLC30A1 Missense_Mutation p.G118V 0.21 tolerated(0.51) possibly_damaging(0.454) TCGA-CC-A7IH-01 1 213009317 213009317 T G C1orf227 Missense_Mutation p.T59P 0.70 tolerated(0.28) possibly_damaging(0.702) TCGA-CC-A7IH-01 1 213147174 213147174 C T VASH2 Intron 0.18 TCGA-CC-A7IH-01 1 217783743 217783743 C A GPATCH2 Splice_Site p.X340_splice 0.28 TCGA-CC-A7IH-01 1 21940198 21940198 T A RAP1GAP Missense_Mutation p.T197S 0.50 tolerated(0.98) benign(0.019) TCGA-CC-A7IH-01 1 220156702 220156702 T C EPRS Missense_Mutation p.I1043M 0.20 deleterious(0) benign(0.052) TCGA-CC-A7IH-01 1 223283705 223283705 C A TLR5 3'UTR 0.43 TCGA-CC-A7IH-01 1 22446623 22446623 A G WNT4 Missense_Mutation p.C326R 0.42 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 1 225270296 225270296 C T DNAH14 Missense_Mutation p.T139I 0.22 tolerated(0.16) benign(0.01) TCGA-CC-A7IH-01 1 227834348 227834348 A G ZNF678 5'UTR 0.69 TCGA-CC-A7IH-01 1 228462464 228462464 G T OBSCN Missense_Mutation p.D2334Y 0.17 possibly_damaging(0.611) TCGA-CC-A7IH-01 1 228559946 228559946 A T OBSCN Missense_Mutation p.E8113V 0.20 benign(0.167) TCGA-CC-A7IH-01 1 231360249 231360249 C T C1orf131 Intron 0.27 TCGA-CC-A7IH-01 1 231700443 231700443 G T TSNAX Missense_Mutation p.R222L 0.68 deleterious(0) probably_damaging(0.99) TCGA-CC-A7IH-01 1 231829654 231829654 A T DISC1 Silent p.T50T 0.18 TCGA-CC-A7IH-01 1 233515084 233515084 A T MLK4 Missense_Mutation p.T778S 0.20 tolerated(1) benign(0.055) TCGA-CC-A7IH-01 1 237532841 237532841 A T RYR2 Missense_Mutation p.Q106L 0.69 benign(0.011) TCGA-CC-A7IH-01 1 237666678 237666678 A T RYR2 Missense_Mutation p.K829I 0.72 benign(0.005) TCGA-CC-A7IH-01 1 237947958 237947958 G T RYR2 Nonsense_Mutation p.G4316* 0.65 TCGA-CC-A7IH-01 1 244681971 244681971 T G C1orf101 Silent p.V169V 0.22 TCGA-CC-A7IH-01 1 245772585 245772585 A T KIF26B Missense_Mutation p.I557F 0.21 deleterious(0.02) unknown(0) TCGA-CC-A7IH-01 1 247492170 247492170 T C ZNF496 Splice_Site p.X131_splice 0.19 TCGA-CC-A7IH-01 1 247769234 247769234 C A OR2G3 Missense_Mutation p.A116D 0.70 deleterious(0) possibly_damaging(0.739) TCGA-CC-A7IH-01 1 247978552 247978552 G T OR14A16 Silent p.G160G 0.22 TCGA-CC-A7IH-01 1 248366439 248366439 C T OR2M3 Missense_Mutation p.H24Y 0.20 deleterious(0.04) benign(0.031) TCGA-CC-A7IH-01 1 248487089 248487089 T A OR2M7 Missense_Mutation p.Q261L 0.22 tolerated(0.49) benign(0.008) TCGA-CC-A7IH-01 1 248685871 248685871 T C OR2G6 Silent p.S308S 0.10 TCGA-CC-A7IH-01 1 26694278 26694278 G C ZNF683 Missense_Mutation p.A42G 0.48 tolerated(0.07) benign(0.125) TCGA-CC-A7IH-01 1 27268120 27268120 A G NUDC Missense_Mutation p.E111G 0.09 deleterious(0) possibly_damaging(0.873) TCGA-CC-A7IH-01 1 31215394 31215394 G C LAPTM5 Missense_Mutation p.I30M 0.45 deleterious(0) possibly_damaging(0.682) TCGA-CC-A7IH-01 1 32101091 32101091 T A PEF1 Silent p.G19G 0.39 TCGA-CC-A7IH-01 1 32645758 32645758 C T TXLNA 5'UTR 0.34 TCGA-CC-A7IH-01 1 34174805 34174805 A G CSMD2 Missense_Mutation p.F1114L 0.34 deleterious(0) possibly_damaging(0.648) TCGA-CC-A7IH-01 1 34663030 34663030 A T C1orf94 Missense_Mutation p.R175S 0.44 tolerated(0.36) benign(0.046) TCGA-CC-A7IH-01 1 36039116 36039116 A C TFAP2E 5'UTR 0.62 TCGA-CC-A7IH-01 1 37315910 37315910 A G GRIK3 Splice_Site p.X442_splice 0.33 TCGA-CC-A7IH-01 1 41013241 41013241 A T ZNF684 3'UTR 0.44 TCGA-CC-A7IH-01 1 44595431 44595431 C T KLF17 Missense_Mutation p.S163F 0.26 tolerated(0.06) benign(0.241) TCGA-CC-A7IH-01 1 46810731 46810732 - T NSUN4 Frame_Shift_Ins p.P118Lfs*18 0.26 TCGA-CC-A7IH-01 1 50884318 50884318 G A DMRTA2 3'UTR 0.38 TCGA-CC-A7IH-01 1 52761649 52761649 A G ZFYVE9 Silent p.A1111A 0.41 TCGA-CC-A7IH-01 1 64515633 64515633 T C ROR1 Missense_Mutation p.V145A 0.34 deleterious(0.01) benign(0.305) TCGA-CC-A7IH-01 1 6679911 6679911 A G PHF13 Missense_Mutation p.T64A 0.36 deleterious(0.03) probably_damaging(0.989) TCGA-CC-A7IH-01 1 74621535 74621535 C T LRRIQ3 Missense_Mutation p.E197K 0.38 deleterious(0.01) benign(0.03) TCGA-CC-A7IH-01 1 74833633 74833633 A T FPGT-TNNI3K Nonsense_Mutation p.K550* 0.34 TCGA-CC-A7IH-01 1 74901765 74901765 C A TNNI3K Missense_Mutation p.H693N 0.45 tolerated(0.12) possibly_damaging(0.888) TCGA-CC-A7IH-01 1 75039093 75039093 A G C1orf173 Silent p.Y767Y 0.41 TCGA-CC-A7IH-01 1 87810654 87810654 G T LMO4 3'UTR 0.57 TCGA-CC-A7IH-01 1 89848365 89848365 A G GBP6 Missense_Mutation p.H432R 0.32 deleterious(0) possibly_damaging(0.905) TCGA-CC-A7IH-01 1 92428482 92428482 T C BRDT Silent p.D57D 0.34 TCGA-CC-A7IH-01 1 92495735 92495735 C A EPHX4 Silent p.S33S 0.33 TCGA-CC-A7IH-01 1 94568641 94568641 A C ABCA4 Missense_Mutation p.L167R 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-CC-A7IH-01 20 18491619 18491619 A G SEC23B Missense_Mutation p.E47G 0.44 deleterious(0.03) benign(0.052) TCGA-CC-A7IH-01 20 20144825 20144825 T A C20orf26 Silent p.A386A 0.32 TCGA-CC-A7IH-01 20 20269371 20269371 T C C20orf26 Missense_Mutation p.I972T 0.40 tolerated(0.14) benign(0.076) TCGA-CC-A7IH-01 20 2097911 2097911 A G STK35 Missense_Mutation p.M498V 0.49 tolerated(0.3) benign(0.089) TCGA-CC-A7IH-01 20 25596957 25596957 C A NANP Missense_Mutation p.M117I 0.42 tolerated(0.05) possibly_damaging(0.716) TCGA-CC-A7IH-01 20 306791 306791 G A SOX12 Missense_Mutation p.G75S 0.43 deleterious(0) probably_damaging(0.99) TCGA-CC-A7IH-01 20 30738606 30738606 G T TM9SF4 Silent p.V391V 0.46 TCGA-CC-A7IH-01 20 31023559 31023580 AGGCTGACACTAGAGAAGCTGC - ASXL1 Frame_Shift_Del p.A1016* 0.44 TCGA-CC-A7IH-01 20 3274839 3274839 A G C20orf194 Silent p.P728P 0.42 TCGA-CC-A7IH-01 20 33324500 33324500 T A NCOA6 Nonsense_Mutation p.R1986* 0.43 TCGA-CC-A7IH-01 20 33563246 33563246 G A MYH7B 5'UTR 0.20 TCGA-CC-A7IH-01 20 34242510 34242510 C T RBM12 Silent p.P245P 0.36 TCGA-CC-A7IH-01 20 35632146 35632146 T A RBL1 Nonsense_Mutation p.R999* 0.43 TCGA-CC-A7IH-01 20 3674934 3674934 C T SIGLEC1 Missense_Mutation p.V1064I 0.36 tolerated(0.41) benign(0.013) TCGA-CC-A7IH-01 20 4155893 4155893 T C SMOX Missense_Mutation p.V64A 0.39 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IH-01 20 44405762 44405762 A T WFDC3 Missense_Mutation p.C149S 0.42 deleterious(0) probably_damaging(0.998) TCGA-CC-A7IH-01 20 44418554 44418554 A T WFDC3 Missense_Mutation p.W21R 0.31 tolerated(0.23) probably_damaging(0.995) TCGA-CC-A7IH-01 20 45130946 45130946 T A ZNF334 Silent p.T344T 0.42 TCGA-CC-A7IH-01 20 4837746 4837746 T C SLC23A2 Missense_Mutation p.I609V 0.51 tolerated(0.61) benign(0) TCGA-CC-A7IH-01 20 49620472 49620472 C G KCNG1 3'UTR 0.56 TCGA-CC-A7IH-01 20 58180075 58180075 C G PHACTR3 Silent p.A2A 0.33 TCGA-CC-A7IH-01 20 60718284 60718284 C G PSMA7 Missense_Mutation p.V26L 0.73 deleterious(0.01) possibly_damaging(0.618) TCGA-CC-A7IH-01 20 60718296 60718296 C A PSMA7 Missense_Mutation p.A22S 0.71 deleterious(0.01) probably_damaging(0.999) TCGA-CC-A7IH-01 20 61947981 61947981 T C COL20A1 Silent p.S867S 0.40 TCGA-CC-A7IH-01 20 62203527 62203527 T A HELZ2 Missense_Mutation p.D71V 0.29 deleterious(0) possibly_damaging(0.766) TCGA-CC-A7IH-01 20 62366141 62366141 G T ZGPAT Missense_Mutation p.R339I 0.37 deleterious(0) possibly_damaging(0.866) TCGA-CC-A7IH-01 20 62844964 62844964 C A MYT1 Missense_Mutation p.P532H 0.56 probably_damaging(0.91) TCGA-CC-A7IH-01 20 9288511 9288511 T G PLCB4 Missense_Mutation p.L17W 0.64 deleterious(0) possibly_damaging(0.89) TCGA-CC-A7IH-01 20 9352961 9352961 T A PLCB4 Silent p.I199I 0.48 TCGA-CC-A7IH-01 20 9525119 9525119 A G PAK7 Missense_Mutation p.F589S 0.36 deleterious(0) probably_damaging(0.994) TCGA-CC-A7IH-01 21 15516949 15516949 T C LIPI Silent p.P451P 0.35 TCGA-CC-A7IH-01 21 15746215 15746215 T G HSPA13 Missense_Mutation p.K380T 0.48 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 21 30437364 30437364 A C CCT8 Silent p.G229G 0.51 TCGA-CC-A7IH-01 21 34715660 34715660 A T IFNAR1 Missense_Mutation p.M155L 0.42 tolerated(0.07) possibly_damaging(0.611) TCGA-CC-A7IH-01 21 35472408 35472408 A G SLC5A3 3'UTR 0.45 TCGA-CC-A7IH-01 21 42762601 42762601 A T MX2 Missense_Mutation p.E281V 0.47 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 21 43496123 43496123 T A UMODL1 Missense_Mutation p.L29H 0.36 deleterious(0) probably_damaging(0.938) TCGA-CC-A7IH-01 21 47320533 47320533 A G PCBP3 Missense_Mutation p.E73G 0.29 deleterious(0.02) benign(0.084) TCGA-CC-A7IH-01 22 19969151 19969151 T C ARVCF Missense_Mutation p.D160G 0.53 tolerated(0.18) probably_damaging(0.995) TCGA-CC-A7IH-01 22 23063372 23063372 C G IGLV3-19 Missense_Mutation p.P27A 0.42 tolerated(0.07) possibly_damaging(0.584) TCGA-CC-A7IH-01 22 26702074 26702074 T C SEZ6L Missense_Mutation p.L493P 0.35 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 22 26860234 26860234 G C HPS4 Silent p.P454P 0.41 TCGA-CC-A7IH-01 22 29182521 29182521 A T CCDC117 3'UTR 0.44 TCGA-CC-A7IH-01 22 31521205 31521205 C T INPP5J Intron 0.52 TCGA-CC-A7IH-01 22 31533830 31533830 C A PLA2G3 Missense_Mutation p.G311V 0.41 tolerated(0.52) benign(0) TCGA-CC-A7IH-01 22 32495287 32495287 C A SLC5A1 Silent p.P466P 0.42 TCGA-CC-A7IH-01 22 32586882 32586882 C T RFPL2 Silent p.E338E 0.44 TCGA-CC-A7IH-01 22 38321666 38321666 A T MICALL1 Splice_Site p.X361_splice 0.41 TCGA-CC-A7IH-01 22 39887461 39887461 T A MGAT3 3'UTR 0.48 TCGA-CC-A7IH-01 22 40257983 40257983 C A ENTHD1 Missense_Mutation p.V127F 0.41 deleterious(0) probably_damaging(0.977) TCGA-CC-A7IH-01 22 40708962 40708962 G T TNRC6B Missense_Mutation p.A1547S 0.37 tolerated(0.31) probably_damaging(0.995) TCGA-CC-A7IH-01 22 45970507 45970507 C T FBLN1 Missense_Mutation p.T605I 0.39 deleterious(0.03) possibly_damaging(0.86) TCGA-CC-A7IH-01 22 46719148 46719148 G T GTSE1 Silent p.T498T 0.42 TCGA-CC-A7IH-01 22 50580530 50580530 C T MOV10L1 Silent p.D697D 0.47 TCGA-CC-A7IH-01 22 51178223 51178223 T C ACR Missense_Mutation p.I128T 0.46 deleterious(0) probably_damaging(0.996) TCGA-CC-A7IH-01 2 103040730 103040730 A T IL18RAP Missense_Mutation p.L145F 0.45 deleterious(0.02) benign(0.352) TCGA-CC-A7IH-01 2 105858393 105858393 C A GPR45 Silent p.S26S 0.41 TCGA-CC-A7IH-01 2 111556610 111556610 T A ACOXL Silent p.V160V 0.50 TCGA-CC-A7IH-01 2 11273391 11273391 C A C2orf50 5'UTR 0.44 TCGA-CC-A7IH-01 2 112945110 112945110 A G FBLN7 3'UTR 0.41 TCGA-CC-A7IH-01 2 116593732 116593732 G T DPP10 Splice_Site p.X655_splice 0.35 TCGA-CC-A7IH-01 2 118854041 118854041 G T INSIG2 5'UTR 0.67 TCGA-CC-A7IH-01 2 120020691 120020691 G T STEAP3 Missense_Mutation p.W425L 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-CC-A7IH-01 2 121743964 121743964 G T GLI2 Silent p.G689G 0.47 TCGA-CC-A7IH-01 2 129026114 129026114 C T HS6ST1 Silent p.R286R 0.26 TCGA-CC-A7IH-01 2 131803692 131803692 T C ARHGEF4 Missense_Mutation p.L668P 0.24 deleterious(0) probably_damaging(0.982) TCGA-CC-A7IH-01 2 152522831 152522831 A T NEB Missense_Mutation p.Y1602N 0.39 probably_damaging(0.958) TCGA-CC-A7IH-01 2 153575126 153575126 T A ARL6IP6 5'UTR 0.50 TCGA-CC-A7IH-01 2 160087091 160087091 C A TANC1 Silent p.P1718P 0.38 TCGA-CC-A7IH-01 2 162895528 162895528 C A DPP4 Missense_Mutation p.Q141H 0.34 tolerated(0.07) benign(0.187) TCGA-CC-A7IH-01 2 166897949 166897949 G A SCN1A Missense_Mutation p.P736L 0.43 deleterious(0.02) probably_damaging(0.941) TCGA-CC-A7IH-01 2 168106056 168106056 A G XIRP2 Silent p.L2718L 0.38 TCGA-CC-A7IH-01 2 169681160 169681160 A C NOSTRIN Missense_Mutation p.S44R 0.37 tolerated(0.07) possibly_damaging(0.87) TCGA-CC-A7IH-01 2 170465241 170465241 A G PPIG Missense_Mutation p.K117R 0.43 deleterious(0.04) benign(0.377) TCGA-CC-A7IH-01 2 171716437 171716437 T A GAD1 3'UTR 0.43 TCGA-CC-A7IH-01 2 174230178 174230178 A C CDCA7 Splice_Site p.X299_splice 0.50 TCGA-CC-A7IH-01 2 179431803 179431803 T C TTN Silent p.L26352L 0.35 TCGA-CC-A7IH-01 2 179544108 179544108 G T TTN Missense_Mutation p.P11234T 0.35 TCGA-CC-A7IH-01 2 179587117 179587117 T G TTN Missense_Mutation p.Q7466P 0.40 TCGA-CC-A7IH-01 2 19552136 19552136 T C OSR1 Missense_Mutation p.Q234R 0.41 tolerated(0.13) benign(0.148) TCGA-CC-A7IH-01 2 196729249 196729249 T A DNAH7 Missense_Mutation p.H2377L 0.47 deleterious(0) possibly_damaging(0.47) TCGA-CC-A7IH-01 2 196913052 196913052 T A DNAH7 Missense_Mutation p.E73V 0.43 tolerated_low_confidence(0.06) benign(0.075) TCGA-CC-A7IH-01 2 197183894 197183894 C T HECW2 Missense_Mutation p.D574N 0.38 tolerated_low_confidence(0.13) benign(0.031) TCGA-CC-A7IH-01 2 1983303 1983303 C A MYT1L Nonsense_Mutation p.E27* 0.34 TCGA-CC-A7IH-01 2 198570872 198570872 A T MARS2 Missense_Mutation p.E248V 0.40 deleterious(0) benign(0.431) TCGA-CC-A7IH-01 2 202593826 202593826 C T ALS2 Silent p.K887K 0.52 TCGA-CC-A7IH-01 2 202901205 202901205 T C FZD7 3'UTR 0.42 TCGA-CC-A7IH-01 2 206036933 206036933 A T PARD3B Splice_Site p.X479_splice 0.37 TCGA-CC-A7IH-01 2 210557752 210557752 T A MAP2 Silent p.P286P 0.43 TCGA-CC-A7IH-01 2 210805966 210805966 T C UNC80 Missense_Mutation p.L2157P 0.45 possibly_damaging(0.813) TCGA-CC-A7IH-01 2 21229513 21229513 A T APOB Missense_Mutation p.S3409R 0.44 possibly_damaging(0.548) TCGA-CC-A7IH-01 2 215833480 215833480 A G ABCA12 Silent p.D1914D 0.37 TCGA-CC-A7IH-01 2 215914355 215914355 A T ABCA12 Missense_Mutation p.S230T 0.44 tolerated(0.23) benign(0.011) TCGA-CC-A7IH-01 2 218750502 218750502 T C TNS1 Missense_Mutation p.I236V 0.38 deleterious(0) probably_damaging(0.996) TCGA-CC-A7IH-01 2 220396495 220396495 G T ASIC4 Missense_Mutation p.G327W 0.38 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IH-01 2 223169909 223169909 C A CCDC140 3'UTR 0.33 TCGA-CC-A7IH-01 2 224866418 224866418 A T SERPINE2 Missense_Mutation p.L79Q 0.41 deleterious(0.02) probably_damaging(0.988) TCGA-CC-A7IH-01 2 227886777 227886777 G A COL4A4 Silent p.G1401G 0.42 TCGA-CC-A7IH-01 2 234255702 234255702 G C SAG 3'Flank 0.16 TCGA-CC-A7IH-01 2 234368877 234368877 A C DGKD Missense_Mutation p.Q956P 0.04 deleterious(0.03) benign(0.206) TCGA-CC-A7IH-01 2 23918605 23918605 T A KLHL29 Missense_Mutation p.L552Q 0.33 deleterious(0.03) probably_damaging(0.961) TCGA-CC-A7IH-01 2 242380941 242380941 C T FARP2 Missense_Mutation p.L461F 0.45 tolerated(0.06) benign(0.163) TCGA-CC-A7IH-01 2 26540974 26540974 A C GPR113 Missense_Mutation p.C66G 0.45 deleterious_low_confidence(0.04) benign(0) TCGA-CC-A7IH-01 2 27302028 27302028 A G EMILIN1 Missense_Mutation p.Y32C 0.33 probably_damaging(0.999) TCGA-CC-A7IH-01 2 27587223 27587223 T G EIF2B4 3'Flank 0.21 TCGA-CC-A7IH-01 2 29169340 29169340 A T WDR43 Missense_Mutation p.D610V 0.34 deleterious(0) benign(0.348) TCGA-CC-A7IH-01 2 37599570 37599570 T A QPCT Missense_Mutation p.Y299N 0.43 tolerated(0.3) benign(0.003) TCGA-CC-A7IH-01 2 44933426 44933426 G A CAMKMT Silent p.R146R 0.43 TCGA-CC-A7IH-01 2 48602463 48602463 A G FOXN2 Missense_Mutation p.I393V 0.43 tolerated(0.71) probably_damaging(0.99) TCGA-CC-A7IH-01 2 50149221 50149221 G T NRXN1 Nonsense_Mutation p.S1502* 0.43 TCGA-CC-A7IH-01 2 54882216 54882216 A G SPTBN1 Silent p.S1944S 0.39 TCGA-CC-A7IH-01 2 62112155 62112155 C G CCT4 Missense_Mutation p.M60I 0.48 deleterious(0.02) possibly_damaging(0.782) TCGA-CC-A7IH-01 2 71376544 71376544 A G MPHOSPH10 Silent p.L619L 0.39 TCGA-CC-A7IH-01 2 73315575 73315575 T C RAB11FIP5 Missense_Mutation p.S391G 0.37 tolerated(0.07) benign(0.002) TCGA-CC-A7IH-01 2 74883712 74883712 C A SEMA4F Missense_Mutation p.S66Y 0.43 deleterious(0) probably_damaging(0.953) TCGA-CC-A7IH-01 2 98797635 98797635 T C VWA3B Missense_Mutation p.I424T 0.37 deleterious(0) possibly_damaging(0.521) TCGA-CC-A7IH-01 3 111312691 111312691 G T ZBED2 Missense_Mutation p.Q120K 0.44 tolerated(0.88) benign(0.051) TCGA-CC-A7IH-01 3 111394182 111394182 C A PLCXD2 Silent p.V30V 0.42 TCGA-CC-A7IH-01 3 112184942 112184942 G A BTLA 3'UTR 0.38 TCGA-CC-A7IH-01 3 112358178 112358178 T C CCDC80 Missense_Mutation p.Q192R 0.47 tolerated(0.16) possibly_damaging(0.728) TCGA-CC-A7IH-01 3 112546319 112546319 C A CD200R1L Missense_Mutation p.D109Y 0.37 deleterious(0.04) benign(0.396) TCGA-CC-A7IH-01 3 112993376 112993376 A T BOC Silent p.P463P 0.47 TCGA-CC-A7IH-01 3 118865983 118865983 A G C3orf30 Missense_Mutation p.E316G 0.42 tolerated(0.28) benign(0.277) TCGA-CC-A7IH-01 3 120401025 120401028 TTCT - HGD 5'UTR 0.41 TCGA-CC-A7IH-01 3 121208148 121208148 C T POLQ Silent p.Q1210Q 0.42 TCGA-CC-A7IH-01 3 123051454 123051454 A T ADCY5 Missense_Mutation p.M492K 0.36 tolerated(0.75) benign(0.023) TCGA-CC-A7IH-01 3 125775394 125775416 ATGGCCAGGCAATGCACCACGAT - SLC41A3 Intron 0.29 TCGA-CC-A7IH-01 3 127298924 127298924 T C TPRA1 Silent p.P22P 0.11 TCGA-CC-A7IH-01 3 127642796 127642796 A T KBTBD12 Missense_Mutation p.S298C 0.46 deleterious_low_confidence(0.03) possibly_damaging(0.473) TCGA-CC-A7IH-01 3 12858225 12858225 T A CAND2 Silent p.L598L 0.85 TCGA-CC-A7IH-01 3 130290136 130290136 T G COL6A6 Missense_Mutation p.M959R 0.42 deleterious(0) probably_damaging(0.95) TCGA-CC-A7IH-01 3 132075574 132075574 A T ACPP Missense_Mutation p.E338V 0.26 deleterious(0.01) benign(0.426) TCGA-CC-A7IH-01 3 133647332 133647332 A G C3orf36 Missense_Mutation p.C106R 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.588) TCGA-CC-A7IH-01 3 13401819 13401819 T C NUP210 Missense_Mutation p.N702S 0.88 tolerated(0.22) benign(0.009) TCGA-CC-A7IH-01 3 137787119 137787119 G T DZIP1L Missense_Mutation p.P569Q 0.33 tolerated(0.25) possibly_damaging(0.668) TCGA-CC-A7IH-01 3 141290358 141290358 T C RASA2 Silent p.F377F 0.32 TCGA-CC-A7IH-01 3 141497734 141497734 G T GRK7 Missense_Mutation p.G203V 0.41 deleterious(0) probably_damaging(0.998) TCGA-CC-A7IH-01 3 141884551 141884551 T C GK5 Silent p.P501P 0.40 TCGA-CC-A7IH-01 3 142145680 142145680 T A XRN1 Silent p.S104S 0.58 TCGA-CC-A7IH-01 3 143708572 143708572 G A C3orf58 Silent p.R394R 0.49 TCGA-CC-A7IH-01 3 14561754 14561754 A G GRIP2 RNA 0.74 TCGA-CC-A7IH-01 3 14860937 14860937 C A FGD5 Nonsense_Mutation p.S120* 0.85 TCGA-CC-A7IH-01 3 151156029 151156029 T C IGSF10 Missense_Mutation p.N2107S 0.42 deleterious(0.05) probably_damaging(0.91) TCGA-CC-A7IH-01 3 151160801 151160801 T C IGSF10 Silent p.P1978P 0.40 TCGA-CC-A7IH-01 3 155838579 155838579 T A KCNAB1 Missense_Mutation p.L60Q 0.41 tolerated_low_confidence(0.09) benign(0.021) TCGA-CC-A7IH-01 3 157031464 157031464 C A VEPH1 Silent p.G652G 0.36 TCGA-CC-A7IH-01 3 158384361 158384361 C A LXN 3'UTR 0.46 TCGA-CC-A7IH-01 3 160803874 160803874 A G B3GALNT1 Silent p.H223H 0.35 TCGA-CC-A7IH-01 3 167183368 167183368 T A SERPINI2 Missense_Mutation p.Q191L 0.41 deleterious(0.05) possibly_damaging(0.678) TCGA-CC-A7IH-01 3 169663993 169663993 A T RP11-379K17.4 RNA 0.35 TCGA-CC-A7IH-01 3 171395376 171395376 T C PLD1 Missense_Mutation p.Q659R 0.48 deleterious(0) probably_damaging(0.965) TCGA-CC-A7IH-01 3 180325722 180325722 G T TTC14 Intron 0.54 TCGA-CC-A7IH-01 3 182872047 182872047 T G LAMP3 Missense_Mutation p.H61P 0.34 tolerated(0.32) benign(0.002) TCGA-CC-A7IH-01 3 183689367 183689367 T A ABCC5 Missense_Mutation p.D582V 0.42 tolerated(0.06) benign(0.374) TCGA-CC-A7IH-01 3 189690681 189690681 A G LEPREL1 Missense_Mutation p.C561R 0.43 deleterious(0) probably_damaging(0.913) TCGA-CC-A7IH-01 3 189838134 189838134 C T LEPREL1 Silent p.G129G 0.38 TCGA-CC-A7IH-01 3 190167645 190167645 A G TMEM207 5'UTR 0.21 TCGA-CC-A7IH-01 3 190347188 190347188 A G IL1RAP Missense_Mutation p.I318V 0.37 tolerated(0.43) benign(0.011) TCGA-CC-A7IH-01 3 193332727 193332727 A T OPA1 Missense_Mutation p.Q83L 0.07 tolerated(0.14) benign(0.001) TCGA-CC-A7IH-01 3 193374929 193374929 G T OPA1 Nonsense_Mutation p.E729* 0.49 TCGA-CC-A7IH-01 3 195112843 195112843 T A ACAP2 Silent p.A29A 0.38 TCGA-CC-A7IH-01 3 195451813 195451813 A T MUC20 Silent p.S113S 0.14 TCGA-CC-A7IH-01 3 37774280 37774280 A C ITGA9 Silent p.S715S 0.86 TCGA-CC-A7IH-01 3 38766700 38766700 A C SCN10A Missense_Mutation p.W1065G 0.77 tolerated(0.37) benign(0.008) TCGA-CC-A7IH-01 3 38926834 38926834 A G SCN11A Silent p.F1003F 0.87 TCGA-CC-A7IH-01 3 41266123 41266150 TACCACAGCTCCTTCTCTGAGTGGTAAA AACC CTNNB1 In_Frame_Del p.T42_K49del 0.09 TCGA-CC-A7IH-01 3 46757130 46757130 C A PRSS50 Missense_Mutation p.R122L 0.85 deleterious(0.04) probably_damaging(0.997) TCGA-CC-A7IH-01 3 46937344 46937344 G T PTH1R Missense_Mutation p.G100C 0.89 tolerated(0.05) benign(0.319) TCGA-CC-A7IH-01 3 47042832 47042832 G T NBEAL2 Silent p.L1516L 0.88 TCGA-CC-A7IH-01 3 47603952 47603952 A G CSPG5 3'UTR 0.83 TCGA-CC-A7IH-01 3 49293846 49293846 T C CCDC36 Missense_Mutation p.W306R 0.86 tolerated(0.44) benign(0.002) TCGA-CC-A7IH-01 3 52554842 52554842 G T STAB1 Missense_Mutation p.R1910L 0.76 tolerated(0.44) benign(0.079) TCGA-CC-A7IH-01 3 53700544 53700544 G A CACNA1D Nonsense_Mutation p.W366* 0.05 TCGA-CC-A7IH-01 3 54958771 54958771 T A LRTM1 Missense_Mutation p.Q160L 0.88 tolerated(0.09) benign(0.124) TCGA-CC-A7IH-01 3 67048735 67048735 T C KBTBD8 5'UTR 0.24 TCGA-CC-A7IH-01 3 67049479 67049479 C T KBTBD8 Missense_Mutation p.H31Y 0.35 tolerated(0.48) benign(0.145) TCGA-CC-A7IH-01 3 69097054 69097054 T C TMF1 Missense_Mutation p.I268V 0.44 tolerated_low_confidence(0.05) benign(0.066) TCGA-CC-A7IH-01 3 77629214 77629214 A T ROBO2 Silent p.A831A 0.60 TCGA-CC-A7IH-01 3 78684981 78684981 C A ROBO1 Missense_Mutation p.Q1105H 0.29 deleterious(0.02) benign(0.34) TCGA-CC-A7IH-01 3 78711213 78711213 A T ROBO1 Missense_Mutation p.L673Q 0.30 deleterious(0) probably_damaging(0.991) TCGA-CC-A7IH-01 3 96585699 96585699 G A EPHA6 Missense_Mutation p.G139E 0.40 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 3 9974301 9974301 A G IL17RC Missense_Mutation p.K537R 0.85 tolerated(0.64) benign(0.002) TCGA-CC-A7IH-01 4 102783820 102783820 A T BANK1 Missense_Mutation p.L254F 0.40 deleterious(0.02) probably_damaging(0.984) TCGA-CC-A7IH-01 4 104119506 104119506 T A CENPE 5'UTR 0.34 TCGA-CC-A7IH-01 4 110772808 110772808 A T LRIT3 Missense_Mutation p.T89S 0.05 tolerated(0.22) benign(0.395) TCGA-CC-A7IH-01 4 110904598 110904598 A G EGF Missense_Mutation p.N798D 0.49 tolerated(0.29) benign(0.008) TCGA-CC-A7IH-01 4 122301943 122301943 A T QRFPR 5'UTR 0.44 TCGA-CC-A7IH-01 4 125592808 125592808 C A ANKRD50 Missense_Mutation p.D542Y 0.42 deleterious(0) probably_damaging(0.997) TCGA-CC-A7IH-01 4 135121999 135121999 A T PABPC4L Nonsense_Mutation p.L117* 0.42 TCGA-CC-A7IH-01 4 140651774 140651774 G T MAML3 Silent p.S709S 0.57 TCGA-CC-A7IH-01 4 142145639 142145639 A T ZNF330 Splice_Site p.X41_splice 0.44 TCGA-CC-A7IH-01 4 142949992 142949992 C A INPP4B Missense_Mutation p.M906I 0.52 tolerated(0.15) benign(0.099) TCGA-CC-A7IH-01 4 151504564 151504564 T C MAB21L2 Missense_Mutation p.I128T 0.35 deleterious(0.02) possibly_damaging(0.827) TCGA-CC-A7IH-01 4 153802126 153802126 G T ARFIP1 Missense_Mutation p.Q141H 0.39 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IH-01 4 155156385 155156385 T A DCHS2 Missense_Mutation p.D2685V 0.44 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 4 155226268 155226268 T C DCHS2 Silent p.Q1337Q 0.38 TCGA-CC-A7IH-01 4 158142912 158142912 A G GRIA2 Missense_Mutation p.H61R 0.44 tolerated(0.24) benign(0.185) TCGA-CC-A7IH-01 4 15938116 15938116 T A FGFBP1 Missense_Mutation p.Q47L 0.59 tolerated(0.06) possibly_damaging(0.903) TCGA-CC-A7IH-01 4 162306860 162306860 T A FSTL5 3'UTR 0.55 TCGA-CC-A7IH-01 4 168155255 168155255 C A SPOCK3 Missense_Mutation p.A24S 0.37 tolerated_low_confidence(0.48) benign(0.396) TCGA-CC-A7IH-01 4 177142394 177142394 A G ASB5 Silent p.V194V 0.40 TCGA-CC-A7IH-01 4 17805890 17805890 C A DCAF16 5'UTR 0.54 TCGA-CC-A7IH-01 4 183659668 183659668 A G TENM3 Missense_Mutation p.D1117G 0.46 deleterious(0) benign(0.005) TCGA-CC-A7IH-01 4 184633990 184633990 A G TRAPPC11 3'UTR 0.50 TCGA-CC-A7IH-01 4 186068258 186068258 C T SLC25A4 3'UTR 0.71 TCGA-CC-A7IH-01 4 186997908 186997908 A C TLR3 Silent p.V45V 0.39 TCGA-CC-A7IH-01 4 20255500 20255500 A G SLIT2 Missense_Mutation p.N21S 0.27 tolerated(0.58) benign(0) TCGA-CC-A7IH-01 4 20525440 20525440 C A SLIT2 Missense_Mutation p.H396Q 0.06 tolerated(1) benign(0.002) TCGA-CC-A7IH-01 4 25160667 25160667 T G SEPSECS Silent p.A59A 0.59 TCGA-CC-A7IH-01 4 3949736 3949736 T A FAM86EP RNA 0.50 TCGA-CC-A7IH-01 4 40245945 40245945 T C RHOH 3'UTR 0.33 TCGA-CC-A7IH-01 4 55152024 55152024 T G PDGFRA Missense_Mutation p.L819R 0.38 deleterious(0) probably_damaging(0.997) TCGA-CC-A7IH-01 4 55564702 55564702 C A KIT Nonsense_Mutation p.S197* 0.45 TCGA-CC-A7IH-01 4 5578129 5578129 G A EVC2 Missense_Mutation p.A1037V 0.51 tolerated(0.16) benign(0.063) TCGA-CC-A7IH-01 4 55973948 55973948 G C KDR Missense_Mutation p.I456M 0.38 deleterious(0) probably_damaging(0.91) TCGA-CC-A7IH-01 4 5642427 5642427 C A EVC2 Missense_Mutation p.M428I 0.55 tolerated(0.19) benign(0.015) TCGA-CC-A7IH-01 4 57250311 57250311 T A AASDH Missense_Mutation p.H52L 0.40 deleterious(0.02) benign(0.139) TCGA-CC-A7IH-01 4 66356415 66356415 G C EPHA5 Missense_Mutation p.P361R 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-CC-A7IH-01 4 66467379 66467379 T A EPHA5 Missense_Mutation p.E297V 0.42 deleterious(0.02) possibly_damaging(0.543) TCGA-CC-A7IH-01 4 66467935 66467935 A T EPHA5 Missense_Mutation p.W112R 0.44 deleterious(0) probably_damaging(0.996) TCGA-CC-A7IH-01 4 68780363 68780363 A G TMPRSS11A Silent p.D349D 0.12 TCGA-CC-A7IH-01 4 68795630 68795630 A G TMPRSS11A Missense_Mutation p.L153S 0.48 deleterious(0.01) benign(0.273) TCGA-CC-A7IH-01 4 75250573 75250573 T C EREG 3'UTR 0.04 TCGA-CC-A7IH-01 4 77675938 77675938 C T SHROOM3 Silent p.A1434A 0.38 TCGA-CC-A7IH-01 4 8029484 8029484 A T ABLIM2 Splice_Site p.X423_splice 0.36 TCGA-CC-A7IH-01 4 87732253 87732253 C A PTPN13 Missense_Mutation p.Q2457K 0.26 deleterious(0) probably_damaging(0.996) TCGA-CC-A7IH-01 4 91229854 91229854 A G CCSER1 Missense_Mutation p.E140G 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-CC-A7IH-01 5 102444366 102444366 C T GIN1 Missense_Mutation p.A16T 0.35 tolerated(0.09) benign(0.313) TCGA-CC-A7IH-01 5 126253879 126253879 T C MARCH3 5'UTR 0.38 TCGA-CC-A7IH-01 5 128863439 128863439 A T ADAMTS19 Splice_Site p.X357_splice 0.42 TCGA-CC-A7IH-01 5 129243821 129243821 A T CHSY3 Missense_Mutation p.Y285F 0.46 tolerated(0.89) benign(0.05) TCGA-CC-A7IH-01 5 131647952 131647952 A G SLC22A4 Silent p.S164S 0.09 TCGA-CC-A7IH-01 5 132158362 132158362 T G SHROOM1 3'UTR 0.36 TCGA-CC-A7IH-01 5 137284750 137284750 T C FAM13B Missense_Mutation p.K663R 0.46 tolerated(1) benign(0) TCGA-CC-A7IH-01 5 140183244 140183244 T A PCDHA3 Intron 0.38 TCGA-CC-A7IH-01 5 140202294 140202294 T G PCDHA5 Missense_Mutation p.Y312D 0.41 tolerated_low_confidence(0.26) benign(0.003) TCGA-CC-A7IH-01 5 140308412 140308412 A G PCDHAC1 Silent p.P645P 0.32 TCGA-CC-A7IH-01 5 140531986 140531986 G T PCDHB6 Missense_Mutation p.R716S 0.46 deleterious(0.01) benign(0.02) TCGA-CC-A7IH-01 5 140553027 140553027 A T PCDHB7 Missense_Mutation p.E204V 0.53 deleterious_low_confidence(0.02) benign(0.036) TCGA-CC-A7IH-01 5 140560 140560 T A PLEKHG4B Silent p.S46S 0.48 TCGA-CC-A7IH-01 5 140572771 140572771 G T PCDHB10 Missense_Mutation p.D216Y 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-CC-A7IH-01 5 140723872 140723872 A C PCDHGA3 Missense_Mutation p.D91A 0.39 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CC-A7IH-01 5 1409895 1409895 G T SLC6A3 Missense_Mutation p.L447I 0.54 tolerated(0.32) benign(0.028) TCGA-CC-A7IH-01 5 14336822 14336822 A G TRIO Missense_Mutation p.T678A 0.37 benign(0) TCGA-CC-A7IH-01 5 145239349 145239349 A T GRXCR2 Missense_Mutation p.C232S 0.05 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IH-01 5 150930189 150930189 G A FAT2 Missense_Mutation p.L1514F 0.44 benign(0.034) TCGA-CC-A7IH-01 5 154311783 154311783 A G GEMIN5 Silent p.I179I 0.43 TCGA-CC-A7IH-01 5 156590341 156590341 G T FAM71B Missense_Mutation p.A312E 0.56 deleterious(0) possibly_damaging(0.886) TCGA-CC-A7IH-01 5 159344340 159344340 G A ADRA1B Missense_Mutation p.R143H 0.44 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IH-01 5 162900512 162900512 A G HMMR Missense_Mutation p.K285E 0.43 tolerated(0.25) benign(0.057) TCGA-CC-A7IH-01 5 171509351 171509351 C T STK10 Silent p.Q656Q 0.40 TCGA-CC-A7IH-01 5 172097160 172097160 A T NEURL1B Missense_Mutation p.E135V 0.33 deleterious(0) probably_damaging(0.965) TCGA-CC-A7IH-01 5 175112498 175112498 A T HRH2 Missense_Mutation p.H388L 0.42 tolerated_low_confidence(0.65) benign(0) TCGA-CC-A7IH-01 5 176886227 176886227 A G DBN1 Missense_Mutation p.I335T 0.17 tolerated(0.32) benign(0.011) TCGA-CC-A7IH-01 5 178548746 178548746 T A ADAMTS2 Missense_Mutation p.I1032F 0.35 tolerated(0.44) benign(0.001) TCGA-CC-A7IH-01 5 31534522 31534522 T C C5orf22 Silent p.F75F 0.26 TCGA-CC-A7IH-01 5 34922851 34922851 G A BRIX1 Missense_Mutation p.R163Q 0.36 deleterious(0) probably_damaging(0.985) TCGA-CC-A7IH-01 5 3600372 3600372 C A IRX1 Missense_Mutation p.P437Q 0.44 tolerated(0.09) benign(0.169) TCGA-CC-A7IH-01 5 37206332 37206332 T A C5orf42 Missense_Mutation p.Q1039L 0.09 deleterious(0.03) benign(0.083) TCGA-CC-A7IH-01 5 37721261 37721261 G A WDR70 Missense_Mutation p.M487I 0.42 tolerated(0.41) benign(0.014) TCGA-CC-A7IH-01 5 40981757 40981757 G T C7 3'UTR 0.39 TCGA-CC-A7IH-01 5 5242253 5242253 A T ADAMTS16 Missense_Mutation p.S871C 0.42 deleterious(0.02) possibly_damaging(0.571) TCGA-CC-A7IH-01 5 54603486 54603486 C A DHX29 5'UTR 0.52 TCGA-CC-A7IH-01 5 59899225 59899225 C A DEPDC1B Missense_Mutation p.R412I 0.32 deleterious(0.01) possibly_damaging(0.851) TCGA-CC-A7IH-01 5 68737744 68737744 T C MARVELD2 3'UTR 0.56 TCGA-CC-A7IH-01 5 71016426 71016426 T C CARTPT Missense_Mutation p.L112P 0.49 deleterious(0) probably_damaging(0.995) TCGA-CC-A7IH-01 5 71519592 71519592 T A MRPS27 Missense_Mutation p.Q308L 0.48 tolerated(0.36) benign(0.005) TCGA-CC-A7IH-01 5 72188978 72188978 G T TNPO1 Missense_Mutation p.V601F 0.43 deleterious(0) possibly_damaging(0.725) TCGA-CC-A7IH-01 5 72201205 72201205 A G TNPO1 Missense_Mutation p.K889E 0.35 deleterious(0.05) benign(0.03) TCGA-CC-A7IH-01 5 72798773 72798773 C A BTF3 Silent p.I116I 0.36 TCGA-CC-A7IH-01 5 72868323 72868323 A G UTP15 Missense_Mutation p.Y228C 0.38 tolerated(0.11) probably_damaging(0.985) TCGA-CC-A7IH-01 5 93989111 93989111 A T ANKRD32 Silent p.I339I 0.44 TCGA-CC-A7IH-01 6 107076839 107076839 A G RTN4IP1 Missense_Mutation p.W20R 0.47 tolerated_low_confidence(0.19) benign(0.007) TCGA-CC-A7IH-01 6 116757673 116757673 A T DSE Missense_Mutation p.Q681L 0.47 deleterious(0.03) benign(0.124) TCGA-CC-A7IH-01 6 116832815 116832815 T G FAM26E 5'UTR 0.40 TCGA-CC-A7IH-01 6 11768527 11768527 G A ADTRP Silent p.A99A 0.21 TCGA-CC-A7IH-01 6 119136767 119136767 T C MCM9 Silent p.P884P 0.34 TCGA-CC-A7IH-01 6 12290873 12290873 T G EDN1 Missense_Mutation p.L4W 0.24 deleterious(0.02) possibly_damaging(0.784) TCGA-CC-A7IH-01 6 123319264 123319264 T C CLVS2 Silent p.Y114Y 0.36 TCGA-CC-A7IH-01 6 132006562 132006562 A T ENPP3 Silent p.I393I 0.47 TCGA-CC-A7IH-01 6 13588600 13588600 G A SIRT5 Silent p.K51K 0.23 TCGA-CC-A7IH-01 6 152765648 152765648 G T SYNE1 Silent p.L1245L 0.53 TCGA-CC-A7IH-01 6 159654905 159654905 G T FNDC1 Missense_Mutation p.A1121S 0.61 tolerated_low_confidence(0.75) unknown(0) TCGA-CC-A7IH-01 6 168366615 168366615 A T MLLT4 3'Flank 0.40 TCGA-CC-A7IH-01 6 168709146 168709146 A T DACT2 Missense_Mutation p.C431S 0.43 tolerated(0.06) benign(0.259) TCGA-CC-A7IH-01 6 17706588 17706588 C A NUP153 Missense_Mutation p.G11C 0.12 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-CC-A7IH-01 6 22287693 22287693 G T PRL Missense_Mutation p.H208N 0.29 tolerated(0.2) benign(0.07) TCGA-CC-A7IH-01 6 26197264 26197264 A C HIST1H3D Missense_Mutation p.V72G 0.18 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-CC-A7IH-01 6 27100194 27100194 C A HIST1H2BJ Silent p.V112V 0.19 TCGA-CC-A7IH-01 6 27216671 27216671 A T PRSS16 Missense_Mutation p.I95L 0.19 deleterious(0.01) benign(0.1) TCGA-CC-A7IH-01 6 27279131 27279131 A T POM121L2 Missense_Mutation p.S273R 0.20 tolerated(0.21) benign(0.003) TCGA-CC-A7IH-01 6 28402633 28402633 T C ZSCAN23 Missense_Mutation p.Q260R 0.23 deleterious(0.02) probably_damaging(0.994) TCGA-CC-A7IH-01 6 28501974 28501974 T G GPX5 3'UTR 0.22 TCGA-CC-A7IH-01 6 28962885 28962885 T C ZNF311 Missense_Mutation p.R632G 0.18 deleterious(0) possibly_damaging(0.643) TCGA-CC-A7IH-01 6 29591692 29591692 G T GABBR1 Missense_Mutation p.A256D 0.20 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IH-01 6 29599361 29599361 T A GABBR1 Missense_Mutation p.H34L 0.22 deleterious_low_confidence(0.03) benign(0.183) TCGA-CC-A7IH-01 6 30917770 30917770 A G DPCR1 Missense_Mutation p.E510G 0.28 tolerated(0.19) benign(0.013) TCGA-CC-A7IH-01 6 30955854 30955854 A C MUC21 Silent p.P528P 0.16 TCGA-CC-A7IH-01 6 30956084 30956084 T A MUC21 3'UTR 0.20 TCGA-CC-A7IH-01 6 31627616 31627616 C A C6orf47 Nonsense_Mutation p.E37* 0.18 TCGA-CC-A7IH-01 6 31691511 31691511 T C C6orf25 Missense_Mutation p.C53R 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-CC-A7IH-01 6 31735467 31735467 C A VWA7 Missense_Mutation p.G523V 0.21 tolerated(0.21) benign(0.006) TCGA-CC-A7IH-01 6 31779395 31779395 C A HSPA1L Nonsense_Mutation p.E119* 0.25 TCGA-CC-A7IH-01 6 31795883 31795883 G T HSPA1B Silent p.G52G 0.18 TCGA-CC-A7IH-01 6 31839119 31839119 A C SLC44A4 Missense_Mutation p.F225V 0.04 deleterious(0.02) benign(0.007) TCGA-CC-A7IH-01 6 3227741 3227741 C A TUBB2B Missense_Mutation p.G13C 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-CC-A7IH-01 6 32905064 32905064 A G HLA-DMB Silent p.N169N 0.16 TCGA-CC-A7IH-01 6 33646238 33646238 A G ITPR3 Missense_Mutation p.Q1230R 0.28 tolerated(0.19) benign(0.281) TCGA-CC-A7IH-01 6 34003458 34003458 T A GRM4 Missense_Mutation p.Q810L 0.18 deleterious(0.01) possibly_damaging(0.848) TCGA-CC-A7IH-01 6 35260758 35260758 G T ZNF76 Silent p.A422A 0.22 TCGA-CC-A7IH-01 6 36169160 36169160 A C BRPF3 Missense_Mutation p.Q354P 0.15 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IH-01 6 36238348 36238348 C T PNPLA1 Silent p.L38L 0.27 TCGA-CC-A7IH-01 6 36275745 36275745 A C PNPLA1 3'UTR 0.26 TCGA-CC-A7IH-01 6 37349083 37349083 G T RNF8 Missense_Mutation p.S465I 0.21 deleterious(0) possibly_damaging(0.83) TCGA-CC-A7IH-01 6 38709609 38709609 A T DNAH8 Silent p.P196P 0.21 TCGA-CC-A7IH-01 6 38994404 38994404 T A DNAH8 Silent p.V4382V 0.24 TCGA-CC-A7IH-01 6 39040691 39040691 T A GLP1R Missense_Mutation p.I188N 0.27 deleterious(0) probably_damaging(0.997) TCGA-CC-A7IH-01 6 39387773 39387773 A T KIF6 Silent p.S587S 0.22 TCGA-CC-A7IH-01 6 4057278 4057278 A G PRPF4B Missense_Mutation p.K864E 0.20 tolerated(0.27) unknown(0) TCGA-CC-A7IH-01 6 41303577 41303577 A T NCR2 5'UTR 0.19 TCGA-CC-A7IH-01 6 41470273 41470273 G A RP11-328M4.3 RNA 0.20 TCGA-CC-A7IH-01 6 41739273 41739273 T A FRS3 Splice_Site p.X189_splice 0.28 TCGA-CC-A7IH-01 6 41888853 41888853 G T MED20 5'Flank 0.25 TCGA-CC-A7IH-01 6 43109672 43109672 T A PTK7 Missense_Mutation p.F599Y 0.29 tolerated(1) benign(0.003) TCGA-CC-A7IH-01 6 43155101 43155101 T C CUL9 Missense_Mutation p.L502P 0.14 deleterious(0) probably_damaging(0.998) TCGA-CC-A7IH-01 6 43555153 43555153 A T POLH Silent p.A139A 0.28 TCGA-CC-A7IH-01 6 44243711 44243711 T A TMEM151B Missense_Mutation p.L383Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IH-01 6 46620420 46620420 T C CYP39A1 5'UTR 0.32 TCGA-CC-A7IH-01 6 46721651 46721651 T A ANKRD66 Missense_Mutation p.I174N 0.52 deleterious(0.02) probably_damaging(0.982) TCGA-CC-A7IH-01 6 46826559 46826559 C A GPR116 Missense_Mutation p.L1027F 0.27 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 6 46976727 46976727 T A GPR110 Missense_Mutation p.Q815L 0.27 deleterious(0.05) possibly_damaging(0.529) TCGA-CC-A7IH-01 6 49519475 49519475 T G C6orf141 3'UTR 0.25 TCGA-CC-A7IH-01 6 52009189 52009189 T A MIR206 RNA 0.18 TCGA-CC-A7IH-01 6 54804890 54804890 A T FAM83B Missense_Mutation p.Q374L 0.23 tolerated(0.15) benign(0.047) TCGA-CC-A7IH-01 6 54805800 54805800 T C FAM83B Silent p.P677P 0.22 TCGA-CC-A7IH-01 6 56328485 56328485 G A DST Nonsense_Mutation p.R4966* 0.18 TCGA-CC-A7IH-01 6 56497806 56497806 C A DST Missense_Mutation p.Q680H 0.20 probably_damaging(0.999) TCGA-CC-A7IH-01 6 56708034 56708034 G A RP11-472M19.2 5'Flank 0.27 TCGA-CC-A7IH-01 6 56917944 56917944 A G KIAA1586 Missense_Mutation p.H216R 0.23 deleterious(0.02) possibly_damaging(0.571) TCGA-CC-A7IH-01 6 57011970 57011970 T A ZNF451 Missense_Mutation p.Y363N 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-CC-A7IH-01 6 57011971 57011971 A T ZNF451 Missense_Mutation p.Y363F 0.17 tolerated(0.19) probably_damaging(0.995) TCGA-CC-A7IH-01 6 63990332 63990334 TCT - LGSN In_Frame_Del p.K374_D375delinsN 0.49 TCGA-CC-A7IH-01 6 64389990 64389990 A T PHF3 Missense_Mutation p.R112W 0.49 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IH-01 6 70411411 70411411 C - LMBRD1 Frame_Shift_Del p.G336Efs*2 0.29 TCGA-CC-A7IH-01 6 72892030 72892030 C G RIMS1 Missense_Mutation p.L286V 0.45 tolerated(0.55) benign(0.001) TCGA-CC-A7IH-01 6 7556029 7556029 G T DSP Missense_Mutation p.M83I 0.20 benign(0.366) TCGA-CC-A7IH-01 6 7581019 7581019 G T DSP Missense_Mutation p.E1532D 0.27 probably_damaging(0.978) TCGA-CC-A7IH-01 6 7581656 7581656 A G DSP Missense_Mutation p.K1745E 0.22 probably_damaging(0.986) TCGA-CC-A7IH-01 6 76744355 76744355 G T IMPG1 Missense_Mutation p.L151M 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-CC-A7IH-01 6 80746315 80746315 A G TTK Missense_Mutation p.Q683R 0.38 deleterious(0.01) benign(0.15) TCGA-CC-A7IH-01 6 8097609 8097609 A G EEF1E1 Missense_Mutation p.L60S 0.27 deleterious(0) probably_damaging(0.997) TCGA-CC-A7IH-01 6 83074944 83074944 T A TPBG Missense_Mutation p.L89Q 0.32 deleterious(0) probably_damaging(0.995) TCGA-CC-A7IH-01 6 84563092 84563092 T C RIPPLY2 5'UTR 0.30 TCGA-CC-A7IH-01 6 88757710 88757710 G A SPACA1 Silent p.G29G 0.46 TCGA-CC-A7IH-01 6 96659568 96659568 G A FUT9 3'UTR 0.45 TCGA-CC-A7IH-01 6 99991312 99991312 T A CCNC 3'UTR 0.36 TCGA-CC-A7IH-01 7 107114661 107114661 T A GPR22 Silent p.I52I 0.42 TCGA-CC-A7IH-01 7 107706917 107706917 T A LAMB4 Missense_Mutation p.S859C 0.41 deleterious(0.02) possibly_damaging(0.591) TCGA-CC-A7IH-01 7 107820770 107820770 C T NRCAM Silent p.P916P 0.58 TCGA-CC-A7IH-01 7 114268855 114268855 T A FOXP2 Intron 0.46 TCGA-CC-A7IH-01 7 117003770 117003770 A G ASZ1 Silent p.H436H 0.31 TCGA-CC-A7IH-01 7 117407202 117407202 C A CTTNBP2 Missense_Mutation p.G936V 0.41 tolerated(0.09) benign(0.342) TCGA-CC-A7IH-01 7 120781062 120781062 G T CPED1 Silent p.G627G 0.38 TCGA-CC-A7IH-01 7 121653036 121653036 T A PTPRZ1 Missense_Mutation p.F1312L 0.39 tolerated_low_confidence(0.23) benign(0.006) TCGA-CC-A7IH-01 7 127255616 127255616 A T PAX4 5'UTR 0.48 TCGA-CC-A7IH-01 7 128323061 128323061 A G FAM71F2 Missense_Mutation p.K260E 0.51 tolerated(0.1) benign(0.293) TCGA-CC-A7IH-01 7 128394434 128394434 A T CALU Intron 0.37 TCGA-CC-A7IH-01 7 128434789 128434789 G T CCDC136 Nonsense_Mutation p.E105* 0.37 TCGA-CC-A7IH-01 7 128450365 128450365 T G CCDC136 Missense_Mutation p.L658W 0.44 deleterious(0) probably_damaging(0.978) TCGA-CC-A7IH-01 7 128505618 128505618 G T ATP6V1F Nonsense_Mutation p.E144* 0.43 TCGA-CC-A7IH-01 7 128543812 128543812 A T AC025594.1 5'Flank 0.40 TCGA-CC-A7IH-01 7 131908376 131908376 T C PLXNA4 Silent p.P669P 0.58 TCGA-CC-A7IH-01 7 140048534 140048534 T C SLC37A3 Missense_Mutation p.N306D 0.49 deleterious(0) probably_damaging(0.995) TCGA-CC-A7IH-01 7 140285439 140285439 A G DENND2A Silent p.L399L 0.38 TCGA-CC-A7IH-01 7 141752594 141752594 C T MGAM Missense_Mutation p.S990F 0.36 deleterious(0.03) possibly_damaging(0.45) TCGA-CC-A7IH-01 7 141755835 141755835 C T MGAM Silent p.Y1173Y 0.35 TCGA-CC-A7IH-01 7 141764190 141764190 A G MGAM Missense_Mutation p.E1451G 0.43 tolerated(0.37) benign(0.051) TCGA-CC-A7IH-01 7 142563375 142563375 C T EPHB6 Silent p.A364A 0.32 TCGA-CC-A7IH-01 7 143044041 143044041 A T CLCN1 Missense_Mutation p.E801V 0.47 deleterious(0) possibly_damaging(0.739) TCGA-CC-A7IH-01 7 143657623 143657623 T A OR2F1 Missense_Mutation p.L187Q 0.36 deleterious(0) probably_damaging(0.992) TCGA-CC-A7IH-01 7 143701238 143701238 T A OR6B1 Missense_Mutation p.L50Q 0.39 tolerated(0.34) benign(0) TCGA-CC-A7IH-01 7 143792917 143792917 C A OR2A12 Silent p.T239T 0.32 TCGA-CC-A7IH-01 7 144072605 144072605 A T ARHGEF5 Splice_Site p.X1433_splice 0.22 TCGA-CC-A7IH-01 7 144096135 144096135 A G NOBOX Silent p.P459P 0.48 TCGA-CC-A7IH-01 7 148767562 148767562 T C ZNF786 Missense_Mutation p.K768E 0.44 tolerated(0.1) benign(0.105) TCGA-CC-A7IH-01 7 148787794 148787794 C A ZNF786 5'UTR 0.47 TCGA-CC-A7IH-01 7 150710314 150710314 T A NOS3 Intron 0.23 TCGA-CC-A7IH-01 7 150774867 150774867 C T FASTK Missense_Mutation p.G347D 0.43 deleterious(0.02) benign(0.021) TCGA-CC-A7IH-01 7 150839513 150839513 A T AGAP3 Missense_Mutation p.S689C 0.12 deleterious(0) probably_damaging(0.992) TCGA-CC-A7IH-01 7 1513873 1513873 C A INTS1 Silent p.P1920P 0.47 TCGA-CC-A7IH-01 7 18066634 18066634 T C PRPS1L1 Missense_Mutation p.I258V 0.07 tolerated(0.23) benign(0.005) TCGA-CC-A7IH-01 7 18705951 18705951 A G HDAC9 Missense_Mutation p.N528S 0.34 tolerated(0.72) benign(0.002) TCGA-CC-A7IH-01 7 23802521 23802521 T C STK31 Silent p.N465N 0.10 TCGA-CC-A7IH-01 7 27185230 27185230 C G HOXA6 3'UTR 0.46 TCGA-CC-A7IH-01 7 2968233 2968233 T A CARD11 Missense_Mutation p.S585C 0.31 tolerated(0.07) possibly_damaging(0.823) TCGA-CC-A7IH-01 7 34889443 34889443 A T NPSR1 Intron 0.55 TCGA-CC-A7IH-01 7 44096470 44096470 C A DBNL Missense_Mutation p.R148S 0.12 deleterious(0.02) benign(0.061) TCGA-CC-A7IH-01 7 47342734 47342734 T A TNS3 Missense_Mutation p.T1091S 0.10 tolerated(1) benign(0.002) TCGA-CC-A7IH-01 7 48634410 48634410 G A ABCA13 Splice_Site p.X4915_splice 0.40 TCGA-CC-A7IH-01 7 50467947 50467947 C T IKZF1 Silent p.C352C 0.49 TCGA-CC-A7IH-01 7 5112652 5112652 G T RBAK-RBAKDN 3'UTR 0.44 TCGA-CC-A7IH-01 7 57188114 57188114 C A ZNF479 Missense_Mutation p.W336C 0.37 tolerated(0.22) benign(0.002) TCGA-CC-A7IH-01 7 57188115 57188115 C A ZNF479 Missense_Mutation p.W336L 0.37 tolerated(0.69) benign(0.002) TCGA-CC-A7IH-01 7 5756357 5756357 T G RNF216 Missense_Mutation p.Q562P 0.06 deleterious(0) probably_damaging(0.966) TCGA-CC-A7IH-01 7 6550307 6550307 G T GRID2IP Missense_Mutation p.P529H 0.48 deleterious(0.04) possibly_damaging(0.701) TCGA-CC-A7IH-01 7 65541034 65541034 G T ASL 5'UTR 0.46 TCGA-CC-A7IH-01 7 76112438 76112438 A T DTX2 Silent p.P294P 0.39 TCGA-CC-A7IH-01 7 81714106 81714106 C A CACNA2D1 Missense_Mutation p.G213C 0.43 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 7 82467649 82467649 T C PCLO Missense_Mutation p.N4703D 0.34 unknown(0) TCGA-CC-A7IH-01 7 82580709 82580709 T A PCLO Silent p.T3065T 0.49 TCGA-CC-A7IH-01 7 82581285 82581285 G T PCLO Missense_Mutation p.S2995Y 0.50 unknown(0) TCGA-CC-A7IH-01 7 82764725 82764725 C A PCLO Missense_Mutation p.G714V 0.46 unknown(0) TCGA-CC-A7IH-01 7 86416372 86416372 A G GRM3 Missense_Mutation p.M422V 0.10 deleterious(0.03) possibly_damaging(0.578) TCGA-CC-A7IH-01 7 90044155 90044155 G A CLDN12 3'UTR 0.33 TCGA-CC-A7IH-01 7 90895564 90895564 A G FZD1 Missense_Mutation p.I457V 0.37 tolerated(1) benign(0.023) TCGA-CC-A7IH-01 7 92732405 92732405 C T SAMD9 Silent p.L1002L 0.39 TCGA-CC-A7IH-01 7 94040245 94040245 T C COL1A2 Silent p.A414A 0.38 TCGA-CC-A7IH-01 7 94540283 94540283 T C PPP1R9A Silent p.S286S 0.44 TCGA-CC-A7IH-01 8 10465648 10465648 T A RP1L1 Missense_Mutation p.Q1987L 0.55 unknown(0) TCGA-CC-A7IH-01 8 106813578 106813578 G A ZFPM2 Missense_Mutation p.S423N 0.45 tolerated(0.08) benign(0.125) TCGA-CC-A7IH-01 8 110100121 110100121 T G TRHR Missense_Mutation p.I127S 0.19 deleterious(0) probably_damaging(0.998) TCGA-CC-A7IH-01 8 110342128 110342128 G C NUDCD1 Intron 0.21 TCGA-CC-A7IH-01 8 110499010 110499010 A T PKHD1L1 Silent p.V3280V 0.46 TCGA-CC-A7IH-01 8 110509272 110509272 C G PKHD1L1 Missense_Mutation p.C3484W 0.21 deleterious(0) probably_damaging(0.995) TCGA-CC-A7IH-01 8 113326785 113326785 A T CSMD3 Nonsense_Mutation p.Y2474* 0.24 TCGA-CC-A7IH-01 8 113988150 113988150 C A CSMD3 Missense_Mutation p.A420S 0.46 tolerated(0.41) benign(0) TCGA-CC-A7IH-01 8 120428593 120428593 C T NOV 5'UTR 0.58 TCGA-CC-A7IH-01 8 120628551 120628551 A T ENPP2 Missense_Mutation p.L244Q 0.48 deleterious(0) probably_damaging(0.997) TCGA-CC-A7IH-01 8 124219942 124219942 T A FAM83A 3'UTR 0.38 TCGA-CC-A7IH-01 8 125103740 125103740 G A FER1L6 Missense_Mutation p.D1490N 0.48 tolerated(0.06) benign(0.008) TCGA-CC-A7IH-01 8 130778031 130778031 A G GSDMC Missense_Mutation p.L138S 0.25 deleterious(0.05) probably_damaging(0.991) TCGA-CC-A7IH-01 8 131955635 131955635 G A ADCY8 Missense_Mutation p.L439F 0.44 deleterious(0) probably_damaging(1) TCGA-CC-A7IH-01 8 133036643 133036643 A G OC90 3'UTR 0.46 TCGA-CC-A7IH-01 8 133141583 133141583 C A KCNQ3 Missense_Mutation p.G849C 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CC-A7IH-01 8 139705929 139705929 T G COL22A1 Missense_Mutation p.Q905P 0.23 probably_damaging(0.996) TCGA-CC-A7IH-01 8 142146872 142146872 C A DENND3 Missense_Mutation p.P43T 0.54 deleterious(0) probably_damaging(0.99) TCGA-CC-A7IH-01 8 142444651 142444651 T C PTP4A3 3'Flank 0.21 TCGA-CC-A7IH-01 8 143558633 143558633 T G BAI1 Missense_Mutation p.C406G 0.18 deleterious(0.01) possibly_damaging(0.537) TCGA-CC-A7IH-01 8 143694546 143694546 C A ARC Missense_Mutation p.A363S 0.44 tolerated_low_confidence(0.38) benign(0.002) TCGA-CC-A7IH-01 8 144351615 144351615 G T GLI4 Missense_Mutation p.V17F 0.45 deleterious(0.01) benign(0.037) TCGA-CC-A7IH-01 8 144681732 144681732 G A TIGD5 Silent p.L553L 0.41 TCGA-CC-A7IH-01 8 144776308 144776308 A G ZNF707 Missense_Mutation p.S242G 0.11 tolerated(0.1) benign(0.197) TCGA-CC-A7IH-01 8 145540683 145540684 - CC DGAT1 Splice_Site p.X416_splice 0.34 TCGA-CC-A7IH-01 8 146203004 146203004 T C ZNF252P RNA 0.42 TCGA-CC-A7IH-01 8 17933073 17933073 T A ASAH1 Silent p.S50S 0.81 TCGA-CC-A7IH-01 8 25319603 25319603 G T CDCA2 Missense_Mutation p.R89L 0.74 deleterious(0) probably_damaging(0.938) TCGA-CC-A7IH-01 8 28385435 28385435 G C FZD3 Silent p.G386G 0.71 TCGA-CC-A7IH-01 8 3889582 3889582 A T CSMD1 Missense_Mutation p.L152Q 0.82 possibly_damaging(0.776) TCGA-CC-A7IH-01 8 39468562 39468562 A T ADAM18 Intron 0.42 TCGA-CC-A7IH-01 8 41754027 41754027 T C ANK1 5'UTR 0.60 TCGA-CC-A7IH-01 8 41798813 41798813 T C KAT6A Silent p.P862P 0.69 TCGA-CC-A7IH-01 8 42171857 42171857 A G IKBKB Missense_Mutation p.Q237R 0.64 tolerated(0.31) benign(0.015) TCGA-CC-A7IH-01 8 48695065 48695065 T A PRKDC Missense_Mutation p.D3756V 0.23 probably_damaging(1) TCGA-CC-A7IH-01 8 52320842 52320842 G C PXDNL Silent p.P1114P 0.38 TCGA-CC-A7IH-01 8 52321428 52321428 A T PXDNL Missense_Mutation p.L919H 0.32 deleterious(0) probably_damaging(0.991) TCGA-CC-A7IH-01 8 53451056 53451056 A G FAM150A Missense_Mutation p.C113R 0.23 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IH-01 8 54764467 54764467 A T RGS20 Missense_Mutation p.Q3L 0.27 tolerated_low_confidence(0.06) benign(0.011) TCGA-CC-A7IH-01 8 55533893 55533893 C T RP1 Missense_Mutation p.R123C 0.65 deleterious(0.03) probably_damaging(0.915) TCGA-CC-A7IH-01 8 57354153 57354153 A T PENK Missense_Mutation p.L161Q 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-CC-A7IH-01 8 62415778 62415778 T A ASPH 3'UTR 0.35 TCGA-CC-A7IH-01 8 6612657 6612657 G A AGPAT5 Missense_Mutation p.M277I 0.07 tolerated(0.06) benign(0.003) TCGA-CC-A7IH-01 8 67930067 67930067 C A PPP1R42 Splice_Site 0.60 TCGA-CC-A7IH-01 8 67976717 67976717 A T CSPP1 Silent p.R28R 0.60 TCGA-CC-A7IH-01 8 68395739 68395739 G C CPA6 Intron 0.75 TCGA-CC-A7IH-01 8 68965436 68965436 C A PREX2 Missense_Mutation p.H350N 0.67 tolerated(0.05) benign(0.02) TCGA-CC-A7IH-01 8 72938310 72938310 T A TRPA1 Splice_Site p.X980_splice 0.53 TCGA-CC-A7IH-01 8 80553736 80553736 C T STMN2 Missense_Mutation p.S80F 0.06 deleterious(0) probably_damaging(0.97) TCGA-CC-A7IH-01 9 103348527 103348527 A G MURC Missense_Mutation p.I297V 0.41 tolerated(0.96) benign(0.002) TCGA-CC-A7IH-01 9 107599794 107599794 A G ABCA1 Missense_Mutation p.I370T 0.38 deleterious(0.01) benign(0.045) TCGA-CC-A7IH-01 9 113168473 113168473 T A SVEP1 Missense_Mutation p.E3136V 0.41 possibly_damaging(0.875) TCGA-CC-A7IH-01 9 113341549 113341549 G A SVEP1 Missense_Mutation p.S92F 0.38 probably_damaging(1) TCGA-CC-A7IH-01 9 114289679 114289679 C A ZNF483 Missense_Mutation p.Q2K 0.07 deleterious_low_confidence(0.04) benign(0.042) TCGA-CC-A7IH-01 9 124922050 124922050 C A NDUFA8 5'UTR 0.36 TCGA-CC-A7IH-01 9 126133122 126133122 A T CRB2 Missense_Mutation p.E597V 0.23 tolerated(0.09) benign(0.403) TCGA-CC-A7IH-01 9 127549471 127549471 A G OLFML2A Missense_Mutation p.E103G 0.47 deleterious(0) probably_damaging(0.986) TCGA-CC-A7IH-01 9 129455877 129455877 A T LMX1B Silent p.A272A 0.41 TCGA-CC-A7IH-01 9 130279260 130279260 G T FAM129B Silent p.A283A 0.36 TCGA-CC-A7IH-01 9 130551623 130551623 A T CDK9 Missense_Mutation p.D307V 0.46 deleterious(0) probably_damaging(0.92) TCGA-CC-A7IH-01 9 132375462 132375471 GAACAGAAGG - C9orf50 Frame_Shift_Del p.P368Hfs*39 0.33 TCGA-CC-A7IH-01 9 132481558 132481558 A C PRRX2 Missense_Mutation p.K103T 0.05 deleterious(0) probably_damaging(0.987) TCGA-CC-A7IH-01 9 134526250 134526250 T C RAPGEF1 Missense_Mutation p.K51E 0.41 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-CC-A7IH-01 9 135114574 135114574 A G NTNG2 Missense_Mutation p.T380A 0.06 deleterious(0.05) probably_damaging(0.926) TCGA-CC-A7IH-01 9 136029632 136029632 G C GBGT1 Missense_Mutation p.Q126E 0.33 tolerated(0.38) benign(0.004) TCGA-CC-A7IH-01 9 136084591 136084591 A T OBP2B 5'UTR 0.26 TCGA-CC-A7IH-01 9 136324153 136324153 T C ADAMTS13 Missense_Mutation p.W1379R 0.45 deleterious(0) probably_damaging(0.994) TCGA-CC-A7IH-01 9 138589403 138589403 T A SOHLH1 Missense_Mutation p.Q139L 0.43 deleterious(0) possibly_damaging(0.607) TCGA-CC-A7IH-01 9 139089345 139089345 T G LHX3 Silent p.P345P 0.50 TCGA-CC-A7IH-01 9 139108548 139108548 T A QSOX2 Silent p.P369P 0.42 TCGA-CC-A7IH-01 9 139231978 139231978 A G GPSM1 Missense_Mutation p.Y220C 0.45 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IH-01 9 140099273 140099273 T A TMEM203 3'UTR 0.33 TCGA-CC-A7IH-01 9 140773571 140773571 A T CACNA1B Missense_Mutation p.H117L 0.25 deleterious(0.01) benign(0.03) TCGA-CC-A7IH-01 9 14859459 14859459 A C FREM1 Missense_Mutation p.I118R 0.40 deleterious(0.01) benign(0.084) TCGA-CC-A7IH-01 9 17167219 17167219 A G CNTLN Intron 0.24 TCGA-CC-A7IH-01 9 21008034 21008034 A G PTPLAD2 Missense_Mutation p.M201T 0.44 deleterious(0.02) benign(0.049) TCGA-CC-A7IH-01 9 27203079 27203079 C A TEK Missense_Mutation p.A724D 0.42 tolerated(0.62) benign(0.099) TCGA-CC-A7IH-01 9 32632432 32632432 C G TAF1L Missense_Mutation p.R1049P 0.36 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IH-01 9 33469275 33469275 C G NOL6 Silent p.P264P 0.47 TCGA-CC-A7IH-01 9 34263160 34263160 C A KIF24 Missense_Mutation p.C485F 0.37 deleterious(0.01) possibly_damaging(0.68) TCGA-CC-A7IH-01 9 37861138 37861138 G T DCAF10 Missense_Mutation p.C438F 0.22 deleterious(0.02) benign(0.024) TCGA-CC-A7IH-01 9 40716298 40716298 C T FAM74A3 RNA 0.20 TCGA-CC-A7IH-01 9 70917878 70917878 C T FOXD4L3 Missense_Mutation p.P4L 0.13 deleterious_low_confidence(0.03) benign(0.012) TCGA-CC-A7IH-01 9 71555562 71555562 C A PIP5K1B Missense_Mutation p.A453D 0.43 tolerated(0.33) benign(0.002) TCGA-CC-A7IH-01 9 71869448 71869448 G A AL358113.1 Silent p.H65H 0.50 TCGA-CC-A7IH-01 9 75404071 75404071 A T TMC1 Silent p.V354V 0.06 TCGA-CC-A7IH-01 9 79318669 79318669 C T PRUNE2 Silent p.T2620T 0.40 TCGA-CC-A7IH-01 9 79325463 79325463 C A PRUNE2 Missense_Mutation p.S576I 0.37 deleterious(0) probably_damaging(0.945) TCGA-CC-A7IH-01 9 79635447 79635447 T A FOXB2 Missense_Mutation p.S293T 0.50 deleterious_low_confidence(0.04) probably_damaging(0.952) TCGA-CC-A7IH-01 9 84533247 84533247 A G SPATA31D5P RNA 0.45 TCGA-CC-A7IH-01 9 88961390 88961390 T C ZCCHC6 Missense_Mutation p.K176E 0.31 deleterious(0.03) benign(0.104) TCGA-CC-A7IH-01 9 92221027 92221027 G T GADD45G 3'UTR 0.39 TCGA-CC-A7IH-01 9 93650165 93650165 A G SYK Silent p.P572P 0.40 TCGA-CC-A7IH-01 9 94486208 94486208 G T ROR2 Silent p.V856V 0.43 TCGA-CC-A7IH-01 9 95477644 95477644 T A BICD2 Missense_Mutation p.Q787L 0.42 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IH-01 X 105011716 105011716 A T IL1RAPL2 3'UTR 0.41 TCGA-CC-A7IH-01 X 107464587 107464587 A G COL4A6 Silent p.I55I 0.46 TCGA-CC-A7IH-01 X 119206700 119206700 A T RHOXF2B Silent p.A216A 0.47 TCGA-CC-A7IH-01 X 122318291 122318291 G T GRIA3 5'UTR 0.41 TCGA-CC-A7IH-01 X 125298937 125298937 C A DCAF12L2 Missense_Mutation p.G324V 0.46 deleterious(0) probably_damaging(0.988) TCGA-CC-A7IH-01 X 127186327 127186327 T A ACTRT1 5'UTR 0.05 TCGA-CC-A7IH-01 X 132458433 132458433 C A GPC4 Missense_Mutation p.V151L 0.46 tolerated(0.68) benign(0.141) TCGA-CC-A7IH-01 X 133547942 133547942 A G PHF6 Silent p.R225R 0.49 TCGA-CC-A7IH-01 X 135488040 135488040 A T GPR112 Missense_Mutation p.L2948F 0.16 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IH-01 X 138701843 138701843 A T MCF2 Missense_Mutation p.L297Q 0.44 deleterious(0) possibly_damaging(0.655) TCGA-CC-A7IH-01 X 140969387 140969387 C T MAGEC3 Silent p.G238G 0.42 TCGA-CC-A7IH-01 X 147743516 147743516 A G AFF2 Missense_Mutation p.N90D 0.45 deleterious(0.01) probably_damaging(0.987) TCGA-CC-A7IH-01 X 151122941 151122941 T A GABRE 3'UTR 0.40 TCGA-CC-A7IH-01 X 152228573 152228573 C T PNMA3 3'UTR 0.18 TCGA-CC-A7IH-01 X 153607910 153607910 G T EMD Silent p.P22P 0.45 TCGA-CC-A7IH-01 X 153633398 153633398 C T DNASE1L1 Silent p.V54V 0.52 TCGA-CC-A7IH-01 X 153880820 153880820 G T CTAG2 Missense_Mutation p.P119T 0.49 deleterious_low_confidence(0.03) probably_damaging(0.975) TCGA-CC-A7IH-01 X 154444801 154444801 C G VBP1 Silent p.A14A 0.54 TCGA-CC-A7IH-01 X 155011079 155011079 T A SPRY3 3'UTR 0.29 TCGA-CC-A7IH-01 X 2139046 2139046 T C DHRSX 3'UTR 0.42 TCGA-CC-A7IH-01 X 23397834 23397834 C T PTCHD1 Silent p.L160L 0.84 TCGA-CC-A7IH-01 X 31089830 31089830 T A FTHL17 Missense_Mutation p.I81F 0.85 deleterious(0.02) benign(0.091) TCGA-CC-A7IH-01 X 34149063 34149063 A T FAM47A Missense_Mutation p.C445S 0.89 deleterious(0.04) probably_damaging(0.943) TCGA-CC-A7IH-01 X 49143177 49143177 A G PPP1R3F Missense_Mutation p.I675M 0.87 tolerated_low_confidence(1) benign(0.001) TCGA-CC-A7IH-01 X 50125538 50125538 A G DGKK RNA 0.90 TCGA-CC-A7IH-01 X 55033578 55033578 A T APEX2 Missense_Mutation p.T423S 0.72 tolerated(0.21) benign(0.006) TCGA-CC-A7IH-01 X 6069058 6069058 G T NLGN4X Missense_Mutation p.N150K 0.83 deleterious(0) probably_damaging(0.994) TCGA-CC-A7IH-01 X 68725120 68725120 T C FAM155B 5'UTR 0.41 TCGA-CC-A7IH-01 X 69282892 69282892 G T OTUD6A Missense_Mutation p.R173L 0.47 tolerated(0.07) possibly_damaging(0.708) TCGA-CC-A7IH-01 X 69572476 69572476 A G KIF4A Silent p.A486A 0.50 TCGA-CC-A7IH-01 X 69772028 69772028 A T TEX11 Missense_Mutation p.L838Q 0.46 deleterious(0.05) possibly_damaging(0.878) TCGA-CC-A7IH-01 X 71694493 71694493 T C HDAC8 Intron 0.50 TCGA-CC-A7IH-01 X 75004449 75004449 A G MAGEE2 Silent p.V146V 0.47 TCGA-CC-A7IH-01 X 78216943 78216943 C A P2RY10 Missense_Mutation p.A309D 0.45 deleterious(0) benign(0.266) TCGA-CC-A7IH-01 X 82764127 82764127 C A POU3F4 Missense_Mutation p.S265R 0.41 deleterious(0) possibly_damaging(0.847) TCGA-CC-A7IH-01 X 84534310 84534310 G T POF1B 3'UTR 0.53 TCGA-CC-A7IH-01 X 85906101 85906101 A T DACH2 Missense_Mutation p.N235Y 0.48 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IH-01 X 91131828 91131828 A T PCDH11X Nonsense_Mutation p.K197* 0.45 TCGA-CC-A7IH-01 X 91873264 91873264 T A PCDH11X Silent p.A1123A 0.47 TCGA-CC-A7IH-01 X 96140268 96140268 G - RPA4 3'UTR 0.36 TCGA-CC-A7IH-01 X 9863366 9863366 G A SHROOM2 Missense_Mutation p.G473D 0.05 tolerated(0.22) benign(0.032) TCGA-CC-A7II-01 10 105350084 105350084 C A NEURL1 Nonsense_Mutation p.C560* 0.28 TCGA-CC-A7II-01 10 108431023 108431023 A G SORCS1 Missense_Mutation p.C721R 0.32 deleterious(0) probably_damaging(0.997) TCGA-CC-A7II-01 10 126715003 126715003 G A CTBP2 Silent p.P442P 0.43 TCGA-CC-A7II-01 10 21414907 21414907 C T C10orf113 Missense_Mutation p.A105T 0.33 deleterious(0) possibly_damaging(0.682) TCGA-CC-A7II-01 10 49450281 49450281 C T FRMPD2 Missense_Mutation p.E164K 0.35 deleterious(0.03) possibly_damaging(0.507) TCGA-CC-A7II-01 10 5803296 5803296 T C FAM208B Missense_Mutation p.F2346L 0.36 tolerated(0.28) benign(0.031) TCGA-CC-A7II-01 10 70405127 70405127 A G TET1 Missense_Mutation p.M881V 0.38 tolerated(0.17) benign(0.006) TCGA-CC-A7II-01 10 73767615 73767615 C A CHST3 Missense_Mutation p.R276S 0.38 deleterious(0) probably_damaging(0.986) TCGA-CC-A7II-01 10 7679202 7679202 C A ITIH5 Missense_Mutation p.G214V 0.42 tolerated(0.18) benign(0.044) TCGA-CC-A7II-01 10 89126079 89126079 C T NUTM2D Intron 0.21 TCGA-CC-A7II-01 10 91196032 91196032 C A SLC16A12 Missense_Mutation p.G358V 0.46 tolerated(0.11) possibly_damaging(0.864) TCGA-CC-A7II-01 11 102702828 102702828 G C MMP3 3'Flank 0.30 TCGA-CC-A7II-01 11 113660211 113660211 G A ATF4P4 RNA 0.18 TCGA-CC-A7II-01 11 120996428 120996428 G A TECTA Missense_Mutation p.V541M 0.14 deleterious(0.02) benign(0.183) TCGA-CC-A7II-01 11 123811018 123811018 G T OR4D5 Missense_Mutation p.G232V 0.25 deleterious(0) possibly_damaging(0.475) TCGA-CC-A7II-01 11 18743087 18743087 G A IGSF22 Silent p.L125L 0.30 TCGA-CC-A7II-01 11 30255242 30255242 A T FSHB Silent p.P95P 0.21 TCGA-CC-A7II-01 11 47201773 47201773 C A PACSIN3 Missense_Mutation p.Q189H 0.40 tolerated(0.14) benign(0.1) TCGA-CC-A7II-01 11 4945191 4945191 C A OR51G1 Missense_Mutation p.A127S 0.25 deleterious(0) probably_damaging(0.999) TCGA-CC-A7II-01 11 58384203 58384203 A G ZFP91 Missense_Mutation p.I373V 0.21 deleterious(0.05) possibly_damaging(0.895) TCGA-CC-A7II-01 11 58980026 58980026 C T MPEG1 Missense_Mutation p.A105T 0.08 tolerated(0.43) benign(0) TCGA-CC-A7II-01 11 65394885 65394885 G A PCNXL3 Silent p.A1178A 0.21 TCGA-CC-A7II-01 11 86108768 86108768 A G CCDC81 Silent p.K247K 0.51 TCGA-CC-A7II-01 11 86520051 86520051 C A PRSS23 3'UTR 0.53 TCGA-CC-A7II-01 12 104077060 104077060 C A STAB2 Silent p.T961T 0.30 TCGA-CC-A7II-01 12 109192797 109192797 T C SSH1 Missense_Mutation p.Y443C 0.29 deleterious(0) probably_damaging(1) TCGA-CC-A7II-01 12 113599698 113599698 A G DDX54 Missense_Mutation p.L767P 0.09 tolerated(0.16) benign(0.029) TCGA-CC-A7II-01 12 113770749 113770749 C T SLC8B1 5'UTR 0.17 TCGA-CC-A7II-01 12 121435545 121435561 CTGGCAGGCATTGCAGT - HNF1A Intron 0.26 TCGA-CC-A7II-01 12 132445446 132445446 G T EP400 Silent p.L94L 0.50 TCGA-CC-A7II-01 12 40714888 40714889 - T LRRK2 Frame_Shift_Ins p.I1691Yfs*6 0.32 TCGA-CC-A7II-01 12 41463865 41463865 C A CNTN1 3'UTR 0.39 TCGA-CC-A7II-01 12 41966302 41966302 C A PDZRN4 Missense_Mutation p.A574D 0.51 tolerated(0.06) possibly_damaging(0.572) TCGA-CC-A7II-01 12 49463725 49463725 C G RHEBL1 5'UTR 0.56 TCGA-CC-A7II-01 12 53170525 53170525 C A KRT76 Missense_Mutation p.R184L 0.31 deleterious(0) probably_damaging(0.963) TCGA-CC-A7II-01 12 53207647 53207647 C T KRT4 Missense_Mutation p.A66T 0.55 deleterious(0.04) possibly_damaging(0.781) TCGA-CC-A7II-01 12 58002913 58002913 C T DTX3 Missense_Mutation p.A341V 0.45 tolerated(0.26) benign(0.031) TCGA-CC-A7II-01 12 68726034 68726034 G T MDM1 5'UTR 0.48 TCGA-CC-A7II-01 12 79689884 79689884 C T SYT1 Silent p.P170P 0.38 TCGA-CC-A7II-01 12 80887176 80887176 C A PTPRQ Missense_Mutation p.S490R 0.28 tolerated(0.11) benign(0.123) TCGA-CC-A7II-01 12 91558395 91558395 A G DCN Missense_Mutation p.L104P 0.18 deleterious(0) probably_damaging(0.996) TCGA-CC-A7II-01 13 25416232 25416232 C T RNF17 Missense_Mutation p.P846S 0.32 tolerated(0.64) benign(0.054) TCGA-CC-A7II-01 14 105413999 105413999 C A AHNAK2 Missense_Mutation p.G2597C 0.41 probably_damaging(0.997) TCGA-CC-A7II-01 14 30100159 30100159 G A PRKD1 Silent p.A487A 0.32 TCGA-CC-A7II-01 14 64727461 64727461 G T ESR2 Silent p.R220R 0.16 TCGA-CC-A7II-01 14 64954580 64954580 C A ZBTB25 Silent p.V123V 0.46 TCGA-CC-A7II-01 14 94423371 94423371 T A ASB2 Intron 0.27 TCGA-CC-A7II-01 14 95078741 95078741 G A SERPINA3 5'UTR 0.33 TCGA-CC-A7II-01 14 96864716 96864716 G T AK7 Intron 0.27 TCGA-CC-A7II-01 15 20740171 20740171 G T GOLGA6L6 Silent p.R527R 0.38 TCGA-CC-A7II-01 15 27128577 27128577 C A GABRA5 Missense_Mutation p.L124I 0.44 deleterious(0) probably_damaging(0.999) TCGA-CC-A7II-01 15 45437120 45437120 C T DUOX1 Missense_Mutation p.R722W 0.44 deleterious(0) possibly_damaging(0.549) TCGA-CC-A7II-01 15 63335126 63335126 A G TPM1 Missense_Mutation p.E33G 0.19 deleterious(0) probably_damaging(0.998) TCGA-CC-A7II-01 15 65208032 65208032 G A ANKDD1A Missense_Mutation p.R24H 0.29 tolerated(0.09) benign(0.081) TCGA-CC-A7II-01 15 74235272 74235272 C T LOXL1 Missense_Mutation p.R394C 0.33 deleterious(0) probably_damaging(0.996) TCGA-CC-A7II-01 15 74467261 74467261 A G ISLR Missense_Mutation p.E21G 0.25 deleterious(0.02) benign(0.115) TCGA-CC-A7II-01 15 74836781 74836781 C T ARID3B Silent p.V168V 0.36 TCGA-CC-A7II-01 15 85681082 85681082 G T PDE8A Missense_Mutation p.W813L 0.35 deleterious(0) probably_damaging(1) TCGA-CC-A7II-01 15 87097615 87097615 G A AGBL1 Silent p.K901K 0.41 TCGA-CC-A7II-01 15 91496950 91496950 G T UNC45A 3'UTR 0.24 TCGA-CC-A7II-01 15 96876489 96876489 G C NR2F2 Intron 0.36 TCGA-CC-A7II-01 16 1129560 1129560 C A SSTR5 Missense_Mutation p.A231E 0.72 tolerated(0.07) possibly_damaging(0.574) TCGA-CC-A7II-01 16 24955152 24955152 C T ARHGAP17 Missense_Mutation p.V425I 0.26 tolerated(0.3) benign(0.159) TCGA-CC-A7II-01 16 27840186 27840186 G A GSG1L Missense_Mutation p.R252C 0.30 tolerated(0.05) probably_damaging(0.998) TCGA-CC-A7II-01 16 31405619 31405619 G T ITGAD Missense_Mutation p.A32S 0.13 tolerated(0.4) benign(0.231) TCGA-CC-A7II-01 16 4559455 4559455 G T HMOX2 Nonsense_Mutation p.E247* 0.06 TCGA-CC-A7II-01 16 48119516 48119516 G T ABCC12 Silent p.L1272L 0.30 TCGA-CC-A7II-01 16 5121883 5121883 G A ALG1 Silent p.L11L 0.81 TCGA-CC-A7II-01 16 76592443 76592443 A G CNTNAP4 Missense_Mutation p.I1191V 0.29 tolerated(0.14) benign(0.02) TCGA-CC-A7II-01 16 77355100 77355100 C T ADAMTS18 Splice_Site p.X722_splice 0.31 TCGA-CC-A7II-01 16 77401346 77401346 C T ADAMTS18 Missense_Mutation p.R257H 0.42 deleterious(0.01) possibly_damaging(0.534) TCGA-CC-A7II-01 16 84227886 84227886 C A ADAD2 Intron 0.52 TCGA-CC-A7II-01 17 10534941 10534941 T C MYH3 Missense_Mutation p.K1758R 0.52 deleterious(0.02) probably_damaging(0.989) TCGA-CC-A7II-01 17 12044509 12044509 G A MAP2K4 Missense_Mutation p.A378T 0.11 deleterious(0.02) possibly_damaging(0.872) TCGA-CC-A7II-01 17 39471910 39471910 G T KRTAP17-1 5'UTR 0.41 TCGA-CC-A7II-01 17 43196348 43196348 C A PLCD3 Silent p.R249R 0.43 TCGA-CC-A7II-01 17 45820045 45820045 G A TBX21 Silent p.V187V 0.09 TCGA-CC-A7II-01 17 4999050 4999050 C A ZFP3 3'UTR 0.67 TCGA-CC-A7II-01 17 54559743 54559743 G A ANKFN1 Silent p.Q709Q 0.36 TCGA-CC-A7II-01 17 59560529 59560529 C A TBX4 Missense_Mutation p.S430R 0.35 deleterious(0) possibly_damaging(0.856) TCGA-CC-A7II-01 17 74014602 74014602 C A EVPL Missense_Mutation p.G455V 0.30 deleterious(0) possibly_damaging(0.851) TCGA-CC-A7II-01 17 7577534 7577534 C A TP53 Missense_Mutation p.R249S 0.44 deleterious(0) probably_damaging(0.994) TCGA-CC-A7II-01 17 7721980 7721980 T C DNAH2 Missense_Mutation p.L3519P 0.52 probably_damaging(1) TCGA-CC-A7II-01 17 78237406 78237406 A G RNF213 5'UTR 0.31 TCGA-CC-A7II-01 17 80019565 80019565 C T DUS1L Missense_Mutation p.G209E 0.36 deleterious(0) probably_damaging(1) TCGA-CC-A7II-01 18 59217241 59217241 C A CDH20 Missense_Mutation p.S560Y 0.41 tolerated(0.06) possibly_damaging(0.857) TCGA-CC-A7II-01 18 67992706 67992706 C T SOCS6 Nonsense_Mutation p.Q268* 0.57 TCGA-CC-A7II-01 19 10514176 10514176 C A CDC37 5'UTR 0.15 TCGA-CC-A7II-01 19 17657556 17657556 G T FAM129C Missense_Mutation p.G570V 0.26 deleterious(0) possibly_damaging(0.905) TCGA-CC-A7II-01 19 33096767 33096767 G A ANKRD27 Missense_Mutation p.H823Y 0.64 tolerated(1) benign(0.415) TCGA-CC-A7II-01 19 36222992 36222992 G T KMT2B Missense_Mutation p.R1874L 0.21 probably_damaging(0.931) TCGA-CC-A7II-01 19 37383281 37383281 T - ZNF829 Frame_Shift_Del p.I219Ffs*13 0.14 TCGA-CC-A7II-01 19 37676675 37676675 G A ZNF585B Silent p.I588I 0.22 TCGA-CC-A7II-01 19 39105049 39105049 A G MAP4K1 Missense_Mutation p.V117A 0.10 deleterious(0) benign(0.433) TCGA-CC-A7II-01 19 41822393 41822393 C T CCDC97 Silent p.L51L 0.70 TCGA-CC-A7II-01 19 42492257 42492257 G T ATP1A3 Missense_Mutation p.A76D 0.78 tolerated(0.43) benign(0.061) TCGA-CC-A7II-01 19 43349214 43349214 G T PSG10P RNA 0.16 TCGA-CC-A7II-01 19 45559788 45559788 A G CLASRP Missense_Mutation p.K154E 0.04 tolerated(0.08) possibly_damaging(0.781) TCGA-CC-A7II-01 19 45668132 45668132 G A TRAPPC6A Silent p.D97D 0.03 TCGA-CC-A7II-01 19 46825090 46825090 C A HIF3A Missense_Mutation p.A401D 0.58 tolerated(0.27) benign(0.044) TCGA-CC-A7II-01 19 47424838 47424838 A T ARHGAP35 Missense_Mutation p.N969I 0.53 tolerated(0.14) benign(0.147) TCGA-CC-A7II-01 19 49104612 49104612 C A FAM83E Missense_Mutation p.W397C 0.21 deleterious(0) possibly_damaging(0.867) TCGA-CC-A7II-01 19 49104613 49104613 C A FAM83E Missense_Mutation p.W397L 0.21 deleterious(0) possibly_damaging(0.448) TCGA-CC-A7II-01 19 50200664 50200664 C A CPT1C Missense_Mutation p.L75I 0.17 tolerated(0.31) benign(0.342) TCGA-CC-A7II-01 19 53302898 53302898 G C ZNF28 3'UTR 0.08 TCGA-CC-A7II-01 19 53302982 53302982 G C ZNF28 Missense_Mutation p.L706V 0.57 deleterious(0) possibly_damaging(0.869) TCGA-CC-A7II-01 19 53740851 53740851 A G ZNF677 Missense_Mutation p.C377R 0.20 deleterious(0) probably_damaging(1) TCGA-CC-A7II-01 19 56539232 56539232 G T NLRP5 Missense_Mutation p.V545L 0.53 deleterious(0.02) benign(0.183) TCGA-CC-A7II-01 19 57133835 57133835 C A ZNF71 Missense_Mutation p.R394S 0.50 tolerated(0.67) probably_damaging(0.982) TCGA-CC-A7II-01 19 8619381 8619395 CTCACAGTCGATAAG - MYO1F In_Frame_Del p.L98_E102del 0.36 TCGA-CC-A7II-01 19 9929493 9929493 C A FBXL12 5'UTR 0.44 TCGA-CC-A7II-01 1 109810616 109810616 G T CELSR2 Silent p.L2084L 0.27 TCGA-CC-A7II-01 1 109883462 109883462 C A SORT1 Missense_Mutation p.G383V 0.32 deleterious(0) probably_damaging(0.999) TCGA-CC-A7II-01 1 13716967 13716967 G T PRAMEF17 Missense_Mutation p.D152Y 0.46 deleterious(0) probably_damaging(0.939) TCGA-CC-A7II-01 1 150238607 150238607 A G APH1A Intron 0.45 TCGA-CC-A7II-01 1 152280060 152280060 G T FLG Missense_Mutation p.S2434R 0.30 probably_damaging(0.93) TCGA-CC-A7II-01 1 160313152 160313152 G T NCSTN 5'UTR 0.47 TCGA-CC-A7II-01 1 160616916 160616916 G A SLAMF1 5'UTR 0.51 TCGA-CC-A7II-01 1 201021743 201021743 G T CACNA1S Missense_Mutation p.Q1299K 0.33 deleterious(0.01) possibly_damaging(0.507) TCGA-CC-A7II-01 1 212965299 212965315 CTGCCACCTCTCCGCCC - TATDN3 Frame_Shift_Del p.C13Gfs*3 0.27 TCGA-CC-A7II-01 1 22304871 22304871 A G CELA3B Missense_Mutation p.Y18C 0.39 tolerated(1) benign(0) TCGA-CC-A7II-01 1 223285710 223285710 G A TLR5 Missense_Mutation p.P222S 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-CC-A7II-01 1 228503597 228503597 C A OBSCN Silent p.G5311G 0.28 TCGA-CC-A7II-01 1 228525079 228525079 G A OBSCN Missense_Mutation p.G6556S 0.34 probably_damaging(1) TCGA-CC-A7II-01 1 228560614 228560614 G T OBSCN Missense_Mutation p.A8336S 0.33 benign(0.163) TCGA-CC-A7II-01 1 237947437 237947437 C T RYR2 Missense_Mutation p.A4142V 0.41 possibly_damaging(0.87) TCGA-CC-A7II-01 1 27939760 27939760 G T FGR Missense_Mutation p.L451I 0.50 tolerated(0.84) benign(0.079) TCGA-CC-A7II-01 1 36025987 36025987 G T NCDN Missense_Mutation p.A79S 0.32 deleterious(0) probably_damaging(0.999) TCGA-CC-A7II-01 1 46782226 46782226 G T UQCRH Silent p.V82V 0.52 TCGA-CC-A7II-01 1 6162071 6162071 C A CHD5 3'UTR 0.50 TCGA-CC-A7II-01 20 3218357 3218357 C G SLC4A11 Intron 0.18 TCGA-CC-A7II-01 20 33329288 33329288 G A NCOA6 Missense_Mutation p.P1591L 0.43 possibly_damaging(0.874) TCGA-CC-A7II-01 20 34025505 34025505 C G GDF5 Silent p.G68G 0.41 TCGA-CC-A7II-01 20 57768554 57768554 T C ZNF831 Missense_Mutation p.V827A 0.44 deleterious(0) probably_damaging(0.991) TCGA-CC-A7II-01 20 62168670 62168670 C A PTK6 5'UTR 0.38 TCGA-CC-A7II-01 20 62168674 62168674 C G PTK6 5'UTR 0.37 TCGA-CC-A7II-01 21 33829933 33829933 G A EVA1C Missense_Mutation p.R129Q 0.17 tolerated(0.05) probably_damaging(0.992) TCGA-CC-A7II-01 21 38884915 38884915 T G DYRK1A 3'Flank 0.23 TCGA-CC-A7II-01 21 42064797 42064797 G A DSCAM Silent p.S149S 0.29 TCGA-CC-A7II-01 21 45820191 45820191 T A TRPM2 Missense_Mutation p.L753Q 0.32 deleterious(0.01) possibly_damaging(0.757) TCGA-CC-A7II-01 21 46067277 46067277 T A KRTAP10-11 3'UTR 0.32 TCGA-CC-A7II-01 22 18305777 18305777 G A MICAL3 Silent p.A1081A 0.16 TCGA-CC-A7II-01 22 20749677 20749677 C G ZNF74 Missense_Mutation p.S30W 0.44 tolerated(0.21) possibly_damaging(0.482) TCGA-CC-A7II-01 22 26298603 26298603 C A MYO18B Missense_Mutation p.A1616D 0.27 deleterious(0) probably_damaging(0.998) TCGA-CC-A7II-01 22 42608089 42608089 G C TCF20 Missense_Mutation p.P1075A 0.47 probably_damaging(0.998) TCGA-CC-A7II-01 22 42983538 42983538 A - POLDIP3 Frame_Shift_Del p.I355Sfs*11 0.24 TCGA-CC-A7II-01 22 44681337 44681337 C A KIAA1644 Silent p.P190P 0.27 TCGA-CC-A7II-01 22 45279146 45279146 C A PHF21B Missense_Mutation p.Q472H 0.25 deleterious(0.02) possibly_damaging(0.794) TCGA-CC-A7II-01 22 50312939 50312939 C T CRELD2 Missense_Mutation p.T64M 0.06 deleterious(0.01) probably_damaging(0.988) TCGA-CC-A7II-01 2 111556210 111556210 T C ACOXL Silent p.C123C 0.36 TCGA-CC-A7II-01 2 128495606 128495606 A C WDR33 Intron 0.54 TCGA-CC-A7II-01 2 14774404 14774404 G T FAM84A Missense_Mutation p.G101C 0.46 tolerated(0.06) possibly_damaging(0.85) TCGA-CC-A7II-01 2 148684674 148684674 T C ACVR2A Missense_Mutation p.I458T 0.23 deleterious(0.03) possibly_damaging(0.883) TCGA-CC-A7II-01 2 176944851 176944851 G T EVX2 Missense_Mutation p.A472D 0.29 deleterious(0) benign(0.045) TCGA-CC-A7II-01 2 179517415 179517415 G T TTN Missense_Mutation p.A13003D 0.37 TCGA-CC-A7II-01 2 179701999 179701999 C A CCDC141 Missense_Mutation p.S1316I 0.35 tolerated(0.08) possibly_damaging(0.481) TCGA-CC-A7II-01 2 187455211 187455222 TCGGCTTCGCCG - ITGAV In_Frame_Del p.F49_V53delinsL 0.30 TCGA-CC-A7II-01 2 189850437 189850437 G C COL3A1 Missense_Mutation p.G127A 0.38 unknown(0) TCGA-CC-A7II-01 2 224462635 224462635 G T SCG2 Missense_Mutation p.P456T 0.41 deleterious(0.03) benign(0.165) TCGA-CC-A7II-01 2 225669789 225669789 G T DOCK10 Missense_Mutation p.F1368L 0.38 deleterious(0.01) probably_damaging(0.989) TCGA-CC-A7II-01 2 239010624 239010624 C T ESPNL Missense_Mutation p.R113C 0.36 deleterious(0) probably_damaging(1) TCGA-CC-A7II-01 2 242202212 242202212 C T HDLBP Missense_Mutation p.D122N 0.38 tolerated(0.14) possibly_damaging(0.609) TCGA-CC-A7II-01 2 26699163 26699163 C A OTOF Missense_Mutation p.G900V 0.40 deleterious(0) probably_damaging(1) TCGA-CC-A7II-01 2 27248563 27248563 C T MAPRE3 Silent p.G194G 0.40 TCGA-CC-A7II-01 2 27804122 27804122 C A C2orf16 Silent p.P1561P 0.20 TCGA-CC-A7II-01 2 70933425 70933425 G T ADD2 Missense_Mutation p.A39E 0.41 deleterious(0) benign(0.142) TCGA-CC-A7II-01 3 132438610 132438610 T G NPHP3 Missense_Mutation p.Q153P 0.43 deleterious(0.05) benign(0.037) TCGA-CC-A7II-01 3 160134114 160134114 G T SMC4 Nonsense_Mutation p.E450* 0.38 TCGA-CC-A7II-01 3 183210427 183210427 G T KLHL6 Silent p.I473I 0.27 TCGA-CC-A7II-01 3 38743417 38743417 C A SCN10A Missense_Mutation p.V1524F 0.30 deleterious(0.03) benign(0.367) TCGA-CC-A7II-01 3 42750569 42750569 C A CCDC13 Missense_Mutation p.G684V 0.31 tolerated(0.11) probably_damaging(0.959) TCGA-CC-A7II-01 3 49201424 49201424 T C CCDC71 Missense_Mutation p.Y73C 0.37 deleterious(0) probably_damaging(0.999) TCGA-CC-A7II-01 3 49701930 49701930 G A BSN Missense_Mutation p.V3895M 0.23 possibly_damaging(0.675) TCGA-CC-A7II-01 3 49744294 49744294 G T RNF123 Missense_Mutation p.R820L 0.27 deleterious(0) probably_damaging(0.999) TCGA-CC-A7II-01 4 128651564 128651564 C T SLC25A31 5'UTR 0.23 TCGA-CC-A7II-01 4 177041113 177041113 C A WDR17 Missense_Mutation p.P159T 0.29 tolerated(0.27) possibly_damaging(0.694) TCGA-CC-A7II-01 4 69057145 69057145 A G TMPRSS11BNL Silent p.L74L 0.17 TCGA-CC-A7II-01 4 69093571 69093571 C T TMPRSS11B 3'UTR 0.20 TCGA-CC-A7II-01 4 80327763 80327763 G A GK2 Missense_Mutation p.P531L 0.24 deleterious(0.02) benign(0.033) TCGA-CC-A7II-01 4 96762495 96762495 C A PDHA2 3'UTR 0.25 TCGA-CC-A7II-01 5 10403615 10403615 G T MARCH6 Missense_Mutation p.V432F 0.25 deleterious(0) probably_damaging(0.924) TCGA-CC-A7II-01 5 140222692 140222692 G T PCDHA8 Missense_Mutation p.A596S 0.45 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-CC-A7II-01 5 1411361 1411361 G T SLC6A3 Missense_Mutation p.S422R 0.64 deleterious(0) probably_damaging(0.984) TCGA-CC-A7II-01 5 143613 143613 C A PLEKHG4B Silent p.I246I 0.24 TCGA-CC-A7II-01 5 154287212 154287212 T C GEMIN5 Silent p.S778S 0.33 TCGA-CC-A7II-01 5 177669082 177669082 G T COL23A1 Silent p.G514G 0.17 TCGA-CC-A7II-01 5 38438475 38438475 C T EGFLAM Silent p.A794A 0.59 TCGA-CC-A7II-01 5 40692406 40692406 C A PTGER4 Missense_Mutation p.P465T 0.29 tolerated_low_confidence(0.23) benign(0.001) TCGA-CC-A7II-01 5 56176951 56176951 A G MAP3K1 Missense_Mutation p.I741V 0.44 tolerated(0.17) benign(0.189) TCGA-CC-A7II-01 5 82406962 82406962 G C XRCC4 Silent p.T85T 0.23 TCGA-CC-A7II-01 6 152129176 152129176 C A ESR1 Nonsense_Mutation p.Y43* 0.41 TCGA-CC-A7II-01 6 159210363 159210363 A T EZR Missense_Mutation p.F18Y 0.28 deleterious(0) probably_damaging(1) TCGA-CC-A7II-01 6 161507445 161507445 G T MAP3K4 Nonsense_Mutation p.E803* 0.35 TCGA-CC-A7II-01 6 31725898 31725898 C T MSH5 Intron 0.26 TCGA-CC-A7II-01 6 42928679 42928679 C T GNMT Silent p.C58C 0.41 TCGA-CC-A7II-01 6 43418725 43418725 T A DLK2 Missense_Mutation p.D235V 0.43 deleterious(0.03) possibly_damaging(0.548) TCGA-CC-A7II-01 6 44218826 44218826 A G HSP90AB1 Silent p.L333L 0.54 TCGA-CC-A7II-01 6 80816376 80816376 G A BCKDHB 5'UTR 0.34 TCGA-CC-A7II-01 6 90577673 90577673 G A CASP8AP2 RNA 0.30 TCGA-CC-A7II-01 7 129845243 129845243 C G TMEM209 5'UTR 0.25 TCGA-CC-A7II-01 7 134262493 134262493 C A AKR1B15 Missense_Mutation p.T316N 0.56 tolerated(0.08) possibly_damaging(0.789) TCGA-CC-A7II-01 7 137080389 137080389 C A DGKI Missense_Mutation p.Q1012H 0.26 tolerated(0.99) possibly_damaging(0.898) TCGA-CC-A7II-01 7 144150676 144150676 C A TPK1 Missense_Mutation p.D232Y 0.24 deleterious(0) probably_damaging(0.984) TCGA-CC-A7II-01 7 150171330 150171330 G T GIMAP8 Missense_Mutation p.D305Y 0.54 deleterious(0) probably_damaging(0.994) TCGA-CC-A7II-01 7 150696315 150696315 G C NOS3 Missense_Mutation p.A332P 0.65 deleterious(0) probably_damaging(0.999) TCGA-CC-A7II-01 7 23338990 23338990 G T MALSU1 Missense_Mutation p.V7L 0.60 tolerated_low_confidence(0.11) benign(0.034) TCGA-CC-A7II-01 7 23509624 23509624 T A IGF2BP3 Nonsense_Mutation p.K36* 0.39 TCGA-CC-A7II-01 7 38457451 38457451 C A AMPH Missense_Mutation p.A458S 0.29 tolerated(0.26) benign(0.05) TCGA-CC-A7II-01 7 45039909 45039909 G T CCM2 5'UTR 0.57 TCGA-CC-A7II-01 7 4825905 4825905 A T AP5Z1 Missense_Mutation p.E386V 0.40 deleterious(0) possibly_damaging(0.877) TCGA-CC-A7II-01 7 6777143 6777143 G A PMS2CL RNA 0.38 TCGA-CC-A7II-01 7 81591312 81591312 G T CACNA2D1 Missense_Mutation p.A955D 0.34 tolerated(0.74) benign(0.003) TCGA-CC-A7II-01 7 98256508 98256508 G T NPTX2 Missense_Mutation p.G307V 0.47 deleterious(0.03) probably_damaging(0.995) TCGA-CC-A7II-01 8 124084977 124084977 G T TBC1D31 5'UTR 0.11 TCGA-CC-A7II-01 8 125074249 125074249 G T FER1L6 Missense_Mutation p.V1102L 0.80 tolerated(0.7) benign(0.001) TCGA-CC-A7II-01 8 139737668 139737668 G A COL22A1 Missense_Mutation p.P719S 0.05 unknown(0) TCGA-CC-A7II-01 8 140631020 140631020 G T KCNK9 Missense_Mutation p.F202L 0.77 deleterious(0.04) probably_damaging(0.914) TCGA-CC-A7II-01 8 144891811 144891811 G A SCRIB Silent p.P536P 0.78 TCGA-CC-A7II-01 8 1514022 1514022 G T DLGAP2 Silent p.L388L 0.42 TCGA-CC-A7II-01 8 22105780 22105780 G T POLR3D Nonsense_Mutation p.E159* 0.05 TCGA-CC-A7II-01 9 115421771 115421771 G A KIAA1958 Missense_Mutation p.A525T 0.43 tolerated(0.71) benign(0.022) TCGA-CC-A7II-01 9 138392921 138392921 C T MRPS2 Missense_Mutation p.L41F 0.35 tolerated(0.21) benign(0.008) TCGA-CC-A7II-01 9 139873558 139873558 C A PTGDS Silent p.G76G 0.35 TCGA-CC-A7II-01 9 2097384 2097384 G T SMARCA2 Splice_Site p.X998_splice 0.43 TCGA-CC-A7II-01 9 2097385 2097385 G C SMARCA2 Missense_Mutation p.G998R 0.43 benign(0.384) TCGA-CC-A7II-01 9 35068346 35068346 C T VCP Missense_Mutation p.D11N 0.37 tolerated(0.05) benign(0.043) TCGA-CC-A7II-01 9 39100015 39100015 C A CNTNAP3 Missense_Mutation p.S963I 0.36 deleterious(0) probably_damaging(0.939) TCGA-CC-A7II-01 9 5923025 5923025 A G KIAA2026 Silent p.L991L 0.36 TCGA-CC-A7II-01 9 98638251 98638251 G T ERCC6L2 5'UTR 0.44 TCGA-CC-A7II-01 X 102334693 102334693 G A NXF3 Silent p.A386A 0.75 TCGA-CC-A7II-01 X 22291221 22291221 G T ZNF645 Missense_Mutation p.W38L 0.79 tolerated(0.2) benign(0.003) TCGA-CC-A7II-01 X 32834720 32834720 T A DMD Missense_Mutation p.Q132L 0.65 benign(0.111) TCGA-CC-A7IJ-01 10 15290660 15290660 C A FAM171A1 Silent p.A244A 0.31 TCGA-CC-A7IJ-01 10 26455035 26455035 C G MYO3A Silent p.R1013R 0.39 TCGA-CC-A7IJ-01 10 79569437 79569437 G A DLG5 Silent p.I1505I 0.27 TCGA-CC-A7IJ-01 10 93252211 93252211 C G HECTD2 Missense_Mutation p.L468V 0.36 tolerated(0.05) benign(0.311) TCGA-CC-A7IJ-01 11 104819283 104819283 A G CASP4 Missense_Mutation p.I301T 0.43 deleterious(0) probably_damaging(0.994) TCGA-CC-A7IJ-01 11 104872821 104872821 C A CASP5 Silent p.V230V 0.28 TCGA-CC-A7IJ-01 11 119059407 119059407 G C PDZD3 Missense_Mutation p.G373A 0.42 tolerated(0.8) benign(0.002) TCGA-CC-A7IJ-01 11 120811107 120811107 G T GRIK4 Missense_Mutation p.V510L 0.27 deleterious(0.04) possibly_damaging(0.792) TCGA-CC-A7IJ-01 11 20622906 20622906 T A SLC6A5 Missense_Mutation p.S79T 0.47 tolerated_low_confidence(0.55) benign(0) TCGA-CC-A7IJ-01 11 35513688 35513688 C A PAMR1 Missense_Mutation p.R95L 0.34 deleterious(0.02) probably_damaging(0.939) TCGA-CC-A7IJ-01 11 5528706 5528706 A G UBQLN3 3'UTR 0.24 TCGA-CC-A7IJ-01 11 55405983 55405983 C A OR4P4 Silent p.T50T 0.35 TCGA-CC-A7IJ-01 11 62284196 62284196 T C AHNAK 3'UTR 0.45 TCGA-CC-A7IJ-01 11 6550235 6550235 T A DNHD1 Missense_Mutation p.V744E 0.18 benign(0.215) TCGA-CC-A7IJ-01 11 6644337 6644337 G T DCHS1 Missense_Mutation p.P2857H 0.38 deleterious(0) probably_damaging(0.996) TCGA-CC-A7IJ-01 12 100646238 100646238 T C DEPDC4 3'UTR 0.64 TCGA-CC-A7IJ-01 12 100722976 100722976 C T SCYL2 Intron 0.21 TCGA-CC-A7IJ-01 12 104480666 104480666 A G HCFC2 Missense_Mutation p.T369A 0.24 deleterious(0.02) probably_damaging(0.931) TCGA-CC-A7IJ-01 12 110032905 110032905 C A MVK Missense_Mutation p.Q320K 0.15 tolerated(0.11) benign(0.065) TCGA-CC-A7IJ-01 12 110503715 110503715 C T C12orf76 5'UTR 0.35 TCGA-CC-A7IJ-01 12 1192448 1192448 C G ERC1 Missense_Mutation p.T263R 0.12 deleterious(0.02) probably_damaging(0.98) TCGA-CC-A7IJ-01 12 122218747 122218747 G T RHOF Intron 0.26 TCGA-CC-A7IJ-01 12 130015669 130015669 A T TMEM132D Missense_Mutation p.D350E 0.27 tolerated(1) benign(0.008) TCGA-CC-A7IJ-01 12 26752255 26752255 C T ITPR2 Silent p.R1275R 0.18 TCGA-CC-A7IJ-01 12 40740721 40740721 A T LRRK2 Missense_Mutation p.L2092F 0.40 deleterious(0.02) probably_damaging(1) TCGA-CC-A7IJ-01 12 43769295 43769295 C T ADAMTS20 Missense_Mutation p.C1778Y 0.27 deleterious(0) probably_damaging(1) TCGA-CC-A7IJ-01 12 47471425 47471425 G A AMIGO2 Missense_Mutation p.S454F 0.16 tolerated(0.06) benign(0.068) TCGA-CC-A7IJ-01 12 49743205 49743205 C G DNAJC22 Missense_Mutation p.R184G 0.45 tolerated(0.32) benign(0.345) TCGA-CC-A7IJ-01 12 50869325 50869325 G T LARP4 Missense_Mutation p.S618I 0.19 deleterious(0.02) benign(0.12) TCGA-CC-A7IJ-01 12 52056683 52056683 C T SCN8A Missense_Mutation p.R28C 0.24 deleterious(0.04) possibly_damaging(0.726) TCGA-CC-A7IJ-01 12 54757483 54757483 G C GPR84 Silent p.L51L 0.35 TCGA-CC-A7IJ-01 12 55024698 55024698 C T LACRT Missense_Mutation p.S132N 0.10 tolerated_low_confidence(0.39) benign(0.383) TCGA-CC-A7IJ-01 13 103388308 103388308 G A CCDC168 Silent p.C284C 0.36 TCGA-CC-A7IJ-01 13 42875560 42875560 C T AKAP11 Missense_Mutation p.S893L 0.47 deleterious(0.01) possibly_damaging(0.786) TCGA-CC-A7IJ-01 13 76334909 76334909 A T LMO7 5'UTR 0.50 TCGA-CC-A7IJ-01 14 102508727 102508727 G A DYNC1H1 Silent p.V4094V 0.22 TCGA-CC-A7IJ-01 14 107283189 107283189 G T IGHV7-81 Missense_Mutation p.A13E 0.57 tolerated(0.12) possibly_damaging(0.462) TCGA-CC-A7IJ-01 14 42356467 42356467 C T LRFN5 Silent p.D213D 0.50 TCGA-CC-A7IJ-01 14 64491167 64491167 C G SYNE2 Missense_Mutation p.Q1944E 0.21 benign(0.011) TCGA-CC-A7IJ-01 14 67647566 67647566 G C GPHN Missense_Mutation p.G741A 0.17 tolerated(0.99) probably_damaging(0.999) TCGA-CC-A7IJ-01 15 40916828 40916828 G A CASC5 Missense_Mutation p.G1482R 0.53 deleterious(0.05) benign(0.093) TCGA-CC-A7IJ-01 15 43622597 43622597 C T LCMT2 Missense_Mutation p.G31R 0.15 deleterious(0.02) probably_damaging(0.99) TCGA-CC-A7IJ-01 15 75705145 75705145 C T SIN3A Missense_Mutation p.A239T 0.51 tolerated(0.47) benign(0.036) TCGA-CC-A7IJ-01 16 19883202 19883202 C T GPRC5B Silent p.E322E 0.45 TCGA-CC-A7IJ-01 16 20565147 20565147 G C ACSM2B Missense_Mutation p.A231G 0.06 deleterious(0) probably_damaging(0.913) TCGA-CC-A7IJ-01 16 2138085 2138088 TCGT - TSC2 Frame_Shift_Del p.I1702Sfs*123 0.39 TCGA-CC-A7IJ-01 16 50353089 50353089 T C BRD7 3'UTR 0.44 TCGA-CC-A7IJ-01 16 56642526 56642526 G C MT2A 5'UTR 0.50 TCGA-CC-A7IJ-01 16 58589731 58589731 C A CNOT1 Missense_Mutation p.R854L 0.50 deleterious(0) possibly_damaging(0.866) TCGA-CC-A7IJ-01 16 67877505 67877505 C T THAP11 3'UTR 0.60 TCGA-CC-A7IJ-01 16 84733660 84733660 G T USP10 5'UTR 0.14 TCGA-CC-A7IJ-01 16 87723913 87723913 C A JPH3 Silent p.G649G 0.65 TCGA-CC-A7IJ-01 17 39622138 39622138 T C KRT32 Missense_Mutation p.I199V 0.19 tolerated(0.08) benign(0.13) TCGA-CC-A7IJ-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.62 deleterious(0) probably_damaging(0.997) TCGA-CC-A7IJ-01 17 76887993 76887993 G A DDC8 Missense_Mutation p.A198V 0.63 tolerated(0.07) possibly_damaging(0.708) TCGA-CC-A7IJ-01 18 12277129 12277129 C A CIDEA Missense_Mutation p.L174M 0.41 deleterious(0.02) possibly_damaging(0.573) TCGA-CC-A7IJ-01 18 19098035 19098035 T A GREB1L Missense_Mutation p.I1771N 0.45 deleterious(0) possibly_damaging(0.468) TCGA-CC-A7IJ-01 18 29126582 29126582 G C DSG2 Missense_Mutation p.G1078A 0.14 tolerated(0.07) benign(0.01) TCGA-CC-A7IJ-01 18 46287965 46287965 A G CTIF Missense_Mutation p.S428G 0.43 deleterious(0.01) benign(0.233) TCGA-CC-A7IJ-01 18 50278626 50278626 G AAT DCC Frame_Shift_Ins p.Q100Yfs*23 0.13 TCGA-CC-A7IJ-01 18 61645627 61645627 T C SERPINB8 Missense_Mutation p.F29L 0.08 deleterious(0.02) benign(0.323) TCGA-CC-A7IJ-01 18 63547825 63547825 G T CDH7 Missense_Mutation p.D685Y 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-CC-A7IJ-01 19 11417449 11417449 T A TSPAN16 Intron 0.19 TCGA-CC-A7IJ-01 19 14991644 14991644 G A OR7A17 Missense_Mutation p.P175L 0.41 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-CC-A7IJ-01 19 15298796 15298796 C A NOTCH3 Missense_Mutation p.G501V 0.45 deleterious(0) probably_damaging(0.998) TCGA-CC-A7IJ-01 19 21216933 21216933 G C ZNF430 Missense_Mutation p.E89Q 0.20 deleterious(0.05) benign(0.391) TCGA-CC-A7IJ-01 19 33870740 33870740 A G CEBPG 3'UTR 0.19 TCGA-CC-A7IJ-01 19 3544813 3544813 G C MFSD12 Missense_Mutation p.R472G 0.14 possibly_damaging(0.766) TCGA-CC-A7IJ-01 19 35614352 35614352 C T FXYD3 Silent p.A142A 0.17 TCGA-CC-A7IJ-01 19 41381349 41381349 A G CYP2A7 3'UTR 0.19 TCGA-CC-A7IJ-01 19 4159678 4159678 G T CREB3L3 Nonsense_Mutation p.G159* 0.06 TCGA-CC-A7IJ-01 19 43098936 43098936 C T CEACAM8 Nonsense_Mutation p.W15* 0.24 TCGA-CC-A7IJ-01 19 49253562 49253562 G C FUT1 Missense_Mutation p.A326G 0.51 tolerated(0.05) probably_damaging(0.977) TCGA-CC-A7IJ-01 19 51301909 51301909 G A C19orf48 5'UTR 0.37 TCGA-CC-A7IJ-01 19 58290133 58290133 G A ZNF586 Missense_Mutation p.G60R 0.19 tolerated(0.08) benign(0.073) TCGA-CC-A7IJ-01 19 58453067 58453067 T C ZNF256 Missense_Mutation p.Q370R 0.20 tolerated(0.21) benign(0.062) TCGA-CC-A7IJ-01 1 10707798 10707798 T C CASZ1 Intron 0.19 TCGA-CC-A7IJ-01 1 10713699 10713699 C G CASZ1 Silent p.L805L 0.13 TCGA-CC-A7IJ-01 1 13475226 13475226 A C PRAMEF18 Silent p.T301T 0.11 TCGA-CC-A7IJ-01 1 151015463 151015463 C A BNIPL Silent p.T155T 0.21 TCGA-CC-A7IJ-01 1 152276077 152276077 G T FLG Missense_Mutation p.P3762Q 0.25 unknown(0) TCGA-CC-A7IJ-01 1 153920605 153920605 G T CRTC2 Missense_Mutation p.R688S 0.18 deleterious(0) probably_damaging(0.992) TCGA-CC-A7IJ-01 1 161695608 161695608 C T FCRLB Intron 0.30 TCGA-CC-A7IJ-01 1 16256548 16256548 A C SPEN Missense_Mutation p.E1271D 0.27 benign(0.004) TCGA-CC-A7IJ-01 1 17083497 17083497 C T MST1L RNA 0.15 TCGA-CC-A7IJ-01 1 19612757 19612757 G A AKR7A3 Silent p.D108D 0.28 TCGA-CC-A7IJ-01 1 197072361 197072361 T G ASPM Missense_Mutation p.Y2007S 0.19 deleterious(0.03) probably_damaging(0.98) TCGA-CC-A7IJ-01 1 197404289 197404289 C A CRB1 Missense_Mutation p.T1099K 0.23 deleterious(0) probably_damaging(1) TCGA-CC-A7IJ-01 1 228474027 228474027 G T OBSCN Missense_Mutation p.A3514S 0.34 possibly_damaging(0.451) TCGA-CC-A7IJ-01 1 234743411 234743411 G A IRF2BP2 Silent p.T412T 0.18 TCGA-CC-A7IJ-01 1 247587376 247587376 C A NLRP3 Missense_Mutation p.P211T 0.18 deleterious(0) possibly_damaging(0.616) TCGA-CC-A7IJ-01 1 39800434 39800434 A - MACF1 Intron 0.20 TCGA-CC-A7IJ-01 1 43896050 43896050 G A SZT2 Missense_Mutation p.M1433I 0.32 tolerated(0.24) benign(0) TCGA-CC-A7IJ-01 1 65874377 65874377 A T DNAJC6 Missense_Mutation p.N849Y 0.26 deleterious(0) possibly_damaging(0.889) TCGA-CC-A7IJ-01 1 6661948 6661948 C A KLHL21 Missense_Mutation p.Q310H 0.24 tolerated(0.19) benign(0.005) TCGA-CC-A7IJ-01 1 9078428 9078428 G C SLC2A7 Missense_Mutation p.S148C 0.17 tolerated(0.15) probably_damaging(0.982) TCGA-CC-A7IJ-01 20 13983050 13983050 G A MACROD2 Missense_Mutation p.E55K 0.53 tolerated(0.34) possibly_damaging(0.6) TCGA-CC-A7IJ-01 20 61522428 61522428 C T DIDO1 Missense_Mutation p.S1142N 0.22 probably_damaging(0.999) TCGA-CC-A7IJ-01 20 62044867 62044867 C A KCNQ2 Missense_Mutation p.V567F 0.27 deleterious(0) probably_damaging(0.997) TCGA-CC-A7IJ-01 20 869031 869031 A G ANGPT4 Missense_Mutation p.S173P 0.45 deleterious(0) probably_damaging(0.979) TCGA-CC-A7IJ-01 20 9424627 9424627 G T PLCB4 Splice_Site p.X910_splice 0.13 TCGA-CC-A7IJ-01 21 31538834 31538834 A C CLDN17 Silent p.A34A 0.19 TCGA-CC-A7IJ-01 21 38461097 38461097 A T TTC3 Splice_Site p.X113_splice 0.32 TCGA-CC-A7IJ-01 21 44108091 44108091 G A PDE9A Missense_Mutation p.A69T 0.34 tolerated(0.32) benign(0.019) TCGA-CC-A7IJ-01 21 44845966 44845966 C T SIK1 Silent p.R31R 0.32 TCGA-CC-A7IJ-01 21 45993847 45993847 C - KRTAP10-4 Frame_Shift_Del p.C72Afs*108 0.31 TCGA-CC-A7IJ-01 22 25960980 25960980 G A ADRBK2 5'UTR 0.12 TCGA-CC-A7IJ-01 22 31500855 31500855 G C SELM 3'UTR 0.14 TCGA-CC-A7IJ-01 22 41318489 41318489 A C XPNPEP3 Missense_Mutation p.K403T 0.09 tolerated(0.12) benign(0.014) TCGA-CC-A7IJ-01 22 42177763 42177763 G A MEI1 Missense_Mutation p.A1001T 0.58 tolerated(0.37) benign(0.002) TCGA-CC-A7IJ-01 22 43608598 43608598 C A SCUBE1 Missense_Mutation p.G685V 0.33 deleterious(0.03) probably_damaging(1) TCGA-CC-A7IJ-01 22 50967719 50967743 GTCTCCTCCAGATCCATGCCCCGAA - TYMP Frame_Shift_Del p.L80Pfs*4 0.46 TCGA-CC-A7IJ-01 2 102808473 102808473 T A IL1RL2 Missense_Mutation p.L128I 0.20 tolerated(0.43) benign(0.156) TCGA-CC-A7IJ-01 2 155098670 155098670 C A GALNT13 Missense_Mutation p.L147I 0.38 tolerated(0.43) benign(0.239) TCGA-CC-A7IJ-01 2 179604561 179604561 C - TTN Frame_Shift_Del p.A4467Lfs*3 0.17 TCGA-CC-A7IJ-01 2 202211384 202211384 C A ALS2CR12 Silent p.V83V 0.23 TCGA-CC-A7IJ-01 2 237490297 237490297 T C ACKR3 3'UTR 0.36 TCGA-CC-A7IJ-01 2 27456323 27456323 T G CAD Silent p.A1045A 0.12 TCGA-CC-A7IJ-01 2 27590910 27590910 C A EIF2B4 Silent p.L249L 0.08 TCGA-CC-A7IJ-01 2 31596741 31596741 G T XDH Missense_Mutation p.Q562K 0.17 deleterious(0.03) benign(0.157) TCGA-CC-A7IJ-01 2 43452474 43452474 C G ZFP36L2 Missense_Mutation p.E157Q 0.22 deleterious(0) probably_damaging(0.99) TCGA-CC-A7IJ-01 2 44176800 44176800 T G LRPPRC Splice_Site p.X560_splice 0.35 TCGA-CC-A7IJ-01 2 5841308 5841308 T - SOX11 3'UTR 0.30 TCGA-CC-A7IJ-01 2 61413791 61413791 T A AHSA2 Missense_Mutation p.L95Q 0.27 tolerated(0.54) benign(0.03) TCGA-CC-A7IJ-01 2 84775472 84775472 A T DNAH6 Missense_Mutation p.Y416F 0.17 tolerated(0.62) benign(0) TCGA-CC-A7IJ-01 2 89475865 89475865 C A IGKV2-24 Missense_Mutation p.V103L 0.47 tolerated(0.19) benign(0.016) TCGA-CC-A7IJ-01 2 89475866 89475866 C A IGKV2-24 Missense_Mutation p.R102S 0.47 tolerated(0.36) benign(0.014) TCGA-CC-A7IJ-01 2 99013018 99013018 A G CNGA3 Missense_Mutation p.D462G 0.15 deleterious(0) probably_damaging(0.933) TCGA-CC-A7IJ-01 3 10970961 10970961 G A SLC6A11 Missense_Mutation p.R436Q 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-CC-A7IJ-01 3 121514404 121514404 G A IQCB1 Nonsense_Mutation p.Q296* 0.06 TCGA-CC-A7IJ-01 3 135721147 135721147 T C PPP2R3A Silent p.D269D 0.21 TCGA-CC-A7IJ-01 3 140396893 140396893 T C TRIM42 5'UTR 0.50 TCGA-CC-A7IJ-01 3 156271447 156271447 T G SSR3 Missense_Mutation p.H86P 0.20 deleterious(0) probably_damaging(0.993) TCGA-CC-A7IJ-01 3 183145807 183145807 C G MCF2L2 5'UTR 0.13 TCGA-CC-A7IJ-01 3 189590736 189590736 C T TP63 Missense_Mutation p.T434M 0.39 deleterious(0.02) possibly_damaging(0.628) TCGA-CC-A7IJ-01 3 193025125 193025125 G A ATP13A5 Silent p.N853N 0.33 TCGA-CC-A7IJ-01 3 26751375 26751375 T A LRRC3B Missense_Mutation p.L71Q 0.26 deleterious(0) probably_damaging(1) TCGA-CC-A7IJ-01 3 38938564 38938564 A T SCN11A Silent p.R725R 0.48 TCGA-CC-A7IJ-01 3 48697293 48697293 C T CELSR3 Silent p.V925V 0.49 TCGA-CC-A7IJ-01 3 53851839 53851839 C T CHDH Missense_Mutation p.V584I 0.27 tolerated(0.09) benign(0.048) TCGA-CC-A7IJ-01 3 57139919 57139919 T C IL17RD Missense_Mutation p.H238R 0.37 tolerated(0.28) possibly_damaging(0.754) TCGA-CC-A7IJ-01 4 141888999 141888999 A G RNF150 Silent p.I171I 0.50 TCGA-CC-A7IJ-01 4 156136300 156136300 C T NPY2R 3'UTR 0.21 TCGA-CC-A7IJ-01 4 177146466 177146466 G A ASB5 Missense_Mutation p.H75Y 0.44 deleterious(0) probably_damaging(0.996) TCGA-CC-A7IJ-01 4 22425952 22425952 A G GPR125 Silent p.I489I 0.58 TCGA-CC-A7IJ-01 4 47525056 47525056 C G ATP10D Missense_Mutation p.C171W 0.25 tolerated(0.17) probably_damaging(0.943) TCGA-CC-A7IJ-01 4 57547858 57547858 G T HOPX 5'UTR 0.35 TCGA-CC-A7IJ-01 5 10415698 10415698 A G MARCH6 Missense_Mutation p.I689V 0.43 tolerated(1) benign(0.001) TCGA-CC-A7IJ-01 5 1330438 1330438 C G CLPTM1L Missense_Mutation p.S346T 0.05 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IJ-01 5 137485482 137485482 T C BRD8 Missense_Mutation p.E1042G 0.06 tolerated(0.32) benign(0) TCGA-CC-A7IJ-01 5 140250482 140250482 G A PCDHA11 Silent p.A598A 0.32 TCGA-CC-A7IJ-01 5 140798922 140798922 G A PCDHGB7 Missense_Mutation p.R499Q 0.23 tolerated(0.48) benign(0.025) TCGA-CC-A7IJ-01 5 170668124 170668124 C T RANBP17 Missense_Mutation p.S872L 0.18 deleterious(0) benign(0.141) TCGA-CC-A7IJ-01 5 73069858 73069858 C A ARHGEF28 Silent p.V218V 0.25 TCGA-CC-A7IJ-01 6 106969168 106969168 T C AIM1 Missense_Mutation p.L954P 0.41 tolerated(0.22) benign(0.015) TCGA-CC-A7IJ-01 6 116439079 116439079 A G NT5DC1 Missense_Mutation p.Q167R 0.18 tolerated(0.23) benign(0.138) TCGA-CC-A7IJ-01 6 117128020 117128020 A T GPRC6A Missense_Mutation p.V283D 0.23 deleterious(0) probably_damaging(0.991) TCGA-CC-A7IJ-01 6 143828467 143828467 A T FUCA2 Missense_Mutation p.F107I 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-CC-A7IJ-01 6 146127013 146127013 C G FBXO30 Missense_Mutation p.E177Q 0.32 tolerated(0.12) benign(0.05) TCGA-CC-A7IJ-01 6 24278324 24278324 T A DCDC2 Missense_Mutation p.K292I 0.16 deleterious(0.01) probably_damaging(0.935) TCGA-CC-A7IJ-01 6 25799088 25799088 G C SLC17A1 Silent p.G443G 0.37 TCGA-CC-A7IJ-01 6 26104441 26104441 A G HIST1H4C Missense_Mutation p.Y89C 0.18 deleterious(0.04) possibly_damaging(0.459) TCGA-CC-A7IJ-01 6 26468554 26468554 T A BTN2A1 Missense_Mutation p.L454Q 0.20 deleterious(0) probably_damaging(0.997) TCGA-CC-A7IJ-01 6 28227197 28227197 T C NKAPL Silent p.S16S 0.18 TCGA-CC-A7IJ-01 6 31608213 31608213 T C BAG6 Silent p.E999E 0.16 TCGA-CC-A7IJ-01 6 31726650 31726650 C G MSH5 Missense_Mutation p.L442V 0.24 tolerated(0.1) possibly_damaging(0.614) TCGA-CC-A7IJ-01 6 46609971 46609971 C T CYP39A1 Missense_Mutation p.G81E 0.09 deleterious(0.01) possibly_damaging(0.904) TCGA-CC-A7IJ-01 6 49583450 49583450 G T RHAG Missense_Mutation p.A176D 0.19 deleterious(0) probably_damaging(0.986) TCGA-CC-A7IJ-01 6 65622636 65622636 T A EYS Silent p.R794R 0.11 TCGA-CC-A7IJ-01 6 74202034 74202034 A G MTO1 Missense_Mutation p.Y612C 0.31 deleterious(0.04) probably_damaging(0.944) TCGA-CC-A7IJ-01 6 96651384 96651384 C A FUT9 Missense_Mutation p.T118K 0.16 tolerated(0.33) benign(0.016) TCGA-CC-A7IJ-01 7 100677761 100677761 T A MUC17 Missense_Mutation p.S1022T 0.16 probably_damaging(0.958) TCGA-CC-A7IJ-01 7 103969638 103969638 G T LHFPL3 Silent p.V137V 0.06 TCGA-CC-A7IJ-01 7 104377307 104377307 G C LHFPL3 Missense_Mutation p.G211R 0.23 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IJ-01 7 108113028 108113028 A G PNPLA8 Silent p.S722S 0.15 TCGA-CC-A7IJ-01 7 12666242 12666242 A C SCIN Missense_Mutation p.I339L 0.66 tolerated(1) benign(0.032) TCGA-CC-A7IJ-01 7 128485033 128485033 G A FLNC Missense_Mutation p.E1172K 0.24 tolerated(0.07) probably_damaging(0.999) TCGA-CC-A7IJ-01 7 136701545 136701545 G T CHRM2 3'UTR 0.44 TCGA-CC-A7IJ-01 7 150554178 150554178 T C AOC1 Missense_Mutation p.V207A 0.27 deleterious(0) probably_damaging(0.966) TCGA-CC-A7IJ-01 7 150695448 150695448 T G NOS3 Missense_Mutation p.F196V 0.19 deleterious(0) probably_damaging(0.982) TCGA-CC-A7IJ-01 7 157155965 157155965 G T DNAJB6 Splice_Site p.X59_splice 0.23 TCGA-CC-A7IJ-01 7 158734669 158734669 G C WDR60 Silent p.P944P 0.22 TCGA-CC-A7IJ-01 7 31864548 31864548 C T PDE1C Missense_Mutation p.E507K 0.04 deleterious(0.02) probably_damaging(0.999) TCGA-CC-A7IJ-01 7 36435972 36435972 G T ANLN Missense_Mutation p.R39L 0.19 deleterious(0) probably_damaging(0.991) TCGA-CC-A7IJ-01 7 57529255 57529255 T A ZNF716 Missense_Mutation p.F363Y 0.35 tolerated(1) benign(0.037) TCGA-CC-A7IJ-01 7 80295781 80295781 C G CD36 Missense_Mutation p.H242D 0.38 deleterious(0.01) benign(0.088) TCGA-CC-A7IJ-01 7 98645348 98645348 C A SMURF1 Missense_Mutation p.G397C 0.27 deleterious(0) probably_damaging(0.993) TCGA-CC-A7IJ-01 8 101153047 101153047 G A FBXO43 Nonsense_Mutation p.Q479* 0.22 TCGA-CC-A7IJ-01 8 113326812 113326812 A G CSMD3 Silent p.S2465S 0.14 TCGA-CC-A7IJ-01 8 121706115 121706115 T C SNTB1 Missense_Mutation p.K202R 0.24 tolerated(0.22) benign(0.006) TCGA-CC-A7IJ-01 8 124553194 124553194 C T FBXO32 Missense_Mutation p.G21S 0.30 deleterious(0) probably_damaging(0.918) TCGA-CC-A7IJ-01 8 144776267 144776267 G A ZNF707 Missense_Mutation p.R228H 0.10 tolerated(0.09) benign(0.397) TCGA-CC-A7IJ-01 8 145739484 145739484 C T RECQL4 Missense_Mutation p.R629Q 0.10 deleterious(0.03) possibly_damaging(0.892) TCGA-CC-A7IJ-01 8 17072756 17072756 C T ZDHHC2 Missense_Mutation p.H321Y 0.50 tolerated(0.38) benign(0.261) TCGA-CC-A7IJ-01 8 82670408 82670408 A T CHMP4C Missense_Mutation p.E172V 0.17 deleterious(0.02) probably_damaging(0.923) TCGA-CC-A7IJ-01 8 86041583 86041583 A G LRRCC1 Missense_Mutation p.E532G 0.36 deleterious(0) possibly_damaging(0.786) TCGA-CC-A7IJ-01 8 92213018 92213018 A T LRRC69 Nonsense_Mutation p.K311* 0.38 TCGA-CC-A7IJ-01 9 107595004 107595004 C T ABCA1 Missense_Mutation p.D454N 0.23 tolerated(0.64) benign(0) TCGA-CC-A7IJ-01 9 121930349 121930349 G C BRINP1 Missense_Mutation p.N433K 0.34 deleterious(0) probably_damaging(0.932) TCGA-CC-A7IJ-01 9 121976358 121976358 C T BRINP1 Missense_Mutation p.G254E 0.58 tolerated(0.22) benign(0.366) TCGA-CC-A7IJ-01 9 131873871 131873871 C A PPP2R4 5'UTR 0.53 TCGA-CC-A7IJ-01 9 135276847 135276847 C T TTF1 Silent p.A454A 0.57 TCGA-CC-A7IJ-01 9 20944661 20944661 C T FOCAD Missense_Mutation p.S1148F 0.22 deleterious(0) probably_damaging(0.938) TCGA-CC-A7IJ-01 9 36223377 36223377 C T GNE Silent p.L499L 0.23 TCGA-CC-A7IJ-01 9 4117860 4117860 C G GLIS3 Missense_Mutation p.G540R 0.89 deleterious(0) probably_damaging(1) TCGA-CC-A7IJ-01 9 6015579 6015579 G A RANBP6 Missense_Mutation p.P10L 0.91 tolerated_low_confidence(0.05) benign(0.003) TCGA-CC-A7IJ-01 9 99525914 99525914 C T ZNF510 Missense_Mutation p.A44T 0.49 tolerated(0.05) benign(0.009) TCGA-CC-A7IJ-01 X 41588013 41588015 ATA T GPR82 3'UTR 0.22 TCGA-CC-A7IJ-01 X 74494412 74494412 C T UPRT Missense_Mutation p.A108V 0.68 deleterious(0.02) benign(0.115) TCGA-CC-A7IK-01 10 101556936 101556936 G T ABCC2 Missense_Mutation p.V239L 0.52 tolerated(0.07) benign(0.002) TCGA-CC-A7IK-01 10 104389884 104389884 A T SUFU Missense_Mutation p.D476V 0.46 deleterious(0) possibly_damaging(0.836) TCGA-CC-A7IK-01 10 105900629 105900629 T A WDR96 Missense_Mutation p.I1468L 0.10 tolerated(0.15) benign(0.007) TCGA-CC-A7IK-01 10 106924072 106924072 C G SORCS3 Missense_Mutation p.P582A 0.13 tolerated(0.33) benign(0.001) TCGA-CC-A7IK-01 10 120819149 120819149 C T EIF3A Missense_Mutation p.A470T 0.24 tolerated(0.41) unknown(0) TCGA-CC-A7IK-01 10 123276887 123276887 C A FGFR2 Intron 0.27 TCGA-CC-A7IK-01 10 127455187 127455187 A G MMP21 3'UTR 0.27 TCGA-CC-A7IK-01 10 128973670 128973670 C G FAM196A Silent p.G330G 0.19 TCGA-CC-A7IK-01 10 129350903 129350903 A T NPS Nonstop_Mutation p.*90Cext*? 0.22 TCGA-CC-A7IK-01 10 135053333 135053333 A T VENTX Missense_Mutation p.E132V 0.30 deleterious(0) probably_damaging(0.973) TCGA-CC-A7IK-01 10 20105925 20105925 T A PLXDC2 5'UTR 0.50 TCGA-CC-A7IK-01 10 27822715 27822715 A G RAB18 Missense_Mutation p.N104S 0.27 tolerated(0.16) benign(0.005) TCGA-CC-A7IK-01 10 49687731 49687731 C T ARHGAP22 Missense_Mutation p.M133I 0.29 deleterious(0) possibly_damaging(0.794) TCGA-CC-A7IK-01 10 50190696 50190696 T G WDFY4 3'UTR 0.42 TCGA-CC-A7IK-01 10 50873041 50873041 A G CHAT Silent p.P732P 0.69 TCGA-CC-A7IK-01 10 70190319 70190319 T C DNA2 Missense_Mutation p.I780M 0.27 tolerated(0.05) possibly_damaging(0.642) TCGA-CC-A7IK-01 10 73892879 73892879 T C ASCC1 Silent p.K297K 0.25 TCGA-CC-A7IK-01 10 97916998 97916998 A G ZNF518A RNA 0.55 TCGA-CC-A7IK-01 10 99623744 99623744 G A GOLGA7B Missense_Mutation p.A66T 0.24 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IK-01 11 102573828 102573828 A T MMP27 Missense_Mutation p.D121E 0.57 deleterious(0.01) probably_damaging(0.999) TCGA-CC-A7IK-01 11 103908140 103908140 G T DDI1 Missense_Mutation p.R197M 0.09 deleterious(0.02) benign(0.018) TCGA-CC-A7IK-01 11 110033998 110033998 G T ZC3H12C Missense_Mutation p.K383N 0.47 deleterious(0.04) probably_damaging(0.999) TCGA-CC-A7IK-01 11 123493322 123493322 G C GRAMD1B 3'UTR 0.56 TCGA-CC-A7IK-01 11 30946867 30946867 T C DCDC1 Missense_Mutation p.R996G 0.52 deleterious(0) benign(0.291) TCGA-CC-A7IK-01 11 36600228 36600228 C A RAG1 3'UTR 0.47 TCGA-CC-A7IK-01 11 46724704 46724704 A T ZNF408 Missense_Mutation p.E188V 0.33 deleterious(0.05) benign(0.154) TCGA-CC-A7IK-01 11 4675335 4675335 T A OR51E1 3'UTR 0.53 TCGA-CC-A7IK-01 11 47289839 47289839 A C NR1H3 Missense_Mutation p.Q377P 0.44 tolerated(0.07) possibly_damaging(0.811) TCGA-CC-A7IK-01 11 5172674 5172674 A G OR52A1 Missense_Mutation p.M309T 0.31 deleterious(0.02) benign(0.066) TCGA-CC-A7IK-01 11 552109 552109 A T LRRC56 Missense_Mutation p.Q353L 0.47 tolerated(0.09) benign(0.276) TCGA-CC-A7IK-01 11 5624771 5624771 A G TRIM6 Missense_Mutation p.I105V 0.48 deleterious(0.04) possibly_damaging(0.854) TCGA-CC-A7IK-01 11 58126348 58126348 A G OR5B17 Silent p.S65S 0.36 TCGA-CC-A7IK-01 11 63883947 63883947 C A FLRT1 Silent p.R70R 0.68 TCGA-CC-A7IK-01 11 64111953 64111953 A G CCDC88B Missense_Mutation p.E647G 0.35 tolerated_low_confidence(0.26) benign(0.004) TCGA-CC-A7IK-01 11 71293298 71293298 T C KRTAP5-11 3'UTR 0.46 TCGA-CC-A7IK-01 11 71948760 71948760 C T INPPL1 Silent p.L1158L 0.45 TCGA-CC-A7IK-01 12 120575521 120575521 T C GCN1L1 Missense_Mutation p.E2164G 0.15 benign(0.08) TCGA-CC-A7IK-01 12 123086099 123086099 A G KNTC1 Missense_Mutation p.Y1527C 0.11 deleterious(0) probably_damaging(0.994) TCGA-CC-A7IK-01 12 124427315 124427315 T C CCDC92 Missense_Mutation p.T67A 0.23 tolerated(0.3) benign(0.297) TCGA-CC-A7IK-01 12 13140036 13140036 G A HEBP1 Intron 0.88 TCGA-CC-A7IK-01 12 22676443 22676443 T A C2CD5 Silent p.I239I 0.37 TCGA-CC-A7IK-01 12 33592502 33592502 T C SYT10 5'UTR 0.29 TCGA-CC-A7IK-01 12 48064026 48064026 T A RPAP3 Missense_Mutation p.N464Y 0.35 deleterious(0.01) benign(0.36) TCGA-CC-A7IK-01 12 49391094 49391094 T A DDN Missense_Mutation p.Q522L 0.49 deleterious_low_confidence(0.05) benign(0.12) TCGA-CC-A7IK-01 12 50388003 50388003 G A RACGAP1 Missense_Mutation p.A417V 0.41 tolerated(1) benign(0.012) TCGA-CC-A7IK-01 12 51663119 51663119 A T SMAGP Intron 0.19 TCGA-CC-A7IK-01 12 52938508 52938508 A C KRT71 Missense_Mutation p.S460R 0.29 deleterious(0.02) possibly_damaging(0.866) TCGA-CC-A7IK-01 12 53073703 53073703 C A KRT1 Missense_Mutation p.G144C 0.23 tolerated(0.21) unknown(0) TCGA-CC-A7IK-01 12 57873586 57873586 A C ARHGAP9 5'UTR 0.13 TCGA-CC-A7IK-01 12 67691234 67691234 T C CAND1 Missense_Mutation p.L180P 0.43 deleterious(0) probably_damaging(0.992) TCGA-CC-A7IK-01 12 78362415 78362415 C A NAV3 Silent p.R202R 0.42 TCGA-CC-A7IK-01 12 8800721 8800721 T C MFAP5 Missense_Mutation p.E163G 0.83 deleterious(0.01) benign(0.424) TCGA-CC-A7IK-01 12 97337446 97337446 C A NEDD1 Missense_Mutation p.S475Y 0.34 tolerated(0.08) benign(0.073) TCGA-CC-A7IK-01 13 114535616 114535616 T A GAS6 Missense_Mutation p.Q315L 0.08 deleterious(0.04) probably_damaging(0.961) TCGA-CC-A7IK-01 13 114766318 114766318 G T RASA3 Silent p.T611T 0.42 TCGA-CC-A7IK-01 13 21549409 21549409 T A LATS2 Missense_Mutation p.D956V 0.34 deleterious(0) possibly_damaging(0.782) TCGA-CC-A7IK-01 13 24410481 24410481 C T MIPEP Silent p.R517R 0.30 TCGA-CC-A7IK-01 13 25284608 25284608 A G ATP12A Missense_Mutation p.Q931R 0.47 tolerated(0.05) probably_damaging(0.999) TCGA-CC-A7IK-01 13 37679439 37679439 G T CSNK1A1L 5'UTR 0.09 TCGA-CC-A7IK-01 13 41656941 41656941 C T WBP4 Missense_Mutation p.T341I 0.21 tolerated(0.15) possibly_damaging(0.677) TCGA-CC-A7IK-01 13 43174893 43174893 A G TNFSF11 Silent p.L131L 0.34 TCGA-CC-A7IK-01 14 105408806 105408806 C T AHNAK2 Missense_Mutation p.V4328M 0.64 benign(0.439) TCGA-CC-A7IK-01 14 25101298 25101298 T A GZMB Missense_Mutation p.R122S 0.29 tolerated(0.44) benign(0.001) TCGA-CC-A7IK-01 14 45433642 45433642 A T FAM179B Missense_Mutation p.Q673L 0.82 tolerated(0.05) benign(0.085) TCGA-CC-A7IK-01 14 63860613 63860613 T C PPP2R5E Silent p.A258A 0.17 TCGA-CC-A7IK-01 14 74411141 74411141 C G FAM161B Missense_Mutation p.Q337H 0.22 deleterious(0.03) benign(0.046) TCGA-CC-A7IK-01 14 90651420 90651420 C A KCNK13 3'UTR 0.75 TCGA-CC-A7IK-01 14 96707630 96707630 A G BDKRB2 Missense_Mutation p.Y322C 0.12 deleterious(0.03) benign(0.272) TCGA-CC-A7IK-01 15 100214726 100214726 A G MEF2A Silent p.T175T 0.43 TCGA-CC-A7IK-01 15 101562141 101562141 C A LRRK1 Missense_Mutation p.P611T 0.53 deleterious(0) probably_damaging(1) TCGA-CC-A7IK-01 15 102346471 102346471 A G OR4F6 Silent p.R183R 0.47 TCGA-CC-A7IK-01 15 20644343 20644343 T G HERC2P3 RNA 0.30 TCGA-CC-A7IK-01 15 31776404 31776404 A C OTUD7A Missense_Mutation p.L625R 0.50 deleterious(0) probably_damaging(0.997) TCGA-CC-A7IK-01 15 42362276 42362276 C A PLA2G4D Missense_Mutation p.E687D 0.21 tolerated(1) benign(0.098) TCGA-CC-A7IK-01 15 49033896 49033896 T A CEP152 Missense_Mutation p.E1332V 0.21 deleterious(0) probably_damaging(0.948) TCGA-CC-A7IK-01 15 63970246 63970246 C A HERC1 Missense_Mutation p.D2290Y 0.39 benign(0.153) TCGA-CC-A7IK-01 15 63986548 63986548 T A HERC1 Missense_Mutation p.S1815C 0.20 probably_damaging(0.964) TCGA-CC-A7IK-01 15 66797768 66797768 A T RPL4 5'Flank 0.33 TCGA-CC-A7IK-01 15 79059245 79059245 G T ADAMTS7 Missense_Mutation p.P1003H 0.39 tolerated(0.07) possibly_damaging(0.664) TCGA-CC-A7IK-01 15 84568428 84568428 T A ADAMTSL3 Missense_Mutation p.W549R 0.37 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IK-01 15 85438721 85438721 T A SLC28A1 Intron 0.46 TCGA-CC-A7IK-01 15 91522459 91522460 - A PRC1 Frame_Shift_Ins p.E346* 0.21 TCGA-CC-A7IK-01 16 20860914 20860914 A G AC004381.6 3'UTR 0.19 TCGA-CC-A7IK-01 16 21654919 21654919 A T IGSF6 Missense_Mutation p.S179T 0.18 tolerated(0.06) benign(0.322) TCGA-CC-A7IK-01 16 2239124 2239124 G A CASKIN1 Missense_Mutation p.A174V 0.07 possibly_damaging(0.869) TCGA-CC-A7IK-01 16 2903200 2903200 G T PRSS22 Missense_Mutation p.S283Y 0.50 deleterious(0.02) probably_damaging(0.914) TCGA-CC-A7IK-01 16 31194105 31194105 T C FUS Intron 0.20 TCGA-CC-A7IK-01 16 3304779 3304779 G C MEFV Missense_Mutation p.Q97E 0.27 tolerated(0.19) benign(0.008) TCGA-CC-A7IK-01 16 5050737 5050737 T A SEC14L5 Missense_Mutation p.L351Q 0.38 deleterious(0) probably_damaging(0.997) TCGA-CC-A7IK-01 16 55897346 55897346 T A CES5A Nonsense_Mutation p.K271* 0.13 TCGA-CC-A7IK-01 16 56435757 56435757 T A AMFR Splice_Site p.X325_splice 0.21 TCGA-CC-A7IK-01 16 58313726 58313726 A G CCDC113 3'UTR 0.79 TCGA-CC-A7IK-01 16 67360630 67360630 G A KCTD19 5'UTR 0.15 TCGA-CC-A7IK-01 16 72993128 72993128 C T ZFHX3 Missense_Mutation p.R306Q 0.23 possibly_damaging(0.885) TCGA-CC-A7IK-01 16 81691394 81691394 C A CMIP Silent p.T218T 0.21 TCGA-CC-A7IK-01 16 85667714 85667714 G A GSE1 Missense_Mutation p.A68T 0.24 deleterious(0) unknown(0) TCGA-CC-A7IK-01 17 18653121 18653121 G A FBXW10 Missense_Mutation p.D253N 0.05 tolerated(0.49) benign(0.009) TCGA-CC-A7IK-01 17 19741841 19741841 T C ULK2 Missense_Mutation p.R254G 0.48 deleterious(0) benign(0.256) TCGA-CC-A7IK-01 17 20353174 20353174 T G LGALS9B 3'Flank 0.28 TCGA-CC-A7IK-01 17 25976090 25976090 C A LGALS9 3'UTR 0.26 TCGA-CC-A7IK-01 17 26089920 26089920 T A NOS2 Missense_Mutation p.I902F 0.42 tolerated(0.08) benign(0.009) TCGA-CC-A7IK-01 17 26695961 26695961 T A VTN Missense_Mutation p.N253I 0.47 deleterious(0) possibly_damaging(0.905) TCGA-CC-A7IK-01 17 27017150 27017150 C T SUPT6H Silent p.S1131S 0.47 TCGA-CC-A7IK-01 17 27829620 27829620 A G TAOK1 Missense_Mutation p.Y406C 0.15 tolerated(0.16) benign(0.005) TCGA-CC-A7IK-01 17 29554603 29554603 A C NF1 Missense_Mutation p.K796N 0.13 tolerated(0.1) probably_damaging(0.977) TCGA-CC-A7IK-01 17 3195335 3195335 T C OR3A1 Missense_Mutation p.Y181C 0.81 deleterious(0.02) possibly_damaging(0.798) TCGA-CC-A7IK-01 17 33921086 33921086 G T AP2B1 Nonsense_Mutation p.G13* 0.19 TCGA-CC-A7IK-01 17 34105697 34105697 A T MMP28 3'UTR 0.40 TCGA-CC-A7IK-01 17 39684180 39684180 T C KRT19 Missense_Mutation p.E107G 0.18 tolerated(0.06) benign(0.015) TCGA-CC-A7IK-01 17 41582013 41582013 G A DHX8 Silent p.A516A 0.38 TCGA-CC-A7IK-01 17 42949889 42949889 C T EFTUD2 Missense_Mutation p.V307I 0.43 deleterious(0.03) possibly_damaging(0.858) TCGA-CC-A7IK-01 17 43228157 43228157 A G HEXIM1 3'UTR 0.38 TCGA-CC-A7IK-01 17 43910820 43910820 C A CRHR1 Silent p.I311I 0.23 TCGA-CC-A7IK-01 17 46024250 46024250 C T PNPO 3'UTR 0.26 TCGA-CC-A7IK-01 17 56343575 56343575 T - LPO Frame_Shift_Del p.N527Kfs*3 0.22 TCGA-CC-A7IK-01 17 56349142 56349142 C A MPO Missense_Mutation p.G635V 0.30 deleterious(0) probably_damaging(0.992) TCGA-CC-A7IK-01 17 56663388 56663388 A T TEX14 Silent p.P954P 0.44 TCGA-CC-A7IK-01 17 58499939 58499939 G A C17orf64 5'UTR 0.34 TCGA-CC-A7IK-01 17 61958465 61958465 T G GH2 Missense_Mutation p.Q72P 0.52 deleterious(0.03) possibly_damaging(0.587) TCGA-CC-A7IK-01 17 71166872 71166872 T A SSTR2 3'UTR 0.43 TCGA-CC-A7IK-01 17 71348683 71348683 T G SDK2 Missense_Mutation p.Y1896S 0.32 deleterious(0) probably_damaging(1) TCGA-CC-A7IK-01 17 76446801 76446801 T A DNAH17 Missense_Mutation p.E3607V 0.57 probably_damaging(0.977) TCGA-CC-A7IK-01 17 77090422 77090422 T C RBFOX3 Intron 0.50 TCGA-CC-A7IK-01 17 78313796 78313796 T G RNF213 Missense_Mutation p.L1877V 0.41 possibly_damaging(0.78) TCGA-CC-A7IK-01 17 9739777 9739777 C T GLP2R Missense_Mutation p.P123S 0.63 deleterious(0.02) probably_damaging(0.982) TCGA-CC-A7IK-01 18 47801768 47801768 C T MBD1 Intron 0.65 TCGA-CC-A7IK-01 18 76966943 76966943 A T ATP9B Missense_Mutation p.S321C 0.71 tolerated(0.07) benign(0.002) TCGA-CC-A7IK-01 18 77455996 77455996 A T CTDP1 Nonsense_Mutation p.K140* 0.38 TCGA-CC-A7IK-01 19 10602745 10602745 G A KEAP1 Missense_Mutation p.P278L 0.44 deleterious(0) probably_damaging(0.982) TCGA-CC-A7IK-01 19 10959175 10959175 G A C19orf38 5'UTR 0.15 TCGA-CC-A7IK-01 19 11545698 11545698 G T CCDC151 Missense_Mutation p.A47E 0.71 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-CC-A7IK-01 19 14294492 14294492 A G LPHN1 5'UTR 0.28 TCGA-CC-A7IK-01 19 15636153 15636153 G A CYP4F22 Silent p.L2L 0.24 TCGA-CC-A7IK-01 19 15917916 15917916 T G OR10H1 Missense_Mutation p.Y311S 0.16 tolerated(0.35) benign(0.001) TCGA-CC-A7IK-01 19 16634007 16634007 G A CHERP Silent p.F612F 0.59 TCGA-CC-A7IK-01 19 16973709 16973709 A C SIN3B Silent p.T427T 0.33 TCGA-CC-A7IK-01 19 1809732 1809732 T G ATP8B3 Silent p.A104A 0.13 TCGA-CC-A7IK-01 19 18186614 18186614 C A IL12RB1 Silent p.L215L 0.18 TCGA-CC-A7IK-01 19 22157397 22157397 G T ZNF208 Missense_Mutation p.R147S 0.30 tolerated(0.41) benign(0.013) TCGA-CC-A7IK-01 19 35551262 35551262 A T HPN Missense_Mutation p.R156W 0.22 deleterious(0) probably_damaging(0.996) TCGA-CC-A7IK-01 19 36393483 36393483 A T HCST 5'UTR 0.62 TCGA-CC-A7IK-01 19 36604924 36604924 C T POLR2I Missense_Mutation p.R103Q 0.29 deleterious(0.02) benign(0.221) TCGA-CC-A7IK-01 19 3918830 3918830 T C ATCAY Missense_Mutation p.L343P 0.59 tolerated_low_confidence(0.11) benign(0.001) TCGA-CC-A7IK-01 19 39416927 39416927 T G SARS2 Missense_Mutation p.Q94P 0.27 deleterious(0.01) probably_damaging(0.913) TCGA-CC-A7IK-01 19 40376756 40376756 C A FCGBP Missense_Mutation p.C3889F 0.39 possibly_damaging(0.639) TCGA-CC-A7IK-01 19 4280338 4280338 T A SHD Missense_Mutation p.L93Q 0.48 tolerated(0.13) possibly_damaging(0.653) TCGA-CC-A7IK-01 19 42853717 42853717 G T MEGF8 Missense_Mutation p.A722S 0.71 tolerated(0.73) benign(0.001) TCGA-CC-A7IK-01 19 42906917 42906917 C T LIPE Missense_Mutation p.V937I 0.10 tolerated(0.23) benign(0.015) TCGA-CC-A7IK-01 19 43576075 43576075 T C PSG2 Silent p.S247S 0.14 TCGA-CC-A7IK-01 19 4511838 4511838 T A PLIN4 Nonsense_Mutation p.K698* 0.37 TCGA-CC-A7IK-01 19 45480646 45480646 A G CLPTM1 Missense_Mutation p.K172R 0.19 tolerated(0.18) possibly_damaging(0.534) TCGA-CC-A7IK-01 19 45668133 45668133 T C TRAPPC6A Missense_Mutation p.D97G 0.21 deleterious(0.01) possibly_damaging(0.765) TCGA-CC-A7IK-01 19 45783689 45783689 A T MARK4 Missense_Mutation p.Q355L 0.08 deleterious(0.02) benign(0.013) TCGA-CC-A7IK-01 19 4844773 4844773 C A PLIN3 Missense_Mutation p.K289N 0.59 deleterious(0) probably_damaging(0.968) TCGA-CC-A7IK-01 19 48523032 48523032 A T ELSPBP1 Missense_Mutation p.N138Y 0.18 tolerated(0.1) benign(0.185) TCGA-CC-A7IK-01 19 48967700 48967700 T C KCNJ14 Missense_Mutation p.L326P 0.11 deleterious(0) probably_damaging(0.991) TCGA-CC-A7IK-01 19 50118152 50118152 A T PRR12 Missense_Mutation p.D1637V 0.21 unknown(0) TCGA-CC-A7IK-01 19 51630384 51630384 T A SIGLEC9 Silent p.P282P 0.23 TCGA-CC-A7IK-01 19 51830988 51830988 T A IGLON5 Missense_Mutation p.L257Q 0.24 deleterious(0) probably_damaging(0.995) TCGA-CC-A7IK-01 19 51918290 51918290 G T SIGLEC10 Missense_Mutation p.A468D 0.14 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IK-01 19 52785121 52785121 A G ZNF766 Intron 0.19 TCGA-CC-A7IK-01 19 53013987 53013987 A G ZNF578 Missense_Mutation p.Q118R 0.30 tolerated(1) probably_damaging(0.979) TCGA-CC-A7IK-01 19 53645692 53645692 G T ZNF347 Missense_Mutation p.S131Y 0.11 tolerated(1) benign(0.003) TCGA-CC-A7IK-01 19 54561741 54561741 A T VSTM1 Missense_Mutation p.F58L 0.12 deleterious(0.03) probably_damaging(0.942) TCGA-CC-A7IK-01 19 56206724 56206724 C G EPN1 3'UTR 0.25 TCGA-CC-A7IK-01 19 5843806 5843806 T A FUT3 Missense_Mutation p.R349W 0.62 deleterious(0.01) possibly_damaging(0.818) TCGA-CC-A7IK-01 19 6416517 6416517 A G KHSRP Missense_Mutation p.I491T 0.39 deleterious(0) probably_damaging(0.996) TCGA-CC-A7IK-01 19 9065588 9065588 A T MUC16 Silent p.S7286S 0.50 TCGA-CC-A7IK-01 19 9091940 9091940 T A MUC16 5'UTR 0.28 TCGA-CC-A7IK-01 1 102269846 102269846 A T OLFM3 Missense_Mutation p.V442E 0.38 deleterious(0) probably_damaging(0.998) TCGA-CC-A7IK-01 1 108742645 108742645 A T SLC25A24 Missense_Mutation p.V39E 0.59 deleterious(0) probably_damaging(0.953) TCGA-CC-A7IK-01 1 114240970 114240970 T A PHTF1 Missense_Mutation p.N728Y 0.27 deleterious(0) probably_damaging(0.95) TCGA-CC-A7IK-01 1 117142910 117142910 G C IGSF3 Missense_Mutation p.S581C 0.39 deleterious(0) probably_damaging(0.995) TCGA-CC-A7IK-01 1 12640383 12640383 T A DHRS3 Intron 0.20 TCGA-CC-A7IK-01 1 1290242 1290242 G T MXRA8 Missense_Mutation p.L257M 0.42 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IK-01 1 13839949 13839949 A G LRRC38 Missense_Mutation p.L47P 0.34 deleterious(0) probably_damaging(0.988) TCGA-CC-A7IK-01 1 14108238 14108238 A T PRDM2 Silent p.T1316T 0.46 TCGA-CC-A7IK-01 1 149898428 149898428 G A SF3B4 Silent p.S182S 0.18 TCGA-CC-A7IK-01 1 150266814 150266814 A T MRPS21 Missense_Mutation p.R10W 0.09 possibly_damaging(0.452) TCGA-CC-A7IK-01 1 150676627 150676627 T - HORMAD1 Frame_Shift_Del p.E306Kfs*15 0.14 TCGA-CC-A7IK-01 1 152284916 152284916 C G FLG Missense_Mutation p.V816L 0.25 possibly_damaging(0.451) TCGA-CC-A7IK-01 1 152284917 152284917 T A FLG Silent p.G815G 0.26 TCGA-CC-A7IK-01 1 152326656 152326656 G T FLG2 Silent p.S1202S 0.21 TCGA-CC-A7IK-01 1 152944448 152944448 C T SPRR4 Nonsense_Mutation p.Q28* 0.28 TCGA-CC-A7IK-01 1 154296109 154296109 G C AQP10 Silent p.L178L 0.15 TCGA-CC-A7IK-01 1 154569745 154569745 T C ADAR Splice_Site p.X645_splice 0.44 TCGA-CC-A7IK-01 1 160098468 160098468 C A ATP1A2 Silent p.R348R 0.20 TCGA-CC-A7IK-01 1 167659345 167659345 T A RCSD1 Silent p.I86I 0.34 TCGA-CC-A7IK-01 1 168054803 168054803 T G GPR161 Missense_Mutation p.E539A 0.48 deleterious_low_confidence(0.02) benign(0.003) TCGA-CC-A7IK-01 1 177250137 177250137 A C BRINP2 Missense_Mutation p.S609R 0.14 deleterious(0.02) benign(0.006) TCGA-CC-A7IK-01 1 197102525 197102525 T A ASPM Missense_Mutation p.R792W 0.36 deleterious(0) probably_damaging(0.938) TCGA-CC-A7IK-01 1 201196213 201196213 G T IGFN1 Missense_Mutation p.D3664Y 0.32 probably_damaging(0.999) TCGA-CC-A7IK-01 1 201757764 201757764 A G NAV1 Missense_Mutation p.D1055G 0.23 deleterious(0.02) benign(0.318) TCGA-CC-A7IK-01 1 202987649 202987649 A C TMEM183A Missense_Mutation p.Q250P 0.41 tolerated(0.35) benign(0.002) TCGA-CC-A7IK-01 1 203014634 203014634 G T PPFIA4 Missense_Mutation p.D269Y 0.29 deleterious(0) probably_damaging(0.984) TCGA-CC-A7IK-01 1 207649619 207649619 G T CR2 Silent p.G919G 0.54 TCGA-CC-A7IK-01 1 207649620 207649620 A C CR2 Missense_Mutation p.N920H 0.54 tolerated(0.56) possibly_damaging(0.789) TCGA-CC-A7IK-01 1 207812830 207812830 A G CR1 3'Flank 0.46 TCGA-CC-A7IK-01 1 212558622 212558622 C A TMEM206 Missense_Mutation p.Q224H 0.16 tolerated(0.18) benign(0.01) TCGA-CC-A7IK-01 1 214537999 214537999 C A PTPN14 Missense_Mutation p.Q1097H 0.15 deleterious(0) probably_damaging(0.931) TCGA-CC-A7IK-01 1 228550304 228550304 A C OBSCN Missense_Mutation p.E7187A 0.37 benign(0.008) TCGA-CC-A7IK-01 1 22895781 22895781 G A EPHA8 Splice_Site p.X32_splice 0.23 TCGA-CC-A7IK-01 1 23762387 23762387 T G ASAP3 Missense_Mutation p.N569T 0.18 deleterious(0) benign(0.066) TCGA-CC-A7IK-01 1 245850812 245850812 C A KIF26B Silent p.V1509V 0.55 TCGA-CC-A7IK-01 1 27720703 27720703 G C GPR3 Missense_Mutation p.R134P 0.41 deleterious(0) probably_damaging(1) TCGA-CC-A7IK-01 1 32265012 32265012 G T SPOCD1 Missense_Mutation p.L620I 0.46 deleterious(0.01) benign(0.247) TCGA-CC-A7IK-01 1 32950917 32950917 A C ZBTB8B Silent p.P462P 0.23 TCGA-CC-A7IK-01 1 3406923 3406923 A T MEGF6 3'UTR 0.26 TCGA-CC-A7IK-01 1 36439043 36439043 A T AGO3 Missense_Mutation p.R197W 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-CC-A7IK-01 1 36645935 36645935 A G MAP7D1 3'UTR 0.10 TCGA-CC-A7IK-01 1 38174246 38174246 T C CDCA8 3'UTR 0.44 TCGA-CC-A7IK-01 1 40882562 40882562 A G SMAP2 Missense_Mutation p.M320V 0.15 tolerated(0.62) benign(0.001) TCGA-CC-A7IK-01 1 43110399 43110399 A T CCDC30 Missense_Mutation p.Q604L 0.30 deleterious(0.03) benign(0.148) TCGA-CC-A7IK-01 1 43232755 43232755 T A LEPRE1 5'Flank 0.61 TCGA-CC-A7IK-01 1 44395833 44395833 A G ST3GAL3 Silent p.K425K 0.23 TCGA-CC-A7IK-01 1 53932266 53932266 A T DMRTB1 Splice_Site p.X321_splice 0.48 TCGA-CC-A7IK-01 1 54332055 54332055 T C YIPF1 Missense_Mutation p.I217V 0.43 tolerated(1) benign(0.005) TCGA-CC-A7IK-01 1 6206301 6206301 C T CHD5 Nonsense_Mutation p.W591* 0.23 TCGA-CC-A7IK-01 1 79411969 79411969 G T ELTD1 Silent p.T105T 0.42 TCGA-CC-A7IK-01 1 914384 914384 G A C1orf170 Missense_Mutation p.P582S 0.21 tolerated(0.16) benign(0.165) TCGA-CC-A7IK-01 1 94543350 94543350 T C ABCA4 Missense_Mutation p.K484E 0.28 tolerated(0.2) benign(0.001) TCGA-CC-A7IK-01 1 97271990 97271990 A G PTBP2 Missense_Mutation p.S354G 0.35 tolerated(0.62) probably_damaging(0.957) TCGA-CC-A7IK-01 20 139797 139797 T A DEFB127 3'UTR 0.48 TCGA-CC-A7IK-01 20 2987988 2987988 A T PTPRA Splice_Site p.X277_splice 0.19 TCGA-CC-A7IK-01 20 3674260 3674260 C A SIGLEC1 Silent p.P1114P 0.24 TCGA-CC-A7IK-01 20 44453043 44453043 T G TNNC2 Missense_Mutation p.S68R 0.59 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IK-01 20 45130957 45130957 T A ZNF334 Missense_Mutation p.R341W 0.30 deleterious(0.02) benign(0.141) TCGA-CC-A7IK-01 20 47296240 47296240 G A PREX1 Silent p.Y496Y 0.37 TCGA-CC-A7IK-01 20 50255968 50255968 T C ATP9A Missense_Mutation p.T528A 0.12 tolerated(0.26) benign(0.014) TCGA-CC-A7IK-01 20 60890246 60890246 T C LAMA5 Missense_Mutation p.I2629V 0.39 benign(0) TCGA-CC-A7IK-01 20 61512777 61512777 T C DIDO1 Missense_Mutation p.M1511V 0.13 probably_damaging(0.977) TCGA-CC-A7IK-01 20 61872621 61872621 T C NKAIN4 3'UTR 0.62 TCGA-CC-A7IK-01 20 62612637 62612637 G T PRPF6 Silent p.A13A 0.59 TCGA-CC-A7IK-01 20 62904996 62904996 A T PCMTD2 3'UTR 0.59 TCGA-CC-A7IK-01 20 9364907 9364907 T A PLCB4 Missense_Mutation p.F305I 0.28 deleterious(0.04) probably_damaging(0.983) TCGA-CC-A7IK-01 21 15537598 15537598 T A LIPI Missense_Mutation p.T304S 0.56 tolerated(0.25) benign(0.008) TCGA-CC-A7IK-01 21 15537634 15537634 T G LIPI Missense_Mutation p.I292L 0.61 tolerated(0.09) benign(0.097) TCGA-CC-A7IK-01 21 43646020 43646020 G T ABCG1 Missense_Mutation p.K94N 0.77 tolerated(0.07) benign(0.034) TCGA-CC-A7IK-01 22 50506909 50506909 T G MLC1 Missense_Mutation p.I283L 0.65 deleterious_low_confidence(0.01) benign(0.017) TCGA-CC-A7IK-01 2 100058804 100058804 T C REV1 Missense_Mutation p.I160V 0.25 tolerated(0.42) benign(0.002) TCGA-CC-A7IK-01 2 105914979 105914979 T G TGFBRAP1 Missense_Mutation p.Q291P 0.26 tolerated(0.14) possibly_damaging(0.699) TCGA-CC-A7IK-01 2 113180143 113180143 T C RGPD8 Silent p.K78K 0.17 TCGA-CC-A7IK-01 2 113742493 113742493 G T IL36G Missense_Mutation p.R126M 0.23 deleterious(0.01) probably_damaging(0.962) TCGA-CC-A7IK-01 2 133403400 133403400 C T LYPD1 3'UTR 0.85 TCGA-CC-A7IK-01 2 141459798 141459798 C A LRP1B Nonsense_Mutation p.G2072* 0.24 TCGA-CC-A7IK-01 2 152512686 152512686 A G NEB Missense_Mutation p.M2159T 0.19 probably_damaging(0.995) TCGA-CC-A7IK-01 2 169020389 169020389 A T STK39 Silent p.G144G 0.17 TCGA-CC-A7IK-01 2 178769916 178769916 T A PDE11A Splice_Site p.X358_splice 0.26 TCGA-CC-A7IK-01 2 179642164 179642164 A T TTN Missense_Mutation p.V1543E 0.66 TCGA-CC-A7IK-01 2 191362167 191362167 A G MFSD6 Missense_Mutation p.K632E 0.23 tolerated(0.78) benign(0.166) TCGA-CC-A7IK-01 2 218925041 218925041 A T CXCR2P1 RNA 0.42 TCGA-CC-A7IK-01 2 222301134 222301134 T A EPHA4 Silent p.A777A 0.24 TCGA-CC-A7IK-01 2 235951205 235951205 G T SH3BP4 Nonsense_Mutation p.E598* 0.73 TCGA-CC-A7IK-01 2 242380934 242380934 C A FARP2 Silent p.A458A 0.54 TCGA-CC-A7IK-01 2 27455440 27455440 A G CAD Missense_Mutation p.T924A 0.49 tolerated(0.39) benign(0.001) TCGA-CC-A7IK-01 2 32314626 32314626 A G SPAST Missense_Mutation p.K180E 0.24 deleterious(0) possibly_damaging(0.825) TCGA-CC-A7IK-01 2 5839722 5839722 A C SOX11 3'UTR 0.24 TCGA-CC-A7IK-01 2 9628570 9628570 A G IAH1 3'UTR 0.56 TCGA-CC-A7IK-01 2 98429012 98429012 T C TMEM131 Missense_Mutation p.I579V 0.21 tolerated(0.18) benign(0.014) TCGA-CC-A7IK-01 2 99449345 99449345 C A KIAA1211L Missense_Mutation p.D119Y 0.19 deleterious(0) probably_damaging(0.934) TCGA-CC-A7IK-01 3 100948247 100948247 C A IMPG2 Nonsense_Mutation p.E1204* 0.12 TCGA-CC-A7IK-01 3 100976471 100976471 C A IMPG2 Missense_Mutation p.S352I 0.65 deleterious(0) probably_damaging(0.914) TCGA-CC-A7IK-01 3 10382000 10382000 T A ATP2B2 Missense_Mutation p.S1055C 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-CC-A7IK-01 3 112185077 112185077 C A BTLA Nonsense_Mutation p.E250* 0.27 TCGA-CC-A7IK-01 3 112736436 112736436 T A C3orf17 Silent p.A40A 0.44 TCGA-CC-A7IK-01 3 113004363 113004363 C T BOC Silent p.A1036A 0.62 TCGA-CC-A7IK-01 3 113187199 113187199 T C SPICE1 Silent p.S314S 0.23 TCGA-CC-A7IK-01 3 140281142 140281142 C A CLSTN2 Missense_Mutation p.S735Y 0.56 deleterious(0.02) benign(0.106) TCGA-CC-A7IK-01 3 184298848 184298848 T G EPHB3 Missense_Mutation p.V876G 0.07 deleterious(0) possibly_damaging(0.568) TCGA-CC-A7IK-01 3 195507996 195507996 G T MUC4 Missense_Mutation p.H3485Q 0.13 benign(0.234) TCGA-CC-A7IK-01 3 195509863 195509863 G T MUC4 Missense_Mutation p.T2863N 0.06 possibly_damaging(0.623) TCGA-CC-A7IK-01 3 195510007 195510007 G T MUC4 Missense_Mutation p.T2815N 0.05 benign(0.015) TCGA-CC-A7IK-01 3 195515685 195515685 G T MUC4 Silent p.I922I 0.25 TCGA-CC-A7IK-01 3 21792575 21792575 G C ZNF385D 5'UTR 0.13 TCGA-CC-A7IK-01 3 33441756 33441756 T C UBP1 Missense_Mutation p.T369A 0.10 deleterious(0) benign(0.15) TCGA-CC-A7IK-01 3 36484900 36484900 A T STAC Missense_Mutation p.L52F 0.21 deleterious(0.01) possibly_damaging(0.86) TCGA-CC-A7IK-01 3 41266098 41266098 A T CTNNB1 Missense_Mutation p.D32V 0.21 deleterious(0) probably_damaging(0.988) TCGA-CC-A7IK-01 3 44544473 44544473 C T ZNF852 5'UTR 0.17 TCGA-CC-A7IK-01 3 45187699 45187699 T A CDCP1 Silent p.A27A 0.18 TCGA-CC-A7IK-01 3 48455150 48455150 T A PLXNB1 Silent p.A1488A 0.19 TCGA-CC-A7IK-01 3 48689876 48689876 G T CELSR3 Nonsense_Mutation p.C1915* 0.13 TCGA-CC-A7IK-01 3 49095208 49095208 T A QRICH1 Missense_Mutation p.Q142L 0.24 tolerated_low_confidence(0.06) benign(0.069) TCGA-CC-A7IK-01 3 49149350 49149350 T A USP19 Missense_Mutation p.Y964F 0.28 tolerated(0.14) benign(0.159) TCGA-CC-A7IK-01 3 49166551 49166551 G C LAMB2 Missense_Mutation p.Q545E 0.47 tolerated(0.72) benign(0.155) TCGA-CC-A7IK-01 3 49698355 49698355 C G BSN Missense_Mutation p.T3026S 0.30 unknown(0) TCGA-CC-A7IK-01 3 49832413 49832413 A T CDHR4 Silent p.P384P 0.25 TCGA-CC-A7IK-01 3 54952542 54952542 T C LRTM1 Missense_Mutation p.T328A 0.26 tolerated(0.98) benign(0.002) TCGA-CC-A7IK-01 3 57394214 57394214 C A DNAH12 Silent p.L2004L 0.58 TCGA-CC-A7IK-01 3 70008478 70008478 A G MITF Silent p.R356R 0.15 TCGA-CC-A7IK-01 3 71821732 71821732 A G PROK2 3'UTR 0.25 TCGA-CC-A7IK-01 3 77666666 77666666 A G ROBO2 Missense_Mutation p.Y1115C 0.71 tolerated(0.13) possibly_damaging(0.759) TCGA-CC-A7IK-01 4 123185451 123185451 A C KIAA1109 Missense_Mutation p.N2396H 0.28 probably_damaging(0.959) TCGA-CC-A7IK-01 4 13616094 13616094 T C BOD1L1 Silent p.L300L 0.61 TCGA-CC-A7IK-01 4 155507589 155507589 G T FGA Missense_Mutation p.T331N 0.20 tolerated_low_confidence(0.13) benign(0.016) TCGA-CC-A7IK-01 4 175413048 175413048 T C HPGD 3'UTR 0.22 TCGA-CC-A7IK-01 4 186361844 186361844 A G C4orf47 Missense_Mutation p.T229A 0.57 tolerated(0.07) benign(0.001) TCGA-CC-A7IK-01 4 39313096 39313096 T C RFC1 Missense_Mutation p.K486R 0.18 tolerated(0.12) benign(0.01) TCGA-CC-A7IK-01 4 46967019 46967019 G A GABRA4 Nonsense_Mutation p.Q368* 0.23 TCGA-CC-A7IK-01 4 52943036 52943036 A T SPATA18 Missense_Mutation p.R284W 0.52 tolerated(0.06) possibly_damaging(0.753) TCGA-CC-A7IK-01 4 6058425 6058425 T A JAKMIP1 Missense_Mutation p.K569M 0.45 deleterious(0) probably_damaging(0.98) TCGA-CC-A7IK-01 4 6288867 6288867 A T WFS1 Missense_Mutation p.R94W 0.52 deleterious(0) possibly_damaging(0.833) TCGA-CC-A7IK-01 4 70620914 70620914 G A SULT1B1 Silent p.L8L 0.51 TCGA-CC-A7IK-01 4 77818168 77818168 G A SOWAHB Missense_Mutation p.P279S 0.62 tolerated(0.09) possibly_damaging(0.641) TCGA-CC-A7IK-01 4 83793196 83793196 T G SEC31A Missense_Mutation p.Q228P 0.37 deleterious(0) possibly_damaging(0.756) TCGA-CC-A7IK-01 4 83838969 83838969 T A THAP9 Missense_Mutation p.L535Q 0.50 deleterious(0) probably_damaging(0.994) TCGA-CC-A7IK-01 4 85623579 85623579 T G WDFY3 Silent p.A2841A 0.51 TCGA-CC-A7IK-01 5 101631729 101631729 G C SLCO4C1 Missense_Mutation p.L80V 0.28 tolerated(0.64) benign(0.005) TCGA-CC-A7IK-01 5 1036382 1036382 A T NKD2 Missense_Mutation p.T224S 0.47 tolerated(0.97) benign(0.004) TCGA-CC-A7IK-01 5 109049407 109049407 T G MAN2A1 Missense_Mutation p.S108A 0.27 tolerated(0.58) benign(0.003) TCGA-CC-A7IK-01 5 112849665 112849665 T C YTHDC2 Missense_Mutation p.C25R 0.27 tolerated_low_confidence(0.15) benign(0.001) TCGA-CC-A7IK-01 5 118513717 118513717 A T DMXL1 Missense_Mutation p.N2305Y 0.16 deleterious(0.02) probably_damaging(0.95) TCGA-CC-A7IK-01 5 127484507 127484507 A G SLC12A2 Missense_Mutation p.N648S 0.12 deleterious(0.04) possibly_damaging(0.62) TCGA-CC-A7IK-01 5 131552947 131552947 G A P4HA2 Missense_Mutation p.R92W 0.39 deleterious(0) probably_damaging(1) TCGA-CC-A7IK-01 5 135496605 135496605 T G SMAD5 Missense_Mutation p.V155G 0.57 tolerated(0.11) benign(0.026) TCGA-CC-A7IK-01 5 137354837 137354837 T C FAM13B Splice_Site 0.42 TCGA-CC-A7IK-01 5 140432008 140432008 A G PCDHB1 Missense_Mutation p.D318G 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-CC-A7IK-01 5 140558117 140558117 A G PCDHB8 Missense_Mutation p.I168V 0.21 tolerated_low_confidence(0.78) benign(0.005) TCGA-CC-A7IK-01 5 147030071 147030071 G A JAKMIP2 Silent p.L223L 0.35 TCGA-CC-A7IK-01 5 150678223 150678223 G T SLC36A3 Missense_Mutation p.H50Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IK-01 5 151045983 151045983 T A SPARC Missense_Mutation p.N225Y 0.51 tolerated(0.21) probably_damaging(0.999) TCGA-CC-A7IK-01 5 153413430 153413430 T C FAM114A2 Silent p.S108S 0.27 TCGA-CC-A7IK-01 5 175112731 175112731 T G HRH2 3'UTR 0.45 TCGA-CC-A7IK-01 5 32791479 32791479 A G NPR3 3'UTR 0.37 TCGA-CC-A7IK-01 5 40763061 40763061 T C PRKAA1 Missense_Mutation p.Y515C 0.28 tolerated_low_confidence(0.17) benign(0.003) TCGA-CC-A7IK-01 5 56777344 56777344 A G ACTBL2 3'UTR 0.52 TCGA-CC-A7IK-01 5 64023956 64023956 T A SREK1IP1 Nonsense_Mutation p.K86* 0.26 TCGA-CC-A7IK-01 5 68715680 68715680 G A MARVELD2 Silent p.R156R 0.36 TCGA-CC-A7IK-01 5 95236690 95236690 T C ELL2 Missense_Mutation p.D279G 0.44 deleterious(0) probably_damaging(0.995) TCGA-CC-A7IK-01 6 109766714 109766714 T A MICAL1 Nonsense_Mutation p.K898* 0.38 TCGA-CC-A7IK-01 6 110081565 110081565 A T FIG4 Missense_Mutation p.D417V 0.24 deleterious(0) probably_damaging(0.99) TCGA-CC-A7IK-01 6 111280446 111280446 C A GTF3C6 Nonsense_Mutation p.C43* 0.09 TCGA-CC-A7IK-01 6 111696479 111696479 C A REV3L Missense_Mutation p.V1027F 0.22 deleterious(0) probably_damaging(0.997) TCGA-CC-A7IK-01 6 116757490 116757490 A G DSE Missense_Mutation p.D620G 0.23 deleterious(0.04) probably_damaging(0.998) TCGA-CC-A7IK-01 6 130415451 130415451 T C L3MBTL3 Missense_Mutation p.S559P 0.13 tolerated(1) benign(0) TCGA-CC-A7IK-01 6 143090697 143090697 A G HIVEP2 Missense_Mutation p.F1727L 0.73 tolerated(0.18) benign(0.005) TCGA-CC-A7IK-01 6 147067116 147067116 G A ADGB Missense_Mutation p.R1079Q 0.16 tolerated(0.11) benign(0.043) TCGA-CC-A7IK-01 6 147123993 147123993 C G ADGB Intron 0.14 TCGA-CC-A7IK-01 6 147124002 147124002 G T ADGB Intron 0.14 TCGA-CC-A7IK-01 6 152652650 152652650 G A SYNE1 Silent p.I4390I 0.68 TCGA-CC-A7IK-01 6 15501254 15501254 A G JARID2 Missense_Mutation p.R688G 0.11 deleterious(0) benign(0.016) TCGA-CC-A7IK-01 6 155776020 155776020 G A NOX3 Silent p.C60C 0.34 TCGA-CC-A7IK-01 6 159650876 159650876 A C FNDC1 Missense_Mutation p.K404Q 0.28 deleterious(0) unknown(0) TCGA-CC-A7IK-01 6 166581103 166581103 G A T 5'UTR 0.19 TCGA-CC-A7IK-01 6 168352222 168352222 A T MLLT4 Silent p.P1389P 0.09 TCGA-CC-A7IK-01 6 27839739 27839739 T G HIST1H3I Missense_Mutation p.T119P 0.39 deleterious_low_confidence(0.01) benign(0.302) TCGA-CC-A7IK-01 6 27879561 27879561 A G OR2B2 Silent p.C179C 0.36 TCGA-CC-A7IK-01 6 28876789 28876789 T A TRIM27 Nonsense_Mutation p.K283* 0.22 TCGA-CC-A7IK-01 6 28963167 28963167 C A ZNF311 Missense_Mutation p.G538W 0.10 tolerated(0.06) probably_damaging(0.922) TCGA-CC-A7IK-01 6 29342442 29342442 G - OR12D3 Frame_Shift_Del p.A208Vfs*4 0.19 TCGA-CC-A7IK-01 6 32085719 32085719 T A ATF6B Silent p.P447P 0.30 TCGA-CC-A7IK-01 6 32163815 32163815 G A NOTCH4 Missense_Mutation p.A1804V 0.65 tolerated(0.07) benign(0.075) TCGA-CC-A7IK-01 6 41754595 41754596 - GC PRICKLE4 Frame_Shift_Ins p.L296Afs*61 0.31 TCGA-CC-A7IK-01 6 46424645 46424645 T C RCAN2 Silent p.G23G 0.18 TCGA-CC-A7IK-01 6 46828555 46828555 G A GPR116 Missense_Mutation p.A759V 0.45 tolerated(0.35) benign(0.001) TCGA-CC-A7IK-01 6 49937328 49937328 A C DEFB113 Missense_Mutation p.L4R 0.08 deleterious_low_confidence(0) possibly_damaging(0.488) TCGA-CC-A7IK-01 6 70092727 70092727 T C BAI3 Missense_Mutation p.V1427A 0.35 deleterious(0) possibly_damaging(0.901) TCGA-CC-A7IK-01 6 71289154 71289154 T G C6orf57 Missense_Mutation p.S34R 0.29 tolerated(0.09) benign(0.168) TCGA-CC-A7IK-01 6 74407156 74407156 C T CD109 Silent p.I36I 0.31 TCGA-CC-A7IK-01 6 78172967 78172967 G T HTR1B Missense_Mutation p.L52M 0.63 deleterious(0) possibly_damaging(0.499) TCGA-CC-A7IK-01 6 83862023 83862023 A G DOPEY1 Silent p.A2022A 0.33 TCGA-CC-A7IK-01 6 83862028 83862028 A C DOPEY1 Missense_Mutation p.E2024A 0.35 tolerated(0.8) benign(0.138) TCGA-CC-A7IK-01 6 96651917 96651917 A T FUT9 Missense_Mutation p.S296C 0.15 deleterious(0) possibly_damaging(0.656) TCGA-CC-A7IK-01 6 96657735 96657735 A T FUT9 3'UTR 0.13 TCGA-CC-A7IK-01 7 112412840 112412840 T A TMEM168 Silent p.L514L 0.27 TCGA-CC-A7IK-01 7 121653534 121653534 T A PTPRZ1 Silent p.S1478S 0.38 TCGA-CC-A7IK-01 7 127222729 127222729 A T GCC1 Missense_Mutation p.L556Q 0.16 tolerated(0.12) benign(0.01) TCGA-CC-A7IK-01 7 136700208 136700208 T C CHRM2 Missense_Mutation p.V199A 0.49 deleterious(0.03) possibly_damaging(0.669) TCGA-CC-A7IK-01 7 137776523 137776523 A G AKR1D1 Missense_Mutation p.T91A 0.17 deleterious(0) possibly_damaging(0.898) TCGA-CC-A7IK-01 7 143021573 143021573 A G CLCN1 Missense_Mutation p.T281A 0.29 tolerated(1) benign(0.075) TCGA-CC-A7IK-01 7 150164267 150164267 T A GIMAP8 Missense_Mutation p.Y161N 0.23 tolerated(0.19) benign(0.001) TCGA-CC-A7IK-01 7 151810421 151810421 G C GALNT11 Missense_Mutation p.G391R 0.13 tolerated(0.09) probably_damaging(0.993) TCGA-CC-A7IK-01 7 152133039 152133039 T C KMT2C 5'UTR 0.30 TCGA-CC-A7IK-01 7 155187808 155187808 A G AC008060.7 Missense_Mutation p.D87G 0.43 possibly_damaging(0.737) TCGA-CC-A7IK-01 7 23766879 23766879 C T STK31 Missense_Mutation p.S90F 0.47 deleterious(0.05) probably_damaging(0.997) TCGA-CC-A7IK-01 7 2565185 2565185 T A LFNG Missense_Mutation p.V240D 0.31 deleterious(0.03) benign(0.038) TCGA-CC-A7IK-01 7 27224509 27224509 C A HOXA11 Silent p.A85A 0.50 TCGA-CC-A7IK-01 7 4308564 4308564 C A SDK1 3'UTR 0.38 TCGA-CC-A7IK-01 7 43647961 43647961 T G STK17A Missense_Mutation p.F176V 0.43 deleterious(0.01) possibly_damaging(0.686) TCGA-CC-A7IK-01 7 43927483 43927483 T A URGCP Intron 0.36 TCGA-CC-A7IK-01 7 47870917 47870917 T C PKD1L1 Missense_Mutation p.Q2124R 0.37 tolerated(1) benign(0) TCGA-CC-A7IK-01 7 4801902 4801902 A T FOXK1 Missense_Mutation p.K670M 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.641) TCGA-CC-A7IK-01 7 50514059 50514060 - T FIGNL1 Frame_Shift_Ins p.Y310Vfs*22 0.25 TCGA-CC-A7IK-01 7 5643005 5643005 T A FSCN1 Missense_Mutation p.L317Q 0.17 deleterious(0) probably_damaging(0.959) TCGA-CC-A7IK-01 7 64388967 64388967 A G ZNF273 Missense_Mutation p.K421E 0.15 deleterious(0.04) possibly_damaging(0.67) TCGA-CC-A7IK-01 7 99272195 99272195 A C CYP3A5 Missense_Mutation p.F60C 0.50 deleterious(0) possibly_damaging(0.895) TCGA-CC-A7IK-01 7 99569527 99569527 C A AZGP1 Missense_Mutation p.R60I 0.21 deleterious(0.01) benign(0.076) TCGA-CC-A7IK-01 8 11660200 11660200 C A FDFT1 5'UTR 0.38 TCGA-CC-A7IK-01 8 131797638 131797638 A T ADCY8 Silent p.P1048P 0.09 TCGA-CC-A7IK-01 8 131848557 131848557 A G ADCY8 Missense_Mutation p.F881L 0.36 tolerated(0.1) benign(0.041) TCGA-CC-A7IK-01 8 133935748 133935748 G C TG Missense_Mutation p.C1565S 0.26 deleterious(0) probably_damaging(0.974) TCGA-CC-A7IK-01 8 134225330 134225330 G T WISP1 Missense_Mutation p.G98V 0.16 deleterious(0) probably_damaging(1) TCGA-CC-A7IK-01 8 141889628 141889628 T C PTK2 Missense_Mutation p.M102V 0.46 tolerated(0.23) benign(0.007) TCGA-CC-A7IK-01 8 144332183 144332183 A T ZFP41 Missense_Mutation p.E57V 0.08 deleterious(0.01) benign(0.301) TCGA-CC-A7IK-01 8 145001890 145001890 G A PLEC Silent p.A1285A 0.19 TCGA-CC-A7IK-01 8 145758592 145758592 C T ARHGAP39 Missense_Mutation p.E936K 0.40 tolerated(0.07) benign(0.017) TCGA-CC-A7IK-01 8 145806392 145806392 C T ARHGAP39 Missense_Mutation p.R117H 0.41 tolerated(0.07) probably_damaging(0.977) TCGA-CC-A7IK-01 8 146115758 146115758 A G ZNF250 5'UTR 0.18 TCGA-CC-A7IK-01 8 24254913 24254913 A G ADAMDEC1 Missense_Mutation p.S191G 0.38 tolerated(0.1) benign(0.035) TCGA-CC-A7IK-01 8 27293843 27293843 A G PTK2B Missense_Mutation p.Y440C 0.12 deleterious(0) probably_damaging(0.975) TCGA-CC-A7IK-01 8 27472188 27472188 G C CLU 5'UTR 0.16 TCGA-CC-A7IK-01 8 31030877 31030877 A T WRN 3'UTR 0.33 TCGA-CC-A7IK-01 8 31498128 31498128 G A NRG1 Missense_Mutation p.E63K 0.51 deleterious(0.01) benign(0.114) TCGA-CC-A7IK-01 8 39018462 39018462 A G ADAM32 Missense_Mutation p.H191R 0.39 deleterious(0) possibly_damaging(0.903) TCGA-CC-A7IK-01 8 41469773 41469773 G A AGPAT6 Missense_Mutation p.S259N 0.38 tolerated(0.84) possibly_damaging(0.654) TCGA-CC-A7IK-01 8 49986888 49986888 A G C8orf22 Missense_Mutation p.T77A 0.27 deleterious(0.02) benign(0.01) TCGA-CC-A7IK-01 8 68107738 68107738 C T CSPP1 Silent p.F1192F 0.52 TCGA-CC-A7IK-01 8 71036125 71036125 G A NCOA2 Silent p.P1429P 0.28 TCGA-CC-A7IK-01 8 72229893 72229893 A T EYA1 Silent p.G150G 0.40 TCGA-CC-A7IK-01 8 82572837 82572837 T C IMPA1 Missense_Mutation p.Y270C 0.12 deleterious(0.03) probably_damaging(0.982) TCGA-CC-A7IK-01 8 86250479 86250479 A T CA1 Splice_Site p.X79_splice 0.14 TCGA-CC-A7IK-01 9 107533137 107533137 T A NIPSNAP3B Nonsense_Mutation p.Y146* 0.35 TCGA-CC-A7IK-01 9 127920663 127920663 T A PPP6C Splice_Site p.X117_splice 0.07 TCGA-CC-A7IK-01 9 129458665 129458665 C A LMX1B Missense_Mutation p.Q386K 0.33 deleterious(0.03) possibly_damaging(0.637) TCGA-CC-A7IK-01 9 138642869 138642869 C A KCNT1 Missense_Mutation p.P139Q 0.38 deleterious(0.05) benign(0.43) TCGA-CC-A7IK-01 9 139740383 139740383 T C C9orf172 Missense_Mutation p.L506P 0.49 deleterious(0) probably_damaging(1) TCGA-CC-A7IK-01 9 33271184 33271184 A G CHMP5 Missense_Mutation p.K117R 0.50 tolerated(0.18) probably_damaging(0.912) TCGA-CC-A7IK-01 9 37541574 37541574 T C FBXO10 Silent p.P64P 0.28 TCGA-CC-A7IK-01 9 75431065 75431065 T G TMC1 Missense_Mutation p.Y568D 0.12 deleterious(0) probably_damaging(0.995) TCGA-CC-A7IK-01 9 95148565 95148565 A T OGN Missense_Mutation p.L215H 0.43 deleterious(0) probably_damaging(0.996) TCGA-CC-A7IK-01 X 100871178 100871178 C A ARMCX6 Missense_Mutation p.A145S 0.80 deleterious(0.02) benign(0.321) TCGA-CC-A7IK-01 X 114244204 114244204 A G IL13RA2 Silent p.L244L 0.36 TCGA-CC-A7IK-01 X 134986663 134986663 A T SAGE1 Missense_Mutation p.E83V 0.36 deleterious(0.02) probably_damaging(0.997) TCGA-CC-A7IK-01 X 140996543 140996543 T C MAGEC1 Missense_Mutation p.I1118T 0.86 deleterious(0.02) unknown(0) TCGA-CC-A7IK-01 X 3240280 3240280 C A MXRA5 Missense_Mutation p.R1149M 0.81 deleterious(0) possibly_damaging(0.87) TCGA-CC-A7IK-01 X 32481605 32481605 T A DMD Missense_Mutation p.E1128V 0.42 possibly_damaging(0.805) TCGA-CC-A7IK-01 X 36403105 36403105 T C CXorf30 Missense_Mutation p.L629S 0.84 deleterious(0) probably_damaging(0.943) TCGA-CC-A7IK-01 X 48433627 48433627 A T RBM3 Missense_Mutation p.Q20L 0.46 deleterious(0) possibly_damaging(0.9) TCGA-CC-A7IK-01 X 49958228 49958228 A G AKAP4 Missense_Mutation p.V379A 0.38 deleterious(0) possibly_damaging(0.669) TCGA-CC-A7IK-01 X 54783989 54783989 G C ITIH6 Missense_Mutation p.L840V 0.85 deleterious(0.04) benign(0) TCGA-CC-A7IK-01 X 72434625 72434625 C A NAP1L2 5'UTR 0.90 TCGA-CC-A7IK-01 X 73812676 73812676 T C RLIM Silent p.P158P 0.90 TCGA-CC-A7IK-01 X 83128470 83128470 G T CYLC1 Nonsense_Mutation p.G252* 0.89 TCGA-CC-A7IK-01 X 83352788 83352788 C T RPS6KA6 Missense_Mutation p.M615I 0.84 deleterious(0.02) possibly_damaging(0.855) TCGA-CC-A7IK-01 X 8503725 8503725 A T KAL1 Silent p.T583T 0.39 TCGA-CC-A7IL-01 10 103589645 103589645 G T KCNIP2 Missense_Mutation p.A75D 0.43 tolerated_low_confidence(0.38) benign(0.04) TCGA-CC-A7IL-01 10 105104793 105104793 A G PCGF6 Missense_Mutation p.L257P 0.31 deleterious(0.01) possibly_damaging(0.902) TCGA-CC-A7IL-01 10 121590805 121590805 A G MCMBP 3'UTR 0.26 TCGA-CC-A7IL-01 10 124335940 124335940 G T DMBT1 Missense_Mutation p.R103S 0.36 deleterious(0) probably_damaging(0.993) TCGA-CC-A7IL-01 10 126714944 126714944 G A CTBP2 Missense_Mutation p.A462V 0.62 deleterious_low_confidence(0.04) benign(0.025) TCGA-CC-A7IL-01 10 48372823 48372823 A T ZNF488 3'UTR 0.66 TCGA-CC-A7IL-01 10 72015502 72015502 C A NPFFR1 Silent p.L168L 0.34 TCGA-CC-A7IL-01 10 72360312 72360312 G T PRF1 Missense_Mutation p.A116D 0.32 tolerated(0.33) benign(0.005) TCGA-CC-A7IL-01 11 106810594 106810594 C A GUCY1A2 Silent p.V266V 0.69 TCGA-CC-A7IL-01 11 12183718 12183718 G T MICAL2 Missense_Mutation p.D6Y 0.71 deleterious(0) possibly_damaging(0.839) TCGA-CC-A7IL-01 11 123600474 123600474 C A ZNF202 Silent p.V154V 0.21 TCGA-CC-A7IL-01 11 70666634 70666634 C A SHANK2 Missense_Mutation p.R444L 0.31 tolerated(0.05) benign(0.133) TCGA-CC-A7IL-01 12 20807109 20807109 G A PDE3A Missense_Mutation p.E1052K 0.45 tolerated(0.07) benign(0.199) TCGA-CC-A7IL-01 12 44902472 44902472 C T NELL2 3'UTR 0.40 TCGA-CC-A7IL-01 12 4848403 4848403 C G GALNT8 Missense_Mutation p.S195C 0.48 deleterious(0) probably_damaging(0.995) TCGA-CC-A7IL-01 12 49359734 49359734 C A WNT10B 3'UTR 0.44 TCGA-CC-A7IL-01 12 54423561 54423561 G T HOXC6 Missense_Mutation p.A175S 0.49 tolerated(0.08) probably_damaging(0.999) TCGA-CC-A7IL-01 12 57971812 57971812 C A KIF5A Silent p.L794L 0.38 TCGA-CC-A7IL-01 12 59284530 59284539 AAACTCTTTC - LRIG3 Frame_Shift_Del p.K142Sfs*53 0.30 TCGA-CC-A7IL-01 12 8988264 8988264 T C A2ML1 Splice_Site p.X215_splice 0.40 TCGA-CC-A7IL-01 13 37446983 37446983 C A SMAD9 Missense_Mutation p.R161L 0.36 tolerated(0.21) benign(0.235) TCGA-CC-A7IL-01 13 72049330 72049330 G T DACH1 Missense_Mutation p.P678T 0.43 probably_damaging(0.944) TCGA-CC-A7IL-01 14 23456717 23456717 C T C14orf93 Missense_Mutation p.A442T 0.66 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-CC-A7IL-01 14 35871694 35871694 T A NFKBIA Missense_Mutation p.Q271L 0.37 tolerated(0.08) benign(0) TCGA-CC-A7IL-01 14 45693923 45693923 T C MIS18BP1 Missense_Mutation p.I623V 0.22 tolerated(0.55) benign(0.006) TCGA-CC-A7IL-01 14 63174666 63174666 C A KCNH5 Missense_Mutation p.D843Y 0.58 deleterious_low_confidence(0.03) possibly_damaging(0.459) TCGA-CC-A7IL-01 14 63174667 63174667 C G KCNH5 Missense_Mutation p.E842D 0.57 tolerated_low_confidence(0.43) benign(0) TCGA-CC-A7IL-01 14 68053656 68053656 T C PLEKHH1 Intron 0.26 TCGA-CC-A7IL-01 14 68273376 68273376 T C ZFYVE26 Silent p.L301L 0.61 TCGA-CC-A7IL-01 14 75601400 75601400 G C TMED10 3'UTR 0.45 TCGA-CC-A7IL-01 14 92472209 92472209 G T TRIP11 Missense_Mutation p.S704Y 0.36 tolerated(0.33) probably_damaging(0.931) TCGA-CC-A7IL-01 14 93673574 93673574 C A UBR7 5'UTR 0.29 TCGA-CC-A7IL-01 15 23889234 23889234 G A MAGEL2 Missense_Mutation p.A616V 0.53 deleterious(0) possibly_damaging(0.902) TCGA-CC-A7IL-01 15 41060161 41060161 C T DNAJC17 Missense_Mutation p.D298N 0.75 deleterious(0) possibly_damaging(0.887) TCGA-CC-A7IL-01 15 48888574 48888574 A G FBN1 Silent p.P148P 0.20 TCGA-CC-A7IL-01 15 81637267 81637267 C G TMC3 Missense_Mutation p.W453S 0.08 tolerated(0.07) benign(0.04) TCGA-CC-A7IL-01 15 98982733 98982733 C T FAM169B 3'UTR 0.28 TCGA-CC-A7IL-01 16 19049311 19049311 G A TMC7 Missense_Mutation p.G374E 0.32 deleterious(0.04) benign(0.082) TCGA-CC-A7IL-01 16 22149725 22149725 A G VWA3A Silent p.V728V 0.60 TCGA-CC-A7IL-01 16 23226546 23226546 C A SCNN1G Missense_Mutation p.A569D 0.67 tolerated(0.13) possibly_damaging(0.453) TCGA-CC-A7IL-01 16 30792906 30792906 T C ZNF629 3'UTR 0.40 TCGA-CC-A7IL-01 16 56396835 56396835 G A AMFR Nonsense_Mutation p.Q640* 0.17 TCGA-CC-A7IL-01 16 66976621 66976621 G A CES2 Silent p.P515P 0.33 TCGA-CC-A7IL-01 16 67650677 67650677 G T CTCF Missense_Mutation p.D328Y 0.27 deleterious(0) possibly_damaging(0.692) TCGA-CC-A7IL-01 16 71482852 71482852 G C ZNF23 Missense_Mutation p.T359R 0.36 deleterious(0) probably_damaging(0.989) TCGA-CC-A7IL-01 16 84884214 84884214 A G CRISPLD2 Missense_Mutation p.N178S 0.23 tolerated(0.06) possibly_damaging(0.595) TCGA-CC-A7IL-01 16 9934503 9934503 C A GRIN2A Splice_Site p.X551_splice 0.29 TCGA-CC-A7IL-01 17 3336194 3336194 A T OR1E2 Silent p.I314I 0.09 TCGA-CC-A7IL-01 17 39240735 39240735 A C KRTAP4-7 Missense_Mutation p.S93R 0.85 deleterious(0.01) unknown(0) TCGA-CC-A7IL-01 17 80010109 80010109 G T GPS1 5'UTR 0.83 TCGA-CC-A7IL-01 19 11553327 11553327 G A PRKCSH Missense_Mutation p.E199K 0.39 deleterious(0.05) probably_damaging(0.999) TCGA-CC-A7IL-01 19 15918704 15918704 G A OR10H1 Silent p.T48T 0.38 TCGA-CC-A7IL-01 19 22848348 22848348 T G ZNF492 3'UTR 0.50 TCGA-CC-A7IL-01 19 32845521 32845524 AGAA - ZNF507 Frame_Shift_Del p.E596Gfs*12 0.53 TCGA-CC-A7IL-01 19 34895344 34895344 C G PDCD2L Silent p.A3A 0.41 TCGA-CC-A7IL-01 19 38028629 38028629 C T ZNF793 Missense_Mutation p.H357Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IL-01 19 40433334 40433334 C A FCGBP Missense_Mutation p.G312V 0.38 possibly_damaging(0.84) TCGA-CC-A7IL-01 19 45810804 45810804 G T CKM Silent p.G294G 0.35 TCGA-CC-A7IL-01 19 46916714 46916714 C T CCDC8 5'UTR 0.46 TCGA-CC-A7IL-01 19 49962955 49962955 C T ALDH16A1 Missense_Mutation p.R117W 0.42 deleterious(0) probably_damaging(0.993) TCGA-CC-A7IL-01 19 56372857 56372857 C A NLRP4 Silent p.T654T 0.49 TCGA-CC-A7IL-01 19 57647323 57647323 G A ZIM3 Missense_Mutation p.P128S 0.46 tolerated(0.67) benign(0.017) TCGA-CC-A7IL-01 19 58420786 58420786 T A ZNF417 Missense_Mutation p.Q287L 0.39 tolerated(0.07) benign(0.116) TCGA-CC-A7IL-01 19 58597611 58597611 G A ZSCAN18 Silent p.D312D 0.49 TCGA-CC-A7IL-01 19 763554 763554 G T MISP Missense_Mutation p.W668C 0.50 deleterious(0) probably_damaging(1) TCGA-CC-A7IL-01 1 100356775 100356775 G T AGL Splice_Site p.X938_splice 0.45 TCGA-CC-A7IL-01 1 100356784 100356784 T G AGL Missense_Mutation p.S941A 0.46 deleterious(0.04) possibly_damaging(0.826) TCGA-CC-A7IL-01 1 112031572 112031572 C A ADORA3 Missense_Mutation p.A178S 0.46 deleterious_low_confidence(0.01) benign(0.199) TCGA-CC-A7IL-01 1 150237111 150237111 G A CA14 3'UTR 0.38 TCGA-CC-A7IL-01 1 156209535 156209535 G C PMF1 Intron 0.40 TCGA-CC-A7IL-01 1 161087831 161087831 G A PFDN2 5'UTR 0.14 TCGA-CC-A7IL-01 1 170633465 170633465 G T PRRX1 Missense_Mutation p.V36F 0.58 deleterious(0) probably_damaging(0.983) TCGA-CC-A7IL-01 1 177199003 177199003 C T BRINP2 5'UTR 0.18 TCGA-CC-A7IL-01 1 181701871 181701871 G T CACNA1E Missense_Mutation p.W883C 0.57 tolerated(0.21) possibly_damaging(0.759) TCGA-CC-A7IL-01 1 183273987 183273987 C A NMNAT2 Intron 0.30 TCGA-CC-A7IL-01 1 197032133 197032133 T C F13B Missense_Mutation p.Y40C 0.53 deleterious(0) probably_damaging(1) TCGA-CC-A7IL-01 1 201752875 201752875 G A NAV1 Missense_Mutation p.S900N 0.30 tolerated(0.06) benign(0.222) TCGA-CC-A7IL-01 1 201982370 201982370 C G ELF3 Missense_Mutation p.P250R 0.63 deleterious(0) possibly_damaging(0.888) TCGA-CC-A7IL-01 1 206905738 206905738 G T MAPKAPK2 Intron 0.65 TCGA-CC-A7IL-01 1 216173882 216173882 G C USH2A Missense_Mutation p.H2116Q 0.33 benign(0.15) TCGA-CC-A7IL-01 1 224370959 224370961 GCC - DEGS1 5'UTR 0.13 TCGA-CC-A7IL-01 1 242048690 242048690 A C EXO1 Missense_Mutation p.R762S 0.46 deleterious(0) possibly_damaging(0.616) TCGA-CC-A7IL-01 1 248458206 248458206 G A OR2T12 Silent p.L225L 0.40 TCGA-CC-A7IL-01 1 67724414 67724414 T G IL23R Missense_Mutation p.L498R 0.46 deleterious(0.02) probably_damaging(0.955) TCGA-CC-A7IL-01 1 79472325 79472325 C A ELTD1 Silent p.P5P 0.44 TCGA-CC-A7IL-01 20 10030419 10030424 ATTTAA - ANKEF1 In_Frame_Del p.L402_N403del 0.36 TCGA-CC-A7IL-01 20 23584366 23584366 T A CST9 Silent p.R87R 0.48 TCGA-CC-A7IL-01 20 3102887 3102887 T C UBOX5 Missense_Mutation p.H133R 0.52 tolerated(0.11) possibly_damaging(0.696) TCGA-CC-A7IL-01 20 34832689 34832689 G T AAR2 Silent p.R276R 0.69 TCGA-CC-A7IL-01 20 40049157 40049157 G A CHD6 Missense_Mutation p.H2040Y 0.19 tolerated_low_confidence(0.08) benign(0.146) TCGA-CC-A7IL-01 21 38865317 38865317 A T DYRK1A Splice_Site p.X318_splice 0.50 TCGA-CC-A7IL-01 21 39672726 39672726 A C KCNJ15 3'UTR 0.21 TCGA-CC-A7IL-01 22 17071712 17071712 C G CCT8L2 3'UTR 0.35 TCGA-CC-A7IL-01 22 22277762 22277762 C T PPM1F Silent p.L356L 0.38 TCGA-CC-A7IL-01 22 29696321 29696321 A G EWSR1 3'UTR 0.51 TCGA-CC-A7IL-01 22 29708064 29708064 G A GAS2L1 3'UTR 0.24 TCGA-CC-A7IL-01 2 141665624 141665624 C A LRP1B Missense_Mutation p.W1114C 0.53 probably_damaging(0.99) TCGA-CC-A7IL-01 2 179496878 179496878 C T TTN Silent p.V14581V 0.52 TCGA-CC-A7IL-01 2 182323028 182323028 C T ITGA4 Silent p.C101C 0.39 TCGA-CC-A7IL-01 2 183790208 183790208 T C NCKAP1 3'UTR 0.47 TCGA-CC-A7IL-01 2 25467466 25467466 C A DNMT3A Missense_Mutation p.C537F 0.41 deleterious(0) probably_damaging(0.999) TCGA-CC-A7IL-01 2 25467523 25467523 T C DNMT3A Splice_Site p.X519_splice 0.60 TCGA-CC-A7IL-01 2 74751076 74751076 C T DQX1 Missense_Mutation p.V264M 0.38 deleterious(0.04) possibly_damaging(0.591) TCGA-CC-A7IL-01 2 74757927 74757927 A G HTRA2 Silent p.A230A 0.51 TCGA-CC-A7IL-01 2 86265979 86265979 A C POLR1A Missense_Mutation p.V1293G 0.42 deleterious(0) probably_damaging(1) TCGA-CC-A7IL-01 2 98275016 98275016 A C ACTR1B Silent p.P177P 0.47 TCGA-CC-A7IL-01 3 112732231 112732231 T C C3orf17 Missense_Mutation p.T121A 0.63 tolerated(0.82) benign(0.009) TCGA-CC-A7IL-01 3 124449262 124449262 G A UMPS 5'UTR 0.18 TCGA-CC-A7IL-01 3 168806927 168806927 T C MECOM Missense_Mutation p.H1026R 0.60 tolerated(0.15) probably_damaging(0.969) TCGA-CC-A7IL-01 3 172351796 172351796 T C NCEH1 Silent p.P272P 0.31 TCGA-CC-A7IL-01 3 41266098 41266098 A T CTNNB1 Missense_Mutation p.D32V 0.25 deleterious(0) probably_damaging(0.988) TCGA-CC-A7IL-01 3 47449186 47449186 G T PTPN23 Splice_Site p.X335_splice 0.59 TCGA-CC-A7IL-01 3 49759578 49759578 G A GMPPB Silent p.D257D 0.34 TCGA-CC-A7IL-01 3 50313044 50313044 G C LSMEM2 5'Flank 0.29 TCGA-CC-A7IL-01 3 56809247 56809247 C G ARHGEF3 Intron 0.31 TCGA-CC-A7IL-01 3 57271521 57271521 A G APPL1 Missense_Mutation p.N52S 0.31 tolerated(0.13) possibly_damaging(0.85) TCGA-CC-A7IL-01 4 107845304 107845304 G A DKK2 Missense_Mutation p.A196V 0.42 deleterious(0) probably_damaging(0.978) TCGA-CC-A7IL-01 4 122251638 122251638 C A QRFPR Missense_Mutation p.A280S 0.44 tolerated(0.09) benign(0.008) TCGA-CC-A7IL-01 4 170077719 170077719 C T SH3RF1 Missense_Mutation p.E169K 0.38 deleterious(0) possibly_damaging(0.617) TCGA-CC-A7IL-01 4 17660125 17660125 C T FAM184B Missense_Mutation p.A629T 0.13 tolerated(0.13) benign(0.076) TCGA-CC-A7IL-01 4 30724307 30724307 G T PCDH7 Silent p.G421G 0.39 TCGA-CC-A7IL-01 4 96762058 96762058 G A PDHA2 Missense_Mutation p.D253N 0.53 tolerated(0.51) possibly_damaging(0.484) TCGA-CC-A7IL-01 5 126774132 126774132 A C MEGF10 Silent p.P702P 0.28 TCGA-CC-A7IL-01 5 140476384 140476384 G T PCDHB2 Missense_Mutation p.Q670H 0.40 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-CC-A7IL-01 5 140476385 140476385 C G PCDHB2 Missense_Mutation p.P671A 0.45 deleterious_low_confidence(0) possibly_damaging(0.858) TCGA-CC-A7IL-01 5 140572026 140572026 C G PCDHB10 5'UTR 0.56 TCGA-CC-A7IL-01 5 140798888 140798888 T G PCDHGB7 Missense_Mutation p.S488A 0.45 deleterious(0.01) possibly_damaging(0.547) TCGA-CC-A7IL-01 5 169423087 169423087 C A DOCK2 Intron 0.37 TCGA-CC-A7IL-01 6 121434235 121434235 G A TBC1D32 Nonsense_Mutation p.Q1048* 0.90 TCGA-CC-A7IL-01 6 130374111 130374111 A C L3MBTL3 Missense_Mutation p.D186A 0.87 tolerated(0.17) benign(0.21) TCGA-CC-A7IL-01 6 149285691 149285691 C A UST Missense_Mutation p.R225S 0.90 deleterious(0.03) possibly_damaging(0.66) TCGA-CC-A7IL-01 6 27419760 27419760 T C ZNF184 Silent p.Q526Q 0.25 TCGA-CC-A7IL-01 6 28497290 28497290 G C GPX5 Missense_Mutation p.K50N 0.04 deleterious(0) benign(0.011) TCGA-CC-A7IL-01 6 29797329 29797329 G T HLA-G Missense_Mutation p.V252L 0.26 deleterious_low_confidence(0.03) benign(0.003) TCGA-CC-A7IL-01 6 30691141 30691162 GGGCCAAAGGCCACTACACAGA - TUBB Frame_Shift_Del p.K103Pfs*26 0.27 TCGA-CC-A7IL-01 6 33239656 33239656 C A VPS52 5'UTR 0.24 TCGA-CC-A7IL-01 6 43039049 43039049 G T KLC4 Missense_Mutation p.A416S 0.68 deleterious(0.01) benign(0.173) TCGA-CC-A7IL-01 6 74073354 74073354 A G KHDC3L Missense_Mutation p.E142G 0.14 deleterious(0) benign(0.363) TCGA-CC-A7IL-01 6 76024770 76024770 G A FILIP1 Nonsense_Mutation p.Q260* 0.88 TCGA-CC-A7IL-01 7 127231497 127231497 A C ARF5 3'UTR 0.56 TCGA-CC-A7IL-01 7 136936111 136936111 C T PTN Nonsense_Mutation p.W106* 0.29 TCGA-CC-A7IL-01 7 44573141 44573141 C T NPC1L1 Missense_Mutation p.M766I 0.57 deleterious(0) probably_damaging(0.974) TCGA-CC-A7IL-01 7 80123960 80123960 G A GNAT3 Missense_Mutation p.A41V 0.32 deleterious(0) benign(0.389) TCGA-CC-A7IL-01 7 82072908 82072908 C T CACNA2D1 5'UTR 0.73 TCGA-CC-A7IL-01 7 95705439 95705439 A G DYNC1I1 Missense_Mutation p.H544R 0.72 deleterious(0.02) possibly_damaging(0.672) TCGA-CC-A7IL-01 8 105511591 105511591 C A LRP12 Silent p.S143S 0.27 TCGA-CC-A7IL-01 8 117658834 117658834 C T EIF3H Silent p.Q279Q 0.36 TCGA-CC-A7IL-01 8 95399347 95399347 T C RAD54B Missense_Mutation p.K617R 0.58 tolerated(0.55) benign(0.001) TCGA-CC-A7IL-01 9 102595735 102595735 G C NR4A3 Missense_Mutation p.R429T 0.45 deleterious(0.03) benign(0.023) TCGA-CC-A7IL-01 9 116268749 116268749 G A RGS3 Missense_Mutation p.C354Y 0.37 deleterious(0) probably_damaging(1) TCGA-CC-A7IL-01 9 21239412 21239412 G - IFNA14 Frame_Shift_Del p.L175Sfs*11 0.27 TCGA-CC-A7IL-01 9 37783971 37783971 T C EXOSC3 Silent p.P138P 0.39 TCGA-CC-A7IL-01 9 4664727 4664727 C T PPAPDC2 3'UTR 0.32 TCGA-CC-A7IL-01 9 5787026 5787026 T C ERMP1 3'UTR 0.31 TCGA-CC-A7IL-01 9 86585154 86585154 T G HNRNPK Missense_Mutation p.E428D 0.39 tolerated(0.05) benign(0.243) TCGA-CC-A7IL-01 X 106846185 106846185 G A FRMPD3 Missense_Mutation p.R1672Q 0.93 deleterious(0.01) probably_damaging(0.997) TCGA-CC-A7IL-01 X 134988645 134988645 C G SAGE1 Missense_Mutation p.T224S 0.92 tolerated(0.13) benign(0.062) TCGA-CC-A7IL-01 X 147062874 147062874 G A FMR1NB 5'UTR 0.96 TCGA-CC-A7IL-01 X 23410846 23410846 G A PTCHD1 Missense_Mutation p.C404Y 0.90 tolerated(0.58) benign(0.378) TCGA-CC-A7IL-01 X 3019189 3019189 A G ARSF Silent p.T343T 0.84 TCGA-CC-A7IL-01 Y 6939610 6939610 A C TBL1Y Missense_Mutation p.T248P 0.89 deleterious(0) probably_damaging(0.912) TCGA-CC-A8HS-01 10 17865282 17865282 T G MRC1L1 Missense_Mutation p.C91G 0.36 probably_damaging(0.998) TCGA-CC-A8HS-01 10 46258867 46258867 T G FAM21C Nonsense_Mutation p.L556* 0.60 TCGA-CC-A8HS-01 11 11643115 11643115 G A GALNT18 Missense_Mutation p.T9I 0.38 deleterious(0.01) probably_damaging(0.987) TCGA-CC-A8HS-01 11 62342877 62342877 G A TUT1 Missense_Mutation p.H810Y 0.52 deleterious(0.02) benign(0.081) TCGA-CC-A8HS-01 11 62607038 62607038 G A WDR74 Missense_Mutation p.A2V 0.41 deleterious_low_confidence(0.03) possibly_damaging(0.572) TCGA-CC-A8HS-01 11 63953590 63953590 G C STIP1 5'UTR 0.47 TCGA-CC-A8HS-01 11 7981277 7981277 T C NLRP10 Missense_Mutation p.K628E 0.04 tolerated(0.08) benign(0.003) TCGA-CC-A8HS-01 12 112685925 112685925 C G HECTD4 Missense_Mutation p.M1252I 0.04 benign(0) TCGA-CC-A8HS-01 12 20782946 20782946 G C PDE3A Missense_Mutation p.E549Q 0.35 deleterious(0.01) benign(0.224) TCGA-CC-A8HS-01 12 52844309 52844309 C T KRT6B Silent p.P212P 0.13 TCGA-CC-A8HS-01 13 28589813 28589813 G T FLT3 Missense_Mutation p.A856D 0.83 deleterious(0) probably_damaging(0.997) TCGA-CC-A8HS-01 13 39564842 39564842 G A STOML3 Missense_Mutation p.S6F 0.65 deleterious(0.03) benign(0.054) TCGA-CC-A8HS-01 13 96239841 96239841 T C DZIP1 Missense_Mutation p.T724A 0.48 tolerated(0.07) benign(0.257) TCGA-CC-A8HS-01 14 20850191 20850191 C T TEP1 Silent p.L1435L 0.53 TCGA-CC-A8HS-01 14 68257473 68257473 G T ZFYVE26 Missense_Mutation p.N857K 0.09 tolerated(0.18) benign(0.295) TCGA-CC-A8HS-01 14 88970830 88970830 G C PTPN21 Missense_Mutation p.Q176E 0.77 tolerated(0.33) possibly_damaging(0.755) TCGA-CC-A8HS-01 15 66795056 66795056 G C RPL4 Silent p.T105T 0.39 TCGA-CC-A8HS-01 16 23364163 23364163 T A SCNN1B Missense_Mutation p.L118Q 0.39 tolerated(0.26) probably_damaging(0.999) TCGA-CC-A8HS-01 16 67235700 67235700 A G ELMO3 Missense_Mutation p.E378G 0.12 tolerated(0.2) benign(0.105) TCGA-CC-A8HS-01 16 72016096 72016096 C G PKD1L3 RNA 0.05 TCGA-CC-A8HS-01 17 3819529 3819529 G C P2RX1 5'UTR 0.24 TCGA-CC-A8HS-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.63 tolerated(0.13) possibly_damaging(0.631) TCGA-CC-A8HS-01 17 77081800 77081800 G T ENGASE Missense_Mutation p.R600L 0.42 tolerated(0.23) benign(0.199) TCGA-CC-A8HS-01 18 44057048 44057048 T A LOXHD1 3'UTR 0.29 TCGA-CC-A8HS-01 19 22363152 22363152 T G ZNF676 Missense_Mutation p.K456T 0.29 deleterious(0) probably_damaging(0.997) TCGA-CC-A8HS-01 19 36050082 36050082 G A ATP4A Silent p.S356S 0.72 TCGA-CC-A8HS-01 19 38795301 38795301 C A C19orf33 Missense_Mutation p.S59Y 0.72 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-CC-A8HS-01 19 53303558 53303558 G C ZNF28 Missense_Mutation p.Q514E 0.70 tolerated(0.06) benign(0.084) TCGA-CC-A8HS-01 19 54604100 54604100 C T OSCAR 5'UTR 0.09 TCGA-CC-A8HS-01 19 54665975 54665975 T C TMC4 Missense_Mutation p.T523A 0.18 tolerated(0.66) benign(0.186) TCGA-CC-A8HS-01 19 56539531 56539531 C T NLRP5 Silent p.D644D 0.11 TCGA-CC-A8HS-01 19 58386258 58386258 C A ZNF814 Missense_Mutation p.G167V 0.54 tolerated(0.14) possibly_damaging(0.739) TCGA-CC-A8HS-01 19 9074011 9074011 G T MUC16 Missense_Mutation p.P4479T 0.51 unknown(0) TCGA-CC-A8HS-01 1 151506476 151506476 A G CGN Missense_Mutation p.Q923R 0.11 tolerated(0.11) probably_damaging(0.982) TCGA-CC-A8HS-01 1 155880264 155880264 G A RIT1 Missense_Mutation p.P64L 0.04 tolerated(0.36) benign(0.015) TCGA-CC-A8HS-01 1 198698298 198698298 G A PTPRC Missense_Mutation p.R621K 0.57 tolerated(0.65) benign(0.013) TCGA-CC-A8HS-01 1 205312868 205312868 C G KLHDC8A 5'UTR 0.10 TCGA-CC-A8HS-01 1 245771032 245771032 G A KIF26B Missense_Mutation p.G546D 0.59 deleterious(0) unknown(0) TCGA-CC-A8HS-01 1 247875822 247875822 G A OR6F1 Missense_Mutation p.P79L 0.24 deleterious(0) probably_damaging(1) TCGA-CC-A8HS-01 1 248525807 248525807 T C OR2T4 Missense_Mutation p.F309L 0.29 deleterious(0.04) benign(0.246) TCGA-CC-A8HS-01 1 94362176 94362176 G C GCLM Missense_Mutation p.Q180E 0.47 deleterious(0.02) benign(0.124) TCGA-CC-A8HS-01 2 175292654 175292654 A C SCRN3 3'UTR 0.37 TCGA-CC-A8HS-01 2 220352988 220352988 G A SPEG Missense_Mutation p.C2605Y 0.48 probably_damaging(0.999) TCGA-CC-A8HS-01 2 232458829 232458829 G A C2orf57 Silent p.Q389Q 0.46 TCGA-CC-A8HS-01 2 50280467 50280467 G C NRXN1 Missense_Mutation p.T1397S 0.39 deleterious(0.02) benign(0.387) TCGA-CC-A8HS-01 2 63272159 63272159 G T EHBP1 Intron 0.04 TCGA-CC-A8HS-01 2 69784077 69784077 C T AAK1 Missense_Mutation p.S66N 0.39 tolerated(0.77) unknown(0) TCGA-CC-A8HS-01 3 112991482 112991482 G A BOC Missense_Mutation p.R298H 0.23 tolerated(0.1) benign(0.013) TCGA-CC-A8HS-01 3 120408642 120408642 G A RABL3 3'UTR 0.27 TCGA-CC-A8HS-01 3 129179804 129179804 G T IFT122 Missense_Mutation p.R127M 0.25 tolerated_low_confidence(0.21) benign(0.003) TCGA-CC-A8HS-01 3 154146570 154146570 C G GPR149 Missense_Mutation p.A279P 0.53 tolerated(0.42) benign(0.002) TCGA-CC-A8HS-01 3 33194727 33194727 G A SUSD5 Missense_Mutation p.T466M 0.24 deleterious(0.03) possibly_damaging(0.847) TCGA-CC-A8HS-01 3 56779318 56779318 C A ARHGEF3 Missense_Mutation p.R294L 0.50 deleterious(0) probably_damaging(0.998) TCGA-CC-A8HS-01 3 88040772 88040772 A G HTR1F Silent p.A291A 0.33 TCGA-CC-A8HS-01 4 164436503 164436503 A G TMA16 Missense_Mutation p.E93G 0.39 deleterious(0.01) benign(0.013) TCGA-CC-A8HS-01 4 175414376 175414376 T - HPGD Frame_Shift_Del p.E197Kfs*8 0.39 TCGA-CC-A8HS-01 4 39460192 39460192 C A RPL9 5'UTR 0.36 TCGA-CC-A8HS-01 5 148808549 148808549 A G MIR143 RNA 0.09 TCGA-CC-A8HS-01 5 16689975 16689975 T A MYO10 Missense_Mutation p.D1285V 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-CC-A8HS-01 5 167654929 167654929 A T TENM2 Missense_Mutation p.N1772Y 0.34 tolerated(1) benign(0) TCGA-CC-A8HS-01 6 117746713 117746713 G T ROS1 Nonsense_Mutation p.S36* 0.51 TCGA-CC-A8HS-01 6 128841699 128841699 C G PTPRK 5'UTR 0.38 TCGA-CC-A8HS-01 6 30919613 30919613 G C DPCR1 Missense_Mutation p.E1124D 0.48 tolerated(0.6) possibly_damaging(0.754) TCGA-CC-A8HS-01 6 42986657 42986657 C T KLHDC3 Missense_Mutation p.R293C 0.19 deleterious(0) possibly_damaging(0.751) TCGA-CC-A8HS-01 6 96655977 96655977 G A FUT9 3'UTR 0.21 TCGA-CC-A8HS-01 7 48443322 48443322 G C ABCA13 Missense_Mutation p.Q3972H 0.41 benign(0.038) TCGA-CC-A8HS-01 7 92020652 92020652 G C ANKIB1 Missense_Mutation p.R742T 0.05 deleterious(0) probably_damaging(0.978) TCGA-CC-A8HS-01 8 108334185 108334185 C T ANGPT1 Silent p.K249K 0.38 TCGA-CC-A8HS-01 9 140115059 140115059 G A RNF208 Silent p.A202A 0.05 TCGA-CC-A8HS-01 9 34833331 34833331 G - FAM205B RNA 0.14 TCGA-CC-A8HS-01 9 35100610 35100610 G A STOML2 Silent p.T306T 0.18 TCGA-CC-A8HS-01 X 153583264 153583264 G T FLNA Missense_Mutation p.Q1716K 0.82 tolerated(0.37) benign(0.003) TCGA-CC-A8HT-01 10 105658711 105658711 C T OBFC1 Missense_Mutation p.E169K 0.29 deleterious(0.01) possibly_damaging(0.718) TCGA-CC-A8HT-01 10 115988094 115988094 C A TDRD1 Intron 0.37 TCGA-CC-A8HT-01 10 1246297 1246297 G T ADARB2 Intron 0.23 TCGA-CC-A8HT-01 10 126631222 126631222 G T ZRANB1 Missense_Mutation p.D54Y 0.09 tolerated(0.07) benign(0.341) TCGA-CC-A8HT-01 10 131977757 131977757 C T GLRX3 Intron 0.31 TCGA-CC-A8HT-01 10 17113474 17113474 G A CUBN Missense_Mutation p.T859I 0.21 tolerated(0.5) possibly_damaging(0.479) TCGA-CC-A8HT-01 10 29822350 29822350 C T SVIL Missense_Mutation p.A316T 0.16 tolerated(0.23) benign(0.049) TCGA-CC-A8HT-01 10 33619799 33619799 C T NRP1 Missense_Mutation p.D29N 0.19 deleterious(0.03) benign(0.276) TCGA-CC-A8HT-01 10 38647391 38647391 G T HSD17B7P2 RNA 0.26 TCGA-CC-A8HT-01 10 46999960 46999960 G T GPRIN2 Silent p.L360L 0.14 TCGA-CC-A8HT-01 10 48383926 48383926 T G RBP3 Missense_Mutation p.E1102D 0.33 tolerated(0.5) possibly_damaging(0.523) TCGA-CC-A8HT-01 10 5791217 5791217 A C FAM208B Silent p.R1945R 0.25 TCGA-CC-A8HT-01 10 5945032 5945032 G C FBXO18 Missense_Mutation p.L68F 0.30 tolerated(0.1) possibly_damaging(0.727) TCGA-CC-A8HT-01 10 7214067 7214067 C T SFMBT2 Silent p.E735E 0.27 TCGA-CC-A8HT-01 11 10327896 10327896 G T ADM Missense_Mutation p.R89L 0.18 tolerated(0.17) benign(0.029) TCGA-CC-A8HT-01 11 123893761 123893761 C A OR10G9 Silent p.G14G 0.22 TCGA-CC-A8HT-01 11 124440061 124440061 G C OR8A1 Missense_Mutation p.G33R 0.19 deleterious(0) probably_damaging(1) TCGA-CC-A8HT-01 11 24518665 24518665 C A LUZP2 5'Flank 0.23 TCGA-CC-A8HT-01 11 34460553 34460553 C T CAT 5'UTR 0.23 TCGA-CC-A8HT-01 11 4929380 4929380 C T OR51A7 Missense_Mutation p.H261Y 0.40 tolerated(0.07) benign(0.097) TCGA-CC-A8HT-01 11 55655563 55655563 C A TRIM51 Missense_Mutation p.A188E 0.30 tolerated(0.17) possibly_damaging(0.477) TCGA-CC-A8HT-01 11 62288122 62288122 C T AHNAK Silent p.K4589K 0.22 TCGA-CC-A8HT-01 11 62344401 62344401 C A TUT1 Silent p.V491V 0.25 TCGA-CC-A8HT-01 11 63883778 63883778 G A FLRT1 Silent p.T13T 0.28 TCGA-CC-A8HT-01 11 64138858 64138858 G T RPS6KA4 Missense_Mutation p.R742L 0.17 tolerated(0.15) benign(0.039) TCGA-CC-A8HT-01 11 64863897 64863897 G T VPS51 Missense_Mutation p.D59Y 0.33 deleterious(0.01) possibly_damaging(0.635) TCGA-CC-A8HT-01 11 65144465 65144465 G - SLC25A45 Frame_Shift_Del p.P141Hfs*30 0.21 TCGA-CC-A8HT-01 11 73760482 73760482 C A C2CD3 Missense_Mutation p.C1754F 0.30 deleterious(0) probably_damaging(0.999) TCGA-CC-A8HT-01 11 76164378 76164378 G T C11orf30 Missense_Mutation p.R64L 0.06 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-CC-A8HT-01 12 108169650 108169650 A C ASCL4 3'UTR 0.23 TCGA-CC-A8HT-01 12 109616910 109616910 A G ACACB Silent p.P485P 0.19 TCGA-CC-A8HT-01 12 112926248 112926248 G T PTPN11 Missense_Mutation p.A461S 0.20 deleterious(0.05) possibly_damaging(0.884) TCGA-CC-A8HT-01 12 119540048 119540048 C A SRRM4 Missense_Mutation p.P47T 0.30 tolerated_low_confidence(0.27) unknown(0) TCGA-CC-A8HT-01 12 121687622 121687622 G A CAMKK2 Missense_Mutation p.P431S 0.17 deleterious(0) probably_damaging(0.998) TCGA-CC-A8HT-01 12 121947514 121947514 C G KDM2B Missense_Mutation p.E501D 0.31 tolerated(0.21) benign(0.002) TCGA-CC-A8HT-01 12 132405693 132405693 G A ULK1 Missense_Mutation p.V1004I 0.26 tolerated(0.18) possibly_damaging(0.576) TCGA-CC-A8HT-01 12 18801061 18801061 C T PIK3C2G 3'UTR 0.17 TCGA-CC-A8HT-01 12 28702187 28702187 G A CCDC91 3'UTR 0.20 TCGA-CC-A8HT-01 12 3701519 3701519 G A PRMT8 Splice_Site p.X367_splice 0.25 TCGA-CC-A8HT-01 12 46285641 46285641 T A ARID2 Nonsense_Mutation p.C1667* 0.32 TCGA-CC-A8HT-01 12 5022104 5022104 T C KCNA1 3'UTR 0.24 TCGA-CC-A8HT-01 12 53684210 53684210 G A ESPL1 Missense_Mutation p.R1774Q 0.22 tolerated(0.16) possibly_damaging(0.504) TCGA-CC-A8HT-01 12 57577573 57577573 A G LRP1 Missense_Mutation p.Y1937C 0.15 probably_damaging(0.999) TCGA-CC-A8HT-01 12 63061108 63061108 A T PPM1H Missense_Mutation p.V416E 0.29 deleterious(0) probably_damaging(0.999) TCGA-CC-A8HT-01 12 72083445 72083445 C A TMEM19 Missense_Mutation p.L69I 0.39 tolerated(0.25) benign(0) TCGA-CC-A8HT-01 12 72266748 72266748 G T TBC1D15 Missense_Mutation p.A57S 0.05 tolerated(0.26) benign(0.019) TCGA-CC-A8HT-01 12 93213181 93213181 T C EEA1 Missense_Mutation p.K544R 0.21 tolerated(0.57) benign(0.009) TCGA-CC-A8HT-01 12 9349002 9349002 A T PZP Missense_Mutation p.I339N 0.16 deleterious(0) possibly_damaging(0.641) TCGA-CC-A8HT-01 12 9356498 9356498 T A PZP Nonsense_Mutation p.K45* 0.25 TCGA-CC-A8HT-01 12 94772626 94772626 C T CCDC41 Missense_Mutation p.A248T 0.21 deleterious(0) benign(0.068) TCGA-CC-A8HT-01 13 25744099 25744099 G T AMER2 Missense_Mutation p.D553E 0.27 deleterious(0) probably_damaging(0.999) TCGA-CC-A8HT-01 13 39438522 39438522 G T FREM2 Nonsense_Mutation p.E2588* 0.19 TCGA-CC-A8HT-01 13 41705442 41705442 C A KBTBD6 Missense_Mutation p.R402S 0.28 tolerated(0.34) benign(0.007) TCGA-CC-A8HT-01 13 70275789 70275789 A G KLHL1 3'UTR 0.21 TCGA-CC-A8HT-01 13 86367920 86367920 G A SLITRK6 3'UTR 0.36 TCGA-CC-A8HT-01 14 52174893 52174893 A G FRMD6 Missense_Mutation p.Y219C 0.31 deleterious(0) probably_damaging(1) TCGA-CC-A8HT-01 14 71216737 71216737 A C MAP3K9 Missense_Mutation p.L355V 0.34 deleterious(0) probably_damaging(0.973) TCGA-CC-A8HT-01 15 42453011 42453011 G A VPS39 Missense_Mutation p.P857S 0.18 deleterious(0.04) probably_damaging(0.983) TCGA-CC-A8HT-01 15 45567822 45567822 A C SLC28A2 3'UTR 0.21 TCGA-CC-A8HT-01 15 62361579 62361579 T G C2CD4A 3'UTR 0.26 TCGA-CC-A8HT-01 15 65623935 65623935 T C IGDCC3 Missense_Mutation p.N404S 0.22 deleterious(0.02) probably_damaging(0.996) TCGA-CC-A8HT-01 15 97326945 97326945 C A SPATA8 Silent p.A20A 0.26 TCGA-CC-A8HT-01 16 56539942 56539942 T C BBS2 Missense_Mutation p.N242D 0.34 deleterious(0.01) probably_damaging(0.994) TCGA-CC-A8HT-01 16 67942761 67942761 C T PSKH1 Missense_Mutation p.H37Y 0.36 deleterious_low_confidence(0.01) benign(0.255) TCGA-CC-A8HT-01 16 88747782 88747782 C A SNAI3 Silent p.L139L 0.33 TCGA-CC-A8HT-01 17 10227448 10227448 G T MYH13 Missense_Mutation p.A942D 0.28 deleterious(0) benign(0.224) TCGA-CC-A8HT-01 17 18036653 18036653 C T MYO15A Silent p.L1479L 0.30 TCGA-CC-A8HT-01 17 34923515 34923515 G A GGNBP2 Missense_Mutation p.D181N 0.18 deleterious(0.01) probably_damaging(0.973) TCGA-CC-A8HT-01 17 34945736 34945736 A T GGNBP2 Missense_Mutation p.E663D 0.18 tolerated_low_confidence(0.48) benign(0.306) TCGA-CC-A8HT-01 17 43516880 43516880 C A PLEKHM1 Missense_Mutation p.D1008Y 0.22 deleterious(0) probably_damaging(0.945) TCGA-CC-A8HT-01 17 6386917 6386917 G A PITPNM3 Silent p.F169F 0.43 TCGA-CC-A8HT-01 17 7577570 7577570 C A TP53 Missense_Mutation p.M237I 0.40 deleterious(0) probably_damaging(0.997) TCGA-CC-A8HT-01 17 77921558 77921558 C T TBC1D16 Silent p.A538A 0.28 TCGA-CC-A8HT-01 17 8046658 8046694 CAGCAGCCCCCTCAGCACGGGGGAGCTCCTCCAGCTG - PER1 Frame_Shift_Del p.Q988Lfs*122 0.26 TCGA-CC-A8HT-01 17 8049299 8049299 C - PER1 Frame_Shift_Del p.G732Efs*12 0.24 TCGA-CC-A8HT-01 17 8053380 8053380 C G PER1 Missense_Mutation p.K146N 0.39 deleterious(0) probably_damaging(0.999) TCGA-CC-A8HT-01 17 81052084 81052084 C T METRNL Missense_Mutation p.R234W 0.29 tolerated(0.07) probably_damaging(1) TCGA-CC-A8HT-01 18 14543306 14543306 C A POTEC 5'Flank 0.18 TCGA-CC-A8HT-01 18 19231483 19231483 A C ABHD3 3'UTR 0.26 TCGA-CC-A8HT-01 18 21660787 21660787 G A TTC39C Silent p.V233V 0.33 TCGA-CC-A8HT-01 18 22805355 22805355 C A ZNF521 Nonsense_Mutation p.G843* 0.22 TCGA-CC-A8HT-01 18 30804869 30804869 G T CCDC178 Missense_Mutation p.A563E 0.21 tolerated(0.53) benign(0.029) TCGA-CC-A8HT-01 18 31709985 31709985 C A NOL4 Splice_Site p.X89_splice 0.23 TCGA-CC-A8HT-01 18 44260286 44260293 TGACCAGG - ST8SIA5 Nonsense_Mutation p.Y281* 0.18 TCGA-CC-A8HT-01 18 51057047 51057047 T A DCC 3'UTR 0.34 TCGA-CC-A8HT-01 18 63530227 63530227 T A CDH7 Intron 0.26 TCGA-CC-A8HT-01 18 63547822 63547822 A T CDH7 Missense_Mutation p.R684W 0.24 deleterious(0) probably_damaging(0.98) TCGA-CC-A8HT-01 18 77170794 77170794 G T NFATC1 Silent p.P160P 0.33 TCGA-CC-A8HT-01 18 8253274 8253274 T A PTPRM Missense_Mutation p.H872Q 0.25 tolerated(0.14) possibly_damaging(0.865) TCGA-CC-A8HT-01 18 8370961 8370961 A T PTPRM Missense_Mutation p.E1043V 0.27 deleterious(0) possibly_damaging(0.525) TCGA-CC-A8HT-01 19 10439536 10439536 A G RAVER1 Missense_Mutation p.Y197H 0.25 deleterious(0) probably_damaging(1) TCGA-CC-A8HT-01 19 11352206 11352206 A G C19orf80 Missense_Mutation p.H182R 0.21 tolerated(0.16) benign(0.001) TCGA-CC-A8HT-01 19 12461479 12461479 G A ZNF442 Missense_Mutation p.S307F 0.24 tolerated(0.2) benign(0.03) TCGA-CC-A8HT-01 19 14674897 14674897 A G TECR Missense_Mutation p.H124R 0.23 tolerated(0.09) possibly_damaging(0.739) TCGA-CC-A8HT-01 19 16222682 16222682 C G RAB8A 5'UTR 0.18 TCGA-CC-A8HT-01 19 20003367 20003367 A T ZNF253 Silent p.S437S 0.22 TCGA-CC-A8HT-01 19 20044671 20044671 C T ZNF93 Missense_Mutation p.H303Y 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-CC-A8HT-01 19 40421508 40421508 C A FCGBP Missense_Mutation p.G805C 0.19 probably_damaging(0.993) TCGA-CC-A8HT-01 19 41313170 41313170 A G EGLN2 Missense_Mutation p.Y364C 0.26 deleterious(0) probably_damaging(0.962) TCGA-CC-A8HT-01 19 42909571 42909571 C T LIPE Silent p.G836G 0.15 TCGA-CC-A8HT-01 19 51175305 51175305 G A SHANK1 Missense_Mutation p.P882S 0.22 benign(0.234) TCGA-CC-A8HT-01 19 54313287 54313287 G A NLRP12 Silent p.T542T 0.19 TCGA-CC-A8HT-01 19 5690350 5690350 C G RPL36 Intron 0.32 TCGA-CC-A8HT-01 19 7923102 7923102 C T EVI5L Missense_Mutation p.A420V 0.23 deleterious(0.01) benign(0.122) TCGA-CC-A8HT-01 19 7975602 7975602 G T MAP2K7 Nonsense_Mutation p.E197* 0.20 TCGA-CC-A8HT-01 19 9058023 9058023 G A MUC16 Missense_Mutation p.P9808L 0.29 unknown(0) TCGA-CC-A8HT-01 19 9237267 9237267 A G OR7G3 Silent p.Y120Y 0.22 TCGA-CC-A8HT-01 1 10713269 10713269 C A CASZ1 Intron 0.36 TCGA-CC-A8HT-01 1 11008817 11008817 C T C1orf127 Missense_Mutation p.A459T 0.28 tolerated(0.11) possibly_damaging(0.719) TCGA-CC-A8HT-01 1 1222594 1222594 C G SCNN1D Missense_Mutation p.P409A 0.11 deleterious(0.01) probably_damaging(0.985) TCGA-CC-A8HT-01 1 151680335 151680335 G T CELF3 Missense_Mutation p.A188D 0.18 tolerated(0.09) possibly_damaging(0.597) TCGA-CC-A8HT-01 1 152127436 152127436 A C RPTN Silent p.T713T 0.10 TCGA-CC-A8HT-01 1 152883199 152883199 A G IVL Missense_Mutation p.Q309R 0.12 deleterious(0.01) possibly_damaging(0.717) TCGA-CC-A8HT-01 1 152884340 152884340 A G IVL 3'UTR 0.20 TCGA-CC-A8HT-01 1 154243295 154243295 G T UBAP2L 3'UTR 0.44 TCGA-CC-A8HT-01 1 154458426 154458426 C A SHE Missense_Mutation p.A432S 0.15 tolerated(0.6) probably_damaging(1) TCGA-CC-A8HT-01 1 161172205 161172205 C A NDUFS2 Missense_Mutation p.F10L 0.23 tolerated_low_confidence(1) benign(0) TCGA-CC-A8HT-01 1 168511286 168511286 G A XCL2 Missense_Mutation p.P41S 0.15 deleterious(0.05) probably_damaging(0.914) TCGA-CC-A8HT-01 1 168549360 168549360 C T XCL1 Missense_Mutation p.P41S 0.07 deleterious(0.05) probably_damaging(0.995) TCGA-CC-A8HT-01 1 172356293 172356293 C A DNM3 Silent p.S693S 0.26 TCGA-CC-A8HT-01 1 182797868 182797868 T A NPL Missense_Mutation p.V263E 0.15 deleterious(0) probably_damaging(0.949) TCGA-CC-A8HT-01 1 184723969 184723969 C T EDEM3 5'UTR 0.46 TCGA-CC-A8HT-01 1 200377850 200377850 C A ZNF281 Missense_Mutation p.Q328H 0.20 deleterious(0) probably_damaging(0.999) TCGA-CC-A8HT-01 1 201020120 201020120 C T CACNA1S Missense_Mutation p.A1369T 0.11 deleterious(0) probably_damaging(1) TCGA-CC-A8HT-01 1 201184917 201184917 G A IGFN1 Silent p.L3082L 0.20 TCGA-CC-A8HT-01 1 204210607 204210607 C A PLEKHA6 Missense_Mutation p.G769C 0.41 deleterious(0) probably_damaging(1) TCGA-CC-A8HT-01 1 20664223 20664223 G T VWA5B1 Missense_Mutation p.S676I 0.29 deleterious(0) probably_damaging(0.999) TCGA-CC-A8HT-01 1 216371684 216371684 A T USH2A Missense_Mutation p.W1352R 0.18 benign(0.234) TCGA-CC-A8HT-01 1 228503672 228503672 C G OBSCN Silent p.P5336P 0.36 TCGA-CC-A8HT-01 1 228547311 228547311 A T OBSCN Intron 0.18 TCGA-CC-A8HT-01 1 228645460 228645460 G A HIST3H2A Missense_Mutation p.S20L 0.21 deleterious_low_confidence(0.02) unknown(0) TCGA-CC-A8HT-01 1 230979535 230979535 G T C1orf198 Silent p.A164A 0.08 TCGA-CC-A8HT-01 1 242263975 242263975 T A PLD5 Missense_Mutation p.Y450F 0.24 deleterious(0) probably_damaging(0.997) TCGA-CC-A8HT-01 1 34684343 34684343 G T C1orf94 Missense_Mutation p.G593V 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-CC-A8HT-01 1 40431615 40431615 G T MFSD2A Missense_Mutation p.D228Y 0.21 deleterious(0.01) benign(0.021) TCGA-CC-A8HT-01 1 42047556 42047556 C T HIVEP3 Silent p.L971L 0.21 TCGA-CC-A8HT-01 1 71478137 71478137 T A PTGER3 Missense_Mutation p.T310S 0.26 tolerated(0.18) possibly_damaging(0.593) TCGA-CC-A8HT-01 1 75065587 75065587 C T C1orf173 Silent p.E506E 0.22 TCGA-CC-A8HT-01 1 75065589 75065589 C A C1orf173 Nonsense_Mutation p.E506* 0.22 TCGA-CC-A8HT-01 1 77529061 77529061 A T ST6GALNAC5 3'UTR 0.30 TCGA-CC-A8HT-01 20 2083558 2083558 A C STK35 Missense_Mutation p.S147R 0.50 deleterious_low_confidence(0.04) benign(0.024) TCGA-CC-A8HT-01 20 34450992 34450992 C T PHF20 Missense_Mutation p.P160S 0.21 tolerated(0.15) benign(0.021) TCGA-CC-A8HT-01 20 3451947 3451947 C T ATRN Silent p.L65L 0.12 TCGA-CC-A8HT-01 20 39657608 39657608 C T TOP1 5'UTR 0.19 TCGA-CC-A8HT-01 20 40050513 40050513 T C CHD6 Missense_Mutation p.T1588A 0.27 tolerated(1) benign(0.001) TCGA-CC-A8HT-01 20 42088512 42088512 C T SRSF6 Missense_Mutation p.R120W 0.26 deleterious(0) probably_damaging(1) TCGA-CC-A8HT-01 20 43355822 43355822 G A WISP2 Silent p.G209G 0.23 TCGA-CC-A8HT-01 20 49577347 49577347 C T MOCS3 3'UTR 0.17 TCGA-CC-A8HT-01 21 15858279 15858279 A C SAMSN1 Missense_Mutation p.L427R 0.21 deleterious(0) probably_damaging(0.998) TCGA-CC-A8HT-01 21 33984425 33984425 G A C21orf59 Silent p.R43R 0.25 TCGA-CC-A8HT-01 21 37603416 37603416 G A DOPEY2 Silent p.T778T 0.20 TCGA-CC-A8HT-01 21 46117302 46117302 C A KRTAP10-12 Nonsense_Mutation p.C62* 0.21 TCGA-CC-A8HT-01 22 22221631 22221631 C A MAPK1 Missense_Mutation p.G34C 0.23 deleterious(0) probably_damaging(0.994) TCGA-CC-A8HT-01 22 22724331 22724331 A T IGLV7-46 Missense_Mutation p.H76L 0.22 TCGA-CC-A8HT-01 22 25603290 25603290 T A CRYBB3 3'UTR 0.39 TCGA-CC-A8HT-01 22 38611943 38611943 C T MAFF 3'UTR 0.22 TCGA-CC-A8HT-01 22 41077826 41077826 G A MCHR1 Missense_Mutation p.R388H 0.32 deleterious(0) possibly_damaging(0.818) TCGA-CC-A8HT-01 22 42078511 42078511 C A NHP2L1 5'UTR 0.27 TCGA-CC-A8HT-01 22 43986003 43986003 C G EFCAB6 Missense_Mutation p.E995Q 0.25 deleterious(0.02) possibly_damaging(0.772) TCGA-CC-A8HT-01 22 44168801 44168801 G A EFCAB6 Nonsense_Mutation p.R108* 0.30 TCGA-CC-A8HT-01 22 44893314 44893314 C A LDOC1L Silent p.R41R 0.15 TCGA-CC-A8HT-01 22 51065813 51065813 C T ARSA Silent p.R82R 0.22 TCGA-CC-A8HT-01 2 125671760 125671760 C T CNTNAP5 Silent p.S1272S 0.25 TCGA-CC-A8HT-01 2 131523143 131523143 T C AMER3 3'UTR 0.34 TCGA-CC-A8HT-01 2 162761399 162761399 G T SLC4A10 Missense_Mutation p.K577N 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-CC-A8HT-01 2 168103206 168103206 A G XIRP2 Silent p.T1768T 0.27 TCGA-CC-A8HT-01 2 175309901 175309901 G A GPR155 Missense_Mutation p.L673F 0.28 deleterious(0) possibly_damaging(0.659) TCGA-CC-A8HT-01 2 179447182 179447182 G T TTN Missense_Mutation p.P22001T 0.19 TCGA-CC-A8HT-01 2 192288727 192288727 A C MYO1B 3'UTR 0.14 TCGA-CC-A8HT-01 2 196544891 196544891 G T SLC39A10 Missense_Mutation p.G42V 0.23 tolerated(0.12) possibly_damaging(0.708) TCGA-CC-A8HT-01 2 196545343 196545343 A T SLC39A10 Missense_Mutation p.T193S 0.24 tolerated(0.36) benign(0.004) TCGA-CC-A8HT-01 2 207169971 207169971 C G ZDBF2 Missense_Mutation p.P240R 0.26 tolerated(0.18) possibly_damaging(0.804) TCGA-CC-A8HT-01 2 222308221 222308221 A G EPHA4 Missense_Mutation p.I627T 0.19 deleterious(0) probably_damaging(0.922) TCGA-CC-A8HT-01 2 242405077 242405077 C T FARP2 Intron 0.18 TCGA-CC-A8HT-01 2 283165 283165 T G FAM150B Missense_Mutation p.R133S 0.20 deleterious(0) probably_damaging(0.997) TCGA-CC-A8HT-01 2 48132683 48132683 C A FBXO11 Silent p.P59P 0.40 TCGA-CC-A8HT-01 2 55571513 55571513 A T CCDC88A Missense_Mutation p.D393E 0.24 deleterious(0.02) benign(0.045) TCGA-CC-A8HT-01 2 77746081 77746081 G A LRRTM4 Missense_Mutation p.S305F 0.25 deleterious(0) possibly_damaging(0.776) TCGA-CC-A8HT-01 2 89999303 89999303 T G IGKV2D-28 Silent p.P35P 0.22 TCGA-CC-A8HT-01 2 96690205 96690205 G A GPAT2 Silent p.L547L 0.21 TCGA-CC-A8HT-01 3 100513777 100513777 C A ABI3BP Missense_Mutation p.Q626H 0.27 tolerated(0.09) probably_damaging(0.948) TCGA-CC-A8HT-01 3 113378345 113378345 T C KIAA2018 Silent p.Q728Q 0.24 TCGA-CC-A8HT-01 3 132061418 132061418 A G ACPP Missense_Mutation p.K193R 0.25 tolerated(0.23) benign(0.037) TCGA-CC-A8HT-01 3 136664512 136664512 A G NCK1 Missense_Mutation p.Y105C 0.29 tolerated(0.07) probably_damaging(0.95) TCGA-CC-A8HT-01 3 152884857 152884857 A C RAP2B 3'UTR 0.24 TCGA-CC-A8HT-01 3 167083713 167083713 T C ZBBX Silent p.Q78Q 0.27 TCGA-CC-A8HT-01 3 169574626 169574626 C T LRRC31 Silent p.E174E 0.22 TCGA-CC-A8HT-01 3 170198647 170198647 C A SLC7A14 Missense_Mutation p.G475V 0.36 tolerated(0.51) benign(0.001) TCGA-CC-A8HT-01 3 195101743 195101743 G T ACAP2 Missense_Mutation p.H94N 0.25 deleterious(0.03) possibly_damaging(0.515) TCGA-CC-A8HT-01 3 38616808 38616808 G A SCN5A Silent p.L1216L 0.26 TCGA-CC-A8HT-01 3 44285485 44285485 A G TOPAZ1 Missense_Mutation p.Y496C 0.31 tolerated(0.32) benign(0.002) TCGA-CC-A8HT-01 3 49691918 49691918 C T BSN Silent p.C1643C 0.24 TCGA-CC-A8HT-01 3 49692087 49692087 C G BSN Missense_Mutation p.L1700V 0.24 unknown(0) TCGA-CC-A8HT-01 3 52183235 52183235 C A POC1A Missense_Mutation p.R149L 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-CC-A8HT-01 3 52786310 52786310 C A NEK4 Missense_Mutation p.G336C 0.25 tolerated(0.3) benign(0.003) TCGA-CC-A8HT-01 3 62358201 62358201 C G FEZF2 Missense_Mutation p.G115R 0.22 tolerated_low_confidence(0.39) probably_damaging(0.989) TCGA-CC-A8HT-01 3 65365036 65365036 C T MAGI1 Silent p.V965V 0.24 TCGA-CC-A8HT-01 3 9485064 9485064 G A SETD5 Missense_Mutation p.E384K 0.31 deleterious(0) probably_damaging(0.999) TCGA-CC-A8HT-01 3 97251373 97251373 G C EPHA6 Missense_Mutation p.G791A 0.26 deleterious(0) probably_damaging(0.999) TCGA-CC-A8HT-01 3 97251374 97251374 G T EPHA6 Silent p.G791G 0.25 TCGA-CC-A8HT-01 3 98216699 98216699 A T OR5K2 Missense_Mutation p.M59L 0.32 deleterious(0) benign(0.178) TCGA-CC-A8HT-01 4 100228991 100228991 A G ADH1B 3'UTR 0.30 TCGA-CC-A8HT-01 4 113540196 113540196 C T C4orf21 Silent p.Q334Q 0.29 TCGA-CC-A8HT-01 4 126238464 126238464 C T FAT4 Missense_Mutation p.P300S 0.17 probably_damaging(1) TCGA-CC-A8HT-01 4 159814823 159814823 T G C4orf45 3'UTR 0.15 TCGA-CC-A8HT-01 4 159836450 159836450 G T C4orf45 Missense_Mutation p.H140N 0.21 tolerated(0.88) benign(0.011) TCGA-CC-A8HT-01 4 187628856 187628856 A G FAT1 Missense_Mutation p.V709A 0.23 benign(0.042) TCGA-CC-A8HT-01 4 55598097 55598097 A G KIT Missense_Mutation p.D765G 0.16 deleterious(0) possibly_damaging(0.893) TCGA-CC-A8HT-01 4 70810724 70810724 T C CSN1S1 Splice_Site p.X186_splice 0.29 TCGA-CC-A8HT-01 4 71698027 71698027 C A GRSF1 Missense_Mutation p.A271S 0.20 tolerated(0.96) benign(0.184) TCGA-CC-A8HT-01 4 74285989 74285989 G T ALB Missense_Mutation p.A602S 0.21 tolerated(0.93) benign(0.001) TCGA-CC-A8HT-01 4 77020195 77020195 C A ART3 Intron 0.29 TCGA-CC-A8HT-01 4 79387360 79387360 A C FRAS1 Splice_Site p.X2344_splice 0.18 TCGA-CC-A8HT-01 4 8229789 8229789 A G SH3TC1 Missense_Mutation p.T790A 0.30 tolerated(0.7) benign(0) TCGA-CC-A8HT-01 4 8293260 8293260 T A HTRA3 Missense_Mutation p.M291K 0.31 deleterious(0) probably_damaging(0.988) TCGA-CC-A8HT-01 4 95507590 95507590 G A PDLIM5 Silent p.K202K 0.17 TCGA-CC-A8HT-01 5 127680112 127680112 C A FBN2 Missense_Mutation p.G1103V 0.27 deleterious(0) probably_damaging(1) TCGA-CC-A8HT-01 5 140596264 140596264 A G PCDHB13 3'UTR 0.26 TCGA-CC-A8HT-01 5 148753864 148753864 C G IL17B 3'UTR 0.16 TCGA-CC-A8HT-01 5 149580667 149580667 G T SLC6A7 Missense_Mutation p.A247S 0.26 deleterious(0) probably_damaging(0.989) TCGA-CC-A8HT-01 5 156378589 156378589 G T TIMD4 Missense_Mutation p.L205I 0.30 tolerated(0.13) possibly_damaging(0.787) TCGA-CC-A8HT-01 5 156770032 156770032 C A FNDC9 Missense_Mutation p.R171S 0.25 tolerated(0.47) benign(0.053) TCGA-CC-A8HT-01 5 159519263 159519263 A C PWWP2A 3'UTR 0.22 TCGA-CC-A8HT-01 5 161116767 161116767 A T GABRA6 Missense_Mutation p.T219S 0.20 tolerated(0.25) possibly_damaging(0.848) TCGA-CC-A8HT-01 5 161318012 161318012 C A GABRA1 Missense_Mutation p.S271Y 0.25 deleterious(0) possibly_damaging(0.761) TCGA-CC-A8HT-01 5 169494671 169494671 G T DOCK2 Missense_Mutation p.G1542V 0.24 deleterious(0) probably_damaging(1) TCGA-CC-A8HT-01 5 175995968 175995968 A G CDHR2 Missense_Mutation p.Y91C 0.28 tolerated(0.17) possibly_damaging(0.571) TCGA-CC-A8HT-01 5 31553188 31553188 G C C5orf22 3'UTR 0.33 TCGA-CC-A8HT-01 5 3601294 3601294 C T IRX1 3'UTR 0.29 TCGA-CC-A8HT-01 5 5232631 5232631 T C ADAMTS16 Splice_Site p.X617_splice 0.36 TCGA-CC-A8HT-01 5 64748039 64748039 G T ADAMTS6 Missense_Mutation p.A283D 0.28 deleterious(0) probably_damaging(1) TCGA-CC-A8HT-01 6 10430233 10430233 G T LINC00518 RNA 0.26 TCGA-CC-A8HT-01 6 107390740 107390740 T C BEND3 Missense_Mutation p.D552G 0.28 deleterious(0.02) benign(0.274) TCGA-CC-A8HT-01 6 152690719 152690719 C - SYNE1 Frame_Shift_Del p.V3180* 0.16 TCGA-CC-A8HT-01 6 154412084 154412084 T C OPRM1 Intron 0.24 TCGA-CC-A8HT-01 6 26637863 26637863 C A ZNF322 Missense_Mutation p.D307Y 0.10 tolerated(0.38) benign(0.248) TCGA-CC-A8HT-01 6 31557387 31557387 T C NCR3 Missense_Mutation p.T138A 0.43 tolerated(0.13) benign(0.005) TCGA-CC-A8HT-01 6 41122032 41122032 G T TREML1 5'UTR 0.25 TCGA-CC-A8HT-01 6 83846990 83846990 G T DOPEY1 Missense_Mutation p.D1077Y 0.22 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-CC-A8HT-01 7 100683981 100683981 T G MUC17 Missense_Mutation p.M3095R 0.31 possibly_damaging(0.769) TCGA-CC-A8HT-01 7 107556141 107556141 C T DLD Missense_Mutation p.S292F 0.21 deleterious(0.02) possibly_damaging(0.853) TCGA-CC-A8HT-01 7 11076165 11076165 G - PHF14 Frame_Shift_Del p.A575Lfs*46 0.15 TCGA-CC-A8HT-01 7 116759650 116759653 TTCA - ST7 Frame_Shift_Del p.F92Lfs*6 0.22 TCGA-CC-A8HT-01 7 121002990 121002990 C A FAM3C Nonsense_Mutation p.E115* 0.25 TCGA-CC-A8HT-01 7 142563351 142563351 G C EPHB6 Silent p.R356R 0.13 TCGA-CC-A8HT-01 7 142565796 142565796 G A EPHB6 Missense_Mutation p.S636N 0.26 tolerated(0.48) benign(0.005) TCGA-CC-A8HT-01 7 1784532 1784532 G C ELFN1 Missense_Mutation p.E100D 0.22 deleterious(0.01) possibly_damaging(0.747) TCGA-CC-A8HT-01 7 18801900 18801900 G T HDAC9 Missense_Mutation p.G722C 0.18 deleterious(0.01) possibly_damaging(0.772) TCGA-CC-A8HT-01 7 20406804 20406804 G T ITGB8 Missense_Mutation p.R128L 0.36 deleterious(0.01) possibly_damaging(0.5) TCGA-CC-A8HT-01 7 26236448 26236448 C A HNRNPA2B1 Missense_Mutation p.D164Y 0.44 deleterious(0) unknown(0) TCGA-CC-A8HT-01 7 27570940 27570940 A G HIBADH Silent p.A241A 0.21 TCGA-CC-A8HT-01 7 4056922 4056922 C G SDK1 Missense_Mutation p.A847G 0.17 deleterious(0.01) possibly_damaging(0.781) TCGA-CC-A8HT-01 7 75183415 75183415 C A HIP1 Missense_Mutation p.D719Y 0.15 deleterious(0) probably_damaging(0.927) TCGA-CC-A8HT-01 7 82452001 82452001 C A PCLO Missense_Mutation p.M4867I 0.22 unknown(0) TCGA-CC-A8HT-01 7 84636185 84636185 A G SEMA3D Missense_Mutation p.I614T 0.20 tolerated(0.51) benign(0.009) TCGA-CC-A8HT-01 7 95217044 95217044 T A PDK4 Missense_Mutation p.I289F 0.22 deleterious(0) probably_damaging(0.998) TCGA-CC-A8HT-01 8 101011556 101011556 C G RGS22 Missense_Mutation p.R961S 0.24 deleterious(0) possibly_damaging(0.886) TCGA-CC-A8HT-01 8 110408332 110408332 T C PKHD1L1 Silent p.D296D 0.14 TCGA-CC-A8HT-01 8 116599386 116599386 C T TRPS1 Missense_Mutation p.A848T 0.40 tolerated_low_confidence(0.14) possibly_damaging(0.705) TCGA-CC-A8HT-01 8 145746557 145746557 G A LRRC14 Missense_Mutation p.A393T 0.34 tolerated(0.26) benign(0.001) TCGA-CC-A8HT-01 8 37688996 37688996 G A GPR124 Missense_Mutation p.V330M 0.35 deleterious(0) possibly_damaging(0.849) TCGA-CC-A8HT-01 8 48508432 48508432 A T SPIDR Missense_Mutation p.E386V 0.24 deleterious(0) benign(0.106) TCGA-CC-A8HT-01 8 59764302 59764302 C A TOX Missense_Mutation p.M158I 0.21 tolerated(0.28) benign(0) TCGA-CC-A8HT-01 8 69011946 69011946 G T PREX2 Missense_Mutation p.E861D 0.20 tolerated(0.47) benign(0.001) TCGA-CC-A8HT-01 8 82356797 82356797 G T PMP2 Missense_Mutation p.Q96K 0.42 deleterious(0) probably_damaging(0.982) TCGA-CC-A8HT-01 8 82572813 82572813 C T IMPA1 Nonsense_Mutation p.W278* 0.39 TCGA-CC-A8HT-01 8 92407417 92407417 C G SLC26A7 3'Flank 0.28 TCGA-CC-A8HT-01 8 95384520 95384520 G C RAD54B Missense_Mutation p.L871V 0.19 deleterious(0) probably_damaging(0.999) TCGA-CC-A8HT-01 9 104187850 104187850 C T ALDOB Silent p.L228L 0.17 TCGA-CC-A8HT-01 9 139333590 139333590 C A INPP5E Missense_Mutation p.R94S 0.26 deleterious(0) possibly_damaging(0.743) TCGA-CC-A8HT-01 9 21227535 21227535 G A IFNA17 3'UTR 0.22 TCGA-CC-A8HT-01 9 21227536 21227536 G T IFNA17 3'UTR 0.23 TCGA-CC-A8HT-01 9 35044802 35044802 C T C9orf131 Silent p.L726L 0.16 TCGA-CC-A8HT-01 9 5570108 5570108 C A PDCD1LG2 3'UTR 0.18 TCGA-CC-A8HT-01 9 5922618 5922618 T C KIAA2026 Silent p.P1126P 0.22 TCGA-CC-A8HT-01 9 711564 711564 G T KANK1 Missense_Mutation p.Q266H 0.16 deleterious(0) probably_damaging(0.999) TCGA-CC-A8HT-01 9 713298 713298 C A KANK1 Missense_Mutation p.N844K 0.25 deleterious(0.01) possibly_damaging(0.858) TCGA-CC-A8HT-01 9 85882158 85882158 T A FRMD3 Intron 0.28 TCGA-CC-A8HT-01 9 99694422 99694422 G A NUTM2G Silent p.Q145Q 0.10 TCGA-CC-A8HT-01 X 107464563 107464563 A G COL4A6 Silent p.P63P 0.57 TCGA-CC-A8HT-01 X 15809111 15809111 G T ZRSR2 Missense_Mutation p.Q32H 0.48 deleterious(0) unknown(0) TCGA-CC-A8HT-01 X 16707658 16707658 C A CTPS2 Missense_Mutation p.V263L 0.50 tolerated(0.52) benign(0.019) TCGA-CC-A8HT-01 X 30322643 30322643 T C NR0B1 3'UTR 0.58 TCGA-CC-A8HT-01 X 47308079 47308079 A G ZNF41 Missense_Mutation p.F364L 0.06 deleterious(0) probably_damaging(0.983) TCGA-CC-A8HT-01 X 54949458 54949458 C T TRO Nonsense_Mutation p.Q165* 0.54 TCGA-CC-A8HT-01 X 54975557 54975557 G T PFKFB1 Missense_Mutation p.A315D 0.61 probably_damaging(0.91) TCGA-CC-A8HT-01 X 54975558 54975558 C A PFKFB1 Missense_Mutation p.A315S 0.61 benign(0.276) TCGA-CC-A8HT-01 X 70375180 70375180 G C NLGN3 Missense_Mutation p.V232L 0.42 deleterious(0) possibly_damaging(0.531) TCGA-CC-A8HU-01 10 17636234 17636234 G T PTPLA Missense_Mutation p.L252I 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-CC-A8HU-01 10 27536931 27536931 A G RP11-85G18.6 Intron 0.14 TCGA-CC-A8HU-01 10 6154319 6154319 A G RBM17 Missense_Mutation p.E284G 0.39 tolerated(0.2) benign(0) TCGA-CC-A8HU-01 10 62648855 62648855 A G RHOBTB1 Missense_Mutation p.F191L 0.34 tolerated(0.58) possibly_damaging(0.654) TCGA-CC-A8HU-01 10 79397504 79397504 C T KCNMA1 5'Flank 0.19 TCGA-CC-A8HU-01 10 89505887 89505887 C T PAPSS2 3'UTR 0.18 TCGA-CC-A8HU-01 10 95326438 95326438 A T FFAR4 5'UTR 0.56 TCGA-CC-A8HU-01 10 96066392 96066392 A G PLCE1 Missense_Mutation p.N1944S 0.16 tolerated(0.27) benign(0.126) TCGA-CC-A8HU-01 11 106810453 106810453 A T GUCY1A2 Silent p.P313P 0.82 TCGA-CC-A8HU-01 11 107526740 107526740 C G ELMOD1 Missense_Mutation p.F260L 0.88 tolerated(0.84) benign(0.004) TCGA-CC-A8HU-01 11 114271206 114271206 C T RBM7 5'UTR 0.67 TCGA-CC-A8HU-01 11 1156265 1156265 T G MUC5AC Splice_Site p.X196_splice 0.39 TCGA-CC-A8HU-01 11 119025505 119025505 G T ABCG4 Missense_Mutation p.G189V 0.88 deleterious(0) probably_damaging(0.996) TCGA-CC-A8HU-01 11 133794761 133794761 C T IGSF9B Silent p.Q691Q 0.86 TCGA-CC-A8HU-01 11 26734192 26734192 T C SLC5A12 Missense_Mutation p.Q134R 0.46 tolerated(0.06) probably_damaging(0.999) TCGA-CC-A8HU-01 11 45949843 45949843 C T GYLTL1B Nonsense_Mutation p.R624* 0.58 TCGA-CC-A8HU-01 11 65403015 65403015 G T PCNXL3 Missense_Mutation p.V1734L 0.89 deleterious(0.04) probably_damaging(0.994) TCGA-CC-A8HU-01 11 71277043 71277043 G T KRTAP5-10 Missense_Mutation p.C137F 0.56 unknown(0) TCGA-CC-A8HU-01 11 75139638 75139638 G T KLHL35 Silent p.I305I 0.88 TCGA-CC-A8HU-01 11 92532846 92532846 A T FAT3 Missense_Mutation p.I2223F 0.75 possibly_damaging(0.555) TCGA-CC-A8HU-01 12 14928690 14928690 A G H2AFJ 3'UTR 0.25 TCGA-CC-A8HU-01 12 94692459 94692459 C T PLXNC1 Missense_Mutation p.P1376S 0.19 deleterious(0.01) probably_damaging(0.954) TCGA-CC-A8HU-01 13 103338746 103338746 C T METTL21C Missense_Mutation p.D144N 0.17 deleterious(0.05) probably_damaging(0.974) TCGA-CC-A8HU-01 13 21306081 21306081 T A N6AMT2 Missense_Mutation p.D136V 0.04 deleterious(0) probably_damaging(1) TCGA-CC-A8HU-01 13 21563118 21563118 G A LATS2 Silent p.Y267Y 0.02 TCGA-CC-A8HU-01 13 48881475 48881475 T A RB1 Missense_Mutation p.I66K 0.76 deleterious(0) benign(0.109) TCGA-CC-A8HU-01 13 48881477 48881477 C G RB1 Missense_Mutation p.P67A 0.78 tolerated(0.18) benign(0.084) TCGA-CC-A8HU-01 14 102467511 102467511 C T DYNC1H1 Silent p.S1405S 0.55 TCGA-CC-A8HU-01 14 24711153 24711153 C T TINF2 Silent p.L80L 0.40 TCGA-CC-A8HU-01 14 24884995 24884995 C T NYNRIN Missense_Mutation p.P1347L 0.51 deleterious_low_confidence(0.04) benign(0.037) TCGA-CC-A8HU-01 15 22070562 22070562 G T POTEB Silent p.I331I 0.25 TCGA-CC-A8HU-01 15 24927128 24927128 G A NPAP1 3'UTR 0.48 TCGA-CC-A8HU-01 15 37186936 37186936 T C MEIS2 Intron 0.48 TCGA-CC-A8HU-01 15 71305223 71305225 TCG - LRRC49 In_Frame_Del p.R564del 0.42 TCGA-CC-A8HU-01 15 76632778 76632778 G T ISL2 Missense_Mutation p.V225L 0.41 deleterious(0.04) possibly_damaging(0.78) TCGA-CC-A8HU-01 17 33319683 33319683 C T LIG3 Missense_Mutation p.S476L 0.36 deleterious(0.01) benign(0.068) TCGA-CC-A8HU-01 17 33520198 33520198 A G SLC35G3 3'UTR 0.45 TCGA-CC-A8HU-01 17 38230674 38230674 G - THRA 5'UTR 0.12 TCGA-CC-A8HU-01 17 39316584 39316584 G A KRTAP4-4 Silent p.C120C 0.48 TCGA-CC-A8HU-01 17 54981814 54981814 T G TRIM25 Missense_Mutation p.Q243H 0.34 tolerated(0.08) benign(0.02) TCGA-CC-A8HU-01 17 57215151 57215151 C T SKA2 Intron 0.31 TCGA-CC-A8HU-01 17 65362710 65362710 G T PSMD12 5'UTR 0.58 TCGA-CC-A8HU-01 17 72218751 72218751 C A TTYH2 Missense_Mutation p.S86Y 0.24 tolerated(0.14) possibly_damaging(0.905) TCGA-CC-A8HU-01 17 7577534 7577534 C A TP53 Missense_Mutation p.R249S 0.76 deleterious(0) probably_damaging(0.994) TCGA-CC-A8HU-01 17 76503830 76503830 G T DNAH17 Missense_Mutation p.P1428T 0.65 benign(0.005) TCGA-CC-A8HU-01 17 7760598 7760598 G C LSMD1 Missense_Mutation p.C48W 0.81 tolerated_low_confidence(0.05) benign(0.014) TCGA-CC-A8HU-01 17 79082830 79082831 AG - BAIAP2 Intron 0.31 TCGA-CC-A8HU-01 17 80013670 80013670 T C GPS1 Missense_Mutation p.L308P 0.06 tolerated(0.21) benign(0.003) TCGA-CC-A8HU-01 18 32888451 32888451 A G ZNF271 RNA 0.40 TCGA-CC-A8HU-01 18 34385439 34385439 C A TPGS2 Missense_Mutation p.A94S 0.45 tolerated(0.17) benign(0.098) TCGA-CC-A8HU-01 19 12244637 12244637 T C ZNF20 Missense_Mutation p.T122A 0.44 tolerated(0.1) benign(0) TCGA-CC-A8HU-01 19 15224669 15224669 C T SYDE1 Silent p.D701D 0.21 TCGA-CC-A8HU-01 19 35862352 35862352 C G GPR42 Missense_Mutation p.L31V 0.35 tolerated(0.86) probably_damaging(0.999) TCGA-CC-A8HU-01 19 39926515 39926515 C A RPS16 Silent p.L7L 0.71 TCGA-CC-A8HU-01 19 40377204 40377204 G T FCGBP Missense_Mutation p.L3740M 0.33 possibly_damaging(0.887) TCGA-CC-A8HU-01 19 687062 687062 C A PRSS57 Nonsense_Mutation p.E170* 0.39 TCGA-CC-A8HU-01 1 104297338 104297338 C A AMY1C Missense_Mutation p.L335M 0.15 tolerated(0.22) benign(0.172) TCGA-CC-A8HU-01 1 117559864 117559864 G C CD101 Missense_Mutation p.A461P 0.06 deleterious(0.02) probably_damaging(0.961) TCGA-CC-A8HU-01 1 120839624 120839624 G A FAM72B 5'UTR 0.05 TCGA-CC-A8HU-01 1 148252029 148252029 T A NBPF20 Missense_Mutation p.E4571V 0.03 probably_damaging(0.982) TCGA-CC-A8HU-01 1 156214169 156214169 G T PAQR6 Missense_Mutation p.S180Y 0.26 deleterious_low_confidence(0) benign(0.004) TCGA-CC-A8HU-01 1 160100081 160100081 G T ATP1A2 Nonsense_Mutation p.G551* 0.24 TCGA-CC-A8HU-01 1 167096907 167096907 C T DUSP27 Missense_Mutation p.L847F 0.09 deleterious(0) possibly_damaging(0.793) TCGA-CC-A8HU-01 1 176759102 176759102 G A PAPPA2 Missense_Mutation p.E1625K 0.29 tolerated(0.68) benign(0.08) TCGA-CC-A8HU-01 1 179564900 179564900 A T TDRD5 Nonsense_Mutation p.K260* 0.30 TCGA-CC-A8HU-01 1 184764697 184764697 G T FAM129A Missense_Mutation p.T734K 0.64 deleterious_low_confidence(0.04) benign(0.059) TCGA-CC-A8HU-01 1 19455517 19455517 A C UBR4 Silent p.P2986P 0.28 TCGA-CC-A8HU-01 1 198828250 198828250 G A MIR181A1 RNA 0.54 TCGA-CC-A8HU-01 1 200877890 200877890 T G C1orf106 Missense_Mutation p.S203A 0.13 tolerated(0.31) benign(0.006) TCGA-CC-A8HU-01 1 207649761 207649761 A G CR2 Missense_Mutation p.K967E 0.32 tolerated(0.11) benign(0.16) TCGA-CC-A8HU-01 1 236925852 236925852 G A ACTN2 Missense_Mutation p.G873D 0.59 tolerated(0.96) benign(0.075) TCGA-CC-A8HU-01 1 23763634 23763634 C A ASAP3 Missense_Mutation p.C444F 0.36 deleterious(0) probably_damaging(0.995) TCGA-CC-A8HU-01 1 24080866 24080866 G A TCEB3 Silent p.V595V 0.31 TCGA-CC-A8HU-01 1 24181042 24181042 C A FUCA1 Silent p.V259V 0.52 TCGA-CC-A8HU-01 1 242052844 242052844 A G EXO1 Missense_Mutation p.E828G 0.31 tolerated(0.09) benign(0.055) TCGA-CC-A8HU-01 1 248685216 248685216 A T OR2G6 Missense_Mutation p.K90I 0.28 deleterious(0) probably_damaging(0.986) TCGA-CC-A8HU-01 1 43212987 43212987 C T LEPRE1 Missense_Mutation p.A671T 0.44 deleterious(0.01) probably_damaging(0.982) TCGA-CC-A8HU-01 20 23966368 23966368 T C GGTLC1 Missense_Mutation p.E156G 0.65 deleterious(0.02) benign(0.219) TCGA-CC-A8HU-01 20 30818724 30818724 A G POFUT1 Missense_Mutation p.M280V 0.04 tolerated(0.51) benign(0.003) TCGA-CC-A8HU-01 20 45170022 45170022 C A OCSTAMP Missense_Mutation p.R531L 0.43 tolerated_low_confidence(0.28) benign(0) TCGA-CC-A8HU-01 20 45607111 45607111 C T EYA2 Intron 0.38 TCGA-CC-A8HU-01 20 57429286 57429286 C T GNAS Silent p.P322P 0.52 TCGA-CC-A8HU-01 20 60318655 60318655 A G CDH4 Missense_Mutation p.Q69R 0.23 tolerated(0.35) benign(0.005) TCGA-CC-A8HU-01 20 9495353 9495353 C A LAMP5 5'UTR 0.40 TCGA-CC-A8HU-01 21 41033441 41033441 G T B3GALT5 3'UTR 0.05 TCGA-CC-A8HU-01 21 47976001 47976001 G T DIP2A Silent p.V1165V 0.26 TCGA-CC-A8HU-01 22 16287880 16287880 C A POTEH Silent p.V2V 0.23 TCGA-CC-A8HU-01 22 26702012 26702012 C G SEZ6L Missense_Mutation p.N472K 0.40 deleterious(0.01) possibly_damaging(0.794) TCGA-CC-A8HU-01 22 38122331 38122331 G A TRIOBP Silent p.A1256A 0.54 TCGA-CC-A8HU-01 22 42273342 42273342 C G SREBF2 Missense_Mutation p.S499C 0.56 deleterious(0) possibly_damaging(0.738) TCGA-CC-A8HU-01 2 110935918 110935918 C T NPHP1 Intron 0.62 TCGA-CC-A8HU-01 2 128255759 128255759 C G IWS1 Missense_Mutation p.A508P 0.44 deleterious(0.02) possibly_damaging(0.542) TCGA-CC-A8HU-01 2 148684720 148684736 ATGTGTAGGTGAAAGAA - ACVR2A Frame_Shift_Del p.C474Yfs*26 0.39 TCGA-CC-A8HU-01 2 219878253 219878253 G T CCDC108 Silent p.G1278G 0.49 TCGA-CC-A8HU-01 2 239184411 239184411 C A PER2 Missense_Mutation p.A141S 0.49 deleterious(0) probably_damaging(0.998) TCGA-CC-A8HU-01 2 27804119 27804119 C T C2orf16 Silent p.N1560N 0.51 TCGA-CC-A8HU-01 2 39046259 39046261 CTT - DHX57 In_Frame_Del p.E1106del 0.34 TCGA-CC-A8HU-01 2 43937431 43937431 G A PLEKHH2 Missense_Mutation p.V726I 0.39 tolerated(0.1) possibly_damaging(0.759) TCGA-CC-A8HU-01 2 55186295 55186295 C A EML6 Missense_Mutation p.H1584N 0.52 tolerated(0.34) benign(0.008) TCGA-CC-A8HU-01 2 68389783 68389783 T C PNO1 Missense_Mutation p.V203A 0.17 deleterious(0) probably_damaging(0.995) TCGA-CC-A8HU-01 2 89513063 89513063 G T IGKV1-27 Missense_Mutation p.P66T 0.53 deleterious(0.01) benign(0.213) TCGA-CC-A8HU-01 3 124483275 124483275 T - ITGB5 Frame_Shift_Del p.K756Sfs*76 0.21 TCGA-CC-A8HU-01 3 134346635 134346635 G T KY Missense_Mutation p.N121K 0.33 tolerated_low_confidence(0.19) benign(0.002) TCGA-CC-A8HU-01 3 156729254 156729254 C A LEKR1 Missense_Mutation p.L388I 0.32 tolerated(0.07) possibly_damaging(0.567) TCGA-CC-A8HU-01 3 165503966 165503966 T C BCHE Missense_Mutation p.T551A 0.53 deleterious(0.03) benign(0.005) TCGA-CC-A8HU-01 3 50374824 50374824 T G RASSF1 Intron 0.38 TCGA-CC-A8HU-01 4 71027333 71027333 C A C4orf40 3'UTR 0.47 TCGA-CC-A8HU-01 4 99823068 99823068 A C EIF4E Silent p.V28V 0.81 TCGA-CC-A8HU-01 5 140529886 140529886 C T PCDHB6 Silent p.F16F 0.26 TCGA-CC-A8HU-01 5 177548620 177548620 A G N4BP3 Missense_Mutation p.E418G 0.45 deleterious(0) probably_damaging(0.998) TCGA-CC-A8HU-01 6 116427435 116427435 T G NT5DC1 Missense_Mutation p.L41R 0.42 deleterious(0) probably_damaging(0.993) TCGA-CC-A8HU-01 6 39271872 39271872 G T KCNK17 Silent p.G183G 0.52 TCGA-CC-A8HU-01 6 39607459 39607459 C T KIF6 Missense_Mutation p.G109E 0.58 deleterious(0) probably_damaging(1) TCGA-CC-A8HU-01 7 127347629 127347629 G T SND1 Missense_Mutation p.R322S 0.16 deleterious(0) possibly_damaging(0.673) TCGA-CC-A8HU-01 7 131848926 131848926 C T PLXNA4 Missense_Mutation p.R1492H 0.23 deleterious(0) possibly_damaging(0.897) TCGA-CC-A8HU-01 7 1785060 1785060 G T ELFN1 Silent p.P276P 0.23 TCGA-CC-A8HU-01 7 21678600 21678600 A T DNAH11 Nonsense_Mutation p.K1626* 0.50 TCGA-CC-A8HU-01 7 21985480 21985480 C A CDCA7L 5'UTR 0.46 TCGA-CC-A8HU-01 7 33945272 33945272 G T BMPER Missense_Mutation p.R16L 0.35 tolerated_low_confidence(0.34) benign(0) TCGA-CC-A8HU-01 7 94294941 94294941 C A PEG10 3'UTR 0.10 TCGA-CC-A8HU-01 7 96324128 96324128 T A SHFM1 Missense_Mutation p.D51V 0.53 deleterious(0) benign(0.394) TCGA-CC-A8HU-01 8 109796520 109796520 C T TMEM74 Missense_Mutation p.E270K 0.10 tolerated(0.23) benign(0.433) TCGA-CC-A8HU-01 8 144991361 144991361 C T PLEC Missense_Mutation p.A4347T 0.08 benign(0.079) TCGA-CC-A8HU-01 8 2813254 2813254 G C CSMD1 Missense_Mutation p.A3284G 0.83 benign(0.23) TCGA-CC-A8HU-01 8 7308212 7308212 C G SPAG11B 3'UTR 0.19 TCGA-CC-A8HU-01 9 127231771 127231771 G A GPR144 Missense_Mutation p.A835T 0.04 tolerated(0.06) benign(0.004) TCGA-CC-A8HU-01 9 131513803 131513803 A C ZER1 Missense_Mutation p.I309M 0.09 tolerated(0.17) benign(0.121) TCGA-CC-A8HU-01 9 139739752 139739752 G T C9orf172 Missense_Mutation p.A296S 0.92 tolerated(0.83) benign(0.019) TCGA-CC-A8HU-01 X 114426238 114426238 G T RBMXL3 Missense_Mutation p.G745V 0.87 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-CC-A8HU-01 X 11790751 11790751 G A MSL3 Missense_Mutation p.E465K 0.60 deleterious(0) probably_damaging(0.989) TCGA-CC-A8HU-01 X 13338283 13338283 A T ATXN3L 5'UTR 0.62 TCGA-CC-A8HU-01 X 152830535 152830535 C T ATP2B3 Missense_Mutation p.R1106W 0.87 deleterious(0.02) probably_damaging(1) TCGA-CC-A8HU-01 X 23928463 23928463 C G CXorf58 Nonsense_Mutation p.S15* 0.54 TCGA-CC-A8HU-01 X 51638488 51638488 T C MAGED1 Missense_Mutation p.S185P 0.24 tolerated_low_confidence(0.11) unknown(0) TCGA-CC-A8HU-01 X 54013589 54013589 G A PHF8 Silent p.P675P 0.56 TCGA-CC-A8HU-01 X 66765551 66765551 C A AR Missense_Mutation p.A188D 0.33 deleterious_low_confidence(0) possibly_damaging(0.635) TCGA-CC-A8HU-01 X 66765552 66765552 C A AR Silent p.A188A 0.33 TCGA-CC-A8HU-01 X 70356173 70356173 C G MED12 Missense_Mutation p.L1690V 0.56 benign(0.027) TCGA-CC-A8HU-01 X 70598216 70598216 T A TAF1 Silent p.G375G 0.25 TCGA-CC-A8HV-01 10 101992888 101992888 G A CWF19L1 3'UTR 0.50 TCGA-CC-A8HV-01 10 105139385 105139385 A T TAF5 Missense_Mutation p.K378N 0.25 deleterious(0.02) probably_damaging(0.933) TCGA-CC-A8HV-01 10 17275583 17275583 T A VIM Intron 0.32 TCGA-CC-A8HV-01 10 72432599 72432599 T G ADAMTS14 Missense_Mutation p.L14W 0.08 tolerated(0.13) unknown(0) TCGA-CC-A8HV-01 10 7679256 7679256 C G ITIH5 Missense_Mutation p.G196A 0.22 tolerated(0.14) benign(0.359) TCGA-CC-A8HV-01 10 88259625 88259625 T G WAPAL Missense_Mutation p.S459R 0.16 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-CC-A8HV-01 11 119244001 119244001 G T USP2 Missense_Mutation p.R64S 0.77 deleterious_low_confidence(0.04) benign(0) TCGA-CC-A8HV-01 11 1269383 1269383 C T MUC5B Missense_Mutation p.T3758M 0.31 unknown(0) TCGA-CC-A8HV-01 11 129827684 129827684 G A PRDM10 Missense_Mutation p.P64L 0.79 deleterious_low_confidence(0.01) benign(0.242) TCGA-CC-A8HV-01 11 14096928 14096928 A G SPON1 RNA 0.42 TCGA-CC-A8HV-01 11 16863174 16863174 G A PLEKHA7 Silent p.A264A 0.41 TCGA-CC-A8HV-01 11 219012 219012 G A SIRT3 Silent p.A333A 0.37 TCGA-CC-A8HV-01 11 44089305 44089305 A T ACCS Missense_Mutation p.K43M 0.28 tolerated(0.05) possibly_damaging(0.717) TCGA-CC-A8HV-01 11 5221636 5221636 G A OR51V1 Nonsense_Mutation p.R99* 0.38 TCGA-CC-A8HV-01 11 58318615 58318615 G A LPXN Nonsense_Mutation p.Q142* 0.20 TCGA-CC-A8HV-01 11 60641131 60641131 C A ZP1 Nonsense_Mutation p.Y485* 0.39 TCGA-CC-A8HV-01 11 63533563 63533563 T C C11orf95 RNA 0.46 TCGA-CC-A8HV-01 11 64879378 64879378 G T TM7SF2 5'UTR 0.35 TCGA-CC-A8HV-01 11 6977365 6977365 A G ZNF215 Missense_Mutation p.K386R 0.26 tolerated(0.11) benign(0.019) TCGA-CC-A8HV-01 11 69949238 69949238 G T ANO1 Nonsense_Mutation p.E170* 0.20 TCGA-CC-A8HV-01 12 108150646 108150646 C T PRDM4 Silent p.L36L 0.17 TCGA-CC-A8HV-01 12 110765661 110765661 C T ATP2A2 Missense_Mutation p.P312S 0.15 deleterious(0.03) possibly_damaging(0.817) TCGA-CC-A8HV-01 12 112681775 112681775 C T HECTD4 Missense_Mutation p.A1372T 0.20 benign(0.131) TCGA-CC-A8HV-01 12 115109713 115109713 T A TBX3 Missense_Mutation p.Q722L 0.17 deleterious(0) probably_damaging(0.996) TCGA-CC-A8HV-01 12 124831161 124831161 C T NCOR2 Silent p.T1436T 0.19 TCGA-CC-A8HV-01 12 28702280 28702280 C G CCDC91 3'UTR 0.28 TCGA-CC-A8HV-01 12 3000079 3000079 G A TULP3 5'UTR 0.34 TCGA-CC-A8HV-01 12 41831572 41831572 C A PDZRN4 Intron 0.40 TCGA-CC-A8HV-01 12 58087962 58087962 G T OS9 Silent p.L6L 0.37 TCGA-CC-A8HV-01 12 66638955 66638955 C G IRAK3 Silent p.P409P 0.18 TCGA-CC-A8HV-01 12 91502117 91502117 T A LUM Missense_Mutation p.N214Y 0.52 tolerated(1) benign(0.006) TCGA-CC-A8HV-01 13 103395550 103395550 G T LINC00283 RNA 0.05 TCGA-CC-A8HV-01 13 114083321 114083321 G A ADPRHL1 Missense_Mutation p.R198W 0.67 tolerated(0.06) possibly_damaging(0.773) TCGA-CC-A8HV-01 13 72063270 72063270 C T DACH1 Silent p.P529P 0.61 TCGA-CC-A8HV-01 13 77700507 77700507 T A MYCBP2 Missense_Mutation p.R2572S 0.60 probably_damaging(0.961) TCGA-CC-A8HV-01 14 104641670 104641670 G A KIF26A Missense_Mutation p.E849K 0.75 deleterious(0.01) possibly_damaging(0.824) TCGA-CC-A8HV-01 14 106692202 106692202 C A IGHV3-21 5'UTR 0.67 TCGA-CC-A8HV-01 14 86087999 86087999 C A FLRT2 Silent p.V47V 0.62 TCGA-CC-A8HV-01 14 93399004 93399004 C A CHGA Missense_Mutation p.D366E 0.60 tolerated(0.21) benign(0.038) TCGA-CC-A8HV-01 15 20649565 20649565 T C HERC2P3 RNA 0.23 TCGA-CC-A8HV-01 15 29406112 29406112 C T APBA2 Nonsense_Mutation p.R691* 0.42 TCGA-CC-A8HV-01 15 35045139 35045139 A - GJD2 Frame_Shift_Del p.L169* 0.20 TCGA-CC-A8HV-01 15 42058313 42058313 G T MGA Missense_Mutation p.S2678I 0.38 deleterious(0.01) benign(0.258) TCGA-CC-A8HV-01 15 55912049 55912049 G A PRTG 3'UTR 0.50 TCGA-CC-A8HV-01 15 74328285 74328285 G T PML Intron 0.27 TCGA-CC-A8HV-01 15 77310799 77310799 G T PSTPIP1 Missense_Mutation p.A47S 0.31 deleterious(0) probably_damaging(0.971) TCGA-CC-A8HV-01 15 85399661 85399661 G A ALPK3 Silent p.S766S 0.26 TCGA-CC-A8HV-01 16 21156684 21156684 G C DNAH3 Missense_Mutation p.T89R 0.67 tolerated_low_confidence(0.15) benign(0.259) TCGA-CC-A8HV-01 16 2218152 2218152 G T TRAF7 Missense_Mutation p.D72Y 0.68 deleterious_low_confidence(0.01) possibly_damaging(0.786) TCGA-CC-A8HV-01 16 633537 633537 A C PIGQ Missense_Mutation p.K729T 0.75 tolerated_low_confidence(0.47) benign(0.403) TCGA-CC-A8HV-01 16 67100668 67100668 G A CBFB Missense_Mutation p.M122I 0.36 tolerated(0.6) benign(0.001) TCGA-CC-A8HV-01 16 67265130 67265130 G A FHOD1 Silent p.D876D 0.77 TCGA-CC-A8HV-01 16 89986636 89986636 C G MC1R 3'UTR 0.57 TCGA-CC-A8HV-01 17 1945139 1945139 G A DPH1 Silent p.P440P 0.80 TCGA-CC-A8HV-01 17 26965006 26965006 T G KIAA0100 Missense_Mutation p.Q540P 0.20 tolerated(0.13) benign(0.012) TCGA-CC-A8HV-01 17 36352471 36352471 C A RP11-1407O15.2 Missense_Mutation p.S439I 0.04 TCGA-CC-A8HV-01 17 37947672 37947681 AATGTGTCCT - IKZF3 Frame_Shift_Del p.R194Lfs*63 0.12 TCGA-CC-A8HV-01 17 40330149 40330149 C A KCNH4 Missense_Mutation p.R185L 0.35 deleterious(0.01) benign(0.043) TCGA-CC-A8HV-01 17 42449652 42449652 G A ITGA2B 3'UTR 0.24 TCGA-CC-A8HV-01 17 45669377 45669377 G T NPEPPS Missense_Mutation p.S439I 0.05 tolerated(0.06) possibly_damaging(0.786) TCGA-CC-A8HV-01 17 60769996 60769996 G T MRC2 3'UTR 0.33 TCGA-CC-A8HV-01 17 72519709 72519709 A G CD300LB Intron 0.45 TCGA-CC-A8HV-01 17 7577534 7577534 C A TP53 Missense_Mutation p.R249S 0.72 deleterious(0) probably_damaging(0.994) TCGA-CC-A8HV-01 17 79096446 79096446 C T AATK Silent p.A430A 0.57 TCGA-CC-A8HV-01 17 7990900 7990900 C T ALOX12B 5'UTR 0.92 TCGA-CC-A8HV-01 18 67997011 67997011 G C SOCS6 3'UTR 0.39 TCGA-CC-A8HV-01 19 11446411 11446411 G C RAB3D Missense_Mutation p.R93G 0.12 deleterious(0) probably_damaging(0.998) TCGA-CC-A8HV-01 19 12936889 12936889 C A RTBDN Intron 0.30 TCGA-CC-A8HV-01 19 1497526 1497526 C T REEP6 3'UTR 0.36 TCGA-CC-A8HV-01 19 16926064 16926064 A T NWD1 3'UTR 0.60 TCGA-CC-A8HV-01 19 17452488 17452488 C T GTPBP3 Silent p.F517F 0.08 TCGA-CC-A8HV-01 19 18896509 18896509 C T COMP Missense_Mutation p.D548N 0.37 deleterious(0) probably_damaging(0.995) TCGA-CC-A8HV-01 19 36884088 36884088 T C ZFP82 Missense_Mutation p.H385R 0.29 deleterious(0.02) benign(0.41) TCGA-CC-A8HV-01 19 47593287 47593287 C T ZC3H4 Missense_Mutation p.D218N 0.38 probably_damaging(0.986) TCGA-CC-A8HV-01 19 50193723 50193723 C A ADM5 Missense_Mutation p.F145L 0.55 tolerated_low_confidence(0.33) possibly_damaging(0.682) TCGA-CC-A8HV-01 19 50549299 50549299 C T ZNF473 Silent p.H533H 0.35 TCGA-CC-A8HV-01 19 50753873 50753873 C T MYH14 Silent p.G586G 0.20 TCGA-CC-A8HV-01 19 53454379 53454379 T C ZNF816 Missense_Mutation p.T217A 0.21 tolerated(0.19) benign(0.081) TCGA-CC-A8HV-01 19 55610211 55610211 C T PPP1R12C Missense_Mutation p.D298N 0.18 deleterious(0) probably_damaging(0.981) TCGA-CC-A8HV-01 19 58988826 58988826 G T ZNF446 Nonsense_Mutation p.E81* 0.05 TCGA-CC-A8HV-01 1 101006041 101006041 C G GPR88 3'UTR 0.38 TCGA-CC-A8HV-01 1 104297364 104297364 G T AMY1C Missense_Mutation p.M343I 0.17 deleterious(0.01) possibly_damaging(0.904) TCGA-CC-A8HV-01 1 110085966 110085966 G A GPR61 Missense_Mutation p.A108T 0.52 tolerated(0.21) benign(0.002) TCGA-CC-A8HV-01 1 114162434 114162434 A C MAGI3 Missense_Mutation p.I385L 0.33 tolerated(0.78) benign(0.016) TCGA-CC-A8HV-01 1 114380834 114380834 T C PTPN22 Silent p.K396K 0.28 TCGA-CC-A8HV-01 1 116929969 116929969 T C ATP1A1 Silent p.T81T 0.06 TCGA-CC-A8HV-01 1 142699387 142699388 - AA RP11-417J8.6 RNA 0.15 TCGA-CC-A8HV-01 1 1431055 1431055 C T ATAD3B Missense_Mutation p.P602L 0.51 deleterious_low_confidence(0) benign(0.051) TCGA-CC-A8HV-01 1 156376969 156376969 T G C1orf61 Missense_Mutation p.Y109S 0.16 deleterious_low_confidence(0) benign(0.412) TCGA-CC-A8HV-01 1 15653625 15653625 T A FHAD1 Missense_Mutation p.V120D 0.53 deleterious(0) probably_damaging(0.978) TCGA-CC-A8HV-01 1 158654957 158654957 T C SPTA1 Missense_Mutation p.I69V 0.18 deleterious(0.02) benign(0.03) TCGA-CC-A8HV-01 1 15986851 15986851 G A RSC1A1 Missense_Mutation p.S163N 0.24 tolerated(1) benign(0.006) TCGA-CC-A8HV-01 1 160137138 160137138 C A ATP1A4 Missense_Mutation p.A476E 0.13 tolerated(0.79) benign(0.065) TCGA-CC-A8HV-01 1 169700980 169700980 C T SELE Silent p.E175E 0.16 TCGA-CC-A8HV-01 1 170705412 170705412 G T PRRX1 3'UTR 0.09 TCGA-CC-A8HV-01 1 175129943 175129943 C T KIAA0040 Silent p.K69K 0.23 TCGA-CC-A8HV-01 1 196654311 196654311 G T CFH Missense_Mutation p.R303L 0.71 tolerated(0.12) benign(0.031) TCGA-CC-A8HV-01 1 198713253 198713253 C T PTPRC Missense_Mutation p.S923F 0.14 deleterious(0) probably_damaging(0.95) TCGA-CC-A8HV-01 1 201355554 201355554 G T LAD1 Missense_Mutation p.A312D 0.32 tolerated(0.16) benign(0.009) TCGA-CC-A8HV-01 1 223984262 223984262 T C TP53BP2 Missense_Mutation p.Q660R 0.17 tolerated(0.06) benign(0.39) TCGA-CC-A8HV-01 1 224345243 224345243 A G FBXO28 Missense_Mutation p.Q301R 0.12 tolerated(0.22) probably_damaging(0.968) TCGA-CC-A8HV-01 1 228285573 228285573 T G ARF1 Missense_Mutation p.N135K 0.13 tolerated_low_confidence(0.25) benign(0.027) TCGA-CC-A8HV-01 1 231349591 231349591 C T TRIM67 Silent p.T718T 0.17 TCGA-CC-A8HV-01 1 24070016 24070016 A G TCEB3 Missense_Mutation p.Q34R 0.54 tolerated(0.19) possibly_damaging(0.63) TCGA-CC-A8HV-01 1 36551578 36551578 G A TEKT2 Missense_Mutation p.E142K 0.49 tolerated(0.41) benign(0.068) TCGA-CC-A8HV-01 1 40422841 40422841 C T MFSD2A Missense_Mutation p.T59M 0.50 deleterious(0) probably_damaging(1) TCGA-CC-A8HV-01 1 43637224 43637224 A C EBNA1BP2 Silent p.S138S 0.58 TCGA-CC-A8HV-01 1 54871734 54871734 T C SSBP3 5'UTR 0.50 TCGA-CC-A8HV-01 1 54871735 54871735 A G SSBP3 5'UTR 0.50 TCGA-CC-A8HV-01 1 6631179 6631179 C T TAS1R1 Silent p.L134L 0.23 TCGA-CC-A8HV-01 1 78245389 78245389 G C FAM73A Missense_Mutation p.G17R 0.43 deleterious_low_confidence(0) benign(0) TCGA-CC-A8HV-01 1 86965557 86965557 C A CLCA1 Missense_Mutation p.N858K 0.23 deleterious(0) probably_damaging(0.998) TCGA-CC-A8HV-01 1 86965558 86965558 A G CLCA1 Missense_Mutation p.I859V 0.23 tolerated(0.05) benign(0.015) TCGA-CC-A8HV-01 1 89664581 89664581 C A GBP4 5'UTR 0.18 TCGA-CC-A8HV-01 20 33450709 33450709 C G GGT7 Missense_Mutation p.E155D 0.43 tolerated(0.32) benign(0.004) TCGA-CC-A8HV-01 20 33460489 33460489 G A GGT7 Missense_Mutation p.R44C 0.44 deleterious_low_confidence(0) possibly_damaging(0.738) TCGA-CC-A8HV-01 20 34828015 34828015 G T AAR2 Missense_Mutation p.M75I 0.38 tolerated(0.25) benign(0.001) TCGA-CC-A8HV-01 20 44806803 44806803 C A CDH22 Missense_Mutation p.G566V 0.39 deleterious(0.03) possibly_damaging(0.906) TCGA-CC-A8HV-01 20 45905296 45905296 C T ZMYND8 Silent p.Q414Q 0.26 TCGA-CC-A8HV-01 21 39671702 39671702 G A KCNJ15 Silent p.K173K 0.61 TCGA-CC-A8HV-01 22 17308610 17308610 A G HSFY1P1 RNA 0.64 TCGA-CC-A8HV-01 22 18899462 18899462 C T DGCR6 3'UTR 0.70 TCGA-CC-A8HV-01 22 19126677 19126677 C T DGCR14 Missense_Mutation p.A273T 0.52 deleterious(0.01) probably_damaging(0.94) TCGA-CC-A8HV-01 22 38202749 38202749 A G H1F0 3'UTR 0.68 TCGA-CC-A8HV-01 2 155115572 155115572 G T GALNT13 Missense_Mutation p.R299I 0.20 deleterious(0) benign(0.229) TCGA-CC-A8HV-01 2 155711536 155711536 T A KCNJ3 Missense_Mutation p.I406N 0.16 tolerated_low_confidence(0.06) benign(0.429) TCGA-CC-A8HV-01 2 166847916 166847917 - T SCN1A Frame_Shift_Ins p.E1957Rfs*6 0.11 TCGA-CC-A8HV-01 2 170366494 170366494 C T KLHL41 Missense_Mutation p.A69V 0.25 tolerated(0.31) benign(0.064) TCGA-CC-A8HV-01 2 170592146 170592146 A G KLHL23 Missense_Mutation p.T208A 0.15 tolerated(0.22) benign(0.002) TCGA-CC-A8HV-01 2 179330395 179330395 T C FKBP7 3'UTR 0.19 TCGA-CC-A8HV-01 2 179665283 179665283 C T TTN Missense_Mutation p.G141E 0.11 TCGA-CC-A8HV-01 2 185802803 185802803 G A ZNF804A Missense_Mutation p.E894K 0.15 tolerated(0.85) benign(0.037) TCGA-CC-A8HV-01 2 217006004 217006004 A G XRCC5 Missense_Mutation p.T480A 0.31 tolerated(0.3) benign(0.004) TCGA-CC-A8HV-01 2 220283471 220283471 C T DES Missense_Mutation p.A96V 0.19 tolerated(0.1) probably_damaging(1) TCGA-CC-A8HV-01 2 220348192 220348192 G T SPEG Missense_Mutation p.A2003S 0.64 benign(0) TCGA-CC-A8HV-01 2 222294720 222294720 C T EPHA4 Missense_Mutation p.R883H 0.12 deleterious(0.02) possibly_damaging(0.873) TCGA-CC-A8HV-01 2 234465583 234465583 T C USP40 Missense_Mutation p.H167R 0.31 tolerated(0.14) benign(0.316) TCGA-CC-A8HV-01 2 25467443 25467443 C G DNMT3A Missense_Mutation p.E545Q 0.30 deleterious(0.02) benign(0.145) TCGA-CC-A8HV-01 2 26407445 26407445 T A GAREML Missense_Mutation p.L243Q 0.42 deleterious(0.03) probably_damaging(0.999) TCGA-CC-A8HV-01 3 124540166 124540166 G A ITGB5 Silent p.N312N 0.23 TCGA-CC-A8HV-01 3 128181523 128181523 A C DNAJB8 Missense_Mutation p.I189S 0.44 deleterious(0) benign(0.057) TCGA-CC-A8HV-01 3 132071587 132071587 A C ACPP Silent p.L296L 0.29 TCGA-CC-A8HV-01 3 133497483 133497483 G A TF 3'UTR 0.32 TCGA-CC-A8HV-01 3 138289288 138289288 T C CEP70 Missense_Mutation p.N113D 0.46 deleterious(0.01) possibly_damaging(0.731) TCGA-CC-A8HV-01 3 183953088 183953088 G A VWA5B2 Missense_Mutation p.A365T 0.21 tolerated(0.27) benign(0.03) TCGA-CC-A8HV-01 3 196435517 196435517 A T CEP19 Silent p.T8T 0.22 TCGA-CC-A8HV-01 3 44674045 44674045 G A ZNF197 Silent p.L241L 0.54 TCGA-CC-A8HV-01 3 47163348 47163348 T - SETD2 Frame_Shift_Del p.E927Kfs*3 0.30 TCGA-CC-A8HV-01 3 50330774 50330774 C A HYAL3 Missense_Mutation p.S386I 0.34 tolerated(0.28) benign(0.024) TCGA-CC-A8HV-01 3 55052296 55052296 G A CACNA2D3 Missense_Mutation p.R980H 0.35 tolerated(0.11) probably_damaging(0.994) TCGA-CC-A8HV-01 4 1701359 1701359 C G SLBP Missense_Mutation p.R137S 0.86 deleterious(0) possibly_damaging(0.611) TCGA-CC-A8HV-01 4 175225507 175225507 T G CEP44 Missense_Mutation p.M165R 0.68 tolerated(0.05) benign(0.311) TCGA-CC-A8HV-01 4 26661311 26661311 A G TBC1D19 Silent p.V191V 0.69 TCGA-CC-A8HV-01 4 26661312 26661312 A T TBC1D19 Nonsense_Mutation p.K192* 0.71 TCGA-CC-A8HV-01 4 41992532 41992532 G T SLC30A9 5'UTR 0.26 TCGA-CC-A8HV-01 4 47163294 47163294 A C GABRB1 Missense_Mutation p.Q90P 0.54 deleterious(0) probably_damaging(1) TCGA-CC-A8HV-01 4 87556432 87556432 C A PTPN13 Missense_Mutation p.A8D 0.76 deleterious(0) probably_damaging(1) TCGA-CC-A8HV-01 5 109106073 109106073 G T MAN2A1 Missense_Mutation p.D343Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-CC-A8HV-01 5 122372304 122372304 C G PPIC Missense_Mutation p.R6P 0.21 deleterious(0.01) unknown(0) TCGA-CC-A8HV-01 5 137257348 137257348 T C PKD2L2 Missense_Mutation p.L451P 0.50 deleterious(0) probably_damaging(1) TCGA-CC-A8HV-01 5 140626364 140626364 A T PCDHB15 Missense_Mutation p.E406D 0.26 tolerated_low_confidence(0.18) benign(0.007) TCGA-CC-A8HV-01 5 141243510 141243510 C T PCDH1 Missense_Mutation p.D796N 0.18 deleterious(0) probably_damaging(0.999) TCGA-CC-A8HV-01 5 149756046 149756046 T C TCOF1 Silent p.L735L 0.20 TCGA-CC-A8HV-01 5 176721807 176721807 G A NSD1 Missense_Mutation p.D2480N 0.52 deleterious_low_confidence(0.04) benign(0.159) TCGA-CC-A8HV-01 5 36629587 36629587 A G SLC1A3 Missense_Mutation p.M73V 0.19 tolerated(0.07) benign(0.145) TCGA-CC-A8HV-01 5 55111225 55111225 G A DDX4 Missense_Mutation p.V691M 0.44 tolerated(0.27) benign(0.018) TCGA-CC-A8HV-01 5 63256758 63256758 C G HTR1A Missense_Mutation p.W263C 0.31 tolerated(0.21) benign(0.098) TCGA-CC-A8HV-01 5 94001708 94001708 C G ANKRD32 Missense_Mutation p.S504C 0.19 deleterious(0.02) possibly_damaging(0.867) TCGA-CC-A8HV-01 6 105609574 105609574 C A POPDC3 Missense_Mutation p.D71Y 0.40 deleterious(0) possibly_damaging(0.85) TCGA-CC-A8HV-01 6 136597048 136597048 C T BCLAF1 Missense_Mutation p.A539T 0.26 tolerated(0.39) possibly_damaging(0.682) TCGA-CC-A8HV-01 6 31640030 31640030 G T CSNK2B-LY6G5B-1181 3'UTR 0.19 TCGA-CC-A8HV-01 6 38690665 38690665 G A DNAH8 5'Flank 0.56 TCGA-CC-A8HV-01 6 73933531 73933531 C T KHDC1L Silent p.Q109Q 0.43 TCGA-CC-A8HV-01 6 74019519 74019519 C T KHDC1 5'UTR 0.33 TCGA-CC-A8HV-01 6 75866062 75866062 C A COL12A1 Missense_Mutation p.R1054L 0.40 probably_damaging(0.977) TCGA-CC-A8HV-01 7 143701669 143701669 A G OR6B1 Missense_Mutation p.I194V 0.36 tolerated(0.46) benign(0.001) TCGA-CC-A8HV-01 7 149493599 149493599 G A SSPO RNA 0.47 TCGA-CC-A8HV-01 7 15651953 15651953 G T MEOX2 3'UTR 0.46 TCGA-CC-A8HV-01 7 2578351 2578351 G T BRAT1 Silent p.G606G 0.16 TCGA-CC-A8HV-01 7 90896715 90896715 G T FZD1 3'UTR 0.40 TCGA-CC-A8HV-01 7 90896718 90896718 C T FZD1 3'UTR 0.40 TCGA-CC-A8HV-01 8 122627072 122627072 A G HAS2 Silent p.G312G 0.12 TCGA-CC-A8HV-01 8 124267098 124267098 T A ZHX1 Silent p.V363V 0.11 TCGA-CC-A8HV-01 8 124408605 124408605 C A ATAD2 5'UTR 0.77 TCGA-CC-A8HV-01 8 143625812 143625812 A T BAI1 3'UTR 0.15 TCGA-CC-A8HV-01 8 37756665 37756665 C A RAB11FIP1 Missense_Mutation p.G99C 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-CC-A8HV-01 8 67049364 67049364 G T TRIM55 Missense_Mutation p.G181V 0.25 deleterious(0.02) probably_damaging(0.992) TCGA-CC-A8HV-01 8 8185368 8185368 C A SGK223 Missense_Mutation p.G975V 0.69 possibly_damaging(0.708) TCGA-CC-A8HV-01 8 95952161 95952161 C A TP53INP1 Missense_Mutation p.V134L 0.09 tolerated(0.06) benign(0.028) TCGA-CC-A8HV-01 9 115171195 115171195 A G HSDL2 Missense_Mutation p.I97V 0.35 tolerated(0.21) benign(0.03) TCGA-CC-A8HV-01 9 131891300 131891300 G C PPP2R4 Missense_Mutation p.D85H 0.37 deleterious(0) possibly_damaging(0.829) TCGA-CC-A8HV-01 9 21305082 21305082 G C IFNA5 Missense_Mutation p.D58E 0.24 deleterious(0) benign(0.087) TCGA-CC-A8HV-01 9 5922128 5922129 CA - KIAA2026 Frame_Shift_Del p.G1290Sfs*54 0.22 TCGA-CC-A8HV-01 X 105970236 105970236 G A RNF128 Silent p.P31P 0.27 TCGA-CC-A8HV-01 X 133674608 133674608 T C MIR450A2 RNA 0.22 TCGA-CC-A8HV-01 X 148798034 148798034 C G MAGEA11 Missense_Mutation p.N296K 0.19 deleterious(0.02) benign(0.027) TCGA-CC-A8HV-01 X 152710779 152710779 C G TREX2 Missense_Mutation p.R37P 0.47 deleterious(0) probably_damaging(1) TCGA-CC-A8HV-01 X 49047924 49047924 A T SYP Silent p.G304G 0.33 TCGA-CC-A8HV-01 X 54275438 54275438 C A WNK3 Nonsense_Mutation p.E1115* 0.24 TCGA-CC-A8HV-01 X 54475585 54475585 G A FGD1 Silent p.A755A 0.32 TCGA-CC-A8HV-01 X 69419697 69419697 C A DGAT2L6 Missense_Mutation p.L78I 0.20 tolerated(0.3) benign(0.106) TCGA-CC-A8HV-01 X 69509187 69509187 T C PDZD11 Missense_Mutation p.D2G 0.21 tolerated_low_confidence(0.1) benign(0.004) TCGA-CC-A8HV-01 X 76763760 76763760 T A ATRX 3'UTR 0.16 TCGA-CC-A8HV-01 X 78216995 78216995 C A P2RY10 Silent p.S326S 0.45 TCGA-CC-A8HV-01 X 78216996 78216996 C A P2RY10 Missense_Mutation p.R327S 0.45 tolerated(0.13) benign(0.031) TCGA-CC-A9FS-01 10 104678199 104678199 G C CNNM2 5'UTR 0.49 TCGA-CC-A9FS-01 10 118100283 118100283 T G CCDC172 Missense_Mutation p.L68R 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-CC-A9FS-01 10 14478607 14478607 G C MIR1265 RNA 0.30 TCGA-CC-A9FS-01 10 16882501 16882501 G A CUBN Missense_Mutation p.T3287I 0.30 deleterious(0.01) benign(0.347) TCGA-CC-A9FS-01 10 17401546 17401546 C T ST8SIA6 Nonsense_Mutation p.W115* 0.37 TCGA-CC-A9FS-01 10 53227585 53227585 C T PRKG1 Missense_Mutation p.A194V 0.40 deleterious(0) probably_damaging(0.99) TCGA-CC-A9FS-01 10 75434051 75434051 T C AGAP5 3'UTR 0.13 TCGA-CC-A9FS-01 11 101833467 101833467 T C KIAA1377 Silent p.H567H 0.09 TCGA-CC-A9FS-01 11 108018101 108018101 T G ACAT1 Missense_Mutation p.L423R 0.40 deleterious(0) probably_damaging(0.982) TCGA-CC-A9FS-01 11 4389145 4389145 G T OR52B4 Silent p.A127A 0.37 TCGA-CC-A9FS-01 11 56058116 56058116 G T OR8H1 Nonsense_Mutation p.C141* 0.41 TCGA-CC-A9FS-01 11 59361132 59361132 C G OSBP Missense_Mutation p.Q541H 0.09 deleterious(0) probably_damaging(0.999) TCGA-CC-A9FS-01 11 5968754 5968754 C T OR56A3 Missense_Mutation p.H60Y 0.31 deleterious(0.02) benign(0.049) TCGA-CC-A9FS-01 11 72470359 72470359 C A STARD10 Missense_Mutation p.R92L 0.41 deleterious(0) probably_damaging(0.983) TCGA-CC-A9FS-01 11 7949557 7949557 T C OR10A6 Missense_Mutation p.Y218C 0.36 deleterious(0) probably_damaging(1) TCGA-CC-A9FS-01 11 85407366 85407366 T C SYTL2 Missense_Mutation p.N1178S 0.38 tolerated(0.14) benign(0.233) TCGA-CC-A9FS-01 11 92616466 92616466 G A FAT3 Missense_Mutation p.V4282M 0.21 possibly_damaging(0.849) TCGA-CC-A9FS-01 12 125434543 125434543 C A DHX37 Missense_Mutation p.K1093N 0.30 deleterious(0) probably_damaging(0.999) TCGA-CC-A9FS-01 12 12871119 12871119 G T CDKN1B Missense_Mutation p.A116S 0.38 tolerated(0.47) benign(0.011) TCGA-CC-A9FS-01 12 52702155 52702155 C A KRT86 Intron 0.26 TCGA-CC-A9FS-01 12 62946910 62946910 G T MON2 Nonsense_Mutation p.G1056* 0.33 TCGA-CC-A9FS-01 12 69652698 69652698 G T CPSF6 Silent p.P341P 0.43 TCGA-CC-A9FS-01 12 71032919 71032919 A T PTPRR 3'UTR 0.26 TCGA-CC-A9FS-01 12 9083317 9083317 G A PHC1 Missense_Mutation p.G300D 0.38 deleterious_low_confidence(0.02) probably_damaging(0.982) TCGA-CC-A9FS-01 15 22369137 22369137 G T OR4M2 Missense_Mutation p.A188S 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-CC-A9FS-01 15 34528262 34528262 T G SLC12A6 Missense_Mutation p.K1061Q 0.36 tolerated(0.21) benign(0.004) TCGA-CC-A9FS-01 15 55965587 55965587 T C PRTG Missense_Mutation p.K612E 0.16 tolerated(0.06) possibly_damaging(0.858) TCGA-CC-A9FS-01 15 65624285 65624285 T C IGDCC3 Missense_Mutation p.N381S 0.43 tolerated(0.09) benign(0.425) TCGA-CC-A9FS-01 15 75981258 75981258 C A CSPG4 Silent p.G716G 0.11 TCGA-CC-A9FS-01 15 99500725 99500725 T A IGF1R 3'UTR 0.30 TCGA-CC-A9FS-01 16 2108810 2108810 G A TSC2 Nonsense_Mutation p.W304* 0.44 TCGA-CC-A9FS-01 16 21212847 21212847 C A ZP2 Nonsense_Mutation p.E513* 0.51 TCGA-CC-A9FS-01 16 23713770 23713770 C G ERN2 Missense_Mutation p.S389T 0.39 deleterious(0.01) probably_damaging(0.991) TCGA-CC-A9FS-01 16 347107 347107 C T AXIN1 Nonsense_Mutation p.W635* 0.50 TCGA-CC-A9FS-01 16 58552349 58552349 G T SETD6 Missense_Mutation p.D340Y 0.57 deleterious(0.01) possibly_damaging(0.853) TCGA-CC-A9FS-01 16 70176519 70176519 C G PDPR Missense_Mutation p.S512C 0.67 deleterious(0.01) possibly_damaging(0.479) TCGA-CC-A9FS-01 16 75654670 75654670 G T ADAT1 Missense_Mutation p.L10I 0.61 deleterious(0.04) probably_damaging(0.996) TCGA-CC-A9FS-01 17 33281459 33281459 C T CCT6B Missense_Mutation p.D166N 0.33 tolerated(0.14) benign(0.018) TCGA-CC-A9FS-01 17 39659673 39659673 G A KRT13 Missense_Mutation p.R201C 0.39 deleterious(0.02) probably_damaging(0.996) TCGA-CC-A9FS-01 17 48561893 48561893 C T RSAD1 Nonsense_Mutation p.Q400* 0.41 TCGA-CC-A9FS-01 17 55693354 55693354 G A MSI2 Silent p.P187P 0.11 TCGA-CC-A9FS-01 17 58533692 58533692 T C APPBP2 Missense_Mutation p.D371G 0.43 tolerated(0.22) benign(0.11) TCGA-CC-A9FS-01 17 63553964 63553964 C - AXIN2 Frame_Shift_Del p.A259Rfs*3 0.22 TCGA-CC-A9FS-01 17 73888160 73888160 C T TRIM65 Missense_Mutation p.C284Y 0.36 tolerated(0.25) benign(0.024) TCGA-CC-A9FS-01 17 77080015 77080015 T C ENGASE Missense_Mutation p.V475A 0.42 tolerated(0.5) benign(0.002) TCGA-CC-A9FS-01 17 78110084 78110084 T A EIF4A3 Missense_Mutation p.Q345L 0.27 deleterious(0.02) possibly_damaging(0.593) TCGA-CC-A9FS-01 18 67365697 67365697 C T DOK6 Missense_Mutation p.T156I 0.29 tolerated(0.15) benign(0.038) TCGA-CC-A9FS-01 19 10112250 10112250 C T COL5A3 Missense_Mutation p.D354N 0.33 unknown(0) TCGA-CC-A9FS-01 19 10218693 10218693 G A PPAN Silent p.E132E 0.19 TCGA-CC-A9FS-01 19 12822419 12822419 G C TNPO2 Missense_Mutation p.P300R 0.54 deleterious(0) possibly_damaging(0.739) TCGA-CC-A9FS-01 19 14228387 14228387 C G PRKACA 5'UTR 0.18 TCGA-CC-A9FS-01 19 15343002 15343002 G T EPHX3 Silent p.T7T 0.59 TCGA-CC-A9FS-01 19 1924197 1924197 G C SCAMP4 Missense_Mutation p.E202Q 0.56 tolerated(0.28) probably_damaging(0.998) TCGA-CC-A9FS-01 19 2278616 2278616 C T C19orf35 Silent p.A193A 0.27 TCGA-CC-A9FS-01 19 3366645 3366645 C T NFIC Missense_Mutation p.S4F 0.22 deleterious_low_confidence(0) benign(0.014) TCGA-CC-A9FS-01 19 39412662 39412662 T A SARS2 Silent p.P150P 0.40 TCGA-CC-A9FS-01 19 4695441 4695441 C A DPP9 Missense_Mutation p.R434S 0.25 tolerated(0.75) benign(0.002) TCGA-CC-A9FS-01 19 49933722 49933722 A G SLC17A7 3'UTR 0.41 TCGA-CC-A9FS-01 19 55401023 55401023 C G FCAR Missense_Mutation p.H220D 0.43 tolerated(0.62) benign(0) TCGA-CC-A9FS-01 19 55652294 55652294 C A TNNT1 Missense_Mutation p.R115L 0.06 deleterious(0.01) probably_damaging(1) TCGA-CC-A9FS-01 19 6772795 6772795 G A VAV1 5'UTR 0.23 TCGA-CC-A9FS-01 19 7965152 7965152 C T LRRC8E Missense_Mutation p.A582V 0.29 tolerated(1) benign(0.001) TCGA-CC-A9FS-01 1 1375778 1375778 G A VWA1 3'UTR 0.58 TCGA-CC-A9FS-01 1 155630636 155630636 C A YY1AP1 Missense_Mutation p.M493I 0.75 tolerated_low_confidence(0.1) benign(0.015) TCGA-CC-A9FS-01 1 167971753 167971753 C T DCAF6 Missense_Mutation p.R313C 0.66 deleterious(0) probably_damaging(0.992) TCGA-CC-A9FS-01 1 180885825 180885825 G T KIAA1614 Missense_Mutation p.D196Y 0.11 deleterious(0) probably_damaging(0.939) TCGA-CC-A9FS-01 1 201012432 201012432 A G CACNA1S Silent p.H1675H 0.72 TCGA-CC-A9FS-01 1 207697037 207697037 T G CR1 Missense_Mutation p.V190G 0.10 tolerated(0.07) probably_damaging(0.995) TCGA-CC-A9FS-01 1 220088776 220088777 TA - SLC30A10 3'UTR 0.10 TCGA-CC-A9FS-01 1 231906730 231906730 G A DISC1 Silent p.L516L 0.07 TCGA-CC-A9FS-01 1 238045719 238045719 G T ZP4 3'UTR 0.08 TCGA-CC-A9FS-01 1 27097796 27097796 A T ARID1A Nonsense_Mutation p.K1129* 0.34 TCGA-CC-A9FS-01 1 55279596 55279596 C T C1orf177 Missense_Mutation p.T291I 0.42 tolerated(0.4) benign(0.006) TCGA-CC-A9FS-01 1 87045742 87045742 G A CLCA4 Missense_Mutation p.S825N 0.38 tolerated(0.55) benign(0.001) TCGA-CC-A9FS-01 20 21312420 21312420 G T XRN2 Missense_Mutation p.D222Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-CC-A9FS-01 20 23029597 23029597 G C THBD Missense_Mutation p.P182R 0.59 tolerated(0.18) benign(0.391) TCGA-CC-A9FS-01 20 29632712 29632712 T C FRG1B Missense_Mutation p.L176P 0.04 deleterious(0) probably_damaging(0.999) TCGA-CC-A9FS-01 20 32256018 32256018 C A ACTL10 Missense_Mutation p.L239M 0.05 deleterious(0.02) possibly_damaging(0.715) TCGA-CC-A9FS-01 20 39791106 39791106 A T PLCG1 Missense_Mutation p.D176V 0.28 deleterious(0) possibly_damaging(0.866) TCGA-CC-A9FS-01 21 36042758 36042758 C T CLIC6 Silent p.D357D 0.07 TCGA-CC-A9FS-01 22 21343966 21344002 GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA - LZTR1 Splice_Site p.X217_splice 0.26 TCGA-CC-A9FS-01 22 24123543 24123543 G A MMP11 Missense_Mutation p.S341N 0.36 tolerated(0.27) benign(0.02) TCGA-CC-A9FS-01 22 29913067 29913067 C G THOC5 Silent p.L544L 0.39 TCGA-CC-A9FS-01 22 30202839 30202839 C A ASCC2 Missense_Mutation p.E321D 0.18 deleterious(0.04) benign(0.358) TCGA-CC-A9FS-01 22 38890032 38890032 C A DDX17 Missense_Mutation p.R440I 0.33 deleterious(0) probably_damaging(0.991) TCGA-CC-A9FS-01 22 51066154 51066154 G A ARSA Silent p.A18A 0.39 TCGA-CC-A9FS-01 2 101096961 101096961 T C NMS Missense_Mutation p.S114P 0.29 tolerated(0.2) benign(0.002) TCGA-CC-A9FS-01 2 10192629 10192629 G A KLF11 Missense_Mutation p.A512T 0.53 deleterious_low_confidence(0.01) benign(0.255) TCGA-CC-A9FS-01 2 103353392 103353392 G T MFSD9 5'Flank 0.38 TCGA-CC-A9FS-01 2 1481013 1481013 C A TPO Missense_Mutation p.D325E 0.37 deleterious(0) probably_damaging(0.999) TCGA-CC-A9FS-01 2 167162425 167162425 G T SCN9A Missense_Mutation p.T158N 0.30 deleterious(0) probably_damaging(0.991) TCGA-CC-A9FS-01 2 167760305 167760305 C A XIRP2 Missense_Mutation p.R105S 0.39 possibly_damaging(0.88) TCGA-CC-A9FS-01 2 170929938 170929940 GAA - UBR3 In_Frame_Del p.E1677del 0.08 TCGA-CC-A9FS-01 2 179600418 179600418 C T TTN Missense_Mutation p.V4919I 0.43 TCGA-CC-A9FS-01 2 207041060 207041060 A G GPR1 Silent p.Y304Y 0.37 TCGA-CC-A9FS-01 2 216248812 216248813 - A FN1 Frame_Shift_Ins p.V1609Cfs*20 0.22 TCGA-CC-A9FS-01 2 230223131 230223131 T G DNER 3'UTR 0.33 TCGA-CC-A9FS-01 2 46988681 46988681 T G SOCS5 3'UTR 0.37 TCGA-CC-A9FS-01 2 46988713 46988713 T - SOCS5 3'UTR 0.30 TCGA-CC-A9FS-01 2 73114643 73114643 G A SPR Missense_Mutation p.A28T 0.04 deleterious(0.01) possibly_damaging(0.906) TCGA-CC-A9FS-01 2 74763931 74763931 C A LOXL3 Missense_Mutation p.G273W 0.40 deleterious(0.01) probably_damaging(0.992) TCGA-CC-A9FS-01 3 10291105 10291105 C T TATDN2 Missense_Mutation p.S74F 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.577) TCGA-CC-A9FS-01 3 121724154 121724154 G A ILDR1 Missense_Mutation p.R106W 0.36 deleterious(0) probably_damaging(0.993) TCGA-CC-A9FS-01 3 133894813 133894813 C A RYK Missense_Mutation p.R460M 0.26 deleterious(0) probably_damaging(0.991) TCGA-CC-A9FS-01 3 142279231 142279231 G C ATR Missense_Mutation p.S472C 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.471) TCGA-CC-A9FS-01 3 153943788 153943788 C T ARHGEF26 Silent p.T693T 0.29 TCGA-CC-A9FS-01 3 193384162 193384162 A G OPA1 Silent p.Q934Q 0.39 TCGA-CC-A9FS-01 3 45077310 45077310 G T CLEC3B Missense_Mutation p.G168V 0.33 deleterious(0) probably_damaging(0.996) TCGA-CC-A9FS-01 3 51430282 51430282 G T RBM15B Missense_Mutation p.R484S 0.26 deleterious(0) possibly_damaging(0.689) TCGA-CC-A9FS-01 3 89156962 89156962 C A EPHA3 Missense_Mutation p.L22M 0.38 tolerated(0.09) benign(0.001) TCGA-CC-A9FS-01 4 119952156 119952156 T A SYNPO2 Silent p.A742A 0.51 TCGA-CC-A9FS-01 4 13605490 13605490 G A BOD1L1 Missense_Mutation p.L1012F 0.09 probably_damaging(0.945) TCGA-CC-A9FS-01 4 144801586 144801586 A G GYPE Silent p.S38S 0.10 TCGA-CC-A9FS-01 4 265712 265712 C G ZNF732 Missense_Mutation p.G312R 0.35 deleterious(0) probably_damaging(0.999) TCGA-CC-A9FS-01 4 48894859 48894859 C T OCIAD2 Missense_Mutation p.V105I 0.41 tolerated(0.4) benign(0.007) TCGA-CC-A9FS-01 5 140720901 140720901 A G PCDHGA2 Missense_Mutation p.K788R 0.09 tolerated_low_confidence(0.06) benign(0.003) TCGA-CC-A9FS-01 5 150886785 150886785 C T FAT2 Silent p.P4149P 0.40 TCGA-CC-A9FS-01 5 60050359 60050359 G T ELOVL7 3'UTR 0.48 TCGA-CC-A9FS-01 5 86564557 86564577 GGTGCTGCTGCTGGCGTGGCC - RASA1 In_Frame_Del p.A100_A106del 0.22 TCGA-CC-A9FS-01 6 27777979 27777979 G A HIST1H3H Missense_Mutation p.R43Q 0.41 deleterious_low_confidence(0) benign(0.151) TCGA-CC-A9FS-01 6 30620860 30620869 AAGTTTAACT - C6orf136 3'UTR 0.21 TCGA-CC-A9FS-01 6 31915209 31915209 A C CFB Missense_Mutation p.H692P 0.40 tolerated(0.09) possibly_damaging(0.465) TCGA-CC-A9FS-01 6 3850894 3850894 G A FAM50B Silent p.E283E 0.21 TCGA-CC-A9FS-01 6 42988468 42988468 G T KLHDC3 Silent p.G382G 0.33 TCGA-CC-A9FS-01 7 100677098 100677098 C A MUC17 Missense_Mutation p.P801T 0.09 unknown(0) TCGA-CC-A9FS-01 7 100806275 100806275 A T VGF 3'UTR 0.15 TCGA-CC-A9FS-01 7 122033326 122033326 G T CADPS2 Missense_Mutation p.P978T 0.05 tolerated(0.07) benign(0.24) TCGA-CC-A9FS-01 7 135376543 135376543 G A SLC13A4 Intron 0.39 TCGA-CC-A9FS-01 7 141673088 141673088 G A TAS2R38 Silent p.S134S 0.31 TCGA-CC-A9FS-01 7 20198211 20198211 C T MACC1 Silent p.Q591Q 0.13 TCGA-CC-A9FS-01 7 27239233 27239233 G C HOXA13 Missense_Mutation p.P155R 0.41 deleterious(0.02) unknown(0) TCGA-CC-A9FS-01 7 48313700 48313700 A T ABCA13 Missense_Mutation p.E1479D 0.41 benign(0.114) TCGA-CC-A9FS-01 7 5036472 5036472 G T RNF216P1 RNA 0.21 TCGA-CC-A9FS-01 7 76924240 76924240 C T CCDC146 3'UTR 0.17 TCGA-CC-A9FS-01 7 83278008 83278008 G T SEMA3E 5'UTR 0.42 TCGA-CC-A9FS-01 8 10396245 10396245 G A PRSS55 Missense_Mutation p.R334K 0.16 tolerated(0.19) benign(0.008) TCGA-CC-A9FS-01 8 126379208 126379208 G C NSMCE2 3'UTR 0.10 TCGA-CC-A9FS-01 8 139606295 139606295 C A COL22A1 Missense_Mutation p.G1527V 0.11 unknown(0) TCGA-CC-A9FS-01 8 143562916 143562916 T A BAI1 Silent p.P658P 0.18 TCGA-CC-A9FS-01 8 26240452 26240452 C G BNIP3L 5'UTR 0.56 TCGA-CC-A9FS-01 8 56436289 56436289 G T XKR4 Missense_Mutation p.A486S 0.10 tolerated(0.67) probably_damaging(0.998) TCGA-CC-A9FS-01 8 74858761 74858761 G T TCEB1 3'UTR 0.30 TCGA-CC-A9FS-01 9 123667194 123667194 C T TRAF1 3'UTR 0.40 TCGA-CC-A9FS-01 9 124062174 124062174 G T GSN Missense_Mutation p.C12F 0.47 tolerated_low_confidence(0.06) benign(0.011) TCGA-CC-A9FS-01 9 125659787 125659787 A C RC3H2 Translation_Start_Site p.M1? 0.30 deleterious(0) possibly_damaging(0.692) TCGA-CC-A9FS-01 9 130996358 130996358 G T DNM1 Missense_Mutation p.R465L 0.39 deleterious(0.01) probably_damaging(0.981) TCGA-CC-A9FS-01 9 139925311 139925311 G T FUT7 Silent p.R294R 0.41 TCGA-CC-A9FS-01 9 27228299 27228299 G A TEK Missense_Mutation p.R1099Q 0.40 deleterious(0.02) probably_damaging(0.995) TCGA-CC-A9FS-01 9 97869519 97869519 C T FANCC Silent p.L454L 0.40 TCGA-CC-A9FS-01 X 115306012 115306012 C A AGTR2 3'UTR 0.89 TCGA-CC-A9FS-01 X 119496020 119496020 A C ATP1B4 5'UTR 0.06 TCGA-CC-A9FS-01 X 122761595 122761595 T G THOC2 Missense_Mutation p.E902D 0.11 deleterious(0.01) probably_damaging(0.934) TCGA-CC-A9FS-01 X 47272152 47272152 T A ZNF157 Missense_Mutation p.F227Y 0.78 tolerated(0.09) probably_damaging(0.993) TCGA-CC-A9FS-01 X 5811576 5811576 A T NLGN4X Missense_Mutation p.V578E 0.59 deleterious(0) probably_damaging(0.99) TCGA-CC-A9FU-01 10 120916266 120916266 T A SFXN4 Silent p.V180V 0.41 TCGA-CC-A9FU-01 10 98773495 98773495 C A SLIT1 Intron 0.48 TCGA-CC-A9FU-01 11 55111591 55111591 T C OR4A16 Silent p.S305S 0.30 TCGA-CC-A9FU-01 11 7960486 7960486 T A OR10A3 Missense_Mutation p.L194F 0.26 tolerated(0.17) benign(0.062) TCGA-CC-A9FU-01 11 89768469 89768469 T G TRIM49C Missense_Mutation p.C30W 0.18 deleterious(0) probably_damaging(1) TCGA-CC-A9FU-01 11 89768470 89768470 G T TRIM49C Missense_Mutation p.G31W 0.18 deleterious(0) probably_damaging(1) TCGA-CC-A9FU-01 12 124341720 124341720 G A DNAH10 Missense_Mutation p.V2068I 0.30 possibly_damaging(0.578) TCGA-CC-A9FU-01 12 23793762 23793762 C T SOX5 Missense_Mutation p.G334D 0.52 deleterious(0.04) possibly_damaging(0.701) TCGA-CC-A9FU-01 12 26640009 26640009 C A ITPR2 Missense_Mutation p.R1849L 0.52 tolerated(0.3) benign(0.001) TCGA-CC-A9FU-01 12 59266374 59266374 A T LRIG3 Missense_Mutation p.S1114T 0.65 tolerated_low_confidence(0.12) benign(0.014) TCGA-CC-A9FU-01 12 81112793 81112793 G C MYF5 Missense_Mutation p.G244A 0.60 tolerated(0.46) benign(0.106) TCGA-CC-A9FU-01 13 28959141 28959141 T A FLT1 Missense_Mutation p.N666I 0.87 deleterious(0) possibly_damaging(0.882) TCGA-CC-A9FU-01 14 52458049 52458049 A G C14orf166 Missense_Mutation p.R26G 0.59 deleterious(0) probably_damaging(0.941) TCGA-CC-A9FU-01 15 43661977 43661977 C A ZSCAN29 Silent p.R45R 0.30 TCGA-CC-A9FU-01 16 360070 360070 C A AXIN1 Splice_Site p.X340_splice 0.82 TCGA-CC-A9FU-01 17 21203869 21203869 G C MAP2K3 Missense_Mutation p.E60Q 0.21 tolerated(0.43) benign(0.006) TCGA-CC-A9FU-01 17 26885512 26885512 G A PIGS Missense_Mutation p.P306S 0.66 deleterious(0) benign(0.054) TCGA-CC-A9FU-01 17 38798555 38798555 G T SMARCE1 Intron 0.30 TCGA-CC-A9FU-01 17 41738601 41738601 G A MEOX1 Missense_Mutation p.A101V 0.24 tolerated(0.11) benign(0.006) TCGA-CC-A9FU-01 17 79791796 79791796 C A PPP1R27 Intron 0.40 TCGA-CC-A9FU-01 18 14479232 14479232 C T CXADRP3 RNA 0.17 TCGA-CC-A9FU-01 19 1827911 1827912 - CTCAT REXO1 Frame_Shift_Ins p.A293Mfs*202 0.72 TCGA-CC-A9FU-01 19 42947045 42947045 G A CXCL17 5'UTR 0.80 TCGA-CC-A9FU-01 19 46997793 46997793 G A PNMAL2 Silent p.D310D 0.10 TCGA-CC-A9FU-01 19 53302147 53302147 G C ZNF28 3'UTR 0.14 TCGA-CC-A9FU-01 19 54385682 54385682 T A PRKCG 5'UTR 0.07 TCGA-CC-A9FU-01 19 54930426 54930426 C G TTYH1 Missense_Mutation p.S84W 0.86 deleterious(0.03) possibly_damaging(0.768) TCGA-CC-A9FU-01 19 55815479 55815480 - TAA BRSK1 Splice_Site p.X449_splice 0.18 TCGA-CC-A9FU-01 19 7743050 7743050 C T C19orf59 Missense_Mutation p.A82V 0.10 tolerated(0.14) probably_damaging(0.931) TCGA-CC-A9FU-01 1 152733981 152733981 A T KPRP 3'UTR 0.31 TCGA-CC-A9FU-01 1 190068224 190068228 AGAGA - BRINP3 Frame_Shift_Del p.F407Lfs*4 0.21 TCGA-CC-A9FU-01 1 204095155 204095155 G A SOX13 Missense_Mutation p.D588N 0.31 tolerated(0.22) benign(0.092) TCGA-CC-A9FU-01 1 204198158 204198158 G A PLEKHA6 Silent p.G886G 0.33 TCGA-CC-A9FU-01 1 240256986 240256986 C T FMN2 Missense_Mutation p.A526V 0.24 unknown(0) TCGA-CC-A9FU-01 1 24078287 24078287 G A TCEB3 Missense_Mutation p.D424N 0.87 tolerated(0.08) benign(0.18) TCGA-CC-A9FU-01 1 47649702 47649702 C A PDZK1IP1 Nonsense_Mutation p.E96* 0.36 TCGA-CC-A9FU-01 1 50885040 50885040 G T DMRTA2 Nonsense_Mutation p.S309* 0.39 TCGA-CC-A9FU-01 1 68947881 68947881 T A DEPDC1 Missense_Mutation p.N537I 0.43 tolerated(0.07) benign(0.07) TCGA-CC-A9FU-01 1 70385196 70385196 G A LRRC7 Intron 0.64 TCGA-CC-A9FU-01 20 55111253 55111253 G T FAM209B Missense_Mutation p.G92V 0.63 deleterious(0) possibly_damaging(0.58) TCGA-CC-A9FU-01 22 19124915 19124915 C A DGCR14 Missense_Mutation p.G319V 0.42 deleterious(0) probably_damaging(1) TCGA-CC-A9FU-01 22 39795788 39795788 C T TAB1 5'UTR 0.43 TCGA-CC-A9FU-01 2 100911944 100911944 T C LONRF2 Silent p.E516E 0.43 TCGA-CC-A9FU-01 2 158300471 158300471 C T CYTIP Missense_Mutation p.G21E 0.45 tolerated(0.09) benign(0.343) TCGA-CC-A9FU-01 2 178985043 178985043 A T RBM45 Missense_Mutation p.N194Y 0.36 deleterious(0.01) probably_damaging(0.943) TCGA-CC-A9FU-01 2 179451970 179451970 G A TTN Missense_Mutation p.T21323I 0.48 TCGA-CC-A9FU-01 2 207437863 207437863 C T ADAM23 Missense_Mutation p.R561W 0.42 deleterious(0) probably_damaging(1) TCGA-CC-A9FU-01 2 231911883 231911883 G A C2orf72 3'UTR 0.59 TCGA-CC-A9FU-01 2 32724628 32724628 C T BIRC6 Missense_Mutation p.T2828I 0.45 benign(0.143) TCGA-CC-A9FU-01 3 180334069 180334069 C T CCDC39 Missense_Mutation p.R890K 0.44 tolerated(0.24) possibly_damaging(0.522) TCGA-CC-A9FU-01 3 47129617 47129617 G C SETD2 Missense_Mutation p.L1755V 0.28 deleterious(0.02) probably_damaging(0.996) TCGA-CC-A9FU-01 3 69028841 69028841 C T EOGT Missense_Mutation p.D354N 0.63 tolerated(0.1) possibly_damaging(0.908) TCGA-CC-A9FU-01 4 46043146 46043146 A C GABRG1 Missense_Mutation p.F419L 0.04 tolerated(0.37) probably_damaging(0.965) TCGA-CC-A9FU-01 5 139062643 139062643 T A CXXC5 3'UTR 0.31 TCGA-CC-A9FU-01 5 145493593 145493593 T A LARS 3'UTR 0.19 TCGA-CC-A9FU-01 5 180666153 180666153 G T GNB2L1 Missense_Mutation p.L184M 0.07 deleterious(0.03) probably_damaging(0.986) TCGA-CC-A9FU-01 6 139456503 139456503 C A HECA 5'UTR 0.36 TCGA-CC-A9FU-01 6 148846451 148846451 G C SASH1 Missense_Mutation p.D412H 0.33 deleterious(0) probably_damaging(1) TCGA-CC-A9FU-01 6 157100005 157100005 C A ARID1B Silent p.G314G 0.07 TCGA-CC-A9FU-01 6 157100329 157100329 G A ARID1B Silent p.L422L 0.20 TCGA-CC-A9FU-01 6 160953610 160953611 - A LPA Frame_Shift_Ins p.K1972* 0.21 TCGA-CC-A9FU-01 6 76712648 76712648 C A IMPG1 Missense_Mutation p.E426D 0.44 tolerated(0.43) benign(0.004) TCGA-CC-A9FU-01 7 15427093 15427093 A T AGMO Missense_Mutation p.F299I 0.39 tolerated(0.06) benign(0.411) TCGA-CC-A9FU-01 7 154379707 154379707 T A DPP6 Intron 0.48 TCGA-CC-A9FU-01 7 65225091 65225091 T C SNORA15 RNA 0.42 TCGA-CC-A9FU-01 7 65579921 65579921 G T CRCP 5'UTR 0.53 TCGA-CC-A9FU-01 8 103335715 103335715 C G UBR5 Missense_Mutation p.L536F 0.22 deleterious(0.01) possibly_damaging(0.702) TCGA-CC-A9FU-01 8 113697726 113697726 A T CSMD3 Silent p.P797P 0.96 TCGA-CC-A9FU-01 8 116426936 116426936 G T TRPS1 Missense_Mutation p.S1067Y 0.91 tolerated_low_confidence(0.16) probably_damaging(0.998) TCGA-CC-A9FU-01 8 37554679 37554679 G A ZNF703 Missense_Mutation p.S87N 0.70 deleterious(0.02) possibly_damaging(0.827) TCGA-CC-A9FU-01 9 113170455 113170455 A G SVEP1 Silent p.N2475N 0.80 TCGA-CC-A9FU-01 9 117849523 117849523 C T TNC Missense_Mutation p.G163S 0.46 deleterious(0) possibly_damaging(0.866) TCGA-CC-A9FU-01 9 139656673 139656673 G T LCN15 Missense_Mutation p.P163T 0.40 tolerated(0.58) benign(0.05) TCGA-CC-A9FU-01 9 33113418 33113418 C A B4GALT1 3'UTR 0.82 TCGA-CC-A9FU-01 X 122747491 122747491 T C THOC2 Silent p.T1506T 0.83 TCGA-CC-A9FU-01 X 48934603 48934603 A T WDR45 Intron 0.92 TCGA-CC-A9FV-01 10 102850149 102850149 G A TLX1NB 5'UTR 0.07 TCGA-CC-A9FV-01 10 79397504 79397504 C T KCNMA1 5'Flank 0.50 TCGA-CC-A9FV-01 10 8056715 8056715 C T TAF3 3'UTR 0.04 TCGA-CC-A9FV-01 11 1159375 1159375 C T MUC5AC Missense_Mutation p.T451M 0.06 deleterious(0.01) possibly_damaging(0.8) TCGA-CC-A9FV-01 11 65124527 65124527 C T TIGD3 Silent p.D416D 0.08 TCGA-CC-A9FV-01 12 121202762 121202762 A G SPPL3 3'UTR 0.05 TCGA-CC-A9FV-01 12 12974309 12974309 T G DDX47 Missense_Mutation p.S117A 0.16 tolerated(0.34) benign(0.004) TCGA-CC-A9FV-01 14 105929876 105929876 A G MTA1 Missense_Mutation p.Y355C 0.10 deleterious(0) probably_damaging(0.999) TCGA-CC-A9FV-01 16 2104355 2104355 C - TSC2 Frame_Shift_Del p.N133Tfs*49 0.08 TCGA-CC-A9FV-01 16 2136371 2136372 AT - TSC2 Frame_Shift_Del p.I1614Hfs*38 0.10 TCGA-CC-A9FV-01 16 3170245 3170245 C T ZNF205 Silent p.T528T 0.07 TCGA-CC-A9FV-01 16 67919503 67919503 T C NRN1L Intron 0.05 TCGA-CC-A9FV-01 17 61911595 61911595 T C SMARCD2 Missense_Mutation p.I339V 0.17 tolerated(0.13) probably_damaging(0.97) TCGA-CC-A9FV-01 17 78363961 78363961 A C RNF213 Missense_Mutation p.Q5145H 0.14 benign(0.078) TCGA-CC-A9FV-01 1 100602441 100602441 G A TRMT13 Missense_Mutation p.E51K 0.06 deleterious(0.05) benign(0.155) TCGA-CC-A9FV-01 1 110091289 110091289 C T GNAI3 5'UTR 0.10 TCGA-CC-A9FV-01 1 160000243 160000243 G C PIGM 3'UTR 0.18 TCGA-CC-A9FV-01 1 161207972 161207972 A G NR1I3 5'UTR 0.25 TCGA-CC-A9FV-01 1 235617601 235617601 C T B3GALNT2 Missense_Mutation p.R393Q 0.13 deleterious(0.01) possibly_damaging(0.863) TCGA-CC-A9FV-01 1 24932145 24932145 C T NCMAP Silent p.T72T 0.12 TCGA-CC-A9FV-01 1 77334298 77334298 G A ST6GALNAC5 Silent p.Q44Q 0.05 TCGA-CC-A9FV-01 22 37603143 37603143 G A SSTR3 Missense_Mutation p.R234C 0.05 deleterious(0) probably_damaging(0.999) TCGA-CC-A9FV-01 2 201943675 201943675 A G NDUFB3 Missense_Mutation p.I24V 0.08 tolerated(0.84) benign(0.015) TCGA-CC-A9FV-01 2 24149803 24149803 G T ATAD2B 5'UTR 0.06 TCGA-CC-A9FV-01 2 49295430 49295430 C T FSHR Splice_Site p.X51_splice 0.16 TCGA-CC-A9FV-01 2 75109363 75109363 C T HK2 Silent p.D612D 0.10 TCGA-CC-A9FV-01 3 183903945 183903945 G C ABCF3 5'UTR 0.14 TCGA-CC-A9FV-01 4 25849364 25849364 G T SEL1L3 Missense_Mutation p.N95K 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-CC-A9FV-01 5 54404222 54404222 T C GZMA Silent p.N209N 0.13 TCGA-CC-A9FV-01 6 24718778 24718778 A C C6orf62 Missense_Mutation p.F40C 0.13 deleterious(0) possibly_damaging(0.847) TCGA-CC-A9FV-01 6 36853754 36853754 G A C6orf89 5'UTR 0.17 TCGA-CC-A9FV-01 6 74072815 74072815 C A KHDC3L Intron 0.18 TCGA-CC-A9FV-01 7 124386471 124386471 T C GPR37 3'UTR 0.05 TCGA-CC-A9FV-01 X 14862009 14862009 A T FANCB Missense_Mutation p.F754I 0.12 tolerated(0.27) benign(0.027) TCGA-CC-A9FW-01 10 103535640 103535640 G A FGF8 Silent p.S6S 0.20 TCGA-CC-A9FW-01 10 120896412 120896412 A G FAM45A 3'UTR 0.69 TCGA-CC-A9FW-01 10 127685132 127685132 G T FANK1 Missense_Mutation p.D138Y 0.65 deleterious(0) probably_damaging(1) TCGA-CC-A9FW-01 10 14923615 14923615 G T SUV39H2 Nonsense_Mutation p.E50* 0.33 TCGA-CC-A9FW-01 10 55955617 55955617 G A PCDH15 Silent p.A377A 0.32 TCGA-CC-A9FW-01 10 61413702 61413702 C T SLC16A9 Missense_Mutation p.G361E 0.42 deleterious(0) probably_damaging(1) TCGA-CC-A9FW-01 10 70406241 70406241 A T TET1 Missense_Mutation p.E1252V 0.46 deleterious(0) benign(0.065) TCGA-CC-A9FW-01 10 7791465 7791465 A G ITIH2 3'UTR 0.72 TCGA-CC-A9FW-01 10 98105735 98105735 C G OPALIN Missense_Mutation p.G130A 0.19 tolerated_low_confidence(0.1) probably_damaging(0.959) TCGA-CC-A9FW-01 11 102713577 102713577 G A MMP3 Missense_Mutation p.P59L 0.26 tolerated(0.72) benign(0.003) TCGA-CC-A9FW-01 11 125513708 125513708 C T CHEK1 Missense_Mutation p.T279I 0.21 tolerated(0.39) benign(0) TCGA-CC-A9FW-01 11 126299104 126299104 A G KIRREL3 Silent p.G592G 0.32 TCGA-CC-A9FW-01 11 55371788 55371788 C T OR4C11 Missense_Mutation p.R21K 0.80 tolerated(1) benign(0.001) TCGA-CC-A9FW-01 11 55563231 55563231 A G OR5D14 Missense_Mutation p.H67R 0.25 deleterious(0.02) benign(0.172) TCGA-CC-A9FW-01 11 55563576 55563576 A G OR5D14 Missense_Mutation p.E182G 0.17 deleterious(0.01) possibly_damaging(0.833) TCGA-CC-A9FW-01 11 55681236 55681236 A T OR5W2 Missense_Mutation p.S275T 0.23 deleterious(0.02) probably_damaging(0.995) TCGA-CC-A9FW-01 11 55904552 55904552 G T OR8J3 Missense_Mutation p.L215I 0.21 tolerated(0.09) benign(0.042) TCGA-CC-A9FW-01 11 58126287 58126287 C A OR5B17 Nonsense_Mutation p.E86* 0.24 TCGA-CC-A9FW-01 11 62984853 62984853 T C SLC22A25 Missense_Mutation p.I255V 0.23 tolerated(0.42) possibly_damaging(0.67) TCGA-CC-A9FW-01 11 64888309 64888309 T A FAU Intron 0.52 TCGA-CC-A9FW-01 11 78369713 78369713 C T TENM4 Missense_Mutation p.G2567D 0.48 deleterious(0) probably_damaging(0.946) TCGA-CC-A9FW-01 11 94113805 94113805 C T GPR83 Missense_Mutation p.R261H 0.29 tolerated(0.75) benign(0.013) TCGA-CC-A9FW-01 11 95595469 95595469 C A MTMR2 Silent p.T108T 0.11 TCGA-CC-A9FW-01 12 104340420 104340420 A T HSP90B1 Silent p.T684T 0.37 TCGA-CC-A9FW-01 12 105591692 105591692 A G APPL2 Silent p.Y307Y 0.37 TCGA-CC-A9FW-01 12 108589481 108589481 T A WSCD2 5'UTR 0.17 TCGA-CC-A9FW-01 12 121202646 121202646 T G SPPL3 3'UTR 0.38 TCGA-CC-A9FW-01 12 3390913 3390913 A C TSPAN9 Missense_Mutation p.K193T 0.19 tolerated(0.25) benign(0.284) TCGA-CC-A9FW-01 12 40618817 40618817 T A LRRK2 5'Flank 0.43 TCGA-CC-A9FW-01 12 53803328 53803328 A T SP1 Missense_Mutation p.H676L 0.23 deleterious(0) benign(0.004) TCGA-CC-A9FW-01 12 54106023 54106023 C A CALCOCO1 Intron 0.42 TCGA-CC-A9FW-01 12 62954725 62954725 A G MON2 Silent p.K1288K 0.44 TCGA-CC-A9FW-01 12 6756045 6756045 G A ACRBP Silent p.T59T 0.44 TCGA-CC-A9FW-01 12 70726591 70726591 A G CNOT2 Missense_Mutation p.N205S 0.51 tolerated(0.17) benign(0.001) TCGA-CC-A9FW-01 13 22084242 22084242 T G MICU2 Splice_Site p.X222_splice 0.34 TCGA-CC-A9FW-01 13 33241961 33241961 A G PDS5B Missense_Mutation p.I229V 0.73 tolerated(0.07) benign(0.237) TCGA-CC-A9FW-01 13 39621235 39621235 A T NHLRC3 Missense_Mutation p.E246V 0.80 deleterious(0.05) benign(0.014) TCGA-CC-A9FW-01 14 106866562 106866562 C T IGHV3-38 Silent p.L64L 0.47 TCGA-CC-A9FW-01 14 24847068 24847068 A T NFATC4 3'UTR 0.25 TCGA-CC-A9FW-01 14 50085855 50085856 AA - RPL36AL Intron 0.29 TCGA-CC-A9FW-01 14 56079290 56079290 G A KTN1 Splice_Site p.X175_splice 0.56 TCGA-CC-A9FW-01 15 29428590 29428590 C T FAM189A1 Silent p.V302V 0.29 TCGA-CC-A9FW-01 15 34065806 34065806 T C RYR3 Missense_Mutation p.Y3043H 0.36 probably_damaging(0.958) TCGA-CC-A9FW-01 15 40914304 40914304 A C CASC5 Missense_Mutation p.E640D 0.35 tolerated(0.36) benign(0.004) TCGA-CC-A9FW-01 15 52708430 52708430 T C MYO5A Missense_Mutation p.Y175C 0.30 deleterious(0.02) probably_damaging(1) TCGA-CC-A9FW-01 15 54305560 54305560 A C UNC13C Silent p.R154R 0.30 TCGA-CC-A9FW-01 15 59445837 59445837 G A MYO1E Missense_Mutation p.T1011M 0.31 tolerated(0.11) benign(0.124) TCGA-CC-A9FW-01 15 75113449 75113449 G C LMAN1L Missense_Mutation p.G314A 0.38 deleterious(0.02) benign(0.075) TCGA-CC-A9FW-01 15 78732183 78732183 T G IREB2 Missense_Mutation p.H22Q 0.27 tolerated(0.58) benign(0) TCGA-CC-A9FW-01 15 84639291 84639291 T A ADAMTSL3 Missense_Mutation p.L849Q 0.20 tolerated(0.09) possibly_damaging(0.892) TCGA-CC-A9FW-01 16 22444123 22444123 G A RRN3P3 RNA 0.41 TCGA-CC-A9FW-01 16 31470771 31470771 G A ARMC5 5'UTR 0.69 TCGA-CC-A9FW-01 16 61689556 61689556 G T CDH8 Missense_Mutation p.P575Q 0.66 deleterious(0) probably_damaging(0.967) TCGA-CC-A9FW-01 16 71885144 71885144 G A ATXN1L Missense_Mutation p.G501R 0.65 deleterious(0) probably_damaging(0.958) TCGA-CC-A9FW-01 16 83636063 83636063 T C CDH13 Missense_Mutation p.L369P 0.36 deleterious(0.03) benign(0.141) TCGA-CC-A9FW-01 16 84229176 84229176 C T ADAD2 Missense_Mutation p.P391S 0.76 deleterious(0.04) benign(0.121) TCGA-CC-A9FW-01 17 11515326 11515326 C A DNAH9 Intron 0.33 TCGA-CC-A9FW-01 17 12905600 12905600 T A ELAC2 Missense_Mutation p.E432V 0.49 deleterious(0.04) possibly_damaging(0.772) TCGA-CC-A9FW-01 17 15134247 15134247 C T PMP22 Missense_Mutation p.R157Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-CC-A9FW-01 17 15638739 15638739 T A ZNF286A Intron 0.43 TCGA-CC-A9FW-01 17 30817971 30817972 - T CDK5R1 3'UTR 0.36 TCGA-CC-A9FW-01 17 31258571 31258571 A G TMEM98 Missense_Mutation p.I9V 0.32 tolerated(0.14) benign(0.031) TCGA-CC-A9FW-01 17 33679831 33679831 A G SLFN11 Silent p.S750S 0.44 TCGA-CC-A9FW-01 17 42089431 42089431 A G TMEM101 Silent p.P213P 0.29 TCGA-CC-A9FW-01 17 42432445 42432445 C A FAM171A2 Silent p.G379G 0.20 TCGA-CC-A9FW-01 17 56082903 56082903 C T SRSF1 Missense_Mutation p.R204K 0.18 tolerated(0.35) unknown(0) TCGA-CC-A9FW-01 17 59763074 59763074 G C BRIP1 Intron 0.42 TCGA-CC-A9FW-01 17 74080622 74080622 T C EXOC7 Silent p.L635L 0.31 TCGA-CC-A9FW-01 18 34855176 34855176 T C CELF4 Missense_Mutation p.N160S 0.82 tolerated(0.98) probably_damaging(0.997) TCGA-CC-A9FW-01 18 9258186 9258186 G T ANKRD12 Missense_Mutation p.V1641F 0.75 tolerated_low_confidence(0.1) benign(0.008) TCGA-CC-A9FW-01 18 9887223 9887223 C T TXNDC2 Silent p.P249P 0.73 TCGA-CC-A9FW-01 19 10795035 10795035 G C ILF3 Intron 0.27 TCGA-CC-A9FW-01 19 14028917 14028917 G T CC2D1A Missense_Mutation p.Q261H 0.56 tolerated(0.38) benign(0.046) TCGA-CC-A9FW-01 19 14703118 14703118 T G CLEC17A Missense_Mutation p.D75E 0.21 tolerated(0.69) benign(0.002) TCGA-CC-A9FW-01 19 19162935 19162935 G A ARMC6 Missense_Mutation p.A262T 0.50 deleterious(0) probably_damaging(0.984) TCGA-CC-A9FW-01 19 3825331 3825331 G T ZFR2 Silent p.P370P 0.09 TCGA-CC-A9FW-01 19 42880376 42880376 C G MEGF8 Missense_Mutation p.L2596V 0.24 deleterious(0) probably_damaging(1) TCGA-CC-A9FW-01 19 45281177 45281177 C A CBLC 5'UTR 0.46 TCGA-CC-A9FW-01 19 45926590 45926590 C A ERCC1 Missense_Mutation p.G15W 0.14 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-CC-A9FW-01 19 48954417 48954417 C T GRWD1 Missense_Mutation p.R318C 0.24 deleterious(0.02) benign(0.065) TCGA-CC-A9FW-01 19 53302075 53302075 T A ZNF28 3'UTR 0.71 TCGA-CC-A9FW-01 19 53473005 53473005 A T ZNF702P RNA 0.21 TCGA-CC-A9FW-01 19 53589538 53589538 C A ZNF160 5'UTR 0.22 TCGA-CC-A9FW-01 19 53794345 53794345 A T BIRC8 5'UTR 0.30 TCGA-CC-A9FW-01 19 6475892 6475892 G A DENND1C Silent p.H245H 0.47 TCGA-CC-A9FW-01 19 9946009 9946009 G A PIN1 5'UTR 0.17 TCGA-CC-A9FW-01 1 120436833 120436833 C A ADAM30 Silent p.R709R 0.65 TCGA-CC-A9FW-01 1 152282011 152282011 G T FLG Missense_Mutation p.P1784H 0.32 possibly_damaging(0.893) TCGA-CC-A9FW-01 1 153122523 153122523 T A SPRR2G Nonsense_Mutation p.K22* 0.16 TCGA-CC-A9FW-01 1 154226519 154226519 C T UBAP2L Missense_Mutation p.P603L 0.17 tolerated(0.08) unknown(0) TCGA-CC-A9FW-01 1 155300391 155300391 T C RUSC1 3'UTR 0.42 TCGA-CC-A9FW-01 1 173876617 173876617 A C SERPINC1 Missense_Mutation p.S397A 0.32 deleterious(0.01) possibly_damaging(0.514) TCGA-CC-A9FW-01 1 19490752 19490752 G A UBR4 Silent p.S1565S 0.67 TCGA-CC-A9FW-01 1 197872017 197872017 G A C1orf53 Missense_Mutation p.A80T 0.27 tolerated(0.39) benign(0.324) TCGA-CC-A9FW-01 1 201970854 201970854 A G RNPEP Missense_Mutation p.Y462C 0.43 deleterious(0) possibly_damaging(0.759) TCGA-CC-A9FW-01 1 228238391 228238391 C A WNT3A Silent p.A116A 0.49 TCGA-CC-A9FW-01 1 236889254 236889254 T G ACTN2 Missense_Mutation p.L157R 0.36 deleterious(0) probably_damaging(1) TCGA-CC-A9FW-01 1 24113847 24113847 A T PITHD1 Missense_Mutation p.Q206L 0.67 tolerated(0.07) benign(0.079) TCGA-CC-A9FW-01 1 37291402 37291403 - G GRIK3 Frame_Shift_Ins p.L519Pfs*72 0.23 TCGA-CC-A9FW-01 1 40701785 40701785 G T RLF Missense_Mutation p.D471Y 0.68 deleterious(0) probably_damaging(1) TCGA-CC-A9FW-01 1 43916134 43916134 T G SZT2 Missense_Mutation p.W3371G 0.60 deleterious(0) probably_damaging(0.997) TCGA-CC-A9FW-01 1 85018793 85018793 T A CTBS 3'UTR 0.65 TCGA-CC-A9FW-01 1 86426957 86426957 C A COL24A1 Missense_Mutation p.G846V 0.69 deleterious(0) probably_damaging(1) TCGA-CC-A9FW-01 20 1447368 1447368 C T NSFL1C Silent p.L34L 0.48 TCGA-CC-A9FW-01 20 23029882 23029882 C T THBD Nonsense_Mutation p.W87* 0.19 TCGA-CC-A9FW-01 20 31016225 31016225 G A ASXL1 Silent p.Q157Q 0.09 TCGA-CC-A9FW-01 20 33329620 33329620 C G NCOA6 Silent p.V1480V 0.30 TCGA-CC-A9FW-01 20 48252994 48252994 T A B4GALT5 Missense_Mutation p.Y341F 0.35 tolerated(1) benign(0.082) TCGA-CC-A9FW-01 20 49510256 49510256 T C ADNP Missense_Mutation p.Y332C 0.33 deleterious(0.04) possibly_damaging(0.76) TCGA-CC-A9FW-01 20 57769575 57769575 C T ZNF831 Silent p.P1167P 0.30 TCGA-CC-A9FW-01 20 60987760 60987760 C T RBBP8NL Missense_Mutation p.G599E 0.42 tolerated(0.18) benign(0.091) TCGA-CC-A9FW-01 20 61881390 61881390 A G NKAIN4 Missense_Mutation p.L30P 0.16 deleterious(0) probably_damaging(1) TCGA-CC-A9FW-01 21 31538490 31538490 T C CLDN17 Missense_Mutation p.Y149C 0.66 deleterious(0) probably_damaging(0.999) TCGA-CC-A9FW-01 21 45507598 45507598 C T TRAPPC10 Missense_Mutation p.A853V 0.52 tolerated(0.45) benign(0) TCGA-CC-A9FW-01 21 46875463 46875472 GGCTGCCACA - COL18A1 Frame_Shift_Del p.G7Sfs*17 0.68 TCGA-CC-A9FW-01 21 46888580 46888597 CGTGGACTGTGAGGAGTT - COL18A1 In_Frame_Del p.V358_F363del 0.57 TCGA-CC-A9FW-01 21 47666731 47666731 T A MCM3AP Missense_Mutation p.S1454C 0.71 deleterious(0) probably_damaging(0.996) TCGA-CC-A9FW-01 22 19839277 19839277 G A C22orf29 Missense_Mutation p.L170F 0.36 tolerated(0.2) probably_damaging(0.976) TCGA-CC-A9FW-01 22 24583203 24583203 T C SUSD2 Missense_Mutation p.V559A 0.52 deleterious(0.03) benign(0.4) TCGA-CC-A9FW-01 22 28195917 28195917 G C MN1 Silent p.G205G 0.05 TCGA-CC-A9FW-01 22 42387581 42387581 G A SEPT3 Missense_Mutation p.R225H 0.52 deleterious(0.02) benign(0.3) TCGA-CC-A9FW-01 22 44328798 44328798 T G PNPLA3 Missense_Mutation p.I176S 0.32 tolerated(0.63) benign(0.253) TCGA-CC-A9FW-01 22 50316312 50316312 C T CRELD2 Silent p.G264G 0.18 TCGA-CC-A9FW-01 2 131890529 131890529 C T PLEKHB2 Missense_Mutation p.P130S 0.57 tolerated(0.1) possibly_damaging(0.899) TCGA-CC-A9FW-01 2 136389287 136389287 G A R3HDM1 Splice_Site p.X166_splice 0.25 TCGA-CC-A9FW-01 2 165754999 165754999 T C SLC38A11 Missense_Mutation p.H390R 0.23 tolerated(0.44) benign(0.001) TCGA-CC-A9FW-01 2 209188869 209188869 A G PIKFYVE Missense_Mutation p.R732G 0.24 deleterious(0.01) probably_damaging(0.966) TCGA-CC-A9FW-01 2 212537964 212537964 C T ERBB4 Silent p.E547E 0.22 TCGA-CC-A9FW-01 2 220115164 220115164 G A TUBA4A Silent p.S419S 0.52 TCGA-CC-A9FW-01 2 220404725 220404725 C T CHPF Missense_Mutation p.V570M 0.54 deleterious(0.01) benign(0.322) TCGA-CC-A9FW-01 2 220502422 220502422 C A SLC4A3 Missense_Mutation p.S912R 0.30 tolerated(0.44) benign(0.074) TCGA-CC-A9FW-01 2 230924025 230924025 C T SLC16A14 Missense_Mutation p.G15D 0.54 tolerated_low_confidence(1) benign(0) TCGA-CC-A9FW-01 2 24286185 24286185 G A FKBP1B 3'UTR 0.30 TCGA-CC-A9FW-01 2 26951035 26951035 G A KCNK3 Missense_Mutation p.A262T 0.34 deleterious(0.03) benign(0.032) TCGA-CC-A9FW-01 2 27530547 27530547 G T UCN Missense_Mutation p.L73I 0.23 tolerated_low_confidence(0.39) benign(0) TCGA-CC-A9FW-01 2 5837059 5837059 G C SOX11 3'UTR 0.39 TCGA-CC-A9FW-01 2 64862963 64862963 A - SERTAD2 3'UTR 0.27 TCGA-CC-A9FW-01 2 85066420 85066420 G A TRABD2A Missense_Mutation p.P233S 0.43 tolerated(0.24) benign(0.432) TCGA-CC-A9FW-01 2 85779044 85779059 GGATGTGCGCTGAAAG - GGCX Frame_Shift_Del p.F496Gfs*6 0.43 TCGA-CC-A9FW-01 2 9533683 9533683 G C ASAP2 Missense_Mutation p.S864T 0.44 tolerated(0.25) benign(0.031) TCGA-CC-A9FW-01 3 119378986 119378986 C T POPDC2 Silent p.L95L 0.25 TCGA-CC-A9FW-01 3 12791298 12791298 C A TMEM40 Missense_Mutation p.D12Y 0.16 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-CC-A9FW-01 3 128813830 128813830 G C RAB43 Missense_Mutation p.I129M 0.31 tolerated(0.07) probably_damaging(0.981) TCGA-CC-A9FW-01 3 155560395 155560396 - A SLC33A1 Frame_Shift_Ins p.W264Lfs*136 0.14 TCGA-CC-A9FW-01 3 179066588 179066588 A G MFN1 Intron 0.35 TCGA-CC-A9FW-01 3 19190040 19190040 A T KCNH8 5'UTR 0.11 TCGA-CC-A9FW-01 3 195509739 195509739 T C MUC4 Silent p.S2904S 0.11 TCGA-CC-A9FW-01 3 197238829 197238829 C A BDH1 Missense_Mutation p.W323C 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-CC-A9FW-01 3 39166927 39166927 G T TTC21A Missense_Mutation p.M440I 0.38 tolerated(0.09) benign(0.002) TCGA-CC-A9FW-01 3 41266104 41266104 G T CTNNB1 Missense_Mutation p.G34V 0.37 deleterious(0) probably_damaging(0.998) TCGA-CC-A9FW-01 3 47894359 47894359 A G MAP4 3'UTR 0.28 TCGA-CC-A9FW-01 3 49145928 49145928 G C USP19 3'Flank 0.43 TCGA-CC-A9FW-01 3 49161060 49161060 C A LAMB2 Nonsense_Mutation p.E1268* 0.32 TCGA-CC-A9FW-01 3 49700524 49700524 C - BSN Frame_Shift_Del p.H3645Tfs*150 0.27 TCGA-CC-A9FW-01 3 49828186 49828186 T C CDHR4 3'UTR 0.34 TCGA-CC-A9FW-01 3 50328069 50328069 C G IFRD2 Missense_Mutation p.D98H 0.24 deleterious(0) probably_damaging(0.993) TCGA-CC-A9FW-01 3 52255747 52255747 C A TLR9 Missense_Mutation p.G1016V 0.42 tolerated(0.54) probably_damaging(0.979) TCGA-CC-A9FW-01 3 58121724 58121724 A C FLNB Missense_Mutation p.K1595Q 0.28 deleterious(0.02) benign(0.069) TCGA-CC-A9FW-01 3 93762021 93762021 A T ARL13B Nonsense_Mutation p.K321* 0.32 TCGA-CC-A9FW-01 4 167020562 167020562 A T TLL1 Missense_Mutation p.E930D 0.66 deleterious(0.02) possibly_damaging(0.906) TCGA-CC-A9FW-01 4 17804952 17804952 T C DCAF16 3'UTR 0.48 TCGA-CC-A9FW-01 4 6052342 6052342 C A JAKMIP1 Missense_Mutation p.S624I 0.70 tolerated(0.08) possibly_damaging(0.678) TCGA-CC-A9FW-01 4 73184296 73184296 C G ADAMTS3 Missense_Mutation p.C493S 0.70 deleterious(0.01) probably_damaging(0.991) TCGA-CC-A9FW-01 5 110409265 110409265 G T TSLP Silent p.A91A 0.42 TCGA-CC-A9FW-01 5 112175910 112175910 A G APC Missense_Mutation p.E1540G 0.39 probably_damaging(0.998) TCGA-CC-A9FW-01 5 13866346 13866346 T A DNAH5 Missense_Mutation p.R1367W 0.19 possibly_damaging(0.675) TCGA-CC-A9FW-01 5 140782595 140782595 G T PCDHGA9 Missense_Mutation p.A26S 0.34 tolerated_low_confidence(0.3) benign(0.018) TCGA-CC-A9FW-01 5 141021270 141021270 G A FCHSD1 Missense_Mutation p.P669L 0.41 deleterious(0) unknown(0) TCGA-CC-A9FW-01 5 146777290 146777290 C A DPYSL3 Missense_Mutation p.R581L 0.47 deleterious(0) probably_damaging(0.988) TCGA-CC-A9FW-01 5 16701801 16701801 C T MYO10 Silent p.Q901Q 0.23 TCGA-CC-A9FW-01 5 19473323 19473323 A G CDH18 3'UTR 0.34 TCGA-CC-A9FW-01 5 218226 218226 G A CCDC127 5'UTR 0.28 TCGA-CC-A9FW-01 5 41019095 41019095 G A MROH2B Nonsense_Mutation p.Q823* 0.33 TCGA-CC-A9FW-01 5 484645 484645 C T SLC9A3 Missense_Mutation p.A308T 0.46 deleterious(0) possibly_damaging(0.861) TCGA-CC-A9FW-01 5 79854670 79854670 A T ANKRD34B Missense_Mutation p.L390H 0.07 tolerated(0.55) possibly_damaging(0.599) TCGA-CC-A9FW-01 5 96100971 96100971 G A CAST Missense_Mutation p.S619N 0.36 deleterious(0) possibly_damaging(0.864) TCGA-CC-A9FW-01 6 111680114 111680114 A T REV3L Missense_Mutation p.I2328N 0.52 deleterious(0) probably_damaging(0.974) TCGA-CC-A9FW-01 6 135375909 135375909 C A HBS1L 5'UTR 0.19 TCGA-CC-A9FW-01 6 24495386 24495386 C T ALDH5A1 Silent p.L54L 0.38 TCGA-CC-A9FW-01 6 26123951 26123951 C A HIST1H2BC Missense_Mutation p.G61V 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.461) TCGA-CC-A9FW-01 6 27805803 27805803 C A HIST1H2AK Missense_Mutation p.Q105H 0.47 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CC-A9FW-01 6 28402493 28402493 A G ZSCAN23 Missense_Mutation p.C307R 0.22 deleterious(0) probably_damaging(1) TCGA-CC-A9FW-01 6 33156817 33156817 C G COL11A2 Missense_Mutation p.Q127H 0.26 probably_damaging(0.988) TCGA-CC-A9FW-01 6 33261574 33261574 C T RGL2 Silent p.Q502Q 0.55 TCGA-CC-A9FW-01 6 51907825 51907825 T C PKHD1 Missense_Mutation p.N977D 0.22 tolerated(0.15) probably_damaging(0.914) TCGA-CC-A9FW-01 6 96661975 96661975 T C FUT9 3'UTR 0.44 TCGA-CC-A9FW-01 6 96663131 96663131 G A FUT9 3'UTR 0.15 TCGA-CC-A9FW-01 6 97711249 97711249 G A MMS22L Missense_Mutation p.H302Y 0.06 tolerated(0.09) benign(0.009) TCGA-CC-A9FW-01 7 102953197 102953197 A C PMPCB 3'UTR 0.33 TCGA-CC-A9FW-01 7 111517205 111517205 T G DOCK4 Missense_Mutation p.Y542S 0.25 deleterious(0) probably_damaging(0.996) TCGA-CC-A9FW-01 7 114655850 114655850 G T MDFIC Missense_Mutation p.C310F 0.23 deleterious(0) probably_damaging(0.999) TCGA-CC-A9FW-01 7 121653253 121653253 G T PTPRZ1 Missense_Mutation p.G1385C 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.503) TCGA-CC-A9FW-01 7 127992475 127992475 A C PRRT4 Missense_Mutation p.L379V 0.17 tolerated(0.14) benign(0.341) TCGA-CC-A9FW-01 7 133986857 133986857 C T SLC35B4 Missense_Mutation p.S117N 0.36 tolerated(0.16) benign(0.019) TCGA-CC-A9FW-01 7 148515060 148515060 T A EZH2 Silent p.T383T 0.42 TCGA-CC-A9FW-01 7 150488705 150488705 C A TMEM176B Nonsense_Mutation p.E243* 0.33 TCGA-CC-A9FW-01 7 150656867 150656867 G A KCNH2 Intron 0.21 TCGA-CC-A9FW-01 7 48428794 48428794 C T ABCA13 Silent p.N3877N 0.35 TCGA-CC-A9FW-01 8 110305580 110305580 T G NUDCD1 Missense_Mutation p.K211N 0.16 tolerated(0.53) benign(0.005) TCGA-CC-A9FW-01 8 124089437 124089437 A C TBC1D31 Missense_Mutation p.D55A 0.45 deleterious(0) possibly_damaging(0.688) TCGA-CC-A9FW-01 8 134147018 134147018 T A TG Missense_Mutation p.S2763T 0.32 tolerated_low_confidence(0.14) benign(0.155) TCGA-CC-A9FW-01 8 145058158 145058174 GCTCCCAGGGAGCCCTA - PARP10 Splice_Site p.X593_splice 0.33 TCGA-CC-A9FW-01 8 39022641 39022641 A C ADAM32 Missense_Mutation p.E253D 0.59 tolerated(0.29) possibly_damaging(0.822) TCGA-CC-A9FW-01 8 39022655 39022655 T C ADAM32 Missense_Mutation p.F258S 0.61 deleterious(0) probably_damaging(1) TCGA-CC-A9FW-01 9 135202688 135202688 T G SETX Missense_Mutation p.T1433P 0.69 tolerated(0.17) benign(0.003) TCGA-CC-A9FW-01 9 93375723 93375723 G A DIRAS2 Silent p.R129R 0.54 TCGA-CC-A9FW-01 9 96024181 96024181 C T WNK2 Missense_Mutation p.S1051L 0.20 unknown(0) TCGA-CC-A9FW-01 X 12736481 12736481 A G FRMPD4 Missense_Mutation p.K1179R 0.82 tolerated_low_confidence(0.06) benign(0.394) TCGA-CC-A9FW-01 X 20179839 20179839 C A RPS6KA3 Nonsense_Mutation p.E628* 0.78 TCGA-CC-A9FW-01 X 69425085 69425085 T C DGAT2L6 3'UTR 0.37 TCGA-CC-A9FW-01 X 78012373 78012373 G T LPAR4 3'UTR 0.81 TCGA-CC-A9FW-01 X 85403711 85403711 C A DACH2 Nonsense_Mutation p.Y29* 0.85 TCGA-CC-A9FW-01 X 92928252 92928252 C A NAP1L3 Missense_Mutation p.A18S 0.85 deleterious_low_confidence(0.03) benign(0.446) TCGA-CC-A9FW-01 Y 21871366 21871366 T A KDM5D Missense_Mutation p.E971D 0.42 tolerated(0.22) possibly_damaging(0.866) TCGA-DD-A113-01 10 117607492 117607492 T A ATRNL1 Silent p.P1336P 0.31 TCGA-DD-A113-01 10 29599920 29599920 C A LYZL1 Missense_Mutation p.Q173K 0.55 tolerated(0.88) benign(0.113) TCGA-DD-A113-01 10 49661391 49661391 T C ARHGAP22 Missense_Mutation p.N331S 0.06 deleterious(0.04) probably_damaging(0.91) TCGA-DD-A113-01 10 88768547 88768547 C T RP11-96C23.10 3'Flank 0.03 TCGA-DD-A113-01 10 97447351 97447351 T A TCTN3 Missense_Mutation p.R209W 0.55 deleterious(0) probably_damaging(0.977) TCGA-DD-A113-01 11 111934789 111934789 T C DLAT 3'UTR 0.09 TCGA-DD-A113-01 11 1586842 1586842 G A DUSP8 Missense_Mutation p.P72L 0.20 tolerated(0.22) benign(0.408) TCGA-DD-A113-01 11 36597714 36597714 G T RAG1 Missense_Mutation p.G954C 0.40 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DD-A113-01 11 4676698 4676698 A G OR51E1 3'UTR 0.71 TCGA-DD-A113-01 11 55587248 55587248 T C OR5D18 Missense_Mutation p.V48A 0.06 tolerated(0.61) benign(0.003) TCGA-DD-A113-01 11 56113637 56113637 T C OR8K1 Silent p.Y41Y 0.07 TCGA-DD-A113-01 11 56949315 56949315 G C LRRC55 5'UTR 0.45 TCGA-DD-A113-01 11 57317551 57317551 T G SMTNL1 Missense_Mutation p.V502G 0.45 deleterious(0) probably_damaging(1) TCGA-DD-A113-01 11 59947427 59947427 G T MS4A6A Silent p.I81I 0.51 TCGA-DD-A113-01 11 6566486 6566486 T A DNHD1 Silent p.P1439P 0.26 TCGA-DD-A113-01 11 6638385 6638385 C T TPP1 Splice_Site p.X170_splice 0.42 TCGA-DD-A113-01 11 70333710 70333710 C T SHANK2 Silent p.P897P 0.25 TCGA-DD-A113-01 11 92565042 92565042 C T FAT3 Missense_Mutation p.P3246S 0.29 probably_damaging(0.964) TCGA-DD-A113-01 11 93911635 93911635 T C PANX1 Missense_Mutation p.F141S 0.06 deleterious(0) probably_damaging(1) TCGA-DD-A113-01 12 117696859 117696859 C A NOS1 Missense_Mutation p.G815V 0.24 deleterious(0) probably_damaging(1) TCGA-DD-A113-01 12 124399402 124399402 G T DNAH10 Missense_Mutation p.W3408C 0.16 probably_damaging(1) TCGA-DD-A113-01 12 39973407 39973407 T A ABCD2 Missense_Mutation p.M603L 0.55 tolerated(0.74) benign(0.001) TCGA-DD-A113-01 12 40745384 40745384 G A LRRK2 Missense_Mutation p.R2142K 0.05 tolerated(0.13) benign(0.006) TCGA-DD-A113-01 12 43769288 43769288 A T ADAMTS20 Missense_Mutation p.F1780L 0.05 tolerated(0.11) benign(0.276) TCGA-DD-A113-01 12 57599015 57599015 A G LRP1 Missense_Mutation p.E3773G 0.22 possibly_damaging(0.699) TCGA-DD-A113-01 12 9020503 9020503 G A A2ML1 Silent p.E1261E 0.38 TCGA-DD-A113-01 13 108882865 108882865 A G ABHD13 3'UTR 0.42 TCGA-DD-A113-01 13 110804702 110804702 A G COL4A1 Missense_Mutation p.I1636T 0.40 unknown(0) TCGA-DD-A113-01 13 28498525 28498525 C T PDX1 Missense_Mutation p.A180V 0.79 deleterious(0) probably_damaging(1) TCGA-DD-A113-01 13 28519559 28519559 C G ATP5EP2 3'UTR 0.78 TCGA-DD-A113-01 13 46701650 46701670 CTTGAATCATCCCTGGAGCAT - LCP1 3'UTR 0.67 TCGA-DD-A113-01 13 48881512 48881512 G A RB1 Nonsense_Mutation p.W78* 0.74 TCGA-DD-A113-01 13 95131263 95131263 G A DCT Missense_Mutation p.R83C 0.47 deleterious(0) probably_damaging(1) TCGA-DD-A113-01 14 105174811 105174811 G A INF2 Missense_Mutation p.A592T 0.19 tolerated(0.55) unknown(0) TCGA-DD-A113-01 14 105716439 105716439 C T BTBD6 Silent p.G296G 0.63 TCGA-DD-A113-01 14 24780969 24780969 G A LTB4R2 3'UTR 0.29 TCGA-DD-A113-01 14 29237217 29237217 C A FOXG1 Silent p.R244R 0.26 TCGA-DD-A113-01 14 45716510 45716510 C T MIS18BP1 5'UTR 0.55 TCGA-DD-A113-01 14 51087446 51087446 T A ATL1 Splice_Site p.X330_splice 0.49 TCGA-DD-A113-01 14 69814760 69814760 A T GALNT16 Intron 0.56 TCGA-DD-A113-01 14 75513372 75513372 C - MLH3 Frame_Shift_Del p.G996Efs*10 0.17 TCGA-DD-A113-01 14 75614379 75614379 T G TMED10 Missense_Mutation p.K133N 0.47 deleterious(0.02) probably_damaging(0.952) TCGA-DD-A113-01 14 95918595 95918595 C T SYNE3 Silent p.Q421Q 0.24 TCGA-DD-A113-01 15 35212596 35212596 C A AQR Missense_Mutation p.L386F 0.45 tolerated(0.06) possibly_damaging(0.466) TCGA-DD-A113-01 15 39909936 39909936 C T FSIP1 Missense_Mutation p.D567N 0.53 tolerated(0.08) benign(0.313) TCGA-DD-A113-01 15 41247963 41247963 G A CHAC1 Silent p.A262A 0.28 TCGA-DD-A113-01 15 42115228 42115228 G A MAPKBP1 Missense_Mutation p.A1142T 0.54 tolerated(0.27) benign(0.002) TCGA-DD-A113-01 15 48470360 48470360 C T MYEF2 Silent p.P25P 0.22 TCGA-DD-A113-01 15 86810275 86810275 A G AGBL1 Silent p.S556S 0.56 TCGA-DD-A113-01 15 93198581 93198581 G T FAM174B Silent p.T103T 0.10 TCGA-DD-A113-01 16 15931795 15931795 C T MYH11 Silent p.L105L 0.46 TCGA-DD-A113-01 16 30958514 30958514 G A FBXL19 Missense_Mutation p.R683H 0.43 tolerated(0.15) possibly_damaging(0.848) TCGA-DD-A113-01 16 31426269 31426269 G A ITGAD Missense_Mutation p.R747H 0.46 tolerated(0.06) benign(0.064) TCGA-DD-A113-01 16 4641701 4641701 A T C16orf96 Missense_Mutation p.E876V 0.16 deleterious(0) possibly_damaging(0.607) TCGA-DD-A113-01 16 726998 726998 C T RHBDL1 Missense_Mutation p.R217C 0.16 tolerated(0.06) possibly_damaging(0.543) TCGA-DD-A113-01 17 28530206 28530206 G A SLC6A4 Missense_Mutation p.P601L 0.07 deleterious(0) probably_damaging(0.917) TCGA-DD-A113-01 17 33680372 33680372 A G SLFN11 Silent p.P635P 0.05 TCGA-DD-A113-01 17 33925274 33925274 A T AP2B1 Missense_Mutation p.E21D 0.42 tolerated(0.26) benign(0.006) TCGA-DD-A113-01 17 40766524 40766524 G A TUBG1 Missense_Mutation p.S336N 0.09 deleterious(0) probably_damaging(0.999) TCGA-DD-A113-01 17 47677798 47677798 A T SPOP Missense_Mutation p.L356Q 0.49 deleterious(0) probably_damaging(0.999) TCGA-DD-A113-01 17 48617654 48617654 C T EPN3 Missense_Mutation p.P313L 0.10 tolerated(0.16) benign(0.004) TCGA-DD-A113-01 17 66270184 66270184 C T SLC16A6 Missense_Mutation p.R87H 0.38 tolerated(0.07) benign(0.126) TCGA-DD-A113-01 17 73915917 73915917 C A FBF1 Missense_Mutation p.R642L 0.36 deleterious(0) possibly_damaging(0.902) TCGA-DD-A113-01 17 76120679 76120679 G T TMC6 Missense_Mutation p.P273T 0.34 tolerated(0.3) benign(0.003) TCGA-DD-A113-01 17 80047248 80047248 C A FASN Nonsense_Mutation p.E660* 0.16 TCGA-DD-A113-01 18 29800250 29800250 G A MEP1B 3'UTR 0.12 TCGA-DD-A113-01 18 32843982 32843982 C T ZSCAN30 Missense_Mutation p.R112Q 0.05 tolerated(0.72) benign(0.008) TCGA-DD-A113-01 18 47500944 47500944 C T MYO5B Silent p.G366G 0.38 TCGA-DD-A113-01 19 12014498 12014498 G C ZNF69 Missense_Mutation p.R44S 0.57 deleterious(0.01) benign(0.267) TCGA-DD-A113-01 19 18709391 18709391 G A CRLF1 Missense_Mutation p.T183I 0.23 tolerated(0.17) probably_damaging(0.926) TCGA-DD-A113-01 19 20003414 20003414 A G ZNF253 Missense_Mutation p.K453R 0.09 deleterious(0.04) benign(0.054) TCGA-DD-A113-01 19 36278140 36278140 G A ARHGAP33 Silent p.P730P 0.46 TCGA-DD-A113-01 19 38314619 38314619 C T AC016582.2 RNA 0.58 TCGA-DD-A113-01 19 39329152 39329152 C T HNRNPL Missense_Mutation p.R481Q 0.37 deleterious(0) probably_damaging(0.925) TCGA-DD-A113-01 19 39395721 39395721 C A NFKBIB Silent p.A82A 0.40 TCGA-DD-A113-01 19 4361758 4361758 C G SH3GL1 Missense_Mutation p.D316H 0.82 deleterious(0) probably_damaging(1) TCGA-DD-A113-01 19 53008031 53008031 G A ZNF578 Missense_Mutation p.V63M 0.47 deleterious(0) benign(0.022) TCGA-DD-A113-01 19 54844833 54844833 C A LILRA4 3'UTR 0.06 TCGA-DD-A113-01 19 9047545 9047545 G T MUC16 Silent p.P11362P 0.07 TCGA-DD-A113-01 19 9074278 9074278 G A MUC16 Nonsense_Mutation p.Q4390* 0.09 TCGA-DD-A113-01 19 9362317 9362317 T C OR7E24 Missense_Mutation p.S200P 0.06 tolerated(0.24) probably_damaging(0.988) TCGA-DD-A113-01 1 108315394 108315394 T G VAV3 Missense_Mutation p.Y173S 0.09 deleterious(0) probably_damaging(1) TCGA-DD-A113-01 1 11562021 11562021 T G PTCHD2 Missense_Mutation p.D324E 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-DD-A113-01 1 118454654 118454654 C T GDAP2 Missense_Mutation p.R174H 0.77 deleterious(0) possibly_damaging(0.768) TCGA-DD-A113-01 1 155720106 155720106 A - GON4L 3'UTR 0.17 TCGA-DD-A113-01 1 156255314 156255314 A T TMEM79 Silent p.P99P 0.27 TCGA-DD-A113-01 1 157670351 157670351 C T FCRL3 5'UTR 0.30 TCGA-DD-A113-01 1 158059385 158059385 G A KIRREL Missense_Mutation p.V380M 0.26 deleterious(0) probably_damaging(0.993) TCGA-DD-A113-01 1 158369189 158369189 T C OR10T2 Missense_Mutation p.E23G 0.09 tolerated(0.11) benign(0.05) TCGA-DD-A113-01 1 172100413 172100413 G C DNM3 Missense_Mutation p.W548C 0.35 deleterious(0) probably_damaging(0.999) TCGA-DD-A113-01 1 183085929 183085929 A G LAMC1 Silent p.E485E 0.25 TCGA-DD-A113-01 1 186648333 186648333 G A PTGS2 Missense_Mutation p.P57L 0.07 deleterious(0) possibly_damaging(0.891) TCGA-DD-A113-01 1 186948491 186948491 G T PLA2G4A Missense_Mutation p.D669Y 0.34 deleterious(0) probably_damaging(0.996) TCGA-DD-A113-01 1 202104642 202104642 C G ARL8A Missense_Mutation p.G129R 0.25 deleterious(0) probably_damaging(1) TCGA-DD-A113-01 1 237905615 237905615 A T RYR2 Missense_Mutation p.D3704V 0.20 benign(0.065) TCGA-DD-A113-01 1 247024552 247024553 - T AHCTF1 Frame_Shift_Ins p.C1270Mfs*8 0.22 TCGA-DD-A113-01 1 249211815 249211815 G A PGBD2 Silent p.L344L 0.23 TCGA-DD-A113-01 1 39798959 39798959 A T MACF1 Intron 0.81 TCGA-DD-A113-01 1 45120780 45120780 C A TMEM53 Missense_Mutation p.E95D 0.82 tolerated(0.09) probably_damaging(0.977) TCGA-DD-A113-01 1 62237159 62237159 A T INADL Missense_Mutation p.D194V 0.11 deleterious(0) probably_damaging(1) TCGA-DD-A113-01 1 9097670 9097670 A G SLC2A5 Missense_Mutation p.L494P 0.10 tolerated(0.18) benign(0.087) TCGA-DD-A113-01 20 3673312 3673312 G A SIGLEC1 Missense_Mutation p.H1296Y 0.09 tolerated(0.06) benign(0.139) TCGA-DD-A113-01 20 3673732 3673732 G A SIGLEC1 Silent p.G1185G 0.49 TCGA-DD-A113-01 20 40049753 40049753 T A CHD6 Missense_Mutation p.D1841V 0.59 deleterious_low_confidence(0) benign(0.302) TCGA-DD-A113-01 20 58467323 58467323 G A SYCP2 Nonsense_Mutation p.Q696* 0.48 TCGA-DD-A113-01 20 62577849 62577849 C T UCKL1 Nonsense_Mutation p.W87* 0.16 TCGA-DD-A113-01 20 9525047 9525047 T A PAK7 Missense_Mutation p.E613V 0.66 deleterious(0) probably_damaging(1) TCGA-DD-A113-01 21 22664428 22664428 G A NCAM2 Silent p.R162R 0.07 TCGA-DD-A113-01 21 30354673 30354673 A G LTN1 Silent p.L244L 0.48 TCGA-DD-A113-01 21 34067440 34067440 C T SYNJ1 Missense_Mutation p.R250Q 0.33 deleterious(0) probably_damaging(1) TCGA-DD-A113-01 22 41173261 41173261 T C SLC25A17 Missense_Mutation p.K190E 0.37 deleterious(0) probably_damaging(0.974) TCGA-DD-A113-01 22 44112732 44112732 A - EFCAB6 Frame_Shift_Del p.L293Hfs*30 0.27 TCGA-DD-A113-01 22 50876004 50876004 G C PPP6R2 Missense_Mutation p.E559Q 0.36 deleterious(0) probably_damaging(0.993) TCGA-DD-A113-01 2 112786337 112786337 G C MERTK Missense_Mutation p.G966R 0.33 tolerated_low_confidence(0.12) benign(0.093) TCGA-DD-A113-01 2 130914864 130914864 C T SMPD4 Missense_Mutation p.A392T 0.22 tolerated(0.37) benign(0.013) TCGA-DD-A113-01 2 145147427 145147427 G T ZEB2 Missense_Mutation p.S1079Y 0.08 deleterious(0) possibly_damaging(0.88) TCGA-DD-A113-01 2 153496548 153496548 T A FMNL2 Missense_Mutation p.L1008Q 0.51 possibly_damaging(0.883) TCGA-DD-A113-01 2 165948928 165948928 T C SCN3A Missense_Mutation p.D1548G 0.50 deleterious(0) probably_damaging(0.998) TCGA-DD-A113-01 2 179510675 179510675 A T TTN Missense_Mutation p.D13460E 0.05 TCGA-DD-A113-01 2 1946902 1946902 A T MYT1L Missense_Mutation p.D119E 0.05 tolerated(1) unknown(0) TCGA-DD-A113-01 2 196674472 196674472 C T DNAH7 Silent p.R3295R 0.30 TCGA-DD-A113-01 2 201677965 201677965 C T BZW1 Missense_Mutation p.P41S 0.53 deleterious(0) probably_damaging(1) TCGA-DD-A113-01 2 21228862 21228862 A C APOB Silent p.T3626T 0.31 TCGA-DD-A113-01 2 220404778 220404778 C T CHPF Missense_Mutation p.R552H 0.46 tolerated(0.54) possibly_damaging(0.666) TCGA-DD-A113-01 2 237998516 237998516 A G COPS8 Silent p.E70E 0.54 TCGA-DD-A113-01 2 89901341 89901341 C T IGKV1D-39 Silent p.L9L 0.54 TCGA-DD-A113-01 2 97285440 97285440 G C KANSL3 Missense_Mutation p.S149C 0.52 deleterious(0.03) probably_damaging(0.925) TCGA-DD-A113-01 3 111860036 111860036 C A SLC9C1 3'UTR 0.42 TCGA-DD-A113-01 3 123166600 123166600 G T ADCY5 Missense_Mutation p.P265T 0.25 tolerated(0.66) benign(0.002) TCGA-DD-A113-01 3 149589886 149589886 C T RNF13 Missense_Mutation p.S89L 0.17 tolerated(0.54) benign(0.001) TCGA-DD-A113-01 3 178742743 178742743 G T ZMAT3 3'UTR 0.46 TCGA-DD-A113-01 3 181431636 181431636 T - SOX2 3'UTR 0.27 TCGA-DD-A113-01 3 183056602 183056602 T G MCF2L2 Missense_Mutation p.K158Q 0.37 deleterious(0.04) possibly_damaging(0.641) TCGA-DD-A113-01 3 189700835 189700835 C T LEPREL1 Missense_Mutation p.G442S 0.06 deleterious(0.04) possibly_damaging(0.542) TCGA-DD-A113-01 3 195709034 195709034 C A SDHAP1 Intron 0.16 TCGA-DD-A113-01 3 4726834 4726834 C T ITPR1 Missense_Mutation p.R1201W 0.44 deleterious(0) probably_damaging(0.999) TCGA-DD-A113-01 3 49145886 49145886 G A USP19 3'Flank 0.27 TCGA-DD-A113-01 3 56681065 56681065 C T FAM208A Missense_Mutation p.G567D 0.49 deleterious(0.03) benign(0.3) TCGA-DD-A113-01 3 9703950 9703950 G A MTMR14 Splice_Site p.X103_splice 0.20 TCGA-DD-A113-01 4 101401081 101401081 A T EMCN Silent p.T60T 0.07 TCGA-DD-A113-01 4 122078361 122078361 C A TNIP3 Missense_Mutation p.R161I 0.37 deleterious(0.01) possibly_damaging(0.804) TCGA-DD-A113-01 4 129752910 129752910 G C JADE1 5'UTR 0.77 TCGA-DD-A113-01 4 3230361 3230361 G T HTT Missense_Mutation p.W2623L 0.48 benign(0.271) TCGA-DD-A113-01 4 39878616 39878616 C T PDS5A Missense_Mutation p.R717Q 0.07 tolerated(0.41) possibly_damaging(0.556) TCGA-DD-A113-01 5 102613862 102613862 T G C5orf30 3'UTR 0.10 TCGA-DD-A113-01 5 135231424 135231424 G A IL9 Silent p.L28L 0.10 TCGA-DD-A113-01 5 139915024 139915024 G A ANKHD1 Missense_Mutation p.G2310R 0.40 probably_damaging(0.996) TCGA-DD-A113-01 5 167643791 167643791 A G TENM2 Missense_Mutation p.N1366S 0.36 tolerated(0.37) benign(0.014) TCGA-DD-A113-01 5 31297484 31297484 A G CDH6 Silent p.G204G 0.43 TCGA-DD-A113-01 5 38406944 38406944 T A EGFLAM Silent p.P281P 0.06 TCGA-DD-A113-01 5 43446540 43446540 A C C5orf28 Silent p.L144L 0.06 TCGA-DD-A113-01 5 7773143 7773143 G A ADCY2 Silent p.V771V 0.46 TCGA-DD-A113-01 5 89933635 89933635 C A GPR98 Missense_Mutation p.P704T 0.08 benign(0) TCGA-DD-A113-01 6 125402633 125402633 G T RNF217 Missense_Mutation p.G220V 0.09 deleterious(0.01) possibly_damaging(0.541) TCGA-DD-A113-01 6 144765510 144765510 G T UTRN Nonsense_Mutation p.E536* 0.71 TCGA-DD-A113-01 6 146865246 146865246 G A RAB32 Nonsense_Mutation p.W80* 0.13 TCGA-DD-A113-01 6 152631939 152631939 T G SYNE1 Missense_Mutation p.T5594P 0.09 benign(0.037) TCGA-DD-A113-01 6 152756914 152756914 A T SYNE1 Intron 0.34 TCGA-DD-A113-01 6 30071337 30071337 C A TRIM31 Missense_Mutation p.W418C 0.52 tolerated_low_confidence(0.17) unknown(0) TCGA-DD-A113-01 6 32010105 32010105 A C TNXB Missense_Mutation p.F511C 0.29 deleterious(0) probably_damaging(0.993) TCGA-DD-A113-01 6 41738507 41738507 C A FRS3 Missense_Mutation p.M443I 0.40 tolerated(0.3) benign(0) TCGA-DD-A113-01 6 49754008 49754008 A T PGK2 Missense_Mutation p.V298D 0.46 deleterious(0.02) benign(0.009) TCGA-DD-A113-01 6 70917033 70917033 C G COL19A1 3'UTR 0.18 TCGA-DD-A113-01 6 71298368 71298368 G C C6orf57 Missense_Mutation p.G90R 0.42 deleterious(0) probably_damaging(0.999) TCGA-DD-A113-01 6 74161889 74161889 C T MB21D1 Missense_Mutation p.G6R 0.24 tolerated_low_confidence(0.06) benign(0.013) TCGA-DD-A113-01 6 76599823 76599823 T G MYO6 Missense_Mutation p.V903G 0.38 deleterious(0.02) unknown(0) TCGA-DD-A113-01 6 90053437 90053437 C A UBE2J1 Missense_Mutation p.D24Y 0.77 deleterious(0) probably_damaging(0.934) TCGA-DD-A113-01 7 113518905 113518905 C G PPP1R3A Missense_Mutation p.E748Q 0.34 deleterious(0.01) probably_damaging(0.939) TCGA-DD-A113-01 7 114655974 114655974 T C MDFIC Silent p.I351I 0.40 TCGA-DD-A113-01 7 140156621 140156621 C A MKRN1 Missense_Mutation p.V273L 0.35 deleterious(0) benign(0.224) TCGA-DD-A113-01 7 142639989 142639989 G A KEL Silent p.D638D 0.06 TCGA-DD-A113-01 7 148963616 148963616 G T ZNF783 Missense_Mutation p.G72V 0.33 deleterious(0.04) probably_damaging(0.998) TCGA-DD-A113-01 7 17833732 17833732 C T SNX13 Silent p.K937K 0.05 TCGA-DD-A113-01 7 2946211 2946211 C T CARD11 3'UTR 0.42 TCGA-DD-A113-01 7 44553006 44553006 G C NPC1L1 3'UTR 0.17 TCGA-DD-A113-01 7 53104219 53104219 C T POM121L12 Silent p.L285L 0.59 TCGA-DD-A113-01 7 6189266 6189266 C - USP42 Frame_Shift_Del p.M481Cfs*32 0.17 TCGA-DD-A113-01 7 7571014 7571014 C T COL28A1 Missense_Mutation p.D216N 0.33 deleterious(0) probably_damaging(0.996) TCGA-DD-A113-01 7 83590481 83590481 C T SEMA3A 3'UTR 0.40 TCGA-DD-A113-01 7 90355912 90355912 G T CDK14 Missense_Mutation p.C34F 0.06 deleterious_low_confidence(0) benign(0) TCGA-DD-A113-01 7 99817335 99817335 G T PVRIG Splice_Site 0.43 TCGA-DD-A113-01 8 131793001 131793001 G A ADCY8 Nonsense_Mutation p.Q1131* 0.25 TCGA-DD-A113-01 8 145540247 145540247 G A DGAT1 Silent p.L479L 0.45 TCGA-DD-A113-01 8 53569525 53569525 C T RB1CC1 Missense_Mutation p.R955Q 0.04 deleterious_low_confidence(0.01) benign(0.01) TCGA-DD-A113-01 8 71646369 71646369 A G XKR9 Missense_Mutation p.I278V 0.05 tolerated(0.47) benign(0.01) TCGA-DD-A113-01 8 86126117 86126117 C T E2F5 3'UTR 0.11 TCGA-DD-A113-01 8 86572219 86572219 G A REXO1L1P 3'UTR 0.12 TCGA-DD-A113-01 8 98289467 98289467 C T TSPYL5 Missense_Mutation p.M202I 0.08 deleterious(0.01) possibly_damaging(0.87) TCGA-DD-A113-01 9 116082738 116082738 G C WDR31 Missense_Mutation p.P227A 0.51 deleterious(0.03) probably_damaging(0.983) TCGA-DD-A113-01 9 120466694 120466694 G T TLR4 5'UTR 0.38 TCGA-DD-A113-01 9 131140322 131140322 G A URM1 Missense_Mutation p.A15T 0.10 tolerated(0.1) probably_damaging(0.939) TCGA-DD-A113-01 9 136379801 136379801 G T TMEM8C Missense_Mutation p.P208Q 0.45 deleterious(0) probably_damaging(0.976) TCGA-DD-A113-01 9 14307000 14307000 C T NFIB Missense_Mutation p.V184M 0.52 tolerated(0.05) probably_damaging(0.987) TCGA-DD-A113-01 9 17787406 17787406 C A SH3GL2 Silent p.A120A 0.18 TCGA-DD-A113-01 9 25677928 25677928 C T TUSC1 Missense_Mutation p.R131Q 0.22 tolerated(0.56) benign(0.029) TCGA-DD-A113-01 9 2718691 2718691 C T KCNV2 Silent p.L318L 0.10 TCGA-DD-A113-01 9 27228230 27228230 G T TEK Missense_Mutation p.R1076L 0.28 deleterious(0.01) benign(0.363) TCGA-DD-A113-01 9 33351695 33351695 G A NFX1 Silent p.Q854Q 0.18 TCGA-DD-A113-01 9 88934568 88934568 T A ZCCHC6 Missense_Mutation p.I1016F 0.25 tolerated(0.25) benign(0.017) TCGA-DD-A113-01 9 91991876 91991876 G T SEMA4D 3'UTR 0.34 TCGA-DD-A113-01 X 100105359 100105359 G A NOX1 Missense_Mutation p.S305F 0.55 tolerated(0.12) possibly_damaging(0.905) TCGA-DD-A113-01 X 107834827 107834827 C T COL4A5 Missense_Mutation p.P459L 0.27 unknown(0) TCGA-DD-A113-01 X 109695251 109695251 T C RGAG1 Missense_Mutation p.M469T 0.08 tolerated(1) benign(0.004) TCGA-DD-A113-01 X 110439120 110439120 T C PAK3 Silent p.D423D 0.51 TCGA-DD-A113-01 X 111699130 111699130 C T ZCCHC16 3'UTR 0.49 TCGA-DD-A113-01 X 113965762 113965762 C G HTR2C Missense_Mutation p.A32G 0.07 tolerated_low_confidence(0.06) benign(0.09) TCGA-DD-A113-01 X 117752664 117752664 T G DOCK11 Missense_Mutation p.H1148Q 0.10 deleterious(0) probably_damaging(0.939) TCGA-DD-A113-01 X 144910537 144910537 G T TMEM257 3'UTR 0.20 TCGA-DD-A113-01 X 148690383 148690383 C T TMEM185A Silent p.P118P 0.22 TCGA-DD-A113-01 X 151393310 151393310 T C GABRA3 Missense_Mutation p.I187V 0.27 tolerated(0.21) benign(0.015) TCGA-DD-A113-01 X 153657461 153657461 T A ATP6AP1 Missense_Mutation p.Y77N 0.18 deleterious(0) probably_damaging(0.993) TCGA-DD-A113-01 X 21550127 21550127 T C CNKSR2 Silent p.Y415Y 0.19 TCGA-DD-A113-01 X 34962850 34962850 C T FAM47B Silent p.Y634Y 0.07 TCGA-DD-A113-01 X 36083792 36083792 A T CHDC2 5'UTR 0.26 TCGA-DD-A113-01 X 43741550 43741550 C T MAOB 5'UTR 0.13 TCGA-DD-A113-01 X 77218361 77218361 A G ATP7A Intron 0.26 TCGA-DD-A114-01 10 106959776 106959776 C T SORCS3 Missense_Mutation p.L677F 0.21 tolerated(0.88) benign(0.206) TCGA-DD-A114-01 10 3146084 3146084 G A PFKP Missense_Mutation p.A190T 0.23 deleterious(0) probably_damaging(0.99) TCGA-DD-A114-01 10 42947128 42947128 A G CCNYL2 RNA 0.29 TCGA-DD-A114-01 10 6470193 6470193 G T PRKCQ Silent p.P699P 0.19 TCGA-DD-A114-01 10 98715171 98715171 G - LCOR Frame_Shift_Del p.E266Sfs*14 0.15 TCGA-DD-A114-01 11 10875696 10875696 C G ZBED5 Missense_Mutation p.R266T 0.06 deleterious(0.02) possibly_damaging(0.799) TCGA-DD-A114-01 11 114453455 114453455 G A NXPE4 Missense_Mutation p.R129C 0.14 tolerated(0.2) benign(0.025) TCGA-DD-A114-01 11 118896705 118896705 C A SLC37A4 Missense_Mutation p.R319L 0.12 tolerated(0.2) benign(0.066) TCGA-DD-A114-01 11 123598880 123598880 A G ZNF202 Missense_Mutation p.Y265H 0.05 tolerated(0.29) probably_damaging(0.999) TCGA-DD-A114-01 11 123600353 123600353 C A ZNF202 Nonsense_Mutation p.E195* 0.08 TCGA-DD-A114-01 11 14280941 14280941 C G RP11-21L19.1 3'Flank 0.12 TCGA-DD-A114-01 11 17632361 17632361 G T OTOG Silent p.T1850T 0.13 TCGA-DD-A114-01 11 18232242 18232242 C A RP11-113D6.10 Intron 0.14 TCGA-DD-A114-01 11 22297639 22297639 G - ANO5 Splice_Site p.X805_splice 0.08 TCGA-DD-A114-01 11 40137653 40137653 G T LRRC4C Silent p.R64R 0.13 TCGA-DD-A114-01 11 4825512 4825512 C A OR52R1 Silent p.P33P 0.16 TCGA-DD-A114-01 11 55135486 55135486 T C OR4A15 Silent p.L43L 0.15 TCGA-DD-A114-01 11 55999981 55999981 A C OR5T2 Silent p.S227S 0.14 TCGA-DD-A114-01 11 89537604 89537604 C - TRIM49 Frame_Shift_Del p.E12Nfs*8 0.12 TCGA-DD-A114-01 12 105464456 105464456 A G ALDH1L2 Missense_Mutation p.F107S 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.85) TCGA-DD-A114-01 12 124387605 124387605 G A DNAH10 Missense_Mutation p.E3136K 0.19 possibly_damaging(0.483) TCGA-DD-A114-01 12 29617463 29617463 G T OVCH1 Missense_Mutation p.T701N 0.14 deleterious(0) probably_damaging(0.989) TCGA-DD-A114-01 12 32137832 32137832 G T KIAA1551 Nonsense_Mutation p.E1315* 0.14 TCGA-DD-A114-01 12 39726715 39726715 C G KIF21A Silent p.T894T 0.20 TCGA-DD-A114-01 12 49443882 49443882 C A KMT2D Silent p.V1163V 0.15 TCGA-DD-A114-01 12 50236856 50236856 C A BCDIN3D Silent p.T5T 0.16 TCGA-DD-A114-01 12 52910560 52910560 C A KRT5 Nonsense_Mutation p.E434* 0.15 TCGA-DD-A114-01 12 7981450 7981450 C A SLC2A14 Nonsense_Mutation p.E199* 0.13 TCGA-DD-A114-01 12 81763113 81763113 G T PPFIA2 Intron 0.17 TCGA-DD-A114-01 12 91497878 91497878 G T LUM 3'UTR 0.26 TCGA-DD-A114-01 12 96406996 96406996 T G LTA4H Missense_Mutation p.Y450S 0.14 tolerated(0.3) benign(0.009) TCGA-DD-A114-01 13 23904756 23904756 C A SACS Missense_Mutation p.C4420F 0.22 benign(0.255) TCGA-DD-A114-01 13 49030478 49030479 - A RB1 Frame_Shift_Ins p.V654Sfs*14 0.21 TCGA-DD-A114-01 13 76111799 76111799 C A COMMD6 Splice_Site p.X18_splice 0.15 TCGA-DD-A114-01 13 86370026 86370026 G T SLITRK6 Missense_Mutation p.H206Q 0.18 deleterious(0.04) probably_damaging(0.998) TCGA-DD-A114-01 14 103430853 103430853 G T CDC42BPB Missense_Mutation p.N904K 0.22 tolerated(0.28) possibly_damaging(0.582) TCGA-DD-A114-01 14 23889251 23889251 C - MYH7 Frame_Shift_Del p.D1177Tfs*37 0.17 TCGA-DD-A114-01 14 62551067 62551067 A T SYT16 Missense_Mutation p.S530C 0.20 deleterious(0) probably_damaging(0.969) TCGA-DD-A114-01 14 92949118 92949118 G T SLC24A4 Missense_Mutation p.E450D 0.15 tolerated(0.07) possibly_damaging(0.516) TCGA-DD-A114-01 15 22473044 22473044 C T IGHV4OR15-8 Missense_Mutation p.S76N 0.04 tolerated(0.24) benign(0.004) TCGA-DD-A114-01 15 48634006 48634006 A G DUT Intron 0.20 TCGA-DD-A114-01 16 18887682 18887682 C T SMG1 Missense_Mutation p.V552M 0.22 deleterious(0.03) benign(0.034) TCGA-DD-A114-01 16 2098719 2098719 C T TSC2 Nonsense_Mutation p.Q35* 0.23 TCGA-DD-A114-01 16 2256103 2256103 G C MLST8 Missense_Mutation p.G6A 0.35 deleterious_low_confidence(0.02) benign(0.018) TCGA-DD-A114-01 16 68027109 68027109 G T DPEP2 Missense_Mutation p.P3T 0.28 tolerated_low_confidence(0.11) benign(0.031) TCGA-DD-A114-01 16 81927388 81927388 G T PLCG2 Missense_Mutation p.R354L 0.16 deleterious(0) possibly_damaging(0.782) TCGA-DD-A114-01 17 27251239 27251239 C A PHF12 Missense_Mutation p.D135Y 0.21 deleterious(0.01) possibly_damaging(0.862) TCGA-DD-A114-01 17 38289863 38289868 CAGGAA - MSL1 In_Frame_Del p.Q282_E283del 0.16 TCGA-DD-A114-01 17 39522752 39522752 C A KRT33B Missense_Mutation p.E186D 0.20 tolerated(0.12) probably_damaging(0.98) TCGA-DD-A114-01 17 43195840 43195840 C A PLCD3 Missense_Mutation p.M311I 0.39 deleterious(0.01) benign(0.031) TCGA-DD-A114-01 17 45017921 45017921 G T GOSR2 Missense_Mutation p.G195V 0.33 deleterious(0) benign(0.077) TCGA-DD-A114-01 17 56582859 56582859 C A MTMR4 Silent p.V359V 0.16 TCGA-DD-A114-01 17 61972346 61972346 G A CSH1 3'UTR 0.16 TCGA-DD-A114-01 17 63532595 63532595 G A AXIN2 Silent p.L662L 0.14 TCGA-DD-A114-01 17 7577534 7577534 C A TP53 Missense_Mutation p.R249S 0.20 deleterious(0) probably_damaging(0.994) TCGA-DD-A114-01 17 76671945 76671945 G A CYTH1 3'UTR 0.20 TCGA-DD-A114-01 18 34647292 34647292 G C KIAA1328 Missense_Mutation p.R339P 0.15 tolerated(0.23) benign(0.239) TCGA-DD-A114-01 18 43460188 43460188 C A EPG5 Missense_Mutation p.S1840I 0.19 deleterious(0.01) probably_damaging(0.975) TCGA-DD-A114-01 18 58039123 58039123 C A MC4R Missense_Mutation p.A154S 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-DD-A114-01 18 61308143 61308143 T C SERPINB4 Missense_Mutation p.K145R 0.16 tolerated(0.07) benign(0.079) TCGA-DD-A114-01 18 6138293 6138293 T C L3MBTL4 Missense_Mutation p.T367A 0.08 tolerated(0.59) benign(0) TCGA-DD-A114-01 18 72775861 72775861 C T ZNF407 Missense_Mutation p.P2062S 0.13 tolerated(0.08) benign(0.049) TCGA-DD-A114-01 19 11213382 11213382 G T LDLR Missense_Mutation p.R78L 0.18 tolerated(0.12) benign(0.249) TCGA-DD-A114-01 19 30935048 30935048 C T ZNF536 Silent p.R193R 0.26 TCGA-DD-A114-01 19 32902324 32902324 C T DPY19L3 Intron 0.18 TCGA-DD-A114-01 19 38974064 38974064 G A RYR1 Silent p.V1614V 0.17 TCGA-DD-A114-01 19 42132051 42132051 G T CEACAM4 Missense_Mutation p.D116E 0.18 deleterious(0) probably_damaging(0.994) TCGA-DD-A114-01 19 45391367 45391367 G T PVRL2 Nonsense_Mutation p.E450* 0.22 TCGA-DD-A114-01 19 46318184 46318184 C A RSPH6A Missense_Mutation p.G84V 0.08 deleterious_low_confidence(0.03) benign(0.053) TCGA-DD-A114-01 19 49920647 49920647 C A CCDC155 Silent p.I523I 0.25 TCGA-DD-A114-01 19 53761860 53761860 T G VN1R2 Missense_Mutation p.S78A 0.19 deleterious_low_confidence(0.01) benign(0) TCGA-DD-A114-01 19 58216279 58216279 A T ZNF154 Silent p.A34A 0.11 TCGA-DD-A114-01 19 58967236 58967236 G T ZNF324B Missense_Mutation p.G309C 0.14 deleterious(0) probably_damaging(1) TCGA-DD-A114-01 19 8842140 8842140 C A OR2Z1 Silent p.L250L 0.15 TCGA-DD-A114-01 19 9324917 9324917 C T OR7D4 Silent p.L199L 0.16 TCGA-DD-A114-01 1 11832211 11832211 C A C1orf167 Missense_Mutation p.A652D 0.15 deleterious(0.02) unknown(0) TCGA-DD-A114-01 1 153390678 153390678 C A S100A7A Missense_Mutation p.F40L 0.36 deleterious(0) probably_damaging(0.992) TCGA-DD-A114-01 1 181688911 181688911 G A CACNA1E Missense_Mutation p.V555M 0.10 deleterious(0) possibly_damaging(0.86) TCGA-DD-A114-01 1 182458241 182458241 G T RGSL1 Nonsense_Mutation p.E541* 0.14 TCGA-DD-A114-01 1 185274712 185274712 C A IVNS1ABP Missense_Mutation p.A241S 0.36 tolerated(0.59) benign(0.005) TCGA-DD-A114-01 1 247902194 247902194 T A OR14K1 Missense_Mutation p.L93Q 0.14 tolerated(0.22) benign(0.253) TCGA-DD-A114-01 1 248458244 248458244 G T OR2T12 Missense_Mutation p.L213M 0.16 tolerated(0.05) probably_damaging(0.995) TCGA-DD-A114-01 1 28218576 28218576 C A RPA2 3'UTR 0.12 TCGA-DD-A114-01 1 36614938 36614938 C T TRAPPC3 Missense_Mutation p.M14I 0.14 tolerated(0.81) benign(0) TCGA-DD-A114-01 1 45795060 45795060 C A MUTYH Missense_Mutation p.R520L 0.16 deleterious(0.03) benign(0.002) TCGA-DD-A114-01 1 46485312 46485312 G A MAST2 Silent p.Q411Q 0.15 TCGA-DD-A114-01 1 47150044 47150044 C A EFCAB14 Intron 0.22 TCGA-DD-A114-01 1 6520166 6520166 G T ESPN Missense_Mutation p.R842L 0.19 deleterious(0) probably_damaging(0.998) TCGA-DD-A114-01 1 75037157 75037157 C A C1orf173 Nonsense_Mutation p.E1413* 0.12 TCGA-DD-A114-01 1 75672190 75672190 G A SLC44A5 3'UTR 0.19 TCGA-DD-A114-01 1 78407772 78407772 T A NEXN Missense_Mutation p.M513K 0.14 deleterious(0) probably_damaging(0.997) TCGA-DD-A114-01 20 3025397 3025397 C T GNRH2 Missense_Mutation p.P76L 0.10 tolerated(0.29) benign(0) TCGA-DD-A114-01 20 31948050 31948050 T A CDK5RAP1 Intron 0.16 TCGA-DD-A114-01 20 37154091 37154091 G C RALGAPB Missense_Mutation p.R611P 0.17 deleterious(0) probably_damaging(0.999) TCGA-DD-A114-01 20 46279951 46279951 G T NCOA3 Missense_Mutation p.D1293Y 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-DD-A114-01 20 62340061 62340061 G T ZGPAT Silent p.L43L 0.20 TCGA-DD-A114-01 21 11020854 11020854 G T BAGE2 RNA 0.06 TCGA-DD-A114-01 21 31869199 31869199 C A KRTAP19-4 Missense_Mutation p.R77I 0.13 tolerated_low_confidence(0.14) unknown(0) TCGA-DD-A114-01 21 43802158 43802158 A G TMPRSS3 Intron 0.10 TCGA-DD-A114-01 22 31534717 31534717 G T PLA2G3 Missense_Mutation p.Q195K 0.18 deleterious(0) possibly_damaging(0.74) TCGA-DD-A114-01 22 40343142 40343142 C A GRAP2 Missense_Mutation p.A11D 0.26 deleterious(0) probably_damaging(0.999) TCGA-DD-A114-01 2 10925030 10925030 G A ATP6V1C2 3'Flank 0.12 TCGA-DD-A114-01 2 128335798 128335798 G T MYO7B Nonsense_Mutation p.E314* 0.14 TCGA-DD-A114-01 2 128395020 128395020 C A MYO7B 3'UTR 0.17 TCGA-DD-A114-01 2 171260816 171260816 G T MYO3B Silent p.P779P 0.20 TCGA-DD-A114-01 2 179484372 179484372 C A TTN Missense_Mutation p.A15558S 0.15 TCGA-DD-A114-01 2 27327386 27327386 T A CGREF1 Intron 0.10 TCGA-DD-A114-01 2 73677972 73677972 C T ALMS1 Nonsense_Mutation p.Q1439* 0.10 TCGA-DD-A114-01 2 73800105 73800105 C T ALMS1 Missense_Mutation p.H3700Y 0.12 benign(0.425) TCGA-DD-A114-01 3 10967702 10967702 C A SLC6A11 Missense_Mutation p.A378D 0.20 deleterious(0) probably_damaging(0.932) TCGA-DD-A114-01 3 158323100 158323100 G C MLF1 3'UTR 0.20 TCGA-DD-A114-01 3 168819859 168819859 G A MECOM Silent p.R797R 0.16 TCGA-DD-A114-01 3 185986694 185986694 C G DGKG Missense_Mutation p.A338P 0.10 tolerated(0.21) benign(0.346) TCGA-DD-A114-01 3 49151699 49151699 G C USP19 Missense_Mutation p.P769A 0.19 deleterious(0) probably_damaging(1) TCGA-DD-A114-01 3 49394940 49394940 C T GPX1 Missense_Mutation p.E165K 0.17 deleterious(0.02) probably_damaging(0.954) TCGA-DD-A114-01 3 52546358 52546358 C T STAB1 Missense_Mutation p.A962V 0.13 deleterious(0) probably_damaging(0.992) TCGA-DD-A114-01 4 4199717 4199717 A G OTOP1 Missense_Mutation p.S282P 0.17 deleterious(0) probably_damaging(0.998) TCGA-DD-A114-01 4 74853684 74853684 G T PPBP Missense_Mutation p.A46E 0.22 tolerated(1) benign(0) TCGA-DD-A114-01 5 140250040 140250040 C A PCDHA11 Missense_Mutation p.A451E 0.07 deleterious_low_confidence(0) possibly_damaging(0.842) TCGA-DD-A114-01 5 140250371 140250371 G A PCDHA11 Silent p.A561A 0.15 TCGA-DD-A114-01 5 146435232 146435232 T C PPP2R2B Silent p.T25T 0.10 TCGA-DD-A114-01 5 149213132 149213132 C T PPARGC1B Missense_Mutation p.P499L 0.21 tolerated(0.06) possibly_damaging(0.851) TCGA-DD-A114-01 5 156768087 156768087 G T CYFIP2 Silent p.R839R 0.17 TCGA-DD-A114-01 5 175717117 175717117 G T SIMC1 Intron 0.13 TCGA-DD-A114-01 5 74047313 74047313 C T GFM2 Missense_Mutation p.D104N 0.13 tolerated(0.11) probably_damaging(0.996) TCGA-DD-A114-01 6 106978191 106978191 G T AIM1 Splice_Site p.X1165_splice 0.22 TCGA-DD-A114-01 6 28122535 28122535 A G ZKSCAN8 3'UTR 0.29 TCGA-DD-A114-01 6 31322048 31322048 G T HLA-B 3'UTR 0.13 TCGA-DD-A114-01 6 43230655 43230655 T A TTBK1 Missense_Mutation p.V518E 0.17 possibly_damaging(0.461) TCGA-DD-A114-01 7 100677499 100677499 G T MUC17 Silent p.T934T 0.04 TCGA-DD-A114-01 7 105254791 105254791 T C ATXN7L1 Missense_Mutation p.T664A 0.18 tolerated(0.34) benign(0.002) TCGA-DD-A114-01 7 133314872 133314872 G T EXOC4 Missense_Mutation p.V498F 0.15 tolerated(0.36) benign(0.257) TCGA-DD-A114-01 7 18633535 18633535 G A HDAC9 Missense_Mutation p.A183T 0.16 tolerated(0.79) possibly_damaging(0.857) TCGA-DD-A114-01 7 76062261 76062261 G T ZP3 Missense_Mutation p.S150I 0.20 deleterious(0) probably_damaging(0.995) TCGA-DD-A114-01 7 82435139 82435139 G A PCLO Missense_Mutation p.P4933L 0.09 unknown(0) TCGA-DD-A114-01 8 102611376 102611376 G A GRHL2 Silent p.A365A 0.21 TCGA-DD-A114-01 8 139838990 139838990 C A COL22A1 Missense_Mutation p.A294S 0.25 unknown(0) TCGA-DD-A114-01 8 17198946 17198946 C T MTMR7 Missense_Mutation p.E220K 0.26 deleterious(0.02) benign(0.07) TCGA-DD-A114-01 8 25898461 25898461 T G EBF2 Missense_Mutation p.S116R 0.09 deleterious(0.01) probably_damaging(0.942) TCGA-DD-A114-01 8 69104749 69104749 C A PREX2 Missense_Mutation p.S1531R 0.08 deleterious(0) benign(0.374) TCGA-DD-A114-01 8 99560362 99560362 T A STK3 Missense_Mutation p.M354L 0.21 tolerated(0.25) benign(0.005) TCGA-DD-A114-01 9 135413022 135413022 C T C9orf171 Missense_Mutation p.R223W 0.20 deleterious(0) probably_damaging(0.997) TCGA-DD-A114-01 9 71396609 71396609 A T FAM122A 3'UTR 0.20 TCGA-DD-A114-01 X 12939183 12939183 T C TLR8 Missense_Mutation p.M675T 0.34 tolerated(0.53) benign(0.001) TCGA-DD-A114-01 X 48814841 48814841 T C OTUD5 5'UTR 0.39 TCGA-DD-A114-01 X 54955568 54955598 GTTTCAGCAGTGAAGCCAGCATTAGCTTTGG - TRO Frame_Shift_Del p.S804Mfs*140 0.37 TCGA-DD-A114-01 X 62570624 62570624 G A SPIN4 Silent p.H25H 0.51 TCGA-DD-A114-01 X 6451682 6451682 A T VCX3A 3'UTR 0.19 TCGA-DD-A114-01 X 75004287 75004287 C T MAGEE2 Nonsense_Mutation p.W200* 0.23 TCGA-DD-A114-01 X 85218969 85218969 C G CHM Missense_Mutation p.D135H 0.20 tolerated(0.08) benign(0.002) TCGA-DD-A114-01 X 91090988 91090988 C T PCDH11X Missense_Mutation p.A162V 0.43 tolerated(0.27) benign(0.086) TCGA-DD-A115-01 10 134751175 134751175 G T TTC40 Missense_Mutation p.L181I 0.70 deleterious(0) probably_damaging(0.994) TCGA-DD-A115-01 10 22048461 22048461 T A DNAJC1 Missense_Mutation p.T412S 0.33 tolerated(0.06) probably_damaging(0.938) TCGA-DD-A115-01 10 27352965 27352965 C A ANKRD26 Missense_Mutation p.G439W 0.38 deleterious(0.01) probably_damaging(0.947) TCGA-DD-A115-01 10 49939462 49939462 G T WDFY4 Silent p.G479G 0.29 TCGA-DD-A115-01 10 70231709 70231709 A G DNA2 Silent p.A57A 0.08 TCGA-DD-A115-01 10 70652470 70652470 T C STOX1 Missense_Mutation p.L983P 0.42 deleterious(0) probably_damaging(0.963) TCGA-DD-A115-01 10 77167385 77167385 C A RP11-399K21.14 5'Flank 0.10 TCGA-DD-A115-01 11 108172499 108172499 A G ATM Missense_Mutation p.R1768G 0.15 deleterious(0) benign(0.339) TCGA-DD-A115-01 11 22360043 22360043 T C SLC17A6 5'UTR 0.15 TCGA-DD-A115-01 11 4703712 4703712 A T OR51E2 Missense_Mutation p.M77K 0.50 deleterious(0) possibly_damaging(0.48) TCGA-DD-A115-01 11 4968139 4976752 11:4968139-4976752 - OR51A2 large deletion 0.20 TCGA-DD-A115-01 11 61919460 61919460 G T INCENP 3'UTR 0.40 TCGA-DD-A115-01 11 66249912 66249912 G T DPP3 Missense_Mutation p.A81S 0.19 tolerated(0.73) benign(0.001) TCGA-DD-A115-01 11 76858899 76858899 C G MYO7A Missense_Mutation p.S63W 0.43 deleterious(0) probably_damaging(1) TCGA-DD-A115-01 12 120602144 120602144 T C GCN1L1 Missense_Mutation p.H615R 0.38 benign(0.416) TCGA-DD-A115-01 12 121013648 121013648 A T RNF10 Missense_Mutation p.N752Y 0.10 tolerated(0.08) possibly_damaging(0.781) TCGA-DD-A115-01 12 122623457 122623457 G A MLXIP Missense_Mutation p.R827Q 0.06 tolerated(0.25) benign(0.421) TCGA-DD-A115-01 12 12871889 12871889 G A CDKN1B Splice_Site 0.52 TCGA-DD-A115-01 12 54757477 54757477 G A GPR84 Silent p.T53T 0.40 TCGA-DD-A115-01 12 56708752 56708752 T C CNPY2 Splice_Site p.X30_splice 0.38 TCGA-DD-A115-01 12 70960239 70960239 C G PTPRB Missense_Mutation p.E1294Q 0.41 tolerated(0.32) benign(0.031) TCGA-DD-A115-01 12 8086448 8086448 G T SLC2A3 Missense_Mutation p.F22L 0.35 tolerated(0.81) benign(0.028) TCGA-DD-A115-01 13 103381888 103381888 C T CCDC168 Silent p.K2424K 0.08 TCGA-DD-A115-01 14 102466376 102466376 G A DYNC1H1 Silent p.G1285G 0.38 TCGA-DD-A115-01 14 105416248 105416248 T C AHNAK2 Missense_Mutation p.D1847G 0.22 probably_damaging(0.943) TCGA-DD-A115-01 14 24517998 24517998 T C LRRC16B 5'Flank 0.36 TCGA-DD-A115-01 14 91925046 91925046 G A SMEK1 3'UTR 0.16 TCGA-DD-A115-01 15 101098944 101098944 C A RNU6-181P 3'Flank 0.19 TCGA-DD-A115-01 15 40268641 40268641 C T EIF2AK4 Silent p.C615C 0.55 TCGA-DD-A115-01 15 41860523 41860523 C A TYRO3 Missense_Mutation p.P357H 0.11 deleterious(0) probably_damaging(0.928) TCGA-DD-A115-01 15 63991120 63991120 T C HERC1 Missense_Mutation p.N1571S 0.16 benign(0) TCGA-DD-A115-01 15 69548133 69548133 G T GLCE Intron 0.23 TCGA-DD-A115-01 15 77134131 77134131 C T SCAPER Missense_Mutation p.A113T 0.57 deleterious(0) probably_damaging(0.928) TCGA-DD-A115-01 16 16244451 16244451 C A ABCC6 Missense_Mutation p.V1463L 0.46 tolerated(0.1) possibly_damaging(0.568) TCGA-DD-A115-01 16 27517278 27517278 G T GTF3C1 Missense_Mutation p.A571E 0.40 tolerated(1) benign(0.009) TCGA-DD-A115-01 16 70891690 70891690 G T HYDIN Silent p.V4071V 0.32 TCGA-DD-A115-01 16 71823203 71823203 G A AP1G1 Silent p.G60G 0.46 TCGA-DD-A115-01 16 71823204 71823204 C A AP1G1 Missense_Mutation p.G60V 0.45 deleterious(0) probably_damaging(1) TCGA-DD-A115-01 17 15642100 15642100 C T TBC1D26 Silent p.H151H 0.47 TCGA-DD-A115-01 17 56355395 56355395 G A MPO Missense_Mutation p.L333F 0.43 deleterious(0) probably_damaging(0.989) TCGA-DD-A115-01 17 58013587 58013587 A T RPS6KB1 Missense_Mutation p.R330S 0.59 deleterious(0) probably_damaging(0.96) TCGA-DD-A115-01 17 60743465 60743465 C T MRC2 Silent p.T177T 0.64 TCGA-DD-A115-01 17 67521065 67521065 C T MAP2K6 Silent p.L229L 0.56 TCGA-DD-A115-01 17 73738509 73738509 A G ITGB4 Silent p.E907E 0.08 TCGA-DD-A115-01 17 78091993 78091993 G T GAA Missense_Mutation p.G828V 0.40 tolerated(0.26) benign(0.004) TCGA-DD-A115-01 17 79409035 79409035 G A RP11-1055B8.7 Silent p.V220V 0.21 TCGA-DD-A115-01 17 80615904 80615904 G - RAB40B Frame_Shift_Del p.F225Sfs*7 0.24 TCGA-DD-A115-01 19 17038989 17038989 G A CPAMD8 Missense_Mutation p.P1114L 0.40 tolerated(0.1) benign(0.021) TCGA-DD-A115-01 19 39421984 39421984 G A MRPS12 Splice_Site p.X17_splice 0.08 TCGA-DD-A115-01 19 52001391 52001391 C A SIGLEC12 Missense_Mutation p.G429V 0.27 deleterious(0.01) probably_damaging(0.968) TCGA-DD-A115-01 19 52538685 52538685 C T ZNF432 Missense_Mutation p.E83K 0.38 tolerated(1) benign(0) TCGA-DD-A115-01 19 55386823 55386823 T C FCAR Splice_Site p.X24_splice 0.48 TCGA-DD-A115-01 19 5844841 5844841 G A FUT3 Silent p.L4L 0.11 TCGA-DD-A115-01 19 9580387 9580387 C T ZNF560 Splice_Site p.X150_splice 0.15 TCGA-DD-A115-01 1 154988092 154988092 G A ZBTB7B Missense_Mutation p.S353N 0.18 tolerated(0.08) possibly_damaging(0.542) TCGA-DD-A115-01 1 161017651 161017651 A T ARHGAP30 Missense_Mutation p.S1054T 0.43 deleterious_low_confidence(0.02) benign(0.055) TCGA-DD-A115-01 1 16356554 16356554 G A CLCNKA Silent p.G464G 0.07 TCGA-DD-A115-01 1 228487124 228487124 G A OBSCN Missense_Mutation p.V4459M 0.39 benign(0.422) TCGA-DD-A115-01 1 24082423 24082423 G C TCEB3 Missense_Mutation p.E654Q 0.10 deleterious(0) possibly_damaging(0.867) TCGA-DD-A115-01 1 247615107 247615107 G T OR2B11 Missense_Mutation p.H60N 0.38 deleterious(0.03) benign(0.016) TCGA-DD-A115-01 1 247615108 247615108 G T OR2B11 Silent p.L59L 0.38 TCGA-DD-A115-01 1 38453345 38453345 C T SF3A3 Missense_Mutation p.R68Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-DD-A115-01 1 47028365 47028365 C T MKNK1 Missense_Mutation p.A307T 0.22 tolerated(0.62) benign(0.004) TCGA-DD-A115-01 1 6522204 6522204 G A TNFRSF25 Missense_Mutation p.H268Y 0.31 tolerated(0.15) possibly_damaging(0.844) TCGA-DD-A115-01 1 93599749 93599749 A - MTF2 Frame_Shift_Del p.Y474Lfs*43 0.40 TCGA-DD-A115-01 20 1532400 1532400 A G SIRPD Missense_Mutation p.F120L 0.32 tolerated(0.08) benign(0.306) TCGA-DD-A115-01 20 50346419 50346419 T A ATP9A Missense_Mutation p.N56I 0.35 deleterious(0) probably_damaging(0.995) TCGA-DD-A115-01 20 5844104 5844104 C G C20orf196 Missense_Mutation p.L205V 0.10 deleterious_low_confidence(0.04) possibly_damaging(0.899) TCGA-DD-A115-01 20 9401994 9401994 G T PLCB4 Missense_Mutation p.E723D 0.40 deleterious(0) probably_damaging(0.998) TCGA-DD-A115-01 21 39086700 39086700 G A KCNJ6 Missense_Mutation p.P254S 0.19 deleterious(0) probably_damaging(0.984) TCGA-DD-A115-01 22 23237760 23237760 C A IGLL5 Missense_Mutation p.S177R 0.35 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-DD-A115-01 22 29694814 29694814 G A EWSR1 Silent p.R508R 0.34 TCGA-DD-A115-01 2 101580593 101580593 T C NPAS2 Silent p.V224V 0.35 TCGA-DD-A115-01 2 152684642 152684642 C A ARL5A Intron 0.42 TCGA-DD-A115-01 2 152732958 152732958 C G CACNB4 Missense_Mutation p.R168T 0.42 tolerated(0.18) benign(0.357) TCGA-DD-A115-01 2 172691267 172691267 C A SLC25A12 Missense_Mutation p.G241C 0.19 deleterious(0.02) probably_damaging(0.992) TCGA-DD-A115-01 2 1946920 1946920 G A MYT1L Silent p.D113D 0.06 TCGA-DD-A115-01 2 202633600 202633600 T G ALS2 Silent p.S3S 0.27 TCGA-DD-A115-01 2 242343251 242343251 C T FARP2 Silent p.C64C 0.21 TCGA-DD-A115-01 2 70315174 70315174 T A PCBP1 Missense_Mutation p.L100Q 0.33 deleterious(0.01) probably_damaging(0.964) TCGA-DD-A115-01 2 71043634 71043634 C G CLEC4F Missense_Mutation p.Q293H 0.06 deleterious(0) probably_damaging(0.914) TCGA-DD-A115-01 2 71215838 71215838 G A TEX261 Silent p.V161V 0.40 TCGA-DD-A115-01 2 80101327 80101327 A G CTNNA2 Silent p.R237R 0.09 TCGA-DD-A115-01 3 101283884 101283884 G A TRMT10C Missense_Mutation p.D87N 0.31 deleterious(0.02) benign(0.023) TCGA-DD-A115-01 3 101481359 101481360 - A CEP97 Frame_Shift_Ins p.F619Ifs*34 0.18 TCGA-DD-A115-01 3 111313353 111313353 G - ZBED2 5'UTR 0.28 TCGA-DD-A115-01 3 120469757 120469757 G A GTF2E1 Missense_Mutation p.D120N 0.53 tolerated(0.11) benign(0.175) TCGA-DD-A115-01 3 12195189 12195189 G - TIMP4 Frame_Shift_Del p.C168Vfs*31 0.27 TCGA-DD-A115-01 3 129275500 129275500 A G PLXND1 Missense_Mutation p.M1874T 0.36 deleterious(0) possibly_damaging(0.574) TCGA-DD-A115-01 3 32915309 32915309 G A TRIM71 Splice_Site p.X285_splice 0.15 TCGA-DD-A115-01 4 148538943 148538943 A C TMEM184C 5'UTR 0.50 TCGA-DD-A115-01 4 1823931 1823931 C T LETM1 Missense_Mutation p.A529T 0.11 deleterious(0.05) possibly_damaging(0.653) TCGA-DD-A115-01 4 76861223 76861223 C A NAAA Missense_Mutation p.G101V 0.35 deleterious(0) probably_damaging(0.988) TCGA-DD-A115-01 4 77230589 77230589 G T FAM47E-STBD1 Missense_Mutation p.E171D 0.37 tolerated(0.13) benign(0.055) TCGA-DD-A115-01 4 79503384 79503384 G A ANXA3 Missense_Mutation p.M84I 0.41 tolerated(1) benign(0.009) TCGA-DD-A115-01 5 139193051 139193051 G T PSD2 Nonsense_Mutation p.E177* 0.52 TCGA-DD-A115-01 5 140249239 140249239 C T PCDHA11 Missense_Mutation p.T184I 0.16 tolerated_low_confidence(0.09) benign(0.222) TCGA-DD-A115-01 5 159343853 159343853 C T ADRA1B 5'UTR 0.30 TCGA-DD-A115-01 5 166711893 166711893 C T TENM2 Silent p.G17G 0.29 TCGA-DD-A115-01 5 42713546 42713546 G A GHR Nonsense_Mutation p.W267* 0.33 TCGA-DD-A115-01 5 73168941 73168941 C T ARHGEF28 Missense_Mutation p.P895L 0.32 deleterious(0) probably_damaging(1) TCGA-DD-A115-01 6 10894136 10894136 G T SYCP2L Nonsense_Mutation p.G39* 0.38 TCGA-DD-A115-01 6 27799305 27799305 T G HIST1H4K Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0.02) unknown(0) TCGA-DD-A115-01 6 29556102 29556102 C A OR2H2 Silent p.P127P 0.37 TCGA-DD-A115-01 6 41738386 41738386 G C FRS3 Missense_Mutation p.R484G 0.35 deleterious(0) probably_damaging(0.999) TCGA-DD-A115-01 6 43418506 43418506 A G DLK2 Missense_Mutation p.V308A 0.25 deleterious(0.04) benign(0.002) TCGA-DD-A115-01 6 46672428 46672428 G C PLA2G7 Missense_Mutation p.H399D 0.51 tolerated(0.38) benign(0.001) TCGA-DD-A115-01 6 49753721 49753721 T A PGK2 Missense_Mutation p.T394S 0.47 deleterious(0.01) possibly_damaging(0.815) TCGA-DD-A115-01 7 142612521 142612521 G A TRPV5 Silent p.R414R 0.38 TCGA-DD-A115-01 7 28547332 28547332 C A CREB5 Missense_Mutation p.Q90K 0.11 tolerated(0.51) possibly_damaging(0.84) TCGA-DD-A115-01 7 2984169 2984169 C G CARD11 Missense_Mutation p.E121Q 0.16 deleterious(0) probably_damaging(0.928) TCGA-DD-A115-01 7 48311639 48311639 A G ABCA13 Silent p.K792K 0.12 TCGA-DD-A115-01 8 101960838 101960838 A T YWHAZ Missense_Mutation p.C94S 0.07 deleterious_low_confidence(0.02) probably_damaging(0.983) TCGA-DD-A115-01 8 82606130 82606130 G A SLC10A5 Silent p.L360L 0.28 TCGA-DD-A115-01 9 111631196 111631196 C A IKBKAP 3'UTR 0.29 TCGA-DD-A115-01 9 136582451 136582451 G T SARDH Missense_Mutation p.P383T 0.34 deleterious(0) probably_damaging(0.956) TCGA-DD-A115-01 9 27949442 27949442 G T LINGO2 Missense_Mutation p.P410T 0.14 deleterious(0) probably_damaging(0.999) TCGA-DD-A115-01 9 90272970 90272970 G A DAPK1 Silent p.A617A 0.31 TCGA-DD-A115-01 9 91617770 91617770 C T S1PR3 3'UTR 0.23 TCGA-DD-A115-01 X 105152837 105152837 C A NRK Missense_Mutation p.Q403K 0.12 tolerated(0.08) benign(0.104) TCGA-DD-A115-01 X 70680629 70680629 A G TAF1 Missense_Mutation p.H1812R 0.76 tolerated_low_confidence(0.21) benign(0.003) TCGA-DD-A116-01 10 112343665 112343665 G A SMC3 Missense_Mutation p.E346K 0.32 tolerated(0.4) benign(0.241) TCGA-DD-A116-01 10 117228753 117228753 T C ATRNL1 Missense_Mutation p.S1190P 0.47 deleterious(0) probably_damaging(0.997) TCGA-DD-A116-01 10 123971198 123971200 AAG - TACC2 In_Frame_Del p.K2423del 0.35 TCGA-DD-A116-01 10 135025348 135025348 G T KNDC1 Missense_Mutation p.G1408C 0.53 deleterious(0) probably_damaging(0.967) TCGA-DD-A116-01 10 17277863 17277863 A T VIM Silent p.P416P 0.39 TCGA-DD-A116-01 10 30986388 30986388 C T SVILP1 RNA 0.33 TCGA-DD-A116-01 10 32667519 32667519 T C RP11-135A24.2 3'Flank 0.38 TCGA-DD-A116-01 10 45799377 45799377 G T OR13A1 Missense_Mutation p.A165D 0.59 tolerated(0.08) benign(0.285) TCGA-DD-A116-01 10 50122143 50122143 T C LRRC18 Missense_Mutation p.N20D 0.39 deleterious(0.04) possibly_damaging(0.802) TCGA-DD-A116-01 11 11927068 11927068 T C USP47 Silent p.Y246Y 0.38 TCGA-DD-A116-01 11 59282556 59282556 G A OR4D9 Silent p.T57T 0.04 TCGA-DD-A116-01 11 63585307 63585307 G C C11orf84 Missense_Mutation p.R53T 0.27 deleterious(0.01) possibly_damaging(0.675) TCGA-DD-A116-01 11 64564456 64564456 G T MAP4K2 Missense_Mutation p.H469N 0.44 tolerated(0.09) benign(0.075) TCGA-DD-A116-01 11 65320914 65320914 T G LTBP3 Missense_Mutation p.K318Q 0.41 tolerated(0.24) probably_damaging(0.999) TCGA-DD-A116-01 11 65479708 65479708 G - KAT5 5'UTR 0.31 TCGA-DD-A116-01 11 66039979 66039979 C T RAB1B Intron 0.32 TCGA-DD-A116-01 11 67399113 67399113 G A TBX10 Missense_Mutation p.T374I 0.40 deleterious_low_confidence(0) benign(0.03) TCGA-DD-A116-01 11 71726209 71726220 AGCCTGATGGGC CG NUMA1 Frame_Shift_Del p.A777Rfs*31 0.38 TCGA-DD-A116-01 11 85436897 85436897 A G SYTL2 Silent p.N201N 0.35 TCGA-DD-A116-01 11 86055960 86055960 A C C11orf73 Intron 0.44 TCGA-DD-A116-01 11 94918494 94918494 T C SESN3 Missense_Mutation p.N230D 0.36 tolerated(0.38) probably_damaging(0.913) TCGA-DD-A116-01 12 109939174 109939174 A G UBE3B Splice_Site p.X373_splice 0.08 TCGA-DD-A116-01 12 110385195 110385195 T C GIT2 Missense_Mutation p.R503G 0.35 tolerated(0.31) possibly_damaging(0.881) TCGA-DD-A116-01 12 111162541 111162541 C T PPP1CC Nonsense_Mutation p.W149* 0.11 TCGA-DD-A116-01 12 117696926 117696926 T C NOS1 Missense_Mutation p.M793V 0.37 deleterious(0) benign(0.2) TCGA-DD-A116-01 12 1517402 1517402 T A ERC1 Missense_Mutation p.S1005T 0.29 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-DD-A116-01 12 40499574 40499574 G C SLC2A13 Missense_Mutation p.L13V 0.43 deleterious_low_confidence(0) benign(0.132) TCGA-DD-A116-01 12 52307800 52307800 C T ACVRL1 Missense_Mutation p.L190F 0.45 deleterious(0.01) probably_damaging(1) TCGA-DD-A116-01 12 52826871 52826871 C A KRT75 Nonsense_Mutation p.E222* 0.45 TCGA-DD-A116-01 12 6807228 6807228 G A PIANP 5'UTR 0.44 TCGA-DD-A116-01 12 7177505 7177505 G A C1S Silent p.V539V 0.37 TCGA-DD-A116-01 12 80083895 80083895 C A PAWR Missense_Mutation p.G44W 0.38 deleterious(0.01) probably_damaging(0.991) TCGA-DD-A116-01 13 39265478 39265478 G C FREM2 Missense_Mutation p.D1333H 0.58 deleterious(0) probably_damaging(0.999) TCGA-DD-A116-01 14 106203979 106203979 A C IGHG1 3'UTR 0.36 TCGA-DD-A116-01 14 20779825 20779826 - A CCNB1IP1 Frame_Shift_Ins p.A240Cfs*8 0.23 TCGA-DD-A116-01 14 20872028 20872028 C A TEP1 Missense_Mutation p.D350Y 0.50 tolerated(0.1) possibly_damaging(0.571) TCGA-DD-A116-01 14 23512934 23512934 G A PSMB11 3'UTR 0.42 TCGA-DD-A116-01 14 23866803 23866803 T A MYH6 Missense_Mutation p.K637N 0.24 deleterious(0.01) possibly_damaging(0.801) TCGA-DD-A116-01 14 23883217 23883217 G A MYH7 Missense_Mutation p.A1885V 0.43 tolerated(0.06) benign(0.178) TCGA-DD-A116-01 14 60921835 60921835 C G C14orf39 Missense_Mutation p.V463L 0.35 tolerated(0.15) possibly_damaging(0.621) TCGA-DD-A116-01 14 78353552 78353552 A G ADCK1 Missense_Mutation p.K181R 0.41 tolerated(0.37) benign(0.039) TCGA-DD-A116-01 15 35084616 35084616 G A ACTC1 Silent p.V203V 0.35 TCGA-DD-A116-01 15 40757537 40757537 T A BAHD1 Missense_Mutation p.L686M 0.36 tolerated(0.14) probably_damaging(0.989) TCGA-DD-A116-01 15 52251010 52251010 G T LEO1 Missense_Mutation p.Q392K 0.35 tolerated(0.18) benign(0.142) TCGA-DD-A116-01 15 56387675 56387675 A C RFX7 Missense_Mutation p.S751A 0.44 tolerated_low_confidence(1) benign(0.006) TCGA-DD-A116-01 16 3651153 3651153 C A SLX4 Silent p.V330V 0.36 TCGA-DD-A116-01 16 75637056 75637056 T C ADAT1 Missense_Mutation p.K435E 0.52 deleterious(0) probably_damaging(0.929) TCGA-DD-A116-01 17 12016635 12016636 TA - MAP2K4 Frame_Shift_Del p.I258Cfs*9 0.45 TCGA-DD-A116-01 17 15406424 15406424 C A TVP23C Missense_Mutation p.R195S 0.64 tolerated(0.17) benign(0.008) TCGA-DD-A116-01 17 26694414 26694414 G C VTN Silent p.G471G 0.36 TCGA-DD-A116-01 17 26851109 26851109 G T FOXN1 Missense_Mutation p.S41I 0.44 deleterious_low_confidence(0.01) benign(0.221) TCGA-DD-A116-01 17 34417435 34417435 G A CCL3 5'UTR 0.35 TCGA-DD-A116-01 17 45906024 45906024 G A MRPL10 Missense_Mutation p.T32I 0.36 tolerated(0.49) benign(0.015) TCGA-DD-A116-01 17 74383503 74383503 C G SPHK1 Missense_Mutation p.P417A 0.31 deleterious(0.02) probably_damaging(0.953) TCGA-DD-A116-01 17 76802273 76802273 G A USP36 Silent p.P727P 0.45 TCGA-DD-A116-01 17 78073585 78073585 G A CCDC40 3'UTR 0.24 TCGA-DD-A116-01 17 79090524 79090524 T A BAIAP2 3'UTR 0.13 TCGA-DD-A116-01 17 7951723 7951723 C T ALOX15B Missense_Mutation p.P624L 0.55 deleterious(0.01) probably_damaging(1) TCGA-DD-A116-01 18 21125036 21125036 T C NPC1 Missense_Mutation p.E612G 0.35 deleterious(0) possibly_damaging(0.883) TCGA-DD-A116-01 18 40850324 40850324 G A SYT4 Silent p.H420H 0.06 TCGA-DD-A116-01 18 5433469 5433469 T A EPB41L3 Missense_Mutation p.K304M 0.32 deleterious(0) possibly_damaging(0.813) TCGA-DD-A116-01 18 63430104 63430104 G T CDH7 Missense_Mutation p.C9F 0.33 tolerated(0.06) benign(0.125) TCGA-DD-A116-01 18 73122634 73122634 C G SMIM21 3'UTR 0.33 TCGA-DD-A116-01 18 9256402 9256402 A T ANKRD12 Missense_Mutation p.K1046I 0.26 deleterious(0) probably_damaging(0.91) TCGA-DD-A116-01 19 31038933 31038933 C T ZNF536 Missense_Mutation p.R803W 0.40 deleterious(0) probably_damaging(0.997) TCGA-DD-A116-01 19 3527733 3527733 T G FZR1 Missense_Mutation p.L192R 0.28 deleterious(0) probably_damaging(0.992) TCGA-DD-A116-01 19 37309866 37309869 AAGA - ZNF790 Frame_Shift_Del p.L460Mfs*192 0.28 TCGA-DD-A116-01 19 39899366 39899366 T A ZFP36 3'UTR 0.45 TCGA-DD-A116-01 19 40424311 40424311 G C FCGBP Missense_Mutation p.P631R 0.40 possibly_damaging(0.889) TCGA-DD-A116-01 19 43983597 43983597 C A PHLDB3 Missense_Mutation p.R545L 0.41 deleterious(0) probably_damaging(1) TCGA-DD-A116-01 19 46518655 46518655 T C CCDC61 Missense_Mutation p.L272P 0.21 deleterious(0) probably_damaging(0.956) TCGA-DD-A116-01 19 4658077 4658077 T A C19orf10 Silent p.A154A 0.29 TCGA-DD-A116-01 19 55148212 55148212 G A LILRB1 Silent p.V614V 0.29 TCGA-DD-A116-01 19 58067425 58067425 T A ZNF550 Intron 0.73 TCGA-DD-A116-01 19 8429254 8429254 A G ANGPTL4 Missense_Mutation p.T17A 0.50 tolerated(0.05) benign(0.217) TCGA-DD-A116-01 19 8576572 8576572 C A ZNF414 Missense_Mutation p.R268L 0.55 deleterious(0) probably_damaging(0.999) TCGA-DD-A116-01 19 9002558 9002558 G T MUC16 Missense_Mutation p.H13420N 0.32 probably_damaging(0.922) TCGA-DD-A116-01 19 9087113 9087113 T C MUC16 Missense_Mutation p.T1568A 0.38 unknown(0) TCGA-DD-A116-01 1 109795619 109795619 T C CELSR2 Missense_Mutation p.I973T 0.45 tolerated(0.24) probably_damaging(0.926) TCGA-DD-A116-01 1 1500143 1500143 G T SSU72 Intron 0.59 TCGA-DD-A116-01 1 151260007 151260007 C T ZNF687 Silent p.L414L 0.42 TCGA-DD-A116-01 1 151499552 151499552 G T CGN Missense_Mutation p.G622V 0.35 tolerated(0.3) benign(0.006) TCGA-DD-A116-01 1 155003099 155003099 C A DCST2 Silent p.R276R 0.36 TCGA-DD-A116-01 1 156220788 156220788 C A SMG5 Splice_Site p.X943_splice 0.53 TCGA-DD-A116-01 1 158069169 158069169 C T KIRREL 3'Flank 0.33 TCGA-DD-A116-01 1 171251160 171251160 C T FMO1 Missense_Mutation p.R291C 0.23 tolerated(0.47) benign(0.015) TCGA-DD-A116-01 1 181548355 181548355 A T CACNA1E Missense_Mutation p.N255I 0.35 tolerated(0.14) benign(0.018) TCGA-DD-A116-01 1 207110487 207110487 A G PIGR Missense_Mutation p.L333P 0.24 tolerated(0.37) benign(0.002) TCGA-DD-A116-01 1 212184718 212184718 T C INTS7 Silent p.Q185Q 0.07 TCGA-DD-A116-01 1 220356254 220356254 C G RAB3GAP2 Missense_Mutation p.R673T 0.31 tolerated(0.54) benign(0.316) TCGA-DD-A116-01 1 36291032 36291032 A G AGO4 Missense_Mutation p.N142S 0.55 tolerated(0.79) benign(0.002) TCGA-DD-A116-01 1 86817802 86817802 C T ODF2L 3'UTR 0.34 TCGA-DD-A116-01 20 23584043 23584043 A T CST9 3'UTR 0.30 TCGA-DD-A116-01 20 4163387 4163387 G T SMOX Missense_Mutation p.G421C 0.41 deleterious(0.01) probably_damaging(0.921) TCGA-DD-A116-01 20 50769740 50769740 G A ZFP64 Missense_Mutation p.R331W 0.42 deleterious(0.04) benign(0.055) TCGA-DD-A116-01 21 11039051 11039051 A G BAGE2 RNA 0.07 TCGA-DD-A116-01 21 31744410 31744410 C A KRTAP13-2 Missense_Mutation p.C41F 0.34 tolerated(0.1) possibly_damaging(0.493) TCGA-DD-A116-01 21 34401356 34401356 T A OLIG2 3'UTR 0.41 TCGA-DD-A116-01 21 45094517 45094517 C A RRP1B Missense_Mutation p.L120M 0.33 deleterious(0) probably_damaging(1) TCGA-DD-A116-01 21 45196138 45196138 C - CSTB Frame_Shift_Del p.A5Rfs*19 0.27 TCGA-DD-A116-01 21 45877870 45877870 A C LRRC3 3'UTR 0.38 TCGA-DD-A116-01 22 19376069 19376069 A G HIRA Silent p.C315C 0.39 TCGA-DD-A116-01 22 22735705 22735705 C T IGLV1-44 Silent p.S114S 0.40 TCGA-DD-A116-01 22 33402666 33402666 A G SYN3 5'UTR 0.40 TCGA-DD-A116-01 22 35661228 35661228 G A HMGXB4 Missense_Mutation p.D283N 0.33 deleterious_low_confidence(0) benign(0.253) TCGA-DD-A116-01 22 42557327 42557327 C T TCF20 3'UTR 0.30 TCGA-DD-A116-01 22 42972029 42972029 G A SERHL2 3'Flank 0.32 TCGA-DD-A116-01 2 127821169 127821169 T - BIN1 Frame_Shift_Del p.N251Tfs*6 0.30 TCGA-DD-A116-01 2 158637001 158637001 T C ACVR1 Missense_Mutation p.N60S 0.38 tolerated(0.72) benign(0.012) TCGA-DD-A116-01 2 197084796 197084796 T C HECW2 Missense_Mutation p.S1459G 0.30 tolerated(0.26) benign(0.012) TCGA-DD-A116-01 3 130286897 130286897 A G COL6A6 Missense_Mutation p.K617R 0.36 tolerated(0.15) benign(0.01) TCGA-DD-A116-01 3 15115343 15115343 C A ZFYVE20 Missense_Mutation p.E767D 0.39 deleterious_low_confidence(0.02) benign(0.17) TCGA-DD-A116-01 3 184049265 184049265 G A EIF4G1 Silent p.V1429V 0.43 TCGA-DD-A116-01 3 195935366 195935366 C T ZDHHC19 Missense_Mutation p.M158I 0.34 deleterious(0.03) benign(0.14) TCGA-DD-A116-01 3 197238766 197238766 T G BDH1 Nonstop_Mutation p.*344Cext*26 0.33 TCGA-DD-A116-01 3 41266100 41266100 T C CTNNB1 Missense_Mutation p.S33P 0.32 deleterious(0.01) benign(0.423) TCGA-DD-A116-01 3 52588770 52588770 C A PBRM1 Missense_Mutation p.V1420L 0.38 tolerated(0.21) benign(0.009) TCGA-DD-A116-01 4 118006517 118006517 G A TRAM1L1 Silent p.P11P 0.71 TCGA-DD-A116-01 4 122250816 122250816 C T QRFPR Missense_Mutation p.V317M 0.59 deleterious(0) possibly_damaging(0.903) TCGA-DD-A116-01 4 123301311 123301311 G A ADAD1 Silent p.A29A 0.67 TCGA-DD-A116-01 4 36216083 36216083 T A ARAP2 Missense_Mutation p.N309Y 0.71 deleterious(0.01) benign(0.013) TCGA-DD-A116-01 5 13770967 13770967 T C DNAH5 Missense_Mutation p.R3166G 0.29 benign(0.415) TCGA-DD-A116-01 5 141033643 141033643 C A ARAP3 Silent p.L1503L 0.41 TCGA-DD-A116-01 5 154396242 154396242 C G KIF4B Missense_Mutation p.S941R 0.18 tolerated(0.29) benign(0.001) TCGA-DD-A116-01 5 159776748 159776748 T C C1QTNF2 Silent p.P140P 0.22 TCGA-DD-A116-01 5 167891765 167891765 G A WWC1 Missense_Mutation p.R989H 0.28 tolerated(0.16) benign(0.031) TCGA-DD-A116-01 5 169141427 169141427 A T DOCK2 Missense_Mutation p.K636M 0.27 deleterious(0.01) possibly_damaging(0.804) TCGA-DD-A116-01 5 180047636 180047636 G C FLT4 Silent p.L793L 0.38 TCGA-DD-A116-01 5 32791740 32791740 G A NPR3 3'UTR 0.25 TCGA-DD-A116-01 5 34005875 34005875 T C AMACR Missense_Mutation p.Y126C 0.24 deleterious(0) probably_damaging(0.996) TCGA-DD-A116-01 5 474998 474998 A T SLC9A3 Missense_Mutation p.M834K 0.27 deleterious_low_confidence(0) possibly_damaging(0.624) TCGA-DD-A116-01 5 60217888 60217888 T C ERCC8 Missense_Mutation p.I90V 0.38 tolerated(1) benign(0) TCGA-DD-A116-01 5 72144245 72144245 G T TNPO1 Nonsense_Mutation p.E17* 0.20 TCGA-DD-A116-01 6 21594807 21594807 G A SOX4 Silent p.L14L 0.62 TCGA-DD-A116-01 6 31830507 31830507 C A NEU1 Missense_Mutation p.G16V 0.31 tolerated_low_confidence(0.12) benign(0.011) TCGA-DD-A116-01 6 46976681 46976681 C G GPR110 Missense_Mutation p.Q830H 0.38 deleterious(0) probably_damaging(0.962) TCGA-DD-A116-01 6 7585392 7585392 A G DSP Missense_Mutation p.I2633V 0.30 benign(0.001) TCGA-DD-A116-01 6 88128113 88128113 G T C6ORF165 Missense_Mutation p.E273D 0.39 deleterious(0.01) possibly_damaging(0.596) TCGA-DD-A116-01 6 91226090 91226090 G C MAP3K7 3'UTR 0.59 TCGA-DD-A116-01 7 123517143 123517143 T A HYAL4 Silent p.P460P 0.37 TCGA-DD-A116-01 7 135123156 135123156 G T CNOT4 5'UTR 0.23 TCGA-DD-A116-01 7 45002481 45002481 G T MYO1G Missense_Mutation p.L972M 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-DD-A116-01 7 71177213 71177213 G A WBSCR17 3'UTR 0.38 TCGA-DD-A116-01 7 83037733 83037733 C T SEMA3E Silent p.G207G 0.34 TCGA-DD-A116-01 7 89854615 89854615 G A STEAP2 Silent p.V73V 0.32 TCGA-DD-A116-01 7 99668442 99668442 G A ZNF3 3'UTR 0.31 TCGA-DD-A116-01 8 113988234 113988234 C T CSMD3 Missense_Mutation p.E392K 0.21 tolerated(0.61) benign(0.001) TCGA-DD-A116-01 8 124267557 124267557 T C ZHX1 Silent p.K210K 0.21 TCGA-DD-A116-01 8 142231707 142231707 G A SLC45A4 Silent p.G82G 0.25 TCGA-DD-A116-01 8 143746028 143746028 T C JRK RNA 0.11 TCGA-DD-A116-01 8 144945358 144945358 G T EPPK1 Silent p.V688V 0.19 TCGA-DD-A116-01 8 145641758 145641758 C T SLC39A4 Intron 0.90 TCGA-DD-A116-01 8 43033222 43033222 T A HGSNAT Missense_Mutation p.V286E 0.58 deleterious(0) probably_damaging(0.953) TCGA-DD-A116-01 8 6296583 6296583 G A MCPH1 Silent p.E182E 0.28 TCGA-DD-A116-01 8 64098980 64098980 G A YTHDF3 Silent p.G136G 0.23 TCGA-DD-A116-01 8 68939468 68939468 G T PREX2 Silent p.L151L 0.23 TCGA-DD-A116-01 8 72966074 72966074 G C TRPA1 Missense_Mutation p.H520D 0.16 deleterious(0.01) benign(0.446) TCGA-DD-A116-01 8 77767241 77767241 G T ZFHX4 Missense_Mutation p.R2695L 0.20 probably_damaging(0.986) TCGA-DD-A116-01 9 100849623 100849623 G A TRIM14 3'UTR 0.66 TCGA-DD-A116-01 9 134497245 134497245 C T RAPGEF1 Missense_Mutation p.G616R 0.59 tolerated(0.07) benign(0.323) TCGA-DD-A116-01 9 140901281 140901281 C G CACNA1B Silent p.V679V 0.67 TCGA-DD-A116-01 9 34623647 34623647 G T ARID3C Missense_Mutation p.Q214K 0.57 deleterious(0.04) benign(0.078) TCGA-DD-A116-01 9 77400791 77400791 A G TRPM6 Missense_Mutation p.M973T 0.59 deleterious(0) benign(0.392) TCGA-DD-A116-01 9 84564460 84564460 C G RP11-383M4.6 Intron 0.40 TCGA-DD-A116-01 9 90535228 90535228 G A SPATA31C1 RNA 0.58 TCGA-DD-A116-01 X 103041518 103041518 A G PLP1 Missense_Mutation p.T106A 0.76 tolerated(0.23) benign(0.017) TCGA-DD-A116-01 X 114424168 114424168 C A RBMXL3 Missense_Mutation p.T55N 0.89 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DD-A116-01 X 24549826 24549826 A C PDK3 Missense_Mutation p.Q339P 0.05 deleterious(0.01) possibly_damaging(0.818) TCGA-DD-A116-01 X 89177754 89177754 G A TGIF2LX Missense_Mutation p.A224T 0.79 deleterious(0) probably_damaging(0.977) TCGA-DD-A116-01 X 9863964 9863964 G T SHROOM2 Missense_Mutation p.Q672H 0.63 deleterious(0.03) benign(0.106) TCGA-DD-A118-01 10 103347982 103347982 A G DPCD 5'Flank 0.20 TCGA-DD-A118-01 10 124329720 124329720 C T DMBT1 Missense_Mutation p.A45V 0.22 tolerated_low_confidence(0.1) benign(0.005) TCGA-DD-A118-01 10 92638835 92638835 A G RPP30 Missense_Mutation p.R96G 0.26 tolerated(0.43) benign(0.017) TCGA-DD-A118-01 11 108218075 108218075 T A ATM Missense_Mutation p.L2885H 0.48 deleterious(0) probably_damaging(0.999) TCGA-DD-A118-01 11 126139257 126139257 G T FOXRED1 Intron 0.49 TCGA-DD-A118-01 11 22398984 22398984 G A SLC17A6 Missense_Mutation p.A483T 0.19 deleterious(0) benign(0.235) TCGA-DD-A118-01 11 44089261 44089262 - G ACCS Frame_Shift_Ins p.E30Gfs*23 0.16 TCGA-DD-A118-01 11 4567048 4567048 T C OR52M1 Silent p.L210L 0.22 TCGA-DD-A118-01 11 4945133 4945133 A G OR51G1 Missense_Mutation p.M146T 0.18 deleterious(0.02) benign(0.026) TCGA-DD-A118-01 11 57466174 57466174 C T ZDHHC5 Silent p.S422S 0.16 TCGA-DD-A118-01 11 62159808 62159808 C T ASRGL1 3'UTR 0.57 TCGA-DD-A118-01 11 76371941 76371941 G T LRRC32 Silent p.A232A 0.27 TCGA-DD-A118-01 11 764979 764979 A G TALDO1 3'UTR 0.21 TCGA-DD-A118-01 12 10541374 10541374 G A KLRK1 Silent p.S12S 0.16 TCGA-DD-A118-01 12 113344971 113344971 G T OAS1 Nonsense_Mutation p.E43* 0.31 TCGA-DD-A118-01 12 130830386 130830386 A G PIWIL1 Silent p.T93T 0.18 TCGA-DD-A118-01 12 133240672 133240672 T G POLE Missense_Mutation p.N875T 0.28 tolerated(0.08) probably_damaging(0.934) TCGA-DD-A118-01 12 2788717 2788717 G A CACNA1C Silent p.A1781A 0.23 TCGA-DD-A118-01 12 51773444 51773444 G A GALNT6 Missense_Mutation p.P41L 0.25 deleterious_low_confidence(0) benign(0.063) TCGA-DD-A118-01 12 56487230 56487230 A G ERBB3 Missense_Mutation p.N459S 0.27 deleterious(0) probably_damaging(0.999) TCGA-DD-A118-01 12 58350690 58350690 A C XRCC6BP1 3'UTR 0.23 TCGA-DD-A118-01 12 70747737 70747737 G T CNOT2 3'UTR 0.16 TCGA-DD-A118-01 12 7169973 7169973 A C C1S Missense_Mutation p.Y67S 0.23 deleterious(0) probably_damaging(0.977) TCGA-DD-A118-01 12 7556293 7556293 C T CD163L1 Missense_Mutation p.V416I 0.06 tolerated(1) benign(0.044) TCGA-DD-A118-01 12 77203532 77203532 T C ZDHHC17 Silent p.Y146Y 0.27 TCGA-DD-A118-01 12 89743032 89743032 C A DUSP6 Nonstop_Mutation p.*382Lext*36 0.25 TCGA-DD-A118-01 13 52605289 52605289 T C UTP14C 3'UTR 0.12 TCGA-DD-A118-01 14 24646590 24646590 G T REC8 Splice_Site p.X245_splice 0.23 TCGA-DD-A118-01 14 24845640 24845640 G A NFATC4 Missense_Mutation p.E796K 0.20 tolerated_low_confidence(0.31) possibly_damaging(0.801) TCGA-DD-A118-01 14 55618447 55618447 G T DLGAP5 Silent p.I778I 0.32 TCGA-DD-A118-01 14 60945061 60945061 G C C14orf39 Missense_Mutation p.Q94E 0.25 tolerated(0.09) benign(0.388) TCGA-DD-A118-01 15 59972472 59972472 A G BNIP2 Missense_Mutation p.I150T 0.59 tolerated(0.46) benign(0.013) TCGA-DD-A118-01 15 77407621 77407621 T C PEAK1 Missense_Mutation p.H1373R 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-DD-A118-01 15 85660890 85660890 T A PDE8A Silent p.G518G 0.23 TCGA-DD-A118-01 16 15814851 15814851 T C MYH11 Missense_Mutation p.T1553A 0.16 possibly_damaging(0.822) TCGA-DD-A118-01 16 33647307 33647307 G T RP11-812E19.9 Missense_Mutation p.P98Q 0.23 deleterious_low_confidence(0) benign(0.003) TCGA-DD-A118-01 16 57734093 57734093 C A CCDC135 Missense_Mutation p.P139T 0.16 deleterious(0.05) possibly_damaging(0.89) TCGA-DD-A118-01 16 58079051 58079051 G A MMP15 Missense_Mutation p.D571N 0.48 deleterious(0.03) probably_damaging(0.978) TCGA-DD-A118-01 16 77896666 77896666 T A VAT1L Missense_Mutation p.C201S 0.28 deleterious(0.03) benign(0.039) TCGA-DD-A118-01 16 84228671 84228671 G T ADAD2 Intron 0.18 TCGA-DD-A118-01 17 12626295 12626295 G T MYOCD Missense_Mutation p.V129L 0.37 tolerated(0.17) benign(0.007) TCGA-DD-A118-01 17 19261177 19261177 A T B9D1 Missense_Mutation p.F74I 0.40 deleterious(0) probably_damaging(0.976) TCGA-DD-A118-01 17 26088234 26088234 C T NOS2 Missense_Mutation p.G942S 0.29 deleterious(0) probably_damaging(0.974) TCGA-DD-A118-01 17 28772898 28772898 G T CPD Silent p.A911A 0.32 TCGA-DD-A118-01 17 43367973 43367973 T C MAP3K14 RNA 0.19 TCGA-DD-A118-01 17 46128958 46128959 - C NFE2L1 Frame_Shift_Ins p.V163Sfs*14 0.30 TCGA-DD-A118-01 17 47866083 47866083 A G KAT7 5'UTR 0.21 TCGA-DD-A118-01 17 61995228 61995228 C T GH1 Silent p.V116V 0.37 TCGA-DD-A118-01 17 72368126 72368126 C T GPR142 Missense_Mutation p.A259V 0.22 deleterious(0.05) probably_damaging(0.967) TCGA-DD-A118-01 18 34261446 34261446 A - FHOD3 Frame_Shift_Del p.E453Gfs*21 0.41 TCGA-DD-A118-01 19 1109390 1109390 C T SBNO2 Silent p.A1083A 0.52 TCGA-DD-A118-01 19 12987092 12987092 A C DNASE2 Silent p.S265S 0.15 TCGA-DD-A118-01 19 12991796 12991796 T C DNASE2 Missense_Mutation p.N86S 0.22 deleterious(0.03) possibly_damaging(0.513) TCGA-DD-A118-01 19 22155549 22155549 T C ZNF208 Missense_Mutation p.T763A 0.38 tolerated(0.86) benign(0) TCGA-DD-A118-01 19 22156821 22156821 T C ZNF208 Missense_Mutation p.K339E 0.20 deleterious(0) probably_damaging(0.968) TCGA-DD-A118-01 19 3162793 3162793 C T GNA15 Missense_Mutation p.P301S 0.27 tolerated(0.09) possibly_damaging(0.651) TCGA-DD-A118-01 19 38102620 38102620 A G ZNF540 Missense_Mutation p.K147E 0.40 tolerated(1) benign(0) TCGA-DD-A118-01 19 45206800 45206800 C A CEACAM16 Silent p.G73G 0.15 TCGA-DD-A118-01 19 46319169 46319169 G A SYMPK Silent p.D1209D 0.16 TCGA-DD-A118-01 19 52196399 52196399 T C SPACA6P-AS RNA 0.50 TCGA-DD-A118-01 19 7516109 7516109 C T ARHGEF18 Silent p.T416T 0.19 TCGA-DD-A118-01 19 9087246 9087246 G T MUC16 Silent p.I1523I 0.18 TCGA-DD-A118-01 1 149881036 149881036 G A SV2A Missense_Mutation p.R423W 0.13 deleterious(0) probably_damaging(0.979) TCGA-DD-A118-01 1 152281525 152281525 G A FLG Missense_Mutation p.A1946V 0.20 possibly_damaging(0.483) TCGA-DD-A118-01 1 158151319 158151319 G A CD1D Missense_Mutation p.G46S 0.18 tolerated(0.13) possibly_damaging(0.471) TCGA-DD-A118-01 1 158549059 158549059 T C OR10X1 Missense_Mutation p.T211A 0.16 tolerated(0.34) possibly_damaging(0.641) TCGA-DD-A118-01 1 159912756 159912756 C A IGSF9 Missense_Mutation p.V82L 0.20 tolerated(0.27) benign(0.004) TCGA-DD-A118-01 1 206566223 206566223 A C SRGAP2 Silent p.R136R 0.03 TCGA-DD-A118-01 1 216073535 216073535 C T USH2A Silent p.S2492S 0.23 TCGA-DD-A118-01 1 220091886 220091886 G T SLC30A10 Intron 0.52 TCGA-DD-A118-01 1 222802656 222802656 G - MIA3 Frame_Shift_Del p.G699Afs*4 0.15 TCGA-DD-A118-01 1 223567608 223567608 T C C1orf65 Missense_Mutation p.L264P 0.14 deleterious(0) probably_damaging(0.999) TCGA-DD-A118-01 1 223567609 223567609 G T C1orf65 Silent p.L264L 0.15 TCGA-DD-A118-01 1 225609820 225609820 C A LBR Missense_Mutation p.A109S 0.21 tolerated(0.73) benign(0.002) TCGA-DD-A118-01 1 228553142 228553142 A G OBSCN Missense_Mutation p.E7272G 0.20 benign(0.121) TCGA-DD-A118-01 1 240656266 240656266 C A GREM2 3'UTR 0.11 TCGA-DD-A118-01 1 33236078 33236078 C T KIAA1522 Missense_Mutation p.S433F 0.17 deleterious(0) unknown(0) TCGA-DD-A118-01 1 36757042 36757042 C T THRAP3 Nonsense_Mutation p.Q605* 0.32 TCGA-DD-A118-01 1 46083194 46083194 G A NASP Silent p.P739P 0.31 TCGA-DD-A118-01 1 49242456 49242456 C T BEND5 Silent p.L16L 0.33 TCGA-DD-A118-01 1 6661869 6661869 T A KLHL21 Missense_Mutation p.I337F 0.32 deleterious(0) possibly_damaging(0.875) TCGA-DD-A118-01 1 7724363 7724363 T G CAMTA1 Missense_Mutation p.F586V 0.34 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-DD-A118-01 20 34286442 34286442 C T NFS1 Silent p.L56L 0.16 TCGA-DD-A118-01 20 57484420 57484420 C T GNAS Missense_Mutation p.R844C 0.16 deleterious(0.01) probably_damaging(1) TCGA-DD-A118-01 20 58564047 58564047 T A CDH26 Missense_Mutation p.L371H 0.18 tolerated(0.08) probably_damaging(0.957) TCGA-DD-A118-01 21 27078305 27078305 A G JAM2 Missense_Mutation p.S238G 0.22 tolerated(0.11) benign(0.017) TCGA-DD-A118-01 22 18604433 18604433 G A TUBA8 Missense_Mutation p.R64Q 0.40 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-DD-A118-01 22 21133628 21133628 A G SERPIND1 Missense_Mutation p.I10V 0.15 tolerated_low_confidence(0.94) benign(0) TCGA-DD-A118-01 22 26695027 26695027 G A SEZ6L Missense_Mutation p.V414M 0.18 tolerated(0.11) benign(0.098) TCGA-DD-A118-01 22 30415674 30415674 G A MTMR3 Missense_Mutation p.A676T 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-DD-A118-01 22 33670547 33670547 C T LARGE Missense_Mutation p.D713N 0.22 deleterious(0) probably_damaging(1) TCGA-DD-A118-01 2 101666978 101666978 C G TBC1D8 Missense_Mutation p.D238H 0.38 deleterious(0.01) possibly_damaging(0.467) TCGA-DD-A118-01 2 101666979 101666979 C A TBC1D8 Silent p.L237L 0.38 TCGA-DD-A118-01 2 10188154 10188154 C T KLF11 Silent p.S230S 0.31 TCGA-DD-A118-01 2 112942913 112942913 C A FBLN7 Missense_Mutation p.P315Q 0.16 deleterious(0.03) probably_damaging(0.918) TCGA-DD-A118-01 2 141598619 141598619 C T LRP1B Missense_Mutation p.R1661H 0.26 possibly_damaging(0.522) TCGA-DD-A118-01 2 179440745 179440745 G C TTN Missense_Mutation p.P23372A 0.22 TCGA-DD-A118-01 2 216248174 216248174 C T FN1 Missense_Mutation p.D1643N 0.18 deleterious(0.04) benign(0.128) TCGA-DD-A118-01 2 40656071 40656071 T A SLC8A1 Silent p.T450T 0.15 TCGA-DD-A118-01 2 86408465 86408465 G C IMMT Missense_Mutation p.P26A 0.20 deleterious_low_confidence(0.04) benign(0.287) TCGA-DD-A118-01 2 98744813 98744813 G T VWA3B Missense_Mutation p.A272S 0.20 deleterious(0.04) probably_damaging(0.934) TCGA-DD-A118-01 3 107799113 107799113 A C CD47 Missense_Mutation p.F42C 0.24 tolerated(0.1) possibly_damaging(0.778) TCGA-DD-A118-01 3 126445955 126445955 C T CHCHD6 Missense_Mutation p.P41L 0.24 tolerated(0.45) possibly_damaging(0.54) TCGA-DD-A118-01 3 49688366 49688366 A G BSN Missense_Mutation p.T614A 0.31 unknown(0) TCGA-DD-A118-01 3 52440295 52440295 G A BAP1 Nonsense_Mutation p.Q253* 0.58 TCGA-DD-A118-01 3 52835121 52835121 C T ITIH3 Missense_Mutation p.R448W 0.41 deleterious(0.02) probably_damaging(1) TCGA-DD-A118-01 4 164271533 164271533 T G NPY5R Missense_Mutation p.S36R 0.24 tolerated(0.13) benign(0.061) TCGA-DD-A118-01 4 186321372 186321372 G T ANKRD37 3'UTR 0.62 TCGA-DD-A118-01 4 25351159 25351159 G T ZCCHC4 Nonsense_Mutation p.E269* 0.13 TCGA-DD-A118-01 4 56475318 56475318 A C NMU Missense_Mutation p.F83C 0.17 deleterious(0.01) possibly_damaging(0.527) TCGA-DD-A118-01 4 71508293 71508293 C G ENAM Missense_Mutation p.P384A 0.16 tolerated(0.42) benign(0.003) TCGA-DD-A118-01 4 75174267 75174267 C T EPGN Missense_Mutation p.P6L 0.14 tolerated(0.39) benign(0.024) TCGA-DD-A118-01 5 140216086 140216086 G T PCDHA7 Silent p.A706A 0.56 TCGA-DD-A118-01 5 140222188 140222188 C T PCDHA8 Missense_Mutation p.R428W 0.17 deleterious_low_confidence(0.04) benign(0.06) TCGA-DD-A118-01 5 149769583 149769583 T C TCOF1 Silent p.T1060T 0.61 TCGA-DD-A118-01 5 150932949 150932949 C G FAT2 Splice_Site p.X1316_splice 0.17 TCGA-DD-A118-01 5 22078853 22078853 G T CDH12 5'UTR 0.18 TCGA-DD-A118-01 5 55272094 55272094 G A IL6ST Nonsense_Mutation p.Q5* 0.26 TCGA-DD-A118-01 5 78376532 78376532 C T BHMT2 Missense_Mutation p.A94V 0.08 deleterious(0.02) possibly_damaging(0.75) TCGA-DD-A118-01 6 151670985 151670985 A T AKAP12 Nonsense_Mutation p.K487* 0.56 TCGA-DD-A118-01 6 26027241 26027241 C A HIST1H4B Missense_Mutation p.K80N 0.14 deleterious(0.01) benign(0.329) TCGA-DD-A118-01 6 26204899 26204899 G C HIST1H4E Missense_Mutation p.K9N 0.22 tolerated_low_confidence(0.08) benign(0.067) TCGA-DD-A118-01 6 32181471 32181471 C A NOTCH4 Missense_Mutation p.V772L 0.18 tolerated(0.07) benign(0.217) TCGA-DD-A118-01 6 44241031 44241031 A T TMEM151B Missense_Mutation p.M122L 0.18 tolerated(0.16) possibly_damaging(0.811) TCGA-DD-A118-01 6 56417839 56417846 TCAGTGAC - DST Frame_Shift_Del p.K2625Nfs*9 0.10 TCGA-DD-A118-01 6 65303132 65303132 C A EYS Missense_Mutation p.R1252I 0.16 tolerated(0.21) benign(0.002) TCGA-DD-A118-01 6 90371908 90371908 T C MDN1 Silent p.S4821S 0.25 TCGA-DD-A118-01 6 97246895 97246895 C A GPR63 Missense_Mutation p.G238V 0.31 deleterious(0.03) benign(0.206) TCGA-DD-A118-01 7 100034075 100034075 G C PPP1R35 5'UTR 0.20 TCGA-DD-A118-01 7 100771835 100771835 A G SERPINE1 Missense_Mutation p.N54S 0.10 deleterious(0.03) probably_damaging(1) TCGA-DD-A118-01 7 105278897 105278897 C T ATXN7L1 Missense_Mutation p.A369T 0.36 tolerated(0.38) benign(0.002) TCGA-DD-A118-01 7 150883617 150883617 C T ASB10 Missense_Mutation p.R149H 0.17 tolerated(0.11) benign(0.052) TCGA-DD-A118-01 7 152549222 152549222 C G ACTR3B Silent p.L321L 0.26 TCGA-DD-A118-01 7 155556582 155556582 A T RBM33 Missense_Mutation p.Q1019L 0.25 tolerated(0.05) unknown(0) TCGA-DD-A118-01 7 64529085 64529085 A G SNORA22 3'Flank 0.17 TCGA-DD-A118-01 7 69364274 69364274 A C AUTS2 Missense_Mutation p.K104N 0.19 deleterious(0) probably_damaging(0.978) TCGA-DD-A118-01 7 73944105 73944105 C T GTF2IRD1 Missense_Mutation p.R410W 0.22 deleterious(0) probably_damaging(0.996) TCGA-DD-A118-01 7 88964869 88964869 C A ZNF804B Nonsense_Mutation p.S858* 0.13 TCGA-DD-A118-01 8 77765482 77765482 C T ZFHX4 Missense_Mutation p.L2109F 0.25 probably_damaging(0.998) TCGA-DD-A118-01 9 127074912 127074912 C T NEK6 Missense_Mutation p.A106V 0.21 tolerated(0.18) probably_damaging(0.955) TCGA-DD-A118-01 9 99113259 99113259 A G SLC35D2 Intron 0.12 TCGA-DD-A118-01 X 100078295 100078295 G T CSTF2 Missense_Mutation p.A108S 0.16 tolerated(0.15) probably_damaging(0.972) TCGA-DD-A118-01 X 101911927 101911927 C T GPRASP1 Missense_Mutation p.T1029M 0.20 tolerated(0.09) benign(0.018) TCGA-DD-A118-01 X 102005369 102005369 C A BHLHB9 Silent p.I482I 0.41 TCGA-DD-A118-01 X 102842040 102842040 A T TCEAL4 Missense_Mutation p.H146L 0.40 deleterious(0.01) possibly_damaging(0.665) TCGA-DD-A118-01 X 117788710 117788710 C T DOCK11 Missense_Mutation p.T1614I 0.37 deleterious(0) benign(0.015) TCGA-DD-A118-01 X 117895250 117895250 T A IL13RA1 Missense_Mutation p.Y276N 0.19 tolerated(0.62) benign(0) TCGA-DD-A118-01 X 122538727 122538727 A G GRIA3 Missense_Mutation p.K488E 0.19 tolerated(0.17) benign(0.129) TCGA-DD-A118-01 X 134494230 134494230 G A ZNF449 Silent p.L262L 0.15 TCGA-DD-A118-01 X 13727290 13727290 G A RAB9A Missense_Mutation p.C142Y 0.20 deleterious(0) benign(0.242) TCGA-DD-A118-01 X 151806785 151806785 C T GABRQ Silent p.V43V 0.21 TCGA-DD-A118-01 X 152710779 152710779 C T TREX2 Missense_Mutation p.R37H 0.32 deleterious(0.03) probably_damaging(1) TCGA-DD-A118-01 X 153185069 153185069 G T ARHGAP4 Silent p.L251L 0.15 TCGA-DD-A118-01 X 2407376 2407376 G A ZBED1 Missense_Mutation p.T462M 0.22 deleterious(0.04) benign(0.24) TCGA-DD-A118-01 X 27998998 27998998 G A DCAF8L1 Nonsense_Mutation p.R152* 0.04 TCGA-DD-A118-01 X 2835844 2835844 C T ARSD Splice_Site p.X288_splice 0.25 TCGA-DD-A118-01 X 44091923 44091923 C T EFHC2 Missense_Mutation p.G475E 0.41 deleterious(0) probably_damaging(0.998) TCGA-DD-A118-01 X 53279675 53279675 C T IQSEC2 Missense_Mutation p.D695N 0.22 deleterious(0.02) probably_damaging(0.959) TCGA-DD-A118-01 X 5811323 5811323 A G NLGN4X Silent p.T662T 0.37 TCGA-DD-A118-01 X 64957171 64957171 C T MSN Missense_Mutation p.R408W 0.15 deleterious(0.01) benign(0.195) TCGA-DD-A119-01 10 105750545 105750545 A G SLK Missense_Mutation p.H88R 0.28 deleterious(0) probably_damaging(0.951) TCGA-DD-A119-01 11 30900222 30900222 G C DCDC1 Missense_Mutation p.A1754G 0.42 tolerated(0.38) possibly_damaging(0.567) TCGA-DD-A119-01 11 63396832 63396832 C A ATL3 Missense_Mutation p.A529S 0.42 tolerated(0.82) benign(0.004) TCGA-DD-A119-01 11 64338585 64338585 C T SLC22A11 3'UTR 0.09 TCGA-DD-A119-01 11 83173062 83173062 A G DLG2 Missense_Mutation p.F935S 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-DD-A119-01 12 4553334 4553334 C T FGF6 Missense_Mutation p.V139I 0.25 tolerated(0.14) benign(0.004) TCGA-DD-A119-01 12 48723755 48723755 G C H1FNT Silent p.P227P 0.26 TCGA-DD-A119-01 12 51773531 51773531 C A GALNT6 Missense_Mutation p.R12L 0.40 deleterious_low_confidence(0) benign(0.063) TCGA-DD-A119-01 12 57351246 57351246 T C RDH16 Translation_Start_Site p.M1? 0.14 deleterious(0) probably_damaging(0.925) TCGA-DD-A119-01 13 113973926 113973926 C T LAMP1 Silent p.S235S 0.10 TCGA-DD-A119-01 14 106518833 106518833 C A IGHV3-7 Missense_Mutation p.W7C 0.34 tolerated_low_confidence(0.18) benign(0.097) TCGA-DD-A119-01 14 23310816 23310816 A G MMP14 Silent p.Q75Q 0.11 TCGA-DD-A119-01 14 61447877 61447877 G A TRMT5 5'UTR 0.35 TCGA-DD-A119-01 14 91700443 91700443 C T GPR68 Missense_Mutation p.E318K 0.21 tolerated(0.25) benign(0.046) TCGA-DD-A119-01 15 101188803 101188806 TGTT - ASB7 3'UTR 0.33 TCGA-DD-A119-01 15 49935632 49935632 C T DTWD1 Silent p.L258L 0.06 TCGA-DD-A119-01 15 72119321 72119321 C T MYO9A Missense_Mutation p.R2416Q 0.11 tolerated_low_confidence(0.06) benign(0.029) TCGA-DD-A119-01 16 1706365 1706365 G A CRAMP1L Missense_Mutation p.R536Q 0.12 tolerated_low_confidence(0.65) benign(0.004) TCGA-DD-A119-01 16 2147400 2147400 G A PKD1 Missense_Mutation p.A3442V 0.27 benign(0.004) TCGA-DD-A119-01 17 27414105 27414105 T A MYO18A Missense_Mutation p.K1854M 0.40 deleterious(0) probably_damaging(0.968) TCGA-DD-A119-01 17 38179530 38179530 G A MED24 Missense_Mutation p.P702S 0.23 tolerated(0.42) benign(0.326) TCGA-DD-A119-01 17 38182514 38182514 T G MED24 Missense_Mutation p.H627P 0.53 deleterious(0.01) possibly_damaging(0.812) TCGA-DD-A119-01 17 40831707 40831707 C T CCR10 Missense_Mutation p.R318H 0.39 deleterious(0) probably_damaging(0.991) TCGA-DD-A119-01 17 51901222 51901222 C T KIF2B Silent p.N276N 0.35 TCGA-DD-A119-01 17 56586080 56586080 A G MTMR4 Missense_Mutation p.L139P 0.32 deleterious(0.04) possibly_damaging(0.703) TCGA-DD-A119-01 17 77075681 77075681 G C ENGASE Missense_Mutation p.W176S 0.41 deleterious(0) probably_damaging(0.928) TCGA-DD-A119-01 17 79234066 79234066 C T SLC38A10 Silent p.L420L 0.27 TCGA-DD-A119-01 18 13826628 13826628 C T MC5R Silent p.S288S 0.14 TCGA-DD-A119-01 18 29790544 29790544 C A MEP1B Missense_Mutation p.P334T 0.44 deleterious(0) probably_damaging(0.929) TCGA-DD-A119-01 19 15067448 15067448 C T SLC1A6 Missense_Mutation p.G337S 0.09 tolerated(0.24) benign(0.009) TCGA-DD-A119-01 19 43920080 43920080 C T TEX101 Silent p.T21T 0.43 TCGA-DD-A119-01 19 56565030 56565030 C T NLRP5 Missense_Mutation p.A1052V 0.13 tolerated(0.11) benign(0.078) TCGA-DD-A119-01 19 7747540 7747540 A G TRAPPC5 Missense_Mutation p.N134S 0.09 tolerated(0.06) benign(0.03) TCGA-DD-A119-01 1 109394791 109394791 G A AKNAD1 Missense_Mutation p.P166S 0.04 tolerated(0.43) benign(0.016) TCGA-DD-A119-01 1 145076037 145076037 T C PDE4DIP 5'UTR 0.28 TCGA-DD-A119-01 1 151751633 151751633 T C TDRKH Silent p.L169L 0.15 TCGA-DD-A119-01 1 154560696 154560696 G A ADAR Missense_Mutation p.S975F 0.06 deleterious(0) probably_damaging(0.974) TCGA-DD-A119-01 1 18809370 18809370 G A KLHDC7A Missense_Mutation p.R632H 0.47 deleterious(0) benign(0.004) TCGA-DD-A119-01 1 209961719 209961719 A G IRF6 3'UTR 0.17 TCGA-DD-A119-01 1 232650005 232650005 C A SIPA1L2 Missense_Mutation p.A361S 0.67 deleterious(0) probably_damaging(0.997) TCGA-DD-A119-01 1 247654704 247654704 T A OR2W5 RNA 0.08 TCGA-DD-A119-01 1 249106273 249106273 C G SH3BP5L Silent p.L336L 0.14 TCGA-DD-A119-01 1 33741722 33741722 C G ZNF362 Missense_Mutation p.N20K 0.13 deleterious(0) probably_damaging(0.996) TCGA-DD-A119-01 1 62739084 62739084 C A KANK4 Silent p.V564V 0.15 TCGA-DD-A119-01 1 62995054 62995054 T G DOCK7 Silent p.S1194S 0.12 TCGA-DD-A119-01 1 65307245 65307245 G A JAK1 Missense_Mutation p.P815S 0.32 deleterious(0.03) probably_damaging(0.99) TCGA-DD-A119-01 20 13071736 13071736 T A SPTLC3 Missense_Mutation p.L205M 0.35 tolerated(0.13) possibly_damaging(0.517) TCGA-DD-A119-01 20 62729930 62729930 C T OPRL1 Silent p.A297A 0.38 TCGA-DD-A119-01 21 18933790 18933790 A G CXADR Missense_Mutation p.I277V 0.06 deleterious(0.01) possibly_damaging(0.78) TCGA-DD-A119-01 21 31692292 31692292 T G KRTAP26-1 Missense_Mutation p.H21P 0.15 deleterious(0.02) possibly_damaging(0.477) TCGA-DD-A119-01 22 26771552 26771552 G T SEZ6L Missense_Mutation p.A947S 0.39 tolerated(0.17) possibly_damaging(0.844) TCGA-DD-A119-01 22 35661108 35661108 A G HMGXB4 Missense_Mutation p.S243G 0.12 tolerated_low_confidence(0.12) benign(0.002) TCGA-DD-A119-01 2 113127741 113127741 C T RGPD8 3'UTR 0.09 TCGA-DD-A119-01 2 164467698 164467698 T C FIGN Missense_Mutation p.H215R 0.28 tolerated(0.14) benign(0.002) TCGA-DD-A119-01 2 171034778 171034778 A G MYO3B 5'UTR 0.08 TCGA-DD-A119-01 2 231973880 231973880 G A HTR2B Missense_Mutation p.T266I 0.39 deleterious(0.02) probably_damaging(0.993) TCGA-DD-A119-01 2 25965337 25965337 C G ASXL2 Missense_Mutation p.S1290T 0.06 tolerated(0.24) benign(0.009) TCGA-DD-A119-01 2 32399138 32399138 A G SLC30A6 Missense_Mutation p.K33E 0.37 tolerated(0.09) benign(0.139) TCGA-DD-A119-01 2 64863856 64863856 G A SERTAD2 Silent p.N50N 0.11 TCGA-DD-A119-01 3 121527778 121527778 C A IQCB1 Nonsense_Mutation p.E158* 0.38 TCGA-DD-A119-01 3 122512567 122512567 G A HSPBAP1 5'UTR 0.47 TCGA-DD-A119-01 3 130174346 130174346 T C COL6A5 Missense_Mutation p.I2209T 0.13 tolerated_low_confidence(0.11) benign(0.002) TCGA-DD-A119-01 3 186272765 186272765 C T TBCCD1 Missense_Mutation p.S323N 0.08 deleterious(0.01) possibly_damaging(0.735) TCGA-DD-A119-01 3 26751740 26751740 G T LRRC3B Missense_Mutation p.D193Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-DD-A119-01 3 46722798 46722798 C T ALS2CL Silent p.R458R 0.37 TCGA-DD-A119-01 3 47043918 47043918 A T NBEAL2 Missense_Mutation p.M1737L 0.26 deleterious(0.01) possibly_damaging(0.54) TCGA-DD-A119-01 4 140587115 140587115 C G MGST2 5'UTR 0.25 TCGA-DD-A119-01 4 148802995 148802995 G T ARHGAP10 Nonsense_Mutation p.G316* 0.37 TCGA-DD-A119-01 4 148984403 148984403 C A ARHGAP10 Missense_Mutation p.P711H 0.23 tolerated(0.15) benign(0.001) TCGA-DD-A119-01 4 185678997 185678997 C T ACSL1 Silent p.S620S 0.32 TCGA-DD-A119-01 4 25156728 25156728 A G SEPSECS Missense_Mutation p.L198P 0.10 deleterious(0) probably_damaging(1) TCGA-DD-A119-01 5 118464996 118464996 A C DMXL1 Missense_Mutation p.K398T 0.26 deleterious(0) possibly_damaging(0.844) TCGA-DD-A119-01 5 140250200 140250200 G A PCDHA11 Silent p.S504S 0.07 TCGA-DD-A119-01 5 154394167 154394167 A C KIF4B Missense_Mutation p.T250P 0.07 deleterious(0) probably_damaging(0.995) TCGA-DD-A119-01 6 107113765 107113765 A G QRSL1 Missense_Mutation p.K492R 0.10 tolerated(0.26) benign(0.021) TCGA-DD-A119-01 6 26156943 26156943 A T HIST1H1E Nonsense_Mutation p.K109* 0.38 TCGA-DD-A119-01 6 26156946 26156946 A T HIST1H1E Nonsense_Mutation p.K110* 0.38 TCGA-DD-A119-01 6 31623826 31623826 A C APOM Missense_Mutation p.Q28P 0.18 tolerated(0.43) benign(0.003) TCGA-DD-A119-01 6 42933450 42933450 G A PEX6 Nonsense_Mutation p.R814* 0.09 TCGA-DD-A119-01 6 72678720 72678720 T C RIMS1 Missense_Mutation p.C67R 0.09 tolerated(0.14) benign(0.001) TCGA-DD-A119-01 6 84311120 84311120 T A SNAP91 Silent p.A398A 0.60 TCGA-DD-A119-01 7 141619595 141619595 G T OR9A4 Missense_Mutation p.R307L 0.39 deleterious(0.01) benign(0.116) TCGA-DD-A119-01 7 57522850 57522850 A T ZNF716 Missense_Mutation p.N80Y 0.27 deleterious(0.03) probably_damaging(0.911) TCGA-DD-A119-01 7 57522851 57522851 A T ZNF716 Missense_Mutation p.N80I 0.27 deleterious(0.01) possibly_damaging(0.837) TCGA-DD-A119-01 7 98609873 98609873 C T TRRAP Silent p.L3825L 0.20 TCGA-DD-A119-01 8 12884760 12884760 C T KIAA1456 3'UTR 0.12 TCGA-DD-A119-01 8 145748134 145748134 C T LRRC24 Missense_Mutation p.A423T 0.28 tolerated(0.27) benign(0.006) TCGA-DD-A119-01 8 73480279 73480279 C T KCNB2 Missense_Mutation p.R104W 0.07 deleterious(0) probably_damaging(1) TCGA-DD-A119-01 8 77616406 77616406 A G ZFHX4 Missense_Mutation p.D28G 0.09 possibly_damaging(0.728) TCGA-DD-A119-01 8 80553709 80553709 T C STMN2 Missense_Mutation p.L71S 0.13 tolerated(0.32) possibly_damaging(0.663) TCGA-DD-A119-01 9 123156882 123156882 T A CDK5RAP2 Missense_Mutation p.H1829L 0.13 deleterious(0.02) benign(0.057) TCGA-DD-A119-01 9 129598127 129598127 G C ZBTB43 3'UTR 0.22 TCGA-DD-A119-01 9 131670854 131670855 CT - LRRC8A Frame_Shift_Del p.L471Qfs*13 0.32 TCGA-DD-A119-01 9 91617111 91617111 C T S1PR3 Silent p.L332L 0.28 TCGA-DD-A11A-01 10 23730941 23730941 C T OTUD1 3'UTR 0.25 TCGA-DD-A11A-01 10 6553138 6553138 A T PRKCQ Missense_Mutation p.I46N 0.48 deleterious(0) benign(0.106) TCGA-DD-A11A-01 10 82297928 82297928 G T SH2D4B 5'UTR 0.24 TCGA-DD-A11A-01 10 98743690 98743690 G A C10orf12 Missense_Mutation p.C848Y 0.25 deleterious(0.04) benign(0.103) TCGA-DD-A11A-01 11 111624197 111624197 T C PPP2R1B Silent p.L378L 0.19 TCGA-DD-A11A-01 11 116701502 116701502 C T APOC3 Silent p.A23A 0.16 TCGA-DD-A11A-01 11 18050909 18050909 C G TPH1 Splice_Site p.X157_splice 0.26 TCGA-DD-A11A-01 11 18339305 18339305 C T HPS5 Missense_Mutation p.R34H 0.23 deleterious(0) probably_damaging(1) TCGA-DD-A11A-01 11 45975168 45975168 T C PHF21A Silent p.K334K 0.47 TCGA-DD-A11A-01 11 55111334 55111334 C A OR4A16 Missense_Mutation p.L220I 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.654) TCGA-DD-A11A-01 11 55872714 55872714 C A OR8H2 Missense_Mutation p.H66N 0.10 tolerated(0.49) benign(0.191) TCGA-DD-A11A-01 11 6340705 6340705 C T PRKCDBP Silent p.L158L 0.09 TCGA-DD-A11A-01 11 94353216 94353216 C A PIWIL4 Missense_Mutation p.T783N 0.15 deleterious(0) probably_damaging(1) TCGA-DD-A11A-01 12 1192560 1192560 G C ERC1 Missense_Mutation p.Q300H 0.24 tolerated(0.13) benign(0.044) TCGA-DD-A11A-01 12 123311004 123311004 C T CCDC62 3'UTR 0.43 TCGA-DD-A11A-01 12 129028648 129028648 G A TMEM132C Missense_Mutation p.R374K 0.59 tolerated(0.12) benign(0.06) TCGA-DD-A11A-01 12 130649854 130649854 T C FZD10 3'UTR 0.10 TCGA-DD-A11A-01 12 132588968 132588968 G T EP400NL Intron 0.21 TCGA-DD-A11A-01 12 48963012 48963012 T C LALBA Missense_Mutation p.M49V 0.15 tolerated(0.69) benign(0.002) TCGA-DD-A11A-01 12 52845340 52845340 C T KRT6B Missense_Mutation p.A175T 0.10 deleterious(0) probably_damaging(0.996) TCGA-DD-A11A-01 12 53670586 53670586 A T ESPL1 Missense_Mutation p.H628L 0.36 tolerated(0.59) benign(0.045) TCGA-DD-A11A-01 12 64505683 64505683 C T SRGAP1 Silent p.I687I 0.12 TCGA-DD-A11A-01 12 70954625 70954625 C G PTPRB Missense_Mutation p.D1420H 0.11 deleterious(0) probably_damaging(0.967) TCGA-DD-A11A-01 12 70984008 70984008 C G PTPRB Missense_Mutation p.D596H 0.10 tolerated(0.1) benign(0.019) TCGA-DD-A11A-01 12 75875766 75875766 T A GLIPR1 Silent p.S109S 0.22 TCGA-DD-A11A-01 12 85449370 85449370 A G LRRIQ1 Missense_Mutation p.R267G 0.09 tolerated(0.11) possibly_damaging(0.804) TCGA-DD-A11A-01 13 102366888 102366888 T G ITGBL1 Silent p.G460G 0.24 TCGA-DD-A11A-01 13 25435486 25435486 C T RNF17 Silent p.P1285P 0.13 TCGA-DD-A11A-01 13 37619483 37619483 C T SUPT20H Missense_Mutation p.E65K 0.31 deleterious(0) probably_damaging(0.98) TCGA-DD-A11A-01 13 39265592 39265592 A G FREM2 Missense_Mutation p.T1371A 0.10 deleterious(0) probably_damaging(0.965) TCGA-DD-A11A-01 13 60498943 60498943 A C DIAPH3 Silent p.L712L 0.21 TCGA-DD-A11A-01 15 25959333 25959333 C T ATP10A Missense_Mutation p.R611Q 0.33 tolerated(0.79) possibly_damaging(0.794) TCGA-DD-A11A-01 15 28457606 28457606 T A HERC2 Nonsense_Mutation p.K2304* 0.19 TCGA-DD-A11A-01 15 38229051 38229051 G A TMCO5A Silent p.L48L 0.21 TCGA-DD-A11A-01 15 41854881 41854881 G A TYRO3 Missense_Mutation p.G182E 0.64 tolerated(0.64) benign(0.004) TCGA-DD-A11A-01 15 44811383 44811383 G A CTDSPL2 Missense_Mutation p.E377K 0.25 deleterious(0.03) possibly_damaging(0.873) TCGA-DD-A11A-01 15 59464100 59464100 G A MYO1E Missense_Mutation p.L826F 0.21 deleterious(0.01) probably_damaging(0.971) TCGA-DD-A11A-01 16 28913552 28913552 T C ATP2A1 Missense_Mutation p.V790A 0.31 deleterious(0) possibly_damaging(0.589) TCGA-DD-A11A-01 16 31448157 31448157 G A ZNF843 Missense_Mutation p.P5L 0.24 deleterious_low_confidence(0.03) benign(0.008) TCGA-DD-A11A-01 16 81180918 81180918 A G PKD1L2 RNA 0.10 TCGA-DD-A11A-01 16 89924764 89924764 G T SPIRE2 Missense_Mutation p.C374F 0.44 tolerated(0.21) probably_damaging(1) TCGA-DD-A11A-01 16 90126813 90126813 C G PRDM7 Missense_Mutation p.S390T 0.38 tolerated_low_confidence(0.68) benign(0.001) TCGA-DD-A11A-01 17 15449210 15449210 T G TVP23C Missense_Mutation p.K117N 0.41 tolerated(0.27) benign(0.173) TCGA-DD-A11A-01 17 18058480 18058480 G A MYO15A Missense_Mutation p.V2761M 0.50 unknown(0) TCGA-DD-A11A-01 17 18188782 18188782 G A TOP3A Silent p.Y550Y 0.48 TCGA-DD-A11A-01 17 18221376 18221376 G T SMCR8 Missense_Mutation p.G758V 0.24 deleterious(0) possibly_damaging(0.594) TCGA-DD-A11A-01 17 19189061 19189061 G T EPN2 Missense_Mutation p.D242Y 0.24 tolerated_low_confidence(0.15) benign(0.187) TCGA-DD-A11A-01 17 2282393 2282393 C T SGSM2 Missense_Mutation p.S988L 0.39 deleterious(0) probably_damaging(0.995) TCGA-DD-A11A-01 17 39635729 39635729 T A KRT35 Missense_Mutation p.Q194L 0.08 tolerated(0.07) possibly_damaging(0.727) TCGA-DD-A11A-01 17 4864100 4864100 T C SPAG7 Missense_Mutation p.K45R 0.77 tolerated(0.78) benign(0.245) TCGA-DD-A11A-01 17 60757607 60757607 C T MRC2 Missense_Mutation p.S792F 0.21 deleterious(0.01) probably_damaging(0.99) TCGA-DD-A11A-01 17 66873752 66873752 C T ABCA8 Silent p.A1329A 0.19 TCGA-DD-A11A-01 17 7578454 7578455 - CGCGGA TP53 In_Frame_Ins p.V157_R158dup 0.26 TCGA-DD-A11A-01 17 78321374 78321374 A G RNF213 Missense_Mutation p.Y3080C 0.08 probably_damaging(0.999) TCGA-DD-A11A-01 17 80136965 80136965 C T CCDC57 Missense_Mutation p.E438K 0.19 deleterious(0) probably_damaging(1) TCGA-DD-A11A-01 18 13017337 13017337 T C CEP192 Splice_Site p.X263_splice 0.10 TCGA-DD-A11A-01 18 24442273 24442273 G T AQP4 Missense_Mutation p.T107N 0.26 deleterious(0.02) probably_damaging(0.969) TCGA-DD-A11A-01 18 6887166 6887166 C T ARHGAP28 Silent p.H329H 0.27 TCGA-DD-A11A-01 19 13920011 13920011 G T ZSWIM4 Missense_Mutation p.C330F 0.38 deleterious(0.01) possibly_damaging(0.506) TCGA-DD-A11A-01 19 17831786 17831786 G C MAP1S Missense_Mutation p.D54H 0.23 deleterious(0) possibly_damaging(0.835) TCGA-DD-A11A-01 19 34916969 34916969 C G PDCD2L Missense_Mutation p.P341A 0.33 deleterious(0.04) possibly_damaging(0.836) TCGA-DD-A11A-01 19 36692951 36692951 T C ZNF565 Intron 0.19 TCGA-DD-A11A-01 19 39996002 39996002 C G DLL3 Missense_Mutation p.S335C 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-DD-A11A-01 19 40903901 40903901 G T PRX Intron 0.32 TCGA-DD-A11A-01 19 44739856 44739856 A T ZNF227 Missense_Mutation p.I425F 0.24 tolerated(0.05) probably_damaging(0.984) TCGA-DD-A11A-01 19 53014087 53014087 T A ZNF578 Silent p.P151P 0.29 TCGA-DD-A11A-01 19 53854648 53854648 G A ZNF845 Silent p.A240A 0.06 TCGA-DD-A11A-01 19 54695669 54695669 A G TSEN34 Missense_Mutation p.E114G 0.22 tolerated(0.08) benign(0.001) TCGA-DD-A11A-01 19 6458301 6458301 C T SLC25A23 Missense_Mutation p.G64D 0.92 tolerated(0.05) possibly_damaging(0.606) TCGA-DD-A11A-01 1 11169374 11169374 T A MTOR Missense_Mutation p.I2501F 0.09 deleterious(0.01) possibly_damaging(0.86) TCGA-DD-A11A-01 1 154527970 154527970 A C UBE2Q1 Missense_Mutation p.C157W 0.41 deleterious(0) probably_damaging(0.996) TCGA-DD-A11A-01 1 156006663 156006663 G A UBQLN4 3'UTR 0.18 TCGA-DD-A11A-01 1 164781342 164781342 C A PBX1 Missense_Mutation p.A318D 0.13 tolerated(0.07) benign(0.082) TCGA-DD-A11A-01 1 179631316 179631316 T A TDRD5 Silent p.P800P 0.59 TCGA-DD-A11A-01 1 183111719 183111719 C G LAMC1 Missense_Mutation p.L1542V 0.14 deleterious(0) probably_damaging(0.996) TCGA-DD-A11A-01 1 183944304 183944304 C T COLGALT2 Missense_Mutation p.R140Q 0.18 deleterious(0) probably_damaging(0.981) TCGA-DD-A11A-01 1 205039578 205039578 T C CNTN2 Missense_Mutation p.V819A 0.20 deleterious(0) possibly_damaging(0.617) TCGA-DD-A11A-01 1 207789962 207789962 A T CR1 Missense_Mutation p.H2235L 0.25 deleterious(0.02) probably_damaging(0.996) TCGA-DD-A11A-01 1 228511096 228511096 C T OBSCN Silent p.C6104C 0.19 TCGA-DD-A11A-01 1 245862258 245862258 G A KIF26B Missense_Mutation p.A2033T 0.74 deleterious(0.03) unknown(0) TCGA-DD-A11A-01 1 248112614 248112614 C A OR2L8 Nonsense_Mutation p.S152* 0.22 TCGA-DD-A11A-01 1 248436686 248436686 A G OR2T33 Missense_Mutation p.M144T 0.27 tolerated(0.17) benign(0.04) TCGA-DD-A11A-01 1 32151735 32151735 C T COL16A1 Missense_Mutation p.G614E 0.54 unknown(0) TCGA-DD-A11A-01 1 35852772 35852772 C T ZMYM4 Missense_Mutation p.L669F 0.10 tolerated(0.53) possibly_damaging(0.465) TCGA-DD-A11A-01 1 36565805 36565805 C T COL8A2 Silent p.L13L 0.57 TCGA-DD-A11A-01 1 4772503 4772503 C G AJAP1 Silent p.A191A 0.35 TCGA-DD-A11A-01 1 57320511 57320511 C G C8A 5'UTR 0.27 TCGA-DD-A11A-01 1 67266850 67266850 C A INSL5 Nonsense_Mutation p.E19* 0.41 TCGA-DD-A11A-01 1 68955231 68955232 - T DEPDC1 Frame_Shift_Ins p.N125Kfs*10 0.09 TCGA-DD-A11A-01 1 70740488 70740488 C G ANKRD13C Missense_Mutation p.G437R 0.19 deleterious(0) probably_damaging(0.989) TCGA-DD-A11A-01 1 97544430 97544430 T G DPYD 3'UTR 0.21 TCGA-DD-A11A-01 20 35383170 35383170 C T DSN1 Silent p.Q319Q 0.22 TCGA-DD-A11A-01 20 62729669 62729676 CTGGGGCC - OPRL1 Frame_Shift_Del p.W211Gfs*111 0.11 TCGA-DD-A11A-01 21 30699058 30699058 G A BACH1 Missense_Mutation p.E305K 0.41 tolerated(0.15) benign(0.054) TCGA-DD-A11A-01 21 45712255 45712255 C T AIRE Missense_Mutation p.R356W 0.28 deleterious(0) possibly_damaging(0.855) TCGA-DD-A11A-01 22 21161719 21161719 T C PI4KA Missense_Mutation p.T367A 0.50 tolerated(0.07) benign(0.004) TCGA-DD-A11A-01 22 42607990 42607990 C G TCF20 Missense_Mutation p.V1108L 0.13 possibly_damaging(0.78) TCGA-DD-A11A-01 2 10132262 10132262 G A GRHL1 Silent p.Q483Q 0.40 TCGA-DD-A11A-01 2 110376473 110376473 G T SOWAHC 3'UTR 0.45 TCGA-DD-A11A-01 2 121726310 121726310 C T GLI2 Missense_Mutation p.R222W 0.11 deleterious(0) probably_damaging(0.997) TCGA-DD-A11A-01 2 137928455 137928455 G A THSD7B Missense_Mutation p.G557E 0.19 tolerated(0.17) probably_damaging(0.969) TCGA-DD-A11A-01 2 141264466 141264466 T G LRP1B Missense_Mutation p.E2807A 0.44 possibly_damaging(0.621) TCGA-DD-A11A-01 2 152552146 152552146 G C NEB Silent p.P540P 0.10 TCGA-DD-A11A-01 2 179588199 179588199 C T TTN Missense_Mutation p.V7210M 0.30 TCGA-DD-A11A-01 2 179638382 179638382 C A TTN Missense_Mutation p.K2467N 0.05 TCGA-DD-A11A-01 2 179659228 179659228 G C TTN Silent p.A432A 0.37 TCGA-DD-A11A-01 2 30454487 30454487 C A LBH 5'UTR 0.45 TCGA-DD-A11A-01 2 32466120 32466120 C G NLRC4 Missense_Mutation p.E778Q 0.10 tolerated(0.54) benign(0.033) TCGA-DD-A11A-01 3 118649063 118649063 G T IGSF11 Missense_Mutation p.Q38K 0.05 deleterious(0.02) benign(0.141) TCGA-DD-A11A-01 3 128181899 128181899 G A DNAJB8 Silent p.L64L 0.11 TCGA-DD-A11A-01 3 129303388 129303388 G A PLXND1 Silent p.I623I 0.48 TCGA-DD-A11A-01 3 133673915 133673915 C T SLCO2A1 Missense_Mutation p.V174M 0.42 tolerated(0.09) probably_damaging(0.996) TCGA-DD-A11A-01 3 169846627 169846627 G C PHC3 Missense_Mutation p.Q545E 0.34 tolerated(0.09) probably_damaging(0.985) TCGA-DD-A11A-01 3 25665077 25665077 G A TOP2B Missense_Mutation p.P881S 0.23 deleterious(0.01) possibly_damaging(0.749) TCGA-DD-A11A-01 3 25835782 25835782 G T OXSM Missense_Mutation p.V393F 0.15 deleterious(0) possibly_damaging(0.588) TCGA-DD-A11A-01 3 46755769 46755769 G A PRSS50 Silent p.D231D 0.68 TCGA-DD-A11A-01 3 47371491 47371491 T C KLHL18 Missense_Mutation p.M151T 0.17 tolerated(0.42) possibly_damaging(0.683) TCGA-DD-A11A-01 3 49756547 49756547 A G AMIGO3 Missense_Mutation p.S118P 0.11 deleterious(0) probably_damaging(0.986) TCGA-DD-A11A-01 3 49936589 49936589 T C MST1R Silent p.V446V 0.13 TCGA-DD-A11A-01 3 63975996 63975996 G T ATXN7 Missense_Mutation p.E502D 0.16 tolerated(0.25) possibly_damaging(0.73) TCGA-DD-A11A-01 3 64084858 64084858 G T PRICKLE2 Silent p.R802R 0.17 TCGA-DD-A11A-01 3 9754230 9754230 T C CPNE9 Missense_Mutation p.V128A 0.13 tolerated(0.75) benign(0.075) TCGA-DD-A11A-01 4 126371628 126371628 G C FAT4 Missense_Mutation p.D3153H 0.17 probably_damaging(1) TCGA-DD-A11A-01 4 15601277 15601277 A G CC2D2A Missense_Mutation p.D1541G 0.07 tolerated(0.3) benign(0.003) TCGA-DD-A11A-01 4 156289738 156289738 C A MAP9 Missense_Mutation p.E236D 0.33 deleterious(0.01) possibly_damaging(0.794) TCGA-DD-A11A-01 4 169923357 169923357 C G CBR4 Splice_Site p.X134_splice 0.45 TCGA-DD-A11A-01 4 17847278 17847278 T G NCAPG 3'Flank 0.19 TCGA-DD-A11A-01 4 21950328 21950328 G A KCNIP4 5'UTR 0.11 TCGA-DD-A11A-01 4 23815325 23815325 C A PPARGC1A Missense_Mutation p.R594I 0.20 deleterious_low_confidence(0) unknown(0) TCGA-DD-A11A-01 4 31144428 31144428 C T PCDH7 Missense_Mutation p.P1242L 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.518) TCGA-DD-A11A-01 4 42145706 42145706 G T BEND4 Missense_Mutation p.P265T 0.07 tolerated_low_confidence(0.24) benign(0.025) TCGA-DD-A11A-01 4 89591339 89591339 A T HERC3 Missense_Mutation p.E616V 0.32 deleterious(0) possibly_damaging(0.827) TCGA-DD-A11A-01 5 102613704 102613704 T C C5orf30 3'UTR 0.28 TCGA-DD-A11A-01 5 125759319 125759319 T C GRAMD3 Intron 0.53 TCGA-DD-A11A-01 5 134143603 134143603 C T DDX46 Missense_Mutation p.A707V 0.27 tolerated(1) benign(0.01) TCGA-DD-A11A-01 5 149677216 149677216 C T ARSI Nonsense_Mutation p.W424* 0.36 TCGA-DD-A11A-01 5 49724007 49724007 G A EMB Missense_Mutation p.S56F 0.21 tolerated(0.08) benign(0.025) TCGA-DD-A11A-01 5 52405551 52405551 C T MOCS2 5'UTR 0.43 TCGA-DD-A11A-01 5 79817821 79817821 G T FAM151B Splice_Site p.X179_splice 0.09 TCGA-DD-A11A-01 5 94025298 94025298 G T ANKRD32 Missense_Mutation p.K802N 0.30 deleterious(0.02) probably_damaging(0.995) TCGA-DD-A11A-01 6 133078572 133078572 C T VNN2 Silent p.P109P 0.10 TCGA-DD-A11A-01 6 136913604 136913604 A G MAP3K5 Silent p.D1009D 0.17 TCGA-DD-A11A-01 6 150569974 150569974 A G PPP1R14C 3'UTR 0.08 TCGA-DD-A11A-01 6 22570186 22570186 G A HDGFL1 Missense_Mutation p.E128K 0.42 tolerated(0.13) benign(0.002) TCGA-DD-A11A-01 6 26158595 26158595 C T HIST1H2BD Silent p.F66F 0.14 TCGA-DD-A11A-01 6 29574930 29574930 C A GABBR1 Missense_Mutation p.W686C 0.10 deleterious(0) probably_damaging(1) TCGA-DD-A11A-01 6 31778842 31778842 C T HSPA1L Missense_Mutation p.R303Q 0.53 deleterious_low_confidence(0) benign(0.019) TCGA-DD-A11A-01 6 33053656 33053656 G T HLA-DPB1 Missense_Mutation p.R249S 0.07 deleterious(0) benign(0.394) TCGA-DD-A11A-01 6 36823793 36823793 T C PPIL1 Silent p.A99A 0.56 TCGA-DD-A11A-01 6 39895091 39895091 A G MOCS1 Missense_Mutation p.L76P 0.15 deleterious(0) probably_damaging(0.985) TCGA-DD-A11A-01 6 47763244 47763244 C A OPN5 Missense_Mutation p.A234D 0.09 deleterious(0.01) possibly_damaging(0.719) TCGA-DD-A11A-01 7 123594436 123594436 C T SPAM1 Missense_Mutation p.P271L 0.10 tolerated(0.15) benign(0.002) TCGA-DD-A11A-01 7 135390908 135390908 C T SLC13A4 Missense_Mutation p.G169D 0.12 tolerated(0.24) benign(0.297) TCGA-DD-A11A-01 7 137075862 137075862 G T DGKI 3'UTR 0.19 TCGA-DD-A11A-01 7 142724155 142724155 A C OR9A2 Missense_Mutation p.L22R 0.34 deleterious(0.02) benign(0.043) TCGA-DD-A11A-01 7 151664464 151664464 G A GALNTL5 Missense_Mutation p.A45T 0.68 tolerated(0.62) benign(0.005) TCGA-DD-A11A-01 7 1519278 1519278 G C INTS1 Missense_Mutation p.P1373A 0.19 tolerated(0.98) benign(0.001) TCGA-DD-A11A-01 7 30951862 30951862 C T AQP1 Missense_Mutation p.S113L 0.10 tolerated(0.07) benign(0.019) TCGA-DD-A11A-01 7 34698055 34698055 G A NPSR1 Missense_Mutation p.D11N 0.34 tolerated_low_confidence(0.82) benign(0.002) TCGA-DD-A11A-01 7 44149823 44149823 C A AEBP1 Missense_Mutation p.D426E 0.10 tolerated(0.11) possibly_damaging(0.639) TCGA-DD-A11A-01 7 72849249 72849250 - CAG FZD9 In_Frame_Ins p.Q305dup 0.23 TCGA-DD-A11A-01 7 72903721 72903721 T C BAZ1B Missense_Mutation p.I232V 0.53 tolerated(1) benign(0.009) TCGA-DD-A11A-01 7 82583266 82583266 A G PCLO Silent p.L2335L 0.23 TCGA-DD-A11A-01 7 84697509 84697509 G T SEMA3D Missense_Mutation p.T196K 0.13 deleterious(0.02) possibly_damaging(0.688) TCGA-DD-A11A-01 8 143763558 143763558 G A PSCA 3'UTR 0.29 TCGA-DD-A11A-01 8 144550407 144550407 G T ZC3H3 Missense_Mutation p.P716H 0.40 deleterious(0) probably_damaging(0.999) TCGA-DD-A11A-01 8 145623090 145623090 G C CPSF1 Missense_Mutation p.S693C 0.24 tolerated(0.06) possibly_damaging(0.864) TCGA-DD-A11A-01 8 17421125 17421125 C A SLC7A2 Missense_Mutation p.P602Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-DD-A11A-01 8 20004896 20004896 G T SLC18A1 Missense_Mutation p.S446Y 0.16 deleterious(0.01) probably_damaging(0.971) TCGA-DD-A11A-01 8 71039123 71039123 C T NCOA2 Missense_Mutation p.G1281S 0.15 tolerated(0.74) probably_damaging(0.984) TCGA-DD-A11A-01 8 72233982 72233982 G T EYA1 Silent p.G135G 0.14 TCGA-DD-A11A-01 8 97345763 97345763 C T PTDSS1 Missense_Mutation p.S464L 0.16 tolerated(0.1) benign(0.024) TCGA-DD-A11A-01 9 111658811 111658811 C G IKBKAP Missense_Mutation p.D901H 0.31 deleterious(0) probably_damaging(0.989) TCGA-DD-A11A-01 9 17795714 17795714 G A SH3GL2 Silent p.V344V 0.22 TCGA-DD-A11A-01 9 21334288 21334288 G A KLHL9 Silent p.L191L 0.19 TCGA-DD-A11A-01 9 34371283 34371283 C A KIAA1161 Missense_Mutation p.M519I 0.59 deleterious(0.01) benign(0.301) TCGA-DD-A11A-01 9 39140553 39140553 G T CNTNAP3 Silent p.G613G 0.19 TCGA-DD-A11A-01 X 147084806 147084806 A C FMR1NB Silent p.A121A 0.06 TCGA-DD-A11A-01 X 18622799 18622799 G A CDKL5 Silent p.L585L 0.68 TCGA-DD-A11A-01 X 83129262 83129262 G A CYLC1 Missense_Mutation p.D516N 0.35 tolerated(0.2) benign(0.1) TCGA-DD-A11B-01 10 99081300 99081300 G A FRAT1 3'UTR 0.38 TCGA-DD-A11B-01 11 1096485 1096485 G - MUC2 Frame_Shift_Del p.V2171Cfs*17 0.27 TCGA-DD-A11B-01 11 15994640 15994640 T A SOX6 Silent p.P714P 0.47 TCGA-DD-A11B-01 11 1856575 1856575 C A SYT8 Silent p.L62L 0.43 TCGA-DD-A11B-01 11 57100232 57100232 C T SSRP1 Missense_Mutation p.G212D 0.51 deleterious(0) probably_damaging(1) TCGA-DD-A11B-01 12 122097220 122097220 G A MORN3 Silent p.A60A 0.36 TCGA-DD-A11B-01 12 27915669 27915669 T C MANSC4 3'Flank 0.39 TCGA-DD-A11B-01 12 29597095 29597095 A G OVCH1 Silent p.S1000S 0.36 TCGA-DD-A11B-01 12 39688230 39688230 T C KIF21A Missense_Mutation p.N1674S 0.34 tolerated_low_confidence(0.08) benign(0.006) TCGA-DD-A11B-01 12 57111880 57111880 G A NACA Intron 0.46 TCGA-DD-A11B-01 12 7078680 7078680 G A PHB2 Silent p.S91S 0.49 TCGA-DD-A11B-01 13 45147977 45147977 G A TSC22D1 Missense_Mutation p.P745L 0.38 deleterious(0) benign(0.149) TCGA-DD-A11B-01 14 45658561 45658561 A G FANCM Missense_Mutation p.Q1779R 0.32 tolerated(0.46) benign(0.041) TCGA-DD-A11B-01 14 80971304 80971304 C A CEP128 Missense_Mutation p.W1044C 0.33 tolerated(0.05) benign(0.04) TCGA-DD-A11B-01 15 49172063 49172063 T A EID1 3'UTR 0.46 TCGA-DD-A11B-01 15 63932493 63932493 T C HERC1 Missense_Mutation p.N3920S 0.08 benign(0) TCGA-DD-A11B-01 15 64021693 64021693 T A HERC1 Intron 0.40 TCGA-DD-A11B-01 16 51171120 51171120 G A SALL1 Missense_Mutation p.P1293L 0.68 deleterious(0) benign(0.017) TCGA-DD-A11B-01 17 17719328 17719328 G A SREBF1 Silent p.S773S 0.39 TCGA-DD-A11B-01 17 30669160 30669160 G A C17orf75 5'UTR 0.46 TCGA-DD-A11B-01 17 5392627 5392627 C T MIS12 Nonsense_Mutation p.Q149* 0.08 TCGA-DD-A11B-01 17 56052168 56052168 G C VEZF1 Missense_Mutation p.T411S 0.42 tolerated_low_confidence(0.57) benign(0.011) TCGA-DD-A11B-01 17 57738828 57738828 A G CLTC Missense_Mutation p.I398V 0.38 tolerated(0.13) benign(0.018) TCGA-DD-A11B-01 17 78011929 78011929 C T CCDC40 Missense_Mutation p.P13S 0.48 tolerated_low_confidence(0.2) benign(0.081) TCGA-DD-A11B-01 19 11517408 11517408 A T RGL3 Missense_Mutation p.L257H 0.59 deleterious(0) probably_damaging(1) TCGA-DD-A11B-01 19 1221320 1221320 G A STK11 Silent p.P281P 0.38 TCGA-DD-A11B-01 19 12975699 12975699 G T MAST1 Silent p.T481T 0.46 TCGA-DD-A11B-01 19 15350762 15350762 G A BRD4 Missense_Mutation p.H1081Y 0.42 benign(0.227) TCGA-DD-A11B-01 19 22364225 22364225 A - ZNF676 Frame_Shift_Del p.Y98* 0.30 TCGA-DD-A11B-01 19 35174079 35174079 A G ZNF302 Silent p.P50P 0.41 TCGA-DD-A11B-01 19 36211168 36211168 T C KMT2B Missense_Mutation p.F307L 0.41 unknown(0) TCGA-DD-A11B-01 19 6682236 6682236 G C C3 Missense_Mutation p.R1393G 0.35 deleterious(0) benign(0.002) TCGA-DD-A11B-01 1 14925544 14925544 G C KAZN Missense_Mutation p.Q17H 0.73 deleterious(0) possibly_damaging(0.781) TCGA-DD-A11B-01 1 151689156 151689156 A C CELF3 5'UTR 0.34 TCGA-DD-A11B-01 1 151810372 151810372 T G C2CD4D 3'UTR 0.61 TCGA-DD-A11B-01 1 156552954 156552954 G T TTC24 Missense_Mutation p.R344L 0.27 deleterious(0.01) possibly_damaging(0.753) TCGA-DD-A11B-01 1 160388964 160388964 C T VANGL2 Missense_Mutation p.T122M 0.26 deleterious(0) probably_damaging(0.993) TCGA-DD-A11B-01 1 162353415 162353415 C T C1orf226 Missense_Mutation p.A297V 0.35 tolerated(0.05) possibly_damaging(0.895) TCGA-DD-A11B-01 1 167095694 167095694 C T DUSP27 Silent p.S442S 0.33 TCGA-DD-A11B-01 1 172413127 172413127 C A PIGC 5'UTR 0.61 TCGA-DD-A11B-01 1 183617170 183617170 A T APOBEC4 Missense_Mutation p.N249K 0.26 tolerated(0.49) benign(0.006) TCGA-DD-A11B-01 1 26694190 26694190 A G ZNF683 Silent p.S71S 0.08 TCGA-DD-A11B-01 20 34041779 34041779 T C GDF5 Intron 0.26 TCGA-DD-A11B-01 21 34841213 34841213 T A TMEM50B 5'UTR 0.35 TCGA-DD-A11B-01 22 50688345 50688345 C A HDAC10 Silent p.V146V 0.46 TCGA-DD-A11B-01 2 133538773 133538773 T G NCKAP5 Missense_Mutation p.E1634A 0.44 tolerated(0.06) possibly_damaging(0.558) TCGA-DD-A11B-01 2 180036920 180036920 T C SESTD1 Missense_Mutation p.K99R 0.39 deleterious(0.02) probably_damaging(0.946) TCGA-DD-A11B-01 2 202245372 202245372 A T TRAK2 Nonsense_Mutation p.L880* 0.41 TCGA-DD-A11B-01 2 233877926 233877926 A T AC106876.2 Missense_Mutation p.K65N 0.40 possibly_damaging(0.617) TCGA-DD-A11B-01 2 39996165 39996165 T C THUMPD2 Intron 0.37 TCGA-DD-A11B-01 3 142525018 142525018 A G TRPC1 Missense_Mutation p.I775V 0.43 tolerated(0.5) benign(0.004) TCGA-DD-A11B-01 3 164907129 164907129 G A SLITRK3 Missense_Mutation p.P497L 0.51 deleterious(0.02) probably_damaging(0.957) TCGA-DD-A11B-01 3 180320104 180320104 T G TTC14 Missense_Mutation p.S19A 0.41 tolerated(0.17) benign(0.041) TCGA-DD-A11B-01 3 40442397 40442397 C T ENTPD3 Silent p.L61L 0.44 TCGA-DD-A11B-01 3 9792677 9792677 A C OGG1 Missense_Mutation p.Q62H 0.33 tolerated(0.12) benign(0.029) TCGA-DD-A11B-01 4 151000159 151000159 G A DCLK2 5'Flank 0.76 TCGA-DD-A11B-01 4 69795464 69795464 C A UGT2A3 3'UTR 0.30 TCGA-DD-A11B-01 5 1079607 1079607 G A SLC12A7 Silent p.I434I 0.26 TCGA-DD-A11B-01 5 145483862 145483862 C T PLAC8L1 Missense_Mutation p.G5R 0.39 tolerated_low_confidence(0.22) benign(0.046) TCGA-DD-A11B-01 5 41201723 41201723 G A C6 Silent p.P79P 0.42 TCGA-DD-A11B-01 6 30138279 30138279 T C TRIM15 Missense_Mutation p.C245R 0.08 deleterious(0.01) benign(0.293) TCGA-DD-A11B-01 6 74227627 74227627 G A EEF1A1 Missense_Mutation p.T432I 0.35 deleterious_low_confidence(0.03) possibly_damaging(0.58) TCGA-DD-A11B-01 6 74227628 74227628 T A EEF1A1 Missense_Mutation p.T432S 0.36 deleterious_low_confidence(0) benign(0.007) TCGA-DD-A11B-01 7 107704297 107704298 CT - LAMB4 Frame_Shift_Del p.E990Vfs*54 0.27 TCGA-DD-A11B-01 7 5681008 5681008 C A RNF216 Splice_Site p.X720_splice 0.47 TCGA-DD-A11B-01 8 145735131 145735131 C T MFSD3 Nonsense_Mutation p.Q139* 0.45 TCGA-DD-A11B-01 8 38008314 38008314 A G STAR Missense_Mutation p.L8P 0.44 deleterious(0) probably_damaging(1) TCGA-DD-A11B-01 8 61496802 61496802 G T RAB2A Silent p.S74S 0.34 TCGA-DD-A11B-01 9 116152930 116152930 G A ALAD Missense_Mutation p.R142W 0.60 deleterious(0.01) possibly_damaging(0.594) TCGA-DD-A11B-01 9 129598749 129598749 G T ZBTB43 3'UTR 0.78 TCGA-DD-A11B-01 9 136339125 136339125 C A SLC2A6 Missense_Mutation p.R338L 0.68 deleterious(0) probably_damaging(1) TCGA-DD-A11B-01 9 35732606 35732606 G C CREB3 5'UTR 0.69 TCGA-DD-A11B-01 9 91616620 91616620 G T S1PR3 Missense_Mutation p.G169C 0.77 deleterious(0) probably_damaging(0.999) TCGA-DD-A11B-01 X 149814213 149814213 C T MTM1 Missense_Mutation p.L246F 0.88 deleterious(0.01) probably_damaging(1) TCGA-DD-A11B-01 X 55172691 55172691 T C FAM104B Silent p.R59R 0.08 TCGA-DD-A11B-01 Y 4925135 4925135 A T PCDH11Y Missense_Mutation p.T91S 0.05 tolerated(1) benign(0.001) TCGA-DD-A11C-01 10 105162878 105162878 C T PDCD11 Silent p.L80L 0.26 TCGA-DD-A11C-01 10 115457351 115457351 G A CASP7 Silent p.P66P 0.23 TCGA-DD-A11C-01 10 43650967 43650967 C T CSGALNACT2 Missense_Mutation p.L124F 0.54 tolerated(0.26) probably_damaging(1) TCGA-DD-A11C-01 10 72324191 72324191 T C PALD1 Silent p.Y778Y 0.23 TCGA-DD-A11C-01 10 75830792 75830792 G - VCL Frame_Shift_Del p.V151Wfs*18 0.40 TCGA-DD-A11C-01 10 81850592 81850592 G C TMEM254 Missense_Mutation p.W97C 0.33 deleterious(0) probably_damaging(0.999) TCGA-DD-A11C-01 11 120530999 120530999 G T GRIK4 5'UTR 0.52 TCGA-DD-A11C-01 11 121383718 121383718 T C SORL1 Silent p.L316L 0.35 TCGA-DD-A11C-01 11 123753908 123753908 A T TMEM225 Silent p.R205R 0.45 TCGA-DD-A11C-01 11 14990439 14990439 A T CALCA Missense_Mutation p.I111N 0.49 deleterious(0) possibly_damaging(0.656) TCGA-DD-A11C-01 11 1606219 1606219 C A KRTAP5-1 Silent p.G87G 0.42 TCGA-DD-A11C-01 11 40137651 40137651 C T LRRC4C Silent p.R64R 0.42 TCGA-DD-A11C-01 11 43923153 43923153 A T ALKBH3 Missense_Mutation p.N183Y 0.41 deleterious(0) probably_damaging(0.927) TCGA-DD-A11C-01 11 57569523 57569523 C T CTNND1 Silent p.H425H 0.50 TCGA-DD-A11C-01 11 59856205 59856205 T C MS4A2 5'UTR 0.56 TCGA-DD-A11C-01 11 63533331 63533331 T C C11orf95 RNA 0.16 TCGA-DD-A11C-01 11 65810617 65810617 G A GAL3ST3 Silent p.D219D 0.48 TCGA-DD-A11C-01 11 7021165 7021165 T G ZNF214 Missense_Mutation p.K583N 0.31 deleterious(0) possibly_damaging(0.712) TCGA-DD-A11C-01 11 88583097 88583097 C T GRM5 Silent p.A296A 0.54 TCGA-DD-A11C-01 12 53457144 53457144 G A TENC1 Missense_Mutation p.R1345H 0.43 deleterious(0.02) benign(0.05) TCGA-DD-A11C-01 12 54975806 54975806 T C PPP1R1A Silent p.P119P 0.09 TCGA-DD-A11C-01 12 56648360 56648360 A G ANKRD52 Splice_Site p.X231_splice 0.10 TCGA-DD-A11C-01 12 57556190 57556190 G T LRP1 Missense_Mutation p.V765F 0.42 benign(0.282) TCGA-DD-A11C-01 13 36049572 36049572 G A MAB21L1 Missense_Mutation p.A235V 0.84 tolerated(0.5) benign(0.003) TCGA-DD-A11C-01 14 24884257 24884257 T C NYNRIN Missense_Mutation p.M1101T 0.35 deleterious(0.04) benign(0.006) TCGA-DD-A11C-01 14 75140804 75140804 A T AREL1 Missense_Mutation p.V364E 0.27 deleterious(0) possibly_damaging(0.462) TCGA-DD-A11C-01 14 94467500 94467500 G T LINC00521 RNA 0.81 TCGA-DD-A11C-01 14 96795907 96795907 T G ATG2B Missense_Mutation p.S599R 0.61 tolerated(0.06) probably_damaging(0.974) TCGA-DD-A11C-01 15 35085586 35085586 G A ACTC1 Missense_Mutation p.T105I 0.70 tolerated_low_confidence(0.23) benign(0.034) TCGA-DD-A11C-01 15 43827486 43827486 C G PPIP5K1 Missense_Mutation p.E1230Q 0.41 tolerated_low_confidence(0.56) benign(0.001) TCGA-DD-A11C-01 16 111695 111695 C T RHBDF1 Splice_Site p.X403_splice 0.49 TCGA-DD-A11C-01 16 2149979 2149979 C A PKD1 Missense_Mutation p.R3269L 0.45 probably_damaging(0.983) TCGA-DD-A11C-01 16 29816332 29816332 C A KIF22 Missense_Mutation p.H625Q 0.40 tolerated(0.06) probably_damaging(0.999) TCGA-DD-A11C-01 16 29912566 29912566 C T ASPHD1 Missense_Mutation p.L92F 0.19 deleterious(0.01) probably_damaging(0.986) TCGA-DD-A11C-01 16 57596061 57596061 C T GPR114 Missense_Mutation p.A19V 0.51 tolerated(0.3) benign(0.001) TCGA-DD-A11C-01 16 71963537 71963537 A T IST1 3'Flank 0.43 TCGA-DD-A11C-01 16 72090515 72090515 C A HP Missense_Mutation p.R59S 0.30 tolerated(0.54) benign(0.017) TCGA-DD-A11C-01 17 40024989 40024989 C T ACLY Missense_Mutation p.V1062M 0.46 deleterious(0) possibly_damaging(0.89) TCGA-DD-A11C-01 17 47284179 47284179 G A GNGT2 Silent p.L50L 0.39 TCGA-DD-A11C-01 17 56247344 56247344 G T OR4D2 Missense_Mutation p.A110S 0.25 tolerated(0.24) benign(0.046) TCGA-DD-A11C-01 17 80017940 80017940 C A DUS1L Missense_Mutation p.G351V 0.17 tolerated(0.09) benign(0.002) TCGA-DD-A11C-01 18 45555810 45555810 G A ZBTB7C Missense_Mutation p.R561C 0.50 deleterious_low_confidence(0.04) benign(0) TCGA-DD-A11C-01 18 9255525 9255525 A T ANKRD12 Missense_Mutation p.I754F 0.42 tolerated_low_confidence(0.14) benign(0.001) TCGA-DD-A11C-01 19 10404831 10404831 G A ICAM5 Silent p.V609V 0.46 TCGA-DD-A11C-01 19 10753056 10753056 G A SLC44A2 Missense_Mutation p.G648D 0.41 deleterious(0) probably_damaging(0.985) TCGA-DD-A11C-01 19 18188364 18188364 G A IL12RB1 Nonsense_Mutation p.Q171* 0.39 TCGA-DD-A11C-01 19 20117276 20117276 T C ZNF682 Silent p.E345E 0.12 TCGA-DD-A11C-01 19 36106172 36106172 G A HAUS5 Silent p.Q123Q 0.54 TCGA-DD-A11C-01 19 45730995 45730995 G T EXOC3L2 Missense_Mutation p.P110Q 0.35 tolerated(0.56) probably_damaging(0.993) TCGA-DD-A11C-01 19 52716334 52716334 C G PPP2R1A Missense_Mutation p.R260G 0.48 deleterious(0) probably_damaging(1) TCGA-DD-A11C-01 19 6919616 6919616 G A EMR1 Missense_Mutation p.R493H 0.45 tolerated(0.13) benign(0.008) TCGA-DD-A11C-01 1 103461593 103461593 G A COL11A1 Silent p.P749P 0.89 TCGA-DD-A11C-01 1 12920107 12920107 C T PRAMEF2 Missense_Mutation p.H283Y 0.33 tolerated(0.66) benign(0.003) TCGA-DD-A11C-01 1 145474731 145474731 T A ANKRD34A Nonsense_Mutation p.L468* 0.36 TCGA-DD-A11C-01 1 152280175 152280175 T C FLG Missense_Mutation p.H2396R 0.32 benign(0.227) TCGA-DD-A11C-01 1 160388869 160388869 C T VANGL2 Silent p.R90R 0.18 TCGA-DD-A11C-01 1 16257658 16257658 T G SPEN Missense_Mutation p.S1641R 0.31 benign(0.082) TCGA-DD-A11C-01 1 169446920 169446920 A G SLC19A2 Missense_Mutation p.Y94H 0.30 deleterious(0) probably_damaging(0.965) TCGA-DD-A11C-01 1 179013021 179013021 C T FAM20B Silent p.L13L 0.37 TCGA-DD-A11C-01 1 200960199 200960199 C A KIF21B Missense_Mutation p.D845Y 0.27 deleterious(0) possibly_damaging(0.903) TCGA-DD-A11C-01 1 203020717 203020717 G A PPFIA4 5'UTR 0.32 TCGA-DD-A11C-01 1 205084043 205084043 G A RBBP5 Missense_Mutation p.T31I 0.32 tolerated(0.08) benign(0.425) TCGA-DD-A11C-01 1 214557484 214557484 G A PTPN14 Missense_Mutation p.R572W 0.36 tolerated(0.17) benign(0.386) TCGA-DD-A11C-01 1 247162655 247162655 T C ZNF695 Missense_Mutation p.H85R 0.43 tolerated(0.21) benign(0.118) TCGA-DD-A11C-01 1 33799862 33799862 G A PHC2 Silent p.T529T 0.46 TCGA-DD-A11C-01 1 43649280 43649280 G C WDR65 Missense_Mutation p.D165H 0.50 deleterious(0) probably_damaging(0.997) TCGA-DD-A11C-01 1 47685719 47685719 G A TAL1 Silent p.L223L 0.39 TCGA-DD-A11C-01 1 50513822 50513822 C T ELAVL4 5'UTR 0.44 TCGA-DD-A11C-01 1 89573964 89573964 C T GBP2 Missense_Mutation p.R557H 0.38 deleterious(0.02) possibly_damaging(0.553) TCGA-DD-A11C-01 20 13610722 13610722 T C TASP1 Missense_Mutation p.T2A 0.13 tolerated_low_confidence(0.07) benign(0.009) TCGA-DD-A11C-01 20 40714481 40714481 A G PTPRT Missense_Mutation p.Y1287H 0.28 deleterious(0.02) possibly_damaging(0.844) TCGA-DD-A11C-01 20 43108685 43108685 T G TTPAL Missense_Mutation p.S16A 0.54 tolerated_low_confidence(0.19) benign(0.01) TCGA-DD-A11C-01 21 38572587 38572587 G A TTC3 Missense_Mutation p.V1969M 0.42 tolerated(0.28) benign(0.065) TCGA-DD-A11C-01 21 45089836 45089836 C A RRP1B Missense_Mutation p.P68T 0.53 deleterious(0) possibly_damaging(0.907) TCGA-DD-A11C-01 2 160053178 160053178 C T TANC1 Silent p.H1013H 0.32 TCGA-DD-A11C-01 2 208865840 208865840 T C PLEKHM3 Missense_Mutation p.Q175R 0.55 tolerated(0.66) benign(0.002) TCGA-DD-A11C-01 2 234394614 234394614 G A USP40 Silent p.D1080D 1.00 TCGA-DD-A11C-01 2 238275926 238275926 T C COL6A3 Missense_Mutation p.K1635R 0.11 benign(0.141) TCGA-DD-A11C-01 2 241633929 241633929 G A AQP12A Silent p.L217L 0.75 TCGA-DD-A11C-01 2 56094351 56094351 C A EFEMP1 Missense_Mutation p.A447S 0.48 deleterious(0) benign(0.099) TCGA-DD-A11C-01 2 63282697 63282698 AG - OTX1 Frame_Shift_Del p.S105Pfs*35 0.29 TCGA-DD-A11C-01 2 79364369 79364369 T C REG1P RNA 0.11 TCGA-DD-A11C-01 2 84660559 84660559 C T SUCLG1 Missense_Mutation p.G197D 0.40 deleterious(0.02) benign(0.342) TCGA-DD-A11C-01 2 86075030 86075030 C T ST3GAL5 Missense_Mutation p.G206R 0.13 deleterious(0) probably_damaging(1) TCGA-DD-A11C-01 3 119087231 119087231 C G ARHGAP31 Silent p.G72G 0.66 TCGA-DD-A11C-01 3 128532270 128532270 G T RAB7A 3'UTR 0.61 TCGA-DD-A11C-01 3 13546250 13546250 T C HDAC11 3'UTR 0.15 TCGA-DD-A11C-01 3 159976324 159976324 A G IFT80 Silent p.L775L 0.62 TCGA-DD-A11C-01 3 18436227 18436227 A T SATB1 Silent p.P311P 0.58 TCGA-DD-A11C-01 3 196547330 196547330 G A PAK2 Silent p.V414V 0.28 TCGA-DD-A11C-01 3 49053385 49053385 T G DALRD3 Intron 0.20 TCGA-DD-A11C-01 3 50095360 50095360 G A RBM6 Silent p.R631R 0.66 TCGA-DD-A11C-01 3 50645109 50645109 C - CISH Frame_Shift_Del p.A253Pfs*165 0.51 TCGA-DD-A11C-01 4 15938165 15938165 G T FGFBP1 Missense_Mutation p.L31I 0.36 tolerated(0.24) benign(0.042) TCGA-DD-A11C-01 4 17710586 17710586 C A FAM184B Missense_Mutation p.D275Y 0.41 deleterious(0) probably_damaging(0.998) TCGA-DD-A11C-01 4 183675952 183675952 G C TENM3 Missense_Mutation p.A1478P 0.50 deleterious(0) benign(0.02) TCGA-DD-A11C-01 4 183959283 183959283 G A FAM92A1P2 RNA 0.29 TCGA-DD-A11C-01 4 44697656 44697656 A T GUF1 Missense_Mutation p.K580N 0.54 deleterious(0) probably_damaging(0.968) TCGA-DD-A11C-01 4 47939598 47939598 T C CNGA1 Missense_Mutation p.M374V 0.45 tolerated(0.11) possibly_damaging(0.661) TCGA-DD-A11C-01 4 52779748 52779748 T C DCUN1D4 Nonstop_Mutation p.*293Qext*82 0.16 TCGA-DD-A11C-01 5 10288612 10288612 T A CMBL Missense_Mutation p.Q82L 0.26 tolerated(0.21) benign(0.022) TCGA-DD-A11C-01 5 139189232 139189232 T C PSD2 Silent p.H69H 0.53 TCGA-DD-A11C-01 5 154346429 154346429 G A MRPL22 Missense_Mutation p.R198H 0.53 tolerated(0.06) probably_damaging(0.953) TCGA-DD-A11C-01 5 159656545 159656545 G T FABP6 Intron 0.51 TCGA-DD-A11C-01 5 167674101 167674101 A G TENM2 Missense_Mutation p.N2053D 0.39 tolerated(0.12) possibly_damaging(0.766) TCGA-DD-A11C-01 5 94275895 94275895 T C MCTP1 Missense_Mutation p.T356A 0.33 tolerated(0.14) benign(0.027) TCGA-DD-A11C-01 6 123825006 123825006 C A TRDN Missense_Mutation p.K217N 0.85 deleterious_low_confidence(0) unknown(0) TCGA-DD-A11C-01 6 138612924 138612924 G A KIAA1244 Silent p.S1034S 0.37 TCGA-DD-A11C-01 6 17640200 17640200 C G NUP153 Missense_Mutation p.G606R 0.31 deleterious(0.02) probably_damaging(1) TCGA-DD-A11C-01 6 29080221 29080221 C A OR2J3 Missense_Mutation p.P185Q 0.29 deleterious(0) probably_damaging(0.994) TCGA-DD-A11C-01 6 33178961 33178961 C T RING1 Missense_Mutation p.P161L 0.15 tolerated(0.31) benign(0.019) TCGA-DD-A11C-01 6 34498320 34498320 C T PACSIN1 Silent p.A331A 0.09 TCGA-DD-A11C-01 6 42975774 42975774 C T PPP2R5D Silent p.I276I 0.56 TCGA-DD-A11C-01 7 102100057 102100057 C A ALKBH4 Missense_Mutation p.R105S 0.52 deleterious(0) possibly_damaging(0.796) TCGA-DD-A11C-01 7 128494736 128494736 G C FLNC Missense_Mutation p.A2333P 0.15 deleterious(0) probably_damaging(0.965) TCGA-DD-A11C-01 7 21641022 21641022 A G DNAH11 Missense_Mutation p.E1145G 0.13 possibly_damaging(0.786) TCGA-DD-A11C-01 7 48467402 48467402 C T ABCA13 Missense_Mutation p.H4167Y 0.47 benign(0) TCGA-DD-A11C-01 7 5662625 5662625 T C RNF216 Missense_Mutation p.M880V 0.28 deleterious(0.03) benign(0.01) TCGA-DD-A11C-01 7 73246607 73246607 G T CLDN4 3'UTR 0.42 TCGA-DD-A11C-01 7 88966173 88966173 C T ZNF804B Missense_Mutation p.P1293S 0.51 deleterious(0) probably_damaging(1) TCGA-DD-A11C-01 7 97481701 97481701 C T ASNS Missense_Mutation p.R519H 0.42 deleterious(0.02) benign(0.046) TCGA-DD-A11C-01 8 101118126 101118126 C A RGS22 Silent p.A8A 0.60 TCGA-DD-A11C-01 8 48839897 48839897 C T PRKDC Missense_Mutation p.G759D 0.25 probably_damaging(0.997) TCGA-DD-A11C-01 8 65495590 65495591 - T BHLHE22 3'UTR 0.18 TCGA-DD-A11C-01 8 69021775 69021775 A T PREX2 Missense_Mutation p.E1021D 0.28 deleterious(0.03) benign(0.254) TCGA-DD-A11C-01 9 116372 116372 T - FOXD4 3'UTR 0.15 TCGA-DD-A11C-01 9 123792742 123792742 T C C5 Missense_Mutation p.I231V 0.48 tolerated(0.3) benign(0.007) TCGA-DD-A11C-01 9 39149891 39149891 C T CNTNAP3 Missense_Mutation p.D521N 0.21 tolerated(1) benign(0.009) TCGA-DD-A11C-01 9 43685152 43685152 G A CNTNAP3B 5'UTR 0.22 TCGA-DD-A11C-01 9 5920263 5920263 G T KIAA2026 Silent p.L1911L 0.57 TCGA-DD-A11C-01 X 110644298 110644298 G A DCX Nonsense_Mutation p.Q290* 0.09 TCGA-DD-A11D-01 10 11532861 11532861 A T USP6NL Missense_Mutation p.H188Q 0.41 deleterious(0.01) probably_damaging(0.952) TCGA-DD-A11D-01 10 12131171 12131171 C T DHTKD1 Missense_Mutation p.R302C 0.27 deleterious(0) probably_damaging(1) TCGA-DD-A11D-01 10 134021376 134021376 G C STK32C 3'UTR 0.53 TCGA-DD-A11D-01 10 38343322 38343322 C T ZNF33A Silent p.H90H 0.50 TCGA-DD-A11D-01 10 44052345 44052346 TG - ZNF239 Frame_Shift_Del p.R395Sfs*18 0.25 TCGA-DD-A11D-01 10 81273634 81273634 C T EIF5AL1 3'UTR 0.12 TCGA-DD-A11D-01 11 100998683 100998683 C T PGR Silent p.A373A 0.40 TCGA-DD-A11D-01 11 123516374 123516374 G A SCN3B Missense_Mutation p.S47F 0.39 deleterious(0) probably_damaging(0.963) TCGA-DD-A11D-01 11 123900577 123900577 T C OR10G8 Missense_Mutation p.L83S 0.36 deleterious(0) probably_damaging(0.912) TCGA-DD-A11D-01 11 44931287 44931287 T C TSPAN18 Missense_Mutation p.I32T 0.43 deleterious(0) benign(0.108) TCGA-DD-A11D-01 11 46726465 46726465 G T ZNF408 Silent p.G405G 0.14 TCGA-DD-A11D-01 11 47504291 47504291 C A CELF1 Nonsense_Mutation p.G241* 0.42 TCGA-DD-A11D-01 11 4903945 4903945 G T OR51T1 Missense_Mutation p.R299S 0.38 tolerated(0.22) benign(0.034) TCGA-DD-A11D-01 11 56127796 56127796 T C OR8J1 Missense_Mutation p.I25T 0.42 tolerated(0.27) benign(0.119) TCGA-DD-A11D-01 11 56143382 56143382 G T OR8U1 Missense_Mutation p.D95Y 0.50 tolerated(1) benign(0) TCGA-DD-A11D-01 11 62532653 62532653 G T POLR2G Splice_Site p.X95_splice 0.07 TCGA-DD-A11D-01 11 64520562 64520562 C A PYGM Missense_Mutation p.A501S 0.38 tolerated(0.64) probably_damaging(0.999) TCGA-DD-A11D-01 11 66082959 66082959 G C CD248 Missense_Mutation p.P514A 0.42 tolerated_low_confidence(0.07) benign(0.007) TCGA-DD-A11D-01 11 66264766 66264766 C T DPP3 Intron 0.29 TCGA-DD-A11D-01 11 67077236 67077236 C A SSH3 Intron 0.42 TCGA-DD-A11D-01 11 74617459 74617459 G T XRRA1 Silent p.I268I 0.45 TCGA-DD-A11D-01 11 7846818 7846818 G T OR5P3 Silent p.R234R 0.45 TCGA-DD-A11D-01 11 8947426 8947426 A G C11orf16 Missense_Mutation p.F263S 0.36 deleterious(0.03) benign(0.331) TCGA-DD-A11D-01 12 100728028 100728028 A G SCYL2 Missense_Mutation p.M616V 0.55 tolerated(0.37) benign(0.024) TCGA-DD-A11D-01 12 10766087 10766087 G A MAGOHB Silent p.H15H 0.46 TCGA-DD-A11D-01 12 130842075 130842075 A G PIWIL1 Missense_Mutation p.K548E 0.13 tolerated(0.17) benign(0.007) TCGA-DD-A11D-01 12 29649135 29649142 TGTGCTGC - OVCH1 Frame_Shift_Del p.A85Lfs*7 0.19 TCGA-DD-A11D-01 12 40921195 40921195 A G MUC19 Intron 0.27 TCGA-DD-A11D-01 13 47409332 47409332 G A HTR2A Silent p.S352S 0.32 TCGA-DD-A11D-01 13 61985316 61985316 T C PCDH20 3'UTR 0.35 TCGA-DD-A11D-01 14 45665463 45665463 G T FANCM Missense_Mutation p.R1810I 0.46 tolerated(0.12) benign(0.367) TCGA-DD-A11D-01 14 51107527 51107527 A T SAV1 Missense_Mutation p.N297K 0.32 deleterious(0) possibly_damaging(0.815) TCGA-DD-A11D-01 14 59112430 59112430 C G DACT1 Missense_Mutation p.N363K 0.39 deleterious(0.02) benign(0.02) TCGA-DD-A11D-01 14 62016558 62016558 G T PRKCH 3'UTR 0.49 TCGA-DD-A11D-01 14 76437499 76437499 C G TGFB3 Missense_Mutation p.D206H 0.23 tolerated(0.08) possibly_damaging(0.678) TCGA-DD-A11D-01 14 76662254 76662254 A G GPATCH2L Silent p.S409S 0.30 TCGA-DD-A11D-01 15 24921405 24921405 C A NPAP1 Missense_Mutation p.R131S 0.16 tolerated(0.67) benign(0.003) TCGA-DD-A11D-01 15 39545291 39545291 A G C15orf54 3'UTR 0.08 TCGA-DD-A11D-01 15 40565801 40565801 C A PAK6 Missense_Mutation p.P556H 0.28 deleterious(0) probably_damaging(1) TCGA-DD-A11D-01 16 15103555 15103555 G A PDXDC1 Silent p.E222E 0.21 TCGA-DD-A11D-01 16 27078698 27078698 G T C16orf82 RNA 0.43 TCGA-DD-A11D-01 16 31926035 31926035 T G ZNF267 Silent p.S155S 0.36 TCGA-DD-A11D-01 16 66613710 66613710 G T CMTM2 Missense_Mutation p.G67V 0.44 deleterious(0) probably_damaging(0.998) TCGA-DD-A11D-01 16 67572365 67572365 G A FAM65A Missense_Mutation p.V26M 0.47 deleterious(0.02) possibly_damaging(0.636) TCGA-DD-A11D-01 16 72110626 72110626 C T HPR Silent p.N231N 0.46 TCGA-DD-A11D-01 16 77228415 77228415 G A MON1B Missense_Mutation p.R220H 0.38 deleterious(0) probably_damaging(0.997) TCGA-DD-A11D-01 16 84124541 84124541 C T MBTPS1 Missense_Mutation p.E324K 0.43 deleterious(0) probably_damaging(1) TCGA-DD-A11D-01 17 28960380 28960380 A T LRRC37BP1 RNA 0.42 TCGA-DD-A11D-01 17 45479548 45479548 C T EFCAB13 Missense_Mutation p.R666C 0.43 tolerated(0.23) benign(0.006) TCGA-DD-A11D-01 17 45479563 45479563 T - EFCAB13 Frame_Shift_Del p.L671* 0.31 TCGA-DD-A11D-01 17 48551103 48551103 A G ACSF2 Missense_Mutation p.E518G 0.40 deleterious(0) probably_damaging(1) TCGA-DD-A11D-01 17 59560737 59560737 G A TBX4 Missense_Mutation p.G500R 0.36 tolerated_low_confidence(0.07) benign(0.037) TCGA-DD-A11D-01 17 63198195 63198195 A T RGS9 Missense_Mutation p.Y354F 0.27 tolerated(0.12) benign(0.29) TCGA-DD-A11D-01 17 79858055 79858055 A G ANAPC11 3'UTR 0.11 TCGA-DD-A11D-01 19 30934910 30934910 G C ZNF536 Silent p.L147L 0.23 TCGA-DD-A11D-01 19 40704415 40704415 G A MAP3K10 Silent p.P272P 0.33 TCGA-DD-A11D-01 19 46832675 46832675 G T HIF3A Missense_Mutation p.C551F 0.42 tolerated_low_confidence(0.07) benign(0.352) TCGA-DD-A11D-01 19 49631685 49631685 A G PPFIA3 Missense_Mutation p.E101G 0.42 deleterious(0) probably_damaging(0.998) TCGA-DD-A11D-01 19 52249027 52249027 A G FPR1 3'UTR 0.50 TCGA-DD-A11D-01 19 53611595 53611595 A T ZNF415 3'UTR 0.15 TCGA-DD-A11D-01 19 55823449 55823449 G A BRSK1 3'UTR 0.33 TCGA-DD-A11D-01 19 55823450 55823450 G A BRSK1 3'UTR 0.34 TCGA-DD-A11D-01 19 57987070 57987075 GGTACA - AC004076.9 In_Frame_Del p.L51_Y52del 0.41 TCGA-DD-A11D-01 19 58864542 58864542 A T A1BG Missense_Mutation p.L31Q 0.51 deleterious(0) probably_damaging(1) TCGA-DD-A11D-01 19 758698 758698 G T MISP Missense_Mutation p.Q584H 0.26 tolerated(0.1) benign(0.014) TCGA-DD-A11D-01 19 758699 758699 A G MISP Missense_Mutation p.N585D 0.26 tolerated(1) benign(0) TCGA-DD-A11D-01 19 8651042 8651042 C T ADAMTS10 Missense_Mutation p.R875K 0.37 tolerated(0.73) benign(0.004) TCGA-DD-A11D-01 19 9492041 9492041 G A ZNF177 Missense_Mutation p.C345Y 0.46 deleterious(0) probably_damaging(0.997) TCGA-DD-A11D-01 1 110171048 110171048 C T AMPD2 Silent p.S500S 0.09 TCGA-DD-A11D-01 1 111861754 111861754 C T CHIA Silent p.L310L 0.34 TCGA-DD-A11D-01 1 151314816 151314816 C A RFX5 Missense_Mutation p.S566I 0.07 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DD-A11D-01 1 167663459 167663459 T A RCSD1 Missense_Mutation p.S132T 0.28 tolerated(0.06) possibly_damaging(0.678) TCGA-DD-A11D-01 1 169388227 169388227 A C CCDC181 Intron 0.30 TCGA-DD-A11D-01 1 18152300 18152300 G C ACTL8 Silent p.L129L 0.46 TCGA-DD-A11D-01 1 203667458 203667481 CGCCCTGCTGGTGAAGAAAATGAA - ATP2B4 In_Frame_Del 0.16 TCGA-DD-A11D-01 1 247588697 247588697 C A NLRP3 Missense_Mutation p.P651H 0.32 tolerated(0.14) probably_damaging(0.99) TCGA-DD-A11D-01 1 248224574 248224574 A T OR2L3 Silent p.T197T 0.05 TCGA-DD-A11D-01 1 45977037 45977037 G A PRDX1 Silent p.V188V 0.41 TCGA-DD-A11D-01 1 62626722 62626722 C A INADL 3'UTR 0.24 TCGA-DD-A11D-01 1 8074176 8074182 GGCTTCA - ERRFI1 Frame_Shift_Del p.E160Sfs*13 0.47 TCGA-DD-A11D-01 1 90399468 90399468 G A LRRC8D Missense_Mutation p.G281R 0.33 deleterious(0.04) possibly_damaging(0.788) TCGA-DD-A11D-01 1 98186246 98186246 C G DPYD Intron 0.29 TCGA-DD-A11D-01 20 3146846 3146846 G A LZTS3 Missense_Mutation p.T207I 0.41 tolerated(0.12) probably_damaging(0.969) TCGA-DD-A11D-01 20 3147349 3147349 A G LZTS3 Splice_Site p.X153_splice 0.33 TCGA-DD-A11D-01 20 57829455 57829455 A C ZNF831 Missense_Mutation p.K1564T 0.34 tolerated(0.08) possibly_damaging(0.81) TCGA-DD-A11D-01 21 41725559 41725559 T C DSCAM Missense_Mutation p.Y256C 0.40 tolerated(0.08) probably_damaging(0.971) TCGA-DD-A11D-01 21 45937720 45937720 T A C21orf90 Splice_Site p.X14_splice 0.36 TCGA-DD-A11D-01 22 22842866 22842866 A G ZNF280B Silent p.S286S 0.28 TCGA-DD-A11D-01 22 35463259 35463259 C T ISX Missense_Mutation p.A60V 0.36 tolerated(0.07) benign(0.054) TCGA-DD-A11D-01 22 37414432 37414432 C A TST Missense_Mutation p.W114C 0.23 deleterious(0) probably_damaging(1) TCGA-DD-A11D-01 22 43528999 43528999 G C MCAT 3'UTR 0.51 TCGA-DD-A11D-01 22 50169282 50169282 C G BRD1 Missense_Mutation p.E984Q 0.27 deleterious(0.05) possibly_damaging(0.688) TCGA-DD-A11D-01 22 50655118 50655118 A G SELO Splice_Site p.X501_splice 0.08 TCGA-DD-A11D-01 2 121740293 121740293 T C GLI2 Missense_Mutation p.F507S 0.39 deleterious(0) probably_damaging(0.999) TCGA-DD-A11D-01 2 144903285 144903285 C A GTDC1 Silent p.V67V 0.29 TCGA-DD-A11D-01 2 171715379 171715379 T A GAD1 Silent p.P529P 0.39 TCGA-DD-A11D-01 2 179434262 179434262 G T TTN Missense_Mutation p.P25533T 0.37 TCGA-DD-A11D-01 2 215815649 215815649 T C ABCA12 Missense_Mutation p.K2269R 0.10 tolerated(0.42) benign(0.005) TCGA-DD-A11D-01 2 216930060 216930060 C G PECR Silent p.T133T 0.44 TCGA-DD-A11D-01 2 225721666 225721666 G C DOCK10 Missense_Mutation p.D573E 0.38 deleterious(0.01) possibly_damaging(0.529) TCGA-DD-A11D-01 2 227892673 227892673 A T COL4A4 Silent p.P1342P 0.53 TCGA-DD-A11D-01 2 242289532 242289532 G A SEPT2 Missense_Mutation p.M343I 0.21 deleterious(0.04) unknown(0) TCGA-DD-A11D-01 2 32475575 32475575 C T NLRC4 Missense_Mutation p.R453Q 0.35 deleterious(0.02) probably_damaging(0.97) TCGA-DD-A11D-01 2 44073332 44073332 G T ABCG8 Silent p.L68L 0.39 TCGA-DD-A11D-01 2 61389694 61389694 A G C2orf74 Silent p.L22L 0.45 TCGA-DD-A11D-01 2 74757336 74757336 C G HTRA2 Missense_Mutation p.P68R 0.40 deleterious_low_confidence(0.02) benign(0.031) TCGA-DD-A11D-01 3 126708420 126708420 G A PLXNA1 Silent p.L328L 0.34 TCGA-DD-A11D-01 3 133099005 133099005 C T TMEM108 Silent p.T150T 0.49 TCGA-DD-A11D-01 3 140178531 140178531 T C CLSTN2 Missense_Mutation p.I381T 0.45 deleterious(0) possibly_damaging(0.649) TCGA-DD-A11D-01 3 183976322 183976322 G T ECE2 Intron 0.33 TCGA-DD-A11D-01 3 48465123 48465123 C - PLXNB1 Frame_Shift_Del p.A300Lfs*106 0.32 TCGA-DD-A11D-01 3 48465124 48465124 C A PLXNB1 Silent p.S299S 0.35 TCGA-DD-A11D-01 3 48465125 48465125 G A PLXNB1 Missense_Mutation p.S299L 0.37 deleterious(0.04) probably_damaging(0.939) TCGA-DD-A11D-01 3 48731544 48731544 C - IP6K2 Intron 0.32 TCGA-DD-A11D-01 3 49738946 49738946 G T RNF123 Missense_Mutation p.V434F 0.48 tolerated(0.68) benign(0.396) TCGA-DD-A11D-01 3 52394057 52394057 G - DNAH1 Frame_Shift_Del p.V1512Sfs*3 0.14 TCGA-DD-A11D-01 4 108816607 108816607 A G SGMS2 5'UTR 0.11 TCGA-DD-A11D-01 4 155156800 155156800 A C DCHS2 Missense_Mutation p.F2547V 0.39 tolerated(0.11) benign(0.01) TCGA-DD-A11D-01 4 168155405 168155405 A T SPOCK3 Intron 0.57 TCGA-DD-A11D-01 4 189026083 189026083 A G TRIML2 Silent p.L15L 0.27 TCGA-DD-A11D-01 4 30723824 30723824 G T PCDH7 Silent p.L260L 0.60 TCGA-DD-A11D-01 4 3209019 3209019 C AG HTT Frame_Shift_Ins p.Q2030Afs*43 0.27 TCGA-DD-A11D-01 4 55598063 55598063 C T KIT Missense_Mutation p.P754S 0.37 tolerated(1) benign(0.003) TCGA-DD-A11D-01 4 88293884 88293884 C A HSD17B11 Silent p.S178S 0.45 TCGA-DD-A11D-01 5 108203627 108203627 T C FER Missense_Mutation p.M214T 0.53 deleterious(0) probably_damaging(0.972) TCGA-DD-A11D-01 5 140167846 140167846 G A PCDHA1 Silent p.P657P 0.63 TCGA-DD-A11D-01 5 140209428 140209428 A T PCDHA6 Silent p.S584S 0.05 TCGA-DD-A11D-01 5 176308382 176308382 T C HK3 Missense_Mutation p.K850E 0.25 deleterious(0) probably_damaging(0.992) TCGA-DD-A11D-01 5 71491564 71491564 T A MAP1B Silent p.A794A 0.54 TCGA-DD-A11D-01 5 71494133 71494133 C A MAP1B Missense_Mutation p.Q1651K 0.26 possibly_damaging(0.527) TCGA-DD-A11D-01 5 72866457 72866457 G T UTP15 Missense_Mutation p.E198D 0.28 tolerated(0.43) benign(0) TCGA-DD-A11D-01 5 80548514 80548514 C A CKMT2 Missense_Mutation p.S51R 0.72 tolerated(0.12) possibly_damaging(0.774) TCGA-DD-A11D-01 5 98115463 98115463 C G RGMB Missense_Mutation p.H147D 0.58 deleterious(0) probably_damaging(0.999) TCGA-DD-A11D-01 5 98129453 98129453 T A RGMB Nonsense_Mutation p.L478* 0.55 TCGA-DD-A11D-01 6 102516324 102516324 G A GRIK2 Missense_Mutation p.E889K 0.08 tolerated_low_confidence(0.05) benign(0.103) TCGA-DD-A11D-01 6 137323493 137323493 C G IL20RA Splice_Site p.X289_splice 0.14 TCGA-DD-A11D-01 6 138734131 138734131 C T HEBP2 Silent p.G178G 0.25 TCGA-DD-A11D-01 6 160196246 160196246 G C ACAT2 Missense_Mutation p.D179H 0.61 deleterious(0) probably_damaging(0.999) TCGA-DD-A11D-01 6 167366035 167366035 C T RNASET2 Missense_Mutation p.D30N 0.13 tolerated(0.53) benign(0.004) TCGA-DD-A11D-01 6 17828535 17828535 G C KIF13A Missense_Mutation p.Q490E 0.28 tolerated(1) benign(0) TCGA-DD-A11D-01 6 20151445 20151445 C A MBOAT1 Missense_Mutation p.M98I 0.44 tolerated(0.31) benign(0.025) TCGA-DD-A11D-01 6 21596505 21596505 A G SOX4 3'UTR 0.36 TCGA-DD-A11D-01 6 348816 348816 T A DUSP22 Missense_Mutation p.D161E 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-DD-A11D-01 6 35762977 35762977 G A CLPS Silent p.S95S 0.22 TCGA-DD-A11D-01 6 38650599 38650599 C G GLO1 Missense_Mutation p.D121H 0.12 deleterious(0) probably_damaging(0.953) TCGA-DD-A11D-01 6 38650627 38650627 C T GLO1 Silent p.E111E 0.10 TCGA-DD-A11D-01 6 38738285 38738285 G A DNAH8 Missense_Mutation p.E355K 0.11 probably_damaging(0.996) TCGA-DD-A11D-01 6 41051832 41051832 C G NFYA Missense_Mutation p.I70M 0.39 deleterious_low_confidence(0) unknown(0) TCGA-DD-A11D-01 6 42619803 42619803 G C UBR2 Missense_Mutation p.D870H 0.07 deleterious(0.01) benign(0.014) TCGA-DD-A11D-01 6 72003250 72003250 C G OGFRL1 Missense_Mutation p.I112M 0.08 tolerated(0.12) possibly_damaging(0.835) TCGA-DD-A11D-01 6 99283990 99283990 C T POU3F2 Missense_Mutation p.P414L 0.50 tolerated(0.06) probably_damaging(0.968) TCGA-DD-A11D-01 7 1026794 1026794 C A CYP2W1 Missense_Mutation p.L291M 0.42 tolerated(0.16) possibly_damaging(0.9) TCGA-DD-A11D-01 7 12414712 12414712 C A VWDE Missense_Mutation p.R389I 0.50 deleterious(0.01) benign(0.017) TCGA-DD-A11D-01 7 1539152 1539152 C A INTS1 Silent p.L267L 0.69 TCGA-DD-A11D-01 7 20199316 20199316 C A MACC1 Missense_Mutation p.G223V 0.29 deleterious(0) probably_damaging(1) TCGA-DD-A11D-01 7 26904118 26904118 C T SKAP2 5'UTR 0.64 TCGA-DD-A11D-01 7 29519792 29519792 G A CHN2 Intron 0.28 TCGA-DD-A11D-01 7 34097695 34097695 A T BMPER Missense_Mutation p.N318Y 0.29 deleterious(0.02) possibly_damaging(0.905) TCGA-DD-A11D-01 7 6624765 6624765 T G ZDHHC4 Silent p.A205A 0.51 TCGA-DD-A11D-01 7 93516721 93516721 T C TFPI2 Silent p.P161P 0.60 TCGA-DD-A11D-01 8 110454292 110454292 A G PKHD1L1 Missense_Mutation p.T1421A 0.37 tolerated(0.08) benign(0.114) TCGA-DD-A11D-01 8 27319033 27319033 T C CHRNA2 3'UTR 0.41 TCGA-DD-A11D-01 8 3565967 3565967 G - CSMD1 Frame_Shift_Del p.S327Afs*11 0.32 TCGA-DD-A11D-01 8 39644537 39644537 G T ADAM2 Missense_Mutation p.Q283K 0.35 tolerated(0.41) benign(0.014) TCGA-DD-A11D-01 8 41559138 41559138 T C ANK1 Silent p.L830L 0.37 TCGA-DD-A11D-01 9 111899753 111899753 T C FRRS1L Silent p.L339L 0.39 TCGA-DD-A11D-01 9 114213731 114213731 T C KIAA0368 Missense_Mutation p.S221G 0.39 deleterious(0) probably_damaging(1) TCGA-DD-A11D-01 9 139651621 139651621 C A LCN8 Splice_Site p.X9_splice 0.37 TCGA-DD-A11D-01 9 140991060 140991060 C A CACNA1B Missense_Mutation p.A1740E 0.08 deleterious(0) possibly_damaging(0.9) TCGA-DD-A11D-01 9 87570246 87570246 G T NTRK2 Silent p.T662T 0.39 TCGA-DD-A11D-01 X 100881476 100881479 AAGA - ARMCX3 3'UTR 0.22 TCGA-DD-A11D-01 X 107977031 107977031 G T IRS4 Missense_Mutation p.N848K 0.32 tolerated(0.14) unknown(0) TCGA-DD-A11D-01 X 122616686 122616686 G A GRIA3 Missense_Mutation p.G826S 0.44 deleterious(0) probably_damaging(1) TCGA-DD-A11D-01 X 135080330 135080330 T A SLC9A6 Missense_Mutation p.Y197N 0.37 deleterious(0) possibly_damaging(0.791) TCGA-DD-A11D-01 X 140993822 140993822 T C MAGEC1 Missense_Mutation p.L211S 0.14 tolerated_low_confidence(0.07) unknown(0) TCGA-DD-A11D-01 X 149945863 149945863 A G CD99L2 Intron 0.38 TCGA-DD-A11D-01 X 150840760 150840760 A T PASD1 Missense_Mutation p.M515L 0.31 tolerated_low_confidence(0.86) benign(0.018) TCGA-DD-A11D-01 X 151424438 151424438 T A GABRA3 Silent p.T121T 0.09 TCGA-DD-A11D-01 X 29973331 29973331 A T IL1RAPL1 Missense_Mutation p.R495S 0.38 tolerated(0.13) probably_damaging(0.99) TCGA-DD-A11D-01 X 37545177 37545177 C A XK 5'UTR 0.50 TCGA-DD-A11D-01 X 69249366 69249366 A T EDA Missense_Mutation p.K240I 0.38 deleterious_low_confidence(0) possibly_damaging(0.621) TCGA-DD-A11D-01 X 71855112 71855112 T C PHKA1 Missense_Mutation p.N536S 0.40 tolerated(0.14) benign(0.149) TCGA-DD-A11D-01 X 77243771 77243771 T A ATP7A Missense_Mutation p.Y52N 0.28 deleterious(0) probably_damaging(0.958) TCGA-DD-A1E9-01 10 129901194 129901194 G A MKI67 Silent p.P2970P 0.27 TCGA-DD-A1E9-01 10 34601219 34601219 A T PARD3 Intron 0.31 TCGA-DD-A1E9-01 10 5005692 5005692 T G AKR1C1 Missense_Mutation p.L19R 0.09 deleterious(0) probably_damaging(0.995) TCGA-DD-A1E9-01 11 128426289 128426289 G C ETS1 Missense_Mutation p.N37K 0.21 tolerated_low_confidence(0.1) benign(0) TCGA-DD-A1E9-01 11 2869140 2869140 C T KCNQ1 Silent p.G646G 0.22 TCGA-DD-A1E9-01 11 67077797 67077797 G T SSH3 Missense_Mutation p.S557I 0.20 deleterious_low_confidence(0.03) benign(0.169) TCGA-DD-A1E9-01 11 92534030 92534030 C T FAT3 Silent p.H2617H 0.17 TCGA-DD-A1E9-01 11 92613908 92613908 A T FAT3 Missense_Mutation p.T4047S 0.18 benign(0.001) TCGA-DD-A1E9-01 11 96074699 96074699 T C MAML2 Missense_Mutation p.T121A 0.14 benign(0.002) TCGA-DD-A1E9-01 12 45270410 45270410 T C NELL2 Silent p.R33R 0.09 TCGA-DD-A1E9-01 12 4554706 4554706 T C FGF6 Missense_Mutation p.M11V 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.824) TCGA-DD-A1E9-01 12 52448249 52448249 C T NR4A1 Missense_Mutation p.A59V 0.12 tolerated(0.08) benign(0) TCGA-DD-A1E9-01 12 52699951 52699951 C A KRT86 Silent p.A378A 0.23 TCGA-DD-A1E9-01 12 6974387 6974387 G A USP5 Missense_Mutation p.V820I 0.11 deleterious(0.04) possibly_damaging(0.787) TCGA-DD-A1E9-01 12 9344850 9344850 G T PZP Silent p.I495I 0.08 TCGA-DD-A1E9-01 13 36424827 36424827 C A DCLK1 Intron 0.25 TCGA-DD-A1E9-01 13 53617269 53617269 G A OLFM4 Silent p.K200K 0.10 TCGA-DD-A1E9-01 14 23793427 23793427 C T PABPN1 Silent p.T270T 0.10 TCGA-DD-A1E9-01 14 94848963 94848964 TG - SERPINA1 Frame_Shift_Del p.T204Sfs*11 0.13 TCGA-DD-A1E9-01 15 43237492 43237492 C T UBR1 3'UTR 0.20 TCGA-DD-A1E9-01 15 59455465 59455465 C T MYO1E Missense_Mutation p.E840K 0.08 deleterious(0.03) benign(0.16) TCGA-DD-A1E9-01 15 83491939 83491939 A G WHAMM Missense_Mutation p.D453G 0.18 tolerated(0.44) benign(0.001) TCGA-DD-A1E9-01 15 90189142 90189142 C T KIF7 Missense_Mutation p.R635Q 0.14 tolerated(0.24) benign(0.002) TCGA-DD-A1E9-01 16 19310149 19310149 C T CLEC19A Silent p.A81A 0.27 TCGA-DD-A1E9-01 16 3634828 3634828 T C SLX4 Missense_Mutation p.T1561A 0.16 deleterious(0) possibly_damaging(0.872) TCGA-DD-A1E9-01 16 50134209 50134209 A C HEATR3 Missense_Mutation p.R556S 0.11 deleterious(0) probably_damaging(0.991) TCGA-DD-A1E9-01 16 55807490 55807490 C A CES1P1 RNA 0.12 TCGA-DD-A1E9-01 17 1564062 1564062 C A PRPF8 Missense_Mutation p.R1523L 0.17 deleterious(0) probably_damaging(0.982) TCGA-DD-A1E9-01 18 29450417 29450417 A G TRAPPC8 Missense_Mutation p.L769P 0.10 deleterious(0) probably_damaging(0.992) TCGA-DD-A1E9-01 19 33233749 33233749 A G TDRD12 Missense_Mutation p.Y128C 0.20 deleterious(0) probably_damaging(0.954) TCGA-DD-A1E9-01 19 41600227 41600227 T C CYP2A13 Missense_Mutation p.Y351H 0.15 deleterious(0) probably_damaging(0.995) TCGA-DD-A1E9-01 19 41950189 41950189 A G C19orf69 3'UTR 0.13 TCGA-DD-A1E9-01 19 50302171 50302171 C T AP2A1 Silent p.I309I 0.19 TCGA-DD-A1E9-01 19 50302173 50302173 T G AP2A1 Missense_Mutation p.L310R 0.17 deleterious(0) probably_damaging(1) TCGA-DD-A1E9-01 19 51361569 51361569 A G KLK3 Missense_Mutation p.E164G 0.14 tolerated(0.36) benign(0.004) TCGA-DD-A1E9-01 19 51410092 51410092 C T KLK4 3'UTR 0.13 TCGA-DD-A1E9-01 1 100672083 100672083 C T DBT Missense_Mutation p.R376H 0.26 deleterious(0) probably_damaging(0.981) TCGA-DD-A1E9-01 1 145116188 145116188 T C SEC22B RNA 0.25 TCGA-DD-A1E9-01 1 150531572 150531572 T C ADAMTSL4 Silent p.P898P 0.50 TCGA-DD-A1E9-01 1 152185637 152185637 C A HRNR Missense_Mutation p.S2823I 0.09 unknown(0) TCGA-DD-A1E9-01 1 155289686 155289686 A G FDPS Silent p.Q342Q 0.58 TCGA-DD-A1E9-01 1 160769681 160769681 C A LY9 Missense_Mutation p.A88D 0.06 deleterious(0) probably_damaging(0.972) TCGA-DD-A1E9-01 1 173825830 173825830 G A DARS2 Silent p.L567L 0.08 TCGA-DD-A1E9-01 1 204586941 204586941 T C LRRN2 3'UTR 0.21 TCGA-DD-A1E9-01 1 205290713 205290713 G A NUAK2 Missense_Mutation p.S15L 0.25 tolerated_low_confidence(0.19) benign(0.001) TCGA-DD-A1E9-01 1 226895573 226895573 T C ITPKB Intron 0.07 TCGA-DD-A1E9-01 1 232597940 232597940 G A SIPA1L2 Intron 0.06 TCGA-DD-A1E9-01 1 237893654 237893654 G A RYR2 Missense_Mutation p.A3645T 0.12 benign(0.284) TCGA-DD-A1E9-01 1 3548777 3548777 C T WRAP73 Missense_Mutation p.D350N 0.16 deleterious(0) benign(0.298) TCGA-DD-A1E9-01 1 94652058 94652058 T G ARHGAP29 Missense_Mutation p.T593P 0.13 tolerated(0.28) benign(0.04) TCGA-DD-A1E9-01 20 2443295 2443295 G C SNRPB Silent p.P224P 0.10 TCGA-DD-A1E9-01 20 25287496 25287496 C G ABHD12 Missense_Mutation p.S308T 0.13 tolerated(0.15) benign(0.079) TCGA-DD-A1E9-01 20 44181869 44181869 C T WFDC8 Silent p.E164E 0.10 TCGA-DD-A1E9-01 21 45506772 45506772 A T TRAPPC10 Missense_Mutation p.S824C 0.11 deleterious(0.01) probably_damaging(0.976) TCGA-DD-A1E9-01 22 36164375 36164375 C T RBFOX2 Missense_Mutation p.E229K 0.09 possibly_damaging(0.829) TCGA-DD-A1E9-01 22 42042966 42042966 T A XRCC6 Silent p.A280A 0.29 TCGA-DD-A1E9-01 2 107049725 107049725 T A RGPD3 Missense_Mutation p.E741V 0.03 deleterious(0) benign(0.344) TCGA-DD-A1E9-01 2 128247508 128247508 T A IWS1 Missense_Mutation p.R687W 0.13 deleterious(0) probably_damaging(1) TCGA-DD-A1E9-01 2 160194151 160194151 C G BAZ2B Missense_Mutation p.E1863Q 0.16 benign(0.333) TCGA-DD-A1E9-01 2 219501200 219501200 G A PLCD4 Missense_Mutation p.R730H 0.27 deleterious(0) probably_damaging(1) TCGA-DD-A1E9-01 2 47707967 47707993 ATATCATGGAACCAGCAGCAAAGAAGT - MSH2 In_Frame_Del p.D864_C873delinsG 0.20 TCGA-DD-A1E9-01 2 64863033 64863033 G A SERTAD2 3'UTR 0.12 TCGA-DD-A1E9-01 2 74683301 74683301 G A INO80B Missense_Mutation p.E148K 0.08 deleterious(0) possibly_damaging(0.525) TCGA-DD-A1E9-01 2 86691306 86691306 C T KDM3A Missense_Mutation p.S325F 0.30 deleterious_low_confidence(0) benign(0.203) TCGA-DD-A1E9-01 3 129286593 129286593 C A PLXND1 Silent p.T1307T 0.14 TCGA-DD-A1E9-01 3 130447469 130447469 C G PIK3R4 Missense_Mutation p.E549Q 0.12 tolerated(0.75) possibly_damaging(0.488) TCGA-DD-A1E9-01 3 1371498 1371498 G A CNTN6 Missense_Mutation p.V415I 0.25 tolerated(0.17) benign(0.003) TCGA-DD-A1E9-01 4 115597188 115597188 C T UGT8 Missense_Mutation p.A457V 0.27 deleterious(0) probably_damaging(1) TCGA-DD-A1E9-01 4 144107245 144107245 G A USP38 Silent p.L214L 0.27 TCGA-DD-A1E9-01 4 149357349 149357349 T A NR3C2 Missense_Mutation p.S222C 0.19 tolerated_low_confidence(0.32) benign(0.012) TCGA-DD-A1E9-01 4 183063609 183063609 A G AC108142.1 RNA 0.13 TCGA-DD-A1E9-01 4 74283866 74283866 T A ALB Missense_Mutation p.V497D 0.20 deleterious(0) probably_damaging(1) TCGA-DD-A1E9-01 5 120021723 120021723 C A PRR16 Missense_Mutation p.D55E 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DD-A1E9-01 5 139876827 139876827 C T ANKHD1 Nonsense_Mutation p.Q990* 0.28 TCGA-DD-A1E9-01 5 72201255 72201255 G A TNPO1 3'UTR 0.35 TCGA-DD-A1E9-01 6 13365402 13365402 A G GFOD1 Missense_Mutation p.V249A 0.26 deleterious(0) benign(0.26) TCGA-DD-A1E9-01 6 13978158 13978158 A G RNF182 3'UTR 0.24 TCGA-DD-A1E9-01 6 154727467 154727467 G A CNKSR3 3'UTR 0.27 TCGA-DD-A1E9-01 6 24714631 24714631 A C C6orf62 Missense_Mutation p.L115R 0.21 deleterious(0) probably_damaging(0.999) TCGA-DD-A1E9-01 6 40400289 40400289 G A LRFN2 Silent p.I188I 0.20 TCGA-DD-A1E9-01 7 149504027 149504027 G T SSPO RNA 0.09 TCGA-DD-A1E9-01 7 151262925 151262925 T C PRKAG2 Missense_Mutation p.E427G 0.36 deleterious(0.01) benign(0.313) TCGA-DD-A1E9-01 7 51095517 51095517 C T COBL Silent p.K1092K 0.34 TCGA-DD-A1E9-01 7 7571282 7571282 T A COL28A1 Missense_Mutation p.L126F 0.34 tolerated(0.92) benign(0.036) TCGA-DD-A1E9-01 7 82595462 82595462 G A PCLO Silent p.L1214L 0.38 TCGA-DD-A1E9-01 7 99030913 99030913 G C ATP5J2-PTCD1 Missense_Mutation p.N243K 0.41 tolerated(0.5) benign(0) TCGA-DD-A1E9-01 8 103269936 103269936 G A UBR5 Missense_Mutation p.A2704V 0.08 deleterious(0.03) probably_damaging(0.977) TCGA-DD-A1E9-01 8 122641077 122641077 C T HAS2 Silent p.S168S 0.56 TCGA-DD-A1E9-01 8 125551301 125551301 G T TATDN1 5'UTR 0.51 TCGA-DD-A1E9-01 8 86572554 86572554 T C REXO1L1P 3'UTR 0.55 TCGA-DD-A1E9-01 9 139917374 139917374 G A ABCA2 Intron 0.22 TCGA-DD-A1E9-01 X 119394632 119394632 A G TMEM255A 3'UTR 0.11 TCGA-DD-A1E9-01 X 135049605 135049605 T G MMGT1 Silent p.I60I 0.47 TCGA-DD-A1E9-01 X 135049612 135049612 T C MMGT1 Missense_Mutation p.Y58C 0.47 deleterious(0.03) probably_damaging(0.999) TCGA-DD-A1E9-01 X 99662112 99662112 G A PCDH19 Missense_Mutation p.S495L 0.45 deleterious(0.01) probably_damaging(0.964) TCGA-DD-A1EB-01 10 102505938 102505938 T G PAX2 5'UTR 0.57 TCGA-DD-A1EB-01 10 106075119 106075119 G A ITPRIP Missense_Mutation p.R231C 0.53 deleterious(0.05) benign(0.368) TCGA-DD-A1EB-01 10 106075611 106075611 C G ITPRIP Missense_Mutation p.E67Q 0.34 deleterious(0.04) benign(0.021) TCGA-DD-A1EB-01 10 112572213 112572213 A C RBM20 Missense_Mutation p.E686D 0.16 tolerated(0.1) benign(0.015) TCGA-DD-A1EB-01 10 114046139 114046139 A G TECTB Missense_Mutation p.N158S 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-DD-A1EB-01 10 123846536 123846536 G T TACC2 Silent p.R1507R 0.32 TCGA-DD-A1EB-01 10 67829142 67829142 C A CTNNA3 Missense_Mutation p.D695Y 0.40 deleterious(0) unknown(0) TCGA-DD-A1EB-01 10 95719360 95719360 C T PIPSL RNA 0.43 TCGA-DD-A1EB-01 11 103870889 103870889 G A PDGFD Silent p.Y73Y 0.38 TCGA-DD-A1EB-01 11 120827654 120827654 T C GRIK4 Silent p.S622S 0.57 TCGA-DD-A1EB-01 11 133714431 133714431 G T SPATA19 Silent p.G80G 0.42 TCGA-DD-A1EB-01 11 18638422 18638422 C G SPTY2D1 Missense_Mutation p.A59P 0.41 tolerated(0.07) possibly_damaging(0.665) TCGA-DD-A1EB-01 11 57983007 57983007 T A OR1S1 Missense_Mutation p.F264Y 0.43 tolerated(0.12) probably_damaging(0.996) TCGA-DD-A1EB-01 11 58979138 58979139 - G MPEG1 Frame_Shift_Ins p.E401Rfs*9 0.29 TCGA-DD-A1EB-01 11 61249803 61249803 C T PPP1R32 Missense_Mutation p.R44C 0.31 deleterious(0.01) benign(0.081) TCGA-DD-A1EB-01 11 62407128 62407128 A G GANAB Silent p.F38F 0.44 TCGA-DD-A1EB-01 11 65479799 65479799 A G KAT5 Missense_Mutation p.R21G 0.33 tolerated_low_confidence(0.07) benign(0) TCGA-DD-A1EB-01 11 66975117 66975117 T A KDM2A Missense_Mutation p.F148L 0.40 deleterious(0) probably_damaging(0.995) TCGA-DD-A1EB-01 11 66986855 66986855 A G KDM2A Missense_Mutation p.N313S 0.41 tolerated(0.64) benign(0.001) TCGA-DD-A1EB-01 11 70336302 70336302 G C SHANK2 Intron 0.46 TCGA-DD-A1EB-01 12 108051543 108051543 C A BTBD11 3'UTR 0.36 TCGA-DD-A1EB-01 12 120741415 120741415 C T SIRT4 Silent p.I17I 0.31 TCGA-DD-A1EB-01 12 121416711 121416714 GGGA - HNF1A Frame_Shift_Del p.E48Pfs*106 0.49 TCGA-DD-A1EB-01 12 121432014 121432014 T A HNF1A Missense_Mutation p.L254Q 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-DD-A1EB-01 12 13720174 13720174 G A GRIN2B Missense_Mutation p.L795F 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-DD-A1EB-01 12 24989464 24989464 A G BCAT1 Missense_Mutation p.L307P 0.39 deleterious(0) probably_damaging(0.996) TCGA-DD-A1EB-01 12 48134656 48134656 G T RAPGEF3 Intron 0.32 TCGA-DD-A1EB-01 12 50724480 50724480 T A FAM186A Missense_Mutation p.I2304L 0.38 deleterious(0.01) probably_damaging(0.993) TCGA-DD-A1EB-01 12 56347562 56347562 C G DGKA 3'UTR 0.46 TCGA-DD-A1EB-01 12 70970186 70970186 G T PTPRB Missense_Mutation p.H940N 0.35 deleterious(0.05) benign(0.274) TCGA-DD-A1EB-01 12 80761993 80761993 A G OTOGL Silent p.V2164V 0.37 TCGA-DD-A1EB-01 12 86374008 86374008 C A MGAT4C Missense_Mutation p.A166S 0.43 tolerated(0.55) benign(0.034) TCGA-DD-A1EB-01 12 88486497 88486497 A G CEP290 Missense_Mutation p.L1141S 0.40 probably_damaging(0.938) TCGA-DD-A1EB-01 12 94542869 94542869 G T PLXNC1 Missense_Mutation p.R41L 0.50 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-DD-A1EB-01 13 109540788 109540788 G T MYO16 Missense_Mutation p.G519V 0.40 tolerated(0.1) benign(0.082) TCGA-DD-A1EB-01 13 25672474 25672474 A T PABPC3 3'UTR 0.46 TCGA-DD-A1EB-01 13 35672500 35672500 G T NBEA Silent p.L546L 0.38 TCGA-DD-A1EB-01 13 37678916 37678916 A T CSNK1A1L Missense_Mutation p.L160M 0.45 deleterious_low_confidence(0) probably_damaging(1) TCGA-DD-A1EB-01 13 53254291 53254291 G T SUGT1 Splice_Site p.X332_splice 0.33 TCGA-DD-A1EB-01 13 76055603 76055603 C T TBC1D4 Missense_Mutation p.A101T 0.47 tolerated(0.54) benign(0.002) TCGA-DD-A1EB-01 14 102467528 102467528 G A DYNC1H1 Missense_Mutation p.R1411H 0.35 probably_damaging(1) TCGA-DD-A1EB-01 14 105418058 105418058 C G AHNAK2 Missense_Mutation p.G1244R 0.89 benign(0.032) TCGA-DD-A1EB-01 14 20344661 20344661 C A OR4K2 Missense_Mutation p.P79T 0.29 deleterious(0) probably_damaging(1) TCGA-DD-A1EB-01 14 20404418 20404418 T G OR4K1 Missense_Mutation p.M198R 0.26 deleterious(0.01) possibly_damaging(0.511) TCGA-DD-A1EB-01 14 23897841 23897841 G A MYH7 Silent p.N482N 0.05 TCGA-DD-A1EB-01 14 28734390 28734390 C T BNIP3P1 RNA 0.31 TCGA-DD-A1EB-01 14 52535526 52535526 T A NID2 Missense_Mutation p.N63Y 0.31 tolerated(0.08) benign(0.044) TCGA-DD-A1EB-01 14 60074128 60074128 G T RTN1 Silent p.T616T 0.40 TCGA-DD-A1EB-01 14 60097163 60097163 C A RTN1 Intron 0.32 TCGA-DD-A1EB-01 14 74824462 74824463 - G VRTN Frame_Shift_Ins p.V329Rfs*25 0.33 TCGA-DD-A1EB-01 14 77751296 77751296 T A POMT2 Nonsense_Mutation p.K525* 0.39 TCGA-DD-A1EB-01 15 23889987 23889987 C A MAGEL2 Missense_Mutation p.S365I 0.40 deleterious(0.01) possibly_damaging(0.641) TCGA-DD-A1EB-01 15 23932414 23932414 A G NDN 5'UTR 0.32 TCGA-DD-A1EB-01 15 37329148 37329148 T A MEIS2 Missense_Mutation p.D256V 0.47 deleterious(0.03) probably_damaging(0.957) TCGA-DD-A1EB-01 15 42059127 42059127 G A MGA Silent p.K2949K 0.32 TCGA-DD-A1EB-01 15 48780612 48780612 C T FBN1 Missense_Mutation p.R1054K 0.41 benign(0.02) TCGA-DD-A1EB-01 15 65426109 65426109 G A PDCD7 Missense_Mutation p.P4L 0.40 deleterious_low_confidence(0.01) unknown(0) TCGA-DD-A1EB-01 15 78454584 78454584 T C IDH3A Silent p.D162D 0.61 TCGA-DD-A1EB-01 15 86685286 86685286 C G AGBL1 5'UTR 0.44 TCGA-DD-A1EB-01 16 1420138 1420138 G A UNKL Silent p.S523S 0.41 TCGA-DD-A1EB-01 16 21328280 21328280 A G CRYM-AS1 RNA 0.32 TCGA-DD-A1EB-01 16 28112968 28112968 C A XPO6 Silent p.V1029V 0.41 TCGA-DD-A1EB-01 16 30750324 30750324 C T SRCAP Missense_Mutation p.T2988I 0.37 unknown(0) TCGA-DD-A1EB-01 16 3433548 3433548 T G ZSCAN32 Missense_Mutation p.R254S 0.39 tolerated(0.29) benign(0.354) TCGA-DD-A1EB-01 16 70190496 70190496 G T PDPR Missense_Mutation p.W785L 0.14 tolerated(0.07) probably_damaging(0.957) TCGA-DD-A1EB-01 16 88497694 88497695 AC - ZNF469 Frame_Shift_Del p.H1245* 0.59 TCGA-DD-A1EB-01 16 89960138 89960138 C G TCF25 Missense_Mutation p.L234V 0.26 deleterious(0.01) benign(0.299) TCGA-DD-A1EB-01 17 10296419 10296419 T G MYH8 Missense_Mutation p.K1759Q 0.04 deleterious(0.01) benign(0.101) TCGA-DD-A1EB-01 17 27493801 27493801 T C MYO18A Missense_Mutation p.K53R 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DD-A1EB-01 17 35766431 35766431 A CGAG ACACA 5'UTR 0.27 TCGA-DD-A1EB-01 17 36483358 36483358 C A GPR179 Missense_Mutation p.V2032L 0.40 tolerated(0.14) benign(0.004) TCGA-DD-A1EB-01 17 42152763 42152763 G A G6PC3 Missense_Mutation p.M207I 0.35 deleterious(0.02) benign(0.003) TCGA-DD-A1EB-01 17 56083127 56083127 T C SRSF1 Intron 0.33 TCGA-DD-A1EB-01 17 73836847 73836847 G T UNC13D Missense_Mutation p.R227S 0.26 tolerated(0.07) possibly_damaging(0.78) TCGA-DD-A1EB-01 17 74003252 74003252 G T EVPL Missense_Mutation p.P2012T 0.17 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EB-01 17 7578554 7578554 A C TP53 Missense_Mutation p.Y126D 0.65 deleterious(0) probably_damaging(1) TCGA-DD-A1EB-01 17 76160461 76160461 G T C17orf99 Intron 0.42 TCGA-DD-A1EB-01 17 76886840 76886840 G A DDC8 Silent p.D582D 0.21 TCGA-DD-A1EB-01 18 72346946 72346946 G A ZNF407 Missense_Mutation p.G1324D 0.45 deleterious(0.02) benign(0.057) TCGA-DD-A1EB-01 19 15512065 15512065 C T AKAP8L Missense_Mutation p.G238S 0.75 deleterious(0.03) possibly_damaging(0.907) TCGA-DD-A1EB-01 19 48945208 48945208 G A GRIN2D Missense_Mutation p.G812E 0.24 tolerated(0.13) probably_damaging(0.987) TCGA-DD-A1EB-01 19 53057994 53057994 G T ZNF808 Missense_Mutation p.A609S 0.39 tolerated(1) benign(0.03) TCGA-DD-A1EB-01 19 53209133 53209133 T C ZNF611 Missense_Mutation p.H392R 0.37 deleterious(0.01) probably_damaging(0.995) TCGA-DD-A1EB-01 19 55222131 55222131 C T AC098784.2 3'Flank 0.38 TCGA-DD-A1EB-01 19 57772970 57772970 G A CTC-444N24.8 RNA 0.32 TCGA-DD-A1EB-01 19 6714360 6714360 T C C3 Intron 0.40 TCGA-DD-A1EB-01 1 144852472 144852472 T C PDE4DIP Intron 0.19 TCGA-DD-A1EB-01 1 145109670 145109670 C A SEC22B RNA 0.07 TCGA-DD-A1EB-01 1 145528004 145528004 G C ITGA10 Missense_Mutation p.A81P 0.63 tolerated(0.28) benign(0.001) TCGA-DD-A1EB-01 1 146714372 146714372 A G CHD1L Missense_Mutation p.T7A 0.39 tolerated_low_confidence(1) benign(0) TCGA-DD-A1EB-01 1 155899509 155899509 T G KIAA0907 Missense_Mutation p.Q126H 0.31 deleterious(0) probably_damaging(0.996) TCGA-DD-A1EB-01 1 155931469 155931469 G T ARHGEF2 Missense_Mutation p.A484E 0.14 deleterious(0.01) possibly_damaging(0.807) TCGA-DD-A1EB-01 1 155988138 155988138 T C SSR2 Silent p.L59L 0.33 TCGA-DD-A1EB-01 1 156640645 156640645 C A NES Missense_Mutation p.G1112V 0.28 deleterious(0) possibly_damaging(0.777) TCGA-DD-A1EB-01 1 158450632 158450632 G T OR10R2 Missense_Mutation p.R322I 0.24 tolerated(0.06) possibly_damaging(0.602) TCGA-DD-A1EB-01 1 162367065 162367065 T A SH2D1B 3'UTR 0.31 TCGA-DD-A1EB-01 1 162731029 162731029 G T DDR2 Missense_Mutation p.G295V 0.23 deleterious(0) probably_damaging(0.917) TCGA-DD-A1EB-01 1 164768965 164768965 G T PBX1 Missense_Mutation p.M180I 0.32 tolerated(0.07) probably_damaging(0.998) TCGA-DD-A1EB-01 1 166974345 166974345 G A MAEL Silent p.L227L 0.26 TCGA-DD-A1EB-01 1 172557990 172557990 G C SUCO Missense_Mutation p.E583D 0.29 tolerated(0.1) benign(0.177) TCGA-DD-A1EB-01 1 178489807 178489807 G C TEX35 Splice_Site p.X114_splice 0.24 TCGA-DD-A1EB-01 1 182443063 182443063 G T RGSL1 Missense_Mutation p.D273Y 0.33 deleterious(0.01) benign(0.434) TCGA-DD-A1EB-01 1 183106886 183106886 A G LAMC1 Missense_Mutation p.K1466R 0.28 tolerated(0.71) benign(0.001) TCGA-DD-A1EB-01 1 185950141 185950141 T G HMCN1 Missense_Mutation p.I866M 0.25 probably_damaging(0.996) TCGA-DD-A1EB-01 1 204408086 204408086 G C PIK3C2B Missense_Mutation p.P1165A 0.19 tolerated(0.07) probably_damaging(0.995) TCGA-DD-A1EB-01 1 205180511 205180511 G A DSTYK Silent p.F51F 0.37 TCGA-DD-A1EB-01 1 22016544 22016544 C T USP48 Missense_Mutation p.D978N 0.35 tolerated(0.26) benign(0.004) TCGA-DD-A1EB-01 1 228879612 228879612 G A RHOU 3'UTR 0.42 TCGA-DD-A1EB-01 1 232944949 232944949 A - MAP10 3'UTR 0.28 TCGA-DD-A1EB-01 1 237580423 237580423 C T RYR2 Missense_Mutation p.A283V 0.38 benign(0.012) TCGA-DD-A1EB-01 1 237972285 237972285 A G RYR2 Missense_Mutation p.K4795E 0.42 possibly_damaging(0.874) TCGA-DD-A1EB-01 1 248737900 248737900 G A OR2T34 Silent p.L53L 0.30 TCGA-DD-A1EB-01 1 27687685 27687685 C T MAP3K6 Missense_Mutation p.V599I 0.08 deleterious(0.01) benign(0.047) TCGA-DD-A1EB-01 1 54348948 54348948 T A YIPF1 Missense_Mutation p.E11D 0.17 deleterious(0.04) benign(0.037) TCGA-DD-A1EB-01 1 55223846 55223846 C T PARS2 Missense_Mutation p.G330D 0.40 deleterious(0.05) possibly_damaging(0.743) TCGA-DD-A1EB-01 1 85488130 85488130 A G MCOLN3 Intron 0.60 TCGA-DD-A1EB-01 20 25457369 25457369 C T NINL Missense_Mutation p.C853Y 0.34 tolerated(1) benign(0) TCGA-DD-A1EB-01 20 31825880 31825880 G T BPIFA1 Silent p.L60L 0.40 TCGA-DD-A1EB-01 20 47269916 47269916 G A PREX1 Missense_Mutation p.R777W 0.48 deleterious(0) possibly_damaging(0.453) TCGA-DD-A1EB-01 20 5096123 5096123 T C PCNA Silent p.T226T 0.44 TCGA-DD-A1EB-01 20 60968622 60968622 G T CABLES2 Missense_Mutation p.L252M 0.46 deleterious(0) possibly_damaging(0.77) TCGA-DD-A1EB-01 20 62250764 62250764 G C GMEB2 5'UTR 0.32 TCGA-DD-A1EB-01 21 34876612 34876612 T A GART Missense_Mutation p.D951V 0.34 deleterious(0) probably_damaging(0.996) TCGA-DD-A1EB-01 21 46011435 46011435 C A KRTAP10-6 Missense_Mutation p.V311L 0.41 deleterious(0.03) probably_damaging(0.974) TCGA-DD-A1EB-01 21 46686257 46686257 G A POFUT2 Intron 0.60 TCGA-DD-A1EB-01 22 18273818 18273818 C T MICAL3 Missense_Mutation p.E1924K 0.38 probably_damaging(0.998) TCGA-DD-A1EB-01 22 26423608 26423608 T C MYO18B Silent p.D2556D 0.37 TCGA-DD-A1EB-01 22 26423679 26423679 A C MYO18B Intron 0.41 TCGA-DD-A1EB-01 22 26706636 26706636 G A SEZ6L Silent p.R505R 0.36 TCGA-DD-A1EB-01 22 46751486 46751486 G A TRMU Splice_Site p.X340_splice 0.74 TCGA-DD-A1EB-01 2 101554302 101554302 C - NPAS2 Frame_Shift_Del p.P121Rfs*10 0.35 TCGA-DD-A1EB-01 2 121981777 121981777 C T TFCP2L1 3'UTR 0.41 TCGA-DD-A1EB-01 2 179475909 179475909 C G TTN Missense_Mutation p.V16983L 0.51 TCGA-DD-A1EB-01 2 27355507 27355507 G A PREB Missense_Mutation p.T239I 0.31 tolerated(0.18) benign(0.002) TCGA-DD-A1EB-01 2 28065967 28065967 A G RBKS Silent p.L161L 0.29 TCGA-DD-A1EB-01 3 125295107 125295107 C A OSBPL11 Missense_Mutation p.V198F 0.37 tolerated(0.2) benign(0.408) TCGA-DD-A1EB-01 3 145828234 145828234 A G PLOD2 Missense_Mutation p.F114L 0.43 deleterious(0.01) benign(0.096) TCGA-DD-A1EB-01 3 158322940 158322940 G C MLF1 Missense_Mutation p.L283F 0.46 tolerated_low_confidence(1) benign(0.001) TCGA-DD-A1EB-01 3 159708075 159708075 G T IL12A Missense_Mutation p.R80S 0.25 tolerated(0.34) benign(0.003) TCGA-DD-A1EB-01 3 180325533 180325533 A - TTC14 Frame_Shift_Del p.K424Nfs*12 0.33 TCGA-DD-A1EB-01 3 182756877 182756877 G C MCCC1 Silent p.V438V 0.45 TCGA-DD-A1EB-01 3 190030689 190030689 G T CLDN1 Silent p.V120V 0.34 TCGA-DD-A1EB-01 3 195473966 195473966 A G MUC4 3'UTR 0.38 TCGA-DD-A1EB-01 3 195473978 195473978 G - MUC4 3'UTR 0.37 TCGA-DD-A1EB-01 3 197592314 197592314 T C LRCH3 Silent p.A579A 0.37 TCGA-DD-A1EB-01 3 27758974 27758974 T A EOMES Missense_Mutation p.I550F 0.36 tolerated(0.07) possibly_damaging(0.816) TCGA-DD-A1EB-01 3 44968182 44968182 C T ZDHHC3 Silent p.%3D 0.35 TCGA-DD-A1EB-01 3 57283493 57283493 G T APPL1 Missense_Mutation p.M323I 0.40 tolerated(0.24) benign(0.019) TCGA-DD-A1EB-01 3 9932270 9932270 C T JAGN1 5'UTR 0.48 TCGA-DD-A1EB-01 4 100266044 100266044 T C ADH1C Missense_Mutation p.Y181C 0.70 probably_damaging(0.996) TCGA-DD-A1EB-01 4 104060948 104060948 T C CENPE Missense_Mutation p.R2068G 0.68 benign(0.004) TCGA-DD-A1EB-01 4 114278315 114278315 A T ANK2 Silent p.S2847S 0.36 TCGA-DD-A1EB-01 4 140272693 140272693 A G NAA15 Silent p.L314L 0.45 TCGA-DD-A1EB-01 4 184431731 184431731 A G ING2 Missense_Mutation p.T157A 0.37 deleterious(0.03) benign(0.057) TCGA-DD-A1EB-01 4 186533094 186533094 C T SORBS2 Nonsense_Mutation p.W1075* 0.06 TCGA-DD-A1EB-01 4 44176879 44176879 G A KCTD8 Silent p.I450I 0.46 TCGA-DD-A1EB-01 4 46967062 46967062 C A GABRA4 Missense_Mutation p.R353S 0.37 deleterious(0.02) benign(0.142) TCGA-DD-A1EB-01 4 47746441 47746441 A C CORIN Silent p.P259P 0.33 TCGA-DD-A1EB-01 4 71232505 71232505 C A SMR3A Missense_Mutation p.L67I 0.39 tolerated_low_confidence(0.37) unknown(0) TCGA-DD-A1EB-01 4 75971384 75971384 A G PARM1 Missense_Mutation p.Y287C 0.38 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EB-01 4 76489342 76489342 C T C4orf26 Missense_Mutation p.R44C 0.49 deleterious_low_confidence(0.04) benign(0.001) TCGA-DD-A1EB-01 5 121487810 121487810 C T ZNF474 Missense_Mutation p.S42F 0.45 tolerated(0.71) benign(0.014) TCGA-DD-A1EB-01 5 128368891 128368891 C A SLC27A6 Nonsense_Mutation p.Y592* 0.37 TCGA-DD-A1EB-01 5 138287486 138287486 T C SIL1 Silent p.A285A 0.33 TCGA-DD-A1EB-01 5 140077173 140077173 G A HARS2 Missense_Mutation p.R406Q 0.39 deleterious(0.02) benign(0.109) TCGA-DD-A1EB-01 5 140580796 140580796 C T PCDHB11 Silent p.N483N 0.41 TCGA-DD-A1EB-01 5 141041372 141041372 A G ARAP3 Intron 0.39 TCGA-DD-A1EB-01 5 176003023 176003023 T C CDHR2 Missense_Mutation p.M344T 0.31 tolerated(1) benign(0) TCGA-DD-A1EB-01 5 176887553 176887553 C T DBN1 Missense_Mutation p.A281T 0.48 deleterious(0) probably_damaging(0.987) TCGA-DD-A1EB-01 5 178358877 178358877 G T ZFP2 Missense_Mutation p.C188F 0.40 deleterious(0) probably_damaging(1) TCGA-DD-A1EB-01 5 19612615 19612615 C A CDH18 Missense_Mutation p.G247W 0.60 deleterious(0) probably_damaging(1) TCGA-DD-A1EB-01 5 26906920 26906920 G A CDH9 Missense_Mutation p.T184I 0.54 deleterious(0.03) benign(0.012) TCGA-DD-A1EB-01 5 41381972 41381972 C T PLCXD3 Silent p.V256V 0.55 TCGA-DD-A1EB-01 5 60200656 60200656 A G ERCC8 Silent p.H148H 0.39 TCGA-DD-A1EB-01 5 60240846 60240846 C G ERCC8 5'UTR 0.52 TCGA-DD-A1EB-01 5 79027939 79027953 ATATTTAGAGCCTGA - CMYA5 In_Frame_Del p.Y1118_E1122del 0.23 TCGA-DD-A1EB-01 5 88025144 88025144 G T MEF2C Silent p.S295S 0.39 TCGA-DD-A1EB-01 6 107391941 107391941 C T BEND3 Missense_Mutation p.V152M 0.44 tolerated_low_confidence(0.15) benign(0.063) TCGA-DD-A1EB-01 6 107475922 107475922 G C PDSS2 Nonsense_Mutation p.Y367* 0.44 TCGA-DD-A1EB-01 6 116441243 116441243 G T COL10A1 Missense_Mutation p.P679Q 0.43 tolerated(0.07) probably_damaging(0.987) TCGA-DD-A1EB-01 6 116441244 116441244 G T COL10A1 Missense_Mutation p.P679T 0.42 deleterious(0.01) probably_damaging(0.974) TCGA-DD-A1EB-01 6 116987856 116987856 T A ZUFSP Missense_Mutation p.E167V 0.08 tolerated(0.21) benign(0.088) TCGA-DD-A1EB-01 6 116987857 116987857 C A ZUFSP Nonsense_Mutation p.E167* 0.08 TCGA-DD-A1EB-01 6 136589325 136589325 C A BCLAF1 Missense_Mutation p.G791V 0.12 deleterious(0) probably_damaging(0.979) TCGA-DD-A1EB-01 6 166944752 166944752 G A RPS6KA2 Missense_Mutation p.A97V 0.31 deleterious(0) probably_damaging(0.987) TCGA-DD-A1EB-01 6 26637760 26637762 TTC - ZNF322 In_Frame_Del p.K341del 0.17 TCGA-DD-A1EB-01 6 33141302 33141302 A G COL11A2 Missense_Mutation p.F801L 0.09 benign(0.294) TCGA-DD-A1EB-01 6 41309741 41309741 G T NCR2 Intron 0.43 TCGA-DD-A1EB-01 6 43153266 43153266 G A CUL9 Missense_Mutation p.R223H 0.41 deleterious(0.01) possibly_damaging(0.84) TCGA-DD-A1EB-01 6 43273593 43273593 C G CRIP3 Missense_Mutation p.G192R 0.32 deleterious(0) probably_damaging(1) TCGA-DD-A1EB-01 6 44272531 44272531 C G AARS2 Missense_Mutation p.V535L 0.13 deleterious(0) possibly_damaging(0.725) TCGA-DD-A1EB-01 6 79688429 79688429 C A PHIP Splice_Site p.X924_splice 0.40 TCGA-DD-A1EB-01 6 90009577 90009577 A G GABRR2 Missense_Mutation p.Y41H 0.44 tolerated(0.5) benign(0.001) TCGA-DD-A1EB-01 7 102453725 102453725 T C FBXL13 3'UTR 0.41 TCGA-DD-A1EB-01 7 11464348 11464348 C G THSD7A Missense_Mutation p.E1120Q 0.08 deleterious(0.02) possibly_damaging(0.613) TCGA-DD-A1EB-01 7 117375351 117375351 G T CTTNBP2 Missense_Mutation p.S1220R 0.43 deleterious(0.02) benign(0.318) TCGA-DD-A1EB-01 7 129760678 129760678 G T KLHDC10 Missense_Mutation p.V189L 0.25 tolerated(0.56) benign(0.006) TCGA-DD-A1EB-01 7 129760679 129760679 T A KLHDC10 Missense_Mutation p.V189E 0.24 deleterious(0.01) possibly_damaging(0.798) TCGA-DD-A1EB-01 7 131883315 131883315 G T PLXNA4 Missense_Mutation p.D889E 0.26 tolerated(0.89) benign(0.027) TCGA-DD-A1EB-01 7 135418945 135418945 G T FAM180A Missense_Mutation p.S100R 0.49 tolerated(0.79) benign(0.005) TCGA-DD-A1EB-01 7 144070301 144070301 G T ARHGEF5 Missense_Mutation p.C1355F 0.18 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EB-01 7 144070302 144070302 C T ARHGEF5 Silent p.C1355C 0.18 TCGA-DD-A1EB-01 7 23296688 23296688 G T GPNMB Intron 0.54 TCGA-DD-A1EB-01 7 23296689 23296689 G T GPNMB Intron 0.55 TCGA-DD-A1EB-01 7 31691634 31691634 G T CCDC129 Silent p.R957R 0.47 TCGA-DD-A1EB-01 7 48147819 48147819 C T UPP1 Silent p.A266A 0.45 TCGA-DD-A1EB-01 7 48559835 48559835 A G ABCA13 Missense_Mutation p.T4666A 0.35 possibly_damaging(0.872) TCGA-DD-A1EB-01 7 810170 810170 T C HEATR2 Missense_Mutation p.S616P 0.59 tolerated(0.23) benign(0.122) TCGA-DD-A1EB-01 7 95225562 95225562 T C PDK4 Missense_Mutation p.N15S 0.45 tolerated(0.71) benign(0) TCGA-DD-A1EB-01 8 121530146 121530146 A G MTBP Missense_Mutation p.N768D 0.42 tolerated(0.2) benign(0.023) TCGA-DD-A1EB-01 8 13965672 13965672 C T SGCZ Missense_Mutation p.R207K 0.37 tolerated(0.39) benign(0.002) TCGA-DD-A1EB-01 8 28206219 28206219 A T ZNF395 3'UTR 0.10 TCGA-DD-A1EB-01 8 29120569 29120569 A G KIF13B 5'UTR 0.10 TCGA-DD-A1EB-01 8 2976080 2976080 G T CSMD1 Missense_Mutation p.P2091T 0.39 benign(0.205) TCGA-DD-A1EB-01 8 48839799 48839799 T C PRKDC Missense_Mutation p.I792V 0.42 benign(0.163) TCGA-DD-A1EB-01 8 52321693 52321693 G A PXDNL Missense_Mutation p.P831S 0.55 tolerated(0.61) benign(0.021) TCGA-DD-A1EB-01 8 52773719 52773719 T C PCMTD1 5'UTR 0.37 TCGA-DD-A1EB-01 8 89339405 89339405 G C MMP16 Missense_Mutation p.R11G 0.30 tolerated_low_confidence(0.09) benign(0) TCGA-DD-A1EB-01 8 94937436 94937436 C G PDP1 3'UTR 0.48 TCGA-DD-A1EB-01 8 9953303 9953303 T C MSRA Intron 0.44 TCGA-DD-A1EB-01 9 124855268 124855268 T C TTLL11 Missense_Mutation p.K144E 0.38 tolerated_low_confidence(0.2) benign(0.082) TCGA-DD-A1EB-01 9 124966851 124966851 G C LHX6 3'UTR 0.28 TCGA-DD-A1EB-01 9 135984101 135984101 G A RALGDS Missense_Mutation p.A246V 0.65 tolerated(0.06) probably_damaging(0.987) TCGA-DD-A1EB-01 9 26923264 26923264 C A PLAA Silent p.L317L 0.35 TCGA-DD-A1EB-01 9 67968357 67968357 A T ANKRD20A1 Missense_Mutation p.D639V 0.32 deleterious(0) probably_damaging(0.937) TCGA-DD-A1EB-01 9 6981046 6981046 C T KDM4C Missense_Mutation p.P348L 0.51 deleterious(0.03) benign(0.162) TCGA-DD-A1EB-01 9 72064664 72064664 C A APBA1 Nonsense_Mutation p.E673* 0.38 TCGA-DD-A1EB-01 9 72879327 72879327 C G SMC5 Missense_Mutation p.A98G 0.46 tolerated(0.16) benign(0.079) TCGA-DD-A1EB-01 9 84563976 84563976 C A RP11-383M4.6 Intron 0.31 TCGA-DD-A1EB-01 9 86457172 86457172 C T KIF27 Missense_Mutation p.R1234Q 0.41 tolerated(0.69) benign(0.004) TCGA-DD-A1EB-01 X 107807134 107807134 C A COL4A5 Missense_Mutation p.P85Q 0.44 unknown(0) TCGA-DD-A1EB-01 X 109246844 109246844 C T TMEM164 5'UTR 0.44 TCGA-DD-A1EB-01 X 117819877 117819877 G C DOCK11 3'UTR 0.50 TCGA-DD-A1EB-01 X 12712563 12712563 T C FRMPD4 Missense_Mutation p.L308P 0.42 deleterious(0) probably_damaging(1) TCGA-DD-A1EB-01 X 13337139 13337139 G T ATXN3L Silent p.G305G 0.45 TCGA-DD-A1EB-01 X 135487872 135487872 T C GPR112 Silent p.S2892S 0.35 TCGA-DD-A1EB-01 X 135582923 135582923 T G HTATSF1 Silent p.L172L 0.42 TCGA-DD-A1EB-01 X 135618180 135618180 A G VGLL1 Translation_Start_Site p.M1? 0.48 deleterious(0) probably_damaging(0.987) TCGA-DD-A1EB-01 X 135767930 135767930 G C ARHGEF6 Missense_Mutation p.S433C 0.37 deleterious(0) possibly_damaging(0.815) TCGA-DD-A1EB-01 X 17768332 17768332 G T SCML1 Missense_Mutation p.G208W 0.36 tolerated(0.11) possibly_damaging(0.841) TCGA-DD-A1EB-01 X 21676042 21676042 A C KLHL34 5'UTR 0.37 TCGA-DD-A1EB-01 X 27998516 27998516 G A DCAF8L1 Silent p.F312F 0.32 TCGA-DD-A1EB-01 X 31200854 31200854 C A DMD Splice_Site p.X3325_splice 0.38 TCGA-DD-A1EB-01 X 3240505 3240505 T A MXRA5 Missense_Mutation p.E1074V 0.37 tolerated(0.06) benign(0.044) TCGA-DD-A1EB-01 X 41428985 41428985 T C CASK Silent p.K506K 0.38 TCGA-DD-A1EB-01 X 43652777 43652777 G T MAOB Missense_Mutation p.H273N 0.34 deleterious(0.01) probably_damaging(0.956) TCGA-DD-A1EB-01 X 47496222 47496222 T C ELK1 3'UTR 0.50 TCGA-DD-A1EB-01 X 62926264 62926264 G T ARHGEF9 Missense_Mutation p.D85E 0.45 tolerated(0.56) benign(0.004) TCGA-DD-A1EB-01 X 70316754 70316754 C G FOXO4 Missense_Mutation p.Q126E 0.41 deleterious(0) possibly_damaging(0.734) TCGA-DD-A1EB-01 X 89177576 89177576 G T TGIF2LX Missense_Mutation p.K164N 0.41 tolerated(0.42) benign(0.074) TCGA-DD-A1EC-01 10 70951452 70951452 A G SUPV3L1 Silent p.T261T 0.16 TCGA-DD-A1EC-01 12 88508195 88508195 A C CEP290 Splice_Site p.X684_splice 0.28 TCGA-DD-A1EC-01 13 32912486 32912486 C T BRCA2 Missense_Mutation p.H1332Y 0.19 tolerated(1) benign(0.001) TCGA-DD-A1EC-01 13 98670928 98670928 G A IPO5 Missense_Mutation p.G954S 0.21 deleterious(0.03) probably_damaging(0.967) TCGA-DD-A1EC-01 16 31925948 31925948 T C ZNF267 Silent p.N126N 0.20 TCGA-DD-A1EC-01 17 21320086 21320086 T C KCNJ12 3'UTR 0.07 TCGA-DD-A1EC-01 17 46262096 46262096 G A SKAP1 Missense_Mutation p.R186C 0.22 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EC-01 17 65905845 65905845 A G BPTF Missense_Mutation p.D987G 0.16 benign(0.007) TCGA-DD-A1EC-01 17 72367888 72367888 G A GPR142 Missense_Mutation p.A180T 0.23 tolerated(0.06) possibly_damaging(0.532) TCGA-DD-A1EC-01 17 73918105 73918105 C G FBF1 Missense_Mutation p.G468R 0.20 tolerated(0.32) benign(0.221) TCGA-DD-A1EC-01 19 41056209 41056209 C A SPTBN4 Silent p.V1550V 0.14 TCGA-DD-A1EC-01 19 50912834 50912834 C T POLD1 Missense_Mutation p.R689W 0.18 deleterious(0) possibly_damaging(0.67) TCGA-DD-A1EC-01 1 144859947 144859947 T C PDE4DIP Missense_Mutation p.H2046R 0.09 tolerated(0.21) benign(0.142) TCGA-DD-A1EC-01 1 202897704 202897716 ACAACGCTGCGGC - KLHL12 5'Flank 0.16 TCGA-DD-A1EC-01 1 206730943 206730943 G T RASSF5 Intron 0.15 TCGA-DD-A1EC-01 1 207143612 207143612 G A FCAMR 5'UTR 0.46 TCGA-DD-A1EC-01 1 27210697 27210697 C A GPN2 Nonsense_Mutation p.E272* 0.12 TCGA-DD-A1EC-01 1 38274776 38274776 T C C1orf122 3'UTR 0.18 TCGA-DD-A1EC-01 1 67795378 67795378 G C IL12RB2 Missense_Mutation p.R258T 0.16 deleterious(0) probably_damaging(0.938) TCGA-DD-A1EC-01 20 49218836 49218836 C A FAM65C Missense_Mutation p.G474W 0.31 deleterious(0.02) possibly_damaging(0.641) TCGA-DD-A1EC-01 20 49218837 49218837 T G FAM65C Silent p.G473G 0.31 TCGA-DD-A1EC-01 22 38881912 38881912 T G DDX17 3'UTR 0.31 TCGA-DD-A1EC-01 22 39410322 39410322 T G APOBEC3C 5'UTR 0.20 TCGA-DD-A1EC-01 2 100906810 100906810 G A LONRF2 Silent p.D610D 0.15 TCGA-DD-A1EC-01 2 206927762 206927762 A T INO80D 5'UTR 0.11 TCGA-DD-A1EC-01 2 223505623 223505623 T A FARSB Silent p.V99V 0.16 TCGA-DD-A1EC-01 2 234737682 234737682 C T MROH2A Silent p.D1470D 0.08 TCGA-DD-A1EC-01 2 26915844 26915844 A G KCNK3 Missense_Mutation p.E34G 0.15 deleterious(0) probably_damaging(0.994) TCGA-DD-A1EC-01 2 32692803 32692803 T C BIRC6 Missense_Mutation p.M1856T 0.17 benign(0.437) TCGA-DD-A1EC-01 3 127323594 127323594 G C MCM2 Missense_Mutation p.G127A 0.14 tolerated(1) benign(0.005) TCGA-DD-A1EC-01 3 156866183 156866183 G T CCNL1 Missense_Mutation p.S476R 0.18 tolerated(0.23) unknown(0) TCGA-DD-A1EC-01 3 49722762 49722762 G A MST1 Missense_Mutation p.R493C 0.24 deleterious(0.03) benign(0.001) TCGA-DD-A1EC-01 3 62484884 62484884 C T CADPS Missense_Mutation p.E887K 0.26 deleterious(0.01) possibly_damaging(0.621) TCGA-DD-A1EC-01 4 138451498 138451498 C T PCDH18 Missense_Mutation p.R582H 0.16 tolerated(0.58) benign(0.002) TCGA-DD-A1EC-01 4 160225597 160225597 G C RAPGEF2 Missense_Mutation p.G55A 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-DD-A1EC-01 5 140255564 140255564 C G PCDHA12 Silent p.T169T 0.09 TCGA-DD-A1EC-01 7 4799104 4799104 T G FOXK1 Missense_Mutation p.V525G 0.18 deleterious(0.03) benign(0.269) TCGA-DD-A1EC-01 X 119590608 119590608 A C LAMP2 Nonsense_Mutation p.Y27* 0.18 TCGA-DD-A1ED-01 10 17153015 17153015 G C CUBN Missense_Mutation p.I306M 0.19 deleterious(0) probably_damaging(0.968) TCGA-DD-A1ED-01 12 31604973 31604973 A - DENND5B Frame_Shift_Del p.F510Lfs*23 0.12 TCGA-DD-A1ED-01 12 49522077 49522077 G A TUBA1B Silent p.S340S 0.17 TCGA-DD-A1ED-01 13 103698606 103698606 A G SLC10A2 Silent p.Y308Y 0.14 TCGA-DD-A1ED-01 13 115089644 115089644 T C CHAMP1 Silent p.P109P 0.15 TCGA-DD-A1ED-01 13 53237230 53237230 G C SUGT1 Splice_Site p.X160_splice 0.08 TCGA-DD-A1ED-01 14 74960002 74960002 G A NPC2 5'UTR 0.24 TCGA-DD-A1ED-01 15 75047231 75047231 T C CYP1A2 Silent p.F451F 0.10 TCGA-DD-A1ED-01 16 81819689 81819689 G A PLCG2 Missense_Mutation p.S32N 0.08 tolerated(0.27) benign(0.007) TCGA-DD-A1ED-01 17 19705089 19705089 C A ULK2 Splice_Site p.X481_splice 0.10 TCGA-DD-A1ED-01 17 37822111 37822111 T C TCAP Missense_Mutation p.Y85H 0.20 tolerated(0.1) probably_damaging(0.999) TCGA-DD-A1ED-01 17 4461436 4461436 A G GGT6 Silent p.G452G 0.09 TCGA-DD-A1ED-01 18 22029801 22029801 G A IMPACT Missense_Mutation p.V260I 0.09 tolerated(0.06) probably_damaging(0.997) TCGA-DD-A1ED-01 18 29045290 29045290 G C DSG3 Missense_Mutation p.M427I 0.07 tolerated(1) benign(0.073) TCGA-DD-A1ED-01 18 32889822 32889822 G T ZNF271 RNA 0.10 TCGA-DD-A1ED-01 18 7016513 7016513 G T LAMA1 Missense_Mutation p.A989D 0.20 tolerated(0.48) benign(0.035) TCGA-DD-A1ED-01 19 42583630 42583630 G T ZNF574 Missense_Mutation p.R291L 0.19 tolerated(0.07) possibly_damaging(0.726) TCGA-DD-A1ED-01 19 43920572 43920572 G A TEX101 Missense_Mutation p.E104K 0.14 tolerated(0.84) benign(0.048) TCGA-DD-A1ED-01 19 49442937 49442937 G T DHDH Missense_Mutation p.V200L 0.13 tolerated(0.33) benign(0.03) TCGA-DD-A1ED-01 19 57027722 57027722 T G ZNF471 Missense_Mutation p.L38V 0.10 deleterious(0.04) possibly_damaging(0.874) TCGA-DD-A1ED-01 20 30365314 30365314 G T TPX2 Missense_Mutation p.S252I 0.09 tolerated(0.44) benign(0.002) TCGA-DD-A1ED-01 22 18835268 18835268 C T AC008132.13 Missense_Mutation p.P275L 0.17 deleterious(0.02) possibly_damaging(0.864) TCGA-DD-A1ED-01 22 25153964 25153964 G A PIWIL3 Missense_Mutation p.P89L 0.22 tolerated(0.3) benign(0) TCGA-DD-A1ED-01 2 162061220 162061220 C A TANK Missense_Mutation p.D81E 0.18 tolerated(0.2) benign(0.012) TCGA-DD-A1ED-01 2 179296788 179296788 A G PRKRA 3'UTR 0.13 TCGA-DD-A1ED-01 2 187693106 187693106 C A ZSWIM2 Missense_Mutation p.V503L 0.14 tolerated(0.27) benign(0.009) TCGA-DD-A1ED-01 2 210560370 210560370 C G MAP2 Missense_Mutation p.S1159C 0.11 deleterious_low_confidence(0.01) probably_damaging(0.976) TCGA-DD-A1ED-01 2 27351823 27351823 C A ABHD1 Missense_Mutation p.Q96K 0.11 tolerated(0.97) benign(0.055) TCGA-DD-A1ED-01 3 26751136 26751136 G A LRRC3B 5'UTR 0.08 TCGA-DD-A1ED-01 3 51749655 51749664 CTTCATTGCC - GRM2 Frame_Shift_Del p.F623Sfs*92 0.17 TCGA-DD-A1ED-01 5 52402917 52402917 C A MOCS2 Nonsense_Mutation p.E30* 0.21 TCGA-DD-A1ED-01 5 55260061 55260075 AATACACAGTAGAAT - IL6ST In_Frame_Del p.Y186_Y190del 0.12 TCGA-DD-A1ED-01 5 93076777 93076777 A C POU5F2 Missense_Mutation p.C165G 0.16 deleterious(0) possibly_damaging(0.537) TCGA-DD-A1ED-01 6 30697798 30697798 C T FLOT1 Splice_Site p.X418_splice 0.15 TCGA-DD-A1ED-01 6 96663385 96663385 G A FUT9 3'UTR 0.07 TCGA-DD-A1ED-01 8 86022370 86022370 C T LRRCC1 Silent p.L111L 0.20 TCGA-DD-A1ED-01 9 91961856 91961856 A G SECISBP2 Missense_Mutation p.S499G 0.10 tolerated(0.16) benign(0.005) TCGA-DD-A1ED-01 X 154124423 154124423 A G F8 Missense_Mutation p.F2120L 0.08 deleterious(0) probably_damaging(0.999) TCGA-DD-A1ED-01 X 76972657 76972657 T C ATRX Silent p.E28E 0.10 TCGA-DD-A1ED-01 Y 3447285 3447285 T A TGIF2LY 5'UTR 0.12 TCGA-DD-A1EE-01 10 101802222 101802222 C T CPN1 Missense_Mutation p.E447K 0.14 tolerated(0.43) benign(0.002) TCGA-DD-A1EE-01 10 102738456 102738456 C T MRPL43 3'Flank 0.40 TCGA-DD-A1EE-01 10 104679587 104679587 G A CNNM2 Missense_Mutation p.M450I 0.46 deleterious(0) probably_damaging(0.961) TCGA-DD-A1EE-01 10 106959776 106959776 C T SORCS3 Missense_Mutation p.L677F 0.04 tolerated(0.88) benign(0.206) TCGA-DD-A1EE-01 10 112343665 112343665 G A SMC3 Missense_Mutation p.E346K 0.14 tolerated(0.4) benign(0.241) TCGA-DD-A1EE-01 10 115609989 115609989 T C DCLRE1A Missense_Mutation p.D292G 0.05 deleterious(0.03) benign(0.082) TCGA-DD-A1EE-01 10 124605313 124605313 G A CUZD1 Missense_Mutation p.S16F 0.18 tolerated_low_confidence(0.07) benign(0.317) TCGA-DD-A1EE-01 10 125769678 125769678 C T CHST15 Nonsense_Mutation p.W558* 0.18 TCGA-DD-A1EE-01 10 128840966 128840966 C A DOCK1 Silent p.V675V 0.13 TCGA-DD-A1EE-01 10 13239672 13239672 C T MCM10 Missense_Mutation p.T676I 0.11 tolerated(0.1) benign(0.033) TCGA-DD-A1EE-01 10 14939003 14939003 A - SUV39H2 Frame_Shift_Del p.D114Tfs*6 0.19 TCGA-DD-A1EE-01 10 22208853 22208853 T C DNAJC1 Silent p.E181E 0.08 TCGA-DD-A1EE-01 10 3201169 3201169 T C PITRM1 Missense_Mutation p.N358S 0.32 deleterious(0.03) possibly_damaging(0.629) TCGA-DD-A1EE-01 10 390969 390969 C A DIP2C Missense_Mutation p.V1105F 0.06 tolerated(0.47) possibly_damaging(0.474) TCGA-DD-A1EE-01 10 52008360 52008360 C T ASAH2 Missense_Mutation p.R4H 0.05 tolerated_low_confidence(0.1) benign(0.011) TCGA-DD-A1EE-01 10 61029860 61029860 G T FAM13C Missense_Mutation p.P201Q 0.05 deleterious(0.02) possibly_damaging(0.776) TCGA-DD-A1EE-01 10 61835056 61835056 C T ANK3 Silent p.T1861T 0.32 TCGA-DD-A1EE-01 10 64573581 64573581 G A EGR2 Silent p.L273L 0.44 TCGA-DD-A1EE-01 10 76978832 76978832 G A VDAC2 Silent p.T69T 0.28 TCGA-DD-A1EE-01 10 88206050 88206050 C T WAPAL Missense_Mutation p.E1091K 0.16 tolerated(0.24) benign(0.027) TCGA-DD-A1EE-01 10 89622870 89622870 G A PTEN 5'UTR 0.05 TCGA-DD-A1EE-01 10 91474892 91474892 A G KIF20B Missense_Mutation p.K298R 0.09 tolerated(0.11) probably_damaging(0.991) TCGA-DD-A1EE-01 10 92508894 92508894 C T HTR7 Missense_Mutation p.V333I 0.07 deleterious(0.02) probably_damaging(0.958) TCGA-DD-A1EE-01 10 92679010 92679011 - T ANKRD1 Frame_Shift_Ins p.L75Tfs*8 0.13 TCGA-DD-A1EE-01 10 94225544 94225544 T C IDE Missense_Mutation p.I793V 0.06 tolerated(0.61) benign(0.004) TCGA-DD-A1EE-01 10 98742351 98742351 A G C10orf12 Missense_Mutation p.M402V 0.36 tolerated(1) benign(0) TCGA-DD-A1EE-01 10 99437748 99437748 G C AVPI1 Missense_Mutation p.Q108E 0.42 tolerated(0.7) benign(0.124) TCGA-DD-A1EE-01 11 111953659 111953659 C T C11orf57 Missense_Mutation p.T282I 0.07 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-DD-A1EE-01 11 120317715 120317715 G C ARHGEF12 Missense_Mutation p.E504Q 0.10 deleterious(0.01) probably_damaging(0.988) TCGA-DD-A1EE-01 11 123513234 123513234 A T SCN3B Missense_Mutation p.V122E 0.08 deleterious(0) probably_damaging(0.977) TCGA-DD-A1EE-01 11 124180637 124180637 G T OR8D1 Missense_Mutation p.A9E 0.11 deleterious(0.01) benign(0.001) TCGA-DD-A1EE-01 11 124252995 124252995 A C OR8B2 Missense_Mutation p.L82R 0.05 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-DD-A1EE-01 11 124310110 124310110 C T OR8B8 Missense_Mutation p.S291N 0.09 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-DD-A1EE-01 11 281055 281055 G C NLRP6 Missense_Mutation p.D441H 0.11 deleterious(0.01) benign(0.422) TCGA-DD-A1EE-01 11 2939298 2939298 G T SLC22A18 Missense_Mutation p.V246L 0.11 deleterious(0.02) benign(0.256) TCGA-DD-A1EE-01 11 30900222 30900222 G C DCDC1 Missense_Mutation p.A1754G 0.12 tolerated(0.38) possibly_damaging(0.567) TCGA-DD-A1EE-01 11 30937205 30937205 T C DCDC1 Missense_Mutation p.Y1169C 0.08 deleterious(0) possibly_damaging(0.878) TCGA-DD-A1EE-01 11 34492538 34492538 G A CAT Missense_Mutation p.G490R 0.48 deleterious(0) probably_damaging(0.995) TCGA-DD-A1EE-01 11 36516546 36516546 T C TRAF6 Missense_Mutation p.T220A 0.09 tolerated(0.47) probably_damaging(0.996) TCGA-DD-A1EE-01 11 45246096 45246096 C T PRDM11 Silent p.G357G 0.09 TCGA-DD-A1EE-01 11 51516034 51516034 C T OR4C46 Silent p.P251P 0.28 TCGA-DD-A1EE-01 11 55339975 55339975 C A OR4C16 Silent p.I124I 0.43 TCGA-DD-A1EE-01 11 55798784 55798784 T A OR5AS1 Missense_Mutation p.V297E 0.30 deleterious(0) probably_damaging(0.921) TCGA-DD-A1EE-01 11 57512438 57512438 G T BTBD18 Missense_Mutation p.S436Y 0.12 deleterious(0) possibly_damaging(0.844) TCGA-DD-A1EE-01 11 60064785 60064785 G T MS4A4A Missense_Mutation p.W106L 0.36 deleterious(0) possibly_damaging(0.741) TCGA-DD-A1EE-01 11 62491884 62491884 T G HNRNPUL2 Missense_Mutation p.S185R 0.17 tolerated(0.52) benign(0.049) TCGA-DD-A1EE-01 11 62566040 62566040 G C NXF1 Missense_Mutation p.R342G 0.12 deleterious(0.04) possibly_damaging(0.459) TCGA-DD-A1EE-01 11 63396832 63396832 C A ATL3 Missense_Mutation p.A529S 0.14 tolerated(0.82) benign(0.004) TCGA-DD-A1EE-01 11 64082291 64082291 G T ESRRA Missense_Mutation p.G217V 0.09 tolerated(1) benign(0) TCGA-DD-A1EE-01 11 64564456 64564456 G T MAP4K2 Missense_Mutation p.H469N 0.13 tolerated(0.09) benign(0.075) TCGA-DD-A1EE-01 11 64878964 64878964 C G VPS51 Missense_Mutation p.L752V 0.11 deleterious(0) probably_damaging(0.997) TCGA-DD-A1EE-01 11 65320914 65320914 T G LTBP3 Missense_Mutation p.K318Q 0.12 tolerated(0.24) probably_damaging(0.999) TCGA-DD-A1EE-01 11 66249912 66249912 G T DPP3 Missense_Mutation p.A81S 0.08 tolerated(0.73) benign(0.001) TCGA-DD-A1EE-01 11 6643329 6643329 C A DCHS1 Missense_Mutation p.C3193F 0.18 tolerated(0.75) benign(0.214) TCGA-DD-A1EE-01 11 67957441 67957441 T A SUV420H1 Missense_Mutation p.T35S 0.06 tolerated(0.99) benign(0.001) TCGA-DD-A1EE-01 11 71721833 71721833 T G NUMA1 Missense_Mutation p.K1573T 0.15 possibly_damaging(0.894) TCGA-DD-A1EE-01 11 71819726 71819726 C A LRTOMT Missense_Mutation p.L211M 0.06 tolerated(0.56) benign(0.271) TCGA-DD-A1EE-01 11 72946821 72946821 G A P2RY2 3'UTR 0.37 TCGA-DD-A1EE-01 11 73022229 73022229 C T ARHGEF17 Missense_Mutation p.P849L 0.06 deleterious_low_confidence(0) possibly_damaging(0.63) TCGA-DD-A1EE-01 11 73372585 73372585 C T PLEKHB1 Missense_Mutation p.L224F 0.23 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EE-01 11 75110602 75110602 A G RPS3 Missense_Mutation p.Q4R 0.06 tolerated(0.11) benign(0.43) TCGA-DD-A1EE-01 11 76858899 76858899 C G MYO7A Missense_Mutation p.S63W 0.12 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 11 76969478 76969478 C T GDPD4 Missense_Mutation p.D273N 0.08 tolerated(0.26) benign(0.011) TCGA-DD-A1EE-01 11 7960259 7960259 G C OR10A3 Missense_Mutation p.T270S 0.09 tolerated(0.58) benign(0.047) TCGA-DD-A1EE-01 11 8662439 8662439 G T TRIM66 Missense_Mutation p.P348T 0.13 tolerated(0.09) benign(0.016) TCGA-DD-A1EE-01 11 9202573 9202573 G T DENND5A Missense_Mutation p.P399Q 0.08 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 11 92085781 92085781 C T FAT3 Missense_Mutation p.A168V 0.08 possibly_damaging(0.792) TCGA-DD-A1EE-01 11 95555181 95555181 C - CEP57 Intron 0.23 TCGA-DD-A1EE-01 12 105431912 105431919 TTAAATAT - ALDH1L2 Frame_Shift_Del p.I703* 0.32 TCGA-DD-A1EE-01 12 105464456 105464456 A G ALDH1L2 Missense_Mutation p.F107S 0.09 deleterious_low_confidence(0.02) possibly_damaging(0.85) TCGA-DD-A1EE-01 12 109182074 109182074 T C SSH1 Missense_Mutation p.K947R 0.12 deleterious_low_confidence(0.04) benign(0.071) TCGA-DD-A1EE-01 12 110581329 110581331 TCT - IFT81 In_Frame_Del p.L310del 0.35 TCGA-DD-A1EE-01 12 112093435 112093435 G C BRAP Missense_Mutation p.L416V 0.09 deleterious(0) benign(0.244) TCGA-DD-A1EE-01 12 116429410 116429410 C T MED13L Missense_Mutation p.D1117N 0.10 deleterious(0) unknown(0) TCGA-DD-A1EE-01 12 124305198 124305198 G T DNAH10 Missense_Mutation p.A1240S 0.07 possibly_damaging(0.5) TCGA-DD-A1EE-01 12 125453127 125453127 C A DHX37 Missense_Mutation p.G454V 0.11 tolerated(0.07) benign(0.027) TCGA-DD-A1EE-01 12 12871889 12871889 G A CDKN1B Splice_Site 0.17 TCGA-DD-A1EE-01 12 133733009 133733009 A G ZNF10 Missense_Mutation p.I393V 0.06 tolerated(0.21) benign(0.068) TCGA-DD-A1EE-01 12 14959587 14959587 C G SMCO3 Missense_Mutation p.E10Q 0.09 tolerated(0.26) benign(0.009) TCGA-DD-A1EE-01 12 18534747 18534747 A T PIK3C2G Missense_Mutation p.E602V 0.04 tolerated(0.12) possibly_damaging(0.855) TCGA-DD-A1EE-01 12 21643210 21643210 C G RECQL Missense_Mutation p.G106A 0.17 deleterious(0.01) benign(0.34) TCGA-DD-A1EE-01 12 2944113 2944113 G A NRIP2 Missense_Mutation p.P13S 0.07 tolerated_low_confidence(0.11) benign(0.008) TCGA-DD-A1EE-01 12 4553334 4553334 C T FGF6 Missense_Mutation p.V139I 0.12 tolerated(0.14) benign(0.004) TCGA-DD-A1EE-01 12 46754882 46754882 G T SLC38A2 3'UTR 0.42 TCGA-DD-A1EE-01 12 52307800 52307800 C T ACVRL1 Missense_Mutation p.L190F 0.16 deleterious(0.01) probably_damaging(1) TCGA-DD-A1EE-01 12 53446269 53446269 A T TENC1 Missense_Mutation p.E82V 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-DD-A1EE-01 12 54447739 54447739 C A HOXC4 Missense_Mutation p.N11K 0.11 tolerated(0.23) benign(0.048) TCGA-DD-A1EE-01 12 55641327 55641327 G A OR6C74 Missense_Mutation p.G86S 0.08 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-DD-A1EE-01 12 55759521 55759521 G T OR6C75 Missense_Mutation p.L209F 0.04 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-DD-A1EE-01 12 56708752 56708752 T C CNPY2 Splice_Site p.X30_splice 0.09 TCGA-DD-A1EE-01 12 56993854 56993854 C A BAZ2A Missense_Mutation p.R1642L 0.09 deleterious(0.04) possibly_damaging(0.902) TCGA-DD-A1EE-01 12 57571304 57571304 G T LRP1 Missense_Mutation p.G1431C 0.15 probably_damaging(1) TCGA-DD-A1EE-01 12 6436974 6436974 T C PLEKHG6 Missense_Mutation p.I742T 0.16 deleterious_low_confidence(0) possibly_damaging(0.791) TCGA-DD-A1EE-01 12 64882345 64882345 A G TBK1 Silent p.R473R 0.39 TCGA-DD-A1EE-01 12 65448938 65448938 G C WIF1 Missense_Mutation p.C326W 0.07 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EE-01 12 6575091 6575091 C G VAMP1 Missense_Mutation p.A69P 0.09 deleterious(0) possibly_damaging(0.6) TCGA-DD-A1EE-01 12 668557 668557 G A B4GALNT3 Nonsense_Mutation p.W953* 0.11 TCGA-DD-A1EE-01 12 7045220 7045220 A T ATN1 Missense_Mutation p.S264C 0.38 benign(0.168) TCGA-DD-A1EE-01 12 70960239 70960239 C G PTPRB Missense_Mutation p.E1294Q 0.09 tolerated(0.32) benign(0.031) TCGA-DD-A1EE-01 12 7522105 7522105 A G CD163L1 Missense_Mutation p.L1296P 0.09 tolerated(0.25) benign(0.049) TCGA-DD-A1EE-01 12 76752567 76752567 T A OSBPL8 Nonsense_Mutation p.K785* 0.36 TCGA-DD-A1EE-01 12 8086448 8086448 G T SLC2A3 Missense_Mutation p.F22L 0.08 tolerated(0.81) benign(0.028) TCGA-DD-A1EE-01 12 81004359 81004359 G C PTPRQ Missense_Mutation p.E1621Q 0.08 tolerated(0.06) possibly_damaging(0.521) TCGA-DD-A1EE-01 12 81746949 81746949 G T PPFIA2 Missense_Mutation p.T648K 0.04 deleterious(0) probably_damaging(0.991) TCGA-DD-A1EE-01 12 8692481 8692481 G A CLEC4E Missense_Mutation p.L34F 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-DD-A1EE-01 12 88429335 88429335 C G C12orf29 5'UTR 0.55 TCGA-DD-A1EE-01 12 89916794 89916794 A C GALNT4 Missense_Mutation p.N511K 0.08 tolerated(0.41) benign(0.002) TCGA-DD-A1EE-01 12 95603522 95603522 G C FGD6 Missense_Mutation p.A513G 0.04 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EE-01 12 98938066 98938066 G A TMPO Missense_Mutation p.G241E 0.13 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 12 99117014 99117014 A G APAF1 Missense_Mutation p.H1043R 0.03 deleterious(0.05) possibly_damaging(0.838) TCGA-DD-A1EE-01 13 101717813 101717813 C T NALCN Missense_Mutation p.C1516Y 0.12 deleterious(0) probably_damaging(0.99) TCGA-DD-A1EE-01 13 111117937 111117937 G A COL4A2 Silent p.G654G 0.37 TCGA-DD-A1EE-01 13 35731313 35731313 A G NBEA Missense_Mutation p.Y917C 0.18 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EE-01 13 35756573 35756573 G A NBEA Missense_Mutation p.R1580H 0.08 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EE-01 13 36050192 36050192 G T MAB21L1 Silent p.A28A 0.09 TCGA-DD-A1EE-01 13 36050193 36050193 G T MAB21L1 Missense_Mutation p.A28D 0.10 tolerated(0.37) benign(0.14) TCGA-DD-A1EE-01 13 36229035 36229036 - C NBEA Frame_Shift_Ins p.D2673Rfs*17 0.15 TCGA-DD-A1EE-01 13 37399580 37399580 A G RFXAP Missense_Mutation p.I206V 0.08 tolerated_low_confidence(0.61) benign(0.078) TCGA-DD-A1EE-01 13 39265055 39265055 G T FREM2 Nonsense_Mutation p.E1192* 0.13 TCGA-DD-A1EE-01 13 39265478 39265478 G C FREM2 Missense_Mutation p.D1333H 0.15 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EE-01 13 42877120 42877120 C A AKAP11 Nonsense_Mutation p.S1413* 0.08 TCGA-DD-A1EE-01 13 48947605 48947606 - A RB1 Frame_Shift_Ins p.N399Kfs*7 0.15 TCGA-DD-A1EE-01 13 58207559 58207559 C T PCDH17 Silent p.L293L 0.11 TCGA-DD-A1EE-01 14 103174914 103174914 A G RCOR1 Missense_Mutation p.E258G 0.11 tolerated(0.36) possibly_damaging(0.84) TCGA-DD-A1EE-01 14 105419292 105419292 C A AHNAK2 Missense_Mutation p.K832N 0.40 possibly_damaging(0.683) TCGA-DD-A1EE-01 14 107048844 107048844 G A IGHV3-53 Missense_Mutation p.A59V 0.22 deleterious_low_confidence(0.02) benign(0.361) TCGA-DD-A1EE-01 14 20897958 20897958 G T KLHL33 Missense_Mutation p.L293I 0.08 deleterious(0.02) benign(0.068) TCGA-DD-A1EE-01 14 23866803 23866803 T A MYH6 Missense_Mutation p.K637N 0.13 deleterious(0.01) possibly_damaging(0.801) TCGA-DD-A1EE-01 14 26917704 26917704 G T NOVA1 Missense_Mutation p.L329I 0.10 tolerated(0.41) benign(0.027) TCGA-DD-A1EE-01 14 50915494 50915494 T C MAP4K5 Missense_Mutation p.M358V 0.15 tolerated(0.44) benign(0.026) TCGA-DD-A1EE-01 14 52456408 52456408 C T C14orf166 Silent p.F17F 0.08 TCGA-DD-A1EE-01 14 57070549 57070549 G A TMEM260 Missense_Mutation p.A121T 0.09 tolerated(0.06) possibly_damaging(0.867) TCGA-DD-A1EE-01 14 59820665 59820665 T A DAAM1 Missense_Mutation p.V790E 0.06 deleterious(0.01) probably_damaging(0.968) TCGA-DD-A1EE-01 14 59930780 59930780 T C GPR135 Missense_Mutation p.I389V 0.09 tolerated(0.44) benign(0.006) TCGA-DD-A1EE-01 14 60921835 60921835 C G C14orf39 Missense_Mutation p.V463L 0.06 tolerated(0.15) possibly_damaging(0.621) TCGA-DD-A1EE-01 14 62207716 62207716 A T HIF1A Missense_Mutation p.I659F 0.39 tolerated(0.71) benign(0.137) TCGA-DD-A1EE-01 14 64518635 64518635 G T SYNE2 Missense_Mutation p.L2668F 0.13 possibly_damaging(0.822) TCGA-DD-A1EE-01 14 70252897 70252897 A G SLC10A1 Missense_Mutation p.S162P 0.08 deleterious(0.02) possibly_damaging(0.854) TCGA-DD-A1EE-01 14 70883772 70883772 C A SYNJ2BP 5'Flank 0.49 TCGA-DD-A1EE-01 14 72190408 72190408 G A SIPA1L1 Missense_Mutation p.S1439N 0.14 tolerated(0.13) probably_damaging(0.914) TCGA-DD-A1EE-01 14 73159816 73159816 G A DPF3 Missense_Mutation p.S237F 0.10 deleterious(0.01) possibly_damaging(0.891) TCGA-DD-A1EE-01 14 75376302 75376303 - C RPS6KL1 Frame_Shift_Ins p.E405Gfs*62 0.10 TCGA-DD-A1EE-01 14 76668083 76668083 A G GPATCH2L Silent p.K446K 0.07 TCGA-DD-A1EE-01 14 77606003 77606003 G A ZDHHC22 Missense_Mutation p.L27F 0.17 tolerated(0.48) benign(0.002) TCGA-DD-A1EE-01 14 91338575 91338575 G C RPS6KA5 Missense_Mutation p.T751S 0.10 tolerated(0.67) possibly_damaging(0.899) TCGA-DD-A1EE-01 15 101550657 101550657 T C LRRK1 Missense_Mutation p.L331P 0.36 deleterious(0) probably_damaging(0.995) TCGA-DD-A1EE-01 15 22332398 22332398 A T RP11-69H14.6 RNA 0.20 TCGA-DD-A1EE-01 15 28446674 28446674 G C HERC2 Missense_Mutation p.S2548R 0.05 benign(0.206) TCGA-DD-A1EE-01 15 32928928 32928928 G A ARHGAP11A Missense_Mutation p.V652I 0.45 tolerated(0.75) benign(0.001) TCGA-DD-A1EE-01 15 35198872 35198872 G T AQR Missense_Mutation p.P569T 0.08 deleterious(0.01) probably_damaging(0.966) TCGA-DD-A1EE-01 15 40757537 40757537 T A BAHD1 Missense_Mutation p.L686M 0.11 tolerated(0.14) probably_damaging(0.989) TCGA-DD-A1EE-01 15 42028515 42028522 TTTGAGCA - MGA Frame_Shift_Del p.S1353Ifs*6 0.29 TCGA-DD-A1EE-01 15 43571883 43571883 C T TGM7 Missense_Mutation p.G540S 0.13 tolerated(0.23) possibly_damaging(0.521) TCGA-DD-A1EE-01 15 43749109 43749109 G C TP53BP1 Missense_Mutation p.P566R 0.04 tolerated(0.4) benign(0.008) TCGA-DD-A1EE-01 15 45408389 45408389 C A DUOXA2 Missense_Mutation p.S91R 0.11 deleterious(0) probably_damaging(0.996) TCGA-DD-A1EE-01 15 45884374 45884374 T A BLOC1S6 Missense_Mutation p.L42M 0.06 tolerated(0.16) possibly_damaging(0.632) TCGA-DD-A1EE-01 15 48063289 48063289 C A SEMA6D Missense_Mutation p.N843K 0.05 tolerated(0.05) benign(0.146) TCGA-DD-A1EE-01 15 49148299 49148299 G A SHC4 Missense_Mutation p.H365Y 0.06 deleterious(0.04) benign(0.055) TCGA-DD-A1EE-01 15 51791589 51791589 C G DMXL2 Missense_Mutation p.V1278L 0.09 tolerated(0.63) benign(0.012) TCGA-DD-A1EE-01 15 52251010 52251010 G T LEO1 Missense_Mutation p.Q392K 0.05 tolerated(0.18) benign(0.142) TCGA-DD-A1EE-01 15 52258056 52258056 G C LEO1 Missense_Mutation p.P235R 0.07 tolerated_low_confidence(0.32) benign(0.074) TCGA-DD-A1EE-01 15 52476791 52476791 T A GNB5 Missense_Mutation p.K28M 0.08 tolerated_low_confidence(0.09) benign(0.049) TCGA-DD-A1EE-01 15 54592572 54592572 G A UNC13C Splice_Site p.X1423_splice 0.05 TCGA-DD-A1EE-01 15 74277722 74277722 C A STOML1 Missense_Mutation p.A243S 0.14 deleterious(0.02) possibly_damaging(0.493) TCGA-DD-A1EE-01 15 77227917 77227917 G A RCN2 Missense_Mutation p.E101K 0.08 deleterious(0.03) possibly_damaging(0.887) TCGA-DD-A1EE-01 15 77241537 77241537 G T RCN2 Missense_Mutation p.D310Y 0.04 deleterious(0) benign(0.305) TCGA-DD-A1EE-01 15 77425574 77425574 C A PEAK1 Nonsense_Mutation p.E1284* 0.09 TCGA-DD-A1EE-01 15 77906599 77906599 G T LINGO1 Missense_Mutation p.F550L 0.38 tolerated(0.17) benign(0.013) TCGA-DD-A1EE-01 15 79588058 79588058 A G ANKRD34C 3'UTR 0.34 TCGA-DD-A1EE-01 15 80767490 80767490 T G ARNT2 Missense_Mutation p.L183R 0.19 deleterious(0) probably_damaging(0.928) TCGA-DD-A1EE-01 15 81589305 81589305 G A IL16 Missense_Mutation p.E647K 0.17 tolerated(0.29) benign(0.075) TCGA-DD-A1EE-01 15 81615246 81615246 C A STARD5 Missense_Mutation p.G48V 0.09 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 15 89074867 89074867 G A DET1 Missense_Mutation p.R35C 0.11 tolerated(0.08) benign(0.394) TCGA-DD-A1EE-01 15 90023512 90023512 G T RHCG Nonsense_Mutation p.S217* 0.08 TCGA-DD-A1EE-01 15 90799374 90799374 T A TTLL13 Missense_Mutation p.Y184N 0.10 deleterious(0.03) benign(0.059) TCGA-DD-A1EE-01 15 94901825 94901825 G C MCTP2 Missense_Mutation p.E429Q 0.13 deleterious(0.02) benign(0.158) TCGA-DD-A1EE-01 15 99023985 99023985 C G FAM169B Missense_Mutation p.V10L 0.07 deleterious(0.01) benign(0.002) TCGA-DD-A1EE-01 16 11944139 11944139 C A RSL1D1 Missense_Mutation p.R81I 0.47 deleterious(0) probably_damaging(0.936) TCGA-DD-A1EE-01 16 1816311 1816311 C G MAPK8IP3 Missense_Mutation p.P906R 0.21 tolerated(0.11) benign(0.012) TCGA-DD-A1EE-01 16 19049310 19049310 G T TMC7 Missense_Mutation p.G374W 0.14 deleterious(0.01) possibly_damaging(0.541) TCGA-DD-A1EE-01 16 2098719 2098719 C T TSC2 Nonsense_Mutation p.Q35* 0.05 TCGA-DD-A1EE-01 16 23489767 23489767 G A GGA2 Missense_Mutation p.P405L 0.10 tolerated(0.13) benign(0.001) TCGA-DD-A1EE-01 16 27448870 27448870 C A IL21R Missense_Mutation p.H72N 0.12 deleterious(0.01) benign(0.259) TCGA-DD-A1EE-01 16 27517278 27517278 G T GTF3C1 Missense_Mutation p.A571E 0.13 tolerated(1) benign(0.009) TCGA-DD-A1EE-01 16 28946809 28946809 G A CD19 Missense_Mutation p.A294T 0.07 tolerated(0.08) possibly_damaging(0.908) TCGA-DD-A1EE-01 16 30977205 30977205 G T SETD1A Missense_Mutation p.R668L 0.14 benign(0.079) TCGA-DD-A1EE-01 16 31072640 31072640 A T ZNF668 Missense_Mutation p.S560T 0.08 tolerated(0.68) benign(0.001) TCGA-DD-A1EE-01 16 46991020 46991020 C A DNAJA2 Missense_Mutation p.R387M 0.07 deleterious(0.01) probably_damaging(0.91) TCGA-DD-A1EE-01 16 53358701 53358701 T G CHD9 Missense_Mutation p.L2847R 0.31 unknown(0) TCGA-DD-A1EE-01 16 53878098 53878098 T A FTO Missense_Mutation p.H261Q 0.03 tolerated(0.65) benign(0.002) TCGA-DD-A1EE-01 16 58706093 58706093 G T SLC38A7 Missense_Mutation p.S313Y 0.13 deleterious(0) probably_damaging(0.959) TCGA-DD-A1EE-01 16 67432171 67432171 C G ZDHHC1 Missense_Mutation p.A291P 0.20 tolerated(0.06) benign(0.014) TCGA-DD-A1EE-01 16 71823203 71823203 G A AP1G1 Silent p.G60G 0.13 TCGA-DD-A1EE-01 16 71823204 71823204 C A AP1G1 Missense_Mutation p.G60V 0.13 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 16 72984568 72984568 C G ZFHX3 Missense_Mutation p.D1006H 0.39 probably_damaging(0.997) TCGA-DD-A1EE-01 16 75637056 75637056 T C ADAT1 Missense_Mutation p.K435E 0.08 deleterious(0) probably_damaging(0.929) TCGA-DD-A1EE-01 16 83991263 83991263 G A OSGIN1 5'UTR 0.05 TCGA-DD-A1EE-01 16 84229967 84229967 T A ADAD2 Missense_Mutation p.V588E 0.33 deleterious(0) probably_damaging(0.974) TCGA-DD-A1EE-01 17 11775087 11775087 A T DNAH9 Missense_Mutation p.Y3409F 0.22 benign(0.02) TCGA-DD-A1EE-01 17 11786904 11786904 C A DNAH9 Missense_Mutation p.S3603Y 0.09 possibly_damaging(0.702) TCGA-DD-A1EE-01 17 12819314 12819314 T A ARHGAP44 Missense_Mutation p.F125I 0.13 tolerated(0.37) benign(0.348) TCGA-DD-A1EE-01 17 21319098 21319098 G T KCNJ12 Silent p.L148L 0.18 TCGA-DD-A1EE-01 17 26851109 26851109 G T FOXN1 Missense_Mutation p.S41I 0.14 deleterious_low_confidence(0.01) benign(0.221) TCGA-DD-A1EE-01 17 32956067 32956067 C A TMEM132E Missense_Mutation p.D304E 0.05 deleterious(0.02) benign(0.365) TCGA-DD-A1EE-01 17 33469091 33469091 A G NLE1 Silent p.D23D 0.30 TCGA-DD-A1EE-01 17 34266279 34266279 C T LYZL6 Missense_Mutation p.A28T 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-DD-A1EE-01 17 39150290 39150290 G T KRTAP3-3 Nonsense_Mutation p.C20* 0.05 TCGA-DD-A1EE-01 17 40652840 40652840 G T ATP6V0A1 Missense_Mutation p.A606S 0.10 tolerated(0.08) possibly_damaging(0.659) TCGA-DD-A1EE-01 17 40946819 40946819 C G WNK4 Missense_Mutation p.H794D 0.32 tolerated(0.24) unknown(0) TCGA-DD-A1EE-01 17 40961398 40961398 C A CNTD1 Missense_Mutation p.Q280K 0.06 tolerated(0.3) benign(0.02) TCGA-DD-A1EE-01 17 42756228 42756228 C G CCDC43 Missense_Mutation p.R224P 0.07 deleterious(0) unknown(0) TCGA-DD-A1EE-01 17 42883077 42883077 C G GJC1 Missense_Mutation p.A37P 0.08 deleterious(0) possibly_damaging(0.898) TCGA-DD-A1EE-01 17 46136906 46136906 A T NFE2L1 Missense_Mutation p.Q741L 0.09 deleterious(0.01) benign(0.059) TCGA-DD-A1EE-01 17 48046980 48046980 C T DLX4 Missense_Mutation p.P50S 0.12 tolerated(0.38) benign(0.444) TCGA-DD-A1EE-01 17 48244792 48244792 G T SGCA Missense_Mutation p.R34L 0.05 tolerated(0.16) benign(0.055) TCGA-DD-A1EE-01 17 48614425 48614425 C T EPN3 Missense_Mutation p.R170C 0.16 deleterious(0.01) possibly_damaging(0.847) TCGA-DD-A1EE-01 17 48695290 48695290 G A CACNA1G Silent p.Q1742Q 0.37 TCGA-DD-A1EE-01 17 49067132 49067132 C T SPAG9 Missense_Mutation p.D907N 0.40 tolerated(0.28) benign(0.392) TCGA-DD-A1EE-01 17 52991114 52991114 G C TOM1L1 Missense_Mutation p.W126C 0.06 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 17 57288227 57288227 A G SMG8 Missense_Mutation p.N272S 0.14 tolerated(0.41) benign(0.024) TCGA-DD-A1EE-01 17 58013587 58013587 A T RPS6KB1 Missense_Mutation p.R330S 0.10 deleterious(0) probably_damaging(0.96) TCGA-DD-A1EE-01 17 61784645 61784645 T C STRADA Missense_Mutation p.K239E 0.10 tolerated(0.32) possibly_damaging(0.626) TCGA-DD-A1EE-01 17 61890756 61890756 G T DDX42 Missense_Mutation p.R615L 0.07 deleterious(0.01) probably_damaging(0.971) TCGA-DD-A1EE-01 17 61908431 61908431 C T PSMC5 Missense_Mutation p.R239W 0.08 deleterious(0) probably_damaging(0.982) TCGA-DD-A1EE-01 17 61957832 61957832 G T GH2 Silent p.V252V 0.04 TCGA-DD-A1EE-01 17 7097812 7097812 G A DLG4 Missense_Mutation p.A478V 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-DD-A1EE-01 17 7216697 7216697 A G GPS2 Splice_Site p.X242_splice 0.11 TCGA-DD-A1EE-01 17 72343926 72343926 G A KIF19 Missense_Mutation p.G312E 0.11 deleterious(0) probably_damaging(0.98) TCGA-DD-A1EE-01 17 72344027 72344027 A G KIF19 Missense_Mutation p.I346V 0.14 deleterious(0) probably_damaging(0.998) TCGA-DD-A1EE-01 17 72998268 72998268 C T CDR2L Missense_Mutation p.R151C 0.11 deleterious(0) possibly_damaging(0.821) TCGA-DD-A1EE-01 17 7339378 7339378 C T TMEM102 Missense_Mutation p.A63V 0.17 deleterious(0) probably_damaging(0.914) TCGA-DD-A1EE-01 17 73851333 73851333 T C WBP2 Missense_Mutation p.N16D 0.23 tolerated(0.1) benign(0.05) TCGA-DD-A1EE-01 17 73916170 73916170 C G FBF1 Missense_Mutation p.E602Q 0.42 deleterious(0) probably_damaging(0.998) TCGA-DD-A1EE-01 17 74383503 74383503 C G SPHK1 Missense_Mutation p.P417A 0.12 deleterious(0.02) probably_damaging(0.953) TCGA-DD-A1EE-01 17 7577107 7577107 A T TP53 Nonsense_Mutation p.C277* 0.12 TCGA-DD-A1EE-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.12 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 17 7578449 7578449 C A TP53 Missense_Mutation p.A161S 0.12 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 17 77075681 77075681 G C ENGASE Missense_Mutation p.W176S 0.08 deleterious(0) probably_damaging(0.928) TCGA-DD-A1EE-01 17 77077980 77077980 G T ENGASE Missense_Mutation p.R291S 0.09 deleterious(0.03) possibly_damaging(0.461) TCGA-DD-A1EE-01 17 7734001 7734001 A G DNAH2 Missense_Mutation p.Y4024C 0.12 probably_damaging(1) TCGA-DD-A1EE-01 17 78091993 78091993 G T GAA Missense_Mutation p.G828V 0.18 tolerated(0.26) benign(0.004) TCGA-DD-A1EE-01 17 80051491 80051491 A G FASN Missense_Mutation p.F146S 0.08 deleterious(0) probably_damaging(0.961) TCGA-DD-A1EE-01 17 80115731 80115731 G A CCDC57 Nonsense_Mutation p.Q712* 0.07 TCGA-DD-A1EE-01 18 12691398 12691398 C A CEP76 Missense_Mutation p.R298L 0.08 deleterious(0) probably_damaging(0.997) TCGA-DD-A1EE-01 18 13056654 13056654 C T CEP192 Silent p.N1355N 0.40 TCGA-DD-A1EE-01 18 13612553 13612553 C T LDLRAD4 Intron 0.50 TCGA-DD-A1EE-01 18 2925247 2925247 G C LPIN2 Missense_Mutation p.S638C 0.05 deleterious(0) possibly_damaging(0.897) TCGA-DD-A1EE-01 18 31314285 31314285 C T ASXL3 Missense_Mutation p.P330S 0.04 probably_damaging(1) TCGA-DD-A1EE-01 18 40854035 40854035 T A SYT4 Missense_Mutation p.N120I 0.04 tolerated(0.25) benign(0.002) TCGA-DD-A1EE-01 18 52556472 52556472 C A RAB27B Missense_Mutation p.T162K 0.07 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EE-01 18 61067824 61067824 T C VPS4B Missense_Mutation p.I199M 0.07 deleterious(0) possibly_damaging(0.604) TCGA-DD-A1EE-01 18 63430104 63430104 G T CDH7 Missense_Mutation p.C9F 0.07 tolerated(0.06) benign(0.125) TCGA-DD-A1EE-01 18 9859227 9859227 C A RAB31 Missense_Mutation p.R165S 0.17 deleterious(0.01) benign(0.135) TCGA-DD-A1EE-01 19 10381826 10381826 C T ICAM1 5'UTR 0.31 TCGA-DD-A1EE-01 19 1051263 1051263 A T ABCA7 Nonsense_Mutation p.K932* 0.12 TCGA-DD-A1EE-01 19 11141502 11141502 G A SMARCA4 Missense_Mutation p.G1160E 0.18 probably_damaging(1) TCGA-DD-A1EE-01 19 11942428 11942428 G A ZNF440 Missense_Mutation p.C146Y 0.38 deleterious(0.01) possibly_damaging(0.467) TCGA-DD-A1EE-01 19 16989085 16989085 G - SIN3B Frame_Shift_Del p.V1048Wfs*22 0.20 TCGA-DD-A1EE-01 19 17369122 17369122 G C USHBP1 Silent p.A373A 0.39 TCGA-DD-A1EE-01 19 17950393 17950393 C T JAK3 Missense_Mutation p.R445Q 0.14 tolerated(0.22) benign(0.007) TCGA-DD-A1EE-01 19 23545393 23545393 C A ZNF91 Missense_Mutation p.D130Y 0.11 tolerated(1) possibly_damaging(0.908) TCGA-DD-A1EE-01 19 30476164 30476164 G A URI1 Missense_Mutation p.E63K 0.30 tolerated(0.07) benign(0.188) TCGA-DD-A1EE-01 19 33134347 33134347 T A ANKRD27 Missense_Mutation p.Q210L 0.53 tolerated(0.28) benign(0.069) TCGA-DD-A1EE-01 19 33167297 33167297 C T RGS9BP Missense_Mutation p.T43M 0.31 deleterious(0.02) possibly_damaging(0.492) TCGA-DD-A1EE-01 19 34791740 34791740 A C KIAA0355 Missense_Mutation p.Q121P 0.11 deleterious_low_confidence(0.01) probably_damaging(0.923) TCGA-DD-A1EE-01 19 36019030 36019030 C A SBSN Missense_Mutation p.D52Y 0.20 deleterious(0) probably_damaging(0.929) TCGA-DD-A1EE-01 19 37879212 37879212 G T ZNF527 Missense_Mutation p.W87C 0.07 tolerated(0.06) probably_damaging(0.991) TCGA-DD-A1EE-01 19 38378502 38378502 C A WDR87 Nonsense_Mutation p.E1898* 0.06 TCGA-DD-A1EE-01 19 38378503 38378503 C G WDR87 Missense_Mutation p.Q1897H 0.05 possibly_damaging(0.643) TCGA-DD-A1EE-01 19 40366097 40366097 C T FCGBP Missense_Mutation p.A4713T 0.12 probably_damaging(0.973) TCGA-DD-A1EE-01 19 40715117 40715117 G A MAP3K10 Missense_Mutation p.A515T 0.47 deleterious(0) possibly_damaging(0.783) TCGA-DD-A1EE-01 19 42300660 42300660 G A CEACAM3 Silent p.G17G 0.44 TCGA-DD-A1EE-01 19 43983597 43983597 C A PHLDB3 Missense_Mutation p.R545L 0.09 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 19 46202122 46202122 C T QPCTL Missense_Mutation p.R284C 0.07 deleterious(0.01) possibly_damaging(0.868) TCGA-DD-A1EE-01 19 46321291 46321291 T G SYMPK Missense_Mutation p.I1003L 0.48 tolerated(0.12) possibly_damaging(0.454) TCGA-DD-A1EE-01 19 4682767 4682767 G A DPP9 Silent p.N805N 0.11 TCGA-DD-A1EE-01 19 49573841 49573841 G A KCNA7 Missense_Mutation p.R284C 0.13 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 19 50482384 50482384 T C VRK3 Silent p.P464P 0.33 TCGA-DD-A1EE-01 19 51530742 51530742 T C KLK11 Missense_Mutation p.K11R 0.13 tolerated_low_confidence(0.74) benign(0.01) TCGA-DD-A1EE-01 19 52001391 52001391 C A SIGLEC12 Missense_Mutation p.G429V 0.08 deleterious(0.01) probably_damaging(0.968) TCGA-DD-A1EE-01 19 52443518 52443518 C G ZNF613 Silent p.L24L 0.36 TCGA-DD-A1EE-01 19 53761997 53761997 C A VN1R2 Silent p.S123S 0.46 TCGA-DD-A1EE-01 19 54602893 54602893 C A OSCAR Splice_Site p.X24_splice 0.10 TCGA-DD-A1EE-01 19 54760149 54760149 C T LILRB5 Missense_Mutation p.G138R 0.08 tolerated(0.09) possibly_damaging(0.58) TCGA-DD-A1EE-01 19 55716907 55716907 C A PTPRH Missense_Mutation p.A136S 0.04 unknown(0) TCGA-DD-A1EE-01 19 57723477 57723477 A G ZNF264 Missense_Mutation p.S338G 0.20 tolerated(0.05) benign(0.012) TCGA-DD-A1EE-01 19 57723567 57723567 G T ZNF264 Nonsense_Mutation p.E368* 0.13 TCGA-DD-A1EE-01 19 9002558 9002558 G T MUC16 Missense_Mutation p.H13420N 0.12 probably_damaging(0.922) TCGA-DD-A1EE-01 19 9087113 9087113 T C MUC16 Missense_Mutation p.T1568A 0.09 unknown(0) TCGA-DD-A1EE-01 19 9324856 9324856 G T OR7D4 Missense_Mutation p.Q220K 0.07 tolerated(0.93) benign(0.03) TCGA-DD-A1EE-01 19 9324879 9324879 G T OR7D4 Missense_Mutation p.A212D 0.11 deleterious(0.01) benign(0.222) TCGA-DD-A1EE-01 19 9949168 9949168 G T PIN1 Missense_Mutation p.G39C 0.09 deleterious(0.01) probably_damaging(0.994) TCGA-DD-A1EE-01 1 102312570 102312570 T C OLFM3 Intron 0.38 TCGA-DD-A1EE-01 1 109339272 109339272 T A STXBP3 Missense_Mutation p.I427N 0.04 deleterious(0.02) possibly_damaging(0.583) TCGA-DD-A1EE-01 1 11119332 11119332 G A SRM Nonsense_Mutation p.Q80* 0.04 TCGA-DD-A1EE-01 1 116933025 116933025 A C ATP1A1 Missense_Mutation p.N405T 0.10 tolerated(0.16) benign(0.027) TCGA-DD-A1EE-01 1 12677249 12677249 G T DHRS3 Missense_Mutation p.D35E 0.37 deleterious(0) possibly_damaging(0.516) TCGA-DD-A1EE-01 1 149858545 149858545 A T HIST2H2AC Missense_Mutation p.Q7H 0.26 deleterious_low_confidence(0.01) unknown(0) TCGA-DD-A1EE-01 1 151108527 151108527 G T SEMA6C Missense_Mutation p.P407T 0.04 deleterious(0) possibly_damaging(0.825) TCGA-DD-A1EE-01 1 151499552 151499552 G T CGN Missense_Mutation p.G622V 0.09 tolerated(0.3) benign(0.006) TCGA-DD-A1EE-01 1 152057483 152057486 CTCT - TCHHL1 Frame_Shift_Del p.E891Gfs*94 0.19 TCGA-DD-A1EE-01 1 152692324 152692324 C T C1orf68 Silent p.Y109Y 0.11 TCGA-DD-A1EE-01 1 153314164 153314164 C A PGLYRP4 Missense_Mutation p.Q188H 0.11 deleterious(0.01) probably_damaging(1) TCGA-DD-A1EE-01 1 154988092 154988092 G A ZBTB7B Missense_Mutation p.S353N 0.05 tolerated(0.08) possibly_damaging(0.542) TCGA-DD-A1EE-01 1 156939122 156939122 C A ARHGEF11 Silent p.G259G 0.49 TCGA-DD-A1EE-01 1 158605719 158605719 C G SPTA1 Missense_Mutation p.E1806Q 0.05 tolerated(0.64) possibly_damaging(0.861) TCGA-DD-A1EE-01 1 158651408 158651408 G A SPTA1 Missense_Mutation p.T147I 0.40 tolerated(0.42) possibly_damaging(0.698) TCGA-DD-A1EE-01 1 16073479 16073479 T A TMEM82 Missense_Mutation p.L292H 0.10 deleterious(0) probably_damaging(0.946) TCGA-DD-A1EE-01 1 167086745 167086745 C T DUSP27 Missense_Mutation p.A129V 0.15 deleterious(0.04) benign(0.03) TCGA-DD-A1EE-01 1 175956209 175956209 T C RFWD2 Missense_Mutation p.Y668C 0.05 deleterious(0.01) benign(0.124) TCGA-DD-A1EE-01 1 179561759 179561759 A G TDRD5 Silent p.E3E 0.38 TCGA-DD-A1EE-01 1 179603595 179603595 A T TDRD5 Missense_Mutation p.Q377L 0.04 tolerated(0.06) benign(0.02) TCGA-DD-A1EE-01 1 181548355 181548355 A T CACNA1E Missense_Mutation p.N255I 0.04 tolerated(0.14) benign(0.018) TCGA-DD-A1EE-01 1 182823304 182823304 A G DHX9 Missense_Mutation p.D206G 0.05 deleterious(0) probably_damaging(0.982) TCGA-DD-A1EE-01 1 182852382 182852382 A T DHX9 Missense_Mutation p.E1008V 0.05 deleterious(0.04) probably_damaging(0.946) TCGA-DD-A1EE-01 1 186007150 186007150 C A HMCN1 Missense_Mutation p.A1945D 0.41 benign(0.16) TCGA-DD-A1EE-01 1 198682088 198682088 G C PTPRC Missense_Mutation p.G393A 0.04 tolerated(0.58) benign(0.035) TCGA-DD-A1EE-01 1 200635118 200635118 A T DDX59 Missense_Mutation p.S251T 0.03 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 1 200946358 200946358 C A KIF21B Missense_Mutation p.R1436L 0.07 deleterious(0) probably_damaging(0.998) TCGA-DD-A1EE-01 1 204438107 204438107 G A PIK3C2B Missense_Mutation p.A275V 0.04 deleterious(0.02) benign(0.301) TCGA-DD-A1EE-01 1 206820946 206820946 G T DYRK3 Missense_Mutation p.A135S 0.08 tolerated(0.74) benign(0.014) TCGA-DD-A1EE-01 1 209789918 209789918 G A LAMB3 Nonsense_Mutation p.Q1094* 0.06 TCGA-DD-A1EE-01 1 21889674 21889674 C A ALPL Silent p.A123A 0.43 TCGA-DD-A1EE-01 1 220356254 220356254 C G RAB3GAP2 Missense_Mutation p.R673T 0.04 tolerated(0.54) benign(0.316) TCGA-DD-A1EE-01 1 222705320 222705320 C G HHIPL2 Missense_Mutation p.E571Q 0.09 deleterious(0) probably_damaging(0.985) TCGA-DD-A1EE-01 1 223568584 223568584 C T C1orf65 Silent p.L589L 0.30 TCGA-DD-A1EE-01 1 224619473 224619473 C A WDR26 Missense_Mutation p.D145Y 0.04 deleterious(0) possibly_damaging(0.711) TCGA-DD-A1EE-01 1 225332286 225332286 C A DNAH14 Missense_Mutation p.P644T 0.08 deleterious(0) probably_damaging(0.991) TCGA-DD-A1EE-01 1 227216748 227216748 C G CDC42BPA Missense_Mutation p.A1313P 0.09 tolerated(0.39) benign(0.003) TCGA-DD-A1EE-01 1 228474710 228474710 G T OBSCN Missense_Mutation p.A3601S 0.13 benign(0.396) TCGA-DD-A1EE-01 1 228495849 228495849 G T OBSCN Silent p.A5125A 0.43 TCGA-DD-A1EE-01 1 232650005 232650005 C A SIPA1L2 Missense_Mutation p.A361S 0.04 deleterious(0) probably_damaging(0.997) TCGA-DD-A1EE-01 1 235318339 235318339 C A RBM34 Missense_Mutation p.V152L 0.08 tolerated(0.48) benign(0.062) TCGA-DD-A1EE-01 1 238048491 238048491 C A ZP4 Missense_Mutation p.V429L 0.25 tolerated(0.24) benign(0.005) TCGA-DD-A1EE-01 1 240071656 240071656 G T CHRM3 Missense_Mutation p.R302L 0.16 tolerated(0.09) benign(0.008) TCGA-DD-A1EE-01 1 242045224 242045224 G A EXO1 Missense_Mutation p.D706N 0.03 tolerated(0.06) benign(0.014) TCGA-DD-A1EE-01 1 243327863 243327876 AGAACTTGTTGTGG - CEP170 Frame_Shift_Del p.S1129Yfs*10 0.09 TCGA-DD-A1EE-01 1 246923373 246923373 A T SCCPDH Missense_Mutation p.I310L 0.03 tolerated(1) benign(0.001) TCGA-DD-A1EE-01 1 247615107 247615107 G T OR2B11 Missense_Mutation p.H60N 0.04 deleterious(0.03) benign(0.016) TCGA-DD-A1EE-01 1 247615108 247615108 G T OR2B11 Silent p.L59L 0.04 TCGA-DD-A1EE-01 1 2520399 2520399 C G FAM213B Missense_Mutation p.P197A 0.19 tolerated(0.18) possibly_damaging(0.835) TCGA-DD-A1EE-01 1 2535696 2535696 T C MMEL1 Missense_Mutation p.M281V 0.11 deleterious(0) probably_damaging(0.92) TCGA-DD-A1EE-01 1 25558651 25558651 C A SYF2 Missense_Mutation p.A26S 0.18 tolerated(0.22) possibly_damaging(0.739) TCGA-DD-A1EE-01 1 27087894 27087898 GCCAC - ARID1A Frame_Shift_Del p.P728Qfs*87 0.10 TCGA-DD-A1EE-01 1 27739169 27739169 C T WASF2 Missense_Mutation p.V241M 0.09 tolerated(0.39) unknown(0) TCGA-DD-A1EE-01 1 28800595 28800595 C G PHACTR4 Missense_Mutation p.S461R 0.08 tolerated(0.12) benign(0.272) TCGA-DD-A1EE-01 1 2938475 2938475 C T ACTRT2 Silent p.F75F 0.11 TCGA-DD-A1EE-01 1 31538548 31538548 C T PUM1 5'Flank 0.25 TCGA-DD-A1EE-01 1 3342300 3342300 A T PRDM16 Missense_Mutation p.H1032L 0.06 tolerated(0.09) benign(0.097) TCGA-DD-A1EE-01 1 36788575 36788575 G C EVA1B Missense_Mutation p.R22G 0.09 tolerated(0.18) probably_damaging(0.992) TCGA-DD-A1EE-01 1 38453345 38453345 C T SF3A3 Missense_Mutation p.R68Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EE-01 1 43201511 43201511 G T CLDN19 Intron 0.23 TCGA-DD-A1EE-01 1 46488584 46488584 A G MAST2 Missense_Mutation p.M476V 0.08 tolerated_low_confidence(0.2) benign(0.002) TCGA-DD-A1EE-01 1 52254983 52254983 A G NRD1 Silent p.C1195C 0.32 TCGA-DD-A1EE-01 1 57349332 57349339 AATTAAAC - C8A Frame_Shift_Del p.L279Vfs*2 0.23 TCGA-DD-A1EE-01 1 66723358 66723358 T G PDE4B Missense_Mutation p.F169V 0.09 deleterious(0) possibly_damaging(0.698) TCGA-DD-A1EE-01 1 74671212 74671212 G T FPGT Missense_Mutation p.G494V 0.05 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EE-01 1 9305494 9305494 G A H6PD Nonsense_Mutation p.W167* 0.17 TCGA-DD-A1EE-01 20 1532400 1532400 A G SIRPD Missense_Mutation p.F120L 0.12 tolerated(0.08) benign(0.306) TCGA-DD-A1EE-01 20 16316592 16316592 T C KIF16B Silent p.T415T 0.48 TCGA-DD-A1EE-01 20 23345190 23345190 G A GZF1 Missense_Mutation p.S57N 0.13 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 20 31825552 31825552 G A BPIFA1 Missense_Mutation p.G12E 0.37 deleterious(0.01) possibly_damaging(0.567) TCGA-DD-A1EE-01 20 33598060 33598060 G C TRPC4AP Missense_Mutation p.L481V 0.09 deleterious(0.02) possibly_damaging(0.519) TCGA-DD-A1EE-01 20 34130635 34130635 C A ERGIC3 Missense_Mutation p.F104L 0.12 tolerated(0.06) benign(0.014) TCGA-DD-A1EE-01 20 37154091 37154091 G C RALGAPB Missense_Mutation p.R611P 0.04 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EE-01 20 39792450 39792451 - T PLCG1 Frame_Shift_Ins p.W330Lfs*18 0.10 TCGA-DD-A1EE-01 20 4202228 4202228 G T ADRA1D Missense_Mutation p.A554D 0.14 tolerated_low_confidence(0.09) benign(0.022) TCGA-DD-A1EE-01 20 4202229 4202229 C T ADRA1D Missense_Mutation p.A554T 0.15 tolerated_low_confidence(0.63) benign(0) TCGA-DD-A1EE-01 20 45004003 45004003 T C ELMO2 Missense_Mutation p.R313G 0.08 deleterious(0.01) possibly_damaging(0.901) TCGA-DD-A1EE-01 20 50346419 50346419 T A ATP9A Missense_Mutation p.N56I 0.09 deleterious(0) probably_damaging(0.995) TCGA-DD-A1EE-01 20 55840845 55840845 T A BMP7 Missense_Mutation p.S112C 0.14 deleterious(0.01) possibly_damaging(0.799) TCGA-DD-A1EE-01 20 57246217 57246217 C A STX16 Missense_Mutation p.T219K 0.04 deleterious(0) benign(0.334) TCGA-DD-A1EE-01 20 58560154 58560154 C A CDH26 Missense_Mutation p.N269K 0.12 deleterious(0) probably_damaging(0.99) TCGA-DD-A1EE-01 20 60293886 60293886 C G RP11-429E11.3 Missense_Mutation p.R114P 0.39 possibly_damaging(0.516) TCGA-DD-A1EE-01 20 61835099 61835099 C G YTHDF1 Missense_Mutation p.G65R 0.29 deleterious(0.01) probably_damaging(0.913) TCGA-DD-A1EE-01 20 61938948 61938948 C - COL20A1 Frame_Shift_Del p.L202Wfs*17 0.27 TCGA-DD-A1EE-01 20 62737266 62737266 C T NPBWR2 Missense_Mutation p.A307T 0.11 tolerated(0.39) benign(0.019) TCGA-DD-A1EE-01 20 9401994 9401994 G T PLCB4 Missense_Mutation p.E723D 0.09 deleterious(0) probably_damaging(0.998) TCGA-DD-A1EE-01 21 31744410 31744410 C A KRTAP13-2 Missense_Mutation p.C41F 0.06 tolerated(0.1) possibly_damaging(0.493) TCGA-DD-A1EE-01 21 31973499 31973499 C A KRTAP22-1 Nonsense_Mutation p.C20* 0.33 TCGA-DD-A1EE-01 21 33296847 33296847 G A HUNK Missense_Mutation p.R110Q 0.13 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 21 34925206 34925206 T A SON Silent p.P1223P 0.42 TCGA-DD-A1EE-01 21 38538901 38538901 A G TTC3 Missense_Mutation p.Q1462R 0.09 tolerated(1) benign(0.002) TCGA-DD-A1EE-01 21 39086700 39086700 G A KCNJ6 Missense_Mutation p.P254S 0.04 deleterious(0) probably_damaging(0.984) TCGA-DD-A1EE-01 21 45094517 45094517 C A RRP1B Missense_Mutation p.L120M 0.06 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 22 19223332 19223332 C G CLTCL1 Missense_Mutation p.D286H 0.06 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 22 20385730 20385730 A C PI4KAP1 RNA 0.32 TCGA-DD-A1EE-01 22 20784723 20784723 C T SCARF2 Missense_Mutation p.G399R 0.32 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 22 26688528 26688528 T C SEZ6L Missense_Mutation p.V84A 0.15 tolerated_low_confidence(0.1) benign(0.005) TCGA-DD-A1EE-01 22 30069414 30069414 G T NF2 Nonsense_Mutation p.E427* 0.05 TCGA-DD-A1EE-01 22 31533849 31533849 T A PLA2G3 Nonsense_Mutation p.K305* 0.11 TCGA-DD-A1EE-01 22 31534717 31534717 G T PLA2G3 Missense_Mutation p.Q195K 0.05 deleterious(0) possibly_damaging(0.74) TCGA-DD-A1EE-01 22 32480421 32480437 TCCAGCTTTTCACGAAG - SLC5A1 Splice_Site p.X222_splice 0.30 TCGA-DD-A1EE-01 22 35717981 35717981 A G TOM1 Missense_Mutation p.K56R 0.04 deleterious(0.03) probably_damaging(0.996) TCGA-DD-A1EE-01 22 35796490 35796490 A G MCM5 Missense_Mutation p.Q20R 0.06 tolerated(0.51) benign(0.001) TCGA-DD-A1EE-01 22 38120914 38120914 A G TRIOBP Missense_Mutation p.N784S 0.10 tolerated_low_confidence(0.12) benign(0.009) TCGA-DD-A1EE-01 22 38696748 38696748 G C CSNK1E Missense_Mutation p.I182M 0.04 tolerated_low_confidence(0.13) possibly_damaging(0.775) TCGA-DD-A1EE-01 22 40343142 40343142 C A GRAP2 Missense_Mutation p.A11D 0.03 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EE-01 22 41560092 41560092 A T EP300 Missense_Mutation p.H1255L 0.09 probably_damaging(0.999) TCGA-DD-A1EE-01 22 41928119 41928119 G T POLR3H Nonsense_Mutation p.S113* 0.48 TCGA-DD-A1EE-01 22 50316298 50316298 A T CRELD2 Missense_Mutation p.N260Y 0.50 deleterious(0) possibly_damaging(0.659) TCGA-DD-A1EE-01 22 50439551 50439551 G C IL17REL Missense_Mutation p.C23W 0.11 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 22 50636557 50636557 C G TRABD Missense_Mutation p.H300D 0.32 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 2 101885756 101885756 A T CNOT11 Missense_Mutation p.I472L 0.09 deleterious(0.05) probably_damaging(0.935) TCGA-DD-A1EE-01 2 105924415 105924415 C A TGFBRAP1 Missense_Mutation p.R115L 0.12 deleterious(0) probably_damaging(0.916) TCGA-DD-A1EE-01 2 109380318 109380318 G T RANBP2 Missense_Mutation p.G1108V 0.04 deleterious(0) benign(0.066) TCGA-DD-A1EE-01 2 109381074 109381074 G A RANBP2 Missense_Mutation p.S1360N 0.10 tolerated(0.34) benign(0.285) TCGA-DD-A1EE-01 2 11053487 11053487 C T KCNF1 Missense_Mutation p.T312I 0.05 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 2 128474768 128474768 G T WDR33 Missense_Mutation p.P944T 0.12 deleterious_low_confidence(0.03) benign(0.092) TCGA-DD-A1EE-01 2 133547663 133547663 C A NCKAP5 Missense_Mutation p.S342I 0.10 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EE-01 2 1497607 1497607 C A TPO Missense_Mutation p.P601H 0.12 deleterious(0) probably_damaging(0.928) TCGA-DD-A1EE-01 2 152732958 152732958 C G CACNB4 Missense_Mutation p.R168T 0.10 tolerated(0.18) benign(0.357) TCGA-DD-A1EE-01 2 153573934 153573934 C A PRPF40A Missense_Mutation p.R7L 0.17 tolerated_low_confidence(0.24) benign(0.25) TCGA-DD-A1EE-01 2 154800907 154800907 T C GALNT13 Intron 0.37 TCGA-DD-A1EE-01 2 155555841 155555841 C A KCNJ3 Missense_Mutation p.S185Y 0.10 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 2 157186659 157186659 C T NR4A2 Missense_Mutation p.G14R 0.10 deleterious(0.01) probably_damaging(1) TCGA-DD-A1EE-01 2 160737645 160737645 C A LY75-CD302 Missense_Mutation p.E451D 0.07 deleterious(0.01) probably_damaging(0.953) TCGA-DD-A1EE-01 2 160737646 160737646 T A LY75-CD302 Missense_Mutation p.E451V 0.07 deleterious(0) probably_damaging(0.978) TCGA-DD-A1EE-01 2 160833216 160833216 A G PLA2R1 Missense_Mutation p.I806T 0.07 tolerated(0.35) benign(0.211) TCGA-DD-A1EE-01 2 166211045 166211045 A G SCN2A Missense_Mutation p.D1088G 0.06 tolerated(0.06) possibly_damaging(0.72) TCGA-DD-A1EE-01 2 170344622 170344622 C A BBS5 Missense_Mutation p.H128Q 0.33 tolerated(0.14) probably_damaging(0.967) TCGA-DD-A1EE-01 2 175624066 175624066 A T CHRNA1 Missense_Mutation p.L76Q 0.06 deleterious(0) probably_damaging(0.994) TCGA-DD-A1EE-01 2 177017653 177017653 G C HOXD4 Missense_Mutation p.D251H 0.10 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-DD-A1EE-01 2 191155206 191155206 A C HIBCH Missense_Mutation p.S104A 0.12 tolerated(0.6) benign(0) TCGA-DD-A1EE-01 2 192160953 192160953 G T MYO1B Splice_Site p.X84_splice 0.41 TCGA-DD-A1EE-01 2 196593015 196593015 C A SLC39A10 Missense_Mutation p.T760K 0.14 deleterious(0) probably_damaging(0.998) TCGA-DD-A1EE-01 2 196825086 196825086 A G DNAH7 Missense_Mutation p.L930S 0.11 deleterious(0) probably_damaging(0.976) TCGA-DD-A1EE-01 2 198267360 198267360 T G SF3B1 Missense_Mutation p.K666T 0.08 deleterious(0) probably_damaging(0.994) TCGA-DD-A1EE-01 2 207530732 207530732 G T DYTN Missense_Mutation p.N334K 0.09 tolerated(0.06) benign(0.008) TCGA-DD-A1EE-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.06 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-DD-A1EE-01 2 21231053 21231053 G A APOB Missense_Mutation p.P2896L 0.05 probably_damaging(0.997) TCGA-DD-A1EE-01 2 212615384 212615384 G T ERBB4 Missense_Mutation p.T201K 0.13 tolerated(0.15) benign(0.001) TCGA-DD-A1EE-01 2 215823013 215823013 G T ABCA12 Missense_Mutation p.F2035L 0.11 deleterious(0.03) benign(0.439) TCGA-DD-A1EE-01 2 215843664 215843664 C T ABCA12 Missense_Mutation p.G1614E 0.07 deleterious(0) probably_damaging(0.998) TCGA-DD-A1EE-01 2 225266346 225266346 C G FAM124B Missense_Mutation p.R47P 0.22 deleterious(0) probably_damaging(0.935) TCGA-DD-A1EE-01 2 228560620 228560620 A G SLC19A3 Missense_Mutation p.L386P 0.41 deleterious(0) probably_damaging(0.997) TCGA-DD-A1EE-01 2 232373893 232373893 C A LINC00471 RNA 0.31 TCGA-DD-A1EE-01 2 234394446 234394446 G A USP40 Silent p.P1136P 0.40 TCGA-DD-A1EE-01 2 238249117 238249117 C T COL6A3 Silent p.R2814R 0.44 TCGA-DD-A1EE-01 2 24194229 24194229 A T UBXN2A Missense_Mutation p.E42V 0.11 deleterious(0) possibly_damaging(0.883) TCGA-DD-A1EE-01 2 27528584 27528584 G C TRIM54 Missense_Mutation p.G290R 0.20 deleterious(0.02) possibly_damaging(0.825) TCGA-DD-A1EE-01 2 29075273 29075273 C T TRMT61B Splice_Site p.X362_splice 0.07 TCGA-DD-A1EE-01 2 31165150 31165150 C A GALNT14 Missense_Mutation p.G288V 0.38 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 2 31165151 31165151 C A GALNT14 Missense_Mutation p.G288W 0.38 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 2 38976737 38976737 T C SRSF7 Missense_Mutation p.Y107C 0.06 deleterious(0) probably_damaging(0.998) TCGA-DD-A1EE-01 2 44053584 44053584 T G ABCG5 Missense_Mutation p.E237D 0.07 tolerated(0.21) benign(0.128) TCGA-DD-A1EE-01 2 54855371 54855371 C G SPTBN1 Missense_Mutation p.F594L 0.09 deleterious(0) possibly_damaging(0.794) TCGA-DD-A1EE-01 2 55582881 55582881 T C CCDC88A Missense_Mutation p.I212V 0.16 tolerated(1) benign(0.001) TCGA-DD-A1EE-01 2 63824634 63824634 T A MDH1 Missense_Mutation p.L119I 0.40 deleterious(0) probably_damaging(0.998) TCGA-DD-A1EE-01 2 66667100 66667100 C A MEIS1 Missense_Mutation p.A122D 0.07 tolerated(0.05) possibly_damaging(0.641) TCGA-DD-A1EE-01 2 70066643 70066643 A G GMCL1 Missense_Mutation p.I147V 0.04 tolerated(0.57) benign(0.004) TCGA-DD-A1EE-01 2 70408657 70408657 G A C2orf42 Missense_Mutation p.S154L 0.54 deleterious(0) probably_damaging(0.94) TCGA-DD-A1EE-01 2 71047619 71047619 G T CLEC4F Missense_Mutation p.Q13K 0.16 deleterious(0.01) possibly_damaging(0.687) TCGA-DD-A1EE-01 2 86259502 86259502 C A POLR1A Nonsense_Mutation p.E1389* 0.26 TCGA-DD-A1EE-01 2 90229476 90229476 G T IGKV1D-42 Missense_Mutation p.S99I 0.43 deleterious(0.01) possibly_damaging(0.83) TCGA-DD-A1EE-01 3 101283884 101283884 G A TRMT10C Missense_Mutation p.D87N 0.10 deleterious(0.02) benign(0.023) TCGA-DD-A1EE-01 3 10443888 10443888 C A ATP2B2 Missense_Mutation p.G181V 0.13 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 3 107937444 107937444 T C IFT57 Silent p.V144V 0.42 TCGA-DD-A1EE-01 3 111797619 111797619 C T TMPRSS7 Missense_Mutation p.A626V 0.06 deleterious(0) possibly_damaging(0.606) TCGA-DD-A1EE-01 3 120469757 120469757 G A GTF2E1 Missense_Mutation p.D120N 0.07 tolerated(0.11) benign(0.175) TCGA-DD-A1EE-01 3 122629075 122629075 G A SEMA5B Missense_Mutation p.T1178M 0.05 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-DD-A1EE-01 3 124165646 124165646 C G KALRN Missense_Mutation p.L1154V 0.10 deleterious(0.02) benign(0.101) TCGA-DD-A1EE-01 3 128516808 128516808 A G RAB7A Missense_Mutation p.N26D 0.03 deleterious(0.02) benign(0.129) TCGA-DD-A1EE-01 3 129275500 129275500 A G PLXND1 Missense_Mutation p.M1874T 0.10 deleterious(0) possibly_damaging(0.574) TCGA-DD-A1EE-01 3 129279234 129279234 C T PLXND1 Missense_Mutation p.R1691Q 0.09 deleterious(0.01) possibly_damaging(0.783) TCGA-DD-A1EE-01 3 130286897 130286897 A G COL6A6 Missense_Mutation p.K617R 0.07 tolerated(0.15) benign(0.01) TCGA-DD-A1EE-01 3 134348537 134348537 C A KY Missense_Mutation p.G88V 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.804) TCGA-DD-A1EE-01 3 1371531 1371531 G A CNTN6 Missense_Mutation p.D426N 0.06 tolerated(0.1) benign(0.011) TCGA-DD-A1EE-01 3 1371532 1371532 A T CNTN6 Missense_Mutation p.D426V 0.06 tolerated(0.08) possibly_damaging(0.632) TCGA-DD-A1EE-01 3 138219253 138219253 G A CEP70 Missense_Mutation p.L509F 0.07 deleterious(0) probably_damaging(0.971) TCGA-DD-A1EE-01 3 140281020 140281020 A T CLSTN2 Missense_Mutation p.L694F 0.10 deleterious(0) probably_damaging(0.997) TCGA-DD-A1EE-01 3 141678612 141678612 C A TFDP2 Nonsense_Mutation p.G319* 0.09 TCGA-DD-A1EE-01 3 141678613 141678613 C A TFDP2 Missense_Mutation p.M318I 0.08 deleterious(0.05) benign(0.297) TCGA-DD-A1EE-01 3 143704410 143704410 C T C3orf58 Missense_Mutation p.P228L 0.04 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 3 148559613 148559613 G A CPB1 Missense_Mutation p.G160S 0.09 tolerated(0.14) probably_damaging(1) TCGA-DD-A1EE-01 3 148923993 148923993 T C CP Missense_Mutation p.I390M 0.04 tolerated(0.24) benign(0.024) TCGA-DD-A1EE-01 3 151598552 151598552 G T SUCNR1 Missense_Mutation p.C74F 0.11 deleterious(0.04) probably_damaging(0.997) TCGA-DD-A1EE-01 3 155643090 155643090 A T GMPS Missense_Mutation p.M499L 0.11 tolerated(0.56) benign(0.001) TCGA-DD-A1EE-01 3 157820591 157820591 C T SHOX2 Missense_Mutation p.R168Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EE-01 3 164750329 164750329 G A SI Missense_Mutation p.T906I 0.07 tolerated(0.06) benign(0.009) TCGA-DD-A1EE-01 3 167250760 167250760 A C WDR49 Missense_Mutation p.Y302D 0.34 deleterious(0) probably_damaging(0.973) TCGA-DD-A1EE-01 3 167293931 167293931 T A WDR49 Missense_Mutation p.R87S 0.46 deleterious(0) possibly_damaging(0.828) TCGA-DD-A1EE-01 3 173322666 173322666 G T NLGN1 Missense_Mutation p.R93L 0.13 tolerated(1) benign(0.109) TCGA-DD-A1EE-01 3 173525610 173525610 C A NLGN1 Missense_Mutation p.L212I 0.08 tolerated(0.06) probably_damaging(0.977) TCGA-DD-A1EE-01 3 178916692 178916692 C A PIK3CA Missense_Mutation p.P27T 0.09 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 3 186504304 186504304 C T EIF4A2 Missense_Mutation p.S214F 0.07 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 3 192516472 192516472 G T MB21D2 Silent p.V393V 0.46 TCGA-DD-A1EE-01 3 195935366 195935366 C T ZDHHC19 Missense_Mutation p.M158I 0.12 deleterious(0.03) benign(0.14) TCGA-DD-A1EE-01 3 32915309 32915309 G A TRIM71 Splice_Site p.X285_splice 0.06 TCGA-DD-A1EE-01 3 33106973 33106973 C T GLB1 Silent p.G178G 0.12 TCGA-DD-A1EE-01 3 38135225 38135225 C T DLEC1 Missense_Mutation p.T629M 0.10 deleterious(0.04) benign(0.388) TCGA-DD-A1EE-01 3 39171742 39171742 G T TTC21A Nonsense_Mutation p.E745* 0.20 TCGA-DD-A1EE-01 3 41266110 41266110 A C CTNNB1 Missense_Mutation p.H36P 0.31 deleterious(0.04) benign(0.397) TCGA-DD-A1EE-01 3 41268766 41268766 A T CTNNB1 Missense_Mutation p.K335I 0.06 deleterious(0) probably_damaging(0.957) TCGA-DD-A1EE-01 3 41275047 41275047 C T CTNNB1 Missense_Mutation p.L405F 0.05 deleterious(0) probably_damaging(0.984) TCGA-DD-A1EE-01 3 44541229 44541229 C A ZNF852 Missense_Mutation p.S347I 0.62 deleterious(0.05) benign(0.251) TCGA-DD-A1EE-01 3 45153871 45153871 G C CDCP1 Missense_Mutation p.T120S 0.47 tolerated(0.79) benign(0.002) TCGA-DD-A1EE-01 3 46944951 46944951 C T PTH1R Silent p.N529N 0.37 TCGA-DD-A1EE-01 3 4732940 4732940 G A ITPR1 Missense_Mutation p.R1299Q 0.08 deleterious(0) probably_damaging(0.997) TCGA-DD-A1EE-01 3 49867199 49867199 C T TRAIP Missense_Mutation p.E363K 0.09 tolerated(0.75) benign(0.002) TCGA-DD-A1EE-01 3 50334446 50334446 C A NAT6 Missense_Mutation p.R172L 0.36 deleterious(0) probably_damaging(0.98) TCGA-DD-A1EE-01 3 52549455 52549455 G T STAB1 Missense_Mutation p.S1294I 0.15 deleterious(0.03) benign(0.288) TCGA-DD-A1EE-01 3 52588770 52588770 C A PBRM1 Missense_Mutation p.V1420L 0.05 tolerated(0.21) benign(0.009) TCGA-DD-A1EE-01 3 61975392 61975392 T C PTPRG Missense_Mutation p.V95A 0.14 deleterious(0.02) benign(0.357) TCGA-DD-A1EE-01 3 77614146 77614146 T C ROBO2 Missense_Mutation p.V591A 0.27 deleterious(0.01) possibly_damaging(0.765) TCGA-DD-A1EE-01 3 77629195 77629195 A C ROBO2 Missense_Mutation p.Q825P 0.19 tolerated(0.31) benign(0.418) TCGA-DD-A1EE-01 3 77651546 77651546 G A ROBO2 Missense_Mutation p.D1030N 0.04 deleterious(0) possibly_damaging(0.555) TCGA-DD-A1EE-01 3 85984981 85984981 G T CADM2 Missense_Mutation p.L248F 0.08 deleterious(0) probably_damaging(0.996) TCGA-DD-A1EE-01 3 86114753 86114753 A G CADM2 Splice_Site p.X357_splice 0.06 TCGA-DD-A1EE-01 3 97202883 97202883 T C EPHA6 Missense_Mutation p.I727T 0.06 deleterious(0) probably_damaging(0.998) TCGA-DD-A1EE-01 3 9776191 9776191 G A BRPF1 Missense_Mutation p.E123K 0.13 deleterious(0) benign(0.107) TCGA-DD-A1EE-01 4 100134799 100134799 C T ADH6 Missense_Mutation p.E76K 0.05 deleterious(0.02) probably_damaging(1) TCGA-DD-A1EE-01 4 107845310 107845310 C T DKK2 Missense_Mutation p.C194Y 0.08 deleterious(0) probably_damaging(0.986) TCGA-DD-A1EE-01 4 11400952 11400952 A T HS3ST1 Silent p.P226P 0.52 TCGA-DD-A1EE-01 4 114274329 114274329 G A ANK2 Missense_Mutation p.A1519T 0.07 probably_damaging(0.968) TCGA-DD-A1EE-01 4 122250816 122250816 C T QRFPR Missense_Mutation p.V317M 0.09 deleterious(0) possibly_damaging(0.903) TCGA-DD-A1EE-01 4 135121309 135121309 C A PABPC4L Missense_Mutation p.G347V 0.09 deleterious(0) benign(0.086) TCGA-DD-A1EE-01 4 135122360 135122360 C A PABPC4L 5'UTR 0.39 TCGA-DD-A1EE-01 4 144467138 144467138 A G SMARCA5 Missense_Mutation p.I820V 0.06 tolerated(0.1) benign(0.025) TCGA-DD-A1EE-01 4 145039884 145039884 T A GYPA Missense_Mutation p.H85L 0.07 deleterious(0.03) benign(0.013) TCGA-DD-A1EE-01 4 146824067 146824067 G T ZNF827 Missense_Mutation p.S115Y 0.06 tolerated(0.06) possibly_damaging(0.526) TCGA-DD-A1EE-01 4 146824068 146824068 A T ZNF827 Missense_Mutation p.S115T 0.06 tolerated(0.23) benign(0.073) TCGA-DD-A1EE-01 4 148886196 148886196 G A ARHGAP10 Missense_Mutation p.R491H 0.44 deleterious(0) probably_damaging(0.965) TCGA-DD-A1EE-01 4 156135578 156135578 C G NPY2R Missense_Mutation p.R163G 0.11 tolerated(0.35) benign(0.169) TCGA-DD-A1EE-01 4 158262498 158262498 G A GRIA2 Missense_Mutation p.A643T 0.09 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EE-01 4 158262499 158262499 C A GRIA2 Missense_Mutation p.A643D 0.09 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 4 15839760 15839760 T C CD38 Missense_Mutation p.S211P 0.10 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 4 159790073 159790073 A T FNIP2 Missense_Mutation p.Q762L 0.06 tolerated(0.07) benign(0.287) TCGA-DD-A1EE-01 4 164272591 164272591 T A NPY5R Missense_Mutation p.V389E 0.10 deleterious(0) probably_damaging(0.958) TCGA-DD-A1EE-01 4 1957858 1957858 G T WHSC1 Missense_Mutation p.G942W 0.07 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 4 2717767 2717767 A G FAM193A Missense_Mutation p.K1214E 0.39 deleterious(0) probably_damaging(0.979) TCGA-DD-A1EE-01 4 30724910 30724910 C A PCDH7 Missense_Mutation p.S622R 0.17 deleterious(0.01) benign(0.373) TCGA-DD-A1EE-01 4 37447730 37447730 A G KIAA1239 Missense_Mutation p.T1374A 0.09 tolerated(0.15) benign(0.14) TCGA-DD-A1EE-01 4 37447823 37447823 A C KIAA1239 Missense_Mutation p.I1405L 0.15 deleterious(0.05) benign(0.079) TCGA-DD-A1EE-01 4 39310299 39310299 C A RFC1 Missense_Mutation p.W614C 0.09 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 4 44177219 44177219 T C KCTD8 Missense_Mutation p.K337R 0.07 tolerated(0.18) benign(0.143) TCGA-DD-A1EE-01 4 4419238 4419238 A T NSG1 3'UTR 0.12 TCGA-DD-A1EE-01 4 46053503 46053503 A T GABRG1 Missense_Mutation p.F357I 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-DD-A1EE-01 4 46390683 46390684 AG T GABRA2 Frame_Shift_Del p.L14Ifs*61 0.09 TCGA-DD-A1EE-01 4 46930408 46930408 G T GABRA4 Nonsense_Mutation p.S500* 0.08 TCGA-DD-A1EE-01 4 56750089 56750089 A C EXOC1 Missense_Mutation p.K442T 0.10 tolerated(0.45) benign(0.01) TCGA-DD-A1EE-01 4 56846403 56846403 A T CEP135 Missense_Mutation p.Q523L 0.06 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EE-01 4 57860856 57860856 A G POLR2B Missense_Mutation p.K134E 0.09 tolerated(0.52) benign(0.014) TCGA-DD-A1EE-01 4 62849309 62849309 G T LPHN3 Missense_Mutation p.G1007V 0.09 deleterious(0) probably_damaging(0.98) TCGA-DD-A1EE-01 4 65240898 65240898 T C TECRL Missense_Mutation p.H93R 0.32 deleterious(0.04) benign(0.295) TCGA-DD-A1EE-01 4 66218783 66218783 C T EPHA5 Missense_Mutation p.G759S 0.46 deleterious(0) probably_damaging(0.998) TCGA-DD-A1EE-01 4 69682095 69682095 G C UGT2B10 Missense_Mutation p.D120H 0.06 deleterious(0.02) benign(0.349) TCGA-DD-A1EE-01 4 70455333 70455333 G T UGT2A1 Missense_Mutation p.H613Q 0.10 tolerated(0.16) benign(0.072) TCGA-DD-A1EE-01 4 71024516 71024516 C A C4orf40 Missense_Mutation p.P183T 0.07 deleterious(0) unknown(0) TCGA-DD-A1EE-01 4 71346814 71346814 C T MUC7 Missense_Mutation p.S118L 0.05 deleterious(0.01) possibly_damaging(0.895) TCGA-DD-A1EE-01 4 74274521 74274524 AAGT - ALB Splice_Site p.X161_splice 0.36 TCGA-DD-A1EE-01 4 74283297 74283298 - T ALB Frame_Shift_Ins p.V448Cfs*16 0.13 TCGA-DD-A1EE-01 4 76912095 76912095 G T SDAD1 5'UTR 0.49 TCGA-DD-A1EE-01 4 77230589 77230589 G T FAM47E-STBD1 Missense_Mutation p.E171D 0.10 tolerated(0.13) benign(0.055) TCGA-DD-A1EE-01 4 79503384 79503384 G A ANXA3 Missense_Mutation p.M84I 0.07 tolerated(1) benign(0.009) TCGA-DD-A1EE-01 4 81207740 81207740 A C FGF5 Missense_Mutation p.S241R 0.08 tolerated_low_confidence(0.52) benign(0.001) TCGA-DD-A1EE-01 4 90170546 90170546 G A GPRIN3 Missense_Mutation p.T239I 0.10 tolerated(0.06) benign(0.044) TCGA-DD-A1EE-01 5 11082847 11082847 G A CTNND2 Missense_Mutation p.R917W 0.08 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 5 112238112 112238112 A G REEP5 Missense_Mutation p.F106L 0.08 tolerated(0.68) possibly_damaging(0.524) TCGA-DD-A1EE-01 5 114861063 114861063 A C FEM1C Missense_Mutation p.L266V 0.04 deleterious(0.04) benign(0.08) TCGA-DD-A1EE-01 5 118485268 118485268 C T DMXL1 Missense_Mutation p.P1249L 0.08 tolerated(0.4) benign(0.002) TCGA-DD-A1EE-01 5 120021691 120021691 G C PRR16 Missense_Mutation p.E45Q 0.46 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DD-A1EE-01 5 132534838 132534838 C G FSTL4 Missense_Mutation p.E826D 0.07 deleterious(0) possibly_damaging(0.786) TCGA-DD-A1EE-01 5 137681062 137681062 C T FAM53C Missense_Mutation p.R229C 0.06 deleterious(0) probably_damaging(0.942) TCGA-DD-A1EE-01 5 13770967 13770967 T C DNAH5 Missense_Mutation p.R3166G 0.08 benign(0.415) TCGA-DD-A1EE-01 5 140347607 140347607 A G PCDHAC2 Missense_Mutation p.Y419C 0.13 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 5 140871119 140871119 G A PCDHGC5 Missense_Mutation p.S771N 0.29 deleterious(0.03) benign(0.136) TCGA-DD-A1EE-01 5 147819259 147819259 A G FBXO38 Missense_Mutation p.Y950C 0.30 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EE-01 5 148411195 148411195 C A SH3TC2 Nonsense_Mutation p.G353* 0.11 TCGA-DD-A1EE-01 5 149497264 149497264 G T PDGFRB Missense_Mutation p.D1018E 0.39 tolerated(0.23) benign(0.188) TCGA-DD-A1EE-01 5 149997910 149997910 C T SYNPO 5'UTR 0.40 TCGA-DD-A1EE-01 5 154305610 154305610 A C GEMIN5 Missense_Mutation p.L369V 0.06 deleterious(0.02) benign(0.025) TCGA-DD-A1EE-01 5 161318012 161318012 C T GABRA1 Missense_Mutation p.S271F 0.05 deleterious(0) possibly_damaging(0.761) TCGA-DD-A1EE-01 5 169685155 169685155 A G LCP2 Missense_Mutation p.L329S 0.07 deleterious(0) possibly_damaging(0.735) TCGA-DD-A1EE-01 5 176895871 176895871 T A DBN1 Missense_Mutation p.D41V 0.07 deleterious(0) probably_damaging(0.996) TCGA-DD-A1EE-01 5 176916422 176916422 C T PDLIM7 Missense_Mutation p.V281M 0.38 tolerated(0.89) possibly_damaging(0.596) TCGA-DD-A1EE-01 5 180432823 180432823 A C BTNL3 Missense_Mutation p.D451A 0.06 deleterious(0.03) benign(0.122) TCGA-DD-A1EE-01 5 35089695 35089695 C T PRLR Missense_Mutation p.V10I 0.15 tolerated(0.37) benign(0.008) TCGA-DD-A1EE-01 5 3599577 3599577 C A IRX1 Missense_Mutation p.T172K 0.16 deleterious(0) probably_damaging(0.993) TCGA-DD-A1EE-01 5 38370498 38370498 G T EGFLAM Missense_Mutation p.V216L 0.14 tolerated_low_confidence(0.09) benign(0.291) TCGA-DD-A1EE-01 5 42804757 42804757 C A SEPP1 Splice_Site p.X178_splice 0.06 TCGA-DD-A1EE-01 5 58882174 58882174 T C PDE4D Intron 0.06 TCGA-DD-A1EE-01 5 64976616 64976616 G A SGTB Missense_Mutation p.A162V 0.50 deleterious(0) probably_damaging(0.991) TCGA-DD-A1EE-01 5 72348291 72348292 - A FCHO2 Frame_Shift_Ins p.V379Sfs*14 0.23 TCGA-DD-A1EE-01 5 76342270 76342270 C T AGGF1 Silent p.G323G 0.08 TCGA-DD-A1EE-01 5 95091309 95091309 A G RHOBTB3 Missense_Mutation p.I298V 0.05 tolerated(0.57) benign(0.003) TCGA-DD-A1EE-01 5 95226823 95226823 C A ELL2 Missense_Mutation p.G582V 0.08 deleterious(0) probably_damaging(0.991) TCGA-DD-A1EE-01 6 111678241 111678241 T A REV3L Missense_Mutation p.H2387L 0.16 deleterious(0.03) benign(0) TCGA-DD-A1EE-01 6 114264582 114264582 A T HDAC2 Missense_Mutation p.D437E 0.15 tolerated(0.23) benign(0.002) TCGA-DD-A1EE-01 6 125584076 125584076 C T TPD52L1 Missense_Mutation p.R195W 0.30 deleterious_low_confidence(0.02) benign(0.002) TCGA-DD-A1EE-01 6 129691127 129691127 C T LAMA2 Silent p.L1651L 0.16 TCGA-DD-A1EE-01 6 142409410 142409410 A C NMBR Missense_Mutation p.V129G 0.13 deleterious(0.02) probably_damaging(0.995) TCGA-DD-A1EE-01 6 151161944 151161944 T G PLEKHG1 Missense_Mutation p.L1357R 0.12 deleterious(0) probably_damaging(0.969) TCGA-DD-A1EE-01 6 15507624 15507624 T A JARID2 Missense_Mutation p.L903Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EE-01 6 160454027 160454027 G T IGF2R Nonsense_Mutation p.G367* 0.06 TCGA-DD-A1EE-01 6 165846593 165846593 C G PDE10A Missense_Mutation p.G188R 0.06 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EE-01 6 170105298 170105298 T C PHF10 Missense_Mutation p.M448V 0.16 deleterious(0) probably_damaging(0.974) TCGA-DD-A1EE-01 6 22294684 22294684 A T PRL Missense_Mutation p.L53Q 0.05 tolerated(0.07) probably_damaging(0.997) TCGA-DD-A1EE-01 6 26156943 26156943 A T HIST1H1E Nonsense_Mutation p.K109* 0.08 TCGA-DD-A1EE-01 6 26156946 26156946 A T HIST1H1E Nonsense_Mutation p.K110* 0.08 TCGA-DD-A1EE-01 6 27834715 27834715 G T HIST1H1B Missense_Mutation p.P198Q 0.52 deleterious(0) unknown(0) TCGA-DD-A1EE-01 6 28134514 28134514 G T ZNF192P1 RNA 0.08 TCGA-DD-A1EE-01 6 28268801 28268801 G C PGBD1 Missense_Mutation p.W390C 0.07 deleterious(0) probably_damaging(0.987) TCGA-DD-A1EE-01 6 28269056 28269056 G T PGBD1 Missense_Mutation p.R475S 0.05 deleterious(0.03) possibly_damaging(0.864) TCGA-DD-A1EE-01 6 29395051 29395051 C T OR11A1 Missense_Mutation p.R123H 0.05 deleterious(0.01) probably_damaging(0.909) TCGA-DD-A1EE-01 6 31083770 31083770 C A CDSN 3'UTR 0.23 TCGA-DD-A1EE-01 6 32123651 32123651 C T PPT2 Missense_Mutation p.T152M 0.04 deleterious(0) probably_damaging(0.985) TCGA-DD-A1EE-01 6 33166198 33166198 G - RXRB Frame_Shift_Del p.P176Lfs*4 0.09 TCGA-DD-A1EE-01 6 33423961 33423961 G A ZBTB9 Missense_Mutation p.G362R 0.29 tolerated(0.12) probably_damaging(0.981) TCGA-DD-A1EE-01 6 33657110 33657110 C A ITPR3 Missense_Mutation p.L2264I 0.08 tolerated(0.09) benign(0.017) TCGA-DD-A1EE-01 6 34574641 34574641 A C C6orf106 Silent p.L184L 0.31 TCGA-DD-A1EE-01 6 34802105 34802105 C A UHRF1BP1 Silent p.L150L 0.59 TCGA-DD-A1EE-01 6 35436589 35436589 C G RPL10A Missense_Mutation p.R7G 0.36 tolerated(0.4) benign(0.025) TCGA-DD-A1EE-01 6 36447368 36447368 G T KCTD20 Missense_Mutation p.D180Y 0.06 deleterious(0) probably_damaging(0.998) TCGA-DD-A1EE-01 6 36651880 36651880 T G CDKN1A Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-DD-A1EE-01 6 36651881 36651881 G T CDKN1A Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-DD-A1EE-01 6 38747836 38747836 A T DNAH8 Nonsense_Mutation p.K495* 0.08 TCGA-DD-A1EE-01 6 41773689 41773689 T G USP49 Missense_Mutation p.I345L 0.13 deleterious(0.02) benign(0.028) TCGA-DD-A1EE-01 6 42978962 42978962 A C PPP2R5D Missense_Mutation p.K583Q 0.11 tolerated_low_confidence(0.09) benign(0.058) TCGA-DD-A1EE-01 6 43274043 43274043 C T CRIP3 Missense_Mutation p.V137M 0.13 deleterious(0.01) possibly_damaging(0.548) TCGA-DD-A1EE-01 6 43274045 43274045 T A CRIP3 Missense_Mutation p.K136M 0.13 deleterious(0) possibly_damaging(0.785) TCGA-DD-A1EE-01 6 43274046 43274046 T C CRIP3 Missense_Mutation p.K136E 0.12 deleterious(0.03) benign(0.226) TCGA-DD-A1EE-01 6 45922898 45922898 G A CLIC5 Silent p.F208F 0.11 TCGA-DD-A1EE-01 6 46672428 46672428 G C PLA2G7 Missense_Mutation p.H399D 0.09 tolerated(0.38) benign(0.001) TCGA-DD-A1EE-01 6 46976681 46976681 C G GPR110 Missense_Mutation p.Q830H 0.08 deleterious(0) probably_damaging(0.962) TCGA-DD-A1EE-01 6 49753721 49753721 T A PGK2 Missense_Mutation p.T394S 0.04 deleterious(0.01) possibly_damaging(0.815) TCGA-DD-A1EE-01 6 52101936 52101936 C T IL17F Silent p.S95S 0.08 TCGA-DD-A1EE-01 6 56515930 56515930 C T DST Missense_Mutation p.D232N 0.03 probably_damaging(0.996) TCGA-DD-A1EE-01 6 56535577 56535577 G A DST Missense_Mutation p.S148L 0.25 possibly_damaging(0.89) TCGA-DD-A1EE-01 6 70993489 70993489 G T COL9A1 Missense_Mutation p.P244H 0.14 unknown(0) TCGA-DD-A1EE-01 6 76024218 76024218 T A FILIP1 Nonsense_Mutation p.K444* 0.15 TCGA-DD-A1EE-01 6 84117526 84117526 A T ME1 Missense_Mutation p.V58E 0.14 deleterious(0) possibly_damaging(0.57) TCGA-DD-A1EE-01 6 96656107 96656107 T A FUT9 3'UTR 0.72 TCGA-DD-A1EE-01 6 97246970 97246970 A G GPR63 Missense_Mutation p.L213S 0.28 tolerated(0.55) benign(0.124) TCGA-DD-A1EE-01 6 99322272 99322272 G T FBXL4 Missense_Mutation p.S583Y 0.07 deleterious(0.01) benign(0.309) TCGA-DD-A1EE-01 7 100274386 100274386 C A GNB2 Missense_Mutation p.A56E 0.28 deleterious(0.01) possibly_damaging(0.556) TCGA-DD-A1EE-01 7 100452001 100452001 G T SLC12A9 Splice_Site p.X61_splice 0.05 TCGA-DD-A1EE-01 7 102738867 102738867 A G ARMC10 Missense_Mutation p.Q300R 0.05 tolerated(0.21) benign(0.029) TCGA-DD-A1EE-01 7 103276844 103276844 C T RELN Missense_Mutation p.S714N 0.04 tolerated(0.44) possibly_damaging(0.696) TCGA-DD-A1EE-01 7 107115448 107115448 T C GPR22 Missense_Mutation p.S315P 0.04 deleterious(0.01) probably_damaging(0.913) TCGA-DD-A1EE-01 7 108155899 108155899 G A PNPLA8 Missense_Mutation p.L13F 0.07 tolerated_low_confidence(0.53) benign(0.005) TCGA-DD-A1EE-01 7 119914945 119914945 C A KCND2 Missense_Mutation p.R87S 0.08 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 7 121684477 121684477 A G PTPRZ1 Missense_Mutation p.E1980G 0.50 deleterious(0) probably_damaging(0.979) TCGA-DD-A1EE-01 7 128449544 128449544 A T CCDC136 Missense_Mutation p.K549M 0.05 tolerated(0.12) probably_damaging(0.919) TCGA-DD-A1EE-01 7 134717658 134717659 - T AGBL3 Frame_Shift_Ins p.V162Cfs*5 0.08 TCGA-DD-A1EE-01 7 135047915 135047915 T C CNOT4 Missense_Mutation p.S622G 0.65 tolerated_low_confidence(0.15) benign(0) TCGA-DD-A1EE-01 7 143039472 143039472 A G CLCN1 Missense_Mutation p.T602A 0.05 deleterious(0.02) possibly_damaging(0.469) TCGA-DD-A1EE-01 7 150934562 150934562 G A CHPF2 Missense_Mutation p.V372M 0.05 deleterious(0.02) probably_damaging(0.934) TCGA-DD-A1EE-01 7 155094019 155094019 G A INSIG1 Missense_Mutation p.G199D 0.04 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 7 24705683 24705683 G C MPP6 Missense_Mutation p.M309I 0.04 tolerated(0.28) benign(0.009) TCGA-DD-A1EE-01 7 43484350 43484350 T A HECW1 Missense_Mutation p.S527T 0.16 tolerated_low_confidence(0.42) benign(0.001) TCGA-DD-A1EE-01 7 47876625 47876625 G A PKD1L1 Missense_Mutation p.P1946L 0.48 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 7 48443391 48443391 G T ABCA13 Missense_Mutation p.R3995S 0.08 benign(0.038) TCGA-DD-A1EE-01 7 48559659 48559659 T C ABCA13 Missense_Mutation p.V4607A 0.55 possibly_damaging(0.684) TCGA-DD-A1EE-01 7 5643546 5643546 C T FSCN1 Silent p.F388F 0.66 TCGA-DD-A1EE-01 7 6063476 6063476 T C EIF2AK1 3'UTR 0.09 TCGA-DD-A1EE-01 7 65440043 65440043 G A GUSB Nonsense_Mutation p.Q310* 0.58 TCGA-DD-A1EE-01 7 65751568 65751568 A G TPST1 Missense_Mutation p.I306V 0.08 tolerated(0.09) benign(0.071) TCGA-DD-A1EE-01 7 6590947 6590947 C G GRID2IP Missense_Mutation p.G41R 0.42 deleterious(0) possibly_damaging(0.866) TCGA-DD-A1EE-01 7 76142448 76142448 C A UPK3B Intron 0.21 TCGA-DD-A1EE-01 7 76909777 76909777 A G CCDC146 Missense_Mutation p.N576D 0.04 deleterious(0.01) benign(0.439) TCGA-DD-A1EE-01 7 77569480 77569480 C A PHTF2 Nonsense_Mutation p.S500* 0.10 TCGA-DD-A1EE-01 7 81339556 81339556 G T HGF Missense_Mutation p.P483H 0.03 deleterious(0.03) possibly_damaging(0.827) TCGA-DD-A1EE-01 7 82585390 82585390 G A PCLO Missense_Mutation p.H1627Y 0.27 unknown(0) TCGA-DD-A1EE-01 7 83590805 83590805 C A SEMA3A Missense_Mutation p.R733L 0.05 tolerated(0.07) possibly_damaging(0.604) TCGA-DD-A1EE-01 7 94293700 94293700 C T PEG10 Missense_Mutation p.R278C 0.06 deleterious(0) possibly_damaging(0.724) TCGA-DD-A1EE-01 7 99693701 99693701 C A MCM7 Missense_Mutation p.G431C 0.07 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 7 99697309 99697309 G C MCM7 Missense_Mutation p.P60R 0.14 tolerated(0.37) benign(0.211) TCGA-DD-A1EE-01 7 99818613 99818613 C A PVRIG Nonsense_Mutation p.C240* 0.08 TCGA-DD-A1EE-01 8 103293516 103293516 C T UBR5 Splice_Site p.X1976_splice 0.06 TCGA-DD-A1EE-01 8 10467732 10467732 T A RP1L1 Missense_Mutation p.L1292F 0.11 benign(0.061) TCGA-DD-A1EE-01 8 10470139 10470139 C A RP1L1 Missense_Mutation p.G490V 0.15 possibly_damaging(0.791) TCGA-DD-A1EE-01 8 105360964 105360964 G A DCSTAMP Missense_Mutation p.A62T 0.29 tolerated(0.57) benign(0.001) TCGA-DD-A1EE-01 8 105361088 105361088 C A DCSTAMP Missense_Mutation p.T103K 0.06 deleterious(0) possibly_damaging(0.852) TCGA-DD-A1EE-01 8 130777987 130777987 C G GSDMC Missense_Mutation p.D153H 0.04 tolerated(0.15) benign(0.305) TCGA-DD-A1EE-01 8 131164981 131164981 C T ASAP1 Splice_Site p.X360_splice 0.04 TCGA-DD-A1EE-01 8 133053841 133053841 C A OC90 Missense_Mutation p.R92L 0.04 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 8 133153576 133153576 T A KCNQ3 Missense_Mutation p.Q422L 0.15 tolerated(0.05) benign(0.009) TCGA-DD-A1EE-01 8 144698895 144698895 T C TSTA3 Splice_Site 0.11 TCGA-DD-A1EE-01 8 145584640 145584640 A - SLC52A2 Frame_Shift_Del p.S435Afs*54 0.18 TCGA-DD-A1EE-01 8 16853235 16853235 G T FGF20 Missense_Mutation p.L107M 0.23 deleterious(0.02) possibly_damaging(0.551) TCGA-DD-A1EE-01 8 17198903 17198903 T C MTMR7 Missense_Mutation p.D234G 0.11 tolerated(0.19) benign(0.007) TCGA-DD-A1EE-01 8 24349491 24349491 C T ADAM7 Missense_Mutation p.P478S 0.14 tolerated(1) benign(0.057) TCGA-DD-A1EE-01 8 25360887 25360887 A T CDCA2 Splice_Site p.X558_splice 0.64 TCGA-DD-A1EE-01 8 30643819 30643819 G A PPP2CB Nonsense_Mutation p.Q288* 0.10 TCGA-DD-A1EE-01 8 40683185 40683185 G A ZMAT4 Missense_Mutation p.S4F 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.459) TCGA-DD-A1EE-01 8 43033222 43033222 T A HGSNAT Missense_Mutation p.V286E 0.07 deleterious(0) probably_damaging(0.953) TCGA-DD-A1EE-01 8 54147486 54147486 G C OPRK1 Missense_Mutation p.T148S 0.06 tolerated(0.07) probably_damaging(0.999) TCGA-DD-A1EE-01 8 64098980 64098980 G A YTHDF3 Silent p.G136G 0.07 TCGA-DD-A1EE-01 8 67067941 67067941 A C TRIM55 Intron 0.08 TCGA-DD-A1EE-01 8 73848335 73848335 C G KCNB2 Missense_Mutation p.L249V 0.09 tolerated(0.16) possibly_damaging(0.759) TCGA-DD-A1EE-01 8 82370841 82370841 A G FABP9 Missense_Mutation p.V115A 0.24 deleterious(0) benign(0.315) TCGA-DD-A1EE-01 8 86057621 86057621 T A LRRCC1 Intron 0.47 TCGA-DD-A1EE-01 8 86057622 86057622 A T LRRCC1 Splice_Site p.X993_splice 0.47 TCGA-DD-A1EE-01 8 99560362 99560362 T A STK3 Missense_Mutation p.M354L 0.04 tolerated(0.25) benign(0.005) TCGA-DD-A1EE-01 9 101749575 101749575 G A COL15A1 Splice_Site p.X217_splice 0.17 TCGA-DD-A1EE-01 9 104449365 104449365 C A GRIN3A Missense_Mutation p.D273Y 0.06 tolerated(1) possibly_damaging(0.629) TCGA-DD-A1EE-01 9 106894408 106894408 T G SMC2 Splice_Site p.X1036_splice 0.11 TCGA-DD-A1EE-01 9 114202776 114202776 G T KIAA0368 Missense_Mutation p.L317I 0.35 tolerated(0.07) probably_damaging(0.95) TCGA-DD-A1EE-01 9 116151330 116151330 C G ALAD Missense_Mutation p.W286C 0.09 tolerated(0.18) benign(0.018) TCGA-DD-A1EE-01 9 117086341 117086341 C T ORM1 Missense_Mutation p.R101W 0.11 deleterious(0.04) possibly_damaging(0.843) TCGA-DD-A1EE-01 9 125674263 125674263 T C ZBTB6 Missense_Mutation p.N30S 0.13 tolerated(0.21) probably_damaging(0.996) TCGA-DD-A1EE-01 9 127561615 127561615 C A OLFML2A Missense_Mutation p.R172S 0.43 tolerated(0.53) benign(0.15) TCGA-DD-A1EE-01 9 129453272 129453272 C A LMX1B Missense_Mutation p.Q162K 0.53 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EE-01 9 130550943 130550943 G T CDK9 Missense_Mutation p.S242I 0.24 tolerated(0.46) probably_damaging(0.934) TCGA-DD-A1EE-01 9 131256871 131256871 A C ODF2 Missense_Mutation p.E612A 0.17 deleterious(0.04) benign(0.331) TCGA-DD-A1EE-01 9 131909700 131909700 A G PPP2R4 Missense_Mutation p.K310R 0.31 tolerated(0.34) benign(0.001) TCGA-DD-A1EE-01 9 131909703 131909703 T C PPP2R4 Missense_Mutation p.F311S 0.31 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EE-01 9 132934955 132934955 A G NCS1 Missense_Mutation p.N5D 0.20 tolerated(0.2) benign(0.009) TCGA-DD-A1EE-01 9 133948175 133948175 T A LAMC3 Missense_Mutation p.S1124T 0.09 tolerated(0.11) benign(0.02) TCGA-DD-A1EE-01 9 136269044 136269044 G T C9orf96 Missense_Mutation p.G535V 0.12 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EE-01 9 136582451 136582451 G T SARDH Missense_Mutation p.P383T 0.11 deleterious(0) probably_damaging(0.956) TCGA-DD-A1EE-01 9 140880982 140880982 G T CACNA1B Missense_Mutation p.Q629H 0.10 deleterious(0) benign(0.385) TCGA-DD-A1EE-01 9 19121143 19121143 G A PLIN2 Silent p.G110G 0.20 TCGA-DD-A1EE-01 9 2718262 2718262 G A KCNV2 Missense_Mutation p.G175R 0.37 deleterious(0) benign(0.067) TCGA-DD-A1EE-01 9 70177646 70177646 T C FOXD4L5 Missense_Mutation p.Y113C 0.15 deleterious(0) probably_damaging(0.996) TCGA-DD-A1EE-01 9 738429 738429 G A KANK1 Missense_Mutation p.G1160S 0.09 deleterious(0.02) probably_damaging(0.962) TCGA-DD-A1EE-01 9 79322715 79322715 C A PRUNE2 Missense_Mutation p.G1492V 0.44 tolerated(0.32) benign(0.115) TCGA-DD-A1EE-01 9 79824389 79824389 C T VPS13A Nonsense_Mutation p.Q146* 0.08 TCGA-DD-A1EE-01 X 10085259 10085259 G A WWC3 Missense_Mutation p.S387N 0.92 tolerated(0.34) probably_damaging(0.944) TCGA-DD-A1EE-01 X 102931737 102931737 C A MORF4L2 Missense_Mutation p.R73S 0.23 tolerated(0.69) benign(0.005) TCGA-DD-A1EE-01 X 103041518 103041518 A G PLP1 Missense_Mutation p.T106A 0.23 tolerated(0.23) benign(0.017) TCGA-DD-A1EE-01 X 103041636 103041636 G A PLP1 Nonsense_Mutation p.W145* 0.11 TCGA-DD-A1EE-01 X 107976586 107976586 G A IRS4 Missense_Mutation p.L997F 0.17 tolerated(0.26) unknown(0) TCGA-DD-A1EE-01 X 114424168 114424168 C A RBMXL3 Missense_Mutation p.T55N 0.27 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DD-A1EE-01 X 119669737 119669737 A C CUL4B Missense_Mutation p.L721R 0.08 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EE-01 X 128722192 128722192 C T OCRL Missense_Mutation p.L765F 0.19 tolerated(0.97) probably_damaging(0.987) TCGA-DD-A1EE-01 X 131212315 131212315 G A FRMD7 Missense_Mutation p.A577V 0.11 tolerated(0.24) benign(0.004) TCGA-DD-A1EE-01 X 135453612 135453612 A G GPR112 Missense_Mutation p.M2508V 0.08 tolerated(0.23) benign(0.017) TCGA-DD-A1EE-01 X 140985121 140985121 A G MAGEC3 Missense_Mutation p.E526G 0.07 tolerated(0.06) possibly_damaging(0.707) TCGA-DD-A1EE-01 X 150155724 150155724 A T HMGB3 Missense_Mutation p.E138D 0.92 tolerated(1) benign(0.248) TCGA-DD-A1EE-01 X 151821044 151821044 C A GABRQ Missense_Mutation p.P400H 0.06 tolerated(0.1) benign(0.126) TCGA-DD-A1EE-01 X 153035604 153035604 G A PLXNB3 Missense_Mutation p.A586T 0.95 tolerated(0.39) benign(0.099) TCGA-DD-A1EE-01 X 153055245 153055245 G A IDH3G Missense_Mutation p.H90Y 0.22 tolerated(0.74) benign(0.063) TCGA-DD-A1EE-01 X 19379516 19379516 A G MAP3K15 Silent p.Y1266Y 0.11 TCGA-DD-A1EE-01 X 20252926 20252926 G A RPS6KA3 Nonsense_Mutation p.Q26* 0.10 TCGA-DD-A1EE-01 X 21545015 21545015 G A CNKSR2 Missense_Mutation p.V330I 0.19 tolerated(0.28) benign(0.002) TCGA-DD-A1EE-01 X 47428285 47428285 G T ARAF Missense_Mutation p.Q415H 0.13 deleterious(0) probably_damaging(0.998) TCGA-DD-A1EE-01 X 63410708 63410708 C A AMER1 Missense_Mutation p.G820V 0.27 deleterious(0) probably_damaging(1) TCGA-DD-A1EE-01 X 63445128 63445128 T C ASB12 Missense_Mutation p.S135G 0.07 deleterious(0) probably_damaging(0.987) TCGA-DD-A1EE-01 X 70680629 70680629 A G TAF1 Missense_Mutation p.H1812R 0.19 tolerated_low_confidence(0.21) benign(0.003) TCGA-DD-A1EE-01 X 75397801 75397801 G T PBDC1 3'UTR 0.92 TCGA-DD-A1EE-01 X 83128877 83128877 G T CYLC1 Missense_Mutation p.L387F 0.06 deleterious(0.05) unknown(0) TCGA-DD-A1EE-01 X 85218969 85218969 C G CHM Missense_Mutation p.D135H 0.05 tolerated(0.08) benign(0.002) TCGA-DD-A1EE-01 X 89177754 89177754 G A TGIF2LX Missense_Mutation p.A224T 0.14 deleterious(0) probably_damaging(0.977) TCGA-DD-A1EF-01 10 127569442 127569442 T A DHX32 5'UTR 0.20 TCGA-DD-A1EF-01 10 17130262 17130262 A G CUBN Silent p.C616C 0.20 TCGA-DD-A1EF-01 10 30900867 30900867 C G LYZL2 3'UTR 0.35 TCGA-DD-A1EF-01 10 436697 436697 T A DIP2C Missense_Mutation p.E456V 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-DD-A1EF-01 10 48388579 48388579 G A RBP3 Silent p.L767L 0.38 TCGA-DD-A1EF-01 10 58118598 58118598 C T ZWINT Silent p.Q197Q 0.18 TCGA-DD-A1EF-01 10 6258734 6258734 T C PFKFB3 Silent p.N144N 0.37 TCGA-DD-A1EF-01 10 64966479 64966479 G C JMJD1C Nonsense_Mutation p.Y1650* 0.30 TCGA-DD-A1EF-01 10 91474892 91474892 A G KIF20B Missense_Mutation p.K298R 0.35 tolerated(0.11) probably_damaging(0.991) TCGA-DD-A1EF-01 10 94223595 94223595 T A IDE Missense_Mutation p.H885L 0.15 deleterious(0.01) probably_damaging(0.987) TCGA-DD-A1EF-01 10 95123767 95123767 C T MYOF Missense_Mutation p.R940H 0.40 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EF-01 11 100792230 100792230 T C ARHGAP42 Silent p.D164D 0.31 TCGA-DD-A1EF-01 11 111746109 111746109 A G FDXACB1 Missense_Mutation p.I471T 0.55 tolerated(0.99) benign(0) TCGA-DD-A1EF-01 11 119290042 119290042 G A THY1 3'UTR 0.09 TCGA-DD-A1EF-01 11 124767725 124767725 A G ROBO4 5'UTR 0.16 TCGA-DD-A1EF-01 11 125237764 125237764 C T PKNOX2 Missense_Mutation p.P37L 0.27 tolerated_low_confidence(0.07) benign(0.066) TCGA-DD-A1EF-01 11 46804849 46804849 C T CKAP5 Missense_Mutation p.A742T 0.08 deleterious(0) possibly_damaging(0.529) TCGA-DD-A1EF-01 11 68530229 68530229 C A CPT1A Missense_Mutation p.D581Y 0.61 deleterious(0) probably_damaging(0.985) TCGA-DD-A1EF-01 11 9202573 9202573 G T DENND5A Missense_Mutation p.P399Q 0.21 deleterious(0) probably_damaging(1) TCGA-DD-A1EF-01 12 101365128 101365128 C T ANO4 Silent p.A132A 0.19 TCGA-DD-A1EF-01 12 103696092 103696092 G A C12orf42 Missense_Mutation p.R293W 0.11 deleterious(0.02) possibly_damaging(0.898) TCGA-DD-A1EF-01 12 109885134 109885134 C T MYO1H 3'UTR 0.26 TCGA-DD-A1EF-01 12 117710212 117710212 T C NOS1 Missense_Mutation p.N606S 0.11 tolerated(0.8) benign(0) TCGA-DD-A1EF-01 12 55641327 55641327 G A OR6C74 Missense_Mutation p.G86S 0.26 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-DD-A1EF-01 12 58131419 58131419 T C AGAP2 Missense_Mutation p.K204R 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-DD-A1EF-01 12 5936960 5936960 G A ANO2 Silent p.A285A 0.40 TCGA-DD-A1EF-01 13 25823570 25823570 A C MTMR6 Missense_Mutation p.S556A 0.24 tolerated(0.47) benign(0.006) TCGA-DD-A1EF-01 13 46135603 46135603 A G FAM194B Silent p.P436P 0.09 TCGA-DD-A1EF-01 13 99371494 99371494 G A SLC15A1 Silent p.L213L 0.35 TCGA-DD-A1EF-01 14 100172868 100172868 G T CYP46A1 Intron 0.40 TCGA-DD-A1EF-01 14 55857663 55857663 T C ATG14 Silent p.Q125Q 0.13 TCGA-DD-A1EF-01 14 72054832 72054832 A T SIPA1L1 Silent p.A81A 0.47 TCGA-DD-A1EF-01 14 96809512 96809512 A T ATG2B Missense_Mutation p.W230R 0.07 deleterious(0.04) probably_damaging(0.986) TCGA-DD-A1EF-01 15 100332658 100332658 C T AC090825.1 3'Flank 0.24 TCGA-DD-A1EF-01 15 45403646 45403646 G A DUOX2 Silent p.N217N 0.33 TCGA-DD-A1EF-01 15 45884374 45884374 T A BLOC1S6 Missense_Mutation p.L42M 0.35 tolerated(0.16) possibly_damaging(0.632) TCGA-DD-A1EF-01 15 56387953 56387953 T C RFX7 Missense_Mutation p.K658R 0.34 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DD-A1EF-01 15 69076893 69076893 G A ANP32A Silent p.C123C 0.23 TCGA-DD-A1EF-01 15 75762179 75762180 AG - PTPN9 Frame_Shift_Del p.P507Rfs*35 0.24 TCGA-DD-A1EF-01 15 77227917 77227917 G A RCN2 Missense_Mutation p.E101K 0.29 deleterious(0.03) possibly_damaging(0.887) TCGA-DD-A1EF-01 15 99023985 99023985 C G FAM169B Missense_Mutation p.V10L 0.26 deleterious(0.01) benign(0.002) TCGA-DD-A1EF-01 16 27761333 27761333 A G KIAA0556 Missense_Mutation p.I1018V 0.18 deleterious(0.03) probably_damaging(0.946) TCGA-DD-A1EF-01 16 31201608 31201608 G T FUS Missense_Mutation p.R394L 0.18 tolerated(0.25) benign(0.077) TCGA-DD-A1EF-01 16 53878098 53878098 T A FTO Missense_Mutation p.H261Q 0.17 tolerated(0.65) benign(0.002) TCGA-DD-A1EF-01 16 67006590 67006590 G A CES3 Silent p.E487E 0.25 TCGA-DD-A1EF-01 17 10404577 10404577 C T MYH1 Silent p.L1196L 0.27 TCGA-DD-A1EF-01 17 11786904 11786904 C A DNAH9 Missense_Mutation p.S3603Y 0.21 possibly_damaging(0.702) TCGA-DD-A1EF-01 17 12819314 12819314 T A ARHGAP44 Missense_Mutation p.F125I 0.30 tolerated(0.37) benign(0.348) TCGA-DD-A1EF-01 17 2604781 2604781 C T CLUH Missense_Mutation p.G222R 0.34 deleterious(0.01) possibly_damaging(0.739) TCGA-DD-A1EF-01 17 43552916 43552916 G T PLEKHM1 Missense_Mutation p.A158D 0.07 deleterious(0.01) possibly_damaging(0.895) TCGA-DD-A1EF-01 17 7339378 7339378 C T TMEM102 Missense_Mutation p.A63V 0.36 deleterious(0) probably_damaging(0.914) TCGA-DD-A1EF-01 17 8021805 8021805 T C ALOXE3 Intron 0.31 TCGA-DD-A1EF-01 18 14105690 14105690 C T ZNF519 Silent p.Q283Q 0.15 TCGA-DD-A1EF-01 18 2795979 2795979 A T SMCHD1 Nonsense_Mutation p.K1918* 0.28 TCGA-DD-A1EF-01 18 28956907 28956907 T C DSG4 Silent p.L11L 0.36 TCGA-DD-A1EF-01 18 2925247 2925247 G C LPIN2 Missense_Mutation p.S638C 0.28 deleterious(0) possibly_damaging(0.897) TCGA-DD-A1EF-01 18 31314285 31314285 C T ASXL3 Missense_Mutation p.P330S 0.26 probably_damaging(1) TCGA-DD-A1EF-01 18 65180960 65180960 G A DSEL Missense_Mutation p.R306C 0.32 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EF-01 19 11141502 11141502 G A SMARCA4 Missense_Mutation p.G1160E 0.59 probably_damaging(1) TCGA-DD-A1EF-01 19 15063807 15063807 T C SLC1A6 Missense_Mutation p.I478V 0.18 deleterious(0) possibly_damaging(0.726) TCGA-DD-A1EF-01 19 15376412 15376412 T G BRD4 Missense_Mutation p.Q201P 0.13 unknown(0) TCGA-DD-A1EF-01 19 18321727 18321727 G A PDE4C 3'UTR 0.07 TCGA-DD-A1EF-01 19 21610089 21610089 A T ZNF493 3'UTR 0.70 TCGA-DD-A1EF-01 19 21910792 21910792 C G ZNF100 Splice_Site p.X108_splice 0.10 TCGA-DD-A1EF-01 19 22154328 22154328 T C ZNF208 Missense_Mutation p.K1170E 0.17 tolerated(0.33) benign(0.24) TCGA-DD-A1EF-01 19 23159320 23159320 T C ZNF728 Silent p.E273E 0.57 TCGA-DD-A1EF-01 19 23926971 23926971 G C ZNF681 Missense_Mutation p.Q461E 0.12 tolerated(0.25) benign(0.008) TCGA-DD-A1EF-01 19 23927977 23927977 T A ZNF681 Silent p.G125G 0.40 TCGA-DD-A1EF-01 19 408227 408227 G C C2CD4C Missense_Mutation p.D45E 0.08 tolerated(0.09) benign(0.326) TCGA-DD-A1EF-01 19 4408946 4408946 C T CHAF1A Silent p.A50A 0.11 TCGA-DD-A1EF-01 19 44590091 44590091 A C ZNF284 Missense_Mutation p.K154Q 0.08 tolerated(0.57) benign(0.001) TCGA-DD-A1EF-01 19 44890916 44890916 T C ZNF285 Silent p.S497S 0.54 TCGA-DD-A1EF-01 19 46525997 46525997 A T PGLYRP1 Missense_Mutation p.Y95N 0.07 deleterious(0) probably_damaging(1) TCGA-DD-A1EF-01 19 49814654 49814654 T C SLC6A16 5'UTR 0.11 TCGA-DD-A1EF-01 19 49956570 49956570 A - ALDH16A1 5'UTR 0.29 TCGA-DD-A1EF-01 19 51633303 51633303 C A SIGLEC9 Intron 0.53 TCGA-DD-A1EF-01 19 55106781 55106781 G A LILRA1 Missense_Mutation p.R192K 0.18 tolerated(0.06) possibly_damaging(0.811) TCGA-DD-A1EF-01 19 58563914 58563914 T C ZSCAN1 Silent p.S174S 0.09 TCGA-DD-A1EF-01 1 11204794 11204794 T C MTOR Missense_Mutation p.M1595V 0.66 deleterious(0) probably_damaging(0.966) TCGA-DD-A1EF-01 1 116563474 116563474 A G SLC22A15 Missense_Mutation p.E189G 0.41 deleterious(0) benign(0.336) TCGA-DD-A1EF-01 1 1322749 1322749 C T CCNL2 Silent p.E475E 0.33 TCGA-DD-A1EF-01 1 155160803 155160803 C T MUC1 Missense_Mutation p.V242I 0.17 tolerated(0.13) possibly_damaging(0.785) TCGA-DD-A1EF-01 1 155224577 155224577 A C FAM189B Missense_Mutation p.L31R 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-DD-A1EF-01 1 158725609 158725609 A G OR6K6 Missense_Mutation p.Q335R 0.14 tolerated(0.1) benign(0.001) TCGA-DD-A1EF-01 1 179621325 179621325 G A TDRD5 Missense_Mutation p.R718H 0.10 tolerated(0.56) benign(0.001) TCGA-DD-A1EF-01 1 197704850 197704850 T C DENND1B Intron 0.16 TCGA-DD-A1EF-01 1 198721876 198721876 A G PTPRC Missense_Mutation p.S1162G 0.13 tolerated(0.09) benign(0.057) TCGA-DD-A1EF-01 1 203468895 203468895 G T OPTC Silent p.L216L 0.60 TCGA-DD-A1EF-01 1 235904821 235904821 C T LYST Silent p.S2753S 0.09 TCGA-DD-A1EF-01 1 242035389 242035389 G A EXO1 Silent p.K441K 0.08 TCGA-DD-A1EF-01 1 245674408 245674408 A G KIF26B Intron 0.05 TCGA-DD-A1EF-01 1 247150232 247150232 A G ZNF695 3'UTR 0.14 TCGA-DD-A1EF-01 1 2535696 2535696 T C MMEL1 Missense_Mutation p.M281V 0.68 deleterious(0) probably_damaging(0.92) TCGA-DD-A1EF-01 1 55573092 55573092 C T USP24 Missense_Mutation p.E1528K 0.10 tolerated(0.4) benign(0.02) TCGA-DD-A1EF-01 20 30411376 30411376 C T MYLK2 Missense_Mutation p.A290V 0.08 tolerated(1) benign(0.031) TCGA-DD-A1EF-01 20 31016044 31016044 A G ASXL1 Silent p.E122E 0.12 TCGA-DD-A1EF-01 20 35757451 35757451 G A MROH8 Missense_Mutation p.A617V 0.11 deleterious(0.03) possibly_damaging(0.693) TCGA-DD-A1EF-01 20 50287725 50287725 C T ATP9A Missense_Mutation p.G370E 0.30 tolerated(0.13) benign(0.323) TCGA-DD-A1EF-01 20 8713939 8713939 A G PLCB1 Missense_Mutation p.Y648C 0.06 deleterious(0) probably_damaging(1) TCGA-DD-A1EF-01 21 15579205 15579206 - T LIPI Frame_Shift_Ins p.Y14Ifs*2 0.15 TCGA-DD-A1EF-01 21 16336940 16336940 T C NRIP1 3'UTR 0.33 TCGA-DD-A1EF-01 21 47531490 47531492 AAC - COL6A2 In_Frame_Del p.N36del 0.35 TCGA-DD-A1EF-01 22 26688528 26688528 T C SEZ6L Missense_Mutation p.V84A 0.21 tolerated_low_confidence(0.1) benign(0.005) TCGA-DD-A1EF-01 22 44465040 44465040 C T PARVB Intron 0.31 TCGA-DD-A1EF-01 2 179548789 179548789 C T TTN Missense_Mutation p.A10915T 0.64 TCGA-DD-A1EF-01 2 179575865 179575865 G C TTN Missense_Mutation p.S9366R 0.18 TCGA-DD-A1EF-01 2 204326584 204326584 G A RAPH1 Missense_Mutation p.A266V 0.05 probably_damaging(0.978) TCGA-DD-A1EF-01 2 228567037 228567037 C T SLC19A3 Splice_Site 0.11 TCGA-DD-A1EF-01 2 228884727 228884727 A T SPHKAP Silent p.I281I 0.13 TCGA-DD-A1EF-01 2 55473534 55473534 C T MTIF2 Missense_Mutation p.A349T 0.10 deleterious(0) probably_damaging(0.912) TCGA-DD-A1EF-01 2 74641896 74641896 G A C2orf81 Silent p.L443L 0.15 TCGA-DD-A1EF-01 2 89082254 89082254 C T ANKRD36BP2 RNA 0.45 TCGA-DD-A1EF-01 2 98928832 98928832 T A VWA3B 3'UTR 0.36 TCGA-DD-A1EF-01 3 108626723 108626723 T A GUCA1C 3'UTR 0.29 TCGA-DD-A1EF-01 3 111688738 111688738 A T PHLDB2 Missense_Mutation p.T1173S 0.31 deleterious(0) possibly_damaging(0.812) TCGA-DD-A1EF-01 3 112969411 112969411 C T BOC Missense_Mutation p.P36L 0.08 tolerated(0.25) benign(0.4) TCGA-DD-A1EF-01 3 121207657 121207657 G A POLQ Missense_Mutation p.P1374L 0.11 tolerated_low_confidence(0.3) benign(0.013) TCGA-DD-A1EF-01 3 121554071 121554071 A T EAF2 5'UTR 0.35 TCGA-DD-A1EF-01 3 129389440 129389440 G T TMCC1 Missense_Mutation p.P415Q 0.11 deleterious(0) probably_damaging(0.995) TCGA-DD-A1EF-01 3 140140017 140140017 G C CLSTN2 Missense_Mutation p.E230Q 0.09 tolerated(0.16) benign(0.051) TCGA-DD-A1EF-01 3 142215986 142215986 C T ATR Silent p.Q1869Q 0.42 TCGA-DD-A1EF-01 3 150873991 150873991 C T MED12L Silent p.A200A 0.32 TCGA-DD-A1EF-01 3 169557828 169557828 T C LRRC31 Missense_Mutation p.E534G 0.06 tolerated(0.11) benign(0.006) TCGA-DD-A1EF-01 3 184910999 184910999 A C EHHADH Missense_Mutation p.L396R 0.39 deleterious(0) probably_damaging(1) TCGA-DD-A1EF-01 3 33673843 33673843 C T CLASP2 Missense_Mutation p.A296T 0.34 deleterious(0.04) probably_damaging(0.996) TCGA-DD-A1EF-01 3 38135225 38135225 C T DLEC1 Missense_Mutation p.T629M 0.31 deleterious(0.04) benign(0.388) TCGA-DD-A1EF-01 3 4732940 4732940 G A ITPR1 Missense_Mutation p.R1299Q 0.33 deleterious(0) probably_damaging(0.997) TCGA-DD-A1EF-01 3 49215434 49215434 G A C3orf84 Silent p.L84L 0.56 TCGA-DD-A1EF-01 3 52440270 52440276 TGCTGCA - BAP1 Frame_Shift_Del p.L259Rfs*2 0.46 TCGA-DD-A1EF-01 3 57108184 57108184 G T SPATA12 Missense_Mutation p.E154D 0.07 deleterious_low_confidence(0.04) possibly_damaging(0.801) TCGA-DD-A1EF-01 4 10491907 10491907 T C CLNK 3'UTR 0.40 TCGA-DD-A1EF-01 4 144467138 144467138 A G SMARCA5 Missense_Mutation p.I820V 0.34 tolerated(0.1) benign(0.025) TCGA-DD-A1EF-01 4 146686272 146686272 A T ZNF827 Missense_Mutation p.M1033K 0.18 tolerated(0.23) probably_damaging(0.983) TCGA-DD-A1EF-01 4 153243996 153243996 C T FBXW7 3'UTR 0.39 TCGA-DD-A1EF-01 4 155278437 155278437 T C DCHS2 Missense_Mutation p.N245S 0.29 tolerated(0.8) benign(0.001) TCGA-DD-A1EF-01 4 16035130 16035130 A G PROM1 Silent p.I102I 0.27 TCGA-DD-A1EF-01 4 4275388 4275388 C T LYAR Missense_Mutation p.D281N 0.26 tolerated(0.35) benign(0.004) TCGA-DD-A1EF-01 4 436527 436527 T C ZNF721 Missense_Mutation p.R577G 0.16 deleterious(0.02) probably_damaging(0.988) TCGA-DD-A1EF-01 4 5170120 5170120 T A STK32B Missense_Mutation p.V68D 0.18 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EF-01 4 72338736 72338736 G A SLC4A4 Intron 0.38 TCGA-DD-A1EF-01 4 79428611 79428611 C T FRAS1 Missense_Mutation p.S3118F 0.28 benign(0.292) TCGA-DD-A1EF-01 4 89039357 89039357 T C ABCG2 Missense_Mutation p.I249V 0.34 deleterious(0) probably_damaging(0.983) TCGA-DD-A1EF-01 5 121358098 121358098 C G SRFBP1 Silent p.S367S 0.31 TCGA-DD-A1EF-01 5 140175842 140175842 C T PCDHA2 Silent p.G431G 0.13 TCGA-DD-A1EF-01 5 140188279 140188279 G A PCDHA4 Missense_Mutation p.A503T 0.31 tolerated_low_confidence(0.11) benign(0.055) TCGA-DD-A1EF-01 5 140723657 140723657 C T PCDHGA3 Silent p.L19L 0.25 TCGA-DD-A1EF-01 5 150922777 150922777 G A FAT2 Silent p.N2637N 0.33 TCGA-DD-A1EF-01 5 169484584 169484584 T C DOCK2 Missense_Mutation p.S1461P 0.15 deleterious(0.04) probably_damaging(0.915) TCGA-DD-A1EF-01 5 181677 181677 T C PLEKHG4B Missense_Mutation p.F1128S 0.23 deleterious(0.02) possibly_damaging(0.677) TCGA-DD-A1EF-01 5 52394293 52394293 C T MOCS2 3'UTR 0.30 TCGA-DD-A1EF-01 5 55083699 55083699 C T DDX4 Missense_Mutation p.A348V 0.21 deleterious(0.04) probably_damaging(0.977) TCGA-DD-A1EF-01 5 57790304 57790304 T C GAPT 5'UTR 0.25 TCGA-DD-A1EF-01 5 80562109 80562109 T C CKMT2 3'UTR 0.14 TCGA-DD-A1EF-01 6 117150115 117150115 C T GPRC6A Missense_Mutation p.C21Y 0.16 deleterious(0.02) probably_damaging(0.984) TCGA-DD-A1EF-01 6 136742909 136742909 C T MAP7 Silent p.K54K 0.25 TCGA-DD-A1EF-01 6 27839822 27839822 A G HIST1H3I Missense_Mutation p.M91T 0.48 tolerated_low_confidence(0.47) benign(0.001) TCGA-DD-A1EF-01 6 27925139 27925139 G A OR2B6 Missense_Mutation p.G41S 0.04 deleterious(0.01) benign(0.318) TCGA-DD-A1EF-01 6 32123651 32123651 C T PPT2 Missense_Mutation p.T152M 0.20 deleterious(0) probably_damaging(0.985) TCGA-DD-A1EF-01 6 33425045 33425045 G T ZBTB9 3'UTR 0.26 TCGA-DD-A1EF-01 6 6347594 6347594 G C SNAPC5P1 RNA 0.28 TCGA-DD-A1EF-01 7 100085893 100085893 C T NYAP1 Silent p.G183G 0.37 TCGA-DD-A1EF-01 7 100452001 100452001 G T SLC12A9 Splice_Site p.X61_splice 0.28 TCGA-DD-A1EF-01 7 100678400 100678400 G T MUC17 Nonsense_Mutation p.E1235* 0.22 TCGA-DD-A1EF-01 7 129520790 129520790 A G UBE2H Silent p.V25V 0.31 TCGA-DD-A1EF-01 7 16720997 16720997 G T BZW2 Nonsense_Mutation p.E103* 0.17 TCGA-DD-A1EF-01 7 94294071 94294071 A C PEG10 3'UTR 0.20 TCGA-DD-A1EF-01 8 106331179 106331179 C T ZFPM2 Nonsense_Mutation p.R4* 0.14 TCGA-DD-A1EF-01 8 108297062 108297062 G T ANGPT1 Silent p.P351P 0.14 TCGA-DD-A1EF-01 8 131797673 131797673 C T ADCY8 Missense_Mutation p.G1037S 0.10 deleterious(0) benign(0.001) TCGA-DD-A1EF-01 8 133961019 133961019 A G TG Splice_Site p.X1745_splice 0.23 TCGA-DD-A1EF-01 8 13948074 13948074 A T SGCZ Missense_Mutation p.S273T 0.43 tolerated(0.57) benign(0.003) TCGA-DD-A1EF-01 8 37633525 37633525 C A PROSC Missense_Mutation p.F229L 0.12 deleterious(0.02) possibly_damaging(0.612) TCGA-DD-A1EF-01 9 104171115 104171115 G A ZNF189 Silent p.R355R 0.22 TCGA-DD-A1EF-01 9 1056606 1056606 G T DMRT2 Missense_Mutation p.R340I 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DD-A1EF-01 9 105767037 105767037 T C CYLC2 Silent p.L81L 0.30 TCGA-DD-A1EF-01 9 107379994 107379994 T C OR13C9 Silent p.V164V 0.31 TCGA-DD-A1EF-01 9 114820918 114820918 A T SUSD1 Silent p.S633S 0.27 TCGA-DD-A1EF-01 9 116151330 116151330 C G ALAD Missense_Mutation p.W286C 0.15 tolerated(0.18) benign(0.018) TCGA-DD-A1EF-01 9 141000176 141000176 T C CACNA1B Missense_Mutation p.I1782T 0.09 deleterious(0.01) benign(0.24) TCGA-DD-A1EF-01 9 21187344 21187344 C G IFNA4 Missense_Mutation p.E63Q 0.31 tolerated(1) benign(0) TCGA-DD-A1EF-01 X 103216806 103216806 G A TMSB15B 5'Flank 0.10 TCGA-DD-A1EF-01 X 123517526 123517526 A T TENM1 Missense_Mutation p.Y2419N 0.21 tolerated(1) benign(0.002) TCGA-DD-A1EF-01 X 135453612 135453612 A G GPR112 Missense_Mutation p.M2508V 0.45 tolerated(0.23) benign(0.017) TCGA-DD-A1EF-01 X 153222832 153222832 C T HCFC1 Silent p.K762K 0.43 TCGA-DD-A1EF-01 X 70322059 70322059 C T FOXO4 3'UTR 0.45 TCGA-DD-A1EH-01 10 52008360 52008360 C T ASAH2 Missense_Mutation p.R4H 0.35 tolerated_low_confidence(0.1) benign(0.011) TCGA-DD-A1EH-01 11 10821282 10821282 C T EIF4G2 Missense_Mutation p.R714H 0.15 deleterious(0) possibly_damaging(0.882) TCGA-DD-A1EH-01 11 124763622 124763622 C A ROBO4 Silent p.L503L 0.38 TCGA-DD-A1EH-01 11 134029862 134029862 G A NCAPD3 Silent p.V1264V 0.49 TCGA-DD-A1EH-01 11 62566040 62566040 G C NXF1 Missense_Mutation p.R342G 0.49 deleterious(0.04) possibly_damaging(0.459) TCGA-DD-A1EH-01 11 76917166 76917166 G A MYO7A Silent p.P1887P 0.38 TCGA-DD-A1EH-01 12 104062497 104062497 C T STAB2 Missense_Mutation p.A721V 0.08 tolerated(0.34) benign(0.003) TCGA-DD-A1EH-01 13 24465321 24465321 A G C1QTNF9B 3'Flank 0.37 TCGA-DD-A1EH-01 14 101348750 101348750 G A RTL1 Silent p.N792N 0.44 TCGA-DD-A1EH-01 14 105858084 105858084 G A PACS2 Missense_Mutation p.G746R 0.37 tolerated(0.09) possibly_damaging(0.816) TCGA-DD-A1EH-01 14 64989700 64989700 A G ZBTB1 Missense_Mutation p.N493S 0.46 tolerated(0.76) benign(0.001) TCGA-DD-A1EH-01 14 77606003 77606003 G A ZDHHC22 Missense_Mutation p.L27F 0.33 tolerated(0.48) benign(0.002) TCGA-DD-A1EH-01 14 81744756 81744756 G A STON2 Missense_Mutation p.T300M 0.14 deleterious_low_confidence(0.03) benign(0.157) TCGA-DD-A1EH-01 15 30012108 30012108 G A TJP1 Missense_Mutation p.P959L 0.44 deleterious_low_confidence(0.02) benign(0.005) TCGA-DD-A1EH-01 15 50474581 50474581 G A SLC27A2 5'UTR 0.48 TCGA-DD-A1EH-01 16 347071 347072 - G AXIN1 Frame_Shift_Ins p.R647Pfs*17 0.49 TCGA-DD-A1EH-01 16 50357576 50357576 A C BRD7 Nonsense_Mutation p.Y455* 0.67 TCGA-DD-A1EH-01 17 45387555 45387555 G C ITGB3 Silent p.T784T 0.41 TCGA-DD-A1EH-01 17 48614425 48614425 C T EPN3 Missense_Mutation p.R170C 0.40 deleterious(0.01) possibly_damaging(0.847) TCGA-DD-A1EH-01 17 52991114 52991114 G C TOM1L1 Missense_Mutation p.W126C 0.47 deleterious(0) probably_damaging(1) TCGA-DD-A1EH-01 17 61908431 61908431 C T PSMC5 Missense_Mutation p.R239W 0.30 deleterious(0) probably_damaging(0.982) TCGA-DD-A1EH-01 18 48190630 48190630 C T MAPK4 Missense_Mutation p.A101V 0.38 tolerated(1) benign(0.007) TCGA-DD-A1EH-01 1 152785040 152785040 G T LCE1B Missense_Mutation p.V40F 0.22 tolerated_low_confidence(0.09) unknown(0) TCGA-DD-A1EH-01 1 248366773 248366773 T C OR2M3 Missense_Mutation p.L135P 0.21 deleterious(0) probably_damaging(0.946) TCGA-DD-A1EH-01 1 27105550 27105550 C T ARID1A Nonsense_Mutation p.R1721* 0.50 TCGA-DD-A1EH-01 1 27106893 27106894 - T ARID1A Frame_Shift_Ins p.V2169Cfs*56 0.17 TCGA-DD-A1EH-01 20 3655233 3655233 A G ADAM33 Missense_Mutation p.L173P 0.10 tolerated(0.33) benign(0.008) TCGA-DD-A1EH-01 20 45174216 45174216 C T OCSTAMP Missense_Mutation p.R266Q 0.28 tolerated(0.55) benign(0.001) TCGA-DD-A1EH-01 2 103068506 103068506 G T IL18RAP Missense_Mutation p.M555I 0.42 tolerated(0.42) benign(0.009) TCGA-DD-A1EH-01 2 160833216 160833216 A G PLA2R1 Missense_Mutation p.I806T 0.47 tolerated(0.35) benign(0.211) TCGA-DD-A1EH-01 2 218696257 218696257 C T TNS1 Silent p.P973P 0.48 TCGA-DD-A1EH-01 2 231865207 231865207 A T SPATA3 Missense_Mutation p.Q143L 0.41 tolerated(0.23) benign(0.145) TCGA-DD-A1EH-01 2 237300683 237300683 T - IQCA1 Frame_Shift_Del p.N450Tfs*2 0.32 TCGA-DD-A1EH-01 2 54858605 54858605 C T SPTBN1 Missense_Mutation p.R1141W 0.40 deleterious(0) probably_damaging(0.953) TCGA-DD-A1EH-01 3 164750329 164750329 G A SI Missense_Mutation p.T906I 0.34 tolerated(0.06) benign(0.009) TCGA-DD-A1EH-01 4 185320192 185320192 C A IRF2 Nonsense_Mutation p.E191* 0.82 TCGA-DD-A1EH-01 5 127681089 127681089 A T FBN2 Silent p.A1059A 0.30 TCGA-DD-A1EH-01 5 145641135 145641135 G A RBM27 Silent p.R652R 0.33 TCGA-DD-A1EH-01 5 82833574 82833574 C T VCAN Silent p.P1584P 0.27 TCGA-DD-A1EH-01 6 107372489 107372489 G A C6orf203 3'UTR 0.13 TCGA-DD-A1EH-01 6 12125147 12125148 - A HIVEP1 Frame_Shift_Ins p.N1708Kfs*38 0.18 TCGA-DD-A1EH-01 6 125584076 125584076 C T TPD52L1 Missense_Mutation p.R195W 0.67 deleterious_low_confidence(0.02) benign(0.002) TCGA-DD-A1EH-01 6 129927037 129927037 G A ARHGAP18 Silent p.N450N 0.74 TCGA-DD-A1EH-01 6 75893307 75893307 G T COL12A1 Missense_Mutation p.S450R 0.63 probably_damaging(0.998) TCGA-DD-A1EH-01 7 107315471 107315471 G T SLC26A4 Missense_Mutation p.A228S 0.08 deleterious(0.01) probably_damaging(1) TCGA-DD-A1EH-01 7 135612733 135612733 C T AC015987.2 3'UTR 0.40 TCGA-DD-A1EH-01 7 41729607 41729607 G A INHBA Missense_Mutation p.R308C 0.58 deleterious(0) probably_damaging(0.953) TCGA-DD-A1EH-01 7 64167564 64167564 T C ZNF107 Silent p.H294H 0.50 TCGA-DD-A1EH-01 8 105361088 105361088 C A DCSTAMP Missense_Mutation p.T103K 0.40 deleterious(0) possibly_damaging(0.852) TCGA-DD-A1EH-01 9 77339554 77339554 G T TRPM6 Missense_Mutation p.S2015Y 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.736) TCGA-DD-A1EH-01 9 79867172 79867172 G A VPS13A Missense_Mutation p.R731Q 0.46 deleterious(0) probably_damaging(0.997) TCGA-DD-A1EH-01 X 20252926 20252926 G A RPS6KA3 Nonsense_Mutation p.Q26* 0.84 TCGA-DD-A1EI-01 10 123239050 123239050 T C FGFR2 3'Flank 0.23 TCGA-DD-A1EI-01 10 14976379 14976379 C T DCLRE1C Silent p.Q226Q 0.31 TCGA-DD-A1EI-01 10 64148204 64148204 G T ZNF365 Missense_Mutation p.V265F 0.12 tolerated(0.23) benign(0.023) TCGA-DD-A1EI-01 10 73511007 73511007 G A C10orf54 3'UTR 0.09 TCGA-DD-A1EI-01 11 58207461 58207461 G T OR5B12 Missense_Mutation p.T55N 0.26 deleterious_low_confidence(0.02) benign(0.101) TCGA-DD-A1EI-01 11 60641219 60641219 T G ZP1 Missense_Mutation p.S515A 0.23 tolerated(0.11) benign(0.338) TCGA-DD-A1EI-01 11 62159568 62159568 G A ASRGL1 Missense_Mutation p.A247T 0.20 deleterious(0) probably_damaging(0.989) TCGA-DD-A1EI-01 12 123825580 123825580 T G SBNO1 Missense_Mutation p.R202S 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.655) TCGA-DD-A1EI-01 12 16516984 16516984 A G MGST1 3'UTR 0.22 TCGA-DD-A1EI-01 12 21926286 21926286 T C KCNJ8 Missense_Mutation p.I89V 0.10 tolerated(0.45) benign(0.002) TCGA-DD-A1EI-01 12 48359720 48359720 C T TMEM106C Silent p.G117G 0.06 TCGA-DD-A1EI-01 12 53900573 53900573 A G NPFF Missense_Mutation p.F110S 0.25 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EI-01 12 7281340 7281340 A T RBP5 Missense_Mutation p.F11Y 0.22 deleterious(0.03) benign(0.092) TCGA-DD-A1EI-01 14 96875279 96875279 G A AK7 Splice_Site p.X166_splice 0.13 TCGA-DD-A1EI-01 15 50897161 50897161 T G TRPM7 Missense_Mutation p.I964L 0.13 tolerated(0.18) benign(0.423) TCGA-DD-A1EI-01 16 27487845 27487845 A G GTF3C1 Missense_Mutation p.L1427P 0.10 deleterious(0) probably_damaging(0.998) TCGA-DD-A1EI-01 16 847042 847042 C T CHTF18 Missense_Mutation p.H895Y 0.21 deleterious(0) possibly_damaging(0.732) TCGA-DD-A1EI-01 17 17723725 17723725 A G SREBF1 Missense_Mutation p.S98P 0.08 tolerated(0.17) benign(0.024) TCGA-DD-A1EI-01 17 20767808 20767808 C G CCDC144NL 3'UTR 0.55 TCGA-DD-A1EI-01 17 38068752 38068752 T C GSDMB Splice_Site p.X79_splice 0.25 TCGA-DD-A1EI-01 17 41063458 41063459 - C G6PC 3'UTR 0.23 TCGA-DD-A1EI-01 17 41932594 41932594 C T CD300LG Missense_Mutation p.R247C 0.22 deleterious(0) probably_damaging(0.995) TCGA-DD-A1EI-01 17 59479112 59479112 A T TBX2 Missense_Mutation p.M155L 0.13 deleterious(0.01) possibly_damaging(0.887) TCGA-DD-A1EI-01 17 67110945 67110945 A - ABCA6 Frame_Shift_Del p.F580Lfs*4 0.23 TCGA-DD-A1EI-01 17 7578419 7578419 C A TP53 Nonsense_Mutation p.E171* 0.35 TCGA-DD-A1EI-01 17 79791780 79791780 T A PPP1R27 Intron 0.46 TCGA-DD-A1EI-01 18 60242702 60242702 A C ZCCHC2 Missense_Mutation p.N1130H 0.27 deleterious(0) possibly_damaging(0.664) TCGA-DD-A1EI-01 19 39408640 39408640 C A SARS2 Missense_Mutation p.C326F 0.31 deleterious(0) probably_damaging(0.985) TCGA-DD-A1EI-01 19 43866283 43866283 A G CD177 3'UTR 0.09 TCGA-DD-A1EI-01 19 49979723 49979723 G A FLT3LG Missense_Mutation p.R81H 0.26 deleterious(0.02) possibly_damaging(0.526) TCGA-DD-A1EI-01 1 103491141 103491141 T C COL11A1 Missense_Mutation p.Y309C 0.15 probably_damaging(0.971) TCGA-DD-A1EI-01 1 150974678 150974679 - GAG FAM63A In_Frame_Ins p.P186dup 0.27 TCGA-DD-A1EI-01 1 151262327 151262328 - C ZNF687 Frame_Shift_Ins p.R939Pfs*36 0.18 TCGA-DD-A1EI-01 1 152692135 152692135 C - C1orf68 Frame_Shift_Del p.P47Lfs*10 0.21 TCGA-DD-A1EI-01 1 155308071 155308071 T G ASH1L Missense_Mutation p.N2871T 0.29 tolerated_low_confidence(0.47) benign(0.009) TCGA-DD-A1EI-01 1 160461021 160461021 A G SLAMF6 Silent p.T180T 0.29 TCGA-DD-A1EI-01 1 196274453 196274458 TAATAC - KCNT2 In_Frame_Del p.S834_I835del 0.19 TCGA-DD-A1EI-01 1 47571829 47571829 C G CYP4Z1 Missense_Mutation p.T366R 0.35 deleterious(0) probably_damaging(0.978) TCGA-DD-A1EI-01 1 67787396 67787396 C A IL12RB2 Missense_Mutation p.S63Y 0.32 deleterious(0) possibly_damaging(0.513) TCGA-DD-A1EI-01 20 21687580 21687580 G A PAX1 Missense_Mutation p.G264D 0.12 deleterious(0.02) possibly_damaging(0.778) TCGA-DD-A1EI-01 20 43093812 43093812 C A C20orf62 Silent p.S36S 0.30 TCGA-DD-A1EI-01 20 43851219 43851219 A T SEMG2 Missense_Mutation p.I316F 0.25 tolerated(0.08) possibly_damaging(0.624) TCGA-DD-A1EI-01 22 18028982 18028982 A G CECR2 Silent p.A1314A 0.23 TCGA-DD-A1EI-01 22 45289355 45289355 G A PHF21B Silent p.S314S 0.18 TCGA-DD-A1EI-01 2 50758388 50758388 C T NRXN1 Missense_Mutation p.R815H 0.19 deleterious(0) probably_damaging(0.983) TCGA-DD-A1EI-01 2 60688821 60688821 A C BCL11A Missense_Mutation p.L409R 0.23 deleterious(0) probably_damaging(0.928) TCGA-DD-A1EI-01 2 88327723 88327723 A G KRCC1 Silent p.F120F 0.27 TCGA-DD-A1EI-01 3 147131462 147131462 A G ZIC1 3'UTR 0.31 TCGA-DD-A1EI-01 3 154886382 154886382 A C MME Missense_Mutation p.N628H 0.25 deleterious(0) probably_damaging(0.994) TCGA-DD-A1EI-01 3 50231028 50231028 G A GNAT1 Nonsense_Mutation p.W127* 0.14 TCGA-DD-A1EI-01 3 52393977 52393977 C T DNAH1 Nonsense_Mutation p.Q1485* 0.29 TCGA-DD-A1EI-01 4 155719372 155719372 A G RBM46 Silent p.A187A 0.20 TCGA-DD-A1EI-01 4 77677614 77677618 TTCTA - SHROOM3 Frame_Shift_Del p.K1576Dfs*17 0.17 TCGA-DD-A1EI-01 5 112364451 112364451 A G MCC Intron 0.10 TCGA-DD-A1EI-01 5 138739744 138739744 C A SPATA24 Silent p.A2A 0.29 TCGA-DD-A1EI-01 5 41065451 41065451 C T MROH2B Missense_Mutation p.E115K 0.12 tolerated(0.09) benign(0.336) TCGA-DD-A1EI-01 5 41065590 41065590 C A MROH2B Missense_Mutation p.M68I 0.10 tolerated(1) benign(0) TCGA-DD-A1EI-01 5 41065593 41065593 C G MROH2B Splice_Site p.X68_splice 0.10 TCGA-DD-A1EI-01 5 73048919 73048919 G T ARHGEF28 Missense_Mutation p.A123S 0.22 tolerated(0.19) benign(0.018) TCGA-DD-A1EI-01 5 96358073 96358073 A G LNPEP Missense_Mutation p.M816V 0.29 deleterious(0.03) benign(0.002) TCGA-DD-A1EI-01 6 109768571 109768571 G A MICAL1 Nonsense_Mutation p.Q687* 0.14 TCGA-DD-A1EI-01 6 76596568 76596568 G A MYO6 Missense_Mutation p.G839S 0.13 tolerated(0.31) unknown(0) TCGA-DD-A1EI-01 7 102016741 102016741 A T PRKRIP1 5'UTR 0.07 TCGA-DD-A1EI-01 7 103848403 103848403 G A ORC5 5'UTR 0.16 TCGA-DD-A1EI-01 7 149485526 149485526 G A SSPO RNA 0.24 TCGA-DD-A1EI-01 7 73020297 73020297 T C MLXIPL Missense_Mutation p.T255A 0.25 deleterious(0) possibly_damaging(0.626) TCGA-DD-A1EI-01 7 92158153 92158153 G T RBM48 Missense_Mutation p.G9V 0.28 tolerated(0.1) benign(0.368) TCGA-DD-A1EI-01 7 99032672 99032672 C T ATP5J2-PTCD1 Missense_Mutation p.S114N 0.40 tolerated(0.14) benign(0.022) TCGA-DD-A1EI-01 8 110131669 110131669 C A TRHR Silent p.S394S 0.22 TCGA-DD-A1EI-01 8 134477129 134477129 G C ST3GAL1 Missense_Mutation p.P192R 0.53 probably_damaging(1) TCGA-DD-A1EI-01 8 195803 195803 G A ZNF596 Missense_Mutation p.C319Y 0.35 tolerated(1) benign(0.078) TCGA-DD-A1EI-01 8 90937753 90937753 T C OSGIN2 Missense_Mutation p.I548T 0.58 deleterious_low_confidence(0.01) benign(0.131) TCGA-DD-A1EI-01 8 90937791 90937791 T G OSGIN2 3'UTR 0.50 TCGA-DD-A1EI-01 9 109688981 109688981 T C ZNF462 Missense_Mutation p.C930R 0.27 probably_damaging(0.999) TCGA-DD-A1EI-01 X 140993326 140993326 G C MAGEC1 Missense_Mutation p.D46H 0.42 deleterious_low_confidence(0.01) probably_damaging(0.92) TCGA-DD-A1EI-01 X 144904543 144904543 C A SLITRK2 Silent p.G200G 0.41 TCGA-DD-A1EI-01 X 79699930 79699930 T C FAM46D 3'UTR 0.26 TCGA-DD-A1EI-01 Y 4968285 4968285 C A PCDH11Y Missense_Mutation p.P889Q 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-DD-A1EJ-01 10 71175920 71175920 C T TACR2 Missense_Mutation p.V54I 0.16 tolerated(0.05) possibly_damaging(0.447) TCGA-DD-A1EJ-01 10 92508894 92508894 C T HTR7 Missense_Mutation p.V333I 0.28 deleterious(0.02) probably_damaging(0.958) TCGA-DD-A1EJ-01 11 1077628 1077628 G A MUC2 Silent p.L126L 0.27 TCGA-DD-A1EJ-01 11 119077309 119077309 A G CBL Missense_Mutation p.K61R 0.12 tolerated(0.19) benign(0.07) TCGA-DD-A1EJ-01 11 19955620 19955620 C G NAV2 Silent p.S633S 0.57 TCGA-DD-A1EJ-01 11 5474986 5474986 C T OR51I2 Missense_Mutation p.R90C 0.22 deleterious(0) possibly_damaging(0.614) TCGA-DD-A1EJ-01 11 60893315 60893315 T A CD5 Splice_Site 0.50 TCGA-DD-A1EJ-01 11 76969478 76969478 C T GDPD4 Missense_Mutation p.D273N 0.56 tolerated(0.26) benign(0.011) TCGA-DD-A1EJ-01 11 77672039 77672039 T A INTS4 Missense_Mutation p.D206V 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-DD-A1EJ-01 12 118848953 118848953 A G SUDS3 Silent p.G293G 0.14 TCGA-DD-A1EJ-01 12 14959587 14959587 C G SMCO3 Missense_Mutation p.E10Q 0.76 tolerated(0.26) benign(0.009) TCGA-DD-A1EJ-01 12 41327519 41327519 G A CNTN1 Nonsense_Mutation p.W275* 0.07 TCGA-DD-A1EJ-01 12 55420793 55420793 T C NEUROD4 Silent p.S190S 0.17 TCGA-DD-A1EJ-01 13 45010910 45010910 C G TSC22D1 Intron 0.29 TCGA-DD-A1EJ-01 13 84454187 84454187 G A SLITRK1 Silent p.L486L 0.21 TCGA-DD-A1EJ-01 13 96599294 96599294 T C UGGT2 Silent p.V558V 0.40 TCGA-DD-A1EJ-01 15 48063289 48063289 C A SEMA6D Missense_Mutation p.N843K 0.32 tolerated(0.05) benign(0.146) TCGA-DD-A1EJ-01 15 52476791 52476791 T A GNB5 Missense_Mutation p.K28M 0.47 tolerated_low_confidence(0.09) benign(0.049) TCGA-DD-A1EJ-01 16 46991020 46991020 C A DNAJA2 Missense_Mutation p.R387M 0.46 deleterious(0.01) probably_damaging(0.91) TCGA-DD-A1EJ-01 16 71065621 71065621 T C HYDIN Missense_Mutation p.K910R 0.08 probably_damaging(0.953) TCGA-DD-A1EJ-01 17 18694221 18694221 A G TVP23B Silent p.A36A 0.11 TCGA-DD-A1EJ-01 17 32956067 32956067 C A TMEM132E Missense_Mutation p.D304E 0.18 deleterious(0.02) benign(0.365) TCGA-DD-A1EJ-01 17 3563771 3563771 C T CTNS Intron 0.35 TCGA-DD-A1EJ-01 17 39958946 39958946 G A LEPREL4 3'UTR 0.75 TCGA-DD-A1EJ-01 17 41383337 41383337 C T LINC00854 RNA 0.71 TCGA-DD-A1EJ-01 17 41477789 41477789 A C ARL4D 3'UTR 0.27 TCGA-DD-A1EJ-01 17 64222231 64222231 G A APOH Missense_Mutation p.P85S 0.69 tolerated(0.08) probably_damaging(0.991) TCGA-DD-A1EJ-01 17 65214794 65214794 C A HELZ Missense_Mutation p.D43Y 0.19 tolerated_low_confidence(0.09) benign(0.005) TCGA-DD-A1EJ-01 18 29867589 29867589 T C GAREM Missense_Mutation p.H324R 0.24 tolerated(1) benign(0.004) TCGA-DD-A1EJ-01 18 43435550 43435550 G C EPG5 Silent p.P2515P 0.16 TCGA-DD-A1EJ-01 18 67992585 67992606 AGATGAGGGGATGTATCCTTTG CA SOCS6 Frame_Shift_Del p.L227Ffs*33 0.56 TCGA-DD-A1EJ-01 18 67992606 67992606 G A SOCS6 Silent p.L234L 0.34 TCGA-DD-A1EJ-01 19 1004576 1004576 G A GRIN3B Missense_Mutation p.S359N 0.26 tolerated(0.28) benign(0.015) TCGA-DD-A1EJ-01 19 16770916 16770916 G T SMIM7 Silent p.I2I 0.25 TCGA-DD-A1EJ-01 19 16770917 16770917 A T SMIM7 Missense_Mutation p.I2N 0.25 deleterious(0) benign(0.354) TCGA-DD-A1EJ-01 19 19744903 19744903 T C GMIP Silent p.A727A 0.12 TCGA-DD-A1EJ-01 19 54760149 54760149 C T LILRB5 Missense_Mutation p.G138R 0.28 tolerated(0.09) possibly_damaging(0.58) TCGA-DD-A1EJ-01 1 100111832 100111832 C A PALMD 5'UTR 0.41 TCGA-DD-A1EJ-01 1 174517120 174517120 G T RABGAP1L Intron 0.21 TCGA-DD-A1EJ-01 1 211093326 211093326 T C KCNH1 Missense_Mutation p.E373G 0.21 deleterious(0) probably_damaging(0.991) TCGA-DD-A1EJ-01 1 231830097 231830097 C A DISC1 Missense_Mutation p.T198N 0.20 tolerated(0.16) benign(0.385) TCGA-DD-A1EJ-01 1 27739169 27739169 C T WASF2 Missense_Mutation p.V241M 0.39 tolerated(0.39) unknown(0) TCGA-DD-A1EJ-01 1 43637633 43637633 T C EBNA1BP2 Missense_Mutation p.D80G 0.09 deleterious(0.04) benign(0.138) TCGA-DD-A1EJ-01 1 44069357 44069357 A G PTPRF Missense_Mutation p.E845G 0.08 tolerated(0.15) possibly_damaging(0.861) TCGA-DD-A1EJ-01 1 66723358 66723358 T G PDE4B Missense_Mutation p.F169V 0.65 deleterious(0) possibly_damaging(0.698) TCGA-DD-A1EJ-01 1 90487903 90487903 A C ZNF326 Missense_Mutation p.K467T 0.19 deleterious(0) possibly_damaging(0.478) TCGA-DD-A1EJ-01 21 33974647 33974647 T C AP000275.65 Intron 0.32 TCGA-DD-A1EJ-01 22 24037416 24037416 C T RGL4 Intron 0.45 TCGA-DD-A1EJ-01 22 33960897 33960897 C T LARGE Missense_Mutation p.D242N 0.38 deleterious(0) possibly_damaging(0.908) TCGA-DD-A1EJ-01 22 43024254 43024254 C T CYB5R3 Missense_Mutation p.A156T 0.11 tolerated(0.1) benign(0.005) TCGA-DD-A1EJ-01 22 50988994 50988994 G C KLHDC7B 3'UTR 0.58 TCGA-DD-A1EJ-01 2 179559565 179559565 C G TTN Missense_Mutation p.V10447L 0.37 TCGA-DD-A1EJ-01 2 27325451 27325451 G T CGREF1 Missense_Mutation p.S30Y 0.21 deleterious(0.01) possibly_damaging(0.706) TCGA-DD-A1EJ-01 2 45233509 45233509 A T SIX2 Missense_Mutation p.S226T 0.71 tolerated(0.06) benign(0.155) TCGA-DD-A1EJ-01 2 48809395 48809395 G A STON1-GTF2A1L Silent p.V541V 0.15 TCGA-DD-A1EJ-01 3 111393914 111393914 G A PLCXD2 5'UTR 0.36 TCGA-DD-A1EJ-01 3 124165646 124165646 C G KALRN Missense_Mutation p.L1154V 0.38 deleterious(0.02) benign(0.101) TCGA-DD-A1EJ-01 3 125313601 125313605 CTCTC - OSBPL11 Frame_Shift_Del p.E14Rfs*25 0.21 TCGA-DD-A1EJ-01 3 128516808 128516808 A G RAB7A Missense_Mutation p.N26D 0.15 deleterious(0.02) benign(0.129) TCGA-DD-A1EJ-01 3 148559613 148559613 G A CPB1 Missense_Mutation p.G160S 0.44 tolerated(0.14) probably_damaging(1) TCGA-DD-A1EJ-01 3 189349323 189349323 C T TP63 Missense_Mutation p.R7W 0.08 deleterious_low_confidence(0.04) benign(0.028) TCGA-DD-A1EJ-01 3 193061790 193061790 G A ATP13A5 Missense_Mutation p.P290L 0.45 deleterious(0.01) possibly_damaging(0.456) TCGA-DD-A1EJ-01 3 195704091 195704091 T G SDHAP1 RNA 0.36 TCGA-DD-A1EJ-01 3 41268766 41268766 A T CTNNB1 Missense_Mutation p.K335I 0.50 deleterious(0) probably_damaging(0.957) TCGA-DD-A1EJ-01 3 53707151 53707151 C T CACNA1D Intron 0.50 TCGA-DD-A1EJ-01 3 57646514 57646514 G A DENND6A Silent p.H224H 0.42 TCGA-DD-A1EJ-01 3 86114753 86114753 A G CADM2 Splice_Site p.X357_splice 0.44 TCGA-DD-A1EJ-01 4 6335429 6335429 G A PPP2R2C Missense_Mutation p.R274C 0.26 deleterious(0.02) possibly_damaging(0.687) TCGA-DD-A1EJ-01 5 15937055 15937055 C - FBXL7 Frame_Shift_Del p.P413Lfs*13 0.22 TCGA-DD-A1EJ-01 5 58147311 58147311 G A RAB3C 3'UTR 0.45 TCGA-DD-A1EJ-01 6 129637033 129637033 G A LAMA2 Missense_Mutation p.V1288I 0.21 tolerated(0.24) benign(0.008) TCGA-DD-A1EJ-01 6 20490696 20490697 - T E2F3 3'UTR 0.11 TCGA-DD-A1EJ-01 6 31597547 31597547 C T PRRC2A Missense_Mutation p.P727S 0.63 possibly_damaging(0.641) TCGA-DD-A1EJ-01 6 33166198 33166198 G - RXRB Frame_Shift_Del p.P176Lfs*4 0.35 TCGA-DD-A1EJ-01 6 36447368 36447368 G T KCTD20 Missense_Mutation p.D180Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-DD-A1EJ-01 6 56489341 56489341 A G DST Missense_Mutation p.L1102P 0.11 probably_damaging(0.953) TCGA-DD-A1EJ-01 7 121684588 121684588 C T PTPRZ1 Missense_Mutation p.P2017L 0.18 deleterious(0.02) benign(0.004) TCGA-DD-A1EJ-01 7 143039472 143039472 A G CLCN1 Missense_Mutation p.T602A 0.36 deleterious(0.02) possibly_damaging(0.469) TCGA-DD-A1EJ-01 7 48318518 48318518 T A ABCA13 Nonsense_Mutation p.L2576* 0.10 TCGA-DD-A1EJ-01 7 73020290 73020290 A G MLXIPL Missense_Mutation p.F257S 0.49 deleterious(0) possibly_damaging(0.898) TCGA-DD-A1EJ-01 7 83021890 83021890 T C SEMA3E Missense_Mutation p.T550A 0.50 tolerated(0.52) benign(0.005) TCGA-DD-A1EJ-01 7 94232701 94232701 T A SGCE Silent p.P242P 0.37 TCGA-DD-A1EJ-01 8 113347573 113347574 - A CSMD3 Frame_Shift_Ins p.V2384Cfs*22 0.27 TCGA-DD-A1EJ-01 8 144698895 144698895 T C TSTA3 Splice_Site 0.57 TCGA-DD-A1EJ-01 8 67067941 67067941 A C TRIM55 Intron 0.47 TCGA-DD-A1EJ-01 9 137328351 137328351 C T RXRA Missense_Mutation p.S427F 0.29 deleterious(0) probably_damaging(1) TCGA-DD-A1EJ-01 9 73027906 73027906 G C KLF9 Missense_Mutation p.S125C 0.28 tolerated(0.1) benign(0.237) TCGA-DD-A1EJ-01 9 84530717 84530717 C T SPATA31D5P RNA 0.32 TCGA-DD-A1EJ-01 9 90318036 90318036 G A DAPK1 Silent p.L988L 0.29 TCGA-DD-A1EJ-01 X 5811266 5811266 G A NLGN4X Silent p.V681V 0.38 TCGA-DD-A1EJ-01 X 70443636 70443637 - TCATCT GJB1 In_Frame_Ins p.I30_F31dup 0.43 TCGA-DD-A1EK-01 10 71026553 71026553 A C HKDC1 3'UTR 0.33 TCGA-DD-A1EK-01 10 93722349 93722349 C G BTAF1 Missense_Mutation p.Q440E 0.40 tolerated(0.94) benign(0.004) TCGA-DD-A1EK-01 11 432029 432029 C T ANO9 Missense_Mutation p.V126I 0.33 tolerated(1) benign(0.016) TCGA-DD-A1EK-01 11 64658908 64658908 A C ATG2A 3'Flank 0.30 TCGA-DD-A1EK-01 12 114386746 114386746 C T RBM19 Missense_Mutation p.G390R 0.36 tolerated(0.24) benign(0.002) TCGA-DD-A1EK-01 12 43792900 43792900 C A ADAMTS20 Missense_Mutation p.C1474F 0.35 deleterious(0) probably_damaging(1) TCGA-DD-A1EK-01 12 49170256 49170256 T C ADCY6 Missense_Mutation p.N497S 0.39 deleterious(0) possibly_damaging(0.788) TCGA-DD-A1EK-01 12 6692504 6692504 T C CHD4 Missense_Mutation p.E1307G 0.34 deleterious(0) probably_damaging(0.913) TCGA-DD-A1EK-01 13 52548363 52548363 G A ATP7B Silent p.A331A 0.20 TCGA-DD-A1EK-01 14 42357103 42357103 A T LRFN5 Missense_Mutation p.E425D 0.43 tolerated(0.26) benign(0.008) TCGA-DD-A1EK-01 14 59112758 59112758 G T DACT1 Nonsense_Mutation p.E473* 0.25 TCGA-DD-A1EK-01 14 70925176 70925176 T G ADAM21 Missense_Mutation p.I320M 0.46 tolerated(0.1) benign(0.216) TCGA-DD-A1EK-01 15 75798215 75798215 G C PTPN9 Missense_Mutation p.H257D 0.39 tolerated(0.16) benign(0.343) TCGA-DD-A1EK-01 16 2814972 2814972 T C SRRM2 Silent p.D1481D 0.30 TCGA-DD-A1EK-01 16 29918172 29918172 A G KCTD13 3'UTR 0.06 TCGA-DD-A1EK-01 17 38933922 38933922 C A KRT27 Missense_Mutation p.Q345H 0.51 deleterious(0.02) benign(0.084) TCGA-DD-A1EK-01 17 80332626 80332626 C A UTS2R Silent p.T142T 0.41 TCGA-DD-A1EK-01 19 12243520 12243520 C T ZNF20 Missense_Mutation p.R494Q 0.34 tolerated(0.63) benign(0.043) TCGA-DD-A1EK-01 19 42753847 42753847 A C ERF Silent p.G139G 0.47 TCGA-DD-A1EK-01 19 49703678 49703678 G A TRPM4 Missense_Mutation p.V923M 0.46 deleterious(0) probably_damaging(1) TCGA-DD-A1EK-01 1 108735196 108735196 C A SLC25A24 Intron 0.50 TCGA-DD-A1EK-01 1 110740935 110740935 C T SLC6A17 Missense_Mutation p.P685S 0.41 tolerated(0.14) benign(0.208) TCGA-DD-A1EK-01 1 152083976 152083976 C A TCHH Nonsense_Mutation p.E573* 0.25 TCGA-DD-A1EK-01 1 154987976 154987976 G A ZBTB7B Silent p.E314E 0.23 TCGA-DD-A1EK-01 1 169696929 169696929 A G SELE Silent p.L473L 0.30 TCGA-DD-A1EK-01 1 178820448 178820448 T C ANGPTL1 Missense_Mutation p.N431S 0.52 deleterious(0.02) probably_damaging(0.986) TCGA-DD-A1EK-01 1 201328352 201328352 C T TNNT2 Missense_Mutation p.G285R 0.27 deleterious(0.04) probably_damaging(0.958) TCGA-DD-A1EK-01 1 206772954 206772954 G A EIF2D Silent p.F355F 0.24 TCGA-DD-A1EK-01 20 55027468 55027468 G A CASS4 Silent p.S412S 0.04 TCGA-DD-A1EK-01 20 62373481 62373481 A G SLC2A4RG Splice_Site p.X194_splice 0.30 TCGA-DD-A1EK-01 21 41719859 41719859 G T DSCAM Silent p.A316A 0.37 TCGA-DD-A1EK-01 21 45876637 45876638 - C LRRC3 Frame_Shift_Ins p.R38Pfs*4 0.29 TCGA-DD-A1EK-01 22 30218403 30218403 G T ASCC2 Missense_Mutation p.F154L 0.40 deleterious(0) benign(0.371) TCGA-DD-A1EK-01 22 30793042 30793042 G T SEC14L2 5'UTR 0.41 TCGA-DD-A1EK-01 22 36721141 36721141 T A MYH9 Intron 0.45 TCGA-DD-A1EK-01 2 11593707 11593707 C G E2F6 Splice_Site p.X127_splice 0.34 TCGA-DD-A1EK-01 2 158390474 158390474 T C ACVR1C Missense_Mutation p.K480E 0.39 deleterious(0) probably_damaging(0.996) TCGA-DD-A1EK-01 2 201478589 201478589 T G AOX1 Missense_Mutation p.L504W 0.36 deleterious(0.01) possibly_damaging(0.496) TCGA-DD-A1EK-01 2 204304792 204304792 G A RAPH1 Missense_Mutation p.L1041F 0.34 unknown(0) TCGA-DD-A1EK-01 2 21231070 21231070 G T APOB Missense_Mutation p.F2890L 0.37 benign(0.034) TCGA-DD-A1EK-01 2 241712532 241712532 G C KIF1A Missense_Mutation p.D393E 0.37 tolerated(0.29) benign(0.011) TCGA-DD-A1EK-01 2 32602706 32602706 G T BIRC6 Missense_Mutation p.V126F 0.24 probably_damaging(0.994) TCGA-DD-A1EK-01 2 5832837 5832837 C A SOX11 5'UTR 0.43 TCGA-DD-A1EK-01 2 69757151 69757151 T A AAK1 Missense_Mutation p.H287L 0.37 deleterious(0.03) unknown(0) TCGA-DD-A1EK-01 2 70742002 70742002 G C TGFA Missense_Mutation p.S28C 0.28 tolerated(0.12) benign(0.299) TCGA-DD-A1EK-01 2 84931193 84931193 C T DNAH6 Silent p.V2744V 0.46 TCGA-DD-A1EK-01 3 130286894 130286894 G T COL6A6 Missense_Mutation p.C616F 0.41 deleterious(0) probably_damaging(0.959) TCGA-DD-A1EK-01 3 183014626 183014626 G A MCF2L2 Intron 0.19 TCGA-DD-A1EK-01 3 184910004 184910004 G A EHHADH 3'UTR 0.05 TCGA-DD-A1EK-01 3 184910061 184910061 G A EHHADH Silent p.L709L 0.07 TCGA-DD-A1EK-01 3 184910094 184910094 G C EHHADH Missense_Mutation p.L698V 0.07 deleterious(0) probably_damaging(1) TCGA-DD-A1EK-01 3 184910328 184910328 G T EHHADH Missense_Mutation p.L620I 0.06 tolerated(0.14) benign(0.231) TCGA-DD-A1EK-01 3 184910329 184910329 G A EHHADH Silent p.I619I 0.05 TCGA-DD-A1EK-01 3 184910445 184910445 G T EHHADH Missense_Mutation p.Q581K 0.04 tolerated(0.67) benign(0.002) TCGA-DD-A1EK-01 3 184910834 184910834 G A EHHADH Missense_Mutation p.S451F 0.07 deleterious(0) probably_damaging(0.988) TCGA-DD-A1EK-01 3 184910910 184910910 G A EHHADH Missense_Mutation p.H426Y 0.09 deleterious(0.01) possibly_damaging(0.516) TCGA-DD-A1EK-01 3 184910913 184910913 G A EHHADH Missense_Mutation p.P425S 0.09 deleterious(0) probably_damaging(0.997) TCGA-DD-A1EK-01 3 184911086 184911086 G A EHHADH Missense_Mutation p.S367L 0.06 tolerated(0.76) benign(0.001) TCGA-DD-A1EK-01 3 49739578 49739578 G A RNF123 Splice_Site p.X519_splice 0.37 TCGA-DD-A1EK-01 3 64579956 64579956 C T ADAMTS9 Nonsense_Mutation p.W1445* 0.40 TCGA-DD-A1EK-01 4 185709825 185709825 A T ACSL1 Missense_Mutation p.Y86N 0.43 deleterious(0.03) benign(0.26) TCGA-DD-A1EK-01 4 41015987 41015987 T C APBB2 Missense_Mutation p.I150V 0.41 tolerated(0.52) benign(0.028) TCGA-DD-A1EK-01 4 5527032 5527032 C T C4orf6 5'UTR 0.48 TCGA-DD-A1EK-01 4 8869814 8869814 G T HMX1 Missense_Mutation p.L218M 0.17 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EK-01 4 994398 994398 A T IDUA Splice_Site p.X100_splice 0.41 TCGA-DD-A1EK-01 5 115249063 115249063 G C AP3S1 Missense_Mutation p.G153A 0.24 tolerated(0.11) benign(0.025) TCGA-DD-A1EK-01 5 122725672 122725672 C T CEP120 Missense_Mutation p.E401K 0.36 tolerated(0.16) benign(0.119) TCGA-DD-A1EK-01 5 139781433 139781433 G A ANKHD1 5'UTR 0.43 TCGA-DD-A1EK-01 5 140222268 140222268 G A PCDHA8 Silent p.A454A 0.41 TCGA-DD-A1EK-01 5 170736448 170736448 C A TLX3 Missense_Mutation p.P27T 0.33 tolerated(0.15) benign(0.011) TCGA-DD-A1EK-01 5 176305056 176305056 G A UNC5A Silent p.A599A 0.55 TCGA-DD-A1EK-01 5 36152875 36152875 A G SKP2 Missense_Mutation p.K4R 0.08 tolerated(0.32) benign(0.015) TCGA-DD-A1EK-01 5 40981550 40981550 A T C7 Missense_Mutation p.S803C 0.46 deleterious(0.03) possibly_damaging(0.717) TCGA-DD-A1EK-01 6 30709635 30709635 C T FLOT1 Missense_Mutation p.R18Q 0.46 tolerated(0.29) benign(0.066) TCGA-DD-A1EK-01 6 42585071 42585071 A G UBR2 Missense_Mutation p.T426A 0.42 deleterious(0) benign(0.401) TCGA-DD-A1EK-01 6 55198738 55198738 A G GFRAL Silent p.K104K 0.55 TCGA-DD-A1EK-01 7 12729274 12729274 G A ARL4A 3'UTR 0.32 TCGA-DD-A1EK-01 7 129847775 129847775 T G SSMEM1 Missense_Mutation p.W9G 0.38 deleterious(0.01) possibly_damaging(0.504) TCGA-DD-A1EK-01 7 140710231 140710231 A G MRPS33 Missense_Mutation p.L68P 0.40 deleterious(0.01) probably_damaging(0.914) TCGA-DD-A1EK-01 7 20706379 20706379 T A ABCB5 Intron 0.25 TCGA-DD-A1EK-01 7 27204710 27204710 C T HOXA9 Missense_Mutation p.G123S 0.09 tolerated(0.08) benign(0.381) TCGA-DD-A1EK-01 7 33054407 33054407 C A NT5C3A Missense_Mutation p.D316Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EK-01 7 55273125 55273125 A T EGFR Missense_Mutation p.T1150S 0.36 tolerated(0.2) benign(0.001) TCGA-DD-A1EK-01 7 82580517 82580517 T G PCLO Silent p.S3129S 0.38 TCGA-DD-A1EK-01 8 120807828 120807828 C T TAF2 Missense_Mutation p.G379R 0.43 deleterious(0) probably_damaging(0.997) TCGA-DD-A1EK-01 8 74600947 74600947 T C STAU2 Silent p.E72E 0.33 TCGA-DD-A1EK-01 8 88885313 88885313 A G DCAF4L2 Missense_Mutation p.L296P 0.26 deleterious(0) probably_damaging(0.997) TCGA-DD-A1EK-01 9 135782757 135782757 C A TSC1 Nonsense_Mutation p.E422* 0.65 TCGA-DD-A1EK-01 9 34725816 34725816 A T FAM205A Missense_Mutation p.L474H 0.18 tolerated(0.18) probably_damaging(0.923) TCGA-DD-A1EK-01 9 34834878 34834878 A T FAM205B RNA 0.22 TCGA-DD-A1EK-01 9 39099959 39099959 C A CNTNAP3 Missense_Mutation p.V982F 0.44 tolerated(0.89) benign(0.001) TCGA-DD-A1EK-01 X 100808329 100808329 C A ARMCX1 Missense_Mutation p.A139E 0.48 deleterious_low_confidence(0) benign(0.074) TCGA-DD-A1EK-01 X 152857988 152857988 G T FAM58A Silent p.V209V 0.50 TCGA-DD-A1EL-01 10 25883311 25883311 G T GPR158 Missense_Mutation p.L661F 0.21 deleterious(0) probably_damaging(0.993) TCGA-DD-A1EL-01 10 52005051 52005051 C A ASAH2 Missense_Mutation p.Q97H 0.53 deleterious_low_confidence(0.01) benign(0.438) TCGA-DD-A1EL-01 11 103909776 103909776 G T DDI1 3'UTR 0.10 TCGA-DD-A1EL-01 11 17741511 17741511 A G MYOD1 Missense_Mutation p.E61G 0.50 tolerated(0.11) possibly_damaging(0.533) TCGA-DD-A1EL-01 11 46679130 46679130 G A ATG13 Missense_Mutation p.R218H 0.40 tolerated(0.11) benign(0.001) TCGA-DD-A1EL-01 11 55563794 55563794 G T OR5D14 Missense_Mutation p.G255W 0.42 deleterious(0) possibly_damaging(0.867) TCGA-DD-A1EL-01 11 55563795 55563795 G T OR5D14 Missense_Mutation p.G255V 0.41 deleterious(0.01) possibly_damaging(0.798) TCGA-DD-A1EL-01 11 64082291 64082291 G T ESRRA Missense_Mutation p.G217V 0.52 tolerated(1) benign(0) TCGA-DD-A1EL-01 11 65488115 65488115 C G RNASEH2C Missense_Mutation p.D39H 0.47 deleterious(0.01) benign(0.396) TCGA-DD-A1EL-01 11 6640088 6640088 T C TPP1 Missense_Mutation p.T50A 0.10 deleterious(0.01) probably_damaging(0.967) TCGA-DD-A1EL-01 11 6643329 6643329 C A DCHS1 Missense_Mutation p.C3193F 0.37 tolerated(0.75) benign(0.214) TCGA-DD-A1EL-01 11 66625840 66625840 G A LRFN4 Missense_Mutation p.A209T 0.10 deleterious(0) benign(0.228) TCGA-DD-A1EL-01 11 76508374 76508374 A G TSKU 3'UTR 0.41 TCGA-DD-A1EL-01 12 100041853 100041853 G T FAM71C 5'UTR 0.55 TCGA-DD-A1EL-01 12 111180527 111180527 C T PPP1CC 5'UTR 0.17 TCGA-DD-A1EL-01 12 124305198 124305198 G T DNAH10 Missense_Mutation p.A1240S 0.50 possibly_damaging(0.5) TCGA-DD-A1EL-01 12 130649377 130649377 A G FZD10 3'UTR 0.09 TCGA-DD-A1EL-01 12 13906561 13906561 T C GRIN2B Missense_Mutation p.K234E 0.08 deleterious(0.04) probably_damaging(0.925) TCGA-DD-A1EL-01 12 25254117 25254117 C A LRMP Missense_Mutation p.S249R 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-DD-A1EL-01 12 4609389 4609389 C A C12orf4 Missense_Mutation p.G452V 0.35 deleterious(0) possibly_damaging(0.836) TCGA-DD-A1EL-01 12 53446269 53446269 A T TENC1 Missense_Mutation p.E82V 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-DD-A1EL-01 12 81746949 81746949 G T PPFIA2 Missense_Mutation p.T648K 0.46 deleterious(0) probably_damaging(0.991) TCGA-DD-A1EL-01 13 37679663 37679663 G T CSNK1A1L 5'UTR 0.33 TCGA-DD-A1EL-01 13 58240890 58240890 G A PCDH17 Missense_Mutation p.G907D 0.38 deleterious(0) probably_damaging(0.946) TCGA-DD-A1EL-01 15 101827889 101827889 C A SNRPA1 Missense_Mutation p.A110S 0.68 tolerated(0.4) benign(0.001) TCGA-DD-A1EL-01 15 51791589 51791589 C G DMXL2 Missense_Mutation p.V1278L 0.59 tolerated(0.63) benign(0.012) TCGA-DD-A1EL-01 15 74277722 74277722 C A STOML1 Missense_Mutation p.A243S 0.29 deleterious(0.02) possibly_damaging(0.493) TCGA-DD-A1EL-01 15 99759189 99759189 C A TTC23 Silent p.V123V 0.58 TCGA-DD-A1EL-01 16 31089632 31089632 T C ZNF646 Silent p.L663L 0.12 TCGA-DD-A1EL-01 16 49671299 49671299 G T ZNF423 Missense_Mutation p.H588Q 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-DD-A1EL-01 17 27210165 27210165 C T FLOT2 Missense_Mutation p.V103I 0.45 tolerated(1) benign(0.007) TCGA-DD-A1EL-01 17 28935566 28935566 T A SMURF2P1 RNA 0.40 TCGA-DD-A1EL-01 17 35656427 35656427 G C ACACA Intron 0.39 TCGA-DD-A1EL-01 17 3627867 3627867 A G GSG2 Missense_Mutation p.D213G 0.12 tolerated_low_confidence(0.21) benign(0.003) TCGA-DD-A1EL-01 17 36891702 36891702 G A PCGF2 Missense_Mutation p.P270L 0.48 deleterious(0) probably_damaging(0.994) TCGA-DD-A1EL-01 17 39150290 39150290 G T KRTAP3-3 Nonsense_Mutation p.C20* 0.37 TCGA-DD-A1EL-01 17 40652840 40652840 G T ATP6V0A1 Missense_Mutation p.A606S 0.39 tolerated(0.08) possibly_damaging(0.659) TCGA-DD-A1EL-01 17 41143400 41143400 T A RUNDC1 Silent p.P503P 0.35 TCGA-DD-A1EL-01 17 42756228 42756228 C G CCDC43 Missense_Mutation p.R224P 0.40 deleterious(0) unknown(0) TCGA-DD-A1EL-01 17 45925714 45925714 G T SP6 Missense_Mutation p.P28T 0.39 deleterious_low_confidence(0.01) probably_damaging(0.959) TCGA-DD-A1EL-01 17 61972411 61972411 G T CSH1 Missense_Mutation p.R209S 0.47 deleterious(0) probably_damaging(0.955) TCGA-DD-A1EL-01 17 7578449 7578449 C A TP53 Missense_Mutation p.A161S 0.69 deleterious(0) probably_damaging(1) TCGA-DD-A1EL-01 17 78327755 78327755 C T RNF213 Intron 0.10 TCGA-DD-A1EL-01 17 79864760 79864760 C A PCYT2 Silent p.R202R 0.44 TCGA-DD-A1EL-01 17 79899539 79899539 C T MYADML2 Missense_Mutation p.V27M 0.45 tolerated(0.16) benign(0.003) TCGA-DD-A1EL-01 18 44625671 44625671 C A KATNAL2 Silent p.P351P 0.11 TCGA-DD-A1EL-01 19 10602767 10602767 C A KEAP1 Missense_Mutation p.V271L 0.74 deleterious(0) probably_damaging(0.927) TCGA-DD-A1EL-01 19 19756160 19756160 C T ATP13A1 3'UTR 0.43 TCGA-DD-A1EL-01 19 35556780 35556780 C T HPN Silent p.S353S 0.48 TCGA-DD-A1EL-01 19 36033250 36033250 C A GAPDHS Missense_Mutation p.A160D 0.48 tolerated_low_confidence(0.73) benign(0.022) TCGA-DD-A1EL-01 19 36340537 36340537 T A NPHS1 Silent p.S209S 0.30 TCGA-DD-A1EL-01 19 39262670 39262670 C G LGALS7 Missense_Mutation p.R32S 0.33 tolerated(0.05) possibly_damaging(0.877) TCGA-DD-A1EL-01 19 39281329 39281329 G C LGALS7B Missense_Mutation p.R32S 0.10 tolerated(0.05) possibly_damaging(0.877) TCGA-DD-A1EL-01 19 4538450 4538450 C A LRG1 Silent p.G182G 0.71 TCGA-DD-A1EL-01 19 49536324 49536324 G A CGB2 Missense_Mutation p.R113H 0.34 deleterious(0.01) probably_damaging(0.952) TCGA-DD-A1EL-01 19 51645632 51645632 G A SIGLEC7 Silent p.L2L 0.46 TCGA-DD-A1EL-01 19 51984902 51984902 T G CEACAM18 Missense_Mutation p.I280S 0.33 deleterious(0.01) possibly_damaging(0.795) TCGA-DD-A1EL-01 19 54972800 54972800 G T LENG8 3'UTR 0.33 TCGA-DD-A1EL-01 19 54972801 54972801 A T LENG8 3'UTR 0.38 TCGA-DD-A1EL-01 19 8186181 8186181 C A FBN3 Missense_Mutation p.G1058C 0.57 deleterious(0) probably_damaging(1) TCGA-DD-A1EL-01 1 113658968 113658968 G T LRIG2 Nonsense_Mutation p.E864* 0.41 TCGA-DD-A1EL-01 1 114137184 114137184 T C MAGI3 Splice_Site p.X340_splice 0.05 TCGA-DD-A1EL-01 1 118170271 118170271 G T FAM46C 3'UTR 0.30 TCGA-DD-A1EL-01 1 1274679 1274679 G T DVL1 Intron 0.35 TCGA-DD-A1EL-01 1 152785465 152785465 T C LCE1B 3'UTR 0.28 TCGA-DD-A1EL-01 1 153913916 153913916 C G DENND4B Silent p.A352A 0.54 TCGA-DD-A1EL-01 1 160305090 160305090 C A COPA Missense_Mutation p.R84L 0.29 deleterious(0) possibly_damaging(0.569) TCGA-DD-A1EL-01 1 17081595 17081595 G A MST1L RNA 0.21 TCGA-DD-A1EL-01 1 183938536 183938536 G T COLGALT2 Silent p.P233P 0.59 TCGA-DD-A1EL-01 1 183938539 183938539 G T COLGALT2 Silent p.V232V 0.59 TCGA-DD-A1EL-01 1 200946358 200946358 C A KIF21B Missense_Mutation p.R1436L 0.38 deleterious(0) probably_damaging(0.998) TCGA-DD-A1EL-01 1 202702803 202702803 C A KDM5B Missense_Mutation p.G1212V 0.38 tolerated(0.11) benign(0.09) TCGA-DD-A1EL-01 1 202917500 202917500 C A ADIPOR1 Missense_Mutation p.V64L 0.55 tolerated(0.68) benign(0) TCGA-DD-A1EL-01 1 228474710 228474710 G T OBSCN Missense_Mutation p.A3601S 0.79 benign(0.396) TCGA-DD-A1EL-01 1 244218434 244218434 G T ZBTB18 Missense_Mutation p.G453V 0.81 deleterious(0.02) probably_damaging(0.988) TCGA-DD-A1EL-01 1 247751752 247751752 T G OR2G2 Missense_Mutation p.F31V 0.29 deleterious(0) probably_damaging(0.999) TCGA-DD-A1EL-01 1 2520399 2520399 C G FAM213B Missense_Mutation p.P197A 0.44 tolerated(0.18) possibly_damaging(0.835) TCGA-DD-A1EL-01 1 25558651 25558651 C A SYF2 Missense_Mutation p.A26S 0.50 tolerated(0.22) possibly_damaging(0.739) TCGA-DD-A1EL-01 1 28536505 28536505 C A DNAJC8 Missense_Mutation p.G126V 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-DD-A1EL-01 1 28800595 28800595 C G PHACTR4 Missense_Mutation p.S461R 0.42 tolerated(0.12) benign(0.272) TCGA-DD-A1EL-01 1 3428670 3428670 C A MEGF6 Silent p.G292G 0.39 TCGA-DD-A1EL-01 1 43201511 43201511 G T CLDN19 Intron 0.34 TCGA-DD-A1EL-01 1 74957805 74957805 A T TNNI3K Missense_Mutation p.S837C 0.17 tolerated_low_confidence(0.06) probably_damaging(0.919) TCGA-DD-A1EL-01 1 99203828 99203828 G C SNX7 Silent p.V387V 0.39 TCGA-DD-A1EL-01 20 31672752 31672752 C T BPIFB4 Silent p.G244G 0.33 TCGA-DD-A1EL-01 20 42826208 42826208 C A OSER1 Silent p.L121L 0.36 TCGA-DD-A1EL-01 20 60578221 60578221 C A TAF4 Silent p.S827S 0.44 TCGA-DD-A1EL-01 20 61981117 61981117 C G CHRNA4 Missense_Mutation p.R549P 0.38 tolerated(0.3) benign(0.005) TCGA-DD-A1EL-01 21 43954849 43954849 C T SLC37A1 Silent p.D60D 0.08 TCGA-DD-A1EL-01 21 45959880 45959880 G T KRTAP10-1 Missense_Mutation p.R52S 0.60 deleterious(0.03) benign(0.001) TCGA-DD-A1EL-01 22 39885281 39885281 A G MGAT3 3'UTR 0.08 TCGA-DD-A1EL-01 2 105924415 105924415 C A TGFBRAP1 Missense_Mutation p.R115L 0.49 deleterious(0) probably_damaging(0.916) TCGA-DD-A1EL-01 2 109380318 109380318 G T RANBP2 Missense_Mutation p.G1108V 0.36 deleterious(0) benign(0.066) TCGA-DD-A1EL-01 2 153573934 153573934 C A PRPF40A Missense_Mutation p.R7L 0.38 tolerated_low_confidence(0.24) benign(0.25) TCGA-DD-A1EL-01 2 16734201 16734201 G A FAM49A 3'UTR 0.63 TCGA-DD-A1EL-01 2 179489356 179489356 T C TTN Missense_Mutation p.K14884R 0.10 TCGA-DD-A1EL-01 2 202251196 202251196 G A TRAK2 Silent p.L570L 0.35 TCGA-DD-A1EL-01 2 202557682 202557682 C T MPP4 Silent p.V50V 0.20 TCGA-DD-A1EL-01 2 220079777 220079777 C A ABCB6 Silent p.T394T 0.22 TCGA-DD-A1EL-01 2 230667054 230667054 G A TRIP12 Silent p.A965A 0.23 TCGA-DD-A1EL-01 2 29294437 29294437 G A C2orf71 Silent p.T897T 0.22 TCGA-DD-A1EL-01 2 68384698 68384698 C G WDR92 5'Flank 0.27 TCGA-DD-A1EL-01 2 74755115 74755115 A - AUP1 Frame_Shift_Del p.R231Afs*3 0.17 TCGA-DD-A1EL-01 2 90044403 90044403 C A IGKV2D-24 Silent p.V108V 0.22 TCGA-DD-A1EL-01 3 129279234 129279234 C T PLXND1 Missense_Mutation p.R1691Q 0.42 deleterious(0.01) possibly_damaging(0.783) TCGA-DD-A1EL-01 3 140281020 140281020 A T CLSTN2 Missense_Mutation p.L694F 0.41 deleterious(0) probably_damaging(0.997) TCGA-DD-A1EL-01 3 183824643 183824643 C A HTR3E 3'Flank 0.56 TCGA-DD-A1EL-01 3 41266110 41266110 A C CTNNB1 Missense_Mutation p.H36P 0.40 deleterious(0.04) benign(0.397) TCGA-DD-A1EL-01 3 51398052 51398052 C T DOCK3 Silent p.T1665T 0.47 TCGA-DD-A1EL-01 3 77651546 77651546 G A ROBO2 Missense_Mutation p.D1030N 0.41 deleterious(0) possibly_damaging(0.555) TCGA-DD-A1EL-01 4 264792 264792 T C ZNF732 3'UTR 0.11 TCGA-DD-A1EL-01 4 44177219 44177219 T C KCTD8 Missense_Mutation p.K337R 0.38 tolerated(0.18) benign(0.143) TCGA-DD-A1EL-01 5 11082847 11082847 G A CTNND2 Missense_Mutation p.R917W 0.39 deleterious(0) probably_damaging(1) TCGA-DD-A1EL-01 5 112238112 112238112 A G REEP5 Missense_Mutation p.F106L 0.45 tolerated(0.68) possibly_damaging(0.524) TCGA-DD-A1EL-01 5 140242214 140242214 C A AC005609.1 3'UTR 0.40 TCGA-DD-A1EL-01 5 140798829 140798829 G A PCDHGB7 Missense_Mutation p.G468D 0.23 deleterious(0) probably_damaging(0.993) TCGA-DD-A1EL-01 5 33984453 33984453 A G SLC45A2 Missense_Mutation p.I79T 0.12 deleterious(0.01) benign(0.061) TCGA-DD-A1EL-01 5 42804757 42804757 C A SEPP1 Splice_Site p.X178_splice 0.34 TCGA-DD-A1EL-01 6 116542390 116542390 G A NT5DC1 Missense_Mutation p.G235R 0.33 deleterious(0) probably_damaging(0.994) TCGA-DD-A1EL-01 6 135265028 135265028 A G ALDH8A1 Missense_Mutation p.V72A 0.10 deleterious(0.01) benign(0.021) TCGA-DD-A1EL-01 6 167708073 167708073 G A UNC93A Silent p.L52L 0.36 TCGA-DD-A1EL-01 6 17764367 17764367 C A KIF13A Missense_Mutation p.A1798S 0.41 tolerated_low_confidence(0.17) benign(0) TCGA-DD-A1EL-01 6 28134514 28134514 G T ZNF192P1 RNA 0.40 TCGA-DD-A1EL-01 6 30920977 30920977 C T DPCR1 3'UTR 0.62 TCGA-DD-A1EL-01 6 33144991 33144991 C A COL11A2 Silent p.G575G 0.24 TCGA-DD-A1EL-01 6 38747836 38747836 A T DNAH8 Nonsense_Mutation p.K495* 0.31 TCGA-DD-A1EL-01 6 53517092 53517092 G T KLHL31 Silent p.A403A 0.42 TCGA-DD-A1EL-01 6 96662250 96662250 G T FUT9 3'UTR 0.33 TCGA-DD-A1EL-01 7 123143008 123143008 C T IQUB Missense_Mutation p.R286K 0.58 tolerated(0.07) possibly_damaging(0.831) TCGA-DD-A1EL-01 7 134717660 134717660 G TA AGBL3 Frame_Shift_Ins p.V162Yfs*5 0.39 TCGA-DD-A1EL-01 7 84671523 84671523 C T SEMA3D Missense_Mutation p.G314R 0.11 deleterious(0) probably_damaging(0.997) TCGA-DD-A1EL-01 9 106894408 106894408 T G SMC2 Splice_Site p.X1036_splice 0.43 TCGA-DD-A1EL-01 9 140953173 140953173 G C CACNA1B Silent p.V1487V 0.35 TCGA-DD-A1EL-01 9 84609195 84609195 G T SPATA31D1 Missense_Mutation p.Q1270H 0.34 deleterious(0) possibly_damaging(0.77) TCGA-DD-A1EL-01 X 135757211 135757211 C G ARHGEF6 Missense_Mutation p.E664Q 0.85 deleterious(0.02) benign(0.286) TCGA-DD-A1EL-01 X 26157602 26157602 T A MAGEB18 Missense_Mutation p.V167E 0.89 deleterious(0.01) probably_damaging(0.991) TCGA-DD-A1EL-01 X 63410708 63410708 C A AMER1 Missense_Mutation p.G820V 0.93 deleterious(0) probably_damaging(1) TCGA-DD-A39V-01 10 127541724 127541724 T C BCCIP Missense_Mutation p.V294A 0.08 tolerated_low_confidence(0.25) unknown(0) TCGA-DD-A39V-01 10 22606855 22606855 A G COMMD3 Missense_Mutation p.H61R 0.35 tolerated(0.12) benign(0.003) TCGA-DD-A39V-01 11 4869815 4869815 A G OR51S1 Silent p.F208F 0.31 TCGA-DD-A39V-01 12 117658021 117658021 G T NOS1 Silent p.A1377A 0.26 TCGA-DD-A39V-01 12 117658022 117658022 G T NOS1 Missense_Mutation p.A1377D 0.26 tolerated(0.17) probably_damaging(0.958) TCGA-DD-A39V-01 12 49412616 49412616 C T PRKAG1 5'Flank 0.46 TCGA-DD-A39V-01 12 50749671 50749671 A G FAM186A Missense_Mutation p.M315T 0.43 tolerated(0.06) benign(0.351) TCGA-DD-A39V-01 12 54394044 54394044 A G HOXC9 Silent p.L24L 0.21 TCGA-DD-A39V-01 12 5541339 5541339 G A NTF3 5'UTR 0.50 TCGA-DD-A39V-01 12 81102861 81102861 G A MYF6 3'UTR 0.42 TCGA-DD-A39V-01 12 99020519 99020519 T - IKBIP Frame_Shift_Del p.Q108Rfs*9 0.19 TCGA-DD-A39V-01 13 27255234 27255234 C T WASF3 Missense_Mutation p.P254S 0.30 tolerated(0.11) possibly_damaging(0.574) TCGA-DD-A39V-01 14 64497758 64497758 C T SYNE2 Nonsense_Mutation p.Q2302* 0.33 TCGA-DD-A39V-01 15 35274530 35274530 C T ZNF770 Missense_Mutation p.C369Y 0.24 tolerated(1) benign(0.001) TCGA-DD-A39V-01 15 45413291 45413291 G C DUOXA1 Missense_Mutation p.L112V 0.34 deleterious(0.01) possibly_damaging(0.837) TCGA-DD-A39V-01 15 66604085 66604085 T A DIS3L Silent p.P194P 0.39 TCGA-DD-A39V-01 16 4625287 4625287 A G C16orf96 Missense_Mutation p.E269G 0.10 deleterious(0.03) probably_damaging(0.922) TCGA-DD-A39V-01 16 69363005 69363005 G T PDF Missense_Mutation p.H218N 0.34 deleterious(0) probably_damaging(1) TCGA-DD-A39V-01 16 745857 745857 C A FBXL16 Missense_Mutation p.A234S 0.41 tolerated(0.16) benign(0.288) TCGA-DD-A39V-01 17 1634133 1634133 T C WDR81 Missense_Mutation p.L1287P 0.37 deleterious(0.01) probably_damaging(0.93) TCGA-DD-A39V-01 17 41203109 41203109 C T BRCA1 Missense_Mutation p.C1789Y 0.33 deleterious(0) probably_damaging(0.995) TCGA-DD-A39V-01 17 42273177 42273177 A T ATXN7L3 Missense_Mutation p.D188E 0.35 tolerated(0.73) benign(0.006) TCGA-DD-A39V-01 17 5365670 5365670 C A DHX33 Missense_Mutation p.R216M 0.31 tolerated(0.09) possibly_damaging(0.876) TCGA-DD-A39V-01 17 56276412 56276412 T C EPX Missense_Mutation p.S378P 0.14 deleterious(0.03) possibly_damaging(0.854) TCGA-DD-A39V-01 17 60767531 60767531 C A MRC2 Silent p.R1253R 0.30 TCGA-DD-A39V-01 17 67210857 67210857 G A ABCA10 Nonsense_Mutation p.R332* 0.26 TCGA-DD-A39V-01 17 78222437 78222437 G A SLC26A11 Missense_Mutation p.A496T 0.31 tolerated(0.39) benign(0.005) TCGA-DD-A39V-01 18 31685081 31685081 C T NOL4 Missense_Mutation p.R153Q 0.39 deleterious(0) probably_damaging(0.996) TCGA-DD-A39V-01 18 33831219 33831219 A G MOCOS Missense_Mutation p.R713G 0.10 deleterious(0.03) benign(0.177) TCGA-DD-A39V-01 18 39661287 39661287 T G PIK3C3 3'UTR 0.20 TCGA-DD-A39V-01 19 10823446 10823446 G T QTRT1 Missense_Mutation p.A292S 0.53 deleterious(0) probably_damaging(0.997) TCGA-DD-A39V-01 19 19745726 19745726 C T GMIP Missense_Mutation p.V588I 0.28 tolerated(0.58) benign(0.074) TCGA-DD-A39V-01 19 2934207 2934207 G A ZNF77 Silent p.S306S 0.52 TCGA-DD-A39V-01 19 37130367 37130367 T C ZNF461 Missense_Mutation p.I294V 0.05 tolerated(0.16) benign(0.015) TCGA-DD-A39V-01 19 375911 375911 C A THEG Missense_Mutation p.R20S 0.23 tolerated_low_confidence(0.78) benign(0.003) TCGA-DD-A39V-01 19 42569955 42569955 G A GRIK5 5'Flank 0.24 TCGA-DD-A39V-01 19 52375810 52375810 T G ZNF577 Missense_Mutation p.Y478S 0.32 deleterious(0) benign(0.118) TCGA-DD-A39V-01 1 154184832 154184832 A G C1orf43 Missense_Mutation p.L177P 0.62 tolerated(0.11) probably_damaging(0.974) TCGA-DD-A39V-01 1 154904854 154904854 C T PMVK Missense_Mutation p.G45S 0.25 deleterious(0.05) benign(0.137) TCGA-DD-A39V-01 1 155717790 155717790 G A GON4L 3'Flank 0.16 TCGA-DD-A39V-01 1 158651436 158651436 G - SPTA1 Frame_Shift_Del p.H138Tfs*7 0.24 TCGA-DD-A39V-01 1 171174626 171174626 G C FMO2 Missense_Mutation p.E346Q 0.21 tolerated(0.49) possibly_damaging(0.661) TCGA-DD-A39V-01 1 202704644 202704644 C T KDM5B Silent p.L1112L 0.18 TCGA-DD-A39V-01 1 203037705 203037705 C T PPFIA4 Silent p.F585F 0.57 TCGA-DD-A39V-01 1 225510419 225510419 T C DNAH14 Missense_Mutation p.I2384T 0.19 deleterious(0) possibly_damaging(0.826) TCGA-DD-A39V-01 1 27105581 27105582 - A ARID1A Frame_Shift_Ins p.E1733Gfs*3 0.34 TCGA-DD-A39V-01 1 41236517 41236517 G C NFYC 3'UTR 0.38 TCGA-DD-A39V-01 1 55340777 55340777 G A DHCR24 Nonsense_Mutation p.R201* 0.41 TCGA-DD-A39V-01 20 30556166 30556166 C T XKR7 Missense_Mutation p.A63V 0.17 deleterious(0.03) possibly_damaging(0.849) TCGA-DD-A39V-01 20 61870579 61870579 G A BIRC7 Missense_Mutation p.E215K 0.42 tolerated(0.1) benign(0.256) TCGA-DD-A39V-01 22 29438502 29438502 G C ZNRF3 Missense_Mutation p.R149P 0.18 deleterious(0) probably_damaging(0.999) TCGA-DD-A39V-01 22 50906873 50906873 C A SBF1 Missense_Mutation p.G25C 0.29 deleterious(0) probably_damaging(1) TCGA-DD-A39V-01 2 113067682 113067682 G A ZC3H6 Missense_Mutation p.G186E 0.42 tolerated(0.07) probably_damaging(0.921) TCGA-DD-A39V-01 2 125521613 125521613 T A CNTNAP5 Missense_Mutation p.F807I 0.05 deleterious(0.01) benign(0.1) TCGA-DD-A39V-01 2 173686605 173686605 G A RAPGEF4 Intron 0.13 TCGA-DD-A39V-01 2 178098799 178098799 T G NFE2L2 Missense_Mutation p.E82D 0.42 deleterious(0) probably_damaging(0.999) TCGA-DD-A39V-01 2 191065623 191065623 T C C2orf88 3'UTR 0.32 TCGA-DD-A39V-01 2 220095010 220095010 C G ANKZF1 Missense_Mutation p.P11A 0.26 deleterious(0.04) benign(0.011) TCGA-DD-A39V-01 2 223084872 223084872 C T PAX3 Missense_Mutation p.G387D 0.35 deleterious_low_confidence(0) possibly_damaging(0.853) TCGA-DD-A39V-01 2 234749510 234749510 A C HJURP Missense_Mutation p.L639W 0.27 deleterious(0.05) benign(0.329) TCGA-DD-A39V-01 2 39535117 39535117 T C MAP4K3 Silent p.S362S 0.20 TCGA-DD-A39V-01 2 85617517 85617517 A C ELMOD3 Missense_Mutation p.T358P 0.07 deleterious_low_confidence(0.01) benign(0.001) TCGA-DD-A39V-01 3 128712024 128712024 T C KIAA1257 Missense_Mutation p.R42G 0.36 tolerated(0.5) benign(0.006) TCGA-DD-A39V-01 3 133185754 133185754 C A BFSP2 Nonsense_Mutation p.S325* 0.11 TCGA-DD-A39V-01 3 183822009 183822009 T A HTR3E Missense_Mutation p.C107S 0.20 deleterious(0) probably_damaging(0.996) TCGA-DD-A39V-01 3 186256648 186256648 C A CRYGS Missense_Mutation p.R125L 0.40 deleterious(0.05) possibly_damaging(0.506) TCGA-DD-A39V-01 3 41266100 41266100 T C CTNNB1 Missense_Mutation p.S33P 0.31 deleterious(0.01) benign(0.423) TCGA-DD-A39V-01 4 147824847 147824847 A T TTC29 Silent p.A145A 0.48 TCGA-DD-A39V-01 4 159782775 159782775 C G FNIP2 Missense_Mutation p.L438V 0.29 tolerated(0.06) possibly_damaging(0.858) TCGA-DD-A39V-01 4 16014922 16014922 G T PROM1 Missense_Mutation p.R373S 0.33 tolerated(0.25) benign(0) TCGA-DD-A39V-01 4 1808893 1808893 G A FGFR3 Silent p.Q777Q 0.34 TCGA-DD-A39V-01 4 37962092 37962092 G T PTTG2 Nonsense_Mutation p.E13* 0.35 TCGA-DD-A39V-01 4 967112 967112 C A DGKQ Silent p.P53P 0.42 TCGA-DD-A39V-01 5 128958013 128958013 C G ADAMTS19 Missense_Mutation p.P575R 0.24 tolerated(0.06) benign(0.048) TCGA-DD-A39V-01 5 140209065 140209065 C T PCDHA6 Silent p.F463F 0.09 TCGA-DD-A39V-01 5 156479625 156479625 G A HAVCR1 Silent p.T140T 0.08 TCGA-DD-A39V-01 5 16794852 16794852 G A MYO10 Missense_Mutation p.R124C 0.48 tolerated(0.14) benign(0.001) TCGA-DD-A39V-01 5 176011757 176011757 C T CDHR2 Silent p.H825H 0.24 TCGA-DD-A39V-01 5 19838935 19838944 CCCCTTTTGG - CDH18 Frame_Shift_Del p.P51Hfs*10 0.38 TCGA-DD-A39V-01 5 95733104 95733104 A - PCSK1 Frame_Shift_Del p.F553Sfs*12 0.19 TCGA-DD-A39V-01 6 132649562 132649562 C A MOXD1 Missense_Mutation p.G279C 0.04 deleterious(0) probably_damaging(0.999) TCGA-DD-A39V-01 6 155498016 155498016 A T TIAM2 Missense_Mutation p.I810F 0.53 tolerated(0.23) benign(0.002) TCGA-DD-A39V-01 6 159262851 159262851 A G OSTCP1 RNA 0.37 TCGA-DD-A39V-01 6 35471393 35471393 G A TULP1 Silent p.T422T 0.23 TCGA-DD-A39V-01 6 56566691 56566691 G A DST Missense_Mutation p.R106C 0.26 possibly_damaging(0.854) TCGA-DD-A39V-01 6 69703824 69703824 A G BAI3 Silent p.A633A 0.29 TCGA-DD-A39V-01 6 80196750 80196750 C A LCA5 Missense_Mutation p.D689Y 0.39 deleterious(0) probably_damaging(0.98) TCGA-DD-A39V-01 7 3678680 3678680 G A SDK1 Missense_Mutation p.R168H 0.24 tolerated(0.09) benign(0.305) TCGA-DD-A39V-01 7 43484273 43484273 A G HECW1 Missense_Mutation p.E501G 0.07 tolerated_low_confidence(0.14) benign(0.002) TCGA-DD-A39V-01 7 84628838 84628838 T G SEMA3D Missense_Mutation p.K751T 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-DD-A39V-01 8 145773562 145773562 G A ARHGAP39 Missense_Mutation p.S303F 0.18 deleterious(0) probably_damaging(0.983) TCGA-DD-A39V-01 8 53085080 53085080 C T ST18 Missense_Mutation p.R114K 0.12 tolerated(0.41) benign(0.001) TCGA-DD-A39V-01 8 87587928 87587928 C G CNGB3 3'UTR 0.14 TCGA-DD-A39V-01 9 131038585 131038585 C T SWI5 Missense_Mutation p.P54L 0.35 tolerated_low_confidence(0.24) benign(0) TCGA-DD-A39V-01 9 20926358 20926358 T A FOCAD Nonsense_Mutation p.L1007* 0.32 TCGA-DD-A39V-01 9 6592200 6592200 T C GLDC Silent p.T475T 0.42 TCGA-DD-A39V-01 9 74970914 74970914 T C ZFAND5 Silent p.R199R 0.26 TCGA-DD-A39W-01 10 71008284 71008284 C T HKDC1 Missense_Mutation p.T457I 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-DD-A39W-01 11 10602112 10602112 G A MRVI1 Silent p.T795T 0.08 TCGA-DD-A39W-01 11 117150670 117150670 G A RNF214 Missense_Mutation p.E336K 0.35 tolerated(0.22) possibly_damaging(0.614) TCGA-DD-A39W-01 11 17428453 17428453 C A ABCC8 Missense_Mutation p.R1048S 0.16 tolerated(0.76) benign(0.007) TCGA-DD-A39W-01 11 49229931 49229931 C G FOLH1 Missense_Mutation p.A11P 0.45 deleterious_low_confidence(0.05) benign(0.177) TCGA-DD-A39W-01 11 6648374 6648374 G A DCHS1 Missense_Mutation p.R1966C 0.23 tolerated(0.11) possibly_damaging(0.731) TCGA-DD-A39W-01 12 121431424 121431424 T A HNF1A Missense_Mutation p.S210T 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-DD-A39W-01 12 50746361 50746361 T G FAM186A Missense_Mutation p.E1418D 0.38 tolerated(0.51) benign(0.001) TCGA-DD-A39W-01 12 50746362 50746362 T G FAM186A Missense_Mutation p.E1418A 0.37 tolerated(1) benign(0) TCGA-DD-A39W-01 12 50746424 50746424 C G FAM186A Missense_Mutation p.M1397I 0.16 tolerated(1) benign(0) TCGA-DD-A39W-01 13 40175212 40175212 G A LHFP Missense_Mutation p.R48W 0.18 deleterious(0) probably_damaging(0.998) TCGA-DD-A39W-01 15 52402020 52402020 A G BCL2L10 3'UTR 0.12 TCGA-DD-A39W-01 16 30106026 30106026 A G YPEL3 Intron 0.07 TCGA-DD-A39W-01 16 3085397 3085397 C T CCDC64B Missense_Mutation p.R34Q 0.43 tolerated(0.24) probably_damaging(0.997) TCGA-DD-A39W-01 16 67660509 67660509 G A CTCF Missense_Mutation p.R470H 0.33 tolerated(0.07) benign(0.312) TCGA-DD-A39W-01 17 1248724 1248724 T C YWHAE 3'UTR 0.06 TCGA-DD-A39W-01 17 1265253 1265253 T C YWHAE Missense_Mutation p.D105G 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.688) TCGA-DD-A39W-01 17 33310396 33310396 C T LIG3 Silent p.P124P 0.15 TCGA-DD-A39W-01 17 48452910 48452910 A G EME1 Missense_Mutation p.D114G 0.45 tolerated(0.14) benign(0.381) TCGA-DD-A39W-01 17 61898837 61898837 T C FTSJ3 Missense_Mutation p.Q588R 0.16 tolerated(0.52) benign(0.001) TCGA-DD-A39W-01 17 73723530 73723530 G A ITGB4 Missense_Mutation p.A70T 0.26 tolerated(0.55) benign(0.415) TCGA-DD-A39W-01 17 80576976 80576976 G C WDR45B Nonsense_Mutation p.S216* 0.21 TCGA-DD-A39W-01 19 36637097 36637097 G C CAPNS1 Splice_Site p.X202_splice 0.11 TCGA-DD-A39W-01 19 40580307 40580307 C A ZNF780A 3'UTR 0.08 TCGA-DD-A39W-01 19 54223426 54223426 A G MIR520D RNA 0.11 TCGA-DD-A39W-01 19 56934521 56934521 T G ZNF583 Missense_Mutation p.F165C 0.38 deleterious(0.04) benign(0.004) TCGA-DD-A39W-01 1 158299817 158299817 G T CD1B Silent p.V144V 0.32 TCGA-DD-A39W-01 1 182848473 182848473 G A DHX9 Missense_Mutation p.G814S 0.19 deleterious(0.04) possibly_damaging(0.614) TCGA-DD-A39W-01 1 214542934 214542934 G T PTPN14 Missense_Mutation p.T1046K 0.05 deleterious(0) probably_damaging(0.994) TCGA-DD-A39W-01 1 27099008 27099008 C T ARID1A Nonsense_Mutation p.Q1142* 0.40 TCGA-DD-A39W-01 20 43743715 43743715 G A WFDC5 Nonsense_Mutation p.Q4* 0.18 TCGA-DD-A39W-01 21 27141414 27141414 G A GABPA Silent p.A412A 0.40 TCGA-DD-A39W-01 22 46611213 46611213 G T PPARA Missense_Mutation p.A118S 0.35 tolerated(0.25) probably_damaging(1) TCGA-DD-A39W-01 2 120012401 120012401 T - STEAP3 Frame_Shift_Del p.W398Gfs*18 0.29 TCGA-DD-A39W-01 2 31414909 31414909 G T CAPN14 Silent p.G390G 0.19 TCGA-DD-A39W-01 2 55589549 55589549 T C CCDC88A Silent p.Q174Q 0.17 TCGA-DD-A39W-01 2 95713853 95713853 G A MAL Silent p.E81E 0.36 TCGA-DD-A39W-01 3 148868468 148868468 G A HPS3 Splice_Site p.X415_splice 0.17 TCGA-DD-A39W-01 5 140228652 140228652 C T PCDHA9 Missense_Mutation p.P191L 0.17 tolerated_low_confidence(0.78) benign(0.038) TCGA-DD-A39W-01 5 140589809 140589809 G A PCDHB12 Missense_Mutation p.V444I 0.04 tolerated_low_confidence(0.19) benign(0.028) TCGA-DD-A39W-01 5 140744161 140744161 C T PCDHGA5 Silent p.G88G 0.35 TCGA-DD-A39W-01 5 141051870 141051870 T A ARAP3 Splice_Site p.X462_splice 0.05 TCGA-DD-A39W-01 5 37007558 37007558 A C NIPBL Silent p.T1407T 0.43 TCGA-DD-A39W-01 5 37007562 37007562 A G NIPBL Missense_Mutation p.T1409A 0.44 deleterious(0.02) probably_damaging(0.991) TCGA-DD-A39W-01 5 95224587 95224587 C T ELL2 Silent p.E637E 0.17 TCGA-DD-A39W-01 6 147830139 147830139 C A SAMD5 Missense_Mutation p.N25K 0.30 deleterious(0) probably_damaging(1) TCGA-DD-A39W-01 6 29080097 29080097 T G OR2J3 Missense_Mutation p.C144G 0.39 deleterious(0) probably_damaging(1) TCGA-DD-A39W-01 6 29342651 29342651 C T OR12D3 Silent p.V138V 0.44 TCGA-DD-A39W-01 7 100686943 100686943 G A MUC17 Silent p.T4082T 0.21 TCGA-DD-A39W-01 7 98792911 98792911 G T KPNA7 Missense_Mutation p.A112E 0.38 deleterious(0.03) probably_damaging(0.91) TCGA-DD-A39W-01 8 24170902 24170902 G T ADAM28 Missense_Mutation p.G129C 0.08 deleterious(0) probably_damaging(1) TCGA-DD-A39W-01 8 24170903 24170903 G T ADAM28 Missense_Mutation p.G129V 0.07 deleterious(0) probably_damaging(1) TCGA-DD-A39W-01 8 3267015 3267015 C T CSMD1 Silent p.E558E 0.48 TCGA-DD-A39W-01 9 139744952 139744958 CAGCAGA - PHPT1 Intron 0.23 TCGA-DD-A39W-01 X 20227476 20227476 T A RPS6KA3 Missense_Mutation p.E58V 0.31 deleterious(0.01) probably_damaging(0.994) TCGA-DD-A39X-01 10 88459081 88459081 C T LDB3 Intron 0.17 TCGA-DD-A39X-01 10 89550120 89550120 G A ATAD1 Missense_Mutation p.P110L 0.32 deleterious(0) probably_damaging(0.997) TCGA-DD-A39X-01 10 96447910 96447910 G A CYP2C18 Nonsense_Mutation p.W120* 0.31 TCGA-DD-A39X-01 11 1606421 1606421 C G KRTAP5-1 Missense_Mutation p.G20A 0.42 unknown(0) TCGA-DD-A39X-01 11 20066708 20066708 C G NAV2 Missense_Mutation p.L1155V 0.20 tolerated(0.99) benign(0.234) TCGA-DD-A39X-01 11 26664762 26664762 C T ANO3 Missense_Mutation p.A770V 0.31 deleterious(0) probably_damaging(0.992) TCGA-DD-A39X-01 11 59211305 59211305 G T OR5A1 Missense_Mutation p.G222C 0.17 tolerated(0.14) benign(0.141) TCGA-DD-A39X-01 12 108917104 108917104 A C SART3 3'UTR 0.33 TCGA-DD-A39X-01 12 53039093 53039093 G A KRT2 Nonsense_Mutation p.R544* 0.17 TCGA-DD-A39X-01 12 91348442 91348442 C T CCER1 Nonsense_Mutation p.W26* 0.17 TCGA-DD-A39X-01 14 21699222 21699222 A C HNRNPC Missense_Mutation p.L84R 0.22 tolerated(0.07) benign(0.356) TCGA-DD-A39X-01 14 24729674 24729674 A G TGM1 Missense_Mutation p.F247L 0.39 deleterious(0) probably_damaging(0.986) TCGA-DD-A39X-01 15 42742306 42742306 A C ZNF106 Missense_Mutation p.L699V 0.25 deleterious(0.03) probably_damaging(0.996) TCGA-DD-A39X-01 15 48056059 48056059 C T SEMA6D Missense_Mutation p.R254C 0.31 deleterious(0) probably_damaging(1) TCGA-DD-A39X-01 15 74709008 74709008 C T SEMA7A Missense_Mutation p.D237N 0.07 tolerated(1) benign(0.007) TCGA-DD-A39X-01 15 78305187 78305187 C G TBC1D2B Missense_Mutation p.G750R 0.07 deleterious(0) probably_damaging(1) TCGA-DD-A39X-01 16 16184313 16184313 A G ABCC1 Missense_Mutation p.I838V 0.33 tolerated(0.07) benign(0.052) TCGA-DD-A39X-01 16 1961778 1961778 T C HS3ST6 Missense_Mutation p.N250S 0.21 deleterious(0) probably_damaging(0.973) TCGA-DD-A39X-01 16 61687550 61687550 C T CDH8 Missense_Mutation p.E788K 0.22 deleterious(0.04) probably_damaging(0.993) TCGA-DD-A39X-01 17 11757692 11757692 G A DNAH9 Missense_Mutation p.A3294T 0.37 benign(0.087) TCGA-DD-A39X-01 17 36499312 36499312 A G GPR179 Missense_Mutation p.S121P 0.10 deleterious(0) possibly_damaging(0.864) TCGA-DD-A39X-01 17 60766239 60766239 C A MRC2 Missense_Mutation p.S1084R 0.33 deleterious(0.03) benign(0.281) TCGA-DD-A39X-01 18 3090725 3090725 C T MYOM1 Missense_Mutation p.G1314R 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-DD-A39X-01 19 1112458 1112458 G A SBNO2 Missense_Mutation p.R820C 0.33 deleterious(0) probably_damaging(0.979) TCGA-DD-A39X-01 19 31769301 31769301 C G TSHZ3 Silent p.L466L 0.19 TCGA-DD-A39X-01 19 34818735 34818735 C T KIAA0355 Silent p.F302F 0.15 TCGA-DD-A39X-01 19 39868421 39868421 C G SAMD4B Silent p.A467A 0.10 TCGA-DD-A39X-01 19 40368846 40368846 A C FCGBP Missense_Mutation p.S4168A 0.09 benign(0.299) TCGA-DD-A39X-01 19 54759311 54759311 C T LILRB5 Missense_Mutation p.V264I 0.12 tolerated(0.59) benign(0.077) TCGA-DD-A39X-01 19 57133319 57133319 G A ZNF71 Missense_Mutation p.A222T 0.15 tolerated(0.13) probably_damaging(0.998) TCGA-DD-A39X-01 1 109793709 109793709 C T CELSR2 Silent p.P336P 0.42 TCGA-DD-A39X-01 1 110607343 110607343 G T ALX3 Missense_Mutation p.R154S 0.51 deleterious(0) probably_damaging(0.994) TCGA-DD-A39X-01 1 120906259 120906259 C T RP11-439A17.4 5'Flank 0.34 TCGA-DD-A39X-01 1 149901687 149901687 C T MTMR11 Missense_Mutation p.R590H 0.15 tolerated(0.26) benign(0.08) TCGA-DD-A39X-01 1 152327807 152327807 C T FLG2 Missense_Mutation p.G819S 0.04 unknown(0) TCGA-DD-A39X-01 1 153317700 153317700 G A PGLYRP4 Missense_Mutation p.R100W 0.09 tolerated(0.05) benign(0.056) TCGA-DD-A39X-01 1 1720616 1720617 - T GNB1 Nonsense_Mutation p.Y264* 0.33 TCGA-DD-A39X-01 1 224475603 224475603 G T NVL Missense_Mutation p.F556L 0.22 deleterious(0) probably_damaging(0.947) TCGA-DD-A39X-01 1 32794750 32794750 A T HDAC1 Missense_Mutation p.I240F 0.13 deleterious(0) probably_damaging(0.912) TCGA-DD-A39X-01 1 40435379 40435379 T A MFSD2A 3'UTR 0.44 TCGA-DD-A39X-01 20 1460431 1460431 G A SIRPB2 Missense_Mutation p.T122I 0.28 deleterious(0) benign(0.074) TCGA-DD-A39X-01 20 6057869 6057869 T A FERMT1 Missense_Mutation p.E662V 0.17 deleterious(0) probably_damaging(0.982) TCGA-DD-A39X-01 20 62250655 62250655 C A GMEB2 Missense_Mutation p.K32N 0.12 tolerated(0.06) probably_damaging(0.999) TCGA-DD-A39X-01 20 62373927 62373927 G A SLC2A4RG Missense_Mutation p.V307I 0.15 tolerated(0.37) benign(0.172) TCGA-DD-A39X-01 21 38095410 38095410 C A SIM2 Silent p.G174G 0.27 TCGA-DD-A39X-01 21 47575400 47575401 - CCATAA FTCD In_Frame_Ins p.S12_E13insVM 0.18 TCGA-DD-A39X-01 22 40521858 40521858 A G TNRC6B Missense_Mutation p.S13G 0.22 tolerated_low_confidence(0.15) benign(0.013) TCGA-DD-A39X-01 2 135170467 135170467 G A MGAT5 Missense_Mutation p.E520K 0.12 deleterious(0) possibly_damaging(0.854) TCGA-DD-A39X-01 2 197634689 197634689 G A GTF3C3 Missense_Mutation p.H779Y 0.19 deleterious(0.01) probably_damaging(0.983) TCGA-DD-A39X-01 2 220333960 220333960 C T SPEG Missense_Mutation p.R1192W 0.35 probably_damaging(0.995) TCGA-DD-A39X-01 2 37455988 37455988 T C CEBPZ Silent p.K116K 0.13 TCGA-DD-A39X-01 3 23942421 23942421 G C NKIRAS1 Missense_Mutation p.P72A 0.11 tolerated(0.1) possibly_damaging(0.759) TCGA-DD-A39X-01 3 23942422 23942422 C A NKIRAS1 Silent p.L71L 0.12 TCGA-DD-A39X-01 3 44541117 44541117 C G ZNF852 Missense_Mutation p.K384N 0.19 deleterious(0.03) benign(0.153) TCGA-DD-A39X-01 4 126238284 126238284 G T FAT4 Missense_Mutation p.V240L 0.06 benign(0.124) TCGA-DD-A39X-01 4 148778702 148778702 A G ARHGAP10 Splice_Site p.X129_splice 0.43 TCGA-DD-A39X-01 4 70160274 70160274 C G UGT2B28 Nonsense_Mutation p.S446* 0.16 TCGA-DD-A39X-01 4 71691022 71691022 A G GRSF1 Missense_Mutation p.S462P 0.05 deleterious(0.02) possibly_damaging(0.725) TCGA-DD-A39X-01 4 74283258 74283259 CG - ALB Frame_Shift_Del p.R434Lfs*29 0.14 TCGA-DD-A39X-01 5 140712536 140712536 A G PCDHGA1 Missense_Mutation p.D762G 0.21 tolerated_low_confidence(0.17) benign(0.101) TCGA-DD-A39X-01 5 140750845 140750845 A G PCDHGB3 Missense_Mutation p.D295G 0.31 deleterious(0.01) possibly_damaging(0.554) TCGA-DD-A39X-01 5 54570765 54570765 T C DHX29 Missense_Mutation p.Q834R 0.19 tolerated(1) benign(0.002) TCGA-DD-A39X-01 5 93807341 93807341 C A KIAA0825 Silent p.V517V 0.07 TCGA-DD-A39X-01 6 147680286 147680286 G T STXBP5 Missense_Mutation p.R791L 0.40 tolerated(0.16) benign(0.008) TCGA-DD-A39X-01 6 24698153 24698153 A G ACOT13 Missense_Mutation p.M42V 0.39 deleterious(0.03) benign(0.017) TCGA-DD-A39X-01 6 25917214 25917214 A G SLC17A2 Missense_Mutation p.S251P 0.28 deleterious(0.02) probably_damaging(0.915) TCGA-DD-A39X-01 6 72003034 72003034 A G OGFRL1 Silent p.R91R 0.14 TCGA-DD-A39X-01 7 148823340 148823340 G A ZNF425 5'UTR 0.32 TCGA-DD-A39X-01 7 156685632 156685632 C A LMBR1 Missense_Mutation p.R19L 0.25 deleterious(0) benign(0.002) TCGA-DD-A39X-01 7 158424348 158424348 G A NCAPG2 3'UTR 0.05 TCGA-DD-A39X-01 7 16640522 16640522 T A ANKMY2 Missense_Mutation p.E397V 0.33 tolerated_low_confidence(0.21) benign(0.002) TCGA-DD-A39X-01 7 24749890 24749890 G C DFNA5 Missense_Mutation p.A272G 0.19 tolerated(0.51) benign(0) TCGA-DD-A39X-01 7 42005994 42005994 C T GLI3 Missense_Mutation p.D893N 0.27 deleterious(0.02) possibly_damaging(0.83) TCGA-DD-A39X-01 7 44150363 44150363 T A AEBP1 Missense_Mutation p.N480K 0.29 deleterious(0) probably_damaging(1) TCGA-DD-A39X-01 7 72420659 72420659 C T POM121 3'UTR 0.21 TCGA-DD-A39X-01 7 92952972 92952972 T A CCDC132 Silent p.V635V 0.21 TCGA-DD-A39X-01 8 25341513 25341513 T C CDCA2 Silent p.F384F 0.07 TCGA-DD-A39X-01 9 113169740 113169740 A G SVEP1 Missense_Mutation p.S2714P 0.05 benign(0.126) TCGA-DD-A39X-01 9 125512279 125512279 C T OR1L6 Silent p.Y51Y 0.20 TCGA-DD-A39X-01 9 130883284 130883284 C A PTGES2 3'UTR 0.37 TCGA-DD-A39X-01 9 139244074 139244074 G A GPSM1 Nonsense_Mutation p.W438* 0.33 TCGA-DD-A39X-01 9 140058393 140058393 G A GRIN1 Intron 0.24 TCGA-DD-A39X-01 9 21201807 21201807 C T IFNA7 Missense_Mutation p.E120K 0.32 tolerated(0.2) benign(0.152) TCGA-DD-A39X-01 9 27548315 27548315 A C C9orf72 Missense_Mutation p.I455M 0.24 tolerated(0.19) benign(0.032) TCGA-DD-A39X-01 9 35045380 35045380 A G C9orf131 Silent p.P918P 0.11 TCGA-DD-A39X-01 X 140270987 140270987 A - LDOC1 Frame_Shift_Del p.Y74Tfs*4 0.31 TCGA-DD-A39X-01 X 153220034 153220034 C T HCFC1 Silent p.V1272V 0.40 TCGA-DD-A39Z-01 10 135012267 135012267 G A KNDC1 Missense_Mutation p.R752H 0.30 tolerated(0.47) benign(0.003) TCGA-DD-A39Z-01 10 24834953 24834953 A T KIAA1217 Silent p.T1844T 0.37 TCGA-DD-A39Z-01 10 75871688 75871688 G A VCL Missense_Mutation p.V923M 0.25 tolerated_low_confidence(0.11) benign(0.012) TCGA-DD-A39Z-01 10 88478582 88478582 C T LDB3 Silent p.D657D 0.05 TCGA-DD-A39Z-01 11 1256342 1256342 C T MUC5B Silent p.C886C 0.48 TCGA-DD-A39Z-01 11 4142990 4142990 A T RRM1 Missense_Mutation p.N345Y 0.40 deleterious_low_confidence(0) probably_damaging(0.924) TCGA-DD-A39Z-01 11 5528949 5528949 C G UBQLN3 Missense_Mutation p.A614P 0.40 tolerated(0.13) possibly_damaging(0.698) TCGA-DD-A39Z-01 11 85346851 85346851 T C TMEM126B Intron 0.08 TCGA-DD-A39Z-01 12 128899651 128899651 A G TMEM132C Missense_Mutation p.M154V 0.12 tolerated(1) benign(0) TCGA-DD-A39Z-01 12 41318438 41318438 C G CNTN1 Silent p.P160P 0.25 TCGA-DD-A39Z-01 12 44148626 44148626 G A PUS7L Silent p.A141A 0.33 TCGA-DD-A39Z-01 12 54757190 54757190 A G GPR84 Missense_Mutation p.V149A 0.50 tolerated(0.22) benign(0.027) TCGA-DD-A39Z-01 12 70931914 70931914 A G PTPRB Intron 0.15 TCGA-DD-A39Z-01 12 80887157 80887157 C T PTPRQ Missense_Mutation p.A484V 0.30 tolerated(0.22) benign(0.373) TCGA-DD-A39Z-01 13 103397021 103397021 G A LINC00283 RNA 0.52 TCGA-DD-A39Z-01 13 42764600 42764600 C T DGKH Silent p.S658S 0.46 TCGA-DD-A39Z-01 14 21829290 21829311 TAATAATTCGGAAAGCATTCTG - SUPT16H Frame_Shift_Del p.Q619Kfs*21 0.23 TCGA-DD-A39Z-01 14 36840659 36840659 C T DPPA3P2 RNA 0.40 TCGA-DD-A39Z-01 14 54878223 54878223 T C CDKN3 Missense_Mutation p.I72T 0.61 tolerated(0.25) possibly_damaging(0.896) TCGA-DD-A39Z-01 14 55511177 55511177 G A SOCS4 3'UTR 0.12 TCGA-DD-A39Z-01 14 96798729 96798729 C A ATG2B Nonsense_Mutation p.E461* 0.37 TCGA-DD-A39Z-01 15 41799394 41799394 G C LTK Silent p.A480A 0.48 TCGA-DD-A39Z-01 15 42140732 42140732 G A SPTBN5 3'UTR 0.39 TCGA-DD-A39Z-01 15 49176517 49176517 C A SHC4 Missense_Mutation p.Q256H 0.07 deleterious(0) probably_damaging(0.999) TCGA-DD-A39Z-01 15 54825124 54825124 T A UNC13C Silent p.V1852V 0.32 TCGA-DD-A39Z-01 15 77473962 77473962 C G PEAK1 Missense_Mutation p.G103R 0.35 deleterious(0.01) benign(0.197) TCGA-DD-A39Z-01 15 78393469 78393469 C T SH2D7 Missense_Mutation p.P292S 0.64 tolerated(0.09) benign(0.106) TCGA-DD-A39Z-01 16 364598 364598 C - AXIN1 Frame_Shift_Del p.E322Sfs*92 0.50 TCGA-DD-A39Z-01 16 50367608 50367608 C A BRD7 Missense_Mutation p.K296N 0.71 tolerated(0.06) benign(0.432) TCGA-DD-A39Z-01 16 50367609 50367609 C T BRD7 Splice_Site p.X296_splice 0.70 TCGA-DD-A39Z-01 16 67697029 67697029 G C ENKD1 3'UTR 0.62 TCGA-DD-A39Z-01 16 71798318 71798318 C A AP1G1 Nonsense_Mutation p.G288* 0.77 TCGA-DD-A39Z-01 17 33495162 33495162 C G UNC45B Missense_Mutation p.L412V 0.44 tolerated(1) benign(0.023) TCGA-DD-A39Z-01 17 39296198 39296198 T A KRTAP4-6 Missense_Mutation p.H181L 0.38 deleterious(0.03) unknown(0) TCGA-DD-A39Z-01 18 2890914 2890914 G T EMILIN2 Missense_Mutation p.K263N 0.50 tolerated(0.07) possibly_damaging(0.535) TCGA-DD-A39Z-01 18 40853607 40853607 C A SYT4 Nonsense_Mutation p.G263* 0.43 TCGA-DD-A39Z-01 19 10449552 10449552 A G ICAM3 Missense_Mutation p.F50S 0.09 tolerated(0.42) benign(0) TCGA-DD-A39Z-01 19 43430131 43430131 G T PSG7 Nonsense_Mutation p.S346* 0.46 TCGA-DD-A39Z-01 19 48908506 48908506 G A GRIN2D Silent p.V327V 0.27 TCGA-DD-A39Z-01 19 50412103 50412103 C T NUP62 Missense_Mutation p.G321E 0.32 tolerated(0.28) benign(0.038) TCGA-DD-A39Z-01 19 57175497 57175497 G T ZNF835 Missense_Mutation p.T357N 0.58 deleterious(0.05) probably_damaging(0.989) TCGA-DD-A39Z-01 19 57326944 57326944 G T PEG3 Missense_Mutation p.P956T 0.38 tolerated(0.4) benign(0.065) TCGA-DD-A39Z-01 19 828354 828354 C G AZU1 Missense_Mutation p.F61L 0.24 deleterious(0.03) possibly_damaging(0.6) TCGA-DD-A39Z-01 19 9087298 9087298 G A MUC16 Missense_Mutation p.T1506I 0.44 unknown(0) TCGA-DD-A39Z-01 1 158325760 158325760 G A CD1E Missense_Mutation p.G257R 0.27 deleterious(0.02) possibly_damaging(0.82) TCGA-DD-A39Z-01 1 163042190 163042190 A G RGS4 Missense_Mutation p.K114R 0.29 deleterious(0.02) possibly_damaging(0.838) TCGA-DD-A39Z-01 1 168216136 168216136 A C SFT2D2 3'UTR 0.28 TCGA-DD-A39Z-01 1 175958553 175958553 G A RFWD2 Missense_Mutation p.H598Y 0.23 deleterious(0) probably_damaging(1) TCGA-DD-A39Z-01 1 27876275 27876275 G A AHDC1 Silent p.G784G 0.07 TCGA-DD-A39Z-01 1 35334624 35334624 G A DLGAP3 Silent p.G689G 0.41 TCGA-DD-A39Z-01 1 40705106 40705106 A G RLF Missense_Mutation p.S1578G 0.30 tolerated(0.61) benign(0.138) TCGA-DD-A39Z-01 1 54681856 54681856 G A MRPL37 Missense_Mutation p.V345M 0.04 deleterious(0) possibly_damaging(0.629) TCGA-DD-A39Z-01 1 94502755 94502755 C A ABCA4 Silent p.T1253T 0.46 TCGA-DD-A39Z-01 20 32265257 32265257 T A E2F1 Missense_Mutation p.Q272L 0.43 deleterious(0.01) possibly_damaging(0.554) TCGA-DD-A39Z-01 20 34214131 34214131 G C CPNE1 3'UTR 0.48 TCGA-DD-A39Z-01 20 36974925 36974925 G A LBP Silent p.G2G 0.45 TCGA-DD-A39Z-01 20 46275954 46275954 A G NCOA3 Silent p.G1130G 0.56 TCGA-DD-A39Z-01 21 41455834 41455834 C G DSCAM Splice_Site p.X1411_splice 0.38 TCGA-DD-A39Z-01 21 41455835 41455835 C A DSCAM Nonsense_Mutation p.G1411* 0.39 TCGA-DD-A39Z-01 21 43309200 43309200 C G C2CD2 3'UTR 0.16 TCGA-DD-A39Z-01 2 152534626 152534626 G A NEB Silent p.L1111L 0.42 TCGA-DD-A39Z-01 2 153435453 153435453 C G FMNL2 Missense_Mutation p.L253V 0.39 possibly_damaging(0.743) TCGA-DD-A39Z-01 2 170103365 170103365 C T LRP2 Missense_Mutation p.E1014K 0.34 benign(0.048) TCGA-DD-A39Z-01 2 191064868 191064868 G A C2orf88 Silent p.G94G 0.16 TCGA-DD-A39Z-01 2 210837964 210837964 G A UNC80 Missense_Mutation p.A2787T 0.40 probably_damaging(0.991) TCGA-DD-A39Z-01 2 217124210 217124210 C T MARCH4 Missense_Mutation p.G353D 0.34 deleterious(0.05) benign(0.001) TCGA-DD-A39Z-01 2 233400022 233400022 G T CHRND Nonstop_Mutation p.*518Yext*13 0.06 TCGA-DD-A39Z-01 2 37464985 37464985 G A NDUFAF7 Missense_Mutation p.G128E 0.48 deleterious(0) probably_damaging(0.998) TCGA-DD-A39Z-01 2 44436409 44436409 G A PPM1B Missense_Mutation p.D303N 0.16 tolerated(0.09) benign(0.088) TCGA-DD-A39Z-01 2 71592804 71592804 G T ZNF638 Missense_Mutation p.V655L 0.39 tolerated(0.23) benign(0.002) TCGA-DD-A39Z-01 2 73716837 73716837 A G ALMS1 Missense_Mutation p.K2583R 0.45 possibly_damaging(0.823) TCGA-DD-A39Z-01 3 135914128 135914128 C T MSL2 5'UTR 0.33 TCGA-DD-A39Z-01 3 173997373 173997373 T G NLGN1 Missense_Mutation p.F528V 0.45 deleterious(0) probably_damaging(0.979) TCGA-DD-A39Z-01 3 186938875 186938875 G A MASP1 Silent p.A619A 0.45 TCGA-DD-A39Z-01 3 47454800 47454800 C A PTPN23 3'UTR 0.40 TCGA-DD-A39Z-01 3 52023203 52023203 T C ACY1 3'Flank 0.44 TCGA-DD-A39Z-01 3 5252876 5252876 G C EDEM1 Missense_Mutation p.S552T 0.42 deleterious(0) probably_damaging(0.997) TCGA-DD-A39Z-01 4 154625449 154625449 G A TLR2 Missense_Mutation p.V464I 0.43 tolerated(0.22) benign(0.012) TCGA-DD-A39Z-01 4 40245536 40245536 G A RHOH Missense_Mutation p.R177Q 0.09 tolerated(0.45) benign(0.001) TCGA-DD-A39Z-01 5 114548112 114548112 T C PGGT1B Missense_Mutation p.H374R 0.33 tolerated_low_confidence(0.16) benign(0.008) TCGA-DD-A39Z-01 5 38337733 38337733 T C EGFLAM Splice_Site p.X69_splice 0.45 TCGA-DD-A39Z-01 5 68390024 68390024 C T SLC30A5 5'UTR 0.62 TCGA-DD-A39Z-01 6 10702604 10702604 A G PAK1IP1 Missense_Mutation p.T84A 0.22 deleterious(0) possibly_damaging(0.545) TCGA-DD-A39Z-01 6 30680046 30680046 C - MDC1 Frame_Shift_Del p.G558Dfs*10 0.18 TCGA-DD-A39Z-01 6 30707949 30707949 C A FLOT1 Missense_Mutation p.A237S 0.24 tolerated(0.06) benign(0.27) TCGA-DD-A39Z-01 6 34494040 34494040 C A PACSIN1 5'UTR 0.23 TCGA-DD-A39Z-01 6 34831811 34831811 C T UHRF1BP1 Missense_Mutation p.A1083V 0.25 tolerated(0.33) benign(0.002) TCGA-DD-A39Z-01 6 39554149 39554149 G A KIF6 Missense_Mutation p.S293L 0.03 deleterious(0.04) benign(0.052) TCGA-DD-A39Z-01 6 42185570 42185570 C A MRPS10 Silent p.A6A 0.30 TCGA-DD-A39Z-01 6 43970788 43970788 G T C6orf223 Silent p.R218R 0.34 TCGA-DD-A39Z-01 6 99374410 99374410 A C FBXL4 Missense_Mutation p.I152S 0.72 deleterious(0) benign(0.432) TCGA-DD-A39Z-01 7 143270096 143270096 A C CTAGE15 Missense_Mutation p.M396L 0.09 tolerated(0.28) benign(0.024) TCGA-DD-A39Z-01 7 17933019 17933019 G A SNX13 Missense_Mutation p.S55L 0.20 tolerated(0.2) possibly_damaging(0.595) TCGA-DD-A39Z-01 7 4091349 4091349 G A SDK1 Missense_Mutation p.G933E 0.39 deleterious(0.04) possibly_damaging(0.596) TCGA-DD-A39Z-01 7 54610394 54610394 A G VSTM2A 5'UTR 0.23 TCGA-DD-A39Z-01 7 57188564 57188564 T A ZNF479 Missense_Mutation p.K186N 0.27 deleterious(0.01) possibly_damaging(0.881) TCGA-DD-A39Z-01 8 10464506 10464506 C T RP1L1 Missense_Mutation p.E2368K 0.77 unknown(0) TCGA-DD-A39Z-01 8 12885299 12885299 C T KIAA1456 3'UTR 0.80 TCGA-DD-A39Z-01 8 141381200 141381200 G A TRAPPC9 Missense_Mutation p.A503V 0.31 deleterious(0) probably_damaging(0.919) TCGA-DD-A39Z-01 8 143603336 143603336 C T BAI1 Missense_Mutation p.T1012M 0.32 deleterious(0.02) benign(0.004) TCGA-DD-A39Z-01 8 144890960 144890960 C T SCRIB Nonsense_Mutation p.W645* 0.21 TCGA-DD-A39Z-01 8 144944289 144944289 C T EPPK1 Missense_Mutation p.A1045T 0.36 possibly_damaging(0.698) TCGA-DD-A39Z-01 8 145619449 145619449 C A CPSF1 Missense_Mutation p.V1271L 0.30 deleterious(0.03) benign(0.405) TCGA-DD-A39Z-01 8 26614202 26614202 G C ADRA1A Intron 0.68 TCGA-DD-A39Z-01 8 55542668 55542668 T A RP1 Missense_Mutation p.F2076I 0.36 deleterious(0.02) benign(0.429) TCGA-DD-A39Z-01 9 14639974 14639974 T C ZDHHC21 Missense_Mutation p.R181G 0.10 tolerated(0.09) benign(0.159) TCGA-DD-A39Z-01 9 35853674 35853674 G T TMEM8B Missense_Mutation p.G419V 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-DD-A39Z-01 9 5339796 5339796 T C RLN1 5'UTR 0.43 TCGA-DD-A39Z-01 X 123654550 123654550 G A TENM1 Silent p.L1040L 0.70 TCGA-DD-A39Z-01 X 44109537 44109537 A G EFHC2 Missense_Mutation p.F254S 0.05 deleterious(0) probably_damaging(0.991) TCGA-DD-A3A2-01 10 105142994 105142994 G C TAF5 Splice_Site p.X512_splice 0.42 TCGA-DD-A3A2-01 10 115528632 115528632 A G PLEKHS1 Missense_Mutation p.T134A 0.28 tolerated(1) benign(0.023) TCGA-DD-A3A2-01 10 127760154 127760154 C T ADAM12 Missense_Mutation p.M408I 0.48 tolerated(1) benign(0.042) TCGA-DD-A3A2-01 10 46111982 46111982 C G ZFAND4 Missense_Mutation p.E696Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-DD-A3A2-01 10 8006861 8006861 C T TAF3 Missense_Mutation p.S463L 0.36 deleterious(0) probably_damaging(0.985) TCGA-DD-A3A2-01 10 92509305 92509305 C A HTR7 Missense_Mutation p.G196W 0.36 deleterious(0) probably_damaging(1) TCGA-DD-A3A2-01 11 124135110 124135110 C A OR8G5 Missense_Mutation p.P130T 0.46 tolerated(0.1) benign(0.014) TCGA-DD-A3A2-01 11 19204231 19204231 C A CSRP3 Nonsense_Mutation p.E191* 0.05 TCGA-DD-A3A2-01 11 25100161 25100161 C A LUZP2 Missense_Mutation p.T333N 0.33 tolerated_low_confidence(0.16) benign(0.003) TCGA-DD-A3A2-01 11 32421555 32421555 G A WT1 Missense_Mutation p.T346M 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.489) TCGA-DD-A3A2-01 11 64128041 64128041 C A RPS6KA4 Missense_Mutation p.L147M 0.42 deleterious(0.02) probably_damaging(0.978) TCGA-DD-A3A2-01 11 73008715 73008715 C G P2RY6 3'UTR 0.47 TCGA-DD-A3A2-01 11 7981809 7981809 G A NLRP10 Silent p.N450N 0.30 TCGA-DD-A3A2-01 12 121426820 121426820 C T HNF1A Nonsense_Mutation p.R171* 0.39 TCGA-DD-A3A2-01 12 121431506 121431506 A G HNF1A Missense_Mutation p.N237S 0.39 deleterious(0.02) benign(0.382) TCGA-DD-A3A2-01 12 2933099 2933099 G T ITFG2 Missense_Mutation p.E410D 0.38 tolerated(0.33) benign(0.065) TCGA-DD-A3A2-01 12 49425236 49425236 C - KMT2D Frame_Shift_Del p.E4418Nfs*14 0.25 TCGA-DD-A3A2-01 12 6575451 6575451 G A VAMP1 Silent p.G23G 0.41 TCGA-DD-A3A2-01 12 77158072 77158072 A G ZDHHC17 Missense_Mutation p.D19G 0.35 tolerated_low_confidence(0.11) benign(0.032) TCGA-DD-A3A2-01 12 8205442 8205442 C G FOXJ2 Missense_Mutation p.T574S 0.39 deleterious_low_confidence(0.02) probably_damaging(0.965) TCGA-DD-A3A2-01 13 113898777 113898777 G T CUL4A Nonsense_Mutation p.E428* 0.41 TCGA-DD-A3A2-01 14 107013160 107013160 T A IGHV3-49 Silent p.G45G 0.44 TCGA-DD-A3A2-01 14 35231375 35231375 T G BAZ1A Missense_Mutation p.K1277N 0.05 tolerated_low_confidence(0.09) benign(0.029) TCGA-DD-A3A2-01 15 48634045 48634045 G A DUT Intron 0.29 TCGA-DD-A3A2-01 15 49284998 49284999 - TGGGGGTGTGTCAAATGGAAGTTG SECISBP2L In_Frame_Ins p.P916_I917insQLPFDTPP 0.24 TCGA-DD-A3A2-01 15 64701814 64701814 T C TRIP4 Missense_Mutation p.I277T 0.06 tolerated(0.12) benign(0.14) TCGA-DD-A3A2-01 15 91423938 91423938 C T FURIN Missense_Mutation p.A525V 0.33 tolerated(0.13) benign(0.009) TCGA-DD-A3A2-01 16 1251935 1251935 G A CACNA1H Silent p.V495V 0.49 TCGA-DD-A3A2-01 16 28877909 28877909 C T SH2B1 Missense_Mutation p.S165L 0.38 deleterious(0) benign(0.012) TCGA-DD-A3A2-01 16 29979380 29979380 C T TMEM219 Silent p.A130A 0.42 TCGA-DD-A3A2-01 16 30976057 30976057 G A SETD1A Missense_Mutation p.A332T 0.35 benign(0.002) TCGA-DD-A3A2-01 16 5127503 5127503 G A ALG1 Missense_Mutation p.M199I 0.38 deleterious(0) probably_damaging(0.999) TCGA-DD-A3A2-01 17 36977155 36977155 T A CWC25 Nonsense_Mutation p.K64* 0.36 TCGA-DD-A3A2-01 17 40831634 40831634 G A CCR10 Silent p.R342R 0.49 TCGA-DD-A3A2-01 17 45757446 45757446 C T KPNB1 Missense_Mutation p.A805V 0.07 deleterious(0.03) benign(0.37) TCGA-DD-A3A2-01 17 8141349 8141349 C T CTC1 Missense_Mutation p.R216K 0.28 deleterious(0.03) possibly_damaging(0.827) TCGA-DD-A3A2-01 18 19144186 19144186 G T ESCO1 Missense_Mutation p.T600N 0.24 tolerated(0.26) benign(0.001) TCGA-DD-A3A2-01 18 22807281 22807281 G T ZNF521 Missense_Mutation p.P201T 0.36 deleterious(0.01) probably_damaging(1) TCGA-DD-A3A2-01 19 17115177 17115180 GAAG AAA CPAMD8 Frame_Shift_Del p.L242Cfs*38 0.21 TCGA-DD-A3A2-01 19 41354235 41354235 G C CYP2A6 Silent p.V181V 0.38 TCGA-DD-A3A2-01 19 53208756 53208756 C G ZNF611 Missense_Mutation p.V518L 0.42 tolerated(0.13) benign(0.034) TCGA-DD-A3A2-01 1 109261510 109261510 T G FNDC7 Missense_Mutation p.I146S 0.35 deleterious(0) possibly_damaging(0.799) TCGA-DD-A3A2-01 1 157805945 157805945 G A CD5L Missense_Mutation p.A19V 0.07 tolerated(0.15) benign(0.035) TCGA-DD-A3A2-01 1 206325312 206325312 A C CTSE Silent p.A179A 0.39 TCGA-DD-A3A2-01 1 229794870 229794870 A C URB2 Missense_Mutation p.K1467N 0.07 deleterious(0) probably_damaging(0.999) TCGA-DD-A3A2-01 1 231337125 231337125 C T TRIM67 Missense_Mutation p.R466C 0.37 deleterious(0) probably_damaging(0.993) TCGA-DD-A3A2-01 1 64644486 64644486 G A ROR1 Missense_Mutation p.G921E 0.42 deleterious_low_confidence(0.02) benign(0.002) TCGA-DD-A3A2-01 1 89735097 89735097 G C GBP5 Missense_Mutation p.R48G 0.41 deleterious(0) possibly_damaging(0.537) TCGA-DD-A3A2-01 20 2582881 2582881 C T TMC2 Silent p.Y449Y 0.30 TCGA-DD-A3A2-01 20 32664559 32664559 C T RALY Missense_Mutation p.S199F 0.46 tolerated(0.13) possibly_damaging(0.661) TCGA-DD-A3A2-01 20 44531198 44531198 G C PLTP Missense_Mutation p.L330V 0.38 tolerated(0.73) benign(0.008) TCGA-DD-A3A2-01 20 61990961 61990961 G A CHRNA4 Missense_Mutation p.A56V 0.34 tolerated(0.18) possibly_damaging(0.899) TCGA-DD-A3A2-01 22 18300440 18300440 G C MICAL3 Missense_Mutation p.L1663V 0.33 benign(0.278) TCGA-DD-A3A2-01 22 33670561 33670561 T A LARGE Missense_Mutation p.H708L 0.37 deleterious(0) probably_damaging(0.999) TCGA-DD-A3A2-01 2 202965064 202965064 A T AC079354.1 Missense_Mutation p.R349S 0.06 deleterious(0) possibly_damaging(0.852) TCGA-DD-A3A2-01 2 219513586 219513586 C A ZNF142 Missense_Mutation p.D349Y 0.37 deleterious(0) possibly_damaging(0.7) TCGA-DD-A3A2-01 2 33172789 33172789 A G LTBP1 Missense_Mutation p.K133R 0.25 tolerated(0.43) benign(0) TCGA-DD-A3A2-01 2 70188883 70188883 C A ASPRV1 5'UTR 0.36 TCGA-DD-A3A2-01 2 71755439 71755439 G T DYSF Missense_Mutation p.V430L 0.43 tolerated(0.16) possibly_damaging(0.592) TCGA-DD-A3A2-01 2 84777070 84777070 T C DNAH6 Silent p.N458N 0.17 TCGA-DD-A3A2-01 3 123987858 123987858 C T KALRN Missense_Mutation p.A240V 0.07 tolerated(0.2) possibly_damaging(0.611) TCGA-DD-A3A2-01 3 37695227 37695227 G A ITGA9 Missense_Mutation p.R621H 0.37 tolerated(0.25) benign(0.009) TCGA-DD-A3A2-01 3 50332788 50332788 G A HYAL3 Silent p.P82P 0.28 TCGA-DD-A3A2-01 3 63982027 63982027 G A ATXN7 Silent p.S843S 0.05 TCGA-DD-A3A2-01 4 104640561 104640561 G A TACR3 Missense_Mutation p.A91V 0.29 deleterious(0.04) probably_damaging(0.996) TCGA-DD-A3A2-01 4 134075516 134075516 A C PCDH10 Missense_Mutation p.N896H 0.33 tolerated(0.06) possibly_damaging(0.804) TCGA-DD-A3A2-01 4 155157679 155157679 C A DCHS2 Nonsense_Mutation p.E2254* 0.36 TCGA-DD-A3A2-01 4 175896738 175896738 A C ADAM29 Missense_Mutation p.Q21P 0.38 deleterious(0.01) benign(0.015) TCGA-DD-A3A2-01 4 2835649 2835649 T G SH3BP2 3'UTR 0.50 TCGA-DD-A3A2-01 4 3190808 3190808 A G HTT Missense_Mutation p.I1786V 0.40 benign(0.05) TCGA-DD-A3A2-01 4 46390916 46390916 C T GABRA2 Intron 0.39 TCGA-DD-A3A2-01 4 6595009 6595009 G A MAN2B2 Missense_Mutation p.E264K 0.06 tolerated(0.77) benign(0.014) TCGA-DD-A3A2-01 4 83378171 83378171 T G ENOPH1 Missense_Mutation p.F209C 0.31 deleterious(0) probably_damaging(1) TCGA-DD-A3A2-01 5 140203294 140203294 G A PCDHA5 Missense_Mutation p.R645H 0.37 deleterious_low_confidence(0.04) benign(0.152) TCGA-DD-A3A2-01 5 145176020 145176020 T G PRELID2 Silent p.R165R 0.44 TCGA-DD-A3A2-01 5 148929773 148929773 C T CSNK1A1 Intron 0.34 TCGA-DD-A3A2-01 5 149927947 149927947 C A NDST1 Missense_Mutation p.N771K 0.37 tolerated(0.29) benign(0.13) TCGA-DD-A3A2-01 5 153372507 153372507 C A FAM114A2 3'UTR 0.45 TCGA-DD-A3A2-01 5 156675955 156675955 T C ITK Silent p.L577L 0.07 TCGA-DD-A3A2-01 5 180662177 180662177 G A TRIM41 3'UTR 0.43 TCGA-DD-A3A2-01 5 72347205 72347205 C AA FCHO2 Nonsense_Mutation p.Y323* 0.20 TCGA-DD-A3A2-01 5 74026206 74026206 C G GFM2 Missense_Mutation p.M535I 0.38 deleterious(0) benign(0.18) TCGA-DD-A3A2-01 5 74872759 74872759 G C POLK Splice_Site p.X232_splice 0.36 TCGA-DD-A3A2-01 6 144184760 144184762 TAC AG LTV1 3'UTR 0.29 TCGA-DD-A3A2-01 6 41655675 41655675 G A TFEB Missense_Mutation p.A214V 0.39 deleterious(0) possibly_damaging(0.592) TCGA-DD-A3A2-01 7 104747073 104747073 A G KMT2E Missense_Mutation p.T901A 0.26 tolerated_low_confidence(0.89) benign(0.001) TCGA-DD-A3A2-01 7 139798778 139798778 C T KDM7A Missense_Mutation p.E607K 0.24 tolerated(0.22) benign(0.035) TCGA-DD-A3A2-01 7 141726934 141726934 G T MGAM Silent p.A334A 0.29 TCGA-DD-A3A2-01 7 150945734 150945734 C T SMARCD3 5'UTR 0.35 TCGA-DD-A3A2-01 7 42005030 42005030 T G GLI3 Missense_Mutation p.Q1214P 0.24 tolerated_low_confidence(0.15) benign(0.002) TCGA-DD-A3A2-01 7 5036869 5036869 G A RNF216P1 RNA 0.53 TCGA-DD-A3A2-01 7 72416805 72416805 C G POM121 Intron 0.26 TCGA-DD-A3A2-01 7 73477959 73477959 G A ELN Missense_Mutation p.G643R 0.06 unknown(0) TCGA-DD-A3A2-01 9 115938874 115938876 CAC - FKBP15 In_Frame_Del p.V722del 0.33 TCGA-DD-A3A2-01 9 123785770 123785770 G A C5 Missense_Mutation p.P343L 0.04 tolerated(0.06) benign(0.006) TCGA-DD-A3A2-01 9 132400301 132400301 T G ASB6 Missense_Mutation p.N345T 0.46 tolerated(0.08) benign(0.242) TCGA-DD-A3A2-01 9 139617874 139617874 A C FAM69B Missense_Mutation p.D315A 0.19 deleterious(0) possibly_damaging(0.861) TCGA-DD-A3A2-01 9 139878137 139878137 G T LCNL1 Silent p.L33L 0.33 TCGA-DD-A3A2-01 X 109764286 109764286 T G TDGF1P3 RNA 0.37 TCGA-DD-A3A2-01 X 134482047 134482047 A C ZNF449 Intron 0.43 TCGA-DD-A3A2-01 X 148582537 148582537 C T IDS Silent p.P150P 0.42 TCGA-DD-A3A2-01 X 24744103 24744103 G T POLA1 Silent p.V435V 0.42 TCGA-DD-A3A3-01 10 108339225 108339225 C A SORCS1 Silent p.L1091L 0.33 TCGA-DD-A3A3-01 10 19780493 19780493 C T MALRD1 Missense_Mutation p.R1072W 0.08 tolerated(0.12) benign(0.011) TCGA-DD-A3A3-01 10 75567215 75567215 C T NDST2 Missense_Mutation p.R311H 0.44 deleterious(0) probably_damaging(1) TCGA-DD-A3A3-01 11 118513074 118513074 C A PHLDB1 Missense_Mutation p.P947T 0.24 deleterious(0.04) benign(0.001) TCGA-DD-A3A3-01 11 1642677 1642677 G T KRTAP5-4 Missense_Mutation p.S216Y 0.28 deleterious_low_confidence(0) unknown(0) TCGA-DD-A3A3-01 11 32635624 32635625 - T CCDC73 Frame_Shift_Ins p.T747Nfs*4 0.19 TCGA-DD-A3A3-01 11 4411479 4411479 C T TRIM21 Missense_Mutation p.C54Y 0.30 deleterious(0) probably_damaging(1) TCGA-DD-A3A3-01 11 5269688 5269688 C T HBG1 Silent p.L115L 0.31 TCGA-DD-A3A3-01 11 65828070 65828070 G T SF3B2 Missense_Mutation p.M549I 0.47 deleterious(0.02) benign(0.289) TCGA-DD-A3A3-01 12 18892064 18892064 A G CAPZA3 Missense_Mutation p.I288V 0.41 tolerated_low_confidence(0.52) benign(0.002) TCGA-DD-A3A3-01 12 70049144 70049144 C - BEST3 Frame_Shift_Del p.G517Afs*11 0.34 TCGA-DD-A3A3-01 13 113047360 113047360 T C SPACA7 Silent p.S40S 0.08 TCGA-DD-A3A3-01 13 38159033 38159033 G - POSTN Frame_Shift_Del p.Q310Sfs*22 0.26 TCGA-DD-A3A3-01 13 39338482 39338482 G C FREM2 Missense_Mutation p.A1769P 0.33 deleterious(0) benign(0.204) TCGA-DD-A3A3-01 14 20944716 20944716 T C PNP Missense_Mutation p.S276P 0.06 deleterious(0.02) possibly_damaging(0.632) TCGA-DD-A3A3-01 14 57741433 57741433 T C AP5M1 Silent p.D182D 0.35 TCGA-DD-A3A3-01 14 72054528 72054528 C T SIPA1L1 5'UTR 0.06 TCGA-DD-A3A3-01 15 24926686 24926686 C T NPAP1 3'UTR 0.35 TCGA-DD-A3A3-01 16 30018527 30018527 C T DOC2A Silent p.K207K 0.47 TCGA-DD-A3A3-01 16 72058091 72058091 G C DHODH Missense_Mutation p.R394P 0.33 deleterious(0) possibly_damaging(0.714) TCGA-DD-A3A3-01 17 29541512 29541512 A - NF1 Frame_Shift_Del p.K480Nfs*18 0.30 TCGA-DD-A3A3-01 17 3493227 3493227 C A SHPK Silent p.V306V 0.62 TCGA-DD-A3A3-01 17 3493239 3493239 G A SHPK Silent p.N302N 0.60 TCGA-DD-A3A3-01 17 40481576 40481576 T C STAT3 Missense_Mutation p.H410R 0.52 deleterious(0) probably_damaging(0.997) TCGA-DD-A3A3-01 17 42744727 42744728 - A C17orf104 Frame_Shift_Ins p.N485Kfs*2 0.28 TCGA-DD-A3A3-01 17 51901390 51901390 G T KIF2B Silent p.V332V 0.26 TCGA-DD-A3A3-01 17 56166589 56166589 C T DYNLL2 Silent p.F73F 0.21 TCGA-DD-A3A3-01 17 78867532 78867532 C T RPTOR Silent p.P756P 0.06 TCGA-DD-A3A3-01 19 14208204 14208204 A G PRKACA Missense_Mutation p.I245T 0.36 deleterious(0) benign(0.227) TCGA-DD-A3A3-01 19 15303036 15303036 G A NOTCH3 Silent p.P138P 0.47 TCGA-DD-A3A3-01 19 38855544 38855544 A T CATSPERG Missense_Mutation p.D830V 0.30 deleterious(0) possibly_damaging(0.904) TCGA-DD-A3A3-01 19 49972226 49972226 T C ALDH16A1 Missense_Mutation p.Y744H 0.07 tolerated(0.12) probably_damaging(1) TCGA-DD-A3A3-01 19 57840110 57840110 A C ZNF543 Missense_Mutation p.E427A 0.38 deleterious(0.03) probably_damaging(0.944) TCGA-DD-A3A3-01 19 58058283 58058283 G A ZNF550 3'UTR 0.54 TCGA-DD-A3A3-01 1 14108628 14108628 G A PRDM2 Silent p.L1446L 0.39 TCGA-DD-A3A3-01 1 153958796 153958796 A G RAB13 5'UTR 0.46 TCGA-DD-A3A3-01 1 155296520 155296520 C T RUSC1 Silent p.L671L 0.63 TCGA-DD-A3A3-01 1 161823113 161823113 G T ATF6 Missense_Mutation p.Q511H 0.19 deleterious(0.01) benign(0.387) TCGA-DD-A3A3-01 1 179965731 179965731 G A CEP350 Missense_Mutation p.E147K 0.71 possibly_damaging(0.611) TCGA-DD-A3A3-01 1 180003175 180003175 G A CEP350 Missense_Mutation p.A1302T 0.66 benign(0.003) TCGA-DD-A3A3-01 1 184446676 184446676 T A C1orf21 Silent p.T11T 0.52 TCGA-DD-A3A3-01 1 209936844 209936844 T A TRAF3IP3 Missense_Mutation p.L205Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-DD-A3A3-01 1 230898441 230898441 C T CAPN9 Missense_Mutation p.R149C 0.12 tolerated(0.08) probably_damaging(1) TCGA-DD-A3A3-01 1 27939217 27939217 C T FGR 3'UTR 0.62 TCGA-DD-A3A3-01 1 28818225 28818225 G T PHACTR4 Missense_Mutation p.V658L 0.42 deleterious(0) possibly_damaging(0.506) TCGA-DD-A3A3-01 1 45977016 45977016 G C PRDX1 Missense_Mutation p.F195L 0.34 deleterious(0.03) probably_damaging(0.999) TCGA-DD-A3A3-01 1 84864291 84864291 C A DNASE2B Missense_Mutation p.A15D 0.44 tolerated(0.19) benign(0.036) TCGA-DD-A3A3-01 1 89575922 89575922 C T GBP2 Missense_Mutation p.E464K 0.46 tolerated(0.56) benign(0.005) TCGA-DD-A3A3-01 1 91784735 91784735 C A HFM1 Missense_Mutation p.K904N 0.44 tolerated(0.45) benign(0.013) TCGA-DD-A3A3-01 22 17577966 17577966 G A IL17RA Silent p.T51T 0.36 TCGA-DD-A3A3-01 2 120438937 120438937 G T TMEM177 Missense_Mutation p.A170S 0.27 tolerated(0.17) benign(0.063) TCGA-DD-A3A3-01 2 160901606 160901606 C G PLA2R1 Missense_Mutation p.V58L 0.34 tolerated(0.3) benign(0.003) TCGA-DD-A3A3-01 2 210517999 210517999 C A MAP2 Silent p.G35G 0.49 TCGA-DD-A3A3-01 2 88424070 88424072 CAC - FABP1 In_Frame_Del p.V92del 0.35 TCGA-DD-A3A3-01 2 96696261 96696261 C T GPAT2 Silent p.G126G 0.22 TCGA-DD-A3A3-01 3 121200622 121200622 G A POLQ Missense_Mutation p.P2003L 0.36 tolerated(0.11) possibly_damaging(0.866) TCGA-DD-A3A3-01 3 193855598 193855598 T G HES1 Missense_Mutation p.L140R 0.57 deleterious(0) possibly_damaging(0.643) TCGA-DD-A3A3-01 3 195452957 195452957 A T MUC20 Missense_Mutation p.T495S 0.22 tolerated(0.05) unknown(0) TCGA-DD-A3A3-01 3 41266104 41266104 G A CTNNB1 Missense_Mutation p.G34E 0.38 deleterious(0.03) probably_damaging(0.993) TCGA-DD-A3A3-01 4 123900511 123900511 C T SPATA5 Silent p.A613A 0.33 TCGA-DD-A3A3-01 4 25664369 25664369 C T SLC34A2 Missense_Mutation p.P52L 0.33 tolerated(0.06) benign(0.117) TCGA-DD-A3A3-01 4 55976858 55976858 C A KDR Missense_Mutation p.A352S 0.40 deleterious(0) benign(0.175) TCGA-DD-A3A3-01 4 8465812 8465812 C T TRMT44 Missense_Mutation p.A435V 0.41 deleterious(0) probably_damaging(0.973) TCGA-DD-A3A3-01 5 118484603 118484603 A G DMXL1 Silent p.P1027P 0.26 TCGA-DD-A3A3-01 5 1318380 1318380 T C CLPTM1L 3'UTR 0.40 TCGA-DD-A3A3-01 5 139852005 139852005 C T ANKHD1 Intron 0.46 TCGA-DD-A3A3-01 5 140720406 140720406 C T PCDHGA2 Missense_Mutation p.T623M 0.39 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DD-A3A3-01 5 36976173 36976173 T A NIPBL Missense_Mutation p.N388K 0.53 tolerated_low_confidence(0.27) benign(0.005) TCGA-DD-A3A3-01 5 64314004 64314005 - TT CWC27 Frame_Shift_Ins p.E427Lfs*8 0.37 TCGA-DD-A3A3-01 6 154412549 154412549 G A OPRM1 Missense_Mutation p.R462H 0.30 deleterious(0) benign(0.399) TCGA-DD-A3A3-01 6 31783358 31783358 C G HSPA1L 5'Flank 0.17 TCGA-DD-A3A3-01 6 38747842 38747842 G T DNAH8 Splice_Site p.X496_splice 0.26 TCGA-DD-A3A3-01 7 134618234 134618234 T C CALD1 Silent p.P238P 0.04 TCGA-DD-A3A3-01 7 24690139 24690139 A G MPP6 Silent p.V153V 0.37 TCGA-DD-A3A3-01 7 92733944 92733944 G A SAMD9 Silent p.P489P 0.39 TCGA-DD-A3A3-01 8 11177448 11177448 G C MTMR9 Intron 0.38 TCGA-DD-A3A3-01 8 134232984 134232984 G A WISP1 Silent p.P170P 0.20 TCGA-DD-A3A3-01 8 65494997 65494997 T C BHLHE22 3'UTR 0.10 TCGA-DD-A3A3-01 9 131566320 131566320 G T TBC1D13 Silent p.S280S 0.38 TCGA-DD-A3A3-01 9 37769962 37769962 T C TRMT10B Missense_Mutation p.F200L 0.06 tolerated(0.95) benign(0.004) TCGA-DD-A3A3-01 9 79323927 79323927 T G PRUNE2 Missense_Mutation p.Y1088S 0.39 deleterious(0.05) probably_damaging(0.962) TCGA-DD-A3A3-01 X 129200820 129200820 G T ELF4 Missense_Mutation p.S623Y 0.70 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-DD-A3A3-01 X 38020249 38020249 G A SRPX Nonsense_Mutation p.Q238* 0.68 TCGA-DD-A3A4-01 10 100183612 100183612 T C HPS1 Missense_Mutation p.Q477R 0.08 tolerated(0.05) possibly_damaging(0.562) TCGA-DD-A3A4-01 10 113913361 113913364 GAGG - GPAM Frame_Shift_Del p.P811Nfs*8 0.35 TCGA-DD-A3A4-01 10 71835423 71835423 C - H2AFY2 Frame_Shift_Del p.R4Gfs*25 0.23 TCGA-DD-A3A4-01 10 72301249 72301249 G A PALD1 Missense_Mutation p.V694M 0.31 deleterious(0) possibly_damaging(0.694) TCGA-DD-A3A4-01 12 111746258 111746258 C A CUX2 Missense_Mutation p.L396I 0.47 deleterious(0) benign(0.334) TCGA-DD-A3A4-01 12 117465265 117465265 G A FBXW8 Silent p.T536T 0.52 TCGA-DD-A3A4-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.46 deleterious(0.04) possibly_damaging(0.506) TCGA-DD-A3A4-01 12 58001190 58001190 C T DTX3 Missense_Mutation p.H182Y 0.42 deleterious(0) possibly_damaging(0.874) TCGA-DD-A3A4-01 13 33859883 33859883 A G STARD13 5'UTR 0.43 TCGA-DD-A3A4-01 14 107178850 107178850 C A IGHV2-70 Silent p.V109V 0.37 TCGA-DD-A3A4-01 14 58838777 58838777 C T ARID4A 3'UTR 0.44 TCGA-DD-A3A4-01 15 43656356 43656356 T G ZSCAN29 Missense_Mutation p.T483P 0.35 deleterious(0.04) benign(0.26) TCGA-DD-A3A4-01 15 92988127 92988127 C T ST8SIA2 Silent p.Y270Y 0.45 TCGA-DD-A3A4-01 16 47630379 47630379 T A PHKB Missense_Mutation p.C434S 0.26 tolerated(0.73) benign(0.004) TCGA-DD-A3A4-01 17 32959873 32959873 G C TMEM132E Missense_Mutation p.D455H 0.23 deleterious(0) probably_damaging(1) TCGA-DD-A3A4-01 17 45925436 45925436 C A SP6 Missense_Mutation p.W120C 0.41 deleterious(0) probably_damaging(0.993) TCGA-DD-A3A4-01 18 59947916 59947948 ATTATGGAAACAGTAATTCAAAGAGAGGTAGGA - KIAA1468 Splice_Site p.X1030_splice 0.29 TCGA-DD-A3A4-01 19 1112842 1112842 T C SBNO2 Missense_Mutation p.K785R 0.20 tolerated(0.07) probably_damaging(0.99) TCGA-DD-A3A4-01 19 35828792 35828792 T C CD22 Missense_Mutation p.S285P 0.08 tolerated(0.37) benign(0) TCGA-DD-A3A4-01 19 38877740 38877740 G A GGN Silent p.S54S 0.17 TCGA-DD-A3A4-01 19 53612315 53612315 T A ZNF415 Missense_Mutation p.Y328F 0.35 deleterious(0.03) possibly_damaging(0.894) TCGA-DD-A3A4-01 1 104293194 104293194 C T AMY1C Nonsense_Mutation p.R35* 0.15 TCGA-DD-A3A4-01 1 170007568 170007568 T A KIFAP3 Missense_Mutation p.D127V 0.31 deleterious(0.03) possibly_damaging(0.835) TCGA-DD-A3A4-01 1 183885770 183885770 G T RGL1 Nonsense_Mutation p.E682* 0.38 TCGA-DD-A3A4-01 1 192985265 192985265 A G UCHL5 3'UTR 0.16 TCGA-DD-A3A4-01 1 249211640 249211640 G T PGBD2 Missense_Mutation p.R286M 0.49 tolerated(0.08) benign(0.061) TCGA-DD-A3A4-01 1 34667861 34667861 G T C1orf94 Splice_Site p.X482_splice 0.37 TCGA-DD-A3A4-01 20 1285530 1285530 A G SNPH Missense_Mutation p.E106G 0.10 deleterious(0) probably_damaging(1) TCGA-DD-A3A4-01 20 39989853 39989853 G C EMILIN3 3'UTR 0.29 TCGA-DD-A3A4-01 21 44270039 44270039 C T WDR4 3'UTR 0.44 TCGA-DD-A3A4-01 22 42608580 42608580 G C TCF20 Missense_Mutation p.P911R 0.38 probably_damaging(0.98) TCGA-DD-A3A4-01 2 182350624 182350624 C T ITGA4 Missense_Mutation p.A353V 0.37 deleterious(0.02) benign(0.053) TCGA-DD-A3A4-01 2 202902701 202902701 C T FZD7 3'UTR 0.04 TCGA-DD-A3A4-01 2 234171807 234171807 C G ATG16L1 Missense_Mutation p.Q81E 0.27 tolerated(1) benign(0.438) TCGA-DD-A3A4-01 2 99454679 99454679 A G KIAA1211L Missense_Mutation p.S48P 0.48 deleterious(0.05) possibly_damaging(0.504) TCGA-DD-A3A4-01 2 99953881 99953881 G T EIF5B 5'UTR 0.36 TCGA-DD-A3A4-01 3 183855595 183855595 T A EIF2B5 Splice_Site p.X169_splice 0.39 TCGA-DD-A3A4-01 3 41268766 41268766 A T CTNNB1 Missense_Mutation p.K335I 0.42 deleterious(0) probably_damaging(0.957) TCGA-DD-A3A4-01 3 70014270 70014270 C A MITF Silent p.I478I 0.40 TCGA-DD-A3A4-01 3 96706703 96706703 G A EPHA6 Missense_Mutation p.R327Q 0.39 tolerated(0.06) probably_damaging(0.998) TCGA-DD-A3A4-01 5 60083199 60083199 C A ELOVL7 Missense_Mutation p.R9M 0.50 tolerated(0.07) benign(0.264) TCGA-DD-A3A4-01 5 79035108 79035108 C A CMYA5 Missense_Mutation p.S3507Y 0.38 probably_damaging(0.92) TCGA-DD-A3A4-01 7 149557718 149557718 G T ZNF862 Missense_Mutation p.C490F 0.28 deleterious(0) probably_damaging(0.999) TCGA-DD-A3A4-01 7 149557719 149557719 C A ZNF862 Nonsense_Mutation p.C490* 0.29 TCGA-DD-A3A4-01 7 20418810 20418810 A T ITGB8 Missense_Mutation p.R175S 0.45 tolerated(0.08) benign(0.155) TCGA-DD-A3A4-01 7 21657266 21657266 C T DNAH11 Silent p.R1380R 0.34 TCGA-DD-A3A4-01 7 65435332 65435332 T C GUSB Silent p.K471K 0.39 TCGA-DD-A3A4-01 7 82595422 82595422 G A PCLO Missense_Mutation p.R1228C 0.03 unknown(0) TCGA-DD-A3A4-01 8 101054142 101054142 G A RGS22 Missense_Mutation p.S609L 0.36 tolerated(0.24) benign(0.004) TCGA-DD-A3A4-01 8 2876120 2876120 C T CSMD1 Silent p.T2636T 0.35 TCGA-DD-A3A4-01 8 38370074 38370074 A G C8orf86 Missense_Mutation p.L168P 0.06 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-DD-A3A4-01 8 52384855 52384855 C T PXDNL Missense_Mutation p.R235Q 0.38 tolerated(0.24) possibly_damaging(0.663) TCGA-DD-A3A4-01 8 86360370 86360370 T C CA3 Silent p.A257A 0.07 TCGA-DD-A3A4-01 9 15506558 15506558 C A PSIP1 Splice_Site p.X50_splice 0.24 TCGA-DD-A3A4-01 X 47516683 47516683 A G UXT Silent p.D97D 0.75 TCGA-DD-A3A4-01 X 54044138 54044138 A C PHF8 Missense_Mutation p.L173R 0.73 deleterious(0) possibly_damaging(0.902) TCGA-DD-A3A5-01 10 124390621 124390621 G C DMBT1 Missense_Mutation p.G1928A 0.28 deleterious(0.01) probably_damaging(0.963) TCGA-DD-A3A5-01 10 1779280 1779280 G C ADARB2 Missense_Mutation p.S22C 0.45 tolerated_low_confidence(0.09) probably_damaging(0.971) TCGA-DD-A3A5-01 10 22207780 22207780 C T DNAJC1 Nonsense_Mutation p.W219* 0.45 TCGA-DD-A3A5-01 11 133815979 133815979 G A IGSF9B Missense_Mutation p.P80L 0.43 deleterious(0) probably_damaging(0.999) TCGA-DD-A3A5-01 11 33037511 33037511 G A DEPDC7 Missense_Mutation p.V4M 0.35 deleterious(0) probably_damaging(0.987) TCGA-DD-A3A5-01 11 4674237 4674237 C T OR51E1 Missense_Mutation p.P161S 0.42 deleterious(0.01) probably_damaging(1) TCGA-DD-A3A5-01 11 6129479 6129479 G T OR56B4 Missense_Mutation p.R157S 0.43 deleterious(0) probably_damaging(0.954) TCGA-DD-A3A5-01 12 10525808 10525808 T A KLRK1 Nonsense_Mutation p.K186* 0.39 TCGA-DD-A3A5-01 12 113704076 113704076 T C TPCN1 Missense_Mutation p.L182P 0.42 deleterious(0.03) probably_damaging(0.956) TCGA-DD-A3A5-01 12 118639247 118639247 G T TAOK3 Silent p.R281R 0.36 TCGA-DD-A3A5-01 12 120578768 120578768 C A GCN1L1 Missense_Mutation p.E1963D 0.43 benign(0.174) TCGA-DD-A3A5-01 12 132471242 132471242 C T EP400 Missense_Mutation p.R705W 0.33 unknown(0) TCGA-DD-A3A5-01 12 14939918 14939918 T C WBP11 3'UTR 0.12 TCGA-DD-A3A5-01 12 21069193 21069193 T C SLCO1B3 3'UTR 0.42 TCGA-DD-A3A5-01 12 32369238 32369238 G T BICD1 Nonsense_Mutation p.E91* 0.36 TCGA-DD-A3A5-01 12 68553297 68553297 G C IFNG Missense_Mutation p.N33K 0.35 tolerated(1) benign(0.043) TCGA-DD-A3A5-01 12 75893782 75893782 A - GLIPR1 3'UTR 0.24 TCGA-DD-A3A5-01 12 8212610 8212610 T C C3AR1 Missense_Mutation p.T58A 0.39 deleterious(0.01) probably_damaging(0.988) TCGA-DD-A3A5-01 13 103385109 103385109 C A CCDC168 Nonsense_Mutation p.E1351* 0.39 TCGA-DD-A3A5-01 13 66878683 66878683 G A PCDH9 3'UTR 0.09 TCGA-DD-A3A5-01 14 45700393 45700393 A G MIS18BP1 Silent p.D515D 0.40 TCGA-DD-A3A5-01 14 75580093 75580093 C T NEK9 Missense_Mutation p.R296K 0.18 deleterious(0) probably_damaging(0.999) TCGA-DD-A3A5-01 14 80328058 80328058 C A NRXN3 Silent p.I979I 0.51 TCGA-DD-A3A5-01 15 42437866 42437866 C T PLA2G4F Missense_Mutation p.A563T 0.52 tolerated(0.07) probably_damaging(0.995) TCGA-DD-A3A5-01 16 27460191 27460191 C T IL21R Silent p.L402L 0.42 TCGA-DD-A3A5-01 16 27460214 27460214 G T IL21R Missense_Mutation p.E409D 0.34 tolerated(0.17) benign(0.034) TCGA-DD-A3A5-01 16 27561479 27561479 G A KIAA0556 5'UTR 0.25 TCGA-DD-A3A5-01 16 31212988 31212988 C T PYCARD Nonsense_Mutation p.W169* 0.24 TCGA-DD-A3A5-01 16 66434787 66434787 A G CDH5 Missense_Mutation p.S569G 0.35 tolerated(0.17) benign(0.011) TCGA-DD-A3A5-01 16 733364 733364 C T JMJD8 Missense_Mutation p.G178S 0.60 tolerated(0.74) benign(0.03) TCGA-DD-A3A5-01 17 17398678 17398678 G A RASD1 Missense_Mutation p.P203S 0.87 deleterious(0) probably_damaging(1) TCGA-DD-A3A5-01 17 35872856 35872856 A G DUSP14 Missense_Mutation p.Y161C 0.39 deleterious(0) probably_damaging(1) TCGA-DD-A3A5-01 17 39872101 39872101 C T GAST Missense_Mutation p.R95C 0.37 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-DD-A3A5-01 17 40179065 40179065 G T ZNF385C Silent p.I450I 0.44 TCGA-DD-A3A5-01 17 53798239 53798239 A G TMEM100 Missense_Mutation p.F65L 0.06 tolerated(1) benign(0.001) TCGA-DD-A3A5-01 17 76462860 76462860 C A DNAH17 Silent p.R2925R 0.53 TCGA-DD-A3A5-01 18 14851780 14851780 T C ANKRD30B Silent p.S1160S 0.03 TCGA-DD-A3A5-01 18 72998476 72998476 G A TSHZ1 Missense_Mutation p.A327T 0.42 tolerated(0.95) benign(0.002) TCGA-DD-A3A5-01 19 42266039 42266039 T C CEACAM6 Missense_Mutation p.I289T 0.37 deleterious(0) probably_damaging(0.952) TCGA-DD-A3A5-01 19 48718639 48718639 C A CARD8 Missense_Mutation p.D436Y 0.36 deleterious(0) probably_damaging(0.993) TCGA-DD-A3A5-01 19 52938382 52938382 G A ZNF534 Missense_Mutation p.R77K 0.42 tolerated(0.71) benign(0.001) TCGA-DD-A3A5-01 19 54726884 54726884 G T LILRB3 5'Flank 0.18 TCGA-DD-A3A5-01 19 58944869 58944870 CT - ZNF132 Frame_Shift_Del p.R647Sfs*9 0.28 TCGA-DD-A3A5-01 19 758170 758170 C T MISP Silent p.A408A 0.34 TCGA-DD-A3A5-01 1 111147255 111147255 G T KCNA2 Silent p.T50T 0.45 TCGA-DD-A3A5-01 1 1289853 1289853 A G MXRA8 Missense_Mutation p.V329A 0.14 deleterious(0) benign(0.183) TCGA-DD-A3A5-01 1 1342350 1342350 A G MRPL20 Missense_Mutation p.V46A 0.15 deleterious(0.04) possibly_damaging(0.64) TCGA-DD-A3A5-01 1 14075915 14075915 A G PRDM2 Missense_Mutation p.I148M 0.50 possibly_damaging(0.762) TCGA-DD-A3A5-01 1 144912287 144912287 G A PDE4DIP Missense_Mutation p.A663V 0.21 tolerated(0.05) benign(0.05) TCGA-DD-A3A5-01 1 158812126 158812126 T C MNDA Silent p.C61C 0.42 TCGA-DD-A3A5-01 1 15986764 15986764 C A RSC1A1 Missense_Mutation p.S134Y 0.48 deleterious(0) probably_damaging(0.959) TCGA-DD-A3A5-01 1 19568867 19568867 G C EMC1 Missense_Mutation p.L161V 0.48 tolerated(0.11) benign(0.002) TCGA-DD-A3A5-01 1 197446818 197446818 A G CRB1 Missense_Mutation p.I1344V 0.46 tolerated(0.56) benign(0.001) TCGA-DD-A3A5-01 1 204394045 204394058 GCTCTCGCAGGCGG - PIK3C2B Frame_Shift_Del p.R1610Gfs*75 0.41 TCGA-DD-A3A5-01 1 237758830 237758830 C T RYR2 Missense_Mutation p.A1490V 0.46 benign(0.12) TCGA-DD-A3A5-01 1 36068746 36068746 T C PSMB2 3'UTR 0.48 TCGA-DD-A3A5-01 1 60223627 60223627 G T FGGY Missense_Mutation p.V537F 0.37 tolerated(0.11) possibly_damaging(0.564) TCGA-DD-A3A5-01 1 68171260 68171260 C G GNG12 Splice_Site p.X32_splice 0.22 TCGA-DD-A3A5-01 1 70339281 70339281 G A LRRC7 Intron 0.32 TCGA-DD-A3A5-01 21 40794906 40794907 - T LCA5L Frame_Shift_Ins p.I278Nfs*16 0.29 TCGA-DD-A3A5-01 22 25275471 25275471 C A SGSM1 Silent p.I546I 0.48 TCGA-DD-A3A5-01 2 113147588 113147588 A C RGPD8 Silent p.T978T 0.07 TCGA-DD-A3A5-01 2 166806244 166806244 A C TTC21B Intron 0.55 TCGA-DD-A3A5-01 2 18113077 18113077 G T KCNS3 Missense_Mutation p.A268S 0.39 tolerated(0.07) possibly_damaging(0.86) TCGA-DD-A3A5-01 2 20939926 20939926 T C C2orf43 Missense_Mutation p.M170V 0.63 deleterious(0.01) benign(0.259) TCGA-DD-A3A5-01 2 21251347 21251347 C A APOB Missense_Mutation p.A561S 0.42 probably_damaging(0.998) TCGA-DD-A3A5-01 2 218940360 218940360 C T RUFY4 Missense_Mutation p.T402I 0.51 tolerated(0.09) possibly_damaging(0.855) TCGA-DD-A3A5-01 2 29940532 29940532 C A ALK Missense_Mutation p.M233I 0.28 tolerated_low_confidence(0.46) benign(0) TCGA-DD-A3A5-01 2 39088480 39088480 G A DHX57 Nonsense_Mutation p.R358* 0.35 TCGA-DD-A3A5-01 2 54859819 54859819 T C SPTBN1 Silent p.A1227A 0.39 TCGA-DD-A3A5-01 2 74699318 74699318 G C MRPL53 Silent p.A89A 0.40 TCGA-DD-A3A5-01 2 74785860 74785860 C T M1AP Missense_Mutation p.D526N 0.51 tolerated_low_confidence(0.3) benign(0.006) TCGA-DD-A3A5-01 2 89103596 89103596 G C ANKRD36BP2 RNA 0.67 TCGA-DD-A3A5-01 2 96076720 96076720 T C FAHD2A Missense_Mutation p.F211L 0.44 tolerated(0.28) benign(0.1) TCGA-DD-A3A5-01 3 131081026 131081026 G T NUDT16P1 RNA 0.33 TCGA-DD-A3A5-01 3 186501388 186501389 - T EIF4A2 5'UTR 0.18 TCGA-DD-A3A5-01 3 25805746 25805746 A T NGLY1 Silent p.I101I 0.43 TCGA-DD-A3A5-01 3 57994556 57994556 C G FLNB Missense_Mutation p.R89G 0.49 deleterious(0.02) benign(0.008) TCGA-DD-A3A5-01 3 66502014 66502014 C T LRIG1 Missense_Mutation p.A112T 0.44 tolerated(0.5) benign(0.007) TCGA-DD-A3A5-01 3 69168641 69168641 A G LMOD3 Silent p.L289L 0.05 TCGA-DD-A3A5-01 4 68539451 68539451 G C UBA6 Missense_Mutation p.I170M 0.46 deleterious(0) benign(0.278) TCGA-DD-A3A5-01 4 995816 995816 C T IDUA Missense_Mutation p.A280V 0.31 tolerated(1) benign(0.003) TCGA-DD-A3A5-01 5 140745170 140745170 A G PCDHGA5 Missense_Mutation p.M425V 0.47 tolerated_low_confidence(0.08) benign(0.001) TCGA-DD-A3A5-01 5 175717553 175717553 G T SIMC1 Intron 0.43 TCGA-DD-A3A5-01 5 63256470 63256470 C T HTR1A Silent p.L359L 0.49 TCGA-DD-A3A5-01 5 95414907 95414907 C T MIR583 RNA 0.43 TCGA-DD-A3A5-01 6 127796693 127796693 G A SOGA3 Silent p.G826G 0.39 TCGA-DD-A3A5-01 6 20481646 20481646 G A E2F3 Missense_Mutation p.V239I 0.34 tolerated(1) benign(0.023) TCGA-DD-A3A5-01 6 30918729 30918729 G A DPCR1 Missense_Mutation p.A830T 0.31 tolerated(0.32) benign(0.001) TCGA-DD-A3A5-01 7 11676308 11676308 C G THSD7A Missense_Mutation p.E157D 0.34 tolerated(0.28) benign(0.002) TCGA-DD-A3A5-01 7 142651031 142651031 C T KEL Missense_Mutation p.A313T 0.55 deleterious(0.03) benign(0.323) TCGA-DD-A3A5-01 8 21856326 21856326 C T XPO7 Silent p.T802T 0.10 TCGA-DD-A3A5-01 9 135507429 135507429 T A DDX31 Missense_Mutation p.Q602L 0.05 deleterious(0) probably_damaging(1) TCGA-DD-A3A5-01 9 27950509 27950509 C A LINGO2 Missense_Mutation p.G54V 0.03 deleterious(0) probably_damaging(1) TCGA-DD-A3A5-01 X 128641995 128641995 T A SMARCA1 Nonsense_Mutation p.K297* 0.40 TCGA-DD-A3A5-01 X 70444424 70444424 C T GJB1 3'UTR 0.41 TCGA-DD-A3A6-01 10 116417799 116417799 C T ABLIM1 Missense_Mutation p.R54H 0.11 deleterious_low_confidence(0.01) benign(0.001) TCGA-DD-A3A6-01 10 135032389 135032389 C T KNDC1 Nonsense_Mutation p.Q1578* 0.15 TCGA-DD-A3A6-01 10 93902837 93902837 C T CPEB3 Missense_Mutation p.V468I 0.12 tolerated(0.19) benign(0.242) TCGA-DD-A3A6-01 11 18010209 18010209 T G SERGEF Missense_Mutation p.H260P 0.14 tolerated(0.24) benign(0.002) TCGA-DD-A3A6-01 11 57137453 57137453 T C P2RX3 Missense_Mutation p.F393L 0.07 tolerated(0.18) benign(0.001) TCGA-DD-A3A6-01 11 65111286 65111286 G A DPF2 Missense_Mutation p.R179H 0.05 deleterious(0) possibly_damaging(0.789) TCGA-DD-A3A6-01 12 109838904 109838904 C A MYO1H Missense_Mutation p.P177T 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-DD-A3A6-01 12 3600744 3600744 T C PRMT8 5'UTR 0.27 TCGA-DD-A3A6-01 14 107282864 107282864 G A IGHV7-81 Silent p.T93T 0.09 TCGA-DD-A3A6-01 14 66188664 66188665 - A FUT8 Frame_Shift_Ins p.R337Pfs*44 0.09 TCGA-DD-A3A6-01 15 65563339 65563339 G A PARP16 Silent p.A82A 0.10 TCGA-DD-A3A6-01 16 2130279 2130279 G - TSC2 Frame_Shift_Del p.A1171Lfs*20 0.12 TCGA-DD-A3A6-01 17 7010457 7010457 G A ASGR2 Silent p.T175T 0.06 TCGA-DD-A3A6-01 19 58439199 58439199 T G ZNF418 Missense_Mutation p.N117T 0.03 tolerated(0.1) benign(0.023) TCGA-DD-A3A6-01 19 7051578 7051578 A T MBD3L2 Missense_Mutation p.K191M 0.09 tolerated(0.15) benign(0.043) TCGA-DD-A3A6-01 1 109479980 109479980 T C CLCC1 Missense_Mutation p.S368G 0.06 deleterious(0.04) benign(0.102) TCGA-DD-A3A6-01 1 153004891 153004891 C T SPRR1B Missense_Mutation p.P24S 0.05 deleterious(0) unknown(0) TCGA-DD-A3A6-01 1 196800931 196800931 G A CFHR1 Silent p.P265P 0.09 TCGA-DD-A3A6-01 1 225599103 225599103 T C LBR Missense_Mutation p.N375S 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-DD-A3A6-01 1 55272679 55272679 T C C1orf177 Missense_Mutation p.S39P 0.10 deleterious(0.04) probably_damaging(0.943) TCGA-DD-A3A6-01 20 257508 257508 G A C20orf96 Missense_Mutation p.P280S 0.12 deleterious(0.02) probably_damaging(0.941) TCGA-DD-A3A6-01 22 30038257 30038258 - A NF2 Nonsense_Mutation p.Y144* 0.15 TCGA-DD-A3A6-01 2 170062972 170062972 T C LRP2 Missense_Mutation p.T2420A 0.05 benign(0.028) TCGA-DD-A3A6-01 2 179463630 179463630 C T TTN Missense_Mutation p.R18936Q 0.11 TCGA-DD-A3A6-01 3 89480486 89480486 C T EPHA3 Missense_Mutation p.P775S 0.09 tolerated(0.38) probably_damaging(0.996) TCGA-DD-A3A6-01 4 183694627 183694627 A G TENM3 Missense_Mutation p.Y1632C 0.11 deleterious(0) possibly_damaging(0.827) TCGA-DD-A3A6-01 5 5209306 5209306 T A ADAMTS16 Missense_Mutation p.C518S 0.05 deleterious(0) probably_damaging(0.988) TCGA-DD-A3A6-01 6 119327610 119327610 A G FAM184A Splice_Site p.X605_splice 0.17 TCGA-DD-A3A6-01 6 165715587 165715587 G A C6orf118 Missense_Mutation p.T75M 0.07 deleterious(0.04) possibly_damaging(0.692) TCGA-DD-A3A6-01 7 129110535 129110535 G C STRIP2 Silent p.P641P 0.18 TCGA-DD-A3A6-01 9 139265546 139265546 T C CARD9 Missense_Mutation p.K125R 0.07 tolerated(0.33) benign(0.147) TCGA-DD-A3A6-01 9 14720318 14720318 A G CER1 Missense_Mutation p.S192P 0.12 deleterious(0.01) probably_damaging(0.976) TCGA-DD-A3A6-01 9 32631815 32631815 G A TAF1L Missense_Mutation p.R1255W 0.13 deleterious(0) probably_damaging(0.998) TCGA-DD-A3A6-01 X 46951499 46951499 C A RGN Missense_Mutation p.T245K 0.14 deleterious(0.02) probably_damaging(0.99) TCGA-DD-A3A7-01 10 17905586 17905586 T C MRC1L1 Silent p.P559P 0.38 TCGA-DD-A3A7-01 10 18250660 18250660 A G SLC39A12 Missense_Mutation p.K138E 0.44 tolerated(0.26) benign(0.005) TCGA-DD-A3A7-01 10 70508892 70508892 G T CCAR1 Splice_Site p.X276_splice 0.48 TCGA-DD-A3A7-01 10 70508893 70508893 C T CCAR1 Missense_Mutation p.A276V 0.48 tolerated(0.27) benign(0.019) TCGA-DD-A3A7-01 10 8006438 8006438 A G TAF3 Missense_Mutation p.K322R 0.42 tolerated_low_confidence(0.05) probably_damaging(0.987) TCGA-DD-A3A7-01 11 105789505 105789505 A G GRIA4 Missense_Mutation p.Y446C 0.38 deleterious(0) probably_damaging(0.985) TCGA-DD-A3A7-01 11 108064705 108064714 ACTCATTTAA - NPAT Frame_Shift_Del p.L63Mfs*2 0.29 TCGA-DD-A3A7-01 11 111851539 111851539 T C DIXDC1 Missense_Mutation p.V245A 0.46 tolerated(0.23) benign(0.009) TCGA-DD-A3A7-01 11 122931847 122931847 G A HSPA8 Silent p.N62N 0.12 TCGA-DD-A3A7-01 11 134158769 134158769 G A GLB1L3 Missense_Mutation p.M238I 0.38 deleterious(0) possibly_damaging(0.893) TCGA-DD-A3A7-01 11 17742472 17742472 C A MYOD1 Missense_Mutation p.S218R 0.58 tolerated(0.37) benign(0.019) TCGA-DD-A3A7-01 11 31482231 31482232 - A IMMP1L Frame_Shift_Ins p.Q46Sfs*12 0.27 TCGA-DD-A3A7-01 11 56000436 56000441 AGAGGT - OR5T2 In_Frame_Del p.Y74_L75del 0.24 TCGA-DD-A3A7-01 11 56019970 56019970 T A OR5T3 Missense_Mutation p.L99M 0.38 deleterious(0.02) probably_damaging(0.928) TCGA-DD-A3A7-01 11 57947370 57947370 G T OR9Q1 Missense_Mutation p.G152C 0.39 deleterious(0) probably_damaging(1) TCGA-DD-A3A7-01 11 6579425 6579425 C T DNHD1 Missense_Mutation p.P2967L 0.33 probably_damaging(1) TCGA-DD-A3A7-01 11 66135010 66135010 G A SLC29A2 Missense_Mutation p.R220C 0.35 deleterious(0.02) possibly_damaging(0.863) TCGA-DD-A3A7-01 11 76063257 76063257 T C PRKRIR Missense_Mutation p.M313V 0.38 tolerated(0.23) benign(0.001) TCGA-DD-A3A7-01 11 77920573 77920573 C A USP35 Missense_Mutation p.P558T 0.41 tolerated(0.51) unknown(0) TCGA-DD-A3A7-01 12 113304627 113304627 C G RPH3A Missense_Mutation p.I142M 0.21 deleterious(0) probably_damaging(0.999) TCGA-DD-A3A7-01 12 14631250 14631250 G T ATF7IP Splice_Site p.X981_splice 0.59 TCGA-DD-A3A7-01 12 14631251 14631251 A C ATF7IP Missense_Mutation p.D981A 0.59 deleterious_low_confidence(0) unknown(0) TCGA-DD-A3A7-01 12 27919595 27919595 T A MANSC4 Intron 0.69 TCGA-DD-A3A7-01 12 40687370 40687370 A T LRRK2 Nonsense_Mutation p.K905* 0.73 TCGA-DD-A3A7-01 12 41957413 41957413 A G PDZRN4 Missense_Mutation p.K477E 0.67 tolerated(0.1) possibly_damaging(0.582) TCGA-DD-A3A7-01 12 49416062 49416062 C A KMT2D Splice_Site p.X5471_splice 0.20 TCGA-DD-A3A7-01 12 59313326 59313326 A C LRIG3 Intron 0.29 TCGA-DD-A3A7-01 12 68053460 68053460 G A DYRK2 3'UTR 0.71 TCGA-DD-A3A7-01 12 6973284 6973284 T G USP5 Silent p.P723P 0.63 TCGA-DD-A3A7-01 13 111927941 111927941 C A ARHGEF7 Silent p.I466I 0.27 TCGA-DD-A3A7-01 13 19748160 19748160 T C TUBA3C Missense_Mutation p.Y399C 0.32 deleterious_low_confidence(0.02) probably_damaging(0.933) TCGA-DD-A3A7-01 13 33681023 33681023 G C STARD13 Silent p.L1032L 0.25 TCGA-DD-A3A7-01 13 52301872 52301872 C A WDFY2 Missense_Mutation p.L182I 0.22 deleterious(0.03) probably_damaging(0.978) TCGA-DD-A3A7-01 13 77740568 77740568 T C MYCBP2 Missense_Mutation p.Y2041C 0.27 benign(0.213) TCGA-DD-A3A7-01 14 24035225 24035225 T C AP1G2 Intron 0.58 TCGA-DD-A3A7-01 14 67346716 67346716 A T GPHN Silent p.G118G 0.68 TCGA-DD-A3A7-01 14 95669653 95669653 T C CLMN Missense_Mutation p.D678G 0.10 tolerated_low_confidence(1) benign(0) TCGA-DD-A3A7-01 15 51839582 51839582 C T DMXL2 Nonsense_Mutation p.W197* 0.22 TCGA-DD-A3A7-01 15 63419842 63419842 T G LACTB Missense_Mutation p.I302M 0.41 tolerated(0.09) benign(0.102) TCGA-DD-A3A7-01 15 66180243 66180243 A G RAB11A 3'UTR 0.44 TCGA-DD-A3A7-01 15 70343755 70343755 G A TLE3 Missense_Mutation p.T729M 0.06 deleterious(0) probably_damaging(1) TCGA-DD-A3A7-01 15 72338583 72338583 T G MYO9A Silent p.R108R 0.47 TCGA-DD-A3A7-01 16 23646316 23646316 T C PALB2 Silent p.K517K 0.44 TCGA-DD-A3A7-01 16 27225073 27225073 G C KDM8 Splice_Site p.X260_splice 0.33 TCGA-DD-A3A7-01 16 29814926 29814926 C G KIF22 Missense_Mutation p.L536V 0.09 tolerated(0.85) possibly_damaging(0.708) TCGA-DD-A3A7-01 16 29992748 29992748 G A TAOK2 Intron 0.50 TCGA-DD-A3A7-01 16 48242358 48242358 A G ABCC11 Missense_Mutation p.L553P 0.09 deleterious(0) probably_damaging(1) TCGA-DD-A3A7-01 16 4935181 4935181 A G PPL Missense_Mutation p.W1159R 0.37 tolerated(0.58) benign(0.001) TCGA-DD-A3A7-01 16 5108602 5108602 G C C16orf89 Missense_Mutation p.S173R 0.33 deleterious(0.05) benign(0.1) TCGA-DD-A3A7-01 16 57054706 57054706 C A NLRC5 Missense_Mutation p.L28M 0.25 deleterious(0.03) possibly_damaging(0.762) TCGA-DD-A3A7-01 16 67424967 67424967 C T TPPP3 Silent p.K16K 0.19 TCGA-DD-A3A7-01 16 68953097 68953097 C T TANGO6 Missense_Mutation p.A701V 0.08 deleterious(0) possibly_damaging(0.694) TCGA-DD-A3A7-01 16 74487222 74487222 G A GLG1 Missense_Mutation p.A1128V 0.42 tolerated(0.32) benign(0.018) TCGA-DD-A3A7-01 16 89724560 89724560 G T SPATA33 Intron 0.38 TCGA-DD-A3A7-01 16 904604 904604 G T LMF1 Missense_Mutation p.F544L 0.45 tolerated(0.57) benign(0.063) TCGA-DD-A3A7-01 17 1264424 1264424 G T YWHAE Missense_Mutation p.F180L 0.70 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DD-A3A7-01 17 34935776 34935776 A T GGNBP2 Missense_Mutation p.K316M 0.19 deleterious(0) probably_damaging(0.975) TCGA-DD-A3A7-01 17 39334360 39334360 G C KRTAP4-2 Missense_Mutation p.N19K 0.27 deleterious(0.02) unknown(0) TCGA-DD-A3A7-01 17 39341295 39341295 A T KRTAP4-1 5'UTR 0.19 TCGA-DD-A3A7-01 17 40962923 40962923 A G BECN1 Missense_Mutation p.I403T 0.68 deleterious(0) probably_damaging(0.932) TCGA-DD-A3A7-01 17 7578525 7578525 G T TP53 Nonsense_Mutation p.C135* 0.73 TCGA-DD-A3A7-01 18 65178248 65178248 T A DSEL Missense_Mutation p.T1210S 0.33 tolerated(0.88) benign(0.023) TCGA-DD-A3A7-01 18 72187348 72187348 C T CNDP2 3'UTR 0.50 TCGA-DD-A3A7-01 18 7906552 7906552 A C PTPRM Missense_Mutation p.D173A 0.33 tolerated(0.05) benign(0.069) TCGA-DD-A3A7-01 19 15367957 15367957 T A BRD4 Missense_Mutation p.M457L 0.29 benign(0.008) TCGA-DD-A3A7-01 19 39297124 39297124 C T LGALS4 Missense_Mutation p.G151R 0.10 deleterious(0) probably_damaging(0.993) TCGA-DD-A3A7-01 19 42224926 42224926 C T CEACAM5 Missense_Mutation p.S619F 0.44 deleterious(0) probably_damaging(0.989) TCGA-DD-A3A7-01 19 44681511 44681511 A G ZNF226 Missense_Mutation p.Y699C 0.51 deleterious(0) probably_damaging(1) TCGA-DD-A3A7-01 19 55253485 55253485 A G KIR2DL3 Missense_Mutation p.T44A 0.94 tolerated(0.09) probably_damaging(0.986) TCGA-DD-A3A7-01 19 56393064 56393064 G A NLRP4 3'UTR 0.23 TCGA-DD-A3A7-01 1 152191055 152191055 C G HRNR Missense_Mutation p.G1017A 0.08 unknown(0) TCGA-DD-A3A7-01 1 152279315 152279315 C T FLG Missense_Mutation p.G2683R 0.16 possibly_damaging(0.878) TCGA-DD-A3A7-01 1 152816050 152816050 C T LCE6A Silent p.S18S 0.21 TCGA-DD-A3A7-01 1 155823310 155823310 T G GON4L Missense_Mutation p.N88H 0.08 tolerated_low_confidence(0.13) benign(0.04) TCGA-DD-A3A7-01 1 158326144 158326144 C A CD1E Intron 0.04 TCGA-DD-A3A7-01 1 158669566 158669566 G A OR6K2 Silent p.L293L 0.67 TCGA-DD-A3A7-01 1 164789392 164789392 G A PBX1 Missense_Mutation p.A361T 0.16 tolerated(0.24) benign(0.027) TCGA-DD-A3A7-01 1 175375890 175375890 C T TNR 5'UTR 0.46 TCGA-DD-A3A7-01 1 229636533 229636533 A G NUP133 Silent p.S161S 0.22 TCGA-DD-A3A7-01 1 27734780 27734780 T C WASF2 Missense_Mutation p.N467S 0.42 deleterious(0) probably_damaging(0.985) TCGA-DD-A3A7-01 1 32206014 32206014 G A BAI2 Silent p.D641D 0.35 TCGA-DD-A3A7-01 1 52272522 52272522 T C NRD1 Missense_Mutation p.N753S 0.39 tolerated(0.6) benign(0.004) TCGA-DD-A3A7-01 1 65280433 65280433 C T RAVER2 Silent p.S600S 0.31 TCGA-DD-A3A7-01 1 85016134 85016147 TCACTGAGGTACAG GCA CTBS 3'UTR 0.30 TCGA-DD-A3A7-01 1 86814445 86814445 T G ODF2L 3'UTR 0.40 TCGA-DD-A3A7-01 20 34312495 34312495 T C RBM39 Silent p.S228S 0.59 TCGA-DD-A3A7-01 20 42355239 42355239 C G GTSF1L Missense_Mutation p.K32N 0.25 tolerated(0.08) probably_damaging(0.999) TCGA-DD-A3A7-01 20 50048694 50048694 C T NFATC2 Missense_Mutation p.G878R 0.06 tolerated(0.22) probably_damaging(0.982) TCGA-DD-A3A7-01 20 57251326 57251326 C T STX16 Silent p.L319L 0.26 TCGA-DD-A3A7-01 20 60791849 60791849 G C HRH3 Missense_Mutation p.P184R 0.26 deleterious(0.03) probably_damaging(1) TCGA-DD-A3A7-01 20 8698371 8698371 G T PLCB1 Missense_Mutation p.L463F 0.36 deleterious(0) probably_damaging(0.999) TCGA-DD-A3A7-01 21 40627715 40627715 T C BRWD1 Missense_Mutation p.N704S 0.21 tolerated(0.06) probably_damaging(0.952) TCGA-DD-A3A7-01 21 43241421 43241421 A C PRDM15 Splice_Site p.X1053_splice 0.32 TCGA-DD-A3A7-01 21 46021639 46021639 C T KRTAP10-7 Missense_Mutation p.S373F 0.35 deleterious(0.02) unknown(0) TCGA-DD-A3A7-01 22 24564464 24564464 A G CABIN1 Missense_Mutation p.H1911R 0.82 deleterious_low_confidence(0.02) probably_damaging(0.989) TCGA-DD-A3A7-01 22 29724846 29724846 G A AP1B1 Silent p.H938H 0.47 TCGA-DD-A3A7-01 22 30886049 30886049 G A SEC14L4 3'UTR 0.34 TCGA-DD-A3A7-01 22 38363465 38363465 A T POLR2F Intron 0.30 TCGA-DD-A3A7-01 2 160833798 160833798 T G PLA2R1 Silent p.R800R 0.24 TCGA-DD-A3A7-01 2 162799343 162799343 T G SLC4A10 Missense_Mutation p.L680W 0.40 deleterious(0.01) probably_damaging(0.992) TCGA-DD-A3A7-01 2 179560596 179560596 A G TTN Silent p.Y10401Y 0.23 TCGA-DD-A3A7-01 2 196682482 196682482 T C DNAH7 Silent p.Q3121Q 0.31 TCGA-DD-A3A7-01 2 21251239 21251240 - A APOB Frame_Shift_Ins p.I597Yfs*53 0.26 TCGA-DD-A3A7-01 2 220135019 220135019 G T TUBA4B RNA 0.43 TCGA-DD-A3A7-01 2 237233372 237233372 C T IQCA1 Missense_Mutation p.G810S 0.85 tolerated(0.27) benign(0.018) TCGA-DD-A3A7-01 2 71043463 71043463 G A CLEC4F Silent p.G350G 0.39 TCGA-DD-A3A7-01 2 73679628 73679628 C A ALMS1 Missense_Mutation p.H1991N 0.33 possibly_damaging(0.811) TCGA-DD-A3A7-01 2 73679731 73679731 A G ALMS1 Missense_Mutation p.K2025R 0.41 benign(0.398) TCGA-DD-A3A7-01 2 73679798 73679798 T A ALMS1 Nonsense_Mutation p.Y2047* 0.40 TCGA-DD-A3A7-01 2 9508603 9508603 G A ASAP2 Missense_Mutation p.C504Y 0.39 deleterious(0.02) possibly_damaging(0.674) TCGA-DD-A3A7-01 2 9630394 9630394 G A ADAM17 Missense_Mutation p.T796M 0.46 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DD-A3A7-01 2 96657281 96657281 T C ANKRD36C Missense_Mutation p.N59S 0.42 deleterious(0) possibly_damaging(0.631) TCGA-DD-A3A7-01 2 97869996 97869996 G T ANKRD36 Missense_Mutation p.R1019S 0.19 tolerated_low_confidence(0.1) possibly_damaging(0.622) TCGA-DD-A3A7-01 3 111439618 111439618 C G PLCXD2 Intron 0.38 TCGA-DD-A3A7-01 3 135969390 135969390 A G PCCB Missense_Mutation p.Q58R 0.15 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-DD-A3A7-01 3 150459918 150459918 G A SIAH2 3'UTR 0.20 TCGA-DD-A3A7-01 3 156234115 156234115 G A KCNAB1 Missense_Mutation p.G308R 0.49 tolerated(0.09) benign(0.013) TCGA-DD-A3A7-01 3 196051367 196051367 G T TM4SF19 Intron 0.36 TCGA-DD-A3A7-01 3 25833480 25833480 T A OXSM Silent p.G323G 0.31 TCGA-DD-A3A7-01 3 51937031 51937031 A G IQCF1 Silent p.H26H 0.34 TCGA-DD-A3A7-01 4 101331438 101331438 C T EMCN Splice_Site 0.45 TCGA-DD-A3A7-01 4 121737607 121737607 C A PRDM5 Splice_Site p.X289_splice 0.41 TCGA-DD-A3A7-01 4 126412996 126412996 G T FAT4 3'UTR 0.46 TCGA-DD-A3A7-01 4 154649420 154649420 C T RNF175 Missense_Mutation p.V114I 0.49 tolerated(0.58) benign(0.006) TCGA-DD-A3A7-01 4 17841380 17841380 T C NCAPG Missense_Mutation p.Y850H 0.30 deleterious(0.02) possibly_damaging(0.568) TCGA-DD-A3A7-01 4 42965098 42965098 G T GRXCR1 Missense_Mutation p.V192F 0.21 tolerated(0.06) probably_damaging(0.999) TCGA-DD-A3A7-01 4 42965111 42965111 C T GRXCR1 Missense_Mutation p.P196L 0.21 tolerated(0.44) benign(0.234) TCGA-DD-A3A7-01 4 5578055 5578055 C A EVC2 Missense_Mutation p.G1062W 0.12 deleterious(0.03) probably_damaging(0.955) TCGA-DD-A3A7-01 4 81967179 81967179 A G BMP3 Missense_Mutation p.I202V 0.48 tolerated(0.06) benign(0.371) TCGA-DD-A3A7-01 4 982779 982779 T G SLC26A1 Missense_Mutation p.S650R 0.36 deleterious(0) possibly_damaging(0.511) TCGA-DD-A3A7-01 5 101632062 101632062 G T SLCO4C1 5'UTR 0.13 TCGA-DD-A3A7-01 5 102440400 102440400 T C GIN1 Missense_Mutation p.I162V 0.21 tolerated(0.27) benign(0.001) TCGA-DD-A3A7-01 5 115329435 115329435 A G AQPEP Intron 0.17 TCGA-DD-A3A7-01 5 137844022 137844022 T A ETF1 Missense_Mutation p.D429V 0.18 deleterious(0.02) benign(0.002) TCGA-DD-A3A7-01 5 140187339 140187339 A G PCDHA4 Silent p.V189V 0.25 TCGA-DD-A3A7-01 5 140263243 140263243 G A PCDHA13 Missense_Mutation p.V464M 0.12 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-DD-A3A7-01 5 140724102 140724102 C A PCDHGA3 Missense_Mutation p.Q168K 0.23 deleterious_low_confidence(0) possibly_damaging(0.591) TCGA-DD-A3A7-01 5 156727773 156727773 C G CYFIP2 Silent p.A120A 0.67 TCGA-DD-A3A7-01 5 167420042 167420042 C G TENM2 Silent p.P347P 0.44 TCGA-DD-A3A7-01 5 169535372 169535372 C A FOXI1 Silent p.P298P 0.23 TCGA-DD-A3A7-01 5 174151962 174151962 G A MSX2 Silent p.E100E 0.19 TCGA-DD-A3A7-01 5 176308352 176308352 G T HK3 Missense_Mutation p.L860M 0.23 tolerated(0.1) probably_damaging(1) TCGA-DD-A3A7-01 5 176316669 176316669 G A HK3 Missense_Mutation p.P236L 0.13 tolerated(0.54) possibly_damaging(0.57) TCGA-DD-A3A7-01 5 180670901 180670901 A C GNB2L1 5'UTR 0.35 TCGA-DD-A3A7-01 5 31294184 31294184 G A CDH6 Missense_Mutation p.R115K 0.08 tolerated(0.4) benign(0.004) TCGA-DD-A3A7-01 5 78610232 78610232 A C JMY Missense_Mutation p.E739D 0.43 tolerated(0.41) benign(0.004) TCGA-DD-A3A7-01 5 86685321 86685321 A G RASA1 Missense_Mutation p.S1013G 0.25 tolerated(0.12) possibly_damaging(0.883) TCGA-DD-A3A7-01 6 31079722 31079722 G A C6orf15 Silent p.L138L 0.06 TCGA-DD-A3A7-01 6 74161257 74161257 C A MB21D1 Missense_Mutation p.E216D 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-DD-A3A7-01 6 74492373 74492373 A - CD109 Frame_Shift_Del p.N668Mfs*6 0.25 TCGA-DD-A3A7-01 6 76376480 76376481 AA TTTC SENP6 Frame_Shift_Ins p.E349Dfs*23 0.43 TCGA-DD-A3A7-01 6 90562907 90562907 T C CASP8AP2 RNA 0.42 TCGA-DD-A3A7-01 7 139756829 139756829 T C PARP12 Missense_Mutation p.K196R 0.31 deleterious(0.04) probably_damaging(0.936) TCGA-DD-A3A7-01 7 141672569 141672569 A T TAS2R38 Silent p.A307A 0.34 TCGA-DD-A3A7-01 7 148767724 148767724 G T ZNF786 Silent p.R714R 0.38 TCGA-DD-A3A7-01 7 151970850 151970850 G T KMT2C Missense_Mutation p.Q318K 0.06 possibly_damaging(0.84) TCGA-DD-A3A7-01 7 1525069 1525069 C A INTS1 Missense_Mutation p.D1005Y 0.71 deleterious(0) possibly_damaging(0.594) TCGA-DD-A3A7-01 7 23207527 23207527 T C KLHL7 Missense_Mutation p.L417P 0.20 tolerated(0.23) probably_damaging(0.951) TCGA-DD-A3A7-01 7 25267920 25267920 C T NPVF Splice_Site p.X46_splice 0.26 TCGA-DD-A3A7-01 7 45124554 45124554 G A NACAD Missense_Mutation p.P409S 0.26 deleterious(0) probably_damaging(0.994) TCGA-DD-A3A7-01 7 51098538 51098538 G C COBL Missense_Mutation p.T492S 0.25 deleterious(0.02) benign(0.343) TCGA-DD-A3A7-01 7 70228060 70228060 G A AUTS2 Missense_Mutation p.R316Q 0.16 tolerated(0.51) benign(0.002) TCGA-DD-A3A7-01 7 75054388 75054388 A G POM121C Missense_Mutation p.L246P 0.31 deleterious(0) probably_damaging(0.997) TCGA-DD-A3A7-01 7 87780308 87780308 A T ADAM22 Missense_Mutation p.I527F 0.37 deleterious(0.02) benign(0.212) TCGA-DD-A3A7-01 8 118169990 118169990 A G SLC30A8 Missense_Mutation p.Y160C 0.18 deleterious(0) probably_damaging(1) TCGA-DD-A3A7-01 8 123963936 123963936 G A ZHX2 Silent p.E62E 0.19 TCGA-DD-A3A7-01 8 145738331 145738331 A G RECQL4 Missense_Mutation p.L885P 0.22 tolerated(0.27) benign(0.003) TCGA-DD-A3A7-01 9 104123181 104123181 A G BAAT 3'UTR 0.40 TCGA-DD-A3A7-01 9 104302849 104302849 A G RNF20 Silent p.K125K 0.09 TCGA-DD-A3A7-01 9 115805121 115805121 G A ZFP37 Nonsense_Mutation p.R593* 0.37 TCGA-DD-A3A7-01 9 71395649 71395649 C A FAM122A Missense_Mutation p.P190H 0.42 deleterious(0.01) probably_damaging(1) TCGA-DD-A3A7-01 9 84528459 84528459 A T SPATA31D5P RNA 0.27 TCGA-DD-A3A7-01 X 102332620 102332620 G C NXF3 Silent p.T502T 0.80 TCGA-DD-A3A7-01 X 153278076 153278076 T C IRAK1 Missense_Mutation p.I662V 0.26 tolerated(0.1) probably_damaging(0.995) TCGA-DD-A3A7-01 X 17156984 17156984 C T REPS2 Missense_Mutation p.S605F 0.06 tolerated(0.08) possibly_damaging(0.753) TCGA-DD-A3A7-01 X 51075989 51075989 C A NUDT10 Missense_Mutation p.P58T 0.76 tolerated(0.06) probably_damaging(0.999) TCGA-DD-A3A7-01 X 52841663 52841663 G C XAGE5 Splice_Site p.X24_splice 0.07 TCGA-DD-A3A7-01 X 54800575 54800575 T G ITIH6 Missense_Mutation p.E281A 0.10 tolerated(0.29) benign(0.114) TCGA-DD-A3A8-01 10 103310572 103310573 - C BTRC Frame_Shift_Ins p.R594Pfs*27 0.32 TCGA-DD-A3A8-01 10 104416988 104416988 C T TRIM8 Silent p.S511S 0.11 TCGA-DD-A3A8-01 10 112262621 112262621 T C DUSP5 Silent p.Y174Y 0.39 TCGA-DD-A3A8-01 10 119036783 119036783 G C SLC18A2 3'UTR 0.42 TCGA-DD-A3A8-01 10 69299302 69299302 C G CTNNA3 Missense_Mutation p.D140H 0.10 deleterious(0) probably_damaging(0.961) TCGA-DD-A3A8-01 10 85970872 85970872 C A CDHR1 Missense_Mutation p.A479D 0.34 deleterious(0.01) probably_damaging(0.988) TCGA-DD-A3A8-01 11 119206381 119206381 A G RNF26 Silent p.V183V 0.34 TCGA-DD-A3A8-01 11 4621894 4621894 C T TRIM68 Missense_Mutation p.R357Q 0.44 deleterious(0.02) benign(0.173) TCGA-DD-A3A8-01 11 48267566 48267566 A T OR4X2 Nonstop_Mutation p.*304Lext*11 0.06 TCGA-DD-A3A8-01 11 55587787 55587787 A G OR5D18 Missense_Mutation p.K228E 0.36 deleterious(0) possibly_damaging(0.672) TCGA-DD-A3A8-01 11 55595156 55595156 G T OR5L2 Silent p.V154V 0.37 TCGA-DD-A3A8-01 11 57886305 57886305 A T OR9I1 Missense_Mutation p.N204K 0.20 tolerated(0.34) benign(0.019) TCGA-DD-A3A8-01 11 61496465 61496465 C A DAGLA Silent p.L278L 0.12 TCGA-DD-A3A8-01 11 62533971 62533971 G T POLR2G Missense_Mutation p.V171L 0.06 tolerated(0.29) benign(0) TCGA-DD-A3A8-01 11 95712053 95712053 T C MAML2 3'UTR 0.31 TCGA-DD-A3A8-01 12 111951212 111951212 C T ATXN2 Missense_Mutation p.V663I 0.04 benign(0.065) TCGA-DD-A3A8-01 12 21644631 21644631 A G RECQL Silent p.D12D 0.26 TCGA-DD-A3A8-01 12 26568361 26568361 G C ITPR2 Missense_Mutation p.S2394C 0.27 deleterious(0) probably_damaging(0.983) TCGA-DD-A3A8-01 12 2983189 2983189 A T FOXM1 Silent p.L152L 0.03 TCGA-DD-A3A8-01 12 40963562 40963562 A C MUC19 3'UTR 0.45 TCGA-DD-A3A8-01 12 48141580 48141580 T C RAPGEF3 Missense_Mutation p.Q463R 0.09 tolerated(1) benign(0.02) TCGA-DD-A3A8-01 12 50186244 50186244 C A NCKAP5L Silent p.L1259L 0.36 TCGA-DD-A3A8-01 12 66742812 66742812 G T GRIP1 Missense_Mutation p.T1073N 0.11 tolerated_low_confidence(0.09) possibly_damaging(0.533) TCGA-DD-A3A8-01 12 8248266 8248266 A G NECAP1 Missense_Mutation p.N249S 0.09 tolerated(0.83) benign(0) TCGA-DD-A3A8-01 13 111213727 111213727 C A RAB20 Missense_Mutation p.R47L 0.27 deleterious(0.04) possibly_damaging(0.591) TCGA-DD-A3A8-01 13 20426199 20426199 G C ZMYM5 Missense_Mutation p.P41R 0.33 deleterious_low_confidence(0.02) probably_damaging(0.972) TCGA-DD-A3A8-01 13 46730648 46730648 T C LCP1 Missense_Mutation p.D139G 0.11 deleterious(0) probably_damaging(0.982) TCGA-DD-A3A8-01 13 46730649 46730649 C A LCP1 Missense_Mutation p.D139Y 0.11 deleterious(0.01) possibly_damaging(0.895) TCGA-DD-A3A8-01 13 99099038 99099038 A G FARP1 Missense_Mutation p.Y1008C 0.36 deleterious(0) probably_damaging(0.996) TCGA-DD-A3A8-01 14 105414676 105414676 G A AHNAK2 Missense_Mutation p.P2371L 0.33 benign(0.004) TCGA-DD-A3A8-01 14 24654743 24654744 - CACA IPO4 Frame_Shift_Ins p.K401Vfs*136 0.43 TCGA-DD-A3A8-01 14 73576174 73576174 C G RBM25 Missense_Mutation p.P556A 0.26 possibly_damaging(0.539) TCGA-DD-A3A8-01 14 81964803 81964803 C T SEL1L Silent p.Q309Q 0.25 TCGA-DD-A3A8-01 15 100211575 100211575 C A MEF2A Intron 0.37 TCGA-DD-A3A8-01 15 102215816 102215816 T C TARSL2 Missense_Mutation p.N592S 0.26 deleterious(0) benign(0.217) TCGA-DD-A3A8-01 15 26026303 26026303 A G ATP10A Missense_Mutation p.C173R 0.19 deleterious(0.05) possibly_damaging(0.737) TCGA-DD-A3A8-01 15 49659729 49659729 T C FAM227B Missense_Mutation p.Y396C 0.38 deleterious(0) probably_damaging(0.961) TCGA-DD-A3A8-01 15 69695986 69695986 T A PAQR5 Missense_Mutation p.L273H 0.34 deleterious(0.05) possibly_damaging(0.695) TCGA-DD-A3A8-01 16 21469120 21469120 T C snoU13 5'Flank 0.32 TCGA-DD-A3A8-01 16 27080467 27080467 A G C16orf82 RNA 0.25 TCGA-DD-A3A8-01 16 3807292 3807292 T C CREBBP Missense_Mutation p.N1232S 0.36 unknown(0) TCGA-DD-A3A8-01 16 4308230 4308230 G A TFAP4 Silent p.G281G 0.37 TCGA-DD-A3A8-01 16 68845609 68845609 A G CDH1 Silent p.T285T 0.15 TCGA-DD-A3A8-01 16 74372735 74372735 C T RP11-252A24.2 RNA 0.11 TCGA-DD-A3A8-01 17 10429161 10429161 T A MYH2 Missense_Mutation p.E1407V 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-DD-A3A8-01 17 15928399 15928399 T C TTC19 Missense_Mutation p.F249L 0.17 tolerated(0.58) benign(0.012) TCGA-DD-A3A8-01 17 33875781 33875781 G A SLFN14 Missense_Mutation p.A739V 0.41 deleterious(0.02) probably_damaging(0.998) TCGA-DD-A3A8-01 17 57138433 57138433 C A TRIM37 Missense_Mutation p.V327L 0.09 deleterious(0.04) possibly_damaging(0.795) TCGA-DD-A3A8-01 17 58233977 58233977 G A CA4 Missense_Mutation p.V57I 0.28 tolerated(0.1) benign(0.07) TCGA-DD-A3A8-01 17 66920897 66920897 A C ABCA8 Missense_Mutation p.F463V 0.34 tolerated(0.5) benign(0) TCGA-DD-A3A8-01 18 21464744 21464744 A G LAMA3 Missense_Mutation p.T1744A 0.15 benign(0.057) TCGA-DD-A3A8-01 18 44109166 44109166 G T LOXHD1 Silent p.R391R 0.08 TCGA-DD-A3A8-01 18 54358487 54358487 C G WDR7 Missense_Mutation p.P253R 0.10 tolerated(0.53) benign(0.372) TCGA-DD-A3A8-01 19 12637749 12637749 T C ZNF564 Silent p.G391G 0.09 TCGA-DD-A3A8-01 19 18901942 18901942 C T COMP Intron 0.50 TCGA-DD-A3A8-01 19 38867031 38867031 G A PSMD8 Missense_Mutation p.R158H 0.37 tolerated(0.13) benign(0.001) TCGA-DD-A3A8-01 19 4159733 4159733 A G CREB3L3 Missense_Mutation p.N177S 0.43 tolerated(0.47) benign(0.057) TCGA-DD-A3A8-01 19 42866314 42866314 C T MEGF8 Silent p.C1864C 0.37 TCGA-DD-A3A8-01 19 55014011 55014015 AGAAC - LAIR2 5'UTR 0.50 TCGA-DD-A3A8-01 19 58152126 58152126 G T ZNF211 Missense_Mutation p.G156V 0.10 tolerated(1) benign(0) TCGA-DD-A3A8-01 19 58489764 58489767 TCTC - ZNF606 Frame_Shift_Del p.E761Nfs*30 0.31 TCGA-DD-A3A8-01 19 6754208 6754208 A C SH2D3A Intron 0.34 TCGA-DD-A3A8-01 19 9057572 9057572 G T MUC16 Silent p.T9958T 0.41 TCGA-DD-A3A8-01 1 115143496 115143496 G T DENND2C Missense_Mutation p.P634Q 0.28 deleterious(0) probably_damaging(1) TCGA-DD-A3A8-01 1 120266059 120266059 G C PHGDH Silent p.L117L 0.41 TCGA-DD-A3A8-01 1 12567307 12567307 G A VPS13D Intron 0.18 TCGA-DD-A3A8-01 1 150552052 150552052 C T MCL1 5'UTR 0.60 TCGA-DD-A3A8-01 1 156641759 156641759 G T NES Missense_Mutation p.H741N 0.54 deleterious(0.02) benign(0.044) TCGA-DD-A3A8-01 1 16255449 16255449 A G SPEN Missense_Mutation p.N905S 0.23 benign(0.207) TCGA-DD-A3A8-01 1 17354296 17354296 G A SDHB Missense_Mutation p.S163F 0.38 deleterious(0.02) benign(0.037) TCGA-DD-A3A8-01 1 17942680 17942680 A G ARHGEF10L Missense_Mutation p.H273R 0.34 tolerated(0.93) benign(0.027) TCGA-DD-A3A8-01 1 204378958 204378958 T G PPP1R15B Missense_Mutation p.S528R 0.56 tolerated(0.13) benign(0.086) TCGA-DD-A3A8-01 1 206822195 206822195 T A DYRK3 Nonsense_Mutation p.L551* 0.04 TCGA-DD-A3A8-01 1 207103702 207103702 G A PIGR Silent p.T752T 0.51 TCGA-DD-A3A8-01 1 224345489 224345489 G T FBXO28 3'UTR 0.07 TCGA-DD-A3A8-01 1 237054600 237054600 A G MTR Missense_Mutation p.I1059V 0.06 tolerated(0.4) benign(0) TCGA-DD-A3A8-01 1 237586488 237586488 A T RYR2 Silent p.L315L 0.06 TCGA-DD-A3A8-01 1 248308490 248308490 T C OR2M5 Missense_Mutation p.L14P 0.53 deleterious(0) probably_damaging(0.98) TCGA-DD-A3A8-01 1 39906750 39906750 G A MACF1 Missense_Mutation p.A4116T 0.07 probably_damaging(0.999) TCGA-DD-A3A8-01 1 43394606 43394606 C A SLC2A1 Silent p.L357L 0.37 TCGA-DD-A3A8-01 1 54332448 54332448 T C YIPF1 Missense_Mutation p.I211V 0.14 tolerated(0.56) benign(0.075) TCGA-DD-A3A8-01 1 6145274 6145274 G A KCNAB2 Missense_Mutation p.V131I 0.38 tolerated(0.42) benign(0.006) TCGA-DD-A3A8-01 1 67356850 67356850 C T WDR78 Silent p.L210L 0.36 TCGA-DD-A3A8-01 1 68903877 68903877 A G RPE65 Missense_Mutation p.I374T 0.10 deleterious(0.03) benign(0.009) TCGA-DD-A3A8-01 1 89583374 89583374 T G GBP2 Missense_Mutation p.S171R 0.41 tolerated(0.19) benign(0.442) TCGA-DD-A3A8-01 1 97564053 97564053 T C DPYD Missense_Mutation p.T920A 0.24 tolerated(0.69) benign(0.003) TCGA-DD-A3A8-01 20 1471995 1471995 G A SIRPB2 Missense_Mutation p.T4M 0.10 tolerated_low_confidence(0.27) benign(0.001) TCGA-DD-A3A8-01 20 23545454 23545454 T C CST9L 3'UTR 0.46 TCGA-DD-A3A8-01 20 26063603 26063603 A G FAM182A RNA 0.19 TCGA-DD-A3A8-01 20 40049297 40049297 T A CHD6 Missense_Mutation p.H1993L 0.07 tolerated_low_confidence(0.56) benign(0.001) TCGA-DD-A3A8-01 20 62190680 62190680 G A HELZ2 Silent p.L2623L 0.29 TCGA-DD-A3A8-01 22 17071759 17071759 G C CCT8L2 3'UTR 0.31 TCGA-DD-A3A8-01 22 17443765 17443765 G T GAB4 Missense_Mutation p.P528Q 0.40 deleterious(0) benign(0.01) TCGA-DD-A3A8-01 22 31655931 31655931 A G LIMK2 Missense_Mutation p.E119G 0.32 tolerated(0.11) benign(0.09) TCGA-DD-A3A8-01 22 38062901 38062901 C G PDXP 3'UTR 0.35 TCGA-DD-A3A8-01 22 45809347 45809347 G T SMC1B Missense_Mutation p.N34K 0.31 deleterious(0) probably_damaging(1) TCGA-DD-A3A8-01 22 50283351 50283351 C G ZBED4 3'UTR 0.08 TCGA-DD-A3A8-01 22 50485651 50485651 C T TTLL8 Silent p.L149L 0.35 TCGA-DD-A3A8-01 2 10350626 10350626 C T C2orf48 Missense_Mutation p.A128V 0.53 tolerated_low_confidence(1) possibly_damaging(0.695) TCGA-DD-A3A8-01 2 163029733 163029733 T C FAP Splice_Site p.X679_splice 0.31 TCGA-DD-A3A8-01 2 163044766 163044766 C A FAP Missense_Mutation p.G576V 0.38 deleterious(0) probably_damaging(1) TCGA-DD-A3A8-01 2 165947496 165947496 G T SCN3A Missense_Mutation p.P1723T 0.35 deleterious(0.01) benign(0.258) TCGA-DD-A3A8-01 2 179415808 179415808 T A TTN Missense_Mutation p.T30484S 0.48 TCGA-DD-A3A8-01 2 179544137 179544137 T A TTN Missense_Mutation p.E11224V 0.12 TCGA-DD-A3A8-01 2 1926593 1926593 C T MYT1L Silent p.E316E 0.27 TCGA-DD-A3A8-01 2 197786855 197786855 C T PGAP1 Intron 0.33 TCGA-DD-A3A8-01 2 201790570 201790570 T C ORC2 Missense_Mutation p.K379R 0.08 tolerated(1) benign(0.001) TCGA-DD-A3A8-01 2 228846247 228846247 G T SPHKAP 3'UTR 0.42 TCGA-DD-A3A8-01 2 232392880 232392880 C T NMUR1 Silent p.R284R 0.42 TCGA-DD-A3A8-01 2 3504718 3504718 C A ADI1 Missense_Mutation p.R96L 0.51 deleterious(0) probably_damaging(1) TCGA-DD-A3A8-01 2 71591324 71591324 A G ZNF638 Silent p.P553P 0.41 TCGA-DD-A3A8-01 2 84832627 84832627 G A DNAH6 Missense_Mutation p.E1029K 0.30 deleterious(0.01) possibly_damaging(0.549) TCGA-DD-A3A8-01 2 88396264 88396264 G C SMYD1 Silent p.L283L 0.40 TCGA-DD-A3A8-01 2 9552533 9552533 T C ITGB1BP1 Silent p.G51G 0.08 TCGA-DD-A3A8-01 3 101445524 101445524 G T CEP97 Missense_Mutation p.D44Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-DD-A3A8-01 3 136708320 136708320 T C IL20RB Silent p.D148D 0.28 TCGA-DD-A3A8-01 3 142275233 142275233 C G ATR Missense_Mutation p.K690N 0.32 tolerated(0.13) benign(0.046) TCGA-DD-A3A8-01 3 157920990 157920990 G A RSRC1 Silent p.E150E 0.42 TCGA-DD-A3A8-01 3 183959774 183959774 G A VWA5B2 Nonsense_Mutation p.W1226* 0.62 TCGA-DD-A3A8-01 3 186281901 186281901 C A TBCCD1 Missense_Mutation p.W73L 0.39 deleterious(0) probably_damaging(1) TCGA-DD-A3A8-01 3 25668097 25668097 G A TOP2B Silent p.L721L 0.20 TCGA-DD-A3A8-01 3 42687400 42687400 C T NKTR Missense_Mutation p.S1441F 0.03 deleterious_low_confidence(0) unknown(0) TCGA-DD-A3A8-01 3 47037989 47037989 G T NBEAL2 Missense_Mutation p.G794C 0.44 deleterious(0) probably_damaging(1) TCGA-DD-A3A8-01 3 47618819 47618819 C G CSPG5 Missense_Mutation p.G233R 0.32 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-DD-A3A8-01 3 78666831 78666831 C A ROBO1 Missense_Mutation p.E1412D 0.32 tolerated(1) probably_damaging(0.952) TCGA-DD-A3A8-01 4 114375575 114375575 T C CAMK2D 3'UTR 0.31 TCGA-DD-A3A8-01 4 115792014 115792014 C T NDST4 Nonsense_Mutation p.W543* 0.10 TCGA-DD-A3A8-01 4 149002507 149002507 G C NR3C2 Missense_Mutation p.F981L 0.15 deleterious(0) benign(0.153) TCGA-DD-A3A8-01 4 20535249 20535249 A G SLIT2 Silent p.A581A 0.37 TCGA-DD-A3A8-01 4 25156767 25156767 T G SEPSECS Missense_Mutation p.E185A 0.13 tolerated(0.06) benign(0.234) TCGA-DD-A3A8-01 4 30921951 30921951 G A PCDH7 Silent p.T1117T 0.42 TCGA-DD-A3A8-01 4 41988242 41988242 A G DCAF4L1 3'UTR 0.46 TCGA-DD-A3A8-01 4 4248025 4248025 A C TMEM128 Missense_Mutation p.L24R 0.24 deleterious(0) possibly_damaging(0.829) TCGA-DD-A3A8-01 4 44637980 44637980 G A YIPF7 Missense_Mutation p.P104L 0.05 tolerated(0.15) benign(0.008) TCGA-DD-A3A8-01 4 56831901 56831901 A C CEP135 Missense_Mutation p.N307T 0.08 tolerated(0.18) benign(0.006) TCGA-DD-A3A8-01 4 71889378 71889378 A G DCK Silent p.Q168Q 0.10 TCGA-DD-A3A8-01 4 73990739 73990739 T C ANKRD17 Missense_Mutation p.H1128R 0.38 possibly_damaging(0.757) TCGA-DD-A3A8-01 4 79832589 79832589 C T BMP2K Missense_Mutation p.T963M 0.10 deleterious_low_confidence(0.02) unknown(0) TCGA-DD-A3A8-01 4 8621092 8621092 C T CPZ Silent p.A569A 0.38 TCGA-DD-A3A8-01 5 112111380 112111380 C G APC Nonsense_Mutation p.Y159* 0.68 TCGA-DD-A3A8-01 5 140347883 140347883 G A PCDHAC2 Missense_Mutation p.R511K 0.09 tolerated(0.17) benign(0.033) TCGA-DD-A3A8-01 5 140565224 140565224 C T PCDHB16 3'UTR 0.62 TCGA-DD-A3A8-01 5 150632762 150632762 T A GM2A 5'UTR 0.28 TCGA-DD-A3A8-01 5 176070692 176070692 C G EIF4E1B Missense_Mutation p.L85V 0.51 deleterious(0.02) possibly_damaging(0.695) TCGA-DD-A3A8-01 5 180166444 180166444 G A OR2Y1 Silent p.V205V 0.13 TCGA-DD-A3A8-01 5 54281083 54281083 C A ESM1 Missense_Mutation p.G88V 0.20 deleterious(0.03) benign(0.045) TCGA-DD-A3A8-01 5 54922291 54922291 G A SLC38A9 3'UTR 0.21 TCGA-DD-A3A8-01 5 70766253 70766253 G T BDP1 Missense_Mutation p.M317I 0.21 deleterious(0) probably_damaging(0.988) TCGA-DD-A3A8-01 6 138752749 138752749 A G NHSL1 Silent p.T915T 0.22 TCGA-DD-A3A8-01 6 160491064 160491064 C T IGF2R Nonsense_Mutation p.R1473* 0.13 TCGA-DD-A3A8-01 6 160543147 160543147 G A SLC22A1 Silent p.Q60Q 0.19 TCGA-DD-A3A8-01 6 36839559 36839559 T C PPIL1 Missense_Mutation p.N49S 0.51 tolerated(0.06) benign(0.069) TCGA-DD-A3A8-01 6 43471363 43471363 G C TJAP1 Missense_Mutation p.E166D 0.50 tolerated(0.11) probably_damaging(0.995) TCGA-DD-A3A8-01 6 64431532 64431532 G T EYS Missense_Mutation p.L2799I 0.11 tolerated(0.09) possibly_damaging(0.751) TCGA-DD-A3A8-01 6 65767615 65767615 G A EYS Nonsense_Mutation p.Q677* 0.28 TCGA-DD-A3A8-01 6 87967391 87967391 G A ZNF292 Silent p.G1348G 0.60 TCGA-DD-A3A8-01 7 100245133 100245160 GGGGGCACCCTCCCGGACAGGCTCCTGT - ACTL6B Splice_Site p.X224_splice 0.19 TCGA-DD-A3A8-01 7 124386785 124386785 G C GPR37 Missense_Mutation p.P546A 0.11 deleterious(0) probably_damaging(1) TCGA-DD-A3A8-01 7 128694938 128694938 G A TNPO3 5'UTR 0.24 TCGA-DD-A3A8-01 7 44609640 44609640 A T DDX56 Silent p.P366P 0.31 TCGA-DD-A3A8-01 7 73008143 73008144 - A MLXIPL 3'UTR 0.14 TCGA-DD-A3A8-01 7 82508658 82508658 A G PCLO Missense_Mutation p.M4550T 0.42 unknown(0) TCGA-DD-A3A8-01 7 82582751 82582751 G T PCLO Missense_Mutation p.S2506R 0.15 unknown(0) TCGA-DD-A3A8-01 7 91936908 91936908 G C ANKIB1 Missense_Mutation p.D142H 0.44 deleterious(0) probably_damaging(0.999) TCGA-DD-A3A8-01 7 93633633 93633633 A G BET1 5'UTR 0.32 TCGA-DD-A3A8-01 8 124382175 124382175 C G ATAD2 Missense_Mutation p.D273H 0.06 deleterious(0.02) benign(0.303) TCGA-DD-A3A8-01 8 142441034 142441034 C A PTP4A3 Missense_Mutation p.R138S 0.23 deleterious(0.02) possibly_damaging(0.874) TCGA-DD-A3A8-01 8 75233175 75233175 G T JPH1 Missense_Mutation p.D116E 0.14 deleterious(0) probably_damaging(0.986) TCGA-DD-A3A8-01 8 77895811 77895811 C T PEX2 Missense_Mutation p.E202K 0.22 deleterious(0) probably_damaging(0.999) TCGA-DD-A3A8-01 8 95272587 95272587 T C GEM Missense_Mutation p.T49A 0.07 tolerated(0.81) benign(0) TCGA-DD-A3A8-01 9 100235830 100235830 C T TDRD7 Silent p.L667L 0.35 TCGA-DD-A3A8-01 9 127115964 127115964 T C PSMB7 Silent p.K249K 0.06 TCGA-DD-A3A8-01 9 139566777 139566777 G A EGFL7 3'UTR 0.55 TCGA-DD-A3A8-01 9 14784488 14784488 T C FREM1 Missense_Mutation p.Q1441R 0.26 tolerated(0.14) benign(0.013) TCGA-DD-A3A8-01 9 33548483 33548483 A G ANKRD18B Missense_Mutation p.D504G 0.21 deleterious(0.03) probably_damaging(0.978) TCGA-DD-A3A8-01 9 70917828 70917828 C G FOXD4L3 5'UTR 0.22 TCGA-DD-A3A8-01 9 79320970 79320970 C T PRUNE2 Missense_Mutation p.A2074T 0.20 tolerated(0.1) benign(0.021) TCGA-DD-A3A8-01 9 95147921 95147921 G C OGN Missense_Mutation p.P293R 0.38 deleterious(0) probably_damaging(1) TCGA-DD-A3A8-01 X 149905792 149905792 G T MTMR1 Missense_Mutation p.G441C 0.81 deleterious(0) probably_damaging(1) TCGA-DD-A3A8-01 X 152085856 152085856 C T ZNF185 Silent p.S97S 0.27 TCGA-DD-A3A8-01 X 1752180 1752180 G A ASMT Missense_Mutation p.E262K 0.22 tolerated(0.13) benign(0.069) TCGA-DD-A3A8-01 X 216084 216084 A G PLCXD1 3'UTR 0.46 TCGA-DD-A3A8-01 X 49062154 49062154 G T CACNA1F Missense_Mutation p.F1875L 0.58 tolerated_low_confidence(0.43) benign(0.001) TCGA-DD-A3A8-01 X 71788678 71788678 G C HDAC8 Missense_Mutation p.A74G 0.59 tolerated(0.22) benign(0.002) TCGA-DD-A3A8-01 X 75003313 75003313 C A MAGEE2 3'UTR 0.26 TCGA-DD-A3A9-01 10 100004016 100004016 A T R3HCC1L 3'UTR 0.12 TCGA-DD-A3A9-01 10 104687174 104687174 A T CNNM2 Intron 0.11 TCGA-DD-A3A9-01 10 105763103 105763103 A G SLK Missense_Mutation p.K723E 0.26 tolerated(0.11) benign(0.016) TCGA-DD-A3A9-01 10 105952057 105952057 A G WDR96 Silent p.Y482Y 0.26 TCGA-DD-A3A9-01 10 125426544 125426544 C T GPR26 Silent p.D207D 0.04 TCGA-DD-A3A9-01 10 127434413 127434413 A G EDRF1 Missense_Mutation p.M910V 0.30 deleterious(0) probably_damaging(0.994) TCGA-DD-A3A9-01 10 135038187 135038187 G A KNDC1 Silent p.Q1681Q 0.12 TCGA-DD-A3A9-01 10 135179489 135179489 C G ECHS1 Missense_Mutation p.V244L 0.18 deleterious(0.01) benign(0.295) TCGA-DD-A3A9-01 10 16967302 16967302 A T CUBN Missense_Mutation p.F2195Y 0.16 deleterious(0) probably_damaging(0.992) TCGA-DD-A3A9-01 10 25887663 25887663 G T GPR158 Missense_Mutation p.M1036I 0.28 tolerated(0.18) benign(0.007) TCGA-DD-A3A9-01 10 25888209 25888209 C A GPR158 3'UTR 0.28 TCGA-DD-A3A9-01 10 27486370 27486370 T A ACBD5 Nonsense_Mutation p.K523* 0.40 TCGA-DD-A3A9-01 10 37507997 37507997 C T ANKRD30A Silent p.A1063A 0.32 TCGA-DD-A3A9-01 10 55600110 55600110 T C PCDH15 Missense_Mutation p.N1318S 0.16 deleterious(0.03) probably_damaging(0.984) TCGA-DD-A3A9-01 10 7684011 7684011 T A ITIH5 Missense_Mutation p.I60F 0.15 deleterious(0) probably_damaging(0.962) TCGA-DD-A3A9-01 10 85972935 85972935 C - CDHR1 Frame_Shift_Del p.H625Tfs*30 0.23 TCGA-DD-A3A9-01 10 86131874 86131874 G C CCSER2 Missense_Mutation p.A356P 0.17 tolerated(0.16) benign(0.23) TCGA-DD-A3A9-01 10 88419162 88419162 T C OPN4 Missense_Mutation p.L257P 0.17 deleterious(0) probably_damaging(0.968) TCGA-DD-A3A9-01 10 88649933 88649933 G A BMPR1A Missense_Mutation p.C61Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-DD-A3A9-01 10 91066441 91066441 C T IFIT2 Missense_Mutation p.A243V 0.09 tolerated(0.11) benign(0.091) TCGA-DD-A3A9-01 10 95719293 95719293 C T PIPSL RNA 0.12 TCGA-DD-A3A9-01 10 95791760 95791760 G A PLCE1 Silent p.K319K 0.09 TCGA-DD-A3A9-01 10 97626020 97626020 T C ENTPD1 Silent p.P483P 0.13 TCGA-DD-A3A9-01 10 98764566 98764566 C T SLIT1 Silent p.E1198E 0.18 TCGA-DD-A3A9-01 11 102662135 102662135 C T MMP1 Silent p.K375K 0.15 TCGA-DD-A3A9-01 11 1081136 1081136 G A MUC2 Missense_Mutation p.V478M 0.19 probably_damaging(0.998) TCGA-DD-A3A9-01 11 111740961 111740961 C T ALG9 5'UTR 0.16 TCGA-DD-A3A9-01 11 118263565 118263565 C T UBE4A Missense_Mutation p.S1017F 0.57 deleterious(0) probably_damaging(1) TCGA-DD-A3A9-01 11 118374789 118374789 G A KMT2A Missense_Mutation p.E2728K 0.19 probably_damaging(0.991) TCGA-DD-A3A9-01 11 121986461 121986461 G T BLID Missense_Mutation p.P57H 0.15 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-DD-A3A9-01 11 122659819 122659819 C T UBASH3B Silent p.V261V 0.42 TCGA-DD-A3A9-01 11 124016605 124016605 A T VWA5A Missense_Mutation p.I772F 0.14 deleterious(0.03) benign(0.321) TCGA-DD-A3A9-01 11 132306092 132306092 T C OPCML Silent p.K275K 0.14 TCGA-DD-A3A9-01 11 1629511 1629511 G A KRTAP5-3 Silent p.C35C 0.24 TCGA-DD-A3A9-01 11 17449458 17449458 T A ABCC8 Missense_Mutation p.D691V 0.12 deleterious(0) benign(0.101) TCGA-DD-A3A9-01 11 1955022 1955022 C A TNNT3 Silent p.A81A 0.11 TCGA-DD-A3A9-01 11 198506 198506 C A ODF3 Missense_Mutation p.T152N 0.14 deleterious(0.01) possibly_damaging(0.771) TCGA-DD-A3A9-01 11 2170519 2170519 T A INS-IGF2 Missense_Mutation p.T82S 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.801) TCGA-DD-A3A9-01 11 2424378 2424378 A C TSSC4 Missense_Mutation p.E172A 0.07 deleterious(0.02) possibly_damaging(0.864) TCGA-DD-A3A9-01 11 27384586 27384586 C A CCDC34 Silent p.S52S 0.15 TCGA-DD-A3A9-01 11 35287013 35287013 T A SLC1A2 Intron 0.37 TCGA-DD-A3A9-01 11 36296268 36296268 C T COMMD9 Missense_Mutation p.V171M 0.50 tolerated(0.37) benign(0.04) TCGA-DD-A3A9-01 11 36596385 36596385 A T RAG1 Nonsense_Mutation p.K511* 0.19 TCGA-DD-A3A9-01 11 36614459 36614459 G T RAG2 Nonsense_Mutation p.C420* 0.14 TCGA-DD-A3A9-01 11 47315515 47315515 G A MADD Missense_Mutation p.S1166N 0.23 tolerated(0.06) benign(0.014) TCGA-DD-A3A9-01 11 47376978 47376978 G C SPI1 Missense_Mutation p.H206D 0.16 deleterious(0.01) probably_damaging(0.951) TCGA-DD-A3A9-01 11 51412084 51412084 G A OR4A5 Silent p.F104F 0.14 TCGA-DD-A3A9-01 11 55587463 55587463 G A OR5D18 Missense_Mutation p.A120T 0.20 deleterious(0) probably_damaging(0.957) TCGA-DD-A3A9-01 11 611702 611702 C A PHRF1 Missense_Mutation p.D1624E 0.10 tolerated(0.58) possibly_damaging(0.866) TCGA-DD-A3A9-01 11 62290481 62290481 T C AHNAK Missense_Mutation p.K3803R 0.18 probably_damaging(0.998) TCGA-DD-A3A9-01 11 64030000 64030000 G A PLCB3 Silent p.V720V 0.12 TCGA-DD-A3A9-01 11 65365896 65365896 T C MAP3K11 Missense_Mutation p.T804A 0.11 tolerated_low_confidence(0.09) possibly_damaging(0.899) TCGA-DD-A3A9-01 11 6579426 6579426 T C DNHD1 Silent p.P2967P 0.49 TCGA-DD-A3A9-01 11 66392861 66392861 G A RBM14 Missense_Mutation p.G505E 0.16 deleterious(0) unknown(0) TCGA-DD-A3A9-01 11 67434460 67434460 G A ALDH3B2 5'UTR 0.19 TCGA-DD-A3A9-01 11 6867579 6867579 T C OR10A5 Silent p.I222I 0.11 TCGA-DD-A3A9-01 11 7112044 7112044 A G RBMXL2 3'UTR 0.21 TCGA-DD-A3A9-01 11 71903312 71903312 A C FOLR1 Missense_Mutation p.E32A 0.13 tolerated(0.06) benign(0.101) TCGA-DD-A3A9-01 11 7334640 7334640 G A SYT9 Missense_Mutation p.R171Q 0.19 tolerated(0.39) probably_damaging(0.961) TCGA-DD-A3A9-01 11 84634119 84634119 A T DLG2 Intron 0.12 TCGA-DD-A3A9-01 11 86782616 86782616 G A TMEM135 Silent p.L107L 0.13 TCGA-DD-A3A9-01 11 89896533 89896533 C G NAALAD2 Missense_Mutation p.D377E 0.11 deleterious(0) probably_damaging(1) TCGA-DD-A3A9-01 12 10339065 10339065 T C TMEM52B Missense_Mutation p.S42P 0.16 deleterious(0.02) possibly_damaging(0.836) TCGA-DD-A3A9-01 12 108686719 108686719 A T CMKLR1 Missense_Mutation p.D7E 0.05 tolerated(0.41) benign(0.004) TCGA-DD-A3A9-01 12 110230527 110230527 C A TRPV4 Missense_Mutation p.G585V 0.11 deleterious(0) probably_damaging(1) TCGA-DD-A3A9-01 12 114296692 114296692 C T RBM19 Silent p.G856G 0.37 TCGA-DD-A3A9-01 12 123110815 123110815 A G KNTC1 3'UTR 0.14 TCGA-DD-A3A9-01 12 123338690 123338690 C T HIP1R Silent p.L226L 0.10 TCGA-DD-A3A9-01 12 129559205 129559205 C T TMEM132D Missense_Mutation p.G839R 0.31 tolerated(0.16) possibly_damaging(0.578) TCGA-DD-A3A9-01 12 129559407 129559407 C G TMEM132D Missense_Mutation p.M771I 0.05 deleterious(0.03) possibly_damaging(0.557) TCGA-DD-A3A9-01 12 14706133 14706133 G C PLBD1 Missense_Mutation p.T110S 0.09 tolerated(0.05) probably_damaging(0.999) TCGA-DD-A3A9-01 12 15034986 15034986 T C MGP 3'UTR 0.28 TCGA-DD-A3A9-01 12 15652426 15652426 T A PTPRO Missense_Mutation p.Y187N 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DD-A3A9-01 12 266236 266236 G A IQSEC3 Silent p.E733E 0.27 TCGA-DD-A3A9-01 12 32260378 32260378 G A BICD1 Missense_Mutation p.G38E 0.09 deleterious(0) probably_damaging(1) TCGA-DD-A3A9-01 12 40959489 40959489 A G MUC19 3'UTR 0.39 TCGA-DD-A3A9-01 12 49578875 49578875 A G TUBA1A Missense_Mutation p.M425T 0.26 deleterious_low_confidence(0.04) benign(0.174) TCGA-DD-A3A9-01 12 53012109 53012109 C T KRT73 Nonsense_Mutation p.W67* 0.08 TCGA-DD-A3A9-01 12 66704296 66704296 A T HELB Nonsense_Mutation p.K530* 0.12 TCGA-DD-A3A9-01 12 7242776 7242776 C G C1R Silent p.P99P 0.17 TCGA-DD-A3A9-01 12 72936136 72936136 A G TRHDE Silent p.Q551Q 0.21 TCGA-DD-A3A9-01 12 81014030 81014030 A G PTPRQ Silent p.T1825T 0.29 TCGA-DD-A3A9-01 12 9258835 9258835 C T A2M Silent p.G367G 0.11 TCGA-DD-A3A9-01 12 95422248 95422248 T C NR2C1 Silent p.L482L 0.08 TCGA-DD-A3A9-01 13 115092186 115092186 T A CHAMP1 3'UTR 0.38 TCGA-DD-A3A9-01 13 19753559 19753559 T C TUBA3C Missense_Mutation p.N50D 0.26 tolerated_low_confidence(0.08) benign(0.144) TCGA-DD-A3A9-01 13 25448375 25448375 T A RNF17 Missense_Mutation p.L1524Q 0.20 deleterious(0) probably_damaging(0.995) TCGA-DD-A3A9-01 13 25743926 25743926 C G AMER2 Missense_Mutation p.S611T 0.23 deleterious(0.03) probably_damaging(0.991) TCGA-DD-A3A9-01 13 74387348 74387348 G T KLF12 Silent p.T249T 0.22 TCGA-DD-A3A9-01 14 101350875 101350875 G A RTL1 Missense_Mutation p.P84L 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.873) TCGA-DD-A3A9-01 14 105414859 105414859 T C AHNAK2 Missense_Mutation p.D2310G 0.23 benign(0.124) TCGA-DD-A3A9-01 14 58690343 58690343 G A ACTR10 Missense_Mutation p.R213H 0.31 deleterious(0) probably_damaging(0.952) TCGA-DD-A3A9-01 14 60074189 60074189 C T RTN1 Missense_Mutation p.R596Q 0.17 deleterious(0.01) probably_damaging(1) TCGA-DD-A3A9-01 14 68944554 68944554 T C RAD51B Intron 0.23 TCGA-DD-A3A9-01 14 70713231 70713231 A G ADAM21P1 RNA 0.23 TCGA-DD-A3A9-01 14 71206814 71206814 G C MAP3K9 Missense_Mutation p.S545R 0.17 tolerated(0.15) benign(0.146) TCGA-DD-A3A9-01 14 73721644 73721644 G A PAPLN Silent p.P488P 0.36 TCGA-DD-A3A9-01 14 77948666 77948666 G A ISM2 Silent p.Y324Y 0.12 TCGA-DD-A3A9-01 14 81955626 81955626 C A SEL1L Missense_Mutation p.M455I 0.14 tolerated(0.18) benign(0.285) TCGA-DD-A3A9-01 14 89202777 89202777 T A EML5 Missense_Mutation p.E327V 0.21 deleterious(0) probably_damaging(0.962) TCGA-DD-A3A9-01 14 90651207 90651207 C T KCNK13 Silent p.L363L 0.16 TCGA-DD-A3A9-01 14 91883179 91883179 T C CCDC88C Missense_Mutation p.K22E 0.13 deleterious(0) probably_damaging(0.984) TCGA-DD-A3A9-01 15 101592136 101592136 T A LRRK1 Silent p.P1220P 0.08 TCGA-DD-A3A9-01 15 20657690 20657690 C T HERC2P3 RNA 0.10 TCGA-DD-A3A9-01 15 23335653 23335653 A G HERC2P2 RNA 0.12 TCGA-DD-A3A9-01 15 24921553 24921553 T C NPAP1 Missense_Mutation p.L180P 0.16 tolerated(0.2) possibly_damaging(0.78) TCGA-DD-A3A9-01 15 24927258 24927258 C T NPAP1 3'UTR 0.29 TCGA-DD-A3A9-01 15 26793135 26793135 T C GABRB3 Silent p.R409R 0.20 TCGA-DD-A3A9-01 15 28443786 28443786 C A HERC2 Missense_Mutation p.G2616C 0.19 probably_damaging(0.911) TCGA-DD-A3A9-01 15 28443787 28443787 C A HERC2 Silent p.G2615G 0.19 TCGA-DD-A3A9-01 15 34356472 34356472 A G CHRM5 Silent p.K518K 0.10 TCGA-DD-A3A9-01 15 40920293 40920293 A G CASC5 Missense_Mutation p.D1827G 0.18 tolerated(0.11) benign(0.228) TCGA-DD-A3A9-01 15 41137074 41137074 C T SPINT1 Missense_Mutation p.R108C 0.13 deleterious(0.03) possibly_damaging(0.738) TCGA-DD-A3A9-01 15 45332630 45332630 G A SORD Missense_Mutation p.G31S 0.13 tolerated(0.1) benign(0.029) TCGA-DD-A3A9-01 15 48719788 48719788 G A FBN1 Nonsense_Mutation p.R2394* 0.09 TCGA-DD-A3A9-01 15 55783381 55783381 T A DYX1C1 Silent p.T115T 0.17 TCGA-DD-A3A9-01 15 56394441 56394441 T C RFX7 Missense_Mutation p.S177G 0.19 deleterious(0.03) benign(0.204) TCGA-DD-A3A9-01 15 62219327 62219327 G A VPS13C Missense_Mutation p.P2160L 0.14 deleterious(0) possibly_damaging(0.611) TCGA-DD-A3A9-01 15 65959791 65959791 G C DENND4A Nonsense_Mutation p.S1745* 0.15 TCGA-DD-A3A9-01 15 72643535 72643535 T A HEXA Missense_Mutation p.H204L 0.14 deleterious(0) probably_damaging(1) TCGA-DD-A3A9-01 15 90193163 90193163 A G KIF7 Missense_Mutation p.L113P 0.18 tolerated(0.29) benign(0.173) TCGA-DD-A3A9-01 15 91043276 91043276 A C IQGAP1 Missense_Mutation p.D1637A 0.05 deleterious(0) benign(0.413) TCGA-DD-A3A9-01 15 93486285 93486285 G A CHD2 Missense_Mutation p.E347K 0.10 deleterious(0.01) benign(0.409) TCGA-DD-A3A9-01 15 99451929 99451929 C T IGF1R Silent p.Y421Y 0.08 TCGA-DD-A3A9-01 16 24202416 24202416 G - PRKCB Frame_Shift_Del p.M576Ifs*65 0.23 TCGA-DD-A3A9-01 16 27506737 27506737 G A GTF3C1 Silent p.Y809Y 0.21 TCGA-DD-A3A9-01 16 31390892 31390892 C T ITGAX Silent p.H931H 0.21 TCGA-DD-A3A9-01 16 56872968 56872968 A T NUP93 Missense_Mutation p.D708V 0.23 tolerated(0.27) benign(0.087) TCGA-DD-A3A9-01 16 71913830 71913830 G T ZNF821 Missense_Mutation p.T7K 0.19 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-DD-A3A9-01 16 74729411 74729411 C T MLKL Missense_Mutation p.R82K 0.18 tolerated(1) benign(0) TCGA-DD-A3A9-01 16 76513378 76513378 A G CNTNAP4 Missense_Mutation p.I536V 0.14 tolerated(0.15) benign(0.007) TCGA-DD-A3A9-01 16 77398168 77398168 T C ADAMTS18 Missense_Mutation p.T297A 0.23 deleterious(0) probably_damaging(0.996) TCGA-DD-A3A9-01 16 77859180 77859180 C T VAT1L Missense_Mutation p.A134V 0.18 tolerated(0.1) probably_damaging(0.99) TCGA-DD-A3A9-01 16 88643755 88643755 A C ZC3H18 Missense_Mutation p.E75A 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-DD-A3A9-01 17 12666558 12666558 A G MYOCD Missense_Mutation p.E853G 0.64 tolerated(0.5) benign(0.061) TCGA-DD-A3A9-01 17 15878262 15878262 A G ADORA2B Missense_Mutation p.Y202C 0.63 deleterious(0) probably_damaging(0.992) TCGA-DD-A3A9-01 17 18397818 18397818 G A LGALS9C 3'UTR 0.77 TCGA-DD-A3A9-01 17 37186316 37186316 C T CTD-2206N4.2 5'Flank 0.33 TCGA-DD-A3A9-01 17 37321340 37321340 G A ARL5C Silent p.L33L 0.11 TCGA-DD-A3A9-01 17 38711491 38711491 T C CCR7 Missense_Mutation p.T214A 0.13 tolerated(0.44) benign(0.021) TCGA-DD-A3A9-01 17 38938637 38938637 C T KRT27 Missense_Mutation p.G37S 0.08 tolerated(0.26) benign(0.011) TCGA-DD-A3A9-01 17 4576104 4576104 C T PELP1 Missense_Mutation p.E728K 0.42 benign(0.292) TCGA-DD-A3A9-01 17 4576404 4576404 C T PELP1 Missense_Mutation p.A628T 0.31 possibly_damaging(0.815) TCGA-DD-A3A9-01 17 4837033 4837033 C A GP1BA Silent p.S378S 0.47 TCGA-DD-A3A9-01 17 61573828 61573828 C T ACE Silent p.L1152L 0.61 TCGA-DD-A3A9-01 17 66040550 66040550 G T KPNA2 Missense_Mutation p.M426I 0.12 tolerated(0.32) benign(0.003) TCGA-DD-A3A9-01 17 67031425 67031425 G A ABCA9 Missense_Mutation p.L364F 0.12 tolerated(0.24) benign(0.12) TCGA-DD-A3A9-01 17 68171825 68171825 C T KCNJ2 Silent p.G215G 0.14 TCGA-DD-A3A9-01 17 72285791 72285791 A G DNAI2 Missense_Mutation p.R176G 0.67 tolerated(0.15) benign(0.004) TCGA-DD-A3A9-01 17 74569415 74569415 C T ST6GALNAC2 Missense_Mutation p.G131D 0.19 benign(0.013) TCGA-DD-A3A9-01 17 74774280 74774280 C A MFSD11 Missense_Mutation p.A399E 0.11 deleterious(0) possibly_damaging(0.831) TCGA-DD-A3A9-01 17 7720031 7720031 C T DNAH2 Missense_Mutation p.A3291V 0.31 benign(0.014) TCGA-DD-A3A9-01 17 79424536 79424536 G T RP11-1055B8.7 Silent p.V1653V 0.18 TCGA-DD-A3A9-01 17 9729529 9729529 G A GLP2R Missense_Mutation p.R50K 0.33 tolerated(0.09) benign(0.003) TCGA-DD-A3A9-01 18 14772175 14772175 T C ANKRD30B Missense_Mutation p.I426T 0.33 tolerated(1) benign(0.009) TCGA-DD-A3A9-01 18 29511372 29511372 T A TRAPPC8 Missense_Mutation p.D91V 0.14 deleterious(0) possibly_damaging(0.588) TCGA-DD-A3A9-01 18 44560523 44560523 A T TCEB3B Missense_Mutation p.D371E 0.16 tolerated(0.43) benign(0.002) TCGA-DD-A3A9-01 18 58039945 58039945 A T MC4R 5'UTR 0.22 TCGA-DD-A3A9-01 18 73001714 73001714 T G TSHZ1 3'UTR 0.23 TCGA-DD-A3A9-01 18 9254383 9254383 A G ANKRD12 Missense_Mutation p.K373R 0.10 deleterious(0.04) benign(0.049) TCGA-DD-A3A9-01 19 11888524 11888524 G A ZNF441 Silent p.Q34Q 0.09 TCGA-DD-A3A9-01 19 11978948 11978948 A G ZNF439 Missense_Mutation p.E355G 0.10 deleterious(0.03) possibly_damaging(0.532) TCGA-DD-A3A9-01 19 15052324 15052324 A T OR7C2 Missense_Mutation p.E8D 0.10 tolerated_low_confidence(0.51) benign(0.045) TCGA-DD-A3A9-01 19 1775332 1775332 T C ONECUT3 Missense_Mutation p.V458A 0.15 deleterious(0) probably_damaging(1) TCGA-DD-A3A9-01 19 18183075 18183075 A G IL12RB1 Missense_Mutation p.S290P 0.11 deleterious(0) probably_damaging(0.994) TCGA-DD-A3A9-01 19 18576653 18576653 C T ELL Missense_Mutation p.D87N 0.10 tolerated(0.05) possibly_damaging(0.74) TCGA-DD-A3A9-01 19 21299624 21299624 T C ZNF714 Missense_Mutation p.S52P 0.56 deleterious(0.02) benign(0.086) TCGA-DD-A3A9-01 19 22605105 22605105 C T ZNF98 5'UTR 0.10 TCGA-DD-A3A9-01 19 33439208 33439208 C T CEP89 Missense_Mutation p.G187S 0.13 tolerated(0.69) benign(0.177) TCGA-DD-A3A9-01 19 3462826 3462826 A G NFIC 3'UTR 0.15 TCGA-DD-A3A9-01 19 37935834 37935834 T A ZNF569 5'UTR 0.06 TCGA-DD-A3A9-01 19 38127120 38127120 T C ZFP30 Missense_Mutation p.R108G 0.27 tolerated(0.28) benign(0.016) TCGA-DD-A3A9-01 19 38382236 38382236 G A WDR87 Missense_Mutation p.P1078L 0.15 benign(0.153) TCGA-DD-A3A9-01 19 39980382 39980382 G A TIMM50 Silent p.E431E 0.13 TCGA-DD-A3A9-01 19 41131776 41131776 G C LTBP4 Missense_Mutation p.V1349L 0.17 tolerated(0.26) possibly_damaging(0.719) TCGA-DD-A3A9-01 19 42351496 42351496 C A DMRTC2 5'UTR 0.16 TCGA-DD-A3A9-01 19 42859978 42859978 G A MEGF8 Missense_Mutation p.A1338T 0.15 tolerated(0.53) possibly_damaging(0.503) TCGA-DD-A3A9-01 19 44536345 44536345 A G ZNF222 Missense_Mutation p.Y213C 0.12 deleterious(0.05) benign(0.035) TCGA-DD-A3A9-01 19 45543521 45543521 C T CLASRP Silent p.V17V 0.10 TCGA-DD-A3A9-01 19 4793795 4793795 G A FEM1A Silent p.A643A 0.15 TCGA-DD-A3A9-01 19 48879425 48879425 G A SYNGR4 Missense_Mutation p.M185I 0.14 tolerated(0.07) benign(0.001) TCGA-DD-A3A9-01 19 50464033 50464033 C T SIGLEC11 Missense_Mutation p.S79N 0.12 tolerated(1) benign(0) TCGA-DD-A3A9-01 19 51506441 51506441 T G KLK9 Silent p.R227R 0.11 TCGA-DD-A3A9-01 19 53014631 53014631 C T ZNF578 Missense_Mutation p.H333Y 0.16 deleterious(0) possibly_damaging(0.494) TCGA-DD-A3A9-01 19 53207407 53207407 C T ZNF611 3'UTR 0.09 TCGA-DD-A3A9-01 19 53343329 53343329 A C ZNF468 3'UTR 0.08 TCGA-DD-A3A9-01 19 53960271 53960271 G C ZNF761 RNA 0.11 TCGA-DD-A3A9-01 19 54200818 54200818 T A MIR525 RNA 0.09 TCGA-DD-A3A9-01 19 54705416 54705416 C - RPS9 Frame_Shift_Del p.R54Afs*8 0.22 TCGA-DD-A3A9-01 19 55453072 55453072 G A NLRP7 Missense_Mutation p.S3L 0.11 tolerated(0.15) benign(0.001) TCGA-DD-A3A9-01 19 55871144 55871144 G A FAM71E2 Silent p.P364P 0.10 TCGA-DD-A3A9-01 19 56369470 56369470 G T NLRP4 Missense_Mutation p.Q237H 0.17 tolerated(0.09) benign(0.043) TCGA-DD-A3A9-01 19 5766134 5766134 C G CATSPERD Silent p.G509G 0.13 TCGA-DD-A3A9-01 19 58419865 58419865 T A ZNF417 3'UTR 0.17 TCGA-DD-A3A9-01 19 58578913 58578913 A T ZNF135 Missense_Mutation p.Y378F 0.14 tolerated(0.21) probably_damaging(0.994) TCGA-DD-A3A9-01 19 9049896 9049896 T C MUC16 Missense_Mutation p.R10579G 0.18 benign(0.003) TCGA-DD-A3A9-01 19 9056445 9056445 G A MUC16 Missense_Mutation p.S10334F 0.12 benign(0.293) TCGA-DD-A3A9-01 19 9641667 9641667 T C ZNF426 Missense_Mutation p.I134M 0.10 tolerated(0.25) benign(0.007) TCGA-DD-A3A9-01 1 118558673 118558673 T G SPAG17 Missense_Mutation p.N1401T 0.22 tolerated(0.39) benign(0.025) TCGA-DD-A3A9-01 1 12919960 12919960 C T PRAMEF2 Missense_Mutation p.L234F 0.23 deleterious(0) possibly_damaging(0.676) TCGA-DD-A3A9-01 1 144931551 144931551 T C PDE4DIP Intron 0.05 TCGA-DD-A3A9-01 1 146634090 146634090 T C PRKAB2 Missense_Mutation p.R201G 0.09 deleterious(0.03) benign(0.419) TCGA-DD-A3A9-01 1 150054035 150054035 A G VPS45 Missense_Mutation p.K298E 0.08 tolerated(0.09) benign(0.216) TCGA-DD-A3A9-01 1 150483832 150483832 A T ECM1 Intron 0.10 TCGA-DD-A3A9-01 1 150915464 150915464 T C SETDB1 Silent p.D270D 0.09 TCGA-DD-A3A9-01 1 152286777 152286777 G A FLG Silent p.D195D 0.10 TCGA-DD-A3A9-01 1 152327323 152327323 C G FLG2 Missense_Mutation p.G980A 0.08 unknown(0) TCGA-DD-A3A9-01 1 153653162 153653162 C T NPR1 Missense_Mutation p.R303C 0.20 deleterious(0) possibly_damaging(0.853) TCGA-DD-A3A9-01 1 153785891 153785891 A G GATAD2B Silent p.F418F 0.07 TCGA-DD-A3A9-01 1 154543704 154543704 C T CHRNB2 Silent p.A135A 0.10 TCGA-DD-A3A9-01 1 155145067 155145067 C A RP11-201K10.3 Missense_Mutation p.D170Y 0.06 unknown(0) TCGA-DD-A3A9-01 1 156639411 156639411 C T NES Missense_Mutation p.M1523I 0.20 deleterious(0.03) benign(0.005) TCGA-DD-A3A9-01 1 156641300 156641300 A T NES Missense_Mutation p.S894T 0.08 deleterious(0.01) possibly_damaging(0.66) TCGA-DD-A3A9-01 1 15684641 15684641 A T FHAD1 Missense_Mutation p.L79F 0.18 deleterious(0) probably_damaging(0.999) TCGA-DD-A3A9-01 1 157494214 157494214 G A FCRL5 Silent p.V698V 0.09 TCGA-DD-A3A9-01 1 158368322 158368322 T G OR10T2 Missense_Mutation p.K312T 0.12 deleterious(0.02) possibly_damaging(0.494) TCGA-DD-A3A9-01 1 159901621 159901621 G A IGSF9 Missense_Mutation p.P448L 0.09 deleterious(0) probably_damaging(0.987) TCGA-DD-A3A9-01 1 160141549 160141549 T C ATP1A4 Splice_Site p.X618_splice 0.13 TCGA-DD-A3A9-01 1 167038166 167038166 C A GPA33 Missense_Mutation p.L136F 0.09 tolerated(0.21) benign(0.196) TCGA-DD-A3A9-01 1 172357765 172357765 C G DNM3 Missense_Mutation p.L780V 0.09 tolerated_low_confidence(0.65) benign(0.26) TCGA-DD-A3A9-01 1 173545808 173545808 T A SLC9C2 Silent p.V298V 0.06 TCGA-DD-A3A9-01 1 179659883 179659883 T C TDRD5 Silent p.A971A 0.07 TCGA-DD-A3A9-01 1 181706682 181706682 C T CACNA1E Silent p.Y1148Y 0.11 TCGA-DD-A3A9-01 1 181724370 181724370 C T CACNA1E Intron 0.19 TCGA-DD-A3A9-01 1 182442708 182442708 A G RGSL1 Splice_Site p.X155_splice 0.12 TCGA-DD-A3A9-01 1 182617399 182617399 A G RGS8 Missense_Mutation p.F96S 0.08 deleterious(0) probably_damaging(0.992) TCGA-DD-A3A9-01 1 186077693 186077693 T A HMCN1 Silent p.P3651P 0.11 TCGA-DD-A3A9-01 1 186099815 186099815 A T HMCN1 Missense_Mutation p.I4406F 0.11 probably_damaging(0.99) TCGA-DD-A3A9-01 1 186413279 186413279 G T PDC Silent p.I191I 0.08 TCGA-DD-A3A9-01 1 186880457 186880457 T A PLA2G4A Missense_Mutation p.I165K 0.07 deleterious(0) benign(0.051) TCGA-DD-A3A9-01 1 192987803 192987803 A G UCHL5 Intron 0.51 TCGA-DD-A3A9-01 1 197403858 197403858 T A CRB1 Missense_Mutation p.N955K 0.09 tolerated(0.61) benign(0.004) TCGA-DD-A3A9-01 1 201186436 201186436 C T IGFN1 Missense_Mutation p.A3206V 0.12 benign(0.087) TCGA-DD-A3A9-01 1 201757647 201757647 C T NAV1 Missense_Mutation p.P1016L 0.05 deleterious(0.01) probably_damaging(1) TCGA-DD-A3A9-01 1 207198319 207198319 C T C1orf116 Missense_Mutation p.D66N 0.04 deleterious(0) probably_damaging(0.968) TCGA-DD-A3A9-01 1 20940334 20940334 G A CDA Splice_Site p.X89_splice 0.20 TCGA-DD-A3A9-01 1 211093070 211093070 C A KCNH1 Missense_Mutation p.M458I 0.05 deleterious(0.02) benign(0.408) TCGA-DD-A3A9-01 1 216172333 216172333 G T USH2A Missense_Mutation p.H2185N 0.08 benign(0.017) TCGA-DD-A3A9-01 1 216595680 216595680 T C USH2A 5'UTR 0.05 TCGA-DD-A3A9-01 1 216850694 216850694 C T ESRRG Missense_Mutation p.G71R 0.08 deleterious(0.05) possibly_damaging(0.9) TCGA-DD-A3A9-01 1 220387288 220387288 T C RAB3GAP2 Missense_Mutation p.T72A 0.10 tolerated(0.77) benign(0.002) TCGA-DD-A3A9-01 1 222822189 222822189 C T MIA3 Nonsense_Mutation p.Q1210* 0.14 TCGA-DD-A3A9-01 1 223567373 223567373 T A C1orf65 Missense_Mutation p.S186T 0.11 tolerated(0.19) probably_damaging(0.922) TCGA-DD-A3A9-01 1 231411879 231411879 A G GNPAT Splice_Site p.X646_splice 0.09 TCGA-DD-A3A9-01 1 23519871 23519871 A T HTR1D Missense_Mutation p.L281H 0.22 tolerated(0.26) probably_damaging(0.989) TCGA-DD-A3A9-01 1 237713919 237713919 G A RYR2 Missense_Mutation p.D1048N 0.14 probably_damaging(0.953) TCGA-DD-A3A9-01 1 237982484 237982484 T C RYR2 Missense_Mutation p.I4861T 0.06 possibly_damaging(0.803) TCGA-DD-A3A9-01 1 240966242 240966242 A T RGS7 Missense_Mutation p.S441T 0.07 deleterious(0) probably_damaging(0.962) TCGA-DD-A3A9-01 1 248202311 248202311 T C OR2L2 Missense_Mutation p.S248P 0.09 deleterious(0.01) benign(0.427) TCGA-DD-A3A9-01 1 248569623 248569623 T A OR2T1 Missense_Mutation p.Y110N 0.10 deleterious(0) probably_damaging(0.993) TCGA-DD-A3A9-01 1 248685435 248685435 C A OR2G6 Missense_Mutation p.T163N 0.08 deleterious(0) probably_damaging(0.993) TCGA-DD-A3A9-01 1 248737675 248737675 A C OR2T34 Nonsense_Mutation p.Y128* 0.08 TCGA-DD-A3A9-01 1 248756804 248756804 T C OR2T10 Missense_Mutation p.D89G 0.10 tolerated(0.32) benign(0) TCGA-DD-A3A9-01 1 27950548 27950548 T A FGR Intron 0.54 TCGA-DD-A3A9-01 1 34330001 34330001 G A HMGB4 Missense_Mutation p.R70Q 0.20 tolerated(0.05) possibly_damaging(0.744) TCGA-DD-A3A9-01 1 34667800 34667800 C T C1orf94 Silent p.L462L 0.23 TCGA-DD-A3A9-01 1 38033329 38033329 C T GNL2 Missense_Mutation p.R663K 0.20 tolerated(0.67) benign(0.003) TCGA-DD-A3A9-01 1 45163762 45163762 G A C1orf228 Silent p.E101E 0.17 TCGA-DD-A3A9-01 1 57173442 57173442 A G PRKAA2 3'UTR 0.45 TCGA-DD-A3A9-01 1 66102182 66102182 A G LEPR Silent p.K994K 0.20 TCGA-DD-A3A9-01 1 67436586 67436586 G A MIER1 Missense_Mutation p.D290N 0.06 tolerated(0.3) possibly_damaging(0.821) TCGA-DD-A3A9-01 1 86123530 86123530 C A ZNHIT6 Missense_Mutation p.V458L 0.26 tolerated(0.29) benign(0.064) TCGA-DD-A3A9-01 1 92789745 92789745 G A RPAP2 Nonsense_Mutation p.W423* 0.27 TCGA-DD-A3A9-01 1 94495183 94495183 A T ABCA4 Missense_Mutation p.Y1453N 0.18 tolerated(0.24) benign(0.361) TCGA-DD-A3A9-01 20 17616198 17616198 C A RRBP1 Nonsense_Mutation p.E384* 0.30 TCGA-DD-A3A9-01 20 23028767 23028767 G A THBD Missense_Mutation p.P459S 0.15 deleterious(0.01) possibly_damaging(0.906) TCGA-DD-A3A9-01 20 34090341 34090341 A C CEP250 Silent p.R1382R 0.16 TCGA-DD-A3A9-01 20 35238002 35238002 A T C20orf24 Intron 0.11 TCGA-DD-A3A9-01 20 39833219 39833219 C T ZHX3 Missense_Mutation p.G113E 0.19 tolerated(1) benign(0.001) TCGA-DD-A3A9-01 20 43566743 43566743 C G PABPC1L Missense_Mutation p.L563V 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-DD-A3A9-01 20 45204256 45204256 T A SLC13A3 Missense_Mutation p.I430F 0.19 deleterious(0) possibly_damaging(0.836) TCGA-DD-A3A9-01 20 49212742 49212742 C T FAM65C Missense_Mutation p.A613T 0.14 tolerated(0.63) benign(0.008) TCGA-DD-A3A9-01 20 58489028 58489028 A G SYCP2 Splice_Site p.X277_splice 0.16 TCGA-DD-A3A9-01 20 61488865 61488865 C T TCFL5 Missense_Mutation p.G374S 0.10 tolerated(0.08) benign(0.437) TCGA-DD-A3A9-01 21 15579225 15579225 T C LIPI Missense_Mutation p.H7R 0.24 tolerated_low_confidence(0.36) benign(0.031) TCGA-DD-A3A9-01 21 32638540 32638540 C A TIAM1 Missense_Mutation p.G250V 0.12 tolerated(0.28) benign(0.001) TCGA-DD-A3A9-01 21 45709596 45709596 G A AIRE Missense_Mutation p.E237K 0.20 deleterious(0.02) probably_damaging(0.958) TCGA-DD-A3A9-01 21 47754602 47754602 G T PCNT Missense_Mutation p.V187F 0.11 benign(0.023) TCGA-DD-A3A9-01 21 47931358 47931358 G A DIP2A Silent p.K311K 0.21 TCGA-DD-A3A9-01 22 18347690 18347690 C T MICAL3 Silent p.V860V 0.19 TCGA-DD-A3A9-01 22 26422979 26422979 C A MYO18B Missense_Mutation p.Q2347K 0.27 tolerated(0.4) benign(0) TCGA-DD-A3A9-01 22 30899672 30899672 C T SEC14L4 Nonsense_Mutation p.W41* 0.17 TCGA-DD-A3A9-01 22 36920731 36920731 T C EIF3D Missense_Mutation p.H73R 0.19 deleterious(0) probably_damaging(0.99) TCGA-DD-A3A9-01 22 41215288 41215288 C T SLC25A17 5'UTR 0.23 TCGA-DD-A3A9-01 22 42474732 42474732 T A FAM109B 3'UTR 0.15 TCGA-DD-A3A9-01 22 42606358 42606358 C G TCF20 Missense_Mutation p.A1652P 0.10 probably_damaging(0.961) TCGA-DD-A3A9-01 22 45810271 45810271 A G RIBC2 Silent p.R61R 0.20 TCGA-DD-A3A9-01 22 47059981 47059981 G T GRAMD4 Missense_Mutation p.W228C 0.27 deleterious(0) probably_damaging(0.993) TCGA-DD-A3A9-01 2 100194857 100194857 C T AFF3 Silent p.T975T 0.32 TCGA-DD-A3A9-01 2 102968228 102968228 A G IL1RL1 Silent p.V506V 0.15 TCGA-DD-A3A9-01 2 103090418 103090418 T C SLC9A4 Missense_Mutation p.V67A 0.29 deleterious(0) probably_damaging(0.996) TCGA-DD-A3A9-01 2 103124608 103124608 C A SLC9A4 Silent p.I423I 0.15 TCGA-DD-A3A9-01 2 103300730 103300730 T C SLC9A2 Missense_Mutation p.F454L 0.23 deleterious(0) benign(0.389) TCGA-DD-A3A9-01 2 108489237 108489237 T A RGPD4 Missense_Mutation p.S1593T 0.15 tolerated_low_confidence(0.18) benign(0.017) TCGA-DD-A3A9-01 2 113082723 113082723 G A ZC3H6 Missense_Mutation p.D679N 0.30 tolerated(0.1) possibly_damaging(0.51) TCGA-DD-A3A9-01 2 131522827 131522827 T A AMER3 3'UTR 0.22 TCGA-DD-A3A9-01 2 131523920 131523920 G A AMER3 3'UTR 0.18 TCGA-DD-A3A9-01 2 15307372 15307372 T A NBAS Missense_Mutation p.T2306S 0.09 tolerated(0.26) probably_damaging(0.997) TCGA-DD-A3A9-01 2 163361023 163361023 G T KCNH7 Missense_Mutation p.S353Y 0.21 deleterious(0) possibly_damaging(0.753) TCGA-DD-A3A9-01 2 165548775 165548775 G A COBLL1 Silent p.L1124L 0.32 TCGA-DD-A3A9-01 2 179569674 179569674 C A TTN Missense_Mutation p.R9875M 0.13 TCGA-DD-A3A9-01 2 179616369 179616369 T A TTN Intron 0.26 TCGA-DD-A3A9-01 2 179648982 179648982 C T TTN Missense_Mutation p.V864M 0.27 TCGA-DD-A3A9-01 2 18112349 18112349 A G KCNS3 Missense_Mutation p.K25R 0.35 tolerated(0.4) benign(0.014) TCGA-DD-A3A9-01 2 189901361 189901361 T A COL5A2 Missense_Mutation p.D1365V 0.19 unknown(0) TCGA-DD-A3A9-01 2 191898231 191898231 C T STAT4 Missense_Mutation p.D613N 0.27 deleterious(0) benign(0.41) TCGA-DD-A3A9-01 2 192228452 192228452 A T MYO1B Splice_Site p.X256_splice 0.29 TCGA-DD-A3A9-01 2 197521532 197521532 A T CCDC150 Missense_Mutation p.I118F 0.27 deleterious(0) possibly_damaging(0.809) TCGA-DD-A3A9-01 2 203332240 203332240 A G BMPR2 Splice_Site p.X83_splice 0.40 TCGA-DD-A3A9-01 2 210786230 210786230 T G UNC80 Missense_Mutation p.F1718V 0.11 possibly_damaging(0.492) TCGA-DD-A3A9-01 2 213872617 213872617 C G IKZF2 Missense_Mutation p.V350L 0.21 deleterious(0.04) benign(0.17) TCGA-DD-A3A9-01 2 218947924 218947924 G A RUFY4 Missense_Mutation p.G503R 0.27 tolerated(0.2) benign(0.028) TCGA-DD-A3A9-01 2 220116022 220116022 C G TUBA4A Missense_Mutation p.Q133H 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DD-A3A9-01 2 233710580 233710580 G A GIGYF2 Silent p.T1169T 0.15 TCGA-DD-A3A9-01 2 238274558 238274558 C G COL6A3 Missense_Mutation p.R1874T 0.29 possibly_damaging(0.468) TCGA-DD-A3A9-01 2 238990418 238990418 C A SCLY Missense_Mutation p.R193S 0.21 deleterious(0.03) possibly_damaging(0.676) TCGA-DD-A3A9-01 2 23918908 23918908 C T KLHL29 Missense_Mutation p.P610L 0.29 deleterious(0) possibly_damaging(0.841) TCGA-DD-A3A9-01 2 240504890 240504890 G A AC079612.1 3'UTR 0.15 TCGA-DD-A3A9-01 2 241401800 241401800 G A GPC1 Missense_Mutation p.R173H 0.29 deleterious(0.02) probably_damaging(0.996) TCGA-DD-A3A9-01 2 31178813 31178813 G A GALNT14 Missense_Mutation p.P171L 0.27 deleterious(0.02) probably_damaging(1) TCGA-DD-A3A9-01 2 48915238 48915238 C T LHCGR Silent p.K566K 0.10 TCGA-DD-A3A9-01 2 56108782 56108782 G A EFEMP1 Missense_Mutation p.P202L 0.21 tolerated(0.17) benign(0.003) TCGA-DD-A3A9-01 2 74707914 74707914 C T CCDC142 Silent p.K488K 0.10 TCGA-DD-A3A9-01 2 75278382 75278382 C T TACR1 Missense_Mutation p.D310N 0.28 tolerated(0.34) benign(0.043) TCGA-DD-A3A9-01 2 89197175 89197175 C G IGKV5-2 Missense_Mutation p.L74V 0.26 tolerated(0.05) possibly_damaging(0.489) TCGA-DD-A3A9-01 2 90260153 90260153 G - IGKV1D-8 Frame_Shift_Del p.G86Afs*? 0.36 TCGA-DD-A3A9-01 3 107766032 107766032 C T CD47 3'UTR 0.44 TCGA-DD-A3A9-01 3 108178291 108178291 G T MYH15 Missense_Mutation p.N666K 0.08 deleterious(0) benign(0.225) TCGA-DD-A3A9-01 3 108833252 108833252 G A MORC1 Missense_Mutation p.A33V 0.12 deleterious(0) probably_damaging(0.963) TCGA-DD-A3A9-01 3 111899481 111899481 C A SLC9C1 Missense_Mutation p.C893F 0.13 tolerated(0.22) probably_damaging(0.956) TCGA-DD-A3A9-01 3 113720448 113720448 C A KIAA1407 Missense_Mutation p.K719N 0.13 deleterious(0.01) possibly_damaging(0.795) TCGA-DD-A3A9-01 3 118867060 118867060 T C C3orf30 Missense_Mutation p.Y478H 0.13 tolerated(0.55) benign(0.001) TCGA-DD-A3A9-01 3 128181553 128181553 A C DNAJB8 Missense_Mutation p.F179C 0.12 deleterious(0) possibly_damaging(0.863) TCGA-DD-A3A9-01 3 138256157 138256157 C A CEP70 Silent p.T166T 0.08 TCGA-DD-A3A9-01 3 141497352 141497352 A T GRK7 Missense_Mutation p.T76S 0.12 tolerated(0.3) benign(0.034) TCGA-DD-A3A9-01 3 151161336 151161336 G T IGSF10 Missense_Mutation p.T1800K 0.17 tolerated(0.93) benign(0.053) TCGA-DD-A3A9-01 3 155571758 155571758 C T SLC33A1 Missense_Mutation p.S10N 0.46 tolerated_low_confidence(0.72) benign(0) TCGA-DD-A3A9-01 3 157296101 157296101 C T C3orf55 Intron 0.31 TCGA-DD-A3A9-01 3 158399992 158399992 A C GFM1 Intron 0.29 TCGA-DD-A3A9-01 3 164908372 164908372 A G SLITRK3 Missense_Mutation p.Y83H 0.10 deleterious(0.03) possibly_damaging(0.548) TCGA-DD-A3A9-01 3 172048416 172048416 A T FNDC3B Missense_Mutation p.T489S 0.16 tolerated(0.29) benign(0.034) TCGA-DD-A3A9-01 3 179119095 179119095 C G GNB4 Missense_Mutation p.G310A 0.14 tolerated(0.09) benign(0.113) TCGA-DD-A3A9-01 3 182788806 182788806 T A MCCC1 Nonsense_Mutation p.K248* 0.14 TCGA-DD-A3A9-01 3 183014728 183014728 C T MCF2L2 Intron 0.17 TCGA-DD-A3A9-01 3 183967142 183967142 T C ALG3 5'Flank 0.11 TCGA-DD-A3A9-01 3 195507288 195507288 T C MUC4 Silent p.V3721V 0.10 TCGA-DD-A3A9-01 3 26751290 26751290 T G LRRC3B Missense_Mutation p.S43A 0.23 tolerated(0.75) benign(0.024) TCGA-DD-A3A9-01 3 27161263 27161263 T C NEK10 Missense_Mutation p.N1117D 0.16 tolerated(1) benign(0.001) TCGA-DD-A3A9-01 3 48697053 48697053 A T CELSR3 Missense_Mutation p.D1005E 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-DD-A3A9-01 3 52084943 52084943 C T DUSP7 Missense_Mutation p.R383Q 0.21 tolerated(0.16) benign(0.38) TCGA-DD-A3A9-01 3 52441334 52441334 T A BAP1 Splice_Site p.X146_splice 0.62 TCGA-DD-A3A9-01 3 62522190 62522190 T A CADPS Missense_Mutation p.H678L 0.47 deleterious(0) benign(0.227) TCGA-DD-A3A9-01 3 62522191 62522191 G T CADPS Missense_Mutation p.H678N 0.46 deleterious(0) benign(0.107) TCGA-DD-A3A9-01 3 64640083 64640083 C T ADAMTS9 Missense_Mutation p.S421N 0.17 tolerated(0.19) benign(0.052) TCGA-DD-A3A9-01 3 7620822 7620822 C T GRM7 Silent p.A743A 0.20 TCGA-DD-A3A9-01 3 88040703 88040703 C T HTR1F Silent p.L268L 0.17 TCGA-DD-A3A9-01 3 93624977 93624977 G T PROS1 Missense_Mutation p.D119E 0.14 deleterious(0.02) possibly_damaging(0.529) TCGA-DD-A3A9-01 3 93733261 93733261 A C STX19 Missense_Mutation p.C285G 0.08 deleterious(0.01) benign(0.001) TCGA-DD-A3A9-01 3 97753825 97753825 G A GABRR3 RNA 0.15 TCGA-DD-A3A9-01 3 9776289 9776289 G A BRPF1 Silent p.E155E 0.17 TCGA-DD-A3A9-01 4 10445461 10445461 C T ZNF518B Missense_Mutation p.G831E 0.20 tolerated(1) benign(0.012) TCGA-DD-A3A9-01 4 106163573 106163573 A G TET2 Intron 0.21 TCGA-DD-A3A9-01 4 110442311 110442311 C T SEC24B Silent p.L762L 0.21 TCGA-DD-A3A9-01 4 120192951 120192951 A T USP53 Missense_Mutation p.M646L 0.15 tolerated(0.67) benign(0.001) TCGA-DD-A3A9-01 4 158257592 158257592 T A GRIA2 Missense_Mutation p.S513T 0.30 tolerated(0.29) benign(0.101) TCGA-DD-A3A9-01 4 164061471 164061471 T C NAF1 Missense_Mutation p.H261R 0.16 deleterious(0) possibly_damaging(0.901) TCGA-DD-A3A9-01 4 166976353 166976353 T C TLL1 Silent p.N550N 0.19 TCGA-DD-A3A9-01 4 177190077 177190077 T C ASB5 Silent p.V61V 0.16 TCGA-DD-A3A9-01 4 186366663 186366663 T A CCDC110 Missense_Mutation p.H832L 0.18 tolerated_low_confidence(0.56) benign(0.027) TCGA-DD-A3A9-01 4 187455096 187455096 C T MTNR1A Missense_Mutation p.S267N 0.25 tolerated(0.17) benign(0.009) TCGA-DD-A3A9-01 4 38910313 38910313 A G FAM114A1 Missense_Mutation p.K253R 0.14 deleterious(0) probably_damaging(0.998) TCGA-DD-A3A9-01 4 46967002 46967002 A T GABRA4 Silent p.P373P 0.11 TCGA-DD-A3A9-01 4 48607809 48607809 T A FRYL Silent p.I261I 0.22 TCGA-DD-A3A9-01 4 57181400 57181400 G T KIAA1211 Missense_Mutation p.A578S 0.33 tolerated(0.58) benign(0.08) TCGA-DD-A3A9-01 4 62800605 62800605 T A LPHN3 Missense_Mutation p.N652K 0.27 tolerated(0.86) benign(0.003) TCGA-DD-A3A9-01 4 86852134 86852134 A T ARHGAP24 Intron 0.21 TCGA-DD-A3A9-01 5 115811300 115811300 C G SEMA6A Splice_Site p.X550_splice 0.10 TCGA-DD-A3A9-01 5 123983011 123983011 A G ZNF608 Silent p.S1022S 0.18 TCGA-DD-A3A9-01 5 128301787 128301787 G A SLC27A6 5'UTR 0.17 TCGA-DD-A3A9-01 5 133914456 133914456 C T JADE2 Missense_Mutation p.P608S 0.25 tolerated(0.74) benign(0.269) TCGA-DD-A3A9-01 5 134121190 134121190 C G DDX46 Missense_Mutation p.Q460E 0.09 deleterious(0) probably_damaging(0.999) TCGA-DD-A3A9-01 5 13692155 13692155 T C DNAH5 Missense_Mutation p.T4605A 0.11 possibly_damaging(0.523) TCGA-DD-A3A9-01 5 137426301 137426301 G C WNT8A Missense_Mutation p.A199P 0.12 tolerated(0.31) probably_damaging(1) TCGA-DD-A3A9-01 5 138266252 138266252 G T CTNNA1 Nonsense_Mutation p.E701* 0.13 TCGA-DD-A3A9-01 5 138665116 138665116 A G MATR3 3'UTR 0.19 TCGA-DD-A3A9-01 5 139219614 139219614 G A PSD2 Silent p.E657E 0.10 TCGA-DD-A3A9-01 5 139239488 139239488 C T NRG2 Intron 0.13 TCGA-DD-A3A9-01 5 140348722 140348722 T A PCDHAC2 Missense_Mutation p.Y791N 0.19 deleterious(0.01) probably_damaging(0.917) TCGA-DD-A3A9-01 5 140432602 140432602 C A PCDHB1 Missense_Mutation p.A516E 0.28 deleterious(0) probably_damaging(1) TCGA-DD-A3A9-01 5 140711003 140711003 T C PCDHGA1 Missense_Mutation p.V251A 0.22 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-DD-A3A9-01 5 141248811 141248811 T A PCDH1 Missense_Mutation p.S76C 0.05 deleterious(0) probably_damaging(0.999) TCGA-DD-A3A9-01 5 143853260 143853260 C G KCTD16 Missense_Mutation p.C290W 0.15 tolerated(0.06) possibly_damaging(0.793) TCGA-DD-A3A9-01 5 147593570 147593570 C T SPINK6 Missense_Mutation p.A60V 0.17 deleterious(0.01) possibly_damaging(0.744) TCGA-DD-A3A9-01 5 150715069 150715069 A G SLC36A2 Missense_Mutation p.S189P 0.31 tolerated(0.89) benign(0.004) TCGA-DD-A3A9-01 5 150945319 150945319 G A FAT2 Silent p.D1058D 0.14 TCGA-DD-A3A9-01 5 151775082 151775082 C G NMUR2 Missense_Mutation p.S292T 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-DD-A3A9-01 5 153433432 153433432 A G MFAP3 3'UTR 0.14 TCGA-DD-A3A9-01 5 158250310 158250310 T C EBF1 Missense_Mutation p.T218A 0.15 deleterious(0.04) benign(0.176) TCGA-DD-A3A9-01 5 161116665 161116665 A G GABRA6 Missense_Mutation p.I185V 0.16 tolerated(0.76) probably_damaging(0.986) TCGA-DD-A3A9-01 5 161128867 161128867 T A GABRA6 3'UTR 0.12 TCGA-DD-A3A9-01 5 169504811 169504811 G A DOCK2 Missense_Mutation p.C1655Y 0.17 tolerated(0.1) benign(0.139) TCGA-DD-A3A9-01 5 174937183 174937183 G A SFXN1 Missense_Mutation p.R136K 0.12 deleterious(0) probably_damaging(0.951) TCGA-DD-A3A9-01 5 176072878 176072878 A G EIF4E1B Missense_Mutation p.K209R 0.18 deleterious(0.04) probably_damaging(0.987) TCGA-DD-A3A9-01 5 178359572 178359572 A G ZFP2 Missense_Mutation p.I420V 0.13 tolerated(0.16) possibly_damaging(0.732) TCGA-DD-A3A9-01 5 41941432 41941432 A T FBXO4 3'UTR 0.18 TCGA-DD-A3A9-01 5 54320546 54320546 G A GZMK Missense_Mutation p.M41I 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-DD-A3A9-01 5 72857022 72857022 T C ANKRA2 Silent p.K127K 0.10 TCGA-DD-A3A9-01 5 77409598 77409598 T C AP3B1 Missense_Mutation p.N743D 0.23 tolerated(0.54) benign(0.292) TCGA-DD-A3A9-01 5 7743819 7743819 T C ADCY2 Missense_Mutation p.L637P 0.18 tolerated(0.33) benign(0.021) TCGA-DD-A3A9-01 5 889840 889840 T C BRD9 Intron 0.14 TCGA-DD-A3A9-01 5 94114816 94114816 T A MCTP1 Missense_Mutation p.K870M 0.15 deleterious(0) probably_damaging(1) TCGA-DD-A3A9-01 5 94749823 94749823 G T FAM81B Missense_Mutation p.A156S 0.20 tolerated(0.1) probably_damaging(0.983) TCGA-DD-A3A9-01 5 98212136 98212136 T C CHD1 Missense_Mutation p.N1122D 0.25 tolerated(0.62) benign(0.306) TCGA-DD-A3A9-01 6 100960788 100960788 T A ASCC3 Missense_Mutation p.N2028Y 0.14 deleterious(0.03) benign(0.126) TCGA-DD-A3A9-01 6 106987360 106987360 G A AIM1 Missense_Mutation p.D1193N 0.12 tolerated(0.43) benign(0.065) TCGA-DD-A3A9-01 6 108365893 108365893 T C OSTM1 3'UTR 0.18 TCGA-DD-A3A9-01 6 108372335 108372335 T A OSTM1 Missense_Mutation p.Y228F 0.12 deleterious(0) probably_damaging(1) TCGA-DD-A3A9-01 6 117248312 117248312 C T RFX6 Missense_Mutation p.P670S 0.07 tolerated_low_confidence(0.57) benign(0.002) TCGA-DD-A3A9-01 6 119390243 119390243 T G FAM184A Intron 0.11 TCGA-DD-A3A9-01 6 127607830 127607830 C T RNF146 Silent p.S24S 0.10 TCGA-DD-A3A9-01 6 138531046 138531046 G A KIAA1244 Splice_Site p.X74_splice 0.10 TCGA-DD-A3A9-01 6 138655566 138655566 C T KIAA1244 Silent p.D1861D 0.10 TCGA-DD-A3A9-01 6 146755591 146755591 C T GRM1 Silent p.L1082L 0.10 TCGA-DD-A3A9-01 6 148841002 148841002 G A SASH1 Silent p.K394K 0.25 TCGA-DD-A3A9-01 6 152740828 152740828 T C SYNE1 Missense_Mutation p.E1766G 0.08 benign(0.37) TCGA-DD-A3A9-01 6 1612242 1612242 C T FOXC1 Missense_Mutation p.S521F 0.09 deleterious(0) probably_damaging(0.962) TCGA-DD-A3A9-01 6 1613461 1613461 G A FOXC1 3'UTR 0.09 TCGA-DD-A3A9-01 6 16145483 16145483 A G MYLIP Missense_Mutation p.I395V 0.03 deleterious(0.03) benign(0.026) TCGA-DD-A3A9-01 6 165715083 165715083 G A C6orf118 Missense_Mutation p.A243V 0.12 tolerated(0.82) benign(0.001) TCGA-DD-A3A9-01 6 167570796 167570796 A T GPR31 Missense_Mutation p.I175N 0.07 tolerated(0.35) benign(0.005) TCGA-DD-A3A9-01 6 24146149 24146149 A G NRSN1 Missense_Mutation p.N188S 0.12 tolerated(0.06) benign(0.017) TCGA-DD-A3A9-01 6 26216467 26216467 G A HIST1H2BG 3'UTR 0.08 TCGA-DD-A3A9-01 6 27114596 27114596 G A HIST1H2BK 5'UTR 0.37 TCGA-DD-A3A9-01 6 27279209 27279209 G A POM121L2 Silent p.G247G 0.08 TCGA-DD-A3A9-01 6 27368100 27368100 T A ZNF391 5'UTR 0.07 TCGA-DD-A3A9-01 6 27806843 27806843 G A HIST1H2BN 3'UTR 0.14 TCGA-DD-A3A9-01 6 28473513 28473513 T A GPX6 Silent p.G142G 0.06 TCGA-DD-A3A9-01 6 30457636 30457636 G T HLA-E Missense_Mutation p.M66I 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.509) TCGA-DD-A3A9-01 6 30918300 30918300 C A DPCR1 Missense_Mutation p.P687T 0.16 tolerated(1) benign(0) TCGA-DD-A3A9-01 6 31694918 31694918 A G DDAH2 3'UTR 0.14 TCGA-DD-A3A9-01 6 31827993 31827993 T C NEU1 Missense_Mutation p.N283D 0.13 tolerated(0.13) probably_damaging(0.95) TCGA-DD-A3A9-01 6 31911759 31911759 G A CFB Missense_Mutation p.C447Y 0.14 deleterious(0) probably_damaging(0.942) TCGA-DD-A3A9-01 6 33236937 33236937 C G VPS52 Missense_Mutation p.Q134H 0.17 tolerated(0.15) probably_damaging(0.976) TCGA-DD-A3A9-01 6 36449534 36449534 A G KCTD20 Missense_Mutation p.Q285R 0.13 deleterious(0.01) possibly_damaging(0.489) TCGA-DD-A3A9-01 6 36730726 36730726 C T CPNE5 Missense_Mutation p.A275T 0.27 tolerated(0.21) benign(0.069) TCGA-DD-A3A9-01 6 37606362 37606362 T C MDGA1 Missense_Mutation p.N873S 0.09 tolerated(0.07) probably_damaging(0.947) TCGA-DD-A3A9-01 6 37611590 37611590 T C MDGA1 Missense_Mutation p.H844R 0.10 deleterious(0) probably_damaging(0.994) TCGA-DD-A3A9-01 6 41196565 41196565 T C TREML4 Silent p.S59S 0.13 TCGA-DD-A3A9-01 6 43623341 43623341 C G RSPH9 Intron 0.08 TCGA-DD-A3A9-01 6 44797582 44797582 T A SUPT3H Missense_Mutation p.R320W 0.11 deleterious(0) possibly_damaging(0.897) TCGA-DD-A3A9-01 6 46823751 46823751 A G GPR116 Silent p.S1307S 0.13 TCGA-DD-A3A9-01 6 51609291 51609291 T C PKHD1 Missense_Mutation p.R3350G 0.14 deleterious(0.05) benign(0.011) TCGA-DD-A3A9-01 6 51917941 51917941 G A PKHD1 Silent p.L691L 0.08 TCGA-DD-A3A9-01 6 51949781 51949781 T C PKHD1 5'UTR 0.06 TCGA-DD-A3A9-01 6 52009213 52009213 G A MIR206 RNA 0.09 TCGA-DD-A3A9-01 6 53764548 53764548 A G LRRC1 Missense_Mutation p.I216V 0.13 tolerated(0.07) benign(0.019) TCGA-DD-A3A9-01 6 63990576 63990576 T A LGSN Missense_Mutation p.R294W 0.11 deleterious(0) possibly_damaging(0.755) TCGA-DD-A3A9-01 6 73017069 73017069 C T RIMS1 Missense_Mutation p.S1320F 0.05 tolerated(0.07) possibly_damaging(0.775) TCGA-DD-A3A9-01 6 75884975 75884975 A G COL12A1 Missense_Mutation p.M830T 0.17 benign(0.195) TCGA-DD-A3A9-01 6 75912519 75912519 C T COL12A1 5'UTR 0.22 TCGA-DD-A3A9-01 6 90581017 90581017 C T CASP8AP2 RNA 0.20 TCGA-DD-A3A9-01 6 96658205 96658205 A T FUT9 3'UTR 0.08 TCGA-DD-A3A9-01 6 96973201 96973201 A T UFL1 Missense_Mutation p.E94V 0.24 deleterious(0) possibly_damaging(0.804) TCGA-DD-A3A9-01 6 99283906 99283906 C A POU3F2 Missense_Mutation p.S386Y 0.37 deleterious(0) probably_damaging(0.974) TCGA-DD-A3A9-01 6 99283907 99283907 C A POU3F2 Silent p.S386S 0.38 TCGA-DD-A3A9-01 6 99790885 99790885 T C FAXC Silent p.K97K 0.15 TCGA-DD-A3A9-01 7 100334543 100334543 A G ZAN Missense_Mutation p.H122R 0.18 benign(0.206) TCGA-DD-A3A9-01 7 112102235 112102235 G A IFRD1 Splice_Site p.X266_splice 0.12 TCGA-DD-A3A9-01 7 112579749 112579749 C T C7orf60 Silent p.P19P 0.21 TCGA-DD-A3A9-01 7 128445575 128445575 C A CCDC136 Missense_Mutation p.N315K 0.27 tolerated(0.29) benign(0.007) TCGA-DD-A3A9-01 7 150698351 150698351 C T NOS3 Silent p.A422A 0.18 TCGA-DD-A3A9-01 7 150773389 150773389 G A SLC4A2 Missense_Mutation p.A1221T 0.17 tolerated(0.07) possibly_damaging(0.577) TCGA-DD-A3A9-01 7 44054359 44054359 T A SPDYE1 3'Flank 0.12 TCGA-DD-A3A9-01 7 47933628 47933628 C T PKD1L1 Missense_Mutation p.S767N 0.09 deleterious(0) probably_damaging(0.997) TCGA-DD-A3A9-01 7 80432091 80432091 T C SEMA3C Missense_Mutation p.D269G 0.18 deleterious(0) probably_damaging(0.999) TCGA-DD-A3A9-01 7 90042146 90042146 A G CLDN12 Silent p.T52T 0.13 TCGA-DD-A3A9-01 7 91708755 91708755 A G AKAP9 Silent p.E2436E 0.06 TCGA-DD-A3A9-01 7 92098738 92098738 T C ERVW-1 Missense_Mutation p.I320V 0.12 tolerated(0.56) benign(0.268) TCGA-DD-A3A9-01 7 92905597 92905597 C A CCDC132 Missense_Mutation p.Q308K 0.20 deleterious(0.01) benign(0.312) TCGA-DD-A3A9-01 7 95614244 95614244 A G DYNC1I1 Missense_Mutation p.D250G 0.16 deleterious(0.01) benign(0.004) TCGA-DD-A3A9-01 8 110401347 110401347 T - PKHD1L1 Frame_Shift_Del p.S222Lfs*20 0.14 TCGA-DD-A3A9-01 8 143994784 143994784 G A CYP11B2 Silent p.A346A 0.14 TCGA-DD-A3A9-01 8 32600302 32600302 G T NRG1 Intron 0.36 TCGA-DD-A3A9-01 9 107298487 107298487 A G OR13C3 Missense_Mutation p.I203T 0.20 deleterious(0.01) benign(0.41) TCGA-DD-A3A9-01 9 113509954 113509954 G A MUSK Missense_Mutation p.D263N 0.25 tolerated(0.33) possibly_damaging(0.758) TCGA-DD-A3A9-01 9 114348379 114348379 T A PTGR1 Silent p.T92T 0.18 TCGA-DD-A3A9-01 9 116973290 116973290 G A COL27A1 Missense_Mutation p.G784D 0.14 unknown(0) TCGA-DD-A3A9-01 9 127177705 127177705 C G PSMB7 5'UTR 0.18 TCGA-DD-A3A9-01 9 127284984 127284984 T C NR6A1 Nonstop_Mutation p.*481Wext*66 0.13 TCGA-DD-A3A9-01 9 132632035 132632035 T C USP20 Missense_Mutation p.Y493H 0.04 tolerated(1) benign(0.009) TCGA-DD-A3A9-01 9 134038560 134038560 G A NUP214 Missense_Mutation p.S908N 0.17 possibly_damaging(0.598) TCGA-DD-A3A9-01 9 139361447 139361447 A G SEC16A Silent p.Y1297Y 0.21 TCGA-DD-A3A9-01 9 140880973 140880973 G - CACNA1B Frame_Shift_Del p.M628Cfs*33 0.27 TCGA-DD-A3A9-01 9 14824891 14824891 T A FREM1 Missense_Mutation p.I661L 0.25 tolerated(0.39) benign(0.02) TCGA-DD-A3A9-01 9 21186805 21186805 A G IFNA4 3'UTR 0.16 TCGA-DD-A3A9-01 9 27173269 27173269 A G TEK Silent p.G270G 0.18 TCGA-DD-A3A9-01 9 6413527 6413527 A G UHRF2 Missense_Mutation p.T13A 0.15 tolerated(0.2) probably_damaging(0.987) TCGA-DD-A3A9-01 9 71668103 71668103 A G FXN Missense_Mutation p.D104G 0.16 deleterious(0.03) probably_damaging(0.925) TCGA-DD-A3A9-01 9 72895730 72895730 G T SMC5 Missense_Mutation p.R245I 0.13 deleterious(0) probably_damaging(0.999) TCGA-DD-A3A9-01 9 86618864 86618864 A G RMI1 3'UTR 0.16 TCGA-DD-A3A9-01 9 90535712 90535712 A T SPATA31C1 RNA 0.22 TCGA-DD-A3A9-01 9 97082514 97082514 A G NUTM2F Silent p.C448C 0.22 TCGA-DD-A3A9-01 9 990928 990928 C T DMRT3 Nonsense_Mutation p.Q448* 0.14 TCGA-DD-A3A9-01 X 100240896 100240896 C A ARL13A Missense_Mutation p.P124H 0.18 deleterious(0) probably_damaging(0.999) TCGA-DD-A3A9-01 X 100601379 100601379 G A TIMM8A 3'UTR 0.18 TCGA-DD-A3A9-01 X 100807847 100807848 GC - ARMCX1 5'UTR 0.24 TCGA-DD-A3A9-01 X 105179196 105179196 A G NRK Silent p.S1179S 0.11 TCGA-DD-A3A9-01 X 106185319 106185319 C A MORC4 Missense_Mutation p.A837S 0.21 deleterious_low_confidence(0.05) probably_damaging(0.999) TCGA-DD-A3A9-01 X 114953634 114953634 G A RP1-241P17.4 5'UTR 0.15 TCGA-DD-A3A9-01 X 117752606 117752606 A G DOCK11 Missense_Mutation p.D1129G 0.23 deleterious(0.03) benign(0.006) TCGA-DD-A3A9-01 X 129349772 129349772 T A ZNF280C Missense_Mutation p.N611Y 0.19 deleterious(0) possibly_damaging(0.827) TCGA-DD-A3A9-01 X 131212020 131212020 G A FRMD7 Silent p.A675A 0.14 TCGA-DD-A3A9-01 X 135957309 135957309 A G RBMX Silent p.G267G 0.17 TCGA-DD-A3A9-01 X 13771456 13771456 G A OFD1 Intron 0.16 TCGA-DD-A3A9-01 X 13801604 13801604 C T GPM6B Silent p.A135A 0.14 TCGA-DD-A3A9-01 X 14910893 14910893 A G MOSPD2 Missense_Mutation p.D43G 0.13 deleterious(0) probably_damaging(0.961) TCGA-DD-A3A9-01 X 151093288 151093288 A G MAGEA4 3'UTR 0.19 TCGA-DD-A3A9-01 X 153284220 153284220 C T IRAK1 Missense_Mutation p.V187M 0.15 tolerated(0.11) benign(0.017) TCGA-DD-A3A9-01 X 153580981 153580981 G T FLNA Missense_Mutation p.R2148S 0.18 tolerated(0.08) benign(0.195) TCGA-DD-A3A9-01 X 17818831 17818831 A G RAI2 Missense_Mutation p.S434P 0.19 deleterious(0.04) unknown(0) TCGA-DD-A3A9-01 X 19371270 19371270 C T PDHA1 Silent p.G201G 0.17 TCGA-DD-A3A9-01 X 26212302 26212302 C A MAGEB6 Silent p.G113G 0.28 TCGA-DD-A3A9-01 X 34150303 34150303 C T FAM47A Silent p.A31A 0.14 TCGA-DD-A3A9-01 X 46332490 46332490 T C KRBOX4 3'UTR 0.19 TCGA-DD-A3A9-01 X 47062208 47062208 A G UBA1 Missense_Mutation p.M410V 0.16 deleterious(0.02) benign(0.035) TCGA-DD-A3A9-01 X 48368178 48368178 C G PORCN 5'UTR 0.28 TCGA-DD-A3A9-01 X 49103272 49103272 C T CCDC22 Silent p.A265A 0.23 TCGA-DD-A3A9-01 X 49646580 49646580 A G USP27X 3'UTR 0.19 TCGA-DD-A3A9-01 X 50037910 50037910 G C CCNB3 Missense_Mutation p.E84D 0.19 tolerated(0.08) benign(0.089) TCGA-DD-A3A9-01 X 50147103 50147103 C T DGKK RNA 0.15 TCGA-DD-A3A9-01 X 50345797 50345797 A G SHROOM4 Missense_Mutation p.F1260L 0.21 tolerated(0.3) benign(0.047) TCGA-DD-A3A9-01 X 53563161 53563161 G C HUWE1 Missense_Mutation p.L4160V 0.22 unknown(0) TCGA-DD-A3A9-01 X 54823434 54823434 G A ITIH6 Silent p.A66A 0.04 TCGA-DD-A3A9-01 X 62570078 62570078 A G SPIN4 Silent p.H207H 0.23 TCGA-DD-A3A9-01 X 70320820 70320820 G A FOXO4 Missense_Mutation p.R247H 0.27 tolerated(0.11) benign(0.002) TCGA-DD-A3A9-01 X 77528233 77528233 T C CYSLTR1 Silent p.V337V 0.18 TCGA-DD-A3A9-01 X 83129239 83129239 A G CYLC1 Missense_Mutation p.D508G 0.28 tolerated(0.14) possibly_damaging(0.549) TCGA-DD-A3A9-01 X 91133861 91133861 G C PCDH11X Missense_Mutation p.K874N 0.20 tolerated(0.08) possibly_damaging(0.904) TCGA-DD-A3A9-01 X 92964819 92964819 A G FAM133A Missense_Mutation p.K134R 0.29 deleterious_low_confidence(0.03) unknown(0) TCGA-DD-A4NA-01 10 45486412 45486412 A G RASSF4 Silent p.K234K 0.35 TCGA-DD-A4NA-01 10 76910777 76910777 G T SAMD8 Missense_Mutation p.G164V 0.38 tolerated(0.13) benign(0.269) TCGA-DD-A4NA-01 11 117263284 117263284 G T CEP164 Missense_Mutation p.G812W 0.31 deleterious(0) possibly_damaging(0.9) TCGA-DD-A4NA-01 12 132588954 132588954 C T EP400NL Intron 0.30 TCGA-DD-A4NA-01 12 44176211 44176211 T C IRAK4 Missense_Mutation p.I348T 0.42 deleterious(0) possibly_damaging(0.762) TCGA-DD-A4NA-01 12 64196151 64196151 G A TMEM5 Missense_Mutation p.V237M 0.27 tolerated(0.11) benign(0.01) TCGA-DD-A4NA-01 15 88472268 88472268 C A NTRK3 Intron 0.41 TCGA-DD-A4NA-01 16 2327903 2327903 G A ABCA3 Missense_Mutation p.A1629V 0.39 tolerated(0.27) benign(0.025) TCGA-DD-A4NA-01 16 4606689 4606689 G A C16orf96 Missense_Mutation p.A67T 0.11 deleterious(0) possibly_damaging(0.887) TCGA-DD-A4NA-01 16 55725913 55725913 T C SLC6A2 Silent p.N289N 0.40 TCGA-DD-A4NA-01 17 19285247 19285247 G A MAPK7 Missense_Mutation p.G544E 0.71 tolerated_low_confidence(0.51) unknown(0) TCGA-DD-A4NA-01 17 71437017 71437017 G A SDK2 Missense_Mutation p.P220L 0.29 deleterious(0) probably_damaging(0.955) TCGA-DD-A4NA-01 19 14046601 14046601 C T PODNL1 Missense_Mutation p.A150T 0.40 tolerated(0.08) possibly_damaging(0.713) TCGA-DD-A4NA-01 19 3179635 3179635 C A S1PR4 Missense_Mutation p.A282D 0.53 tolerated(0.12) probably_damaging(0.96) TCGA-DD-A4NA-01 19 49519408 49519408 G C LHB Missense_Mutation p.R115G 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-DD-A4NA-01 19 9033614 9033614 C T MUC16 Missense_Mutation p.G12108D 0.13 possibly_damaging(0.774) TCGA-DD-A4NA-01 1 110741142 110741142 G A SLC6A17 3'UTR 0.45 TCGA-DD-A4NA-01 1 152883644 152883644 G C IVL Silent p.V457V 0.36 TCGA-DD-A4NA-01 1 155170766 155170766 C - THBS3 Frame_Shift_Del p.Q491Rfs*114 0.25 TCGA-DD-A4NA-01 1 155175006 155175006 G A THBS3 Nonsense_Mutation p.R130* 0.40 TCGA-DD-A4NA-01 1 156051766 156051766 T C MEX3A Silent p.G8G 0.30 TCGA-DD-A4NA-01 1 172571313 172571313 A T SUCO Missense_Mutation p.Y1043F 0.33 tolerated(0.59) benign(0.012) TCGA-DD-A4NA-01 20 1299029 1299029 T A SDCBP2 Missense_Mutation p.Y53F 0.34 tolerated(0.08) probably_damaging(0.973) TCGA-DD-A4NA-01 21 45810827 45810827 C G TRPM2 Missense_Mutation p.D453E 0.40 tolerated(0.24) benign(0.033) TCGA-DD-A4NA-01 22 25246291 25246291 C A SGSM1 Missense_Mutation p.P116Q 0.29 tolerated(0.2) benign(0.146) TCGA-DD-A4NA-01 2 128366325 128366325 G A MYO7B Missense_Mutation p.A896T 0.34 tolerated(0.42) benign(0.007) TCGA-DD-A4NA-01 2 170029679 170029679 G A LRP2 Silent p.Y3690Y 0.38 TCGA-DD-A4NA-01 2 209113113 209113113 G C IDH1 Missense_Mutation p.R132G 0.46 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DD-A4NA-01 2 42488346 42488346 C T EML4 Nonsense_Mutation p.R142* 0.15 TCGA-DD-A4NA-01 3 52440918 52440918 A C BAP1 Missense_Mutation p.W196G 0.57 deleterious(0) probably_damaging(0.995) TCGA-DD-A4NA-01 4 144134995 144134995 T C USP38 Silent p.P622P 0.40 TCGA-DD-A4NA-01 5 111754814 111754814 G A EPB41L4A 5'UTR 0.15 TCGA-DD-A4NA-01 5 135692416 135692416 G A TRPC7 Silent p.N220N 0.43 TCGA-DD-A4NA-01 5 170736726 170736726 C A TLX3 Missense_Mutation p.S119R 0.32 deleterious(0.02) benign(0.266) TCGA-DD-A4NA-01 5 78322295 78322295 G A DMGDH Silent p.A714A 0.36 TCGA-DD-A4NA-01 6 136268612 136268612 A - PDE7B Frame_Shift_Del p.I12Sfs*21 0.41 TCGA-DD-A4NA-01 6 30457628 30457628 C A HLA-E Missense_Mutation p.P64T 0.26 deleterious_low_confidence(0) possibly_damaging(0.536) TCGA-DD-A4NA-01 6 4996590 4996590 T G RPP40 Missense_Mutation p.K208N 0.37 tolerated(0.1) possibly_damaging(0.529) TCGA-DD-A4NA-01 7 142881004 142881004 T C TAS2R39 Missense_Mutation p.S165P 0.33 deleterious(0) probably_damaging(1) TCGA-DD-A4NA-01 7 91794266 91794266 T C LRRD1 Missense_Mutation p.N84S 0.09 tolerated_low_confidence(0.49) benign(0.001) TCGA-DD-A4NA-01 X 11139831 11139831 G A HCCS Silent p.K236K 0.34 TCGA-DD-A4NA-01 X 14027050 14027050 G A GEMIN8 Silent p.V237V 0.35 TCGA-DD-A4NB-01 11 1263483 1263484 AG - MUC5B Frame_Shift_Del p.E1792Vfs*3 0.20 TCGA-DD-A4NB-01 12 25380255 25380255 C A KRAS Missense_Mutation p.R68M 0.20 deleterious(0) probably_damaging(1) TCGA-DD-A4NB-01 14 62547559 62547559 A G SYT16 Missense_Mutation p.D334G 0.25 tolerated(0.06) benign(0.001) TCGA-DD-A4NB-01 14 94038399 94038399 A T UNC79 Missense_Mutation p.N462Y 0.36 tolerated(0.1) benign(0.112) TCGA-DD-A4NB-01 16 29882980 29882980 G A SEZ6L2 3'UTR 0.26 TCGA-DD-A4NB-01 16 633549 633549 C - PIGQ Frame_Shift_Del p.V735Sfs*34 0.19 TCGA-DD-A4NB-01 18 7888162 7888162 C T PTPRM Silent p.L85L 0.24 TCGA-DD-A4NB-01 19 37643714 37643714 A C ZNF585A Missense_Mutation p.F308V 0.22 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NB-01 19 40698304 40698304 G A MAP3K10 Silent p.V122V 0.46 TCGA-DD-A4NB-01 19 52569235 52569235 A T ZNF841 Missense_Mutation p.F634I 0.09 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NB-01 19 53117500 53117500 T C ZNF83 Silent p.L106L 0.12 TCGA-DD-A4NB-01 19 9643591 9643591 G C ZNF426 Missense_Mutation p.I85M 0.21 deleterious(0.03) benign(0.025) TCGA-DD-A4NB-01 1 150532541 150532541 C A ADAMTSL4 Missense_Mutation p.Q1032K 0.24 tolerated(0.1) benign(0.17) TCGA-DD-A4NB-01 1 234041461 234041461 C T SLC35F3 Silent p.I80I 0.25 TCGA-DD-A4NB-01 1 55013964 55013964 T C ACOT11 5'UTR 0.18 TCGA-DD-A4NB-01 20 57607328 57607328 G C ATP5E 5'UTR 0.10 TCGA-DD-A4NB-01 2 165946841 165946841 T C SCN3A Missense_Mutation p.K1941R 0.25 tolerated(0.12) benign(0.396) TCGA-DD-A4NB-01 2 182542873 182542885 CATGGGAGCTGTC - NEUROD1 Frame_Shift_Del p.D235Sfs*23 0.12 TCGA-DD-A4NB-01 2 1915796 1915796 G C MYT1L Missense_Mutation p.R567G 0.07 deleterious(0) probably_damaging(0.989) TCGA-DD-A4NB-01 2 202131436 202131437 - AG CASP8 Frame_Shift_Ins p.T136Vfs*4 0.17 TCGA-DD-A4NB-01 2 211507320 211507322 TGA - CPS1 In_Frame_Del p.D1031del 0.10 TCGA-DD-A4NB-01 2 234638003 234638003 G T UGT1A3 Silent p.L77L 0.20 TCGA-DD-A4NB-01 2 28113223 28113223 T C RBKS 5'UTR 0.24 TCGA-DD-A4NB-01 2 97873573 97873573 G C ANKRD36 Missense_Mutation p.L1063F 0.11 tolerated_low_confidence(0.27) unknown(0) TCGA-DD-A4NB-01 3 108203986 108203986 A G MYH15 Missense_Mutation p.F376L 0.25 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NB-01 3 184002776 184002810 TTGAGTTCCTGTCTTTCTTGCTGTCACCATTGGAG - ECE2 Frame_Shift_Del p.F464* 0.13 TCGA-DD-A4NB-01 3 193854156 193854156 A C HES1 5'UTR 0.38 TCGA-DD-A4NB-01 3 62356899 62356899 G T FEZF2 Missense_Mutation p.H371Q 0.13 deleterious(0) possibly_damaging(0.85) TCGA-DD-A4NB-01 4 88012960 88012963 AGTT - AFF1 Frame_Shift_Del p.S403Lfs*2 0.17 TCGA-DD-A4NB-01 5 161903 161903 C T PLEKHG4B Silent p.S475S 0.15 TCGA-DD-A4NB-01 5 179226059 179226059 G A MGAT4B Silent p.S419S 0.11 TCGA-DD-A4NB-01 5 52193327 52193327 T C ITGA1 Missense_Mutation p.S378P 0.17 deleterious(0.01) probably_damaging(0.912) TCGA-DD-A4NB-01 5 94001726 94001726 T G ANKRD32 Missense_Mutation p.I510S 0.08 deleterious(0) possibly_damaging(0.488) TCGA-DD-A4NB-01 6 27100892 27100892 G A HIST1H2AG Silent p.K14K 0.10 TCGA-DD-A4NB-01 6 31610883 31610883 G A BAG6 Missense_Mutation p.T559I 0.40 tolerated(0.11) probably_damaging(0.979) TCGA-DD-A4NB-01 6 96658209 96658209 T A FUT9 3'UTR 0.11 TCGA-DD-A4NB-01 7 92734353 92734353 G A SAMD9 Missense_Mutation p.T353M 0.20 tolerated(0.33) benign(0.002) TCGA-DD-A4NB-01 8 59720196 59720196 A T TOX 3'UTR 0.38 TCGA-DD-A4NB-01 9 130569921 130569921 G T FPGS Missense_Mutation p.G233V 0.08 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NB-01 9 20740268 20740268 C T FOCAD Silent p.H107H 0.23 TCGA-DD-A4ND-01 11 108010844 108010844 A G ACAT1 Missense_Mutation p.Q211R 0.20 deleterious(0) probably_damaging(0.999) TCGA-DD-A4ND-01 11 118955777 118955777 G A HMBS Splice_Site p.X11_splice 0.27 TCGA-DD-A4ND-01 11 56058048 56058048 C T OR8H1 Missense_Mutation p.R164K 0.21 tolerated(0.16) benign(0.013) TCGA-DD-A4ND-01 11 6588587 6588587 T A DNHD1 Missense_Mutation p.S3950T 0.17 benign(0.004) TCGA-DD-A4ND-01 11 67352223 67352223 G A GSTP1 Missense_Mutation p.R71H 0.05 deleterious(0) probably_damaging(0.999) TCGA-DD-A4ND-01 12 109879426 109879426 C T MYO1H Nonsense_Mutation p.Q833* 0.14 TCGA-DD-A4ND-01 12 3939151 3939151 T C PARP11 Missense_Mutation p.K18E 0.17 tolerated_low_confidence(0.23) benign(0) TCGA-DD-A4ND-01 12 40707956 40707956 T G LRRK2 Silent p.V1573V 0.24 TCGA-DD-A4ND-01 12 53553482 53553482 A G CSAD Silent p.N438N 0.29 TCGA-DD-A4ND-01 13 23912521 23912521 A T SACS Missense_Mutation p.F1832I 0.09 probably_damaging(0.989) TCGA-DD-A4ND-01 13 36428640 36428640 T G DCLK1 Missense_Mutation p.Q344P 0.21 tolerated(0.28) benign(0.293) TCGA-DD-A4ND-01 13 76382095 76382095 G A LMO7 Missense_Mutation p.C326Y 0.15 deleterious(0) probably_damaging(0.968) TCGA-DD-A4ND-01 14 24898453 24898453 C T CBLN3 5'UTR 0.25 TCGA-DD-A4ND-01 14 58965663 58965663 T G KIAA0586 Missense_Mutation p.F1438V 0.32 tolerated(0.19) benign(0.027) TCGA-DD-A4ND-01 14 73746111 73746111 A C NUMB Missense_Mutation p.F373C 0.15 tolerated(0.11) benign(0.376) TCGA-DD-A4ND-01 14 74364881 74364881 C T ZNF410 Missense_Mutation p.L183F 0.33 deleterious(0.04) possibly_damaging(0.833) TCGA-DD-A4ND-01 15 79748973 79748973 G T KIAA1024 Missense_Mutation p.D162Y 0.21 deleterious(0.01) possibly_damaging(0.759) TCGA-DD-A4ND-01 15 91461902 91461902 G A MAN2A2 Missense_Mutation p.A1073T 0.16 deleterious(0) probably_damaging(1) TCGA-DD-A4ND-01 16 72993867 72993867 G A ZFHX3 Missense_Mutation p.R60C 0.30 benign(0.002) TCGA-DD-A4ND-01 16 85697087 85697087 G A GSE1 Silent p.Q837Q 0.23 TCGA-DD-A4ND-01 17 33486549 33486549 T A UNC45B Missense_Mutation p.Y322N 0.21 deleterious(0.05) benign(0.217) TCGA-DD-A4ND-01 17 37619175 37619175 C T CDK12 Missense_Mutation p.A284V 0.12 unknown(0) TCGA-DD-A4ND-01 17 38935981 38935981 T A KRT27 Missense_Mutation p.R273W 0.21 deleterious(0) probably_damaging(0.943) TCGA-DD-A4ND-01 17 5042895 5042895 G A USP6 Nonsense_Mutation p.W475* 0.15 TCGA-DD-A4ND-01 17 6917669 6917669 C T AC040977.1 Nonsense_Mutation p.W29* 0.19 TCGA-DD-A4ND-01 18 28650775 28650775 T A DSC2 Nonsense_Mutation p.K723* 0.18 TCGA-DD-A4ND-01 18 2939526 2939526 T C LPIN2 Silent p.S258S 0.24 TCGA-DD-A4ND-01 19 14938783 14938783 C A OR7A5 Missense_Mutation p.V91F 0.04 deleterious_low_confidence(0) possibly_damaging(0.66) TCGA-DD-A4ND-01 19 14952139 14952139 A G OR7A10 Missense_Mutation p.V184A 0.11 deleterious_low_confidence(0.01) benign(0.257) TCGA-DD-A4ND-01 19 22940429 22940429 C G ZNF99 Missense_Mutation p.C761S 0.29 deleterious(0.01) benign(0.173) TCGA-DD-A4ND-01 19 35978289 35978289 T A KRTDAP 3'UTR 0.17 TCGA-DD-A4ND-01 19 3789388 3789388 C T MATK 5'UTR 0.33 TCGA-DD-A4ND-01 19 53343429 53343429 G T ZNF468 3'UTR 0.24 TCGA-DD-A4ND-01 1 109794691 109794691 G A CELSR2 Missense_Mutation p.G664S 0.21 tolerated(0.45) probably_damaging(0.979) TCGA-DD-A4ND-01 1 153066128 153066128 C T SPRR2E Missense_Mutation p.E34K 0.25 tolerated_low_confidence(0.08) unknown(0) TCGA-DD-A4ND-01 1 156146462 156146462 G C SEMA4A Missense_Mutation p.A654P 0.24 tolerated(0.09) possibly_damaging(0.766) TCGA-DD-A4ND-01 1 158747373 158747373 G A OR6N2 Missense_Mutation p.A18V 0.19 deleterious(0.01) benign(0.082) TCGA-DD-A4ND-01 1 24383768 24383768 T C MYOM3 3'UTR 0.19 TCGA-DD-A4ND-01 1 46073649 46073649 G T NASP Missense_Mutation p.A356S 0.17 deleterious_low_confidence(0.01) benign(0.132) TCGA-DD-A4ND-01 1 47904363 47904363 G C FOXD2 Missense_Mutation p.V186L 0.17 deleterious(0) possibly_damaging(0.758) TCGA-DD-A4ND-01 1 68153485 68153485 A G GADD45A 3'UTR 0.22 TCGA-DD-A4ND-01 20 20621445 20621445 C A RALGAPA2 Silent p.L150L 0.16 TCGA-DD-A4ND-01 20 52198139 52198139 G C ZNF217 Silent p.T409T 0.15 TCGA-DD-A4ND-01 21 30343736 30343736 C A LTN1 Missense_Mutation p.A327S 0.25 tolerated(0.08) possibly_damaging(0.792) TCGA-DD-A4ND-01 21 37618218 37618218 C T DOPEY2 Silent p.L1314L 0.24 TCGA-DD-A4ND-01 21 45929169 45929169 T G TSPEAR Missense_Mutation p.N556T 0.19 tolerated(0.34) benign(0.079) TCGA-DD-A4ND-01 22 28378887 28378887 C G TTC28 Missense_Mutation p.E2256D 0.35 tolerated_low_confidence(0.14) benign(0.42) TCGA-DD-A4ND-01 22 36902221 36902221 C G FOXRED2 Missense_Mutation p.K83N 0.29 deleterious(0) probably_damaging(1) TCGA-DD-A4ND-01 22 41752683 41752683 G C ZC3H7B Missense_Mutation p.S851T 0.08 tolerated(0.25) probably_damaging(0.979) TCGA-DD-A4ND-01 2 152506778 152506778 C T NEB Missense_Mutation p.R2448H 0.15 probably_damaging(1) TCGA-DD-A4ND-01 2 169757874 169757874 A C G6PC2 Silent p.I11I 0.20 TCGA-DD-A4ND-01 2 176001186 176001186 A G ATF2 5'UTR 0.23 TCGA-DD-A4ND-01 2 69049534 69049534 C T ARHGAP25 Silent p.D421D 0.08 TCGA-DD-A4ND-01 3 126255177 126255182 AGCTCT - CHST13 In_Frame_Del p.K54_Y56delinsN 0.12 TCGA-DD-A4ND-01 3 150916346 150916346 C A GPR171 Silent p.S276S 0.13 TCGA-DD-A4ND-01 4 134072907 134072907 G A PCDH10 Missense_Mutation p.D538N 0.21 tolerated(1) possibly_damaging(0.489) TCGA-DD-A4ND-01 4 164271585 164271585 C A NPY5R Missense_Mutation p.L54I 0.17 tolerated(0.05) possibly_damaging(0.521) TCGA-DD-A4ND-01 4 3318591 3318591 G A RGS12 Missense_Mutation p.V232M 0.20 deleterious(0) probably_damaging(0.999) TCGA-DD-A4ND-01 5 140755726 140755726 C T PCDHGA6 Silent p.Y692Y 0.22 TCGA-DD-A4ND-01 5 6754921 6754921 G A PAPD7 Missense_Mutation p.G498S 0.19 tolerated_low_confidence(0.45) benign(0.001) TCGA-DD-A4ND-01 5 72874667 72874667 G T UTP15 Missense_Mutation p.R379I 0.30 tolerated(0.19) benign(0.11) TCGA-DD-A4ND-01 5 94785850 94785850 C A FAM81B Intron 0.31 TCGA-DD-A4ND-01 6 116937698 116937698 G C RSPH4A 5'UTR 0.30 TCGA-DD-A4ND-01 6 76589582 76589582 G A MYO6 Missense_Mutation p.R708Q 0.17 deleterious(0) unknown(0) TCGA-DD-A4ND-01 7 56049254 56049254 C T GBAS Nonsense_Mutation p.Q123* 0.35 TCGA-DD-A4ND-01 7 77885584 77885584 C A MAGI2 Missense_Mutation p.D575Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-DD-A4ND-01 8 56699053 56699053 A - TGS1 Frame_Shift_Del p.K200Sfs*89 0.26 TCGA-DD-A4ND-01 9 130242224 130242224 G T LRSAM1 Missense_Mutation p.S337I 0.19 tolerated(0.06) benign(0.015) TCGA-DD-A4ND-01 9 6558589 6558589 C A GLDC Silent p.G674G 0.20 TCGA-DD-A4ND-01 9 91926142 91926142 A G CKS2 5'UTR 0.16 TCGA-DD-A4ND-01 X 11162339 11162339 G A ARHGAP6 Missense_Mutation p.S646F 0.21 deleterious(0.01) probably_damaging(0.947) TCGA-DD-A4ND-01 X 119005302 119005302 T A RNF113A Missense_Mutation p.E92V 0.05 tolerated(0.07) benign(0.003) TCGA-DD-A4ND-01 X 135309506 135309506 T C MAP7D3 Silent p.Q657Q 0.16 TCGA-DD-A4ND-01 X 48547190 48547190 G T WAS Missense_Mutation p.G358V 0.33 tolerated(0.33) unknown(0) TCGA-DD-A4ND-01 X 49049852 49049852 C A SYP Silent p.L164L 0.17 TCGA-DD-A4ND-01 X 69478612 69478612 T C P2RY4 Missense_Mutation p.Y288C 0.22 deleterious(0.01) possibly_damaging(0.796) TCGA-DD-A4NE-01 10 124333260 124333260 G T DMBT1 Nonsense_Mutation p.E89* 0.78 TCGA-DD-A4NE-01 10 17026254 17026254 A G CUBN Missense_Mutation p.S1459P 0.38 deleterious(0.01) probably_damaging(0.984) TCGA-DD-A4NE-01 10 22700061 22700070 ATACATCAAC - SPAG6 Frame_Shift_Del p.Y473Vfs*10 0.36 TCGA-DD-A4NE-01 10 75391726 75391726 T C MYOZ1 Missense_Mutation p.I288V 0.04 tolerated(1) benign(0) TCGA-DD-A4NE-01 10 89717712 89717712 C G PTEN Missense_Mutation p.P246R 0.79 deleterious(0.03) benign(0.329) TCGA-DD-A4NE-01 10 98144387 98144387 G A TLL2 Silent p.D717D 0.41 TCGA-DD-A4NE-01 11 40136444 40136444 C T LRRC4C Missense_Mutation p.D467N 0.29 tolerated(0.09) benign(0.003) TCGA-DD-A4NE-01 11 55433208 55433208 A G OR4C6 Missense_Mutation p.D189G 0.32 deleterious_low_confidence(0.01) probably_damaging(0.96) TCGA-DD-A4NE-01 11 56237770 56237770 A G OR5M3 Silent p.D68D 0.15 TCGA-DD-A4NE-01 11 58491955 58491955 C T GLYAT Silent p.L5L 0.28 TCGA-DD-A4NE-01 11 67077629 67077629 C T SSH3 Missense_Mutation p.P501L 0.30 deleterious(0.03) benign(0.027) TCGA-DD-A4NE-01 12 123055417 123055429 TTTCAGATAATTC - KNTC1 Splice_Site p.X621_splice 0.14 TCGA-DD-A4NE-01 12 48577984 48577984 G C C12orf68 Missense_Mutation p.A27P 0.42 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-DD-A4NE-01 12 6927621 6927621 G T CD4 Missense_Mutation p.M397I 0.60 tolerated(0.29) benign(0.005) TCGA-DD-A4NE-01 13 26145823 26145823 T C ATP8A2 Missense_Mutation p.I552T 0.44 deleterious(0) possibly_damaging(0.637) TCGA-DD-A4NE-01 13 48919320 48919321 - A RB1 Frame_Shift_Ins p.F162Lfs*9 0.43 TCGA-DD-A4NE-01 14 19563552 19563552 A G POTEG Intron 0.41 TCGA-DD-A4NE-01 14 25044580 25044580 G - CTSG Frame_Shift_Del p.R32Afs*29 0.33 TCGA-DD-A4NE-01 16 1400190 1400190 C G TSR3 Missense_Mutation p.G191A 0.38 deleterious(0) probably_damaging(0.98) TCGA-DD-A4NE-01 16 30456131 30456131 C T SEPHS2 Missense_Mutation p.M306I 0.45 benign(0.34) TCGA-DD-A4NE-01 16 47622940 47622940 G A PHKB Missense_Mutation p.R332H 0.12 deleterious(0.03) possibly_damaging(0.597) TCGA-DD-A4NE-01 16 89985611 89985611 G A MC1R 5'UTR 0.62 TCGA-DD-A4NE-01 17 10304673 10304673 G A MYH8 Silent p.T1009T 0.46 TCGA-DD-A4NE-01 17 10352333 10352333 C A MYH4 Nonsense_Mutation p.E1405* 0.31 TCGA-DD-A4NE-01 17 45361990 45361990 A G ITGB3 Silent p.A181A 0.39 TCGA-DD-A4NE-01 17 62496261 62496261 T C DDX5 Missense_Mutation p.N542S 0.31 tolerated_low_confidence(0.55) benign(0.008) TCGA-DD-A4NE-01 19 10286294 10286294 G A DNMT1 Silent p.G190G 0.39 TCGA-DD-A4NE-01 19 10286295 10286295 C A DNMT1 Splice_Site p.X190_splice 0.39 TCGA-DD-A4NE-01 19 13936368 13936368 C T ZSWIM4 Silent p.D623D 0.50 TCGA-DD-A4NE-01 19 17758169 17758169 G A UNC13A Missense_Mutation p.A650V 0.54 tolerated(0.31) benign(0.173) TCGA-DD-A4NE-01 1 151688481 151688481 C G CELF3 Missense_Mutation p.A6P 0.43 deleterious(0) probably_damaging(0.946) TCGA-DD-A4NE-01 1 16945481 16945481 G A RP5-1182A14.5 3'Flank 0.16 TCGA-DD-A4NE-01 1 170508682 170508682 C A GORAB Nonsense_Mutation p.C156* 0.22 TCGA-DD-A4NE-01 1 175105078 175105078 G C TNN Splice_Site p.X1143_splice 0.21 TCGA-DD-A4NE-01 1 228444505 228444510 TGCGCA - OBSCN In_Frame_Del p.R1581_M1582del 0.16 TCGA-DD-A4NE-01 1 6257754 6257754 G T RPL22 Nonsense_Mutation p.C25* 0.59 TCGA-DD-A4NE-01 1 6688628 6688628 C T THAP3 Silent p.P48P 0.44 TCGA-DD-A4NE-01 20 34828009 34828009 T A AAR2 Silent p.P73P 0.42 TCGA-DD-A4NE-01 20 49509730 49509730 C T ADNP Missense_Mutation p.M507I 0.32 deleterious(0.01) probably_damaging(0.968) TCGA-DD-A4NE-01 20 62324187 62324187 C T RTEL1 Silent p.D918D 0.52 TCGA-DD-A4NE-01 22 19220768 19220768 C G CLTCL1 Missense_Mutation p.R481P 0.43 deleterious(0) probably_damaging(0.962) TCGA-DD-A4NE-01 22 37271708 37271708 G C NCF4 Missense_Mutation p.G214A 0.46 tolerated(0.07) probably_damaging(0.921) TCGA-DD-A4NE-01 2 120005536 120005536 A T STEAP3 Silent p.T268T 0.45 TCGA-DD-A4NE-01 2 141747101 141747101 C G LRP1B Missense_Mutation p.A924P 0.42 possibly_damaging(0.778) TCGA-DD-A4NE-01 2 160807872 160807872 C A PLA2R1 Missense_Mutation p.W1173C 0.43 deleterious(0) probably_damaging(1) TCGA-DD-A4NE-01 2 17954051 17954051 A G GEN1 Missense_Mutation p.K318R 0.49 tolerated(0.07) benign(0.076) TCGA-DD-A4NE-01 2 223066581 223066581 C T PAX3 Intron 0.77 TCGA-DD-A4NE-01 2 32341263 32341263 T C SPAST Silent p.L360L 0.38 TCGA-DD-A4NE-01 2 36982183 36982183 C T VIT Missense_Mutation p.S132F 0.36 deleterious(0) probably_damaging(0.99) TCGA-DD-A4NE-01 2 74907398 74907399 - G SEMA4F 3'UTR 0.31 TCGA-DD-A4NE-01 2 99012481 99012481 G T CNGA3 Missense_Mutation p.R283L 0.54 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NE-01 3 111831665 111831665 T C C3orf52 Intron 0.12 TCGA-DD-A4NE-01 3 157820590 157820590 C G SHOX2 Silent p.R168R 0.47 TCGA-DD-A4NE-01 3 178952100 178952100 C A PIK3CA Missense_Mutation p.T1052K 0.44 tolerated(0.13) benign(0.433) TCGA-DD-A4NE-01 3 185332412 185332412 G C SENP2 Missense_Mutation p.G332R 0.42 deleterious(0.03) probably_damaging(1) TCGA-DD-A4NE-01 3 21467010 21467010 C T ZNF385D Missense_Mutation p.V276I 0.32 deleterious(0) probably_damaging(0.939) TCGA-DD-A4NE-01 3 38168072 38168072 C T ACAA1 Missense_Mutation p.R249H 0.45 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NE-01 3 57475398 57475398 A T Y_RNA 5'Flank 0.38 TCGA-DD-A4NE-01 3 7620178 7620178 C T GRM7 Missense_Mutation p.P529S 0.37 tolerated(0.15) benign(0.015) TCGA-DD-A4NE-01 4 57244474 57244474 T G AASDH Missense_Mutation p.I170L 0.43 tolerated(0.72) benign(0.001) TCGA-DD-A4NE-01 5 111643179 111643179 C G EPB41L4A Silent p.T36T 0.47 TCGA-DD-A4NE-01 5 122722352 122722353 AT - CEP120 Frame_Shift_Del p.Y480Sfs*12 0.31 TCGA-DD-A4NE-01 5 178408750 178408750 C A GRM6 Nonsense_Mutation p.E848* 0.44 TCGA-DD-A4NE-01 5 43297200 43297200 T C HMGCS1 Missense_Mutation p.I215V 0.44 tolerated(1) benign(0) TCGA-DD-A4NE-01 5 57878942 57878942 A G RAB3C 5'UTR 0.31 TCGA-DD-A4NE-01 5 80628350 80628350 T C ACOT12 Missense_Mutation p.D446G 0.41 tolerated(0.33) benign(0.02) TCGA-DD-A4NE-01 6 100062539 100062539 T C PRDM13 Silent p.P676P 0.25 TCGA-DD-A4NE-01 6 159206580 159206580 G T EZR Silent p.L76L 0.38 TCGA-DD-A4NE-01 6 36652323 36652323 G C CDKN1A Missense_Mutation p.D149H 0.74 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NE-01 7 112723996 112723996 G T GPR85 Missense_Mutation p.Q261K 0.20 tolerated(0.06) benign(0.029) TCGA-DD-A4NE-01 7 138602612 138602612 C A KIAA1549 Missense_Mutation p.S587I 0.47 tolerated(0.08) benign(0.231) TCGA-DD-A4NE-01 7 154876255 154876255 C A HTR5A 3'UTR 0.35 TCGA-DD-A4NE-01 7 4014121 4014121 C T SDK1 Silent p.S646S 0.47 TCGA-DD-A4NE-01 8 61749438 61749438 G A CHD7 Missense_Mutation p.R1351K 0.43 probably_damaging(0.991) TCGA-DD-A4NE-01 8 77618153 77618153 C T ZFHX4 Silent p.G610G 0.56 TCGA-DD-A4NE-01 9 34726986 34726986 C A FAM205A Splice_Site p.X84_splice 0.50 TCGA-DD-A4NE-01 9 86482765 86482765 T G KIF27 Missense_Mutation p.E923A 0.40 deleterious(0.03) possibly_damaging(0.786) TCGA-DD-A4NE-01 X 101623454 101623454 G - NXF2B Frame_Shift_Del p.P241Qfs*3 0.20 TCGA-DD-A4NE-01 X 152243161 152243161 G T PNMA6C 3'UTR 0.43 TCGA-DD-A4NE-01 X 90692611 90692611 C T PABPC5 3'UTR 0.34 TCGA-DD-A4NF-01 10 21805067 21805067 T C SKIDA1 Missense_Mutation p.N562S 0.33 tolerated(0.9) unknown(0) TCGA-DD-A4NF-01 10 22675715 22675715 G T SPAG6 Missense_Mutation p.V169F 0.26 deleterious(0) possibly_damaging(0.903) TCGA-DD-A4NF-01 10 38406925 38406925 G T ZNF37A Missense_Mutation p.Q282H 0.32 tolerated(0.11) possibly_damaging(0.789) TCGA-DD-A4NF-01 10 50857589 50857589 C A CHAT Missense_Mutation p.S473Y 0.47 deleterious(0.01) probably_damaging(0.993) TCGA-DD-A4NF-01 10 83635708 83635708 C A NRG3 Missense_Mutation p.S204R 0.45 tolerated(0.07) benign(0.206) TCGA-DD-A4NF-01 11 111753099 111753099 A T C11orf1 Missense_Mutation p.N18I 0.34 tolerated(0.34) benign(0.029) TCGA-DD-A4NF-01 11 28116256 28116256 G A KIF18A Silent p.H139H 0.33 TCGA-DD-A4NF-01 11 5021109 5021109 G A OR51L1 Silent p.K299K 0.42 TCGA-DD-A4NF-01 11 58607044 58607044 A G GLYATL2 Silent p.Y14Y 0.45 TCGA-DD-A4NF-01 11 61197634 61197634 G T SDHAF2 Missense_Mutation p.V6L 0.19 tolerated_low_confidence(0.28) benign(0) TCGA-DD-A4NF-01 11 64124999 64124999 C T CCDC88B 3'UTR 0.22 TCGA-DD-A4NF-01 11 68458398 68458398 C G GAL Silent p.L105L 0.36 TCGA-DD-A4NF-01 11 92086129 92086129 T C FAT3 Missense_Mutation p.V284A 0.36 benign(0.196) TCGA-DD-A4NF-01 11 95522613 95522613 G T FAM76B Silent p.T10T 0.42 TCGA-DD-A4NF-01 12 111342552 111342552 C T CCDC63 Silent p.P501P 0.33 TCGA-DD-A4NF-01 12 31586176 31586176 C A DENND5B Missense_Mutation p.W673C 0.39 tolerated(0.21) possibly_damaging(0.765) TCGA-DD-A4NF-01 12 3931251 3931251 C A PARP11 Missense_Mutation p.Q139H 0.43 deleterious(0) probably_damaging(0.991) TCGA-DD-A4NF-01 12 46601366 46601366 C T SLC38A1 Missense_Mutation p.G143S 0.08 deleterious(0) probably_damaging(1) TCGA-DD-A4NF-01 12 57618996 57618996 T C NXPH4 Silent p.H131H 0.26 TCGA-DD-A4NF-01 13 23907796 23907796 G A SACS Silent p.L3407L 0.34 TCGA-DD-A4NF-01 13 24864810 24864810 T C SPATA13 Silent p.Y956Y 0.41 TCGA-DD-A4NF-01 13 31205167 31205167 A T USPL1 Missense_Mutation p.N142Y 0.31 deleterious(0.02) benign(0.21) TCGA-DD-A4NF-01 13 58298754 58298754 G T PCDH17 Nonsense_Mutation p.E936* 0.43 TCGA-DD-A4NF-01 13 95364066 95364066 G A SOX21 Missense_Mutation p.R80W 0.41 deleterious(0) probably_damaging(1) TCGA-DD-A4NF-01 14 65260364 65260364 G A SPTB Missense_Mutation p.L673F 0.42 tolerated(0.47) probably_damaging(0.997) TCGA-DD-A4NF-01 14 69522154 69522154 C A DCAF5 Missense_Mutation p.A417S 0.47 deleterious(0.03) probably_damaging(0.987) TCGA-DD-A4NF-01 14 75585605 75585605 C A NEK9 Missense_Mutation p.K186N 0.11 deleterious(0) probably_damaging(0.993) TCGA-DD-A4NF-01 15 24923341 24923341 C A NPAP1 Missense_Mutation p.A776D 0.39 tolerated(0.31) benign(0.061) TCGA-DD-A4NF-01 15 25924907 25924907 C T ATP10A Missense_Mutation p.V1361I 0.11 deleterious(0.03) benign(0.028) TCGA-DD-A4NF-01 15 28491165 28491165 T C HERC2 Missense_Mutation p.K1147E 0.43 benign(0.004) TCGA-DD-A4NF-01 15 32930159 32930159 G A ARHGAP11A 3'UTR 0.48 TCGA-DD-A4NF-01 15 64508895 64508895 C T CSNK1G1 Missense_Mutation p.V104M 0.43 deleterious(0) probably_damaging(1) TCGA-DD-A4NF-01 15 72189982 72189982 G C MYO9A Missense_Mutation p.S1621C 0.43 deleterious_low_confidence(0.03) benign(0.005) TCGA-DD-A4NF-01 15 91346865 91346865 A G BLM Missense_Mutation p.D1158G 0.32 deleterious(0) probably_damaging(0.967) TCGA-DD-A4NF-01 16 1545384 1545384 G C TELO2 Missense_Mutation p.A125P 0.46 deleterious(0.02) benign(0.391) TCGA-DD-A4NF-01 16 2026901 2026901 C T TBL3 Missense_Mutation p.T460I 0.34 tolerated(0.22) benign(0.001) TCGA-DD-A4NF-01 16 29994582 29994582 C T TAOK2 Missense_Mutation p.R397W 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.586) TCGA-DD-A4NF-01 16 49671538 49671538 T G ZNF423 Missense_Mutation p.N509H 0.37 tolerated(0.19) benign(0.192) TCGA-DD-A4NF-01 16 57197926 57197926 A T FAM192A Missense_Mutation p.D178E 0.41 tolerated(0.95) benign(0.001) TCGA-DD-A4NF-01 16 601376 601376 G A CAPN15 Missense_Mutation p.R714H 0.31 deleterious(0.03) probably_damaging(1) TCGA-DD-A4NF-01 16 70896085 70896085 G C HYDIN Missense_Mutation p.H3881Q 0.35 possibly_damaging(0.767) TCGA-DD-A4NF-01 16 7568314 7568314 C T RBFOX1 Silent p.L85L 0.44 TCGA-DD-A4NF-01 16 81925146 81925146 G A PLCG2 Missense_Mutation p.D313N 0.34 tolerated(0.15) benign(0.032) TCGA-DD-A4NF-01 17 12852526 12852526 G A ARHGAP44 Missense_Mutation p.V311M 0.39 tolerated(0.16) benign(0.039) TCGA-DD-A4NF-01 17 15234365 15234365 T C TEKT3 Missense_Mutation p.R180G 0.34 deleterious(0.02) possibly_damaging(0.697) TCGA-DD-A4NF-01 17 30814788 30814788 G A CDK5R1 Silent p.L50L 0.35 TCGA-DD-A4NF-01 17 43227700 43227700 T C HEXIM1 3'UTR 0.44 TCGA-DD-A4NF-01 17 72281284 72281284 C T DNAI2 Missense_Mutation p.R97W 0.05 deleterious(0) probably_damaging(0.995) TCGA-DD-A4NF-01 17 7726895 7726895 G T DNAH2 Missense_Mutation p.D3760Y 0.37 probably_damaging(0.995) TCGA-DD-A4NF-01 17 79414175 79414175 G T RP11-1055B8.7 Missense_Mutation p.A1093S 0.42 benign(0.115) TCGA-DD-A4NF-01 18 14478332 14478332 C T CXADRP3 RNA 0.26 TCGA-DD-A4NF-01 19 11942559 11942559 C G ZNF440 Missense_Mutation p.H190D 0.45 deleterious(0) probably_damaging(0.988) TCGA-DD-A4NF-01 19 1271158 1271158 G C CIRBP Missense_Mutation p.R41S 0.32 deleterious(0) probably_damaging(0.988) TCGA-DD-A4NF-01 19 12969450 12969450 G A MAST1 Silent p.V421V 0.40 TCGA-DD-A4NF-01 19 1506875 1506875 C T ADAMTSL5 Missense_Mutation p.R302Q 0.41 tolerated(0.22) benign(0.01) TCGA-DD-A4NF-01 19 19655986 19655986 G A CILP2 Missense_Mutation p.V878M 0.46 deleterious(0) possibly_damaging(0.729) TCGA-DD-A4NF-01 19 22362974 22362974 G C ZNF676 Missense_Mutation p.S515R 0.48 tolerated(0.22) benign(0.313) TCGA-DD-A4NF-01 19 41133674 41133674 C T LTBP4 Silent p.T1543T 0.77 TCGA-DD-A4NF-01 19 47861354 47861354 C T DHX34 Silent p.L417L 0.47 TCGA-DD-A4NF-01 19 47885451 47885451 C A DHX34 3'UTR 0.30 TCGA-DD-A4NF-01 19 51857606 51857606 C T ETFB Missense_Mutation p.C96Y 0.43 deleterious_low_confidence(0.01) benign(0.012) TCGA-DD-A4NF-01 19 9085930 9085930 A T MUC16 Missense_Mutation p.M1962K 0.33 unknown(0) TCGA-DD-A4NF-01 1 11008624 11008624 G - C1orf127 Frame_Shift_Del p.P523Rfs*18 0.09 TCGA-DD-A4NF-01 1 110560140 110560140 T A AHCYL1 Silent p.A329A 0.30 TCGA-DD-A4NF-01 1 153005170 153005170 T C SPRR1B 3'UTR 0.27 TCGA-DD-A4NF-01 1 158604337 158604337 G A SPTA1 Missense_Mutation p.T1854I 0.42 tolerated(0.18) benign(0.134) TCGA-DD-A4NF-01 1 158746653 158746653 A T OR6N2 Missense_Mutation p.M258K 0.25 deleterious(0.01) probably_damaging(0.975) TCGA-DD-A4NF-01 1 160165717 160165717 G A CASQ1 Missense_Mutation p.E228K 0.16 deleterious(0) probably_damaging(0.946) TCGA-DD-A4NF-01 1 165386378 165386378 C A RXRG Silent p.T174T 0.20 TCGA-DD-A4NF-01 1 197316508 197316508 C T CRB1 Missense_Mutation p.T296I 0.17 tolerated(0.2) benign(0.027) TCGA-DD-A4NF-01 1 201282409 201282409 G T PKP1 Missense_Mutation p.G141V 0.42 deleterious(0.01) probably_damaging(1) TCGA-DD-A4NF-01 1 205225489 205225489 T C TMCC2 Intron 0.14 TCGA-DD-A4NF-01 1 207940538 207940538 A C CD46 Missense_Mutation p.K285T 0.41 deleterious(0) probably_damaging(0.989) TCGA-DD-A4NF-01 1 225594411 225594411 T A LBR Missense_Mutation p.N480Y 0.42 tolerated(0.15) benign(0.03) TCGA-DD-A4NF-01 1 228451986 228451986 G T OBSCN Silent p.V1769V 0.53 TCGA-DD-A4NF-01 1 228467000 228467000 G T OBSCN Silent p.T2846T 0.19 TCGA-DD-A4NF-01 1 248551789 248551789 A G OR2T6 Missense_Mutation p.N294D 0.19 deleterious(0) probably_damaging(0.983) TCGA-DD-A4NF-01 1 248737387 248737387 G C OR2T34 Silent p.T224T 0.23 TCGA-DD-A4NF-01 1 44424562 44424562 G A IPO13 Splice_Site p.X676_splice 0.34 TCGA-DD-A4NF-01 1 46165621 46165621 C T IPP 3'UTR 0.36 TCGA-DD-A4NF-01 1 65270416 65270416 G C RAVER2 Intron 0.38 TCGA-DD-A4NF-01 1 68910330 68910330 C T RPE65 Missense_Mutation p.E127K 0.29 tolerated(0.45) possibly_damaging(0.65) TCGA-DD-A4NF-01 1 82456867 82456867 A G LPHN2 3'UTR 0.56 TCGA-DD-A4NF-01 20 13145641 13145641 A G SPTLC3 3'UTR 0.46 TCGA-DD-A4NF-01 20 36937389 36937389 G T BPI Silent p.V105V 0.42 TCGA-DD-A4NF-01 20 42788302 42788302 G C JPH2 Silent p.R375R 0.19 TCGA-DD-A4NF-01 20 61296307 61296307 G A SLCO4A1 Silent p.K381K 0.05 TCGA-DD-A4NF-01 21 35166772 35166772 G T ITSN1 Missense_Mutation p.R651I 0.33 deleterious(0.01) benign(0.296) TCGA-DD-A4NF-01 21 42617961 42617961 G A BACE2 Missense_Mutation p.V319M 0.36 deleterious(0.03) possibly_damaging(0.75) TCGA-DD-A4NF-01 21 9908253 9908253 A C TEKT4P2 RNA 0.44 TCGA-DD-A4NF-01 22 25331243 25331243 A G TMEM211 3'UTR 0.39 TCGA-DD-A4NF-01 22 32302445 32302445 A G DEPDC5 Missense_Mutation p.T1583A 0.05 tolerated(0.21) benign(0) TCGA-DD-A4NF-01 22 50968009 50968009 G A TYMP Nonsense_Mutation p.R44* 0.40 TCGA-DD-A4NF-01 2 131486786 131486786 T A GPR148 Missense_Mutation p.L21H 0.35 tolerated(0.13) benign(0.008) TCGA-DD-A4NF-01 2 133540419 133540419 G C NCKAP5 Missense_Mutation p.S1322C 0.06 tolerated(0.18) probably_damaging(0.957) TCGA-DD-A4NF-01 2 177053978 177053978 G A HOXD1 Missense_Mutation p.G150D 0.13 deleterious(0.01) benign(0.274) TCGA-DD-A4NF-01 2 210841642 210841642 G A UNC80 Silent p.L2860L 0.34 TCGA-DD-A4NF-01 2 216003042 216003042 G T ABCA12 5'UTR 0.62 TCGA-DD-A4NF-01 2 228881311 228881311 G T SPHKAP Nonsense_Mutation p.S1420* 0.42 TCGA-DD-A4NF-01 2 240056082 240056082 G A HDAC4 Missense_Mutation p.L385F 0.44 tolerated(0.71) benign(0.236) TCGA-DD-A4NF-01 2 37256043 37256043 C T HEATR5B Missense_Mutation p.G1128R 0.46 tolerated(0.18) benign(0.034) TCGA-DD-A4NF-01 2 43980783 43980783 G A PLEKHH2 Missense_Mutation p.G1227R 0.36 deleterious(0.01) probably_damaging(0.949) TCGA-DD-A4NF-01 2 90121662 90121662 A T IGKV1D-17 Missense_Mutation p.D2V 0.42 deleterious_low_confidence(0) possibly_damaging(0.602) TCGA-DD-A4NF-01 3 130098358 130098358 G T COL6A5 Missense_Mutation p.Q255H 0.52 deleterious(0.01) probably_damaging(0.986) TCGA-DD-A4NF-01 3 151017965 151017965 T C GPR87 5'UTR 0.57 TCGA-DD-A4NF-01 3 152555714 152555714 T A P2RY1 3'UTR 0.46 TCGA-DD-A4NF-01 3 164724614 164724614 G T SI Missense_Mutation p.P1466T 0.04 deleterious(0.01) probably_damaging(0.988) TCGA-DD-A4NF-01 3 183217548 183217548 C A KLHL6 Missense_Mutation p.G326V 0.39 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NF-01 3 41266097 41266097 G T CTNNB1 Missense_Mutation p.D32Y 0.37 deleterious(0) probably_damaging(0.992) TCGA-DD-A4NF-01 3 52360896 52360896 C G DNAH1 Missense_Mutation p.L243V 0.25 benign(0.059) TCGA-DD-A4NF-01 3 78688976 78688976 G T ROBO1 Missense_Mutation p.N985K 0.39 tolerated(0.95) probably_damaging(0.968) TCGA-DD-A4NF-01 4 103912818 103912818 T C SLC9B1 Silent p.Q17Q 0.47 TCGA-DD-A4NF-01 4 109084858 109084858 C T LEF1 Splice_Site p.X94_splice 0.27 TCGA-DD-A4NF-01 4 183812473 183812473 G A DCTD 3'UTR 0.40 TCGA-DD-A4NF-01 4 184182073 184182073 A G WWC2 Missense_Mutation p.S433G 0.39 deleterious(0) probably_damaging(0.993) TCGA-DD-A4NF-01 4 20512134 20512134 A G SLIT2 Missense_Mutation p.T311A 0.21 tolerated(0.62) benign(0) TCGA-DD-A4NF-01 4 4283593 4283593 T C LYAR Missense_Mutation p.I52V 0.44 tolerated(0.18) benign(0.107) TCGA-DD-A4NF-01 4 42965023 42965023 C A GRXCR1 Missense_Mutation p.R167S 0.49 tolerated(0.13) probably_damaging(0.999) TCGA-DD-A4NF-01 4 69795408 69795408 G C UGT2A3 3'UTR 0.21 TCGA-DD-A4NF-01 4 89039368 89039368 G C ABCG2 Missense_Mutation p.P245R 0.40 deleterious(0) probably_damaging(0.995) TCGA-DD-A4NF-01 4 90756778 90756778 C T SNCA Missense_Mutation p.G14E 0.39 deleterious(0) probably_damaging(1) TCGA-DD-A4NF-01 5 140201921 140201921 A C PCDHA5 Missense_Mutation p.E187D 0.42 tolerated_low_confidence(0.22) benign(0.016) TCGA-DD-A4NF-01 5 140264081 140264081 G T PCDHA13 Missense_Mutation p.S743I 0.32 deleterious_low_confidence(0) benign(0.083) TCGA-DD-A4NF-01 5 140594941 140594941 G T PCDHB13 Nonsense_Mutation p.E416* 0.38 TCGA-DD-A4NF-01 5 150911280 150911280 C A FAT2 Missense_Mutation p.V3227L 0.62 benign(0.174) TCGA-DD-A4NF-01 5 172197268 172197268 T G DUSP1 Missense_Mutation p.S137R 0.39 tolerated(0.16) benign(0.027) TCGA-DD-A4NF-01 5 178451990 178451990 C A ZNF879 5'UTR 0.13 TCGA-DD-A4NF-01 5 178451991 178451991 A G ZNF879 5'UTR 0.12 TCGA-DD-A4NF-01 5 70751716 70751716 G T BDP1 Missense_Mutation p.R4S 0.47 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NF-01 5 96342142 96342142 A G LNPEP Missense_Mutation p.H653R 0.35 deleterious(0) benign(0.197) TCGA-DD-A4NF-01 6 101296578 101296578 T C ASCC3 Missense_Mutation p.T83A 0.45 tolerated(0.58) benign(0) TCGA-DD-A4NF-01 6 24714570 24714570 A G C6orf62 Silent p.S135S 0.29 TCGA-DD-A4NF-01 6 28134285 28134285 A C ZNF192P1 RNA 0.37 TCGA-DD-A4NF-01 6 42832697 42832697 C A GLTSCR1L Missense_Mutation p.S918Y 0.40 tolerated_low_confidence(0.86) benign(0.006) TCGA-DD-A4NF-01 6 49698949 49698949 A G CRISP3 Silent p.N202N 0.41 TCGA-DD-A4NF-01 6 76595796 76595796 G A MYO6 Missense_Mutation p.R831K 0.44 tolerated(1) unknown(0) TCGA-DD-A4NF-01 6 84798909 84798909 C G MRAP2 Missense_Mutation p.N109K 0.39 tolerated(0.18) benign(0.196) TCGA-DD-A4NF-01 7 111634195 111634195 A T DOCK4 Missense_Mutation p.Y104N 0.30 deleterious(0) benign(0.439) TCGA-DD-A4NF-01 7 139824552 139824552 G A KDM7A Missense_Mutation p.T307I 0.31 deleterious(0) probably_damaging(0.915) TCGA-DD-A4NF-01 7 148703056 148703056 C T PDIA4 Silent p.K407K 0.32 TCGA-DD-A4NF-01 7 45124284 45124284 C G NACAD Missense_Mutation p.A499P 0.33 tolerated(0.05) possibly_damaging(0.651) TCGA-DD-A4NF-01 7 47930177 47930177 G A PKD1L1 Missense_Mutation p.R880W 0.37 deleterious(0.01) possibly_damaging(0.72) TCGA-DD-A4NF-01 7 53103689 53103689 G T POM121L12 Missense_Mutation p.G109W 0.36 deleterious(0) probably_damaging(0.991) TCGA-DD-A4NF-01 7 75615486 75615486 C G POR Missense_Mutation p.Q609E 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-DD-A4NF-01 7 83610674 83610674 C A SEMA3A Missense_Mutation p.G539C 0.31 deleterious(0) probably_damaging(0.959) TCGA-DD-A4NF-01 7 92935245 92935245 G A CCDC132 Missense_Mutation p.G520S 0.34 tolerated(0.5) benign(0.001) TCGA-DD-A4NF-01 8 110393732 110393732 A G PKHD1L1 Silent p.T99T 0.24 TCGA-DD-A4NF-01 8 133769495 133769495 G A TMEM71 Missense_Mutation p.T29M 0.30 tolerated(0.12) possibly_damaging(0.847) TCGA-DD-A4NF-01 8 38831805 38831805 C T HTRA4 Missense_Mutation p.T8I 0.41 deleterious_low_confidence(0.03) benign(0) TCGA-DD-A4NF-01 8 48697806 48697806 A C PRKDC Missense_Mutation p.F3658V 0.41 benign(0.193) TCGA-DD-A4NF-01 8 48874204 48874204 G A MCM4 Missense_Mutation p.V67M 0.44 tolerated(0.28) benign(0.075) TCGA-DD-A4NF-01 8 69032483 69032483 A G PREX2 Missense_Mutation p.D1186G 0.45 deleterious(0) benign(0.02) TCGA-DD-A4NF-01 8 70591818 70591818 G A SLCO5A1 Missense_Mutation p.R607C 0.26 deleterious(0) probably_damaging(0.964) TCGA-DD-A4NF-01 8 73480055 73480055 G - KCNB2 Frame_Shift_Del p.S30Afs*53 0.37 TCGA-DD-A4NF-01 8 87229802 87229802 A T SLC7A13 Nonsense_Mutation p.L359* 0.27 TCGA-DD-A4NF-01 8 95892419 95892419 G A INTS8 Missense_Mutation p.R982K 0.22 deleterious(0) probably_damaging(0.987) TCGA-DD-A4NF-01 9 134351321 134351322 - G PRRC2B Frame_Shift_Ins p.F1271Lfs*2 0.23 TCGA-DD-A4NF-01 9 139702159 139702170 CCTGCTTTGCTA - CCDC183 3'UTR 0.21 TCGA-DD-A4NF-01 9 139916820 139916820 G A ABCA2 Missense_Mutation p.R184C 0.28 deleterious(0.05) possibly_damaging(0.764) TCGA-DD-A4NF-01 9 27566949 27566949 C G C9orf72 Missense_Mutation p.G57A 0.39 tolerated(0.11) possibly_damaging(0.797) TCGA-DD-A4NF-01 9 34622422 34622422 C G ARID3C Missense_Mutation p.V324L 0.25 tolerated(0.39) benign(0.085) TCGA-DD-A4NF-01 9 5164195 5164195 C A INSL6 Missense_Mutation p.K120N 0.31 deleterious(0.03) probably_damaging(0.937) TCGA-DD-A4NF-01 9 67786112 67786112 T C FAM27E3 Missense_Mutation p.Q48R 0.48 tolerated_low_confidence(0.13) possibly_damaging(0.617) TCGA-DD-A4NF-01 9 72879295 72879295 G T SMC5 Silent p.S87S 0.39 TCGA-DD-A4NF-01 X 105011411 105011411 C A IL1RAPL2 Missense_Mutation p.F606L 0.86 tolerated_low_confidence(0.07) benign(0.005) TCGA-DD-A4NF-01 X 111874536 111874536 C T LHFPL1 3'UTR 0.34 TCGA-DD-A4NF-01 X 125685361 125685361 G A DCAF12L1 Missense_Mutation p.L411F 0.47 deleterious(0.04) possibly_damaging(0.835) TCGA-DD-A4NF-01 X 153129931 153129931 T C L1CAM Silent p.E1056E 0.48 TCGA-DD-A4NF-01 X 22117127 22117127 G A PHEX Missense_Mutation p.D313N 0.61 tolerated(1) benign(0.362) TCGA-DD-A4NF-01 X 50376662 50376662 G A SHROOM4 Missense_Mutation p.P804L 0.78 deleterious(0.02) benign(0.282) TCGA-DD-A4NF-01 X 54022132 54022132 C T PHF8 Silent p.L475L 0.71 TCGA-DD-A4NF-01 X 79698052 79698052 G A FAM46D Missense_Mutation p.R5K 0.89 deleterious(0.02) benign(0.445) TCGA-DD-A4NG-01 10 14862095 14862095 T C CDNF Missense_Mutation p.I150V 0.25 tolerated(0.05) benign(0.259) TCGA-DD-A4NG-01 10 14951131 14951131 C A DCLRE1C Missense_Mutation p.C452F 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DD-A4NG-01 10 4888063 4888063 T A AKR1E2 Intron 0.28 TCGA-DD-A4NG-01 11 117789359 117789359 G A TMPRSS13 Silent p.G72G 0.42 TCGA-DD-A4NG-01 11 11987381 11987381 T A DKK3 Missense_Mutation p.S269C 0.29 deleterious(0.01) possibly_damaging(0.784) TCGA-DD-A4NG-01 11 122774639 122774639 A G C11orf63 Silent p.Q117Q 0.35 TCGA-DD-A4NG-01 11 1267292 1267292 C A MUC5B Missense_Mutation p.S3061Y 0.30 unknown(0) TCGA-DD-A4NG-01 11 33308240 33308240 G A HIPK3 Missense_Mutation p.V94I 0.31 tolerated(0.22) benign(0.006) TCGA-DD-A4NG-01 11 5529136 5529136 C A UBQLN3 Silent p.G551G 0.28 TCGA-DD-A4NG-01 11 6567458 6567458 T C DNHD1 Silent p.Y1763Y 0.27 TCGA-DD-A4NG-01 11 68854594 68854594 G A TPCN2 Silent p.K700K 0.31 TCGA-DD-A4NG-01 12 121151187 121151187 T G UNC119B Missense_Mutation p.S119A 0.33 tolerated(0.27) benign(0.001) TCGA-DD-A4NG-01 12 121783834 121783834 C - ANAPC5 Frame_Shift_Del p.G133Vfs*7 0.16 TCGA-DD-A4NG-01 12 1953666 1953666 C T CACNA2D4 Missense_Mutation p.S791N 0.37 tolerated(0.89) benign(0.008) TCGA-DD-A4NG-01 12 26217450 26217450 C A RASSF8 Silent p.T41T 0.30 TCGA-DD-A4NG-01 12 27908279 27908279 G A MRPS35 Missense_Mutation p.E290K 0.39 tolerated(0.4) benign(0.015) TCGA-DD-A4NG-01 12 31249813 31249813 G A DDX11 Missense_Mutation p.E551K 0.36 tolerated(0.17) benign(0.374) TCGA-DD-A4NG-01 12 6968631 6968631 T A USP5 Intron 0.41 TCGA-DD-A4NG-01 12 7249174 7249174 G A C1RL Missense_Mutation p.T426M 0.34 tolerated(0.44) benign(0.124) TCGA-DD-A4NG-01 12 78225216 78225216 A G NAV3 5'UTR 0.26 TCGA-DD-A4NG-01 12 88479875 88479875 T G CEP290 Missense_Mutation p.I1460L 0.33 benign(0.011) TCGA-DD-A4NG-01 12 93835657 93835657 C T UBE2N Missense_Mutation p.A2T 0.41 tolerated_low_confidence(0.1) benign(0.003) TCGA-DD-A4NG-01 13 28626760 28626760 T C FLT3 Missense_Mutation p.Q179R 0.48 tolerated(0.49) benign(0.002) TCGA-DD-A4NG-01 13 32850640 32850640 G A FRY Missense_Mutation p.V2776M 0.42 tolerated(0.17) probably_damaging(0.968) TCGA-DD-A4NG-01 15 39886581 39886581 G A THBS1 Missense_Mutation p.G1149R 0.30 deleterious(0) probably_damaging(1) TCGA-DD-A4NG-01 16 81142804 81142804 C T RNU6-1191P 5'Flank 0.27 TCGA-DD-A4NG-01 17 28656378 28656378 G A TMIGD1 Silent p.S84S 0.27 TCGA-DD-A4NG-01 17 39596873 39596873 T C KRT38 Missense_Mutation p.N101D 0.45 deleterious(0.02) possibly_damaging(0.608) TCGA-DD-A4NG-01 17 61315195 61315196 - A TANC2 Frame_Shift_Ins p.N191Kfs*13 0.18 TCGA-DD-A4NG-01 19 15484748 15484748 C A AKAP8 Missense_Mutation p.A74S 0.29 tolerated(0.39) benign(0.014) TCGA-DD-A4NG-01 19 17443815 17443815 G A ANO8 Silent p.R170R 0.34 TCGA-DD-A4NG-01 19 40742001 40742001 T C AKT2 Missense_Mutation p.D324G 0.27 tolerated(0.07) probably_damaging(1) TCGA-DD-A4NG-01 19 42837807 42837807 G T MEGF8 Nonsense_Mutation p.E80* 0.30 TCGA-DD-A4NG-01 19 55598913 55598913 A T EPS8L1 Silent p.S701S 0.30 TCGA-DD-A4NG-01 19 6693481 6693481 C A C3 Missense_Mutation p.A1058S 0.31 tolerated(0.07) possibly_damaging(0.631) TCGA-DD-A4NG-01 1 108116734 108116734 C A VAV3 Missense_Mutation p.D813Y 0.47 deleterious(0) probably_damaging(0.996) TCGA-DD-A4NG-01 1 1257366 1257366 T G CPSF3L Splice_Site 0.52 TCGA-DD-A4NG-01 1 151131353 151131353 C T TNFAIP8L2 Silent p.I60I 0.33 TCGA-DD-A4NG-01 1 152278798 152278798 C T FLG Missense_Mutation p.G2855E 0.27 possibly_damaging(0.466) TCGA-DD-A4NG-01 1 153610685 153610685 G T CHTOP Intron 0.58 TCGA-DD-A4NG-01 1 158301185 158301185 G T CD1B Missense_Mutation p.A10D 0.22 tolerated(0.16) unknown(0) TCGA-DD-A4NG-01 1 159175737 159175737 A T DARC Missense_Mutation p.T172S 0.22 tolerated(0.29) benign(0.011) TCGA-DD-A4NG-01 1 178822882 178822882 A G ANGPTL1 Silent p.H288H 0.16 TCGA-DD-A4NG-01 1 181767517 181767517 G A CACNA1E Silent p.P2163P 0.30 TCGA-DD-A4NG-01 1 218609331 218609331 A G TGFB2 Silent p.T286T 0.29 TCGA-DD-A4NG-01 1 224377758 224377758 A T DEGS1 Missense_Mutation p.I188F 0.24 tolerated(0.21) benign(0.049) TCGA-DD-A4NG-01 1 43076659 43076659 G A CCDC30 Missense_Mutation p.S465N 0.24 tolerated(0.31) benign(0.05) TCGA-DD-A4NG-01 20 2732565 2732565 C T EBF4 Intron 0.10 TCGA-DD-A4NG-01 20 34263098 34263098 G A NFS1 Missense_Mutation p.R273W 0.51 deleterious(0) probably_damaging(0.998) TCGA-DD-A4NG-01 20 35683995 35683995 C T RBL1 Missense_Mutation p.M476I 0.47 tolerated(1) benign(0.012) TCGA-DD-A4NG-01 20 4764745 4764745 A G RASSF2 3'UTR 0.39 TCGA-DD-A4NG-01 22 22516956 22516956 G A IGLV4-60 Missense_Mutation p.G82R 0.30 deleterious(0.03) benign(0.352) TCGA-DD-A4NG-01 22 22985207 22985207 G T GGTLC2 5'Flank 0.32 TCGA-DD-A4NG-01 2 15378653 15378653 G C NBAS Nonsense_Mutation p.S1961* 0.42 TCGA-DD-A4NG-01 2 179499955 179499955 T G TTN Missense_Mutation p.E13987D 0.33 TCGA-DD-A4NG-01 2 21229380 21229381 - A APOB Frame_Shift_Ins p.V3454Cfs*8 0.21 TCGA-DD-A4NG-01 2 219674376 219674376 C T CYP27A1 Missense_Mutation p.A111V 0.36 tolerated(0.14) benign(0.304) TCGA-DD-A4NG-01 2 37414600 37414600 C A SULT6B1 Missense_Mutation p.W32C 0.26 deleterious(0) probably_damaging(1) TCGA-DD-A4NG-01 2 48958372 48958372 A C LHCGR Missense_Mutation p.I76R 0.36 tolerated(0.41) benign(0.251) TCGA-DD-A4NG-01 2 54876897 54876897 T G SPTBN1 Missense_Mutation p.L1783R 0.30 deleterious(0) probably_damaging(1) TCGA-DD-A4NG-01 2 70316042 70316043 - A PCBP1 3'UTR 0.21 TCGA-DD-A4NG-01 2 9022691 9022691 C T MBOAT2 Missense_Mutation p.M152I 0.31 tolerated(0.29) benign(0.084) TCGA-DD-A4NG-01 3 121416717 121416717 G A GOLGB1 Nonsense_Mutation p.Q885* 0.31 TCGA-DD-A4NG-01 3 129823040 129823040 C T FAM86HP RNA 0.30 TCGA-DD-A4NG-01 3 173998531 173998531 G T NLGN1 Missense_Mutation p.R637I 0.33 tolerated(0.44) possibly_damaging(0.571) TCGA-DD-A4NG-01 3 178984440 178984440 C T KCNMB3 Missense_Mutation p.G20E 0.41 deleterious(0.04) possibly_damaging(0.736) TCGA-DD-A4NG-01 3 184947229 184947229 T C EHHADH Missense_Mutation p.I152V 0.36 tolerated(0.06) benign(0.356) TCGA-DD-A4NG-01 3 30819694 30819694 C A GADL1 Nonsense_Mutation p.E457* 0.33 TCGA-DD-A4NG-01 3 33444346 33444346 G C UBP1 Silent p.S326S 0.08 TCGA-DD-A4NG-01 3 3888638 3888638 C T LRRN1 3'UTR 0.12 TCGA-DD-A4NG-01 3 43381915 43381915 C G SNRK Missense_Mutation p.L290V 0.32 tolerated(0.15) benign(0.175) TCGA-DD-A4NG-01 3 52256679 52256679 G T TLR9 Missense_Mutation p.D705E 0.38 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NG-01 3 98109590 98109590 G C OR5K3 Silent p.L27L 0.26 TCGA-DD-A4NG-01 3 98487331 98487331 A C ST3GAL6 Missense_Mutation p.Y16S 0.35 deleterious(0.01) possibly_damaging(0.776) TCGA-DD-A4NG-01 4 104066455 104066455 T C CENPE Missense_Mutation p.I1537V 0.30 benign(0.001) TCGA-DD-A4NG-01 4 165879803 165879803 T C FAM218A 3'UTR 0.35 TCGA-DD-A4NG-01 4 4199475 4199475 C A OTOP1 Silent p.G362G 0.30 TCGA-DD-A4NG-01 5 11117631 11117631 A T CTNND2 Nonsense_Mutation p.C736* 0.32 TCGA-DD-A4NG-01 5 121488840 121488840 C A ZNF474 3'UTR 0.35 TCGA-DD-A4NG-01 5 156918883 156918885 AAG - ADAM19 In_Frame_Del p.F649del 0.29 TCGA-DD-A4NG-01 5 169535659 169535659 A G FOXI1 3'UTR 0.38 TCGA-DD-A4NG-01 5 179150758 179150758 T A CANX Missense_Mutation p.I499N 0.34 deleterious(0.01) possibly_damaging(0.526) TCGA-DD-A4NG-01 5 34914910 34914910 T C RAD1 Missense_Mutation p.I30V 0.27 tolerated(0.17) benign(0.005) TCGA-DD-A4NG-01 6 117019926 117019927 AA - KPNA5 Frame_Shift_Del p.K134Ifs*3 0.49 TCGA-DD-A4NG-01 6 13618350 13618350 T C NOL7 Missense_Mutation p.V160A 0.22 tolerated(0.75) benign(0.011) TCGA-DD-A4NG-01 6 32063403 32063403 C T TNXB Missense_Mutation p.E743K 0.17 possibly_damaging(0.564) TCGA-DD-A4NG-01 6 4935914 4935914 G C CDYL Missense_Mutation p.R286T 0.66 tolerated(0.07) benign(0.12) TCGA-DD-A4NG-01 7 110764538 110764538 A - LRRN3 Frame_Shift_Del p.I571Yfs*13 0.20 TCGA-DD-A4NG-01 7 123334793 123334793 C T WASL Missense_Mutation p.V268I 0.22 tolerated(0.12) unknown(0) TCGA-DD-A4NG-01 7 99754066 99754066 T A C7orf43 Missense_Mutation p.N395Y 0.27 deleterious(0) probably_damaging(0.955) TCGA-DD-A4NG-01 8 121824005 121824005 C A SNTB1 Nonsense_Mutation p.E27* 0.09 TCGA-DD-A4NG-01 9 100618846 100618846 G T FOXE1 3'UTR 0.36 TCGA-DD-A4NG-01 9 21008070 21008070 G A PTPLAD2 Missense_Mutation p.S189F 0.22 deleterious(0.01) probably_damaging(0.941) TCGA-DD-A4NG-01 9 21008109 21008109 G A PTPLAD2 Missense_Mutation p.S176L 0.25 tolerated(0.07) benign(0.059) TCGA-DD-A4NG-01 9 96233651 96233652 - T FAM120A Frame_Shift_Ins p.A237Cfs*11 0.19 TCGA-DD-A4NG-01 X 102334288 102334288 G A NXF3 Missense_Mutation p.T445M 0.62 tolerated(0.08) possibly_damaging(0.705) TCGA-DD-A4NG-01 X 70464153 70464153 G A ZMYM3 Silent p.G1093G 0.07 TCGA-DD-A4NH-01 10 102035202 102035202 C A BLOC1S2 3'UTR 0.18 TCGA-DD-A4NH-01 10 102035203 102035203 C A BLOC1S2 3'UTR 0.18 TCGA-DD-A4NH-01 10 123844727 123844727 G T TACC2 Missense_Mutation p.Q904H 0.18 benign(0.081) TCGA-DD-A4NH-01 10 126089485 126089485 C T OAT Missense_Mutation p.M361I 0.21 tolerated(0.11) benign(0.164) TCGA-DD-A4NH-01 10 134731941 134731941 C A TTC40 Missense_Mutation p.D648Y 0.24 deleterious(0.05) benign(0.027) TCGA-DD-A4NH-01 10 46999762 46999762 C T GPRIN2 Silent p.A294A 0.06 TCGA-DD-A4NH-01 11 124971201 124971201 T A TMEM218 Splice_Site p.X37_splice 0.27 TCGA-DD-A4NH-01 11 64900425 64900425 A C SYVN1 Missense_Mutation p.F116V 0.17 deleterious(0) probably_damaging(0.96) TCGA-DD-A4NH-01 11 86048470 86048470 A G C11orf73 Silent p.P106P 0.22 TCGA-DD-A4NH-01 12 101490394 101490394 T A ANO4 Missense_Mutation p.S572T 0.13 deleterious(0.03) possibly_damaging(0.752) TCGA-DD-A4NH-01 12 29920979 29920979 G A TMTC1 Missense_Mutation p.P111L 0.14 deleterious(0) possibly_damaging(0.905) TCGA-DD-A4NH-01 12 58001298 58001298 C T DTX3 Missense_Mutation p.R218W 0.16 deleterious(0.02) possibly_damaging(0.872) TCGA-DD-A4NH-01 13 20246036 20246037 - A MPHOSPH8 3'UTR 0.15 TCGA-DD-A4NH-01 14 21167843 21167844 - ATC RNASE4 In_Frame_Ins p.K105delinsNQ 0.15 TCGA-DD-A4NH-01 15 45391660 45391660 C T DUOX2 Missense_Mutation p.A1146T 0.18 tolerated(0.12) benign(0.118) TCGA-DD-A4NH-01 16 2134406 2134406 C T TSC2 Nonsense_Mutation p.Q1395* 0.23 TCGA-DD-A4NH-01 16 29889651 29889651 C T SEZ6L2 Missense_Mutation p.V557M 0.26 deleterious(0.02) possibly_damaging(0.482) TCGA-DD-A4NH-01 16 32894016 32894016 G C RP11-989E6.3 5'Flank 0.25 TCGA-DD-A4NH-01 16 53524210 53524210 T C RBL2 Nonstop_Mutation p.*1140Rext*2 0.22 TCGA-DD-A4NH-01 17 40384099 40384100 - G STAT5B Frame_Shift_Ins p.H16Pfs*14 0.17 TCGA-DD-A4NH-01 17 76395500 76395500 T - PGS1 Frame_Shift_Del p.H196Tfs*37 0.26 TCGA-DD-A4NH-01 18 46448256 46448256 C T SMAD7 Missense_Mutation p.G256E 0.18 tolerated(0.08) benign(0.25) TCGA-DD-A4NH-01 19 15917988 15917988 C T OR10H1 Missense_Mutation p.S287N 0.18 tolerated(0.99) probably_damaging(0.999) TCGA-DD-A4NH-01 19 288111 288111 C T PPAP2C Missense_Mutation p.C59Y 0.14 deleterious(0) probably_damaging(0.997) TCGA-DD-A4NH-01 19 37045633 37045633 A G ZNF529 Silent p.S58S 0.23 TCGA-DD-A4NH-01 19 40540905 40540905 C T ZNF780B Missense_Mutation p.A621T 0.18 tolerated(0.34) probably_damaging(0.945) TCGA-DD-A4NH-01 19 55253690 55253690 C G KIR2DL3 Nonsense_Mutation p.S112* 0.31 TCGA-DD-A4NH-01 19 55450802 55450802 C T NLRP7 Missense_Mutation p.G462D 0.14 tolerated(0.28) benign(0.027) TCGA-DD-A4NH-01 1 118635840 118635840 A T SPAG17 Missense_Mutation p.L371H 0.07 deleterious(0) probably_damaging(1) TCGA-DD-A4NH-01 1 145273364 145273364 C G NOTCH2NL Missense_Mutation p.S73C 0.04 deleterious(0) possibly_damaging(0.868) TCGA-DD-A4NH-01 1 200959773 200959773 C A KIF21B Silent p.R922R 0.09 TCGA-DD-A4NH-01 1 205739399 205739399 C A RAB7L1 3'UTR 0.10 TCGA-DD-A4NH-01 1 22965369 22965369 C A C1QA Missense_Mutation p.D69E 0.17 tolerated(0.3) benign(0.013) TCGA-DD-A4NH-01 1 243800994 243800994 C - AKT3 Frame_Shift_Del p.V162Lfs*15 0.27 TCGA-DD-A4NH-01 1 51702468 51702468 T A RNF11 Missense_Mutation p.S14T 0.20 tolerated(0.17) possibly_damaging(0.844) TCGA-DD-A4NH-01 20 42143124 42143124 G A L3MBTL1 Intron 0.20 TCGA-DD-A4NH-01 20 49508933 49508934 TT - ADNP Frame_Shift_Del p.K773Vfs*14 0.20 TCGA-DD-A4NH-01 20 60791450 60791450 G A HRH3 Missense_Mutation p.P317L 0.35 deleterious(0.03) benign(0.277) TCGA-DD-A4NH-01 20 60887087 60887087 G A LAMA5 Missense_Mutation p.S3175F 0.26 benign(0.048) TCGA-DD-A4NH-01 20 62850235 62850235 T C MYT1 Intron 0.18 TCGA-DD-A4NH-01 2 179576711 179576711 G C TTN Missense_Mutation p.S9282R 0.14 TCGA-DD-A4NH-01 2 196740508 196740508 G T DNAH7 Silent p.P2059P 0.21 TCGA-DD-A4NH-01 2 242004719 242004719 C T SNED1 Silent p.L906L 0.14 TCGA-DD-A4NH-01 3 151166486 151166486 C A IGSF10 Missense_Mutation p.W428L 0.17 deleterious(0) probably_damaging(0.998) TCGA-DD-A4NH-01 3 183960448 183960448 G A ALG3 Missense_Mutation p.L391F 0.15 deleterious(0.01) possibly_damaging(0.698) TCGA-DD-A4NH-01 3 48610139 48610139 T A COL7A1 Nonsense_Mutation p.K2289* 0.13 TCGA-DD-A4NH-01 3 67054129 67054129 A T KBTBD8 Missense_Mutation p.E246D 0.21 tolerated(0.56) benign(0.008) TCGA-DD-A4NH-01 3 98541530 98541530 G A DCBLD2 Missense_Mutation p.P227S 0.19 tolerated(0.31) benign(0.345) TCGA-DD-A4NH-01 4 47517533 47517533 T C ATP10D Missense_Mutation p.W111R 0.12 deleterious(0) probably_damaging(0.993) TCGA-DD-A4NH-01 4 79238646 79238646 C A FRAS1 Missense_Mutation p.D648E 0.18 benign(0.013) TCGA-DD-A4NH-01 5 140869878 140869878 C T PCDHGC5 Silent p.N357N 0.23 TCGA-DD-A4NH-01 5 1409893 1409893 G A SLC6A3 Silent p.L447L 0.18 TCGA-DD-A4NH-01 5 178391688 178391688 A G ZNF454 Missense_Mutation p.T95A 0.32 tolerated(0.58) benign(0.001) TCGA-DD-A4NH-01 5 88119628 88119628 C G MEF2C 5'UTR 0.16 TCGA-DD-A4NH-01 6 32904957 32904957 C T HLA-DMB Missense_Mutation p.R205Q 0.27 tolerated(0.94) benign(0) TCGA-DD-A4NH-01 6 57393119 57393119 T A PRIM2 Missense_Mutation p.Y257N 0.10 deleterious(0) probably_damaging(0.965) TCGA-DD-A4NH-01 8 104897822 104897822 G T RIMS2 Missense_Mutation p.R332L 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DD-A4NH-01 9 134738510 134738510 G A MED27 Silent p.T247T 0.18 TCGA-DD-A4NH-01 9 136216457 136216457 G A RPL7A Missense_Mutation p.R59H 0.25 tolerated(0.41) benign(0.002) TCGA-DD-A4NH-01 9 27206595 27206595 G C TEK Missense_Mutation p.V794L 0.11 tolerated(1) benign(0.033) TCGA-DD-A4NH-01 9 71628907 71628907 G A PRKACG Silent p.P34P 0.04 TCGA-DD-A4NH-01 9 79983032 79983032 A C VPS13A Missense_Mutation p.I2845L 0.16 tolerated(0.1) benign(0.007) TCGA-DD-A4NH-01 9 97055385 97055385 G A ZNF169 Intron 0.14 TCGA-DD-A4NH-01 X 100088436 100088436 C T CSTF2 Missense_Mutation p.A492V 0.18 deleterious(0.03) benign(0.039) TCGA-DD-A4NH-01 X 153633194 153633194 T C DNASE1L1 Missense_Mutation p.M96V 0.20 deleterious(0.03) benign(0.388) TCGA-DD-A4NH-01 X 154010040 154010040 C T MPP1 Silent p.G328G 0.18 TCGA-DD-A4NH-01 X 50658924 50658924 T A BMP15 Missense_Mutation p.S166T 0.14 tolerated(0.66) benign(0.018) TCGA-DD-A4NH-01 X 53457369 53457369 G A RIBC1 Missense_Mutation p.R230H 0.18 tolerated(0.33) benign(0.027) TCGA-DD-A4NI-01 10 119003680 119003680 T C SLC18A2 Missense_Mutation p.V107A 0.11 tolerated(0.34) benign(0.005) TCGA-DD-A4NI-01 10 128796464 128796464 G A DOCK1 Missense_Mutation p.A240T 0.28 deleterious(0.03) possibly_damaging(0.483) TCGA-DD-A4NI-01 10 129216713 129216713 G T DOCK1 Missense_Mutation p.D1513Y 0.35 tolerated(0.08) benign(0.073) TCGA-DD-A4NI-01 10 135126248 135126248 G T ZNF511 Intron 0.14 TCGA-DD-A4NI-01 10 135126249 135126249 G T ZNF511 Intron 0.16 TCGA-DD-A4NI-01 10 44874043 44874043 G T CXCL12 Intron 0.10 TCGA-DD-A4NI-01 10 4875659 4875659 G T AKR1E2 Splice_Site p.X108_splice 0.21 TCGA-DD-A4NI-01 10 50863255 50863255 C T CHAT Silent p.A583A 0.33 TCGA-DD-A4NI-01 10 85909939 85909939 T C GHITM Missense_Mutation p.F241L 0.11 deleterious(0.04) possibly_damaging(0.766) TCGA-DD-A4NI-01 10 95791740 95791740 G A PLCE1 Missense_Mutation p.D313N 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.632) TCGA-DD-A4NI-01 10 97917317 97917317 G A ZNF518A RNA 0.23 TCGA-DD-A4NI-01 11 114577377 114577377 A C NXPE2 Missense_Mutation p.I469L 0.08 deleterious(0.01) benign(0.153) TCGA-DD-A4NI-01 11 116703552 116703552 C G APOC3 Missense_Mutation p.F84L 0.36 tolerated(0.83) benign(0.193) TCGA-DD-A4NI-01 11 14541864 14541864 G A PSMA1 Intron 0.17 TCGA-DD-A4NI-01 11 17141377 17141377 C T PIK3C2A Nonsense_Mutation p.W934* 0.34 TCGA-DD-A4NI-01 11 2920824 2920824 C G SLC22A18AS Missense_Mutation p.R36S 0.26 deleterious_low_confidence(0) benign(0) TCGA-DD-A4NI-01 11 34101204 34101204 G A CAPRIN1 Missense_Mutation p.V240I 0.29 tolerated(0.38) benign(0.008) TCGA-DD-A4NI-01 11 36599321 36599321 T G RAG1 3'UTR 0.36 TCGA-DD-A4NI-01 11 44073229 44073229 T A ACCSL Silent p.S244S 0.04 TCGA-DD-A4NI-01 11 44952502 44952502 C T TSPAN18 3'UTR 0.39 TCGA-DD-A4NI-01 11 47381502 47381502 G T SPI1 Missense_Mutation p.P79T 0.27 tolerated(0.08) possibly_damaging(0.619) TCGA-DD-A4NI-01 11 56949336 56949336 G T LRRC55 5'UTR 0.37 TCGA-DD-A4NI-01 11 62376466 62376466 T C EML3 Silent p.R299R 0.25 TCGA-DD-A4NI-01 11 62768191 62768191 C A SLC22A8 Splice_Site p.X146_splice 0.04 TCGA-DD-A4NI-01 11 6566625 6566625 A G DNHD1 Missense_Mutation p.K1486E 0.26 benign(0.001) TCGA-DD-A4NI-01 11 6651029 6651029 C T DCHS1 Missense_Mutation p.V1637I 0.16 tolerated(0.07) benign(0.03) TCGA-DD-A4NI-01 11 74676881 74676881 C A SPCS2 Missense_Mutation p.S91Y 0.39 deleterious(0) probably_damaging(0.997) TCGA-DD-A4NI-01 12 109717355 109717355 G A FOXN4 3'UTR 0.40 TCGA-DD-A4NI-01 12 10978297 10978297 A C TAS2R10 Missense_Mutation p.I191S 0.28 deleterious(0) possibly_damaging(0.862) TCGA-DD-A4NI-01 12 12815347 12815347 T C GPR19 Silent p.P12P 0.12 TCGA-DD-A4NI-01 12 131622709 131622709 A G GPR133 Missense_Mutation p.K822E 0.16 deleterious(0) possibly_damaging(0.587) TCGA-DD-A4NI-01 12 28459739 28459739 A G CCDC91 Missense_Mutation p.K111R 0.36 tolerated(0.4) benign(0.124) TCGA-DD-A4NI-01 12 30863308 30863308 G A CAPRIN2 Missense_Mutation p.T921I 0.09 deleterious(0) probably_damaging(0.996) TCGA-DD-A4NI-01 12 51758078 51758078 C T GALNT6 Silent p.V292V 0.29 TCGA-DD-A4NI-01 12 53189359 53189359 G A KRT3 Silent p.G156G 0.38 TCGA-DD-A4NI-01 12 56515237 56515237 C T ZC3H10 Silent p.P297P 0.39 TCGA-DD-A4NI-01 12 56982944 56982944 C A RBMS2 3'UTR 0.21 TCGA-DD-A4NI-01 12 70988332 70988332 C T PTPRB Silent p.G477G 0.27 TCGA-DD-A4NI-01 12 7276678 7276678 G A RBP5 3'UTR 0.06 TCGA-DD-A4NI-01 12 9070234 9070234 T A PHC1 5'UTR 0.10 TCGA-DD-A4NI-01 13 115052106 115052106 T C UPF3A Splice_Site p.X211_splice 0.09 TCGA-DD-A4NI-01 13 25285794 25285794 G A ATP12A 3'UTR 0.28 TCGA-DD-A4NI-01 13 26586735 26586735 C A ATP8A2 Silent p.G1148G 0.58 TCGA-DD-A4NI-01 13 31549019 31549019 G A TEX26 Missense_Mutation p.C282Y 0.22 tolerated(0.23) benign(0.045) TCGA-DD-A4NI-01 13 41766715 41766715 T C KBTBD7 Missense_Mutation p.Q560R 0.27 tolerated(0.73) benign(0.002) TCGA-DD-A4NI-01 13 42763420 42763420 G T DGKH Missense_Mutation p.R629S 0.26 deleterious(0.01) probably_damaging(0.954) TCGA-DD-A4NI-01 13 45563368 45563368 G - NUFIP1 Frame_Shift_Del p.M69Wfs*134 0.28 TCGA-DD-A4NI-01 14 106452843 106452843 G T IGHV1-2 Missense_Mutation p.P60H 0.34 tolerated(0.07) benign(0.292) TCGA-DD-A4NI-01 14 24618693 24618693 G T RNF31 Missense_Mutation p.C237F 0.29 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NI-01 14 59930690 59930690 C A GPR135 Missense_Mutation p.G419C 0.33 deleterious(0.02) possibly_damaging(0.885) TCGA-DD-A4NI-01 14 64457170 64457170 A G SYNE2 Silent p.A785A 0.12 TCGA-DD-A4NI-01 15 25221503 25221503 G T SNRPN Silent p.L69L 0.05 TCGA-DD-A4NI-01 15 33855053 33855053 T A RYR3 Missense_Mutation p.L330I 0.34 benign(0.11) TCGA-DD-A4NI-01 15 42646624 42646624 A G GANC 3'Flank 0.38 TCGA-DD-A4NI-01 15 48533795 48533795 A G SLC12A1 Silent p.V433V 0.35 TCGA-DD-A4NI-01 15 49254841 49254841 G T SHC4 Missense_Mutation p.D124E 0.35 tolerated(0.85) benign(0.006) TCGA-DD-A4NI-01 15 75782644 75782644 T A PTPN9 Splice_Site p.X323_splice 0.23 TCGA-DD-A4NI-01 15 76994169 76994169 C G SCAPER Missense_Mutation p.G813A 0.27 deleterious(0.03) possibly_damaging(0.563) TCGA-DD-A4NI-01 15 79350802 79350802 C T RASGRF1 Silent p.E135E 0.30 TCGA-DD-A4NI-01 15 83357541 83357541 C G AP3B2 Missense_Mutation p.E103Q 0.18 tolerated(0.06) benign(0.262) TCGA-DD-A4NI-01 16 18584198 18584198 G T RP11-457I16.2 5'Flank 0.27 TCGA-DD-A4NI-01 16 20494379 20494379 G A ACSM2A Splice_Site p.X504_splice 0.23 TCGA-DD-A4NI-01 16 24834929 24834929 T G TNRC6A Missense_Mutation p.L1897R 0.21 tolerated(0.11) benign(0.309) TCGA-DD-A4NI-01 16 28167815 28167815 C T XPO6 Missense_Mutation p.S226N 0.11 tolerated(0.31) benign(0.006) TCGA-DD-A4NI-01 16 31487440 31487440 C A TGFB1I1 Missense_Mutation p.F274L 0.26 deleterious(0.03) benign(0.411) TCGA-DD-A4NI-01 16 56868090 56868090 C T NUP93 Missense_Mutation p.R530W 0.25 deleterious(0) probably_damaging(0.996) TCGA-DD-A4NI-01 16 67943502 67943502 G T PSKH1 Missense_Mutation p.G284C 0.28 deleterious(0) probably_damaging(1) TCGA-DD-A4NI-01 16 70170122 70170122 G A PDPR Silent p.R341R 0.05 TCGA-DD-A4NI-01 16 70863697 70863697 T C HYDIN Missense_Mutation p.T4646A 0.29 possibly_damaging(0.801) TCGA-DD-A4NI-01 16 84270993 84270993 C A KCNG4 Silent p.T33T 0.32 TCGA-DD-A4NI-01 17 27023949 27023949 G A SUPT6H Missense_Mutation p.G1353D 0.34 deleterious(0) probably_damaging(1) TCGA-DD-A4NI-01 17 4086813 4086825 GAGCCCAGCAGCT - ANKFY1 Frame_Shift_Del p.Q649Lfs*38 0.20 TCGA-DD-A4NI-01 17 4446343 4446343 G A MYBBP1A Silent p.T919T 0.09 TCGA-DD-A4NI-01 17 62248484 62248484 A T TEX2 Missense_Mutation p.F890I 0.14 tolerated(0.09) benign(0.352) TCGA-DD-A4NI-01 17 71443757 71443757 C T SDK2 Missense_Mutation p.E204K 0.13 tolerated(0.56) benign(0.021) TCGA-DD-A4NI-01 17 72342641 72342641 G T KIF19 Missense_Mutation p.S301I 0.56 deleterious(0) probably_damaging(1) TCGA-DD-A4NI-01 17 7370078 7370078 C T ZBTB4 Missense_Mutation p.A15T 0.32 unknown(0) TCGA-DD-A4NI-01 17 79479128 79479128 C A ACTG1 Missense_Mutation p.G55V 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DD-A4NI-01 17 8047144 8047144 T C PER1 Missense_Mutation p.K838E 0.14 deleterious(0.03) possibly_damaging(0.48) TCGA-DD-A4NI-01 18 12699183 12699183 C T CEP76 Silent p.R105R 0.21 TCGA-DD-A4NI-01 18 28971168 28971168 A C DSG4 Missense_Mutation p.K271T 0.32 tolerated(0.12) possibly_damaging(0.557) TCGA-DD-A4NI-01 18 29115251 29115251 T C DSG2 Silent p.D433D 0.22 TCGA-DD-A4NI-01 18 33573185 33573185 A G RPRD1A Missense_Mutation p.S290P 0.30 deleterious(0) possibly_damaging(0.864) TCGA-DD-A4NI-01 18 48346357 48346367 TTCTGCAGAAA - MRO 5'UTR 0.16 TCGA-DD-A4NI-01 19 12936845 12936845 G A RTBDN Intron 0.40 TCGA-DD-A4NI-01 19 15538010 15538010 G A WIZ Silent p.G288G 0.32 TCGA-DD-A4NI-01 19 16000329 16000329 C T CYP4F2 Silent p.R274R 0.42 TCGA-DD-A4NI-01 19 22940609 22940609 C A ZNF99 Missense_Mutation p.G701V 0.27 deleterious(0) probably_damaging(0.995) TCGA-DD-A4NI-01 19 22940610 22940610 C A ZNF99 Nonsense_Mutation p.G701* 0.26 TCGA-DD-A4NI-01 19 39421333 39421333 C T SARS2 Missense_Mutation p.R15H 0.48 tolerated_low_confidence(0.26) benign(0.003) TCGA-DD-A4NI-01 19 41009866 41009866 G A SPTBN4 Missense_Mutation p.E498K 0.06 deleterious(0) possibly_damaging(0.572) TCGA-DD-A4NI-01 19 44980916 44980916 T A ZNF180 Silent p.V594V 0.41 TCGA-DD-A4NI-01 19 4818030 4818030 T G TICAM1 Missense_Mutation p.E120D 0.18 deleterious(0.01) benign(0.093) TCGA-DD-A4NI-01 19 49573780 49573780 G A KCNA7 Missense_Mutation p.T304M 0.07 deleterious(0) probably_damaging(1) TCGA-DD-A4NI-01 19 54967843 54967843 C A LENG8 Silent p.R492R 0.31 TCGA-DD-A4NI-01 19 55686689 55686689 C A SYT5 Missense_Mutation p.G187W 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-DD-A4NI-01 19 6495192 6495192 C G TUBB4A Missense_Mutation p.E440Q 0.22 tolerated_low_confidence(0.09) unknown(0) TCGA-DD-A4NI-01 19 6495193 6495193 C G TUBB4A Silent p.A439A 0.24 TCGA-DD-A4NI-01 19 6693493 6693493 T C C3 Missense_Mutation p.T1054A 0.47 tolerated(0.35) benign(0.009) TCGA-DD-A4NI-01 19 7504866 7504866 G T ARHGEF18 Missense_Mutation p.A14S 0.35 deleterious_low_confidence(0.02) benign(0.423) TCGA-DD-A4NI-01 1 11589684 11589684 T G PTCHD2 Missense_Mutation p.L957R 0.29 tolerated_low_confidence(0.41) benign(0.05) TCGA-DD-A4NI-01 1 146757007 146757008 - T CHD1L Frame_Shift_Ins p.G623Rfs*47 0.10 TCGA-DD-A4NI-01 1 155932460 155932460 C T ARHGEF2 Missense_Mutation p.C342Y 0.08 deleterious(0) benign(0.424) TCGA-DD-A4NI-01 1 156937793 156937793 A C ARHGEF11 Missense_Mutation p.S317A 0.22 tolerated(0.18) benign(0.005) TCGA-DD-A4NI-01 1 157494326 157494326 A T FCRL5 Missense_Mutation p.L661H 0.06 deleterious(0) probably_damaging(0.997) TCGA-DD-A4NI-01 1 159805254 159805254 C A SLAMF8 3'UTR 0.33 TCGA-DD-A4NI-01 1 169599347 169599347 C A SELP 5'UTR 0.14 TCGA-DD-A4NI-01 1 173880936 173880936 C T SERPINC1 Splice_Site p.X208_splice 0.41 TCGA-DD-A4NI-01 1 182794948 182794948 C G NPL Silent p.V257V 0.11 TCGA-DD-A4NI-01 1 204970404 204970404 G C NFASC Missense_Mutation p.E1042D 0.09 deleterious(0) unknown(0) TCGA-DD-A4NI-01 1 207241653 207241653 C T PFKFB2 Missense_Mutation p.A329V 0.06 probably_damaging(1) TCGA-DD-A4NI-01 1 21314838 21314838 T C EIF4G3 Intron 0.30 TCGA-DD-A4NI-01 1 216040372 216040372 A G USH2A Missense_Mutation p.I2941T 0.10 benign(0.175) TCGA-DD-A4NI-01 1 216371756 216371756 C T USH2A Missense_Mutation p.G1328S 0.08 probably_damaging(0.911) TCGA-DD-A4NI-01 1 220174520 220174520 C A EPRS Missense_Mutation p.G714V 0.26 tolerated(0.05) benign(0.41) TCGA-DD-A4NI-01 1 229596501 229596502 - A NUP133 Frame_Shift_Ins p.L901Sfs*33 0.20 TCGA-DD-A4NI-01 1 236850058 236850058 G A ACTN2 Missense_Mutation p.D29N 0.08 deleterious(0.01) benign(0.262) TCGA-DD-A4NI-01 1 247599337 247599337 A G NLRP3 Missense_Mutation p.H855R 0.18 tolerated(0.34) benign(0.001) TCGA-DD-A4NI-01 1 247921053 247921053 C A OR1C1 Missense_Mutation p.G219V 0.20 tolerated(0.63) benign(0.007) TCGA-DD-A4NI-01 1 25944335 25944335 G A MAN1C1 Missense_Mutation p.G16E 0.42 deleterious(0.01) probably_damaging(0.935) TCGA-DD-A4NI-01 1 45278683 45278683 G A BTBD19 Missense_Mutation p.G144S 0.24 tolerated(0.16) possibly_damaging(0.842) TCGA-DD-A4NI-01 1 59844499 59844499 G A FGGY Missense_Mutation p.V182I 0.06 tolerated(0.44) benign(0.02) TCGA-DD-A4NI-01 20 36322474 36322474 G T CTNNBL1 5'UTR 0.33 TCGA-DD-A4NI-01 20 50273555 50273555 G T ATP9A Missense_Mutation p.N476K 0.11 tolerated(0.13) benign(0.027) TCGA-DD-A4NI-01 20 58533734 58533734 G A CDH26 5'UTR 0.41 TCGA-DD-A4NI-01 20 61143534 61143534 C T C20orf166 5'Flank 0.53 TCGA-DD-A4NI-01 21 31964987 31964987 G C KRTAP6-3 Missense_Mutation p.G68R 0.07 unknown(0) TCGA-DD-A4NI-01 21 31964988 31964988 G C KRTAP6-3 Missense_Mutation p.G68A 0.08 unknown(0) TCGA-DD-A4NI-01 21 34925635 34925635 C T SON Silent p.T1366T 0.25 TCGA-DD-A4NI-01 21 45656879 45656879 G A ICOSLG Missense_Mutation p.R93W 0.32 deleterious(0) probably_damaging(0.971) TCGA-DD-A4NI-01 22 20385730 20385730 A C PI4KAP1 RNA 0.03 TCGA-DD-A4NI-01 22 21829504 21829504 A C TMEM191C 3'Flank 0.31 TCGA-DD-A4NI-01 22 26706735 26706735 C A SEZ6L Missense_Mutation p.N538K 0.31 tolerated(0.27) benign(0.155) TCGA-DD-A4NI-01 22 29885446 29885446 C A NEFH Missense_Mutation p.S606Y 0.29 deleterious(0) possibly_damaging(0.781) TCGA-DD-A4NI-01 22 37627372 37627372 T C RAC2 Missense_Mutation p.K116R 0.04 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-DD-A4NI-01 22 47073042 47073042 A T GRAMD4 Splice_Site p.X545_splice 0.06 TCGA-DD-A4NI-01 2 102836404 102836404 A G IL1RL2 Silent p.K306K 0.41 TCGA-DD-A4NI-01 2 137990568 137990568 C T THSD7B Missense_Mutation p.P672L 0.25 tolerated(0.17) possibly_damaging(0.607) TCGA-DD-A4NI-01 2 148657133 148657133 C T ACVR2A Nonsense_Mutation p.Q124* 0.30 TCGA-DD-A4NI-01 2 178098968 178098968 T G NFE2L2 Missense_Mutation p.Q26P 0.05 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NI-01 2 189927932 189927932 C T COL5A2 Missense_Mutation p.G612E 0.38 probably_damaging(1) TCGA-DD-A4NI-01 2 191159323 191159323 T C HIBCH Missense_Mutation p.I85V 0.10 tolerated(0.08) benign(0.025) TCGA-DD-A4NI-01 2 216946374 216946397 CGATGCCCGTGGCCCCGCCGGTGA - PECR In_Frame_Del p.V23_I30del 0.37 TCGA-DD-A4NI-01 2 220432567 220432567 C A OBSL1 Silent p.P469P 0.39 TCGA-DD-A4NI-01 2 230632438 230632438 T A TRIP12 Silent p.T1937T 0.24 TCGA-DD-A4NI-01 2 242592932 242592932 A G ATG4B Missense_Mutation p.T64A 0.20 deleterious(0.01) possibly_damaging(0.688) TCGA-DD-A4NI-01 2 33246001 33246001 T C LTBP1 Silent p.N197N 0.05 TCGA-DD-A4NI-01 2 39249927 39249927 T C SOS1 Missense_Mutation p.S548G 0.32 deleterious(0.02) benign(0.074) TCGA-DD-A4NI-01 2 50464017 50464017 C A NRXN1 Silent p.L1192L 0.26 TCGA-DD-A4NI-01 2 62449528 62449528 A T B3GNT2 Missense_Mutation p.Y58F 0.10 tolerated(0.53) benign(0.005) TCGA-DD-A4NI-01 2 74754135 74754135 T C AUP1 Missense_Mutation p.K377E 0.04 deleterious(0.01) probably_damaging(0.962) TCGA-DD-A4NI-01 2 95954033 95954033 G A PROM2 Missense_Mutation p.M773I 0.05 tolerated(0.36) benign(0.412) TCGA-DD-A4NI-01 3 113753775 113753775 T G KIAA1407 Missense_Mutation p.K272T 0.35 deleterious(0.01) possibly_damaging(0.875) TCGA-DD-A4NI-01 3 122418685 122418685 A T PARP14 Silent p.T428T 0.22 TCGA-DD-A4NI-01 3 124592297 124592297 T C ITGB5 Missense_Mutation p.K51R 0.05 tolerated(0.08) benign(0.012) TCGA-DD-A4NI-01 3 126062722 126062722 C T KLF15 Missense_Mutation p.E367K 0.45 deleterious(0) probably_damaging(0.998) TCGA-DD-A4NI-01 3 193029676 193029676 A G ATP13A5 Missense_Mutation p.C792R 0.16 tolerated(0.55) benign(0.102) TCGA-DD-A4NI-01 3 196387008 196387008 C T NRROS Missense_Mutation p.A165V 0.54 deleterious(0.02) benign(0.212) TCGA-DD-A4NI-01 3 197592322 197592322 G T LRCH3 Missense_Mutation p.S582I 0.04 deleterious(0.01) benign(0.056) TCGA-DD-A4NI-01 3 38138132 38138132 A T DLEC1 Missense_Mutation p.K748N 0.36 deleterious(0) probably_damaging(0.988) TCGA-DD-A4NI-01 3 38622799 38622799 C T SCN5A Missense_Mutation p.D951N 0.09 deleterious(0.02) possibly_damaging(0.566) TCGA-DD-A4NI-01 3 41266110 41266110 A C CTNNB1 Missense_Mutation p.H36P 0.30 deleterious(0.04) benign(0.397) TCGA-DD-A4NI-01 3 433400 433400 A C CHL1 Missense_Mutation p.K945T 0.31 tolerated(0.06) possibly_damaging(0.885) TCGA-DD-A4NI-01 3 44637129 44637129 T C ZNF660 3'UTR 0.33 TCGA-DD-A4NI-01 3 47888778 47888778 G A DHX30 Missense_Mutation p.A649T 0.07 tolerated(0.48) benign(0.003) TCGA-DD-A4NI-01 3 52283840 52283840 C A PPM1M 3'UTR 0.13 TCGA-DD-A4NI-01 3 52824922 52824922 A G ITIH1 Missense_Mutation p.T827A 0.30 tolerated(0.12) probably_damaging(0.999) TCGA-DD-A4NI-01 3 63594864 63594864 G A SYNPR Missense_Mutation p.G158R 0.30 deleterious(0) possibly_damaging(0.809) TCGA-DD-A4NI-01 4 122301704 122301704 C G QRFPR Silent p.P33P 0.28 TCGA-DD-A4NI-01 4 122747089 122747089 T C BBS7 Missense_Mutation p.K692E 0.27 deleterious(0.01) benign(0.234) TCGA-DD-A4NI-01 4 151168791 151168791 C A DCLK2 Silent p.I622I 0.38 TCGA-DD-A4NI-01 4 165878425 165878425 T C FAM218A Missense_Mutation p.F84S 0.31 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-DD-A4NI-01 4 56422846 56422846 T A PDCL2 Missense_Mutation p.I202L 0.28 tolerated(0.09) benign(0.215) TCGA-DD-A4NI-01 4 74283832 74283834 GTG - ALB In_Frame_Del p.V486del 0.16 TCGA-DD-A4NI-01 5 102895039 102895039 C T NUDT12 Missense_Mutation p.E113K 0.23 tolerated(0.19) benign(0.001) TCGA-DD-A4NI-01 5 127674670 127674670 A G FBN2 Missense_Mutation p.F1143L 0.06 tolerated(0.21) benign(0.267) TCGA-DD-A4NI-01 5 140554893 140554893 A T PCDHB7 3'UTR 0.16 TCGA-DD-A4NI-01 5 140856170 140856170 G T PCDHGC3 Missense_Mutation p.D163Y 0.08 deleterious(0) probably_damaging(1) TCGA-DD-A4NI-01 5 159797621 159797621 C A C1QTNF2 Silent p.P8P 0.33 TCGA-DD-A4NI-01 5 176318451 176318451 G A HK3 Missense_Mutation p.A66V 0.08 deleterious(0.02) benign(0.008) TCGA-DD-A4NI-01 5 176885388 176885388 C A DBN1 Missense_Mutation p.G485W 0.39 deleterious(0) probably_damaging(0.992) TCGA-DD-A4NI-01 5 180166721 180166721 A C OR2Y1 Missense_Mutation p.V113G 0.07 deleterious(0) possibly_damaging(0.883) TCGA-DD-A4NI-01 6 132859671 132859671 G C TAAR9 Silent p.V81V 0.37 TCGA-DD-A4NI-01 6 137815097 137815097 T C OLIG3 Missense_Mutation p.K71E 0.05 deleterious(0) probably_damaging(0.971) TCGA-DD-A4NI-01 6 27834746 27834746 T C HIST1H1B Missense_Mutation p.K188E 0.23 tolerated(0.09) unknown(0) TCGA-DD-A4NI-01 6 32036335 32036335 G C TNXB Missense_Mutation p.L2018V 0.16 benign(0.014) TCGA-DD-A4NI-01 6 41048594 41048594 G A NFYA Silent p.Q40Q 0.31 TCGA-DD-A4NI-01 6 44273478 44273478 G A AARS2 Missense_Mutation p.P449L 0.26 deleterious(0) probably_damaging(0.993) TCGA-DD-A4NI-01 6 83866961 83866961 T C DOPEY1 Missense_Mutation p.L2222P 0.07 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NI-01 6 96663020 96663020 G T FUT9 3'UTR 0.40 TCGA-DD-A4NI-01 7 100364744 100364744 G T ZAN Missense_Mutation p.R1575M 0.12 unknown(0) TCGA-DD-A4NI-01 7 102988211 102988211 A C PSMC2 Missense_Mutation p.D18A 0.42 tolerated_low_confidence(0.16) benign(0.001) TCGA-DD-A4NI-01 7 111517084 111517084 A G DOCK4 Splice_Site p.X582_splice 0.06 TCGA-DD-A4NI-01 7 122526154 122526154 C G CADPS2 Missense_Mutation p.E80Q 0.20 tolerated(0.05) benign(0.035) TCGA-DD-A4NI-01 7 12409576 12409576 C A VWDE Missense_Mutation p.D786Y 0.41 deleterious(0) possibly_damaging(0.804) TCGA-DD-A4NI-01 7 128531548 128531548 T C KCP RNA 0.31 TCGA-DD-A4NI-01 7 142458441 142458441 G A PRSS1 Missense_Mutation p.G26R 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-DD-A4NI-01 7 18688299 18688299 T A HDAC9 Missense_Mutation p.M487K 0.28 deleterious(0.02) possibly_damaging(0.836) TCGA-DD-A4NI-01 7 23353255 23353255 A G IGF2BP3 Silent p.Y471Y 0.48 TCGA-DD-A4NI-01 7 2472325 2472325 C A CHST12 Missense_Mutation p.F17L 0.53 tolerated(0.33) benign(0.024) TCGA-DD-A4NI-01 7 31829777 31829777 G C PDE1C Intron 0.42 TCGA-DD-A4NI-01 7 35242186 35242186 C A TBX20 Silent p.S400S 0.22 TCGA-DD-A4NI-01 7 4091432 4091432 A T SDK1 Missense_Mutation p.T961S 0.08 tolerated(0.59) benign(0.001) TCGA-DD-A4NI-01 7 7646782 7646782 T A MIOS 3'UTR 0.47 TCGA-DD-A4NI-01 7 83643576 83643576 A G SEMA3A Silent p.D253D 0.47 TCGA-DD-A4NI-01 7 905675 905675 T G SUN1 Missense_Mutation p.F651V 0.46 deleterious(0.02) probably_damaging(0.982) TCGA-DD-A4NI-01 8 11995368 11995368 A G USP17L2 Missense_Mutation p.L301P 0.10 deleterious(0) possibly_damaging(0.908) TCGA-DD-A4NI-01 8 142435203 142435203 A T PTP4A3 Missense_Mutation p.D54V 0.21 deleterious(0) probably_damaging(0.985) TCGA-DD-A4NI-01 8 17815276 17815276 A G PCM1 Missense_Mutation p.M678V 0.10 tolerated(0.07) benign(0.039) TCGA-DD-A4NI-01 8 23538852 23538852 G A NKX3-1 Missense_Mutation p.S196F 0.47 deleterious(0.01) possibly_damaging(0.736) TCGA-DD-A4NI-01 8 56436936 56436936 G A XKR4 3'UTR 0.43 TCGA-DD-A4NI-01 9 107331510 107331510 C A OR13C8 Missense_Mutation p.P21Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NI-01 9 131762026 131762026 A T NUP188 Missense_Mutation p.K1262M 0.07 deleterious(0.03) possibly_damaging(0.847) TCGA-DD-A4NI-01 9 137300011 137300011 A G RXRA Missense_Mutation p.N99S 0.35 tolerated(0.36) benign(0.403) TCGA-DD-A4NI-01 9 140174921 140174921 T C TOR4A 3'UTR 0.29 TCGA-DD-A4NI-01 9 19528053 19528053 C T SLC24A2 Silent p.A521A 0.38 TCGA-DD-A4NI-01 9 40773313 40773313 C A ZNF658 Silent p.G654G 0.15 TCGA-DD-A4NI-01 X 101095774 101095774 G C NXF5 Missense_Mutation p.L192V 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-DD-A4NI-01 X 152858107 152858107 C A FAM58A Missense_Mutation p.A170S 0.65 tolerated(0.19) possibly_damaging(0.552) TCGA-DD-A4NI-01 X 154197619 154197619 A T F8 Silent p.S332S 0.09 TCGA-DD-A4NI-01 X 27765563 27765563 G A DCAF8L2 Missense_Mutation p.R184Q 0.03 tolerated(0.19) benign(0.057) TCGA-DD-A4NI-01 X 85302520 85302520 G A CHM Missense_Mutation p.P6L 0.63 deleterious(0.01) probably_damaging(1) TCGA-DD-A4NJ-01 10 101636820 101636820 C T DNMBP 3'UTR 0.36 TCGA-DD-A4NJ-01 10 102509535 102509535 G A PAX2 Missense_Mutation p.V26M 0.35 tolerated(0.14) probably_damaging(0.993) TCGA-DD-A4NJ-01 10 127798378 127798378 T C ADAM12 Missense_Mutation p.Y215C 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-DD-A4NJ-01 10 131665456 131665456 A G EBF3 Missense_Mutation p.Y321H 0.31 deleterious(0.02) possibly_damaging(0.878) TCGA-DD-A4NJ-01 10 38647315 38647315 T A HSD17B7P2 RNA 0.33 TCGA-DD-A4NJ-01 10 78761222 78761222 T A KCNMA1 Intron 0.13 TCGA-DD-A4NJ-01 11 101952001 101952001 G A C11orf70 Missense_Mutation p.V222I 0.22 tolerated(0.07) possibly_damaging(0.753) TCGA-DD-A4NJ-01 11 129762747 129762747 T C NFRKB Missense_Mutation p.T13A 0.14 deleterious_low_confidence(0.02) unknown(0) TCGA-DD-A4NJ-01 11 18579874 18579874 T G UEVLD Missense_Mutation p.I206L 0.13 tolerated(1) benign(0.038) TCGA-DD-A4NJ-01 11 34118806 34118806 A C CAPRIN1 Missense_Mutation p.Q655P 0.04 tolerated(0.05) benign(0.333) TCGA-DD-A4NJ-01 11 60561505 60561505 G A MS4A10 Missense_Mutation p.V141I 0.45 tolerated(0.14) possibly_damaging(0.665) TCGA-DD-A4NJ-01 11 6453126 6453127 AT - HPX Frame_Shift_Del p.Y319Sfs*82 0.20 TCGA-DD-A4NJ-01 11 65318651 65318651 G A LTBP3 Missense_Mutation p.P556S 0.09 deleterious(0.01) benign(0.219) TCGA-DD-A4NJ-01 11 70348970 70348970 T A SHANK2 Missense_Mutation p.N711Y 0.29 deleterious(0) probably_damaging(1) TCGA-DD-A4NJ-01 11 99827704 99827704 C T CNTN5 Silent p.V280V 0.38 TCGA-DD-A4NJ-01 12 271125 271125 T A IQSEC3 Missense_Mutation p.L826Q 0.50 deleterious(0) probably_damaging(0.995) TCGA-DD-A4NJ-01 12 53074087 53074087 C A KRT1 Missense_Mutation p.G16C 0.12 deleterious(0) unknown(0) TCGA-DD-A4NJ-01 12 55759405 55759405 G T OR6C75 Missense_Mutation p.V171L 0.36 deleterious_low_confidence(0.02) benign(0.022) TCGA-DD-A4NJ-01 12 56398608 56398608 G A SUOX Missense_Mutation p.E479K 0.10 tolerated(0.39) benign(0.005) TCGA-DD-A4NJ-01 12 89891089 89891089 A G POC1B Missense_Mutation p.L44P 0.13 deleterious(0) probably_damaging(0.99) TCGA-DD-A4NJ-01 13 48941636 48941636 A T RB1 Missense_Mutation p.N316Y 0.45 deleterious(0.04) benign(0.189) TCGA-DD-A4NJ-01 13 48951170 48951170 G A RB1 Silent p.Q444Q 0.47 TCGA-DD-A4NJ-01 13 73312100 73312100 T C BORA Missense_Mutation p.F103L 0.23 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NJ-01 14 102551156 102551178 CTTAATCTTCTTCTTCTTCTTCT - HSP90AA1 Frame_Shift_Del p.K396Rfs*25 0.18 TCGA-DD-A4NJ-01 14 104642627 104642627 A C KIF26A Missense_Mutation p.S1168R 0.17 deleterious(0.04) benign(0.109) TCGA-DD-A4NJ-01 14 104642628 104642628 G T KIF26A Missense_Mutation p.S1168I 0.18 deleterious(0.02) benign(0.168) TCGA-DD-A4NJ-01 14 20897132 20897132 C A KLHL33 Missense_Mutation p.R493L 0.37 deleterious(0.04) probably_damaging(0.979) TCGA-DD-A4NJ-01 14 78202323 78202323 G C SNW1 Missense_Mutation p.P222R 0.30 deleterious(0) probably_damaging(0.997) TCGA-DD-A4NJ-01 14 79434590 79434590 T A NRXN3 Missense_Mutation p.F642I 0.24 deleterious(0) probably_damaging(0.941) TCGA-DD-A4NJ-01 14 90651290 90651290 G T KCNK13 Silent p.G390G 0.26 TCGA-DD-A4NJ-01 14 91780183 91780183 C T CCDC88C Silent p.E659E 0.33 TCGA-DD-A4NJ-01 15 100594228 100594228 G A ADAMTS17 Silent p.N723N 0.47 TCGA-DD-A4NJ-01 15 20876516 20876516 C A NBEAP1 RNA 0.07 TCGA-DD-A4NJ-01 16 2946481 2946481 G A FLYWCH2 Missense_Mutation p.G11S 0.21 tolerated(0.09) benign(0.048) TCGA-DD-A4NJ-01 16 68721498 68721498 C A CDH3 Missense_Mutation p.Q552K 0.52 tolerated(0.4) benign(0.002) TCGA-DD-A4NJ-01 17 21731636 21731636 A T UBBP4 3'UTR 0.50 TCGA-DD-A4NJ-01 17 29553694 29553694 T G NF1 Missense_Mutation p.M748R 0.44 tolerated(0.14) benign(0.001) TCGA-DD-A4NJ-01 17 37319108 37319108 C G ARL5C Missense_Mutation p.L37F 0.07 tolerated(0.44) probably_damaging(0.999) TCGA-DD-A4NJ-01 17 37421707 37421707 C A FBXL20 Splice_Site p.X312_splice 0.43 TCGA-DD-A4NJ-01 17 42635258 42635258 G T FZD2 Missense_Mutation p.D68Y 0.06 deleterious(0) probably_damaging(0.98) TCGA-DD-A4NJ-01 17 54558126 54558126 C T ANKFN1 Missense_Mutation p.L683F 0.17 deleterious(0.03) probably_damaging(0.997) TCGA-DD-A4NJ-01 17 6979004 6979004 C - CLEC10A Intron 0.31 TCGA-DD-A4NJ-01 17 75877980 75877980 G C FLJ45079 3'UTR 0.06 TCGA-DD-A4NJ-01 18 10468488 10468488 C T APCDD1 Silent p.L27L 0.39 TCGA-DD-A4NJ-01 19 14877174 14877174 G T EMR2 Silent p.S169S 0.25 TCGA-DD-A4NJ-01 19 2280897 2280897 C T C19orf35 Missense_Mutation p.E12K 0.10 tolerated(0.82) benign(0.113) TCGA-DD-A4NJ-01 19 2794767 2794767 A C THOP1 Silent p.R79R 0.16 TCGA-DD-A4NJ-01 19 39018424 39018424 G T RYR1 Missense_Mutation p.Q3608H 0.25 benign(0) TCGA-DD-A4NJ-01 19 48495386 48495386 A G BSPH1 5'UTR 0.34 TCGA-DD-A4NJ-01 19 49548566 49548566 G A CGB5 3'UTR 0.12 TCGA-DD-A4NJ-01 19 55687105 55687105 G C SYT5 Missense_Mutation p.P171R 0.19 deleterious(0) probably_damaging(1) TCGA-DD-A4NJ-01 19 56244429 56244429 G C NLRP9 Missense_Mutation p.I256M 0.26 deleterious(0) probably_damaging(0.951) TCGA-DD-A4NJ-01 1 117554255 117554255 G C CD101 Missense_Mutation p.A170P 0.13 deleterious(0.01) probably_damaging(0.932) TCGA-DD-A4NJ-01 1 158906744 158906744 A G PYHIN1 Missense_Mutation p.E15G 0.13 deleterious(0) probably_damaging(0.975) TCGA-DD-A4NJ-01 1 16261862 16261862 A G SPEN Missense_Mutation p.S3043G 0.20 benign(0.016) TCGA-DD-A4NJ-01 1 16374904 16374904 G C CLCNKB Missense_Mutation p.G189R 0.11 tolerated(0.07) benign(0.325) TCGA-DD-A4NJ-01 1 202910637 202910637 C T ADIPOR1 3'UTR 0.26 TCGA-DD-A4NJ-01 1 224345363 224345363 A T FBXO28 Missense_Mutation p.N341I 0.04 deleterious(0.05) benign(0.202) TCGA-DD-A4NJ-01 1 9777146 9777146 C T PIK3CD Missense_Mutation p.P304S 0.36 tolerated(0.49) possibly_damaging(0.792) TCGA-DD-A4NJ-01 20 2591138 2591138 A T TMC2 Missense_Mutation p.Y496F 0.13 deleterious(0) possibly_damaging(0.901) TCGA-DD-A4NJ-01 20 39985824 39985824 A G LPIN3 Missense_Mutation p.T650A 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-DD-A4NJ-01 20 58416548 58416548 G A PHACTR3 Silent p.R515R 0.15 TCGA-DD-A4NJ-01 20 62275626 62275626 G A STMN3 Missense_Mutation p.S19L 0.32 deleterious(0.01) possibly_damaging(0.793) TCGA-DD-A4NJ-01 20 861812 861812 A C ANGPT4 Splice_Site p.X317_splice 0.36 TCGA-DD-A4NJ-01 21 38538717 38538717 G A TTC3 Missense_Mutation p.A1401T 0.28 tolerated(0.18) benign(0.01) TCGA-DD-A4NJ-01 21 43808542 43808542 T C TMPRSS3 Missense_Mutation p.N139S 0.33 tolerated(0.58) benign(0.009) TCGA-DD-A4NJ-01 22 20458280 20458280 A C RIMBP3 Missense_Mutation p.S1008A 0.18 deleterious(0.03) benign(0.187) TCGA-DD-A4NJ-01 2 113416962 113416962 A G SLC20A1 Silent p.K410K 0.32 TCGA-DD-A4NJ-01 2 113786633 113786633 A T IL36B Nonsense_Mutation p.C48* 0.16 TCGA-DD-A4NJ-01 2 121747764 121747764 G T GLI2 Missense_Mutation p.G1425V 0.39 tolerated(0.4) benign(0) TCGA-DD-A4NJ-01 2 131674421 131674421 A T ARHGEF4 5'UTR 0.32 TCGA-DD-A4NJ-01 2 179424403 179424403 T C TTN Missense_Mutation p.D28819G 0.16 TCGA-DD-A4NJ-01 2 189873705 189873705 G A COL3A1 Missense_Mutation p.G1194D 0.15 unknown(0) TCGA-DD-A4NJ-01 2 30980909 30980909 T C CAPN13 Intron 0.13 TCGA-DD-A4NJ-01 2 96803391 96803391 C T ASTL Missense_Mutation p.G35D 0.15 tolerated(0.35) benign(0.002) TCGA-DD-A4NJ-01 3 101383939 101383939 G A ZBTB11 Missense_Mutation p.P498S 0.11 tolerated_low_confidence(0.49) benign(0.001) TCGA-DD-A4NJ-01 3 112066565 112066565 T A CD200 Silent p.S219S 0.17 TCGA-DD-A4NJ-01 3 12861637 12861637 G C CAND2 Silent p.S999S 0.27 TCGA-DD-A4NJ-01 3 12861638 12861638 G T CAND2 Missense_Mutation p.D1000Y 0.27 deleterious(0) benign(0.417) TCGA-DD-A4NJ-01 3 183777775 183777775 C A HTR3C Missense_Mutation p.P362H 0.40 deleterious(0.01) probably_damaging(0.948) TCGA-DD-A4NJ-01 3 183777776 183777776 C A HTR3C Silent p.P362P 0.40 TCGA-DD-A4NJ-01 3 44442771 44442771 T A TCAIM Missense_Mutation p.W399R 0.34 tolerated(0.36) benign(0.054) TCGA-DD-A4NJ-01 3 48508185 48508185 T C TREX1 Missense_Mutation p.L99P 0.31 deleterious(0) probably_damaging(1) TCGA-DD-A4NJ-01 3 9911995 9911995 A G CIDEC Silent p.T83T 0.15 TCGA-DD-A4NJ-01 4 100844269 100844270 - T DNAJB14 Frame_Shift_Ins p.A127Sfs*3 0.21 TCGA-DD-A4NJ-01 4 104640550 104640550 C A TACR3 Missense_Mutation p.V95L 0.06 tolerated(0.32) possibly_damaging(0.53) TCGA-DD-A4NJ-01 4 138450774 138450774 G T PCDH18 Missense_Mutation p.H823Q 0.33 tolerated(0.25) benign(0.067) TCGA-DD-A4NJ-01 4 25370867 25370867 A G ZCCHC4 3'UTR 0.50 TCGA-DD-A4NJ-01 4 71847784 71847784 G A MOB1B 3'UTR 0.29 TCGA-DD-A4NJ-01 5 109976647 109976647 A T TMEM232 Silent p.P96P 0.29 TCGA-DD-A4NJ-01 5 112362884 112362884 C A MCC 3'Flank 0.33 TCGA-DD-A4NJ-01 5 140348025 140348025 A G PCDHAC2 Silent p.P558P 0.36 TCGA-DD-A4NJ-01 5 176732982 176732982 C G PRELID1 Silent p.V143V 0.28 TCGA-DD-A4NJ-01 5 179225329 179225329 C A MGAT4B Intron 0.23 TCGA-DD-A4NJ-01 5 3599429 3599429 T A IRX1 Missense_Mutation p.F123I 0.11 deleterious(0) possibly_damaging(0.879) TCGA-DD-A4NJ-01 5 79733987 79733987 T G ZFYVE16 Missense_Mutation p.C495G 0.05 tolerated(0.33) benign(0) TCGA-DD-A4NJ-01 6 117709158 117709158 A C ROS1 Nonsense_Mutation p.L600* 0.56 TCGA-DD-A4NJ-01 6 31623724 31623724 C T APOM 5'UTR 0.28 TCGA-DD-A4NJ-01 6 56494239 56494239 T A DST Missense_Mutation p.Q891H 0.37 benign(0.007) TCGA-DD-A4NJ-01 7 150878543 150878543 C T ASB10 Missense_Mutation p.C196Y 0.37 deleterious(0) probably_damaging(0.997) TCGA-DD-A4NJ-01 7 35013135 35013135 T C DPY19L1 Missense_Mutation p.H229R 0.28 tolerated(0.1) benign(0.012) TCGA-DD-A4NJ-01 7 35013143 35013143 T C DPY19L1 Silent p.L226L 0.29 TCGA-DD-A4NJ-01 7 44105137 44105137 C A PGAM2 5'UTR 0.20 TCGA-DD-A4NJ-01 7 94293118 94293118 G A PEG10 Missense_Mutation p.E84K 0.21 tolerated(0.08) benign(0.193) TCGA-DD-A4NJ-01 8 103324043 103324043 G C UBR5 Missense_Mutation p.Q780E 0.14 deleterious(0.01) possibly_damaging(0.759) TCGA-DD-A4NJ-01 8 131949435 131949435 G A ADCY8 Silent p.C455C 0.22 TCGA-DD-A4NJ-01 8 142231676 142231676 C T SLC45A4 Missense_Mutation p.G93S 0.20 tolerated(0.07) benign(0.019) TCGA-DD-A4NJ-01 8 142444054 142444054 G C PTP4A3 3'Flank 0.07 TCGA-DD-A4NJ-01 9 21838002 21838002 C T MTAP Missense_Mutation p.T148M 0.40 deleterious(0.03) possibly_damaging(0.823) TCGA-DD-A4NJ-01 9 96435949 96435949 C T PHF2 Silent p.L811L 0.35 TCGA-DD-A4NJ-01 X 107979138 107979138 C T IRS4 Missense_Mutation p.R146H 0.20 deleterious(0) probably_damaging(0.995) TCGA-DD-A4NJ-01 X 153034490 153034490 G A PLXNB3 Missense_Mutation p.D475N 0.05 deleterious(0.04) benign(0.386) TCGA-DD-A4NJ-01 X 54978366 54978366 T G PFKFB1 Missense_Mutation p.D273A 0.28 probably_damaging(0.999) TCGA-DD-A4NJ-01 X 5821238 5821238 G T NLGN4X Missense_Mutation p.P494H 0.22 deleterious(0) probably_damaging(1) TCGA-DD-A4NK-01 10 118351933 118351933 C T PNLIPRP1 Silent p.L70L 0.05 TCGA-DD-A4NK-01 10 55591092 55591092 A G PCDH15 Silent p.V1395V 0.38 TCGA-DD-A4NK-01 10 64022532 64022532 C T RTKN2 Missense_Mutation p.G37R 0.50 deleterious(0) probably_damaging(1) TCGA-DD-A4NK-01 10 95360550 95360550 G A RBP4 Missense_Mutation p.T41I 0.16 tolerated(0.16) benign(0.015) TCGA-DD-A4NK-01 11 56258001 56258001 A T OR5M8 Silent p.P282P 0.32 TCGA-DD-A4NK-01 11 62445539 62445539 T - UBXN1 Frame_Shift_Del p.E114Dfs*45 0.33 TCGA-DD-A4NK-01 11 70269063 70269063 G A CTTN Missense_Mutation p.G270S 0.39 deleterious(0.04) probably_damaging(1) TCGA-DD-A4NK-01 11 73020363 73020363 C A ARHGEF17 Missense_Mutation p.A227D 0.39 tolerated_low_confidence(0.08) benign(0.18) TCGA-DD-A4NK-01 12 104136328 104136328 T A STAB2 Nonsense_Mutation p.C2009* 0.06 TCGA-DD-A4NK-01 12 98909627 98909627 G A TMPO 5'UTR 0.05 TCGA-DD-A4NK-01 13 103343267 103343267 G T METTL21C Missense_Mutation p.P60T 0.42 deleterious(0) possibly_damaging(0.874) TCGA-DD-A4NK-01 13 39264849 39264849 G A FREM2 Missense_Mutation p.G1123D 0.11 deleterious(0.01) probably_damaging(0.965) TCGA-DD-A4NK-01 13 73468073 73468073 C A PIBF1 Missense_Mutation p.Q492K 0.30 deleterious(0.05) probably_damaging(0.968) TCGA-DD-A4NK-01 14 50074175 50074175 T A LRR1 Missense_Mutation p.C114S 0.26 tolerated(0.74) benign(0.002) TCGA-DD-A4NK-01 14 65252575 65252575 T C SPTB Missense_Mutation p.N1219S 0.46 tolerated(0.21) benign(0) TCGA-DD-A4NK-01 14 74706315 74706315 G A VSX2 Silent p.V17V 0.10 TCGA-DD-A4NK-01 15 41795385 41795385 G C ITPKA 3'UTR 0.35 TCGA-DD-A4NK-01 15 41988802 41988802 A T MGA Nonsense_Mutation p.K532* 0.10 TCGA-DD-A4NK-01 15 59499173 59499173 C A LDHAL6B Missense_Mutation p.Q12K 0.37 tolerated_low_confidence(0.62) benign(0) TCGA-DD-A4NK-01 15 88423567 88423567 G A NTRK3 Silent p.F756F 0.46 TCGA-DD-A4NK-01 16 15853534 15853534 G A MYH11 Missense_Mutation p.R441C 0.04 probably_damaging(0.959) TCGA-DD-A4NK-01 16 28846465 28846465 T A ATXN2L Silent p.P840P 0.32 TCGA-DD-A4NK-01 16 30005727 30005728 - T HIRIP3 Frame_Shift_Ins p.E247Rfs*6 0.28 TCGA-DD-A4NK-01 16 3254987 3254987 G A OR1F1 Silent p.V247V 0.29 TCGA-DD-A4NK-01 16 48396330 48396330 G A SIAH1 Nonsense_Mutation p.Q35* 0.38 TCGA-DD-A4NK-01 16 57507494 57507494 C G DOK4 Intron 0.05 TCGA-DD-A4NK-01 16 68842624 68842624 A G CDH1 Missense_Mutation p.K187R 0.39 tolerated(0.1) benign(0.027) TCGA-DD-A4NK-01 17 18945119 18945119 C T GRAP Splice_Site p.X59_splice 0.26 TCGA-DD-A4NK-01 17 26962490 26962490 T C KIAA0100 Silent p.A705A 0.03 TCGA-DD-A4NK-01 17 29665760 29665760 C A NF1 Missense_Mutation p.N2286K 0.04 deleterious(0.01) probably_damaging(0.968) TCGA-DD-A4NK-01 17 34079749 34079749 A T GAS2L2 Missense_Mutation p.W41R 0.08 deleterious(0) probably_damaging(1) TCGA-DD-A4NK-01 17 36876674 36876674 G A MLLT6 Silent p.R735R 0.35 TCGA-DD-A4NK-01 17 39116562 39116562 G A KRT39 Silent p.Y396Y 0.36 TCGA-DD-A4NK-01 17 44060964 44060964 T A MAPT Missense_Mutation p.I265N 0.34 deleterious(0.04) possibly_damaging(0.517) TCGA-DD-A4NK-01 17 73998495 73998495 A G CDK3 Missense_Mutation p.H161R 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-DD-A4NK-01 18 43253729 43253729 G A SLC14A2 Missense_Mutation p.G820E 0.04 deleterious(0) probably_damaging(1) TCGA-DD-A4NK-01 18 48510804 48510804 C A ELAC1 Missense_Mutation p.L166I 0.50 tolerated(0.4) benign(0.058) TCGA-DD-A4NK-01 18 61653503 61653503 G T SERPINB8 Intron 0.38 TCGA-DD-A4NK-01 19 17799279 17799279 G T UNC13A 5'Flank 0.08 TCGA-DD-A4NK-01 19 38912649 38912649 G A RASGRP4 Silent p.C56C 0.41 TCGA-DD-A4NK-01 19 44676265 44676265 G T ZNF226 Missense_Mutation p.A14S 0.37 deleterious(0.01) probably_damaging(0.953) TCGA-DD-A4NK-01 19 50881836 50881836 C A NR1H2 Nonsense_Mutation p.S177* 0.39 TCGA-DD-A4NK-01 19 57134448 57134448 C T ZNF71 3'UTR 0.43 TCGA-DD-A4NK-01 19 5789643 5789643 C A DUS3L Missense_Mutation p.G159C 0.54 deleterious(0) probably_damaging(0.988) TCGA-DD-A4NK-01 19 8138130 8138130 C T FBN3 Missense_Mutation p.R2585H 0.06 tolerated(0.88) benign(0.001) TCGA-DD-A4NK-01 1 145248824 145248824 C G NOTCH2NL 5'UTR 0.06 TCGA-DD-A4NK-01 1 145416462 145416462 C A HFE2 Missense_Mutation p.N269K 0.28 tolerated(0.83) benign(0.124) TCGA-DD-A4NK-01 1 145477136 145477136 G T LIX1L 5'UTR 0.27 TCGA-DD-A4NK-01 1 16051919 16051919 G A PLEKHM2 Missense_Mutation p.E274K 0.39 deleterious_low_confidence(0.01) benign(0.194) TCGA-DD-A4NK-01 1 223177045 223177045 A G DISP1 Missense_Mutation p.K769R 0.58 tolerated(0.7) benign(0.139) TCGA-DD-A4NK-01 1 228526698 228526698 T C OBSCN Silent p.N6700N 0.30 TCGA-DD-A4NK-01 1 248551236 248551236 G T OR2T6 Silent p.G109G 0.35 TCGA-DD-A4NK-01 1 38082337 38082337 C T RSPO1 Silent p.E35E 0.39 TCGA-DD-A4NK-01 1 39920643 39920643 T A MACF1 Silent p.A4924A 0.07 TCGA-DD-A4NK-01 1 44415602 44415602 G A IPO13 Missense_Mutation p.A200T 0.40 tolerated(0.63) benign(0.004) TCGA-DD-A4NK-01 1 49208383 49208383 C T BEND5 Missense_Mutation p.R269Q 0.19 tolerated(1) benign(0) TCGA-DD-A4NK-01 20 30193820 30193820 C T ID1 Intron 0.40 TCGA-DD-A4NK-01 21 11039196 11039196 T C BAGE2 RNA 0.09 TCGA-DD-A4NK-01 21 41416175 41416175 G T DSCAM Missense_Mutation p.A1738D 0.41 deleterious(0.01) benign(0.174) TCGA-DD-A4NK-01 21 46047076 46047076 T C KRTAP10-9 5'UTR 0.23 TCGA-DD-A4NK-01 22 19481906 19481906 G T CDC45 Splice_Site p.X181_splice 0.33 TCGA-DD-A4NK-01 22 23241818 23241818 C T IGLL5 3'Flank 0.31 TCGA-DD-A4NK-01 22 38212648 38212648 G A GCAT Missense_Mutation p.V421M 0.35 deleterious(0) benign(0.034) TCGA-DD-A4NK-01 22 38369604 38369604 C T SOX10 Silent p.R433R 0.38 TCGA-DD-A4NK-01 2 116534805 116534805 G A DPP10 Missense_Mutation p.V419M 0.05 tolerated(0.09) benign(0.091) TCGA-DD-A4NK-01 2 128462216 128462216 T C WDR33 3'UTR 0.33 TCGA-DD-A4NK-01 2 148684653 148684659 TGGCAAT - ACVR2A Frame_Shift_Del p.M451Sfs*23 0.24 TCGA-DD-A4NK-01 2 207040977 207040977 C T GPR1 Missense_Mutation p.C332Y 0.40 tolerated(1) benign(0.169) TCGA-DD-A4NK-01 2 233345176 233345176 T C ECEL1 Missense_Mutation p.I721V 0.42 tolerated(0.7) benign(0.127) TCGA-DD-A4NK-01 2 3217959 3217959 G A TSSC1 Silent p.I159I 0.41 TCGA-DD-A4NK-01 2 63282703 63282703 G T OTX1 Missense_Mutation p.R106L 0.37 deleterious(0.01) possibly_damaging(0.863) TCGA-DD-A4NK-01 2 63832431 63832431 C T MDH1 Silent p.G249G 0.42 TCGA-DD-A4NK-01 2 80801440 80801440 G T CTNNA2 Splice_Site p.X631_splice 0.34 TCGA-DD-A4NK-01 2 97360146 97360146 G A FER1L5 RNA 0.33 TCGA-DD-A4NK-01 2 99858781 99858781 G A LYG2 3'UTR 0.30 TCGA-DD-A4NK-01 3 14548392 14548392 C T GRIP2 RNA 0.46 TCGA-DD-A4NK-01 3 172643141 172643141 A T SPATA16 Missense_Mutation p.F408Y 0.35 deleterious(0.03) benign(0.294) TCGA-DD-A4NK-01 3 190126207 190126207 G A CLDN16 Missense_Mutation p.G233S 0.33 deleterious(0.01) probably_damaging(0.979) TCGA-DD-A4NK-01 3 32757737 32757737 A G CNOT10 Silent p.K258K 0.44 TCGA-DD-A4NK-01 3 41266137 41266137 C A CTNNB1 Missense_Mutation p.S45Y 0.48 deleterious(0) probably_damaging(0.968) TCGA-DD-A4NK-01 3 5025203 5025203 C T BHLHE40 Silent p.L355L 0.37 TCGA-DD-A4NK-01 4 100235183 100235183 G A ADH1B Missense_Mutation p.A208V 0.23 tolerated(1) benign(0.001) TCGA-DD-A4NK-01 4 100264201 100264201 C G ADH1C Silent p.G193G 0.06 TCGA-DD-A4NK-01 4 126372517 126372517 A T FAT4 Missense_Mutation p.E3449V 0.04 possibly_damaging(0.493) TCGA-DD-A4NK-01 4 126400895 126400895 G A FAT4 Splice_Site p.X4158_splice 0.31 TCGA-DD-A4NK-01 4 15709230 15709230 G A BST1 Missense_Mutation p.A138T 0.39 deleterious(0.04) possibly_damaging(0.751) TCGA-DD-A4NK-01 4 69343131 69343131 T C TMPRSS11E Missense_Mutation p.I251T 0.43 deleterious(0) possibly_damaging(0.503) TCGA-DD-A4NK-01 4 74274521 74274524 AAGT - ALB Splice_Site p.X161_splice 0.32 TCGA-DD-A4NK-01 5 112926896 112926896 C T YTHDC2 Silent p.S1328S 0.25 TCGA-DD-A4NK-01 5 137734001 137734001 A G KDM3B Missense_Mutation p.Y989C 0.33 deleterious(0) probably_damaging(0.997) TCGA-DD-A4NK-01 5 167674450 167674450 G A TENM2 Missense_Mutation p.R2169Q 0.03 deleterious(0.01) probably_damaging(0.998) TCGA-DD-A4NK-01 5 177309375 177309375 C G RP11-423H2.1 RNA 0.27 TCGA-DD-A4NK-01 5 5463008 5463008 T A KIAA0947 Nonsense_Mutation p.Y1187* 0.27 TCGA-DD-A4NK-01 5 54763977 54763977 T C PPAP2A Missense_Mutation p.I72V 0.26 tolerated(0.26) benign(0.007) TCGA-DD-A4NK-01 5 74981292 74981292 T G POC5 Missense_Mutation p.N383H 0.58 tolerated(0.11) probably_damaging(0.991) TCGA-DD-A4NK-01 6 146275926 146275926 T A SHPRH Missense_Mutation p.E178V 0.74 deleterious_low_confidence(0) benign(0.185) TCGA-DD-A4NK-01 6 30627293 30627293 T C DHX16 Missense_Mutation p.M655V 0.24 deleterious(0.01) unknown(0) TCGA-DD-A4NK-01 6 42957352 42957352 C T PPP2R5D Missense_Mutation p.P11S 0.28 tolerated_low_confidence(0.71) benign(0) TCGA-DD-A4NK-01 6 46620284 46620284 C T CYP39A1 Silent p.L12L 0.28 TCGA-DD-A4NK-01 7 100344318 100344318 A T ZAN Silent p.S308S 0.56 TCGA-DD-A4NK-01 7 2294745 2294745 G C SNX8 Missense_Mutation p.H448Q 0.18 tolerated(0.58) benign(0.01) TCGA-DD-A4NK-01 7 24758744 24758744 C T DFNA5 Silent p.Q166Q 0.14 TCGA-DD-A4NK-01 7 4153733 4153733 G A SDK1 Missense_Mutation p.R1217H 0.22 deleterious(0) probably_damaging(0.967) TCGA-DD-A4NK-01 7 48287835 48287835 G T ABCA13 Splice_Site p.X554_splice 0.69 TCGA-DD-A4NK-01 7 72658191 72658191 T C GTF2IRD2P1 RNA 0.30 TCGA-DD-A4NK-01 7 87912273 87912273 C T STEAP4 Missense_Mutation p.V223I 0.48 tolerated(0.3) benign(0.021) TCGA-DD-A4NK-01 7 99022509 99022509 C T ATP5J2-PTCD1 Missense_Mutation p.R598K 0.27 tolerated(0.14) benign(0.12) TCGA-DD-A4NK-01 8 142221523 142221523 G T SLC45A4 3'UTR 0.54 TCGA-DD-A4NK-01 8 145537998 145537998 C A HSF1 3'UTR 0.32 TCGA-DD-A4NK-01 8 54792096 54792096 G A RGS20 Silent p.R148R 0.57 TCGA-DD-A4NK-01 8 55540553 55540553 G C RP1 Missense_Mutation p.D1371H 0.56 deleterious(0) benign(0.214) TCGA-DD-A4NK-01 9 113509934 113509934 C G MUSK Missense_Mutation p.S256C 0.36 deleterious(0) probably_damaging(0.987) TCGA-DD-A4NK-01 9 139902271 139902271 C A ABCA2 3'UTR 0.43 TCGA-DD-A4NK-01 9 139902272 139902272 C A ABCA2 3'UTR 0.43 TCGA-DD-A4NK-01 9 140099480 140099491 CATGAGCAGCTG - TMEM203 In_Frame_Del p.Q126_M129del 0.29 TCGA-DD-A4NK-01 9 18777771 18777771 G A ADAMTSL1 Missense_Mutation p.V1182I 0.17 tolerated(0.44) possibly_damaging(0.773) TCGA-DD-A4NK-01 9 72131731 72131731 C T APBA1 Silent p.Q132Q 0.46 TCGA-DD-A4NK-01 9 95738644 95738644 C T FGD3 Missense_Mutation p.P36S 0.35 tolerated_low_confidence(0.08) probably_damaging(0.999) TCGA-DD-A4NK-01 9 98231224 98231224 C A PTCH1 Missense_Mutation p.V687L 0.34 tolerated(0.33) benign(0.102) TCGA-DD-A4NK-01 X 149671633 149671633 G C MAMLD1 Intron 0.37 TCGA-DD-A4NK-01 X 153135689 153135689 C A L1CAM Silent p.T271T 0.27 TCGA-DD-A4NK-01 X 54566597 54566597 C A GNL3L Silent p.T37T 0.34 TCGA-DD-A4NK-01 X 76938217 76938217 G A ATRX Missense_Mutation p.T844I 0.36 benign(0.037) TCGA-DD-A4NL-01 10 112541163 112541163 C A RBM20 Missense_Mutation p.H266N 0.07 tolerated(0.12) benign(0.223) TCGA-DD-A4NL-01 12 10541390 10541390 C T KLRK1 Missense_Mutation p.R7Q 0.19 deleterious(0.04) possibly_damaging(0.866) TCGA-DD-A4NL-01 12 109192892 109192892 T C SSH1 Silent p.E411E 0.06 TCGA-DD-A4NL-01 12 11150077 11150077 A G TAS2R20 Missense_Mutation p.V133A 0.17 deleterious(0.02) benign(0.103) TCGA-DD-A4NL-01 12 69753774 69753774 T C YEATS4 Missense_Mutation p.F8L 0.28 tolerated(0.14) benign(0.006) TCGA-DD-A4NL-01 14 70713741 70713741 C T ADAM21P1 RNA 0.10 TCGA-DD-A4NL-01 14 70924853 70924853 G A ADAM21 Missense_Mutation p.V213I 0.15 tolerated(0.07) benign(0.076) TCGA-DD-A4NL-01 15 45814342 45814342 C A SLC30A4 Missense_Mutation p.A71S 0.24 tolerated(0.4) benign(0.001) TCGA-DD-A4NL-01 15 54914613 54914613 A G UNC13C Silent p.V2065V 0.22 TCGA-DD-A4NL-01 16 31896503 31896503 A T ZNF267 Missense_Mutation p.D51V 0.23 deleterious(0.02) possibly_damaging(0.852) TCGA-DD-A4NL-01 19 52196648 52196648 C A SPACA6P RNA 0.09 TCGA-DD-A4NL-01 19 59074590 59074612 CCCCGCCCCCAGTGCTGGGGCGG - MZF1 Frame_Shift_Del p.R345Gfs*2 0.31 TCGA-DD-A4NL-01 1 104120169 104120169 A G AMY2B Missense_Mutation p.I387V 0.37 tolerated(0.1) benign(0.007) TCGA-DD-A4NL-01 1 155226183 155226183 C G SCAMP3 Missense_Mutation p.A309P 0.24 deleterious(0) possibly_damaging(0.903) TCGA-DD-A4NL-01 1 226047035 226047035 A G TMEM63A Missense_Mutation p.I413T 0.17 deleterious(0.03) benign(0.006) TCGA-DD-A4NL-01 1 237947912 237947912 C T RYR2 Silent p.S4300S 0.23 TCGA-DD-A4NL-01 1 31654558 31654558 A T NKAIN1 Missense_Mutation p.S206T 0.28 tolerated(0.11) benign(0.001) TCGA-DD-A4NL-01 1 33745866 33745866 T A ZNF362 Missense_Mutation p.I164N 0.06 deleterious(0.03) possibly_damaging(0.471) TCGA-DD-A4NL-01 20 45242105 45242105 G C SLC13A3 Missense_Mutation p.P124R 0.21 deleterious(0) probably_damaging(1) TCGA-DD-A4NL-01 22 18604415 18604415 A T TUBA8 Missense_Mutation p.N58I 0.26 deleterious_low_confidence(0.01) benign(0.016) TCGA-DD-A4NL-01 22 22843497 22843497 T A ZNF280B Missense_Mutation p.D76V 0.07 deleterious(0) benign(0.016) TCGA-DD-A4NL-01 22 44892793 44892793 C A LDOC1L Missense_Mutation p.G215V 0.26 deleterious_low_confidence(0) benign(0.213) TCGA-DD-A4NL-01 2 102792895 102792895 C G IL1R1 Missense_Mutation p.S462R 0.28 tolerated(0.1) benign(0.056) TCGA-DD-A4NL-01 2 241697828 241697828 G T KIF1A Missense_Mutation p.T844N 0.07 deleterious(0) possibly_damaging(0.586) TCGA-DD-A4NL-01 3 142840928 142840928 C T CHST2 Missense_Mutation p.R424W 0.07 deleterious(0) probably_damaging(0.991) TCGA-DD-A4NL-01 3 41268766 41268766 A T CTNNB1 Missense_Mutation p.K335I 0.25 deleterious(0) probably_damaging(0.957) TCGA-DD-A4NL-01 4 44176930 44176930 C T KCTD8 Silent p.K433K 0.09 TCGA-DD-A4NL-01 4 6083468 6083468 T C JAKMIP1 Silent p.R323R 0.07 TCGA-DD-A4NL-01 5 32074424 32074424 G T PDZD2 Missense_Mutation p.G1071V 0.23 deleterious(0.01) possibly_damaging(0.729) TCGA-DD-A4NL-01 5 55260056 55260067 GACAAAATACAC - IL6ST In_Frame_Del p.V189_V192del 0.14 TCGA-DD-A4NL-01 6 30624804 30624804 A G DHX16 Silent p.D691D 0.32 TCGA-DD-A4NL-01 6 97711252 97711252 T C MMS22L Missense_Mutation p.I301V 0.15 tolerated(0.06) probably_damaging(0.949) TCGA-DD-A4NL-01 7 100402889 100402889 A T EPHB4 Silent p.S911S 0.08 TCGA-DD-A4NL-01 7 151927100 151927100 C A KMT2C Missense_Mutation p.V962F 0.04 probably_damaging(1) TCGA-DD-A4NL-01 9 109687663 109687663 G T ZNF462 Missense_Mutation p.Q490H 0.32 benign(0.216) TCGA-DD-A4NL-01 9 133556672 133556672 G T PRDM12 Silent p.A240A 0.07 TCGA-DD-A4NL-01 9 84268895 84268895 A C TLE1 Silent p.S97S 0.07 TCGA-DD-A4NL-01 9 99007649 99007649 T C HSD17B3 Missense_Mutation p.Y195C 0.06 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NL-01 X 107037878 107037878 G T NCBP2L Missense_Mutation p.G143V 0.08 deleterious(0) probably_damaging(0.953) TCGA-DD-A4NN-01 10 82280171 82280171 G A TSPAN14 3'UTR 0.33 TCGA-DD-A4NN-01 11 18369105 18369105 A T GTF2H1 Intron 0.30 TCGA-DD-A4NN-01 11 20083871 20083871 C T NAV2 Missense_Mutation p.S1673F 0.54 deleterious(0) probably_damaging(0.997) TCGA-DD-A4NN-01 11 22777439 22777439 C G GAS2 Missense_Mutation p.F221L 0.27 tolerated(0.11) benign(0.438) TCGA-DD-A4NN-01 12 48579591 48579591 G T C12orf68 3'UTR 0.38 TCGA-DD-A4NN-01 12 50529577 50529577 G A CERS5 Silent p.D270D 0.38 TCGA-DD-A4NN-01 12 58125709 58125709 G A AGAP2 Silent p.L612L 0.47 TCGA-DD-A4NN-01 12 81657137 81657137 G T PPFIA2 Silent p.T1196T 0.03 TCGA-DD-A4NN-01 13 78474006 78474006 T C EDNRB Silent p.K484K 0.78 TCGA-DD-A4NN-01 15 37184360 37184360 T G MEIS2 3'UTR 0.31 TCGA-DD-A4NN-01 15 54914531 54914531 C - UNC13C Frame_Shift_Del p.S2039Pfs*27 0.24 TCGA-DD-A4NN-01 16 30525112 30525112 A G ITGAL Missense_Mutation p.Y936C 0.55 deleterious(0) probably_damaging(0.997) TCGA-DD-A4NN-01 16 31282347 31282347 G A ITGAM Missense_Mutation p.R167Q 0.31 tolerated(1) benign(0) TCGA-DD-A4NN-01 16 56548459 56548459 T A BBS2 Missense_Mutation p.N84I 0.77 tolerated(0.17) benign(0.074) TCGA-DD-A4NN-01 17 10315757 10315757 T A MYH8 Missense_Mutation p.Q449L 0.42 tolerated(0.06) benign(0.082) TCGA-DD-A4NN-01 17 38991735 38991735 A G TMEM99 3'UTR 0.36 TCGA-DD-A4NN-01 17 909373 909374 - G ABR Frame_Shift_Ins p.I843Hfs*46 0.33 TCGA-DD-A4NN-01 18 34340646 34340647 - GT FHOD3 Frame_Shift_Ins p.E1326Gfs*6 0.39 TCGA-DD-A4NN-01 18 51863589 51863589 G T STARD6 Missense_Mutation p.P58Q 0.10 deleterious(0.01) possibly_damaging(0.46) TCGA-DD-A4NN-01 18 64239420 64239420 G C CDH19 Missense_Mutation p.R8G 0.53 tolerated(0.33) benign(0.007) TCGA-DD-A4NN-01 19 11534579 11534580 - T CCDC151 Frame_Shift_Ins p.V362Gfs*8 0.11 TCGA-DD-A4NN-01 19 1456316 1456316 G A APC2 Silent p.A243A 0.33 TCGA-DD-A4NN-01 19 15349580 15349580 C A BRD4 Nonsense_Mutation p.E1332* 0.50 TCGA-DD-A4NN-01 19 16636060 16636060 G C CHERP Missense_Mutation p.F578L 0.35 tolerated_low_confidence(0.14) possibly_damaging(0.834) TCGA-DD-A4NN-01 19 17448375 17448376 - AGCC GTPBP3 5'UTR 0.23 TCGA-DD-A4NN-01 19 21366647 21366647 G A ZNF431 Missense_Mutation p.C514Y 0.32 deleterious(0.02) benign(0.039) TCGA-DD-A4NN-01 19 37130125 37130125 T A ZNF461 Silent p.I374I 0.44 TCGA-DD-A4NN-01 19 37642633 37642633 C A ZNF585A Missense_Mutation p.C668F 0.39 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NN-01 19 50191566 50191566 C G PRMT1 3'UTR 0.67 TCGA-DD-A4NN-01 19 54696036 54696036 A G TSEN34 Missense_Mutation p.Q186R 0.49 deleterious(0.01) probably_damaging(0.971) TCGA-DD-A4NN-01 19 58384077 58384077 G C ZNF814 3'UTR 0.33 TCGA-DD-A4NN-01 1 151110260 151110260 T C SEMA6C Missense_Mutation p.Q228R 0.05 deleterious(0) benign(0) TCGA-DD-A4NN-01 1 153277442 153277442 G T PGLYRP3 Silent p.A119A 0.19 TCGA-DD-A4NN-01 1 156828374 156828381 GCAGGCAT - INSRR Frame_Shift_Del p.L13Dfs*104 0.09 TCGA-DD-A4NN-01 1 158622406 158622406 G A SPTA1 Missense_Mutation p.R1076C 0.36 tolerated(0.06) benign(0.064) TCGA-DD-A4NN-01 1 158624516 158624516 T C SPTA1 Missense_Mutation p.E974G 0.15 tolerated(0.35) benign(0.032) TCGA-DD-A4NN-01 1 161044015 161044015 G A PVRL4 Silent p.T383T 0.20 TCGA-DD-A4NN-01 1 174417683 174417683 A T GPR52 Missense_Mutation p.K145M 0.39 deleterious(0) probably_damaging(0.992) TCGA-DD-A4NN-01 1 181479711 181479711 G A CACNA1E Missense_Mutation p.R122Q 0.16 tolerated(0.1) benign(0.238) TCGA-DD-A4NN-01 1 186086707 186086707 G A HMCN1 Missense_Mutation p.G3934S 0.32 probably_damaging(0.999) TCGA-DD-A4NN-01 1 223968572 223968572 G C TP53BP2 Missense_Mutation p.Q1130E 0.07 deleterious(0) probably_damaging(0.968) TCGA-DD-A4NN-01 20 30309743 30309743 T A BCL2L1 Silent p.A93A 0.30 TCGA-DD-A4NN-01 20 3145047 3145047 G A LZTS3 3'UTR 0.18 TCGA-DD-A4NN-01 20 49508566 49508566 A C ADNP Silent p.P895P 0.53 TCGA-DD-A4NN-01 21 28210546 28210546 T C ADAMTS1 Silent p.E752E 0.45 TCGA-DD-A4NN-01 21 34721747 34721747 T C IFNAR1 Silent p.H347H 0.46 TCGA-DD-A4NN-01 22 36545151 36545151 T C APOL3 Intron 0.38 TCGA-DD-A4NN-01 2 101580582 101580590 GGAAAGGAG - NPAS2 In_Frame_Del p.G221_E223del 0.26 TCGA-DD-A4NN-01 2 196891544 196891544 T C DNAH7 Missense_Mutation p.I203V 0.50 tolerated(0.2) benign(0.005) TCGA-DD-A4NN-01 2 237032725 237032725 A G AGAP1 Missense_Mutation p.N845D 0.46 tolerated(0.14) benign(0.001) TCGA-DD-A4NN-01 3 196731069 196731069 C G MFI2 Intron 0.51 TCGA-DD-A4NN-01 3 79174651 79174651 G A ROBO1 Missense_Mutation p.P43S 0.44 tolerated_low_confidence(0.65) benign(0.403) TCGA-DD-A4NN-01 4 177058704 177058704 G A WDR17 Missense_Mutation p.R458Q 0.79 tolerated(0.12) benign(0.004) TCGA-DD-A4NN-01 4 84457903 84457903 T A AGPAT9 Missense_Mutation p.V43E 0.79 deleterious(0.01) possibly_damaging(0.534) TCGA-DD-A4NN-01 4 85724505 85724505 G A WDFY3 Missense_Mutation p.P849S 0.73 tolerated(0.32) possibly_damaging(0.831) TCGA-DD-A4NN-01 5 10391780 10391780 G C MARCH6 Missense_Mutation p.D235H 0.23 tolerated(0.13) benign(0.117) TCGA-DD-A4NN-01 5 139060853 139060853 C G CXXC5 Missense_Mutation p.L249V 0.06 tolerated(0.07) probably_damaging(0.991) TCGA-DD-A4NN-01 5 176940709 176940709 G T DDX41 Missense_Mutation p.R359S 0.48 deleterious(0.03) benign(0.007) TCGA-DD-A4NN-01 5 75427868 75427868 G T SV2C Missense_Mutation p.S98I 0.42 tolerated(0.05) benign(0.094) TCGA-DD-A4NN-01 5 7706898 7706910 TGGGCGTGCATTC - ADCY2 Frame_Shift_Del p.V386Mfs*6 0.36 TCGA-DD-A4NN-01 6 136589436 136589436 G A BCLAF1 Missense_Mutation p.S754F 0.10 deleterious(0.02) possibly_damaging(0.683) TCGA-DD-A4NN-01 6 168396642 168396642 G T KIF25 5'Flank 0.92 TCGA-DD-A4NN-01 6 29408254 29408254 G - OR10C1 Frame_Shift_Del p.L156Wfs*89 0.23 TCGA-DD-A4NN-01 6 49755000 49755000 C G PGK2 5'UTR 0.26 TCGA-DD-A4NN-01 7 11633070 11633070 C T THSD7A Missense_Mutation p.C361Y 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-DD-A4NN-01 7 139876582 139876582 C G KDM7A Missense_Mutation p.M52I 0.35 deleterious(0.04) possibly_damaging(0.492) TCGA-DD-A4NN-01 7 47876604 47876604 T C PKD1L1 Missense_Mutation p.H1953R 0.22 tolerated(0.17) benign(0.084) TCGA-DD-A4NN-01 7 53103948 53103948 C G POM121L12 Missense_Mutation p.P195R 0.45 deleterious(0.01) probably_damaging(0.985) TCGA-DD-A4NN-01 7 73020062 73020062 A C MLXIPL Missense_Mutation p.L286R 0.45 deleterious(0.02) possibly_damaging(0.735) TCGA-DD-A4NN-01 8 145741755 145741755 C G RECQL4 Missense_Mutation p.G250R 0.30 tolerated(0.18) benign(0.048) TCGA-DD-A4NN-01 8 16850701 16850701 G A FGF20 Silent p.D172D 0.34 TCGA-DD-A4NN-01 8 2054129 2054129 T C MYOM2 Silent p.C944C 0.61 TCGA-DD-A4NN-01 8 27472180 27472180 G A CLU 5'UTR 0.83 TCGA-DD-A4NN-01 8 48309166 48309166 A T SPIDR Silent p.S252S 0.45 TCGA-DD-A4NN-01 9 130941315 130941315 C T CIZ1 Missense_Mutation p.V391M 0.46 tolerated_low_confidence(0.16) benign(0.099) TCGA-DD-A4NN-01 9 429834 429834 T C DOCK8 Missense_Mutation p.F1536L 0.32 tolerated(0.06) benign(0.103) TCGA-DD-A4NN-01 X 107335012 107335012 G T ATG4A 5'UTR 0.30 TCGA-DD-A4NN-01 X 31747756 31747756 G A DMD Missense_Mutation p.T2551M 0.33 possibly_damaging(0.897) TCGA-DD-A4NN-01 X 75649900 75649900 G A MAGEE1 Missense_Mutation p.R526H 0.27 deleterious(0.04) benign(0.051) TCGA-DD-A4NO-01 10 102265220 102265221 - A SEC31B Frame_Shift_Ins p.P361Tfs*25 0.18 TCGA-DD-A4NO-01 10 50022050 50022050 G A WDFY4 Missense_Mutation p.E1755K 0.21 tolerated(0.26) benign(0.211) TCGA-DD-A4NO-01 11 18387459 18387459 A G GTF2H1 3'UTR 0.41 TCGA-DD-A4NO-01 11 34189528 34189528 T G ABTB2 Silent p.P525P 0.16 TCGA-DD-A4NO-01 11 46921839 46921839 T A LRP4 Missense_Mutation p.E97V 0.40 tolerated(0.09) benign(0.046) TCGA-DD-A4NO-01 11 61547742 61547742 G C MYRF Missense_Mutation p.E795D 0.18 tolerated(0.35) probably_damaging(0.992) TCGA-DD-A4NO-01 11 67413176 67413176 C T ACY3 Missense_Mutation p.C140Y 0.49 tolerated(0.42) probably_damaging(0.953) TCGA-DD-A4NO-01 11 85376128 85376128 G A CREBZF 5'UTR 0.16 TCGA-DD-A4NO-01 12 107393336 107393336 C G CRY1 Missense_Mutation p.G377A 0.36 deleterious(0) probably_damaging(1) TCGA-DD-A4NO-01 12 112601506 112601506 C T HECTD4 Missense_Mutation p.R4100Q 0.33 probably_damaging(0.992) TCGA-DD-A4NO-01 12 53216820 53216820 A G KRT79 Silent p.L449L 0.27 TCGA-DD-A4NO-01 12 63977667 63977667 G C DPY19L2 Intron 0.20 TCGA-DD-A4NO-01 13 103705045 103705045 A T SLC10A2 Silent p.V170V 0.25 TCGA-DD-A4NO-01 13 77566254 77566254 G C CLN5 Silent p.T56T 0.14 TCGA-DD-A4NO-01 14 35255190 35255190 A G BAZ1A Silent p.L542L 0.20 TCGA-DD-A4NO-01 15 63029258 63029258 T G TLN2 Missense_Mutation p.D1180E 0.20 deleterious(0.05) benign(0.013) TCGA-DD-A4NO-01 15 85400702 85400702 A C ALPK3 Silent p.T1113T 0.53 TCGA-DD-A4NO-01 16 20344665 20344665 A T UMOD Missense_Mutation p.S632T 0.03 tolerated(1) unknown(0) TCGA-DD-A4NO-01 16 67709857 67709857 A G GFOD2 Missense_Mutation p.V120A 0.29 deleterious(0.03) benign(0.045) TCGA-DD-A4NO-01 17 60064481 60064481 G A MED13 Missense_Mutation p.R758C 0.28 tolerated(0.08) benign(0.022) TCGA-DD-A4NO-01 17 80040554 80040554 C T FASN Missense_Mutation p.G1923D 0.50 deleterious(0) probably_damaging(0.996) TCGA-DD-A4NO-01 18 34647263 34647263 G C KIAA1328 Missense_Mutation p.K329N 0.08 tolerated(0.25) benign(0.168) TCGA-DD-A4NO-01 18 8247842 8247842 G T PTPRM Splice_Site p.X818_splice 0.17 TCGA-DD-A4NO-01 19 17720864 17720864 G A UNC13A Missense_Mutation p.R1566W 0.37 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NO-01 19 2427289 2427289 C T TIMM13 Missense_Mutation p.G52R 0.31 tolerated(0.36) benign(0.419) TCGA-DD-A4NO-01 19 39914693 39914693 G A PLEKHG2 Missense_Mutation p.D974N 0.49 deleterious_low_confidence(0) benign(0.282) TCGA-DD-A4NO-01 19 50363651 50363651 G A PTOV1 3'UTR 0.64 TCGA-DD-A4NO-01 1 11771928 11771928 C A DRAXIN Missense_Mutation p.D221E 0.15 tolerated(0.37) benign(0.128) TCGA-DD-A4NO-01 1 118455267 118455267 T A GDAP2 Missense_Mutation p.N119Y 0.49 deleterious(0.01) probably_damaging(0.956) TCGA-DD-A4NO-01 1 118455268 118455268 G T GDAP2 Missense_Mutation p.F118L 0.49 deleterious(0.03) benign(0.441) TCGA-DD-A4NO-01 1 15639652 15639652 A G FHAD1 Missense_Mutation p.K86R 0.14 tolerated(0.45) probably_damaging(0.986) TCGA-DD-A4NO-01 1 158747387 158747387 C A OR6N2 Silent p.V13V 0.28 TCGA-DD-A4NO-01 1 203702358 203702358 T C ATP2B4 Intron 0.16 TCGA-DD-A4NO-01 1 211486854 211486854 T A RCOR3 Missense_Mutation p.L469Q 0.34 tolerated(0.09) possibly_damaging(0.748) TCGA-DD-A4NO-01 1 244218375 244218375 C A ZBTB18 Silent p.T433T 0.47 TCGA-DD-A4NO-01 20 31600638 31600638 G A BPIFB2 Missense_Mutation p.R78H 0.13 tolerated(1) benign(0.003) TCGA-DD-A4NO-01 20 49577765 49577765 T C MOCS3 3'UTR 0.08 TCGA-DD-A4NO-01 20 60893664 60893664 T G LAMA5 Missense_Mutation p.E2362A 0.10 benign(0.023) TCGA-DD-A4NO-01 22 29440871 29440871 G A ZNRF3 Missense_Mutation p.R246H 0.29 tolerated(0.15) probably_damaging(0.999) TCGA-DD-A4NO-01 2 131522049 131522049 C T AMER3 Missense_Mutation p.R802W 0.22 tolerated(0.21) benign(0) TCGA-DD-A4NO-01 2 178098809 178098809 T A NFE2L2 Missense_Mutation p.E79V 0.38 deleterious(0) probably_damaging(1) TCGA-DD-A4NO-01 2 178098810 178098810 C A NFE2L2 Nonsense_Mutation p.E79* 0.40 TCGA-DD-A4NO-01 2 209217426 209217426 A - PIKFYVE Frame_Shift_Del p.K1922Rfs*11 0.24 TCGA-DD-A4NO-01 2 220342149 220342149 G T SPEG Nonsense_Mutation p.E1571* 0.41 TCGA-DD-A4NO-01 2 225653873 225653873 C A DOCK10 Nonsense_Mutation p.G1776* 0.50 TCGA-DD-A4NO-01 2 24299188 24299188 G T SF3B14 5'UTR 0.36 TCGA-DD-A4NO-01 2 55402927 55402927 T C CLHC1 Nonstop_Mutation p.*587Wext*7 0.42 TCGA-DD-A4NO-01 2 73681090 73681090 T A ALMS1 Missense_Mutation p.L2478Q 0.05 probably_damaging(1) TCGA-DD-A4NO-01 3 108373044 108373044 C T DZIP3 Missense_Mutation p.H696Y 0.29 tolerated_low_confidence(0.31) benign(0) TCGA-DD-A4NO-01 3 45730900 45730900 G T SACM1L 5'UTR 0.41 TCGA-DD-A4NO-01 3 57542702 57542702 A C PDE12 Missense_Mutation p.K199T 0.35 deleterious(0.01) benign(0.011) TCGA-DD-A4NO-01 3 66465346 66465346 T C LRIG1 Silent p.Q215Q 0.27 TCGA-DD-A4NO-01 3 88189316 88189316 G A ZNF654 Missense_Mutation p.A286T 0.26 tolerated(0.11) benign(0.129) TCGA-DD-A4NO-01 4 146695657 146695657 C G ZNF827 Splice_Site p.X954_splice 0.29 TCGA-DD-A4NO-01 4 190878650 190878650 T C FRG1 Missense_Mutation p.M177T 0.02 deleterious(0.03) possibly_damaging(0.607) TCGA-DD-A4NO-01 4 3123007 3123007 C A HTT Missense_Mutation p.T374N 0.39 benign(0.414) TCGA-DD-A4NO-01 4 39229836 39229836 G T WDR19 Missense_Mutation p.D546Y 0.05 deleterious(0) probably_damaging(0.967) TCGA-DD-A4NO-01 4 70352328 70352330 AAG - UGT2B4 In_Frame_Del p.L363del 0.26 TCGA-DD-A4NO-01 5 140307101 140307101 C T PCDHAC1 Silent p.G208G 0.04 TCGA-DD-A4NO-01 5 180048556 180048556 T C FLT4 Missense_Mutation p.Y669C 0.34 deleterious(0.02) probably_damaging(1) TCGA-DD-A4NO-01 5 26881251 26881251 T G CDH9 Silent p.R788R 0.39 TCGA-DD-A4NO-01 5 54401400 54401400 G A GZMA Missense_Mutation p.A57T 0.47 tolerated(0.29) benign(0.21) TCGA-DD-A4NO-01 5 5461240 5461240 A G KIAA0947 Missense_Mutation p.D598G 0.27 tolerated(0.5) benign(0.002) TCGA-DD-A4NO-01 5 65349290 65349290 C T ERBB2IP Missense_Mutation p.S715L 0.34 tolerated_low_confidence(0.07) benign(0.003) TCGA-DD-A4NO-01 6 157522055 157522055 A G ARID1B Missense_Mutation p.I1443V 0.42 benign(0.01) TCGA-DD-A4NO-01 6 161016508 161016508 G T LPA Missense_Mutation p.T1116N 0.21 deleterious(0) probably_damaging(0.99) TCGA-DD-A4NO-01 6 44228252 44228252 G A NFKBIE Missense_Mutation p.T378I 0.05 deleterious(0.04) possibly_damaging(0.643) TCGA-DD-A4NO-01 7 11446000 11446000 A G THSD7A Silent p.C1388C 0.36 TCGA-DD-A4NO-01 7 137791378 137791378 C A AKR1D1 Missense_Mutation p.Q202K 0.06 deleterious(0) benign(0.326) TCGA-DD-A4NO-01 7 139416619 139416619 G A HIPK2 Missense_Mutation p.P72L 0.21 tolerated(0.31) benign(0.002) TCGA-DD-A4NO-01 8 145106719 145106719 G C OPLAH Missense_Mutation p.P1211A 0.29 tolerated(0.18) benign(0.007) TCGA-DD-A4NO-01 8 66635839 66635840 - T PDE7A Frame_Shift_Ins p.Y394Ifs*14 0.42 TCGA-DD-A4NO-01 8 95680361 95680361 C T ESRP1 Silent p.D372D 0.59 TCGA-DD-A4NO-01 X 15560134 15560134 T A BMX Missense_Mutation p.F475Y 0.76 deleterious(0) possibly_damaging(0.809) TCGA-DD-A4NO-01 X 77528826 77528827 - T CYSLTR1 Frame_Shift_Ins p.A140Sfs*28 0.39 TCGA-DD-A4NO-01 X 89177852 89177852 A T TGIF2LX 3'UTR 0.02 TCGA-DD-A4NP-01 10 115374663 115374663 A T NRAP Missense_Mutation p.Y1041N 0.31 tolerated(0.35) probably_damaging(0.961) TCGA-DD-A4NP-01 10 68686847 68686847 G C LRRTM3 Missense_Mutation p.S58T 0.35 tolerated(0.05) benign(0.001) TCGA-DD-A4NP-01 12 108929239 108929239 T C SART3 Silent p.R484R 0.14 TCGA-DD-A4NP-01 12 123815842 123815842 C T SBNO1 Silent p.T330T 0.38 TCGA-DD-A4NP-01 12 49374348 49374348 G T WNT1 Missense_Mutation p.W167L 0.35 deleterious(0) probably_damaging(1) TCGA-DD-A4NP-01 15 22369299 22369299 T A OR4M2 Missense_Mutation p.C242S 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-DD-A4NP-01 19 39866423 39866423 C T SAMD4B Silent p.H267H 0.08 TCGA-DD-A4NP-01 19 42409130 42409130 T G ARHGEF1 Missense_Mutation p.W746G 0.10 tolerated(0.13) probably_damaging(0.928) TCGA-DD-A4NP-01 19 50794186 50794186 C T MYH14 Missense_Mutation p.R1670C 0.32 deleterious(0) probably_damaging(0.988) TCGA-DD-A4NP-01 1 11838987 11838987 C T C1orf167 Missense_Mutation p.P858L 0.26 tolerated(0.07) possibly_damaging(0.851) TCGA-DD-A4NP-01 1 152188410 152188410 G T HRNR Missense_Mutation p.Q1899K 0.04 unknown(0) TCGA-DD-A4NP-01 1 156255146 156255146 A C TMEM79 Silent p.G43G 0.30 TCGA-DD-A4NP-01 1 202462434 202462434 C A PPP1R12B Missense_Mutation p.L712M 0.37 tolerated(0.13) benign(0.352) TCGA-DD-A4NP-01 1 26881119 26881119 G A RPS6KA1 Missense_Mutation p.E225K 0.33 deleterious(0.03) benign(0.322) TCGA-DD-A4NP-01 20 43588912 43588912 G A TOMM34 Silent p.R21R 0.31 TCGA-DD-A4NP-01 20 43588913 43588913 C A TOMM34 Missense_Mutation p.R21L 0.30 deleterious(0) possibly_damaging(0.792) TCGA-DD-A4NP-01 20 62378320 62378320 G - ZBTB46 Frame_Shift_Del p.P578Qfs*83 0.11 TCGA-DD-A4NP-01 21 14417587 14417587 A T RNU6-614P 5'Flank 0.15 TCGA-DD-A4NP-01 21 46951887 46951887 A G SLC19A1 Missense_Mutation p.M122T 0.12 deleterious(0.01) probably_damaging(0.988) TCGA-DD-A4NP-01 22 30640773 30640773 C T LIF Missense_Mutation p.G57S 0.05 tolerated(1) benign(0.015) TCGA-DD-A4NP-01 3 38791583 38791583 G T SCN10A Silent p.I616I 0.29 TCGA-DD-A4NP-01 4 71690030 71690030 A G GRSF1 3'UTR 0.27 TCGA-DD-A4NP-01 5 112111324 112111324 A G APC Splice_Site p.X141_splice 0.38 TCGA-DD-A4NP-01 5 141007750 141007750 G C HDAC3 Nonsense_Mutation p.Y232* 0.30 TCGA-DD-A4NP-01 5 178541281 178541281 C T ADAMTS2 Missense_Mutation p.V1075I 0.28 deleterious(0.05) benign(0.11) TCGA-DD-A4NP-01 5 462103 462103 G A EXOC3 Missense_Mutation p.E474K 0.28 deleterious(0.02) probably_damaging(0.973) TCGA-DD-A4NP-01 5 55260044 55260049 GACTTC - IL6ST In_Frame_Del p.E195_V196del 0.15 TCGA-DD-A4NP-01 5 74100401 74100401 T C FAM169A Missense_Mutation p.M277V 0.22 tolerated(0.52) benign(0) TCGA-DD-A4NP-01 6 3154966 3154966 C - TUBB2A Frame_Shift_Del p.E157Kfs*8 0.18 TCGA-DD-A4NP-01 6 3225854 3225854 C - TUBB2B Frame_Shift_Del p.E157Kfs*8 0.13 TCGA-DD-A4NP-01 6 57012123 57012123 G A ZNF451 Missense_Mutation p.D414N 0.08 tolerated(0.33) benign(0.025) TCGA-DD-A4NP-01 7 127026146 127026146 C G ZNF800 Missense_Mutation p.G42A 0.22 deleterious(0) probably_damaging(0.995) TCGA-DD-A4NP-01 7 93628605 93628605 A G BET1 Silent p.G7G 0.36 TCGA-DD-A4NP-01 8 38133282 38133282 A T WHSC1L1 Silent p.S1397S 0.30 TCGA-DD-A4NP-01 9 128003101 128003101 G T HSPA5 Missense_Mutation p.P70T 0.27 tolerated_low_confidence(0.16) benign(0.001) TCGA-DD-A4NQ-01 10 60037077 60037077 A T CISD1 Nonsense_Mutation p.K78* 0.15 TCGA-DD-A4NQ-01 10 93558647 93558647 G T TNKS2 Splice_Site p.X67_splice 0.15 TCGA-DD-A4NQ-01 11 123489506 123489506 A T GRAMD1B Missense_Mutation p.E669D 0.16 tolerated(0.45) benign(0.009) TCGA-DD-A4NQ-01 11 124861393 124861393 G A CCDC15 Missense_Mutation p.D649N 0.10 tolerated(0.7) benign(0.009) TCGA-DD-A4NQ-01 11 4661048 4661048 A G OR51D1 Missense_Mutation p.I10V 0.15 tolerated(1) benign(0) TCGA-DD-A4NQ-01 11 4903313 4903313 T A OR51T1 Missense_Mutation p.Y89N 0.19 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NQ-01 11 61564409 61564409 A G FEN1 3'UTR 0.03 TCGA-DD-A4NQ-01 11 63755856 63755856 C A OTUB1 Silent p.R36R 0.15 TCGA-DD-A4NQ-01 11 64820704 64820704 G A NAALADL1 Missense_Mutation p.T395I 0.16 tolerated(0.07) benign(0.229) TCGA-DD-A4NQ-01 11 75509440 75509440 G T DGAT2 Silent p.G326G 0.20 TCGA-DD-A4NQ-01 12 104388181 104388181 G C GLT8D2 Silent p.A233A 0.15 TCGA-DD-A4NQ-01 12 108012091 108012091 G T BTBD11 Missense_Mutation p.R796S 0.14 deleterious(0.01) benign(0.427) TCGA-DD-A4NQ-01 12 49919817 49919817 A G SPATS2 Missense_Mutation p.M473V 0.21 tolerated(0.35) benign(0) TCGA-DD-A4NQ-01 12 50473752 50473752 C T ASIC1 Silent p.G373G 0.17 TCGA-DD-A4NQ-01 12 69250148 69250148 G T CPM 3'UTR 0.20 TCGA-DD-A4NQ-01 12 70206599 70206599 G A RAB3IP Missense_Mutation p.R407K 0.17 deleterious(0.04) benign(0.403) TCGA-DD-A4NQ-01 14 59821978 59821978 C G DAAM1 Missense_Mutation p.Q828E 0.18 tolerated(0.09) probably_damaging(0.968) TCGA-DD-A4NQ-01 14 60631900 60631900 C T DHRS7 Missense_Mutation p.R43H 0.11 tolerated(0.06) benign(0.032) TCGA-DD-A4NQ-01 15 49620847 49620850 TCTC - FAM227B Frame_Shift_Del p.R481Nfs*33 0.13 TCGA-DD-A4NQ-01 16 18853630 18853630 A G SMG1 Silent p.H2122H 0.29 TCGA-DD-A4NQ-01 16 2136306 2136311 TGTACC - TSC2 In_Frame_Del p.Y1593_L1594del 0.20 TCGA-DD-A4NQ-01 16 23646654 23646654 G T PALB2 Missense_Mutation p.P405T 0.19 deleterious(0) probably_damaging(1) TCGA-DD-A4NQ-01 16 57060281 57060281 T A NLRC5 Missense_Mutation p.Y476N 0.21 tolerated(0.12) benign(0.194) TCGA-DD-A4NQ-01 16 84228660 84228660 C G ADAD2 Intron 0.09 TCGA-DD-A4NQ-01 17 54535232 54535232 T C ANKFN1 Silent p.C486C 0.06 TCGA-DD-A4NQ-01 17 7187403 7187403 G T SLC2A4 Missense_Mutation p.A187S 0.17 tolerated(0.85) possibly_damaging(0.79) TCGA-DD-A4NQ-01 17 7576633 7576633 T C TP53 Intron 0.35 TCGA-DD-A4NQ-01 17 76482177 76482177 G T DNAH17 Silent p.I2366I 0.10 TCGA-DD-A4NQ-01 18 19079942 19079942 G A GREB1L Missense_Mutation p.G1215E 0.20 tolerated(0.11) benign(0.075) TCGA-DD-A4NQ-01 19 17943612 17943612 G A JAK3 Missense_Mutation p.S826L 0.17 tolerated(0.06) probably_damaging(0.911) TCGA-DD-A4NQ-01 19 3206308 3206308 C T NCLN Nonsense_Mutation p.Q462* 0.25 TCGA-DD-A4NQ-01 19 39071081 39071081 C T RYR1 Silent p.R4861R 0.17 TCGA-DD-A4NQ-01 19 43990929 43990929 C T PHLDB3 Intron 0.10 TCGA-DD-A4NQ-01 19 4664897 4664897 G T C19orf10 Missense_Mutation p.T93N 0.16 deleterious(0.05) benign(0.399) TCGA-DD-A4NQ-01 19 49841271 49841271 C G CD37 Missense_Mutation p.D144E 0.31 tolerated(0.06) possibly_damaging(0.463) TCGA-DD-A4NQ-01 19 58862780 58862780 G A A1BG Missense_Mutation p.P296L 0.27 deleterious(0) probably_damaging(0.996) TCGA-DD-A4NQ-01 1 114380848 114380848 C T PTPN22 Missense_Mutation p.D392N 0.17 tolerated(0.38) benign(0.03) TCGA-DD-A4NQ-01 1 114505036 114505036 G T HIPK1 Missense_Mutation p.Q693H 0.18 tolerated(0.16) benign(0.274) TCGA-DD-A4NQ-01 1 1277480 1277480 A G DVL1 Missense_Mutation p.M140T 0.18 tolerated(0.16) benign(0.02) TCGA-DD-A4NQ-01 1 152057431 152057433 GAT - TCHHL1 3'UTR 0.20 TCGA-DD-A4NQ-01 1 159504893 159504893 C G OR10J5 Missense_Mutation p.R302T 0.12 deleterious(0.01) probably_damaging(0.938) TCGA-DD-A4NQ-01 1 161697408 161697408 G A FCRLB Missense_Mutation p.A413T 0.06 deleterious_low_confidence(0.05) benign(0.01) TCGA-DD-A4NQ-01 1 17301519 17301519 C G MFAP2 Splice_Site p.X150_splice 0.22 TCGA-DD-A4NQ-01 1 181767462 181767462 C G CACNA1E Missense_Mutation p.S2145C 0.24 deleterious(0) probably_damaging(0.971) TCGA-DD-A4NQ-01 1 211192479 211192479 G C KCNH1 Missense_Mutation p.I226M 0.04 deleterious(0.01) probably_damaging(0.978) TCGA-DD-A4NQ-01 1 226595632 226595632 C A PARP1 5'UTR 0.23 TCGA-DD-A4NQ-01 1 231344856 231344857 - A TRIM67 Frame_Shift_Ins p.N662Kfs*24 0.23 TCGA-DD-A4NQ-01 1 235973623 235973623 G T LYST Silent p.T165T 0.21 TCGA-DD-A4NQ-01 1 237778097 237778097 A C RYR2 Missense_Mutation p.K1890T 0.20 benign(0.003) TCGA-DD-A4NQ-01 1 27941376 27941376 C A FGR Silent p.V360V 0.12 TCGA-DD-A4NQ-01 1 46165836 46165836 C A IPP Missense_Mutation p.M519I 0.16 deleterious(0.01) probably_damaging(0.93) TCGA-DD-A4NQ-01 1 7700465 7700465 C T CAMTA1 Silent p.P172P 0.20 TCGA-DD-A4NQ-01 20 18505223 18505223 G C SEC23B Missense_Mutation p.R171S 0.16 tolerated(0.22) benign(0.028) TCGA-DD-A4NQ-01 20 25261588 25261588 G A PYGB Missense_Mutation p.V415M 0.14 deleterious(0.01) probably_damaging(0.972) TCGA-DD-A4NQ-01 20 34220601 34220601 C A CPNE1 Silent p.R54R 0.08 TCGA-DD-A4NQ-01 20 50287714 50287714 G A ATP9A Missense_Mutation p.R374C 0.07 deleterious(0) probably_damaging(0.995) TCGA-DD-A4NQ-01 20 58322830 58322830 G T PHACTR3 Missense_Mutation p.A100S 0.14 tolerated(1) benign(0.033) TCGA-DD-A4NQ-01 20 61978125 61978125 G A CHRNA4 Missense_Mutation p.L617F 0.17 deleterious(0) probably_damaging(1) TCGA-DD-A4NQ-01 21 30419571 30419571 G T USP16 Missense_Mutation p.R647L 0.15 deleterious(0.04) possibly_damaging(0.664) TCGA-DD-A4NQ-01 21 43896039 43896039 G A RSPH1 Silent p.D282D 0.22 TCGA-DD-A4NQ-01 22 21354333 21354333 G A THAP7 Missense_Mutation p.R256C 0.19 deleterious(0) probably_damaging(0.996) TCGA-DD-A4NQ-01 22 28494971 28494971 T C TTC28 Missense_Mutation p.Y1160C 0.10 tolerated(0.05) benign(0.076) TCGA-DD-A4NQ-01 22 38201683 38201684 - T H1F0 Frame_Shift_Ins p.S45Ffs*18 0.09 TCGA-DD-A4NQ-01 22 43870736 43870736 T A MPPED1 Missense_Mutation p.L176Q 0.18 tolerated(0.08) possibly_damaging(0.865) TCGA-DD-A4NQ-01 2 10095217 10095217 A G GRHL1 Missense_Mutation p.Y65C 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-DD-A4NQ-01 2 107041399 107041399 G A RGPD3 Silent p.Y1008Y 0.11 TCGA-DD-A4NQ-01 2 121554929 121554929 G T GLI2 Missense_Mutation p.E11D 0.21 tolerated_low_confidence(0.22) benign(0.007) TCGA-DD-A4NQ-01 2 160242941 160242941 T A BAZ2B Missense_Mutation p.M1132L 0.17 possibly_damaging(0.681) TCGA-DD-A4NQ-01 2 176988265 176988265 G C HOXD9 Missense_Mutation p.E257Q 0.16 deleterious(0.02) possibly_damaging(0.829) TCGA-DD-A4NQ-01 2 186673299 186673299 C T FSIP2 Silent p.V6511V 0.16 TCGA-DD-A4NQ-01 2 187465066 187465066 T C ITGAV Intron 0.12 TCGA-DD-A4NQ-01 2 223918206 223918206 G C KCNE4 3'UTR 0.20 TCGA-DD-A4NQ-01 2 227906897 227906897 C A COL4A4 Missense_Mutation p.D1158Y 0.14 unknown(0) TCGA-DD-A4NQ-01 2 74745708 74745708 T A DQX1 Silent p.P673P 0.18 TCGA-DD-A4NQ-01 2 90249250 90249250 T C IGKV1D-43 Missense_Mutation p.F69S 0.12 deleterious(0) benign(0.089) TCGA-DD-A4NQ-01 2 97405772 97405772 C T LMAN2L Silent p.A2A 0.25 TCGA-DD-A4NQ-01 3 13612210 13612210 C T FBLN2 Missense_Mutation p.P119S 0.19 deleterious(0.03) probably_damaging(0.987) TCGA-DD-A4NQ-01 3 167272493 167272493 T - WDR49 Frame_Shift_Del p.I249Yfs*80 0.24 TCGA-DD-A4NQ-01 3 52864633 52864633 G A ITIH4 Missense_Mutation p.T9I 0.19 tolerated(0.1) benign(0.015) TCGA-DD-A4NQ-01 3 58849427 58849427 G A C3orf67 Missense_Mutation p.P359S 0.17 deleterious(0) probably_damaging(0.988) TCGA-DD-A4NQ-01 3 97868812 97868812 A T OR5H14 Missense_Mutation p.N195Y 0.27 deleterious(0) possibly_damaging(0.746) TCGA-DD-A4NQ-01 4 122853884 122853884 C T TRPC3 Missense_Mutation p.D177N 0.20 tolerated(0.16) probably_damaging(0.954) TCGA-DD-A4NQ-01 4 152507926 152507926 T C FAM160A1 Missense_Mutation p.L289P 0.11 deleterious(0) probably_damaging(1) TCGA-DD-A4NQ-01 4 166149976 166149976 A T KLHL2 Missense_Mutation p.D61V 0.10 deleterious(0) probably_damaging(1) TCGA-DD-A4NQ-01 4 186446243 186446247 GACTC - PDLIM3 Frame_Shift_Del p.E58Hfs*5 0.14 TCGA-DD-A4NQ-01 4 188924467 188924467 C A ZFP42 Missense_Mutation p.A169E 0.17 deleterious(0) benign(0.441) TCGA-DD-A4NQ-01 4 188924478 188924478 A T ZFP42 Nonsense_Mutation p.R173* 0.18 TCGA-DD-A4NQ-01 4 44682735 44682735 A G GUF1 Missense_Mutation p.N101S 0.21 tolerated(0.2) probably_damaging(0.999) TCGA-DD-A4NQ-01 4 7787959 7787959 C T AFAP1 Missense_Mutation p.A498T 0.19 tolerated(0.19) benign(0.342) TCGA-DD-A4NQ-01 5 140182464 140182464 A G PCDHA3 Missense_Mutation p.N561S 0.11 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-DD-A4NQ-01 5 35704679 35704679 G A SPEF2 Missense_Mutation p.A808T 0.17 tolerated(0.63) benign(0.006) TCGA-DD-A4NQ-01 6 110301831 110301831 A C GPR6 3'UTR 0.17 TCGA-DD-A4NQ-01 6 112035597 112035597 A G FYN Silent p.D99D 0.12 TCGA-DD-A4NQ-01 6 112408474 112408489 AGAAGCAGCAGCCGAT CGAA TUBE1 In_Frame_Del p.I16_W21delinsFG 0.13 TCGA-DD-A4NQ-01 6 112435307 112435307 C G LAMA4 Missense_Mutation p.R1766S 0.15 tolerated(0.07) benign(0.192) TCGA-DD-A4NQ-01 6 169857626 169857626 T A WDR27 3'UTR 0.12 TCGA-DD-A4NQ-01 6 26234479 26234479 G A HIST1H1D 3'UTR 0.16 TCGA-DD-A4NQ-01 6 29580368 29580368 G T GABBR1 Missense_Mutation p.S530R 0.08 deleterious(0.04) possibly_damaging(0.836) TCGA-DD-A4NQ-01 7 143096483 143096483 T A EPHA1 Missense_Mutation p.M287L 0.30 tolerated(0.08) benign(0) TCGA-DD-A4NQ-01 7 143807041 143807041 T A OR2A2 Nonsense_Mutation p.Y122* 0.13 TCGA-DD-A4NQ-01 7 23809272 23809272 C T STK31 Missense_Mutation p.S537F 0.14 deleterious(0.03) possibly_damaging(0.775) TCGA-DD-A4NQ-01 7 24705233 24705233 C T MPP6 Silent p.S270S 0.32 TCGA-DD-A4NQ-01 7 27148273 27148273 T C HOXA3 Missense_Mutation p.Y198C 0.13 deleterious(0) probably_damaging(0.926) TCGA-DD-A4NQ-01 7 2740124 2740124 G A AMZ1 Silent p.G13G 0.21 TCGA-DD-A4NQ-01 7 31683502 31683502 C A CCDC129 Missense_Mutation p.Q866K 0.14 tolerated(0.32) benign(0.012) TCGA-DD-A4NQ-01 7 4285345 4285345 T C SDK1 Missense_Mutation p.S2097P 0.12 deleterious(0) probably_damaging(0.993) TCGA-DD-A4NQ-01 7 91671427 91671427 C T AKAP9 Missense_Mutation p.A1662V 0.31 possibly_damaging(0.904) TCGA-DD-A4NQ-01 8 106813669 106813669 A T ZFPM2 Missense_Mutation p.R453S 0.09 tolerated(0.07) benign(0.075) TCGA-DD-A4NQ-01 8 11420535 11420535 G A BLK Missense_Mutation p.G410R 0.18 deleterious(0) probably_damaging(1) TCGA-DD-A4NQ-01 8 135613836 135613836 C A ZFAT Missense_Mutation p.R709L 0.18 deleterious(0.04) possibly_damaging(0.549) TCGA-DD-A4NQ-01 8 145234383 145234383 T G MROH1 Missense_Mutation p.V65G 0.24 deleterious(0) possibly_damaging(0.52) TCGA-DD-A4NQ-01 8 22273745 22273745 A G SLC39A14 Missense_Mutation p.I367V 0.16 tolerated(0.18) benign(0.371) TCGA-DD-A4NQ-01 8 42911627 42911627 C T FNTA Silent p.A46A 0.26 TCGA-DD-A4NQ-01 8 77767616 77767616 A C ZFHX4 Missense_Mutation p.N2820T 0.25 benign(0.002) TCGA-DD-A4NQ-01 8 92114903 92114903 T C LRRC69 Missense_Mutation p.L5S 0.15 deleterious(0) possibly_damaging(0.632) TCGA-DD-A4NQ-01 9 127232800 127232800 G T GPR144 Silent p.L862L 0.17 TCGA-DD-A4NQ-01 9 131389786 131389786 C T SPTAN1 Intron 0.33 TCGA-DD-A4NQ-01 X 107681209 107681209 A T COL4A6 Missense_Mutation p.L10Q 0.30 unknown(0) TCGA-DD-A4NQ-01 X 38664328 38664328 G C MID1IP1 Silent p.L43L 0.03 TCGA-DD-A4NQ-01 X 53655712 53655712 C T HUWE1 Missense_Mutation p.A369T 0.31 benign(0.285) TCGA-DD-A4NR-01 10 125804199 125804199 C A CHST15 Missense_Mutation p.Q261H 0.08 deleterious(0) probably_damaging(0.995) TCGA-DD-A4NR-01 10 85997395 85997395 A G LRIT1 Missense_Mutation p.I57T 0.14 deleterious(0.01) benign(0.272) TCGA-DD-A4NR-01 11 62782428 62782428 C T SLC22A8 Translation_Start_Site p.M1? 0.24 deleterious(0) probably_damaging(0.985) TCGA-DD-A4NR-01 11 67261260 67261260 G T PITPNM1 Silent p.G1019G 0.16 TCGA-DD-A4NR-01 11 6789560 6789560 G A OR2AG2 Missense_Mutation p.P210L 0.12 deleterious(0.01) benign(0.119) TCGA-DD-A4NR-01 11 77885144 77885144 A C KCTD21 Missense_Mutation p.C153G 0.21 tolerated(0.57) benign(0) TCGA-DD-A4NR-01 11 9597784 9597784 G A WEE1 Missense_Mutation p.G264S 0.14 tolerated(0.12) benign(0.037) TCGA-DD-A4NR-01 12 102076403 102076403 C T MYBPC1 Missense_Mutation p.T1145I 0.22 tolerated_low_confidence(0.22) benign(0.031) TCGA-DD-A4NR-01 12 29598311 29598311 G T OVCH1 Nonsense_Mutation p.Y927* 0.15 TCGA-DD-A4NR-01 12 41966174 41966174 G A PDZRN4 Silent p.K531K 0.23 TCGA-DD-A4NR-01 12 53722106 53722106 G A SP7 Missense_Mutation p.R374C 0.38 deleterious(0) probably_damaging(0.947) TCGA-DD-A4NR-01 12 56733526 56733526 G C IL23A Missense_Mutation p.G105R 0.29 deleterious(0) probably_damaging(0.966) TCGA-DD-A4NR-01 12 6690892 6690892 G A CHD4 Missense_Mutation p.S1535L 0.20 deleterious(0) possibly_damaging(0.587) TCGA-DD-A4NR-01 14 102807765 102807765 T G ZNF839 Missense_Mutation p.L678R 0.18 tolerated(0.06) probably_damaging(0.976) TCGA-DD-A4NR-01 14 65241980 65241980 G A SPTB Silent p.L1569L 0.21 TCGA-DD-A4NR-01 15 41816168 41816168 T C RPAP1 Missense_Mutation p.D746G 0.13 tolerated(0.39) benign(0.001) TCGA-DD-A4NR-01 16 30938694 30938694 G T FBXL19 Missense_Mutation p.E101D 0.05 tolerated(0.13) possibly_damaging(0.585) TCGA-DD-A4NR-01 16 31393346 31393346 G A ITGAX 3'UTR 0.15 TCGA-DD-A4NR-01 16 51173574 51173574 A C SALL1 Silent p.S853S 0.14 TCGA-DD-A4NR-01 16 71682851 71682851 G T PHLPP2 Missense_Mutation p.P1305H 0.20 deleterious_low_confidence(0.01) benign(0.001) TCGA-DD-A4NR-01 16 89574985 89574985 G A SPG7 Missense_Mutation p.E54K 0.14 tolerated_low_confidence(0.53) benign(0.003) TCGA-DD-A4NR-01 17 10395803 10395803 G A MYH1 Missense_Mutation p.A1917V 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-DD-A4NR-01 17 33849543 33849543 G A SLFN12L 5'UTR 0.17 TCGA-DD-A4NR-01 17 39659628 39659628 C G KRT13 Missense_Mutation p.D216H 0.11 deleterious(0) probably_damaging(0.997) TCGA-DD-A4NR-01 17 79100253 79100253 G T AATK Missense_Mutation p.H243Q 0.16 deleterious(0.02) probably_damaging(0.928) TCGA-DD-A4NR-01 18 71749184 71749184 T A FBXO15 Missense_Mutation p.D414V 0.14 deleterious(0) benign(0.312) TCGA-DD-A4NR-01 19 10610300 10610300 A G KEAP1 Missense_Mutation p.I137T 0.08 deleterious(0) possibly_damaging(0.759) TCGA-DD-A4NR-01 19 16545246 16545246 C A EPS15L1 Missense_Mutation p.G143V 0.12 deleterious(0) probably_damaging(0.995) TCGA-DD-A4NR-01 19 23328629 23328629 T A ZNF730 Nonsense_Mutation p.C261* 0.25 TCGA-DD-A4NR-01 19 38713010 38713010 G A DPF1 Silent p.C122C 0.16 TCGA-DD-A4NR-01 1 116948480 116948480 A C ATP1A1 3'Flank 0.12 TCGA-DD-A4NR-01 1 152800128 152800128 C T LCE1A Silent p.C60C 0.17 TCGA-DD-A4NR-01 1 157646381 157646381 C T FCRL3 3'UTR 0.12 TCGA-DD-A4NR-01 1 167849404 167849404 C T ADCY10 Missense_Mutation p.G389R 0.12 deleterious(0) probably_damaging(1) TCGA-DD-A4NR-01 1 171178210 171178210 G T FMO2 3'UTR 0.17 TCGA-DD-A4NR-01 1 176999968 176999968 C T ASTN1 Missense_Mutation p.R329K 0.17 tolerated_low_confidence(0.25) benign(0.218) TCGA-DD-A4NR-01 1 182922155 182922155 G - SHCBP1L Frame_Shift_Del p.T39Pfs*2 0.18 TCGA-DD-A4NR-01 1 210015748 210015748 A G DIEXF Missense_Mutation p.I542V 0.14 tolerated(0.07) benign(0.028) TCGA-DD-A4NR-01 1 27101142 27101142 A C ARID1A Missense_Mutation p.N1475T 0.20 unknown(0) TCGA-DD-A4NR-01 1 3800368 3800368 C G DFFB 3'UTR 0.31 TCGA-DD-A4NR-01 1 6133803 6133803 G A KCNAB2 Silent p.V91V 0.31 TCGA-DD-A4NR-01 1 68954709 68954709 G A DEPDC1 Silent p.G160G 0.14 TCGA-DD-A4NR-01 20 4705195 4705195 G T PRND 5'UTR 0.06 TCGA-DD-A4NR-01 20 61429990 61429990 C A MRGBP Missense_Mutation p.P108T 0.18 deleterious(0.04) probably_damaging(0.998) TCGA-DD-A4NR-01 22 37414605 37414605 A G TST Missense_Mutation p.S57P 0.11 tolerated(0.11) probably_damaging(0.988) TCGA-DD-A4NR-01 2 21229859 21229859 G T APOB Nonsense_Mutation p.S3294* 0.12 TCGA-DD-A4NR-01 2 74482906 74482906 T A SLC4A5 Missense_Mutation p.T341S 0.22 tolerated(0.22) possibly_damaging(0.449) TCGA-DD-A4NR-01 3 151545468 151545468 A G AADAC Silent p.S236S 0.17 TCGA-DD-A4NR-01 3 38519668 38519668 T C ACVR2B Missense_Mutation p.L136P 0.21 tolerated(0.15) possibly_damaging(0.61) TCGA-DD-A4NR-01 3 44673680 44673680 C T ZNF197 Nonsense_Mutation p.Q212* 0.16 TCGA-DD-A4NR-01 3 49044348 49044348 G A P4HTM 3'UTR 0.09 TCGA-DD-A4NR-01 3 64005107 64005107 A T PSMD6 Missense_Mutation p.L121Q 0.20 deleterious(0.01) possibly_damaging(0.616) TCGA-DD-A4NR-01 4 44626734 44626734 G A YIPF7 Silent p.A188A 0.22 TCGA-DD-A4NR-01 4 85540553 85540553 T C CDS1 Silent p.F149F 0.11 TCGA-DD-A4NR-01 5 133997208 133997208 G T SEC24A Missense_Mutation p.S166I 0.13 tolerated(0.08) benign(0.019) TCGA-DD-A4NR-01 5 140792839 140792839 C T PCDHGA10 Missense_Mutation p.R33W 0.21 deleterious_low_confidence(0) benign(0.043) TCGA-DD-A4NR-01 5 154311018 154311018 C T GEMIN5 Missense_Mutation p.G261R 0.29 deleterious(0.04) benign(0.005) TCGA-DD-A4NR-01 6 131924170 131924170 C T MED23 Missense_Mutation p.C644Y 0.18 deleterious(0) probably_damaging(0.998) TCGA-DD-A4NR-01 6 133846297 133846297 G A EYA4 Missense_Mutation p.E582K 0.17 deleterious(0) benign(0.013) TCGA-DD-A4NR-01 6 15452356 15452356 C G JARID2 Missense_Mutation p.S148C 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-DD-A4NR-01 6 45390432 45390432 A C RUNX2 Missense_Mutation p.Q54P 0.12 tolerated_low_confidence(0.31) benign(0.046) TCGA-DD-A4NR-01 7 105121549 105121549 A G PUS7 Silent p.Y375Y 0.18 TCGA-DD-A4NR-01 7 117398014 117398014 C T CTTNBP2 Silent p.P1061P 0.10 TCGA-DD-A4NR-01 7 134143873 134143873 C A AKR1B1 5'UTR 0.17 TCGA-DD-A4NR-01 7 34014331 34014331 G A BMPER Missense_Mutation p.V171M 0.11 tolerated(0.11) benign(0.047) TCGA-DD-A4NR-01 7 47988020 47988020 G T PKD1L1 Silent p.A6A 0.16 TCGA-DD-A4NR-01 8 10782237 10782237 G T XKR6 Missense_Mutation p.L290M 0.24 deleterious(0) probably_damaging(0.995) TCGA-DD-A4NR-01 8 114031312 114031312 A G CSMD3 Silent p.F338F 0.05 TCGA-DD-A4NR-01 8 145753145 145753147 AGA - C8orf82 In_Frame_Del p.F77del 0.31 TCGA-DD-A4NR-01 8 2800063 2800063 G A CSMD1 Missense_Mutation p.A3489V 0.07 probably_damaging(0.961) TCGA-DD-A4NR-01 9 25677591 25677591 G C TUSC1 3'UTR 0.36 TCGA-DD-A4NR-01 X 144337470 144337470 G T SPANXN1 3'UTR 0.20 TCGA-DD-A4NR-01 X 47919574 47919574 T A ZNF630 Missense_Mutation p.E86V 0.17 deleterious(0) benign(0.065) TCGA-DD-A4NR-01 X 49061566 49061566 G C CACNA1F 3'UTR 0.22 TCGA-DD-A4NR-01 X 49853423 49853444 AATGGAACAGCTGGCTTATTAC - CLCN5 Frame_Shift_Del p.M543Tfs*32 0.15 TCGA-DD-A4NR-01 X 66765514 66765516 AGC T AR Frame_Shift_Del p.S176Lfs*4 0.15 TCGA-DD-A4NR-01 X 73960186 73960186 A G KIAA2022 Silent p.N1402N 0.17 TCGA-DD-A4NS-01 10 101823465 101823465 G T CPN1 Silent p.S259S 0.12 TCGA-DD-A4NS-01 10 126150438 126150438 C T LHPP Missense_Mutation p.P3S 0.07 tolerated_low_confidence(0.66) benign(0) TCGA-DD-A4NS-01 10 74970149 74970149 G C FAM149B1 Missense_Mutation p.S284T 0.06 deleterious(0.01) benign(0.054) TCGA-DD-A4NS-01 11 104912234 104912234 G A CARD16 Missense_Mutation p.R163W 0.10 deleterious_low_confidence(0) benign(0.031) TCGA-DD-A4NS-01 11 1080902 1080902 T A MUC2 Missense_Mutation p.L429Q 0.07 probably_damaging(0.999) TCGA-DD-A4NS-01 11 4869689 4869689 G T OR51S1 Silent p.A250A 0.10 TCGA-DD-A4NS-01 11 64111617 64111617 C T CCDC88B Missense_Mutation p.P535L 0.05 tolerated_low_confidence(0.68) benign(0.002) TCGA-DD-A4NS-01 12 118198839 118198839 G A KSR2 Silent p.R321R 0.07 TCGA-DD-A4NS-01 12 1949905 1949905 C T CACNA2D4 Missense_Mutation p.A851T 0.25 deleterious(0.01) benign(0.051) TCGA-DD-A4NS-01 12 53007536 53007536 C T KRT73 Missense_Mutation p.R307H 0.05 tolerated(0.06) benign(0.243) TCGA-DD-A4NS-01 12 57442030 57442030 C A MYO1A Missense_Mutation p.K26N 0.07 tolerated(0.5) benign(0.052) TCGA-DD-A4NS-01 12 8693519 8693519 T C CLEC4E 5'UTR 0.15 TCGA-DD-A4NS-01 13 36747876 36747876 C A SOHLH2 Missense_Mutation p.G395V 0.07 tolerated_low_confidence(1) benign(0) TCGA-DD-A4NS-01 13 39264479 39264479 C G FREM2 Missense_Mutation p.P1000A 0.08 tolerated(0.06) benign(0.004) TCGA-DD-A4NS-01 13 61985253 61985253 C A PCDH20 3'UTR 0.06 TCGA-DD-A4NS-01 14 53098899 53098899 G A GPR137C Missense_Mutation p.V247I 0.08 tolerated(0.54) benign(0.022) TCGA-DD-A4NS-01 15 51868294 51868294 T C DMXL2 Missense_Mutation p.I58V 0.08 tolerated(0.18) probably_damaging(0.992) TCGA-DD-A4NS-01 15 52342240 52342240 T G MAPK6 Silent p.L202L 0.06 TCGA-DD-A4NS-01 15 89866679 89866679 C A POLG Missense_Mutation p.D741Y 0.04 deleterious(0) probably_damaging(0.997) TCGA-DD-A4NS-01 16 31439091 31439091 G A COX6A2 3'UTR 0.07 TCGA-DD-A4NS-01 17 29592318 29592318 C A NF1 Missense_Mutation p.S1599Y 0.06 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NS-01 17 29657493 29657494 - TT NF1 Frame_Shift_Ins p.I1931Lfs*12 0.08 TCGA-DD-A4NS-01 17 32614839 32614839 T A CCL11 3'UTR 0.25 TCGA-DD-A4NS-01 17 35580444 35580444 C T ACACA Missense_Mutation p.A1185T 0.05 deleterious(0) benign(0.423) TCGA-DD-A4NS-01 17 40689487 40689487 G A NAGLU Missense_Mutation p.R152Q 0.12 tolerated(0.41) benign(0.037) TCGA-DD-A4NS-01 18 33767531 33767531 G T MOCOS Missense_Mutation p.R10L 0.12 tolerated_low_confidence(0.28) benign(0.002) TCGA-DD-A4NS-01 19 14208612 14208612 C T PRKACA Silent p.P170P 0.09 TCGA-DD-A4NS-01 19 21216304 21216304 G T ZNF430 Nonsense_Mutation p.E47* 0.11 TCGA-DD-A4NS-01 19 50472930 50472930 C T SIGLEC16 RNA 0.17 TCGA-DD-A4NS-01 19 56042689 56042689 G T SBK2 Missense_Mutation p.L93I 0.14 deleterious(0.01) possibly_damaging(0.908) TCGA-DD-A4NS-01 19 7615936 7615936 G A PNPLA6 Silent p.T718T 0.12 TCGA-DD-A4NS-01 1 205797737 205797737 G A PM20D1 3'UTR 0.16 TCGA-DD-A4NS-01 1 207934716 207934716 T - CD46 Frame_Shift_Del p.S201Hfs*32 0.12 TCGA-DD-A4NS-01 1 22838185 22838185 A C ZBTB40 Missense_Mutation p.E673D 0.08 tolerated(0.19) unknown(0) TCGA-DD-A4NS-01 1 233394746 233394746 C G PCNXL2 Missense_Mutation p.V288L 0.15 tolerated_low_confidence(0.86) benign(0) TCGA-DD-A4NS-01 1 247655366 247655366 G T OR2W5 RNA 0.07 TCGA-DD-A4NS-01 1 38227457 38227457 G A EPHA10 Missense_Mutation p.A157V 0.12 deleterious(0) probably_damaging(0.997) TCGA-DD-A4NS-01 1 42629210 42629210 C A GUCA2A Missense_Mutation p.R49S 0.05 tolerated(0.35) benign(0.079) TCGA-DD-A4NS-01 1 44684852 44684852 G A DMAP1 Missense_Mutation p.R282Q 0.07 tolerated(0.18) possibly_damaging(0.459) TCGA-DD-A4NS-01 20 34116559 34116559 G A C20orf173 Silent p.N153N 0.17 TCGA-DD-A4NS-01 20 54958068 54958068 C T AURKA Missense_Mutation p.R180K 0.07 deleterious(0) probably_damaging(0.957) TCGA-DD-A4NS-01 21 33077755 33077755 A T SCAF4 Missense_Mutation p.V47E 0.07 probably_damaging(0.999) TCGA-DD-A4NS-01 21 35791666 35791666 A G AP000322.53 Silent p.S90S 0.10 TCGA-DD-A4NS-01 22 18301464 18301464 G A MICAL3 Silent p.S1321S 0.07 TCGA-DD-A4NS-01 22 19838629 19838629 C A C22orf29 3'UTR 0.15 TCGA-DD-A4NS-01 22 36587462 36587462 G A APOL4 Silent p.A238A 0.06 TCGA-DD-A4NS-01 22 39222683 39222683 G T NPTXR Missense_Mutation p.A307D 0.14 deleterious(0) probably_damaging(0.913) TCGA-DD-A4NS-01 22 39746105 39746105 C A SYNGR1 Silent p.V30V 0.10 TCGA-DD-A4NS-01 2 136872511 136872511 G A CXCR4 Silent p.L333L 0.10 TCGA-DD-A4NS-01 2 160310259 160310259 T G BAZ2B Missense_Mutation p.S67R 0.08 benign(0.307) TCGA-DD-A4NS-01 2 165947139 165947139 C G SCN3A Missense_Mutation p.V1842L 0.08 deleterious(0) probably_damaging(0.974) TCGA-DD-A4NS-01 2 179584040 179584040 A G TTN Missense_Mutation p.V8026A 0.08 TCGA-DD-A4NS-01 2 179997118 179997118 T C SESTD1 Silent p.Q295Q 0.05 TCGA-DD-A4NS-01 2 87073896 87073896 C T CD8B Missense_Mutation p.G165D 0.08 deleterious(0.03) possibly_damaging(0.664) TCGA-DD-A4NS-01 3 10916662 10916662 C T SLC6A11 Missense_Mutation p.A258V 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-DD-A4NS-01 3 42738590 42738590 C T HHATL Missense_Mutation p.V305I 0.05 deleterious(0.02) benign(0.396) TCGA-DD-A4NS-01 3 57488148 57488148 G T DNAH12 Missense_Mutation p.T382K 0.08 deleterious(0) benign(0.187) TCGA-DD-A4NS-01 3 8809008 8809008 G A OXTR Missense_Mutation p.T289M 0.08 deleterious(0.01) probably_damaging(0.916) TCGA-DD-A4NS-01 4 164393857 164393857 C A TKTL2 Missense_Mutation p.G344C 0.07 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NS-01 4 184366140 184366140 G T CDKN2AIP Nonsense_Mutation p.E64* 0.11 TCGA-DD-A4NS-01 4 2306022 2306022 C T ZFYVE28 Missense_Mutation p.G682D 0.16 tolerated(0.31) benign(0.008) TCGA-DD-A4NS-01 5 10250304 10250304 C A CCT5 5'UTR 0.24 TCGA-DD-A4NS-01 5 140799054 140799054 G T PCDHGB7 Missense_Mutation p.S543I 0.09 deleterious(0) possibly_damaging(0.703) TCGA-DD-A4NS-01 5 150275398 150275398 G T ZNF300 Missense_Mutation p.T484N 0.06 tolerated(0.17) benign(0.161) TCGA-DD-A4NS-01 5 179780211 179780211 C T GFPT2 Missense_Mutation p.G3R 0.13 deleterious(0) probably_damaging(1) TCGA-DD-A4NS-01 5 41904516 41904516 G A C5orf51 Missense_Mutation p.G16E 0.08 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-DD-A4NS-01 5 76359344 76359344 C T AGGF1 3'UTR 0.56 TCGA-DD-A4NS-01 6 19838427 19838427 G A ID4 Splice_Site p.X147_splice 0.09 TCGA-DD-A4NS-01 6 34003577 34003577 A G GRM4 Silent p.Y770Y 0.06 TCGA-DD-A4NS-01 6 46726569 46726569 C T ANKRD66 Missense_Mutation p.L223F 0.20 tolerated(0.07) benign(0.18) TCGA-DD-A4NS-01 7 122774465 122774465 T A SLC13A1 Missense_Mutation p.N311Y 0.06 deleterious(0) probably_damaging(0.951) TCGA-DD-A4NS-01 7 138768681 138768681 T C ZC3HAV1 Missense_Mutation p.N181S 0.05 deleterious(0.04) possibly_damaging(0.899) TCGA-DD-A4NS-01 7 149520825 149520825 C T SSPO RNA 0.09 TCGA-DD-A4NS-01 8 142444018 142444018 C T PTP4A3 3'Flank 0.12 TCGA-DD-A4NS-01 8 146033060 146033060 C T ZNF517 Silent p.R253R 0.14 TCGA-DD-A4NS-01 9 113192621 113192621 C A SVEP1 Missense_Mutation p.L1821F 0.07 probably_damaging(0.999) TCGA-DD-A4NS-01 9 21334572 21334572 T G KLHL9 Missense_Mutation p.H96P 0.07 deleterious(0.03) probably_damaging(0.986) TCGA-DD-A4NS-01 X 107335011 107335011 C G ATG4A 5'UTR 0.07 TCGA-DD-A4NS-01 X 118250523 118250523 A G KIAA1210 Missense_Mutation p.S196P 0.08 tolerated(0.09) benign(0.316) TCGA-DD-A4NS-01 X 122536848 122536848 C A GRIA3 Missense_Mutation p.Q362K 0.06 tolerated(0.13) benign(0.042) TCGA-DD-A4NS-01 X 135767837 135767837 T C ARHGEF6 Missense_Mutation p.E464G 0.08 deleterious(0.01) benign(0.037) TCGA-DD-A4NS-01 X 86772799 86772799 G A KLHL4 5'Flank 0.12 TCGA-DD-A4NS-01 X 86772813 86772813 T G KLHL4 5'Flank 0.12 TCGA-DD-A4NS-01 X 92965898 92965898 C A FAM133A 3'UTR 0.04 TCGA-DD-A4NV-01 10 114912183 114912183 C A TCF7L2 Missense_Mutation p.S418Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NV-01 10 11505005 11505005 T G USP6NL Missense_Mutation p.N658T 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.575) TCGA-DD-A4NV-01 10 28378706 28378706 T C MPP7 Silent p.E339E 0.11 TCGA-DD-A4NV-01 10 43598063 43598063 A G RET Missense_Mutation p.Y204C 0.16 deleterious(0) probably_damaging(0.995) TCGA-DD-A4NV-01 10 50669432 50669432 G A ERCC6 Missense_Mutation p.H1317Y 0.27 tolerated(0.08) benign(0.081) TCGA-DD-A4NV-01 10 63850753 63850753 A T ARID5B Nonsense_Mutation p.R511* 0.10 TCGA-DD-A4NV-01 10 98762480 98762480 C T SLIT1 Missense_Mutation p.G1379S 0.23 tolerated(0.07) benign(0.004) TCGA-DD-A4NV-01 10 98945408 98945408 C T SLIT1 Silent p.G8G 0.16 TCGA-DD-A4NV-01 11 102826222 102826222 G A MMP13 Missense_Mutation p.R41C 0.26 deleterious(0) possibly_damaging(0.51) TCGA-DD-A4NV-01 11 103060527 103060527 G C DYNC2H1 Missense_Mutation p.M2473I 0.13 benign(0.106) TCGA-DD-A4NV-01 11 103229042 103229042 T C DYNC2H1 Silent p.S4044S 0.06 TCGA-DD-A4NV-01 11 107463045 107463045 A C AP000889.3 Splice_Site p.X82_splice 0.19 TCGA-DD-A4NV-01 11 108114704 108114704 T G ATM Missense_Mutation p.L174R 0.24 deleterious(0) probably_damaging(0.977) TCGA-DD-A4NV-01 11 118869172 118869172 T G CCDC84 Silent p.A51A 0.14 TCGA-DD-A4NV-01 11 17801139 17801139 C T KCNC1 Silent p.F547F 0.05 TCGA-DD-A4NV-01 11 55587564 55587564 A T OR5D18 Silent p.G153G 0.20 TCGA-DD-A4NV-01 11 56113645 56113645 C A OR8K1 Missense_Mutation p.T44K 0.20 deleterious_low_confidence(0) possibly_damaging(0.72) TCGA-DD-A4NV-01 11 70332701 70332701 C T SHANK2 Missense_Mutation p.G1234R 0.19 tolerated(0.4) probably_damaging(0.953) TCGA-DD-A4NV-01 12 125834659 125834659 G T TMEM132B Missense_Mutation p.W238C 0.14 tolerated(0.15) probably_damaging(0.946) TCGA-DD-A4NV-01 12 125834660 125834660 G T TMEM132B Nonsense_Mutation p.E239* 0.14 TCGA-DD-A4NV-01 12 19282708 19282708 G A PLEKHA5 5'UTR 0.36 TCGA-DD-A4NV-01 12 26572000 26572000 T G ITPR2 Missense_Mutation p.E2364D 0.06 tolerated(0.2) benign(0.304) TCGA-DD-A4NV-01 12 49521596 49521596 G A TUBA1B 3'UTR 0.15 TCGA-DD-A4NV-01 12 51442826 51442826 G T LETMD1 Missense_Mutation p.K44N 0.29 tolerated_low_confidence(0.08) benign(0.003) TCGA-DD-A4NV-01 12 57619424 57619424 T C NXPH4 Missense_Mutation p.F274S 0.35 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NV-01 12 58174205 58174205 G T METTL21B Missense_Mutation p.V153L 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-DD-A4NV-01 12 7125774 7125774 C G LPCAT3 5'UTR 0.26 TCGA-DD-A4NV-01 13 102345029 102345029 C A ITGBL1 Missense_Mutation p.D370E 0.29 tolerated(0.1) benign(0.142) TCGA-DD-A4NV-01 13 110436226 110436226 G A IRS2 Silent p.G725G 0.22 TCGA-DD-A4NV-01 13 25914356 25914356 G A NUPL1 3'UTR 0.19 TCGA-DD-A4NV-01 13 52542657 52542657 G C ATP7B Missense_Mutation p.Q544E 0.09 tolerated(0.86) benign(0.038) TCGA-DD-A4NV-01 14 20248815 20248815 A G OR4M1 Missense_Mutation p.M112V 0.12 tolerated(0.5) benign(0.009) TCGA-DD-A4NV-01 14 77705090 77705090 A T TMEM63C Missense_Mutation p.E235D 0.21 tolerated(0.09) benign(0.005) TCGA-DD-A4NV-01 15 44094165 44094165 A G HYPK 3'UTR 0.31 TCGA-DD-A4NV-01 15 50999894 50999894 T C SPPL2A 3'UTR 0.13 TCGA-DD-A4NV-01 15 52356857 52356857 A G MAPK6 Missense_Mutation p.Q609R 0.06 deleterious_low_confidence(0.02) benign(0.115) TCGA-DD-A4NV-01 15 62146685 62146685 T G VPS13C Silent p.R3745R 0.27 TCGA-DD-A4NV-01 15 86273887 86273887 A G AKAP13 Missense_Mutation p.T2415A 0.19 tolerated(0.07) benign(0.155) TCGA-DD-A4NV-01 15 89443027 89443027 A T MFGE8 Missense_Mutation p.S296T 0.22 tolerated(0.66) benign(0) TCGA-DD-A4NV-01 15 91347543 91347543 C A BLM Silent p.V1235V 0.22 TCGA-DD-A4NV-01 15 91448631 91448631 A G MAN2A2 Missense_Mutation p.N95D 0.08 tolerated(0.15) probably_damaging(0.978) TCGA-DD-A4NV-01 16 15727524 15727524 C T KIAA0430 Missense_Mutation p.D395N 0.11 deleterious(0) possibly_damaging(0.839) TCGA-DD-A4NV-01 16 30080632 30080632 C T ALDOA Silent p.G236G 0.32 TCGA-DD-A4NV-01 16 31500328 31500328 G A SLC5A2 Missense_Mutation p.V470I 0.09 tolerated(0.18) benign(0.037) TCGA-DD-A4NV-01 16 4606653 4606653 A G C16orf96 Missense_Mutation p.T55A 0.21 tolerated(0.27) possibly_damaging(0.48) TCGA-DD-A4NV-01 16 75565414 75565414 G A CHST5 5'UTR 0.17 TCGA-DD-A4NV-01 16 88502140 88502140 G A ZNF469 Silent p.G2726G 0.27 TCGA-DD-A4NV-01 16 89258218 89258218 C T CDH15 Missense_Mutation p.P511S 0.19 tolerated(0.31) benign(0.443) TCGA-DD-A4NV-01 17 17150199 17150199 A T COPS3 3'UTR 0.41 TCGA-DD-A4NV-01 17 17991304 17991304 C T DRG2 5'UTR 0.16 TCGA-DD-A4NV-01 17 2200545 2200545 G A SMG6 Missense_Mutation p.R715C 0.23 deleterious(0) possibly_damaging(0.766) TCGA-DD-A4NV-01 17 293163 293163 C T FAM101B Missense_Mutation p.R76H 0.30 deleterious(0.05) benign(0.397) TCGA-DD-A4NV-01 17 30469471 30469476 CCGCCG - AC090616.2 In_Frame_Del p.R88_R89del 0.33 TCGA-DD-A4NV-01 17 46196421 46196421 T A SNX11 Missense_Mutation p.C138S 0.14 deleterious(0) probably_damaging(0.971) TCGA-DD-A4NV-01 17 56423671 56423671 A T SUPT4H1 Missense_Mutation p.I97N 0.25 deleterious(0) possibly_damaging(0.475) TCGA-DD-A4NV-01 17 66252013 66252013 A G AMZ2 Missense_Mutation p.Y308C 0.23 deleterious(0.01) benign(0.078) TCGA-DD-A4NV-01 17 79428710 79428710 G A RP11-1055B8.7 Missense_Mutation p.D2341N 0.23 possibly_damaging(0.892) TCGA-DD-A4NV-01 17 80039092 80039092 T C FASN Silent p.Q2181Q 0.20 TCGA-DD-A4NV-01 17 80050583 80050583 G A FASN Missense_Mutation p.T295I 0.30 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NV-01 18 14105460 14105460 C T ZNF519 Missense_Mutation p.G360E 0.10 tolerated(0.22) benign(0.029) TCGA-DD-A4NV-01 18 60243849 60243849 T A ZCCHC2 3'UTR 0.35 TCGA-DD-A4NV-01 19 1796715 1796715 C T ATP8B3 Missense_Mutation p.R583H 0.21 deleterious(0.05) benign(0.004) TCGA-DD-A4NV-01 19 36831783 36831783 C T ZFP14 Silent p.K315K 0.23 TCGA-DD-A4NV-01 19 43529163 43529163 A G PSG11 Missense_Mutation p.M37T 0.22 tolerated(1) benign(0.001) TCGA-DD-A4NV-01 19 45260419 45260419 G A BCL3 Missense_Mutation p.R222Q 0.11 tolerated(0.27) benign(0.001) TCGA-DD-A4NV-01 19 48945414 48945414 C T GRIN2D Silent p.I816I 0.21 TCGA-DD-A4NV-01 19 49448217 49448217 T C DHDH 3'UTR 0.06 TCGA-DD-A4NV-01 19 50958840 50958840 T C MYBPC2 Silent p.P759P 0.12 TCGA-DD-A4NV-01 19 8651245 8651245 G C ADAMTS10 Missense_Mutation p.S838W 0.27 deleterious(0) probably_damaging(0.989) TCGA-DD-A4NV-01 1 10068317 10068317 A C RBP7 Silent p.G113G 0.11 TCGA-DD-A4NV-01 1 103444965 103444965 T A COL11A1 Silent p.P861P 0.03 TCGA-DD-A4NV-01 1 113192072 113192072 C G CAPZA1 Missense_Mutation p.L46V 0.26 deleterious(0) possibly_damaging(0.618) TCGA-DD-A4NV-01 1 1152909 1152909 C T SDF4 Missense_Mutation p.V358M 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-DD-A4NV-01 1 149915759 149915759 G A OTUD7B Silent p.F843F 0.10 TCGA-DD-A4NV-01 1 150939260 150939260 T C CERS2 Missense_Mutation p.I274V 0.06 tolerated(0.8) benign(0.004) TCGA-DD-A4NV-01 1 156237933 156237933 A G SMG5 Missense_Mutation p.L294P 0.08 deleterious(0) probably_damaging(1) TCGA-DD-A4NV-01 1 167095928 167095928 G T DUSP27 Missense_Mutation p.E520D 0.31 tolerated(0.05) benign(0.223) TCGA-DD-A4NV-01 1 173446509 173446509 C T PRDX6 5'UTR 0.17 TCGA-DD-A4NV-01 1 175052888 175052888 C G TNN Missense_Mutation p.L351V 0.36 tolerated(0.49) benign(0.005) TCGA-DD-A4NV-01 1 180953892 180953892 G C STX6 Missense_Mutation p.F204L 0.07 tolerated(0.1) benign(0.143) TCGA-DD-A4NV-01 1 201351392 201351392 C T LAD1 Silent p.S512S 0.06 TCGA-DD-A4NV-01 1 203678582 203678582 G C ATP2B4 Missense_Mutation p.V571L 0.14 deleterious(0.05) benign(0.253) TCGA-DD-A4NV-01 1 209796790 209796790 T C LAMB3 Intron 0.19 TCGA-DD-A4NV-01 1 210415764 210415764 T C SERTAD4 3'UTR 0.07 TCGA-DD-A4NV-01 1 218475635 218475635 G A RRP15 Splice_Site p.X47_splice 0.10 TCGA-DD-A4NV-01 1 62914231 62914231 T C USP1 Missense_Mutation p.C506R 0.12 deleterious(0) probably_damaging(1) TCGA-DD-A4NV-01 20 1456917 1456917 T C SIRPB2 Silent p.L308L 0.05 TCGA-DD-A4NV-01 20 2842263 2842263 G T VPS16 Missense_Mutation p.C271F 0.27 deleterious(0) probably_damaging(0.991) TCGA-DD-A4NV-01 20 2842264 2842264 C T VPS16 Silent p.C271C 0.30 TCGA-DD-A4NV-01 20 2842265 2842265 A T VPS16 Missense_Mutation p.S272C 0.25 tolerated(0.14) benign(0.004) TCGA-DD-A4NV-01 20 43837360 43837360 A G SEMG1 3'UTR 0.07 TCGA-DD-A4NV-01 20 58520369 58520369 T A FAM217B 3'UTR 0.17 TCGA-DD-A4NV-01 21 41459179 41459179 T A DSCAM Missense_Mutation p.T1296S 0.15 tolerated(0.06) possibly_damaging(0.51) TCGA-DD-A4NV-01 21 41684133 41684133 T C DSCAM Missense_Mutation p.D646G 0.26 tolerated(0.05) probably_damaging(0.911) TCGA-DD-A4NV-01 21 46011616 46011616 G T KRTAP10-6 Nonsense_Mutation p.C250* 0.05 TCGA-DD-A4NV-01 22 32007130 32007130 C T SFI1 Silent p.G752G 0.22 TCGA-DD-A4NV-01 22 40366916 40366916 G A GRAP2 Missense_Mutation p.R274Q 0.26 tolerated(0.35) benign(0.318) TCGA-DD-A4NV-01 2 152293757 152293757 C T RIF1 Missense_Mutation p.P459S 0.24 deleterious(0) possibly_damaging(0.842) TCGA-DD-A4NV-01 2 15492192 15492192 C T NBAS Missense_Mutation p.R1368K 0.22 tolerated(1) benign(0.004) TCGA-DD-A4NV-01 2 1653324 1653324 G A PXDN Missense_Mutation p.T743M 0.07 deleterious(0) probably_damaging(0.937) TCGA-DD-A4NV-01 2 180348008 180348008 C A ZNF385B Missense_Mutation p.D221Y 0.28 deleterious(0) possibly_damaging(0.656) TCGA-DD-A4NV-01 2 196599744 196599744 T G SLC39A10 Missense_Mutation p.I825M 0.09 deleterious(0) probably_damaging(0.996) TCGA-DD-A4NV-01 2 197008292 197008292 T C STK17B Missense_Mutation p.E200G 0.08 deleterious(0) probably_damaging(0.999) TCGA-DD-A4NV-01 2 216226796 216226796 G A FN1 Missense_Mutation p.R2420C 0.07 deleterious(0) probably_damaging(0.91) TCGA-DD-A4NV-01 2 218924535 218924535 C A CXCR2P1 RNA 0.07 TCGA-DD-A4NV-01 2 224866553 224866553 A G SERPINE2 Missense_Mutation p.F34S 0.11 tolerated(0.22) benign(0.071) TCGA-DD-A4NV-01 2 232079712 232079712 C T ARMC9 Missense_Mutation p.P116S 0.26 tolerated(0.24) benign(0.049) TCGA-DD-A4NV-01 2 65331882 65331882 G T RAB1A Missense_Mutation p.L28I 0.25 deleterious(0.02) probably_damaging(0.989) TCGA-DD-A4NV-01 2 80529902 80529902 G T LRRTM1 Missense_Mutation p.A348E 0.23 tolerated(0.05) possibly_damaging(0.601) TCGA-DD-A4NV-01 2 98382611 98382611 C G TMEM131 Missense_Mutation p.E1563D 0.04 deleterious_low_confidence(0) possibly_damaging(0.675) TCGA-DD-A4NV-01 3 10347279 10347279 G A SEC13 Missense_Mutation p.A183V 0.15 tolerated(1) benign(0.014) TCGA-DD-A4NV-01 3 113513944 113513952 ATATCCAGC - ATP6V1A In_Frame_Del p.P375_Y377del 0.15 TCGA-DD-A4NV-01 3 132175649 132175649 G T DNAJC13 Missense_Mutation p.G441V 0.18 deleterious(0) probably_damaging(1) TCGA-DD-A4NV-01 3 132277774 132277774 A C ACAD11 3'UTR 0.18 TCGA-DD-A4NV-01 3 179096495 179096495 G A MFN1 Missense_Mutation p.D519N 0.14 tolerated(0.2) benign(0.047) TCGA-DD-A4NV-01 3 19574931 19574931 G A KCNH8 Missense_Mutation p.M888I 0.06 deleterious(0.04) benign(0.018) TCGA-DD-A4NV-01 3 196744154 196744154 C T MFI2 Silent p.T240T 0.26 TCGA-DD-A4NV-01 3 45077344 45077344 G A CLEC3B Silent p.A179A 0.16 TCGA-DD-A4NV-01 3 49316327 49316327 A G USP4 Missense_Mutation p.Y885H 0.07 deleterious(0.01) possibly_damaging(0.584) TCGA-DD-A4NV-01 3 88040336 88040336 T A HTR1F Missense_Mutation p.I146K 0.06 deleterious(0.01) benign(0.143) TCGA-DD-A4NV-01 3 93611955 93611955 T C PROS1 Missense_Mutation p.E326G 0.21 deleterious(0) possibly_damaging(0.603) TCGA-DD-A4NV-01 3 97367321 97367321 T A EPHA6 Intron 0.17 TCGA-DD-A4NV-01 4 1107222 1107222 A T RNF212 Missense_Mutation p.F11I 0.29 deleterious(0.03) probably_damaging(0.967) TCGA-DD-A4NV-01 4 110723189 110723189 T C CFI 5'UTR 0.22 TCGA-DD-A4NV-01 4 114279036 114279036 C G ANK2 Missense_Mutation p.P3088A 0.24 probably_damaging(0.999) TCGA-DD-A4NV-01 4 141313515 141313531 TGTATCTTTATGTTTTT - CLGN Frame_Shift_Del p.K498Rfs*3 0.29 TCGA-DD-A4NV-01 4 146076604 146076604 T C OTUD4 Missense_Mutation p.I213V 0.03 tolerated(0.11) probably_damaging(0.96) TCGA-DD-A4NV-01 4 185606652 185606652 G T PRIMPOL Nonsense_Mutation p.G396* 0.32 TCGA-DD-A4NV-01 4 57889912 57889912 C T POLR2B Nonsense_Mutation p.Q951* 0.10 TCGA-DD-A4NV-01 5 102886634 102886634 G A NUDT12 Silent p.F439F 0.20 TCGA-DD-A4NV-01 5 122110769 122110775 CAGCTCG - SNX2 5'UTR 0.13 TCGA-DD-A4NV-01 5 1245974 1245974 C G SLC6A18 Silent p.P556P 0.20 TCGA-DD-A4NV-01 5 129520172 129520172 T A CHSY3 Missense_Mutation p.L446Q 0.04 deleterious(0) probably_damaging(0.998) TCGA-DD-A4NV-01 5 141244054 141244054 C G PCDH1 Silent p.L614L 0.13 TCGA-DD-A4NV-01 5 149003635 149003635 C T ARHGEF37 Missense_Mutation p.R466W 0.06 deleterious(0) possibly_damaging(0.462) TCGA-DD-A4NV-01 5 149631366 149631366 A G CAMK2A Missense_Mutation p.W214R 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DD-A4NV-01 5 150947398 150947398 A T FAT2 Silent p.A365A 0.19 TCGA-DD-A4NV-01 5 167625964 167625964 G A TENM2 Missense_Mutation p.A1003T 0.19 tolerated(0.11) possibly_damaging(0.592) TCGA-DD-A4NV-01 5 177577899 177577899 G A NHP2 Missense_Mutation p.P109L 0.21 deleterious(0) probably_damaging(0.997) TCGA-DD-A4NV-01 5 180276368 180276368 A C ZFP62 Silent p.A709A 0.08 TCGA-DD-A4NV-01 5 54586093 54586096 TTGT - DHX29 Frame_Shift_Del p.N286Sfs*11 0.17 TCGA-DD-A4NV-01 5 68800058 68800058 A G OCLN 5'UTR 0.07 TCGA-DD-A4NV-01 5 76932919 76932919 C A OTP Silent p.L58L 0.17 TCGA-DD-A4NV-01 5 79733274 79733274 A G ZFYVE16 Missense_Mutation p.H257R 0.07 deleterious(0.04) benign(0.009) TCGA-DD-A4NV-01 5 81474399 81474399 C T ATG10 Missense_Mutation p.T149M 0.07 deleterious(0) probably_damaging(0.995) TCGA-DD-A4NV-01 6 109308697 109308697 A C SESN1 3'UTR 0.12 TCGA-DD-A4NV-01 6 10995354 10995354 T G ELOVL2 Missense_Mutation p.I131L 0.29 tolerated(0.18) benign(0.14) TCGA-DD-A4NV-01 6 112671285 112671285 T A RFPL4B Missense_Mutation p.D125E 0.10 deleterious(0.02) benign(0.014) TCGA-DD-A4NV-01 6 155458347 155458347 A T TIAM2 Missense_Mutation p.S411C 0.08 deleterious(0.01) benign(0.114) TCGA-DD-A4NV-01 6 24718827 24718828 - T C6orf62 Frame_Shift_Ins p.E24Rfs*5 0.11 TCGA-DD-A4NV-01 6 25917287 25917287 T C SLC17A2 Silent p.L226L 0.07 TCGA-DD-A4NV-01 6 27791909 27791909 G A HIST1H4J Missense_Mutation p.G3S 0.24 deleterious_low_confidence(0.05) unknown(0) TCGA-DD-A4NV-01 6 32134918 32134918 C A EGFL8 Missense_Mutation p.T162K 0.23 deleterious(0) possibly_damaging(0.803) TCGA-DD-A4NV-01 6 35255576 35255576 G T ZNF76 Missense_Mutation p.G129V 0.24 tolerated(0.08) benign(0.069) TCGA-DD-A4NV-01 6 50791246 50791246 T G TFAP2B Missense_Mutation p.F70V 0.26 deleterious(0) benign(0.162) TCGA-DD-A4NV-01 7 100086033 100086033 G C NYAP1 Missense_Mutation p.S230T 0.19 tolerated(0.31) benign(0.099) TCGA-DD-A4NV-01 7 1024648 1024648 C T CYP2W1 Missense_Mutation p.H134Y 0.15 deleterious(0) possibly_damaging(0.904) TCGA-DD-A4NV-01 7 128520499 128520499 A T KCP RNA 0.09 TCGA-DD-A4NV-01 7 135303347 135303347 A C NUP205 Missense_Mutation p.D1320A 0.14 tolerated(0.51) benign(0.309) TCGA-DD-A4NV-01 7 142460310 142460310 G A PRSS1 Silent p.L161L 0.04 TCGA-DD-A4NV-01 7 148949877 148949877 G A ZNF212 Missense_Mutation p.A208T 0.08 tolerated(0.47) benign(0.003) TCGA-DD-A4NV-01 7 150935740 150935740 T A CHPF2 Missense_Mutation p.F764L 0.08 deleterious(0.01) benign(0.338) TCGA-DD-A4NV-01 7 153750014 153750014 G A DPP6 Missense_Mutation p.G37S 0.25 tolerated_low_confidence(0.33) benign(0.002) TCGA-DD-A4NV-01 7 36336619 36336619 A G EEPD1 Missense_Mutation p.I445V 0.13 tolerated(0.85) benign(0.005) TCGA-DD-A4NV-01 7 47342556 47342556 G A TNS3 Missense_Mutation p.P1150L 0.17 deleterious(0.05) benign(0.167) TCGA-DD-A4NV-01 7 72742269 72742269 C T FKBP6 5'Flank 0.06 TCGA-DD-A4NV-01 7 72985569 72985569 C A TBL2 Missense_Mutation p.K276N 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-DD-A4NV-01 7 82764470 82764470 G C PCLO Missense_Mutation p.S799C 0.06 unknown(0) TCGA-DD-A4NV-01 7 83643565 83643565 G T SEMA3A Missense_Mutation p.S257Y 0.12 tolerated(0.05) benign(0.32) TCGA-DD-A4NV-01 7 86824435 86824435 A T DMTF1 Missense_Mutation p.E754D 0.18 tolerated_low_confidence(0.11) benign(0.018) TCGA-DD-A4NV-01 7 88964910 88964910 C A ZNF804B Missense_Mutation p.Q872K 0.13 tolerated(0.83) benign(0.004) TCGA-DD-A4NV-01 7 92027849 92027849 A G ANKIB1 Silent p.S952S 0.12 TCGA-DD-A4NV-01 7 98580989 98580989 G A TRRAP Missense_Mutation p.V2970M 0.20 probably_damaging(0.979) TCGA-DD-A4NV-01 8 101271389 101271389 C A RNF19A Missense_Mutation p.D638Y 0.11 deleterious_low_confidence(0) possibly_damaging(0.629) TCGA-DD-A4NV-01 8 113519059 113519059 C A CSMD3 Splice_Site p.X1586_splice 0.07 TCGA-DD-A4NV-01 8 120430376 120430376 A G NOV Missense_Mutation p.Q130R 0.28 deleterious(0.03) benign(0.033) TCGA-DD-A4NV-01 8 142176419 142176419 C A DENND3 Missense_Mutation p.P482T 0.38 tolerated(0.21) benign(0.022) TCGA-DD-A4NV-01 8 145113709 145113709 C T OPLAH Missense_Mutation p.R185H 0.29 deleterious(0.02) benign(0.011) TCGA-DD-A4NV-01 8 36666269 36666269 A C KCNU1 Silent p.I230I 0.13 TCGA-DD-A4NV-01 8 56015167 56015167 C A XKR4 Nonsense_Mutation p.S40* 0.26 TCGA-DD-A4NV-01 9 107457351 107457351 C T OR13D1 Silent p.L217L 0.23 TCGA-DD-A4NV-01 9 116085393 116085393 G A WDR31 Missense_Mutation p.R123C 0.05 deleterious(0) probably_damaging(1) TCGA-DD-A4NV-01 9 131151593 131151593 G T URM1 Missense_Mutation p.S81I 0.16 deleterious(0) benign(0.361) TCGA-DD-A4NV-01 9 135763682 135763682 C G C9orf9 Missense_Mutation p.P118R 0.20 deleterious(0.01) benign(0.272) TCGA-DD-A4NV-01 9 74863351 74863351 C T GDA Intron 0.11 TCGA-DD-A4NV-01 9 95526969 95526969 C T BICD2 Missense_Mutation p.E20K 0.10 tolerated(0.16) benign(0.311) TCGA-DD-A4NV-01 X 103080021 103080022 GC - RAB9B 3'UTR 0.11 TCGA-DD-A4NV-01 X 125685427 125685427 C T DCAF12L1 Missense_Mutation p.A389T 0.08 tolerated(0.43) benign(0.004) TCGA-DD-A4NV-01 X 142717871 142717871 G T SLITRK4 Missense_Mutation p.P352T 0.36 tolerated(0.85) benign(0.335) TCGA-DD-A4NV-01 X 153133461 153133461 A G L1CAM Missense_Mutation p.L607S 0.18 tolerated(0.19) possibly_damaging(0.673) TCGA-DD-A4NV-01 X 154158630 154158630 T C F8 Silent p.P1145P 0.14 TCGA-DD-A4NV-01 X 41203644 41203644 C T DDX3X Silent p.D339D 0.04 TCGA-DD-A4NV-01 X 82763684 82763684 C T POU3F4 Missense_Mutation p.P118S 0.05 tolerated(0.41) benign(0.002) TCGA-DD-A73A-01 10 133946888 133946888 G T JAKMIP3 Missense_Mutation p.A236S 0.25 tolerated(0.13) benign(0.341) TCGA-DD-A73A-01 10 45799015 45799015 C T OR13A1 Missense_Mutation p.A286T 0.07 tolerated(0.68) benign(0.003) TCGA-DD-A73A-01 10 55568592 55568592 A G PCDH15 Missense_Mutation p.S674P 0.27 tolerated_low_confidence(0.07) unknown(0) TCGA-DD-A73A-01 10 70661161 70661161 G T DDX50 Missense_Mutation p.W7C 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.893) TCGA-DD-A73A-01 11 59416963 59416963 A C PATL1 Missense_Mutation p.L569V 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-DD-A73A-01 11 74862203 74862203 A C SLCO2B1 5'UTR 0.36 TCGA-DD-A73A-01 11 8732433 8732433 C G ST5 Missense_Mutation p.E771Q 0.30 deleterious(0.01) probably_damaging(0.963) TCGA-DD-A73A-01 12 111744860 111744860 G A CUX2 Missense_Mutation p.A332T 0.07 tolerated(0.09) probably_damaging(0.959) TCGA-DD-A73A-01 12 117698357 117698357 C G NOS1 Silent p.A760A 0.32 TCGA-DD-A73A-01 12 27066960 27066960 T G ASUN Missense_Mutation p.K507N 0.26 deleterious(0) possibly_damaging(0.517) TCGA-DD-A73A-01 12 39299407 39299407 C G CPNE8 5'UTR 0.43 TCGA-DD-A73A-01 12 45803160 45803160 G A ANO6 Missense_Mutation p.G655E 0.30 tolerated(0.96) benign(0.41) TCGA-DD-A73A-01 12 53875041 53875041 T A MAP3K12 Silent p.S868S 0.45 TCGA-DD-A73A-01 12 54575679 54575679 G A SMUG1 3'UTR 0.25 TCGA-DD-A73A-01 12 57660557 57660557 A T R3HDM2 Silent p.S682S 0.27 TCGA-DD-A73A-01 12 6145595 6145601 CTCCTTG - VWF Frame_Shift_Del p.K834Mfs*7 0.23 TCGA-DD-A73A-01 12 70732260 70732260 A G CNOT2 Missense_Mutation p.D313G 0.30 tolerated(0.27) benign(0.42) TCGA-DD-A73A-01 13 25467000 25467000 T C CENPJ Silent p.L999L 0.34 TCGA-DD-A73A-01 13 25826056 25826056 A T MTMR6 Silent p.P471P 0.32 TCGA-DD-A73A-01 14 100758804 100758804 C T SLC25A29 Missense_Mutation p.G243D 0.28 deleterious(0) probably_damaging(0.999) TCGA-DD-A73A-01 14 103852295 103852295 T A MARK3 5'UTR 0.30 TCGA-DD-A73A-01 14 23897069 23897069 C T MYH7 Missense_Mutation p.C538Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-DD-A73A-01 14 24567763 24567763 C T PCK2 Silent p.D180D 0.29 TCGA-DD-A73A-01 15 40564637 40564637 C T PAK6 Silent p.A357A 0.07 TCGA-DD-A73A-01 15 44671957 44671957 G T CASC4 Missense_Mutation p.G291V 0.36 tolerated(0.29) possibly_damaging(0.506) TCGA-DD-A73A-01 15 92459624 92459624 G T SLCO3A1 Silent p.V194V 0.35 TCGA-DD-A73A-01 15 99459327 99459327 G A IGF1R Missense_Mutation p.G655S 0.30 tolerated(1) benign(0.001) TCGA-DD-A73A-01 16 24816121 24816121 C A TNRC6A Silent p.A1311A 0.29 TCGA-DD-A73A-01 16 64984770 64984770 G A CDH11 Silent p.N598N 0.35 TCGA-DD-A73A-01 16 69973254 69973254 A G WWP2 Silent p.G817G 0.32 TCGA-DD-A73A-01 16 77859321 77859321 G A VAT1L Missense_Mutation p.G181E 0.32 deleterious(0) probably_damaging(0.979) TCGA-DD-A73A-01 16 87788816 87788816 C A KLHDC4 Missense_Mutation p.R118M 0.36 deleterious(0.02) probably_damaging(0.984) TCGA-DD-A73A-01 17 11881942 11881942 A C ZNF18 Missense_Mutation p.F328V 0.27 tolerated(0.09) benign(0.049) TCGA-DD-A73A-01 17 18025025 18025025 G T MYO15A Missense_Mutation p.V971L 0.37 unknown(0) TCGA-DD-A73A-01 17 33459359 33459359 G C NLE1 3'UTR 0.51 TCGA-DD-A73A-01 17 33679758 33679758 C A SLFN11 Nonsense_Mutation p.G775* 0.24 TCGA-DD-A73A-01 17 34416065 34416065 C T CCL3 Missense_Mutation p.E78K 0.28 deleterious(0.03) benign(0.03) TCGA-DD-A73A-01 17 43319449 43319449 G A FMNL1 Silent p.P607P 0.13 TCGA-DD-A73A-01 17 4443170 4443170 G T MYBBP1A Missense_Mutation p.P1176Q 0.08 deleterious(0) probably_damaging(1) TCGA-DD-A73A-01 17 47284155 47284155 A G GNGT2 Silent p.N58N 0.36 TCGA-DD-A73A-01 17 71199899 71199899 C T COG1 Silent p.A783A 0.34 TCGA-DD-A73A-01 17 76160409 76160409 A G C17orf99 Missense_Mutation p.N202D 0.31 tolerated(0.21) benign(0.008) TCGA-DD-A73A-01 19 15918464 15918464 G T OR10H1 Missense_Mutation p.H128Q 0.36 tolerated(0.15) benign(0.017) TCGA-DD-A73A-01 19 17835870 17835870 C G MAP1S Missense_Mutation p.L106V 0.33 tolerated(0.39) probably_damaging(0.99) TCGA-DD-A73A-01 19 33110252 33110252 A G ANKRD27 Missense_Mutation p.S641P 0.26 tolerated(0.15) benign(0.307) TCGA-DD-A73A-01 19 38380424 38380424 G T WDR87 Missense_Mutation p.S1257Y 0.37 probably_damaging(0.998) TCGA-DD-A73A-01 19 42343252 42343252 A T LYPD4 Intron 0.33 TCGA-DD-A73A-01 19 46032587 46032587 G T OPA3 Missense_Mutation p.F90L 0.25 deleterious(0) probably_damaging(0.99) TCGA-DD-A73A-01 19 56104771 56104771 G A FIZ1 Missense_Mutation p.A179V 0.50 tolerated(0.52) unknown(0) TCGA-DD-A73A-01 19 58319697 58319697 A G ZNF552 Missense_Mutation p.I312T 0.33 tolerated(0.11) benign(0.111) TCGA-DD-A73A-01 1 110086824 110086824 T C GPR61 Missense_Mutation p.S394P 0.29 tolerated(0.3) benign(0.001) TCGA-DD-A73A-01 1 13001335 13001335 C T PRAMEF6 Nonsense_Mutation p.W116* 0.08 TCGA-DD-A73A-01 1 183184629 183184629 T A LAMC2 Missense_Mutation p.C104S 0.53 deleterious(0) probably_damaging(0.933) TCGA-DD-A73A-01 1 184787922 184787922 C A FAM129A Missense_Mutation p.E341D 0.52 tolerated(0.06) benign(0.398) TCGA-DD-A73A-01 1 211840446 211840446 A T NEK2 Splice_Site p.X371_splice 0.28 TCGA-DD-A73A-01 1 22310306 22310306 G T CELA3B Missense_Mutation p.G161V 0.32 deleterious(0) probably_damaging(1) TCGA-DD-A73A-01 1 244849969 244849969 G A DESI2 Missense_Mutation p.R38K 0.30 tolerated(1) benign(0.101) TCGA-DD-A73A-01 1 248112914 248112914 C T OR2L8 Missense_Mutation p.A252V 0.27 tolerated(0.3) benign(0.081) TCGA-DD-A73A-01 1 31468064 31468064 G A PUM1 Missense_Mutation p.P242S 0.35 tolerated(0.13) benign(0.05) TCGA-DD-A73A-01 1 35852656 35852656 A G ZMYM4 Missense_Mutation p.Q630R 0.35 tolerated(0.09) benign(0.119) TCGA-DD-A73A-01 1 39500237 39500237 C T NDUFS5 3'UTR 0.37 TCGA-DD-A73A-01 1 99771859 99771859 G - LPPR4 Frame_Shift_Del p.S530Pfs*15 0.23 TCGA-DD-A73A-01 20 58449053 58449053 G A SYCP2 Missense_Mutation p.S1138L 0.28 deleterious(0) probably_damaging(0.983) TCGA-DD-A73A-01 20 60989559 60989559 G A RBBP8NL Missense_Mutation p.S283F 0.28 deleterious(0.01) probably_damaging(0.944) TCGA-DD-A73A-01 21 10906953 10906954 AA T TPTE Frame_Shift_Del p.L536Hfs*6 0.13 TCGA-DD-A73A-01 21 11049587 11049587 G A BAGE2 RNA 0.05 TCGA-DD-A73A-01 21 30411352 30411352 A G USP16 Silent p.P246P 0.29 TCGA-DD-A73A-01 2 135206375 135206375 A T MGAT5 Missense_Mutation p.D728V 0.26 deleterious(0) probably_damaging(0.989) TCGA-DD-A73A-01 2 189856233 189856233 C T COL3A1 Silent p.G291G 0.29 TCGA-DD-A73A-01 2 201399894 201399894 G C SGOL2 Missense_Mutation p.L103F 0.21 deleterious(0) probably_damaging(1) TCGA-DD-A73A-01 2 219499332 219499332 A C PLCD4 Missense_Mutation p.K625N 0.33 tolerated(0.14) benign(0.357) TCGA-DD-A73A-01 2 242194526 242194526 G C HDLBP Missense_Mutation p.H376Q 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-DD-A73A-01 2 43801892 43801893 - AA THADA Frame_Shift_Ins p.V438Lfs*4 0.25 TCGA-DD-A73A-01 2 9574031 9574031 A G CPSF3 Missense_Mutation p.E184G 0.29 deleterious(0) probably_damaging(0.93) TCGA-DD-A73A-01 3 124449404 124449404 A C UMPS Missense_Mutation p.K29T 0.37 deleterious(0) possibly_damaging(0.887) TCGA-DD-A73A-01 3 130368056 130368056 C A COL6A6 Missense_Mutation p.P1795T 0.35 deleterious(0) possibly_damaging(0.773) TCGA-DD-A73A-01 3 135825091 135825091 T A PPP2R3A Missense_Mutation p.W1086R 0.22 deleterious(0) probably_damaging(0.997) TCGA-DD-A73A-01 3 185234879 185234879 T A LIPH Missense_Mutation p.T320S 0.25 deleterious(0) probably_damaging(1) TCGA-DD-A73A-01 3 41274910 41274910 A T CTNNB1 Missense_Mutation p.N387I 0.31 deleterious(0) probably_damaging(0.998) TCGA-DD-A73A-01 3 42781149 42781149 C T CCDC13 Missense_Mutation p.D381N 0.37 tolerated(0.12) probably_damaging(1) TCGA-DD-A73A-01 3 51969471 51969471 C T RRP9 Silent p.V286V 0.39 TCGA-DD-A73A-01 3 56468631 56468631 G T ERC2 Silent p.V135V 0.34 TCGA-DD-A73A-01 3 58419520 58419520 C T PDHB Missense_Mutation p.G6D 0.21 tolerated_low_confidence(0.21) benign(0.02) TCGA-DD-A73A-01 4 123097024 123097040 ATTTTTCGGTGGTGGAA - KIAA1109 Frame_Shift_Del p.I105Nfs*3 0.16 TCGA-DD-A73A-01 4 134072769 134072769 G C PCDH10 Missense_Mutation p.E492Q 0.05 tolerated(0.65) benign(0.009) TCGA-DD-A73A-01 4 147561765 147561765 G A POU4F2 Silent p.K345K 0.36 TCGA-DD-A73A-01 4 155507454 155507455 - CAG FGA In_Frame_Ins p.S375_E376insA 0.24 TCGA-DD-A73A-01 4 175897952 175897952 C T ADAM29 Silent p.L426L 0.37 TCGA-DD-A73A-01 4 20525746 20525746 C T SLIT2 Missense_Mutation p.R462C 0.33 deleterious(0) probably_damaging(0.998) TCGA-DD-A73A-01 4 79238582 79238583 - C FRAS1 Frame_Shift_Ins p.K630Qfs*19 0.33 TCGA-DD-A73A-01 4 83626515 83626515 C T SCD5 Missense_Mutation p.R95H 0.29 deleterious(0) probably_damaging(0.993) TCGA-DD-A73A-01 4 90856220 90856220 T C MMRN1 Silent p.I463I 0.36 TCGA-DD-A73A-01 4 99393577 99393577 T C TSPAN5 3'UTR 0.38 TCGA-DD-A73A-01 5 102360991 102360991 T A PAM Missense_Mutation p.L881Q 0.27 deleterious(0) probably_damaging(0.996) TCGA-DD-A73A-01 5 109124644 109124644 T G MAN2A1 Missense_Mutation p.H590Q 0.03 tolerated(0.31) benign(0.024) TCGA-DD-A73A-01 5 140574371 140574371 A T PCDHB10 Missense_Mutation p.Q749L 0.20 deleterious_low_confidence(0) possibly_damaging(0.903) TCGA-DD-A73A-01 5 140811741 140811741 T A PCDHGA12 Missense_Mutation p.V472D 0.46 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-DD-A73A-01 5 150886868 150886868 C A FAT2 Missense_Mutation p.A4122S 0.18 benign(0.003) TCGA-DD-A73A-01 5 154173763 154173763 C G LARP1 Missense_Mutation p.S314R 0.25 tolerated(0.06) benign(0.079) TCGA-DD-A73A-01 5 3600047 3600047 G A IRX1 Missense_Mutation p.A329T 0.39 tolerated(0.15) benign(0.133) TCGA-DD-A73A-01 5 37008169 37008169 T C NIPBL Silent p.C1433C 0.33 TCGA-DD-A73A-01 5 40854556 40854556 A C CARD6 3'UTR 0.36 TCGA-DD-A73A-01 5 71493190 71493190 C T MAP1B Silent p.Y1336Y 0.32 TCGA-DD-A73A-01 5 79026634 79026634 C T CMYA5 Silent p.D682D 0.04 TCGA-DD-A73A-01 5 80626218 80626218 A C ACOT12 Missense_Mutation p.F555V 0.54 deleterious_low_confidence(0.01) benign(0.049) TCGA-DD-A73A-01 5 89924641 89924641 C A GPR98 Missense_Mutation p.P501T 0.29 possibly_damaging(0.908) TCGA-DD-A73A-01 6 134494621 134494621 G A SGK1 Silent p.I199I 0.22 TCGA-DD-A73A-01 6 149916182 149916182 C G KATNA1 Missense_Mutation p.G489A 0.24 deleterious(0) probably_damaging(1) TCGA-DD-A73A-01 6 162206857 162206857 T C PARK2 Missense_Mutation p.N273S 0.29 tolerated(0.09) probably_damaging(0.967) TCGA-DD-A73A-01 6 33254618 33254618 A T WDR46 Missense_Mutation p.C357S 0.37 deleterious(0.03) possibly_damaging(0.539) TCGA-DD-A73A-01 6 84910598 84910598 A T KIAA1009 Silent p.S248S 0.35 TCGA-DD-A73A-01 7 55225380 55225380 C G EGFR Missense_Mutation p.P411R 0.35 deleterious(0) probably_damaging(1) TCGA-DD-A73A-01 8 101163580 101163580 A G POLR2K 5'UTR 0.56 TCGA-DD-A73A-01 8 103663550 103663550 T C KLF10 Missense_Mutation p.N337S 0.16 tolerated(0.36) benign(0.009) TCGA-DD-A73A-01 8 116632123 116632123 T G TRPS1 Missense_Mutation p.N68H 0.60 deleterious_low_confidence(0.01) benign(0.002) TCGA-DD-A73A-01 8 143996179 143996179 C A CYP11B2 Missense_Mutation p.W247C 0.23 deleterious(0) probably_damaging(0.996) TCGA-DD-A73A-01 8 143996180 143996180 C A CYP11B2 Missense_Mutation p.W247L 0.24 tolerated(0.25) possibly_damaging(0.533) TCGA-DD-A73A-01 8 21842213 21842213 A T XPO7 Missense_Mutation p.Q445L 0.53 deleterious(0.05) benign(0.068) TCGA-DD-A73A-01 8 62593583 62593583 A G ASPH Missense_Mutation p.I89T 0.30 tolerated_low_confidence(0.17) benign(0.062) TCGA-DD-A73A-01 8 74917085 74917085 G T LY96 Missense_Mutation p.R56I 0.32 deleterious(0.01) benign(0.004) TCGA-DD-A73A-01 8 99961205 99961205 C T OSR2 Missense_Mutation p.P9S 0.20 deleterious_low_confidence(0) benign(0.004) TCGA-DD-A73A-01 9 136308523 136308523 G A ADAMTS13 Missense_Mutation p.C754Y 0.31 deleterious(0) probably_damaging(0.968) TCGA-DD-A73A-01 9 138903604 138903604 C A NACC2 Missense_Mutation p.A508S 0.39 tolerated_low_confidence(0.1) benign(0.008) TCGA-DD-A73A-01 9 396809 396809 C G DOCK8 Missense_Mutation p.H999D 0.40 tolerated(0.23) benign(0.001) TCGA-DD-A73A-01 9 71629038 71629039 - GCGGCGGCG PRKACG 5'UTR 0.19 TCGA-DD-A73A-01 X 11783626 11783626 C A MSL3 Missense_Mutation p.P317T 0.77 deleterious(0.01) probably_damaging(0.99) TCGA-DD-A73A-01 X 14876077 14876077 C T FANCB Splice_Site p.X369_splice 0.72 TCGA-DD-A73A-01 X 5810976 5810976 G A NLGN4X Missense_Mutation p.T778I 0.53 deleterious_low_confidence(0) benign(0.276) TCGA-DD-A73B-01 10 106128178 106128178 C A CCDC147 Intron 0.45 TCGA-DD-A73B-01 10 114168208 114168208 C G ACSL5 Missense_Mutation p.T210R 0.44 deleterious(0.01) possibly_damaging(0.857) TCGA-DD-A73B-01 10 118969678 118969678 C G KCNK18 Silent p.S341S 0.43 TCGA-DD-A73B-01 10 120354363 120354363 C T PRLHR Missense_Mutation p.G132S 0.45 tolerated(0.36) benign(0.001) TCGA-DD-A73B-01 10 72015152 72015152 G A NPFFR1 Missense_Mutation p.P285L 0.50 deleterious(0) probably_damaging(1) TCGA-DD-A73B-01 11 14902228 14902228 T G CYP2R1 Missense_Mutation p.K152Q 0.43 deleterious(0) benign(0.385) TCGA-DD-A73B-01 11 4592676 4592676 T C C11orf40 Missense_Mutation p.N211D 0.22 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-DD-A73B-01 11 4790712 4790712 T C OR51F1 Missense_Mutation p.M146V 0.42 tolerated(0.11) benign(0.013) TCGA-DD-A73B-01 11 49230071 49230071 C T FOLH1 5'UTR 0.40 TCGA-DD-A73B-01 11 55861688 55861688 G A OR8I2 Missense_Mutation p.R302K 0.46 tolerated(0.41) benign(0.003) TCGA-DD-A73B-01 11 57003228 57003228 T C APLNR 3'UTR 0.38 TCGA-DD-A73B-01 11 60882526 60882526 A G CD5 Splice_Site p.X19_splice 0.59 TCGA-DD-A73B-01 11 65359477 65359477 G T EHBP1L1 Missense_Mutation p.R1463L 0.49 deleterious(0) probably_damaging(0.988) TCGA-DD-A73B-01 11 67046702 67046702 C A ADRBK1 Missense_Mutation p.N74K 0.39 tolerated(0.1) benign(0.03) TCGA-DD-A73B-01 11 94318670 94318670 C A PIWIL4 Missense_Mutation p.P232Q 0.80 deleterious(0.04) benign(0.015) TCGA-DD-A73B-01 12 105151023 105151023 C A CHST11 Nonsense_Mutation p.Y167* 0.44 TCGA-DD-A73B-01 12 46246151 46246151 T G ARID2 Missense_Mutation p.I1415M 0.41 tolerated_low_confidence(0.32) benign(0.068) TCGA-DD-A73B-01 12 54118936 54118936 C A CALCOCO1 Nonsense_Mutation p.E31* 0.42 TCGA-DD-A73B-01 12 6342629 6342629 T G CD9 Missense_Mutation p.W109G 0.49 deleterious(0) probably_damaging(1) TCGA-DD-A73B-01 12 6926465 6926465 G C CD4 Silent p.S375S 0.09 TCGA-DD-A73B-01 13 109793226 109793226 G A MYO16 Missense_Mutation p.G1534R 0.27 deleterious_low_confidence(0) possibly_damaging(0.634) TCGA-DD-A73B-01 13 77656079 77656079 T C MYCBP2 Missense_Mutation p.S3658G 0.45 probably_damaging(0.942) TCGA-DD-A73B-01 14 35742836 35742836 G T KIAA0391 3'UTR 0.56 TCGA-DD-A73B-01 14 65398946 65398946 T C CHURC1 Nonstop_Mutation p.*141Qext*20 0.23 TCGA-DD-A73B-01 15 48056407 48056407 T A SEMA6D Missense_Mutation p.D334E 0.81 tolerated(0.68) benign(0.142) TCGA-DD-A73B-01 15 89400397 89400397 G A ACAN Silent p.R1527R 0.90 TCGA-DD-A73B-01 16 23717746 23717746 G A ERN2 Missense_Mutation p.T213M 0.06 tolerated(0.15) benign(0.25) TCGA-DD-A73B-01 16 30569410 30569410 C A ZNF764 Missense_Mutation p.A32S 0.50 deleterious(0.03) probably_damaging(1) TCGA-DD-A73B-01 17 42083959 42083959 C T NAGS Silent p.S326S 0.45 TCGA-DD-A73B-01 17 48156884 48156884 T C ITGA3 Missense_Mutation p.L890P 0.42 deleterious(0.03) probably_damaging(0.997) TCGA-DD-A73B-01 17 65040955 65040955 G A CACNG1 Missense_Mutation p.R60H 0.31 tolerated(0.19) possibly_damaging(0.751) TCGA-DD-A73B-01 17 74075584 74075584 C A ZACN Missense_Mutation p.N54K 0.48 tolerated(0.53) benign(0.007) TCGA-DD-A73B-01 17 78968447 78968447 G T CHMP6 Nonsense_Mutation p.E44* 0.43 TCGA-DD-A73B-01 17 80045029 80045029 C T FASN Silent p.E1108E 0.47 TCGA-DD-A73B-01 18 2909794 2909794 G T EMILIN2 Missense_Mutation p.G934V 0.38 deleterious(0) probably_damaging(1) TCGA-DD-A73B-01 19 17291744 17291744 A T MYO9B Missense_Mutation p.H743L 0.38 tolerated(0.08) possibly_damaging(0.759) TCGA-DD-A73B-01 19 2217014 2217014 G T DOT1L Missense_Mutation p.M823I 0.43 tolerated_low_confidence(1) possibly_damaging(0.758) TCGA-DD-A73B-01 19 34890537 34890537 G T GPI Splice_Site p.X503_splice 0.37 TCGA-DD-A73B-01 19 35992755 35992755 G A DMKN Intron 0.26 TCGA-DD-A73B-01 19 43371844 43371844 A T PSG1 3'UTR 0.44 TCGA-DD-A73B-01 19 44471018 44471018 G A ZNF221 Missense_Mutation p.C455Y 0.56 deleterious(0) probably_damaging(1) TCGA-DD-A73B-01 19 58928202 58928202 A G ZNF584 Missense_Mutation p.E106G 0.50 tolerated(0.17) benign(0.012) TCGA-DD-A73B-01 19 6714382 6714382 C T C3 Missense_Mutation p.D194N 0.56 tolerated(1) benign(0.002) TCGA-DD-A73B-01 1 120839624 120839624 G A FAM72B 5'UTR 0.09 TCGA-DD-A73B-01 1 146400238 146400238 A C NBPF12 Silent p.S238S 0.91 TCGA-DD-A73B-01 1 151143906 151143906 T C TMOD4 Intron 0.55 TCGA-DD-A73B-01 1 158225121 158225121 C A CD1A Silent p.A102A 0.06 TCGA-DD-A73B-01 1 161475295 161475295 C T FCGR2A Missense_Mutation p.P13L 0.38 tolerated(0.05) benign(0.354) TCGA-DD-A73B-01 1 161595991 161595991 C T FCGR3B Missense_Mutation p.G210E 0.54 deleterious(0) probably_damaging(0.999) TCGA-DD-A73B-01 1 203683382 203683382 A C ATP2B4 Missense_Mutation p.K795Q 0.45 deleterious(0) probably_damaging(1) TCGA-DD-A73B-01 1 235915327 235915327 A G LYST Silent p.N2535N 0.56 TCGA-DD-A73B-01 1 50666911 50666911 G A ELAVL4 3'UTR 0.16 TCGA-DD-A73B-01 20 16387061 16387061 A G KIF16B Silent p.F551F 0.51 TCGA-DD-A73B-01 20 33703635 33703635 G C EDEM2 Missense_Mutation p.F446L 0.41 tolerated(0.36) probably_damaging(0.941) TCGA-DD-A73B-01 20 34541998 34541998 G A SCAND1 Missense_Mutation p.A70V 0.39 tolerated(0.08) benign(0.014) TCGA-DD-A73B-01 20 62076074 62076074 G A KCNQ2 Missense_Mutation p.R210C 0.43 deleterious(0) probably_damaging(0.988) TCGA-DD-A73B-01 21 40887102 40887102 G A SH3BGR 3'UTR 0.41 TCGA-DD-A73B-01 22 32352465 32352465 A C YWHAH Missense_Mutation p.K143Q 0.78 deleterious_low_confidence(0) benign(0.048) TCGA-DD-A73B-01 2 109380985 109380985 T C RANBP2 Silent p.D1330D 0.93 TCGA-DD-A73B-01 2 166897863 166897863 C A SCN1A Missense_Mutation p.V765L 0.81 deleterious(0) probably_damaging(0.998) TCGA-DD-A73B-01 2 219688557 219688557 G A PRKAG3 Silent p.G466G 0.55 TCGA-DD-A73B-01 2 242075390 242075390 T C PASK Missense_Mutation p.Q401R 0.84 tolerated(0.18) benign(0.015) TCGA-DD-A73B-01 2 32503205 32503205 C G YIPF4 5'UTR 0.21 TCGA-DD-A73B-01 2 39278406 39278406 C T SOS1 Missense_Mutation p.R248H 0.92 deleterious(0.01) possibly_damaging(0.804) TCGA-DD-A73B-01 2 73676478 73676478 G A ALMS1 Missense_Mutation p.A941T 0.36 benign(0.006) TCGA-DD-A73B-01 2 75276831 75276831 G T TACR1 Missense_Mutation p.H318N 0.56 tolerated(0.2) benign(0.38) TCGA-DD-A73B-01 2 84518059 84518059 A - FUNDC2P2 RNA 0.21 TCGA-DD-A73B-01 3 130718491 130718491 C G ATP2C1 Missense_Mutation p.L907V 0.07 deleterious(0.01) probably_damaging(0.976) TCGA-DD-A73B-01 3 187447680 187447680 G A BCL6 Silent p.S171S 0.94 TCGA-DD-A73B-01 3 44906567 44906567 G A TMEM42 Silent p.Q125Q 0.49 TCGA-DD-A73B-01 3 45718605 45718605 G T LIMD1 3'UTR 0.48 TCGA-DD-A73B-01 3 46399400 46399400 A G CCR2 Missense_Mutation p.I128V 0.46 tolerated(0.05) benign(0.122) TCGA-DD-A73B-01 3 49395602 49395602 C T GPX1 Missense_Mutation p.G37D 0.44 tolerated(0.12) possibly_damaging(0.451) TCGA-DD-A73B-01 4 158256937 158256937 T A GRIA2 Missense_Mutation p.Y461N 0.87 deleterious(0) probably_damaging(0.953) TCGA-DD-A73B-01 4 87139 87139 A G Z95704.2 RNA 0.39 TCGA-DD-A73B-01 5 109178033 109178033 A G MAN2A1 Missense_Mutation p.I857M 0.45 deleterious(0.03) possibly_damaging(0.701) TCGA-DD-A73B-01 5 135510151 135510151 T C SMAD5 Missense_Mutation p.F362L 0.41 tolerated(0.53) benign(0.002) TCGA-DD-A73B-01 5 13913898 13913898 T C DNAH5 Missense_Mutation p.Q497R 0.52 benign(0.227) TCGA-DD-A73B-01 5 147593575 147593575 T C SPINK6 Missense_Mutation p.C62R 0.42 deleterious(0) probably_damaging(1) TCGA-DD-A73B-01 5 178360145 178360145 A G ZFP2 3'UTR 0.54 TCGA-DD-A73B-01 5 39308341 39308341 C T C9 Missense_Mutation p.G411S 0.41 tolerated(0.23) benign(0.196) TCGA-DD-A73B-01 5 43492341 43492341 A G C5orf34 Missense_Mutation p.I519T 0.42 tolerated(0.12) benign(0.009) TCGA-DD-A73B-01 5 58147340 58147340 A C RAB3C 3'UTR 0.40 TCGA-DD-A73B-01 5 72469597 72469597 T A TMEM174 Missense_Mutation p.M176K 0.44 tolerated(0.47) benign(0.037) TCGA-DD-A73B-01 6 12120242 12120242 C T HIVEP1 Nonsense_Mutation p.Q72* 0.04 TCGA-DD-A73B-01 6 18465336 18465336 C A RNF144B 3'UTR 0.43 TCGA-DD-A73B-01 6 20481488 20481488 T G E2F3 Missense_Mutation p.L186R 0.47 deleterious(0) probably_damaging(1) TCGA-DD-A73B-01 6 31974808 31974808 C A AL645922.1 Intron 0.09 TCGA-DD-A73B-01 6 31997490 31997490 A C C4B Missense_Mutation p.H1275P 0.22 tolerated(0.11) benign(0.317) TCGA-DD-A73B-01 6 69758094 69758094 C T BAI3 Missense_Mutation p.L709F 0.45 tolerated(0.43) possibly_damaging(0.525) TCGA-DD-A73B-01 7 100349486 100349486 C A ZAN Silent p.V586V 0.57 TCGA-DD-A73B-01 7 100478943 100478943 G T SRRT Nonsense_Mutation p.E54* 0.39 TCGA-DD-A73B-01 7 103202066 103202066 A G RELN Silent p.P1814P 0.46 TCGA-DD-A73B-01 7 111449457 111449457 T C DOCK4 Missense_Mutation p.I1003V 0.59 tolerated(1) benign(0.002) TCGA-DD-A73B-01 7 154645526 154645526 C G DPP6 Missense_Mutation p.T568R 0.34 tolerated(0.57) benign(0.001) TCGA-DD-A73B-01 7 41729922 41729922 C A INHBA Nonsense_Mutation p.E203* 0.29 TCGA-DD-A73B-01 7 44044517 44044517 C T SPDYE1 Intron 0.44 TCGA-DD-A73B-01 7 54621767 54621767 G A VSTM2A Intron 0.44 TCGA-DD-A73B-01 7 75932984 75932984 A C HSPB1 Intron 0.38 TCGA-DD-A73B-01 7 76796998 76796998 A G CCDC146 Missense_Mutation p.S5G 0.33 tolerated(0.19) unknown(0) TCGA-DD-A73B-01 7 83035265 83035265 T C SEMA3E Silent p.E308E 0.44 TCGA-DD-A73B-01 8 106813922 106813922 G A ZFPM2 Missense_Mutation p.V538I 0.97 deleterious(0.04) probably_damaging(0.99) TCGA-DD-A73B-01 9 114124389 114124389 G A KIAA0368 Missense_Mutation p.A1992V 0.53 tolerated(0.19) benign(0.019) TCGA-DD-A73B-01 9 127563878 127563878 G T OLFML2A Missense_Mutation p.Q285H 0.45 tolerated(0.1) possibly_damaging(0.713) TCGA-DD-A73B-01 9 127563879 127563879 G T OLFML2A Missense_Mutation p.A286S 0.45 tolerated(0.29) benign(0.36) TCGA-DD-A73B-01 9 127572139 127572139 C T OLFML2A Silent p.H469H 0.06 TCGA-DD-A73B-01 9 127996064 127996064 T C RABEPK Silent p.A308A 0.45 TCGA-DD-A73B-01 9 131152007 131152007 C T URM1 3'UTR 0.40 TCGA-DD-A73B-01 X 114426362 114426362 G A RBMXL3 Silent p.S786S 0.52 TCGA-DD-A73B-01 X 132161219 132161219 G A USP26 Missense_Mutation p.R344W 0.50 deleterious(0) possibly_damaging(0.601) TCGA-DD-A73B-01 X 34962716 34962716 A T FAM47B Missense_Mutation p.I590F 0.23 deleterious(0) probably_damaging(0.973) TCGA-DD-A73B-01 X 51150637 51150637 C G CXorf67 Missense_Mutation p.R257G 0.37 tolerated(0.33) possibly_damaging(0.501) TCGA-DD-A73C-01 10 124352076 124352076 G C DMBT1 Missense_Mutation p.C822S 0.32 deleterious(0.01) benign(0.142) TCGA-DD-A73C-01 10 124749801 124749801 A T PSTK 3'UTR 0.40 TCGA-DD-A73C-01 10 125447555 125447555 G A GPR26 Missense_Mutation p.R298Q 0.07 tolerated(0.1) possibly_damaging(0.701) TCGA-DD-A73C-01 10 129854474 129854474 C A PTPRE Missense_Mutation p.P170T 0.11 tolerated(0.12) benign(0.312) TCGA-DD-A73C-01 10 13234349 13234349 C G MCM10 Silent p.A538A 0.31 TCGA-DD-A73C-01 10 75896531 75896531 T C AP3M1 Missense_Mutation p.I102V 0.36 deleterious(0.04) benign(0.075) TCGA-DD-A73C-01 11 107923507 107923507 A G CUL5 Missense_Mutation p.I178V 0.37 tolerated(0.13) benign(0.164) TCGA-DD-A73C-01 11 115111039 115111039 G A CADM1 Silent p.L76L 0.23 TCGA-DD-A73C-01 11 129992322 129992322 A G APLP2 Missense_Mutation p.K279R 0.04 deleterious_low_confidence(0.04) benign(0.007) TCGA-DD-A73C-01 11 46880821 46880821 C A LRP4 Nonsense_Mutation p.E1811* 0.28 TCGA-DD-A73C-01 11 64434903 64434903 C T NRXN2 Silent p.G539G 0.10 TCGA-DD-A73C-01 11 65423177 65423177 C T RELA Missense_Mutation p.A339T 0.33 tolerated(0.34) benign(0.001) TCGA-DD-A73C-01 11 7335070 7335070 T C SYT9 Silent p.S314S 0.36 TCGA-DD-A73C-01 11 94533439 94533439 C T AMOTL1 Silent p.V361V 0.23 TCGA-DD-A73C-01 12 121416899 121416899 T A HNF1A Splice_Site p.X109_splice 0.19 TCGA-DD-A73C-01 12 21630878 21630878 C T RECQL Silent p.K242K 0.05 TCGA-DD-A73C-01 12 56081838 56081841 CTGC - ITGA7 Frame_Shift_Del p.A1037Kfs*19 0.30 TCGA-DD-A73C-01 12 56214115 56214116 GT - ORMDL2 Frame_Shift_Del p.V134Tfs*57 0.24 TCGA-DD-A73C-01 12 95424369 95424369 C A NR2C1 Intron 0.20 TCGA-DD-A73C-01 13 25284610 25284610 A G ATP12A Missense_Mutation p.R932G 0.29 deleterious(0) probably_damaging(1) TCGA-DD-A73C-01 14 19574226 19574226 G A POTEG Missense_Mutation p.G428E 0.13 tolerated(0.68) benign(0.031) TCGA-DD-A73C-01 14 19574227 19574227 A C POTEG Silent p.G428G 0.13 TCGA-DD-A73C-01 14 20898166 20898166 C T KLHL33 Missense_Mutation p.M223I 0.08 deleterious(0.04) benign(0.114) TCGA-DD-A73C-01 14 73964942 73964942 G T HEATR4 Silent p.I821I 0.40 TCGA-DD-A73C-01 14 77491726 77491726 G A IRF2BPL 3'UTR 0.33 TCGA-DD-A73C-01 14 78184553 78184553 C A SNW1 Missense_Mutation p.D497Y 0.33 deleterious(0) probably_damaging(0.997) TCGA-DD-A73C-01 14 96779439 96779439 T G ATG2B Missense_Mutation p.S1269R 0.16 deleterious(0) probably_damaging(0.996) TCGA-DD-A73C-01 15 65489133 65489133 C A CILP Missense_Mutation p.R1164L 0.34 tolerated(0.15) benign(0.129) TCGA-DD-A73C-01 16 30002417 30002417 G A TAOK2 3'Flank 0.12 TCGA-DD-A73C-01 16 53737970 53737970 T G FTO 5'UTR 0.24 TCGA-DD-A73C-01 16 74919609 74919609 C T WDR59 Silent p.E877E 0.34 TCGA-DD-A73C-01 16 9862753 9862753 C T GRIN2A Silent p.T850T 0.32 TCGA-DD-A73C-01 17 25633966 25633966 A G WSB1 Intron 0.25 TCGA-DD-A73C-01 17 3030650 3030650 G A OR1G1 Missense_Mutation p.L66F 0.29 deleterious(0) probably_damaging(0.991) TCGA-DD-A73C-01 17 40556905 40556905 C T PTRF Missense_Mutation p.V325I 0.34 tolerated(0.19) possibly_damaging(0.899) TCGA-DD-A73C-01 17 40872423 40872423 C G EZH1 Missense_Mutation p.E178Q 0.33 deleterious(0.02) probably_damaging(0.986) TCGA-DD-A73C-01 17 4442761 4442761 A C MYBBP1A Silent p.L1312L 0.34 TCGA-DD-A73C-01 17 45421602 45421602 T A EFCAB13 Missense_Mutation p.N126K 0.22 tolerated(0.12) benign(0.055) TCGA-DD-A73C-01 17 58121003 58121003 C A HEATR6 Missense_Mutation p.G1156V 0.42 tolerated(0.32) benign(0.046) TCGA-DD-A73C-01 17 80442749 80442749 C T NARF Silent p.H298H 0.05 TCGA-DD-A73C-01 18 12464886 12464886 C T SPIRE1 Silent p.E492E 0.06 TCGA-DD-A73C-01 18 44593424 44593424 G T KATNAL2 Missense_Mutation p.W181C 0.32 deleterious(0) probably_damaging(1) TCGA-DD-A73C-01 18 47110073 47110073 T C LIPG Silent p.S435S 0.03 TCGA-DD-A73C-01 19 35501096 35501096 C G GRAMD1A Silent p.T142T 0.35 TCGA-DD-A73C-01 19 47984228 47984228 T C KPTN Missense_Mutation p.H171R 0.24 deleterious(0) probably_damaging(0.999) TCGA-DD-A73C-01 19 50167999 50167999 G A IRF3 Missense_Mutation p.R33C 0.21 deleterious(0) probably_damaging(0.988) TCGA-DD-A73C-01 19 804341 804341 A G PTBP1 Missense_Mutation p.Y113C 0.34 tolerated(0.06) benign(0.213) TCGA-DD-A73C-01 19 966608 966608 G T ARID3A Missense_Mutation p.R412L 0.14 deleterious(0.03) benign(0.416) TCGA-DD-A73C-01 1 156815015 156815015 C T INSRR Missense_Mutation p.E764K 0.24 tolerated(0.06) possibly_damaging(0.831) TCGA-DD-A73C-01 1 157771365 157771365 G A FCRL1 Missense_Mutation p.P297S 0.38 tolerated(0.07) possibly_damaging(0.742) TCGA-DD-A73C-01 1 168165787 168165787 A C TIPRL Missense_Mutation p.R173S 0.45 deleterious(0) probably_damaging(1) TCGA-DD-A73C-01 1 180080224 180080224 G T CEP350 Missense_Mutation p.E3094D 0.27 benign(0.224) TCGA-DD-A73C-01 1 19525340 19525340 A T UBR4 Missense_Mutation p.M154K 0.33 possibly_damaging(0.728) TCGA-DD-A73C-01 1 3544159 3544159 C G TPRG1L Missense_Mutation p.A189G 0.34 deleterious(0) benign(0.06) TCGA-DD-A73C-01 1 878691 878691 C G SAMD11 Silent p.T541T 0.34 TCGA-DD-A73C-01 20 42159524 42159524 A T L3MBTL1 Missense_Mutation p.S405C 0.32 deleterious(0) benign(0.061) TCGA-DD-A73C-01 20 42159526 42159526 C T L3MBTL1 Silent p.S405S 0.33 TCGA-DD-A73C-01 21 30439333 30439333 T C CCT8 Silent p.V147V 0.29 TCGA-DD-A73C-01 21 35003837 35003837 T C CRYZL1 Silent p.Q7Q 0.35 TCGA-DD-A73C-01 22 16267054 16267054 T G POTEH Silent p.G465G 0.07 TCGA-DD-A73C-01 22 16267055 16267055 C T POTEH Missense_Mutation p.G465E 0.06 tolerated(0.77) benign(0.014) TCGA-DD-A73C-01 22 50969452 50969452 G A ODF3B Missense_Mutation p.P152S 0.04 tolerated(0.14) benign(0.099) TCGA-DD-A73C-01 2 174224163 174224163 G T CDCA7 Missense_Mutation p.D110Y 0.35 deleterious(0) probably_damaging(0.998) TCGA-DD-A73C-01 2 179435859 179435859 A G TTN Silent p.C25000C 0.39 TCGA-DD-A73C-01 2 185800896 185800896 A G ZNF804A Missense_Mutation p.H258R 0.07 deleterious(0.01) probably_damaging(0.966) TCGA-DD-A73C-01 2 18765784 18765784 C T NT5C1B Nonsense_Mutation p.W300* 0.23 TCGA-DD-A73C-01 2 211512674 211512674 G C CPS1 Missense_Mutation p.G1083R 0.25 deleterious(0) probably_damaging(1) TCGA-DD-A73C-01 2 37600060 37600060 G C QPCT 3'UTR 0.22 TCGA-DD-A73C-01 2 39041005 39041005 T C DHX57 Missense_Mutation p.I1213M 0.04 tolerated(0.45) benign(0.145) TCGA-DD-A73C-01 3 121410667 121410667 T A GOLGB1 Missense_Mutation p.E2515V 0.18 probably_damaging(0.98) TCGA-DD-A73C-01 3 143271227 143271227 C A SLC9A9 Missense_Mutation p.D356Y 0.42 deleterious(0) probably_damaging(0.963) TCGA-DD-A73C-01 3 170110171 170110171 A T SKIL Missense_Mutation p.Q674L 0.33 deleterious(0) probably_damaging(0.997) TCGA-DD-A73C-01 3 194408917 194408917 G A FAM43A 3'UTR 0.44 TCGA-DD-A73C-01 3 32801028 32801028 A C CNOT10 Missense_Mutation p.K618N 0.13 tolerated(0.44) benign(0.009) TCGA-DD-A73C-01 3 38263170 38263170 A G OXSR1 Missense_Mutation p.M198V 0.07 deleterious(0.03) possibly_damaging(0.751) TCGA-DD-A73C-01 3 3887625 3887625 C T LRRN1 Missense_Mutation p.R434C 0.09 deleterious(0.05) possibly_damaging(0.67) TCGA-DD-A73C-01 3 47163059 47163059 T C SETD2 Missense_Mutation p.S1023G 0.35 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-DD-A73C-01 3 49749928 49749930 TCT - RNF123 In_Frame_Del p.I838_Y839delinsN 0.29 TCGA-DD-A73C-01 3 53381602 53381602 C A DCP1A 5'UTR 0.36 TCGA-DD-A73C-01 4 128851953 128851953 T C MFSD8 Missense_Mutation p.M295V 0.05 deleterious(0) possibly_damaging(0.547) TCGA-DD-A73C-01 4 15516353 15516353 T A CC2D2A Silent p.G247G 0.38 TCGA-DD-A73C-01 4 184182412 184182412 C G WWC2 Missense_Mutation p.L546V 0.40 deleterious(0) probably_damaging(0.997) TCGA-DD-A73C-01 4 187557324 187557324 G T FAT1 Silent p.I1346I 0.31 TCGA-DD-A73C-01 4 52938154 52938154 G T SPATA18 Missense_Mutation p.R197L 0.23 tolerated(0.37) benign(0.009) TCGA-DD-A73C-01 4 57384922 57384922 C A ARL9 Nonsense_Mutation p.S32* 0.29 TCGA-DD-A73C-01 4 71201468 71201468 A - CABS1 Frame_Shift_Del p.I239* 0.27 TCGA-DD-A73C-01 5 127622452 127622452 G A FBN2 Missense_Mutation p.P2324S 0.42 deleterious(0.05) probably_damaging(0.994) TCGA-DD-A73C-01 5 13830842 13830842 C T DNAH5 Silent p.G1975G 0.34 TCGA-DD-A73C-01 5 140475012 140475012 C A PCDHB2 Missense_Mutation p.T213N 0.31 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-DD-A73C-01 5 167857166 167857182 TGCAATATTAATCATCC - WWC1 Frame_Shift_Del p.F675Lfs*4 0.33 TCGA-DD-A73C-01 5 180661549 180661549 G A TRIM41 Missense_Mutation p.G556D 0.40 deleterious(0.03) benign(0.401) TCGA-DD-A73C-01 5 39137761 39137761 C A FYB Nonsense_Mutation p.E496* 0.40 TCGA-DD-A73C-01 5 77805629 77805629 A G LHFPL2 Silent p.C136C 0.38 TCGA-DD-A73C-01 6 109762571 109762571 A T SMPD2 Missense_Mutation p.Y21F 0.37 tolerated(0.21) benign(0.013) TCGA-DD-A73C-01 6 132938436 132938436 A G TAAR2 Silent p.F303F 0.35 TCGA-DD-A73C-01 6 154360707 154360707 G T OPRM1 Missense_Mutation p.A103S 0.36 tolerated_low_confidence(0.15) benign(0.028) TCGA-DD-A73C-01 6 154360708 154360708 C T OPRM1 Missense_Mutation p.A103V 0.37 tolerated_low_confidence(0.1) benign(0.104) TCGA-DD-A73C-01 6 31860513 31860513 T A EHMT2 Splice_Site p.X223_splice 0.19 TCGA-DD-A73C-01 7 104753453 104753453 T G KMT2E Missense_Mutation p.F1750L 0.27 deleterious_low_confidence(0) benign(0.153) TCGA-DD-A73C-01 7 135347269 135347269 G A C7orf73 5'UTR 0.24 TCGA-DD-A73C-01 7 142574898 142574899 AG - TRPV6 Frame_Shift_Del p.F162Wfs*14 0.38 TCGA-DD-A73C-01 7 1589783 1589783 G T TMEM184A Silent p.I176I 0.36 TCGA-DD-A73C-01 7 40535937 40535937 C A SUGCT Silent p.V354V 0.30 TCGA-DD-A73C-01 7 95216812 95216812 A C PDK4 Missense_Mutation p.L300R 0.26 tolerated(0.72) possibly_damaging(0.838) TCGA-DD-A73C-01 7 99381763 99381763 T C CYP3A4 5'UTR 0.29 TCGA-DD-A73C-01 8 24254788 24254788 A G ADAMDEC1 Missense_Mutation p.Y149C 0.57 deleterious(0.01) benign(0.2) TCGA-DD-A73C-01 8 95404076 95404077 CA - RAD54B Frame_Shift_Del p.G524Tfs*5 0.29 TCGA-DD-A73C-01 9 114469021 114469021 C G C9orf84 Missense_Mutation p.S791T 0.24 tolerated(0.37) possibly_damaging(0.757) TCGA-DD-A73C-01 9 21481103 21481103 C T IFNE Silent p.K197K 0.32 TCGA-DD-A73C-01 9 26892425 26892425 C G CAAP1 Missense_Mutation p.G97R 0.25 tolerated_low_confidence(0.11) unknown(0) TCGA-DD-A73C-01 9 32543942 32543942 G C TOPORS Nonsense_Mutation p.S194* 0.30 TCGA-DD-A73C-01 X 12157090 12157090 C T FRMPD4 5'UTR 0.32 TCGA-DD-A73C-01 X 123176443 123176451 GACATATGC - STAG2 In_Frame_Del p.R137_Q140delinsK 0.24 TCGA-DD-A73C-01 X 132887923 132887923 T G GPC3 Missense_Mutation p.K206N 0.05 tolerated(0.65) benign(0.254) TCGA-DD-A73C-01 X 17746802 17746802 C T NHS Missense_Mutation p.P1398L 0.39 deleterious(0.02) probably_damaging(1) TCGA-DD-A73C-01 X 21515935 21515935 C A CNKSR2 Missense_Mutation p.L238I 0.06 deleterious(0) benign(0.106) TCGA-DD-A73C-01 X 48933031 48933031 G A WDR45 Silent p.R274R 0.31 TCGA-DD-A73C-01 X 79698133 79698133 A T FAM46D Missense_Mutation p.N32I 0.37 deleterious(0) probably_damaging(0.987) TCGA-DD-A73D-01 10 124672364 124672364 C G FAM24A Missense_Mutation p.T71S 0.47 tolerated(0.56) benign(0.058) TCGA-DD-A73D-01 10 21807691 21807691 G T SKIDA1 5'UTR 0.17 TCGA-DD-A73D-01 10 22607754 22607754 T G COMMD3 Missense_Mutation p.M144R 0.19 deleterious(0.01) possibly_damaging(0.629) TCGA-DD-A73D-01 11 117864027 117864027 A T IL10RA Missense_Mutation p.R147W 0.39 deleterious(0) probably_damaging(0.995) TCGA-DD-A73D-01 11 120008342 120008342 G A TRIM29 Missense_Mutation p.S133L 0.32 deleterious(0) benign(0.104) TCGA-DD-A73D-01 11 124440804 124440804 A C OR8A1 Silent p.T280T 0.46 TCGA-DD-A73D-01 11 46407538 46407538 C G CHRM4 Silent p.L190L 0.48 TCGA-DD-A73D-01 11 56510613 56510613 G T OR9G4 Missense_Mutation p.S225R 0.52 deleterious(0.02) possibly_damaging(0.529) TCGA-DD-A73D-01 11 62373664 62373664 C T EML3 Silent p.Q509Q 0.33 TCGA-DD-A73D-01 11 63886531 63886531 C T FLRT1 3'UTR 0.51 TCGA-DD-A73D-01 11 6661102 6661102 A G DCHS1 Silent p.T581T 0.37 TCGA-DD-A73D-01 11 93402866 93402866 C T KIAA1731 Missense_Mutation p.A153V 0.41 deleterious(0.04) probably_damaging(0.954) TCGA-DD-A73D-01 12 122687883 122687883 C T LRRC43 Missense_Mutation p.P622L 0.40 tolerated(0.35) benign(0.058) TCGA-DD-A73D-01 12 46215247 46215247 A - ARID2 Frame_Shift_Del p.K228Rfs*64 0.28 TCGA-DD-A73D-01 12 67701255 67701255 T - CAND1 Frame_Shift_Del p.L1003Rfs*2 0.34 TCGA-DD-A73D-01 13 113803570 113803570 G A F10 Missense_Mutation p.M402I 0.50 deleterious(0) probably_damaging(0.991) TCGA-DD-A73D-01 14 24631525 24631525 T G IRF9 Missense_Mutation p.F58V 0.34 tolerated(0.05) possibly_damaging(0.645) TCGA-DD-A73D-01 14 24631526 24631526 T C IRF9 Missense_Mutation p.F58S 0.34 deleterious(0.01) probably_damaging(0.966) TCGA-DD-A73D-01 14 52186983 52187007 ACTCCAGCAGTGCCATCCACCGCAA - FRMD6 Frame_Shift_Del p.Y412Cfs*2 0.24 TCGA-DD-A73D-01 14 86091325 86091325 T C FLRT2 3'UTR 0.50 TCGA-DD-A73D-01 15 56683606 56683606 C T TEX9 Silent p.D187D 0.47 TCGA-DD-A73D-01 15 59500440 59500440 G A LDHAL6B 3'UTR 0.53 TCGA-DD-A73D-01 15 75221554 75221554 G C COX5A Missense_Mutation p.C40W 0.45 tolerated(0.09) probably_damaging(0.924) TCGA-DD-A73D-01 16 1412312 1412312 G A GNPTG Missense_Mutation p.A173T 0.39 deleterious(0.04) benign(0.23) TCGA-DD-A73D-01 16 30507788 30507788 T C ITGAL Missense_Mutation p.I578T 0.45 deleterious(0) possibly_damaging(0.564) TCGA-DD-A73D-01 17 11737970 11737970 G A DNAH9 Missense_Mutation p.A3088T 0.45 benign(0.285) TCGA-DD-A73D-01 17 1374598 1374598 G A MYO1C Missense_Mutation p.T685M 0.07 tolerated(0.05) possibly_damaging(0.835) TCGA-DD-A73D-01 17 38175704 38175704 A T MED24 3'UTR 0.81 TCGA-DD-A73D-01 17 79226202 79226202 C T SLC38A10 Missense_Mutation p.V580I 0.14 tolerated(0.09) benign(0.033) TCGA-DD-A73D-01 19 10204121 10204121 G A ANGPTL6 Missense_Mutation p.R376W 0.43 deleterious(0) probably_damaging(1) TCGA-DD-A73D-01 19 13054718 13054718 C G CALR Missense_Mutation p.D415E 0.46 tolerated_low_confidence(0.29) unknown(0) TCGA-DD-A73D-01 19 14516639 14516639 T - CD97 Frame_Shift_Del p.L570Rfs*61 0.35 TCGA-DD-A73D-01 19 3273900 3273900 G A CELF5 Missense_Mutation p.D125N 0.29 deleterious(0.02) benign(0.002) TCGA-DD-A73D-01 19 39959925 39959925 C T SUPT5H Nonsense_Mutation p.Q421* 0.06 TCGA-DD-A73D-01 19 40408468 40408468 C T FCGBP Silent p.K1457K 0.36 TCGA-DD-A73D-01 19 40903727 40903727 G T PRX Missense_Mutation p.P178T 0.52 deleterious(0.03) possibly_damaging(0.803) TCGA-DD-A73D-01 19 41622416 41622416 G A CYP2F1 Silent p.V76V 0.39 TCGA-DD-A73D-01 19 44739094 44739097 TTTT - ZNF227 Frame_Shift_Del p.F171Gfs*12 0.40 TCGA-DD-A73D-01 19 46095354 46095354 G T GPR4 5'UTR 0.53 TCGA-DD-A73D-01 19 49002759 49002759 C A LMTK3 Missense_Mutation p.V552L 0.45 probably_damaging(0.952) TCGA-DD-A73D-01 19 51960896 51960896 C A SIGLEC8 Silent p.G184G 0.39 TCGA-DD-A73D-01 19 53793554 53793554 C T BIRC8 Missense_Mutation p.R25K 0.41 tolerated(0.39) benign(0.158) TCGA-DD-A73D-01 19 6697550 6697550 G A C3 Silent p.L867L 0.47 TCGA-DD-A73D-01 1 144868027 144868027 G T PDE4DIP Nonsense_Mutation p.Y1804* 0.35 TCGA-DD-A73D-01 1 151105186 151105186 C T SEMA6C Missense_Mutation p.G888D 0.23 tolerated_low_confidence(0.2) benign(0.003) TCGA-DD-A73D-01 1 155290504 155290504 A G RUSC1 5'Flank 0.28 TCGA-DD-A73D-01 1 158517298 158517298 C A OR6Y1 Missense_Mutation p.A200S 0.51 deleterious(0.01) probably_damaging(0.956) TCGA-DD-A73D-01 1 16064682 16064682 G T SLC25A34 Missense_Mutation p.G180V 0.47 deleterious(0) probably_damaging(0.943) TCGA-DD-A73D-01 1 175914029 175914029 A T RFWD2 3'UTR 0.49 TCGA-DD-A73D-01 1 193111054 193111054 C G CDC73 Missense_Mutation p.T196S 0.19 deleterious(0.02) probably_damaging(0.928) TCGA-DD-A73D-01 1 197896793 197896793 G A LHX9 Missense_Mutation p.R269H 0.53 deleterious(0) probably_damaging(0.999) TCGA-DD-A73D-01 1 203276577 203276581 CCCCG - BTG2 3'UTR 0.26 TCGA-DD-A73D-01 1 212538414 212538414 A C TMEM206 3'UTR 0.18 TCGA-DD-A73D-01 1 212538435 212538435 T G TMEM206 3'UTR 0.16 TCGA-DD-A73D-01 1 220791830 220791830 G T MARK1 Missense_Mutation p.G244V 0.22 deleterious(0.03) probably_damaging(1) TCGA-DD-A73D-01 1 224009040 224009040 A C TP53BP2 Missense_Mutation p.N19K 0.50 deleterious(0) benign(0.11) TCGA-DD-A73D-01 1 225284905 225284905 A G DNAH14 Missense_Mutation p.Y298C 0.05 deleterious(0.01) probably_damaging(0.986) TCGA-DD-A73D-01 1 241667442 241667442 C T FH Missense_Mutation p.M336I 0.49 deleterious(0) possibly_damaging(0.786) TCGA-DD-A73D-01 1 241667444 241667444 T G FH Missense_Mutation p.M336L 0.50 deleterious(0.03) benign(0.098) TCGA-DD-A73D-01 1 46867761 46867761 A G FAAH Splice_Site p.X66_splice 0.35 TCGA-DD-A73D-01 1 54477846 54477846 G A LDLRAD1 Missense_Mutation p.H104Y 0.63 tolerated(0.08) benign(0.014) TCGA-DD-A73D-01 20 44664102 44664102 C A SLC12A5 Silent p.T92T 0.42 TCGA-DD-A73D-01 21 34443841 34443841 C T OLIG1 3'UTR 0.25 TCGA-DD-A73D-01 21 35478310 35478310 A G SLC5A3 3'UTR 0.44 TCGA-DD-A73D-01 2 110375103 110375103 T G SOWAHC 3'UTR 0.39 TCGA-DD-A73D-01 2 116503668 116503668 C G DPP10 Missense_Mutation p.Q291E 0.58 tolerated(0.52) benign(0.019) TCGA-DD-A73D-01 2 160289818 160289818 G C BAZ2B Missense_Mutation p.S450R 0.31 benign(0.307) TCGA-DD-A73D-01 2 174820570 174820570 T C SP3 Missense_Mutation p.I224V 0.64 tolerated(0.24) benign(0.011) TCGA-DD-A73D-01 2 179560965 179560965 A G TTN Silent p.A10278A 0.59 TCGA-DD-A73D-01 2 191872330 191872330 C T STAT1 Missense_Mutation p.E111K 0.59 tolerated(0.22) probably_damaging(0.976) TCGA-DD-A73D-01 2 220344732 220344732 C T SPEG Missense_Mutation p.R1738W 0.05 probably_damaging(0.997) TCGA-DD-A73D-01 2 231931711 231931711 C T PSMD1 Silent p.G132G 0.14 TCGA-DD-A73D-01 2 232578235 232578235 T A PTMA 3'UTR 0.27 TCGA-DD-A73D-01 3 157098983 157098983 A C VEPH1 Silent p.L363L 0.40 TCGA-DD-A73D-01 3 16217085 16217085 G A GALNT15 Missense_Mutation p.V143M 0.52 tolerated(0.11) benign(0.008) TCGA-DD-A73D-01 3 31725509 31725509 C A OSBPL10 Missense_Mutation p.G448V 0.54 deleterious(0.01) probably_damaging(0.989) TCGA-DD-A73D-01 3 41266098 41266098 A G CTNNB1 Missense_Mutation p.D32G 0.55 deleterious(0.01) possibly_damaging(0.452) TCGA-DD-A73D-01 3 49152516 49152516 C A USP19 Missense_Mutation p.G684V 0.47 deleterious(0) probably_damaging(1) TCGA-DD-A73D-01 3 50677796 50677796 G A MAPKAPK3 Splice_Site p.X74_splice 0.44 TCGA-DD-A73D-01 3 9987746 9987746 T G PRRT3 3'UTR 0.67 TCGA-DD-A73D-01 4 121732583 121732583 A G PRDM5 Missense_Mutation p.I296T 0.42 tolerated(0.63) benign(0.004) TCGA-DD-A73D-01 4 15067830 15067830 C T CPEB2 Silent p.G977G 0.36 TCGA-DD-A73D-01 4 55604594 55604594 G T KIT Splice_Site p.X935_splice 0.46 TCGA-DD-A73D-01 5 140741917 140741917 G T PCDHGB2 Missense_Mutation p.V739F 0.33 tolerated(0.83) benign(0.039) TCGA-DD-A73D-01 5 157065387 157065387 A T SOX30 Missense_Mutation p.S577R 0.44 deleterious(0.01) possibly_damaging(0.478) TCGA-DD-A73D-01 5 16701140 16701140 G A MYO10 Missense_Mutation p.R1122C 0.37 deleterious_low_confidence(0) possibly_damaging(0.791) TCGA-DD-A73D-01 5 34688294 34688294 T C RAI14 5'UTR 0.44 TCGA-DD-A73D-01 5 54420777 54420777 C A CDC20B Missense_Mutation p.A357S 0.09 tolerated(0.67) possibly_damaging(0.49) TCGA-DD-A73D-01 6 26056179 26056179 T C HIST1H1C Missense_Mutation p.K160E 0.78 deleterious(0.01) unknown(0) TCGA-DD-A73D-01 6 30043421 30043421 G A RNF39 Missense_Mutation p.A49V 0.05 deleterious_low_confidence(0) benign(0.147) TCGA-DD-A73D-01 6 30712289 30712289 G A IER3 Missense_Mutation p.H3Y 0.77 tolerated(0.36) possibly_damaging(0.839) TCGA-DD-A73D-01 6 39073112 39073112 A T SAYSD1 3'UTR 0.21 TCGA-DD-A73D-01 6 41566906 41566906 G A FOXP4 3'UTR 0.31 TCGA-DD-A73D-01 6 88854115 88854115 C T CNR1 Silent p.A293A 0.43 TCGA-DD-A73D-01 7 126086303 126086303 G A GRM8 Missense_Mutation p.R852C 0.41 deleterious(0) possibly_damaging(0.791) TCGA-DD-A73D-01 7 42017201 42017201 C A GLI3 Missense_Mutation p.A590S 0.66 deleterious(0) probably_damaging(0.996) TCGA-DD-A73D-01 8 126044596 126044596 T A KIAA0196 Silent p.P1074P 0.35 TCGA-DD-A73D-01 8 140631270 140631270 G T KCNK9 Missense_Mutation p.P119Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-DD-A73D-01 8 68087800 68087800 C T CSPP1 Intron 0.24 TCGA-DD-A73D-01 8 79598709 79598709 C A ZC2HC1A Missense_Mutation p.P73Q 0.30 deleterious(0) probably_damaging(0.996) TCGA-DD-A73D-01 9 115812177 115812177 A G ZFP37 Intron 0.39 TCGA-DD-A73D-01 9 131339464 131339464 A G SPTAN1 Missense_Mutation p.D281G 0.47 deleterious(0) probably_damaging(0.994) TCGA-DD-A73D-01 X 102974160 102974160 C T GLRA4 Missense_Mutation p.R253Q 0.43 deleterious(0) benign(0.442) TCGA-DD-A73D-01 X 134420987 134420987 T G ZNF75D 3'UTR 0.47 TCGA-DD-A73D-01 X 148713418 148713419 - CGCCGC TMEM185A 5'UTR 0.32 TCGA-DD-A73D-01 X 73812012 73812012 T A RLIM Missense_Mutation p.S380C 0.52 deleterious(0) unknown(0) TCGA-DD-A73E-01 10 22676816 22676816 T C SPAG6 Missense_Mutation p.V248A 0.44 deleterious(0.04) benign(0.109) TCGA-DD-A73E-01 10 43694401 43694401 C A RASGEF1A Missense_Mutation p.A338S 0.36 deleterious(0.04) benign(0.349) TCGA-DD-A73E-01 10 48373662 48373662 G T ZNF488 3'UTR 0.53 TCGA-DD-A73E-01 10 70243246 70243246 A T SLC25A16 Silent p.S314S 0.20 TCGA-DD-A73E-01 10 71899886 71899886 T A TYSND1 Missense_Mutation p.S499C 0.45 deleterious(0) probably_damaging(0.999) TCGA-DD-A73E-01 10 73453964 73453964 T G CDH23 Missense_Mutation p.V338G 0.41 deleterious(0) probably_damaging(0.992) TCGA-DD-A73E-01 11 103175403 103175403 T G DYNC2H1 Missense_Mutation p.L3786W 0.40 probably_damaging(0.994) TCGA-DD-A73E-01 11 107299752 107299752 A G CWF19L2 Silent p.C402C 0.50 TCGA-DD-A73E-01 11 107462580 107462580 C T AP000889.3 Silent p.L33L 0.47 TCGA-DD-A73E-01 11 108168011 108168011 T A ATM Intron 0.36 TCGA-DD-A73E-01 11 1267649 1267649 C T MUC5B Missense_Mutation p.T3180M 0.18 unknown(0) TCGA-DD-A73E-01 11 30032269 30032269 C A KCNA4 Missense_Mutation p.V653L 0.41 deleterious_low_confidence(0.03) possibly_damaging(0.891) TCGA-DD-A73E-01 11 44331617 44331617 G T ALX4 5'UTR 0.50 TCGA-DD-A73E-01 11 46912023 46912023 C T LRP4 Missense_Mutation p.G574S 0.54 deleterious(0.01) probably_damaging(0.984) TCGA-DD-A73E-01 11 57995924 57995924 G A OR10Q1 Missense_Mutation p.R142C 0.50 tolerated(0.24) benign(0.003) TCGA-DD-A73E-01 11 5809718 5809718 G A OR52N1 Missense_Mutation p.T110I 0.54 deleterious(0.03) probably_damaging(0.946) TCGA-DD-A73E-01 11 64603631 64603631 G A CDC42BPG Silent p.A542A 0.36 TCGA-DD-A73E-01 11 71146469 71146469 C T DHCR7 Silent p.E460E 0.25 TCGA-DD-A73E-01 11 71202924 71202924 A C NADSYN1 Missense_Mutation p.D580A 0.23 tolerated(0.33) benign(0.021) TCGA-DD-A73E-01 11 94113887 94113887 G T GPR83 Missense_Mutation p.L234I 0.12 tolerated(0.07) possibly_damaging(0.461) TCGA-DD-A73E-01 11 99690405 99690405 G T CNTN5 Silent p.L62L 0.20 TCGA-DD-A73E-01 12 113553809 113553809 C T RASAL1 Missense_Mutation p.R260H 0.47 tolerated(0.23) benign(0.039) TCGA-DD-A73E-01 12 123461262 123461262 T G OGFOD2 Missense_Mutation p.L24R 0.49 tolerated(0.17) benign(0.038) TCGA-DD-A73E-01 12 123706428 123706430 CTC - MPHOSPH9 5'UTR 0.47 TCGA-DD-A73E-01 12 53552186 53552186 C A CSAD 3'UTR 0.40 TCGA-DD-A73E-01 12 69986800 69986800 A G CCT2 Silent p.A265A 0.31 TCGA-DD-A73E-01 12 7076910 7076910 C G PHB2 Missense_Mutation p.V214L 0.38 deleterious(0) probably_damaging(0.999) TCGA-DD-A73E-01 13 113793724 113793724 G T F10 Missense_Mutation p.G104C 0.31 deleterious(0) probably_damaging(1) TCGA-DD-A73E-01 13 114204185 114204185 T C TMCO3 3'UTR 0.50 TCGA-DD-A73E-01 13 32376631 32376631 T C RXFP2 3'UTR 0.43 TCGA-DD-A73E-01 13 73346392 73346392 G T DIS3 Missense_Mutation p.L470M 0.07 deleterious(0) probably_damaging(0.984) TCGA-DD-A73E-01 14 37641732 37641732 G C SLC25A21-AS1 Missense_Mutation p.A48P 0.28 unknown(0) TCGA-DD-A73E-01 14 57876258 57876258 A G NAA30 3'UTR 0.50 TCGA-DD-A73E-01 14 61275080 61275080 C T MNAT1 Silent p.T118T 0.48 TCGA-DD-A73E-01 15 41803628 41803628 C G LTK Missense_Mutation p.G269A 0.36 tolerated_low_confidence(0.16) probably_damaging(0.998) TCGA-DD-A73E-01 15 63571457 63571457 C T APH1B Silent p.L71L 0.09 TCGA-DD-A73E-01 15 64446738 64446738 G A SNX22 3'UTR 0.44 TCGA-DD-A73E-01 15 69331285 69331285 A G NOX5 Missense_Mutation p.Y487C 0.45 deleterious(0) possibly_damaging(0.551) TCGA-DD-A73E-01 15 77310541 77310541 T C PSTPIP1 Missense_Mutation p.L30P 0.10 tolerated(0.21) possibly_damaging(0.718) TCGA-DD-A73E-01 15 92397220 92397220 A G SLCO3A1 Missense_Mutation p.K28E 0.38 tolerated(1) benign(0) TCGA-DD-A73E-01 16 70841914 70841914 C A HYDIN Missense_Mutation p.G4979C 0.50 benign(0.381) TCGA-DD-A73E-01 16 72828036 72828036 C G ZFHX3 Missense_Mutation p.D2849H 0.51 unknown(0) TCGA-DD-A73E-01 16 75147448 75147448 C A LDHD Silent p.T380T 0.49 TCGA-DD-A73E-01 16 88696976 88696976 G T ZC3H18 Missense_Mutation p.A884S 0.44 tolerated_low_confidence(0.06) probably_damaging(0.959) TCGA-DD-A73E-01 17 10223741 10223741 C T MYH13 Missense_Mutation p.D1062N 0.85 deleterious(0.01) benign(0.322) TCGA-DD-A73E-01 17 10549294 10549294 C T MYH3 Silent p.E318E 0.05 TCGA-DD-A73E-01 17 26723269 26723269 C T SARM1 Silent p.T679T 0.57 TCGA-DD-A73E-01 17 33935332 33935332 A G AP2B1 Missense_Mutation p.I151V 0.60 tolerated(0.08) benign(0.001) TCGA-DD-A73E-01 17 38560724 38560724 G T TOP2A Missense_Mutation p.T689N 0.54 tolerated(0.43) benign(0) TCGA-DD-A73E-01 17 39521232 39521232 G A KRT33B Missense_Mutation p.T299M 0.56 deleterious(0.04) probably_damaging(0.929) TCGA-DD-A73E-01 17 47302389 47302389 C A PHOSPHO1 Missense_Mutation p.C33F 0.55 tolerated_low_confidence(0.74) benign(0.094) TCGA-DD-A73E-01 17 59482800 59482800 G A TBX2 Missense_Mutation p.R430Q 0.36 tolerated(0.08) probably_damaging(0.992) TCGA-DD-A73E-01 17 60767109 60767109 G A MRC2 Silent p.L1187L 0.58 TCGA-DD-A73E-01 17 61568363 61568363 C A ACE Missense_Mutation p.P897H 0.39 deleterious(0) probably_damaging(1) TCGA-DD-A73E-01 17 72921033 72921033 G T OTOP2 Missense_Mutation p.W102C 0.35 deleterious(0) probably_damaging(0.964) TCGA-DD-A73E-01 18 31319755 31319755 A T ASXL3 Missense_Mutation p.N796I 0.28 benign(0.193) TCGA-DD-A73E-01 18 34289345 34289345 A T FHOD3 Missense_Mutation p.R667W 0.65 deleterious(0.01) probably_damaging(0.92) TCGA-DD-A73E-01 18 54358525 54358525 G A WDR7 Missense_Mutation p.V266I 0.24 tolerated(0.76) benign(0.001) TCGA-DD-A73E-01 18 56936200 56936200 G T RAX 3'UTR 0.12 TCGA-DD-A73E-01 19 11339631 11339631 G T DOCK6 Missense_Mutation p.F933L 0.05 deleterious(0.01) benign(0.216) TCGA-DD-A73E-01 19 11976931 11976931 G T ZNF439 5'UTR 0.08 TCGA-DD-A73E-01 19 13220610 13220610 C T TRMT1 Silent p.E383E 0.34 TCGA-DD-A73E-01 19 14740911 14740911 G T EMR3 Silent p.T584T 0.44 TCGA-DD-A73E-01 19 15233713 15233713 C A ILVBL Silent p.S198S 0.31 TCGA-DD-A73E-01 19 35740010 35740010 C T LSR Missense_Mutation p.L77F 0.33 tolerated(0.22) benign(0.375) TCGA-DD-A73E-01 19 36221665 36221665 C A KMT2B Nonsense_Mutation p.C1778* 0.37 TCGA-DD-A73E-01 19 3785135 3785135 G A MATK Intron 0.51 TCGA-DD-A73E-01 19 38818018 38818018 C T KCNK6 Missense_Mutation p.T306I 0.50 tolerated(0.08) benign(0.049) TCGA-DD-A73E-01 19 42569934 42569934 C A GRIK5 5'Flank 0.40 TCGA-DD-A73E-01 19 53384284 53384284 A C ZNF320 Silent p.A365A 0.41 TCGA-DD-A73E-01 19 55435072 55435072 G T NLRP7 3'UTR 0.06 TCGA-DD-A73E-01 19 56393107 56393107 G A NLRP4 3'UTR 0.60 TCGA-DD-A73E-01 1 148004618 148004618 T C NBPF14 Missense_Mutation p.N905S 0.67 tolerated(0.37) benign(0.143) TCGA-DD-A73E-01 1 155172876 155172876 C A THBS3 Splice_Site p.X270_splice 0.43 TCGA-DD-A73E-01 1 155448114 155448114 C G ASH1L Missense_Mutation p.R1516P 0.36 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-DD-A73E-01 1 171251220 171251220 G T FMO1 Missense_Mutation p.V311F 0.12 deleterious(0) probably_damaging(0.998) TCGA-DD-A73E-01 1 17248518 17248518 G A CROCC Missense_Mutation p.S2N 0.19 benign(0.018) TCGA-DD-A73E-01 1 179604969 179604969 G C TDRD5 Silent p.R489R 0.39 TCGA-DD-A73E-01 1 181693632 181693632 A G CACNA1E Missense_Mutation p.I701V 0.45 tolerated(0.11) benign(0.112) TCGA-DD-A73E-01 1 197407733 197407733 A G CRB1 Missense_Mutation p.Y1269C 0.36 deleterious(0.03) benign(0.216) TCGA-DD-A73E-01 1 200870192 200870194 AGG - C1orf106 In_Frame_Del p.E144del 0.33 TCGA-DD-A73E-01 1 20466020 20466020 C T PLA2G2F Missense_Mutation p.P34S 0.48 tolerated(0.11) benign(0.242) TCGA-DD-A73E-01 1 220276901 220276901 T A IARS2 Missense_Mutation p.S355T 0.24 tolerated(0.58) benign(0.014) TCGA-DD-A73E-01 1 228461468 228461468 C T OBSCN Intron 0.27 TCGA-DD-A73E-01 1 228467595 228467595 C T OBSCN Silent p.C2919C 0.32 TCGA-DD-A73E-01 1 22987600 22987600 C T C1QB Silent p.T161T 0.46 TCGA-DD-A73E-01 1 230846423 230846423 A G AGT Silent p.N58N 0.26 TCGA-DD-A73E-01 1 247024551 247024551 C A AHCTF1 Missense_Mutation p.C1270F 0.28 tolerated(0.72) benign(0.055) TCGA-DD-A73E-01 1 247752217 247752217 G A OR2G2 Missense_Mutation p.V186M 0.32 deleterious(0) probably_damaging(0.989) TCGA-DD-A73E-01 1 248569357 248569357 C A OR2T1 Missense_Mutation p.T21K 0.34 deleterious_low_confidence(0.03) benign(0.003) TCGA-DD-A73E-01 1 40770037 40770037 G - COL9A2 Frame_Shift_Del p.G415Efs*116 0.32 TCGA-DD-A73E-01 1 60520924 60520924 G A C1orf87 Silent p.N98N 0.44 TCGA-DD-A73E-01 1 85561679 85561679 T A WDR63 Silent p.I413I 0.35 TCGA-DD-A73E-01 1 87040355 87040355 G A CLCA4 Missense_Mutation p.D534N 0.40 deleterious(0.04) possibly_damaging(0.521) TCGA-DD-A73E-01 20 10654131 10654131 G T JAG1 Silent p.L16L 0.34 TCGA-DD-A73E-01 20 29633928 29633928 A C FRG1B 3'UTR 0.03 TCGA-DD-A73E-01 20 42826241 42826248 GCTTTTGT - OSER1 Frame_Shift_Del p.H108Pfs*3 0.39 TCGA-DD-A73E-01 20 43036067 43036067 C T HNF4A Missense_Mutation p.R113C 0.40 deleterious(0) probably_damaging(0.999) TCGA-DD-A73E-01 20 43384718 43384718 C T RIMS4 3'UTR 0.50 TCGA-DD-A73E-01 20 47865291 47865291 A G ZNFX1 Missense_Mutation p.Y1424H 0.52 tolerated(0.54) benign(0) TCGA-DD-A73E-01 20 50407317 50407317 G A SALL4 Missense_Mutation p.L569F 0.49 tolerated(0.07) benign(0.025) TCGA-DD-A73E-01 20 57089891 57089891 G A APCDD1L 5'UTR 0.42 TCGA-DD-A73E-01 21 27840751 27840751 T C CYYR1 3'UTR 0.30 TCGA-DD-A73E-01 22 32487698 32487698 A G SLC5A1 Missense_Mutation p.Y410C 0.46 deleterious(0) probably_damaging(0.986) TCGA-DD-A73E-01 22 37906419 37906419 G T CARD10 Missense_Mutation p.L237I 0.07 deleterious(0) benign(0.284) TCGA-DD-A73E-01 22 38690173 38690173 T C CSNK1E Missense_Mutation p.N387S 0.51 tolerated_low_confidence(0.09) benign(0.079) TCGA-DD-A73E-01 2 135976732 135976732 C T ZRANB3 Missense_Mutation p.S756N 0.30 tolerated(1) benign(0) TCGA-DD-A73E-01 2 138414638 138414638 G A THSD7B Missense_Mutation p.G1431D 0.37 deleterious(0) unknown(0) TCGA-DD-A73E-01 2 141707938 141707938 C A LRP1B Missense_Mutation p.G1001V 0.35 probably_damaging(0.998) TCGA-DD-A73E-01 2 1488375 1488375 C T TPO Missense_Mutation p.T449I 0.35 deleterious(0.03) probably_damaging(0.994) TCGA-DD-A73E-01 2 152729009 152729009 T C CACNB4 Splice_Site p.X174_splice 0.45 TCGA-DD-A73E-01 2 166245504 166245504 G T SCN2A Missense_Mutation p.D1730Y 0.18 tolerated(0.42) probably_damaging(1) TCGA-DD-A73E-01 2 166898866 166898866 T C SCN1A Silent p.L704L 0.41 TCGA-DD-A73E-01 2 178416097 178416097 A T TTC30B Silent p.A465A 0.45 TCGA-DD-A73E-01 2 179590676 179590676 C G TTN Missense_Mutation p.E6791D 0.54 TCGA-DD-A73E-01 2 1915791 1915791 C A MYT1L Splice_Site p.X568_splice 0.27 TCGA-DD-A73E-01 2 208866092 208866092 G T PLEKHM3 Missense_Mutation p.A91D 0.06 deleterious(0.01) benign(0.424) TCGA-DD-A73E-01 2 218700829 218700829 G T TNS1 Missense_Mutation p.P913H 0.57 tolerated(0.05) probably_damaging(0.971) TCGA-DD-A73E-01 2 234160386 234160386 C T ATG16L1 5'UTR 0.30 TCGA-DD-A73E-01 2 238991957 238991957 G T SCLY Missense_Mutation p.M290I 0.04 deleterious(0.03) possibly_damaging(0.473) TCGA-DD-A73E-01 2 74783058 74783058 C T DOK1 Silent p.A164A 0.32 TCGA-DD-A73E-01 2 99861785 99861785 A G LYG2 Silent p.H107H 0.55 TCGA-DD-A73E-01 3 119306620 119306620 G A ADPRH Silent p.V323V 0.51 TCGA-DD-A73E-01 3 154021173 154021173 C T DHX36 Missense_Mutation p.G388S 0.34 deleterious(0) probably_damaging(0.995) TCGA-DD-A73E-01 3 160156300 160156300 T A TRIM59 Missense_Mutation p.R224S 0.31 tolerated(0.08) benign(0.066) TCGA-DD-A73E-01 3 183956399 183956399 C G VWA5B2 Missense_Mutation p.S647C 0.22 deleterious(0) possibly_damaging(0.738) TCGA-DD-A73E-01 3 186362632 186362632 G T FETUB Nonsense_Mutation p.E173* 0.06 TCGA-DD-A73E-01 3 29977613 29977613 T C RBMS3 Missense_Mutation p.S326P 0.54 deleterious(0.04) probably_damaging(0.968) TCGA-DD-A73E-01 3 29977619 29977619 C A RBMS3 Missense_Mutation p.Q328K 0.54 deleterious(0) benign(0.056) TCGA-DD-A73E-01 3 38292941 38292941 G T OXSR1 Missense_Mutation p.D475Y 0.53 deleterious(0) probably_damaging(0.993) TCGA-DD-A73E-01 3 38921513 38921513 T C SCN11A Silent p.L1107L 0.36 TCGA-DD-A73E-01 3 41266098 41266098 A T CTNNB1 Missense_Mutation p.D32V 0.36 deleterious(0) probably_damaging(0.988) TCGA-DD-A73E-01 3 47552690 47552690 G T ELP6 Silent p.A27A 0.06 TCGA-DD-A73E-01 3 49152692 49152692 G A USP19 Missense_Mutation p.T662I 0.35 deleterious(0.01) probably_damaging(0.993) TCGA-DD-A73E-01 3 52860642 52860642 T C ITIH4 Missense_Mutation p.Q182R 0.60 deleterious(0) possibly_damaging(0.844) TCGA-DD-A73E-01 3 69072289 69072289 T C TMF1 3'UTR 0.50 TCGA-DD-A73E-01 4 120182988 120182988 G T USP53 Missense_Mutation p.W314L 0.48 deleterious(0.01) probably_damaging(1) TCGA-DD-A73E-01 4 146648100 146648100 A G C4orf51 Silent p.S115S 0.27 TCGA-DD-A73E-01 4 158043481 158043481 G C GLRB Splice_Site p.X77_splice 0.24 TCGA-DD-A73E-01 4 162307497 162307497 G A FSTL5 Missense_Mutation p.P649L 0.22 deleterious(0) probably_damaging(0.991) TCGA-DD-A73E-01 4 26491839 26491839 G A CCKAR Silent p.P17P 0.42 TCGA-DD-A73E-01 4 47427952 47427952 T C GABRB1 Missense_Mutation p.S448P 0.42 tolerated(0.17) benign(0.319) TCGA-DD-A73E-01 5 127626533 127626533 C A FBN2 Missense_Mutation p.K2112N 0.38 deleterious(0.03) probably_damaging(0.985) TCGA-DD-A73E-01 5 140208380 140208380 T C PCDHA6 Missense_Mutation p.V235A 0.50 tolerated_low_confidence(0.6) benign(0.039) TCGA-DD-A73E-01 5 140347864 140347864 A G PCDHAC2 Missense_Mutation p.T505A 0.42 deleterious(0) benign(0.394) TCGA-DD-A73E-01 5 140537320 140537320 C A PCDHB17 Missense_Mutation p.P582T 0.43 tolerated_low_confidence(0.14) benign(0.002) TCGA-DD-A73E-01 5 140773532 140773532 T C PCDHGA8 Silent p.C384C 0.45 TCGA-DD-A73E-01 5 141008783 141008783 C T HDAC3 Silent p.T189T 0.45 TCGA-DD-A73E-01 5 142680054 142680054 T A NR3C1 Silent p.I582I 0.52 TCGA-DD-A73E-01 5 150946610 150946610 A G FAT2 Missense_Mutation p.L628P 0.19 possibly_damaging(0.588) TCGA-DD-A73E-01 5 170598268 170598268 T G RANBP17 Missense_Mutation p.F615V 0.43 deleterious(0) probably_damaging(0.968) TCGA-DD-A73E-01 5 173316743 173316743 G T CPEB4 Missense_Mutation p.D3Y 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DD-A73E-01 5 178199526 178199526 G C AACSP1 RNA 0.39 TCGA-DD-A73E-01 5 180665320 180665320 C G GNB2L1 Intron 0.47 TCGA-DD-A73E-01 5 1878852 1878852 T C IRX4 Missense_Mutation p.D264G 0.39 deleterious(0.01) benign(0.079) TCGA-DD-A73E-01 5 31323299 31323299 C T CDH6 Silent p.L753L 0.45 TCGA-DD-A73E-01 5 33448802 33448802 G A TARS Nonsense_Mutation p.W98* 0.45 TCGA-DD-A73E-01 5 33892037 33892037 C T ADAMTS12 5'UTR 0.55 TCGA-DD-A73E-01 5 78734957 78734957 C A HOMER1 Missense_Mutation p.D135Y 0.48 deleterious(0.02) benign(0.213) TCGA-DD-A73E-01 6 10784806 10784806 C A MAK Splice_Site p.X439_splice 0.35 TCGA-DD-A73E-01 6 123039083 123039083 A G PKIB Silent p.K55K 0.73 TCGA-DD-A73E-01 6 161469280 161469280 G T MAP3K4 Intron 0.08 TCGA-DD-A73E-01 6 168927046 168927046 G A SMOC2 Missense_Mutation p.E93K 0.77 deleterious(0.01) probably_damaging(0.922) TCGA-DD-A73E-01 6 3113638 3113638 T A RIPK1 3'UTR 0.31 TCGA-DD-A73E-01 6 32122457 32122457 C T PPT2 Missense_Mutation p.P35L 0.31 tolerated(0.67) possibly_damaging(0.851) TCGA-DD-A73E-01 6 36442832 36442832 C G KCTD20 Missense_Mutation p.L143V 0.32 deleterious(0) probably_damaging(0.98) TCGA-DD-A73E-01 6 46660441 46660441 A G TDRD6 Missense_Mutation p.T1526A 0.31 deleterious(0.01) benign(0.425) TCGA-DD-A73E-01 6 82912269 82912269 T - IBTK Frame_Shift_Del p.N902Ifs*14 0.47 TCGA-DD-A73E-01 7 128097805 128097806 - AAATACAAAAGTT HILPDA 3'UTR 0.34 TCGA-DD-A73E-01 7 128486943 128486943 G C FLNC Silent p.G1424G 0.72 TCGA-DD-A73E-01 7 146536896 146536896 A T CNTNAP2 Missense_Mutation p.Q101L 0.61 deleterious(0) probably_damaging(1) TCGA-DD-A73E-01 7 90897410 90897410 G T FZD1 3'UTR 0.67 TCGA-DD-A73E-01 7 92132423 92132423 G T PEX1 Missense_Mutation p.P720T 0.04 deleterious(0) benign(0.11) TCGA-DD-A73E-01 8 113585851 113585851 T A CSMD3 Silent p.L1307L 0.21 TCGA-DD-A73E-01 8 48885442 48885442 G T MCM4 Missense_Mutation p.D652Y 0.08 deleterious(0) probably_damaging(1) TCGA-DD-A73E-01 8 57353832 57353832 T C PENK Silent p.%3D 0.86 TCGA-DD-A73E-01 8 72755807 72755807 C A RP11-383H13.1 Silent p.T57T 0.47 TCGA-DD-A73E-01 9 101798477 101798477 G T COL15A1 Missense_Mutation p.R772L 0.05 tolerated(0.3) benign(0.013) TCGA-DD-A73E-01 9 113341830 113341830 G T SVEP1 5'UTR 0.10 TCGA-DD-A73E-01 9 122011265 122011265 G C BRINP1 Missense_Mutation p.H128D 0.23 deleterious(0) benign(0.067) TCGA-DD-A73E-01 9 137801655 137801655 G A FCN1 Missense_Mutation p.R324W 0.43 deleterious(0) probably_damaging(1) TCGA-DD-A73E-01 9 19786089 19786089 T C SLC24A2 Missense_Mutation p.N259S 0.23 tolerated(0.34) benign(0.173) TCGA-DD-A73E-01 9 21187461 21187461 A G IFNA4 Missense_Mutation p.C24R 0.42 deleterious(0) probably_damaging(0.984) TCGA-DD-A73E-01 9 27330605 27330605 T C MOB3B Missense_Mutation p.T211A 0.48 tolerated(0.1) benign(0.027) TCGA-DD-A73E-01 9 69200270 69200270 C T FOXD4L6 3'UTR 0.30 TCGA-DD-A73E-01 X 102337749 102337749 G T NXF3 Missense_Mutation p.A240E 0.07 tolerated(0.12) benign(0.389) TCGA-DD-A73E-01 X 107975749 107975749 G T IRS4 3'UTR 0.07 TCGA-DD-A73E-01 X 145082629 145082629 G T MIR891B RNA 0.94 TCGA-DD-A73E-01 X 14550361 14550361 G C GLRA2 Missense_Mutation p.R23S 0.88 tolerated_low_confidence(0.24) benign(0.002) TCGA-DD-A73E-01 X 45060068 45060068 C A CXorf36 Nonsense_Mutation p.E2* 0.32 TCGA-DD-A73E-01 X 63405989 63405989 C G AMER1 3'UTR 0.36 TCGA-DD-A73E-01 X 7268307 7268307 G T STS 3'UTR 0.96 TCGA-DD-A73F-01 10 115985937 115985937 T C TDRD1 Missense_Mutation p.L1046P 0.38 deleterious(0) probably_damaging(0.991) TCGA-DD-A73F-01 10 45652326 45652326 A G RP11-445N18.7 RNA 0.47 TCGA-DD-A73F-01 10 48428812 48428812 G A GDF10 Silent p.D358D 0.32 TCGA-DD-A73F-01 10 52751168 52751168 G C PRKG1 Missense_Mutation p.K10N 0.04 tolerated(0.08) benign(0.403) TCGA-DD-A73F-01 10 98325145 98325145 C A TM9SF3 Missense_Mutation p.D113Y 0.30 deleterious(0) probably_damaging(0.928) TCGA-DD-A73F-01 10 99498236 99498236 T C ZFYVE27 Translation_Start_Site p.M1? 0.44 deleterious_low_confidence(0) benign(0.34) TCGA-DD-A73F-01 11 122526750 122526750 G T UBASH3B 5'UTR 0.08 TCGA-DD-A73F-01 11 65116351 65116351 C G DPF2 Missense_Mutation p.R350G 0.05 deleterious(0) probably_damaging(0.999) TCGA-DD-A73F-01 11 74660392 74660392 G A SPCS2 Missense_Mutation p.G21D 0.36 tolerated_low_confidence(0.24) unknown(0) TCGA-DD-A73F-01 12 109677646 109677646 C A ACACB Missense_Mutation p.F1558L 0.18 tolerated(0.14) possibly_damaging(0.842) TCGA-DD-A73F-01 12 113303242 113303242 A T RPH3A Missense_Mutation p.N85I 0.21 deleterious(0) possibly_damaging(0.598) TCGA-DD-A73F-01 12 71003577 71003577 G A PTPRB Intron 0.30 TCGA-DD-A73F-01 13 113795287 113795287 A T F10 Missense_Mutation p.E142V 0.23 tolerated(0.33) benign(0.346) TCGA-DD-A73F-01 13 37271215 37271215 A G SERTM1 3'UTR 0.43 TCGA-DD-A73F-01 13 84454719 84454719 A T SLITRK1 Silent p.G308G 0.50 TCGA-DD-A73F-01 15 34395189 34395189 G T PGBD4 Missense_Mutation p.D153Y 0.06 deleterious(0.03) probably_damaging(0.959) TCGA-DD-A73F-01 15 41388013 41388013 C A INO80 Missense_Mutation p.G86V 0.31 tolerated(0.26) benign(0.243) TCGA-DD-A73F-01 15 42028493 42028493 G A MGA Nonsense_Mutation p.W1344* 0.35 TCGA-DD-A73F-01 15 48500235 48500235 G A SLC12A1 Missense_Mutation p.D107N 0.36 deleterious(0) probably_damaging(0.995) TCGA-DD-A73F-01 15 51757753 51757761 CCAAACTCA - DMXL2 Splice_Site p.X2536_splice 0.19 TCGA-DD-A73F-01 15 55647553 55647553 G A PIGB Missense_Mutation p.E530K 0.07 tolerated(0.09) possibly_damaging(0.802) TCGA-DD-A73F-01 15 59192012 59192012 A G SLTM Silent p.A238A 0.35 TCGA-DD-A73F-01 15 64995346 64995346 C A OAZ2 5'UTR 0.24 TCGA-DD-A73F-01 15 65622666 65622666 C T IGDCC3 Missense_Mutation p.R608H 0.37 deleterious(0.01) benign(0.332) TCGA-DD-A73F-01 16 24802005 24802005 G T TNRC6A Missense_Mutation p.R681L 0.06 tolerated(0.07) benign(0.062) TCGA-DD-A73F-01 16 24920370 24920370 A C SLC5A11 Missense_Mutation p.T535P 0.08 deleterious(0.01) benign(0.323) TCGA-DD-A73F-01 16 49525173 49525173 G A ZNF423 3'UTR 0.29 TCGA-DD-A73F-01 16 50339757 50339757 C T ADCY7 Silent p.R583R 0.37 TCGA-DD-A73F-01 16 66822199 66822199 A C CCDC79 Silent p.V91V 0.32 TCGA-DD-A73F-01 17 4789860 4789860 G A MINK1 Silent p.R296R 0.32 TCGA-DD-A73F-01 17 68171132 68171132 A G KCNJ2 5'UTR 0.35 TCGA-DD-A73F-01 17 79846230 79846230 G T ALYREF Silent p.R223R 0.10 TCGA-DD-A73F-01 17 80195333 80195333 G T SLC16A3 Silent p.V229V 0.05 TCGA-DD-A73F-01 18 8784213 8784213 G A SOGA2 Missense_Mutation p.R368H 0.21 deleterious(0) probably_damaging(1) TCGA-DD-A73F-01 19 10403842 10403842 G T ICAM5 Missense_Mutation p.R462L 0.07 tolerated(0.17) possibly_damaging(0.854) TCGA-DD-A73F-01 19 36050844 36050844 C T ATP4A Missense_Mutation p.A307T 0.30 tolerated(1) possibly_damaging(0.848) TCGA-DD-A73F-01 19 38189778 38189778 C T ZNF607 Silent p.E418E 0.37 TCGA-DD-A73F-01 19 42862946 42862946 G T MEGF8 Missense_Mutation p.R1661L 0.04 tolerated_low_confidence(0.76) benign(0.007) TCGA-DD-A73F-01 19 44278585 44278585 C G KCNN4 Missense_Mutation p.G148R 0.38 tolerated(0.39) benign(0.235) TCGA-DD-A73F-01 19 48602999 48602999 C G PLA2G4C Missense_Mutation p.A136P 0.27 deleterious(0) possibly_damaging(0.712) TCGA-DD-A73F-01 19 50017250 50017250 A T FCGRT Missense_Mutation p.N62I 0.06 deleterious(0) probably_damaging(0.929) TCGA-DD-A73F-01 19 52934700 52934700 T A ZNF534 5'UTR 0.27 TCGA-DD-A73F-01 19 56369797 56369797 C T NLRP4 Silent p.I346I 0.42 TCGA-DD-A73F-01 19 6732044 6732044 G T GPR108 Silent p.P416P 0.06 TCGA-DD-A73F-01 19 9074914 9074914 A G MUC16 Missense_Mutation p.S4178P 0.35 unknown(0) TCGA-DD-A73F-01 1 12785194 12785194 G A AADACL3 Missense_Mutation p.R95H 0.28 tolerated(0.06) possibly_damaging(0.467) TCGA-DD-A73F-01 1 147380859 147380859 C T GJA8 Silent p.S259S 0.34 TCGA-DD-A73F-01 1 204394000 204394000 G A PIK3C2B Nonsense_Mutation p.R1629* 0.42 TCGA-DD-A73F-01 1 20811831 20811831 G T CAMK2N1 Silent p.P14P 0.31 TCGA-DD-A73F-01 1 247978151 247978151 A G OR14A16 Missense_Mutation p.I294T 0.22 deleterious(0) benign(0.119) TCGA-DD-A73F-01 1 5923098 5923098 G A NPHP4 3'UTR 0.38 TCGA-DD-A73F-01 1 62916161 62916161 A C USP1 Missense_Mutation p.K623Q 0.33 tolerated(0.14) benign(0.093) TCGA-DD-A73F-01 1 68897225 68897225 G A RPE65 Missense_Mutation p.A391V 0.33 deleterious(0) possibly_damaging(0.684) TCGA-DD-A73F-01 1 7723459 7723459 C T CAMTA1 Silent p.R284R 0.31 TCGA-DD-A73F-01 1 976939 976939 G T AGRN Missense_Mutation p.R345L 0.13 tolerated(0.32) possibly_damaging(0.569) TCGA-DD-A73F-01 20 54824818 54824818 C T MC3R Missense_Mutation p.R307C 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-DD-A73F-01 20 61981053 61981053 G A CHRNA4 Silent p.G570G 0.47 TCGA-DD-A73F-01 21 10971325 10971325 G T TPTE Missense_Mutation p.A11E 0.20 tolerated_low_confidence(0.11) benign(0) TCGA-DD-A73F-01 21 31744148 31744148 T C KRTAP13-2 Silent p.R128R 0.35 TCGA-DD-A73F-01 21 45565486 45565486 G C C21orf33 3'UTR 0.31 TCGA-DD-A73F-01 22 16282259 16282259 C T POTEH Silent p.P269P 0.22 TCGA-DD-A73F-01 22 18905965 18905965 G T PRODH Missense_Mutation p.R431S 0.06 deleterious(0.02) possibly_damaging(0.906) TCGA-DD-A73F-01 22 21403118 21403118 C T AC002472.13 Intron 0.41 TCGA-DD-A73F-01 22 37893159 37893159 C T CARD10 Missense_Mutation p.R605Q 0.54 tolerated(0.33) benign(0.086) TCGA-DD-A73F-01 22 41631315 41631315 G T CHADL Missense_Mutation p.A699D 0.10 deleterious(0) probably_damaging(0.967) TCGA-DD-A73F-01 22 41895734 41895734 C G ACO2 Missense_Mutation p.A14G 0.35 tolerated_low_confidence(0.12) benign(0.022) TCGA-DD-A73F-01 2 160840493 160840493 G T PLA2R1 Missense_Mutation p.A710D 0.34 tolerated(0.12) possibly_damaging(0.876) TCGA-DD-A73F-01 2 171570035 171570035 G A LINC01124 3'UTR 0.27 TCGA-DD-A73F-01 2 173782599 173782599 G T RAPGEF4 Missense_Mutation p.D172Y 0.06 tolerated(0.06) possibly_damaging(0.838) TCGA-DD-A73F-01 2 1926429 1926429 G A MYT1L Missense_Mutation p.T371M 0.35 tolerated_low_confidence(0.16) benign(0.209) TCGA-DD-A73F-01 2 203019452 203019452 T C AC079354.1 3'UTR 0.05 TCGA-DD-A73F-01 2 210696272 210696272 G T UNC80 Missense_Mutation p.R911L 0.31 probably_damaging(0.986) TCGA-DD-A73F-01 2 39009103 39009103 G T GEMIN6 3'UTR 0.09 TCGA-DD-A73F-01 2 39481600 39481600 T A MAP4K3 Missense_Mutation p.R844S 0.37 tolerated(0.12) benign(0.257) TCGA-DD-A73F-01 2 44055288 44055288 G T ABCG5 Intron 0.09 TCGA-DD-A73F-01 2 73799982 73799982 G A ALMS1 Missense_Mutation p.V3659M 0.25 benign(0.106) TCGA-DD-A73F-01 2 74754660 74754660 A T AUP1 Missense_Mutation p.L300Q 0.05 deleterious(0) probably_damaging(0.939) TCGA-DD-A73F-01 3 138289885 138289885 T C CEP70 Missense_Mutation p.Q92R 0.28 tolerated(0.76) benign(0.234) TCGA-DD-A73F-01 3 138669208 138669208 G A C3orf72 Missense_Mutation p.A108T 0.34 deleterious_low_confidence(0.04) probably_damaging(0.913) TCGA-DD-A73F-01 3 192444996 192444996 G A RNU1-20P 3'Flank 0.31 TCGA-DD-A73F-01 3 42777365 42777383 CTCAGGCTGCCTAGGATCT - CCDC13 Frame_Shift_Del p.E396Vfs*18 0.14 TCGA-DD-A73F-01 4 115773896 115773896 C G NDST4 Missense_Mutation p.G601R 0.29 deleterious(0) probably_damaging(1) TCGA-DD-A73F-01 4 48038198 48038198 G T NIPAL1 3'UTR 0.34 TCGA-DD-A73F-01 4 79229242 79229242 T C FRAS1 Silent p.G519G 0.29 TCGA-DD-A73F-01 4 87701601 87701601 G A PTPN13 Missense_Mutation p.A1985T 0.39 tolerated(0.45) benign(0.001) TCGA-DD-A73F-01 4 90035761 90035761 T C TIGD2 3'UTR 0.44 TCGA-DD-A73F-01 5 125944167 125944167 C A PHAX Silent p.L274L 0.26 TCGA-DD-A73F-01 5 128364118 128364118 A T SLC27A6 Missense_Mutation p.Y512F 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-DD-A73F-01 5 140255085 140255085 G C PCDHA12 Missense_Mutation p.G10R 0.36 tolerated_low_confidence(0.07) benign(0.021) TCGA-DD-A73F-01 5 147862637 147862637 G T HTR4 3'UTR 0.47 TCGA-DD-A73F-01 5 158158157 158158157 C G EBF1 Missense_Mutation p.E349Q 0.35 deleterious(0.03) possibly_damaging(0.797) TCGA-DD-A73F-01 5 3599546 3599546 A G IRX1 Missense_Mutation p.M162V 0.37 deleterious(0) possibly_damaging(0.59) TCGA-DD-A73F-01 5 36253830 36253830 C A RANBP3L Missense_Mutation p.K387N 0.27 tolerated(0.46) benign(0.222) TCGA-DD-A73F-01 5 96350727 96350727 C T LNPEP Silent p.A768A 0.08 TCGA-DD-A73F-01 6 31514353 31514353 G T ATP6V1G2 5'UTR 0.09 TCGA-DD-A73F-01 6 32117487 32117487 C T PRRT1 Missense_Mutation p.G191R 0.38 tolerated(0.36) benign(0.002) TCGA-DD-A73F-01 6 44197695 44197695 G T SLC29A1 Silent p.V122V 0.33 TCGA-DD-A73F-01 6 65301374 65301374 A G EYS Silent p.S1462S 0.27 TCGA-DD-A73F-01 6 76124503 76124503 A T FILIP1 Silent p.S62S 0.28 TCGA-DD-A73F-01 7 12610490 12610490 G A SCIN Silent p.K26K 0.22 TCGA-DD-A73F-01 7 138761070 138761070 C T ZC3HAV1 Silent p.E553E 0.36 TCGA-DD-A73F-01 7 139653169 139653169 G T TBXAS1 Missense_Mutation p.M198I 0.09 deleterious(0) possibly_damaging(0.706) TCGA-DD-A73F-01 7 139719976 139719976 G A TBXAS1 3'UTR 0.24 TCGA-DD-A73F-01 7 139719977 139719977 A T TBXAS1 3'UTR 0.24 TCGA-DD-A73F-01 7 141490117 141490117 G T TAS2R5 5'UTR 0.33 TCGA-DD-A73F-01 7 21521737 21521737 T C SP4 Silent p.H701H 0.34 TCGA-DD-A73F-01 7 28995704 28995704 C T AC005013.5 5'Flank 0.29 TCGA-DD-A73F-01 7 86986879 86986879 T C CROT Silent p.L58L 0.27 TCGA-DD-A73F-01 7 930603 930603 T G GET4 Missense_Mutation p.S169A 0.30 deleterious(0.02) possibly_damaging(0.479) TCGA-DD-A73F-01 8 128428642 128428642 G A POU5F1B Silent p.K177K 0.28 TCGA-DD-A73F-01 8 139164944 139164944 G T FAM135B Missense_Mutation p.L592I 0.07 tolerated(0.51) benign(0.004) TCGA-DD-A73F-01 8 53084937 53084937 C A ST18 Missense_Mutation p.D162Y 0.29 deleterious(0) possibly_damaging(0.848) TCGA-DD-A73F-01 9 116045492 116045492 G T PRPF4 Splice_Site p.X188_splice 0.05 TCGA-DD-A73F-01 9 131515868 131515868 C T ZER1 Silent p.E107E 0.26 TCGA-DD-A73F-01 9 43625397 43625397 C T SPATA31A6 Missense_Mutation p.R1097K 0.29 deleterious(0.03) benign(0.075) TCGA-DD-A73F-01 9 5534923 5534923 G T PDCD1LG2 Missense_Mutation p.E78D 0.05 tolerated(0.25) benign(0.013) TCGA-DD-A73F-01 X 107402853 107402853 G T COL4A6 Missense_Mutation p.P1552T 0.41 benign(0.005) TCGA-DD-A73F-01 X 136113472 136113472 G T GPR101 Missense_Mutation p.T121N 0.51 tolerated(0.12) probably_damaging(0.996) TCGA-DD-A73F-01 X 153556013 153556013 C T TKTL1 Missense_Mutation p.A493V 0.28 deleterious(0.01) possibly_damaging(0.6) TCGA-DD-A73F-01 X 15849482 15849483 AG - AP1S2 Intron 0.19 TCGA-DD-A73F-01 X 40498275 40498275 T G CXorf38 Missense_Mutation p.K153Q 0.35 tolerated(0.09) possibly_damaging(0.628) TCGA-DD-A73F-01 X 45011086 45011086 C T CXorf36 Silent p.Q371Q 0.35 TCGA-DD-A73F-01 X 53577955 53577955 G T HUWE1 Silent p.R3098R 0.04 TCGA-DD-A73F-01 X 53578097 53578097 G T HUWE1 Silent p.A3050A 0.07 TCGA-DD-A73F-01 X 79698375 79698375 C T FAM46D Missense_Mutation p.P113S 0.33 deleterious(0) probably_damaging(1) TCGA-DD-A73G-01 10 1149723 1149723 G T WDR37 Missense_Mutation p.R303L 0.20 deleterious(0) benign(0.212) TCGA-DD-A73G-01 10 135140487 135140487 G T CALY Silent p.T85T 0.38 TCGA-DD-A73G-01 10 18957556 18957556 G A ARL5B Missense_Mutation p.G69S 0.23 deleterious(0) probably_damaging(0.984) TCGA-DD-A73G-01 10 5139644 5139644 C A AKR1C3 Silent p.R91R 0.17 TCGA-DD-A73G-01 10 5772478 5772478 C G FAM208B Missense_Mutation p.D172E 0.19 tolerated(0.21) benign(0.143) TCGA-DD-A73G-01 10 71166949 71166949 C G TACR2 Missense_Mutation p.E277Q 0.31 tolerated(0.4) benign(0.026) TCGA-DD-A73G-01 10 96709012 96709012 A G CYP2C9 Missense_Mutation p.I264V 0.20 deleterious(0.04) benign(0.393) TCGA-DD-A73G-01 11 105881627 105881627 T A MSANTD4 Missense_Mutation p.R6S 0.10 deleterious(0) probably_damaging(0.994) TCGA-DD-A73G-01 11 10824597 10824597 T C EIF4G2 Missense_Mutation p.I326V 0.08 tolerated(0.22) benign(0.007) TCGA-DD-A73G-01 11 17191175 17191175 A G PIK3C2A Silent p.A38A 0.17 TCGA-DD-A73G-01 11 290808 290808 C G ATHL1 Missense_Mutation p.L201V 0.17 tolerated(0.07) benign(0.32) TCGA-DD-A73G-01 11 47364195 47364195 C T MYBPC3 Missense_Mutation p.E520K 0.24 deleterious(0.02) possibly_damaging(0.7) TCGA-DD-A73G-01 11 59837694 59837694 C T MS4A3 Silent p.P211P 0.20 TCGA-DD-A73G-01 11 606503 606503 C T PHRF1 Silent p.L505L 0.58 TCGA-DD-A73G-01 12 109535499 109535499 G A UNG Silent p.K5K 0.20 TCGA-DD-A73G-01 12 113444239 113444239 C A OAS2 Missense_Mutation p.T497K 0.18 tolerated(0.77) benign(0.015) TCGA-DD-A73G-01 12 40951317 40951317 C G MUC19 Intron 0.20 TCGA-DD-A73G-01 12 43837682 43837682 A G ADAMTS20 Silent p.Y734Y 0.18 TCGA-DD-A73G-01 12 57573867 57573867 G A LRP1 Missense_Mutation p.A1727T 0.16 probably_damaging(0.958) TCGA-DD-A73G-01 12 72022736 72022736 C T ZFC3H1 Missense_Mutation p.S1303N 0.13 tolerated(0.25) possibly_damaging(0.728) TCGA-DD-A73G-01 12 75672708 75672708 C T CAPS2 Intron 0.11 TCGA-DD-A73G-01 13 72049304 72049304 G A DACH1 Silent p.G686G 0.16 TCGA-DD-A73G-01 13 76397962 76397962 T G LMO7 Missense_Mutation p.S735A 0.24 tolerated(0.58) benign(0.15) TCGA-DD-A73G-01 13 96409903 96409903 A G DNAJC3 Silent p.K133K 0.21 TCGA-DD-A73G-01 14 102676045 102676045 T C WDR20 Missense_Mutation p.L544P 0.22 deleterious(0.03) benign(0.284) TCGA-DD-A73G-01 14 106815806 106815806 G T IGHV3-33 Silent p.I89I 0.12 TCGA-DD-A73G-01 14 23842468 23842468 C T IL25 Silent p.T47T 0.25 TCGA-DD-A73G-01 14 24545726 24545726 C G CPNE6 Missense_Mutation p.D375E 0.27 tolerated(1) benign(0.02) TCGA-DD-A73G-01 14 31819906 31819906 T C HEATR5A Missense_Mutation p.Q517R 0.27 deleterious(0.02) possibly_damaging(0.786) TCGA-DD-A73G-01 14 65208636 65208636 C G PLEKHG3 Missense_Mutation p.P745A 0.20 tolerated(1) benign(0.001) TCGA-DD-A73G-01 14 65208637 65208637 C T PLEKHG3 Missense_Mutation p.P745L 0.20 tolerated(0.07) benign(0.098) TCGA-DD-A73G-01 14 69262491 69262491 T A ZFP36L1 5'Flank 0.25 TCGA-DD-A73G-01 14 96986492 96986492 G A PAPOLA Missense_Mutation p.V37I 0.30 tolerated(0.4) benign(0.002) TCGA-DD-A73G-01 15 41247820 41247820 G A CHAC1 Missense_Mutation p.G215S 0.47 deleterious(0) probably_damaging(1) TCGA-DD-A73G-01 15 45400255 45400257 TGT - DUOX2 In_Frame_Del p.N521del 0.35 TCGA-DD-A73G-01 15 48495286 48495286 A C CTXN2 3'UTR 0.21 TCGA-DD-A73G-01 15 50884667 50884667 C T TRPM7 Silent p.S1255S 0.21 TCGA-DD-A73G-01 15 83328618 83328618 C T AP3B2 Missense_Mutation p.C1026Y 0.22 deleterious(0.04) benign(0.384) TCGA-DD-A73G-01 15 91478859 91478859 A C UNC45A Missense_Mutation p.Q46P 0.16 deleterious(0.01) benign(0.346) TCGA-DD-A73G-01 15 92981799 92981799 C A ST8SIA2 Missense_Mutation p.S169R 0.33 probably_damaging(0.999) TCGA-DD-A73G-01 15 99828120 99828120 C T LRRC28 Nonsense_Mutation p.R117* 0.16 TCGA-DD-A73G-01 16 11846585 11846585 T G ZC3H7A Missense_Mutation p.E889A 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-DD-A73G-01 16 1575967 1575967 G T IFT140 Missense_Mutation p.R897S 0.26 deleterious(0.03) possibly_damaging(0.882) TCGA-DD-A73G-01 16 15857692 15857692 C T MYH11 Missense_Mutation p.E371K 0.45 probably_damaging(0.996) TCGA-DD-A73G-01 16 23079793 23079793 G A USP31 Silent p.I1211I 0.09 TCGA-DD-A73G-01 16 68266322 68266322 G T ESRP2 Missense_Mutation p.D302E 0.21 tolerated(0.07) probably_damaging(0.935) TCGA-DD-A73G-01 16 89831471 89831471 G C FANCA Missense_Mutation p.Q869E 0.11 deleterious(0.01) benign(0.042) TCGA-DD-A73G-01 17 32583924 32583924 T C CCL2 3'UTR 0.31 TCGA-DD-A73G-01 17 3417893 3417893 G A TRPV3 Nonsense_Mutation p.R758* 0.10 TCGA-DD-A73G-01 17 38922867 38922867 A G KRT26 Missense_Mutation p.I436T 0.06 tolerated(0.39) benign(0.023) TCGA-DD-A73G-01 17 45916030 45916030 G C SCRN2 Missense_Mutation p.L269V 0.26 deleterious(0) probably_damaging(0.993) TCGA-DD-A73G-01 17 73539501 73539501 A G LLGL2 5'UTR 0.06 TCGA-DD-A73G-01 18 72775252 72775252 C T ZNF407 Missense_Mutation p.P1859S 0.23 tolerated(0.96) benign(0.004) TCGA-DD-A73G-01 18 74622651 74622651 C G ZNF236 Missense_Mutation p.Q895E 0.08 tolerated(0.14) benign(0.044) TCGA-DD-A73G-01 19 17476642 17476642 C T PLVAP Missense_Mutation p.R211H 0.20 tolerated(0.06) benign(0.352) TCGA-DD-A73G-01 19 2096977 2096977 G C IZUMO4 Silent p.T11T 0.17 TCGA-DD-A73G-01 19 21558044 21558044 C T ZNF738 Missense_Mutation p.P34L 0.19 tolerated(0.42) benign(0.07) TCGA-DD-A73G-01 19 2399148 2399148 C T TMPRSS9 Silent p.I123I 0.09 TCGA-DD-A73G-01 19 36352846 36352846 C A KIRREL2 Missense_Mutation p.S477Y 0.13 deleterious(0) benign(0.165) TCGA-DD-A73G-01 19 46136177 46136177 T G EML2 Missense_Mutation p.H352P 0.14 deleterious(0.01) possibly_damaging(0.789) TCGA-DD-A73G-01 19 55871106 55871106 G T FAM71E2 Missense_Mutation p.S377Y 0.12 deleterious(0.02) probably_damaging(0.946) TCGA-DD-A73G-01 19 56274316 56274316 G T RFPL4A Missense_Mutation p.L213F 0.09 deleterious(0.04) possibly_damaging(0.739) TCGA-DD-A73G-01 1 150529206 150529206 G A ADAMTSL4 Silent p.R562R 0.08 TCGA-DD-A73G-01 1 152975594 152975594 T G SPRR3 Missense_Mutation p.F33C 0.33 tolerated(0.46) benign(0.025) TCGA-DD-A73G-01 1 158390017 158390017 T A OR10K2 Missense_Mutation p.I214F 0.15 deleterious(0) probably_damaging(1) TCGA-DD-A73G-01 1 16096974 16096974 C G FBLIM1 Nonsense_Mutation p.Y204* 0.27 TCGA-DD-A73G-01 1 172356431 172356431 C T DNM3 Silent p.I739I 0.08 TCGA-DD-A73G-01 1 207288822 207288822 A G C4BPA Silent p.L130L 0.24 TCGA-DD-A73G-01 1 207871016 207871016 G C CR1L Missense_Mutation p.R344T 0.14 tolerated(0.4) benign(0.012) TCGA-DD-A73G-01 1 216363610 216363610 C A USH2A Missense_Mutation p.G1451C 0.21 probably_damaging(0.997) TCGA-DD-A73G-01 1 226829808 226829808 C T ITPKB Silent p.E755E 0.11 TCGA-DD-A73G-01 1 232607246 232607246 T A SIPA1L2 Missense_Mutation p.D705V 0.18 deleterious(0) probably_damaging(1) TCGA-DD-A73G-01 1 246021833 246021833 G A SMYD3 Silent p.A347A 0.11 TCGA-DD-A73G-01 1 55549487 55549488 - A USP24 Frame_Shift_Ins p.C2281Lfs*18 0.30 TCGA-DD-A73G-01 1 64038167 64038167 A G EFCAB7 Missense_Mutation p.I624V 0.16 tolerated(1) benign(0) TCGA-DD-A73G-01 1 65614035 65614035 C T AK4 5'UTR 0.19 TCGA-DD-A73G-01 20 35431376 35431376 C T SOGA1 Silent p.Q1074Q 0.22 TCGA-DD-A73G-01 20 35663859 35663859 G A RBL1 Silent p.T652T 0.14 TCGA-DD-A73G-01 20 39990391 39990391 G T EMILIN3 Missense_Mutation p.S606R 0.09 deleterious(0.01) possibly_damaging(0.545) TCGA-DD-A73G-01 20 43378872 43378872 G A KCNK15 Missense_Mutation p.G129D 0.15 deleterious(0) probably_damaging(1) TCGA-DD-A73G-01 20 44576125 44576125 G A PCIF1 Intron 0.10 TCGA-DD-A73G-01 20 50782459 50782459 C T ZFP64 Missense_Mutation p.R131H 0.09 tolerated(0.06) probably_damaging(0.984) TCGA-DD-A73G-01 21 47666686 47666686 T A MCM3AP Missense_Mutation p.M1469L 0.28 tolerated(0.27) benign(0) TCGA-DD-A73G-01 22 21066826 21066826 T C PI4KA Missense_Mutation p.Y1917C 0.28 deleterious(0) probably_damaging(0.992) TCGA-DD-A73G-01 22 22869868 22869868 A G ZNF280A Silent p.D29D 0.16 TCGA-DD-A73G-01 22 25024304 25024304 G C GGT1 Silent p.L504L 0.16 TCGA-DD-A73G-01 22 27026303 27026303 G A CRYBA4 Splice_Site p.X148_splice 0.14 TCGA-DD-A73G-01 22 50905841 50905841 C T SBF1 Missense_Mutation p.G159S 0.13 tolerated(0.71) probably_damaging(0.981) TCGA-DD-A73G-01 2 108499228 108499228 T C RGPD4 Missense_Mutation p.F1722S 0.21 deleterious_low_confidence(0) possibly_damaging(0.637) TCGA-DD-A73G-01 2 114195345 114195345 G A CBWD2 5'UTR 0.20 TCGA-DD-A73G-01 2 127806198 127806198 C T BIN1 Nonsense_Mutation p.W562* 0.26 TCGA-DD-A73G-01 2 128262855 128262855 C A IWS1 Missense_Mutation p.M208I 0.21 tolerated_low_confidence(0.22) benign(0) TCGA-DD-A73G-01 2 131976218 131976218 C A POTEE Silent p.G81G 0.20 TCGA-DD-A73G-01 2 176945497 176945497 C T EVX2 Missense_Mutation p.D257N 0.40 deleterious(0.01) possibly_damaging(0.548) TCGA-DD-A73G-01 2 179410949 179410949 G A TTN Silent p.V31703V 0.15 TCGA-DD-A73G-01 2 179431181 179431181 T C TTN Missense_Mutation p.K26560E 0.21 TCGA-DD-A73G-01 2 180307996 180307996 A G ZNF385B Missense_Mutation p.I466T 0.14 deleterious(0) probably_damaging(0.982) TCGA-DD-A73G-01 2 180308145 180308145 G C ZNF385B Missense_Mutation p.F416L 0.22 tolerated(0.21) benign(0.047) TCGA-DD-A73G-01 2 191067986 191067986 C T C2orf88 3'UTR 0.04 TCGA-DD-A73G-01 2 192011406 192011406 C A STAT4 Missense_Mutation p.G69V 0.13 deleterious(0.02) possibly_damaging(0.774) TCGA-DD-A73G-01 2 20454712 20454712 G A PUM2 Silent p.L928L 0.23 TCGA-DD-A73G-01 2 219254739 219254739 C T SLC11A1 Silent p.T314T 0.26 TCGA-DD-A73G-01 2 27559284 27559284 G A GTF3C2 Missense_Mutation p.S379L 0.14 deleterious(0) probably_damaging(0.951) TCGA-DD-A73G-01 2 5834087 5834087 G T SOX11 Nonsense_Mutation p.E412* 0.26 TCGA-DD-A73G-01 2 68544207 68544207 A G CNRIP1 Intron 0.20 TCGA-DD-A73G-01 2 97370374 97370374 G T LMAN2L 3'Flank 0.20 TCGA-DD-A73G-01 3 100328724 100328724 C A GPR128 Missense_Mutation p.N8K 0.16 deleterious(0.03) possibly_damaging(0.466) TCGA-DD-A73G-01 3 101540508 101540508 C T NXPE3 Missense_Mutation p.R464C 0.19 deleterious(0) probably_damaging(0.999) TCGA-DD-A73G-01 3 120959330 120959330 C G STXBP5L Missense_Mutation p.T459R 0.17 deleterious(0) probably_damaging(0.982) TCGA-DD-A73G-01 3 133921638 133921638 G C RYK Missense_Mutation p.L240V 0.18 tolerated(0.31) probably_damaging(0.998) TCGA-DD-A73G-01 3 38739071 38739071 G T SCN10A Silent p.P1880P 0.12 TCGA-DD-A73G-01 3 46006599 46006599 T C FYCO1 Missense_Mutation p.K1026E 0.22 tolerated(1) benign(0.001) TCGA-DD-A73G-01 3 52441263 52441263 G C BAP1 Missense_Mutation p.H169Q 0.58 deleterious(0) probably_damaging(1) TCGA-DD-A73G-01 4 103225548 103225548 A T SLC39A8 Missense_Mutation p.C256S 0.22 tolerated(0.64) benign(0.309) TCGA-DD-A73G-01 4 37962607 37962607 G T PTTG2 Missense_Mutation p.K184N 0.21 tolerated(0.19) possibly_damaging(0.607) TCGA-DD-A73G-01 4 75971416 75971416 T C PARM1 Missense_Mutation p.S298P 0.31 deleterious(0) probably_damaging(0.999) TCGA-DD-A73G-01 4 780250 780250 A G CPLX1 3'UTR 0.05 TCGA-DD-A73G-01 4 88534393 88534393 G T DSPP Missense_Mutation p.S352I 0.25 benign(0.219) TCGA-DD-A73G-01 5 126993773 126993773 C G CTXN3 3'UTR 0.15 TCGA-DD-A73G-01 5 133473769 133473769 C A TCF7 Missense_Mutation p.P154H 0.19 deleterious(0.04) possibly_damaging(0.563) TCGA-DD-A73G-01 5 137780127 137780127 A C REEP2 Missense_Mutation p.K69T 0.16 deleterious(0) probably_damaging(1) TCGA-DD-A73G-01 5 13866359 13866359 C T DNAH5 Silent p.Q1362Q 0.13 TCGA-DD-A73G-01 5 140221574 140221574 C A PCDHA8 Missense_Mutation p.T223K 0.06 deleterious_low_confidence(0.01) benign(0.163) TCGA-DD-A73G-01 5 26881302 26881302 C - CDH9 Frame_Shift_Del p.P772Lfs*23 0.21 TCGA-DD-A73G-01 5 79734325 79734325 T C ZFYVE16 Silent p.N607N 0.12 TCGA-DD-A73G-01 5 81573513 81573514 - T RPS23 Frame_Shift_Ins p.V55Sfs*4 0.16 TCGA-DD-A73G-01 5 94988816 94988816 T G RFESD Intron 0.10 TCGA-DD-A73G-01 6 144875994 144875994 C A UTRN Silent p.R2367R 0.23 TCGA-DD-A73G-01 6 30557649 30557649 C T ABCF1 Silent p.L711L 0.16 TCGA-DD-A73G-01 6 31625962 31625962 T G APOM 3'UTR 0.19 TCGA-DD-A73G-01 6 34213350 34213350 C T HMGA1 3'UTR 0.16 TCGA-DD-A73G-01 6 39286882 39286882 C T KCNK16 Missense_Mutation p.V81M 0.12 deleterious(0) probably_damaging(0.974) TCGA-DD-A73G-01 6 56341127 56341127 G A DST Silent p.A4605A 0.22 TCGA-DD-A73G-01 6 74502505 74502505 C G CD109 Missense_Mutation p.A953G 0.22 deleterious(0) possibly_damaging(0.847) TCGA-DD-A73G-01 6 89554193 89554193 T C RNGTT Missense_Mutation p.I384M 0.30 deleterious(0) probably_damaging(0.956) TCGA-DD-A73G-01 7 11209071 11209071 A G PHF14 Missense_Mutation p.N649S 0.04 tolerated_low_confidence(0.39) benign(0.005) TCGA-DD-A73G-01 7 151849960 151849960 G A KMT2C Missense_Mutation p.P4119L 0.19 possibly_damaging(0.881) TCGA-DD-A73G-01 7 6187455 6187455 C T USP42 Missense_Mutation p.R440W 0.05 deleterious(0) probably_damaging(1) TCGA-DD-A73G-01 7 66482951 66482951 G A TYW1 Missense_Mutation p.D228N 0.13 tolerated(0.08) possibly_damaging(0.449) TCGA-DD-A73G-01 7 99045802 99045802 G T CPSF4 Missense_Mutation p.W71C 0.35 deleterious(0) probably_damaging(1) TCGA-DD-A73G-01 8 124266184 124266185 - T ZHX1 Frame_Shift_Ins p.T668Nfs*3 0.12 TCGA-DD-A73G-01 8 30702749 30702749 G A TEX15 Missense_Mutation p.A1262V 0.36 tolerated(1) benign(0) TCGA-DD-A73G-01 8 87549817 87549817 C A CPNE3 Nonsense_Mutation p.Y162* 0.13 TCGA-DD-A73G-01 9 123768307 123768307 T A C5 Nonsense_Mutation p.K818* 0.18 TCGA-DD-A73G-01 9 125273953 125273953 C G OR1J2 Missense_Mutation p.S291R 0.22 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-DD-A73G-01 9 125315781 125315781 T C OR1N2 Silent p.Y111Y 0.31 TCGA-DD-A73G-01 9 35682880 35682880 G A TPM2 Intron 0.29 TCGA-DD-A73G-01 9 6241766 6241766 C T IL33 Silent p.A24A 0.47 TCGA-DD-A73G-01 9 79520995 79520995 G A PRUNE2 5'UTR 0.22 TCGA-DD-A73G-01 X 10085608 10085608 C T WWC3 Silent p.A503A 0.19 TCGA-DD-A73G-01 X 106841264 106841264 C A FRMPD3 Silent p.R752R 0.23 TCGA-DD-A73G-01 X 123680738 123680738 C T TENM1 Silent p.V879V 0.14 TCGA-DD-A73G-01 X 129338887 129338887 C A ZNF280C 3'UTR 0.26 TCGA-DD-A73G-01 X 12937742 12937742 G A TLR8 Missense_Mutation p.G195R 0.15 deleterious(0.01) possibly_damaging(0.495) TCGA-DD-A73G-01 X 136112567 136112567 C T GPR101 Missense_Mutation p.V423M 0.29 tolerated(0.18) possibly_damaging(0.868) TCGA-DD-A73G-01 X 148798396 148798396 T A MAGEA11 Missense_Mutation p.L417Q 0.14 tolerated(0.36) benign(0.045) TCGA-DD-A73G-01 X 48631828 48631828 G A GLOD5 Missense_Mutation p.V154M 0.09 deleterious(0.01) possibly_damaging(0.474) TCGA-DD-A73G-01 X 84562234 84562234 C A POF1B Missense_Mutation p.D367Y 0.15 deleterious(0) possibly_damaging(0.718) TCGA-DD-AA3A-01 10 120354129 120354142 GGCGCACGTCGTGC - PRLHR Frame_Shift_Del p.H206Lfs*196 0.29 TCGA-DD-AA3A-01 10 25887038 25887038 C T GPR158 Missense_Mutation p.T828M 0.39 tolerated(0.13) benign(0.018) TCGA-DD-AA3A-01 10 88459242 88459242 C A LDB3 Intron 0.32 TCGA-DD-AA3A-01 10 89265290 89265290 G T MINPP1 Missense_Mutation p.L206F 0.40 tolerated(0.16) possibly_damaging(0.532) TCGA-DD-AA3A-01 11 102395766 102395766 G A MMP7 Missense_Mutation p.P172S 0.35 deleterious(0.02) possibly_damaging(0.8) TCGA-DD-AA3A-01 11 117097882 117097882 G A PCSK7 Missense_Mutation p.R254C 0.28 deleterious(0) probably_damaging(0.954) TCGA-DD-AA3A-01 11 134179570 134179570 G A GLB1L3 Missense_Mutation p.V338I 0.42 tolerated(0.12) benign(0.021) TCGA-DD-AA3A-01 11 66472298 66472298 G A SPTBN2 Silent p.L817L 0.41 TCGA-DD-AA3A-01 11 67926442 67926442 A G SUV420H1 Silent p.H457H 0.45 TCGA-DD-AA3A-01 11 870164 870179 CTGCAAGACAAAGGGA - CHID1 Splice_Site p.X372_splice 0.18 TCGA-DD-AA3A-01 12 102547704 102547704 C A PARPBP Missense_Mutation p.L149I 0.37 tolerated(0.34) benign(0.099) TCGA-DD-AA3A-01 12 109288134 109288134 G T DAO Missense_Mutation p.Q201H 0.42 deleterious(0) possibly_damaging(0.898) TCGA-DD-AA3A-01 12 123789129 123789129 C G SBNO1 Missense_Mutation p.K1256N 0.35 deleterious(0) possibly_damaging(0.885) TCGA-DD-AA3A-01 12 4829970 4829970 A T GALNT8 Missense_Mutation p.R43W 0.40 deleterious(0) benign(0.145) TCGA-DD-AA3A-01 12 50190546 50190546 G A NCKAP5L Missense_Mutation p.A366V 0.29 tolerated_low_confidence(0.13) benign(0.09) TCGA-DD-AA3A-01 12 56566407 56566407 G A SMARCC2 Missense_Mutation p.R578C 0.18 deleterious(0.03) possibly_damaging(0.689) TCGA-DD-AA3A-01 12 96394788 96394788 C T LTA4H Silent p.G605G 0.08 TCGA-DD-AA3A-01 15 41313209 41313209 G C INO80 Missense_Mutation p.P1055A 0.44 tolerated(0.28) probably_damaging(0.996) TCGA-DD-AA3A-01 15 58891888 58891888 A C ADAM10 Silent p.A687A 0.38 TCGA-DD-AA3A-01 16 11770176 11770176 C T SNN Silent p.H87H 0.39 TCGA-DD-AA3A-01 16 2653605 2653605 G A PDPK1 3'Flank 0.33 TCGA-DD-AA3A-01 16 58701205 58701205 G A SLC38A7 3'UTR 0.10 TCGA-DD-AA3A-01 17 39506775 39506775 G A KRT33A Missense_Mutation p.A82V 0.38 deleterious(0.03) possibly_damaging(0.618) TCGA-DD-AA3A-01 17 47866157 47866157 C T KAT7 5'UTR 0.45 TCGA-DD-AA3A-01 17 62750750 62750750 C A hsa-mir-6080 RNA 0.45 TCGA-DD-AA3A-01 17 74878443 74878443 G A MGAT5B Intron 0.38 TCGA-DD-AA3A-01 18 29039050 29039050 C T DSG3 Silent p.L143L 0.36 TCGA-DD-AA3A-01 18 45567333 45567333 C T ZBTB7C Missense_Mutation p.R49H 0.36 deleterious(0) probably_damaging(0.984) TCGA-DD-AA3A-01 18 712566 712566 G - ENOSF1 5'Flank 0.27 TCGA-DD-AA3A-01 19 17100489 17100489 G T CPAMD8 Nonsense_Mutation p.C500* 0.52 TCGA-DD-AA3A-01 19 39663569 39663569 G T PAK4 Silent p.R72R 0.41 TCGA-DD-AA3A-01 19 39805727 39805729 CTC GT LRFN1 Frame_Shift_Del p.R83Hfs*6 0.29 TCGA-DD-AA3A-01 1 109007837 109007837 G A NBPF6 Missense_Mutation p.G484E 0.59 tolerated(0.07) probably_damaging(0.998) TCGA-DD-AA3A-01 1 110882218 110882218 C G RBM15 Missense_Mutation p.S64W 0.41 deleterious_low_confidence(0.02) probably_damaging(0.925) TCGA-DD-AA3A-01 1 154062058 154062058 G A NUP210L Nonsense_Mutation p.R734* 0.21 TCGA-DD-AA3A-01 1 190423865 190423865 T A BRINP3 Silent p.G52G 0.04 TCGA-DD-AA3A-01 1 33160953 33160953 A G SYNC Missense_Mutation p.V249A 0.48 tolerated(0.07) probably_damaging(0.992) TCGA-DD-AA3A-01 1 67412187 67412187 A G MIER1 Intron 0.34 TCGA-DD-AA3A-01 20 10273637 10273637 C G SNAP25 Intron 0.19 TCGA-DD-AA3A-01 20 10273846 10273846 C G SNAP25 Missense_Mutation p.I67M 0.37 deleterious(0.04) possibly_damaging(0.826) TCGA-DD-AA3A-01 20 34204001 34204001 T G SPAG4 Missense_Mutation p.S26A 0.22 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-DD-AA3A-01 20 61943320 61943320 G A COL20A1 Silent p.A572A 0.35 TCGA-DD-AA3A-01 21 38845103 38845103 G A DYRK1A Missense_Mutation p.R43H 0.71 deleterious_low_confidence(0.03) benign(0.288) TCGA-DD-AA3A-01 21 46713395 46713395 G A LINC00205 RNA 0.67 TCGA-DD-AA3A-01 22 38083917 38083917 G T NOL12 Silent p.R28R 0.07 TCGA-DD-AA3A-01 22 41632639 41632639 A G CHADL Missense_Mutation p.F638L 0.05 tolerated(0.43) benign(0.233) TCGA-DD-AA3A-01 2 191840368 191840368 A T STAT1 Intron 0.08 TCGA-DD-AA3A-01 2 220041613 220041613 G A CNPPD1 Intron 0.32 TCGA-DD-AA3A-01 2 242651417 242651417 G C ING5 Missense_Mutation p.R138T 0.09 tolerated(0.13) possibly_damaging(0.511) TCGA-DD-AA3A-01 2 30457289 30457289 G C LBH Silent p.S15S 0.32 TCGA-DD-AA3A-01 2 50699467 50699467 G A NRXN1 Silent p.F1111F 0.31 TCGA-DD-AA3A-01 3 113755465 113755465 C T KIAA1407 Missense_Mutation p.R195K 0.35 deleterious(0) probably_damaging(1) TCGA-DD-AA3A-01 3 113755521 113755521 C T KIAA1407 Silent p.R176R 0.32 TCGA-DD-AA3A-01 3 113755550 113755550 C T KIAA1407 Missense_Mutation p.D167N 0.27 tolerated(0.68) benign(0.093) TCGA-DD-AA3A-01 3 142030539 142030542 ACTT - XRN1 Frame_Shift_Del p.S1645Hfs*9 0.80 TCGA-DD-AA3A-01 3 195690171 195690171 A G SDHAP1 Intron 0.54 TCGA-DD-AA3A-01 3 38103672 38103672 C A DLEC1 Missense_Mutation p.P229H 0.40 deleterious(0) probably_damaging(0.998) TCGA-DD-AA3A-01 3 52437901 52437901 C - BAP1 Frame_Shift_Del p.K421Rfs*9 0.35 TCGA-DD-AA3A-01 4 159593412 159593412 G A ETFDH 5'UTR 0.50 TCGA-DD-AA3A-01 4 162421233 162421233 T C FSTL5 Missense_Mutation p.I465V 0.10 tolerated(0.1) possibly_damaging(0.651) TCGA-DD-AA3A-01 4 73169792 73169792 T G ADAMTS3 Missense_Mutation p.K756Q 0.43 deleterious(0.01) probably_damaging(0.986) TCGA-DD-AA3A-01 5 145847914 145847914 G T TCERG1 Missense_Mutation p.M382I 0.05 deleterious(0.02) unknown(0) TCGA-DD-AA3A-01 6 150005031 150005031 C T LATS1 Silent p.S398S 0.06 TCGA-DD-AA3A-01 6 26156941 26156941 A C HIST1H1E Missense_Mutation p.N108T 0.39 deleterious(0.01) probably_damaging(0.963) TCGA-DD-AA3A-01 6 42935103 42935103 C A PEX6 Intron 0.31 TCGA-DD-AA3A-01 7 107262341 107262341 C T BCAP29 3'UTR 0.03 TCGA-DD-AA3A-01 7 93073038 93073038 T A CALCR Missense_Mutation p.Q261L 0.36 tolerated(1) probably_damaging(0.998) TCGA-DD-AA3A-01 8 70551053 70551053 A G SULF1 Silent p.G837G 0.06 TCGA-DD-AA3A-01 8 77768190 77768190 C T ZFHX4 Silent p.L3011L 0.38 TCGA-DD-AA3A-01 8 95390606 95390606 T C RAD54B Missense_Mutation p.T773A 0.43 deleterious(0.04) possibly_damaging(0.694) TCGA-DD-AA3A-01 9 120476829 120476829 G T TLR4 Missense_Mutation p.W808L 0.73 tolerated(0.11) probably_damaging(1) TCGA-DD-AA3A-01 9 127215648 127215648 G T GPR144 Silent p.L224L 0.67 TCGA-DD-AA3A-01 X 115305166 115305166 G T AGTR2 3'UTR 0.07 TCGA-DD-AA3A-01 X 144909658 144909658 G C TMEM257 3'UTR 0.06 TCGA-DD-AA3A-01 X 48934306 48934306 G A WDR45 Silent p.D114D 0.44 TCGA-DD-AA3A-01 X 49020204 49020204 G C MAGIX Missense_Mutation p.A45P 0.50 tolerated(0.19) probably_damaging(0.982) TCGA-DD-AAC8-01 10 103870894 103870894 T A LDB1 Missense_Mutation p.T61S 0.26 tolerated(0.27) possibly_damaging(0.621) TCGA-DD-AAC8-01 10 105215321 105215321 T A CALHM1 Missense_Mutation p.I247F 0.19 deleterious(0) probably_damaging(0.996) TCGA-DD-AAC8-01 10 111879082 111879082 A T ADD3 Missense_Mutation p.Q277H 0.26 deleterious(0.05) possibly_damaging(0.722) TCGA-DD-AAC8-01 10 112839073 112839073 T C ADRA2A Missense_Mutation p.I440T 0.30 deleterious(0) probably_damaging(0.923) TCGA-DD-AAC8-01 10 117059542 117059542 A G ATRNL1 Splice_Site p.X806_splice 0.21 TCGA-DD-AAC8-01 10 123970404 123970404 A T TACC2 Missense_Mutation p.Q2155L 0.17 possibly_damaging(0.48) TCGA-DD-AAC8-01 10 124672386 124672386 T A FAM24A Silent p.S78S 0.34 TCGA-DD-AAC8-01 10 128114322 128114322 A T C10orf90 3'UTR 0.19 TCGA-DD-AAC8-01 10 13214750 13214750 A G MCM10 Missense_Mutation p.K194E 0.25 deleterious(0.01) possibly_damaging(0.493) TCGA-DD-AAC8-01 10 13240796 13240796 A G MCM10 Missense_Mutation p.I744V 0.16 tolerated(0.86) benign(0.006) TCGA-DD-AAC8-01 10 134660613 134660613 C G TTC40 Missense_Mutation p.R2030S 0.20 tolerated(0.12) benign(0.082) TCGA-DD-AAC8-01 10 135053795 135053795 G A VENTX Silent p.T254T 0.31 TCGA-DD-AAC8-01 10 24722117 24722117 T C KIAA1217 Silent p.D249D 0.28 TCGA-DD-AAC8-01 10 26385344 26385344 T A MYO3A Missense_Mutation p.Y533N 0.25 deleterious(0) probably_damaging(0.969) TCGA-DD-AAC8-01 10 26518688 26518688 T C GAD2 Silent p.I274I 0.15 TCGA-DD-AAC8-01 10 27371759 27371759 T C ANKRD26 Missense_Mutation p.D238G 0.25 tolerated(0.17) benign(0.228) TCGA-DD-AAC8-01 10 48429198 48429198 T A GDF10 Missense_Mutation p.R230W 0.23 deleterious(0) possibly_damaging(0.708) TCGA-DD-AAC8-01 10 50531471 50531471 C A C10orf71 Missense_Mutation p.A294D 0.30 tolerated(0.11) possibly_damaging(0.897) TCGA-DD-AAC8-01 10 51829338 51829338 A T FAM21A Missense_Mutation p.Q53L 0.23 deleterious(0) probably_damaging(0.998) TCGA-DD-AAC8-01 10 63212811 63212811 A G TMEM26 Missense_Mutation p.L10P 0.29 deleterious(0) probably_damaging(0.999) TCGA-DD-AAC8-01 10 64430137 64430137 T A ZNF365 3'UTR 0.41 TCGA-DD-AAC8-01 10 82192005 82192005 A T FAM213A 3'UTR 0.45 TCGA-DD-AAC8-01 10 87379775 87379775 A C GRID1 Missense_Mutation p.Y737D 0.36 deleterious(0) probably_damaging(1) TCGA-DD-AAC8-01 10 92678913 92678913 A G ANKRD1 Missense_Mutation p.V107A 0.32 tolerated(0.84) benign(0.001) TCGA-DD-AAC8-01 10 95072901 95072901 T A MYOF Missense_Mutation p.D1922V 0.25 deleterious(0.01) benign(0.056) TCGA-DD-AAC8-01 10 98369550 98369550 C A PIK3AP1 Missense_Mutation p.G697C 0.51 tolerated(0.06) possibly_damaging(0.86) TCGA-DD-AAC8-01 10 99025682 99025682 T A ARHGAP19 Missense_Mutation p.K86M 0.34 deleterious(0) possibly_damaging(0.823) TCGA-DD-AAC8-01 11 101323689 101323689 T A TRPC6 Missense_Mutation p.R931S 0.19 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-DD-AAC8-01 11 101375297 101375297 T A TRPC6 Missense_Mutation p.N135Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-DD-AAC8-01 11 1017715 1017715 A T MUC6 Missense_Mutation p.S1696T 0.11 unknown(0) TCGA-DD-AAC8-01 11 102733754 102733754 A T MMP12 RNA 0.37 TCGA-DD-AAC8-01 11 104825723 104825723 T A CASP4 Missense_Mutation p.N5Y 0.09 tolerated(0.06) possibly_damaging(0.579) TCGA-DD-AAC8-01 11 105782845 105782845 T C GRIA4 Intron 0.29 TCGA-DD-AAC8-01 11 117314605 117314605 T A DSCAML1 Nonsense_Mutation p.K1347* 0.35 TCGA-DD-AAC8-01 11 117789473 117789473 T G TMPRSS13 Silent p.A34A 0.25 TCGA-DD-AAC8-01 11 118502989 118502989 A T PHLDB1 Silent p.T785T 0.30 TCGA-DD-AAC8-01 11 11987363 11987363 G A DKK3 Missense_Mutation p.P275S 0.22 deleterious(0.02) possibly_damaging(0.496) TCGA-DD-AAC8-01 11 122945480 122945480 A T CLMP Missense_Mutation p.L251M 0.22 deleterious(0.01) possibly_damaging(0.736) TCGA-DD-AAC8-01 11 123813888 123813888 A G OR6T1 Missense_Mutation p.C220R 0.24 tolerated(0.26) possibly_damaging(0.482) TCGA-DD-AAC8-01 11 124637132 124637132 T A MSANTD2 Silent p.A488A 0.27 TCGA-DD-AAC8-01 11 14902118 14902118 T G CYP2R1 Silent p.S188S 0.24 TCGA-DD-AAC8-01 11 1718756 1718756 G A KRTAP5-6 Missense_Mutation p.C94Y 0.32 deleterious_low_confidence(0) unknown(0) TCGA-DD-AAC8-01 11 31669364 31669364 A T ELP4 Nonsense_Mutation p.R335* 0.31 TCGA-DD-AAC8-01 11 33566763 33566763 T A KIAA1549L Missense_Mutation p.L778Q 0.31 deleterious(0) probably_damaging(0.994) TCGA-DD-AAC8-01 11 35226078 35226078 T A CD44 Missense_Mutation p.S391R 0.27 tolerated(0.2) benign(0.009) TCGA-DD-AAC8-01 11 36250861 36250861 A T LDLRAD3 Missense_Mutation p.S318C 0.25 tolerated_low_confidence(0.06) benign(0.113) TCGA-DD-AAC8-01 11 36614484 36614484 T A RAG2 Missense_Mutation p.E412V 0.23 tolerated(0.28) benign(0) TCGA-DD-AAC8-01 11 3687335 3687335 C A CHRNA10 3'UTR 0.29 TCGA-DD-AAC8-01 11 399156 399156 A G PKP3 Silent p.T411T 0.24 TCGA-DD-AAC8-01 11 43350345 43350346 - TA API5 Frame_Shift_Ins p.E344* 0.17 TCGA-DD-AAC8-01 11 44253901 44253901 A T EXT2 Splice_Site p.X588_splice 0.27 TCGA-DD-AAC8-01 11 46329400 46329400 A T CREB3L1 Missense_Mutation p.K122I 0.29 deleterious(0.02) benign(0.145) TCGA-DD-AAC8-01 11 46401716 46401716 G A DGKZ 3'UTR 0.33 TCGA-DD-AAC8-01 11 5020231 5020231 A G OR51L1 Missense_Mutation p.S7G 0.61 tolerated(0.08) benign(0.036) TCGA-DD-AAC8-01 11 5080160 5080160 T A OR52E2 Missense_Mutation p.E233V 0.23 deleterious(0) possibly_damaging(0.747) TCGA-DD-AAC8-01 11 5253966 5253966 G T HBD 3'Flank 0.30 TCGA-DD-AAC8-01 11 5373112 5373112 C T OR51B6 Silent p.R125R 0.52 TCGA-DD-AAC8-01 11 55587486 55587486 T A OR5D18 Silent p.I127I 0.20 TCGA-DD-AAC8-01 11 55761572 55761572 A T OR5F1 Missense_Mutation p.F177Y 0.26 deleterious(0.05) probably_damaging(0.993) TCGA-DD-AAC8-01 11 58978713 58978713 A C MPEG1 Missense_Mutation p.D542E 0.19 tolerated(0.15) benign(0.055) TCGA-DD-AAC8-01 11 6024147 6024147 A T OR56A4 Missense_Mutation p.W78R 0.24 deleterious(0.01) possibly_damaging(0.8) TCGA-DD-AAC8-01 11 61511593 61511593 T A DAGLA Missense_Mutation p.F921I 0.33 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-DD-AAC8-01 11 64359422 64359422 G C SLC22A12 Missense_Mutation p.V132L 0.33 deleterious(0) possibly_damaging(0.63) TCGA-DD-AAC8-01 11 65417088 65417111 CCACCACAGCCAAGCCATCAGTAC - SIPA1 In_Frame_Del p.T862_P869del 0.46 TCGA-DD-AAC8-01 11 65787819 65787819 A T CATSPER1 Missense_Mutation p.L678Q 0.31 deleterious(0) probably_damaging(0.998) TCGA-DD-AAC8-01 11 66360350 66360350 T A CCDC87 Missense_Mutation p.Q46L 0.35 tolerated(0.25) benign(0.003) TCGA-DD-AAC8-01 11 68517742 68517742 T A MTL5 Silent p.L129L 0.31 TCGA-DD-AAC8-01 11 72291639 72291639 A T PDE2A Silent p.S721S 0.24 TCGA-DD-AAC8-01 11 77413496 77413496 T C RSF1 Missense_Mutation p.M260V 0.27 tolerated(0.49) benign(0) TCGA-DD-AAC8-01 11 9868576 9868576 T A SBF2 Missense_Mutation p.K954M 0.20 deleterious(0) probably_damaging(0.998) TCGA-DD-AAC8-01 12 101560282 101560282 T A SLC5A8 Missense_Mutation p.N506Y 0.36 deleterious(0.01) benign(0.092) TCGA-DD-AAC8-01 12 104071229 104071229 A T STAB2 Splice_Site p.X883_splice 0.32 TCGA-DD-AAC8-01 12 105151144 105151144 T A CHST11 Missense_Mutation p.F208I 0.36 deleterious(0) probably_damaging(1) TCGA-DD-AAC8-01 12 10532337 10532337 A T KLRK1 Missense_Mutation p.I68N 0.26 deleterious(0) possibly_damaging(0.822) TCGA-DD-AAC8-01 12 10583625 10583625 T A KLRC2 3'UTR 0.31 TCGA-DD-AAC8-01 12 109876380 109876380 G A MYO1H Missense_Mutation p.R734Q 0.32 tolerated(0.27) benign(0.063) TCGA-DD-AAC8-01 12 109921745 109921745 A T UBE3B Missense_Mutation p.R81W 0.37 deleterious(0) possibly_damaging(0.784) TCGA-DD-AAC8-01 12 114383647 114383647 G T RBM19 Missense_Mutation p.Q538K 0.05 tolerated(0.21) benign(0.038) TCGA-DD-AAC8-01 12 124298165 124298165 A T DNAH10 Missense_Mutation p.Y1082F 0.40 benign(0) TCGA-DD-AAC8-01 12 132464277 132464277 A T EP400 Silent p.G458G 0.37 TCGA-DD-AAC8-01 12 133219131 133219131 T A POLE Missense_Mutation p.N1638I 0.32 deleterious(0.01) possibly_damaging(0.649) TCGA-DD-AAC8-01 12 32369351 32369351 A T BICD1 Silent p.A128A 0.22 TCGA-DD-AAC8-01 12 333252 333252 T A SLC6A13 Missense_Mutation p.Y406F 0.22 tolerated(1) benign(0.018) TCGA-DD-AAC8-01 12 40761452 40761452 A T LRRK2 Missense_Mutation p.Q2490L 0.29 deleterious(0) benign(0.384) TCGA-DD-AAC8-01 12 46205216 46205216 C G ARID2 Nonsense_Mutation p.Y100* 0.54 TCGA-DD-AAC8-01 12 4645227 4645227 C A C12orf4 Missense_Mutation p.G45V 0.26 tolerated(0.18) probably_damaging(0.978) TCGA-DD-AAC8-01 12 49061475 49061475 C T KANSL2 Splice_Site p.X325_splice 0.05 TCGA-DD-AAC8-01 12 50388025 50388025 T A RACGAP1 Missense_Mutation p.S410C 0.29 deleterious(0) probably_damaging(0.932) TCGA-DD-AAC8-01 12 53684151 53684151 G T ESPL1 Silent p.L1754L 0.41 TCGA-DD-AAC8-01 12 55357002 55357002 A G TESPA1 Missense_Mutation p.L227P 0.16 deleterious(0.02) probably_damaging(1) TCGA-DD-AAC8-01 12 55367329 55367329 T A TESPA1 Intron 0.25 TCGA-DD-AAC8-01 12 55422442 55422442 C T NEUROD4 3'UTR 0.21 TCGA-DD-AAC8-01 12 55886887 55886887 T C OR6C68 Silent p.H242H 0.47 TCGA-DD-AAC8-01 12 56386095 56386095 A T RAB5B 3'UTR 0.19 TCGA-DD-AAC8-01 12 56530999 56530999 T G ESYT1 Intron 0.22 TCGA-DD-AAC8-01 12 58122003 58122003 G A AGAP2-AS1 3'UTR 0.60 TCGA-DD-AAC8-01 12 65514841 65514841 T A WIF1 Missense_Mutation p.Q44L 0.23 deleterious(0) probably_damaging(0.994) TCGA-DD-AAC8-01 12 68715351 68715352 - T MDM1 Frame_Shift_Ins p.H287Tfs*4 0.19 TCGA-DD-AAC8-01 12 70983958 70983958 A T PTPRB Silent p.L612L 0.29 TCGA-DD-AAC8-01 12 7842444 7842444 A T GDF3 3'UTR 0.30 TCGA-DD-AAC8-01 12 80655748 80655748 G C OTOGL Splice_Site p.X621_splice 0.22 TCGA-DD-AAC8-01 13 109535531 109535531 T A MYO16 Missense_Mutation p.L495H 0.31 deleterious(0) probably_damaging(0.992) TCGA-DD-AAC8-01 13 112723899 112723899 C A SOX1 3'UTR 0.26 TCGA-DD-AAC8-01 13 19752513 19752513 T G TUBA3C Missense_Mutation p.Y83S 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.581) TCGA-DD-AAC8-01 13 21734117 21734117 T A SKA3 Missense_Mutation p.Y280F 0.44 tolerated(0.5) benign(0.009) TCGA-DD-AAC8-01 13 25283840 25283840 A T ATP12A Silent p.G885G 0.35 TCGA-DD-AAC8-01 13 27333221 27333221 T A GPR12 Missense_Mutation p.K248N 0.41 tolerated(0.12) probably_damaging(0.992) TCGA-DD-AAC8-01 13 28542904 28542904 G A CDX2 Silent p.Y80Y 0.50 TCGA-DD-AAC8-01 13 33320210 33320210 A T PDS5B Missense_Mutation p.Q903L 0.31 deleterious(0) benign(0.113) TCGA-DD-AAC8-01 13 43360937 43360937 T A FAM216B Silent p.I46I 0.30 TCGA-DD-AAC8-01 13 45148297 45148297 T A TSC22D1 Silent p.T638T 0.23 TCGA-DD-AAC8-01 13 72440907 72440907 T A DACH1 Translation_Start_Site p.M1? 0.18 unknown(0) TCGA-DD-AAC8-01 13 77755971 77755971 C A MYCBP2 Silent p.L1564L 0.71 TCGA-DD-AAC8-01 14 102496272 102496272 G T DYNC1H1 Missense_Mutation p.K3253N 0.25 possibly_damaging(0.612) TCGA-DD-AAC8-01 14 103442078 103442078 C T CDC42BPB Missense_Mutation p.D484N 0.71 tolerated(0.18) benign(0.052) TCGA-DD-AAC8-01 14 104433111 104433111 T A TDRD9 Silent p.L236L 0.33 TCGA-DD-AAC8-01 14 105419689 105419689 A T AHNAK2 Missense_Mutation p.V700E 0.31 possibly_damaging(0.885) TCGA-DD-AAC8-01 14 107078508 107078508 A T IGHV1-58 Silent p.V72V 0.24 TCGA-DD-AAC8-01 14 19378061 19378061 T A OR11H12 Nonsense_Mutation p.C156* 0.05 TCGA-DD-AAC8-01 14 21168534 21168534 A G RNASE4 3'UTR 0.27 TCGA-DD-AAC8-01 14 21624103 21624103 T A OR5AU1 Missense_Mutation p.S28C 0.25 tolerated_low_confidence(0.07) benign(0) TCGA-DD-AAC8-01 14 23315040 23315040 C T MMP14 Missense_Mutation p.P514L 0.52 deleterious(0.02) benign(0.18) TCGA-DD-AAC8-01 14 23821009 23821009 A T SLC22A17 Missense_Mutation p.I108N 0.30 deleterious(0) possibly_damaging(0.69) TCGA-DD-AAC8-01 14 24620416 24620416 A T RNF31 Missense_Mutation p.Q522L 0.48 tolerated(0.24) benign(0.014) TCGA-DD-AAC8-01 14 24884806 24884806 T A NYNRIN Missense_Mutation p.L1284Q 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.86) TCGA-DD-AAC8-01 14 60635587 60635587 G T DHRS7 Intron 0.21 TCGA-DD-AAC8-01 14 61186827 61186827 A T SIX4 Silent p.I400I 0.33 TCGA-DD-AAC8-01 14 62200973 62200973 A T HIF1A Missense_Mutation p.Q357L 0.30 deleterious(0) possibly_damaging(0.639) TCGA-DD-AAC8-01 14 64408641 64408641 C T SYNE2 Silent p.I92I 0.37 TCGA-DD-AAC8-01 14 64408680 64408680 A T SYNE2 Silent p.S105S 0.40 TCGA-DD-AAC8-01 14 68233158 68233158 T A ZFYVE26 Missense_Mutation p.S1933C 0.32 deleterious(0) probably_damaging(0.956) TCGA-DD-AAC8-01 14 69967330 69967330 A T PLEKHD1 Nonsense_Mutation p.K94* 0.36 TCGA-DD-AAC8-01 14 77767555 77767555 T A POMT2 Missense_Mutation p.T232S 0.31 tolerated(0.09) possibly_damaging(0.732) TCGA-DD-AAC8-01 14 86093054 86093054 T A FLRT2 3'UTR 0.39 TCGA-DD-AAC8-01 14 91942204 91942204 T A SMEK1 Missense_Mutation p.Q406L 0.30 tolerated(0.08) probably_damaging(0.922) TCGA-DD-AAC8-01 14 92091187 92091187 T A CATSPERB Missense_Mutation p.Y636F 0.45 tolerated(0.33) benign(0.018) TCGA-DD-AAC8-01 14 93118727 93118727 A T RIN3 Missense_Mutation p.S445C 0.37 deleterious(0.03) probably_damaging(0.922) TCGA-DD-AAC8-01 14 99642349 99642349 G A BCL11B Missense_Mutation p.A275V 0.28 tolerated(0.09) possibly_damaging(0.588) TCGA-DD-AAC8-01 15 24926751 24926751 A T NPAP1 3'UTR 0.40 TCGA-DD-AAC8-01 15 27222169 27222169 A G GABRG3 Missense_Mutation p.D25G 0.34 tolerated(0.11) benign(0.071) TCGA-DD-AAC8-01 15 39546938 39546938 A T C15orf54 3'UTR 0.45 TCGA-DD-AAC8-01 15 39885868 39885868 A T THBS1 Missense_Mutation p.Q1089L 0.40 deleterious(0) probably_damaging(0.985) TCGA-DD-AAC8-01 15 48443350 48443350 C T MYEF2 Missense_Mutation p.G442E 0.35 tolerated(0.59) benign(0.106) TCGA-DD-AAC8-01 15 55967845 55967845 T C PRTG Missense_Mutation p.N473S 0.33 deleterious(0) probably_damaging(0.999) TCGA-DD-AAC8-01 15 60720769 60720769 G A NARG2 Silent p.C893C 0.09 TCGA-DD-AAC8-01 15 72700152 72700152 C A TMEM202 Missense_Mutation p.A247D 0.38 tolerated(0.29) benign(0.006) TCGA-DD-AAC8-01 15 79291113 79291113 G T RASGRF1 Missense_Mutation p.A950D 0.29 deleterious(0.02) benign(0.315) TCGA-DD-AAC8-01 15 79588585 79588585 G T ANKRD34C 3'UTR 0.28 TCGA-DD-AAC8-01 15 83826759 83826759 T C HDGFRP3 Missense_Mutation p.K66E 0.45 tolerated(1) benign(0.02) TCGA-DD-AAC8-01 15 84694127 84694127 G T ADAMTSL3 Missense_Mutation p.R1532L 0.37 tolerated(0.08) benign(0.319) TCGA-DD-AAC8-01 15 91038004 91038004 A G IQGAP1 Missense_Mutation p.Y1563C 0.38 deleterious(0) probably_damaging(0.999) TCGA-DD-AAC8-01 15 93552536 93552536 C T CHD2 Silent p.H1525H 0.46 TCGA-DD-AAC8-01 15 99251163 99251163 A T IGF1R Missense_Mutation p.D156V 0.46 deleterious(0) probably_damaging(1) TCGA-DD-AAC8-01 16 19468227 19468227 A C TMC5 Intron 0.34 TCGA-DD-AAC8-01 16 2009598 2009598 G C NDUFB10 5'UTR 0.65 TCGA-DD-AAC8-01 16 20396093 20396093 C T PDILT Missense_Mutation p.G95R 0.60 tolerated(0.44) probably_damaging(1) TCGA-DD-AAC8-01 16 23208731 23208731 T A SCNN1G Missense_Mutation p.S354T 0.19 deleterious(0) probably_damaging(0.991) TCGA-DD-AAC8-01 16 2813113 2813113 G T SRRM2 Nonsense_Mutation p.E862* 0.28 TCGA-DD-AAC8-01 16 29847023 29847023 A T MVP Splice_Site p.X193_splice 0.24 TCGA-DD-AAC8-01 16 30364546 30364546 C A CD2BP2 Missense_Mutation p.G291W 0.22 deleterious(0.02) possibly_damaging(0.7) TCGA-DD-AAC8-01 16 31439697 31439697 G A COX6A2 5'UTR 0.23 TCGA-DD-AAC8-01 16 31484780 31484780 T C TGFB1I1 Missense_Mutation p.L11P 0.24 deleterious(0) probably_damaging(1) TCGA-DD-AAC8-01 16 48158122 48158122 A T ABCC12 Splice_Site p.X529_splice 0.72 TCGA-DD-AAC8-01 16 56667700 56667700 T A MT1M Nonsense_Mutation p.C44* 0.29 TCGA-DD-AAC8-01 16 64981610 64981610 T A CDH11 Missense_Mutation p.T763S 0.25 tolerated(0.98) probably_damaging(0.996) TCGA-DD-AAC8-01 16 66656097 66656097 T A CMTM4 Missense_Mutation p.Y164F 0.64 tolerated(1) benign(0.065) TCGA-DD-AAC8-01 16 67264347 67264347 A G FHOD1 Missense_Mutation p.M974T 0.25 tolerated(1) benign(0.004) TCGA-DD-AAC8-01 16 67319047 67319047 A T PLEKHG4 Silent p.G708G 0.57 TCGA-DD-AAC8-01 16 68344261 68344261 C T SLC7A6OS Missense_Mutation p.A150T 0.25 tolerated(0.47) benign(0.039) TCGA-DD-AAC8-01 16 8860122 8860122 A T ABAT Missense_Mutation p.N200Y 0.57 deleterious(0) probably_damaging(1) TCGA-DD-AAC8-01 16 89337125 89337125 C A AC137932.1 3'UTR 0.12 TCGA-DD-AAC8-01 17 10357033 10357033 A T MYH4 Missense_Mutation p.L954H 0.20 deleterious(0) probably_damaging(0.999) TCGA-DD-AAC8-01 17 10357189 10357189 A T MYH4 Nonsense_Mutation p.L902* 0.24 TCGA-DD-AAC8-01 17 10409339 10409339 A T MYH1 Silent p.T682T 0.23 TCGA-DD-AAC8-01 17 15902795 15902795 C T TTC19 5'UTR 0.61 TCGA-DD-AAC8-01 17 16667390 16667390 T A CCDC144A Silent p.P1333P 0.29 TCGA-DD-AAC8-01 17 28614931 28614931 A C BLMH Missense_Mutation p.V119G 0.35 deleterious(0) possibly_damaging(0.707) TCGA-DD-AAC8-01 17 28616480 28616480 A T BLMH Missense_Mutation p.C78S 0.33 deleterious(0.04) possibly_damaging(0.451) TCGA-DD-AAC8-01 17 3101071 3101071 T A OR1A2 Missense_Mutation p.L87M 0.36 tolerated(0.08) benign(0.126) TCGA-DD-AAC8-01 17 33738498 33738498 T A SLFN12 Missense_Mutation p.K532N 0.19 deleterious(0.03) benign(0.403) TCGA-DD-AAC8-01 17 34859822 34859822 G T MYO19 Silent p.T648T 0.36 TCGA-DD-AAC8-01 17 3572829 3572829 A T EMC6 3'UTR 0.25 TCGA-DD-AAC8-01 17 37313165 37313165 A T ARL5C Silent p.S174S 0.19 TCGA-DD-AAC8-01 17 37826074 37826074 T A PNMT Missense_Mutation p.L132H 0.24 tolerated(0.1) probably_damaging(0.952) TCGA-DD-AAC8-01 17 38904444 38904444 T A KRT25 3'UTR 0.31 TCGA-DD-AAC8-01 17 39240953 39240953 T A KRTAP4-7 3'UTR 0.18 TCGA-DD-AAC8-01 17 39388765 39388765 T A KRTAP9-3 Nonsense_Mutation p.C4* 0.13 TCGA-DD-AAC8-01 17 39406556 39406556 G T KRTAP9-4 3'UTR 0.32 TCGA-DD-AAC8-01 17 39635249 39635249 T A KRT35 Splice_Site p.X238_splice 0.09 TCGA-DD-AAC8-01 17 39777963 39777963 A T KRT17 Missense_Mutation p.V239E 0.23 deleterious(0) probably_damaging(0.986) TCGA-DD-AAC8-01 17 40915025 40915025 T A RAMP2 3'UTR 0.27 TCGA-DD-AAC8-01 17 43893924 43893924 T A CRHR1 Missense_Mutation p.Y73N 0.25 tolerated(0.97) benign(0.001) TCGA-DD-AAC8-01 17 45888020 45888020 T A OSBPL7 Missense_Mutation p.K607M 0.22 deleterious(0) probably_damaging(0.974) TCGA-DD-AAC8-01 17 46622356 46622356 C A HOXB2 5'UTR 0.22 TCGA-DD-AAC8-01 17 46691811 46691811 A T HOXB8 Missense_Mutation p.Y86N 0.21 deleterious(0.02) possibly_damaging(0.642) TCGA-DD-AAC8-01 17 48917022 48917022 A T WFIKKN2 Missense_Mutation p.I125F 0.30 deleterious(0) possibly_damaging(0.611) TCGA-DD-AAC8-01 17 49239295 49239295 A T NME1 3'UTR 0.15 TCGA-DD-AAC8-01 17 5086891 5086891 T A ZNF594 Nonsense_Mutation p.K221* 0.26 TCGA-DD-AAC8-01 17 54981763 54981763 T A TRIM25 Silent p.T260T 0.24 TCGA-DD-AAC8-01 17 56405243 56405243 A G BZRAP1 Silent p.P13P 0.06 TCGA-DD-AAC8-01 17 6373607 6373607 T A PITPNM3 Silent p.T582T 0.29 TCGA-DD-AAC8-01 17 64059102 64059102 T A CEP112 Silent p.L351L 0.09 TCGA-DD-AAC8-01 17 6546320 6546320 T G TXNDC17 Missense_Mutation p.M118R 0.12 deleterious(0) possibly_damaging(0.809) TCGA-DD-AAC8-01 17 6718508 6718508 A T TEKT1 Silent p.S201S 0.29 TCGA-DD-AAC8-01 17 71228508 71228508 A T FAM104A 5'UTR 0.14 TCGA-DD-AAC8-01 17 7227004 7227004 T A NEURL4 Missense_Mutation p.Q767L 0.24 deleterious(0.01) benign(0.335) TCGA-DD-AAC8-01 17 7572740 7572740 C T TP53 3'UTR 0.62 TCGA-DD-AAC8-01 17 76047470 76047470 A T TNRC6C Missense_Mutation p.E776V 0.22 tolerated(0.24) benign(0.127) TCGA-DD-AAC8-01 17 76677126 76677126 T A CYTH1 Splice_Site p.X298_splice 0.20 TCGA-DD-AAC8-01 17 7912843 7912843 A T GUCY2D Missense_Mutation p.K563M 0.29 deleterious(0) probably_damaging(0.993) TCGA-DD-AAC8-01 17 79479165 79479165 C A ACTG1 Missense_Mutation p.V43F 0.38 deleterious_low_confidence(0.04) benign(0.077) TCGA-DD-AAC8-01 17 79826836 79826836 G C ARHGDIA Missense_Mutation p.I177M 0.10 deleterious(0) possibly_damaging(0.852) TCGA-DD-AAC8-01 18 22017984 22017984 A G IMPACT Missense_Mutation p.K116R 0.36 tolerated(0.13) benign(0.013) TCGA-DD-AAC8-01 18 3067424 3067424 T A MYOM1 Missense_Mutation p.T1632S 0.41 tolerated(0.05) benign(0.073) TCGA-DD-AAC8-01 18 3086130 3086130 T A MYOM1 Missense_Mutation p.E1386V 0.29 deleterious(0.02) possibly_damaging(0.569) TCGA-DD-AAC8-01 18 30913332 30913332 T A CCDC178 Missense_Mutation p.I229L 0.29 tolerated(0.17) benign(0.023) TCGA-DD-AAC8-01 18 30926215 30926215 T A CCDC178 Silent p.S206S 0.39 TCGA-DD-AAC8-01 18 31523123 31523123 T A NOL4 Missense_Mutation p.H483L 0.33 deleterious(0) probably_damaging(0.945) TCGA-DD-AAC8-01 18 3880047 3880047 G A DLGAP1 Missense_Mutation p.R8C 0.45 deleterious(0) probably_damaging(0.939) TCGA-DD-AAC8-01 18 44068976 44068976 G T LOXHD1 Missense_Mutation p.A892D 0.40 deleterious(0.04) possibly_damaging(0.886) TCGA-DD-AAC8-01 18 5423442 5423442 C T EPB41L3 Missense_Mutation p.R425H 0.29 deleterious(0) probably_damaging(1) TCGA-DD-AAC8-01 18 55711714 55711714 G C NEDD4L 5'UTR 0.40 TCGA-DD-AAC8-01 18 5890639 5890639 A T TMEM200C Missense_Mutation p.L475H 0.64 deleterious(0) probably_damaging(0.926) TCGA-DD-AAC8-01 18 9258388 9258388 A T ANKRD12 Missense_Mutation p.H1708L 0.36 deleterious_low_confidence(0.03) benign(0.008) TCGA-DD-AAC8-01 19 12821577 12821577 T A TNPO2 Silent p.S376S 0.25 TCGA-DD-AAC8-01 19 12903946 12903946 C G JUNB 3'UTR 0.61 TCGA-DD-AAC8-01 19 14677729 14677729 C A NDUFB7 Missense_Mutation p.Q43H 0.35 tolerated(0.06) probably_damaging(0.976) TCGA-DD-AAC8-01 19 14991448 14991448 G T OR7A17 Silent p.T240T 0.26 TCGA-DD-AAC8-01 19 17256246 17256246 A T MYO9B Missense_Mutation p.S294C 0.31 deleterious(0) probably_damaging(0.988) TCGA-DD-AAC8-01 19 17973829 17973829 A T RPL18A Missense_Mutation p.Q144L 0.38 deleterious(0) probably_damaging(0.928) TCGA-DD-AAC8-01 19 17988625 17988625 G T SLC5A5 Silent p.A264A 0.34 TCGA-DD-AAC8-01 19 18703049 18703049 C G C19orf60 3'UTR 0.25 TCGA-DD-AAC8-01 19 18899478 18899478 A T COMP Missense_Mutation p.C229S 0.32 deleterious(0.01) benign(0.12) TCGA-DD-AAC8-01 19 22156559 22156559 T A ZNF208 Missense_Mutation p.K426I 0.27 deleterious(0.03) possibly_damaging(0.481) TCGA-DD-AAC8-01 19 22574901 22574901 T A ZNF98 Missense_Mutation p.K379M 0.17 deleterious(0) possibly_damaging(0.783) TCGA-DD-AAC8-01 19 23926367 23926367 A T ZNF681 3'UTR 0.34 TCGA-DD-AAC8-01 19 36014299 36014299 T A SBSN 3'UTR 0.38 TCGA-DD-AAC8-01 19 3823272 3823272 T A ZFR2 Missense_Mutation p.Q448L 0.26 deleterious(0) benign(0.086) TCGA-DD-AAC8-01 19 38964354 38964354 A T RYR1 Missense_Mutation p.Q1368L 0.28 benign(0.088) TCGA-DD-AAC8-01 19 42223902 42223902 A T CEACAM5 Nonsense_Mutation p.K516* 0.25 TCGA-DD-AAC8-01 19 42312947 42312947 T A CEACAM3 Missense_Mutation p.L174Q 0.16 deleterious(0.02) possibly_damaging(0.902) TCGA-DD-AAC8-01 19 43026217 43026217 T A CEACAM1 Missense_Mutation p.S188C 0.30 deleterious(0) probably_damaging(0.999) TCGA-DD-AAC8-01 19 43414973 43414973 T A PSG6 Missense_Mutation p.L155F 0.26 tolerated(0.18) benign(0.182) TCGA-DD-AAC8-01 19 43576010 43576010 G A PSG2 Missense_Mutation p.A269V 0.29 deleterious(0.03) probably_damaging(0.98) TCGA-DD-AAC8-01 19 44677254 44677254 C A ZNF226 Intron 0.45 TCGA-DD-AAC8-01 19 45790824 45790824 A T MARK4 Missense_Mutation p.S466C 0.30 deleterious(0) probably_damaging(0.971) TCGA-DD-AAC8-01 19 46627523 46627523 A T IGFL3 Splice_Site p.X27_splice 0.29 TCGA-DD-AAC8-01 19 47761595 47761595 A T CCDC9 5'UTR 0.23 TCGA-DD-AAC8-01 19 48182982 48182982 G T GLTSCR1 Missense_Mutation p.Q185H 0.16 unknown(0) TCGA-DD-AAC8-01 19 48182983 48182983 G T GLTSCR1 Missense_Mutation p.D186Y 0.14 unknown(0) TCGA-DD-AAC8-01 19 50156008 50156008 A T SCAF1 Missense_Mutation p.R788W 0.24 unknown(0) TCGA-DD-AAC8-01 19 50453402 50453402 T A SIGLEC11 Missense_Mutation p.E641V 0.32 deleterious(0) possibly_damaging(0.806) TCGA-DD-AAC8-01 19 50662761 50662761 A T IZUMO2 Nonsense_Mutation p.Y128* 0.32 TCGA-DD-AAC8-01 19 51330915 51330915 T C KLK15 Intron 0.31 TCGA-DD-AAC8-01 19 51520376 51520376 A T KLK10 Missense_Mutation p.C87S 0.26 deleterious(0) probably_damaging(0.999) TCGA-DD-AAC8-01 19 52328589 52328589 T A FPR3 3'UTR 0.17 TCGA-DD-AAC8-01 19 52497458 52497458 T A ZNF615 Missense_Mutation p.S302C 0.29 tolerated(0.06) possibly_damaging(0.8) TCGA-DD-AAC8-01 19 53611940 53611940 G T ZNF415 Nonsense_Mutation p.S453* 0.21 TCGA-DD-AAC8-01 19 53668306 53668306 A T ZNF665 Silent p.I479I 0.33 TCGA-DD-AAC8-01 19 54401692 54401692 A T PRKCG Splice_Site p.X365_splice 0.30 TCGA-DD-AAC8-01 19 55512159 55512159 A T NLRP2 Missense_Mutation p.N1028Y 0.22 deleterious(0) benign(0.035) TCGA-DD-AAC8-01 19 55658291 55658291 G C TNNT1 Intron 0.59 TCGA-DD-AAC8-01 19 57654034 57654034 A T ZIM3 5'UTR 0.26 TCGA-DD-AAC8-01 19 579507 579507 A T BSG Silent p.T141T 0.27 TCGA-DD-AAC8-01 19 5867550 5867550 G A FUT5 Missense_Mutation p.R63C 0.29 tolerated(0.19) benign(0.002) TCGA-DD-AAC8-01 19 6366366 6366366 A T CLPP Missense_Mutation p.Q218L 0.26 deleterious(0.01) benign(0.028) TCGA-DD-AAC8-01 19 691985 691985 A T PRSS57 Missense_Mutation p.L85Q 0.32 tolerated(0.34) benign(0.11) TCGA-DD-AAC8-01 19 7625969 7625969 A T PNPLA6 Missense_Mutation p.S1306C 0.52 deleterious(0.05) possibly_damaging(0.818) TCGA-DD-AAC8-01 19 853375 853375 A T ELANE Missense_Mutation p.N113I 0.33 tolerated(0.13) benign(0.155) TCGA-DD-AAC8-01 19 8563756 8563756 G A PRAM1 Silent p.A312A 0.33 TCGA-DD-AAC8-01 19 9061256 9061256 A T MUC16 Silent p.S8730S 0.35 TCGA-DD-AAC8-01 1 111146551 111146551 T A KCNA2 Missense_Mutation p.Q285L 0.43 deleterious(0.03) probably_damaging(0.954) TCGA-DD-AAC8-01 1 111825627 111825627 G T CHIAP2 RNA 0.38 TCGA-DD-AAC8-01 1 117556032 117556032 A T CD101 Missense_Mutation p.K282N 0.40 deleterious(0.02) benign(0.184) TCGA-DD-AAC8-01 1 12183820 12183820 G A TNFRSF8 Silent p.T363T 0.39 TCGA-DD-AAC8-01 1 144868114 144868114 G T PDE4DIP Silent p.A1775A 0.09 TCGA-DD-AAC8-01 1 145555806 145555806 T A ANKRD35 Missense_Mutation p.S52T 0.27 tolerated(0.27) benign(0.418) TCGA-DD-AAC8-01 1 147231300 147231300 T A GJA5 Missense_Mutation p.K16M 0.10 deleterious(0) probably_damaging(0.962) TCGA-DD-AAC8-01 1 150123217 150123217 A T PLEKHO1 Missense_Mutation p.K49I 0.10 deleterious(0.01) possibly_damaging(0.863) TCGA-DD-AAC8-01 1 150131752 150131752 A T PLEKHO1 3'UTR 0.11 TCGA-DD-AAC8-01 1 150316900 150316900 G T PRPF3 Intron 0.64 TCGA-DD-AAC8-01 1 150680778 150680778 T A HORMAD1 Missense_Mutation p.L167F 0.25 deleterious(0) probably_damaging(1) TCGA-DD-AAC8-01 1 150686584 150686584 A T HORMAD1 Missense_Mutation p.Y86N 0.25 deleterious(0) probably_damaging(0.995) TCGA-DD-AAC8-01 1 150956828 150956829 CA T ANXA9 Frame_Shift_Del p.T114Qfs*9 0.12 TCGA-DD-AAC8-01 1 150957133 150957133 C G ANXA9 Missense_Mutation p.C151W 0.14 deleterious(0) probably_damaging(0.995) TCGA-DD-AAC8-01 1 151006513 151006513 A T PRUNE Missense_Mutation p.R389W 0.09 deleterious(0.04) possibly_damaging(0.599) TCGA-DD-AAC8-01 1 151278812 151278812 G A PI4KB Missense_Mutation p.L416F 0.14 deleterious(0) probably_damaging(0.935) TCGA-DD-AAC8-01 1 152191860 152191860 A T HRNR Missense_Mutation p.S749T 0.11 unknown(0) TCGA-DD-AAC8-01 1 152283807 152283807 T A FLG Silent p.V1185V 0.10 TCGA-DD-AAC8-01 1 152285144 152285144 G C FLG Missense_Mutation p.R740G 0.12 possibly_damaging(0.908) TCGA-DD-AAC8-01 1 152538215 152538215 A C LCE3E 3'UTR 0.15 TCGA-DD-AAC8-01 1 152760855 152760855 T A LCE1E 3'UTR 0.12 TCGA-DD-AAC8-01 1 153520241 153520241 A T S100A3 Missense_Mutation p.Y75N 0.17 deleterious(0) probably_damaging(0.909) TCGA-DD-AAC8-01 1 154130187 154130187 T C NUP210L 5'Flank 0.21 TCGA-DD-AAC8-01 1 154226401 154226401 A T UBAP2L Missense_Mutation p.N564Y 0.25 deleterious(0.02) unknown(0) TCGA-DD-AAC8-01 1 154517399 154517399 T A TDRD10 Missense_Mutation p.L309Q 0.11 deleterious(0) probably_damaging(0.995) TCGA-DD-AAC8-01 1 154561139 154561139 T A ADAR Missense_Mutation p.S925C 0.12 deleterious(0) probably_damaging(0.95) TCGA-DD-AAC8-01 1 155450303 155450303 T A ASH1L Silent p.T786T 0.11 TCGA-DD-AAC8-01 1 156517962 156517962 T A IQGAP3 Missense_Mutation p.Q736L 0.18 tolerated(0.09) benign(0.063) TCGA-DD-AAC8-01 1 156617431 156617431 T A BCAN Missense_Mutation p.Y200N 0.11 deleterious(0) probably_damaging(0.993) TCGA-DD-AAC8-01 1 156939079 156939079 T A ARHGEF11 Missense_Mutation p.S274C 0.09 deleterious(0.02) benign(0.049) TCGA-DD-AAC8-01 1 157804379 157804379 A T CD5L Missense_Mutation p.L179Q 0.35 deleterious(0) probably_damaging(0.995) TCGA-DD-AAC8-01 1 158390244 158390244 T A OR10K2 Missense_Mutation p.H138L 0.11 tolerated(0.51) benign(0.044) TCGA-DD-AAC8-01 1 158532685 158532685 G A OR6P1 Missense_Mutation p.A237V 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-DD-AAC8-01 1 158580951 158580951 A T SPTA1 3'UTR 0.09 TCGA-DD-AAC8-01 1 158819078 158819078 T A MNDA 3'UTR 0.11 TCGA-DD-AAC8-01 1 159923228 159923228 A C SLAMF9 Missense_Mutation p.F88V 0.13 tolerated(0.54) benign(0.026) TCGA-DD-AAC8-01 1 161693276 161693276 A T FCRLB Missense_Mutation p.S58C 0.13 deleterious(0) possibly_damaging(0.9) TCGA-DD-AAC8-01 1 16358337 16358337 A T CLCNKA Silent p.T585T 0.75 TCGA-DD-AAC8-01 1 166927035 166927035 T A ILDR2 Missense_Mutation p.Y117F 0.14 deleterious(0) probably_damaging(0.993) TCGA-DD-AAC8-01 1 169200018 169200018 T C NME7 Missense_Mutation p.M310V 0.12 tolerated(0.06) benign(0.03) TCGA-DD-AAC8-01 1 170916672 170916672 T A MROH9 Missense_Mutation p.S10R 0.17 deleterious_low_confidence(0) possibly_damaging(0.663) TCGA-DD-AAC8-01 1 172411330 172411330 T A PIGC Missense_Mutation p.S145C 0.15 deleterious(0.02) probably_damaging(0.989) TCGA-DD-AAC8-01 1 173505036 173505036 T A SLC9C2 Missense_Mutation p.I570L 0.13 tolerated(0.17) benign(0.016) TCGA-DD-AAC8-01 1 173934198 173934198 T A RC3H1 Missense_Mutation p.Q465H 0.11 tolerated(0.2) probably_damaging(0.997) TCGA-DD-AAC8-01 1 179530443 179530443 A T NPHS2 Silent p.P144P 0.15 TCGA-DD-AAC8-01 1 182443327 182443327 A T RGSL1 Missense_Mutation p.I361F 0.12 tolerated(0.07) benign(0.231) TCGA-DD-AAC8-01 1 182836162 182836162 A T DHX9 Missense_Mutation p.H514L 0.13 deleterious(0) probably_damaging(1) TCGA-DD-AAC8-01 1 183208546 183208546 A T LAMC2 Missense_Mutation p.M973L 0.26 tolerated(0.43) benign(0.006) TCGA-DD-AAC8-01 1 183857686 183857686 A T RGL1 Nonsense_Mutation p.K379* 0.12 TCGA-DD-AAC8-01 1 186034407 186034407 G T HMCN1 Silent p.G2517G 0.17 TCGA-DD-AAC8-01 1 186275482 186275482 A C PRG4 Missense_Mutation p.K211Q 0.12 possibly_damaging(0.791) TCGA-DD-AAC8-01 1 186644523 186644523 A T PTGS2 Silent p.A421A 0.11 TCGA-DD-AAC8-01 1 190068155 190068155 G T BRINP3 Missense_Mutation p.Q432K 0.14 tolerated(0.26) benign(0.081) TCGA-DD-AAC8-01 1 192778220 192778220 T A RGS2 Missense_Mutation p.L7M 0.14 tolerated_low_confidence(0.13) benign(0.005) TCGA-DD-AAC8-01 1 197169358 197169358 C A ZBTB41 Missense_Mutation p.Q82H 0.10 tolerated_low_confidence(0.22) benign(0.007) TCGA-DD-AAC8-01 1 197403940 197403940 A T CRB1 Missense_Mutation p.R983W 0.17 deleterious(0.04) probably_damaging(0.937) TCGA-DD-AAC8-01 1 200818090 200818090 A T CAMSAP2 Silent p.P731P 0.15 TCGA-DD-AAC8-01 1 201047004 201047005 CA - CACNA1S Splice_Site p.X540_splice 0.12 TCGA-DD-AAC8-01 1 204945893 204945893 G T NFASC Missense_Mutation p.D601Y 0.18 deleterious(0.01) probably_damaging(0.988) TCGA-DD-AAC8-01 1 205353472 205353472 A T LEMD1 Silent p.T97T 0.16 TCGA-DD-AAC8-01 1 205898402 205898402 A T SLC26A9 Missense_Mutation p.V267E 0.58 deleterious(0) possibly_damaging(0.471) TCGA-DD-AAC8-01 1 207753643 207753643 C G CR1 Missense_Mutation p.N1665K 0.13 tolerated(0.7) benign(0.027) TCGA-DD-AAC8-01 1 213146157 213146157 A G VASH2 Missense_Mutation p.K201E 0.07 deleterious(0) benign(0.165) TCGA-DD-AAC8-01 1 215408460 215408460 A G KCNK2 Missense_Mutation p.E418G 0.09 deleterious_low_confidence(0) benign(0.045) TCGA-DD-AAC8-01 1 220253130 220253130 T A BPNT1 Missense_Mutation p.Q20L 0.09 tolerated(0.19) benign(0.089) TCGA-DD-AAC8-01 1 222801852 222801852 A T MIA3 Silent p.S430S 0.14 TCGA-DD-AAC8-01 1 228246857 228246857 C T WNT3A Silent p.R250R 0.09 TCGA-DD-AAC8-01 1 228345591 228345591 G C GJC2 Missense_Mutation p.E44D 0.11 deleterious(0) probably_damaging(0.992) TCGA-DD-AAC8-01 1 228521428 228521428 A T OBSCN Missense_Mutation p.Y6291F 0.13 probably_damaging(0.997) TCGA-DD-AAC8-01 1 228552712 228552712 T A OBSCN Missense_Mutation p.L7248H 0.12 probably_damaging(0.997) TCGA-DD-AAC8-01 1 22973727 22973727 A T C1QC Silent p.P63P 0.43 TCGA-DD-AAC8-01 1 231299389 231299389 A T TRIM67 Missense_Mutation p.Q225L 0.14 deleterious(0.02) probably_damaging(0.953) TCGA-DD-AAC8-01 1 235904818 235904818 T A LYST Silent p.P2754P 0.14 TCGA-DD-AAC8-01 1 237551411 237551411 T A RYR2 Missense_Mutation p.L234H 0.12 benign(0.039) TCGA-DD-AAC8-01 1 237823356 237823356 T A RYR2 Nonsense_Mutation p.Y2760* 0.11 TCGA-DD-AAC8-01 1 241904820 241904820 T A WDR64 Missense_Mutation p.S432T 0.21 deleterious(0.01) probably_damaging(0.916) TCGA-DD-AAC8-01 1 2436080 2436080 A T PLCH2 3'UTR 0.36 TCGA-DD-AAC8-01 1 248202345 248202345 T A OR2L2 Missense_Mutation p.V259E 0.13 deleterious(0) benign(0.088) TCGA-DD-AAC8-01 1 248487043 248487043 T C OR2M7 Silent p.V276V 0.13 TCGA-DD-AAC8-01 1 248685400 248685400 C A OR2G6 Missense_Mutation p.S151R 0.26 deleterious(0.04) probably_damaging(0.939) TCGA-DD-AAC8-01 1 248845007 248845007 A T OR14I1 Missense_Mutation p.L200Q 0.11 deleterious(0.03) probably_damaging(0.967) TCGA-DD-AAC8-01 1 31210494 31210494 A T LAPTM5 Missense_Mutation p.M188K 0.45 deleterious(0) benign(0.401) TCGA-DD-AAC8-01 1 39799124 39799124 A T MACF1 Intron 0.33 TCGA-DD-AAC8-01 1 39823516 39823516 A T MACF1 Missense_Mutation p.K1903M 0.36 possibly_damaging(0.473) TCGA-DD-AAC8-01 1 46078849 46078861 GGCTCAGAAGAGG AGAGC NASP Frame_Shift_Del p.G479Rfs*3 0.81 TCGA-DD-AAC8-01 1 46078861 46078861 G C NASP Missense_Mutation p.D483H 0.78 deleterious(0) possibly_damaging(0.534) TCGA-DD-AAC8-01 1 53995547 53995547 A T GLIS1 Missense_Mutation p.Y292N 0.47 deleterious(0.03) probably_damaging(0.999) TCGA-DD-AAC8-01 1 57411614 57411614 T A C8B Missense_Mutation p.S329C 0.29 deleterious(0.01) possibly_damaging(0.823) TCGA-DD-AAC8-01 1 64676461 64676461 T A UBE2U Nonsense_Mutation p.L93* 0.36 TCGA-DD-AAC8-01 1 6524732 6524732 A T TNFRSF25 Missense_Mutation p.C115S 0.30 deleterious(0) probably_damaging(0.968) TCGA-DD-AAC8-01 1 75038865 75038865 T A C1orf173 Silent p.A843A 0.54 TCGA-DD-AAC8-01 1 78098739 78098739 T A ZZZ3 Missense_Mutation p.I101L 0.29 tolerated_low_confidence(0.58) benign(0) TCGA-DD-AAC8-01 1 78958823 78958823 A T PTGFR Missense_Mutation p.E132V 0.33 deleterious(0) probably_damaging(1) TCGA-DD-AAC8-01 1 94508911 94508911 T A ABCA4 Missense_Mutation p.E1057D 0.49 tolerated(0.26) benign(0.042) TCGA-DD-AAC8-01 1 94577058 94577058 G T ABCA4 Missense_Mutation p.P80T 0.41 tolerated(0.26) probably_damaging(1) TCGA-DD-AAC8-01 20 10033917 10033917 A G ANKEF1 Silent p.K676K 0.41 TCGA-DD-AAC8-01 20 18794625 18794625 A T SCP2D1 Missense_Mutation p.R56W 0.21 deleterious(0) possibly_damaging(0.85) TCGA-DD-AAC8-01 20 23476626 23476626 T A CST8 3'UTR 0.20 TCGA-DD-AAC8-01 20 3003398 3003398 A T PTPRA Silent p.T464T 0.21 TCGA-DD-AAC8-01 20 30539689 30539689 C - PDRG1 Frame_Shift_Del p.D26Tfs*19 0.19 TCGA-DD-AAC8-01 20 30795714 30795714 C T POFUT1 5'UTR 0.24 TCGA-DD-AAC8-01 20 31572988 31572988 T A SUN5 Missense_Mutation p.M301L 0.16 tolerated(1) benign(0.007) TCGA-DD-AAC8-01 20 31699282 31699282 T A BPIFB4 3'UTR 0.19 TCGA-DD-AAC8-01 20 31829908 31829908 T A BPIFA1 Missense_Mutation p.L238Q 0.12 deleterious(0) probably_damaging(0.954) TCGA-DD-AAC8-01 20 333979 333979 A T NRSN2 Silent p.A105A 0.19 TCGA-DD-AAC8-01 20 39993757 39993757 T G EMILIN3 Missense_Mutation p.I70L 0.18 tolerated(0.05) benign(0.043) TCGA-DD-AAC8-01 20 40127977 40127977 T A CHD6 Silent p.A291A 0.15 TCGA-DD-AAC8-01 20 52601945 52601945 T A BCAS1 Nonsense_Mutation p.K341* 0.26 TCGA-DD-AAC8-01 20 56188317 56188317 T A ZBP1 Missense_Mutation p.Q191L 0.21 deleterious(0) possibly_damaging(0.728) TCGA-DD-AAC8-01 20 57089884 57089884 T A APCDD1L 5'UTR 0.16 TCGA-DD-AAC8-01 20 58521263 58521263 C G FAM217B 3'UTR 0.27 TCGA-DD-AAC8-01 20 60909582 60909582 T A LAMA5 Missense_Mutation p.S860C 0.22 probably_damaging(0.984) TCGA-DD-AAC8-01 20 61537425 61537425 T A DIDO1 Nonsense_Mutation p.K468* 0.21 TCGA-DD-AAC8-01 21 10862891 10862891 G C IGHV1OR21-1 Missense_Mutation p.G63R 0.14 deleterious(0.03) possibly_damaging(0.849) TCGA-DD-AAC8-01 21 15561665 15561665 A T LIPI Missense_Mutation p.I62K 0.37 deleterious(0) benign(0.358) TCGA-DD-AAC8-01 21 15954542 15954542 A T SAMSN1 Missense_Mutation p.V59D 0.40 deleterious_low_confidence(0.03) benign(0.157) TCGA-DD-AAC8-01 21 27062287 27062287 T C JAM2 Splice_Site p.X81_splice 0.30 TCGA-DD-AAC8-01 21 27269958 27269958 T A APP Missense_Mutation p.E664V 0.28 tolerated(0.08) possibly_damaging(0.829) TCGA-DD-AAC8-01 21 31002945 31002945 A T GRIK1-AS2 3'UTR 0.40 TCGA-DD-AAC8-01 21 44192597 44192597 A T PDE9A Nonsense_Mutation p.R579* 0.42 TCGA-DD-AAC8-01 21 46685611 46685611 T C POFUT2 Intron 0.44 TCGA-DD-AAC8-01 22 19495303 19495303 A T CDC45 Missense_Mutation p.Q356L 0.41 deleterious(0) probably_damaging(0.978) TCGA-DD-AAC8-01 22 24629895 24629895 T A GGT5 Missense_Mutation p.Q84L 0.41 deleterious(0) probably_damaging(0.999) TCGA-DD-AAC8-01 22 31536135 31536135 T A PLA2G3 Missense_Mutation p.Q69L 0.39 tolerated(0.32) benign(0.015) TCGA-DD-AAC8-01 22 32293526 32293526 A T DEPDC5 Missense_Mutation p.E1412V 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-DD-AAC8-01 22 37318309 37318309 C T CSF2RB Silent p.S20S 0.37 TCGA-DD-AAC8-01 22 38461007 38461007 A C PICK1 Splice_Site p.X52_splice 0.32 TCGA-DD-AAC8-01 22 44547368 44547368 C A PARVB Silent p.L293L 0.36 TCGA-DD-AAC8-01 22 50439576 50439576 A T IL17REL Missense_Mutation p.M15K 0.39 deleterious(0) possibly_damaging(0.75) TCGA-DD-AAC8-01 2 103061692 103061692 A T IL18RAP Missense_Mutation p.I322F 0.23 tolerated(0.74) benign(0.006) TCGA-DD-AAC8-01 2 103148873 103148873 A T SLC9A4 Missense_Mutation p.Q708L 0.24 tolerated(0.11) benign(0.033) TCGA-DD-AAC8-01 2 109347864 109347864 A T RANBP2 Missense_Mutation p.R113S 0.24 tolerated(0.07) benign(0.022) TCGA-DD-AAC8-01 2 109964388 109964388 T A SH3RF3 Missense_Mutation p.C278S 0.17 deleterious(0) probably_damaging(1) TCGA-DD-AAC8-01 2 112630592 112630592 A C ANAPC1 Intron 0.18 TCGA-DD-AAC8-01 2 114004421 114004421 A T PAX8 Missense_Mutation p.I34N 0.23 deleterious(0) probably_damaging(1) TCGA-DD-AAC8-01 2 128249661 128249661 G A IWS1 Missense_Mutation p.P645S 0.24 deleterious(0.04) probably_damaging(0.988) TCGA-DD-AAC8-01 2 128747139 128747139 T A SAP130 Silent p.S619S 0.32 TCGA-DD-AAC8-01 2 130737524 130737524 T A RAB6C 5'UTR 0.22 TCGA-DD-AAC8-01 2 132021790 132021790 T A POTEE Missense_Mutation p.L921Q 0.17 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-DD-AAC8-01 2 136609093 136609093 T A MCM6 Missense_Mutation p.K599I 0.24 deleterious(0.02) possibly_damaging(0.845) TCGA-DD-AAC8-01 2 152236098 152236098 T A TNFAIP6 3'UTR 0.29 TCGA-DD-AAC8-01 2 160803186 160803186 A T PLA2R1 Intron 0.25 TCGA-DD-AAC8-01 2 169688005 169688005 A T NOSTRIN Silent p.T122T 0.23 TCGA-DD-AAC8-01 2 170355994 170355994 A T BBS5 Splice_Site p.X228_splice 0.31 TCGA-DD-AAC8-01 2 170591706 170591706 A T KLHL23 Missense_Mutation p.Y61F 0.28 tolerated(0.06) probably_damaging(0.998) TCGA-DD-AAC8-01 2 172300031 172300031 A T DCAF17 Splice_Site p.X77_splice 0.28 TCGA-DD-AAC8-01 2 175432711 175432711 A T WIPF1 Missense_Mutation p.V407E 0.30 tolerated(0.07) benign(0.102) TCGA-DD-AAC8-01 2 175939359 175939359 T A ATF2 Missense_Mutation p.Q499L 0.25 deleterious(0) benign(0.018) TCGA-DD-AAC8-01 2 178098800 178098800 T C NFE2L2 Missense_Mutation p.E82G 0.51 deleterious(0) probably_damaging(1) TCGA-DD-AAC8-01 2 179417476 179417476 A T TTN Missense_Mutation p.W30051R 0.32 TCGA-DD-AAC8-01 2 179439715 179439715 A T TTN Missense_Mutation p.V23715D 0.37 TCGA-DD-AAC8-01 2 179575489 179575489 A T TTN Silent p.I9445I 0.26 TCGA-DD-AAC8-01 2 179612800 179612800 A T TTN Intron 0.28 TCGA-DD-AAC8-01 2 187605125 187605125 A G FAM171B Missense_Mutation p.I137V 0.21 tolerated(0.74) benign(0.058) TCGA-DD-AAC8-01 2 189870090 189870090 A T COL3A1 Missense_Mutation p.K982N 0.22 probably_damaging(0.998) TCGA-DD-AAC8-01 2 191897687 191897687 C G STAT4 Missense_Mutation p.E681Q 0.53 deleterious(0.01) possibly_damaging(0.88) TCGA-DD-AAC8-01 2 202002974 202002974 A G CFLAR Intron 0.25 TCGA-DD-AAC8-01 2 20212202 20212202 C T MATN3 Missense_Mutation p.G64E 0.66 tolerated(0.47) benign(0.002) TCGA-DD-AAC8-01 2 202131378 202131378 A T CASP8 Missense_Mutation p.S116C 0.28 deleterious(0.01) possibly_damaging(0.525) TCGA-DD-AAC8-01 2 202900427 202900427 T A FZD7 Missense_Mutation p.W353R 0.26 deleterious(0) probably_damaging(1) TCGA-DD-AAC8-01 2 202900508 202900508 T A FZD7 Missense_Mutation p.Y380N 0.16 deleterious(0) probably_damaging(0.999) TCGA-DD-AAC8-01 2 204820588 204820588 A G ICOS Silent p.L96L 0.28 TCGA-DD-AAC8-01 2 20647467 20647467 C T RHOB Missense_Mutation p.L81F 0.23 deleterious(0.03) possibly_damaging(0.629) TCGA-DD-AAC8-01 2 207436449 207436449 A T ADAM23 Splice_Site p.X523_splice 0.31 TCGA-DD-AAC8-01 2 207656548 207656548 A T FASTKD2 3'UTR 0.19 TCGA-DD-AAC8-01 2 210559831 210559831 A T MAP2 Missense_Mutation p.K979N 0.27 tolerated_low_confidence(0.14) benign(0.102) TCGA-DD-AAC8-01 2 215440464 215440464 A T VWC2L Missense_Mutation p.I197F 0.32 deleterious(0.05) possibly_damaging(0.864) TCGA-DD-AAC8-01 2 218924420 218924420 T A CXCR2P1 RNA 0.26 TCGA-DD-AAC8-01 2 220405024 220405024 T A CHPF Missense_Mutation p.E470V 0.29 deleterious(0.01) benign(0.18) TCGA-DD-AAC8-01 2 230638852 230638852 A G TRIP12 Silent p.D1810D 0.30 TCGA-DD-AAC8-01 2 230663717 230663717 C A TRIP12 Missense_Mutation p.S1044I 0.34 deleterious(0) benign(0.23) TCGA-DD-AAC8-01 2 233244624 233244624 T A ALPP Missense_Mutation p.L212H 0.28 deleterious(0) probably_damaging(1) TCGA-DD-AAC8-01 2 233245981 233245981 C T ALPP Missense_Mutation p.R405W 0.08 deleterious(0.03) benign(0.014) TCGA-DD-AAC8-01 2 233274062 233274062 C T ALPPL2 Missense_Mutation p.R402W 0.30 deleterious(0.03) benign(0.001) TCGA-DD-AAC8-01 2 242615449 242615449 G A DTYMK 3'UTR 0.33 TCGA-DD-AAC8-01 2 27438566 27438566 A T ATRAID Silent p.I199I 0.30 TCGA-DD-AAC8-01 2 30966407 30966407 C T CAPN13 Silent p.S429S 0.26 TCGA-DD-AAC8-01 2 31606664 31606664 T A XDH Silent p.P281P 0.38 TCGA-DD-AAC8-01 2 32661167 32661167 A T BIRC6 Silent p.L1182L 0.31 TCGA-DD-AAC8-01 2 32858993 32858993 A T TTC27 Missense_Mutation p.Q106L 0.24 deleterious(0) probably_damaging(0.964) TCGA-DD-AAC8-01 2 3358335 3358335 T A TSSC1 Nonsense_Mutation p.K38* 0.28 TCGA-DD-AAC8-01 2 42720359 42720359 A T KCNG3 Missense_Mutation p.Y95N 0.28 tolerated(0.21) probably_damaging(0.999) TCGA-DD-AAC8-01 2 47132513 47132513 T A MCFD2 3'UTR 0.21 TCGA-DD-AAC8-01 2 54891657 54891657 A T SPTBN1 Missense_Mutation p.E2163V 0.28 tolerated(0.14) benign(0.045) TCGA-DD-AAC8-01 2 62733216 62733216 C T TMEM17 Missense_Mutation p.A17T 0.33 tolerated(0.94) benign(0) TCGA-DD-AAC8-01 2 67637305 67637305 A T ETAA1 3'UTR 0.29 TCGA-DD-AAC8-01 2 69585596 69585596 C T GFPT1 Splice_Site p.X137_splice 0.31 TCGA-DD-AAC8-01 2 71661921 71661921 A T ZNF638 Missense_Mutation p.E1974V 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DD-AAC8-01 2 74867347 74867347 T A M1AP Missense_Mutation p.Q19L 0.22 deleterious(0.01) benign(0.371) TCGA-DD-AAC8-01 2 86305011 86305011 T A POLR1A Missense_Mutation p.I451F 0.19 deleterious(0.04) possibly_damaging(0.582) TCGA-DD-AAC8-01 2 90108534 90108534 T A IGKV6D-41 Missense_Mutation p.V2E 0.26 tolerated(0.77) benign(0.147) TCGA-DD-AAC8-01 2 99006230 99006230 A C CNGA3 Missense_Mutation p.I187L 0.27 deleterious(0.03) benign(0.025) TCGA-DD-AAC8-01 3 105266289 105266289 A T ALCAM Silent p.T432T 0.26 TCGA-DD-AAC8-01 3 112262916 112262916 T A ATG3 Silent p.T127T 0.28 TCGA-DD-AAC8-01 3 112357260 112357260 T A CCDC80 Missense_Mutation p.Q498L 0.29 tolerated(0.07) possibly_damaging(0.885) TCGA-DD-AAC8-01 3 11303229 11303229 A G HRH1 3'UTR 0.54 TCGA-DD-AAC8-01 3 121186434 121186434 T A POLQ Missense_Mutation p.E2300V 0.37 tolerated(0.13) benign(0.319) TCGA-DD-AAC8-01 3 121251989 121251989 T A POLQ Missense_Mutation p.N270Y 0.26 deleterious(0) probably_damaging(1) TCGA-DD-AAC8-01 3 121256056 121256056 C G POLQ Splice_Site p.X211_splice 0.51 TCGA-DD-AAC8-01 3 121981126 121981126 G A CASR Missense_Mutation p.R415Q 0.16 deleterious(0.01) probably_damaging(0.955) TCGA-DD-AAC8-01 3 125872258 125872258 A T ALDH1L1 Intron 0.21 TCGA-DD-AAC8-01 3 127295719 127295719 G A TPRA1 Silent p.T121T 0.21 TCGA-DD-AAC8-01 3 127703119 127703119 T A KBTBD12 Nonstop_Mutation p.*624Kext*35 0.28 TCGA-DD-AAC8-01 3 128696958 128696958 T A KIAA1257 Missense_Mutation p.R246S 0.26 tolerated(0.06) benign(0.002) TCGA-DD-AAC8-01 3 129373861 129373861 T C TMCC1 Missense_Mutation p.M533V 0.30 deleterious(0.03) probably_damaging(0.994) TCGA-DD-AAC8-01 3 138007891 138007891 G T ARMC8 Missense_Mutation p.G594V 0.56 tolerated(0.53) benign(0.006) TCGA-DD-AAC8-01 3 138180931 138180931 T A ESYT3 Missense_Mutation p.D266E 0.26 tolerated(0.58) benign(0.002) TCGA-DD-AAC8-01 3 138461564 138461564 G A PIK3CB Missense_Mutation p.R153C 0.30 tolerated(0.11) benign(0.032) TCGA-DD-AAC8-01 3 140785482 140785482 T A SPSB4 Missense_Mutation p.V179E 0.18 deleterious(0) probably_damaging(0.967) TCGA-DD-AAC8-01 3 142188239 142188239 T A ATR Silent p.I2164I 0.26 TCGA-DD-AAC8-01 3 142278251 142278251 T A ATR Missense_Mutation p.K525M 0.27 tolerated_low_confidence(0.08) benign(0.235) TCGA-DD-AAC8-01 3 150690482 150690482 T A CLRN1 Missense_Mutation p.Q5L 0.25 tolerated(1) probably_damaging(0.925) TCGA-DD-AAC8-01 3 161221107 161221107 A T OTOL1 Missense_Mutation p.S271C 0.27 tolerated(0.19) unknown(0) TCGA-DD-AAC8-01 3 164732917 164732917 C A SI Missense_Mutation p.W1331C 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-DD-AAC8-01 3 168834399 168834399 T A MECOM Missense_Mutation p.N298Y 0.36 deleterious(0) probably_damaging(0.997) TCGA-DD-AAC8-01 3 171443814 171443814 T A PLD1 Missense_Mutation p.K220M 0.25 deleterious(0) probably_damaging(0.993) TCGA-DD-AAC8-01 3 184290454 184290454 T A EPHB3 Missense_Mutation p.C116S 0.30 deleterious(0) probably_damaging(1) TCGA-DD-AAC8-01 3 185390424 185390424 T A IGF2BP2 Missense_Mutation p.S369C 0.25 deleterious(0.05) possibly_damaging(0.711) TCGA-DD-AAC8-01 3 185797835 185797835 G C ETV5 Missense_Mutation p.L141V 0.34 tolerated(1) benign(0.002) TCGA-DD-AAC8-01 3 186459911 186459911 A G KNG1 Missense_Mutation p.I576V 0.22 tolerated(0.64) benign(0.006) TCGA-DD-AAC8-01 3 194877312 194877312 T A XXYLT1 Splice_Site p.X218_splice 0.21 TCGA-DD-AAC8-01 3 24003466 24003466 A T NR1D2 Splice_Site p.X173_splice 0.23 TCGA-DD-AAC8-01 3 27478916 27478916 T A SLC4A7 Nonsense_Mutation p.R122* 0.31 TCGA-DD-AAC8-01 3 33840379 33840379 A T PDCD6IP Silent p.A53A 0.29 TCGA-DD-AAC8-01 3 37327513 37327513 A T GOLGA4 Silent p.T184T 0.25 TCGA-DD-AAC8-01 3 41266103 41266103 G C CTNNB1 Missense_Mutation p.G34R 0.32 deleterious(0) probably_damaging(0.997) TCGA-DD-AAC8-01 3 42735312 42735312 T A HHATL Splice_Site p.X349_splice 0.30 TCGA-DD-AAC8-01 3 42751273 42751273 T A CCDC13 Missense_Mutation p.N631Y 0.24 deleterious(0.02) benign(0.169) TCGA-DD-AAC8-01 3 44685446 44685446 A T ZNF197 Nonsense_Mutation p.K942* 0.28 TCGA-DD-AAC8-01 3 46308011 46308011 T A CCR3 3'UTR 0.27 TCGA-DD-AAC8-01 3 48455080 48455080 T A PLXNB1 Missense_Mutation p.R1512W 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-DD-AAC8-01 3 48685300 48685300 T A CELSR3 Missense_Mutation p.Q2368L 0.20 tolerated(0.17) benign(0.098) TCGA-DD-AAC8-01 3 49006053 49006053 A C ARIH2 Missense_Mutation p.K209Q 0.24 deleterious(0.01) possibly_damaging(0.455) TCGA-DD-AAC8-01 3 49070097 49070097 G A QRICH1 Missense_Mutation p.R669W 0.06 deleterious(0) probably_damaging(1) TCGA-DD-AAC8-01 3 49570032 49570032 A T DAG1 Silent p.L696L 0.24 TCGA-DD-AAC8-01 3 51264732 51264732 T A DOCK3 Missense_Mutation p.S466T 0.31 tolerated(0.08) benign(0.057) TCGA-DD-AAC8-01 3 53263101 53263101 T A TKT Silent p.S447S 0.22 TCGA-DD-AAC8-01 3 58112352 58112352 G T FLNB Missense_Mutation p.G1362V 0.52 deleterious(0) probably_damaging(1) TCGA-DD-AAC8-01 3 63973873 63973873 A T ATXN7 Missense_Mutation p.R412W 0.26 deleterious(0) probably_damaging(0.997) TCGA-DD-AAC8-01 3 65425648 65425648 T C MAGI1 Silent p.L392L 0.17 TCGA-DD-AAC8-01 3 88042851 88042851 A T HTR1F 3'UTR 0.31 TCGA-DD-AAC8-01 3 89156892 89156892 C A EPHA3 5'UTR 0.17 TCGA-DD-AAC8-01 3 97686360 97686360 T A MINA Silent p.A26A 0.20 TCGA-DD-AAC8-01 3 97888085 97888085 C T OR5H15 Missense_Mutation p.T181I 0.32 tolerated(1) benign(0) TCGA-DD-AAC8-01 3 98216964 98216964 G A OR5K2 Missense_Mutation p.G147D 0.31 tolerated(0.2) probably_damaging(0.986) TCGA-DD-AAC8-01 4 104061192 104061192 T A CENPE Missense_Mutation p.K1986N 0.38 benign(0.015) TCGA-DD-AAC8-01 4 104511135 104511135 T A TACR3 Nonsense_Mutation p.K368* 0.40 TCGA-DD-AAC8-01 4 110915949 110915949 A C EGF Missense_Mutation p.D973A 0.29 tolerated(0.46) benign(0.003) TCGA-DD-AAC8-01 4 120463621 120463621 G T PDE5A Missense_Mutation p.T522K 0.34 deleterious(0) probably_damaging(0.96) TCGA-DD-AAC8-01 4 123246433 123246433 A T KIAA1109 Silent p.A3651A 0.39 TCGA-DD-AAC8-01 4 126370737 126370737 A T FAT4 Missense_Mutation p.T2856S 0.32 probably_damaging(0.999) TCGA-DD-AAC8-01 4 153690840 153690840 T A TIGD4 Silent p.I439I 0.44 TCGA-DD-AAC8-01 4 155156250 155156250 T A DCHS2 Missense_Mutation p.Q2730L 0.42 deleterious(0.02) benign(0.215) TCGA-DD-AAC8-01 4 155525396 155525396 G T FGG 3'Flank 0.41 TCGA-DD-AAC8-01 4 159603531 159603531 T G ETFDH Missense_Mutation p.D120E 0.29 tolerated(1) benign(0.001) TCGA-DD-AAC8-01 4 165962511 165962511 T - TRIM60 Frame_Shift_Del p.Y429* 0.26 TCGA-DD-AAC8-01 4 169369824 169369824 T C DDX60L Missense_Mutation p.N368S 0.32 tolerated(0.09) possibly_damaging(0.831) TCGA-DD-AAC8-01 4 184562451 184562451 A - RWDD4 3'UTR 0.27 TCGA-DD-AAC8-01 4 3424630 3424630 A T RGS12 Splice_Site p.X1012_splice 0.45 TCGA-DD-AAC8-01 4 4304448 4304448 A T ZBTB49 Missense_Mutation p.Q295H 0.40 tolerated(0.53) benign(0.016) TCGA-DD-AAC8-01 4 52860981 52860981 T A LRRC66 Missense_Mutation p.Q736L 0.37 tolerated(0.12) benign(0.035) TCGA-DD-AAC8-01 4 5500757 5500757 G C STK32B Missense_Mutation p.G398R 0.35 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-DD-AAC8-01 4 5800323 5800323 T A EVC Missense_Mutation p.V703E 0.43 deleterious(0) probably_damaging(0.952) TCGA-DD-AAC8-01 4 68357970 68357970 C G CENPC Missense_Mutation p.G815R 0.50 deleterious(0.01) benign(0.031) TCGA-DD-AAC8-01 4 6925360 6925360 A T TBC1D14 Missense_Mutation p.S82C 0.49 deleterious_low_confidence(0.01) possibly_damaging(0.711) TCGA-DD-AAC8-01 4 72994540 72994540 A G NPFFR2 Missense_Mutation p.T180A 0.35 deleterious(0) probably_damaging(0.999) TCGA-DD-AAC8-01 4 73181644 73181644 A T ADAMTS3 Silent p.P510P 0.34 TCGA-DD-AAC8-01 4 79366793 79366793 A G FRAS1 Missense_Mutation p.H1928R 0.38 benign(0.067) TCGA-DD-AAC8-01 4 79455718 79455718 A T FRAS1 Missense_Mutation p.T3681S 0.35 benign(0.086) TCGA-DD-AAC8-01 4 87638220 87638220 T A PTPN13 Silent p.G445G 0.45 TCGA-DD-AAC8-01 4 92519745 92519745 T A CCSER1 Missense_Mutation p.V747E 0.40 deleterious_low_confidence(0.04) possibly_damaging(0.882) TCGA-DD-AAC8-01 5 110081977 110081977 A T SLC25A46 Missense_Mutation p.Y131F 0.37 tolerated(0.2) benign(0.358) TCGA-DD-AAC8-01 5 131323886 131323886 T A ACSL6 Missense_Mutation p.Q229L 0.21 deleterious(0.03) benign(0.038) TCGA-DD-AAC8-01 5 132032303 132032303 T A KIF3A 3'UTR 0.19 TCGA-DD-AAC8-01 5 132440241 132440241 G A HSPA4 3'UTR 0.32 TCGA-DD-AAC8-01 5 134332053 134332053 A T CATSPER3 Missense_Mutation p.N115Y 0.12 deleterious(0) probably_damaging(0.978) TCGA-DD-AAC8-01 5 137756438 137756438 A T KDM3B Silent p.S1253S 0.22 TCGA-DD-AAC8-01 5 13920675 13920675 T C DNAH5 Missense_Mutation p.T238A 0.25 benign(0) TCGA-DD-AAC8-01 5 13928204 13928204 T A DNAH5 Silent p.T92T 0.23 TCGA-DD-AAC8-01 5 13931352 13931352 T A DNAH5 Missense_Mutation p.Q20L 0.23 benign(0.069) TCGA-DD-AAC8-01 5 139725617 139725617 T A HBEGF Silent p.L33L 0.19 TCGA-DD-AAC8-01 5 140481325 140481325 A T PCDHB3 Silent p.V364V 0.25 TCGA-DD-AAC8-01 5 140531957 140531957 G T PCDHB6 Missense_Mutation p.V707L 0.16 deleterious(0.02) benign(0.104) TCGA-DD-AAC8-01 5 140552882 140552882 A T PCDHB7 Missense_Mutation p.S156C 0.18 tolerated_low_confidence(0.16) benign(0.008) TCGA-DD-AAC8-01 5 140581442 140581442 T A PCDHB11 Missense_Mutation p.S699T 0.25 deleterious_low_confidence(0.04) benign(0.341) TCGA-DD-AAC8-01 5 140744248 140744248 T A PCDHGA5 Nonsense_Mutation p.Y117* 0.22 TCGA-DD-AAC8-01 5 140865877 140865877 A T PCDHGC4 Silent p.S379S 0.22 TCGA-DD-AAC8-01 5 149676796 149676796 A T ARSI Missense_Mutation p.L564Q 0.22 deleterious_low_confidence(0) possibly_damaging(0.467) TCGA-DD-AAC8-01 5 150933925 150933925 T A FAT2 Missense_Mutation p.T1315S 0.14 probably_damaging(0.926) TCGA-DD-AAC8-01 5 153085377 153085377 A T GRIA1 Nonsense_Mutation p.K535* 0.21 TCGA-DD-AAC8-01 5 158585665 158585665 T A RNF145 3'UTR 0.38 TCGA-DD-AAC8-01 5 15936796 15936796 T A FBXL7 Missense_Mutation p.I326N 0.16 deleterious(0) benign(0.365) TCGA-DD-AAC8-01 5 160071197 160071197 T A ATP10B Silent p.R272R 0.22 TCGA-DD-AAC8-01 5 169174411 169174411 G A DOCK2 Missense_Mutation p.G760D 0.23 tolerated(0.23) benign(0.013) TCGA-DD-AAC8-01 5 170215599 170215599 T A GABRP 5'UTR 0.15 TCGA-DD-AAC8-01 5 172744922 172744922 A T STC2 Silent p.L279L 0.25 TCGA-DD-AAC8-01 5 178541069 178541069 A T ADAMTS2 Missense_Mutation p.N1145K 0.17 tolerated(0.67) benign(0.206) TCGA-DD-AAC8-01 5 179016569 179016569 T C RUFY1 Missense_Mutation p.I350T 0.24 deleterious(0) benign(0.363) TCGA-DD-AAC8-01 5 180219134 180219134 C G MGAT1 Missense_Mutation p.E280Q 0.24 possibly_damaging(0.718) TCGA-DD-AAC8-01 5 35874564 35874564 T A IL7R Silent p.P240P 0.32 TCGA-DD-AAC8-01 5 37835590 37835590 T C GDNF Intron 0.32 TCGA-DD-AAC8-01 5 39130702 39130702 A T FYB Missense_Mutation p.S620R 0.23 deleterious(0.01) probably_damaging(0.914) TCGA-DD-AAC8-01 5 41048467 41048467 A T MROH2B Missense_Mutation p.L548Q 0.21 deleterious(0.01) benign(0.381) TCGA-DD-AAC8-01 5 43454119 43454119 T A C5orf28 5'UTR 0.30 TCGA-DD-AAC8-01 5 54429246 54429246 C G CDC20B Missense_Mutation p.D231H 0.15 deleterious(0) probably_damaging(0.99) TCGA-DD-AAC8-01 5 54429259 54429259 A T CDC20B Silent p.T226T 0.17 TCGA-DD-AAC8-01 5 55204371 55204371 A T IL31RA Intron 0.19 TCGA-DD-AAC8-01 5 55407265 55407265 A T ANKRD55 Missense_Mutation p.L437H 0.15 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-DD-AAC8-01 5 59899387 59899387 T A DEPDC1B Missense_Mutation p.Q358L 0.24 tolerated(0.06) possibly_damaging(0.694) TCGA-DD-AAC8-01 5 68715848 68715848 A T MARVELD2 Silent p.T212T 0.21 TCGA-DD-AAC8-01 5 71411599 71411599 T A MAP1B Missense_Mutation p.S87T 0.18 unknown(0) TCGA-DD-AAC8-01 5 71491824 71491824 A T MAP1B Missense_Mutation p.E881V 0.23 possibly_damaging(0.852) TCGA-DD-AAC8-01 5 74101006 74101006 T A FAM169A Missense_Mutation p.L258F 0.15 tolerated(0.06) possibly_damaging(0.477) TCGA-DD-AAC8-01 5 89992795 89992795 T A GPR98 Missense_Mutation p.S2663T 0.16 benign(0.402) TCGA-DD-AAC8-01 5 94230454 94230454 A T MCTP1 Missense_Mutation p.L580Q 0.19 deleterious(0) probably_damaging(0.993) TCGA-DD-AAC8-01 5 94353130 94353130 A T MCTP1 Missense_Mutation p.M260K 0.19 tolerated(0.06) possibly_damaging(0.597) TCGA-DD-AAC8-01 5 95297500 95297500 T G ELL2 5'UTR 0.30 TCGA-DD-AAC8-01 5 96329587 96329587 A T LNPEP Missense_Mutation p.E440V 0.27 deleterious(0) probably_damaging(1) TCGA-DD-AAC8-01 6 108093559 108093559 A T SCML4 5'UTR 0.35 TCGA-DD-AAC8-01 6 123851680 123851680 T A TRDN Missense_Mutation p.E152V 0.37 deleterious_low_confidence(0) unknown(0) TCGA-DD-AAC8-01 6 127837602 127837602 G T SOGA3 Missense_Mutation p.T53K 0.47 deleterious_low_confidence(0.02) benign(0.005) TCGA-DD-AAC8-01 6 135644338 135644338 T A AHI1 Missense_Mutation p.Q1097L 0.35 tolerated(0.08) possibly_damaging(0.699) TCGA-DD-AAC8-01 6 147136414 147136414 T A ADGB 3'UTR 0.37 TCGA-DD-AAC8-01 6 152651184 152651184 C A SYNE1 Missense_Mutation p.C4879F 0.29 probably_damaging(0.999) TCGA-DD-AAC8-01 6 155458554 155458554 A T TIAM2 Missense_Mutation p.T480S 0.34 tolerated(0.32) benign(0.014) TCGA-DD-AAC8-01 6 157100005 157100005 C A ARID1B Silent p.G314G 0.11 TCGA-DD-AAC8-01 6 28499588 28499588 A G GPX5 Missense_Mutation p.Y92C 0.69 tolerated(0.17) benign(0.002) TCGA-DD-AAC8-01 6 28540129 28540129 A T SCAND3 Missense_Mutation p.S1179R 0.70 tolerated_low_confidence(0.54) benign(0.015) TCGA-DD-AAC8-01 6 29797324 29797324 A T HLA-G Missense_Mutation p.Q250L 0.67 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-DD-AAC8-01 6 31084505 31084505 T A CDSN Missense_Mutation p.Y296F 0.75 deleterious_low_confidence(0) unknown(0) TCGA-DD-AAC8-01 6 32134215 32134215 T C EGFL8 Intron 0.74 TCGA-DD-AAC8-01 6 43526298 43526298 T A XPO5 Missense_Mutation p.S418C 0.73 deleterious(0) probably_damaging(0.957) TCGA-DD-AAC8-01 6 44116248 44116248 A T TMEM63B Splice_Site p.X374_splice 0.18 TCGA-DD-AAC8-01 6 47202430 47202430 T A TNFRSF21 Missense_Mutation p.R572W 0.12 deleterious(0) probably_damaging(0.976) TCGA-DD-AAC8-01 6 47650129 47650129 T A GPR111 Missense_Mutation p.L612M 0.19 deleterious(0.03) probably_damaging(1) TCGA-DD-AAC8-01 6 74502490 74502490 A C CD109 Missense_Mutation p.N948T 0.31 tolerated(0.13) benign(0.004) TCGA-DD-AAC8-01 6 82921267 82921267 T A IBTK Missense_Mutation p.M772L 0.36 tolerated(1) benign(0.009) TCGA-DD-AAC8-01 6 88375515 88375515 A C ORC3 Missense_Mutation p.N666T 0.40 deleterious(0.01) benign(0.008) TCGA-DD-AAC8-01 6 99286575 99286575 T A POU3F2 3'UTR 0.36 TCGA-DD-AAC8-01 7 100212969 100212969 A T MOSPD3 3'UTR 0.32 TCGA-DD-AAC8-01 7 100677847 100677847 C T MUC17 Silent p.S1050S 0.24 TCGA-DD-AAC8-01 7 100807423 100807423 A T VGF Silent p.R234R 0.19 TCGA-DD-AAC8-01 7 102574534 102574534 A T LRRC17 Silent p.T58T 0.29 TCGA-DD-AAC8-01 7 11080358 11080358 A T PHF14 Missense_Mutation p.E712D 0.27 tolerated(0.21) possibly_damaging(0.675) TCGA-DD-AAC8-01 7 114299675 114299675 A T FOXP2 Missense_Mutation p.S557C 0.22 deleterious(0) unknown(0) TCGA-DD-AAC8-01 7 117060261 117060261 T C ASZ1 Silent p.V132V 0.29 TCGA-DD-AAC8-01 7 12409623 12409623 G A VWDE Missense_Mutation p.T770M 0.29 tolerated(0.07) benign(0.083) TCGA-DD-AAC8-01 7 132192611 132192611 A T PLXNA4 Missense_Mutation p.V281E 0.35 deleterious(0) probably_damaging(0.999) TCGA-DD-AAC8-01 7 140171777 140171777 T A MKRN1 Missense_Mutation p.N74Y 0.20 deleterious(0) probably_damaging(0.995) TCGA-DD-AAC8-01 7 142459633 142459633 A T PRSS1 Missense_Mutation p.Q70L 0.15 deleterious(0.02) benign(0.063) TCGA-DD-AAC8-01 7 142609803 142609803 C A TRPV5 Missense_Mutation p.A545S 0.60 deleterious(0.01) probably_damaging(0.991) TCGA-DD-AAC8-01 7 143772118 143772118 A T OR2A25 Missense_Mutation p.Q269L 0.30 tolerated(0.05) benign(0.291) TCGA-DD-AAC8-01 7 146825821 146825821 A T CNTNAP2 Missense_Mutation p.S326C 0.23 tolerated(0.11) possibly_damaging(0.886) TCGA-DD-AAC8-01 7 150643965 150643965 C A KCNH2 Missense_Mutation p.Q1110H 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.648) TCGA-DD-AAC8-01 7 16832566 16832566 T C AGR2 Missense_Mutation p.K165R 0.20 tolerated(0.07) benign(0.001) TCGA-DD-AAC8-01 7 20198999 20198999 A T MACC1 Missense_Mutation p.Y329N 0.31 deleterious(0) possibly_damaging(0.86) TCGA-DD-AAC8-01 7 20371329 20371329 T A ITGB8 5'UTR 0.40 TCGA-DD-AAC8-01 7 29727191 29727191 C T DPY19L2P3 Intron 0.33 TCGA-DD-AAC8-01 7 36895067 36895067 C T ELMO1 3'UTR 0.57 TCGA-DD-AAC8-01 7 37936559 37936559 A T NME8 Silent p.A544A 0.22 TCGA-DD-AAC8-01 7 45614683 45614683 A T ADCY1 Missense_Mutation p.S181C 0.28 deleterious(0.02) possibly_damaging(0.619) TCGA-DD-AAC8-01 7 4959927 4959927 G T MMD2 Missense_Mutation p.N55K 0.30 tolerated(0.29) benign(0.029) TCGA-DD-AAC8-01 7 50132767 50132767 T A ZPBP Silent p.P8P 0.33 TCGA-DD-AAC8-01 7 55273271 55273271 A T EGFR Silent p.L1198L 0.20 TCGA-DD-AAC8-01 7 5632579 5632579 C A FSCN1 Missense_Mutation p.N4K 0.27 deleterious(0) benign(0.274) TCGA-DD-AAC8-01 7 6737036 6737036 T A ZNF12 Missense_Mutation p.S58C 0.29 deleterious(0.04) benign(0.155) TCGA-DD-AAC8-01 7 72745693 72745693 C A FKBP6 Missense_Mutation p.L168M 0.49 tolerated(0.06) probably_damaging(0.988) TCGA-DD-AAC8-01 7 76112038 76112038 A T DTX2 Missense_Mutation p.Q161L 0.32 deleterious(0) probably_damaging(0.998) TCGA-DD-AAC8-01 7 76143358 76143358 A C UPK3B Missense_Mutation p.T241P 0.35 deleterious_low_confidence(0.03) benign(0.018) TCGA-DD-AAC8-01 7 81603834 81603834 T G CACNA2D1 Missense_Mutation p.N664H 0.05 deleterious(0) probably_damaging(0.989) TCGA-DD-AAC8-01 7 82544071 82544071 T C PCLO Missense_Mutation p.T4411A 0.20 unknown(0) TCGA-DD-AAC8-01 7 83689783 83689783 A G SEMA3A Missense_Mutation p.I182T 0.23 tolerated(0.5) benign(0.429) TCGA-DD-AAC8-01 7 84649627 84649627 A T SEMA3D Silent p.T475T 0.27 TCGA-DD-AAC8-01 7 94055788 94055788 A T COL1A2 Missense_Mutation p.R1017S 0.26 unknown(0) TCGA-DD-AAC8-01 7 98786068 98786068 T A KPNA7 Missense_Mutation p.H252L 0.20 tolerated(0.06) possibly_damaging(0.565) TCGA-DD-AAC8-01 8 11177226 11177226 G A MTMR9 Missense_Mutation p.M455I 0.18 tolerated(0.42) benign(0) TCGA-DD-AAC8-01 8 113599330 113599330 T A CSMD3 Nonsense_Mutation p.R1284* 0.18 TCGA-DD-AAC8-01 8 125103790 125103790 T C FER1L6 Silent p.F1506F 0.51 TCGA-DD-AAC8-01 8 133895200 133895200 A T TG Missense_Mutation p.K344M 0.15 deleterious(0) possibly_damaging(0.879) TCGA-DD-AAC8-01 8 133899402 133899402 A T TG Missense_Mutation p.L595F 0.14 tolerated(0.07) probably_damaging(0.971) TCGA-DD-AAC8-01 8 133913655 133913655 G T TG Missense_Mutation p.G1164V 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-DD-AAC8-01 8 143961039 143961039 A T CYP11B1 Missense_Mutation p.L64Q 0.23 deleterious(0) probably_damaging(0.983) TCGA-DD-AAC8-01 8 144681526 144681526 T G TIGD5 Missense_Mutation p.F485V 0.54 deleterious(0) probably_damaging(0.998) TCGA-DD-AAC8-01 8 145738779 145738779 C T RECQL4 Silent p.Q762Q 0.09 TCGA-DD-AAC8-01 8 20068078 20068078 A T ATP6V1B2 Splice_Site p.X129_splice 0.22 TCGA-DD-AAC8-01 8 2027014 2027014 G T MYOM2 Missense_Mutation p.A488S 0.36 tolerated(0.31) benign(0.156) TCGA-DD-AAC8-01 8 27729412 27729412 T A SCARA5 3'UTR 0.38 TCGA-DD-AAC8-01 8 2806902 2806902 A T CSMD1 Missense_Mutation p.S3441T 0.26 possibly_damaging(0.469) TCGA-DD-AAC8-01 8 48746959 48746959 T A PRKDC Splice_Site p.X2650_splice 0.27 TCGA-DD-AAC8-01 8 48826590 48826594 CACAT A PRKDC Frame_Shift_Del p.Y883Lfs*9 0.55 TCGA-DD-AAC8-01 8 48973492 48973492 A T UBE2V2 3'UTR 0.54 TCGA-DD-AAC8-01 8 494880 494880 T A TDRP Intron 0.20 TCGA-DD-AAC8-01 8 54142248 54142248 A T OPRK1 Missense_Mutation p.L251Q 0.15 deleterious(0.03) probably_damaging(0.984) TCGA-DD-AAC8-01 8 65528610 65528610 T A CYP7B1 Missense_Mutation p.Q163L 0.22 tolerated(0.77) possibly_damaging(0.762) TCGA-DD-AAC8-01 8 6690291 6690291 C T GS1-24F4.2 5'Flank 0.17 TCGA-DD-AAC8-01 8 67525370 67525370 T A MYBL1 5'UTR 0.62 TCGA-DD-AAC8-01 8 68211585 68211585 A C ARFGEF1 Silent p.L106L 0.57 TCGA-DD-AAC8-01 8 70591622 70591622 A T SLCO5A1 Missense_Mutation p.V672E 0.15 deleterious(0) probably_damaging(0.962) TCGA-DD-AAC8-01 8 72755724 72755724 T A RP11-383H13.1 Missense_Mutation p.L30M 0.38 unknown(0) TCGA-DD-AAC8-01 8 77617787 77617787 A C ZFHX4 Missense_Mutation p.L488F 0.17 possibly_damaging(0.765) TCGA-DD-AAC8-01 8 77766437 77766437 C T ZFHX4 Missense_Mutation p.P2427L 0.21 benign(0.009) TCGA-DD-AAC8-01 8 88886271 88886271 A T DCAF4L2 5'UTR 0.42 TCGA-DD-AAC8-01 8 95174341 95174341 A G CDH17 Silent p.D444D 0.72 TCGA-DD-AAC8-01 8 95539091 95539091 T A KIAA1429 Nonsense_Mutation p.K461* 0.42 TCGA-DD-AAC8-01 9 100116932 100116932 A T CCDC180 Silent p.I1072I 0.21 TCGA-DD-AAC8-01 9 109765689 109765689 A T ZNF462 Missense_Mutation p.S2391C 0.28 possibly_damaging(0.701) TCGA-DD-AAC8-01 9 113169638 113169638 T A SVEP1 Missense_Mutation p.I2748F 0.16 benign(0.195) TCGA-DD-AAC8-01 9 116798646 116798646 A T ZNF618 Missense_Mutation p.Q319L 0.22 deleterious_low_confidence(0) possibly_damaging(0.583) TCGA-DD-AAC8-01 9 125148941 125148941 A T PTGS1 Missense_Mutation p.N409I 0.23 deleterious(0) probably_damaging(1) TCGA-DD-AAC8-01 9 131012490 131012490 C T DNM1 Missense_Mutation p.R725C 0.26 deleterious(0.01) probably_damaging(1) TCGA-DD-AAC8-01 9 131469505 131469505 A T PKN3 Missense_Mutation p.Q219L 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-DD-AAC8-01 9 135374923 135374923 G A C9orf171 Missense_Mutation p.D190N 0.26 tolerated(0.36) benign(0.015) TCGA-DD-AAC8-01 9 135944545 135944545 A T CEL Silent p.P398P 0.20 TCGA-DD-AAC8-01 9 136905393 136905393 T A BRD3 Splice_Site p.X470_splice 0.15 TCGA-DD-AAC8-01 9 137023031 137023031 A T WDR5 Silent p.T307T 0.31 TCGA-DD-AAC8-01 9 140120486 140120486 G T C9orf169 Missense_Mutation p.C138F 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-DD-AAC8-01 9 140166672 140166672 A T NELFB Silent p.P495P 0.35 TCGA-DD-AAC8-01 9 16418994 16418994 A T BNC2 Missense_Mutation p.V1098E 0.19 deleterious_low_confidence(0) possibly_damaging(0.601) TCGA-DD-AAC8-01 9 21202098 21202098 C T IFNA7 Missense_Mutation p.G23S 0.23 tolerated(0.07) benign(0.285) TCGA-DD-AAC8-01 9 25677993 25677993 G A TUSC1 Silent p.S109S 0.17 TCGA-DD-AAC8-01 9 32632698 32632698 G T TAF1L Silent p.A960A 0.28 TCGA-DD-AAC8-01 9 32632699 32632699 G T TAF1L Missense_Mutation p.A960D 0.28 deleterious(0) probably_damaging(0.997) TCGA-DD-AAC8-01 9 336700 336700 T A DOCK8 Silent p.V468V 0.31 TCGA-DD-AAC8-01 9 35403468 35403468 A T UNC13B Silent p.T1454T 0.29 TCGA-DD-AAC8-01 9 35675916 35675916 A T CA9 Missense_Mutation p.N198Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-DD-AAC8-01 9 35707454 35707454 C A TLN1 Missense_Mutation p.R1555L 0.50 deleterious(0.04) probably_damaging(0.972) TCGA-DD-AAC8-01 9 43625043 43625043 T A SPATA31A6 Missense_Mutation p.K1215M 0.71 deleterious(0) possibly_damaging(0.757) TCGA-DD-AAC8-01 9 6592892 6592892 C A GLDC Missense_Mutation p.A454S 0.58 tolerated(0.75) benign(0.032) TCGA-DD-AAC8-01 9 72967257 72967257 A T SMC5 3'UTR 0.30 TCGA-DD-AAC8-01 9 8341889 8341889 T A PTPRD Missense_Mutation p.H1584L 0.21 deleterious(0) probably_damaging(0.996) TCGA-DD-AAC8-01 9 8636718 8636718 A C PTPRD Missense_Mutation p.V64G 0.05 deleterious(0) probably_damaging(0.992) TCGA-DD-AAC8-01 9 90296521 90296521 C T DAPK1 Missense_Mutation p.P735L 0.29 tolerated(0.23) benign(0.11) TCGA-DD-AAC8-01 9 91617383 91617383 T A S1PR3 3'UTR 0.28 TCGA-DD-AAC8-01 9 91994239 91994239 T A SEMA4D Missense_Mutation p.T657S 0.25 tolerated(0.19) benign(0.006) TCGA-DD-AAC8-01 9 93375673 93375673 G T DIRAS2 Missense_Mutation p.A146D 0.28 deleterious(0.01) benign(0.055) TCGA-DD-AAC8-01 9 95772649 95772649 A T FGD3 Missense_Mutation p.D320V 0.33 deleterious(0) probably_damaging(0.987) TCGA-DD-AAC8-01 X 100402946 100402946 C T CENPI Silent p.F630F 0.45 TCGA-DD-AAC8-01 X 100402947 100402947 A C CENPI Missense_Mutation p.N631H 0.44 tolerated(0.35) benign(0.332) TCGA-DD-AAC8-01 X 101823430 101823430 A T NXF4 RNA 0.35 TCGA-DD-AAC8-01 X 102338424 102338424 A T NXF3 Missense_Mutation p.Y148N 0.47 deleterious(0) probably_damaging(0.996) TCGA-DD-AAC8-01 X 103359030 103359030 T A ZCCHC18 Missense_Mutation p.S76R 0.33 deleterious(0.05) benign(0.047) TCGA-DD-AAC8-01 X 103499021 103499021 T A ESX1 Missense_Mutation p.K107M 0.40 deleterious_low_confidence(0.05) possibly_damaging(0.781) TCGA-DD-AAC8-01 X 105011036 105011036 A T IL1RAPL2 Missense_Mutation p.R481S 0.44 deleterious(0) probably_damaging(0.967) TCGA-DD-AAC8-01 X 107823970 107823970 T A COL4A5 Splice_Site p.X297_splice 0.44 TCGA-DD-AAC8-01 X 108631785 108631785 A T GUCY2F Silent p.S963S 0.39 TCGA-DD-AAC8-01 X 11204488 11204488 A T ARHGAP6 Missense_Mutation p.L381I 0.47 deleterious(0.02) probably_damaging(0.999) TCGA-DD-AAC8-01 X 117044023 117044023 C A KLHL13 Missense_Mutation p.A206S 0.33 deleterious(0.04) benign(0.247) TCGA-DD-AAC8-01 X 118230582 118230582 T A KIAA1210 Missense_Mutation p.S381C 0.49 deleterious(0) probably_damaging(0.971) TCGA-DD-AAC8-01 X 12840983 12840983 A T PRPS2 3'UTR 0.41 TCGA-DD-AAC8-01 X 12906214 12906214 T A TLR7 Missense_Mutation p.Y863N 0.53 deleterious(0) benign(0.314) TCGA-DD-AAC8-01 X 134185139 134185139 G T FAM127B 3'UTR 0.56 TCGA-DD-AAC8-01 X 134995190 134995190 A T SAGE1 3'UTR 0.36 TCGA-DD-AAC8-01 X 135431162 135431162 A T GPR112 Missense_Mutation p.Q1766L 0.44 deleterious(0) probably_damaging(0.994) TCGA-DD-AAC8-01 X 135498737 135498737 T A GPR112 3'UTR 0.41 TCGA-DD-AAC8-01 X 136113821 136113821 A T GPR101 Missense_Mutation p.C5S 0.39 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-DD-AAC8-01 X 142968077 142968077 T A UBE2NL 3'UTR 0.37 TCGA-DD-AAC8-01 X 151908775 151908775 T A CSAG1 Intron 0.43 TCGA-DD-AAC8-01 X 152845550 152845550 A T ATP2B3 Missense_Mutation p.T1153S 0.42 tolerated_low_confidence(0.54) benign(0.099) TCGA-DD-AAC8-01 X 1531641 1531641 G A ASMTL Silent p.A543A 0.19 TCGA-DD-AAC8-01 X 153631374 153631374 C T DNASE1L1 Missense_Mutation p.R228H 0.88 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AAC8-01 X 1742029 1742029 A T ASMT Intron 0.22 TCGA-DD-AAC8-01 X 1761943 1761943 A T ASMT 3'UTR 0.23 TCGA-DD-AAC8-01 X 18183181 18183181 A T BEND2 Missense_Mutation p.L783Q 0.41 tolerated(0.1) benign(0.026) TCGA-DD-AAC8-01 X 19418698 19418698 A T MAP3K15 Nonsense_Mutation p.L643* 0.22 TCGA-DD-AAC8-01 X 24665257 24665257 A T PCYT1B 5'UTR 0.33 TCGA-DD-AAC8-01 X 24757522 24757522 A T POLA1 Missense_Mutation p.T685S 0.41 tolerated(0.06) benign(0.41) TCGA-DD-AAC8-01 X 49965662 49965662 T A AKAP4 5'UTR 0.43 TCGA-DD-AAC8-01 X 50121586 50121586 C T DGKK RNA 0.36 TCGA-DD-AAC8-01 X 50377203 50377203 G T SHROOM4 Missense_Mutation p.Q624K 0.90 deleterious(0.02) benign(0.05) TCGA-DD-AAC8-01 X 53674399 53674399 T C HUWE1 Missense_Mutation p.Q88R 0.79 benign(0.012) TCGA-DD-AAC8-01 X 53674402 53674402 T C HUWE1 Missense_Mutation p.E87G 0.74 benign(0.012) TCGA-DD-AAC8-01 X 53674404 53674404 T C HUWE1 Silent p.R86R 0.74 TCGA-DD-AAC8-01 X 69748829 69748829 A T TEX11 3'UTR 0.46 TCGA-DD-AAC8-01 X 70072999 70072999 A T TEX11 Missense_Mutation p.L152Q 0.30 deleterious(0) probably_damaging(0.992) TCGA-DD-AAC8-01 X 71353838 71353838 A T NHSL2 Intron 0.33 TCGA-DD-AAC8-01 X 76872153 76872153 C G ATRX Missense_Mutation p.E1832Q 0.88 probably_damaging(1) TCGA-DD-AAC9-01 10 103369246 103369246 T C DPCD 3'UTR 0.06 TCGA-DD-AAC9-01 10 116623504 116623504 C T FAM160B1 3'UTR 0.19 TCGA-DD-AAC9-01 10 32833205 32833205 A G CCDC7 Missense_Mutation p.I370M 0.30 tolerated(0.34) benign(0.405) TCGA-DD-AAC9-01 10 93392752 93392752 A C PPP1R3C 5'UTR 0.30 TCGA-DD-AAC9-01 11 102935046 102935046 T A DCUN1D5 Missense_Mutation p.T206S 0.25 tolerated(0.18) benign(0.113) TCGA-DD-AAC9-01 11 109295085 109295085 C T C11orf87 3'UTR 0.05 TCGA-DD-AAC9-01 11 123777473 123777473 G A OR8D4 Missense_Mutation p.C112Y 0.22 deleterious(0) benign(0.025) TCGA-DD-AAC9-01 11 17496563 17496563 G A ABCC8 Nonsense_Mutation p.Q54* 0.20 TCGA-DD-AAC9-01 11 45672282 45672282 G A CHST1 Silent p.L64L 0.05 TCGA-DD-AAC9-01 11 55594822 55594822 T A OR5L2 Missense_Mutation p.L43Q 0.24 deleterious(0) probably_damaging(0.959) TCGA-DD-AAC9-01 11 57137445 57137445 C T P2RX3 Missense_Mutation p.S390L 0.23 deleterious(0) probably_damaging(0.998) TCGA-DD-AAC9-01 11 9225351 9225351 T C DENND5A Missense_Mutation p.I269V 0.22 tolerated(0.8) benign(0.035) TCGA-DD-AAC9-01 12 111051919 111051919 C T TCTN1 5'Flank 0.16 TCGA-DD-AAC9-01 12 112721009 112721009 A G HECTD4 Missense_Mutation p.L334P 0.25 probably_damaging(0.947) TCGA-DD-AAC9-01 12 130185090 130185090 C T TMEM132D Missense_Mutation p.R78Q 0.25 deleterious(0) probably_damaging(0.989) TCGA-DD-AAC9-01 12 32908303 32908303 G A YARS2 Missense_Mutation p.T169I 0.27 tolerated(0.31) benign(0.021) TCGA-DD-AAC9-01 12 50869876 50869876 C T LARP4 3'UTR 0.10 TCGA-DD-AAC9-01 12 53825147 53825147 G T AMHR2 Missense_Mutation p.A538S 0.25 tolerated_low_confidence(0.23) benign(0.364) TCGA-DD-AAC9-01 14 20296452 20296452 T C OR4N2 Missense_Mutation p.L282S 0.21 deleterious(0) benign(0.24) TCGA-DD-AAC9-01 14 93408041 93408041 C T ITPK1 Silent p.A370A 0.21 TCGA-DD-AAC9-01 15 101098919 101098919 T C RNU6-181P 3'Flank 0.13 TCGA-DD-AAC9-01 15 73552722 73552722 G A NEO1 Missense_Mutation p.A772T 0.07 tolerated(1) benign(0.078) TCGA-DD-AAC9-01 15 91493443 91493443 C T UNC45A Silent p.A711A 0.07 TCGA-DD-AAC9-01 16 16248587 16248587 T G ABCC6 Missense_Mutation p.E1369A 0.34 tolerated(0.21) benign(0.034) TCGA-DD-AAC9-01 16 23480238 23480238 G T GGA2 Missense_Mutation p.S567Y 0.06 deleterious(0) probably_damaging(1) TCGA-DD-AAC9-01 16 30041827 30041827 C A FAM57B Missense_Mutation p.G8W 0.27 deleterious(0) probably_damaging(1) TCGA-DD-AAC9-01 16 68160388 68160388 G T NFATC3 Missense_Mutation p.A426S 0.27 tolerated(1) benign(0.001) TCGA-DD-AAC9-01 17 33806550 33806550 A C SLFN12L Missense_Mutation p.F227V 0.16 deleterious(0.01) probably_damaging(0.991) TCGA-DD-AAC9-01 17 37111151 37111151 A G FBXO47 Silent p.P155P 0.06 TCGA-DD-AAC9-01 17 4580066 4580066 C A PELP1 Missense_Mutation p.L228F 0.15 probably_damaging(0.949) TCGA-DD-AAC9-01 17 46655393 46655393 G A HOXB4 Missense_Mutation p.P97S 0.22 tolerated(0.28) benign(0.006) TCGA-DD-AAC9-01 17 48456464 48456464 C A EME1 Missense_Mutation p.T383N 0.31 tolerated(0.34) benign(0.001) TCGA-DD-AAC9-01 17 60742068 60742068 G A MRC2 Missense_Mutation p.C93Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-DD-AAC9-01 17 79995521 79995521 G A DCXR Missense_Mutation p.T13I 0.20 deleterious(0) probably_damaging(0.996) TCGA-DD-AAC9-01 17 80051184 80051184 T G FASN Missense_Mutation p.N189T 0.34 tolerated(0.09) benign(0.353) TCGA-DD-AAC9-01 18 63477123 63477123 C A CDH7 Missense_Mutation p.P132T 0.16 deleterious(0.01) probably_damaging(0.955) TCGA-DD-AAC9-01 18 63481780 63481780 G A CDH7 Missense_Mutation p.A189T 0.29 deleterious(0.02) probably_damaging(0.995) TCGA-DD-AAC9-01 19 22941303 22941303 T C ZNF99 Missense_Mutation p.K470E 0.26 tolerated(0.73) benign(0.09) TCGA-DD-AAC9-01 19 3452573 3452573 C T NFIC Missense_Mutation p.A393V 0.11 deleterious(0.04) probably_damaging(0.999) TCGA-DD-AAC9-01 19 40434029 40434029 G T FCGBP Silent p.V80V 0.23 TCGA-DD-AAC9-01 19 50978748 50978748 T C FAM71E1 Intron 0.26 TCGA-DD-AAC9-01 19 52115409 52115409 A G SIGLEC5 3'UTR 0.10 TCGA-DD-AAC9-01 19 52220241 52220241 G A HAS1 Missense_Mutation p.S303F 0.23 deleterious(0) probably_damaging(0.992) TCGA-DD-AAC9-01 19 54757883 54757883 C A LILRB5 Missense_Mutation p.S452I 0.04 tolerated(0.05) benign(0.005) TCGA-DD-AAC9-01 19 56600216 56600216 G C ZNF787 Missense_Mutation p.L109V 0.23 deleterious(0) probably_damaging(0.99) TCGA-DD-AAC9-01 19 758004 758004 G A MISP Missense_Mutation p.R353Q 0.20 deleterious(0.01) possibly_damaging(0.631) TCGA-DD-AAC9-01 1 115229449 115229449 C G AMPD1 Missense_Mutation p.D133H 0.04 deleterious(0.04) benign(0.003) TCGA-DD-AAC9-01 1 115280135 115280135 G C CSDE1 Missense_Mutation p.P166R 0.26 tolerated(0.11) probably_damaging(0.99) TCGA-DD-AAC9-01 1 152084323 152084323 C A TCHH Missense_Mutation p.W457L 0.18 unknown(0) TCGA-DD-AAC9-01 1 155011941 155011941 C T DCST1 Missense_Mutation p.P109S 0.06 deleterious(0) probably_damaging(0.996) TCGA-DD-AAC9-01 1 161018501 161018501 C T ARHGAP30 Silent p.E770E 0.70 TCGA-DD-AAC9-01 1 202725610 202725610 C T KDM5B Nonsense_Mutation p.W411* 0.04 TCGA-DD-AAC9-01 1 21050633 21050633 C G SH2D5 Missense_Mutation p.G248R 0.23 deleterious(0) probably_damaging(1) TCGA-DD-AAC9-01 1 211751728 211751728 C A SLC30A1 Missense_Mutation p.R76L 0.69 deleterious(0) probably_damaging(0.99) TCGA-DD-AAC9-01 1 216595468 216595469 - AGA USH2A In_Frame_Ins p.S70dup 0.46 TCGA-DD-AAC9-01 1 220340743 220340743 T C RAB3GAP2 Splice_Site p.X994_splice 0.68 TCGA-DD-AAC9-01 1 228645397 228645397 G A HIST3H2A Missense_Mutation p.S41L 0.05 deleterious_low_confidence(0) benign(0.352) TCGA-DD-AAC9-01 1 243354614 243354614 T A CEP170 Missense_Mutation p.I272L 0.63 tolerated(0.32) benign(0.004) TCGA-DD-AAC9-01 20 21687002 21687002 C A PAX1 Intron 0.19 TCGA-DD-AAC9-01 20 56090848 56090848 G T CTCFL Missense_Mutation p.R368S 0.22 deleterious(0) probably_damaging(0.998) TCGA-DD-AAC9-01 2 103236548 103236548 C A SLC9A2 Missense_Mutation p.P81T 0.32 deleterious(0) possibly_damaging(0.551) TCGA-DD-AAC9-01 2 113940649 113940649 C T PSD4 Missense_Mutation p.P206S 0.07 deleterious_low_confidence(0.01) benign(0.164) TCGA-DD-AAC9-01 2 227919329 227919329 C A COL4A4 Silent p.R947R 0.06 TCGA-DD-AAC9-01 2 233897434 233897434 A T NEU2 Missense_Mutation p.H18L 0.24 tolerated(0.65) benign(0.002) TCGA-DD-AAC9-01 2 47083082 47083082 A C LINC01119 Missense_Mutation p.M37L 0.07 deleterious_low_confidence(0) unknown(0) TCGA-DD-AAC9-01 2 55460543 55460543 G A RPS27A Silent p.Q31Q 0.05 TCGA-DD-AAC9-01 3 108179187 108179187 T A MYH15 Missense_Mutation p.K651M 0.07 deleterious(0) probably_damaging(0.982) TCGA-DD-AAC9-01 3 16358270 16358270 C T RFTN1 3'UTR 0.21 TCGA-DD-AAC9-01 3 183959046 183959046 G A VWA5B2 Missense_Mutation p.D1012N 0.10 tolerated(0.53) benign(0.001) TCGA-DD-AAC9-01 3 3888771 3888771 C A LRRN1 3'UTR 0.20 TCGA-DD-AAC9-01 3 49934971 49934971 C A MST1R Silent p.L676L 0.29 TCGA-DD-AAC9-01 3 58303188 58303189 TT - RPP14 Frame_Shift_Del p.L114Ifs*3 0.20 TCGA-DD-AAC9-01 4 123260512 123260512 A G KIAA1109 Missense_Mutation p.N4101D 0.28 benign(0.002) TCGA-DD-AAC9-01 4 148743969 148743969 C G ARHGAP10 Missense_Mutation p.C82W 0.19 deleterious(0.02) probably_damaging(0.945) TCGA-DD-AAC9-01 4 39409060 39409060 T C KLB Missense_Mutation p.V164A 0.03 tolerated(1) benign(0.006) TCGA-DD-AAC9-01 4 5721031 5721031 G A EVC Silent p.S77S 0.18 TCGA-DD-AAC9-01 4 8418225 8418225 G A ACOX3 Silent p.G8G 0.29 TCGA-DD-AAC9-01 4 90856570 90856570 C A MMRN1 Missense_Mutation p.S580Y 0.23 deleterious(0.03) benign(0.352) TCGA-DD-AAC9-01 5 115327845 115327845 C A AQPEP Missense_Mutation p.D377E 0.20 tolerated(0.24) benign(0.159) TCGA-DD-AAC9-01 5 130797637 130797637 C T RAPGEF6 Silent p.L875L 0.32 TCGA-DD-AAC9-01 5 132216770 132216771 - C AFF4 Frame_Shift_Ins p.D1158Gfs*9 0.18 TCGA-DD-AAC9-01 5 136974747 136974747 C G KLHL3 Missense_Mutation p.D372H 0.07 deleterious(0) possibly_damaging(0.906) TCGA-DD-AAC9-01 5 139714267 139714267 G A HBEGF Silent p.S207S 0.05 TCGA-DD-AAC9-01 5 140603901 140603910 GAAAAATATC - PCDHB14 Frame_Shift_Del p.G275Vfs*26 0.19 TCGA-DD-AAC9-01 5 140650 140650 T A PLEKHG4B Silent p.T76T 0.03 TCGA-DD-AAC9-01 5 141034964 141034964 G A ARAP3 Nonsense_Mutation p.R1372* 0.27 TCGA-DD-AAC9-01 5 159855662 159855662 C A PTTG1 Missense_Mutation p.P195T 0.12 deleterious(0) possibly_damaging(0.807) TCGA-DD-AAC9-01 5 35904531 35904531 C A CAPSL 3'UTR 0.23 TCGA-DD-AAC9-01 5 66460639 66460639 C T MAST4 Missense_Mutation p.P1878S 0.18 benign(0.233) TCGA-DD-AAC9-01 6 10671652 10671652 T G C6orf52 3'Flank 0.24 TCGA-DD-AAC9-01 6 112574988 112574988 A G LAMA4 Intron 0.09 TCGA-DD-AAC9-01 6 123385012 123385012 G T CLVS2 3'UTR 0.22 TCGA-DD-AAC9-01 6 25769269 25769269 A G SLC17A4 Missense_Mutation p.I50V 0.23 tolerated(0.13) benign(0.032) TCGA-DD-AAC9-01 6 33172866 33172866 G T HSD17B8 Missense_Mutation p.R80S 0.28 tolerated(0.58) benign(0.009) TCGA-DD-AAC9-01 6 34857219 34857219 G T ANKS1A Missense_Mutation p.G14W 0.28 deleterious(0) probably_damaging(1) TCGA-DD-AAC9-01 6 35715163 35715163 G T ARMC12 Silent p.V217V 0.28 TCGA-DD-AAC9-01 6 5369227 5369227 G A FARS2 Missense_Mutation p.D142N 0.24 deleterious(0.01) probably_damaging(0.965) TCGA-DD-AAC9-01 6 76344460 76344460 G T SENP6 Missense_Mutation p.V131L 0.24 deleterious(0.01) benign(0.111) TCGA-DD-AAC9-01 6 90460121 90460121 T C MDN1 Missense_Mutation p.I1120V 0.32 benign(0.303) TCGA-DD-AAC9-01 7 5633032 5633032 G A FSCN1 Silent p.L155L 0.30 TCGA-DD-AAC9-01 7 75024513 75024513 C T TRIM73 5'Flank 0.31 TCGA-DD-AAC9-01 7 80374511 80374511 T C SEMA3C Missense_Mutation p.Q652R 0.21 tolerated(0.29) benign(0.007) TCGA-DD-AAC9-01 7 83610774 83610774 T A SEMA3A Silent p.S505S 0.21 TCGA-DD-AAC9-01 8 104778484 104778484 A G RIMS2 Silent p.K139K 0.15 TCGA-DD-AAC9-01 8 26265768 26265768 C T BNIP3L Missense_Mutation p.R163C 0.30 deleterious(0.05) probably_damaging(0.956) TCGA-DD-AAC9-01 8 41348232 41348232 C A GOLGA7 5'UTR 0.27 TCGA-DD-AAC9-01 9 115959216 115959216 C A FKBP15 Missense_Mutation p.R287M 0.17 deleterious(0.01) possibly_damaging(0.89) TCGA-DD-AAC9-01 9 15422852 15422852 T G SNAPC3 5'UTR 0.23 TCGA-DD-AAC9-01 9 19102558 19102558 G A HAUS6 Missense_Mutation p.A31V 0.26 tolerated(0.3) possibly_damaging(0.796) TCGA-DD-AAC9-01 9 21971101 21971101 G T CDKN2A Missense_Mutation p.A86D 0.32 deleterious(0) probably_damaging(0.997) TCGA-DD-AAC9-01 9 35835214 35835214 A G TMEM8B Intron 0.29 TCGA-DD-AAC9-01 9 79120117 79120117 G T GCNT1 3'UTR 0.27 TCGA-DD-AAC9-01 9 95780428 95780428 T A FGD3 Missense_Mutation p.I429N 0.28 tolerated(0.19) benign(0.424) TCGA-DD-AAC9-01 X 105879772 105879772 G T CXorf57 Splice_Site p.X435_splice 0.52 TCGA-DD-AAC9-01 X 22263484 22263484 G A PHEX Missense_Mutation p.R702Q 0.09 deleterious(0.02) probably_damaging(0.998) TCGA-DD-AAC9-01 X 48823176 48823176 C T KCND1 Missense_Mutation p.G454S 0.36 tolerated_low_confidence(0.72) benign(0.021) TCGA-DD-AAC9-01 X 55247029 55247029 C A PAGE5 5'UTR 0.57 TCGA-DD-AAC9-01 X 77245380 77245380 A G ATP7A Missense_Mutation p.Y421C 0.53 deleterious(0) probably_damaging(0.98) TCGA-DD-AAC9-01 X 8503661 8503661 T A KAL1 Missense_Mutation p.I605F 0.53 deleterious(0.01) possibly_damaging(0.541) TCGA-DD-AACA-01 10 17113430 17113430 C T CUBN Missense_Mutation p.V874I 0.09 tolerated(0.84) benign(0.012) TCGA-DD-AACA-01 10 24727389 24727389 C T KIAA1217 Missense_Mutation p.T276I 0.40 tolerated(0.53) possibly_damaging(0.804) TCGA-DD-AACA-01 10 43292360 43292360 C T BMS1 Silent p.C556C 0.32 TCGA-DD-AACA-01 10 70863975 70863975 T C SRGN 3'UTR 0.61 TCGA-DD-AACA-01 10 87966273 87966273 G A GRID1 Missense_Mutation p.S123L 0.37 deleterious_low_confidence(0.01) benign(0.143) TCGA-DD-AACA-01 11 116706843 116706843 T G APOA1 Missense_Mutation p.Q162P 0.43 deleterious(0) probably_damaging(0.971) TCGA-DD-AACA-01 11 122742169 122742169 C T CRTAM 3'UTR 0.41 TCGA-DD-AACA-01 11 62159876 62159876 G A ASRGL1 3'UTR 0.37 TCGA-DD-AACA-01 11 63078752 63078752 T C SLC22A10 3'UTR 0.50 TCGA-DD-AACA-01 11 69063143 69063143 T C MYEOV Missense_Mutation p.S76P 0.51 tolerated_low_confidence(0.27) benign(0.003) TCGA-DD-AACA-01 11 71949399 71949399 A G INPPL1 3'UTR 0.42 TCGA-DD-AACA-01 11 94281982 94281982 A T FUT4 3'UTR 0.50 TCGA-DD-AACA-01 12 12871044 12871044 C - CDKN1B Frame_Shift_Del p.P92Rfs*27 0.33 TCGA-DD-AACA-01 12 50153095 50153095 A G TMBIM6 Missense_Mutation p.D260G 0.42 deleterious(0) probably_damaging(1) TCGA-DD-AACA-01 12 57850023 57850023 A G INHBE Missense_Mutation p.R149G 0.44 tolerated(0.77) benign(0.011) TCGA-DD-AACA-01 12 6424240 6424240 C T PLEKHG6 Missense_Mutation p.P122S 0.35 deleterious(0.01) probably_damaging(0.985) TCGA-DD-AACA-01 12 9833543 9833543 C G CLEC2D Missense_Mutation p.S29C 0.30 tolerated(0.06) benign(0.035) TCGA-DD-AACA-01 13 79191344 79191344 T C RNF219 Intron 0.64 TCGA-DD-AACA-01 14 57686092 57686092 T C EXOC5 Missense_Mutation p.I492V 0.34 tolerated(0.17) benign(0.26) TCGA-DD-AACA-01 14 58955498 58955498 A G KIAA0586 Silent p.T1282T 0.08 TCGA-DD-AACA-01 14 76488730 76488730 G T IFT43 Missense_Mutation p.A70S 0.74 tolerated(1) benign(0.004) TCGA-DD-AACA-01 15 20657656 20657656 G A HERC2P3 RNA 0.42 TCGA-DD-AACA-01 15 33024862 33024862 A G GREM1 3'UTR 0.40 TCGA-DD-AACA-01 15 41771302 41771302 C T RTF1 Missense_Mutation p.S607F 0.30 deleterious(0) benign(0.275) TCGA-DD-AACA-01 15 41854916 41854916 G A TYRO3 Missense_Mutation p.G194R 0.41 deleterious(0) probably_damaging(0.997) TCGA-DD-AACA-01 15 62999360 62999360 C T TLN2 Nonsense_Mutation p.Q694* 0.33 TCGA-DD-AACA-01 15 69329420 69329432 TTCATGGGCCCAA - NOX5 Frame_Shift_Del p.F414Sfs*62 0.29 TCGA-DD-AACA-01 15 72767235 72767235 C T ARIH1 Silent p.G85G 0.08 TCGA-DD-AACA-01 16 15069069 15069069 C T PDXDC1 Silent p.L5L 0.50 TCGA-DD-AACA-01 16 336642 336642 T C PDIA2 Silent p.I443I 0.35 TCGA-DD-AACA-01 16 4242284 4242284 A G SRL Missense_Mutation p.I431T 0.50 deleterious(0) possibly_damaging(0.72) TCGA-DD-AACA-01 16 89260253 89260253 C T CDH15 Missense_Mutation p.R695C 0.49 tolerated(0.17) possibly_damaging(0.849) TCGA-DD-AACA-01 16 8992449 8992449 G A USP7 Missense_Mutation p.T860I 0.41 tolerated(0.08) benign(0.207) TCGA-DD-AACA-01 17 11797765 11797765 C A DNAH9 Silent p.T3786T 0.69 TCGA-DD-AACA-01 17 26723213 26723213 A G SARM1 Missense_Mutation p.I661V 0.49 tolerated(0.28) possibly_damaging(0.471) TCGA-DD-AACA-01 17 26723216 26723216 A G SARM1 Missense_Mutation p.I662V 0.49 tolerated(0.42) benign(0.033) TCGA-DD-AACA-01 17 27420010 27420010 G A MYO18A Missense_Mutation p.R1646W 0.61 deleterious(0) probably_damaging(0.978) TCGA-DD-AACA-01 17 32907872 32907872 C T TMEM132E 5'UTR 0.26 TCGA-DD-AACA-01 17 39036387 39036387 T A KRT20 Missense_Mutation p.N253Y 0.62 tolerated(0.05) benign(0.134) TCGA-DD-AACA-01 17 62463723 62463723 C A MILR1 Missense_Mutation p.L87I 0.07 deleterious(0.05) possibly_damaging(0.807) TCGA-DD-AACA-01 17 72767893 72767893 A C NAT9 Silent p.P198P 0.30 TCGA-DD-AACA-01 17 7490856 7490856 A C MPDU1 Missense_Mutation p.K244T 0.80 deleterious(0.03) benign(0.126) TCGA-DD-AACA-01 17 79536080 79536080 A C NPLOC4 Missense_Mutation p.F471V 0.50 deleterious(0) benign(0.212) TCGA-DD-AACA-01 17 8049752 8049752 G A PER1 Missense_Mutation p.T659I 0.52 deleterious(0.02) benign(0.128) TCGA-DD-AACA-01 18 25593865 25593865 T A CDH2 Missense_Mutation p.S61C 0.45 deleterious(0.03) possibly_damaging(0.643) TCGA-DD-AACA-01 18 46448265 46448265 A G SMAD7 Missense_Mutation p.L253P 0.57 tolerated(0.72) benign(0.177) TCGA-DD-AACA-01 18 5396258 5396258 G C EPB41L3 Missense_Mutation p.T972R 0.35 deleterious(0.04) possibly_damaging(0.797) TCGA-DD-AACA-01 18 63477233 63477233 G A CDH7 Silent p.V168V 0.47 TCGA-DD-AACA-01 18 70205486 70205486 G C CBLN2 Silent p.L200L 0.41 TCGA-DD-AACA-01 19 10945612 10945612 T G TMED1 Missense_Mutation p.K155Q 0.34 tolerated(0.29) benign(0.012) TCGA-DD-AACA-01 19 10945625 10945625 T G TMED1 Missense_Mutation p.K150N 0.35 deleterious(0) benign(0.411) TCGA-DD-AACA-01 19 1271585 1271585 G A CIRBP Missense_Mutation p.E129K 0.38 tolerated(0.11) unknown(0) TCGA-DD-AACA-01 19 1495318 1495341 TCTGCTGTTCGGCTACGGAGCGTC - REEP6 In_Frame_Del p.F50_L57del 0.44 TCGA-DD-AACA-01 19 18001706 18001706 C T SLC5A5 Missense_Mutation p.R555C 0.39 deleterious(0.01) probably_damaging(0.983) TCGA-DD-AACA-01 19 19626671 19626671 T C NDUFA13 5'UTR 0.41 TCGA-DD-AACA-01 19 35940857 35940857 G T FFAR2 Missense_Mutation p.V81F 0.47 deleterious(0.04) possibly_damaging(0.578) TCGA-DD-AACA-01 19 40368825 40368825 A T FCGBP Missense_Mutation p.S4175T 0.12 benign(0.418) TCGA-DD-AACA-01 19 47995285 47995285 A C NAPA Missense_Mutation p.M218R 0.35 tolerated(0.36) benign(0.001) TCGA-DD-AACA-01 19 48305638 48305638 T C TPRX1 Silent p.P210P 0.30 TCGA-DD-AACA-01 19 49244664 49244664 A G IZUMO1 Missense_Mutation p.S276P 0.55 tolerated(0.31) benign(0.003) TCGA-DD-AACA-01 19 49484845 49484845 G A GYS1 Missense_Mutation p.R371W 0.47 deleterious(0) probably_damaging(0.998) TCGA-DD-AACA-01 19 51844521 51844521 G T VSIG10L Silent p.R261R 0.41 TCGA-DD-AACA-01 19 52034164 52034164 G A SIGLEC6 Silent p.G159G 0.30 TCGA-DD-AACA-01 19 55452329 55452329 C T NLRP7 Missense_Mutation p.A108T 0.25 tolerated(0.67) benign(0.035) TCGA-DD-AACA-01 1 103405915 103405915 G T COL11A1 Missense_Mutation p.P1118T 0.30 unknown(0) TCGA-DD-AACA-01 1 111216298 111216298 C T KCNA3 Silent p.S378S 0.49 TCGA-DD-AACA-01 1 112525100 112525100 G T KCND3 Missense_Mutation p.F83L 0.39 deleterious(0) benign(0.026) TCGA-DD-AACA-01 1 114249252 114249253 - A PHTF1 Frame_Shift_Ins p.M454Ifs*46 0.31 TCGA-DD-AACA-01 1 120438632 120438632 A C ADAM30 Missense_Mutation p.C110G 0.57 deleterious(0) probably_damaging(1) TCGA-DD-AACA-01 1 120439002 120439002 C T ADAM30 5'UTR 0.43 TCGA-DD-AACA-01 1 152282404 152282404 G A FLG Missense_Mutation p.S1653L 0.35 benign(0.307) TCGA-DD-AACA-01 1 153004880 153004880 A C SPRR1B Missense_Mutation p.Q20P 0.40 deleterious(0) unknown(0) TCGA-DD-AACA-01 1 153616037 153616037 A T CHTOP Intron 0.46 TCGA-DD-AACA-01 1 154144902 154144902 A T TPM3 Intron 0.47 TCGA-DD-AACA-01 1 160604639 160604639 T G SLAMF1 Missense_Mutation p.N155T 0.40 deleterious(0.03) benign(0.008) TCGA-DD-AACA-01 1 197157558 197157558 T C ZBTB41 Silent p.K470K 0.32 TCGA-DD-AACA-01 1 228462303 228462303 T A OBSCN Missense_Mutation p.L2280Q 0.38 probably_damaging(1) TCGA-DD-AACA-01 1 22922617 22922617 G A EPHA8 Silent p.K572K 0.06 TCGA-DD-AACA-01 1 229625781 229625781 A T NUP133 Missense_Mutation p.L372Q 0.46 deleterious(0) probably_damaging(0.995) TCGA-DD-AACA-01 1 245851704 245851704 C T KIF26B Missense_Mutation p.R1807C 0.41 deleterious(0) unknown(0) TCGA-DD-AACA-01 1 57206372 57206372 T C C1orf168 Silent p.L567L 0.38 TCGA-DD-AACA-01 20 210326 210326 G A DEFB129 Missense_Mutation p.A156T 0.40 deleterious(0.02) possibly_damaging(0.483) TCGA-DD-AACA-01 20 36031218 36031218 C A SRC Nonsense_Mutation p.S446* 0.52 TCGA-DD-AACA-01 20 37357190 37357190 A G SLC32A1 Missense_Mutation p.I496V 0.40 tolerated(0.53) possibly_damaging(0.669) TCGA-DD-AACA-01 20 52561295 52561295 T C BCAS1 3'UTR 0.40 TCGA-DD-AACA-01 20 55066629 55066629 A T GCNT7 Missense_Mutation p.M304K 0.39 tolerated_low_confidence(0.7) benign(0.001) TCGA-DD-AACA-01 20 585096 585096 G T TCF15 3'UTR 0.44 TCGA-DD-AACA-01 22 24455754 24455754 G T CABIN1 Missense_Mutation p.A443S 0.06 tolerated(0.37) possibly_damaging(0.582) TCGA-DD-AACA-01 22 25024660 25024660 G A GGT1 Missense_Mutation p.A522T 0.32 tolerated(0.53) benign(0.043) TCGA-DD-AACA-01 22 32109471 32109471 G T PRR14L Missense_Mutation p.L1452M 0.06 tolerated(0.22) benign(0.082) TCGA-DD-AACA-01 22 37407302 37407302 A G TST Silent p.D220D 0.49 TCGA-DD-AACA-01 22 38120691 38120691 T G TRIOBP Missense_Mutation p.S710A 0.40 deleterious_low_confidence(0) benign(0.097) TCGA-DD-AACA-01 22 38302534 38302534 G T MICALL1 Silent p.L35L 0.38 TCGA-DD-AACA-01 22 41654107 41654107 T C RANGAP1 Missense_Mutation p.I207V 0.08 tolerated(0.09) benign(0.011) TCGA-DD-AACA-01 2 131522066 131522066 C A AMER3 Silent p.G807G 0.33 TCGA-DD-AACA-01 2 216270958 216270958 T C FN1 Intron 0.35 TCGA-DD-AACA-01 2 228197291 228197291 C T MFF Missense_Mutation p.P139L 0.40 tolerated(0.2) possibly_damaging(0.768) TCGA-DD-AACA-01 2 238280319 238280319 T A COL6A3 Intron 0.39 TCGA-DD-AACA-01 2 27822456 27822456 G T ZNF512 Missense_Mutation p.G95V 0.39 tolerated_low_confidence(0.09) benign(0.404) TCGA-DD-AACA-01 2 43015676 43015676 C T HAAO Missense_Mutation p.G51D 0.46 deleterious(0) probably_damaging(1) TCGA-DD-AACA-01 2 44102319 44102319 T G ABCG8 Missense_Mutation p.I508S 0.34 tolerated(0.23) benign(0.219) TCGA-DD-AACA-01 2 89416930 89416930 C A IGKV1-17 Missense_Mutation p.S85I 0.36 deleterious(0.02) possibly_damaging(0.834) TCGA-DD-AACA-01 2 90122036 90122036 G T IGKV1D-17 Missense_Mutation p.S85I 0.14 deleterious(0.02) possibly_damaging(0.635) TCGA-DD-AACA-01 3 132047193 132047193 G C ACPP Missense_Mutation p.G68A 0.36 deleterious(0) probably_damaging(0.998) TCGA-DD-AACA-01 3 17053189 17053189 A G PLCL2 Missense_Mutation p.Y658C 0.45 tolerated(0.28) benign(0.02) TCGA-DD-AACA-01 3 196018138 196018138 A G TCTEX1D2 3'UTR 0.49 TCGA-DD-AACA-01 3 25777623 25777623 C G NGLY1 Missense_Mutation p.V341L 0.33 deleterious(0) benign(0.273) TCGA-DD-AACA-01 3 41266101 41266101 C T CTNNB1 Missense_Mutation p.S33F 0.32 deleterious(0) probably_damaging(0.949) TCGA-DD-AACA-01 3 45152154 45152154 C A CDCP1 Nonsense_Mutation p.E279* 0.49 TCGA-DD-AACA-01 3 62356922 62356922 C A FEZF2 Nonsense_Mutation p.E364* 0.38 TCGA-DD-AACA-01 3 64582563 64582563 C T ADAMTS9 Silent p.E1374E 0.35 TCGA-DD-AACA-01 3 69362608 69362608 C A FRMD4B Missense_Mutation p.V75F 0.44 deleterious(0) probably_damaging(0.999) TCGA-DD-AACA-01 3 9867563 9867563 C T TTLL3 Missense_Mutation p.P412S 0.50 deleterious(0.02) probably_damaging(0.99) TCGA-DD-AACA-01 4 121966814 121966814 G C NDNF Missense_Mutation p.T60R 0.46 deleterious(0.04) benign(0.209) TCGA-DD-AACA-01 4 142155146 142155146 G C ZNF330 3'UTR 0.54 TCGA-DD-AACA-01 4 619713 619713 C A PDE6B Missense_Mutation p.R100S 0.52 tolerated(0.16) probably_damaging(1) TCGA-DD-AACA-01 5 131915643 131915643 A C RAD50 Missense_Mutation p.K214T 0.03 deleterious(0) possibly_damaging(0.765) TCGA-DD-AACA-01 5 135388596 135388596 A G TGFBI Missense_Mutation p.D305G 0.45 tolerated(0.44) probably_damaging(0.998) TCGA-DD-AACA-01 5 140168107 140168107 G C PCDHA1 Silent p.A744A 0.43 TCGA-DD-AACA-01 5 149602646 149602646 C T CAMK2A Missense_Mutation p.A458T 0.40 tolerated_low_confidence(0.59) benign(0.009) TCGA-DD-AACA-01 5 158586026 158586026 C A RNF145 Silent p.V578V 0.38 TCGA-DD-AACA-01 5 161115970 161115970 G T GABRA6 Missense_Mutation p.V81F 0.50 deleterious(0.05) probably_damaging(0.999) TCGA-DD-AACA-01 5 31541416 31541416 G A C5orf22 Missense_Mutation p.R300Q 0.47 deleterious(0.01) possibly_damaging(0.889) TCGA-DD-AACA-01 5 33630934 33630934 C A ADAMTS12 Missense_Mutation p.C658F 0.38 deleterious(0) probably_damaging(0.977) TCGA-DD-AACA-01 5 7698485 7698485 A G ADCY2 Missense_Mutation p.I369M 0.54 deleterious(0) probably_damaging(0.999) TCGA-DD-AACA-01 6 108194082 108194082 C T SEC63 Missense_Mutation p.G690E 0.45 deleterious(0) probably_damaging(0.997) TCGA-DD-AACA-01 6 111652972 111652972 T C REV3L Silent p.K2647K 0.38 TCGA-DD-AACA-01 6 129723605 129723605 T C LAMA2 Missense_Mutation p.L1900S 0.60 deleterious(0) probably_damaging(0.999) TCGA-DD-AACA-01 6 138483281 138483281 A G KIAA1244 Missense_Mutation p.I20V 0.39 tolerated(0.15) benign(0.021) TCGA-DD-AACA-01 6 139234056 139234056 T C REPS1 Missense_Mutation p.D605G 0.41 tolerated(0.42) possibly_damaging(0.535) TCGA-DD-AACA-01 6 147684673 147684673 G A STXBP5 Silent p.V916V 0.36 TCGA-DD-AACA-01 6 153316417 153316417 T C MTRF1L Missense_Mutation p.E126G 0.45 tolerated(0.16) benign(0.016) TCGA-DD-AACA-01 6 159653660 159653660 G A FNDC1 Missense_Mutation p.A706T 0.49 tolerated_low_confidence(0.58) unknown(0) TCGA-DD-AACA-01 6 161134133 161134133 T A PLG Missense_Mutation p.Y175N 0.26 deleterious(0.02) possibly_damaging(0.682) TCGA-DD-AACA-01 6 31795915 31795915 C G HSPA1B Missense_Mutation p.P63R 0.55 deleterious_low_confidence(0) probably_damaging(1) TCGA-DD-AACA-01 6 33231576 33231576 G C VPS52 Missense_Mutation p.N567K 0.04 deleterious(0) probably_damaging(1) TCGA-DD-AACA-01 6 71298522 71298522 G A C6orf57 3'UTR 0.37 TCGA-DD-AACA-01 6 97001478 97001478 G T UFL1 3'UTR 0.44 TCGA-DD-AACA-01 6 99883624 99883624 C T USP45 Missense_Mutation p.A805T 0.37 deleterious(0) probably_damaging(1) TCGA-DD-AACA-01 7 150935715 150935715 G C CHPF2 Missense_Mutation p.R756P 0.23 deleterious(0) probably_damaging(0.999) TCGA-DD-AACA-01 7 92861779 92861779 A T CCDC132 5'UTR 0.15 TCGA-DD-AACA-01 8 10782179 10782179 A G XKR6 Missense_Mutation p.I309T 0.45 deleterious(0.01) probably_damaging(0.976) TCGA-DD-AACA-01 8 125580812 125580812 A G MTSS1 Intron 0.47 TCGA-DD-AACA-01 8 132966069 132966069 C T EFR3A Nonsense_Mutation p.R165* 0.21 TCGA-DD-AACA-01 8 139856352 139856352 G T COL22A1 Silent p.T236T 0.30 TCGA-DD-AACA-01 8 18662113 18662113 C A PSD3 Splice_Site p.X610_splice 0.46 TCGA-DD-AACA-01 8 24199212 24199212 A C ADAM28 Missense_Mutation p.E591A 0.49 tolerated(0.15) possibly_damaging(0.825) TCGA-DD-AACA-01 8 37996714 37996714 A G ASH2L 3'UTR 0.33 TCGA-DD-AACA-01 8 70744717 70744717 C A SLCO5A1 Silent p.V64V 0.63 TCGA-DD-AACA-01 8 75149131 75149131 T C JPH1 3'UTR 0.54 TCGA-DD-AACA-01 8 77767076 77767076 G T ZFHX4 Missense_Mutation p.R2640L 0.56 probably_damaging(0.986) TCGA-DD-AACA-01 9 124966945 124966945 G T LHX6 3'UTR 0.40 TCGA-DD-AACA-01 9 137703411 137703411 G A COL5A1 Missense_Mutation p.G1219D 0.38 unknown(0) TCGA-DD-AACA-01 9 140077646 140077646 G A ANAPC2 Missense_Mutation p.A406V 0.39 deleterious(0.02) probably_damaging(0.954) TCGA-DD-AACA-01 9 35068306 35068306 T G VCP Missense_Mutation p.N24T 0.46 deleterious(0.01) benign(0.187) TCGA-DD-AACA-01 9 85670496 85670496 C A RASEF Intron 0.39 TCGA-DD-AACA-01 X 107925029 107925029 T C COL4A5 Missense_Mutation p.I1376T 0.78 possibly_damaging(0.643) TCGA-DD-AACA-01 X 123514834 123514834 T A TENM1 Missense_Mutation p.K2584M 0.90 deleterious(0) probably_damaging(0.997) TCGA-DD-AACA-01 X 65408259 65408259 C T HEPH Silent p.L282L 0.92 TCGA-DD-AACA-01 X 70349274 70349274 T A MED12 Missense_Mutation p.V1229E 0.85 possibly_damaging(0.493) TCGA-DD-AACA-01 X 8553366 8553366 C T KAL1 Silent p.V266V 0.83 TCGA-DD-AACB-01 10 1405325 1405325 C A ADARB2 Missense_Mutation p.K325N 0.35 tolerated(0.05) probably_damaging(0.999) TCGA-DD-AACB-01 10 6262815 6262815 G A PFKFB3 Missense_Mutation p.S273N 0.14 benign(0) TCGA-DD-AACB-01 10 73594188 73594188 C T PSAP Missense_Mutation p.A39T 0.38 deleterious(0) probably_damaging(1) TCGA-DD-AACB-01 10 75296083 75296083 G - USP54 Frame_Shift_Del p.P363Lfs*79 0.17 TCGA-DD-AACB-01 11 100211261 100211261 T C CNTN5 Missense_Mutation p.S933P 0.29 deleterious(0) possibly_damaging(0.643) TCGA-DD-AACB-01 11 105923599 105923599 C A KBTBD3 Missense_Mutation p.W606L 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.494) TCGA-DD-AACB-01 11 105923600 105923600 A T KBTBD3 Missense_Mutation p.W606R 0.25 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-DD-AACB-01 11 132290055 132290055 C T OPCML 3'UTR 0.52 TCGA-DD-AACB-01 11 1856051 1856051 A C SYT8 Intron 0.67 TCGA-DD-AACB-01 11 49214430 49214430 A G FOLH1 Missense_Mutation p.L143S 0.17 tolerated(0.13) benign(0.039) TCGA-DD-AACB-01 11 56468502 56468502 C T OR9G1 Silent p.I213I 0.28 TCGA-DD-AACB-01 11 57080662 57080662 G A TNKS1BP1 Silent p.I500I 0.18 TCGA-DD-AACB-01 11 60107405 60107405 C T MS4A6E Silent p.L141L 0.48 TCGA-DD-AACB-01 11 64070996 64070996 T A TEX40 Missense_Mutation p.M132K 0.33 tolerated(0.07) benign(0.001) TCGA-DD-AACB-01 11 64855626 64855626 T G ZFPL1 3'UTR 0.48 TCGA-DD-AACB-01 11 812569 812569 G T RPLP2 Silent p.G69G 0.30 TCGA-DD-AACB-01 12 104327962 104327962 A G HSP90B1 Missense_Mutation p.K214E 0.10 deleterious(0) probably_damaging(0.995) TCGA-DD-AACB-01 12 11339508 11339508 C T TAS2R42 Silent p.L12L 0.25 TCGA-DD-AACB-01 12 31236792 31236792 G A DDX11 Missense_Mutation p.D64N 0.29 deleterious(0) probably_damaging(0.994) TCGA-DD-AACB-01 12 53775951 53775951 C T SP1 Missense_Mutation p.P74S 0.18 deleterious(0.01) possibly_damaging(0.857) TCGA-DD-AACB-01 12 70928402 70928402 G C PTPRB Missense_Mutation p.I2078M 0.23 deleterious(0.03) possibly_damaging(0.619) TCGA-DD-AACB-01 13 111371917 111371917 G A ING1 Missense_Mutation p.E303K 0.24 tolerated(0.11) probably_damaging(0.935) TCGA-DD-AACB-01 13 113882334 113882334 G T CUL4A Missense_Mutation p.C138F 0.37 tolerated(0.06) benign(0.018) TCGA-DD-AACB-01 13 25283923 25283923 A T ATP12A Missense_Mutation p.K913M 0.21 tolerated(0.06) benign(0.023) TCGA-DD-AACB-01 13 33704330 33704330 G T STARD13 Missense_Mutation p.L162M 0.07 deleterious(0.01) possibly_damaging(0.894) TCGA-DD-AACB-01 13 42385467 42385467 A G VWA8 Silent p.L653L 0.12 TCGA-DD-AACB-01 13 48612093 48612093 A G NUDT15 Intron 0.29 TCGA-DD-AACB-01 14 59953512 59953512 G A JKAMP Missense_Mutation p.G29E 0.18 tolerated(0.06) possibly_damaging(0.868) TCGA-DD-AACB-01 14 70177724 70177724 G T KIAA0247 3'UTR 0.67 TCGA-DD-AACB-01 14 86089391 86089391 G A FLRT2 Silent p.E511E 0.25 TCGA-DD-AACB-01 15 52015707 52015707 T C LYSMD2 3'UTR 0.07 TCGA-DD-AACB-01 15 79588959 79588959 C A ANKRD34C 3'UTR 0.14 TCGA-DD-AACB-01 15 81625501 81625501 A T TMC3 Silent p.P854P 0.12 TCGA-DD-AACB-01 15 85164886 85164886 C A ZSCAN2 Missense_Mutation p.S487Y 0.11 deleterious(0.01) probably_damaging(0.991) TCGA-DD-AACB-01 16 21270064 21270064 T G CRYM 3'UTR 0.44 TCGA-DD-AACB-01 16 67040705 67040705 A C CES4A Intron 0.65 TCGA-DD-AACB-01 16 67862725 67862725 C T CENPT Silent p.E434E 0.25 TCGA-DD-AACB-01 16 70432255 70432255 A - ST3GAL2 Frame_Shift_Del p.L60Pfs*54 0.17 TCGA-DD-AACB-01 17 35486338 35486338 T - ACACA Frame_Shift_Del p.K1966Rfs*10 0.24 TCGA-DD-AACB-01 17 37357506 37357506 C T RPL19 Missense_Mutation p.R16C 0.16 tolerated(0.13) benign(0.009) TCGA-DD-AACB-01 17 46687930 46687930 G A HOXB7 Silent p.D117D 0.22 TCGA-DD-AACB-01 17 48746279 48746279 A C ABCC3 Missense_Mutation p.S646R 0.41 tolerated(0.7) possibly_damaging(0.786) TCGA-DD-AACB-01 17 54991360 54991360 G A TRIM25 5'UTR 0.44 TCGA-DD-AACB-01 17 63537650 63537650 C T AXIN2 Missense_Mutation p.G328S 0.37 deleterious(0.01) possibly_damaging(0.506) TCGA-DD-AACB-01 17 68175757 68175757 C A KCNJ2 3'UTR 0.14 TCGA-DD-AACB-01 17 74093950 74093950 C A EXOC7 Missense_Mutation p.E189D 0.43 tolerated(0.09) benign(0.199) TCGA-DD-AACB-01 17 7577095 7577095 G C TP53 Missense_Mutation p.D281E 0.62 deleterious(0.01) probably_damaging(0.971) TCGA-DD-AACB-01 17 80050789 80050793 ATCTG - FASN Frame_Shift_Del p.T253Rfs*31 0.40 TCGA-DD-AACB-01 17 80615234 80615234 A T RAB40B 3'UTR 0.20 TCGA-DD-AACB-01 18 12464951 12464951 T C SPIRE1 Missense_Mutation p.T471A 0.46 tolerated(0.87) benign(0.008) TCGA-DD-AACB-01 18 13681644 13681644 A T FAM210A Missense_Mutation p.S145T 0.29 deleterious(0) probably_damaging(1) TCGA-DD-AACB-01 18 581037 581037 G C CETN1 3'UTR 0.11 TCGA-DD-AACB-01 18 9535711 9535711 G A RALBP1 Missense_Mutation p.E582K 0.24 tolerated(0.05) benign(0.137) TCGA-DD-AACB-01 19 10610330 10610330 C - KEAP1 Frame_Shift_Del p.G127Vfs*30 0.38 TCGA-DD-AACB-01 19 11945091 11945091 G A ZNF440 3'UTR 0.58 TCGA-DD-AACB-01 19 15586526 15586526 G - PGLYRP2 Frame_Shift_Del p.R319Dfs*8 0.19 TCGA-DD-AACB-01 19 519039 519039 G A TPGS1 Silent p.P163P 0.44 TCGA-DD-AACB-01 19 55086934 55086934 C T LILRA2 Silent p.H289H 0.30 TCGA-DD-AACB-01 19 6387475 6387475 T C GTF2F1 Missense_Mutation p.H141R 0.69 tolerated(0.22) benign(0.042) TCGA-DD-AACB-01 19 815228 815228 A G LPPR3 Missense_Mutation p.C121R 0.67 deleterious(0) probably_damaging(0.983) TCGA-DD-AACB-01 19 9089258 9089258 A T MUC16 Missense_Mutation p.S853T 0.70 unknown(0) TCGA-DD-AACB-01 1 114443767 114443767 C - AP4B1 Intron 0.32 TCGA-DD-AACB-01 1 1500211 1500211 C - SSU72 Frame_Shift_Del p.D56Ifs*52 0.26 TCGA-DD-AACB-01 1 160493038 160493038 C T SLAMF6 5'UTR 0.20 TCGA-DD-AACB-01 1 160849202 160849202 C T ITLN1 Missense_Mutation p.E230K 0.32 deleterious(0.04) benign(0.398) TCGA-DD-AACB-01 1 163117258 163117258 C A RGS5 Missense_Mutation p.M144I 0.34 deleterious(0.03) benign(0.002) TCGA-DD-AACB-01 1 164769105 164769105 G A PBX1 Missense_Mutation p.R227H 0.30 deleterious(0.01) benign(0.344) TCGA-DD-AACB-01 1 176837963 176837963 C A ASTN1 Intron 0.37 TCGA-DD-AACB-01 1 186304629 186304629 C T TPR Silent p.R1584R 0.12 TCGA-DD-AACB-01 1 197065148 197065148 A G ASPM Silent p.Y2989Y 0.40 TCGA-DD-AACB-01 1 205277742 205277742 C A NUAK2 Silent p.R157R 0.42 TCGA-DD-AACB-01 1 205628256 205628256 C A SLC45A3 3'UTR 0.41 TCGA-DD-AACB-01 1 247978833 247978833 A T OR14A16 Missense_Mutation p.L67M 0.16 deleterious(0.01) possibly_damaging(0.899) TCGA-DD-AACB-01 1 248004235 248004235 A G OR11L1 Missense_Mutation p.Y322H 0.36 deleterious_low_confidence(0.01) unknown(0) TCGA-DD-AACB-01 1 26900660 26900660 C A RPS6KA1 Silent p.R735R 0.33 TCGA-DD-AACB-01 1 39797752 39797752 A C MACF1 Intron 0.18 TCGA-DD-AACB-01 1 47746604 47746604 G A STIL Missense_Mutation p.P509L 0.42 tolerated(0.87) benign(0.015) TCGA-DD-AACB-01 1 70905003 70905003 G T CTH 3'UTR 0.40 TCGA-DD-AACB-01 20 23065729 23065729 G A CD93 Silent p.C367C 0.62 TCGA-DD-AACB-01 20 35812641 35812641 G T RPN2 Silent p.T24T 0.16 TCGA-DD-AACB-01 20 39992390 39992390 C A EMILIN3 Silent p.T134T 0.17 TCGA-DD-AACB-01 20 40827954 40827954 T A PTPRT Missense_Mutation p.K806I 0.12 deleterious(0.01) benign(0.084) TCGA-DD-AACB-01 20 44692024 44692024 C T NCOA5 Missense_Mutation p.M375I 0.57 tolerated(0.16) benign(0.004) TCGA-DD-AACB-01 20 58489238 58489238 G A SYCP2 Silent p.L235L 0.07 TCGA-DD-AACB-01 20 5903753 5903754 - G CHGB Frame_Shift_Ins p.E323Gfs*18 0.13 TCGA-DD-AACB-01 20 62172284 62172284 G A SRMS Missense_Mutation p.P452S 0.16 tolerated(0.13) benign(0.136) TCGA-DD-AACB-01 22 21470354 21470354 G A KB-1592A4.15 RNA 0.24 TCGA-DD-AACB-01 22 30640879 30640879 C T LIF Silent p.A21A 0.04 TCGA-DD-AACB-01 22 32108268 32108268 T C PRR14L Missense_Mutation p.M1853V 0.42 tolerated(0.11) probably_damaging(0.943) TCGA-DD-AACB-01 22 50655887 50655887 C T SELO 3'UTR 0.44 TCGA-DD-AACB-01 2 121107526 121107526 G A INHBB 3'UTR 0.36 TCGA-DD-AACB-01 2 131103253 131103253 C T IMP4 Silent p.H140H 0.42 TCGA-DD-AACB-01 2 131812878 131812878 T A FAM168B Missense_Mutation p.M148L 0.45 deleterious_low_confidence(0.03) possibly_damaging(0.743) TCGA-DD-AACB-01 2 159481723 159481723 G A PKP4 Missense_Mutation p.G313R 0.36 deleterious(0) possibly_damaging(0.824) TCGA-DD-AACB-01 2 160027239 160027239 C T TANC1 Missense_Mutation p.S425F 0.49 deleterious(0.03) probably_damaging(0.999) TCGA-DD-AACB-01 2 174047653 174047653 A G MLTK Missense_Mutation p.I107V 0.40 tolerated(0.21) benign(0.078) TCGA-DD-AACB-01 2 175292518 175292518 A G SCRN3 Silent p.Q390Q 0.28 TCGA-DD-AACB-01 2 196619135 196619135 G T DNAH7 Missense_Mutation p.T3897K 0.30 tolerated(0.36) benign(0.05) TCGA-DD-AACB-01 2 206562324 206562324 G A NRP2 Missense_Mutation p.G44S 0.43 deleterious(0) probably_damaging(0.94) TCGA-DD-AACB-01 2 21256268 21256268 G A APOB Nonsense_Mutation p.Q343* 0.44 TCGA-DD-AACB-01 2 230656743 230656743 C T TRIP12 Silent p.R1343R 0.44 TCGA-DD-AACB-01 2 232577746 232577746 G T PTMA 3'UTR 0.35 TCGA-DD-AACB-01 3 128991702 128991702 C T COPG1 Silent p.P737P 0.20 TCGA-DD-AACB-01 3 133674014 133674014 C T SLCO2A1 Missense_Mutation p.E141K 0.29 tolerated(0.08) benign(0.024) TCGA-DD-AACB-01 3 17051428 17051429 - A PLCL2 Frame_Shift_Ins p.N73Kfs*12 0.18 TCGA-DD-AACB-01 3 195507945 195507945 G T MUC4 Silent p.T3502T 0.18 TCGA-DD-AACB-01 3 195507946 195507946 G T MUC4 Missense_Mutation p.T3502N 0.18 possibly_damaging(0.704) TCGA-DD-AACB-01 3 37034022 37034022 C T EPM2AIP1 Missense_Mutation p.A183T 0.17 tolerated(1) benign(0.224) TCGA-DD-AACB-01 3 41266098 41266098 A G CTNNB1 Missense_Mutation p.D32G 0.25 deleterious(0.01) possibly_damaging(0.452) TCGA-DD-AACB-01 3 42265035 42265035 G T TRAK1 Missense_Mutation p.V890L 0.55 tolerated(0.35) benign(0.05) TCGA-DD-AACB-01 3 48667324 48667324 C A SLC26A6 Missense_Mutation p.V504L 0.27 deleterious(0.01) benign(0.134) TCGA-DD-AACB-01 3 62860452 62860452 C T CADPS Missense_Mutation p.G85S 0.43 tolerated(1) unknown(0) TCGA-DD-AACB-01 3 68466449 68466449 G A FAM19A1 Silent p.V46V 0.10 TCGA-DD-AACB-01 3 77671422 77671422 C A ROBO2 Missense_Mutation p.P1216Q 0.51 deleterious(0) possibly_damaging(0.884) TCGA-DD-AACB-01 3 95374424 95374424 T A MTHFD2P1 RNA 0.52 TCGA-DD-AACB-01 4 114208800 114208800 A C ANK2 Missense_Mutation p.K707Q 0.38 probably_damaging(0.994) TCGA-DD-AACB-01 4 177136711 177136711 A - ASB5 3'UTR 0.35 TCGA-DD-AACB-01 4 5461929 5461929 G A STK32B Missense_Mutation p.A295T 0.31 tolerated(0.13) benign(0.019) TCGA-DD-AACB-01 4 88258338 88258339 - A HSD17B11 3'UTR 0.29 TCGA-DD-AACB-01 4 89618757 89618768 TGACCAGCCGCG - NAP1L5 In_Frame_Del p.S46_Q50delinsR 0.79 TCGA-DD-AACB-01 5 140202784 140202784 C T PCDHA5 Missense_Mutation p.T475M 0.22 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-DD-AACB-01 5 15928473 15928473 A T FBXL7 Missense_Mutation p.D201V 0.47 tolerated(0.08) probably_damaging(0.994) TCGA-DD-AACB-01 5 173416302 173416302 G A C5orf47 Silent p.S12S 0.24 TCGA-DD-AACB-01 5 176730344 176730360 CCCCGATCTCCGCTCGG - RAB24 5'UTR 0.55 TCGA-DD-AACB-01 5 63510007 63510007 G T RNF180 Missense_Mutation p.S285I 0.21 deleterious(0.01) possibly_damaging(0.766) TCGA-DD-AACB-01 5 66398386 66398386 T A MAST4 Missense_Mutation p.C365S 0.23 benign(0.202) TCGA-DD-AACB-01 6 14118268 14118268 A T CD83 Missense_Mutation p.Q42L 0.37 tolerated(0.13) benign(0.026) TCGA-DD-AACB-01 6 3104456 3104456 T C RIPK1 Intron 0.51 TCGA-DD-AACB-01 6 31868141 31868141 C T ZBTB12 Silent p.G314G 0.21 TCGA-DD-AACB-01 6 34004308 34004308 C G GRM4 Missense_Mutation p.G527R 0.23 deleterious(0) probably_damaging(1) TCGA-DD-AACB-01 6 42123239 42123239 A C GUCA1A 5'UTR 0.33 TCGA-DD-AACB-01 6 42196221 42196221 G A TRERF1 Silent p.P1155P 0.29 TCGA-DD-AACB-01 6 57393127 57393127 C T PRIM2 Silent p.S259S 0.10 TCGA-DD-AACB-01 7 102856928 102856928 G A DPY19L2P2 RNA 0.29 TCGA-DD-AACB-01 7 48416080 48416080 G A ABCA13 Missense_Mutation p.G3749D 0.36 benign(0.133) TCGA-DD-AACB-01 7 5427597 5427597 T C TNRC18 Missense_Mutation p.K620E 0.27 probably_damaging(0.972) TCGA-DD-AACB-01 7 92734886 92734886 G A SAMD9 Silent p.Y175Y 0.29 TCGA-DD-AACB-01 8 113317133 113317133 G T CSMD3 Missense_Mutation p.P2695T 0.13 deleterious(0.02) probably_damaging(0.909) TCGA-DD-AACB-01 8 134114893 134114893 G A TG Intron 0.08 TCGA-DD-AACB-01 8 41542087 41542087 G A ANK1 Silent p.Y1545Y 0.66 TCGA-DD-AACB-01 8 71646299 71646299 T A XKR9 Nonsense_Mutation p.C254* 0.08 TCGA-DD-AACB-01 9 139568320 139568320 C A AGPAT2 Missense_Mutation p.V241F 0.64 deleterious(0) possibly_damaging(0.638) TCGA-DD-AACB-01 9 23762193 23762193 T C ELAVL2 Missense_Mutation p.T14A 0.31 tolerated_low_confidence(0.39) benign(0.002) TCGA-DD-AACB-01 9 27330565 27330565 C A MOB3B 3'UTR 0.42 TCGA-DD-AACB-01 9 35813496 35813496 G T HINT2 Silent p.V91V 0.29 TCGA-DD-AACB-01 9 73151320 73151320 G A TRPM3 Missense_Mutation p.A1558V 0.64 tolerated_low_confidence(0.14) possibly_damaging(0.447) TCGA-DD-AACB-01 9 842074 842074 G A DMRT1 Missense_Mutation p.C79Y 0.51 deleterious(0) probably_damaging(1) TCGA-DD-AACB-01 X 41379693 41379693 G A CASK Missense_Mutation p.P916S 0.70 deleterious(0) probably_damaging(1) TCGA-DD-AACB-01 X 92927344 92927344 C A NAP1L3 Missense_Mutation p.K320N 0.32 deleterious(0) probably_damaging(0.937) TCGA-DD-AACC-01 10 106128252 106128252 T G CCDC147 Missense_Mutation p.N288K 0.13 tolerated(0.29) benign(0.257) TCGA-DD-AACC-01 10 123970808 123970808 G T TACC2 Missense_Mutation p.G2290C 0.14 probably_damaging(1) TCGA-DD-AACC-01 10 62551796 62551796 T C CDK1 Missense_Mutation p.L213P 0.08 deleterious(0) probably_damaging(0.997) TCGA-DD-AACC-01 10 69748547 69748547 A G HERC4 Missense_Mutation p.V560A 0.14 deleterious(0.05) benign(0.111) TCGA-DD-AACC-01 10 73563052 73563052 G T CDH23 Missense_Mutation p.A343S 0.09 deleterious(0.01) probably_damaging(0.982) TCGA-DD-AACC-01 11 118771950 118771950 C T BCL9L Silent p.K834K 0.24 TCGA-DD-AACC-01 11 120318992 120318992 A C ARHGEF12 Missense_Mutation p.K558Q 0.17 deleterious(0) possibly_damaging(0.809) TCGA-DD-AACC-01 11 130785826 130785826 T C SNX19 Silent p.T3T 0.21 TCGA-DD-AACC-01 11 4676443 4676443 T C OR51E1 3'UTR 0.09 TCGA-DD-AACC-01 11 63885617 63885617 G A FLRT1 Silent p.P626P 0.13 TCGA-DD-AACC-01 11 77409660 77409660 C T RSF1 Missense_Mutation p.E863K 0.17 tolerated(0.13) benign(0.333) TCGA-DD-AACC-01 12 109692117 109692117 G T ACACB Missense_Mutation p.M2048I 0.23 deleterious(0.04) possibly_damaging(0.517) TCGA-DD-AACC-01 12 122691390 122691390 C A B3GNT4 Missense_Mutation p.L198M 0.11 deleterious(0) probably_damaging(0.98) TCGA-DD-AACC-01 12 13906726 13906726 A T GRIN2B Missense_Mutation p.Y179N 0.06 deleterious(0) probably_damaging(0.948) TCGA-DD-AACC-01 12 52940080 52940080 C T KRT71 Missense_Mutation p.E439K 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AACC-01 12 6669440 6669440 C A NOP2 Missense_Mutation p.R571L 0.16 deleterious(0) probably_damaging(0.981) TCGA-DD-AACC-01 12 67691629 67691629 A G CAND1 Missense_Mutation p.R284G 0.15 tolerated(0.22) benign(0.443) TCGA-DD-AACC-01 13 101184377 101184377 G A GGACT 3'UTR 0.13 TCGA-DD-AACC-01 13 109859260 109859260 G T MYO16 3'UTR 0.15 TCGA-DD-AACC-01 13 53421770 53421770 G T PCDH8 Missense_Mutation p.L268M 0.22 deleterious(0.01) probably_damaging(0.918) TCGA-DD-AACC-01 13 61989314 61989314 G A PCDH20 5'UTR 0.18 TCGA-DD-AACC-01 14 50089289 50089289 A G MGAT2 Missense_Mutation p.R435G 0.10 deleterious(0) probably_damaging(1) TCGA-DD-AACC-01 14 53540535 53540535 T C DDHD1 Silent p.E440E 0.13 TCGA-DD-AACC-01 14 74726418 74726418 C A VSX2 Silent p.P231P 0.19 TCGA-DD-AACC-01 15 29997825 29997825 G A TJP1 Missense_Mutation p.P1659S 0.15 deleterious(0) probably_damaging(0.916) TCGA-DD-AACC-01 15 42127787 42127787 A G JMJD7-PLA2G4B Silent p.G158G 0.07 TCGA-DD-AACC-01 15 66783072 66783072 A G MAP2K1 3'UTR 0.17 TCGA-DD-AACC-01 15 66857654 66857654 G A LCTL Missense_Mutation p.P17L 0.19 tolerated(0.43) benign(0) TCGA-DD-AACC-01 15 78758781 78758781 G A IREB2 Silent p.Q193Q 0.10 TCGA-DD-AACC-01 16 29848234 29848234 C T MVP Silent p.V288V 0.20 TCGA-DD-AACC-01 16 396285 396285 C - AXIN1 Frame_Shift_Del p.W247* 0.10 TCGA-DD-AACC-01 16 57796115 57796115 T G KIFC3 Missense_Mutation p.K562T 0.24 deleterious(0) possibly_damaging(0.742) TCGA-DD-AACC-01 16 58572172 58572172 T C CNOT1 Splice_Site p.X1712_splice 0.11 TCGA-DD-AACC-01 16 58709852 58709852 A G SLC38A7 Missense_Mutation p.M292T 0.12 tolerated(0.82) benign(0) TCGA-DD-AACC-01 16 58709858 58709858 A T SLC38A7 Missense_Mutation p.V290D 0.11 deleterious(0) probably_damaging(0.989) TCGA-DD-AACC-01 16 61687819 61687819 T C CDH8 Missense_Mutation p.K698R 0.14 tolerated(1) benign(0.007) TCGA-DD-AACC-01 16 64981378 64981378 C A CDH11 3'UTR 0.09 TCGA-DD-AACC-01 17 15903433 15903433 G T TTC19 Silent p.A62A 0.18 TCGA-DD-AACC-01 17 1945365 1945365 G T OVCA2 Silent p.R8R 0.20 TCGA-DD-AACC-01 17 41738603 41738603 G T MEOX1 Missense_Mutation p.D100E 0.14 tolerated(1) benign(0) TCGA-DD-AACC-01 17 61623214 61623214 T C KCNH6 Missense_Mutation p.F979S 0.06 deleterious_low_confidence(0) benign(0.039) TCGA-DD-AACC-01 18 72998511 72998511 G T TSHZ1 Missense_Mutation p.Q338H 0.05 deleterious(0.05) probably_damaging(0.928) TCGA-DD-AACC-01 19 1108865 1108865 G A SBNO2 Missense_Mutation p.R1177C 0.07 deleterious(0.03) probably_damaging(0.915) TCGA-DD-AACC-01 19 22155400 22155400 T G ZNF208 Missense_Mutation p.K812N 0.12 deleterious(0.03) unknown(0) TCGA-DD-AACC-01 19 2234070 2234070 A G PLEKHJ1 Intron 0.05 TCGA-DD-AACC-01 19 35842806 35842806 C T FFAR1 Missense_Mutation p.R118W 0.21 deleterious(0) benign(0.212) TCGA-DD-AACC-01 19 36207469 36207469 C T ZBTB32 Missense_Mutation p.P427S 0.11 deleterious(0) possibly_damaging(0.641) TCGA-DD-AACC-01 19 3623843 3623843 G A CACTIN Missense_Mutation p.T162M 0.18 deleterious(0.03) possibly_damaging(0.877) TCGA-DD-AACC-01 19 42585300 42585300 C A ZNF574 Missense_Mutation p.H848N 0.08 tolerated(0.24) benign(0.403) TCGA-DD-AACC-01 19 4310529 4310529 G A FSD1 Missense_Mutation p.M142I 0.07 deleterious(0.01) benign(0.003) TCGA-DD-AACC-01 19 4694598 4694598 C A DPP9 Intron 0.24 TCGA-DD-AACC-01 19 52472325 52472325 C A ZNF350 Silent p.L25L 0.17 TCGA-DD-AACC-01 19 57037267 57037267 A C ZNF471 Missense_Mutation p.K611Q 0.15 tolerated(0.06) probably_damaging(0.991) TCGA-DD-AACC-01 1 100366399 100366399 T G AGL Silent p.P1190P 0.17 TCGA-DD-AACC-01 1 118574431 118574431 C A SPAG17 Missense_Mutation p.V1165L 0.19 tolerated(0.1) benign(0.153) TCGA-DD-AACC-01 1 150204152 150204152 G A ANP32E Missense_Mutation p.S56L 0.10 deleterious(0) probably_damaging(0.993) TCGA-DD-AACC-01 1 193045776 193045776 A G TROVE2 Missense_Mutation p.K316R 0.15 tolerated(0.28) benign(0.008) TCGA-DD-AACC-01 1 232649711 232649711 C T SIPA1L2 Missense_Mutation p.E459K 0.32 deleterious(0) probably_damaging(0.995) TCGA-DD-AACC-01 1 23376902 23376902 G T KDM1A Missense_Mutation p.Q200H 0.05 deleterious(0.05) possibly_damaging(0.496) TCGA-DD-AACC-01 20 2640223 2640223 T C IDH3B Missense_Mutation p.Y340C 0.05 tolerated(0.06) possibly_damaging(0.843) TCGA-DD-AACC-01 20 58330406 58330406 C A PHACTR3 Missense_Mutation p.H176Q 0.08 tolerated(0.48) benign(0.002) TCGA-DD-AACC-01 21 39755298 39755298 C A ERG 3'UTR 0.14 TCGA-DD-AACC-01 22 16449128 16449128 A T OR11H1 Missense_Mutation p.F226Y 0.14 deleterious(0) probably_damaging(0.944) TCGA-DD-AACC-01 2 196593046 196593046 G A SLC39A10 Missense_Mutation p.M770I 0.17 tolerated(0.08) possibly_damaging(0.889) TCGA-DD-AACC-01 2 209345847 209345847 G T PTH2R Missense_Mutation p.W345L 0.08 tolerated(0.19) possibly_damaging(0.9) TCGA-DD-AACC-01 2 48010529 48010544 GCTGGGCCTGGGCCCA - MSH6 Frame_Shift_Del p.A53Gfs*23 0.16 TCGA-DD-AACC-01 2 70315623 70315623 A G PCBP1 Missense_Mutation p.M250V 0.16 tolerated(0.31) benign(0.022) TCGA-DD-AACC-01 3 108373111 108373111 A G DZIP3 Missense_Mutation p.K718R 0.17 deleterious_low_confidence(0.04) probably_damaging(0.96) TCGA-DD-AACC-01 3 121209009 121209009 A T POLQ Missense_Mutation p.F923L 0.18 tolerated(0.73) benign(0.001) TCGA-DD-AACC-01 3 124592378 124592378 C G ITGB5 Missense_Mutation p.G24A 0.17 deleterious(0.03) unknown(0) TCGA-DD-AACC-01 3 126071187 126071235 GGAACAGCGCTCTCTCCCGCTGGACCCAGGATGGAGGTGGCTCTTGTGT - KLF15 Frame_Shift_Del p.H178Lfs*35 0.11 TCGA-DD-AACC-01 3 130346161 130346161 A C COL6A6 Splice_Site p.X1648_splice 0.17 TCGA-DD-AACC-01 3 15300545 15300545 T C SH3BP5 Missense_Mutation p.T228A 0.06 tolerated(0.73) benign(0.005) TCGA-DD-AACC-01 3 179304415 179304415 T C ACTL6A Missense_Mutation p.S402P 0.18 deleterious(0) probably_damaging(0.988) TCGA-DD-AACC-01 3 179304422 179304422 T G ACTL6A Splice_Site p.X403_splice 0.21 TCGA-DD-AACC-01 3 185146704 185146704 G T MAP3K13 Missense_Mutation p.G112V 0.13 tolerated(0.06) benign(0.197) TCGA-DD-AACC-01 3 187446200 187446200 C T BCL6 Silent p.T496T 0.17 TCGA-DD-AACC-01 3 24009404 24009404 G T NR1D2 Missense_Mutation p.G478V 0.21 deleterious(0) probably_damaging(1) TCGA-DD-AACC-01 3 27490188 27490188 T G SLC4A7 Missense_Mutation p.K72N 0.12 tolerated(0.11) benign(0.199) TCGA-DD-AACC-01 3 49060733 49060733 G C NDUFAF3 3'UTR 0.10 TCGA-DD-AACC-01 3 62860303 62860303 A C CADPS Missense_Mutation p.N134K 0.14 deleterious(0.02) unknown(0) TCGA-DD-AACC-01 3 7620315 7620315 C T GRM7 Silent p.T574T 0.10 TCGA-DD-AACC-01 4 114302705 114302705 C T ANK2 3'UTR 0.05 TCGA-DD-AACC-01 4 15443998 15443998 G A C1QTNF7 Missense_Mutation p.A156T 0.20 deleterious(0) probably_damaging(0.999) TCGA-DD-AACC-01 4 155507643 155507643 G A FGA Missense_Mutation p.S313F 0.09 deleterious_low_confidence(0.03) possibly_damaging(0.485) TCGA-DD-AACC-01 4 3237461 3237461 G T HTT Missense_Mutation p.R2914L 0.07 probably_damaging(0.999) TCGA-DD-AACC-01 4 4249400 4249401 - A TMEM128 5'UTR 0.16 TCGA-DD-AACC-01 4 46060363 46060363 A G GABRG1 Missense_Mutation p.F263L 0.16 tolerated(0.07) benign(0.371) TCGA-DD-AACC-01 4 62363023 62363023 G A LPHN3 Silent p.S4S 0.06 TCGA-DD-AACC-01 4 71895326 71895326 G T DCK 3'UTR 0.29 TCGA-DD-AACC-01 5 126758426 126758426 C T MEGF10 Missense_Mutation p.P552L 0.21 deleterious(0) benign(0.15) TCGA-DD-AACC-01 5 127483379 127483379 T G SLC12A2 Silent p.S613S 0.30 TCGA-DD-AACC-01 5 137897301 137897301 T G HSPA9 Missense_Mutation p.I384L 0.25 tolerated_low_confidence(0.6) benign(0.004) TCGA-DD-AACC-01 5 169509947 169509947 A G DOCK2 3'UTR 0.35 TCGA-DD-AACC-01 5 173382953 173382953 A T CPEB4 Missense_Mutation p.D668V 0.26 deleterious(0) probably_damaging(0.995) TCGA-DD-AACC-01 5 175395152 175395152 C G THOC3 Silent p.S20S 0.10 TCGA-DD-AACC-01 5 179155749 179155749 C A CANX 3'UTR 0.28 TCGA-DD-AACC-01 5 33455170 33455170 G T TARS Missense_Mutation p.G225W 0.13 deleterious(0) possibly_damaging(0.745) TCGA-DD-AACC-01 5 3599554 3599556 CAT - IRX1 In_Frame_Del p.I166del 0.08 TCGA-DD-AACC-01 5 38958545 38958545 C A RICTOR Missense_Mutation p.R807I 0.02 deleterious(0) probably_damaging(0.999) TCGA-DD-AACC-01 5 39135012 39135012 G T FYB Silent p.I550I 0.12 TCGA-DD-AACC-01 6 13979931 13979931 A T RNF182 3'UTR 0.14 TCGA-DD-AACC-01 6 149340294 149340294 T A UST Missense_Mutation p.L234H 0.21 deleterious(0) possibly_damaging(0.895) TCGA-DD-AACC-01 6 18171702 18171702 G A KDM1B Missense_Mutation p.A176T 0.10 tolerated(0.57) benign(0.111) TCGA-DD-AACC-01 6 26108149 26108149 C T HIST1H1T Missense_Mutation p.R58Q 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-DD-AACC-01 6 33231842 33231842 G A VPS52 Silent p.V521V 0.12 TCGA-DD-AACC-01 6 43309850 43309850 C G ZNF318 Missense_Mutation p.G1126R 0.21 probably_damaging(1) TCGA-DD-AACC-01 6 91281491 91281491 T A MAP3K7 Missense_Mutation p.K52N 0.17 deleterious(0) probably_damaging(0.994) TCGA-DD-AACC-01 7 104758262 104758262 G T SRPK2 3'UTR 0.09 TCGA-DD-AACC-01 7 131895838 131895838 G A PLXNA4 Missense_Mutation p.T721M 0.09 deleterious(0) probably_damaging(0.977) TCGA-DD-AACC-01 7 2883632 2883632 C A GNA12 Missense_Mutation p.R55L 0.13 deleterious(0.02) probably_damaging(0.982) TCGA-DD-AACC-01 7 48626793 48626793 C T ABCA13 Missense_Mutation p.A4850V 0.08 benign(0.007) TCGA-DD-AACC-01 7 6476018 6476018 C T DAGLB Missense_Mutation p.G132S 0.13 tolerated(0.32) possibly_damaging(0.634) TCGA-DD-AACC-01 7 82544838 82544838 T C PCLO Missense_Mutation p.Y4155C 0.10 unknown(0) TCGA-DD-AACC-01 7 97363076 97363076 C A TAC1 Silent p.I55I 0.16 TCGA-DD-AACC-01 7 97482512 97482512 G A ASNS Missense_Mutation p.H446Y 0.18 tolerated(0.89) benign(0.009) TCGA-DD-AACC-01 7 98529221 98529221 A G TRRAP Missense_Mutation p.H1262R 0.13 benign(0.186) TCGA-DD-AACC-01 8 13356751 13356751 C T DLC1 Missense_Mutation p.C277Y 0.10 tolerated_low_confidence(0.14) benign(0.035) TCGA-DD-AACC-01 8 37697733 37697733 C A GPR124 Missense_Mutation p.P869H 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-DD-AACC-01 8 48647955 48647955 C T SPIDR Silent p.C897C 0.15 TCGA-DD-AACC-01 8 75274140 75274140 C T GDAP1 Missense_Mutation p.S169F 0.09 deleterious(0.01) possibly_damaging(0.726) TCGA-DD-AACC-01 8 98900398 98900398 A G MATN2 Missense_Mutation p.R24G 0.20 tolerated(0.08) benign(0.002) TCGA-DD-AACC-01 9 135545948 135545948 G A GTF3C4 5'UTR 0.17 TCGA-DD-AACC-01 9 136245946 136245946 C T C9orf96 Silent p.L43L 0.20 TCGA-DD-AACC-01 9 40774707 40774707 C G ZNF658 Missense_Mutation p.E190Q 0.10 tolerated(0.07) benign(0.08) TCGA-DD-AACC-01 9 96312923 96312923 C T FAM120A Nonsense_Mutation p.Q742* 0.09 TCGA-DD-AACC-01 X 101913776 101913776 G C GPRASP1 3'UTR 0.30 TCGA-DD-AACC-01 X 133119396 133119396 C G GPC3 Silent p.P27P 0.03 TCGA-DD-AACC-01 X 152128322 152128322 G T ZNF185 Missense_Mutation p.G528C 0.30 tolerated(0.23) benign(0.085) TCGA-DD-AACC-01 X 54783896 54783896 G T ITIH6 Missense_Mutation p.L871I 0.07 tolerated(0.06) benign(0.14) TCGA-DD-AACC-01 X 83129331 83129331 A C CYLC1 Missense_Mutation p.K539Q 0.03 deleterious(0.01) probably_damaging(0.949) TCGA-DD-AACD-01 10 105207130 105207130 A G CALHM2 Missense_Mutation p.F251L 0.07 tolerated(0.07) benign(0.318) TCGA-DD-AACD-01 10 105803274 105803274 G C COL17A1 Missense_Mutation p.P834A 0.08 probably_damaging(0.956) TCGA-DD-AACD-01 10 45499848 45499848 A G ZNF22 3'UTR 0.31 TCGA-DD-AACD-01 10 46121665 46121665 T C ZFAND4 Missense_Mutation p.K536E 0.32 deleterious(0) probably_damaging(0.993) TCGA-DD-AACD-01 10 69926386 69926386 G A MYPN Missense_Mutation p.V646M 0.12 tolerated(0.15) benign(0.297) TCGA-DD-AACD-01 10 73537540 73537540 T G C10orf54 5'Flank 0.31 TCGA-DD-AACD-01 10 81273913 81273913 T C EIF5AL1 3'UTR 0.13 TCGA-DD-AACD-01 10 99696049 99696049 C T CRTAC1 Missense_Mutation p.R100H 0.33 tolerated(0.21) benign(0.027) TCGA-DD-AACD-01 11 107463167 107463167 G C AP000889.3 Missense_Mutation p.R122P 0.28 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-DD-AACD-01 11 120831716 120831716 A T GRIK4 Missense_Mutation p.D658V 0.29 deleterious(0) probably_damaging(1) TCGA-DD-AACD-01 11 62290619 62290619 G A AHNAK Missense_Mutation p.P3757L 0.32 probably_damaging(1) TCGA-DD-AACD-01 11 63965043 63965043 G A STIP1 Missense_Mutation p.R293Q 0.13 deleterious(0.04) benign(0.053) TCGA-DD-AACD-01 11 64898776 64898776 A G SYVN1 Missense_Mutation p.F243L 0.32 deleterious(0) possibly_damaging(0.889) TCGA-DD-AACD-01 11 82536165 82536165 C T PRCP Splice_Site p.X446_splice 0.25 TCGA-DD-AACD-01 11 86017465 86017465 T G C11orf73 Missense_Mutation p.L70R 0.39 deleterious(0) probably_damaging(1) TCGA-DD-AACD-01 12 112147442 112147443 - AACAAATCTAA ACAD10 Frame_Shift_Ins p.E220Qfs*3 0.12 TCGA-DD-AACD-01 12 117723914 117723914 G C NOS1 Missense_Mutation p.L429V 0.39 deleterious(0) benign(0.42) TCGA-DD-AACD-01 12 26731667 26731667 T C ITPR2 Missense_Mutation p.I1537V 0.33 tolerated(0.09) benign(0.035) TCGA-DD-AACD-01 12 46246408 46246408 C T ARID2 Missense_Mutation p.S1501F 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.642) TCGA-DD-AACD-01 12 49364298 49364298 G A WNT10B Silent p.P5P 0.31 TCGA-DD-AACD-01 12 57995105 57995105 C A PIP4K2C Missense_Mutation p.H387N 0.25 deleterious(0.03) probably_damaging(0.909) TCGA-DD-AACD-01 12 68551852 68551852 C T IFNG Silent p.Q69Q 0.25 TCGA-DD-AACD-01 13 115048417 115048417 A G UPF3A Silent p.K140K 0.09 TCGA-DD-AACD-01 13 99947896 99947896 G A GPR183 Silent p.I168I 0.21 TCGA-DD-AACD-01 14 22102622 22102622 T G OR10G2 Missense_Mutation p.D126A 0.29 deleterious(0) probably_damaging(0.999) TCGA-DD-AACD-01 14 78184378 78184378 T G SNW1 3'UTR 0.23 TCGA-DD-AACD-01 14 78184406 78184406 T G SNW1 3'UTR 0.17 TCGA-DD-AACD-01 14 88892812 88892812 C G SPATA7 Silent p.P203P 0.26 TCGA-DD-AACD-01 15 100514721 100514721 G A ADAMTS17 Silent p.C1058C 0.31 TCGA-DD-AACD-01 15 76136004 76136004 G A UBE2Q2 5'UTR 0.29 TCGA-DD-AACD-01 15 79755561 79755561 G A KIAA1024 Silent p.L817L 0.28 TCGA-DD-AACD-01 15 83673758 83673758 A C C15orf40 Intron 0.40 TCGA-DD-AACD-01 15 91358483 91358483 C A BLM Missense_Mutation p.L1410I 0.11 deleterious(0) probably_damaging(0.997) TCGA-DD-AACD-01 16 1306936 1306936 G T TPSD1 Silent p.L131L 0.17 TCGA-DD-AACD-01 16 24202547 24202547 A T PRKCB Missense_Mutation p.K620I 0.35 deleterious(0) benign(0.309) TCGA-DD-AACD-01 16 30206055 30206055 C T SLX1A Intron 0.13 TCGA-DD-AACD-01 16 31409166 31409166 G C ITGAD Missense_Mutation p.K121N 0.35 tolerated(0.88) benign(0.01) TCGA-DD-AACD-01 16 67963973 67963973 C T CTRL Missense_Mutation p.C220Y 0.32 tolerated(0.12) possibly_damaging(0.497) TCGA-DD-AACD-01 16 88498840 88498841 - G ZNF469 Frame_Shift_Ins p.T1629Dfs*68 0.23 TCGA-DD-AACD-01 17 20910258 20910258 A C USP22 Missense_Mutation p.Y425D 0.13 deleterious(0.01) benign(0.125) TCGA-DD-AACD-01 17 27442455 27442455 C T MYO18A Silent p.P744P 0.34 TCGA-DD-AACD-01 17 39274487 39274487 G T KRTAP4-11 Silent p.P27P 0.41 TCGA-DD-AACD-01 17 39274488 39274488 G T KRTAP4-11 Missense_Mutation p.P27H 0.41 deleterious(0) unknown(0) TCGA-DD-AACD-01 17 42389993 42389993 C T RUNDC3A Silent p.I51I 0.37 TCGA-DD-AACD-01 17 48626198 48626198 A G SPATA20 Missense_Mutation p.H130R 0.42 deleterious(0) probably_damaging(0.995) TCGA-DD-AACD-01 17 62488797 62488797 T C POLG2 Missense_Mutation p.Q261R 0.32 tolerated(0.75) benign(0.178) TCGA-DD-AACD-01 18 43667308 43667308 T C ATP5A1 Missense_Mutation p.Q317R 0.43 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-DD-AACD-01 18 43667311 43667311 T C ATP5A1 Missense_Mutation p.K316R 0.42 deleterious_low_confidence(0) probably_damaging(1) TCGA-DD-AACD-01 18 48593405 48593405 G A SMAD4 Missense_Mutation p.G386S 0.28 deleterious(0.04) probably_damaging(1) TCGA-DD-AACD-01 18 54291666 54291666 T A TXNL1 Silent p.S74S 0.22 TCGA-DD-AACD-01 18 61449699 61449699 C G SERPINB7 Silent p.S31S 0.24 TCGA-DD-AACD-01 19 16678874 16678874 C A SLC35E1 Missense_Mutation p.C200F 0.24 tolerated(0.35) possibly_damaging(0.786) TCGA-DD-AACD-01 19 37880628 37880628 T G ZNF527 Missense_Mutation p.C559W 0.39 deleterious(0) probably_damaging(1) TCGA-DD-AACD-01 19 37880629 37880629 G T ZNF527 Missense_Mutation p.G560W 0.38 deleterious(0) probably_damaging(1) TCGA-DD-AACD-01 19 4171378 4171378 A G CREB3L3 Splice_Site p.X326_splice 0.28 TCGA-DD-AACD-01 19 45821217 45821217 C T CKM Missense_Mutation p.V72M 0.37 deleterious(0.02) possibly_damaging(0.749) TCGA-DD-AACD-01 19 46916802 46916802 C A CCDC8 5'UTR 0.38 TCGA-DD-AACD-01 19 5131976 5131976 T C KDM4B Missense_Mutation p.S622P 0.29 possibly_damaging(0.665) TCGA-DD-AACD-01 19 53959745 53959745 T G ZNF761 RNA 0.37 TCGA-DD-AACD-01 1 117948198 117948198 A T MAN1A2 Missense_Mutation p.R196W 0.34 deleterious(0) possibly_damaging(0.807) TCGA-DD-AACD-01 1 144916634 144916634 T C PDE4DIP Missense_Mutation p.K574R 0.15 tolerated(0.17) probably_damaging(0.951) TCGA-DD-AACD-01 1 152538316 152538316 T C LCE3E 3'UTR 0.25 TCGA-DD-AACD-01 1 157509048 157509048 G C FCRL5 Missense_Mutation p.I410M 0.25 deleterious(0) probably_damaging(1) TCGA-DD-AACD-01 1 158532619 158532619 T G OR6P1 Missense_Mutation p.Y259S 0.33 deleterious(0) probably_damaging(0.998) TCGA-DD-AACD-01 1 169761806 169761807 - T METTL18 Frame_Shift_Ins p.R344Kfs*5 0.22 TCGA-DD-AACD-01 1 243434288 243434288 C G SDCCAG8 Missense_Mutation p.L77V 0.33 deleterious(0) probably_damaging(0.999) TCGA-DD-AACD-01 1 248551453 248551453 C - OR2T6 Frame_Shift_Del p.T183Pfs*3 0.17 TCGA-DD-AACD-01 1 24998064 24998064 T C SRRM1 Missense_Mutation p.V863A 0.31 unknown(0) TCGA-DD-AACD-01 1 41449049 41449049 A G CTPS1 Silent p.S29S 0.32 TCGA-DD-AACD-01 1 46087108 46087108 G A CCDC17 Silent p.S411S 0.35 TCGA-DD-AACD-01 1 6279714 6279714 C A RNF207 3'UTR 0.42 TCGA-DD-AACD-01 1 6279719 6279719 A T RNF207 3'UTR 0.43 TCGA-DD-AACD-01 1 65305399 65305399 A G JAK1 Missense_Mutation p.L910P 0.31 deleterious(0) probably_damaging(0.996) TCGA-DD-AACD-01 1 7798171 7798171 A C CAMTA1 Missense_Mutation p.N1271H 0.35 tolerated_low_confidence(0.06) benign(0.229) TCGA-DD-AACD-01 1 95609466 95609466 C - TMEM56 Frame_Shift_Del p.N4Tfs*23 0.18 TCGA-DD-AACD-01 20 17207880 17207880 A G PCSK2 5'UTR 0.27 TCGA-DD-AACD-01 20 3214949 3214949 T G SLC4A11 Missense_Mutation p.L144F 0.27 tolerated(0.05) benign(0.209) TCGA-DD-AACD-01 20 37209925 37209925 A G ADIG Missense_Mutation p.D11G 0.25 deleterious(0.01) benign(0.275) TCGA-DD-AACD-01 20 61528235 61528235 G A DIDO1 Missense_Mutation p.P568S 0.31 benign(0.288) TCGA-DD-AACD-01 21 27372473 27372473 G T APP Missense_Mutation p.T297K 0.25 deleterious(0) probably_damaging(0.944) TCGA-DD-AACD-01 22 21065133 21065133 C T PI4KA Missense_Mutation p.M1979I 0.28 deleterious(0.01) benign(0.33) TCGA-DD-AACD-01 22 24581750 24581750 C T SUSD2 Missense_Mutation p.R398C 0.23 deleterious(0.03) probably_damaging(0.953) TCGA-DD-AACD-01 22 26890556 26890556 A T SRRD 3'UTR 0.46 TCGA-DD-AACD-01 22 44351329 44351329 C T SAMM50 5'UTR 0.34 TCGA-DD-AACD-01 22 50279247 50279247 A T ZBED4 Missense_Mutation p.E646V 0.28 deleterious(0) possibly_damaging(0.623) TCGA-DD-AACD-01 2 128466455 128466455 C A WDR33 Nonsense_Mutation p.E1193* 0.42 TCGA-DD-AACD-01 2 179600577 179600577 A G TTN Missense_Mutation p.S4866P 0.29 TCGA-DD-AACD-01 2 227924168 227924168 G T COL4A4 Missense_Mutation p.P779Q 0.33 probably_damaging(0.937) TCGA-DD-AACD-01 2 231236540 231236540 A G SP140L Intron 0.32 TCGA-DD-AACD-01 2 27260542 27260542 C A TMEM214 Missense_Mutation p.P375H 0.32 deleterious(0.01) benign(0.009) TCGA-DD-AACD-01 2 31414917 31414917 C T CAPN14 Missense_Mutation p.E388K 0.42 tolerated(0.36) benign(0.269) TCGA-DD-AACD-01 2 31625953 31625953 A G XDH Missense_Mutation p.V53A 0.28 deleterious(0.01) probably_damaging(0.986) TCGA-DD-AACD-01 2 45233483 45233483 G A SIX2 Silent p.S234S 0.30 TCGA-DD-AACD-01 2 62451833 62451833 A G B3GNT2 3'UTR 0.32 TCGA-DD-AACD-01 2 71361819 71361824 AGTGAC - MPHOSPH10 In_Frame_Del p.R330_T332delinsS 0.23 TCGA-DD-AACD-01 3 12963694 12963694 G T IQSEC1 Silent p.A607A 0.20 TCGA-DD-AACD-01 3 1367631 1367631 C A CNTN6 Missense_Mutation p.P360Q 0.26 tolerated(0.17) possibly_damaging(0.653) TCGA-DD-AACD-01 3 140401928 140401928 C A TRIM42 Missense_Mutation p.D322E 0.32 tolerated(1) benign(0.054) TCGA-DD-AACD-01 3 167086516 167086516 T C ZBBX Intron 0.41 TCGA-DD-AACD-01 3 37402755 37402755 A G GOLGA4 Intron 0.32 TCGA-DD-AACD-01 3 37476664 37476664 T - C3orf35 3'UTR 0.39 TCGA-DD-AACD-01 3 38159099 38159099 T C DLEC1 Silent p.S1494S 0.21 TCGA-DD-AACD-01 3 41266110 41266110 A C CTNNB1 Missense_Mutation p.H36P 0.29 deleterious(0.04) benign(0.397) TCGA-DD-AACD-01 4 138452132 138452132 C T PCDH18 Missense_Mutation p.E371K 0.32 deleterious(0.02) probably_damaging(1) TCGA-DD-AACD-01 4 139965849 139965849 G A CCRN4L Missense_Mutation p.E173K 0.26 tolerated(0.25) benign(0.142) TCGA-DD-AACD-01 4 5664973 5664973 C T EVC2 Missense_Mutation p.V336I 0.25 tolerated(0.44) benign(0.063) TCGA-DD-AACD-01 4 57797002 57797002 G A REST Missense_Mutation p.G660R 0.32 deleterious_low_confidence(0.05) benign(0.086) TCGA-DD-AACD-01 5 125918580 125918580 T C ALDH7A1 Silent p.L160L 0.52 TCGA-DD-AACD-01 5 150036328 150036328 C T SYNPO 3'Flank 0.33 TCGA-DD-AACD-01 5 169675638 169675638 G A LCP2 3'UTR 0.28 TCGA-DD-AACD-01 5 2747494 2747494 A G IRX2 Intron 0.23 TCGA-DD-AACD-01 6 27279335 27279335 G A POM121L2 Silent p.L205L 0.59 TCGA-DD-AACD-01 6 33259901 33259901 T G RGL2 Missense_Mutation p.K771T 0.20 deleterious(0) probably_damaging(0.968) TCGA-DD-AACD-01 6 72806711 72806711 C A RIMS1 Missense_Mutation p.A102E 0.54 deleterious(0) benign(0.343) TCGA-DD-AACD-01 6 75904605 75904605 T C COL12A1 Silent p.S44S 0.53 TCGA-DD-AACD-01 6 76386826 76386867 AATGAAATTGGTATAAAGAATAACATCTCCAATTTTTTTGCG TGC SENP6 In_Frame_Del p.N568_A581delinsC 0.34 TCGA-DD-AACD-01 6 79664528 79664529 - A PHIP Intron 0.32 TCGA-DD-AACD-01 7 100491063 100491063 T A ACHE Missense_Mutation p.N264I 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AACD-01 7 135370360 135370360 G C SLC13A4 Silent p.T505T 0.23 TCGA-DD-AACD-01 7 148892729 148892729 G A ZNF282 Silent p.Q16Q 0.48 TCGA-DD-AACD-01 7 150745974 150745974 T C ASIC3 Translation_Start_Site p.M1? 0.15 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-DD-AACD-01 7 158705686 158705686 A T WDR60 Missense_Mutation p.Q534L 0.43 deleterious(0.01) benign(0.403) TCGA-DD-AACD-01 7 30492539 30492539 T C NOD1 Missense_Mutation p.E165G 0.48 deleterious(0) probably_damaging(0.998) TCGA-DD-AACD-01 7 77408705 77408705 T A RSBN1L 3'UTR 0.06 TCGA-DD-AACD-01 7 84694822 84694822 A G SEMA3D Silent p.D212D 0.04 TCGA-DD-AACD-01 8 101612592 101612592 T C SNX31 Silent p.E253E 0.25 TCGA-DD-AACD-01 8 101965201 101965201 C T YWHAZ 5'UTR 0.34 TCGA-DD-AACD-01 8 73479945 73479945 G A KCNB2 5'UTR 0.35 TCGA-DD-AACD-01 8 74464065 74464065 T C STAU2 Intron 0.35 TCGA-DD-AACD-01 8 94730901 94730901 A G FAM92A1 Splice_Site p.X182_splice 0.32 TCGA-DD-AACD-01 8 95390434 95390434 T A RAD54B Missense_Mutation p.E830V 0.39 tolerated(0.17) benign(0.009) TCGA-DD-AACD-01 9 110247985 110247985 T C KLF4 3'UTR 0.29 TCGA-DD-AACD-01 9 127615862 127615862 G A WDR38 Missense_Mutation p.G18S 0.23 tolerated(0.72) benign(0.018) TCGA-DD-AACD-01 9 434955 434955 G A DOCK8 Missense_Mutation p.V1687M 0.33 deleterious(0) possibly_damaging(0.677) TCGA-DD-AACD-01 X 100507604 100507604 C T DRP2 Silent p.L626L 0.70 TCGA-DD-AACD-01 X 41048571 41048571 G A USP9X Missense_Mutation p.G1274S 0.05 tolerated(0.85) benign(0) TCGA-DD-AACE-01 10 11912120 11912120 G A PROSER2 Silent p.L341L 0.26 TCGA-DD-AACE-01 10 135180466 135180466 A T ECHS1 Silent p.A182A 0.36 TCGA-DD-AACE-01 10 17169878 17169878 T C CUBN Missense_Mutation p.I100V 0.56 tolerated(0.33) benign(0) TCGA-DD-AACE-01 10 44053561 44053561 T A ZNF239 5'UTR 0.06 TCGA-DD-AACE-01 10 65281215 65281215 G C REEP3 5'UTR 0.45 TCGA-DD-AACE-01 10 71158366 71158366 G A HK1 Silent p.L801L 0.28 TCGA-DD-AACE-01 11 113281524 113281524 G T DRD2 Missense_Mutation p.S419R 0.36 deleterious(0) probably_damaging(1) TCGA-DD-AACE-01 11 58477846 58477846 G A GLYAT Intron 0.26 TCGA-DD-AACE-01 11 64893195 64893195 C T MRPL49 Intron 0.29 TCGA-DD-AACE-01 12 112451198 112451198 A C ERP29 5'UTR 0.47 TCGA-DD-AACE-01 12 123475098 123475098 C T PITPNM2 Missense_Mutation p.A855T 0.38 tolerated(0.07) probably_damaging(0.999) TCGA-DD-AACE-01 12 40964311 40964311 C T MUC19 3'UTR 0.33 TCGA-DD-AACE-01 12 51857460 51857460 T A SLC4A8 Missense_Mutation p.H437Q 0.45 tolerated(0.41) benign(0.154) TCGA-DD-AACE-01 12 58019464 58019464 G T SLC26A10 Missense_Mutation p.G543V 0.39 tolerated(0.05) benign(0.049) TCGA-DD-AACE-01 13 100623989 100623989 G T ZIC5 5'UTR 0.28 TCGA-DD-AACE-01 13 110822980 110822980 C A COL4A1 Missense_Mutation p.G1219V 0.25 probably_damaging(0.998) TCGA-DD-AACE-01 13 46425635 46425635 G T SIAH3 Missense_Mutation p.L44I 0.54 deleterious_low_confidence(0.01) possibly_damaging(0.492) TCGA-DD-AACE-01 14 105415678 105415678 C T AHNAK2 Missense_Mutation p.S2037N 0.28 probably_damaging(0.98) TCGA-DD-AACE-01 14 29237416 29237416 T A FOXG1 Missense_Mutation p.S311T 0.20 deleterious(0.03) benign(0.277) TCGA-DD-AACE-01 14 52520493 52520493 T C NID2 Silent p.P411P 0.33 TCGA-DD-AACE-01 14 55515928 55515930 AGG - SOCS4 3'UTR 0.32 TCGA-DD-AACE-01 14 86092606 86092606 T A FLRT2 3'UTR 0.35 TCGA-DD-AACE-01 14 94173074 94173074 C T UNC79 Missense_Mutation p.R2401C 0.38 deleterious(0) probably_damaging(0.997) TCGA-DD-AACE-01 15 23260819 23260819 C A GOLGA8I Missense_Mutation p.S200R 0.14 deleterious(0.04) probably_damaging(0.937) TCGA-DD-AACE-01 15 32323130 32323130 C A CHRNA7 Missense_Mutation p.L58I 0.63 deleterious(0) probably_damaging(1) TCGA-DD-AACE-01 15 90145127 90145127 A G TICRR Silent p.S829S 0.33 TCGA-DD-AACE-01 15 99645637 99645637 A C SYNM Missense_Mutation p.T78P 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-DD-AACE-01 16 30369226 30369226 G T TBC1D10B 3'UTR 0.29 TCGA-DD-AACE-01 16 48173219 48173219 T C ABCC12 Missense_Mutation p.Y229C 0.27 tolerated(0.16) benign(0.021) TCGA-DD-AACE-01 16 71660319 71660319 C G MARVELD3 Missense_Mutation p.Q63E 0.23 tolerated(0.71) unknown(0) TCGA-DD-AACE-01 17 39998197 39998197 C T KLHL10 Missense_Mutation p.P106L 0.22 tolerated(0.3) benign(0.041) TCGA-DD-AACE-01 17 41585264 41585264 C A DHX8 Missense_Mutation p.P733T 0.62 deleterious(0) possibly_damaging(0.854) TCGA-DD-AACE-01 17 42956967 42956967 C T EFTUD2 Missense_Mutation p.R220H 0.65 deleterious(0.01) probably_damaging(0.998) TCGA-DD-AACE-01 17 45886525 45886525 C A OSBPL7 Missense_Mutation p.R696L 0.60 deleterious(0.01) benign(0.133) TCGA-DD-AACE-01 17 48559662 48559662 T G RSAD1 Missense_Mutation p.S229A 0.58 deleterious(0) benign(0.019) TCGA-DD-AACE-01 17 61904520 61904520 T G PSMC5 5'Flank 0.73 TCGA-DD-AACE-01 17 66978770 66978770 C T ABCA9 Silent p.L1551L 0.26 TCGA-DD-AACE-01 17 7139048 7139048 A C PHF23 Missense_Mutation p.I370S 0.57 deleterious(0) benign(0.042) TCGA-DD-AACE-01 17 74015086 74015086 C T EVPL Missense_Mutation p.R398Q 0.36 tolerated(0.29) benign(0.004) TCGA-DD-AACE-01 17 7576863 7576863 A - TP53 Frame_Shift_Del p.F328Sfs*17 0.37 TCGA-DD-AACE-01 18 56963750 56963750 G A CPLX4 3'UTR 0.56 TCGA-DD-AACE-01 19 11727702 11727702 A G ZNF627 Silent p.P128P 0.39 TCGA-DD-AACE-01 19 17626986 17626986 A G PGLS Missense_Mutation p.H98R 0.31 tolerated(0.18) benign(0.063) TCGA-DD-AACE-01 19 31767266 31767266 A G TSHZ3 3'UTR 0.35 TCGA-DD-AACE-01 19 3531769 3531769 G A FZR1 Missense_Mutation p.A260T 0.07 tolerated(0.39) benign(0.201) TCGA-DD-AACE-01 19 35533367 35533367 G T HPN 5'UTR 0.44 TCGA-DD-AACE-01 19 4422571 4422571 G A CHAF1A Silent p.E342E 0.29 TCGA-DD-AACE-01 19 46095309 46095309 G A GPR4 5'UTR 0.38 TCGA-DD-AACE-01 19 55740251 55740251 C T TMEM86B 5'UTR 0.39 TCGA-DD-AACE-01 19 56671571 56671571 C T ZNF444 3'UTR 0.14 TCGA-DD-AACE-01 1 115256600 115256600 C T NRAS Splice_Site p.X38_splice 0.64 TCGA-DD-AACE-01 1 152057498 152057498 T C TCHHL1 Missense_Mutation p.H887R 0.34 tolerated(0.22) benign(0.002) TCGA-DD-AACE-01 1 153745721 153745721 C T INTS3 Missense_Mutation p.S1035F 0.77 deleterious(0) possibly_damaging(0.571) TCGA-DD-AACE-01 1 154842061 154842061 C T KCNN3 Missense_Mutation p.G127D 0.19 tolerated_low_confidence(0.2) probably_damaging(0.996) TCGA-DD-AACE-01 1 169555596 169555596 A C F5 Missense_Mutation p.V10G 0.65 deleterious(0) possibly_damaging(0.795) TCGA-DD-AACE-01 1 183510238 183510238 G A SMG7 Missense_Mutation p.R472K 0.14 tolerated(0.4) benign(0.13) TCGA-DD-AACE-01 1 230838957 230838957 G A AGT Missense_Mutation p.A463V 0.39 tolerated(0.09) benign(0.288) TCGA-DD-AACE-01 1 236590697 236590697 G C EDARADD Missense_Mutation p.E56Q 0.15 tolerated(0.18) benign(0.019) TCGA-DD-AACE-01 1 247275580 247275580 G A C1orf229 5'UTR 0.18 TCGA-DD-AACE-01 1 32131184 32131184 C T COL16A1 Silent p.P1164P 0.30 TCGA-DD-AACE-01 1 3406952 3406952 G T MEGF6 3'UTR 0.29 TCGA-DD-AACE-01 1 43296622 43296622 T A ERMAP Missense_Mutation p.L90Q 0.53 tolerated(0.06) benign(0.01) TCGA-DD-AACE-01 1 45805609 45805609 C A MUTYH Intron 0.29 TCGA-DD-AACE-01 20 3679945 3679945 C A SIGLEC1 Missense_Mutation p.A564S 0.54 tolerated(0.23) benign(0.191) TCGA-DD-AACE-01 20 9510476 9510476 A T LAMP5 3'UTR 0.54 TCGA-DD-AACE-01 2 10580969 10580969 G A ODC1 Missense_Mutation p.P423S 0.47 tolerated(0.47) benign(0.001) TCGA-DD-AACE-01 2 130872600 130872600 C T POTEF Missense_Mutation p.A222T 0.34 deleterious_low_confidence(0.04) probably_damaging(0.947) TCGA-DD-AACE-01 2 149803415 149803415 A G KIF5C Missense_Mutation p.M198V 0.41 deleterious(0) possibly_damaging(0.485) TCGA-DD-AACE-01 2 179500897 179500897 T A TTN Missense_Mutation p.S13801C 0.40 TCGA-DD-AACE-01 2 207174808 207174808 A G ZDBF2 Silent p.E1852E 0.40 TCGA-DD-AACE-01 2 212483999 212483999 C - ERBB4 Frame_Shift_Del p.G735Vfs*10 0.09 TCGA-DD-AACE-01 2 228141109 228141109 G T COL4A3 Nonsense_Mutation p.G646* 0.35 TCGA-DD-AACE-01 2 239353215 239353215 G T ASB1 Missense_Mutation p.V243F 0.05 deleterious(0) probably_damaging(1) TCGA-DD-AACE-01 2 32774378 32774378 A G BIRC6 Splice_Site p.X4326_splice 0.39 TCGA-DD-AACE-01 2 33952316 33952316 G T AC009499.1 Intron 0.45 TCGA-DD-AACE-01 2 75113492 75113492 C T HK2 Silent p.D669D 0.35 TCGA-DD-AACE-01 3 119367248 119367248 A T POPDC2 Missense_Mutation p.C290S 0.48 tolerated(0.71) benign(0.001) TCGA-DD-AACE-01 3 137849889 137849889 G A A4GNT Silent p.S70S 0.49 TCGA-DD-AACE-01 3 141595480 141595480 G C ATP1B3 5'UTR 0.45 TCGA-DD-AACE-01 3 169491124 169491124 G T MYNN 5'UTR 0.50 TCGA-DD-AACE-01 3 48698559 48698559 G A CELSR3 Silent p.R503R 0.25 TCGA-DD-AACE-01 3 48723213 48723213 A G NCKIPSD Missense_Mutation p.S10P 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-DD-AACE-01 3 52834993 52834993 C A ITIH3 Missense_Mutation p.P405H 0.19 tolerated(0.55) benign(0.125) TCGA-DD-AACE-01 3 58552686 58552686 T A FAM107A Intron 0.54 TCGA-DD-AACE-01 3 74334612 74334612 C T CNTN3 Missense_Mutation p.E850K 0.55 tolerated(0.17) benign(0.005) TCGA-DD-AACE-01 3 87308891 87308891 G T POU1F1 3'UTR 0.35 TCGA-DD-AACE-01 3 97868504 97868504 T A OR5H14 Missense_Mutation p.I92K 0.26 deleterious(0) probably_damaging(0.937) TCGA-DD-AACE-01 4 10567642 10567642 C G CLNK Missense_Mutation p.E95Q 0.43 tolerated(0.06) possibly_damaging(0.685) TCGA-DD-AACE-01 4 106601333 106601333 T G ARHGEF38 3'UTR 0.24 TCGA-DD-AACE-01 4 110772751 110772751 C T LRIT3 Missense_Mutation p.R70C 0.40 deleterious(0) probably_damaging(0.921) TCGA-DD-AACE-01 4 129028555 129028555 T G LARP1B Intron 0.37 TCGA-DD-AACE-01 4 159162713 159162713 A C TMEM144 Silent p.A285A 0.23 TCGA-DD-AACE-01 4 1657010 1657010 C A FAM53A Missense_Mutation p.G193C 0.38 deleterious(0) probably_damaging(0.997) TCGA-DD-AACE-01 4 56284075 56284077 CAA - TMEM165 In_Frame_Del p.Q239del 0.31 TCGA-DD-AACE-01 4 62897286 62897286 G T LPHN3 Missense_Mutation p.Q1115H 0.32 deleterious(0) benign(0.371) TCGA-DD-AACE-01 4 728388 728388 A G PCGF3 Intron 0.44 TCGA-DD-AACE-01 4 79360143 79360143 T C FRAS1 Silent p.D1818D 0.47 TCGA-DD-AACE-01 5 138658499 138658499 A C MATR3 Missense_Mutation p.E664A 0.57 tolerated(0.12) probably_damaging(0.952) TCGA-DD-AACE-01 5 140857013 140857013 C T PCDHGC3 Missense_Mutation p.R444C 0.60 tolerated(0.17) possibly_damaging(0.606) TCGA-DD-AACE-01 5 145890029 145890029 G T TCERG1 Missense_Mutation p.D1041Y 0.36 deleterious(0) unknown(0) TCGA-DD-AACE-01 5 149758589 149758589 A G TCOF1 Missense_Mutation p.Q821R 0.57 tolerated(0.54) possibly_damaging(0.672) TCGA-DD-AACE-01 5 150867883 150867883 C T SLC36A1 3'UTR 0.34 TCGA-DD-AACE-01 5 45267245 45267245 G T HCN1 Missense_Mutation p.P577T 0.29 deleterious(0) probably_damaging(0.996) TCGA-DD-AACE-01 5 45645564 45645564 A G HCN1 Missense_Mutation p.I191T 0.30 deleterious(0) benign(0.339) TCGA-DD-AACE-01 5 67576424 67576424 C T PIK3R1 Nonsense_Mutation p.Q235* 0.56 TCGA-DD-AACE-01 6 131958414 131958414 T G ENPP3 5'UTR 0.36 TCGA-DD-AACE-01 6 160677694 160677694 T C SLC22A2 Missense_Mutation p.N157S 0.29 deleterious(0.03) possibly_damaging(0.612) TCGA-DD-AACE-01 6 41250225 41250225 A G TREM1 Missense_Mutation p.V105A 0.09 tolerated(0.11) possibly_damaging(0.652) TCGA-DD-AACE-01 6 41757064 41757064 T C TOMM6 Nonstop_Mutation p.*75Qext*13 0.14 TCGA-DD-AACE-01 6 99285602 99285602 T C POU3F2 3'UTR 0.38 TCGA-DD-AACE-01 7 100187289 100187289 G A FBXO24 Missense_Mutation p.R9Q 0.08 deleterious_low_confidence(0) unknown(0) TCGA-DD-AACE-01 7 100420008 100420008 A T EPHB4 Silent p.P231P 0.42 TCGA-DD-AACE-01 7 127225186 127225186 C T GCC1 Silent p.L17L 0.48 TCGA-DD-AACE-01 7 148895528 148895528 A T ZNF282 Missense_Mutation p.Q90L 0.50 deleterious(0) benign(0.381) TCGA-DD-AACE-01 7 45005789 45005789 C A MYO1G Silent p.L680L 0.36 TCGA-DD-AACE-01 7 94996796 94996796 A T PON3 Missense_Mutation p.N124K 0.40 tolerated(0.11) benign(0.001) TCGA-DD-AACE-01 8 144375190 144375190 C G ZNF696 Missense_Mutation p.P7A 0.37 tolerated_low_confidence(1) possibly_damaging(0.539) TCGA-DD-AACE-01 8 28573960 28573960 G T EXTL3 Silent p.L128L 0.24 TCGA-DD-AACE-01 8 48848294 48848294 A T PRKDC Missense_Mutation p.V482E 0.50 probably_damaging(0.96) TCGA-DD-AACE-01 8 69046429 69046429 G C PREX2 Missense_Mutation p.W1301S 0.36 tolerated(0.09) benign(0) TCGA-DD-AACE-01 8 79629806 79629806 T C ZC2HC1A 3'UTR 0.25 TCGA-DD-AACE-01 9 100745670 100745670 G - ANP32B 5'UTR 0.36 TCGA-DD-AACE-01 9 72723289 72723289 T A MAMDC2 Missense_Mutation p.M104K 0.36 tolerated(0.07) benign(0.003) TCGA-DD-AACE-01 X 54264775 54264776 CT - WNK3 Frame_Shift_Del p.Q1338Rfs*25 0.42 TCGA-DD-AACF-01 10 105209604 105209604 G A CALHM2 Missense_Mutation p.T32M 0.48 deleterious(0) probably_damaging(0.983) TCGA-DD-AACF-01 10 60145257 60145257 C T TFAM 5'UTR 0.40 TCGA-DD-AACF-01 10 75548868 75548868 T C ZSWIM8 Missense_Mutation p.L126P 0.40 deleterious(0) probably_damaging(0.996) TCGA-DD-AACF-01 10 91098522 91098542 GAGTGTGTAACCAGATTGAAT - IFIT3 In_Frame_Del p.R37_F44delinsI 0.24 TCGA-DD-AACF-01 11 129754016 129754016 A G NFRKB Silent p.S280S 0.37 TCGA-DD-AACF-01 11 4148360 4148360 A G RRM1 Silent p.A522A 0.43 TCGA-DD-AACF-01 11 55579631 55579631 C T OR5L1 Missense_Mutation p.S230F 0.40 deleterious(0) probably_damaging(0.992) TCGA-DD-AACF-01 11 61111672 61111672 G T DAK Missense_Mutation p.E389D 0.46 deleterious(0.01) possibly_damaging(0.766) TCGA-DD-AACF-01 11 61286069 61286072 CTCG - SYT7 3'UTR 0.29 TCGA-DD-AACF-01 11 62484565 62484586 TTGTACTTAGTGACAATGGGCT GGGCA HNRNPUL2 Frame_Shift_Del p.Q619Lfs*26 0.24 TCGA-DD-AACF-01 11 62484586 62484586 T A HNRNPUL2 Missense_Mutation p.Q619L 0.32 tolerated(0.07) benign(0.006) TCGA-DD-AACF-01 11 62677945 62677945 G A CHRM1 Missense_Mutation p.R210C 0.37 deleterious(0) benign(0.258) TCGA-DD-AACF-01 11 77409582 77409582 C A RSF1 Missense_Mutation p.D889Y 0.40 deleterious(0.01) benign(0.285) TCGA-DD-AACF-01 12 110465512 110465512 G T ANKRD13A Missense_Mutation p.D296Y 0.47 deleterious(0.02) probably_damaging(0.994) TCGA-DD-AACF-01 12 110812008 110812008 C T ANAPC7 Missense_Mutation p.G581S 0.50 tolerated(0.07) probably_damaging(0.998) TCGA-DD-AACF-01 12 124839467 124839467 G A NCOR2 Missense_Mutation p.H1134Y 0.34 probably_damaging(0.924) TCGA-DD-AACF-01 12 132589368 132589386 AGCAGCAGGTGCTGCAGGG - EP400NL Frame_Shift_Del p.Q136Rfs*29 0.32 TCGA-DD-AACF-01 12 49426793 49426793 G A KMT2D Nonsense_Mutation p.Q3899* 0.42 TCGA-DD-AACF-01 12 55846338 55846338 C G OR6C2 Missense_Mutation p.A114G 0.42 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-DD-AACF-01 12 56346653 56346653 C G DGKA Missense_Mutation p.Q627E 0.43 tolerated(0.64) benign(0.348) TCGA-DD-AACF-01 12 6493827 6493827 T - LTBR Frame_Shift_Del p.I57Tfs*39 0.26 TCGA-DD-AACF-01 12 71976321 71976321 T G LGR5 Splice_Site p.X546_splice 0.53 TCGA-DD-AACF-01 12 72017292 72017292 T C ZFC3H1 Missense_Mutation p.H1531R 0.36 deleterious(0) probably_damaging(0.994) TCGA-DD-AACF-01 12 72017293 72017293 G A ZFC3H1 Missense_Mutation p.H1531Y 0.36 deleterious(0.01) probably_damaging(0.99) TCGA-DD-AACF-01 12 83289601 83289601 A C TMTC2 Missense_Mutation p.K220T 0.36 tolerated(0.06) possibly_damaging(0.751) TCGA-DD-AACF-01 13 25895210 25895210 A T NUPL1 Missense_Mutation p.K310N 0.40 tolerated(0.06) benign(0.295) TCGA-DD-AACF-01 13 58207758 58207758 G A PCDH17 Missense_Mutation p.A360T 0.74 tolerated(0.28) benign(0.042) TCGA-DD-AACF-01 13 60616914 60616914 A G DIAPH3 Missense_Mutation p.F179S 0.40 deleterious(0) probably_damaging(0.998) TCGA-DD-AACF-01 14 100792448 100792448 C T SLC25A47 Intron 0.43 TCGA-DD-AACF-01 14 20296045 20296045 G A OR4N2 Silent p.L146L 0.48 TCGA-DD-AACF-01 14 23355418 23355418 C T REM2 Silent p.R235R 0.05 TCGA-DD-AACF-01 14 23459032 23459032 A C C14orf93 Missense_Mutation p.S335A 0.46 tolerated_low_confidence(0.22) benign(0.009) TCGA-DD-AACF-01 14 24737796 24737796 G A RABGGTA Silent p.N310N 0.49 TCGA-DD-AACF-01 15 101718463 101718463 C G CHSY1 Missense_Mutation p.K513N 0.58 tolerated(0.55) benign(0.197) TCGA-DD-AACF-01 15 23006742 23006743 TT - NIPA2 Frame_Shift_Del p.I188Rfs*46 0.41 TCGA-DD-AACF-01 15 51768790 51768790 C - DMXL2 Frame_Shift_Del p.W2320Cfs*4 0.24 TCGA-DD-AACF-01 15 54306076 54306076 G A UNC13C Missense_Mutation p.V326M 0.50 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DD-AACF-01 15 65559101 65559101 T A PARP16 Missense_Mutation p.E106D 0.39 tolerated(0.26) benign(0.008) TCGA-DD-AACF-01 15 66015255 66015255 T C DENND4A Missense_Mutation p.I507V 0.31 tolerated(0.5) benign(0.001) TCGA-DD-AACF-01 15 75660501 75660501 C A MAN2C1 Missense_Mutation p.S47I 0.49 tolerated(0.39) benign(0.037) TCGA-DD-AACF-01 16 29859235 29859235 G T MVP Silent p.G869G 0.38 TCGA-DD-AACF-01 16 4702768 4702768 G A MGRN1 Missense_Mutation p.R129H 0.37 deleterious(0) probably_damaging(1) TCGA-DD-AACF-01 16 72058105 72058105 C T DHODH 3'UTR 0.74 TCGA-DD-AACF-01 16 88713512 88713512 C T CYBA Missense_Mutation p.R67H 0.62 deleterious(0) probably_damaging(0.997) TCGA-DD-AACF-01 17 10350423 10350423 G T MYH4 Silent p.L1692L 0.41 TCGA-DD-AACF-01 17 10363541 10363541 G T MYH4 Silent p.T415T 0.40 TCGA-DD-AACF-01 17 3417211 3417211 C T TRPV3 Silent p.%3D 0.80 TCGA-DD-AACF-01 17 4111281 4111281 T C ANKFY1 Missense_Mutation p.K269E 0.69 deleterious(0.01) benign(0.138) TCGA-DD-AACF-01 17 43003378 43003378 G T KIF18B 3'UTR 0.50 TCGA-DD-AACF-01 17 48194991 48194991 C A SAMD14 Silent p.P93P 0.39 TCGA-DD-AACF-01 17 7578477 7578504 GGGTGTGGAATCAACCCACAGCTGCACA - TP53 Frame_Shift_Del p.V143Rfs*18 0.71 TCGA-DD-AACF-01 17 76989549 76989549 G T CANT1 3'UTR 0.29 TCGA-DD-AACF-01 18 3499060 3499060 G T DLGAP1 3'UTR 0.55 TCGA-DD-AACF-01 18 743374 743375 GA - YES1 Frame_Shift_Del p.P256Nfs*26 0.39 TCGA-DD-AACF-01 18 9914062 9914062 G C VAPA 5'UTR 0.43 TCGA-DD-AACF-01 19 12865364 12865364 A G BEST2 Splice_Site p.X83_splice 0.45 TCGA-DD-AACF-01 19 17738725 17738725 G T UNC13A Missense_Mutation p.Q1260K 0.38 deleterious(0) possibly_damaging(0.53) TCGA-DD-AACF-01 19 17883504 17883504 A G FCHO1 Silent p.L248L 0.34 TCGA-DD-AACF-01 19 37853376 37853376 C G HKR1 Missense_Mutation p.L227V 0.34 tolerated(0.5) benign(0.01) TCGA-DD-AACF-01 19 37853629 37853629 C T HKR1 Missense_Mutation p.T311M 0.42 tolerated(0.2) possibly_damaging(0.806) TCGA-DD-AACF-01 19 39371780 39371780 C T SIRT2 Missense_Mutation p.G236D 0.13 deleterious(0) probably_damaging(0.987) TCGA-DD-AACF-01 19 42910418 42910418 G C LIPE Missense_Mutation p.P754A 0.39 tolerated(0.2) probably_damaging(1) TCGA-DD-AACF-01 19 46832584 46832584 C A HIF3A Silent p.R521R 0.36 TCGA-DD-AACF-01 19 49464086 49464086 C T BAX Missense_Mutation p.P130L 0.36 tolerated(0.55) possibly_damaging(0.698) TCGA-DD-AACF-01 19 51412004 51412004 G T KLK4 Silent p.S102S 0.36 TCGA-DD-AACF-01 19 7051735 7051735 T C MBD3L2 3'UTR 0.19 TCGA-DD-AACF-01 19 8196466 8196466 G A FBN3 Silent p.P654P 0.30 TCGA-DD-AACF-01 19 9083169 9083169 A T MUC16 Silent p.T2882T 0.45 TCGA-DD-AACF-01 1 110280775 110280775 T C GSTM3 Missense_Mutation p.I104V 0.35 tolerated(0.07) benign(0) TCGA-DD-AACF-01 1 145609187 145609187 T C POLR3C Intron 0.21 TCGA-DD-AACF-01 1 152086518 152086518 T C TCHH Silent p.E13E 0.39 TCGA-DD-AACF-01 1 153963600 153963600 G A RPS27 Missense_Mutation p.D6N 0.14 deleterious(0.03) benign(0.063) TCGA-DD-AACF-01 1 154316450 154316450 C T ATP8B2 Nonsense_Mutation p.R647* 0.03 TCGA-DD-AACF-01 1 155230399 155230399 C A SCAMP3 Missense_Mutation p.A66S 0.51 tolerated(0.37) benign(0.211) TCGA-DD-AACF-01 1 158435624 158435624 C A OR10K1 Silent p.T91T 0.03 TCGA-DD-AACF-01 1 16946447 16946447 G A RP5-1182A14.5 3'Flank 0.14 TCGA-DD-AACF-01 1 180013265 180013265 G T CEP350 Missense_Mutation p.D1527Y 0.41 possibly_damaging(0.886) TCGA-DD-AACF-01 1 203452997 203452997 G A PRELP Missense_Mutation p.A229T 0.24 deleterious(0) probably_damaging(1) TCGA-DD-AACF-01 1 206760360 206760360 T A RASSF5 3'UTR 0.26 TCGA-DD-AACF-01 1 207644091 207644091 A G CR2 Missense_Mutation p.Q411R 0.21 deleterious(0.02) probably_damaging(0.936) TCGA-DD-AACF-01 1 211487193 211487193 A G RCOR3 3'UTR 0.19 TCGA-DD-AACF-01 1 21599275 21599275 T C ECE1 Missense_Mutation p.N137S 0.35 deleterious(0.02) probably_damaging(0.981) TCGA-DD-AACF-01 1 217688227 217688227 G A GPATCH2 Missense_Mutation p.P368L 0.24 deleterious(0.04) benign(0.007) TCGA-DD-AACF-01 1 232596822 232596822 C T SIPA1L2 Missense_Mutation p.G969E 0.45 deleterious(0) probably_damaging(1) TCGA-DD-AACF-01 1 240656420 240656420 G A GREM2 Missense_Mutation p.S119F 0.20 deleterious(0.05) probably_damaging(0.945) TCGA-DD-AACF-01 1 39881969 39881969 A G KIAA0754 3'UTR 0.42 TCGA-DD-AACF-01 1 55085632 55085636 AGGTA - FAM151A Frame_Shift_Del p.Y55Afs*40 0.31 TCGA-DD-AACF-01 1 86960069 86960069 C A CLCA1 Missense_Mutation p.T627K 0.46 deleterious(0.01) probably_damaging(0.979) TCGA-DD-AACF-01 1 94343382 94343382 T C DNTTIP2 Missense_Mutation p.S37G 0.39 tolerated(0.45) benign(0.003) TCGA-DD-AACF-01 20 23335285 23335285 A G NXT1 3'UTR 0.49 TCGA-DD-AACF-01 20 2775922 2775922 C T CPXM1 Splice_Site p.X620_splice 0.45 TCGA-DD-AACF-01 20 46264396 46264396 G T NCOA3 Missense_Mutation p.M481I 0.41 deleterious(0.01) possibly_damaging(0.54) TCGA-DD-AACF-01 20 60898879 60898879 G A LAMA5 Silent p.R1934R 0.42 TCGA-DD-AACF-01 20 61917505 61917505 C T ARFGAP1 Intron 0.40 TCGA-DD-AACF-01 20 62366733 62366733 A C ZGPAT Missense_Mutation p.Q425P 0.39 deleterious(0.04) benign(0.006) TCGA-DD-AACF-01 20 62366751 62366751 A G ZGPAT Missense_Mutation p.E431G 0.39 tolerated(0.1) benign(0.15) TCGA-DD-AACF-01 21 47783767 47783767 C T PCNT Missense_Mutation p.P843S 0.42 benign(0.036) TCGA-DD-AACF-01 22 18371957 18371957 A T MICAL3 Missense_Mutation p.N578K 0.43 probably_damaging(1) TCGA-DD-AACF-01 22 29439309 29439309 C A ZNRF3 Missense_Mutation p.P175Q 0.35 deleterious(0.01) probably_damaging(0.992) TCGA-DD-AACF-01 2 108477326 108477326 C A RGPD4 Missense_Mutation p.N621K 0.36 tolerated(0.82) benign(0.002) TCGA-DD-AACF-01 2 119735485 119735485 G C MARCO Missense_Mutation p.G247A 0.38 deleterious(0.01) probably_damaging(0.995) TCGA-DD-AACF-01 2 132249449 132249449 C A MZT2A Missense_Mutation p.G107W 0.31 deleterious(0) probably_damaging(0.999) TCGA-DD-AACF-01 2 141819790 141819790 T A LRP1B Missense_Mutation p.M356L 0.36 benign(0.02) TCGA-DD-AACF-01 2 179477198 179477198 T C TTN Missense_Mutation p.N16685S 0.42 TCGA-DD-AACF-01 2 190428726 190428726 G T SLC40A1 Missense_Mutation p.T329K 0.43 deleterious(0) possibly_damaging(0.906) TCGA-DD-AACF-01 2 204078361 204078361 T C NBEAL1 Silent p.V2656V 0.47 TCGA-DD-AACF-01 2 210888866 210888866 A C KANSL1L Missense_Mutation p.F875C 0.43 tolerated_low_confidence(0.15) possibly_damaging(0.749) TCGA-DD-AACF-01 2 219268052 219268052 A T CTDSP1 Missense_Mutation p.K190M 0.45 deleterious(0) probably_damaging(1) TCGA-DD-AACF-01 2 25190147 25190147 G A DNAJC27 Nonsense_Mutation p.R35* 0.42 TCGA-DD-AACF-01 2 27309070 27309070 G A EMILIN1 3'UTR 0.19 TCGA-DD-AACF-01 2 27360538 27360538 C A C2orf53 Silent p.G220G 0.44 TCGA-DD-AACF-01 2 32695253 32695253 C G BIRC6 Missense_Mutation p.S2122C 0.44 probably_damaging(0.993) TCGA-DD-AACF-01 2 55201875 55201875 G A RTN4 Missense_Mutation p.T1129I 0.43 deleterious(0) probably_damaging(1) TCGA-DD-AACF-01 2 71060902 71060902 A G CD207 Missense_Mutation p.V147A 0.37 tolerated(0.19) benign(0.037) TCGA-DD-AACF-01 2 74729750 74729750 C T LBX2 Intron 0.49 TCGA-DD-AACF-01 2 84832694 84832694 T G DNAH6 Missense_Mutation p.L1051R 0.41 deleterious(0) probably_damaging(0.998) TCGA-DD-AACF-01 2 85828182 85828182 G C TMEM150A Silent p.P54P 0.38 TCGA-DD-AACF-01 3 100387946 100387946 A G GPR128 Silent p.T711T 0.36 TCGA-DD-AACF-01 3 129288753 129288753 C T PLXND1 Silent p.G1266G 0.21 TCGA-DD-AACF-01 3 142188365 142188365 T C ATR Missense_Mutation p.I2122M 0.44 tolerated(0.15) probably_damaging(0.981) TCGA-DD-AACF-01 3 150932059 150932059 G T P2RY14 Missense_Mutation p.Q16K 0.30 tolerated(0.07) benign(0.001) TCGA-DD-AACF-01 3 172499968 172499968 C G ECT2 Missense_Mutation p.L522V 0.04 tolerated(0.11) possibly_damaging(0.718) TCGA-DD-AACF-01 3 180379687 180379687 C T CCDC39 Missense_Mutation p.E107K 0.38 tolerated(0.07) benign(0.2) TCGA-DD-AACF-01 3 182897166 182897166 G C MCF2L2 3'UTR 0.32 TCGA-DD-AACF-01 3 184429554 184429554 T C MAGEF1 Missense_Mutation p.K19R 0.46 tolerated(0.97) benign(0.026) TCGA-DD-AACF-01 3 195506646 195506646 G T MUC4 Silent p.T3935T 0.04 TCGA-DD-AACF-01 3 44869717 44869717 A G KIF15 Silent p.V956V 0.51 TCGA-DD-AACF-01 3 45077425 45077425 G T CLEC3B 3'UTR 0.44 TCGA-DD-AACF-01 3 45077426 45077426 C T CLEC3B 3'UTR 0.44 TCGA-DD-AACF-01 3 48614152 48614152 T A COL7A1 Missense_Mutation p.Q1886L 0.40 unknown(0) TCGA-DD-AACF-01 3 48683636 48683636 G A CELSR3 Silent p.H2450H 0.44 TCGA-DD-AACF-01 3 52728763 52728781 GCTACCGATAGGCATTGAA - GLT8D1 3'UTR 0.28 TCGA-DD-AACF-01 3 66434613 66434613 G A LRIG1 Missense_Mutation p.H625Y 0.47 deleterious(0) possibly_damaging(0.703) TCGA-DD-AACF-01 3 68934375 68934375 A T FAM19A4 5'UTR 0.45 TCGA-DD-AACF-01 4 141334243 141334243 T A CLGN Splice_Site 0.41 TCGA-DD-AACF-01 4 143067061 143067061 C G INPP4B Missense_Mutation p.G551A 0.75 tolerated(0.6) benign(0.036) TCGA-DD-AACF-01 4 55156601 55156601 A T PDGFRA Missense_Mutation p.K1001M 0.64 deleterious(0.02) probably_damaging(0.999) TCGA-DD-AACF-01 4 55156602 55156602 G T PDGFRA Missense_Mutation p.K1001N 0.66 tolerated(0.19) probably_damaging(0.999) TCGA-DD-AACF-01 4 629748 629748 G T PDE6B Missense_Mutation p.R234L 0.09 deleterious(0) probably_damaging(0.922) TCGA-DD-AACF-01 5 131819600 131819600 G A IRF1 3'UTR 0.34 TCGA-DD-AACF-01 5 139828827 139828827 A T ANKHD1 Missense_Mutation p.E393D 0.28 unknown(0) TCGA-DD-AACF-01 5 140308283 140308283 G A PCDHAC1 Silent p.R602R 0.28 TCGA-DD-AACF-01 5 151784217 151784217 C T NMUR2 Missense_Mutation p.R153H 0.23 tolerated(0.09) probably_damaging(0.953) TCGA-DD-AACF-01 5 161112735 161112735 G A GABRA6 5'UTR 0.41 TCGA-DD-AACF-01 5 16766245 16766245 G T MYO10 Missense_Mutation p.Q375K 0.29 deleterious(0.05) probably_damaging(0.981) TCGA-DD-AACF-01 5 16766246 16766246 G T MYO10 Silent p.T374T 0.29 TCGA-DD-AACF-01 5 175665522 175665522 T A SIMC1 Missense_Mutation p.F4Y 0.09 tolerated_low_confidence(0.41) benign(0.294) TCGA-DD-AACF-01 5 176733251 176733251 A G MXD3 3'Flank 0.33 TCGA-DD-AACF-01 5 40764913 40764913 G C PRKAA1 Missense_Mutation p.P432A 0.60 deleterious(0.03) benign(0.159) TCGA-DD-AACF-01 6 106992501 106992501 G A AIM1 Missense_Mutation p.G1291R 0.41 deleterious(0) probably_damaging(1) TCGA-DD-AACF-01 6 118228786 118228786 C T SLC35F1 5'UTR 0.56 TCGA-DD-AACF-01 6 136599264 136599264 T G BCLAF1 Missense_Mutation p.H252P 0.18 deleterious(0.04) benign(0.418) TCGA-DD-AACF-01 6 34003690 34003690 G A GRM4 Missense_Mutation p.R733W 0.34 deleterious(0) probably_damaging(0.992) TCGA-DD-AACF-01 6 96659892 96659892 C T FUT9 3'UTR 0.44 TCGA-DD-AACF-01 6 97613250 97613250 A C MMS22L Missense_Mutation p.I1031M 0.52 deleterious(0.04) possibly_damaging(0.604) TCGA-DD-AACF-01 7 100681743 100681743 T C MUC17 Missense_Mutation p.M2349T 0.60 unknown(0) TCGA-DD-AACF-01 7 107577640 107577684 CTGTGCTGTTGCTTTGGGAAGTTGTGTCAGATAATTTCACTTCTA - LAMB1 In_Frame_Del p.V1267_T1281del 0.13 TCGA-DD-AACF-01 7 112724864 112724864 T C GPR85 5'UTR 0.34 TCGA-DD-AACF-01 7 122056186 122056186 G T CADPS2 Missense_Mutation p.L837M 0.23 deleterious(0.04) probably_damaging(0.995) TCGA-DD-AACF-01 7 127250877 127250877 T A PAX4 3'UTR 0.28 TCGA-DD-AACF-01 7 149171588 149171588 G A ZNF746 Missense_Mutation p.P609S 0.41 deleterious_low_confidence(0.03) probably_damaging(0.986) TCGA-DD-AACF-01 7 42948996 42948996 T C C7orf25 3'Flank 0.53 TCGA-DD-AACF-01 7 4839835 4839835 G T RADIL Silent p.P983P 0.29 TCGA-DD-AACF-01 7 90043557 90043557 C G CLDN12 3'UTR 0.24 TCGA-DD-AACF-01 7 91865731 91865731 C - KRIT1 Frame_Shift_Del p.D161Ifs*4 0.24 TCGA-DD-AACF-01 7 94024181 94024181 A T COL1A2 5'UTR 0.45 TCGA-DD-AACF-01 7 99055817 99055817 G A ATP5J2 3'Flank 0.22 TCGA-DD-AACF-01 8 100128060 100128060 G T VPS13B Missense_Mutation p.D299Y 0.30 deleterious(0) benign(0.026) TCGA-DD-AACF-01 8 146278796 146278796 G A C8orf33 Missense_Mutation p.E173K 0.14 deleterious(0) probably_damaging(0.933) TCGA-DD-AACF-01 8 27593492 27593492 G A CCDC25 3'UTR 0.35 TCGA-DD-AACF-01 8 54669202 54669202 A C ATP6V1H Missense_Mutation p.L397R 0.48 deleterious(0) probably_damaging(1) TCGA-DD-AACF-01 8 63161677 63161677 G T NKAIN3 Silent p.A15A 0.44 TCGA-DD-AACF-01 8 95879510 95879510 A G INTS8 Missense_Mutation p.I787V 0.64 tolerated(0.11) benign(0.111) TCGA-DD-AACF-01 9 125288746 125288746 T G OR1N1 Missense_Mutation p.Y276S 0.42 deleterious(0) probably_damaging(0.999) TCGA-DD-AACF-01 9 130630625 130630625 T C AK1 Missense_Mutation p.Y164C 0.58 deleterious(0) probably_damaging(1) TCGA-DD-AACF-01 9 133993147 133993147 G T AIF1L Silent p.L95L 0.44 TCGA-DD-AACF-01 9 134073951 134073951 T G NUP214 Silent p.T1690T 0.50 TCGA-DD-AACF-01 9 138825357 138825357 A - UBAC1 Frame_Shift_Del p.F369Lfs*9 0.30 TCGA-DD-AACF-01 9 21239511 21239511 C A IFNA14 Missense_Mutation p.A142S 0.11 deleterious(0) possibly_damaging(0.837) TCGA-DD-AACF-01 9 21239512 21239512 C G IFNA14 Silent p.L141L 0.10 TCGA-DD-AACF-01 9 79121334 79121334 C A GCNT1 3'UTR 0.38 TCGA-DD-AACF-01 9 84606650 84606650 G T SPATA31D1 Missense_Mutation p.R422M 0.42 deleterious(0) probably_damaging(0.993) TCGA-DD-AACF-01 X 104984606 104984606 G T IL1RAPL2 Missense_Mutation p.A324S 0.48 tolerated(0.48) benign(0.062) TCGA-DD-AACF-01 X 129270145 129270145 T C AIFM1 Missense_Mutation p.I394V 0.90 tolerated(1) benign(0.021) TCGA-DD-AACF-01 X 46433907 46433907 G A CHST7 Missense_Mutation p.A181T 0.51 deleterious_low_confidence(0.03) benign(0.119) TCGA-DD-AACF-01 X 70468643 70468643 G C ZMYM3 Missense_Mutation p.R544G 0.18 tolerated(0.38) benign(0.402) TCGA-DD-AACG-01 10 104140434 104140434 G C GBF1 Missense_Mutation p.V1721L 0.63 tolerated(0.19) benign(0.11) TCGA-DD-AACG-01 10 104465227 104465227 C T ARL3 Missense_Mutation p.R8H 0.50 deleterious(0) probably_damaging(0.962) TCGA-DD-AACG-01 10 124336218 124336218 A G DMBT1 Missense_Mutation p.D196G 0.23 deleterious(0) probably_damaging(0.999) TCGA-DD-AACG-01 10 129913465 129913465 C G MKI67 Missense_Mutation p.A403P 0.28 tolerated(0.06) possibly_damaging(0.731) TCGA-DD-AACG-01 10 135352460 135352460 C T CYP2E1 Missense_Mutation p.R492C 0.42 deleterious(0) probably_damaging(1) TCGA-DD-AACG-01 10 79397504 79397504 C T KCNMA1 5'Flank 0.41 TCGA-DD-AACG-01 11 117251354 117251359 GACAAG - CEP164 In_Frame_Del p.K449_D450del 0.33 TCGA-DD-AACG-01 11 119243744 119243744 A G USP2 Silent p.D149D 0.37 TCGA-DD-AACG-01 11 35208383 35208383 A T CD44 Silent p.P124P 0.37 TCGA-DD-AACG-01 11 47591365 47591365 G - PTPMT1 Frame_Shift_Del p.L124Wfs*24 0.23 TCGA-DD-AACG-01 11 5254217 5254217 C A HBD Missense_Mutation p.A141S 0.20 tolerated(0.07) probably_damaging(0.96) TCGA-DD-AACG-01 11 58723497 58723497 T G GLYATL1 Missense_Mutation p.F333L 0.45 tolerated_low_confidence(0.47) benign(0.007) TCGA-DD-AACG-01 11 60157018 60157018 T C MS4A7 Silent p.Y165Y 0.33 TCGA-DD-AACG-01 11 67209158 67209158 A T CORO1B Intron 0.41 TCGA-DD-AACG-01 11 88781134 88781134 T C GRM5 5'UTR 0.61 TCGA-DD-AACG-01 11 94603926 94603926 T C AMOTL1 Missense_Mutation p.F946S 0.39 deleterious_low_confidence(0.01) benign(0.386) TCGA-DD-AACG-01 12 10205329 10205329 C G CLEC9A Missense_Mutation p.P15A 0.49 deleterious(0.01) possibly_damaging(0.749) TCGA-DD-AACG-01 12 120220408 120220408 C T CIT Missense_Mutation p.E527K 0.54 deleterious(0.01) possibly_damaging(0.771) TCGA-DD-AACG-01 12 32136720 32136720 A G KIAA1551 Missense_Mutation p.D944G 0.45 tolerated(0.11) probably_damaging(0.971) TCGA-DD-AACG-01 12 41900359 41900359 T C PDZRN4 Silent p.P315P 0.64 TCGA-DD-AACG-01 12 53687349 53687349 G T ESPL1 3'UTR 0.27 TCGA-DD-AACG-01 12 57594875 57594875 C T LRP1 Silent p.P3428P 0.23 TCGA-DD-AACG-01 12 6182863 6182863 G A VWF Missense_Mutation p.P307S 0.43 tolerated(0.19) probably_damaging(0.991) TCGA-DD-AACG-01 13 101289831 101289831 C A TMTC4 Silent p.V320V 0.37 TCGA-DD-AACG-01 13 36827982 36827982 C A CCDC169 Missense_Mutation p.K142N 0.35 deleterious(0) benign(0.152) TCGA-DD-AACG-01 14 45571737 45571737 T G PRPF39 Missense_Mutation p.F192C 0.54 deleterious(0) probably_damaging(0.967) TCGA-DD-AACG-01 14 45571769 45571769 T G PRPF39 Missense_Mutation p.F203V 0.39 deleterious(0) possibly_damaging(0.677) TCGA-DD-AACG-01 15 24922750 24922750 A T NPAP1 Missense_Mutation p.D579V 0.24 deleterious(0) probably_damaging(0.998) TCGA-DD-AACG-01 15 31330001 31330001 G A TRPM1 Silent p.N845N 0.48 TCGA-DD-AACG-01 15 45388244 45388244 G T DUOX2 Missense_Mutation p.Q1288K 0.21 tolerated(0.38) benign(0.11) TCGA-DD-AACG-01 15 66599227 66599227 A G DIS3L Missense_Mutation p.E120G 0.32 deleterious(0) probably_damaging(0.991) TCGA-DD-AACG-01 15 74426696 74426696 C T ISLR2 Missense_Mutation p.P534L 0.68 tolerated(0.35) probably_damaging(0.997) TCGA-DD-AACG-01 15 85327987 85327987 C T ZNF592 Missense_Mutation p.P694L 0.42 tolerated(0.84) benign(0.001) TCGA-DD-AACG-01 15 85681148 85681148 C T PDE8A 3'UTR 0.53 TCGA-DD-AACG-01 15 98512602 98512602 C A ARRDC4 Missense_Mutation p.S292Y 0.52 deleterious(0.02) probably_damaging(0.968) TCGA-DD-AACG-01 16 89293317 89293317 C T ZNF778 Silent p.F179F 0.71 TCGA-DD-AACG-01 17 18881565 18881565 G T FAM83G Missense_Mutation p.P472T 0.50 tolerated(0.64) benign(0.037) TCGA-DD-AACG-01 17 38508601 38508601 C A RARA Missense_Mutation p.R217S 0.24 tolerated(0.18) possibly_damaging(0.766) TCGA-DD-AACG-01 17 39659035 39659035 G T KRT13 Silent p.T309T 0.37 TCGA-DD-AACG-01 17 39659036 39659036 G T KRT13 Missense_Mutation p.T309N 0.38 tolerated(0.06) possibly_damaging(0.755) TCGA-DD-AACG-01 17 70117638 70117638 C T SOX9 Missense_Mutation p.P36S 0.40 tolerated(0.16) possibly_damaging(0.836) TCGA-DD-AACG-01 17 7578275 7578275 G A TP53 Nonsense_Mutation p.Q192* 0.74 TCGA-DD-AACG-01 17 77808306 77808306 G A CBX4 Missense_Mutation p.P379S 0.33 tolerated(1) benign(0.018) TCGA-DD-AACG-01 17 78965664 78965664 G C CHMP6 5'UTR 0.19 TCGA-DD-AACG-01 18 76755362 76755362 C A SALL3 Nonsense_Mutation p.S1124* 0.32 TCGA-DD-AACG-01 19 16682902 16682902 C A SLC35E1 Nonsense_Mutation p.G92* 0.71 TCGA-DD-AACG-01 19 22154761 22154761 T C ZNF208 Silent p.G1025G 0.14 TCGA-DD-AACG-01 19 46268971 46268971 C A SIX5 Nonsense_Mutation p.E670* 0.71 TCGA-DD-AACG-01 19 46268972 46268972 C A SIX5 Silent p.L669L 0.71 TCGA-DD-AACG-01 19 50779462 50779462 T A MYH14 Splice_Site p.X1227_splice 0.09 TCGA-DD-AACG-01 19 55284986 55284986 C T KIR2DL1 Missense_Mutation p.T91M 0.20 tolerated(0.07) benign(0.024) TCGA-DD-AACG-01 19 9271261 9271281 GCTTACGGCCGGAGCTGCCAC - ZNF317 In_Frame_Del p.A314_H320del 0.81 TCGA-DD-AACG-01 1 155238148 155238148 C A CLK2 Nonsense_Mutation p.E163* 0.15 TCGA-DD-AACG-01 1 156498714 156498714 T C IQGAP3 Missense_Mutation p.D1522G 0.61 tolerated(0.2) benign(0.001) TCGA-DD-AACG-01 1 173806173 173806173 C T DARS2 Silent p.G253G 0.20 TCGA-DD-AACG-01 1 190250737 190250737 A T BRINP3 Missense_Mutation p.L127H 0.64 deleterious(0) probably_damaging(1) TCGA-DD-AACG-01 1 202549854 202549864 CTTTCAATGCC TT PPP1R12B 3'UTR 0.50 TCGA-DD-AACG-01 1 20517360 20517360 A G UBXN10 Silent p.Q102Q 0.17 TCGA-DD-AACG-01 1 240071289 240071289 C G CHRM3 Missense_Mutation p.R180G 0.19 deleterious(0) probably_damaging(1) TCGA-DD-AACG-01 1 248512076 248512076 G T OR14C36 5'Flank 0.63 TCGA-DD-AACG-01 1 27023218 27023222 CCCTA - ARID1A Frame_Shift_Del p.P109Afs*6 0.56 TCGA-DD-AACG-01 1 2938945 2938945 C T ACTRT2 Missense_Mutation p.S232F 0.17 tolerated(0.07) benign(0.191) TCGA-DD-AACG-01 1 31191827 31191827 A G MATN1 Intron 0.23 TCGA-DD-AACG-01 1 53504627 53504637 TGCCTTCAAGG - SCP2 Frame_Shift_Del p.A460Efs*7 0.13 TCGA-DD-AACG-01 1 91726556 91726573 ATTAATAGCCAAATAATT - HFM1 3'UTR 0.23 TCGA-DD-AACG-01 1 93309540 93309540 T A FAM69A Missense_Mutation p.E229D 0.22 deleterious(0.03) benign(0.077) TCGA-DD-AACG-01 20 13912332 13912332 A G SEL1L2 Missense_Mutation p.L67P 0.47 tolerated(0.35) benign(0.001) TCGA-DD-AACG-01 20 50781292 50781292 G A ZFP64 Silent p.C151C 0.35 TCGA-DD-AACG-01 20 61443981 61443981 G T OGFR Silent p.G338G 0.36 TCGA-DD-AACG-01 21 40568678 40568678 T C BRWD1 Missense_Mutation p.K2106R 0.24 tolerated_low_confidence(0.38) probably_damaging(0.98) TCGA-DD-AACG-01 21 43955639 43955639 A G SLC37A1 Missense_Mutation p.Y110C 0.42 deleterious(0) probably_damaging(1) TCGA-DD-AACG-01 22 21989329 21989329 G C CCDC116 Missense_Mutation p.G326A 0.52 tolerated(0.23) benign(0.094) TCGA-DD-AACG-01 22 33733771 33733771 G C LARGE Missense_Mutation p.S383C 0.42 deleterious(0) probably_damaging(0.974) TCGA-DD-AACG-01 22 42180662 42180662 G A MEI1 Missense_Mutation p.A1074T 0.55 tolerated(0.15) benign(0.004) TCGA-DD-AACG-01 22 45132994 45132994 C T PRR5 Missense_Mutation p.P368L 0.47 tolerated_low_confidence(0.07) probably_damaging(0.998) TCGA-DD-AACG-01 2 122484919 122484919 T C NIFK 3'UTR 0.63 TCGA-DD-AACG-01 2 136481727 136481727 C G R3HDM1 Silent p.V1055V 0.23 TCGA-DD-AACG-01 2 136691481 136691481 T A DARS Missense_Mutation p.E168V 0.61 tolerated(0.06) benign(0.094) TCGA-DD-AACG-01 2 165559721 165559721 T C COBLL1 Missense_Mutation p.H412R 0.21 tolerated(0.35) benign(0) TCGA-DD-AACG-01 2 172182584 172182584 C T METTL8 Missense_Mutation p.R312K 0.62 deleterious(0.02) probably_damaging(0.996) TCGA-DD-AACG-01 2 210885145 210885145 A T RPE 3'UTR 0.33 TCGA-DD-AACG-01 2 21229519 21229519 C A APOB Missense_Mutation p.E3407D 0.61 benign(0.059) TCGA-DD-AACG-01 2 222347314 222347314 T C EPHA4 Missense_Mutation p.D359G 0.15 deleterious(0) probably_damaging(0.989) TCGA-DD-AACG-01 2 232123721 232123721 C T ARMC9 Missense_Mutation p.P311L 0.65 deleterious(0) possibly_damaging(0.816) TCGA-DD-AACG-01 2 29366802 29366802 A T CLIP4 Silent p.A292A 0.60 TCGA-DD-AACG-01 2 39053721 39053721 T A DHX57 Missense_Mutation p.E917V 0.53 deleterious(0) probably_damaging(1) TCGA-DD-AACG-01 2 98994559 98994559 T G CNGA3 Intron 0.15 TCGA-DD-AACG-01 3 10970945 10970945 C T SLC6A11 Missense_Mutation p.R431W 0.34 deleterious(0) probably_damaging(1) TCGA-DD-AACG-01 3 113212129 113212129 G T SPICE1 Missense_Mutation p.S139Y 0.43 deleterious(0) probably_damaging(0.922) TCGA-DD-AACG-01 3 129282004 129282004 G C PLXND1 Missense_Mutation p.T1534R 0.45 deleterious(0) probably_damaging(1) TCGA-DD-AACG-01 3 132086623 132086623 G C ACPP Missense_Mutation p.R405P 0.10 deleterious(0.02) probably_damaging(0.96) TCGA-DD-AACG-01 3 15507879 15507879 G T COLQ Silent p.G261G 0.17 TCGA-DD-AACG-01 3 25686805 25686805 C G TOP2B Missense_Mutation p.E71Q 0.35 deleterious(0.01) possibly_damaging(0.676) TCGA-DD-AACG-01 3 25686847 25686847 C T TOP2B Missense_Mutation p.E57K 0.35 deleterious(0) probably_damaging(0.92) TCGA-DD-AACG-01 3 38904741 38904741 T A SCN11A Missense_Mutation p.N1334I 0.44 deleterious(0) probably_damaging(0.919) TCGA-DD-AACG-01 3 44763599 44763599 T A ZNF502 Silent p.T430T 0.39 TCGA-DD-AACG-01 3 47165225 47165225 T A SETD2 Missense_Mutation p.S301C 0.39 tolerated_low_confidence(0.13) benign(0.001) TCGA-DD-AACG-01 3 64526830 64526830 G T ADAMTS9 Missense_Mutation p.A1821D 0.42 deleterious(0.01) possibly_damaging(0.449) TCGA-DD-AACG-01 4 10446373 10446373 A T ZNF518B Nonsense_Mutation p.L527* 0.36 TCGA-DD-AACG-01 4 114375558 114375558 T C CAMK2D 3'UTR 0.81 TCGA-DD-AACG-01 4 119979383 119979383 C A SYNPO2 3'UTR 0.82 TCGA-DD-AACG-01 4 144796663 144796663 C A GYPE Intron 0.32 TCGA-DD-AACG-01 4 40154482 40154482 C G N4BP2 Missense_Mutation p.I1742M 0.24 deleterious(0) probably_damaging(1) TCGA-DD-AACG-01 4 40818098 40818098 T G APBB2 3'UTR 0.18 TCGA-DD-AACG-01 4 515466 515466 G A PIGG Silent p.L450L 0.06 TCGA-DD-AACG-01 5 122754208 122754208 A C CEP120 Silent p.G17G 0.20 TCGA-DD-AACG-01 5 149247346 149247346 G T PDE6A Missense_Mutation p.A739D 0.22 deleterious(0) probably_damaging(0.998) TCGA-DD-AACG-01 5 15937316 15937316 G A FBXL7 3'UTR 0.75 TCGA-DD-AACG-01 5 23526821 23526821 C A PRDM9 Missense_Mutation p.H542N 0.26 tolerated(0.15) probably_damaging(0.994) TCGA-DD-AACG-01 5 41382470 41382470 A T PLCXD3 Silent p.A90A 0.59 TCGA-DD-AACG-01 5 43446574 43446574 T C C5orf28 Missense_Mutation p.H133R 0.62 tolerated(0.24) benign(0.003) TCGA-DD-AACG-01 5 54274853 54274853 T A ESM1 3'UTR 0.31 TCGA-DD-AACG-01 6 100896528 100896528 C A SIM1 Missense_Mutation p.K190N 0.26 deleterious(0) probably_damaging(0.981) TCGA-DD-AACG-01 6 128403764 128403764 C A PTPRK Missense_Mutation p.R532I 0.21 tolerated(0.06) possibly_damaging(0.466) TCGA-DD-AACG-01 6 145947127 145947127 C T EPM2A 3'UTR 0.56 TCGA-DD-AACG-01 6 151161379 151161380 AA - PLEKHG1 Frame_Shift_Del p.K1169Rfs*5 0.22 TCGA-DD-AACG-01 6 30951677 30951677 T C MUC21 5'UTR 0.22 TCGA-DD-AACG-01 6 31507007 31507007 G C DDX39B Missense_Mutation p.L86V 0.49 tolerated(0.15) benign(0.14) TCGA-DD-AACG-01 6 31555456 31555456 C T LST1 Silent p.L20L 0.28 TCGA-DD-AACG-01 6 33135050 33135051 - G COL11A2 Frame_Shift_Ins p.G1304Rfs*35 0.27 TCGA-DD-AACG-01 6 37139141 37139141 T A PIM1 Missense_Mutation p.C161S 0.39 tolerated(0.25) benign(0.131) TCGA-DD-AACG-01 6 43492327 43492327 T A XPO5 Missense_Mutation p.E1120V 0.41 deleterious(0) benign(0.153) TCGA-DD-AACG-01 6 50803905 50803905 A G TFAP2B Missense_Mutation p.K245E 0.42 deleterious(0.01) possibly_damaging(0.794) TCGA-DD-AACG-01 6 84870613 84870613 G T KIAA1009 Missense_Mutation p.S900Y 0.06 deleterious(0) possibly_damaging(0.691) TCGA-DD-AACG-01 7 107732077 107732077 C T LAMB4 Silent p.A565A 0.22 TCGA-DD-AACG-01 7 129962512 129962512 A T CPA4 Missense_Mutation p.Y421F 0.40 deleterious(0.01) probably_damaging(0.915) TCGA-DD-AACG-01 7 137567230 137567230 T A CREB3L2 Missense_Mutation p.D472V 0.41 tolerated(0.06) benign(0.125) TCGA-DD-AACG-01 7 139168233 139168233 C G KLRG2 Silent p.G52G 0.16 TCGA-DD-AACG-01 7 148907790 148907790 A G ZNF282 Missense_Mutation p.I316V 0.46 tolerated(0.38) benign(0.005) TCGA-DD-AACG-01 7 29874406 29874406 C G WIPF3 Silent p.P22P 0.24 TCGA-DD-AACG-01 7 53104142 53104142 G A POM121L12 Missense_Mutation p.A260T 0.43 tolerated_low_confidence(0.53) probably_damaging(0.913) TCGA-DD-AACG-01 7 97614246 97614246 T C OCM2 3'UTR 0.39 TCGA-DD-AACG-01 8 144103352 144103352 C A LY6E 3'UTR 0.45 TCGA-DD-AACG-01 8 21965221 21965221 C T NUDT18 Missense_Mutation p.V188I 0.50 tolerated(0.35) benign(0.012) TCGA-DD-AACG-01 8 70536387 70536387 G A SULF1 Missense_Mutation p.S602N 0.28 tolerated(0.53) benign(0.002) TCGA-DD-AACG-01 8 72182014 72182014 G A EYA1 Silent p.H337H 0.23 TCGA-DD-AACG-01 9 100423350 100423375 GGTAAGTGGAATTCAGTATTTCTTAA - NCBP1 Splice_Site p.X534_splice 0.37 TCGA-DD-AACG-01 9 129148868 129148868 A G MVB12B Missense_Mutation p.M114V 0.30 tolerated(0.16) possibly_damaging(0.779) TCGA-DD-AACG-01 9 135985072 135985072 T C RALGDS Silent p.R175R 0.37 TCGA-DD-AACG-01 9 138660742 138660742 A G KCNT1 Missense_Mutation p.Q490R 0.39 deleterious(0) possibly_damaging(0.677) TCGA-DD-AACG-01 9 139390420 139390421 TG - NOTCH1 3'UTR 0.42 TCGA-DD-AACG-01 9 38068423 38068428 TGTCGT - SHB In_Frame_Del p.D72_S74delinsG 0.34 TCGA-DD-AACG-01 9 5921873 5921873 G A KIAA2026 Missense_Mutation p.H1375Y 0.84 deleterious(0.01) benign(0.044) TCGA-DD-AACG-01 X 140984732 140984732 C A MAGEC3 Silent p.P396P 0.88 TCGA-DD-AACG-01 X 140994996 140994996 G T MAGEC1 Silent p.G602G 0.38 TCGA-DD-AACG-01 X 146363544 146363544 A G MIR514A2 RNA 0.29 TCGA-DD-AACG-01 X 153688716 153688716 G A PLXNA3 Missense_Mutation p.A65T 0.42 tolerated(0.41) benign(0.05) TCGA-DD-AACG-01 X 47065414 47065414 A G UBA1 Missense_Mutation p.H548R 0.46 tolerated(0.23) benign(0.03) TCGA-DD-AACG-01 X 49370674 49370674 A G GAGE1 3'UTR 0.85 TCGA-DD-AACG-01 X 73963416 73963416 T C KIAA2022 Missense_Mutation p.T326A 0.86 deleterious(0.03) benign(0.106) TCGA-DD-AACH-01 10 112258097 112258097 C A DUSP5 Missense_Mutation p.A73E 0.82 tolerated(0.26) benign(0.12) TCGA-DD-AACH-01 10 25839939 25839939 G A GPR158 Missense_Mutation p.R480H 0.41 deleterious(0) possibly_damaging(0.71) TCGA-DD-AACH-01 10 70673827 70673827 A G DDX50 Missense_Mutation p.N319S 0.72 tolerated(0.06) benign(0.098) TCGA-DD-AACH-01 10 76602576 76602577 - T KAT6B 5'UTR 0.23 TCGA-DD-AACH-01 11 1028253 1028253 C A MUC6 Missense_Mutation p.D576Y 0.12 unknown(0) TCGA-DD-AACH-01 11 1028287 1028287 C G MUC6 Silent p.A564A 0.16 TCGA-DD-AACH-01 11 1247915 1247915 C T MUC5B Silent p.G90G 0.40 TCGA-DD-AACH-01 11 126075666 126075666 C A RPUSD4 Missense_Mutation p.V190L 0.30 tolerated(0.17) benign(0.084) TCGA-DD-AACH-01 11 126162928 126162935 AGTCAAAG C TIRAP Frame_Shift_Del p.Q208Hfs*29 0.25 TCGA-DD-AACH-01 11 17632533 17632533 T A OTOG Missense_Mutation p.S1908T 0.23 benign(0.008) TCGA-DD-AACH-01 11 18596904 18596904 C A UEVLD Silent p.V61V 0.22 TCGA-DD-AACH-01 11 55999712 55999712 T C OR5T2 Missense_Mutation p.Y317C 0.39 deleterious(0.01) possibly_damaging(0.874) TCGA-DD-AACH-01 11 67135046 67135046 G A CLCF1 Missense_Mutation p.P23L 0.13 deleterious(0.01) benign(0.221) TCGA-DD-AACH-01 11 6789895 6789895 T G OR2AG2 Silent p.A98A 0.10 TCGA-DD-AACH-01 12 117383227 117383227 A T FBXW8 Missense_Mutation p.Q161L 0.31 tolerated(0.18) benign(0.081) TCGA-DD-AACH-01 12 119568605 119568605 T A SRRM4 Missense_Mutation p.L246H 0.37 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-DD-AACH-01 12 129566302 129566302 A G TMEM132D Splice_Site p.X641_splice 0.39 TCGA-DD-AACH-01 12 51723540 51723540 G T CELA1 Missense_Mutation p.S229R 0.31 deleterious(0.04) benign(0.093) TCGA-DD-AACH-01 12 53647163 53647163 G T MFSD5 Missense_Mutation p.A289S 0.42 tolerated(0.07) possibly_damaging(0.856) TCGA-DD-AACH-01 12 55248916 55248916 T A MUCL1 Silent p.A25A 0.37 TCGA-DD-AACH-01 12 56295772 56295772 G T WIBG Missense_Mutation p.L167M 0.05 deleterious(0.01) probably_damaging(0.99) TCGA-DD-AACH-01 12 65563653 65563653 C T LEMD3 Missense_Mutation p.P93S 0.40 deleterious(0.01) benign(0.015) TCGA-DD-AACH-01 12 70953387 70953387 G C PTPRB Missense_Mutation p.L1484V 0.47 tolerated(0.56) benign(0.062) TCGA-DD-AACH-01 13 38154710 38154710 T C POSTN Missense_Mutation p.D506G 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AACH-01 14 24653203 24653203 C G IPO4 Splice_Site p.X623_splice 0.38 TCGA-DD-AACH-01 14 39623438 39623438 G A TRAPPC6B Nonsense_Mutation p.Q110* 0.22 TCGA-DD-AACH-01 14 96809568 96809568 T C ATG2B Missense_Mutation p.H211R 0.65 deleterious(0.04) benign(0.024) TCGA-DD-AACH-01 15 42169321 42169321 T A SPTBN5 Missense_Mutation p.N1235I 0.31 benign(0.028) TCGA-DD-AACH-01 15 42287601 42287601 G A PLA2G4E Silent p.L402L 0.36 TCGA-DD-AACH-01 15 49033713 49033713 C A CEP152 Intron 0.36 TCGA-DD-AACH-01 15 83925999 83925999 T C BNC1 3'UTR 0.45 TCGA-DD-AACH-01 16 28947906 28947906 C T CD19 Missense_Mutation p.P357S 0.47 tolerated(0.2) probably_damaging(0.986) TCGA-DD-AACH-01 16 67575468 67575468 G A FAM65A Missense_Mutation p.E333K 0.72 deleterious(0) probably_damaging(0.995) TCGA-DD-AACH-01 16 77233473 77233473 G T MON1B 3'UTR 0.58 TCGA-DD-AACH-01 17 19827755 19827755 C A AKAP10 Missense_Mutation p.D573Y 0.23 deleterious(0) probably_damaging(0.969) TCGA-DD-AACH-01 17 27869796 27869796 A G TAOK1 Missense_Mutation p.H921R 0.44 tolerated_low_confidence(0.07) benign(0.003) TCGA-DD-AACH-01 17 39190968 39190968 G - KRTAP1-3 Frame_Shift_Del p.Q36Sfs*67 0.16 TCGA-DD-AACH-01 17 39197544 39197544 G - KRTAP1-1 Frame_Shift_Del p.Q36Sfs*77 0.13 TCGA-DD-AACH-01 17 40336391 40336391 G A HCRT Silent p.H59H 0.14 TCGA-DD-AACH-01 17 48736723 48736723 C A ABCC3 Missense_Mutation p.T267K 0.36 tolerated(0.31) benign(0.081) TCGA-DD-AACH-01 17 55709212 55709212 A G MSI2 Intron 0.53 TCGA-DD-AACH-01 17 7163679 7163679 A T CLDN7 3'UTR 0.80 TCGA-DD-AACH-01 17 76121927 76121927 G T TMC6 Missense_Mutation p.R104S 0.18 deleterious(0.01) possibly_damaging(0.806) TCGA-DD-AACH-01 18 13884907 13884907 G T MC2R Missense_Mutation p.T204N 0.46 deleterious(0.02) benign(0.136) TCGA-DD-AACH-01 18 43307136 43307136 G C SLC14A1 5'UTR 0.38 TCGA-DD-AACH-01 18 43307137 43307137 C T SLC14A1 5'UTR 0.38 TCGA-DD-AACH-01 18 55373803 55373803 G C ATP8B1 Silent p.V66V 0.09 TCGA-DD-AACH-01 18 56819870 56819870 A T SEC11C Missense_Mutation p.E100D 0.43 tolerated(0.48) benign(0.02) TCGA-DD-AACH-01 19 15770377 15770377 A G CYP4F3 3'UTR 0.22 TCGA-DD-AACH-01 19 38876196 38876196 G T GGN Missense_Mutation p.A569D 0.29 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-DD-AACH-01 19 39329533 39329533 C T HNRNPL Splice_Site p.X452_splice 0.45 TCGA-DD-AACH-01 19 40408687 40408687 C A FCGBP Missense_Mutation p.Q1384H 0.37 probably_damaging(0.99) TCGA-DD-AACH-01 19 50826433 50826433 C T KCNC3 Missense_Mutation p.G593S 0.28 tolerated(0.39) possibly_damaging(0.855) TCGA-DD-AACH-01 19 50868909 50868909 C T NAPSA 5'UTR 0.30 TCGA-DD-AACH-01 19 50921101 50921101 G A POLD1 Missense_Mutation p.R1074Q 0.45 deleterious(0.02) probably_damaging(0.95) TCGA-DD-AACH-01 19 51293729 51293729 C G ACPT Missense_Mutation p.L20V 0.07 tolerated(0.27) benign(0.001) TCGA-DD-AACH-01 19 54868132 54868132 A C LAIR1 Missense_Mutation p.F184C 0.42 deleterious(0.01) probably_damaging(0.971) TCGA-DD-AACH-01 19 55494016 55494016 T A NLRP2 Missense_Mutation p.L317H 0.35 deleterious(0) probably_damaging(1) TCGA-DD-AACH-01 19 6928158 6928158 G A EMR1 Missense_Mutation p.C742Y 0.67 deleterious(0) probably_damaging(0.977) TCGA-DD-AACH-01 19 8994527 8994527 G C MUC16 Missense_Mutation p.L13789V 0.66 possibly_damaging(0.598) TCGA-DD-AACH-01 19 9298167 9298168 - T OR7D2 3'UTR 0.56 TCGA-DD-AACH-01 1 11083034 11083034 A C TARDBP 3'UTR 0.50 TCGA-DD-AACH-01 1 12185977 12185977 G A TNFRSF8 Intron 0.33 TCGA-DD-AACH-01 1 152277071 152277071 G T FLG Missense_Mutation p.Q3431K 0.06 unknown(0) TCGA-DD-AACH-01 1 156908219 156908219 T A ARHGEF11 Nonsense_Mutation p.K1395* 0.73 TCGA-DD-AACH-01 1 200522691 200522691 A G KIF14 Missense_Mutation p.L1591S 0.68 tolerated(0.2) benign(0.035) TCGA-DD-AACH-01 1 237961396 237961396 G A RYR2 Missense_Mutation p.M4672I 0.77 benign(0.001) TCGA-DD-AACH-01 1 24020395 24020395 G T RPL11 Missense_Mutation p.G86C 0.44 deleterious(0) probably_damaging(0.977) TCGA-DD-AACH-01 1 24448089 24448089 C G IL22RA1 Missense_Mutation p.E311Q 0.28 deleterious(0.01) possibly_damaging(0.876) TCGA-DD-AACH-01 1 36554502 36554502 G A ADPRHL2 5'UTR 0.37 TCGA-DD-AACH-01 1 38187384 38187384 C T EPHA10 Silent p.L698L 0.39 TCGA-DD-AACH-01 1 47881990 47881990 G A FOXE3 Translation_Start_Site p.M1? 0.32 tolerated_low_confidence(0.14) benign(0.019) TCGA-DD-AACH-01 1 79392770 79392770 A G ELTD1 Missense_Mutation p.V295A 0.39 tolerated(0.32) benign(0.019) TCGA-DD-AACH-01 20 1276779 1276779 G C SNPH Intron 0.62 TCGA-DD-AACH-01 20 23549094 23549094 G A CST9L 5'UTR 0.63 TCGA-DD-AACH-01 20 48809182 48809182 T C CEBPB 3'UTR 0.37 TCGA-DD-AACH-01 21 31973566 31973577 TGGTTTTCTGGC - KRTAP22-1 In_Frame_Del p.W43_G46del 0.21 TCGA-DD-AACH-01 21 40608663 40608663 T C BRWD1 Missense_Mutation p.N875S 0.34 deleterious(0.03) benign(0.121) TCGA-DD-AACH-01 22 18463717 18463717 G A MICAL3 Intron 0.30 TCGA-DD-AACH-01 22 19711909 19711931 GGCCCGCGCTCGCGCCGCAGCCC - GP1BB Frame_Shift_Del p.R183Vfs*118 0.11 TCGA-DD-AACH-01 22 30985180 30985180 A T PES1 Missense_Mutation p.F34L 0.49 deleterious(0) probably_damaging(0.966) TCGA-DD-AACH-01 22 40058779 40058779 A T CACNA1I Splice_Site p.X1125_splice 0.59 TCGA-DD-AACH-01 22 40804805 40804805 G T SGSM3 Nonsense_Mutation p.E621* 0.39 TCGA-DD-AACH-01 22 41569712 41569712 A G EP300 Missense_Mutation p.K1568R 0.37 probably_damaging(0.994) TCGA-DD-AACH-01 22 44285214 44285214 G C PNPLA5 Missense_Mutation p.L233V 0.35 tolerated(0.13) benign(0.001) TCGA-DD-AACH-01 2 136437817 136437817 T A R3HDM1 Silent p.S759S 0.41 TCGA-DD-AACH-01 2 161052096 161052096 C T ITGB6 Missense_Mutation p.R126H 0.27 deleterious(0) probably_damaging(0.971) TCGA-DD-AACH-01 2 168986092 168986092 G A STK39 Silent p.L350L 0.35 TCGA-DD-AACH-01 2 179455790 179455790 A C TTN Missense_Mutation p.V20221G 0.17 TCGA-DD-AACH-01 2 189873710 189873710 T C COL3A1 Missense_Mutation p.C1196R 0.39 benign(0.126) TCGA-DD-AACH-01 2 209195391 209195391 A G PIKFYVE Silent p.T1312T 0.46 TCGA-DD-AACH-01 2 27015082 27015082 A G CENPA Missense_Mutation p.I62V 0.36 deleterious(0.04) benign(0.262) TCGA-DD-AACH-01 2 48035183 48035183 T G FBXO11 3'UTR 0.40 TCGA-DD-AACH-01 2 5841128 5841128 A C SOX11 3'UTR 0.36 TCGA-DD-AACH-01 2 8822192 8822192 A C ID2 5'UTR 0.62 TCGA-DD-AACH-01 3 113376412 113376412 T C KIAA2018 Missense_Mutation p.M1373V 0.45 benign(0.002) TCGA-DD-AACH-01 3 130159279 130159279 A G COL6A5 Missense_Mutation p.I2033V 0.04 tolerated(0.34) benign(0.004) TCGA-DD-AACH-01 3 148939588 148939588 C T CP 5'UTR 0.35 TCGA-DD-AACH-01 3 158363556 158363556 G C GFM1 Missense_Mutation p.A74P 0.40 tolerated(0.12) possibly_damaging(0.516) TCGA-DD-AACH-01 3 64132537 64132537 G T PRICKLE2 Silent p.S543S 0.40 TCGA-DD-AACH-01 3 88199099 88199099 G C C3orf38 5'UTR 0.39 TCGA-DD-AACH-01 4 100057655 100057655 A C ADH4 Missense_Mutation p.F182V 0.38 tolerated(0.72) probably_damaging(0.999) TCGA-DD-AACH-01 4 123814266 123814266 A G NUDT6 Missense_Mutation p.M223T 0.39 deleterious(0) probably_damaging(0.946) TCGA-DD-AACH-01 4 13485895 13485895 C A RAB28 5'UTR 0.40 TCGA-DD-AACH-01 4 155507834 155507834 C G FGA Missense_Mutation p.K249N 0.36 tolerated(0.15) benign(0.004) TCGA-DD-AACH-01 4 39482004 39482004 C T LIAS 3'Flank 0.35 TCGA-DD-AACH-01 4 55524107 55524114 GCTTTGCC - KIT 5'UTR 0.23 TCGA-DD-AACH-01 4 57173769 57173769 C T KIAA1211 Silent p.N63N 0.34 TCGA-DD-AACH-01 4 62845284 62845284 A G LPHN3 Missense_Mutation p.S869G 0.44 tolerated(0.54) benign(0.001) TCGA-DD-AACH-01 4 68703989 68703989 T C TMPRSS11D Missense_Mutation p.N126D 0.39 tolerated(0.94) benign(0.345) TCGA-DD-AACH-01 4 74286009 74286012 CTTA - ALB Frame_Shift_Del p.L609Nfs*33 0.41 TCGA-DD-AACH-01 5 131811415 131811415 T C AC116366.6 5'Flank 0.05 TCGA-DD-AACH-01 5 138269736 138269736 G A CTNNA1 Silent p.P893P 0.62 TCGA-DD-AACH-01 5 13876819 13876819 T A DNAH5 Missense_Mutation p.S1124C 0.47 possibly_damaging(0.7) TCGA-DD-AACH-01 5 140262783 140262783 C T PCDHA13 Silent p.F310F 0.60 TCGA-DD-AACH-01 5 151784456 151784456 G A NMUR2 Silent p.H73H 0.32 TCGA-DD-AACH-01 5 37213755 37213755 C A C5orf42 Missense_Mutation p.M942I 0.40 deleterious(0) probably_damaging(0.98) TCGA-DD-AACH-01 5 66430370 66430370 A G MAST4 Missense_Mutation p.Y749C 0.38 probably_damaging(0.999) TCGA-DD-AACH-01 5 76254694 76254694 G A CRHBP Missense_Mutation p.V225I 0.10 tolerated(0.38) benign(0.008) TCGA-DD-AACH-01 6 130763545 130763545 A T TMEM200A 3'UTR 0.64 TCGA-DD-AACH-01 6 1613791 1613791 G A FOXC1 3'UTR 0.29 TCGA-DD-AACH-01 6 27277615 27277615 T C POM121L2 Missense_Mutation p.T779A 0.44 tolerated(0.41) benign(0.009) TCGA-DD-AACH-01 6 55739686 55739686 A G BMP5 5'UTR 0.42 TCGA-DD-AACH-01 7 156555801 156555801 C A LMBR1 Splice_Site p.X207_splice 0.51 TCGA-DD-AACH-01 7 21847599 21847599 G A DNAH11 Missense_Mutation p.G3429R 0.50 probably_damaging(1) TCGA-DD-AACH-01 7 31735231 31735231 A T PPP1R17 Silent p.I77I 0.56 TCGA-DD-AACH-01 7 35288373 35288373 G A TBX20 Missense_Mutation p.P154L 0.54 deleterious(0.01) probably_damaging(0.938) TCGA-DD-AACH-01 7 55990926 55990926 A T MRPS17 Missense_Mutation p.Q40H 0.15 tolerated_low_confidence(0.08) unknown(0) TCGA-DD-AACH-01 7 72419537 72419537 T G POM121 3'UTR 0.81 TCGA-DD-AACH-01 7 95820436 95820436 C A SLC25A13 Missense_Mutation p.V247F 0.87 tolerated(0.55) benign(0.009) TCGA-DD-AACH-01 8 104415462 104415462 C A SLC25A32 Missense_Mutation p.R161L 0.23 tolerated(0.21) benign(0.44) TCGA-DD-AACH-01 8 14711017 14711017 G A SGCZ Intron 0.67 TCGA-DD-AACH-01 8 42401693 42401693 C G SMIM19 Silent p.T26T 0.34 TCGA-DD-AACH-01 8 70591797 70591797 T A SLCO5A1 Missense_Mutation p.T614S 0.23 tolerated(0.29) benign(0.17) TCGA-DD-AACH-01 8 75932274 75932274 C T CRISPLD1 Nonsense_Mutation p.Q402* 0.30 TCGA-DD-AACH-01 8 93029765 93029765 A T RUNX1T1 Intron 0.14 TCGA-DD-AACH-01 8 94936844 94936849 TAAAGA - PDP1 3'UTR 0.33 TCGA-DD-AACH-01 9 107623868 107623868 T A ABCA1 Intron 0.53 TCGA-DD-AACH-01 9 136338644 136338644 G C SLC2A6 Missense_Mutation p.T372S 0.21 tolerated(0.38) benign(0.258) TCGA-DD-AACH-01 9 32457126 32457126 G T DDX58 Silent p.S924S 0.22 TCGA-DD-AACH-01 X 13680785 13680786 AC - TCEANC Frame_Shift_Del p.Y83* 0.41 TCGA-DD-AACH-01 X 14863073 14863093 TTAGGACAGTTACCACTTTCT C FANCB Frame_Shift_Del p.E605Rfs*46 0.63 TCGA-DD-AACH-01 X 53617377 53617377 G A HUWE1 Missense_Mutation p.A1393V 0.85 benign(0.04) TCGA-DD-AACH-01 X 55478905 55478905 C A MAGEH1 Missense_Mutation p.T33N 0.75 deleterious_low_confidence(0) benign(0.075) TCGA-DD-AACI-01 10 105191888 105191888 A T PDCD11 Missense_Mutation p.E1124V 0.09 tolerated(0.13) benign(0.027) TCGA-DD-AACI-01 10 106865232 106865232 A C SORCS3 Missense_Mutation p.I391L 0.21 tolerated(0.69) benign(0.006) TCGA-DD-AACI-01 10 116608453 116608453 A G FAM160B1 Missense_Mutation p.E587G 0.17 tolerated(0.1) benign(0.289) TCGA-DD-AACI-01 10 120790969 120790969 T C NANOS1 3'UTR 0.14 TCGA-DD-AACI-01 10 127526783 127526783 A T DHX32 Silent p.S685S 0.17 TCGA-DD-AACI-01 10 128150126 128150126 T A C10orf90 Silent p.V521V 0.08 TCGA-DD-AACI-01 10 128193605 128193605 G A C10orf90 Missense_Mutation p.S55F 0.22 deleterious(0) probably_damaging(0.999) TCGA-DD-AACI-01 10 128974643 128974643 G T FAM196A Missense_Mutation p.T6N 0.21 tolerated(0.16) benign(0.168) TCGA-DD-AACI-01 10 21169807 21169807 A T NEBL Silent p.A132A 0.15 TCGA-DD-AACI-01 10 58117673 58117673 T C ZWINT 3'UTR 0.25 TCGA-DD-AACI-01 10 5925099 5925099 G A ANKRD16 Missense_Mutation p.A240V 0.16 tolerated(0.09) possibly_damaging(0.493) TCGA-DD-AACI-01 10 61043201 61043201 C T FAM13C Missense_Mutation p.A172T 0.13 tolerated(0.51) benign(0.119) TCGA-DD-AACI-01 10 61112104 61112104 T C FAM13C Missense_Mutation p.M84V 0.28 deleterious_low_confidence(0) benign(0.138) TCGA-DD-AACI-01 10 70980067 70980067 C T HKDC1 5'UTR 0.32 TCGA-DD-AACI-01 10 73544795 73544795 G A CDH23 Missense_Mutation p.A1889T 0.24 deleterious(0.03) benign(0.071) TCGA-DD-AACI-01 10 89720791 89720791 A G PTEN Silent p.E314E 0.14 TCGA-DD-AACI-01 10 91066479 91066479 T A IFIT2 Missense_Mutation p.F256I 0.10 deleterious(0) possibly_damaging(0.811) TCGA-DD-AACI-01 10 98144429 98144429 G A TLL2 Silent p.I703I 0.40 TCGA-DD-AACI-01 10 99527306 99527306 A T SFRP5 Missense_Mutation p.Y307N 0.26 tolerated_low_confidence(0.1) benign(0.09) TCGA-DD-AACI-01 11 1030299 1030299 T A MUC6 Missense_Mutation p.E310V 0.15 unknown(0) TCGA-DD-AACI-01 11 110451149 110451149 T C ARHGAP20 Missense_Mutation p.T841A 0.27 tolerated(0.24) benign(0) TCGA-DD-AACI-01 11 118359362 118359362 C T KMT2A Missense_Mutation p.H1456Y 0.22 probably_damaging(0.985) TCGA-DD-AACI-01 11 11944273 11944273 A G USP47 Silent p.K339K 0.17 TCGA-DD-AACI-01 11 1282937 1282937 C T MUC5B 3'UTR 0.27 TCGA-DD-AACI-01 11 132081914 132081914 A T NTM Splice_Site p.X134_splice 0.31 TCGA-DD-AACI-01 11 2291880 2291880 C T ASCL2 5'UTR 0.13 TCGA-DD-AACI-01 11 24936037 24936037 G T LUZP2 Missense_Mutation p.A159S 0.12 tolerated(0.09) benign(0.034) TCGA-DD-AACI-01 11 24936045 24936045 G A LUZP2 Silent p.L161L 0.13 TCGA-DD-AACI-01 11 32413561 32413561 G T WT1 Silent p.S463S 0.17 TCGA-DD-AACI-01 11 32875132 32875132 T G PRRG4 3'UTR 0.31 TCGA-DD-AACI-01 11 48188835 48188835 A G PTPRJ Missense_Mutation p.Q1312R 0.18 deleterious(0) probably_damaging(0.999) TCGA-DD-AACI-01 11 55340485 55340485 T A OR4C16 Missense_Mutation p.S294R 0.07 deleterious(0) benign(0.142) TCGA-DD-AACI-01 11 5757966 5757966 A T OR56B1 Missense_Mutation p.I74F 0.21 tolerated(0.07) benign(0.078) TCGA-DD-AACI-01 11 58275100 58275100 C T OR5B21 Missense_Mutation p.G160D 0.06 tolerated_low_confidence(1) benign(0.002) TCGA-DD-AACI-01 11 59814496 59814496 A G OOSP2 Missense_Mutation p.T143A 0.38 tolerated(0.42) benign(0.009) TCGA-DD-AACI-01 11 60264908 60264908 A T MS4A12 Missense_Mutation p.L39F 0.07 tolerated(0.71) benign(0.26) TCGA-DD-AACI-01 11 61557259 61557259 T A TMEM258 Intron 0.25 TCGA-DD-AACI-01 11 62594819 62594819 T C STX5 Silent p.T116T 0.12 TCGA-DD-AACI-01 11 62648792 62648792 C A SLC3A2 Silent p.A201A 0.23 TCGA-DD-AACI-01 11 66189687 66189687 A G NPAS4 Missense_Mutation p.E91G 0.17 deleterious(0) possibly_damaging(0.447) TCGA-DD-AACI-01 11 76751320 76751320 G A B3GNT6 Missense_Mutation p.G242D 0.36 tolerated(1) benign(0.003) TCGA-DD-AACI-01 11 836089 836089 A G CD151 Missense_Mutation p.K7R 0.16 tolerated(0.11) benign(0.266) TCGA-DD-AACI-01 11 88780420 88780420 C A GRM5 Missense_Mutation p.K207N 0.14 deleterious(0.03) probably_damaging(0.927) TCGA-DD-AACI-01 11 94281892 94281892 C G FUT4 3'UTR 0.47 TCGA-DD-AACI-01 12 107075779 107075779 G T RFX4 Missense_Mutation p.R117S 0.14 deleterious(0) possibly_damaging(0.526) TCGA-DD-AACI-01 12 108685482 108685482 T G CMKLR1 3'UTR 0.35 TCGA-DD-AACI-01 12 114793650 114793650 A G TBX5 Missense_Mutation p.V415A 0.21 deleterious(0) benign(0.05) TCGA-DD-AACI-01 12 123472882 123472882 T A PITPNM2 Missense_Mutation p.N966Y 0.22 tolerated(0.33) benign(0.406) TCGA-DD-AACI-01 12 124335527 124335527 G A DNAH10 Silent p.S1947S 0.17 TCGA-DD-AACI-01 12 126139052 126139052 T C TMEM132B Silent p.N1011N 0.15 TCGA-DD-AACI-01 12 129558522 129558522 C G TMEM132D Silent p.V1066V 0.32 TCGA-DD-AACI-01 12 15777209 15777209 G T EPS8 Missense_Mutation p.T726K 0.31 tolerated(0.28) benign(0.046) TCGA-DD-AACI-01 12 18435472 18435472 A G PIK3C2G Missense_Mutation p.K153E 0.14 tolerated_low_confidence(0.31) benign(0.004) TCGA-DD-AACI-01 12 21695505 21695505 T C GYS2 Missense_Mutation p.I524V 0.19 tolerated(0.63) possibly_damaging(0.852) TCGA-DD-AACI-01 12 42835193 42835193 C G PPHLN1 Missense_Mutation p.S329C 0.10 deleterious(0.03) probably_damaging(0.992) TCGA-DD-AACI-01 12 5155567 5155567 T C KCNA5 3'UTR 0.16 TCGA-DD-AACI-01 12 52760838 52760838 A G KRT85 Missense_Mutation p.C118R 0.18 tolerated(0.64) benign(0.047) TCGA-DD-AACI-01 12 53163335 53163335 A G KRT76 Missense_Mutation p.I506T 0.14 deleterious(0) possibly_damaging(0.835) TCGA-DD-AACI-01 12 53343284 53343284 G A KRT18 Silent p.E109E 0.13 TCGA-DD-AACI-01 12 54756289 54756289 A G GPR84 3'UTR 0.14 TCGA-DD-AACI-01 12 56320927 56320927 G A WIBG Intron 0.05 TCGA-DD-AACI-01 12 56490238 56490238 G C ERBB3 Intron 0.43 TCGA-DD-AACI-01 12 56645879 56645879 T C ANKRD52 Silent p.R504R 0.14 TCGA-DD-AACI-01 12 57874572 57874572 T C ARHGAP9 5'Flank 0.04 TCGA-DD-AACI-01 12 667798 667798 A T B4GALNT3 Missense_Mutation p.H911L 0.23 deleterious(0.04) possibly_damaging(0.493) TCGA-DD-AACI-01 12 67692842 67692842 A G CAND1 Missense_Mutation p.M323V 0.21 tolerated(0.28) benign(0.006) TCGA-DD-AACI-01 12 72037930 72037930 T C ZFC3H1 Missense_Mutation p.E483G 0.12 deleterious(0) probably_damaging(0.99) TCGA-DD-AACI-01 12 7248953 7248953 C A C1RL 3'UTR 0.38 TCGA-DD-AACI-01 12 77426865 77426865 T A E2F7 Silent p.A449A 0.18 TCGA-DD-AACI-01 12 81647343 81647343 T A ACSS3 Missense_Mutation p.V630E 0.17 deleterious(0) probably_damaging(0.986) TCGA-DD-AACI-01 12 83251361 83251361 T A TMTC2 Splice_Site p.X218_splice 0.16 TCGA-DD-AACI-01 12 88542128 88542128 A T TMTC3 Silent p.I12I 0.20 TCGA-DD-AACI-01 12 90020267 90020267 T A ATP2B1 Nonsense_Mutation p.K365* 0.15 TCGA-DD-AACI-01 12 92537689 92537689 T C BTG1 3'UTR 0.25 TCGA-DD-AACI-01 12 99898358 99898358 G T ANKS1B Missense_Mutation p.T445K 0.13 tolerated(0.08) benign(0.131) TCGA-DD-AACI-01 13 100008403 100008403 C G UBAC2 Intron 0.13 TCGA-DD-AACI-01 13 25745258 25745258 A G AMER2 Missense_Mutation p.L167P 0.12 deleterious(0) probably_damaging(0.999) TCGA-DD-AACI-01 13 27256869 27256869 C T WASF3 Missense_Mutation p.P370L 0.17 tolerated(0.16) benign(0.015) TCGA-DD-AACI-01 13 37453652 37453652 G T SMAD9 Missense_Mutation p.L59I 0.15 tolerated(0.64) probably_damaging(1) TCGA-DD-AACI-01 13 37563694 37563694 T C ALG5 Missense_Mutation p.Q125R 0.18 tolerated(0.3) benign(0.002) TCGA-DD-AACI-01 13 52606490 52606490 A G UTP14C 3'UTR 0.25 TCGA-DD-AACI-01 13 52607696 52607696 A T UTP14C 3'UTR 0.19 TCGA-DD-AACI-01 13 84454782 84454782 T A SLITRK1 Silent p.P287P 0.30 TCGA-DD-AACI-01 14 102027794 102027794 C G DIO3 5'UTR 0.27 TCGA-DD-AACI-01 14 105414392 105414392 C T AHNAK2 Missense_Mutation p.E2466K 0.20 benign(0.037) TCGA-DD-AACI-01 14 107034964 107034964 A T IGHV5-51 Missense_Mutation p.I39N 0.11 deleterious(0.01) benign(0.097) TCGA-DD-AACI-01 14 20443792 20443792 C A OR4K15 Missense_Mutation p.L39M 0.18 deleterious(0.01) benign(0.373) TCGA-DD-AACI-01 14 23859444 23859444 A T MYH6 Missense_Mutation p.L1185Q 0.13 deleterious(0.03) probably_damaging(1) TCGA-DD-AACI-01 14 23885305 23885305 C A MYH7 Missense_Mutation p.D1621Y 0.15 deleterious(0) probably_damaging(0.997) TCGA-DD-AACI-01 14 45473485 45473485 A T FAM179B Nonsense_Mutation p.K854* 0.18 TCGA-DD-AACI-01 14 52486849 52486849 A T NID2 Missense_Mutation p.Y908N 0.18 deleterious(0.03) possibly_damaging(0.772) TCGA-DD-AACI-01 14 60923752 60923752 C G C14orf39 Missense_Mutation p.R414T 0.16 tolerated(0.16) possibly_damaging(0.765) TCGA-DD-AACI-01 14 63757723 63757723 G A RHOJ Missense_Mutation p.S209N 0.21 tolerated(0.8) benign(0) TCGA-DD-AACI-01 14 67589018 67589018 A T GPHN Missense_Mutation p.S558C 0.18 deleterious(0) probably_damaging(0.946) TCGA-DD-AACI-01 14 68264872 68264872 T A ZFYVE26 Missense_Mutation p.S703C 0.12 tolerated(0.06) benign(0.163) TCGA-DD-AACI-01 14 74428174 74428177 GTCC - COQ6 Frame_Shift_Del p.V371Ifs*32 0.16 TCGA-DD-AACI-01 14 75018988 75018988 G A LTBP2 Missense_Mutation p.P434L 0.25 tolerated(0.21) benign(0.002) TCGA-DD-AACI-01 14 90650745 90650745 T C KCNK13 Missense_Mutation p.S209P 0.27 deleterious(0.01) possibly_damaging(0.864) TCGA-DD-AACI-01 14 94964148 94964148 A G SERPINA12 Missense_Mutation p.I196T 0.30 deleterious(0) probably_damaging(0.96) TCGA-DD-AACI-01 14 95577654 95577654 T A DICER1 Silent p.A752A 0.12 TCGA-DD-AACI-01 15 101420114 101420114 T C ALDH1A3 Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0) possibly_damaging(0.822) TCGA-DD-AACI-01 15 25971123 25971123 A G ATP10A Silent p.V318V 0.29 TCGA-DD-AACI-01 15 34072456 34072456 C T RYR3 Missense_Mutation p.A3061V 0.14 probably_damaging(0.96) TCGA-DD-AACI-01 15 35253000 35253000 A G AQR Missense_Mutation p.Y50H 0.20 deleterious(0) possibly_damaging(0.548) TCGA-DD-AACI-01 15 40226374 40226374 C G EIF2AK4 5'UTR 0.22 TCGA-DD-AACI-01 15 42302319 42302319 C G PLA2G4E Intron 0.50 TCGA-DD-AACI-01 15 48062884 48062884 A G SEMA6D Silent p.T708T 0.31 TCGA-DD-AACI-01 15 52244087 52244087 G A LEO1 Missense_Mutation p.P522L 0.15 deleterious(0) probably_damaging(0.992) TCGA-DD-AACI-01 15 59350608 59350608 G C RNF111 Missense_Mutation p.A409P 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.701) TCGA-DD-AACI-01 15 73636059 73636059 G - HCN4 Frame_Shift_Del p.T293Hfs*43 0.17 TCGA-DD-AACI-01 15 73843382 73843382 T C C15orf60 Missense_Mutation p.V146A 0.24 deleterious(0) probably_damaging(0.972) TCGA-DD-AACI-01 15 74914530 74914530 C A CLK3 Silent p.R295R 0.35 TCGA-DD-AACI-01 15 78765662 78765662 A T IREB2 Missense_Mutation p.E321V 0.18 deleterious(0) possibly_damaging(0.481) TCGA-DD-AACI-01 15 79589515 79589515 T A ANKRD34C 3'UTR 0.21 TCGA-DD-AACI-01 16 11001808 11001808 G T CIITA Missense_Mutation p.G820V 0.12 tolerated(0.51) benign(0.288) TCGA-DD-AACI-01 16 111826 111826 T A RHBDF1 Missense_Mutation p.K393M 0.11 deleterious(0) possibly_damaging(0.75) TCGA-DD-AACI-01 16 11772998 11772998 T C TXNDC11 3'UTR 0.08 TCGA-DD-AACI-01 16 11933580 11933580 T C RSL1D1 Missense_Mutation p.K373R 0.12 tolerated(0.51) benign(0.004) TCGA-DD-AACI-01 16 1261288 1261288 T A CACNA1H Silent p.G1448G 0.12 TCGA-DD-AACI-01 16 1496643 1496643 C T CLCN7 Missense_Mutation p.A803T 0.14 tolerated(0.22) benign(0.013) TCGA-DD-AACI-01 16 23083412 23083412 C A USP31 Silent p.S814S 0.32 TCGA-DD-AACI-01 16 2348419 2348419 T C ABCA3 Missense_Mutation p.T622A 0.13 deleterious(0) probably_damaging(0.998) TCGA-DD-AACI-01 16 25162880 25162880 A G LCMT1 Missense_Mutation p.K137R 0.16 tolerated(0.43) benign(0.003) TCGA-DD-AACI-01 16 25703870 25703870 T C HS3ST4 Silent p.S44S 0.12 TCGA-DD-AACI-01 16 28996206 28996206 G T LAT Missense_Mutation p.W8C 0.15 benign(0.028) TCGA-DD-AACI-01 16 31374277 31374277 T A ITGAX Missense_Mutation p.S461T 0.20 tolerated(0.19) probably_damaging(0.958) TCGA-DD-AACI-01 16 4015970 4015970 T C ADCY9 Missense_Mutation p.K1290E 0.17 tolerated_low_confidence(0.05) benign(0.018) TCGA-DD-AACI-01 16 4405166 4405166 T A CORO7 Splice_Site p.X925_splice 0.14 TCGA-DD-AACI-01 16 66969499 66969499 G T CES2 Missense_Mutation p.Q51H 0.27 deleterious(0.02) benign(0.102) TCGA-DD-AACI-01 16 72830306 72830306 A G ZFHX3 Missense_Mutation p.M2092T 0.29 possibly_damaging(0.769) TCGA-DD-AACI-01 16 84215474 84215474 G A TAF1C Silent p.S304S 0.11 TCGA-DD-AACI-01 17 15907197 15907197 A T TTC19 Missense_Mutation p.K172M 0.17 deleterious(0.01) possibly_damaging(0.77) TCGA-DD-AACI-01 17 16638585 16638585 G C CCDC144A Missense_Mutation p.L1000F 0.22 tolerated(0.06) possibly_damaging(0.905) TCGA-DD-AACI-01 17 17075128 17075128 C T MPRIP Nonsense_Mutation p.R754* 0.18 TCGA-DD-AACI-01 17 19844215 19844215 G A AKAP10 Silent p.L390L 0.09 TCGA-DD-AACI-01 17 26697248 26697248 T A VTN 5'UTR 0.18 TCGA-DD-AACI-01 17 28296107 28296107 T A EFCAB5 Silent p.T163T 0.12 TCGA-DD-AACI-01 17 32907997 32907997 C T TMEM132E 5'UTR 0.24 TCGA-DD-AACI-01 17 3475495 3475495 T - SHPK Frame_Shift_Del p.R718Gfs*31 0.09 TCGA-DD-AACI-01 17 35297689 35297689 C T LHX1 Silent p.C91C 0.15 TCGA-DD-AACI-01 17 35614734 35614734 T C ACACA Missense_Mutation p.N573D 0.11 deleterious(0.05) probably_damaging(0.99) TCGA-DD-AACI-01 17 36829800 36829800 T C C17orf96 Missense_Mutation p.N317D 0.36 tolerated(1) benign(0) TCGA-DD-AACI-01 17 39471826 39471826 G A KRTAP17-1 Missense_Mutation p.P26L 0.12 unknown(0) TCGA-DD-AACI-01 17 40063809 40063810 - C ACLY Frame_Shift_Ins p.V212Sfs*5 0.30 TCGA-DD-AACI-01 17 43227728 43227728 T C HEXIM1 3'UTR 0.14 TCGA-DD-AACI-01 17 48245087 48245087 A T SGCA Missense_Mutation p.Q101L 0.20 tolerated(0.1) benign(0.049) TCGA-DD-AACI-01 17 49302381 49302381 T C MBTD1 Missense_Mutation p.K48E 0.15 tolerated(0.06) possibly_damaging(0.642) TCGA-DD-AACI-01 17 51900390 51900390 T C KIF2B 5'UTR 0.17 TCGA-DD-AACI-01 17 54939189 54939189 T A DGKE Nonsense_Mutation p.L441* 0.10 TCGA-DD-AACI-01 17 56382773 56382773 C A BZRAP1 Missense_Mutation p.G1803V 0.10 deleterious(0.01) benign(0.371) TCGA-DD-AACI-01 17 58236797 58236797 T A CA4 3'UTR 0.17 TCGA-DD-AACI-01 17 61278235 61278235 C A TANC2 Missense_Mutation p.T155K 0.17 tolerated(0.84) benign(0.028) TCGA-DD-AACI-01 17 61432424 61432424 T C TANC2 Missense_Mutation p.V678A 0.14 deleterious(0) probably_damaging(0.978) TCGA-DD-AACI-01 17 61513081 61513081 C T CYB561 Missense_Mutation p.G125R 0.12 deleterious(0) probably_damaging(1) TCGA-DD-AACI-01 17 62533182 62533182 A G CEP95 Missense_Mutation p.I747M 0.26 deleterious(0.01) possibly_damaging(0.89) TCGA-DD-AACI-01 17 644672 644672 C G FAM57A Silent p.L212L 0.09 TCGA-DD-AACI-01 17 66521090 66521090 A C PRKAR1A Silent p.G180G 0.21 TCGA-DD-AACI-01 17 72694567 72694567 A T CD300LF Missense_Mutation p.L167Q 0.14 deleterious(0) probably_damaging(0.994) TCGA-DD-AACI-01 17 74266433 74266433 C T UBALD2 Silent p.A114A 0.17 TCGA-DD-AACI-01 17 76121042 76121042 C - TMC6 Frame_Shift_Del p.K188Sfs*40 0.10 TCGA-DD-AACI-01 17 76778291 76778291 G C CYTH1 Missense_Mutation p.D5E 0.11 tolerated(1) benign(0) TCGA-DD-AACI-01 17 7760817 7760817 T A LSMD1 5'UTR 0.14 TCGA-DD-AACI-01 17 79095855 79095855 T A AATK Silent p.A627A 0.11 TCGA-DD-AACI-01 17 79268727 79268727 G A SLC38A10 5'UTR 0.11 TCGA-DD-AACI-01 17 79423558 79423558 G A RP11-1055B8.7 Missense_Mutation p.R1602Q 0.17 possibly_damaging(0.477) TCGA-DD-AACI-01 17 7946179 7946179 A T ALOX15B Missense_Mutation p.N218I 0.18 tolerated(0.44) benign(0.035) TCGA-DD-AACI-01 17 8783786 8783786 C G PIK3R5 3'UTR 0.14 TCGA-DD-AACI-01 17 8926031 8926031 C T NTN1 Missense_Mutation p.P114L 0.13 deleterious(0.04) possibly_damaging(0.636) TCGA-DD-AACI-01 17 9604502 9604502 G A USP43 Silent p.A534A 0.13 TCGA-DD-AACI-01 18 13612584 13612585 - T LDLRAD4 Intron 0.22 TCGA-DD-AACI-01 18 28979346 28979346 A T DSG4 Nonsense_Mutation p.R373* 0.21 TCGA-DD-AACI-01 18 33289830 33289830 G T GALNT1 3'UTR 0.38 TCGA-DD-AACI-01 18 47432876 47432876 C T MYO5B Missense_Mutation p.R776Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-DD-AACI-01 18 7013922 7013922 G A LAMA1 Silent p.P1085P 0.19 TCGA-DD-AACI-01 18 71959117 71959117 T C CYB5A 5'UTR 0.30 TCGA-DD-AACI-01 19 1003596 1003596 A T GRIN3B Missense_Mutation p.Q298H 0.08 deleterious(0) benign(0.401) TCGA-DD-AACI-01 19 11917800 11917800 A T ZNF491 Silent p.I344I 0.31 TCGA-DD-AACI-01 19 12575440 12575440 G T ZNF709 Silent p.S432S 0.16 TCGA-DD-AACI-01 19 12822277 12822277 T C TNPO2 Splice_Site p.X318_splice 0.09 TCGA-DD-AACI-01 19 13873731 13873731 G A CCDC130 Missense_Mutation p.S347N 0.38 tolerated(0.2) benign(0.175) TCGA-DD-AACI-01 19 15163033 15163033 T A CASP14 5'UTR 0.08 TCGA-DD-AACI-01 19 15586592 15586592 T A PGLYRP2 Missense_Mutation p.S297C 0.10 deleterious(0) possibly_damaging(0.886) TCGA-DD-AACI-01 19 1854493 1854493 T A KLF16 Missense_Mutation p.S242C 0.35 deleterious(0) unknown(0) TCGA-DD-AACI-01 19 18961531 18961531 A T UPF1 Missense_Mutation p.I222F 0.06 deleterious(0.03) benign(0.025) TCGA-DD-AACI-01 19 362077 362077 T C THEG 3'UTR 0.32 TCGA-DD-AACI-01 19 4171378 4171378 A G CREB3L3 Splice_Site p.X326_splice 0.40 TCGA-DD-AACI-01 19 4258386 4258386 A T CCDC94 Missense_Mutation p.R185W 0.07 deleterious(0) possibly_damaging(0.838) TCGA-DD-AACI-01 19 44012166 44012166 C T ETHE1 Silent p.R214R 0.12 TCGA-DD-AACI-01 19 44469460 44469460 A T ZNF221 Missense_Mutation p.Q95L 0.10 tolerated(0.06) benign(0.013) TCGA-DD-AACI-01 19 48806026 48806026 T A CCDC114 Nonsense_Mutation p.K352* 0.13 TCGA-DD-AACI-01 19 49954058 49954058 T A PIH1D1 Silent p.T46T 0.37 TCGA-DD-AACI-01 19 50752386 50752386 A T MYH14 Missense_Mutation p.E491V 0.09 deleterious(0) probably_damaging(1) TCGA-DD-AACI-01 19 50984225 50984225 C T EMC10 Silent p.F223F 0.17 TCGA-DD-AACI-01 19 51201148 51201148 A T SHANK1 Missense_Mutation p.S605T 0.28 benign(0.292) TCGA-DD-AACI-01 19 53116213 53116213 A T ZNF83 3'UTR 0.47 TCGA-DD-AACI-01 19 53384338 53384338 A T ZNF320 Missense_Mutation p.H347Q 0.28 deleterious(0) probably_damaging(1) TCGA-DD-AACI-01 19 541500 541500 C T CDC34 Missense_Mutation p.A220V 0.10 deleterious(0.05) benign(0.079) TCGA-DD-AACI-01 19 54545063 54545063 A G VSTM1 Silent p.D187D 0.19 TCGA-DD-AACI-01 19 55858819 55858819 A T SUV420H2 3'UTR 0.06 TCGA-DD-AACI-01 19 56109118 56109118 C G FIZ1 Silent p.L38L 0.09 TCGA-DD-AACI-01 19 56896349 56896349 T A ZNF582 Missense_Mutation p.H146L 0.39 tolerated(0.42) benign(0.007) TCGA-DD-AACI-01 19 58806178 58806178 A T ZNF8 Missense_Mutation p.H335L 0.06 deleterious(0) probably_damaging(0.999) TCGA-DD-AACI-01 19 6670072 6670072 C G TNFSF14 Missense_Mutation p.E3D 0.07 tolerated(0.64) benign(0.009) TCGA-DD-AACI-01 19 8387768 8387768 A C KANK3 Silent p.G807G 0.12 TCGA-DD-AACI-01 19 8966763 8966763 G A MUC16 Missense_Mutation p.P14397L 0.14 probably_damaging(0.94) TCGA-DD-AACI-01 19 920895 920895 T A KISS1R 3'UTR 0.10 TCGA-DD-AACI-01 1 114354782 114354782 C G RSBN1 Missense_Mutation p.V85L 0.18 tolerated_low_confidence(0.08) benign(0.198) TCGA-DD-AACI-01 1 11897423 11897423 A G CLCN6 Missense_Mutation p.Y721C 0.10 tolerated(0.11) possibly_damaging(0.619) TCGA-DD-AACI-01 1 12251908 12251908 A G TNFRSF1B Missense_Mutation p.S129G 0.18 tolerated(0.48) benign(0) TCGA-DD-AACI-01 1 152280279 152280279 T C FLG Silent p.R2361R 0.08 TCGA-DD-AACI-01 1 152282724 152282724 A G FLG Silent p.N1546N 0.04 TCGA-DD-AACI-01 1 152382558 152382558 C A CRNN Missense_Mutation p.G334C 0.18 deleterious(0.01) possibly_damaging(0.598) TCGA-DD-AACI-01 1 153029021 153029021 T A SPRR2A Missense_Mutation p.Q64L 0.06 deleterious_low_confidence(0) unknown(0) TCGA-DD-AACI-01 1 154243398 154243398 A G UBAP2L 3'Flank 0.05 TCGA-DD-AACI-01 1 154744565 154744565 A G KCNN3 Missense_Mutation p.F445S 0.04 deleterious(0.01) benign(0.019) TCGA-DD-AACI-01 1 156496381 156496381 T A IQGAP3 Missense_Mutation p.Q1598L 0.09 deleterious(0) probably_damaging(0.946) TCGA-DD-AACI-01 1 156565217 156565217 C T GPATCH4 Missense_Mutation p.E306K 0.05 tolerated_low_confidence(0.1) benign(0.005) TCGA-DD-AACI-01 1 156640722 156640722 T A NES Silent p.S1086S 0.07 TCGA-DD-AACI-01 1 156697395 156697395 T A ISG20L2 Missense_Mutation p.K17M 0.12 deleterious(0) possibly_damaging(0.86) TCGA-DD-AACI-01 1 156901783 156901783 C T LRRC71 Missense_Mutation p.P469S 0.13 tolerated(0.09) benign(0.303) TCGA-DD-AACI-01 1 1571767 1571767 T A CDK11B Missense_Mutation p.E668V 0.42 unknown(0) TCGA-DD-AACI-01 1 158064686 158064686 T A KIRREL Missense_Mutation p.Y684N 0.08 deleterious(0.03) possibly_damaging(0.723) TCGA-DD-AACI-01 1 158326761 158326761 T C CD1E 3'Flank 0.06 TCGA-DD-AACI-01 1 158592934 158592934 C A SPTA1 Nonsense_Mutation p.E1987* 0.10 TCGA-DD-AACI-01 1 159825697 159825697 C G VSIG8 Missense_Mutation p.C316S 0.18 tolerated_low_confidence(0.39) benign(0.09) TCGA-DD-AACI-01 1 159825698 159825698 A T VSIG8 Missense_Mutation p.C316S 0.18 tolerated_low_confidence(0.39) benign(0.09) TCGA-DD-AACI-01 1 161016886 161016886 G A ARHGAP30 3'UTR 0.27 TCGA-DD-AACI-01 1 161180452 161180452 A T NDUFS2 Missense_Mutation p.Q313L 0.07 tolerated(0.4) benign(0.004) TCGA-DD-AACI-01 1 167096866 167096866 T A DUSP27 Missense_Mutation p.L833Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-DD-AACI-01 1 16721854 16721854 A T SZRD1 3'UTR 0.35 TCGA-DD-AACI-01 1 16748442 16748442 A T SPATA21 Missense_Mutation p.L20Q 0.26 tolerated(0.16) possibly_damaging(0.504) TCGA-DD-AACI-01 1 171707601 171707601 C A VAMP4 Intron 0.04 TCGA-DD-AACI-01 1 172558774 172558774 A T SUCO Missense_Mutation p.I845L 0.04 tolerated(0.32) benign(0) TCGA-DD-AACI-01 1 172577940 172577940 A T SUCO Nonsense_Mutation p.K1107* 0.09 TCGA-DD-AACI-01 1 173456893 173456893 T C PRDX6 Missense_Mutation p.V189A 0.05 deleterious(0) benign(0.393) TCGA-DD-AACI-01 1 175293604 175293604 T C TNR Missense_Mutation p.D1282G 0.24 deleterious(0) probably_damaging(1) TCGA-DD-AACI-01 1 175334337 175334337 G C TNR Missense_Mutation p.P799R 0.54 deleterious(0.02) probably_damaging(1) TCGA-DD-AACI-01 1 179497527 179497527 T C AXDND1 Silent p.H892H 0.16 TCGA-DD-AACI-01 1 179544976 179544976 G A NPHS2 Silent p.S8S 0.54 TCGA-DD-AACI-01 1 181685267 181685267 T A CACNA1E Splice_Site p.X439_splice 0.08 TCGA-DD-AACI-01 1 181767735 181767735 A G CACNA1E Missense_Mutation p.H2236R 0.10 tolerated(1) possibly_damaging(0.599) TCGA-DD-AACI-01 1 182811771 182811771 A G DHX9 Missense_Mutation p.R24G 0.09 deleterious(0) probably_damaging(0.914) TCGA-DD-AACI-01 1 182827944 182827944 A G DHX9 Missense_Mutation p.Q326R 0.08 tolerated(0.58) benign(0.002) TCGA-DD-AACI-01 1 185987388 185987388 A G HMCN1 Missense_Mutation p.I1792V 0.11 benign(0.222) TCGA-DD-AACI-01 1 201915422 201915422 T A LMOD1 Missense_Mutation p.D16V 0.09 probably_damaging(1) TCGA-DD-AACI-01 1 20224042 20224042 A T OTUD3 Missense_Mutation p.T165S 0.44 tolerated(0.53) benign(0.147) TCGA-DD-AACI-01 1 203734781 203734781 A T LAX1 Nonsense_Mutation p.R30* 0.10 TCGA-DD-AACI-01 1 203743958 203743958 A T LAX1 3'UTR 0.15 TCGA-DD-AACI-01 1 206905802 206905802 A T MAPKAPK2 Intron 0.09 TCGA-DD-AACI-01 1 213168331 213168331 C G ANGEL2 3'UTR 0.09 TCGA-DD-AACI-01 1 223567976 223567976 C A C1orf65 Silent p.R387R 0.62 TCGA-DD-AACI-01 1 226186994 226186994 A G SDE2 Missense_Mutation p.L7P 0.29 deleterious(0.03) benign(0.018) TCGA-DD-AACI-01 1 226340311 226340311 G A ACBD3 Missense_Mutation p.P367L 0.60 deleterious(0) benign(0.118) TCGA-DD-AACI-01 1 23235588 23235588 T C EPHB2 Missense_Mutation p.V810A 0.36 tolerated(0.13) possibly_damaging(0.543) TCGA-DD-AACI-01 1 236205357 236205357 T A NID1 Missense_Mutation p.S330C 0.13 tolerated(0.06) possibly_damaging(0.447) TCGA-DD-AACI-01 1 237729922 237729922 C T RYR2 Silent p.A1090A 0.18 TCGA-DD-AACI-01 1 237774059 237774059 T G RYR2 Intron 0.09 TCGA-DD-AACI-01 1 237972236 237972236 A T RYR2 Silent p.V4778V 0.09 TCGA-DD-AACI-01 1 240072372 240072372 C G CHRM3 Missense_Mutation p.P541A 0.08 deleterious(0) probably_damaging(1) TCGA-DD-AACI-01 1 247202710 247202710 T A ZNF670 Intron 0.08 TCGA-DD-AACI-01 1 247320351 247320351 A G ZNF124 Silent p.S129S 0.07 TCGA-DD-AACI-01 1 247921269 247921269 C A OR1C1 Missense_Mutation p.G147V 0.09 tolerated(0.67) benign(0.045) TCGA-DD-AACI-01 1 248128887 248128887 A C OR2AK2 Missense_Mutation p.D85A 0.12 deleterious(0) probably_damaging(0.94) TCGA-DD-AACI-01 1 248458294 248458294 G T OR2T12 Missense_Mutation p.A196D 0.09 deleterious(0) possibly_damaging(0.808) TCGA-DD-AACI-01 1 33794569 33794569 T C PHC2 Missense_Mutation p.H775R 0.22 tolerated(0.17) benign(0.082) TCGA-DD-AACI-01 1 35447522 35447522 T C ZMYM6NB 3'UTR 0.22 TCGA-DD-AACI-01 1 40701476 40701476 G T RLF Missense_Mutation p.G368C 0.15 deleterious(0) probably_damaging(1) TCGA-DD-AACI-01 1 62263013 62263013 C T INADL Nonsense_Mutation p.R439* 0.36 TCGA-DD-AACI-01 1 6500800 6500800 G T ESPN Missense_Mutation p.G264W 0.38 deleterious(0) probably_damaging(0.986) TCGA-DD-AACI-01 1 67855778 67855778 T C IL12RB2 Silent p.N671N 0.13 TCGA-DD-AACI-01 1 79383362 79383362 T A ELTD1 Missense_Mutation p.N569I 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-DD-AACI-01 1 85487861 85487861 G A MCOLN3 Silent p.T404T 0.39 TCGA-DD-AACI-01 1 89226006 89226006 G A PKN2 Missense_Mutation p.V151I 0.39 deleterious(0.03) probably_damaging(0.971) TCGA-DD-AACI-01 1 93131551 93131551 T G EVI5 Splice_Site p.X431_splice 0.21 TCGA-DD-AACI-01 1 9324489 9324489 T A H6PD Missense_Mutation p.I646N 0.09 deleterious(0) probably_damaging(0.943) TCGA-DD-AACI-01 1 9416188 9416188 G A SPSB1 Missense_Mutation p.V80M 0.09 tolerated(0.05) probably_damaging(0.917) TCGA-DD-AACI-01 1 95330430 95330430 A T SLC44A3 Missense_Mutation p.Y457F 0.11 tolerated(0.14) benign(0.021) TCGA-DD-AACI-01 20 19955716 19955716 T A RIN2 Silent p.P398P 0.14 TCGA-DD-AACI-01 20 21362681 21362681 G A XRN2 Silent p.Q878Q 0.14 TCGA-DD-AACI-01 20 23028430 23028430 G A THBD Missense_Mutation p.T571M 0.05 tolerated(0.29) benign(0.015) TCGA-DD-AACI-01 20 30070206 30070206 G T REM1 Silent p.R180R 0.11 TCGA-DD-AACI-01 20 30408220 30408220 A T MYLK2 Missense_Mutation p.Q115L 0.19 deleterious_low_confidence(0.02) benign(0.149) TCGA-DD-AACI-01 20 32266109 32266109 T A E2F1 Missense_Mutation p.Q208L 0.21 deleterious(0) benign(0.077) TCGA-DD-AACI-01 20 33147194 33147194 T A MAP1LC3A Missense_Mutation p.L51Q 0.13 deleterious(0) probably_damaging(0.979) TCGA-DD-AACI-01 20 37662954 37662954 A G DHX35 Silent p.Q687Q 0.24 TCGA-DD-AACI-01 20 3781408 3781408 A T CDC25B Missense_Mutation p.S160C 0.13 deleterious(0) probably_damaging(1) TCGA-DD-AACI-01 20 4163397 4163397 T A SMOX Missense_Mutation p.L424Q 0.33 deleterious(0) probably_damaging(0.993) TCGA-DD-AACI-01 20 43058295 43058295 A T HNF4A Missense_Mutation p.E472V 0.11 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DD-AACI-01 20 43566766 43566766 G C PABPC1L Missense_Mutation p.M570I 0.08 deleterious(0.03) probably_damaging(0.998) TCGA-DD-AACI-01 20 44596976 44596976 C T ZNF335 Silent p.E156E 0.07 TCGA-DD-AACI-01 20 47361579 47361579 T A PREX1 Missense_Mutation p.N133Y 0.10 deleterious(0.05) possibly_damaging(0.836) TCGA-DD-AACI-01 20 57246334 57246334 G A STX16 Missense_Mutation p.G258E 0.12 deleterious(0) benign(0.314) TCGA-DD-AACI-01 20 61827884 61827884 T C YTHDF1 3'UTR 0.28 TCGA-DD-AACI-01 20 61869278 61869278 T A BIRC7 Missense_Mutation p.F125I 0.14 deleterious(0) probably_damaging(0.986) TCGA-DD-AACI-01 21 11038989 11038989 T C BAGE2 RNA 0.05 TCGA-DD-AACI-01 21 27328044 27328044 T - APP Frame_Shift_Del p.K495Rfs*15 0.14 TCGA-DD-AACI-01 21 34625087 34625087 A G IFNAR2 Missense_Mutation p.I221V 0.20 tolerated(0.64) possibly_damaging(0.859) TCGA-DD-AACI-01 21 38308987 38308987 C T HLCS Missense_Mutation p.G253D 0.19 tolerated(0.2) benign(0.006) TCGA-DD-AACI-01 21 44845920 44845920 G A SIK1 Nonsense_Mutation p.R47* 0.25 TCGA-DD-AACI-01 22 22697775 22697775 T A IGLV9-49 Silent p.P21P 0.21 TCGA-DD-AACI-01 22 24109649 24109649 C A CHCHD10 Missense_Mutation p.G58V 0.14 deleterious(0) probably_damaging(0.999) TCGA-DD-AACI-01 22 25331229 25331229 A T TMEM211 3'UTR 0.13 TCGA-DD-AACI-01 22 32462982 32462982 A C SLC5A1 Missense_Mutation p.T90P 0.09 deleterious(0.01) probably_damaging(0.918) TCGA-DD-AACI-01 22 36876815 36876815 A - TXN2 Frame_Shift_Del p.W24Gfs*19 0.16 TCGA-DD-AACI-01 22 39069334 39069334 A G CBY1 3'UTR 0.39 TCGA-DD-AACI-01 22 39078014 39078014 G A TOMM22 Missense_Mutation p.G11R 0.20 deleterious(0.03) unknown(0) TCGA-DD-AACI-01 22 41634371 41634371 C T CHADL Silent p.L235L 0.09 TCGA-DD-AACI-01 22 46501584 46501584 A C FLJ27365 Intron 0.41 TCGA-DD-AACI-01 2 101666875 101666875 T G TBC1D8 Missense_Mutation p.Q272P 0.19 tolerated(0.08) possibly_damaging(0.898) TCGA-DD-AACI-01 2 102789169 102789169 A G IL1R1 Missense_Mutation p.R288G 0.16 tolerated(0.55) benign(0.012) TCGA-DD-AACI-01 2 109408129 109408129 A T CCDC138 Splice_Site p.X89_splice 0.16 TCGA-DD-AACI-01 2 125204373 125204373 C G CNTNAP5 Silent p.T259T 0.34 TCGA-DD-AACI-01 2 127960995 127960995 T C CYP27C1 Missense_Mutation p.E44G 0.15 tolerated(0.34) benign(0.174) TCGA-DD-AACI-01 2 128412026 128412026 C A LIMS2 Missense_Mutation p.D135Y 0.39 deleterious(0) possibly_damaging(0.805) TCGA-DD-AACI-01 2 135308172 135308172 C A TMEM163 Missense_Mutation p.A143S 0.18 tolerated(0.16) probably_damaging(0.946) TCGA-DD-AACI-01 2 1371307 1371307 G T SNTG2 3'UTR 0.32 TCGA-DD-AACI-01 2 145156008 145156008 T A ZEB2 Missense_Mutation p.S916C 0.23 deleterious(0.01) benign(0.417) TCGA-DD-AACI-01 2 149633278 149633278 C A KIF5C Missense_Mutation p.P31H 0.30 deleterious(0.03) possibly_damaging(0.788) TCGA-DD-AACI-01 2 149633279 149633279 C G KIF5C Silent p.P31P 0.30 TCGA-DD-AACI-01 2 168725708 168725708 A T B3GALT1 Silent p.I53I 0.20 TCGA-DD-AACI-01 2 171641153 171641153 T C ERICH2 Intron 0.08 TCGA-DD-AACI-01 2 175213317 175213317 T A CIR1 Missense_Mutation p.S421C 0.15 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-DD-AACI-01 2 176965409 176965409 A T HOXD12 Missense_Mutation p.Q245L 0.16 deleterious(0) probably_damaging(0.997) TCGA-DD-AACI-01 2 179424917 179424917 G T TTN Missense_Mutation p.P28648T 0.29 TCGA-DD-AACI-01 2 187713768 187713768 G C ZSWIM2 Missense_Mutation p.S30R 0.28 deleterious(0.03) benign(0.01) TCGA-DD-AACI-01 2 192862989 192862989 T A TMEFF2 Silent p.A248A 0.14 TCGA-DD-AACI-01 2 206641001 206641001 A T NRP2 Intron 0.18 TCGA-DD-AACI-01 2 207024537 207024537 C G EEF1B2 5'UTR 0.19 TCGA-DD-AACI-01 2 218925380 218925380 A T CXCR2P1 RNA 0.11 TCGA-DD-AACI-01 2 218925539 218925539 T A CXCR2P1 RNA 0.30 TCGA-DD-AACI-01 2 220156208 220156208 T A PTPRN Missense_Mutation p.I905F 0.16 deleterious(0) probably_damaging(0.996) TCGA-DD-AACI-01 2 223795465 223795465 G T ACSL3 Missense_Mutation p.G556V 0.33 deleterious(0) probably_damaging(1) TCGA-DD-AACI-01 2 224462067 224462067 A T SCG2 3'UTR 0.17 TCGA-DD-AACI-01 2 231109739 231109739 C T SP140 Missense_Mutation p.P203L 0.33 tolerated(0.26) possibly_damaging(0.449) TCGA-DD-AACI-01 2 233735018 233735018 G T C2orf82 5'UTR 0.27 TCGA-DD-AACI-01 2 234854632 234854632 C T TRPM8 Missense_Mutation p.R278W 0.11 deleterious(0) probably_damaging(0.971) TCGA-DD-AACI-01 2 235949765 235949765 A G SH3BP4 Missense_Mutation p.T118A 0.08 tolerated_low_confidence(0.23) benign(0.016) TCGA-DD-AACI-01 2 240957300 240957300 C A NDUFA10 Intron 0.20 TCGA-DD-AACI-01 2 29226472 29226472 C T FAM179A Missense_Mutation p.R252C 0.13 tolerated(0.13) benign(0) TCGA-DD-AACI-01 2 5833868 5833868 G A SOX11 Missense_Mutation p.V339M 0.09 tolerated(0.17) benign(0.295) TCGA-DD-AACI-01 2 61147765 61147765 T C REL Missense_Mutation p.Y359H 0.08 deleterious(0.05) possibly_damaging(0.646) TCGA-DD-AACI-01 2 61711207 61711207 A C XPO1 Missense_Mutation p.F848V 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-DD-AACI-01 2 73477551 73477551 C A CCT7 Silent p.V396V 0.05 TCGA-DD-AACI-01 2 74475529 74475529 T G SLC4A5 Missense_Mutation p.S580R 0.32 deleterious(0) probably_damaging(1) TCGA-DD-AACI-01 2 95943753 95943753 G T PROM2 Splice_Site p.X350_splice 0.43 TCGA-DD-AACI-01 3 126260740 126260740 G A CHST13 Silent p.V115V 0.24 TCGA-DD-AACI-01 3 13376978 13376978 T C NUP210 Silent p.E1273E 0.20 TCGA-DD-AACI-01 3 13659731 13659731 T A FBLN2 Missense_Mutation p.C629S 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AACI-01 3 156009514 156009514 C A KCNAB1 Intron 0.46 TCGA-DD-AACI-01 3 156009781 156009781 G A KCNAB1 Intron 0.11 TCGA-DD-AACI-01 3 15686472 15686472 A G BTD Missense_Mutation p.Y370C 0.17 deleterious(0.04) benign(0.014) TCGA-DD-AACI-01 3 195404686 195404686 A G SDHAP2 RNA 0.10 TCGA-DD-AACI-01 3 19575195 19575195 T C KCNH8 Silent p.H976H 0.15 TCGA-DD-AACI-01 3 195789505 195789505 C T TFRC Silent p.S472S 0.33 TCGA-DD-AACI-01 3 36778744 36778744 G A DCLK3 Silent p.H469H 0.21 TCGA-DD-AACI-01 3 37133031 37133031 T C LRRFIP2 Splice_Site p.X346_splice 0.09 TCGA-DD-AACI-01 3 42299426 42299426 A G CCK 3'UTR 0.22 TCGA-DD-AACI-01 3 45988540 45988540 T A CXCR6 Silent p.T189T 0.19 TCGA-DD-AACI-01 3 47378035 47378035 G T KLHL18 Silent p.L303L 0.35 TCGA-DD-AACI-01 3 49928638 49928638 C A MST1R Silent p.R1212R 0.17 TCGA-DD-AACI-01 3 51266174 51266174 A G DOCK3 Missense_Mutation p.N577S 0.22 tolerated(0.18) benign(0.068) TCGA-DD-AACI-01 3 51746843 51746843 T A GRM2 Missense_Mutation p.F269I 0.26 deleterious(0) probably_damaging(1) TCGA-DD-AACI-01 3 6903010 6903010 G A GRM7 5'UTR 0.21 TCGA-DD-AACI-01 3 73432500 73432500 A T PDZRN3 3'UTR 0.22 TCGA-DD-AACI-01 3 97852435 97852435 A T OR5H1 Silent p.T298T 0.14 TCGA-DD-AACI-01 4 104066278 104066278 T A CENPE Nonsense_Mutation p.K1596* 0.17 TCGA-DD-AACI-01 4 106157691 106157691 C T TET2 Silent p.H864H 0.24 TCGA-DD-AACI-01 4 123663523 123663523 C T BBS12 Missense_Mutation p.P159L 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-DD-AACI-01 4 146770559 146770559 T C ZNF827 Silent p.P712P 0.28 TCGA-DD-AACI-01 4 146770637 146770637 G C ZNF827 Silent p.V686V 0.37 TCGA-DD-AACI-01 4 152203321 152203321 T - PRSS48 Frame_Shift_Del p.Y79* 0.14 TCGA-DD-AACI-01 4 156289851 156289851 T A MAP9 Missense_Mutation p.T199S 0.24 tolerated(0.33) benign(0.017) TCGA-DD-AACI-01 4 2233496 2233496 T C HAUS3 3'UTR 0.18 TCGA-DD-AACI-01 4 23826123 23826123 T C PPARGC1A Missense_Mutation p.T256A 0.15 tolerated(0.06) benign(0.268) TCGA-DD-AACI-01 4 25836852 25836852 T A SEL1L3 Missense_Mutation p.E276V 0.21 deleterious(0) probably_damaging(0.999) TCGA-DD-AACI-01 4 39304373 39304373 C T RFC1 Missense_Mutation p.R776Q 0.21 deleterious(0.01) probably_damaging(0.957) TCGA-DD-AACI-01 4 47900865 47900865 T A NFXL1 Missense_Mutation p.Q333L 0.23 tolerated(0.3) benign(0.001) TCGA-DD-AACI-01 4 62679600 62679600 T A LPHN3 Silent p.S423S 0.23 TCGA-DD-AACI-01 4 656887 656887 A T PDE6B Splice_Site p.X611_splice 0.09 TCGA-DD-AACI-01 4 69198561 69198561 T C YTHDC1 Silent p.S326S 0.25 TCGA-DD-AACI-01 4 88534079 88534079 T G DSPP Missense_Mutation p.S247R 0.35 probably_damaging(0.999) TCGA-DD-AACI-01 4 88534092 88534092 G C DSPP Missense_Mutation p.D252H 0.38 probably_damaging(0.98) TCGA-DD-AACI-01 4 9828041 9828041 T C SLC2A9 Missense_Mutation p.K535E 0.16 tolerated(0.12) benign(0.007) TCGA-DD-AACI-01 5 102326046 102326046 T C PAM Silent p.A518A 0.10 TCGA-DD-AACI-01 5 102432263 102432263 T A GIN1 Nonsense_Mutation p.R426* 0.16 TCGA-DD-AACI-01 5 109954157 109954157 T A TMEM232 Missense_Mutation p.H292L 0.19 tolerated(0.4) possibly_damaging(0.57) TCGA-DD-AACI-01 5 112179022 112179022 A T APC Silent p.S2577S 0.12 TCGA-DD-AACI-01 5 112363149 112363149 C G MCC Missense_Mutation p.K970N 0.41 deleterious(0.05) probably_damaging(0.985) TCGA-DD-AACI-01 5 121786551 121786551 T G SNCAIP Missense_Mutation p.L670R 0.08 deleterious(0) probably_damaging(0.999) TCGA-DD-AACI-01 5 125903957 125903957 T A ALDH7A1 Missense_Mutation p.R289W 0.12 deleterious(0) probably_damaging(1) TCGA-DD-AACI-01 5 126141268 126141268 A G LMNB1 Silent p.E174E 0.07 TCGA-DD-AACI-01 5 129019947 129019947 C T ADAMTS19 Silent p.C927C 0.11 TCGA-DD-AACI-01 5 131879078 131879078 T A IL5 Missense_Mutation p.K31N 0.14 tolerated(0.27) benign(0.399) TCGA-DD-AACI-01 5 133292672 133292672 G C C5orf15 Missense_Mutation p.L226V 0.15 deleterious(0) possibly_damaging(0.904) TCGA-DD-AACI-01 5 134210212 134210212 G T TXNDC15 Missense_Mutation p.G32V 0.31 deleterious_low_confidence(0.02) benign(0.231) TCGA-DD-AACI-01 5 140257026 140257026 C T PCDHA12 Missense_Mutation p.P657S 0.07 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-DD-AACI-01 5 140517420 140517420 G A PCDHB5 3'UTR 0.14 TCGA-DD-AACI-01 5 140562781 140562781 A T PCDHB16 Missense_Mutation p.D216V 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-DD-AACI-01 5 140564589 140564589 A T PCDHB16 3'UTR 0.11 TCGA-DD-AACI-01 5 140589743 140589743 A G PCDHB12 Missense_Mutation p.T422A 0.19 deleterious_low_confidence(0.01) benign(0.443) TCGA-DD-AACI-01 5 149933100 149933100 G A NDST1 3'UTR 0.38 TCGA-DD-AACI-01 5 149997966 149997966 C G SYNPO Missense_Mutation p.P13A 0.16 tolerated_low_confidence(0.73) unknown(0) TCGA-DD-AACI-01 5 149997969 149997969 A T SYNPO Missense_Mutation p.S14C 0.16 deleterious_low_confidence(0) possibly_damaging(0.874) TCGA-DD-AACI-01 5 150925156 150925156 G T FAT2 Missense_Mutation p.D1844E 0.30 probably_damaging(1) TCGA-DD-AACI-01 5 173372134 173372134 A G CPEB4 Missense_Mutation p.I483V 0.17 tolerated(0.11) possibly_damaging(0.555) TCGA-DD-AACI-01 5 176738964 176738964 C T MXD3 5'UTR 0.15 TCGA-DD-AACI-01 5 180626894 180626894 T A TRIM7 Missense_Mutation p.Q269L 0.09 deleterious(0) benign(0.205) TCGA-DD-AACI-01 5 19591188 19591188 T C CDH18 Missense_Mutation p.E326G 0.14 deleterious(0) probably_damaging(0.973) TCGA-DD-AACI-01 5 32712409 32712409 G A NPR3 Missense_Mutation p.R176H 0.19 deleterious(0) probably_damaging(1) TCGA-DD-AACI-01 5 37370982 37370982 T C NUP155 Missense_Mutation p.Q33R 0.13 tolerated(0.34) benign(0.093) TCGA-DD-AACI-01 5 39341729 39341729 C T C9 Missense_Mutation p.R86Q 0.14 tolerated(1) benign(0.016) TCGA-DD-AACI-01 5 43446346 43446346 T A C5orf28 Missense_Mutation p.H209L 0.13 deleterious(0) benign(0.156) TCGA-DD-AACI-01 5 71618053 71618053 A G PTCD2 Missense_Mutation p.K61R 0.10 tolerated(0.22) benign(0.037) TCGA-DD-AACI-01 5 79025753 79025753 A G CMYA5 Missense_Mutation p.M389V 0.13 benign(0) TCGA-DD-AACI-01 5 96478229 96478229 G A LIX1 Missense_Mutation p.H18Y 0.16 tolerated(0.07) benign(0.039) TCGA-DD-AACI-01 6 109477240 109477240 A G CEP57L1 Intron 0.33 TCGA-DD-AACI-01 6 117869448 117869448 A T DCBLD1 Intron 0.27 TCGA-DD-AACI-01 6 119669665 119669665 T A MAN1A1 Missense_Mutation p.D189V 0.23 deleterious(0) benign(0.195) TCGA-DD-AACI-01 6 1314585 1314585 A T FOXQ1 3'UTR 0.18 TCGA-DD-AACI-01 6 132189188 132189188 A T ENPP1 Missense_Mutation p.M399L 0.23 tolerated(0.09) benign(0.006) TCGA-DD-AACI-01 6 133767789 133767789 A T EYA4 Silent p.L35L 0.20 TCGA-DD-AACI-01 6 136693743 136693743 T C MAP7 Missense_Mutation p.M280V 0.54 tolerated(0.5) benign(0.269) TCGA-DD-AACI-01 6 152415601 152415601 A G ESR1 Missense_Mutation p.D484G 0.24 deleterious(0) probably_damaging(0.998) TCGA-DD-AACI-01 6 25926067 25926067 T C SLC17A2 5'UTR 0.34 TCGA-DD-AACI-01 6 28227649 28227649 G T NKAPL Missense_Mutation p.S167I 0.12 deleterious(0.03) unknown(0) TCGA-DD-AACI-01 6 29141609 29141609 A C OR2J2 Missense_Mutation p.N66T 0.15 deleterious(0) probably_damaging(0.944) TCGA-DD-AACI-01 6 30570416 30570416 T A PPP1R10 Silent p.P670P 0.18 TCGA-DD-AACI-01 6 30856421 30856421 A T DDR1 Intron 0.13 TCGA-DD-AACI-01 6 32065840 32065840 G A TNXB Missense_Mutation p.H46Y 0.23 benign(0.099) TCGA-DD-AACI-01 6 33144072 33144072 G A COL11A2 Silent p.D640D 0.11 TCGA-DD-AACI-01 6 35051203 35051203 G C ANKS1A Missense_Mutation p.E973Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-DD-AACI-01 6 43160940 43160940 G A CUL9 Silent p.G794G 0.38 TCGA-DD-AACI-01 6 43182826 43182826 G T CUL9 Missense_Mutation p.A1900S 0.05 tolerated(0.21) probably_damaging(0.914) TCGA-DD-AACI-01 6 43182827 43182827 C T CUL9 Missense_Mutation p.A1900V 0.05 deleterious(0.05) possibly_damaging(0.825) TCGA-DD-AACI-01 6 43269998 43269998 C T SLC22A7 Silent p.N374N 0.12 TCGA-DD-AACI-01 6 43272478 43272478 A T SLC22A7 3'UTR 0.09 TCGA-DD-AACI-01 6 44250186 44250186 A T TCTE1 Silent p.I319I 0.08 TCGA-DD-AACI-01 6 56380272 56380272 T G DST Silent p.L3561L 0.09 TCGA-DD-AACI-01 6 65300985 65300985 A T EYS Missense_Mutation p.I1592K 0.19 deleterious_low_confidence(0) benign(0.231) TCGA-DD-AACI-01 6 7301679 7301679 T G SSR1 Missense_Mutation p.N136T 0.13 deleterious(0) probably_damaging(0.993) TCGA-DD-AACI-01 6 74079023 74079023 G A OOEP Silent p.V92V 0.49 TCGA-DD-AACI-01 6 75875410 75875410 A G COL12A1 Silent p.V932V 0.18 TCGA-DD-AACI-01 6 99851737 99851737 T A PNISR Missense_Mutation p.Q375L 0.26 tolerated(0.11) possibly_damaging(0.465) TCGA-DD-AACI-01 6 99854007 99854007 T C PNISR Missense_Mutation p.E301G 0.27 deleterious(0.01) possibly_damaging(0.843) TCGA-DD-AACI-01 7 100680019 100680019 T C MUC17 Silent p.I1774I 0.22 TCGA-DD-AACI-01 7 100680551 100680551 G A MUC17 Missense_Mutation p.D1952N 0.26 unknown(0) TCGA-DD-AACI-01 7 102944347 102944347 A T PMPCB Missense_Mutation p.E172D 0.10 deleterious(0.03) benign(0.018) TCGA-DD-AACI-01 7 105752947 105752947 T A SYPL1 Missense_Mutation p.Q10L 0.24 tolerated_low_confidence(0.73) benign(0.034) TCGA-DD-AACI-01 7 116862960 116862960 A T ST7 Nonsense_Mutation p.K562* 0.12 TCGA-DD-AACI-01 7 117361141 117361141 A G CTTNBP2 Silent p.N1497N 0.33 TCGA-DD-AACI-01 7 117867992 117867992 C T ANKRD7 Intron 0.30 TCGA-DD-AACI-01 7 128486380 128486380 T A FLNC Nonsense_Mutation p.Y1330* 0.15 TCGA-DD-AACI-01 7 128497184 128497184 A T FLNC Missense_Mutation p.E2525V 0.12 tolerated(0.06) possibly_damaging(0.723) TCGA-DD-AACI-01 7 138566238 138566238 C T KIAA1549 Silent p.A1375A 0.24 TCGA-DD-AACI-01 7 141424074 141424074 A T WEE2 Missense_Mutation p.E407V 0.19 deleterious(0) probably_damaging(0.99) TCGA-DD-AACI-01 7 141736006 141736006 C A MGAM Missense_Mutation p.P666H 0.30 deleterious(0) benign(0.363) TCGA-DD-AACI-01 7 150325135 150325135 G T GIMAP6 Missense_Mutation p.A184D 0.13 tolerated(0.69) benign(0.015) TCGA-DD-AACI-01 7 150389814 150389814 A T GIMAP2 Missense_Mutation p.H147L 0.26 deleterious(0) possibly_damaging(0.555) TCGA-DD-AACI-01 7 150864157 150864157 A G GBX1 Missense_Mutation p.V160A 0.12 tolerated(0.76) benign(0) TCGA-DD-AACI-01 7 154760285 154760285 C G PAXIP1 Missense_Mutation p.Q542H 0.09 tolerated(0.13) unknown(0) TCGA-DD-AACI-01 7 157160104 157160104 C T DNAJB6 Silent p.F91F 0.21 TCGA-DD-AACI-01 7 28996188 28996188 T A AC005013.5 5'Flank 0.15 TCGA-DD-AACI-01 7 41729994 41729994 G C INHBA Missense_Mutation p.Q179E 0.11 tolerated(0.7) benign(0.016) TCGA-DD-AACI-01 7 41730010 41730010 G A INHBA Silent p.I173I 0.11 TCGA-DD-AACI-01 7 43992175 43992175 T C UBE2D4 Intron 0.31 TCGA-DD-AACI-01 7 50563117 50563117 T A DDC Splice_Site p.X293_splice 0.15 TCGA-DD-AACI-01 7 5413683 5413683 T C TNRC18 Intron 0.09 TCGA-DD-AACI-01 7 55248998 55248999 - TGGCCAGCG EGFR In_Frame_Ins p.A767_V769dup 0.13 TCGA-DD-AACI-01 7 6080784 6080784 T A EIF2AK1 Silent p.P286P 0.14 TCGA-DD-AACI-01 7 63726363 63726363 A T ZNF679 Missense_Mutation p.S118C 0.13 tolerated(1) benign(0) TCGA-DD-AACI-01 7 73118665 73118665 A G STX1A Intron 0.08 TCGA-DD-AACI-01 7 82582621 82582621 C A PCLO Missense_Mutation p.A2550S 0.12 unknown(0) TCGA-DD-AACI-01 7 82595525 82595525 T A PCLO Missense_Mutation p.Q1193H 0.29 unknown(0) TCGA-DD-AACI-01 7 82764329 82764329 A T PCLO Missense_Mutation p.V846D 0.08 unknown(0) TCGA-DD-AACI-01 7 83610729 83610729 G A SEMA3A Silent p.Y520Y 0.05 TCGA-DD-AACI-01 7 92731091 92731091 C G SAMD9 Missense_Mutation p.W1440C 0.19 deleterious(0) probably_damaging(0.999) TCGA-DD-AACI-01 7 93113280 93113280 C T CALCR Intron 0.10 TCGA-DD-AACI-01 7 94285310 94285310 A C SGCE Missense_Mutation p.L34W 0.32 deleterious(0.03) benign(0.001) TCGA-DD-AACI-01 7 94296482 94296482 C A PEG10 3'UTR 0.16 TCGA-DD-AACI-01 7 96650106 96650106 A T DLX5 Missense_Mutation p.L271Q 0.11 deleterious(0) probably_damaging(0.979) TCGA-DD-AACI-01 8 101178179 101178179 A G SPAG1 Missense_Mutation p.E93G 0.12 deleterious(0.02) benign(0.367) TCGA-DD-AACI-01 8 101715478 101715478 T C PABPC1 3'UTR 0.12 TCGA-DD-AACI-01 8 101733713 101733713 C G PABPC1 Silent p.P33P 0.43 TCGA-DD-AACI-01 8 113655796 113655796 T A CSMD3 Intron 0.08 TCGA-DD-AACI-01 8 118834756 118834756 T A EXT1 Silent p.L455L 0.07 TCGA-DD-AACI-01 8 131916177 131916177 A G ADCY8 Silent p.T584T 0.20 TCGA-DD-AACI-01 8 133894143 133894143 A C TG Missense_Mutation p.Q225P 0.11 deleterious(0) benign(0.127) TCGA-DD-AACI-01 8 139727943 139727943 T C COL22A1 Silent p.K833K 0.06 TCGA-DD-AACI-01 8 142160957 142160957 A G DENND3 Missense_Mutation p.I174V 0.40 tolerated(0.37) benign(0.035) TCGA-DD-AACI-01 8 142221937 142221937 A G SLC45A4 Intron 0.09 TCGA-DD-AACI-01 8 146076399 146076399 A C COMMD5 Missense_Mutation p.F109V 0.20 deleterious(0) probably_damaging(0.974) TCGA-DD-AACI-01 8 24259501 24259501 A G ADAMDEC1 Missense_Mutation p.K406E 0.12 tolerated(0.16) benign(0.328) TCGA-DD-AACI-01 8 3087715 3087715 G - CSMD1 Frame_Shift_Del p.Q1398Kfs*37 0.09 TCGA-DD-AACI-01 8 36642022 36642022 T C KCNU1 Missense_Mutation p.F32L 0.19 tolerated(1) benign(0.002) TCGA-DD-AACI-01 8 38029501 38029501 T C LSM1 Missense_Mutation p.R33G 0.12 deleterious(0) probably_damaging(0.956) TCGA-DD-AACI-01 8 48855847 48855847 G C PRKDC Silent p.V296V 0.13 TCGA-DD-AACI-01 8 6735387 6735387 G A DEFB1 5'UTR 0.24 TCGA-DD-AACI-01 8 71520468 71520468 G A TRAM1 5'UTR 0.45 TCGA-DD-AACI-01 8 88365869 88365869 A G CNBD1 Silent p.R386R 0.06 TCGA-DD-AACI-01 8 99033508 99033508 A C MATN2 Missense_Mutation p.K632T 0.11 tolerated(0.31) benign(0.129) TCGA-DD-AACI-01 9 1056607 1056607 A G DMRT2 Silent p.R340R 0.05 TCGA-DD-AACI-01 9 107360745 107360745 T A OR13C5 Missense_Mutation p.N317I 0.19 tolerated(0.14) benign(0.043) TCGA-DD-AACI-01 9 123789473 123789473 T A C5 Nonsense_Mutation p.K280* 0.14 TCGA-DD-AACI-01 9 125316382 125316382 A C OR1N2 Silent p.R312R 0.10 TCGA-DD-AACI-01 9 127262932 127262932 G A NR5A1 Missense_Mutation p.R103W 0.19 deleterious(0) probably_damaging(0.999) TCGA-DD-AACI-01 9 134026017 134026017 G T NUP214 Missense_Mutation p.Q714H 0.14 possibly_damaging(0.843) TCGA-DD-AACI-01 9 137023062 137023062 T C WDR5 Missense_Mutation p.S318P 0.20 deleterious(0) possibly_damaging(0.807) TCGA-DD-AACI-01 9 139324161 139324161 C G INPP5E Missense_Mutation p.S634T 0.10 tolerated(0.25) benign(0.002) TCGA-DD-AACI-01 9 21217203 21217203 A G IFNA16 Silent p.N34N 0.21 TCGA-DD-AACI-01 9 33443076 33443076 A C AQP3 Intron 0.09 TCGA-DD-AACI-01 9 34311028 34311028 T A KIF24 Missense_Mutation p.N106I 0.18 tolerated(0.06) benign(0.09) TCGA-DD-AACI-01 9 34977626 34977626 A T KIAA1045 Missense_Mutation p.E365V 0.19 tolerated(0.19) possibly_damaging(0.51) TCGA-DD-AACI-01 9 35043491 35043491 A T C9orf131 Missense_Mutation p.R289W 0.23 deleterious(0) possibly_damaging(0.702) TCGA-DD-AACI-01 9 35809525 35809525 A G NPR2 3'UTR 0.19 TCGA-DD-AACI-01 9 4701968 4701968 T G CDC37L1 Silent p.V284V 0.11 TCGA-DD-AACI-01 9 5069060 5069060 A G JAK2 Silent p.T455T 0.18 TCGA-DD-AACI-01 9 77502803 77502803 C A TRPM6 5'UTR 0.18 TCGA-DD-AACI-01 9 79320733 79320733 A G PRUNE2 Missense_Mutation p.F2153L 0.23 tolerated(0.88) benign(0.006) TCGA-DD-AACI-01 9 8404601 8404601 T A PTPRD Silent p.P1382P 0.22 TCGA-DD-AACI-01 9 95599719 95599719 T A ANKRD19P RNA 0.24 TCGA-DD-AACI-01 9 95992093 95992093 A T WNK2 Missense_Mutation p.K266M 0.17 unknown(0) TCGA-DD-AACI-01 9 96031166 96031166 G A WNK2 Missense_Mutation p.A1360T 0.14 unknown(0) TCGA-DD-AACI-01 X 101823192 101823192 A T NXF4 RNA 0.40 TCGA-DD-AACI-01 X 106312542 106312542 T A RBM41 Missense_Mutation p.I340F 0.31 tolerated(0.06) possibly_damaging(0.725) TCGA-DD-AACI-01 X 107975901 107975901 G T IRS4 Missense_Mutation p.P1225H 0.52 deleterious_low_confidence(0.03) unknown(0) TCGA-DD-AACI-01 X 115304969 115304969 T C AGTR2 3'UTR 0.15 TCGA-DD-AACI-01 X 118767433 118767433 T A SEPT6 Nonsense_Mutation p.K327* 0.06 TCGA-DD-AACI-01 X 122755374 122755374 T A THOC2 Nonsense_Mutation p.K1284* 0.14 TCGA-DD-AACI-01 X 122755376 122755376 T G THOC2 Missense_Mutation p.E1283A 0.15 tolerated(0.08) benign(0.219) TCGA-DD-AACI-01 X 125299819 125299819 G A DCAF12L2 Missense_Mutation p.A30V 0.15 deleterious(0.01) benign(0.085) TCGA-DD-AACI-01 X 125955396 125955396 C T CXorf64 Missense_Mutation p.L259F 0.79 tolerated(0.14) benign(0.1) TCGA-DD-AACI-01 X 129059021 129059021 A T UTP14A Missense_Mutation p.L533F 0.14 tolerated(0.07) possibly_damaging(0.707) TCGA-DD-AACI-01 X 131513436 131513436 T C MBNL3 3'UTR 0.21 TCGA-DD-AACI-01 X 132161579 132161579 A G USP26 Silent p.L224L 0.24 TCGA-DD-AACI-01 X 135291566 135291566 A G FHL1 Missense_Mutation p.R285G 0.24 deleterious_low_confidence(0.02) benign(0.016) TCGA-DD-AACI-01 X 135570516 135570516 T A BRS3 Silent p.V81V 0.21 TCGA-DD-AACI-01 X 140335688 140335688 C T SPANXC Missense_Mutation p.E86K 0.14 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-DD-AACI-01 X 144910420 144910420 T A TMEM257 3'UTR 0.14 TCGA-DD-AACI-01 X 155007578 155007578 A C SPRY3 3'UTR 0.13 TCGA-DD-AACI-01 X 15845424 15845424 G A AP1S2 3'UTR 0.33 TCGA-DD-AACI-01 X 22231054 22231054 T C PHEX Missense_Mutation p.F560S 0.32 deleterious(0) possibly_damaging(0.691) TCGA-DD-AACI-01 X 45060101 45060101 T C CXorf36 5'UTR 0.27 TCGA-DD-AACI-01 X 48935320 48935320 T A WDR45 Nonsense_Mutation p.K73* 0.30 TCGA-DD-AACI-01 X 55052401 55052401 G A ALAS2 Silent p.C11C 0.44 TCGA-DD-AACI-01 X 56295811 56295811 T A KLF8 Missense_Mutation p.V216E 0.29 deleterious(0) probably_damaging(0.98) TCGA-DD-AACJ-01 10 101590535 101590535 A G ABCC2 Missense_Mutation p.N937S 0.51 tolerated(0.93) benign(0.001) TCGA-DD-AACJ-01 10 102054310 102054310 G A PKD2L1 Silent p.F547F 0.38 TCGA-DD-AACJ-01 10 104436596 104436596 T - ARL3 3'UTR 0.45 TCGA-DD-AACJ-01 10 21784453 21784453 G A CASC10 3'UTR 0.44 TCGA-DD-AACJ-01 10 27702854 27702854 C T PTCHD3 Missense_Mutation p.R109K 0.33 tolerated(0.93) benign(0.001) TCGA-DD-AACJ-01 10 50085112 50085112 G A WDFY4 Silent p.P2345P 0.39 TCGA-DD-AACJ-01 10 73050696 73050696 C T UNC5B Missense_Mutation p.A375V 0.46 deleterious(0.04) probably_damaging(0.999) TCGA-DD-AACJ-01 10 97516040 97516040 T A ENTPD1 Intron 0.46 TCGA-DD-AACJ-01 10 97626147 97626147 C T ENTPD1 3'UTR 0.44 TCGA-DD-AACJ-01 11 108124684 108124684 C G ATM Missense_Mutation p.S681C 0.37 deleterious(0.02) possibly_damaging(0.469) TCGA-DD-AACJ-01 11 118984970 118984970 G A C2CD2L Missense_Mutation p.E603K 0.47 deleterious(0.05) possibly_damaging(0.696) TCGA-DD-AACJ-01 11 119243702 119243707 GGGGTC - USP2 In_Frame_Del p.D162_P163del 0.36 TCGA-DD-AACJ-01 11 123477353 123477353 G C GRAMD1B Missense_Mutation p.G311R 0.34 tolerated(0.51) benign(0.001) TCGA-DD-AACJ-01 11 125546342 125546342 A G ACRV1 Silent p.Y195Y 0.46 TCGA-DD-AACJ-01 11 133792580 133792580 G T IGSF9B Missense_Mutation p.P722H 0.54 deleterious(0.01) probably_damaging(1) TCGA-DD-AACJ-01 11 134018452 134018452 C - JAM3 Frame_Shift_Del p.N241Kfs*18 0.32 TCGA-DD-AACJ-01 11 16863238 16863238 T C PLEKHA7 Missense_Mutation p.Y243C 0.43 deleterious(0.02) benign(0.003) TCGA-DD-AACJ-01 11 43340327 43340327 C T API5 Silent p.D69D 0.53 TCGA-DD-AACJ-01 11 72946720 72946721 - T P2RY2 3'UTR 0.27 TCGA-DD-AACJ-01 11 74687909 74687909 G A SPCS2 Missense_Mutation p.D168N 0.35 tolerated(0.05) possibly_damaging(0.519) TCGA-DD-AACJ-01 11 8950997 8950997 G A C11orf16 Missense_Mutation p.A84V 0.38 tolerated(0.1) benign(0.281) TCGA-DD-AACJ-01 12 14765959 14765959 C G GUCY2C 3'UTR 0.36 TCGA-DD-AACJ-01 12 29460716 29460716 T C FAR2 Missense_Mutation p.I224T 0.44 tolerated(0.09) benign(0.243) TCGA-DD-AACJ-01 12 57642930 57642930 C T STAC3 Silent p.E76E 0.45 TCGA-DD-AACJ-01 12 64813856 64813856 C T XPOT Missense_Mutation p.R166C 0.42 deleterious(0.04) possibly_damaging(0.809) TCGA-DD-AACJ-01 13 41705671 41705671 G C KBTBD6 Missense_Mutation p.S326C 0.39 tolerated(0.08) benign(0.008) TCGA-DD-AACJ-01 13 99100633 99100633 A G FARP1 3'UTR 0.40 TCGA-DD-AACJ-01 14 20851711 20851711 G - TEP1 Frame_Shift_Del p.A1268Vfs*4 0.25 TCGA-DD-AACJ-01 14 31576900 31576900 A G HECTD1 Missense_Mutation p.L2164S 0.43 deleterious(0.05) benign(0.025) TCGA-DD-AACJ-01 14 50360727 50360727 C T ARF6 Silent p.A91A 0.47 TCGA-DD-AACJ-01 14 73678608 73678608 G C PSEN1 Missense_Mutation p.E363Q 0.37 tolerated(0.45) benign(0.046) TCGA-DD-AACJ-01 14 75360084 75360084 T C DLST Missense_Mutation p.L210P 0.29 tolerated(0.35) benign(0) TCGA-DD-AACJ-01 14 92488109 92488109 C T TRIP11 Missense_Mutation p.A127T 0.25 tolerated(0.07) benign(0.034) TCGA-DD-AACJ-01 15 26866602 26866602 G A GABRB3 Missense_Mutation p.T107M 0.35 deleterious(0) probably_damaging(1) TCGA-DD-AACJ-01 15 62362686 62362686 A T C2CD4A 3'UTR 0.47 TCGA-DD-AACJ-01 15 72244235 72244235 G T MYO9A Missense_Mutation p.H729N 0.09 tolerated(0.25) benign(0.005) TCGA-DD-AACJ-01 15 72433113 72433113 T G SENP8 3'UTR 0.47 TCGA-DD-AACJ-01 15 90171679 90171679 T A KIF7 Missense_Mutation p.M1335L 0.40 tolerated(1) benign(0.001) TCGA-DD-AACJ-01 16 24583618 24583618 A G RBBP6 Missense_Mutation p.H1744R 0.46 deleterious_low_confidence(0) unknown(0) TCGA-DD-AACJ-01 16 50707378 50707378 C T SNX20 Missense_Mutation p.R297Q 0.44 tolerated(0.34) benign(0.013) TCGA-DD-AACJ-01 16 71961659 71961659 A C IST1 Missense_Mutation p.E361D 0.52 tolerated(0.94) benign(0.009) TCGA-DD-AACJ-01 16 72110680 72110680 C T HPR Silent p.Y249Y 0.38 TCGA-DD-AACJ-01 16 88495895 88495895 G A ZNF469 Missense_Mutation p.A673T 0.08 benign(0.001) TCGA-DD-AACJ-01 17 18566384 18566384 C A ZNF286B Silent p.R145R 0.73 TCGA-DD-AACJ-01 17 26817351 26817351 T A SLC13A2 Missense_Mutation p.S86R 0.18 tolerated(0.5) benign(0.164) TCGA-DD-AACJ-01 17 33849752 33849752 G T SLFN12L 5'UTR 0.18 TCGA-DD-AACJ-01 17 38975272 38975272 G T KRT10 Silent p.G505G 0.30 TCGA-DD-AACJ-01 17 39034466 39034466 A G KRT20 Missense_Mutation p.L357P 0.16 deleterious(0) probably_damaging(0.995) TCGA-DD-AACJ-01 17 44144979 44144979 T C KANSL1 Missense_Mutation p.I530V 0.19 tolerated(0.61) benign(0.003) TCGA-DD-AACJ-01 17 49247317 49247317 T C NME1-NME2 Missense_Mutation p.V198A 0.17 tolerated(0.24) possibly_damaging(0.798) TCGA-DD-AACJ-01 17 5086035 5086035 T C ZNF594 Missense_Mutation p.H506R 0.08 deleterious(0.01) probably_damaging(0.99) TCGA-DD-AACJ-01 17 62207472 62207472 G C ERN1 5'UTR 0.88 TCGA-DD-AACJ-01 17 62796533 62796533 C T PLEKHM1P RNA 0.73 TCGA-DD-AACJ-01 17 72916457 72916457 G A USH1G Silent p.H158H 0.15 TCGA-DD-AACJ-01 17 7329876 7329876 A G C17orf74 Missense_Mutation p.D189G 0.67 deleterious(0.01) possibly_damaging(0.908) TCGA-DD-AACJ-01 17 79495432 79495432 G T FSCN2 5'Flank 0.17 TCGA-DD-AACJ-01 17 8272535 8272535 C A KRBA2 Missense_Mutation p.D466Y 0.68 deleterious(0) probably_damaging(0.99) TCGA-DD-AACJ-01 18 19408808 19408811 TCTA - MIB1 Intron 0.50 TCGA-DD-AACJ-01 18 32825455 32825455 T A ZNF397 Silent p.A262A 0.23 TCGA-DD-AACJ-01 18 7008502 7008502 C A LAMA1 Silent p.V1369V 0.45 TCGA-DD-AACJ-01 19 13041077 13041077 C T FARSA Missense_Mutation p.E155K 0.08 tolerated(0.83) benign(0.005) TCGA-DD-AACJ-01 19 13260405 13260405 T C STX10 Missense_Mutation p.I70V 0.37 deleterious(0.05) benign(0.057) TCGA-DD-AACJ-01 19 18284678 18284678 C - IFI30 Frame_Shift_Del p.L10Cfs*23 0.36 TCGA-DD-AACJ-01 19 21909720 21909720 G A ZNF100 Missense_Mutation p.A465V 0.44 deleterious(0.04) possibly_damaging(0.874) TCGA-DD-AACJ-01 19 33572045 33572045 G A GPATCH1 5'UTR 0.38 TCGA-DD-AACJ-01 19 37676473 37676473 G A ZNF585B Missense_Mutation p.H656Y 0.40 deleterious(0) probably_damaging(0.998) TCGA-DD-AACJ-01 19 44590539 44590539 A G ZNF284 Missense_Mutation p.N303S 0.38 tolerated(0.1) possibly_damaging(0.659) TCGA-DD-AACJ-01 19 46271365 46271365 G A SIX5 Silent p.S246S 0.37 TCGA-DD-AACJ-01 19 46271366 46271366 C A SIX5 Missense_Mutation p.S246I 0.37 deleterious(0) possibly_damaging(0.882) TCGA-DD-AACJ-01 19 474840 474840 C A ODF3L2 5'UTR 0.44 TCGA-DD-AACJ-01 19 51172194 51172194 G T SHANK1 Missense_Mutation p.A1008D 0.50 possibly_damaging(0.665) TCGA-DD-AACJ-01 19 52888381 52888381 A G ZNF880 Silent p.G516G 0.36 TCGA-DD-AACJ-01 19 53056624 53056624 T A ZNF808 Missense_Mutation p.I152N 0.48 deleterious(0.01) benign(0.319) TCGA-DD-AACJ-01 19 6707102 6707102 G C C3 Missense_Mutation p.L744V 0.35 deleterious(0.05) benign(0.391) TCGA-DD-AACJ-01 19 813158 813158 G A LPPR3 Silent p.A551A 0.20 TCGA-DD-AACJ-01 19 8953470 8953470 T C MBD3L1 Missense_Mutation p.V39A 0.45 deleterious(0) probably_damaging(0.994) TCGA-DD-AACJ-01 1 155036243 155036243 T C EFNA4 5'UTR 0.49 TCGA-DD-AACJ-01 1 158669714 158669714 G A OR6K2 Silent p.V243V 0.12 TCGA-DD-AACJ-01 1 158735540 158735540 C T OR6N1 Silent p.L311L 0.17 TCGA-DD-AACJ-01 1 168066166 168066166 C T GPR161 Missense_Mutation p.V247I 0.11 tolerated(0.17) benign(0.06) TCGA-DD-AACJ-01 1 176762739 176762739 C T PAPPA2 Silent p.P1688P 0.66 TCGA-DD-AACJ-01 1 198608195 198608195 A G PTPRC 5'UTR 0.30 TCGA-DD-AACJ-01 1 202702884 202702884 G A KDM5B Missense_Mutation p.P1185L 0.22 tolerated(0.11) probably_damaging(0.987) TCGA-DD-AACJ-01 1 222817733 222817733 C G MIA3 Intron 0.15 TCGA-DD-AACJ-01 1 235955183 235955183 T C LYST Missense_Mutation p.I1453M 0.46 deleterious(0.01) benign(0.242) TCGA-DD-AACJ-01 1 247025382 247025382 G A AHCTF1 Missense_Mutation p.S1214F 0.08 deleterious(0) probably_damaging(0.931) TCGA-DD-AACJ-01 1 248112256 248112256 A G OR2L8 Missense_Mutation p.I33V 0.45 tolerated(0.36) benign(0.025) TCGA-DD-AACJ-01 1 41237077 41237077 T A NFYC 3'Flank 0.53 TCGA-DD-AACJ-01 1 53458965 53458965 C T SCP2 Intron 0.10 TCGA-DD-AACJ-01 20 30070268 30070268 G A REM1 Missense_Mutation p.R201H 0.34 deleterious(0) probably_damaging(0.993) TCGA-DD-AACJ-01 20 4202607 4202607 G A ADRA1D Missense_Mutation p.R428C 0.40 deleterious(0.01) benign(0.358) TCGA-DD-AACJ-01 20 47605200 47605200 G A ARFGEF2 Splice_Site p.X845_splice 0.35 TCGA-DD-AACJ-01 21 46020913 46020913 T C KRTAP10-7 Missense_Mutation p.V131A 0.38 tolerated(0.31) unknown(0) TCGA-DD-AACJ-01 22 19373215 19373215 C T HIRA Missense_Mutation p.M386I 0.32 tolerated(0.44) benign(0.035) TCGA-DD-AACJ-01 22 23632562 23632562 T C BCR Missense_Mutation p.V915A 0.37 deleterious(0.03) possibly_damaging(0.822) TCGA-DD-AACJ-01 22 24057304 24057304 G A KB-1572G7.2 RNA 0.18 TCGA-DD-AACJ-01 22 42269979 42269979 A G SREBF2 Missense_Mutation p.K349E 0.24 deleterious(0) probably_damaging(0.93) TCGA-DD-AACJ-01 2 107007848 107007848 C G PLGLA RNA 0.26 TCGA-DD-AACJ-01 2 109381547 109381547 C T RANBP2 Missense_Mutation p.P1518S 0.35 tolerated(0.11) benign(0.003) TCGA-DD-AACJ-01 2 167288893 167288893 A T SCN7A Missense_Mutation p.S843T 0.40 tolerated(0.06) probably_damaging(0.985) TCGA-DD-AACJ-01 2 184022187 184022187 T A NUP35 Silent p.S185S 0.37 TCGA-DD-AACJ-01 2 191334570 191334570 A C MFSD6 Missense_Mutation p.E540A 0.42 deleterious(0) probably_damaging(0.999) TCGA-DD-AACJ-01 2 201761868 201761868 A C NIF3L1 Missense_Mutation p.I266L 0.43 tolerated(0.08) benign(0.021) TCGA-DD-AACJ-01 2 215852376 215852376 G T ABCA12 Missense_Mutation p.S1324Y 0.05 tolerated(1) benign(0.157) TCGA-DD-AACJ-01 2 219692330 219692330 G C PRKAG3 Missense_Mutation p.F281L 0.35 tolerated(0.24) benign(0.003) TCGA-DD-AACJ-01 2 27169916 27169916 C T DPYSL5 3'UTR 0.48 TCGA-DD-AACJ-01 2 32476106 32476106 A T NLRC4 Missense_Mutation p.I276N 0.41 deleterious(0.03) benign(0.16) TCGA-DD-AACJ-01 2 32724675 32724675 C T BIRC6 Silent p.L2844L 0.34 TCGA-DD-AACJ-01 2 99012481 99012481 G A CNGA3 Missense_Mutation p.R283Q 0.37 deleterious(0.01) probably_damaging(0.979) TCGA-DD-AACJ-01 3 121410757 121410757 T C GOLGB1 Missense_Mutation p.Y2485C 0.43 probably_damaging(1) TCGA-DD-AACJ-01 3 122284854 122284854 G A DTX3L Silent p.P112P 0.38 TCGA-DD-AACJ-01 3 152554320 152554320 A T P2RY1 Missense_Mutation p.D250V 0.46 tolerated(0.18) benign(0.197) TCGA-DD-AACJ-01 3 195711102 195711102 T G SDHAP1 RNA 0.26 TCGA-DD-AACJ-01 3 32030428 32030428 C A ZNF860 5'UTR 0.48 TCGA-DD-AACJ-01 3 38520626 38520626 A G ACVR2B Missense_Mutation p.Q225R 0.39 tolerated(0.12) benign(0.002) TCGA-DD-AACJ-01 3 41266124 41266124 A G CTNNB1 Missense_Mutation p.T41A 0.40 deleterious(0) possibly_damaging(0.844) TCGA-DD-AACJ-01 3 51664804 51664804 G T RAD54L2 Nonsense_Mutation p.E228* 0.48 TCGA-DD-AACJ-01 3 64004653 64004653 A C PSMD6 Silent p.L186L 0.33 TCGA-DD-AACJ-01 3 72873605 72873605 T C SHQ1 Missense_Mutation p.S233G 0.35 tolerated(0.06) benign(0.02) TCGA-DD-AACJ-01 4 100870886 100870886 C G H2AFZ Missense_Mutation p.K5N 0.39 deleterious(0.05) benign(0.184) TCGA-DD-AACJ-01 4 184180883 184180883 T G WWC2 Splice_Site p.X429_splice 0.44 TCGA-DD-AACJ-01 4 187510117 187510117 T C FAT1 Missense_Mutation p.R4466G 0.33 benign(0.003) TCGA-DD-AACJ-01 4 57796354 57796355 - A REST Frame_Shift_Ins p.T446Nfs*18 0.32 TCGA-DD-AACJ-01 4 71396893 71396893 G C AMTN Missense_Mutation p.Q165H 0.32 deleterious(0.04) benign(0.039) TCGA-DD-AACJ-01 4 9785589 9785589 T C DRD5 3'UTR 0.58 TCGA-DD-AACJ-01 5 100231434 100231434 G A ST8SIA4 Nonsense_Mutation p.R57* 0.28 TCGA-DD-AACJ-01 5 128861992 128861992 G C ADAMTS19 Missense_Mutation p.R304T 0.61 tolerated(0.14) benign(0.011) TCGA-DD-AACJ-01 5 139494970 139494970 A G PURA 3'UTR 0.28 TCGA-DD-AACJ-01 5 60825879 60825879 A T ZSWIM6 Missense_Mutation p.E613V 0.60 tolerated(0.05) possibly_damaging(0.886) TCGA-DD-AACJ-01 5 74324388 74324388 C G GCNT4 3'UTR 0.58 TCGA-DD-AACJ-01 6 127912797 127912797 T C C6orf58 3'UTR 0.56 TCGA-DD-AACJ-01 6 155632360 155632360 C A TFB1M Missense_Mutation p.V83L 0.35 tolerated(0.23) benign(0.209) TCGA-DD-AACJ-01 6 32724431 32724431 G T HLA-DQB2 Intron 0.50 TCGA-DD-AACJ-01 6 42629942 42629942 A G UBR2 Missense_Mutation p.M1155V 0.22 tolerated(0.11) benign(0.003) TCGA-DD-AACJ-01 6 54095631 54095631 A G MLIP Silent p.P411P 0.52 TCGA-DD-AACJ-01 6 97246634 97246634 A G GPR63 Missense_Mutation p.V325A 0.31 tolerated(0.09) benign(0.019) TCGA-DD-AACJ-01 7 117243681 117243681 T A CFTR Missense_Mutation p.I918N 0.17 deleterious(0) probably_damaging(0.994) TCGA-DD-AACJ-01 7 12433261 12433261 T A VWDE Missense_Mutation p.I68F 0.34 deleterious(0) possibly_damaging(0.526) TCGA-DD-AACJ-01 7 150070685 150070685 T G REPIN1 3'Flank 0.43 TCGA-DD-AACJ-01 7 16666729 16666729 T A ANKMY2 Silent p.G69G 0.27 TCGA-DD-AACJ-01 7 30102308 30102308 G T PLEKHA8 Missense_Mutation p.G417V 0.34 tolerated(0.15) possibly_damaging(0.862) TCGA-DD-AACJ-01 7 4917682 4917682 C T RADIL Missense_Mutation p.R30Q 0.44 deleterious(0.03) probably_damaging(0.997) TCGA-DD-AACJ-01 8 12589255 12589255 C A LONRF1 Nonsense_Mutation p.E560* 0.71 TCGA-DD-AACJ-01 8 126445629 126445629 C G TRIB1 Missense_Mutation p.T144S 0.19 tolerated(0.67) benign(0.105) TCGA-DD-AACJ-01 8 139895407 139895407 G T COL22A1 Silent p.G3G 0.53 TCGA-DD-AACJ-01 8 145947963 145947963 C A ZNF251 Missense_Mutation p.S361I 0.30 tolerated(0.09) benign(0.195) TCGA-DD-AACJ-01 9 112170621 112170621 T G PTPN3 Silent p.R539R 0.05 TCGA-DD-AACJ-01 9 127217400 127217406 CCGTGAA - GPR144 Frame_Shift_Del p.R482* 0.39 TCGA-DD-AACJ-01 9 14869010 14869010 G A FREM1 5'UTR 0.31 TCGA-DD-AACJ-01 9 38411534 38411534 G T IGFBPL1 Silent p.R234R 0.29 TCGA-DD-AACJ-01 9 87635234 87635234 T A NTRK2 Silent p.I762I 0.31 TCGA-DD-AACJ-01 X 2406666 2406666 C A ZBED1 3'UTR 0.40 TCGA-DD-AACJ-01 X 40511055 40511055 T A MED14 3'UTR 0.81 TCGA-DD-AACK-01 10 105794497 105794497 A T COL17A1 Silent p.P1216P 0.38 TCGA-DD-AACK-01 10 118891477 118891477 A T VAX1 3'Flank 0.26 TCGA-DD-AACK-01 10 134738360 134738360 C A TTC40 Missense_Mutation p.V366F 0.36 tolerated(0.27) benign(0.082) TCGA-DD-AACK-01 10 18270244 18270244 T A SLC39A12 Missense_Mutation p.C310S 0.36 deleterious(0) probably_damaging(0.973) TCGA-DD-AACK-01 10 28491163 28491163 C A MPP7 Silent p.L25L 0.34 TCGA-DD-AACK-01 10 53457589 53457589 T A CSTF2T Missense_Mutation p.Q574L 0.35 deleterious(0) unknown(0) TCGA-DD-AACK-01 10 8097825 8097825 G A GATA3 Silent p.R69R 0.40 TCGA-DD-AACK-01 10 88705230 88705230 G A MMRN2 Silent p.Y99Y 0.06 TCGA-DD-AACK-01 11 124632101 124632101 G T ESAM 5'UTR 0.40 TCGA-DD-AACK-01 11 128680398 128680398 T A FLI1 Missense_Mutation p.S292T 0.28 deleterious(0.02) probably_damaging(0.946) TCGA-DD-AACK-01 11 45889179 45889179 A T CRY2 Missense_Mutation p.Y274F 0.37 tolerated(1) benign(0.044) TCGA-DD-AACK-01 11 55135453 55135453 A T OR4A15 Nonsense_Mutation p.K32* 0.41 TCGA-DD-AACK-01 11 56344393 56344393 C A OR5M10 Nonsense_Mutation p.E269* 0.36 TCGA-DD-AACK-01 11 61295635 61295635 T C SYT7 Missense_Mutation p.D200G 0.38 deleterious(0.04) benign(0.047) TCGA-DD-AACK-01 11 6261883 6261883 A T CNGA4 Nonsense_Mutation p.K287* 0.36 TCGA-DD-AACK-01 11 62763192 62763192 A T SLC22A8 Missense_Mutation p.C329S 0.54 deleterious(0.01) probably_damaging(1) TCGA-DD-AACK-01 11 77632432 77632432 T A INTS4 Missense_Mutation p.Y573F 0.35 deleterious(0.02) possibly_damaging(0.591) TCGA-DD-AACK-01 12 10224016 10224016 C T CLEC1A Silent p.K253K 0.08 TCGA-DD-AACK-01 12 124192255 124192255 A T TCTN2 Missense_Mutation p.S697C 0.48 deleterious(0) possibly_damaging(0.533) TCGA-DD-AACK-01 12 40618839 40618839 C A LRRK2 5'Flank 0.29 TCGA-DD-AACK-01 12 40924277 40924277 G A MUC19 Intron 0.29 TCGA-DD-AACK-01 12 42860019 42860019 C G PRICKLE1 Missense_Mutation p.C251S 0.34 deleterious(0) probably_damaging(1) TCGA-DD-AACK-01 12 48393717 48393717 G A COL2A1 Missense_Mutation p.L93F 0.31 unknown(0) TCGA-DD-AACK-01 12 50492775 50492775 A G SMARCD1 Missense_Mutation p.N514D 0.37 tolerated(0.17) possibly_damaging(0.517) TCGA-DD-AACK-01 12 6640135 6640135 T C NCAPD2 Missense_Mutation p.V1338A 0.40 tolerated(0.11) benign(0.011) TCGA-DD-AACK-01 12 66638917 66638917 G A IRAK3 Missense_Mutation p.D397N 0.52 tolerated(0.06) benign(0.272) TCGA-DD-AACK-01 12 67699492 67699492 A T CAND1 Missense_Mutation p.S682C 0.55 deleterious(0.01) possibly_damaging(0.497) TCGA-DD-AACK-01 13 103396437 103396437 C A LINC00283 RNA 0.39 TCGA-DD-AACK-01 13 111926288 111926288 A T ARHGEF7 Nonsense_Mutation p.R422* 0.25 TCGA-DD-AACK-01 13 48517535 48517540 CATGTG - SUCLA2 In_Frame_Del p.A453_H454del 0.22 TCGA-DD-AACK-01 13 52863987 52863987 A T RP11-248G5.8 RNA 0.41 TCGA-DD-AACK-01 14 23900980 23900980 C T MYH7 Missense_Mutation p.S210N 0.35 tolerated(0.31) benign(0.001) TCGA-DD-AACK-01 14 28734290 28734290 G T BNIP3P1 RNA 0.48 TCGA-DD-AACK-01 14 36003923 36003923 A T INSM2 Silent p.A155A 0.29 TCGA-DD-AACK-01 14 56757106 56757106 G A PELI2 Missense_Mutation p.E210K 0.35 deleterious(0) probably_damaging(0.921) TCGA-DD-AACK-01 14 64699774 64699774 A T ESR2 3'Flank 0.48 TCGA-DD-AACK-01 14 66958879 66958879 A G LINC00238 RNA 0.28 TCGA-DD-AACK-01 14 67589075 67589075 T C GPHN Silent p.L577L 0.36 TCGA-DD-AACK-01 14 68215095 68215095 G A ZFYVE26 3'UTR 0.30 TCGA-DD-AACK-01 14 75139861 75139861 T A AREL1 Missense_Mutation p.I407F 0.40 tolerated(0.7) benign(0.153) TCGA-DD-AACK-01 14 79432393 79432393 T G NRXN3 Silent p.R434R 0.32 TCGA-DD-AACK-01 14 91701172 91701172 G T GPR68 Missense_Mutation p.P75T 0.43 deleterious(0) probably_damaging(1) TCGA-DD-AACK-01 15 100271590 100271590 T A LYSMD4 Missense_Mutation p.R78W 0.39 deleterious(0.02) possibly_damaging(0.666) TCGA-DD-AACK-01 15 102182648 102182648 T A TM2D3 3'UTR 0.18 TCGA-DD-AACK-01 15 32928129 32928129 A G ARHGAP11A Intron 0.31 TCGA-DD-AACK-01 15 40954464 40954464 G T CASC5 3'UTR 0.38 TCGA-DD-AACK-01 15 70959550 70959550 T G UACA Missense_Mutation p.N1158T 0.44 tolerated(0.22) benign(0.027) TCGA-DD-AACK-01 15 90129169 90129169 T A TICRR Silent p.S469S 0.09 TCGA-DD-AACK-01 15 90808975 90808984 GGGCGCGTTT - NGRN Frame_Shift_Del p.G11Afs*44 0.22 TCGA-DD-AACK-01 15 99669606 99669606 A G SYNM Silent p.S346S 0.31 TCGA-DD-AACK-01 16 31090546 31090546 C T ZNF646 Silent p.Y967Y 0.34 TCGA-DD-AACK-01 16 335408 335408 G T PDIA2 Missense_Mutation p.G298W 0.07 deleterious(0) possibly_damaging(0.84) TCGA-DD-AACK-01 17 33330100 33330100 G A LIG3 Intron 0.36 TCGA-DD-AACK-01 17 34171663 34171663 G A TAF15 Missense_Mutation p.G454S 0.32 deleterious_low_confidence(0.01) unknown(0) TCGA-DD-AACK-01 17 38975889 38975889 A T KRT10 Nonsense_Mutation p.L418* 0.43 TCGA-DD-AACK-01 17 51901119 51901119 A T KIF2B Missense_Mutation p.N242I 0.30 deleterious(0.01) possibly_damaging(0.794) TCGA-DD-AACK-01 17 74006245 74006245 A T EVPL Missense_Mutation p.L1014Q 0.75 deleterious(0) probably_damaging(0.999) TCGA-DD-AACK-01 17 7637534 7637534 T A DNAH2 Missense_Mutation p.L221H 0.35 probably_damaging(0.971) TCGA-DD-AACK-01 17 78176201 78176201 C G CARD14 Missense_Mutation p.T734S 0.19 tolerated(0.14) benign(0.017) TCGA-DD-AACK-01 17 79514592 79514592 T C C17orf70 Missense_Mutation p.I506V 0.27 tolerated(0.31) benign(0.034) TCGA-DD-AACK-01 18 33779681 33779681 A T MOCOS Missense_Mutation p.Y112F 0.38 deleterious(0) probably_damaging(0.996) TCGA-DD-AACK-01 18 58038792 58038792 T A MC4R Missense_Mutation p.H264L 0.40 deleterious(0) probably_damaging(0.996) TCGA-DD-AACK-01 19 10395559 10395559 C T ICAM1 Silent p.P427P 0.27 TCGA-DD-AACK-01 19 16212280 16212280 A T TPM4 3'UTR 0.43 TCGA-DD-AACK-01 19 2137727 2137727 T A AP3D1 Missense_Mutation p.K91M 0.34 deleterious(0) probably_damaging(1) TCGA-DD-AACK-01 19 23927688 23927688 C A ZNF681 Nonsense_Mutation p.G222* 0.31 TCGA-DD-AACK-01 19 35993746 35993746 T A DMKN Missense_Mutation p.S393C 0.32 tolerated(0.09) unknown(0) TCGA-DD-AACK-01 19 41860749 41860749 C A B9D2 Silent p.V128V 0.31 TCGA-DD-AACK-01 19 48305543 48305543 G A TPRX1 Missense_Mutation p.P242L 0.27 deleterious(0.02) unknown(0) TCGA-DD-AACK-01 19 50393835 50393835 A T IL4I1 Missense_Mutation p.W288R 0.34 tolerated(0.05) possibly_damaging(0.88) TCGA-DD-AACK-01 19 54409615 54409615 T A PRKCG Missense_Mutation p.D603E 0.34 tolerated(1) benign(0) TCGA-DD-AACK-01 19 57640310 57640310 C A USP29 Nonsense_Mutation p.Y89* 0.35 TCGA-DD-AACK-01 19 58084830 58084830 G C ZNF416 Missense_Mutation p.P148A 0.38 tolerated(0.22) benign(0.007) TCGA-DD-AACK-01 19 58111279 58111279 G T ZNF530 5'UTR 0.40 TCGA-DD-AACK-01 19 868161 868161 T A MED16 Silent p.T858T 0.35 TCGA-DD-AACK-01 19 9049962 9049962 T A MUC16 Missense_Mutation p.T10557S 0.37 benign(0.092) TCGA-DD-AACK-01 19 9049967 9049967 C A MUC16 Missense_Mutation p.R10555M 0.35 possibly_damaging(0.702) TCGA-DD-AACK-01 1 117120047 117120047 A T IGSF3 Missense_Mutation p.S1178T 0.42 deleterious(0.01) possibly_damaging(0.53) TCGA-DD-AACK-01 1 1334013 1334013 G A CCNL2 Silent p.F109F 0.55 TCGA-DD-AACK-01 1 13716891 13716891 A G PRAMEF17 Silent p.P126P 0.31 TCGA-DD-AACK-01 1 156696883 156696883 C T ISG20L2 Missense_Mutation p.G188S 0.40 deleterious(0) probably_damaging(1) TCGA-DD-AACK-01 1 160797738 160797738 G T LY9 3'UTR 0.35 TCGA-DD-AACK-01 1 160970507 160970507 C G F11R Missense_Mutation p.R101P 0.32 deleterious(0) probably_damaging(0.999) TCGA-DD-AACK-01 1 16255901 16255901 A T SPEN Nonsense_Mutation p.R1056* 0.37 TCGA-DD-AACK-01 1 16804870 16804870 T A CROCCP3 RNA 0.29 TCGA-DD-AACK-01 1 168665630 168665630 A T DPT 3'UTR 0.21 TCGA-DD-AACK-01 1 181725136 181725136 G T CACNA1E Missense_Mutation p.G1345V 0.34 tolerated(0.06) probably_damaging(0.998) TCGA-DD-AACK-01 1 19464665 19464665 C A UBR4 Silent p.R2914R 0.45 TCGA-DD-AACK-01 1 205497176 205497219 GACTGGCCAGGGCCAAGTCAGTGCCCACAAAGACTTACTCCAAT - CDK18 Frame_Shift_Del p.L316Gfs*23 0.26 TCGA-DD-AACK-01 1 22201403 22201403 T A HSPG2 Missense_Mutation p.Y1132F 0.38 probably_damaging(0.999) TCGA-DD-AACK-01 1 248202349 248202349 T C OR2L2 Silent p.R260R 0.36 TCGA-DD-AACK-01 1 35452801 35452801 T A ZMYM6 Silent p.S1294S 0.20 TCGA-DD-AACK-01 1 35851192 35851192 A T ZMYM4 Silent p.A573A 0.39 TCGA-DD-AACK-01 1 47278193 47278193 G T CYP4B1 Silent p.G131G 0.36 TCGA-DD-AACK-01 1 50317108 50317108 G C AGBL4 Silent p.P39P 0.34 TCGA-DD-AACK-01 1 63789824 63789824 G A FOXD3 Silent p.A365A 0.45 TCGA-DD-AACK-01 1 65296632 65296632 C A RAVER2 Nonsense_Mutation p.Y667* 0.34 TCGA-DD-AACK-01 1 75672389 75672389 C G SLC44A5 Missense_Mutation p.R688T 0.46 deleterious(0) possibly_damaging(0.904) TCGA-DD-AACK-01 1 86822189 86822189 G T ODF2L Missense_Mutation p.L486M 0.35 deleterious(0.05) possibly_damaging(0.625) TCGA-DD-AACK-01 1 89587483 89587483 T C GBP2 Missense_Mutation p.N56S 0.33 deleterious(0.01) probably_damaging(0.978) TCGA-DD-AACK-01 20 47602054 47602054 G C ARFGEF2 Missense_Mutation p.R727P 0.39 deleterious(0) probably_damaging(1) TCGA-DD-AACK-01 20 57768711 57768711 T A ZNF831 Silent p.P879P 0.36 TCGA-DD-AACK-01 20 60485571 60485571 G A CDH4 Missense_Mutation p.A428T 0.37 deleterious(0.04) possibly_damaging(0.465) TCGA-DD-AACK-01 20 62559694 62559694 C G DNAJC5 5'UTR 0.48 TCGA-DD-AACK-01 20 62839591 62839591 T A MYT1 Missense_Mutation p.S348T 0.37 probably_damaging(0.993) TCGA-DD-AACK-01 21 33689094 33689094 C A URB1 Missense_Mutation p.R2106L 0.42 deleterious(0) benign(0.314) TCGA-DD-AACK-01 21 34400111 34400111 G T OLIG2 Missense_Mutation p.S314I 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-DD-AACK-01 21 34655403 34655403 A G IL10RB Missense_Mutation p.Q168R 0.43 tolerated(0.4) benign(0.101) TCGA-DD-AACK-01 21 38877655 38877655 C T DYRK1A Nonsense_Mutation p.R437* 0.40 TCGA-DD-AACK-01 21 46311901 46311901 T A ITGB2 Missense_Mutation p.Q412L 0.46 tolerated(0.17) benign(0.187) TCGA-DD-AACK-01 22 35948024 35948024 C A RASD2 Missense_Mutation p.A249D 0.37 tolerated(0.6) benign(0.04) TCGA-DD-AACK-01 22 40069972 40069972 G T CACNA1I Silent p.L1596L 0.25 TCGA-DD-AACK-01 22 45132780 45132780 G T PRR5 Missense_Mutation p.G297C 0.26 deleterious(0.01) possibly_damaging(0.894) TCGA-DD-AACK-01 22 50706332 50706332 G A MAPK11 Silent p.L55L 0.37 TCGA-DD-AACK-01 2 10581984 10581984 T C ODC1 Missense_Mutation p.I329V 0.33 tolerated(0.51) probably_damaging(0.994) TCGA-DD-AACK-01 2 118735578 118735578 T A CCDC93 Missense_Mutation p.M217L 0.43 tolerated(0.24) benign(0) TCGA-DD-AACK-01 2 119752067 119752067 G T MARCO Nonsense_Mutation p.E512* 0.28 TCGA-DD-AACK-01 2 130872454 130872454 C T POTEF Silent p.K270K 0.34 TCGA-DD-AACK-01 2 136622693 136622693 T A MCM6 Missense_Mutation p.E323V 0.35 deleterious(0.01) benign(0.275) TCGA-DD-AACK-01 2 152529088 152529088 T A NEB Missense_Mutation p.Q1365L 0.47 probably_damaging(0.96) TCGA-DD-AACK-01 2 169940058 169940058 C T DHRS9 Missense_Mutation p.P178L 0.37 tolerated(0.32) benign(0.005) TCGA-DD-AACK-01 2 179472543 179472543 T A TTN Missense_Mutation p.E17657D 0.35 TCGA-DD-AACK-01 2 182322310 182322310 G T ITGA4 5'UTR 0.29 TCGA-DD-AACK-01 2 190921841 190921841 T A MSTN 3'UTR 0.43 TCGA-DD-AACK-01 2 196749353 196749353 A T DNAH7 Missense_Mutation p.F1907I 0.36 tolerated(0.27) benign(0.001) TCGA-DD-AACK-01 2 199011730 199011730 T A PLCL1 3'UTR 0.40 TCGA-DD-AACK-01 2 201791508 201791508 C T ORC2 Missense_Mutation p.G345R 0.49 deleterious(0.01) possibly_damaging(0.908) TCGA-DD-AACK-01 2 219564008 219564008 A T STK36 Silent p.P1247P 0.41 TCGA-DD-AACK-01 2 230312104 230312104 A T DNER Missense_Mutation p.C472S 0.35 deleterious(0) probably_damaging(1) TCGA-DD-AACK-01 2 233708845 233708845 C G GIGYF2 Missense_Mutation p.S1014R 0.31 unknown(0) TCGA-DD-AACK-01 2 238727032 238727032 A G RBM44 Silent p.V491V 0.43 TCGA-DD-AACK-01 2 239975278 239975281 CAGG A HDAC4 In_Frame_Del p.L1031del 0.30 TCGA-DD-AACK-01 2 26022316 26022316 C T ASXL2 Missense_Mutation p.S114N 0.05 tolerated(0.49) possibly_damaging(0.727) TCGA-DD-AACK-01 2 64796244 64796244 G T AFTPH Missense_Mutation p.W702C 0.38 deleterious(0) probably_damaging(0.991) TCGA-DD-AACK-01 2 71662050 71662050 A T ZNF638 3'UTR 0.36 TCGA-DD-AACK-01 2 9008614 9008614 A T MBOAT2 Missense_Mutation p.W317R 0.35 deleterious(0) probably_damaging(0.987) TCGA-DD-AACK-01 3 108572759 108572759 A G TRAT1 3'UTR 0.38 TCGA-DD-AACK-01 3 112693693 112693693 A T CD200R1 Silent p.P4P 0.37 TCGA-DD-AACK-01 3 179311574 179311574 T A MRPL47 Missense_Mutation p.D171V 0.38 deleterious(0) possibly_damaging(0.866) TCGA-DD-AACK-01 3 32568308 32568308 C T DYNC1LI1 Missense_Mutation p.E519K 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-DD-AACK-01 3 41268766 41268766 A T CTNNB1 Missense_Mutation p.K335I 0.39 deleterious(0) probably_damaging(0.957) TCGA-DD-AACK-01 3 77695344 77695344 A T ROBO2 3'UTR 0.39 TCGA-DD-AACK-01 4 100803039 100803039 A G LAMTOR3 3'UTR 0.05 TCGA-DD-AACK-01 4 144920597 144920597 T A GYPB Missense_Mutation p.T48S 0.41 tolerated(0.37) benign(0.016) TCGA-DD-AACK-01 4 149357529 149357529 T A NR3C2 Nonsense_Mutation p.R162* 0.27 TCGA-DD-AACK-01 4 151935691 151935691 A G LRBA Missense_Mutation p.L35P 0.39 deleterious_low_confidence(0) benign(0.001) TCGA-DD-AACK-01 4 157891991 157891991 G T PDGFC Missense_Mutation p.A22E 0.42 tolerated(0.07) benign(0.171) TCGA-DD-AACK-01 4 185691475 185691475 G - ACSL1 Intron 0.27 TCGA-DD-AACK-01 4 187454913 187454913 G T MTNR1A Missense_Mutation p.A328D 0.08 tolerated(0.18) benign(0.003) TCGA-DD-AACK-01 4 5642462 5642462 T A EVC2 Missense_Mutation p.S417C 0.33 deleterious(0.01) possibly_damaging(0.813) TCGA-DD-AACK-01 4 74277801 74277801 G A ALB Missense_Mutation p.E268K 0.35 deleterious(0) probably_damaging(0.973) TCGA-DD-AACK-01 4 79328978 79328978 G A FRAS1 Missense_Mutation p.D1431N 0.35 benign(0.406) TCGA-DD-AACK-01 4 84026085 84026085 T C PLAC8 Silent p.A69A 0.38 TCGA-DD-AACK-01 4 85781608 85781608 T A WDFY3 Missense_Mutation p.E46V 0.34 deleterious(0) benign(0.342) TCGA-DD-AACK-01 4 96761618 96761618 T A PDHA2 Missense_Mutation p.I106K 0.40 tolerated(0.05) probably_damaging(0.978) TCGA-DD-AACK-01 4 96761619 96761619 A T PDHA2 Silent p.I106I 0.41 TCGA-DD-AACK-01 5 112364597 112364597 G C MCC Intron 0.41 TCGA-DD-AACK-01 5 127522331 127522331 A T SLC12A2 3'UTR 0.32 TCGA-DD-AACK-01 5 128994333 128994333 A C ADAMTS19 Missense_Mutation p.L770F 0.31 deleterious(0.03) benign(0.04) TCGA-DD-AACK-01 5 142658923 142658923 T A NR3C1 3'Flank 0.39 TCGA-DD-AACK-01 5 14368980 14368980 C G TRIO Missense_Mutation p.S1013C 0.37 probably_damaging(0.987) TCGA-DD-AACK-01 5 148406144 148406144 T C SH3TC2 Missense_Mutation p.N1015S 0.30 tolerated(0.11) benign(0.186) TCGA-DD-AACK-01 5 169691 169691 G A PLEKHG4B Missense_Mutation p.R882H 0.06 tolerated(0.88) benign(0.218) TCGA-DD-AACK-01 5 17275577 17275577 G A BASP1 Silent p.K84K 0.36 TCGA-DD-AACK-01 5 45303784 45303785 - T HCN1 Frame_Shift_Ins p.M512Nfs*17 0.31 TCGA-DD-AACK-01 6 129813106 129813106 G A LAMA2 Silent p.Q2653Q 0.36 TCGA-DD-AACK-01 6 143074350 143074350 T A HIVEP2 Missense_Mutation p.K2412M 0.41 deleterious_low_confidence(0) possibly_damaging(0.614) TCGA-DD-AACK-01 6 34309645 34309645 A G NUDT3 Silent p.C68C 0.05 TCGA-DD-AACK-01 6 36269664 36269664 A T PNPLA1 Nonsense_Mutation p.K268* 0.28 TCGA-DD-AACK-01 6 71185406 71185406 T A FAM135A Nonsense_Mutation p.L113* 0.39 TCGA-DD-AACK-01 6 74228303 74228303 T A EEF1A1 Missense_Mutation p.E268V 0.33 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-DD-AACK-01 6 79679863 79679863 T C PHIP Missense_Mutation p.I1009V 0.35 deleterious(0.02) possibly_damaging(0.891) TCGA-DD-AACK-01 6 99353398 99353398 G A FBXL4 Missense_Mutation p.S336F 0.28 tolerated(0.08) possibly_damaging(0.653) TCGA-DD-AACK-01 7 107356078 107356078 T A SLC26A4 3'UTR 0.43 TCGA-DD-AACK-01 7 137761312 137761312 C A AKR1D1 Missense_Mutation p.N16K 0.37 deleterious(0.01) possibly_damaging(0.508) TCGA-DD-AACK-01 7 149493829 149493829 T A SSPO RNA 0.46 TCGA-DD-AACK-01 7 18706241 18706241 A T HDAC9 Intron 0.22 TCGA-DD-AACK-01 7 20698723 20698723 C A ABCB5 Intron 0.28 TCGA-DD-AACK-01 7 2309216 2309216 C T SNX8 Missense_Mutation p.C200Y 0.40 tolerated(0.05) possibly_damaging(0.707) TCGA-DD-AACK-01 7 5385411 5385411 T A TNRC18 Missense_Mutation p.E1834V 0.48 benign(0.182) TCGA-DD-AACK-01 7 56125786 56125786 T C CCT6A Missense_Mutation p.Y239H 0.40 deleterious(0.01) probably_damaging(0.975) TCGA-DD-AACK-01 7 64292923 64292923 A T ZNF138 3'Flank 0.35 TCGA-DD-AACK-01 7 71130560 71130560 A T WBSCR17 Silent p.I415I 0.38 TCGA-DD-AACK-01 7 83032013 83032013 T A SEMA3E Nonsense_Mutation p.K360* 0.39 TCGA-DD-AACK-01 8 125022837 125022837 T C FER1L6 Silent p.N568N 0.30 TCGA-DD-AACK-01 8 38065143 38065143 T C BAG4 Silent p.S164S 0.48 TCGA-DD-AACK-01 8 52323892 52323892 T G PXDNL Missense_Mutation p.R660S 0.46 deleterious(0.03) possibly_damaging(0.53) TCGA-DD-AACK-01 8 59409615 59409615 G A CYP7A1 Silent p.I152I 0.27 TCGA-DD-AACK-01 8 7340185 7340185 A T DEFB106B Missense_Mutation p.C47S 0.54 deleterious(0) probably_damaging(0.937) TCGA-DD-AACK-01 8 99440918 99440918 G A KCNS2 Nonsense_Mutation p.W237* 0.38 TCGA-DD-AACK-01 9 110081131 110081131 C G RAD23B Missense_Mutation p.P218A 0.24 deleterious(0) probably_damaging(0.98) TCGA-DD-AACK-01 9 117168876 117168876 C A DFNB31 Silent p.L665L 0.28 TCGA-DD-AACK-01 9 139943427 139943427 T A ENTPD2 Missense_Mutation p.E417V 0.20 deleterious(0.01) possibly_damaging(0.9) TCGA-DD-AACK-01 9 21971035 21971035 T C CDKN2A Missense_Mutation p.D108G 0.33 deleterious(0) probably_damaging(0.999) TCGA-DD-AACK-01 9 2643403 2643403 G A VLDLR Missense_Mutation p.R231H 0.38 tolerated(0.14) benign(0.002) TCGA-DD-AACK-01 9 35736083 35736083 T C CREB3 Missense_Mutation p.V217A 0.36 deleterious(0.03) benign(0.346) TCGA-DD-AACK-01 9 79321952 79321952 T A PRUNE2 Silent p.P1746P 0.31 TCGA-DD-AACK-01 9 79325451 79325451 T A PRUNE2 Missense_Mutation p.N580I 0.36 tolerated(0.48) benign(0.045) TCGA-DD-AACK-01 X 129318331 129318331 C A RAB33A Missense_Mutation p.H111N 0.80 tolerated(0.21) probably_damaging(0.994) TCGA-DD-AACK-01 X 53561499 53561499 T A HUWE1 Missense_Mutation p.K4270M 0.69 unknown(0) TCGA-DD-AACK-01 X 70443636 70443637 - TCATCT GJB1 In_Frame_Ins p.I30_F31dup 0.48 TCGA-DD-AACK-01 Y 4924912 4924912 T A PCDH11Y Silent p.S16S 0.69 TCGA-DD-AACL-01 10 103296339 103296339 A T BTRC Missense_Mutation p.L502F 0.18 deleterious(0) possibly_damaging(0.892) TCGA-DD-AACL-01 10 106937655 106937655 T A SORCS3 Intron 0.14 TCGA-DD-AACL-01 10 120070409 120070409 T C FAM204A Missense_Mutation p.K221R 0.20 deleterious(0.02) benign(0.226) TCGA-DD-AACL-01 10 121275042 121275042 C T RGS10 Missense_Mutation p.M126I 0.23 tolerated(0.13) probably_damaging(0.991) TCGA-DD-AACL-01 10 122650234 122650234 A C WDR11 Missense_Mutation p.M784L 0.16 tolerated(0.4) benign(0.008) TCGA-DD-AACL-01 10 124591968 124591968 T A CUZD1 Splice_Site p.X551_splice 0.25 TCGA-DD-AACL-01 10 134022595 134022595 T C STK32C Missense_Mutation p.Y421C 0.21 tolerated(0.06) possibly_damaging(0.571) TCGA-DD-AACL-01 10 16547129 16547129 A G PTER Missense_Mutation p.D270G 0.23 tolerated(0.08) probably_damaging(1) TCGA-DD-AACL-01 10 21807397 21807397 T C SKIDA1 5'UTR 0.21 TCGA-DD-AACL-01 10 27306542 27306542 T A ANKRD26 Silent p.I1465I 0.24 TCGA-DD-AACL-01 10 27337852 27337852 T A ANKRD26 Silent p.I564I 0.27 TCGA-DD-AACL-01 10 61719187 61719187 A T C10orf40 Intron 0.26 TCGA-DD-AACL-01 10 72434384 72434384 T A ADAMTS14 Missense_Mutation p.F52Y 0.26 tolerated(0.39) benign(0.268) TCGA-DD-AACL-01 10 75551724 75551724 G T ZSWIM8 Missense_Mutation p.R476L 0.19 deleterious(0) benign(0.197) TCGA-DD-AACL-01 10 7798036 7798042 TTCAAAC - KIN 3'UTR 0.17 TCGA-DD-AACL-01 10 79397295 79397295 G A KCNMA1 Silent p.L36L 0.23 TCGA-DD-AACL-01 10 88414684 88414684 A C OPN4 Silent p.T48T 0.21 TCGA-DD-AACL-01 10 94267964 94267964 T A IDE Splice_Site p.X354_splice 0.20 TCGA-DD-AACL-01 10 96116932 96116932 T A NOC3L Silent p.P169P 0.18 TCGA-DD-AACL-01 10 98985807 98985807 T A ARHGAP19 3'UTR 0.19 TCGA-DD-AACL-01 11 102479781 102479781 C A MMP20 Missense_Mutation p.G233V 0.26 deleterious(0) probably_damaging(1) TCGA-DD-AACL-01 11 105768993 105768993 A T GRIA4 Splice_Site p.X243_splice 0.21 TCGA-DD-AACL-01 11 113270966 113270966 C A ANKK1 Missense_Mutation p.P759T 0.25 deleterious_low_confidence(0.03) benign(0.221) TCGA-DD-AACL-01 11 113295219 113295219 T A DRD2 Missense_Mutation p.N52I 0.19 deleterious(0) probably_damaging(1) TCGA-DD-AACL-01 11 117299320 117299320 A T DSCAML1 Silent p.A2022A 0.18 TCGA-DD-AACL-01 11 117375751 117375751 A T DSCAML1 Silent p.P750P 0.13 TCGA-DD-AACL-01 11 118851924 118851924 T A FOXR1 Missense_Mutation p.M286K 0.18 deleterious(0.05) benign(0.017) TCGA-DD-AACL-01 11 1268952 1268952 C A MUC5B Silent p.G3614G 0.16 TCGA-DD-AACL-01 11 13721881 13721881 A T FAR1 Missense_Mutation p.R69S 0.23 deleterious(0.03) possibly_damaging(0.457) TCGA-DD-AACL-01 11 17632761 17632761 A T OTOG Missense_Mutation p.R1984W 0.16 benign(0.015) TCGA-DD-AACL-01 11 18955672 18955672 G T MRGPRX1 Silent p.L220L 0.12 TCGA-DD-AACL-01 11 26713894 26713894 A T SLC5A12 Intron 0.42 TCGA-DD-AACL-01 11 35223290 35223290 A T CD44 Missense_Mutation p.H370L 0.24 deleterious(0.03) benign(0.075) TCGA-DD-AACL-01 11 36595110 36595110 A T RAG1 Nonsense_Mutation p.K86* 0.26 TCGA-DD-AACL-01 11 36615073 36615073 T A RAG2 Missense_Mutation p.I216F 0.15 deleterious(0) possibly_damaging(0.487) TCGA-DD-AACL-01 11 379652 379652 A T B4GALNT4 Silent p.P813P 0.25 TCGA-DD-AACL-01 11 4674516 4674516 T A OR51E1 Missense_Mutation p.Y254N 0.31 deleterious(0) probably_damaging(0.947) TCGA-DD-AACL-01 11 46819392 46819392 T A CKAP5 Missense_Mutation p.K434M 0.19 deleterious(0) possibly_damaging(0.763) TCGA-DD-AACL-01 11 55541071 55541071 T A OR5D13 Missense_Mutation p.L53H 0.28 deleterious(0) benign(0.394) TCGA-DD-AACL-01 11 56000215 56000215 T A OR5T2 Silent p.T149T 0.28 TCGA-DD-AACL-01 11 57076311 57076311 G A TNKS1BP1 Missense_Mutation p.P1292S 0.16 tolerated(0.33) benign(0.015) TCGA-DD-AACL-01 11 58940270 58940270 C G DTX4 Missense_Mutation p.Q68E 0.26 deleterious(0) possibly_damaging(0.845) TCGA-DD-AACL-01 11 59828780 59828780 A C MS4A3 Missense_Mutation p.Q49H 0.17 deleterious(0) possibly_damaging(0.906) TCGA-DD-AACL-01 11 60170383 60170383 A T MS4A14 Splice_Site p.X107_splice 0.17 TCGA-DD-AACL-01 11 63235905 63235905 A T HRASLS5 Silent p.I136I 0.11 TCGA-DD-AACL-01 11 65365686 65365686 T A MAP3K11 3'UTR 0.32 TCGA-DD-AACL-01 11 68475551 68475551 T A MTL5 3'UTR 0.36 TCGA-DD-AACL-01 11 73066957 73066957 A T ARHGEF17 Nonsense_Mutation p.K1208* 0.20 TCGA-DD-AACL-01 11 89537313 89537313 T C TRIM49 Missense_Mutation p.S109G 0.32 tolerated(0.06) possibly_damaging(0.544) TCGA-DD-AACL-01 11 89911262 89911262 T A NAALAD2 Nonsense_Mutation p.L612* 0.20 TCGA-DD-AACL-01 12 100453136 100453136 T A UHRF1BP1L Missense_Mutation p.Y640F 0.20 tolerated(0.6) benign(0.001) TCGA-DD-AACL-01 12 100813686 100813686 C G SLC17A8 Missense_Mutation p.Q507E 0.18 deleterious(0) probably_damaging(0.983) TCGA-DD-AACL-01 12 101711258 101711258 A G UTP20 Missense_Mutation p.N852S 0.26 deleterious(0.02) possibly_damaging(0.867) TCGA-DD-AACL-01 12 105540256 105540256 A T KIAA1033 Missense_Mutation p.R787S 0.20 deleterious(0) probably_damaging(0.999) TCGA-DD-AACL-01 12 109186287 109186287 C T SSH1 Silent p.Q556Q 0.18 TCGA-DD-AACL-01 12 109968392 109968392 A T UBE3B Nonsense_Mutation p.R951* 0.30 TCGA-DD-AACL-01 12 119978503 119978503 T A CCDC60 Missense_Mutation p.Y546N 0.17 deleterious(0.03) benign(0.05) TCGA-DD-AACL-01 12 123261937 123261937 A T CCDC62 Intron 0.23 TCGA-DD-AACL-01 12 124284917 124284917 A T DNAH10 Missense_Mutation p.Q697L 0.19 benign(0.11) TCGA-DD-AACL-01 12 124427948 124427948 T A CCDC92 Missense_Mutation p.S43C 0.27 deleterious(0.01) possibly_damaging(0.896) TCGA-DD-AACL-01 12 126138935 126138935 A T TMEM132B Silent p.I972I 0.33 TCGA-DD-AACL-01 12 12982605 12982605 A T DDX47 3'UTR 0.23 TCGA-DD-AACL-01 12 2800241 2800241 T A CACNA1C Missense_Mutation p.V2146E 0.21 tolerated_low_confidence(0.28) benign(0.038) TCGA-DD-AACL-01 12 41374784 41374784 T A CNTN1 Silent p.R626R 0.21 TCGA-DD-AACL-01 12 48057154 48057154 T A RPAP3 3'UTR 0.25 TCGA-DD-AACL-01 12 5020350 5020350 A T KCNA1 5'UTR 0.33 TCGA-DD-AACL-01 12 52646093 52646093 G T KRT7 3'Flank 0.27 TCGA-DD-AACL-01 12 52680125 52680125 A T KRT81 Missense_Mutation p.C478S 0.20 tolerated(0.22) unknown(0) TCGA-DD-AACL-01 12 52797536 52797536 A - KRT82 Frame_Shift_Del p.L190Qfs*36 0.13 TCGA-DD-AACL-01 12 52883809 52883809 A T KRT6A Missense_Mutation p.L374Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-DD-AACL-01 12 56481414 56481414 G T ERBB3 Missense_Mutation p.D201Y 0.25 tolerated(0.07) probably_damaging(0.999) TCGA-DD-AACL-01 12 58127876 58127876 A T AGAP2 Missense_Mutation p.H494Q 0.22 deleterious(0.01) possibly_damaging(0.858) TCGA-DD-AACL-01 12 70965670 70965670 A T PTPRB Missense_Mutation p.Y1014N 0.17 deleterious(0) probably_damaging(0.997) TCGA-DD-AACL-01 12 70989857 70989857 A T PTPRB Silent p.S410S 0.19 TCGA-DD-AACL-01 12 85466707 85466707 A G LRRIQ1 Silent p.E906E 0.21 TCGA-DD-AACL-01 12 8813492 8813492 A T MFAP5 Missense_Mutation p.W21R 0.22 tolerated(0.06) benign(0.134) TCGA-DD-AACL-01 12 91449375 91449375 T A KERA Silent p.I228I 0.30 TCGA-DD-AACL-01 13 103053956 103053956 A G FGF14 Missense_Mutation p.F25L 0.08 deleterious_low_confidence(0.02) benign(0.001) TCGA-DD-AACL-01 13 114523825 114523825 T A GAS6 3'UTR 0.13 TCGA-DD-AACL-01 13 25374648 25374648 G T RNF17 Missense_Mutation p.L578F 0.26 deleterious(0) probably_damaging(0.969) TCGA-DD-AACL-01 13 46627758 46627758 C A CPB2 Missense_Mutation p.R421S 0.27 tolerated(0.08) benign(0.444) TCGA-DD-AACL-01 13 84453857 84453857 T A SLITRK1 Missense_Mutation p.S596C 0.26 deleterious(0.03) possibly_damaging(0.662) TCGA-DD-AACL-01 14 104029339 104029339 A T APOPT1 Missense_Mutation p.M14L 0.18 tolerated(0.15) benign(0) TCGA-DD-AACL-01 14 20711318 20711318 T A OR11H4 Missense_Mutation p.L123H 0.31 deleterious(0) possibly_damaging(0.614) TCGA-DD-AACL-01 14 21215986 21215986 G A EDDM3A Missense_Mutation p.E83K 0.27 tolerated(0.97) benign(0.003) TCGA-DD-AACL-01 14 23828142 23828142 C T EFS Silent p.P398P 0.15 TCGA-DD-AACL-01 14 45644716 45644716 C T FANCM Missense_Mutation p.P920L 0.29 tolerated(0.06) benign(0.004) TCGA-DD-AACL-01 14 45645010 45645010 A T FANCM Missense_Mutation p.E1018V 0.24 tolerated(0.08) benign(0.111) TCGA-DD-AACL-01 14 52898893 52898893 T A TXNDC16 3'UTR 0.20 TCGA-DD-AACL-01 14 67864480 67864480 A T PLEK2 Missense_Mutation p.Y36N 0.20 deleterious(0) probably_damaging(0.986) TCGA-DD-AACL-01 14 89105158 89105158 T A EML5 Missense_Mutation p.Q1444L 0.19 deleterious(0) probably_damaging(1) TCGA-DD-AACL-01 14 92403334 92403334 T A FBLN5 Silent p.I112I 0.20 TCGA-DD-AACL-01 15 44120478 44120478 A T WDR76 Nonsense_Mutation p.K126* 0.34 TCGA-DD-AACL-01 15 54919024 54919024 A T UNC13C Splice_Site p.X2120_splice 0.30 TCGA-DD-AACL-01 15 78841514 78841514 A T PSMA4 3'UTR 0.31 TCGA-DD-AACL-01 16 2104375 2104375 A T TSC2 Missense_Mutation p.R139W 0.31 deleterious(0) probably_damaging(0.997) TCGA-DD-AACL-01 16 23436070 23436070 G A COG7 Missense_Mutation p.H337Y 0.29 tolerated(0.09) benign(0.001) TCGA-DD-AACL-01 16 32266314 32266314 A T TP53TG3D 3'UTR 0.25 TCGA-DD-AACL-01 16 46781875 46781875 C T MYLK3 Silent p.G77G 0.26 TCGA-DD-AACL-01 16 66920842 66920842 A T PDP2 3'UTR 0.28 TCGA-DD-AACL-01 16 7657284 7657284 A T RBFOX1 Intron 0.19 TCGA-DD-AACL-01 16 84270539 84270539 T A KCNG4 Missense_Mutation p.R185W 0.20 deleterious(0.01) benign(0.394) TCGA-DD-AACL-01 16 88494260 88494260 A T ZNF469 Missense_Mutation p.R128W 0.32 possibly_damaging(0.692) TCGA-DD-AACL-01 17 26857852 26857852 C T FOXN1 Missense_Mutation p.P306S 0.26 deleterious(0) probably_damaging(1) TCGA-DD-AACL-01 17 26861766 26861766 G C FOXN1 Missense_Mutation p.G393R 0.18 tolerated(1) benign(0.005) TCGA-DD-AACL-01 17 26888503 26888503 C T PIGS Missense_Mutation p.A205T 0.28 tolerated(0.07) benign(0.063) TCGA-DD-AACL-01 17 28548654 28548654 A T SLC6A4 Missense_Mutation p.I108K 0.28 deleterious(0) probably_damaging(0.915) TCGA-DD-AACL-01 17 31322727 31322727 T A SPACA3 Missense_Mutation p.L112Q 0.22 deleterious(0) probably_damaging(0.976) TCGA-DD-AACL-01 17 33454263 33454263 G T FNDC8 Missense_Mutation p.G138C 0.15 tolerated_low_confidence(0.09) benign(0.152) TCGA-DD-AACL-01 17 39411680 39411680 A T KRTAP9-9 Missense_Mutation p.R15W 0.27 deleterious(0) unknown(0) TCGA-DD-AACL-01 17 39525975 39525975 G T KRT33B Missense_Mutation p.L10M 0.22 tolerated(0.27) benign(0.025) TCGA-DD-AACL-01 17 41582192 41582192 A T DHX8 Missense_Mutation p.Q576L 0.18 deleterious(0.03) benign(0.081) TCGA-DD-AACL-01 17 42249420 42249420 G C ASB16 Missense_Mutation p.W103S 0.24 deleterious(0) probably_damaging(1) TCGA-DD-AACL-01 17 42327879 42327879 A T SLC4A1 Missense_Mutation p.F895I 0.20 deleterious(0.05) benign(0.365) TCGA-DD-AACL-01 17 42335828 42335828 T A SLC4A1 Missense_Mutation p.Y347F 0.24 tolerated(0.6) benign(0.044) TCGA-DD-AACL-01 17 61623092 61623092 T A KCNH6 Silent p.P938P 0.19 TCGA-DD-AACL-01 17 65186459 65186459 T A HELZ Missense_Mutation p.Q190H 0.18 deleterious(0.02) probably_damaging(0.955) TCGA-DD-AACL-01 17 66041902 66041902 A T KPNA2 Silent p.L454L 0.17 TCGA-DD-AACL-01 17 68171897 68171897 A T KCNJ2 Missense_Mutation p.E239D 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-DD-AACL-01 17 73566301 73566301 C T LLGL2 Silent p.L613L 0.33 TCGA-DD-AACL-01 17 74083767 74083767 T A EXOC7 Missense_Mutation p.Q517L 0.19 tolerated(0.72) benign(0.205) TCGA-DD-AACL-01 17 74087274 74087274 T A EXOC7 Missense_Mutation p.Q284L 0.32 tolerated(0.14) benign(0.002) TCGA-DD-AACL-01 17 7577569 7577569 A G TP53 Missense_Mutation p.C238R 0.40 deleterious(0) probably_damaging(1) TCGA-DD-AACL-01 18 21422660 21422660 A T LAMA3 Silent p.S1183S 0.26 TCGA-DD-AACL-01 18 2784472 2784472 A T SMCHD1 Missense_Mutation p.T1858S 0.21 deleterious(0) probably_damaging(0.996) TCGA-DD-AACL-01 18 30350114 30350114 C T KLHL14 Silent p.V147V 0.20 TCGA-DD-AACL-01 18 45566767 45566767 T A ZBTB7C Nonsense_Mutation p.K238* 0.20 TCGA-DD-AACL-01 18 56651265 56651265 C T ZNF532 Missense_Mutation p.A1158V 0.18 deleterious(0.02) benign(0.354) TCGA-DD-AACL-01 18 59217403 59217403 C T CDH20 Missense_Mutation p.P614L 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-DD-AACL-01 18 64172081 64172081 T A CDH19 Missense_Mutation p.M763L 0.16 tolerated(0.65) benign(0.102) TCGA-DD-AACL-01 18 64172083 64172083 C A CDH19 Missense_Mutation p.C762F 0.16 deleterious(0.01) benign(0.219) TCGA-DD-AACL-01 18 6956644 6956644 C T LAMA1 Silent p.R2695R 0.12 TCGA-DD-AACL-01 18 70205290 70205290 A T CBLN2 3'UTR 0.18 TCGA-DD-AACL-01 18 72345386 72345386 A T ZNF407 Missense_Mutation p.Q804L 0.18 tolerated(0.22) benign(0.02) TCGA-DD-AACL-01 19 14507927 14507927 A T CD97 Missense_Mutation p.S173C 0.30 deleterious(0.04) possibly_damaging(0.84) TCGA-DD-AACL-01 19 15794357 15794357 A G CYP4F12 Silent p.K234K 0.22 TCGA-DD-AACL-01 19 17122291 17122291 T A CPAMD8 Missense_Mutation p.R204W 0.17 deleterious(0) probably_damaging(0.998) TCGA-DD-AACL-01 19 17678227 17678227 G C COLGALT1 Missense_Mutation p.D168H 0.16 deleterious(0) possibly_damaging(0.906) TCGA-DD-AACL-01 19 19766889 19766889 G A ATP13A1 Missense_Mutation p.P396L 0.17 deleterious(0.01) probably_damaging(0.942) TCGA-DD-AACL-01 19 3382056 3382056 A T NFIC Missense_Mutation p.K126M 0.40 deleterious(0) probably_damaging(1) TCGA-DD-AACL-01 19 3573899 3573899 A T HMG20B Intron 0.21 TCGA-DD-AACL-01 19 36643360 36643360 A T COX7A1 5'UTR 0.30 TCGA-DD-AACL-01 19 36728513 36728513 A T ZNF146 3'UTR 0.22 TCGA-DD-AACL-01 19 36832052 36832052 T A ZFP14 Nonsense_Mutation p.K226* 0.28 TCGA-DD-AACL-01 19 38877316 38877316 C T GGN Missense_Mutation p.A196T 0.23 tolerated_low_confidence(0.25) unknown(0) TCGA-DD-AACL-01 19 39998581 39998581 A T DLL3 Silent p.L595L 0.16 TCGA-DD-AACL-01 19 42132079 42132079 A T CEACAM4 Missense_Mutation p.L107Q 0.25 deleterious(0) probably_damaging(1) TCGA-DD-AACL-01 19 44676286 44676286 G T ZNF226 Nonsense_Mutation p.E21* 0.17 TCGA-DD-AACL-01 19 45303670 45303670 G T CBLC Silent p.A465A 0.18 TCGA-DD-AACL-01 19 46916268 46916268 A T CCDC8 5'UTR 0.25 TCGA-DD-AACL-01 19 50962198 50962198 C A MYBPC2 Missense_Mutation p.R844S 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AACL-01 19 51129240 51129240 A T SYT3 Missense_Mutation p.L439H 0.19 deleterious(0) probably_damaging(0.943) TCGA-DD-AACL-01 19 51470458 51470458 A T KLK6 Missense_Mutation p.L55Q 0.20 tolerated(1) benign(0.009) TCGA-DD-AACL-01 19 51841247 51841247 C T VSIG10L Missense_Mutation p.G649R 0.21 deleterious(0.01) probably_damaging(1) TCGA-DD-AACL-01 19 52222631 52222631 G A HAS1 Missense_Mutation p.A177V 0.22 tolerated(0.2) benign(0.024) TCGA-DD-AACL-01 19 52888535 52888535 A T ZNF880 Nonsense_Mutation p.R568* 0.22 TCGA-DD-AACL-01 19 53473106 53473106 T A ZNF702P RNA 0.20 TCGA-DD-AACL-01 19 54965762 54965762 A T LENG8 Missense_Mutation p.S194C 0.14 deleterious(0.02) possibly_damaging(0.575) TCGA-DD-AACL-01 19 56413554 56413554 A T NLRP13 Missense_Mutation p.L879Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-DD-AACL-01 19 56520164 56520164 A T NLRP5 Silent p.P151P 0.17 TCGA-DD-AACL-01 19 57176467 57176467 A T ZNF835 Missense_Mutation p.C34S 0.12 tolerated(0.54) benign(0.001) TCGA-DD-AACL-01 19 58446590 58446590 G T ZNF418 5'UTR 0.29 TCGA-DD-AACL-01 19 58571397 58571397 A T ZNF135 Intron 0.25 TCGA-DD-AACL-01 19 7743420 7743420 C A CTD-3214H19.16 Silent p.G12G 0.30 TCGA-DD-AACL-01 19 9361792 9361792 A T OR7E24 Missense_Mutation p.T25S 0.20 deleterious(0.02) benign(0.196) TCGA-DD-AACL-01 1 11142771 11142771 T C EXOSC10 Silent p.Q418Q 0.18 TCGA-DD-AACL-01 1 117127378 117127378 T A IGSF3 Missense_Mutation p.S933C 0.28 deleterious(0.05) probably_damaging(0.976) TCGA-DD-AACL-01 1 13839491 13839491 A T LRRC38 Missense_Mutation p.W200R 0.23 deleterious(0) probably_damaging(0.999) TCGA-DD-AACL-01 1 14149768 14149768 G A PRDM2 3'UTR 0.22 TCGA-DD-AACL-01 1 151501990 151501990 A G CGN Silent p.Q687Q 0.37 TCGA-DD-AACL-01 1 152281864 152281864 A T FLG Missense_Mutation p.V1833E 0.27 benign(0.403) TCGA-DD-AACL-01 1 153391627 153391627 A T S100A7A Nonsense_Mutation p.K50* 0.36 TCGA-DD-AACL-01 1 155165894 155165894 T A THBS3 Missense_Mutation p.Q899L 0.12 tolerated(0.06) benign(0.103) TCGA-DD-AACL-01 1 155208337 155208337 T A GBA Missense_Mutation p.S187C 0.33 deleterious(0) possibly_damaging(0.753) TCGA-DD-AACL-01 1 161023128 161023128 A T ARHGAP30 Missense_Mutation p.M195K 0.38 deleterious(0.02) possibly_damaging(0.643) TCGA-DD-AACL-01 1 161968003 161968003 G A OLFML2B Silent p.S362S 0.17 TCGA-DD-AACL-01 1 167757387 167757387 A T MPZL1 3'UTR 0.39 TCGA-DD-AACL-01 1 200974470 200974470 A T KIF21B Missense_Mutation p.L233Q 0.36 deleterious(0) possibly_damaging(0.785) TCGA-DD-AACL-01 1 204923314 204923314 A T NFASC Splice_Site p.X72_splice 0.28 TCGA-DD-AACL-01 1 21799874 21799874 G T NBPF3 Nonsense_Mutation p.E246* 0.29 TCGA-DD-AACL-01 1 218609331 218609331 A T TGFB2 Silent p.T286T 0.15 TCGA-DD-AACL-01 1 2236002 2236002 A T SKI Missense_Mutation p.Q582L 0.17 deleterious(0.02) probably_damaging(0.978) TCGA-DD-AACL-01 1 228520596 228520596 A T OBSCN Missense_Mutation p.T6187S 0.17 probably_damaging(0.997) TCGA-DD-AACL-01 1 248458280 248458280 A T OR2T12 Missense_Mutation p.C201S 0.35 deleterious(0.01) probably_damaging(0.993) TCGA-DD-AACL-01 1 29189642 29189642 C T OPRD1 Silent p.D322D 0.39 TCGA-DD-AACL-01 1 29447259 29447260 - T TMEM200B 3'UTR 0.16 TCGA-DD-AACL-01 1 36226433 36226433 T A CLSPN Missense_Mutation p.K363N 0.11 tolerated(0.14) benign(0.003) TCGA-DD-AACL-01 1 76378494 76378494 A G MSH4 Missense_Mutation p.I911M 0.22 tolerated(0.35) benign(0.001) TCGA-DD-AACL-01 1 82456641 82456641 A T LPHN2 Missense_Mutation p.R1342W 0.18 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-DD-AACL-01 1 8384424 8384424 A T SLC45A1 Missense_Mutation p.D12V 0.24 deleterious_low_confidence(0.01) benign(0.046) TCGA-DD-AACL-01 1 92846304 92846304 A T RPAP2 Missense_Mutation p.Q571L 0.19 tolerated(0.66) possibly_damaging(0.503) TCGA-DD-AACL-01 1 94048433 94048433 C T BCAR3 Missense_Mutation p.E371K 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-DD-AACL-01 20 18534971 18534971 A T SEC23B Missense_Mutation p.Q695H 0.20 deleterious(0.03) benign(0.022) TCGA-DD-AACL-01 20 20601245 20601245 A T RALGAPA2 Silent p.A421A 0.24 TCGA-DD-AACL-01 20 280053 280053 A T ZCCHC3 3'UTR 0.24 TCGA-DD-AACL-01 20 30193298 30193298 T C ID1 Silent p.S36S 0.25 TCGA-DD-AACL-01 20 3652923 3652923 A T ADAM33 Silent p.P485P 0.24 TCGA-DD-AACL-01 20 42966048 42966048 T A R3HDML Missense_Mutation p.M84K 0.26 deleterious(0) probably_damaging(0.996) TCGA-DD-AACL-01 20 43355869 43355869 T A WISP2 Missense_Mutation p.L225Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-DD-AACL-01 20 43836884 43836884 A T SEMG1 Missense_Mutation p.S316C 0.23 tolerated(0.05) possibly_damaging(0.907) TCGA-DD-AACL-01 20 49366413 49366413 A T PARD6B Silent p.L169L 0.26 TCGA-DD-AACL-01 20 6064810 6064810 A T FERMT1 Missense_Mutation p.L532Q 0.26 deleterious(0) probably_damaging(0.992) TCGA-DD-AACL-01 21 19666925 19666925 T A TMPRSS15 Missense_Mutation p.H769L 0.23 tolerated(0.62) benign(0.016) TCGA-DD-AACL-01 21 30341864 30341864 A C LTN1 Missense_Mutation p.F458C 0.21 deleterious(0) probably_damaging(0.989) TCGA-DD-AACL-01 22 23162044 23162044 T A IGLV3-9 Missense_Mutation p.I46N 0.22 deleterious(0) possibly_damaging(0.886) TCGA-DD-AACL-01 22 23742039 23742039 A T ZDHHC8P1 RNA 0.44 TCGA-DD-AACL-01 22 26707784 26707784 A T SEZ6L Missense_Mutation p.T578S 0.27 tolerated(0.34) benign(0.277) TCGA-DD-AACL-01 22 32480985 32480985 G A SLC5A1 Missense_Mutation p.M328I 0.21 tolerated(0.5) benign(0.019) TCGA-DD-AACL-01 22 39016298 39016298 T A FAM227A Splice_Site p.X315_splice 0.19 TCGA-DD-AACL-01 22 39078326 39078326 A T TOMM22 Splice_Site p.X40_splice 0.23 TCGA-DD-AACL-01 22 40708618 40708618 A T TNRC6B Silent p.V1515V 0.20 TCGA-DD-AACL-01 2 101023082 101023082 A G CHST10 Missense_Mutation p.M19T 0.29 deleterious_low_confidence(0) benign(0.01) TCGA-DD-AACL-01 2 108488645 108488645 A T RGPD4 Silent p.I1395I 0.20 TCGA-DD-AACL-01 2 11798756 11798756 A T NTSR2 Missense_Mutation p.V361E 0.25 deleterious(0) benign(0.131) TCGA-DD-AACL-01 2 131981274 131981274 T A POTEE Silent p.A209A 0.22 TCGA-DD-AACL-01 2 138420981 138420981 A T THSD7B Missense_Mutation p.Y1499F 0.24 tolerated(0.19) unknown(0) TCGA-DD-AACL-01 2 152298453 152298453 A T RIF1 Missense_Mutation p.Q561L 0.25 tolerated(0.12) benign(0.258) TCGA-DD-AACL-01 2 15374696 15374696 G A NBAS Missense_Mutation p.A2040V 0.07 deleterious(0) possibly_damaging(0.772) TCGA-DD-AACL-01 2 160086384 160086384 G T TANC1 Missense_Mutation p.V1483F 0.25 tolerated_low_confidence(0.71) benign(0.09) TCGA-DD-AACL-01 2 160873149 160873149 A T PLA2R1 Silent p.S509S 0.21 TCGA-DD-AACL-01 2 165987869 165987869 T G SCN3A Missense_Mutation p.Y817S 0.23 deleterious(0) possibly_damaging(0.688) TCGA-DD-AACL-01 2 170361124 170361124 A T BBS5 3'UTR 0.23 TCGA-DD-AACL-01 2 171705847 171705847 A T GAD1 Missense_Mutation p.N391Y 0.29 deleterious(0.03) possibly_damaging(0.797) TCGA-DD-AACL-01 2 178528616 178528616 C T PDE11A Missense_Mutation p.S875N 0.28 tolerated(0.05) possibly_damaging(0.587) TCGA-DD-AACL-01 2 179410419 179410419 A G TTN Silent p.T31806T 0.22 TCGA-DD-AACL-01 2 179644602 179644602 A T TTN Intron 0.19 TCGA-DD-AACL-01 2 180835257 180835257 T A CWC22 Missense_Mutation p.N394I 0.21 deleterious(0) possibly_damaging(0.759) TCGA-DD-AACL-01 2 183699694 183699694 T A FRZB Splice_Site p.X288_splice 0.40 TCGA-DD-AACL-01 2 197540923 197540923 A T CCDC150 Silent p.A398A 0.25 TCGA-DD-AACL-01 2 204309510 204309510 G A RAPH1 Intron 0.22 TCGA-DD-AACL-01 2 210560487 210560487 A T MAP2 Missense_Mutation p.Q1198L 0.24 tolerated_low_confidence(0.06) benign(0.41) TCGA-DD-AACL-01 2 210778581 210778581 T A UNC80 Missense_Mutation p.L1583Q 0.20 probably_damaging(0.996) TCGA-DD-AACL-01 2 210858068 210858068 A T UNC80 Missense_Mutation p.K3076N 0.22 probably_damaging(0.99) TCGA-DD-AACL-01 2 215840627 215840627 T A ABCA12 Missense_Mutation p.I1755F 0.31 deleterious(0) possibly_damaging(0.58) TCGA-DD-AACL-01 2 220194381 220194381 A T RESP18 Missense_Mutation p.L148H 0.23 deleterious_low_confidence(0.02) benign(0.046) TCGA-DD-AACL-01 2 222365815 222365815 A T EPHA4 Missense_Mutation p.W301R 0.15 tolerated(0.65) benign(0) TCGA-DD-AACL-01 2 223918077 223918077 T A KCNE4 3'UTR 0.20 TCGA-DD-AACL-01 2 27121452 27121452 T A DPYSL5 Missense_Mutation p.Y29N 0.18 deleterious(0) probably_damaging(0.995) TCGA-DD-AACL-01 2 44187687 44187687 T A LRPPRC Missense_Mutation p.L525F 0.16 tolerated(0.15) benign(0.028) TCGA-DD-AACL-01 2 54483166 54483166 A G TSPYL6 Silent p.D41D 0.22 TCGA-DD-AACL-01 2 74834195 74834195 A T M1AP Missense_Mutation p.D194E 0.29 tolerated(1) benign(0.002) TCGA-DD-AACL-01 2 89399592 89399592 T A IGKV1-16 Silent p.V37V 0.29 TCGA-DD-AACL-01 2 97373021 97373021 T A LMAN2L Missense_Mutation p.Q351L 0.23 deleterious(0.02) benign(0.333) TCGA-DD-AACL-01 2 99241978 99241978 T A MGAT4A 3'UTR 0.20 TCGA-DD-AACL-01 3 107766083 107766083 T C CD47 3'UTR 0.18 TCGA-DD-AACL-01 3 11302831 11302831 T A HRH1 3'UTR 0.28 TCGA-DD-AACL-01 3 11304359 11304359 T C HRH1 3'UTR 0.15 TCGA-DD-AACL-01 3 113218394 113218394 T A SPICE1 Missense_Mutation p.R61S 0.41 deleterious(0) probably_damaging(0.994) TCGA-DD-AACL-01 3 119133709 119133709 T A ARHGAP31 Missense_Mutation p.L978H 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-DD-AACL-01 3 119156670 119156670 T A TMEM39A Nonsense_Mutation p.K286* 0.20 TCGA-DD-AACL-01 3 121208682 121208682 T A POLQ Silent p.S1032S 0.17 TCGA-DD-AACL-01 3 130287376 130287376 T A COL6A6 Missense_Mutation p.Y777N 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AACL-01 3 130871532 130871543 TTACCTTGATGA - NEK11 In_Frame_Del p.Y286_E289del 0.14 TCGA-DD-AACL-01 3 151171236 151171236 A T IGSF10 Missense_Mutation p.H217Q 0.18 deleterious(0) possibly_damaging(0.772) TCGA-DD-AACL-01 3 155198967 155198967 A T PLCH1 Silent p.P1624P 0.37 TCGA-DD-AACL-01 3 155640020 155640020 A G GMPS Missense_Mutation p.I455V 0.33 tolerated(0.34) benign(0) TCGA-DD-AACL-01 3 193353249 193353249 A T OPA1 Nonsense_Mutation p.K278* 0.26 TCGA-DD-AACL-01 3 196096315 196096315 A G UBXN7 Missense_Mutation p.V228A 0.21 deleterious(0) possibly_damaging(0.852) TCGA-DD-AACL-01 3 196296086 196296086 G C FBXO45 Missense_Mutation p.E77D 0.23 tolerated(0.65) benign(0.005) TCGA-DD-AACL-01 3 197640825 197640825 T A IQCG Missense_Mutation p.N272I 0.27 deleterious(0.04) benign(0.052) TCGA-DD-AACL-01 3 40529425 40529425 A T ZNF619 Missense_Mutation p.Q515L 0.37 tolerated(0.22) benign(0.226) TCGA-DD-AACL-01 3 42730507 42730507 T A KLHL40 Missense_Mutation p.L523Q 0.27 deleterious(0) probably_damaging(0.933) TCGA-DD-AACL-01 3 4726008 4726008 A T ITPR1 Missense_Mutation p.Y1166F 0.15 tolerated(0.58) possibly_damaging(0.462) TCGA-DD-AACL-01 3 49069670 49069670 G C QRICH1 Missense_Mutation p.P695R 0.17 tolerated(0.08) probably_damaging(0.98) TCGA-DD-AACL-01 3 52794925 52794925 A G NEK4 Silent p.N283N 0.26 TCGA-DD-AACL-01 3 75484146 75484146 T A RP11-803B1.8 5'Flank 0.35 TCGA-DD-AACL-01 3 9784748 9784748 A T BRPF1 Missense_Mutation p.S708C 0.30 deleterious(0.01) benign(0.252) TCGA-DD-AACL-01 4 110882063 110882063 T A EGF Silent p.L369L 0.27 TCGA-DD-AACL-01 4 120072181 120072181 T A MYOZ2 Silent p.S77S 0.18 TCGA-DD-AACL-01 4 122789150 122789150 T A BBS7 Nonsense_Mutation p.R30* 0.30 TCGA-DD-AACL-01 4 138442493 138442493 T A PCDH18 Missense_Mutation p.N1033I 0.31 deleterious(0.04) benign(0.003) TCGA-DD-AACL-01 4 155156629 155156629 T A DCHS2 Missense_Mutation p.S2604C 0.32 deleterious(0.04) benign(0.379) TCGA-DD-AACL-01 4 189026498 189026498 A T TRIML2 5'UTR 0.33 TCGA-DD-AACL-01 4 40122815 40122815 A T N4BP2 Silent p.I1028I 0.26 TCGA-DD-AACL-01 4 47548881 47548881 T C ATP10D Splice_Site p.X545_splice 0.11 TCGA-DD-AACL-01 4 69434019 69434019 T A UGT2B17 Missense_Mutation p.I62F 0.47 tolerated(0.2) benign(0.048) TCGA-DD-AACL-01 4 90857648 90857648 A T MMRN1 Silent p.S939S 0.18 TCGA-DD-AACL-01 5 10465079 10465079 T A ROPN1L 3'UTR 0.19 TCGA-DD-AACL-01 5 11385034 11385034 A T CTNND2 Missense_Mutation p.L307Q 0.14 tolerated(0.05) possibly_damaging(0.682) TCGA-DD-AACL-01 5 133534792 133534792 G T PPP2CA Missense_Mutation p.T281N 0.21 tolerated(1) benign(0) TCGA-DD-AACL-01 5 133945262 133945262 T G SAR1B Missense_Mutation p.D116A 0.19 deleterious(0.03) benign(0.013) TCGA-DD-AACL-01 5 135651458 135651458 T A TRPC7 Missense_Mutation p.R264W 0.26 tolerated(0.17) possibly_damaging(0.874) TCGA-DD-AACL-01 5 13716756 13716756 T A DNAH5 Missense_Mutation p.Q4250L 0.29 benign(0.227) TCGA-DD-AACL-01 5 137754822 137754822 A T KDM3B Nonsense_Mutation p.K1206* 0.22 TCGA-DD-AACL-01 5 137895716 137895716 G A HSPA9 Missense_Mutation p.A416V 0.29 tolerated_low_confidence(0.55) probably_damaging(0.999) TCGA-DD-AACL-01 5 140165998 140165998 C A PCDHA1 Missense_Mutation p.H41Q 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.452) TCGA-DD-AACL-01 5 140175983 140175983 A T PCDHA2 Silent p.S478S 0.20 TCGA-DD-AACL-01 5 140208516 140208516 T A PCDHA6 Silent p.S280S 0.23 TCGA-DD-AACL-01 5 140515388 140515388 A T PCDHB5 Silent p.T124T 0.25 TCGA-DD-AACL-01 5 140530514 140530514 G A PCDHB6 Missense_Mutation p.E226K 0.21 tolerated_low_confidence(0.72) benign(0.001) TCGA-DD-AACL-01 5 140773294 140773294 A T PCDHGA8 Missense_Mutation p.K305I 0.21 deleterious_low_confidence(0.04) possibly_damaging(0.86) TCGA-DD-AACL-01 5 159776057 159776057 A G C1QTNF2 3'UTR 0.32 TCGA-DD-AACL-01 5 159831536 159831536 T A SLU7 Nonsense_Mutation p.K498* 0.15 TCGA-DD-AACL-01 5 169482326 169482326 G A DOCK2 Missense_Mutation p.V1411I 0.25 deleterious(0) possibly_damaging(0.772) TCGA-DD-AACL-01 5 19483513 19483513 T G CDH18 Missense_Mutation p.R593S 0.25 tolerated(1) benign(0.002) TCGA-DD-AACL-01 5 31322954 31322954 C T CDH6 Missense_Mutation p.R638W 0.22 deleterious(0) probably_damaging(0.998) TCGA-DD-AACL-01 5 31472271 31472271 C G DROSHA Missense_Mutation p.V714L 0.23 deleterious(0.05) benign(0.009) TCGA-DD-AACL-01 5 37049313 37049313 G A NIPBL Silent p.E2288E 0.22 TCGA-DD-AACL-01 5 52404403 52404403 T A MOCS2 5'UTR 0.23 TCGA-DD-AACL-01 5 61833050 61833050 T G IPO11 Silent p.G768G 0.20 TCGA-DD-AACL-01 5 7707845 7707845 T A ADCY2 Missense_Mutation p.L432Q 0.20 deleterious(0) probably_damaging(0.989) TCGA-DD-AACL-01 5 95249476 95249476 T A ELL2 Silent p.V160V 0.26 TCGA-DD-AACL-01 6 108492806 108492806 A T NR2E1 Missense_Mutation p.Q57L 0.18 deleterious(0.01) benign(0.079) TCGA-DD-AACL-01 6 116757981 116757981 A T DSE Nonsense_Mutation p.R784* 0.21 TCGA-DD-AACL-01 6 121770250 121770250 T C GJA1 3'UTR 0.17 TCGA-DD-AACL-01 6 132270673 132270673 T A CTGF Nonsense_Mutation p.K261* 0.20 TCGA-DD-AACL-01 6 146993419 146993419 A T ADGB Silent p.S301S 0.24 TCGA-DD-AACL-01 6 159459160 159459160 T A TAGAP Missense_Mutation p.H295L 0.19 deleterious(0.02) benign(0.157) TCGA-DD-AACL-01 6 165715248 165715248 T A C6orf118 Missense_Mutation p.Q188L 0.26 deleterious(0.04) benign(0.19) TCGA-DD-AACL-01 6 26022065 26022108 GGAGACTCGCGGGGTGCTCAAGGTGTTTTTGGAGAACGTGATCC - HIST1H4A Frame_Shift_Del p.E54* 0.08 TCGA-DD-AACL-01 6 26104224 26104224 A T HIST1H4C Nonsense_Mutation p.K17* 0.24 TCGA-DD-AACL-01 6 27775503 27775503 C A HIST1H2BL Missense_Mutation p.G61V 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.776) TCGA-DD-AACL-01 6 29429803 29429803 C A OR2H1 Missense_Mutation p.P86Q 0.24 deleterious(0.02) possibly_damaging(0.851) TCGA-DD-AACL-01 6 29574219 29574219 T A GABBR1 Missense_Mutation p.I754F 0.23 deleterious(0.04) possibly_damaging(0.717) TCGA-DD-AACL-01 6 29574242 29574242 G A GABBR1 Missense_Mutation p.P746L 0.20 deleterious(0.01) benign(0.281) TCGA-DD-AACL-01 6 30039168 30039168 A T RNF39 Missense_Mutation p.L328Q 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-DD-AACL-01 6 32013072 32013072 T A TNXB 5'UTR 0.15 TCGA-DD-AACL-01 6 34003952 34003952 A T GRM4 Silent p.A645A 0.22 TCGA-DD-AACL-01 6 36269635 36269635 T A PNPLA1 Intron 0.22 TCGA-DD-AACL-01 6 38749117 38749117 C T DNAH8 Missense_Mutation p.R526C 0.27 possibly_damaging(0.883) TCGA-DD-AACL-01 6 41162396 41162396 A T TREML2 Silent p.P184P 0.21 TCGA-DD-AACL-01 6 41309624 41309624 A T NCR2 Nonsense_Mutation p.R163* 0.23 TCGA-DD-AACL-01 6 43038459 43038459 A T KLC4 Silent p.A355A 0.24 TCGA-DD-AACL-01 6 46661686 46661686 A T TDRD6 Nonsense_Mutation p.R1941* 0.24 TCGA-DD-AACL-01 6 52103728 52103728 C T IL17F Silent p.S18S 0.20 TCGA-DD-AACL-01 6 6589096 6589096 G C LY86 Missense_Mutation p.Q43H 0.12 deleterious(0) probably_damaging(0.958) TCGA-DD-AACL-01 6 70942395 70942395 A T COL9A1 Silent p.P798P 0.20 TCGA-DD-AACL-01 6 72968769 72968769 A T RIMS1 Missense_Mutation p.H1003L 0.22 deleterious(0.02) benign(0.001) TCGA-DD-AACL-01 6 75893246 75893246 C A COL12A1 Nonsense_Mutation p.E471* 0.24 TCGA-DD-AACL-01 6 8413742 8413742 T A SLC35B3 3'UTR 0.27 TCGA-DD-AACL-01 6 87725224 87725224 A T HTR1E Missense_Mutation p.N58Y 0.20 deleterious(0) probably_damaging(1) TCGA-DD-AACL-01 6 89600237 89600237 T A RNGTT Silent p.V291V 0.27 TCGA-DD-AACL-01 6 99849420 99849420 T A PNISR Nonsense_Mutation p.R472* 0.18 TCGA-DD-AACL-01 7 105653379 105653379 A T CDHR3 Missense_Mutation p.S376C 0.27 tolerated(0.09) benign(0.048) TCGA-DD-AACL-01 7 107384552 107384552 T A CBLL1 5'UTR 0.30 TCGA-DD-AACL-01 7 116960675 116960675 T A WNT2 Missense_Mutation p.N86Y 0.22 deleterious(0) probably_damaging(0.947) TCGA-DD-AACL-01 7 123190558 123190558 T A NDUFA5 Missense_Mutation p.Q50L 0.25 deleterious(0.04) benign(0.014) TCGA-DD-AACL-01 7 127965868 127965868 T A RBM28 Intron 0.25 TCGA-DD-AACL-01 7 128141930 128141930 A T METTL2B Missense_Mutation p.Q366L 0.19 deleterious(0) probably_damaging(1) TCGA-DD-AACL-01 7 131833393 131833393 C T PLXNA4 Missense_Mutation p.G1558E 0.21 deleterious(0.01) benign(0.428) TCGA-DD-AACL-01 7 133749242 133749242 C A EXOC4 Silent p.I962I 0.23 TCGA-DD-AACL-01 7 134894482 134894482 T A WDR91 Missense_Mutation p.Q50L 0.24 tolerated(0.82) benign(0.002) TCGA-DD-AACL-01 7 141952124 141952124 A T PRSS58 Missense_Mutation p.C215S 0.28 deleterious(0) probably_damaging(0.999) TCGA-DD-AACL-01 7 158851257 158851257 T A VIPR2 Missense_Mutation p.I124F 0.18 tolerated(0.73) possibly_damaging(0.702) TCGA-DD-AACL-01 7 23164366 23164366 A T KLHL7 Missense_Mutation p.I95F 0.37 deleterious(0.04) possibly_damaging(0.537) TCGA-DD-AACL-01 7 27211677 27211677 A G HOXA10 Silent p.N358N 0.26 TCGA-DD-AACL-01 7 34889208 34889208 T G NPSR1 Intron 0.25 TCGA-DD-AACL-01 7 3658710 3658710 A T SDK1 Splice_Site p.X100_splice 0.24 TCGA-DD-AACL-01 7 48550698 48550698 G C ABCA13 Missense_Mutation p.V4515L 0.22 probably_damaging(0.961) TCGA-DD-AACL-01 7 51095925 51095925 G C COBL Silent p.G956G 0.18 TCGA-DD-AACL-01 7 64167010 64167010 A T ZNF107 Missense_Mutation p.S110C 0.16 deleterious(0.03) possibly_damaging(0.791) TCGA-DD-AACL-01 7 73520454 73520454 C T LIMK1 Silent p.L254L 0.26 TCGA-DD-AACL-01 7 73639059 73639059 C A LAT2 Missense_Mutation p.A240D 0.28 deleterious(0) possibly_damaging(0.879) TCGA-DD-AACL-01 7 77256052 77256052 A C PTPN12 Missense_Mutation p.E352D 0.27 tolerated(0.06) possibly_damaging(0.817) TCGA-DD-AACL-01 7 80117908 80117908 T A GNAT3 Silent p.L82L 0.22 TCGA-DD-AACL-01 7 81331975 81331975 A T HGF Silent p.P703P 0.22 TCGA-DD-AACL-01 7 82546002 82546002 T A PCLO Missense_Mutation p.D3767V 0.20 unknown(0) TCGA-DD-AACL-01 7 82595396 82595396 T A PCLO Silent p.L1236L 0.23 TCGA-DD-AACL-01 7 86394697 86394698 - C GRM3 Frame_Shift_Ins p.N80Qfs*4 0.17 TCGA-DD-AACL-01 7 94053728 94053728 T C COL1A2 Silent p.R882R 0.17 TCGA-DD-AACL-01 8 110439372 110439372 A T PKHD1L1 Missense_Mutation p.Q996L 0.29 tolerated(0.07) benign(0.026) TCGA-DD-AACL-01 8 11180466 11180466 A G MTMR9 3'UTR 0.30 TCGA-DD-AACL-01 8 113585883 113585883 A T CSMD3 Missense_Mutation p.Y1297N 0.14 deleterious(0) probably_damaging(0.959) TCGA-DD-AACL-01 8 113585884 113585884 A T CSMD3 Silent p.I1296I 0.14 TCGA-DD-AACL-01 8 120809963 120809963 T A TAF2 Missense_Mutation p.T306S 0.34 tolerated(0.15) possibly_damaging(0.474) TCGA-DD-AACL-01 8 124219614 124219614 T C FAM83A Missense_Mutation p.S331P 0.23 tolerated(0.43) benign(0.002) TCGA-DD-AACL-01 8 130774950 130774950 C G GSDMC Missense_Mutation p.V200L 0.14 tolerated(0.14) benign(0.346) TCGA-DD-AACL-01 8 131896933 131896933 A T ADCY8 Silent p.S662S 0.14 TCGA-DD-AACL-01 8 133036708 133036708 T C OC90 3'UTR 0.20 TCGA-DD-AACL-01 8 144358897 144358897 G T GLI4 Missense_Mutation p.A352S 0.29 tolerated(0.61) benign(0.047) TCGA-DD-AACL-01 8 145160983 145160983 A T MAF1 Missense_Mutation p.S73C 0.19 tolerated(0.09) benign(0.111) TCGA-DD-AACL-01 8 17088185 17088185 A T CNOT7 3'UTR 0.18 TCGA-DD-AACL-01 8 27294711 27294711 A G PTK2B Missense_Mutation p.M472V 0.25 deleterious(0.01) benign(0.002) TCGA-DD-AACL-01 8 28574021 28574021 A T EXTL3 Missense_Mutation p.N149Y 0.23 tolerated(0.06) probably_damaging(0.957) TCGA-DD-AACL-01 8 29195843 29195843 T A DUSP4 Missense_Mutation p.K252M 0.16 tolerated(0.29) probably_damaging(0.986) TCGA-DD-AACL-01 8 3266978 3266978 T A CSMD1 Missense_Mutation p.N571Y 0.15 probably_damaging(0.986) TCGA-DD-AACL-01 8 36768468 36768468 A T KCNU1 Silent p.G784G 0.32 TCGA-DD-AACL-01 8 49637189 49637189 T A EFCAB1 3'UTR 0.20 TCGA-DD-AACL-01 8 52361632 52361632 T G PXDNL Missense_Mutation p.E432D 0.24 tolerated(0.1) probably_damaging(0.995) TCGA-DD-AACL-01 8 53044593 53044593 T A ST18 Missense_Mutation p.Q864L 0.25 tolerated(0.06) probably_damaging(0.993) TCGA-DD-AACL-01 8 57287374 57287374 G T SDR16C6P RNA 0.24 TCGA-DD-AACL-01 8 6266840 6266840 A T MCPH1 Silent p.T21T 0.17 TCGA-DD-AACL-01 8 70501222 70501222 T A SULF1 Missense_Mutation p.L194I 0.18 deleterious(0.05) possibly_damaging(0.85) TCGA-DD-AACL-01 8 86193678 86193678 A T CA13 3'UTR 0.17 TCGA-DD-AACL-01 9 125240200 125240200 G T OR1J1 Missense_Mutation p.S2R 0.20 tolerated_low_confidence(1) benign(0) TCGA-DD-AACL-01 9 135977865 135977865 G A RALGDS Silent p.S669S 0.16 TCGA-DD-AACL-01 9 19786279 19786279 C A SLC24A2 Missense_Mutation p.V196L 0.20 deleterious(0) probably_damaging(0.954) TCGA-DD-AACL-01 9 21385351 21385351 A T IFNA2 5'UTR 0.28 TCGA-DD-AACL-01 9 33550549 33550549 A T ANKRD18B Missense_Mutation p.K668M 0.24 deleterious(0.02) probably_damaging(0.991) TCGA-DD-AACL-01 9 33927030 33927030 T C UBAP2 Missense_Mutation p.N807S 0.31 deleterious(0.03) unknown(0) TCGA-DD-AACL-01 9 84532904 84532904 T A SPATA31D5P RNA 0.19 TCGA-DD-AACL-01 9 88247600 88247600 T A AGTPBP1 Missense_Mutation p.L624F 0.24 deleterious(0.02) possibly_damaging(0.906) TCGA-DD-AACL-01 9 91619582 91619582 T A S1PR3 3'UTR 0.19 TCGA-DD-AACL-01 9 94486744 94486744 A T ROR2 Missense_Mutation p.Y678N 0.22 deleterious(0) probably_damaging(0.992) TCGA-DD-AACL-01 9 94495465 94495465 A T ROR2 Silent p.P292P 0.26 TCGA-DD-AACL-01 X 100265530 100265530 T A TRMT2B 3'UTR 0.17 TCGA-DD-AACL-01 X 10166045 10166045 G C CLCN4 Missense_Mutation p.A167P 0.24 deleterious(0) probably_damaging(0.991) TCGA-DD-AACL-01 X 102930861 102930861 A T MORF4L2 3'UTR 0.32 TCGA-DD-AACL-01 X 110644314 110644314 T A DCX Silent p.T284T 0.21 TCGA-DD-AACL-01 X 119390877 119390877 T A ZBTB33 3'UTR 0.22 TCGA-DD-AACL-01 X 12735864 12735864 T A FRMPD4 Silent p.A973A 0.27 TCGA-DD-AACL-01 X 134425482 134425482 A G ZNF75D Silent p.H204H 0.25 TCGA-DD-AACL-01 X 134990253 134990253 A - SAGE1 Frame_Shift_Del p.T389Pfs*40 0.15 TCGA-DD-AACL-01 X 140926154 140926154 T A MAGEC3 Missense_Mutation p.L18Q 0.22 deleterious_low_confidence(0) possibly_damaging(0.766) TCGA-DD-AACL-01 X 153042749 153042749 G T PLXNB3 Missense_Mutation p.V1695L 0.19 tolerated(0.43) benign(0.062) TCGA-DD-AACL-01 X 18606148 18606148 T C CDKL5 Missense_Mutation p.L210S 0.22 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-DD-AACL-01 X 30254845 30254845 T A MAGEB3 Silent p.P268P 0.24 TCGA-DD-AACL-01 X 32659594 32659594 A T DMD Intron 0.29 TCGA-DD-AACL-01 X 36379611 36379611 A T CXorf30 Silent p.P452P 0.21 TCGA-DD-AACL-01 X 37285109 37285109 A G PRRG1 Silent p.E9E 0.22 TCGA-DD-AACL-01 X 38145017 38145017 T A RPGR Missense_Mutation p.R1079W 0.18 unknown(0) TCGA-DD-AACL-01 X 43656381 43656381 A T MAOB Missense_Mutation p.N203K 0.26 deleterious(0.04) possibly_damaging(0.627) TCGA-DD-AACL-01 X 48123234 48123234 A T SSX1 Silent p.P116P 0.22 TCGA-DD-AACL-01 X 48761808 48761808 A T SLC35A2 Intron 0.23 TCGA-DD-AACL-01 X 49067844 49067844 T A CACNA1F Missense_Mutation p.T1411S 0.22 tolerated(0.26) benign(0.293) TCGA-DD-AACL-01 X 53619443 53619443 T A HUWE1 Missense_Mutation p.E1296V 0.21 benign(0.145) TCGA-DD-AACL-01 X 54956640 54956640 T C TRO Silent p.S1161S 0.30 TCGA-DD-AACL-01 X 62855277 62855277 A T ARHGEF9 3'UTR 0.20 TCGA-DD-AACL-01 X 68060572 68060572 T A EFNB1 3'UTR 0.17 TCGA-DD-AACL-01 X 69749740 69749740 A C TEX11 Missense_Mutation p.L892R 0.19 deleterious(0) probably_damaging(0.951) TCGA-DD-AACL-01 X 69964041 69964041 T C TEX11 Missense_Mutation p.K256E 0.19 tolerated(0.47) benign(0.081) TCGA-DD-AACL-01 X 70330769 70330769 T A IL2RG Missense_Mutation p.T83S 0.24 tolerated(0.12) benign(0.012) TCGA-DD-AACL-01 X 70836820 70836820 C T CXCR3 Missense_Mutation p.V215M 0.25 tolerated(0.09) possibly_damaging(0.705) TCGA-DD-AACL-01 X 72092154 72092154 A T DMRTC1 3'UTR 0.22 TCGA-DD-AACL-01 X 79698650 79698650 T G FAM46D Silent p.A204A 0.24 TCGA-DD-AACL-01 X 8764335 8764335 A T FAM9A Silent p.R154R 0.24 TCGA-DD-AACL-01 X 91132904 91132904 A T PCDH11X Silent p.T555T 0.26 TCGA-DD-AACM-01 10 129901847 129901847 C G MKI67 Missense_Mutation p.D2753H 0.47 tolerated(0.37) benign(0.037) TCGA-DD-AACM-01 10 17905633 17905633 C T MRC1L1 Missense_Mutation p.T575I 0.19 benign(0.275) TCGA-DD-AACM-01 10 75276875 75276875 T G USP54 Missense_Mutation p.K1103N 0.23 deleterious_low_confidence(0) benign(0.147) TCGA-DD-AACM-01 10 75519919 75519919 C T SEC24C Nonsense_Mutation p.Q209* 0.24 TCGA-DD-AACM-01 11 115047195 115047195 T A CADM1 Nonstop_Mutation p.*443Lext*15 0.28 TCGA-DD-AACM-01 11 117375644 117375644 G A DSCAML1 Missense_Mutation p.A786V 0.23 deleterious(0) possibly_damaging(0.708) TCGA-DD-AACM-01 11 56510313 56510313 T C OR9G4 Silent p.P325P 0.24 TCGA-DD-AACM-01 11 58345512 58345512 G A LPXN Missense_Mutation p.T3I 0.27 tolerated_low_confidence(0.1) benign(0) TCGA-DD-AACM-01 11 62437490 62437494 GGCAC T C11orf48 Frame_Shift_Del p.V4Kfs*64 0.30 TCGA-DD-AACM-01 11 75146556 75146556 C T GDPD5 Missense_Mutation p.R605H 0.17 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-DD-AACM-01 12 100041989 100041989 C T FAM71C Nonsense_Mutation p.Q13* 0.31 TCGA-DD-AACM-01 12 125451681 125451681 C A DHX37 Missense_Mutation p.A498S 0.28 tolerated(0.84) benign(0.002) TCGA-DD-AACM-01 12 53590523 53590523 C T ITGB7 Missense_Mutation p.R219Q 0.24 deleterious(0.03) probably_damaging(0.997) TCGA-DD-AACM-01 12 56999067 56999067 A G BAZ2A Silent p.S848S 0.23 TCGA-DD-AACM-01 12 56999078 56999078 T G BAZ2A Missense_Mutation p.T845P 0.18 deleterious(0.01) benign(0.115) TCGA-DD-AACM-01 12 56999094 56999094 T G BAZ2A Silent p.S839S 0.17 TCGA-DD-AACM-01 12 57586981 57586981 A G LRP1 Silent p.A2526A 0.18 TCGA-DD-AACM-01 14 44975143 44975143 T C FSCB Missense_Mutation p.I350V 0.28 tolerated(0.9) benign(0.019) TCGA-DD-AACM-01 14 75485660 75485678 GGCCATCATTAAACTTAAT - MLH3 Frame_Shift_Del p.I1366* 0.27 TCGA-DD-AACM-01 15 28447357 28447357 C T HERC2 Missense_Mutation p.D2507N 0.28 benign(0.015) TCGA-DD-AACM-01 15 28501325 28501325 C A HERC2 Missense_Mutation p.A886S 0.22 probably_damaging(0.954) TCGA-DD-AACM-01 16 20373766 20373766 C T PDILT Missense_Mutation p.R459Q 0.24 tolerated(0.13) benign(0.041) TCGA-DD-AACM-01 16 31477741 31477741 G T ARMC5 Missense_Mutation p.G780V 0.08 deleterious(0) probably_damaging(1) TCGA-DD-AACM-01 16 68771270 68771270 G A CDH1 5'UTR 0.50 TCGA-DD-AACM-01 17 18654340 18654340 C A FBXW10 Missense_Mutation p.H366N 0.38 tolerated(1) benign(0) TCGA-DD-AACM-01 17 20919117 20919117 G A USP22 Silent p.D262D 0.44 TCGA-DD-AACM-01 17 21075458 21075458 C G DHRS7B Missense_Mutation p.L50V 0.44 tolerated(0.08) benign(0.011) TCGA-DD-AACM-01 17 29657472 29657483 CGTTAGAATTTT - NF1 In_Frame_Del p.T1923_L1927delinsM 0.24 TCGA-DD-AACM-01 17 49710849 49710849 G A CA10 Missense_Mutation p.L318F 0.32 tolerated(0.17) possibly_damaging(0.768) TCGA-DD-AACM-01 17 56429508 56429508 G A SUPT4H1 5'UTR 0.28 TCGA-DD-AACM-01 17 61972338 61972338 C A CSH1 3'UTR 0.44 TCGA-DD-AACM-01 17 65905802 65905802 A G BPTF Missense_Mutation p.K973E 0.25 benign(0.284) TCGA-DD-AACM-01 17 71361407 71361407 G A SDK2 Silent p.S1765S 0.50 TCGA-DD-AACM-01 17 7576854 7576860 TGAAGGG - TP53 Frame_Shift_Del p.T329Rfs*14 0.42 TCGA-DD-AACM-01 19 46891672 46891672 G A PPP5C Missense_Mutation p.M381I 0.34 deleterious(0.02) benign(0.39) TCGA-DD-AACM-01 19 52147072 52147072 C T SIGLEC14 Silent p.P324P 0.28 TCGA-DD-AACM-01 19 57065248 57065248 A T ZFP28 Missense_Mutation p.N365I 0.50 tolerated(0.27) benign(0.231) TCGA-DD-AACM-01 1 149895819 149895819 G C SF3B4 Missense_Mutation p.P334R 0.27 tolerated(0.27) unknown(0) TCGA-DD-AACM-01 1 167407853 167407853 A G CD247 Missense_Mutation p.V85A 0.25 tolerated(0.3) benign(0.052) TCGA-DD-AACM-01 1 17586148 17586148 G A PADI3 Missense_Mutation p.M56I 0.36 tolerated(0.44) benign(0.013) TCGA-DD-AACM-01 1 248367150 248367150 C T OR2M3 Missense_Mutation p.R261W 0.29 deleterious(0.04) benign(0.005) TCGA-DD-AACM-01 22 25960978 25960980 CCG - ADRBK2 5'UTR 0.17 TCGA-DD-AACM-01 22 32620469 32620469 C A SLC5A4 Nonsense_Mutation p.G484* 0.31 TCGA-DD-AACM-01 22 39387543 39387543 C G APOBEC3B Silent p.A310A 0.19 TCGA-DD-AACM-01 2 27931241 27931241 G A AC074091.13 5'UTR 0.29 TCGA-DD-AACM-01 2 54786000 54786000 G A SPTBN1 Intron 0.29 TCGA-DD-AACM-01 2 73786123 73786123 A G ALMS1 Missense_Mutation p.E3412G 0.05 benign(0.1) TCGA-DD-AACM-01 2 97354959 97354959 C A FER1L5 RNA 0.31 TCGA-DD-AACM-01 3 111705759 111705759 A G ABHD10 Splice_Site p.X147_splice 0.25 TCGA-DD-AACM-01 3 12225144 12225144 G A SYN2 RNA 0.62 TCGA-DD-AACM-01 3 131388547 131388547 C T CPNE4 Missense_Mutation p.C218Y 0.23 deleterious(0) possibly_damaging(0.745) TCGA-DD-AACM-01 3 14174384 14174384 A G TMEM43 Missense_Mutation p.E154G 0.30 deleterious(0.02) benign(0.426) TCGA-DD-AACM-01 3 178916726 178916726 G A PIK3CA Missense_Mutation p.R38H 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AACM-01 3 179474892 179474892 A T USP13 Intron 0.21 TCGA-DD-AACM-01 3 52847499 52847499 T G ITIH4 Silent p.R911R 0.32 TCGA-DD-AACM-01 4 111543738 111543738 G A PITX2 5'UTR 0.30 TCGA-DD-AACM-01 4 123275094 123275094 C T KIAA1109 Missense_Mutation p.R4743C 0.41 probably_damaging(0.985) TCGA-DD-AACM-01 4 141464674 141464674 T C ELMOD2 Silent p.L224L 0.42 TCGA-DD-AACM-01 4 183721165 183721165 C T TENM3 Silent p.N2587N 0.37 TCGA-DD-AACM-01 4 20552501 20552502 TC - SLIT2 Frame_Shift_Del p.L848Ffs*16 0.29 TCGA-DD-AACM-01 4 44631421 44631421 A G YIPF7 Missense_Mutation p.L166P 0.05 deleterious(0) probably_damaging(0.989) TCGA-DD-AACM-01 4 5053565 5053565 T C STK32B 5'UTR 0.07 TCGA-DD-AACM-01 5 115177201 115177201 C A ATG12 Missense_Mutation p.A17S 0.25 tolerated(0.52) benign(0.01) TCGA-DD-AACM-01 5 140516915 140516915 C T PCDHB5 Silent p.D633D 0.06 TCGA-DD-AACM-01 5 153857205 153857205 G C HAND1 Missense_Mutation p.P122A 0.29 deleterious(0) probably_damaging(1) TCGA-DD-AACM-01 5 168180048 168180048 T A SLIT3 Missense_Mutation p.S629C 0.34 deleterious(0.01) possibly_damaging(0.618) TCGA-DD-AACM-01 6 123868487 123868487 T G TRDN Missense_Mutation p.K141T 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-DD-AACM-01 6 139164328 139164328 C T ECT2L Silent p.C185C 0.31 TCGA-DD-AACM-01 6 159456896 159456896 G A TAGAP Missense_Mutation p.A720V 0.27 tolerated(1) benign(0.026) TCGA-DD-AACM-01 6 29599329 29599329 C T GABBR1 Missense_Mutation p.G45S 0.04 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-DD-AACM-01 6 6145824 6145824 C T F13A1 3'UTR 0.24 TCGA-DD-AACM-01 6 70890211 70890211 C T COL19A1 Missense_Mutation p.P892L 0.34 deleterious(0.01) probably_damaging(0.978) TCGA-DD-AACM-01 7 100344192 100344192 T C ZAN Silent p.N266N 0.24 TCGA-DD-AACM-01 7 100465851 100465851 G C TRIP6 Missense_Mutation p.R120P 0.23 tolerated(0.33) possibly_damaging(0.586) TCGA-DD-AACM-01 7 113558267 113558267 C A PPP1R3A Intron 0.36 TCGA-DD-AACM-01 7 1477547 1477547 T A MICALL2 Missense_Mutation p.Q794L 0.28 tolerated(1) benign(0.015) TCGA-DD-AACM-01 7 1785451 1785451 G A ELFN1 Missense_Mutation p.G407S 0.26 tolerated(0.16) benign(0.287) TCGA-DD-AACM-01 8 145698094 145698094 C A KIFC2 Intron 0.08 TCGA-DD-AACM-01 8 19315958 19315958 C T CSGALNACT1 Missense_Mutation p.R277Q 0.40 tolerated(0.27) benign(0.089) TCGA-DD-AACM-01 9 115567201 115567201 A T SNX30 Missense_Mutation p.H101L 0.38 deleterious(0) probably_damaging(1) TCGA-DD-AACM-01 9 35740607 35740607 G C GBA2 Missense_Mutation p.H349D 0.27 tolerated(0.08) benign(0.219) TCGA-DD-AACM-01 9 43861205 43861205 A C CNTNAP3B Silent p.R693R 0.24 TCGA-DD-AACM-01 X 144910108 144910108 C T TMEM257 3'UTR 0.18 TCGA-DD-AACM-01 X 43634423 43634423 T A MAOB Missense_Mutation p.R412W 0.57 deleterious(0) probably_damaging(0.986) TCGA-DD-AACN-01 10 105037504 105037504 G T INA Missense_Mutation p.R179L 0.17 deleterious(0.01) benign(0.206) TCGA-DD-AACN-01 10 11912001 11912001 G A PROSER2 Missense_Mutation p.A302T 0.50 tolerated(0.65) benign(0.002) TCGA-DD-AACN-01 10 135340900 135340900 A G CYP2E1 Translation_Start_Site p.M1? 0.21 deleterious(0.01) benign(0.156) TCGA-DD-AACN-01 10 21120513 21120513 C T NEBL Splice_Site p.X484_splice 0.24 TCGA-DD-AACN-01 11 120175898 120175898 C T POU2F3 Missense_Mutation p.R204C 0.08 deleterious(0.01) probably_damaging(1) TCGA-DD-AACN-01 11 47201777 47201777 A T PACSIN3 Missense_Mutation p.L188Q 0.47 deleterious(0) benign(0.4) TCGA-DD-AACN-01 11 89028410 89028410 C T TYR Missense_Mutation p.T489I 0.17 tolerated(0.1) benign(0.006) TCGA-DD-AACN-01 12 118480654 118480654 T C WSB2 Missense_Mutation p.N184S 0.25 tolerated(0.58) benign(0) TCGA-DD-AACN-01 12 123186597 123186597 G A HCAR2 3'UTR 0.18 TCGA-DD-AACN-01 12 124498086 124498086 A T ZNF664 3'UTR 0.27 TCGA-DD-AACN-01 12 50264161 50264161 G A FAIM2 3'UTR 0.15 TCGA-DD-AACN-01 12 68054609 68054609 G T DYRK2 3'UTR 0.18 TCGA-DD-AACN-01 13 73327942 73327942 C G BORA Missense_Mutation p.Q533E 0.58 deleterious_low_confidence(0.03) benign(0.197) TCGA-DD-AACN-01 16 49407994 49407994 T A C16orf78 Silent p.A48A 0.60 TCGA-DD-AACN-01 16 50368752 50368752 T - BRD7 Frame_Shift_Del p.T253Lfs*59 0.33 TCGA-DD-AACN-01 16 67974099 67974099 G A LCAT Missense_Mutation p.P344L 0.37 deleterious(0.02) benign(0.082) TCGA-DD-AACN-01 16 69318053 69318053 C T SNTB2 Silent p.F417F 0.27 TCGA-DD-AACN-01 17 73106617 73106617 G A ARMC7 Missense_Mutation p.E51K 0.19 tolerated(0.34) benign(0.006) TCGA-DD-AACN-01 19 12502099 12502099 C A ZNF799 Silent p.G371G 0.07 TCGA-DD-AACN-01 19 13915863 13915863 C T ZSWIM4 Nonsense_Mutation p.Q205* 0.17 TCGA-DD-AACN-01 19 19654191 19654191 G A CILP2 Missense_Mutation p.G371D 0.34 tolerated(0.34) benign(0.259) TCGA-DD-AACN-01 19 3783153 3783153 G C MATK Missense_Mutation p.T217S 0.14 tolerated(0.43) benign(0.014) TCGA-DD-AACN-01 19 55713508 55713508 C G PTPRH Missense_Mutation p.E357Q 0.30 benign(0.173) TCGA-DD-AACN-01 19 58048662 58048662 G T ZNF549 Missense_Mutation p.G97V 0.32 tolerated(0.14) benign(0.002) TCGA-DD-AACN-01 1 102290723 102290723 T C OLFM3 Missense_Mutation p.T151A 0.63 tolerated(0.75) benign(0.016) TCGA-DD-AACN-01 1 1132542 1132542 C T TTLL10 Missense_Mutation p.P530S 0.57 deleterious(0) probably_damaging(1) TCGA-DD-AACN-01 1 11584022 11584022 A T PTCHD2 Missense_Mutation p.S796C 0.63 tolerated(0.06) possibly_damaging(0.702) TCGA-DD-AACN-01 1 154516919 154516919 G A TDRD10 Silent p.E241E 0.13 TCGA-DD-AACN-01 1 196394993 196394993 T C KCNT2 Silent p.L370L 0.28 TCGA-DD-AACN-01 1 197390426 197390426 G T CRB1 Missense_Mutation p.G490C 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-DD-AACN-01 1 206331355 206331355 T C CTSE 3'UTR 0.07 TCGA-DD-AACN-01 1 209807908 209807908 C T LAMB3 Missense_Mutation p.A150T 0.64 deleterious(0) probably_damaging(0.991) TCGA-DD-AACN-01 1 6630983 6630983 A T TAS1R1 Missense_Mutation p.N69I 0.07 deleterious(0) probably_damaging(0.954) TCGA-DD-AACN-01 21 28338041 28338041 C T ADAMTS5 Missense_Mutation p.A224T 0.07 tolerated(0.55) benign(0.001) TCGA-DD-AACN-01 22 45075540 45075540 C T PRR5 5'UTR 0.36 TCGA-DD-AACN-01 2 131520231 131520231 C T AMER3 Missense_Mutation p.R196W 0.21 deleterious(0) probably_damaging(0.91) TCGA-DD-AACN-01 3 151056067 151056067 T C P2RY12 Missense_Mutation p.I189M 0.20 tolerated(0.08) benign(0.11) TCGA-DD-AACN-01 3 180324113 180324113 G C TTC14 Missense_Mutation p.L334F 0.35 deleterious(0) probably_damaging(1) TCGA-DD-AACN-01 4 42524292 42524292 A G ATP8A1 Missense_Mutation p.V611A 0.13 tolerated(0.18) probably_damaging(0.992) TCGA-DD-AACN-01 4 47565604 47565604 C T ATP10D Missense_Mutation p.T892I 0.05 deleterious(0) probably_damaging(0.998) TCGA-DD-AACN-01 4 55569979 55569979 T C KIT Silent p.V282V 0.61 TCGA-DD-AACN-01 4 6037770 6037770 C T JAKMIP1 Missense_Mutation p.G747D 0.25 deleterious(0.02) benign(0.054) TCGA-DD-AACN-01 4 74272457 74272458 TG C ALB Frame_Shift_Del p.E84Kfs*57 0.36 TCGA-DD-AACN-01 4 96141175 96141175 C T UNC5C Missense_Mutation p.G421R 0.51 deleterious(0.04) probably_damaging(0.963) TCGA-DD-AACN-01 5 10250466 10250466 G T CCT5 Missense_Mutation p.G5V 0.33 deleterious(0.01) possibly_damaging(0.887) TCGA-DD-AACN-01 5 112238198 112238198 C T REEP5 Missense_Mutation p.S77N 0.16 deleterious(0) probably_damaging(0.999) TCGA-DD-AACN-01 5 16477816 16477816 A T FAM134B Missense_Mutation p.F319I 0.20 deleterious(0) probably_damaging(0.998) TCGA-DD-AACN-01 5 167379806 167379806 G A TENM2 Missense_Mutation p.S309N 0.38 deleterious(0) probably_damaging(0.999) TCGA-DD-AACN-01 5 41015522 41015522 G T MROH2B Missense_Mutation p.D981E 0.05 tolerated(0.08) possibly_damaging(0.647) TCGA-DD-AACN-01 5 52367816 52367816 C A ITGA2 Missense_Mutation p.L762M 0.22 tolerated(0.05) probably_damaging(0.989) TCGA-DD-AACN-01 5 90159649 90159649 T C GPR98 Missense_Mutation p.M5944T 0.57 possibly_damaging(0.537) TCGA-DD-AACN-01 6 27223091 27223091 C A PRSS16 Silent p.V514V 0.29 TCGA-DD-AACN-01 6 75974997 75974997 C T TMEM30A Missense_Mutation p.V135M 0.68 tolerated(0.09) probably_damaging(0.999) TCGA-DD-AACN-01 7 135376542 135376542 C T SLC13A4 Intron 0.34 TCGA-DD-AACN-01 7 150070547 150070548 GC - REPIN1 3'Flank 0.31 TCGA-DD-AACN-01 7 4308165 4308165 G A SDK1 3'UTR 0.30 TCGA-DD-AACN-01 8 133008691 133008691 A G EFR3A Missense_Mutation p.T702A 0.61 tolerated(0.1) benign(0.16) TCGA-DD-AACN-01 8 146016689 146016689 T A RPL8 Missense_Mutation p.I158F 0.18 tolerated(0.3) benign(0.066) TCGA-DD-AACN-01 8 39467002 39467002 A T ADAM18 Splice_Site p.X90_splice 0.59 TCGA-DD-AACN-01 8 48846651 48846651 C T PRKDC Splice_Site p.X500_splice 0.72 TCGA-DD-AACN-01 9 138662763 138662763 G T KCNT1 Silent p.P610P 0.19 TCGA-DD-AACN-01 9 25678668 25678668 C T TUSC1 5'UTR 0.41 TCGA-DD-AACN-01 9 8341939 8341939 A G PTPRD Silent p.D1567D 0.42 TCGA-DD-AACO-01 10 72326463 72326463 C T PALD1 Missense_Mutation p.P849S 0.55 tolerated_low_confidence(0.07) benign(0.023) TCGA-DD-AACO-01 12 122657036 122657036 T C IL31 Missense_Mutation p.I140V 0.35 tolerated(0.41) benign(0.147) TCGA-DD-AACO-01 12 24048957 24048957 T C SOX5 Missense_Mutation p.M14V 0.38 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-DD-AACO-01 13 72440337 72440337 T C DACH1 Missense_Mutation p.K191E 0.73 possibly_damaging(0.458) TCGA-DD-AACO-01 14 23512059 23512059 G A PSMB11 Missense_Mutation p.V209M 0.58 deleterious(0) probably_damaging(1) TCGA-DD-AACO-01 14 24675036 24675036 T G TSSK4 5'UTR 0.37 TCGA-DD-AACO-01 14 96779699 96779699 T C ATG2B Missense_Mutation p.H1239R 0.39 deleterious(0) probably_damaging(0.991) TCGA-DD-AACO-01 15 44194417 44194418 - T FRMD5 Frame_Shift_Ins p.A199Sfs*15 0.32 TCGA-DD-AACO-01 15 44849749 44849749 G T EIF3J Nonsense_Mutation p.E158* 0.35 TCGA-DD-AACO-01 15 49033772 49033772 C G CEP152 Intron 0.12 TCGA-DD-AACO-01 15 68583790 68583790 C G FEM1B 3'UTR 0.50 TCGA-DD-AACO-01 16 84228736 84228736 G T ADAD2 Silent p.L295L 0.64 TCGA-DD-AACO-01 17 42289011 42289011 T G UBTF Missense_Mutation p.Q337P 0.37 tolerated(0.06) benign(0.247) TCGA-DD-AACO-01 18 14763706 14763706 C T ANKRD30B Missense_Mutation p.P281L 0.42 deleterious(0.02) benign(0.046) TCGA-DD-AACO-01 18 55816800 55816800 C T NEDD4L Intron 0.71 TCGA-DD-AACO-01 19 10600016 10600019 ATAG - KEAP1 Frame_Shift_Del p.I519Mfs*12 0.58 TCGA-DD-AACO-01 19 38703032 38703032 C T DPF1 Intron 0.36 TCGA-DD-AACO-01 19 49399799 49399816 TTCAAACAGCCGCCGCTG - TULP2 Splice_Site p.X29_splice 0.34 TCGA-DD-AACO-01 19 9076110 9076110 G C MUC16 Missense_Mutation p.S3779C 0.64 unknown(0) TCGA-DD-AACO-01 1 114254606 114254606 C A PHTF1 Missense_Mutation p.V305F 0.57 tolerated(0.19) benign(0.001) TCGA-DD-AACO-01 1 16060475 16060475 C T PLEKHM2 3'UTR 0.59 TCGA-DD-AACO-01 1 163038666 163038666 G T RGS4 5'UTR 0.59 TCGA-DD-AACO-01 1 179609571 179609571 A G TDRD5 Silent p.R597R 0.27 TCGA-DD-AACO-01 1 200946498 200946498 C A KIF21B Silent p.S1389S 0.53 TCGA-DD-AACO-01 1 201017755 201017755 T A CACNA1S Missense_Mutation p.T1466S 0.58 deleterious(0) probably_damaging(0.965) TCGA-DD-AACO-01 1 205499790 205499790 C T CDK18 Silent p.L479L 0.30 TCGA-DD-AACO-01 1 242035468 242035468 A G EXO1 Missense_Mutation p.T468A 0.34 tolerated(0.85) benign(0) TCGA-DD-AACO-01 1 71318273 71318273 C A PTGER3 3'UTR 0.66 TCGA-DD-AACO-01 20 44451995 44451995 C G TNNC2 Missense_Mutation p.V159L 0.51 tolerated(0.09) benign(0.073) TCGA-DD-AACO-01 21 31973505 31973505 T A KRTAP22-1 Nonsense_Mutation p.Y22* 0.26 TCGA-DD-AACO-01 22 25308673 25308673 G A SGSM1 Missense_Mutation p.G1016E 0.11 deleterious(0) probably_damaging(0.999) TCGA-DD-AACO-01 22 50469294 50469294 T A TTLL8 Missense_Mutation p.R606W 0.47 deleterious(0.03) benign(0.062) TCGA-DD-AACO-01 2 120932617 120932617 G T EPB41L5 3'UTR 0.33 TCGA-DD-AACO-01 2 178097059 178097059 A G NFE2L2 Intron 0.48 TCGA-DD-AACO-01 2 207172701 207172701 T C ZDBF2 Missense_Mutation p.V1150A 0.39 tolerated(0.23) benign(0.153) TCGA-DD-AACO-01 2 234360641 234360641 C T DGKD Silent p.P733P 0.39 TCGA-DD-AACO-01 3 111312597 111312597 A G ZBED2 Missense_Mutation p.L151S 0.34 tolerated(0.09) benign(0.021) TCGA-DD-AACO-01 3 125856710 125856710 C A ALDH1L1 Silent p.L400L 0.33 TCGA-DD-AACO-01 3 142987725 142987725 C A SLC9A9 Missense_Mutation p.A568S 0.48 tolerated(0.05) probably_damaging(0.996) TCGA-DD-AACO-01 3 146234856 146234856 G T PLSCR1 Silent p.I279I 0.18 TCGA-DD-AACO-01 3 15115634 15115634 C A ZFYVE20 Missense_Mutation p.E670D 0.46 tolerated_low_confidence(0.23) benign(0.003) TCGA-DD-AACO-01 3 158531837 158531837 C T MFSD1 Silent p.L260L 0.59 TCGA-DD-AACO-01 3 195512126 195512126 G T MUC4 Missense_Mutation p.H2109N 0.11 unknown(0) TCGA-DD-AACO-01 3 74411040 74411040 C T CNTN3 Splice_Site p.X455_splice 0.41 TCGA-DD-AACO-01 4 25314444 25314444 A C ZCCHC4 Silent p.R5R 0.44 TCGA-DD-AACO-01 4 74272435 74272440 CATGTG - ALB In_Frame_Del p.T76_V78delinsI 0.27 TCGA-DD-AACO-01 4 74286007 74286007 G - ALB Frame_Shift_Del p.G608Afs*35 0.33 TCGA-DD-AACO-01 5 112769423 112769423 C T TSSK1B 3'UTR 0.13 TCGA-DD-AACO-01 5 140532804 140532805 - T PCDHB6 3'UTR 0.29 TCGA-DD-AACO-01 5 176306745 176306745 A T UNC5A Missense_Mutation p.K796M 0.18 deleterious(0) probably_damaging(1) TCGA-DD-AACO-01 5 179274998 179274998 T G C5orf45 Missense_Mutation p.Q65H 0.39 deleterious(0) probably_damaging(1) TCGA-DD-AACO-01 5 54529209 54529209 G - CCNO Frame_Shift_Del p.P48Rfs*46 0.27 TCGA-DD-AACO-01 6 33289254 33289254 A C DAXX Missense_Mutation p.L100V 0.41 deleterious(0) probably_damaging(0.916) TCGA-DD-AACO-01 6 84233828 84233828 T G PRSS35 Missense_Mutation p.L223R 0.22 tolerated(0.41) benign(0.007) TCGA-DD-AACO-01 7 158526782 158526782 G A ESYT2 3'UTR 0.62 TCGA-DD-AACO-01 7 19184898 19184898 G A FERD3L Missense_Mutation p.L30F 0.34 tolerated(0.05) benign(0.132) TCGA-DD-AACO-01 7 23509595 23509595 C T IGF2BP3 Silent p.P45P 0.25 TCGA-DD-AACO-01 7 42971964 42971964 G A MRPL32 5'UTR 0.43 TCGA-DD-AACO-01 7 48313643 48313643 T G ABCA13 Missense_Mutation p.N1460K 0.38 possibly_damaging(0.649) TCGA-DD-AACO-01 7 91652251 91652251 A - AKAP9 Frame_Shift_Del p.N1360Tfs*31 0.16 TCGA-DD-AACO-01 8 142151392 142151392 T C DENND3 Missense_Mutation p.Y118H 0.11 deleterious(0) probably_damaging(1) TCGA-DD-AACO-01 8 38257839 38257839 T A LETM2 Missense_Mutation p.F185Y 0.26 deleterious(0) probably_damaging(0.966) TCGA-DD-AACO-01 8 39468133 39468133 A G ADAM18 Missense_Mutation p.K144E 0.46 deleterious(0.01) possibly_damaging(0.606) TCGA-DD-AACO-01 8 52321795 52321795 G A PXDNL Missense_Mutation p.H797Y 0.35 deleterious(0.01) benign(0.106) TCGA-DD-AACO-01 9 129597910 129597910 G A ZBTB43 3'UTR 0.54 TCGA-DD-AACO-01 9 36170372 36170372 C T CCIN Silent p.G291G 0.53 TCGA-DD-AACO-01 X 153277357 153277357 C A IRAK1 Nonsense_Mutation p.E698* 0.67 TCGA-DD-AACO-01 Y 22754349 22754349 T C EIF1AY 3'UTR 0.90 TCGA-DD-AACP-01 10 105344941 105344941 T A NEURL1 Missense_Mutation p.L433H 0.09 deleterious(0) probably_damaging(0.95) TCGA-DD-AACP-01 10 118306864 118306864 A T PNLIP Silent p.G35G 0.30 TCGA-DD-AACP-01 10 17373544 17373544 G - ST8SIA6 Frame_Shift_Del p.A130Lfs*23 0.11 TCGA-DD-AACP-01 10 27342285 27342285 C A ANKRD26 Missense_Mutation p.E533D 0.30 tolerated(0.07) benign(0.008) TCGA-DD-AACP-01 10 96116942 96116942 C T NOC3L Missense_Mutation p.R166K 0.19 tolerated(0.88) benign(0.084) TCGA-DD-AACP-01 11 103909565 103909565 T C DDI1 3'UTR 0.77 TCGA-DD-AACP-01 11 109294946 109294946 T A C11orf87 Missense_Mutation p.L196Q 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DD-AACP-01 11 118279764 118279764 A T ATP5L Missense_Mutation p.Y88F 0.91 tolerated(0.24) benign(0.044) TCGA-DD-AACP-01 11 121016430 121016430 C T TECTA Missense_Mutation p.T1237I 0.32 tolerated(0.18) possibly_damaging(0.479) TCGA-DD-AACP-01 11 123847992 123847992 C A OR10S1 Missense_Mutation p.R136L 0.88 deleterious(0) probably_damaging(0.997) TCGA-DD-AACP-01 11 200195 200195 T C ODF3 3'UTR 0.44 TCGA-DD-AACP-01 11 22844625 22844625 A C SVIP 3'UTR 0.31 TCGA-DD-AACP-01 11 30033588 30033588 T A KCNA4 Missense_Mutation p.D213V 0.69 deleterious(0) probably_damaging(0.999) TCGA-DD-AACP-01 11 32450064 32450064 T G WT1 Missense_Mutation p.M250L 0.38 tolerated_low_confidence(1) benign(0.002) TCGA-DD-AACP-01 11 33572682 33572682 G A KIAA1549L Missense_Mutation p.G903S 0.81 tolerated(0.77) benign(0.011) TCGA-DD-AACP-01 11 67200655 67200655 G A RPS6KB2 Missense_Mutation p.G256R 0.31 deleterious(0) probably_damaging(1) TCGA-DD-AACP-01 11 74563036 74563036 C T XRRA1 Missense_Mutation p.R413Q 0.39 tolerated(0.05) probably_damaging(0.941) TCGA-DD-AACP-01 11 75282922 75282922 G A SERPINH1 Missense_Mutation p.V351M 0.60 tolerated(0.09) possibly_damaging(0.474) TCGA-DD-AACP-01 11 83177808 83177808 A G DLG2 Missense_Mutation p.V891A 0.31 tolerated(0.35) benign(0.008) TCGA-DD-AACP-01 12 108686420 108686420 A - CMKLR1 Frame_Shift_Del p.F107Sfs*24 0.16 TCGA-DD-AACP-01 12 108985575 108985575 G A TMEM119 Silent p.D195D 0.52 TCGA-DD-AACP-01 12 14794100 14794100 C G GUCY2C Missense_Mutation p.D662H 0.10 deleterious(0) probably_damaging(1) TCGA-DD-AACP-01 12 24736316 24736316 A G LINC00477 RNA 0.31 TCGA-DD-AACP-01 12 31247737 31247737 A G DDX11 Missense_Mutation p.D488G 0.51 deleterious(0.02) probably_damaging(0.999) TCGA-DD-AACP-01 12 57849283 57849283 A T INHBE 5'UTR 0.53 TCGA-DD-AACP-01 12 57850290 57850290 C A INHBE Missense_Mutation p.P238T 0.05 tolerated(0.09) possibly_damaging(0.77) TCGA-DD-AACP-01 12 57910274 57910274 G A MARS Silent p.A871A 0.25 TCGA-DD-AACP-01 12 58020451 58020451 G T B4GALNT1 3'UTR 0.29 TCGA-DD-AACP-01 12 62902326 62902326 T C MON2 Intron 0.30 TCGA-DD-AACP-01 12 6730266 6730266 G A LPAR5 Missense_Mutation p.A50V 0.08 tolerated(0.49) benign(0.011) TCGA-DD-AACP-01 12 8376148 8376148 T A FAM90A1 Missense_Mutation p.Q110L 0.37 deleterious(0.02) benign(0.144) TCGA-DD-AACP-01 13 26788338 26788338 G C RNF6 Missense_Mutation p.R561G 0.89 tolerated(0.31) benign(0.003) TCGA-DD-AACP-01 13 26911779 26911779 A T CDK8 Silent p.A68A 0.82 TCGA-DD-AACP-01 13 36046629 36046629 G A NBEA Missense_Mutation p.E2181K 0.32 deleterious(0) possibly_damaging(0.631) TCGA-DD-AACP-01 13 39454985 39454985 T A FREM2 3'UTR 0.11 TCGA-DD-AACP-01 13 51504867 51504867 T G RNASEH2B Missense_Mutation p.L98R 0.12 deleterious(0) probably_damaging(1) TCGA-DD-AACP-01 13 96579477 96579477 T C UGGT2 Missense_Mutation p.I697M 0.79 tolerated(0.15) benign(0.413) TCGA-DD-AACP-01 14 106829794 106829794 C A IGHV4-34 Missense_Mutation p.G57C 0.51 deleterious(0.02) possibly_damaging(0.557) TCGA-DD-AACP-01 14 20820473 20820473 T C PARP2 Silent p.D202D 0.21 TCGA-DD-AACP-01 14 21679248 21679248 G T HNRNPC 3'UTR 0.40 TCGA-DD-AACP-01 14 24517955 24517955 G A LRRC16B 5'Flank 0.20 TCGA-DD-AACP-01 14 31647288 31647288 G A HECTD1 Missense_Mutation p.R105C 0.04 deleterious(0) probably_damaging(0.991) TCGA-DD-AACP-01 14 50760900 50760900 T - L2HGDH Frame_Shift_Del p.Q158Rfs*7 0.15 TCGA-DD-AACP-01 14 60976223 60976223 C T SIX6 Missense_Mutation p.S36L 0.30 deleterious(0.02) possibly_damaging(0.452) TCGA-DD-AACP-01 14 61180534 61180534 G A SIX4 Missense_Mutation p.P646L 0.04 deleterious_low_confidence(0) possibly_damaging(0.636) TCGA-DD-AACP-01 14 64065604 64065604 T C WDR89 Missense_Mutation p.I353V 0.12 tolerated(0.75) benign(0) TCGA-DD-AACP-01 14 75989066 75989066 G A BATF Missense_Mutation p.R14H 0.11 tolerated(0.1) unknown(0) TCGA-DD-AACP-01 14 79746796 79746796 G A NRXN3 Intron 0.53 TCGA-DD-AACP-01 15 20662851 20662851 T C HERC2P3 RNA 0.17 TCGA-DD-AACP-01 15 32908539 32908539 G C ARHGAP11A Missense_Mutation p.G43R 0.07 tolerated(0.57) benign(0.002) TCGA-DD-AACP-01 15 50884532 50884532 G A TRPM7 Silent p.S1300S 0.24 TCGA-DD-AACP-01 15 58936148 58936148 T A ADAM10 Silent p.T255T 0.10 TCGA-DD-AACP-01 15 72638540 72638540 G T HEXA Intron 0.18 TCGA-DD-AACP-01 15 73889554 73889554 C A NPTN Missense_Mutation p.R83L 0.22 deleterious(0) probably_damaging(0.992) TCGA-DD-AACP-01 15 79090369 79090369 A G ADAMTS7 Silent p.H181H 0.24 TCGA-DD-AACP-01 16 20808320 20808320 A G ACSM3 3'UTR 0.80 TCGA-DD-AACP-01 16 23200752 23200752 G A SCNN1G Silent p.K126K 0.86 TCGA-DD-AACP-01 16 23223412 23223412 T A SCNN1G Missense_Mutation p.Y412N 0.85 deleterious(0) probably_damaging(0.98) TCGA-DD-AACP-01 16 65005962 65005962 G T CDH11 Silent p.R466R 0.75 TCGA-DD-AACP-01 16 66776358 66776358 C T DYNC1LI2 Missense_Mutation p.R171K 0.39 tolerated(0.67) probably_damaging(0.976) TCGA-DD-AACP-01 16 70304225 70304225 C A AARS Silent p.L230L 0.75 TCGA-DD-AACP-01 16 70588395 70588395 A G SF3B3 Silent p.L483L 0.12 TCGA-DD-AACP-01 16 84203498 84203498 T C DNAAF1 Missense_Mutation p.V355A 0.76 tolerated(0.39) benign(0.009) TCGA-DD-AACP-01 16 84691009 84691009 G A KLHL36 Missense_Mutation p.S199N 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-DD-AACP-01 16 87443913 87443913 T A ZCCHC14 Silent p.P941P 0.30 TCGA-DD-AACP-01 17 10363528 10363528 C G MYH4 Missense_Mutation p.V420L 0.07 deleterious(0.02) possibly_damaging(0.669) TCGA-DD-AACP-01 17 10398293 10398293 C T MYH1 Silent p.L1807L 0.45 TCGA-DD-AACP-01 17 1371776 1371776 G C MYO1C Silent p.A875A 0.11 TCGA-DD-AACP-01 17 2276666 2276666 A G SGSM2 Silent p.A653A 0.29 TCGA-DD-AACP-01 17 27419423 27419423 T C MYO18A Missense_Mutation p.M1709V 0.24 tolerated(0.16) possibly_damaging(0.457) TCGA-DD-AACP-01 17 27434112 27434112 C A MYO18A Missense_Mutation p.V1143L 0.25 tolerated(0.44) benign(0.006) TCGA-DD-AACP-01 17 34916707 34916707 T C GGNBP2 Silent p.L175L 0.31 TCGA-DD-AACP-01 17 35902159 35902159 G A SYNRG Silent p.F1039F 0.24 TCGA-DD-AACP-01 17 39182762 39182762 T C KRTAP1-5 3'UTR 0.04 TCGA-DD-AACP-01 17 40817531 40817531 C T TUBG2 Missense_Mutation p.T215I 0.32 tolerated(0.06) benign(0.045) TCGA-DD-AACP-01 17 41347008 41347008 A G NBR1 Missense_Mutation p.I568V 0.07 deleterious(0) probably_damaging(0.995) TCGA-DD-AACP-01 17 42081799 42081799 G C PYY 5'UTR 0.28 TCGA-DD-AACP-01 17 43310645 43310645 C A FMNL1 Missense_Mutation p.L128M 0.32 deleterious(0) unknown(0) TCGA-DD-AACP-01 17 61910151 61910151 A G SMARCD2 3'UTR 0.31 TCGA-DD-AACP-01 17 62291064 62291064 T A TEX2 Missense_Mutation p.I172F 0.09 tolerated(0.7) benign(0.126) TCGA-DD-AACP-01 17 74019445 74019445 C T EVPL Silent p.L136L 0.07 TCGA-DD-AACP-01 17 76157076 76157076 A G C17orf99 Silent p.E37E 0.16 TCGA-DD-AACP-01 17 76898001 76898001 G T DDC8 5'UTR 0.07 TCGA-DD-AACP-01 17 79077867 79077867 C T BAIAP2 Missense_Mutation p.P342L 0.30 deleterious(0.01) probably_damaging(1) TCGA-DD-AACP-01 17 79650941 79650941 G A ARL16 5'UTR 0.24 TCGA-DD-AACP-01 17 79650942 79650942 G A ARL16 5'UTR 0.25 TCGA-DD-AACP-01 18 28934321 28934321 A G DSG1 Missense_Mutation p.Y721C 0.37 deleterious(0) probably_damaging(1) TCGA-DD-AACP-01 18 59777111 59777111 T C PIGN Silent p.V510V 0.78 TCGA-DD-AACP-01 18 61387261 61387261 C G SERPINB11 Missense_Mutation p.L164V 0.09 deleterious(0.01) probably_damaging(0.939) TCGA-DD-AACP-01 18 70526062 70526062 A T NETO1 Silent p.P156P 0.42 TCGA-DD-AACP-01 19 12089204 12089204 T G ZNF763 Nonsense_Mutation p.Y158* 0.06 TCGA-DD-AACP-01 19 15350628 15350628 A G BRD4 Missense_Mutation p.L1096P 0.80 possibly_damaging(0.485) TCGA-DD-AACP-01 19 17759295 17759295 G A UNC13A Silent p.C587C 0.89 TCGA-DD-AACP-01 19 2137025 2137045 GGTGGTCAGCATGATGACGTC - AP3D1 In_Frame_Del p.D107_T113del 0.13 TCGA-DD-AACP-01 19 33579137 33579137 C T GPATCH1 Silent p.F57F 0.11 TCGA-DD-AACP-01 19 34925845 34925845 A G UBA2 Missense_Mutation p.Y144C 0.35 deleterious(0) probably_damaging(0.987) TCGA-DD-AACP-01 19 35435284 35435284 A G ZNF30 Missense_Mutation p.T473A 0.37 tolerated(0.51) benign(0.006) TCGA-DD-AACP-01 19 35435313 35435313 A G ZNF30 Silent p.V482V 0.34 TCGA-DD-AACP-01 19 37676552 37676552 T C ZNF585B Silent p.T629T 0.54 TCGA-DD-AACP-01 19 38202519 38202519 T C ZNF607 Translation_Start_Site p.M1? 0.51 deleterious(0.01) benign(0.157) TCGA-DD-AACP-01 19 41173904 41173904 T C NUMBL Silent p.Q433Q 0.28 TCGA-DD-AACP-01 19 43430643 43430643 A G PSG7 Missense_Mutation p.I312T 0.46 tolerated(0.23) benign(0.056) TCGA-DD-AACP-01 19 44500765 44500765 A G ZNF155 Silent p.K263K 0.20 TCGA-DD-AACP-01 19 49604657 49604657 T G SNRNP70 Missense_Mutation p.V135G 0.06 deleterious(0) probably_damaging(0.953) TCGA-DD-AACP-01 19 536284 536284 C T CDC34 Silent p.D102D 0.13 TCGA-DD-AACP-01 19 55715250 55715250 G A PTPRH Silent p.V262V 0.19 TCGA-DD-AACP-01 19 9038082 9038082 G T MUC16 Missense_Mutation p.S12065Y 0.89 possibly_damaging(0.506) TCGA-DD-AACP-01 1 109321972 109321972 A G STXBP3 Missense_Mutation p.H250R 0.35 deleterious(0.02) probably_damaging(1) TCGA-DD-AACP-01 1 114514596 114514596 G A HIPK1 Intron 0.25 TCGA-DD-AACP-01 1 115487586 115487586 C T SYCP1 Missense_Mutation p.L713F 0.06 deleterious(0) probably_damaging(1) TCGA-DD-AACP-01 1 116948491 116948491 A G ATP1A1 3'Flank 0.31 TCGA-DD-AACP-01 1 118169654 118169654 T C FAM46C 3'UTR 0.24 TCGA-DD-AACP-01 1 11847379 11847379 C A MTHFR 3'UTR 0.40 TCGA-DD-AACP-01 1 12343562 12343562 C T VPS13D Silent p.S1801S 0.43 TCGA-DD-AACP-01 1 12628239 12628239 T C DHRS3 3'UTR 0.33 TCGA-DD-AACP-01 1 145209427 145209427 C G RP11-458D21.5 5'UTR 0.11 TCGA-DD-AACP-01 1 150595096 150595096 T C ENSA 3'Flank 0.17 TCGA-DD-AACP-01 1 151261604 151261604 G A ZNF687 Silent p.V776V 0.05 TCGA-DD-AACP-01 1 152733724 152733724 C G KPRP Missense_Mutation p.R554G 0.03 deleterious_low_confidence(0.04) benign(0.019) TCGA-DD-AACP-01 1 158450591 158450591 G C OR10R2 Missense_Mutation p.M308I 0.19 tolerated(0.25) benign(0.003) TCGA-DD-AACP-01 1 158532908 158532908 T A OR6P1 Missense_Mutation p.I163F 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-DD-AACP-01 1 158622440 158622440 G A SPTA1 Silent p.Y1064Y 0.17 TCGA-DD-AACP-01 1 161647370 161647370 A C FCGR2B 3'UTR 0.17 TCGA-DD-AACP-01 1 16271291 16271291 T G ZBTB17 Missense_Mutation p.H324P 0.13 deleterious(0) probably_damaging(0.986) TCGA-DD-AACP-01 1 168215835 168215835 A G SFT2D2 3'UTR 0.61 TCGA-DD-AACP-01 1 176525331 176525331 T C PAPPA2 5'UTR 0.19 TCGA-DD-AACP-01 1 17934342 17934342 C A ARHGEF10L Missense_Mutation p.A160D 0.40 deleterious(0.03) benign(0.19) TCGA-DD-AACP-01 1 203028385 203028385 G A PPFIA4 Silent p.R323R 0.03 TCGA-DD-AACP-01 1 207498067 207498067 A G CD55 Silent p.K150K 0.60 TCGA-DD-AACP-01 1 208202219 208202219 C A PLXNA2 Silent p.L1798L 0.23 TCGA-DD-AACP-01 1 212798986 212798986 A G FAM71A Missense_Mutation p.N256S 0.19 tolerated(1) benign(0.002) TCGA-DD-AACP-01 1 216420462 216420462 G A USH2A Silent p.F758F 0.08 TCGA-DD-AACP-01 1 220160734 220160734 T C EPRS Missense_Mutation p.I930V 0.16 tolerated(0.2) benign(0) TCGA-DD-AACP-01 1 225446851 225446851 C T DNAH14 Silent p.A2345A 0.02 TCGA-DD-AACP-01 1 245809448 245809448 T A KIF26B Missense_Mutation p.H708Q 0.06 deleterious(0) unknown(0) TCGA-DD-AACP-01 1 248436541 248436541 G T OR2T33 Silent p.V192V 0.25 TCGA-DD-AACP-01 1 248636988 248636988 G A OR2T3 Missense_Mutation p.A113T 0.18 tolerated(0.38) benign(0.03) TCGA-DD-AACP-01 1 26136219 26136219 T G SEPN1 Missense_Mutation p.F306L 0.49 tolerated(0.05) possibly_damaging(0.452) TCGA-DD-AACP-01 1 27124181 27124200 CCCCACCAGGACAAAAGGTC - PIGV Frame_Shift_Del p.P444Qfs*61 0.29 TCGA-DD-AACP-01 1 34123626 34123626 G A CSMD2 Missense_Mutation p.A1416V 0.07 tolerated(0.21) benign(0.003) TCGA-DD-AACP-01 1 35447692 35447692 T C ZMYM6NB Silent p.K106K 0.48 TCGA-DD-AACP-01 1 36479616 36479616 C A AGO3 Missense_Mutation p.A458D 0.42 tolerated(0.1) possibly_damaging(0.641) TCGA-DD-AACP-01 1 55331043 55331043 C T DHCR24 Missense_Mutation p.G318D 0.07 tolerated(0.07) benign(0.288) TCGA-DD-AACP-01 1 55527163 55527163 C G PCSK9 Silent p.S599S 0.37 TCGA-DD-AACP-01 1 84356067 84356067 C A TTLL7 Missense_Mutation p.R769L 0.46 deleterious(0) probably_damaging(0.984) TCGA-DD-AACP-01 1 91781372 91781372 G A HFM1 Missense_Mutation p.T1047M 0.42 tolerated(1) benign(0.001) TCGA-DD-AACP-01 1 95310943 95310943 A T SLC44A3 Missense_Mutation p.Q332L 0.28 deleterious(0.01) probably_damaging(1) TCGA-DD-AACP-01 20 49367056 49367056 A G PARD6B 3'UTR 0.12 TCGA-DD-AACP-01 20 62196516 62196516 T C HELZ2 Missense_Mutation p.N1220S 0.05 deleterious(0.02) benign(0.214) TCGA-DD-AACP-01 20 8705358 8705358 A G PLCB1 Missense_Mutation p.Y546C 0.39 deleterious(0) probably_damaging(1) TCGA-DD-AACP-01 21 28210396 28210396 G C ADAMTS1 Missense_Mutation p.S802R 0.05 deleterious(0) probably_damaging(1) TCGA-DD-AACP-01 21 35821461 35821461 C T KCNE1 3'UTR 0.92 TCGA-DD-AACP-01 22 19213778 19213778 C G CLTCL1 Missense_Mutation p.K637N 0.27 deleterious(0) probably_damaging(0.93) TCGA-DD-AACP-01 22 31740949 31740949 G C PATZ1 Missense_Mutation p.R214G 0.57 tolerated(0.47) benign(0) TCGA-DD-AACP-01 22 37485802 37485802 C T TMPRSS6 Missense_Mutation p.V227M 0.27 deleterious(0.01) possibly_damaging(0.776) TCGA-DD-AACP-01 22 40058338 40058338 G A CACNA1I Silent p.G1090G 0.09 TCGA-DD-AACP-01 22 42086736 42086736 C T C22orf46 Silent p.D35D 0.42 TCGA-DD-AACP-01 22 42086737 42086737 C T C22orf46 Missense_Mutation p.P36S 0.42 deleterious(0.01) benign(0.045) TCGA-DD-AACP-01 2 11750992 11750992 A T GREB1 Missense_Mutation p.M949L 0.04 deleterious(0.02) possibly_damaging(0.755) TCGA-DD-AACP-01 2 11911614 11911614 G A LPIN1 Silent p.T184T 0.25 TCGA-DD-AACP-01 2 1480955 1480955 G C TPO Missense_Mutation p.G306A 0.17 tolerated(0.09) benign(0.168) TCGA-DD-AACP-01 2 1481307 1481307 C T TPO Silent p.A423A 0.25 TCGA-DD-AACP-01 2 15307154 15307172 CAGGGCCACAGGTGGCCCT - NBAS Missense_Mutation 0.44 TCGA-DD-AACP-01 2 174828661 174828661 G A SP3 Intron 0.27 TCGA-DD-AACP-01 2 179637884 179637884 T G TTN Missense_Mutation p.T2603P 0.66 TCGA-DD-AACP-01 2 201305388 201305388 A T SPATS2L Missense_Mutation p.K223N 0.22 deleterious(0) probably_damaging(0.999) TCGA-DD-AACP-01 2 20135328 20135328 G C WDR35 Missense_Mutation p.N828K 0.27 deleterious(0.01) benign(0.242) TCGA-DD-AACP-01 2 220480870 220480870 C T STK11IP Silent p.I1085I 0.23 TCGA-DD-AACP-01 2 238249491 238249491 T C COL6A3 Missense_Mutation p.T2690A 0.26 unknown(0) TCGA-DD-AACP-01 2 23865474 23865474 C A KLHL29 Missense_Mutation p.P232T 0.19 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-DD-AACP-01 2 238925260 238925260 T C UBE2F Silent p.D89D 0.25 TCGA-DD-AACP-01 2 3691577 3691577 C T COLEC11 Missense_Mutation p.R243C 0.25 deleterious(0) probably_damaging(0.979) TCGA-DD-AACP-01 2 56419881 56419881 C A CCDC85A Silent p.G182G 0.30 TCGA-DD-AACP-01 2 90044240 90044240 G T IGKV2D-24 Missense_Mutation p.G54V 0.55 deleterious(0) probably_damaging(0.975) TCGA-DD-AACP-01 2 96262093 96262093 C G TRIM43 Silent p.V217V 0.16 TCGA-DD-AACP-01 3 108076940 108076940 G A HHLA2 Missense_Mutation p.S312N 0.56 tolerated(0.06) benign(0.375) TCGA-DD-AACP-01 3 121410144 121410144 T C GOLGB1 Silent p.L2689L 0.31 TCGA-DD-AACP-01 3 121417563 121417563 T C GOLGB1 Missense_Mutation p.M603V 0.26 benign(0.001) TCGA-DD-AACP-01 3 130098644 130098644 G T COL6A5 Missense_Mutation p.D351Y 0.28 deleterious(0.01) probably_damaging(0.95) TCGA-DD-AACP-01 3 139096979 139096979 T C COPB2 Silent p.Q136Q 0.20 TCGA-DD-AACP-01 3 164783108 164783108 G A SI Missense_Mutation p.R250C 0.36 deleterious(0) probably_damaging(0.929) TCGA-DD-AACP-01 3 170715983 170715983 G T SLC2A2 Missense_Mutation p.A458E 0.53 tolerated(0.53) benign(0.134) TCGA-DD-AACP-01 3 172834953 172834953 T C SPATA16 Missense_Mutation p.K190R 0.55 tolerated(0.21) possibly_damaging(0.486) TCGA-DD-AACP-01 3 32570073 32570073 C A DYNC1LI1 Missense_Mutation p.V443F 0.61 deleterious(0) probably_damaging(0.987) TCGA-DD-AACP-01 3 35725610 35725610 T C ARPP21 Intron 0.16 TCGA-DD-AACP-01 3 41266101 41266101 C A CTNNB1 Missense_Mutation p.S33Y 0.14 deleterious(0) possibly_damaging(0.64) TCGA-DD-AACP-01 3 49928959 49928959 C T MST1R Missense_Mutation p.R1136H 0.05 deleterious(0) possibly_damaging(0.753) TCGA-DD-AACP-01 3 62648033 62648033 G A CADPS Nonsense_Mutation p.R309* 0.53 TCGA-DD-AACP-01 3 9955676 9955676 A G IL17RE Missense_Mutation p.I422V 0.51 tolerated(0.23) benign(0.008) TCGA-DD-AACP-01 4 144359564 144359564 A T GAB1 Missense_Mutation p.T336S 0.54 tolerated(0.55) benign(0) TCGA-DD-AACP-01 4 152571280 152571280 A G FAM160A1 Missense_Mutation p.E696G 0.05 tolerated(0.11) benign(0.11) TCGA-DD-AACP-01 4 155525911 155525911 G A FGG 3'UTR 0.47 TCGA-DD-AACP-01 4 15589442 15589442 T C CC2D2A Missense_Mutation p.F1357L 0.45 deleterious(0.01) benign(0.388) TCGA-DD-AACP-01 4 183721306 183721306 G A TENM3 Silent p.A2634A 0.55 TCGA-DD-AACP-01 4 186598712 186598712 C G SORBS2 Intron 0.43 TCGA-DD-AACP-01 4 25419263 25419263 C G ANAPC4 Missense_Mutation p.P701A 0.05 tolerated(0.17) benign(0.037) TCGA-DD-AACP-01 4 30921954 30921954 G T PCDH7 Silent p.P1118P 0.39 TCGA-DD-AACP-01 4 42403584 42403585 GA - SHISA3 3'UTR 0.39 TCGA-DD-AACP-01 4 57261616 57261616 T G PPAT Missense_Mutation p.M486L 0.36 tolerated(0.45) benign(0) TCGA-DD-AACP-01 4 57302417 57302417 C T PAICS 5'UTR 0.43 TCGA-DD-AACP-01 4 62845284 62845284 A G LPHN3 Missense_Mutation p.S869G 0.38 tolerated(0.54) benign(0.001) TCGA-DD-AACP-01 4 65145687 65145687 G C TECRL 3'UTR 0.42 TCGA-DD-AACP-01 4 70361015 70361018 ACAG - UGT2B4 Frame_Shift_Del p.L188Sfs*13 0.33 TCGA-DD-AACP-01 4 76781781 76781781 G A PPEF2 3'UTR 0.08 TCGA-DD-AACP-01 4 86916340 86916340 G C ARHGAP24 Silent p.L511L 0.42 TCGA-DD-AACP-01 5 108672798 108672798 T C PJA2 3'UTR 0.25 TCGA-DD-AACP-01 5 109065183 109065183 A G MAN2A1 Missense_Mutation p.I226V 0.29 tolerated(0.08) benign(0.143) TCGA-DD-AACP-01 5 110462635 110462635 T C WDR36 3'UTR 0.05 TCGA-DD-AACP-01 5 113798873 113798873 C G KCNN2 Missense_Mutation p.L377V 0.18 tolerated(0.15) possibly_damaging(0.728) TCGA-DD-AACP-01 5 128956382 128956382 T A ADAMTS19 Missense_Mutation p.I511N 0.58 deleterious(0) possibly_damaging(0.811) TCGA-DD-AACP-01 5 137523281 137523281 T G KIF20A 3'UTR 0.25 TCGA-DD-AACP-01 5 139218319 139218319 C T PSD2 Missense_Mutation p.R644W 0.20 deleterious(0) probably_damaging(0.995) TCGA-DD-AACP-01 5 140783284 140783284 G T PCDHGA9 Silent p.V255V 0.64 TCGA-DD-AACP-01 5 153434731 153434731 A G MFAP3 3'UTR 0.09 TCGA-DD-AACP-01 5 167826554 167826554 G A WWC1 Missense_Mutation p.G191D 0.21 deleterious(0) probably_damaging(1) TCGA-DD-AACP-01 5 43040045 43040045 G C ANXA2R Missense_Mutation p.P35R 0.18 tolerated(0.09) possibly_damaging(0.536) TCGA-DD-AACP-01 5 45695868 45695868 A C HCN1 Missense_Mutation p.S110A 0.09 tolerated(0.2) possibly_damaging(0.886) TCGA-DD-AACP-01 5 68665293 68665293 T A RAD17 5'Flank 0.59 TCGA-DD-AACP-01 5 90445963 90445963 G A GPR98 Silent p.T6183T 0.20 TCGA-DD-AACP-01 6 105526660 105526660 A T LIN28B 3'UTR 0.31 TCGA-DD-AACP-01 6 10586228 10586228 C G GCNT2 Intron 0.06 TCGA-DD-AACP-01 6 131996239 131996239 A G ENPP3 Missense_Mutation p.Y261C 0.26 deleterious(0.04) probably_damaging(0.971) TCGA-DD-AACP-01 6 152749436 152749436 T C SYNE1 Missense_Mutation p.Q1627R 0.26 benign(0.298) TCGA-DD-AACP-01 6 152804308 152804308 G T SYNE1 Missense_Mutation p.A421E 0.42 benign(0.347) TCGA-DD-AACP-01 6 157527359 157527359 T G ARID1B Missense_Mutation p.F1695C 0.51 probably_damaging(0.997) TCGA-DD-AACP-01 6 161010720 161010720 A T LPA Missense_Mutation p.V1271D 0.42 tolerated(0.41) probably_damaging(0.959) TCGA-DD-AACP-01 6 165844911 165844911 T C PDE10A Missense_Mutation p.Q248R 0.24 deleterious(0.05) benign(0.33) TCGA-DD-AACP-01 6 27107437 27107437 C A HIST1H4I 3'UTR 0.14 TCGA-DD-AACP-01 6 31736938 31736938 G A VWA7 Nonsense_Mutation p.R454* 0.20 TCGA-DD-AACP-01 6 31864772 31864772 A G EHMT2 Intron 0.27 TCGA-DD-AACP-01 6 42147077 42147077 G A GUCA1A Missense_Mutation p.R181H 0.06 tolerated(0.07) benign(0.001) TCGA-DD-AACP-01 6 73102465 73102465 G A RIMS1 Missense_Mutation p.G1524E 0.06 deleterious(0) probably_damaging(1) TCGA-DD-AACP-01 7 100284400 100284400 T C GIGYF1 Missense_Mutation p.E189G 0.06 deleterious(0) unknown(0) TCGA-DD-AACP-01 7 100484804 100484804 G A SRRT Missense_Mutation p.R653H 0.48 deleterious(0.01) probably_damaging(0.957) TCGA-DD-AACP-01 7 103126731 103126731 G A RELN Missense_Mutation p.A3299V 0.17 tolerated(0.62) benign(0.016) TCGA-DD-AACP-01 7 107569615 107569615 A G LAMB1 Missense_Mutation p.M1594T 0.21 tolerated(0.6) benign(0) TCGA-DD-AACP-01 7 1132903 1132903 C A GPER1 3'UTR 0.06 TCGA-DD-AACP-01 7 121716604 121716604 A C AASS Missense_Mutation p.I907R 0.20 deleterious(0) possibly_damaging(0.701) TCGA-DD-AACP-01 7 134719335 134719335 G A AGBL3 Silent p.T331T 0.11 TCGA-DD-AACP-01 7 156974230 156974230 A G UBE3C Missense_Mutation p.Y212C 0.16 deleterious(0.05) benign(0.035) TCGA-DD-AACP-01 7 1785074 1785074 C T ELFN1 Missense_Mutation p.P281L 0.05 tolerated(0.45) benign(0.145) TCGA-DD-AACP-01 7 2564346 2564346 C T LFNG Silent p.D150D 0.03 TCGA-DD-AACP-01 7 36445824 36445824 G A ANLN Missense_Mutation p.M174I 0.39 tolerated(0.12) benign(0.002) TCGA-DD-AACP-01 7 5983565 5983565 C T RSPH10B Missense_Mutation p.R529H 0.12 tolerated(0.47) benign(0.001) TCGA-DD-AACP-01 7 6029572 6029572 T C PMS2 Missense_Mutation p.N335D 0.37 deleterious(0) probably_damaging(0.97) TCGA-DD-AACP-01 7 64363699 64363699 T C ZNF273 Missense_Mutation p.S2P 0.16 tolerated_low_confidence(0.07) benign(0.307) TCGA-DD-AACP-01 7 6820496 6820496 G A RSPH10B2 Missense_Mutation p.R529H 0.11 tolerated(0.46) benign(0) TCGA-DD-AACP-01 7 75695659 75695659 C G MDH2 Missense_Mutation p.I316M 0.17 deleterious(0.01) benign(0.25) TCGA-DD-AACP-01 7 76871032 76871032 G T CCDC146 Silent p.L88L 0.21 TCGA-DD-AACP-01 7 98254264 98254264 T C NPTX2 Missense_Mutation p.F225S 0.22 deleterious(0) probably_damaging(0.974) TCGA-DD-AACP-01 8 146156959 146156959 T C ZNF16 Missense_Mutation p.Y405C 0.25 deleterious(0) probably_damaging(1) TCGA-DD-AACP-01 8 17823507 17823507 G T PCM1 Splice_Site p.X952_splice 0.31 TCGA-DD-AACP-01 8 31004928 31004928 A G WRN Missense_Mutation p.K1170E 0.28 tolerated(1) benign(0.005) TCGA-DD-AACP-01 8 38386128 38386128 G A C8orf86 Missense_Mutation p.P10S 0.25 tolerated_low_confidence(0.08) possibly_damaging(0.803) TCGA-DD-AACP-01 8 48767935 48767935 C T PRKDC Splice_Site p.X2203_splice 0.42 TCGA-DD-AACP-01 8 69358840 69358840 T A C8orf34 Intron 0.13 TCGA-DD-AACP-01 8 94748356 94748356 G A RBM12B Missense_Mutation p.R95C 0.06 deleterious(0.01) probably_damaging(0.997) TCGA-DD-AACP-01 9 114411923 114411923 A C DNAJC25 Missense_Mutation p.K227T 0.45 tolerated(0.06) probably_damaging(0.96) TCGA-DD-AACP-01 9 115652456 115652456 C T SLC46A2 Missense_Mutation p.R169H 0.06 deleterious(0) probably_damaging(1) TCGA-DD-AACP-01 9 131186523 131186523 C A CERCAM Missense_Mutation p.S178Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-DD-AACP-01 9 131832663 131832663 C T FAM73B Silent p.P571P 0.08 TCGA-DD-AACP-01 9 133512503 133512503 A C FUBP3 3'UTR 0.35 TCGA-DD-AACP-01 9 139395186 139395186 C T NOTCH1 Missense_Mutation p.A1918T 0.25 deleterious(0) possibly_damaging(0.622) TCGA-DD-AACP-01 9 17394652 17394652 G C CNTLN Missense_Mutation p.E734Q 0.07 deleterious(0.02) probably_damaging(0.928) TCGA-DD-AACP-01 9 35717322 35717322 T A TLN1 Missense_Mutation p.D760V 0.49 deleterious(0) benign(0.197) TCGA-DD-AACP-01 9 35819298 35819298 T G FAM221B Missense_Mutation p.K316T 0.14 tolerated(0.26) benign(0.039) TCGA-DD-AACP-01 9 5535017 5535017 T A PDCD1LG2 Missense_Mutation p.W110R 0.46 deleterious(0.01) probably_damaging(0.978) TCGA-DD-AACP-01 9 86421241 86421241 T C GKAP1 Silent p.E64E 0.32 TCGA-DD-AACP-01 9 94486330 94486330 G A ROR2 Nonsense_Mutation p.Q816* 0.33 TCGA-DD-AACP-01 X 138729064 138729064 T - MCF2 Splice_Site p.X9_splice 0.09 TCGA-DD-AACP-01 X 140271004 140271004 A G LDOC1 Missense_Mutation p.I68T 0.12 deleterious(0) possibly_damaging(0.885) TCGA-DD-AACP-01 X 18189191 18189191 T C BEND2 Silent p.Q705Q 0.08 TCGA-DD-AACP-01 X 20154184 20154184 T G EIF1AX Intron 0.85 TCGA-DD-AACP-01 X 20187519 20187519 C T RPS6KA3 Splice_Site p.X481_splice 0.51 TCGA-DD-AACP-01 X 44035625 44035625 T - EFHC2 Frame_Shift_Del p.N652Mfs*19 0.24 TCGA-DD-AACP-01 X 67937418 67937418 A G STARD8 Missense_Mutation p.K221R 0.45 tolerated(0.1) probably_damaging(0.994) TCGA-DD-AACP-01 X 68748901 68748901 G T FAM155B Missense_Mutation p.W309C 0.87 deleterious(0.01) probably_damaging(0.993) TCGA-DD-AACP-01 X 70338479 70338479 C - MED12 5'Flank 0.47 TCGA-DD-AACP-01 X 70811974 70811974 A G ACRC Missense_Mutation p.Y21C 0.08 probably_damaging(0.926) TCGA-DD-AACP-01 X 73963968 73963968 G A KIAA2022 Missense_Mutation p.P142S 0.05 deleterious(0.01) probably_damaging(0.977) TCGA-DD-AACP-01 X 83372406 83372406 C T RPS6KA6 Missense_Mutation p.M282I 0.06 tolerated(0.05) possibly_damaging(0.753) TCGA-DD-AACP-01 X 91132817 91132817 G T PCDH11X Missense_Mutation p.K526N 0.09 tolerated(0.38) benign(0.082) TCGA-DD-AACP-01 X 91133013 91133013 A G PCDH11X Missense_Mutation p.I592V 0.30 tolerated(0.9) possibly_damaging(0.669) TCGA-DD-AACQ-01 10 105762701 105762701 A T SLK Missense_Mutation p.M589L 0.68 tolerated(0.13) benign(0) TCGA-DD-AACQ-01 10 38121875 38121875 G - ZNF248 Frame_Shift_Del p.Y137Ifs*9 0.27 TCGA-DD-AACQ-01 10 45480272 45480272 G A RASSF4 Missense_Mutation p.E129K 0.23 tolerated(0.1) benign(0.142) TCGA-DD-AACQ-01 10 5005646 5005646 A G AKR1C1 Missense_Mutation p.K4E 0.49 deleterious_low_confidence(0.04) benign(0.004) TCGA-DD-AACQ-01 10 61011121 61011121 A C FAM13C Intron 0.91 TCGA-DD-AACQ-01 10 61718217 61718217 A C C10orf40 Missense_Mutation p.C71W 0.07 deleterious_low_confidence(0) possibly_damaging(0.833) TCGA-DD-AACQ-01 11 100849716 100849716 A T ARHGAP42 Splice_Site p.X798_splice 0.36 TCGA-DD-AACQ-01 11 1013919 1013919 G T MUC6 Silent p.G2374G 0.37 TCGA-DD-AACQ-01 11 102661103 102661103 T A MMP1 3'UTR 0.39 TCGA-DD-AACQ-01 11 102738702 102738702 A T MMP12 RNA 0.38 TCGA-DD-AACQ-01 11 103909116 103909116 T A DDI1 3'UTR 0.42 TCGA-DD-AACQ-01 11 103909862 103909862 G A DDI1 3'UTR 0.40 TCGA-DD-AACQ-01 11 107682490 107682490 C G SLC35F2 Missense_Mutation p.R106T 0.31 tolerated(0.37) benign(0.007) TCGA-DD-AACQ-01 11 108042817 108042817 C G NPAT Intron 0.54 TCGA-DD-AACQ-01 11 113661810 113661810 C A ATF4P4 RNA 0.52 TCGA-DD-AACQ-01 11 11374171 11374171 G A CSNK2A3 Missense_Mutation p.H166Y 0.30 deleterious(0.01) probably_damaging(0.989) TCGA-DD-AACQ-01 11 118245934 118245934 A T UBE4A Silent p.V487V 0.48 TCGA-DD-AACQ-01 11 126326329 126326329 A T KIRREL3 Missense_Mutation p.S255T 0.36 deleterious(0) probably_damaging(0.993) TCGA-DD-AACQ-01 11 134127071 134127071 G T ACAD8 Silent p.L100L 0.43 TCGA-DD-AACQ-01 11 134253922 134253922 G T B3GAT1 Silent p.P91P 0.48 TCGA-DD-AACQ-01 11 46394022 46394022 A T DGKZ Silent p.R512R 0.29 TCGA-DD-AACQ-01 11 63057748 63057748 A G SLC22A10 Silent p.L37L 0.50 TCGA-DD-AACQ-01 11 78147774 78147774 A G NARS2 Missense_Mutation p.V459A 0.41 deleterious(0.03) benign(0.133) TCGA-DD-AACQ-01 11 93461977 93461977 G A KIAA1731 Missense_Mutation p.C2431Y 0.45 deleterious(0.01) benign(0.047) TCGA-DD-AACQ-01 12 10167985 10167985 A G CLEC12B Missense_Mutation p.I182V 0.43 deleterious(0.05) benign(0.198) TCGA-DD-AACQ-01 12 101745844 101745844 A T UTP20 Silent p.I1632I 0.33 TCGA-DD-AACQ-01 12 121691155 121691155 A T CAMKK2 Missense_Mutation p.L343H 0.42 deleterious(0.04) probably_damaging(0.926) TCGA-DD-AACQ-01 12 132428101 132428101 A T PUS1 Missense_Mutation p.E418D 0.48 tolerated(0.21) benign(0.004) TCGA-DD-AACQ-01 12 32136173 32136173 G A KIAA1551 Missense_Mutation p.V762I 0.05 tolerated(0.19) benign(0.18) TCGA-DD-AACQ-01 12 48143536 48143536 C G RAPGEF3 Silent p.V294V 0.10 TCGA-DD-AACQ-01 12 49440559 49440559 C A KMT2D Missense_Mutation p.M1417I 0.38 possibly_damaging(0.869) TCGA-DD-AACQ-01 12 49496886 49496886 G T LMBR1L Missense_Mutation p.L207M 0.48 tolerated(0.1) probably_damaging(1) TCGA-DD-AACQ-01 12 5022633 5022633 T A KCNA1 3'UTR 0.40 TCGA-DD-AACQ-01 12 52946681 52946681 T A KRT71 Missense_Mutation p.S61C 0.50 tolerated(0.09) benign(0.009) TCGA-DD-AACQ-01 12 6091140 6091140 A C VWF Missense_Mutation p.C2367G 0.37 deleterious(0) possibly_damaging(0.587) TCGA-DD-AACQ-01 12 63328291 63328291 A T PPM1H Missense_Mutation p.W76R 0.47 deleterious(0) probably_damaging(0.997) TCGA-DD-AACQ-01 12 6618958 6618958 A T NCAPD2 Missense_Mutation p.H68L 0.25 tolerated(0.5) benign(0.007) TCGA-DD-AACQ-01 12 93170694 93170694 T A EEA1 Nonsense_Mutation p.R1347* 0.49 TCGA-DD-AACQ-01 13 115090611 115090611 A T CHAMP1 Missense_Mutation p.S432C 0.28 deleterious(0.01) probably_damaging(0.946) TCGA-DD-AACQ-01 13 24466006 24466006 T C C1QTNF9B Missense_Mutation p.I142V 0.27 tolerated(0.53) benign(0.001) TCGA-DD-AACQ-01 13 25672518 25672518 A T PABPC3 3'UTR 0.43 TCGA-DD-AACQ-01 13 48611949 48611949 T G NUDT15 Missense_Mutation p.C23G 0.88 tolerated(0.39) benign(0) TCGA-DD-AACQ-01 13 50623320 50623320 T A DLEU2 Intron 0.85 TCGA-DD-AACQ-01 14 100138668 100138668 G C HHIPL1 Missense_Mutation p.G582A 0.06 deleterious(0.03) possibly_damaging(0.887) TCGA-DD-AACQ-01 14 105393469 105393469 C A PLD4 Intron 0.38 TCGA-DD-AACQ-01 14 105393470 105393470 C A PLD4 Intron 0.37 TCGA-DD-AACQ-01 14 105609964 105609964 A T JAG2 Silent p.P1032P 0.43 TCGA-DD-AACQ-01 14 105849223 105849223 G T PACS2 Missense_Mutation p.S533I 0.44 deleterious(0) benign(0.02) TCGA-DD-AACQ-01 14 105931455 105931455 C T MTA1 Missense_Mutation p.S520F 0.38 deleterious(0.01) possibly_damaging(0.534) TCGA-DD-AACQ-01 14 106209320 106209320 T C IGHG1 Missense_Mutation p.K30R 0.36 deleterious(0.04) possibly_damaging(0.842) TCGA-DD-AACQ-01 14 21623396 21623396 G T OR5AU1 Silent p.L263L 0.04 TCGA-DD-AACQ-01 14 24634149 24634149 G T IRF9 Missense_Mutation p.A326S 0.41 tolerated(0.92) benign(0.048) TCGA-DD-AACQ-01 14 24634150 24634150 C T IRF9 Missense_Mutation p.A326V 0.42 tolerated(0.13) benign(0.345) TCGA-DD-AACQ-01 14 58965625 58965631 TGGATCA AT KIAA0586 Frame_Shift_Del p.L1425Yfs*4 0.32 TCGA-DD-AACQ-01 14 59114740 59114740 T A DACT1 3'Flank 0.45 TCGA-DD-AACQ-01 14 93424588 93424588 C A ITPK1 Missense_Mutation p.V210F 0.58 deleterious(0.02) probably_damaging(0.931) TCGA-DD-AACQ-01 14 96781558 96781558 G C ATG2B Missense_Mutation p.A1192G 0.04 deleterious(0.01) probably_damaging(0.953) TCGA-DD-AACQ-01 15 28474355 28474355 T C HERC2 Missense_Mutation p.K1753R 0.42 benign(0) TCGA-DD-AACQ-01 15 33022899 33022899 G A GREM1 Missense_Mutation p.R3H 0.36 deleterious_low_confidence(0.05) probably_damaging(0.964) TCGA-DD-AACQ-01 15 43724680 43724680 C G TP53BP1 Silent p.V1129V 0.33 TCGA-DD-AACQ-01 15 45052006 45052006 G - TRIM69 Frame_Shift_Del p.G300Afs*26 0.08 TCGA-DD-AACQ-01 15 60678246 60678246 T A ANXA2 Missense_Mutation p.K28M 0.45 deleterious(0.01) probably_damaging(0.961) TCGA-DD-AACQ-01 15 62212341 62212341 T A VPS13C Missense_Mutation p.S2468C 0.35 tolerated(0.06) benign(0.353) TCGA-DD-AACQ-01 15 63419550 63419550 A T LACTB Splice_Site p.X206_splice 0.41 TCGA-DD-AACQ-01 15 79749293 79749293 G A KIAA1024 Missense_Mutation p.M268I 0.40 tolerated(0.89) benign(0.001) TCGA-DD-AACQ-01 15 79749294 79749294 G T KIAA1024 Missense_Mutation p.A269S 0.41 tolerated(0.44) benign(0.016) TCGA-DD-AACQ-01 16 21086768 21086768 A T DNAH3 Silent p.T1028T 0.47 TCGA-DD-AACQ-01 16 2983205 2983205 A C FLYWCH1 Missense_Mutation p.K290Q 0.23 deleterious(0.01) benign(0.083) TCGA-DD-AACQ-01 16 29990374 29990374 C T TAOK2 Silent p.S144S 0.47 TCGA-DD-AACQ-01 16 3634809 3634809 G C SLX4 Missense_Mutation p.S1567C 0.49 deleterious(0) probably_damaging(0.995) TCGA-DD-AACQ-01 16 3807812 3807812 T A CREBBP Nonsense_Mutation p.K1203* 0.38 TCGA-DD-AACQ-01 16 4057436 4057436 T A ADCY9 Missense_Mutation p.Q606L 0.41 tolerated(0.09) benign(0.104) TCGA-DD-AACQ-01 16 48368263 48368263 A C LONP2 Missense_Mutation p.E644D 0.76 tolerated(0.88) benign(0.057) TCGA-DD-AACQ-01 16 61689606 61689606 C T CDH8 Silent p.L558L 0.73 TCGA-DD-AACQ-01 16 67517219 67517219 A T AGRP Missense_Mutation p.M28K 0.77 deleterious(0.02) benign(0.02) TCGA-DD-AACQ-01 16 70690996 70690996 T A IL34 Missense_Mutation p.L125Q 0.85 deleterious(0) probably_damaging(1) TCGA-DD-AACQ-01 16 84203529 84203529 T A DNAAF1 Silent p.P365P 0.76 TCGA-DD-AACQ-01 17 26982447 26982447 T A SDF2 Missense_Mutation p.Y69F 0.46 deleterious(0) probably_damaging(0.998) TCGA-DD-AACQ-01 17 28507943 28507943 A T NSRP1 Nonsense_Mutation p.K176* 0.38 TCGA-DD-AACQ-01 17 30179202 30179202 T A COPRS Nonsense_Mutation p.K171* 0.38 TCGA-DD-AACQ-01 17 39871711 39871711 T C GAST Missense_Mutation p.V8A 0.52 tolerated_low_confidence(0.54) benign(0) TCGA-DD-AACQ-01 17 42271987 42271987 T A ATXN7L3 Missense_Mutation p.S272C 0.33 deleterious(0.02) possibly_damaging(0.893) TCGA-DD-AACQ-01 17 48263006 48263006 G C COL1A1 Missense_Mutation p.H1418D 0.18 unknown(0) TCGA-DD-AACQ-01 17 722716 722716 G C NXN Silent p.A261A 0.81 TCGA-DD-AACQ-01 17 74737121 74737121 A C MFSD11 Missense_Mutation p.M79L 0.49 tolerated(0.05) benign(0.162) TCGA-DD-AACQ-01 17 7577595 7577598 CAGT - TP53 Frame_Shift_Del p.D228Vfs*18 0.73 TCGA-DD-AACQ-01 17 79167868 79167868 T A AZI1 Nonsense_Mutation p.K727* 0.05 TCGA-DD-AACQ-01 17 7983455 7983455 T A AC129492.6 Missense_Mutation p.C46S 0.82 benign(0) TCGA-DD-AACQ-01 18 14184268 14184268 A T ANKRD20A5P Intron 0.37 TCGA-DD-AACQ-01 18 2762178 2762178 A T SMCHD1 Missense_Mutation p.N1504Y 0.26 tolerated(0.24) probably_damaging(0.999) TCGA-DD-AACQ-01 18 31319940 31319940 A G ASXL3 Missense_Mutation p.T858A 0.44 benign(0.001) TCGA-DD-AACQ-01 18 32953553 32953553 T C ZNF396 Silent p.G143G 0.06 TCGA-DD-AACQ-01 18 43497668 43497668 T A EPG5 Missense_Mutation p.Q1072L 0.41 deleterious(0.03) possibly_damaging(0.888) TCGA-DD-AACQ-01 19 10610421 10610421 T A KEAP1 Nonsense_Mutation p.K97* 0.73 TCGA-DD-AACQ-01 19 11034009 11034009 G C YIPF2 Missense_Mutation p.I303M 0.50 tolerated(0.11) benign(0.124) TCGA-DD-AACQ-01 19 14104453 14104453 G A RFX1 Missense_Mutation p.P68L 0.06 deleterious_low_confidence(0) benign(0.204) TCGA-DD-AACQ-01 19 15221086 15221086 T A SYDE1 Silent p.L334L 0.32 TCGA-DD-AACQ-01 19 15918741 15918741 A T OR10H1 Missense_Mutation p.L36Q 0.44 deleterious(0) probably_damaging(0.996) TCGA-DD-AACQ-01 19 21991782 21991782 G T ZNF43 Missense_Mutation p.Q353K 0.28 tolerated(0.3) possibly_damaging(0.475) TCGA-DD-AACQ-01 19 33470954 33470954 T G RHPN2 Missense_Mutation p.K670T 0.20 deleterious(0.01) possibly_damaging(0.557) TCGA-DD-AACQ-01 19 38187741 38187741 T A ZNF607 3'UTR 0.40 TCGA-DD-AACQ-01 19 38973749 38973749 A T RYR1 Missense_Mutation p.Q1568L 0.45 benign(0.002) TCGA-DD-AACQ-01 19 42713986 42713986 G A DEDD2 Missense_Mutation p.P152L 0.38 tolerated(0.22) benign(0.001) TCGA-DD-AACQ-01 19 4294634 4294634 A T TMIGD2 Silent p.A164A 0.77 TCGA-DD-AACQ-01 19 44674186 44674186 A T ZNF226 Splice_Site 0.48 TCGA-DD-AACQ-01 19 45204686 45204686 C T CEACAM16 5'UTR 0.28 TCGA-DD-AACQ-01 19 45731442 45731442 A T EXOC3L2 Missense_Mutation p.L58Q 0.41 deleterious(0) probably_damaging(0.989) TCGA-DD-AACQ-01 19 46733033 46733033 T A IGFL1 Translation_Start_Site p.M1? 0.43 deleterious(0) probably_damaging(0.991) TCGA-DD-AACQ-01 19 46916455 46916455 A T CCDC8 5'UTR 0.49 TCGA-DD-AACQ-01 19 49868854 49868854 A T DKKL1 Missense_Mutation p.Q91L 0.49 deleterious_low_confidence(0.03) benign(0.108) TCGA-DD-AACQ-01 19 49901341 49901341 T A CCDC155 Silent p.A190A 0.42 TCGA-DD-AACQ-01 19 50463581 50463581 A T SIGLEC11 Nonsense_Mutation p.C186* 0.25 TCGA-DD-AACQ-01 19 53571266 53571266 T C ZNF160 3'UTR 0.44 TCGA-DD-AACQ-01 1 109812061 109812061 G - CELSR2 Frame_Shift_Del p.I2277Sfs*7 0.32 TCGA-DD-AACQ-01 1 109839480 109839480 C T MYBPHL Missense_Mutation p.V219I 0.44 tolerated(0.13) benign(0.415) TCGA-DD-AACQ-01 1 109856532 109856532 G C SORT1 3'UTR 0.38 TCGA-DD-AACQ-01 1 110294361 110294361 G T EPS8L3 Missense_Mutation p.A494E 0.35 tolerated(0.68) benign(0.006) TCGA-DD-AACQ-01 1 11087660 11087686 CCTCCATATATACGCCCTCCTGTTGTG - MASP2 In_Frame_Del p.T440_G448del 0.32 TCGA-DD-AACQ-01 1 11301649 11301649 A T MTOR Missense_Mutation p.I501N 0.32 deleterious(0) benign(0.34) TCGA-DD-AACQ-01 1 114646329 114646329 C T SYT6 Silent p.L277L 0.42 TCGA-DD-AACQ-01 1 118539254 118539254 T - SPAG17 Frame_Shift_Del p.N1630Ifs*31 0.32 TCGA-DD-AACQ-01 1 118558796 118558796 T G SPAG17 Missense_Mutation p.H1360P 0.44 tolerated(0.06) benign(0.06) TCGA-DD-AACQ-01 1 120839624 120839624 G A FAM72B 5'UTR 0.08 TCGA-DD-AACQ-01 1 144930752 144930752 T A PDE4DIP Intron 0.15 TCGA-DD-AACQ-01 1 145475239 145475239 A T ANKRD34A 3'UTR 0.32 TCGA-DD-AACQ-01 1 150722488 150722488 T A CTSS Nonsense_Mutation p.R263* 0.40 TCGA-DD-AACQ-01 1 153276487 153276487 T G PGLYRP3 Splice_Site p.X126_splice 0.38 TCGA-DD-AACQ-01 1 154407475 154407475 A T IL6R Missense_Mutation p.D217V 0.34 deleterious(0) probably_damaging(1) TCGA-DD-AACQ-01 1 156640210 156640210 C A NES Missense_Mutation p.G1257V 0.36 deleterious(0.02) possibly_damaging(0.489) TCGA-DD-AACQ-01 1 156838010 156838011 GC A NTRK1 Frame_Shift_Del p.L183Wfs*14 0.16 TCGA-DD-AACQ-01 1 159166681 159166681 C - CADM3 Frame_Shift_Del p.Q297Sfs*14 0.23 TCGA-DD-AACQ-01 1 160136476 160136476 T A ATP1A4 Missense_Mutation p.D402E 0.26 deleterious(0) probably_damaging(0.998) TCGA-DD-AACQ-01 1 164768945 164768945 G A PBX1 Missense_Mutation p.E174K 0.25 deleterious(0.02) probably_damaging(0.983) TCGA-DD-AACQ-01 1 171761248 171761248 T A METTL13 Silent p.A522A 0.21 TCGA-DD-AACQ-01 1 172102268 172102268 A T DNM3 Intron 0.33 TCGA-DD-AACQ-01 1 17280852 17280852 G T CROCC Silent p.R1107R 0.45 TCGA-DD-AACQ-01 1 17395717 17395717 T A PADI2 Missense_Mutation p.Q607L 0.05 tolerated(0.53) benign(0.004) TCGA-DD-AACQ-01 1 17975106 17975106 C G ARHGEF10L Missense_Mutation p.P777R 0.08 tolerated(0.11) probably_damaging(0.972) TCGA-DD-AACQ-01 1 180885579 180885579 A G KIAA1614 Missense_Mutation p.K114E 0.30 deleterious(0.03) possibly_damaging(0.879) TCGA-DD-AACQ-01 1 182025741 182025741 T A ZNF648 Missense_Mutation p.I469F 0.28 deleterious(0) probably_damaging(0.997) TCGA-DD-AACQ-01 1 183209229 183209229 A T LAMC2 Missense_Mutation p.M1042L 0.28 tolerated(1) benign(0.001) TCGA-DD-AACQ-01 1 19201873 19201873 C T ALDH4A1 Intron 0.45 TCGA-DD-AACQ-01 1 196965322 196965322 A T CFHR5 Missense_Mutation p.M321L 0.32 tolerated(0.12) benign(0) TCGA-DD-AACQ-01 1 204226522 204226522 G A PLEKHA6 Missense_Mutation p.P495S 0.35 deleterious(0) possibly_damaging(0.682) TCGA-DD-AACQ-01 1 205760503 205760503 T A SLC41A1 3'UTR 0.19 TCGA-DD-AACQ-01 1 206225342 206225342 A T AVPR1B Missense_Mutation p.Q301L 0.21 deleterious(0) possibly_damaging(0.903) TCGA-DD-AACQ-01 1 228482634 228482634 A T OBSCN Missense_Mutation p.Q4279L 0.30 probably_damaging(0.965) TCGA-DD-AACQ-01 1 232945991 232945991 A T MAP10 3'UTR 0.25 TCGA-DD-AACQ-01 1 24486039 24486039 T A IFNLR1 Nonsense_Mutation p.R199* 0.35 TCGA-DD-AACQ-01 1 245851010 245851010 T A KIF26B Silent p.A1575A 0.28 TCGA-DD-AACQ-01 1 247150226 247150226 T A ZNF695 3'UTR 0.34 TCGA-DD-AACQ-01 1 247835424 247835424 T A OR13G1 Missense_Mutation p.H307L 0.21 deleterious(0.02) benign(0.041) TCGA-DD-AACQ-01 1 248789949 248789949 T A OR2T11 Missense_Mutation p.M161L 0.39 tolerated(0.35) probably_damaging(0.96) TCGA-DD-AACQ-01 1 27176859 27176859 C T ZDHHC18 Silent p.Y238Y 0.45 TCGA-DD-AACQ-01 1 32149574 32149574 G A COL16A1 Missense_Mutation p.P772S 0.37 unknown(0) TCGA-DD-AACQ-01 1 35884117 35884117 T C ZMYM4 Silent p.N1461N 0.50 TCGA-DD-AACQ-01 1 41094561 41094561 T A RIMS3 Missense_Mutation p.K212M 0.42 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-DD-AACQ-01 1 45340421 45340421 T A EIF2B3 Silent p.S377S 0.49 TCGA-DD-AACQ-01 1 55266932 55266932 C A TTC22 5'UTR 0.54 TCGA-DD-AACQ-01 1 6211179 6211179 T A CHD5 Missense_Mutation p.S303C 0.33 deleterious(0.01) possibly_damaging(0.469) TCGA-DD-AACQ-01 1 62740090 62740090 T A KANK4 Missense_Mutation p.Q229L 0.39 tolerated(0.79) benign(0) TCGA-DD-AACQ-01 1 64709940 64709940 A G UBE2U 3'UTR 0.45 TCGA-DD-AACQ-01 1 6641168 6641168 A T ZBTB48 Nonsense_Mutation p.R167* 0.42 TCGA-DD-AACQ-01 1 70503923 70503923 T C LRRC7 Missense_Mutation p.W768R 0.36 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DD-AACQ-01 1 76228541 76228541 A T ACADM 3'Flank 0.48 TCGA-DD-AACQ-01 1 95712212 95712212 A T RWDD3 Missense_Mutation p.R230W 0.42 deleterious(0.01) probably_damaging(0.988) TCGA-DD-AACQ-01 20 20071622 20071622 T A C20orf26 Splice_Site p.X233_splice 0.44 TCGA-DD-AACQ-01 20 210384 210384 T A DEFB129 Missense_Mutation p.L175Q 0.32 tolerated_low_confidence(0.31) benign(0.02) TCGA-DD-AACQ-01 20 34091356 34091356 A T CEP250 Missense_Mutation p.Q1720L 0.36 possibly_damaging(0.877) TCGA-DD-AACQ-01 20 44141486 44141486 T A SPINT3 Splice_Site p.X26_splice 0.45 TCGA-DD-AACQ-01 20 61916216 61916216 A T ARFGAP1 Splice_Site p.X250_splice 0.32 TCGA-DD-AACQ-01 20 61943819 61943819 T A COL20A1 Silent p.S617S 0.35 TCGA-DD-AACQ-01 20 61948029 61948038 GACAAGACGG - COL20A1 Frame_Shift_Del p.T884Sfs*35 0.28 TCGA-DD-AACQ-01 20 62701907 62701907 C T TCEA2 Silent p.H246H 0.31 TCGA-DD-AACQ-01 20 9560941 9560941 T A PAK7 Missense_Mutation p.T281S 0.44 tolerated(0.75) benign(0.002) TCGA-DD-AACQ-01 22 21351673 21351673 G A LZTR1 3'UTR 0.50 TCGA-DD-AACQ-01 22 21384217 21384217 A T SLC7A4 Nonsense_Mutation p.L469* 0.36 TCGA-DD-AACQ-01 22 24836868 24836881 CGGGGGAGCGGGCA T ADORA2A Frame_Shift_Del p.P217Lfs*63 0.50 TCGA-DD-AACQ-01 22 24836881 24836881 A T ADORA2A Silent p.A221A 0.47 TCGA-DD-AACQ-01 22 37333867 37333867 G T CSF2RB Missense_Mutation p.G673C 0.51 tolerated(0.12) benign(0.05) TCGA-DD-AACQ-01 22 50943406 50943406 T A LMF2 Missense_Mutation p.Y421F 0.32 tolerated(0.43) benign(0.074) TCGA-DD-AACQ-01 2 106694449 106694449 A T C2orf40 3'UTR 0.45 TCGA-DD-AACQ-01 2 116257157 116257157 T C DPP10 Silent p.L119L 0.43 TCGA-DD-AACQ-01 2 143718311 143718311 C T KYNU Missense_Mutation p.P234L 0.44 deleterious(0.03) possibly_damaging(0.664) TCGA-DD-AACQ-01 2 160884730 160884730 A T PLA2R1 Silent p.V366V 0.45 TCGA-DD-AACQ-01 2 165793884 165793884 C T SLC38A11 Missense_Mutation p.R142K 0.14 tolerated(0.1) benign(0.439) TCGA-DD-AACQ-01 2 166781090 166781090 G C TTC21B Silent p.V495V 0.04 TCGA-DD-AACQ-01 2 170062841 170062841 T A LRP2 Silent p.S2463S 0.46 TCGA-DD-AACQ-01 2 170386325 170386325 T A FASTKD1 3'UTR 0.37 TCGA-DD-AACQ-01 2 179428033 179428033 A T TTN Missense_Mutation p.V27609D 0.33 TCGA-DD-AACQ-01 2 179436145 179436145 G A TTN Missense_Mutation p.P24905L 0.32 TCGA-DD-AACQ-01 2 179605680 179605680 A T TTN Missense_Mutation p.Y4094N 0.36 TCGA-DD-AACQ-01 2 205912302 205912302 A T PARD3B Splice_Site p.X132_splice 0.48 TCGA-DD-AACQ-01 2 220104515 220104515 A T GLB1L Nonsense_Mutation p.Y254* 0.47 TCGA-DD-AACQ-01 2 220344852 220344852 A T SPEG Missense_Mutation p.T1778S 0.42 possibly_damaging(0.68) TCGA-DD-AACQ-01 2 220501121 220501121 T A SLC4A3 Silent p.L790L 0.33 TCGA-DD-AACQ-01 2 220506624 220506624 T C SLC4A3 3'UTR 0.15 TCGA-DD-AACQ-01 2 234296973 234296973 A T DGKD Missense_Mutation p.K76M 0.42 deleterious(0.04) probably_damaging(0.998) TCGA-DD-AACQ-01 2 234750574 234750574 G T HJURP Silent p.S284S 0.05 TCGA-DD-AACQ-01 2 241570348 241570348 T A GPR35 3'UTR 0.40 TCGA-DD-AACQ-01 2 242181952 242181952 C G HDLBP Missense_Mutation p.D698H 0.05 deleterious(0) possibly_damaging(0.697) TCGA-DD-AACQ-01 2 27804758 27804758 A C C2orf16 Missense_Mutation p.R1773S 0.21 tolerated(0.89) benign(0.017) TCGA-DD-AACQ-01 2 27804762 27804762 C T C2orf16 Missense_Mutation p.R1775C 0.25 tolerated(0.14) benign(0.052) TCGA-DD-AACQ-01 2 33007745 33007745 A T TTC27 Missense_Mutation p.K611I 0.41 deleterious(0) probably_damaging(0.999) TCGA-DD-AACQ-01 2 37255261 37255261 C G HEATR5B Missense_Mutation p.D1220H 0.38 deleterious(0.01) possibly_damaging(0.887) TCGA-DD-AACQ-01 2 37415605 37415605 A T SULT6B1 Missense_Mutation p.L22Q 0.44 deleterious(0) probably_damaging(0.995) TCGA-DD-AACQ-01 2 64174560 64174560 T A VPS54 Missense_Mutation p.Y401F 0.04 tolerated(0.22) benign(0.395) TCGA-DD-AACQ-01 2 70377406 70377406 T A C2orf42 3'UTR 0.25 TCGA-DD-AACQ-01 2 71058314 71058314 T A CD207 Missense_Mutation p.E285V 0.29 deleterious(0) probably_damaging(0.995) TCGA-DD-AACQ-01 2 85780558 85780558 T A GGCX Nonsense_Mutation p.K318* 0.40 TCGA-DD-AACQ-01 2 9520899 9520899 A T ASAP2 Missense_Mutation p.I660F 0.58 deleterious(0.01) benign(0.033) TCGA-DD-AACQ-01 3 108407715 108407715 A T DZIP3 Missense_Mutation p.N1154Y 0.46 tolerated(0.28) possibly_damaging(0.72) TCGA-DD-AACQ-01 3 11300933 11300933 G A HRH1 Silent p.S70S 0.37 TCGA-DD-AACQ-01 3 123419013 123419013 T A MYLK Missense_Mutation p.K1101M 0.54 deleterious(0.03) possibly_damaging(0.695) TCGA-DD-AACQ-01 3 128356921 128356921 T A RPN1 Silent p.P118P 0.50 TCGA-DD-AACQ-01 3 142268433 142268433 T A ATR Missense_Mutation p.Q1020L 0.45 tolerated(0.26) benign(0.206) TCGA-DD-AACQ-01 3 148558490 148558490 T A CPB1 Missense_Mutation p.L97Q 0.43 deleterious(0) probably_damaging(0.963) TCGA-DD-AACQ-01 3 16450985 16450985 T A RFTN1 Missense_Mutation p.Q113L 0.46 tolerated(0.14) probably_damaging(0.928) TCGA-DD-AACQ-01 3 182871558 182871558 T A LAMP3 Missense_Mutation p.K224M 0.41 deleterious(0) probably_damaging(0.971) TCGA-DD-AACQ-01 3 38180513 38180513 A T MYD88 Missense_Mutation p.S121C 0.38 tolerated(0.19) possibly_damaging(0.818) TCGA-DD-AACQ-01 3 47614356 47614356 G A CSPG5 Missense_Mutation p.T401M 0.43 deleterious(0) probably_damaging(0.999) TCGA-DD-AACQ-01 3 47889323 47889323 A G DHX30 Silent p.P721P 0.39 TCGA-DD-AACQ-01 3 57135384 57135384 T A IL17RD Silent p.I329I 0.37 TCGA-DD-AACQ-01 3 9547751 9547751 G C LHFPL4 Missense_Mutation p.I181M 0.08 tolerated(0.07) possibly_damaging(0.812) TCGA-DD-AACQ-01 3 9935199 9935199 C T JAGN1 3'UTR 0.38 TCGA-DD-AACQ-01 4 119256640 119256640 T A PRSS12 Missense_Mutation p.S270C 0.45 deleterious(0.01) possibly_damaging(0.838) TCGA-DD-AACQ-01 4 128819807 128819807 A C PLK4 3'UTR 0.50 TCGA-DD-AACQ-01 4 156634263 156634263 A T GUCY1A3 Missense_Mutation p.K367I 0.83 deleterious(0) probably_damaging(0.979) TCGA-DD-AACQ-01 4 159573014 159573014 G T RXFP1 Missense_Mutation p.R694L 0.06 tolerated(0.07) benign(0.002) TCGA-DD-AACQ-01 4 25664328 25664328 A T SLC34A2 Silent p.T38T 0.49 TCGA-DD-AACQ-01 4 40351387 40351387 T C CHRNA9 Missense_Mutation p.M285T 0.34 deleterious(0) possibly_damaging(0.88) TCGA-DD-AACQ-01 4 55127497 55127497 A T PDGFRA Silent p.T95T 0.45 TCGA-DD-AACQ-01 4 5570231 5570231 T A EVC2 Missense_Mutation p.H1166L 0.46 tolerated(0.06) possibly_damaging(0.478) TCGA-DD-AACQ-01 4 5868428 5868428 T A CRMP1 Missense_Mutation p.Y146F 0.42 tolerated(0.4) benign(0.003) TCGA-DD-AACQ-01 4 85678264 85678264 T A WDFY3 Missense_Mutation p.N1747Y 0.45 deleterious(0.02) possibly_damaging(0.79) TCGA-DD-AACQ-01 4 86491791 86491791 G T ARHGAP24 Missense_Mutation p.V33F 0.51 deleterious(0) benign(0.248) TCGA-DD-AACQ-01 5 131398523 131398523 A T IL3 3'UTR 0.06 TCGA-DD-AACQ-01 5 135188296 135188296 T A SLC25A48 Silent p.I69I 0.37 TCGA-DD-AACQ-01 5 13737537 13737537 A T DNAH5 Missense_Mutation p.L3760Q 0.38 probably_damaging(0.928) TCGA-DD-AACQ-01 5 140730033 140730033 A T PCDHGB1 Missense_Mutation p.E69V 0.46 deleterious(0.03) possibly_damaging(0.809) TCGA-DD-AACQ-01 5 141038013 141038013 T A ARAP3 Missense_Mutation p.N1149Y 0.42 deleterious(0) probably_damaging(0.98) TCGA-DD-AACQ-01 5 162917465 162917465 A T HMMR Missense_Mutation p.N678Y 0.41 tolerated(0.22) probably_damaging(0.971) TCGA-DD-AACQ-01 5 16779678 16779678 G C MYO10 Missense_Mutation p.D302E 0.42 deleterious(0) probably_damaging(0.994) TCGA-DD-AACQ-01 5 16779718 16779718 A T MYO10 Nonsense_Mutation p.L289* 0.46 TCGA-DD-AACQ-01 5 178553054 178553054 A T ADAMTS2 Missense_Mutation p.S899T 0.31 tolerated(0.05) benign(0.005) TCGA-DD-AACQ-01 5 50129842 50129842 C T PARP8 Silent p.F779F 0.45 TCGA-DD-AACQ-01 5 58120945 58120945 G T RAB3C Missense_Mutation p.R151L 0.40 deleterious(0.01) possibly_damaging(0.855) TCGA-DD-AACQ-01 5 60839300 60839300 G T ZSWIM6 Missense_Mutation p.S935I 0.07 deleterious(0.03) benign(0.187) TCGA-DD-AACQ-01 6 107390113 107390113 T A BEND3 Missense_Mutation p.Y761F 0.42 tolerated(0.06) probably_damaging(0.998) TCGA-DD-AACQ-01 6 13053698 13053698 A T PHACTR1 Missense_Mutation p.R118W 0.28 deleterious(0) possibly_damaging(0.827) TCGA-DD-AACQ-01 6 132966654 132966654 T A TAAR1 Silent p.L163L 0.44 TCGA-DD-AACQ-01 6 170104258 170104258 T G C6orf120 3'UTR 0.50 TCGA-DD-AACQ-01 6 17616802 17616802 C A NUP153 Silent p.S1433S 0.36 TCGA-DD-AACQ-01 6 30035217 30035217 G T PPP1R11 Missense_Mutation p.E10D 0.46 tolerated(0.07) benign(0.122) TCGA-DD-AACQ-01 6 30899302 30899302 T C SFTA2 Missense_Mutation p.H67R 0.34 tolerated(0.15) benign(0.402) TCGA-DD-AACQ-01 6 38697676 38697676 A T DNAH8 Intron 0.45 TCGA-DD-AACQ-01 6 4937882 4937882 C G CDYL Silent p.V344V 0.59 TCGA-DD-AACQ-01 6 4996253 4996253 T A RPP40 Missense_Mutation p.K275N 0.24 tolerated(0.09) benign(0.021) TCGA-DD-AACQ-01 6 54130765 54130765 A T MLIP 3'UTR 0.36 TCGA-DD-AACQ-01 6 80196733 80196733 T A LCA5 Silent p.V694V 0.41 TCGA-DD-AACQ-01 7 116423438 116423438 A T MET Missense_Mutation p.H1256L 0.41 deleterious(0.01) probably_damaging(0.98) TCGA-DD-AACQ-01 7 127894673 127894673 T A LEP Missense_Mutation p.W121R 0.53 tolerated(0.88) benign(0.001) TCGA-DD-AACQ-01 7 149317021 149317021 T A ZNF767 RNA 0.44 TCGA-DD-AACQ-01 7 149488699 149488699 G T SSPO RNA 0.52 TCGA-DD-AACQ-01 7 150033922 150033922 C A LRRC61 5'UTR 0.32 TCGA-DD-AACQ-01 7 2020106 2020106 T A MAD1L1 Missense_Mutation p.E496V 0.36 deleterious(0) possibly_damaging(0.904) TCGA-DD-AACQ-01 7 20662900 20662900 G C ABCB5 5'UTR 0.03 TCGA-DD-AACQ-01 7 21857905 21857905 A T DNAH11 Missense_Mutation p.I3554L 0.48 benign(0.011) TCGA-DD-AACQ-01 7 30961780 30961780 C T AQP1 Missense_Mutation p.R162C 0.51 deleterious(0.05) possibly_damaging(0.681) TCGA-DD-AACQ-01 7 31614332 31614332 G A CCDC129 Missense_Mutation p.D218N 0.03 tolerated(0.06) possibly_damaging(0.515) TCGA-DD-AACQ-01 7 35077464 35077464 A T DPY19L1 Silent p.P15P 0.33 TCGA-DD-AACQ-01 7 6000480 6000480 T A RSPH10B Missense_Mutation p.N139Y 0.64 deleterious(0) probably_damaging(1) TCGA-DD-AACQ-01 7 72023766 72023766 T A TYW1B RNA 0.33 TCGA-DD-AACQ-01 7 81589122 81589122 A T CACNA2D1 Missense_Mutation p.M997K 0.39 tolerated(0.77) benign(0.048) TCGA-DD-AACQ-01 7 92734072 92734072 T C SAMD9 Missense_Mutation p.N447D 0.42 tolerated(0.57) benign(0) TCGA-DD-AACQ-01 7 99798553 99798553 G C STAG3 Silent p.L674L 0.17 TCGA-DD-AACQ-01 8 102381413 102381413 A T NACAP1 RNA 0.39 TCGA-DD-AACQ-01 8 125107154 125107154 T C FER1L6 Missense_Mutation p.Y1524H 0.39 tolerated(0.3) benign(0.063) TCGA-DD-AACQ-01 8 139323154 139323154 C G FAM135B Missense_Mutation p.Q29H 0.37 tolerated(0.07) benign(0.022) TCGA-DD-AACQ-01 8 144126142 144126142 A T C8orf31 Missense_Mutation p.Q88L 0.39 tolerated_low_confidence(0.65) unknown(0) TCGA-DD-AACQ-01 8 144696547 144696547 T A TSTA3 Missense_Mutation p.N181Y 0.38 deleterious(0) possibly_damaging(0.718) TCGA-DD-AACQ-01 8 24178961 24178961 G T ADAM28 Intron 0.65 TCGA-DD-AACQ-01 8 37821737 37821737 T A ADRB3 Nonstop_Mutation p.*409Lext*2 0.77 TCGA-DD-AACQ-01 8 42587110 42587110 T C CHRNB3 Silent p.Y220Y 0.44 TCGA-DD-AACQ-01 8 56436483 56436483 C A XKR4 Silent p.S550S 0.45 TCGA-DD-AACQ-01 8 67356642 67356642 A T ADHFE1 Missense_Mutation p.K62M 0.23 deleterious(0.01) possibly_damaging(0.778) TCGA-DD-AACQ-01 8 72129021 72129021 A T EYA1 Silent p.T422T 0.30 TCGA-DD-AACQ-01 9 100124601 100124601 A T CCDC180 Silent p.S1304S 0.60 TCGA-DD-AACQ-01 9 124530758 124530758 A T DAB2IP Missense_Mutation p.E554V 0.40 deleterious(0) probably_damaging(0.932) TCGA-DD-AACQ-01 9 124906563 124906563 T A NDUFA8 Missense_Mutation p.Q159L 0.44 tolerated(0.11) benign(0.017) TCGA-DD-AACQ-01 9 125240003 125240003 A T OR1J1 Missense_Mutation p.L68H 0.35 deleterious_low_confidence(0) possibly_damaging(0.808) TCGA-DD-AACQ-01 9 125281724 125281724 A G OR1J4 Missense_Mutation p.Y102C 0.39 deleterious_low_confidence(0.02) benign(0.216) TCGA-DD-AACQ-01 9 13138124 13138124 T C MPDZ Silent p.L1344L 0.44 TCGA-DD-AACQ-01 9 131678666 131678666 C A LRRC8A 3'UTR 0.07 TCGA-DD-AACQ-01 9 138235232 138235233 TG A C9orf62 5'UTR 0.30 TCGA-DD-AACQ-01 9 139566450 139566450 G C EGFL7 Missense_Mutation p.G237R 0.45 tolerated(0.1) benign(0.363) TCGA-DD-AACQ-01 9 19408986 19408986 C T ACER2 5'Flank 0.21 TCGA-DD-AACQ-01 9 37740889 37740889 G A FRMPD1 Intron 0.44 TCGA-DD-AACQ-01 9 439312 439312 G T DOCK8 Missense_Mutation p.G1716V 0.46 deleterious(0) probably_damaging(1) TCGA-DD-AACQ-01 9 80851282 80851282 A T CEP78 Nonsense_Mutation p.K6* 0.52 TCGA-DD-AACQ-01 X 13803759 13803759 T A GPM6B Missense_Mutation p.H117L 0.88 tolerated(0.18) benign(0.033) TCGA-DD-AACQ-01 X 152227798 152227798 G T PNMA3 3'UTR 0.05 TCGA-DD-AACQ-01 X 153128941 153128941 C A L1CAM Missense_Mutation p.G1174V 0.86 deleterious(0.01) probably_damaging(0.997) TCGA-DD-AACQ-01 X 16170727 16170727 A T GRPR Missense_Mutation p.S372C 0.78 deleterious(0.03) probably_damaging(0.962) TCGA-DD-AACQ-01 X 18627562 18627608 TATAAATTTCTTTCCTGCCTCAGGGTGGAGTGTATCATGACCCACAC - CDKL5 Splice_Site p.X683_splice 0.88 TCGA-DD-AACQ-01 X 3241470 3241470 T A MXRA5 Missense_Mutation p.K752N 0.80 deleterious(0.01) possibly_damaging(0.738) TCGA-DD-AACQ-01 X 51151520 51151520 T A CXorf67 3'UTR 0.86 TCGA-DD-AACQ-01 X 71549447 71549447 T A HDAC8 3'UTR 0.82 TCGA-DD-AACQ-01 X 83128059 83128059 T C CYLC1 Missense_Mutation p.Y115H 0.86 tolerated(0.12) possibly_damaging(0.858) TCGA-DD-AACS-01 10 135438731 135438731 C T FRG2B Missense_Mutation p.A237T 0.46 deleterious(0) benign(0.008) TCGA-DD-AACS-01 10 15820882 15820882 T A FAM188A 3'UTR 0.30 TCGA-DD-AACS-01 10 63852733 63852733 C G ARID5B Missense_Mutation p.Q1171E 0.53 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-DD-AACS-01 10 70192255 70192255 G A DNA2 Silent p.V639V 0.39 TCGA-DD-AACS-01 10 76867822 76867822 G T DUSP13 Intron 0.42 TCGA-DD-AACS-01 11 2416745 2416745 G A CD81 Missense_Mutation p.E152K 0.50 tolerated(0.83) benign(0.184) TCGA-DD-AACS-01 11 40137427 40137427 A G LRRC4C Missense_Mutation p.I139T 0.36 deleterious(0) probably_damaging(0.972) TCGA-DD-AACS-01 11 78387281 78387281 G A TENM4 Silent p.I1804I 0.38 TCGA-DD-AACS-01 11 9452513 9452513 T G IPO7 Missense_Mutation p.I615S 0.38 deleterious(0) possibly_damaging(0.754) TCGA-DD-AACS-01 12 111744831 111744831 G A CUX2 Missense_Mutation p.S322N 0.37 tolerated(0.61) benign(0) TCGA-DD-AACS-01 12 113303258 113303258 G A RPH3A Silent p.V90V 0.40 TCGA-DD-AACS-01 12 6981831 6981831 G A SPSB2 Missense_Mutation p.R79W 0.42 deleterious(0) probably_damaging(1) TCGA-DD-AACS-01 12 70970168 70970168 G A PTPRB Missense_Mutation p.R946W 0.27 deleterious(0.05) benign(0.249) TCGA-DD-AACS-01 13 32526769 32526769 A G EEF1DP3 RNA 0.67 TCGA-DD-AACS-01 14 102918935 102918935 A G TECPR2 Missense_Mutation p.H1204R 0.67 tolerated(0.15) benign(0.063) TCGA-DD-AACS-01 14 20296122 20296122 A T OR4N2 Missense_Mutation p.N172I 0.26 deleterious(0) probably_damaging(0.967) TCGA-DD-AACS-01 14 29237712 29237712 G A FOXG1 Silent p.L409L 0.36 TCGA-DD-AACS-01 14 39601242 39601244 AAG - GEMIN2 In_Frame_Del p.R240del 0.34 TCGA-DD-AACS-01 14 53194276 53194276 G T PSMC6 Missense_Mutation p.V385F 0.68 deleterious(0) probably_damaging(0.97) TCGA-DD-AACS-01 14 63483654 63483654 C T KCNH5 Missense_Mutation p.G31E 0.79 deleterious(0) probably_damaging(1) TCGA-DD-AACS-01 15 42145951 42145951 C T SPTBN5 Missense_Mutation p.R3270Q 0.47 benign(0.036) TCGA-DD-AACS-01 15 48634443 48634444 - A DUT 3'UTR 0.19 TCGA-DD-AACS-01 16 2336731 2336731 C T ABCA3 Missense_Mutation p.R1081Q 0.21 tolerated(0.47) benign(0.107) TCGA-DD-AACS-01 16 53488620 53488620 G C RBL2 Missense_Mutation p.D349H 0.91 deleterious(0) probably_damaging(0.999) TCGA-DD-AACS-01 17 17061859 17061859 G A MPRIP Missense_Mutation p.R530H 0.58 deleterious(0.01) benign(0.289) TCGA-DD-AACS-01 17 45507195 45507195 C G EFCAB13 Missense_Mutation p.L836V 0.09 tolerated(0.06) possibly_damaging(0.509) TCGA-DD-AACS-01 17 7578554 7578554 A T TP53 Missense_Mutation p.Y126N 0.92 deleterious(0) probably_damaging(1) TCGA-DD-AACS-01 19 1235018 1235018 G A C19orf26 Missense_Mutation p.T146M 0.42 deleterious(0) possibly_damaging(0.676) TCGA-DD-AACS-01 19 3959045 3959045 C A DAPK3 3'UTR 0.29 TCGA-DD-AACS-01 19 51920435 51920435 C T SIGLEC10 Missense_Mutation p.A108T 0.40 deleterious(0.01) possibly_damaging(0.867) TCGA-DD-AACS-01 1 114215993 114215993 G T MAGI3 Missense_Mutation p.G1032V 0.42 deleterious(0) probably_damaging(1) TCGA-DD-AACS-01 1 158648305 158648305 G C SPTA1 Missense_Mutation p.P233R 0.50 tolerated(0.28) possibly_damaging(0.579) TCGA-DD-AACS-01 1 170511624 170511636 CCCCCTAGGCAAG A GORAB Splice_Site p.X165_splice 0.17 TCGA-DD-AACS-01 1 180166572 180166572 G A QSOX1 3'UTR 0.68 TCGA-DD-AACS-01 1 19571434 19571434 C A EMC1 Silent p.V62V 0.42 TCGA-DD-AACS-01 1 207228111 207228111 A G PFKFB2 Missense_Mutation p.K17E 0.24 benign(0.001) TCGA-DD-AACS-01 1 211654728 211654728 G A RD3 Silent p.N10N 0.27 TCGA-DD-AACS-01 1 21799392 21799392 G C NBPF3 Missense_Mutation p.E240Q 0.10 tolerated(0.05) benign(0.24) TCGA-DD-AACS-01 1 248343509 248343509 C G OR2M2 Missense_Mutation p.I74M 0.23 tolerated(0.06) probably_damaging(0.928) TCGA-DD-AACS-01 1 26349075 26349090 CTGCTCTTCCTGCTTG - EXTL1 5'UTR 0.34 TCGA-DD-AACS-01 1 33145241 33145241 G A RBBP4 Missense_Mutation p.A405T 0.43 tolerated(0.17) possibly_damaging(0.565) TCGA-DD-AACS-01 1 33145248 33145248 A T RBBP4 Missense_Mutation p.N407I 0.41 tolerated(0.07) benign(0.009) TCGA-DD-AACS-01 1 67340614 67340614 T C WDR78 Missense_Mutation p.Q217R 0.09 tolerated(0.59) benign(0.003) TCGA-DD-AACS-01 1 70504162 70504162 A G LRRC7 Silent p.R847R 0.45 TCGA-DD-AACS-01 2 175292534 175292534 G T SCRN3 Missense_Mutation p.V396L 0.52 tolerated(0.72) benign(0.001) TCGA-DD-AACS-01 2 95481108 95481108 G C ANKRD20A8P RNA 0.43 TCGA-DD-AACS-01 2 98852884 98852884 G T VWA3B Silent p.L820L 0.38 TCGA-DD-AACS-01 3 121416741 121416741 C T GOLGB1 Missense_Mutation p.E877K 0.58 benign(0.3) TCGA-DD-AACS-01 3 184298884 184298884 T A EPHB3 Missense_Mutation p.I888N 0.57 deleterious(0) possibly_damaging(0.766) TCGA-DD-AACS-01 3 50232232 50232232 C A GNAT1 Silent p.I299I 0.49 TCGA-DD-AACS-01 3 52472194 52472194 G T SEMA3G Silent p.R511R 0.40 TCGA-DD-AACS-01 3 74548873 74548873 C A CNTN3 Missense_Mutation p.G40V 0.05 deleterious(0.02) possibly_damaging(0.84) TCGA-DD-AACS-01 4 121706177 121706177 G C PRDM5 Missense_Mutation p.Q420E 0.59 tolerated(0.14) possibly_damaging(0.588) TCGA-DD-AACS-01 4 189061721 189061721 A G TRIML1 Missense_Mutation p.R150G 0.94 tolerated(0.07) benign(0.11) TCGA-DD-AACS-01 4 41984060 41984060 A T DCAF4L1 Missense_Mutation p.D84V 0.46 deleterious(0) possibly_damaging(0.71) TCGA-DD-AACS-01 4 5853138 5853138 G A CRMP1 Silent p.S293S 0.43 TCGA-DD-AACS-01 5 134907476 134907476 A T CXCL14 3'UTR 0.61 TCGA-DD-AACS-01 5 177021211 177021211 G A TMED9 Silent p.L161L 0.43 TCGA-DD-AACS-01 5 44388524 44388524 C A FGF10 Missense_Mutation p.K87N 0.31 tolerated(0.05) benign(0.127) TCGA-DD-AACS-01 6 153316444 153316444 A C MTRF1L Missense_Mutation p.L117R 0.39 tolerated(0.17) probably_damaging(0.962) TCGA-DD-AACS-01 6 29012190 29012190 T C OR2W1 Missense_Mutation p.I255V 0.49 tolerated(0.27) benign(0.032) TCGA-DD-AACS-01 7 57529237 57529237 G T ZNF716 Missense_Mutation p.C357F 0.44 deleterious(0) probably_damaging(0.998) TCGA-DD-AACS-01 7 97863048 97863048 T C TECPR1 Missense_Mutation p.T453A 0.32 tolerated(0.7) benign(0.001) TCGA-DD-AACS-01 8 110477316 110477316 T A PKHD1L1 Missense_Mutation p.V2752E 0.29 deleterious(0.04) benign(0.03) TCGA-DD-AACS-01 8 110577033 110577033 G A EBAG9 3'UTR 0.36 TCGA-DD-AACS-01 8 11637363 11637363 G A NEIL2 Missense_Mutation p.R132H 0.80 tolerated(0.14) benign(0.064) TCGA-DD-AACS-01 9 73028153 73028153 C T KLF9 Missense_Mutation p.V43M 0.42 tolerated(0.11) benign(0.058) TCGA-DD-AACT-01 10 102250575 102250575 T A SEC31B Silent p.A846A 0.38 TCGA-DD-AACT-01 10 103912138 103912138 A T NOLC1 5'UTR 0.14 TCGA-DD-AACT-01 10 104018779 104018779 C A GBF1 Silent p.T28T 0.26 TCGA-DD-AACT-01 10 111630571 111630572 - A XPNPEP1 Frame_Shift_Ins p.L538Ffs*5 0.19 TCGA-DD-AACT-01 10 13243528 13243528 C A MCM10 Nonsense_Mutation p.C783* 0.21 TCGA-DD-AACT-01 10 22605412 22605412 C T COMMD3 Silent p.S22S 0.26 TCGA-DD-AACT-01 10 31816120 31816120 A T ZEB1 Missense_Mutation p.Q1102H 0.25 deleterious_low_confidence(0.01) benign(0.216) TCGA-DD-AACT-01 10 64148324 64148324 A T ZNF365 Missense_Mutation p.S305C 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.893) TCGA-DD-AACT-01 10 70446431 70446431 A T TET1 Missense_Mutation p.N1791Y 0.34 deleterious(0.05) possibly_damaging(0.726) TCGA-DD-AACT-01 10 72358753 72358753 A T PRF1 Missense_Mutation p.C242S 0.25 deleterious(0) probably_damaging(0.998) TCGA-DD-AACT-01 10 82280420 82280420 A T TSPAN14 3'UTR 0.32 TCGA-DD-AACT-01 10 91099326 91099326 A T IFIT3 Missense_Mutation p.E305V 0.28 deleterious(0) possibly_damaging(0.796) TCGA-DD-AACT-01 10 93699802 93699802 C - BTAF1 Frame_Shift_Del p.P78Qfs*24 0.21 TCGA-DD-AACT-01 10 95338925 95338931 CACCTCC - FFAR4 Frame_Shift_Del p.H236Wfs*7 0.26 TCGA-DD-AACT-01 10 98111161 98111161 A T OPALIN Missense_Mutation p.S16T 0.31 tolerated_low_confidence(0.22) benign(0.294) TCGA-DD-AACT-01 10 98741566 98741566 A T C10orf12 Missense_Mutation p.K140M 0.26 deleterious(0) probably_damaging(0.998) TCGA-DD-AACT-01 10 99213301 99213301 T A ZDHHC16 Missense_Mutation p.C191S 0.42 deleterious(0) probably_damaging(0.996) TCGA-DD-AACT-01 11 102495988 102495988 A G MMP20 Silent p.T21T 0.31 TCGA-DD-AACT-01 11 111430883 111430883 G T LAYN Missense_Mutation p.Q283H 0.29 tolerated(0.12) benign(0.002) TCGA-DD-AACT-01 11 35219675 35219675 T A CD44 Silent p.S268S 0.28 TCGA-DD-AACT-01 11 406282 406282 T A SIGIRR Intron 0.28 TCGA-DD-AACT-01 11 47256218 47256218 A G DDB2 Missense_Mutation p.K233E 0.27 tolerated(0.69) benign(0.003) TCGA-DD-AACT-01 11 47823484 47823484 T C NUP160 Splice_Site p.X926_splice 0.33 TCGA-DD-AACT-01 11 55653597 55653597 A T TRIM51 Splice_Site p.X138_splice 0.33 TCGA-DD-AACT-01 11 62290643 62290643 T A AHNAK Missense_Mutation p.D3749V 0.23 probably_damaging(0.984) TCGA-DD-AACT-01 11 64563810 64563810 C A MAP4K2 Silent p.R562R 0.25 TCGA-DD-AACT-01 11 65349553 65349553 C T EHBP1L1 Silent p.T470T 0.23 TCGA-DD-AACT-01 11 66466555 66466555 T A SPTBN2 Splice_Site p.X1259_splice 0.29 TCGA-DD-AACT-01 11 69518447 69518447 G T FGF19 Silent p.G66G 0.48 TCGA-DD-AACT-01 11 77070041 77070041 T A PAK1 Missense_Mutation p.T167S 0.20 tolerated(0.64) benign(0.008) TCGA-DD-AACT-01 11 77070043 77070043 T A PAK1 Missense_Mutation p.E166V 0.21 tolerated(0.09) possibly_damaging(0.848) TCGA-DD-AACT-01 11 8662353 8662353 A G TRIM66 Silent p.H376H 0.21 TCGA-DD-AACT-01 11 92600067 92600067 G A FAT3 Missense_Mutation p.R3940Q 0.33 possibly_damaging(0.643) TCGA-DD-AACT-01 12 1137264 1137264 C T ERC1 Silent p.A65A 0.32 TCGA-DD-AACT-01 12 117657990 117657990 A T NOS1 Missense_Mutation p.C1388S 0.36 deleterious(0) possibly_damaging(0.709) TCGA-DD-AACT-01 12 121790260 121790260 A T ANAPC5 5'UTR 0.26 TCGA-DD-AACT-01 12 45417596 45417596 G A DBX2 Missense_Mutation p.S194F 0.23 deleterious(0) probably_damaging(0.999) TCGA-DD-AACT-01 12 48578987 48578987 C A C12orf68 3'UTR 0.30 TCGA-DD-AACT-01 12 53038715 53038715 C A KRT2 3'UTR 0.31 TCGA-DD-AACT-01 12 53454679 53454679 G T TENC1 Missense_Mutation p.D1007Y 0.26 deleterious(0.02) possibly_damaging(0.694) TCGA-DD-AACT-01 12 53460128 53460128 T A SPRYD3 Silent p.I388I 0.29 TCGA-DD-AACT-01 12 53608001 53608001 G A RARG Missense_Mutation p.R219C 0.19 deleterious(0) probably_damaging(1) TCGA-DD-AACT-01 12 54105826 54105826 T A CALCOCO1 Nonsense_Mutation p.K660* 0.28 TCGA-DD-AACT-01 12 57522542 57522542 G A LRP1 5'UTR 0.12 TCGA-DD-AACT-01 12 57589063 57589063 C T LRP1 Missense_Mutation p.T2773M 0.28 probably_damaging(0.959) TCGA-DD-AACT-01 12 57873560 57873560 A T ARHGAP9 5'UTR 0.32 TCGA-DD-AACT-01 13 20717035 20717035 C T GJA3 Silent p.S131S 0.34 TCGA-DD-AACT-01 13 23929324 23929324 C T SACS Missense_Mutation p.S476N 0.31 probably_damaging(0.989) TCGA-DD-AACT-01 13 33333788 33333788 A G PDS5B Missense_Mutation p.Y1111C 0.27 deleterious(0) probably_damaging(0.975) TCGA-DD-AACT-01 13 77672195 77672195 T A MYCBP2 Nonsense_Mutation p.R2994* 0.25 TCGA-DD-AACT-01 13 95248495 95248495 A T TGDS 5'UTR 0.20 TCGA-DD-AACT-01 14 102898383 102898383 C T TECPR2 Silent p.N445N 0.26 TCGA-DD-AACT-01 14 35873919 35873919 G A NFKBIA 5'UTR 0.40 TCGA-DD-AACT-01 14 45645056 45645056 A G FANCM Silent p.K1033K 0.31 TCGA-DD-AACT-01 14 74417192 74417192 G A COQ6 Missense_Mutation p.A53T 0.26 tolerated(0.1) possibly_damaging(0.743) TCGA-DD-AACT-01 14 75329266 75329266 A T PROX2 Intron 0.32 TCGA-DD-AACT-01 14 91340125 91340125 C A RPS6KA5 Missense_Mutation p.D671Y 0.25 deleterious(0) probably_damaging(0.992) TCGA-DD-AACT-01 14 95590842 95590842 T A DICER1 Missense_Mutation p.H356L 0.28 tolerated(0.11) possibly_damaging(0.844) TCGA-DD-AACT-01 15 24921184 24921184 G A NPAP1 Missense_Mutation p.R57H 0.29 tolerated(0.08) possibly_damaging(0.715) TCGA-DD-AACT-01 15 34646775 34646775 A T NUTM1 Missense_Mutation p.I374F 0.32 deleterious(0) probably_damaging(0.996) TCGA-DD-AACT-01 15 41804112 41804112 T A LTK Missense_Mutation p.E187V 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.802) TCGA-DD-AACT-01 15 44069147 44069147 A T ELL3 5'UTR 0.30 TCGA-DD-AACT-01 15 45426494 45426494 G A DUOX1 Silent p.L98L 0.35 TCGA-DD-AACT-01 15 45464471 45464471 T C SHF Missense_Mutation p.E280G 0.33 tolerated(0.12) probably_damaging(0.967) TCGA-DD-AACT-01 15 45464477 45464477 C G SHF Missense_Mutation p.G278A 0.31 tolerated(0.26) benign(0.114) TCGA-DD-AACT-01 15 63089561 63089561 T A TLN2 Missense_Mutation p.L2065Q 0.31 tolerated(0.34) benign(0.065) TCGA-DD-AACT-01 15 65113605 65113605 A T PIF1 Missense_Mutation p.V311E 0.23 deleterious(0) probably_damaging(1) TCGA-DD-AACT-01 15 74427842 74427842 T C ISLR2 3'UTR 0.28 TCGA-DD-AACT-01 15 75968374 75968374 A C CSPG4 Silent p.T2162T 0.31 TCGA-DD-AACT-01 15 89659582 89659582 C T ABHD2 Silent p.P8P 0.23 TCGA-DD-AACT-01 16 16356983 16356983 C T NOMO3 Missense_Mutation p.T483I 0.43 tolerated(0.21) benign(0.013) TCGA-DD-AACT-01 16 2235014 2235014 T A CASKIN1 Missense_Mutation p.Q421L 0.47 benign(0.222) TCGA-DD-AACT-01 16 24105573 24105573 T C PRKCB Missense_Mutation p.L259S 0.45 deleterious(0.02) benign(0.16) TCGA-DD-AACT-01 16 31336309 31336309 A T ITGAM Missense_Mutation p.N775Y 0.38 tolerated(0.08) benign(0.272) TCGA-DD-AACT-01 16 50746089 50746089 G T NOD2 Missense_Mutation p.R756L 0.21 deleterious(0) benign(0.246) TCGA-DD-AACT-01 16 51175130 51175130 T A SALL1 Missense_Mutation p.S335C 0.32 deleterious(0.01) possibly_damaging(0.599) TCGA-DD-AACT-01 16 56545111 56545111 A T BBS2 Missense_Mutation p.L144Q 0.47 deleterious(0) probably_damaging(0.986) TCGA-DD-AACT-01 16 57785926 57785926 T G KATNB1 Missense_Mutation p.F197L 0.44 deleterious(0) probably_damaging(0.997) TCGA-DD-AACT-01 16 66583527 66583527 C G TK2 Intron 0.23 TCGA-DD-AACT-01 16 85711658 85711658 A G GINS2 3'UTR 0.47 TCGA-DD-AACT-01 16 88643896 88643896 A T ZC3H18 Missense_Mutation p.E122V 0.25 deleterious_low_confidence(0) unknown(0) TCGA-DD-AACT-01 17 10314242 10314242 C A MYH8 Missense_Mutation p.C480F 0.27 deleterious(0) probably_damaging(0.963) TCGA-DD-AACT-01 17 1703349 1703349 C A SMYD4 Missense_Mutation p.V447F 0.31 deleterious(0) probably_damaging(0.931) TCGA-DD-AACT-01 17 34803368 34803368 C A TBC1D3G Missense_Mutation p.G151W 0.11 tolerated(0.14) benign(0.025) TCGA-DD-AACT-01 17 36485868 36485868 G A GPR179 Missense_Mutation p.A1195V 0.30 tolerated(0.16) benign(0.035) TCGA-DD-AACT-01 17 38183205 38183205 T A MED24 Missense_Mutation p.K538M 0.31 deleterious(0) probably_damaging(0.964) TCGA-DD-AACT-01 17 38557137 38557137 T A TOP2A Missense_Mutation p.R877W 0.16 deleterious(0) probably_damaging(0.928) TCGA-DD-AACT-01 17 40474482 40474482 T A STAT3 Missense_Mutation p.Y640F 0.27 tolerated(0.24) probably_damaging(0.999) TCGA-DD-AACT-01 17 42449562 42449562 T C ITGA2B 3'UTR 0.17 TCGA-DD-AACT-01 17 4544965 4544965 G T ALOX15 5'UTR 0.20 TCGA-DD-AACT-01 17 4804663 4804663 A T C17orf107 3'UTR 0.24 TCGA-DD-AACT-01 17 48276663 48276663 T A COL1A1 Missense_Mutation p.D132V 0.19 unknown(0) TCGA-DD-AACT-01 17 62290645 62290645 T A TEX2 Missense_Mutation p.E311D 0.18 tolerated(1) benign(0.011) TCGA-DD-AACT-01 17 62891092 62891092 C T LRRC37A3 Missense_Mutation p.E762K 0.04 deleterious(0.01) benign(0.093) TCGA-DD-AACT-01 17 62969442 62969442 G T AMZ2P1 RNA 0.36 TCGA-DD-AACT-01 17 66988376 66988376 A C ABCA9 Missense_Mutation p.I1219S 0.24 deleterious(0) possibly_damaging(0.598) TCGA-DD-AACT-01 17 71197661 71197661 C G COG1 Silent p.T565T 0.29 TCGA-DD-AACT-01 17 72913919 72913919 C A USH1G 3'UTR 0.29 TCGA-DD-AACT-01 17 76160372 76160372 A G C17orf99 Silent p.T189T 0.29 TCGA-DD-AACT-01 17 7681450 7681450 A T DNAH2 Missense_Mutation p.E1768V 0.22 probably_damaging(1) TCGA-DD-AACT-01 17 80202523 80202523 T A CSNK1D 3'UTR 0.29 TCGA-DD-AACT-01 18 14842894 14842894 A G ANKRD30B Splice_Site p.X908_splice 0.20 TCGA-DD-AACT-01 18 19751506 19751506 C G GATA6 Missense_Mutation p.A134G 0.27 deleterious_low_confidence(0.04) benign(0.026) TCGA-DD-AACT-01 18 3215130 3215130 C T MYOM1 Missense_Mutation p.R31Q 0.33 tolerated_low_confidence(1) benign(0) TCGA-DD-AACT-01 18 44400939 44400939 T C PIAS2 Silent p.P535P 0.26 TCGA-DD-AACT-01 18 7926575 7926575 C T PTPRM Missense_Mutation p.P186L 0.25 deleterious(0) probably_damaging(0.999) TCGA-DD-AACT-01 19 14047181 14047181 T C PODNL1 Silent p.E113E 0.31 TCGA-DD-AACT-01 19 17954263 17954263 G T JAK3 Missense_Mutation p.H116N 0.22 tolerated(0.13) benign(0.205) TCGA-DD-AACT-01 19 19656840 19656840 T A CILP2 3'UTR 0.45 TCGA-DD-AACT-01 19 3179175 3179175 C T S1PR4 Silent p.L129L 0.18 TCGA-DD-AACT-01 19 36351548 36351548 A C KIRREL2 Missense_Mutation p.S303R 0.44 deleterious(0) probably_damaging(0.968) TCGA-DD-AACT-01 19 38028877 38028877 G A ZNF793 3'UTR 0.30 TCGA-DD-AACT-01 19 41025770 41025770 A T SPTBN4 Silent p.L1122L 0.19 TCGA-DD-AACT-01 19 41808816 41808816 G A HNRNPUL1 Missense_Mutation p.R645Q 0.18 tolerated(0.1) unknown(0) TCGA-DD-AACT-01 19 44096203 44096203 A T IRGQ Missense_Mutation p.L616Q 0.20 deleterious(0) probably_damaging(0.998) TCGA-DD-AACT-01 19 48305829 48305829 C T TPRX1 Missense_Mutation p.G147S 0.16 tolerated(0.52) unknown(0) TCGA-DD-AACT-01 19 52394656 52394656 T G ZNF649 Missense_Mutation p.K245Q 0.40 tolerated(0.31) benign(0.005) TCGA-DD-AACT-01 19 5243988 5243988 G A PTPRS Silent p.T498T 0.30 TCGA-DD-AACT-01 19 5244417 5244417 G A PTPRS Silent p.G355G 0.41 TCGA-DD-AACT-01 19 52468991 52468991 A T ZNF350 Missense_Mutation p.C239S 0.42 deleterious(0) probably_damaging(0.997) TCGA-DD-AACT-01 19 53050791 53050791 T C ZNF808 Silent p.A30A 0.18 TCGA-DD-AACT-01 19 53762581 53762581 T A VN1R2 Missense_Mutation p.L318H 0.37 deleterious(0) probably_damaging(1) TCGA-DD-AACT-01 19 6677845 6677845 G T C3 3'UTR 0.11 TCGA-DD-AACT-01 19 9068492 9068492 A T MUC16 Silent p.T6318T 0.39 TCGA-DD-AACT-01 19 9204033 9204033 T A OR1M1 Missense_Mutation p.M38K 0.13 deleterious(0) benign(0.003) TCGA-DD-AACT-01 1 114372603 114372603 G C PTPN22 Missense_Mutation p.T701S 0.21 deleterious(0.01) probably_damaging(1) TCGA-DD-AACT-01 1 117122106 117122106 T A IGSF3 Missense_Mutation p.H1101L 0.27 tolerated(0.16) benign(0) TCGA-DD-AACT-01 1 1322755 1322755 T C CCNL2 Silent p.S473S 0.10 TCGA-DD-AACT-01 1 155989929 155989929 A C SSR2 Silent p.A10A 0.15 TCGA-DD-AACT-01 1 156384479 156384479 T A C1orf61 Missense_Mutation p.R46S 0.10 deleterious_low_confidence(0.01) benign(0.096) TCGA-DD-AACT-01 1 160011571 160011571 A G KCNJ10 Missense_Mutation p.L251P 0.13 tolerated(0.08) probably_damaging(0.996) TCGA-DD-AACT-01 1 161697120 161697120 A T FCRLB Nonsense_Mutation p.R317* 0.63 TCGA-DD-AACT-01 1 16383443 16383443 A T CLCNKB 3'UTR 0.29 TCGA-DD-AACT-01 1 170001030 170001030 G A KIFAP3 Nonsense_Mutation p.R280* 0.63 TCGA-DD-AACT-01 1 171236812 171236812 T A FMO1 Missense_Mutation p.L88Q 0.58 tolerated(0.27) probably_damaging(0.963) TCGA-DD-AACT-01 1 181767884 181767884 C T CACNA1E Missense_Mutation p.R2286W 0.21 tolerated(0.08) probably_damaging(0.919) TCGA-DD-AACT-01 1 186266079 186266079 T G PRG4 Silent p.S24S 0.53 TCGA-DD-AACT-01 1 197901381 197901382 - A LHX9 3'Flank 0.30 TCGA-DD-AACT-01 1 208212331 208212331 T A PLXNA2 Splice_Site p.X1501_splice 0.17 TCGA-DD-AACT-01 1 214538000 214538000 T C PTPN14 Missense_Mutation p.Q1097R 0.43 deleterious(0.03) benign(0.047) TCGA-DD-AACT-01 1 214814497 214814497 A T CENPF Missense_Mutation p.D939V 0.53 benign(0.387) TCGA-DD-AACT-01 1 214815369 214815370 GA - CENPF Frame_Shift_Del p.K1231Gfs*6 0.34 TCGA-DD-AACT-01 1 22469431 22469431 G A WNT4 5'UTR 0.36 TCGA-DD-AACT-01 1 229584906 229584906 A G NUP133 Missense_Mutation p.L1071P 0.48 deleterious(0.01) probably_damaging(0.995) TCGA-DD-AACT-01 1 236646811 236646811 T A EDARADD 3'Flank 0.24 TCGA-DD-AACT-01 1 31350007 31350007 C T SDC3 Missense_Mutation p.E88K 0.27 tolerated(0.06) probably_damaging(0.997) TCGA-DD-AACT-01 1 32163575 32163575 G A COL16A1 Nonsense_Mutation p.R197* 0.09 TCGA-DD-AACT-01 1 32222105 32222105 C A BAI2 Silent p.R111R 0.29 TCGA-DD-AACT-01 1 40431684 40431684 A G MFSD2A Missense_Mutation p.T251A 0.27 tolerated(0.37) possibly_damaging(0.491) TCGA-DD-AACT-01 1 4834600 4834600 G A AJAP1 3'UTR 0.24 TCGA-DD-AACT-01 1 63789072 63789072 G A FOXD3 Missense_Mutation p.A115T 0.07 tolerated(0.64) benign(0.012) TCGA-DD-AACT-01 1 6673929 6673929 T A PHF13 5'UTR 0.17 TCGA-DD-AACT-01 1 6673930 6673930 C A PHF13 5'UTR 0.16 TCGA-DD-AACT-01 1 6685353 6685353 G T THAP3 Splice_Site p.X25_splice 0.38 TCGA-DD-AACT-01 1 70625121 70625121 T A LRRC40 Missense_Mutation p.D371V 0.27 deleterious(0) possibly_damaging(0.739) TCGA-DD-AACT-01 20 1551730 1551730 T C SIRPB1 Missense_Mutation p.N269D 0.42 deleterious(0.02) possibly_damaging(0.845) TCGA-DD-AACT-01 20 34092199 34092199 T A CEP250 Missense_Mutation p.L2001Q 0.44 probably_damaging(1) TCGA-DD-AACT-01 20 36642114 36642114 T A TTI1 Silent p.T35T 0.47 TCGA-DD-AACT-01 20 43995718 43995718 A T SYS1 Missense_Mutation p.E145V 0.38 deleterious(0.04) possibly_damaging(0.833) TCGA-DD-AACT-01 20 44665420 44665420 A G SLC12A5 Missense_Mutation p.N179S 0.16 deleterious(0) probably_damaging(0.934) TCGA-DD-AACT-01 20 58441392 58441392 C A SYCP2 Nonsense_Mutation p.E1426* 0.21 TCGA-DD-AACT-01 20 58521648 58521648 A T FAM217B 3'UTR 0.43 TCGA-DD-AACT-01 20 62595237 62595237 T C ZNF512B Missense_Mutation p.I504V 0.24 deleterious(0.02) benign(0.066) TCGA-DD-AACT-01 20 62669655 62669655 A G ZNF512B Intron 0.43 TCGA-DD-AACT-01 21 10921957 10921957 A G TPTE Missense_Mutation p.S356P 0.11 deleterious(0.01) possibly_damaging(0.866) TCGA-DD-AACT-01 21 31802679 31802679 T A KRTAP13-4 Missense_Mutation p.L29Q 0.33 deleterious(0.01) probably_damaging(0.965) TCGA-DD-AACT-01 21 37537008 37537008 A G DOPEY2 Intron 0.27 TCGA-DD-AACT-01 21 42845270 42845270 G A TMPRSS2 Missense_Mutation p.A331V 0.33 deleterious(0) probably_damaging(0.953) TCGA-DD-AACT-01 21 47535813 47535813 G A COL6A2 Missense_Mutation p.G277R 0.25 deleterious(0) probably_damaging(0.995) TCGA-DD-AACT-01 22 24807640 24807640 A T SPECC1L Missense_Mutation p.I1058F 0.30 deleterious(0) probably_damaging(0.997) TCGA-DD-AACT-01 22 26083502 26083502 A C ADRBK2 Splice_Site p.X276_splice 0.27 TCGA-DD-AACT-01 22 42091053 42091053 G A C22orf46 3'UTR 0.26 TCGA-DD-AACT-01 2 106761696 106761696 T C UXS1 Missense_Mutation p.E141G 0.28 deleterious(0.01) probably_damaging(0.928) TCGA-DD-AACT-01 2 108453058 108453058 A C RGPD4 Missense_Mutation p.K25Q 0.32 tolerated(0.08) possibly_damaging(0.788) TCGA-DD-AACT-01 2 130897154 130897154 G T CCDC74B Silent p.R373R 0.26 TCGA-DD-AACT-01 2 166615986 166615986 C T GALNT3 Silent p.L311L 0.22 TCGA-DD-AACT-01 2 168811786 168811786 T A STK39 3'UTR 0.50 TCGA-DD-AACT-01 2 179610419 179610419 T A TTN Intron 0.28 TCGA-DD-AACT-01 2 181927827 181927827 A T UBE2E3 3'UTR 0.41 TCGA-DD-AACT-01 2 185801445 185801445 C G ZNF804A Nonsense_Mutation p.S441* 0.27 TCGA-DD-AACT-01 2 190611232 190611232 T C ANKAR Missense_Mutation p.I1395T 0.03 tolerated_low_confidence(0.44) benign(0.002) TCGA-DD-AACT-01 2 190647358 190647358 T C ORMDL1 5'UTR 0.24 TCGA-DD-AACT-01 2 1920989 1920989 C T MYT1L Missense_Mutation p.V534I 0.22 tolerated(0.5) probably_damaging(0.961) TCGA-DD-AACT-01 2 210683819 210683819 T C UNC80 Missense_Mutation p.L599P 0.21 probably_damaging(0.994) TCGA-DD-AACT-01 2 220424039 220424039 C T OBSL1 Missense_Mutation p.R1045H 0.13 tolerated(0.06) probably_damaging(0.973) TCGA-DD-AACT-01 2 225244553 225244553 T A FAM124B Missense_Mutation p.I369F 0.34 deleterious(0) benign(0.295) TCGA-DD-AACT-01 2 228855727 228855727 T C SPHKAP Missense_Mutation p.R1650G 0.28 deleterious(0) possibly_damaging(0.553) TCGA-DD-AACT-01 2 239079292 239079292 C G ILKAP Missense_Mutation p.G355A 0.27 tolerated(0.12) benign(0.049) TCGA-DD-AACT-01 2 43939487 43939487 G A PLEKHH2 Missense_Mutation p.E809K 0.19 tolerated(0.06) benign(0.017) TCGA-DD-AACT-01 2 44559599 44559599 T G PREPL Missense_Mutation p.K451T 0.33 deleterious(0.01) benign(0.258) TCGA-DD-AACT-01 2 48915582 48915582 G T LHCGR Missense_Mutation p.L452I 0.28 deleterious(0) probably_damaging(1) TCGA-DD-AACT-01 2 73680950 73680950 A T ALMS1 Missense_Mutation p.L2431F 0.26 benign(0.112) TCGA-DD-AACT-01 2 88887518 88887518 T C EIF2AK3 Missense_Mutation p.I471V 0.23 tolerated(1) benign(0.005) TCGA-DD-AACT-01 2 90153982 90153982 G T IGKV3D-15 Silent p.V23V 0.38 TCGA-DD-AACT-01 3 113379342 113379342 T - KIAA2018 Frame_Shift_Del p.N396Mfs*19 0.22 TCGA-DD-AACT-01 3 118906777 118906777 A G UPK1B Silent p.L75L 0.30 TCGA-DD-AACT-01 3 124207122 124207122 A G KALRN Silent p.P1450P 0.22 TCGA-DD-AACT-01 3 126137512 126137512 A T CCDC37 Missense_Mutation p.E182V 0.29 deleterious(0) probably_damaging(0.992) TCGA-DD-AACT-01 3 128205213 128205213 T A GATA2 Splice_Site p.X77_splice 0.40 TCGA-DD-AACT-01 3 138724450 138724450 G A PRR23A Missense_Mutation p.R221C 0.25 deleterious(0) possibly_damaging(0.761) TCGA-DD-AACT-01 3 157154712 157154712 T A PTX3 5'UTR 0.27 TCGA-DD-AACT-01 3 161221371 161221371 C A OTOL1 Missense_Mutation p.P359T 0.26 deleterious(0) probably_damaging(0.999) TCGA-DD-AACT-01 3 178916869 178916869 A T PIK3CA Missense_Mutation p.T86S 0.26 tolerated(0.28) benign(0.054) TCGA-DD-AACT-01 3 195452788 195452788 G T MUC20 Silent p.G438G 0.18 TCGA-DD-AACT-01 3 32544113 32544113 T A CMTM6 Missense_Mutation p.K42M 0.34 deleterious(0) probably_damaging(0.975) TCGA-DD-AACT-01 3 38157966 38157966 C T DLEC1 Silent p.T1293T 0.29 TCGA-DD-AACT-01 3 41977412 41977412 T G ULK4 Missense_Mutation p.I87L 0.29 tolerated(0.18) benign(0.252) TCGA-DD-AACT-01 3 44938212 44938212 T A TGM4 Missense_Mutation p.N187K 0.23 tolerated(0.31) benign(0.022) TCGA-DD-AACT-01 3 48336594 48336595 GT - NME6 Frame_Shift_Del p.T130* 0.24 TCGA-DD-AACT-01 3 48731511 48731511 C T IP6K2 Intron 0.31 TCGA-DD-AACT-01 3 50137458 50137458 A C RBM5 Missense_Mutation p.D128A 0.31 deleterious(0) probably_damaging(0.996) TCGA-DD-AACT-01 3 50143082 50143082 A G RBM5 Missense_Mutation p.I265M 0.26 deleterious(0.02) probably_damaging(0.986) TCGA-DD-AACT-01 3 57882301 57882301 G C SLMAP Missense_Mutation p.S441T 0.30 tolerated(0.08) probably_damaging(0.998) TCGA-DD-AACT-01 3 62358217 62358217 G A FEZF2 Silent p.G109G 0.06 TCGA-DD-AACT-01 3 78649366 78649366 C - ROBO1 Frame_Shift_Del p.G1613Efs*10 0.21 TCGA-DD-AACT-01 3 96945199 96945199 T G EPHA6 Silent p.S402S 0.22 TCGA-DD-AACT-01 3 97806627 97806627 T C OR5AC2 Missense_Mutation p.F204S 0.26 deleterious(0.02) benign(0.314) TCGA-DD-AACT-01 4 101386642 101386642 A G EMCN Missense_Mutation p.V105A 0.31 tolerated(1) benign(0.005) TCGA-DD-AACT-01 4 140640793 140640793 A T MAML3 Missense_Mutation p.L1034H 0.20 probably_damaging(0.999) TCGA-DD-AACT-01 4 141294779 141294779 G A SCOC Missense_Mutation p.R30Q 0.21 tolerated_low_confidence(0.11) possibly_damaging(0.449) TCGA-DD-AACT-01 4 141321579 141321579 T C CLGN Missense_Mutation p.H209R 0.29 deleterious(0.02) probably_damaging(0.994) TCGA-DD-AACT-01 4 154125610 154125610 A C TRIM2 5'Flank 0.21 TCGA-DD-AACT-01 4 15529075 15529075 A - CC2D2A Frame_Shift_Del p.K386Nfs*9 0.12 TCGA-DD-AACT-01 4 169138047 169138047 T C DDX60 3'UTR 0.30 TCGA-DD-AACT-01 4 175162348 175162348 T A FBXO8 Nonsense_Mutation p.K160* 0.30 TCGA-DD-AACT-01 4 4247987 4247987 C A TMEM128 Missense_Mutation p.V37F 0.23 deleterious(0.01) benign(0.391) TCGA-DD-AACT-01 4 55143655 55143655 A G PDGFRA Silent p.L629L 0.26 TCGA-DD-AACT-01 4 6027974 6027974 G A JAKMIP1 Missense_Mutation p.A826V 0.27 deleterious_low_confidence(0.03) probably_damaging(0.986) TCGA-DD-AACT-01 4 84516038 84516038 G T AGPAT9 Missense_Mutation p.R260I 0.28 deleterious(0) probably_damaging(0.97) TCGA-DD-AACT-01 4 9557838 9557838 T A MIR548I2 RNA 0.39 TCGA-DD-AACT-01 5 102432254 102432254 T A GIN1 Missense_Mutation p.S429C 0.28 deleterious_low_confidence(0.02) benign(0.353) TCGA-DD-AACT-01 5 115336354 115336354 T C AQPEP Missense_Mutation p.M549T 0.26 deleterious(0.02) probably_damaging(0.917) TCGA-DD-AACT-01 5 140589674 140589674 A G PCDHB12 Missense_Mutation p.N399D 0.24 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-DD-AACT-01 5 145512586 145512586 T A LARS Missense_Mutation p.E757D 0.30 tolerated(0.19) benign(0.038) TCGA-DD-AACT-01 5 16463667 16463667 G A ZNF622 Silent p.H270H 0.28 TCGA-DD-AACT-01 5 167833201 167833201 A T WWC1 Splice_Site p.X197_splice 0.36 TCGA-DD-AACT-01 5 167986088 167986088 T G PANK3 Silent p.A337A 0.26 TCGA-DD-AACT-01 5 178541174 178541174 A T ADAMTS2 Silent p.P1110P 0.18 TCGA-DD-AACT-01 5 1879844 1879844 G A IRX4 Silent p.P170P 0.06 TCGA-DD-AACT-01 5 36249633 36249633 T A RANBP3L 3'UTR 0.18 TCGA-DD-AACT-01 5 43702725 43702725 A G NNT Missense_Mutation p.T1000A 0.15 tolerated(0.06) probably_damaging(0.998) TCGA-DD-AACT-01 5 58285596 58285596 T A PDE4D Missense_Mutation p.T480S 0.31 tolerated_low_confidence(0.19) probably_damaging(0.961) TCGA-DD-AACT-01 5 89943496 89943496 A G GPR98 Silent p.R1068R 0.30 TCGA-DD-AACT-01 6 118015334 118015334 A T NUS1 Missense_Mutation p.S228C 0.42 deleterious(0.04) possibly_damaging(0.823) TCGA-DD-AACT-01 6 134492215 134492215 C A SGK1 Silent p.L423L 0.28 TCGA-DD-AACT-01 6 147122997 147122997 T C ADGB Silent p.D1556D 0.42 TCGA-DD-AACT-01 6 149959640 149959640 T A KATNA1 Missense_Mutation p.E15V 0.39 deleterious(0) probably_damaging(0.997) TCGA-DD-AACT-01 6 159139125 159139125 C - SYTL3 Frame_Shift_Del p.K202Nfs*6 0.18 TCGA-DD-AACT-01 6 160103452 160103452 T C SOD2 3'UTR 0.16 TCGA-DD-AACT-01 6 28194827 28194827 A C ZSCAN9 5'UTR 0.36 TCGA-DD-AACT-01 6 31515391 31515391 C T NFKBIL1 5'UTR 0.43 TCGA-DD-AACT-01 6 31940408 31940408 C T STK19 Silent p.R147R 0.19 TCGA-DD-AACT-01 6 32782304 32782304 T A HLA-DOB Missense_Mutation p.T146S 0.17 tolerated(0.24) benign(0.138) TCGA-DD-AACT-01 6 34725313 34725313 A T SNRPC 5'UTR 0.41 TCGA-DD-AACT-01 6 37411922 37411922 T A CMTR1 Missense_Mutation p.L94H 0.29 deleterious(0) probably_damaging(0.975) TCGA-DD-AACT-01 6 4068880 4068880 G T FAM217A 3'UTR 0.35 TCGA-DD-AACT-01 6 43250465 43250465 G A TTBK1 Missense_Mutation p.V663M 0.28 possibly_damaging(0.698) TCGA-DD-AACT-01 6 44269182 44269182 T C AARS2 Missense_Mutation p.E873G 0.07 tolerated(0.19) benign(0.169) TCGA-DD-AACT-01 6 51613247 51613247 T A PKHD1 Missense_Mutation p.Q3056L 0.31 deleterious(0.02) benign(0.104) TCGA-DD-AACT-01 7 100490380 100490380 G A ACHE Silent p.G376G 0.34 TCGA-DD-AACT-01 7 143057167 143057167 A T FAM131B Missense_Mutation p.L35Q 0.50 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-DD-AACT-01 7 150671846 150671846 A G KCNH2 Missense_Mutation p.L87P 0.41 deleterious(0.01) probably_damaging(0.935) TCGA-DD-AACT-01 7 158823365 158823365 T A VIPR2 Missense_Mutation p.Q420L 0.41 deleterious(0.02) benign(0.205) TCGA-DD-AACT-01 7 28858926 28858926 G C CREB5 3'UTR 0.27 TCGA-DD-AACT-01 7 43916187 43916187 C T URGCP 3'UTR 0.13 TCGA-DD-AACT-01 7 44119332 44119332 C G POLM Silent p.L160L 0.53 TCGA-DD-AACT-01 7 77236577 77236577 A G PTPN12 Missense_Mutation p.I241V 0.22 deleterious(0.04) benign(0.045) TCGA-DD-AACT-01 7 94252667 94252667 T A SGCE Missense_Mutation p.N145Y 0.24 tolerated(0.3) probably_damaging(0.99) TCGA-DD-AACT-01 8 107751706 107751706 A T OXR1 Silent p.I687I 0.18 TCGA-DD-AACT-01 8 124383232 124383232 T A ATAD2 Splice_Site p.X214_splice 0.51 TCGA-DD-AACT-01 8 124693474 124693480 CTTGGCT - ANXA13 Missense_Mutation 0.13 TCGA-DD-AACT-01 8 132052660 132052660 T A ADCY8 5'UTR 0.47 TCGA-DD-AACT-01 8 144512455 144512455 A T MAFA Missense_Mutation p.F41Y 0.18 tolerated(1) unknown(0) TCGA-DD-AACT-01 8 145623168 145623168 C T CPSF1 Splice_Site p.X691_splice 0.17 TCGA-DD-AACT-01 8 27320996 27320996 A T CHRNA2 Missense_Mutation p.S322T 0.20 deleterious(0) probably_damaging(0.999) TCGA-DD-AACT-01 8 27348688 27348688 A T EPHX2 5'UTR 0.18 TCGA-DD-AACT-01 8 37700132 37700132 G T GPR124 3'UTR 0.29 TCGA-DD-AACT-01 8 38271457 38271457 G A FGFR1 Silent p.I788I 0.36 TCGA-DD-AACT-01 8 53084488 53084488 A C ST18 Silent p.A311A 0.39 TCGA-DD-AACT-01 8 68087491 68087491 C G CSPP1 Intron 0.21 TCGA-DD-AACT-01 8 6874290 6874290 T A DEFA3 Missense_Mutation p.E28V 0.11 deleterious(0) probably_damaging(0.987) TCGA-DD-AACT-01 9 102607053 102607053 T A NR4A3 Silent p.T470T 0.22 TCGA-DD-AACT-01 9 138646978 138646978 T C KCNT1 Missense_Mutation p.L168P 0.28 deleterious(0) benign(0.196) TCGA-DD-AACT-01 9 15744565 15744565 A T CCDC171 Nonsense_Mutation p.K782* 0.30 TCGA-DD-AACT-01 9 2115820 2115820 A T SMARCA2 Splice_Site p.X1153_splice 0.33 TCGA-DD-AACT-01 9 8527349 8527349 A G PTPRD Silent p.S182S 0.05 TCGA-DD-AACT-01 9 85615446 85615446 C A RASEF Missense_Mutation p.D493Y 0.29 deleterious(0.02) benign(0.153) TCGA-DD-AACT-01 X 101139286 101139286 T A ZMAT1 Silent p.S371S 0.35 TCGA-DD-AACT-01 X 107408117 107408117 T A COL4A6 Silent p.L1321L 0.04 TCGA-DD-AACT-01 X 107867495 107867495 T A COL4A5 Missense_Mutation p.Y983N 0.31 unknown(0) TCGA-DD-AACT-01 X 114142179 114142179 T A HTR2C 3'UTR 0.39 TCGA-DD-AACT-01 X 129289157 129289157 T C AIFM1 Intron 0.05 TCGA-DD-AACT-01 X 153191699 153191699 C A ARHGAP4 5'UTR 0.10 TCGA-DD-AACT-01 X 38182690 38182690 T C RPGR Missense_Mutation p.H39R 0.44 benign(0.024) TCGA-DD-AACT-01 X 48826085 48826085 C T KCND1 Silent p.V198V 0.37 TCGA-DD-AACT-01 X 49114003 49114003 T A FOXP3 Missense_Mutation p.H112L 0.04 tolerated_low_confidence(0.14) benign(0.005) TCGA-DD-AACT-01 X 62926291 62926291 G A ARHGEF9 Silent p.P76P 0.36 TCGA-DD-AACT-01 X 69269752 69269752 T A AWAT2 Missense_Mutation p.T11S 0.36 tolerated(0.5) benign(0.058) TCGA-DD-AACU-01 10 101455831 101455831 G C ENTPD7 Missense_Mutation p.R321P 0.49 deleterious(0) probably_damaging(0.998) TCGA-DD-AACU-01 10 104597106 104597106 C G CYP17A1 Missense_Mutation p.V5L 0.29 tolerated(1) benign(0.003) TCGA-DD-AACU-01 10 125798100 125798100 G A CHST15 Missense_Mutation p.T374M 0.28 deleterious(0.03) benign(0.217) TCGA-DD-AACU-01 10 135012081 135012081 G A KNDC1 Splice_Site p.X690_splice 0.56 TCGA-DD-AACU-01 10 135012082 135012082 G T KNDC1 Missense_Mutation p.R690S 0.55 deleterious(0.01) benign(0.007) TCGA-DD-AACU-01 10 61833947 61833947 T A ANK3 Missense_Mutation p.N2231I 0.18 benign(0.004) TCGA-DD-AACU-01 10 64968996 64968996 C A JMJD1C Splice_Site p.X899_splice 0.48 TCGA-DD-AACU-01 10 79552043 79552043 T A DLG5 3'UTR 0.43 TCGA-DD-AACU-01 10 81316920 81316920 T G SFTPA2 3'UTR 0.16 TCGA-DD-AACU-01 10 81316946 81316946 C G SFTPA2 3'UTR 0.21 TCGA-DD-AACU-01 10 90431671 90431671 T C LIPF Silent p.Y216Y 0.52 TCGA-DD-AACU-01 11 102487623 102487623 A T MMP20 Silent p.P98P 0.39 TCGA-DD-AACU-01 11 103091404 103091404 T C DYNC2H1 Missense_Mutation p.L3000P 0.04 probably_damaging(0.999) TCGA-DD-AACU-01 11 105881275 105881275 C T MSANTD4 Missense_Mutation p.D124N 0.07 tolerated(0.1) possibly_damaging(0.563) TCGA-DD-AACU-01 11 129722516 129722516 A G TMEM45B Missense_Mutation p.I47V 0.39 tolerated(0.37) benign(0.002) TCGA-DD-AACU-01 11 17633835 17633835 C A OTOG Silent p.R2096R 0.32 TCGA-DD-AACU-01 11 30938526 30938526 G A DCDC1 Missense_Mutation p.P1115S 0.09 tolerated(0.16) benign(0) TCGA-DD-AACU-01 11 3380312 3380312 C G ZNF195 3'UTR 0.30 TCGA-DD-AACU-01 11 5878659 5878659 A T OR52E8 Missense_Mutation p.W92R 0.34 deleterious(0) probably_damaging(0.999) TCGA-DD-AACU-01 11 59423093 59423093 C T PATL1 Missense_Mutation p.A312T 0.37 tolerated(0.27) benign(0.068) TCGA-DD-AACU-01 11 59939503 59939504 - T MS4A6A 3'Flank 0.50 TCGA-DD-AACU-01 11 62288775 62288782 TTGGACCC - AHNAK Frame_Shift_Del p.G4370Vfs*17 0.10 TCGA-DD-AACU-01 11 63071682 63071682 T C SLC22A10 Missense_Mutation p.V463A 0.27 tolerated(0.06) benign(0.057) TCGA-DD-AACU-01 11 65784577 65784577 C T CATSPER1 Missense_Mutation p.R757H 0.33 deleterious(0) probably_damaging(0.911) TCGA-DD-AACU-01 11 66139205 66139205 A T SLC29A2 5'UTR 0.57 TCGA-DD-AACU-01 11 7618805 7618805 A G PPFIBP2 Silent p.T129T 0.43 TCGA-DD-AACU-01 11 92616054 92616054 G T FAT3 Missense_Mutation p.Q4144H 0.26 possibly_damaging(0.526) TCGA-DD-AACU-01 11 93796813 93796813 G A HEPHL1 Silent p.V185V 0.06 TCGA-DD-AACU-01 11 95825334 95825334 G C MAML2 Missense_Mutation p.Q621E 0.07 unknown(0) TCGA-DD-AACU-01 12 105289099 105289099 G C SLC41A2 Missense_Mutation p.P230A 0.05 tolerated(0.15) probably_damaging(0.942) TCGA-DD-AACU-01 12 130847644 130847644 T C PIWIL1 Missense_Mutation p.V717A 0.04 deleterious(0.04) possibly_damaging(0.876) TCGA-DD-AACU-01 12 54422431 54422431 G T HOXC6 Silent p.A42A 0.35 TCGA-DD-AACU-01 12 65471574 65471574 G T WIF1 Missense_Mutation p.P117T 0.38 deleterious(0) probably_damaging(1) TCGA-DD-AACU-01 12 70986218 70986218 G T PTPRB Missense_Mutation p.L542M 0.35 deleterious(0) probably_damaging(0.971) TCGA-DD-AACU-01 12 7261740 7261740 T A C1RL Nonsense_Mutation p.R13* 0.32 TCGA-DD-AACU-01 12 7479610 7479610 G T ACSM4 Missense_Mutation p.K525N 0.26 tolerated(0.42) benign(0.015) TCGA-DD-AACU-01 13 23909599 23909599 T C SACS Missense_Mutation p.M2806V 0.54 benign(0.018) TCGA-DD-AACU-01 13 72440467 72440467 A G DACH1 Silent p.S147S 0.11 TCGA-DD-AACU-01 14 106322304 106322304 G C IGHM Missense_Mutation p.T7S 0.36 tolerated(0.91) benign(0.001) TCGA-DD-AACU-01 14 20404228 20404228 A T OR4K1 Missense_Mutation p.I135F 0.38 deleterious(0) probably_damaging(0.917) TCGA-DD-AACU-01 14 23866815 23866815 A T MYH6 Missense_Mutation p.S633R 0.42 tolerated(0.38) benign(0.003) TCGA-DD-AACU-01 14 45650891 45650891 A - FANCM Frame_Shift_Del p.R1457Dfs*4 0.16 TCGA-DD-AACU-01 14 51192620 51192620 G C NIN Missense_Mutation p.N2081K 0.04 tolerated_low_confidence(0.16) benign(0.005) TCGA-DD-AACU-01 14 55529487 55529487 C A MAPK1IP1L Missense_Mutation p.A57E 0.05 deleterious_low_confidence(0.04) probably_damaging(0.932) TCGA-DD-AACU-01 14 59112146 59112146 T C DACT1 Missense_Mutation p.Y269H 0.16 deleterious(0) probably_damaging(0.999) TCGA-DD-AACU-01 15 24924458 24924458 G T NPAP1 Missense_Mutation p.R1148S 0.31 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-DD-AACU-01 15 24926218 24926218 C G NPAP1 3'UTR 0.17 TCGA-DD-AACU-01 15 25959142 25959142 C G ATP10A Missense_Mutation p.D675H 0.34 tolerated(0.06) benign(0.021) TCGA-DD-AACU-01 15 43873588 43873588 T A PPIP5K1 Splice_Site p.X260_splice 0.18 TCGA-DD-AACU-01 15 44783063 44783063 A T CTDSPL2 Missense_Mutation p.E186V 0.37 deleterious(0) possibly_damaging(0.776) TCGA-DD-AACU-01 15 74637456 74637456 C T CYP11A1 Missense_Mutation p.R185H 0.22 deleterious(0) benign(0.185) TCGA-DD-AACU-01 15 90321633 90321633 A G MESP2 3'UTR 0.05 TCGA-DD-AACU-01 15 90977012 90977012 G C IQGAP1 Missense_Mutation p.C151S 0.31 deleterious(0) probably_damaging(0.986) TCGA-DD-AACU-01 15 95001427 95001427 T C MCTP2 Missense_Mutation p.V771A 0.24 deleterious(0) probably_damaging(0.997) TCGA-DD-AACU-01 16 20497911 20497911 A C ACSM2A Missense_Mutation p.N549H 0.66 deleterious(0.03) possibly_damaging(0.476) TCGA-DD-AACU-01 16 2812955 2812955 G T SRRM2 Missense_Mutation p.R809I 0.07 unknown(0) TCGA-DD-AACU-01 16 28925798 28925798 C A RABEP2 Missense_Mutation p.G218V 0.70 deleterious(0) possibly_damaging(0.605) TCGA-DD-AACU-01 16 4937194 4937194 T A PPL Missense_Mutation p.Y850F 0.54 tolerated(0.12) benign(0.071) TCGA-DD-AACU-01 16 49660081 49660081 C A ZNF423 Nonsense_Mutation p.E1193* 0.66 TCGA-DD-AACU-01 16 82032540 82032540 C G SDR42E1 3'UTR 0.67 TCGA-DD-AACU-01 16 88500501 88500501 A T ZNF469 Missense_Mutation p.E2180V 0.68 benign(0.004) TCGA-DD-AACU-01 17 38519621 38519621 G A CTD-2267D19.3 Missense_Mutation p.G145S 0.38 tolerated_low_confidence(0.35) unknown(0) TCGA-DD-AACU-01 17 7140034 7140034 G A PHF23 Missense_Mutation p.A71V 0.14 tolerated(0.26) possibly_damaging(0.779) TCGA-DD-AACU-01 17 7577545 7577545 T C TP53 Missense_Mutation p.M246V 0.59 deleterious(0) probably_damaging(0.947) TCGA-DD-AACU-01 18 2762109 2762109 G A SMCHD1 Missense_Mutation p.V1481I 0.42 tolerated(0.56) benign(0.001) TCGA-DD-AACU-01 19 12186502 12186502 A T ZNF844 Silent p.I189I 0.10 TCGA-DD-AACU-01 19 1440464 1440464 G A RPS15 3'UTR 0.44 TCGA-DD-AACU-01 19 38979817 38979817 G T RYR1 Missense_Mutation p.V1850L 0.63 benign(0.044) TCGA-DD-AACU-01 19 38995537 38995537 T A RYR1 Silent p.P2739P 0.68 TCGA-DD-AACU-01 19 39009927 39009927 G A RYR1 Silent p.R3364R 0.72 TCGA-DD-AACU-01 19 6013025 6013025 G T RFX2 Silent p.R291R 0.78 TCGA-DD-AACU-01 19 7795018 7795018 A T CLEC4G Missense_Mutation p.F172I 0.06 deleterious(0) probably_damaging(0.92) TCGA-DD-AACU-01 1 100681590 100681590 C T DBT Missense_Mutation p.V241I 0.59 tolerated(0.43) benign(0.001) TCGA-DD-AACU-01 1 12979853 12979853 A T PRAMEF7 Missense_Mutation p.T349S 0.28 probably_damaging(0.997) TCGA-DD-AACU-01 1 152733603 152733603 A T KPRP Silent p.L513L 0.30 TCGA-DD-AACU-01 1 158911830 158911830 A T PYHIN1 Missense_Mutation p.I215L 0.35 tolerated(0.85) benign(0) TCGA-DD-AACU-01 1 181705462 181705462 G T CACNA1E Missense_Mutation p.R1105I 0.35 tolerated(0.07) benign(0) TCGA-DD-AACU-01 1 205811830 205811830 T A PM20D1 Missense_Mutation p.T293S 0.29 tolerated(0.73) benign(0.017) TCGA-DD-AACU-01 1 22163367 22163367 C T HSPG2 Missense_Mutation p.G3428D 0.37 benign(0.012) TCGA-DD-AACU-01 1 248790047 248790047 C G OR2T11 Missense_Mutation p.R128T 0.38 deleterious(0) probably_damaging(0.994) TCGA-DD-AACU-01 1 39341854 39341854 C A GJA9 5'UTR 0.15 TCGA-DD-AACU-01 1 67885696 67885696 T C SERBP1 Missense_Mutation p.E331G 0.52 deleterious(0.01) benign(0.068) TCGA-DD-AACU-01 1 67885701 67885701 C G SERBP1 Missense_Mutation p.K329N 0.53 deleterious(0) probably_damaging(0.987) TCGA-DD-AACU-01 1 78041825 78041825 T A ZZZ3 Silent p.P753P 0.11 TCGA-DD-AACU-01 1 8585826 8585826 G A RERE Intron 0.39 TCGA-DD-AACU-01 1 8585827 8585827 C T RERE Intron 0.39 TCGA-DD-AACU-01 20 10393861 10393861 T C MKKS Missense_Mutation p.N101S 0.39 tolerated(1) benign(0.023) TCGA-DD-AACU-01 20 33578100 33578100 C T MYH7B Missense_Mutation p.S697F 0.17 probably_damaging(1) TCGA-DD-AACU-01 20 50406736 50406736 G C SALL4 Missense_Mutation p.D762E 0.27 tolerated(0.17) benign(0.061) TCGA-DD-AACU-01 22 16256679 16256679 T C POTEH Splice_Site 0.22 TCGA-DD-AACU-01 22 32464553 32464553 T A SLC5A1 Missense_Mutation p.L148Q 0.36 deleterious(0) probably_damaging(0.997) TCGA-DD-AACU-01 22 41856386 41856386 A C PHF5A 3'UTR 0.37 TCGA-DD-AACU-01 22 42540443 42540443 G A RP4-669P10.16 5'Flank 0.53 TCGA-DD-AACU-01 2 107459494 107459494 T A ST6GAL2 Missense_Mutation p.I314L 0.26 benign(0.181) TCGA-DD-AACU-01 2 113082111 113082111 T C ZC3H6 Missense_Mutation p.Y575H 0.30 tolerated(0.55) benign(0.002) TCGA-DD-AACU-01 2 11798694 11798694 G A NTSR2 Missense_Mutation p.P382S 0.22 tolerated(0.08) benign(0.002) TCGA-DD-AACU-01 2 11798695 11798695 G T NTSR2 Missense_Mutation p.H381Q 0.22 tolerated(0.29) benign(0.165) TCGA-DD-AACU-01 2 130738924 130738924 C T RAB6C 3'UTR 0.51 TCGA-DD-AACU-01 2 196636524 196636524 C T DNAH7 Missense_Mutation p.D3765N 0.29 tolerated(0.17) benign(0.327) TCGA-DD-AACU-01 2 196912120 196912120 A T DNAH7 Missense_Mutation p.H118Q 0.31 tolerated(0.52) benign(0.002) TCGA-DD-AACU-01 2 207652666 207652666 A T FASTKD2 Missense_Mutation p.M534L 0.42 tolerated(1) benign(0.005) TCGA-DD-AACU-01 2 220370997 220370997 A T GMPPA Missense_Mutation p.S339C 0.24 deleterious(0.04) benign(0.086) TCGA-DD-AACU-01 2 220500393 220500393 A T SLC4A3 Splice_Site p.X685_splice 0.33 TCGA-DD-AACU-01 2 233346334 233346334 T A ECEL1 Missense_Mutation p.Q624L 0.27 deleterious(0) benign(0.239) TCGA-DD-AACU-01 2 50463932 50463932 G T NRXN1 Missense_Mutation p.H1221N 0.50 deleterious(0.01) benign(0.064) TCGA-DD-AACU-01 2 64112930 64112930 G A UGP2 Silent p.L261L 0.16 TCGA-DD-AACU-01 2 73053049 73053049 G T EXOC6B 5'UTR 0.08 TCGA-DD-AACU-01 2 74742763 74742763 C T TLX2 Missense_Mutation p.A135V 0.17 deleterious(0.04) possibly_damaging(0.787) TCGA-DD-AACU-01 2 80816462 80816462 G A CTNNA2 Missense_Mutation p.A681T 0.24 tolerated(0.5) possibly_damaging(0.535) TCGA-DD-AACU-01 2 89326668 89326668 A T IGKV3-11 Silent p.P115P 0.21 TCGA-DD-AACU-01 2 96072725 96072725 G A FAHD2A Silent p.S94S 0.43 TCGA-DD-AACU-01 3 111831700 111831700 T A C3orf52 Intron 0.35 TCGA-DD-AACU-01 3 12857490 12857490 T C CAND2 Missense_Mutation p.M475T 0.06 tolerated(0.09) benign(0.334) TCGA-DD-AACU-01 3 128621398 128621398 G C ACAD9 Silent p.V295V 0.28 TCGA-DD-AACU-01 3 13401865 13401865 T A NUP210 Missense_Mutation p.T687S 0.37 tolerated(0.59) benign(0.005) TCGA-DD-AACU-01 3 184101425 184101425 C T CHRD Missense_Mutation p.H479Y 0.39 tolerated(1) benign(0.006) TCGA-DD-AACU-01 3 28476731 28476731 T A ZCWPW2 Missense_Mutation p.F155I 0.37 deleterious(0.04) possibly_damaging(0.632) TCGA-DD-AACU-01 3 37033938 37033938 T C EPM2AIP1 Missense_Mutation p.I211V 0.41 tolerated(0.74) benign(0.008) TCGA-DD-AACU-01 3 89259319 89259319 A T EPHA3 Missense_Mutation p.M155L 0.08 tolerated(0.42) benign(0.035) TCGA-DD-AACU-01 4 129960350 129960350 T A SCLT1 Intron 0.60 TCGA-DD-AACU-01 4 13544068 13544068 C A NKX3-2 Missense_Mutation p.G184V 0.62 tolerated(0.06) benign(0.274) TCGA-DD-AACU-01 4 178881973 178881973 C G LINC01098 5'UTR 0.52 TCGA-DD-AACU-01 4 178881990 178881990 G C LINC01098 5'UTR 0.58 TCGA-DD-AACU-01 4 3131687 3131687 C T HTT Nonsense_Mutation p.Q594* 0.51 TCGA-DD-AACU-01 4 46126026 46126026 G A GABRG1 5'UTR 0.52 TCGA-DD-AACU-01 4 6302514 6302514 T A WFS1 Missense_Mutation p.F331Y 0.08 deleterious(0) benign(0.148) TCGA-DD-AACU-01 4 76871659 76871659 A G SDAD1 3'UTR 0.67 TCGA-DD-AACU-01 5 134871575 134871575 T A NEUROG1 5'UTR 0.34 TCGA-DD-AACU-01 5 140536696 140536696 C A PCDHB17 Missense_Mutation p.P374T 0.36 tolerated_low_confidence(0.15) possibly_damaging(0.672) TCGA-DD-AACU-01 5 140594106 140594106 A G PCDHB13 Silent p.K137K 0.34 TCGA-DD-AACU-01 5 140712001 140712001 C A PCDHGA1 Missense_Mutation p.P584T 0.30 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-DD-AACU-01 5 141335502 141335502 G A PCDH12 Missense_Mutation p.R639C 0.37 tolerated(0.08) possibly_damaging(0.806) TCGA-DD-AACU-01 5 149216515 149216515 G A PPARGC1B Missense_Mutation p.D833N 0.15 tolerated(0.2) possibly_damaging(0.587) TCGA-DD-AACU-01 5 169230174 169230174 C T DOCK2 Silent p.L889L 0.36 TCGA-DD-AACU-01 5 176314451 176314451 C T HK3 Splice_Site p.X534_splice 0.36 TCGA-DD-AACU-01 5 82554532 82554532 A T XRCC4 Intron 0.39 TCGA-DD-AACU-01 5 93294536 93294536 T A FAM172A Silent p.I171I 0.37 TCGA-DD-AACU-01 6 117150058 117150058 C T GPRC6A Missense_Mutation p.G40D 0.22 deleterious(0) probably_damaging(0.997) TCGA-DD-AACU-01 6 117593743 117593743 G A VGLL2 3'UTR 0.62 TCGA-DD-AACU-01 6 24666984 24666984 G A TDP2 Missense_Mutation p.A36V 0.44 deleterious(0.01) benign(0.164) TCGA-DD-AACU-01 6 33261535 33261535 C A RGL2 Intron 0.36 TCGA-DD-AACU-01 6 405053 405053 C A IRF4 Missense_Mutation p.P379T 0.26 deleterious(0) probably_damaging(0.989) TCGA-DD-AACU-01 6 54214615 54214615 C T TINAG Missense_Mutation p.A334V 0.42 deleterious(0.01) probably_damaging(0.969) TCGA-DD-AACU-01 6 70733546 70733546 G T COL19A1 Missense_Mutation p.A352S 0.27 deleterious(0.04) unknown(0) TCGA-DD-AACU-01 6 97533088 97533088 C G KLHL32 Missense_Mutation p.F166L 0.09 deleterious(0) possibly_damaging(0.575) TCGA-DD-AACU-01 7 148700809 148700809 C T PDIA4 3'UTR 0.42 TCGA-DD-AACU-01 7 33134956 33134956 T A RP9 Nonsense_Mutation p.K186* 0.36 TCGA-DD-AACU-01 7 39612442 39612442 T G YAE1D1 3'UTR 0.24 TCGA-DD-AACU-01 7 48315128 48315128 C T ABCA13 Silent p.I1955I 0.14 TCGA-DD-AACU-01 7 53104494 53104494 T G POM121L12 3'UTR 0.11 TCGA-DD-AACU-01 7 82582848 82582848 G T PCLO Missense_Mutation p.P2474H 0.35 unknown(0) TCGA-DD-AACU-01 7 82764321 82764321 C T PCLO Missense_Mutation p.V849I 0.37 unknown(0) TCGA-DD-AACU-01 8 113812467 113812467 G T CSMD3 Missense_Mutation p.S632R 0.39 deleterious(0.01) probably_damaging(0.995) TCGA-DD-AACU-01 8 15397737 15397737 T C TUSC3 5'Flank 0.82 TCGA-DD-AACU-01 8 28385158 28385158 A G FZD3 Missense_Mutation p.Y294C 0.64 deleterious(0) probably_damaging(0.999) TCGA-DD-AACU-01 8 33361343 33361343 G A TTI2 Silent p.I346I 0.05 TCGA-DD-AACU-01 8 37978484 37978484 C T ASH2L Missense_Mutation p.H328Y 0.22 tolerated(0.13) possibly_damaging(0.742) TCGA-DD-AACU-01 8 38913107 38913107 A T ADAM9 Silent p.G469G 0.53 TCGA-DD-AACU-01 8 39114704 39114704 A T ADAM32 Splice_Site p.X669_splice 0.62 TCGA-DD-AACU-01 8 77766536 77766536 G T ZFHX4 Missense_Mutation p.G2460V 0.06 benign(0.014) TCGA-DD-AACU-01 9 112190926 112190926 A C PTPN3 Missense_Mutation p.F268C 0.72 deleterious(0) probably_damaging(1) TCGA-DD-AACU-01 9 115248898 115248898 G A C9orf147 Intron 0.63 TCGA-DD-AACU-01 9 125273731 125273731 A T OR1J2 Silent p.S217S 0.68 TCGA-DD-AACU-01 X 108926763 108926763 T G ACSL4 5'UTR 0.78 TCGA-DD-AACU-01 X 118222963 118222963 T A KIAA1210 Missense_Mutation p.S744C 0.13 tolerated(0.08) benign(0.112) TCGA-DD-AACU-01 X 144904522 144904522 A G SLITRK2 Silent p.L193L 0.25 TCGA-DD-AACU-01 X 32535970 32535970 T A DMD Intron 0.78 TCGA-DD-AACU-01 X 45051186 45051186 T A CXorf36 Missense_Mutation p.D103V 0.82 deleterious(0) probably_damaging(0.977) TCGA-DD-AACU-01 X 72094770 72094770 A T DMRTC1 Missense_Mutation p.L49Q 0.26 deleterious(0) benign(0.164) TCGA-DD-AACU-01 X 73962219 73962219 C A KIAA2022 Nonsense_Mutation p.E725* 0.10 TCGA-DD-AACU-01 X 75004522 75004522 G A MAGEE2 Missense_Mutation p.S122L 0.10 deleterious(0.02) probably_damaging(0.991) TCGA-DD-AACV-01 10 115612648 115612648 T C DCLRE1A Silent p.P98P 0.93 TCGA-DD-AACV-01 10 134942314 134942314 C T GPR123 Missense_Mutation p.H328Y 0.93 tolerated(0.93) benign(0.222) TCGA-DD-AACV-01 10 18242319 18242319 G C SLC39A12 Silent p.G38G 0.48 TCGA-DD-AACV-01 11 1096352 1096352 A G MUC2 Missense_Mutation p.H2126R 0.43 unknown(0) TCGA-DD-AACV-01 11 124756386 124756386 G A ROBO4 Missense_Mutation p.P923L 0.90 deleterious(0.04) possibly_damaging(0.713) TCGA-DD-AACV-01 11 2181222 2181222 G T INS Missense_Mutation p.Q65K 0.58 tolerated(0.9) benign(0.026) TCGA-DD-AACV-01 11 28090820 28090820 C T KIF18A Missense_Mutation p.G526S 0.07 tolerated(0.09) probably_damaging(1) TCGA-DD-AACV-01 11 56230823 56230823 G A OR5M9 Nonsense_Mutation p.Q19* 0.88 TCGA-DD-AACV-01 12 21757510 21757510 G C GYS2 Missense_Mutation p.S6C 0.44 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DD-AACV-01 12 40689286 40689286 C T LRRK2 Missense_Mutation p.S979F 0.50 tolerated(0.72) benign(0.004) TCGA-DD-AACV-01 12 40697826 40697826 A T LRRK2 Missense_Mutation p.R1223W 0.45 deleterious(0) probably_damaging(0.999) TCGA-DD-AACV-01 12 51080430 51080430 A C DIP2B Missense_Mutation p.I506L 0.45 tolerated(0.45) benign(0.01) TCGA-DD-AACV-01 12 56811967 56811967 C A TIMELESS Missense_Mutation p.R1135S 0.48 tolerated_low_confidence(0.34) benign(0.122) TCGA-DD-AACV-01 12 8051356 8051356 C A NANOGP1 RNA 0.54 TCGA-DD-AACV-01 12 80712338 80712338 G T OTOGL Missense_Mutation p.G1207V 0.50 deleterious(0.01) probably_damaging(1) TCGA-DD-AACV-01 13 100634416 100634416 C T ZIC2 Missense_Mutation p.A33V 0.58 deleterious_low_confidence(0.01) benign(0.239) TCGA-DD-AACV-01 13 24411689 24411689 A T MIPEP Splice_Site p.X515_splice 0.50 TCGA-DD-AACV-01 13 25744258 25744258 G T AMER2 Silent p.P500P 0.44 TCGA-DD-AACV-01 13 36049067 36049067 A G MAB21L1 3'UTR 0.46 TCGA-DD-AACV-01 13 42390845 42390846 - T VWA8 Frame_Shift_Ins p.Q646Tfs*29 0.32 TCGA-DD-AACV-01 13 61985638 61985638 A G PCDH20 Missense_Mutation p.I865T 0.92 tolerated(0.12) benign(0.092) TCGA-DD-AACV-01 13 77661633 77661633 C T MYCBP2 Missense_Mutation p.E3583K 0.12 possibly_damaging(0.881) TCGA-DD-AACV-01 14 102548068 102548068 C T HSP90AA1 Missense_Mutation p.R849H 0.44 tolerated_low_confidence(0.08) unknown(0) TCGA-DD-AACV-01 14 23346816 23346816 C A LRP10 3'UTR 0.31 TCGA-DD-AACV-01 14 36155747 36155747 C A RALGAPA1 Splice_Site p.X853_splice 0.92 TCGA-DD-AACV-01 14 36155768 36155768 G C RALGAPA1 Missense_Mutation p.L847V 0.93 tolerated(0.14) possibly_damaging(0.793) TCGA-DD-AACV-01 14 50623681 50623681 G A SOS2 Intron 0.11 TCGA-DD-AACV-01 14 77493105 77493105 A G IRF2BPL Missense_Mutation p.L344S 0.37 deleterious(0.03) unknown(0) TCGA-DD-AACV-01 14 94004493 94004493 C T UNC79 Silent p.T250T 0.48 TCGA-DD-AACV-01 14 96775858 96775858 A G ATG2B Missense_Mutation p.L1412P 0.41 tolerated(0.05) probably_damaging(0.997) TCGA-DD-AACV-01 15 22473224 22473224 C A IGHV4OR15-8 Missense_Mutation p.W16L 0.23 tolerated(0.06) benign(0.009) TCGA-DD-AACV-01 15 31234997 31234997 T C FAN1 3'UTR 0.52 TCGA-DD-AACV-01 15 32455506 32455506 C T CHRNA7 Silent p.H349H 0.49 TCGA-DD-AACV-01 15 45707864 45707864 C G SPATA5L1 Missense_Mutation p.A575G 0.46 tolerated(0.37) benign(0.001) TCGA-DD-AACV-01 15 55838901 55838901 G T PYGO1 Missense_Mutation p.Q194K 0.44 deleterious(0.03) benign(0.237) TCGA-DD-AACV-01 15 78566662 78566662 G T DNAJA4 Missense_Mutation p.C210F 0.30 deleterious(0.02) possibly_damaging(0.742) TCGA-DD-AACV-01 15 80189340 80189340 A T MTHFS 5'UTR 0.43 TCGA-DD-AACV-01 15 86077259 86077259 A G AKAP13 Intron 0.47 TCGA-DD-AACV-01 16 20451162 20451162 C G ACSM5 Missense_Mutation p.S526C 0.29 deleterious(0.01) benign(0.064) TCGA-DD-AACV-01 16 3017804 3017804 T C KREMEN2 Intron 0.07 TCGA-DD-AACV-01 16 30913422 30913422 C A CTF1 Missense_Mutation p.F56L 0.37 deleterious(0) probably_damaging(0.943) TCGA-DD-AACV-01 16 597393 597393 G A CAPN15 Silent p.P185P 0.48 TCGA-DD-AACV-01 16 597394 597394 G T CAPN15 Nonsense_Mutation p.E186* 0.48 TCGA-DD-AACV-01 16 67995510 67995510 T C SLC12A4 Missense_Mutation p.S106G 0.96 tolerated(0.09) benign(0.209) TCGA-DD-AACV-01 16 78420833 78420833 A T WWOX Missense_Mutation p.K198M 0.92 deleterious(0.03) benign(0.405) TCGA-DD-AACV-01 17 10408279 10408279 C A MYH1 Missense_Mutation p.A847S 0.95 deleterious(0.01) probably_damaging(0.998) TCGA-DD-AACV-01 17 26089884 26089884 G A NOS2 Missense_Mutation p.R914W 0.07 deleterious(0.04) benign(0.004) TCGA-DD-AACV-01 17 34958498 34958498 G T MRM1 Nonsense_Mutation p.E87* 0.58 TCGA-DD-AACV-01 17 55752442 55752442 T C MSI2 Silent p.S300S 0.37 TCGA-DD-AACV-01 17 57290544 57290544 G A SMG8 Missense_Mutation p.G787D 0.52 deleterious(0) probably_damaging(0.994) TCGA-DD-AACV-01 17 73487458 73487458 C A KIAA0195 Missense_Mutation p.S436R 0.42 deleterious(0) probably_damaging(0.999) TCGA-DD-AACV-01 17 7578500 7578500 G A TP53 Nonsense_Mutation p.Q144* 0.92 TCGA-DD-AACV-01 17 79937073 79937073 C T ASPSCR1 Missense_Mutation p.T39M 0.05 deleterious(0.01) unknown(0) TCGA-DD-AACV-01 18 46287893 46287893 A G CTIF Missense_Mutation p.N404D 0.91 tolerated(0.1) benign(0.002) TCGA-DD-AACV-01 18 61562581 61562581 G A SERPINB2 Silent p.Q84Q 0.93 TCGA-DD-AACV-01 19 16212299 16212299 T C TPM4 3'UTR 0.51 TCGA-DD-AACV-01 19 23543926 23543926 T C ZNF91 Missense_Mutation p.R619G 0.46 tolerated(0.3) possibly_damaging(0.524) TCGA-DD-AACV-01 19 37904229 37904229 C T ZNF569 Missense_Mutation p.G444E 0.95 deleterious(0.03) probably_damaging(1) TCGA-DD-AACV-01 19 40580707 40580707 G A ZNF780A Nonsense_Mutation p.R549* 0.81 TCGA-DD-AACV-01 19 40928590 40928590 G C SERTAD1 3'UTR 0.12 TCGA-DD-AACV-01 19 44031347 44031347 C T ETHE1 5'UTR 0.91 TCGA-DD-AACV-01 19 50169057 50169057 T C IRF3 5'UTR 1.00 TCGA-DD-AACV-01 1 1018039 1018039 C A C1orf159 3'UTR 0.29 TCGA-DD-AACV-01 1 107937924 107937924 A G NTNG1 Missense_Mutation p.I346V 0.43 tolerated(0.09) benign(0.011) TCGA-DD-AACV-01 1 120839624 120839624 G A FAM72B 5'UTR 0.05 TCGA-DD-AACV-01 1 12368658 12368658 C T VPS13D Missense_Mutation p.P2204S 0.49 benign(0.219) TCGA-DD-AACV-01 1 150471453 150471453 G A TARS2 Silent p.L494L 0.47 TCGA-DD-AACV-01 1 154422417 154422417 A G IL6R Missense_Mutation p.I343V 0.48 tolerated(0.49) benign(0.003) TCGA-DD-AACV-01 1 158576368 158576368 T C OR10Z1 Missense_Mutation p.I47T 0.40 tolerated(1) benign(0.002) TCGA-DD-AACV-01 1 163044190 163044190 A G RGS4 Missense_Mutation p.Q250R 0.52 deleterious(0) probably_damaging(0.989) TCGA-DD-AACV-01 1 167064149 167064149 C A DUSP27 Missense_Mutation p.N21K 0.47 tolerated(0.09) benign(0.024) TCGA-DD-AACV-01 1 222801064 222801064 A T MIA3 Missense_Mutation p.N168Y 0.48 deleterious(0.01) benign(0.059) TCGA-DD-AACV-01 1 225533932 225533932 A G DNAH14 Silent p.Q2753Q 0.48 TCGA-DD-AACV-01 1 229441099 229441099 A G RAB4A 3'UTR 0.45 TCGA-DD-AACV-01 1 27434282 27434282 T C SLC9A1 Missense_Mutation p.K380R 0.51 tolerated(0.14) benign(0.346) TCGA-DD-AACV-01 1 41228577 41228577 G T NFYC Missense_Mutation p.M193I 0.50 tolerated(0.32) possibly_damaging(0.795) TCGA-DD-AACV-01 20 1551722 1551722 G A SIRPB1 Silent p.T271T 0.31 TCGA-DD-AACV-01 20 31814800 31814800 G C BPIFA3 Splice_Site p.X229_splice 0.26 TCGA-DD-AACV-01 20 47273593 47273593 G C PREX1 Missense_Mutation p.A703G 0.17 tolerated(0.07) benign(0.015) TCGA-DD-AACV-01 20 4865396 4865396 T C SLC23A2 Intron 0.31 TCGA-DD-AACV-01 20 60907730 60907730 T C LAMA5 Missense_Mutation p.Y1109C 0.33 probably_damaging(0.995) TCGA-DD-AACV-01 21 38098595 38098595 T C SIM2 Missense_Mutation p.L240P 0.35 deleterious(0) probably_damaging(0.984) TCGA-DD-AACV-01 21 43299446 43299446 G A PRDM15 Missense_Mutation p.A12V 0.37 deleterious_low_confidence(0) possibly_damaging(0.499) TCGA-DD-AACV-01 22 39917506 39917506 C T ATF4 Missense_Mutation p.P19L 0.53 tolerated(0.07) probably_damaging(0.999) TCGA-DD-AACV-01 2 179644675 179644675 A T TTN Intron 0.56 TCGA-DD-AACV-01 2 17998293 17998293 T C MSGN1 Missense_Mutation p.Y170H 0.49 deleterious(0) probably_damaging(0.992) TCGA-DD-AACV-01 2 191067984 191067985 CA - C2orf88 3'UTR 0.35 TCGA-DD-AACV-01 2 207041479 207041479 C T GPR1 Missense_Mutation p.A165T 0.48 deleterious(0) probably_damaging(0.994) TCGA-DD-AACV-01 2 220043283 220043283 C T FAM134A Missense_Mutation p.A70V 0.47 tolerated(0.55) probably_damaging(0.996) TCGA-DD-AACV-01 2 220326770 220326770 C A SPEG Silent p.P869P 0.53 TCGA-DD-AACV-01 2 27353725 27353725 A G PREB 3'UTR 0.29 TCGA-DD-AACV-01 2 44586867 44586867 C A PREPL 5'UTR 0.46 TCGA-DD-AACV-01 2 68384452 68384452 C T WDR92 Missense_Mutation p.G42S 0.49 tolerated(0.18) benign(0.063) TCGA-DD-AACV-01 2 70142443 70142460 GCTCCGGCCCCCGGTGCA - MXD1 5'UTR 0.33 TCGA-DD-AACV-01 3 108698449 108698449 C T MORC1 Missense_Mutation p.S797N 0.43 tolerated(0.35) benign(0.004) TCGA-DD-AACV-01 3 112647737 112647737 T A CD200R1 Missense_Mutation p.H232L 0.54 tolerated(0.5) benign(0.034) TCGA-DD-AACV-01 3 119176876 119176878 AAG - TMEM39A In_Frame_Del p.S108del 0.40 TCGA-DD-AACV-01 3 120998775 120998775 T A STXBP5L Silent p.S694S 0.50 TCGA-DD-AACV-01 3 130686043 130686043 G T ATP2C1 Missense_Mutation p.V427F 0.49 tolerated(0.06) benign(0.36) TCGA-DD-AACV-01 3 133307028 133307028 A G CDV3 3'UTR 0.38 TCGA-DD-AACV-01 3 136060292 136060292 C G STAG1 Missense_Mutation p.R1183T 0.48 deleterious_low_confidence(0.02) benign(0.009) TCGA-DD-AACV-01 3 141161744 141161744 G A ZBTB38 Missense_Mutation p.E172K 0.51 deleterious(0) probably_damaging(0.996) TCGA-DD-AACV-01 3 148459155 148459155 C G AGTR1 Missense_Mutation p.N111K 0.44 deleterious(0) probably_damaging(1) TCGA-DD-AACV-01 3 148905856 148905856 T C CP Missense_Mutation p.E616G 0.45 deleterious(0) possibly_damaging(0.784) TCGA-DD-AACV-01 3 151171320 151171320 G A IGSF10 Silent p.F189F 0.40 TCGA-DD-AACV-01 3 183907511 183907511 A G ABCF3 Missense_Mutation p.Y427C 0.66 deleterious(0) probably_damaging(0.998) TCGA-DD-AACV-01 3 51505011 51505011 A T VPRBP Missense_Mutation p.L41M 0.48 deleterious(0.01) possibly_damaging(0.671) TCGA-DD-AACV-01 3 62467427 62467427 C T CADPS Silent p.P1048P 0.38 TCGA-DD-AACV-01 3 98001914 98001945 CATCCCCATGTACTTTTTTCTTGGGAGTTTAG - OR5H2 Frame_Shift_Del p.I62Lfs*3 0.38 TCGA-DD-AACV-01 4 11400565 11400565 T C HS3ST1 3'UTR 0.38 TCGA-DD-AACV-01 4 188925129 188925129 T C ZFP42 3'UTR 0.92 TCGA-DD-AACV-01 4 5837703 5837703 G T CRMP1 Missense_Mutation p.A521D 0.47 deleterious(0) probably_damaging(0.952) TCGA-DD-AACV-01 4 952396 952420 TGGTTTTATTTTCATTGTGAAATAT ATAC TMEM175 3'UTR 0.42 TCGA-DD-AACV-01 4 952420 952420 T C TMEM175 3'UTR 0.43 TCGA-DD-AACV-01 4 95539284 95539284 G A PDLIM5 Silent p.K379K 0.94 TCGA-DD-AACV-01 5 132032297 132032297 T C KIF3A 3'UTR 0.45 TCGA-DD-AACV-01 5 151784567 151784567 G C NMUR2 Silent p.L36L 0.53 TCGA-DD-AACV-01 5 26988368 26988368 G A CDH9 Nonsense_Mutation p.Q25* 0.22 TCGA-DD-AACV-01 5 43298839 43298839 T - HMGCS1 Frame_Shift_Del p.M77Wfs*28 0.40 TCGA-DD-AACV-01 6 102503262 102503262 A C GRIK2 Missense_Mutation p.K790T 0.37 tolerated(0.16) possibly_damaging(0.7) TCGA-DD-AACV-01 6 102503268 102503268 A G GRIK2 Missense_Mutation p.H792R 0.37 deleterious(0.01) possibly_damaging(0.864) TCGA-DD-AACV-01 6 143759816 143759816 C T ADAT2 Missense_Mutation p.E38K 0.39 tolerated(0.26) benign(0.011) TCGA-DD-AACV-01 6 147694876 147694876 G A STXBP5 Missense_Mutation p.G1031S 0.37 tolerated(0.06) possibly_damaging(0.654) TCGA-DD-AACV-01 6 29079833 29079833 T G OR2J3 Missense_Mutation p.S56A 0.53 tolerated(0.26) benign(0.015) TCGA-DD-AACV-01 6 41652806 41652806 A G TFEB Missense_Mutation p.M321T 0.52 deleterious(0) possibly_damaging(0.785) TCGA-DD-AACV-01 7 104749510 104749510 A C KMT2E Missense_Mutation p.D1197A 0.46 deleterious_low_confidence(0.01) benign(0.066) TCGA-DD-AACV-01 7 104751284 104751284 A G KMT2E Missense_Mutation p.N1346S 0.45 deleterious_low_confidence(0.03) benign(0.013) TCGA-DD-AACV-01 7 14733789 14733789 A G DGKB Missense_Mutation p.Y208H 0.49 deleterious(0.04) probably_damaging(0.95) TCGA-DD-AACV-01 7 151573596 151573596 A C PRKAG2 Missense_Mutation p.I37S 0.32 tolerated_low_confidence(0.19) benign(0.118) TCGA-DD-AACV-01 7 157208880 157208880 G T DNAJB6 3'UTR 0.57 TCGA-DD-AACV-01 7 71130456 71130456 C T WBSCR17 Missense_Mutation p.R381W 0.43 deleterious(0) probably_damaging(0.985) TCGA-DD-AACV-01 7 82584355 82584355 T C PCLO Missense_Mutation p.S1972G 0.48 unknown(0) TCGA-DD-AACV-01 8 107371767 107371767 T A OXR1 5'UTR 0.36 TCGA-DD-AACV-01 8 131896918 131896918 A C ADCY8 Missense_Mutation p.I667M 0.54 deleterious(0) probably_damaging(0.973) TCGA-DD-AACV-01 8 145133637 145133637 G A EXOSC4 Silent p.A2A 0.52 TCGA-DD-AACV-01 8 21995989 21995989 T C REEP4 3'UTR 0.48 TCGA-DD-AACV-01 8 24346811 24346811 G T ADAM7 Missense_Mutation p.D411Y 0.50 deleterious(0) probably_damaging(0.995) TCGA-DD-AACV-01 8 26149087 26149087 G A PPP2R2A 5'Flank 0.50 TCGA-DD-AACV-01 8 29996075 29996075 T C MBOAT4 Missense_Mutation p.Y106C 0.41 deleterious(0.01) probably_damaging(0.984) TCGA-DD-AACV-01 8 33360999 33360999 T C TTI2 Missense_Mutation p.R403G 0.40 deleterious(0) probably_damaging(0.999) TCGA-DD-AACV-01 8 92033484 92033484 C T TMEM55A Silent p.T85T 0.37 TCGA-DD-AACV-01 8 95531278 95531278 A G KIAA1429 Silent p.F816F 0.47 TCGA-DD-AACV-01 9 104500017 104500017 T C GRIN3A Missense_Mutation p.E82G 0.44 tolerated_low_confidence(0.43) benign(0) TCGA-DD-AACV-01 9 123716025 123716025 T C C5 Silent p.K1628K 0.43 TCGA-DD-AACV-01 9 133355124 133355124 A G ASS1 Missense_Mutation p.N237S 0.58 tolerated(0.24) benign(0.013) TCGA-DD-AACV-01 9 140077677 140077677 T A ANAPC2 Missense_Mutation p.I396F 0.43 deleterious(0) probably_damaging(0.996) TCGA-DD-AACV-01 9 141014753 141014753 G A CACNA1B Missense_Mutation p.C2056Y 0.55 tolerated(1) probably_damaging(0.998) TCGA-DD-AACV-01 9 34397707 34397707 C T C9orf24 5'UTR 0.39 TCGA-DD-AACV-01 9 35560184 35560184 C T RUSC2 Nonsense_Mutation p.Q1183* 0.07 TCGA-DD-AACV-01 X 100169286 100169286 T C XKRX 3'UTR 1.00 TCGA-DD-AACV-01 X 102337929 102337929 T C NXF3 Intron 1.00 TCGA-DD-AACV-01 X 12938752 12938752 T C TLR8 Silent p.H531H 0.09 TCGA-DD-AACV-01 X 1506264 1506264 A G SLC25A6 Missense_Mutation p.I216T 0.04 deleterious(0.02) benign(0.325) TCGA-DD-AACV-01 X 153135853 153135853 C T L1CAM Missense_Mutation p.A266T 0.13 tolerated(0.1) probably_damaging(0.969) TCGA-DD-AACV-01 X 18602433 18602433 G A CDKL5 Missense_Mutation p.V172I 0.96 deleterious_low_confidence(0) possibly_damaging(0.751) TCGA-DD-AACV-01 X 9864618 9864618 G T SHROOM2 Missense_Mutation p.R890S 0.91 deleterious(0) possibly_damaging(0.788) TCGA-DD-AACW-01 10 116735225 116735225 A G TRUB1 3'UTR 0.45 TCGA-DD-AACW-01 10 127451995 127451995 G T EDRF1 Missense_Mutation p.G1224V 0.45 tolerated(0.2) benign(0.334) TCGA-DD-AACW-01 10 13708163 13708190 CATTTTCAATCTCCTGCAGTTTCTTCAG T FRMD4A In_Frame_Del p.L504_A513delinsT 0.35 TCGA-DD-AACW-01 10 79397504 79397504 C T KCNMA1 5'Flank 0.55 TCGA-DD-AACW-01 11 110007241 110007241 T G ZC3H12C Intron 0.31 TCGA-DD-AACW-01 11 45882443 45882443 G T CRY2 Missense_Mutation p.R192L 0.43 deleterious(0.02) possibly_damaging(0.811) TCGA-DD-AACW-01 11 66563768 66563768 G A C11orf80 Missense_Mutation p.R217K 0.41 tolerated(0.09) possibly_damaging(0.567) TCGA-DD-AACW-01 11 88781136 88781136 G A GRM5 5'UTR 0.46 TCGA-DD-AACW-01 11 94823356 94823356 G T ENDOD1 Missense_Mutation p.G89C 0.35 deleterious(0.05) possibly_damaging(0.851) TCGA-DD-AACW-01 12 125299539 125299539 T G SCARB1 Missense_Mutation p.M136L 0.42 tolerated(0.51) benign(0.001) TCGA-DD-AACW-01 13 103382043 103382043 C T CCDC168 Missense_Mutation p.D2373N 0.46 tolerated(0.5) unknown(0) TCGA-DD-AACW-01 14 100995511 100995511 G A WDR25 Missense_Mutation p.R460Q 0.40 tolerated(0.06) possibly_damaging(0.899) TCGA-DD-AACW-01 14 31642418 31642418 A G HECTD1 Missense_Mutation p.I367T 0.37 deleterious(0) probably_damaging(0.994) TCGA-DD-AACW-01 14 51352570 51352570 G A ABHD12B Missense_Mutation p.G207S 0.40 deleterious(0.01) probably_damaging(0.917) TCGA-DD-AACW-01 15 22960851 22960851 T A CYFIP1 Missense_Mutation p.F682I 0.37 deleterious(0) possibly_damaging(0.687) TCGA-DD-AACW-01 16 16244619 16244619 T C ABCC6 Missense_Mutation p.K1407E 0.81 deleterious(0) possibly_damaging(0.672) TCGA-DD-AACW-01 16 347780 347780 G A AXIN1 Nonsense_Mutation p.R576* 0.71 TCGA-DD-AACW-01 17 33520277 33520277 T A SLC35G3 3'UTR 0.38 TCGA-DD-AACW-01 17 37566444 37566444 C T MED1 Missense_Mutation p.R677H 0.46 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-DD-AACW-01 17 61972737 61972737 C T CSH1 Intron 0.42 TCGA-DD-AACW-01 17 78327346 78327346 G A RNF213 Silent p.E3486E 0.40 TCGA-DD-AACW-01 19 12494404 12494404 T C CTD-3105H18.14 Missense_Mutation p.Q34R 0.41 tolerated_low_confidence(0.76) benign(0.009) TCGA-DD-AACW-01 19 39668341 39668341 G T PAK4 Missense_Mutation p.M504I 0.33 deleterious(0) benign(0.199) TCGA-DD-AACW-01 19 44535978 44535978 A T ZNF222 Missense_Mutation p.I91F 0.29 tolerated(0.7) possibly_damaging(0.847) TCGA-DD-AACW-01 19 44739013 44739014 - T ZNF227 Frame_Shift_Ins p.Q145Sfs*4 0.21 TCGA-DD-AACW-01 19 47768197 47768197 G A CCDC9 Silent p.E238E 0.28 TCGA-DD-AACW-01 19 55743523 55743525 TCC - PPP6R1 In_Frame_Del p.E682del 0.09 TCGA-DD-AACW-01 1 171765961 171765961 A T METTL13 3'UTR 0.23 TCGA-DD-AACW-01 1 182025619 182025619 G A ZNF648 Silent p.C509C 0.59 TCGA-DD-AACW-01 1 223990152 223990152 G T TP53BP2 Intron 0.19 TCGA-DD-AACW-01 1 41215315 41215315 G C NFYC Missense_Mutation p.R83P 0.69 deleterious(0) possibly_damaging(0.902) TCGA-DD-AACW-01 1 6631122 6631122 G A TAS1R1 Silent p.T115T 0.72 TCGA-DD-AACW-01 1 92642924 92642924 C G KIAA1107 Missense_Mutation p.P287R 0.03 tolerated(0.07) benign(0.022) TCGA-DD-AACW-01 20 20340921 20340921 A G C20orf26 Missense_Mutation p.E1194G 0.39 tolerated(0.05) benign(0.048) TCGA-DD-AACW-01 20 35443555 35443555 C T SOGA1 Missense_Mutation p.A764T 0.48 tolerated(0.55) benign(0.008) TCGA-DD-AACW-01 21 32492952 32492952 T C TIAM1 Missense_Mutation p.I1504V 0.43 deleterious(0) probably_damaging(0.995) TCGA-DD-AACW-01 22 22160239 22160239 T C MAPK1 Missense_Mutation p.Y131C 0.40 deleterious(0) probably_damaging(1) TCGA-DD-AACW-01 22 43464505 43464505 C T TTLL1 Silent p.K138K 0.30 TCGA-DD-AACW-01 2 179647562 179647562 A G TTN Missense_Mutation p.V1024A 0.39 TCGA-DD-AACW-01 2 230655847 230655847 T C TRIP12 Silent p.L1437L 0.42 TCGA-DD-AACW-01 2 69623341 69623341 A C NFU1 3'UTR 0.42 TCGA-DD-AACW-01 2 86362000 86362000 A C PTCD3 Missense_Mutation p.K556N 0.40 deleterious(0) possibly_damaging(0.891) TCGA-DD-AACW-01 2 96789809 96789809 G A ASTL Missense_Mutation p.S359L 0.43 tolerated_low_confidence(0.18) benign(0.004) TCGA-DD-AACW-01 3 130284086 130284086 G T COL6A6 Missense_Mutation p.G304W 0.37 deleterious(0) probably_damaging(0.999) TCGA-DD-AACW-01 3 168269684 168269684 C A MIR551B RNA 0.28 TCGA-DD-AACW-01 3 173996654 173996654 T - NLGN1 Frame_Shift_Del p.Q290Nfs*4 0.20 TCGA-DD-AACW-01 3 179047483 179047483 A T ZNF639 Nonsense_Mutation p.R46* 0.28 TCGA-DD-AACW-01 3 186570987 186570987 C T ADIPOQ Missense_Mutation p.P47L 0.29 deleterious(0) probably_damaging(1) TCGA-DD-AACW-01 3 32022658 32022658 A G OSBPL10 Missense_Mutation p.V5A 0.26 tolerated_low_confidence(0.44) unknown(0) TCGA-DD-AACW-01 3 48630101 48630101 C A COL7A1 Missense_Mutation p.R293L 0.56 unknown(0) TCGA-DD-AACW-01 4 11401607 11401607 G A HS3ST1 Missense_Mutation p.A8V 0.44 tolerated(1) unknown(0) TCGA-DD-AACW-01 4 48581248 48581248 A T FRYL Missense_Mutation p.L757H 0.46 deleterious(0.01) probably_damaging(0.987) TCGA-DD-AACW-01 5 130778197 130778197 T G RAPGEF6 Missense_Mutation p.K1160T 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.57) TCGA-DD-AACW-01 5 160047635 160047644 CTGGCCAGGT - ATP10B Frame_Shift_Del p.D709Gfs*27 0.46 TCGA-DD-AACW-01 5 52096333 52096333 G T PELO Silent p.V35V 0.06 TCGA-DD-AACW-01 5 67590433 67590433 C T PIK3R1 Nonsense_Mutation p.Q499* 0.39 TCGA-DD-AACW-01 5 86708358 86708358 T C CCNH Intron 0.38 TCGA-DD-AACW-01 6 144095324 144095324 C T PHACTR2 Nonsense_Mutation p.R521* 0.81 TCGA-DD-AACW-01 6 160966486 160966486 T C LPA Missense_Mutation p.D1795G 0.80 tolerated(0.06) benign(0.228) TCGA-DD-AACW-01 7 107706863 107706863 C A LAMB4 Missense_Mutation p.G877W 0.44 deleterious(0) probably_damaging(1) TCGA-DD-AACW-01 7 21934600 21934600 T G DNAH11 Silent p.T4351T 0.43 TCGA-DD-AACW-01 7 54610242 54610242 G T VSTM2A 5'UTR 0.65 TCGA-DD-AACW-01 7 77408705 77408705 T A RSBN1L 3'UTR 0.08 TCGA-DD-AACW-01 8 22451394 22451394 G T PDLIM2 Missense_Mutation p.A594S 0.46 tolerated(0.05) benign(0.176) TCGA-DD-AACW-01 8 97332514 97332514 G - PTDSS1 Frame_Shift_Del p.G372Dfs*31 0.25 TCGA-DD-AACW-01 9 138838155 138838155 C A UBAC1 Silent p.A168A 0.41 TCGA-DD-AACW-01 9 2101571 2101571 A C SMARCA2 Missense_Mutation p.E1027A 0.72 benign(0.292) TCGA-DD-AACW-01 X 30261048 30261048 C A MAGEB4 Missense_Mutation p.P266T 0.85 deleterious(0) probably_damaging(0.997) TCGA-DD-AACW-01 X 3240024 3240024 G T MXRA5 Missense_Mutation p.H1234Q 0.88 tolerated(0.29) benign(0.002) TCGA-DD-AACW-01 X 48336475 48336475 C T FTSJ1 Missense_Mutation p.R14C 0.05 deleterious(0) probably_damaging(0.995) TCGA-DD-AACW-01 X 55514948 55514948 G C USP51 Missense_Mutation p.P142R 0.74 tolerated_low_confidence(0.25) unknown(0) TCGA-DD-AACX-01 10 120793455 120793455 C A NANOS1 3'UTR 0.40 TCGA-DD-AACX-01 10 24832401 24832401 A G KIAA1217 Missense_Mutation p.H1401R 0.47 tolerated(0.57) benign(0.001) TCGA-DD-AACX-01 10 29818721 29818721 T G SVIL Missense_Mutation p.N720T 0.42 deleterious(0) possibly_damaging(0.78) TCGA-DD-AACX-01 10 35897329 35897329 T A GJD4 Missense_Mutation p.S296R 0.41 tolerated(0.06) probably_damaging(0.937) TCGA-DD-AACX-01 10 51465731 51465731 T A AGAP7 Missense_Mutation p.E242V 0.50 deleterious(0.01) benign(0.412) TCGA-DD-AACX-01 10 55780163 55780163 T A PCDH15 Missense_Mutation p.D847V 0.29 deleterious(0) probably_damaging(1) TCGA-DD-AACX-01 10 68686716 68686716 A G LRRTM3 Silent p.V14V 0.43 TCGA-DD-AACX-01 10 71905831 71905831 G C TYSND1 Missense_Mutation p.S171W 0.39 deleterious(0.04) possibly_damaging(0.663) TCGA-DD-AACX-01 10 8051233 8051233 C T TAF3 Silent p.S836S 0.57 TCGA-DD-AACX-01 11 101946655 101946655 A G C11orf70 Missense_Mutation p.R163G 0.37 deleterious(0) probably_damaging(0.995) TCGA-DD-AACX-01 11 116707867 116707867 T A APOA1 Missense_Mutation p.Q17L 0.49 deleterious(0) probably_damaging(0.998) TCGA-DD-AACX-01 11 124740076 124740076 T A ROBO3 Missense_Mutation p.L261Q 0.45 deleterious(0.04) probably_damaging(1) TCGA-DD-AACX-01 11 124949588 124949588 T C SLC37A2 Silent p.N153N 0.38 TCGA-DD-AACX-01 11 33628297 33628297 C T KIAA1549L Missense_Mutation p.P1367S 0.36 deleterious(0) probably_damaging(1) TCGA-DD-AACX-01 11 47765677 47765677 C T FNBP4 Silent p.V428V 0.55 TCGA-DD-AACX-01 11 55563337 55563337 G T OR5D14 Missense_Mutation p.Q102H 0.40 deleterious(0.01) probably_damaging(0.987) TCGA-DD-AACX-01 11 6541576 6541576 G A DNHD1 Intron 0.42 TCGA-DD-AACX-01 11 66136932 66136932 G A SLC29A2 Silent p.P61P 0.50 TCGA-DD-AACX-01 11 72145609 72145609 A C CLPB 5'UTR 0.35 TCGA-DD-AACX-01 11 8940933 8940933 A C AKIP1 Missense_Mutation p.Y180S 0.40 deleterious(0) probably_damaging(1) TCGA-DD-AACX-01 12 104100584 104100584 T C STAB2 Silent p.C1337C 0.34 TCGA-DD-AACX-01 12 4387935 4387935 C G CCND2 Missense_Mutation p.L141V 0.36 tolerated(0.19) benign(0.153) TCGA-DD-AACX-01 12 49943969 49943969 G A KCNH3 Missense_Mutation p.R592Q 0.54 deleterious(0) probably_damaging(0.991) TCGA-DD-AACX-01 12 72008655 72008655 C A ZFC3H1 Silent p.G1773G 0.43 TCGA-DD-AACX-01 12 82872870 82872870 A T METTL25 3'UTR 0.34 TCGA-DD-AACX-01 13 22033279 22033279 T C ZDHHC20 Missense_Mutation p.Q11R 0.33 tolerated(0.57) benign(0.034) TCGA-DD-AACX-01 13 41910840 41910840 G T NAA16 Missense_Mutation p.G321V 0.36 deleterious(0) probably_damaging(0.997) TCGA-DD-AACX-01 13 43681528 43681528 A G DNAJC15 3'UTR 0.42 TCGA-DD-AACX-01 13 77751932 77751932 T C MYCBP2 Missense_Mutation p.Y1726C 0.36 probably_damaging(1) TCGA-DD-AACX-01 14 101496028 101496028 A G MIR494 RNA 0.76 TCGA-DD-AACX-01 14 39819623 39819623 A G CTAGE5 3'UTR 0.50 TCGA-DD-AACX-01 14 52188702 52188702 G T FRMD6 Nonsense_Mutation p.E466* 0.43 TCGA-DD-AACX-01 14 69256412 69256412 G A ZFP36L1 Silent p.S285S 0.75 TCGA-DD-AACX-01 15 74967425 74967425 C T EDC3 Missense_Mutation p.C14Y 0.41 deleterious(0) probably_damaging(1) TCGA-DD-AACX-01 16 12897629 12897629 G T CPPED1 Nonsense_Mutation p.S2* 0.34 TCGA-DD-AACX-01 16 21053420 21053420 G A DNAH3 Missense_Mutation p.P1523S 0.49 deleterious(0.02) possibly_damaging(0.817) TCGA-DD-AACX-01 16 29908302 29908302 T C SEZ6L2 Missense_Mutation p.T118A 0.37 tolerated(0.79) possibly_damaging(0.636) TCGA-DD-AACX-01 16 31144008 31144008 G C PRSS8 Missense_Mutation p.P178R 0.43 deleterious(0.03) probably_damaging(0.957) TCGA-DD-AACX-01 16 53498217 53498217 C T RBL2 Missense_Mutation p.P547L 0.46 tolerated(0.05) benign(0.248) TCGA-DD-AACX-01 16 67907167 67907167 G A EDC4 Translation_Start_Site p.M1? 0.39 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-DD-AACX-01 16 88496738 88496738 T C ZNF469 Missense_Mutation p.F954L 0.41 benign(0.003) TCGA-DD-AACX-01 16 9943750 9943750 G A GRIN2A Silent p.S397S 0.42 TCGA-DD-AACX-01 17 17127383 17127385 GAA - FLCN In_Frame_Del p.F157del 0.65 TCGA-DD-AACX-01 17 18023832 18023832 C T MYO15A Missense_Mutation p.A573V 0.72 possibly_damaging(0.499) TCGA-DD-AACX-01 17 19454772 19454772 G T SLC47A1 Missense_Mutation p.L178F 0.77 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AACX-01 17 27835056 27835056 T G TAOK1 Missense_Mutation p.L494R 0.20 tolerated(0.25) benign(0.044) TCGA-DD-AACX-01 17 38955938 38955938 C T KRT28 Missense_Mutation p.A70T 0.31 tolerated(0.45) benign(0.002) TCGA-DD-AACX-01 17 42089361 42089361 T C TMEM101 Missense_Mutation p.M237V 0.25 tolerated(0.41) benign(0.14) TCGA-DD-AACX-01 17 61781755 61781755 G A STRADA Missense_Mutation p.S349F 0.56 deleterious(0) probably_damaging(1) TCGA-DD-AACX-01 17 73999349 73999349 C G CDK3 Missense_Mutation p.T221R 0.25 deleterious(0) probably_damaging(0.998) TCGA-DD-AACX-01 18 67993679 67993679 T A SOCS6 3'UTR 0.71 TCGA-DD-AACX-01 18 6965284 6965306 TACCTTGCTTCCGGTTTCGCTGG - LAMA1 Splice_Site p.X2392_splice 0.33 TCGA-DD-AACX-01 19 14938490 14938490 A C OR7A5 Silent p.A188A 0.40 TCGA-DD-AACX-01 19 14938512 14938512 A C OR7A5 Missense_Mutation p.L181R 0.39 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-DD-AACX-01 19 43023248 43023249 - AGACTC CEACAM1 In_Frame_Ins p.S365_L366dup 0.41 TCGA-DD-AACX-01 19 45153129 45153129 A G PVR Missense_Mutation p.E159G 0.48 tolerated(0.11) benign(0.093) TCGA-DD-AACX-01 19 45153140 45153140 A C PVR Missense_Mutation p.M163L 0.44 deleterious(0) benign(0.006) TCGA-DD-AACX-01 19 52031035 52031035 T G SIGLEC6 Missense_Mutation p.D385A 0.44 tolerated(0.56) benign(0.004) TCGA-DD-AACX-01 19 52272248 52272248 G A FPR2 Missense_Mutation p.V113I 0.40 tolerated(0.23) benign(0.441) TCGA-DD-AACX-01 19 53667735 53667735 C G ZNF665 Missense_Mutation p.A670P 0.29 tolerated(0.09) possibly_damaging(0.894) TCGA-DD-AACX-01 19 55284986 55284986 C T KIR2DL1 Missense_Mutation p.T91M 0.38 tolerated(0.07) benign(0.024) TCGA-DD-AACX-01 19 56000833 56000833 C T SSC5D Silent p.A55A 0.33 TCGA-DD-AACX-01 1 152187123 152187123 T C HRNR Missense_Mutation p.S2328G 0.15 unknown(0) TCGA-DD-AACX-01 1 155147913 155147913 A C TRIM46 Missense_Mutation p.M39L 0.28 tolerated(1) benign(0.054) TCGA-DD-AACX-01 1 158301196 158301196 A T CD1B Missense_Mutation p.F6L 0.28 tolerated(1) unknown(0) TCGA-DD-AACX-01 1 183617328 183617328 C G APOBEC4 Missense_Mutation p.V197L 0.33 tolerated(1) benign(0.001) TCGA-DD-AACX-01 1 19612721 19612721 C T AKR7A3 Silent p.P120P 0.41 TCGA-DD-AACX-01 1 201031128 201031128 A G CACNA1S Silent p.N999N 0.52 TCGA-DD-AACX-01 1 201965426 201965426 A - RNPEP Intron 0.38 TCGA-DD-AACX-01 1 202163206 202163206 C A LGR6 Missense_Mutation p.P30Q 0.64 tolerated(0.44) unknown(0) TCGA-DD-AACX-01 1 229633911 229633911 C A NUP133 Missense_Mutation p.G264V 0.28 deleterious(0) probably_damaging(0.999) TCGA-DD-AACX-01 1 229633912 229633912 C A NUP133 Nonsense_Mutation p.G264* 0.28 TCGA-DD-AACX-01 1 243328222 243328222 T A CEP170 Nonsense_Mutation p.R1014* 0.57 TCGA-DD-AACX-01 1 247655265 247655265 A G OR2W5 RNA 0.29 TCGA-DD-AACX-01 1 247712398 247712398 C T GCSAML 5'UTR 0.36 TCGA-DD-AACX-01 1 28224153 28224153 T A RPA2 Missense_Mutation p.R133S 0.39 deleterious(0) possibly_damaging(0.605) TCGA-DD-AACX-01 1 33832762 33832762 T G PHC2 Missense_Mutation p.S311R 0.33 deleterious(0.01) benign(0.025) TCGA-DD-AACX-01 1 36026670 36026670 C G NCDN Missense_Mutation p.F306L 0.31 tolerated(0.07) benign(0.381) TCGA-DD-AACX-01 1 38155511 38155511 C A C1orf109 Silent p.L14L 0.44 TCGA-DD-AACX-01 1 42629120 42629120 C A GUCA2A Missense_Mutation p.K79N 0.45 deleterious(0.01) probably_damaging(0.941) TCGA-DD-AACX-01 1 57340763 57340763 A G C8A Missense_Mutation p.T105A 0.49 deleterious(0) possibly_damaging(0.612) TCGA-DD-AACX-01 1 78098130 78098130 A G ZZZ3 Missense_Mutation p.F304L 0.41 tolerated_low_confidence(0.81) benign(0) TCGA-DD-AACX-01 1 94466454 94466454 C G ABCA4 Silent p.R2139R 0.34 TCGA-DD-AACX-01 20 25655715 25655718 GTAA - ZNF337 Frame_Shift_Del p.L736Vfs*38 0.44 TCGA-DD-AACX-01 20 2591139 2591139 C T TMC2 Silent p.Y496Y 0.78 TCGA-DD-AACX-01 20 43956037 43956037 A G SDC4 Missense_Mutation p.I155T 0.30 tolerated(0.08) benign(0.003) TCGA-DD-AACX-01 20 56227494 56227494 G T PMEPA1 Missense_Mutation p.P160H 0.36 deleterious(0) probably_damaging(1) TCGA-DD-AACX-01 20 6012689 6012689 A G CRLS1 Missense_Mutation p.Y231C 0.78 deleterious(0.01) probably_damaging(0.979) TCGA-DD-AACX-01 20 6022515 6022515 C A LRRN4 Missense_Mutation p.G459V 0.76 tolerated(0.22) possibly_damaging(0.621) TCGA-DD-AACX-01 20 62729870 62729870 G A OPRL1 Silent p.T277T 0.56 TCGA-DD-AACX-01 22 16267071 16267071 C T POTEH Missense_Mutation p.G460R 0.14 tolerated(0.25) benign(0.066) TCGA-DD-AACX-01 22 24494016 24494016 A G CABIN1 Silent p.S1326S 0.40 TCGA-DD-AACX-01 22 38524361 38524361 G A PLA2G6 Silent p.V421V 0.49 TCGA-DD-AACX-01 22 40742624 40742624 A G ADSL Missense_Mutation p.Y21C 0.41 deleterious(0) probably_damaging(0.97) TCGA-DD-AACX-01 22 41574913 41574913 T A EP300 Missense_Mutation p.S2400T 0.35 unknown(0) TCGA-DD-AACX-01 22 41723227 41723227 G T ZC3H7B Silent p.A101A 0.37 TCGA-DD-AACX-01 22 50988160 50988160 C A KLHDC7B Missense_Mutation p.A522D 0.45 deleterious(0) probably_damaging(0.979) TCGA-DD-AACX-01 2 109411169 109411170 - AATTG CCDC138 Frame_Shift_Ins p.Q192Nfs*37 0.38 TCGA-DD-AACX-01 2 155711241 155711241 A G KCNJ3 Missense_Mutation p.M308V 0.43 deleterious(0.01) probably_damaging(0.989) TCGA-DD-AACX-01 2 204309540 204309540 C T RAPH1 Intron 0.56 TCGA-DD-AACX-01 2 20507799 20507800 - TT PUM2 Frame_Shift_Ins p.Q275Nfs*3 0.28 TCGA-DD-AACX-01 2 231368974 231368974 G A SP100 Silent p.K613K 0.30 TCGA-DD-AACX-01 2 37349710 37349710 T C EIF2AK2 Missense_Mutation p.T336A 0.45 tolerated(0.82) benign(0) TCGA-DD-AACX-01 2 84960668 84960668 A - DNAH6 Frame_Shift_Del p.N3437Ifs*11 0.26 TCGA-DD-AACX-01 2 85571364 85571364 G A RETSAT Missense_Mutation p.P455L 0.47 deleterious(0) probably_damaging(0.984) TCGA-DD-AACX-01 3 139074588 139074588 C A COPB2 3'Flank 0.47 TCGA-DD-AACX-01 3 156867722 156867722 T C CCNL1 Silent p.V308V 0.35 TCGA-DD-AACX-01 3 167542319 167542319 A G SERPINI1 Silent p.P375P 0.42 TCGA-DD-AACX-01 3 186364073 186364073 A T FETUB Missense_Mutation p.I211F 0.44 deleterious(0) probably_damaging(0.996) TCGA-DD-AACX-01 3 32933440 32933440 A T TRIM71 3'UTR 0.11 TCGA-DD-AACX-01 3 33759454 33759454 T A CLASP2 Missense_Mutation p.Q14L 0.41 tolerated(0.9) benign(0) TCGA-DD-AACX-01 3 41266107 41266107 T G CTNNB1 Missense_Mutation p.I35S 0.34 deleterious(0) possibly_damaging(0.852) TCGA-DD-AACX-01 3 49936356 49936356 C T MST1R Missense_Mutation p.V498M 0.45 deleterious(0.02) possibly_damaging(0.532) TCGA-DD-AACX-01 3 52356615 52356615 C A DNAH1 Missense_Mutation p.P53T 0.39 benign(0.016) TCGA-DD-AACX-01 3 53267208 53267208 T C TKT Missense_Mutation p.I246V 0.41 tolerated(0.33) benign(0.021) TCGA-DD-AACX-01 3 57107617 57107617 G T SPATA12 5'UTR 0.48 TCGA-DD-AACX-01 3 89391211 89391211 C T EPHA3 Missense_Mutation p.A426V 0.46 tolerated(0.42) probably_damaging(0.99) TCGA-DD-AACX-01 4 118975107 118975107 A G NDST3 Silent p.T14T 0.47 TCGA-DD-AACX-01 4 139153531 139153531 G A SLC7A11 Missense_Mutation p.A137V 0.49 deleterious(0) benign(0.349) TCGA-DD-AACX-01 4 155492103 155492103 G T FGB 3'UTR 0.23 TCGA-DD-AACX-01 4 2813974 2813974 A G SH3BP2 5'UTR 0.49 TCGA-DD-AACX-01 4 30732375 30732375 A T PCDH7 Intron 0.29 TCGA-DD-AACX-01 4 36230968 36230968 C T ARAP2 Silent p.Q47Q 0.39 TCGA-DD-AACX-01 4 48636346 48636346 C A FRYL Missense_Mutation p.A28S 0.40 tolerated(0.25) probably_damaging(0.998) TCGA-DD-AACX-01 4 48636368 48636368 G T FRYL Silent p.L20L 0.42 TCGA-DD-AACX-01 4 74364862 74364862 C T AFM Nonsense_Mutation p.Q441* 0.29 TCGA-DD-AACX-01 5 101748694 101748694 C G SLCO6A1 Missense_Mutation p.K542N 0.44 deleterious(0) probably_damaging(0.991) TCGA-DD-AACX-01 5 127744443 127744443 A G FBN2 Silent p.C334C 0.43 TCGA-DD-AACX-01 5 131607555 131607555 G A PDLIM4 Missense_Mutation p.G248S 0.51 tolerated(0.47) benign(0.309) TCGA-DD-AACX-01 5 138728471 138728471 C T PROB1 Missense_Mutation p.R767H 0.42 deleterious_low_confidence(0.05) benign(0.035) TCGA-DD-AACX-01 5 140562423 140562423 G C PCDHB16 Missense_Mutation p.G97R 0.49 deleterious_low_confidence(0.02) probably_damaging(0.912) TCGA-DD-AACX-01 5 149753925 149753925 G A TCOF1 Silent p.T353T 0.40 TCGA-DD-AACX-01 5 153795396 153795396 C T GALNT10 Silent p.T519T 0.38 TCGA-DD-AACX-01 5 154396709 154396714 AGCAGT - KIF4B In_Frame_Del p.K1097_C1099delinsS 0.36 TCGA-DD-AACX-01 5 159776170 159776170 C T C1QTNF2 3'UTR 0.53 TCGA-DD-AACX-01 5 160059155 160059155 A G ATP10B Missense_Mutation p.V534A 0.46 tolerated(0.27) benign(0.395) TCGA-DD-AACX-01 5 180043367 180043367 A T FLT4 Missense_Mutation p.S1073R 0.33 deleterious(0.01) possibly_damaging(0.598) TCGA-DD-AACX-01 5 33616019 33616019 C T ADAMTS12 Missense_Mutation p.A768T 0.36 deleterious(0) probably_damaging(0.967) TCGA-DD-AACX-01 5 35807283 35807283 T C SPEF2 Silent p.I1769I 0.41 TCGA-DD-AACX-01 5 40843445 40843445 G A CARD6 Missense_Mutation p.A159T 0.36 deleterious(0.04) benign(0.069) TCGA-DD-AACX-01 5 58295717 58295717 G A PDE4D Intron 0.40 TCGA-DD-AACX-01 5 93076773 93076773 C T POU5F2 Missense_Mutation p.R166H 0.09 deleterious(0.03) possibly_damaging(0.694) TCGA-DD-AACX-01 6 109481821 109481821 T G CEP57L1 Missense_Mutation p.S355A 0.48 tolerated(0.51) benign(0.075) TCGA-DD-AACX-01 6 110763848 110763848 C A SLC22A16 Missense_Mutation p.G261V 0.41 deleterious(0) probably_damaging(0.969) TCGA-DD-AACX-01 6 126199417 126199417 C G NCOA7 Missense_Mutation p.N120K 0.44 deleterious(0.01) benign(0.099) TCGA-DD-AACX-01 6 13615631 13615631 C A NOL7 Nonsense_Mutation p.S14* 0.28 TCGA-DD-AACX-01 6 137330583 137330583 G T IL20RA Silent p.S150S 0.34 TCGA-DD-AACX-01 6 14118190 14118190 T C CD83 Missense_Mutation p.L16P 0.46 deleterious(0.03) probably_damaging(0.993) TCGA-DD-AACX-01 6 159672391 159672391 C A FNDC1 Missense_Mutation p.A1631E 0.33 deleterious(0) probably_damaging(0.982) TCGA-DD-AACX-01 6 170155462 170155462 A T ERMARD Nonsense_Mutation p.K87* 0.38 TCGA-DD-AACX-01 6 32947653 32947653 T - BRD2 Frame_Shift_Del p.Y666Mfs*12 0.31 TCGA-DD-AACX-01 6 44224447 44224447 G T SLC35B2 Missense_Mutation p.F60L 0.43 tolerated(0.58) benign(0) TCGA-DD-AACX-01 7 121652900 121652900 A T PTPRZ1 Missense_Mutation p.E1267V 0.39 deleterious_low_confidence(0) possibly_damaging(0.588) TCGA-DD-AACX-01 7 50450271 50450271 C T IKZF1 Missense_Mutation p.A152V 0.38 deleterious(0) probably_damaging(0.977) TCGA-DD-AACX-01 7 87369128 87369128 A C RUNDC3B Silent p.A177A 0.37 TCGA-DD-AACX-01 8 121282378 121282378 G A COL14A1 Missense_Mutation p.G1060R 0.42 tolerated(0.05) probably_damaging(0.998) TCGA-DD-AACX-01 8 124664197 124664197 T C KLHL38 Missense_Mutation p.K324E 0.43 deleterious(0.03) benign(0.254) TCGA-DD-AACX-01 8 24366273 24366274 - A ADAM7 3'UTR 0.38 TCGA-DD-AACX-01 8 40532253 40532253 C A ZMAT4 Missense_Mutation p.G183W 0.41 deleterious(0) probably_damaging(1) TCGA-DD-AACX-01 8 6360354 6360354 T A ANGPT2 3'UTR 0.50 TCGA-DD-AACX-01 8 95508121 95508121 T C KIAA1429 Splice_Site p.X1462_splice 0.38 TCGA-DD-AACX-01 9 107298521 107298521 G A OR13C3 Missense_Mutation p.L192F 0.48 tolerated(0.18) possibly_damaging(0.656) TCGA-DD-AACX-01 9 125437750 125437750 C A OR1L3 Silent p.L114L 0.32 TCGA-DD-AACX-01 9 127253385 127253385 G A NR5A1 Silent p.L371L 0.42 TCGA-DD-AACX-01 9 135983386 135983386 G A RALGDS Silent p.L396L 0.38 TCGA-DD-AACX-01 9 33676544 33676544 C T PTENP1 RNA 0.42 TCGA-DD-AACX-01 9 79318782 79318782 C T PRUNE2 Missense_Mutation p.E2583K 0.42 tolerated(0.07) benign(0.055) TCGA-DD-AACX-01 9 80537145 80537145 T G GNAQ Missense_Mutation p.T85P 0.38 deleterious(0.04) benign(0.281) TCGA-DD-AACX-01 9 97325637 97325637 C A FBP2 Missense_Mutation p.S271I 0.42 deleterious(0.01) possibly_damaging(0.863) TCGA-DD-AACX-01 X 155004899 155004899 T C SPRY3 3'UTR 0.42 TCGA-DD-AACX-01 X 47485892 47485892 C - CFP Frame_Shift_Del p.E323Sfs*10 0.43 TCGA-DD-AACX-01 X 48418426 48418426 T C TBC1D25 Missense_Mutation p.F377S 0.83 deleterious(0) probably_damaging(0.999) TCGA-DD-AACX-01 X 71925044 71925044 T A PHKA1 Intron 0.82 TCGA-DD-AACY-01 10 103285923 103285923 C A BTRC Missense_Mutation p.S237Y 0.05 tolerated(0.13) benign(0.072) TCGA-DD-AACY-01 10 120450798 120450798 A C CACUL1 Missense_Mutation p.L335R 0.28 deleterious(0) probably_damaging(0.994) TCGA-DD-AACY-01 10 127529548 127529548 G T DHX32 Missense_Mutation p.H521N 0.38 tolerated(0.3) benign(0.001) TCGA-DD-AACY-01 10 127529549 127529549 T G DHX32 Silent p.S520S 0.40 TCGA-DD-AACY-01 10 17271486 17271486 G T VIM Missense_Mutation p.S22I 0.43 tolerated(0.05) benign(0) TCGA-DD-AACY-01 10 25312254 25312254 A C THNSL1 Silent p.S34S 0.44 TCGA-DD-AACY-01 10 77159207 77159220 GCCAAAGGGCTGGA - ZNF503 Frame_Shift_Del p.S410Rfs*25 0.23 TCGA-DD-AACY-01 10 90695169 90695169 T C ACTA2 Intron 0.34 TCGA-DD-AACY-01 10 96269915 96269915 A T TBC1D12 Silent p.P556P 0.46 TCGA-DD-AACY-01 10 97192295 97192295 C A SORBS1 Missense_Mutation p.V71L 0.06 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-DD-AACY-01 11 1094728 1094728 C T MUC2 Missense_Mutation p.T1939M 0.35 unknown(0) TCGA-DD-AACY-01 11 5799571 5799571 G A OR52N5 Silent p.L98L 0.08 TCGA-DD-AACY-01 11 61252246 61252246 G C PPP1R32 Missense_Mutation p.Q156H 0.36 tolerated(0.06) probably_damaging(0.922) TCGA-DD-AACY-01 11 73817446 73817446 T G C2CD3 Missense_Mutation p.E685D 0.40 tolerated(0.17) possibly_damaging(0.836) TCGA-DD-AACY-01 12 120741863 120741863 T G SIRT4 Splice_Site p.X166_splice 0.36 TCGA-DD-AACY-01 12 122459865 122459865 A T BCL7A 5'UTR 0.15 TCGA-DD-AACY-01 12 56081819 56081819 A G ITGA7 Missense_Mutation p.V1044A 0.27 deleterious(0.01) benign(0.007) TCGA-DD-AACY-01 12 56081826 56081826 A G ITGA7 Missense_Mutation p.W1042R 0.29 deleterious(0) possibly_damaging(0.667) TCGA-DD-AACY-01 12 69992133 69992133 A G CCT2 Missense_Mutation p.Y456C 0.30 deleterious(0) probably_damaging(0.979) TCGA-DD-AACY-01 12 85441230 85441230 A C LRRIQ1 Missense_Mutation p.K220N 0.25 deleterious(0) possibly_damaging(0.776) TCGA-DD-AACY-01 12 88584233 88584233 A G TMTC3 Missense_Mutation p.I514V 0.10 tolerated(0.07) benign(0.149) TCGA-DD-AACY-01 13 24864943 24864943 C G SPATA13 Missense_Mutation p.L1001V 0.42 deleterious(0) probably_damaging(0.999) TCGA-DD-AACY-01 14 105407215 105407215 C A AHNAK2 Missense_Mutation p.G4858V 0.30 possibly_damaging(0.891) TCGA-DD-AACY-01 14 24517969 24517969 T A LRRC16B 5'Flank 0.36 TCGA-DD-AACY-01 15 34634207 34634207 T C NOP10 Missense_Mutation p.K53E 0.43 deleterious(0.01) benign(0.077) TCGA-DD-AACY-01 15 62985037 62985037 A G TLN2 Splice_Site p.X372_splice 0.05 TCGA-DD-AACY-01 15 74277025 74277025 G T STOML1 Missense_Mutation p.S326R 0.05 tolerated(0.24) benign(0.009) TCGA-DD-AACY-01 15 84237305 84237305 T C SH3GL3 Missense_Mutation p.L71P 0.44 deleterious(0.01) probably_damaging(0.993) TCGA-DD-AACY-01 15 88670420 88670420 G C NTRK3 Silent p.T422T 0.45 TCGA-DD-AACY-01 16 72923737 72923737 C T ZFHX3 Missense_Mutation p.R1114Q 0.11 possibly_damaging(0.459) TCGA-DD-AACY-01 16 89337284 89337284 T A ANKRD11 Missense_Mutation p.N2583Y 0.45 probably_damaging(0.999) TCGA-DD-AACY-01 17 15965046 15965046 T A NCOR1 Missense_Mutation p.E1850D 0.36 probably_damaging(0.986) TCGA-DD-AACY-01 17 27027983 27027983 C T SUPT6H Missense_Mutation p.P1611S 0.30 tolerated(0.45) benign(0.026) TCGA-DD-AACY-01 17 48266329 48266329 G T COL1A1 Missense_Mutation p.R994S 0.34 unknown(0) TCGA-DD-AACY-01 17 76354878 76354878 C - SOCS3 Frame_Shift_Del p.G100Afs*79 0.27 TCGA-DD-AACY-01 17 78164640 78164640 G A CARD14 Missense_Mutation p.R344K 0.25 tolerated(1) benign(0.002) TCGA-DD-AACY-01 18 21758132 21758132 G T OSBPL1A Silent p.S646S 0.40 TCGA-DD-AACY-01 18 55217834 55217834 T C FECH 3'UTR 0.52 TCGA-DD-AACY-01 18 66678323 66678323 C T CCDC102B Silent p.L472L 0.06 TCGA-DD-AACY-01 18 73122775 73122775 G A SMIM21 3'UTR 0.43 TCGA-DD-AACY-01 19 1497784 1497784 G A REEP6 3'UTR 0.41 TCGA-DD-AACY-01 19 36247733 36247733 G A HSPB6 Silent p.S59S 0.07 TCGA-DD-AACY-01 19 38867017 38867017 A T PSMD8 Missense_Mutation p.Q153H 0.46 tolerated(0.54) benign(0.087) TCGA-DD-AACY-01 19 47200429 47200429 G A PRKD2 Silent p.T434T 0.49 TCGA-DD-AACY-01 19 53056997 53056997 C G ZNF808 Missense_Mutation p.C276W 0.34 tolerated(0.19) probably_damaging(0.934) TCGA-DD-AACY-01 19 53117612 53117612 T G ZNF83 Missense_Mutation p.H69P 0.39 deleterious(0.02) probably_damaging(0.964) TCGA-DD-AACY-01 19 5587219 5587219 C T SAFB2 3'UTR 0.45 TCGA-DD-AACY-01 19 8587279 8587279 T C MYO1F Missense_Mutation p.I1068V 0.53 tolerated(0.11) benign(0.114) TCGA-DD-AACY-01 1 100152744 100152744 A G PALMD Silent p.K171K 0.34 TCGA-DD-AACY-01 1 109814231 109814231 A T CELSR2 Missense_Mutation p.I2605F 0.47 deleterious(0) probably_damaging(0.985) TCGA-DD-AACY-01 1 157103988 157103988 T G ETV3 Missense_Mutation p.T106P 0.39 deleterious(0) probably_damaging(0.998) TCGA-DD-AACY-01 1 157104005 157104005 T C ETV3 Missense_Mutation p.K100R 0.37 deleterious(0) probably_damaging(1) TCGA-DD-AACY-01 1 169819420 169819420 A C C1orf112 Missense_Mutation p.E726D 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AACY-01 1 179063230 179063230 A T TOR3A Missense_Mutation p.N274I 0.36 deleterious(0) probably_damaging(0.996) TCGA-DD-AACY-01 1 225525877 225525877 A T DNAH14 Missense_Mutation p.N3383Y 0.48 possibly_damaging(0.462) TCGA-DD-AACY-01 1 39824861 39824862 - A MACF1 Frame_Shift_Ins p.V1997Sfs*4 0.12 TCGA-DD-AACY-01 1 41608748 41608748 T A SCMH1 Missense_Mutation p.M62L 0.37 deleterious(0) probably_damaging(0.99) TCGA-DD-AACY-01 1 65311203 65311203 C A JAK1 Missense_Mutation p.S703I 0.47 deleterious(0) probably_damaging(0.999) TCGA-DD-AACY-01 1 65311219 65311219 G A JAK1 Silent p.L698L 0.45 TCGA-DD-AACY-01 1 85537689 85537689 G A WDR63 Splice_Site p.X22_splice 0.38 TCGA-DD-AACY-01 1 95710153 95710153 A G RWDD3 Missense_Mutation p.I158V 0.42 tolerated(0.23) benign(0.001) TCGA-DD-AACY-01 20 10393869 10393869 A C MKKS Silent p.L98L 0.35 TCGA-DD-AACY-01 20 3765921 3765921 C G CENPB Missense_Mutation p.E404Q 0.33 tolerated(0.11) unknown(0) TCGA-DD-AACY-01 20 3766831 3766831 G C CENPB Silent p.L100L 0.33 TCGA-DD-AACY-01 22 24515513 24515539 CCCCAGGGGCTGCCGGCTGGTGCTGAG - CABIN1 In_Frame_Del p.P1494_E1502del 0.33 TCGA-DD-AACY-01 22 30690978 30690978 C A TBC1D10A Missense_Mutation p.Q204H 0.23 deleterious(0) probably_damaging(0.998) TCGA-DD-AACY-01 22 35782898 35782898 G T HMOX1 Missense_Mutation p.G122V 0.08 deleterious(0) probably_damaging(1) TCGA-DD-AACY-01 22 38978643 38978643 G C FAM227A Intron 0.44 TCGA-DD-AACY-01 22 41833266 41833266 A G TOB2 Silent p.F28F 0.38 TCGA-DD-AACY-01 22 43634740 43634740 G A SCUBE1 Intron 0.45 TCGA-DD-AACY-01 2 149868088 149868088 G A KIF5C Silent p.K924K 0.33 TCGA-DD-AACY-01 2 173338923 173338923 A G ITGA6 Missense_Mutation p.I306V 0.37 tolerated(0.39) benign(0.007) TCGA-DD-AACY-01 2 173429803 173429803 T G PDK1 Splice_Site p.X231_splice 0.33 TCGA-DD-AACY-01 2 19553489 19553489 T G OSR1 Silent p.A26A 0.42 TCGA-DD-AACY-01 2 197092916 197092916 G C HECW2 Missense_Mutation p.P1276R 0.44 deleterious(0) probably_damaging(1) TCGA-DD-AACY-01 2 217341834 217341834 G T SMARCAL1 Silent p.V810V 0.38 TCGA-DD-AACY-01 2 27535603 27535603 G T MPV17 Silent p.R75R 0.09 TCGA-DD-AACY-01 2 39033812 39033812 A C DHX57 Missense_Mutation p.F1235L 0.39 tolerated(0.05) benign(0.044) TCGA-DD-AACY-01 2 43019665 43019665 G A HAAO Silent p.R4R 0.37 TCGA-DD-AACY-01 2 46609728 46609728 A G EPAS1 Missense_Mutation p.K818E 0.36 deleterious(0) benign(0.371) TCGA-DD-AACY-01 2 48602157 48602167 TCTTTAGCCAC - FOXN2 Frame_Shift_Del p.S291Qfs*3 0.36 TCGA-DD-AACY-01 2 48602189 48602189 T G FOXN2 Missense_Mutation p.D301E 0.31 deleterious(0) probably_damaging(0.996) TCGA-DD-AACY-01 2 73438052 73438052 G A NOTO Missense_Mutation p.G251S 0.11 tolerated_low_confidence(0.11) possibly_damaging(0.862) TCGA-DD-AACY-01 3 122631890 122631890 A G SEMA5B Missense_Mutation p.L896P 0.52 deleterious(0.01) probably_damaging(0.97) TCGA-DD-AACY-01 3 12458591 12458591 A T PPARG Missense_Mutation p.N403I 0.28 deleterious(0) probably_damaging(0.999) TCGA-DD-AACY-01 3 134873108 134873108 A G EPHB1 Missense_Mutation p.Y471C 0.37 deleterious(0.01) possibly_damaging(0.628) TCGA-DD-AACY-01 3 14768519 14768519 T C C3orf20 Silent p.L560L 0.04 TCGA-DD-AACY-01 3 154032979 154032979 T A DHX36 Missense_Mutation p.K153N 0.05 tolerated(0.23) benign(0.028) TCGA-DD-AACY-01 3 16368341 16368341 G - RFTN1 Frame_Shift_Del p.L397Wfs*63 0.33 TCGA-DD-AACY-01 3 164776811 164776811 C T SI Silent p.R446R 0.05 TCGA-DD-AACY-01 3 197678059 197678059 A G RPL35A Missense_Mutation p.Y14C 0.38 deleterious(0.01) possibly_damaging(0.757) TCGA-DD-AACY-01 3 58410540 58410540 T G PXK Silent p.P530P 0.35 TCGA-DD-AACY-01 3 9102039 9102039 T G SRGAP3 Missense_Mutation p.Q226P 0.40 deleterious(0) probably_damaging(0.954) TCGA-DD-AACY-01 4 106158700 106158700 A G TET2 Intron 0.38 TCGA-DD-AACY-01 4 123179993 123179993 A G KIAA1109 Missense_Mutation p.I2253V 0.41 possibly_damaging(0.683) TCGA-DD-AACY-01 4 60041 60041 C A ZNF595 Missense_Mutation p.P74H 0.04 tolerated_low_confidence(0.39) benign(0.006) TCGA-DD-AACY-01 5 112364595 112364595 G A MCC Intron 0.45 TCGA-DD-AACY-01 5 133942642 133942642 A - SAR1B Frame_Shift_Del p.*199N 0.30 TCGA-DD-AACY-01 5 137665271 137665271 A T CDC25C Missense_Mutation p.L87H 0.25 deleterious(0.02) possibly_damaging(0.907) TCGA-DD-AACY-01 5 151784554 151784554 G A NMUR2 Missense_Mutation p.R41C 0.44 deleterious(0) probably_damaging(0.964) TCGA-DD-AACY-01 5 86633866 86633866 A G RASA1 Silent p.T325T 0.33 TCGA-DD-AACY-01 5 86633867 86633867 G A RASA1 Missense_Mutation p.D326N 0.33 tolerated(0.48) benign(0.015) TCGA-DD-AACY-01 5 98262046 98262046 T G CHD1 Silent p.G15G 0.33 TCGA-DD-AACY-01 6 100016454 100016454 G T CCNC 5'UTR 0.16 TCGA-DD-AACY-01 6 24547192 24547192 A T KIAA0319 3'UTR 0.38 TCGA-DD-AACY-01 6 30652197 30652197 T A PPP1R18 Missense_Mutation p.R533S 0.57 deleterious(0.03) probably_damaging(0.999) TCGA-DD-AACY-01 6 91229026 91229026 G A MAP3K7 Missense_Mutation p.S492L 0.48 tolerated(0.15) benign(0.082) TCGA-DD-AACY-01 7 100491024 100491024 C A ACHE Missense_Mutation p.R277L 0.41 tolerated(0.06) probably_damaging(0.958) TCGA-DD-AACY-01 7 107115755 107115755 A G GPR22 Missense_Mutation p.E417G 0.03 deleterious(0.04) benign(0.039) TCGA-DD-AACY-01 7 136701535 136701535 T C CHRM2 3'UTR 0.39 TCGA-DD-AACY-01 7 151874011 151874011 C T KMT2C Missense_Mutation p.D2843N 0.49 benign(0.002) TCGA-DD-AACY-01 7 21882173 21882173 T A DNAH11 Missense_Mutation p.I3575N 0.37 probably_damaging(0.987) TCGA-DD-AACY-01 7 55248998 55248999 - TGGCCAGCG EGFR In_Frame_Ins p.A767_V769dup 0.18 TCGA-DD-AACY-01 7 93555690 93555690 T G GNG11 3'UTR 0.43 TCGA-DD-AACY-01 7 98586442 98586442 G T TRRAP Silent p.L3152L 0.32 TCGA-DD-AACY-01 8 101721828 101721828 A C PABPC1 Silent p.A368A 0.72 TCGA-DD-AACY-01 8 103663642 103663642 C A KLF10 Silent p.V306V 0.31 TCGA-DD-AACY-01 8 28908785 28908785 A C HMBOX1 3'UTR 0.22 TCGA-DD-AACY-01 8 39535052 39535052 G A ADAM18 Missense_Mutation p.R543Q 0.45 tolerated(0.35) benign(0.002) TCGA-DD-AACY-01 9 131749966 131749966 T C NUP188 Missense_Mutation p.I788T 0.04 deleterious(0) probably_damaging(0.932) TCGA-DD-AACY-01 9 16436154 16436154 C T BNC2 Missense_Mutation p.E680K 0.40 tolerated(0.26) benign(0.024) TCGA-DD-AACY-01 9 79252403 79252403 C T PRUNE2 Missense_Mutation p.G2965D 0.28 deleterious(0) probably_damaging(1) TCGA-DD-AACY-01 9 79322011 79322011 A G PRUNE2 Silent p.L1727L 0.06 TCGA-DD-AACY-01 X 122772802 122772802 T G THOC2 Missense_Mutation p.N608T 0.77 tolerated(0.08) benign(0.038) TCGA-DD-AACY-01 X 3240425 3240425 C T MXRA5 Missense_Mutation p.G1101S 0.07 tolerated(0.65) benign(0.057) TCGA-DD-AACZ-01 10 1063189 1063189 T C GTPBP4 3'UTR 0.42 TCGA-DD-AACZ-01 10 124183766 124183766 G A PLEKHA1 Missense_Mutation p.E245K 0.41 deleterious(0.01) probably_damaging(0.996) TCGA-DD-AACZ-01 10 22616977 22616977 G C BMI1 Missense_Mutation p.D139H 0.06 tolerated(0.05) possibly_damaging(0.634) TCGA-DD-AACZ-01 10 43312077 43312077 A C BMS1 Missense_Mutation p.E787A 0.27 deleterious(0) benign(0.075) TCGA-DD-AACZ-01 10 49939214 49939214 A T WDFY4 Missense_Mutation p.S397C 0.21 deleterious(0.02) possibly_damaging(0.765) TCGA-DD-AACZ-01 10 50902760 50902760 A T C10orf53 Intron 0.22 TCGA-DD-AACZ-01 10 58119616 58119616 T A ZWINT Splice_Site p.X86_splice 0.27 TCGA-DD-AACZ-01 10 5842576 5842576 T G GDI2 Silent p.I46I 0.33 TCGA-DD-AACZ-01 10 59956280 59956280 C T IPMK Missense_Mutation p.D270N 0.08 tolerated(0.26) benign(0.063) TCGA-DD-AACZ-01 10 70719759 70719759 G A DDX21 Silent p.L95L 0.43 TCGA-DD-AACZ-01 10 7618817 7618817 A T ITIH5 Missense_Mutation p.L526Q 0.24 deleterious(0) probably_damaging(0.991) TCGA-DD-AACZ-01 11 102447935 102447935 T C MMP20 3'UTR 0.18 TCGA-DD-AACZ-01 11 113209515 113209515 A T TTC12 Missense_Mutation p.K199M 0.43 deleterious(0) probably_damaging(0.994) TCGA-DD-AACZ-01 11 124013257 124013257 T C VWA5A Missense_Mutation p.I711T 0.35 tolerated(0.08) benign(0.032) TCGA-DD-AACZ-01 11 21596719 21596719 G T NELL1 3'UTR 0.57 TCGA-DD-AACZ-01 11 26559010 26559010 T A ANO3 Splice_Site p.X344_splice 0.18 TCGA-DD-AACZ-01 11 279503 279503 C A NLRP6 Missense_Mutation p.A69D 0.36 deleterious(0.01) possibly_damaging(0.485) TCGA-DD-AACZ-01 11 431745 431745 G A ANO9 Missense_Mutation p.T163M 0.30 deleterious(0.01) benign(0.386) TCGA-DD-AACZ-01 11 4675514 4675514 G T OR51E1 3'UTR 0.18 TCGA-DD-AACZ-01 11 4945292 4945292 T C OR51G1 Missense_Mutation p.E93G 0.17 deleterious(0.02) benign(0.082) TCGA-DD-AACZ-01 11 55861433 55861433 A G OR8I2 Missense_Mutation p.Y217C 0.38 deleterious(0) probably_damaging(0.999) TCGA-DD-AACZ-01 11 72525573 72525573 C A ATG16L2 Missense_Mutation p.T28K 0.17 tolerated(0.1) benign(0.01) TCGA-DD-AACZ-01 11 73141779 73141779 T A FAM168A Missense_Mutation p.Y36F 0.16 deleterious(0.02) probably_damaging(0.953) TCGA-DD-AACZ-01 11 75188814 75188814 G A GDPD5 5'UTR 0.18 TCGA-DD-AACZ-01 11 78369171 78369171 A T TENM4 Missense_Mutation p.Y2748N 0.38 deleterious(0.01) probably_damaging(0.968) TCGA-DD-AACZ-01 11 78387204 78387204 C T TENM4 Missense_Mutation p.R1830Q 0.16 deleterious(0.01) possibly_damaging(0.474) TCGA-DD-AACZ-01 11 86802424 86802424 A T TMEM135 Missense_Mutation p.Y128F 0.19 deleterious(0) probably_damaging(0.998) TCGA-DD-AACZ-01 12 101480526 101480526 T C ANO4 Missense_Mutation p.I507T 0.25 tolerated(0.2) possibly_damaging(0.757) TCGA-DD-AACZ-01 12 12006418 12006418 T - ETV6 Frame_Shift_Del p.S131Hfs*78 0.20 TCGA-DD-AACZ-01 12 30837345 30837345 T A IPO8 Silent p.R71R 0.31 TCGA-DD-AACZ-01 12 41410583 41410583 C T CNTN1 Missense_Mutation p.P762S 0.32 tolerated(0.2) possibly_damaging(0.829) TCGA-DD-AACZ-01 12 44782177 44782177 C T TMEM117 Missense_Mutation p.R423C 0.31 tolerated_low_confidence(0.12) benign(0.319) TCGA-DD-AACZ-01 12 52754465 52754465 A T KRT85 3'UTR 0.28 TCGA-DD-AACZ-01 12 52962149 52962149 C T KRT74 Missense_Mutation p.A387T 0.11 tolerated(0.11) benign(0.202) TCGA-DD-AACZ-01 12 53189455 53189455 G A KRT3 Silent p.G124G 0.31 TCGA-DD-AACZ-01 12 54348808 54348808 C A HOXC12 Missense_Mutation p.S32Y 0.29 deleterious(0) possibly_damaging(0.903) TCGA-DD-AACZ-01 12 54797997 54797997 G A ITGA5 Silent p.L499L 0.22 TCGA-DD-AACZ-01 12 65460513 65460513 A G WIF1 Missense_Mutation p.L213P 0.30 deleterious(0) probably_damaging(0.997) TCGA-DD-AACZ-01 12 6857973 6857973 G T MLF2 Silent p.R245R 0.10 TCGA-DD-AACZ-01 12 74686283 74686283 G A RP11-81H3.2 RNA 0.24 TCGA-DD-AACZ-01 12 75601469 75601469 C A KCNC2 Missense_Mutation p.G99C 0.27 deleterious(0.02) possibly_damaging(0.801) TCGA-DD-AACZ-01 12 80982127 80982127 A G PTPRQ Missense_Mutation p.Y1498C 0.32 tolerated(0.08) possibly_damaging(0.749) TCGA-DD-AACZ-01 13 30066851 30066851 T A MTUS2 Missense_Mutation p.L1202M 0.15 deleterious(0) probably_damaging(1) TCGA-DD-AACZ-01 13 31205172 31205172 A G USPL1 Silent p.G143G 0.10 TCGA-DD-AACZ-01 13 37271081 37271081 A G SERTM1 3'UTR 0.17 TCGA-DD-AACZ-01 13 78163340 78163340 C A SCEL Missense_Mutation p.Q203K 0.22 tolerated(0.08) benign(0.266) TCGA-DD-AACZ-01 13 78472337 78472337 A C EDNRB Nonstop_Mutation p.*533Gext*18 0.18 TCGA-DD-AACZ-01 14 101347044 101347044 C A RTL1 3'UTR 0.25 TCGA-DD-AACZ-01 14 104436890 104436890 A G TDRD9 Missense_Mutation p.T260A 0.12 deleterious(0.03) possibly_damaging(0.899) TCGA-DD-AACZ-01 14 23567275 23567275 A G C14orf119 Silent p.T136T 0.24 TCGA-DD-AACZ-01 14 31604292 31604292 T C HECTD1 Missense_Mutation p.N1122D 0.16 deleterious(0.05) benign(0.036) TCGA-DD-AACZ-01 14 45465007 45465007 T G FAM179B Missense_Mutation p.V702G 0.15 tolerated(0.16) benign(0.019) TCGA-DD-AACZ-01 14 51290024 51290024 T A NIN Intron 0.21 TCGA-DD-AACZ-01 14 54416923 54416923 T A BMP4 Missense_Mutation p.T352S 0.18 deleterious(0.04) probably_damaging(0.909) TCGA-DD-AACZ-01 14 63246579 63246579 T C KCNH5 Missense_Mutation p.N629S 0.18 tolerated(0.13) possibly_damaging(0.871) TCGA-DD-AACZ-01 14 64998591 64998591 G A RP11-973N13.4 Intron 0.17 TCGA-DD-AACZ-01 14 69262495 69262496 - TGTC ZFP36L1 5'Flank 0.17 TCGA-DD-AACZ-01 14 70238223 70238223 A G SRSF5 3'UTR 0.14 TCGA-DD-AACZ-01 14 89258735 89258735 T A EML5 Missense_Mutation p.Y38F 0.20 tolerated(0.08) possibly_damaging(0.828) TCGA-DD-AACZ-01 15 20662957 20662957 A G HERC2P3 RNA 0.09 TCGA-DD-AACZ-01 15 40660665 40660665 C A DISP2 Silent p.G784G 0.28 TCGA-DD-AACZ-01 15 43819399 43819399 C T MAP1A Missense_Mutation p.R1910C 0.17 probably_damaging(0.999) TCGA-DD-AACZ-01 15 50751310 50751310 C T USP8 Missense_Mutation p.A150V 0.24 tolerated(0.05) benign(0.01) TCGA-DD-AACZ-01 15 50885907 50885907 T C TRPM7 Missense_Mutation p.D1172G 0.31 deleterious(0.01) benign(0.271) TCGA-DD-AACZ-01 15 73020331 73020332 - A BBS4 Frame_Shift_Ins p.Q214Tfs*10 0.20 TCGA-DD-AACZ-01 15 76183289 76183289 G C UBE2Q2 Silent p.S321S 0.28 TCGA-DD-AACZ-01 15 78582307 78582307 G C WDR61 Missense_Mutation p.L152V 0.10 deleterious(0.01) possibly_damaging(0.515) TCGA-DD-AACZ-01 16 1821508 1821508 C T NME3 Missense_Mutation p.A10T 0.19 deleterious(0.02) benign(0.322) TCGA-DD-AACZ-01 16 19468024 19468024 A C TMC5 Intron 0.42 TCGA-DD-AACZ-01 16 67902495 67902495 A T NUTF2 Missense_Mutation p.Q88L 0.53 deleterious(0) probably_damaging(0.989) TCGA-DD-AACZ-01 17 11701056 11701056 A T DNAH9 Missense_Mutation p.N2789I 0.35 probably_damaging(0.999) TCGA-DD-AACZ-01 17 27909015 27909015 G T GIT1 Missense_Mutation p.L185M 0.12 deleterious(0.05) probably_damaging(0.999) TCGA-DD-AACZ-01 17 28778776 28778776 T C CPD Silent p.D1039D 0.38 TCGA-DD-AACZ-01 17 30538176 30538176 C G RHOT1 Missense_Mutation p.T626R 0.08 deleterious_low_confidence(0.02) unknown(0) TCGA-DD-AACZ-01 17 32905904 32905904 T A C17orf102 Silent p.T132T 0.35 TCGA-DD-AACZ-01 17 39150197 39150197 A T KRTAP3-3 Nonsense_Mutation p.C51* 0.07 TCGA-DD-AACZ-01 17 41590838 41590838 A T DHX8 Missense_Mutation p.I871F 0.45 deleterious(0) benign(0.374) TCGA-DD-AACZ-01 17 48262774 48262774 G C COL1A1 3'UTR 0.18 TCGA-DD-AACZ-01 17 48655580 48655580 C T CACNA1G Silent p.S652S 0.09 TCGA-DD-AACZ-01 17 61623190 61623190 G A KCNH6 Missense_Mutation p.G971D 0.38 tolerated_low_confidence(0.54) benign(0.001) TCGA-DD-AACZ-01 17 61895571 61895571 C T DDX42 Missense_Mutation p.A877V 0.34 tolerated_low_confidence(0.38) benign(0.001) TCGA-DD-AACZ-01 17 62007563 62007563 T A CD79B Missense_Mutation p.N102Y 0.09 deleterious(0.01) probably_damaging(0.94) TCGA-DD-AACZ-01 17 62553767 62553767 T C SMURF2 Missense_Mutation p.I464V 0.10 tolerated(0.45) benign(0.002) TCGA-DD-AACZ-01 17 72741768 72741768 T A RAB37 3'UTR 0.15 TCGA-DD-AACZ-01 17 75139670 75139670 A T SEC14L1 5'UTR 0.08 TCGA-DD-AACZ-01 17 7577148 7577149 GA AAC TP53 Frame_Shift_Ins p.N263Kfs*9 0.28 TCGA-DD-AACZ-01 17 76445590 76445590 A T DNAH17 Missense_Mutation p.L3692Q 0.41 probably_damaging(0.998) TCGA-DD-AACZ-01 17 7909980 7909980 A T GUCY2D Silent p.A442A 0.34 TCGA-DD-AACZ-01 18 33689641 33689641 T A SLC39A6 Missense_Mutation p.Q728L 0.52 deleterious(0) probably_damaging(0.999) TCGA-DD-AACZ-01 18 56056334 56056334 C T NEDD4L Silent p.L855L 0.06 TCGA-DD-AACZ-01 18 61310753 61310753 C G SERPINB4 Missense_Mutation p.R20T 0.47 tolerated(0.06) possibly_damaging(0.722) TCGA-DD-AACZ-01 19 11143993 11143993 C T SMARCA4 Missense_Mutation p.R1192C 0.46 probably_damaging(1) TCGA-DD-AACZ-01 19 17411707 17411707 C T ABHD8 Missense_Mutation p.R240H 0.15 deleterious(0.05) benign(0.258) TCGA-DD-AACZ-01 19 36510204 36510204 C T CLIP3 Missense_Mutation p.G308D 0.59 deleterious(0) probably_damaging(1) TCGA-DD-AACZ-01 19 36545927 36545927 G A WDR62 Silent p.L18L 0.67 TCGA-DD-AACZ-01 19 46272022 46272022 C G SIX5 Missense_Mutation p.E27D 0.50 tolerated_low_confidence(0.12) unknown(0) TCGA-DD-AACZ-01 19 48908538 48908538 A T GRIN2D Missense_Mutation p.Y338F 0.59 tolerated(0.14) benign(0.057) TCGA-DD-AACZ-01 19 49001083 49001083 G A LMTK3 Silent p.N1110N 0.48 TCGA-DD-AACZ-01 19 55995139 55995139 A C ZNF628 Missense_Mutation p.Q860P 0.51 tolerated(0.06) unknown(0) TCGA-DD-AACZ-01 1 115527442 115527442 T A SYCP1 Missense_Mutation p.F886I 0.18 tolerated(0.14) possibly_damaging(0.791) TCGA-DD-AACZ-01 1 116380919 116380919 G A NHLH2 Silent p.G25G 0.31 TCGA-DD-AACZ-01 1 1565914 1565914 G A MIB2 3'UTR 0.08 TCGA-DD-AACZ-01 1 158435707 158435707 G T OR10K1 Missense_Mutation p.G119V 0.18 deleterious(0) probably_damaging(1) TCGA-DD-AACZ-01 1 17303683 17303683 C A MFAP2 Silent p.L16L 0.42 TCGA-DD-AACZ-01 1 19950009 19950009 G T MINOS1 Nonsense_Mutation p.G52* 0.21 TCGA-DD-AACZ-01 1 214557127 214557127 G T PTPN14 Missense_Mutation p.Q691K 0.21 tolerated(0.59) benign(0.002) TCGA-DD-AACZ-01 1 216741353 216741353 A T ESRRG Missense_Mutation p.L231Q 0.08 tolerated(0.23) possibly_damaging(0.735) TCGA-DD-AACZ-01 1 22837792 22837792 A T ZBTB40 Nonsense_Mutation p.K652* 0.20 TCGA-DD-AACZ-01 1 247016483 247016483 T A AHCTF1 Missense_Mutation p.E1500D 0.12 tolerated(0.19) benign(0.111) TCGA-DD-AACZ-01 1 248525837 248525837 C A OR2T4 Missense_Mutation p.P319T 0.09 deleterious(0.02) possibly_damaging(0.725) TCGA-DD-AACZ-01 1 25229122 25229122 G T RUNX3 Missense_Mutation p.Q261K 0.37 tolerated(0.09) benign(0.026) TCGA-DD-AACZ-01 1 25229123 25229123 G T RUNX3 Silent p.R260R 0.37 TCGA-DD-AACZ-01 1 55609866 55609866 T A USP24 Missense_Mutation p.L791F 0.36 tolerated(0.07) possibly_damaging(0.732) TCGA-DD-AACZ-01 1 62734068 62734068 T A KANK4 Nonsense_Mutation p.K708* 0.38 TCGA-DD-AACZ-01 1 91784922 91784922 T C HFM1 Missense_Mutation p.I870V 0.23 deleterious(0.03) possibly_damaging(0.506) TCGA-DD-AACZ-01 20 2413197 2413197 A C TGM6 Missense_Mutation p.S677R 0.21 deleterious(0) probably_damaging(0.992) TCGA-DD-AACZ-01 20 31996123 31996123 G T SNTA1 3'UTR 0.33 TCGA-DD-AACZ-01 20 44533489 44533489 C T PLTP Missense_Mutation p.D298N 0.37 tolerated(0.09) benign(0.365) TCGA-DD-AACZ-01 20 60989520 60989520 A T RBBP8NL Missense_Mutation p.L296Q 0.33 deleterious(0) probably_damaging(0.979) TCGA-DD-AACZ-01 21 46321441 46321441 C A ITGB2 Missense_Mutation p.G236V 0.48 deleterious(0) probably_damaging(0.99) TCGA-DD-AACZ-01 21 47614405 47614405 C T LSS Missense_Mutation p.R663Q 0.44 tolerated(0.31) possibly_damaging(0.571) TCGA-DD-AACZ-01 22 36684295 36684295 T C MYH9 Intron 0.33 TCGA-DD-AACZ-01 22 36863964 36863964 C G TXN2 Missense_Mutation p.V130L 0.69 deleterious(0) possibly_damaging(0.859) TCGA-DD-AACZ-01 22 38328562 38328562 C G MICALL1 Silent p.V673V 0.49 TCGA-DD-AACZ-01 22 41488968 41488968 G A EP300 5'UTR 0.51 TCGA-DD-AACZ-01 2 119739022 119739022 G T MARCO Silent p.G268G 0.20 TCGA-DD-AACZ-01 2 170751740 170751740 A G UBR3 Silent p.L385L 0.23 TCGA-DD-AACZ-01 2 175094100 175094100 C A OLA1 Nonsense_Mutation p.E61* 0.33 TCGA-DD-AACZ-01 2 179438250 179438250 A T TTN Nonsense_Mutation p.Y24203* 0.21 TCGA-DD-AACZ-01 2 179502130 179502130 C A TTN Missense_Mutation p.K13631N 0.14 TCGA-DD-AACZ-01 2 201761875 201761875 G C NIF3L1 Missense_Mutation p.R268P 0.29 deleterious(0) probably_damaging(0.984) TCGA-DD-AACZ-01 2 209185030 209185030 T G PIKFYVE Missense_Mutation p.Y713D 0.07 deleterious(0) probably_damaging(0.997) TCGA-DD-AACZ-01 2 211300146 211300146 C T LANCL1 Missense_Mutation p.C363Y 0.27 deleterious(0.03) probably_damaging(1) TCGA-DD-AACZ-01 2 219143250 219143250 C T TMBIM1 Missense_Mutation p.C154Y 0.32 deleterious(0) possibly_damaging(0.883) TCGA-DD-AACZ-01 2 25505281 25505281 A G DNMT3A Intron 0.11 TCGA-DD-AACZ-01 2 43924355 43924355 C T PLEKHH2 Missense_Mutation p.S183L 0.08 tolerated(0.3) benign(0.001) TCGA-DD-AACZ-01 2 70910836 70910836 G A ADD2 Missense_Mutation p.R338W 0.26 deleterious(0) probably_damaging(0.987) TCGA-DD-AACZ-01 2 71795093 71795093 A T DYSF Nonsense_Mutation p.K860* 0.21 TCGA-DD-AACZ-01 2 96949333 96949333 T G SNRNP200 Missense_Mutation p.Q1568P 0.32 deleterious(0) probably_damaging(0.934) TCGA-DD-AACZ-01 2 97368053 97368053 C T LMAN2L 3'Flank 0.25 TCGA-DD-AACZ-01 3 111962868 111962868 A C SLC9C1 Missense_Mutation p.I418S 0.29 deleterious(0) possibly_damaging(0.609) TCGA-DD-AACZ-01 3 130424491 130424491 T A PIK3R4 Missense_Mutation p.Q949L 0.39 tolerated(0.65) benign(0.283) TCGA-DD-AACZ-01 3 130893720 130893720 T A NEK11 Intron 0.16 TCGA-DD-AACZ-01 3 152132806 152132806 G A MBNL1 Missense_Mutation p.R84H 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-DD-AACZ-01 3 15373984 15373984 T A SH3BP5 5'UTR 0.21 TCGA-DD-AACZ-01 3 193081052 193081052 G C ATP13A5 Missense_Mutation p.N119K 0.27 tolerated(0.1) probably_damaging(0.975) TCGA-DD-AACZ-01 3 36898772 36898772 T A TRANK1 Missense_Mutation p.Q770L 0.16 tolerated(0.37) benign(0.001) TCGA-DD-AACZ-01 3 48672878 48672878 G A SLC26A6 5'Flank 0.44 TCGA-DD-AACZ-01 3 54157508 54157508 T A CACNA2D3 Intron 0.17 TCGA-DD-AACZ-01 3 57261773 57261773 C A APPL1 5'UTR 0.20 TCGA-DD-AACZ-01 3 74385774 74385774 G A CNTN3 Missense_Mutation p.A467V 0.29 tolerated(0.54) benign(0.007) TCGA-DD-AACZ-01 4 109765684 109765684 A T COL25A1 Silent p.P540P 0.17 TCGA-DD-AACZ-01 4 114158756 114158756 T C ANK2 Missense_Mutation p.M224T 0.22 benign(0.381) TCGA-DD-AACZ-01 4 16025980 16025980 T A PROM1 Missense_Mutation p.Q211L 0.40 deleterious(0) possibly_damaging(0.582) TCGA-DD-AACZ-01 4 162680644 162680644 A G FSTL5 Missense_Mutation p.C216R 0.21 deleterious(0) probably_damaging(0.982) TCGA-DD-AACZ-01 4 170613454 170613454 G A CLCN3 Missense_Mutation p.E307K 0.24 deleterious(0.01) benign(0.36) TCGA-DD-AACZ-01 4 25667799 25667799 T A SLC34A2 Silent p.P143P 0.17 TCGA-DD-AACZ-01 4 25819867 25819867 C T SEL1L3 Missense_Mutation p.R486H 0.23 tolerated(0.52) benign(0) TCGA-DD-AACZ-01 4 48996766 48996766 A G CWH43 Silent p.G214G 0.22 TCGA-DD-AACZ-01 4 71655272 71655272 A T RUFY3 Missense_Mutation p.N434Y 0.20 deleterious(0.04) probably_damaging(0.982) TCGA-DD-AACZ-01 5 128887588 128887588 T C ADAMTS19 Missense_Mutation p.C448R 0.48 deleterious(0) probably_damaging(1) TCGA-DD-AACZ-01 5 137527198 137527198 T C CDC23 Silent p.G463G 0.48 TCGA-DD-AACZ-01 5 140559603 140559603 T A PCDHB8 Missense_Mutation p.L663Q 0.51 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-DD-AACZ-01 5 140810730 140810730 A T PCDHGA12 Missense_Mutation p.E135V 0.54 tolerated_low_confidence(0.35) benign(0.013) TCGA-DD-AACZ-01 5 149360924 149360924 A T SLC26A2 Missense_Mutation p.I590L 0.52 deleterious(0.02) benign(0.099) TCGA-DD-AACZ-01 5 154242880 154242880 A C CNOT8 Missense_Mutation p.E14D 0.06 tolerated(0.65) benign(0.003) TCGA-DD-AACZ-01 5 156184773 156184773 C A SGCD Intron 0.10 TCGA-DD-AACZ-01 5 157065283 157065283 A G SOX30 Missense_Mutation p.F612S 0.12 deleterious(0) probably_damaging(0.987) TCGA-DD-AACZ-01 5 16617067 16617067 G T FAM134B Missense_Mutation p.A5E 0.26 deleterious_low_confidence(0) unknown(0) TCGA-DD-AACZ-01 5 17276070 17276070 C A BASP1 3'UTR 0.30 TCGA-DD-AACZ-01 5 41870381 41870381 A G OXCT1 Splice_Site p.X26_splice 0.29 TCGA-DD-AACZ-01 5 52371063 52371063 A G ITGA2 Silent p.E918E 0.21 TCGA-DD-AACZ-01 5 66391425 66391425 G T MAST4 Missense_Mutation p.R278S 0.31 benign(0.358) TCGA-DD-AACZ-01 5 70308629 70308629 T A NAIP Silent p.L38L 0.16 TCGA-DD-AACZ-01 5 7520950 7520950 A G ADCY2 Missense_Mutation p.T170A 0.10 tolerated(0.08) benign(0.017) TCGA-DD-AACZ-01 5 94994511 94994511 G A SPATA9 Missense_Mutation p.S194F 0.32 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-DD-AACZ-01 6 117609803 117609803 G C ROS1 Missense_Mutation p.S2299C 0.39 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-DD-AACZ-01 6 131958470 131958470 A G ENPP3 5'UTR 0.21 TCGA-DD-AACZ-01 6 132859536 132859536 C T TAAR9 Silent p.Y36Y 0.14 TCGA-DD-AACZ-01 6 157505501 157505501 A T ARID1B Missense_Mutation p.E1161V 0.19 probably_damaging(0.988) TCGA-DD-AACZ-01 6 1612686 1612686 T A FOXC1 3'UTR 0.16 TCGA-DD-AACZ-01 6 166571738 166571738 T C T 3'UTR 0.28 TCGA-DD-AACZ-01 6 168465694 168465694 G A FRMD1 Missense_Mutation p.R169C 0.12 deleterious(0) probably_damaging(0.987) TCGA-DD-AACZ-01 6 27368626 27368626 C T ZNF391 Silent p.H159H 0.40 TCGA-DD-AACZ-01 6 30314488 30314488 A T RPP21 Splice_Site p.X131_splice 0.38 TCGA-DD-AACZ-01 6 32180406 32180406 T A NOTCH4 Splice_Site p.X843_splice 0.16 TCGA-DD-AACZ-01 6 32261572 32261572 T A C6orf10 Missense_Mutation p.K293M 0.33 deleterious(0) probably_damaging(0.996) TCGA-DD-AACZ-01 6 33133539 33133539 G A COL11A2 Missense_Mutation p.R1427W 0.22 unknown(0) TCGA-DD-AACZ-01 6 33239727 33239727 G A VPS52 5'Flank 0.35 TCGA-DD-AACZ-01 6 49518524 49518524 A T C6orf141 Missense_Mutation p.R7W 0.23 deleterious(0.03) possibly_damaging(0.892) TCGA-DD-AACZ-01 6 87994409 87994409 G A GJB7 Silent p.V74V 0.27 TCGA-DD-AACZ-01 7 131872243 131872243 A T PLXNA4 Missense_Mutation p.C994S 0.21 deleterious(0.03) benign(0.268) TCGA-DD-AACZ-01 7 148709035 148709035 C A PDIA4 Missense_Mutation p.K294N 0.08 deleterious(0.01) probably_damaging(0.991) TCGA-DD-AACZ-01 7 150698381 150698381 G T NOS3 Missense_Mutation p.E432D 0.24 tolerated(0.08) probably_damaging(0.99) TCGA-DD-AACZ-01 7 155094075 155094075 G A INSIG1 Missense_Mutation p.A218T 0.35 deleterious(0) probably_damaging(1) TCGA-DD-AACZ-01 7 19156809 19156809 C T TWIST1 Missense_Mutation p.A46T 0.17 tolerated_low_confidence(0.59) unknown(0) TCGA-DD-AACZ-01 7 2748314 2748314 T A AMZ1 Missense_Mutation p.W189R 0.37 deleterious(0) probably_damaging(0.91) TCGA-DD-AACZ-01 7 2834735 2834735 G C GNA12 Missense_Mutation p.P118A 0.38 tolerated(0.08) benign(0.039) TCGA-DD-AACZ-01 7 2946324 2946324 T A CARD11 Missense_Mutation p.K1138M 0.34 deleterious(0.01) possibly_damaging(0.757) TCGA-DD-AACZ-01 7 34118743 34118743 G A BMPER Silent p.A451A 0.41 TCGA-DD-AACZ-01 7 39379608 39379608 T A POU6F2 Silent p.P293P 0.41 TCGA-DD-AACZ-01 7 44180916 44180916 A T MYL7 5'UTR 0.41 TCGA-DD-AACZ-01 7 73442595 73442595 T A ELN Silent p.P26P 0.24 TCGA-DD-AACZ-01 7 81355282 81355282 C G HGF Missense_Mutation p.W364C 0.10 deleterious(0) probably_damaging(1) TCGA-DD-AACZ-01 7 82580060 82580060 T A PCLO Missense_Mutation p.R3282W 0.13 unknown(0) TCGA-DD-AACZ-01 7 82585634 82585634 G T PCLO Missense_Mutation p.D1545E 0.11 unknown(0) TCGA-DD-AACZ-01 7 82997259 82997259 T C SEMA3E Silent p.V657V 0.19 TCGA-DD-AACZ-01 7 99096398 99096398 G A ZNF394 Missense_Mutation p.A175V 0.25 tolerated(0.27) benign(0.304) TCGA-DD-AACZ-01 8 102570707 102570707 A T GRHL2 Missense_Mutation p.Q115H 0.12 tolerated(0.24) benign(0.179) TCGA-DD-AACZ-01 8 106331209 106331209 C T ZFPM2 Missense_Mutation p.R14W 0.22 deleterious(0) benign(0.129) TCGA-DD-AACZ-01 8 116616720 116616720 A G TRPS1 Silent p.S492S 0.09 TCGA-DD-AACZ-01 8 116631492 116631492 A T TRPS1 Nonsense_Mutation p.L278* 0.09 TCGA-DD-AACZ-01 8 144893456 144893456 G T SCRIB Missense_Mutation p.N322K 0.18 probably_damaging(0.999) TCGA-DD-AACZ-01 8 145698549 145698549 T C KIFC2 Missense_Mutation p.S745P 0.07 tolerated_low_confidence(0.15) benign(0.043) TCGA-DD-AACZ-01 8 2000383 2000383 C T MYOM2 Missense_Mutation p.A72V 0.06 tolerated(0.15) benign(0.23) TCGA-DD-AACZ-01 8 22137035 22137035 G A PIWIL2 Missense_Mutation p.G46S 0.20 tolerated_low_confidence(0.27) benign(0.169) TCGA-DD-AACZ-01 8 28627515 28627515 C T INTS9 Missense_Mutation p.S564N 0.19 tolerated(0.51) benign(0.013) TCGA-DD-AACZ-01 8 73849796 73849796 C T KCNB2 Missense_Mutation p.P736S 0.08 deleterious_low_confidence(0.02) benign(0.297) TCGA-DD-AACZ-01 8 82359627 82359627 T A PMP2 5'UTR 0.15 TCGA-DD-AACZ-01 8 82606852 82606852 T A SLC10A5 Missense_Mutation p.K119M 0.14 tolerated(0.08) benign(0.07) TCGA-DD-AACZ-01 9 108145486 108145486 T A SLC44A1 Missense_Mutation p.L572Q 0.14 deleterious(0) probably_damaging(1) TCGA-DD-AACZ-01 9 124535752 124535752 A T DAB2IP Missense_Mutation p.K954M 0.21 deleterious(0) probably_damaging(0.969) TCGA-DD-AACZ-01 9 138391730 138391730 T G C9orf116 5'Flank 0.08 TCGA-DD-AACZ-01 9 140083520 140083520 A G SSNA1 Missense_Mutation p.I19V 0.15 deleterious(0.05) benign(0.06) TCGA-DD-AACZ-01 9 15472658 15472658 T G PSIP1 Missense_Mutation p.K317Q 0.55 tolerated(0.12) probably_damaging(0.991) TCGA-DD-AACZ-01 9 19371560 19371560 T C DENND4C Intron 0.23 TCGA-DD-AACZ-01 9 20622332 20622332 G A MLLT3 5'UTR 0.31 TCGA-DD-AACZ-01 9 27109459 27109459 T C TEK 5'UTR 0.15 TCGA-DD-AACZ-01 9 33948600 33948600 T G UBAP2 Intron 0.50 TCGA-DD-AACZ-01 9 72938409 72938409 A T SMC5 Missense_Mutation p.M721L 0.20 tolerated(0.79) benign(0.015) TCGA-DD-AACZ-01 9 79320430 79320430 T A PRUNE2 Missense_Mutation p.S2254C 0.25 deleterious(0.02) benign(0.428) TCGA-DD-AACZ-01 9 82324551 82324551 C G TLE4 Missense_Mutation p.P426R 0.27 deleterious(0) probably_damaging(0.91) TCGA-DD-AACZ-01 9 90535925 90535925 C G SPATA31C1 RNA 0.28 TCGA-DD-AACZ-01 X 125686535 125686535 G A DCAF12L1 Silent p.D19D 0.41 TCGA-DD-AACZ-01 X 129205014 129205014 C G ELF4 Splice_Site p.X270_splice 0.16 TCGA-DD-AACZ-01 X 13587870 13587870 C A EGFL6 5'UTR 0.37 TCGA-DD-AACZ-01 X 14915270 14915270 A T MOSPD2 Silent p.I129I 0.46 TCGA-DD-AACZ-01 X 32716095 32716095 C A DMD Missense_Mutation p.Q284H 0.26 possibly_damaging(0.763) TCGA-DD-AAD0-01 10 18840757 18840757 T A NSUN6 Missense_Mutation p.T356S 0.46 tolerated(0.86) benign(0.002) TCGA-DD-AAD0-01 10 51028243 51028243 T C PARG Missense_Mutation p.H430R 0.48 deleterious(0.01) probably_damaging(0.99) TCGA-DD-AAD0-01 10 61005248 61005248 G C PHYHIPL Missense_Mutation p.G343A 0.95 deleterious(0.03) probably_damaging(0.999) TCGA-DD-AAD0-01 10 81272785 81272785 A C EIF5AL1 Missense_Mutation p.Y127S 0.29 deleterious(0.01) benign(0.169) TCGA-DD-AAD0-01 10 89720875 89720875 G T PTEN Missense_Mutation p.K342N 0.86 deleterious(0.04) benign(0.202) TCGA-DD-AAD0-01 11 12495474 12495474 C T PARVA Nonsense_Mutation p.R121* 0.39 TCGA-DD-AAD0-01 11 431763 431763 T C ANO9 Missense_Mutation p.E157G 0.07 deleterious(0.04) possibly_damaging(0.632) TCGA-DD-AAD0-01 11 55563231 55563231 A C OR5D14 Missense_Mutation p.H67P 0.52 deleterious(0) probably_damaging(0.954) TCGA-DD-AAD0-01 11 60107402 60107402 G C MS4A6E Missense_Mutation p.V140L 0.44 tolerated(0.1) possibly_damaging(0.605) TCGA-DD-AAD0-01 11 6503054 6503054 T C TIMM10B Missense_Mutation p.L36S 0.49 deleterious(0) probably_damaging(0.996) TCGA-DD-AAD0-01 11 65810480 65810480 G A GAL3ST3 Missense_Mutation p.A265V 0.50 tolerated(0.4) benign(0.008) TCGA-DD-AAD0-01 11 6632187 6632187 C A TAF10 Missense_Mutation p.G208V 0.49 deleterious(0) probably_damaging(0.998) TCGA-DD-AAD0-01 11 66456306 66456306 C A SPTBN2 Missense_Mutation p.V2017L 0.28 deleterious(0.03) benign(0.011) TCGA-DD-AAD0-01 11 84996347 84996347 C G DLG2 Missense_Mutation p.E35Q 0.45 tolerated_low_confidence(0.52) benign(0.003) TCGA-DD-AAD0-01 11 94282476 94282476 A G FUT4 3'UTR 0.52 TCGA-DD-AAD0-01 12 113737432 113737432 C G SLC8B1 3'UTR 0.41 TCGA-DD-AAD0-01 12 2613673 2613673 C T CACNA1C Intron 0.39 TCGA-DD-AAD0-01 12 53585196 53585197 CT - ITGB7 3'UTR 0.38 TCGA-DD-AAD0-01 12 80746079 80746079 C A OTOGL Nonsense_Mutation p.S1748* 0.59 TCGA-DD-AAD0-01 12 91552214 91552214 G A DCN Nonsense_Mutation p.R133* 0.35 TCGA-DD-AAD0-01 13 20025335 20025335 G A TPTE2 Nonsense_Mutation p.R258* 0.05 TCGA-DD-AAD0-01 13 39435611 39435611 G C FREM2 Silent p.P2521P 0.50 TCGA-DD-AAD0-01 13 50092193 50092193 T A PHF11 Missense_Mutation p.C122S 0.45 deleterious(0) probably_damaging(0.999) TCGA-DD-AAD0-01 13 99947771 99947771 A G GPR183 Missense_Mutation p.I210T 0.04 tolerated(0.09) benign(0.002) TCGA-DD-AAD0-01 14 23512092 23512092 G A PSMB11 Missense_Mutation p.G220R 0.46 deleterious(0) probably_damaging(1) TCGA-DD-AAD0-01 14 23869968 23869968 G A MYH6 Missense_Mutation p.R454C 0.48 deleterious(0) probably_damaging(0.985) TCGA-DD-AAD0-01 14 24530143 24530143 C G LRRC16B Missense_Mutation p.P733R 0.56 deleterious(0.04) probably_damaging(0.999) TCGA-DD-AAD0-01 14 64653174 64653174 G A SYNE2 Silent p.Q5863Q 0.41 TCGA-DD-AAD0-01 14 68042127 68042127 A C PLEKHH1 Missense_Mutation p.K703Q 0.45 deleterious(0) probably_damaging(0.986) TCGA-DD-AAD0-01 14 74876360 74876360 G C SYNDIG1L Missense_Mutation p.P30A 0.49 tolerated(0.1) benign(0.002) TCGA-DD-AAD0-01 15 23932089 23932089 C A NDN Silent p.P92P 0.58 TCGA-DD-AAD0-01 15 27114328 27114328 G C GABRA5 5'UTR 0.38 TCGA-DD-AAD0-01 15 41657598 41657598 A T NUSAP1 Splice_Site p.X221_splice 0.45 TCGA-DD-AAD0-01 15 77236169 77236169 A G RCN2 Missense_Mutation p.E173G 0.48 deleterious(0) probably_damaging(0.999) TCGA-DD-AAD0-01 15 88476268 88476268 G T NTRK3 Missense_Mutation p.H622N 0.36 tolerated(0.08) possibly_damaging(0.557) TCGA-DD-AAD0-01 16 25189482 25189482 G A LCMT1 3'UTR 0.48 TCGA-DD-AAD0-01 16 31422694 31422694 G A ITGAD Silent p.G521G 0.50 TCGA-DD-AAD0-01 16 47117044 47117044 G T NETO2 3'UTR 0.38 TCGA-DD-AAD0-01 16 58579334 58579334 C A CNOT1 Missense_Mutation p.Q1356H 0.56 tolerated(0.25) possibly_damaging(0.719) TCGA-DD-AAD0-01 16 601629 601629 G C CAPN15 Missense_Mutation p.E770D 0.59 tolerated(0.21) possibly_damaging(0.524) TCGA-DD-AAD0-01 16 66949 66949 C A WASH4P Missense_Mutation p.L229F 0.21 tolerated(0.22) possibly_damaging(0.451) TCGA-DD-AAD0-01 16 67580287 67580287 C T FAM65A Missense_Mutation p.A1214V 0.07 deleterious(0) possibly_damaging(0.787) TCGA-DD-AAD0-01 16 71604715 71604715 T C TAT Missense_Mutation p.Y260C 0.45 deleterious(0.03) benign(0.014) TCGA-DD-AAD0-01 17 34192249 34192249 T A C17orf66 Missense_Mutation p.K97M 0.45 deleterious(0) probably_damaging(0.935) TCGA-DD-AAD0-01 17 39191019 39191019 T C KRTAP1-3 Missense_Mutation p.T19A 0.73 tolerated(0.06) unknown(0) TCGA-DD-AAD0-01 17 41898313 41898313 G A MPP3 Silent p.D266D 0.27 TCGA-DD-AAD0-01 17 42144008 42144008 C T LSM12 5'UTR 0.23 TCGA-DD-AAD0-01 17 77921567 77921567 G A TBC1D16 Silent p.D535D 0.38 TCGA-DD-AAD0-01 18 74153982 74153982 C A ZNF516 Silent p.L343L 0.36 TCGA-DD-AAD0-01 19 17298768 17298768 C - MYO9B Frame_Shift_Del p.L868Wfs*57 0.38 TCGA-DD-AAD0-01 19 19905517 19905544 TCCAGTATGAATTATCTTATGTTCAGTT - ZNF506 Frame_Shift_Del p.T385Rfs*33 0.47 TCGA-DD-AAD0-01 19 20044590 20044590 A T ZNF93 Nonsense_Mutation p.K276* 0.53 TCGA-DD-AAD0-01 19 36207625 36207625 C A ZBTB32 Missense_Mutation p.P479T 0.39 deleterious_low_confidence(0.01) unknown(0) TCGA-DD-AAD0-01 19 36213570 36213570 C G KMT2B Missense_Mutation p.P891R 0.51 probably_damaging(0.987) TCGA-DD-AAD0-01 19 36219050 36219050 C T KMT2B Nonsense_Mutation p.R1517* 0.44 TCGA-DD-AAD0-01 19 48204913 48204913 C T GLTSCR1 Silent p.L1308L 0.51 TCGA-DD-AAD0-01 19 4896768 4896768 A G ARRDC5 Missense_Mutation p.M139T 0.49 tolerated(0.39) benign(0.124) TCGA-DD-AAD0-01 19 53432594 53432594 C T ZNF321P Silent p.G88G 0.32 TCGA-DD-AAD0-01 19 57175001 57175001 A G ZNF835 Silent p.C522C 0.37 TCGA-DD-AAD0-01 19 9488995 9488995 C A ZNF177 Missense_Mutation p.A3E 0.45 deleterious(0.05) possibly_damaging(0.714) TCGA-DD-AAD0-01 1 154318730 154318730 G A ATP8B2 Missense_Mutation p.M967I 0.26 tolerated(0.18) benign(0.034) TCGA-DD-AAD0-01 1 156261286 156261286 T C TMEM79 Missense_Mutation p.F361S 0.27 deleterious(0) probably_damaging(0.999) TCGA-DD-AAD0-01 1 156261289 156261289 T C TMEM79 Missense_Mutation p.V362A 0.26 tolerated(0.07) benign(0.005) TCGA-DD-AAD0-01 1 160309715 160309715 T C COPA Missense_Mutation p.D71G 0.59 deleterious(0) probably_damaging(0.998) TCGA-DD-AAD0-01 1 161011957 161011957 A C USF1 Silent p.T75T 0.32 TCGA-DD-AAD0-01 1 162312352 162312352 A T NOS1AP Intron 0.31 TCGA-DD-AAD0-01 1 169799444 169799444 C A C1orf112 Silent p.T453T 0.40 TCGA-DD-AAD0-01 1 207785177 207785177 C T CR1 Missense_Mutation p.P2151S 0.66 tolerated(0.12) probably_damaging(0.976) TCGA-DD-AAD0-01 1 209785166 209785166 C A CAMK1G Missense_Mutation p.H315Q 0.33 tolerated(0.09) benign(0.1) TCGA-DD-AAD0-01 1 211486101 211486105 ATGTA - RCOR3 Frame_Shift_Del p.V373Wfs*20 0.31 TCGA-DD-AAD0-01 1 224340935 224340935 T G FBXO28 Missense_Mutation p.I203R 0.34 deleterious(0) possibly_damaging(0.758) TCGA-DD-AAD0-01 1 228548151 228548151 G T OBSCN Intron 0.31 TCGA-DD-AAD0-01 1 228871685 228871685 G A RHOU Missense_Mutation p.V66M 0.33 deleterious(0.01) possibly_damaging(0.847) TCGA-DD-AAD0-01 1 247320147 247320147 T C ZNF124 Silent p.E197E 0.27 TCGA-DD-AAD0-01 1 980903 980903 C A AGRN Missense_Mutation p.P846T 0.96 deleterious(0.05) possibly_damaging(0.768) TCGA-DD-AAD0-01 21 31587841 31587841 T G CLDN8 Missense_Mutation p.I135L 0.45 deleterious(0) benign(0.33) TCGA-DD-AAD0-01 21 36193995 36193995 T A RUNX1 Intron 0.45 TCGA-DD-AAD0-01 22 25251281 25251281 A G SGSM1 Missense_Mutation p.M185V 0.41 tolerated(0.17) benign(0.123) TCGA-DD-AAD0-01 22 50719562 50719562 C A PLXNB2 Missense_Mutation p.G1240V 0.45 tolerated(0.06) probably_damaging(0.994) TCGA-DD-AAD0-01 2 112839010 112839010 G A TMEM87B Nonsense_Mutation p.W251* 0.50 TCGA-DD-AAD0-01 2 113089743 113089743 G T ZC3H6 Missense_Mutation p.S1083I 0.49 deleterious(0.02) possibly_damaging(0.723) TCGA-DD-AAD0-01 2 11751071 11751071 C T GREB1 Missense_Mutation p.A975V 0.41 deleterious(0) possibly_damaging(0.508) TCGA-DD-AAD0-01 2 160257109 160257109 C A BAZ2B Splice_Site p.X966_splice 0.48 TCGA-DD-AAD0-01 2 168727097 168727097 T G B3GALT1 3'UTR 0.53 TCGA-DD-AAD0-01 2 179582535 179582535 G A TTN Missense_Mutation p.R8356C 0.47 TCGA-DD-AAD0-01 2 215876718 215876718 G T ABCA12 Missense_Mutation p.P700T 0.51 tolerated(0.58) benign(0.003) TCGA-DD-AAD0-01 2 224462698 224462698 C A SCG2 Missense_Mutation p.D435Y 0.50 deleterious(0) probably_damaging(0.993) TCGA-DD-AAD0-01 2 231042313 231042313 C T SP110 Missense_Mutation p.A511T 0.36 tolerated(0.25) possibly_damaging(0.695) TCGA-DD-AAD0-01 2 43460007 43460007 G T THADA Missense_Mutation p.Q1771K 0.44 tolerated(0.94) benign(0.027) TCGA-DD-AAD0-01 2 55459745 55459745 G T RPS27A 5'UTR 0.32 TCGA-DD-AAD0-01 2 73195626 73195626 G A SFXN5 Missense_Mutation p.P260S 0.45 tolerated(0.12) probably_damaging(0.997) TCGA-DD-AAD0-01 2 73479792 73479792 A T CCT7 Missense_Mutation p.I479F 0.39 tolerated(0.26) benign(0.407) TCGA-DD-AAD0-01 2 80816543 80816543 G T CTNNA2 Missense_Mutation p.G708C 0.42 deleterious(0) probably_damaging(0.988) TCGA-DD-AAD0-01 2 80816544 80816544 G T CTNNA2 Missense_Mutation p.G708V 0.42 deleterious(0) probably_damaging(0.94) TCGA-DD-AAD0-01 2 9017206 9017206 T A MBOAT2 Missense_Mutation p.N215I 0.49 deleterious(0) benign(0.353) TCGA-DD-AAD0-01 2 9017208 9017208 T G MBOAT2 Missense_Mutation p.E214D 0.51 tolerated(0.62) benign(0.005) TCGA-DD-AAD0-01 3 10301858 10301858 C G TATDN2 Missense_Mutation p.S151C 0.48 tolerated(0.09) probably_damaging(0.99) TCGA-DD-AAD0-01 3 111901012 111901012 C A SLC9C1 Missense_Mutation p.D873Y 0.44 deleterious(0) possibly_damaging(0.708) TCGA-DD-AAD0-01 3 149205519 149205519 A G TM4SF4 Silent p.T126T 0.43 TCGA-DD-AAD0-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.43 tolerated(0.44) benign(0.085) TCGA-DD-AAD0-01 3 178968889 178968889 C T KCNMB3 Translation_Start_Site p.M1? 0.41 deleterious_low_confidence(0) benign(0.107) TCGA-DD-AAD0-01 3 39159608 39159608 C T TTC21A Silent p.T255T 0.48 TCGA-DD-AAD0-01 3 41266113 41266113 C A CTNNB1 Missense_Mutation p.S37Y 0.47 deleterious(0) probably_damaging(0.986) TCGA-DD-AAD0-01 3 46871983 46871983 C T PRSS42 Missense_Mutation p.G265R 0.46 deleterious(0) probably_damaging(1) TCGA-DD-AAD0-01 3 47161670 47161670 A C SETD2 Splice_Site p.X1485_splice 0.56 TCGA-DD-AAD0-01 3 49755432 49755432 G T AMIGO3 Silent p.G489G 0.14 TCGA-DD-AAD0-01 3 5022091 5022091 A C BHLHE40 Missense_Mutation p.T86P 0.46 deleterious(0) benign(0.155) TCGA-DD-AAD0-01 3 50336718 50336718 G A NAT6 5'UTR 0.57 TCGA-DD-AAD0-01 3 57902849 57902849 A G SLMAP Intron 0.45 TCGA-DD-AAD0-01 4 134072506 134072506 G T PCDH10 Missense_Mutation p.R404L 0.45 deleterious(0.01) possibly_damaging(0.64) TCGA-DD-AAD0-01 4 147724829 147724829 G A TTC29 Silent p.Y370Y 0.45 TCGA-DD-AAD0-01 4 25930802 25930802 G - SMIM20 Frame_Shift_Del p.G65Afs*12 0.28 TCGA-DD-AAD0-01 4 4861477 4861477 C T MSX1 5'UTR 0.49 TCGA-DD-AAD0-01 4 69362668 69362668 T G TMPRSS11E 3'UTR 0.41 TCGA-DD-AAD0-01 4 7056326 7056326 G T TADA2B Nonsense_Mutation p.E270* 0.43 TCGA-DD-AAD0-01 5 114469810 114469810 G A TRIM36 Silent p.S427S 0.40 TCGA-DD-AAD0-01 5 138713935 138713935 C G SLC23A1 Missense_Mutation p.G433R 0.41 deleterious(0.01) probably_damaging(0.994) TCGA-DD-AAD0-01 5 167919732 167919732 C G RARS Silent p.V83V 0.55 TCGA-DD-AAD0-01 5 36971138 36971138 C T NIPBL Silent p.D257D 0.42 TCGA-DD-AAD0-01 5 5461382 5461382 C T KIAA0947 Silent p.P645P 0.48 TCGA-DD-AAD0-01 6 170181592 170181592 A G ERMARD Missense_Mutation p.S674G 0.94 deleterious(0.02) benign(0.118) TCGA-DD-AAD0-01 6 25108883 25108883 C - CMAHP RNA 0.30 TCGA-DD-AAD0-01 6 31730369 31730369 G T MSH5 3'UTR 0.07 TCGA-DD-AAD0-01 6 32007589 32007589 G T CYP21A2 Nonsense_Mutation p.E239* 0.42 TCGA-DD-AAD0-01 6 33423555 33423555 G - ZBTB9 Frame_Shift_Del p.S228Qfs*28 0.27 TCGA-DD-AAD0-01 6 35207632 35207632 C G SCUBE3 Missense_Mutation p.I311M 0.56 deleterious(0.02) possibly_damaging(0.793) TCGA-DD-AAD0-01 6 47647896 47647896 A G GPR111 Silent p.L187L 0.44 TCGA-DD-AAD0-01 6 52269957 52269957 G T PAQR8 3'UTR 0.60 TCGA-DD-AAD0-01 6 83076149 83076149 A G TPBG 3'UTR 0.58 TCGA-DD-AAD0-01 7 142460403 142460403 C A PRSS1 Silent p.G192G 0.36 TCGA-DD-AAD0-01 7 149483308 149483308 G A SSPO RNA 0.41 TCGA-DD-AAD0-01 7 155595681 155595681 C T SHH Nonsense_Mutation p.W434* 0.49 TCGA-DD-AAD0-01 7 24784273 24784273 C T DFNA5 Silent p.G104G 0.34 TCGA-DD-AAD0-01 7 32110126 32110126 C T PDE1C Intron 0.40 TCGA-DD-AAD0-01 7 4998686 4998686 G A MMD2 5'UTR 0.32 TCGA-DD-AAD0-01 8 145772918 145772918 C G ARHGAP39 Missense_Mutation p.V518L 0.31 tolerated(0.29) benign(0.001) TCGA-DD-AAD0-01 8 41577243 41577243 C T ANK1 Missense_Mutation p.C381Y 0.46 deleterious(0.02) probably_damaging(0.967) TCGA-DD-AAD0-01 8 55539105 55539105 C G RP1 Missense_Mutation p.A888G 0.48 tolerated(0.39) benign(0.003) TCGA-DD-AAD0-01 9 132662721 132662721 C T FNBP1 Missense_Mutation p.A512T 0.55 tolerated(0.24) possibly_damaging(0.509) TCGA-DD-AAD0-01 9 137804337 137804337 G C FCN1 Missense_Mutation p.A198G 0.62 deleterious(0.01) benign(0.003) TCGA-DD-AAD0-01 9 139694929 139694929 T A CCDC183 Missense_Mutation p.L176Q 0.46 tolerated(0.24) probably_damaging(0.995) TCGA-DD-AAD0-01 9 140176526 140176526 C T TOR4A 3'UTR 0.41 TCGA-DD-AAD0-01 9 71629038 71629039 - GCGGCG PRKACG 5'UTR 0.27 TCGA-DD-AAD0-01 9 72131502 72131502 C T APBA1 Missense_Mutation p.A209T 0.45 tolerated_low_confidence(0.4) benign(0.002) TCGA-DD-AAD0-01 X 100871397 100871397 C T ARMCX6 Missense_Mutation p.D72N 0.40 tolerated(0.24) benign(0.019) TCGA-DD-AAD0-01 X 107821329 107821329 C T COL4A5 Nonsense_Mutation p.Q223* 0.43 TCGA-DD-AAD0-01 X 108718938 108718938 C T GUCY2F Silent p.A76A 0.46 TCGA-DD-AAD0-01 X 123870898 123870898 G T TENM1 Missense_Mutation p.P229T 0.49 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-DD-AAD0-01 X 154490389 154490389 T A RAB39B Missense_Mutation p.Y114F 0.53 tolerated(0.87) benign(0.002) TCGA-DD-AAD0-01 X 52682011 52682011 G T SSX7 Nonsense_Mutation p.Y31* 0.46 TCGA-DD-AAD0-01 X 53442011 53442011 G A SMC1A Missense_Mutation p.P73S 0.38 deleterious(0) probably_damaging(0.998) TCGA-DD-AAD0-01 X 69424178 69424178 C A DGAT2L6 Missense_Mutation p.S224Y 0.49 deleterious(0) probably_damaging(0.975) TCGA-DD-AAD0-01 X 72783364 72783364 C T CHIC1 Missense_Mutation p.R82W 0.43 deleterious_low_confidence(0.04) possibly_damaging(0.739) TCGA-DD-AAD1-01 10 102766667 102766667 G T LZTS2 Silent p.R584R 0.06 TCGA-DD-AAD1-01 10 115348714 115348714 G A NRAP 3'UTR 0.08 TCGA-DD-AAD1-01 10 16982125 16982125 G T CUBN Silent p.L1818L 0.13 TCGA-DD-AAD1-01 10 64974046 64974046 A C JMJD1C Silent p.L627L 0.22 TCGA-DD-AAD1-01 10 74874164 74874164 T C NUDT13 Missense_Mutation p.F14S 0.10 tolerated(0.4) benign(0.007) TCGA-DD-AAD1-01 10 93999237 93999237 G A CPEB3 Missense_Mutation p.P291S 0.21 deleterious(0.02) possibly_damaging(0.776) TCGA-DD-AAD1-01 10 96484179 96484179 C G CYP2C18 Silent p.P346P 0.18 TCGA-DD-AAD1-01 10 99527515 99527515 C T SFRP5 Missense_Mutation p.R237H 0.20 deleterious(0.01) probably_damaging(0.982) TCGA-DD-AAD1-01 11 103191757 103191757 G T DYNC2H1 Splice_Site p.X3916_splice 0.18 TCGA-DD-AAD1-01 11 103908978 103908978 C A DDI1 3'UTR 0.28 TCGA-DD-AAD1-01 11 118502074 118502074 G A PHLDB1 Missense_Mutation p.A660T 0.20 tolerated(0.44) benign(0.001) TCGA-DD-AAD1-01 11 12237867 12237867 G T MICAL2 Splice_Site p.X316_splice 0.16 TCGA-DD-AAD1-01 11 18503415 18503415 G C TSG101 Missense_Mutation p.A282G 0.16 tolerated(0.35) benign(0.003) TCGA-DD-AAD1-01 11 22359944 22359944 A T SLC17A6 5'UTR 0.37 TCGA-DD-AAD1-01 11 22364853 22364853 G A SLC17A6 Missense_Mutation p.G134S 0.32 deleterious(0.02) probably_damaging(0.981) TCGA-DD-AAD1-01 11 49229860 49229860 G A FOLH1 Silent p.L34L 0.19 TCGA-DD-AAD1-01 11 55944930 55944930 G A OR5J2 Silent p.T279T 0.15 TCGA-DD-AAD1-01 11 57089442 57089442 A T TNKS1BP1 5'UTR 0.07 TCGA-DD-AAD1-01 11 65414112 65414112 T A SIPA1 Missense_Mutation p.L536Q 0.10 deleterious(0) probably_damaging(1) TCGA-DD-AAD1-01 11 6578767 6578767 A G DNHD1 Missense_Mutation p.S2748G 0.10 benign(0.003) TCGA-DD-AAD1-01 11 73555916 73555916 G A MRPL48 Missense_Mutation p.G89E 0.34 deleterious(0.04) possibly_damaging(0.78) TCGA-DD-AAD1-01 12 101381411 101381411 T A ANO4 Missense_Mutation p.C198S 0.25 tolerated(0.24) benign(0.042) TCGA-DD-AAD1-01 12 117681160 117681160 G T NOS1 Missense_Mutation p.S1002R 0.06 deleterious(0.01) probably_damaging(0.979) TCGA-DD-AAD1-01 12 118474281 118474281 A C WSB2 Missense_Mutation p.I232S 0.21 tolerated(0.06) possibly_damaging(0.516) TCGA-DD-AAD1-01 12 26709308 26709308 C G ITPR2 Missense_Mutation p.D1608H 0.13 deleterious(0) probably_damaging(0.926) TCGA-DD-AAD1-01 12 46764378 46764378 T C SLC38A2 Silent p.V77V 0.23 TCGA-DD-AAD1-01 12 50524462 50524462 G A CERS5 Missense_Mutation p.R349C 0.22 deleterious(0) probably_damaging(0.997) TCGA-DD-AAD1-01 12 6438464 6438464 G A TNFRSF1A 3'UTR 0.10 TCGA-DD-AAD1-01 12 6887023 6887023 T G LAG3 Missense_Mutation p.L456R 0.25 deleterious(0.01) probably_damaging(0.945) TCGA-DD-AAD1-01 12 77208983 77208983 A G ZDHHC17 Missense_Mutation p.T201A 0.21 tolerated(0.14) probably_damaging(0.977) TCGA-DD-AAD1-01 12 85638822 85638822 T C LRRIQ1 3'UTR 0.31 TCGA-DD-AAD1-01 12 98849294 98849294 T C SLC9A7P1 RNA 0.21 TCGA-DD-AAD1-01 13 108863622 108863622 C T LIG4 5'UTR 0.09 TCGA-DD-AAD1-01 13 28519539 28519539 T G ATP5EP2 Missense_Mutation p.V48G 0.20 deleterious(0.05) benign(0.03) TCGA-DD-AAD1-01 13 36220029 36220029 A G NBEA Intron 0.17 TCGA-DD-AAD1-01 14 23524786 23524786 C T CDH24 Missense_Mutation p.V53I 0.05 deleterious(0) probably_damaging(0.995) TCGA-DD-AAD1-01 14 69520912 69520912 T G DCAF5 Missense_Mutation p.N831H 0.17 tolerated_low_confidence(0.13) benign(0.042) TCGA-DD-AAD1-01 14 69522113 69522113 C A DCAF5 Missense_Mutation p.W430C 0.26 deleterious(0) probably_damaging(0.998) TCGA-DD-AAD1-01 15 28443868 28443868 T G HERC2 Missense_Mutation p.E2588D 0.17 benign(0.063) TCGA-DD-AAD1-01 15 41804103 41804103 G A LTK Missense_Mutation p.A190V 0.06 tolerated_low_confidence(0.07) possibly_damaging(0.451) TCGA-DD-AAD1-01 15 81221411 81221411 C A KIAA1199 Missense_Mutation p.S836R 0.12 deleterious(0) probably_damaging(0.973) TCGA-DD-AAD1-01 15 87531237 87531237 C T AGBL1 Silent p.L1035L 0.06 TCGA-DD-AAD1-01 16 1374836 1374836 G - UBE2I 3'UTR 0.26 TCGA-DD-AAD1-01 16 19131852 19131852 A T ITPRIPL2 3'UTR 0.29 TCGA-DD-AAD1-01 16 30005783 30005783 T G HIRIP3 Missense_Mutation p.E228A 0.14 deleterious(0.02) benign(0.368) TCGA-DD-AAD1-01 16 50357551 50357552 GT - BRD7 Frame_Shift_Del p.L463Ffs*22 0.13 TCGA-DD-AAD1-01 16 735410 735410 C T WDR24 Silent p.A622A 0.07 TCGA-DD-AAD1-01 16 777498 777498 A G HAGHL 5'UTR 0.20 TCGA-DD-AAD1-01 16 85699912 85699912 C G GSE1 Nonsense_Mutation p.S1030* 0.32 TCGA-DD-AAD1-01 17 10298727 10298727 A T MYH8 Missense_Mutation p.L1562Q 0.28 deleterious(0) probably_damaging(0.926) TCGA-DD-AAD1-01 17 10351286 10351286 A T MYH4 Missense_Mutation p.L1605Q 0.28 deleterious(0) probably_damaging(0.98) TCGA-DD-AAD1-01 17 18827289 18827289 A G PRPSAP2 Missense_Mutation p.I266V 0.32 tolerated(0.09) benign(0.021) TCGA-DD-AAD1-01 17 20924519 20924519 C T USP22 Missense_Mutation p.G109S 0.07 tolerated(0.4) benign(0.145) TCGA-DD-AAD1-01 17 26574591 26574591 C G CTD-2008P7.8 RNA 0.25 TCGA-DD-AAD1-01 17 28656398 28656398 A T TMIGD1 Missense_Mutation p.S78T 0.21 tolerated(0.14) benign(0.028) TCGA-DD-AAD1-01 17 30528018 30528018 G A RHOT1 Missense_Mutation p.G382S 0.22 deleterious(0.01) possibly_damaging(0.804) TCGA-DD-AAD1-01 17 39388885 39388885 G A KRTAP9-3 Silent p.Q44Q 0.14 TCGA-DD-AAD1-01 17 41245524 41245524 G C BRCA1 Missense_Mutation p.A675G 0.16 deleterious(0.02) benign(0.272) TCGA-DD-AAD1-01 17 7247924 7247924 C T ACAP1 Missense_Mutation p.H271Y 0.07 tolerated(1) benign(0.002) TCGA-DD-AAD1-01 17 73830716 73830716 C A UNC13D Missense_Mutation p.G692C 0.24 deleterious(0.01) possibly_damaging(0.841) TCGA-DD-AAD1-01 17 74085364 74085364 G A EXOC7 Silent p.Y364Y 0.13 TCGA-DD-AAD1-01 18 28662231 28662231 G - DSC2 Frame_Shift_Del p.N413Mfs*7 0.11 TCGA-DD-AAD1-01 18 2885112 2885112 T A EMILIN2 Silent p.P136P 0.19 TCGA-DD-AAD1-01 18 40323617 40323617 G A RIT2 Silent p.A165A 0.16 TCGA-DD-AAD1-01 18 51888083 51888083 A G C18orf54 Missense_Mutation p.I118M 0.20 tolerated(0.11) possibly_damaging(0.813) TCGA-DD-AAD1-01 18 9254666 9254666 A C ANKRD12 Missense_Mutation p.K467N 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DD-AAD1-01 19 12429549 12429549 T A ZNF563 Missense_Mutation p.L430F 0.14 tolerated(1) benign(0.001) TCGA-DD-AAD1-01 19 17877522 17877522 A C FCHO1 Missense_Mutation p.K80T 0.18 deleterious(0) possibly_damaging(0.626) TCGA-DD-AAD1-01 19 3474810 3474810 G C C19orf77 3'UTR 0.11 TCGA-DD-AAD1-01 19 38376636 38376636 C T WDR87 Missense_Mutation p.V2520I 0.24 unknown(0) TCGA-DD-AAD1-01 19 45567337 45567337 A G CLASRP Missense_Mutation p.K325E 0.30 tolerated(0.11) benign(0.135) TCGA-DD-AAD1-01 19 55148389 55148389 C T LILRB1 3'UTR 0.27 TCGA-DD-AAD1-01 19 55715190 55715190 G A PTPRH Silent p.D282D 0.06 TCGA-DD-AAD1-01 19 58579350 58579350 G A ZNF135 Missense_Mutation p.G524S 0.20 tolerated(0.07) benign(0.337) TCGA-DD-AAD1-01 19 9063744 9063744 G T MUC16 Missense_Mutation p.A7901E 0.05 unknown(0) TCGA-DD-AAD1-01 1 119683215 119683215 G T WARS2 Missense_Mutation p.A18E 0.14 tolerated(0.3) benign(0.093) TCGA-DD-AAD1-01 1 11985893 11985893 C A KIAA2013 Silent p.L134L 0.12 TCGA-DD-AAD1-01 1 120839624 120839624 G A FAM72B 5'UTR 0.06 TCGA-DD-AAD1-01 1 12336568 12336568 A G VPS13D Missense_Mutation p.I975V 0.28 possibly_damaging(0.603) TCGA-DD-AAD1-01 1 15911427 15911427 G A AGMAT Silent p.G12G 0.30 TCGA-DD-AAD1-01 1 163318764 163318764 G A NUF2 Missense_Mutation p.G385D 0.19 tolerated(0.44) benign(0.025) TCGA-DD-AAD1-01 1 174979524 174979524 T G CACYBP 3'UTR 0.25 TCGA-DD-AAD1-01 1 179054765 179054765 T G TOR3A Missense_Mutation p.L126V 0.33 deleterious(0.01) probably_damaging(1) TCGA-DD-AAD1-01 1 216462647 216462647 C T USH2A Missense_Mutation p.R649K 0.15 benign(0.009) TCGA-DD-AAD1-01 1 223395300 223395300 C A SUSD4 3'UTR 0.40 TCGA-DD-AAD1-01 1 237754010 237754010 A C RYR2 Missense_Mutation p.Q1293P 0.16 benign(0.036) TCGA-DD-AAD1-01 1 245849955 245849955 T C KIF26B Missense_Mutation p.S1224P 0.16 tolerated(0.09) unknown(0) TCGA-DD-AAD1-01 1 247150827 247150827 G T ZNF695 Silent p.G330G 0.10 TCGA-DD-AAD1-01 1 248616773 248616773 T A OR2T2 Silent p.T225T 0.12 TCGA-DD-AAD1-01 1 39750866 39750866 C A MACF1 Silent p.R420R 0.20 TCGA-DD-AAD1-01 1 55619849 55619849 T G USP24 Silent p.A585A 0.23 TCGA-DD-AAD1-01 1 71512635 71512635 A T PTGER3 Missense_Mutation p.F209Y 0.20 deleterious(0) probably_damaging(1) TCGA-DD-AAD1-01 1 8073367 8073367 C T ERRFI1 Missense_Mutation p.G431D 0.23 tolerated_low_confidence(0.08) benign(0.024) TCGA-DD-AAD1-01 1 89573865 89573865 A G GBP2 Missense_Mutation p.I590T 0.19 deleterious(0.03) benign(0.147) TCGA-DD-AAD1-01 20 57568786 57568786 T A NELFCD Silent p.T534T 0.18 TCGA-DD-AAD1-01 20 61542449 61542449 C A DIDO1 Silent p.R172R 0.28 TCGA-DD-AAD1-01 21 45938611 45938611 A T C21orf90 3'UTR 0.08 TCGA-DD-AAD1-01 21 47831466 47831466 G T PCNT Missense_Mutation p.A1827S 0.24 benign(0.043) TCGA-DD-AAD1-01 22 20457079 20457079 T C RIMBP3 Missense_Mutation p.Q1408R 0.07 tolerated(1) benign(0.003) TCGA-DD-AAD1-01 22 22020270 22020270 C T PPIL2 5'Flank 0.20 TCGA-DD-AAD1-01 22 26118551 26118551 G T ADRBK2 3'UTR 0.24 TCGA-DD-AAD1-01 22 37887846 37887846 C A CARD10 Missense_Mutation p.R927L 0.10 tolerated(0.19) benign(0.081) TCGA-DD-AAD1-01 22 42321473 42321473 G T TNFRSF13C Missense_Mutation p.D151E 0.07 tolerated(0.08) benign(0.018) TCGA-DD-AAD1-01 22 50637724 50637724 A T TRABD 3'UTR 0.25 TCGA-DD-AAD1-01 2 108507208 108507208 A T RGPD4 3'UTR 0.19 TCGA-DD-AAD1-01 2 121736076 121736076 C T GLI2 Missense_Mutation p.R479W 0.20 deleterious(0) probably_damaging(0.998) TCGA-DD-AAD1-01 2 131673202 131673202 A G ARHGEF4 5'Flank 0.03 TCGA-DD-AAD1-01 2 144193255 144193255 C A ARHGAP15 Missense_Mutation p.A187E 0.12 deleterious(0.01) benign(0.36) TCGA-DD-AAD1-01 2 160708804 160708804 C T LY75-CD302 Missense_Mutation p.E931K 0.19 deleterious(0.01) probably_damaging(0.953) TCGA-DD-AAD1-01 2 168101315 168101315 C A XIRP2 Missense_Mutation p.T1138N 0.16 benign(0.016) TCGA-DD-AAD1-01 2 180634264 180634264 G A ZNF385B Silent p.P73P 0.11 TCGA-DD-AAD1-01 2 201798638 201798638 A G ORC2 Silent p.D256D 0.06 TCGA-DD-AAD1-01 2 209045541 209045541 C A C2orf80 Splice_Site p.X99_splice 0.20 TCGA-DD-AAD1-01 2 231742197 231742197 G A ITM2C Missense_Mutation p.G215E 0.05 deleterious(0) probably_damaging(1) TCGA-DD-AAD1-01 2 233350944 233350944 G T ECEL1 Silent p.I140I 0.05 TCGA-DD-AAD1-01 2 233392134 233392134 T A CHRND Silent p.T74T 0.41 TCGA-DD-AAD1-01 2 238296564 238296564 C T COL6A3 Missense_Mutation p.A325T 0.05 probably_damaging(0.99) TCGA-DD-AAD1-01 2 29296299 29296299 T C C2orf71 Missense_Mutation p.K277E 0.22 deleterious(0) probably_damaging(0.944) TCGA-DD-AAD1-01 2 64800193 64800193 T A AFTPH Missense_Mutation p.D795E 0.09 deleterious(0) benign(0.099) TCGA-DD-AAD1-01 3 154146848 154146848 C A GPR149 Missense_Mutation p.C186F 0.09 tolerated(0.05) possibly_damaging(0.811) TCGA-DD-AAD1-01 3 180320103 180320103 C T TTC14 Silent p.L18L 0.17 TCGA-DD-AAD1-01 3 193376712 193376712 A T OPA1 Missense_Mutation p.I772L 0.29 deleterious(0.01) possibly_damaging(0.688) TCGA-DD-AAD1-01 3 196910931 196910931 T A DLG1 Intron 0.25 TCGA-DD-AAD1-01 3 33194281 33194281 G A SUSD5 Missense_Mutation p.R615W 0.04 deleterious(0.03) probably_damaging(0.983) TCGA-DD-AAD1-01 3 52324605 52324605 C T GLYCTK Silent p.L83L 0.14 TCGA-DD-AAD1-01 3 52471666 52471666 A T SEMA3G Silent p.L585L 0.28 TCGA-DD-AAD1-01 4 108608317 108608339 CTTGCATTGTTGCGATCCTTAAA - PAPSS1 Splice_Site p.X138_splice 0.13 TCGA-DD-AAD1-01 4 110865040 110865040 A G EGF Silent p.R184R 0.17 TCGA-DD-AAD1-01 4 155462030 155462030 A G PLRG1 Silent p.T248T 0.17 TCGA-DD-AAD1-01 4 2746185 2746185 G A TNIP2 Missense_Mutation p.R319W 0.08 deleterious(0) probably_damaging(0.998) TCGA-DD-AAD1-01 4 69795677 69795677 C T UGT2A3 Missense_Mutation p.D480N 0.16 tolerated(0.59) benign(0.047) TCGA-DD-AAD1-01 4 72897911 72897911 G A NPFFR2 Missense_Mutation p.R98Q 0.08 tolerated_low_confidence(0.26) benign(0) TCGA-DD-AAD1-01 4 95583576 95583576 A G PDLIM5 Missense_Mutation p.Y559C 0.17 deleterious(0) probably_damaging(1) TCGA-DD-AAD1-01 5 167689579 167689579 G A TENM2 Missense_Mutation p.D2697N 0.10 tolerated(0.06) benign(0.062) TCGA-DD-AAD1-01 5 171766062 171766062 C A SH3PXD2B Missense_Mutation p.G683W 0.13 deleterious(0) possibly_damaging(0.599) TCGA-DD-AAD1-01 5 176310869 176310869 G A HK3 Missense_Mutation p.A652V 0.19 deleterious(0.03) benign(0.173) TCGA-DD-AAD1-01 5 19473363 19473363 C A CDH18 Missense_Mutation p.G782V 0.13 deleterious(0) possibly_damaging(0.688) TCGA-DD-AAD1-01 5 37048674 37048674 A G NIPBL Silent p.L2220L 0.22 TCGA-DD-AAD1-01 5 70806321 70806321 G A BDP1 Silent p.V1134V 0.23 TCGA-DD-AAD1-01 6 134323190 134323190 T G SLC2A12 Missense_Mutation p.I549L 0.15 deleterious(0.04) benign(0.015) TCGA-DD-AAD1-01 6 161127481 161127481 C - PLG Frame_Shift_Del p.A31Vfs*16 0.17 TCGA-DD-AAD1-01 6 163735950 163735950 C T PACRG Silent p.Y274Y 0.22 TCGA-DD-AAD1-01 6 24566957 24566957 T A KIAA0319 Missense_Mutation p.R720S 0.17 tolerated(0.14) possibly_damaging(0.85) TCGA-DD-AAD1-01 6 24578429 24578429 C T KIAA0319 Missense_Mutation p.E472K 0.18 deleterious(0.04) possibly_damaging(0.889) TCGA-DD-AAD1-01 6 26452498 26452498 G A BTN3A3 Silent p.P538P 0.17 TCGA-DD-AAD1-01 6 29274701 29274701 T C OR14J1 Missense_Mutation p.S79P 0.17 deleterious(0.01) possibly_damaging(0.739) TCGA-DD-AAD1-01 6 32182001 32182001 C A NOTCH4 Missense_Mutation p.G685W 0.17 deleterious(0) possibly_damaging(0.669) TCGA-DD-AAD1-01 6 47846992 47846992 A G PTCHD4 Missense_Mutation p.W530R 0.13 deleterious(0) probably_damaging(0.995) TCGA-DD-AAD1-01 6 4892565 4892565 G T CDYL Missense_Mutation p.G215C 0.23 deleterious(0.03) possibly_damaging(0.772) TCGA-DD-AAD1-01 6 75834089 75834089 T C COL12A1 Splice_Site p.X2203_splice 0.28 TCGA-DD-AAD1-01 7 132192559 132192559 A T PLXNA4 Silent p.I298I 0.13 TCGA-DD-AAD1-01 7 144070342 144070342 A G ARHGEF5 Missense_Mutation p.I1369V 0.06 tolerated(0.06) possibly_damaging(0.562) TCGA-DD-AAD1-01 7 150493641 150493641 A G TMEM176B Missense_Mutation p.V6A 0.15 deleterious(0) possibly_damaging(0.823) TCGA-DD-AAD1-01 7 27181398 27181398 T C HOXA5 3'UTR 0.22 TCGA-DD-AAD1-01 7 27187096 27187096 C A HOXA6 Silent p.S91S 0.22 TCGA-DD-AAD1-01 7 5355589 5355589 T G TNRC18 Missense_Mutation p.Q2287P 0.11 benign(0.153) TCGA-DD-AAD1-01 7 64169304 64169304 T A ZNF107 3'UTR 0.22 TCGA-DD-AAD1-01 7 87179184 87179184 T A ABCB1 Missense_Mutation p.I513F 0.17 deleterious(0) probably_damaging(0.99) TCGA-DD-AAD1-01 8 101145922 101145922 T C FBXO43 3'UTR 0.09 TCGA-DD-AAD1-01 8 114389050 114389050 G A CSMD3 Intron 0.06 TCGA-DD-AAD1-01 8 124253528 124253528 C A C8orf76 Missense_Mutation p.R20M 0.40 tolerated(0.15) possibly_damaging(0.668) TCGA-DD-AAD1-01 8 125076745 125076745 C G FER1L6 Missense_Mutation p.D1162E 0.08 tolerated(1) benign(0.155) TCGA-DD-AAD1-01 8 12881455 12881455 A C KIAA1456 3'UTR 0.25 TCGA-DD-AAD1-01 8 132052123 132052123 T A ADCY8 Missense_Mutation p.I153F 0.09 tolerated(0.65) possibly_damaging(0.734) TCGA-DD-AAD1-01 8 133152405 133152405 T C KCNQ3 Missense_Mutation p.M496V 0.22 tolerated(1) benign(0.001) TCGA-DD-AAD1-01 8 144660509 144660510 - CCGGC NAPRT1 5'UTR 0.20 TCGA-DD-AAD1-01 8 144735586 144735586 A G ZNF623 3'UTR 0.07 TCGA-DD-AAD1-01 8 2800024 2800024 G T CSMD1 Nonsense_Mutation p.S3502* 0.22 TCGA-DD-AAD1-01 8 36673143 36673143 G A KCNU1 Missense_Mutation p.M311I 0.03 tolerated(1) benign(0.096) TCGA-DD-AAD1-01 8 41805294 41805294 C A KAT6A Missense_Mutation p.C626F 0.13 possibly_damaging(0.564) TCGA-DD-AAD1-01 8 67929857 67929857 T C PPP1R42 Silent p.A42A 0.05 TCGA-DD-AAD1-01 9 101056112 101056112 G T GABBR2 Missense_Mutation p.S872Y 0.18 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-DD-AAD1-01 9 101470749 101470749 C T GABBR2 Missense_Mutation p.E91K 0.11 tolerated(0.58) benign(0.045) TCGA-DD-AAD1-01 9 114840897 114840897 C T SUSD1 Silent p.P558P 0.25 TCGA-DD-AAD1-01 9 13133827 13133827 G A MPDZ Missense_Mutation p.P1487L 0.18 tolerated(0.11) benign(0.012) TCGA-DD-AAD1-01 9 34725939 34725939 A T FAM205A Missense_Mutation p.F433Y 0.10 deleterious(0.04) benign(0.022) TCGA-DD-AAD1-01 9 79117570 79117570 C T GCNT1 Silent p.D91D 0.20 TCGA-DD-AAD1-01 9 95609239 95609239 G A ZNF484 Silent p.C612C 0.18 TCGA-DD-AAD1-01 X 107464546 107464546 G - COL4A6 Frame_Shift_Del p.S69Lfs*7 0.12 TCGA-DD-AAD1-01 X 107824223 107824223 G T COL4A5 Missense_Mutation p.G301V 0.21 unknown(0) TCGA-DD-AAD1-01 X 118540512 118540512 T C SLC25A43 Missense_Mutation p.I122T 0.22 tolerated(0.08) benign(0.102) TCGA-DD-AAD1-01 X 123785937 123785937 A T TENM1 Missense_Mutation p.V469D 0.24 tolerated(0.26) benign(0.017) TCGA-DD-AAD1-01 X 138686908 138686908 T C MCF2 Missense_Mutation p.I635V 0.20 tolerated(0.2) benign(0.008) TCGA-DD-AAD1-01 X 144906211 144906211 T C SLITRK2 Silent p.Y756Y 0.19 TCGA-DD-AAD1-01 X 15402960 15402960 A T PIR 3'UTR 0.17 TCGA-DD-AAD1-01 X 15560110 15560110 T C BMX Missense_Mutation p.L467P 0.18 deleterious(0) probably_damaging(1) TCGA-DD-AAD1-01 X 30327407 30327407 G A NR0B1 Missense_Mutation p.A25V 0.22 tolerated_low_confidence(0.13) benign(0.095) TCGA-DD-AAD1-01 X 35944211 35944211 T A CXorf22 Silent p.P109P 0.23 TCGA-DD-AAD1-01 X 48463454 48463454 A T WDR13 3'UTR 0.20 TCGA-DD-AAD1-01 X 51487223 51487223 A G GSPT2 Silent p.G167G 0.23 TCGA-DD-AAD2-01 10 124749710 124749710 A G PSTK 3'UTR 0.20 TCGA-DD-AAD2-01 10 17837970 17837970 G A TMEM236 Missense_Mutation p.V175M 0.50 deleterious(0) probably_damaging(0.999) TCGA-DD-AAD2-01 10 43694571 43694571 G A RASGEF1A Silent p.I307I 0.26 TCGA-DD-AAD2-01 10 73591673 73591673 G A PSAP Missense_Mutation p.S60F 0.23 deleterious(0) probably_damaging(0.981) TCGA-DD-AAD2-01 11 105782835 105782835 T C GRIA4 Intron 0.08 TCGA-DD-AAD2-01 11 120008061 120008061 C T TRIM29 Missense_Mutation p.V227M 0.24 tolerated(0.13) benign(0.06) TCGA-DD-AAD2-01 11 123474148 123474148 G A GRAMD1B Silent p.K212K 0.21 TCGA-DD-AAD2-01 11 124747876 124747876 G A ROBO3 Silent p.T1010T 0.21 TCGA-DD-AAD2-01 11 19076855 19076855 G T MRGPRX2 3'UTR 0.16 TCGA-DD-AAD2-01 11 44639862 44639862 G A CD82 Missense_Mutation p.G197S 0.16 tolerated(0.86) benign(0.005) TCGA-DD-AAD2-01 12 42555530 42555530 C T YAF2 Missense_Mutation p.V88I 0.15 tolerated(0.11) possibly_damaging(0.651) TCGA-DD-AAD2-01 12 48137437 48137437 T A RAPGEF3 Silent p.P567P 0.14 TCGA-DD-AAD2-01 12 56234593 56234593 C T MMP19 Silent p.R126R 0.15 TCGA-DD-AAD2-01 12 95478307 95478307 A C FGD6 Missense_Mutation p.V1408G 0.21 deleterious(0) possibly_damaging(0.651) TCGA-DD-AAD2-01 12 95478356 95478356 A C FGD6 Missense_Mutation p.S1392A 0.18 tolerated(0.24) benign(0.02) TCGA-DD-AAD2-01 13 29933428 29933428 C T MTUS2 Nonsense_Mutation p.R989* 0.23 TCGA-DD-AAD2-01 13 35883725 35883725 G T NBEA Nonsense_Mutation p.G1967* 0.17 TCGA-DD-AAD2-01 13 35883726 35883726 G T NBEA Missense_Mutation p.G1967V 0.16 deleterious(0) probably_damaging(0.998) TCGA-DD-AAD2-01 13 66879012 66879012 G T PCDH9 Silent p.P1163P 0.20 TCGA-DD-AAD2-01 14 21498863 21498863 T A TPPP2 Missense_Mutation p.D41E 0.11 deleterious(0) possibly_damaging(0.776) TCGA-DD-AAD2-01 14 33290961 33290961 G T AKAP6 Missense_Mutation p.M1314I 0.18 tolerated(0.33) benign(0) TCGA-DD-AAD2-01 14 61441713 61441736 AGGCAAAGTACAAGGGTTCAATAG CGGCAA TRMT5 3'UTR 0.24 TCGA-DD-AAD2-01 15 45457174 45457174 A G DUOX1 3'UTR 0.12 TCGA-DD-AAD2-01 15 76508755 76508755 C A ETFA 3'UTR 0.33 TCGA-DD-AAD2-01 15 85634389 85634389 A T PDE8A Missense_Mutation p.N277Y 0.17 tolerated(0.07) probably_damaging(0.98) TCGA-DD-AAD2-01 15 90176120 90176121 - A KIF7 Frame_Shift_Ins p.L943Pfs*105 0.14 TCGA-DD-AAD2-01 15 92459637 92459637 G A SLCO3A1 Missense_Mutation p.V199I 0.23 tolerated(0.19) possibly_damaging(0.536) TCGA-DD-AAD2-01 16 24886979 24886979 G A SLC5A11 Missense_Mutation p.R135H 0.25 deleterious(0) probably_damaging(1) TCGA-DD-AAD2-01 16 50117925 50117925 G A HEATR3 Missense_Mutation p.M373I 0.06 tolerated(0.05) benign(0.01) TCGA-DD-AAD2-01 16 57689423 57689423 G T GPR56 Missense_Mutation p.S294I 0.08 deleterious(0.01) possibly_damaging(0.706) TCGA-DD-AAD2-01 16 66785466 66785466 A T DYNC1LI2 Missense_Mutation p.L10Q 0.13 deleterious_low_confidence(0.05) benign(0.348) TCGA-DD-AAD2-01 16 74678544 74678544 C T RFWD3 Nonsense_Mutation p.W294* 0.17 TCGA-DD-AAD2-01 16 88722115 88722115 T A MVD Silent p.T209T 0.28 TCGA-DD-AAD2-01 17 32955722 32955722 C T TMEM132E Missense_Mutation p.P290L 0.17 tolerated(0.29) benign(0.001) TCGA-DD-AAD2-01 17 40120710 40120710 C G CNP Missense_Mutation p.L210V 0.22 deleterious(0) possibly_damaging(0.683) TCGA-DD-AAD2-01 17 43189858 43189858 G T PLCD3 3'UTR 0.12 TCGA-DD-AAD2-01 17 49157040 49157040 T G SPAG9 Missense_Mutation p.Q110P 0.13 tolerated(0.28) possibly_damaging(0.828) TCGA-DD-AAD2-01 17 7106632 7106632 G A DLG4 Silent p.I217I 0.18 TCGA-DD-AAD2-01 19 14020667 14020667 G C CC2D1A Missense_Mutation p.G31A 0.13 tolerated(0.16) benign(0.417) TCGA-DD-AAD2-01 19 1432588 1432588 C T DAZAP1 Missense_Mutation p.P316L 0.19 deleterious(0) unknown(0) TCGA-DD-AAD2-01 19 19105104 19105104 G A SUGP2 3'UTR 0.14 TCGA-DD-AAD2-01 19 3619227 3619227 T C CACTIN Missense_Mutation p.I300V 0.17 deleterious(0.01) possibly_damaging(0.747) TCGA-DD-AAD2-01 19 47844150 47844150 G T C5AR2 Missense_Mutation p.D32Y 0.06 deleterious(0.03) benign(0.029) TCGA-DD-AAD2-01 19 48918223 48918223 C G GRIN2D Silent p.L505L 0.24 TCGA-DD-AAD2-01 19 54746592 54746592 G A LILRA6 Silent p.P3P 0.27 TCGA-DD-AAD2-01 19 56736035 56736035 T C ZSCAN5A Silent p.K127K 0.07 TCGA-DD-AAD2-01 19 57325481 57325481 G C PEG3 Silent p.A1443A 0.13 TCGA-DD-AAD2-01 19 9578805 9578805 G C ZNF560 Missense_Mutation p.S273C 0.09 tolerated(0.06) possibly_damaging(0.869) TCGA-DD-AAD2-01 1 116380822 116380822 G A NHLH2 Missense_Mutation p.P58S 0.14 tolerated(0.6) benign(0.001) TCGA-DD-AAD2-01 1 154519928 154519928 G T TDRD10 Silent p.G332G 0.21 TCGA-DD-AAD2-01 1 15888777 15888777 A T DNAJC16 Missense_Mutation p.D432V 0.14 deleterious(0.05) benign(0.021) TCGA-DD-AAD2-01 1 16531261 16531261 G T ARHGEF19 Silent p.R634R 0.07 TCGA-DD-AAD2-01 1 169505910 169505910 T C F5 Missense_Mutation p.D1602G 0.24 tolerated(0.05) benign(0.283) TCGA-DD-AAD2-01 1 182823255 182823255 C G DHX9 Missense_Mutation p.Q190E 0.14 deleterious(0) probably_damaging(0.998) TCGA-DD-AAD2-01 1 19166377 19166377 C T TAS1R2 Missense_Mutation p.A746T 0.19 tolerated(0.06) probably_damaging(0.985) TCGA-DD-AAD2-01 1 220870013 220870013 C T C1orf115 Silent p.F123F 0.29 TCGA-DD-AAD2-01 1 244538727 244538727 T C C1orf100 Missense_Mutation p.L37P 0.12 deleterious(0) probably_damaging(0.972) TCGA-DD-AAD2-01 1 44402237 44402237 C G ARTN Missense_Mutation p.R163G 0.25 deleterious(0.02) possibly_damaging(0.867) TCGA-DD-AAD2-01 1 45363027 45363027 C T EIF2B3 Missense_Mutation p.G219E 0.14 tolerated(0.08) benign(0) TCGA-DD-AAD2-01 1 6585784 6585784 T C NOL9 3'UTR 0.26 TCGA-DD-AAD2-01 1 85742074 85742074 G A BCL10 5'UTR 0.21 TCGA-DD-AAD2-01 20 43090687 43090687 A G C20orf62 Silent p.P117P 0.20 TCGA-DD-AAD2-01 22 40661255 40661255 C G TNRC6B Missense_Mutation p.Q341E 0.14 deleterious(0.03) benign(0.194) TCGA-DD-AAD2-01 2 179447173 179447173 C T TTN Missense_Mutation p.A22004T 0.23 TCGA-DD-AAD2-01 2 185802852 185802852 T G ZNF804A Missense_Mutation p.V910G 0.22 tolerated(0.09) benign(0.038) TCGA-DD-AAD2-01 2 198266709 198266709 C A SF3B1 Missense_Mutation p.K741N 0.18 deleterious(0) probably_damaging(0.992) TCGA-DD-AAD2-01 2 201457898 201457898 A G AOX1 Silent p.T25T 0.15 TCGA-DD-AAD2-01 2 21229941 21229941 T G APOB Missense_Mutation p.M3267L 0.16 benign(0.016) TCGA-DD-AAD2-01 2 234420374 234420374 T A USP40 Missense_Mutation p.K847I 0.05 deleterious(0.01) possibly_damaging(0.586) TCGA-DD-AAD2-01 2 237490371 237490371 A G ACKR3 3'UTR 0.09 TCGA-DD-AAD2-01 2 48132711 48132711 T G FBXO11 Missense_Mutation p.Q50P 0.09 tolerated_low_confidence(0.21) unknown(0) TCGA-DD-AAD2-01 2 48809324 48809324 A T STON1-GTF2A1L Nonsense_Mutation p.K518* 0.15 TCGA-DD-AAD2-01 2 9642319 9642319 C A ADAM17 Missense_Mutation p.G544V 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-DD-AAD2-01 2 98340506 98340506 G T ZAP70 Missense_Mutation p.D3Y 0.18 deleterious(0) possibly_damaging(0.814) TCGA-DD-AAD2-01 3 12881778 12881778 C A RPL32 Intron 0.17 TCGA-DD-AAD2-01 3 44762762 44762763 - A ZNF502 Frame_Shift_Ins p.S154Ifs*5 0.14 TCGA-DD-AAD2-01 3 53845336 53845336 T C CACNA1D Missense_Mutation p.L2150P 0.13 tolerated_low_confidence(0.12) benign(0.347) TCGA-DD-AAD2-01 3 71021808 71021808 A C FOXP1 Missense_Mutation p.L519R 0.12 deleterious(0) probably_damaging(0.998) TCGA-DD-AAD2-01 4 162577513 162577513 A G FSTL5 Silent p.I287I 0.14 TCGA-DD-AAD2-01 5 110445992 110445992 C T WDR36 Silent p.G533G 0.27 TCGA-DD-AAD2-01 5 132270332 132270332 C G AFF4 Missense_Mutation p.S142T 0.30 tolerated(0.46) benign(0.009) TCGA-DD-AAD2-01 5 137475816 137475816 T C BRD8 Missense_Mutation p.S1219G 0.19 tolerated_low_confidence(0.06) benign(0.002) TCGA-DD-AAD2-01 5 140027509 140027509 A T IK Missense_Mutation p.S6C 0.11 deleterious_low_confidence(0.05) benign(0.174) TCGA-DD-AAD2-01 5 140181355 140181355 C T PCDHA3 Silent p.S191S 0.22 TCGA-DD-AAD2-01 5 140255556 140255556 C A PCDHA12 Missense_Mutation p.L167I 0.25 tolerated_low_confidence(0.07) benign(0.135) TCGA-DD-AAD2-01 5 179070212 179070212 C A C5orf60 Splice_Site p.X114_splice 0.22 TCGA-DD-AAD2-01 5 5190154 5190154 T C ADAMTS16 Missense_Mutation p.M373T 0.20 tolerated(0.67) benign(0.006) TCGA-DD-AAD2-01 5 5190170 5190170 T A ADAMTS16 Silent p.T378T 0.21 TCGA-DD-AAD2-01 5 61681317 61681317 T A KIF2A Missense_Mutation p.V719E 0.25 deleterious(0) probably_damaging(0.936) TCGA-DD-AAD2-01 5 79617277 79617277 G A SPZ1 Missense_Mutation p.A415T 0.11 deleterious(0) probably_damaging(0.959) TCGA-DD-AAD2-01 5 99871445 99871445 G A FAM174A Missense_Mutation p.A71T 0.25 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-DD-AAD2-01 6 112390640 112390641 TT - WISP3 Frame_Shift_Del p.F313Lfs*7 0.15 TCGA-DD-AAD2-01 6 123837283 123837283 T C TRDN Intron 0.22 TCGA-DD-AAD2-01 6 146276072 146276072 T G SHPRH Missense_Mutation p.L129F 0.18 tolerated_low_confidence(0.29) possibly_damaging(0.786) TCGA-DD-AAD2-01 6 152489254 152489255 - C SYNE1 Intron 0.18 TCGA-DD-AAD2-01 6 152793449 152793449 C A SYNE1 Missense_Mutation p.D484Y 0.19 probably_damaging(0.987) TCGA-DD-AAD2-01 6 165715430 165715430 C A C6orf118 Silent p.P127P 0.18 TCGA-DD-AAD2-01 6 50810840 50810840 A G TFAP2B Missense_Mutation p.Q373R 0.15 deleterious(0.01) possibly_damaging(0.855) TCGA-DD-AAD2-01 6 56480793 56480793 T G DST Intron 0.28 TCGA-DD-AAD2-01 6 66200596 66200596 C G EYS Missense_Mutation p.K251N 0.19 tolerated(0.5) benign(0.107) TCGA-DD-AAD2-01 6 70890393 70890393 C A COL19A1 Missense_Mutation p.P918Q 0.18 tolerated(0.23) probably_damaging(0.995) TCGA-DD-AAD2-01 7 37960698 37960698 G A EPDR1 Missense_Mutation p.V53I 0.20 tolerated(0.08) benign(0.186) TCGA-DD-AAD2-01 7 44613544 44613544 G A DDX56 5'UTR 0.28 TCGA-DD-AAD2-01 8 113363436 113363436 C A CSMD3 Missense_Mutation p.R2098I 0.07 deleterious(0) possibly_damaging(0.53) TCGA-DD-AAD2-01 8 113697827 113697827 T C CSMD3 Missense_Mutation p.N764D 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-DD-AAD2-01 8 133941375 133941375 C A TG Missense_Mutation p.A1585D 0.10 tolerated(1) benign(0.001) TCGA-DD-AAD2-01 8 144887556 144887556 G A SCRIB Missense_Mutation p.A799V 0.16 possibly_damaging(0.833) TCGA-DD-AAD2-01 8 37702006 37702006 C A BRF2 3'UTR 0.26 TCGA-DD-AAD2-01 8 41513192 41513192 C A ANK1 3'UTR 0.19 TCGA-DD-AAD2-01 8 99129330 99129330 A C HRSP12 5'UTR 0.09 TCGA-DD-AAD2-01 9 139837919 139837919 T C FBXW5 Missense_Mutation p.D78G 0.17 tolerated(0.27) possibly_damaging(0.593) TCGA-DD-AAD2-01 9 20821034 20821034 C G FOCAD Missense_Mutation p.A586G 0.21 deleterious(0.01) probably_damaging(0.951) TCGA-DD-AAD2-01 9 34835935 34835935 A G FAM205B RNA 0.21 TCGA-DD-AAD2-01 9 96061396 96061396 G A WNK2 Missense_Mutation p.A2027T 0.21 unknown(0) TCGA-DD-AAD2-01 X 32536160 32536160 C A DMD Nonsense_Mutation p.E753* 0.39 TCGA-DD-AAD2-01 X 90690668 90690668 A G PABPC5 Missense_Mutation p.E31G 0.08 deleterious(0) probably_damaging(1) TCGA-DD-AAD3-01 10 129676289 129676289 G A CLRN3 3'UTR 0.26 TCGA-DD-AAD3-01 10 76789169 76789169 G A KAT6B Silent p.E1529E 0.36 TCGA-DD-AAD3-01 10 85992484 85992484 G C LRIT1 Missense_Mutation p.S357R 0.23 tolerated(0.3) benign(0.091) TCGA-DD-AAD3-01 10 93389592 93389592 G C PPP1R3C 3'UTR 0.18 TCGA-DD-AAD3-01 10 94250296 94250296 T C IDE Missense_Mutation p.Y496C 0.10 deleterious(0) probably_damaging(0.996) TCGA-DD-AAD3-01 10 98133500 98133500 C T TLL2 Missense_Mutation p.G839R 0.33 deleterious(0) probably_damaging(0.998) TCGA-DD-AAD3-01 11 105775994 105775994 T G GRIA4 Missense_Mutation p.D375E 0.34 tolerated(0.22) benign(0.029) TCGA-DD-AAD3-01 11 31669307 31669307 C T ELP4 Missense_Mutation p.R316C 0.28 deleterious(0) probably_damaging(0.969) TCGA-DD-AAD3-01 11 499113 499113 G A RNH1 Silent p.F172F 0.11 TCGA-DD-AAD3-01 11 51411980 51411980 C A OR4A5 Missense_Mutation p.C139F 0.04 deleterious_low_confidence(0) probably_damaging(0.925) TCGA-DD-AAD3-01 11 5653572 5653572 A G TRIM34 Missense_Mutation p.K4R 0.12 tolerated(0.25) benign(0.097) TCGA-DD-AAD3-01 11 85396947 85396947 A G CCDC89 Missense_Mutation p.L76P 0.30 deleterious(0) probably_damaging(0.999) TCGA-DD-AAD3-01 12 101381339 101381339 T C ANO4 Missense_Mutation p.F174L 0.28 tolerated(0.54) benign(0.003) TCGA-DD-AAD3-01 12 125549953 125549953 G C AACS 5'UTR 0.33 TCGA-DD-AAD3-01 12 20799827 20799827 C A PDE3A Missense_Mutation p.H836Q 0.29 deleterious(0) probably_damaging(1) TCGA-DD-AAD3-01 12 38714365 38714365 A G ALG10B Missense_Mutation p.I258V 0.31 tolerated(0.52) benign(0.007) TCGA-DD-AAD3-01 12 55523606 55523606 A G OR9K2 Silent p.Q18Q 0.11 TCGA-DD-AAD3-01 12 57499293 57499293 A T STAT6 Missense_Mutation p.L257Q 0.31 deleterious(0.01) probably_damaging(0.949) TCGA-DD-AAD3-01 14 57046575 57046575 C G TMEM260 5'UTR 0.45 TCGA-DD-AAD3-01 14 65053933 65053933 T G PPP1R36 Missense_Mutation p.Y245D 0.32 deleterious(0.01) probably_damaging(0.933) TCGA-DD-AAD3-01 14 65252487 65252487 C G SPTB Missense_Mutation p.K1248N 0.32 deleterious(0) probably_damaging(0.997) TCGA-DD-AAD3-01 15 54307145 54307145 G C UNC13C Missense_Mutation p.S682T 0.29 tolerated_low_confidence(0.07) benign(0.008) TCGA-DD-AAD3-01 15 60715904 60715904 T C NARG2 Missense_Mutation p.K960E 0.32 deleterious(0.04) benign(0.003) TCGA-DD-AAD3-01 15 66797616 66797616 T A ZWILCH 5'UTR 0.53 TCGA-DD-AAD3-01 15 72643416 72643416 C T HEXA Intron 0.16 TCGA-DD-AAD3-01 15 77406468 77406468 G A PEAK1 3'UTR 0.06 TCGA-DD-AAD3-01 15 81517759 81517759 G T IL16 Missense_Mutation p.A7S 0.05 tolerated(0.71) benign(0.006) TCGA-DD-AAD3-01 16 227353 227353 C T HBA1 Silent p.A124A 0.07 TCGA-DD-AAD3-01 16 30720956 30720956 C T SRCAP Silent p.N252N 0.30 TCGA-DD-AAD3-01 16 69333647 69333647 C A SNTB2 Nonsense_Mutation p.Y500* 0.43 TCGA-DD-AAD3-01 16 84228974 84228974 G A ADAD2 Missense_Mutation p.C351Y 0.51 tolerated(0.46) benign(0.111) TCGA-DD-AAD3-01 16 84402191 84402191 G C ATP2C2 5'UTR 0.22 TCGA-DD-AAD3-01 16 86600945 86600945 C A FOXC2 Missense_Mutation p.Q2K 0.03 deleterious(0.01) possibly_damaging(0.465) TCGA-DD-AAD3-01 17 4166988 4166988 C A ANKFY1 Missense_Mutation p.R13L 0.21 tolerated_low_confidence(0.08) unknown(0) TCGA-DD-AAD3-01 17 44073847 44073847 G A MAPT Silent p.P548P 0.29 TCGA-DD-AAD3-01 17 59857746 59857746 T C BRIP1 Missense_Mutation p.N604S 0.33 tolerated(1) benign(0.031) TCGA-DD-AAD3-01 17 74073440 74073440 C T GALR2 Silent p.L364L 0.20 TCGA-DD-AAD3-01 17 7577126 7577126 T A TP53 Missense_Mutation p.E271V 0.29 deleterious(0) probably_damaging(0.999) TCGA-DD-AAD3-01 18 76753069 76753069 A G SALL3 Missense_Mutation p.S360G 0.37 deleterious(0.02) unknown(0) TCGA-DD-AAD3-01 19 12146498 12146498 A C ZNF433 5'UTR 0.25 TCGA-DD-AAD3-01 19 16268237 16268237 T A HSH2D 3'Flank 0.35 TCGA-DD-AAD3-01 19 17322910 17322911 GA - MYO9B 3'UTR 0.20 TCGA-DD-AAD3-01 19 30021060 30021060 T G VSTM2B Missense_Mutation p.I211S 0.22 tolerated(0.77) benign(0) TCGA-DD-AAD3-01 19 41114199 41114199 A G LTBP4 Silent p.R477R 0.11 TCGA-DD-AAD3-01 19 42409114 42409114 C T ARHGEF1 Silent p.F740F 0.29 TCGA-DD-AAD3-01 19 44273601 44273601 T - KCNN4 Frame_Shift_Del p.I348Sfs*9 0.19 TCGA-DD-AAD3-01 19 6732365 6732365 G C GPR108 Missense_Mutation p.T345S 0.08 deleterious(0) probably_damaging(0.94) TCGA-DD-AAD3-01 1 109010228 109010228 C T NBPF6 Missense_Mutation p.P606S 0.17 tolerated(0.65) benign(0.003) TCGA-DD-AAD3-01 1 152484138 152484138 C T LCE5A Missense_Mutation p.P43L 0.03 tolerated_low_confidence(0.24) unknown(0) TCGA-DD-AAD3-01 1 155823539 155823539 C A GON4L Silent p.V11V 0.47 TCGA-DD-AAD3-01 1 160259858 160259858 T C COPA 3'UTR 0.39 TCGA-DD-AAD3-01 1 160259901 160259901 T C COPA 3'UTR 0.40 TCGA-DD-AAD3-01 1 16621392 16621392 T C FBXO42 Missense_Mutation p.N130D 0.29 deleterious(0.04) probably_damaging(0.992) TCGA-DD-AAD3-01 1 179783118 179783118 C A FAM163A Missense_Mutation p.P100T 0.22 deleterious(0.01) probably_damaging(0.949) TCGA-DD-AAD3-01 1 205628256 205628256 C A SLC45A3 3'UTR 0.31 TCGA-DD-AAD3-01 1 231376848 231376848 C A C1orf131 Nonsense_Mutation p.E14* 0.06 TCGA-DD-AAD3-01 1 240969620 240969620 C G RGS7 Missense_Mutation p.W363C 0.55 deleterious(0) probably_damaging(1) TCGA-DD-AAD3-01 1 33361532 33361532 G T TMEM54 Silent p.R83R 0.08 TCGA-DD-AAD3-01 1 44456052 44456052 C T B4GALT2 Missense_Mutation p.R380W 0.15 deleterious(0.01) possibly_damaging(0.843) TCGA-DD-AAD3-01 1 47611805 47611805 G T CYP4A22 Silent p.L448L 0.26 TCGA-DD-AAD3-01 1 91180225 91180225 A T BARHL2 Silent p.A238A 0.06 TCGA-DD-AAD3-01 20 44511555 44511555 T A ZSWIM1 Silent p.L108L 0.31 TCGA-DD-AAD3-01 22 21384617 21384617 G A SLC7A4 Missense_Mutation p.L336F 0.13 tolerated(0.65) benign(0.008) TCGA-DD-AAD3-01 22 41545769 41545769 A G EP300 Missense_Mutation p.Q795R 0.35 unknown(0) TCGA-DD-AAD3-01 2 212543805 212543805 A G ERBB4 Missense_Mutation p.C532R 0.10 deleterious(0) probably_damaging(1) TCGA-DD-AAD3-01 2 28113208 28113208 G A RBKS Missense_Mutation p.A2V 0.38 deleterious_low_confidence(0.01) benign(0.262) TCGA-DD-AAD3-01 2 28113209 28113209 C A RBKS Missense_Mutation p.A2S 0.37 tolerated_low_confidence(0.08) benign(0.25) TCGA-DD-AAD3-01 2 28113210 28113210 C A RBKS Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0.02) benign(0.127) TCGA-DD-AAD3-01 2 74596526 74596526 C A DCTN1 Silent p.R495R 0.32 TCGA-DD-AAD3-01 2 85788530 85788530 C T GGCX Missense_Mutation p.A8T 0.34 tolerated_low_confidence(0.55) benign(0.002) TCGA-DD-AAD3-01 3 100947684 100947684 C A IMPG2 Missense_Mutation p.A1224S 0.26 deleterious(0) possibly_damaging(0.678) TCGA-DD-AAD3-01 3 164773036 164773036 C G SI Missense_Mutation p.W486C 0.28 deleterious(0) probably_damaging(0.999) TCGA-DD-AAD3-01 3 197598194 197598194 A G LRCH3 Splice_Site p.X665_splice 0.26 TCGA-DD-AAD3-01 3 28476749 28476749 A G ZCWPW2 Missense_Mutation p.I161V 0.32 tolerated(0.16) benign(0.01) TCGA-DD-AAD3-01 4 100002517 100002517 T A ADH5 Nonsense_Mutation p.R115* 0.42 TCGA-DD-AAD3-01 4 126242565 126242565 A G FAT4 Missense_Mutation p.I1667V 0.24 possibly_damaging(0.781) TCGA-DD-AAD3-01 4 153691328 153691328 G C TIGD4 Missense_Mutation p.Q277E 0.12 tolerated(0.09) possibly_damaging(0.815) TCGA-DD-AAD3-01 4 155665788 155665788 A C LRAT Missense_Mutation p.K104Q 0.34 deleterious(0.01) possibly_damaging(0.794) TCGA-DD-AAD3-01 4 162508676 162508676 C G FSTL5 Missense_Mutation p.V316L 0.03 deleterious(0.04) benign(0.001) TCGA-DD-AAD3-01 4 6718870 6718870 G A BLOC1S4 3'UTR 0.24 TCGA-DD-AAD3-01 4 77231063 77231063 G T FAM47E-STBD1 Silent p.G329G 0.47 TCGA-DD-AAD3-01 4 8582915 8582915 G A GPR78 Missense_Mutation p.R69H 0.25 tolerated(0.56) benign(0.009) TCGA-DD-AAD3-01 5 118691623 118691623 T C TNFAIP8 5'UTR 0.15 TCGA-DD-AAD3-01 5 140516856 140516856 T C PCDHB5 Missense_Mutation p.F614L 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.793) TCGA-DD-AAD3-01 5 140810186 140810186 A G PCDHGA12 5'UTR 0.33 TCGA-DD-AAD3-01 5 55081630 55081630 C A DDX4 Silent p.G265G 0.29 TCGA-DD-AAD3-01 5 57750578 57750578 T C PLK2 Silent p.T630T 0.28 TCGA-DD-AAD3-01 6 108985342 108985342 G T FOXO3 Nonsense_Mutation p.G436* 0.09 TCGA-DD-AAD3-01 6 118881002 118881002 T C PLN 3'UTR 0.57 TCGA-DD-AAD3-01 6 13622650 13622650 C T RANBP9 Missense_Mutation p.A712T 0.28 deleterious(0.01) probably_damaging(0.984) TCGA-DD-AAD3-01 6 32183114 32183114 T G NOTCH4 Missense_Mutation p.K637T 0.19 tolerated(0.07) benign(0.002) TCGA-DD-AAD3-01 6 33170833 33170833 G A SLC39A7 Missense_Mutation p.E363K 0.27 deleterious(0) probably_damaging(1) TCGA-DD-AAD3-01 6 39271749 39271749 G A KCNK17 Silent p.F224F 0.06 TCGA-DD-AAD3-01 6 43470061 43470061 G A TJAP1 Missense_Mutation p.E111K 0.21 deleterious(0.01) benign(0.397) TCGA-DD-AAD3-01 6 53010550 53010550 G C GCM1 5'UTR 0.23 TCGA-DD-AAD3-01 6 54191649 54191649 G T TINAG Missense_Mutation p.G187C 0.04 deleterious(0) probably_damaging(1) TCGA-DD-AAD3-01 6 7879308 7879308 T C BMP6 Silent p.D402D 0.29 TCGA-DD-AAD3-01 7 113518594 113518594 G A PPP1R3A Silent p.V851V 0.11 TCGA-DD-AAD3-01 7 18624963 18624963 A T HDAC9 Missense_Mutation p.T28S 0.16 tolerated(0.06) probably_damaging(0.997) TCGA-DD-AAD3-01 7 77789511 77789511 G T MAGI2 Silent p.T892T 0.10 TCGA-DD-AAD3-01 7 77789512 77789512 G T MAGI2 Missense_Mutation p.T892N 0.11 tolerated(0.08) benign(0.055) TCGA-DD-AAD3-01 7 88964202 88964202 A G ZNF804B Missense_Mutation p.K636E 0.29 deleterious(0.01) benign(0.037) TCGA-DD-AAD3-01 8 52287173 52287173 G A PXDNL Silent p.L1226L 0.31 TCGA-DD-AAD3-01 9 111693419 111693419 T C IKBKAP Missense_Mutation p.N3S 0.46 deleterious(0) probably_damaging(0.999) TCGA-DD-AAD3-01 9 72333569 72333569 T C PTAR1 Missense_Mutation p.N327D 0.44 tolerated_low_confidence(0.48) benign(0.001) TCGA-DD-AAD3-01 X 107858226 107858226 A T COL4A5 Silent p.P827P 0.03 TCGA-DD-AAD3-01 X 43698252 43698252 C A MAOB Splice_Site p.X48_splice 0.44 TCGA-DD-AAD3-01 X 48244851 48244851 G A SSX4 Missense_Mutation p.G81E 0.14 tolerated(0.19) benign(0.088) TCGA-DD-AAD3-01 X 5821576 5821576 G T NLGN4X Missense_Mutation p.D381E 0.14 tolerated(1) probably_damaging(0.954) TCGA-DD-AAD5-01 10 120790887 120790887 T C NANOS1 3'UTR 0.39 TCGA-DD-AAD5-01 10 121678006 121678006 C G SEC23IP Missense_Mutation p.H619D 0.39 tolerated(0.62) benign(0) TCGA-DD-AAD5-01 10 15256432 15256432 G C FAM171A1 Silent p.P385P 0.20 TCGA-DD-AAD5-01 10 44111881 44111881 T C ZNF485 Silent p.Y130Y 0.49 TCGA-DD-AAD5-01 10 5238850 5238850 G A AKR1C4 Missense_Mutation p.R7H 0.60 tolerated(0.32) benign(0.004) TCGA-DD-AAD5-01 10 70646233 70646233 G C STOX1 Missense_Mutation p.R894T 0.21 deleterious(0.01) possibly_damaging(0.489) TCGA-DD-AAD5-01 10 95660950 95660950 C T SLC35G1 Silent p.V267V 0.17 TCGA-DD-AAD5-01 10 97919710 97919710 A G ZNF518A RNA 0.05 TCGA-DD-AAD5-01 11 101344488 101344488 G T TRPC6 Missense_Mutation p.D587E 0.34 tolerated(0.5) possibly_damaging(0.749) TCGA-DD-AAD5-01 11 113650543 113650543 T C CLDN25 Missense_Mutation p.V9A 0.28 tolerated(0.68) benign(0.009) TCGA-DD-AAD5-01 11 133799662 133799662 G T IGSF9B Missense_Mutation p.A512D 0.23 deleterious(0) probably_damaging(0.923) TCGA-DD-AAD5-01 11 16776719 16776719 T G C11orf58 3'UTR 0.27 TCGA-DD-AAD5-01 11 18787389 18787389 C T PTPN5 Missense_Mutation p.G21E 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DD-AAD5-01 11 46765632 46765633 - GGA CKAP5 In_Frame_Ins p.S2013dup 0.37 TCGA-DD-AAD5-01 11 61731676 61731676 T C BEST1 3'UTR 0.23 TCGA-DD-AAD5-01 11 6291433 6291433 C T CCKBR Silent p.R173R 0.34 TCGA-DD-AAD5-01 11 64110657 64110657 C T CCDC88B Missense_Mutation p.R357W 0.46 deleterious(0) probably_damaging(0.976) TCGA-DD-AAD5-01 11 66114190 66114190 A T B3GNT1 Missense_Mutation p.V276E 0.33 deleterious(0) benign(0.173) TCGA-DD-AAD5-01 11 71725431 71725431 C T NUMA1 Missense_Mutation p.E1040K 0.40 probably_damaging(0.998) TCGA-DD-AAD5-01 11 74058249 74058249 C T PGM2L1 Missense_Mutation p.D295N 0.23 deleterious(0) probably_damaging(0.999) TCGA-DD-AAD5-01 11 74168597 74168597 G A KCNE3 Silent p.T4T 0.30 TCGA-DD-AAD5-01 11 7647047 7647070 GATGCAGAAATTGAGCGTCTGCAC - PPFIBP2 In_Frame_Del p.D251_H258del 0.17 TCGA-DD-AAD5-01 11 77386183 77386183 G A RSF1 Missense_Mutation p.R1154W 0.06 deleterious(0) probably_damaging(0.947) TCGA-DD-AAD5-01 12 104474581 104474581 T - HCFC2 Frame_Shift_Del p.H248Ifs*6 0.22 TCGA-DD-AAD5-01 12 122260499 122260499 G T SETD1B Silent p.P1295P 0.30 TCGA-DD-AAD5-01 12 132589821 132589821 A T EP400NL Missense_Mutation p.E287V 0.31 deleterious_low_confidence(0) possibly_damaging(0.84) TCGA-DD-AAD5-01 12 55420588 55420588 A G NEUROD4 Missense_Mutation p.K122R 0.26 deleterious(0) probably_damaging(1) TCGA-DD-AAD5-01 12 71016198 71016198 G C PTPRB Missense_Mutation p.T227S 0.24 tolerated_low_confidence(0.09) benign(0.108) TCGA-DD-AAD5-01 12 93164070 93164070 A T PLEKHG7 3'UTR 0.38 TCGA-DD-AAD5-01 12 93164074 93164074 T A PLEKHG7 3'UTR 0.37 TCGA-DD-AAD5-01 12 96384225 96384225 T C HAL Silent p.L267L 0.32 TCGA-DD-AAD5-01 13 100635334 100635334 G T ZIC2 Missense_Mutation p.G339V 0.45 deleterious(0) probably_damaging(0.932) TCGA-DD-AAD5-01 13 113835450 113835450 C T PCID2 Missense_Mutation p.M314I 0.39 deleterious(0.02) benign(0.237) TCGA-DD-AAD5-01 13 113975881 113975881 T G LAMP1 Missense_Mutation p.F318C 0.10 deleterious(0) probably_damaging(0.98) TCGA-DD-AAD5-01 13 113975888 113975888 T - LAMP1 Frame_Shift_Del p.A321Pfs*63 0.10 TCGA-DD-AAD5-01 13 25433293 25433293 C T RNF17 Silent p.G1255G 0.38 TCGA-DD-AAD5-01 13 33629230 33629230 C G KL Silent p.S459S 0.21 TCGA-DD-AAD5-01 13 53039581 53039581 C G CKAP2 Missense_Mutation p.A487G 0.26 deleterious(0.02) probably_damaging(0.975) TCGA-DD-AAD5-01 14 106667847 106667847 C A IGHV3-20 Missense_Mutation p.G29C 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.511) TCGA-DD-AAD5-01 14 39868982 39868982 A T FBXO33 Missense_Mutation p.V469E 0.43 deleterious(0) probably_damaging(0.96) TCGA-DD-AAD5-01 14 48143777 48143777 C A MDGA2 Missense_Mutation p.G75C 0.24 tolerated_low_confidence(0.08) possibly_damaging(0.701) TCGA-DD-AAD5-01 14 51079994 51079994 T C ATL1 Silent p.V216V 0.15 TCGA-DD-AAD5-01 14 71479802 71479802 A G PCNX Missense_Mutation p.Y960C 0.41 tolerated(0.18) benign(0.375) TCGA-DD-AAD5-01 14 71479827 71479827 A G PCNX Silent p.Q968Q 0.41 TCGA-DD-AAD5-01 14 77297607 77297607 G A C14orf166B Missense_Mutation p.M93I 0.48 tolerated(0.12) benign(0.001) TCGA-DD-AAD5-01 15 22368941 22368941 C T OR4M2 Silent p.L122L 0.36 TCGA-DD-AAD5-01 15 34517257 34517257 C T EMC4 5'UTR 0.26 TCGA-DD-AAD5-01 15 43446911 43446911 T - TMEM62 Frame_Shift_Del p.K356Rfs*7 0.23 TCGA-DD-AAD5-01 16 1961878 1961878 T C HS3ST6 Missense_Mutation p.S217G 0.40 deleterious(0.01) probably_damaging(0.988) TCGA-DD-AAD5-01 16 29001280 29001280 G T LAT Nonsense_Mutation p.E253* 0.21 TCGA-DD-AAD5-01 16 29998697 29998697 G T TAOK2 Missense_Mutation p.R1035L 0.34 tolerated_low_confidence(0.15) benign(0.001) TCGA-DD-AAD5-01 16 50357578 50357578 A T BRD7 Missense_Mutation p.Y455N 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AAD5-01 16 53307551 53307551 T A CHD9 Silent p.P1577P 0.32 TCGA-DD-AAD5-01 16 57805304 57805304 T C KIFC3 Missense_Mutation p.M191V 0.34 tolerated(0.67) benign(0) TCGA-DD-AAD5-01 16 70367537 70367537 A T DDX19B 3'UTR 0.08 TCGA-DD-AAD5-01 16 89977033 89977033 C T TCF25 Missense_Mutation p.L612F 0.22 deleterious(0.01) benign(0.03) TCGA-DD-AAD5-01 17 16615002 16615002 G A CCDC144A Missense_Mutation p.E530K 0.53 tolerated(0.08) possibly_damaging(0.636) TCGA-DD-AAD5-01 17 18022452 18022473 GCCGCCGTGGCTACGGCCGCCT - MYO15A Frame_Shift_Del p.R114Gfs*323 0.54 TCGA-DD-AAD5-01 17 33679852 33679852 T A SLFN11 Missense_Mutation p.K743N 0.26 tolerated(0.13) benign(0.007) TCGA-DD-AAD5-01 17 44111609 44111609 T C KANSL1 Missense_Mutation p.I862V 0.19 deleterious(0.01) possibly_damaging(0.832) TCGA-DD-AAD5-01 17 48632950 48632950 A G SPATA20 Missense_Mutation p.Y779C 0.19 deleterious(0) probably_damaging(0.996) TCGA-DD-AAD5-01 17 48653617 48653617 C T CACNA1G Silent p.T618T 0.30 TCGA-DD-AAD5-01 17 48696133 48696133 G A CACNA1G Missense_Mutation p.V1849M 0.18 deleterious(0) probably_damaging(1) TCGA-DD-AAD5-01 17 7574006 7574006 A C TP53 Missense_Mutation p.F341V 0.68 deleterious(0.02) possibly_damaging(0.5) TCGA-DD-AAD5-01 17 76411090 76411090 G A PGS1 Silent p.L511L 0.43 TCGA-DD-AAD5-01 18 25589824 25589824 T G CDH2 Silent p.R187R 0.31 TCGA-DD-AAD5-01 18 34340640 34340640 G A FHOD3 Missense_Mutation p.A1324T 0.31 tolerated(0.07) probably_damaging(0.946) TCGA-DD-AAD5-01 18 3499038 3499038 C T DLGAP1 3'UTR 0.50 TCGA-DD-AAD5-01 19 13006809 13006810 - G GCDH Frame_Shift_Ins p.E172Gfs*16 0.20 TCGA-DD-AAD5-01 19 21216318 21216318 C T ZNF430 Silent p.C51C 0.37 TCGA-DD-AAD5-01 19 37440949 37440949 A T ZNF568 Missense_Mutation p.R298S 0.12 deleterious(0) probably_damaging(1) TCGA-DD-AAD5-01 19 38187639 38187639 G A ZNF607 3'UTR 0.44 TCGA-DD-AAD5-01 19 38995678 38995678 A G RYR1 Missense_Mutation p.N2756S 0.27 benign(0.013) TCGA-DD-AAD5-01 19 38997118 38997118 C A RYR1 Missense_Mutation p.A2875E 0.33 benign(0.136) TCGA-DD-AAD5-01 19 3942171 3942171 C T NMRK2 Missense_Mutation p.S198L 0.08 tolerated_low_confidence(0.6) benign(0.001) TCGA-DD-AAD5-01 19 41355743 41355743 T C CYP2A6 Missense_Mutation p.D108G 0.24 benign(0.103) TCGA-DD-AAD5-01 19 42796509 42796509 G A CIC Silent p.A1022A 0.40 TCGA-DD-AAD5-01 19 53856625 53856625 A G ZNF845 Silent p.Q899Q 0.34 TCGA-DD-AAD5-01 1 109351498 109351498 A G STXBP3 Nonstop_Mutation p.*593Wext*16 0.40 TCGA-DD-AAD5-01 1 111059915 111059915 T C KCNA10 Missense_Mutation p.K499E 0.20 deleterious_low_confidence(0.05) benign(0.219) TCGA-DD-AAD5-01 1 1119315 1119315 G A TTLL10 Silent p.P368P 0.33 TCGA-DD-AAD5-01 1 147380358 147380358 C A GJA8 Nonsense_Mutation p.Y92* 0.71 TCGA-DD-AAD5-01 1 151701300 151701300 G A RIIAD1 Silent p.K89K 0.63 TCGA-DD-AAD5-01 1 152080637 152080637 G A TCHH Missense_Mutation p.R1686C 0.72 unknown(0) TCGA-DD-AAD5-01 1 179993651 179993651 T A CEP350 Missense_Mutation p.S1162T 0.12 probably_damaging(0.998) TCGA-DD-AAD5-01 1 181705445 181705445 G A CACNA1E Silent p.L1099L 0.11 TCGA-DD-AAD5-01 1 223568318 223568318 A T C1orf65 Missense_Mutation p.M501L 0.09 tolerated(0.33) benign(0.014) TCGA-DD-AAD5-01 1 228467638 228467638 G A OBSCN Missense_Mutation p.D2934N 0.07 benign(0.18) TCGA-DD-AAD5-01 1 27089690 27089690 G C ARID1A Silent p.G882G 0.36 TCGA-DD-AAD5-01 1 28863259 28863259 G A RCC1 Missense_Mutation p.G344E 0.37 deleterious(0) probably_damaging(1) TCGA-DD-AAD5-01 1 33147469 33147485 GTTGAAAGAAAAAGTTT - SYNC Intron 0.14 TCGA-DD-AAD5-01 1 38227675 38227675 C T EPHA10 Silent p.Q84Q 0.42 TCGA-DD-AAD5-01 1 57320606 57320606 T A C8A Nonsense_Mutation p.L11* 0.30 TCGA-DD-AAD5-01 1 63050360 63050360 A T DOCK7 Intron 0.43 TCGA-DD-AAD5-01 1 65310503 65310503 T A JAK1 Missense_Mutation p.S729C 0.43 deleterious(0.02) possibly_damaging(0.708) TCGA-DD-AAD5-01 1 86948018 86948018 C A CLCA1 Missense_Mutation p.R230S 0.38 tolerated(0.97) benign(0.001) TCGA-DD-AAD5-01 1 94522310 94522310 G A ABCA4 Silent p.A743A 0.21 TCGA-DD-AAD5-01 20 47682737 47682737 T G CSE1L Missense_Mutation p.D79E 0.31 tolerated(0.16) possibly_damaging(0.777) TCGA-DD-AAD5-01 20 50803417 50803417 A C ZFP64 Silent p.T80T 0.33 TCGA-DD-AAD5-01 20 56138179 56138179 G A PCK1 Missense_Mutation p.G236S 0.40 deleterious(0) probably_damaging(1) TCGA-DD-AAD5-01 20 57766466 57766466 C A ZNF831 Missense_Mutation p.T131K 0.32 deleterious(0.02) benign(0.197) TCGA-DD-AAD5-01 21 34053836 34053864 TGCATATATCTTACTGATTGAATCACCAT A SYNJ1 Frame_Shift_Del p.N471Mfs*12 0.32 TCGA-DD-AAD5-01 21 34805131 34805131 A C IFNGR2 Missense_Mutation p.K278Q 0.18 deleterious(0) probably_damaging(1) TCGA-DD-AAD5-01 21 37617605 37617605 C T DOPEY2 Silent p.H1109H 0.20 TCGA-DD-AAD5-01 22 18324653 18324653 C T MICAL3 Silent p.E912E 0.46 TCGA-DD-AAD5-01 22 28693650 28693654 CAGGG - TTC28 Frame_Shift_Del p.A239Efs*29 0.26 TCGA-DD-AAD5-01 22 28693694 28693697 CAAT - TTC28 Frame_Shift_Del p.I225Afs*7 0.27 TCGA-DD-AAD5-01 22 39918368 39918368 G A ATF4 Missense_Mutation p.V273I 0.30 tolerated(0.25) benign(0.006) TCGA-DD-AAD5-01 22 42341233 42341233 T C CENPM Silent p.T102T 0.23 TCGA-DD-AAD5-01 2 110332246 110332246 C A SEPT10 Missense_Mutation p.R171L 0.32 deleterious(0) possibly_damaging(0.851) TCGA-DD-AAD5-01 2 179594139 179594139 G A TTN Silent p.T6248T 0.17 TCGA-DD-AAD5-01 2 208633107 208633107 C T FZD5 Silent p.L119L 0.50 TCGA-DD-AAD5-01 2 228401645 228401679 TGCTGCTGGTCCTTCTGTGGCATCTTCTACAAACC AGCAG AGFG1 In_Frame_Del p.G465_P474del 0.23 TCGA-DD-AAD5-01 2 26536264 26536264 G T GPR113 Missense_Mutation p.A485D 0.37 tolerated(0.13) benign(0.004) TCGA-DD-AAD5-01 2 46988436 46988436 G T SOCS5 3'UTR 0.33 TCGA-DD-AAD5-01 2 51255333 51255333 G A NRXN1 Silent p.L27L 0.38 TCGA-DD-AAD5-01 2 63206420 63206420 A G EHBP1 Missense_Mutation p.Y888C 0.37 deleterious_low_confidence(0.05) probably_damaging(0.971) TCGA-DD-AAD5-01 2 64321687 64321687 T C PELI1 3'UTR 0.34 TCGA-DD-AAD5-01 2 70123665 70123665 G C SNRNP27 Missense_Mutation p.E85Q 0.22 tolerated(0.17) unknown(0) TCGA-DD-AAD5-01 2 71591128 71591128 C G ZNF638 Missense_Mutation p.S488C 0.38 deleterious(0) probably_damaging(0.999) TCGA-DD-AAD5-01 2 86718398 86718413 GGTAAAAATAGCACCA CCG KDM3A Splice_Site p.X1295_splice 0.20 TCGA-DD-AAD5-01 2 99767195 99767195 A G C2ORF15 Silent p.T92T 0.28 TCGA-DD-AAD5-01 2 99976706 99976706 G A EIF5B Missense_Mutation p.D15N 0.32 unknown(0) TCGA-DD-AAD5-01 3 122133743 122133743 A G WDR5B Silent p.P211P 0.37 TCGA-DD-AAD5-01 3 125195601 125195601 C A SNX4 Splice_Site p.X243_splice 0.31 TCGA-DD-AAD5-01 3 126736619 126736619 G T PLXNA1 Missense_Mutation p.G1182C 0.40 deleterious(0) probably_damaging(1) TCGA-DD-AAD5-01 3 134278032 134278032 G A CEP63 Missense_Mutation p.E572K 0.24 tolerated(0.3) benign(0.053) TCGA-DD-AAD5-01 3 138153695 138153695 C G ESYT3 Missense_Mutation p.R19G 0.33 tolerated(0.43) benign(0.001) TCGA-DD-AAD5-01 3 140409822 140409822 T C TRIM42 Missense_Mutation p.C625R 0.28 deleterious(0) probably_damaging(1) TCGA-DD-AAD5-01 3 142985470 142985470 G T SLC9A9 3'UTR 0.22 TCGA-DD-AAD5-01 3 151160830 151160830 G A IGSF10 Missense_Mutation p.P1969S 0.22 deleterious(0) probably_damaging(0.999) TCGA-DD-AAD5-01 3 158407956 158407956 G C GFM1 Missense_Mutation p.L638F 0.30 tolerated(1) benign(0.002) TCGA-DD-AAD5-01 3 172479465 172479468 GAAT - ECT2 Frame_Shift_Del p.E252Rfs*24 0.47 TCGA-DD-AAD5-01 3 197803763 197803763 G T ANKRD18DP RNA 0.42 TCGA-DD-AAD5-01 3 25835810 25835810 G C OXSM Missense_Mutation p.C402S 0.36 deleterious(0) probably_damaging(0.996) TCGA-DD-AAD5-01 3 38049272 38049272 G A PLCD1 Nonsense_Mutation p.Q776* 0.40 TCGA-DD-AAD5-01 3 65456162 65456162 G C MAGI1 Intron 0.33 TCGA-DD-AAD5-01 4 11401299 11401299 A T HS3ST1 Missense_Mutation p.W111R 0.52 tolerated(0.21) benign(0.001) TCGA-DD-AAD5-01 4 123818824 123818824 T C NUDT6 Missense_Mutation p.M170V 0.39 tolerated(0.19) benign(0.143) TCGA-DD-AAD5-01 4 169815771 169815771 T C PALLD Silent p.G714G 0.23 TCGA-DD-AAD5-01 4 187541512 187541512 A G FAT1 Silent p.D2076D 0.49 TCGA-DD-AAD5-01 4 30723995 30723995 G T PCDH7 Missense_Mutation p.L317F 0.42 deleterious(0) possibly_damaging(0.904) TCGA-DD-AAD5-01 5 137801456 137801456 C G EGR1 Silent p.A2A 0.15 TCGA-DD-AAD5-01 5 140262072 140262072 C A PCDHA13 Missense_Mutation p.D73E 0.50 tolerated_low_confidence(0.06) benign(0.008) TCGA-DD-AAD5-01 5 150227517 150227517 C T IRGM 5'UTR 0.45 TCGA-DD-AAD5-01 5 171533682 171533682 G A STK10 Missense_Mutation p.R244W 0.17 deleterious(0) probably_damaging(0.999) TCGA-DD-AAD5-01 5 175959156 175959156 C A RNF44 Missense_Mutation p.R49L 0.13 tolerated_low_confidence(0.06) benign(0) TCGA-DD-AAD5-01 5 179260608 179260608 T A SQSTM1 Missense_Mutation p.C331S 0.11 tolerated(0.68) benign(0.002) TCGA-DD-AAD5-01 5 179696379 179696380 AT - MAPK9 Frame_Shift_Del p.N51Sfs*22 0.15 TCGA-DD-AAD5-01 5 5462837 5462838 - A KIAA0947 Frame_Shift_Ins p.N1132Kfs*29 0.13 TCGA-DD-AAD5-01 5 56233448 56233448 C A MIER3 Silent p.V131V 0.52 TCGA-DD-AAD5-01 5 82940201 82940201 A G HAPLN1 Silent p.C252C 0.10 TCGA-DD-AAD5-01 5 90002212 90002212 G A GPR98 Splice_Site p.X2910_splice 0.18 TCGA-DD-AAD5-01 5 96098095 96098096 TT A ERAP1 3'UTR 0.09 TCGA-DD-AAD5-01 6 100006184 100006184 T C CCNC Intron 0.22 TCGA-DD-AAD5-01 6 1611582 1611582 C G FOXC1 Missense_Mutation p.P301R 0.54 tolerated(0.25) benign(0.021) TCGA-DD-AAD5-01 6 3273355 3273355 G A SLC22A23 Silent p.H665H 0.28 TCGA-DD-AAD5-01 6 3273357 3273357 G T SLC22A23 Missense_Mutation p.H665N 0.28 deleterious(0.02) benign(0.297) TCGA-DD-AAD5-01 6 35888893 35888893 C A SRPK1 5'UTR 0.34 TCGA-DD-AAD5-01 6 43307288 43307288 G A ZNF318 Missense_Mutation p.S1483F 0.33 possibly_damaging(0.857) TCGA-DD-AAD5-01 6 43487179 43487179 G T POLR1C Splice_Site p.X83_splice 0.33 TCGA-DD-AAD5-01 6 51524083 51524087 CTGTC - PKHD1 Frame_Shift_Del p.D3613* 0.25 TCGA-DD-AAD5-01 6 6145859 6145859 G A F13A1 Missense_Mutation p.S731F 0.26 deleterious_low_confidence(0.01) benign(0.172) TCGA-DD-AAD5-01 6 80228799 80228799 T C LCA5 5'UTR 0.33 TCGA-DD-AAD5-01 7 102953297 102953297 A C PMPCB 3'UTR 0.40 TCGA-DD-AAD5-01 7 131849014 131849014 A C PLXNA4 Missense_Mutation p.C1463G 0.33 tolerated(0.14) probably_damaging(0.999) TCGA-DD-AAD5-01 7 134850090 134850090 C T TMEM140 3'UTR 0.45 TCGA-DD-AAD5-01 7 135412214 135412214 G C SLC13A4 Missense_Mutation p.R11G 0.34 deleterious(0) unknown(0) TCGA-DD-AAD5-01 7 149490519 149490519 T G SSPO RNA 0.26 TCGA-DD-AAD5-01 7 31139807 31139807 A G ADCYAP1R1 Silent p.E371E 0.20 TCGA-DD-AAD5-01 7 64864654 64864654 G A ZNF92 Missense_Mutation p.D543N 0.33 deleterious(0.02) benign(0.015) TCGA-DD-AAD5-01 7 77256222 77256222 A G PTPN12 Missense_Mutation p.Y409C 0.29 deleterious(0) probably_damaging(0.984) TCGA-DD-AAD5-01 8 100123343 100123343 A T VPS13B Nonsense_Mutation p.R200* 0.25 TCGA-DD-AAD5-01 8 106811123 106811123 C G ZFPM2 Missense_Mutation p.T304S 0.04 tolerated(0.76) possibly_damaging(0.654) TCGA-DD-AAD5-01 8 146107094 146107094 G T ZNF250 Missense_Mutation p.H497N 0.56 deleterious(0) probably_damaging(0.913) TCGA-DD-AAD5-01 8 38947598 38947598 G A ADAM9 Missense_Mutation p.V701I 0.52 tolerated(0.74) possibly_damaging(0.701) TCGA-DD-AAD5-01 8 55014364 55014364 G A LYPLA1 Missense_Mutation p.S7L 0.37 deleterious(0) possibly_damaging(0.45) TCGA-DD-AAD5-01 8 67578049 67578049 T C VCPIP1 Missense_Mutation p.Q382R 0.34 deleterious(0) possibly_damaging(0.889) TCGA-DD-AAD5-01 8 69552726 69552726 C T C8orf34 Silent p.N407N 0.50 TCGA-DD-AAD5-01 8 77768445 77768445 A T ZFHX4 Silent p.T3096T 0.36 TCGA-DD-AAD5-01 8 99142195 99142205 TGAAACTATAG - POP1 Splice_Site p.X163_splice 0.09 TCGA-DD-AAD5-01 9 124989224 124989224 A G LHX6 Missense_Mutation p.V81A 0.36 tolerated(0.18) benign(0.041) TCGA-DD-AAD5-01 9 135278147 135278147 T - TTF1 Frame_Shift_Del p.K21Sfs*23 0.23 TCGA-DD-AAD5-01 9 19056319 19056319 G C HAUS6 3'UTR 0.31 TCGA-DD-AAD5-01 9 21994138 21994138 C G RP11-149I2.4 5'Flank 0.29 TCGA-DD-AAD5-01 9 35738529 35738530 - G GBA2 Frame_Shift_Ins p.G683Afs*32 0.25 TCGA-DD-AAD5-01 9 75406907 75406907 G C TMC1 Missense_Mutation p.G444R 0.34 deleterious(0) possibly_damaging(0.563) TCGA-DD-AAD5-01 X 2408700 2408700 C A ZBED1 Missense_Mutation p.A21S 0.21 tolerated(0.08) probably_damaging(0.999) TCGA-DD-AAD5-01 X 70346907 70346907 G T MED12 Missense_Mutation p.C925F 0.67 benign(0.368) TCGA-DD-AAD6-01 10 101491746 101491746 G A COX15 Silent p.L21L 0.52 TCGA-DD-AAD6-01 10 1405703 1405703 G T ADARB2 Missense_Mutation p.H199Q 0.43 tolerated(0.06) benign(0.009) TCGA-DD-AAD6-01 10 17087153 17087153 C A CUBN Silent p.T1175T 0.39 TCGA-DD-AAD6-01 10 17113590 17113590 T G CUBN Missense_Mutation p.E820D 0.41 tolerated(0.45) benign(0.033) TCGA-DD-AAD6-01 10 6245261 6245261 T C PFKFB3 Missense_Mutation p.I13T 0.42 possibly_damaging(0.849) TCGA-DD-AAD6-01 10 69407267 69407267 G A CTNNA3 Missense_Mutation p.S2L 0.46 deleterious_low_confidence(0) benign(0.307) TCGA-DD-AAD6-01 10 75757914 75757914 G T VCL 5'UTR 0.47 TCGA-DD-AAD6-01 10 94373259 94373259 A T KIF11 Missense_Mutation p.R305S 0.45 deleterious(0) possibly_damaging(0.67) TCGA-DD-AAD6-01 10 96796925 96796925 G C CYP2C8 Missense_Mutation p.S478C 0.35 tolerated(0.08) possibly_damaging(0.537) TCGA-DD-AAD6-01 11 116701532 116701532 G A APOC3 Silent p.Q33Q 0.06 TCGA-DD-AAD6-01 11 117651257 117651257 C T DSCAML1 Silent p.A165A 0.70 TCGA-DD-AAD6-01 11 63765004 63765004 A G OTUB1 Missense_Mutation p.I268V 0.73 deleterious(0.04) benign(0.355) TCGA-DD-AAD6-01 12 103310947 103310947 C A PAH 5'UTR 0.37 TCGA-DD-AAD6-01 12 11061798 11061798 C A TAS2R13 Missense_Mutation p.D34Y 0.40 deleterious(0.03) probably_damaging(0.976) TCGA-DD-AAD6-01 12 118577335 118577335 T A PEBP1 Missense_Mutation p.S109T 0.41 deleterious(0) benign(0.174) TCGA-DD-AAD6-01 12 121880429 121880429 G A KDM2B Missense_Mutation p.R939W 0.06 deleterious_low_confidence(0) possibly_damaging(0.732) TCGA-DD-AAD6-01 12 32134716 32134716 G A KIAA1551 Missense_Mutation p.R276K 0.31 tolerated(0.11) probably_damaging(0.993) TCGA-DD-AAD6-01 12 43884211 43884211 T G ADAMTS20 Missense_Mutation p.K368N 0.44 deleterious(0) benign(0.105) TCGA-DD-AAD6-01 12 49433090 49433090 G A KMT2D Silent p.L2761L 0.50 TCGA-DD-AAD6-01 12 52800077 52800077 C A KRT82 5'UTR 0.56 TCGA-DD-AAD6-01 12 52979915 52979915 A G KRT72 Missense_Mutation p.F463L 0.32 tolerated_low_confidence(0.44) probably_damaging(0.986) TCGA-DD-AAD6-01 12 70724084 70724084 A G CNOT2 Missense_Mutation p.N135S 0.36 tolerated(0.31) benign(0.005) TCGA-DD-AAD6-01 12 88522769 88522769 T C CEP290 Missense_Mutation p.D299G 0.47 probably_damaging(0.999) TCGA-DD-AAD6-01 13 27847663 27847663 T C RASL11A 3'UTR 0.47 TCGA-DD-AAD6-01 14 102453099 102453099 A G DYNC1H1 Missense_Mutation p.K846R 0.76 benign(0.076) TCGA-DD-AAD6-01 14 53185036 53185036 A G PSMC6 Silent p.P241P 0.46 TCGA-DD-AAD6-01 15 27216601 27216601 G A GABRG3 5'UTR 0.40 TCGA-DD-AAD6-01 15 45365861 45365861 A G SORD 3'UTR 0.51 TCGA-DD-AAD6-01 15 58000999 58000999 A C POLR2M Missense_Mutation p.E67D 0.40 tolerated(0.11) benign(0.117) TCGA-DD-AAD6-01 16 15797859 15797859 C A MYH11 Missense_Mutation p.A1977S 0.37 benign(0.001) TCGA-DD-AAD6-01 16 29676336 29676336 T G SPN 3'UTR 0.39 TCGA-DD-AAD6-01 16 30594587 30594587 G A ZNF785 Missense_Mutation p.P171L 0.42 deleterious(0) probably_damaging(0.97) TCGA-DD-AAD6-01 16 67209051 67209051 G T NOL3 3'UTR 0.40 TCGA-DD-AAD6-01 16 69364961 69364961 T C COG8 Silent p.L540L 0.44 TCGA-DD-AAD6-01 16 72141647 72141647 C A DHX38 Silent p.I971I 0.55 TCGA-DD-AAD6-01 16 84227641 84227641 G A ADAD2 Missense_Mutation p.G150R 0.48 tolerated_low_confidence(0.29) benign(0.006) TCGA-DD-AAD6-01 16 84402321 84402321 G A ATP2C2 Splice_Site p.X33_splice 0.44 TCGA-DD-AAD6-01 17 16676815 16676815 T C CCDC144A Missense_Mutation p.L1419P 0.78 deleterious_low_confidence(0) unknown(0) TCGA-DD-AAD6-01 17 21319861 21319861 G A KCNJ12 Missense_Mutation p.G403S 0.17 tolerated(0.77) benign(0.001) TCGA-DD-AAD6-01 17 26116637 26116637 G A NOS2 Missense_Mutation p.T63M 0.43 tolerated(0.15) benign(0.009) TCGA-DD-AAD6-01 17 32955721 32955721 C A TMEM132E Missense_Mutation p.P290T 0.39 tolerated(0.42) benign(0.001) TCGA-DD-AAD6-01 17 39727697 39727697 T A KRT9 Missense_Mutation p.N183I 0.28 tolerated(0.49) possibly_damaging(0.644) TCGA-DD-AAD6-01 17 67013796 67013796 C G ABCA9 Splice_Site p.X967_splice 0.13 TCGA-DD-AAD6-01 17 71412072 71412072 A G SDK2 Missense_Mutation p.V749A 0.19 tolerated(0.09) possibly_damaging(0.491) TCGA-DD-AAD6-01 17 74730965 74730965 T C SRSF2 3'UTR 0.41 TCGA-DD-AAD6-01 17 79682596 79682596 A T SLC25A10 Missense_Mutation p.E101V 0.69 tolerated(0.08) benign(0.038) TCGA-DD-AAD6-01 17 80041199 80041199 T G FASN Missense_Mutation p.Q1815P 0.27 tolerated(0.05) benign(0.433) TCGA-DD-AAD6-01 18 224989 224989 T C THOC1 Missense_Mutation p.I381M 0.79 tolerated(0.12) possibly_damaging(0.789) TCGA-DD-AAD6-01 19 14165531 14165531 G A PALM3 Missense_Mutation p.S303L 0.33 tolerated(0.15) benign(0.041) TCGA-DD-AAD6-01 19 16683112 16683112 C T SLC35E1 Missense_Mutation p.G22S 0.56 tolerated(1) unknown(0) TCGA-DD-AAD6-01 19 17945987 17945987 C T JAK3 Missense_Mutation p.R651Q 0.32 deleterious(0) possibly_damaging(0.605) TCGA-DD-AAD6-01 19 3281279 3281279 A G CELF5 Missense_Mutation p.Q229R 0.79 deleterious(0.04) benign(0.106) TCGA-DD-AAD6-01 19 42853808 42853808 A G MEGF8 Missense_Mutation p.E752G 0.40 deleterious(0.01) benign(0.149) TCGA-DD-AAD6-01 19 50060189 50060189 G A NOSIP Silent p.P160P 0.36 TCGA-DD-AAD6-01 19 52496449 52496449 T C ZNF615 Missense_Mutation p.N638S 0.36 tolerated(1) benign(0.035) TCGA-DD-AAD6-01 19 53612357 53612357 C A ZNF415 Missense_Mutation p.C314F 0.41 tolerated(0.49) benign(0.272) TCGA-DD-AAD6-01 19 55692973 55692973 G A PTPRH 3'UTR 0.24 TCGA-DD-AAD6-01 19 57868571 57868571 G T ZNF304 Missense_Mutation p.R445I 0.41 deleterious(0) possibly_damaging(0.873) TCGA-DD-AAD6-01 19 6677908 6677908 A G C3 Silent p.F1659F 0.76 TCGA-DD-AAD6-01 19 9091765 9091765 A T MUC16 Nonsense_Mutation p.L17* 0.75 TCGA-DD-AAD6-01 1 100614954 100614954 T C LRRC39 Silent p.T330T 0.45 TCGA-DD-AAD6-01 1 10412743 10412743 C T KIF1B Missense_Mutation p.S1289F 0.74 deleterious(0) possibly_damaging(0.902) TCGA-DD-AAD6-01 1 11087077 11087077 A C MASP2 Missense_Mutation p.S642R 0.90 tolerated(0.4) benign(0.042) TCGA-DD-AAD6-01 1 120293471 120293471 C A HMGCS2 Missense_Mutation p.R494L 0.37 tolerated(0.05) benign(0.36) TCGA-DD-AAD6-01 1 1217532 1217532 G A SCNN1D Intron 0.45 TCGA-DD-AAD6-01 1 176563805 176563805 C T PAPPA2 Silent p.S355S 0.48 TCGA-DD-AAD6-01 1 17975056 17975056 G A ARHGEF10L Silent p.E760E 0.81 TCGA-DD-AAD6-01 1 181687238 181687238 C A CACNA1E Missense_Mutation p.L525M 0.52 tolerated(0.07) possibly_damaging(0.887) TCGA-DD-AAD6-01 1 185113145 185113145 T A TRMT1L Silent p.P224P 0.42 TCGA-DD-AAD6-01 1 200377908 200377908 T G ZNF281 Missense_Mutation p.K309T 0.52 deleterious(0) probably_damaging(0.995) TCGA-DD-AAD6-01 1 225605750 225605750 A C LBR Missense_Mutation p.V258G 0.03 deleterious(0.01) possibly_damaging(0.744) TCGA-DD-AAD6-01 1 226923497 226923497 G T ITPKB Missense_Mutation p.P555T 0.37 tolerated_low_confidence(0.09) benign(0.003) TCGA-DD-AAD6-01 1 236711711 236711711 A C LGALS8 3'UTR 0.62 TCGA-DD-AAD6-01 1 241262053 241262053 C T RGS7 Missense_Mutation p.V30I 0.40 tolerated(0.85) benign(0.07) TCGA-DD-AAD6-01 1 65243500 65243500 T A RAVER2 Missense_Mutation p.C171S 0.35 tolerated(0.09) possibly_damaging(0.571) TCGA-DD-AAD6-01 20 22562785 22562785 C A FOXA2 Silent p.P365P 0.35 TCGA-DD-AAD6-01 20 30730791 30730791 C T TM9SF4 Silent p.L179L 0.47 TCGA-DD-AAD6-01 20 3144887 3144887 C T LZTS3 3'UTR 0.33 TCGA-DD-AAD6-01 20 33585321 33585321 G T MYH7B Nonsense_Mutation p.E1251* 0.41 TCGA-DD-AAD6-01 20 36374896 36374896 A G CTNNBL1 Missense_Mutation p.N118S 0.45 deleterious(0.05) probably_damaging(0.999) TCGA-DD-AAD6-01 20 44592541 44592541 T A ZNF335 Silent p.P397P 0.56 TCGA-DD-AAD6-01 20 58489232 58489232 G A SYCP2 Missense_Mutation p.H237Y 0.29 tolerated(0.22) benign(0.002) TCGA-DD-AAD6-01 21 41163986 41163986 T A IGSF5 Missense_Mutation p.N336K 0.74 tolerated(0.44) possibly_damaging(0.727) TCGA-DD-AAD6-01 21 43523671 43523671 C T C21orf128 3'UTR 0.77 TCGA-DD-AAD6-01 22 21348001 21348001 G A LZTR1 Nonsense_Mutation p.W437* 0.10 TCGA-DD-AAD6-01 2 101883295 101883295 C G CNOT11 Missense_Mutation p.L398V 0.44 deleterious(0) probably_damaging(0.987) TCGA-DD-AAD6-01 2 179459324 179459324 A G TTN Silent p.N19299N 0.51 TCGA-DD-AAD6-01 2 189875435 189875435 G A COL3A1 Missense_Mutation p.R1358Q 0.34 unknown(0) TCGA-DD-AAD6-01 2 198353917 198353917 A C HSPD1 Missense_Mutation p.L342V 0.41 deleterious(0) benign(0.108) TCGA-DD-AAD6-01 2 203848487 203848487 A G CARF 3'UTR 0.39 TCGA-DD-AAD6-01 2 234421111 234421111 G C USP40 Intron 0.29 TCGA-DD-AAD6-01 2 27460591 27460591 A T CAD Silent p.A1523A 0.53 TCGA-DD-AAD6-01 2 31457421 31457421 C A EHD3 5'UTR 0.61 TCGA-DD-AAD6-01 2 44041655 44041655 G C ABCG5 Missense_Mutation p.L575V 0.41 tolerated(0.06) probably_damaging(0.997) TCGA-DD-AAD6-01 2 58386604 58386604 G C VRK2 Missense_Mutation p.D435H 0.39 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-DD-AAD6-01 2 61538926 61538926 G - USP34 Frame_Shift_Del p.P1221Lfs*4 0.28 TCGA-DD-AAD6-01 3 121206681 121206681 A G POLQ Silent p.N1699N 0.47 TCGA-DD-AAD6-01 3 123444795 123444795 C A MYLK Silent p.L549L 0.45 TCGA-DD-AAD6-01 3 145912237 145912237 G A PLSCR4 Silent p.F317F 0.45 TCGA-DD-AAD6-01 3 180666182 180666182 A T FXR1 Silent p.I106I 0.09 TCGA-DD-AAD6-01 3 41266090 41266289 3:41266090-41266289 - CTNNB1 large deletion p.X30_splice 0.41 TCGA-DD-AAD6-01 3 49737930 49737930 A T RNF123 Missense_Mutation p.K379M 0.24 deleterious(0) probably_damaging(0.962) TCGA-DD-AAD6-01 3 51746931 51746931 G A GRM2 Missense_Mutation p.G298E 0.22 deleterious(0) probably_damaging(0.994) TCGA-DD-AAD6-01 4 141555157 141555157 T C TBC1D9 Silent p.L897L 0.43 TCGA-DD-AAD6-01 4 144381524 144381524 A T GAB1 Missense_Mutation p.R593W 0.41 deleterious(0) probably_damaging(0.981) TCGA-DD-AAD6-01 4 162307202 162307202 G C FSTL5 Silent p.S747S 0.43 TCGA-DD-AAD6-01 4 175220276 175220276 G A CEP44 Missense_Mutation p.A2T 0.27 tolerated(0.07) probably_damaging(0.999) TCGA-DD-AAD6-01 4 42122083 42122083 T C BEND4 Missense_Mutation p.T459A 0.38 deleterious_low_confidence(0.01) probably_damaging(0.973) TCGA-DD-AAD6-01 4 48517192 48517192 A C FRYL Missense_Mutation p.I2597S 0.39 tolerated_low_confidence(0.83) benign(0.001) TCGA-DD-AAD6-01 4 5827327 5827327 T - CRMP1 Frame_Shift_Del p.A622Lfs*39 0.28 TCGA-DD-AAD6-01 4 74276072 74276073 AG - ALB Frame_Shift_Del p.R221Tfs*30 0.29 TCGA-DD-AAD6-01 4 74280766 74280766 A G ALB Missense_Mutation p.Y358C 0.44 deleterious(0) probably_damaging(0.997) TCGA-DD-AAD6-01 4 8594614 8594614 C A CPZ Silent p.A18A 0.33 TCGA-DD-AAD6-01 5 134871557 134871557 T C NEUROG1 5'UTR 0.40 TCGA-DD-AAD6-01 5 140958709 140958709 T C DIAPH1 Silent p.E293E 0.45 TCGA-DD-AAD6-01 5 147793761 147793761 A G FBXO38 Missense_Mutation p.I386V 0.47 tolerated(0.24) benign(0.005) TCGA-DD-AAD6-01 5 170738654 170738654 C A TLX3 3'UTR 0.42 TCGA-DD-AAD6-01 5 180040034 180040034 G A FLT4 Silent p.A1136A 0.37 TCGA-DD-AAD6-01 5 1802445 1802445 A - NDUFS6 Frame_Shift_Del p.D48Vfs*10 0.29 TCGA-DD-AAD6-01 5 34922835 34922835 T C BRIX1 Missense_Mutation p.C158R 0.35 deleterious(0) probably_damaging(0.999) TCGA-DD-AAD6-01 5 43245877 43245877 G T NIM1K 5'UTR 0.35 TCGA-DD-AAD6-01 5 56212656 56212656 T G SETD9 Missense_Mutation p.V276G 0.45 tolerated(0.07) probably_damaging(0.988) TCGA-DD-AAD6-01 6 144783861 144783861 G T UTRN Missense_Mutation p.E975D 0.41 tolerated(0.35) benign(0.142) TCGA-DD-AAD6-01 6 144808683 144808683 G T UTRN Splice_Site p.X1275_splice 0.45 TCGA-DD-AAD6-01 6 160114274 160114274 G A SOD2 5'UTR 0.47 TCGA-DD-AAD6-01 6 41900409 41900409 C T BYSL Missense_Mutation p.R427C 0.27 deleterious(0) probably_damaging(1) TCGA-DD-AAD6-01 6 44275036 44275036 T A AARS2 Silent p.T330T 0.34 TCGA-DD-AAD6-01 6 44275037 44275037 G A AARS2 Missense_Mutation p.T330I 0.33 deleterious(0) benign(0.405) TCGA-DD-AAD6-01 6 46190828 46190828 A G RCAN2 3'UTR 0.39 TCGA-DD-AAD6-01 6 46975013 46975013 A G GPR110 Missense_Mutation p.F837L 0.45 deleterious(0) possibly_damaging(0.706) TCGA-DD-AAD6-01 6 56494214 56494214 T C DST Missense_Mutation p.R900G 0.41 possibly_damaging(0.81) TCGA-DD-AAD6-01 7 107350597 107350597 C G SLC26A4 Missense_Mutation p.Q730E 0.45 tolerated(0.21) benign(0.002) TCGA-DD-AAD6-01 7 134874129 134874129 T C WDR91 Missense_Mutation p.T579A 0.38 deleterious(0.01) possibly_damaging(0.791) TCGA-DD-AAD6-01 7 154002579 154002579 C A DPP6 Intron 0.26 TCGA-DD-AAD6-01 7 20823935 20823935 G C SP8 Missense_Mutation p.P501A 0.26 tolerated_low_confidence(0.06) benign(0.001) TCGA-DD-AAD6-01 7 47333412 47333412 T C TNS3 Missense_Mutation p.N1231D 0.41 deleterious(0) probably_damaging(0.933) TCGA-DD-AAD6-01 7 73521439 73521439 C G LIMK1 Silent p.V327V 0.43 TCGA-DD-AAD6-01 7 75174049 75174049 T A HIP1 Missense_Mutation p.M904L 0.34 tolerated(0.05) benign(0.007) TCGA-DD-AAD6-01 7 95750471 95750471 A - SLC25A13 3'UTR 0.32 TCGA-DD-AAD6-01 8 124335222 124335222 T C ATAD2 Missense_Mutation p.I1363V 0.80 deleterious(0.03) possibly_damaging(0.668) TCGA-DD-AAD6-01 8 139263244 139263244 C A FAM135B Missense_Mutation p.A128S 0.15 tolerated(1) benign(0.1) TCGA-DD-AAD6-01 8 141745494 141745494 T C PTK2 Missense_Mutation p.N629S 0.70 tolerated(0.14) benign(0.242) TCGA-DD-AAD6-01 8 144918306 144918306 C T NRBP2 Silent p.A436A 0.27 TCGA-DD-AAD6-01 8 22102508 22102508 T C POLR3D 5'Flank 0.32 TCGA-DD-AAD6-01 8 86037111 86037111 A G LRRCC1 Silent p.S403S 0.77 TCGA-DD-AAD6-01 9 139733868 139733868 C A RABL6 Missense_Mutation p.A564E 0.67 tolerated_low_confidence(0.23) possibly_damaging(0.765) TCGA-DD-AAD6-01 9 139733888 139733888 A C RABL6 Missense_Mutation p.M571L 0.65 deleterious_low_confidence(0.02) benign(0) TCGA-DD-AAD6-01 9 21971108 21971108 C A CDKN2A Missense_Mutation p.D84Y 0.40 deleterious(0) probably_damaging(1) TCGA-DD-AAD6-01 9 33922747 33922747 A T UBAP2 Missense_Mutation p.L1068M 0.54 tolerated(0.05) unknown(0) TCGA-DD-AAD6-01 9 86590525 86590525 T C HNRNPK Intron 0.32 TCGA-DD-AAD6-01 9 87636505 87636505 A T NTRK2 3'UTR 0.43 TCGA-DD-AAD6-01 X 100911129 100911129 G T ARMCX2 Missense_Mutation p.N482K 0.87 deleterious(0.01) probably_damaging(0.997) TCGA-DD-AAD6-01 X 134305029 134305029 C A CT55 Missense_Mutation p.G23C 0.89 tolerated(0.1) benign(0.001) TCGA-DD-AAD6-01 X 46433359 46433359 G A CHST7 5'UTR 0.11 TCGA-DD-AAD8-01 10 50154082 50154082 T A WDFY4 Intron 0.79 TCGA-DD-AAD8-01 10 75620639 75620639 T C CAMK2G Missense_Mutation p.K57E 0.82 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-DD-AAD8-01 11 119290047 119290047 A T THY1 3'UTR 0.83 TCGA-DD-AAD8-01 11 56128125 56128125 G T OR8J1 Missense_Mutation p.V135L 0.59 tolerated(0.21) benign(0.191) TCGA-DD-AAD8-01 11 62124510 62124510 A G ASRGL1 Missense_Mutation p.M129V 0.03 tolerated(0.19) benign(0.042) TCGA-DD-AAD8-01 11 66053219 66053219 G T YIF1A Missense_Mutation p.F146L 0.31 deleterious(0) benign(0.346) TCGA-DD-AAD8-01 12 109017058 109017058 C T SELPLG Silent p.A358A 0.43 TCGA-DD-AAD8-01 12 50344973 50344973 T A AQP2 Silent p.A120A 0.49 TCGA-DD-AAD8-01 12 55615504 55615504 T A OR10A7 Silent p.T232T 0.34 TCGA-DD-AAD8-01 12 80935405 80935405 C T PTPRQ Missense_Mutation p.P1072S 0.12 deleterious(0) benign(0.206) TCGA-DD-AAD8-01 12 86199277 86199277 T C RASSF9 Missense_Mutation p.I171V 0.29 deleterious(0.04) possibly_damaging(0.452) TCGA-DD-AAD8-01 12 9230420 9230420 T G A2M Missense_Mutation p.Q1051H 0.29 deleterious(0.01) possibly_damaging(0.796) TCGA-DD-AAD8-01 13 111083045 111083045 A T COL4A2 Intron 0.65 TCGA-DD-AAD8-01 13 33338652 33338652 A T PDS5B Missense_Mutation p.S1182C 0.54 tolerated(0.09) possibly_damaging(0.621) TCGA-DD-AAD8-01 13 77671529 77671529 A C MYCBP2 Missense_Mutation p.Y3216D 0.30 probably_damaging(0.996) TCGA-DD-AAD8-01 13 78133957 78133957 G A SCEL Silent p.R60R 0.56 TCGA-DD-AAD8-01 14 23342538 23342538 C A LRP10 Missense_Mutation p.A33E 0.41 tolerated(1) benign(0.021) TCGA-DD-AAD8-01 14 24435501 24435501 C T DHRS4 Missense_Mutation p.P181S 0.47 tolerated(0.07) benign(0.414) TCGA-DD-AAD8-01 14 77895375 77895375 A C VIPAS39 Missense_Mutation p.F444V 0.49 tolerated(0.16) benign(0.008) TCGA-DD-AAD8-01 14 95677210 95677210 G C CLMN Silent p.G205G 0.27 TCGA-DD-AAD8-01 15 24928411 24928411 G A NPAP1 3'UTR 0.29 TCGA-DD-AAD8-01 15 33261039 33261039 G A FMN1 Missense_Mutation p.P732S 0.23 deleterious_low_confidence(0.04) unknown(0) TCGA-DD-AAD8-01 15 40757560 40757560 G A BAHD1 Silent p.S693S 0.21 TCGA-DD-AAD8-01 15 43712632 43712634 CAG - TP53BP1 In_Frame_Del p.A1517del 0.45 TCGA-DD-AAD8-01 15 45695491 45695491 C T SPATA5L1 Silent p.R288R 0.48 TCGA-DD-AAD8-01 15 62155676 62155676 G A VPS13C Missense_Mutation p.P3639S 0.06 tolerated(0.78) benign(0.005) TCGA-DD-AAD8-01 15 71124687 71124687 T A LARP6 Nonsense_Mutation p.R394* 0.59 TCGA-DD-AAD8-01 15 77474384 77474384 T A PEAK1 Splice_Site 0.38 TCGA-DD-AAD8-01 15 81225586 81225586 A G KIAA1199 Missense_Mutation p.I932V 0.54 tolerated(1) possibly_damaging(0.562) TCGA-DD-AAD8-01 16 14758825 14758825 G A BFAR Missense_Mutation p.E353K 0.04 tolerated(0.05) benign(0.089) TCGA-DD-AAD8-01 16 2339511 2339511 C A ABCA3 Missense_Mutation p.C875F 0.49 tolerated(0.05) benign(0.342) TCGA-DD-AAD8-01 16 24922649 24922650 GT - SLC5A11 Frame_Shift_Del p.C608* 0.31 TCGA-DD-AAD8-01 16 48239436 48239436 C G ABCC11 Missense_Mutation p.E565Q 0.41 tolerated(0.37) benign(0.017) TCGA-DD-AAD8-01 16 49559304 49559304 C T ZNF423 Missense_Mutation p.G1227S 0.26 tolerated(0.32) benign(0.069) TCGA-DD-AAD8-01 16 53488597 53488597 A T RBL2 Missense_Mutation p.Y341F 0.44 tolerated(0.06) benign(0.082) TCGA-DD-AAD8-01 16 72016082 72016082 G C PKD1L3 RNA 0.39 TCGA-DD-AAD8-01 16 81891876 81891876 A G PLCG2 Missense_Mutation p.K116E 0.50 tolerated(1) benign(0.046) TCGA-DD-AAD8-01 16 84529321 84529321 C A TLDC1 Nonsense_Mutation p.E118* 0.40 TCGA-DD-AAD8-01 17 11757663 11757663 C A DNAH9 Missense_Mutation p.P3284H 0.84 probably_damaging(1) TCGA-DD-AAD8-01 17 26732441 26732441 C T SLC46A1 Missense_Mutation p.G92S 0.48 tolerated(0.3) benign(0.061) TCGA-DD-AAD8-01 17 29560090 29560090 A T NF1 Missense_Mutation p.Q1189H 0.45 deleterious(0) probably_damaging(0.976) TCGA-DD-AAD8-01 17 33504057 33504057 G A UNC45B Missense_Mutation p.E685K 0.25 deleterious(0.04) possibly_damaging(0.493) TCGA-DD-AAD8-01 17 33768135 33768135 C T SLFN13 Missense_Mutation p.E725K 0.44 deleterious(0.01) probably_damaging(0.989) TCGA-DD-AAD8-01 17 40835882 40835882 C A CNTNAP1 Silent p.S37S 0.43 TCGA-DD-AAD8-01 17 41020203 41020203 C T AOC4P RNA 0.18 TCGA-DD-AAD8-01 17 43214134 43214134 G A ACBD4 Silent p.V95V 0.40 TCGA-DD-AAD8-01 17 47590366 47590367 GT - NGFR Frame_Shift_Del p.*428S 0.26 TCGA-DD-AAD8-01 17 56383220 56383220 G T BZRAP1 Nonsense_Mutation p.S1744* 0.28 TCGA-DD-AAD8-01 17 63223595 63223595 A T RGS9 3'UTR 0.36 TCGA-DD-AAD8-01 17 65870972 65870972 T C BPTF Missense_Mutation p.I567T 0.48 benign(0.023) TCGA-DD-AAD8-01 17 7318992 7318992 T G NLGN2 Silent p.G400G 0.81 TCGA-DD-AAD8-01 17 7577610 7577610 T A TP53 Splice_Site p.X225_splice 0.95 TCGA-DD-AAD8-01 18 13826134 13826134 A T MC5R Missense_Mutation p.I124F 0.41 tolerated(0.18) probably_damaging(0.998) TCGA-DD-AAD8-01 18 56033235 56033235 A T NEDD4L Missense_Mutation p.D613V 0.50 deleterious(0) probably_damaging(0.995) TCGA-DD-AAD8-01 18 77905891 77905891 A G AC139100.2 5'UTR 0.42 TCGA-DD-AAD8-01 19 19106050 19106050 C T SUGP2 Missense_Mutation p.D1011N 0.29 tolerated(0.37) benign(0.06) TCGA-DD-AAD8-01 19 36003550 36003550 C A DMKN Missense_Mutation p.G190V 0.35 deleterious(0) probably_damaging(0.999) TCGA-DD-AAD8-01 19 43672343 43672343 T A PSG5 Intron 0.50 TCGA-DD-AAD8-01 19 45988808 45988808 A T RTN2 3'UTR 0.46 TCGA-DD-AAD8-01 19 46367603 46367603 C T FOXA3 5'UTR 0.58 TCGA-DD-AAD8-01 19 47944676 47944676 T A SLC8A2 Silent p.I595I 0.46 TCGA-DD-AAD8-01 19 48848536 48848536 T A TMEM143 Missense_Mutation p.N149Y 0.47 deleterious(0.01) possibly_damaging(0.703) TCGA-DD-AAD8-01 19 51022527 51022527 G A LRRC4B Missense_Mutation p.T148M 0.18 tolerated(0.2) benign(0.142) TCGA-DD-AAD8-01 19 621737 621737 G A POLRMT Missense_Mutation p.P654L 0.33 deleterious(0) probably_damaging(1) TCGA-DD-AAD8-01 19 7152760 7152760 C T INSR Silent p.L736L 0.38 TCGA-DD-AAD8-01 19 7762139 7762139 T A FCER2 Missense_Mutation p.Q100L 0.25 deleterious(0.03) benign(0.032) TCGA-DD-AAD8-01 1 10042777 10042777 A T NMNAT1 3'UTR 0.29 TCGA-DD-AAD8-01 1 111216248 111216248 A T KCNA3 Missense_Mutation p.M395K 0.34 deleterious(0) probably_damaging(0.977) TCGA-DD-AAD8-01 1 114498222 114498222 C T HIPK1 Missense_Mutation p.S453L 0.38 deleterious(0) probably_damaging(0.998) TCGA-DD-AAD8-01 1 150598960 150598960 C A ENSA Nonsense_Mutation p.E76* 0.43 TCGA-DD-AAD8-01 1 151209072 151209072 G T PIP5K1A Missense_Mutation p.L326F 0.32 deleterious(0) probably_damaging(0.98) TCGA-DD-AAD8-01 1 152856963 152856963 A T SMCP Missense_Mutation p.Q22L 0.40 tolerated(0.09) benign(0) TCGA-DD-AAD8-01 1 156452269 156452269 T C MEF2D Missense_Mutation p.N73S 0.55 deleterious(0) benign(0.207) TCGA-DD-AAD8-01 1 156555548 156555548 T A TTC24 Silent p.A500A 0.49 TCGA-DD-AAD8-01 1 157765954 157765954 A T FCRL1 Missense_Mutation p.L409I 0.45 tolerated(0.42) benign(0.306) TCGA-DD-AAD8-01 1 160063091 160063091 C T IGSF8 Missense_Mutation p.G312D 0.22 deleterious(0.04) possibly_damaging(0.619) TCGA-DD-AAD8-01 1 178427017 178427017 G T RASAL2 Missense_Mutation p.A864S 0.07 tolerated(0.94) benign(0.006) TCGA-DD-AAD8-01 1 179347779 179347779 T C AXDND1 Missense_Mutation p.S128P 0.58 deleterious(0) possibly_damaging(0.665) TCGA-DD-AAD8-01 1 180804015 180804015 A T XPR1 Silent p.R380R 0.55 TCGA-DD-AAD8-01 1 200817167 200817167 G T CAMSAP2 Missense_Mutation p.V424L 0.34 tolerated(0.72) benign(0.008) TCGA-DD-AAD8-01 1 223465815 223465815 C T SUSD4 Nonsense_Mutation p.W109* 0.06 TCGA-DD-AAD8-01 1 225155516 225155516 A T DNAH14 Intron 0.33 TCGA-DD-AAD8-01 1 225211433 225211433 A T DNAH14 Silent p.V408V 0.56 TCGA-DD-AAD8-01 1 230883256 230883256 A T CAPN9 Missense_Mutation p.Y5F 0.52 tolerated_low_confidence(0.23) benign(0.002) TCGA-DD-AAD8-01 1 233297033 233297033 A T PCNXL2 Missense_Mutation p.V1117E 0.35 deleterious(0) probably_damaging(0.979) TCGA-DD-AAD8-01 1 235747052 235747052 C T GNG4 Missense_Mutation p.M29I 0.45 tolerated(1) benign(0.004) TCGA-DD-AAD8-01 1 26887597 26887597 A T RPS6KA1 Missense_Mutation p.Q477L 0.59 deleterious(0.04) benign(0.07) TCGA-DD-AAD8-01 1 38197219 38197219 T C EPHA10 Silent p.T509T 0.22 TCGA-DD-AAD8-01 1 70541979 70541979 C G LRRC7 Missense_Mutation p.Q1446E 0.64 tolerated(0.57) probably_damaging(0.949) TCGA-DD-AAD8-01 1 94012443 94012443 A T FNBP1L Missense_Mutation p.Q440L 0.65 deleterious(0) benign(0.428) TCGA-DD-AAD8-01 20 126074 126074 A G DEFB126 Missense_Mutation p.K26R 0.28 tolerated(0.48) benign(0.008) TCGA-DD-AAD8-01 20 1616155 1616155 C A SIRPG Missense_Mutation p.S280I 0.50 tolerated(0.15) benign(0.024) TCGA-DD-AAD8-01 20 34810266 34810266 G A EPB41L1 Missense_Mutation p.V863I 0.47 deleterious(0) probably_damaging(0.997) TCGA-DD-AAD8-01 20 5903869 5903869 A T CHGB Missense_Mutation p.E360V 0.40 tolerated(0.17) benign(0.193) TCGA-DD-AAD8-01 20 62378586 62378586 C A ZBTB46 Silent p.V489V 0.19 TCGA-DD-AAD8-01 22 18095625 18095625 T C ATP6V1E1 Missense_Mutation p.N77D 0.21 deleterious(0) probably_damaging(0.987) TCGA-DD-AAD8-01 22 19492943 19492943 C T CDC45 Missense_Mutation p.R287W 0.24 deleterious(0.04) benign(0.081) TCGA-DD-AAD8-01 22 21343966 21344002 GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA - LZTR1 Splice_Site p.X217_splice 0.28 TCGA-DD-AAD8-01 22 46654515 46654515 G A PKDREJ Missense_Mutation p.R1569W 0.42 tolerated(0.13) benign(0.007) TCGA-DD-AAD8-01 2 128044277 128044277 A G ERCC3 Splice_Site p.X448_splice 0.47 TCGA-DD-AAD8-01 2 178370292 178370292 G A AGPS Missense_Mutation p.A512T 0.37 deleterious(0) probably_damaging(0.945) TCGA-DD-AAD8-01 2 179407205 179407205 C T TTN Silent p.L32426L 0.42 TCGA-DD-AAD8-01 2 179465992 179465992 A T TTN Missense_Mutation p.Y18578N 0.51 TCGA-DD-AAD8-01 2 55253108 55253108 A T RTN4 Silent p.A709A 0.61 TCGA-DD-AAD8-01 2 64120302 64120302 A C VPS54 3'UTR 0.80 TCGA-DD-AAD8-01 2 64120381 64120381 A C VPS54 3'UTR 0.55 TCGA-DD-AAD8-01 2 68872822 68872822 C T PROKR1 5'UTR 0.37 TCGA-DD-AAD8-01 2 84518427 84518428 GT C FUNDC2P2 RNA 0.27 TCGA-DD-AAD8-01 3 109050838 109050838 G A DPPA4 Silent p.P73P 0.38 TCGA-DD-AAD8-01 3 124540273 124540273 T C ITGB5 Missense_Mutation p.T277A 0.59 deleterious(0) possibly_damaging(0.818) TCGA-DD-AAD8-01 3 53916141 53916141 C T ACTR8 5'UTR 0.21 TCGA-DD-AAD8-01 3 62357731 62357731 A G FEZF2 Silent p.D271D 0.40 TCGA-DD-AAD8-01 4 123184690 123184690 G A KIAA1109 Missense_Mutation p.G2359D 0.31 possibly_damaging(0.543) TCGA-DD-AAD8-01 4 141481162 141481162 A T UCP1 Nonsense_Mutation p.L271* 0.29 TCGA-DD-AAD8-01 4 145580875 145580875 C T HHIP Missense_Mutation p.S239L 0.59 deleterious(0) probably_damaging(0.996) TCGA-DD-AAD8-01 4 154502619 154502619 G C KIAA0922 Missense_Mutation p.E267Q 0.29 tolerated(0.09) possibly_damaging(0.697) TCGA-DD-AAD8-01 4 178358643 178358643 C T AGA Missense_Mutation p.G180R 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-DD-AAD8-01 4 41259714 41259714 C T UCHL1 Missense_Mutation p.P45L 0.57 deleterious(0) possibly_damaging(0.482) TCGA-DD-AAD8-01 4 42576682 42576682 T A ATP8A1 Missense_Mutation p.N417Y 0.64 deleterious(0) probably_damaging(0.999) TCGA-DD-AAD8-01 4 46736854 46736854 T C COX7B2 3'UTR 0.30 TCGA-DD-AAD8-01 4 47453576 47453576 C T COMMD8 3'UTR 0.48 TCGA-DD-AAD8-01 4 54325901 54325901 C T LNX1 3'Flank 0.64 TCGA-DD-AAD8-01 4 81188186 81188186 C A FGF5 Missense_Mutation p.Q70K 0.09 tolerated(0.33) benign(0.023) TCGA-DD-AAD8-01 4 83829016 83829016 A C THAP9 Missense_Mutation p.Y220S 0.54 deleterious(0.01) possibly_damaging(0.782) TCGA-DD-AAD8-01 4 84382321 84382321 A G MRPS18C Missense_Mutation p.K134E 0.32 deleterious(0) benign(0.41) TCGA-DD-AAD8-01 5 109181594 109181594 T G MAN2A1 Missense_Mutation p.L910W 0.26 deleterious(0) probably_damaging(0.999) TCGA-DD-AAD8-01 5 110462533 110462533 C A WDR36 Missense_Mutation p.F936L 0.27 tolerated(0.71) benign(0.123) TCGA-DD-AAD8-01 5 138857039 138857039 T C TMEM173 Missense_Mutation p.Y274C 0.26 deleterious(0) possibly_damaging(0.698) TCGA-DD-AAD8-01 5 142253059 142253059 A T ARHGAP26 Silent p.I83I 0.36 TCGA-DD-AAD8-01 5 150925208 150925208 T C FAT2 Missense_Mutation p.E1827G 0.59 benign(0.021) TCGA-DD-AAD8-01 5 169505977 169505977 A G DOCK2 Splice_Site p.X1665_splice 0.18 TCGA-DD-AAD8-01 5 170720952 170720952 G A RANBP17 Silent p.R1003R 0.26 TCGA-DD-AAD8-01 5 176084843 176084843 C T TSPAN17 3'UTR 0.21 TCGA-DD-AAD8-01 5 180030295 180030295 T C FLT4 Missense_Mutation p.Q1330R 0.30 deleterious_low_confidence(0.01) benign(0.03) TCGA-DD-AAD8-01 5 38978734 38978734 T A RICTOR Missense_Mutation p.T258S 0.39 deleterious(0.01) probably_damaging(0.975) TCGA-DD-AAD8-01 5 50123821 50123821 G A PARP8 Missense_Mutation p.S674N 0.59 tolerated(0.05) probably_damaging(0.98) TCGA-DD-AAD8-01 6 135358397 135358397 G C HBS1L Intron 0.28 TCGA-DD-AAD8-01 6 151265723 151265723 A T MTHFD1L Silent p.T514T 0.28 TCGA-DD-AAD8-01 6 161470546 161470546 G A MAP3K4 Silent p.L414L 0.26 TCGA-DD-AAD8-01 6 161523752 161523752 A T MAP3K4 Missense_Mutation p.D1266V 0.61 deleterious(0.02) benign(0.342) TCGA-DD-AAD8-01 6 28117277 28117277 A G ZKSCAN8 Missense_Mutation p.H145R 0.44 tolerated(0.24) benign(0.001) TCGA-DD-AAD8-01 6 29323109 29323109 T A OR5V1 Silent p.I288I 0.48 TCGA-DD-AAD8-01 6 29324036 29324036 T A OR5V1 5'UTR 0.41 TCGA-DD-AAD8-01 6 31975626 31975626 G A AL645922.1 5'Flank 0.41 TCGA-DD-AAD8-01 6 33690512 33690512 G A IP6K3 Silent p.I406I 0.20 TCGA-DD-AAD8-01 6 74228551 74228551 C G EEF1A1 Missense_Mutation p.W214C 0.32 deleterious_low_confidence(0.01) benign(0.355) TCGA-DD-AAD8-01 7 100088252 100088252 A G NYAP1 Silent p.A686A 0.45 TCGA-DD-AAD8-01 7 108524539 108524539 A C C7orf66 Silent p.P17P 0.37 TCGA-DD-AAD8-01 7 138552742 138552742 G T KIAA1549 Missense_Mutation p.N1636K 0.07 deleterious(0) probably_damaging(1) TCGA-DD-AAD8-01 7 31690753 31690753 C A CCDC129 Intron 0.21 TCGA-DD-AAD8-01 7 77973184 77973184 A C MAGI2 Missense_Mutation p.I440S 0.21 deleterious(0) probably_damaging(1) TCGA-DD-AAD8-01 7 99328709 99328709 A G CYP3A7 Silent p.F46F 0.30 TCGA-DD-AAD8-01 8 11189520 11189520 A T SLC35G5 Missense_Mutation p.H302L 0.53 tolerated(0.59) benign(0.03) TCGA-DD-AAD8-01 8 116616870 116616870 C A TRPS1 Missense_Mutation p.E442D 0.32 tolerated_low_confidence(1) benign(0.003) TCGA-DD-AAD8-01 8 39645736 39645736 G A ADAM2 Missense_Mutation p.S226F 0.58 deleterious(0.02) possibly_damaging(0.539) TCGA-DD-AAD8-01 8 39785514 39785514 C A IDO1 Missense_Mutation p.S341Y 0.82 deleterious(0) possibly_damaging(0.823) TCGA-DD-AAD8-01 8 49985444 49985444 A T C8orf22 Nonsense_Mutation p.K19* 0.79 TCGA-DD-AAD8-01 8 69445440 69445440 G T C8orf34 Intron 0.40 TCGA-DD-AAD8-01 9 119116067 119116067 T A PAPPA Missense_Mutation p.S1448T 0.23 tolerated(0.63) benign(0.418) TCGA-DD-AAD8-01 9 140247240 140247240 T A EXD3 Splice_Site p.X291_splice 0.25 TCGA-DD-AAD8-01 9 14722569 14722569 G C CER1 Silent p.L34L 0.38 TCGA-DD-AAD8-01 9 35063004 35063004 T A VCP Missense_Mutation p.E261V 0.40 deleterious(0) probably_damaging(0.999) TCGA-DD-AAD8-01 9 91610495 91610495 T C C9orf47 3'UTR 0.27 TCGA-DD-AAD8-01 X 11793398 11793398 G T MSL3 3'UTR 0.89 TCGA-DD-AAD8-01 X 43587514 43587514 C T MAOA Nonsense_Mutation p.Q200* 0.05 TCGA-DD-AAD8-01 X 44101519 44101519 A C EFHC2 Silent p.V376V 0.83 TCGA-DD-AAD8-01 X 92965600 92965600 T A FAM133A 3'UTR 0.38 TCGA-DD-AADA-01 10 104572770 104572770 G C WBP1L Missense_Mutation p.E258D 0.18 tolerated(1) benign(0.002) TCGA-DD-AADA-01 10 108337267 108337267 C T SORCS1 Intron 0.21 TCGA-DD-AADA-01 10 54074368 54074368 T C DKK1 Silent p.S58S 0.19 TCGA-DD-AADA-01 10 96350209 96350209 C T HELLS Nonsense_Mutation p.R510* 0.04 TCGA-DD-AADA-01 11 123909502 123909502 C A OR10G7 Missense_Mutation p.M69I 0.13 tolerated(0.78) benign(0.005) TCGA-DD-AADA-01 11 20057523 20057523 C T NAV2 Silent p.S952S 0.29 TCGA-DD-AADA-01 11 55587664 55587664 T A OR5D18 Missense_Mutation p.S187T 0.10 deleterious(0.03) benign(0.021) TCGA-DD-AADA-01 11 57983133 57983133 G A OR1S1 Missense_Mutation p.R306K 0.12 deleterious(0.02) benign(0.102) TCGA-DD-AADA-01 11 6424420 6424420 T A APBB1 Missense_Mutation p.Q353H 0.16 tolerated(0.05) benign(0.243) TCGA-DD-AADA-01 11 68540890 68540890 T A CPT1A Missense_Mutation p.E528V 0.20 tolerated(0.13) benign(0.067) TCGA-DD-AADA-01 11 72945790 72945790 G A P2RY2 Missense_Mutation p.V196M 0.23 tolerated(0.11) benign(0.149) TCGA-DD-AADA-01 11 73366919 73366919 G T PLEKHB1 Silent p.S154S 0.10 TCGA-DD-AADA-01 11 86522032 86522032 G T PRSS23 3'UTR 0.27 TCGA-DD-AADA-01 12 10862613 10862613 C T YBX3 Missense_Mutation p.R225H 0.06 tolerated(0.17) benign(0.016) TCGA-DD-AADA-01 12 124882700 124882700 C T NCOR2 Missense_Mutation p.R614H 0.10 unknown(0) TCGA-DD-AADA-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.15 deleterious(0) benign(0.361) TCGA-DD-AADA-01 12 4921845 4921845 T C KCNA6 3'UTR 0.10 TCGA-DD-AADA-01 12 50348011 50348011 T A AQP2 Missense_Mutation p.I145N 0.25 deleterious(0) probably_damaging(0.929) TCGA-DD-AADA-01 12 53163331 53163331 A - KRT76 Splice_Site p.X507_splice 0.19 TCGA-DD-AADA-01 12 63974527 63974527 G A DPY19L2 Silent p.L605L 0.30 TCGA-DD-AADA-01 12 85450161 85450161 A T LRRIQ1 Missense_Mutation p.L530F 0.13 tolerated(0.05) benign(0.037) TCGA-DD-AADA-01 13 39262692 39262692 A T FREM2 Missense_Mutation p.Q404L 0.15 tolerated(0.69) benign(0.013) TCGA-DD-AADA-01 13 46067592 46067592 A T COG3 Missense_Mutation p.E433V 0.35 deleterious(0) probably_damaging(1) TCGA-DD-AADA-01 14 102027713 102027713 C G DIO3 5'UTR 0.35 TCGA-DD-AADA-01 14 20847004 20847004 T C TEP1 Missense_Mutation p.Q1754R 0.20 tolerated(0.4) possibly_damaging(0.565) TCGA-DD-AADA-01 14 24905674 24905674 A T KHNYN Missense_Mutation p.E589V 0.25 deleterious(0) possibly_damaging(0.899) TCGA-DD-AADA-01 14 29238645 29238645 G C FOXG1 3'UTR 0.06 TCGA-DD-AADA-01 14 52485915 52485915 G A NID2 Silent p.D964D 0.19 TCGA-DD-AADA-01 14 64469831 64469831 G T SYNE2 Missense_Mutation p.G1394C 0.05 probably_damaging(1) TCGA-DD-AADA-01 14 70633575 70633575 G A SLC8A3 Missense_Mutation p.T522I 0.12 tolerated(0.08) benign(0.338) TCGA-DD-AADA-01 14 89094074 89094074 C A EML5 Missense_Mutation p.V1483F 0.39 deleterious(0) possibly_damaging(0.899) TCGA-DD-AADA-01 15 56386765 56386765 G C RFX7 Missense_Mutation p.A1054G 0.34 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DD-AADA-01 15 85186608 85186608 A C WDR73 3'UTR 0.38 TCGA-DD-AADA-01 16 29934567 29934567 C T KCTD13 Missense_Mutation p.E120K 0.39 deleterious(0) probably_damaging(1) TCGA-DD-AADA-01 16 3304621 3304621 G A MEFV Silent p.A149A 0.28 TCGA-DD-AADA-01 16 46708524 46708524 A C VPS35 Missense_Mutation p.D321E 0.14 tolerated(0.64) benign(0.003) TCGA-DD-AADA-01 16 68849632 68849632 A T CDH1 Missense_Mutation p.E512V 0.26 deleterious(0) possibly_damaging(0.636) TCGA-DD-AADA-01 16 88502369 88502369 G T ZNF469 Missense_Mutation p.V2803F 0.08 possibly_damaging(0.501) TCGA-DD-AADA-01 16 88923324 88923324 G A GALNS 5'UTR 0.04 TCGA-DD-AADA-01 17 11881999 11882007 GGAGCTCCT - ZNF18 In_Frame_Del p.Q306_L308del 0.28 TCGA-DD-AADA-01 17 18428968 18428968 C - FAM106A 3'UTR 0.37 TCGA-DD-AADA-01 17 18428971 18428971 A T FAM106A 3'UTR 0.39 TCGA-DD-AADA-01 17 37824849 37824849 G T PNMT Missense_Mutation p.A41S 0.06 tolerated(0.68) benign(0.023) TCGA-DD-AADA-01 17 37903233 37903233 G A GRB7 3'UTR 0.50 TCGA-DD-AADA-01 17 42979763 42979763 G A CCDC103 Missense_Mutation p.A103T 0.36 deleterious(0.03) possibly_damaging(0.677) TCGA-DD-AADA-01 17 48667861 48667861 C A CACNA1G Silent p.I777I 0.06 TCGA-DD-AADA-01 17 60599622 60599622 G A TLK2 Missense_Mutation p.E71K 0.34 tolerated_low_confidence(0.09) benign(0.098) TCGA-DD-AADA-01 17 79633783 79633783 C A CCDC137 5'UTR 0.38 TCGA-DD-AADA-01 18 30846940 30846940 G A CCDC178 Missense_Mutation p.T450M 0.34 tolerated(0.34) benign(0.002) TCGA-DD-AADA-01 18 31323438 31323438 T A ASXL3 Missense_Mutation p.V1209E 0.36 benign(0.432) TCGA-DD-AADA-01 18 43703286 43703286 A G HAUS1 Missense_Mutation p.M208V 0.05 deleterious(0.01) benign(0.01) TCGA-DD-AADA-01 18 6985272 6985272 G C LAMA1 Missense_Mutation p.A1875G 0.16 deleterious(0) probably_damaging(0.968) TCGA-DD-AADA-01 19 12739581 12739581 A - ZNF791 Frame_Shift_Del p.E413Gfs*19 0.11 TCGA-DD-AADA-01 19 15547669 15547669 C T WIZ Silent p.T159T 0.11 TCGA-DD-AADA-01 19 30936235 30936235 G A ZNF536 Missense_Mutation p.G589D 0.36 deleterious(0.02) possibly_damaging(0.46) TCGA-DD-AADA-01 19 30936236 30936236 C A ZNF536 Silent p.G589G 0.35 TCGA-DD-AADA-01 19 3462884 3462884 C T NFIC 3'UTR 0.50 TCGA-DD-AADA-01 19 36361890 36361890 C T APLP1 Silent p.C128C 0.06 TCGA-DD-AADA-01 19 39034257 39034257 C T RYR1 Missense_Mutation p.S3955L 0.09 benign(0.001) TCGA-DD-AADA-01 19 39996065 39996065 G A DLL3 Missense_Mutation p.R356Q 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-DD-AADA-01 19 40901569 40901569 C T PRX Missense_Mutation p.R897Q 0.17 deleterious(0.01) benign(0.417) TCGA-DD-AADA-01 19 52869167 52869167 A G ZNF610 Missense_Mutation p.Y179C 0.35 tolerated(0.09) benign(0.006) TCGA-DD-AADA-01 19 55593208 55593208 C T EPS8L1 Missense_Mutation p.A281V 0.20 deleterious(0) probably_damaging(0.998) TCGA-DD-AADA-01 19 58772416 58772416 G C ZNF544 Missense_Mutation p.E148D 0.15 tolerated(0.14) benign(0.074) TCGA-DD-AADA-01 19 6720638 6720638 C T C3 5'UTR 0.10 TCGA-DD-AADA-01 19 7676885 7676885 C T CAMSAP3 Silent p.P529P 0.12 TCGA-DD-AADA-01 1 12336579 12336579 C T VPS13D Silent p.L978L 0.51 TCGA-DD-AADA-01 1 169101615 169101615 C G ATP1B1 3'UTR 0.21 TCGA-DD-AADA-01 1 176762782 176762782 T C PAPPA2 Missense_Mutation p.W1703R 0.19 tolerated(0.23) benign(0.18) TCGA-DD-AADA-01 1 186076063 186076063 A T HMCN1 Silent p.G3606G 0.27 TCGA-DD-AADA-01 1 186880396 186880396 C T PLA2G4A Nonsense_Mutation p.R145* 0.34 TCGA-DD-AADA-01 1 19583602 19583602 G A MRTO4 Missense_Mutation p.R79Q 0.50 deleterious(0.04) benign(0.342) TCGA-DD-AADA-01 1 20009838 20009838 C T TMCO4 Missense_Mutation p.A534T 0.51 tolerated(0.23) possibly_damaging(0.476) TCGA-DD-AADA-01 1 236647610 236647610 T A EDARADD 3'Flank 0.36 TCGA-DD-AADA-01 1 242042426 242042426 G A EXO1 Silent p.L630L 0.08 TCGA-DD-AADA-01 1 76397825 76397825 A T ASB17 Missense_Mutation p.L51Q 0.39 deleterious_low_confidence(0) possibly_damaging(0.902) TCGA-DD-AADA-01 1 94548954 94548954 C A ABCA4 Missense_Mutation p.R271I 0.22 tolerated(0.08) benign(0.254) TCGA-DD-AADA-01 20 23016628 23016628 G T SSTR4 Missense_Mutation p.V170L 0.08 deleterious(0.04) benign(0.36) TCGA-DD-AADA-01 20 30371654 30371654 A T TPX2 Missense_Mutation p.K448M 0.35 deleterious(0) probably_damaging(0.963) TCGA-DD-AADA-01 20 33370044 33370044 T C NCOA6 Missense_Mutation p.S39G 0.36 benign(0) TCGA-DD-AADA-01 20 33657145 33657145 G C TRPC4AP Missense_Mutation p.T123S 0.35 tolerated(1) benign(0.001) TCGA-DD-AADA-01 20 39993687 39993687 G T EMILIN3 Missense_Mutation p.P93H 0.38 deleterious(0) probably_damaging(0.983) TCGA-DD-AADA-01 20 42788721 42788721 G A JPH2 Missense_Mutation p.R236C 0.07 deleterious(0) possibly_damaging(0.871) TCGA-DD-AADA-01 20 60739279 60739279 T G SS18L1 Missense_Mutation p.M267R 0.08 deleterious_low_confidence(0.02) benign(0.391) TCGA-DD-AADA-01 20 61951458 61951458 C T COL20A1 Missense_Mutation p.P995L 0.35 tolerated(0.07) benign(0.071) TCGA-DD-AADA-01 21 34400838 34400838 A G OLIG2 3'UTR 0.39 TCGA-DD-AADA-01 21 35893850 35893850 G A RCAN1 Missense_Mutation p.A178V 0.14 deleterious(0.01) possibly_damaging(0.852) TCGA-DD-AADA-01 21 38858785 38858785 A T DYRK1A Missense_Mutation p.D178V 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AADA-01 22 16256535 16256535 T G POTEH 3'UTR 0.07 TCGA-DD-AADA-01 22 23101270 23101270 G A IGLV2-14 Missense_Mutation p.G14D 0.10 tolerated_low_confidence(0.89) benign(0.009) TCGA-DD-AADA-01 22 37273743 37273743 G T NCF4 3'UTR 0.34 TCGA-DD-AADA-01 2 109513487 109513487 A G EDAR Missense_Mutation p.I408T 0.05 deleterious(0) possibly_damaging(0.474) TCGA-DD-AADA-01 2 127453545 127453545 G A GYPC Missense_Mutation p.V72I 0.09 tolerated(0.31) benign(0.109) TCGA-DD-AADA-01 2 128015032 128015032 C T ERCC3 3'UTR 0.13 TCGA-DD-AADA-01 2 15841423 15841423 A T AC008271.1 Missense_Mutation p.M70L 0.37 benign(0.019) TCGA-DD-AADA-01 2 179449197 179449197 T A TTN Missense_Mutation p.Y21694F 0.06 TCGA-DD-AADA-01 2 207175623 207175623 A G ZDBF2 Missense_Mutation p.D2124G 0.31 tolerated(0.46) benign(0.014) TCGA-DD-AADA-01 2 220073125 220073125 C T ZFAND2B Intron 0.39 TCGA-DD-AADA-01 2 220147607 220147607 C T DNAJB2 Missense_Mutation p.S134L 0.23 tolerated(0.42) benign(0.031) TCGA-DD-AADA-01 2 220500183 220500183 T A SLC4A3 Missense_Mutation p.M673K 0.25 tolerated(0.67) benign(0.001) TCGA-DD-AADA-01 2 235943728 235943728 G A SH3BP4 Missense_Mutation p.E28K 0.31 deleterious_low_confidence(0.01) benign(0.296) TCGA-DD-AADA-01 2 27305559 27305559 G A EMILIN1 Missense_Mutation p.G374S 0.06 benign(0.039) TCGA-DD-AADA-01 2 37280689 37280689 C A HEATR5B Missense_Mutation p.A821S 0.41 tolerated(0.13) benign(0.068) TCGA-DD-AADA-01 3 112358141 112358141 G A CCDC80 Silent p.T204T 0.05 TCGA-DD-AADA-01 3 121228964 121228964 C T POLQ Missense_Mutation p.G580R 0.32 deleterious(0) possibly_damaging(0.882) TCGA-DD-AADA-01 3 133474311 133474312 - A TF Frame_Shift_Ins p.Y204Ifs*28 0.15 TCGA-DD-AADA-01 3 16411777 16411777 A G RFTN1 Missense_Mutation p.I279T 0.14 tolerated(0.07) probably_damaging(0.957) TCGA-DD-AADA-01 3 167293897 167293897 T A WDR49 Missense_Mutation p.R99W 0.15 deleterious(0) probably_damaging(0.989) TCGA-DD-AADA-01 3 182683391 182683391 T C DCUN1D1 Missense_Mutation p.I52V 0.06 tolerated(0.41) benign(0.001) TCGA-DD-AADA-01 3 185213096 185213096 A G TMEM41A Missense_Mutation p.L94S 0.32 deleterious(0) probably_damaging(0.999) TCGA-DD-AADA-01 3 42799704 42799704 T C CCDC13 Missense_Mutation p.D45G 0.22 tolerated(0.35) benign(0.014) TCGA-DD-AADA-01 3 42917387 42917387 G T CYP8B1 5'UTR 0.45 TCGA-DD-AADA-01 3 52437795 52437795 G A BAP1 Nonsense_Mutation p.Q456* 0.45 TCGA-DD-AADA-01 3 52441304 52441304 G A BAP1 Nonsense_Mutation p.Q156* 0.37 TCGA-DD-AADA-01 3 57303766 57303766 T C APPL1 3'UTR 0.11 TCGA-DD-AADA-01 3 7620272 7620272 G A GRM7 Missense_Mutation p.C560Y 0.36 deleterious(0) probably_damaging(0.998) TCGA-DD-AADA-01 3 78701075 78701075 G A ROBO1 Silent p.A873A 0.33 TCGA-DD-AADA-01 3 98189208 98189208 A C OR5K1 Missense_Mutation p.N263T 0.29 tolerated(0.11) possibly_damaging(0.8) TCGA-DD-AADA-01 4 106160000 106160000 C A TET2 Intron 0.35 TCGA-DD-AADA-01 4 122251606 122251606 A T QRFPR Missense_Mutation p.H290Q 0.17 deleterious(0) possibly_damaging(0.739) TCGA-DD-AADA-01 4 126398471 126398471 C T FAT4 Missense_Mutation p.A4152V 0.16 benign(0.099) TCGA-DD-AADA-01 4 129792936 129792936 A G JADE1 Missense_Mutation p.K683R 0.12 tolerated(0.25) benign(0.025) TCGA-DD-AADA-01 4 152609877 152609877 T C PET112 Missense_Mutation p.I412M 0.14 tolerated(0.55) benign(0.004) TCGA-DD-AADA-01 4 170618374 170618374 G T CLCN3 Missense_Mutation p.R351I 0.25 deleterious(0) probably_damaging(0.992) TCGA-DD-AADA-01 4 189064806 189064806 T A TRIML1 Intron 0.29 TCGA-DD-AADA-01 4 42424896 42424896 T A ATP8A1 Missense_Mutation p.K1078I 0.08 deleterious(0.01) probably_damaging(0.991) TCGA-DD-AADA-01 4 44713036 44713036 T A GNPDA2 Silent p.G176G 0.24 TCGA-DD-AADA-01 4 74279249 74279251 ATG - ALB In_Frame_Del p.D320del 0.29 TCGA-DD-AADA-01 5 115298661 115298661 G A AQPEP Missense_Mutation p.R116K 0.19 tolerated(0.2) benign(0.044) TCGA-DD-AADA-01 5 136476319 136476319 G A SPOCK1 Silent p.T99T 0.12 TCGA-DD-AADA-01 5 140176112 140176112 G T PCDHA2 Missense_Mutation p.Q521H 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.554) TCGA-DD-AADA-01 5 140432819 140432819 C A PCDHB1 Silent p.T588T 0.35 TCGA-DD-AADA-01 5 140532487 140532487 C A PCDHB6 3'UTR 0.19 TCGA-DD-AADA-01 5 141033383 141033383 G T ARAP3 3'UTR 0.31 TCGA-DD-AADA-01 5 149323845 149323845 T A PDE6A Missense_Mutation p.E131V 0.37 deleterious(0) probably_damaging(0.998) TCGA-DD-AADA-01 5 38431311 38431311 A T EGFLAM Missense_Mutation p.H696L 0.17 deleterious(0.03) probably_damaging(0.976) TCGA-DD-AADA-01 5 43649288 43649288 A G NNT Missense_Mutation p.N495S 0.34 tolerated(0.41) benign(0.101) TCGA-DD-AADA-01 5 55149246 55149246 G T IL31RA Intron 0.11 TCGA-DD-AADA-01 5 57755876 57755876 G A PLK2 5'UTR 0.52 TCGA-DD-AADA-01 5 61684573 61684573 T A DIMT1 3'UTR 0.30 TCGA-DD-AADA-01 5 73048892 73048892 A T ARHGEF28 Missense_Mutation p.S114C 0.31 deleterious(0) probably_damaging(0.994) TCGA-DD-AADA-01 6 106967348 106967348 C A AIM1 Silent p.V347V 0.30 TCGA-DD-AADA-01 6 116263781 116263781 T C FRK Silent p.T438T 0.13 TCGA-DD-AADA-01 6 128388924 128388924 C A PTPRK Missense_Mutation p.V633F 0.25 deleterious(0) probably_damaging(0.991) TCGA-DD-AADA-01 6 138202526 138202526 C G TNFAIP3 3'UTR 0.49 TCGA-DD-AADA-01 6 25594713 25594713 T C LRRC16A Missense_Mutation p.V1026A 0.43 deleterious(0.01) possibly_damaging(0.507) TCGA-DD-AADA-01 6 31868735 31868735 C T ZBTB12 Silent p.V116V 0.18 TCGA-DD-AADA-01 6 40399807 40399807 G T LRFN2 Missense_Mutation p.T349N 0.42 deleterious(0) probably_damaging(0.978) TCGA-DD-AADA-01 7 12414847 12414847 T C VWDE Missense_Mutation p.E344G 0.18 tolerated(0.21) benign(0.01) TCGA-DD-AADA-01 7 142564355 142564355 G A EPHB6 Missense_Mutation p.D527N 0.38 deleterious(0.01) probably_damaging(1) TCGA-DD-AADA-01 7 18066745 18066745 C A PRPS1L1 Missense_Mutation p.D221Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-DD-AADA-01 7 37905206 37905206 G A NME8 Missense_Mutation p.R203Q 0.29 tolerated(0.86) benign(0.016) TCGA-DD-AADA-01 7 44555418 44555418 G A NPC1L1 Silent p.V1287V 0.14 TCGA-DD-AADA-01 7 73020079 73020096 GTCAGCATTGCCGACGTA - MLXIPL In_Frame_Del p.Y275_D280del 0.28 TCGA-DD-AADA-01 7 77797303 77797303 G A MAGI2 Silent p.I842I 0.18 TCGA-DD-AADA-01 7 99699036 99699036 C G MCM7 5'UTR 0.08 TCGA-DD-AADA-01 8 143957288 143957288 A T CYP11B1 Missense_Mutation p.F321I 0.26 tolerated(0.21) benign(0.055) TCGA-DD-AADA-01 8 145759534 145759534 T A ARHGAP39 Silent p.A889A 0.18 TCGA-DD-AADA-01 8 146202295 146202295 G A ZNF252P RNA 0.12 TCGA-DD-AADA-01 8 48802883 48802884 - GCA PRKDC In_Frame_Ins p.C1334dup 0.52 TCGA-DD-AADA-01 8 68965351 68965351 A G PREX2 Silent p.G321G 0.12 TCGA-DD-AADA-01 9 116059774 116059774 T G RNF183 3'UTR 0.34 TCGA-DD-AADA-01 9 123675664 123675664 G A TRAF1 Missense_Mutation p.A216V 0.11 tolerated(0.15) benign(0.287) TCGA-DD-AADA-01 9 136131556 136131556 G - RP11-430N14.4 5'Flank 0.20 TCGA-DD-AADA-01 9 140040236 140040236 G T GRIN1 Missense_Mutation p.W151L 0.25 deleterious(0.01) benign(0.239) TCGA-DD-AADA-01 9 140943745 140943745 G A CACNA1B Missense_Mutation p.A1230T 0.36 deleterious(0.01) probably_damaging(0.981) TCGA-DD-AADA-01 9 2718411 2718411 G A KCNV2 Silent p.A224A 0.43 TCGA-DD-AADA-01 9 5770152 5770152 A G KIAA1432 Missense_Mutation p.I1164V 0.20 tolerated(0.53) benign(0) TCGA-DD-AADA-01 9 79319835 79319835 C A PRUNE2 Missense_Mutation p.G2452V 0.18 tolerated(0.19) possibly_damaging(0.642) TCGA-DD-AADA-01 X 10535300 10535300 A T MID1 Silent p.S96S 0.18 TCGA-DD-AADA-01 X 110459745 110459745 A T PAK3 Missense_Mutation p.M538L 0.10 deleterious(0.01) benign(0.037) TCGA-DD-AADA-01 X 134988200 134988200 A T SAGE1 Missense_Mutation p.N158Y 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-DD-AADA-01 X 19413261 19413261 T A MAP3K15 Missense_Mutation p.Q711L 0.19 deleterious(0) possibly_damaging(0.781) TCGA-DD-AADA-01 X 2951122 2951122 G T ARSH Missense_Mutation p.C462F 0.12 deleterious(0) probably_damaging(0.999) TCGA-DD-AADA-01 X 51151469 51151469 G C CXorf67 3'UTR 0.12 TCGA-DD-AADB-01 10 105792488 105792488 G T COL17A1 Missense_Mutation p.P1461Q 0.28 unknown(0) TCGA-DD-AADB-01 10 106937875 106937875 T A SORCS3 Silent p.V651V 0.08 TCGA-DD-AADB-01 10 112258020 112258020 C T DUSP5 Silent p.L47L 0.25 TCGA-DD-AADB-01 10 129900917 129900917 C T MKI67 Missense_Mutation p.E3063K 0.40 tolerated(0.24) benign(0.004) TCGA-DD-AADB-01 10 45429084 45429084 G T TMEM72 Splice_Site p.X70_splice 0.32 TCGA-DD-AADB-01 10 56077047 56077047 G T PCDH15 Missense_Mutation p.P287H 0.10 deleterious(0) probably_damaging(0.984) TCGA-DD-AADB-01 10 6061403 6061403 A G IL2RA Missense_Mutation p.Y239H 0.27 tolerated(0.07) benign(0.287) TCGA-DD-AADB-01 10 71855484 71855484 C T H2AFY2 Silent p.A221A 0.19 TCGA-DD-AADB-01 11 1017614 1017614 G A MUC6 Silent p.T1729T 0.12 TCGA-DD-AADB-01 11 117651413 117651413 G T DSCAML1 Silent p.P113P 0.26 TCGA-DD-AADB-01 11 120831719 120831719 T G GRIK4 Missense_Mutation p.L659R 0.34 deleterious(0) probably_damaging(1) TCGA-DD-AADB-01 11 132812856 132812856 G T OPCML Missense_Mutation p.N44K 0.33 deleterious(0) probably_damaging(0.914) TCGA-DD-AADB-01 11 45203392 45203392 G T PRDM11 Silent p.T25T 0.36 TCGA-DD-AADB-01 11 45926375 45926375 A T MAPK8IP1 Missense_Mutation p.Q628L 0.31 tolerated(0.31) benign(0.002) TCGA-DD-AADB-01 11 4944735 4944735 A G OR51G1 Missense_Mutation p.S279P 0.31 deleterious(0.01) probably_damaging(0.953) TCGA-DD-AADB-01 11 56468271 56468271 C A OR9G1 Silent p.S136S 0.14 TCGA-DD-AADB-01 11 64627602 64627602 T C EHD1 Missense_Mutation p.M237V 0.33 deleterious(0) benign(0.111) TCGA-DD-AADB-01 11 64851412 64851412 C A CDCA5 Missense_Mutation p.Q13H 0.41 deleterious(0.02) possibly_damaging(0.572) TCGA-DD-AADB-01 11 65351982 65351982 A T EHBP1L1 Missense_Mutation p.N1093Y 0.42 deleterious(0) probably_damaging(0.992) TCGA-DD-AADB-01 11 67265681 67265681 C T PITPNM1 Missense_Mutation p.A533T 0.06 tolerated(0.18) benign(0.008) TCGA-DD-AADB-01 11 6816411 6816411 T A OR6A2 Missense_Mutation p.N177Y 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-DD-AADB-01 11 71906452 71906452 G A FOLR1 Silent p.Q102Q 0.39 TCGA-DD-AADB-01 11 73811676 73811676 T C C2CD3 Missense_Mutation p.N876D 0.31 tolerated(0.05) probably_damaging(1) TCGA-DD-AADB-01 11 8060265 8060265 G T TUB 5'UTR 0.18 TCGA-DD-AADB-01 12 107713276 107713276 T A BTBD11 Missense_Mutation p.S187T 0.34 deleterious(0) benign(0.184) TCGA-DD-AADB-01 12 109690864 109690864 C T ACACB Silent p.G1982G 0.26 TCGA-DD-AADB-01 12 123311062 123311062 G C CCDC62 3'UTR 0.36 TCGA-DD-AADB-01 12 123465272 123465272 C G ARL6IP4 Missense_Mutation p.S113C 0.21 tolerated_low_confidence(0.16) unknown(0) TCGA-DD-AADB-01 12 124796385 124796385 C T FAM101A 5'UTR 0.28 TCGA-DD-AADB-01 12 124796387 124796387 C T FAM101A 5'UTR 0.27 TCGA-DD-AADB-01 12 132445808 132445808 C A EP400 Missense_Mutation p.P215H 0.31 unknown(0) TCGA-DD-AADB-01 12 25272106 25272106 G C CASC1 Missense_Mutation p.P457A 0.39 deleterious(0) probably_damaging(1) TCGA-DD-AADB-01 12 38710649 38710649 A T ALG10B 5'UTR 0.42 TCGA-DD-AADB-01 12 49099564 49099564 T C CCNT1 Missense_Mutation p.D120G 0.37 deleterious(0) benign(0.435) TCGA-DD-AADB-01 12 52647088 52647088 C A KRT7 3'Flank 0.30 TCGA-DD-AADB-01 12 57472462 57472462 C T TMEM194A Missense_Mutation p.G23R 0.28 tolerated_low_confidence(0.47) benign(0.009) TCGA-DD-AADB-01 12 91501990 91501990 A G LUM Missense_Mutation p.L256P 0.26 deleterious(0) probably_damaging(0.999) TCGA-DD-AADB-01 13 35516948 35516948 A T NBEA 5'UTR 0.46 TCGA-DD-AADB-01 13 35632909 35632909 T G NBEA Missense_Mutation p.F383C 0.06 deleterious(0) probably_damaging(1) TCGA-DD-AADB-01 13 35770382 35770382 C A NBEA Missense_Mutation p.P1770Q 0.34 tolerated_low_confidence(0.59) benign(0.01) TCGA-DD-AADB-01 13 46946671 46946671 G A KIAA0226L 5'UTR 0.23 TCGA-DD-AADB-01 14 23872640 23872640 G A MYH6 Missense_Mutation p.S272F 0.34 deleterious(0) probably_damaging(0.985) TCGA-DD-AADB-01 14 35871070 35871070 T C NFKBIA 3'UTR 0.50 TCGA-DD-AADB-01 14 39716660 39716660 A G MIA2 Silent p.L294L 0.45 TCGA-DD-AADB-01 14 44974753 44974753 T A FSCB Missense_Mutation p.T480S 0.16 tolerated(0.14) benign(0.182) TCGA-DD-AADB-01 15 85341894 85341894 C T ZNF592 Missense_Mutation p.P938S 0.43 tolerated(0.18) benign(0.021) TCGA-DD-AADB-01 15 91500107 91500107 G A RCCD1 Nonsense_Mutation p.W48* 0.48 TCGA-DD-AADB-01 16 31273041 31273041 G A ITGAM Silent p.L19L 0.28 TCGA-DD-AADB-01 16 46761274 46761274 C T MYLK3 Silent p.E596E 0.38 TCGA-DD-AADB-01 16 65032623 65032623 G T CDH11 Missense_Mutation p.A122D 0.49 deleterious(0) probably_damaging(0.998) TCGA-DD-AADB-01 16 68679130 68679130 G C CDH3 5'UTR 0.78 TCGA-DD-AADB-01 17 40049360 40049360 C A ACLY Silent p.V509V 0.26 TCGA-DD-AADB-01 17 42883161 42883161 G A GJC1 Silent p.L9L 0.22 TCGA-DD-AADB-01 17 48683348 48683348 G A CACNA1G Nonsense_Mutation p.W1462* 0.28 TCGA-DD-AADB-01 17 56082796 56082796 G T SRSF1 Missense_Mutation p.R240S 0.25 tolerated_low_confidence(0.58) unknown(0) TCGA-DD-AADB-01 17 61771085 61771085 G A MAP3K3 Missense_Mutation p.R641K 0.29 deleterious(0) probably_damaging(1) TCGA-DD-AADB-01 17 62045561 62045561 C T SCN4A Silent p.P286P 0.20 TCGA-DD-AADB-01 17 67521046 67521046 A G MAP2K6 Missense_Mutation p.E223G 0.46 deleterious(0) probably_damaging(0.987) TCGA-DD-AADB-01 17 7577121 7577121 G T TP53 Missense_Mutation p.R273S 0.38 deleterious(0) probably_damaging(0.996) TCGA-DD-AADB-01 17 79637369 79637369 G A CCDC137 Missense_Mutation p.R128H 0.04 deleterious(0.01) possibly_damaging(0.471) TCGA-DD-AADB-01 18 346626 346626 C T COLEC12 Silent p.L332L 0.17 TCGA-DD-AADB-01 18 44126901 44126901 G A LOXHD1 Silent p.G46G 0.29 TCGA-DD-AADB-01 18 8718623 8718623 C T SOGA2 Nonsense_Mutation p.R59* 0.40 TCGA-DD-AADB-01 19 17361025 17361025 G A USHBP1 3'UTR 0.20 TCGA-DD-AADB-01 19 2353116 2353116 C A LLfos-48D6.1 Intron 0.16 TCGA-DD-AADB-01 19 23927260 23927260 C T ZNF681 Silent p.K364K 0.31 TCGA-DD-AADB-01 19 38375654 38375654 A G WDR87 Missense_Mutation p.L2847S 0.21 unknown(0) TCGA-DD-AADB-01 19 38885051 38885051 G T SPRED3 Intron 0.09 TCGA-DD-AADB-01 19 39299453 39299453 C T LGALS4 Silent p.K90K 0.16 TCGA-DD-AADB-01 19 41949917 41949917 C T C19orf69 Silent p.L61L 0.22 TCGA-DD-AADB-01 19 44015587 44015587 A T ETHE1 Splice_Site p.X169_splice 0.30 TCGA-DD-AADB-01 19 51986563 51986563 C T CEACAM18 Silent p.S383S 0.36 TCGA-DD-AADB-01 19 54759290 54759290 G T LILRB5 Missense_Mutation p.P271T 0.29 tolerated(0.32) possibly_damaging(0.51) TCGA-DD-AADB-01 19 56895232 56895232 C T ZNF582 Silent p.%3D 0.45 TCGA-DD-AADB-01 19 58004589 58004589 C G ZNF419 Missense_Mutation p.Q223E 0.22 deleterious(0) possibly_damaging(0.635) TCGA-DD-AADB-01 19 59010879 59010879 G A SLC27A5 Silent p.D549D 0.23 TCGA-DD-AADB-01 19 8436287 8436287 C A ANGPTL4 Missense_Mutation p.P307H 0.27 deleterious(0) probably_damaging(0.982) TCGA-DD-AADB-01 1 10523576 10523576 T C DFFA Silent p.Q181Q 0.50 TCGA-DD-AADB-01 1 110033758 110033758 T A ATXN7L2 Missense_Mutation p.C525S 0.24 tolerated(0.66) benign(0.025) TCGA-DD-AADB-01 1 152883884 152883884 G A IVL Silent p.K537K 0.24 TCGA-DD-AADB-01 1 156503902 156503902 C G IQGAP3 Missense_Mutation p.E1258Q 0.30 deleterious(0.01) probably_damaging(0.978) TCGA-DD-AADB-01 1 156815496 156815496 G T INSRR Missense_Mutation p.Q697K 0.24 tolerated(0.42) benign(0.075) TCGA-DD-AADB-01 1 160093074 160093074 A G ATP1A2 Silent p.T83T 0.30 TCGA-DD-AADB-01 1 175048844 175048844 G A TNN Splice_Site p.X262_splice 0.34 TCGA-DD-AADB-01 1 200946389 200946389 T C KIF21B Missense_Mutation p.M1426V 0.31 tolerated(0.84) benign(0.001) TCGA-DD-AADB-01 1 202273760 202273760 T A LGR6 Splice_Site p.X357_splice 0.22 TCGA-DD-AADB-01 1 205568372 205568372 C - MFSD4 Frame_Shift_Del p.P495Hfs*24 0.24 TCGA-DD-AADB-01 1 209961787 209961787 G A IRF6 Missense_Mutation p.P461L 0.34 deleterious(0.02) benign(0.007) TCGA-DD-AADB-01 1 212977961 212977961 G C TATDN3 Missense_Mutation p.G152A 0.32 tolerated(0.18) possibly_damaging(0.735) TCGA-DD-AADB-01 1 213181634 213181634 T C ANGEL2 Missense_Mutation p.Y187C 0.25 deleterious(0) probably_damaging(1) TCGA-DD-AADB-01 1 223284946 223284946 T C TLR5 Silent p.E476E 0.12 TCGA-DD-AADB-01 1 228399589 228399589 T G OBSCN Silent p.G35G 0.24 TCGA-DD-AADB-01 1 234565278 234565278 G A TARBP1 Silent p.L919L 0.24 TCGA-DD-AADB-01 1 238045816 238045816 G T ZP4 Missense_Mutation p.A510E 0.39 deleterious(0.05) possibly_damaging(0.764) TCGA-DD-AADB-01 1 247200611 247200611 C T ZNF670 3'UTR 0.20 TCGA-DD-AADB-01 1 40366890 40366890 C A MYCL Missense_Mutation p.A103S 0.26 tolerated(0.74) benign(0.1) TCGA-DD-AADB-01 1 53553703 53553703 C T SLC1A7 Missense_Mutation p.S554N 0.56 tolerated_low_confidence(1) benign(0.001) TCGA-DD-AADB-01 1 99167435 99167435 C G SNX7 Silent p.T367T 0.32 TCGA-DD-AADB-01 20 15967381 15967381 A T MACROD2 Missense_Mutation p.N332I 0.35 deleterious_low_confidence(0) possibly_damaging(0.632) TCGA-DD-AADB-01 20 47271890 47271890 G T PREX1 Missense_Mutation p.P716Q 0.33 deleterious(0.04) possibly_damaging(0.809) TCGA-DD-AADB-01 21 41032560 41032560 T C B3GALT5 Missense_Mutation p.M25T 0.28 tolerated(0.26) benign(0.004) TCGA-DD-AADB-01 22 32633303 32633303 C T SLC5A4 Missense_Mutation p.A198T 0.33 tolerated(0.23) benign(0.248) TCGA-DD-AADB-01 22 44527389 44527389 G C PARVB Silent p.L166L 0.14 TCGA-DD-AADB-01 2 160879323 160879323 T C PLA2R1 Missense_Mutation p.N383D 0.31 tolerated(0.2) benign(0.002) TCGA-DD-AADB-01 2 160901376 160901376 A C PLA2R1 Missense_Mutation p.H134Q 0.13 tolerated(0.72) benign(0) TCGA-DD-AADB-01 2 17962727 17962727 G T GEN1 Missense_Mutation p.V750F 0.36 deleterious(0.02) benign(0.169) TCGA-DD-AADB-01 2 210650854 210650854 G T UNC80 Missense_Mutation p.R222I 0.42 possibly_damaging(0.862) TCGA-DD-AADB-01 2 212495254 212495254 A G ERBB4 Missense_Mutation p.F671S 0.34 deleterious(0.01) benign(0.09) TCGA-DD-AADB-01 2 215890440 215890440 T C ABCA12 Missense_Mutation p.Y415C 0.29 tolerated(0.14) possibly_damaging(0.469) TCGA-DD-AADB-01 2 242684139 242684139 A G D2HGDH Missense_Mutation p.T234A 0.07 deleterious(0.03) benign(0.213) TCGA-DD-AADB-01 2 25364302 25364302 G A EFR3B Missense_Mutation p.R641K 0.36 tolerated(1) benign(0.008) TCGA-DD-AADB-01 2 27261574 27261574 A G TMEM214 Missense_Mutation p.Q433R 0.35 tolerated(1) probably_damaging(0.932) TCGA-DD-AADB-01 2 50573856 50573856 A G NRXN1 Intron 0.34 TCGA-DD-AADB-01 2 5832798 5832798 G T SOX11 5'Flank 0.18 TCGA-DD-AADB-01 2 66664888 66664888 A G MEIS1 Missense_Mutation p.Y11C 0.32 deleterious(0) probably_damaging(0.928) TCGA-DD-AADB-01 2 73680731 73680731 T A ALMS1 Silent p.V2358V 0.15 TCGA-DD-AADB-01 2 74782367 74782367 C T DOK1 Silent p.S49S 0.04 TCGA-DD-AADB-01 3 140695388 140695388 A G SLC25A36 3'UTR 0.28 TCGA-DD-AADB-01 3 148924011 148924011 G C CP Missense_Mutation p.N384K 0.24 tolerated(0.07) benign(0.291) TCGA-DD-AADB-01 3 149468548 149468548 T C COMMD2 Missense_Mutation p.R107G 0.26 deleterious(0.01) possibly_damaging(0.597) TCGA-DD-AADB-01 3 193029669 193029669 T A ATP13A5 Missense_Mutation p.H794L 0.32 deleterious(0) possibly_damaging(0.869) TCGA-DD-AADB-01 3 43743957 43743957 G A ABHD5 Silent p.E128E 0.35 TCGA-DD-AADB-01 3 46400827 46400827 T C CCR2 Intron 0.44 TCGA-DD-AADB-01 3 46416502 46416502 G T CCR5 3'UTR 0.06 TCGA-DD-AADB-01 3 48624721 48624721 C T COL7A1 Missense_Mutation p.R1014Q 0.36 unknown(0) TCGA-DD-AADB-01 3 93781836 93781836 G T NSUN3 5'UTR 0.35 TCGA-DD-AADB-01 3 97852199 97852199 T A OR5H1 Missense_Mutation p.F220I 0.28 tolerated(0.2) benign(0.008) TCGA-DD-AADB-01 4 102951351 102951351 G C BANK1 Missense_Mutation p.R610T 0.04 deleterious(0) probably_damaging(0.996) TCGA-DD-AADB-01 4 115754812 115754812 G T NDST4 Silent p.V782V 0.09 TCGA-DD-AADB-01 4 145038020 145038020 C T GYPA Missense_Mutation p.R115H 0.37 tolerated(0.1) possibly_damaging(0.885) TCGA-DD-AADB-01 4 177249473 177249473 A G SPCS3 Missense_Mutation p.S179G 0.17 deleterious_low_confidence(0.01) benign(0.074) TCGA-DD-AADB-01 4 25678360 25678360 A G SLC34A2 Missense_Mutation p.T688A 0.46 deleterious_low_confidence(0.01) benign(0.001) TCGA-DD-AADB-01 4 74285969 74286005 AGGGTAAAAAACTTGTTGCTGCAAGTCAAGCTGCCTT - ALB Splice_Site p.X596_splice 0.24 TCGA-DD-AADB-01 5 118560447 118560447 A G DMXL1 Missense_Mutation p.H2753R 0.25 deleterious(0.01) benign(0.076) TCGA-DD-AADB-01 5 137625188 137625188 A G CDC25C Splice_Site p.X309_splice 0.17 TCGA-DD-AADB-01 5 140236128 140236128 A G PCDHA10 Silent p.A165A 0.19 TCGA-DD-AADB-01 5 142680245 142680245 T A NR3C1 Nonsense_Mutation p.K519* 0.15 TCGA-DD-AADB-01 5 14280471 14280471 G C TRIO Silent p.P91P 0.09 TCGA-DD-AADB-01 5 1882113 1882113 C G IRX4 Missense_Mutation p.D36H 0.26 deleterious(0) benign(0.019) TCGA-DD-AADB-01 5 33892119 33892119 T C ADAMTS12 5'UTR 0.38 TCGA-DD-AADB-01 5 43280745 43280745 C A NIM1K Missense_Mutation p.P409T 0.33 tolerated(0.42) benign(0.014) TCGA-DD-AADB-01 5 79285983 79285983 C T MTX3 Silent p.Q15Q 0.22 TCGA-DD-AADB-01 6 18130696 18130696 C G TPMT 3'UTR 0.23 TCGA-DD-AADB-01 6 27782903 27782903 A T HIST1H2BM Nonsense_Mutation p.K28* 0.40 TCGA-DD-AADB-01 6 31846775 31846775 G C SLC44A4 5'UTR 0.30 TCGA-DD-AADB-01 6 39867896 39867896 A C DAAM2 Missense_Mutation p.K908T 0.24 deleterious(0.03) benign(0.092) TCGA-DD-AADB-01 6 46982578 46982578 G T GPR110 Missense_Mutation p.Q256K 0.26 tolerated(0.2) benign(0.055) TCGA-DD-AADB-01 6 46982580 46982580 G C GPR110 Missense_Mutation p.A255G 0.29 deleterious(0) benign(0.059) TCGA-DD-AADB-01 6 52270081 52270081 C A PAQR8 3'UTR 0.08 TCGA-DD-AADB-01 7 106509974 106509974 T C PIK3CG Silent p.V656V 0.24 TCGA-DD-AADB-01 7 121651010 121651010 C A PTPRZ1 Nonsense_Mutation p.S637* 0.33 TCGA-DD-AADB-01 7 141762461 141762461 C T MGAM Nonsense_Mutation p.Q1406* 0.30 TCGA-DD-AADB-01 7 150945687 150945687 C T SMARCD3 5'UTR 0.27 TCGA-DD-AADB-01 7 158715163 158715163 G C WDR60 Missense_Mutation p.D673H 0.47 deleterious(0.01) probably_damaging(0.953) TCGA-DD-AADB-01 7 19812310 19812310 T C TMEM196 Missense_Mutation p.S4G 0.36 deleterious_low_confidence(0) benign(0.294) TCGA-DD-AADB-01 7 20824970 20824970 C T SP8 Missense_Mutation p.G156S 0.07 tolerated(0.76) benign(0.007) TCGA-DD-AADB-01 7 31735086 31735086 A G PPP1R17 Missense_Mutation p.D29G 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.603) TCGA-DD-AADB-01 7 40102432 40102432 T A CDK13 Missense_Mutation p.Y870N 0.13 deleterious(0) probably_damaging(0.954) TCGA-DD-AADB-01 7 43684913 43684913 A G COA1 Silent p.P67P 0.34 TCGA-DD-AADB-01 7 47476876 47476876 C T TNS3 Silent p.T62T 0.33 TCGA-DD-AADB-01 7 48327638 48327638 C T ABCA13 Missense_Mutation p.A2973V 0.19 benign(0.038) TCGA-DD-AADB-01 7 55224558 55224558 G T EGFR Intron 0.04 TCGA-DD-AADB-01 7 74565257 74565257 G A GTF2IRD2B 3'UTR 0.33 TCGA-DD-AADB-01 7 81591327 81591327 T C CACNA2D1 Missense_Mutation p.D950G 0.24 tolerated(0.37) possibly_damaging(0.583) TCGA-DD-AADB-01 7 82072857 82072857 A G CACNA2D1 5'UTR 0.26 TCGA-DD-AADB-01 7 82585807 82585807 G A PCLO Missense_Mutation p.P1488S 0.27 unknown(0) TCGA-DD-AADB-01 8 143427217 143427217 T C TSNARE1 Missense_Mutation p.H42R 0.58 deleterious_low_confidence(0) possibly_damaging(0.723) TCGA-DD-AADB-01 8 144993679 144993679 C T PLEC Missense_Mutation p.R3574K 0.16 benign(0.006) TCGA-DD-AADB-01 8 145619689 145619689 T C CPSF1 Missense_Mutation p.S1217G 0.50 deleterious(0) possibly_damaging(0.534) TCGA-DD-AADB-01 8 91094273 91094273 G T CALB1 Missense_Mutation p.A46E 0.53 tolerated(0.07) possibly_damaging(0.693) TCGA-DD-AADB-01 9 100617453 100617453 T C FOXE1 3'UTR 0.29 TCGA-DD-AADB-01 9 113192616 113192616 C T SVEP1 Missense_Mutation p.G1823E 0.24 possibly_damaging(0.651) TCGA-DD-AADB-01 9 114213837 114213837 T C KIAA0368 Splice_Site p.X186_splice 0.29 TCGA-DD-AADB-01 9 114325430 114325430 T C PTGR1 Missense_Mutation p.N321D 0.29 deleterious(0) probably_damaging(0.965) TCGA-DD-AADB-01 9 124906393 124906393 T C NDUFA8 3'UTR 0.43 TCGA-DD-AADB-01 9 125659766 125659766 C T RC3H2 Nonsense_Mutation p.W8* 0.27 TCGA-DD-AADB-01 9 132630495 132630495 G T USP20 Missense_Mutation p.G301V 0.25 tolerated(0.57) benign(0.005) TCGA-DD-AADB-01 9 139648897 139648897 G T LCN8 3'UTR 0.20 TCGA-DD-AADB-01 9 22029453 22029453 A T CDKN2B-AS1 RNA 0.40 TCGA-DD-AADB-01 9 27157869 27157869 C T TEK Silent p.S31S 0.32 TCGA-DD-AADB-01 9 35045263 35045263 G A C9orf131 Silent p.R879R 0.22 TCGA-DD-AADB-01 9 40705951 40705951 G T SPATA31A3 Missense_Mutation p.S1203I 0.33 tolerated(0.21) probably_damaging(0.975) TCGA-DD-AADB-01 9 67968395 67968395 A G ANKRD20A1 Missense_Mutation p.K652E 0.16 tolerated(0.28) benign(0) TCGA-DD-AADB-01 9 79441528 79441528 T C PRUNE2 Missense_Mutation p.N210S 0.08 tolerated(1) benign(0.01) TCGA-DD-AADB-01 X 155169406 155169406 C A VAMP7 Missense_Mutation p.H159N 0.28 deleterious(0.04) benign(0) TCGA-DD-AADB-01 X 47842435 47842435 T C ZNF182 Missense_Mutation p.Q68R 0.11 deleterious(0.01) benign(0) TCGA-DD-AADB-01 X 71358362 71358362 C A NHSL2 Missense_Mutation p.P322T 0.48 deleterious(0.01) benign(0.004) TCGA-DD-AADB-01 X 80377157 80377157 G C HMGN5 5'UTR 0.49 TCGA-DD-AADC-01 10 104497659 104497659 T C SFXN2 3'UTR 0.33 TCGA-DD-AADC-01 10 134595384 134595384 G A INPP5A Missense_Mutation p.R393Q 0.34 tolerated(0.11) possibly_damaging(0.602) TCGA-DD-AADC-01 10 79397504 79397504 C T KCNMA1 5'Flank 0.58 TCGA-DD-AADC-01 10 84118543 84118543 G T NRG3 Missense_Mutation p.R291L 0.30 tolerated(0.13) benign(0.197) TCGA-DD-AADC-01 11 1262639 1262639 C A MUC5B Missense_Mutation p.T1510K 0.36 unknown(0) TCGA-DD-AADC-01 11 126316746 126316746 G A KIRREL3 Missense_Mutation p.L345F 0.30 tolerated(0.35) possibly_damaging(0.876) TCGA-DD-AADC-01 11 61032665 61032665 G A VWCE Missense_Mutation p.S662F 0.29 deleterious(0.01) probably_damaging(0.941) TCGA-DD-AADC-01 11 61511843 61511843 C A DAGLA Missense_Mutation p.T1004K 0.36 deleterious_low_confidence(0) benign(0.081) TCGA-DD-AADC-01 11 6643664 6643664 G A DCHS1 Silent p.C3081C 0.40 TCGA-DD-AADC-01 11 6662342 6662342 C T DCHS1 Missense_Mutation p.R168H 0.37 tolerated(0.56) benign(0.003) TCGA-DD-AADC-01 11 7064609 7064609 G T NLRP14 Missense_Mutation p.G451V 0.40 deleterious(0.01) possibly_damaging(0.894) TCGA-DD-AADC-01 11 794852 794852 T A SLC25A22 Missense_Mutation p.T24S 0.30 tolerated(0.29) probably_damaging(0.999) TCGA-DD-AADC-01 12 116413042 116413042 T C MED13L Missense_Mutation p.M1889V 0.42 tolerated(0.09) benign(0.111) TCGA-DD-AADC-01 12 32777603 32777603 T G FGD4 Intron 0.41 TCGA-DD-AADC-01 12 48388212 48388212 G T COL2A1 Missense_Mutation p.P271T 0.29 unknown(0) TCGA-DD-AADC-01 12 49412616 49412616 C G PRKAG1 5'Flank 0.33 TCGA-DD-AADC-01 12 78515815 78515815 T C NAV3 Missense_Mutation p.L1282S 0.34 tolerated(0.1) probably_damaging(1) TCGA-DD-AADC-01 12 83379701 83379701 C T TMTC2 Intron 0.30 TCGA-DD-AADC-01 14 24045590 24045590 G T JPH4 Missense_Mutation p.A152E 0.25 deleterious(0) possibly_damaging(0.89) TCGA-DD-AADC-01 14 29236691 29236691 C A FOXG1 Missense_Mutation p.P69Q 0.05 tolerated_low_confidence(0.1) unknown(0) TCGA-DD-AADC-01 14 29236703 29236703 A C FOXG1 Missense_Mutation p.Q73P 0.06 deleterious_low_confidence(0.02) unknown(0) TCGA-DD-AADC-01 14 63881864 63881864 T C PPP2R5E Silent p.V181V 0.31 TCGA-DD-AADC-01 14 81743600 81743600 G A STON2 Silent p.T685T 0.61 TCGA-DD-AADC-01 14 86091296 86091296 C A FLRT2 3'UTR 0.31 TCGA-DD-AADC-01 15 72118837 72118837 T C MYO9A 3'UTR 0.36 TCGA-DD-AADC-01 15 90286658 90286658 T C WDR93 3'UTR 0.29 TCGA-DD-AADC-01 16 10631932 10631932 C A EMP2 Splice_Site p.X57_splice 0.39 TCGA-DD-AADC-01 16 15501708 15501708 C T MPV17L Nonsense_Mutation p.Q137* 0.40 TCGA-DD-AADC-01 16 69377404 69377404 A C TMED6 Missense_Mutation p.L210R 0.03 deleterious(0.01) probably_damaging(0.941) TCGA-DD-AADC-01 16 88494565 88494565 C A ZNF469 Silent p.A229A 0.40 TCGA-DD-AADC-01 17 10206563 10206563 C T MYH13 Missense_Mutation p.D1873N 0.37 tolerated(0.05) benign(0.007) TCGA-DD-AADC-01 17 20135682 20135682 G A SPECC1 Missense_Mutation p.G772D 0.31 deleterious(0.02) possibly_damaging(0.493) TCGA-DD-AADC-01 17 26731821 26731821 G T SLC46A1 Nonsense_Mutation p.C298* 0.50 TCGA-DD-AADC-01 17 26946763 26946763 G C KIAA0100 Missense_Mutation p.L1851V 0.28 deleterious(0) possibly_damaging(0.888) TCGA-DD-AADC-01 17 4719981 4719981 G A PLD2 Missense_Mutation p.G508S 0.48 deleterious(0) possibly_damaging(0.553) TCGA-DD-AADC-01 17 56707834 56707834 T A TEX14 Missense_Mutation p.D73V 0.20 deleterious(0) probably_damaging(0.997) TCGA-DD-AADC-01 17 7578555 7578555 C T TP53 Splice_Site p.X126_splice 0.51 TCGA-DD-AADC-01 17 8049994 8049994 C A PER1 Missense_Mutation p.A609S 0.10 tolerated(0.38) benign(0.002) TCGA-DD-AADC-01 17 9632413 9632413 A C USP43 3'UTR 0.33 TCGA-DD-AADC-01 18 28598662 28598662 A C DSC3 Missense_Mutation p.N349K 0.29 deleterious(0) probably_damaging(0.998) TCGA-DD-AADC-01 18 44268787 44268787 G T ST8SIA5 Missense_Mutation p.T136N 0.52 benign(0.012) TCGA-DD-AADC-01 18 77662651 77662651 G A PQLC1 3'UTR 0.27 TCGA-DD-AADC-01 18 9117876 9117876 A G NDUFV2 Missense_Mutation p.N32S 0.28 tolerated(0.73) benign(0.001) TCGA-DD-AADC-01 19 17017877 17017877 C T CPAMD8 Silent p.A1351A 0.54 TCGA-DD-AADC-01 19 17972267 17972267 G T RPL18A Missense_Mutation p.V62F 0.38 deleterious(0) probably_damaging(0.94) TCGA-DD-AADC-01 19 22156515 22156515 T C ZNF208 Missense_Mutation p.M441V 0.20 tolerated(0.48) benign(0.001) TCGA-DD-AADC-01 19 34791659 34791659 G A KIAA0355 Missense_Mutation p.S94N 0.46 deleterious_low_confidence(0.02) probably_damaging(0.916) TCGA-DD-AADC-01 19 36499653 36499653 C A SYNE4 5'UTR 0.20 TCGA-DD-AADC-01 19 39034235 39034235 A C RYR1 Silent p.R3948R 0.15 TCGA-DD-AADC-01 19 43236995 43236995 C T PSG3 Missense_Mutation p.C217Y 0.60 deleterious(0) probably_damaging(1) TCGA-DD-AADC-01 19 45656158 45656158 C A NKPD1 Missense_Mutation p.D513Y 0.53 deleterious(0) probably_damaging(0.998) TCGA-DD-AADC-01 19 46338486 46338486 C A SYMPK Missense_Mutation p.V415F 0.14 deleterious(0) possibly_damaging(0.903) TCGA-DD-AADC-01 19 46914269 46914269 A G CCDC8 3'UTR 0.67 TCGA-DD-AADC-01 19 49232728 49232728 G A RASIP1 Silent p.I433I 0.21 TCGA-DD-AADC-01 19 56090898 56090899 - C ZNF579 Frame_Shift_Ins p.A37Rfs*5 0.13 TCGA-DD-AADC-01 19 6464770 6464770 C G CRB3 Missense_Mutation p.R20G 0.46 tolerated_low_confidence(0.28) possibly_damaging(0.858) TCGA-DD-AADC-01 1 112309297 112309297 C A DDX20 Missense_Mutation p.Q751K 0.28 tolerated_low_confidence(0.57) benign(0.001) TCGA-DD-AADC-01 1 152279113 152279113 G C FLG Missense_Mutation p.S2750C 0.21 probably_damaging(0.984) TCGA-DD-AADC-01 1 153788806 153788806 C A GATAD2B Nonsense_Mutation p.E387* 0.50 TCGA-DD-AADC-01 1 155720274 155720274 G C GON4L 3'UTR 0.24 TCGA-DD-AADC-01 1 161138218 161138218 T C PPOX Intron 0.27 TCGA-DD-AADC-01 1 175067569 175067569 C T TNN Missense_Mutation p.R653C 0.49 deleterious(0.02) possibly_damaging(0.903) TCGA-DD-AADC-01 1 193028752 193028752 G T TROVE2 5'Flank 0.50 TCGA-DD-AADC-01 1 236646851 236646851 C T EDARADD 3'Flank 0.25 TCGA-DD-AADC-01 1 243589739 243589739 G T SDCCAG8 Missense_Mutation p.A622S 0.35 tolerated(0.85) benign(0.028) TCGA-DD-AADC-01 1 244218178 244218178 G T ZBTB18 Missense_Mutation p.V368F 0.46 deleterious(0.02) probably_damaging(0.935) TCGA-DD-AADC-01 1 249142142 249142142 G C ZNF672 Silent p.G223G 0.25 TCGA-DD-AADC-01 1 46088962 46088962 C T CCDC17 Silent p.A140A 0.55 TCGA-DD-AADC-01 1 54474628 54474628 C A LDLRAD1 3'UTR 0.34 TCGA-DD-AADC-01 20 20349969 20349969 G T INSM1 Missense_Mutation p.S353I 0.33 deleterious(0) benign(0.403) TCGA-DD-AADC-01 20 46365492 46365492 T C SULF2 Missense_Mutation p.S124G 0.38 deleterious(0.02) benign(0.002) TCGA-DD-AADC-01 21 47851867 47851867 G T PCNT Missense_Mutation p.C2830F 0.50 benign(0.003) TCGA-DD-AADC-01 22 19839750 19839750 C T C22orf29 Missense_Mutation p.R12H 0.31 tolerated_low_confidence(0.22) possibly_damaging(0.614) TCGA-DD-AADC-01 2 160654643 160654643 C A CD302 Missense_Mutation p.D23Y 0.33 deleterious(0) probably_damaging(0.935) TCGA-DD-AADC-01 2 173355794 173355794 C G ITGA6 Missense_Mutation p.Q908E 0.33 tolerated(0.7) benign(0.005) TCGA-DD-AADC-01 2 197738476 197738476 G C PGAP1 Missense_Mutation p.S478C 0.32 deleterious(0) possibly_damaging(0.75) TCGA-DD-AADC-01 2 64114716 64114716 A C UGP2 Missense_Mutation p.M418L 0.33 tolerated(0.41) benign(0.015) TCGA-DD-AADC-01 2 64176272 64176272 A G VPS54 Silent p.L346L 0.24 TCGA-DD-AADC-01 2 71576746 71576746 A - ZNF638 Frame_Shift_Del p.D222Ifs*36 0.20 TCGA-DD-AADC-01 3 13413350 13413350 C A NUP210 Silent p.V590V 0.36 TCGA-DD-AADC-01 3 142188996 142188997 - A ATR Frame_Shift_Ins p.Y2084Lfs*13 0.21 TCGA-DD-AADC-01 3 167750442 167750442 T C GOLIM4 Missense_Mutation p.M348V 0.18 deleterious(0) probably_damaging(0.995) TCGA-DD-AADC-01 3 195997368 195997368 C T PCYT1A Missense_Mutation p.R12K 0.18 tolerated(0.15) benign(0.008) TCGA-DD-AADC-01 3 48680218 48680218 A G CELSR3 Missense_Mutation p.S2836P 0.60 deleterious(0) possibly_damaging(0.905) TCGA-DD-AADC-01 3 71830662 71830662 G T PROK2 Missense_Mutation p.P60T 0.50 deleterious(0.01) probably_damaging(1) TCGA-DD-AADC-01 3 74548904 74548904 T C CNTN3 Missense_Mutation p.K30E 0.58 tolerated(0.13) benign(0.055) TCGA-DD-AADC-01 4 149115896 149115896 C A NR3C2 Splice_Site p.X672_splice 0.40 TCGA-DD-AADC-01 5 112175951 112175952 - A APC Frame_Shift_Ins p.T1556Nfs*3 0.27 TCGA-DD-AADC-01 5 139930054 139930054 T C SRA1 3'UTR 0.81 TCGA-DD-AADC-01 5 140595273 140595273 G T PCDHB13 Silent p.G526G 0.66 TCGA-DD-AADC-01 5 140596187 140596187 C T PCDHB13 3'UTR 0.75 TCGA-DD-AADC-01 5 32087361 32087361 A G PDZD2 Silent p.A1269A 0.14 TCGA-DD-AADC-01 5 96062545 96062546 - A CAST Intron 0.35 TCGA-DD-AADC-01 6 12294631 12294631 A C EDN1 Missense_Mutation p.Q176P 0.45 tolerated_low_confidence(0.21) benign(0.029) TCGA-DD-AADC-01 6 138611075 138611075 A G KIAA1244 Missense_Mutation p.H1006R 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-DD-AADC-01 6 144086750 144086750 C T PHACTR2 Silent p.P349P 0.45 TCGA-DD-AADC-01 6 38885133 38885133 T C DNAH8 Missense_Mutation p.M3203T 0.40 benign(0.026) TCGA-DD-AADC-01 6 44197363 44197363 C A SLC29A1 Missense_Mutation p.S50Y 0.38 deleterious(0) possibly_damaging(0.463) TCGA-DD-AADC-01 6 7230408 7230408 G T RREB1 Silent p.T692T 0.49 TCGA-DD-AADC-01 7 106898762 106898762 C A COG5 Missense_Mutation p.A579S 0.29 tolerated(0.45) benign(0.012) TCGA-DD-AADC-01 7 152511709 152511709 A G ACTR3B Silent p.P137P 0.27 TCGA-DD-AADC-01 7 70255636 70255636 G A AUTS2 Missense_Mutation p.R1145Q 0.37 deleterious(0.01) probably_damaging(0.996) TCGA-DD-AADC-01 7 90044636 90044636 C T CLDN12 3'UTR 0.37 TCGA-DD-AADC-01 7 95019498 95019498 T C PON3 Missense_Mutation p.I57V 0.34 tolerated(0.17) benign(0.007) TCGA-DD-AADC-01 8 105503525 105503525 A G LRP12 Silent p.S652S 0.62 TCGA-DD-AADC-01 8 124664210 124664210 C G KLHL38 Silent p.P319P 0.39 TCGA-DD-AADC-01 8 133806672 133806673 - A PHF20L1 Frame_Shift_Ins p.I36Nfs*2 0.26 TCGA-DD-AADC-01 8 144900554 144900554 T C PUF60 Missense_Mutation p.M167V 0.60 tolerated(0.09) possibly_damaging(0.559) TCGA-DD-AADC-01 8 56668880 56668880 T C TMEM68 Missense_Mutation p.Y139C 0.30 deleterious(0) probably_damaging(1) TCGA-DD-AADC-01 8 74888508 74888508 A T TMEM70 5'UTR 0.59 TCGA-DD-AADC-01 8 87951908 87951908 T C CNBD1 Silent p.H119H 0.19 TCGA-DD-AADC-01 8 88885852 88885852 C A DCAF4L2 Silent p.P116P 0.20 TCGA-DD-AADC-01 8 99129420 99129420 C G HRSP12 5'UTR 0.07 TCGA-DD-AADC-01 9 134477527 134477527 C G RAPGEF1 Missense_Mutation p.A640P 0.30 tolerated(0.15) benign(0.007) TCGA-DD-AADC-01 9 139301664 139301664 T C SDCCAG3 Missense_Mutation p.D251G 0.33 deleterious(0.03) benign(0.209) TCGA-DD-AADC-01 9 15469957 15469957 T A PSIP1 Nonsense_Mutation p.K338* 0.38 TCGA-DD-AADC-01 9 19316742 19316742 C T DENND4C Missense_Mutation p.A571V 0.45 deleterious(0) probably_damaging(0.956) TCGA-DD-AADC-01 9 711598 711598 G C KANK1 Missense_Mutation p.E278Q 0.59 deleterious(0) probably_damaging(1) TCGA-DD-AADC-01 9 84549103 84549103 A T RP11-383M4.6 Intron 0.31 TCGA-DD-AADC-01 X 106890949 106890949 A G PRPS1 Missense_Mutation p.N273S 0.04 deleterious(0.01) probably_damaging(0.966) TCGA-DD-AADC-01 X 11316227 11316227 C G AMELX Nonsense_Mutation p.S36* 0.41 TCGA-DD-AADC-01 X 12940017 12940017 G C TLR8 Missense_Mutation p.S953T 0.80 tolerated(0.35) benign(0.17) TCGA-DD-AADC-01 X 136112559 136112559 C T GPR101 Silent p.V425V 0.75 TCGA-DD-AADC-01 X 153033156 153033156 G T PLXNB3 Missense_Mutation p.A315S 0.76 tolerated(0.07) probably_damaging(0.994) TCGA-DD-AADD-01 10 115966040 115966040 T A TDRD1 Nonsense_Mutation p.Y445* 0.72 TCGA-DD-AADD-01 11 121458790 121458790 C A SORL1 Missense_Mutation p.H1292Q 0.50 tolerated(1) benign(0.001) TCGA-DD-AADD-01 11 129754739 129754739 G A NFRKB Missense_Mutation p.L240F 0.27 tolerated(0.07) unknown(0) TCGA-DD-AADD-01 11 4967515 4967515 G C OR51A4 Silent p.L272L 0.07 TCGA-DD-AADD-01 11 55703134 55703134 G T OR5I1 Missense_Mutation p.T248N 0.27 deleterious(0) probably_damaging(0.929) TCGA-DD-AADD-01 11 58949569 58949569 C T DTX4 Missense_Mutation p.S190F 0.47 deleterious(0.03) benign(0.372) TCGA-DD-AADD-01 11 65302729 65302729 A C SCYL1 Missense_Mutation p.E421A 0.28 tolerated(0.15) benign(0.186) TCGA-DD-AADD-01 11 6622002 6622002 G A RRP8 Missense_Mutation p.P351S 0.60 deleterious(0.01) probably_damaging(0.963) TCGA-DD-AADD-01 11 94278040 94278040 C A FUT4 Silent p.P247P 0.10 TCGA-DD-AADD-01 11 96125619 96125619 A G JRKL 3'UTR 0.27 TCGA-DD-AADD-01 12 121088386 121088386 C G CABP1 Intron 0.24 TCGA-DD-AADD-01 12 133732822 133732822 C T ZNF10 Silent p.F330F 0.30 TCGA-DD-AADD-01 12 39735325 39735325 A C KIF21A Missense_Mutation p.S635A 0.31 tolerated(0.08) probably_damaging(0.977) TCGA-DD-AADD-01 12 43826591 43826591 T C ADAMTS20 Missense_Mutation p.E915G 0.27 deleterious(0) possibly_damaging(0.691) TCGA-DD-AADD-01 12 44149046 44149046 C A PUS7L Translation_Start_Site p.M1? 0.64 deleterious(0) probably_damaging(0.99) TCGA-DD-AADD-01 12 50344682 50344682 C A AQP2 Missense_Mutation p.F23L 0.18 deleterious(0.01) possibly_damaging(0.614) TCGA-DD-AADD-01 12 51064971 51064971 A G DIP2B Missense_Mutation p.T144A 0.28 deleterious(0.04) possibly_damaging(0.622) TCGA-DD-AADD-01 12 56755136 56755136 C T APOF Missense_Mutation p.S285N 0.05 tolerated(0.15) benign(0.021) TCGA-DD-AADD-01 12 5841762 5841762 C T ANO2 Missense_Mutation p.R490Q 0.69 tolerated(0.64) possibly_damaging(0.814) TCGA-DD-AADD-01 12 66786264 66786264 G A GRIP1 Missense_Mutation p.P711L 0.61 deleterious(0.02) benign(0.098) TCGA-DD-AADD-01 12 6961443 6961443 T G USP5 Missense_Mutation p.F34V 0.52 deleterious(0) benign(0.313) TCGA-DD-AADD-01 12 73014936 73014936 C A TRHDE Missense_Mutation p.P795T 0.55 tolerated(0.51) possibly_damaging(0.87) TCGA-DD-AADD-01 12 8866531 8866531 A G RIMKLB Silent p.Q23Q 0.09 TCGA-DD-AADD-01 13 112725179 112725179 C T SOX1 3'UTR 0.58 TCGA-DD-AADD-01 14 31355229 31355229 T G COCH Silent p.T396T 0.87 TCGA-DD-AADD-01 14 45618114 45618114 G T FANCM Missense_Mutation p.L278F 0.85 tolerated(0.06) possibly_damaging(0.682) TCGA-DD-AADD-01 14 91943274 91943274 A T SMEK1 Missense_Mutation p.D324E 0.82 tolerated(0.27) benign(0.048) TCGA-DD-AADD-01 15 29406146 29406146 A G APBA2 Missense_Mutation p.E702G 0.48 deleterious(0) probably_damaging(0.991) TCGA-DD-AADD-01 15 34651465 34651465 C T LPCAT4 Missense_Mutation p.G480R 0.42 tolerated(0.88) benign(0.001) TCGA-DD-AADD-01 15 41388517 41388517 T A INO80 5'UTR 0.41 TCGA-DD-AADD-01 15 42536362 42536362 T C TMEM87A Missense_Mutation p.M170V 0.43 tolerated(0.43) benign(0.002) TCGA-DD-AADD-01 15 45437208 45437208 T A DUOX1 Missense_Mutation p.M751K 0.47 tolerated(0.09) benign(0.004) TCGA-DD-AADD-01 15 53992110 53992110 G A WDR72 Silent p.C534C 0.39 TCGA-DD-AADD-01 15 75142867 75142867 T C SCAMP2 Missense_Mutation p.Y207C 0.42 deleterious(0) probably_damaging(1) TCGA-DD-AADD-01 15 79092561 79092561 C A ADAMTS7 Silent p.L143L 0.44 TCGA-DD-AADD-01 15 94945835 94945835 C A MCTP2 Intron 0.29 TCGA-DD-AADD-01 16 29086323 29086323 T A RRN3P2 5'Flank 0.47 TCGA-DD-AADD-01 16 58568155 58568155 T A CNOT1 Nonsense_Mutation p.K1931* 0.44 TCGA-DD-AADD-01 17 30207638 30207638 C A UTP6 Missense_Mutation p.E307D 0.44 tolerated(0.1) benign(0.03) TCGA-DD-AADD-01 17 37187987 37187987 C A CTD-2206N4.2 5'Flank 0.80 TCGA-DD-AADD-01 17 41599464 41599471 AAGGCCAT - DHX8 Frame_Shift_Del p.K1105Lfs*7 0.27 TCGA-DD-AADD-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.88 deleterious(0) probably_damaging(1) TCGA-DD-AADD-01 18 33775294 33775294 A T MOCOS Missense_Mutation p.M73L 0.50 tolerated(0.77) benign(0.001) TCGA-DD-AADD-01 18 59757812 59757812 C T PIGN Splice_Site p.X727_splice 0.28 TCGA-DD-AADD-01 18 7016605 7016605 G A LAMA1 Silent p.S958S 0.52 TCGA-DD-AADD-01 19 16612008 16612009 - T C19orf44 Frame_Shift_Ins p.S136Ffs*22 0.34 TCGA-DD-AADD-01 19 17571605 17571605 T G NXNL1 Missense_Mutation p.E25A 0.30 deleterious(0.03) probably_damaging(0.917) TCGA-DD-AADD-01 19 32954294 32954294 G A DPY19L3 Missense_Mutation p.V449M 0.11 tolerated(0.42) benign(0.003) TCGA-DD-AADD-01 19 37865094 37865094 A G ZNF527 5'UTR 0.33 TCGA-DD-AADD-01 19 49134159 49134159 G T DBP Missense_Mutation p.R305S 0.47 deleterious(0) probably_damaging(0.944) TCGA-DD-AADD-01 19 49220043 49220043 G A MAMSTR Intron 0.21 TCGA-DD-AADD-01 19 52568190 52568190 A T ZNF841 3'UTR 0.23 TCGA-DD-AADD-01 19 54579163 54579163 G A TARM1 Silent p.C14C 0.58 TCGA-DD-AADD-01 19 9026242 9026242 A T MUC16 Silent p.R12248R 0.42 TCGA-DD-AADD-01 1 110921555 110921555 A C SLC16A4 Missense_Mutation p.I317S 0.56 deleterious(0) possibly_damaging(0.673) TCGA-DD-AADD-01 1 111986674 111986674 A C WDR77 Splice_Site p.X188_splice 0.52 TCGA-DD-AADD-01 1 120480003 120480003 T C NOTCH2 Missense_Mutation p.T1142A 0.45 deleterious(0.01) benign(0.044) TCGA-DD-AADD-01 1 152484514 152484514 C G LCE5A 3'UTR 0.23 TCGA-DD-AADD-01 1 154474168 154474206 ATCAGACCCTGCAGGCTGTCGCGGGACAGCCGGCTGTCC - SHE In_Frame_Del p.K99_I112delinsN 0.39 TCGA-DD-AADD-01 1 155233082 155233082 T A CLK2 Missense_Mutation p.H475L 0.61 deleterious(0.01) possibly_damaging(0.706) TCGA-DD-AADD-01 1 155583257 155583257 C A MSTO1 Missense_Mutation p.L430I 0.03 tolerated(0.1) benign(0.158) TCGA-DD-AADD-01 1 183515342 183515342 G A SMG7 Nonsense_Mutation p.W825* 0.48 TCGA-DD-AADD-01 1 1847940 1847940 G A CALML6 Missense_Mutation p.E47K 0.33 tolerated(1) possibly_damaging(0.726) TCGA-DD-AADD-01 1 2116583 2116583 G A PRKCZ 3'UTR 0.86 TCGA-DD-AADD-01 1 244735632 244735632 A G C1orf101 Missense_Mutation p.D503G 0.46 deleterious(0) probably_damaging(0.998) TCGA-DD-AADD-01 1 27683225 27683225 G A MAP3K6 Missense_Mutation p.A1127V 0.07 tolerated(0.5) benign(0.003) TCGA-DD-AADD-01 1 41948170 41948170 G T EDN2 Missense_Mutation p.P104H 0.25 tolerated(0.15) possibly_damaging(0.838) TCGA-DD-AADD-01 1 78444594 78444594 T C FUBP1 Missense_Mutation p.K32R 0.54 deleterious(0) possibly_damaging(0.497) TCGA-DD-AADD-01 20 9496958 9496958 A C LAMP5 Missense_Mutation p.Q142P 0.38 deleterious(0.01) probably_damaging(0.945) TCGA-DD-AADD-01 21 40570714 40570714 T C BRWD1 Missense_Mutation p.I1876M 0.16 tolerated_low_confidence(0.08) benign(0.082) TCGA-DD-AADD-01 21 43732358 43732358 G A TFF3 3'UTR 0.68 TCGA-DD-AADD-01 21 47557204 47557205 - A FTCD Frame_Shift_Ins p.N497Qfs*15 0.43 TCGA-DD-AADD-01 22 21982571 21982571 C A YDJC 3'UTR 0.53 TCGA-DD-AADD-01 22 30731656 30731656 G C SF3A1 Silent p.L731L 0.34 TCGA-DD-AADD-01 22 35689064 35689064 C G HMGXB4 Missense_Mutation p.T573S 0.48 deleterious(0.01) probably_damaging(0.99) TCGA-DD-AADD-01 22 38049838 38049838 C T SH3BP1 Missense_Mutation p.P551S 0.43 tolerated(0.59) benign(0.01) TCGA-DD-AADD-01 2 108487699 108487699 G A RGPD4 Missense_Mutation p.R1080K 0.46 deleterious(0.01) probably_damaging(0.996) TCGA-DD-AADD-01 2 137852495 137852495 A G THSD7B Missense_Mutation p.K335E 0.53 deleterious(0.04) possibly_damaging(0.879) TCGA-DD-AADD-01 2 166245957 166245957 G - SCN2A Frame_Shift_Del p.E1881Sfs*20 0.35 TCGA-DD-AADD-01 2 168105583 168105583 C A XIRP2 Missense_Mutation p.Q2561K 0.49 possibly_damaging(0.853) TCGA-DD-AADD-01 2 176944974 176944974 G A EVX2 Missense_Mutation p.A431V 0.20 tolerated_low_confidence(0.09) possibly_damaging(0.483) TCGA-DD-AADD-01 2 219118779 219118779 A G ARPC2 3'UTR 0.43 TCGA-DD-AADD-01 2 27245167 27245167 C T MAPRE3 Silent p.S27S 0.17 TCGA-DD-AADD-01 2 55750945 55750945 C G CCDC104 Missense_Mutation p.T90S 0.31 tolerated(1) benign(0.006) TCGA-DD-AADD-01 3 100059950 100059950 A G NIT2 Missense_Mutation p.Y94C 0.41 deleterious(0) probably_damaging(0.999) TCGA-DD-AADD-01 3 10384604 10384604 T A ATP2B2 Missense_Mutation p.M917L 0.46 deleterious(0.02) benign(0.002) TCGA-DD-AADD-01 3 122133978 122133978 A C WDR5B Missense_Mutation p.F133C 0.47 deleterious(0.03) probably_damaging(0.999) TCGA-DD-AADD-01 3 122133991 122133991 A C WDR5B Missense_Mutation p.F129V 0.44 deleterious(0.01) probably_damaging(0.984) TCGA-DD-AADD-01 3 122447665 122447665 A T PARP14 3'UTR 0.40 TCGA-DD-AADD-01 3 123452969 123452969 C T MYLK Missense_Mutation p.A292T 0.46 tolerated(0.38) benign(0.186) TCGA-DD-AADD-01 3 127784015 127784015 A C SEC61A1 Intron 0.57 TCGA-DD-AADD-01 3 41266101 41266101 C A CTNNB1 Missense_Mutation p.S33Y 0.37 deleterious(0) possibly_damaging(0.64) TCGA-DD-AADD-01 3 47161866 47161866 C T SETD2 Silent p.E1420E 0.20 TCGA-DD-AADD-01 4 101401107 101401107 C T EMCN Missense_Mutation p.V52I 0.49 tolerated(0.24) possibly_damaging(0.739) TCGA-DD-AADD-01 4 126371527 126371527 C T FAT4 Missense_Mutation p.A3119V 0.23 benign(0.403) TCGA-DD-AADD-01 4 2932347 2932347 A C MFSD10 3'UTR 0.56 TCGA-DD-AADD-01 4 48082049 48082049 C A TXK Silent p.L351L 0.05 TCGA-DD-AADD-01 5 140235813 140235813 G A PCDHA10 Silent p.Q60Q 0.86 TCGA-DD-AADD-01 5 149324276 149324276 A G PDE6A 5'UTR 1.00 TCGA-DD-AADD-01 5 158603773 158603774 - CAAGG RNF145 Frame_Shift_Ins p.V193Afs*16 0.61 TCGA-DD-AADD-01 5 271812 271812 C G PDCD6 5'UTR 0.26 TCGA-DD-AADD-01 5 38967502 38967502 C T RICTOR Missense_Mutation p.R363K 0.91 tolerated(0.53) benign(0.165) TCGA-DD-AADD-01 6 102503227 102503227 T G GRIK2 Missense_Mutation p.I778M 0.10 tolerated(0.06) probably_damaging(0.934) TCGA-DD-AADD-01 6 158510898 158510898 C T SYNJ2 Missense_Mutation p.P1162S 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DD-AADD-01 6 27277263 27277263 G C POM121L2 Missense_Mutation p.T896S 0.65 tolerated(0.08) probably_damaging(0.981) TCGA-DD-AADD-01 6 31918947 31918947 A G CFB Missense_Mutation p.I1130V 0.57 tolerated(1) benign(0.003) TCGA-DD-AADD-01 6 37614143 37614143 C T MDGA1 Silent p.Q685Q 0.68 TCGA-DD-AADD-01 6 42797158 42797158 A T GLTSCR1L Missense_Mutation p.I363F 0.16 deleterious(0) probably_damaging(0.977) TCGA-DD-AADD-01 6 51609283 51609283 A G PKHD1 Silent p.Y3352Y 0.15 TCGA-DD-AADD-01 7 20199561 20199561 T G MACC1 Silent p.S141S 0.41 TCGA-DD-AADD-01 7 27194719 27194719 A C HOXA7 Missense_Mutation p.C168G 0.44 deleterious(0.01) benign(0.047) TCGA-DD-AADD-01 7 35293157 35293157 C G TBX20 Silent p.S25S 0.51 TCGA-DD-AADD-01 7 39730078 39730078 G A RALA Missense_Mutation p.G71E 0.42 deleterious(0) probably_damaging(1) TCGA-DD-AADD-01 7 99720107 99720107 G A CNPY4 Silent p.E83E 0.57 TCGA-DD-AADD-01 8 107531242 107531242 A T OXR1 Missense_Mutation p.Q33L 0.45 tolerated_low_confidence(0.46) benign(0.013) TCGA-DD-AADD-01 8 109226891 109226891 C T EIF3E Missense_Mutation p.A336T 0.52 deleterious(0) probably_damaging(1) TCGA-DD-AADD-01 8 117778791 117778791 G A UTP23 5'UTR 0.11 TCGA-DD-AADD-01 8 65495118 65495118 A G BHLHE22 3'UTR 0.39 TCGA-DD-AADD-01 8 67342751 67342751 T G RRS1 3'UTR 0.41 TCGA-DD-AADD-01 8 87519286 87519286 T C RMDN1 Missense_Mutation p.Y62C 0.57 tolerated(0.15) benign(0.007) TCGA-DD-AADD-01 9 114089907 114089907 T C OR2K2 Missense_Mutation p.I269M 0.88 tolerated(0.23) possibly_damaging(0.908) TCGA-DD-AADD-01 9 135960410 135960410 C T CELP RNA 0.83 TCGA-DD-AADD-01 9 2812219 2812219 C T KIAA0020 Splice_Site p.X471_splice 0.84 TCGA-DD-AADD-01 X 128623009 128623009 T C SMARCA1 Missense_Mutation p.M668V 0.86 deleterious(0) benign(0.175) TCGA-DD-AADD-01 X 149814284 149814284 A T MTM1 Missense_Mutation p.K269N 0.95 deleterious(0.01) benign(0.213) TCGA-DD-AADD-01 X 46713108 46713108 G T RP2 Silent p.V100V 0.13 TCGA-DD-AADD-01 X 64738079 64738079 T G LAS1L Missense_Mutation p.K572T 0.89 tolerated(0.13) benign(0.066) TCGA-DD-AADE-01 10 106865229 106865229 G T SORCS3 Missense_Mutation p.D390Y 0.45 deleterious(0) probably_damaging(0.971) TCGA-DD-AADE-01 10 115337800 115337800 G A HABP2 Missense_Mutation p.R155K 0.51 tolerated(0.24) benign(0.02) TCGA-DD-AADE-01 10 115337801 115337801 G T HABP2 Missense_Mutation p.R155S 0.51 tolerated(0.22) benign(0.1) TCGA-DD-AADE-01 10 131671777 131671777 G A EBF3 Silent p.H240H 0.46 TCGA-DD-AADE-01 10 88197724 88197724 T C WAPAL Missense_Mutation p.I1154V 0.31 tolerated(0.15) possibly_damaging(0.604) TCGA-DD-AADE-01 10 97792415 97792415 A - CC2D2B 3'Flank 0.23 TCGA-DD-AADE-01 11 102937078 102937078 T C DCUN1D5 Missense_Mutation p.I159V 0.32 tolerated(0.21) benign(0.084) TCGA-DD-AADE-01 11 1087896 1087896 A G MUC2 Missense_Mutation p.Y1124C 0.20 probably_damaging(0.999) TCGA-DD-AADE-01 11 129745336 129745336 C T NFRKB Silent p.L615L 0.37 TCGA-DD-AADE-01 11 18042407 18042407 T G TPH1 3'UTR 0.55 TCGA-DD-AADE-01 11 55653151 55653151 C T TRIM51 Missense_Mutation p.R83W 0.05 tolerated(0.9) benign(0.005) TCGA-DD-AADE-01 11 62343405 62343405 G A TUT1 Nonsense_Mutation p.Q634* 0.25 TCGA-DD-AADE-01 12 100934530 100934539 GAGATTTTCA - NR1H4 Frame_Shift_Del p.E348Ifs*26 0.25 TCGA-DD-AADE-01 12 10163364 10163364 T C CLEC12B Silent p.S2S 0.45 TCGA-DD-AADE-01 12 104383155 104383155 A G GLT8D2 3'UTR 0.39 TCGA-DD-AADE-01 12 121707370 121707370 G A CAMKK2 Silent p.V178V 0.23 TCGA-DD-AADE-01 12 123265875 123265875 G A CCDC62 Missense_Mutation p.E132K 0.38 deleterious(0.03) possibly_damaging(0.755) TCGA-DD-AADE-01 12 123834937 123834937 T C SBNO1 Missense_Mutation p.I18V 0.37 deleterious_low_confidence(0.01) benign(0.143) TCGA-DD-AADE-01 12 133683150 133683150 T C ZNF140 Silent p.A429A 0.38 TCGA-DD-AADE-01 12 53879856 53879856 C G MAP3K12 Missense_Mutation p.D269H 0.30 deleterious(0) probably_damaging(0.999) TCGA-DD-AADE-01 12 54405052 54405052 A G HOXC8 Missense_Mutation p.K206E 0.33 deleterious(0) probably_damaging(0.992) TCGA-DD-AADE-01 12 57908591 57908591 A G MARS Missense_Mutation p.T686A 0.31 tolerated(0.18) benign(0.012) TCGA-DD-AADE-01 12 72936117 72936117 T C TRHDE Missense_Mutation p.V545A 0.41 tolerated(0.09) benign(0.215) TCGA-DD-AADE-01 12 95456409 95456413 GAGTA - NR2C1 Frame_Shift_Del p.T53Kfs*34 0.30 TCGA-DD-AADE-01 13 113900301 113900301 T C CUL4A Missense_Mutation p.I521T 0.40 deleterious(0.02) possibly_damaging(0.635) TCGA-DD-AADE-01 13 53422358 53422358 A T PCDH8 Missense_Mutation p.S72T 0.42 deleterious(0.01) benign(0.228) TCGA-DD-AADE-01 14 103188603 103188603 T G RCOR1 Missense_Mutation p.F423L 0.30 deleterious(0.01) probably_damaging(0.986) TCGA-DD-AADE-01 14 65406390 65406390 G A GPX2 Missense_Mutation p.P130L 0.37 deleterious(0.03) benign(0.118) TCGA-DD-AADE-01 14 65418368 65418368 G T RAB15 Missense_Mutation p.Q67K 0.36 deleterious(0) probably_damaging(0.915) TCGA-DD-AADE-01 14 65544620 65544620 C A MAX Intron 0.28 TCGA-DD-AADE-01 14 96968802 96968802 G T PAPOLA 5'UTR 0.43 TCGA-DD-AADE-01 14 99865113 99865113 G C SETD3 Missense_Mutation p.T563S 0.31 tolerated_low_confidence(0.3) benign(0.292) TCGA-DD-AADE-01 15 24925259 24925259 T C NPAP1 3'UTR 0.28 TCGA-DD-AADE-01 15 24927327 24927327 G T NPAP1 3'UTR 0.41 TCGA-DD-AADE-01 15 28326852 28326852 C T OCA2 Missense_Mutation p.G57R 0.05 tolerated_low_confidence(0.29) benign(0.166) TCGA-DD-AADE-01 15 49284718 49284719 TC - SECISBP2L Frame_Shift_Del p.E1010Sfs*5 0.24 TCGA-DD-AADE-01 15 75980591 75980591 G T CSPG4 Silent p.R939R 0.32 TCGA-DD-AADE-01 15 77154760 77154760 C A SCAPER Missense_Mutation p.D41Y 0.29 deleterious(0) benign(0.097) TCGA-DD-AADE-01 15 90344728 90344728 G C ANPEP Silent p.T560T 0.30 TCGA-DD-AADE-01 15 99672268 99672269 - T SYNM Frame_Shift_Ins p.Q1236Sfs*12 0.23 TCGA-DD-AADE-01 16 129606 129606 C G MPG Missense_Mutation p.I74M 0.27 deleterious(0.05) possibly_damaging(0.535) TCGA-DD-AADE-01 16 28495439 28495439 G A CLN3 Silent p.S226S 0.30 TCGA-DD-AADE-01 16 29679149 29679149 T C SPN 3'UTR 0.47 TCGA-DD-AADE-01 16 68335257 68335257 T A SLC7A6OS Missense_Mutation p.Q284L 0.26 tolerated(0.15) benign(0.004) TCGA-DD-AADE-01 16 88721205 88721205 G A MVD Missense_Mutation p.T303I 0.33 deleterious(0) probably_damaging(0.975) TCGA-DD-AADE-01 17 11461430 11461430 C T SHISA6 Missense_Mutation p.R489C 0.10 deleterious(0) probably_damaging(0.995) TCGA-DD-AADE-01 17 36476595 36476595 A T MRPL45 Missense_Mutation p.M202L 0.23 tolerated(0.69) benign(0.009) TCGA-DD-AADE-01 17 43213538 43213538 G T ACBD4 Missense_Mutation p.E9D 0.18 deleterious(0.02) possibly_damaging(0.835) TCGA-DD-AADE-01 17 48667952 48667952 A T CACNA1G Missense_Mutation p.N808Y 0.55 deleterious(0) probably_damaging(1) TCGA-DD-AADE-01 17 59989028 59989028 A G INTS2 Silent p.L277L 0.51 TCGA-DD-AADE-01 17 62034767 62034767 C T SCN4A Missense_Mutation p.V711M 0.26 deleterious(0) probably_damaging(1) TCGA-DD-AADE-01 17 7137429 7137429 C A DVL2 Silent p.A51A 0.57 TCGA-DD-AADE-01 17 7348430 7348430 G T CHRNB1 5'UTR 0.17 TCGA-DD-AADE-01 17 78247203 78247203 A C RNF213 Missense_Mutation p.E87D 0.29 benign(0.01) TCGA-DD-AADE-01 17 78247205 78247205 T A RNF213 Splice_Site p.X87_splice 0.30 TCGA-DD-AADE-01 18 33795576 33795576 T C MOCOS Missense_Mutation p.V478A 0.48 tolerated(1) benign(0.001) TCGA-DD-AADE-01 18 33840138 33840138 G A MOCOS Silent p.Q803Q 0.38 TCGA-DD-AADE-01 18 59815546 59815546 T C PIGN Missense_Mutation p.N192S 0.30 tolerated(0.07) possibly_damaging(0.773) TCGA-DD-AADE-01 19 11286587 11286587 C T KANK2 Silent p.E621E 0.40 TCGA-DD-AADE-01 19 11560181 11560181 A C PRKCSH Missense_Mutation p.E514A 0.26 tolerated(0.07) possibly_damaging(0.559) TCGA-DD-AADE-01 19 16236349 16236350 - T RAB8A Frame_Shift_Ins p.E107* 0.21 TCGA-DD-AADE-01 19 19753423 19753423 G A GMIP Missense_Mutation p.P9S 0.36 tolerated_low_confidence(0.22) benign(0.049) TCGA-DD-AADE-01 19 21512155 21512155 G C ZNF708 5'UTR 0.55 TCGA-DD-AADE-01 19 36159573 36159574 - G UPK1A Intron 0.20 TCGA-DD-AADE-01 19 40478064 40478064 A T PSMC4 Silent p.P16P 0.29 TCGA-DD-AADE-01 19 45026913 45026913 C T CEACAM20 RNA 0.31 TCGA-DD-AADE-01 19 45567295 45567300 TCCCGC - CLASRP In_Frame_Del p.R316_S317del 0.16 TCGA-DD-AADE-01 19 49973731 49973731 A G ALDH16A1 3'UTR 0.31 TCGA-DD-AADE-01 19 50885832 50885832 G C NR1H2 Silent p.L452L 0.35 TCGA-DD-AADE-01 19 56379080 56379080 T C NLRP4 Missense_Mutation p.V731A 0.33 tolerated(1) benign(0.004) TCGA-DD-AADE-01 19 57967008 57967008 A C VN1R1 Missense_Mutation p.F283V 0.38 tolerated(1) benign(0.012) TCGA-DD-AADE-01 1 101190289 101190289 C A VCAM1 Missense_Mutation p.F257L 0.38 tolerated(0.56) benign(0.009) TCGA-DD-AADE-01 1 104114144 104159980 1:104114144-104159980 - AMY2B large deletion 0.19 TCGA-DD-AADE-01 1 1274773 1274775 CGT - DVL1 In_Frame_Del p.T367del 0.31 TCGA-DD-AADE-01 1 13839553 13839553 C A LRRC38 Missense_Mutation p.R179L 0.24 tolerated(0.1) probably_damaging(0.996) TCGA-DD-AADE-01 1 152280880 152280880 G C FLG Missense_Mutation p.S2161C 0.29 possibly_damaging(0.7) TCGA-DD-AADE-01 1 152326575 152326575 T A FLG2 Silent p.G1229G 0.38 TCGA-DD-AADE-01 1 156849081 156849081 T C NTRK1 Missense_Mutation p.V658A 0.30 deleterious(0.02) possibly_damaging(0.782) TCGA-DD-AADE-01 1 1575792 1575792 C A CDK11B Missense_Mutation p.R369L 0.14 unknown(0) TCGA-DD-AADE-01 1 186648486 186648486 C T PTGS2 Missense_Mutation p.R46Q 0.33 tolerated(0.06) possibly_damaging(0.546) TCGA-DD-AADE-01 1 206225278 206225304 GTGAAGATGACCTTTGTCATCGTGCTG - AVPR1B In_Frame_Del p.V280_L288del 0.14 TCGA-DD-AADE-01 1 215768724 215768724 G C KCTD3 Missense_Mutation p.D282H 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-DD-AADE-01 1 227381544 227381544 T C CDC42BPA Missense_Mutation p.Y181C 0.29 deleterious(0) probably_damaging(0.999) TCGA-DD-AADE-01 1 233518139 233518139 C T MLK4 Silent p.V931V 0.28 TCGA-DD-AADE-01 1 27238458 27238458 G C NR0B2 Missense_Mutation p.L218V 0.33 tolerated(0.11) probably_damaging(0.998) TCGA-DD-AADE-01 1 43629870 43629870 T C EBNA1BP2 3'UTR 0.50 TCGA-DD-AADE-01 1 84335493 84335493 T A TTLL7 3'UTR 0.23 TCGA-DD-AADE-01 20 3128547 3128547 A T FASTKD5 Silent p.V390V 0.29 TCGA-DD-AADE-01 20 3299040 3299040 A G C20orf194 Missense_Mutation p.M455T 0.33 deleterious(0) probably_damaging(0.996) TCGA-DD-AADE-01 20 40790013 40790013 G T PTPRT Nonsense_Mutation p.Y887* 0.29 TCGA-DD-AADE-01 20 44515576 44515576 T G SPATA25 Silent p.R88R 0.35 TCGA-DD-AADE-01 20 44642394 44642394 T C MMP9 Missense_Mutation p.V570A 0.34 tolerated(1) benign(0.001) TCGA-DD-AADE-01 20 49366919 49366919 A G PARD6B Missense_Mutation p.N338S 0.31 tolerated_low_confidence(1) benign(0) TCGA-DD-AADE-01 20 57475058 57475058 A G GNAS Intron 0.40 TCGA-DD-AADE-01 20 58606344 58606344 C A CDH26 Missense_Mutation p.A336D 0.34 deleterious_low_confidence(0) possibly_damaging(0.826) TCGA-DD-AADE-01 21 43805592 43805592 C T TMPRSS3 Silent p.R166R 0.33 TCGA-DD-AADE-01 22 19748651 19748651 C A TBX1 Silent p.P86P 0.37 TCGA-DD-AADE-01 22 50729025 50729025 C T PLXNB2 Intron 0.35 TCGA-DD-AADE-01 2 103300708 103300708 G T SLC9A2 Silent p.V446V 0.35 TCGA-DD-AADE-01 2 120836088 120836088 A T EPB41L5 Missense_Mutation p.Y245F 0.31 deleterious(0) probably_damaging(1) TCGA-DD-AADE-01 2 128462270 128462270 T C WDR33 3'UTR 0.23 TCGA-DD-AADE-01 2 158178164 158178164 T C ERMN Silent p.E171E 0.30 TCGA-DD-AADE-01 2 20192754 20192754 T G MATN3 3'UTR 0.64 TCGA-DD-AADE-01 2 225679061 225679061 A G DOCK10 Missense_Mutation p.S1129P 0.32 tolerated(0.06) benign(0.003) TCGA-DD-AADE-01 2 228552226 228552226 T C SLC19A3 Missense_Mutation p.I460V 0.32 tolerated(0.3) benign(0.012) TCGA-DD-AADE-01 2 232390063 232390063 T C NMUR1 Silent p.S324S 0.34 TCGA-DD-AADE-01 2 37283648 37283648 G A HEATR5B Silent p.V778V 0.30 TCGA-DD-AADE-01 2 55826140 55826140 C T SMEK2 Silent p.Q111Q 0.24 TCGA-DD-AADE-01 2 68882356 68882356 G T PROKR1 Missense_Mutation p.R277L 0.33 deleterious(0.01) possibly_damaging(0.565) TCGA-DD-AADE-01 2 86297179 86297179 C T POLR1A Missense_Mutation p.V610I 0.36 tolerated(0.27) benign(0.013) TCGA-DD-AADE-01 2 90044203 90044203 T A IGKV2D-24 Missense_Mutation p.S42T 0.39 tolerated(0.08) benign(0.137) TCGA-DD-AADE-01 2 99767090 99767090 T C C2ORF15 Silent p.D57D 0.34 TCGA-DD-AADE-01 3 132400798 132400798 T - NPHP3 Frame_Shift_Del p.T1317Qfs*19 0.17 TCGA-DD-AADE-01 3 15466502 15466502 T C METTL6 Missense_Mutation p.Y107C 0.31 deleterious(0) probably_damaging(0.986) TCGA-DD-AADE-01 3 183959370 183959370 G A VWA5B2 Silent p.S1091S 0.39 TCGA-DD-AADE-01 3 196921381 196921381 T G DLG1 Missense_Mutation p.E133A 0.39 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-DD-AADE-01 3 41266100 41266100 T C CTNNB1 Missense_Mutation p.S33P 0.30 deleterious(0.01) benign(0.423) TCGA-DD-AADE-01 3 41266137 41266137 C A CTNNB1 Missense_Mutation p.S45Y 0.39 deleterious(0) probably_damaging(0.968) TCGA-DD-AADE-01 3 4358293 4358293 T G SETMAR Missense_Mutation p.F473C 0.36 tolerated_low_confidence(0.06) unknown(0) TCGA-DD-AADE-01 3 4358307 4358307 T G SETMAR Missense_Mutation p.S478A 0.40 tolerated_low_confidence(0.21) unknown(0) TCGA-DD-AADE-01 3 47887745 47887745 G A DHX30 Missense_Mutation p.D395N 0.36 tolerated(0.08) probably_damaging(0.939) TCGA-DD-AADE-01 3 66313770 66313770 G A SLC25A26 Silent p.L140L 0.39 TCGA-DD-AADE-01 3 68588000 68588000 G T FAM19A1 Missense_Mutation p.C118F 0.35 deleterious(0) probably_damaging(0.995) TCGA-DD-AADE-01 3 98073346 98073350 TCTTA - OR5K4 Frame_Shift_Del p.Y218Lfs*17 0.30 TCGA-DD-AADE-01 4 158091870 158091870 T C GLRB Missense_Mutation p.I495T 0.30 tolerated(0.27) benign(0.001) TCGA-DD-AADE-01 4 1952825 1952825 C T WHSC1 Silent p.P636P 0.22 TCGA-DD-AADE-01 4 46264068 46264068 C T GABRA2 Missense_Mutation p.A312T 0.36 deleterious(0) probably_damaging(0.973) TCGA-DD-AADE-01 4 5812081 5812081 C T EVC Missense_Mutation p.T933I 0.34 deleterious(0.03) possibly_damaging(0.59) TCGA-DD-AADE-01 4 68938054 68938054 T C TMPRSS11F Silent p.S167S 0.38 TCGA-DD-AADE-01 5 131014861 131014861 T C FNIP1 Missense_Mutation p.I404V 0.04 tolerated(0.15) benign(0.019) TCGA-DD-AADE-01 5 134870747 134870747 G A NEUROG1 Missense_Mutation p.P212S 0.08 tolerated(0.11) benign(0.03) TCGA-DD-AADE-01 5 145610481 145610481 G A RBM27 Splice_Site p.X284_splice 0.32 TCGA-DD-AADE-01 5 160049550 160049550 G A ATP10B Nonsense_Mutation p.R555* 0.40 TCGA-DD-AADE-01 5 1816119 1816119 G C NDUFS6 3'UTR 0.32 TCGA-DD-AADE-01 5 55259984 55259986 AGG - IL6ST In_Frame_Del p.P216del 0.26 TCGA-DD-AADE-01 5 68715559 68715559 C A MARVELD2 Nonsense_Mutation p.S116* 0.40 TCGA-DD-AADE-01 6 146256475 146256475 T C SHPRH Missense_Mutation p.H891R 0.33 deleterious(0.05) benign(0.116) TCGA-DD-AADE-01 6 154414485 154414485 T A OPRM1 Intron 0.39 TCGA-DD-AADE-01 6 31918993 31918993 A C CFB Missense_Mutation p.K1145T 0.31 deleterious(0.01) probably_damaging(0.981) TCGA-DD-AADE-01 6 31919010 31919010 A T CFB Missense_Mutation p.N1151Y 0.32 tolerated(0.22) probably_damaging(0.999) TCGA-DD-AADE-01 6 32038115 32038115 T C TNXB Silent p.S1689S 0.32 TCGA-DD-AADE-01 6 33154482 33154482 C T COL11A2 Silent p.Q240Q 0.29 TCGA-DD-AADE-01 6 39832239 39832239 A G DAAM2 Missense_Mutation p.S97G 0.29 deleterious(0.01) probably_damaging(0.989) TCGA-DD-AADE-01 6 44216462 44216462 C A HSP90AB1 Missense_Mutation p.F32L 0.20 deleterious(0.05) benign(0.136) TCGA-DD-AADE-01 6 90411385 90411385 T - MDN1 Frame_Shift_Del p.V2774Ffs*22 0.28 TCGA-DD-AADE-01 7 130140357 130140357 T G MEST Missense_Mutation p.F211V 0.40 tolerated(0.48) benign(0.035) TCGA-DD-AADE-01 7 139097314 139097314 A T LUC7L2 Missense_Mutation p.K332M 0.05 deleterious(0.01) probably_damaging(0.984) TCGA-DD-AADE-01 7 141764321 141764321 G T MGAM Nonsense_Mutation p.E1495* 0.05 TCGA-DD-AADE-01 7 150029593 150029593 T G ZBED6CL 3'UTR 0.36 TCGA-DD-AADE-01 7 24738645 24738645 T A DFNA5 Nonstop_Mutation p.*497Cext*4 0.40 TCGA-DD-AADE-01 7 40234573 40234573 A G SUGCT Missense_Mutation p.Y140C 0.33 deleterious(0) probably_damaging(0.99) TCGA-DD-AADE-01 7 53103849 53103849 G A POM121L12 Missense_Mutation p.G162D 0.37 tolerated(0.11) benign(0.008) TCGA-DD-AADE-01 7 54612440 54612440 C G VSTM2A Missense_Mutation p.P69A 0.26 tolerated(0.27) benign(0.036) TCGA-DD-AADE-01 7 65553861 65553861 C G ASL Silent p.L262L 0.39 TCGA-DD-AADE-01 7 8790823 8790823 A G NXPH1 Silent p.E80E 0.07 TCGA-DD-AADE-01 7 90546967 90546967 A G CDK14 Missense_Mutation p.I234V 0.31 tolerated(0.52) benign(0.245) TCGA-DD-AADE-01 8 125103743 125103743 G T FER1L6 Nonsense_Mutation p.G1491* 0.13 TCGA-DD-AADE-01 8 67505381 67505381 C A MYBL1 Missense_Mutation p.V246F 0.15 deleterious(0.04) benign(0.367) TCGA-DD-AADE-01 9 123921275 123921275 C T CNTRL Missense_Mutation p.T1636I 0.29 benign(0.002) TCGA-DD-AADE-01 9 140056943 140056943 C A GRIN1 Silent p.V634V 0.46 TCGA-DD-AADE-01 X 115590099 115590099 G A SLC6A14 Missense_Mutation p.S636N 0.69 tolerated(0.47) benign(0.003) TCGA-DD-AADE-01 X 117959625 117959625 G T ZCCHC12 Missense_Mutation p.A140S 0.09 tolerated(0.16) benign(0.409) TCGA-DD-AADE-01 X 117959626 117959626 C T ZCCHC12 Missense_Mutation p.A140V 0.09 tolerated(0.1) benign(0.297) TCGA-DD-AADE-01 X 130930006 130930006 G A RP11-453F18__B.1 RNA 0.90 TCGA-DD-AADE-01 X 139586656 139586656 G T SOX3 Missense_Mutation p.D190E 0.70 deleterious(0) probably_damaging(0.996) TCGA-DD-AADE-01 X 301663 301663 C A PPP2R3B Missense_Mutation p.W396C 0.40 deleterious(0) probably_damaging(0.989) TCGA-DD-AADE-01 X 35821445 35821445 A T MAGEB16 3'UTR 0.73 TCGA-DD-AADE-01 X 41075386 41075386 G T USP9X Nonsense_Mutation p.E1856* 0.75 TCGA-DD-AADE-01 X 47486303 47486303 G C CFP Missense_Mutation p.P270R 0.59 tolerated(0.1) possibly_damaging(0.856) TCGA-DD-AADF-01 10 13040480 13040480 C A CCDC3 Missense_Mutation p.G136V 0.24 deleterious(0) probably_damaging(0.998) TCGA-DD-AADF-01 10 134693042 134693042 A T TTC40 Missense_Mutation p.L1298Q 0.55 deleterious(0) probably_damaging(0.995) TCGA-DD-AADF-01 10 135020434 135020434 A T KNDC1 Missense_Mutation p.S1186C 0.52 deleterious(0.01) possibly_damaging(0.571) TCGA-DD-AADF-01 10 15863696 15863696 C G FAM188A Missense_Mutation p.V254L 0.56 deleterious(0.01) benign(0.211) TCGA-DD-AADF-01 10 43883327 43883327 C A HNRNPF Missense_Mutation p.M2I 0.57 tolerated(0.11) benign(0.223) TCGA-DD-AADF-01 10 55568461 55568461 T A PCDH15 Silent p.T717T 0.65 TCGA-DD-AADF-01 10 79553847 79553847 C T DLG5 Missense_Mutation p.D1859N 0.67 deleterious(0) probably_damaging(0.997) TCGA-DD-AADF-01 10 85933619 85933619 A T C10orf99 Silent p.L4L 0.23 TCGA-DD-AADF-01 11 101375006 101375006 A - TRPC6 Frame_Shift_Del p.Y232Mfs*64 0.16 TCGA-DD-AADF-01 11 103339360 103339360 A T DYNC2H1 Missense_Mutation p.Q4238L 0.63 benign(0) TCGA-DD-AADF-01 11 10585615 10585615 A T LYVE1 Missense_Mutation p.V90D 0.36 deleterious(0) possibly_damaging(0.866) TCGA-DD-AADF-01 11 121475846 121475846 A T SORL1 Missense_Mutation p.Q1559L 0.67 tolerated_low_confidence(0.07) probably_damaging(0.988) TCGA-DD-AADF-01 11 123676807 123676807 A T OR6M1 Missense_Mutation p.L84Q 0.51 deleterious(0.03) benign(0.315) TCGA-DD-AADF-01 11 16816171 16816171 G T PLEKHA7 Missense_Mutation p.T870N 0.21 tolerated(0.28) benign(0.003) TCGA-DD-AADF-01 11 17464328 17464328 C T ABCC8 Silent p.E523E 0.23 TCGA-DD-AADF-01 11 4936771 4936771 C A OR51G2 Silent p.L41L 0.62 TCGA-DD-AADF-01 11 4976935 4976935 A T OR51A2 Silent p.I3I 0.25 TCGA-DD-AADF-01 11 56184984 56184984 C G OR5R1 Missense_Mutation p.G242A 0.23 tolerated(0.55) possibly_damaging(0.739) TCGA-DD-AADF-01 11 59837840 59837840 A T MS4A3 3'UTR 0.31 TCGA-DD-AADF-01 11 60102366 60102366 A G MS4A6E 5'UTR 0.28 TCGA-DD-AADF-01 11 60703650 60703650 T A TMEM132A Silent p.A782A 0.53 TCGA-DD-AADF-01 11 62591640 62591640 C T STX5 Silent p.Q302Q 0.37 TCGA-DD-AADF-01 11 63283717 63283717 A T LGALS12 Splice_Site p.X290_splice 0.30 TCGA-DD-AADF-01 11 6866988 6866988 G C OR10A5 Missense_Mutation p.Q25H 0.06 deleterious(0.02) possibly_damaging(0.841) TCGA-DD-AADF-01 12 10282710 10282710 G T CLEC7A 5'UTR 0.23 TCGA-DD-AADF-01 12 104359694 104359694 T G TDG 5'UTR 0.16 TCGA-DD-AADF-01 12 109017504 109017504 T A SELPLG Missense_Mutation p.T210S 0.27 tolerated(0.18) unknown(0) TCGA-DD-AADF-01 12 123200023 123200023 A C HCAR3 3'UTR 0.40 TCGA-DD-AADF-01 12 125435079 125435079 C T DHX37 Missense_Mutation p.V1001I 0.33 tolerated(0.09) benign(0.021) TCGA-DD-AADF-01 12 1553897 1553897 A T ERC1 Missense_Mutation p.Q1065L 0.44 deleterious_low_confidence(0.02) benign(0.047) TCGA-DD-AADF-01 12 46582714 46582714 T A SLC38A1 3'UTR 0.58 TCGA-DD-AADF-01 12 49416526 49416526 C A KMT2D Missense_Mutation p.W5395C 0.45 unknown(0) TCGA-DD-AADF-01 12 52309133 52309133 T A ACVRL1 Silent p.A299A 0.48 TCGA-DD-AADF-01 12 53069093 53069093 C G KRT1 Missense_Mutation p.G607R 0.34 deleterious_low_confidence(0) unknown(0) TCGA-DD-AADF-01 12 55795077 55795077 T A OR6C65 Missense_Mutation p.F255L 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DD-AADF-01 12 55795097 55795097 C - OR6C65 Frame_Shift_Del p.A262Efs*7 0.21 TCGA-DD-AADF-01 12 55795161 55795161 G T OR6C65 Missense_Mutation p.L283F 0.40 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-DD-AADF-01 12 65153197 65153197 T A GNS 5'UTR 0.38 TCGA-DD-AADF-01 12 663010 663010 C T B4GALNT3 Missense_Mutation p.R641W 0.21 deleterious(0.01) possibly_damaging(0.586) TCGA-DD-AADF-01 12 663011 663011 G T B4GALNT3 Missense_Mutation p.R641L 0.20 deleterious(0.03) benign(0.081) TCGA-DD-AADF-01 12 7064872 7064872 A T PTPN6 Missense_Mutation p.Q266L 0.42 tolerated(0.16) benign(0.015) TCGA-DD-AADF-01 12 75902132 75902132 G A KRR1 Silent p.F60F 0.49 TCGA-DD-AADF-01 12 93968804 93968804 A T SOCS2 Missense_Mutation p.H149L 0.63 tolerated(0.09) benign(0.38) TCGA-DD-AADF-01 12 96104336 96104336 T C NTN4 Missense_Mutation p.S355G 0.21 deleterious(0) possibly_damaging(0.482) TCGA-DD-AADF-01 13 21620238 21620238 C G LATS2 5'UTR 0.05 TCGA-DD-AADF-01 13 23909572 23909572 G T SACS Missense_Mutation p.L2815I 0.15 probably_damaging(0.992) TCGA-DD-AADF-01 13 37621713 37621713 C A SUPT20H Missense_Mutation p.D42Y 0.65 deleterious(0) probably_damaging(0.992) TCGA-DD-AADF-01 13 60544097 60544097 T A DIAPH3 Silent p.T685T 0.79 TCGA-DD-AADF-01 13 70275509 70275509 A G KLHL1 3'UTR 0.93 TCGA-DD-AADF-01 14 105609336 105609336 A G JAG2 Missense_Mutation p.I1138T 0.89 tolerated(0.06) probably_damaging(0.989) TCGA-DD-AADF-01 14 106067929 106067929 C T IGHE Missense_Mutation p.G46D 0.08 tolerated(0.36) benign(0.287) TCGA-DD-AADF-01 14 21360026 21360026 C T RNASE3 Nonsense_Mutation p.R61* 0.30 TCGA-DD-AADF-01 14 50558262 50558262 C T C14orf183 Silent p.G102G 0.84 TCGA-DD-AADF-01 14 51224347 51224347 T A NIN Missense_Mutation p.Q1134L 0.83 tolerated(0.13) benign(0.075) TCGA-DD-AADF-01 14 56113703 56113703 G A KTN1 Missense_Mutation p.V729I 0.78 tolerated(0.34) benign(0.003) TCGA-DD-AADF-01 14 57741303 57741303 A C AP5M1 Missense_Mutation p.Q139P 0.75 deleterious(0.04) benign(0.177) TCGA-DD-AADF-01 14 68219127 68219127 T A ZFYVE26 Silent p.A2435A 0.60 TCGA-DD-AADF-01 15 42442915 42442915 A T PLA2G4F Missense_Mutation p.L221Q 0.24 deleterious(0.02) benign(0.238) TCGA-DD-AADF-01 15 54305537 54305537 A T UNC13C Missense_Mutation p.H146L 0.29 tolerated_low_confidence(0.24) benign(0.001) TCGA-DD-AADF-01 15 78640425 78640425 A T CRABP1 3'UTR 0.56 TCGA-DD-AADF-01 15 79066995 79066995 A T ADAMTS7 Missense_Mutation p.L616Q 0.50 tolerated(0.06) possibly_damaging(0.677) TCGA-DD-AADF-01 15 93588391 93588391 G A RGMA Missense_Mutation p.A405V 0.46 deleterious(0) probably_damaging(0.999) TCGA-DD-AADF-01 15 94945910 94945910 A T MCTP2 Intron 0.41 TCGA-DD-AADF-01 15 99672017 99672017 A T SYNM Missense_Mutation p.E1150V 0.44 deleterious(0) probably_damaging(0.996) TCGA-DD-AADF-01 16 30018203 30018203 A T DOC2A Missense_Mutation p.Y261N 0.57 deleterious(0) probably_damaging(0.995) TCGA-DD-AADF-01 16 31429500 31429500 T A ITGAD Missense_Mutation p.H868Q 0.27 tolerated(0.26) benign(0.005) TCGA-DD-AADF-01 16 67262306 67262306 T A TMEM208 Missense_Mutation p.F51I 0.29 tolerated(0.72) benign(0.026) TCGA-DD-AADF-01 16 75564437 75564437 A T CHST5 5'UTR 0.39 TCGA-DD-AADF-01 16 75564757 75564757 G A CHST5 5'UTR 0.55 TCGA-DD-AADF-01 16 75642206 75642206 G A ADAT1 Missense_Mutation p.A402V 0.24 deleterious(0.01) probably_damaging(1) TCGA-DD-AADF-01 16 823297 823297 G T MSLNL Silent p.G657G 0.29 TCGA-DD-AADF-01 17 10348322 10348322 T G MYH4 Missense_Mutation p.K1813Q 0.76 deleterious(0.02) probably_damaging(1) TCGA-DD-AADF-01 17 12569544 12569544 G T MYOCD Missense_Mutation p.R13S 0.84 deleterious(0.01) benign(0.085) TCGA-DD-AADF-01 17 34235812 34235812 G A AC015849.16 RNA 0.25 TCGA-DD-AADF-01 17 38348509 38348509 C T RAPGEFL1 Silent p.N344N 0.11 TCGA-DD-AADF-01 17 39022937 39022937 T A KRT12 Missense_Mutation p.T168S 0.47 tolerated(1) benign(0.052) TCGA-DD-AADF-01 17 39775698 39775698 T A KRT17 3'UTR 0.63 TCGA-DD-AADF-01 17 40330402 40330402 T A KCNH4 Missense_Mutation p.Q135L 0.41 deleterious(0.02) benign(0.094) TCGA-DD-AADF-01 17 4619957 4619957 T G ARRB2 Silent p.S137S 0.50 TCGA-DD-AADF-01 17 48193205 48193205 G T SAMD14 Silent p.S217S 0.06 TCGA-DD-AADF-01 17 57215132 57215132 C A SKA2 Intron 0.82 TCGA-DD-AADF-01 17 73871178 73871178 C T TRIM47 Missense_Mutation p.D435N 0.08 tolerated(0.3) probably_damaging(0.998) TCGA-DD-AADF-01 17 74288478 74288478 T C QRICH2 Missense_Mutation p.D611G 0.08 tolerated(0.76) benign(0.005) TCGA-DD-AADF-01 17 7643760 7643760 C A DNAH2 Missense_Mutation p.L467M 0.82 probably_damaging(0.986) TCGA-DD-AADF-01 17 7983423 7983423 A C AC129492.6 Missense_Mutation p.K35T 0.56 benign(0) TCGA-DD-AADF-01 17 79991460 79991460 A T RAC3 Missense_Mutation p.M145L 0.04 tolerated_low_confidence(1) benign(0.011) TCGA-DD-AADF-01 18 12310993 12310993 T A TUBB6 Missense_Mutation p.M73K 0.45 deleterious_low_confidence(0.01) benign(0.197) TCGA-DD-AADF-01 18 21474874 21474874 G A LAMA3 Missense_Mutation p.C1822Y 0.26 probably_damaging(0.999) TCGA-DD-AADF-01 18 34752988 34752988 A C KIAA1328 Silent p.G489G 0.10 TCGA-DD-AADF-01 18 44140460 44140460 T A LOXHD1 5'Flank 0.31 TCGA-DD-AADF-01 18 60642658 60642658 G A PHLPP1 Missense_Mutation p.G1262S 0.29 deleterious(0) probably_damaging(1) TCGA-DD-AADF-01 18 61256029 61256029 T A SERPINB13 Missense_Mutation p.L43Q 0.57 deleterious(0) possibly_damaging(0.73) TCGA-DD-AADF-01 18 63430007 63430007 G A CDH7 5'UTR 0.21 TCGA-DD-AADF-01 18 67671402 67671402 G T RTTN Silent p.L2222L 0.18 TCGA-DD-AADF-01 19 10800046 10800046 T C ILF3 3'UTR 0.11 TCGA-DD-AADF-01 19 1233486 1233486 A G C19orf26 Silent p.Y306Y 0.41 TCGA-DD-AADF-01 19 12881835 12881835 C T HOOK2 Silent p.R271R 0.29 TCGA-DD-AADF-01 19 13936403 13936403 A C ZSWIM4 Missense_Mutation p.Q635P 0.24 deleterious(0.02) unknown(0) TCGA-DD-AADF-01 19 13936406 13936406 A C ZSWIM4 Missense_Mutation p.Q636P 0.26 deleterious(0.02) unknown(0) TCGA-DD-AADF-01 19 13988410 13988410 C A NANOS3 Silent p.G116G 0.37 TCGA-DD-AADF-01 19 36643418 36643418 A T COX7A1 5'UTR 0.43 TCGA-DD-AADF-01 19 37733636 37733636 A T ZNF383 Missense_Mutation p.E166D 0.41 tolerated(0.33) benign(0.042) TCGA-DD-AADF-01 19 38857882 38857882 C G CATSPERG Silent p.R900R 0.32 TCGA-DD-AADF-01 19 40398324 40398324 T A FCGBP Missense_Mutation p.N2215Y 0.38 possibly_damaging(0.904) TCGA-DD-AADF-01 19 45783856 45783856 A T MARK4 Silent p.P380P 0.35 TCGA-DD-AADF-01 19 48032254 48032254 T A ZNF541 Nonsense_Mutation p.K1194* 0.68 TCGA-DD-AADF-01 19 48480713 48480713 T A BSPH1 Missense_Mutation p.D58V 0.57 deleterious(0) possibly_damaging(0.908) TCGA-DD-AADF-01 19 52877651 52877651 G T ZNF880 Missense_Mutation p.G80V 0.04 tolerated(0.14) benign(0.391) TCGA-DD-AADF-01 19 53472521 53472521 A G ZNF702P RNA 0.64 TCGA-DD-AADF-01 19 55495067 55495067 T A NLRP2 Silent p.T667T 0.48 TCGA-DD-AADF-01 19 9087179 9087179 T A MUC16 Missense_Mutation p.S1546C 0.51 unknown(0) TCGA-DD-AADF-01 1 103444281 103444281 C A COL11A1 Missense_Mutation p.G913C 0.55 unknown(0) TCGA-DD-AADF-01 1 110251184 110251184 C T GSTM5 5'Flank 0.15 TCGA-DD-AADF-01 1 110774955 110774955 G A KCNC4 3'UTR 0.18 TCGA-DD-AADF-01 1 151378800 151378800 A G POGZ Missense_Mutation p.L904S 0.15 tolerated(0.54) benign(0.008) TCGA-DD-AADF-01 1 153234128 153234128 A T LOR Missense_Mutation p.S235C 0.35 unknown(0) TCGA-DD-AADF-01 1 155176111 155176111 T A THBS3 Missense_Mutation p.I56F 0.27 deleterious(0.01) benign(0.14) TCGA-DD-AADF-01 1 160000962 160000962 T C PIGM Missense_Mutation p.I190V 0.26 deleterious(0.02) benign(0.107) TCGA-DD-AADF-01 1 160303437 160303437 A G COPA Silent p.D114D 0.13 TCGA-DD-AADF-01 1 16390079 16390092 GGGGTCCGCACCCT - FAM131C Frame_Shift_Del p.Q21Lfs*107 0.37 TCGA-DD-AADF-01 1 16461026 16461026 C T EPHA2 Missense_Mutation p.G540D 0.34 deleterious(0.04) possibly_damaging(0.585) TCGA-DD-AADF-01 1 16533490 16533490 T A ARHGEF19 Missense_Mutation p.S364C 0.44 deleterious(0.01) probably_damaging(0.94) TCGA-DD-AADF-01 1 16892199 16892199 G T NBPF1 Missense_Mutation p.S998Y 0.09 deleterious(0.03) possibly_damaging(0.632) TCGA-DD-AADF-01 1 179100575 179100575 C A ABL2 Missense_Mutation p.A88S 0.61 tolerated(0.08) benign(0.123) TCGA-DD-AADF-01 1 185173859 185173859 A T SWT1 Missense_Mutation p.K566M 0.27 deleterious(0.01) possibly_damaging(0.711) TCGA-DD-AADF-01 1 185985342 185985342 A T HMCN1 Missense_Mutation p.K1721M 0.25 probably_damaging(0.992) TCGA-DD-AADF-01 1 186014950 186014950 G A HMCN1 Silent p.L2145L 0.13 TCGA-DD-AADF-01 1 203134431 203134431 A T ADORA1 Silent p.I128I 0.45 TCGA-DD-AADF-01 1 227204675 227204675 C - CDC42BPA Frame_Shift_Del p.R1530Vfs*24 0.21 TCGA-DD-AADF-01 1 228879610 228879610 G T RHOU 3'UTR 0.37 TCGA-DD-AADF-01 1 237905615 237905615 A T RYR2 Missense_Mutation p.D3704V 0.32 benign(0.065) TCGA-DD-AADF-01 1 246923257 246923257 A T SCCPDH Splice_Site p.X272_splice 0.64 TCGA-DD-AADF-01 1 27720946 27720946 A T GPR3 Missense_Mutation p.Q215L 0.28 tolerated(0.18) benign(0.21) TCGA-DD-AADF-01 1 43011176 43011176 T A CCDC30 Nonsense_Mutation p.C117* 0.08 TCGA-DD-AADF-01 1 43903332 43903332 G A SZT2 Silent p.L2062L 0.36 TCGA-DD-AADF-01 1 50163062 50163062 A T AGBL4 Missense_Mutation p.F69I 0.31 deleterious(0.01) benign(0.305) TCGA-DD-AADF-01 1 55252674 55252674 C A TTC22 Missense_Mutation p.D272Y 0.33 deleterious(0) probably_damaging(0.961) TCGA-DD-AADF-01 1 55525335 55525335 A T PCSK9 Silent p.T560T 0.50 TCGA-DD-AADF-01 1 6228214 6228214 T A CHD5 Missense_Mutation p.K68I 0.33 deleterious_low_confidence(0) possibly_damaging(0.703) TCGA-DD-AADF-01 1 67889920 67889920 C A SERBP1 Missense_Mutation p.G261C 0.24 tolerated(0.09) probably_damaging(0.998) TCGA-DD-AADF-01 1 76255846 76255846 A T RABGGTB Intron 0.36 TCGA-DD-AADF-01 1 7721921 7721921 G C CAMTA1 Missense_Mutation p.S267T 0.73 tolerated(0.64) benign(0.003) TCGA-DD-AADF-01 1 82456883 82456883 A G LPHN2 3'UTR 0.32 TCGA-DD-AADF-01 1 86817829 86817829 T A ODF2L 3'UTR 0.60 TCGA-DD-AADF-01 1 87046048 87046048 T A CLCA4 3'UTR 0.20 TCGA-DD-AADF-01 1 91843601 91843601 G C HFM1 Missense_Mutation p.T459R 0.24 deleterious(0) probably_damaging(1) TCGA-DD-AADF-01 20 32026678 32026678 G C SNTA1 Silent p.L155L 0.16 TCGA-DD-AADF-01 20 32026712 32026712 G T SNTA1 Missense_Mutation p.S144Y 0.14 deleterious(0) probably_damaging(0.992) TCGA-DD-AADF-01 20 47268095 47268095 G A PREX1 Missense_Mutation p.R832W 0.28 deleterious(0.01) benign(0.339) TCGA-DD-AADF-01 20 61143475 61143475 A T C20orf166 5'Flank 0.56 TCGA-DD-AADF-01 20 61919056 61919056 G A ARFGAP1 Missense_Mutation p.C359Y 0.25 tolerated(0.57) benign(0.008) TCGA-DD-AADF-01 20 62038313 62038313 T A KCNQ2 Missense_Mutation p.Q768L 0.55 tolerated_low_confidence(0.39) benign(0.001) TCGA-DD-AADF-01 21 28338522 28338522 G T ADAMTS5 Silent p.P63P 0.62 TCGA-DD-AADF-01 21 38567975 38567975 G A TTC3 Splice_Site p.X1740_splice 0.22 TCGA-DD-AADF-01 21 38567997 38567997 G T TTC3 Nonsense_Mutation p.E1747* 0.21 TCGA-DD-AADF-01 21 46057580 46057580 G T KRTAP10-10 Silent p.P82P 0.38 TCGA-DD-AADF-01 22 20784091 20784091 T A SCARF2 Missense_Mutation p.H411L 0.44 deleterious(0.02) benign(0.209) TCGA-DD-AADF-01 22 20819206 20819206 C T KLHL22 Missense_Mutation p.V351I 0.34 tolerated(0.1) benign(0.185) TCGA-DD-AADF-01 22 36054890 36054908 CCTGGGTTTAGCCCTTGCC - APOL6 Frame_Shift_Del p.L94Qfs*27 0.22 TCGA-DD-AADF-01 22 50722376 50722376 C G PLXNB2 Silent p.L769L 0.32 TCGA-DD-AADF-01 2 101096962 101096962 C A NMS Nonsense_Mutation p.S114* 0.24 TCGA-DD-AADF-01 2 103142769 103142769 T A SLC9A4 Missense_Mutation p.S668T 0.55 tolerated(0.38) benign(0.002) TCGA-DD-AADF-01 2 108479161 108479161 A T RGPD4 Silent p.V743V 0.52 TCGA-DD-AADF-01 2 110375135 110375135 G A SOWAHC 3'UTR 0.10 TCGA-DD-AADF-01 2 122005784 122005784 C T TFCP2L1 Missense_Mutation p.E154K 0.28 deleterious(0) benign(0.385) TCGA-DD-AADF-01 2 125320846 125320846 A C CNTNAP5 Missense_Mutation p.T567P 0.36 deleterious(0.02) possibly_damaging(0.474) TCGA-DD-AADF-01 2 144525919 144525919 A G ARHGAP15 3'UTR 0.62 TCGA-DD-AADF-01 2 152500412 152500412 T C NEB Missense_Mutation p.N2626D 0.28 possibly_damaging(0.601) TCGA-DD-AADF-01 2 160086859 160086859 C T TANC1 Missense_Mutation p.A1641V 0.58 tolerated_low_confidence(0.15) benign(0.001) TCGA-DD-AADF-01 2 165550814 165550814 A C COBLL1 Missense_Mutation p.F1068V 0.29 tolerated(0.66) benign(0.009) TCGA-DD-AADF-01 2 168100021 168100021 C T XIRP2 Missense_Mutation p.L707F 0.33 probably_damaging(0.999) TCGA-DD-AADF-01 2 168100737 168100737 G A XIRP2 Silent p.V945V 0.60 TCGA-DD-AADF-01 2 173955762 173955762 G T MLTK Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-DD-AADF-01 2 179560620 179560620 T A TTN Silent p.V10393V 0.36 TCGA-DD-AADF-01 2 185803176 185803176 T A ZNF804A Missense_Mutation p.V1018E 0.23 deleterious(0.01) probably_damaging(0.981) TCGA-DD-AADF-01 2 207620148 207620148 T A MDH1B Silent p.I165I 0.27 TCGA-DD-AADF-01 2 208633602 208633602 A G FZD5 5'UTR 0.22 TCGA-DD-AADF-01 2 237285770 237285770 T A IQCA1 Nonsense_Mutation p.K513* 0.26 TCGA-DD-AADF-01 2 26950553 26950553 C A KCNK3 Missense_Mutation p.P101H 0.21 deleterious(0) probably_damaging(1) TCGA-DD-AADF-01 2 29355071 29355071 T A CLIP4 Silent p.T109T 0.69 TCGA-DD-AADF-01 2 42556058 42556058 A T EML4 Missense_Mutation p.I792F 0.17 deleterious(0) probably_damaging(0.987) TCGA-DD-AADF-01 2 49190816 49190816 T A FSHR Missense_Mutation p.I382L 0.08 tolerated(0.34) benign(0.006) TCGA-DD-AADF-01 2 53995015 53995015 C A CHAC2 5'UTR 0.59 TCGA-DD-AADF-01 2 61333732 61333732 A T KIAA1841 Missense_Mutation p.I516L 0.26 tolerated(0.95) benign(0) TCGA-DD-AADF-01 2 69049979 69049979 C A ARHGAP25 Missense_Mutation p.Q570K 0.07 tolerated(0.94) benign(0.001) TCGA-DD-AADF-01 2 75276482 75276482 A T TACR1 3'UTR 0.25 TCGA-DD-AADF-01 2 99013420 99013420 A T CNGA3 Missense_Mutation p.K596M 0.32 deleterious(0.01) possibly_damaging(0.682) TCGA-DD-AADF-01 3 109136694 109136694 C A RP11-702L6.4 RNA 0.15 TCGA-DD-AADF-01 3 113377186 113377186 T A KIAA2018 Missense_Mutation p.N1115Y 0.29 benign(0.11) TCGA-DD-AADF-01 3 121810486 121810486 T A CD86 Missense_Mutation p.F18Y 0.71 tolerated(0.14) benign(0.034) TCGA-DD-AADF-01 3 126260677 126260677 G C CHST13 Missense_Mutation p.E94D 0.32 tolerated(0.46) benign(0.237) TCGA-DD-AADF-01 3 12957128 12957128 T A IQSEC1 Missense_Mutation p.Q723L 0.28 tolerated(0.14) benign(0.023) TCGA-DD-AADF-01 3 143708415 143708415 G T C3orf58 Missense_Mutation p.C342F 0.29 deleterious(0) probably_damaging(0.994) TCGA-DD-AADF-01 3 143708416 143708416 C G C3orf58 Missense_Mutation p.C342W 0.30 deleterious(0) probably_damaging(0.999) TCGA-DD-AADF-01 3 178543411 178543411 T A KCNMB2 Missense_Mutation p.L31Q 0.54 tolerated(0.09) probably_damaging(0.999) TCGA-DD-AADF-01 3 35771014 35771014 T A ARPP21 Missense_Mutation p.L448H 0.59 deleterious(0) possibly_damaging(0.646) TCGA-DD-AADF-01 3 48420926 48420926 C A FBXW12 Missense_Mutation p.L218M 0.06 tolerated(0.17) probably_damaging(0.915) TCGA-DD-AADF-01 3 49756155 49756179 CTCGCGCGCAAAGTCGCGCACGGCG - AMIGO3 Frame_Shift_Del p.A241Tfs*33 0.20 TCGA-DD-AADF-01 3 49831234 49831234 A T CDHR4 Splice_Site p.X495_splice 0.60 TCGA-DD-AADF-01 3 49836807 49836807 T G CDHR4 Missense_Mutation p.Q38P 0.45 tolerated(0.23) benign(0.004) TCGA-DD-AADF-01 3 52439294 52439294 C T BAP1 Silent p.A316A 0.38 TCGA-DD-AADF-01 3 58095360 58095360 G C FLNB Missense_Mutation p.E753Q 0.22 tolerated(0.13) probably_damaging(0.974) TCGA-DD-AADF-01 3 69084229 69084229 T A TMF1 Missense_Mutation p.Q730L 0.60 deleterious(0.03) possibly_damaging(0.798) TCGA-DD-AADF-01 3 9594117 9594130 CGGTGAAGGAGCCC - LHFPL4 Frame_Shift_Del p.G79Lfs*65 0.16 TCGA-DD-AADF-01 3 97605567 97605567 A G CRYBG3 Silent p.E467E 0.54 TCGA-DD-AADF-01 3 98188430 98188430 G T OR5K1 Nonsense_Mutation p.E4* 0.55 TCGA-DD-AADF-01 4 101109256 101109256 A T DDIT4L Missense_Mutation p.C54S 0.27 deleterious(0.01) probably_damaging(0.963) TCGA-DD-AADF-01 4 113436007 113436007 A C NEUROG2 Missense_Mutation p.S209A 0.42 tolerated(0.07) possibly_damaging(0.661) TCGA-DD-AADF-01 4 140264113 140264113 A T NAA15 Missense_Mutation p.Q179L 0.44 tolerated(0.08) benign(0.211) TCGA-DD-AADF-01 4 159161486 159161486 T A TMEM144 Missense_Mutation p.F240I 0.29 deleterious(0.03) probably_damaging(0.943) TCGA-DD-AADF-01 4 169432856 169432856 T A PALLD Silent p.I67I 0.27 TCGA-DD-AADF-01 4 183063581 183063581 A T AC108142.1 RNA 0.32 TCGA-DD-AADF-01 4 37962314 37962314 A T PTTG2 Missense_Mutation p.S87C 0.62 tolerated(0.64) possibly_damaging(0.673) TCGA-DD-AADF-01 4 46086010 46086010 A G GABRG1 Missense_Mutation p.I105T 0.24 tolerated(0.42) benign(0.19) TCGA-DD-AADF-01 4 52945910 52945910 G T SPATA18 Missense_Mutation p.D394Y 0.32 deleterious(0) probably_damaging(0.996) TCGA-DD-AADF-01 4 5564738 5564738 A T EVC2 Missense_Mutation p.V1255E 0.38 tolerated(0.13) possibly_damaging(0.828) TCGA-DD-AADF-01 4 65145611 65145611 A G TECRL 3'UTR 0.33 TCGA-DD-AADF-01 4 69078179 69078179 A T TMPRSS11BNL Missense_Mutation p.C9S 0.31 tolerated(0.45) benign(0) TCGA-DD-AADF-01 4 79461941 79461941 A T FRAS1 Missense_Mutation p.Q3901L 0.58 possibly_damaging(0.623) TCGA-DD-AADF-01 4 96052479 96052479 G A BMPR1B Missense_Mutation p.A328T 0.30 tolerated(1) benign(0) TCGA-DD-AADF-01 5 107356642 107356642 A T FBXL17 Nonsense_Mutation p.C602* 0.25 TCGA-DD-AADF-01 5 1094313 1094313 C T SLC12A7 Missense_Mutation p.E59K 0.33 deleterious(0.04) benign(0.283) TCGA-DD-AADF-01 5 113698375 113698375 C G KCNN2 5'UTR 0.19 TCGA-DD-AADF-01 5 121405851 121405851 G A LOX Missense_Mutation p.P382S 0.14 deleterious(0) probably_damaging(0.929) TCGA-DD-AADF-01 5 135188444 135188444 G C SLC25A48 Missense_Mutation p.G119R 0.10 tolerated(0.29) probably_damaging(0.995) TCGA-DD-AADF-01 5 135651437 135651437 T G TRPC7 Missense_Mutation p.K271Q 0.52 deleterious(0.01) probably_damaging(0.917) TCGA-DD-AADF-01 5 137089993 137089993 G C HNRNPA0 5'UTR 0.19 TCGA-DD-AADF-01 5 140262151 140262151 G A PCDHA13 Missense_Mutation p.A100T 0.17 tolerated_low_confidence(0.05) benign(0.046) TCGA-DD-AADF-01 5 140744468 140744468 T A PCDHGA5 Missense_Mutation p.Y191N 0.41 tolerated_low_confidence(0.31) benign(0.05) TCGA-DD-AADF-01 5 145197614 145197614 T A PRELID2 Missense_Mutation p.S83C 0.18 deleterious(0.01) probably_damaging(0.928) TCGA-DD-AADF-01 5 170232776 170232776 C A GABRP Missense_Mutation p.R200S 0.36 tolerated(0.5) possibly_damaging(0.768) TCGA-DD-AADF-01 5 175520195 175520195 T A FAM153B Intron 0.77 TCGA-DD-AADF-01 5 176024938 176024938 T A GPRIN1 Missense_Mutation p.Q633L 0.62 tolerated(0.09) benign(0.033) TCGA-DD-AADF-01 5 192291 192291 T A LRRC14B Missense_Mutation p.L213Q 0.50 deleterious(0) probably_damaging(0.994) TCGA-DD-AADF-01 5 39202189 39202189 T A FYB Nonsense_Mutation p.K302* 0.40 TCGA-DD-AADF-01 5 66430418 66430418 A G MAST4 Missense_Mutation p.D765G 0.41 probably_damaging(0.999) TCGA-DD-AADF-01 5 66462123 66462123 G T MAST4 Missense_Mutation p.K2372N 0.15 possibly_damaging(0.777) TCGA-DD-AADF-01 5 71500918 71500918 T A MAP1B Missense_Mutation p.L2420Q 0.50 probably_damaging(0.999) TCGA-DD-AADF-01 5 82649150 82649150 G A XRCC4 3'UTR 0.12 TCGA-DD-AADF-01 5 94275891 94275891 T A MCTP1 Missense_Mutation p.D357V 0.55 deleterious(0) probably_damaging(0.954) TCGA-DD-AADF-01 5 95018538 95018538 C T SPATA9 Silent p.G7G 0.04 TCGA-DD-AADF-01 6 101054670 101054670 C A ASCC3 Nonsense_Mutation p.G1664* 0.44 TCGA-DD-AADF-01 6 101054671 101054671 C A ASCC3 Missense_Mutation p.K1663N 0.44 deleterious(0) probably_damaging(0.998) TCGA-DD-AADF-01 6 121401886 121401897 AAACCTAAATTT - TBC1D32 3'Flank 0.41 TCGA-DD-AADF-01 6 1313560 1313560 G T FOXQ1 Silent p.G207G 0.50 TCGA-DD-AADF-01 6 136665278 136665278 A C MAP7 3'UTR 0.54 TCGA-DD-AADF-01 6 147705934 147705934 A C STXBP5 3'Flank 0.41 TCGA-DD-AADF-01 6 154412441 154412441 T C OPRM1 Missense_Mutation p.L426P 0.43 deleterious(0) probably_damaging(0.998) TCGA-DD-AADF-01 6 16295435 16295435 C T GMPR 3'UTR 0.08 TCGA-DD-AADF-01 6 166580321 166580321 A T T Missense_Mutation p.V77E 0.88 deleterious(0) possibly_damaging(0.786) TCGA-DD-AADF-01 6 20131376 20131376 A G MBOAT1 Silent p.D158D 0.28 TCGA-DD-AADF-01 6 28359478 28359478 G A ZSCAN12 Nonsense_Mutation p.Q197* 0.74 TCGA-DD-AADF-01 6 28359479 28359479 C A ZSCAN12 Missense_Mutation p.K196N 0.77 tolerated(0.14) probably_damaging(0.987) TCGA-DD-AADF-01 6 28472123 28472123 G A GPX6 Silent p.V204V 0.30 TCGA-DD-AADF-01 6 31106509 31106509 C T PSORS1C1 Silent p.H40H 0.21 TCGA-DD-AADF-01 6 41566593 41566593 G C FOXP4 Silent p.L654L 0.41 TCGA-DD-AADF-01 6 46803136 46803136 A T MEP1A Missense_Mutation p.Q645L 0.27 tolerated(0.28) benign(0.011) TCGA-DD-AADF-01 6 47869646 47869646 G A PTCHD4 Intron 0.59 TCGA-DD-AADF-01 6 52053894 52053894 A T IL17A Missense_Mutation p.E91V 0.34 deleterious(0) probably_damaging(0.998) TCGA-DD-AADF-01 6 66115107 66115107 A G EYS Missense_Mutation p.V339A 0.50 tolerated(0.54) benign(0) TCGA-DD-AADF-01 6 75799957 75799957 C A COL12A1 Missense_Mutation p.S2937I 0.28 benign(0.269) TCGA-DD-AADF-01 6 75965616 75965616 A C TMEM30A 3'UTR 0.30 TCGA-DD-AADF-01 7 100676405 100676405 A T MUC17 Missense_Mutation p.T570S 0.24 probably_damaging(0.989) TCGA-DD-AADF-01 7 102603993 102603993 A T FBXL13 Silent p.T237T 0.24 TCGA-DD-AADF-01 7 107635345 107635345 A C LAMB1 Missense_Mutation p.I137R 0.50 deleterious(0) probably_damaging(1) TCGA-DD-AADF-01 7 123303032 123303032 A G LMOD2 Silent p.K464K 0.46 TCGA-DD-AADF-01 7 128407568 128407568 A T CALU Silent p.R242R 0.45 TCGA-DD-AADF-01 7 128612495 128612495 T A TNPO3 Silent p.T805T 0.39 TCGA-DD-AADF-01 7 140373721 140373721 C T ADCK2 Silent p.I197I 0.36 TCGA-DD-AADF-01 7 142639612 142639612 T C KEL Missense_Mutation p.Y649C 0.60 deleterious(0) probably_damaging(0.984) TCGA-DD-AADF-01 7 23391100 23391100 T C IGF2BP3 Silent p.R169R 0.18 TCGA-DD-AADF-01 7 31732136 31732136 A T PPP1R17 Missense_Mutation p.L27F 0.62 deleterious_low_confidence(0.05) possibly_damaging(0.505) TCGA-DD-AADF-01 7 44089828 44089828 C T DBNL Missense_Mutation p.L30F 0.24 deleterious(0) probably_damaging(0.953) TCGA-DD-AADF-01 7 45124713 45124713 T A NACAD Missense_Mutation p.S356C 0.29 deleterious(0) probably_damaging(0.993) TCGA-DD-AADF-01 8 101154393 101154393 G T FBXO43 Missense_Mutation p.T30K 0.07 tolerated_low_confidence(0.22) benign(0.002) TCGA-DD-AADF-01 8 117864283 117864305 GGCCTCCATCACTGACTCCTGGA - RAD21 Frame_Shift_Del p.L451Qfs*7 0.26 TCGA-DD-AADF-01 8 124658143 124658143 C T KLHL38 Missense_Mutation p.G528R 0.55 deleterious(0) probably_damaging(1) TCGA-DD-AADF-01 8 124693593 124693593 G T ANXA13 Missense_Mutation p.L321I 0.13 deleterious(0) possibly_damaging(0.668) TCGA-DD-AADF-01 8 125072802 125072802 G T FER1L6 Missense_Mutation p.G1000V 0.13 deleterious(0) probably_damaging(1) TCGA-DD-AADF-01 8 142490470 142490470 A T MROH5 3'UTR 0.56 TCGA-DD-AADF-01 8 145533158 145533158 G T HSF1 Missense_Mutation p.V82F 0.59 deleterious(0) possibly_damaging(0.806) TCGA-DD-AADF-01 8 145748008 145748008 C G LRRC24 Missense_Mutation p.E465Q 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.903) TCGA-DD-AADF-01 8 146067697 146067697 C T ZNF7 Missense_Mutation p.A402V 0.08 tolerated(0.33) benign(0.033) TCGA-DD-AADF-01 8 21891622 21891622 G T NPM2 Missense_Mutation p.A123S 0.42 tolerated(0.69) benign(0.005) TCGA-DD-AADF-01 8 41575622 41575622 A T ANK1 Splice_Site p.X435_splice 0.43 TCGA-DD-AADF-01 9 104192125 104192125 A C ALDOB Missense_Mutation p.L79R 0.20 deleterious(0) probably_damaging(0.983) TCGA-DD-AADF-01 9 111979288 111979288 T C EPB41L4B Missense_Mutation p.H516R 0.26 tolerated(0.09) possibly_damaging(0.475) TCGA-DD-AADF-01 9 113459680 113459680 T G MUSK Missense_Mutation p.Y188D 0.31 deleterious(0) probably_damaging(0.964) TCGA-DD-AADF-01 9 113459681 113459681 A T MUSK Missense_Mutation p.Y188F 0.30 deleterious(0) possibly_damaging(0.826) TCGA-DD-AADF-01 9 132397747 132397747 G A NTMT1 3'UTR 0.67 TCGA-DD-AADF-01 9 133936495 133936495 T A LAMC3 Silent p.P744P 0.74 TCGA-DD-AADF-01 9 138662770 138662770 C G KCNT1 Missense_Mutation p.R613G 0.37 tolerated(0.16) benign(0.002) TCGA-DD-AADF-01 9 139562709 139562709 G C EGFL7 5'UTR 0.24 TCGA-DD-AADF-01 9 20944683 20944683 A T FOCAD Missense_Mutation p.Q1155H 0.25 tolerated(0.18) benign(0.003) TCGA-DD-AADF-01 9 72006805 72006805 A T FAM189A2 3'UTR 0.63 TCGA-DD-AADF-01 9 74671740 74671740 T A C9orf57 Silent p.T61T 0.69 TCGA-DD-AADF-01 9 79324389 79324389 A T PRUNE2 Missense_Mutation p.L934Q 0.63 deleterious(0) possibly_damaging(0.794) TCGA-DD-AADF-01 9 84606346 84606346 T A SPATA31D1 Missense_Mutation p.L321M 0.70 deleterious(0.02) benign(0.311) TCGA-DD-AADF-01 9 95003228 95003228 G A IARS Silent p.L1065L 0.31 TCGA-DD-AADF-01 X 102331177 102331177 A T NXF3 3'UTR 0.57 TCGA-DD-AADF-01 X 105199690 105199690 A T NRK 3'UTR 0.24 TCGA-DD-AADF-01 X 106773690 106773690 A G FRMPD3 Missense_Mutation p.N100S 0.21 deleterious(0.01) benign(0.155) TCGA-DD-AADF-01 X 107975739 107975739 A T IRS4 3'UTR 0.63 TCGA-DD-AADF-01 X 111697871 111697871 T C ZCCHC16 5'UTR 0.06 TCGA-DD-AADF-01 X 114404863 114404863 T A LRCH2 Missense_Mutation p.S333C 0.27 tolerated(0.42) benign(0.302) TCGA-DD-AADF-01 X 123518224 123518224 T C TENM1 Missense_Mutation p.N2186S 0.31 deleterious(0) probably_damaging(0.99) TCGA-DD-AADF-01 X 130215821 130215821 T A ARHGAP36 Missense_Mutation p.L61Q 0.27 tolerated(0.05) probably_damaging(0.999) TCGA-DD-AADF-01 X 132669955 132669955 A T GPC3 3'UTR 0.53 TCGA-DD-AADF-01 X 144906061 144906061 A T SLITRK2 Silent p.G706G 0.31 TCGA-DD-AADF-01 X 152482858 152482858 T A MAGEA1 Silent p.S51S 0.51 TCGA-DD-AADF-01 X 153585946 153585946 C T FLNA Missense_Mutation p.D1601N 0.27 tolerated(0.05) benign(0.149) TCGA-DD-AADF-01 X 153690520 153690520 G C PLXNA3 Missense_Mutation p.G396A 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AADF-01 X 154065842 154065842 C T F8 3'UTR 0.29 TCGA-DD-AADF-01 X 24580385 24580385 T C PCYT1B 3'UTR 0.29 TCGA-DD-AADF-01 X 46893038 46893038 C T JADE3 Missense_Mutation p.L235F 0.05 deleterious(0.01) possibly_damaging(0.853) TCGA-DD-AADF-01 X 49021393 49021393 A C MAGIX Missense_Mutation p.K158Q 0.05 deleterious(0.01) possibly_damaging(0.876) TCGA-DD-AADF-01 X 49230888 49230888 C T GAGE2C Missense_Mutation p.P98S 0.39 benign(0.192) TCGA-DD-AADF-01 X 51079093 51079093 G A NUDT10 Intron 0.28 TCGA-DD-AADF-01 X 53279807 53279807 G T IQSEC2 Missense_Mutation p.P651T 0.27 tolerated(0.6) benign(0.219) TCGA-DD-AADF-01 X 53591649 53591649 A G HUWE1 Silent p.D2305D 0.28 TCGA-DD-AADF-01 X 54012273 54012273 C G PHF8 Missense_Mutation p.G738A 0.59 tolerated(0.26) benign(0.01) TCGA-DD-AADF-01 X 55026952 55026952 G A APEX2 Missense_Mutation p.G33R 0.31 tolerated(0.73) benign(0.002) TCGA-DD-AADF-01 X 69385902 69385902 T A IGBP1 3'UTR 0.29 TCGA-DD-AADF-01 X 70354642 70354642 C A MED12 Missense_Mutation p.Q1603K 0.33 benign(0.053) TCGA-DD-AADF-01 X 9677307 9677307 A G TBL1X Missense_Mutation p.K419R 0.36 tolerated(0.13) benign(0.26) TCGA-DD-AADG-01 10 101715378 101715378 G A DNMBP Missense_Mutation p.P618L 0.06 tolerated(0.37) benign(0.009) TCGA-DD-AADG-01 10 104489078 104489078 A G SFXN2 Missense_Mutation p.Q145R 0.42 tolerated(0.08) probably_damaging(0.992) TCGA-DD-AADG-01 10 117061424 117061424 T C ATRNL1 Missense_Mutation p.S897P 0.41 tolerated(0.13) possibly_damaging(0.744) TCGA-DD-AADG-01 10 1229065 1229065 G A ADARB2 3'UTR 0.50 TCGA-DD-AADG-01 10 48390744 48390744 A G RBP3 Missense_Mutation p.L45P 0.41 deleterious(0) probably_damaging(0.962) TCGA-DD-AADG-01 10 73111483 73111483 G C SLC29A3 Missense_Mutation p.S183T 0.30 tolerated(0.42) benign(0.062) TCGA-DD-AADG-01 10 74114738 74114738 C T DNAJB12 Missense_Mutation p.R7Q 0.61 deleterious_low_confidence(0) possibly_damaging(0.521) TCGA-DD-AADG-01 10 90966684 90966684 G T CH25H Silent p.L122L 0.29 TCGA-DD-AADG-01 10 91177145 91177145 A - IFIT5 Frame_Shift_Del p.G65Afs*16 0.23 TCGA-DD-AADG-01 11 117160194 117160194 A - BACE1 3'UTR 0.40 TCGA-DD-AADG-01 11 119170325 119170325 C T CBL Missense_Mutation p.T852I 0.06 tolerated_low_confidence(0.19) benign(0.013) TCGA-DD-AADG-01 11 30925106 30925106 A C DCDC1 Missense_Mutation p.L1478R 0.32 tolerated(0.37) benign(0.044) TCGA-DD-AADG-01 11 44099197 44099197 C G ACCS Intron 0.30 TCGA-DD-AADG-01 11 4675652 4675652 T C OR51E1 3'UTR 0.38 TCGA-DD-AADG-01 11 46771955 46771955 T C CKAP5 Missense_Mutation p.K1858R 0.07 tolerated(0.54) benign(0.086) TCGA-DD-AADG-01 11 4824778 4824778 A T OR52R1 Missense_Mutation p.L278Q 0.36 deleterious(0) possibly_damaging(0.824) TCGA-DD-AADG-01 11 5776539 5776539 C A OR52N4 Missense_Mutation p.S190Y 0.06 deleterious(0) probably_damaging(0.981) TCGA-DD-AADG-01 11 5776540 5776540 C T OR52N4 Silent p.S190S 0.06 TCGA-DD-AADG-01 11 57798664 57798664 G C OR6Q1 Silent p.V80V 0.10 TCGA-DD-AADG-01 11 57886498 57886498 A G OR9I1 Missense_Mutation p.L140P 0.09 deleterious(0.01) benign(0.317) TCGA-DD-AADG-01 11 58381796 58381796 G T ZFP91 Missense_Mutation p.R361L 0.37 deleterious(0) probably_damaging(0.999) TCGA-DD-AADG-01 11 63963275 63963275 A G STIP1 Missense_Mutation p.N221S 0.42 tolerated(0.38) benign(0.05) TCGA-DD-AADG-01 11 89385730 89385730 T C FOLH1B RNA 0.37 TCGA-DD-AADG-01 12 112516482 112516482 C T NAA25 Missense_Mutation p.V181I 0.22 tolerated(0.09) benign(0.071) TCGA-DD-AADG-01 12 120595713 120595713 G T GCN1L1 Silent p.I1009I 0.33 TCGA-DD-AADG-01 12 14577886 14577886 A C ATF7IP Missense_Mutation p.D346A 0.38 deleterious_low_confidence(0.05) possibly_damaging(0.728) TCGA-DD-AADG-01 12 20852565 20852565 C A SLCO1C1 Missense_Mutation p.P19T 0.37 deleterious_low_confidence(0.03) benign(0.011) TCGA-DD-AADG-01 12 31231447 31231447 G T DDX11 Silent p.G40G 0.07 TCGA-DD-AADG-01 12 46758276 46758276 T C SLC38A2 Missense_Mutation p.I257V 0.27 tolerated(0.72) benign(0.001) TCGA-DD-AADG-01 12 51510198 51510198 T C TFCP2 Missense_Mutation p.I119M 0.49 deleterious(0.04) probably_damaging(0.918) TCGA-DD-AADG-01 12 58018905 58018905 G A SLC26A10 Splice_Site p.X449_splice 0.39 TCGA-DD-AADG-01 12 65088546 65088546 G A RASSF3 Missense_Mutation p.E191K 0.05 deleterious(0.02) benign(0.033) TCGA-DD-AADG-01 12 6665212 6665212 G A IFFO1 5'UTR 0.45 TCGA-DD-AADG-01 12 6887494 6887511 CCGGAGCCGGAGCCGGAG - LAG3 In_Frame_Del p.E515_P520del 0.42 TCGA-DD-AADG-01 12 78522622 78522622 G A NAV3 Missense_Mutation p.G1473R 0.40 deleterious(0.01) probably_damaging(1) TCGA-DD-AADG-01 12 82792710 82792710 A G METTL25 Missense_Mutation p.H223R 0.45 tolerated(0.06) benign(0.065) TCGA-DD-AADG-01 13 42874405 42874405 A G AKAP11 Missense_Mutation p.H508R 0.06 tolerated(0.36) benign(0.142) TCGA-DD-AADG-01 13 50586458 50586458 T C TRIM13 Missense_Mutation p.F131L 0.06 tolerated(0.32) benign(0.255) TCGA-DD-AADG-01 13 77566329 77566329 G C CLN5 Silent p.L81L 0.05 TCGA-DD-AADG-01 14 105350819 105350819 G A CEP170B Missense_Mutation p.G568E 0.45 deleterious(0) probably_damaging(1) TCGA-DD-AADG-01 14 106621914 106621914 C A IGHV3-16 Missense_Mutation p.A111S 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.662) TCGA-DD-AADG-01 14 107083486 107083486 T A IGHV4-59 Missense_Mutation p.T40S 0.06 tolerated_low_confidence(0.05) benign(0.199) TCGA-DD-AADG-01 14 20612471 20612471 T C OR4N5 Missense_Mutation p.F193L 0.28 deleterious(0.01) benign(0.171) TCGA-DD-AADG-01 14 20711205 20711205 C G OR11H4 Silent p.S85S 0.08 TCGA-DD-AADG-01 14 24774183 24774183 A T NOP9 Missense_Mutation p.H598L 0.32 deleterious(0.01) possibly_damaging(0.879) TCGA-DD-AADG-01 14 45658480 45658480 A G FANCM Missense_Mutation p.N1752S 0.35 tolerated(1) benign(0.001) TCGA-DD-AADG-01 14 60976599 60976599 C A SIX6 Silent p.L161L 0.36 TCGA-DD-AADG-01 14 75500136 75500136 T A MLH3 Missense_Mutation p.E1234V 0.24 deleterious(0) probably_damaging(1) TCGA-DD-AADG-01 14 78174474 78174474 G A SLIRP Missense_Mutation p.R7K 0.47 tolerated(0.24) unknown(0) TCGA-DD-AADG-01 15 40093462 40093462 C T GPR176 Silent p.K473K 0.06 TCGA-DD-AADG-01 15 40763663 40763663 G A CHST14 Missense_Mutation p.R84H 0.33 tolerated(0.11) benign(0.002) TCGA-DD-AADG-01 15 40763664 40763664 C A CHST14 Silent p.R84R 0.33 TCGA-DD-AADG-01 15 48063146 48063146 C T SEMA6D Missense_Mutation p.H796Y 0.06 deleterious(0.01) benign(0.222) TCGA-DD-AADG-01 15 50870833 50870833 C A TRPM7 Intron 0.34 TCGA-DD-AADG-01 15 60747270 60747270 T C NARG2 Missense_Mutation p.N292S 0.38 deleterious(0.04) benign(0.406) TCGA-DD-AADG-01 16 11217616 11217616 C T CLEC16A Silent p.G762G 0.17 TCGA-DD-AADG-01 16 18437762 18437762 C A RP11-1212A22.1 RNA 0.20 TCGA-DD-AADG-01 16 30097529 30097529 A - TBX6 3'UTR 0.17 TCGA-DD-AADG-01 16 30097548 30097548 A C TBX6 Nonstop_Mutation p.*437Gext*81 0.20 TCGA-DD-AADG-01 16 613776 613776 C A C16orf11 Nonsense_Mutation p.S161* 0.09 TCGA-DD-AADG-01 16 71888884 71888884 G T ATXN1L 3'UTR 0.40 TCGA-DD-AADG-01 17 10304490 10304490 G A MYH8 Nonsense_Mutation p.Q1043* 0.07 TCGA-DD-AADG-01 17 10447325 10447325 G C MYH2 Missense_Mutation p.S181C 0.63 deleterious(0) benign(0.404) TCGA-DD-AADG-01 17 18220404 18220404 G A SMCR8 Missense_Mutation p.G434E 0.12 tolerated(0.42) benign(0.142) TCGA-DD-AADG-01 17 28619000 28619000 G C BLMH 5'UTR 0.23 TCGA-DD-AADG-01 17 3806860 3806860 C A P2RX1 Missense_Mutation p.R197L 0.64 tolerated(0.06) benign(0.036) TCGA-DD-AADG-01 17 48817694 48817694 A T LUC7L3 Missense_Mutation p.N65I 0.54 tolerated(0.08) unknown(0) TCGA-DD-AADG-01 17 50235151 50235151 T A CA10 5'UTR 0.26 TCGA-DD-AADG-01 17 56060489 56060489 T G VEZF1 Missense_Mutation p.K100T 0.27 deleterious(0) probably_damaging(0.991) TCGA-DD-AADG-01 17 74001653 74001653 G A CDK3 3'UTR 0.20 TCGA-DD-AADG-01 17 78704430 78704430 T C RPTOR Missense_Mutation p.V193A 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-DD-AADG-01 17 79495626 79495626 C T FSCN2 Silent p.Y23Y 0.28 TCGA-DD-AADG-01 17 79981492 79981492 G A LRRC45 5'UTR 0.60 TCGA-DD-AADG-01 17 80038048 80038048 C G FASN Missense_Mutation p.V2372L 0.48 tolerated(0.22) benign(0.02) TCGA-DD-AADG-01 18 28719849 28719849 G A DSC1 Nonsense_Mutation p.Q509* 0.40 TCGA-DD-AADG-01 18 29052251 29052251 C T DSG3 Silent p.A634A 0.27 TCGA-DD-AADG-01 18 67671229 67671229 T G RTTN 3'UTR 0.33 TCGA-DD-AADG-01 18 77208981 77208981 C A NFATC1 Missense_Mutation p.A516D 0.50 deleterious(0) probably_damaging(0.985) TCGA-DD-AADG-01 19 10092740 10092740 C T COL5A3 Splice_Site p.X820_splice 0.39 TCGA-DD-AADG-01 19 11350417 11350428 TGACCCTGCTCT - C19orf80 In_Frame_Del p.T36_F39del 0.26 TCGA-DD-AADG-01 19 15758109 15758109 T C CYP4F3 Missense_Mutation p.F167S 0.06 deleterious(0) probably_damaging(0.987) TCGA-DD-AADG-01 19 1912991 1912991 G T ADAT3 Silent p.V315V 0.05 TCGA-DD-AADG-01 19 19756765 19756765 T G ATP13A1 Missense_Mutation p.E1093A 0.23 deleterious(0.02) benign(0.029) TCGA-DD-AADG-01 19 19757066 19757066 A C ATP13A1 Missense_Mutation p.F1066V 0.05 tolerated(0.12) probably_damaging(0.967) TCGA-DD-AADG-01 19 2785573 2785573 G A THOP1 5'UTR 0.48 TCGA-DD-AADG-01 19 31769256 31769256 A G TSHZ3 Silent p.T481T 0.32 TCGA-DD-AADG-01 19 36216399 36216399 G T KMT2B Missense_Mutation p.C1221F 0.43 benign(0.012) TCGA-DD-AADG-01 19 48048805 48048805 T A ZNF541 Silent p.P327P 0.31 TCGA-DD-AADG-01 19 52031019 52031019 G T SIGLEC6 Silent p.V390V 0.12 TCGA-DD-AADG-01 19 52196097 52196097 G T MIRLET7E RNA 0.36 TCGA-DD-AADG-01 19 54395040 54395040 G T PRKCG Silent p.T214T 0.39 TCGA-DD-AADG-01 19 55599118 55599118 G A EPS8L1 3'UTR 0.21 TCGA-DD-AADG-01 19 57876259 57876259 A G TRAPPC2P1 Missense_Mutation p.M20V 0.05 tolerated(0.2) benign(0.003) TCGA-DD-AADG-01 19 58850111 58850111 A T ZSCAN22 Missense_Mutation p.S299C 0.39 deleterious(0.01) benign(0.039) TCGA-DD-AADG-01 19 5925741 5925741 T A RANBP3 Missense_Mutation p.N274I 0.30 deleterious(0) benign(0.09) TCGA-DD-AADG-01 19 6743800 6743800 C T TRIP10 Nonsense_Mutation p.R199* 0.29 TCGA-DD-AADG-01 1 112269468 112269468 C G FAM212B 3'UTR 0.45 TCGA-DD-AADG-01 1 115267860 115267860 C T CSDE1 Missense_Mutation p.V625M 0.26 deleterious(0) possibly_damaging(0.794) TCGA-DD-AADG-01 1 12820859 12820859 G T C1orf158 Missense_Mutation p.R187L 0.24 tolerated(0.16) possibly_damaging(0.831) TCGA-DD-AADG-01 1 13475241 13475241 C T PRAMEF18 Silent p.E296E 0.13 TCGA-DD-AADG-01 1 152128252 152128252 C A RPTN Missense_Mutation p.Q441H 0.22 deleterious(0) probably_damaging(0.98) TCGA-DD-AADG-01 1 153955327 153955327 G A RAB13 Intron 0.05 TCGA-DD-AADG-01 1 15818008 15818011 TTTG - CASP9 3'Flank 0.23 TCGA-DD-AADG-01 1 169823447 169823447 C T SCYL3 Silent p.Q711Q 0.06 TCGA-DD-AADG-01 1 183441679 183441679 G T SMG7 5'UTR 0.32 TCGA-DD-AADG-01 1 186113435 186113435 A C HMCN1 Silent p.A4685A 0.06 TCGA-DD-AADG-01 1 203455845 203455845 A G PRELP Missense_Mutation p.T329A 0.30 deleterious(0.02) benign(0.062) TCGA-DD-AADG-01 1 206681239 206681239 G C RASSF5 Missense_Mutation p.D102H 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-DD-AADG-01 1 218480862 218480862 G A RRP15 Missense_Mutation p.R198H 0.28 deleterious(0.04) benign(0.348) TCGA-DD-AADG-01 1 22005824 22005825 - A USP48 3'UTR 0.30 TCGA-DD-AADG-01 1 247587388 247587388 C A NLRP3 Missense_Mutation p.H215N 0.17 tolerated(0.25) benign(0.001) TCGA-DD-AADG-01 1 3334551 3334551 T A PRDM16 Missense_Mutation p.Y951N 0.07 deleterious(0) possibly_damaging(0.781) TCGA-DD-AADG-01 1 33832725 33832725 A G PHC2 Missense_Mutation p.I323T 0.06 deleterious(0) benign(0.002) TCGA-DD-AADG-01 1 40366463 40366463 G T MYCL Intron 0.21 TCGA-DD-AADG-01 1 47882609 47882609 C A FOXE3 Missense_Mutation p.P208T 0.30 tolerated(0.66) possibly_damaging(0.908) TCGA-DD-AADG-01 1 55624658 55624658 G A USP24 Missense_Mutation p.R374C 0.35 tolerated(0.16) possibly_damaging(0.781) TCGA-DD-AADG-01 1 6029260 6029260 G A NPHP4 Silent p.V113V 0.39 TCGA-DD-AADG-01 1 62550246 62550246 G A INADL Missense_Mutation p.E1435K 0.07 deleterious(0) probably_damaging(0.995) TCGA-DD-AADG-01 1 64021164 64021165 - TA EFCAB7 Frame_Shift_Ins p.F399Yfs*17 0.27 TCGA-DD-AADG-01 1 67450363 67450363 A CAGAT MIER1 Frame_Shift_Ins p.D493Afs*6 0.41 TCGA-DD-AADG-01 1 7796520 7796520 G C CAMTA1 Missense_Mutation p.K1061N 0.04 tolerated(0.09) probably_damaging(0.996) TCGA-DD-AADG-01 20 23549024 23549024 G T CST9L Missense_Mutation p.Q22K 0.39 tolerated(0.17) possibly_damaging(0.539) TCGA-DD-AADG-01 20 44171410 44171410 T C EPPIN Missense_Mutation p.Y107C 0.32 deleterious(0.03) probably_damaging(0.986) TCGA-DD-AADG-01 20 49577678 49577678 C T MOCS3 3'UTR 0.38 TCGA-DD-AADG-01 20 57829044 57829044 T C ZNF831 Missense_Mutation p.L1427P 0.29 deleterious(0.01) benign(0.367) TCGA-DD-AADG-01 21 19726182 19726182 T A TMPRSS15 Splice_Site p.X294_splice 0.07 TCGA-DD-AADG-01 21 43802299 43802299 G A TMPRSS3 Missense_Mutation p.S276F 0.27 deleterious(0.03) possibly_damaging(0.601) TCGA-DD-AADG-01 21 45152250 45152250 T C PDXK Intron 0.35 TCGA-DD-AADG-01 22 17073436 17073439 TCCA - CCT8L2 Frame_Shift_Del p.M1_?2 0.40 TCGA-DD-AADG-01 22 30127136 30127136 T C ZMAT5 3'UTR 0.36 TCGA-DD-AADG-01 22 32546378 32546378 A G C22orf42 Silent p.L194L 0.37 TCGA-DD-AADG-01 22 41616753 41616753 T A L3MBTL2 Missense_Mutation p.L245H 0.43 deleterious(0) probably_damaging(0.999) TCGA-DD-AADG-01 22 44237809 44237809 G A SULT4A1 Missense_Mutation p.T58I 0.36 deleterious(0.02) probably_damaging(0.96) TCGA-DD-AADG-01 2 131801059 131801059 T A ARHGEF4 Missense_Mutation p.I501N 0.33 deleterious(0) probably_damaging(0.994) TCGA-DD-AADG-01 2 1499810 1499810 C A TPO Missense_Mutation p.L686M 0.35 deleterious(0) probably_damaging(1) TCGA-DD-AADG-01 2 161138808 161138808 T A RBMS1 Intron 0.05 TCGA-DD-AADG-01 2 177016412 177016412 C G HOXD4 Missense_Mutation p.F17L 0.40 deleterious(0) possibly_damaging(0.615) TCGA-DD-AADG-01 2 196765131 196765131 G T DNAH7 Silent p.R1475R 0.37 TCGA-DD-AADG-01 2 201357908 201357908 G T KCTD18 Missense_Mutation p.P251T 0.36 deleterious(0) possibly_damaging(0.856) TCGA-DD-AADG-01 2 203383670 203383670 G A BMPR2 Silent p.V249V 0.07 TCGA-DD-AADG-01 2 207622077 207622077 A T MDH1B Missense_Mutation p.C52S 0.45 deleterious(0) probably_damaging(0.992) TCGA-DD-AADG-01 2 21228569 21228569 T C APOB Missense_Mutation p.K3724R 0.37 benign(0.012) TCGA-DD-AADG-01 2 219689003 219689003 A G PRKAG3 Missense_Mutation p.L432P 0.05 deleterious(0.02) probably_damaging(0.984) TCGA-DD-AADG-01 2 233633278 233633278 A T KCNJ13 Missense_Mutation p.F236I 0.32 deleterious(0.02) benign(0.091) TCGA-DD-AADG-01 2 233674449 233674449 G T GIGYF2 Missense_Mutation p.R630L 0.42 probably_damaging(0.962) TCGA-DD-AADG-01 2 234399852 234399852 C A USP40 Missense_Mutation p.E1002D 0.40 tolerated(0.14) benign(0.207) TCGA-DD-AADG-01 2 37297440 37297440 T C HEATR5B Missense_Mutation p.K287R 0.06 tolerated(0.75) benign(0.001) TCGA-DD-AADG-01 2 43452453 43452453 C A ZFP36L2 Nonsense_Mutation p.E164* 0.35 TCGA-DD-AADG-01 2 61169327 61169327 C T PUS10 3'UTR 0.35 TCGA-DD-AADG-01 2 61542016 61542016 T C USP34 Missense_Mutation p.I1126V 0.04 tolerated(0.21) benign(0.021) TCGA-DD-AADG-01 2 95542383 95542383 C A TEKT4 Missense_Mutation p.L393I 0.37 deleterious(0) probably_damaging(0.996) TCGA-DD-AADG-01 2 99012463 99012463 G T CNGA3 Missense_Mutation p.R277L 0.24 deleterious(0) probably_damaging(0.998) TCGA-DD-AADG-01 3 112729968 112729968 T C C3orf17 Silent p.K279K 0.28 TCGA-DD-AADG-01 3 118753538 118753538 C A IGSF11 5'UTR 0.29 TCGA-DD-AADG-01 3 142522995 142522995 T A TRPC1 Missense_Mutation p.L645H 0.36 deleterious(0) probably_damaging(1) TCGA-DD-AADG-01 3 159713248 159713248 T A IL12A Missense_Mutation p.F222I 0.09 tolerated(0.36) possibly_damaging(0.602) TCGA-DD-AADG-01 3 182990998 182990998 A T B3GNT5 3'UTR 0.39 TCGA-DD-AADG-01 3 192078328 192078328 C T FGF12 Splice_Site p.X67_splice 0.40 TCGA-DD-AADG-01 3 41266113 41266113 C G CTNNB1 Missense_Mutation p.S37C 0.31 deleterious(0) probably_damaging(0.986) TCGA-DD-AADG-01 3 46414720 46414720 T C CCR5 Silent p.F109F 0.40 TCGA-DD-AADG-01 3 4853115 4853115 A G ITPR1 Missense_Mutation p.D2465G 0.52 deleterious(0.01) possibly_damaging(0.595) TCGA-DD-AADG-01 3 62459851 62459851 T A CADPS Missense_Mutation p.Q1158H 0.31 deleterious(0.05) benign(0.216) TCGA-DD-AADG-01 3 62459893 62459893 G A CADPS Silent p.A1144A 0.05 TCGA-DD-AADG-01 4 110662035 110662035 G C CFI 3'UTR 0.06 TCGA-DD-AADG-01 4 111539720 111539720 G T PITX2 Missense_Mutation p.P179Q 0.36 deleterious(0.01) probably_damaging(0.916) TCGA-DD-AADG-01 4 113153147 113153147 A C AP1AR 5'UTR 0.07 TCGA-DD-AADG-01 4 139965969 139965969 C A CCRN4L Missense_Mutation p.Q213K 0.39 tolerated(0.26) benign(0.063) TCGA-DD-AADG-01 4 173730589 173730589 G A GALNTL6 Missense_Mutation p.G211R 0.06 deleterious(0) probably_damaging(1) TCGA-DD-AADG-01 4 186544895 186544895 T C SORBS2 Missense_Mutation p.N659S 0.38 tolerated(0.06) benign(0.011) TCGA-DD-AADG-01 4 30921844 30921844 T A PCDH7 Missense_Mutation p.C1082S 0.39 tolerated(0.38) probably_damaging(0.948) TCGA-DD-AADG-01 4 3129224 3129224 A G HTT Missense_Mutation p.M546V 0.46 benign(0.001) TCGA-DD-AADG-01 4 47163447 47163447 T A GABRB1 Missense_Mutation p.I141N 0.06 deleterious(0) probably_damaging(0.997) TCGA-DD-AADG-01 4 48512966 48512966 C T FRYL Silent p.E2727E 0.35 TCGA-DD-AADG-01 4 71467187 71467187 T C AMBN Missense_Mutation p.L116S 0.34 deleterious(0.04) probably_damaging(0.965) TCGA-DD-AADG-01 4 74282058 74282071 AATTCCAGAATGCG - ALB Splice_Site p.X426_splice 0.36 TCGA-DD-AADG-01 4 83891563 83891563 T C LIN54 Missense_Mutation p.S290G 0.40 tolerated(0.33) benign(0.034) TCGA-DD-AADG-01 5 102887925 102887925 C G NUDT12 Missense_Mutation p.R424T 0.20 deleterious(0) probably_damaging(0.967) TCGA-DD-AADG-01 5 113698857 113698857 G T KCNN2 Nonsense_Mutation p.E129* 0.24 TCGA-DD-AADG-01 5 121187759 121187759 C A FTMT Missense_Mutation p.P34Q 0.33 deleterious_low_confidence(0.02) benign(0.209) TCGA-DD-AADG-01 5 133481891 133481891 G A TCF7 Intron 0.23 TCGA-DD-AADG-01 5 140537758 140537758 C A PCDHB17 3'UTR 0.10 TCGA-DD-AADG-01 5 145640456 145640456 A G RBM27 Missense_Mutation p.I630V 0.05 deleterious(0.01) possibly_damaging(0.802) TCGA-DD-AADG-01 5 176026192 176026192 C - GPRIN1 Frame_Shift_Del p.G215Efs*3 0.15 TCGA-DD-AADG-01 5 178418902 178418902 C T GRM6 Silent p.G229G 0.12 TCGA-DD-AADG-01 5 179069928 179069928 G C C5orf60 Missense_Mutation p.H209D 0.21 tolerated(0.16) possibly_damaging(0.702) TCGA-DD-AADG-01 5 23527459 23527459 G A PRDM9 Silent p.G754G 0.11 TCGA-DD-AADG-01 5 37302983 37302983 T C NUP155 Silent p.L1115L 0.43 TCGA-DD-AADG-01 5 61877274 61877274 T G LRRC70 3'UTR 0.04 TCGA-DD-AADG-01 5 68411780 68411780 A G SLC30A5 Missense_Mutation p.I271V 0.31 tolerated(0.55) benign(0.017) TCGA-DD-AADG-01 6 117746958 117746959 - T ROS1 5'UTR 0.29 TCGA-DD-AADG-01 6 117890868 117890868 A C GOPC Missense_Mutation p.I315S 0.06 deleterious(0) probably_damaging(0.997) TCGA-DD-AADG-01 6 131216151 131216151 A C EPB41L2 Missense_Mutation p.S449A 0.20 deleterious(0) probably_damaging(0.965) TCGA-DD-AADG-01 6 13365293 13365293 C G GFOD1 Silent p.V285V 0.36 TCGA-DD-AADG-01 6 17601130 17601130 C G FAM8A1 Missense_Mutation p.P164A 0.08 tolerated(0.54) benign(0.018) TCGA-DD-AADG-01 6 29342336 29342336 A T OR12D3 Missense_Mutation p.H243Q 0.04 deleterious(0) probably_damaging(1) TCGA-DD-AADG-01 6 31785702 31785702 A G HSPA1A 3'UTR 0.27 TCGA-DD-AADG-01 6 4032939 4032939 C T PRPF4B Silent p.S396S 0.12 TCGA-DD-AADG-01 6 44414400 44414400 A - CDC5L Frame_Shift_Del p.R787Sfs*12 0.18 TCGA-DD-AADG-01 6 50681591 50681591 G A TFAP2D 5'UTR 0.10 TCGA-DD-AADG-01 6 83831694 83831694 T G DOPEY1 Nonsense_Mutation p.L382* 0.03 TCGA-DD-AADG-01 6 97247282 97247282 T G GPR63 Missense_Mutation p.K109T 0.39 deleterious(0) probably_damaging(0.962) TCGA-DD-AADG-01 7 117832038 117832043 AAATTC - NAA38 In_Frame_Del p.L91_S93delinsF 0.20 TCGA-DD-AADG-01 7 117864717 117864717 G A ANKRD7 5'Flank 0.34 TCGA-DD-AADG-01 7 126173564 126173564 C A GRM8 Silent p.V624V 0.31 TCGA-DD-AADG-01 7 138239669 138239669 T G TRIM24 Silent p.P496P 0.28 TCGA-DD-AADG-01 7 141735987 141735987 G T MGAM Missense_Mutation p.G660C 0.22 deleterious(0) probably_damaging(1) TCGA-DD-AADG-01 7 141735988 141735988 G T MGAM Missense_Mutation p.G660V 0.23 deleterious(0) probably_damaging(1) TCGA-DD-AADG-01 7 19156374 19156374 T C TWIST1 Missense_Mutation p.R191G 0.39 deleterious(0) probably_damaging(1) TCGA-DD-AADG-01 7 48314641 48314641 T C ABCA13 Missense_Mutation p.I1793T 0.38 benign(0.001) TCGA-DD-AADG-01 7 6505873 6505873 C A KDELR2 Nonsense_Mutation p.E145* 0.28 TCGA-DD-AADG-01 7 72413572 72413572 A G POM121 Missense_Mutation p.M749V 0.18 tolerated(0.52) benign(0) TCGA-DD-AADG-01 7 75932030 75932030 A G HSPB1 Translation_Start_Site p.M1? 0.25 deleterious(0.05) probably_damaging(0.993) TCGA-DD-AADG-01 7 82538312 82538312 C A PCLO Nonsense_Mutation p.E4440* 0.30 TCGA-DD-AADG-01 7 94057146 94057146 C G COL1A2 Missense_Mutation p.P1159A 0.24 unknown(0) TCGA-DD-AADG-01 8 104341972 104341972 A G FZD6 Missense_Mutation p.Y544C 0.04 tolerated_low_confidence(0.13) benign(0.008) TCGA-DD-AADG-01 8 107705036 107705036 T G OXR1 Silent p.T203T 0.40 TCGA-DD-AADG-01 8 109226846 109226846 T C EIF3E Missense_Mutation p.I351V 0.05 tolerated(0.07) benign(0.207) TCGA-DD-AADG-01 8 121296007 121296007 T A COL14A1 Silent p.V1319V 0.45 TCGA-DD-AADG-01 8 121468896 121468896 A T MTBP Missense_Mutation p.I245L 0.27 deleterious(0.03) possibly_damaging(0.622) TCGA-DD-AADG-01 8 124696885 124696885 C A ANXA13 Nonsense_Mutation p.E307* 0.32 TCGA-DD-AADG-01 8 124696886 124696886 C A ANXA13 Missense_Mutation p.E306D 0.32 tolerated(1) benign(0.149) TCGA-DD-AADG-01 8 142486217 142486217 C A MROH5 Intron 0.36 TCGA-DD-AADG-01 8 143857324 143857324 C T LYNX1 Missense_Mutation p.A18T 0.32 deleterious(0) benign(0.012) TCGA-DD-AADG-01 8 55539282 55539282 G T RP1 Missense_Mutation p.C947F 0.05 tolerated(0.69) benign(0.007) TCGA-DD-AADG-01 8 67968770 67968802 CAAAATCTTCTATTTTATTAAGTGGAATAGTCT GTC COPS5 In_Frame_Del p.Q204_G215delinsRR 0.20 TCGA-DD-AADG-01 9 113550073 113550073 G A MUSK Missense_Mutation p.A628T 0.32 deleterious(0.03) probably_damaging(0.987) TCGA-DD-AADG-01 9 116247941 116247941 G T RGS3 Missense_Mutation p.L219F 0.37 deleterious(0) probably_damaging(1) TCGA-DD-AADG-01 9 123298694 123298694 G A CDK5RAP2 Silent p.H206H 0.40 TCGA-DD-AADG-01 9 127119082 127119082 A C PSMB7 Missense_Mutation p.F228C 0.37 deleterious(0.01) benign(0.021) TCGA-DD-AADG-01 9 130374600 130374600 C G STXBP1 5'UTR 0.44 TCGA-DD-AADG-01 9 130494166 130494176 AGGCCAGGGCC GCT TOR2A 3'UTR 0.32 TCGA-DD-AADG-01 9 13110739 13110739 C A MPDZ Missense_Mutation p.V1880F 0.29 deleterious(0) probably_damaging(0.949) TCGA-DD-AADG-01 9 138235220 138235220 G T C9orf62 5'UTR 0.05 TCGA-DD-AADG-01 9 21974751 21974760 CTACCCGACC - CDKN2A Frame_Shift_Del p.G23Rfs*27 0.30 TCGA-DD-AADG-01 9 32424547 32424547 G A ACO1 Missense_Mutation p.V358I 0.07 tolerated(0.14) benign(0.003) TCGA-DD-AADG-01 9 38571955 38571955 C A ANKRD18A 3'UTR 0.03 TCGA-DD-AADG-01 9 84547248 84547248 C T RP11-383M4.6 Intron 0.25 TCGA-DD-AADG-01 9 90219888 90219888 A - DAPK1 Frame_Shift_Del p.K28Rfs*29 0.26 TCGA-DD-AADG-01 X 107224277 107224277 C A TEX13B 3'UTR 0.07 TCGA-DD-AADG-01 X 130420012 130420012 A G IGSF1 Silent p.P36P 0.60 TCGA-DD-AADG-01 X 135618164 135618164 G A VGLL1 5'UTR 0.87 TCGA-DD-AADG-01 X 142716502 142716502 T A SLITRK4 Missense_Mutation p.K808M 0.10 deleterious(0.01) probably_damaging(0.994) TCGA-DD-AADG-01 X 142716504 142716504 C G SLITRK4 Missense_Mutation p.R807S 0.11 tolerated(0.67) benign(0.037) TCGA-DD-AADG-01 X 152482572 152482572 C A MAGEA1 Missense_Mutation p.A147S 0.06 deleterious(0.03) probably_damaging(0.985) TCGA-DD-AADG-01 X 32827649 32827649 T A DMD Nonsense_Mutation p.R204* 0.59 TCGA-DD-AADG-01 X 63412647 63412647 T C AMER1 Missense_Mutation p.S174G 0.76 deleterious(0.03) possibly_damaging(0.595) TCGA-DD-AADG-01 X 71521551 71521551 C T CITED1 3'UTR 0.09 TCGA-DD-AADG-01 X 77258571 77258571 A T ATP7A Silent p.G515G 0.86 TCGA-DD-AADI-01 10 127460888 127460888 T C MMP21 Missense_Mutation p.H293R 0.30 deleterious(0) probably_damaging(0.998) TCGA-DD-AADI-01 10 135440090 135440090 C T FRG2B Missense_Mutation p.E53K 0.13 deleterious(0.01) probably_damaging(0.99) TCGA-DD-AADI-01 10 17645602 17645602 G A PTPLA Missense_Mutation p.S147L 0.32 deleterious(0.03) benign(0.151) TCGA-DD-AADI-01 10 26446396 26446396 G A MYO3A Missense_Mutation p.R984Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-DD-AADI-01 10 73560411 73560411 T C CDH23 Missense_Mutation p.S221P 0.34 deleterious(0.02) possibly_damaging(0.721) TCGA-DD-AADI-01 10 88717338 88717338 C T MMRN2 5'UTR 0.31 TCGA-DD-AADI-01 10 98762647 98762647 A T SLIT1 Missense_Mutation p.L1323Q 0.41 tolerated(0.13) probably_damaging(0.999) TCGA-DD-AADI-01 11 101863554 101863554 T A KIAA1377 Nonsense_Mutation p.L1097* 0.29 TCGA-DD-AADI-01 11 118347552 118347552 G A KMT2A Silent p.V1063V 0.05 TCGA-DD-AADI-01 11 1258280 1258280 C T MUC5B Silent p.C1061C 0.19 TCGA-DD-AADI-01 11 24518741 24518741 G T LUZP2 5'UTR 0.33 TCGA-DD-AADI-01 11 32126688 32126688 G T RCN1 3'UTR 0.06 TCGA-DD-AADI-01 11 43421488 43421488 A T TTC17 Missense_Mutation p.D370V 0.07 deleterious(0) probably_damaging(0.988) TCGA-DD-AADI-01 11 65819845 65819845 C G SF3B2 5'UTR 0.10 TCGA-DD-AADI-01 11 6588692 6588692 A G DNHD1 Missense_Mutation p.K3985E 0.06 benign(0.006) TCGA-DD-AADI-01 11 75280184 75280184 A G SERPINH1 Missense_Mutation p.K308E 0.08 deleterious(0) probably_damaging(0.999) TCGA-DD-AADI-01 11 9446761 9446761 A C IPO7 Missense_Mutation p.K429N 0.06 deleterious(0) probably_damaging(0.987) TCGA-DD-AADI-01 12 110437503 110437503 G A ANKRD13A Missense_Mutation p.A4T 0.10 tolerated(0.33) benign(0.001) TCGA-DD-AADI-01 12 123214615 123214615 C T HCAR1 Missense_Mutation p.G91E 0.37 tolerated(0.08) benign(0.259) TCGA-DD-AADI-01 12 133219918 133219918 T G POLE Splice_Site p.X1482_splice 0.08 TCGA-DD-AADI-01 12 46244283 46244283 C A ARID2 Missense_Mutation p.Q793K 0.28 deleterious_low_confidence(0.01) probably_damaging(0.977) TCGA-DD-AADI-01 12 4920420 4920420 C T KCNA6 Missense_Mutation p.L405F 0.18 tolerated(0.56) benign(0.438) TCGA-DD-AADI-01 12 49427679 49427679 C T KMT2D Silent p.Q3603Q 0.07 TCGA-DD-AADI-01 12 57871256 57871256 T A ARHGAP9 Missense_Mutation p.S248C 0.33 deleterious(0.01) possibly_damaging(0.532) TCGA-DD-AADI-01 12 57892224 57892224 G C MARS Missense_Mutation p.W303C 0.35 deleterious(0) probably_damaging(0.981) TCGA-DD-AADI-01 12 7055092 7055092 G T C12orf57 3'UTR 0.09 TCGA-DD-AADI-01 13 20346623 20346623 T G PSPC1 Silent p.R145R 0.11 TCGA-DD-AADI-01 13 20605572 20605572 G A ZMYM2 Nonsense_Mutation p.W655* 0.30 TCGA-DD-AADI-01 13 46161363 46161363 G A FAM194B Missense_Mutation p.P231S 0.14 tolerated(0.61) benign(0.014) TCGA-DD-AADI-01 14 21026728 21026728 C T RNASE9 5'UTR 0.06 TCGA-DD-AADI-01 14 52485928 52485928 A T NID2 Missense_Mutation p.I960N 0.30 deleterious(0) probably_damaging(0.971) TCGA-DD-AADI-01 14 86090032 86090032 G T FLRT2 3'UTR 0.19 TCGA-DD-AADI-01 15 28457604 28457604 T C HERC2 Silent p.K2304K 0.21 TCGA-DD-AADI-01 15 45554224 45554224 G A SLC28A2 Nonsense_Mutation p.W61* 0.04 TCGA-DD-AADI-01 15 74324992 74324992 C G PML Nonsense_Mutation p.S445* 0.38 TCGA-DD-AADI-01 15 74588203 74588203 A G CCDC33 Missense_Mutation p.T402A 0.09 tolerated(0.37) possibly_damaging(0.801) TCGA-DD-AADI-01 15 86791026 86791026 C T AGBL1 Silent p.C171C 0.33 TCGA-DD-AADI-01 15 89402510 89402510 A G ACAN Missense_Mutation p.T2232A 0.32 tolerated(1) benign(0.03) TCGA-DD-AADI-01 16 3077415 3077415 G A THOC6 Missense_Mutation p.G287R 0.14 deleterious(0) probably_damaging(1) TCGA-DD-AADI-01 16 364583 364613 ACAGGCTCTGCTGCTCGCTGTCGTTGGCACT - AXIN1 Frame_Shift_Del p.S317Pfs*87 0.26 TCGA-DD-AADI-01 16 68849586 68849586 G T CDH1 Nonsense_Mutation p.E497* 0.55 TCGA-DD-AADI-01 17 11778277 11778277 A T DNAH9 Silent p.P3418P 0.42 TCGA-DD-AADI-01 17 2868924 2868924 C T RAP1GAP2 Missense_Mutation p.R195W 0.08 deleterious(0) probably_damaging(0.99) TCGA-DD-AADI-01 17 48667882 48667882 C T CACNA1G Silent p.S784S 0.19 TCGA-DD-AADI-01 17 56281642 56281642 T C EPX Missense_Mutation p.I669T 0.32 tolerated(0.16) possibly_damaging(0.776) TCGA-DD-AADI-01 17 60766907 60766907 C G MRC2 Missense_Mutation p.A1120G 0.06 tolerated(0.17) benign(0.04) TCGA-DD-AADI-01 17 6331740 6331740 G A AIPL1 Silent p.C121C 0.19 TCGA-DD-AADI-01 17 73096231 73096231 T C SLC16A5 Missense_Mutation p.L158P 0.23 deleterious(0) probably_damaging(0.992) TCGA-DD-AADI-01 17 80042151 80042151 G T FASN Silent p.V1626V 0.08 TCGA-DD-AADI-01 17 8172487 8172487 G C PFAS Missense_Mutation p.A1308P 0.18 tolerated(1) benign(0.004) TCGA-DD-AADI-01 18 56034978 56034978 G A NEDD4L Silent p.T688T 0.10 TCGA-DD-AADI-01 19 15565556 15565556 C T RASAL3 Missense_Mutation p.G624S 0.06 deleterious(0) probably_damaging(0.974) TCGA-DD-AADI-01 19 17830385 17830385 G A MAP1S Missense_Mutation p.G25E 0.35 tolerated(0.27) possibly_damaging(0.563) TCGA-DD-AADI-01 19 21608837 21608837 G T ZNF493 3'UTR 0.03 TCGA-DD-AADI-01 19 23941653 23941653 C A ZNF681 5'UTR 0.19 TCGA-DD-AADI-01 19 38160112 38160112 A G ZNF781 Missense_Mutation p.M313T 0.08 tolerated(0.38) benign(0.042) TCGA-DD-AADI-01 19 38991591 38991591 G T RYR1 Silent p.G2525G 0.53 TCGA-DD-AADI-01 19 38993233 38993233 G A RYR1 Silent p.P2567P 0.26 TCGA-DD-AADI-01 19 41173904 41173904 T C NUMBL Silent p.Q433Q 0.28 TCGA-DD-AADI-01 19 52272249 52272249 T C FPR2 Missense_Mutation p.V113A 0.19 deleterious(0) probably_damaging(0.986) TCGA-DD-AADI-01 19 56467121 56467121 C T NLRP8 Missense_Mutation p.A566V 0.05 tolerated(0.27) benign(0.016) TCGA-DD-AADI-01 19 57909862 57909862 A T ZNF548 Silent p.S81S 0.06 TCGA-DD-AADI-01 19 6442104 6442104 C A SLC25A23 Missense_Mutation p.G430V 0.30 deleterious(0) probably_damaging(1) TCGA-DD-AADI-01 19 7075098 7075098 G T ZNF557 Missense_Mutation p.V5F 0.40 deleterious(0.02) benign(0.014) TCGA-DD-AADI-01 1 145282046 145282046 G T NOTCH2NL 3'UTR 0.07 TCGA-DD-AADI-01 1 145827047 145827047 G A GPR89A 5'UTR 0.39 TCGA-DD-AADI-01 1 152328831 152328831 A G FLG2 Silent p.S477S 0.04 TCGA-DD-AADI-01 1 153617713 153617713 A G CHTOP Missense_Mutation p.M239V 0.04 tolerated(0.08) unknown(0) TCGA-DD-AADI-01 1 155208419 155208419 C T GBA Silent p.R159R 0.09 TCGA-DD-AADI-01 1 155264423 155264423 A G PKLR Missense_Mutation p.L272P 0.41 deleterious(0.01) probably_damaging(1) TCGA-DD-AADI-01 1 158325885 158325895 CATCCATTGGG TGGGT CD1E Intron p.I299_G302delinsGC 0.15 TCGA-DD-AADI-01 1 158325895 158325896 - T CD1E Frame_Shift_Ins p.G302Vfs*25 0.16 TCGA-DD-AADI-01 1 158548821 158548821 G A OR10X1 Missense_Mutation p.P290L 0.23 deleterious(0.04) probably_damaging(0.969) TCGA-DD-AADI-01 1 176563717 176563717 G A PAPPA2 Missense_Mutation p.R326H 0.25 tolerated(0.23) benign(0.041) TCGA-DD-AADI-01 1 201839912 201839912 G A IPO9 Missense_Mutation p.G779R 0.05 deleterious(0) probably_damaging(0.984) TCGA-DD-AADI-01 1 222900566 222900566 G A BROX Missense_Mutation p.A213T 0.04 deleterious(0) probably_damaging(0.959) TCGA-DD-AADI-01 1 233394789 233394789 G C PCNXL2 Missense_Mutation p.F273L 0.19 tolerated_low_confidence(0.15) benign(0.004) TCGA-DD-AADI-01 1 247978806 247978806 C T OR14A16 Missense_Mutation p.A76T 0.10 deleterious(0) benign(0.057) TCGA-DD-AADI-01 1 31654466 31654466 G T NKAIN1 3'UTR 0.49 TCGA-DD-AADI-01 20 3306871 3306871 A G C20orf194 Silent p.C387C 0.18 TCGA-DD-AADI-01 20 43851661 43851661 A T SEMG2 Missense_Mutation p.E463V 0.08 deleterious(0.04) possibly_damaging(0.728) TCGA-DD-AADI-01 20 50158976 50158976 C T NFATC2 Silent p.G21G 0.38 TCGA-DD-AADI-01 20 57769174 57769174 A T ZNF831 Missense_Mutation p.R1034W 0.08 tolerated(0.06) possibly_damaging(0.506) TCGA-DD-AADI-01 20 60990335 60990335 C T RBBP8NL Silent p.Q212Q 0.07 TCGA-DD-AADI-01 21 11049573 11049573 A G BAGE2 RNA 0.04 TCGA-DD-AADI-01 21 33065744 33065744 T C SCAF4 Missense_Mutation p.H459R 0.32 benign(0.227) TCGA-DD-AADI-01 21 40977899 40977899 A T C21orf88 Intron 0.11 TCGA-DD-AADI-01 22 40042812 40042812 G A CACNA1I Missense_Mutation p.R463Q 0.10 deleterious(0.01) probably_damaging(0.914) TCGA-DD-AADI-01 2 107450508 107450508 C T ST6GAL2 Silent p.S346S 0.30 TCGA-DD-AADI-01 2 109964272 109964272 C A SH3RF3 Missense_Mutation p.T239K 0.08 tolerated(0.39) benign(0.027) TCGA-DD-AADI-01 2 170785285 170785285 A T UBR3 Missense_Mutation p.S825C 0.08 deleterious(0.04) probably_damaging(0.993) TCGA-DD-AADI-01 2 172930371 172930371 C T METAP1D Missense_Mutation p.R130W 0.06 deleterious(0) benign(0) TCGA-DD-AADI-01 2 197066049 197066049 T A HECW2 Missense_Mutation p.E1557D 0.26 deleterious(0.05) benign(0.277) TCGA-DD-AADI-01 2 230914607 230914607 G A SLC16A14 Silent p.G91G 0.34 TCGA-DD-AADI-01 2 236653455 236653455 G C AGAP1 Missense_Mutation p.E170D 0.18 tolerated(0.43) benign(0.003) TCGA-DD-AADI-01 2 241535793 241535793 A C CAPN10 Missense_Mutation p.T446P 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-DD-AADI-01 2 32289153 32289153 G A SPAST Missense_Mutation p.A85T 0.18 tolerated(0.55) benign(0.122) TCGA-DD-AADI-01 2 39250269 39250269 C T SOS1 Missense_Mutation p.G434R 0.30 deleterious(0.01) benign(0.347) TCGA-DD-AADI-01 2 71839841 71839841 G A DYSF Missense_Mutation p.R1431H 0.29 deleterious(0) probably_damaging(0.996) TCGA-DD-AADI-01 3 15498035 15498035 C T COLQ Missense_Mutation p.A336T 0.27 deleterious(0.05) unknown(0) TCGA-DD-AADI-01 3 156876717 156876717 T C CCNL1 Silent p.A142A 0.08 TCGA-DD-AADI-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.08 tolerated(0.11) possibly_damaging(0.529) TCGA-DD-AADI-01 3 30842571 30842571 T A GADL1 Nonsense_Mutation p.K354* 0.32 TCGA-DD-AADI-01 3 47950683 47950683 G - MAP4 Intron 0.23 TCGA-DD-AADI-01 3 50374725 50374725 A C RASSF1 Intron 0.34 TCGA-DD-AADI-01 3 57282311 57282311 C T APPL1 Silent p.D265D 0.17 TCGA-DD-AADI-01 3 97984101 97984101 G A OR5H6 Missense_Mutation p.V325I 0.30 tolerated_low_confidence(0.37) benign(0.02) TCGA-DD-AADI-01 4 103561007 103561007 T A MANBA Missense_Mutation p.Q626L 0.16 deleterious(0) possibly_damaging(0.887) TCGA-DD-AADI-01 4 106158333 106158333 C T TET2 Silent p.T1078T 0.16 TCGA-DD-AADI-01 4 106534538 106534538 C T ARHGEF38 Intron 0.20 TCGA-DD-AADI-01 4 154191666 154191666 C A TRIM2 Nonsense_Mutation p.C70* 0.64 TCGA-DD-AADI-01 4 185339806 185339806 T C IRF2 Missense_Mutation p.R82G 0.38 deleterious(0) probably_damaging(0.999) TCGA-DD-AADI-01 4 42895607 42895607 C A GRXCR1 Silent p.G108G 0.08 TCGA-DD-AADI-01 4 42964912 42964912 C A GRXCR1 Missense_Mutation p.P130T 0.37 tolerated(0.1) benign(0.154) TCGA-DD-AADI-01 4 48502062 48502062 T A FRYL Missense_Mutation p.Q2923L 0.07 tolerated(0.62) probably_damaging(0.983) TCGA-DD-AADI-01 4 52883570 52883570 A G LRRC66 Silent p.N70N 0.41 TCGA-DD-AADI-01 4 5333066 5333066 T G STK32B Missense_Mutation p.I127S 0.44 deleterious(0) possibly_damaging(0.464) TCGA-DD-AADI-01 4 6642497 6642497 G C MRFAP1 Intron 0.32 TCGA-DD-AADI-01 4 69681942 69681942 T A UGT2B10 Missense_Mutation p.S69T 0.08 deleterious(0.04) possibly_damaging(0.524) TCGA-DD-AADI-01 5 127668623 127668623 T C FBN2 Silent p.G1401G 0.28 TCGA-DD-AADI-01 5 139743132 139743132 G T SLC4A9 Silent p.R381R 0.11 TCGA-DD-AADI-01 5 149515368 149515368 C T PDGFRB Silent p.P38P 0.21 TCGA-DD-AADI-01 5 159776448 159776448 G A C1QTNF2 Silent p.Y240Y 0.10 TCGA-DD-AADI-01 5 177695729 177695729 A G COL23A1 Splice_Site p.X165_splice 0.32 TCGA-DD-AADI-01 5 5463105 5463105 A T KIAA0947 Nonsense_Mutation p.R1220* 0.30 TCGA-DD-AADI-01 5 54640445 54640445 A G SKIV2L2 Silent p.E334E 0.06 TCGA-DD-AADI-01 5 55082361 55082361 A G DDX4 Missense_Mutation p.N294D 0.27 tolerated(0.18) benign(0.007) TCGA-DD-AADI-01 6 123101529 123101529 G A FABP7 Missense_Mutation p.S56N 0.33 deleterious(0.01) benign(0.317) TCGA-DD-AADI-01 6 147646126 147646126 G A STXBP5 Missense_Mutation p.G612S 0.08 deleterious(0) probably_damaging(1) TCGA-DD-AADI-01 6 161494612 161494612 G A MAP3K4 Missense_Mutation p.A689T 0.30 tolerated(0.52) benign(0.069) TCGA-DD-AADI-01 6 25849672 25849672 C G SLC17A3 Missense_Mutation p.G431A 0.35 tolerated(0.08) probably_damaging(0.979) TCGA-DD-AADI-01 6 26032006 26032006 C T HIST1H3B Missense_Mutation p.E95K 0.36 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DD-AADI-01 6 33748859 33748859 T C LEMD2 Missense_Mutation p.I309V 0.39 tolerated(0.91) benign(0.004) TCGA-DD-AADI-01 7 107603404 107603404 A - LAMB1 Frame_Shift_Del p.I601Mfs*13 0.18 TCGA-DD-AADI-01 7 107808806 107808806 C A NRCAM Missense_Mutation p.A1077S 0.39 tolerated(0.27) benign(0.005) TCGA-DD-AADI-01 7 141540998 141540998 G A PRSS37 5'UTR 0.36 TCGA-DD-AADI-01 7 143657530 143657530 C G OR2F1 Missense_Mutation p.S156C 0.33 deleterious(0.03) probably_damaging(0.997) TCGA-DD-AADI-01 7 150778970 150778970 C G TMUB1 Missense_Mutation p.R136P 0.28 deleterious(0) possibly_damaging(0.749) TCGA-DD-AADI-01 7 150778972 150778972 G T TMUB1 Silent p.G135G 0.28 TCGA-DD-AADI-01 7 38794299 38794299 C A VPS41 Intron 0.28 TCGA-DD-AADI-01 7 55236291 55236291 C T EGFR Intron 0.30 TCGA-DD-AADI-01 7 57529086 57529086 C T ZNF716 Missense_Mutation p.R307C 0.31 tolerated(0.23) benign(0.001) TCGA-DD-AADI-01 7 63727101 63727101 T C ZNF679 Missense_Mutation p.S364P 0.29 deleterious(0.04) benign(0.004) TCGA-DD-AADI-01 7 77579094 77579094 C T PHTF2 Missense_Mutation p.L653F 0.34 deleterious(0) probably_damaging(0.999) TCGA-DD-AADI-01 8 113403006 113403006 C A CSMD3 Nonsense_Mutation p.G1941* 0.25 TCGA-DD-AADI-01 8 118174119 118174119 T A SLC30A8 Missense_Mutation p.Y239N 0.13 deleterious(0) possibly_damaging(0.71) TCGA-DD-AADI-01 8 133048665 133048665 A T OC90 Intron 0.08 TCGA-DD-AADI-01 8 139696713 139696713 C A COL22A1 Splice_Site p.X990_splice 0.24 TCGA-DD-AADI-01 8 143558497 143558497 G A BAI1 Nonsense_Mutation p.W360* 0.07 TCGA-DD-AADI-01 8 145133577 145133577 A G EXOSC4 5'UTR 0.29 TCGA-DD-AADI-01 8 1953658 1953658 C T KBTBD11 3'UTR 0.41 TCGA-DD-AADI-01 9 101570305 101570305 G A GALNT12 Missense_Mutation p.D109N 0.31 deleterious(0) probably_damaging(0.998) TCGA-DD-AADI-01 9 101597550 101597550 G A GALNT12 Missense_Mutation p.G313R 0.34 deleterious(0) probably_damaging(1) TCGA-DD-AADI-01 9 104433046 104433046 C A GRIN3A Missense_Mutation p.D550Y 0.05 deleterious(0) probably_damaging(0.91) TCGA-DD-AADI-01 9 129599962 129599962 C G ZBTB43 3'UTR 0.27 TCGA-DD-AADI-01 9 37745441 37745441 G A FRMPD1 Missense_Mutation p.G1138S 0.32 tolerated_low_confidence(0.22) benign(0.002) TCGA-DD-AADI-01 9 96864001 96864001 G A PTPDC1 Missense_Mutation p.D721N 0.16 tolerated(0.26) benign(0.2) TCGA-DD-AADI-01 X 100333929 100333929 G A TMEM35 5'UTR 0.08 TCGA-DD-AADI-01 X 105197132 105197132 G A NRK Silent p.K1541K 0.16 TCGA-DD-AADI-01 X 107863658 107863658 T C COL4A5 Splice_Site p.X893_splice 0.12 TCGA-DD-AADI-01 X 113949680 113949680 C T HTR2C Intron 0.14 TCGA-DD-AADI-01 X 118752495 118752495 A G SEPT6 3'UTR 0.22 TCGA-DD-AADI-01 X 134125479 134125479 A G SMIM10 3'UTR 0.32 TCGA-DD-AADI-01 X 134711160 134711160 C A DDX26B Missense_Mutation p.Q606K 0.17 deleterious(0.05) possibly_damaging(0.761) TCGA-DD-AADI-01 X 150891213 150891213 G A FATE1 Nonsense_Mutation p.W178* 0.38 TCGA-DD-AADI-01 X 63413266 63413266 T A AMER1 Splice_Site 0.32 TCGA-DD-AADI-01 X 71813017 71813017 C T PHKA1 Silent p.L1060L 0.41 TCGA-DD-AADJ-01 11 61090560 61090560 T C DDB1 Missense_Mutation p.I310V 0.43 tolerated(0.11) benign(0.295) TCGA-DD-AADJ-01 11 73021870 73021870 G A ARHGEF17 Silent p.E729E 0.28 TCGA-DD-AADJ-01 12 132547123 132547123 G A EP400 Silent p.Q2737Q 0.11 TCGA-DD-AADJ-01 12 31585991 31585991 A T DENND5B Intron 0.07 TCGA-DD-AADJ-01 13 95248352 95248352 G A TGDS Silent p.P13P 0.43 TCGA-DD-AADJ-01 14 105407441 105407441 T C AHNAK2 Missense_Mutation p.I4783V 0.42 benign(0.025) TCGA-DD-AADJ-01 14 105408464 105408464 T C AHNAK2 Missense_Mutation p.S4442G 0.42 benign(0.001) TCGA-DD-AADJ-01 14 53331148 53331148 G A FERMT2 Missense_Mutation p.R525C 0.46 deleterious(0.02) probably_damaging(0.991) TCGA-DD-AADJ-01 14 67826386 67826386 A - ATP6V1D Frame_Shift_Del p.S12Rfs*8 0.32 TCGA-DD-AADJ-01 14 74769602 74769602 C T ABCD4 Missense_Mutation p.G5E 0.45 tolerated_low_confidence(0.07) unknown(0) TCGA-DD-AADJ-01 14 78187159 78187159 C G SNW1 Missense_Mutation p.Q381H 0.29 tolerated(0.11) possibly_damaging(0.615) TCGA-DD-AADJ-01 14 80993294 80993294 T C CEP128 Silent p.G997G 0.31 TCGA-DD-AADJ-01 15 85165910 85165910 C T ZSCAN2 3'UTR 0.59 TCGA-DD-AADJ-01 15 89401482 89401482 C T ACAN Missense_Mutation p.S1889F 0.39 tolerated(0.06) probably_damaging(0.984) TCGA-DD-AADJ-01 16 18841439 18841439 T C SMG1 Splice_Site p.X2982_splice 0.77 TCGA-DD-AADJ-01 16 28353977 28353977 A G NPIPB6 Missense_Mutation p.L410P 0.69 deleterious_low_confidence(0) possibly_damaging(0.795) TCGA-DD-AADJ-01 16 30455651 30455651 C T SEPHS2 3'Flank 0.78 TCGA-DD-AADJ-01 16 56920380 56920380 T C SLC12A3 Missense_Mutation p.V677A 0.41 deleterious(0) possibly_damaging(0.734) TCGA-DD-AADJ-01 16 86582083 86582083 C T MTHFSD Missense_Mutation p.C113Y 0.62 tolerated(0.08) probably_damaging(0.98) TCGA-DD-AADJ-01 17 10210383 10210383 T C MYH13 Splice_Site p.X1724_splice 0.38 TCGA-DD-AADJ-01 17 1582362 1582362 C A PRPF8 Silent p.L516L 0.52 TCGA-DD-AADJ-01 17 73132073 73132073 C A HN1 3'UTR 0.18 TCGA-DD-AADJ-01 18 14851844 14851844 C A ANKRD30B Missense_Mutation p.L1182M 0.30 deleterious(0) probably_damaging(0.986) TCGA-DD-AADJ-01 19 10220893 10220893 G C PPAN Missense_Mutation p.A265P 0.41 deleterious(0.04) probably_damaging(0.999) TCGA-DD-AADJ-01 19 37618604 37618604 A C ZNF420 Missense_Mutation p.Q237H 0.28 tolerated(0.86) possibly_damaging(0.522) TCGA-DD-AADJ-01 19 41497305 41497305 C T CYP2B6 Missense_Mutation p.P32L 0.42 deleterious(0) probably_damaging(1) TCGA-DD-AADJ-01 19 44376589 44376589 G A ZNF404 3'UTR 0.32 TCGA-DD-AADJ-01 19 54080094 54080094 C A ZNF331 Missense_Mutation p.R94S 0.48 tolerated(0.6) benign(0.003) TCGA-DD-AADJ-01 1 169761971 169761971 A C METTL18 Missense_Mutation p.L289R 0.28 deleterious(0) probably_damaging(0.964) TCGA-DD-AADJ-01 1 215768702 215768702 G A KCTD3 Silent p.V274V 0.31 TCGA-DD-AADJ-01 1 215844383 215844383 T C USH2A Silent p.L4688L 0.25 TCGA-DD-AADJ-01 1 228290360 228290395 GTGGGCTGCTTCTTCACGTTCTTGTAGCCACTGCGA - C1orf35 Splice_Site p.X82_splice 0.17 TCGA-DD-AADJ-01 1 57347162 57347162 C T C8A Missense_Mutation p.A170V 0.69 deleterious(0.02) benign(0.019) TCGA-DD-AADJ-01 20 17462588 17462588 C T PCSK2 Missense_Mutation p.A597V 0.30 tolerated(0.24) possibly_damaging(0.787) TCGA-DD-AADJ-01 20 2321247 2321247 G A TGM3 3'UTR 0.42 TCGA-DD-AADJ-01 20 44538643 44538643 C T PLTP Missense_Mutation p.M89I 0.49 tolerated(0.44) benign(0.002) TCGA-DD-AADJ-01 21 41551019 41551019 A G DSCAM Missense_Mutation p.S928P 0.37 tolerated(0.1) benign(0.038) TCGA-DD-AADJ-01 22 19163611 19163611 C A SLC25A1 3'UTR 0.54 TCGA-DD-AADJ-01 22 19965537 19965537 C A ARVCF Missense_Mutation p.D548Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-DD-AADJ-01 2 155711889 155711889 G A KCNJ3 3'UTR 0.38 TCGA-DD-AADJ-01 2 168105919 168105919 T A XIRP2 Missense_Mutation p.C2673S 0.50 benign(0.038) TCGA-DD-AADJ-01 2 170371147 170371147 G A KLHL41 Missense_Mutation p.G392S 0.51 tolerated(0.39) possibly_damaging(0.684) TCGA-DD-AADJ-01 2 178098804 178098804 C A NFE2L2 Missense_Mutation p.G81C 0.44 deleterious(0) probably_damaging(1) TCGA-DD-AADJ-01 2 189434772 189434772 A G GULP1 Silent p.T178T 0.32 TCGA-DD-AADJ-01 2 216299510 216299513 ATTT - FN1 Frame_Shift_Del p.Q63Sfs*7 0.54 TCGA-DD-AADJ-01 2 220493162 220493162 A T SLC4A3 Silent p.P29P 0.43 TCGA-DD-AADJ-01 2 42557132 42557132 G A EML4 Missense_Mutation p.E911K 0.45 tolerated_low_confidence(0.55) benign(0.129) TCGA-DD-AADJ-01 3 132337613 132337613 T - ACAD11 Frame_Shift_Del p.M427Wfs*25 0.28 TCGA-DD-AADJ-01 3 173996998 173996998 G A NLGN1 Missense_Mutation p.D403N 0.42 tolerated(0.16) benign(0.004) TCGA-DD-AADJ-01 3 195512150 195512150 C A MUC4 Missense_Mutation p.D2101Y 0.13 unknown(0) TCGA-DD-AADJ-01 3 24174928 24174928 A G THRB Missense_Mutation p.I255T 0.36 tolerated(0.43) benign(0.003) TCGA-DD-AADJ-01 3 45557708 45557708 A G LARS2 Missense_Mutation p.I662V 0.35 tolerated(0.49) benign(0.004) TCGA-DD-AADJ-01 3 50403525 50403525 G A CACNA2D2 Missense_Mutation p.R934C 0.37 tolerated(0.18) possibly_damaging(0.857) TCGA-DD-AADJ-01 3 51418626 51418626 G A DOCK3 Missense_Mutation p.R1910H 0.44 tolerated_low_confidence(0.08) probably_damaging(0.998) TCGA-DD-AADJ-01 3 56674029 56674029 G T FAM208A Missense_Mutation p.L917M 0.19 deleterious(0) probably_damaging(1) TCGA-DD-AADJ-01 3 72427650 72427650 T A RYBP Silent p.A280A 0.39 TCGA-DD-AADJ-01 4 106163843 106163843 G A TET2 Intron 0.54 TCGA-DD-AADJ-01 4 5841321 5841321 G T CRMP1 Missense_Mutation p.A413E 0.35 deleterious(0) probably_damaging(0.968) TCGA-DD-AADJ-01 4 5841322 5841322 C T CRMP1 Missense_Mutation p.A413T 0.33 deleterious(0.01) benign(0.173) TCGA-DD-AADJ-01 5 140735877 140735877 C T PCDHGA4 Silent p.N370N 0.40 TCGA-DD-AADJ-01 5 57791392 57791392 G A GAPT 3'UTR 0.32 TCGA-DD-AADJ-01 6 11104810 11104810 C T ERVFRD-1 Missense_Mutation p.G245E 0.42 deleterious(0.04) probably_damaging(0.951) TCGA-DD-AADJ-01 6 29323627 29323627 C A OR5V1 Missense_Mutation p.A116S 0.38 tolerated(0.08) possibly_damaging(0.524) TCGA-DD-AADJ-01 6 31855974 31855974 A - EHMT2 Frame_Shift_Del p.M530Rfs*17 0.31 TCGA-DD-AADJ-01 6 33271973 33271973 T C TAPBP Missense_Mutation p.E411G 0.46 deleterious(0) probably_damaging(0.999) TCGA-DD-AADJ-01 6 36930828 36930828 C A PI16 Missense_Mutation p.A237E 0.48 deleterious(0.01) possibly_damaging(0.691) TCGA-DD-AADJ-01 6 41751951 41751951 A T PRICKLE4 Missense_Mutation p.Q72L 0.45 deleterious(0.01) possibly_damaging(0.527) TCGA-DD-AADJ-01 6 52141926 52141940 GGTGGGGATAGCTCG - MCM3 In_Frame_Del p.R409_T413del 0.19 TCGA-DD-AADJ-01 6 56480983 56480983 T - DST Intron 0.26 TCGA-DD-AADJ-01 6 56911480 56911480 G T KIAA1586 5'UTR 0.46 TCGA-DD-AADJ-01 7 117824204 117824204 G A NAA38 5'UTR 0.38 TCGA-DD-AADJ-01 7 146829391 146829391 G A CNTNAP2 Missense_Mutation p.A380T 0.34 tolerated(0.07) benign(0.028) TCGA-DD-AADJ-01 7 6369342 6369342 C A FAM220A 3'UTR 0.35 TCGA-DD-AADJ-01 7 87074258 87074258 C T ABCB4 Missense_Mutation p.V347I 0.44 tolerated(0.91) benign(0.003) TCGA-DD-AADJ-01 7 92731597 92731597 C A SAMD9 Missense_Mutation p.D1272Y 0.38 deleterious(0.01) probably_damaging(0.947) TCGA-DD-AADJ-01 7 94297113 94297113 G A PEG10 3'UTR 0.39 TCGA-DD-AADJ-01 8 20112506 20112506 C T LZTS1 Missense_Mutation p.E63K 0.44 deleterious(0.03) probably_damaging(0.991) TCGA-DD-AADJ-01 8 37611633 37611633 A - ERLIN2 Frame_Shift_Del 0.28 TCGA-DD-AADJ-01 9 133799154 133799154 G T FIBCD1 Missense_Mutation p.R276S 0.34 tolerated(0.81) benign(0.003) TCGA-DD-AADJ-01 9 136444248 136444248 G A FAM163B Silent p.L133L 0.36 TCGA-DD-AADJ-01 9 139744507 139744507 G T PHPT1 Missense_Mutation p.G68V 0.36 deleterious(0.02) probably_damaging(0.994) TCGA-DD-AADJ-01 9 19786033 19786033 C T SLC24A2 Missense_Mutation p.V278I 0.39 tolerated(1) benign(0.005) TCGA-DD-AADJ-01 9 32430520 32430520 A T ACO1 Silent p.I558I 0.46 TCGA-DD-AADJ-01 9 88272416 88272416 G A AGTPBP1 Silent p.N281N 0.53 TCGA-DD-AADJ-01 X 104984619 104984619 A T IL1RAPL2 Missense_Mutation p.N328I 0.42 deleterious(0) probably_damaging(1) TCGA-DD-AADJ-01 X 118699267 118699267 C A CXorf56 Nonsense_Mutation p.E18* 0.35 TCGA-DD-AADJ-01 X 135741541 135741541 T C CD40LG Silent p.T251T 0.38 TCGA-DD-AADJ-01 X 47445002 47445002 G T TIMP1 Missense_Mutation p.S130I 0.42 deleterious(0.01) possibly_damaging(0.844) TCGA-DD-AADJ-01 X 48759212 48759212 T G PQBP1 Missense_Mutation p.L62R 0.26 tolerated(0.96) possibly_damaging(0.705) TCGA-DD-AADJ-01 X 49072969 49072969 G C CACNA1F Missense_Mutation p.P1048A 0.37 deleterious(0.04) benign(0.026) TCGA-DD-AADK-01 10 123976336 123976336 C T TACC2 Silent p.P2513P 0.04 TCGA-DD-AADK-01 11 119031798 119031798 G T ABCG4 Silent p.R641R 0.16 TCGA-DD-AADK-01 11 27018205 27018205 T A FIBIN 3'UTR 0.17 TCGA-DD-AADK-01 11 27114762 27114762 G A BBOX1 Missense_Mutation p.E128K 0.21 tolerated(0.11) benign(0.004) TCGA-DD-AADK-01 11 281308 281308 G A NLRP6 Missense_Mutation p.G525D 0.24 tolerated(0.76) benign(0.025) TCGA-DD-AADK-01 11 73687988 73687988 C A UCP2 Missense_Mutation p.D138Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-DD-AADK-01 12 110029107 110029107 G A MVK Missense_Mutation p.R277H 0.11 tolerated(0.06) benign(0.002) TCGA-DD-AADK-01 12 51773494 51773494 G A GALNT6 Silent p.L24L 0.24 TCGA-DD-AADK-01 12 55524551 55524551 T C OR9K2 Silent p.I333I 0.16 TCGA-DD-AADK-01 12 56532051 56532051 G A ESYT1 Missense_Mutation p.E788K 0.12 deleterious(0.02) benign(0.046) TCGA-DD-AADK-01 12 57627403 57627403 A G SHMT2 Missense_Mutation p.M361V 0.14 deleterious(0.02) possibly_damaging(0.457) TCGA-DD-AADK-01 13 50207062 50207062 A G ARL11 3'UTR 0.20 TCGA-DD-AADK-01 14 58938977 58938977 G A KIAA0586 Missense_Mutation p.E925K 0.16 deleterious(0.02) possibly_damaging(0.779) TCGA-DD-AADK-01 15 43038338 43038338 A T TTBK2 Missense_Mutation p.S1130R 0.23 tolerated_low_confidence(0.09) benign(0.227) TCGA-DD-AADK-01 15 88420059 88420059 A G NTRK3 3'UTR 0.21 TCGA-DD-AADK-01 16 14041917 14041917 C T ERCC4 Nonsense_Mutation p.Q822* 0.26 TCGA-DD-AADK-01 17 29120592 29120592 G C CRLF3 Missense_Mutation p.F234L 0.06 tolerated(0.07) probably_damaging(0.987) TCGA-DD-AADK-01 17 62125306 62125306 G T ERN1 Missense_Mutation p.A814E 0.05 deleterious(0.03) benign(0.131) TCGA-DD-AADK-01 17 78269372 78269372 T C RNF213 Missense_Mutation p.W591R 0.10 probably_damaging(0.963) TCGA-DD-AADK-01 18 33607210 33607210 G A RPRD1A Missense_Mutation p.H184Y 0.22 deleterious(0) benign(0.296) TCGA-DD-AADK-01 18 5423479 5423479 G A EPB41L3 Nonsense_Mutation p.Q413* 0.19 TCGA-DD-AADK-01 19 37367954 37367954 A G ZNF345 Silent p.V74V 0.20 TCGA-DD-AADK-01 19 39966766 39966766 A G SUPT5H Missense_Mutation p.S1024G 0.27 deleterious(0.02) benign(0.23) TCGA-DD-AADK-01 19 54177497 54177497 G T MIR498 RNA 0.17 TCGA-DD-AADK-01 1 103471625 103471625 T C COL11A1 Missense_Mutation p.K597R 0.17 unknown(0) TCGA-DD-AADK-01 1 11184573 11184573 G T MTOR Missense_Mutation p.S2215Y 0.14 deleterious(0) possibly_damaging(0.77) TCGA-DD-AADK-01 1 116194093 116194093 C A VANGL1 Missense_Mutation p.S20Y 0.27 deleterious(0) possibly_damaging(0.739) TCGA-DD-AADK-01 1 151105786 151105786 C T SEMA6C Missense_Mutation p.R688Q 0.17 deleterious(0) benign(0.417) TCGA-DD-AADK-01 1 151262451 151262451 T A ZNF687 Missense_Mutation p.Y978N 0.16 deleterious(0) probably_damaging(1) TCGA-DD-AADK-01 1 153924613 153924613 G A CRTC2 Missense_Mutation p.P293L 0.34 tolerated(0.05) benign(0.43) TCGA-DD-AADK-01 1 167097157 167097157 A G DUSP27 Missense_Mutation p.E930G 0.08 deleterious(0) possibly_damaging(0.728) TCGA-DD-AADK-01 1 171086300 171086302 CTT - FMO3 In_Frame_Del p.F440del 0.09 TCGA-DD-AADK-01 1 171121159 171121159 T C FMO6P Missense_Mutation p.F313S 0.19 deleterious(0) probably_damaging(1) TCGA-DD-AADK-01 1 186863272 186863272 G A PLA2G4A Missense_Mutation p.G103R 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-DD-AADK-01 1 202318209 202318209 T - PPP1R12B Frame_Shift_Del p.L78Wfs*15 0.12 TCGA-DD-AADK-01 1 205027173 205027173 C T CNTN2 Silent p.A65A 0.48 TCGA-DD-AADK-01 1 206821451 206821451 A T DYRK3 Missense_Mutation p.K303M 0.16 deleterious(0) probably_damaging(0.996) TCGA-DD-AADK-01 1 207700235 207700235 C A CR1 Missense_Mutation p.P342T 0.13 tolerated(0.21) possibly_damaging(0.714) TCGA-DD-AADK-01 1 39748722 39748722 A G MACF1 Intron 0.23 TCGA-DD-AADK-01 1 42865094 42865094 G A RIMKLA Silent p.K61K 0.16 TCGA-DD-AADK-01 20 20351356 20351356 G C INSM1 3'UTR 0.26 TCGA-DD-AADK-01 20 333968 333968 G A NRSN2 Missense_Mutation p.D102N 0.22 deleterious(0) probably_damaging(0.988) TCGA-DD-AADK-01 20 48553085 48553085 C T RNF114 Missense_Mutation p.H46Y 0.05 deleterious(0.01) possibly_damaging(0.69) TCGA-DD-AADK-01 20 58467458 58467458 T C SYCP2 Missense_Mutation p.T651A 0.23 tolerated(0.54) benign(0.009) TCGA-DD-AADK-01 21 34133432 34133432 G T PAXBP1 Missense_Mutation p.Q305K 0.07 deleterious(0.04) possibly_damaging(0.632) TCGA-DD-AADK-01 21 40762853 40762853 A - WRB Intron 0.13 TCGA-DD-AADK-01 22 46614190 46614190 C G PPARA Missense_Mutation p.L134V 0.18 deleterious(0) probably_damaging(0.997) TCGA-DD-AADK-01 2 118579226 118579226 G T DDX18 Missense_Mutation p.R217S 0.19 deleterious(0.01) possibly_damaging(0.558) TCGA-DD-AADK-01 2 20647230 20647230 G T RHOB Missense_Mutation p.A2S 0.18 tolerated(0.22) benign(0.075) TCGA-DD-AADK-01 2 20871186 20871186 C T GDF7 3'UTR 0.04 TCGA-DD-AADK-01 2 232577602 232577602 G A PTMA 3'UTR 0.09 TCGA-DD-AADK-01 2 30993223 30993223 T C CAPN13 Silent p.Q160Q 0.18 TCGA-DD-AADK-01 2 48602537 48602537 A C FOXN2 Silent p.L417L 0.12 TCGA-DD-AADK-01 2 61333780 61333780 A G KIAA1841 Missense_Mutation p.T532A 0.12 tolerated(0.74) benign(0.002) TCGA-DD-AADK-01 2 95943741 95943741 A G PROM2 Missense_Mutation p.M347V 0.26 deleterious(0.02) benign(0.208) TCGA-DD-AADK-01 3 138478043 138478043 C A PIK3CB Missense_Mutation p.R48L 0.21 tolerated(0.23) benign(0.202) TCGA-DD-AADK-01 3 197431443 197431443 C T KIAA0226 Missense_Mutation p.D145N 0.14 tolerated(0.7) benign(0.013) TCGA-DD-AADK-01 3 47155365 47155365 C T SETD2 Splice_Site p.X1572_splice 0.25 TCGA-DD-AADK-01 4 100140373 100140373 T C ADH6 5'UTR 0.28 TCGA-DD-AADK-01 4 83294718 83294718 C T HNRNPD Silent p.A38A 0.07 TCGA-DD-AADK-01 5 179228997 179228997 G - MGAT4B Frame_Shift_Del p.L39Sfs*2 0.25 TCGA-DD-AADK-01 5 32403465 32403465 G A ZFR Missense_Mutation p.P421L 0.13 deleterious(0) unknown(0) TCGA-DD-AADK-01 5 90106600 90106600 G A GPR98 Missense_Mutation p.V5175M 0.14 benign(0) TCGA-DD-AADK-01 6 26056141 26056141 C G HIST1H1C Missense_Mutation p.K172N 0.19 deleterious(0.01) unknown(0) TCGA-DD-AADK-01 7 105925452 105925452 A G NAMPT 5'UTR 0.14 TCGA-DD-AADK-01 7 139791663 139791663 A C KDM7A Missense_Mutation p.L891R 0.18 deleterious(0) probably_damaging(0.999) TCGA-DD-AADK-01 7 142334833 142334833 T C TRBV20-1 Silent p.H85H 0.25 TCGA-DD-AADK-01 7 157046730 157046730 A G UBE3C Missense_Mutation p.Y926C 0.16 deleterious(0) probably_damaging(0.999) TCGA-DD-AADK-01 7 16900171 16900171 C G AGR3 Missense_Mutation p.R135T 0.20 deleterious(0.02) benign(0.32) TCGA-DD-AADK-01 7 42085105 42085105 G C GLI3 Missense_Mutation p.A235G 0.09 deleterious(0.03) probably_damaging(0.997) TCGA-DD-AADK-01 7 42949496 42949496 T G C7orf25 Missense_Mutation p.N393T 0.16 tolerated(0.7) benign(0.001) TCGA-DD-AADK-01 7 45614382 45614407 GCTGGGCGCGCCGGGGCCCGCGCCCG - ADCY1 Frame_Shift_Del p.L81Pfs*147 0.15 TCGA-DD-AADK-01 7 48141467 48141467 G A UPP1 Missense_Mutation p.R70K 0.05 tolerated(0.94) benign(0.002) TCGA-DD-AADK-01 7 64864806 64864806 T G ZNF92 3'UTR 0.17 TCGA-DD-AADK-01 8 103282405 103282405 A G UBR5 Silent p.F2364F 0.03 TCGA-DD-AADK-01 8 142446122 142446122 A T PTP4A3 3'Flank 0.45 TCGA-DD-AADK-01 8 69020463 69020463 T A PREX2 Silent p.V945V 0.09 TCGA-DD-AADK-01 9 115760613 115760613 T A ZNF883 RNA 0.20 TCGA-DD-AADK-01 X 130417074 130417074 C A IGSF1 Nonsense_Mutation p.E278* 0.05 TCGA-DD-AADK-01 X 135427007 135427007 A G GPR112 Missense_Mutation p.K381R 0.19 deleterious(0.04) benign(0.024) TCGA-DD-AADK-01 X 16836781 16836782 - T TXLNG Frame_Shift_Ins p.L64Sfs*13 0.14 TCGA-DD-AADK-01 X 21875452 21875452 G T YY2 Missense_Mutation p.V284L 0.22 deleterious(0) possibly_damaging(0.807) TCGA-DD-AADK-01 X 34148744 34148744 C T FAM47A Missense_Mutation p.R551H 0.05 tolerated(0.08) probably_damaging(0.923) TCGA-DD-AADK-01 X 48163740 48163740 C A SSX9 RNA 0.19 TCGA-DD-AADK-01 X 48840243 48840243 G T GRIPAP1 Missense_Mutation p.Q406K 0.19 probably_damaging(0.948) TCGA-DD-AADK-01 X 54949797 54949797 C A TRO Missense_Mutation p.L278I 0.21 deleterious_low_confidence(0.01) unknown(0) TCGA-DD-AADL-01 10 102988325 102988325 G A LBX1 Missense_Mutation p.S83L 0.73 deleterious(0) probably_damaging(0.932) TCGA-DD-AADL-01 10 103898443 103898443 A G PPRC1 Missense_Mutation p.N137S 0.62 tolerated(0.23) probably_damaging(0.97) TCGA-DD-AADL-01 10 115922915 115922915 A G C10orf118 Missense_Mutation p.L38S 0.64 deleterious_low_confidence(0.02) possibly_damaging(0.553) TCGA-DD-AADL-01 10 49917835 49917835 A C WDFY4 Missense_Mutation p.N20H 0.50 tolerated_low_confidence(0.08) benign(0.006) TCGA-DD-AADL-01 10 74992895 74992895 G T FAM149B1 Silent p.V442V 0.07 TCGA-DD-AADL-01 11 120319893 120319894 - GGAG ARHGEF12 Frame_Shift_Ins p.P607Efs*6 0.42 TCGA-DD-AADL-01 11 17118722 17118722 G A PIK3C2A Missense_Mutation p.S1403F 0.56 deleterious(0) probably_damaging(0.971) TCGA-DD-AADL-01 11 180291 180291 G T RP11-304M2.3 Intron 0.23 TCGA-DD-AADL-01 11 33689596 33689596 G T KIAA1549L Missense_Mutation p.A1816S 0.53 deleterious(0.03) benign(0.199) TCGA-DD-AADL-01 11 46726573 46726573 G T ZNF408 Missense_Mutation p.Q441H 0.34 tolerated(0.1) probably_damaging(0.999) TCGA-DD-AADL-01 11 55038154 55038154 G T TRIM48 3'UTR 0.22 TCGA-DD-AADL-01 11 64880286 64880286 G C TM7SF2 Missense_Mutation p.A85P 0.03 tolerated(0.09) possibly_damaging(0.811) TCGA-DD-AADL-01 11 65367010 65367010 C A MAP3K11 Silent p.P687P 0.28 TCGA-DD-AADL-01 11 68029831 68029831 G A C11orf24 Missense_Mutation p.A211V 0.30 tolerated(0.12) possibly_damaging(0.866) TCGA-DD-AADL-01 11 68029832 68029832 C A C11orf24 Missense_Mutation p.A211S 0.31 tolerated(0.1) possibly_damaging(0.866) TCGA-DD-AADL-01 11 71146549 71146549 T C DHCR7 Missense_Mutation p.I434V 0.24 tolerated(0.44) benign(0.014) TCGA-DD-AADL-01 11 74915600 74915600 A G SLCO2B1 Missense_Mutation p.K702R 0.19 tolerated_low_confidence(0.2) benign(0.025) TCGA-DD-AADL-01 11 76372365 76372365 C A LRRC32 Missense_Mutation p.G91V 0.21 deleterious(0) probably_damaging(0.925) TCGA-DD-AADL-01 11 99942502 99942502 G T CNTN5 Missense_Mutation p.M455I 0.44 tolerated(0.07) probably_damaging(0.976) TCGA-DD-AADL-01 12 108128174 108128174 A G PRDM4 Missense_Mutation p.L740P 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-DD-AADL-01 12 111345151 111345151 C A CCDC63 Missense_Mutation p.D521E 0.45 tolerated(0.07) benign(0.088) TCGA-DD-AADL-01 12 22837867 22837901 TGCATTAAAAGTGCCTGAGTAAAGAAGAGATTTAA - ETNK1 Missense_Mutation 0.26 TCGA-DD-AADL-01 12 31815050 31815050 A T METTL20 Missense_Mutation p.T55S 0.43 deleterious(0.01) possibly_damaging(0.888) TCGA-DD-AADL-01 12 52911408 52911408 C A KRT5 Missense_Mutation p.S353I 0.22 deleterious(0) probably_damaging(0.995) TCGA-DD-AADL-01 12 56510379 56510379 G A RPL41 5'UTR 0.43 TCGA-DD-AADL-01 12 58217408 58217408 G T CTDSP2 Missense_Mutation p.L265I 0.13 deleterious(0.01) possibly_damaging(0.695) TCGA-DD-AADL-01 12 6566826 6566838 ACTATACAGGACG - TAPBPL Frame_Shift_Del p.T274Rfs*31 0.36 TCGA-DD-AADL-01 12 66531658 66531658 A G TMBIM4 3'UTR 0.41 TCGA-DD-AADL-01 12 6837158 6837158 G T COPS7A Missense_Mutation p.D77Y 0.49 deleterious(0) probably_damaging(0.988) TCGA-DD-AADL-01 12 86230106 86230106 C A RASSF9 5'UTR 0.60 TCGA-DD-AADL-01 12 91450006 91450006 A G KERA Missense_Mutation p.V18A 0.07 tolerated(0.32) benign(0) TCGA-DD-AADL-01 13 22069447 22069447 C T MICU2 Silent p.K351K 0.27 TCGA-DD-AADL-01 13 26594099 26594100 - A ATP8A2 Frame_Shift_Ins p.K1184Efs*12 0.19 TCGA-DD-AADL-01 13 28543173 28543173 C A CDX2 5'UTR 0.44 TCGA-DD-AADL-01 13 30341820 30341820 G A UBL3 Missense_Mutation p.P79L 0.06 tolerated(0.13) probably_damaging(0.927) TCGA-DD-AADL-01 13 37007255 37007255 C G CCNA1 Missense_Mutation p.A65G 0.73 tolerated(0.16) benign(0.004) TCGA-DD-AADL-01 13 37679379 37679379 G T CSNK1A1L Missense_Mutation p.S5R 0.67 tolerated_low_confidence(0.11) benign(0.37) TCGA-DD-AADL-01 13 78475302 78475302 T C EDNRB Missense_Mutation p.Y371C 0.43 deleterious(0) possibly_damaging(0.851) TCGA-DD-AADL-01 14 23895186 23895186 C A MYH7 Missense_Mutation p.D717Y 0.37 deleterious(0) probably_damaging(0.995) TCGA-DD-AADL-01 14 29236691 29236691 C A FOXG1 Missense_Mutation p.P69Q 0.04 tolerated_low_confidence(0.1) unknown(0) TCGA-DD-AADL-01 14 68256275 68256275 C T ZFYVE26 Silent p.L932L 0.75 TCGA-DD-AADL-01 14 69256756 69256756 G A ZFP36L1 Missense_Mutation p.P171S 0.69 deleterious(0.01) probably_damaging(1) TCGA-DD-AADL-01 14 86094241 86094241 T A FLRT2 3'UTR 0.57 TCGA-DD-AADL-01 15 71341955 71341955 T C LRRC49 3'UTR 0.40 TCGA-DD-AADL-01 15 91424928 91424928 C T FURIN Silent p.V735V 0.43 TCGA-DD-AADL-01 16 2112588 2112588 G T TSC2 Nonsense_Mutation p.E450* 0.74 TCGA-DD-AADL-01 16 29889696 29889696 C A SEZ6L2 Missense_Mutation p.D542Y 0.83 deleterious(0) probably_damaging(0.983) TCGA-DD-AADL-01 16 30735749 30735749 T C SRCAP Silent p.V1668V 0.79 TCGA-DD-AADL-01 16 30990708 30990708 C T SETD1A Missense_Mutation p.R1201W 0.76 unknown(0) TCGA-DD-AADL-01 16 47497889 47497889 G A PHKB Intron 0.29 TCGA-DD-AADL-01 16 84779047 84779047 A G USP10 Silent p.A320A 0.72 TCGA-DD-AADL-01 17 11593003 11593003 C T DNAH9 Silent p.D1288D 0.85 TCGA-DD-AADL-01 17 42427830 42427830 G A GRN Silent p.R161R 0.30 TCGA-DD-AADL-01 17 43922595 43922595 G A SPPL2C Nonsense_Mutation p.W108* 0.40 TCGA-DD-AADL-01 17 7578235 7578235 T C TP53 Missense_Mutation p.Y205C 0.69 deleterious(0) probably_damaging(0.99) TCGA-DD-AADL-01 18 14748314 14748314 G T ANKRD30B 5'UTR 0.39 TCGA-DD-AADL-01 18 2763754 2763754 A G SMCHD1 Silent p.E1562E 0.39 TCGA-DD-AADL-01 18 44560876 44560876 A G TCEB3B Missense_Mutation p.C254R 0.41 tolerated(0.17) benign(0.024) TCGA-DD-AADL-01 19 16988394 16988394 G C SIN3B Missense_Mutation p.E998D 0.36 tolerated(0.78) benign(0.006) TCGA-DD-AADL-01 19 17396553 17396553 G T ANKLE1 Missense_Mutation p.V534L 0.35 deleterious(0.04) benign(0.081) TCGA-DD-AADL-01 19 22846902 22846902 A G ZNF492 Missense_Mutation p.K144R 0.40 tolerated(0.06) probably_damaging(0.982) TCGA-DD-AADL-01 19 35632088 35632088 C T FXYD1 Silent p.I49I 0.25 TCGA-DD-AADL-01 19 39798880 39798880 A T LRFN1 Missense_Mutation p.V570D 0.42 tolerated(0.34) benign(0.096) TCGA-DD-AADL-01 19 41026029 41026029 C T SPTBN4 Missense_Mutation p.R1209C 0.33 deleterious(0.04) possibly_damaging(0.818) TCGA-DD-AADL-01 19 42314898 42314898 C G CEACAM3 Missense_Mutation p.P219R 0.46 deleterious(0) benign(0.02) TCGA-DD-AADL-01 19 48389503 48389503 A G SULT2A1 Silent p.D4D 0.50 TCGA-DD-AADL-01 19 50063276 50063291 GGGTCCCATAGCCCGA - NOSIP Frame_Shift_Del p.S26Rfs*5 0.27 TCGA-DD-AADL-01 19 50760598 50760598 A T MYH14 Missense_Mutation p.D696V 0.35 deleterious(0.01) benign(0.444) TCGA-DD-AADL-01 19 55451284 55451284 C A NLRP7 Silent p.T301T 0.05 TCGA-DD-AADL-01 19 58199257 58199257 A G ZNF551 Silent p.K538K 0.39 TCGA-DD-AADL-01 19 6730371 6730371 T C GPR108 Silent p.E528E 0.33 TCGA-DD-AADL-01 19 7806112 7806112 C T CD209 3'UTR 0.19 TCGA-DD-AADL-01 1 13497676 13497676 C T PRAMEF16 Silent p.L325L 0.25 TCGA-DD-AADL-01 1 152280666 152280666 C A FLG Silent p.G2232G 0.33 TCGA-DD-AADL-01 1 152280667 152280667 C A FLG Missense_Mutation p.G2232V 0.32 probably_damaging(0.988) TCGA-DD-AADL-01 1 152733917 152733917 C T KPRP 3'UTR 0.36 TCGA-DD-AADL-01 1 154033101 154033101 A G NUP210L Missense_Mutation p.V922A 0.35 tolerated(0.75) benign(0.354) TCGA-DD-AADL-01 1 158576492 158576492 G T OR10Z1 Silent p.G88G 0.39 TCGA-DD-AADL-01 1 171083272 171083272 T C FMO3 Missense_Mutation p.I318T 0.36 tolerated(0.58) benign(0.003) TCGA-DD-AADL-01 1 171083276 171083276 T G FMO3 Missense_Mutation p.F319L 0.36 tolerated(0.16) possibly_damaging(0.669) TCGA-DD-AADL-01 1 203055032 203055032 C A MYOG Nonsense_Mutation p.E20* 0.39 TCGA-DD-AADL-01 1 220970004 220970004 G A MARC1 Missense_Mutation p.E157K 0.35 tolerated(0.37) benign(0.014) TCGA-DD-AADL-01 1 227239662 227239662 C A CDC42BPA Intron 0.43 TCGA-DD-AADL-01 1 228556439 228556439 T C OBSCN Missense_Mutation p.M7552T 0.38 possibly_damaging(0.884) TCGA-DD-AADL-01 1 248039454 248039454 C A TRIM58 Missense_Mutation p.P375Q 0.52 tolerated(0.33) possibly_damaging(0.566) TCGA-DD-AADL-01 1 248202072 248202072 G A OR2L2 Missense_Mutation p.C168Y 0.39 deleterious(0) possibly_damaging(0.739) TCGA-DD-AADL-01 1 29391656 29391656 C A EPB41 Missense_Mutation p.P724T 0.39 deleterious(0.03) probably_damaging(0.999) TCGA-DD-AADL-01 1 34190962 34190962 G A CSMD2 Missense_Mutation p.L855F 0.17 deleterious(0) possibly_damaging(0.579) TCGA-DD-AADL-01 1 34204803 34204803 G T CSMD2 Missense_Mutation p.T729N 0.36 deleterious(0.01) possibly_damaging(0.719) TCGA-DD-AADL-01 1 47606518 47606518 T G CYP4A22 Missense_Mutation p.Y88D 0.36 tolerated(0.2) benign(0.04) TCGA-DD-AADL-01 1 62953084 62953084 C A DOCK7 Splice_Site p.X1801_splice 0.05 TCGA-DD-AADL-01 1 63070335 63070335 A C ANGPTL3 Missense_Mutation p.E410D 0.31 tolerated(0.44) benign(0.095) TCGA-DD-AADL-01 1 63070357 63070357 A G ANGPTL3 Missense_Mutation p.N418D 0.24 tolerated(0.22) benign(0.167) TCGA-DD-AADL-01 1 63070362 63070362 A G ANGPTL3 Silent p.K419K 0.25 TCGA-DD-AADL-01 1 67436507 67436507 T A MIER1 Missense_Mutation p.D263E 0.41 deleterious(0) probably_damaging(0.999) TCGA-DD-AADL-01 1 71546699 71546699 C T ZRANB2 5'UTR 0.28 TCGA-DD-AADL-01 1 90401939 90401939 G T LRRC8D 3'UTR 0.43 TCGA-DD-AADL-01 1 9775778 9775778 C A PIK3CD Missense_Mutation p.D107E 0.44 deleterious(0.01) possibly_damaging(0.5) TCGA-DD-AADL-01 20 23334667 23334667 A G NXT1 5'UTR 0.48 TCGA-DD-AADL-01 20 23433401 23433401 T C CST11 Silent p.L16L 0.46 TCGA-DD-AADL-01 20 35507490 35507490 T A TLDC2 Missense_Mutation p.L79Q 0.36 deleterious(0) probably_damaging(1) TCGA-DD-AADL-01 20 43850459 43850459 T C SEMG2 Silent p.S62S 0.12 TCGA-DD-AADL-01 20 57767217 57767217 G A ZNF831 Silent p.P381P 0.41 TCGA-DD-AADL-01 20 61593986 61593986 A T SLC17A9 Missense_Mutation p.T170S 0.07 deleterious(0.03) benign(0.314) TCGA-DD-AADL-01 20 61943276 61943276 G C COL20A1 Missense_Mutation p.A558P 0.05 tolerated(0.42) benign(0.008) TCGA-DD-AADL-01 22 21982898 21982898 G A YDJC Missense_Mutation p.P261S 0.38 deleterious(0.01) probably_damaging(0.99) TCGA-DD-AADL-01 22 27021475 27021475 A C CRYBA4 Missense_Mutation p.Q63H 0.40 tolerated(0.1) benign(0.03) TCGA-DD-AADL-01 2 125530441 125530441 C T CNTNAP5 Missense_Mutation p.P866S 0.13 tolerated(0.25) benign(0.107) TCGA-DD-AADL-01 2 131520209 131520209 G A AMER3 Silent p.G188G 0.36 TCGA-DD-AADL-01 2 135743849 135743849 T C MAP3K19 Missense_Mutation p.N865D 0.24 tolerated(0.67) benign(0.014) TCGA-DD-AADL-01 2 168107365 168107365 C T XIRP2 Missense_Mutation p.P3155S 0.43 benign(0.109) TCGA-DD-AADL-01 2 179434324 179434324 A T TTN Missense_Mutation p.L25512H 0.56 TCGA-DD-AADL-01 2 20173444 20173447 CATG - WDR35 Frame_Shift_Del p.M254Tfs*2 0.37 TCGA-DD-AADL-01 2 209110051 209110051 T G IDH1 Missense_Mutation p.N171T 0.24 tolerated_low_confidence(0.09) benign(0.006) TCGA-DD-AADL-01 2 220096992 220096992 A G ANKZF1 Missense_Mutation p.Y91C 0.53 deleterious(0) probably_damaging(0.998) TCGA-DD-AADL-01 2 220471465 220471465 G A STK11IP Missense_Mutation p.G351D 0.33 tolerated(0.05) benign(0.281) TCGA-DD-AADL-01 2 80101354 80101354 A T CTNNA2 Missense_Mutation p.Q246H 0.10 deleterious(0) probably_damaging(0.939) TCGA-DD-AADL-01 2 80529914 80529914 C A LRRTM1 Missense_Mutation p.S344I 0.29 deleterious(0) benign(0.128) TCGA-DD-AADL-01 2 84880999 84880999 G A DNAH6 Splice_Site p.X1878_splice 0.40 TCGA-DD-AADL-01 2 97881195 97881195 A G ANKRD36 Missense_Mutation p.I1212V 0.23 tolerated(0.12) possibly_damaging(0.842) TCGA-DD-AADL-01 3 119911830 119911830 G A GPR156 Nonsense_Mutation p.R144* 0.12 TCGA-DD-AADL-01 3 121168168 121168168 A T POLQ Missense_Mutation p.Y2420N 0.44 deleterious(0) probably_damaging(1) TCGA-DD-AADL-01 3 122160952 122160952 T C KPNA1 Missense_Mutation p.Y310C 0.41 tolerated(0.15) probably_damaging(0.918) TCGA-DD-AADL-01 3 122447347 122447347 A G PARP14 Missense_Mutation p.Y1770C 0.42 deleterious(0) probably_damaging(0.997) TCGA-DD-AADL-01 3 122658315 122658315 T C SEMA5B Missense_Mutation p.N198S 0.35 deleterious(0) probably_damaging(0.999) TCGA-DD-AADL-01 3 182554178 182554178 T A ATP11B Missense_Mutation p.L158M 0.36 tolerated(0.1) probably_damaging(0.994) TCGA-DD-AADL-01 3 183955168 183955168 G A VWA5B2 Missense_Mutation p.R563K 0.54 tolerated(0.2) benign(0.003) TCGA-DD-AADL-01 3 44434442 44434442 C G TCAIM Missense_Mutation p.S223C 0.33 tolerated(1) benign(0.001) TCGA-DD-AADL-01 3 48463572 48463572 A T PLXNB1 Missense_Mutation p.C488S 0.37 deleterious(0) probably_damaging(0.999) TCGA-DD-AADL-01 3 62860425 62860425 G C CADPS Missense_Mutation p.P94A 0.19 deleterious(0.05) unknown(0) TCGA-DD-AADL-01 4 177713482 177713482 G T VEGFC 5'UTR 0.67 TCGA-DD-AADL-01 4 20618809 20618809 G A SLIT2 Missense_Mutation p.C1375Y 0.41 deleterious(0) probably_damaging(0.996) TCGA-DD-AADL-01 4 20618810 20618810 C A SLIT2 Nonsense_Mutation p.C1375* 0.42 TCGA-DD-AADL-01 4 366828 366828 G A ZNF141 Missense_Mutation p.C201Y 0.45 deleterious(0.02) probably_damaging(0.998) TCGA-DD-AADL-01 4 81952752 81952752 C T BMP3 Missense_Mutation p.A105V 0.57 deleterious(0.01) benign(0.446) TCGA-DD-AADL-01 5 13829748 13829748 G A DNAH5 Silent p.A2105A 0.51 TCGA-DD-AADL-01 5 140022524 140022525 - CACAG TMCO6 Frame_Shift_Ins p.L237Afs*81 0.27 TCGA-DD-AADL-01 5 140229700 140229700 G A PCDHA9 Silent p.A540A 0.35 TCGA-DD-AADL-01 5 140555954 140555954 A C PCDHB7 3'UTR 0.33 TCGA-DD-AADL-01 5 140725595 140725595 C T PCDHGA3 Silent p.A665A 0.34 TCGA-DD-AADL-01 5 150923055 150923055 G T FAT2 Silent p.R2545R 0.32 TCGA-DD-AADL-01 5 159519506 159519506 C A PWWP2A Missense_Mutation p.Q717H 0.04 deleterious(0) probably_damaging(0.999) TCGA-DD-AADL-01 5 179264710 179264714 TTTCT GTTC C5orf45 Frame_Shift_Del p.R237Efs*98 0.29 TCGA-DD-AADL-01 5 31799600 31799600 C G PDZD2 Missense_Mutation p.T82S 0.40 tolerated(0.13) possibly_damaging(0.888) TCGA-DD-AADL-01 6 161455352 161455352 T A MAP3K4 Missense_Mutation p.S72T 0.26 tolerated_low_confidence(0.15) benign(0.24) TCGA-DD-AADL-01 6 29054417 29054417 A G OR2B3 Silent p.S203S 0.49 TCGA-DD-AADL-01 6 49416564 49416564 T C MUT Missense_Mutation p.E470G 0.43 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DD-AADL-01 6 49416604 49416604 T A MUT Nonsense_Mutation p.K457* 0.45 TCGA-DD-AADL-01 6 62442656 62442656 C T KHDRBS2 Missense_Mutation p.G275D 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AADL-01 7 103808951 103808951 T C ORC5 Missense_Mutation p.K283E 0.56 tolerated(0.73) benign(0) TCGA-DD-AADL-01 7 103808952 103808952 C A ORC5 Missense_Mutation p.Q282H 0.56 deleterious(0.01) probably_damaging(0.962) TCGA-DD-AADL-01 7 113518118 113518118 G T PPP1R3A Missense_Mutation p.P1010Q 0.61 deleterious(0) probably_damaging(0.972) TCGA-DD-AADL-01 7 132766712 132766712 C A CHCHD3 5'UTR 0.52 TCGA-DD-AADL-01 7 158586392 158586392 A G ESYT2 Missense_Mutation p.V226A 0.54 tolerated(0.65) benign(0.026) TCGA-DD-AADL-01 7 20698136 20698136 A G ABCB5 Missense_Mutation p.N515S 0.53 deleterious(0.04) benign(0.073) TCGA-DD-AADL-01 7 27195946 27195946 G C HOXA7 Silent p.G73G 0.30 TCGA-DD-AADL-01 7 35050137 35050137 A G DPY19L1 Missense_Mutation p.I163T 0.34 deleterious(0) probably_damaging(0.983) TCGA-DD-AADL-01 7 83640603 83640603 C A SEMA3A Missense_Mutation p.G274V 0.46 deleterious(0) probably_damaging(0.998) TCGA-DD-AADL-01 7 83640604 83640604 C A SEMA3A Nonsense_Mutation p.G274* 0.46 TCGA-DD-AADL-01 8 119391802 119391802 G A SAMD12 Nonsense_Mutation p.Q154* 0.13 TCGA-DD-AADL-01 8 126036838 126036838 T G KIAA0196 3'UTR 0.49 TCGA-DD-AADL-01 8 131896827 131896827 A G ADCY8 Missense_Mutation p.S698P 0.31 tolerated(0.42) benign(0.031) TCGA-DD-AADL-01 8 144873352 144873352 A G SCRIB Missense_Mutation p.L1650P 0.39 unknown(0) TCGA-DD-AADL-01 8 144875222 144875222 G A SCRIB Missense_Mutation p.P1314L 0.34 probably_damaging(0.999) TCGA-DD-AADL-01 8 1728755 1728755 G A CLN8 3'UTR 0.46 TCGA-DD-AADL-01 8 29989500 29989500 G T LEPROTL1 Intron 0.36 TCGA-DD-AADL-01 8 38273520 38273520 C A FGFR1 Missense_Mutation p.Q605H 0.31 deleterious(0) possibly_damaging(0.565) TCGA-DD-AADL-01 8 82644774 82644774 G T CHMP4C 5'UTR 0.52 TCGA-DD-AADL-01 9 111855825 111855825 C G TMEM245 Silent p.L282L 0.51 TCGA-DD-AADL-01 9 119461915 119461915 G T TRIM32 Missense_Mutation p.V632F 0.48 deleterious(0) probably_damaging(0.999) TCGA-DD-AADL-01 9 2123796 2123796 G A SMARCA2 Silent p.L1280L 0.07 TCGA-DD-AADL-01 9 34837661 34837661 T A FAM205B RNA 0.53 TCGA-DD-AADL-01 9 35811575 35811575 G A SPAG8 Silent p.G156G 0.43 TCGA-DD-AADL-01 9 96278439 96278439 C - FAM120A Frame_Shift_Del p.I437Sfs*79 0.32 TCGA-DD-AADL-01 X 117676789 117676789 A G DOCK11 Silent p.P68P 0.77 TCGA-DD-AADL-01 X 151818238 151818238 G C GABRQ Missense_Mutation p.W215S 0.85 deleterious(0) probably_damaging(1) TCGA-DD-AADL-01 X 153247505 153247505 C T TMEM187 5'UTR 0.80 TCGA-DD-AADL-01 X 70837372 70837372 T C CXCR3 Missense_Mutation p.I31V 0.74 tolerated_low_confidence(1) benign(0.001) TCGA-DD-AADL-01 X 74725668 74725668 G T ZDHHC15 Missense_Mutation p.P51T 0.81 tolerated(0.47) benign(0) TCGA-DD-AADL-01 X 84526085 84526085 G T ZNF711 Missense_Mutation p.G513C 0.89 deleterious(0) probably_damaging(1) TCGA-DD-AADM-01 10 103870846 103870846 G A LDB1 Missense_Mutation p.R77W 0.25 deleterious(0) probably_damaging(0.993) TCGA-DD-AADM-01 10 118084530 118084530 T C CCDC172 Silent p.L3L 0.24 TCGA-DD-AADM-01 10 129904808 129904808 C A MKI67 Nonsense_Mutation p.E1766* 0.12 TCGA-DD-AADM-01 10 16635189 16635189 T A RSU1 3'UTR 0.31 TCGA-DD-AADM-01 10 52005122 52005122 T A ASAH2 Missense_Mutation p.T74S 0.33 tolerated_low_confidence(1) benign(0.001) TCGA-DD-AADM-01 10 7822135 7822135 T C KIN Missense_Mutation p.K87R 0.30 tolerated(0.16) benign(0.081) TCGA-DD-AADM-01 11 103908514 103908514 G A DDI1 Missense_Mutation p.E322K 0.31 deleterious(0.05) benign(0.204) TCGA-DD-AADM-01 11 1081111 1081111 C T MUC2 Silent p.N469N 0.32 TCGA-DD-AADM-01 11 122774672 122774672 T C C11orf63 Silent p.Y128Y 0.11 TCGA-DD-AADM-01 11 122805414 122805414 A G C11orf63 Missense_Mutation p.N422S 0.36 tolerated(0.19) benign(0.005) TCGA-DD-AADM-01 11 16205478 16205478 A G SOX6 Missense_Mutation p.L244P 0.13 deleterious(0) possibly_damaging(0.894) TCGA-DD-AADM-01 11 19077740 19077740 G C MRGPRX2 Missense_Mutation p.S70R 0.11 deleterious(0) benign(0.216) TCGA-DD-AADM-01 11 2290974 2290974 A G ASCL2 3'UTR 0.31 TCGA-DD-AADM-01 11 2904845 2904846 - T CDKN1C 3'UTR 0.36 TCGA-DD-AADM-01 11 2906165 2906165 A G CDKN1C Silent p.A185A 0.75 TCGA-DD-AADM-01 11 56431491 56431491 T A OR5AR1 Silent p.A110A 0.18 TCGA-DD-AADM-01 11 60619888 60619888 A T PTGDR2 3'UTR 0.23 TCGA-DD-AADM-01 11 60703453 60703453 C A TMEM132A Missense_Mutation p.P717T 0.30 tolerated(0.32) probably_damaging(0.917) TCGA-DD-AADM-01 11 67166088 67166097 CCCTTGTTCT - PPP1CA Frame_Shift_Del p.K312Rfs*9 0.15 TCGA-DD-AADM-01 11 6953723 6953723 C A ZNF215 Missense_Mutation p.L74I 0.25 deleterious(0.05) benign(0.076) TCGA-DD-AADM-01 11 71806376 71806376 A G LRTOMT Intron 0.26 TCGA-DD-AADM-01 11 8017613 8017613 A T EIF3F 3'UTR 0.11 TCGA-DD-AADM-01 11 89413797 89413797 G A FOLH1B RNA 0.12 TCGA-DD-AADM-01 11 89774410 89774410 T A TRIM49C Missense_Mutation p.W351R 0.31 deleterious(0.03) benign(0.06) TCGA-DD-AADM-01 11 93171143 93171143 C T CCDC67 3'UTR 0.25 TCGA-DD-AADM-01 12 10218307 10218307 T A CLEC9A 3'UTR 0.31 TCGA-DD-AADM-01 12 102468043 102468043 T C NUP37 3'UTR 0.27 TCGA-DD-AADM-01 12 120222072 120222072 C G CIT Intron 0.40 TCGA-DD-AADM-01 12 27832561 27832561 A G PPFIBP1 Silent p.K591K 0.11 TCGA-DD-AADM-01 12 49258640 49258640 G A RND1 Missense_Mutation p.T45I 0.20 deleterious(0) possibly_damaging(0.633) TCGA-DD-AADM-01 12 49427094 49427094 G A KMT2D Silent p.P3798P 0.08 TCGA-DD-AADM-01 12 66786128 66786128 T G GRIP1 Silent p.S756S 0.12 TCGA-DD-AADM-01 12 66786129 66786129 G A GRIP1 Missense_Mutation p.S756L 0.12 deleterious(0.02) possibly_damaging(0.844) TCGA-DD-AADM-01 12 70729244 70729244 G T CNOT2 Missense_Mutation p.D226Y 0.36 deleterious(0) benign(0.186) TCGA-DD-AADM-01 12 81026036 81026036 A G PTPRQ Missense_Mutation p.I1914V 0.22 tolerated(1) benign(0.008) TCGA-DD-AADM-01 12 992147 992147 A T WNK1 Missense_Mutation p.L1137F 0.17 deleterious(0) probably_damaging(0.999) TCGA-DD-AADM-01 13 110436754 110436754 C A IRS2 Silent p.L549L 0.41 TCGA-DD-AADM-01 13 27745860 27745860 G A USP12 5'UTR 0.37 TCGA-DD-AADM-01 13 36428696 36428696 C T DCLK1 Silent p.P325P 0.12 TCGA-DD-AADM-01 13 38237691 38237691 A G TRPC4 Missense_Mutation p.L517S 0.25 deleterious(0) possibly_damaging(0.891) TCGA-DD-AADM-01 13 48936988 48936988 A - RB1 Frame_Shift_Del p.R254Gfs*10 0.12 TCGA-DD-AADM-01 13 53624870 53624870 G C OLFM4 Silent p.L499L 0.13 TCGA-DD-AADM-01 14 21544595 21544595 C T ARHGEF40 Missense_Mutation p.P606S 0.30 tolerated(0.53) benign(0.004) TCGA-DD-AADM-01 14 31058658 31058658 A G G2E3 Missense_Mutation p.I69V 0.16 deleterious(0.02) benign(0.254) TCGA-DD-AADM-01 14 35649939 35649939 C G KIAA0391 Missense_Mutation p.L411V 0.16 deleterious(0) probably_damaging(0.953) TCGA-DD-AADM-01 14 50266232 50266232 T G NEMF Missense_Mutation p.K809T 0.16 tolerated(0.23) benign(0.04) TCGA-DD-AADM-01 14 70246027 70246027 A T SLC10A1 Silent p.S206S 0.27 TCGA-DD-AADM-01 14 76113046 76113046 C T FLVCR2 3'UTR 0.27 TCGA-DD-AADM-01 14 93118677 93118677 A G RIN3 Missense_Mutation p.E428G 0.13 tolerated(0.2) benign(0) TCGA-DD-AADM-01 15 42054035 42054035 A G MGA Silent p.V2499V 0.26 TCGA-DD-AADM-01 15 52258161 52258161 T A LEO1 Missense_Mutation p.E200V 0.13 deleterious_low_confidence(0) benign(0.174) TCGA-DD-AADM-01 15 75111586 75111586 G T LMAN1L Missense_Mutation p.V231F 0.32 deleterious(0.02) probably_damaging(0.961) TCGA-DD-AADM-01 16 12497309 12497318 AACCGGGCGC - SNX29 Frame_Shift_Del p.N654* 0.28 TCGA-DD-AADM-01 16 20359779 20359779 A C UMOD Missense_Mutation p.C282G 0.14 deleterious(0) probably_damaging(0.999) TCGA-DD-AADM-01 16 27080315 27080315 G A C16orf82 RNA 0.16 TCGA-DD-AADM-01 16 27840137 27840137 G T GSG1L Missense_Mutation p.P268H 0.34 tolerated(0.39) benign(0.006) TCGA-DD-AADM-01 16 28187343 28187359 AGTTTGGGCAGACAGCT - XPO6 Frame_Shift_Del p.S89Pfs*6 0.11 TCGA-DD-AADM-01 16 3843532 3843532 C T CREBBP Silent p.Q357Q 0.44 TCGA-DD-AADM-01 16 53514601 53514602 - G RBL2 Frame_Shift_Ins p.D1004Rfs*15 0.11 TCGA-DD-AADM-01 16 54966798 54966798 C G IRX5 Missense_Mutation p.P213R 0.29 tolerated(0.31) benign(0.065) TCGA-DD-AADM-01 16 57805281 57805281 C T KIFC3 Silent p.L198L 0.25 TCGA-DD-AADM-01 16 75512350 75512350 G T CHST6 3'UTR 0.71 TCGA-DD-AADM-01 16 75512351 75512351 A T CHST6 3'UTR 0.67 TCGA-DD-AADM-01 17 16842939 16842939 C A TNFRSF13B Silent p.L268L 0.20 TCGA-DD-AADM-01 17 27228310 27228310 G A DHRS13 Missense_Mutation p.S127F 0.42 tolerated(0.7) probably_damaging(0.959) TCGA-DD-AADM-01 17 37331579 37331579 T C CACNB1 Missense_Mutation p.Y555C 0.14 tolerated_low_confidence(0.16) benign(0.161) TCGA-DD-AADM-01 17 37872630 37872630 C T ERBB2 Silent p.N530N 0.21 TCGA-DD-AADM-01 17 39577655 39577655 G T KRT37 Missense_Mutation p.A402D 0.34 tolerated(0.4) benign(0.076) TCGA-DD-AADM-01 17 46688357 46688357 G C HOXB7 5'UTR 0.21 TCGA-DD-AADM-01 17 48940311 48940311 T C TOB1 3'UTR 0.22 TCGA-DD-AADM-01 17 5286425 5286425 A T RABEP1 Missense_Mutation p.L832F 0.25 deleterious(0) probably_damaging(0.945) TCGA-DD-AADM-01 17 65343347 65343347 T C PSMD12 Missense_Mutation p.Y227C 0.13 deleterious(0) probably_damaging(0.966) TCGA-DD-AADM-01 18 19154672 19154672 T C ESCO1 Missense_Mutation p.I45V 0.11 tolerated(1) benign(0) TCGA-DD-AADM-01 18 24127852 24127852 A T KCTD1 Intron 0.08 TCGA-DD-AADM-01 18 32953439 32953439 A C ZNF396 Silent p.L181L 0.55 TCGA-DD-AADM-01 18 51057014 51057014 A C DCC Silent p.S1445S 0.37 TCGA-DD-AADM-01 18 55288968 55288968 C T NARS 5'UTR 0.11 TCGA-DD-AADM-01 18 56402506 56402506 A G MALT1 Silent p.K516K 0.12 TCGA-DD-AADM-01 18 61597343 61597343 C T SERPINB10 Silent p.N185N 0.26 TCGA-DD-AADM-01 18 70205499 70205499 T C CBLN2 Missense_Mutation p.D196G 0.14 deleterious(0) probably_damaging(1) TCGA-DD-AADM-01 19 10602646 10602646 T A KEAP1 Missense_Mutation p.H311L 0.54 deleterious(0.01) benign(0.005) TCGA-DD-AADM-01 19 10610207 10610207 A C KEAP1 Missense_Mutation p.V168G 0.33 deleterious(0) possibly_damaging(0.871) TCGA-DD-AADM-01 19 12256356 12256356 T C ZNF625 Missense_Mutation p.Y292C 0.29 tolerated(0.18) possibly_damaging(0.634) TCGA-DD-AADM-01 19 12512029 12512029 G A ZNF799 5'UTR 0.21 TCGA-DD-AADM-01 19 14583393 14583393 G C PTGER1 Missense_Mutation p.H396Q 0.20 tolerated(0.24) unknown(0) TCGA-DD-AADM-01 19 22575383 22575383 G A ZNF98 Silent p.A218A 0.32 TCGA-DD-AADM-01 19 22575384 22575384 G T ZNF98 Missense_Mutation p.A218D 0.32 deleterious(0.04) probably_damaging(0.998) TCGA-DD-AADM-01 19 38230022 38230022 G T ZNF573 Missense_Mutation p.L457I 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-DD-AADM-01 19 38379360 38379360 C G WDR87 Missense_Mutation p.E1612Q 0.08 probably_damaging(0.996) TCGA-DD-AADM-01 19 4323803 4323804 - CT FSD1 3'UTR 0.57 TCGA-DD-AADM-01 19 47192926 47192926 C T PRKD2 Silent p.L613L 0.06 TCGA-DD-AADM-01 19 48643354 48643354 C T LIG1 Missense_Mutation p.A321T 0.07 tolerated(0.22) benign(0.018) TCGA-DD-AADM-01 19 49473108 49473108 T C GYS1 Missense_Mutation p.Y605C 0.12 deleterious(0) probably_damaging(0.999) TCGA-DD-AADM-01 19 52375982 52375982 C T ZNF577 Missense_Mutation p.G421R 0.08 tolerated(0.08) benign(0.002) TCGA-DD-AADM-01 19 53754810 53754810 C T ZNF677 5'UTR 0.19 TCGA-DD-AADM-01 19 53885207 53885207 A G ZNF525 Missense_Mutation p.R459G 0.09 tolerated(0.08) benign(0.051) TCGA-DD-AADM-01 19 54947007 54947007 G A TTYH1 Intron 0.39 TCGA-DD-AADM-01 19 55147327 55147327 G C AC009892.10 3'UTR 0.05 TCGA-DD-AADM-01 19 58264991 58264991 A G ZNF776 Missense_Mutation p.I165V 0.18 tolerated(0.46) benign(0.004) TCGA-DD-AADM-01 19 58511123 58511123 G A ZNF606 Intron 0.60 TCGA-DD-AADM-01 19 6481718 6481718 G T DENND1C 5'UTR 0.61 TCGA-DD-AADM-01 19 7795687 7795687 C G CLEC4G Silent p.A114A 0.34 TCGA-DD-AADM-01 19 9721732 9721732 C T ZNF561 Missense_Mutation p.C202Y 0.27 tolerated(0.08) probably_damaging(0.958) TCGA-DD-AADM-01 1 108322109 108322109 T C VAV3 Missense_Mutation p.I109M 0.13 tolerated(0.13) benign(0.165) TCGA-DD-AADM-01 1 113237434 113237434 G A MOV10 Silent p.T512T 0.23 TCGA-DD-AADM-01 1 150978641 150978642 - T FAM63A 5'UTR 0.08 TCGA-DD-AADM-01 1 160303442 160303442 C A COPA Missense_Mutation p.D113Y 0.68 deleterious(0) probably_damaging(1) TCGA-DD-AADM-01 1 163117086 163117087 - T RGS5 3'UTR 0.10 TCGA-DD-AADM-01 1 169773232 169773232 A T C1orf112 Missense_Mutation p.Y110F 0.08 deleterious(0) probably_damaging(0.993) TCGA-DD-AADM-01 1 176913059 176913059 G T ASTN1 Nonsense_Mutation p.S782* 0.06 TCGA-DD-AADM-01 1 179562710 179562710 A G TDRD5 Silent p.R116R 0.12 TCGA-DD-AADM-01 1 186045722 186045722 T C HMCN1 Missense_Mutation p.L2818P 0.14 probably_damaging(0.999) TCGA-DD-AADM-01 1 186135944 186135944 T C HMCN1 Silent p.I5148I 0.08 TCGA-DD-AADM-01 1 19472600 19472600 T C UBR4 Intron 0.17 TCGA-DD-AADM-01 1 200558357 200558357 C T KIF14 Silent p.L1034L 0.07 TCGA-DD-AADM-01 1 202920181 202920181 T A ADIPOR1 Silent p.G6G 0.07 TCGA-DD-AADM-01 1 205053415 205053415 T A TMEM81 Missense_Mutation p.S12C 0.06 tolerated(0.12) possibly_damaging(0.794) TCGA-DD-AADM-01 1 207870917 207870917 G C CR1L Missense_Mutation p.G311A 0.06 deleterious(0) probably_damaging(0.997) TCGA-DD-AADM-01 1 213125028 213125028 G A VASH2 Silent p.L48L 0.36 TCGA-DD-AADM-01 1 220232311 220232311 T G BPNT1 Missense_Mutation p.N268H 0.14 deleterious(0.03) probably_damaging(0.967) TCGA-DD-AADM-01 1 221057792 221057792 A G HLX Missense_Mutation p.T405A 0.21 deleterious_low_confidence(0.03) benign(0.004) TCGA-DD-AADM-01 1 226923289 226923289 T C ITPKB Missense_Mutation p.E624G 0.07 deleterious(0.01) probably_damaging(0.973) TCGA-DD-AADM-01 1 229441089 229441089 G A RAB4A 3'UTR 0.08 TCGA-DD-AADM-01 1 231829938 231829938 A G DISC1 Missense_Mutation p.Q145R 0.13 tolerated(0.43) benign(0.026) TCGA-DD-AADM-01 1 23885468 23885468 T G ID3 Silent p.R115R 0.58 TCGA-DD-AADM-01 1 242253023 242253023 T C PLD5 3'UTR 0.09 TCGA-DD-AADM-01 1 244643048 244643048 A T C1orf101 Missense_Mutation p.E96D 0.22 tolerated(1) benign(0) TCGA-DD-AADM-01 1 248685500 248685500 A C OR2G6 Missense_Mutation p.I185L 0.07 tolerated(0.95) benign(0.074) TCGA-DD-AADM-01 1 28167686 28167686 G A PPP1R8 Missense_Mutation p.G145R 0.21 tolerated(0.49) benign(0.009) TCGA-DD-AADM-01 1 37949334 37949334 A C ZC3H12A 3'UTR 0.48 TCGA-DD-AADM-01 1 40310251 40310251 T - TRIT1 Frame_Shift_Del p.E357Sfs*25 0.24 TCGA-DD-AADM-01 1 47746094 47746131 TTGCTGTGGGGAGAACAACTGCCCATATCTCCCTGAGG - STIL Frame_Shift_Del p.P667Yfs*2 0.12 TCGA-DD-AADM-01 1 51761628 51761628 G A TTC39A Intron 0.12 TCGA-DD-AADM-01 1 71513044 71513044 C A PTGER3 Missense_Mutation p.V73L 0.29 tolerated(0.96) probably_damaging(0.987) TCGA-DD-AADM-01 1 71538233 71538233 T C ZRANB2 Splice_Site p.X101_splice 0.03 TCGA-DD-AADM-01 1 72748049 72748049 C A NEGR1 Silent p.A43A 0.08 TCGA-DD-AADM-01 1 82456669 82456669 A G LPHN2 Missense_Mutation p.Y1351C 0.20 deleterious_low_confidence(0.01) probably_damaging(0.959) TCGA-DD-AADM-01 1 94639693 94639693 A C ARHGAP29 Missense_Mutation p.I1173S 0.17 tolerated(0.86) benign(0) TCGA-DD-AADM-01 20 20505080 20505080 G A RALGAPA2 Silent p.A1290A 0.35 TCGA-DD-AADM-01 20 29891100 29891100 A G DEFB116 Missense_Mutation p.I75T 0.08 tolerated(0.16) benign(0.001) TCGA-DD-AADM-01 20 31573549 31573549 A G SUN5 Missense_Mutation p.V297A 0.17 tolerated(0.7) benign(0.249) TCGA-DD-AADM-01 20 31812207 31812207 T C BPIFA3 Missense_Mutation p.S109P 0.18 deleterious(0.01) probably_damaging(0.966) TCGA-DD-AADM-01 20 44519838 44519838 T G CTSA 5'UTR 0.22 TCGA-DD-AADM-01 20 57475206 57475206 T G GNAS Intron 0.29 TCGA-DD-AADM-01 21 27086971 27086971 C G JAM2 3'Flank 0.15 TCGA-DD-AADM-01 22 21161689 21161689 T C PI4KA Missense_Mutation p.M377V 0.38 tolerated(0.34) benign(0.001) TCGA-DD-AADM-01 22 29191015 29191015 T C XBP1 3'UTR 0.31 TCGA-DD-AADM-01 22 32003949 32003949 G A SFI1 Silent p.V728V 0.12 TCGA-DD-AADM-01 22 37272032 37272032 A T NCF4 Missense_Mutation p.Q322L 0.13 deleterious_low_confidence(0) benign(0.069) TCGA-DD-AADM-01 22 42525795 42525795 G C CYP2D6 Silent p.A99A 0.06 TCGA-DD-AADM-01 2 111398716 111398716 A T BUB1 Missense_Mutation p.S950R 0.21 deleterious(0) probably_damaging(0.999) TCGA-DD-AADM-01 2 152267846 152267846 T G RIF1 Silent p.V59V 0.11 TCGA-DD-AADM-01 2 170597991 170597991 A G KLHL23 Missense_Mutation p.Q437R 0.09 deleterious(0) probably_damaging(0.998) TCGA-DD-AADM-01 2 179574355 179574355 T C TTN Missense_Mutation p.Y9564C 0.15 TCGA-DD-AADM-01 2 18757614 18757614 A C NT5C1B Missense_Mutation p.F449V 0.18 deleterious(0.05) possibly_damaging(0.836) TCGA-DD-AADM-01 2 196636398 196636398 G A DNAH7 Nonsense_Mutation p.Q3807* 0.42 TCGA-DD-AADM-01 2 197594381 197594381 A C CCDC150 Intron 0.23 TCGA-DD-AADM-01 2 202001018 202001018 A T CFLAR Intron 0.16 TCGA-DD-AADM-01 2 218939937 218939937 A G RUFY4 Missense_Mutation p.Q261R 0.22 tolerated(0.11) benign(0.018) TCGA-DD-AADM-01 2 223781203 223781203 A G ACSL3 Missense_Mutation p.Y182C 0.36 tolerated(0.16) benign(0.004) TCGA-DD-AADM-01 2 228883428 228883428 T A SPHKAP Missense_Mutation p.L714F 0.31 tolerated(1) benign(0) TCGA-DD-AADM-01 2 233410429 233410429 C T CHRNG 3'UTR 0.16 TCGA-DD-AADM-01 2 233757625 233757626 - CG NGEF Frame_Shift_Ins p.T376Gfs*16 0.14 TCGA-DD-AADM-01 2 239059526 239059526 C T KLHL30 Silent p.G519G 0.11 TCGA-DD-AADM-01 2 241066176 241066176 T G MYEOV2 Missense_Mutation p.K188T 0.11 deleterious_low_confidence(0) unknown(0) TCGA-DD-AADM-01 2 61236071 61236071 T C PUS10 Missense_Mutation p.K69R 0.18 deleterious(0.04) probably_damaging(0.988) TCGA-DD-AADM-01 2 62107502 62107502 T C CCT4 Missense_Mutation p.I100V 0.18 tolerated(0.85) benign(0.088) TCGA-DD-AADM-01 3 108380762 108380762 T A DZIP3 Silent p.T746T 0.37 TCGA-DD-AADM-01 3 111710719 111710719 A G ABHD10 3'UTR 0.39 TCGA-DD-AADM-01 3 115529252 115529252 G A LSAMP Missense_Mutation p.S310L 0.24 deleterious(0) benign(0.012) TCGA-DD-AADM-01 3 123634282 123634283 - A CCDC14 Frame_Shift_Ins p.S695* 0.19 TCGA-DD-AADM-01 3 130110508 130110508 A C COL6A5 Missense_Mutation p.K968T 0.12 tolerated(0.11) benign(0.04) TCGA-DD-AADM-01 3 138478168 138478168 T G PIK3CB Silent p.I6I 0.13 TCGA-DD-AADM-01 3 140401718 140401718 C A TRIM42 Silent p.I252I 0.23 TCGA-DD-AADM-01 3 160233335 160233335 T C KPNA4 Missense_Mutation p.T313A 0.36 tolerated(0.06) possibly_damaging(0.52) TCGA-DD-AADM-01 3 33759519 33759519 C G CLASP2 5'UTR 0.47 TCGA-DD-AADM-01 3 39152495 39152495 G C TTC21A Missense_Mutation p.R141T 0.12 tolerated(0.26) benign(0.002) TCGA-DD-AADM-01 3 41274911 41274911 T A CTNNB1 Missense_Mutation p.N387K 0.12 deleterious(0) probably_damaging(0.996) TCGA-DD-AADM-01 3 44635911 44635911 A G ZNF660 Missense_Mutation p.K76E 0.10 deleterious(0) probably_damaging(0.99) TCGA-DD-AADM-01 3 50314251 50314251 A T LSMEM2 5'Flank 0.33 TCGA-DD-AADM-01 3 57557911 57557911 A C ARF4 3'UTR 0.12 TCGA-DD-AADM-01 4 100518239 100518239 C G MTTP Missense_Mutation p.R309G 0.17 deleterious(0.01) benign(0.109) TCGA-DD-AADM-01 4 122053773 122053773 T C TNIP3 3'UTR 0.18 TCGA-DD-AADM-01 4 122078298 122078298 T A TNIP3 Missense_Mutation p.E182V 0.21 tolerated(0.08) benign(0.173) TCGA-DD-AADM-01 4 15010011 15010011 A G CPEB2 Missense_Mutation p.D665G 0.11 deleterious_low_confidence(0.02) benign(0.001) TCGA-DD-AADM-01 4 155510651 155510651 C T FGA Missense_Mutation p.V40M 0.39 tolerated(0.17) possibly_damaging(0.608) TCGA-DD-AADM-01 4 183721247 183721247 G A TENM3 Missense_Mutation p.E2615K 0.29 tolerated(0.06) possibly_damaging(0.651) TCGA-DD-AADM-01 4 187527226 187527226 G A FAT1 Nonsense_Mutation p.Q3450* 0.17 TCGA-DD-AADM-01 4 26432500 26432500 A T RBPJ Silent p.G458G 0.16 TCGA-DD-AADM-01 4 3769054 3769054 A G ADRA2C Missense_Mutation p.T241A 0.12 tolerated(0.08) benign(0.326) TCGA-DD-AADM-01 4 52928483 52928483 A G SPATA18 Missense_Mutation p.N136S 0.10 tolerated(0.28) benign(0.004) TCGA-DD-AADM-01 4 57250358 57250358 C G AASDH Missense_Mutation p.K36N 0.14 tolerated(0.09) possibly_damaging(0.776) TCGA-DD-AADM-01 4 6303155 6303155 G A WFS1 Missense_Mutation p.V545M 0.26 tolerated(0.14) probably_damaging(0.997) TCGA-DD-AADM-01 4 78697452 78697453 - T CNOT6L Frame_Shift_Ins p.S34Ifs*11 0.24 TCGA-DD-AADM-01 5 112175181 112175181 A G APC Missense_Mutation p.D1297G 0.09 benign(0.021) TCGA-DD-AADM-01 5 112228224 112228225 - TA ZRSR1 Frame_Shift_Ins p.A298Mfs*13 0.08 TCGA-DD-AADM-01 5 134193802 134193802 A G C5orf24 3'UTR 0.08 TCGA-DD-AADM-01 5 134914200 134914200 G A CXCL14 Missense_Mutation p.P44S 0.10 deleterious(0.02) probably_damaging(0.96) TCGA-DD-AADM-01 5 137230131 137230133 CTA - PKD2L2 In_Frame_Del p.Y121del 0.60 TCGA-DD-AADM-01 5 140555445 140555445 T C PCDHB7 3'UTR 0.10 TCGA-DD-AADM-01 5 140730572 140730572 C G PCDHGB1 Missense_Mutation p.Q249E 0.21 tolerated(0.55) benign(0.314) TCGA-DD-AADM-01 5 158603801 158603801 G A RNF145 Missense_Mutation p.L184F 0.21 deleterious(0) probably_damaging(0.998) TCGA-DD-AADM-01 5 169502981 169502981 C T DOCK2 Missense_Mutation p.H1587Y 0.15 deleterious(0) probably_damaging(0.994) TCGA-DD-AADM-01 5 180043901 180043901 T A FLT4 Missense_Mutation p.K1032M 0.06 deleterious(0) probably_damaging(0.997) TCGA-DD-AADM-01 5 54637521 54637521 A T SKIV2L2 Missense_Mutation p.M235L 0.14 deleterious(0) probably_damaging(0.999) TCGA-DD-AADM-01 5 57791727 57791727 T C GAPT 3'UTR 0.40 TCGA-DD-AADM-01 5 68400009 68400009 G T SLC30A5 Intron 0.14 TCGA-DD-AADM-01 5 68728916 68728916 G T MARVELD2 Missense_Mutation p.R500L 0.13 tolerated(0.74) benign(0.004) TCGA-DD-AADM-01 5 7396475 7396476 - GGG ADCY2 In_Frame_Ins p.G23dup 0.17 TCGA-DD-AADM-01 5 89947508 89947508 T C GPR98 Missense_Mutation p.I1126T 0.08 benign(0.005) TCGA-DD-AADM-01 6 142396877 142396877 G A NMBR Missense_Mutation p.R361C 0.14 tolerated(0.08) possibly_damaging(0.808) TCGA-DD-AADM-01 6 153310864 153310864 A C MTRF1L 3'UTR 0.67 TCGA-DD-AADM-01 6 154429260 154429260 A G OPRM1 Intron 0.13 TCGA-DD-AADM-01 6 157405805 157405805 G - ARID1B Frame_Shift_Del p.G683Afs*14 0.09 TCGA-DD-AADM-01 6 161519420 161519420 C G MAP3K4 Missense_Mutation p.S1212C 0.09 tolerated(0.19) benign(0.008) TCGA-DD-AADM-01 6 20846331 20846331 A - CDKAL1 Frame_Shift_Del p.T223Lfs*16 0.21 TCGA-DD-AADM-01 6 27860497 27860497 C T HIST1H2AM 3'UTR 0.28 TCGA-DD-AADM-01 6 28117286 28117286 G A ZKSCAN8 Missense_Mutation p.R148K 0.49 tolerated(0.12) benign(0.014) TCGA-DD-AADM-01 6 29694984 29694984 T C HLA-F 3'UTR 0.22 TCGA-DD-AADM-01 6 30569817 30569817 T A PPP1R10 Missense_Mutation p.H870L 0.12 deleterious_low_confidence(0.02) unknown(0) TCGA-DD-AADM-01 6 31627289 31627336 CCAATGGGGCTCCTGGCCCAGGGACGCTCAGTCCCCCTTCAGGGGACA - C6orf47 In_Frame_Del p.V130_L145del 0.26 TCGA-DD-AADM-01 6 41653841 41653841 C A TFEB Missense_Mutation p.W313L 0.28 tolerated(1) benign(0.002) TCGA-DD-AADM-01 6 41653843 41653843 G C TFEB Silent p.L312L 0.27 TCGA-DD-AADM-01 6 42689615 42689615 T C PRPH2 Missense_Mutation p.K153R 0.12 deleterious(0) probably_damaging(0.992) TCGA-DD-AADM-01 6 43276057 43276057 G T CRIP3 Missense_Mutation p.A45E 0.09 deleterious(0) probably_damaging(0.999) TCGA-DD-AADM-01 6 47548615 47548615 C A CD2AP Missense_Mutation p.P342T 0.11 tolerated(0.07) probably_damaging(0.946) TCGA-DD-AADM-01 6 57059644 57059644 T A RAB23 Missense_Mutation p.E135D 0.31 tolerated(0.07) benign(0.014) TCGA-DD-AADM-01 6 80717572 80717572 A T TTK Silent p.P62P 0.23 TCGA-DD-AADM-01 6 90346886 90346886 T C LYRM2 3'UTR 0.18 TCGA-DD-AADM-01 6 96653238 96653238 G T FUT9 3'UTR 0.14 TCGA-DD-AADM-01 6 99885203 99885203 C G USP45 Missense_Mutation p.G745R 0.41 deleterious(0) probably_damaging(1) TCGA-DD-AADM-01 7 103155875 103155875 G C RELN Missense_Mutation p.L2626V 0.48 tolerated(0.36) probably_damaging(0.921) TCGA-DD-AADM-01 7 105260694 105260694 G A ATXN7L1 Silent p.F490F 0.16 TCGA-DD-AADM-01 7 107115516 107115516 A G GPR22 Silent p.L337L 0.09 TCGA-DD-AADM-01 7 108204423 108204423 T C THAP5 3'UTR 0.51 TCGA-DD-AADM-01 7 127014269 127014269 A G ZNF800 Missense_Mutation p.L374P 0.22 deleterious(0) probably_damaging(0.998) TCGA-DD-AADM-01 7 142605697 142605697 C A TRPV5 Nonsense_Mutation p.E725* 0.13 TCGA-DD-AADM-01 7 142627485 142627485 C A TRPV5 Missense_Mutation p.R62M 0.16 tolerated(0.08) benign(0.027) TCGA-DD-AADM-01 7 151168477 151168477 T A RHEB Intron 0.16 TCGA-DD-AADM-01 7 2472436 2472436 G A CHST12 Silent p.P54P 0.28 TCGA-DD-AADM-01 7 56119530 56119530 G T CCT6A 5'UTR 0.19 TCGA-DD-AADM-01 7 56119531 56119531 C T CCT6A 5'UTR 0.19 TCGA-DD-AADM-01 7 63982713 63982713 T G ZNF680 Missense_Mutation p.N140T 0.22 deleterious(0.01) possibly_damaging(0.871) TCGA-DD-AADM-01 7 75511209 75511209 A G RHBDD2 Missense_Mutation p.I81V 0.19 tolerated(1) benign(0.006) TCGA-DD-AADM-01 7 77549626 77549626 A G PHTF2 Silent p.K235K 0.19 TCGA-DD-AADM-01 7 80276132 80276132 C G CD36 Missense_Mutation p.L26V 0.17 deleterious(0.04) probably_damaging(0.927) TCGA-DD-AADM-01 7 82584346 82584346 T C PCLO Missense_Mutation p.T1975A 0.19 unknown(0) TCGA-DD-AADM-01 7 82584348 82584348 A G PCLO Missense_Mutation p.L1974P 0.19 unknown(0) TCGA-DD-AADM-01 7 87780310 87780310 T A ADAM22 Silent p.I527I 0.10 TCGA-DD-AADM-01 7 959636 959636 G A ADAP1 Silent p.I119I 0.36 TCGA-DD-AADM-01 7 99669473 99669494 TTCGATTAAAGCTCTTGCTACA - ZNF3 Frame_Shift_Del p.C205Lfs*213 0.13 TCGA-DD-AADM-01 8 101251571 101251571 T C SPAG1 Missense_Mutation p.L740P 0.26 tolerated(0.08) benign(0.009) TCGA-DD-AADM-01 8 142446016 142446016 G A PTP4A3 3'Flank 0.23 TCGA-DD-AADM-01 8 145730798 145730798 A C GPT Missense_Mutation p.H222P 0.24 deleterious(0.01) benign(0.154) TCGA-DD-AADM-01 8 17612099 17612099 G A MTUS1 Silent p.G406G 0.59 TCGA-DD-AADM-01 8 30958398 30958398 G A WRN Missense_Mutation p.C672Y 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AADM-01 8 41905925 41905925 C A KAT6A Missense_Mutation p.V191L 0.09 probably_damaging(0.928) TCGA-DD-AADM-01 8 48774689 48774689 C A PRKDC Splice_Site p.X1973_splice 0.10 TCGA-DD-AADM-01 8 89068475 89068475 A G MMP16 Silent p.T418T 0.17 TCGA-DD-AADM-01 8 94938016 94938016 T C PDP1 3'UTR 0.18 TCGA-DD-AADM-01 8 97797311 97797311 A C CPQ Missense_Mutation p.R62S 0.37 tolerated(0.16) benign(0.017) TCGA-DD-AADM-01 8 97797316 97797316 A G CPQ Missense_Mutation p.Y64C 0.38 deleterious(0) probably_damaging(0.986) TCGA-DD-AADM-01 9 123342428 123342428 G A CDK5RAP2 5'UTR 0.13 TCGA-DD-AADM-01 9 123875959 123875959 A G CNTRL Silent p.P434P 0.19 TCGA-DD-AADM-01 9 131468992 131468992 G A PKN3 Missense_Mutation p.E138K 0.17 deleterious(0.04) possibly_damaging(0.684) TCGA-DD-AADM-01 9 134004694 134004694 A G NUP214 Missense_Mutation p.Y141C 0.31 unknown(0) TCGA-DD-AADM-01 9 136505113 136505113 A T DBH Missense_Mutation p.E162V 0.32 deleterious(0) probably_damaging(0.925) TCGA-DD-AADM-01 9 137642421 137642421 G C COL5A1 Missense_Mutation p.D510H 0.31 probably_damaging(1) TCGA-DD-AADM-01 9 137809681 137809681 C T FCN1 Missense_Mutation p.A13T 0.12 tolerated(0.63) benign(0.001) TCGA-DD-AADM-01 9 139100947 139100947 T C QSOX2 Missense_Mutation p.Q575R 0.21 tolerated(0.55) benign(0.003) TCGA-DD-AADM-01 9 140051158 140051158 A G GRIN1 Missense_Mutation p.M258V 0.43 tolerated(0.56) benign(0.007) TCGA-DD-AADM-01 9 140196011 140196011 C T NRARP 3'UTR 0.10 TCGA-DD-AADM-01 9 17330664 17330664 C T CNTLN Missense_Mutation p.T459M 0.19 tolerated(0.08) possibly_damaging(0.853) TCGA-DD-AADM-01 9 18928249 18928249 G T FAM154A Missense_Mutation p.T409N 0.38 tolerated(0.23) benign(0.003) TCGA-DD-AADM-01 9 21974713 21974713 G - CDKN2A Frame_Shift_Del p.N39Tfs*14 0.12 TCGA-DD-AADM-01 9 4713077 4713077 T C AK3 Missense_Mutation p.T195A 0.37 tolerated(0.05) benign(0.012) TCGA-DD-AADM-01 9 87359975 87359975 G - NTRK2 Frame_Shift_Del p.E429Nfs*10 0.10 TCGA-DD-AADM-01 X 100911407 100911407 T C ARMCX2 Missense_Mutation p.K390E 0.18 deleterious(0.03) probably_damaging(0.996) TCGA-DD-AADM-01 X 111914512 111914512 G C LHFPL1 Missense_Mutation p.S36C 0.25 deleterious(0.03) probably_damaging(0.928) TCGA-DD-AADM-01 X 115306086 115306086 C G AGTR2 3'UTR 0.45 TCGA-DD-AADM-01 X 148664900 148664900 C T MAGEA9B Intron 0.44 TCGA-DD-AADM-01 X 155004067 155004067 T C SPRY3 Silent p.A178A 0.39 TCGA-DD-AADM-01 X 1761898 1761898 C G ASMT Silent p.A371A 0.13 TCGA-DD-AADM-01 X 40526045 40526045 T C MED14 Silent p.S1064S 0.28 TCGA-DD-AADM-01 X 47039334 47039345 CCTGGCACCCTA - RBM10 In_Frame_Del p.L320_Y323del 0.21 TCGA-DD-AADM-01 X 48673109 48673109 G T HDAC6 Missense_Mutation p.A321S 0.75 tolerated(0.23) possibly_damaging(0.705) TCGA-DD-AADM-01 X 71838613 71838613 C G PHKA1 Missense_Mutation p.E772D 0.37 tolerated(0.52) benign(0.003) TCGA-DD-AADM-01 X 71838663 71838663 C G PHKA1 Missense_Mutation p.D756H 0.35 tolerated(0.06) possibly_damaging(0.695) TCGA-DD-AADN-01 10 115662337 115662337 C G NHLRC2 Missense_Mutation p.D493E 0.14 deleterious(0) probably_damaging(1) TCGA-DD-AADN-01 10 50820560 50820560 C T SLC18A3 3'UTR 0.40 TCGA-DD-AADN-01 10 96350289 96350289 G A HELLS Silent p.Q536Q 0.20 TCGA-DD-AADN-01 11 100996767 100996767 C G PGR Missense_Mutation p.C587S 0.19 deleterious(0) probably_damaging(0.999) TCGA-DD-AADN-01 11 108389093 108389093 T G EXPH5 Missense_Mutation p.K167T 0.29 deleterious(0.04) possibly_damaging(0.837) TCGA-DD-AADN-01 11 111591262 111591262 T C SIK2 Missense_Mutation p.M519T 0.19 tolerated(0.07) benign(0.149) TCGA-DD-AADN-01 11 111591283 111591283 T G SIK2 Missense_Mutation p.L526R 0.19 deleterious(0.01) possibly_damaging(0.736) TCGA-DD-AADN-01 11 36520132 36520132 G T TRAF6 Missense_Mutation p.P119T 0.23 deleterious(0) benign(0.19) TCGA-DD-AADN-01 11 47599068 47599068 G A KBTBD4 Missense_Mutation p.L178F 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-DD-AADN-01 11 56185178 56185178 G A OR5R1 Silent p.F177F 0.41 TCGA-DD-AADN-01 11 62558364 62558364 G C TMEM223 Missense_Mutation p.L114V 0.50 tolerated(0.14) benign(0.022) TCGA-DD-AADN-01 11 64756823 64756823 G A BATF2 Silent p.A201A 0.08 TCGA-DD-AADN-01 11 6643621 6643621 C T DCHS1 Missense_Mutation p.G3096R 0.33 deleterious(0) probably_damaging(0.983) TCGA-DD-AADN-01 11 75136531 75136531 G T KLHL35 Silent p.L427L 0.50 TCGA-DD-AADN-01 12 101295436 101295436 C G ANO4 5'UTR 0.15 TCGA-DD-AADN-01 12 49439845 49439845 C G KMT2D Intron 0.46 TCGA-DD-AADN-01 12 5021214 5021214 G A KCNA1 Missense_Mutation p.V224M 0.08 deleterious(0.03) possibly_damaging(0.501) TCGA-DD-AADN-01 12 71155351 71155351 A G PTPRR Missense_Mutation p.I176T 0.40 tolerated(0.39) benign(0.001) TCGA-DD-AADN-01 12 95927545 95927545 C A USP44 Missense_Mutation p.R163L 0.38 tolerated(0.08) benign(0.017) TCGA-DD-AADN-01 13 109777634 109777634 G A MYO16 Missense_Mutation p.R1215H 0.10 deleterious(0.02) benign(0.117) TCGA-DD-AADN-01 14 23415581 23415581 C T HAUS4 3'UTR 0.77 TCGA-DD-AADN-01 14 23503937 23503937 G A PSMB5 Missense_Mutation p.P52S 0.25 tolerated(0.26) benign(0.057) TCGA-DD-AADN-01 14 33014464 33014464 A T AKAP6 Missense_Mutation p.D202V 0.21 deleterious(0) probably_damaging(0.999) TCGA-DD-AADN-01 14 36211696 36211696 C T RALGAPA1 Missense_Mutation p.E443K 0.18 tolerated(0.1) benign(0.036) TCGA-DD-AADN-01 14 92076871 92076871 C T CATSPERB Missense_Mutation p.G851R 0.21 deleterious(0) probably_damaging(0.989) TCGA-DD-AADN-01 15 24927043 24927043 C G NPAP1 3'UTR 0.19 TCGA-DD-AADN-01 15 38798090 38798090 T C RASGRP1 Missense_Mutation p.E425G 0.42 deleterious(0) probably_damaging(0.996) TCGA-DD-AADN-01 15 41165411 41165411 A G RHOV Missense_Mutation p.C186R 0.22 deleterious(0) probably_damaging(0.987) TCGA-DD-AADN-01 15 41191757 41191757 C T VPS18 Silent p.L247L 0.48 TCGA-DD-AADN-01 15 71124842 71124842 G A LARP6 Missense_Mutation p.P342L 0.17 deleterious(0.01) possibly_damaging(0.579) TCGA-DD-AADN-01 15 79178486 79178486 G T MORF4L1 Missense_Mutation p.W92C 0.20 deleterious(0) probably_damaging(0.968) TCGA-DD-AADN-01 15 89744521 89744526 TCTGTT G ABHD2 3'UTR 0.42 TCGA-DD-AADN-01 16 1401581 1401581 G T TSR3 Missense_Mutation p.A44E 0.25 tolerated(0.64) benign(0.004) TCGA-DD-AADN-01 16 31142161 31142161 A T KAT8 Missense_Mutation p.T418S 0.15 tolerated(0.19) benign(0.019) TCGA-DD-AADN-01 16 50667280 50667280 G T NKD1 Missense_Mutation p.R334L 0.29 deleterious(0) probably_damaging(0.976) TCGA-DD-AADN-01 16 57416592 57416592 G A CX3CL1 Missense_Mutation p.G281D 0.35 tolerated(0.3) benign(0.017) TCGA-DD-AADN-01 16 67517252 67517252 G A AGRP Missense_Mutation p.A17V 0.17 tolerated(0.92) unknown(0) TCGA-DD-AADN-01 16 68265859 68265859 A C ESRP2 Missense_Mutation p.L382R 0.14 deleterious(0) probably_damaging(0.996) TCGA-DD-AADN-01 16 71004531 71004531 T C HYDIN Silent p.L1837L 0.62 TCGA-DD-AADN-01 16 732126 732126 C A JMJD8 3'UTR 0.29 TCGA-DD-AADN-01 17 11660954 11660954 T A DNAH9 Missense_Mutation p.L2314I 0.55 possibly_damaging(0.573) TCGA-DD-AADN-01 17 12656632 12656632 C T MYOCD Missense_Mutation p.S676L 0.60 tolerated(0.14) possibly_damaging(0.815) TCGA-DD-AADN-01 17 39305699 39305699 T C KRTAP4-5 Silent p.R107R 0.52 TCGA-DD-AADN-01 17 53345280 53345280 A G HLF Missense_Mutation p.N95S 0.31 deleterious(0) probably_damaging(0.993) TCGA-DD-AADN-01 17 74722553 74722553 T G JMJD6 Missense_Mutation p.N2T 0.57 deleterious(0.04) benign(0.192) TCGA-DD-AADN-01 17 7578237 7578238 CT - TP53 Frame_Shift_Del p.E204Vfs*4 0.36 TCGA-DD-AADN-01 18 44580795 44580795 A T KATNAL2 Missense_Mutation p.R34S 0.18 tolerated(0.81) benign(0.001) TCGA-DD-AADN-01 18 48345993 48345993 C G MRO Silent p.T33T 0.17 TCGA-DD-AADN-01 18 61570480 61570480 C T SERPINB2 Missense_Mutation p.L397F 0.07 tolerated(1) benign(0.007) TCGA-DD-AADN-01 18 77137276 77137276 C A ATP9B Missense_Mutation p.L1113M 0.25 deleterious(0.01) benign(0.024) TCGA-DD-AADN-01 18 9208736 9208736 A G ANKRD12 Missense_Mutation p.Y129C 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AADN-01 19 11145796 11145796 G T SMARCA4 Missense_Mutation p.K1386N 0.32 probably_damaging(0.998) TCGA-DD-AADN-01 19 15839113 15839113 C T OR10H2 Missense_Mutation p.S87F 0.13 tolerated(0.07) benign(0.02) TCGA-DD-AADN-01 19 15918588 15918588 G A OR10H1 Missense_Mutation p.S87F 0.21 tolerated(0.08) benign(0.027) TCGA-DD-AADN-01 19 18707565 18707565 G A CRLF1 Silent p.R297R 0.32 TCGA-DD-AADN-01 19 18991094 18991094 G T CERS1 Missense_Mutation p.F247L 0.46 deleterious(0.04) possibly_damaging(0.633) TCGA-DD-AADN-01 19 41111717 41111717 A C LTBP4 Missense_Mutation p.Q325P 0.21 tolerated(0.14) benign(0.315) TCGA-DD-AADN-01 19 55417692 55417692 C T NCR1 Nonsense_Mutation p.Q24* 0.54 TCGA-DD-AADN-01 19 55493985 55493985 G T NLRP2 Missense_Mutation p.D307Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-DD-AADN-01 19 9577581 9577581 T C ZNF560 Missense_Mutation p.E681G 0.42 deleterious(0) possibly_damaging(0.727) TCGA-DD-AADN-01 1 110596387 110596387 C - STRIP1 Frame_Shift_Del p.P790Lfs*26 0.30 TCGA-DD-AADN-01 1 113464731 113464731 T A SLC16A1 Missense_Mutation p.N81I 0.20 deleterious(0) probably_damaging(0.985) TCGA-DD-AADN-01 1 12337226 12337226 C T VPS13D Missense_Mutation p.A1194V 0.36 possibly_damaging(0.905) TCGA-DD-AADN-01 1 157494289 157494289 C T FCRL5 Silent p.G673G 0.25 TCGA-DD-AADN-01 1 160136391 160136391 C T ATP1A4 Missense_Mutation p.T374M 0.19 deleterious(0) probably_damaging(1) TCGA-DD-AADN-01 1 201023635 201023635 C T CACNA1S Missense_Mutation p.V1222I 0.05 tolerated_low_confidence(0.26) benign(0.014) TCGA-DD-AADN-01 1 22048144 22048144 C A USP48 Missense_Mutation p.G588C 0.48 deleterious(0.04) benign(0.246) TCGA-DD-AADN-01 1 226127110 226127110 G T LEFTY2 Missense_Mutation p.L230I 0.24 tolerated(0.38) benign(0.131) TCGA-DD-AADN-01 1 235897870 235897870 C A LYST Silent p.L2816L 0.17 TCGA-DD-AADN-01 1 237889575 237889575 G A RYR2 Silent p.K3564K 0.13 TCGA-DD-AADN-01 1 248039229 248039229 C A TRIM58 Missense_Mutation p.A300E 0.23 deleterious(0) probably_damaging(1) TCGA-DD-AADN-01 1 27220888 27220888 C T GPATCH3 Missense_Mutation p.G297D 0.08 tolerated(0.67) benign(0.005) TCGA-DD-AADN-01 1 32828424 32828424 T C TSSK3 Missense_Mutation p.I41T 0.21 deleterious(0.03) benign(0.245) TCGA-DD-AADN-01 1 39800759 39800759 G A MACF1 Intron 0.19 TCGA-DD-AADN-01 1 41976105 41976105 A C HIVEP3 3'UTR 0.45 TCGA-DD-AADN-01 1 53682485 53682485 C T C1orf123 Missense_Mutation p.R103Q 0.07 deleterious(0.03) benign(0.221) TCGA-DD-AADN-01 1 92646304 92646304 G T KIAA1107 Nonsense_Mutation p.E584* 0.22 TCGA-DD-AADN-01 22 38318092 38318092 G A MICALL1 Missense_Mutation p.G228E 0.41 tolerated(0.57) benign(0.175) TCGA-DD-AADN-01 2 113278000 113278000 T A TTL Silent p.A339A 0.31 TCGA-DD-AADN-01 2 130878006 130878006 C T POTEF Missense_Mutation p.C28Y 0.29 deleterious_low_confidence(0) benign(0.297) TCGA-DD-AADN-01 2 141072505 141072505 T A LRP1B Silent p.L4268L 0.27 TCGA-DD-AADN-01 2 167151214 167151214 T C SCN9A Intron 0.24 TCGA-DD-AADN-01 2 179979934 179979935 - A SESTD1 Frame_Shift_Ins p.C566Lfs*30 0.09 TCGA-DD-AADN-01 2 187618644 187618659 TTACATACCTTTTTAG - FAM171B Splice_Site p.X299_splice 0.26 TCGA-DD-AADN-01 2 1926369 1926369 G T MYT1L Missense_Mutation p.P391H 0.14 deleterious(0) probably_damaging(1) TCGA-DD-AADN-01 2 25038488 25038488 C T CENPO Missense_Mutation p.H153Y 0.43 deleterious(0) probably_damaging(1) TCGA-DD-AADN-01 2 38810997 38810997 T C HNRNPLL Missense_Mutation p.I201M 0.20 deleterious(0.03) probably_damaging(0.952) TCGA-DD-AADN-01 2 49189731 49189731 C T FSHR 3'UTR 0.25 TCGA-DD-AADN-01 2 69746125 69746125 T A AAK1 Silent p.A486A 0.09 TCGA-DD-AADN-01 3 108773723 108773723 G T MORC1 Silent p.G394G 0.08 TCGA-DD-AADN-01 3 113588361 113588361 G T GRAMD1C Missense_Mutation p.S61I 0.08 deleterious(0) probably_damaging(0.921) TCGA-DD-AADN-01 3 128204630 128204630 G A GATA2 Silent p.L271L 0.38 TCGA-DD-AADN-01 3 141289753 141289753 G A RASA2 Splice_Site p.X288_splice 0.40 TCGA-DD-AADN-01 3 141499234 141499234 A - GRK7 Frame_Shift_Del p.N212Tfs*16 0.22 TCGA-DD-AADN-01 3 146234891 146234891 T A PLSCR1 Nonsense_Mutation p.R268* 0.39 TCGA-DD-AADN-01 3 147113964 147113964 G T ZIC4 Silent p.R171R 0.42 TCGA-DD-AADN-01 3 185635483 185635483 T - TRA2B 3'UTR 0.21 TCGA-DD-AADN-01 3 27436010 27436010 T A SLC4A7 Missense_Mutation p.K1030M 0.53 deleterious(0.01) probably_damaging(1) TCGA-DD-AADN-01 3 405083 405083 G A CHL1 Intron 0.33 TCGA-DD-AADN-01 3 44926965 44926965 C A TGM4 Missense_Mutation p.H56Q 0.51 deleterious(0.01) benign(0.061) TCGA-DD-AADN-01 3 46450950 46450950 C A CCRL2 3'UTR 0.52 TCGA-DD-AADN-01 3 46450951 46450951 C A CCRL2 3'UTR 0.52 TCGA-DD-AADN-01 3 57902658 57902658 A G SLMAP Missense_Mutation p.T688A 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.511) TCGA-DD-AADN-01 3 9876555 9876555 T C TTLL3 Silent p.D772D 0.51 TCGA-DD-AADN-01 4 129043173 129043173 A G LARP1B Missense_Mutation p.T452A 0.39 deleterious(0.03) possibly_damaging(0.831) TCGA-DD-AADN-01 4 143326464 143326464 G T INPP4B Silent p.L50L 0.19 TCGA-DD-AADN-01 4 17829968 17829968 C A NCAPG Nonsense_Mutation p.S574* 0.45 TCGA-DD-AADN-01 4 37848658 37848658 A G PGM2 Missense_Mutation p.T372A 0.40 tolerated(0.11) benign(0.001) TCGA-DD-AADN-01 4 46737255 46737255 G C COX7B2 5'UTR 0.34 TCGA-DD-AADN-01 4 88760856 88760856 A T MEPE Intron 0.12 TCGA-DD-AADN-01 5 112339697 112339697 T C DCP2 Missense_Mutation p.W289R 0.35 tolerated_low_confidence(0.37) benign(0.342) TCGA-DD-AADN-01 5 140431371 140431371 T C PCDHB1 Missense_Mutation p.F106L 0.39 deleterious(0.04) benign(0.299) TCGA-DD-AADN-01 5 176520656 176520656 C A FGFR4 Missense_Mutation p.L467M 0.10 deleterious(0) probably_damaging(1) TCGA-DD-AADN-01 5 43291268 43291268 G T HMGCS1 Missense_Mutation p.P510T 0.13 deleterious_low_confidence(0.02) benign(0.002) TCGA-DD-AADN-01 6 109484356 109484356 A G CEP57L1 3'UTR 0.32 TCGA-DD-AADN-01 6 143091533 143091533 A G HIVEP2 Missense_Mutation p.L1448S 0.08 deleterious(0) probably_damaging(0.999) TCGA-DD-AADN-01 6 160240288 160240288 C T PNLDC1 Missense_Mutation p.A468V 0.44 tolerated(0.71) benign(0.003) TCGA-DD-AADN-01 6 20955770 20955770 T C CDKAL1 Missense_Mutation p.L288P 0.06 deleterious(0) probably_damaging(0.995) TCGA-DD-AADN-01 6 30571840 30571840 T C PPP1R10 Missense_Mutation p.I485V 0.37 tolerated(0.28) benign(0.002) TCGA-DD-AADN-01 6 31939824 31939824 G C STK19 Missense_Mutation p.W17C 0.19 deleterious_low_confidence(0.03) benign(0.058) TCGA-DD-AADN-01 6 31994757 31994757 C G C4B Intron 0.18 TCGA-DD-AADN-01 6 39387781 39387781 T C KIF6 Splice_Site p.X585_splice 0.29 TCGA-DD-AADN-01 6 41766302 41766302 C T USP49 3'UTR 0.09 TCGA-DD-AADN-01 6 46828584 46828584 C A GPR116 Silent p.L749L 0.10 TCGA-DD-AADN-01 6 57037534 57037534 G T BAG2 Silent p.G13G 0.23 TCGA-DD-AADN-01 6 7568673 7568673 G T DSP Nonsense_Mutation p.E424* 0.42 TCGA-DD-AADN-01 6 79665367 79665367 T C PHIP Missense_Mutation p.Y1272C 0.38 tolerated(0.13) probably_damaging(0.996) TCGA-DD-AADN-01 6 83878007 83878007 T G PGM3 3'Flank 0.29 TCGA-DD-AADN-01 6 97052637 97052637 C A FHL5 Nonsense_Mutation p.Y57* 0.26 TCGA-DD-AADN-01 7 143141236 143141236 A G TAS2R60 Missense_Mutation p.T231A 0.61 tolerated(0.85) benign(0.01) TCGA-DD-AADN-01 7 42011956 42011956 C T GLI3 Missense_Mutation p.V695I 0.12 tolerated(1) benign(0.053) TCGA-DD-AADN-01 7 50683962 50683962 A G GRB10 Missense_Mutation p.L310P 0.54 deleterious(0.01) probably_damaging(0.916) TCGA-DD-AADN-01 7 6838619 6838619 A C CCZ1B 3'UTR 0.24 TCGA-DD-AADN-01 8 100127975 100127975 A G VPS13B Silent p.Q270Q 0.07 TCGA-DD-AADN-01 8 105509945 105509945 A C LRP12 Missense_Mutation p.Y279D 0.80 deleterious(0.04) probably_damaging(0.999) TCGA-DD-AADN-01 8 110457250 110457250 G A PKHD1L1 Missense_Mutation p.A1718T 0.11 tolerated(0.44) benign(0) TCGA-DD-AADN-01 8 113249531 113249531 G A CSMD3 Silent p.Y3505Y 0.78 TCGA-DD-AADN-01 8 119122935 119122935 G A EXT1 Silent p.Y117Y 0.05 TCGA-DD-AADN-01 8 12952358 12952358 C A DLC1 Missense_Mutation p.V1146L 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AADN-01 8 18658787 18658787 A C PSD3 Silent p.A672A 0.40 TCGA-DD-AADN-01 8 3087644 3087644 A G CSMD1 Silent p.Y1421Y 0.27 TCGA-DD-AADN-01 8 3326340 3326340 C A CSMD1 Silent p.T485T 0.31 TCGA-DD-AADN-01 8 37823680 37823680 C T ADRB3 Nonsense_Mutation p.W103* 0.28 TCGA-DD-AADN-01 8 69358638 69358638 T C C8orf34 Missense_Mutation p.S184P 0.04 deleterious(0) probably_damaging(0.999) TCGA-DD-AADN-01 8 91657520 91657520 C A TMEM64 Missense_Mutation p.G205V 0.06 deleterious(0) probably_damaging(0.943) TCGA-DD-AADN-01 9 135959859 135959859 T C CELP RNA 0.64 TCGA-DD-AADN-01 9 72374805 72374805 T C PTAR1 Missense_Mutation p.K17R 0.45 tolerated(0.13) benign(0.015) TCGA-DD-AADN-01 9 78947474 78947474 C T PCSK5 Nonsense_Mutation p.R1539* 0.29 TCGA-DD-AADN-01 X 137793148 137793148 G A FGF13 Intron 0.36 TCGA-DD-AADN-01 X 152814216 152814216 C T ATP2B3 Silent p.F414F 0.62 TCGA-DD-AADN-01 X 32862919 32862919 C A DMD Missense_Mutation p.R82L 0.61 benign(0.258) TCGA-DD-AADN-01 X 46713384 46713384 T C RP2 Silent p.D192D 0.57 TCGA-DD-AADN-01 X 92964868 92964868 A G FAM133A Silent p.E150E 0.53 TCGA-DD-AADN-01 Y 4967388 4967388 T C PCDH11Y Missense_Mutation p.V590A 0.38 deleterious(0) possibly_damaging(0.693) TCGA-DD-AADO-01 10 104595084 104595084 C T CYP17A1 Nonsense_Mutation p.W121* 0.40 TCGA-DD-AADO-01 10 105165833 105165833 A T PDCD11 Missense_Mutation p.K219I 0.21 deleterious(0) probably_damaging(0.967) TCGA-DD-AADO-01 10 105677245 105677245 G T OBFC1 Missense_Mutation p.D36E 0.11 tolerated(1) benign(0.001) TCGA-DD-AADO-01 10 115372164 115372164 G A NRAP Silent p.H1109H 0.22 TCGA-DD-AADO-01 10 124358530 124358530 A G DMBT1 Missense_Mutation p.E1066G 0.23 deleterious(0) unknown(0) TCGA-DD-AADO-01 10 1313165 1313165 T C ADARB2 Missense_Mutation p.I393V 0.22 tolerated(0.32) probably_damaging(0.99) TCGA-DD-AADO-01 10 134021385 134021385 C T STK32C 3'UTR 0.39 TCGA-DD-AADO-01 10 15573079 15573079 C T ITGA8 Silent p.Q984Q 0.17 TCGA-DD-AADO-01 10 26513476 26513476 A T GAD2 Missense_Mutation p.Y207F 0.20 deleterious(0.04) possibly_damaging(0.665) TCGA-DD-AADO-01 10 46959890 46959890 T - SYT15 3'Flank 0.10 TCGA-DD-AADO-01 10 5204951 5204951 T G AKR1CL1 Missense_Mutation p.K42N 0.12 deleterious(0.03) possibly_damaging(0.876) TCGA-DD-AADO-01 10 5683744 5683744 T C ASB13 Missense_Mutation p.E233G 0.20 tolerated(0.37) benign(0.173) TCGA-DD-AADO-01 10 61566806 61566806 T A CCDC6 Missense_Mutation p.E293V 0.24 deleterious(0) probably_damaging(0.993) TCGA-DD-AADO-01 11 111591216 111591239 ATGAATGACAGCCCCTCCCTTGAC CTTTA SIK2 Frame_Shift_Del p.M504Lfs*2 0.28 TCGA-DD-AADO-01 11 111591237 111591237 G T SIK2 Missense_Mutation p.D511Y 0.21 deleterious(0) benign(0.305) TCGA-DD-AADO-01 11 111591239 111591239 C - SIK2 Frame_Shift_Del p.D511Efs*16 0.21 TCGA-DD-AADO-01 11 117100406 117100406 G A PCSK7 Missense_Mutation p.P52L 0.19 tolerated(0.53) benign(0) TCGA-DD-AADO-01 11 123676433 123676433 C A OR6M1 Missense_Mutation p.A209S 0.11 tolerated(0.53) benign(0.026) TCGA-DD-AADO-01 11 124135129 124135129 T C OR8G5 Missense_Mutation p.L136P 0.21 deleterious(0) probably_damaging(0.999) TCGA-DD-AADO-01 11 125281718 125281718 A T PKNOX2 Missense_Mutation p.H298L 0.22 tolerated(0.12) benign(0.185) TCGA-DD-AADO-01 11 1271184 1271184 G A MUC5B Silent p.E4358E 0.30 TCGA-DD-AADO-01 11 16077382 16077382 T C SOX6 Silent p.P389P 0.48 TCGA-DD-AADO-01 11 5323008 5323008 T C OR51B4 Missense_Mutation p.M57V 0.29 deleterious(0) probably_damaging(0.983) TCGA-DD-AADO-01 11 55999752 55999752 T A OR5T2 Missense_Mutation p.S304C 0.20 deleterious(0) probably_damaging(0.987) TCGA-DD-AADO-01 11 56114330 56114330 T C OR8K1 Silent p.H272H 0.19 TCGA-DD-AADO-01 11 56143186 56143186 G A OR8U1 Silent p.V29V 0.16 TCGA-DD-AADO-01 11 57148168 57148168 A T PRG3 Nonsense_Mutation p.L5* 0.19 TCGA-DD-AADO-01 11 57946997 57946997 C T OR9Q1 Silent p.L27L 0.11 TCGA-DD-AADO-01 11 60704345 60704345 G A TMEM132A Missense_Mutation p.R1014H 0.35 tolerated(0.14) possibly_damaging(0.907) TCGA-DD-AADO-01 11 66483396 66483396 C A SPTBN2 Missense_Mutation p.A72S 0.05 tolerated(0.27) benign(0.372) TCGA-DD-AADO-01 11 67222916 67222916 G A CABP4 Missense_Mutation p.G8R 0.12 deleterious_low_confidence(0) possibly_damaging(0.459) TCGA-DD-AADO-01 11 69462801 69462801 C T CCND1 Missense_Mutation p.A205V 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-DD-AADO-01 11 75905679 75905679 T A WNT11 Nonsense_Mutation p.K177* 0.25 TCGA-DD-AADO-01 11 78614317 78614317 T G TENM4 Missense_Mutation p.T249P 0.23 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-DD-AADO-01 11 79113092 79113092 T C TENM4 Intron 0.24 TCGA-DD-AADO-01 11 95712390 95712391 AC - MAML2 Frame_Shift_Del p.Q1064Hfs*37 0.19 TCGA-DD-AADO-01 12 101764273 101764273 C G UTP20 Missense_Mutation p.L2207V 0.11 deleterious(0) probably_damaging(0.99) TCGA-DD-AADO-01 12 109719553 109719553 C T FOXN4 Missense_Mutation p.G318D 0.07 tolerated(0.05) benign(0.157) TCGA-DD-AADO-01 12 117768235 117768235 T C NOS1 Missense_Mutation p.S214G 0.15 tolerated_low_confidence(0.45) benign(0) TCGA-DD-AADO-01 12 25656736 25656736 T A IFLTD1 Splice_Site p.X397_splice 0.06 TCGA-DD-AADO-01 12 33030888 33030888 G A PKP2 Missense_Mutation p.A309V 0.23 tolerated(0.16) benign(0.007) TCGA-DD-AADO-01 12 39756972 39756972 T A KIF21A Missense_Mutation p.K316M 0.19 deleterious(0) probably_damaging(0.989) TCGA-DD-AADO-01 12 49745496 49745496 A T DNAJC22 3'UTR 0.44 TCGA-DD-AADO-01 12 52585770 52585770 C T KRT80 5'UTR 0.39 TCGA-DD-AADO-01 12 63328293 63328293 G C PPM1H Missense_Mutation p.P75R 0.24 deleterious(0) probably_damaging(0.998) TCGA-DD-AADO-01 13 113719388 113719388 G A MCF2L Missense_Mutation p.D249N 0.14 tolerated(0.55) benign(0.062) TCGA-DD-AADO-01 13 36049724 36049724 A T MAB21L1 Silent p.A184A 0.24 TCGA-DD-AADO-01 13 36385016 36385016 A G DCLK1 Silent p.C548C 0.21 TCGA-DD-AADO-01 13 46542149 46542149 T A ZC3H13 Nonsense_Mutation p.R1271* 0.21 TCGA-DD-AADO-01 13 47470085 47470085 C A HTR2A 5'UTR 0.26 TCGA-DD-AADO-01 13 99947374 99947374 A G GPR183 Silent p.N342N 0.14 TCGA-DD-AADO-01 14 21239103 21239103 T A EDDM3B 3'UTR 0.36 TCGA-DD-AADO-01 14 39650465 39650470 CAGGAG - PNN In_Frame_Del p.E519_Q520del 0.19 TCGA-DD-AADO-01 14 53244766 53244766 C A GNPNAT1 3'UTR 0.40 TCGA-DD-AADO-01 14 55215638 55215638 C G SAMD4A Missense_Mutation p.A362G 0.38 deleterious(0.01) possibly_damaging(0.891) TCGA-DD-AADO-01 14 65220494 65220494 C T SPTB Silent p.T2121T 0.23 TCGA-DD-AADO-01 14 73750978 73750978 C A NUMB Nonsense_Mutation p.E254* 0.47 TCGA-DD-AADO-01 14 86092273 86092273 A G FLRT2 3'UTR 0.19 TCGA-DD-AADO-01 14 94423206 94423206 G A ASB2 Missense_Mutation p.P73S 0.15 tolerated(0.23) benign(0.004) TCGA-DD-AADO-01 15 33835899 33835902 GAAT - RYR3 Frame_Shift_Del p.N242Ifs*29 0.28 TCGA-DD-AADO-01 15 38990484 38990484 A C C15orf53 Missense_Mutation p.H93P 0.23 deleterious_low_confidence(0.04) possibly_damaging(0.844) TCGA-DD-AADO-01 15 42150939 42150939 G A SPTBN5 Missense_Mutation p.A2696V 0.23 benign(0.024) TCGA-DD-AADO-01 15 51772972 51772972 C G DMXL2 Missense_Mutation p.D2111H 0.09 tolerated(0.24) benign(0.007) TCGA-DD-AADO-01 15 66791736 66791736 T C RPL4 3'UTR 0.13 TCGA-DD-AADO-01 15 77320208 77320208 G T PSTPIP1 Missense_Mutation p.D124Y 0.35 deleterious(0) possibly_damaging(0.702) TCGA-DD-AADO-01 15 79223830 79223830 C T CTSH Missense_Mutation p.D171N 0.38 deleterious(0) probably_damaging(0.999) TCGA-DD-AADO-01 15 81628988 81628988 C G TMC3 Missense_Mutation p.R722T 0.18 deleterious(0.01) possibly_damaging(0.802) TCGA-DD-AADO-01 15 84706565 84706565 G C ADAMTSL3 3'UTR 0.15 TCGA-DD-AADO-01 15 87097621 87097621 A G AGBL1 Silent p.A903A 0.17 TCGA-DD-AADO-01 15 89074816 89074816 C T DET1 Missense_Mutation p.V52M 0.09 tolerated(0.12) benign(0.071) TCGA-DD-AADO-01 15 89453089 89453089 C G MFGE8 Missense_Mutation p.G47R 0.12 deleterious(0.01) probably_damaging(1) TCGA-DD-AADO-01 15 91293034 91293034 G T BLM Missense_Mutation p.R179I 0.12 deleterious(0) possibly_damaging(0.878) TCGA-DD-AADO-01 16 30680998 30680998 A T FBRS 3'UTR 0.46 TCGA-DD-AADO-01 16 30768907 30768907 G T C16orf93 Missense_Mutation p.L296M 0.11 tolerated(0.12) benign(0.184) TCGA-DD-AADO-01 16 30768908 30768908 C T C16orf93 Silent p.G295G 0.11 TCGA-DD-AADO-01 16 348025 348025 G - AXIN1 Frame_Shift_Del p.P494Rfs*211 0.35 TCGA-DD-AADO-01 16 48576816 48576816 C A N4BP1 Nonstop_Mutation p.*897Lext*4 0.52 TCGA-DD-AADO-01 16 71007855 71007855 A C HYDIN Silent p.S1702S 0.08 TCGA-DD-AADO-01 16 72991690 72991690 A G ZFHX3 Silent p.N785N 0.33 TCGA-DD-AADO-01 16 7760818 7760818 A C RBFOX1 3'UTR 0.25 TCGA-DD-AADO-01 16 88502399 88502399 G A ZNF469 Missense_Mutation p.A2813T 0.25 possibly_damaging(0.614) TCGA-DD-AADO-01 16 90128609 90128609 G A PRDM7 Intron 0.28 TCGA-DD-AADO-01 17 21188117 21188117 C T MAP2K3 5'UTR 0.07 TCGA-DD-AADO-01 17 29844766 29844766 C T RAB11FIP4 Missense_Mutation p.A145V 0.19 tolerated(1) benign(0.002) TCGA-DD-AADO-01 17 37228755 37228755 C T PLXDC1 Intron 0.13 TCGA-DD-AADO-01 17 39273935 39273935 A G KRTAP4-11 3'UTR 0.17 TCGA-DD-AADO-01 17 40989684 40989684 A T PSME3 Missense_Mutation p.R88W 0.17 deleterious(0) possibly_damaging(0.647) TCGA-DD-AADO-01 17 45468897 45468897 C G EFCAB13 Nonsense_Mutation p.Y559* 0.19 TCGA-DD-AADO-01 17 5312086 5312086 T C NUP88 Missense_Mutation p.E275G 0.16 deleterious(0.03) benign(0.062) TCGA-DD-AADO-01 17 53798003 53798003 T A TMEM100 3'UTR 0.39 TCGA-DD-AADO-01 17 59560478 59560478 T C TBX4 Silent p.P413P 0.30 TCGA-DD-AADO-01 17 695150 695150 G A RNMTL1 Silent p.Q368Q 0.06 TCGA-DD-AADO-01 17 78397427 78397427 G T ENDOV Nonsense_Mutation p.E171* 0.10 TCGA-DD-AADO-01 17 7906545 7906545 C A GUCY2D Silent p.G60G 0.19 TCGA-DD-AADO-01 17 79090382 79090382 C T BAIAP2 3'UTR 0.28 TCGA-DD-AADO-01 17 79618095 79618095 G A PDE6G 3'UTR 0.24 TCGA-DD-AADO-01 17 80043416 80043416 T A FASN Missense_Mutation p.D1355V 0.13 deleterious(0.02) benign(0.002) TCGA-DD-AADO-01 17 80274230 80274230 G T CD7 Silent p.A151A 0.13 TCGA-DD-AADO-01 17 8215455 8215455 C T ARHGEF15 Missense_Mutation p.S33F 0.38 deleterious_low_confidence(0) benign(0.001) TCGA-DD-AADO-01 17 8363472 8363472 A T NDEL1 Missense_Mutation p.D313V 0.09 deleterious(0.04) possibly_damaging(0.709) TCGA-DD-AADO-01 18 60217605 60217618 ACTTTTGACAAGAC - ZCCHC2 Frame_Shift_Del p.T409Hfs*19 0.16 TCGA-DD-AADO-01 18 60242385 60242385 A T ZCCHC2 Missense_Mutation p.N1024I 0.27 deleterious(0) possibly_damaging(0.549) TCGA-DD-AADO-01 18 66721390 66721390 T G CCDC102B 3'UTR 0.18 TCGA-DD-AADO-01 18 7080342 7080342 C T LAMA1 Missense_Mutation p.R59Q 0.21 tolerated(0.83) possibly_damaging(0.627) TCGA-DD-AADO-01 19 18327687 18327687 A G PDE4C Missense_Mutation p.M450T 0.42 deleterious(0.01) benign(0.136) TCGA-DD-AADO-01 19 18896571 18896571 G A COMP Missense_Mutation p.T527M 0.11 tolerated(0.06) probably_damaging(0.999) TCGA-DD-AADO-01 19 23869892 23869892 G T ZNF675 5'UTR 0.45 TCGA-DD-AADO-01 19 33167015 33167015 C T ANKRD27 5'Flank 0.20 TCGA-DD-AADO-01 19 36256011 36256011 G A C19orf55 Missense_Mutation p.G235S 0.24 deleterious(0.01) probably_damaging(0.941) TCGA-DD-AADO-01 19 36592199 36592199 A T WDR62 Missense_Mutation p.K984M 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-DD-AADO-01 19 37678065 37678065 G A ZNF585B Missense_Mutation p.S125F 0.32 deleterious(0.04) benign(0.033) TCGA-DD-AADO-01 19 38377640 38377640 T C WDR87 Missense_Mutation p.E2185G 0.21 benign(0.129) TCGA-DD-AADO-01 19 38380578 38380578 T C WDR87 Missense_Mutation p.T1206A 0.14 benign(0.005) TCGA-DD-AADO-01 19 39075613 39075613 C T RYR1 Missense_Mutation p.R4893W 0.36 benign(0.133) TCGA-DD-AADO-01 19 3907814 3907814 C T ATCAY Silent p.S147S 0.15 TCGA-DD-AADO-01 19 39819668 39819668 C T GMFG Missense_Mutation p.R110K 0.20 tolerated(1) benign(0.01) TCGA-DD-AADO-01 19 42729783 42729783 G T ZNF526 Missense_Mutation p.A410S 0.21 tolerated(0.33) benign(0.029) TCGA-DD-AADO-01 19 47423310 47423310 A G ARHGAP35 Missense_Mutation p.M460V 0.15 deleterious(0.02) benign(0.338) TCGA-DD-AADO-01 19 53885958 53885958 G T ZNF525 3'UTR 0.35 TCGA-DD-AADO-01 19 54866837 54866837 A G LAIR1 3'UTR 0.39 TCGA-DD-AADO-01 19 55147588 55147588 T C AC009892.10 Intron 0.20 TCGA-DD-AADO-01 19 55743228 55743228 G C PPP6R1 Missense_Mutation p.Q750E 0.32 tolerated(0.65) benign(0.007) TCGA-DD-AADO-01 19 9076752 9076752 T A MUC16 Missense_Mutation p.D3565V 0.18 unknown(0) TCGA-DD-AADO-01 19 9083709 9083709 T G MUC16 Silent p.V2702V 0.05 TCGA-DD-AADO-01 1 101006729 101006729 G T GPR88 3'UTR 0.19 TCGA-DD-AADO-01 1 104112621 104112621 G A AMY2B Intron 0.13 TCGA-DD-AADO-01 1 12939708 12939708 A C PRAMEF4 Missense_Mutation p.I365R 0.30 tolerated(0.42) benign(0.029) TCGA-DD-AADO-01 1 144886226 144886226 T G PDE4DIP Missense_Mutation p.Q1003P 0.12 tolerated(0.12) benign(0.004) TCGA-DD-AADO-01 1 147091411 147091412 - G BCL9 Frame_Shift_Ins p.R485Efs*39 0.09 TCGA-DD-AADO-01 1 151315082 151315082 C T RFX5 Silent p.G477G 0.11 TCGA-DD-AADO-01 1 152083480 152083480 T A TCHH Missense_Mutation p.K738M 0.06 unknown(0) TCGA-DD-AADO-01 1 152188215 152188215 A T HRNR Missense_Mutation p.Y1964N 0.03 unknown(0) TCGA-DD-AADO-01 1 152280916 152280916 C T FLG Missense_Mutation p.R2149K 0.13 benign(0.067) TCGA-DD-AADO-01 1 156851354 156851354 C T NTRK1 Missense_Mutation p.R771C 0.12 deleterious(0) probably_damaging(1) TCGA-DD-AADO-01 1 158061204 158061204 G T KIRREL Silent p.V443V 0.52 TCGA-DD-AADO-01 1 161163059 161163059 A C ADAMTS4 Missense_Mutation p.C619G 0.08 deleterious(0) probably_damaging(0.998) TCGA-DD-AADO-01 1 162551100 162551100 G A UAP1 Missense_Mutation p.A229T 0.13 deleterious(0) probably_damaging(0.999) TCGA-DD-AADO-01 1 163038944 163038944 T A RGS4 Intron 0.14 TCGA-DD-AADO-01 1 164776788 164776788 A G PBX1 Silent p.R237R 0.15 TCGA-DD-AADO-01 1 165738099 165738099 C G TMCO1 Missense_Mutation p.G15R 0.15 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-DD-AADO-01 1 165865569 165865569 G A UCK2 Missense_Mutation p.V167I 0.13 tolerated(0.19) probably_damaging(0.994) TCGA-DD-AADO-01 1 168215839 168215839 C T SFT2D2 3'UTR 0.14 TCGA-DD-AADO-01 1 171605162 171605162 T A MYOC Missense_Mutation p.Y473F 0.10 deleterious(0) probably_damaging(0.998) TCGA-DD-AADO-01 1 17296811 17296811 G A CROCC Missense_Mutation p.E1839K 0.16 possibly_damaging(0.502) TCGA-DD-AADO-01 1 173176191 173176191 T G TNFSF4 Missense_Mutation p.Y42S 0.52 deleterious(0) possibly_damaging(0.659) TCGA-DD-AADO-01 1 173839522 173839522 C G ZBTB37 Missense_Mutation p.S53R 0.13 deleterious(0) probably_damaging(0.983) TCGA-DD-AADO-01 1 179815788 179815788 T A TOR1AIP2 Silent p.G277G 0.11 TCGA-DD-AADO-01 1 184764664 184764664 T A FAM129A Missense_Mutation p.E745V 0.12 deleterious_low_confidence(0.03) benign(0.161) TCGA-DD-AADO-01 1 205197574 205197574 A G TMCC2 5'UTR 0.17 TCGA-DD-AADO-01 1 210414923 210414923 A G SERTAD4 Silent p.E104E 0.13 TCGA-DD-AADO-01 1 214814115 214814115 A C CENPF Missense_Mutation p.S812R 0.13 possibly_damaging(0.483) TCGA-DD-AADO-01 1 220364508 220364508 T C RAB3GAP2 Silent p.Q463Q 0.15 TCGA-DD-AADO-01 1 22418046 22418046 C T CDC42 3'UTR 0.37 TCGA-DD-AADO-01 1 226030084 226030084 T A EPHX1 Missense_Mutation p.S317T 0.12 deleterious(0) probably_damaging(0.981) TCGA-DD-AADO-01 1 242511470 242511470 G A PLD5 Silent p.A88A 0.34 TCGA-DD-AADO-01 1 244217368 244217368 T C ZBTB18 Missense_Mutation p.F98L 0.37 tolerated(0.52) benign(0.425) TCGA-DD-AADO-01 1 248039449 248039449 C T TRIM58 Silent p.T373T 0.12 TCGA-DD-AADO-01 1 43638006 43638006 C T EBNA1BP2 Silent p.P29P 0.40 TCGA-DD-AADO-01 1 62916046 62916046 T C USP1 Silent p.H584H 0.03 TCGA-DD-AADO-01 1 86289219 86289219 T C COL24A1 Silent p.E1263E 0.24 TCGA-DD-AADO-01 1 9713824 9713824 G C C1orf200 3'UTR 0.32 TCGA-DD-AADO-01 1 98015267 98015267 C T DPYD Missense_Mutation p.R458K 0.21 tolerated(0.64) benign(0) TCGA-DD-AADO-01 1 99470238 99470238 C T LPPR5 5'UTR 0.14 TCGA-DD-AADO-01 20 2593864 2593864 G A TMC2 Missense_Mutation p.D590N 0.33 deleterious(0) probably_damaging(1) TCGA-DD-AADO-01 20 30193892 30193892 C A ID1 Missense_Mutation p.R155S 0.27 deleterious(0) possibly_damaging(0.605) TCGA-DD-AADO-01 20 39802780 39802780 T G PLCG1 Missense_Mutation p.L1221R 0.45 deleterious(0.02) benign(0.177) TCGA-DD-AADO-01 20 6100146 6100146 T C FERMT1 Missense_Mutation p.D19G 0.17 tolerated(0.39) benign(0.187) TCGA-DD-AADO-01 21 10933910 10933910 A C TPTE Missense_Mutation p.N323K 0.07 tolerated(0.86) benign(0.017) TCGA-DD-AADO-01 21 19715849 19715849 T A TMPRSS15 Missense_Mutation p.T468S 0.34 deleterious(0.02) probably_damaging(0.993) TCGA-DD-AADO-01 21 22906918 22906918 T A NCAM2 Missense_Mutation p.N781K 0.42 deleterious(0) benign(0.108) TCGA-DD-AADO-01 21 31993016 31993016 G A KRTAP20-4 Missense_Mutation p.G14S 0.15 probably_damaging(0.934) TCGA-DD-AADO-01 21 33370991 33370991 A T HUNK Missense_Mutation p.I547F 0.30 tolerated_low_confidence(0.73) benign(0.07) TCGA-DD-AADO-01 21 38850602 38850602 G C DYRK1A Missense_Mutation p.E109D 0.19 deleterious(0.03) benign(0.188) TCGA-DD-AADO-01 21 45076519 45076519 G A HSF2BP Silent p.L46L 0.33 TCGA-DD-AADO-01 21 46047944 46047944 T A KRTAP10-9 Missense_Mutation p.S286T 0.17 tolerated(0.07) benign(0.418) TCGA-DD-AADO-01 21 47602716 47602716 G A SPATC1L Silent p.G5G 0.16 TCGA-DD-AADO-01 22 17308725 17308725 T C HSFY1P1 RNA 0.20 TCGA-DD-AADO-01 22 17472883 17472883 T C GAB4 Missense_Mutation p.M120V 0.17 tolerated(1) benign(0.22) TCGA-DD-AADO-01 22 22385730 22385730 T C IGLV4-69 Silent p.D73D 0.14 TCGA-DD-AADO-01 22 30977601 30977601 C G PES1 Missense_Mutation p.A221P 0.20 deleterious(0.02) probably_damaging(0.997) TCGA-DD-AADO-01 22 42981649 42981649 T C POLDIP3 3'UTR 0.38 TCGA-DD-AADO-01 22 48940651 48940651 T A CTA-299D3.8 Missense_Mutation p.E53V 0.11 possibly_damaging(0.617) TCGA-DD-AADO-01 2 101650198 101650198 T C TBC1D8 Silent p.S527S 0.21 TCGA-DD-AADO-01 2 109384438 109384438 T C RANBP2 Silent p.D2481D 0.21 TCGA-DD-AADO-01 2 11777860 11777860 G T GREB1 Missense_Mutation p.A1789S 0.07 tolerated(0.59) possibly_damaging(0.518) TCGA-DD-AADO-01 2 15676636 15676636 C T NBAS Missense_Mutation p.G185R 0.07 deleterious(0) probably_damaging(0.994) TCGA-DD-AADO-01 2 166243456 166243456 T C SCN2A Silent p.S1584S 0.09 TCGA-DD-AADO-01 2 166605296 166605296 C G GALNT3 Missense_Mutation p.D633H 0.65 deleterious_low_confidence(0.02) benign(0.241) TCGA-DD-AADO-01 2 168727107 168727107 A G B3GALT1 3'UTR 0.28 TCGA-DD-AADO-01 2 176794602 176794602 T G KIAA1715 3'UTR 0.41 TCGA-DD-AADO-01 2 178257498 178257498 G C AGPS 5'UTR 0.13 TCGA-DD-AADO-01 2 18765411 18765411 A T NT5C1B Nonsense_Mutation p.Y338* 0.15 TCGA-DD-AADO-01 2 189876697 189876697 T C COL3A1 3'UTR 0.14 TCGA-DD-AADO-01 2 191819351 191819351 A T GLS Missense_Mutation p.D585V 0.18 deleterious(0) probably_damaging(0.996) TCGA-DD-AADO-01 2 196620956 196620956 A G DNAH7 Silent p.N3829N 0.14 TCGA-DD-AADO-01 2 196774843 196774843 T A DNAH7 Missense_Mutation p.T1338S 0.12 tolerated(0.07) probably_damaging(0.99) TCGA-DD-AADO-01 2 209353870 209353870 T A PTH2R Missense_Mutation p.F404I 0.09 deleterious(0.02) probably_damaging(1) TCGA-DD-AADO-01 2 220505246 220505246 T C SLC4A3 Silent p.G1151G 0.06 TCGA-DD-AADO-01 2 225642958 225642958 T A DOCK10 Missense_Mutation p.E1900V 0.12 deleterious(0) probably_damaging(0.928) TCGA-DD-AADO-01 2 225684228 225684228 C T DOCK10 Missense_Mutation p.D1068N 0.17 tolerated(0.09) benign(0.076) TCGA-DD-AADO-01 2 242814682 242814682 G A CXXC11 Silent p.V325V 0.15 TCGA-DD-AADO-01 2 26502110 26502110 G A HADHB Silent p.L246L 0.12 TCGA-DD-AADO-01 2 48692100 48692100 A C PPP1R21 Missense_Mutation p.N240T 0.10 deleterious(0) probably_damaging(0.999) TCGA-DD-AADO-01 2 51254823 51254823 C T NRXN1 Missense_Mutation p.V197M 0.15 tolerated(0.11) benign(0.017) TCGA-DD-AADO-01 2 61258830 61258830 A G PEX13 Silent p.E123E 0.33 TCGA-DD-AADO-01 2 74752644 74752644 C T DQX1 Silent p.E71E 0.19 TCGA-DD-AADO-01 2 79254956 79254956 A C REG3G Silent p.G119G 0.26 TCGA-DD-AADO-01 2 99242216 99242216 C A MGAT4A Missense_Mutation p.Q517H 0.18 deleterious(0.01) benign(0.001) TCGA-DD-AADO-01 3 111710309 111710309 T A ABHD10 Missense_Mutation p.F221Y 0.27 deleterious(0) possibly_damaging(0.644) TCGA-DD-AADO-01 3 112357345 112357345 T C CCDC80 Missense_Mutation p.R470G 0.43 deleterious(0) benign(0.214) TCGA-DD-AADO-01 3 118753486 118753486 A G IGSF11 5'UTR 0.24 TCGA-DD-AADO-01 3 119530393 119530393 G C NR1I2 Missense_Mutation p.M152I 0.19 deleterious(0.01) benign(0.276) TCGA-DD-AADO-01 3 119530394 119530394 T A NR1I2 Missense_Mutation p.S153T 0.20 tolerated(0.45) possibly_damaging(0.601) TCGA-DD-AADO-01 3 122002614 122002614 T C CASR Missense_Mutation p.F615L 0.09 deleterious(0) benign(0.265) TCGA-DD-AADO-01 3 123674900 123674900 T C CCDC14 Silent p.E122E 0.10 TCGA-DD-AADO-01 3 135870012 135870012 T C MSL2 Missense_Mutation p.I571V 0.21 deleterious(0.01) benign(0.037) TCGA-DD-AADO-01 3 15300443 15300443 G C SH3BP5 Missense_Mutation p.R262G 0.16 deleterious(0.05) possibly_damaging(0.564) TCGA-DD-AADO-01 3 154878219 154878219 T A MME Missense_Mutation p.S548T 0.22 tolerated(0.09) benign(0.007) TCGA-DD-AADO-01 3 171320740 171320740 T A PLD1 3'UTR 0.33 TCGA-DD-AADO-01 3 186790725 186790725 A G ST6GAL1 Missense_Mutation p.D265G 0.24 benign(0.411) TCGA-DD-AADO-01 3 192992998 192992998 G C ATP13A5 Missense_Mutation p.L1164V 0.23 tolerated(0.07) benign(0.098) TCGA-DD-AADO-01 3 197765611 197765611 G A LMLN 3'UTR 0.20 TCGA-DD-AADO-01 3 23932096 23932096 A G UBE2E1 Silent p.%3D 0.27 TCGA-DD-AADO-01 3 33908095 33908095 A G PDCD6IP 3'UTR 0.19 TCGA-DD-AADO-01 3 38739345 38739345 T C SCN10A Missense_Mutation p.D1789G 0.29 deleterious(0) probably_damaging(1) TCGA-DD-AADO-01 3 47161750 47161751 - CCATT SETD2 Frame_Shift_Ins p.R1459Qfs*26 0.27 TCGA-DD-AADO-01 3 49162520 49162520 T C LAMB2 Missense_Mutation p.S935G 0.29 deleterious(0.04) benign(0.107) TCGA-DD-AADO-01 3 52011894 52011894 T A ABHD14A Missense_Mutation p.V26E 0.20 deleterious_low_confidence(0) benign(0.193) TCGA-DD-AADO-01 3 52255355 52255355 G A TLR9 Missense_Mutation p.L1147F 0.27 deleterious(0) probably_damaging(0.999) TCGA-DD-AADO-01 3 56468944 56468944 C A ERC2 Missense_Mutation p.R31I 0.20 deleterious(0) probably_damaging(0.974) TCGA-DD-AADO-01 3 87313643 87313643 A G POU1F1 Silent p.L104L 0.17 TCGA-DD-AADO-01 4 140309383 140309383 C A NAA15 3'UTR 0.33 TCGA-DD-AADO-01 4 141677242 141677242 C G TBC1D9 5'UTR 0.18 TCGA-DD-AADO-01 4 162307147 162307147 C T FSTL5 Missense_Mutation p.V766M 0.32 deleterious(0.01) probably_damaging(0.962) TCGA-DD-AADO-01 4 165879084 165879084 T C FAM218A 3'UTR 0.05 TCGA-DD-AADO-01 4 177190143 177190143 A G ASB5 Silent p.S39S 0.04 TCGA-DD-AADO-01 4 187004594 187004594 T C TLR3 Missense_Mutation p.L585S 0.11 deleterious(0) probably_damaging(1) TCGA-DD-AADO-01 4 20598128 20598128 C T SLIT2 Silent p.I1137I 0.24 TCGA-DD-AADO-01 4 47465616 47465616 T A COMMD8 Missense_Mutation p.E18V 0.20 tolerated(0.05) possibly_damaging(0.719) TCGA-DD-AADO-01 4 56502369 56502369 T A NMU 5'UTR 0.29 TCGA-DD-AADO-01 4 85701395 85701395 C G WDFY3 Missense_Mutation p.A1411P 0.32 deleterious(0.01) benign(0.008) TCGA-DD-AADO-01 4 89689194 89689194 T G FAM13A Missense_Mutation p.N492T 0.24 tolerated(0.21) benign(0.004) TCGA-DD-AADO-01 5 131939173 131939173 A G RAD50 Missense_Mutation p.R797G 0.36 deleterious(0.01) probably_damaging(0.93) TCGA-DD-AADO-01 5 138209107 138209107 A G LRRTM2 Silent p.Y381Y 0.11 TCGA-DD-AADO-01 5 138994470 138994470 C A UBE2D2 Missense_Mutation p.H75N 0.51 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-DD-AADO-01 5 138994471 138994471 A T UBE2D2 Missense_Mutation p.H75L 0.51 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-DD-AADO-01 5 139908805 139908810 ATGTCA - ANKHD1 In_Frame_Del p.S2093_M2094del 0.12 TCGA-DD-AADO-01 5 139917018 139917018 G T ANKHD1 Missense_Mutation p.A2358S 0.49 benign(0.012) TCGA-DD-AADO-01 5 140232475 140232475 T G PCDHA9 Intron 0.59 TCGA-DD-AADO-01 5 140237595 140237595 C G PCDHA10 Silent p.G654G 0.22 TCGA-DD-AADO-01 5 140557499 140557499 A G PCDHB8 5'UTR 0.09 TCGA-DD-AADO-01 5 140797663 140797663 G T PCDHGB7 Silent p.A79A 0.38 TCGA-DD-AADO-01 5 143853381 143853381 G T KCTD16 Missense_Mutation p.G331C 0.19 tolerated(0.07) probably_damaging(0.921) TCGA-DD-AADO-01 5 147450013 147450013 T G SPINK5 Missense_Mutation p.L70R 0.06 deleterious(0) probably_damaging(0.998) TCGA-DD-AADO-01 5 169533520 169533520 G A FOXI1 Missense_Mutation p.D187N 0.30 deleterious(0) possibly_damaging(0.879) TCGA-DD-AADO-01 5 171639023 171639023 G A UBTD2 Silent p.D172D 0.09 TCGA-DD-AADO-01 5 176019770 176019770 C G CDHR2 Missense_Mutation p.Q1261E 0.47 tolerated(0.82) benign(0.001) TCGA-DD-AADO-01 5 176825423 176825423 T A SLC34A1 3'UTR 0.40 TCGA-DD-AADO-01 5 177019635 177019635 G T TMED9 Missense_Mutation p.G82W 0.52 tolerated(0.09) benign(0.12) TCGA-DD-AADO-01 5 177547301 177547301 G T N4BP3 Silent p.T151T 0.19 TCGA-DD-AADO-01 5 178043910 178043910 T G CLK4 Missense_Mutation p.K172T 0.21 deleterious(0) possibly_damaging(0.867) TCGA-DD-AADO-01 5 36986168 36986168 G A NIPBL Silent p.K962K 0.19 TCGA-DD-AADO-01 5 61875597 61875597 A G LRRC70 Missense_Mutation p.Y111C 0.13 tolerated(0.23) benign(0.007) TCGA-DD-AADO-01 5 71756336 71756336 G A ZNF366 Nonsense_Mutation p.Q330* 0.32 TCGA-DD-AADO-01 6 153019044 153019044 A G MYCT1 Missense_Mutation p.T3A 0.17 tolerated_low_confidence(0.06) benign(0.011) TCGA-DD-AADO-01 6 168442707 168442707 A T KIF25 Silent p.G235G 0.15 TCGA-DD-AADO-01 6 168457745 168457745 C T FRMD1 3'UTR 0.38 TCGA-DD-AADO-01 6 168910605 168910605 T C SMOC2 Missense_Mutation p.V32A 0.19 tolerated(0.12) possibly_damaging(0.661) TCGA-DD-AADO-01 6 170844212 170844212 T C PSMB1 3'UTR 0.24 TCGA-DD-AADO-01 6 19838106 19838108 GCG - ID4 In_Frame_Del p.A48del 0.20 TCGA-DD-AADO-01 6 30122220 30122220 G T TRIM10 Silent p.L324L 0.08 TCGA-DD-AADO-01 6 32160279 32160279 C T GPSM3 Silent p.E4E 0.11 TCGA-DD-AADO-01 6 33239255 33239255 T A VPS52 Intron 0.13 TCGA-DD-AADO-01 6 33652240 33652240 C T ITPR3 Missense_Mutation p.R1682W 0.09 deleterious(0.04) possibly_damaging(0.65) TCGA-DD-AADO-01 6 34835317 34835317 C T UHRF1BP1 Silent p.A1214A 0.15 TCGA-DD-AADO-01 6 36922482 36922482 C G PI16 5'UTR 0.17 TCGA-DD-AADO-01 6 43492932 43492932 T C XPO5 Silent p.L1029L 0.16 TCGA-DD-AADO-01 6 56342211 56342211 T C DST Missense_Mutation p.I4580V 0.16 benign(0.015) TCGA-DD-AADO-01 6 57012444 57012444 C T ZNF451 Missense_Mutation p.H521Y 0.18 deleterious(0) probably_damaging(0.993) TCGA-DD-AADO-01 6 72967920 72967920 T C RIMS1 Missense_Mutation p.S955P 0.29 deleterious(0.04) probably_damaging(0.995) TCGA-DD-AADO-01 6 75843108 75843108 T A COL12A1 Missense_Mutation p.I1899F 0.28 possibly_damaging(0.799) TCGA-DD-AADO-01 6 76596595 76596595 A G MYO6 Missense_Mutation p.K848E 0.14 tolerated(0.61) unknown(0) TCGA-DD-AADO-01 6 76599977 76599977 G A MYO6 Silent p.R954R 0.15 TCGA-DD-AADO-01 6 8102760 8102760 G A EEF1E1 5'UTR 0.24 TCGA-DD-AADO-01 6 96653640 96653640 T C FUT9 3'UTR 0.12 TCGA-DD-AADO-01 7 100246398 100246398 G A ACTL6B Silent p.T172T 0.17 TCGA-DD-AADO-01 7 100334233 100334233 C T ZAN Silent p.P78P 0.17 TCGA-DD-AADO-01 7 103801580 103801580 T C ORC5 Silent p.L363L 0.20 TCGA-DD-AADO-01 7 121985695 121985695 A T CADPS2 Missense_Mutation p.V1182D 0.19 deleterious(0) possibly_damaging(0.836) TCGA-DD-AADO-01 7 126883030 126883030 C T GRM8 Missense_Mutation p.E77K 0.28 deleterious(0) probably_damaging(0.992) TCGA-DD-AADO-01 7 131113817 131113817 G A MKLN1 Nonsense_Mutation p.W291* 0.27 TCGA-DD-AADO-01 7 142640570 142640570 T C KEL Intron 0.19 TCGA-DD-AADO-01 7 149481932 149481932 G A SSPO RNA 0.19 TCGA-DD-AADO-01 7 150713250 150713250 C T ATG9B Missense_Mutation p.S864N 0.06 deleterious(0.05) probably_damaging(0.997) TCGA-DD-AADO-01 7 22985357 22985357 C T FAM126A Missense_Mutation p.G473R 0.27 tolerated(0.44) benign(0.002) TCGA-DD-AADO-01 7 26232908 26232908 A G HNRNPA2B1 Silent p.F321F 0.31 TCGA-DD-AADO-01 7 27149809 27149809 C T HOXA3 Missense_Mutation p.V151M 0.12 tolerated(0.14) benign(0.001) TCGA-DD-AADO-01 7 38783021 38783021 T G VPS41 Missense_Mutation p.L701F 0.10 deleterious(0.05) possibly_damaging(0.447) TCGA-DD-AADO-01 7 42972003 42972003 G A MRPL32 Silent p.L6L 0.40 TCGA-DD-AADO-01 7 7571326 7571326 T G COL28A1 Missense_Mutation p.K112Q 0.21 tolerated(0.29) possibly_damaging(0.745) TCGA-DD-AADO-01 7 83037794 83037794 A T SEMA3E Nonsense_Mutation p.L187* 0.18 TCGA-DD-AADO-01 7 91726119 91726119 G T AKAP9 Missense_Mutation p.M3282I 0.15 benign(0.002) TCGA-DD-AADO-01 7 95125087 95125087 T C ASB4 Missense_Mutation p.Y69H 0.16 deleterious(0) probably_damaging(0.998) TCGA-DD-AADO-01 8 100115264 100115264 G T VPS13B Missense_Mutation p.D166Y 0.07 deleterious(0) probably_damaging(0.953) TCGA-DD-AADO-01 8 100874106 100874106 G A VPS13B Missense_Mutation p.R3741Q 0.19 deleterious(0) possibly_damaging(0.553) TCGA-DD-AADO-01 8 104415433 104415433 C G SLC25A32 Missense_Mutation p.V171L 0.09 tolerated(0.69) benign(0.004) TCGA-DD-AADO-01 8 108296966 108296966 G C ANGPT1 Missense_Mutation p.N383K 0.05 deleterious(0.01) benign(0.171) TCGA-DD-AADO-01 8 110567069 110567069 C A EBAG9 Missense_Mutation p.P92T 0.30 tolerated(0.15) possibly_damaging(0.57) TCGA-DD-AADO-01 8 126079914 126079914 G A KIAA0196 Silent p.L400L 0.11 TCGA-DD-AADO-01 8 25154121 25154121 A T DOCK5 Missense_Mutation p.E188V 0.22 tolerated(0.06) probably_damaging(0.999) TCGA-DD-AADO-01 8 39564351 39564351 A C ADAM18 Silent p.R649R 0.61 TCGA-DD-AADO-01 8 67547274 67547274 C T VCPIP1 Missense_Mutation p.R1044K 0.27 tolerated_low_confidence(0.41) benign(0.001) TCGA-DD-AADO-01 8 73958317 73958317 A G TERF1 Missense_Mutation p.D422G 0.48 deleterious(0) probably_damaging(1) TCGA-DD-AADO-01 8 87683169 87683169 T A CNGB3 Intron 0.17 TCGA-DD-AADO-01 8 90996753 90996753 C A NBN Nonsense_Mutation p.G13* 0.12 TCGA-DD-AADO-01 8 93026961 93026961 G A RUNX1T1 Missense_Mutation p.S116F 0.18 deleterious(0.02) possibly_damaging(0.845) TCGA-DD-AADO-01 8 93088272 93088272 A T RUNX1T1 Intron 0.13 TCGA-DD-AADO-01 9 103092453 103092453 T C TEX10 Splice_Site p.X417_splice 0.40 TCGA-DD-AADO-01 9 127685404 127685404 C A GOLGA1 Missense_Mutation p.Q177H 0.47 deleterious(0) probably_damaging(0.999) TCGA-DD-AADO-01 9 5335511 5335511 C T RLN1 Missense_Mutation p.A100T 0.08 tolerated(0.2) benign(0.01) TCGA-DD-AADO-01 9 5920853 5920853 T C KIAA2026 Missense_Mutation p.T1715A 0.10 tolerated(0.17) probably_damaging(0.971) TCGA-DD-AADO-01 9 5968486 5968487 - T KIAA2026 Frame_Shift_Ins p.T582Nfs*2 0.35 TCGA-DD-AADO-01 9 77386661 77386661 A G TRPM6 Missense_Mutation p.V1165A 0.65 tolerated(0.14) benign(0.028) TCGA-DD-AADO-01 X 151997125 151997125 C T CETN2 Missense_Mutation p.V129M 0.33 deleterious(0.04) possibly_damaging(0.655) TCGA-DD-AADO-01 X 30871043 30871043 T C TAB3 Missense_Mutation p.H521R 0.57 deleterious(0) possibly_damaging(0.904) TCGA-DD-AADO-01 X 85218702 85218702 C A CHM Missense_Mutation p.G224C 0.37 deleterious(0.01) probably_damaging(1) TCGA-DD-AADO-01 X 90691480 90691480 G C PABPC5 Missense_Mutation p.V302L 0.33 deleterious(0.02) benign(0.15) TCGA-DD-AADP-01 10 103292148 103292148 G A BTRC Missense_Mutation p.D313N 0.23 deleterious(0) benign(0.39) TCGA-DD-AADP-01 10 15256459 15256459 C T FAM171A1 Silent p.P376P 0.29 TCGA-DD-AADP-01 10 18429625 18429625 G C CACNB2 5'UTR 0.42 TCGA-DD-AADP-01 10 20290907 20290907 C T PLXDC2 Nonsense_Mutation p.Q106* 0.35 TCGA-DD-AADP-01 10 23235105 23235105 A T ARMC3 Silent p.A27A 0.29 TCGA-DD-AADP-01 10 38344426 38344426 A G ZNF33A Silent p.V458V 0.33 TCGA-DD-AADP-01 10 75936527 75936527 T A ADK Intron 0.33 TCGA-DD-AADP-01 10 76790996 76790996 T A KAT6B 3'UTR 0.38 TCGA-DD-AADP-01 10 93619284 93619284 A G TNKS2 Missense_Mutation p.M1054V 0.30 deleterious(0) benign(0.001) TCGA-DD-AADP-01 11 108205694 108205694 A T ATM Splice_Site p.X2671_splice 0.56 TCGA-DD-AADP-01 11 46744939 46744939 T C F2 Missense_Mutation p.S144P 0.36 tolerated(0.55) benign(0.008) TCGA-DD-AADP-01 11 55563878 55563878 G T OR5D14 Missense_Mutation p.V283F 0.31 deleterious(0.01) possibly_damaging(0.468) TCGA-DD-AADP-01 11 55703216 55703216 A G OR5I1 Missense_Mutation p.F221L 0.30 tolerated(1) benign(0.089) TCGA-DD-AADP-01 11 99715605 99715605 T C CNTN5 Missense_Mutation p.V100A 0.59 tolerated(0.05) probably_damaging(0.918) TCGA-DD-AADP-01 12 110433993 110433993 C G GIT2 Missense_Mutation p.D13H 0.42 deleterious(0) possibly_damaging(0.886) TCGA-DD-AADP-01 12 118588895 118588895 T A TAOK3 Missense_Mutation p.Q868H 0.45 tolerated(0.32) benign(0.196) TCGA-DD-AADP-01 12 118588900 118588900 T A TAOK3 Missense_Mutation p.R867W 0.44 deleterious(0) probably_damaging(0.963) TCGA-DD-AADP-01 12 133502153 133502153 T C ZNF605 Missense_Mutation p.I609V 0.42 tolerated(0.57) benign(0.052) TCGA-DD-AADP-01 12 57009334 57009334 G A BAZ2A Missense_Mutation p.S67L 0.50 deleterious(0.01) probably_damaging(0.985) TCGA-DD-AADP-01 12 57348907 57348907 T C RDH16 Missense_Mutation p.T119A 0.38 tolerated(0.52) benign(0.003) TCGA-DD-AADP-01 12 58114880 58114880 C G OS9 3'UTR 0.29 TCGA-DD-AADP-01 12 7548802 7548802 G T CD163L1 Missense_Mutation p.L647I 0.32 deleterious(0.03) probably_damaging(0.976) TCGA-DD-AADP-01 13 101077934 101077934 G T PCCA Silent p.L598L 0.46 TCGA-DD-AADP-01 13 53422433 53422433 C T PCDH8 Missense_Mutation p.G47R 0.51 deleterious(0) probably_damaging(0.997) TCGA-DD-AADP-01 14 24658032 24658032 A T IPO4 5'UTR 0.29 TCGA-DD-AADP-01 14 33290708 33290708 G T AKAP6 Missense_Mutation p.S1230I 0.26 deleterious(0) probably_damaging(0.997) TCGA-DD-AADP-01 14 45658071 45658071 G A FANCM Missense_Mutation p.G1616S 0.34 tolerated(1) benign(0) TCGA-DD-AADP-01 14 74727375 74727375 T C VSX2 Missense_Mutation p.L280P 0.36 tolerated(0.3) benign(0.001) TCGA-DD-AADP-01 14 95932451 95932451 C T SYNE3 Silent p.E148E 0.36 TCGA-DD-AADP-01 15 40313196 40313196 A G EIF2AK4 Missense_Mutation p.I1424V 0.41 tolerated(0.29) benign(0.06) TCGA-DD-AADP-01 15 56385746 56385746 T C RFX7 Missense_Mutation p.I1394V 0.35 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-DD-AADP-01 15 63908787 63908787 G T HERC1 Missense_Mutation p.P4595T 0.07 probably_damaging(1) TCGA-DD-AADP-01 15 65054600 65054600 A G RBPMS2 Intron 0.24 TCGA-DD-AADP-01 16 31153852 31153852 G T PRSS36 Missense_Mutation p.H491N 0.65 tolerated(0.32) benign(0.102) TCGA-DD-AADP-01 16 347861 347861 G A AXIN1 Nonsense_Mutation p.Q549* 0.66 TCGA-DD-AADP-01 16 89922083 89922083 C G SPIRE2 Missense_Mutation p.P323A 0.66 deleterious(0) probably_damaging(1) TCGA-DD-AADP-01 17 1359301 1359301 C T CRK Silent p.V37V 0.33 TCGA-DD-AADP-01 17 1630159 1630159 C T WDR81 Missense_Mutation p.P636S 0.49 tolerated(0.62) benign(0.029) TCGA-DD-AADP-01 17 2593654 2593654 G A CLUH 3'UTR 0.36 TCGA-DD-AADP-01 17 34071729 34071729 G T GAS2L2 3'UTR 0.39 TCGA-DD-AADP-01 17 39538463 39538463 G C KRT34 Missense_Mutation p.C54W 0.29 tolerated(0.05) possibly_damaging(0.873) TCGA-DD-AADP-01 17 42463044 42463044 G T ITGA2B Missense_Mutation p.T150N 0.38 tolerated(0.55) benign(0.001) TCGA-DD-AADP-01 17 5463296 5463296 C T NLRP1 Silent p.T240T 0.37 TCGA-DD-AADP-01 17 65343236 65343236 T A PSMD12 Missense_Mutation p.Q264L 0.25 tolerated(0.12) benign(0.039) TCGA-DD-AADP-01 17 65485 65485 G A RPH3AL Missense_Mutation p.P279L 0.42 deleterious(0.04) benign(0.012) TCGA-DD-AADP-01 17 76968132 76968132 T G LGALS3BP Silent p.S428S 0.39 TCGA-DD-AADP-01 18 2697978 2697978 C T SMCHD1 Silent p.I427I 0.41 TCGA-DD-AADP-01 18 52927189 52927189 A G TCF4 Missense_Mutation p.S456P 0.35 tolerated(1) benign(0.106) TCGA-DD-AADP-01 18 65178398 65178398 A G DSEL Missense_Mutation p.S1160P 0.34 tolerated(0.29) benign(0.012) TCGA-DD-AADP-01 19 12691167 12691167 C T ZNF490 3'UTR 0.46 TCGA-DD-AADP-01 19 1923053 1923071 CTCTTGTCCCTTGCAGCGG - SCAMP4 Splice_Site p.X132_splice 0.41 TCGA-DD-AADP-01 19 30935118 30935118 C A ZNF536 Missense_Mutation p.L217M 0.46 deleterious(0.03) probably_damaging(0.998) TCGA-DD-AADP-01 19 30936398 30936398 C G ZNF536 Nonsense_Mutation p.Y643* 0.32 TCGA-DD-AADP-01 19 3590232 3590232 C T GIPC3 3'UTR 0.44 TCGA-DD-AADP-01 19 4816573 4816573 C T TICAM1 Missense_Mutation p.R606Q 0.19 tolerated(1) benign(0) TCGA-DD-AADP-01 19 49132057 49132057 C T SPHK2 Missense_Mutation p.S331F 0.29 deleterious(0) possibly_damaging(0.707) TCGA-DD-AADP-01 19 49638145 49638145 G A PPFIA3 Missense_Mutation p.R498Q 0.40 deleterious(0.02) probably_damaging(0.988) TCGA-DD-AADP-01 19 51017056 51017056 C T ASPDH Missense_Mutation p.V9M 0.06 deleterious(0) possibly_damaging(0.832) TCGA-DD-AADP-01 19 53013919 53013919 T C ZNF578 Silent p.S95S 0.42 TCGA-DD-AADP-01 19 53473839 53473839 G T ZNF702P RNA 0.33 TCGA-DD-AADP-01 1 155630103 155630103 C T YY1AP1 Missense_Mutation p.R671K 0.28 tolerated_low_confidence(0.34) benign(0.108) TCGA-DD-AADP-01 1 1562694 1562694 G T MIB2 Missense_Mutation p.G580C 0.55 deleterious(0) probably_damaging(1) TCGA-DD-AADP-01 1 170633528 170633528 G A PRRX1 Missense_Mutation p.V57M 0.28 tolerated(0.19) benign(0.09) TCGA-DD-AADP-01 1 177250089 177250089 T C BRINP2 Missense_Mutation p.F593L 0.27 tolerated(0.11) probably_damaging(0.97) TCGA-DD-AADP-01 1 178834353 178834353 T G ANGPTL1 Missense_Mutation p.N187H 0.53 tolerated(0.06) benign(0.127) TCGA-DD-AADP-01 1 186880516 186880516 C T PLA2G4A Missense_Mutation p.R185C 0.41 deleterious(0.02) possibly_damaging(0.587) TCGA-DD-AADP-01 1 220273891 220273891 G T IARS2 Silent p.V150V 0.53 TCGA-DD-AADP-01 1 240370098 240370098 G A FMN2 Splice_Site p.X663_splice 0.56 TCGA-DD-AADP-01 1 241797784 241797784 T C CHML Missense_Mutation p.I429V 0.25 tolerated(0.06) possibly_damaging(0.61) TCGA-DD-AADP-01 1 27097800 27097809 TCCAGCCTCC - ARID1A Frame_Shift_Del p.I1130Tfs*28 0.65 TCGA-DD-AADP-01 1 27216517 27216517 G A GPN2 Missense_Mutation p.T24M 0.09 deleterious(0) probably_damaging(0.999) TCGA-DD-AADP-01 1 33146125 33146125 A - RBBP4 3'UTR 0.09 TCGA-DD-AADP-01 1 33146125 33146125 A T RBBP4 3'UTR 0.44 TCGA-DD-AADP-01 1 40661311 40661311 A G RLF Missense_Mutation p.H161R 0.06 deleterious(0) probably_damaging(0.999) TCGA-DD-AADP-01 1 52882462 52882462 T G PRPF38A 3'UTR 0.69 TCGA-DD-AADP-01 1 91382375 91382375 T A ZNF644 Missense_Mutation p.M1322L 0.43 deleterious(0.04) possibly_damaging(0.803) TCGA-DD-AADP-01 1 94685889 94685889 T C ARHGAP29 Missense_Mutation p.I89V 0.35 tolerated(1) benign(0.002) TCGA-DD-AADP-01 20 1184179 1184179 C T C20orf202 Missense_Mutation p.P7S 0.40 tolerated_low_confidence(0.12) benign(0.174) TCGA-DD-AADP-01 20 21312938 21312938 G A XRN2 Missense_Mutation p.G240S 0.40 deleterious(0) probably_damaging(1) TCGA-DD-AADP-01 20 55093525 55093525 G T RTFDC1 3'UTR 0.43 TCGA-DD-AADP-01 21 34967612 34967612 T G CRYZL1 Intron 0.67 TCGA-DD-AADP-01 22 25145785 25145785 T G PIWIL3 Missense_Mutation p.Q364P 0.37 deleterious(0) probably_damaging(0.927) TCGA-DD-AADP-01 22 38421598 38421598 G A POLR2F Silent p.G102G 0.34 TCGA-DD-AADP-01 22 39497462 39497462 G A APOBEC3H Missense_Mutation p.R124Q 0.46 tolerated(0.63) benign(0.03) TCGA-DD-AADP-01 2 148693009 148693009 A C ORC4 3'UTR 0.45 TCGA-DD-AADP-01 2 15319165 15319165 G A NBAS Nonsense_Mutation p.R2263* 0.38 TCGA-DD-AADP-01 2 155711696 155711696 A T KCNJ3 Missense_Mutation p.L459F 0.40 tolerated_low_confidence(0.71) benign(0.021) TCGA-DD-AADP-01 2 16082485 16082485 G T MYCN Missense_Mutation p.G100V 0.37 deleterious(0.01) possibly_damaging(0.509) TCGA-DD-AADP-01 2 210574913 210574913 C A MAP2 Missense_Mutation p.L1670M 0.28 deleterious(0) probably_damaging(0.998) TCGA-DD-AADP-01 2 220034747 220034747 G A SLC23A3 5'UTR 0.32 TCGA-DD-AADP-01 2 230456443 230456443 T G DNER Missense_Mutation p.E146D 0.36 tolerated_low_confidence(0.11) possibly_damaging(0.855) TCGA-DD-AADP-01 2 231911763 231911763 C T C2orf72 3'UTR 0.32 TCGA-DD-AADP-01 2 33588558 33588558 T G LTBP1 Missense_Mutation p.Y1458D 0.50 deleterious(0) probably_damaging(0.999) TCGA-DD-AADP-01 2 75107408 75107408 C G HK2 Missense_Mutation p.H428D 0.44 tolerated(0.21) benign(0.264) TCGA-DD-AADP-01 2 8953428 8953428 C T KIDINS220 Missense_Mutation p.G115D 0.38 deleterious(0) probably_damaging(1) TCGA-DD-AADP-01 3 150290287 150290287 A G EIF2A Missense_Mutation p.R452G 0.39 deleterious(0) probably_damaging(0.994) TCGA-DD-AADP-01 3 29804446 29804446 T C RBMS3 Silent p.N201N 0.33 TCGA-DD-AADP-01 3 31658480 31658480 A C STT3B Missense_Mutation p.K346Q 0.35 tolerated(0.29) benign(0.091) TCGA-DD-AADP-01 3 38891953 38891953 G T SCN11A Intron 0.06 TCGA-DD-AADP-01 3 48501904 48501904 A G ATRIP Missense_Mutation p.H484R 0.35 deleterious(0) probably_damaging(0.991) TCGA-DD-AADP-01 3 49070130 49070130 G A QRICH1 Missense_Mutation p.P658S 0.39 tolerated(0.08) possibly_damaging(0.591) TCGA-DD-AADP-01 3 52595942 52595942 A C PBRM1 Missense_Mutation p.S1325A 0.39 tolerated(0.62) benign(0.198) TCGA-DD-AADP-01 4 13601769 13601769 C A BOD1L1 Missense_Mutation p.G2252V 0.37 probably_damaging(1) TCGA-DD-AADP-01 4 140616397 140616397 A G MGST2 Missense_Mutation p.M69V 0.63 tolerated(0.63) benign(0.029) TCGA-DD-AADP-01 4 42065032 42065032 C A SLC30A9 Missense_Mutation p.S309Y 0.18 tolerated(0.13) benign(0.01) TCGA-DD-AADP-01 4 46060543 46060543 A G GABRG1 Missense_Mutation p.V241A 0.41 tolerated(0.05) benign(0.008) TCGA-DD-AADP-01 4 651192 651192 A T PDE6B Missense_Mutation p.K437M 0.34 deleterious(0.01) benign(0.141) TCGA-DD-AADP-01 4 68528881 68528881 T G UBA6 Missense_Mutation p.K338T 0.58 tolerated(0.1) benign(0.001) TCGA-DD-AADP-01 5 141038047 141038047 C T ARAP3 Splice_Site p.X1138_splice 0.27 TCGA-DD-AADP-01 5 150887158 150887158 G A FAT2 Missense_Mutation p.A4025V 0.27 benign(0.023) TCGA-DD-AADP-01 5 179707453 179707453 G C MAPK9 Missense_Mutation p.Q37E 0.28 tolerated(0.1) probably_damaging(0.944) TCGA-DD-AADP-01 5 39126206 39126206 T C FYB Missense_Mutation p.T657A 0.24 tolerated(0.4) benign(0.004) TCGA-DD-AADP-01 5 42806931 42806931 G C SEPP1 Intron 0.30 TCGA-DD-AADP-01 5 85592170 85592170 T C NBPF22P RNA 0.32 TCGA-DD-AADP-01 6 121452855 121452855 A C TBC1D32 Missense_Mutation p.D939E 0.67 tolerated(0.79) benign(0.011) TCGA-DD-AADP-01 6 123658791 123658791 T C TRDN Missense_Mutation p.K465E 0.05 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-DD-AADP-01 6 129704303 129704303 C T LAMA2 Nonsense_Mutation p.Q1666* 0.56 TCGA-DD-AADP-01 6 147830394 147830394 T C SAMD5 Silent p.S110S 0.33 TCGA-DD-AADP-01 6 2685717 2685717 C T MYLK4 Silent p.K145K 0.25 TCGA-DD-AADP-01 6 31635683 31635683 T C CSNK2B-LY6G5B-1181 Silent p.T37T 0.37 TCGA-DD-AADP-01 6 31760763 31760763 G A VARS Silent p.Y174Y 0.35 TCGA-DD-AADP-01 6 33145203 33145204 - GCC COL11A2 In_Frame_Ins p.G566dup 0.30 TCGA-DD-AADP-01 6 35944984 35944984 G A SLC26A8 Silent p.N390N 0.36 TCGA-DD-AADP-01 6 38897346 38897346 C A DNAH8 Silent p.G3509G 0.43 TCGA-DD-AADP-01 6 43400067 43400067 C G ABCC10 Missense_Mutation p.L117V 0.12 tolerated(0.27) benign(0.008) TCGA-DD-AADP-01 6 51524481 51524481 C A PKHD1 Missense_Mutation p.L3481F 0.33 tolerated(0.3) benign(0.221) TCGA-DD-AADP-01 7 121653745 121653745 A C PTPRZ1 Missense_Mutation p.S1549R 0.34 deleterious(0) probably_damaging(0.981) TCGA-DD-AADP-01 7 6803595 6803595 G A RSPH10B2 Missense_Mutation p.V146M 0.20 tolerated(0.32) benign(0.243) TCGA-DD-AADP-01 7 73646355 73646355 C A RFC2 3'UTR 0.45 TCGA-DD-AADP-01 7 87459284 87459284 C G RUNDC3B Missense_Mutation p.S454C 0.33 deleterious(0) probably_damaging(0.99) TCGA-DD-AADP-01 8 103664417 103664417 G C KLF10 Missense_Mutation p.P82R 0.60 tolerated(0.15) benign(0.303) TCGA-DD-AADP-01 8 145540696 145540696 A C DGAT1 Missense_Mutation p.F413V 0.51 deleterious(0) probably_damaging(0.934) TCGA-DD-AADP-01 8 146054920 146054920 C T ZNF7 Silent p.L21L 0.27 TCGA-DD-AADP-01 8 22548606 22548606 C A EGR3 Missense_Mutation p.A182S 0.60 tolerated(0.59) benign(0.011) TCGA-DD-AADP-01 8 27824054 27824054 A G SCARA5 Missense_Mutation p.C40R 0.19 tolerated(0.54) benign(0.079) TCGA-DD-AADP-01 8 41906233 41906233 T A KAT6A Missense_Mutation p.H88L 0.49 benign(0.005) TCGA-DD-AADP-01 8 67488316 67488316 C A MYBL1 Missense_Mutation p.G466C 0.20 tolerated(0.06) possibly_damaging(0.779) TCGA-DD-AADP-01 9 130616811 130616811 A G ENG 5'UTR 0.46 TCGA-DD-AADP-01 9 138376480 138376480 T A PPP1R26 Missense_Mutation p.S42T 0.33 deleterious(0.02) benign(0.005) TCGA-DD-AADP-01 9 19372063 19372063 A G DENND4C Silent p.A1874A 0.53 TCGA-DD-AADP-01 9 32631818 32631818 T G TAF1L Missense_Mutation p.K1254Q 0.37 deleterious(0.01) probably_damaging(0.969) TCGA-DD-AADP-01 9 32631838 32631838 T A TAF1L Missense_Mutation p.Q1247L 0.35 deleterious(0) probably_damaging(0.997) TCGA-DD-AADP-01 9 88889128 88889128 T C ISCA1 Silent p.Q37Q 0.49 TCGA-DD-AADP-01 9 91150364 91150364 G C NXNL2 Silent p.L5L 0.05 TCGA-DD-AADP-01 X 70775091 70775091 G T OGT Silent p.V260V 0.75 TCGA-DD-AADQ-01 10 103989062 103989067 GAGGCT - ELOVL3 3'UTR 0.32 TCGA-DD-AADQ-01 10 108924108 108924108 C A SORCS1 Missense_Mutation p.Q59H 0.10 deleterious_low_confidence(0.05) benign(0.031) TCGA-DD-AADQ-01 10 18828423 18828423 C T CACNB2 Missense_Mutation p.H585Y 0.38 tolerated(0.3) possibly_damaging(0.752) TCGA-DD-AADQ-01 10 44052197 44052197 G A ZNF239 Missense_Mutation p.S444F 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-DD-AADQ-01 10 45406975 45406975 G A TMEM72 Silent p.V5V 0.38 TCGA-DD-AADQ-01 10 49935534 49935534 C A WDFY4 Silent p.L267L 0.40 TCGA-DD-AADQ-01 10 7659077 7659077 T A ITIH5 Missense_Mutation p.Q274L 0.05 deleterious(0) probably_damaging(0.944) TCGA-DD-AADQ-01 11 103907408 103907408 C T DDI1 5'UTR 0.42 TCGA-DD-AADQ-01 11 107488869 107488869 T C ELMOD1 5'UTR 0.43 TCGA-DD-AADQ-01 11 30034089 30034089 G C KCNA4 Missense_Mutation p.A46G 0.39 tolerated_low_confidence(0.44) unknown(0) TCGA-DD-AADQ-01 11 47201829 47201829 C A PACSIN3 Nonsense_Mutation p.E171* 0.45 TCGA-DD-AADQ-01 11 5013312 5013312 C T MMP26 Silent p.F238F 0.38 TCGA-DD-AADQ-01 11 55541283 55541283 C A OR5D13 Missense_Mutation p.R124S 0.42 deleterious(0) possibly_damaging(0.575) TCGA-DD-AADQ-01 11 55905105 55905105 G T OR8J3 Silent p.V30V 0.46 TCGA-DD-AADQ-01 11 60609943 60609943 T C CCDC86 Missense_Mutation p.C116R 0.40 tolerated_low_confidence(0.38) benign(0.001) TCGA-DD-AADQ-01 11 62863471 62863471 G C SLC22A24 Missense_Mutation p.C354W 0.41 tolerated(0.19) benign(0.413) TCGA-DD-AADQ-01 11 7111063 7111063 T C RBMXL2 Missense_Mutation p.Y238H 0.27 deleterious(0.02) benign(0.403) TCGA-DD-AADQ-01 11 78525437 78525437 G T TENM4 Nonsense_Mutation p.S562* 0.41 TCGA-DD-AADQ-01 11 86663371 86663371 G T FZD4 Missense_Mutation p.L143M 0.36 tolerated(0.52) probably_damaging(0.98) TCGA-DD-AADQ-01 12 109746129 109746129 C G FOXN4 Intron 0.48 TCGA-DD-AADQ-01 12 31253946 31253960 CCTGGCTCTTACCAG AGA DDX11 Splice_Site p.X650_splice 0.27 TCGA-DD-AADQ-01 12 31253960 31253961 - A DDX11 Frame_Shift_Ins p.G650Efs*45 0.21 TCGA-DD-AADQ-01 12 62798173 62798173 A G USP15 3'UTR 0.05 TCGA-DD-AADQ-01 12 6574098 6574099 - GA VAMP1 Frame_Shift_Ins p.M100Sfs*12 0.19 TCGA-DD-AADQ-01 13 111358273 111358273 G A CARS2 Silent p.N56N 0.58 TCGA-DD-AADQ-01 13 20763464 20763464 G A GJB2 Missense_Mutation p.T86M 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-DD-AADQ-01 13 25823489 25823497 GAAGAGCAT ATCATTTA MTMR6 Frame_Shift_Del p.D580Vfs*6 0.34 TCGA-DD-AADQ-01 13 27333433 27333433 C A GPR12 Missense_Mutation p.G178C 0.46 deleterious(0) probably_damaging(0.998) TCGA-DD-AADQ-01 13 67799953 67799953 T C PCDH9 Missense_Mutation p.R874G 0.41 tolerated(0.18) benign(0.407) TCGA-DD-AADQ-01 13 70535504 70535504 C G KLHL1 Missense_Mutation p.E251D 0.46 tolerated(0.18) benign(0.075) TCGA-DD-AADQ-01 14 102500705 102500705 A T DYNC1H1 Missense_Mutation p.D3557V 0.43 probably_damaging(0.998) TCGA-DD-AADQ-01 14 24679870 24679870 T A CHMP4A Missense_Mutation p.D198V 0.39 tolerated(0.18) benign(0.049) TCGA-DD-AADQ-01 14 29236691 29236691 C A FOXG1 Missense_Mutation p.P69Q 0.04 tolerated_low_confidence(0.1) unknown(0) TCGA-DD-AADQ-01 14 74042303 74042303 T G ACOT2 3'UTR 0.47 TCGA-DD-AADQ-01 15 25213230 25213230 G T SNRPN Splice_Site 0.29 TCGA-DD-AADQ-01 15 33260970 33260970 G C FMN1 Missense_Mutation p.P755A 0.30 deleterious(0) probably_damaging(0.999) TCGA-DD-AADQ-01 15 42042688 42042688 G C MGA Missense_Mutation p.D2295H 0.45 deleterious(0) possibly_damaging(0.806) TCGA-DD-AADQ-01 15 49620146 49620146 T C GALK2 Intron 0.33 TCGA-DD-AADQ-01 16 1525016 1525016 C - CLCN7 5'UTR 0.30 TCGA-DD-AADQ-01 16 27366527 27366530 AAAT - IL4R Intron 0.56 TCGA-DD-AADQ-01 16 31332817 31332817 T C ITGAM Missense_Mutation p.M625T 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AADQ-01 16 31336335 31336335 C A ITGAM Silent p.I783I 0.28 TCGA-DD-AADQ-01 16 31478252 31478252 G T ARMC5 3'UTR 0.31 TCGA-DD-AADQ-01 16 31485920 31485920 A C TGFB1I1 Missense_Mutation p.S186R 0.40 tolerated(0.2) benign(0.034) TCGA-DD-AADQ-01 16 422089 422089 C A TMEM8A Silent p.P738P 0.36 TCGA-DD-AADQ-01 16 68265386 68265401 TGCTGGTTGAGCACCA - ESRP2 Frame_Shift_Del p.M499Rfs*12 0.27 TCGA-DD-AADQ-01 17 10101808 10101808 C T GAS7 5'UTR 0.50 TCGA-DD-AADQ-01 17 1378257 1378257 C A MYO1C Silent p.A548A 0.39 TCGA-DD-AADQ-01 17 27028455 27028455 A G SUPT6H Splice_Site p.X1665_splice 0.49 TCGA-DD-AADQ-01 17 37824630 37824630 C A PNMT 5'UTR 0.38 TCGA-DD-AADQ-01 17 39766282 39766282 C T KRT16 Splice_Site p.X443_splice 0.38 TCGA-DD-AADQ-01 17 41143111 41143111 C T RUNDC1 Missense_Mutation p.T407I 0.46 tolerated(0.16) benign(0.16) TCGA-DD-AADQ-01 17 41166341 41166342 - C IFI35 3'UTR 0.35 TCGA-DD-AADQ-01 17 42751585 42751585 G A C17orf104 3'UTR 0.38 TCGA-DD-AADQ-01 17 9604706 9604706 A T USP43 Missense_Mutation p.Q567L 0.39 deleterious(0) benign(0.232) TCGA-DD-AADQ-01 18 19997418 19997418 T A CTAGE1 Missense_Mutation p.E119D 0.36 deleterious(0.01) probably_damaging(0.977) TCGA-DD-AADQ-01 18 47101852 47101852 A T LIPG Missense_Mutation p.S229C 0.36 deleterious(0) probably_damaging(0.998) TCGA-DD-AADQ-01 18 52604137 52604137 C T CCDC68 Missense_Mutation p.R133K 0.44 tolerated(0.6) benign(0.011) TCGA-DD-AADQ-01 18 9547633 9547633 T A PPP4R1 3'UTR 0.36 TCGA-DD-AADQ-01 19 11143970 11143970 T C SMARCA4 Missense_Mutation p.L1184P 0.43 probably_damaging(1) TCGA-DD-AADQ-01 19 11456341 11456341 T C TMEM205 5'UTR 0.43 TCGA-DD-AADQ-01 19 11728647 11728656 AGAGAAACCC - ZNF627 Frame_Shift_Del p.E444Mfs*88 0.52 TCGA-DD-AADQ-01 19 12500942 12500942 C A ZNF799 3'UTR 0.36 TCGA-DD-AADQ-01 19 17321609 17321609 G A MYO9B Missense_Mutation p.R1961Q 0.45 tolerated(0.48) benign(0.025) TCGA-DD-AADQ-01 19 22940876 22940876 T A ZNF99 Missense_Mutation p.Q612L 0.46 tolerated(0.06) benign(0.074) TCGA-DD-AADQ-01 19 33623009 33623009 C T WDR88 5'UTR 0.30 TCGA-DD-AADQ-01 19 37880756 37880756 G T ZNF527 Missense_Mutation p.R602I 0.43 deleterious(0) benign(0.031) TCGA-DD-AADQ-01 19 38956904 38956904 G A RYR1 Missense_Mutation p.R1015H 0.37 probably_damaging(0.971) TCGA-DD-AADQ-01 19 40872350 40872350 T G PLD3 5'UTR 0.37 TCGA-DD-AADQ-01 19 45260629 45260629 C T BCL3 Missense_Mutation p.T257I 0.39 tolerated(0.53) benign(0.047) TCGA-DD-AADQ-01 19 52216886 52216886 G A HAS1 Silent p.L511L 0.40 TCGA-DD-AADQ-01 19 52888566 52888566 G A ZNF880 Silent p.%3D 0.05 TCGA-DD-AADQ-01 19 53014279 53014279 A T ZNF578 Silent p.S215S 0.38 TCGA-DD-AADQ-01 19 53644667 53644667 G A ZNF347 Missense_Mutation p.L473F 0.41 deleterious(0.03) probably_damaging(0.926) TCGA-DD-AADQ-01 19 54598416 54598416 C G OSCAR 3'UTR 0.37 TCGA-DD-AADQ-01 19 55329855 55329855 T C KIR3DL1 Silent p.R52R 0.80 TCGA-DD-AADQ-01 19 5594100 5594100 A C SAFB2 Missense_Mutation p.L670R 0.36 deleterious(0.02) possibly_damaging(0.902) TCGA-DD-AADQ-01 1 120337057 120337057 A T REG4 3'UTR 0.62 TCGA-DD-AADQ-01 1 12321087 12321087 A G VPS13D Missense_Mutation p.Y432C 0.04 benign(0.299) TCGA-DD-AADQ-01 1 154226506 154226506 A T UBAP2L Missense_Mutation p.T599S 0.48 tolerated(0.61) unknown(0) TCGA-DD-AADQ-01 1 156816468 156816468 G C INSRR Silent p.P551P 0.38 TCGA-DD-AADQ-01 1 171076962 171076962 A - FMO3 Frame_Shift_Del p.E158Sfs*6 0.24 TCGA-DD-AADQ-01 1 17318784 17318784 G T ATP13A2 Silent p.V653V 0.71 TCGA-DD-AADQ-01 1 173455515 173455515 G A PRDX6 Missense_Mutation p.R174K 0.40 tolerated(1) benign(0) TCGA-DD-AADQ-01 1 205388368 205388368 A G LEMD1 Silent p.D65D 0.34 TCGA-DD-AADQ-01 1 222801611 222801611 A G MIA3 Missense_Mutation p.Y350C 0.37 deleterious(0.05) probably_damaging(0.91) TCGA-DD-AADQ-01 1 23409732 23409732 C T KDM1A Missense_Mutation p.H836Y 0.78 deleterious(0) probably_damaging(0.999) TCGA-DD-AADQ-01 1 35453298 35453298 T G ZMYM6 Missense_Mutation p.S1129R 0.06 deleterious(0.01) benign(0.35) TCGA-DD-AADQ-01 1 37282713 37282713 G A GRIK3 Missense_Mutation p.T680I 0.10 deleterious(0) probably_damaging(0.968) TCGA-DD-AADQ-01 1 45407298 45407298 C T EIF2B3 Missense_Mutation p.V112I 0.06 tolerated(0.13) benign(0.065) TCGA-DD-AADQ-01 1 59043149 59043149 A G TACSTD2 5'UTR 0.09 TCGA-DD-AADQ-01 1 71512486 71512486 G A PTGER3 Missense_Mutation p.R259C 0.67 deleterious(0) probably_damaging(1) TCGA-DD-AADQ-01 1 84417572 84417572 T A TTLL7 Missense_Mutation p.K38M 0.05 deleterious(0) possibly_damaging(0.838) TCGA-DD-AADQ-01 20 270284 270284 T C C20orf96 Missense_Mutation p.T35A 0.44 tolerated(0.43) benign(0.039) TCGA-DD-AADQ-01 20 52198237 52198237 A T ZNF217 Missense_Mutation p.C377S 0.44 deleterious(0) probably_damaging(1) TCGA-DD-AADQ-01 20 58496502 58496502 C A SYCP2 Nonsense_Mutation p.E11* 0.43 TCGA-DD-AADQ-01 20 58533702 58533702 G A CDH26 5'UTR 0.36 TCGA-DD-AADQ-01 20 58569360 58569360 T C CDH26 Silent p.N494N 0.48 TCGA-DD-AADQ-01 20 62273597 62273597 T C STMN3 Missense_Mutation p.E116G 0.37 deleterious(0) benign(0.113) TCGA-DD-AADQ-01 21 16337020 16337020 T C NRIP1 3'UTR 0.78 TCGA-DD-AADQ-01 21 45655360 45655360 G A ICOSLG Silent p.Y164Y 0.68 TCGA-DD-AADQ-01 22 16287870 16287870 C T POTEH Missense_Mutation p.G6S 0.29 tolerated_low_confidence(1) benign(0.004) TCGA-DD-AADQ-01 22 41215335 41215335 A C SLC25A17 5'UTR 0.83 TCGA-DD-AADQ-01 2 100050856 100050856 G A REV1 Missense_Mutation p.P459L 0.40 deleterious(0) probably_damaging(0.994) TCGA-DD-AADQ-01 2 101620868 101620868 A G RPL31 Intron 0.25 TCGA-DD-AADQ-01 2 128366406 128366406 C T MYO7B Missense_Mutation p.P923S 0.47 tolerated(0.06) probably_damaging(0.999) TCGA-DD-AADQ-01 2 139429158 139429158 C T NXPH2 Silent p.L43L 0.39 TCGA-DD-AADQ-01 2 141739748 141739748 T A LRP1B Silent p.T956T 0.31 TCGA-DD-AADQ-01 2 145146378 145146378 A T ZEB2 3'UTR 0.36 TCGA-DD-AADQ-01 2 149267693 149267693 A G MBD5 Missense_Mutation p.M1468V 0.39 tolerated(0.07) unknown(0) TCGA-DD-AADQ-01 2 1642646 1642646 T C PXDN Missense_Mutation p.Q1393R 0.39 deleterious(0.03) benign(0.046) TCGA-DD-AADQ-01 2 166868648 166868648 A T SCN1A Missense_Mutation p.W1284R 0.36 deleterious(0) probably_damaging(1) TCGA-DD-AADQ-01 2 168115577 168115577 G A XIRP2 3'UTR 0.38 TCGA-DD-AADQ-01 2 170806382 170806382 T G UBR3 Missense_Mutation p.L1118V 0.48 tolerated(0.28) benign(0.079) TCGA-DD-AADQ-01 2 192546742 192546742 G T NABP1 Nonsense_Mutation p.E101* 0.40 TCGA-DD-AADQ-01 2 198318284 198318284 C A COQ10B 5'UTR 0.43 TCGA-DD-AADQ-01 2 201521589 201521589 C T AOX1 Missense_Mutation p.L1034F 0.31 tolerated(0.29) possibly_damaging(0.878) TCGA-DD-AADQ-01 2 210559368 210559368 A G MAP2 Missense_Mutation p.D825G 0.37 deleterious(0) probably_damaging(0.979) TCGA-DD-AADQ-01 2 216261901 216261901 G T FN1 Missense_Mutation p.T1188N 0.34 tolerated(0.07) benign(0.051) TCGA-DD-AADQ-01 2 233709124 233709124 A G GIGYF2 Missense_Mutation p.I1070V 0.40 unknown(0) TCGA-DD-AADQ-01 2 234638551 234638551 A G UGT1A3 Missense_Mutation p.D260G 0.32 deleterious(0) probably_damaging(0.997) TCGA-DD-AADQ-01 2 27360805 27360805 G T C2orf53 Silent p.S131S 0.37 TCGA-DD-AADQ-01 2 54587449 54587449 C A C2orf73 Missense_Mutation p.S205Y 0.45 deleterious(0.01) probably_damaging(0.957) TCGA-DD-AADQ-01 2 74601519 74601520 - AC DCTN1 Intron 0.24 TCGA-DD-AADQ-01 3 121304965 121304965 C A ARGFX Missense_Mutation p.P156T 0.38 deleterious(0.02) benign(0.255) TCGA-DD-AADQ-01 3 121573668 121573668 A C EAF2 Silent p.T112T 0.39 TCGA-DD-AADQ-01 3 124635177 124635177 A G MUC13 Silent p.F316F 0.45 TCGA-DD-AADQ-01 3 130380832 130380832 T C COL6A6 Missense_Mutation p.I2061T 0.36 tolerated(0.18) benign(0.011) TCGA-DD-AADQ-01 3 138183192 138183192 G A ESYT3 Silent p.V307V 0.37 TCGA-DD-AADQ-01 3 142775385 142775385 A G U2SURP 3'UTR 0.37 TCGA-DD-AADQ-01 3 180377348 180377348 T C CCDC39 Silent p.A210A 0.40 TCGA-DD-AADQ-01 3 197409349 197409349 T A KIAA0226 Silent p.P706P 0.39 TCGA-DD-AADQ-01 3 197409351 197409351 G A KIAA0226 Missense_Mutation p.P706S 0.39 tolerated(0.05) benign(0.052) TCGA-DD-AADQ-01 3 57646534 57646534 C A DENND6A Missense_Mutation p.V218L 0.41 tolerated(0.41) benign(0.049) TCGA-DD-AADQ-01 4 113362606 113362606 A T ALPK1 3'UTR 0.70 TCGA-DD-AADQ-01 4 144801614 144801614 G A GYPE Missense_Mutation p.T29I 0.44 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-DD-AADQ-01 4 152043077 152043077 T A SH3D19 3'UTR 0.33 TCGA-DD-AADQ-01 4 166184404 166184404 G T KLHL2 Missense_Mutation p.C150F 0.48 deleterious(0) possibly_damaging(0.904) TCGA-DD-AADQ-01 4 170043263 170043263 G A SH3RF1 Missense_Mutation p.T445I 0.38 tolerated(0.18) benign(0.043) TCGA-DD-AADQ-01 4 17516820 17516820 G T CLRN2 5'UTR 0.42 TCGA-DD-AADQ-01 4 40809188 40809188 T C NSUN7 Missense_Mutation p.I504T 0.41 deleterious(0) benign(0.097) TCGA-DD-AADQ-01 4 6865250 6865250 A G KIAA0232 Silent p.P1047P 0.33 TCGA-DD-AADQ-01 4 74281992 74281992 T - ALB Frame_Shift_Del p.V405Wfs*7 0.30 TCGA-DD-AADQ-01 4 75484681 75484681 G A AREGB Missense_Mutation p.G157R 0.73 deleterious(0) probably_damaging(1) TCGA-DD-AADQ-01 4 82125912 82125912 G A PRKG2 Missense_Mutation p.S97F 0.39 tolerated(0.15) possibly_damaging(0.656) TCGA-DD-AADQ-01 5 121780326 121780326 C A SNCAIP Silent p.A497A 0.21 TCGA-DD-AADQ-01 5 127614345 127614345 A C FBN2 Missense_Mutation p.Y2443D 0.17 deleterious(0) probably_damaging(0.924) TCGA-DD-AADQ-01 5 127680092 127680092 C T FBN2 Missense_Mutation p.E1110K 0.03 tolerated(0.08) probably_damaging(0.971) TCGA-DD-AADQ-01 5 134781945 134781945 T C TIFAB 3'UTR 0.25 TCGA-DD-AADQ-01 5 140480110 140480110 T A PCDHB3 5'Flank 0.19 TCGA-DD-AADQ-01 5 140772927 140772927 C G PCDHGA8 Missense_Mutation p.Q183E 0.25 deleterious_low_confidence(0) possibly_damaging(0.535) TCGA-DD-AADQ-01 5 140870856 140870856 C T PCDHGC5 Silent p.H683H 0.23 TCGA-DD-AADQ-01 5 149225754 149225754 A G PPARGC1B Intron 0.26 TCGA-DD-AADQ-01 5 156590354 156590354 G A FAM71B Nonsense_Mutation p.Q308* 0.76 TCGA-DD-AADQ-01 5 159463724 159463724 A T TTC1 Missense_Mutation p.S140C 0.20 deleterious(0) possibly_damaging(0.841) TCGA-DD-AADQ-01 5 177059214 177059214 G A RP11-1277A3.2 Intron 0.25 TCGA-DD-AADQ-01 5 55265599 55265599 A G IL6ST Missense_Mutation p.L50P 0.63 deleterious(0) probably_damaging(0.983) TCGA-DD-AADQ-01 5 60368969 60368969 A G NDUFAF2 Missense_Mutation p.K49E 0.24 deleterious(0.04) benign(0.048) TCGA-DD-AADQ-01 5 71403461 71403461 A C MAP1B Missense_Mutation p.S35R 0.21 unknown(0) TCGA-DD-AADQ-01 6 117130749 117130749 C T GPRC6A Missense_Mutation p.A76T 0.67 deleterious(0) probably_damaging(0.983) TCGA-DD-AADQ-01 6 119150342 119150342 T C MCM9 Missense_Mutation p.Q466R 0.64 tolerated(0.22) benign(0.005) TCGA-DD-AADQ-01 6 143818355 143818355 T C FUCA2 Intron 0.75 TCGA-DD-AADQ-01 6 144863929 144863929 A G UTRN Splice_Site p.X2174_splice 0.59 TCGA-DD-AADQ-01 6 170104882 170104882 T C C6orf120 3'UTR 0.77 TCGA-DD-AADQ-01 6 24528371 24528371 C T ALDH5A1 Silent p.F453F 0.05 TCGA-DD-AADQ-01 6 26545913 26545913 A G HMGN4 3'UTR 0.67 TCGA-DD-AADQ-01 6 33423514 33423514 G A ZBTB9 Missense_Mutation p.E213K 0.60 tolerated(0.11) benign(0.197) TCGA-DD-AADQ-01 6 36652053 36652053 C T CDKN1A Silent p.L59L 0.22 TCGA-DD-AADQ-01 6 4060749 4060749 C T PRPF4B Nonsense_Mutation p.Q975* 0.70 TCGA-DD-AADQ-01 7 122634906 122634906 C G TAS2R16 Missense_Mutation p.W261C 0.33 tolerated(0.09) benign(0.043) TCGA-DD-AADQ-01 7 149524046 149524046 A G SSPO Intron 0.42 TCGA-DD-AADQ-01 7 19157077 19157077 G T TWIST1 5'UTR 0.45 TCGA-DD-AADQ-01 7 47440020 47440020 C T TNS3 Missense_Mutation p.V297I 0.36 tolerated(0.11) benign(0.311) TCGA-DD-AADQ-01 7 66461903 66461903 A G TYW1 5'UTR 0.47 TCGA-DD-AADQ-01 7 81593423 81593423 G A CACNA2D1 Missense_Mutation p.P910L 0.42 deleterious(0) probably_damaging(0.999) TCGA-DD-AADQ-01 7 86526844 86526844 C T KIAA1324L Missense_Mutation p.G888E 0.40 tolerated(0.08) possibly_damaging(0.596) TCGA-DD-AADQ-01 8 125551423 125551423 C T NDUFB9 5'UTR 0.23 TCGA-DD-AADQ-01 8 39678669 39678669 T A ADAM2 Missense_Mutation p.N122I 0.20 deleterious(0) probably_damaging(0.998) TCGA-DD-AADQ-01 8 63951328 63951328 G A GGH 5'UTR 0.72 TCGA-DD-AADQ-01 8 68864433 68864433 C T PREX2 5'UTR 0.30 TCGA-DD-AADQ-01 8 82644787 82644787 A G CHMP4C 5'UTR 0.24 TCGA-DD-AADQ-01 8 87755757 87755757 T G CNGB3 Silent p.P33P 0.66 TCGA-DD-AADQ-01 9 131256880 131256880 A G ODF2 Missense_Mutation p.D615G 0.37 deleterious(0) benign(0.295) TCGA-DD-AADQ-01 9 132638408 132638408 G T USP20 Splice_Site p.X767_splice 0.37 TCGA-DD-AADQ-01 9 135553599 135553599 A G GTF3C4 Missense_Mutation p.N198S 0.36 tolerated(0.53) benign(0.026) TCGA-DD-AADQ-01 9 33467217 33467217 C G NOL6 Missense_Mutation p.R590P 0.49 deleterious(0) probably_damaging(0.999) TCGA-DD-AADQ-01 9 434898 434898 G A DOCK8 Missense_Mutation p.A1668T 0.45 tolerated(0.06) possibly_damaging(0.499) TCGA-DD-AADQ-01 9 79898289 79898289 A T VPS13A Missense_Mutation p.N1046I 0.39 tolerated(0.44) benign(0.042) TCGA-DD-AADQ-01 X 114863611 114863611 C T PLS3 Silent p.S113S 0.84 TCGA-DD-AADQ-01 X 135443733 135443733 G T GPR112 Missense_Mutation p.A2422S 0.80 deleterious(0) probably_damaging(0.949) TCGA-DD-AADQ-01 X 152915517 152915517 C T DUSP9 Silent p.Y304Y 0.76 TCGA-DD-AADQ-01 X 54185860 54185862 CTT - FAM120C In_Frame_Del p.E296del 0.79 TCGA-DD-AADQ-01 X 88008450 88008450 C T CPXCR1 Missense_Mutation p.A12V 0.86 tolerated(0.11) benign(0.031) TCGA-DD-AADR-01 10 106937819 106937819 C A SORCS3 Intron 0.31 TCGA-DD-AADR-01 10 25312662 25312662 A T THNSL1 Silent p.T170T 0.36 TCGA-DD-AADR-01 10 62553751 62553751 T G CDK1 3'UTR 0.27 TCGA-DD-AADR-01 10 70166967 70166967 C A RUFY2 5'Flank 0.46 TCGA-DD-AADR-01 10 76993825 76993825 C A COMTD1 3'UTR 0.17 TCGA-DD-AADR-01 10 88428477 88428477 C A LDB3 Missense_Mutation p.P10H 0.21 deleterious(0) probably_damaging(1) TCGA-DD-AADR-01 11 108117798 108117798 C T ATM Missense_Mutation p.R337C 0.32 deleterious(0) probably_damaging(0.999) TCGA-DD-AADR-01 11 124743649 124743649 C T ROBO3 Missense_Mutation p.P559S 0.35 deleterious(0) probably_damaging(0.99) TCGA-DD-AADR-01 11 124747371 124747371 C G ROBO3 Intron 0.29 TCGA-DD-AADR-01 11 1275529 1275529 C A MUC5B Missense_Mutation p.S5142Y 0.31 unknown(0) TCGA-DD-AADR-01 11 129306802 129306802 C A BARX2 Missense_Mutation p.A115D 0.09 tolerated(0.17) benign(0.081) TCGA-DD-AADR-01 11 31653846 31653846 A C ELP4 Missense_Mutation p.N274T 0.27 tolerated(0.32) benign(0.021) TCGA-DD-AADR-01 11 320798 320798 G A IFITM3 Nonsense_Mutation p.Q6* 0.18 TCGA-DD-AADR-01 12 110778773 110778773 C T ATP2A2 Nonsense_Mutation p.Q691* 0.27 TCGA-DD-AADR-01 12 122626473 122626473 C G MLXIP 3'UTR 0.31 TCGA-DD-AADR-01 12 122656916 122656916 A C IL31 3'UTR 0.11 TCGA-DD-AADR-01 12 248119 248119 C A IQSEC3 Silent p.G530G 0.38 TCGA-DD-AADR-01 12 301770 301770 G A SLC6A12 Silent p.Y525Y 0.28 TCGA-DD-AADR-01 12 49725143 49725143 G C TROAP Missense_Mutation p.V749L 0.30 tolerated(0.13) benign(0.178) TCGA-DD-AADR-01 12 53691669 53691669 C T PFDN5 Silent p.H81H 0.09 TCGA-DD-AADR-01 12 53776141 53776141 C T SP1 Missense_Mutation p.S137F 0.34 deleterious(0.03) possibly_damaging(0.831) TCGA-DD-AADR-01 14 21966217 21966217 T G TOX4 3'UTR 0.40 TCGA-DD-AADR-01 14 73491249 73491249 T C ZFYVE1 5'UTR 0.48 TCGA-DD-AADR-01 14 74769675 74769675 C A ABCD4 5'UTR 0.07 TCGA-DD-AADR-01 15 51834633 51834633 T C DMXL2 Silent p.L334L 0.39 TCGA-DD-AADR-01 15 58430833 58430833 G A AQP9 Silent p.A23A 0.33 TCGA-DD-AADR-01 15 65702586 65702586 G A IGDCC4 Missense_Mutation p.H165Y 0.19 tolerated(0.12) benign(0.016) TCGA-DD-AADR-01 15 65943145 65943145 G A SLC24A1 Silent p.E886E 0.05 TCGA-DD-AADR-01 15 78568034 78568034 T C DNAJA4 Silent p.L310L 0.29 TCGA-DD-AADR-01 15 93588470 93588470 C A RGMA Nonsense_Mutation p.E379* 0.30 TCGA-DD-AADR-01 16 1411878 1411878 A C GNPTG Missense_Mutation p.K80T 0.30 deleterious(0) possibly_damaging(0.51) TCGA-DD-AADR-01 16 2086328 2086328 G A SLC9A3R2 Missense_Mutation p.V140I 0.07 tolerated(0.28) benign(0.004) TCGA-DD-AADR-01 16 50106513 50106513 T C HEATR3 Intron 0.15 TCGA-DD-AADR-01 17 10397950 10397950 C T MYH1 Missense_Mutation p.R1836H 0.44 deleterious(0.03) benign(0.011) TCGA-DD-AADR-01 17 38137181 38137181 G T PSMD3 5'UTR 0.24 TCGA-DD-AADR-01 17 45219595 45219595 C A CDC27 Nonsense_Mutation p.E466* 0.29 TCGA-DD-AADR-01 17 48227117 48227117 C G PPP1R9B Silent p.P252P 0.09 TCGA-DD-AADR-01 17 61620964 61620964 C T KCNH6 Nonsense_Mutation p.R726* 0.34 TCGA-DD-AADR-01 17 72846852 72846852 A G GRIN2C Missense_Mutation p.Y390H 0.27 deleterious(0.03) probably_damaging(0.95) TCGA-DD-AADR-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.10 TCGA-DD-AADR-01 17 7916472 7916472 G A GUCY2D Missense_Mutation p.R722Q 0.60 tolerated(0.22) benign(0.017) TCGA-DD-AADR-01 18 43708091 43708091 A G HAUS1 Nonstop_Mutation p.*279Wext*10 0.22 TCGA-DD-AADR-01 18 44137363 44137363 C A LOXHD1 5'UTR 0.17 TCGA-DD-AADR-01 18 74728894 74728894 T C MBP Missense_Mutation p.H157R 0.24 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-DD-AADR-01 19 11891553 11891553 A T ZNF441 Missense_Mutation p.D305V 0.35 tolerated(0.08) probably_damaging(0.942) TCGA-DD-AADR-01 19 14591237 14591237 C A GIPC1 Nonsense_Mutation p.E179* 0.31 TCGA-DD-AADR-01 19 32845669 32845669 C T ZNF507 Silent p.L645L 0.26 TCGA-DD-AADR-01 19 40368348 40368348 C T FCGBP Missense_Mutation p.A4334T 0.15 probably_damaging(0.992) TCGA-DD-AADR-01 19 44681455 44681455 C T ZNF226 Silent p.F680F 0.03 TCGA-DD-AADR-01 19 51633222 51633222 G - SIGLEC9 Intron 0.22 TCGA-DD-AADR-01 19 58579348 58579348 G A ZNF135 Missense_Mutation p.C523Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-DD-AADR-01 1 115223060 115223060 C T AMPD1 Missense_Mutation p.R229Q 0.26 tolerated(0.49) benign(0.001) TCGA-DD-AADR-01 1 120484359 120484359 C A NOTCH2 Missense_Mutation p.G924V 0.39 deleterious(0) possibly_damaging(0.542) TCGA-DD-AADR-01 1 149783278 149783278 G C HIST2H2BF Intron 0.30 TCGA-DD-AADR-01 1 152280186 152280186 A T FLG Missense_Mutation p.H2392Q 0.26 benign(0.227) TCGA-DD-AADR-01 1 153955796 153955796 T C RAB13 Intron 0.45 TCGA-DD-AADR-01 1 162353116 162353116 A G C1orf226 Silent p.P197P 0.38 TCGA-DD-AADR-01 1 171750947 171750947 T G METTL13 5'UTR 0.38 TCGA-DD-AADR-01 1 197704827 197704827 A T DENND1B Intron 0.32 TCGA-DD-AADR-01 1 21072039 21072039 C G HP1BP3 Missense_Mutation p.R455T 0.59 deleterious_low_confidence(0) possibly_damaging(0.452) TCGA-DD-AADR-01 1 224415337 224415337 G A NVL Silent p.L854L 0.28 TCGA-DD-AADR-01 1 228487195 228487195 G A OBSCN Silent p.E4482E 0.19 TCGA-DD-AADR-01 1 234541649 234541649 C T TARBP1 Missense_Mutation p.G1330E 0.32 deleterious(0) probably_damaging(1) TCGA-DD-AADR-01 1 235916449 235916451 AGA - LYST In_Frame_Del p.L2452del 0.32 TCGA-DD-AADR-01 1 23689582 23689582 C T ZNF436 Missense_Mutation p.S98N 0.60 tolerated(0.49) benign(0) TCGA-DD-AADR-01 1 27023388 27023388 C - ARID1A Frame_Shift_Del p.A165Gfs*67 0.25 TCGA-DD-AADR-01 1 84386928 84386928 A G TTLL7 Splice_Site p.X430_splice 0.38 TCGA-DD-AADR-01 1 95609526 95609526 C G TMEM56 Missense_Mutation p.F23L 0.44 deleterious(0) probably_damaging(0.971) TCGA-DD-AADR-01 20 278367 278367 T C ZCCHC3 Missense_Mutation p.L47P 0.25 deleterious_low_confidence(0) possibly_damaging(0.766) TCGA-DD-AADR-01 20 43738425 43738425 C G WFDC5 3'UTR 0.28 TCGA-DD-AADR-01 20 60448832 60448832 C A CDH4 Missense_Mutation p.T309K 0.41 deleterious(0.01) probably_damaging(0.968) TCGA-DD-AADR-01 21 46912479 46912479 G A COL18A1 Splice_Site p.X909_splice 0.14 TCGA-DD-AADR-01 22 18300582 18300582 C A MICAL3 Missense_Mutation p.R1615S 0.39 benign(0.036) TCGA-DD-AADR-01 22 44282291 44282291 C T PNPLA5 Missense_Mutation p.G281S 0.16 tolerated(0.15) benign(0.062) TCGA-DD-AADR-01 22 50599978 50599978 C T MOV10L1 3'UTR 0.26 TCGA-DD-AADR-01 2 110374337 110374337 T A SOWAHC 3'UTR 0.37 TCGA-DD-AADR-01 2 166172100 166172100 G T SCN2A Silent p.L501L 0.34 TCGA-DD-AADR-01 2 179330339 179330339 A G FKBP7 3'UTR 0.37 TCGA-DD-AADR-01 2 179474547 179474547 C A TTN Silent p.L17201L 0.22 TCGA-DD-AADR-01 2 204267450 204267450 G C ABI2 Missense_Mutation p.Q328H 0.35 deleterious(0.04) benign(0.069) TCGA-DD-AADR-01 2 208477647 208477647 C T METTL21A 3'UTR 0.16 TCGA-DD-AADR-01 2 232028365 232028365 A G PSMD1 Missense_Mutation p.Y802C 0.38 deleterious(0) possibly_damaging(0.76) TCGA-DD-AADR-01 2 233323747 233323747 G A ALPI Missense_Mutation p.C493Y 0.49 deleterious(0.01) benign(0.273) TCGA-DD-AADR-01 2 74692368 74692368 G A MOGS Missense_Mutation p.R3W 0.45 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-DD-AADR-01 2 74842177 74842177 G A M1AP Silent p.L114L 0.37 TCGA-DD-AADR-01 2 98833369 98833369 C T VWA3B Intron 0.42 TCGA-DD-AADR-01 3 121208342 121208342 C T POLQ Missense_Mutation p.V1146M 0.38 tolerated_low_confidence(0.21) benign(0.008) TCGA-DD-AADR-01 3 125271474 125271474 T C OSBPL11 Missense_Mutation p.Y402C 0.29 deleterious(0) probably_damaging(1) TCGA-DD-AADR-01 3 128631606 128631606 C G ACAD9 3'UTR 0.53 TCGA-DD-AADR-01 3 128753168 128753168 A G EFCC1 Missense_Mutation p.E482G 0.46 deleterious(0) benign(0.242) TCGA-DD-AADR-01 3 129127685 129127685 A G EFCAB12 Missense_Mutation p.I351T 0.47 deleterious(0.02) probably_damaging(0.964) TCGA-DD-AADR-01 3 133486989 133486989 G A TF Missense_Mutation p.G535S 0.37 deleterious(0.02) probably_damaging(0.976) TCGA-DD-AADR-01 3 152173338 152173338 A G MBNL1 Intron 0.32 TCGA-DD-AADR-01 3 15300902 15300902 A C SH3BP5 Intron 0.40 TCGA-DD-AADR-01 3 18390666 18390666 T C SATB1 Missense_Mutation p.D795G 0.32 deleterious_low_confidence(0) possibly_damaging(0.71) TCGA-DD-AADR-01 3 49753432 49753432 C T RNF123 Missense_Mutation p.R1110C 0.42 deleterious(0) probably_damaging(0.994) TCGA-DD-AADR-01 3 49932696 49932696 G A MST1R Silent p.L1059L 0.29 TCGA-DD-AADR-01 3 55521145 55521145 C G WNT5A 5'UTR 0.21 TCGA-DD-AADR-01 3 98240573 98240573 C T CLDND1 Intron 0.35 TCGA-DD-AADR-01 3 98299597 98299597 G A CPOX Missense_Mutation p.S432L 0.29 tolerated(0.16) benign(0.016) TCGA-DD-AADR-01 3 9975230 9975230 C T IL17RC Missense_Mutation p.R777C 0.27 tolerated_low_confidence(0.07) unknown(0) TCGA-DD-AADR-01 4 11400676 11400676 G C HS3ST1 3'UTR 0.35 TCGA-DD-AADR-01 4 122853582 122853582 C T TRPC3 Silent p.R277R 0.08 TCGA-DD-AADR-01 4 126336041 126336041 A T FAT4 Missense_Mutation p.I1975F 0.06 benign(0.005) TCGA-DD-AADR-01 4 129778563 129778563 C A JADE1 Missense_Mutation p.A312E 0.52 deleterious(0) possibly_damaging(0.844) TCGA-DD-AADR-01 4 146041189 146041189 A C ABCE1 Missense_Mutation p.K343T 0.49 tolerated(0.18) benign(0.015) TCGA-DD-AADR-01 4 156136959 156136959 C G NPY2R 3'UTR 0.50 TCGA-DD-AADR-01 4 16900005 16900005 A G LDB2 Missense_Mutation p.M35T 0.29 deleterious(0) benign(0.369) TCGA-DD-AADR-01 4 17616334 17616342 CCCGCCGGG - MED28 In_Frame_Del p.P20_G22del 0.38 TCGA-DD-AADR-01 4 39904058 39904058 C A PDS5A Missense_Mutation p.A470S 0.35 tolerated(0.72) possibly_damaging(0.771) TCGA-DD-AADR-01 4 73148748 73148748 G T ADAMTS3 3'UTR 0.46 TCGA-DD-AADR-01 4 73943157 73943157 T G ANKRD17 Missense_Mutation p.E2501A 0.07 benign(0.001) TCGA-DD-AADR-01 4 79531270 79531270 A G ANXA3 3'UTR 0.49 TCGA-DD-AADR-01 5 121488330 121488330 C T ZNF474 Silent p.T215T 0.38 TCGA-DD-AADR-01 5 140075365 140075365 G - HARS2 Frame_Shift_Del p.A190Qfs*4 0.20 TCGA-DD-AADR-01 5 140768944 140768944 A G PCDHGB4 Missense_Mutation p.E498G 0.32 deleterious(0.01) benign(0.065) TCGA-DD-AADR-01 5 41382514 41382514 A T PLCXD3 Missense_Mutation p.W76R 0.37 deleterious(0) probably_damaging(1) TCGA-DD-AADR-01 5 72742744 72742744 G A FOXD1 3'UTR 0.31 TCGA-DD-AADR-01 6 119228720 119228720 T C ASF1A Missense_Mutation p.W186R 0.55 tolerated(0.32) benign(0.001) TCGA-DD-AADR-01 6 158535862 158535862 T C SERAC1 Missense_Mutation p.Y548C 0.46 deleterious(0) probably_damaging(0.975) TCGA-DD-AADR-01 6 30918187 30918187 C T DPCR1 Missense_Mutation p.A649V 0.42 tolerated(0.1) benign(0.023) TCGA-DD-AADR-01 6 31833748 31833748 G A SLC44A4 Silent p.C463C 0.03 TCGA-DD-AADR-01 6 31895872 31895872 C A CFB Missense_Mutation p.L63M 0.36 tolerated(0.25) benign(0.032) TCGA-DD-AADR-01 6 36298079 36298079 G A C6orf222 Missense_Mutation p.S130F 0.40 tolerated(0.06) benign(0.265) TCGA-DD-AADR-01 6 42796515 42796515 C G GLTSCR1L Silent p.S148S 0.38 TCGA-DD-AADR-01 6 57037162 57037162 G A BAG2 5'UTR 0.50 TCGA-DD-AADR-01 6 85446578 85446578 G T TBX18 Missense_Mutation p.S550Y 0.39 deleterious(0.01) probably_damaging(0.986) TCGA-DD-AADR-01 7 100160302 100160302 G A AGFG2 Missense_Mutation p.G362R 0.50 deleterious(0) probably_damaging(0.944) TCGA-DD-AADR-01 7 100483551 100483552 - A SRRT Frame_Shift_Ins p.N484Efs*8 0.23 TCGA-DD-AADR-01 7 100732328 100732328 G A TRIM56 Missense_Mutation p.V579M 0.28 deleterious(0.01) possibly_damaging(0.703) TCGA-DD-AADR-01 7 107558474 107558474 G A DLD Missense_Mutation p.D448N 0.20 deleterious(0) probably_damaging(0.966) TCGA-DD-AADR-01 7 107818532 107818532 C A NRCAM Missense_Mutation p.K959N 0.33 tolerated(0.19) possibly_damaging(0.791) TCGA-DD-AADR-01 7 143881267 143881267 A C CTAGE4 Missense_Mutation p.K224T 0.17 tolerated(0.08) benign(0.105) TCGA-DD-AADR-01 7 149419576 149419576 G T KRBA1 Missense_Mutation p.S177I 0.30 tolerated(0.09) probably_damaging(0.975) TCGA-DD-AADR-01 7 44005533 44005533 C T RP5-1165K10.2 RNA 0.32 TCGA-DD-AADR-01 7 4815305 4815305 T A AP5Z1 5'UTR 0.38 TCGA-DD-AADR-01 7 6189723 6189723 G A USP42 Silent p.V632V 0.23 TCGA-DD-AADR-01 7 92191657 92191657 T A FAM133B Missense_Mutation p.H228L 0.31 tolerated_low_confidence(0.35) unknown(0) TCGA-DD-AADR-01 7 92244266 92244266 C T CDK6 3'UTR 0.26 TCGA-DD-AADR-01 7 96650094 96650094 C T DLX5 Missense_Mutation p.G275D 0.32 tolerated(0.18) benign(0.441) TCGA-DD-AADR-01 8 141716266 141716266 T C PTK2 Silent p.E727E 0.16 TCGA-DD-AADR-01 8 30361845 30361845 G T RBPMS Nonsense_Mutation p.E97* 0.31 TCGA-DD-AADR-01 8 80992707 80992707 G A TPD52 5'UTR 0.06 TCGA-DD-AADR-01 8 85774619 85774619 A C RALYL Silent p.R181R 0.14 TCGA-DD-AADR-01 8 95182668 95182668 C T CDH17 Silent p.P341P 0.07 TCGA-DD-AADR-01 9 127619833 127619834 - A WDR38 Frame_Shift_Ins p.V291Sfs*9 0.14 TCGA-DD-AADR-01 9 36169649 36169649 C A CCIN Silent p.S50S 0.39 TCGA-DD-AADR-01 9 79635418 79635418 T A FOXB2 Missense_Mutation p.V283E 0.32 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-DD-AADR-01 9 79922965 79922965 A G VPS13A Silent p.Q1355Q 0.26 TCGA-DD-AADR-01 X 140336533 140336533 C A SPANXC Nonsense_Mutation p.E20* 0.74 TCGA-DD-AADR-01 X 17745169 17745169 A - NHS Frame_Shift_Del p.E961Rfs*87 0.41 TCGA-DD-AADR-01 X 53576460 53576460 A G HUWE1 Silent p.S3165S 0.64 TCGA-DD-AADS-01 10 101439111 101439111 C G ENTPD7 Silent p.S95S 0.31 TCGA-DD-AADS-01 10 118394381 118394381 C G PNLIPRP2 Missense_Mutation p.L283V 0.05 tolerated(0.08) possibly_damaging(0.478) TCGA-DD-AADS-01 10 134219298 134219298 A G PWWP2B Missense_Mutation p.R432G 0.38 deleterious(0) benign(0.076) TCGA-DD-AADS-01 10 135011997 135011997 T A KNDC1 Missense_Mutation p.V688E 0.36 tolerated(0.19) benign(0.026) TCGA-DD-AADS-01 10 135169315 135169315 T C FUOM Missense_Mutation p.R109G 0.35 tolerated(0.4) benign(0) TCGA-DD-AADS-01 10 17191063 17191063 T C TRDMT1 Silent p.K384K 0.33 TCGA-DD-AADS-01 10 35930122 35930122 T C FZD8 Missense_Mutation p.Q79R 0.29 tolerated(0.09) unknown(0) TCGA-DD-AADS-01 10 46998926 46998926 C T GPRIN2 Missense_Mutation p.P16S 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.676) TCGA-DD-AADS-01 10 73560473 73560473 T A CDH23 Silent p.P241P 0.37 TCGA-DD-AADS-01 10 7627891 7627891 A T ITIH5 Missense_Mutation p.Y361N 0.34 deleterious(0) possibly_damaging(0.662) TCGA-DD-AADS-01 11 121986893 121986893 T A BLID 5'UTR 0.32 TCGA-DD-AADS-01 11 130131553 130131587 CAACACATTCTTGTTCTCATCCTCGGCTTGGCCTA - ZBTB44 Frame_Shift_Del p.V61Gfs*25 0.15 TCGA-DD-AADS-01 11 27114795 27114795 A T BBOX1 Nonsense_Mutation p.K139* 0.33 TCGA-DD-AADS-01 11 36422597 36422597 C T PRR5L 5'UTR 0.22 TCGA-DD-AADS-01 11 47361216 47361216 T A MYBPC3 Nonsense_Mutation p.K685* 0.49 TCGA-DD-AADS-01 11 62402314 62402314 T C GANAB Missense_Mutation p.H180R 0.38 deleterious(0) possibly_damaging(0.835) TCGA-DD-AADS-01 11 62572918 62572918 T A NXF1 5'UTR 0.45 TCGA-DD-AADS-01 11 65366954 65366954 G A MAP3K11 Missense_Mutation p.P706L 0.41 tolerated_low_confidence(0.18) benign(0.002) TCGA-DD-AADS-01 11 770992 770992 C A PDDC1 Splice_Site p.X219_splice 0.37 TCGA-DD-AADS-01 12 102512230 102512230 C T NUP37 Missense_Mutation p.E23K 0.25 deleterious(0.02) benign(0.242) TCGA-DD-AADS-01 12 10588437 10588437 A T KLRC2 Missense_Mutation p.L50Q 0.35 tolerated(1) benign(0.001) TCGA-DD-AADS-01 12 21713357 21713357 C T GYS2 Missense_Mutation p.E378K 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-DD-AADS-01 12 351921 351936 CTGCGGGGAAACTGCA - SLC6A13 Splice_Site p.X113_splice 0.40 TCGA-DD-AADS-01 12 4735824 4735824 G T AKAP3 Silent p.P748P 0.37 TCGA-DD-AADS-01 12 54367150 54367150 C A HOXC11 Missense_Mutation p.P42H 0.32 deleterious(0) probably_damaging(0.997) TCGA-DD-AADS-01 12 6982127 6982127 A C SPSB2 5'UTR 0.49 TCGA-DD-AADS-01 12 8085600 8085600 G A SLC2A3 Silent p.F84F 0.38 TCGA-DD-AADS-01 12 80928788 80928788 A G PTPRQ Missense_Mutation p.Y982C 0.29 deleterious(0) probably_damaging(0.986) TCGA-DD-AADS-01 12 8998818 8998818 G - A2ML1 Frame_Shift_Del 0.24 TCGA-DD-AADS-01 12 97045531 97045531 T G C12orf55 Missense_Mutation p.Y1680D 0.31 deleterious(0) possibly_damaging(0.813) TCGA-DD-AADS-01 13 107165124 107165124 C T EFNB2 Silent p.Q53Q 0.34 TCGA-DD-AADS-01 13 20797574 20797574 G A GJB6 Missense_Mutation p.H16Y 0.28 tolerated(1) benign(0.062) TCGA-DD-AADS-01 13 51936118 51936118 T C SERPINE3 Silent p.N420N 0.05 TCGA-DD-AADS-01 14 23548222 23548222 T C ACIN1 Missense_Mutation p.D663G 0.34 benign(0.13) TCGA-DD-AADS-01 14 55516164 55516165 - T SOCS4 3'UTR 0.25 TCGA-DD-AADS-01 14 74343770 74343770 T A PTGR2 Missense_Mutation p.S140T 0.25 deleterious(0) benign(0.124) TCGA-DD-AADS-01 14 76135787 76135787 G A TTLL5 Missense_Mutation p.G35S 0.08 tolerated(0.37) benign(0.253) TCGA-DD-AADS-01 14 91044612 91044612 T A TTC7B Silent p.T716T 0.34 TCGA-DD-AADS-01 15 41313274 41313274 T A INO80 Missense_Mutation p.Y1033F 0.30 tolerated(0.08) benign(0.012) TCGA-DD-AADS-01 15 41812892 41812892 C T RPAP1 Silent p.L1164L 0.31 TCGA-DD-AADS-01 15 42458405 42458405 G C VPS39 Missense_Mutation p.F544L 0.34 tolerated(0.77) benign(0.014) TCGA-DD-AADS-01 15 48055213 48055213 A T SEMA6D Missense_Mutation p.E220V 0.45 deleterious(0.01) possibly_damaging(0.79) TCGA-DD-AADS-01 15 48495677 48495677 C A CTXN2 3'UTR 0.33 TCGA-DD-AADS-01 15 63901193 63901193 T A HERC1 3'UTR 0.29 TCGA-DD-AADS-01 15 74327545 74327545 G C PML Intron 0.18 TCGA-DD-AADS-01 15 80478641 80478641 G A FAH 3'UTR 0.29 TCGA-DD-AADS-01 15 81225646 81225646 G - KIAA1199 Frame_Shift_Del p.D953Ifs*64 0.20 TCGA-DD-AADS-01 15 92647605 92647605 T A SLCO3A1 Nonsense_Mutation p.L281* 0.29 TCGA-DD-AADS-01 16 2203207 2203207 T C RAB26 Missense_Mutation p.F218L 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-DD-AADS-01 16 29127841 29127841 C T RP11-426C22.5 Intron 0.32 TCGA-DD-AADS-01 16 347192 347192 T A AXIN1 Nonsense_Mutation p.K607* 0.42 TCGA-DD-AADS-01 16 8989502 8989502 T C USP7 Missense_Mutation p.I972M 0.27 deleterious(0) probably_damaging(0.945) TCGA-DD-AADS-01 17 10216060 10216060 T A MYH13 Missense_Mutation p.Q1399L 0.29 tolerated(0.31) probably_damaging(0.988) TCGA-DD-AADS-01 17 10405132 10405132 T A MYH1 Missense_Mutation p.T1070S 0.36 deleterious(0.03) benign(0.03) TCGA-DD-AADS-01 17 1384146 1384146 G C MYO1C Missense_Mutation p.L221V 0.23 deleterious(0) probably_damaging(0.999) TCGA-DD-AADS-01 17 27448104 27448104 A G MYO18A Silent p.S499S 0.36 TCGA-DD-AADS-01 17 31618817 31618817 T C ASIC2 Missense_Mutation p.N106S 0.30 tolerated(0.1) benign(0.045) TCGA-DD-AADS-01 17 34328687 34328687 A G CCL15 5'UTR 0.28 TCGA-DD-AADS-01 17 39388751 39388751 A T KRTAP9-3 5'UTR 0.26 TCGA-DD-AADS-01 17 39623382 39623382 A T KRT32 Missense_Mutation p.Y66N 0.41 tolerated(0.24) benign(0.143) TCGA-DD-AADS-01 17 39670928 39670928 T A KRT15 Splice_Site p.X416_splice 0.34 TCGA-DD-AADS-01 17 48627450 48627450 G A SPATA20 Missense_Mutation p.G323R 0.39 deleterious(0) probably_damaging(1) TCGA-DD-AADS-01 17 71429982 71429982 C T SDK2 Missense_Mutation p.A401T 0.28 tolerated(0.07) benign(0.368) TCGA-DD-AADS-01 18 20570915 20570915 A C RBBP8 Missense_Mutation p.M275L 0.33 tolerated(1) benign(0.001) TCGA-DD-AADS-01 18 335067 335067 G A COLEC12 Silent p.G497G 0.45 TCGA-DD-AADS-01 18 33846710 33846710 A T MOCOS Splice_Site p.X804_splice 0.05 TCGA-DD-AADS-01 18 346985 346985 G T COLEC12 Missense_Mutation p.Q213K 0.34 deleterious(0.02) possibly_damaging(0.678) TCGA-DD-AADS-01 18 42643752 42643752 A G SETBP1 3'UTR 0.36 TCGA-DD-AADS-01 18 43703316 43703316 G T HAUS1 Missense_Mutation p.V218L 0.27 tolerated(0.11) benign(0.02) TCGA-DD-AADS-01 18 61627540 61627540 A G HMSD Missense_Mutation p.N124S 0.47 tolerated(0.89) benign(0.009) TCGA-DD-AADS-01 18 9255216 9255216 A G ANKRD12 Missense_Mutation p.K651E 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DD-AADS-01 19 10980141 10980141 A T C19orf38 3'UTR 0.38 TCGA-DD-AADS-01 19 15355195 15355195 G A BRD4 Missense_Mutation p.P810S 0.37 benign(0.044) TCGA-DD-AADS-01 19 19905366 19905366 T C ZNF506 Missense_Mutation p.R444G 0.28 deleterious_low_confidence(0) benign(0.037) TCGA-DD-AADS-01 19 21300669 21300669 A T ZNF714 Missense_Mutation p.E400V 0.27 deleterious(0.01) possibly_damaging(0.745) TCGA-DD-AADS-01 19 43859672 43859672 A T CD177 Missense_Mutation p.M129L 0.47 tolerated(0.73) benign(0) TCGA-DD-AADS-01 19 45209000 45209000 G C CEACAM16 Missense_Mutation p.G268R 0.33 deleterious(0) probably_damaging(1) TCGA-DD-AADS-01 19 50766619 50766619 G T MYH14 Missense_Mutation p.R879L 0.36 deleterious(0) probably_damaging(0.998) TCGA-DD-AADS-01 19 51485634 51485634 G T KLK7 Missense_Mutation p.P8T 0.27 tolerated(0.23) unknown(0) TCGA-DD-AADS-01 19 54314495 54314495 T A NLRP12 Missense_Mutation p.M140L 0.31 deleterious(0.04) benign(0.077) TCGA-DD-AADS-01 19 9043453 9043453 G T MUC16 Missense_Mutation p.H12026N 0.38 benign(0.003) TCGA-DD-AADS-01 1 11249740 11249740 C T ANGPTL7 Missense_Mutation p.P35L 0.37 tolerated_low_confidence(0.11) benign(0.007) TCGA-DD-AADS-01 1 116574319 116574319 T A SLC22A15 Intron 0.26 TCGA-DD-AADS-01 1 118496504 118496504 G C SPAG17 3'UTR 0.17 TCGA-DD-AADS-01 1 144892215 144892215 T A PDE4DIP Intron 0.17 TCGA-DD-AADS-01 1 152323287 152323287 T A FLG2 Silent p.A2325A 0.34 TCGA-DD-AADS-01 1 152734084 152734084 C G KPRP 3'UTR 0.06 TCGA-DD-AADS-01 1 155319387 155319387 T C ASH1L Missense_Mutation p.D2456G 0.35 tolerated_low_confidence(0.05) probably_damaging(0.997) TCGA-DD-AADS-01 1 157805814 157805814 G A CD5L Missense_Mutation p.R63W 0.37 deleterious(0.03) benign(0.284) TCGA-DD-AADS-01 1 158595952 158595952 G T SPTA1 Missense_Mutation p.T1965N 0.31 deleterious(0.03) benign(0.424) TCGA-DD-AADS-01 1 159772232 159772232 T A FCRL6 Silent p.A6A 0.27 TCGA-DD-AADS-01 1 167973163 167973163 A G DCAF6 Silent p.R351R 0.38 TCGA-DD-AADS-01 1 169446983 169446983 T C SLC19A2 Missense_Mutation p.I73V 0.39 tolerated(0.21) possibly_damaging(0.823) TCGA-DD-AADS-01 1 228109383 228109383 T A WNT9A Missense_Mutation p.R312W 0.34 deleterious(0.02) possibly_damaging(0.893) TCGA-DD-AADS-01 1 228447295 228447295 A T OBSCN Missense_Mutation p.Q1652L 0.33 benign(0.013) TCGA-DD-AADS-01 1 230492898 230492898 C G PGBD5 Missense_Mutation p.M98I 0.28 tolerated(0.32) benign(0.032) TCGA-DD-AADS-01 1 233388234 233388234 T C PCNXL2 Missense_Mutation p.N665S 0.36 tolerated(0.77) benign(0.003) TCGA-DD-AADS-01 1 237814791 237814791 T A RYR2 Missense_Mutation p.M2605K 0.37 possibly_damaging(0.581) TCGA-DD-AADS-01 1 240370818 240370818 G T FMN2 Silent p.L902L 0.40 TCGA-DD-AADS-01 1 241912886 241912886 G A WDR64 Silent p.E534E 0.12 TCGA-DD-AADS-01 1 247752022 247752022 A T OR2G2 Missense_Mutation p.M121L 0.25 deleterious(0) benign(0.411) TCGA-DD-AADS-01 1 248512548 248512548 A T OR14C36 Missense_Mutation p.T158S 0.24 deleterious(0.04) probably_damaging(0.984) TCGA-DD-AADS-01 1 26230232 26230232 T A STMN1 Missense_Mutation p.K29I 0.27 tolerated(0.26) benign(0.244) TCGA-DD-AADS-01 1 47279879 47279879 A G CYP4B1 Splice_Site p.X259_splice 0.30 TCGA-DD-AADS-01 1 47400132 47400132 A G CYP4A11 Missense_Mutation p.L297S 0.26 tolerated(0.69) benign(0.012) TCGA-DD-AADS-01 1 53715077 53715077 G A LRP8 Missense_Mutation p.S943F 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.615) TCGA-DD-AADS-01 1 62676178 62676178 A T L1TD1 Missense_Mutation p.S578C 0.33 deleterious(0) probably_damaging(0.995) TCGA-DD-AADS-01 20 21377078 21377078 A C NKX2-4 Missense_Mutation p.L179R 0.51 deleterious(0.01) probably_damaging(0.998) TCGA-DD-AADS-01 20 30227900 30227900 T A COX4I2 Missense_Mutation p.L83M 0.20 deleterious(0) probably_damaging(0.993) TCGA-DD-AADS-01 20 30946482 30946482 C T ASXL1 5'UTR 0.65 TCGA-DD-AADS-01 20 37597805 37597806 - T DHX35 Frame_Shift_Ins p.Y42Lfs*19 0.11 TCGA-DD-AADS-01 20 39709835 39709835 A G TOP1 Silent p.T154T 0.17 TCGA-DD-AADS-01 20 58468254 58468254 C G SYCP2 Missense_Mutation p.S579T 0.05 deleterious(0.04) benign(0.033) TCGA-DD-AADS-01 20 746252 746252 A C SLC52A3 Missense_Mutation p.L56R 0.64 deleterious(0) probably_damaging(0.977) TCGA-DD-AADS-01 21 19666622 19666622 A T TMPRSS15 Missense_Mutation p.S817R 0.35 tolerated(0.88) benign(0.004) TCGA-DD-AADS-01 21 41384846 41384846 T A DSCAM 3'UTR 0.26 TCGA-DD-AADS-01 22 24135767 24135767 C A SMARCB1 Missense_Mutation p.A85D 0.52 deleterious(0.03) benign(0.273) TCGA-DD-AADS-01 22 30035159 30035159 G T NF2 Missense_Mutation p.E107D 0.57 tolerated(0.13) benign(0.142) TCGA-DD-AADS-01 22 30035160 30035160 G T NF2 Nonsense_Mutation p.E108* 0.59 TCGA-DD-AADS-01 22 46327010 46327010 T A WNT7B Missense_Mutation p.M180L 0.55 deleterious(0.04) possibly_damaging(0.728) TCGA-DD-AADS-01 2 108614395 108614395 G T SLC5A7 Missense_Mutation p.V184L 0.36 deleterious(0) probably_damaging(0.996) TCGA-DD-AADS-01 2 138414490 138414490 G T THSD7B Missense_Mutation p.E1413D 0.29 deleterious(0.04) unknown(0) TCGA-DD-AADS-01 2 166210790 166210790 T C SCN2A Missense_Mutation p.L1003P 0.39 deleterious(0) probably_damaging(0.996) TCGA-DD-AADS-01 2 168106385 168106385 T C XIRP2 Missense_Mutation p.I2828T 0.32 benign(0.015) TCGA-DD-AADS-01 2 171863315 171863315 T A TLK1 Silent p.T531T 0.35 TCGA-DD-AADS-01 2 172180555 172180555 T A METTL8 3'UTR 0.21 TCGA-DD-AADS-01 2 192818525 192818525 T C TMEFF2 Missense_Mutation p.K303R 0.23 tolerated(0.47) probably_damaging(0.978) TCGA-DD-AADS-01 2 198415422 198415422 A T HSPE1-MOB4 3'UTR 0.30 TCGA-DD-AADS-01 2 210560650 210560650 A T MAP2 Silent p.S1252S 0.45 TCGA-DD-AADS-01 2 215823030 215823030 A T ABCA12 Missense_Mutation p.Y2030N 0.32 deleterious(0) probably_damaging(1) TCGA-DD-AADS-01 2 220466361 220466361 A T STK11IP Splice_Site p.X101_splice 0.26 TCGA-DD-AADS-01 2 230638898 230638898 G C TRIP12 Missense_Mutation p.T1795S 0.39 deleterious(0.01) probably_damaging(0.989) TCGA-DD-AADS-01 2 234299052 234299052 A G DGKD Missense_Mutation p.I91V 0.44 tolerated(0.56) benign(0.217) TCGA-DD-AADS-01 2 54873140 54873140 A G SPTBN1 Missense_Mutation p.I1524V 0.39 tolerated(0.14) benign(0.065) TCGA-DD-AADS-01 3 121976018 121976018 G T CASR Silent p.T92T 0.30 TCGA-DD-AADS-01 3 151474865 151474865 C T AADACL2 Missense_Mutation p.P230L 0.39 deleterious(0) probably_damaging(1) TCGA-DD-AADS-01 3 167196576 167196576 T A WDR49 3'UTR 0.28 TCGA-DD-AADS-01 3 187416345 187416345 A T RTP2 Missense_Mutation p.S207T 0.34 tolerated(0.68) benign(0.001) TCGA-DD-AADS-01 3 4354838 4354838 A C SETMAR Missense_Mutation p.Q138P 0.29 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-DD-AADS-01 3 47044767 47044767 C T NBEAL2 Silent p.L1896L 0.33 TCGA-DD-AADS-01 3 52328447 52328447 G T GLYCTK 3'Flank 0.19 TCGA-DD-AADS-01 3 57913140 57913140 G A SLMAP 3'UTR 0.34 TCGA-DD-AADS-01 3 69026708 69026708 A C EOGT 3'UTR 0.34 TCGA-DD-AADS-01 3 69788758 69788758 G T MITF Nonsense_Mutation p.E4* 0.22 TCGA-DD-AADS-01 3 7348194 7348194 T A GRM7 Silent p.L296L 0.37 TCGA-DD-AADS-01 3 93755562 93755562 A - ARL13B Frame_Shift_Del p.R219Efs*42 0.25 TCGA-DD-AADS-01 4 120241841 120241841 T A FABP2 Missense_Mutation p.D75V 0.33 deleterious(0) probably_damaging(0.966) TCGA-DD-AADS-01 4 143324209 143324209 T A INPP4B Splice_Site p.X86_splice 0.35 TCGA-DD-AADS-01 4 185138927 185138927 G A ENPP6 Silent p.L16L 0.26 TCGA-DD-AADS-01 4 46067562 46067562 C A GABRG1 Missense_Mutation p.D121Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-DD-AADS-01 4 48542570 48542571 TG A FRYL Frame_Shift_Del p.H2032Ffs*20 0.23 TCGA-DD-AADS-01 4 57325638 57325638 A T PAICS Silent p.A411A 0.33 TCGA-DD-AADS-01 4 69962793 69962793 A G UGT2B7 Silent p.G185G 0.38 TCGA-DD-AADS-01 4 74702771 74702771 A T CXCL6 Missense_Mutation p.Q67L 0.34 deleterious(0) probably_damaging(0.953) TCGA-DD-AADS-01 5 102423457 102423457 T G GIN1 3'UTR 0.33 TCGA-DD-AADS-01 5 1034416 1034416 T A NKD2 Missense_Mutation p.F133I 0.26 deleterious(0) benign(0.426) TCGA-DD-AADS-01 5 11098730 11098730 C A CTNND2 Missense_Mutation p.G865V 0.05 deleterious(0) probably_damaging(0.997) TCGA-DD-AADS-01 5 1266629 1266629 A G TERT Silent p.D868D 0.39 TCGA-DD-AADS-01 5 131607059 131607059 G T PDLIM4 Silent p.V190V 0.29 TCGA-DD-AADS-01 5 137753199 137753199 A T KDM3B Missense_Mutation p.H1112L 0.04 deleterious(0) probably_damaging(0.999) TCGA-DD-AADS-01 5 140255480 140255480 T A PCDHA12 Silent p.P141P 0.34 TCGA-DD-AADS-01 5 140262777 140262777 A T PCDHA13 Silent p.L308L 0.36 TCGA-DD-AADS-01 5 140348697 140348697 A G PCDHAC2 Silent p.R782R 0.34 TCGA-DD-AADS-01 5 140564018 140564018 G T PCDHB16 Missense_Mutation p.R628S 0.28 deleterious_low_confidence(0) possibly_damaging(0.792) TCGA-DD-AADS-01 5 141334585 141334585 G A PCDH12 Silent p.A944A 0.27 TCGA-DD-AADS-01 5 146780396 146780396 G T DPYSL3 Missense_Mutation p.S437R 0.20 tolerated(0.23) benign(0.014) TCGA-DD-AADS-01 5 161580332 161580332 C G GABRG2 Missense_Mutation p.C502W 0.26 deleterious(0.05) probably_damaging(0.915) TCGA-DD-AADS-01 5 17276788 17276788 C T BASP1 3'UTR 0.39 TCGA-DD-AADS-01 5 52235677 52235677 A G ITGA1 Missense_Mutation p.N1063S 0.30 tolerated(0.89) benign(0.001) TCGA-DD-AADS-01 5 54277844 54277844 G T ESM1 Missense_Mutation p.N144K 0.34 tolerated(0.3) benign(0.007) TCGA-DD-AADS-01 5 5462373 5462374 - CA KIAA0947 Frame_Shift_Ins p.V977Qfs*33 0.21 TCGA-DD-AADS-01 6 142764671 142764671 A G GPR126 3'UTR 0.14 TCGA-DD-AADS-01 6 147124576 147124576 G A ADGB Intron 0.39 TCGA-DD-AADS-01 6 150212108 150212108 T C RAET1E 5'UTR 0.34 TCGA-DD-AADS-01 6 157100005 157100005 C A ARID1B Silent p.G314G 0.10 TCGA-DD-AADS-01 6 33382581 33382581 C T PHF1 Missense_Mutation p.P342S 0.24 tolerated(0.16) benign(0) TCGA-DD-AADS-01 6 393256 393256 G A IRF4 Missense_Mutation p.G35D 0.31 deleterious(0) probably_damaging(0.926) TCGA-DD-AADS-01 6 47976781 47976781 G C PTCHD4 Missense_Mutation p.R166G 0.40 tolerated(0.39) benign(0.392) TCGA-DD-AADS-01 6 71603943 71603943 A T B3GAT2 Silent p.P208P 0.30 TCGA-DD-AADS-01 6 79679818 79679818 C G PHIP Missense_Mutation p.A1024P 0.30 deleterious(0) probably_damaging(0.996) TCGA-DD-AADS-01 7 107393915 107393915 A T CBLL1 Missense_Mutation p.N81Y 0.03 deleterious(0.02) benign(0.293) TCGA-DD-AADS-01 7 134225865 134225865 T C AKR1B10 3'UTR 0.11 TCGA-DD-AADS-01 7 140055481 140055481 T A SLC37A3 Missense_Mutation p.Q202L 0.18 tolerated(0.4) benign(0.005) TCGA-DD-AADS-01 7 156932031 156932031 A G UBE3C Missense_Mutation p.K22R 0.18 tolerated(0.38) benign(0.005) TCGA-DD-AADS-01 7 16720989 16720989 C A BZW2 Nonsense_Mutation p.S100* 0.28 TCGA-DD-AADS-01 7 31887658 31887658 A C PDE1C Missense_Mutation p.L362V 0.17 tolerated(1) benign(0.006) TCGA-DD-AADS-01 7 62752210 62752210 C A ZNF733P RNA 0.18 TCGA-DD-AADS-01 7 63726440 63726440 A T ZNF679 Missense_Mutation p.E143D 0.24 tolerated(0.12) benign(0.005) TCGA-DD-AADS-01 7 7412740 7412740 C G COL28A1 Missense_Mutation p.G933R 0.22 deleterious(0) probably_damaging(1) TCGA-DD-AADS-01 7 83610774 83610774 T C SEMA3A Silent p.S505S 0.04 TCGA-DD-AADS-01 7 86574266 86574266 A T KIAA1324L Nonsense_Mutation p.Y201* 0.27 TCGA-DD-AADS-01 7 8791265 8791265 T A NXPH1 Missense_Mutation p.S228T 0.05 tolerated(0.25) possibly_damaging(0.557) TCGA-DD-AADS-01 7 94259029 94259029 A G SGCE Splice_Site p.X78_splice 0.48 TCGA-DD-AADS-01 7 97770825 97770825 A T LMTK2 Silent p.P116P 0.17 TCGA-DD-AADS-01 8 12285148 12285148 G T FAM86B2 Intron 0.70 TCGA-DD-AADS-01 8 145001727 145001727 C T PLEC Missense_Mutation p.E1340K 0.34 unknown(0) TCGA-DD-AADS-01 8 24775019 24775019 G C NEFM Missense_Mutation p.G551R 0.33 deleterious(0.01) unknown(0) TCGA-DD-AADS-01 8 53055540 53055540 T A ST18 Silent p.P706P 0.35 TCGA-DD-AADS-01 8 74464277 74464277 C A STAU2 Silent p.L500L 0.08 TCGA-DD-AADS-01 9 126439003 126439003 C A DENND1A Missense_Mutation p.R123I 0.35 deleterious(0.02) benign(0.063) TCGA-DD-AADS-01 9 129596900 129596900 C T ZBTB43 3'UTR 0.36 TCGA-DD-AADS-01 9 135929323 135929323 A C GTF3C5 Missense_Mutation p.K328Q 0.36 tolerated(0.09) possibly_damaging(0.897) TCGA-DD-AADS-01 9 79002393 79002393 T A RFK Silent p.L130L 0.36 TCGA-DD-AADS-01 X 107381369 107381369 A T ATG4A Missense_Mutation p.L254F 0.27 deleterious(0) possibly_damaging(0.56) TCGA-DD-AADS-01 X 118222586 118222586 T A KIAA1210 Silent p.S869S 0.06 TCGA-DD-AADS-01 X 134023045 134023045 A C MOSPD1 3'UTR 0.70 TCGA-DD-AADS-01 X 138733894 138733894 T C MCF2 Missense_Mutation p.I4V 0.73 tolerated(0.37) probably_damaging(0.927) TCGA-DD-AADS-01 X 14937917 14937917 T G MOSPD2 Missense_Mutation p.L515V 0.06 tolerated(0.17) benign(0.005) TCGA-DD-AADS-01 X 53272572 53272572 T A IQSEC2 Missense_Mutation p.N944I 0.76 deleterious(0) benign(0.419) TCGA-DD-AADS-01 X 69255445 69255445 G T EDA Missense_Mutation p.A388S 0.60 deleterious_low_confidence(0.03) probably_damaging(0.985) TCGA-DD-AADU-01 10 104474063 104474063 C G ARL3 5'UTR 0.44 TCGA-DD-AADU-01 10 22031033 22031033 G A MLLT10 3'UTR 0.33 TCGA-DD-AADU-01 10 23481461 23481461 T A PTF1A Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0) possibly_damaging(0.599) TCGA-DD-AADU-01 10 31799687 31799687 A T ZEB1 Nonsense_Mutation p.K191* 0.36 TCGA-DD-AADU-01 10 50818690 50818690 C G SLC18A3 5'UTR 0.50 TCGA-DD-AADU-01 10 82036146 82036146 T C MAT1A Missense_Mutation p.I252V 0.32 tolerated(0.09) benign(0.007) TCGA-DD-AADU-01 11 103325984 103325984 C T DYNC2H1 Missense_Mutation p.P4183L 0.28 probably_damaging(0.996) TCGA-DD-AADU-01 11 124482989 124482989 G A PANX3 Missense_Mutation p.D99N 0.27 tolerated(0.34) benign(0) TCGA-DD-AADU-01 11 125770212 125770212 T G HYLS1 3'UTR 0.05 TCGA-DD-AADU-01 11 1270921 1270921 T A MUC5B Missense_Mutation p.S4271T 0.34 benign(0.008) TCGA-DD-AADU-01 11 18751293 18751293 C A PTPN5 Missense_Mutation p.A468S 0.23 deleterious(0) probably_damaging(0.999) TCGA-DD-AADU-01 11 26714081 26714081 G A SLC5A12 Missense_Mutation p.P370S 0.33 tolerated(0.12) probably_damaging(0.92) TCGA-DD-AADU-01 11 44193161 44193161 G C EXT2 Missense_Mutation p.A425P 0.53 tolerated(0.34) benign(0.419) TCGA-DD-AADU-01 11 5475217 5475217 C A OR51I2 Missense_Mutation p.P167T 0.57 deleterious(0.03) probably_damaging(1) TCGA-DD-AADU-01 11 55563595 55563595 T A OR5D14 Silent p.S188S 0.31 TCGA-DD-AADU-01 11 89537577 89537577 A T TRIM49 Missense_Mutation p.Y21N 0.19 deleterious(0.01) probably_damaging(0.954) TCGA-DD-AADU-01 12 123106426 123106426 A T KNTC1 Splice_Site p.X2094_splice 0.35 TCGA-DD-AADU-01 12 4479524 4479524 G C FGF23 Missense_Mutation p.F247L 0.22 tolerated_low_confidence(0.1) benign(0.004) TCGA-DD-AADU-01 12 4794433 4794433 C T NDUFA9 Missense_Mutation p.A302V 0.28 tolerated(0.08) benign(0.128) TCGA-DD-AADU-01 12 50497824 50497824 A G GPD1 5'UTR 0.38 TCGA-DD-AADU-01 13 35729962 35729962 C A NBEA Missense_Mutation p.P833T 0.37 deleterious(0) probably_damaging(0.999) TCGA-DD-AADU-01 13 35729963 35729963 C A NBEA Missense_Mutation p.P833Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-DD-AADU-01 13 37453684 37453684 T A SMAD9 Missense_Mutation p.K48M 0.39 deleterious(0) probably_damaging(0.994) TCGA-DD-AADU-01 13 48986793 48986793 T G LPAR6 5'UTR 0.04 TCGA-DD-AADU-01 14 106209392 106209392 G - IGHG1 Frame_Shift_Del p.P6Hfs*32 0.26 TCGA-DD-AADU-01 14 20404569 20404569 T G OR4K1 Missense_Mutation p.I248M 0.40 tolerated(0.09) possibly_damaging(0.721) TCGA-DD-AADU-01 14 21052215 21052215 A G RNASE11 Missense_Mutation p.V140A 0.30 tolerated(1) benign(0.023) TCGA-DD-AADU-01 14 23243206 23243206 G T SLC7A7 Silent p.P455P 0.70 TCGA-DD-AADU-01 14 76967237 76967237 A T ESRRB 3'UTR 0.44 TCGA-DD-AADU-01 15 23890781 23890781 C T MAGEL2 Silent p.A100A 0.28 TCGA-DD-AADU-01 15 28996727 28996727 G A WHAMMP2 RNA 0.55 TCGA-DD-AADU-01 15 35084456 35084456 T A ACTC1 Nonsense_Mutation p.K215* 0.56 TCGA-DD-AADU-01 15 43269020 43269020 C A UBR1 Missense_Mutation p.V1422F 0.26 deleterious(0.01) probably_damaging(0.972) TCGA-DD-AADU-01 15 45661556 45661556 A G GATM Missense_Mutation p.L151S 0.32 tolerated(0.7) benign(0.001) TCGA-DD-AADU-01 15 54308039 54308039 A T UNC13C Missense_Mutation p.Y980F 0.59 deleterious_low_confidence(0.03) benign(0.437) TCGA-DD-AADU-01 15 56388189 56388189 C T RFX7 Silent p.L579L 0.15 TCGA-DD-AADU-01 15 90016014 90016014 G - RHCG Frame_Shift_Del p.M465Wfs*39 0.17 TCGA-DD-AADU-01 16 30380742 30380742 C A TBC1D10B Missense_Mutation p.G255C 0.47 deleterious_low_confidence(0) possibly_damaging(0.839) TCGA-DD-AADU-01 16 69152319 69152344 CGGAAGCATGGTCCGTTCACCAACGC - HAS3 3'Flank 0.53 TCGA-DD-AADU-01 17 21117539 21117539 T G TMEM11 5'UTR 0.79 TCGA-DD-AADU-01 17 34415819 34415819 G A CCL3 3'UTR 0.56 TCGA-DD-AADU-01 17 37791909 37791909 C T PPP1R1B Silent p.R165R 0.54 TCGA-DD-AADU-01 17 39738663 39738663 A T KRT14 3'UTR 0.65 TCGA-DD-AADU-01 17 42992812 42992812 C T GFAP Missense_Mutation p.V15I 0.54 tolerated(0.43) benign(0.112) TCGA-DD-AADU-01 17 46700180 46700180 G T HOXB9 3'UTR 0.12 TCGA-DD-AADU-01 17 5041492 5041492 C T USP6 Silent p.N334N 0.17 TCGA-DD-AADU-01 17 62892812 62892812 A G LRRC37A3 Silent p.D188D 0.23 TCGA-DD-AADU-01 17 63014400 63014400 G A GNA13 Silent p.L178L 0.25 TCGA-DD-AADU-01 17 65174838 65174838 T C HELZ Missense_Mutation p.Y456C 0.27 deleterious(0) probably_damaging(0.998) TCGA-DD-AADU-01 17 65340883 65340883 G C PSMD12 Missense_Mutation p.L308V 0.24 tolerated(0.08) benign(0.392) TCGA-DD-AADU-01 17 7257214 7257214 C A KCTD11 3'UTR 0.34 TCGA-DD-AADU-01 17 80010078 80010078 G T GPS1 5'UTR 0.38 TCGA-DD-AADU-01 18 15325684 15325684 A T RNU6-721P 5'Flank 0.27 TCGA-DD-AADU-01 18 44184173 44184173 C G LOXHD1 Missense_Mutation p.G260A 0.55 tolerated(0.59) probably_damaging(0.959) TCGA-DD-AADU-01 18 48575189 48575189 T C SMAD4 Missense_Mutation p.V128A 0.43 deleterious(0) probably_damaging(0.983) TCGA-DD-AADU-01 18 52258515 52258515 T C DYNAP Missense_Mutation p.M27T 0.40 deleterious(0) benign(0.402) TCGA-DD-AADU-01 18 58039621 58039621 A G MC4R 5'UTR 0.36 TCGA-DD-AADU-01 18 627195 627195 T A CLUL1 Missense_Mutation p.D174E 0.44 deleterious(0.03) benign(0.341) TCGA-DD-AADU-01 18 76757080 76757080 A T SALL3 Missense_Mutation p.N1221Y 0.06 deleterious(0) probably_damaging(0.999) TCGA-DD-AADU-01 19 111029 111029 A T OR4F17 Silent p.I117I 0.60 TCGA-DD-AADU-01 19 17416638 17416638 A - MRPL34 5'UTR 0.25 TCGA-DD-AADU-01 19 20003048 20003048 A G ZNF253 Missense_Mutation p.K331R 0.52 tolerated(0.08) probably_damaging(0.932) TCGA-DD-AADU-01 19 36003608 36003608 G T DMKN Missense_Mutation p.P171T 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-DD-AADU-01 19 36348363 36348363 G A KIRREL2 Missense_Mutation p.G60R 0.39 deleterious(0) probably_damaging(0.999) TCGA-DD-AADU-01 19 3985424 3985436 GAGTCGCGCCGAG - EEF2 5'UTR 0.36 TCGA-DD-AADU-01 19 46973527 46973527 G T PNMAL1 Missense_Mutation p.P256T 0.31 tolerated(0.37) possibly_damaging(0.803) TCGA-DD-AADU-01 19 53652039 53652039 T C ZNF347 Missense_Mutation p.I57V 0.35 tolerated(0.49) benign(0.003) TCGA-DD-AADU-01 19 55147659 55147659 T C AC009892.10 Intron 0.43 TCGA-DD-AADU-01 19 9086539 9086539 T A MUC16 Missense_Mutation p.D1759V 0.33 unknown(0) TCGA-DD-AADU-01 1 152277558 152277558 T A FLG Silent p.A3268A 0.41 TCGA-DD-AADU-01 1 155851401 155851401 A T SYT11 3'UTR 0.80 TCGA-DD-AADU-01 1 160249278 160249278 A C PEX19 3'UTR 0.23 TCGA-DD-AADU-01 1 162302830 162302830 C A NOS1AP Missense_Mutation p.S123Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-DD-AADU-01 1 179497542 179497542 T A AXDND1 Missense_Mutation p.F897L 0.19 tolerated(0.26) possibly_damaging(0.483) TCGA-DD-AADU-01 1 190195446 190195446 G T BRINP3 Missense_Mutation p.L243I 0.70 deleterious(0.02) probably_damaging(0.991) TCGA-DD-AADU-01 1 192127859 192127859 A G RGS18 Missense_Mutation p.E31G 0.22 deleterious(0) probably_damaging(0.962) TCGA-DD-AADU-01 1 21011489 21011489 C A KIF17 Missense_Mutation p.A682S 0.34 tolerated_low_confidence(0.17) benign(0.011) TCGA-DD-AADU-01 1 31479854 31479854 G T PUM1 Silent p.A176A 0.06 TCGA-DD-AADU-01 1 62923216 62923216 A C DOCK7 Missense_Mutation p.C2094G 0.36 tolerated_low_confidence(0.29) benign(0) TCGA-DD-AADU-01 20 30556420 30556420 T C XKR7 Missense_Mutation p.F148L 0.19 tolerated(0.67) benign(0.007) TCGA-DD-AADU-01 21 30698823 30698823 A G BACH1 Silent p.K226K 0.34 TCGA-DD-AADU-01 21 34540851 34540851 T A C21orf54 Missense_Mutation p.K68M 0.38 possibly_damaging(0.895) TCGA-DD-AADU-01 21 43829552 43829552 C A UBASH3A Missense_Mutation p.D63E 0.11 deleterious(0) probably_damaging(0.999) TCGA-DD-AADU-01 21 47412121 47412121 C T COL6A1 Missense_Mutation p.A409V 0.34 tolerated(0.26) unknown(0) TCGA-DD-AADU-01 22 32754272 32754272 C A RFPL3 Missense_Mutation p.H72N 0.35 tolerated(0.67) benign(0.001) TCGA-DD-AADU-01 2 130832582 130832582 C A POTEF Missense_Mutation p.Q821H 0.57 deleterious_low_confidence(0) benign(0.339) TCGA-DD-AADU-01 2 1437364 1437364 T C TPO Missense_Mutation p.S112P 0.29 tolerated(0.08) benign(0.03) TCGA-DD-AADU-01 2 148674942 148674942 C T ACVR2A Nonsense_Mutation p.R255* 0.28 TCGA-DD-AADU-01 2 1844609 1844609 T A MYT1L Silent p.S925S 0.28 TCGA-DD-AADU-01 2 20527092 20527092 T C PUM2 Silent p.L10L 0.39 TCGA-DD-AADU-01 2 216177020 216177020 G A ATIC Intron 0.44 TCGA-DD-AADU-01 2 220408106 220408106 G C CHPF Missense_Mutation p.P52R 0.24 tolerated(0.56) benign(0.024) TCGA-DD-AADU-01 2 242688333 242688333 C T D2HGDH Intron 0.28 TCGA-DD-AADU-01 2 25656837 25656837 T A DTNB Missense_Mutation p.N429Y 0.36 tolerated(0.13) benign(0.004) TCGA-DD-AADU-01 2 40656383 40656383 T C SLC8A1 Missense_Mutation p.I346M 0.55 tolerated(0.1) benign(0.016) TCGA-DD-AADU-01 2 70314990 70314990 A C PCBP1 Missense_Mutation p.I39L 0.25 tolerated(0.09) benign(0.006) TCGA-DD-AADU-01 2 79255484 79255484 A T REG3G 3'UTR 0.33 TCGA-DD-AADU-01 2 87018067 87018067 C A CD8A 5'UTR 0.57 TCGA-DD-AADU-01 2 97361484 97361484 G T FER1L5 RNA 0.59 TCGA-DD-AADU-01 3 10392219 10392219 C A ATP2B2 Missense_Mutation p.V727F 0.59 deleterious(0) possibly_damaging(0.87) TCGA-DD-AADU-01 3 111993747 111993747 A T SLC9C1 Missense_Mutation p.L204I 0.32 tolerated(0.33) benign(0.092) TCGA-DD-AADU-01 3 127788431 127788431 A G SEC61A1 Missense_Mutation p.I453V 0.59 tolerated(0.08) benign(0.203) TCGA-DD-AADU-01 3 129150366 129150366 T A MBD4 Missense_Mutation p.H574L 0.10 deleterious(0.01) possibly_damaging(0.64) TCGA-DD-AADU-01 3 132389819 132389819 T G UBA5 Missense_Mutation p.L169V 0.50 tolerated(0.19) benign(0.024) TCGA-DD-AADU-01 3 41266124 41266124 A G CTNNB1 Missense_Mutation p.T41A 0.58 deleterious(0) possibly_damaging(0.844) TCGA-DD-AADU-01 3 49161489 49161489 G A LAMB2 Missense_Mutation p.R1157C 0.23 deleterious(0) probably_damaging(0.982) TCGA-DD-AADU-01 3 49711824 49711824 G T APEH 5'UTR 0.74 TCGA-DD-AADU-01 3 8988966 8988966 T A RAD18 Silent p.T68T 0.23 TCGA-DD-AADU-01 4 100201407 100201407 T C ADH1A Silent p.A286A 0.26 TCGA-DD-AADU-01 4 152682142 152682142 C A PET112 5'UTR 0.16 TCGA-DD-AADU-01 4 155411056 155411056 G A DCHS2 Silent p.G484G 0.43 TCGA-DD-AADU-01 4 169138031 169138031 A C DDX60 3'UTR 0.41 TCGA-DD-AADU-01 4 177056301 177056301 G A WDR17 Missense_Mutation p.D405N 0.37 tolerated(0.83) benign(0.05) TCGA-DD-AADU-01 4 188924482 188924482 A T ZFP42 Missense_Mutation p.K174M 0.49 tolerated(0.46) benign(0.07) TCGA-DD-AADU-01 4 20729052 20729052 A G PACRGL 3'UTR 0.47 TCGA-DD-AADU-01 4 72649749 72649749 A T GC Missense_Mutation p.L15H 0.35 tolerated_low_confidence(0.22) benign(0.431) TCGA-DD-AADU-01 4 74275109 74275109 T C ALB Missense_Mutation p.Y174H 0.35 deleterious(0.05) possibly_damaging(0.759) TCGA-DD-AADU-01 4 88533640 88533640 A T DSPP Missense_Mutation p.N101I 0.37 probably_damaging(0.972) TCGA-DD-AADU-01 5 137275835 137275835 A - PKD2L2 Frame_Shift_Del p.%3D 0.25 TCGA-DD-AADU-01 5 139213348 139213348 G A PSD2 Missense_Mutation p.G444D 0.27 deleterious(0.01) probably_damaging(0.976) TCGA-DD-AADU-01 5 80604841 80604841 A G ZCCHC9 Silent p.K204K 0.57 TCGA-DD-AADU-01 5 94800208 94800208 A - TTC37 3'UTR 0.35 TCGA-DD-AADU-01 6 105606625 105606625 A T POPDC3 Missense_Mutation p.V199E 0.08 deleterious(0) probably_damaging(1) TCGA-DD-AADU-01 6 114181991 114181991 A T MARCKS 3'UTR 0.20 TCGA-DD-AADU-01 6 143818299 143818299 A G FUCA2 Intron 0.25 TCGA-DD-AADU-01 6 158924282 158924282 A G TULP4 Missense_Mutation p.N1196S 0.46 tolerated_low_confidence(1) benign(0) TCGA-DD-AADU-01 6 31783298 31783298 C T HSPA1A 5'UTR 0.44 TCGA-DD-AADU-01 6 56966810 56966810 A C ZNF451 Intron 0.33 TCGA-DD-AADU-01 7 135080633 135080633 T A CNOT4 Silent p.I294I 0.35 TCGA-DD-AADU-01 7 139719869 139719869 T C TBXAS1 Silent p.N571N 0.49 TCGA-DD-AADU-01 7 150027750 150027750 A C ZBED6CL Missense_Mutation p.E86A 0.34 deleterious(0) probably_damaging(0.922) TCGA-DD-AADU-01 7 50455094 50455094 G T IKZF1 Intron 0.40 TCGA-DD-AADU-01 7 62752277 62752277 T C ZNF733P RNA 0.34 TCGA-DD-AADU-01 7 82584094 82584094 G C PCLO Missense_Mutation p.L2059V 0.36 unknown(0) TCGA-DD-AADU-01 7 83037763 83037763 G C SEMA3E Missense_Mutation p.S197R 0.35 deleterious(0) benign(0.068) TCGA-DD-AADU-01 8 118159055 118159055 T A SLC30A8 Intron 0.51 TCGA-DD-AADU-01 8 144663449 144663449 A G EEF1D Missense_Mutation p.L446P 0.52 deleterious(0) probably_damaging(0.984) TCGA-DD-AADU-01 8 146067920 146067920 A C ZNF7 Missense_Mutation p.K476N 0.28 deleterious(0) probably_damaging(1) TCGA-DD-AADU-01 8 59851985 59851985 A T TOX Missense_Mutation p.L96Q 0.35 deleterious(0) probably_damaging(0.986) TCGA-DD-AADU-01 8 95835559 95835559 C G INTS8 5'UTR 0.49 TCGA-DD-AADU-01 9 123239658 123239658 T C CDK5RAP2 Missense_Mutation p.H566R 0.33 tolerated(0.14) benign(0.001) TCGA-DD-AADU-01 9 135930549 135930549 A T GTF3C5 Intron 0.23 TCGA-DD-AADU-01 9 137804942 137804942 C A FCN1 Missense_Mutation p.G130C 0.26 deleterious(0) probably_damaging(1) TCGA-DD-AADU-01 9 34650496 34650496 C T GALT 3'UTR 0.32 TCGA-DD-AADU-01 9 79321163 79321163 T C PRUNE2 Silent p.T2009T 0.36 TCGA-DD-AADU-01 X 106359256 106359256 G A RBM41 Missense_Mutation p.P52S 0.83 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AADU-01 X 119005199 119005199 T C RNF113A Silent p.K126K 0.77 TCGA-DD-AADU-01 X 152801801 152801801 G T ATP2B3 Silent p.A32A 0.81 TCGA-DD-AADU-01 X 23018432 23018432 C T DDX53 Silent p.N86N 0.80 TCGA-DD-AADU-01 X 69509251 69509251 G C PDZD11 Intron 0.77 TCGA-DD-AADV-01 10 105215375 105215375 T A CALHM1 Nonsense_Mutation p.K229* 0.38 TCGA-DD-AADV-01 10 134599068 134599068 C A NKX6-2 Missense_Mutation p.D129Y 0.17 deleterious(0.05) possibly_damaging(0.885) TCGA-DD-AADV-01 10 17147481 17147481 T A CUBN Missense_Mutation p.H402L 0.17 deleterious(0) benign(0.428) TCGA-DD-AADV-01 10 75558879 75558879 T C ZSWIM8 Silent p.T1432T 0.40 TCGA-DD-AADV-01 10 75558885 75558885 T G ZSWIM8 Silent p.G1434G 0.36 TCGA-DD-AADV-01 10 79581096 79581096 C A DLG5 Missense_Mutation p.S1049I 0.14 tolerated(0.09) benign(0.001) TCGA-DD-AADV-01 10 95177 95177 A C TUBB8 Translation_Start_Site p.M1? 0.40 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-DD-AADV-01 11 102661252 102661252 C T MMP1 Missense_Mutation p.G434E 0.42 deleterious(0.03) possibly_damaging(0.491) TCGA-DD-AADV-01 11 116633446 116633446 T C BUD13 Missense_Mutation p.S287G 0.42 tolerated(0.23) benign(0.008) TCGA-DD-AADV-01 11 117988719 117988719 C G TMPRSS4 3'UTR 0.41 TCGA-DD-AADV-01 11 1270660 1270660 C T MUC5B Silent p.L4184L 0.06 TCGA-DD-AADV-01 11 128332286 128332286 C G ETS1 Missense_Mutation p.M476I 0.47 tolerated(0.21) possibly_damaging(0.663) TCGA-DD-AADV-01 11 22646708 22646708 G A FANCF Missense_Mutation p.R217W 0.29 deleterious(0.03) probably_damaging(0.916) TCGA-DD-AADV-01 11 22647195 22647195 A - FANCF Frame_Shift_Del p.R55Afs*26 0.20 TCGA-DD-AADV-01 11 35232954 35232954 A G CD44 Missense_Mutation p.T590A 0.25 deleterious(0) benign(0.026) TCGA-DD-AADV-01 11 40137179 40137179 C A LRRC4C Missense_Mutation p.D222Y 0.42 deleterious(0) possibly_damaging(0.82) TCGA-DD-AADV-01 11 4621727 4621727 T C TRIM68 Missense_Mutation p.I413V 0.04 tolerated(0.62) benign(0.007) TCGA-DD-AADV-01 11 61205156 61205156 A C SDHAF2 Missense_Mutation p.R32S 0.49 tolerated(0.41) benign(0.002) TCGA-DD-AADV-01 11 82877098 82877098 C A PCF11 Missense_Mutation p.Q387K 0.05 tolerated(0.93) benign(0.064) TCGA-DD-AADV-01 12 248488 248488 G T IQSEC3 Silent p.R653R 0.41 TCGA-DD-AADV-01 12 39726081 39726081 T C KIF21A Missense_Mutation p.I996V 0.07 deleterious(0.05) probably_damaging(0.954) TCGA-DD-AADV-01 12 46320992 46320992 T G SCAF11 Missense_Mutation p.Q831P 0.06 tolerated(0.14) benign(0.003) TCGA-DD-AADV-01 12 66522717 66522717 T C LLPH Missense_Mutation p.H57R 0.29 tolerated(0.54) benign(0.009) TCGA-DD-AADV-01 12 72004331 72004331 T C ZFC3H1 Silent p.E1949E 0.22 TCGA-DD-AADV-01 14 23532224 23532224 T C ACIN1 Missense_Mutation p.I991V 0.33 benign(0.056) TCGA-DD-AADV-01 14 44974177 44974177 G T FSCB Missense_Mutation p.P672T 0.20 tolerated(0.27) unknown(0) TCGA-DD-AADV-01 14 52735006 52735006 C T PTGDR Silent p.A158A 0.06 TCGA-DD-AADV-01 14 61446462 61446462 C T TRMT5 Missense_Mutation p.G52S 0.20 tolerated_low_confidence(0.86) benign(0.003) TCGA-DD-AADV-01 15 100185917 100185917 A G MEF2A Missense_Mutation p.Y69C 0.42 deleterious(0) possibly_damaging(0.634) TCGA-DD-AADV-01 15 23812391 23812391 T C MKRN3 Missense_Mutation p.S488P 0.05 deleterious(0.03) possibly_damaging(0.758) TCGA-DD-AADV-01 15 48414317 48414317 G A SLC24A5 Intron 0.29 TCGA-DD-AADV-01 15 49031451 49031451 A G CEP152 Silent p.V1376V 0.40 TCGA-DD-AADV-01 15 90320448 90320448 C T MESP2 Missense_Mutation p.P287L 0.04 deleterious(0.04) benign(0.421) TCGA-DD-AADV-01 15 91500027 91500027 G C RCCD1 Silent p.L21L 0.05 TCGA-DD-AADV-01 16 15125629 15125629 A T PDXDC1 Silent p.V479V 0.10 TCGA-DD-AADV-01 16 2009700 2009700 C T NDUFB10 Silent p.V25V 0.04 TCGA-DD-AADV-01 16 23713784 23713784 T C ERN2 Silent p.R384R 0.13 TCGA-DD-AADV-01 16 30484108 30484108 G C ITGAL 5'UTR 0.41 TCGA-DD-AADV-01 16 58701176 58701176 C T SLC38A7 3'UTR 0.52 TCGA-DD-AADV-01 16 69996947 69996947 G A CLEC18A Missense_Mutation p.R427Q 0.06 deleterious_low_confidence(0.03) possibly_damaging(0.899) TCGA-DD-AADV-01 16 712038 712038 G T WDR90 Nonsense_Mutation p.E1338* 0.36 TCGA-DD-AADV-01 16 72170637 72170637 C T PMFBP1 Missense_Mutation p.V334M 0.29 tolerated(1) benign(0.003) TCGA-DD-AADV-01 16 74443471 74443471 C T CLEC18B Missense_Mutation p.R436Q 0.09 deleterious_low_confidence(0.02) possibly_damaging(0.899) TCGA-DD-AADV-01 16 88505819 88505819 A T ZNF469 3'UTR 0.47 TCGA-DD-AADV-01 17 16735648 16735648 C T KRT16P2 RNA 0.53 TCGA-DD-AADV-01 17 29654655 29654655 A G NF1 Missense_Mutation p.I1803V 0.52 tolerated(0.05) benign(0.018) TCGA-DD-AADV-01 17 42275081 42275081 T C ATXN7L3 Missense_Mutation p.I23M 0.38 deleterious(0) possibly_damaging(0.817) TCGA-DD-AADV-01 17 45682765 45682765 A C NPEPPS Missense_Mutation p.N648H 0.45 deleterious(0) probably_damaging(0.992) TCGA-DD-AADV-01 17 47797246 47797246 G C FAM117A Missense_Mutation p.P195R 0.58 tolerated(0.07) probably_damaging(0.971) TCGA-DD-AADV-01 17 48746768 48746768 A G ABCC3 Missense_Mutation p.E707G 0.05 deleterious(0.02) possibly_damaging(0.683) TCGA-DD-AADV-01 17 72285824 72285824 T A DNAI2 Missense_Mutation p.F187I 0.41 deleterious(0) possibly_damaging(0.861) TCGA-DD-AADV-01 17 7579369 7579369 G C TP53 Missense_Mutation p.S106R 0.73 tolerated(0.41) benign(0.27) TCGA-DD-AADV-01 19 14208652 14208652 T C PRKACA Missense_Mutation p.Y157C 0.26 deleterious(0) probably_damaging(1) TCGA-DD-AADV-01 19 17837405 17837405 C T MAP1S Silent p.G404G 0.22 TCGA-DD-AADV-01 19 22952081 22952081 C A ZNF99 Nonsense_Mutation p.E17* 0.37 TCGA-DD-AADV-01 19 36317386 36317386 A T NPHS1 3'UTR 0.08 TCGA-DD-AADV-01 19 39805143 39805143 G A LRFN1 Silent p.P278P 0.48 TCGA-DD-AADV-01 19 50958529 50958529 A G MYBPC2 Missense_Mutation p.N727D 0.32 tolerated(0.22) benign(0.199) TCGA-DD-AADV-01 19 56028598 56028598 G T SSC5D Silent p.P985P 0.35 TCGA-DD-AADV-01 19 651657 651657 T A RNF126 Missense_Mutation p.T133S 0.45 tolerated(0.81) benign(0.003) TCGA-DD-AADV-01 19 9057497 9057497 G A MUC16 Silent p.T9983T 0.41 TCGA-DD-AADV-01 1 116948612 116948612 G A ATP1A1 3'Flank 0.50 TCGA-DD-AADV-01 1 11844517 11844517 G T C1orf167 Missense_Mutation p.A1122S 0.24 deleterious(0.01) possibly_damaging(0.567) TCGA-DD-AADV-01 1 12640426 12640426 G A DHRS3 Intron 0.40 TCGA-DD-AADV-01 1 1455986 1455986 G C ATAD3A Missense_Mutation p.V295L 0.03 tolerated(0.28) benign(0.042) TCGA-DD-AADV-01 1 156814633 156814633 C T INSRR Missense_Mutation p.E814K 0.50 tolerated(1) benign(0.093) TCGA-DD-AADV-01 1 160721146 160721146 G C SLAMF7 Missense_Mutation p.E261Q 0.04 tolerated(0.09) benign(0.303) TCGA-DD-AADV-01 1 16577701 16577701 G C FBXO42 Missense_Mutation p.P540A 0.51 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-DD-AADV-01 1 175130284 175130284 T C KIAA0040 Splice_Site 0.10 TCGA-DD-AADV-01 1 17743015 17743015 G A RCC2 Silent p.N329N 0.26 TCGA-DD-AADV-01 1 203743135 203743135 A G LAX1 Missense_Mutation p.N175D 0.34 deleterious(0.03) benign(0.418) TCGA-DD-AADV-01 1 21036196 21036196 C G KIF17 Silent p.L202L 0.05 TCGA-DD-AADV-01 1 22054891 22054891 A G USP48 Intron 0.21 TCGA-DD-AADV-01 1 26449068 26449068 A G PDIK1L Nonstop_Mutation p.*342Wext*24 0.28 TCGA-DD-AADV-01 1 45808300 45808300 A G TOE1 Missense_Mutation p.Y246C 0.48 deleterious(0) probably_damaging(0.999) TCGA-DD-AADV-01 1 52863529 52863529 T A ORC1 Missense_Mutation p.D77V 0.45 tolerated(0.11) benign(0.158) TCGA-DD-AADV-01 1 55250439 55250439 G A TTC22 Intron 0.40 TCGA-DD-AADV-01 1 65278505 65278505 A G RAVER2 Missense_Mutation p.S576G 0.46 deleterious(0) probably_damaging(0.999) TCGA-DD-AADV-01 1 65332551 65332551 T A JAK1 Missense_Mutation p.N330Y 0.41 deleterious(0.04) benign(0.169) TCGA-DD-AADV-01 1 75112352 75112352 T G C1orf173 Missense_Mutation p.E81A 0.44 deleterious(0) probably_damaging(0.999) TCGA-DD-AADV-01 1 76345739 76345739 C T MSH4 Missense_Mutation p.S561F 0.26 deleterious(0.03) benign(0.043) TCGA-DD-AADV-01 1 85624884 85624884 T A SYDE2 Missense_Mutation p.Q1045L 0.46 tolerated(0.06) benign(0.206) TCGA-DD-AADV-01 1 86904629 86904629 T A CLCA2 Missense_Mutation p.F348Y 0.05 tolerated(0.19) benign(0.015) TCGA-DD-AADV-01 20 21329027 21329027 A T XRN2 Missense_Mutation p.N608Y 0.28 deleterious(0.01) probably_damaging(0.921) TCGA-DD-AADV-01 20 4764824 4764824 C A RASSF2 3'UTR 0.15 TCGA-DD-AADV-01 20 48809092 48809092 T C CEBPB 3'UTR 0.39 TCGA-DD-AADV-01 22 21045206 21045206 G T POM121L4P RNA 0.18 TCGA-DD-AADV-01 22 43898542 43898542 C T MPPED1 Missense_Mutation p.P256L 0.39 tolerated(0.73) benign(0.212) TCGA-DD-AADV-01 2 113404985 113404985 T G SLC20A1 Missense_Mutation p.F140C 0.36 deleterious(0) probably_damaging(1) TCGA-DD-AADV-01 2 122485594 122485594 T G NIFK Intron 0.14 TCGA-DD-AADV-01 2 168096409 168096409 G T XIRP2 Missense_Mutation p.Q301H 0.06 benign(0.042) TCGA-DD-AADV-01 2 190636618 190636618 C T ORMDL1 Missense_Mutation p.A113T 0.47 tolerated(1) benign(0.014) TCGA-DD-AADV-01 2 198266800 198266800 G A SF3B1 Missense_Mutation p.A711V 0.45 deleterious(0) probably_damaging(0.973) TCGA-DD-AADV-01 2 198358073 198358073 C G HSPD1 Missense_Mutation p.A282P 0.28 deleterious(0.02) probably_damaging(1) TCGA-DD-AADV-01 2 218924401 218924401 C T CXCR2P1 RNA 0.46 TCGA-DD-AADV-01 2 219613650 219613650 A G TTLL4 Missense_Mutation p.I865V 0.49 deleterious(0.02) benign(0.257) TCGA-DD-AADV-01 2 231280938 231280938 C T SP100 5'Flank 0.39 TCGA-DD-AADV-01 2 26667692 26667692 C T DRC1 Silent p.H424H 0.22 TCGA-DD-AADV-01 2 37475513 37475513 T C NDUFAF7 3'UTR 0.37 TCGA-DD-AADV-01 2 48915497 48915497 A G LHCGR Missense_Mutation p.L480S 0.43 deleterious(0) possibly_damaging(0.733) TCGA-DD-AADV-01 2 8871742 8871742 G C KIDINS220 Missense_Mutation p.P1475R 0.05 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-DD-AADV-01 3 100086936 100086936 T C TOMM70A Missense_Mutation p.N542S 0.28 tolerated(0.28) benign(0.09) TCGA-DD-AADV-01 3 10074603 10074603 T G FANCD2 Missense_Mutation p.L51R 0.06 deleterious(0) probably_damaging(0.952) TCGA-DD-AADV-01 3 119263535 119263535 C T CD80 Missense_Mutation p.D94N 0.05 tolerated(0.05) possibly_damaging(0.844) TCGA-DD-AADV-01 3 160148414 160148414 C G SMC4 Silent p.V941V 0.38 TCGA-DD-AADV-01 3 52553292 52553292 C T STAB1 Missense_Mutation p.L1683F 0.08 deleterious(0.01) possibly_damaging(0.853) TCGA-DD-AADV-01 4 159629790 159629790 A G ETFDH 3'UTR 0.62 TCGA-DD-AADV-01 4 167658664 167658664 A G SPOCK3 Silent p.Y365Y 0.41 TCGA-DD-AADV-01 4 4248013 4248014 - A TMEM128 Frame_Shift_Ins p.S28Ffs*16 0.26 TCGA-DD-AADV-01 4 70804905 70804905 C A CSN1S1 Silent p.S85S 0.23 TCGA-DD-AADV-01 4 76805789 76805789 T C PPEF2 Missense_Mutation p.H235R 0.54 deleterious(0.04) benign(0.083) TCGA-DD-AADV-01 5 102343198 102343198 T A PAM Silent p.T684T 0.04 TCGA-DD-AADV-01 5 132209378 132209378 C T LEAP2 5'UTR 0.27 TCGA-DD-AADV-01 5 137221803 137221803 A G MYOT Missense_Mutation p.D364G 0.41 tolerated(0.11) possibly_damaging(0.751) TCGA-DD-AADV-01 5 140221993 140221993 G C PCDHA8 Missense_Mutation p.A363P 0.23 deleterious_low_confidence(0) possibly_damaging(0.807) TCGA-DD-AADV-01 5 141385881 141385881 T C GNPDA1 Silent p.R79R 0.49 TCGA-DD-AADV-01 5 149245755 149245755 A G PDE6A Missense_Mutation p.F779S 0.24 tolerated(0.12) probably_damaging(0.995) TCGA-DD-AADV-01 5 161112958 161112958 C G GABRA6 5'UTR 0.05 TCGA-DD-AADV-01 5 50090751 50090751 G A PARP8 Missense_Mutation p.G310R 0.05 tolerated_low_confidence(0.44) benign(0.017) TCGA-DD-AADV-01 5 56226567 56226567 T C MIER3 Silent p.L251L 0.50 TCGA-DD-AADV-01 5 66391445 66391445 C G MAST4 Missense_Mutation p.S285W 0.28 probably_damaging(1) TCGA-DD-AADV-01 5 76129080 76129080 C T F2RL1 Silent p.I216I 0.40 TCGA-DD-AADV-01 5 78322281 78322281 C T DMGDH Missense_Mutation p.R719H 0.04 deleterious(0) probably_damaging(0.995) TCGA-DD-AADV-01 5 80513281 80513281 A - RASGRF2 Frame_Shift_Del p.M1182* 0.22 TCGA-DD-AADV-01 5 90670042 90670042 C T ARRDC3 Missense_Mutation p.V308I 0.30 deleterious(0) probably_damaging(0.976) TCGA-DD-AADV-01 6 117241485 117241485 G A RFX6 Missense_Mutation p.A399T 0.53 deleterious(0.04) probably_damaging(0.954) TCGA-DD-AADV-01 6 170104471 170104471 A G C6orf120 3'UTR 0.41 TCGA-DD-AADV-01 6 27100855 27100855 C G HIST1H2AG Missense_Mutation p.S2C 0.66 deleterious_low_confidence(0.02) benign(0.184) TCGA-DD-AADV-01 6 32724046 32724046 G C HLA-DQB2 3'UTR 0.33 TCGA-DD-AADV-01 6 54219431 54219431 C T TINAG Missense_Mutation p.T416I 0.51 tolerated(0.69) benign(0.033) TCGA-DD-AADV-01 6 7583810 7583810 A G DSP Silent p.V2105V 0.06 TCGA-DD-AADV-01 6 84269885 84269885 C T SNAP91 Missense_Mutation p.V857I 0.55 tolerated(0.16) possibly_damaging(0.621) TCGA-DD-AADV-01 7 100239197 100239197 G T TFR2 5'UTR 0.48 TCGA-DD-AADV-01 7 146536812 146536812 G A CNTNAP2 Missense_Mutation p.G73E 0.52 deleterious(0) probably_damaging(1) TCGA-DD-AADV-01 7 158109583 158109583 A T PTPRN2 Missense_Mutation p.F69I 0.16 tolerated(0.61) benign(0.001) TCGA-DD-AADV-01 7 4153005 4153005 C G SDK1 Silent p.P1173P 0.25 TCGA-DD-AADV-01 7 54610277 54610277 A G VSTM2A 5'UTR 0.23 TCGA-DD-AADV-01 7 5923521 5923521 G T OCM Missense_Mutation p.K65N 0.42 deleterious(0.02) possibly_damaging(0.887) TCGA-DD-AADV-01 7 7278123 7278123 A G C1GALT1 Missense_Mutation p.Y153C 0.43 deleterious(0.01) possibly_damaging(0.707) TCGA-DD-AADV-01 7 80546114 80546114 G A SEMA3C 5'UTR 0.40 TCGA-DD-AADV-01 7 94897973 94897973 A G PPP1R9A Missense_Mutation p.Y926C 0.37 tolerated(0.16) benign(0.25) TCGA-DD-AADV-01 7 99695366 99695366 C G MCM7 Missense_Mutation p.E330Q 0.57 tolerated(0.35) benign(0.403) TCGA-DD-AADV-01 7 99755553 99755553 C A C7orf43 Silent p.V140V 0.49 TCGA-DD-AADV-01 8 131833593 131833593 G A ADCY8 Nonsense_Mutation p.Q917* 0.49 TCGA-DD-AADV-01 8 27472176 27472176 C T CLU 5'UTR 0.55 TCGA-DD-AADV-01 8 39564320 39564320 T C ADAM18 Silent p.N638N 0.27 TCGA-DD-AADV-01 8 95654284 95654284 C A ESRP1 Missense_Mutation p.A78E 0.06 deleterious(0.02) possibly_damaging(0.491) TCGA-DD-AADV-01 9 21481921 21481921 G A IFNE 5'UTR 0.61 TCGA-DD-AADV-01 9 38016074 38016074 T G SHB Missense_Mutation p.S258R 0.11 tolerated(0.46) benign(0.01) TCGA-DD-AADV-01 X 100880299 100880299 C T ARMCX3 Silent p.S110S 0.51 TCGA-DD-AADV-01 X 105452120 105452120 A C MUM1L1 3'UTR 0.09 TCGA-DD-AADV-01 X 138839997 138839997 C G ATP11C Missense_Mutation p.L893F 0.05 tolerated(0.18) probably_damaging(0.999) TCGA-DD-AADV-01 X 1720179 1720179 G C AKAP17A Missense_Mutation p.G594R 0.35 tolerated_low_confidence(0.95) unknown(0) TCGA-DD-AADV-01 X 216095 216095 C G PLCXD1 3'UTR 0.39 TCGA-DD-AADV-01 X 47479089 47479089 A G SYN1 Silent p.F13F 0.11 TCGA-DD-AADV-01 X 90692659 90692659 T G PABPC5 3'UTR 0.11 TCGA-DD-AADV-01 Y 15029320 15029320 G C DDX3Y Missense_Mutation p.R590T 0.59 deleterious(0.03) benign(0.244) TCGA-DD-AADW-01 10 117075120 117075120 C T ATRNL1 Missense_Mutation p.H971Y 0.46 tolerated(1) benign(0.003) TCGA-DD-AADW-01 10 124895890 124895890 C T HMX3 Silent p.H108H 0.42 TCGA-DD-AADW-01 10 81850809 81850809 T C TMEM254 3'UTR 0.21 TCGA-DD-AADW-01 10 86010196 86010196 G C RGR Intron 0.08 TCGA-DD-AADW-01 11 123886338 123886338 A T OR10G4 Silent p.P19P 0.08 TCGA-DD-AADW-01 11 45832352 45832352 G C SLC35C1 Missense_Mutation p.Q187H 0.09 deleterious(0) probably_damaging(0.94) TCGA-DD-AADW-01 11 55579749 55579749 T C OR5L1 Silent p.D269D 0.11 TCGA-DD-AADW-01 11 65789252 65789252 A G CATSPER1 Missense_Mutation p.F510L 0.09 tolerated(0.33) possibly_damaging(0.447) TCGA-DD-AADW-01 11 74547698 74547698 A G RNF169 Missense_Mutation p.R684G 0.06 tolerated(0.08) probably_damaging(0.996) TCGA-DD-AADW-01 12 52710776 52710776 T A KRT83 Missense_Mutation p.D261V 0.37 deleterious(0) possibly_damaging(0.903) TCGA-DD-AADW-01 12 56817448 56817448 C T TIMELESS Silent p.E670E 0.06 TCGA-DD-AADW-01 12 58131312 58131312 C T AGAP2 Missense_Mutation p.A240T 0.06 tolerated_low_confidence(0.21) benign(0) TCGA-DD-AADW-01 12 65672604 65672604 T C MSRB3 Missense_Mutation p.L19P 0.08 deleterious(0) possibly_damaging(0.902) TCGA-DD-AADW-01 12 91365776 91365776 T C EPYC Missense_Mutation p.D168G 0.07 tolerated(0.06) benign(0.263) TCGA-DD-AADW-01 13 31724104 31724104 C A HSPH1 Missense_Mutation p.G375V 0.81 deleterious(0) probably_damaging(1) TCGA-DD-AADW-01 13 77842001 77842001 C A MYCBP2 Missense_Mutation p.E406D 0.38 benign(0.002) TCGA-DD-AADW-01 17 29159374 29159374 G A ATAD5 Silent p.G3G 0.30 TCGA-DD-AADW-01 17 61895280 61895280 C T DDX42 Missense_Mutation p.P780L 0.04 deleterious_low_confidence(0.01) benign(0.023) TCGA-DD-AADW-01 17 62856309 62856309 G T LRRC37A3 Missense_Mutation p.P1319T 0.26 tolerated(0.13) benign(0.047) TCGA-DD-AADW-01 17 68174806 68174806 G T KCNJ2 3'UTR 0.04 TCGA-DD-AADW-01 17 7578402 7578402 G C TP53 Missense_Mutation p.C176W 0.10 deleterious(0) probably_damaging(0.999) TCGA-DD-AADW-01 17 78389335 78389335 C T ENDOV Intron 0.30 TCGA-DD-AADW-01 17 80275365 80275365 C G CD7 Missense_Mutation p.G3R 0.06 tolerated_low_confidence(0.63) unknown(0) TCGA-DD-AADW-01 18 21644129 21644129 G A TTC39C Missense_Mutation p.G65R 0.52 deleterious(0) probably_damaging(1) TCGA-DD-AADW-01 18 54426112 54426112 A G WDR7 Missense_Mutation p.T926A 0.15 tolerated(0.09) benign(0.167) TCGA-DD-AADW-01 18 65180609 65180609 G T DSEL Missense_Mutation p.P423T 0.05 tolerated(0.74) benign(0.227) TCGA-DD-AADW-01 19 1470234 1470234 A C APC2 3'UTR 0.59 TCGA-DD-AADW-01 19 38160324 38160324 C A ZNF781 Silent p.L242L 0.57 TCGA-DD-AADW-01 19 38798281 38798281 G T YIF1B Silent p.L217L 0.05 TCGA-DD-AADW-01 19 47951333 47951333 C T SLC8A2 Missense_Mutation p.G499D 0.38 tolerated(0.39) benign(0.035) TCGA-DD-AADW-01 1 152733003 152733003 C T KPRP Silent p.P313P 0.20 TCGA-DD-AADW-01 1 154310110 154310110 G T ATP8B2 Intron 0.21 TCGA-DD-AADW-01 1 17586227 17586227 C G PADI3 Missense_Mutation p.P83A 0.10 tolerated(1) benign(0.247) TCGA-DD-AADW-01 1 205495307 205495307 G A CDK18 Missense_Mutation p.V221M 0.07 deleterious(0) probably_damaging(0.99) TCGA-DD-AADW-01 1 212558750 212558750 C T TMEM206 Missense_Mutation p.G182S 0.09 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-DD-AADW-01 1 248263787 248263787 A T OR2L13 3'UTR 0.35 TCGA-DD-AADW-01 1 36563771 36563771 C T COL8A2 Missense_Mutation p.G504E 0.41 deleterious(0) unknown(0) TCGA-DD-AADW-01 1 71873213 71873213 A T NEGR1 Missense_Mutation p.D327E 0.10 tolerated(1) benign(0) TCGA-DD-AADW-01 20 17640636 17640636 C A RRBP1 Missense_Mutation p.A173S 0.36 tolerated(0.26) benign(0.039) TCGA-DD-AADW-01 20 57570587 57570587 C A CTSZ 3'UTR 0.18 TCGA-DD-AADW-01 21 34443666 34443666 G C OLIG1 3'UTR 0.11 TCGA-DD-AADW-01 21 47987630 47987630 C T DIP2A 3'UTR 0.47 TCGA-DD-AADW-01 2 131672890 131672890 C A ARHGEF4 5'Flank 0.05 TCGA-DD-AADW-01 2 149240972 149240972 C G MBD5 Missense_Mutation p.L938V 0.31 tolerated(0.16) unknown(0) TCGA-DD-AADW-01 2 168100507 168100507 G C XIRP2 Missense_Mutation p.G869R 0.03 probably_damaging(1) TCGA-DD-AADW-01 2 224847395 224847398 TACT - SERPINE2 Splice_Site p.X341_splice 0.15 TCGA-DD-AADW-01 3 194392959 194392959 C A LSG1 5'UTR 0.79 TCGA-DD-AADW-01 3 33420320 33420320 C A FBXL2 Intron 0.10 TCGA-DD-AADW-01 4 114278698 114278698 G T ANK2 Missense_Mutation p.S2975I 0.50 benign(0.361) TCGA-DD-AADW-01 4 155506805 155506805 T C FGA Silent p.G592G 0.66 TCGA-DD-AADW-01 4 1980735 1980735 G A WHSC1 3'UTR 0.49 TCGA-DD-AADW-01 4 39780035 39780035 A G UBE2K Missense_Mutation p.E195G 0.42 deleterious(0) possibly_damaging(0.667) TCGA-DD-AADW-01 5 141974792 141974792 G C FGF1 3'UTR 0.35 TCGA-DD-AADW-01 5 169309963 169309963 G T FAM196B Missense_Mutation p.Q314K 0.43 tolerated(0.3) benign(0.013) TCGA-DD-AADW-01 5 38523562 38523562 T C LIFR Missense_Mutation p.I174V 0.44 deleterious(0.03) benign(0.015) TCGA-DD-AADW-01 5 64967741 64967741 C T SGTB Splice_Site p.X268_splice 0.54 TCGA-DD-AADW-01 6 109764480 109764480 G T SMPD2 Missense_Mutation p.G247V 0.14 tolerated(0.06) benign(0.3) TCGA-DD-AADW-01 6 158922879 158922890 GACAGCTGTAGG - TULP4 In_Frame_Del p.V731_A734del 0.32 TCGA-DD-AADW-01 6 26021005 26021005 G C HIST1H3A Silent p.A96A 0.34 TCGA-DD-AADW-01 6 31079471 31079471 C T C6orf15 Missense_Mutation p.G222D 0.11 deleterious(0.03) probably_damaging(0.982) TCGA-DD-AADW-01 6 35088734 35088734 T C TCP11 Missense_Mutation p.I236V 0.41 tolerated(0.87) benign(0.252) TCGA-DD-AADW-01 7 36461497 36461497 C T ANLN Missense_Mutation p.T732I 0.11 deleterious(0) possibly_damaging(0.85) TCGA-DD-AADW-01 7 38289007 38289007 T C TRGC2 Silent p.G56G 0.30 TCGA-DD-AADW-01 7 73008624 73008624 G C MLXIPL Missense_Mutation p.S807C 0.32 deleterious(0) probably_damaging(0.98) TCGA-DD-AADW-01 7 99693609 99693609 G T MCM7 Silent p.V461V 0.09 TCGA-DD-AADW-01 8 100832349 100832349 A T VPS13B Missense_Mutation p.Q3023L 0.07 deleterious(0) benign(0.069) TCGA-DD-AADW-01 8 68179424 68179424 C G ARFGEF1 Missense_Mutation p.D572H 0.10 tolerated(0.08) probably_damaging(0.997) TCGA-DD-AADW-01 8 77617394 77617394 T G ZFHX4 Missense_Mutation p.D357E 0.46 possibly_damaging(0.621) TCGA-DD-AADW-01 8 77763751 77763752 - AA ZFHX4 Frame_Shift_Ins p.F1534Nfs*37 0.10 TCGA-DD-AADW-01 9 21409229 21409229 A T IFNA8 Silent p.S18S 0.39 TCGA-DD-AADW-01 9 39887361 39887361 G A SPATA31A2 Silent p.Q116Q 0.12 TCGA-DD-AADW-01 9 79009045 79009045 C T RFK Missense_Mutation p.G15S 0.39 deleterious(0) probably_damaging(0.99) TCGA-DD-AADW-01 X 109697300 109697300 T C RGAG1 Missense_Mutation p.L1152S 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DD-AADW-01 X 53603872 53603872 C T HUWE1 Missense_Mutation p.A1958T 0.84 possibly_damaging(0.621) TCGA-DD-AADY-01 10 121677401 121677401 A T SEC23IP Missense_Mutation p.N533I 0.75 deleterious(0) probably_damaging(0.925) TCGA-DD-AADY-01 10 128153427 128153427 C T C10orf90 Missense_Mutation p.D458N 0.74 tolerated(1) benign(0.03) TCGA-DD-AADY-01 10 62637748 62637748 C A RHOBTB1 Missense_Mutation p.L548F 0.83 tolerated(0.93) probably_damaging(0.987) TCGA-DD-AADY-01 10 93699785 93699785 A T BTAF1 Missense_Mutation p.N72I 0.86 deleterious(0) possibly_damaging(0.861) TCGA-DD-AADY-01 11 111622945 111622945 C G PPP2R1B Missense_Mutation p.D426H 0.80 deleterious(0) probably_damaging(0.989) TCGA-DD-AADY-01 11 1269606 1269606 C A MUC5B Missense_Mutation p.H3832Q 0.04 unknown(0) TCGA-DD-AADY-01 11 47506044 47506044 C A CELF1 Missense_Mutation p.M140I 0.43 deleterious(0) benign(0) TCGA-DD-AADY-01 11 62343081 62343081 C T TUT1 Missense_Mutation p.A742T 0.24 tolerated(0.14) benign(0.031) TCGA-DD-AADY-01 11 6643315 6643315 G A DCHS1 Missense_Mutation p.R3198C 0.56 deleterious(0) probably_damaging(0.985) TCGA-DD-AADY-01 12 111471987 111471987 C T CUX2 Silent p.A2A 0.86 TCGA-DD-AADY-01 12 21353510 21353510 T G SLCO1B1 Missense_Mutation p.L347V 0.45 tolerated(0.08) benign(0.344) TCGA-DD-AADY-01 12 48373812 48373812 G A COL2A1 Nonsense_Mutation p.R887* 0.46 TCGA-DD-AADY-01 12 4920655 4920655 G C KCNA6 Missense_Mutation p.G483A 0.43 tolerated_low_confidence(0.43) benign(0.01) TCGA-DD-AADY-01 13 51939714 51939714 C G INTS6 3'UTR 0.71 TCGA-DD-AADY-01 14 64686099 64686099 G T SYNE2 Nonsense_Mutation p.E6611* 0.45 TCGA-DD-AADY-01 15 50535066 50535066 G A HDC Silent p.I460I 0.08 TCGA-DD-AADY-01 15 62207992 62207992 C T VPS13C Missense_Mutation p.S2762N 0.07 tolerated(0.1) benign(0.003) TCGA-DD-AADY-01 15 64067763 64067763 C A HERC1 Missense_Mutation p.W20C 0.46 probably_damaging(0.999) TCGA-DD-AADY-01 17 10447311 10447311 T G MYH2 Missense_Mutation p.T186P 0.81 deleterious(0.01) benign(0.116) TCGA-DD-AADY-01 17 16029456 16029457 - T NCOR1 Frame_Shift_Ins p.T525Nfs*11 0.43 TCGA-DD-AADY-01 17 16042476 16042476 G A NCOR1 Missense_Mutation p.L400F 0.76 probably_damaging(0.998) TCGA-DD-AADY-01 17 17700212 17700212 A G RAI1 Missense_Mutation p.K1317R 0.82 deleterious(0) probably_damaging(0.997) TCGA-DD-AADY-01 17 53121196 53121196 T - STXBP4 Intron 0.54 TCGA-DD-AADY-01 18 44229147 44229147 C T LOXHD1 Silent p.G72G 0.55 TCGA-DD-AADY-01 19 19105023 19105023 A C SUGP2 3'UTR 0.50 TCGA-DD-AADY-01 19 41255748 41255748 G A C19orf54 5'UTR 0.48 TCGA-DD-AADY-01 19 49464086 49464086 C T BAX Missense_Mutation p.P130L 0.54 tolerated(0.55) possibly_damaging(0.698) TCGA-DD-AADY-01 19 52090771 52090771 G T ZNF175 Missense_Mutation p.C396F 0.48 deleterious(0.01) probably_damaging(0.998) TCGA-DD-AADY-01 1 180023062 180023063 - A CEP350 Frame_Shift_Ins p.H1726Tfs*9 0.21 TCGA-DD-AADY-01 1 182499495 182499495 T G RGSL1 Missense_Mutation p.W748G 0.23 deleterious(0) probably_damaging(0.998) TCGA-DD-AADY-01 1 206775799 206775799 C A EIF2D Missense_Mutation p.D265Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-DD-AADY-01 1 209799342 209799342 C A LAMB3 Missense_Mutation p.G543C 0.24 deleterious(0.02) probably_damaging(0.981) TCGA-DD-AADY-01 1 231044767 231044767 C T TTC13 Splice_Site p.X770_splice 0.07 TCGA-DD-AADY-01 1 39879410 39879410 C T KIAA0754 Missense_Mutation p.S1022F 0.17 possibly_damaging(0.683) TCGA-DD-AADY-01 1 53352671 53352671 C T ZYG11A Missense_Mutation p.P684S 0.40 tolerated(0.16) possibly_damaging(0.596) TCGA-DD-AADY-01 1 63836604 63836604 G T ALG6 5'UTR 0.07 TCGA-DD-AADY-01 1 6500469 6500469 A G ESPN Missense_Mutation p.Q215R 0.14 tolerated(0.07) benign(0.015) TCGA-DD-AADY-01 20 30803116 30803116 G A POFUT1 Silent p.Q97Q 0.34 TCGA-DD-AADY-01 21 38098520 38098520 A G SIM2 Missense_Mutation p.Q215R 0.73 deleterious(0.01) benign(0.053) TCGA-DD-AADY-01 21 42770888 42770888 G A MX2 Missense_Mutation p.R405Q 0.08 tolerated(1) benign(0.127) TCGA-DD-AADY-01 22 20796263 20796263 G C KLHL22 3'UTR 0.31 TCGA-DD-AADY-01 22 29709746 29709746 C T RASL10A Intron 0.22 TCGA-DD-AADY-01 2 109088333 109088333 A T GCC2 Missense_Mutation p.I850L 0.44 tolerated(0.1) benign(0.002) TCGA-DD-AADY-01 2 162480851 162480851 A T SLC4A10 5'Flank 0.35 TCGA-DD-AADY-01 2 1647159 1647159 C T PXDN Silent p.V1311V 0.31 TCGA-DD-AADY-01 2 179426149 179426149 A G TTN Missense_Mutation p.I28237T 0.28 TCGA-DD-AADY-01 2 201337678 201337678 A G SPATS2L Missense_Mutation p.N395S 0.39 tolerated(0.76) benign(0) TCGA-DD-AADY-01 2 207172127 207172127 G A ZDBF2 Missense_Mutation p.D959N 0.40 tolerated(0.31) possibly_damaging(0.857) TCGA-DD-AADY-01 2 64779985 64779985 C G AFTPH Silent p.A459A 0.38 TCGA-DD-AADY-01 2 88828588 88828588 C T TEX37 Nonsense_Mutation p.Q47* 0.49 TCGA-DD-AADY-01 3 127398864 127398864 G A ABTB1 Missense_Mutation p.A356T 0.11 deleterious(0) probably_damaging(0.995) TCGA-DD-AADY-01 3 172166062 172166062 C T GHSR Missense_Mutation p.A48T 0.03 tolerated(0.2) benign(0.011) TCGA-DD-AADY-01 3 186501377 186501377 G A EIF4A2 5'UTR 0.42 TCGA-DD-AADY-01 3 195512929 195512929 A T MUC4 Missense_Mutation p.L1841H 0.15 benign(0.33) TCGA-DD-AADY-01 3 195513665 195513665 C G MUC4 Missense_Mutation p.G1596R 0.17 probably_damaging(0.991) TCGA-DD-AADY-01 3 52668670 52668671 - T PBRM1 Frame_Shift_Ins p.Y417Ifs*3 0.41 TCGA-DD-AADY-01 4 41986480 41986480 C A DCAF4L1 3'UTR 0.53 TCGA-DD-AADY-01 5 140389296 140389296 C T PCDHAC1 Missense_Mutation p.P889L 0.46 deleterious(0.03) benign(0.052) TCGA-DD-AADY-01 7 100279816 100279816 T C GIGYF1 Missense_Mutation p.Y935C 0.57 deleterious(0) probably_damaging(0.998) TCGA-DD-AADY-01 7 6661653 6661653 G A ZNF853 Missense_Mutation p.R344Q 0.46 tolerated_low_confidence(0.08) unknown(0) TCGA-DD-AADY-01 8 145003368 145003368 C G PLEC Missense_Mutation p.E1192Q 0.27 unknown(0) TCGA-DD-AADY-01 8 27094373 27094373 G T STMN4 Missense_Mutation p.A214D 0.40 tolerated(0.25) probably_damaging(0.981) TCGA-DD-AADY-01 9 131378105 131378121 GGAGTCCTGGATCAAGT - SPTAN1 Splice_Site p.X1781_splice 0.28 TCGA-DD-AADY-01 X 128975989 128975989 C T ZDHHC9 5'UTR 0.39 TCGA-DD-AADY-01 X 152482351 152482351 C G MAGEA1 Silent p.V220V 0.43 TCGA-DD-AADY-01 X 152825344 152825344 A T ATP2B3 Missense_Mutation p.N928I 0.11 deleterious(0) probably_damaging(0.978) TCGA-DD-AADY-01 X 153714302 153714302 C T UBL4A Silent p.S57S 0.54 TCGA-DD-AADY-01 X 27766594 27766594 T C DCAF8L2 Silent p.L528L 0.45 TCGA-DD-AADY-01 X 6069247 6069247 C G NLGN4X Silent p.R87R 0.41 TCGA-DD-AADY-01 X 69672371 69672371 G A DLG3 Intron 0.41 TCGA-DD-AADY-01 X 82764589 82764589 C A POU3F4 3'UTR 0.56 TCGA-DD-AAE0-01 10 72633292 72633292 G A SGPL1 Missense_Mutation p.G415D 0.21 deleterious(0.01) probably_damaging(0.986) TCGA-DD-AAE0-01 10 97442541 97442541 C T TCTN3 Missense_Mutation p.S440N 0.49 deleterious(0.04) benign(0.062) TCGA-DD-AAE0-01 11 123847876 123847876 A C OR10S1 Missense_Mutation p.S175A 0.23 tolerated(0.41) benign(0.11) TCGA-DD-AAE0-01 11 133816010 133816010 G C IGSF9B Missense_Mutation p.P70A 0.45 deleterious(0.02) probably_damaging(0.998) TCGA-DD-AAE0-01 11 56409796 56409796 G T OR5AP2 Silent p.I40I 0.42 TCGA-DD-AAE0-01 11 65147644 65147644 C T SLC25A45 Missense_Mutation p.A14T 0.50 deleterious(0.05) possibly_damaging(0.908) TCGA-DD-AAE0-01 11 77728170 77728170 G A KCTD14 Silent p.I79I 0.04 TCGA-DD-AAE0-01 12 100564749 100564749 T C RP11-175P13.3 3'Flank 0.63 TCGA-DD-AAE0-01 12 15702138 15702138 G A PTPRO Silent p.T805T 0.06 TCGA-DD-AAE0-01 12 45567136 45567136 G A PLEKHA8P1 RNA 0.55 TCGA-DD-AAE0-01 13 111767867 111767867 C A ARHGEF7 5'UTR 0.21 TCGA-DD-AAE0-01 13 25073508 25073508 A G PARP4 Silent p.G136G 0.39 TCGA-DD-AAE0-01 13 29012442 29012442 G A FLT1 Silent p.P143P 0.40 TCGA-DD-AAE0-01 13 95104904 95104904 G A DCT Missense_Mutation p.R398C 0.55 tolerated_low_confidence(0.06) benign(0.008) TCGA-DD-AAE0-01 14 21541244 21541244 C T ARHGEF40 Missense_Mutation p.A15V 0.19 deleterious(0) probably_damaging(0.97) TCGA-DD-AAE0-01 14 23868079 23868079 G A MYH6 Silent p.Y583Y 0.08 TCGA-DD-AAE0-01 15 102506394 102506394 C T MIR1302-11 5'Flank 0.15 TCGA-DD-AAE0-01 15 28421672 28421672 G A HERC2 Silent p.P3196P 0.22 TCGA-DD-AAE0-01 15 34659274 34659274 C G LPCAT4 Missense_Mutation p.A10P 0.08 tolerated_low_confidence(0.2) benign(0) TCGA-DD-AAE0-01 15 50549685 50549685 C T HDC Missense_Mutation p.M126I 0.61 deleterious(0.02) possibly_damaging(0.86) TCGA-DD-AAE0-01 16 3139523 3139523 C A ZSCAN10 Nonsense_Mutation p.E583* 0.34 TCGA-DD-AAE0-01 16 31422687 31422687 G A ITGAD Missense_Mutation p.R519H 0.26 tolerated(0.07) benign(0.12) TCGA-DD-AAE0-01 16 3713465 3713465 C T TRAP1 Silent p.V556V 0.49 TCGA-DD-AAE0-01 16 72198723 72198723 T C PMFBP1 Silent p.R35R 0.76 TCGA-DD-AAE0-01 16 88871218 88871218 G C CDT1 Missense_Mutation p.G134R 0.75 tolerated(0.11) possibly_damaging(0.894) TCGA-DD-AAE0-01 17 39726179 39726179 A T KRT9 Missense_Mutation p.S272T 0.53 tolerated(0.55) benign(0.285) TCGA-DD-AAE0-01 17 43480082 43480082 C T ARHGAP27 Missense_Mutation p.E240K 0.32 deleterious(0) probably_damaging(1) TCGA-DD-AAE0-01 17 59668029 59668029 G A NACA2 Silent p.V171V 0.12 TCGA-DD-AAE0-01 17 62850585 62850585 G A LRRC37A3 3'UTR 0.25 TCGA-DD-AAE0-01 17 7577524 7577524 T C TP53 Missense_Mutation p.T253A 0.63 tolerated(0.12) probably_damaging(0.999) TCGA-DD-AAE0-01 18 12427045 12427045 A G SLMO1 Silent p.T99T 0.48 TCGA-DD-AAE0-01 18 22804905 22804905 A T ZNF521 Missense_Mutation p.C993S 0.38 deleterious(0) probably_damaging(0.996) TCGA-DD-AAE0-01 18 48575093 48575093 C - SMAD4 Frame_Shift_Del p.R97Vfs*13 0.13 TCGA-DD-AAE0-01 18 48591919 48591919 G A SMAD4 Missense_Mutation p.R361H 0.36 deleterious(0.03) probably_damaging(1) TCGA-DD-AAE0-01 18 66504069 66504069 T A CCDC102B Silent p.I23I 0.12 TCGA-DD-AAE0-01 19 14501784 14501784 C T CD97 Missense_Mutation p.S80L 0.18 deleterious(0) benign(0.362) TCGA-DD-AAE0-01 19 35540393 35540393 A T HPN Missense_Mutation p.R45W 0.18 deleterious(0.02) benign(0.267) TCGA-DD-AAE0-01 19 36431682 36431682 C G LRFN3 Missense_Mutation p.P452R 0.39 deleterious(0.03) possibly_damaging(0.667) TCGA-DD-AAE0-01 19 407984 407984 A G C2CD4C Silent p.T126T 0.45 TCGA-DD-AAE0-01 19 41599545 41599545 A G CYP2A13 Missense_Mutation p.N281S 0.20 deleterious(0.02) benign(0.242) TCGA-DD-AAE0-01 19 42485722 42485722 C T ATP1A3 Missense_Mutation p.V470M 0.42 deleterious(0.01) possibly_damaging(0.905) TCGA-DD-AAE0-01 19 46663963 46663963 G A IGFL2 Missense_Mutation p.A67T 0.26 tolerated(1) benign(0.023) TCGA-DD-AAE0-01 19 47290989 47290989 C T SLC1A5 Silent p.A78A 0.06 TCGA-DD-AAE0-01 19 56041657 56041657 C T SBK2 Missense_Mutation p.A164T 0.25 tolerated(0.11) benign(0.116) TCGA-DD-AAE0-01 1 116574049 116574049 C T SLC22A15 Missense_Mutation p.A264V 0.30 tolerated(1) benign(0.016) TCGA-DD-AAE0-01 1 156521882 156521882 A G IQGAP3 Missense_Mutation p.F485S 0.13 tolerated(0.29) probably_damaging(0.954) TCGA-DD-AAE0-01 1 167830128 167830128 T C ADCY10 Missense_Mutation p.N597S 0.18 deleterious(0) probably_damaging(0.936) TCGA-DD-AAE0-01 1 204589034 204589034 G A LRRN2 Silent p.C29C 0.17 TCGA-DD-AAE0-01 1 21183930 21183930 A G EIF4G3 Missense_Mutation p.V1052A 0.30 tolerated(0.32) possibly_damaging(0.625) TCGA-DD-AAE0-01 1 27877569 27877569 G A AHDC1 Missense_Mutation p.P353L 0.22 tolerated_low_confidence(0.07) possibly_damaging(0.851) TCGA-DD-AAE0-01 1 45974925 45974925 G C MMACHC 3'UTR 0.33 TCGA-DD-AAE0-01 1 54871734 54871734 T C SSBP3 5'UTR 0.38 TCGA-DD-AAE0-01 1 54871735 54871735 A G SSBP3 5'UTR 0.33 TCGA-DD-AAE0-01 1 79095456 79095456 C A IFI44L Missense_Mutation p.D193E 0.42 tolerated(0.07) benign(0.324) TCGA-DD-AAE0-01 20 40050514 40050514 G A CHD6 Silent p.G1587G 0.13 TCGA-DD-AAE0-01 20 57769145 57769145 G A ZNF831 Missense_Mutation p.G1024E 0.15 tolerated(1) benign(0.444) TCGA-DD-AAE0-01 20 60878837 60878837 C A ADRM1 Missense_Mutation p.D71E 0.12 deleterious(0) possibly_damaging(0.853) TCGA-DD-AAE0-01 22 18769733 18769733 C T GGT3P RNA 0.17 TCGA-DD-AAE0-01 22 37524403 37524403 G T IL2RB Silent p.V463V 0.12 TCGA-DD-AAE0-01 22 41547912 41547912 C G EP300 Missense_Mutation p.Q965E 0.19 possibly_damaging(0.766) TCGA-DD-AAE0-01 2 101009596 101009596 G C CHST10 3'UTR 0.31 TCGA-DD-AAE0-01 2 141200109 141200109 G A LRP1B Missense_Mutation p.P3460S 0.18 possibly_damaging(0.876) TCGA-DD-AAE0-01 2 149806841 149806841 C T KIF5C Missense_Mutation p.P278L 0.09 deleterious(0) probably_damaging(1) TCGA-DD-AAE0-01 2 17942784 17942784 G A GEN1 Missense_Mutation p.G95R 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-DD-AAE0-01 2 26652600 26652600 G A DRC1 Missense_Mutation p.M215I 0.27 tolerated(0.15) benign(0.005) TCGA-DD-AAE0-01 2 26695505 26695505 C T OTOF Missense_Mutation p.R1249Q 0.23 tolerated(0.73) benign(0) TCGA-DD-AAE0-01 2 27435079 27435079 C G ATRAID Missense_Mutation p.T3S 0.08 deleterious_low_confidence(0) benign(0.003) TCGA-DD-AAE0-01 2 3523232 3523232 G A ADI1 Silent p.D9D 0.25 TCGA-DD-AAE0-01 2 98914471 98914471 G A VWA3B Missense_Mutation p.A1087T 0.09 deleterious(0.03) possibly_damaging(0.84) TCGA-DD-AAE0-01 3 124951547 124951547 G A ZNF148 Missense_Mutation p.H675Y 0.54 deleterious(0.01) possibly_damaging(0.7) TCGA-DD-AAE0-01 3 127414028 127414028 G A MGLL Silent p.D202D 0.21 TCGA-DD-AAE0-01 3 151107778 151107778 G T MED12L Missense_Mutation p.Q1786H 0.10 tolerated(0.19) benign(0.125) TCGA-DD-AAE0-01 3 183667774 183667774 C A ABCC5 Silent p.L1028L 0.22 TCGA-DD-AAE0-01 4 169602487 169602487 C T PALLD Silent p.A364A 0.41 TCGA-DD-AAE0-01 4 20533635 20533635 T C SLIT2 Silent p.L548L 0.33 TCGA-DD-AAE0-01 5 131893023 131893023 C G RAD50 Missense_Mutation p.R3G 0.28 deleterious(0.03) benign(0.049) TCGA-DD-AAE0-01 5 140711458 140711458 C T PCDHGA1 Missense_Mutation p.R403C 0.22 deleterious_low_confidence(0.02) benign(0.159) TCGA-DD-AAE0-01 5 149504387 149504387 G A PDGFRB Silent p.T605T 0.50 TCGA-DD-AAE0-01 5 33937055 33937055 G A RXFP3 Silent p.G70G 0.06 TCGA-DD-AAE0-01 6 100061211 100061211 G A PRDM13 Missense_Mutation p.A234T 0.16 deleterious_low_confidence(0.04) benign(0.002) TCGA-DD-AAE0-01 6 110085143 110085143 G A FIG4 Nonsense_Mutation p.W464* 0.40 TCGA-DD-AAE0-01 6 128134119 128134119 C T THEMIS Missense_Mutation p.R556H 0.20 deleterious(0) possibly_damaging(0.897) TCGA-DD-AAE0-01 6 128135074 128135074 G A THEMIS Nonsense_Mutation p.R238* 0.30 TCGA-DD-AAE0-01 6 31600194 31600194 T G PRRC2A Silent p.A1248A 0.24 TCGA-DD-AAE0-01 7 100086313 100086313 C - NYAP1 Frame_Shift_Del p.P325Rfs*106 0.17 TCGA-DD-AAE0-01 7 115624534 115624534 G A TFEC 5'UTR 0.27 TCGA-DD-AAE0-01 7 117832218 117832218 A C NAA38 3'UTR 0.21 TCGA-DD-AAE0-01 7 117832220 117832220 C T NAA38 3'UTR 0.22 TCGA-DD-AAE0-01 7 127979340 127979340 T C RBM28 Missense_Mutation p.K105E 0.20 deleterious(0) benign(0.411) TCGA-DD-AAE0-01 7 20689688 20689688 T A ABCB5 Missense_Mutation p.V417D 0.21 deleterious(0) possibly_damaging(0.642) TCGA-DD-AAE0-01 7 44070385 44070385 C A RASA4CP RNA 0.51 TCGA-DD-AAE0-01 7 6509351 6509351 T C KDELR2 Missense_Mutation p.Y76C 0.08 deleterious(0.01) probably_damaging(0.943) TCGA-DD-AAE0-01 8 143961168 143961168 G A CYP11B1 Missense_Mutation p.A21V 0.22 tolerated(0.21) benign(0.014) TCGA-DD-AAE0-01 8 40012673 40012673 T - C8orf4 3'UTR 0.14 TCGA-DD-AAE0-01 8 57906212 57906212 C A IMPAD1 5'UTR 0.03 TCGA-DD-AAE0-01 9 126795032 126795032 T G LHX2 3'UTR 0.21 TCGA-DD-AAE0-01 X 105970508 105970508 G A RNF128 Missense_Mutation p.R122H 0.27 deleterious(0) probably_damaging(0.997) TCGA-DD-AAE0-01 X 123205074 123205074 C T STAG2 Missense_Mutation p.P812S 0.15 tolerated(0.34) benign(0.013) TCGA-DD-AAE0-01 X 146280593 146280593 A G MIR513B RNA 0.37 TCGA-DD-AAE0-01 X 147919196 147919196 C T AFF2 Missense_Mutation p.P371L 0.27 deleterious(0) benign(0.095) TCGA-DD-AAE0-01 X 155009668 155009668 C T SPRY3 3'UTR 0.32 TCGA-DD-AAE0-01 X 34149816 34149816 T C FAM47A Missense_Mutation p.T194A 0.34 tolerated(0.34) probably_damaging(0.953) TCGA-DD-AAE0-01 X 41307091 41307091 T A NYX 5'UTR 0.33 TCGA-DD-AAE0-01 X 73960698 73960698 T A KIAA2022 Missense_Mutation p.I1232F 0.04 tolerated(0.1) benign(0.126) TCGA-DD-AAE0-01 X 86887268 86887268 C T KLHL4 Silent p.T461T 0.14 TCGA-DD-AAE1-01 10 50950948 50950948 C A OGDHL Missense_Mutation p.M646I 0.36 deleterious(0.03) benign(0.008) TCGA-DD-AAE1-01 11 123600489 123600489 C T ZNF202 Silent p.T149T 0.17 TCGA-DD-AAE1-01 11 125769758 125769758 A G HYLS1 Silent p.Q165Q 0.44 TCGA-DD-AAE1-01 11 31312362 31312362 C T DCDC1 Missense_Mutation p.M264I 0.42 tolerated(0.06) benign(0.234) TCGA-DD-AAE1-01 11 61017209 61017209 C G PGA5 Missense_Mutation p.S281C 0.38 deleterious(0) probably_damaging(0.997) TCGA-DD-AAE1-01 11 9522758 9522758 G A ZNF143 Missense_Mutation p.G363E 0.50 tolerated(0.07) possibly_damaging(0.745) TCGA-DD-AAE1-01 12 109614034 109614034 A T ACACB Missense_Mutation p.E468V 0.36 tolerated(0.06) benign(0.351) TCGA-DD-AAE1-01 12 9227372 9227384 AGAGTTGTCTTAA - A2M Splice_Site p.X1178_splice 0.39 TCGA-DD-AAE1-01 13 100861682 100861682 G T PCCA Missense_Mutation p.V189F 0.40 deleterious(0) probably_damaging(0.997) TCGA-DD-AAE1-01 13 42535158 42535158 G - VWA8 5'UTR 0.11 TCGA-DD-AAE1-01 14 20852626 20852626 T C TEP1 Missense_Mutation p.Y1088C 0.39 deleterious(0.02) benign(0.059) TCGA-DD-AAE1-01 14 21561409 21561409 G A ZNF219 Missense_Mutation p.S16L 0.53 deleterious_low_confidence(0) benign(0.058) TCGA-DD-AAE1-01 14 32562464 32562464 G A ARHGAP5 Missense_Mutation p.M863I 0.43 tolerated(0.12) benign(0.074) TCGA-DD-AAE1-01 14 89202828 89202828 A G EML5 Missense_Mutation p.V310A 0.43 tolerated(0.13) benign(0.335) TCGA-DD-AAE1-01 15 34021159 34021159 A G RYR3 Missense_Mutation p.T2379A 0.16 benign(0.011) TCGA-DD-AAE1-01 15 79750565 79750565 A G KIAA1024 Silent p.E692E 0.25 TCGA-DD-AAE1-01 16 396740 396740 G A AXIN1 Nonsense_Mutation p.Q96* 0.73 TCGA-DD-AAE1-01 17 39777023 39777023 G A KRT17 Missense_Mutation p.R357C 0.41 deleterious(0) benign(0.114) TCGA-DD-AAE1-01 17 45367587 45367591 GTTCT - ITGB3 Frame_Shift_Del p.L359Hfs*12 0.44 TCGA-DD-AAE1-01 17 71390374 71390374 G T SDK2 Missense_Mutation p.R1228S 0.40 deleterious(0.02) possibly_damaging(0.844) TCGA-DD-AAE1-01 17 79257223 79257223 G A SLC38A10 Silent p.L115L 0.20 TCGA-DD-AAE1-01 18 58039334 58039334 G T MC4R Silent p.I83I 0.08 TCGA-DD-AAE1-01 18 70209069 70209069 G A CBLN2 Silent p.S109S 0.29 TCGA-DD-AAE1-01 18 74817196 74817196 G A MBP Nonsense_Mutation p.R8* 0.37 TCGA-DD-AAE1-01 19 15538111 15538111 T C WIZ Missense_Mutation p.K255E 0.44 tolerated(0.07) probably_damaging(0.997) TCGA-DD-AAE1-01 19 22574280 22574280 G T ZNF98 3'UTR 0.33 TCGA-DD-AAE1-01 19 30054814 30054814 G C VSTM2B Missense_Mutation p.K277N 0.32 deleterious(0.01) benign(0.184) TCGA-DD-AAE1-01 19 36351887 36351887 G A KIRREL2 Nonsense_Mutation p.W335* 0.52 TCGA-DD-AAE1-01 19 49143044 49143044 C T CA11 Splice_Site p.X189_splice 0.41 TCGA-DD-AAE1-01 19 55604010 55604010 A G PPP1R12C Silent p.A644A 0.46 TCGA-DD-AAE1-01 19 58639289 58639289 G T ZNF329 Silent p.R528R 0.34 TCGA-DD-AAE1-01 1 161989734 161989734 C T OLFML2B Missense_Mutation p.R138Q 0.65 tolerated(0.23) benign(0.136) TCGA-DD-AAE1-01 1 196881942 196881942 A T CFHR4 Missense_Mutation p.N356I 0.18 deleterious(0.03) possibly_damaging(0.703) TCGA-DD-AAE1-01 1 201018205 201018205 C T CACNA1S Missense_Mutation p.V1422M 0.53 deleterious(0) probably_damaging(0.998) TCGA-DD-AAE1-01 1 227843476 227843476 A C ZNF678 Silent p.R509R 0.20 TCGA-DD-AAE1-01 1 235826147 235826147 C T LYST 3'UTR 0.19 TCGA-DD-AAE1-01 1 43637724 43637724 C T EBNA1BP2 Silent p.E77E 0.63 TCGA-DD-AAE1-01 20 31767467 31767467 G T BPIFA2 Missense_Mutation p.V235F 0.38 deleterious(0.02) benign(0.128) TCGA-DD-AAE1-01 20 32255993 32255993 C T ACTL10 Silent p.A230A 0.47 TCGA-DD-AAE1-01 20 32664877 32664877 C T RALY Silent p.G234G 0.05 TCGA-DD-AAE1-01 22 22842492 22842492 C A ZNF280B Missense_Mutation p.R411I 0.45 deleterious(0) probably_damaging(1) TCGA-DD-AAE1-01 22 42091473 42091473 G A C22orf46 3'UTR 0.36 TCGA-DD-AAE1-01 22 44536018 44536018 G A PARVB Missense_Mutation p.R269Q 0.45 tolerated(0.29) benign(0.197) TCGA-DD-AAE1-01 2 201526345 201526345 G C AOX1 Missense_Mutation p.G1140A 0.43 deleterious(0) probably_damaging(1) TCGA-DD-AAE1-01 2 220172166 220172166 C A PTPRN Nonsense_Mutation p.G94* 0.31 TCGA-DD-AAE1-01 2 227661977 227661994 CGGTGGCCATTGCCACCC - IRS1 In_Frame_Del p.G488_R493del 0.30 TCGA-DD-AAE1-01 2 239140836 239140836 T G AC016757.3 5'Flank 0.46 TCGA-DD-AAE1-01 2 27805389 27805389 C T C2orf16 Nonsense_Mutation p.R1984* 0.52 TCGA-DD-AAE1-01 2 27805448 27805448 T C C2orf16 3'UTR 0.44 TCGA-DD-AAE1-01 2 36982071 36982071 C A VIT Missense_Mutation p.L95I 0.55 tolerated(1) benign(0.02) TCGA-DD-AAE1-01 2 60687714 60687714 G A BCL11A Missense_Mutation p.A778V 0.39 deleterious(0) probably_damaging(0.993) TCGA-DD-AAE1-01 3 11685118 11685118 C A VGLL4 5'UTR 0.30 TCGA-DD-AAE1-01 3 184573496 184573496 T C VPS8 Intron 0.28 TCGA-DD-AAE1-01 3 73114930 73114930 A G PPP4R2 3'UTR 0.30 TCGA-DD-AAE1-01 4 17586622 17586622 A T LAP3 Silent p.G189G 0.44 TCGA-DD-AAE1-01 5 11732327 11732327 C T CTNND2 Missense_Mutation p.S32N 0.47 tolerated(0.12) benign(0.25) TCGA-DD-AAE1-01 5 140589015 140589015 A T PCDHB12 Missense_Mutation p.H179L 0.44 deleterious_low_confidence(0.05) possibly_damaging(0.787) TCGA-DD-AAE1-01 5 141318088 141318088 C T KIAA0141 Missense_Mutation p.P438S 0.42 tolerated(0.3) benign(0.014) TCGA-DD-AAE1-01 5 77471662 77471662 C A AP3B1 Missense_Mutation p.R347S 0.40 tolerated(0.37) benign(0.173) TCGA-DD-AAE1-01 6 36454686 36454698 AAGAGAAGGCCTG C KCTD20 In_Frame_Del p.K332_G336delinsR 0.38 TCGA-DD-AAE1-01 6 52268597 52268611 TATGCCAAATATCGT - PAQR8 In_Frame_Del p.A197_Y201del 0.38 TCGA-DD-AAE1-01 7 20683148 20683148 A G ABCB5 Missense_Mutation p.T191A 0.39 tolerated(0.08) benign(0.105) TCGA-DD-AAE1-01 8 145668159 145668159 A G TONSL Missense_Mutation p.M160T 0.31 deleterious(0.03) probably_damaging(0.996) TCGA-DD-AAE1-01 9 19409004 19409004 G A ACER2 5'Flank 0.79 TCGA-DD-AAE1-01 9 86451752 86451752 T C KIF27 3'UTR 0.29 TCGA-DD-AAE1-01 9 95481421 95481421 C T BICD2 Silent p.L502L 0.50 TCGA-DD-AAE1-01 X 148627336 148627336 C T CXorf40A Missense_Mutation p.R54W 0.85 tolerated(0.13) benign(0.002) TCGA-DD-AAE1-01 X 149101933 149101933 G A CXorf40B Missense_Mutation p.R54W 0.13 tolerated(0.15) benign(0.002) TCGA-DD-AAE1-01 X 23020135 23020135 A T DDX53 3'UTR 0.89 TCGA-DD-AAE2-01 10 101993050 101993050 G A CWF19L1 Silent p.D517D 0.59 TCGA-DD-AAE2-01 10 105209713 105209713 C A CALHM2 5'UTR 0.35 TCGA-DD-AAE2-01 10 123239601 123239601 G A FGFR2 Intron 0.40 TCGA-DD-AAE2-01 10 128974496 128974496 G A FAM196A Missense_Mutation p.A55V 0.80 deleterious(0) probably_damaging(0.999) TCGA-DD-AAE2-01 10 26359123 26359123 G A MYO3A Missense_Mutation p.M418I 0.07 deleterious(0.02) possibly_damaging(0.817) TCGA-DD-AAE2-01 10 5032222 5032239 CCAGCAAAACTGGAAAGA GCCAGCAAAACTGGAAAGAG AKR1C2 Splice_Site p.X310_splice 0.16 TCGA-DD-AAE2-01 10 89717669 89717674 ACACGA - PTEN In_Frame_Del p.T232_R233del 0.38 TCGA-DD-AAE2-01 10 90588419 90588422 TCTT - ANKRD22 Frame_Shift_Del p.K72Rfs*9 0.21 TCGA-DD-AAE2-01 11 47441913 47441913 G A PSMC3 Silent p.L343L 0.40 TCGA-DD-AAE2-01 11 61511629 61511629 C G DAGLA Missense_Mutation p.L933V 0.42 deleterious_low_confidence(0.01) benign(0.042) TCGA-DD-AAE2-01 11 66743991 66743991 T A C11orf86 3'UTR 0.62 TCGA-DD-AAE2-01 11 73824881 73824881 T A C2CD3 Missense_Mutation p.K596M 0.23 deleterious(0) probably_damaging(0.976) TCGA-DD-AAE2-01 11 75280247 75280247 G A SERPINH1 Intron 0.35 TCGA-DD-AAE2-01 11 85375725 85375725 G A CREBZF Silent p.A65A 0.42 TCGA-DD-AAE2-01 11 99715619 99715619 C A CNTN5 Missense_Mutation p.P105T 0.37 deleterious(0) probably_damaging(1) TCGA-DD-AAE2-01 12 108600076 108600076 C A WSCD2 Silent p.I131I 0.39 TCGA-DD-AAE2-01 12 111951302 111951302 T A ATXN2 Missense_Mutation p.N633Y 0.06 possibly_damaging(0.492) TCGA-DD-AAE2-01 12 112308139 112308139 A G MAPKAPK5 Missense_Mutation p.N153S 0.35 deleterious(0.03) possibly_damaging(0.677) TCGA-DD-AAE2-01 12 120616729 120616729 G T GCN1L1 Missense_Mutation p.L151M 0.35 benign(0.01) TCGA-DD-AAE2-01 12 30863221 30863221 A C CAPRIN2 Missense_Mutation p.F950C 0.38 deleterious(0) probably_damaging(0.999) TCGA-DD-AAE2-01 12 52908953 52908953 G A KRT5 Missense_Mutation p.L516F 0.38 tolerated(0.71) unknown(0) TCGA-DD-AAE2-01 12 57180920 57180920 A G HSD17B6 Missense_Mutation p.M250V 0.19 tolerated(0.51) benign(0) TCGA-DD-AAE2-01 13 99040698 99040698 A G FARP1 Missense_Mutation p.K274R 0.39 tolerated(0.09) probably_damaging(0.923) TCGA-DD-AAE2-01 14 24661413 24661413 C T TM9SF1 Missense_Mutation p.V373M 0.32 deleterious(0.01) probably_damaging(0.983) TCGA-DD-AAE2-01 14 36017745 36017745 C A RALGAPA1 Intron 0.43 TCGA-DD-AAE2-01 14 50218653 50218653 A G KLHDC1 3'UTR 0.37 TCGA-DD-AAE2-01 14 50713533 50713533 T C L2HGDH 3'UTR 0.55 TCGA-DD-AAE2-01 14 55907152 55907152 T C TBPL2 Missense_Mutation p.T38A 0.36 tolerated_low_confidence(0.31) benign(0.001) TCGA-DD-AAE2-01 14 58830925 58830925 A C ARID4A Missense_Mutation p.L706F 0.41 tolerated_low_confidence(0.17) benign(0.347) TCGA-DD-AAE2-01 14 92040500 92040500 G T AL133373.1 3'UTR 0.40 TCGA-DD-AAE2-01 14 92185810 92185810 T G CATSPERB Missense_Mutation p.I108L 0.34 tolerated(0.72) benign(0.001) TCGA-DD-AAE2-01 14 92470139 92470139 T A TRIP11 Missense_Mutation p.E1394V 0.37 deleterious(0) probably_damaging(0.999) TCGA-DD-AAE2-01 15 24927519 24927519 T A NPAP1 3'UTR 0.41 TCGA-DD-AAE2-01 15 30654974 30654974 C T CHRFAM7A Missense_Mutation p.R254Q 0.21 deleterious(0.03) possibly_damaging(0.834) TCGA-DD-AAE2-01 15 31294091 31294091 C A TRPM1 Silent p.V1621V 0.42 TCGA-DD-AAE2-01 15 32460181 32460181 G A CHRNA7 Missense_Mutation p.R373Q 0.19 deleterious(0.04) probably_damaging(0.975) TCGA-DD-AAE2-01 15 41571555 41571555 G A CHP1 Missense_Mutation p.E186K 0.42 deleterious(0) probably_damaging(0.976) TCGA-DD-AAE2-01 15 43909976 43909976 A T STRC Missense_Mutation p.F215I 0.24 tolerated(0.23) benign(0.007) TCGA-DD-AAE2-01 16 27374453 27374453 G T IL4R Missense_Mutation p.G594C 0.05 tolerated(0.13) probably_damaging(0.91) TCGA-DD-AAE2-01 16 4861735 4861735 T C GLYR1 Missense_Mutation p.I451V 0.40 tolerated(0.4) benign(0.004) TCGA-DD-AAE2-01 16 65025837 65025837 A T CDH11 Silent p.G215G 0.40 TCGA-DD-AAE2-01 16 66887479 66887479 A T CA7 3'UTR 0.44 TCGA-DD-AAE2-01 16 83704424 83704424 G - CDH13 Frame_Shift_Del p.G425Efs*6 0.25 TCGA-DD-AAE2-01 16 89987254 89987254 G T MC1R 3'UTR 0.10 TCGA-DD-AAE2-01 17 39847045 39847045 T C EIF1 Silent p.A103A 0.32 TCGA-DD-AAE2-01 17 41056040 41056040 C T G6PC Missense_Mutation p.T108I 0.44 deleterious(0) probably_damaging(1) TCGA-DD-AAE2-01 17 61623312 61623312 A C KCNH6 3'UTR 0.53 TCGA-DD-AAE2-01 17 72462736 72462736 C T CD300A 5'UTR 0.64 TCGA-DD-AAE2-01 17 7348297 7348297 T C CHRNB1 5'Flank 0.89 TCGA-DD-AAE2-01 17 73738423 73738423 C A ITGB4 Missense_Mutation p.Q879K 0.53 deleterious(0.04) probably_damaging(0.963) TCGA-DD-AAE2-01 17 7976129 7976129 T C ALOX12B Missense_Mutation p.Y689C 0.31 deleterious(0) probably_damaging(1) TCGA-DD-AAE2-01 17 80038617 80038617 G A FASN Silent p.S2259S 0.25 TCGA-DD-AAE2-01 18 5410602 5410602 G T EPB41L3 Missense_Mutation p.T695K 0.63 deleterious(0) probably_damaging(0.995) TCGA-DD-AAE2-01 19 16664490 16664490 C A SLC35E1 Nonstop_Mutation p.*411Yext*27 0.07 TCGA-DD-AAE2-01 19 2810267 2810304 CCTGGGCACTCTGAGGCTCTGCCCCATCCCTGCAGGCG - THOP1 Splice_Site p.X486_splice 0.21 TCGA-DD-AAE2-01 19 33108518 33108518 C A ANKRD27 Missense_Mutation p.V677F 0.34 deleterious(0) possibly_damaging(0.727) TCGA-DD-AAE2-01 19 33698595 33698595 C T LRP3 3'UTR 0.55 TCGA-DD-AAE2-01 19 35622196 35622196 G A LGI4 Intron 0.31 TCGA-DD-AAE2-01 19 49407702 49407702 G A NUCB1 Silent p.E78E 0.41 TCGA-DD-AAE2-01 19 52033118 52033118 G T SIGLEC6 Missense_Mutation p.P291H 0.34 tolerated(0.21) possibly_damaging(0.868) TCGA-DD-AAE2-01 19 5225821 5225821 G A PTPRS Missense_Mutation p.A804V 0.05 tolerated(0.07) possibly_damaging(0.487) TCGA-DD-AAE2-01 19 53996020 53996020 C T ZNF813 3'UTR 0.47 TCGA-DD-AAE2-01 19 54695356 54695356 C T TSEN34 Silent p.G47G 0.42 TCGA-DD-AAE2-01 19 55106839 55106839 C A LILRA1 Silent p.P211P 0.38 TCGA-DD-AAE2-01 1 10316355 10316355 G A KIF1B Missense_Mutation p.D53N 0.13 deleterious(0) probably_damaging(0.99) TCGA-DD-AAE2-01 1 103496781 103496781 A G COL11A1 Missense_Mutation p.L224S 0.27 probably_damaging(1) TCGA-DD-AAE2-01 1 150974849 150974849 A C FAM63A Missense_Mutation p.L130R 0.08 tolerated_low_confidence(0.54) benign(0.004) TCGA-DD-AAE2-01 1 171561054 171561054 C G PRRC2C 3'UTR 0.36 TCGA-DD-AAE2-01 1 177249580 177249580 C T BRINP2 Missense_Mutation p.S423F 0.38 deleterious(0) possibly_damaging(0.819) TCGA-DD-AAE2-01 1 1848609 1848609 G T CALML6 Nonsense_Mutation p.E175* 0.42 TCGA-DD-AAE2-01 1 197313448 197313448 C T CRB1 Silent p.S230S 0.65 TCGA-DD-AAE2-01 1 209796891 209796891 C T LAMB3 Missense_Mutation p.E773K 0.03 tolerated(0.08) benign(0.063) TCGA-DD-AAE2-01 1 212548579 212548580 - A TMEM206 Frame_Shift_Ins p.V344Cfs*4 0.25 TCGA-DD-AAE2-01 1 228111870 228111870 A C WNT9A Missense_Mutation p.V195G 0.36 deleterious(0.02) possibly_damaging(0.878) TCGA-DD-AAE2-01 1 228525039 228525039 C T OBSCN Silent p.I6542I 0.39 TCGA-DD-AAE2-01 1 240256917 240256917 T A FMN2 Missense_Mutation p.L503Q 0.08 unknown(0) TCGA-DD-AAE2-01 1 240371332 240371332 A T FMN2 Missense_Mutation p.I1074L 0.22 unknown(0) TCGA-DD-AAE2-01 1 27333377 27333377 G A FAM46B Silent p.S112S 0.45 TCGA-DD-AAE2-01 1 45271451 45271451 G A PLK3 3'UTR 0.33 TCGA-DD-AAE2-01 1 45345676 45345676 G A EIF2B3 Silent p.I263I 0.38 TCGA-DD-AAE2-01 1 84543803 84543803 C T RP11-486G15.2 5'Flank 0.14 TCGA-DD-AAE2-01 1 92430272 92430272 G A BRDT Missense_Mutation p.C94Y 0.36 deleterious(0) probably_damaging(1) TCGA-DD-AAE2-01 20 43108747 43108747 A T TTPAL Silent p.T36T 0.36 TCGA-DD-AAE2-01 20 5565200 5565201 - C GPCPD1 Intron 0.22 TCGA-DD-AAE2-01 21 31744028 31744028 T A KRTAP13-2 Silent p.S168S 0.38 TCGA-DD-AAE2-01 22 18769191 18769191 T A GGT3P RNA 0.15 TCGA-DD-AAE2-01 22 21343966 21344002 GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA - LZTR1 Splice_Site p.X217_splice 0.26 TCGA-DD-AAE2-01 22 32019822 32019822 G - PISD Frame_Shift_Del p.Q23Sfs*4 0.27 TCGA-DD-AAE2-01 22 44892922 44892922 T C LDOC1L Missense_Mutation p.E172G 0.47 deleterious(0) possibly_damaging(0.859) TCGA-DD-AAE2-01 22 50921204 50921204 C A ADM2 Silent p.R107R 0.40 TCGA-DD-AAE2-01 2 128622659 128622659 A T AMMECR1L 3'UTR 0.74 TCGA-DD-AAE2-01 2 166870366 166870366 T G SCN1A Missense_Mutation p.E1198A 0.62 tolerated(0.24) benign(0.117) TCGA-DD-AAE2-01 2 179368870 179368870 A G PLEKHA3 3'UTR 0.44 TCGA-DD-AAE2-01 2 1893081 1893081 C A MYT1L Missense_Mutation p.D816Y 0.45 deleterious(0) possibly_damaging(0.847) TCGA-DD-AAE2-01 2 277439 277440 - A ACP1 3'UTR 0.28 TCGA-DD-AAE2-01 2 48914826 48914826 G A LHCGR 3'UTR 0.45 TCGA-DD-AAE2-01 2 88422691 88422691 T C FABP1 Intron 0.46 TCGA-DD-AAE2-01 3 148714621 148714621 C T GYG1 Silent p.F137F 0.05 TCGA-DD-AAE2-01 3 151161667 151161667 C T IGSF10 Missense_Mutation p.D1690N 0.32 deleterious(0.04) benign(0.098) TCGA-DD-AAE2-01 3 182988793 182988793 C A B3GNT5 3'UTR 0.39 TCGA-DD-AAE2-01 3 38651412 38651412 C G SCN5A Missense_Mutation p.K249N 0.29 tolerated(0.06) probably_damaging(0.999) TCGA-DD-AAE2-01 3 48473668 48473668 C T CCDC51 3'UTR 0.27 TCGA-DD-AAE2-01 4 123301299 123301299 A T ADAD1 Silent p.P25P 0.42 TCGA-DD-AAE2-01 4 123305084 123305084 A G ADAD1 Silent p.Q164Q 0.40 TCGA-DD-AAE2-01 4 123663998 123663998 T A BBS12 Silent p.T317T 0.36 TCGA-DD-AAE2-01 4 15482406 15482406 C G CC2D2A Missense_Mutation p.P68A 0.34 tolerated_low_confidence(0.06) benign(0.004) TCGA-DD-AAE2-01 4 159048727 159048727 G C FAM198B Missense_Mutation p.H472Q 0.46 tolerated(0.28) possibly_damaging(0.839) TCGA-DD-AAE2-01 4 174223196 174223196 A T GALNT7 Splice_Site p.X383_splice 0.37 TCGA-DD-AAE2-01 4 2940402 2940402 T G NOP14 3'UTR 0.46 TCGA-DD-AAE2-01 4 38055878 38055878 C T TBC1D1 Missense_Mutation p.R657W 0.30 deleterious(0) probably_damaging(0.991) TCGA-DD-AAE2-01 5 102886412 102886412 T A NUDT12 3'UTR 0.39 TCGA-DD-AAE2-01 5 135510316 135510316 G A SMAD5 Missense_Mutation p.V417I 0.45 tolerated(0.06) possibly_damaging(0.826) TCGA-DD-AAE2-01 5 135693062 135693062 C G TRPC7 Missense_Mutation p.S5T 0.25 tolerated_low_confidence(0.17) benign(0.017) TCGA-DD-AAE2-01 5 137627755 137627755 G T CDC25C Missense_Mutation p.N222K 0.40 tolerated(0.26) benign(0.416) TCGA-DD-AAE2-01 5 138223237 138223237 T C CTNNA1 Missense_Mutation p.L401P 0.46 deleterious(0) probably_damaging(1) TCGA-DD-AAE2-01 5 138223240 138223240 T A CTNNA1 Nonsense_Mutation p.L402* 0.46 TCGA-DD-AAE2-01 5 140482111 140482111 C T PCDHB3 Silent p.T626T 0.07 TCGA-DD-AAE2-01 5 140574260 140574260 C T PCDHB10 Missense_Mutation p.A712V 0.45 tolerated_low_confidence(0.13) benign(0.172) TCGA-DD-AAE2-01 5 140794696 140794696 G T PCDHGA10 Missense_Mutation p.D652Y 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-DD-AAE2-01 5 37396563 37396563 G A WDR70 Missense_Mutation p.G128E 0.04 tolerated(0.72) benign(0) TCGA-DD-AAE2-01 5 66386029 66386029 G C MAST4 Missense_Mutation p.S268T 0.42 benign(0.437) TCGA-DD-AAE2-01 6 123318708 123318708 A G CLVS2 5'UTR 0.30 TCGA-DD-AAE2-01 6 128540089 128540089 A G PTPRK Silent p.N282N 0.44 TCGA-DD-AAE2-01 6 134496829 134496829 C G SGK1 Intron 0.59 TCGA-DD-AAE2-01 6 30672153 30672153 T A MDC1 Missense_Mutation p.R1603W 0.04 deleterious(0) probably_damaging(0.975) TCGA-DD-AAE2-01 6 64395611 64395611 T A PHF3 Missense_Mutation p.L663Q 0.42 tolerated(0.14) benign(0.041) TCGA-DD-AAE2-01 7 106827063 106827063 T G HBP1 Silent p.V234V 0.38 TCGA-DD-AAE2-01 7 106827072 106827072 T G HBP1 Missense_Mutation p.F237L 0.37 tolerated(1) benign(0.055) TCGA-DD-AAE2-01 7 106827075 106827075 T C HBP1 Silent p.A238A 0.37 TCGA-DD-AAE2-01 7 106843944 106843944 A C COG5 3'UTR 0.07 TCGA-DD-AAE2-01 7 106843989 106843989 A T COG5 Missense_Mutation p.L852H 0.29 deleterious(0) probably_damaging(1) TCGA-DD-AAE2-01 7 138602235 138602235 G A KIAA1549 Missense_Mutation p.R713C 0.36 tolerated(0.16) benign(0.394) TCGA-DD-AAE2-01 7 37989827 37989827 A T EPDR1 Silent p.T168T 0.36 TCGA-DD-AAE2-01 7 48313535 48313535 C A ABCA13 Missense_Mutation p.F1424L 0.34 benign(0.012) TCGA-DD-AAE2-01 7 65338522 65338522 G T VKORC1L1 Missense_Mutation p.W55L 0.34 tolerated(0.6) benign(0.033) TCGA-DD-AAE2-01 7 99247819 99247819 T C CYP3A5 Missense_Mutation p.I430M 0.25 tolerated(0.14) benign(0.062) TCGA-DD-AAE2-01 8 121228707 121228707 C A COL14A1 Missense_Mutation p.A572E 0.28 tolerated(0.07) benign(0.005) TCGA-DD-AAE2-01 8 15508269 15508269 C G TUSC3 Missense_Mutation p.N124K 0.51 tolerated(0.19) possibly_damaging(0.604) TCGA-DD-AAE2-01 8 82598148 82598148 C T IMPA1 Translation_Start_Site p.M1? 0.37 benign(0.043) TCGA-DD-AAE2-01 8 94937359 94937359 G A PDP1 3'UTR 0.35 TCGA-DD-AAE2-01 9 125865642 125865642 C A RABGAP1 3'UTR 0.60 TCGA-DD-AAE2-01 9 130434340 130434340 G A STXBP1 Missense_Mutation p.R325Q 0.47 deleterious(0.02) benign(0.227) TCGA-DD-AAE2-01 9 139938033 139938033 C G NPDC1 Intron 0.24 TCGA-DD-AAE2-01 9 17416135 17416135 A G CNTLN Missense_Mutation p.H1021R 0.41 tolerated(0.39) benign(0.156) TCGA-DD-AAE2-01 X 30237136 30237136 G C MAGEB2 Missense_Mutation p.E147Q 0.83 tolerated(0.23) benign(0.14) TCGA-DD-AAE2-01 X 40510901 40510901 G A MED14 3'UTR 0.77 TCGA-DD-AAE2-01 X 53672263 53672263 C T HUWE1 Silent p.E168E 0.77 TCGA-DD-AAE3-01 10 101982718 101982718 C A CHUK Missense_Mutation p.V74L 0.42 deleterious(0.03) possibly_damaging(0.589) TCGA-DD-AAE3-01 10 120791820 120791820 T C NANOS1 3'UTR 0.16 TCGA-DD-AAE3-01 10 16859228 16859228 G A RSU1 5'UTR 0.28 TCGA-DD-AAE3-01 10 26802578 26802578 A - APBB1IP Frame_Shift_Del p.N269Tfs*22 0.09 TCGA-DD-AAE3-01 10 52071136 52071136 T G SGMS1 Missense_Mutation p.K261Q 0.23 tolerated(0.39) benign(0.298) TCGA-DD-AAE3-01 10 5808025 5808025 C A GDI2 Nonsense_Mutation p.E428* 0.17 TCGA-DD-AAE3-01 10 64568212 64568212 A G ADO 3'UTR 0.23 TCGA-DD-AAE3-01 10 64936130 64936130 T C JMJD1C Missense_Mutation p.Y2443C 0.23 deleterious(0.01) probably_damaging(0.969) TCGA-DD-AAE3-01 10 85909910 85909910 C T GHITM Missense_Mutation p.T231I 0.47 tolerated(0.08) benign(0.063) TCGA-DD-AAE3-01 10 85958825 85958825 A G CDHR1 Missense_Mutation p.N129S 0.19 deleterious(0) probably_damaging(0.925) TCGA-DD-AAE3-01 10 94239137 94239137 T C IDE Missense_Mutation p.Y594C 0.23 tolerated(0.12) benign(0.008) TCGA-DD-AAE3-01 11 103908223 103908223 G C DDI1 Missense_Mutation p.E225Q 0.19 tolerated(0.16) benign(0.371) TCGA-DD-AAE3-01 11 132812840 132812840 C G OPCML Missense_Mutation p.G50R 0.49 deleterious(0) probably_damaging(0.952) TCGA-DD-AAE3-01 11 14490346 14490346 G C COPB1 Missense_Mutation p.L676V 0.35 deleterious(0) probably_damaging(0.927) TCGA-DD-AAE3-01 11 18478193 18478193 G A LDHAL6A 5'UTR 0.24 TCGA-DD-AAE3-01 11 30255507 30255507 A G FSHB 3'UTR 0.15 TCGA-DD-AAE3-01 11 57886028 57886028 C T OR9I1 Missense_Mutation p.V297I 0.34 deleterious(0.02) probably_damaging(0.997) TCGA-DD-AAE3-01 11 62291791 62291791 T A AHNAK Silent p.T3366T 0.35 TCGA-DD-AAE3-01 11 66034923 66034923 G T KLC2 3'UTR 0.35 TCGA-DD-AAE3-01 11 66206280 66206280 T C MRPL11 5'UTR 0.11 TCGA-DD-AAE3-01 11 93521276 93521276 G C MED17 Missense_Mutation p.R120S 0.20 deleterious(0) benign(0.081) TCGA-DD-AAE3-01 12 112460383 112460383 A C ERP29 Missense_Mutation p.K238T 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-DD-AAE3-01 12 117658076 117658076 T C NOS1 Splice_Site p.X1360_splice 0.33 TCGA-DD-AAE3-01 12 121206182 121206182 T G SPPL3 Missense_Mutation p.N240T 0.20 tolerated(0.13) benign(0.017) TCGA-DD-AAE3-01 12 21013982 21013982 C A SLCO1B3 Missense_Mutation p.P131T 0.73 tolerated(0.26) benign(0.034) TCGA-DD-AAE3-01 12 46754959 46754959 T C SLC38A2 Missense_Mutation p.M486V 0.23 deleterious(0.01) possibly_damaging(0.688) TCGA-DD-AAE3-01 12 48544981 48544981 T A ASB8 Intron 0.22 TCGA-DD-AAE3-01 12 49742904 49742904 C G DNAJC22 Silent p.A83A 0.79 TCGA-DD-AAE3-01 12 52912936 52912936 G T KRT5 Missense_Mutation p.F188L 0.72 deleterious(0) possibly_damaging(0.734) TCGA-DD-AAE3-01 12 56641954 56641954 G A ANKRD52 Silent p.L611L 0.23 TCGA-DD-AAE3-01 12 57532258 57532258 C G LRP1 Missense_Mutation p.S28R 0.14 possibly_damaging(0.877) TCGA-DD-AAE3-01 12 75892688 75892688 T C GLIPR1 Missense_Mutation p.I244T 0.23 deleterious(0.04) benign(0.058) TCGA-DD-AAE3-01 13 111567223 111567223 A C ANKRD10 Missense_Mutation p.L20R 0.13 deleterious(0.01) probably_damaging(0.991) TCGA-DD-AAE3-01 13 39455009 39455009 A G FREM2 3'UTR 0.23 TCGA-DD-AAE3-01 13 46425801 46425801 C T SIAH3 5'UTR 0.20 TCGA-DD-AAE3-01 13 78318570 78318570 A G SLAIN1 Intron 0.72 TCGA-DD-AAE3-01 13 88330117 88330117 G T SLITRK5 Missense_Mutation p.S825I 0.15 tolerated(0.11) benign(0.007) TCGA-DD-AAE3-01 13 98674169 98674169 T C IPO5 3'UTR 0.23 TCGA-DD-AAE3-01 14 20876563 20876563 T A TEP1 Silent p.P12P 0.12 TCGA-DD-AAE3-01 14 21702133 21702133 T C HNRNPC Missense_Mutation p.M74V 0.12 tolerated(0.69) benign(0.235) TCGA-DD-AAE3-01 14 23945267 23945267 A C NGDN Missense_Mutation p.E150D 0.12 tolerated(0.44) benign(0.008) TCGA-DD-AAE3-01 14 24033989 24033989 T G AP1G2 Intron 0.14 TCGA-DD-AAE3-01 14 26917256 26917256 G - NOVA1 Frame_Shift_Del p.P478Qfs*10 0.10 TCGA-DD-AAE3-01 14 35331372 35331372 T C BAZ1A Silent p.L90L 0.11 TCGA-DD-AAE3-01 14 53196987 53197025 CGACCCTCCTCTTCCCTGTCTTCGCCGCCGCCGCTGCTG - STYX 5'UTR 0.36 TCGA-DD-AAE3-01 14 65208353 65208353 A G PLEKHG3 Silent p.E650E 0.17 TCGA-DD-AAE3-01 14 71413714 71413714 A G PCNX Missense_Mutation p.Y79C 0.12 deleterious(0) possibly_damaging(0.713) TCGA-DD-AAE3-01 14 74824495 74824495 C G VRTN Missense_Mutation p.Q337E 0.53 tolerated(0.36) probably_damaging(0.98) TCGA-DD-AAE3-01 14 75537802 75537802 A G ZC2HC1C Missense_Mutation p.R176G 0.18 tolerated(0.11) benign(0.001) TCGA-DD-AAE3-01 14 96770845 96770845 A G ATG2B Missense_Mutation p.I1610T 0.12 deleterious(0) benign(0.115) TCGA-DD-AAE3-01 15 25222034 25222034 C A SNRPN Missense_Mutation p.A93D 0.09 deleterious(0.02) possibly_damaging(0.56) TCGA-DD-AAE3-01 15 38766446 38766446 A G FAM98B Missense_Mutation p.M226V 0.19 tolerated(0.57) benign(0.038) TCGA-DD-AAE3-01 15 41988901 41988901 A G MGA Missense_Mutation p.I565V 0.12 tolerated_low_confidence(0.51) benign(0.001) TCGA-DD-AAE3-01 15 43308056 43308056 A - UBR1 Frame_Shift_Del p.D1013Efs*84 0.12 TCGA-DD-AAE3-01 15 52356215 52356215 A G MAPK6 Missense_Mutation p.Q395R 0.21 deleterious(0) probably_damaging(0.977) TCGA-DD-AAE3-01 15 52970254 52970254 T C FAM214A 5'UTR 0.25 TCGA-DD-AAE3-01 15 57734582 57734582 A G CGNL1 Missense_Mutation p.N570S 0.15 tolerated(0.12) possibly_damaging(0.742) TCGA-DD-AAE3-01 15 65995317 65995317 T C DENND4A Missense_Mutation p.N706S 0.22 tolerated(0.11) benign(0) TCGA-DD-AAE3-01 15 78782771 78782771 A G IREB2 Missense_Mutation p.N695S 0.16 tolerated(0.3) benign(0.001) TCGA-DD-AAE3-01 15 81199078 81199078 C A KIAA1199 Silent p.R496R 0.31 TCGA-DD-AAE3-01 15 88690618 88690618 G T NTRK3 Silent p.R138R 0.31 TCGA-DD-AAE3-01 16 11770725 11770725 A G SNN 3'UTR 0.35 TCGA-DD-AAE3-01 16 2287636 2287636 A C DNASE1L2 Missense_Mutation p.K193Q 0.21 deleterious(0.03) possibly_damaging(0.882) TCGA-DD-AAE3-01 16 23430073 23430073 T A COG7 Missense_Mutation p.Y362F 0.24 tolerated(0.05) possibly_damaging(0.588) TCGA-DD-AAE3-01 16 23578364 23578364 G T UBFD1 Nonsense_Mutation p.E265* 0.21 TCGA-DD-AAE3-01 16 30456786 30456786 C A SEPHS2 Missense_Mutation p.G88V 0.56 benign(0.039) TCGA-DD-AAE3-01 16 66757681 66757681 T C DYNC1LI2 Missense_Mutation p.M475V 0.10 deleterious(0.01) benign(0.16) TCGA-DD-AAE3-01 16 68856096 68856096 G T CDH1 Missense_Mutation p.S635I 0.66 tolerated(0.08) possibly_damaging(0.78) TCGA-DD-AAE3-01 16 71795430 71795430 T C AP1G1 Missense_Mutation p.N323S 0.14 tolerated(0.73) benign(0.019) TCGA-DD-AAE3-01 16 88721693 88721693 A C MVD Missense_Mutation p.F271V 0.20 tolerated(0.12) possibly_damaging(0.57) TCGA-DD-AAE3-01 17 10618803 10618803 G C TMEM220 Silent p.S150S 0.15 TCGA-DD-AAE3-01 17 18193904 18193904 C G TOP3A Missense_Mutation p.D522H 0.14 deleterious(0) probably_damaging(1) TCGA-DD-AAE3-01 17 30658777 30658777 T A C17orf75 3'UTR 0.19 TCGA-DD-AAE3-01 17 3573010 3573010 A C P2RX5 3'Flank 0.12 TCGA-DD-AAE3-01 17 38926350 38926350 C A KRT26 Missense_Mutation p.A236S 0.24 tolerated(0.67) benign(0.039) TCGA-DD-AAE3-01 17 45752005 45752005 A G KPNB1 Missense_Mutation p.N590S 0.14 tolerated(1) benign(0) TCGA-DD-AAE3-01 17 53040188 53040188 T G COX11 Missense_Mutation p.D246A 0.15 deleterious(0) probably_damaging(1) TCGA-DD-AAE3-01 17 57758823 57758823 A G CLTC Missense_Mutation p.N1078S 0.13 tolerated(0.07) probably_damaging(0.999) TCGA-DD-AAE3-01 17 66040111 66040111 C G KPNA2 Missense_Mutation p.T363R 0.45 deleterious(0) probably_damaging(1) TCGA-DD-AAE3-01 18 23872237 23872237 G - TAF4B Frame_Shift_Del p.E540Kfs*4 0.24 TCGA-DD-AAE3-01 19 10218695 10218695 A T PPAN Missense_Mutation p.Q133L 0.20 deleterious(0.02) probably_damaging(0.995) TCGA-DD-AAE3-01 19 12089392 12089392 A G ZNF763 Missense_Mutation p.H221R 0.26 deleterious(0.01) possibly_damaging(0.731) TCGA-DD-AAE3-01 19 12430381 12430381 T C ZNF563 Missense_Mutation p.H153R 0.17 tolerated(0.36) benign(0.006) TCGA-DD-AAE3-01 19 17320447 17320447 G C MYO9B Missense_Mutation p.E1893Q 0.06 tolerated(0.51) benign(0.185) TCGA-DD-AAE3-01 19 19767906 19767906 A C ATP13A1 Missense_Mutation p.F268C 0.08 deleterious(0) probably_damaging(1) TCGA-DD-AAE3-01 19 19990922 19990922 A G ZNF253 Missense_Mutation p.M65V 0.10 tolerated(0.51) benign(0.002) TCGA-DD-AAE3-01 19 21132307 21132307 T C ZNF85 Silent p.L329L 0.38 TCGA-DD-AAE3-01 19 21561226 21561226 T G ZNF738 3'UTR 0.29 TCGA-DD-AAE3-01 19 22574065 22574065 C A ZNF98 3'UTR 0.17 TCGA-DD-AAE3-01 19 41850715 41850715 C T TGFB1 Missense_Mutation p.D191N 0.16 tolerated(0.12) benign(0.005) TCGA-DD-AAE3-01 19 42128109 42128109 C T CEACAM4 Missense_Mutation p.V153I 0.40 tolerated(1) benign(0.006) TCGA-DD-AAE3-01 19 45153150 45153160 GCGTCTCCACA - PVR Frame_Shift_Del p.C166Wfs*60 0.10 TCGA-DD-AAE3-01 19 46326692 46326692 G C SYMPK Missense_Mutation p.L880V 0.26 deleterious(0) possibly_damaging(0.763) TCGA-DD-AAE3-01 19 47770041 47770041 C T CCDC9 Silent p.T298T 0.38 TCGA-DD-AAE3-01 19 52934712 52934712 A G ZNF534 5'UTR 0.40 TCGA-DD-AAE3-01 19 54611772 54611772 A G NDUFA3 3'Flank 0.20 TCGA-DD-AAE3-01 19 58879429 58879429 C A ZNF837 Missense_Mutation p.C424F 0.42 deleterious(0) probably_damaging(0.994) TCGA-DD-AAE3-01 19 58945338 58945338 A C ZNF132 Missense_Mutation p.D491E 0.32 tolerated(1) benign(0) TCGA-DD-AAE3-01 19 6713480 6713480 T C C3 Missense_Mutation p.I272V 0.11 tolerated(0.25) benign(0.019) TCGA-DD-AAE3-01 1 100155039 100155039 A G PALMD Missense_Mutation p.N408S 0.19 tolerated(0.09) benign(0.003) TCGA-DD-AAE3-01 1 10190648 10190648 A T UBE4B Missense_Mutation p.S596C 0.27 deleterious(0) probably_damaging(0.981) TCGA-DD-AAE3-01 1 103385871 103385871 T A COL11A1 Missense_Mutation p.E1253V 0.22 unknown(0) TCGA-DD-AAE3-01 1 110256136 110256136 A C GSTM5 Missense_Mutation p.I70L 0.04 tolerated(0.71) benign(0.128) TCGA-DD-AAE3-01 1 115256457 115256457 T C NRAS Missense_Mutation p.N85S 0.28 tolerated(0.08) benign(0.028) TCGA-DD-AAE3-01 1 1179473 1179473 C T FAM132A Missense_Mutation p.R131H 0.30 tolerated(0.34) benign(0.004) TCGA-DD-AAE3-01 1 145439791 145439791 T A TXNIP Missense_Mutation p.S113T 0.22 tolerated(0.12) benign(0.06) TCGA-DD-AAE3-01 1 151065781 151065781 C - GABPB2 Frame_Shift_Del p.H131Mfs*13 0.09 TCGA-DD-AAE3-01 1 155948221 155948221 T G ARHGEF2 5'UTR 0.13 TCGA-DD-AAE3-01 1 160342079 160342079 C T NHLH1 3'UTR 0.11 TCGA-DD-AAE3-01 1 211843634 211843634 A G NEK2 Silent p.L252L 0.12 TCGA-DD-AAE3-01 1 226128898 226128898 G T LEFTY2 5'UTR 0.67 TCGA-DD-AAE3-01 1 226180658 226180658 G A SDE2 Missense_Mutation p.T95I 0.15 deleterious(0) probably_damaging(1) TCGA-DD-AAE3-01 1 227222414 227222414 T C CDC42BPA Missense_Mutation p.I1105V 0.07 tolerated(0.67) benign(0.004) TCGA-DD-AAE3-01 1 235617616 235617628 TTCAGTCTGAAAC - B3GALNT2 Splice_Site p.X384_splice 0.12 TCGA-DD-AAE3-01 1 235922871 235922871 T C LYST Silent p.Q2094Q 0.14 TCGA-DD-AAE3-01 1 236415384 236415384 A C ERO1LB Missense_Mutation p.I105S 0.17 deleterious(0) benign(0.297) TCGA-DD-AAE3-01 1 247615038 247615038 G C OR2B11 Missense_Mutation p.P83A 0.10 deleterious(0.01) probably_damaging(0.994) TCGA-DD-AAE3-01 1 25775415 25775415 A G TMEM57 Silent p.V113V 0.29 TCGA-DD-AAE3-01 1 29475685 29475685 C T SRSF4 Missense_Mutation p.R241Q 0.22 tolerated(0.08) benign(0.238) TCGA-DD-AAE3-01 1 32660748 32660748 A C TXLNA Missense_Mutation p.E531D 0.20 tolerated(0.22) benign(0.001) TCGA-DD-AAE3-01 1 38327880 38327880 T C INPP5B 3'UTR 0.45 TCGA-DD-AAE3-01 1 43300793 43300793 T G ERMAP Missense_Mutation p.L173R 0.29 tolerated(0.55) benign(0.372) TCGA-DD-AAE3-01 1 52250182 52250182 A G OSBPL9 Missense_Mutation p.Y596C 0.06 deleterious(0) probably_damaging(0.981) TCGA-DD-AAE3-01 1 53580429 53580429 C A SLC1A7 Splice_Site p.X144_splice 0.60 TCGA-DD-AAE3-01 1 9416228 9416228 A G SPSB1 Missense_Mutation p.Y93C 0.30 deleterious(0) probably_damaging(0.979) TCGA-DD-AAE3-01 20 21142657 21142657 A G RP4-777D9.2 Intron 0.10 TCGA-DD-AAE3-01 20 23335158 23335158 A C NXT1 3'UTR 0.03 TCGA-DD-AAE3-01 20 3675089 3675089 G A SIGLEC1 Missense_Mutation p.P1012L 0.10 tolerated(0.07) benign(0.02) TCGA-DD-AAE3-01 20 51871290 51871292 GTT - TSHZ2 In_Frame_Del p.L432del 0.09 TCGA-DD-AAE3-01 20 56138214 56138214 T G PCK1 Silent p.A247A 0.51 TCGA-DD-AAE3-01 20 57569232 57569250 ATGACAGCATCGCAGGTAC - NELFCD Frame_Shift_Del p.N568Tfs*11 0.10 TCGA-DD-AAE3-01 20 62152889 62152889 A G PPDPF Missense_Mutation p.N27S 0.11 tolerated(0.3) benign(0.187) TCGA-DD-AAE3-01 21 31654629 31654629 A T KRTAP24-1 Missense_Mutation p.Y208N 0.19 tolerated(0.13) benign(0.1) TCGA-DD-AAE3-01 21 33705673 33705673 T C URB1 Missense_Mutation p.Y1638C 0.25 deleterious(0) probably_damaging(1) TCGA-DD-AAE3-01 21 34003602 34003633 AATTTTTAATGTAGACTGGCCCTGTAGATCAA - SYNJ1 Frame_Shift_Del p.F1504* 0.22 TCGA-DD-AAE3-01 21 37444637 37444637 T A CBR1 Intron 0.28 TCGA-DD-AAE3-01 21 39426854 39426854 A T DSCR4 3'UTR 0.25 TCGA-DD-AAE3-01 22 21996797 21996797 A G SDF2L1 Missense_Mutation p.I58V 0.21 tolerated(1) benign(0.005) TCGA-DD-AAE3-01 22 26902861 26902861 G A TFIP11 Silent p.I81I 0.29 TCGA-DD-AAE3-01 22 32215183 32215183 A G DEPDC5 Silent p.R614R 0.17 TCGA-DD-AAE3-01 22 39079853 39079853 A G TOMM22 3'UTR 0.19 TCGA-DD-AAE3-01 22 44282314 44282314 G A PNPLA5 Missense_Mutation p.P273L 0.26 tolerated(0.13) benign(0.027) TCGA-DD-AAE3-01 2 109086974 109086974 C A GCC2 Missense_Mutation p.Q397K 0.39 tolerated(0.6) probably_damaging(0.952) TCGA-DD-AAE3-01 2 119915526 119915526 T G C1QL2 Missense_Mutation p.E107A 0.18 tolerated(0.26) benign(0.091) TCGA-DD-AAE3-01 2 179622641 179622652 ATCCTGAAAAGA GTC TTN Splice_Site p.X3435_splice 0.10 TCGA-DD-AAE3-01 2 183291302 183291302 T A PDE1A Intron 0.16 TCGA-DD-AAE3-01 2 198273248 198273248 T A SF3B1 Missense_Mutation p.D321V 0.44 tolerated(0.12) benign(0.002) TCGA-DD-AAE3-01 2 203880883 203880883 A G NBEAL1 5'UTR 0.27 TCGA-DD-AAE3-01 2 219646887 219646888 - GG CYP27A1 5'UTR 0.17 TCGA-DD-AAE3-01 2 239049437 239049437 G A KLHL30 Silent p.S14S 0.20 TCGA-DD-AAE3-01 2 27327254 27327254 A C CGREF1 Intron 0.43 TCGA-DD-AAE3-01 2 3193108 3193108 T G TSSC1 Silent p.L387L 0.23 TCGA-DD-AAE3-01 2 5832874 5832874 C T SOX11 Silent p.S7S 0.18 TCGA-DD-AAE3-01 2 65305030 65305030 A C CEP68 Missense_Mutation p.Q679P 0.18 deleterious(0) probably_damaging(0.999) TCGA-DD-AAE3-01 2 69475124 69475124 T C ANTXR1 3'UTR 0.19 TCGA-DD-AAE3-01 2 96789942 96789942 C A ASTL Missense_Mutation p.A315S 0.04 deleterious_low_confidence(0.01) benign(0.173) TCGA-DD-AAE3-01 2 98165921 98165921 T C ANKRD36B RNA 0.06 TCGA-DD-AAE3-01 2 99721827 99721827 G T TSGA10 Missense_Mutation p.H152N 0.15 tolerated(0.07) benign(0.036) TCGA-DD-AAE3-01 3 184290389 184290389 C T EPHB3 Missense_Mutation p.T94M 0.10 deleterious(0) probably_damaging(0.995) TCGA-DD-AAE3-01 3 3170741 3170741 A G TRNT1 Missense_Mutation p.Y6C 0.15 tolerated_low_confidence(0.17) benign(0) TCGA-DD-AAE3-01 3 41266101 41266101 C G CTNNB1 Missense_Mutation p.S33C 0.14 deleterious(0) probably_damaging(0.987) TCGA-DD-AAE3-01 3 48732435 48732435 T A IP6K2 Intron 0.26 TCGA-DD-AAE3-01 3 58487086 58487086 T G KCTD6 Silent p.T147T 0.22 TCGA-DD-AAE3-01 3 73111063 73111063 A G EBLN2 5'UTR 0.15 TCGA-DD-AAE3-01 3 88041511 88041511 A C HTR1F 3'UTR 0.43 TCGA-DD-AAE3-01 3 97660086 97660086 T C CRYBG3 Missense_Mutation p.I919T 0.18 deleterious(0.01) benign(0.009) TCGA-DD-AAE3-01 3 98188512 98188512 T A OR5K1 Missense_Mutation p.F31Y 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-DD-AAE3-01 4 100047761 100047761 T C ADH4 Missense_Mutation p.M368V 0.24 deleterious(0) benign(0.025) TCGA-DD-AAE3-01 4 106159338 106159338 A G TET2 Intron 0.36 TCGA-DD-AAE3-01 4 124324121 124324121 A G SPRY1 3'UTR 0.09 TCGA-DD-AAE3-01 4 17806312 17806312 T C DCAF16 5'UTR 0.23 TCGA-DD-AAE3-01 4 183721241 183721241 C T TENM3 Silent p.L2613L 0.20 TCGA-DD-AAE3-01 4 27024677 27024677 C T STIM2 3'UTR 0.48 TCGA-DD-AAE3-01 4 57797908 57797908 A G REST Missense_Mutation p.I962V 0.19 tolerated(0.13) benign(0.009) TCGA-DD-AAE3-01 4 6598950 6598950 C T MAN2B2 Silent p.L390L 0.17 TCGA-DD-AAE3-01 4 79204050 79204050 C T FRAS1 Missense_Mutation p.S395F 0.44 possibly_damaging(0.897) TCGA-DD-AAE3-01 4 8607787 8607787 C T CPZ Silent p.L261L 0.39 TCGA-DD-AAE3-01 4 86922120 86922120 C T ARHGAP24 3'UTR 0.27 TCGA-DD-AAE3-01 5 102509660 102509660 A G PPIP5K2 Missense_Mutation p.Y838C 0.06 deleterious(0) probably_damaging(0.923) TCGA-DD-AAE3-01 5 10258287 10258287 A G CCT5 Missense_Mutation p.M199V 0.15 tolerated(0.06) benign(0.015) TCGA-DD-AAE3-01 5 108714751 108714751 T C PJA2 Missense_Mutation p.Y146C 0.08 tolerated(0.08) benign(0.02) TCGA-DD-AAE3-01 5 109120501 109120501 A G MAN2A1 Missense_Mutation p.N545S 0.14 tolerated(1) benign(0.005) TCGA-DD-AAE3-01 5 112175960 112175960 A G APC Missense_Mutation p.I1557V 0.13 benign(0) TCGA-DD-AAE3-01 5 134116885 134116885 T G DDX46 Missense_Mutation p.D276E 0.16 tolerated(0.54) benign(0.001) TCGA-DD-AAE3-01 5 137733999 137733999 A G KDM3B Silent p.K988K 0.13 TCGA-DD-AAE3-01 5 13870897 13870898 - A DNAH5 Frame_Shift_Ins p.F1272Lfs*7 0.10 TCGA-DD-AAE3-01 5 148719573 148719573 T A AFAP1L1 Missense_Mutation p.W763R 0.39 deleterious(0.01) benign(0.432) TCGA-DD-AAE3-01 5 154311736 154311736 T C GEMIN5 Missense_Mutation p.D195G 0.11 tolerated(0.11) probably_damaging(0.967) TCGA-DD-AAE3-01 5 156649918 156649918 G C ITK Missense_Mutation p.D181H 0.11 deleterious(0.03) probably_damaging(0.995) TCGA-DD-AAE3-01 5 169310508 169310508 A G FAM196B Missense_Mutation p.I132T 0.30 tolerated(0.09) benign(0.067) TCGA-DD-AAE3-01 5 176449747 176449747 A G ZNF346 Missense_Mutation p.Y3C 0.11 tolerated_low_confidence(0.16) benign(0.001) TCGA-DD-AAE3-01 5 32000249 32000249 G C PDZD2 Missense_Mutation p.G376R 0.39 deleterious(0) probably_damaging(0.95) TCGA-DD-AAE3-01 5 34823676 34823676 G A RAI14 Missense_Mutation p.E580K 0.23 deleterious(0.05) probably_damaging(0.999) TCGA-DD-AAE3-01 5 37292009 37292009 A C NUP155 Missense_Mutation p.L1390R 0.14 deleterious(0) probably_damaging(0.95) TCGA-DD-AAE3-01 5 42688998 42688998 C T GHR Missense_Mutation p.S48F 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AAE3-01 5 45262400 45262400 C T HCN1 Missense_Mutation p.E766K 0.09 tolerated_low_confidence(0.5) benign(0.052) TCGA-DD-AAE3-01 6 109983861 109983861 T C AK9 Missense_Mutation p.I113V 0.26 tolerated(1) benign(0.028) TCGA-DD-AAE3-01 6 128540097 128540097 C - PTPRK Frame_Shift_Del p.V280Cfs*9 0.24 TCGA-DD-AAE3-01 6 31868471 31868472 - TCCTCA ZBTB12 In_Frame_Ins p.E203_D204dup 0.24 TCGA-DD-AAE3-01 6 33651106 33651106 C T ITPR3 Missense_Mutation p.R1574W 0.37 deleterious(0) probably_damaging(0.991) TCGA-DD-AAE3-01 6 33654876 33654876 G C ITPR3 Missense_Mutation p.E2024Q 0.09 tolerated(0.95) benign(0.015) TCGA-DD-AAE3-01 6 41196730 41196730 T C TREML4 Silent p.A114A 0.77 TCGA-DD-AAE3-01 6 45289589 45289589 T A SUPT3H Missense_Mutation p.K26N 0.17 deleterious_low_confidence(0) benign(0.019) TCGA-DD-AAE3-01 6 47681896 47681896 C T GPR115 Silent p.A305A 0.16 TCGA-DD-AAE3-01 6 73102484 73102484 C A RIMS1 Silent p.G1530G 0.10 TCGA-DD-AAE3-01 6 83905923 83905923 A T RWDD2A Nonsense_Mutation p.K271* 0.42 TCGA-DD-AAE3-01 7 102953331 102953331 T G PMPCB 3'UTR 0.12 TCGA-DD-AAE3-01 7 132990717 132990720 GAAC TTTT EXOC4 Missense_Mutation p.MN186IF 0.10 TCGA-DD-AAE3-01 7 146829531 146829531 C A CNTNAP2 Silent p.L426L 0.25 TCGA-DD-AAE3-01 7 147259228 147259228 A G CNTNAP2 Splice_Site p.X593_splice 0.23 TCGA-DD-AAE3-01 7 1479677 1479694 GCCCTCGGCTCTGCCAGG - MICALL2 In_Frame_Del p.L612_A617del 0.25 TCGA-DD-AAE3-01 7 148984701 148984701 C G ZNF783 3'Flank 0.33 TCGA-DD-AAE3-01 7 149570921 149570922 TC - ATP6V0E2 5'UTR 0.34 TCGA-DD-AAE3-01 7 151842365 151842365 C G KMT2C Missense_Mutation p.A4683P 0.15 probably_damaging(0.999) TCGA-DD-AAE3-01 7 55242460 55242460 A G EGFR Missense_Mutation p.I744V 0.12 deleterious(0.03) benign(0.438) TCGA-DD-AAE3-01 7 87477196 87477196 T C SLC25A40 Missense_Mutation p.I143M 0.18 deleterious(0.01) probably_damaging(1) TCGA-DD-AAE3-01 7 98513492 98513492 C A TRRAP Silent p.L782L 0.14 TCGA-DD-AAE3-01 8 100115280 100115280 T A VPS13B Missense_Mutation p.V171D 0.14 deleterious(0) possibly_damaging(0.804) TCGA-DD-AAE3-01 8 102381133 102381133 A T NACAP1 RNA 0.68 TCGA-DD-AAE3-01 8 121455467 121455467 T C MRPL13 Missense_Mutation p.I37V 0.15 tolerated(0.45) benign(0.002) TCGA-DD-AAE3-01 8 126034356 126034356 A G SQLE 3'UTR 0.27 TCGA-DD-AAE3-01 8 144358389 144358389 G A GLI4 Silent p.P182P 0.15 TCGA-DD-AAE3-01 8 21829398 21829398 A G XPO7 Silent p.E146E 0.09 TCGA-DD-AAE3-01 8 25276942 25276942 T G GNRH1 Missense_Mutation p.K91T 0.13 deleterious(0) possibly_damaging(0.834) TCGA-DD-AAE3-01 8 25276963 25276963 T G GNRH1 Missense_Mutation p.E84A 0.10 deleterious(0) possibly_damaging(0.713) TCGA-DD-AAE3-01 8 42297137 42297137 T C SLC20A2 Silent p.V255V 0.17 TCGA-DD-AAE3-01 8 53540718 53540718 C A RB1CC1 Nonsense_Mutation p.G1504* 0.51 TCGA-DD-AAE3-01 8 53540719 53540719 C A RB1CC1 Silent p.V1503V 0.52 TCGA-DD-AAE3-01 8 92330492 92330492 G T SLC26A7 Nonsense_Mutation p.E176* 0.18 TCGA-DD-AAE3-01 8 96167161 96167161 A G PLEKHF2 3'UTR 0.10 TCGA-DD-AAE3-01 9 100616097 100616097 C T FOXE1 5'UTR 0.34 TCGA-DD-AAE3-01 9 104314807 104314807 A G RNF20 Missense_Mutation p.N558S 0.17 tolerated(0.79) benign(0.292) TCGA-DD-AAE3-01 9 112029803 112029803 T C EPB41L4B Silent p.R161R 0.43 TCGA-DD-AAE3-01 9 139617509 139617509 A G FAM69B Silent p.E193E 0.04 TCGA-DD-AAE3-01 9 2837227 2837227 T C KIAA0020 Missense_Mutation p.N86S 0.21 tolerated(0.44) benign(0.006) TCGA-DD-AAE3-01 9 35557957 35557957 T C RUSC2 Silent p.H1010H 0.30 TCGA-DD-AAE3-01 9 86618017 86618017 A G RMI1 3'UTR 0.25 TCGA-DD-AAE3-01 X 14550455 14550455 A T GLRA2 Missense_Mutation p.T55S 0.48 deleterious_low_confidence(0.05) possibly_damaging(0.882) TCGA-DD-AAE3-01 X 147011692 147011692 A T FMR1 Missense_Mutation p.M187L 0.37 deleterious(0.03) possibly_damaging(0.688) TCGA-DD-AAE3-01 X 1718529 1718529 C T AKAP17A Intron 0.25 TCGA-DD-AAE3-01 X 70352248 70352248 A G MED12 Silent p.V1425V 0.27 TCGA-DD-AAE3-01 X 76776919 76776919 C T ATRX Missense_Mutation p.V2345M 0.47 benign(0.254) TCGA-DD-AAE4-01 10 120938299 120938299 C G PRDX3 Missense_Mutation p.A2P 0.37 deleterious_low_confidence(0) possibly_damaging(0.862) TCGA-DD-AAE4-01 10 134941950 134941950 G A GPR123 Silent p.G206G 0.41 TCGA-DD-AAE4-01 10 35897262 35897262 G C GJD4 Missense_Mutation p.G274A 0.33 tolerated(0.3) benign(0.113) TCGA-DD-AAE4-01 10 52573658 52573658 G A A1CF Missense_Mutation p.P436S 0.34 tolerated(0.09) benign(0.138) TCGA-DD-AAE4-01 10 6521122 6521122 G T PRKCQ Missense_Mutation p.F395L 0.35 tolerated(0.83) benign(0.013) TCGA-DD-AAE4-01 11 105842662 105842662 T A GRIA4 Silent p.V772V 0.37 TCGA-DD-AAE4-01 11 47267056 47267056 G C ACP2 Missense_Mutation p.P173R 0.21 tolerated(0.47) benign(0.248) TCGA-DD-AAE4-01 11 62554934 62554934 C A TMEM179B Missense_Mutation p.L11I 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-DD-AAE4-01 11 77850682 77850682 C T ALG8 5'UTR 0.35 TCGA-DD-AAE4-01 12 133682847 133682847 G A ZNF140 Silent p.P328P 0.50 TCGA-DD-AAE4-01 12 40761590 40761590 G T LRRK2 3'UTR 0.35 TCGA-DD-AAE4-01 12 85695157 85695157 T C ALX1 Silent p.F295F 0.40 TCGA-DD-AAE4-01 12 86230234 86230234 G A RASSF9 5'UTR 0.56 TCGA-DD-AAE4-01 13 103718590 103718590 G T SLC10A2 Missense_Mutation p.P4T 0.39 tolerated_low_confidence(0.74) benign(0.001) TCGA-DD-AAE4-01 13 36242504 36242504 G T NBEA Splice_Site p.X2867_splice 0.51 TCGA-DD-AAE4-01 13 36242505 36242505 G T NBEA Missense_Mutation p.A2867S 0.51 tolerated(0.08) possibly_damaging(0.734) TCGA-DD-AAE4-01 14 105413235 105413235 G C AHNAK2 Silent p.S2851S 0.42 TCGA-DD-AAE4-01 14 24884746 24884746 A G NYNRIN Missense_Mutation p.D1264G 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-DD-AAE4-01 14 39517887 39517887 C T SEC23A Missense_Mutation p.R569K 0.38 deleterious(0.04) benign(0.037) TCGA-DD-AAE4-01 14 39716435 39716435 T A MIA2 Silent p.A219A 0.42 TCGA-DD-AAE4-01 14 64954457 64954457 G A ZBTB25 Silent p.D164D 0.16 TCGA-DD-AAE4-01 14 96010306 96010306 G T GLRX5 Missense_Mutation p.W106C 0.03 deleterious(0) probably_damaging(1) TCGA-DD-AAE4-01 15 64204312 64204312 A T DAPK2 Missense_Mutation p.W315R 0.32 deleterious(0) possibly_damaging(0.62) TCGA-DD-AAE4-01 15 69320838 69320838 G T NOX5 Intron 0.21 TCGA-DD-AAE4-01 16 16248764 16248764 T G ABCC6 Missense_Mutation p.H1336P 0.28 deleterious(0) possibly_damaging(0.752) TCGA-DD-AAE4-01 16 16255355 16255355 C A ABCC6 Silent p.V1191V 0.49 TCGA-DD-AAE4-01 16 16255356 16255356 A C ABCC6 Missense_Mutation p.V1191G 0.49 deleterious(0) probably_damaging(0.939) TCGA-DD-AAE4-01 16 57790767 57790767 T G KATNB1 Missense_Mutation p.I626S 0.27 deleterious(0) possibly_damaging(0.773) TCGA-DD-AAE4-01 16 70954810 70954810 G A HYDIN Missense_Mutation p.A2490V 0.39 benign(0.001) TCGA-DD-AAE4-01 17 37792162 37792162 C A PPP1R1B 3'UTR 0.45 TCGA-DD-AAE4-01 17 46692119 46692119 T G HOXB8 5'UTR 0.32 TCGA-DD-AAE4-01 17 56344913 56344913 G A LPO Missense_Mutation p.G633S 0.39 tolerated(0.12) probably_damaging(1) TCGA-DD-AAE4-01 18 73000060 73000060 C T TSHZ1 Silent p.L855L 0.31 TCGA-DD-AAE4-01 18 74154504 74154504 C A ZNF516 Missense_Mutation p.E169D 0.42 tolerated(0.33) benign(0.008) TCGA-DD-AAE4-01 19 1080975 1080975 G A HMHA1 Missense_Mutation p.R717H 0.23 tolerated(0.13) benign(0.055) TCGA-DD-AAE4-01 19 15291624 15291624 A C NOTCH3 Missense_Mutation p.C1004G 0.42 deleterious(0) probably_damaging(1) TCGA-DD-AAE4-01 19 34263953 34263953 T C CHST8 Silent p.F420F 0.39 TCGA-DD-AAE4-01 19 35550386 35550386 T A HPN Intron 0.27 TCGA-DD-AAE4-01 19 36884752 36884752 G T ZFP82 Missense_Mutation p.H164N 0.31 tolerated(0.07) benign(0.002) TCGA-DD-AAE4-01 19 39421215 39421215 T C SARS2 Silent p.A54A 0.36 TCGA-DD-AAE4-01 19 39867144 39867144 C T SAMD4B Silent p.Y325Y 0.37 TCGA-DD-AAE4-01 19 46388496 46388496 C A IRF2BP1 Silent p.L179L 0.44 TCGA-DD-AAE4-01 19 53886240 53886240 G T ZNF525 3'UTR 0.09 TCGA-DD-AAE4-01 1 11985938 11985938 C G KIAA2013 Silent p.A119A 0.36 TCGA-DD-AAE4-01 1 149398927 149398927 T A HIST2H3PS2 3'Flank 0.36 TCGA-DD-AAE4-01 1 154548297 154548297 T C CHRNB2 Silent p.F466F 0.26 TCGA-DD-AAE4-01 1 158154057 158154058 - A CD1D 3'UTR 0.18 TCGA-DD-AAE4-01 1 16579610 16579610 C T FBXO42 Missense_Mutation p.G301E 0.06 deleterious(0) probably_damaging(0.999) TCGA-DD-AAE4-01 1 172579454 172579454 A G SUCO 3'UTR 0.55 TCGA-DD-AAE4-01 1 178310662 178310662 A G RASAL2 Intron 0.31 TCGA-DD-AAE4-01 1 19612450 19612450 C A AKR7A3 Missense_Mutation p.A147S 0.38 tolerated(1) benign(0.051) TCGA-DD-AAE4-01 1 20879214 20879214 A C FAM43B 5'UTR 0.33 TCGA-DD-AAE4-01 1 240371477 240371477 C T FMN2 Missense_Mutation p.P1122L 0.33 unknown(0) TCGA-DD-AAE4-01 1 241798135 241798135 C T CHML Missense_Mutation p.D312N 0.40 deleterious(0.03) benign(0.007) TCGA-DD-AAE4-01 1 27878204 27878206 ACT - AHDC1 In_Frame_Del p.S141del 0.28 TCGA-DD-AAE4-01 1 7725035 7725036 GC - CAMTA1 Frame_Shift_Del p.R811Gfs*14 0.22 TCGA-DD-AAE4-01 20 23066284 23066284 G T CD93 Missense_Mutation p.F182L 0.38 deleterious(0) probably_damaging(0.998) TCGA-DD-AAE4-01 20 30525234 30525234 C A TTLL9 Missense_Mutation p.T347K 0.47 deleterious(0) possibly_damaging(0.772) TCGA-DD-AAE4-01 20 37378813 37378813 C A ACTR5 Nonsense_Mutation p.S179* 0.40 TCGA-DD-AAE4-01 21 33726360 33726360 C T URB1 Silent p.E766E 0.03 TCGA-DD-AAE4-01 2 102018902 102018902 T C RFX8 Missense_Mutation p.N414S 0.06 deleterious_low_confidence(0.04) benign(0.392) TCGA-DD-AAE4-01 2 131785570 131785570 C T ARHGEF4 Silent p.S160S 0.63 TCGA-DD-AAE4-01 2 232320222 232320222 C A NCL Missense_Mutation p.G649V 0.37 possibly_damaging(0.54) TCGA-DD-AAE4-01 2 234959400 234959405 GAGAGA CACT SPP2 5'UTR 0.44 TCGA-DD-AAE4-01 2 26597999 26597999 T G EPT1 Missense_Mutation p.F222C 0.41 deleterious(0.01) probably_damaging(1) TCGA-DD-AAE4-01 2 54163923 54163923 T A PSME4 Missense_Mutation p.Q246L 0.39 deleterious(0.05) benign(0.09) TCGA-DD-AAE4-01 2 5836458 5836458 C A SOX11 3'UTR 0.37 TCGA-DD-AAE4-01 3 14199628 14199628 G A XPC Silent p.Y585Y 0.39 TCGA-DD-AAE4-01 3 38354541 38354541 G A SLC22A14 Silent p.E332E 0.37 TCGA-DD-AAE4-01 3 42917206 42917206 G T CYP8B1 Missense_Mutation p.L35M 0.72 deleterious(0) probably_damaging(1) TCGA-DD-AAE4-01 3 47882619 47882619 T G DHX30 Missense_Mutation p.F207V 0.38 tolerated_low_confidence(0.31) benign(0.01) TCGA-DD-AAE4-01 3 52535661 52535661 G C STAB1 Missense_Mutation p.V75L 0.30 deleterious(0.04) benign(0.071) TCGA-DD-AAE4-01 4 15517558 15517559 - G CC2D2A Frame_Shift_Ins p.V318Gfs*30 0.28 TCGA-DD-AAE4-01 4 155411569 155411569 G A DCHS2 Silent p.A313A 0.40 TCGA-DD-AAE4-01 4 3446146 3446146 G A HGFAC Nonsense_Mutation p.W236* 0.36 TCGA-DD-AAE4-01 4 55573355 55573355 A T KIT Silent p.A339A 0.41 TCGA-DD-AAE4-01 5 132086844 132086844 T A SEPT8 3'UTR 0.40 TCGA-DD-AAE4-01 5 140222700 140222700 C T PCDHA8 Silent p.D598D 0.35 TCGA-DD-AAE4-01 5 140590934 140590934 C A PCDHB12 3'UTR 0.37 TCGA-DD-AAE4-01 5 141036195 141036195 C T ARAP3 Missense_Mutation p.R1222H 0.33 tolerated(0.08) probably_damaging(0.972) TCGA-DD-AAE4-01 5 37224832 37224832 G T C5orf42 Missense_Mutation p.L768I 0.11 deleterious(0) probably_damaging(0.955) TCGA-DD-AAE4-01 5 39074458 39074458 G A RICTOR Missense_Mutation p.R8C 0.43 deleterious(0) probably_damaging(0.997) TCGA-DD-AAE4-01 6 128388773 128388773 G C PTPRK Missense_Mutation p.A683G 0.34 tolerated(0.35) benign(0.199) TCGA-DD-AAE4-01 6 154727536 154727536 C A CNKSR3 Silent p.P540P 0.31 TCGA-DD-AAE4-01 6 29408146 29408146 C T OR10C1 Silent p.A118A 0.46 TCGA-DD-AAE4-01 6 81053702 81053702 A T BCKDHB 3'UTR 0.40 TCGA-DD-AAE4-01 7 158734820 158734820 C T WDR60 Nonsense_Mutation p.Q995* 0.68 TCGA-DD-AAE4-01 7 77558460 77558460 G T PHTF2 Missense_Mutation p.R351L 0.41 tolerated(0.15) probably_damaging(0.938) TCGA-DD-AAE4-01 8 113348970 113348970 A G CSMD3 Silent p.F2310F 0.39 TCGA-DD-AAE4-01 8 117954908 117954908 A T AARD Missense_Mutation p.S146C 0.07 deleterious(0.01) probably_damaging(0.938) TCGA-DD-AAE4-01 8 24339683 24339683 C T ADAM7 Missense_Mutation p.T245M 0.17 deleterious(0.01) probably_damaging(0.976) TCGA-DD-AAE4-01 8 68536486 68536486 A T CPA6 Silent p.G39G 0.32 TCGA-DD-AAE4-01 9 140074767 140074767 G C ANAPC2 Missense_Mutation p.Q586E 0.35 tolerated(0.36) benign(0.004) TCGA-DD-AAE4-01 9 77362825 77362825 T C TRPM6 Missense_Mutation p.K1688R 0.40 tolerated(1) benign(0.001) TCGA-DD-AAE4-01 X 118750547 118750547 C G SEPT6 3'Flank 0.33 TCGA-DD-AAE4-01 X 152090763 152090763 C T ZNF185 Missense_Mutation p.P234S 0.42 tolerated(0.09) benign(0.267) TCGA-DD-AAE4-01 X 32235137 32235137 C A DMD Missense_Mutation p.D2112Y 0.41 probably_damaging(0.934) TCGA-DD-AAE4-01 X 41428980 41428980 T G CASK Missense_Mutation p.N508T 0.02 tolerated(0.33) benign(0.076) TCGA-DD-AAE4-01 X 64722582 64722582 T A ZC3H12B Silent p.T668T 0.09 TCGA-DD-AAE4-01 X 64722584 64722584 G A ZC3H12B Missense_Mutation p.G669E 0.09 deleterious(0.03) benign(0.128) TCGA-DD-AAE4-01 X 9709456 9709456 A C GPR143 Nonsense_Mutation p.Y269* 0.37 TCGA-DD-AAE4-01 X 99957070 99957070 A G SYTL4 5'UTR 0.51 TCGA-DD-AAE6-01 10 103239157 103239157 C G BTRC Missense_Mutation p.N89K 0.20 deleterious_low_confidence(0.01) benign(0.021) TCGA-DD-AAE6-01 10 117075138 117075138 T A ATRNL1 Missense_Mutation p.S977T 0.49 tolerated(0.18) possibly_damaging(0.578) TCGA-DD-AAE6-01 10 133959058 133959058 C T JAKMIP3 Missense_Mutation p.R575W 0.46 deleterious(0) probably_damaging(0.985) TCGA-DD-AAE6-01 11 18636133 18636133 A T SPTY2D1 Missense_Mutation p.L563Q 0.37 tolerated(0.14) possibly_damaging(0.852) TCGA-DD-AAE6-01 11 47436224 47436224 G A SLC39A13 Intron 0.26 TCGA-DD-AAE6-01 11 50003316 50003316 T C OR4C12 Missense_Mutation p.H241R 0.47 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DD-AAE6-01 11 5153870 5153870 C A OR52A5 Translation_Start_Site p.M1? 0.25 deleterious(0) possibly_damaging(0.578) TCGA-DD-AAE6-01 11 56086555 56086555 A T OR8K3 Missense_Mutation p.Y258F 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.793) TCGA-DD-AAE6-01 11 57427365 57427365 G A CLP1 Silent p.V139V 0.42 TCGA-DD-AAE6-01 11 62012145 62012145 A C SCGB1D2 Missense_Mutation p.K83Q 0.34 tolerated(0.12) possibly_damaging(0.507) TCGA-DD-AAE6-01 11 62563804 62563804 C A NXF1 Nonsense_Mutation p.E434* 0.49 TCGA-DD-AAE6-01 11 70333713 70333713 G A SHANK2 Silent p.P896P 0.41 TCGA-DD-AAE6-01 11 73768566 73768566 C T C2CD3 Missense_Mutation p.V1659I 0.92 tolerated(0.07) benign(0.018) TCGA-DD-AAE6-01 12 119909909 119909909 G A CCDC60 Missense_Mutation p.R94K 0.38 tolerated(0.1) benign(0.015) TCGA-DD-AAE6-01 12 125900204 125900204 C T TMEM132B Missense_Mutation p.R358C 0.34 deleterious(0.05) possibly_damaging(0.526) TCGA-DD-AAE6-01 12 27872748 27872748 A G MRPS35 Missense_Mutation p.N110S 0.37 deleterious(0) possibly_damaging(0.666) TCGA-DD-AAE6-01 12 3149708 3149708 G T TEAD4 3'UTR 0.43 TCGA-DD-AAE6-01 12 52779057 52779057 G C KRT84 Missense_Mutation p.L105V 0.45 tolerated(0.28) probably_damaging(0.952) TCGA-DD-AAE6-01 12 85409681 85409681 G T TSPAN19 Missense_Mutation p.L222I 0.11 deleterious(0.03) possibly_damaging(0.613) TCGA-DD-AAE6-01 12 88974207 88974207 C T KITLG 5'UTR 0.44 TCGA-DD-AAE6-01 12 98921777 98921777 T G TMPO Silent p.P131P 0.40 TCGA-DD-AAE6-01 13 37402174 37402174 G A RFXAP 3'UTR 0.33 TCGA-DD-AAE6-01 14 102028218 102028218 G A DIO3 Missense_Mutation p.A129T 0.83 tolerated(0.11) benign(0.329) TCGA-DD-AAE6-01 14 105180814 105180814 G T INF2 Silent p.L1105L 0.07 TCGA-DD-AAE6-01 14 21943061 21943061 C T RAB2B Missense_Mutation p.D51N 0.07 tolerated(0.44) benign(0.008) TCGA-DD-AAE6-01 14 23495499 23495499 G A PSMB5 Silent p.V197V 0.12 TCGA-DD-AAE6-01 14 75348623 75348623 C A DLST 5'UTR 0.91 TCGA-DD-AAE6-01 14 91338567 91338567 C A RPS6KA5 Nonsense_Mutation p.E754* 0.90 TCGA-DD-AAE6-01 15 78778141 78778141 C T IREB2 Silent p.Y556Y 0.17 TCGA-DD-AAE6-01 15 90210270 90210270 G A PLIN1 Missense_Mutation p.P369L 0.38 deleterious(0.01) possibly_damaging(0.719) TCGA-DD-AAE6-01 16 22448892 22448892 C T RRN3P3 RNA 0.17 TCGA-DD-AAE6-01 16 22448893 22448893 G C RRN3P3 RNA 0.17 TCGA-DD-AAE6-01 16 27802654 27802654 G A GSG1L 3'UTR 0.17 TCGA-DD-AAE6-01 16 28507171 28507171 C A APOBR Missense_Mutation p.A270E 0.40 tolerated(0.28) benign(0.13) TCGA-DD-AAE6-01 16 29816289 29816289 G T KIF22 Missense_Mutation p.G611V 0.51 deleterious(0) probably_damaging(1) TCGA-DD-AAE6-01 16 30097463 30097463 G A TBX6 3'UTR 0.12 TCGA-DD-AAE6-01 16 396164 396164 C A AXIN1 Nonsense_Mutation p.E288* 0.97 TCGA-DD-AAE6-01 16 50354273 50354273 C A BRD7 Nonsense_Mutation p.E549* 1.00 TCGA-DD-AAE6-01 17 27049731 27049731 C T RPL23A Intron 0.21 TCGA-DD-AAE6-01 17 33513441 33513441 G A UNC45B Missense_Mutation p.V887M 0.53 tolerated(0.94) benign(0.049) TCGA-DD-AAE6-01 17 54543824 54543824 A T ANKFN1 Silent p.S558S 0.48 TCGA-DD-AAE6-01 17 73910864 73910864 G A FBF1 Silent p.D911D 0.43 TCGA-DD-AAE6-01 17 7578502 7578503 - CAGGG TP53 Frame_Shift_Ins p.V143Afs*29 0.65 TCGA-DD-AAE6-01 18 40850112 40850112 T C SYT4 3'UTR 0.60 TCGA-DD-AAE6-01 18 46889584 46889584 A C DYM Silent p.L147L 0.04 TCGA-DD-AAE6-01 19 1469147 1469167 GGAGCCGGGCCCCAGGGGCCG - APC2 In_Frame_Del p.E1950_R1956del 0.47 TCGA-DD-AAE6-01 19 16686742 16686742 C T MED26 3'UTR 0.20 TCGA-DD-AAE6-01 19 17393777 17393777 G A ANKLE1 Silent p.G142G 0.14 TCGA-DD-AAE6-01 19 47425012 47425012 G A ARHGAP35 Missense_Mutation p.S1027N 0.43 tolerated(0.52) benign(0.003) TCGA-DD-AAE6-01 19 57931108 57931108 C T AC003002.6 Missense_Mutation p.A95V 0.16 tolerated(0.08) benign(0.16) TCGA-DD-AAE6-01 19 58846306 58846306 G A ZSCAN22 Silent p.E46E 0.42 TCGA-DD-AAE6-01 1 109957891 109957891 A G PSMA5 Missense_Mutation p.I64T 0.45 deleterious(0.01) benign(0.069) TCGA-DD-AAE6-01 1 11128719 11128719 G T EXOSC10 Missense_Mutation p.Q845K 0.54 deleterious_low_confidence(0.01) benign(0.358) TCGA-DD-AAE6-01 1 113245243 113245243 T C RHOC Missense_Mutation p.N117S 0.50 tolerated(0.74) benign(0.186) TCGA-DD-AAE6-01 1 12677183 12677183 C T DHRS3 Silent p.E57E 0.22 TCGA-DD-AAE6-01 1 1372593 1372593 C T VWA1 Silent p.A120A 0.58 TCGA-DD-AAE6-01 1 152659435 152659435 C T LCE2B Missense_Mutation p.P39L 0.09 tolerated_low_confidence(0.35) unknown(0) TCGA-DD-AAE6-01 1 158621155 158621155 A T SPTA1 Splice_Site p.X1159_splice 0.16 TCGA-DD-AAE6-01 1 159283710 159283710 G A OR10J3 Missense_Mutation p.T247I 0.15 tolerated(0.12) benign(0.248) TCGA-DD-AAE6-01 1 168056873 168056873 G T GPR161 Missense_Mutation p.P445H 0.41 tolerated_low_confidence(0.34) benign(0.067) TCGA-DD-AAE6-01 1 175348809 175348809 C T TNR Nonsense_Mutation p.W614* 0.15 TCGA-DD-AAE6-01 1 179561931 179561931 C T TDRD5 Missense_Mutation p.P61S 0.09 deleterious(0) probably_damaging(0.989) TCGA-DD-AAE6-01 1 186024781 186024781 C - HMCN1 Frame_Shift_Del p.D2373Efs*6 0.27 TCGA-DD-AAE6-01 1 21016719 21016719 C T KIF17 Missense_Mutation p.R448K 0.57 tolerated(1) benign(0) TCGA-DD-AAE6-01 1 214585026 214585026 C T PTPN14 Splice_Site p.X170_splice 0.13 TCGA-DD-AAE6-01 1 227076565 227076566 - C PSEN2 Frame_Shift_Ins p.T203Hfs*61 0.16 TCGA-DD-AAE6-01 1 247769166 247769166 T G OR2G3 Silent p.T93T 0.28 TCGA-DD-AAE6-01 1 248756758 248756758 G A OR2T10 Silent p.Y104Y 0.12 TCGA-DD-AAE6-01 1 32084909 32084909 A G HCRTR1 Missense_Mutation p.Y39C 0.29 deleterious(0) probably_damaging(0.976) TCGA-DD-AAE6-01 1 3662702 3662702 G C TP73-AS1 RNA 0.14 TCGA-DD-AAE6-01 1 50886996 50886996 C T DMRTA2 Silent p.A71A 0.48 TCGA-DD-AAE6-01 1 54618578 54618578 C G CDCP2 Silent p.G6G 0.17 TCGA-DD-AAE6-01 1 60377391 60377391 G A CYP2J2 Silent p.I191I 0.15 TCGA-DD-AAE6-01 1 85116058 85116058 T A SSX2IP Missense_Mutation p.I553L 0.39 tolerated(0.05) benign(0.001) TCGA-DD-AAE6-01 20 35068157 35068157 G A DLGAP4 Silent p.R414R 0.16 TCGA-DD-AAE6-01 20 44672561 44672561 C T SLC12A5 Silent p.V484V 0.07 TCGA-DD-AAE6-01 20 57429421 57429421 C T GNAS Silent p.A367A 0.32 TCGA-DD-AAE6-01 21 10933874 10933874 C T TPTE Silent p.A335A 0.15 TCGA-DD-AAE6-01 21 43802304 43802304 T G TMPRSS3 Silent p.L274L 0.43 TCGA-DD-AAE6-01 21 45759084 45759084 C T C21orf2 5'UTR 0.47 TCGA-DD-AAE6-01 21 45949775 45949775 G A TSPEAR Silent p.S232S 0.32 TCGA-DD-AAE6-01 21 47575482 47575482 G C FTCD 5'Flank 0.41 TCGA-DD-AAE6-01 22 24649298 24649298 C T POM121L9P RNA 0.16 TCGA-DD-AAE6-01 22 37325772 37325772 C T CSF2RB Missense_Mutation p.T214I 0.24 deleterious(0) possibly_damaging(0.853) TCGA-DD-AAE6-01 22 39994193 39994193 A G CACNA1I Missense_Mutation p.N92D 0.67 deleterious(0) benign(0.047) TCGA-DD-AAE6-01 2 120834878 120834878 A G EPB41L5 Missense_Mutation p.M234V 0.65 deleterious(0) possibly_damaging(0.823) TCGA-DD-AAE6-01 2 130897517 130897517 G A CCDC74B Silent p.D318D 0.23 TCGA-DD-AAE6-01 2 145156639 145156639 G A ZEB2 Silent p.S705S 0.32 TCGA-DD-AAE6-01 2 219249062 219249062 C T SLC11A1 Nonsense_Mutation p.Q83* 0.11 TCGA-DD-AAE6-01 2 222347320 222347320 C T EPHA4 Missense_Mutation p.R357H 0.24 deleterious(0) probably_damaging(0.991) TCGA-DD-AAE6-01 2 222436897 222436897 C T EPHA4 Silent p.R24R 0.39 TCGA-DD-AAE6-01 2 242092994 242092994 G C PPP1R7 Missense_Mutation p.E52D 0.42 tolerated(0.27) unknown(0) TCGA-DD-AAE6-01 2 33764196 33764196 G A RASGRP3 Silent p.V399V 0.47 TCGA-DD-AAE6-01 2 74776519 74776519 C T LOXL3 Silent p.K223K 0.13 TCGA-DD-AAE6-01 3 112324389 112324389 C G CCDC80 Missense_Mutation p.G910R 0.21 deleterious(0) probably_damaging(1) TCGA-DD-AAE6-01 3 118867141 118867141 G A C3orf30 Missense_Mutation p.E505K 0.35 deleterious(0) possibly_damaging(0.801) TCGA-DD-AAE6-01 3 119263423 119263423 A G CD80 Missense_Mutation p.L131P 0.37 deleterious(0.01) probably_damaging(0.981) TCGA-DD-AAE6-01 3 4354904 4354904 C T SETMAR Missense_Mutation p.P160L 0.36 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-DD-AAE6-01 3 50363479 50363479 G A TUSC2 3'UTR 0.19 TCGA-DD-AAE6-01 4 26719629 26719629 A G TBC1D19 Silent p.S343S 0.38 TCGA-DD-AAE6-01 4 90856478 90856478 A G MMRN1 Silent p.L549L 0.97 TCGA-DD-AAE6-01 5 1219041 1219041 C G SLC6A19 Silent p.A399A 0.10 TCGA-DD-AAE6-01 5 134121267 134121267 C T DDX46 Silent p.I485I 0.20 TCGA-DD-AAE6-01 5 140308948 140308948 G T PCDHAC1 Intron 0.43 TCGA-DD-AAE6-01 5 140802419 140802419 C T PCDHGA11 Missense_Mutation p.P542L 0.21 deleterious_low_confidence(0) possibly_damaging(0.495) TCGA-DD-AAE6-01 5 148408005 148408005 C A SH3TC2 Missense_Mutation p.E430D 0.46 tolerated(0.16) benign(0.102) TCGA-DD-AAE6-01 5 68715921 68715921 G C MARVELD2 Missense_Mutation p.G237R 0.50 deleterious(0.04) probably_damaging(0.977) TCGA-DD-AAE6-01 5 74646733 74646733 A T HMGCR Missense_Mutation p.R300S 0.18 tolerated(0.38) benign(0.138) TCGA-DD-AAE6-01 6 157222615 157222615 C T ARID1B Nonsense_Mutation p.Q628* 0.30 TCGA-DD-AAE6-01 6 158490577 158490577 G T SYNJ2 Missense_Mutation p.K604N 0.56 deleterious(0.01) benign(0.139) TCGA-DD-AAE6-01 6 3153968 3153968 C T TUBB2A 3'UTR 0.35 TCGA-DD-AAE6-01 6 31604316 31604316 T C PRRC2A Silent p.D1955D 0.19 TCGA-DD-AAE6-01 7 100454563 100454563 G A SLC12A9 Silent p.L174L 0.19 TCGA-DD-AAE6-01 7 12383827 12383827 C T VWDE Missense_Mutation p.D1358N 0.19 tolerated(0.05) benign(0.013) TCGA-DD-AAE6-01 7 16644410 16644410 T A ANKMY2 Missense_Mutation p.D316V 0.39 deleterious(0.03) benign(0.21) TCGA-DD-AAE6-01 7 24718945 24718945 A G MPP6 Missense_Mutation p.N437S 0.48 tolerated(0.33) possibly_damaging(0.557) TCGA-DD-AAE6-01 7 4901350 4901350 A G PAPOLB Missense_Mutation p.V30A 0.22 tolerated(0.74) benign(0.001) TCGA-DD-AAE6-01 7 83095918 83095918 C A SEMA3E Splice_Site p.X113_splice 0.42 TCGA-DD-AAE6-01 8 105507559 105507559 C A LRP12 Intron 0.16 TCGA-DD-AAE6-01 8 144407546 144407546 G T TOP1MT Missense_Mutation p.T214K 0.06 tolerated(0.27) benign(0.002) TCGA-DD-AAE6-01 8 145724197 145724197 G A PPP1R16A Missense_Mutation p.E102K 0.14 deleterious(0) probably_damaging(0.99) TCGA-DD-AAE6-01 8 17043874 17043874 A G ZDHHC2 Silent p.A64A 0.92 TCGA-DD-AAE6-01 8 41798614 41798614 G A KAT6A Nonsense_Mutation p.Q929* 0.41 TCGA-DD-AAE6-01 9 119115123 119115123 A G PAPPA Missense_Mutation p.K1368R 0.23 deleterious(0.03) possibly_damaging(0.621) TCGA-DD-AAE6-01 9 138660719 138660719 C T KCNT1 Silent p.A482A 0.32 TCGA-DD-AAE6-01 9 139907958 139907958 C T ABCA2 Missense_Mutation p.R1502H 0.56 tolerated(0.15) probably_damaging(0.921) TCGA-DD-AAE6-01 9 37441538 37441538 A G ZBTB5 Silent p.P337P 0.65 TCGA-DD-AAE6-01 X 111195372 111195372 T A TRPC5 Missense_Mutation p.S93C 0.46 deleterious(0.02) benign(0.022) TCGA-DD-AAE7-01 10 101542544 101542544 A C ABCC2 5'UTR 0.21 TCGA-DD-AAE7-01 10 102040753 102040753 T C BLOC1S2 Missense_Mutation p.Y77C 0.06 deleterious(0) probably_damaging(0.998) TCGA-DD-AAE7-01 10 120829152 120829152 A T EIF3A Silent p.A252A 0.06 TCGA-DD-AAE7-01 10 122626230 122626230 A G WDR11 Missense_Mutation p.I382V 0.29 tolerated(0.32) benign(0.001) TCGA-DD-AAE7-01 10 22605352 22605352 G T COMMD3 Missense_Mutation p.E2D 0.36 deleterious(0) probably_damaging(0.97) TCGA-DD-AAE7-01 10 22605353 22605353 C T COMMD3 Missense_Mutation p.L3F 0.37 tolerated(0.06) benign(0.03) TCGA-DD-AAE7-01 10 45869875 45869875 G A ALOX5 Missense_Mutation p.A50T 0.03 tolerated(0.08) benign(0.026) TCGA-DD-AAE7-01 10 60996312 60996312 A G PHYHIPL Missense_Mutation p.S125G 0.34 deleterious(0) probably_damaging(0.991) TCGA-DD-AAE7-01 10 95557391 95557391 A G LGI1 Missense_Mutation p.Y502C 0.19 deleterious(0) probably_damaging(0.992) TCGA-DD-AAE7-01 11 101918604 101918604 T A C11orf70 Missense_Mutation p.Y57N 0.23 deleterious(0) probably_damaging(0.926) TCGA-DD-AAE7-01 11 105795386 105795386 G T GRIA4 Missense_Mutation p.D580Y 0.07 deleterious(0) probably_damaging(0.976) TCGA-DD-AAE7-01 11 10823243 10823243 G T EIF4G2 Silent p.R460R 0.19 TCGA-DD-AAE7-01 11 114550401 114550401 G T NXPE2 Missense_Mutation p.A17S 0.33 tolerated(0.32) benign(0.118) TCGA-DD-AAE7-01 11 121323146 121323146 C T SORL1 Missense_Mutation p.H36Y 0.24 tolerated_low_confidence(0.09) benign(0) TCGA-DD-AAE7-01 11 124190043 124190043 C G OR8D2 Missense_Mutation p.L17F 0.27 deleterious(0.01) benign(0.028) TCGA-DD-AAE7-01 11 124618302 124618302 C G VSIG2 Missense_Mutation p.G279R 0.45 tolerated(0.11) benign(0.015) TCGA-DD-AAE7-01 11 18333536 18333536 A T HPS5 Silent p.A48A 0.27 TCGA-DD-AAE7-01 11 18723589 18723589 T G TMEM86A 3'UTR 0.39 TCGA-DD-AAE7-01 11 22247597 22247597 G - ANO5 Frame_Shift_Del 0.17 TCGA-DD-AAE7-01 11 36472812 36472812 G A PRR5L Silent p.L213L 0.25 TCGA-DD-AAE7-01 11 45307590 45307590 C A SYT13 Missense_Mutation p.G57W 0.29 tolerated(0.32) possibly_damaging(0.523) TCGA-DD-AAE7-01 11 47594391 47594391 A C KBTBD4 3'UTR 0.24 TCGA-DD-AAE7-01 11 57509692 57509692 A C C11orf31 3'UTR 0.07 TCGA-DD-AAE7-01 11 59282778 59282778 C T OR4D9 Silent p.H131H 0.25 TCGA-DD-AAE7-01 11 62678251 62678251 C T CHRM1 Missense_Mutation p.A108T 0.31 deleterious(0.01) possibly_damaging(0.74) TCGA-DD-AAE7-01 11 66357772 66357772 T C CCDC87 3'UTR 0.15 TCGA-DD-AAE7-01 11 66367052 66367052 G T CCS Missense_Mutation p.G125W 0.27 deleterious(0) probably_damaging(1) TCGA-DD-AAE7-01 11 92714649 92714649 T A MTNR1B Missense_Mutation p.L87Q 0.34 deleterious(0) probably_damaging(0.995) TCGA-DD-AAE7-01 11 93104432 93104432 C T CCDC67 Nonsense_Mutation p.Q259* 0.31 TCGA-DD-AAE7-01 11 9435885 9435885 T G IPO7 Missense_Mutation p.L188R 0.29 deleterious(0) probably_damaging(0.987) TCGA-DD-AAE7-01 11 95724767 95724767 T C MAML2 Missense_Mutation p.M754V 0.07 unknown(0) TCGA-DD-AAE7-01 12 10131563 10131563 A T CLEC12A Splice_Site p.X41_splice 0.21 TCGA-DD-AAE7-01 12 12332891 12332891 T A LRP6 Silent p.G466G 0.20 TCGA-DD-AAE7-01 12 123340546 123340546 A G HIP1R Missense_Mutation p.Q383R 0.15 deleterious(0.02) possibly_damaging(0.756) TCGA-DD-AAE7-01 12 18576952 18576952 A G PIK3C2G Missense_Mutation p.Q787R 0.25 tolerated(0.8) benign(0.074) TCGA-DD-AAE7-01 12 27126820 27126820 A G TM7SF3 3'UTR 0.37 TCGA-DD-AAE7-01 12 330614 330614 A G SLC6A13 Silent p.A538A 0.12 TCGA-DD-AAE7-01 12 48174170 48174170 G A SLC48A1 3'UTR 0.20 TCGA-DD-AAE7-01 12 5020868 5020868 G T KCNA1 Silent p.V108V 0.21 TCGA-DD-AAE7-01 12 54798981 54798981 G T ITGA5 Silent p.P398P 0.19 TCGA-DD-AAE7-01 12 54799001 54799001 A C ITGA5 Missense_Mutation p.F392V 0.17 deleterious(0) probably_damaging(0.999) TCGA-DD-AAE7-01 12 56346937 56346937 A G DGKA Missense_Mutation p.T686A 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-DD-AAE7-01 12 56575848 56575848 G T SMARCC2 Silent p.I216I 0.29 TCGA-DD-AAE7-01 12 57110811 57110811 C T NACA Intron 0.31 TCGA-DD-AAE7-01 12 70928714 70928714 G T PTPRB Missense_Mutation p.P2035T 0.26 deleterious(0) probably_damaging(1) TCGA-DD-AAE7-01 12 85255282 85255282 G C SLC6A15 3'UTR 0.28 TCGA-DD-AAE7-01 12 85279833 85279833 G T SLC6A15 Missense_Mutation p.P102T 0.33 deleterious(0.01) probably_damaging(1) TCGA-DD-AAE7-01 12 86230041 86230041 T C RASSF9 5'UTR 0.18 TCGA-DD-AAE7-01 12 9262919 9262919 T C A2M Silent p.V165V 0.38 TCGA-DD-AAE7-01 13 20056675 20056675 T C TPTE2 Silent p.R44R 0.28 TCGA-DD-AAE7-01 13 20067639 20067639 G A TPTE2 Missense_Mutation p.P5L 0.31 deleterious_low_confidence(0.01) benign(0.188) TCGA-DD-AAE7-01 13 23909684 23909684 C A SACS Missense_Mutation p.R2777S 0.26 probably_damaging(0.992) TCGA-DD-AAE7-01 13 34398092 34398092 A G RFC3 Silent p.A88A 0.03 TCGA-DD-AAE7-01 13 43918692 43918692 T C ENOX1 Missense_Mutation p.T340A 0.31 tolerated(0.84) benign(0) TCGA-DD-AAE7-01 13 46067517 46067517 A T COG3 Missense_Mutation p.D408V 0.35 deleterious(0) probably_damaging(0.974) TCGA-DD-AAE7-01 13 46104830 46104830 A G COG3 Missense_Mutation p.Q791R 0.07 tolerated(0.16) benign(0.019) TCGA-DD-AAE7-01 13 92003357 92003357 T C MIR17HG RNA 0.27 TCGA-DD-AAE7-01 14 105180664 105180664 C A INF2 Silent p.P1055P 0.42 TCGA-DD-AAE7-01 14 24617276 24617276 G A RNF31 Nonsense_Mutation p.W95* 0.33 TCGA-DD-AAE7-01 14 25103382 25103382 G A GZMB 5'UTR 0.27 TCGA-DD-AAE7-01 14 50090170 50090170 T G MGAT2 3'UTR 0.27 TCGA-DD-AAE7-01 14 67291253 67291253 C - GPHN Frame_Shift_Del p.T88Kfs*16 0.17 TCGA-DD-AAE7-01 14 68046545 68046545 C A PLEKHH1 Missense_Mutation p.D1045E 0.34 deleterious(0) possibly_damaging(0.733) TCGA-DD-AAE7-01 14 94752462 94752462 T G SERPINA10 Missense_Mutation p.N376H 0.29 tolerated(0.48) benign(0.086) TCGA-DD-AAE7-01 15 24923532 24923532 T A NPAP1 Missense_Mutation p.F840I 0.31 tolerated(0.4) benign(0.133) TCGA-DD-AAE7-01 15 31619847 31619852 GCCCGG - KLF13 In_Frame_Del p.E144_G146delinsD 0.19 TCGA-DD-AAE7-01 15 41136861 41136861 C T SPINT1 Missense_Mutation p.P37S 0.33 tolerated(0.68) benign(0.126) TCGA-DD-AAE7-01 15 44060746 44060746 G T PDIA3 Missense_Mutation p.R363I 0.38 deleterious(0.02) benign(0.232) TCGA-DD-AAE7-01 15 60803529 60803529 A G RORA Missense_Mutation p.I272T 0.31 tolerated(0.15) benign(0.032) TCGA-DD-AAE7-01 15 65962168 65962168 G A DENND4A Missense_Mutation p.S1578F 0.29 tolerated(0.31) benign(0.299) TCGA-DD-AAE7-01 15 74559069 74559069 T A CCDC33 Missense_Mutation p.Y124N 0.28 deleterious(0) probably_damaging(0.934) TCGA-DD-AAE7-01 15 81171081 81171081 C A KIAA1199 Missense_Mutation p.D38E 0.15 deleterious(0.03) benign(0.033) TCGA-DD-AAE7-01 15 81635637 81635637 T A TMC3 Missense_Mutation p.Y566F 0.32 tolerated(0.55) possibly_damaging(0.884) TCGA-DD-AAE7-01 16 16243924 16243924 A T ABCC6 3'UTR 0.30 TCGA-DD-AAE7-01 16 19514862 19514862 T G GDE1 Missense_Mutation p.Y309S 0.13 deleterious(0) probably_damaging(0.962) TCGA-DD-AAE7-01 16 24373234 24373234 T C CACNG3 3'UTR 0.24 TCGA-DD-AAE7-01 16 2483037 2483037 C A CCNF Missense_Mutation p.P83T 0.22 deleterious(0) probably_damaging(1) TCGA-DD-AAE7-01 16 48596122 48596122 T G N4BP1 Missense_Mutation p.K144N 0.19 tolerated(1) benign(0) TCGA-DD-AAE7-01 16 50100277 50100277 G T HEATR3 Splice_Site p.X47_splice 0.33 TCGA-DD-AAE7-01 16 53340154 53340154 A T CHD9 Missense_Mutation p.T2209S 0.28 unknown(0) TCGA-DD-AAE7-01 16 53639514 53639514 G C RPGRIP1L Silent p.T1238T 0.26 TCGA-DD-AAE7-01 16 57794293 57794293 G C KIFC3 Silent p.L756L 0.07 TCGA-DD-AAE7-01 16 67969964 67969964 T A PSMB10 Silent p.T95T 0.37 TCGA-DD-AAE7-01 16 70597888 70597888 A T SF3B3 Missense_Mutation p.I800F 0.14 deleterious(0) possibly_damaging(0.482) TCGA-DD-AAE7-01 16 747364 747364 G T FBXL16 Nonsense_Mutation p.C14* 0.25 TCGA-DD-AAE7-01 16 75033939 75033939 C A ZNRF1 Missense_Mutation p.L124M 0.39 deleterious(0.02) benign(0.297) TCGA-DD-AAE7-01 16 825262 825262 G A MSLNL Silent p.A455A 0.41 TCGA-DD-AAE7-01 16 85112566 85112566 G T KIAA0513 Nonsense_Mutation p.E287* 0.41 TCGA-DD-AAE7-01 16 88555560 88555560 A G ZFPM1 Silent p.P89P 0.27 TCGA-DD-AAE7-01 16 88723903 88723903 A G MVD Missense_Mutation p.V115A 0.04 tolerated(0.5) benign(0.087) TCGA-DD-AAE7-01 16 89349878 89349878 T C ANKRD11 Silent p.K1024K 0.26 TCGA-DD-AAE7-01 17 10543714 10543714 G T MYH3 Silent p.R788R 0.36 TCGA-DD-AAE7-01 17 17206959 17206959 G T NT5M Missense_Mutation p.G32V 0.39 tolerated(0.11) benign(0.145) TCGA-DD-AAE7-01 17 1962892 1962892 T C HIC1 3'UTR 0.29 TCGA-DD-AAE7-01 17 21203863 21203863 G T MAP2K3 Nonsense_Mutation p.E58* 0.22 TCGA-DD-AAE7-01 17 35804827 35804827 G A TADA2A Silent p.L187L 0.29 TCGA-DD-AAE7-01 17 38787177 38787177 C G SMARCE1 Splice_Site p.X273_splice 0.20 TCGA-DD-AAE7-01 17 43226702 43226702 T A HEXIM1 Missense_Mutation p.S49T 0.28 deleterious_low_confidence(0.01) benign(0.13) TCGA-DD-AAE7-01 17 56688533 56688533 G T TEX14 Nonsense_Mutation p.Y397* 0.07 TCGA-DD-AAE7-01 17 60112898 60112898 T C MED13 Missense_Mutation p.N181S 0.07 tolerated(0.37) benign(0.024) TCGA-DD-AAE7-01 17 61678596 61678596 T C TACO1 Missense_Mutation p.F52L 0.20 tolerated(1) benign(0) TCGA-DD-AAE7-01 17 68172901 68172901 C G KCNJ2 3'UTR 0.08 TCGA-DD-AAE7-01 17 7077382 7077382 A C ASGR1 Missense_Mutation p.F200C 0.33 deleterious(0) probably_damaging(0.999) TCGA-DD-AAE7-01 17 7187920 7187920 C G SLC2A4 Missense_Mutation p.R282G 0.27 deleterious(0.01) benign(0.138) TCGA-DD-AAE7-01 17 73258604 73258604 A G MRPS7 Missense_Mutation p.Y37C 0.27 deleterious(0) probably_damaging(0.998) TCGA-DD-AAE7-01 17 73892831 73892831 T G TRIM65 Missense_Mutation p.N63T 0.37 tolerated(0.06) possibly_damaging(0.874) TCGA-DD-AAE7-01 17 7533495 7533507 AGAGCAGAGGCCC - SHBG Frame_Shift_Del p.E2Dfs*25 0.23 TCGA-DD-AAE7-01 17 8224283 8224283 C T ARHGEF15 Missense_Mutation p.S833L 0.32 tolerated(0.05) benign(0.162) TCGA-DD-AAE7-01 17 8416885 8416885 G T MYH10 Missense_Mutation p.L906M 0.10 probably_damaging(0.988) TCGA-DD-AAE7-01 18 12535487 12535487 C A SPIRE1 Missense_Mutation p.K239N 0.22 deleterious(0) probably_damaging(0.982) TCGA-DD-AAE7-01 18 19098141 19098141 T C GREB1L Silent p.H1806H 0.05 TCGA-DD-AAE7-01 18 19437092 19437092 C T MIB1 Silent p.N889N 0.34 TCGA-DD-AAE7-01 18 56348515 56348515 A G MALT1 Missense_Mutation p.D108G 0.27 tolerated(0.3) benign(0.184) TCGA-DD-AAE7-01 19 10610240 10610240 T C KEAP1 Missense_Mutation p.N157S 0.14 tolerated(0.45) probably_damaging(0.938) TCGA-DD-AAE7-01 19 13065097 13065097 C A GADD45GIP1 Missense_Mutation p.K198N 0.05 deleterious(0.01) probably_damaging(0.937) TCGA-DD-AAE7-01 19 14167514 14167514 C A PALM3 Missense_Mutation p.A77S 0.06 tolerated(0.06) probably_damaging(0.968) TCGA-DD-AAE7-01 19 14199567 14199567 A C SAMD1 Missense_Mutation p.D352E 0.04 deleterious(0.01) benign(0.297) TCGA-DD-AAE7-01 19 17452618 17452618 T G GTPBP3 3'UTR 0.24 TCGA-DD-AAE7-01 19 19655014 19655014 A T CILP2 Missense_Mutation p.M554L 0.29 tolerated(1) benign(0.004) TCGA-DD-AAE7-01 19 19932469 19932469 G C ZNF506 5'UTR 0.17 TCGA-DD-AAE7-01 19 30166240 30166240 T A PLEKHF1 3'UTR 0.21 TCGA-DD-AAE7-01 19 35758146 35758146 C A LSR Missense_Mutation p.P475T 0.22 tolerated(0.08) benign(0.001) TCGA-DD-AAE7-01 19 36142180 36142180 A G COX6B1 Missense_Mutation p.Y12C 0.30 deleterious(0.02) probably_damaging(0.95) TCGA-DD-AAE7-01 19 36526276 36526276 C T THAP8 3'UTR 0.20 TCGA-DD-AAE7-01 19 38229948 38229948 A G ZNF573 Silent p.T481T 0.17 TCGA-DD-AAE7-01 19 38621330 38621330 G A SIPA1L3 Missense_Mutation p.D1021N 0.25 deleterious(0) possibly_damaging(0.877) TCGA-DD-AAE7-01 19 40993612 40993612 G A SPTBN4 Missense_Mutation p.E60K 0.35 deleterious(0) benign(0.167) TCGA-DD-AAE7-01 19 42301605 42301605 A T CEACAM3 Missense_Mutation p.E50V 0.26 deleterious(0) probably_damaging(0.997) TCGA-DD-AAE7-01 19 44249035 44249035 T C SMG9 Missense_Mutation p.Y197C 0.21 deleterious(0.02) possibly_damaging(0.87) TCGA-DD-AAE7-01 19 45860629 45860629 T C ERCC2 Missense_Mutation p.T460A 0.28 deleterious(0) possibly_damaging(0.76) TCGA-DD-AAE7-01 19 47260736 47260736 T C FKRP 3'UTR 0.15 TCGA-DD-AAE7-01 19 48866554 48866554 T G TMEM143 Silent p.L86L 0.23 TCGA-DD-AAE7-01 19 50102580 50102580 G C PRR12 Missense_Mutation p.D1244H 0.06 probably_damaging(0.934) TCGA-DD-AAE7-01 19 52496613 52496613 T C ZNF615 Silent p.E583E 0.22 TCGA-DD-AAE7-01 19 52569369 52569369 C A ZNF841 Missense_Mutation p.R589I 0.20 tolerated(0.07) probably_damaging(0.98) TCGA-DD-AAE7-01 19 52793977 52793977 T C ZNF766 Silent p.S311S 0.20 TCGA-DD-AAE7-01 19 52919622 52919622 C A ZNF528 Nonsense_Mutation p.S506* 0.28 TCGA-DD-AAE7-01 19 53613070 53613070 A T ZNF415 Missense_Mutation p.H76Q 0.25 tolerated(0.15) probably_damaging(0.934) TCGA-DD-AAE7-01 19 53643694 53643694 C A ZNF347 Missense_Mutation p.G797V 0.23 deleterious(0) probably_damaging(0.972) TCGA-DD-AAE7-01 19 53959293 53959293 G A ZNF761 RNA 0.05 TCGA-DD-AAE7-01 19 54378657 54378657 C T MYADM 3'UTR 0.28 TCGA-DD-AAE7-01 19 54677808 54677808 C - MBOAT7 Frame_Shift_Del p.G450Afs*39 0.11 TCGA-DD-AAE7-01 19 55798667 55798667 T A BRSK1 Nonsense_Mutation p.L106* 0.23 TCGA-DD-AAE7-01 19 56390306 56390306 C T NLRP4 Missense_Mutation p.P948L 0.31 deleterious(0.02) benign(0.11) TCGA-DD-AAE7-01 19 56443582 56443582 G T NLRP13 Missense_Mutation p.F32L 0.26 tolerated(0.06) probably_damaging(0.989) TCGA-DD-AAE7-01 19 56935118 56935153 GTGGATACCTAATTGTACATCAGAGAATTCATACTG - ZNF583 In_Frame_Del p.G365_G376del 0.21 TCGA-DD-AAE7-01 19 5824084 5824084 C T NRTN 5'UTR 0.25 TCGA-DD-AAE7-01 19 58639453 58639453 T A ZNF329 Missense_Mutation p.H473L 0.21 deleterious(0) probably_damaging(1) TCGA-DD-AAE7-01 19 7794134 7794134 G C CLEC4G 3'UTR 0.27 TCGA-DD-AAE7-01 19 9049646 9049646 T A MUC16 Missense_Mutation p.D10662V 0.32 benign(0.003) TCGA-DD-AAE7-01 1 110464543 110464543 G T CSF1 Missense_Mutation p.K157N 0.27 tolerated(0.12) probably_damaging(0.965) TCGA-DD-AAE7-01 1 111492489 111492489 T G LRIF1 Missense_Mutation p.E618A 0.27 deleterious(0.05) benign(0) TCGA-DD-AAE7-01 1 112999847 112999847 A C CTTNBP2NL Missense_Mutation p.N578T 0.18 deleterious(0.03) benign(0.34) TCGA-DD-AAE7-01 1 115256463 115256463 G C NRAS Missense_Mutation p.A83G 0.34 deleterious(0) benign(0.335) TCGA-DD-AAE7-01 1 12082290 12082290 C T MIIP Missense_Mutation p.R85C 0.32 tolerated(0.21) benign(0.001) TCGA-DD-AAE7-01 1 13839858 13839858 G A LRRC38 Silent p.I77I 0.29 TCGA-DD-AAE7-01 1 145304497 145304497 A C NBPF10 Missense_Mutation p.E477A 0.18 possibly_damaging(0.581) TCGA-DD-AAE7-01 1 153747926 153747926 T C SLC27A3 Missense_Mutation p.F32L 0.31 tolerated_low_confidence(1) unknown(0) TCGA-DD-AAE7-01 1 155220590 155220590 C T FAM189B Silent p.L329L 0.39 TCGA-DD-AAE7-01 1 155269945 155269945 A C PKLR Missense_Mutation p.L76R 0.22 deleterious(0) probably_damaging(1) TCGA-DD-AAE7-01 1 156195414 156195414 A G PMF1 Intron 0.35 TCGA-DD-AAE7-01 1 156821786 156821786 G A INSRR Missense_Mutation p.R279C 0.33 tolerated(0.13) benign(0.436) TCGA-DD-AAE7-01 1 159826390 159826390 T A VSIG8 Silent p.A232A 0.04 TCGA-DD-AAE7-01 1 161089103 161089103 G C NIT1 Missense_Mutation p.R93P 0.20 tolerated(0.14) benign(0.01) TCGA-DD-AAE7-01 1 165796940 165796941 GC - UCK2 5'UTR 0.24 TCGA-DD-AAE7-01 1 171751168 171751168 T C METTL13 Missense_Mutation p.F21L 0.24 deleterious(0) possibly_damaging(0.893) TCGA-DD-AAE7-01 1 184681698 184681698 A G EDEM3 Missense_Mutation p.Y469H 0.35 deleterious(0) probably_damaging(1) TCGA-DD-AAE7-01 1 205884398 205884398 C A SLC26A9 Intron 0.34 TCGA-DD-AAE7-01 1 210187041 210187041 T G SYT14 Missense_Mutation p.L87R 0.20 deleterious(0) probably_damaging(0.977) TCGA-DD-AAE7-01 1 211748979 211748980 - CCTAC SLC30A1 Nonsense_Mutation p.S426* 0.21 TCGA-DD-AAE7-01 1 214811265 214811265 A C CENPF Missense_Mutation p.E501D 0.05 probably_damaging(0.986) TCGA-DD-AAE7-01 1 220156627 220156627 G T EPRS Silent p.I1068I 0.33 TCGA-DD-AAE7-01 1 237948162 237948162 C A RYR2 Missense_Mutation p.L4384M 0.29 probably_damaging(0.99) TCGA-DD-AAE7-01 1 243809237 243809237 T A AKT3 Silent p.G129G 0.36 TCGA-DD-AAE7-01 1 27101213 27101213 C T ARID1A Nonsense_Mutation p.Q1499* 0.05 TCGA-DD-AAE7-01 1 28920207 28920207 T A RAB42 Intron 0.25 TCGA-DD-AAE7-01 1 31766196 31766196 C A SNRNP40 Splice_Site p.X48_splice 0.22 TCGA-DD-AAE7-01 1 33330349 33330349 T - FNDC5 Frame_Shift_Del p.E108Dfs*93 0.23 TCGA-DD-AAE7-01 1 36354067 36354067 A G AGO1 Missense_Mutation p.Q22R 0.04 tolerated(1) benign(0.089) TCGA-DD-AAE7-01 1 38061409 38061409 C T GNL2 Silent p.K5K 0.19 TCGA-DD-AAE7-01 1 45809148 45809148 G A TOE1 Missense_Mutation p.G436E 0.31 deleterious(0) probably_damaging(0.999) TCGA-DD-AAE7-01 1 46497890 46497890 A T MAST2 Silent p.P1076P 0.32 TCGA-DD-AAE7-01 1 52281991 52281991 T G NRD1 Silent p.R546R 0.28 TCGA-DD-AAE7-01 1 59158557 59158557 A G MYSM1 Missense_Mutation p.I65T 0.26 deleterious(0) probably_damaging(0.999) TCGA-DD-AAE7-01 1 59248909 59248909 C T JUN 5'UTR 0.53 TCGA-DD-AAE7-01 1 62941590 62941590 C T DOCK7 Missense_Mutation p.E1886K 0.24 deleterious(0) probably_damaging(0.998) TCGA-DD-AAE7-01 1 65775394 65775394 A T DNAJC6 5'UTR 0.28 TCGA-DD-AAE7-01 1 85551546 85551546 A G WDR63 Silent p.E191E 0.31 TCGA-DD-AAE7-01 1 9098489 9098489 C T SLC2A5 Splice_Site p.X392_splice 0.30 TCGA-DD-AAE7-01 1 94079589 94079589 T C BCAR3 Intron 0.33 TCGA-DD-AAE7-01 20 1276832 1276832 C G SNPH Intron 0.33 TCGA-DD-AAE7-01 20 14307783 14307783 G C FLRT3 Missense_Mutation p.L124V 0.04 deleterious(0) probably_damaging(0.999) TCGA-DD-AAE7-01 20 17968898 17968898 C T MGME1 Missense_Mutation p.A274V 0.25 deleterious(0) probably_damaging(1) TCGA-DD-AAE7-01 20 30070207 30070207 C T REM1 Missense_Mutation p.R181C 0.10 deleterious(0) probably_damaging(0.995) TCGA-DD-AAE7-01 20 39750683 39750683 G A TOP1 Missense_Mutation p.E695K 0.24 tolerated(0.41) benign(0.074) TCGA-DD-AAE7-01 20 43922619 43922619 G A MATN4 Missense_Mutation p.P539L 0.20 benign(0.159) TCGA-DD-AAE7-01 20 47695153 47695153 A G CSE1L Silent p.R492R 0.29 TCGA-DD-AAE7-01 20 52675210 52675210 A T BCAS1 Missense_Mutation p.N16K 0.33 tolerated(0.1) benign(0.003) TCGA-DD-AAE7-01 20 55027580 55027580 A T CASS4 Nonsense_Mutation p.K450* 0.27 TCGA-DD-AAE7-01 20 61526440 61526440 A G DIDO1 Silent p.S764S 0.31 TCGA-DD-AAE7-01 20 62153515 62153515 G T PPDPF 3'UTR 0.33 TCGA-DD-AAE7-01 20 826010 826010 A T FAM110A Missense_Mutation p.K188M 0.35 deleterious(0) probably_damaging(1) TCGA-DD-AAE7-01 20 8608966 8608966 A G PLCB1 Missense_Mutation p.D91G 0.26 tolerated(0.72) benign(0.007) TCGA-DD-AAE7-01 21 30927495 30927497 CAC - GRIK1 In_Frame_Del p.S828_A829delinsT 0.31 TCGA-DD-AAE7-01 21 42622773 42622773 T C BACE2 Missense_Mutation p.I360T 0.21 deleterious(0) probably_damaging(0.984) TCGA-DD-AAE7-01 21 45152295 45152295 A C PDXK Intron 0.28 TCGA-DD-AAE7-01 21 47549212 47549215 TAAA - COL6A2 Intron 0.30 TCGA-DD-AAE7-01 22 17601446 17601453 GCGCAGCC - CECR6 Frame_Shift_Del p.G189Pfs*43 0.28 TCGA-DD-AAE7-01 22 21900361 21900361 G C RIMBP3C Silent p.S1635S 0.27 TCGA-DD-AAE7-01 22 21988580 21988580 A G CCDC116 Silent p.P114P 0.22 TCGA-DD-AAE7-01 22 24698203 24698203 A - SPECC1L Frame_Shift_Del p.K2Rfs*16 0.22 TCGA-DD-AAE7-01 22 32150896 32150896 A C DEPDC5 5'UTR 0.26 TCGA-DD-AAE7-01 22 38120263 38120263 C G TRIOBP Missense_Mutation p.P567R 0.10 deleterious_low_confidence(0) benign(0) TCGA-DD-AAE7-01 2 109383255 109383255 A G RANBP2 Missense_Mutation p.H2087R 0.22 deleterious(0) probably_damaging(1) TCGA-DD-AAE7-01 2 113404719 113404719 G A SLC20A1 Missense_Mutation p.G105D 0.05 deleterious(0) probably_damaging(0.998) TCGA-DD-AAE7-01 2 125672720 125672720 T C CNTNAP5 3'UTR 0.04 TCGA-DD-AAE7-01 2 148715877 148715877 T C ORC4 Missense_Mutation p.D126G 0.37 tolerated(0.38) possibly_damaging(0.582) TCGA-DD-AAE7-01 2 149528862 149528862 A T EPC2 Missense_Mutation p.E542D 0.21 tolerated(0.38) benign(0.001) TCGA-DD-AAE7-01 2 167136943 167136943 A C SCN9A Nonsense_Mutation p.L745* 0.26 TCGA-DD-AAE7-01 2 169721359 169721359 T C NOSTRIN Missense_Mutation p.I524T 0.22 deleterious(0.02) possibly_damaging(0.9) TCGA-DD-AAE7-01 2 171974343 171974343 A T TLK1 Missense_Mutation p.L55Q 0.25 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-DD-AAE7-01 2 179583266 179583266 A G TTN Silent p.V8189V 0.29 TCGA-DD-AAE7-01 2 182542454 182542454 A T NEUROD1 3'UTR 0.36 TCGA-DD-AAE7-01 2 191365071 191365071 A G MFSD6 3'UTR 0.32 TCGA-DD-AAE7-01 2 203996708 203996708 A G NBEAL1 Missense_Mutation p.M1164V 0.29 tolerated(0.12) benign(0.206) TCGA-DD-AAE7-01 2 210569340 210569340 A G MAP2 Intron 0.09 TCGA-DD-AAE7-01 2 220406657 220406657 T C CHPF Missense_Mutation p.D190G 0.30 tolerated(0.4) benign(0.005) TCGA-DD-AAE7-01 2 231165 231165 T C SH3YL1 Missense_Mutation p.Y187C 0.27 tolerated(0.17) benign(0.013) TCGA-DD-AAE7-01 2 241570342 241570342 G A GPR35 3'UTR 0.26 TCGA-DD-AAE7-01 2 27560308 27560308 G T GTF3C2 Intron 0.31 TCGA-DD-AAE7-01 2 27606940 27606940 T A PPM1G Missense_Mutation p.D282V 0.08 deleterious(0.01) probably_damaging(0.942) TCGA-DD-AAE7-01 2 27668656 27668656 C A IFT172 Missense_Mutation p.D1624Y 0.29 deleterious(0) probably_damaging(0.998) TCGA-DD-AAE7-01 2 29237345 29237345 C T FAM179A Missense_Mutation p.T321M 0.47 tolerated(0.25) benign(0.005) TCGA-DD-AAE7-01 2 54870184 54870184 A G SPTBN1 Missense_Mutation p.N1308S 0.19 tolerated(0.09) probably_damaging(0.999) TCGA-DD-AAE7-01 2 55191747 55191747 G A EML6 Missense_Mutation p.E1791K 0.31 deleterious(0.01) benign(0.423) TCGA-DD-AAE7-01 2 5836660 5836660 T A SOX11 3'UTR 0.31 TCGA-DD-AAE7-01 2 64118290 64118290 A C UGP2 Missense_Mutation p.I486L 0.30 tolerated(0.12) benign(0.21) TCGA-DD-AAE7-01 2 65299207 65299207 A T CEP68 Missense_Mutation p.D326V 0.47 deleterious(0) possibly_damaging(0.805) TCGA-DD-AAE7-01 2 74761507 74761507 A G LOXL3 Silent p.N625N 0.30 TCGA-DD-AAE7-01 2 84517967 84517967 T A FUNDC2P2 RNA 0.31 TCGA-DD-AAE7-01 2 84896476 84896476 T A DNAH6 Missense_Mutation p.W2050R 0.25 deleterious(0) probably_damaging(1) TCGA-DD-AAE7-01 2 96930988 96930988 C T TMEM127 Silent p.L44L 0.29 TCGA-DD-AAE7-01 2 99204218 99204218 G T INPP4A 3'UTR 0.31 TCGA-DD-AAE7-01 3 10084812 10084812 T C FANCD2 Silent p.L323L 0.38 TCGA-DD-AAE7-01 3 128969533 128969533 T C COPG1 Missense_Mutation p.S16P 0.20 tolerated(0.17) benign(0.212) TCGA-DD-AAE7-01 3 130285970 130285970 T C COL6A6 Silent p.A569A 0.03 TCGA-DD-AAE7-01 3 140401678 140401678 A T TRIM42 Missense_Mutation p.Q239L 0.12 deleterious(0) probably_damaging(0.925) TCGA-DD-AAE7-01 3 150127758 150127758 T G TSC22D2 Silent p.T207T 0.19 TCGA-DD-AAE7-01 3 150262283 150262283 T C SERP1 Missense_Mutation p.I55V 0.26 tolerated(0.54) benign(0.042) TCGA-DD-AAE7-01 3 154022720 154022720 T C DHX36 Missense_Mutation p.H337R 0.04 deleterious(0) probably_damaging(1) TCGA-DD-AAE7-01 3 156422478 156422478 A C TIPARP Missense_Mutation p.K511T 0.27 deleterious(0) probably_damaging(0.946) TCGA-DD-AAE7-01 3 160099508 160099508 T G IFT80 Missense_Mutation p.Q14H 0.07 tolerated(0.14) benign(0.101) TCGA-DD-AAE7-01 3 173997093 173997094 - ACC NLGN1 In_Frame_Ins p.T435dup 0.23 TCGA-DD-AAE7-01 3 183884260 183884260 G C DVL3 Missense_Mutation p.M310I 0.05 deleterious(0) probably_damaging(0.939) TCGA-DD-AAE7-01 3 184642719 184642719 C T VPS8 Missense_Mutation p.L842F 0.15 deleterious(0.01) probably_damaging(0.969) TCGA-DD-AAE7-01 3 186572334 186572334 T A ADIPOQ Missense_Mutation p.N192K 0.23 tolerated(0.76) benign(0.004) TCGA-DD-AAE7-01 3 197009694 197009694 C T DLG1 Silent p.V58V 0.23 TCGA-DD-AAE7-01 3 197023325 197023325 A C DLG1 Missense_Mutation p.L15V 0.27 deleterious(0) possibly_damaging(0.869) TCGA-DD-AAE7-01 3 27763601 27763601 T A EOMES Missense_Mutation p.E62V 0.26 deleterious_low_confidence(0.03) benign(0) TCGA-DD-AAE7-01 3 42576555 42576555 G A VIPR1 Missense_Mutation p.E367K 0.28 tolerated(0.21) possibly_damaging(0.861) TCGA-DD-AAE7-01 3 48936249 48936249 G A SLC25A20 5'UTR 0.25 TCGA-DD-AAE7-01 3 49200857 49200857 G C CCDC71 Missense_Mutation p.T262S 0.18 tolerated(0.89) benign(0.082) TCGA-DD-AAE7-01 3 51991263 51991263 G A GPR62 3'UTR 0.24 TCGA-DD-AAE7-01 3 52304771 52304771 A T WDR82 Silent p.T72T 0.26 TCGA-DD-AAE7-01 3 52430633 52430633 G C DNAH1 Splice_Site p.X3811_splice 0.08 TCGA-DD-AAE7-01 3 66431958 66431958 T C LRIG1 Silent p.K905K 0.37 TCGA-DD-AAE7-01 3 73113262 73113262 G A PPP4R2 Silent p.E201E 0.25 TCGA-DD-AAE7-01 3 99567920 99567920 T G FILIP1L Missense_Mutation p.K867T 0.29 deleterious(0.02) possibly_damaging(0.597) TCGA-DD-AAE7-01 4 103236884 103236884 A C SLC39A8 Missense_Mutation p.L108W 0.17 deleterious(0) probably_damaging(0.91) TCGA-DD-AAE7-01 4 110687778 110687778 T G CFI Missense_Mutation p.Q87P 0.23 deleterious(0.01) probably_damaging(0.977) TCGA-DD-AAE7-01 4 141543436 141543436 G A TBC1D9 Silent p.A1238A 0.11 TCGA-DD-AAE7-01 4 169835138 169835138 C G PALLD Missense_Mutation p.P895A 0.07 tolerated(0.15) possibly_damaging(0.78) TCGA-DD-AAE7-01 4 175580328 175580328 A G GLRA3 Silent p.I316I 0.29 TCGA-DD-AAE7-01 4 186997921 186997921 C A TLR3 Missense_Mutation p.P50T 0.34 deleterious(0) probably_damaging(0.999) TCGA-DD-AAE7-01 4 2010721 2010721 T G NELFA 5'UTR 0.05 TCGA-DD-AAE7-01 4 38828947 38828947 G T TLR6 Silent p.L716L 0.05 TCGA-DD-AAE7-01 4 42119695 42119695 T C BEND4 Missense_Mutation p.Q482R 0.22 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-DD-AAE7-01 4 46042913 46042913 G A GABRG1 3'UTR 0.09 TCGA-DD-AAE7-01 4 48096195 48096195 T C TXK Missense_Mutation p.Y203C 0.24 deleterious(0) probably_damaging(0.941) TCGA-DD-AAE7-01 4 6279336 6279336 C T WFS1 Missense_Mutation p.P52S 0.06 tolerated_low_confidence(0.37) benign(0.007) TCGA-DD-AAE7-01 4 6596347 6596354 GCTCGGTG - MAN2B2 Frame_Shift_Del p.E315Dfs*104 0.27 TCGA-DD-AAE7-01 4 70361213 70361216 GTAT - UGT2B4 Frame_Shift_Del p.I122Lfs*8 0.33 TCGA-DD-AAE7-01 4 77091120 77091120 G T SCARB2 Missense_Mutation p.S338Y 0.27 deleterious(0) probably_damaging(0.977) TCGA-DD-AAE7-01 4 77095407 77095407 T C SCARB2 Missense_Mutation p.Y295C 0.33 deleterious(0) probably_damaging(0.943) TCGA-DD-AAE7-01 4 77677774 77677774 C G SHROOM3 Missense_Mutation p.L1628V 0.04 tolerated(0.41) benign(0.075) TCGA-DD-AAE7-01 4 79432627 79432627 A C FRAS1 Missense_Mutation p.Y3327S 0.30 probably_damaging(0.992) TCGA-DD-AAE7-01 4 85639621 85639621 T A WDFY3 Missense_Mutation p.M2570L 0.23 tolerated(1) benign(0) TCGA-DD-AAE7-01 4 9785495 9785495 C T DRD5 3'UTR 0.32 TCGA-DD-AAE7-01 5 10465005 10465005 T C ROPN1L Silent p.F213F 0.19 TCGA-DD-AAE7-01 5 115319017 115319017 T C AQPEP Silent p.F243F 0.03 TCGA-DD-AAE7-01 5 129072975 129072975 G T ADAMTS19 3'UTR 0.12 TCGA-DD-AAE7-01 5 13718998 13718998 T C DNAH5 Silent p.T4164T 0.35 TCGA-DD-AAE7-01 5 137492802 137492802 T A BRD8 Intron 0.40 TCGA-DD-AAE7-01 5 139941993 139941993 T C APBB3 Missense_Mutation p.Q148R 0.19 tolerated(1) probably_damaging(0.992) TCGA-DD-AAE7-01 5 140181280 140181280 G A PCDHA3 Silent p.S166S 0.36 TCGA-DD-AAE7-01 5 140575142 140575142 A G PCDHB10 3'UTR 0.25 TCGA-DD-AAE7-01 5 154330405 154330405 C G MRPL22 Missense_Mutation p.H34Q 0.08 deleterious(0) benign(0.323) TCGA-DD-AAE7-01 5 161128536 161128536 G T GABRA6 Missense_Mutation p.R373S 0.29 tolerated(0.21) benign(0.054) TCGA-DD-AAE7-01 5 176018233 176018233 A G CDHR2 Missense_Mutation p.M1188V 0.24 tolerated(0.4) benign(0.001) TCGA-DD-AAE7-01 5 176813072 176813072 G A SLC34A1 Missense_Mutation p.G65E 0.08 tolerated(0.09) possibly_damaging(0.494) TCGA-DD-AAE7-01 5 32739134 32739134 T A NPR3 Missense_Mutation p.Y353N 0.28 tolerated(0.79) benign(0.016) TCGA-DD-AAE7-01 5 35904536 35904536 A G CAPSL 3'UTR 0.18 TCGA-DD-AAE7-01 5 38945618 38945618 T A RICTOR Missense_Mutation p.Q1536H 0.30 tolerated(0.09) benign(0.003) TCGA-DD-AAE7-01 5 42808383 42808383 T G SEPP1 Missense_Mutation p.S25R 0.09 tolerated(0.12) probably_damaging(0.931) TCGA-DD-AAE7-01 5 50091213 50091213 A G PARP8 Missense_Mutation p.I464V 0.03 tolerated_low_confidence(0.18) benign(0.064) TCGA-DD-AAE7-01 5 54442593 54442593 A C CDC20B Missense_Mutation p.I73S 0.27 deleterious(0) possibly_damaging(0.779) TCGA-DD-AAE7-01 5 66396331 66396331 C A MAST4 Missense_Mutation p.F327L 0.07 possibly_damaging(0.66) TCGA-DD-AAE7-01 5 74650335 74650335 C T HMGCR Missense_Mutation p.A459V 0.12 tolerated(0.05) benign(0.037) TCGA-DD-AAE7-01 5 77423969 77423969 T C AP3B1 Missense_Mutation p.Q618R 0.38 tolerated(0.07) benign(0.014) TCGA-DD-AAE7-01 5 96117490 96117490 A G ERAP1 Missense_Mutation p.L785P 0.21 deleterious(0) probably_damaging(1) TCGA-DD-AAE7-01 6 100016396 100016396 C T CCNC Missense_Mutation p.G3E 0.10 tolerated(0.06) possibly_damaging(0.669) TCGA-DD-AAE7-01 6 105585599 105585599 G A BVES 5'Flank 0.10 TCGA-DD-AAE7-01 6 109863371 109863371 G T AK9 Missense_Mutation p.P1077T 0.30 tolerated(0.14) benign(0.077) TCGA-DD-AAE7-01 6 111320922 111320922 T C RPF2 Missense_Mutation p.Y109H 0.07 tolerated(0.06) probably_damaging(0.964) TCGA-DD-AAE7-01 6 131895240 131895240 G C ARG1 Intron 0.32 TCGA-DD-AAE7-01 6 132938564 132938564 C A TAAR2 Missense_Mutation p.A261S 0.29 deleterious(0) possibly_damaging(0.822) TCGA-DD-AAE7-01 6 135357985 135357985 T G HBS1L Intron 0.27 TCGA-DD-AAE7-01 6 138584345 138584345 T C KIAA1244 Silent p.T575T 0.40 TCGA-DD-AAE7-01 6 144869853 144869874 ATTTCAATTCCTGCTGATCTTG - UTRN Frame_Shift_Del p.S2226Kfs*3 0.24 TCGA-DD-AAE7-01 6 150022993 150023000 ATTTGCAA - LATS1 Frame_Shift_Del p.F88* 0.10 TCGA-DD-AAE7-01 6 169650830 169650830 T G THBS2 Missense_Mutation p.Q17P 0.29 tolerated_low_confidence(0.22) benign(0.048) TCGA-DD-AAE7-01 6 170103551 170103551 C A C6orf120 3'UTR 0.32 TCGA-DD-AAE7-01 6 17675798 17675798 T G NUP153 Missense_Mutation p.N180H 0.19 deleterious(0) probably_damaging(1) TCGA-DD-AAE7-01 6 31555021 31555021 A G LST1 5'UTR 0.13 TCGA-DD-AAE7-01 6 31916236 31916236 A T CFB Missense_Mutation p.D830V 0.19 tolerated(0.09) benign(0.006) TCGA-DD-AAE7-01 6 36334437 36334437 T A ETV7 Silent p.P337P 0.24 TCGA-DD-AAE7-01 6 39867903 39867903 C A DAAM2 Silent p.V910V 0.07 TCGA-DD-AAE7-01 6 46794122 46794122 T C MEP1A Silent p.T270T 0.35 TCGA-DD-AAE7-01 6 51889983 51889983 T G PKHD1 Missense_Mutation p.D1542A 0.26 tolerated(0.93) benign(0.05) TCGA-DD-AAE7-01 6 52850272 52850272 G T GSTA4 Silent p.G83G 0.25 TCGA-DD-AAE7-01 6 56401645 56401645 T C DST Missense_Mutation p.T2945A 0.27 benign(0.015) TCGA-DD-AAE7-01 6 7327057 7327057 A T CAGE1 3'UTR 0.06 TCGA-DD-AAE7-01 6 86194984 86194984 G T NT5E Silent p.G261G 0.27 TCGA-DD-AAE7-01 6 88387595 88387595 T G AKIRIN2 Missense_Mutation p.K157T 0.34 deleterious(0) possibly_damaging(0.814) TCGA-DD-AAE7-01 7 100148104 100148104 T C AGFG2 Missense_Mutation p.F134S 0.25 deleterious(0) probably_damaging(0.999) TCGA-DD-AAE7-01 7 106509371 106509371 G C PIK3CG Missense_Mutation p.K455N 0.05 deleterious(0.03) possibly_damaging(0.487) TCGA-DD-AAE7-01 7 123672482 123672482 C T TMEM229A Silent p.Q192Q 0.08 TCGA-DD-AAE7-01 7 128394594 128394594 A G CALU Missense_Mutation p.D86G 0.30 tolerated(0.07) benign(0) TCGA-DD-AAE7-01 7 18687484 18687484 A G HDAC9 Missense_Mutation p.Y371C 0.34 tolerated(0.07) probably_damaging(0.917) TCGA-DD-AAE7-01 7 23776654 23776654 A G STK31 Missense_Mutation p.K325R 0.34 tolerated(0.14) benign(0.077) TCGA-DD-AAE7-01 7 63720639 63720639 T A ZNF679 Missense_Mutation p.L27Q 0.29 tolerated(0.05) probably_damaging(0.951) TCGA-DD-AAE7-01 7 64389498 64389498 C T ZNF273 3'UTR 0.40 TCGA-DD-AAE7-01 7 72667582 72667582 T C GTF2IRD2P1 RNA 0.23 TCGA-DD-AAE7-01 7 75508314 75508314 G A RHBDD2 5'UTR 0.27 TCGA-DD-AAE7-01 7 81350161 81350197 AATCTAGACATAAAATATACAGAAATAAGTCCAATGA - HGF Splice_Site p.X390_splice 0.23 TCGA-DD-AAE7-01 7 94164696 94164696 C A CASD1 Missense_Mutation p.A235D 0.03 deleterious(0) possibly_damaging(0.561) TCGA-DD-AAE7-01 7 98963599 98963599 G T ARPC1A 3'UTR 0.30 TCGA-DD-AAE7-01 7 98985732 98985732 G A ARPC1B Silent p.T80T 0.30 TCGA-DD-AAE7-01 8 102213861 102213861 A C ZNF706 Missense_Mutation p.L37V 0.16 deleterious(0) unknown(0) TCGA-DD-AAE7-01 8 103573092 103573092 T A ODF1 Missense_Mutation p.C245S 0.10 deleterious_low_confidence(0) benign(0.152) TCGA-DD-AAE7-01 8 104065039 104065039 A G ATP6V1C1 Silent p.E154E 0.25 TCGA-DD-AAE7-01 8 105601171 105601171 A T LRP12 5'UTR 0.08 TCGA-DD-AAE7-01 8 124664885 124664885 C T KLHL38 Silent p.T94T 0.26 TCGA-DD-AAE7-01 8 133099901 133099901 C G HHLA1 Silent p.L261L 0.21 TCGA-DD-AAE7-01 8 146068016 146068016 G C ZNF7 Missense_Mutation p.Q508H 0.49 tolerated(0.2) probably_damaging(0.996) TCGA-DD-AAE7-01 8 23712266 23712266 T C STC1 5'UTR 0.33 TCGA-DD-AAE7-01 8 33361357 33361357 C A TTI2 Missense_Mutation p.V342F 0.37 deleterious(0) probably_damaging(0.996) TCGA-DD-AAE7-01 8 35579903 35579903 A T UNC5D Silent p.T431T 0.16 TCGA-DD-AAE7-01 8 61736580 61736580 G T CHD7 Intron 0.24 TCGA-DD-AAE7-01 8 82598039 82598046 CTGTTTCT - IMPA1 Frame_Shift_Del p.E36Rfs*24 0.25 TCGA-DD-AAE7-01 8 95884163 95884163 T G INTS8 Silent p.V822V 0.33 TCGA-DD-AAE7-01 9 108061522 108061522 C A SLC44A1 Missense_Mutation p.P20T 0.07 deleterious(0) probably_damaging(0.949) TCGA-DD-AAE7-01 9 122027 122027 C A CBWD1 Missense_Mutation p.D339Y 0.08 deleterious(0) probably_damaging(0.996) TCGA-DD-AAE7-01 9 132687236 132687236 T A FNBP1 Intron 0.28 TCGA-DD-AAE7-01 9 133799206 133799206 G A FIBCD1 Silent p.Y258Y 0.36 TCGA-DD-AAE7-01 9 136280068 136280068 T A REXO4 Nonsense_Mutation p.K97* 0.27 TCGA-DD-AAE7-01 9 140099879 140099879 G C TMEM203 5'UTR 0.36 TCGA-DD-AAE7-01 9 33948698 33948698 A G UBAP2 Intron 0.26 TCGA-DD-AAE7-01 9 37801305 37801305 A G DCAF10 Missense_Mutation p.M148V 0.26 tolerated(0.08) benign(0.053) TCGA-DD-AAE7-01 9 99521444 99521447 TTTT - ZNF510 Frame_Shift_Del p.K556Ifs*114 0.21 TCGA-DD-AAE7-01 X 100912386 100912386 G T ARMCX2 Silent p.I63I 0.32 TCGA-DD-AAE7-01 X 102006907 102006907 G T BHLHB9 3'UTR 0.58 TCGA-DD-AAE7-01 X 117570751 117570751 T A WDR44 Missense_Mutation p.H646Q 0.61 deleterious(0) probably_damaging(1) TCGA-DD-AAE7-01 X 119410802 119410802 T A TMEM255A Missense_Mutation p.N229Y 0.66 deleterious(0) probably_damaging(0.999) TCGA-DD-AAE7-01 X 134427746 134427746 G T ZNF75D Missense_Mutation p.N107K 0.17 deleterious(0.01) benign(0.247) TCGA-DD-AAE7-01 X 140785577 140785577 C G SPANXD 3'UTR 0.07 TCGA-DD-AAE7-01 X 153059831 153059831 G T SSR4 5'UTR 0.07 TCGA-DD-AAE7-01 X 18938153 18938153 G C PHKA2 Missense_Mutation p.Q654E 0.09 tolerated(1) benign(0.001) TCGA-DD-AAE7-01 X 23802253 23802253 T G SAT1 Intron 0.69 TCGA-DD-AAE7-01 X 31366711 31366711 T G DMD Missense_Mutation p.H3042P 0.65 benign(0.402) TCGA-DD-AAE7-01 X 35989801 35989801 T A CXorf22 Missense_Mutation p.L690Q 0.35 tolerated(0.18) benign(0.087) TCGA-DD-AAE7-01 X 45010995 45010995 C - CXorf36 Frame_Shift_Del p.A402Pfs*5 0.40 TCGA-DD-AAE7-01 X 50213266 50213266 C T DGKK RNA 0.10 TCGA-DD-AAE7-01 X 8434394 8434394 G A VCX3B Silent p.E237E 0.07 TCGA-DD-AAE7-01 X 8434395 8434395 A T VCX3B Missense_Mutation p.S238C 0.09 tolerated_low_confidence(0.11) unknown(0) TCGA-DD-AAE8-01 10 115895966 115895966 G A C10orf118 Missense_Mutation p.L456F 0.09 deleterious(0.02) possibly_damaging(0.519) TCGA-DD-AAE8-01 10 38121809 38121809 C G ZNF248 Missense_Mutation p.K158N 0.09 tolerated(0.1) possibly_damaging(0.707) TCGA-DD-AAE8-01 11 103780420 103780420 T C PDGFD 3'UTR 0.25 TCGA-DD-AAE8-01 11 113934393 113934393 C A ZBTB16 Missense_Mutation p.T124N 0.18 deleterious(0.01) possibly_damaging(0.793) TCGA-DD-AAE8-01 11 118405441 118405441 T G TMEM25 3'UTR 0.50 TCGA-DD-AAE8-01 11 118842703 118842703 G T FOXR1 Splice_Site p.X21_splice 0.09 TCGA-DD-AAE8-01 11 1578679 1578679 G A DUSP8 Missense_Mutation p.T316M 0.38 tolerated(0.12) benign(0.013) TCGA-DD-AAE8-01 11 4159583 4159583 T C RRM1 Silent p.N783N 0.20 TCGA-DD-AAE8-01 11 43702259 43702259 A C HSD17B12 5'UTR 0.35 TCGA-DD-AAE8-01 11 68772956 68772956 G A MRGPRF Silent p.Y274Y 0.23 TCGA-DD-AAE8-01 12 101673924 101673924 G T UTP20 5'UTR 0.30 TCGA-DD-AAE8-01 12 104519915 104519915 T G NFYB Missense_Mutation p.N70H 0.25 deleterious(0.01) possibly_damaging(0.883) TCGA-DD-AAE8-01 12 31585991 31585991 A T DENND5B Intron 0.08 TCGA-DD-AAE8-01 12 40153944 40153944 T C SLC2A13 Missense_Mutation p.N611D 0.16 tolerated(0.35) benign(0.004) TCGA-DD-AAE8-01 12 40761622 40761622 A G LRRK2 3'UTR 0.29 TCGA-DD-AAE8-01 12 6978268 6978268 G C TPI1 Missense_Mutation p.G119A 0.08 tolerated(0.95) benign(0.03) TCGA-DD-AAE8-01 13 107164955 107164955 A T EFNB2 Missense_Mutation p.F110I 0.07 deleterious(0) probably_damaging(0.969) TCGA-DD-AAE8-01 13 48986448 48986448 C A LPAR6 Missense_Mutation p.A38S 0.08 tolerated(0.18) possibly_damaging(0.889) TCGA-DD-AAE8-01 13 88328839 88328839 A T SLITRK5 Missense_Mutation p.E399V 0.23 tolerated(0.11) benign(0.121) TCGA-DD-AAE8-01 14 102973397 102973397 G A ANKRD9 Missense_Mutation p.S277L 0.21 tolerated(0.07) probably_damaging(0.953) TCGA-DD-AAE8-01 14 105395137 105395137 C A PLD4 Missense_Mutation p.S112R 0.32 tolerated(0.06) benign(0.013) TCGA-DD-AAE8-01 14 105766805 105766805 C T BRF1 Silent p.V54V 0.40 TCGA-DD-AAE8-01 14 25076373 25076373 C A GZMH Missense_Mutation p.K193N 0.14 tolerated(0.22) benign(0.053) TCGA-DD-AAE8-01 14 52534630 52534630 C A NID2 Missense_Mutation p.W160C 0.31 deleterious(0) probably_damaging(0.968) TCGA-DD-AAE8-01 15 31203039 31203039 A G FAN1 Intron 0.28 TCGA-DD-AAE8-01 15 34151797 34151797 G T RYR3 Missense_Mutation p.V4722L 0.32 benign(0.202) TCGA-DD-AAE8-01 15 41688875 41688875 C G NDUFAF1 Missense_Mutation p.R128P 0.20 deleterious(0.01) probably_damaging(0.972) TCGA-DD-AAE8-01 16 22291589 22291589 G A EEF2K Missense_Mutation p.G654S 0.37 deleterious(0.01) probably_damaging(1) TCGA-DD-AAE8-01 16 70731096 70731096 G C VAC14 Missense_Mutation p.S634C 0.06 tolerated(0.1) probably_damaging(0.997) TCGA-DD-AAE8-01 16 71317949 71317949 T C CMTR2 Silent p.L625L 0.48 TCGA-DD-AAE8-01 17 11539972 11539972 C T DNAH9 Missense_Mutation p.L553F 0.06 probably_damaging(0.941) TCGA-DD-AAE8-01 17 61514979 61514979 C T CYB561 Intron 0.21 TCGA-DD-AAE8-01 17 74383560 74383560 G A SPHK1 Missense_Mutation p.V436M 0.28 deleterious(0.01) possibly_damaging(0.8) TCGA-DD-AAE8-01 17 7577023 7577033 CTTAGTGCTCC - TP53 Frame_Shift_Del p.G302Afs*31 0.33 TCGA-DD-AAE8-01 19 37642489 37642489 T C ZNF585A 3'UTR 0.07 TCGA-DD-AAE8-01 19 41073990 41073990 A T SPTBN4 Missense_Mutation p.E2253V 0.05 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-DD-AAE8-01 19 45668161 45668161 A G TRAPPC6A Missense_Mutation p.W88R 0.34 deleterious(0) probably_damaging(1) TCGA-DD-AAE8-01 1 115400064 115400064 G A SYCP1 Splice_Site p.X80_splice 0.24 TCGA-DD-AAE8-01 1 157736740 157736740 T C FCRL2 Missense_Mutation p.D395G 0.20 tolerated(0.19) benign(0.25) TCGA-DD-AAE8-01 1 158532627 158532627 G T OR6P1 Silent p.L256L 0.16 TCGA-DD-AAE8-01 1 179638399 179638399 C T TDRD5 Missense_Mutation p.T907I 0.25 tolerated(1) benign(0.001) TCGA-DD-AAE8-01 1 186024715 186024715 G T HMCN1 Missense_Mutation p.K2351N 0.05 probably_damaging(0.953) TCGA-DD-AAE8-01 1 196977852 196977869 CATCTATGCTAAAAGTAG - CFHR5 3'UTR 0.31 TCGA-DD-AAE8-01 1 201009074 201009074 C G CACNA1S Missense_Mutation p.R1836P 0.37 deleterious_low_confidence(0) benign(0.401) TCGA-DD-AAE8-01 1 201869293 201869293 T C LMOD1 Missense_Mutation p.K283R 0.13 benign(0.002) TCGA-DD-AAE8-01 1 26663754 26663754 A G AIM1L Missense_Mutation p.V380A 0.06 tolerated(0.06) possibly_damaging(0.454) TCGA-DD-AAE8-01 1 95710350 95710350 T G RWDD3 Intron 0.30 TCGA-DD-AAE8-01 20 16554058 16554058 T G KIF16B 5'UTR 0.05 TCGA-DD-AAE8-01 20 45002045 45002045 A T ELMO2 Missense_Mutation p.F470Y 0.21 deleterious(0.04) possibly_damaging(0.838) TCGA-DD-AAE8-01 21 46314957 46314957 G T ITGB2 Missense_Mutation p.P338T 0.16 deleterious(0.02) possibly_damaging(0.868) TCGA-DD-AAE8-01 21 46841325 46841325 T G COL18A1-AS1 RNA 0.08 TCGA-DD-AAE8-01 22 41621896 41621896 C A L3MBTL2 Missense_Mutation p.F485L 0.07 tolerated(0.23) possibly_damaging(0.481) TCGA-DD-AAE8-01 22 41973917 41973917 G A PMM1 Silent p.I187I 0.17 TCGA-DD-AAE8-01 2 102501674 102501674 G A MAP4K4 Silent p.L1037L 0.22 TCGA-DD-AAE8-01 2 112560035 112560035 G - ANAPC1 Frame_Shift_Del p.F1398Lfs*2 0.25 TCGA-DD-AAE8-01 2 168986082 168986082 C A STK39 Missense_Mutation p.R353I 0.27 tolerated(0.22) benign(0.067) TCGA-DD-AAE8-01 2 217293425 217293425 A C SMARCAL1 Silent p.P418P 0.22 TCGA-DD-AAE8-01 2 50318473 50318473 G A NRXN1 Missense_Mutation p.R1276C 0.11 deleterious(0) probably_damaging(0.987) TCGA-DD-AAE8-01 2 50765499 50765499 G T NRXN1 Missense_Mutation p.P719T 0.26 tolerated(0.05) benign(0.381) TCGA-DD-AAE8-01 2 61245538 61245538 G C PEX13 Intron 0.33 TCGA-DD-AAE8-01 2 74726555 74726555 G A LBX2 Intron 0.07 TCGA-DD-AAE8-01 2 87085479 87085479 T A CD8B Missense_Mutation p.K35M 0.33 tolerated(0.06) benign(0.045) TCGA-DD-AAE8-01 2 99012463 99012463 G A CNGA3 Missense_Mutation p.R277H 0.08 deleterious(0) probably_damaging(0.999) TCGA-DD-AAE8-01 3 121305241 121305241 C T ARGFX Missense_Mutation p.H248Y 0.26 tolerated(0.27) benign(0.003) TCGA-DD-AAE8-01 3 125752500 125752500 C T SLC41A3 Missense_Mutation p.D135N 0.23 tolerated(0.26) benign(0.139) TCGA-DD-AAE8-01 3 134968201 134968201 G A EPHB1 Missense_Mutation p.R905H 0.07 tolerated(0.16) benign(0.028) TCGA-DD-AAE8-01 3 195102681 195102681 T C ACAP2 Missense_Mutation p.N61S 0.34 tolerated(1) benign(0.006) TCGA-DD-AAE8-01 3 195474197 195474197 G A MUC4 Silent p.S5363S 0.06 TCGA-DD-AAE8-01 3 44442703 44442703 A T TCAIM Missense_Mutation p.Y376F 0.23 tolerated(0.7) benign(0.005) TCGA-DD-AAE8-01 4 113435720 113435720 T A NEUROG2 3'UTR 0.33 TCGA-DD-AAE8-01 4 155157584 155157584 G T DCHS2 Silent p.V2285V 0.44 TCGA-DD-AAE8-01 4 3318452 3318452 T A RGS12 Missense_Mutation p.S185R 0.19 tolerated(0.16) benign(0.004) TCGA-DD-AAE8-01 4 69179827 69179827 T G YTHDC1 Missense_Mutation p.Y725S 0.33 deleterious_low_confidence(0) unknown(0) TCGA-DD-AAE8-01 4 74272394 74272394 T G ALB Missense_Mutation p.D62E 0.26 tolerated(1) benign(0.001) TCGA-DD-AAE8-01 5 135551937 135551937 T C TRPC7 Silent p.R790R 0.22 TCGA-DD-AAE8-01 5 3599701 3599701 C G IRX1 Missense_Mutation p.D213E 0.27 tolerated(0.61) benign(0.001) TCGA-DD-AAE8-01 5 99871534 99871534 C T FAM174A Silent p.A100A 0.33 TCGA-DD-AAE8-01 6 109484145 109484145 G A CEP57L1 Missense_Mutation p.R452K 0.28 tolerated(1) possibly_damaging(0.529) TCGA-DD-AAE8-01 6 117589516 117589516 T A VGLL2 Missense_Mutation p.C85S 0.04 deleterious(0) probably_damaging(0.999) TCGA-DD-AAE8-01 6 121563446 121563446 A G TBC1D32 Silent p.H686H 0.09 TCGA-DD-AAE8-01 6 151107580 151107580 G T PLEKHG1 Missense_Mutation p.E189D 0.06 tolerated(0.14) benign(0.262) TCGA-DD-AAE8-01 6 31627264 31627264 A G C6orf47 Missense_Mutation p.L154P 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DD-AAE8-01 6 47681900 47681900 T C GPR115 Silent p.L307L 0.08 TCGA-DD-AAE8-01 6 57244762 57244762 G T PRIM2 Nonsense_Mutation p.G175* 0.09 TCGA-DD-AAE8-01 6 75947596 75947596 C A COX7A2 3'UTR 0.19 TCGA-DD-AAE8-01 6 82941527 82941527 T C IBTK Missense_Mutation p.T151A 0.31 tolerated(0.2) benign(0.11) TCGA-DD-AAE8-01 6 89793582 89793582 A C PNRC1 Missense_Mutation p.K217N 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AAE8-01 7 106799922 106799922 T C PRKAR2B Silent p.L384L 0.10 TCGA-DD-AAE8-01 7 107605124 107605124 G A LAMB1 Missense_Mutation p.A524V 0.33 tolerated(0.29) benign(0.067) TCGA-DD-AAE8-01 7 74114378 74114378 C T GTF2I Intron 0.25 TCGA-DD-AAE8-01 7 77649121 77649121 G T MAGI2 Missense_Mutation p.D1293E 0.05 tolerated(0.87) probably_damaging(0.964) TCGA-DD-AAE8-01 7 99128958 99128958 C T ZKSCAN5 Missense_Mutation p.P536S 0.22 tolerated(0.79) benign(0.003) TCGA-DD-AAE8-01 8 143623714 143623714 G A BAI1 Silent p.P1373P 0.09 TCGA-DD-AAE8-01 8 30695229 30695229 C A TEX15 Silent p.G2474G 0.38 TCGA-DD-AAE8-01 8 70971011 70971011 T G PRDM14 Missense_Mutation p.K417T 0.18 tolerated(0.06) probably_damaging(0.998) TCGA-DD-AAE8-01 9 96054796 96054796 T A WNK2 Silent p.P1720P 0.09 TCGA-DD-AAE8-01 X 100808335 100808335 G C ARMCX1 Missense_Mutation p.S141T 0.63 deleterious_low_confidence(0.02) benign(0.202) TCGA-DD-AAE8-01 X 83419338 83419338 G T RPS6KA6 Missense_Mutation p.H47N 0.11 tolerated(0.45) benign(0) TCGA-DD-AAE9-01 10 100013487 100013487 A T LOXL4 Missense_Mutation p.L553H 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-DD-AAE9-01 10 103557782 103557782 T A MGEA5 Missense_Mutation p.I647F 0.52 deleterious(0.01) probably_damaging(0.998) TCGA-DD-AAE9-01 10 112327522 112327522 C T SMC3 5'UTR 0.24 TCGA-DD-AAE9-01 10 121658156 121658156 A T SEC23IP Missense_Mutation p.Q127H 0.04 tolerated(0.17) benign(0.008) TCGA-DD-AAE9-01 10 127753435 127753435 A G ADAM12 Missense_Mutation p.Y520H 0.23 deleterious(0.01) possibly_damaging(0.897) TCGA-DD-AAE9-01 10 5836921 5836921 A T GDI2 Silent p.T105T 0.49 TCGA-DD-AAE9-01 10 63958086 63958086 C G RTKN2 Missense_Mutation p.A471P 0.54 tolerated(0.1) possibly_damaging(0.866) TCGA-DD-AAE9-01 10 7217971 7217971 A G SFMBT2 Silent p.I655I 0.54 TCGA-DD-AAE9-01 10 74810812 74810812 A G P4HA1 Missense_Mutation p.M300T 0.59 deleterious(0.02) benign(0.171) TCGA-DD-AAE9-01 10 88024472 88024472 A T GRID1 Intron 0.41 TCGA-DD-AAE9-01 11 120350697 120350697 A T ARHGEF12 Missense_Mutation p.Q1265H 0.36 tolerated_low_confidence(0.2) benign(0.01) TCGA-DD-AAE9-01 11 12535004 12535004 T C PARVA Intron 0.30 TCGA-DD-AAE9-01 11 12535012 12535012 T C PARVA Intron 0.26 TCGA-DD-AAE9-01 11 32456885 32456885 C T WT1 Missense_Mutation p.D3N 0.35 deleterious_low_confidence(0.01) benign(0) TCGA-DD-AAE9-01 11 34478274 34478274 A G CAT Silent p.P322P 0.39 TCGA-DD-AAE9-01 11 43418122 43418122 A G TTC17 Intron 0.56 TCGA-DD-AAE9-01 11 57252666 57252666 G A SLC43A1 Missense_Mutation p.S528F 0.25 tolerated(0.74) possibly_damaging(0.553) TCGA-DD-AAE9-01 11 63176251 63176251 A G SLC22A9 Missense_Mutation p.I501V 0.35 tolerated(0.33) benign(0.117) TCGA-DD-AAE9-01 11 7021007 7021007 T C ZNF214 3'UTR 0.19 TCGA-DD-AAE9-01 11 82693383 82693383 T C RAB30 Missense_Mutation p.M146V 0.39 tolerated(0.08) possibly_damaging(0.578) TCGA-DD-AAE9-01 12 100043076 100043076 T - FAM71C Frame_Shift_Del p.M209Rfs*17 0.19 TCGA-DD-AAE9-01 12 123187347 123187347 G T HCAR2 Missense_Mutation p.L162I 0.19 tolerated(0.09) possibly_damaging(0.893) TCGA-DD-AAE9-01 12 124144971 124144971 T G GTF2H3 3'UTR 0.45 TCGA-DD-AAE9-01 12 32883956 32883977 GTGCTAGAATTTGTTATATTTT - DNM1L Frame_Shift_Del p.G363Afs*9 0.21 TCGA-DD-AAE9-01 12 40012907 40012907 A G ABCD2 Silent p.L171L 0.43 TCGA-DD-AAE9-01 12 40941623 40941623 T C MUC19 3'UTR 0.39 TCGA-DD-AAE9-01 12 48179583 48179583 G T HDAC7 Silent p.A886A 0.40 TCGA-DD-AAE9-01 12 52400962 52400962 C A GRASP Missense_Mutation p.D53E 0.41 tolerated(0.6) benign(0) TCGA-DD-AAE9-01 12 58019634 58019634 A G SLC26A10 3'UTR 0.22 TCGA-DD-AAE9-01 12 66742927 66742927 G T GRIP1 Missense_Mutation p.L1035M 0.43 deleterious(0.03) possibly_damaging(0.771) TCGA-DD-AAE9-01 12 79837902 79837902 G T SYT1 Missense_Mutation p.K326N 0.33 deleterious(0) probably_damaging(1) TCGA-DD-AAE9-01 12 80707277 80707277 A G OTOGL Missense_Mutation p.K1149E 0.36 tolerated(0.07) probably_damaging(0.999) TCGA-DD-AAE9-01 12 8612284 8612284 A G CLEC6A Silent p.T71T 0.29 TCGA-DD-AAE9-01 12 96360166 96360166 C G AMDHD1 Missense_Mutation p.S358C 0.32 deleterious(0) probably_damaging(0.98) TCGA-DD-AAE9-01 12 97885709 97885709 G A MIR1251 RNA 0.36 TCGA-DD-AAE9-01 13 27255212 27255212 G A WASF3 Silent p.T246T 0.39 TCGA-DD-AAE9-01 13 39265017 39265018 - C FREM2 Frame_Shift_Ins p.I1181Hfs*8 0.27 TCGA-DD-AAE9-01 13 78214917 78214917 A T SCEL Nonsense_Mutation p.K649* 0.34 TCGA-DD-AAE9-01 14 103399961 103399961 T G CDC42BPB 3'UTR 0.47 TCGA-DD-AAE9-01 14 20847196 20847196 G C TEP1 Silent p.L1732L 0.26 TCGA-DD-AAE9-01 14 21162046 21162046 A T ANG Missense_Mutation p.H108L 0.27 tolerated(0.55) benign(0.002) TCGA-DD-AAE9-01 14 21790033 21790033 G A RPGRIP1 Missense_Mutation p.M544I 0.30 tolerated(0.07) benign(0.005) TCGA-DD-AAE9-01 14 21790034 21790034 A T RPGRIP1 Missense_Mutation p.T545S 0.29 tolerated(0.11) benign(0.176) TCGA-DD-AAE9-01 14 23568171 23568171 G T C14orf119 3'UTR 0.24 TCGA-DD-AAE9-01 14 25325147 25325147 A G STXBP6 Missense_Mutation p.M149T 0.24 tolerated(0.27) benign(0.013) TCGA-DD-AAE9-01 14 29236383 29236383 C A FOXG1 5'UTR 0.58 TCGA-DD-AAE9-01 14 68257468 68257468 T A ZFYVE26 Missense_Mutation p.K859M 0.44 deleterious(0.04) possibly_damaging(0.855) TCGA-DD-AAE9-01 14 88945839 88945839 C A PTPN21 Missense_Mutation p.G646C 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.758) TCGA-DD-AAE9-01 14 89336480 89336480 C G TTC8 Missense_Mutation p.I329M 0.39 deleterious(0.03) probably_damaging(0.991) TCGA-DD-AAE9-01 15 78305207 78305207 G T TBC1D2B Missense_Mutation p.S743Y 0.81 deleterious(0) probably_damaging(1) TCGA-DD-AAE9-01 16 2867809 2867809 C A PRSS21 Nonsense_Mutation p.C33* 0.11 TCGA-DD-AAE9-01 16 30964577 30964577 C T ORAI3 Silent p.A100A 0.10 TCGA-DD-AAE9-01 16 56977416 56977416 T C HERPUD1 3'UTR 0.40 TCGA-DD-AAE9-01 16 61760777 61760777 A T CDH8 Intron 0.33 TCGA-DD-AAE9-01 16 7726804 7726804 A T RBFOX1 Missense_Mutation p.Q341L 0.51 deleterious(0.01) possibly_damaging(0.547) TCGA-DD-AAE9-01 17 29586118 29586118 T A NF1 Missense_Mutation p.F1467L 0.05 deleterious(0.04) benign(0.081) TCGA-DD-AAE9-01 17 36666304 36666304 A G ARHGAP23 Missense_Mutation p.D1191G 0.22 deleterious(0) probably_damaging(0.981) TCGA-DD-AAE9-01 17 41063257 41063257 C G G6PC Silent p.L296L 0.29 TCGA-DD-AAE9-01 17 60742244 60742244 C T MRC2 Nonsense_Mutation p.Q152* 0.38 TCGA-DD-AAE9-01 17 7193784 7193784 C T YBX2 Missense_Mutation p.R177Q 0.28 deleterious(0.01) benign(0.238) TCGA-DD-AAE9-01 17 7366504 7366504 A C ZBTB4 Silent p.P599P 0.32 TCGA-DD-AAE9-01 18 21948322 21948322 T C OSBPL1A Missense_Mutation p.N46D 0.35 deleterious(0.02) possibly_damaging(0.842) TCGA-DD-AAE9-01 19 11660435 11660435 C T CNN1 Missense_Mutation p.T240M 0.34 tolerated(0.09) benign(0.019) TCGA-DD-AAE9-01 19 1231033 1231033 A G C19orf26 Silent p.P407P 0.46 TCGA-DD-AAE9-01 19 13056740 13056740 C T RAD23A 5'UTR 0.57 TCGA-DD-AAE9-01 19 39055621 39055621 T A RYR1 Missense_Mutation p.F4216Y 0.39 benign(0.043) TCGA-DD-AAE9-01 19 43268178 43268178 A G PSG8 Missense_Mutation p.L107P 0.31 deleterious(0) probably_damaging(1) TCGA-DD-AAE9-01 19 44419099 44419099 G A ZNF45 Silent p.P163P 0.36 TCGA-DD-AAE9-01 19 48221838 48221838 G A EHD2 Silent p.S159S 0.41 TCGA-DD-AAE9-01 19 50902183 50902183 T C POLD1 Silent p.D25D 0.26 TCGA-DD-AAE9-01 19 55592156 55592156 A T EPS8L1 Missense_Mutation p.E149V 0.44 deleterious(0) probably_damaging(0.98) TCGA-DD-AAE9-01 1 120839624 120839624 G A FAM72B 5'UTR 0.07 TCGA-DD-AAE9-01 1 148932856 148932856 C A RP11-14N7.2 RNA 0.20 TCGA-DD-AAE9-01 1 148932857 148932857 C A RP11-14N7.2 RNA 0.21 TCGA-DD-AAE9-01 1 153743174 153743174 C T INTS3 Silent p.A839A 0.37 TCGA-DD-AAE9-01 1 156899104 156899104 G C LRRC71 Silent p.T343T 0.12 TCGA-DD-AAE9-01 1 17981137 17981137 G T ARHGEF10L Missense_Mutation p.A801S 0.73 tolerated(0.07) benign(0.06) TCGA-DD-AAE9-01 1 205042847 205042847 C T CNTN2 Missense_Mutation p.S1026F 0.09 deleterious_low_confidence(0.01) benign(0.068) TCGA-DD-AAE9-01 1 205052921 205052921 A - TMEM81 Frame_Shift_Del p.F176Lfs*3 0.27 TCGA-DD-AAE9-01 1 206319173 206319173 T C CTSE Missense_Mutation p.S100P 0.41 deleterious(0.02) possibly_damaging(0.51) TCGA-DD-AAE9-01 1 210010380 210010380 G A DIEXF Missense_Mutation p.E296K 0.47 deleterious(0.01) benign(0.094) TCGA-DD-AAE9-01 1 22158249 22158249 T C HSPG2 Missense_Mutation p.T3750A 0.76 benign(0.124) TCGA-DD-AAE9-01 1 224581703 224581703 T G WDR26 Missense_Mutation p.Y596S 0.41 deleterious(0) probably_damaging(0.995) TCGA-DD-AAE9-01 1 55527047 55527047 G T PCSK9 Splice_Site p.X561_splice 0.49 TCGA-DD-AAE9-01 1 74833646 74833646 A T FPGT-TNNI3K Missense_Mutation p.K554I 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-DD-AAE9-01 20 23545571 23545571 T C CST9L 3'UTR 0.21 TCGA-DD-AAE9-01 20 43353453 43353453 A T WISP2 Missense_Mutation p.S118C 0.25 deleterious(0) possibly_damaging(0.762) TCGA-DD-AAE9-01 20 44987488 44987488 C A SLC35C2 5'UTR 0.15 TCGA-DD-AAE9-01 21 11058299 11058299 C G BAGE2 RNA 0.05 TCGA-DD-AAE9-01 21 31062249 31062249 A T GRIK1 Missense_Mutation p.S115T 0.46 tolerated(0.47) possibly_damaging(0.611) TCGA-DD-AAE9-01 21 37617730 37617730 G A DOPEY2 Missense_Mutation p.G1151E 0.34 tolerated(0.28) benign(0.01) TCGA-DD-AAE9-01 21 48064248 48064248 A T PRMT2 Missense_Mutation p.I59F 0.42 deleterious(0) benign(0.093) TCGA-DD-AAE9-01 22 37271978 37271978 C T NCF4 Missense_Mutation p.P304L 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.713) TCGA-DD-AAE9-01 22 39448773 39448773 T C APOBEC3F 3'UTR 0.27 TCGA-DD-AAE9-01 22 39448780 39448780 G C APOBEC3F 3'UTR 0.25 TCGA-DD-AAE9-01 22 42112063 42112063 A T MEI1 Missense_Mutation p.M148L 0.20 tolerated(0.1) possibly_damaging(0.743) TCGA-DD-AAE9-01 2 105696496 105696496 A T MRPS9 Missense_Mutation p.K155N 0.34 deleterious(0.02) probably_damaging(1) TCGA-DD-AAE9-01 2 163200709 163200709 A T GCA 5'UTR 0.37 TCGA-DD-AAE9-01 2 185802939 185802939 G A ZNF804A Missense_Mutation p.R939K 0.41 tolerated(1) possibly_damaging(0.899) TCGA-DD-AAE9-01 2 21234820 21234821 - G APOB Frame_Shift_Ins p.H1641Sfs*23 0.27 TCGA-DD-AAE9-01 2 231775507 231775507 A T GPR55 Silent p.A57A 0.35 TCGA-DD-AAE9-01 2 232393719 232393719 A C NMUR1 Missense_Mutation p.C5G 0.40 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-DD-AAE9-01 2 234863846 234863846 G T TRPM8 Missense_Mutation p.Q438H 0.38 deleterious(0) probably_damaging(0.997) TCGA-DD-AAE9-01 2 238672955 238672955 A G LRRFIP1 3'UTR 0.38 TCGA-DD-AAE9-01 2 3729266 3729266 C T ALLC Missense_Mutation p.A114V 0.42 tolerated(0.38) benign(0.008) TCGA-DD-AAE9-01 3 101059023 101059023 C A SENP7 Missense_Mutation p.G758V 0.26 deleterious(0) probably_damaging(1) TCGA-DD-AAE9-01 3 170744537 170744537 A - SLC2A2 5'UTR 0.17 TCGA-DD-AAE9-01 3 27763181 27763181 G T EOMES Missense_Mutation p.P202Q 0.42 tolerated(0.08) benign(0.185) TCGA-DD-AAE9-01 3 41266124 41266124 A G CTNNB1 Missense_Mutation p.T41A 0.60 deleterious(0) possibly_damaging(0.844) TCGA-DD-AAE9-01 3 48298424 48298424 G T ZNF589 Intron 0.55 TCGA-DD-AAE9-01 3 49059329 49059329 C T NDUFAF3 5'UTR 0.23 TCGA-DD-AAE9-01 3 9094837 9094837 G C SRGAP3 Silent p.S399S 0.08 TCGA-DD-AAE9-01 4 106163379 106163379 A G TET2 Intron 0.33 TCGA-DD-AAE9-01 4 13475985 13475985 G T RAB28 Missense_Mutation p.T73K 0.06 deleterious(0) possibly_damaging(0.638) TCGA-DD-AAE9-01 4 177650707 177650707 T A VEGFC Missense_Mutation p.Y114F 0.40 tolerated(0.18) probably_damaging(0.919) TCGA-DD-AAE9-01 4 40122514 40122514 A T N4BP2 Missense_Mutation p.E928V 0.38 tolerated(0.16) possibly_damaging(0.886) TCGA-DD-AAE9-01 4 69696429 69696429 A T UGT2B10 Missense_Mutation p.K473N 0.47 deleterious(0.01) possibly_damaging(0.896) TCGA-DD-AAE9-01 4 78830432 78830432 G T MRPL1 Missense_Mutation p.R228L 0.36 tolerated(0.65) benign(0.062) TCGA-DD-AAE9-01 4 79362366 79362368 TGA - FRAS1 In_Frame_Del p.D1864del 0.20 TCGA-DD-AAE9-01 4 86922032 86922032 G T ARHGAP24 3'UTR 0.19 TCGA-DD-AAE9-01 5 130938979 130938979 T C RAPGEF6 Missense_Mutation p.N61S 0.30 deleterious(0.01) benign(0.002) TCGA-DD-AAE9-01 5 13692162 13692162 A T DNAH5 Missense_Mutation p.D4602E 0.38 possibly_damaging(0.739) TCGA-DD-AAE9-01 5 140432978 140432978 G A PCDHB1 Silent p.L641L 0.38 TCGA-DD-AAE9-01 5 14687699 14687699 A G FAM105B Missense_Mutation p.K180E 0.38 tolerated(0.33) benign(0.009) TCGA-DD-AAE9-01 5 168727521 168727521 G T SLIT3 Missense_Mutation p.R65S 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-DD-AAE9-01 5 176318414 176318414 G A HK3 Silent p.Y78Y 0.50 TCGA-DD-AAE9-01 5 176930063 176930063 T A DOK3 3'Flank 0.45 TCGA-DD-AAE9-01 6 26216471 26216471 T G HIST1H2BG 3'UTR 0.19 TCGA-DD-AAE9-01 6 26413486 26413486 G T BTN3A1 Missense_Mutation p.D370Y 0.19 deleterious(0.02) benign(0.086) TCGA-DD-AAE9-01 6 29910588 29910588 A T HLA-A Missense_Mutation p.E43V 0.35 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-DD-AAE9-01 6 31122472 31122472 C A CCHCR1 Missense_Mutation p.R201L 0.74 deleterious(0) probably_damaging(0.946) TCGA-DD-AAE9-01 6 35773575 35773575 T A LHFPL5 Missense_Mutation p.L43H 0.37 deleterious(0) possibly_damaging(0.814) TCGA-DD-AAE9-01 6 39851783 39851783 G C DAAM2 Missense_Mutation p.V631L 0.14 tolerated(0.4) benign(0.11) TCGA-DD-AAE9-01 6 43419007 43419007 G A DLK2 Missense_Mutation p.P141L 0.29 deleterious(0) probably_damaging(1) TCGA-DD-AAE9-01 6 43480851 43480851 G A YIPF3 Silent p.L208L 0.21 TCGA-DD-AAE9-01 6 43589111 43589111 C G GTPBP2 3'UTR 0.37 TCGA-DD-AAE9-01 6 55145187 55145187 C G HCRTR2 Missense_Mutation p.H350Q 0.23 deleterious(0) probably_damaging(0.987) TCGA-DD-AAE9-01 6 83076070 83076070 G A TPBG 3'UTR 0.62 TCGA-DD-AAE9-01 6 96652993 96652993 G A FUT9 3'UTR 0.46 TCGA-DD-AAE9-01 7 141673562 141673562 A G TAS2R38 5'UTR 0.52 TCGA-DD-AAE9-01 7 34867102 34867102 C G NPSR1 Missense_Mutation p.L190V 0.56 tolerated(0.25) probably_damaging(0.994) TCGA-DD-AAE9-01 7 47440024 47440024 T C TNS3 Silent p.E295E 0.25 TCGA-DD-AAE9-01 7 48413971 48413971 C A ABCA13 Missense_Mutation p.Q3721K 0.22 probably_damaging(0.997) TCGA-DD-AAE9-01 8 144416922 144416922 C T TOP1MT Missense_Mutation p.G37D 0.32 tolerated(0.34) benign(0) TCGA-DD-AAE9-01 8 146068419 146068419 T G ZNF7 Missense_Mutation p.F643V 0.17 deleterious(0) probably_damaging(0.998) TCGA-DD-AAE9-01 8 146068438 146068438 T C ZNF7 Missense_Mutation p.L649P 0.16 deleterious(0) probably_damaging(1) TCGA-DD-AAE9-01 8 30706087 30706087 A G TEX15 Silent p.C149C 0.52 TCGA-DD-AAE9-01 8 43173613 43173613 G T POTEA RNA 0.72 TCGA-DD-AAE9-01 8 48840368 48840368 A G PRKDC Missense_Mutation p.I741T 0.24 possibly_damaging(0.885) TCGA-DD-AAE9-01 8 57906212 57906212 C A IMPAD1 5'UTR 0.03 TCGA-DD-AAE9-01 8 80954863 80954863 T A TPD52 Missense_Mutation p.N183Y 0.18 deleterious(0) probably_damaging(0.931) TCGA-DD-AAE9-01 8 91836943 91836943 A T NECAB1 Splice_Site p.X42_splice 0.13 TCGA-DD-AAE9-01 9 107571793 107571793 T C ABCA1 Missense_Mutation p.K1410E 0.33 tolerated(0.58) benign(0.001) TCGA-DD-AAE9-01 9 114134013 114134013 G A KIAA0368 Missense_Mutation p.A1720V 0.05 deleterious(0) probably_damaging(0.991) TCGA-DD-AAE9-01 9 114187765 114187765 A G KIAA0368 Missense_Mutation p.I561T 0.30 tolerated(0.95) benign(0.002) TCGA-DD-AAE9-01 9 125486747 125486747 G A OR1L4 Missense_Mutation p.R160H 0.29 tolerated(1) benign(0.013) TCGA-DD-AAE9-01 9 130866085 130866085 G T SLC25A25 Silent p.T238T 0.38 TCGA-DD-AAE9-01 9 136337188 136337188 C G SLC2A6 Missense_Mutation p.Q493H 0.29 deleterious(0) probably_damaging(0.992) TCGA-DD-AAE9-01 9 140075299 140075299 A G ANAPC2 Silent p.N517N 0.33 TCGA-DD-AAE9-01 9 140075345 140075345 A C ANAPC2 Missense_Mutation p.I502S 0.47 deleterious(0) probably_damaging(0.998) TCGA-DD-AAE9-01 9 77112783 77112783 G A RORB 5'UTR 0.21 TCGA-DD-AAE9-01 9 86559849 86559849 C T C9orf64 Missense_Mutation p.S218N 0.42 tolerated(0.06) benign(0.125) TCGA-DD-AAE9-01 X 129265689 129265689 T C AIFM1 Missense_Mutation p.T512A 0.84 deleterious(0.02) benign(0.001) TCGA-DD-AAE9-01 X 153005587 153005587 C G ABCD1 Silent p.G510G 0.48 TCGA-DD-AAE9-01 X 83588776 83588776 C T HDX Silent p.L605L 0.82 TCGA-DD-AAE9-01 X 83588777 83588777 A C HDX Missense_Mutation p.L605W 0.82 deleterious(0) probably_damaging(0.998) TCGA-DD-AAEA-01 10 105007216 105007216 T G RPEL1 3'UTR 0.30 TCGA-DD-AAEA-01 10 118084838 118084838 C G CCDC172 Missense_Mutation p.R35G 0.33 deleterious(0.05) probably_damaging(0.912) TCGA-DD-AAEA-01 10 13320075 13320075 T C PHYH 3'UTR 0.22 TCGA-DD-AAEA-01 10 133955475 133955475 T C JAKMIP3 Missense_Mutation p.Y509H 0.26 tolerated(0.07) probably_damaging(1) TCGA-DD-AAEA-01 10 55698674 55698674 T C PCDH15 Missense_Mutation p.N1092D 0.18 tolerated(0.32) benign(0.008) TCGA-DD-AAEA-01 10 67726454 67726454 A T CTNNA3 Silent p.I772I 0.23 TCGA-DD-AAEA-01 10 67862920 67862920 C T CTNNA3 Missense_Mutation p.D658N 0.30 tolerated(0.37) unknown(0) TCGA-DD-AAEA-01 10 70045070 70045073 CAAA - PBLD Intron 0.22 TCGA-DD-AAEA-01 10 88827833 88827833 G A GLUD1 Missense_Mutation p.T243I 0.30 deleterious(0.01) possibly_damaging(0.86) TCGA-DD-AAEA-01 10 89725276 89725276 A G PTEN 3'UTR 0.32 TCGA-DD-AAEA-01 11 105850471 105850472 - A GRIA4 3'UTR 0.30 TCGA-DD-AAEA-01 11 118243850 118243850 A G UBE4A Missense_Mutation p.I264M 0.35 tolerated(0.15) benign(0.149) TCGA-DD-AAEA-01 11 120996462 120996462 A G TECTA Missense_Mutation p.Y552C 0.34 deleterious(0) probably_damaging(0.992) TCGA-DD-AAEA-01 11 25004794 25004794 C A LUZP2 Silent p.P240P 0.34 TCGA-DD-AAEA-01 11 27721098 27721098 G A BDNF Intron 0.46 TCGA-DD-AAEA-01 11 45246226 45246226 G A PRDM11 Missense_Mutation p.D401N 0.37 tolerated_low_confidence(0.41) benign(0.017) TCGA-DD-AAEA-01 11 46897190 46897190 A T LRP4 Missense_Mutation p.L1248M 0.29 deleterious(0.01) possibly_damaging(0.625) TCGA-DD-AAEA-01 11 55419192 55419192 A G OR4S2 Silent p.V271V 0.73 TCGA-DD-AAEA-01 11 57886845 57886845 C T OR9I1 Silent p.E24E 0.26 TCGA-DD-AAEA-01 11 64070969 64070969 T C TEX40 Missense_Mutation p.M123T 0.27 tolerated(0.53) benign(0) TCGA-DD-AAEA-01 11 6651061 6651061 G T DCHS1 Missense_Mutation p.S1626Y 0.32 tolerated(1) possibly_damaging(0.625) TCGA-DD-AAEA-01 11 66616162 66616162 T C PC 3'UTR 0.36 TCGA-DD-AAEA-01 11 6662053 6662053 C A DCHS1 Silent p.V264V 0.40 TCGA-DD-AAEA-01 11 74049640 74049640 G T PGM2L1 Missense_Mutation p.P547T 0.08 deleterious(0) probably_damaging(1) TCGA-DD-AAEA-01 11 862548 862548 A G TSPAN4 Splice_Site p.X22_splice 0.31 TCGA-DD-AAEA-01 11 8667371 8667371 G T TRIM66 Missense_Mutation p.R194S 0.26 tolerated(0.14) probably_damaging(0.91) TCGA-DD-AAEA-01 12 112638561 112638561 T A HECTD4 Missense_Mutation p.E2670D 0.38 probably_damaging(0.98) TCGA-DD-AAEA-01 12 120954429 120954429 A C COQ5 Missense_Mutation p.I172S 0.27 deleterious(0) probably_damaging(0.987) TCGA-DD-AAEA-01 12 41331460 41331460 T C CNTN1 Missense_Mutation p.I400T 0.30 deleterious(0.03) probably_damaging(0.95) TCGA-DD-AAEA-01 12 51636556 51636556 A G DAZAP2 3'UTR 0.56 TCGA-DD-AAEA-01 12 53578697 53578697 G A ZNF740 Missense_Mutation p.G11D 0.11 deleterious(0.01) probably_damaging(0.931) TCGA-DD-AAEA-01 12 55846217 55846217 G T OR6C2 Missense_Mutation p.V74F 0.07 deleterious_low_confidence(0.01) benign(0.102) TCGA-DD-AAEA-01 12 55863831 55863831 A G OR6C70 Missense_Mutation p.L31P 0.26 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-DD-AAEA-01 12 56547602 56547602 T A MYL6B Intron 0.32 TCGA-DD-AAEA-01 12 85255460 85255460 C T SLC6A15 Missense_Mutation p.G715E 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-DD-AAEA-01 12 9265122 9265122 G A A2M Missense_Mutation p.S94F 0.32 tolerated(0.71) benign(0.009) TCGA-DD-AAEA-01 13 20425899 20425899 C A ZMYM5 Missense_Mutation p.W141L 0.31 deleterious_low_confidence(0.01) benign(0.133) TCGA-DD-AAEA-01 13 36822795 36822795 T C CCDC169 Missense_Mutation p.K165E 0.45 tolerated(0.25) possibly_damaging(0.827) TCGA-DD-AAEA-01 13 37583814 37583814 A G SUPT20H Missense_Mutation p.F779L 0.33 deleterious_low_confidence(0) benign(0) TCGA-DD-AAEA-01 13 41345190 41345190 G A MRPS31 Missense_Mutation p.A28V 0.56 tolerated_low_confidence(0.31) benign(0.049) TCGA-DD-AAEA-01 13 46801979 46801979 G A LRRC63 Missense_Mutation p.V140I 0.46 tolerated(1) benign(0.001) TCGA-DD-AAEA-01 13 99948232 99948232 A T GPR183 Silent p.I56I 0.27 TCGA-DD-AAEA-01 14 102029214 102029214 G C DIO3 3'UTR 0.34 TCGA-DD-AAEA-01 14 103969371 103969371 A G MARK3 Missense_Mutation p.Y690C 0.33 tolerated(0.12) probably_damaging(0.998) TCGA-DD-AAEA-01 14 34269098 34269098 G A NPAS3 Missense_Mutation p.D529N 0.33 deleterious(0.01) benign(0.019) TCGA-DD-AAEA-01 14 39868453 39868453 A G FBXO33 3'UTR 0.56 TCGA-DD-AAEA-01 14 59819293 59819293 A G DAAM1 Missense_Mutation p.H747R 0.32 tolerated(0.07) probably_damaging(0.978) TCGA-DD-AAEA-01 14 77861072 77861072 C G NOXRED1 Missense_Mutation p.V328L 0.32 tolerated(0.54) benign(0.002) TCGA-DD-AAEA-01 14 88431941 88431941 T C GALC Missense_Mutation p.Y314C 0.28 deleterious(0) probably_damaging(1) TCGA-DD-AAEA-01 14 95080836 95080836 G T SERPINA3 Missense_Mutation p.A20S 0.20 tolerated(0.26) benign(0.059) TCGA-DD-AAEA-01 15 101169703 101169703 T C ASB7 Silent p.H91H 0.23 TCGA-DD-AAEA-01 15 23889515 23889515 G T MAGEL2 Missense_Mutation p.N522K 0.27 deleterious(0) possibly_damaging(0.866) TCGA-DD-AAEA-01 15 42106909 42106909 A G MAPKBP1 Missense_Mutation p.Y387C 0.15 deleterious(0) probably_damaging(0.954) TCGA-DD-AAEA-01 15 50757317 50757317 A T USP8 Silent p.R205R 0.09 TCGA-DD-AAEA-01 15 50901794 50901794 T A TRPM7 Missense_Mutation p.K855I 0.26 deleterious(0) probably_damaging(0.995) TCGA-DD-AAEA-01 15 64422219 64422219 A G SNX1 Silent p.E304E 0.25 TCGA-DD-AAEA-01 15 67482939 67482939 T G SMAD3 3'UTR 0.19 TCGA-DD-AAEA-01 15 75890985 75890985 T C SNUPN Missense_Mutation p.Y266C 0.20 deleterious(0) probably_damaging(1) TCGA-DD-AAEA-01 15 88678352 88678352 A T NTRK3 Missense_Mutation p.F395Y 0.27 deleterious(0) probably_damaging(0.991) TCGA-DD-AAEA-01 15 91500546 91500546 G C RCCD1 Missense_Mutation p.D124H 0.32 tolerated(0.13) benign(0.24) TCGA-DD-AAEA-01 15 91835896 91835896 G T SV2B 3'UTR 0.31 TCGA-DD-AAEA-01 15 99500708 99500708 G A IGF1R 3'UTR 0.15 TCGA-DD-AAEA-01 16 24818081 24818081 A G TNRC6A Missense_Mutation p.N1506D 0.27 deleterious(0.02) benign(0.031) TCGA-DD-AAEA-01 16 27078365 27078365 G A C16orf82 RNA 0.33 TCGA-DD-AAEA-01 16 31072498 31072498 G C ZNF668 Missense_Mutation p.A607G 0.21 deleterious(0.05) possibly_damaging(0.879) TCGA-DD-AAEA-01 16 396667 396667 G T AXIN1 Missense_Mutation p.A120D 0.37 deleterious(0) probably_damaging(0.969) TCGA-DD-AAEA-01 16 46960942 46960942 C T GPT2 Missense_Mutation p.H492Y 0.26 deleterious(0.02) probably_damaging(1) TCGA-DD-AAEA-01 16 53265378 53265378 A G CHD9 Silent p.V778V 0.32 TCGA-DD-AAEA-01 16 67226146 67226146 C T E2F4 Missense_Mutation p.P6S 0.33 tolerated_low_confidence(0.68) probably_damaging(0.986) TCGA-DD-AAEA-01 16 77317701 77317701 C A ADAMTS18 3'UTR 0.26 TCGA-DD-AAEA-01 16 84075664 84075664 G A SLC38A8 Silent p.L33L 0.12 TCGA-DD-AAEA-01 16 87445967 87445967 G A ZCCHC14 Missense_Mutation p.A650V 0.24 deleterious_low_confidence(0.04) benign(0.043) TCGA-DD-AAEA-01 17 11778398 11778398 T A DNAH9 Missense_Mutation p.C3459S 0.44 benign(0.07) TCGA-DD-AAEA-01 17 27958047 27958047 C T SSH2 Missense_Mutation p.G1362R 0.37 tolerated_low_confidence(0.09) benign(0.008) TCGA-DD-AAEA-01 17 33679955 33679955 T C SLFN11 Missense_Mutation p.H709R 0.33 deleterious(0) probably_damaging(1) TCGA-DD-AAEA-01 17 34304751 34304751 T G CCL16 Missense_Mutation p.N72H 0.45 tolerated(0.07) benign(0.085) TCGA-DD-AAEA-01 17 41059553 41059553 C G G6PC Silent p.G118G 0.36 TCGA-DD-AAEA-01 17 43318781 43318781 C A FMNL1 Silent p.P455P 0.30 TCGA-DD-AAEA-01 17 45258985 45258985 G C CDC27 Missense_Mutation p.L16V 0.45 deleterious(0) probably_damaging(1) TCGA-DD-AAEA-01 17 46196470 46196470 A G SNX11 Missense_Mutation p.Y154C 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-DD-AAEA-01 17 57089748 57089748 G T TRIM37 Missense_Mutation p.S879Y 0.33 deleterious_low_confidence(0) benign(0.1) TCGA-DD-AAEA-01 17 58134607 58134613 CCACCAA - HEATR6 Frame_Shift_Del p.D625Efs*69 0.35 TCGA-DD-AAEA-01 17 61476200 61476200 G C TANC2 Missense_Mutation p.D1012H 0.43 deleterious(0) benign(0.378) TCGA-DD-AAEA-01 17 65871691 65871691 T G BPTF Intron 0.48 TCGA-DD-AAEA-01 17 67107063 67107063 T C ABCA6 Missense_Mutation p.I717M 0.27 tolerated(1) benign(0.016) TCGA-DD-AAEA-01 17 7578265 7578265 A C TP53 Missense_Mutation p.I195S 0.51 deleterious(0) probably_damaging(1) TCGA-DD-AAEA-01 17 76968304 76968304 G A LGALS3BP Missense_Mutation p.A371V 0.24 deleterious(0.04) possibly_damaging(0.886) TCGA-DD-AAEA-01 17 78184755 78184755 G T SGSH Silent p.I335I 0.27 TCGA-DD-AAEA-01 17 7984083 7984083 A C ALOX12B Missense_Mutation p.I181M 0.52 tolerated(0.2) benign(0.299) TCGA-DD-AAEA-01 18 10691266 10691266 G A PIEZO2 Missense_Mutation p.L2323F 0.36 deleterious(0) benign(0.266) TCGA-DD-AAEA-01 18 11852040 11852040 G C CHMP1B Missense_Mutation p.G177A 0.25 tolerated(0.47) benign(0.004) TCGA-DD-AAEA-01 18 2926805 2926805 T A LPIN2 Splice_Site p.X571_splice 0.19 TCGA-DD-AAEA-01 18 32886748 32886748 A G ZNF271 RNA 0.27 TCGA-DD-AAEA-01 18 44085896 44085896 T C LOXHD1 Missense_Mutation p.N817S 0.31 tolerated(0.07) probably_damaging(0.996) TCGA-DD-AAEA-01 18 53128331 53128331 T C TCF4 Missense_Mutation p.T177A 0.34 tolerated(0.7) benign(0.001) TCGA-DD-AAEA-01 18 70532098 70532098 A G NETO1 Silent p.S55S 0.27 TCGA-DD-AAEA-01 18 72186270 72186270 A G CNDP2 Missense_Mutation p.M433V 0.38 tolerated(0.06) benign(0.016) TCGA-DD-AAEA-01 19 11488770 11488784 AGTCCCCTGAGCTGT - EPOR In_Frame_Del p.Y468_D472del 0.27 TCGA-DD-AAEA-01 19 19312257 19312257 A G NR2C2AP 3'UTR 0.38 TCGA-DD-AAEA-01 19 19766404 19766404 C G ATP13A1 Missense_Mutation p.E443D 0.45 deleterious(0) probably_damaging(1) TCGA-DD-AAEA-01 19 21933647 21933647 C A ZNF100 Intron 0.42 TCGA-DD-AAEA-01 19 2227023 2227023 G A DOT1L Silent p.V1501V 0.33 TCGA-DD-AAEA-01 19 3496829 3496829 C T DOHH 5'UTR 0.39 TCGA-DD-AAEA-01 19 35551277 35551277 G T HPN Missense_Mutation p.D161Y 0.55 deleterious(0) benign(0.358) TCGA-DD-AAEA-01 19 40006592 40006592 C A SELV Missense_Mutation p.T247K 0.21 tolerated(0.08) benign(0.216) TCGA-DD-AAEA-01 19 44933829 44933829 G T ZNF229 Missense_Mutation p.P376H 0.24 deleterious(0) probably_damaging(0.988) TCGA-DD-AAEA-01 19 50984147 50984147 G T EMC10 Missense_Mutation p.E197D 0.52 tolerated(0.59) probably_damaging(0.931) TCGA-DD-AAEA-01 19 53472368 53472368 T A ZNF702P RNA 0.69 TCGA-DD-AAEA-01 19 54724954 54724954 C A LILRB3 Splice_Site p.X319_splice 0.72 TCGA-DD-AAEA-01 19 57648312 57648312 A G ZIM3 Missense_Mutation p.V57A 0.43 tolerated(0.1) probably_damaging(0.935) TCGA-DD-AAEA-01 19 5789493 5789493 C T DUS3L Missense_Mutation p.G209S 0.37 tolerated(0.7) benign(0.004) TCGA-DD-AAEA-01 19 58370623 58370623 C T ZNF587 Silent p.S281S 0.64 TCGA-DD-AAEA-01 19 7743056 7743056 T C C19orf59 Missense_Mutation p.L84P 0.34 deleterious(0) possibly_damaging(0.766) TCGA-DD-AAEA-01 19 8959675 8959675 T G MUC16 Missense_Mutation p.E14486A 0.29 benign(0.262) TCGA-DD-AAEA-01 19 8993436 8993436 G T MUC16 Missense_Mutation p.L13885M 0.05 probably_damaging(0.996) TCGA-DD-AAEA-01 1 109265059 109265059 T C FNDC7 Missense_Mutation p.M234T 0.05 tolerated(1) benign(0.001) TCGA-DD-AAEA-01 1 116206555 116206555 C T VANGL1 Missense_Mutation p.L160F 0.37 deleterious(0) probably_damaging(0.988) TCGA-DD-AAEA-01 1 1168726 1168726 G T B3GALT6 3'UTR 0.12 TCGA-DD-AAEA-01 1 150437119 150437119 A G RPRD2 Missense_Mutation p.I510V 0.35 deleterious_low_confidence(0.03) probably_damaging(0.977) TCGA-DD-AAEA-01 1 152185403 152185403 T C HRNR 3'UTR 0.20 TCGA-DD-AAEA-01 1 156902784 156902784 T C LRRC71 3'UTR 0.22 TCGA-DD-AAEA-01 1 16345754 16345754 T A HSPB7 5'Flank 0.30 TCGA-DD-AAEA-01 1 186282008 186282008 T A PRG4 Missense_Mutation p.Y1367N 0.45 unknown(0) TCGA-DD-AAEA-01 1 196648796 196648796 A G CFH Missense_Mutation p.I221M 0.25 tolerated(0.11) benign(0.032) TCGA-DD-AAEA-01 1 197521990 197521990 C A DENND1B 3'UTR 0.45 TCGA-DD-AAEA-01 1 200017315 200017315 G A NR5A2 Missense_Mutation p.R160Q 0.23 deleterious(0) probably_damaging(0.996) TCGA-DD-AAEA-01 1 206941984 206941984 G A IL10 Silent p.N178N 0.47 TCGA-DD-AAEA-01 1 207288805 207288805 G A C4BPA Missense_Mutation p.E125K 0.28 tolerated(0.29) possibly_damaging(0.761) TCGA-DD-AAEA-01 1 21048322 21048322 T A SH2D5 Missense_Mutation p.H412L 0.29 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DD-AAEA-01 1 211486345 211486345 A G RCOR3 Intron 0.19 TCGA-DD-AAEA-01 1 220440670 220440670 T C RAB3GAP2 Intron 0.42 TCGA-DD-AAEA-01 1 223568806 223568806 A G C1orf65 3'UTR 0.48 TCGA-DD-AAEA-01 1 27721062 27721062 G C GPR3 Missense_Mutation p.G254R 0.24 deleterious(0) probably_damaging(0.999) TCGA-DD-AAEA-01 1 35251615 35251615 A C GJB3 3'UTR 0.36 TCGA-DD-AAEA-01 1 35321400 35321400 T A SMIM12 Missense_Mutation p.E60V 0.31 deleterious(0) probably_damaging(0.911) TCGA-DD-AAEA-01 1 35580361 35580361 A G ZMYM1 Missense_Mutation p.Q977R 0.28 tolerated(0.16) benign(0.118) TCGA-DD-AAEA-01 1 40955271 40955271 A T ZFP69 Missense_Mutation p.K139N 0.30 tolerated(0.11) benign(0.004) TCGA-DD-AAEA-01 1 43774798 43774798 T C TIE1 Missense_Mutation p.L395P 0.29 deleterious(0) probably_damaging(0.975) TCGA-DD-AAEA-01 1 74716453 74716453 G A FPGT-TNNI3K Silent p.K225K 0.32 TCGA-DD-AAEA-01 1 8418319 8418319 G A RERE Missense_Mutation p.H1426Y 0.20 unknown(0) TCGA-DD-AAEA-01 1 91406719 91406719 T C ZNF644 Silent p.T64T 0.31 TCGA-DD-AAEA-01 20 33059320 33059320 G C ITCH Missense_Mutation p.Q564H 0.46 deleterious(0) possibly_damaging(0.891) TCGA-DD-AAEA-01 20 33095536 33095536 T C ITCH Silent p.Y883Y 0.20 TCGA-DD-AAEA-01 20 34063355 34063355 A G CEP250 Missense_Mutation p.K534E 0.29 possibly_damaging(0.72) TCGA-DD-AAEA-01 20 35533779 35533780 - A SAMHD1 Frame_Shift_Ins p.I468Dfs*2 0.15 TCGA-DD-AAEA-01 20 36641091 36641091 T G TTI1 Missense_Mutation p.E376D 0.40 deleterious(0.01) possibly_damaging(0.756) TCGA-DD-AAEA-01 20 3783772 3783772 G - CDC25B Frame_Shift_Del p.G426Afs*11 0.21 TCGA-DD-AAEA-01 20 42574579 42574579 C T TOX2 Intron 0.40 TCGA-DD-AAEA-01 20 54823965 54823965 A G MC3R Silent p.Q22Q 0.17 TCGA-DD-AAEA-01 20 54823996 54823996 G A MC3R Missense_Mutation p.A33T 0.28 tolerated(0.64) benign(0.002) TCGA-DD-AAEA-01 21 18966228 18966228 A G BTG3 3'UTR 0.38 TCGA-DD-AAEA-01 21 45479359 45479359 T - TRAPPC10 Intron 0.26 TCGA-DD-AAEA-01 22 19026131 19026131 A T DGCR2 3'UTR 0.28 TCGA-DD-AAEA-01 22 32241108 32241108 A G DEPDC5 Missense_Mutation p.Y960C 0.31 deleterious(0) probably_damaging(0.998) TCGA-DD-AAEA-01 22 41903896 41903896 G A ACO2 Missense_Mutation p.R92Q 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.802) TCGA-DD-AAEA-01 2 101014387 101014387 A G CHST10 Missense_Mutation p.V137A 0.28 deleterious(0) possibly_damaging(0.573) TCGA-DD-AAEA-01 2 128065257 128065257 G C MAP3K2 Silent p.V586V 0.28 TCGA-DD-AAEA-01 2 141812829 141812829 C A LRP1B Splice_Site p.X470_splice 0.25 TCGA-DD-AAEA-01 2 152350375 152350375 A G NEB Missense_Mutation p.Y8196H 0.31 benign(0.043) TCGA-DD-AAEA-01 2 163059608 163059608 G T FAP Nonsense_Mutation p.Y365* 0.20 TCGA-DD-AAEA-01 2 191827821 191827821 T C GLS 3'UTR 0.29 TCGA-DD-AAEA-01 2 201462122 201462122 A G AOX1 Missense_Mutation p.H68R 0.33 deleterious(0.01) possibly_damaging(0.582) TCGA-DD-AAEA-01 2 201515713 201515713 T C AOX1 Missense_Mutation p.M955T 0.26 deleterious(0) possibly_damaging(0.868) TCGA-DD-AAEA-01 2 204066340 204066340 A G NBEAL1 Missense_Mutation p.D2409G 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-DD-AAEA-01 2 26512868 26512868 A C HADHB 3'UTR 0.34 TCGA-DD-AAEA-01 2 33749508 33749508 C A RASGRP3 Missense_Mutation p.Q234K 0.35 deleterious(0.03) benign(0.089) TCGA-DD-AAEA-01 2 61441503 61441503 T C USP34 Missense_Mutation p.I2792V 0.35 tolerated(0.3) possibly_damaging(0.493) TCGA-DD-AAEA-01 2 74274165 74274165 C G TET3 Missense_Mutation p.S239C 0.37 deleterious(0.04) possibly_damaging(0.599) TCGA-DD-AAEA-01 2 75937765 75937765 T A GCFC2 Missense_Mutation p.S73C 0.47 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-DD-AAEA-01 2 85570304 85570304 G C RETSAT 3'UTR 0.28 TCGA-DD-AAEA-01 3 112253022 112253022 A G ATG3 Intron 0.23 TCGA-DD-AAEA-01 3 119209506 119209506 T C POGLUT1 Silent p.Y302Y 0.29 TCGA-DD-AAEA-01 3 126218975 126218975 T C UROC1 Missense_Mutation p.I450V 0.29 tolerated(0.1) probably_damaging(0.994) TCGA-DD-AAEA-01 3 152174105 152174105 A G MBNL1 Silent p.T355T 0.33 TCGA-DD-AAEA-01 3 152883123 152883123 A G RAP2B 3'UTR 0.37 TCGA-DD-AAEA-01 3 153909105 153909105 A G ARHGEF26 Silent p.V556V 0.28 TCGA-DD-AAEA-01 3 15736711 15736711 T C ANKRD28 Missense_Mutation p.E527G 0.31 tolerated(0.27) benign(0.09) TCGA-DD-AAEA-01 3 158415600 158415600 C T RARRES1 Missense_Mutation p.R251H 0.26 tolerated(0.99) benign(0.009) TCGA-DD-AAEA-01 3 184071906 184071907 - A CLCN2 Frame_Shift_Ins p.G569Rfs*51 0.21 TCGA-DD-AAEA-01 3 196509525 196509525 A C PAK2 Missense_Mutation p.D3A 0.26 deleterious_low_confidence(0) benign(0.06) TCGA-DD-AAEA-01 3 46586621 46586621 G C LRRC2 Missense_Mutation p.T83S 0.37 tolerated(1) benign(0) TCGA-DD-AAEA-01 3 49759883 49759883 A - GMPPB Frame_Shift_Del p.Y208Mfs*29 0.23 TCGA-DD-AAEA-01 3 58487150 58487158 GACACCAGA - KCTD6 In_Frame_Del p.T170_D172del 0.22 TCGA-DD-AAEA-01 3 69134210 69134210 T A ARL6IP5 Missense_Mutation p.N4K 0.37 tolerated(0.05) benign(0.011) TCGA-DD-AAEA-01 3 74414775 74414776 - T CNTN3 Frame_Shift_Ins p.S342Kfs*39 0.23 TCGA-DD-AAEA-01 3 87276703 87276703 G T CHMP2B Missense_Mutation p.D11Y 0.39 deleterious(0.02) benign(0.148) TCGA-DD-AAEA-01 4 106158925 106158925 A T TET2 Intron 0.53 TCGA-DD-AAEA-01 4 121720828 121720828 T A PRDM5 Missense_Mutation p.I340F 0.48 tolerated(0.59) possibly_damaging(0.904) TCGA-DD-AAEA-01 4 148555393 148555393 A G TMEM184C Silent p.L375L 0.33 TCGA-DD-AAEA-01 4 152212306 152212306 G A PRSS48 Missense_Mutation p.G230S 0.32 tolerated(0.06) probably_damaging(0.979) TCGA-DD-AAEA-01 4 155155901 155155901 C A DCHS2 Silent p.L2846L 0.23 TCGA-DD-AAEA-01 4 16077376 16077376 T C PROM1 Missense_Mutation p.I52V 0.36 tolerated(0.18) benign(0.381) TCGA-DD-AAEA-01 4 167675600 167675600 A G SPOCK3 Intron 0.27 TCGA-DD-AAEA-01 4 187004611 187004611 A G TLR3 Missense_Mutation p.I591V 0.28 tolerated(0.11) benign(0.417) TCGA-DD-AAEA-01 4 187534378 187534378 T - FAT1 Frame_Shift_Del p.D3117Mfs*2 0.29 TCGA-DD-AAEA-01 4 37591958 37591958 A G C4orf19 Missense_Mutation p.H94R 0.33 tolerated(0.66) benign(0.002) TCGA-DD-AAEA-01 4 7780488 7780488 C G AFAP1 Splice_Site p.X633_splice 0.19 TCGA-DD-AAEA-01 5 101627231 101627231 G T SLCO4C1 Silent p.G145G 0.28 TCGA-DD-AAEA-01 5 122137803 122137803 A G SNX2 Missense_Mutation p.Y162C 0.25 deleterious(0) probably_damaging(1) TCGA-DD-AAEA-01 5 125801072 125801072 C T GRAMD3 Intron 0.33 TCGA-DD-AAEA-01 5 127685084 127685084 A G FBN2 Missense_Mutation p.C982R 0.16 deleterious(0) probably_damaging(0.993) TCGA-DD-AAEA-01 5 132219082 132219082 T C AFF4 Missense_Mutation p.Y1105C 0.20 tolerated(0.12) probably_damaging(0.997) TCGA-DD-AAEA-01 5 140736599 140736599 C - PCDHGA4 Frame_Shift_Del p.S612Afs*32 0.10 TCGA-DD-AAEA-01 5 159833579 159833579 C G SLU7 Missense_Mutation p.E395Q 0.31 deleterious(0) probably_damaging(1) TCGA-DD-AAEA-01 5 161116701 161116701 G T GABRA6 Nonsense_Mutation p.E197* 0.14 TCGA-DD-AAEA-01 5 169805835 169805835 C A KCNMB1 Missense_Mutation p.R150L 0.29 deleterious(0) probably_damaging(0.964) TCGA-DD-AAEA-01 5 171638799 171638799 C T UBTD2 3'UTR 0.32 TCGA-DD-AAEA-01 5 179292917 179292917 T A TBC1D9B Intron 0.20 TCGA-DD-AAEA-01 5 40716422 40716422 T A TTC33 Missense_Mutation p.D205V 0.16 deleterious(0) probably_damaging(0.974) TCGA-DD-AAEA-01 5 41018447 41018447 A G MROH2B Missense_Mutation p.I920T 0.16 tolerated(0.29) benign(0.003) TCGA-DD-AAEA-01 5 64868010 64868010 C G PPWD1 Nonsense_Mutation p.S289* 0.08 TCGA-DD-AAEA-01 5 77714644 77714644 G T SCAMP1 Missense_Mutation p.G130V 0.24 deleterious(0.04) probably_damaging(0.969) TCGA-DD-AAEA-01 5 79747408 79747408 G T ZFYVE16 Missense_Mutation p.D1163Y 0.20 deleterious(0) probably_damaging(0.956) TCGA-DD-AAEA-01 5 79854721 79854721 G A ANKRD34B Missense_Mutation p.S373F 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-DD-AAEA-01 5 98234033 98234033 T G CHD1 Missense_Mutation p.K431T 0.23 deleterious(0) benign(0.215) TCGA-DD-AAEA-01 6 106968297 106968297 A G AIM1 Missense_Mutation p.R664G 0.26 tolerated(0.26) benign(0.002) TCGA-DD-AAEA-01 6 109935589 109935589 T A AK9 Missense_Mutation p.E498D 0.29 tolerated(0.6) benign(0.001) TCGA-DD-AAEA-01 6 116977888 116977888 G C ZUFSP Nonsense_Mutation p.S307* 0.06 TCGA-DD-AAEA-01 6 13621055 13621062 AGTAAATC - AL441883.1 Frame_Shift_Del p.L20Ffs*25 0.20 TCGA-DD-AAEA-01 6 144509135 144509135 A G STX11 3'UTR 0.33 TCGA-DD-AAEA-01 6 146264427 146264427 T C SHPRH Missense_Mutation p.K697R 0.34 tolerated(0.28) benign(0.005) TCGA-DD-AAEA-01 6 150240446 150240446 G T RAET1G Missense_Mutation p.Q122K 0.42 deleterious(0.01) probably_damaging(0.965) TCGA-DD-AAEA-01 6 160176075 160176075 T C WTAP Missense_Mutation p.I208T 0.38 deleterious(0) benign(0.292) TCGA-DD-AAEA-01 6 160448307 160448307 G C IGF2R Missense_Mutation p.G246A 0.35 deleterious(0) probably_damaging(1) TCGA-DD-AAEA-01 6 169632798 169632798 G A THBS2 Silent p.P631P 0.35 TCGA-DD-AAEA-01 6 26285638 26285638 G A HIST1H4H Silent p.I30I 0.37 TCGA-DD-AAEA-01 6 33359514 33359514 A G KIFC1 5'UTR 0.33 TCGA-DD-AAEA-01 6 52697726 52697726 G C GSTA5 Missense_Mutation p.H159Q 0.31 tolerated(0.84) benign(0.028) TCGA-DD-AAEA-01 6 70964697 70964697 C T COL9A1 Missense_Mutation p.R545H 0.30 benign(0.054) TCGA-DD-AAEA-01 6 84569458 84569458 T C CYB5R4 5'UTR 0.32 TCGA-DD-AAEA-01 7 104715215 104715215 A T KMT2E Missense_Mutation p.R228W 0.25 deleterious(0) possibly_damaging(0.675) TCGA-DD-AAEA-01 7 117424330 117424330 A G CTTNBP2 Silent p.Y749Y 0.24 TCGA-DD-AAEA-01 7 12666228 12666228 G C SCIN Missense_Mutation p.G334A 0.20 deleterious(0) benign(0.17) TCGA-DD-AAEA-01 7 138400553 138400553 G T ATP6V0A4 Missense_Mutation p.T738K 0.28 deleterious(0) probably_damaging(1) TCGA-DD-AAEA-01 7 157013403 157013403 A T UBE3C Silent p.P645P 0.21 TCGA-DD-AAEA-01 7 23545772 23545772 T C TRA2A Missense_Mutation p.Y252C 0.12 tolerated_low_confidence(0.07) unknown(0) TCGA-DD-AAEA-01 7 4249794 4249794 G C SDK1 Missense_Mutation p.G1847R 0.29 tolerated(0.14) probably_damaging(0.993) TCGA-DD-AAEA-01 7 5529345 5529345 G C FBXL18 Intron 0.21 TCGA-DD-AAEA-01 7 72848989 72848989 G A FZD9 Missense_Mutation p.G218S 0.31 tolerated(0.25) benign(0.278) TCGA-DD-AAEA-01 7 75677457 75677457 C T MDH2 5'UTR 0.15 TCGA-DD-AAEA-01 7 92730537 92730537 T C SAMD9 3'UTR 0.15 TCGA-DD-AAEA-01 8 119391939 119391939 C T SAMD12 Missense_Mutation p.G108E 0.33 deleterious(0) probably_damaging(0.941) TCGA-DD-AAEA-01 8 29035027 29035027 T C KIF13B Silent p.T263T 0.40 TCGA-DD-AAEA-01 8 42218871 42218871 A G POLB Silent p.E203E 0.31 TCGA-DD-AAEA-01 8 82606702 82606702 G C SLC10A5 Missense_Mutation p.T169R 0.35 tolerated(0.53) benign(0.176) TCGA-DD-AAEA-01 9 100431136 100431136 T C NCBP1 Silent p.D675D 0.49 TCGA-DD-AAEA-01 9 134062705 134062705 C A NUP214 Missense_Mutation p.T1150K 0.41 benign(0.024) TCGA-DD-AAEA-01 9 15423939 15423939 A T SNAPC3 Missense_Mutation p.E116V 0.06 deleterious(0.02) benign(0.04) TCGA-DD-AAEA-01 9 19076617 19076617 T C HAUS6 Missense_Mutation p.Y426C 0.34 deleterious(0) probably_damaging(0.998) TCGA-DD-AAEA-01 9 2182157 2182157 A G SMARCA2 Missense_Mutation p.H1459R 0.33 benign(0.378) TCGA-DD-AAEA-01 9 33948822 33948822 T C UBAP2 Intron 0.30 TCGA-DD-AAEA-01 9 79862174 79862174 G T VPS13A Splice_Site p.X634_splice 0.48 TCGA-DD-AAEA-01 X 100333968 100333968 G C TMEM35 5'UTR 0.07 TCGA-DD-AAEA-01 X 19051754 19051754 A G GPR64 Missense_Mutation p.I94T 0.64 tolerated_low_confidence(0.13) possibly_damaging(0.597) TCGA-DD-AAEA-01 X 36403421 36403421 A G CXorf30 3'UTR 0.67 TCGA-DD-AAEA-01 X 43571157 43571157 A G MAOA Silent p.V115V 0.56 TCGA-DD-AAEA-01 X 53421753 53421753 T C SMC1A Missense_Mutation p.Y973C 0.50 deleterious(0.01) benign(0.187) TCGA-DD-AAEA-01 X 65238783 65238783 A G VSIG4 3'Flank 0.68 TCGA-DD-AAEB-01 10 102114194 102114194 A G SCD Missense_Mutation p.Y151C 0.35 deleterious(0) probably_damaging(0.925) TCGA-DD-AAEB-01 10 104620107 104620107 C A C10orf32 Silent p.R54R 0.45 TCGA-DD-AAEB-01 10 106019401 106019401 C G GSTO1 Missense_Mutation p.L71V 0.41 deleterious(0.01) benign(0.414) TCGA-DD-AAEB-01 10 134705879 134705879 C T TTC40 Missense_Mutation p.D1088N 0.49 tolerated(0.06) probably_damaging(0.995) TCGA-DD-AAEB-01 10 45602743 45602743 G A RSU1P2 RNA 0.40 TCGA-DD-AAEB-01 10 48413718 48413718 A G GDF2 Missense_Mutation p.F384L 0.37 tolerated(0.12) benign(0.151) TCGA-DD-AAEB-01 10 50014124 50014124 G A WDFY4 Silent p.L1574L 0.32 TCGA-DD-AAEB-01 10 73466828 73466828 A T C10orf105 3'Flank 0.39 TCGA-DD-AAEB-01 10 74100799 74100799 G A DNAJB12 Missense_Mutation p.A230V 0.38 deleterious(0.03) benign(0.331) TCGA-DD-AAEB-01 10 88729937 88729937 G A ADIRF Intron 0.05 TCGA-DD-AAEB-01 10 96798766 96798766 G - CYP2C8 Frame_Shift_Del p.V394Cfs*20 0.22 TCGA-DD-AAEB-01 10 99437618 99437618 T A AVPI1 3'UTR 0.42 TCGA-DD-AAEB-01 11 10819234 10819234 A C EIF4G2 3'UTR 0.40 TCGA-DD-AAEB-01 11 117375715 117375715 G A DSCAML1 Silent p.I762I 0.38 TCGA-DD-AAEB-01 11 55406437 55406437 G T OR4P4 Missense_Mutation p.G202C 0.36 deleterious(0) probably_damaging(0.999) TCGA-DD-AAEB-01 11 56143638 56143638 A G OR8U1 Missense_Mutation p.D180G 0.10 deleterious(0) probably_damaging(1) TCGA-DD-AAEB-01 11 56185036 56185036 T C OR5R1 Missense_Mutation p.I225V 0.40 deleterious(0.02) benign(0.036) TCGA-DD-AAEB-01 11 57507768 57507768 A G TMX2 3'UTR 0.53 TCGA-DD-AAEB-01 11 70033927 70033927 G T ANO1 Missense_Mutation p.E926D 0.40 deleterious(0.02) probably_damaging(0.998) TCGA-DD-AAEB-01 11 76867076 76867076 A T MYO7A Missense_Mutation p.I137F 0.55 deleterious(0) possibly_damaging(0.51) TCGA-DD-AAEB-01 11 82536148 82536148 G T PRCP Missense_Mutation p.P452T 0.34 deleterious(0) probably_damaging(1) TCGA-DD-AAEB-01 12 100551078 100551078 T C AC010203.1 RNA 0.43 TCGA-DD-AAEB-01 12 109051082 109051082 G T CORO1C Missense_Mutation p.P250T 0.28 tolerated(0.22) benign(0.027) TCGA-DD-AAEB-01 12 109051083 109051083 A T CORO1C Missense_Mutation p.N249K 0.28 tolerated(0.08) benign(0.004) TCGA-DD-AAEB-01 12 113909489 113909489 T A LHX5 5'UTR 0.62 TCGA-DD-AAEB-01 12 301686 301686 G T SLC6A12 Missense_Mutation p.F553L 0.45 tolerated(0.11) benign(0.174) TCGA-DD-AAEB-01 12 56713218 56713225 GGCATCGA - PAN2 Frame_Shift_Del p.L1050Qfs*22 0.24 TCGA-DD-AAEB-01 12 57107416 57107416 T C NACA Missense_Mutation p.I806V 0.36 deleterious_low_confidence(0.02) benign(0.162) TCGA-DD-AAEB-01 12 57482916 57482916 C A NAB2 5'UTR 0.65 TCGA-DD-AAEB-01 12 6933886 6933886 C T GPR162 Silent p.S274S 0.41 TCGA-DD-AAEB-01 12 74933919 74933919 C G ATXN7L3B 3'UTR 0.32 TCGA-DD-AAEB-01 12 75875684 75875684 G A GLIPR1 Missense_Mutation p.R82Q 0.35 tolerated(0.64) benign(0.001) TCGA-DD-AAEB-01 12 79611325 79611325 C G SYT1 Missense_Mutation p.A9G 0.28 tolerated(0.13) benign(0.001) TCGA-DD-AAEB-01 12 80933562 80933562 C T PTPRQ Missense_Mutation p.T994I 0.39 deleterious(0.02) benign(0.115) TCGA-DD-AAEB-01 12 85518023 85518023 C T LRRIQ1 Nonsense_Mutation p.Q1245* 0.41 TCGA-DD-AAEB-01 12 90035972 90035972 G C ATP2B1 Silent p.G123G 0.36 TCGA-DD-AAEB-01 13 103498569 103498569 A C ERCC5 5'UTR 0.39 TCGA-DD-AAEB-01 13 114778624 114778624 G T RASA3 Missense_Mutation p.H502Q 0.31 tolerated(0.1) benign(0.033) TCGA-DD-AAEB-01 13 39588204 39588204 T G PROSER1 Silent p.A395A 0.34 TCGA-DD-AAEB-01 13 39613820 39613820 A G NHLRC3 Silent p.Q119Q 0.34 TCGA-DD-AAEB-01 13 50588307 50588307 A G TRIM13 3'Flank 0.41 TCGA-DD-AAEB-01 14 105945139 105945139 C T CRIP2 Missense_Mutation p.P164S 0.21 tolerated(0.07) possibly_damaging(0.84) TCGA-DD-AAEB-01 14 72055563 72055563 G T SIPA1L1 Missense_Mutation p.W325L 0.36 tolerated(0.11) probably_damaging(0.986) TCGA-DD-AAEB-01 14 88477151 88477151 T C GPR65 5'UTR 0.44 TCGA-DD-AAEB-01 15 23931788 23931788 T G NDN Missense_Mutation p.M193L 0.43 tolerated(0.06) benign(0.019) TCGA-DD-AAEB-01 15 31362098 31362098 G A TRPM1 Intron 0.30 TCGA-DD-AAEB-01 15 63632570 63632570 G A CA12 Missense_Mutation p.R222W 0.04 deleterious(0) possibly_damaging(0.567) TCGA-DD-AAEB-01 15 63881201 63881201 A G USP3 Missense_Mutation p.H463R 0.37 deleterious(0) benign(0.093) TCGA-DD-AAEB-01 15 74703257 74703257 G A SEMA7A Missense_Mutation p.S570F 0.44 deleterious(0) probably_damaging(1) TCGA-DD-AAEB-01 15 85438898 85438898 G C SLC28A1 Intron 0.55 TCGA-DD-AAEB-01 15 91548981 91548981 T C VPS33B Missense_Mutation p.N325D 0.37 tolerated(0.29) benign(0.006) TCGA-DD-AAEB-01 16 1859212 1859212 G C HAGH 3'UTR 0.17 TCGA-DD-AAEB-01 16 2011585 2011585 T A NDUFB10 Nonsense_Mutation p.C119* 0.43 TCGA-DD-AAEB-01 16 2011586 2011586 A T NDUFB10 Missense_Mutation p.I120F 0.43 deleterious(0.01) benign(0.068) TCGA-DD-AAEB-01 16 21698947 21698947 C T OTOA Missense_Mutation p.R205C 0.39 tolerated(0.08) benign(0.001) TCGA-DD-AAEB-01 16 5135558 5135558 C T FAM86A 3'UTR 0.36 TCGA-DD-AAEB-01 16 54318534 54318534 G C IRX3 Missense_Mutation p.P420R 0.73 tolerated(0.07) possibly_damaging(0.804) TCGA-DD-AAEB-01 16 67313942 67313942 G A PLEKHG4 5'UTR 0.38 TCGA-DD-AAEB-01 16 68023228 68023228 G T DPEP2 Silent p.G356G 0.49 TCGA-DD-AAEB-01 16 89799791 89799791 C T ZNF276 Silent p.P417P 0.46 TCGA-DD-AAEB-01 17 27086796 27086796 T C FAM222B Missense_Mutation p.I61V 0.31 deleterious(0) possibly_damaging(0.658) TCGA-DD-AAEB-01 17 28791960 28791960 A G CPD 3'UTR 0.40 TCGA-DD-AAEB-01 17 57743863 57743863 A G CLTC Missense_Mutation p.N602S 0.39 deleterious(0.04) probably_damaging(0.979) TCGA-DD-AAEB-01 18 33559161 33559161 A - C18orf21 3'UTR 0.31 TCGA-DD-AAEB-01 18 43490657 43490657 T C EPG5 Missense_Mutation p.H1345R 0.34 deleterious(0.01) probably_damaging(0.923) TCGA-DD-AAEB-01 19 16764845 16764845 C T SMIM7 Splice_Site p.X71_splice 0.40 TCGA-DD-AAEB-01 19 18170871 18170871 C A IL12RB1 Missense_Mutation p.D606Y 0.37 deleterious(0) probably_damaging(0.982) TCGA-DD-AAEB-01 19 36216413 36216413 C T KMT2B Missense_Mutation p.H1226Y 0.38 benign(0.346) TCGA-DD-AAEB-01 19 38126047 38126047 G A ZFP30 Silent p.P465P 0.47 TCGA-DD-AAEB-01 19 41116482 41116482 C T LTBP4 Missense_Mutation p.R644C 0.47 deleterious(0) probably_damaging(0.991) TCGA-DD-AAEB-01 19 41306750 41306750 G A EGLN2 Silent p.L91L 0.07 TCGA-DD-AAEB-01 19 42731490 42731490 T G ZNF526 3'UTR 0.40 TCGA-DD-AAEB-01 19 42731506 42731506 T G ZNF526 3'UTR 0.40 TCGA-DD-AAEB-01 19 44661040 44661040 G A ZNF234 Missense_Mutation p.D291N 0.37 tolerated(0.12) benign(0.168) TCGA-DD-AAEB-01 19 54313913 54313913 G A NLRP12 Missense_Mutation p.P334S 0.37 deleterious(0.01) probably_damaging(0.993) TCGA-DD-AAEB-01 1 108247593 108247593 C G VAV3 Missense_Mutation p.Q531H 0.48 tolerated(0.46) benign(0.003) TCGA-DD-AAEB-01 1 145209119 145209119 G C RP11-458D21.5 5'Flank 0.10 TCGA-DD-AAEB-01 1 162769552 162769570 TCCTCTGTCACAGTGACAA - HSD17B7 Frame_Shift_Del p.L157Hfs*41 0.24 TCGA-DD-AAEB-01 1 17022987 17022987 C T ESPNP RNA 0.16 TCGA-DD-AAEB-01 1 17022988 17022988 G T ESPNP RNA 0.15 TCGA-DD-AAEB-01 1 19630804 19630805 - C AKR7A2 Frame_Shift_Ins p.E332Gfs*13 0.18 TCGA-DD-AAEB-01 1 19630807 19630808 - TCCG AKR7A2 Frame_Shift_Ins p.E331Afs*15 0.16 TCGA-DD-AAEB-01 1 204588798 204588798 G A LRRN2 Missense_Mutation p.A108V 0.27 tolerated(1) benign(0.004) TCGA-DD-AAEB-01 1 236973846 236973846 G T MTR Missense_Mutation p.K151N 0.64 deleterious(0) probably_damaging(0.936) TCGA-DD-AAEB-01 1 243777036 243777036 C A AKT3 Missense_Mutation p.L211F 0.28 deleterious(0) probably_damaging(0.974) TCGA-DD-AAEB-01 1 247752346 247752346 T A OR2G2 Missense_Mutation p.L229M 0.28 tolerated(0.1) probably_damaging(0.995) TCGA-DD-AAEB-01 1 32672166 32672166 G - IQCC Frame_Shift_Del p.L163Cfs*21 0.29 TCGA-DD-AAEB-01 1 32796502 32796502 C A HDAC1 Silent p.I324I 0.46 TCGA-DD-AAEB-01 1 34643459 34643459 G C C1orf94 Missense_Mutation p.R23S 0.35 tolerated_low_confidence(0.17) benign(0.037) TCGA-DD-AAEB-01 1 47717254 47717254 C A STIL Nonsense_Mutation p.E1141* 0.45 TCGA-DD-AAEB-01 1 47717255 47717255 C T STIL Silent p.E1140E 0.44 TCGA-DD-AAEB-01 20 35563535 35563535 T A SAMHD1 Missense_Mutation p.I136F 0.43 deleterious(0) probably_damaging(0.985) TCGA-DD-AAEB-01 21 32638770 32638770 T A TIAM1 Silent p.A173A 0.40 TCGA-DD-AAEB-01 21 45217260 45217260 G T RRP1 Intron 0.32 TCGA-DD-AAEB-01 21 45217261 45217261 C T RRP1 Intron 0.32 TCGA-DD-AAEB-01 22 30144469 30144469 T C ZMAT5 Missense_Mutation p.K22R 0.38 deleterious(0) probably_damaging(1) TCGA-DD-AAEB-01 22 38202326 38202326 A G H1F0 3'UTR 0.51 TCGA-DD-AAEB-01 22 43227599 43227599 G C ARFGAP3 Missense_Mutation p.S174C 0.48 tolerated(0.08) benign(0.008) TCGA-DD-AAEB-01 2 161052880 161052880 G A ITGB6 Missense_Mutation p.L65F 0.33 deleterious(0) probably_damaging(1) TCGA-DD-AAEB-01 2 179456870 179456870 T C TTN Missense_Mutation p.S19921G 0.39 TCGA-DD-AAEB-01 2 182542334 182542334 A G NEUROD1 3'UTR 0.58 TCGA-DD-AAEB-01 2 206991519 206991519 C A NDUFS1 Missense_Mutation p.R659I 0.39 deleterious(0) probably_damaging(0.94) TCGA-DD-AAEB-01 2 220422328 220422328 C A OBSL1 Missense_Mutation p.R1268L 0.23 tolerated(0.34) possibly_damaging(0.574) TCGA-DD-AAEB-01 2 234296942 234296942 T G DGKD Missense_Mutation p.S66A 0.03 deleterious(0) probably_damaging(0.983) TCGA-DD-AAEB-01 2 239092696 239092697 - T ILKAP Frame_Shift_Ins p.H197Qfs*3 0.20 TCGA-DD-AAEB-01 2 30993238 30993238 C T CAPN13 Silent p.V155V 0.36 TCGA-DD-AAEB-01 2 38523047 38523047 T C ATL2 3'UTR 0.14 TCGA-DD-AAEB-01 2 55056571 55056571 A G EML6 Silent p.P268P 0.30 TCGA-DD-AAEB-01 2 5838662 5838662 C T SOX11 3'UTR 0.44 TCGA-DD-AAEB-01 2 70106092 70106092 A G GMCL1 Missense_Mutation p.I502V 0.38 tolerated(0.54) benign(0.006) TCGA-DD-AAEB-01 2 85843290 85843290 T A USP39 5'Flank 0.38 TCGA-DD-AAEB-01 3 102175181 102175181 C A ZPLD1 Missense_Mutation p.P174T 0.46 deleterious(0) probably_damaging(0.995) TCGA-DD-AAEB-01 3 10384457 10384457 T C ATP2B2 Missense_Mutation p.I966V 0.47 tolerated(0.19) benign(0.073) TCGA-DD-AAEB-01 3 127294839 127294839 T C TPRA1 Missense_Mutation p.I185V 0.39 tolerated(0.44) benign(0.027) TCGA-DD-AAEB-01 3 127441310 127441310 T C MGLL Missense_Mutation p.Y121C 0.41 deleterious(0.01) probably_damaging(0.933) TCGA-DD-AAEB-01 3 127540591 127540591 T G MGLL Missense_Mutation p.N34T 0.35 deleterious(0) probably_damaging(0.983) TCGA-DD-AAEB-01 3 127785873 127785873 A G SEC61A1 Missense_Mutation p.Y285C 0.36 deleterious(0.02) probably_damaging(1) TCGA-DD-AAEB-01 3 130743203 130743232 GACATAAGTACCACACTGGAAGAAGTCCTG - ASTE1 In_Frame_Del p.Q307_V316del 0.26 TCGA-DD-AAEB-01 3 132413781 132413781 T C NPHP3 Missense_Mutation p.I734V 0.34 tolerated(0.56) benign(0) TCGA-DD-AAEB-01 3 151105931 151105931 C T MED12L Missense_Mutation p.R1773C 0.42 deleterious(0) probably_damaging(0.995) TCGA-DD-AAEB-01 3 185970881 185970883 CCT - DGKG Splice_Site p.X533_splice 0.27 TCGA-DD-AAEB-01 3 186459957 186459957 T A KNG1 Missense_Mutation p.I591N 0.42 deleterious(0) probably_damaging(0.915) TCGA-DD-AAEB-01 3 19554546 19554546 G T KCNH8 Nonsense_Mutation p.E722* 0.40 TCGA-DD-AAEB-01 3 196199524 196199524 T C RNF168 Missense_Mutation p.I294M 0.34 tolerated(0.24) benign(0.003) TCGA-DD-AAEB-01 3 196199527 196199527 T G RNF168 Silent p.S293S 0.35 TCGA-DD-AAEB-01 3 37583948 37583948 A - ITGA9 Frame_Shift_Del p.K522Rfs*27 0.29 TCGA-DD-AAEB-01 3 41266101 41266101 C G CTNNB1 Missense_Mutation p.S33C 0.34 deleterious(0) probably_damaging(0.987) TCGA-DD-AAEB-01 3 44449133 44449133 T C TCAIM Missense_Mutation p.C484R 0.35 deleterious(0) possibly_damaging(0.884) TCGA-DD-AAEB-01 3 47084191 47084191 C A SETD2 Splice_Site p.X2367_splice 0.36 TCGA-DD-AAEB-01 3 49691179 49691179 A G BSN Missense_Mutation p.Y1397C 0.30 unknown(0) TCGA-DD-AAEB-01 3 5229385 5229385 G C AC026202.1 Missense_Mutation p.L200V 0.50 possibly_damaging(0.578) TCGA-DD-AAEB-01 3 52727666 52727666 T A GNL3 Nonsense_Mutation p.L448* 0.42 TCGA-DD-AAEB-01 4 10669532 10669532 C A CLNK 5'UTR 0.43 TCGA-DD-AAEB-01 4 128689945 128689945 C T SLC25A31 Silent p.V224V 0.32 TCGA-DD-AAEB-01 4 186244738 186244738 A G SNX25 Silent p.K347K 0.04 TCGA-DD-AAEB-01 4 48496259 48496259 T G ZAR1 Nonstop_Mutation p.*425Eext*13 0.31 TCGA-DD-AAEB-01 4 57261620 57261620 A G PPAT Silent p.D484D 0.36 TCGA-DD-AAEB-01 4 57312971 57312971 C T PAICS Missense_Mutation p.L116F 0.43 benign(0.176) TCGA-DD-AAEB-01 4 87643469 87643469 G T PTPN13 Missense_Mutation p.R497I 0.39 deleterious(0) probably_damaging(1) TCGA-DD-AAEB-01 4 89442984 89442984 T - PYURF 3'UTR 0.27 TCGA-DD-AAEB-01 5 109202800 109202800 A G MAN2A1 3'UTR 0.32 TCGA-DD-AAEB-01 5 109202808 109202808 A C MAN2A1 3'UTR 0.31 TCGA-DD-AAEB-01 5 1294122 1294122 G T TERT Silent p.R293R 0.45 TCGA-DD-AAEB-01 5 140264075 140264075 G T PCDHA13 Missense_Mutation p.C741F 0.40 deleterious_low_confidence(0) possibly_damaging(0.562) TCGA-DD-AAEB-01 5 140264085 140264085 G T PCDHA13 Silent p.A744A 0.40 TCGA-DD-AAEB-01 5 140591643 140591643 T C PCDHB12 3'UTR 0.12 TCGA-DD-AAEB-01 5 159830119 159830119 T G SLU7 3'UTR 0.46 TCGA-DD-AAEB-01 5 43650682 43650682 C T NNT Silent p.N570N 0.38 TCGA-DD-AAEB-01 5 55236872 55236872 T C IL6ST 3'UTR 0.41 TCGA-DD-AAEB-01 5 74009421 74009421 G T HEXB Nonsense_Mutation p.E288* 0.37 TCGA-DD-AAEB-01 6 119136492 119136493 - A MCM9 Frame_Shift_Ins p.S976Ffs*14 0.29 TCGA-DD-AAEB-01 6 119281093 119281093 A C FAM184A 3'UTR 0.35 TCGA-DD-AAEB-01 6 126070805 126070805 C A HEY2 5'UTR 0.49 TCGA-DD-AAEB-01 6 13604758 13604758 C T SIRT5 Intron 0.34 TCGA-DD-AAEB-01 6 160468364 160468364 A G IGF2R Missense_Mutation p.Y742C 0.27 deleterious(0) probably_damaging(0.993) TCGA-DD-AAEB-01 6 24466935 24466935 G T GPLD1 Missense_Mutation p.T265K 0.37 deleterious(0) benign(0.398) TCGA-DD-AAEB-01 6 30303626 30303626 G A TRIM39 Silent p.E218E 0.44 TCGA-DD-AAEB-01 6 32151800 32151800 G T RNF5 3'Flank 0.40 TCGA-DD-AAEB-01 6 32940593 32940593 T C BRD2 5'UTR 0.24 TCGA-DD-AAEB-01 6 52369497 52369497 T A TRAM2 Missense_Mutation p.I311F 0.50 tolerated(0.11) benign(0.186) TCGA-DD-AAEB-01 6 65612046 65612046 G A EYS Missense_Mutation p.P936S 0.04 deleterious(0.02) probably_damaging(0.996) TCGA-DD-AAEB-01 6 75860905 75860905 T C COL12A1 Missense_Mutation p.I1367V 0.35 probably_damaging(0.989) TCGA-DD-AAEB-01 6 76419283 76419283 A - SENP6 Frame_Shift_Del p.P920Lfs*39 0.26 TCGA-DD-AAEB-01 7 100839188 100839188 C T MOGAT3 3'UTR 0.33 TCGA-DD-AAEB-01 7 102448814 102448814 C A FAM185A Missense_Mutation p.Q382K 0.26 deleterious(0) probably_damaging(0.925) TCGA-DD-AAEB-01 7 120388068 120388068 T A KCND2 3'UTR 0.60 TCGA-DD-AAEB-01 7 120610762 120610762 G C ING3 Missense_Mutation p.S310T 0.51 tolerated(0.35) benign(0.024) TCGA-DD-AAEB-01 7 142605860 142605860 C T TRPV5 Silent p.G670G 0.63 TCGA-DD-AAEB-01 7 148506446 148506446 A C EZH2 Missense_Mutation p.I689S 0.32 deleterious(0) probably_damaging(0.971) TCGA-DD-AAEB-01 7 150731818 150731818 A G ABCB8 Missense_Mutation p.I223V 0.26 tolerated(0.52) benign(0.124) TCGA-DD-AAEB-01 7 150778955 150778955 C A TMUB1 Missense_Mutation p.R141L 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-DD-AAEB-01 7 30963207 30963207 A G AQP1 Missense_Mutation p.D258G 0.27 tolerated(0.1) benign(0.213) TCGA-DD-AAEB-01 7 73520215 73520215 G T LIMK1 Missense_Mutation p.G207C 0.25 tolerated(0.09) benign(0.053) TCGA-DD-AAEB-01 7 75659739 75659739 C T STYXL1 Missense_Mutation p.D35N 0.34 deleterious(0) probably_damaging(0.983) TCGA-DD-AAEB-01 7 83610698 83610698 G T SEMA3A Silent p.R531R 0.28 TCGA-DD-AAEB-01 8 102701442 102701442 T C NCALD 3'UTR 0.26 TCGA-DD-AAEB-01 8 114186141 114186141 C A CSMD3 Missense_Mutation p.L173F 0.22 tolerated(0.14) benign(0.017) TCGA-DD-AAEB-01 8 120940716 120940716 A G DEPTOR Missense_Mutation p.K67E 0.26 deleterious(0.05) possibly_damaging(0.869) TCGA-DD-AAEB-01 8 134052339 134052339 G A SLA Missense_Mutation p.P214L 0.28 deleterious(0) probably_damaging(1) TCGA-DD-AAEB-01 8 59750854 59750854 T C TOX Missense_Mutation p.K237R 0.29 deleterious(0) probably_damaging(0.952) TCGA-DD-AAEB-01 8 69728153 69728153 T A C8orf34 Missense_Mutation p.S528T 0.60 deleterious_low_confidence(0) benign(0.028) TCGA-DD-AAEB-01 8 75926334 75926334 C T CRISPLD1 Missense_Mutation p.P208L 0.58 deleterious(0.03) benign(0.111) TCGA-DD-AAEB-01 8 92346676 92346676 G T SLC26A7 Splice_Site p.X265_splice 0.62 TCGA-DD-AAEB-01 8 95861725 95861725 A T INTS8 Silent p.S432S 0.24 TCGA-DD-AAEB-01 9 107562206 107562206 T C ABCA1 Missense_Mutation p.I1613V 0.35 tolerated(0.12) benign(0.308) TCGA-DD-AAEB-01 9 111653509 111653510 - GC IKBKAP Frame_Shift_Ins p.L1045Rfs*41 0.34 TCGA-DD-AAEB-01 9 123776190 123776190 C A C5 Missense_Mutation p.A740S 0.40 tolerated(0.74) benign(0.002) TCGA-DD-AAEB-01 9 135947089 135947089 G C CEL Missense_Mutation p.A737P 0.36 tolerated_low_confidence(0.13) benign(0.019) TCGA-DD-AAEB-01 9 136310099 136310099 C T ADAMTS13 Missense_Mutation p.P846S 0.42 tolerated(0.43) benign(0.266) TCGA-DD-AAEB-01 9 15971871 15971871 T C CCDC171 3'UTR 0.45 TCGA-DD-AAEB-01 9 368060 368060 C A DOCK8 Missense_Mutation p.N574K 0.39 deleterious(0) possibly_damaging(0.692) TCGA-DD-AAEB-01 9 91610570 91610570 G T C9orf47 3'UTR 0.34 TCGA-DD-AAEB-01 X 12735950 12735950 T C FRMPD4 Missense_Mutation p.M1002T 0.81 deleterious_low_confidence(0) possibly_damaging(0.459) TCGA-DD-AAEB-01 X 155239647 155239647 G C IL9R Missense_Mutation p.G380A 0.09 tolerated(0.1) possibly_damaging(0.515) TCGA-DD-AAED-01 10 118225668 118225668 A G PNLIPRP3 Silent p.T305T 0.47 TCGA-DD-AAED-01 10 120791755 120791755 T C NANOS1 3'UTR 0.42 TCGA-DD-AAED-01 10 48413997 48413997 C A GDF2 Missense_Mutation p.G291C 0.33 tolerated(0.06) possibly_damaging(0.672) TCGA-DD-AAED-01 10 97787105 97787105 G A CC2D2B Missense_Mutation p.E326K 0.45 tolerated(0.17) benign(0.014) TCGA-DD-AAED-01 10 97919856 97919856 A C ZNF518A RNA 0.38 TCGA-DD-AAED-01 11 102477304 102477304 C T MMP20 Silent p.V305V 0.19 TCGA-DD-AAED-01 11 123777270 123777270 C T OR8D4 Silent p.S44S 0.23 TCGA-DD-AAED-01 11 124766129 124766129 T C ROBO4 Missense_Mutation p.H215R 0.07 tolerated(0.51) benign(0.003) TCGA-DD-AAED-01 11 19246058 19246058 G A E2F8 3'UTR 0.50 TCGA-DD-AAED-01 11 5537631 5537631 C G UBQLNL Missense_Mutation p.S14T 0.39 tolerated(0.14) benign(0.018) TCGA-DD-AAED-01 11 64331793 64331793 T A SLC22A11 Missense_Mutation p.S279T 0.40 deleterious(0) probably_damaging(0.992) TCGA-DD-AAED-01 12 116675396 116675396 A T MED13L Missense_Mutation p.C63S 0.41 deleterious(0) unknown(0) TCGA-DD-AAED-01 12 40918840 40918840 C A MUC19 Intron 0.41 TCGA-DD-AAED-01 12 75601377 75601377 C A KCNC2 Silent p.V129V 0.44 TCGA-DD-AAED-01 14 24800430 24800430 T A ADCY4 Missense_Mutation p.R268W 0.49 deleterious(0) probably_damaging(0.989) TCGA-DD-AAED-01 14 24800431 24800431 C A ADCY4 Missense_Mutation p.K267N 0.49 deleterious(0) probably_damaging(0.965) TCGA-DD-AAED-01 15 40849416 40849416 T A C15orf57 Missense_Mutation p.S143C 0.43 deleterious(0) probably_damaging(0.986) TCGA-DD-AAED-01 15 74219396 74219396 G A LOXL1 Missense_Mutation p.S91N 0.48 tolerated(0.5) benign(0.02) TCGA-DD-AAED-01 15 83686852 83686852 A G BTBD1 Silent p.D472D 0.40 TCGA-DD-AAED-01 15 91423324 91423324 A T FURIN Missense_Mutation p.K459N 0.41 deleterious(0.02) benign(0.001) TCGA-DD-AAED-01 16 68358647 68358647 A G PRMT7 Missense_Mutation p.K65R 0.72 tolerated(0.25) benign(0.02) TCGA-DD-AAED-01 16 84476156 84476156 C T ATP2C2 Missense_Mutation p.A451V 0.69 tolerated(0.33) benign(0.089) TCGA-DD-AAED-01 16 88688677 88688677 G T ZC3H18 Missense_Mutation p.K516N 0.82 deleterious_low_confidence(0.01) unknown(0) TCGA-DD-AAED-01 17 17719813 17719813 C T SREBF1 Missense_Mutation p.A699T 0.54 deleterious(0) probably_damaging(0.968) TCGA-DD-AAED-01 17 27044336 27044336 C T RAB34 Intron 0.59 TCGA-DD-AAED-01 17 29219640 29219640 A T ATAD5 Missense_Mutation p.N1425I 0.42 deleterious(0) possibly_damaging(0.714) TCGA-DD-AAED-01 17 59485703 59485703 C G TBX2 Missense_Mutation p.L659V 0.35 tolerated(0.46) benign(0.037) TCGA-DD-AAED-01 17 61700049 61700049 C T MAP3K3 5'UTR 0.32 TCGA-DD-AAED-01 17 7578555 7578555 C T TP53 Splice_Site p.X126_splice 0.81 TCGA-DD-AAED-01 17 8379003 8379003 A C MYH10 3'UTR 0.88 TCGA-DD-AAED-01 18 19263881 19263881 C T ABHD3 Silent p.L185L 0.38 TCGA-DD-AAED-01 18 33703524 33703524 C A SLC39A6 Silent p.L358L 0.50 TCGA-DD-AAED-01 19 13919681 13919681 C A ZSWIM4 Silent p.I248I 0.43 TCGA-DD-AAED-01 19 17837678 17837678 C T MAP1S Silent p.G495G 0.46 TCGA-DD-AAED-01 19 31040153 31040153 G A ZNF536 Silent p.L1209L 0.48 TCGA-DD-AAED-01 19 36214101 36214101 A G KMT2B Missense_Mutation p.Q976R 0.42 probably_damaging(0.932) TCGA-DD-AAED-01 19 53321213 53321213 C T ZNF28 5'UTR 0.20 TCGA-DD-AAED-01 19 53994274 53994274 G T ZNF813 Missense_Mutation p.R263I 0.44 deleterious(0.02) benign(0.256) TCGA-DD-AAED-01 19 810971 810971 A T PTBP1 3'UTR 0.50 TCGA-DD-AAED-01 1 152681888 152681888 G C LCE4A 3'UTR 0.41 TCGA-DD-AAED-01 1 156567870 156567870 T C GPATCH4 Missense_Mutation p.Y102C 0.39 tolerated(0.17) benign(0.002) TCGA-DD-AAED-01 1 157772322 157772322 G T FCRL1 Missense_Mutation p.A151D 0.33 tolerated(0.32) benign(0.168) TCGA-DD-AAED-01 1 158326432 158326432 T - CD1E Intron 0.21 TCGA-DD-AAED-01 1 160094210 160094210 A G ATP1A2 Missense_Mutation p.H207R 0.30 tolerated(0.28) benign(0.001) TCGA-DD-AAED-01 1 181693620 181693620 G T CACNA1E Missense_Mutation p.V697L 0.52 tolerated(0.11) benign(0.299) TCGA-DD-AAED-01 1 207967082 207967082 A T CD46 3'UTR 0.69 TCGA-DD-AAED-01 1 216011440 216011440 T C USH2A Silent p.E3088E 0.31 TCGA-DD-AAED-01 1 236306038 236306038 C A GPR137B Missense_Mutation p.P39H 0.59 deleterious(0.03) probably_damaging(0.991) TCGA-DD-AAED-01 1 244220409 244220410 - A ZBTB18 3'UTR 0.24 TCGA-DD-AAED-01 1 45974808 45974808 C T MMACHC Missense_Mutation p.P257L 0.51 tolerated_low_confidence(0.1) benign(0.154) TCGA-DD-AAED-01 1 86848670 86848670 C T ODF2L Missense_Mutation p.V151I 0.03 tolerated(0.84) benign(0.036) TCGA-DD-AAED-01 20 44669254 44669254 G C SLC12A5 Splice_Site p.X308_splice 0.41 TCGA-DD-AAED-01 22 17601355 17601355 G A CECR6 Silent p.A221A 0.28 TCGA-DD-AAED-01 22 42071125 42071125 G A NHP2L1 Silent p.L67L 0.63 TCGA-DD-AAED-01 2 103340215 103340215 T C MFSD9 Missense_Mutation p.E194G 0.40 deleterious(0.01) benign(0.14) TCGA-DD-AAED-01 2 131486815 131486815 G A GPR148 Missense_Mutation p.A31T 0.30 tolerated(0.53) benign(0.108) TCGA-DD-AAED-01 2 1667507 1667507 G T PXDN Missense_Mutation p.H479Q 0.33 tolerated(0.07) benign(0.141) TCGA-DD-AAED-01 2 232577602 232577602 G A PTMA 3'UTR 0.09 TCGA-DD-AAED-01 2 233243546 233243546 C T ALPP Silent p.L12L 0.39 TCGA-DD-AAED-01 3 142030272 142030272 T C XRN1 3'UTR 0.39 TCGA-DD-AAED-01 3 155311807 155311807 C - PLCH1 Frame_Shift_Del p.W119* 0.27 TCGA-DD-AAED-01 3 156983419 156983419 C A VEPH1 Nonsense_Mutation p.G721* 0.39 TCGA-DD-AAED-01 3 169802846 169802846 T A GPR160 3'UTR 0.43 TCGA-DD-AAED-01 3 182597383 182597383 C T ATP11B Silent p.C784C 0.41 TCGA-DD-AAED-01 3 195512169 195512169 G T MUC4 Silent p.A2094A 0.09 TCGA-DD-AAED-01 3 58510285 58510285 G A ACOX2 Missense_Mutation p.T465M 0.32 tolerated(0.15) benign(0.186) TCGA-DD-AAED-01 3 62355596 62355596 C T FEZF2 3'UTR 0.36 TCGA-DD-AAED-01 4 166986934 166986934 T C TLL1 Missense_Mutation p.S703P 0.80 deleterious(0) probably_damaging(0.977) TCGA-DD-AAED-01 4 55602719 55602719 C T KIT Missense_Mutation p.T847M 0.71 deleterious(0) probably_damaging(0.99) TCGA-DD-AAED-01 4 88035865 88035865 G T AFF1 Missense_Mutation p.S627I 0.76 deleterious(0.04) unknown(0) TCGA-DD-AAED-01 5 153709146 153709146 G A GALNT10 Missense_Mutation p.R139H 0.23 tolerated(0.14) benign(0.11) TCGA-DD-AAED-01 5 32417841 32417841 T C ZFR Silent p.Q159Q 0.34 TCGA-DD-AAED-01 5 5462390 5462390 G A KIAA0947 Silent p.G981G 0.49 TCGA-DD-AAED-01 5 68849479 68849479 A G OCLN Missense_Mutation p.Y517C 0.37 deleterious(0) probably_damaging(1) TCGA-DD-AAED-01 5 78938692 78938692 A G PAPD4 Missense_Mutation p.H237R 0.33 tolerated(0.3) benign(0.002) TCGA-DD-AAED-01 5 79031059 79031059 A G CMYA5 Silent p.T2157T 0.39 TCGA-DD-AAED-01 5 86659193 86659193 T G RASA1 Nonsense_Mutation p.Y494* 0.35 TCGA-DD-AAED-01 5 908114 908114 G A TRIP13 Silent p.L228L 0.20 TCGA-DD-AAED-01 6 25921499 25921499 T G SLC17A2 Missense_Mutation p.I128L 0.42 tolerated(0.47) benign(0.002) TCGA-DD-AAED-01 6 33266246 33266246 C T RGL2 Missense_Mutation p.E48K 0.46 tolerated_low_confidence(0.07) benign(0.073) TCGA-DD-AAED-01 6 4892318 4892318 C A CDYL Missense_Mutation p.N132K 0.43 tolerated(1) benign(0.005) TCGA-DD-AAED-01 7 111555875 111555875 G T DOCK4 Missense_Mutation p.S384Y 0.41 deleterious(0) benign(0.439) TCGA-DD-AAED-01 7 117431229 117431229 G A CTTNBP2 Missense_Mutation p.S674L 0.43 deleterious(0) possibly_damaging(0.721) TCGA-DD-AAED-01 7 23212604 23212604 A C KLHL7 Missense_Mutation p.N473H 0.42 tolerated(0.58) benign(0.431) TCGA-DD-AAED-01 7 73654297 73654297 T C RFC2 Missense_Mutation p.I222V 0.34 tolerated(0.56) benign(0.001) TCGA-DD-AAED-01 7 81642821 81642821 A G CACNA2D1 Missense_Mutation p.Y410H 0.43 deleterious(0) probably_damaging(0.986) TCGA-DD-AAED-01 7 82784467 82784467 G A PCLO Missense_Mutation p.A497V 0.32 possibly_damaging(0.607) TCGA-DD-AAED-01 8 123964558 123964558 G A ZHX2 Missense_Mutation p.A270T 0.24 tolerated(0.15) probably_damaging(0.998) TCGA-DD-AAED-01 8 12878587 12878587 C A KIAA1456 Silent p.P133P 0.73 TCGA-DD-AAED-01 8 37699537 37699537 C T GPR124 Silent p.T1227T 0.89 TCGA-DD-AAED-01 8 55539339 55539339 A C RP1 Missense_Mutation p.N966T 0.30 tolerated(0.07) benign(0.057) TCGA-DD-AAED-01 8 97797377 97797377 A G CPQ Silent p.L84L 0.31 TCGA-DD-AAED-01 9 111962537 111962537 T A EPB41L4B Missense_Mutation p.K675M 0.82 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-DD-AAED-01 9 112930877 112930877 A G PALM2-AKAP2 3'UTR 0.75 TCGA-DD-AAED-01 9 77454953 77454953 T G TRPM6 Missense_Mutation p.E177D 0.72 tolerated(0.36) benign(0.26) TCGA-DD-AAED-01 X 119391028 119391028 A C ZBTB33 3'UTR 0.86 TCGA-DD-AAED-01 X 135428111 135428111 C A GPR112 Missense_Mutation p.T749N 0.92 tolerated(0.06) possibly_damaging(0.543) TCGA-DD-AAED-01 X 144337223 144337223 C A SPANXN1 Silent p.P36P 0.85 TCGA-DD-AAED-01 X 144905309 144905309 T A SLITRK2 Missense_Mutation p.Y456N 0.88 deleterious(0.04) possibly_damaging(0.861) TCGA-DD-AAED-01 X 53263732 53263732 G A IQSEC2 Missense_Mutation p.P1379L 0.79 tolerated_low_confidence(0.24) possibly_damaging(0.851) TCGA-DD-AAED-01 X 69264286 69264286 A - AWAT2 Frame_Shift_Del p.Y38Tfs*36 0.44 TCGA-DD-AAED-01 X 78216621 78216621 G T P2RY10 Missense_Mutation p.A202S 0.87 tolerated(0.06) possibly_damaging(0.771) TCGA-DD-AAEE-01 10 113913131 113913131 T C GPAM 3'UTR 0.50 TCGA-DD-AAEE-01 10 129179616 129179616 A G DOCK1 Missense_Mutation p.H1243R 0.42 deleterious(0) possibly_damaging(0.676) TCGA-DD-AAEE-01 10 28276331 28276331 G T ARMC4 Silent p.A122A 0.36 TCGA-DD-AAEE-01 10 37520492 37520492 T C ANKRD30A 3'UTR 0.18 TCGA-DD-AAEE-01 10 61831548 61831548 A G ANK3 Missense_Mutation p.Y3031H 0.44 benign(0.278) TCGA-DD-AAEE-01 10 81374879 81374879 C T SFTPA1 3'Flank 0.45 TCGA-DD-AAEE-01 10 93999597 93999597 G A CPEB3 Missense_Mutation p.P171S 0.48 tolerated_low_confidence(0.2) possibly_damaging(0.857) TCGA-DD-AAEE-01 10 95719207 95719207 A G PIPSL RNA 0.42 TCGA-DD-AAEE-01 11 101834056 101834056 A G KIAA1377 Missense_Mutation p.K764E 0.04 deleterious(0.01) possibly_damaging(0.641) TCGA-DD-AAEE-01 11 102641594 102641594 T A MMP10 Missense_Mutation p.Q454L 0.34 deleterious(0.01) probably_damaging(1) TCGA-DD-AAEE-01 11 102650306 102650306 T G MMP10 Silent p.G92G 0.41 TCGA-DD-AAEE-01 11 1084794 1084794 C T MUC2 Silent p.Y863Y 0.42 TCGA-DD-AAEE-01 11 1091476 1091476 A C MUC2 Missense_Mutation p.L1295F 0.06 benign(0.011) TCGA-DD-AAEE-01 11 121016728 121016728 C A TECTA Silent p.G1336G 0.40 TCGA-DD-AAEE-01 11 122742078 122742078 C T CRTAM Missense_Mutation p.H385Y 0.41 tolerated(1) benign(0.003) TCGA-DD-AAEE-01 11 59245374 59245374 G A OR4D10 Missense_Mutation p.V158M 0.12 deleterious(0.02) benign(0.183) TCGA-DD-AAEE-01 11 62367685 62367685 C T MTA2 Missense_Mutation p.R48H 0.37 deleterious(0.02) probably_damaging(0.998) TCGA-DD-AAEE-01 11 64880095 64880095 T A TM7SF2 Missense_Mutation p.L54Q 0.30 deleterious(0.03) possibly_damaging(0.633) TCGA-DD-AAEE-01 11 70830028 70830028 C A SHANK2 Silent p.R86R 0.44 TCGA-DD-AAEE-01 11 94279275 94279275 T G FUT4 3'UTR 0.49 TCGA-DD-AAEE-01 12 100957256 100957256 G A NR1H4 Missense_Mutation p.D484N 0.38 tolerated(0.31) probably_damaging(0.999) TCGA-DD-AAEE-01 12 51566149 51566149 C T TFCP2 Silent p.V19V 0.32 TCGA-DD-AAEE-01 12 52885452 52885452 G T KRT6A Silent p.T203T 0.39 TCGA-DD-AAEE-01 12 54447994 54447994 G T HOXC4 Silent p.S96S 0.49 TCGA-DD-AAEE-01 13 103486837 103486837 G A BIVM Silent p.Q352Q 0.46 TCGA-DD-AAEE-01 13 112725560 112725560 C G SOX1 3'UTR 0.39 TCGA-DD-AAEE-01 13 49086978 49086978 T C RCBTB2 Missense_Mutation p.T135A 0.58 tolerated(0.16) possibly_damaging(0.765) TCGA-DD-AAEE-01 14 103570678 103570678 G A EXOC3L4 Silent p.E412E 0.70 TCGA-DD-AAEE-01 14 103988750 103988750 G A CKB Silent p.N27N 0.82 TCGA-DD-AAEE-01 14 23868178 23868178 C T MYH6 Silent p.K550K 0.49 TCGA-DD-AAEE-01 14 23947195 23947195 C G NGDN Intron 0.44 TCGA-DD-AAEE-01 14 71575423 71575423 A G PCNX Missense_Mutation p.H2135R 0.76 tolerated(0.16) benign(0.293) TCGA-DD-AAEE-01 15 43527750 43527750 C T TGM5 Missense_Mutation p.S544N 0.43 tolerated(0.06) probably_damaging(0.999) TCGA-DD-AAEE-01 15 55881035 55881035 A T PYGO1 Missense_Mutation p.S6T 0.46 tolerated_low_confidence(0.28) unknown(0) TCGA-DD-AAEE-01 16 3633142 3633142 C T SLX4 Silent p.V1703V 0.35 TCGA-DD-AAEE-01 16 86602407 86602407 G T FOXC2 Missense_Mutation p.R489L 0.40 deleterious(0) probably_damaging(0.998) TCGA-DD-AAEE-01 17 30469517 30469517 C A AC090616.2 Missense_Mutation p.R74L 0.12 tolerated_low_confidence(0.73) unknown(0) TCGA-DD-AAEE-01 17 33680410 33680410 C A SLFN11 Nonsense_Mutation p.E623* 0.54 TCGA-DD-AAEE-01 17 42636226 42636226 G T FZD2 Missense_Mutation p.M390I 0.24 deleterious(0.03) benign(0.078) TCGA-DD-AAEE-01 17 7369773 7369773 A G ZBTB4 Silent p.S116S 0.06 TCGA-DD-AAEE-01 17 74288391 74288391 G A QRICH2 Missense_Mutation p.A640V 0.26 tolerated(0.33) benign(0.008) TCGA-DD-AAEE-01 17 74288392 74288392 C T QRICH2 Missense_Mutation p.A640T 0.26 tolerated(0.33) benign(0.021) TCGA-DD-AAEE-01 18 347058 347058 G T COLEC12 Silent p.L188L 0.42 TCGA-DD-AAEE-01 18 48190380 48190380 G C MAPK4 Missense_Mutation p.G18R 0.41 tolerated(0.47) possibly_damaging(0.771) TCGA-DD-AAEE-01 18 67993590 67993590 A G SOCS6 3'UTR 0.20 TCGA-DD-AAEE-01 18 74074355 74074355 C T ZNF516 3'UTR 0.10 TCGA-DD-AAEE-01 19 13192654 13192654 C - NFIX Frame_Shift_Del p.Q414Rfs*50 0.32 TCGA-DD-AAEE-01 19 19790278 19790278 A G ZNF101 Silent p.T160T 0.47 TCGA-DD-AAEE-01 19 20229884 20229884 T A ZNF90 Missense_Mutation p.N507K 0.39 tolerated(1) benign(0) TCGA-DD-AAEE-01 19 22362724 22362724 T C ZNF676 3'UTR 0.17 TCGA-DD-AAEE-01 19 23542118 23542118 G A ZNF91 3'UTR 0.32 TCGA-DD-AAEE-01 19 3534791 3534791 A G FZR1 Splice_Site p.X484_splice 0.64 TCGA-DD-AAEE-01 19 40732450 40732450 G C CNTD2 Silent p.A33A 0.37 TCGA-DD-AAEE-01 19 44833582 44833582 T - ZNF112 Frame_Shift_Del p.E249Gfs*70 0.28 TCGA-DD-AAEE-01 19 45974560 45974560 G T FOSB Splice_Site p.X185_splice 0.34 TCGA-DD-AAEE-01 19 49951314 49951314 G C PIH1D1 Missense_Mutation p.Q115E 0.33 tolerated(0.07) benign(0.044) TCGA-DD-AAEE-01 1 156314368 156314370 TAG AA TSACC Splice_Site p.X12_splice 0.39 TCGA-DD-AAEE-01 1 158815468 158815468 C A MNDA Missense_Mutation p.A221E 0.42 tolerated(1) benign(0.009) TCGA-DD-AAEE-01 1 17668580 17668580 T G PADI4 Missense_Mutation p.I265M 0.17 deleterious(0) probably_damaging(0.965) TCGA-DD-AAEE-01 1 179631411 179631411 T C TDRD5 Missense_Mutation p.M832T 0.30 tolerated(0.14) benign(0.008) TCGA-DD-AAEE-01 1 196694261 196694261 C T CFH Silent p.C569C 0.38 TCGA-DD-AAEE-01 1 234541734 234541734 T C TARBP1 Missense_Mutation p.K1302E 0.44 tolerated(0.27) possibly_damaging(0.888) TCGA-DD-AAEE-01 1 240374413 240374413 T C FMN2 Missense_Mutation p.W1315R 0.51 probably_damaging(1) TCGA-DD-AAEE-01 1 33611516 33611516 A G TRIM62 3'UTR 0.22 TCGA-DD-AAEE-01 1 90400553 90400553 C A LRRC8D Silent p.L642L 0.05 TCGA-DD-AAEE-01 20 1294283 1294283 C A SDCBP2 Intron 0.53 TCGA-DD-AAEE-01 20 853510 853510 G A ANGPT4 3'UTR 0.42 TCGA-DD-AAEE-01 21 10906970 10906970 A T TPTE Missense_Mutation p.F531I 0.06 deleterious(0) probably_damaging(0.997) TCGA-DD-AAEE-01 2 130951946 130951946 G T TUBA3E Missense_Mutation p.L157I 0.48 deleterious_low_confidence(0.05) benign(0.175) TCGA-DD-AAEE-01 2 132021637 132021637 C T POTEE Missense_Mutation p.A870V 0.37 deleterious_low_confidence(0.02) probably_damaging(0.982) TCGA-DD-AAEE-01 2 211341410 211341410 C G LANCL1 5'UTR 0.42 TCGA-DD-AAEE-01 2 21227156 21227156 G T APOB Missense_Mutation p.F4024L 0.40 benign(0) TCGA-DD-AAEE-01 2 64109686 64109686 T C UGP2 Silent p.N114N 0.42 TCGA-DD-AAEE-01 3 140784936 140784936 C A SPSB4 5'UTR 0.38 TCGA-DD-AAEE-01 3 164755792 164755792 C T SI Silent p.R774R 0.44 TCGA-DD-AAEE-01 3 169639109 169639109 C T SAMD7 Missense_Mutation p.S65F 0.37 deleterious(0.03) possibly_damaging(0.87) TCGA-DD-AAEE-01 3 17052798 17052798 A T PLCL2 Missense_Mutation p.S528C 0.37 tolerated(0.07) possibly_damaging(0.895) TCGA-DD-AAEE-01 3 195965614 195965614 T C PCYT1A Missense_Mutation p.N350S 0.34 tolerated(0.34) benign(0) TCGA-DD-AAEE-01 3 41266136 41266136 T C CTNNB1 Missense_Mutation p.S45P 0.57 deleterious(0) probably_damaging(0.939) TCGA-DD-AAEE-01 4 100060242 100060242 C G ADH4 Missense_Mutation p.S107T 0.34 tolerated(0.08) possibly_damaging(0.49) TCGA-DD-AAEE-01 4 106604433 106604433 A T INTS12 Silent p.V282V 0.53 TCGA-DD-AAEE-01 4 153897264 153897264 C T FHDC1 Missense_Mutation p.R941C 0.29 deleterious(0) possibly_damaging(0.891) TCGA-DD-AAEE-01 4 3255044 3255044 C T MSANTD1 Missense_Mutation p.P144L 0.51 tolerated(0.67) benign(0.124) TCGA-DD-AAEE-01 5 137762974 137762974 G T KDM3B Missense_Mutation p.R1533S 0.68 deleterious(0) probably_damaging(0.98) TCGA-DD-AAEE-01 5 140773210 140773210 T C PCDHGA8 Missense_Mutation p.V277A 0.39 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-DD-AAEE-01 5 140792981 140792981 C A PCDHGA10 Missense_Mutation p.S80Y 0.24 deleterious_low_confidence(0) possibly_damaging(0.887) TCGA-DD-AAEE-01 5 145439465 145439465 C T SH3RF2 Missense_Mutation p.P531L 0.23 tolerated(0.16) benign(0.008) TCGA-DD-AAEE-01 5 145858215 145858215 A - TCERG1 Frame_Shift_Del p.R588Gfs*17 0.14 TCGA-DD-AAEE-01 5 156184954 156184954 T - SGCD Intron 0.34 TCGA-DD-AAEE-01 5 158139179 158139179 G T EBF1 Missense_Mutation p.A511D 0.19 deleterious_low_confidence(0) benign(0.025) TCGA-DD-AAEE-01 5 176733526 176733534 CAAGGCGGC - PRELID1 In_Frame_Del p.K206_A208del 0.18 TCGA-DD-AAEE-01 5 1878323 1878323 G T IRX4 Missense_Mutation p.D440E 0.58 deleterious(0) probably_damaging(0.999) TCGA-DD-AAEE-01 5 23527109 23527109 T G PRDM9 Missense_Mutation p.C638G 0.29 deleterious(0) probably_damaging(1) TCGA-DD-AAEE-01 5 7727323 7727323 C A ADCY2 Missense_Mutation p.A607D 0.54 deleterious(0) probably_damaging(0.944) TCGA-DD-AAEE-01 5 90077183 90077183 T C GPR98 Intron 0.29 TCGA-DD-AAEE-01 6 148855918 148855918 A G SASH1 Missense_Mutation p.Y659C 0.82 deleterious(0) probably_damaging(0.999) TCGA-DD-AAEE-01 6 150001298 150001298 T C LATS1 Missense_Mutation p.Y769C 0.75 deleterious(0) probably_damaging(1) TCGA-DD-AAEE-01 6 21598499 21598499 A G SOX4 3'UTR 0.40 TCGA-DD-AAEE-01 6 29408581 29408581 C T OR10C1 Silent p.A263A 0.38 TCGA-DD-AAEE-01 6 32160269 32160269 C A GPSM3 Nonsense_Mutation p.E8* 0.50 TCGA-DD-AAEE-01 6 33165574 33165574 T C RXRB Missense_Mutation p.Y262C 0.35 deleterious(0) probably_damaging(0.999) TCGA-DD-AAEE-01 6 41002766 41002766 C T UNC5CL Silent p.L16L 0.32 TCGA-DD-AAEE-01 6 42689887 42689887 G T PRPH2 Missense_Mutation p.N62K 0.49 tolerated(0.07) possibly_damaging(0.623) TCGA-DD-AAEE-01 6 56966974 56966974 A G ZNF451 Intron 0.48 TCGA-DD-AAEE-01 6 76023019 76023019 C G FILIP1 Missense_Mutation p.L843F 0.34 tolerated(0.32) benign(0.172) TCGA-DD-AAEE-01 6 99323549 99323549 G A FBXL4 Missense_Mutation p.R482W 0.11 tolerated(0.12) possibly_damaging(0.796) TCGA-DD-AAEE-01 7 101845470 101845470 A G CUX1 Missense_Mutation p.I976V 0.47 deleterious(0.04) unknown(0) TCGA-DD-AAEE-01 7 120590829 120590829 T A ING3 5'UTR 0.36 TCGA-DD-AAEE-01 7 138849981 138849981 G T TTC26 Splice_Site p.X299_splice 0.43 TCGA-DD-AAEE-01 7 142630628 142630628 G A TRPV5 5'UTR 0.38 TCGA-DD-AAEE-01 7 143018842 143018842 T A CLCN1 Silent p.R199R 0.11 TCGA-DD-AAEE-01 7 150217878 150217878 A G GIMAP7 Missense_Mutation p.I272M 0.40 deleterious(0.04) benign(0.18) TCGA-DD-AAEE-01 7 155604917 155604917 C T SHH 5'UTR 0.50 TCGA-DD-AAEE-01 7 28843947 28843947 G T CREB5 Silent p.P278P 0.41 TCGA-DD-AAEE-01 7 29966170 29966170 G A SCRN1 Silent p.D348D 0.05 TCGA-DD-AAEE-01 7 48083075 48083075 G C C7orf57 Intron 0.17 TCGA-DD-AAEE-01 7 89866424 89866424 A G STEAP2 3'UTR 0.50 TCGA-DD-AAEE-01 8 145541100 145541100 A C DGAT1 Missense_Mutation p.N330K 0.48 deleterious(0) probably_damaging(0.997) TCGA-DD-AAEE-01 8 23153535 23153535 G A R3HCC1 Silent p.R229R 0.33 TCGA-DD-AAEE-01 8 52733114 52733114 C A PCMTD1 Missense_Mutation p.V291L 0.11 tolerated(0.7) benign(0.003) TCGA-DD-AAEE-01 8 75157174 75157174 T C JPH1 Missense_Mutation p.R499G 0.28 tolerated(0.29) benign(0.029) TCGA-DD-AAEE-01 9 109691842 109691842 C T ZNF462 Silent p.N1883N 0.04 TCGA-DD-AAEE-01 9 111761413 111761413 T C CTNNAL1 Missense_Mutation p.I89V 0.44 deleterious(0) probably_damaging(0.997) TCGA-DD-AAEE-01 9 135156934 135156934 G C SETX Missense_Mutation p.L2192V 0.38 deleterious(0) probably_damaging(0.999) TCGA-DD-AAEE-01 9 135554698 135554698 G T GTF3C4 Missense_Mutation p.K564N 0.36 tolerated(0.12) probably_damaging(0.991) TCGA-DD-AAEE-01 9 93375439 93375439 C T DIRAS2 3'UTR 0.57 TCGA-DD-AAEE-01 X 128630827 128630827 C T SMARCA1 Missense_Mutation p.S509N 0.79 deleterious(0.02) benign(0.078) TCGA-DD-AAEE-01 X 19369497 19369497 C T PDHA1 Silent p.S168S 0.33 TCGA-DD-AAEE-01 X 45606456 45606456 T C MIR222 RNA 0.83 TCGA-DD-AAEE-01 X 72095553 72095553 G A DMRTC1 5'UTR 0.35 TCGA-DD-AAEG-01 10 70673836 70673836 C T DDX50 Missense_Mutation p.T322I 0.39 deleterious(0.03) possibly_damaging(0.838) TCGA-DD-AAEG-01 10 74767975 74767976 - T P4HA1 3'UTR 0.23 TCGA-DD-AAEG-01 11 111574147 111574147 G A SIK2 Silent p.E316E 0.27 TCGA-DD-AAEG-01 11 112126290 112126290 G A PLET1 Silent p.S69S 0.09 TCGA-DD-AAEG-01 11 123524586 123524586 G A SCN3B 5'UTR 0.12 TCGA-DD-AAEG-01 11 128628065 128628065 C G FLI1 Missense_Mutation p.A25G 0.26 tolerated(0.15) possibly_damaging(0.804) TCGA-DD-AAEG-01 11 3039725 3039725 C A CARS Silent p.L514L 0.29 TCGA-DD-AAEG-01 11 57559030 57559030 C T CTNND1 Missense_Mutation p.T27I 0.11 deleterious(0) possibly_damaging(0.894) TCGA-DD-AAEG-01 11 59857213 59857213 A G MS4A2 Silent p.S35S 0.17 TCGA-DD-AAEG-01 11 65359745 65359745 G T EHBP1L1 Missense_Mutation p.S1515I 0.14 deleterious(0) unknown(0) TCGA-DD-AAEG-01 12 31238054 31238054 C T DDX11 Missense_Mutation p.A211V 0.32 tolerated(0.35) benign(0.002) TCGA-DD-AAEG-01 12 45001007 45001007 A C NELL2 Missense_Mutation p.I586M 0.10 deleterious(0.01) possibly_damaging(0.529) TCGA-DD-AAEG-01 12 50039430 50039430 G C FMNL3 3'UTR 0.21 TCGA-DD-AAEG-01 12 5021016 5021016 G C KCNA1 Missense_Mutation p.E158Q 0.40 deleterious(0.02) probably_damaging(0.998) TCGA-DD-AAEG-01 12 50236859 50236859 G A BCDIN3D Silent p.P4P 0.10 TCGA-DD-AAEG-01 12 56510496 56510496 C T RPL41 5'UTR 0.06 TCGA-DD-AAEG-01 12 63544382 63544382 T C AVPR1A Missense_Mutation p.T79A 0.24 tolerated(0.1) benign(0.159) TCGA-DD-AAEG-01 12 65564347 65564347 C T LEMD3 Missense_Mutation p.A324V 0.33 deleterious_low_confidence(0.02) probably_damaging(0.934) TCGA-DD-AAEG-01 12 93139255 93139255 A G PLEKHG7 Missense_Mutation p.Y68C 0.08 tolerated(0.12) benign(0.012) TCGA-DD-AAEG-01 12 94763668 94763668 G T CCDC41 Intron 0.12 TCGA-DD-AAEG-01 13 111132579 111132579 A G COL4A2 Missense_Mutation p.D867G 0.18 possibly_damaging(0.606) TCGA-DD-AAEG-01 13 31195968 31195968 A G USPL1 Missense_Mutation p.K56R 0.12 tolerated(0.12) possibly_damaging(0.903) TCGA-DD-AAEG-01 13 50299635 50299635 G - KPNA3 Frame_Shift_Del p.P129Lfs*11 0.09 TCGA-DD-AAEG-01 13 76397850 76397850 T A LMO7 Missense_Mutation p.D697E 0.52 tolerated(0.67) benign(0.002) TCGA-DD-AAEG-01 14 21702344 21702344 G A HNRNPC Silent p.S3S 0.12 TCGA-DD-AAEG-01 14 23793540 23793540 G C PABPN1 Intron 0.50 TCGA-DD-AAEG-01 14 39648641 39648641 A G PNN Missense_Mutation p.I256M 0.10 tolerated(0.19) benign(0.135) TCGA-DD-AAEG-01 14 64492109 64492109 G A SYNE2 Missense_Mutation p.M2074I 0.50 probably_damaging(0.993) TCGA-DD-AAEG-01 14 64935781 64935781 T G AKAP5 Missense_Mutation p.I223M 0.24 deleterious(0) possibly_damaging(0.53) TCGA-DD-AAEG-01 14 91927808 91927808 C A SMEK1 Nonsense_Mutation p.G757* 0.12 TCGA-DD-AAEG-01 15 40268649 40268649 T C EIF2AK4 Missense_Mutation p.V618A 0.08 deleterious(0) probably_damaging(0.95) TCGA-DD-AAEG-01 15 42059132 42059132 C G MGA Missense_Mutation p.T2951S 0.43 tolerated(0.08) benign(0.066) TCGA-DD-AAEG-01 15 48063719 48063719 G A SEMA6D Missense_Mutation p.V987I 0.36 tolerated(0.06) benign(0.248) TCGA-DD-AAEG-01 15 59381902 59381902 A G RNF111 Missense_Mutation p.I872V 0.30 deleterious(0.02) probably_damaging(0.933) TCGA-DD-AAEG-01 15 69561008 69561008 A C GLCE Missense_Mutation p.T427P 0.12 tolerated(0.27) probably_damaging(0.972) TCGA-DD-AAEG-01 15 90904318 90904318 A G ZNF774 Missense_Mutation p.I419V 0.24 tolerated(0.3) benign(0.004) TCGA-DD-AAEG-01 15 91454130 91454130 A G MAN2A2 Missense_Mutation p.Y605C 0.25 deleterious(0.01) possibly_damaging(0.823) TCGA-DD-AAEG-01 15 96877513 96877536 GAGGATGCTCTTCAGCGCCGTCGA - NR2F2 In_Frame_Del p.R218_E225del 0.11 TCGA-DD-AAEG-01 16 29816222 29816222 C A KIF22 Missense_Mutation p.R589S 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-DD-AAEG-01 16 30675827 30675827 C T FBRS Silent p.N449N 0.12 TCGA-DD-AAEG-01 16 53331069 53331069 A T CHD9 Missense_Mutation p.E1904D 0.10 benign(0.03) TCGA-DD-AAEG-01 16 56996939 56996939 A G CETP Missense_Mutation p.K46E 0.34 tolerated(0.22) benign(0.112) TCGA-DD-AAEG-01 17 12877579 12877579 C T ARHGAP44 Missense_Mutation p.A572V 0.22 tolerated_low_confidence(0.15) benign(0.009) TCGA-DD-AAEG-01 17 1780506 1780506 G A RPA1 Silent p.K196K 0.25 TCGA-DD-AAEG-01 17 28599605 28599605 G C BLMH Missense_Mutation p.S334R 0.07 tolerated(0.75) benign(0.005) TCGA-DD-AAEG-01 17 39673185 39673185 C T KRT15 Missense_Mutation p.V205I 0.31 deleterious(0.01) possibly_damaging(0.655) TCGA-DD-AAEG-01 17 47590068 47590068 A T NGFR Splice_Site p.X328_splice 0.15 TCGA-DD-AAEG-01 17 4906968 4906968 G T KIF1C Missense_Mutation p.R261L 0.06 deleterious(0) benign(0.07) TCGA-DD-AAEG-01 17 7162394 7162395 TT A ELP5 Intron 0.27 TCGA-DD-AAEG-01 17 72428271 72428271 C T GPRC5C Nonsense_Mutation p.Q32* 0.35 TCGA-DD-AAEG-01 17 73831746 73831746 C T UNC13D Missense_Mutation p.R570H 0.10 tolerated(0.15) benign(0.001) TCGA-DD-AAEG-01 17 76109129 76109129 G A TMC6 3'UTR 0.20 TCGA-DD-AAEG-01 17 76130021 76130021 C T TMC8 Silent p.F252F 0.22 TCGA-DD-AAEG-01 17 78919549 78919549 G C RPTOR Silent p.P1036P 0.35 TCGA-DD-AAEG-01 17 79429989 79429989 A C RP11-1055B8.7 Missense_Mutation p.Q2536P 0.19 possibly_damaging(0.736) TCGA-DD-AAEG-01 17 7980038 7980038 G A ALOX12B Silent p.Y433Y 0.17 TCGA-DD-AAEG-01 18 67715231 67715231 T C RTTN Silent p.E1839E 0.17 TCGA-DD-AAEG-01 19 10084600 10084600 A G COL5A3 Missense_Mutation p.S1185P 0.54 probably_damaging(0.916) TCGA-DD-AAEG-01 19 10602292 10602292 C T KEAP1 Missense_Mutation p.G429D 0.11 deleterious(0) probably_damaging(0.985) TCGA-DD-AAEG-01 19 12386801 12386801 G C ZNF44 Missense_Mutation p.R82G 0.05 tolerated(0.12) benign(0.119) TCGA-DD-AAEG-01 19 14583354 14583354 T C PTGER1 3'UTR 0.19 TCGA-DD-AAEG-01 19 19640291 19640291 C G NDUFA13 3'Flank 0.05 TCGA-DD-AAEG-01 19 19672793 19672793 T C PBX4 3'UTR 0.32 TCGA-DD-AAEG-01 19 36123868 36123868 G A RBM42 Missense_Mutation p.R158H 0.35 tolerated(0.09) possibly_damaging(0.865) TCGA-DD-AAEG-01 19 44531618 44531618 A G ZNF222 Missense_Mutation p.T80A 0.08 tolerated(1) benign(0.001) TCGA-DD-AAEG-01 19 50169299 50169299 G A BCL2L12 Silent p.R73R 0.14 TCGA-DD-AAEG-01 19 54584606 54584606 T C TARM1 Missense_Mutation p.I2V 0.37 tolerated(0.25) benign(0.017) TCGA-DD-AAEG-01 1 152325270 152325270 C A FLG2 Silent p.G1664G 0.07 TCGA-DD-AAEG-01 1 155013030 155013030 A C DCST1 Missense_Mutation p.Q154P 0.09 deleterious(0) probably_damaging(0.979) TCGA-DD-AAEG-01 1 156878621 156878621 G A PEAR1 Silent p.T430T 0.15 TCGA-DD-AAEG-01 1 15723948 15723948 G A FHAD1 3'UTR 0.15 TCGA-DD-AAEG-01 1 160851937 160851937 A G ITLN1 Missense_Mutation p.M72T 0.04 deleterious(0) probably_damaging(0.999) TCGA-DD-AAEG-01 1 161681105 161681105 C T FCRLA Nonsense_Mutation p.R137* 0.05 TCGA-DD-AAEG-01 1 179460807 179460807 G A AXDND1 Silent p.A742A 0.03 TCGA-DD-AAEG-01 1 180144477 180144477 A G QSOX1 Missense_Mutation p.N130D 0.05 tolerated(0.51) benign(0.012) TCGA-DD-AAEG-01 1 182828232 182828232 C T DHX9 Nonsense_Mutation p.Q374* 0.09 TCGA-DD-AAEG-01 1 186136049 186136049 A - HMCN1 Frame_Shift_Del p.T5184Pfs*5 0.38 TCGA-DD-AAEG-01 1 186908281 186908281 A T PLA2G4A Missense_Mutation p.L279F 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-DD-AAEG-01 1 18810279 18810279 C - KLHDC7A 3'UTR 0.11 TCGA-DD-AAEG-01 1 207934753 207934753 A G CD46 Missense_Mutation p.D212G 0.11 tolerated(1) benign(0.001) TCGA-DD-AAEG-01 1 214542922 214542922 C A PTPN14 Missense_Mutation p.C1050F 0.04 tolerated(0.05) benign(0.378) TCGA-DD-AAEG-01 1 216405413 216405413 C T USH2A Missense_Mutation p.V959I 0.05 benign(0.219) TCGA-DD-AAEG-01 1 220231020 220231020 A C BPNT1 3'UTR 0.13 TCGA-DD-AAEG-01 1 225305696 225305696 G T DNAH14 Silent p.L440L 0.22 TCGA-DD-AAEG-01 1 226172863 226172863 C A SDE2 3'UTR 0.76 TCGA-DD-AAEG-01 1 24409320 24409320 C T MYOM3 Intron 0.39 TCGA-DD-AAEG-01 1 247614647 247614647 A T OR2B11 Missense_Mutation p.V213E 0.70 deleterious(0) possibly_damaging(0.761) TCGA-DD-AAEG-01 1 25735269 25735269 G T RHCE Missense_Mutation p.N80K 0.73 deleterious(0) possibly_damaging(0.783) TCGA-DD-AAEG-01 1 27023300 27023300 C A ARID1A Missense_Mutation p.P136T 0.26 benign(0.001) TCGA-DD-AAEG-01 1 55118887 55118887 C A MROH7 Silent p.I96I 0.13 TCGA-DD-AAEG-01 1 89401802 89401802 G T CCBL2 3'UTR 0.07 TCGA-DD-AAEG-01 20 21494192 21494192 G T NKX2-2 Missense_Mutation p.P39H 0.09 tolerated(0.07) benign(0.087) TCGA-DD-AAEG-01 20 31375142 31375142 C T DNMT3B Missense_Mutation p.T180M 0.43 tolerated(0.11) benign(0.007) TCGA-DD-AAEG-01 20 34326925 34326925 C T RBM39 Silent p.L22L 0.06 TCGA-DD-AAEG-01 20 40162110 40162110 C G CHD6 Missense_Mutation p.E45Q 0.06 tolerated_low_confidence(0.13) benign(0.014) TCGA-DD-AAEG-01 20 43726446 43726446 C T KCNS1 Missense_Mutation p.G323S 0.12 tolerated(0.18) benign(0.016) TCGA-DD-AAEG-01 20 43851311 43851313 ATC - SEMG2 In_Frame_Del p.S347del 0.24 TCGA-DD-AAEG-01 20 55206890 55206890 C T TFAP2C Silent p.H188H 0.12 TCGA-DD-AAEG-01 21 31869331 31869331 C T KRTAP19-4 Missense_Mutation p.R33H 0.33 tolerated_low_confidence(0.17) unknown(0) TCGA-DD-AAEG-01 21 37581073 37581073 C A DOPEY2 Silent p.A184A 0.31 TCGA-DD-AAEG-01 22 18900834 18900834 G C PRODH Missense_Mutation p.P553A 0.27 deleterious(0) probably_damaging(0.995) TCGA-DD-AAEG-01 22 26423225 26423225 C A MYO18B Missense_Mutation p.P2429T 0.35 deleterious(0) probably_damaging(1) TCGA-DD-AAEG-01 22 38878529 38878540 AATGCCAATCTG - KDELR3 3'Flank 0.35 TCGA-DD-AAEG-01 2 102791045 102791045 A G IL1R1 Splice_Site p.X331_splice 0.23 TCGA-DD-AAEG-01 2 120848050 120848050 A G EPB41L5 Missense_Mutation p.H334R 0.16 tolerated(0.2) benign(0.002) TCGA-DD-AAEG-01 2 203987055 203987055 T A NBEAL1 Missense_Mutation p.W862R 0.26 deleterious(0) probably_damaging(0.999) TCGA-DD-AAEG-01 2 215813385 215813385 T C ABCA12 Missense_Mutation p.T2347A 0.09 deleterious(0) possibly_damaging(0.566) TCGA-DD-AAEG-01 2 234869711 234869711 G A TRPM8 Splice_Site p.X551_splice 0.28 TCGA-DD-AAEG-01 2 96690175 96690175 C T GPAT2 Missense_Mutation p.A557T 0.39 deleterious(0) possibly_damaging(0.695) TCGA-DD-AAEG-01 3 108366815 108366815 T A DZIP3 Missense_Mutation p.N606K 0.09 deleterious_low_confidence(0.01) benign(0.005) TCGA-DD-AAEG-01 3 113176014 113176014 C T SPICE1 Silent p.K542K 0.20 TCGA-DD-AAEG-01 3 123687977 123687977 C T ROPN1 3'UTR 0.05 TCGA-DD-AAEG-01 3 139077908 139077908 C T COPB2 Missense_Mutation p.V806I 0.28 tolerated(0.17) benign(0.001) TCGA-DD-AAEG-01 3 145878772 145878772 C T PLOD2 Missense_Mutation p.G2E 0.34 deleterious_low_confidence(0.01) benign(0.159) TCGA-DD-AAEG-01 3 155199724 155199724 G T PLCH1 Missense_Mutation p.T1372K 0.18 deleterious_low_confidence(0) possibly_damaging(0.493) TCGA-DD-AAEG-01 3 186980347 186980347 G C MASP1 Silent p.A133A 0.43 TCGA-DD-AAEG-01 3 25670387 25670387 C - TOP2B Frame_Shift_Del p.W614* 0.12 TCGA-DD-AAEG-01 3 46010096 46010096 C T FYCO1 Missense_Mutation p.V244M 0.40 tolerated(0.06) benign(0.081) TCGA-DD-AAEG-01 3 52387648 52387648 A T DNAH1 Missense_Mutation p.Q1160L 0.46 benign(0.035) TCGA-DD-AAEG-01 3 57107930 57107930 C G SPATA12 Missense_Mutation p.L70V 0.39 deleterious_low_confidence(0.03) possibly_damaging(0.567) TCGA-DD-AAEG-01 3 69158092 69158092 C G LMOD3 3'UTR 0.50 TCGA-DD-AAEG-01 3 78647957 78647957 A G ROBO1 3'UTR 0.44 TCGA-DD-AAEG-01 4 113352274 113352274 G C ALPK1 Missense_Mutation p.G524A 0.22 tolerated(1) benign(0) TCGA-DD-AAEG-01 4 114153356 114153356 C T ANK2 Missense_Mutation p.H142Y 0.21 probably_damaging(0.999) TCGA-DD-AAEG-01 4 125593424 125593424 C G ANKRD50 Missense_Mutation p.W336C 0.42 deleterious(0) probably_damaging(0.998) TCGA-DD-AAEG-01 4 157732066 157732066 T C PDGFC Missense_Mutation p.I140V 0.07 tolerated(0.05) benign(0.309) TCGA-DD-AAEG-01 4 178283776 178283776 A G NEIL3 3'UTR 0.13 TCGA-DD-AAEG-01 4 1920344 1920344 G T WHSC1 Missense_Mutation p.R468S 0.33 tolerated(0.07) possibly_damaging(0.507) TCGA-DD-AAEG-01 4 2749465 2749465 C T TNIP2 Missense_Mutation p.A162T 0.12 deleterious(0) probably_damaging(0.998) TCGA-DD-AAEG-01 4 30724132 30724132 C T PCDH7 Missense_Mutation p.T363M 0.15 deleterious(0) possibly_damaging(0.565) TCGA-DD-AAEG-01 4 435883 435883 C T ZNF721 Silent p.T791T 0.12 TCGA-DD-AAEG-01 4 73943153 73943153 T A ANKRD17 Silent p.R2502R 0.11 TCGA-DD-AAEG-01 5 110432780 110432780 A G WDR36 Missense_Mutation p.N121S 0.09 tolerated(0.25) probably_damaging(0.952) TCGA-DD-AAEG-01 5 149427232 149427232 A G HMGXB3 Missense_Mutation p.K999R 0.10 tolerated(0.93) benign(0.011) TCGA-DD-AAEG-01 5 176952090 176952090 C T FAM193B Silent p.L464L 0.17 TCGA-DD-AAEG-01 6 149997738 149997738 A G LATS1 Missense_Mutation p.L910S 0.53 deleterious(0) probably_damaging(0.999) TCGA-DD-AAEG-01 6 25087020 25087020 G T CMAHP RNA 0.28 TCGA-DD-AAEG-01 6 33754718 33754718 T C LEMD2 Intron 0.12 TCGA-DD-AAEG-01 6 43395643 43395646 TGGG A ABCC10 Intron 0.10 TCGA-DD-AAEG-01 6 56481396 56481397 - T DST Intron 0.19 TCGA-DD-AAEG-01 6 9897126 9897126 T A OFCC1 Intron 0.08 TCGA-DD-AAEG-01 7 106508205 106508205 G A PIK3CG Missense_Mutation p.V67M 0.06 deleterious(0) probably_damaging(0.982) TCGA-DD-AAEG-01 7 127222196 127222196 G A GCC1 Missense_Mutation p.P734S 0.10 tolerated(0.48) benign(0.067) TCGA-DD-AAEG-01 7 129474880 129474880 G C UBE2H Missense_Mutation p.T150R 0.47 deleterious(0.05) probably_damaging(0.948) TCGA-DD-AAEG-01 7 55466207 55466207 G T LANCL2 Silent p.R138R 0.44 TCGA-DD-AAEG-01 7 83643585 83643585 A G SEMA3A Silent p.N250N 0.12 TCGA-DD-AAEG-01 8 120430340 120430340 G A NOV Missense_Mutation p.R118H 0.10 tolerated(0.23) benign(0.052) TCGA-DD-AAEG-01 8 27593588 27593588 T A CCDC25 3'UTR 0.12 TCGA-DD-AAEG-01 8 37986410 37986410 A G ASH2L Missense_Mutation p.I490V 0.35 deleterious(0.02) benign(0.02) TCGA-DD-AAEG-01 8 40389709 40389709 T C ZMAT4 3'UTR 0.08 TCGA-DD-AAEG-01 9 113065906 113065906 T C TXNDC8 3'UTR 0.25 TCGA-DD-AAEG-01 9 36191016 36191016 G T CLTA 5'UTR 0.25 TCGA-DD-AAEG-01 9 37541364 37541364 A G FBXO10 Silent p.I134I 0.41 TCGA-DD-AAEG-01 9 95780470 95780470 G T FGD3 Missense_Mutation p.R443I 0.32 deleterious(0) possibly_damaging(0.766) TCGA-DD-AAEG-01 9 95888799 95888799 G A NINJ1 Missense_Mutation p.A66V 0.10 deleterious(0.05) probably_damaging(0.983) TCGA-DD-AAEG-01 X 103268245 103268245 C G H2BFWT 5'UTR 0.12 TCGA-DD-AAEG-01 X 105450458 105450458 T A MUM1L1 Missense_Mutation p.F345I 0.21 tolerated(0.32) benign(0.007) TCGA-DD-AAEG-01 X 114536617 114536617 G T LUZP4 Missense_Mutation p.R51I 0.37 tolerated(0.08) probably_damaging(0.955) TCGA-DD-AAEG-01 X 120183581 120183581 G A GLUD2 3'UTR 0.28 TCGA-DD-AAEG-01 X 136649300 136649300 A T ZIC3 Silent p.P150P 0.12 TCGA-DD-AAEG-01 X 155005938 155005938 G A SPRY3 3'UTR 0.06 TCGA-DD-AAEG-01 X 155239595 155239595 C G IL9R Missense_Mutation p.P363A 0.09 deleterious(0.01) probably_damaging(0.968) TCGA-DD-AAEG-01 X 15555298 15555298 G C BMX Missense_Mutation p.E422Q 0.12 deleterious(0.01) benign(0.298) TCGA-DD-AAEG-01 X 32382769 32382769 A T DMD Missense_Mutation p.I1695N 0.05 possibly_damaging(0.506) TCGA-DD-AAEG-01 X 46359734 46359734 G A ZNF674 Silent p.V430V 0.09 TCGA-DD-AAEG-01 X 47434654 47434654 G A SYN1 Missense_Mutation p.P393L 0.11 deleterious(0) possibly_damaging(0.655) TCGA-DD-AAEH-01 10 26312983 26312983 T C MYO3A Missense_Mutation p.L255P 0.33 tolerated(0.12) possibly_damaging(0.555) TCGA-DD-AAEH-01 10 27356167 27356167 T C ANKRD26 Missense_Mutation p.I376V 0.41 tolerated(0.5) benign(0.007) TCGA-DD-AAEH-01 10 72324178 72324178 A G PALD1 Missense_Mutation p.Y774C 0.27 deleterious(0) possibly_damaging(0.598) TCGA-DD-AAEH-01 11 105850546 105850546 C A GRIA4 3'UTR 0.27 TCGA-DD-AAEH-01 11 123465509 123465509 T A GRAMD1B Missense_Mutation p.I136N 0.28 deleterious(0) probably_damaging(0.999) TCGA-DD-AAEH-01 11 14539222 14539222 T C PSMA1 Missense_Mutation p.I80V 0.35 deleterious(0.02) benign(0.091) TCGA-DD-AAEH-01 11 214370 214370 C T RIC8A 3'UTR 0.27 TCGA-DD-AAEH-01 11 5153167 5153167 C T OR52A5 Missense_Mutation p.A236T 0.43 deleterious(0.04) possibly_damaging(0.654) TCGA-DD-AAEH-01 11 5275588 5275588 C A HBG2 Missense_Mutation p.K83N 0.20 deleterious(0.02) probably_damaging(0.981) TCGA-DD-AAEH-01 11 57310839 57310841 GAG - SMTNL1 In_Frame_Del p.E261del 0.17 TCGA-DD-AAEH-01 11 597422 597422 T G PHRF1 Missense_Mutation p.V249G 0.31 deleterious(0) benign(0.158) TCGA-DD-AAEH-01 11 62473718 62473718 G A BSCL2 Intron 0.33 TCGA-DD-AAEH-01 11 73008130 73008130 T C P2RY6 Silent p.Y189Y 0.56 TCGA-DD-AAEH-01 11 75115747 75115747 G T RPS3 Silent p.L206L 0.27 TCGA-DD-AAEH-01 12 40631840 40631840 C A LRRK2 Nonsense_Mutation p.S169* 0.06 TCGA-DD-AAEH-01 12 42707501 42707502 TA - ZCRB1 Frame_Shift_Del p.I171Sfs*8 0.25 TCGA-DD-AAEH-01 12 46244346 46244347 AC - ARID2 Frame_Shift_Del p.T814Sfs*26 0.25 TCGA-DD-AAEH-01 12 49375114 49375114 G T WNT1 Silent p.R268R 0.30 TCGA-DD-AAEH-01 12 57132217 57132217 C T PRIM1 Splice_Site p.X382_splice 0.37 TCGA-DD-AAEH-01 12 86373973 86373973 C T MGAT4C Silent p.E177E 0.24 TCGA-DD-AAEH-01 12 88420843 88420843 G A C12orf50 5'UTR 0.25 TCGA-DD-AAEH-01 13 33241913 33241913 C G PDS5B Missense_Mutation p.Q213E 0.34 tolerated(0.14) benign(0.032) TCGA-DD-AAEH-01 13 53232539 53232539 G T SUGT1 Missense_Mutation p.V65F 0.21 deleterious(0.01) possibly_damaging(0.878) TCGA-DD-AAEH-01 14 105411288 105411288 C T AHNAK2 Silent p.A3500A 0.30 TCGA-DD-AAEH-01 14 71137958 71137958 C - TTC9 3'UTR 0.23 TCGA-DD-AAEH-01 14 86089510 86089510 T C FLRT2 Missense_Mutation p.V551A 0.36 tolerated(0.1) possibly_damaging(0.562) TCGA-DD-AAEH-01 14 91691249 91691249 C T C14orf159 3'UTR 0.36 TCGA-DD-AAEH-01 14 94693699 94693699 G T PPP4R4 Intron 0.24 TCGA-DD-AAEH-01 15 40943693 40943693 A G CASC5 Silent p.Q2105Q 0.51 TCGA-DD-AAEH-01 15 48760684 48760684 C T FBN1 Missense_Mutation p.V1503I 0.24 benign(0.002) TCGA-DD-AAEH-01 15 52611468 52611468 T A MYO5A Missense_Mutation p.T1650S 0.35 tolerated(1) benign(0.023) TCGA-DD-AAEH-01 15 63944717 63944717 A G HERC1 Silent p.N3438N 0.35 TCGA-DD-AAEH-01 15 68497725 68497725 C A CALML4 5'UTR 0.25 TCGA-DD-AAEH-01 16 28857319 28857319 T A TUFM Missense_Mutation p.Y54F 0.40 tolerated(1) benign(0.05) TCGA-DD-AAEH-01 16 31289337 31289337 G - ITGAM Frame_Shift_Del p.A423Hfs*10 0.22 TCGA-DD-AAEH-01 16 50388735 50388736 - T BRD7 Frame_Shift_Ins p.P120Afs*43 0.29 TCGA-DD-AAEH-01 16 54318461 54318461 G A IRX3 Silent p.H444H 0.38 TCGA-DD-AAEH-01 16 67316522 67316522 C A PLEKHG4 Missense_Mutation p.A457D 0.61 tolerated(0.28) benign(0.119) TCGA-DD-AAEH-01 16 88496242 88496242 G A ZNF469 Silent p.A788A 0.06 TCGA-DD-AAEH-01 17 61497385 61497385 C A TANC2 Missense_Mutation p.L1348M 0.56 deleterious(0.02) possibly_damaging(0.823) TCGA-DD-AAEH-01 17 9497562 9497562 G A WDR16 Missense_Mutation p.A154T 0.30 tolerated(0.15) benign(0.059) TCGA-DD-AAEH-01 18 21422363 21422363 A T LAMA3 Missense_Mutation p.Q1114L 0.36 benign(0.027) TCGA-DD-AAEH-01 18 77137385 77137385 G T ATP9B 3'UTR 0.35 TCGA-DD-AAEH-01 19 1068487 1068487 C T HMHA1 Silent p.G71G 0.35 TCGA-DD-AAEH-01 19 38976259 38976259 G T RYR1 Missense_Mutation p.R1655L 0.21 benign(0.055) TCGA-DD-AAEH-01 19 40319067 40319067 A G DYRK1B Missense_Mutation p.L226P 0.33 tolerated(0.11) probably_damaging(0.96) TCGA-DD-AAEH-01 19 46094941 46094941 C T GPR4 Missense_Mutation p.A62T 0.41 deleterious(0) possibly_damaging(0.711) TCGA-DD-AAEH-01 19 52327369 52327369 G A FPR3 Missense_Mutation p.R123H 0.26 deleterious(0.03) possibly_damaging(0.449) TCGA-DD-AAEH-01 1 107599340 107599340 G A PRMT6 Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0) benign(0.107) TCGA-DD-AAEH-01 1 115273150 115273150 T C CSDE1 Silent p.E436E 0.29 TCGA-DD-AAEH-01 1 12820816 12820816 G A C1orf158 Missense_Mutation p.A173T 0.10 tolerated(0.07) benign(0.024) TCGA-DD-AAEH-01 1 152279038 152279038 C A FLG Missense_Mutation p.R2775M 0.08 possibly_damaging(0.546) TCGA-DD-AAEH-01 1 152732150 152732150 C A KPRP Missense_Mutation p.P29H 0.24 deleterious_low_confidence(0.02) probably_damaging(0.951) TCGA-DD-AAEH-01 1 154321379 154321379 G C ATP8B2 Missense_Mutation p.G1153R 0.21 tolerated(1) benign(0.01) TCGA-DD-AAEH-01 1 156290762 156290762 A G CCT3 Silent p.S159S 0.32 TCGA-DD-AAEH-01 1 159166162 159166162 A C CADM3 Missense_Mutation p.T268P 0.31 tolerated(0.07) benign(0.028) TCGA-DD-AAEH-01 1 160313176 160313176 A C NCSTN 5'UTR 0.17 TCGA-DD-AAEH-01 1 172547511 172547511 C T SUCO Silent p.L472L 0.05 TCGA-DD-AAEH-01 1 175046567 175046567 G A TNN Missense_Mutation p.E5K 0.28 tolerated_low_confidence(0.25) benign(0.013) TCGA-DD-AAEH-01 1 183201974 183201974 A G LAMC2 Silent p.E734E 0.25 TCGA-DD-AAEH-01 1 185704070 185704070 T A HMCN1 Nonsense_Mutation p.Y53* 0.26 TCGA-DD-AAEH-01 1 186082011 186082011 A G HMCN1 Missense_Mutation p.D3686G 0.31 possibly_damaging(0.644) TCGA-DD-AAEH-01 1 226033008 226033008 A C EPHX1 Missense_Mutation p.Q443P 0.12 deleterious(0.04) benign(0.418) TCGA-DD-AAEH-01 1 228525730 228525730 T A OBSCN Missense_Mutation p.V6586E 0.49 probably_damaging(0.999) TCGA-DD-AAEH-01 1 240601508 240601508 G T FMN2 Missense_Mutation p.E1686D 0.21 possibly_damaging(0.766) TCGA-DD-AAEH-01 1 24113999 24113999 G A PITHD1 3'UTR 0.40 TCGA-DD-AAEH-01 1 46827352 46827352 A G NSUN4 Missense_Mutation p.N330S 0.27 tolerated(0.48) benign(0.014) TCGA-DD-AAEH-01 1 54666136 54666136 A G MRPL37 Missense_Mutation p.I74V 0.31 tolerated(1) benign(0) TCGA-DD-AAEH-01 20 10602024 10602024 T C SLX4IP Silent p.P156P 0.49 TCGA-DD-AAEH-01 20 1961381 1961381 T C PDYN Missense_Mutation p.K118R 0.28 tolerated(0.79) benign(0.002) TCGA-DD-AAEH-01 20 25596729 25596729 G C NANP Silent p.T193T 0.19 TCGA-DD-AAEH-01 20 44417610 44417610 G A WFDC3 Silent p.C57C 0.17 TCGA-DD-AAEH-01 20 62316913 62316928 GTTCCCCAGCAGGGCT - RTEL1 Frame_Shift_Del p.S435Gfs*38 0.14 TCGA-DD-AAEH-01 21 44589306 44589306 G A CRYAA Missense_Mutation p.E33K 0.22 tolerated(0.05) benign(0.125) TCGA-DD-AAEH-01 22 26164976 26164976 T C MYO18B Silent p.L365L 0.28 TCGA-DD-AAEH-01 2 116525977 116525977 C T DPP10 Silent p.I410I 0.32 TCGA-DD-AAEH-01 2 125672529 125672529 T A CNTNAP5 3'UTR 0.30 TCGA-DD-AAEH-01 2 128096589 128096589 C A MAP3K2 Missense_Mutation p.L14F 0.30 deleterious(0) probably_damaging(0.998) TCGA-DD-AAEH-01 2 160050974 160050974 G A TANC1 Silent p.L983L 0.28 TCGA-DD-AAEH-01 2 1639201 1639201 T C PXDN Silent p.A1433A 0.33 TCGA-DD-AAEH-01 2 176802102 176802102 C A KIAA1715 Missense_Mutation p.V342L 0.40 tolerated(0.3) benign(0) TCGA-DD-AAEH-01 2 178098966 178098966 C A NFE2L2 Missense_Mutation p.D27Y 0.46 deleterious(0) probably_damaging(1) TCGA-DD-AAEH-01 2 198260907 198260907 C G SF3B1 Missense_Mutation p.V1138L 0.36 deleterious(0.05) benign(0.048) TCGA-DD-AAEH-01 2 203103285 203103285 G A SUMO1 5'UTR 0.30 TCGA-DD-AAEH-01 2 231109774 231109774 A T SP140 Missense_Mutation p.S215C 0.35 tolerated(0.13) possibly_damaging(0.887) TCGA-DD-AAEH-01 2 233393032 233393032 C G CHRND Missense_Mutation p.R102G 0.35 deleterious(0.01) probably_damaging(1) TCGA-DD-AAEH-01 2 48822410 48822410 C T STON1 Missense_Mutation p.P726L 0.35 deleterious(0.04) benign(0.282) TCGA-DD-AAEH-01 2 64808325 64808325 T G AFTPH Silent p.A819A 0.24 TCGA-DD-AAEH-01 2 71357354 71357354 G T MCEE 5'UTR 0.29 TCGA-DD-AAEH-01 2 80835353 80835353 A T CTNNA2 Missense_Mutation p.Q780H 0.48 deleterious(0) possibly_damaging(0.847) TCGA-DD-AAEH-01 3 100105787 100105787 T C TOMM70A Silent p.K120K 0.30 TCGA-DD-AAEH-01 3 119133155 119133155 G C ARHGAP31 Missense_Mutation p.E793D 0.41 deleterious(0.01) probably_damaging(0.996) TCGA-DD-AAEH-01 3 142278092 142278092 C A ATR Splice_Site p.X578_splice 0.34 TCGA-DD-AAEH-01 3 197804154 197804154 A C ANKRD18DP RNA 0.22 TCGA-DD-AAEH-01 3 41266136 41266136 T C CTNNB1 Missense_Mutation p.S45P 0.39 deleterious(0) probably_damaging(0.939) TCGA-DD-AAEH-01 3 55768826 55768826 G C ERC2 Missense_Mutation p.D895E 0.35 tolerated(0.1) probably_damaging(0.997) TCGA-DD-AAEH-01 4 107133975 107133975 A T TBCK Missense_Mutation p.S598T 0.31 deleterious(0.05) possibly_damaging(0.566) TCGA-DD-AAEH-01 4 114276434 114276434 G A ANK2 Silent p.E2220E 0.46 TCGA-DD-AAEH-01 4 156294546 156294546 C T MAP9 Missense_Mutation p.D75N 0.44 deleterious(0.04) benign(0.081) TCGA-DD-AAEH-01 4 24531339 24531339 C T DHX15 Missense_Mutation p.V719I 0.28 deleterious(0) benign(0.301) TCGA-DD-AAEH-01 4 79475642 79475642 G T ANXA3 Missense_Mutation p.W5C 0.07 tolerated(0.17) possibly_damaging(0.872) TCGA-DD-AAEH-01 5 134332010 134332010 G T CATSPER3 Missense_Mutation p.M100I 0.26 tolerated(0.14) benign(0.101) TCGA-DD-AAEH-01 5 170738654 170738654 C A TLX3 3'UTR 0.31 TCGA-DD-AAEH-01 5 180687293 180687293 G A TRIM52 Silent p.S174S 0.35 TCGA-DD-AAEH-01 5 33546183 33546183 G T ADAMTS12 Missense_Mutation p.A1476D 0.29 deleterious(0.03) benign(0.424) TCGA-DD-AAEH-01 6 26199183 26199183 A G HIST1H2AD Silent p.L97L 0.15 TCGA-DD-AAEH-01 6 29591163 29591163 G T GABBR1 Missense_Mutation p.N294K 0.19 deleterious(0) benign(0.093) TCGA-DD-AAEH-01 6 31697012 31697012 G A DDAH2 5'UTR 0.58 TCGA-DD-AAEH-01 6 33145004 33145004 T C COL11A2 Splice_Site p.X572_splice 0.54 TCGA-DD-AAEH-01 6 41606344 41606344 C A MDFI 5'UTR 0.14 TCGA-DD-AAEH-01 6 43274045 43274045 T A CRIP3 Missense_Mutation p.K136M 0.13 deleterious(0) possibly_damaging(0.785) TCGA-DD-AAEH-01 6 43274046 43274046 T C CRIP3 Missense_Mutation p.K136E 0.12 deleterious(0.03) benign(0.226) TCGA-DD-AAEH-01 6 43592642 43592642 C A GTPBP2 Missense_Mutation p.S288I 0.21 deleterious(0) probably_damaging(0.917) TCGA-DD-AAEH-01 7 128531136 128531136 C A KCP RNA 0.27 TCGA-DD-AAEH-01 7 149172236 149172236 T A ZNF746 Missense_Mutation p.N393Y 0.30 deleterious(0.01) probably_damaging(0.991) TCGA-DD-AAEH-01 7 150778500 150778500 C T TMUB1 3'UTR 0.08 TCGA-DD-AAEH-01 7 26232938 26232940 AGA - HNRNPA2B1 In_Frame_Del p.S311del 0.33 TCGA-DD-AAEH-01 7 2978336 2978336 G A CARD11 Nonsense_Mutation p.Q332* 0.34 TCGA-DD-AAEH-01 7 48428782 48428782 G A ABCA13 Silent p.L3873L 0.35 TCGA-DD-AAEH-01 7 82582023 82582023 G T PCLO Missense_Mutation p.A2749D 0.36 unknown(0) TCGA-DD-AAEH-01 8 145625402 145625402 G C CPSF1 Missense_Mutation p.I337M 0.18 deleterious(0) probably_damaging(0.924) TCGA-DD-AAEH-01 9 128305415 128305415 A G MAPKAP1 Missense_Mutation p.V294A 0.22 tolerated(0.08) benign(0.411) TCGA-DD-AAEH-01 9 134139976 134139976 G A FAM78A Intron 0.37 TCGA-DD-AAEH-01 9 136308565 136308565 G T ADAMTS13 Missense_Mutation p.R768L 0.25 tolerated(0.16) benign(0.087) TCGA-DD-AAEH-01 9 139906760 139906760 C T ABCA2 Silent p.L1752L 0.43 TCGA-DD-AAEH-01 9 140008389 140008402 AAGTCGGCCAGGGC - DPP7 Frame_Shift_Del p.A134Rfs*72 0.30 TCGA-DD-AAEH-01 9 43626664 43626664 G T SPATA31A6 Missense_Mutation p.P675T 0.33 deleterious(0.04) benign(0.377) TCGA-DD-AAEH-01 X 106846296 106846296 T C FRMPD3 Missense_Mutation p.L1709P 0.57 deleterious(0) probably_damaging(0.999) TCGA-DD-AAEH-01 X 109247389 109247389 G A TMEM164 Missense_Mutation p.M129I 0.58 tolerated(1) benign(0.004) TCGA-DD-AAEH-01 X 54957051 54957051 T C TRO Silent p.S1298S 0.71 TCGA-DD-AAEH-01 X 70836725 70836725 G T CXCR3 Missense_Mutation p.N246K 0.73 tolerated(0.24) benign(0.032) TCGA-DD-AAEH-01 X 73963704 73963704 G T KIAA2022 Missense_Mutation p.P230T 0.63 deleterious(0.01) benign(0.125) TCGA-DD-AAEI-01 10 114046125 114046125 C T TECTB Silent p.S153S 0.48 TCGA-DD-AAEI-01 10 129905646 129905646 G C MKI67 Missense_Mutation p.H1486Q 0.35 tolerated(0.53) benign(0.073) TCGA-DD-AAEI-01 10 135098648 135098648 G A TUBGCP2 Silent p.L683L 0.25 TCGA-DD-AAEI-01 10 61832432 61832432 T A ANK3 Missense_Mutation p.E2736V 0.24 probably_damaging(0.981) TCGA-DD-AAEI-01 10 7830138 7830138 G T ATP5C1 5'UTR 0.34 TCGA-DD-AAEI-01 10 875345 875345 T A LARP4B Missense_Mutation p.S369C 0.47 deleterious(0) probably_damaging(0.928) TCGA-DD-AAEI-01 11 108206607 108206607 A T ATM Missense_Mutation p.Q2729H 0.54 deleterious(0) probably_damaging(0.996) TCGA-DD-AAEI-01 11 113683133 113683133 A T USP28 Missense_Mutation p.W613R 0.26 deleterious(0) probably_damaging(1) TCGA-DD-AAEI-01 11 125848206 125848206 T A CDON Missense_Mutation p.N1117Y 0.24 deleterious(0) probably_damaging(1) TCGA-DD-AAEI-01 11 128843038 128843038 G T ARHGAP32 Missense_Mutation p.F1107L 0.38 tolerated_low_confidence(1) benign(0.002) TCGA-DD-AAEI-01 11 1857147 1857147 G A SYT8 Missense_Mutation p.S111N 0.37 tolerated(0.32) benign(0.011) TCGA-DD-AAEI-01 11 4141136 4141136 A G RRM1 Missense_Mutation p.Y285C 0.22 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DD-AAEI-01 11 57575697 57575697 G A CTNND1 Missense_Mutation p.S675N 0.43 deleterious(0.01) possibly_damaging(0.756) TCGA-DD-AAEI-01 11 5968733 5968733 A G OR56A3 Missense_Mutation p.I53V 0.31 tolerated(0.24) benign(0.071) TCGA-DD-AAEI-01 11 65650839 65650839 C T CTSW Missense_Mutation p.H322Y 0.29 tolerated(0.09) benign(0.006) TCGA-DD-AAEI-01 12 111729223 111729223 C - CUX2 Frame_Shift_Del p.V103Cfs*10 0.23 TCGA-DD-AAEI-01 12 124303730 124303730 G A DNAH10 Silent p.Q1193Q 0.16 TCGA-DD-AAEI-01 12 124498542 124498542 A G ZNF664 3'UTR 0.22 TCGA-DD-AAEI-01 12 20806880 20806880 G A PDE3A Splice_Site p.X976_splice 0.47 TCGA-DD-AAEI-01 12 32777980 32777980 A G FGD4 Missense_Mutation p.N538S 0.39 tolerated(0.38) benign(0.005) TCGA-DD-AAEI-01 12 46230722 46230722 T G ARID2 Missense_Mutation p.F324C 0.07 tolerated(0.07) probably_damaging(0.963) TCGA-DD-AAEI-01 12 48378844 48378844 A T COL2A1 Silent p.P589P 0.24 TCGA-DD-AAEI-01 12 49446022 49446022 C T KMT2D Missense_Mutation p.A482T 0.33 unknown(0) TCGA-DD-AAEI-01 12 72050734 72050734 G A ZFC3H1 Missense_Mutation p.R316C 0.50 deleterious(0) possibly_damaging(0.88) TCGA-DD-AAEI-01 12 80933612 80933612 A T PTPRQ Missense_Mutation p.I1011L 0.21 tolerated(0.86) benign(0.008) TCGA-DD-AAEI-01 13 107147231 107147231 G A EFNB2 Missense_Mutation p.P204L 0.10 tolerated(0.37) benign(0.028) TCGA-DD-AAEI-01 13 36747903 36747903 T A SOHLH2 Missense_Mutation p.Q386L 0.35 deleterious(0.03) benign(0.108) TCGA-DD-AAEI-01 13 42876689 42876689 A T AKAP11 Silent p.T1269T 0.32 TCGA-DD-AAEI-01 14 102605737 102605737 G A HSP90AA1 Missense_Mutation p.P2L 0.35 benign(0.035) TCGA-DD-AAEI-01 14 103807474 103807474 A T EIF5 3'UTR 0.38 TCGA-DD-AAEI-01 14 23858666 23858666 C A MYH6 Missense_Mutation p.R1305L 0.36 deleterious(0) possibly_damaging(0.622) TCGA-DD-AAEI-01 14 64676274 64676274 A G SYNE2 Missense_Mutation p.K6173R 0.35 possibly_damaging(0.686) TCGA-DD-AAEI-01 14 95236232 95236232 C T GSC Missense_Mutation p.D41N 0.25 tolerated_low_confidence(0.11) benign(0.136) TCGA-DD-AAEI-01 15 23086286 23086286 G T NIPA1 Missense_Mutation p.N42K 0.36 deleterious(0.02) probably_damaging(0.952) TCGA-DD-AAEI-01 15 48494872 48494872 C T CTXN2 3'UTR 0.24 TCGA-DD-AAEI-01 15 49716642 49716642 G T FGF7 Nonsense_Mutation p.E50* 0.30 TCGA-DD-AAEI-01 15 52230227 52230227 T G LEO1 3'UTR 0.47 TCGA-DD-AAEI-01 16 1269083 1269083 C T CACNA1H Missense_Mutation p.R2001W 0.31 tolerated(0.06) possibly_damaging(0.614) TCGA-DD-AAEI-01 16 2018778 2018778 G T RNF151 Missense_Mutation p.R197L 0.38 deleterious(0.01) benign(0.422) TCGA-DD-AAEI-01 16 23203678 23203678 A C SCNN1G Silent p.S208S 0.39 TCGA-DD-AAEI-01 16 24834981 24834981 C T TNRC6A Silent p.H1914H 0.33 TCGA-DD-AAEI-01 16 51172810 51172810 A T SALL1 Missense_Mutation p.V1108D 0.29 deleterious(0.02) benign(0.24) TCGA-DD-AAEI-01 16 81208430 81208430 G A PKD1L2 Silent p.G147G 0.32 TCGA-DD-AAEI-01 16 86612573 86612573 C A FOXL1 Missense_Mutation p.R82S 0.42 deleterious(0.01) probably_damaging(0.925) TCGA-DD-AAEI-01 16 89350828 89350828 T C ANKRD11 Missense_Mutation p.K708E 0.42 possibly_damaging(0.899) TCGA-DD-AAEI-01 17 10358067 10358067 G - MYH4 Frame_Shift_Del p.W833Gfs*2 0.35 TCGA-DD-AAEI-01 17 25748907 25748907 C G TBC1D3P5 RNA 0.33 TCGA-DD-AAEI-01 17 26919151 26919151 C A SPAG5 Missense_Mutation p.D371Y 0.25 deleterious(0) probably_damaging(0.986) TCGA-DD-AAEI-01 17 38801862 38801862 G A SMARCE1 Missense_Mutation p.S6F 0.58 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-DD-AAEI-01 17 39118496 39118496 T A KRT39 Missense_Mutation p.Q305L 0.50 tolerated(1) probably_damaging(0.999) TCGA-DD-AAEI-01 17 43893892 43893892 A T CRHR1 Missense_Mutation p.Q62L 0.71 tolerated(0.31) benign(0.008) TCGA-DD-AAEI-01 17 62532722 62532722 A G CEP95 Missense_Mutation p.I691M 0.36 tolerated(0.21) benign(0.442) TCGA-DD-AAEI-01 17 7579521 7579521 C - TP53 Frame_Shift_Del p.E56Kfs*67 0.37 TCGA-DD-AAEI-01 18 14105451 14105454 AGGT - ZNF519 Frame_Shift_Del p.Y362Lfs*174 0.18 TCGA-DD-AAEI-01 18 2772286 2772286 A T SMCHD1 Silent p.S1697S 0.34 TCGA-DD-AAEI-01 19 10087234 10087234 C T COL5A3 Silent p.P1114P 0.30 TCGA-DD-AAEI-01 19 12405592 12405592 C T ZNF44 5'UTR 0.42 TCGA-DD-AAEI-01 19 13263929 13263929 G T IER2 5'UTR 0.34 TCGA-DD-AAEI-01 19 3981359 3981359 T G EEF2 Missense_Mutation p.K330T 0.36 tolerated(0.19) possibly_damaging(0.505) TCGA-DD-AAEI-01 19 4422733 4422733 G A CHAF1A Silent p.E396E 0.35 TCGA-DD-AAEI-01 19 44891428 44891428 G A ZNF285 Missense_Mutation p.R327C 0.33 tolerated(0.2) benign(0.001) TCGA-DD-AAEI-01 19 49539063 49539063 G C CGB1 Missense_Mutation p.P91R 0.37 tolerated(0.14) benign(0.387) TCGA-DD-AAEI-01 19 50961957 50961957 G T MYBPC2 Missense_Mutation p.G818W 0.32 deleterious(0) probably_damaging(1) TCGA-DD-AAEI-01 19 5790068 5790068 G C DUS3L Missense_Mutation p.S126C 0.27 deleterious(0.01) benign(0.063) TCGA-DD-AAEI-01 19 6752638 6752638 C T SH2D3A Missense_Mutation p.G566D 0.10 deleterious(0.01) benign(0.035) TCGA-DD-AAEI-01 1 15382644 15382644 A T KAZN Missense_Mutation p.M262L 0.36 tolerated(0.17) benign(0.001) TCGA-DD-AAEI-01 1 171484941 171484941 A G PRRC2C Missense_Mutation p.K155E 0.36 unknown(0) TCGA-DD-AAEI-01 1 186088326 186088326 C A HMCN1 Missense_Mutation p.A3951E 0.35 probably_damaging(0.962) TCGA-DD-AAEI-01 1 27876698 27876698 C T AHDC1 Silent p.P643P 0.39 TCGA-DD-AAEI-01 1 40562825 40562825 G T PPT1 Missense_Mutation p.P29Q 0.31 tolerated(0.47) benign(0.002) TCGA-DD-AAEI-01 1 53716470 53716470 G T LRP8 Silent p.T856T 0.34 TCGA-DD-AAEI-01 1 76397715 76397715 C A ASB17 Missense_Mutation p.D88Y 0.35 deleterious_low_confidence(0) benign(0.151) TCGA-DD-AAEI-01 1 85406668 85406668 T A MCOLN2 Missense_Mutation p.K285I 0.32 deleterious(0.01) possibly_damaging(0.881) TCGA-DD-AAEI-01 1 915103 915103 G A C1orf170 Missense_Mutation p.P342L 0.42 deleterious(0.05) possibly_damaging(0.651) TCGA-DD-AAEI-01 20 18506573 18506573 G - SEC23B Frame_Shift_Del p.E278Rfs*31 0.22 TCGA-DD-AAEI-01 20 2637321 2637321 G T NOP56 Intron 0.38 TCGA-DD-AAEI-01 20 9424869 9424869 T A PLCB4 Silent p.S941S 0.39 TCGA-DD-AAEI-01 21 37742093 37742093 G A MORC3 Missense_Mutation p.M809I 0.35 tolerated(0.45) benign(0.017) TCGA-DD-AAEI-01 22 50636978 50636996 GAGGAGCCAGTGCCCCCGC - TRABD 3'UTR 0.30 TCGA-DD-AAEI-01 2 101023123 101023123 C A CHST10 Missense_Mutation p.W5C 0.25 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-DD-AAEI-01 2 109087121 109087121 T A GCC2 Missense_Mutation p.S446T 0.36 tolerated(0.07) probably_damaging(0.98) TCGA-DD-AAEI-01 2 132021745 132021745 G A POTEE Missense_Mutation p.R906Q 0.20 deleterious_low_confidence(0.04) possibly_damaging(0.485) TCGA-DD-AAEI-01 2 152581406 152581406 C T NEB Missense_Mutation p.E158K 0.34 probably_damaging(0.991) TCGA-DD-AAEI-01 2 162738921 162738921 T A SLC4A10 Silent p.I387I 0.34 TCGA-DD-AAEI-01 2 170684512 170684512 G C UBR3 Missense_Mutation p.Q165H 0.34 tolerated(0.08) possibly_damaging(0.694) TCGA-DD-AAEI-01 2 21231201 21231202 - A APOB Frame_Shift_Ins p.G2847Wfs*5 0.25 TCGA-DD-AAEI-01 2 220046857 220046857 A C FAM134A Silent p.R380R 0.30 TCGA-DD-AAEI-01 2 220497642 220497642 A - SLC4A3 Frame_Shift_Del p.H424Tfs*7 0.23 TCGA-DD-AAEI-01 2 230253101 230253101 C T DNER Missense_Mutation p.D579N 0.18 deleterious(0) benign(0.126) TCGA-DD-AAEI-01 2 242758032 242758032 G A NEU4 Silent p.P384P 0.34 TCGA-DD-AAEI-01 2 31457454 31457454 T A EHD3 5'UTR 0.39 TCGA-DD-AAEI-01 2 61632843 61632843 C T USP34 Silent p.E184E 0.35 TCGA-DD-AAEI-01 2 69014971 69014971 G A ARHGAP25 Splice_Site p.X117_splice 0.31 TCGA-DD-AAEI-01 2 80529433 80529433 G C LRRTM1 Missense_Mutation p.I504M 0.38 tolerated(0.06) probably_damaging(0.986) TCGA-DD-AAEI-01 2 84838966 84838966 G A DNAH6 Missense_Mutation p.A1155T 0.33 tolerated(0.08) benign(0.067) TCGA-DD-AAEI-01 2 86075201 86075201 G T ST3GAL5 Missense_Mutation p.P149T 0.36 tolerated(0.72) benign(0.008) TCGA-DD-AAEI-01 3 112997029 112997029 A T BOC Missense_Mutation p.S543C 0.39 deleterious(0) probably_damaging(1) TCGA-DD-AAEI-01 3 113380094 113380094 T A KIAA2018 Missense_Mutation p.K145N 0.32 probably_damaging(0.999) TCGA-DD-AAEI-01 3 13613082 13613082 G A FBLN2 Silent p.P409P 0.30 TCGA-DD-AAEI-01 3 140123468 140123468 A T CLSTN2 Missense_Mutation p.K166M 0.39 deleterious(0.01) probably_damaging(0.92) TCGA-DD-AAEI-01 3 142215316 142215316 T A ATR Missense_Mutation p.R1929W 0.41 deleterious(0) probably_damaging(1) TCGA-DD-AAEI-01 3 170732355 170732355 G C SLC2A2 Missense_Mutation p.L92V 0.34 tolerated(0.11) benign(0.014) TCGA-DD-AAEI-01 3 193856046 193856046 C T HES1 3'UTR 0.36 TCGA-DD-AAEI-01 3 195460216 195460216 G T MUC20 3'UTR 0.29 TCGA-DD-AAEI-01 3 48229454 48229454 G T CDC25A 5'UTR 0.34 TCGA-DD-AAEI-01 3 48310031 48310031 G T ZNF589 Missense_Mutation p.G284C 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AAEI-01 3 48310032 48310032 G T ZNF589 Missense_Mutation p.G284V 0.37 deleterious(0) probably_damaging(0.996) TCGA-DD-AAEI-01 3 50685633 50685633 T C MAPKAPK3 3'UTR 0.30 TCGA-DD-AAEI-01 3 57493370 57493370 C T DNAH12 Silent p.Q299Q 0.40 TCGA-DD-AAEI-01 4 128564999 128564999 G A INTU Missense_Mutation p.R157Q 0.34 tolerated(0.5) benign(0.013) TCGA-DD-AAEI-01 4 16168391 16168391 T A TAPT1 Missense_Mutation p.S447C 0.56 deleterious(0) probably_damaging(1) TCGA-DD-AAEI-01 4 185940790 185940790 G A HELT Missense_Mutation p.E93K 0.33 tolerated_low_confidence(0.35) benign(0.002) TCGA-DD-AAEI-01 4 47850031 47850031 T A NFXL1 3'UTR 0.33 TCGA-DD-AAEI-01 4 89444729 89444729 C T PYURF Silent p.K41K 0.18 TCGA-DD-AAEI-01 5 108679977 108679977 T A PJA2 Missense_Mutation p.S639C 0.36 tolerated(0.12) possibly_damaging(0.659) TCGA-DD-AAEI-01 5 1295127 1295154 GCTTCCCACGTGCGCAGCAGGACGCAGC - TERT 5'UTR 0.21 TCGA-DD-AAEI-01 5 1295161 1295161 T G TERT 5'UTR 0.22 TCGA-DD-AAEI-01 5 132197519 132197519 C T GDF9 Missense_Mutation p.R376K 0.32 tolerated(0.34) benign(0.019) TCGA-DD-AAEI-01 5 1325908 1325908 C T CLPTM1L Silent p.L368L 0.35 TCGA-DD-AAEI-01 5 140209202 140209202 C T PCDHA6 Missense_Mutation p.S509L 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.55) TCGA-DD-AAEI-01 5 140595753 140595753 C T PCDHB13 Silent p.L686L 0.33 TCGA-DD-AAEI-01 5 161495110 161495110 T C GABRG2 Silent p.P35P 0.42 TCGA-DD-AAEI-01 5 169138990 169138990 C T DOCK2 Nonsense_Mutation p.R512* 0.34 TCGA-DD-AAEI-01 5 176778777 176778777 G A LMAN2 5'UTR 0.50 TCGA-DD-AAEI-01 5 177310834 177310834 G A RP11-423H2.1 RNA 0.14 TCGA-DD-AAEI-01 5 179036548 179036549 - G RUFY1 3'UTR 0.30 TCGA-DD-AAEI-01 5 61694687 61694687 G C DIMT1 Missense_Mutation p.P88A 0.35 deleterious(0.04) benign(0.003) TCGA-DD-AAEI-01 6 121768058 121768058 G A GJA1 Missense_Mutation p.G22E 0.28 deleterious(0) probably_damaging(1) TCGA-DD-AAEI-01 6 13286433 13286433 A T TBC1D7 Intron 0.21 TCGA-DD-AAEI-01 6 138817433 138817433 A G NHSL1 Missense_Mutation p.F93S 0.33 deleterious(0) probably_damaging(0.998) TCGA-DD-AAEI-01 6 26376247 26376247 A T BTN3A2 Intron 0.30 TCGA-DD-AAEI-01 6 33410881 33410881 C T SYNGAP1 Missense_Mutation p.P851L 0.42 tolerated(0.11) benign(0.058) TCGA-DD-AAEI-01 6 36937832 36937832 T G MTCH1 Missense_Mutation p.K344Q 0.32 tolerated(0.34) benign(0.293) TCGA-DD-AAEI-01 6 36993582 36993582 G T FGD2 Missense_Mutation p.R491S 0.35 deleterious(0.01) possibly_damaging(0.639) TCGA-DD-AAEI-01 6 66063431 66063431 T G EYS Missense_Mutation p.Y460S 0.13 tolerated(0.37) benign(0.038) TCGA-DD-AAEI-01 6 73935167 73935167 C G KHDC1L 5'UTR 0.06 TCGA-DD-AAEI-01 7 137092670 137092670 G A DGKI Silent p.Y965Y 0.54 TCGA-DD-AAEI-01 7 148895458 148895458 A C ZNF282 Missense_Mutation p.M67L 0.27 tolerated(0.19) benign(0.109) TCGA-DD-AAEI-01 7 3658807 3658807 T C SDK1 Missense_Mutation p.W132R 0.11 tolerated(0.14) probably_damaging(0.969) TCGA-DD-AAEI-01 7 47976458 47976458 T A PKD1L1 Missense_Mutation p.D128V 0.41 deleterious_low_confidence(0.03) benign(0.004) TCGA-DD-AAEI-01 7 50169362 50169362 A T C7orf72 Missense_Mutation p.D234V 0.35 deleterious(0.03) benign(0.302) TCGA-DD-AAEI-01 7 77649096 77649097 - TGAA MAGI2 Frame_Shift_Ins p.A1302Ffs*140 0.28 TCGA-DD-AAEI-01 7 81579781 81579781 G T CACNA2D1 Missense_Mutation p.S1068Y 0.42 deleterious(0.01) probably_damaging(0.922) TCGA-DD-AAEI-01 7 91793161 91793162 TA - LRRD1 Frame_Shift_Del p.I452Nfs*7 0.16 TCGA-DD-AAEI-01 8 125565918 125565918 T C MTSS1 Missense_Mutation p.Y528C 0.23 tolerated(0.26) probably_damaging(0.998) TCGA-DD-AAEI-01 8 63951424 63951424 G A GGH 5'UTR 0.20 TCGA-DD-AAEI-01 8 70594495 70594495 A G SLCO5A1 Missense_Mutation p.V569A 0.05 deleterious(0) probably_damaging(0.997) TCGA-DD-AAEI-01 9 117120428 117120428 C G AKNA Missense_Mutation p.V838L 0.44 tolerated(0.29) benign(0.002) TCGA-DD-AAEI-01 9 139393656 139393656 G A NOTCH1 Missense_Mutation p.T1997M 0.41 deleterious(0) probably_damaging(1) TCGA-DD-AAEI-01 9 139917341 139917341 A C ABCA2 Intron 0.35 TCGA-DD-AAEI-01 9 19119797 19119797 G T PLIN2 Missense_Mutation p.L210M 0.33 tolerated(1) benign(0.001) TCGA-DD-AAEI-01 9 21217149 21217149 G A IFNA16 Silent p.C52C 0.37 TCGA-DD-AAEI-01 9 21385205 21385205 C A IFNA2 Missense_Mutation p.A42S 0.39 tolerated(0.29) possibly_damaging(0.543) TCGA-DD-AAEI-01 9 446496 446496 G T DOCK8 Missense_Mutation p.G1903W 0.46 deleterious(0) probably_damaging(1) TCGA-DD-AAEI-01 9 78942937 78942937 C A PCSK5 Missense_Mutation p.S1424Y 0.32 deleterious(0.03) benign(0.316) TCGA-DD-AAEI-01 9 99296248 99296248 A G CDC14B Missense_Mutation p.C303R 0.32 deleterious(0) probably_damaging(0.995) TCGA-DD-AAEI-01 X 100880947 100880947 T G ARMCX3 Missense_Mutation p.N326K 0.72 tolerated(0.61) benign(0.025) TCGA-DD-AAEI-01 X 13681525 13681525 T C TCEANC Missense_Mutation p.C330R 0.70 deleterious(0) probably_damaging(1) TCGA-DD-AAEI-01 X 154456663 154456663 A T VBP1 Intron 0.61 TCGA-DD-AAEI-01 X 20185787 20185787 G C RPS6KA3 Missense_Mutation p.Q508E 0.67 tolerated(0.1) possibly_damaging(0.583) TCGA-DD-AAEI-01 X 99596912 99596912 A C PCDH19 Missense_Mutation p.M946R 0.17 tolerated(0.53) benign(0.003) TCGA-DD-AAEK-01 10 103530257 103530257 G A FGF8 Silent p.P188P 0.15 TCGA-DD-AAEK-01 10 128860039 128860039 A C DOCK1 Missense_Mutation p.K794T 0.07 deleterious(0) benign(0.403) TCGA-DD-AAEK-01 10 15875655 15875655 T C FAM188A Missense_Mutation p.D235G 0.16 deleterious(0) probably_damaging(1) TCGA-DD-AAEK-01 10 34690773 34690773 T C PARD3 Missense_Mutation p.I263V 0.06 tolerated(0.4) benign(0) TCGA-DD-AAEK-01 10 43014775 43014775 T C ZNF37BP RNA 0.21 TCGA-DD-AAEK-01 10 55663063 55663063 T G PCDH15 Missense_Mutation p.K1147N 0.13 tolerated(0.15) benign(0.12) TCGA-DD-AAEK-01 10 70426952 70426952 A C TET1 Missense_Mutation p.T1538P 0.12 deleterious(0) probably_damaging(0.945) TCGA-DD-AAEK-01 10 75842271 75842271 A T VCL Missense_Mutation p.K281N 0.11 tolerated(0.12) probably_damaging(0.999) TCGA-DD-AAEK-01 10 79397504 79397504 C T KCNMA1 5'Flank 0.67 TCGA-DD-AAEK-01 10 82187098 82187098 A G FAM213A Missense_Mutation p.Y141C 0.14 deleterious(0) probably_damaging(0.991) TCGA-DD-AAEK-01 10 99991445 99991445 G A R3HCC1L Splice_Site p.X654_splice 0.19 TCGA-DD-AAEK-01 11 101793445 101793445 C T KIAA1377 Nonsense_Mutation p.R68* 0.20 TCGA-DD-AAEK-01 11 111594880 111594880 A C SIK2 3'UTR 0.12 TCGA-DD-AAEK-01 11 121360805 121360805 C G SORL1 Silent p.V248V 0.22 TCGA-DD-AAEK-01 11 126143301 126143301 C G FOXRED1 Missense_Mutation p.A163G 0.13 deleterious(0) probably_damaging(0.989) TCGA-DD-AAEK-01 11 49598204 49598204 C T RP11-707M1.1 RNA 0.21 TCGA-DD-AAEK-01 11 56380101 56380101 C G OR5M1 Missense_Mutation p.R293P 0.24 deleterious(0) possibly_damaging(0.901) TCGA-DD-AAEK-01 11 60059725 60059725 G A MS4A4A Missense_Mutation p.M23I 0.24 tolerated(0.44) benign(0.023) TCGA-DD-AAEK-01 12 100453094 100453094 T C UHRF1BP1L Missense_Mutation p.H654R 0.35 deleterious(0) probably_damaging(0.991) TCGA-DD-AAEK-01 12 46233237 46233237 A G ARID2 Missense_Mutation p.I486V 0.15 tolerated(1) benign(0) TCGA-DD-AAEK-01 12 57594316 57594316 G T LRP1 Missense_Mutation p.C3369F 0.18 probably_damaging(0.999) TCGA-DD-AAEK-01 12 5853336 5853336 G A ANO2 Silent p.F442F 0.23 TCGA-DD-AAEK-01 13 103474471 103474471 A G BIVM-ERCC5 Missense_Mutation p.Y260C 0.28 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-DD-AAEK-01 13 32698496 32698496 A G FRY Missense_Mutation p.I180V 0.04 tolerated(0.22) benign(0.268) TCGA-DD-AAEK-01 13 36410249 36410249 C G DCLK1 Missense_Mutation p.A384P 0.24 tolerated(0.22) possibly_damaging(0.455) TCGA-DD-AAEK-01 13 49281602 49281602 C G CYSLTR2 Missense_Mutation p.L217V 0.27 deleterious(0.01) possibly_damaging(0.73) TCGA-DD-AAEK-01 13 53624695 53624695 A C OLFM4 Missense_Mutation p.Y441S 0.30 deleterious(0) probably_damaging(1) TCGA-DD-AAEK-01 13 95235445 95235445 T C TGDS Missense_Mutation p.Y120C 0.37 deleterious(0.04) probably_damaging(0.935) TCGA-DD-AAEK-01 14 102552400 102552400 T A HSP90AA1 Missense_Mutation p.E197V 0.14 deleterious_low_confidence(0) possibly_damaging(0.665) TCGA-DD-AAEK-01 14 21964732 21964732 A G TOX4 Missense_Mutation p.R612G 0.18 deleterious(0) possibly_damaging(0.879) TCGA-DD-AAEK-01 14 21964917 21964917 A G TOX4 3'UTR 0.33 TCGA-DD-AAEK-01 15 57998942 57998942 G A POLR2M 5'UTR 0.15 TCGA-DD-AAEK-01 15 91474733 91474733 T C HDDC3 3'UTR 0.14 TCGA-DD-AAEK-01 16 2814150 2814150 A C SRRM2 Missense_Mutation p.R1207S 0.14 unknown(0) TCGA-DD-AAEK-01 16 28944736 28944736 G T CD19 Missense_Mutation p.L247F 0.37 tolerated(0.11) benign(0.09) TCGA-DD-AAEK-01 16 70562901 70562901 A G SF3B3 Missense_Mutation p.M66V 0.17 tolerated(0.23) benign(0.002) TCGA-DD-AAEK-01 16 81922861 81922861 T A PLCG2 Missense_Mutation p.F284I 0.20 tolerated(0.07) benign(0.446) TCGA-DD-AAEK-01 17 15539431 15539431 C T TRIM16 Silent p.E256E 0.30 TCGA-DD-AAEK-01 17 45286729 45286729 C T MYL4 Intron 0.28 TCGA-DD-AAEK-01 17 46620510 46620510 C A HOXB2 Missense_Mutation p.D331Y 0.17 deleterious(0) possibly_damaging(0.612) TCGA-DD-AAEK-01 17 56833485 56833485 C T PPM1E Missense_Mutation p.P43S 0.06 tolerated_low_confidence(0.5) unknown(0) TCGA-DD-AAEK-01 17 57733326 57733326 A G CLTC Missense_Mutation p.I303V 0.23 tolerated(0.48) benign(0.003) TCGA-DD-AAEK-01 17 7214903 7214903 G C EIF5A Missense_Mutation p.V167L 0.45 deleterious(0.03) possibly_damaging(0.456) TCGA-DD-AAEK-01 17 7318376 7318376 G T NLGN2 Missense_Mutation p.G316C 0.41 deleterious(0) probably_damaging(1) TCGA-DD-AAEK-01 17 73501979 73501979 T C CASKIN2 Missense_Mutation p.Y253C 0.25 deleterious(0) probably_damaging(0.994) TCGA-DD-AAEK-01 17 73922395 73922395 T C FBF1 Silent p.K222K 0.12 TCGA-DD-AAEK-01 17 76121316 76121316 G T TMC6 Silent p.L153L 0.07 TCGA-DD-AAEK-01 18 32887458 32887458 C G ZNF271 RNA 0.20 TCGA-DD-AAEK-01 18 56001068 56001068 A C NEDD4L Silent p.R337R 0.16 TCGA-DD-AAEK-01 19 11978256 11978256 T C ZNF439 Silent p.F124F 0.33 TCGA-DD-AAEK-01 19 19369378 19369378 G A HAPLN4 Silent p.N257N 0.37 TCGA-DD-AAEK-01 19 46974172 46974172 C T PNMAL1 Missense_Mutation p.E41K 0.24 deleterious(0.01) possibly_damaging(0.486) TCGA-DD-AAEK-01 19 56166440 56166440 G T U2AF2 5'UTR 0.08 TCGA-DD-AAEK-01 19 8196669 8196669 A G FBN3 Missense_Mutation p.C587R 0.19 deleterious(0) probably_damaging(0.998) TCGA-DD-AAEK-01 1 111957295 111957295 A C OVGP1 Missense_Mutation p.L610V 0.19 tolerated_low_confidence(1) benign(0) TCGA-DD-AAEK-01 1 12785194 12785194 G T AADACL3 Missense_Mutation p.R95L 0.44 deleterious(0) probably_damaging(0.983) TCGA-DD-AAEK-01 1 1326223 1326223 G A CCNL2 Missense_Mutation p.R228C 0.10 deleterious(0) probably_damaging(0.997) TCGA-DD-AAEK-01 1 150129195 150129195 C A PLEKHO1 Missense_Mutation p.R137S 0.35 tolerated(0.06) probably_damaging(0.987) TCGA-DD-AAEK-01 1 151239737 151239737 C G PSMD4 Missense_Mutation p.A351G 0.09 deleterious(0.02) possibly_damaging(0.715) TCGA-DD-AAEK-01 1 155171290 155171290 C T THBS3 Missense_Mutation p.R416Q 0.33 tolerated(0.12) benign(0.019) TCGA-DD-AAEK-01 1 161140408 161140408 A C PPOX Splice_Site p.X367_splice 0.11 TCGA-DD-AAEK-01 1 225600294 225600294 C A LBR Missense_Mutation p.G316C 0.14 deleterious(0) probably_damaging(0.923) TCGA-DD-AAEK-01 1 2338158 2338158 C A PEX10 Splice_Site p.X279_splice 0.05 TCGA-DD-AAEK-01 1 246729469 246729469 A T TFB2M 5'UTR 0.22 TCGA-DD-AAEK-01 1 46088424 46088429 GGATTT - CCDC17 In_Frame_Del p.E245_R247delinsG 0.12 TCGA-DD-AAEK-01 20 23028717 23028717 G A THBD Silent p.H475H 0.05 TCGA-DD-AAEK-01 20 36888575 36888575 G A KIAA1755 Intron 0.18 TCGA-DD-AAEK-01 20 57599829 57599840 GGGACATTAACT - TUBB1 Missense_Mutation 0.12 TCGA-DD-AAEK-01 20 58470629 58470631 TTC - SYCP2 In_Frame_Del p.R509del 0.10 TCGA-DD-AAEK-01 21 30968882 30968882 G T GRIK1 Silent p.G405G 0.16 TCGA-DD-AAEK-01 22 38349756 38349756 G C POLR2F 5'UTR 0.31 TCGA-DD-AAEK-01 22 38694819 38694819 T C CSNK1E Missense_Mutation p.Y286C 0.13 deleterious_low_confidence(0) benign(0.403) TCGA-DD-AAEK-01 2 101019079 101019080 - GG CHST10 Frame_Shift_Ins p.M47Pfs*5 0.15 TCGA-DD-AAEK-01 2 128065249 128065249 T C MAP3K2 Missense_Mutation p.Y589C 0.32 tolerated(0.19) possibly_damaging(0.779) TCGA-DD-AAEK-01 2 137814760 137814760 G A THSD7B Missense_Mutation p.V304I 0.37 tolerated(0.07) possibly_damaging(0.593) TCGA-DD-AAEK-01 2 173879264 173879264 C T RAPGEF4 Silent p.V577V 0.37 TCGA-DD-AAEK-01 2 179463397 179463397 A G TTN Intron 0.14 TCGA-DD-AAEK-01 2 179643471 179643471 G T TTN Intron 0.46 TCGA-DD-AAEK-01 2 183604864 183604864 A G DNAJC10 Intron 0.35 TCGA-DD-AAEK-01 2 198508996 198508996 G T RFTN2 Missense_Mutation p.S108R 0.06 deleterious(0.04) benign(0.162) TCGA-DD-AAEK-01 2 234916713 234916713 G T TRPM8 Splice_Site p.X1077_splice 0.15 TCGA-DD-AAEK-01 2 241569491 241569491 C A GPR35 Missense_Mutation p.A72E 0.31 deleterious(0) probably_damaging(1) TCGA-DD-AAEK-01 2 242662681 242662681 A - ING5 Frame_Shift_Del p.K226Nfs*48 0.23 TCGA-DD-AAEK-01 2 37129895 37129895 C A STRN Splice_Site p.X164_splice 0.29 TCGA-DD-AAEK-01 2 51255005 51255005 T C NRXN1 Missense_Mutation p.K136R 0.33 tolerated(0.35) benign(0.003) TCGA-DD-AAEK-01 3 186459974 186459974 G A KNG1 Missense_Mutation p.G597S 0.14 tolerated(1) benign(0.001) TCGA-DD-AAEK-01 3 3182289 3182289 A C TRNT1 Missense_Mutation p.K146N 0.29 tolerated(0.11) benign(0.244) TCGA-DD-AAEK-01 3 41266112 41266112 T G CTNNB1 Missense_Mutation p.S37A 0.12 deleterious(0) possibly_damaging(0.844) TCGA-DD-AAEK-01 3 44763338 44763338 A G ZNF502 Silent p.R343R 0.15 TCGA-DD-AAEK-01 3 47162061 47162061 T C SETD2 Silent p.K1355K 0.32 TCGA-DD-AAEK-01 3 52545761 52545761 G T STAB1 Silent p.L961L 0.15 TCGA-DD-AAEK-01 3 57107893 57107893 A C SPATA12 Silent p.P57P 0.04 TCGA-DD-AAEK-01 3 7620197 7620197 C A GRM7 Missense_Mutation p.T535K 0.16 tolerated(0.11) benign(0) TCGA-DD-AAEK-01 3 9789039 9789039 C T BRPF1 3'UTR 0.16 TCGA-DD-AAEK-01 4 153332420 153332420 G C FBXW7 Intron 0.22 TCGA-DD-AAEK-01 4 7436188 7436188 C T PSAPL1 Missense_Mutation p.C140Y 0.13 deleterious(0) probably_damaging(0.995) TCGA-DD-AAEK-01 5 112227702 112227702 A G ZRSR1 Silent p.K122K 0.18 TCGA-DD-AAEK-01 5 11385065 11385065 C T CTNND2 Missense_Mutation p.G297S 0.22 tolerated(0.93) benign(0.001) TCGA-DD-AAEK-01 5 54603925 54603925 A C SKIV2L2 Missense_Mutation p.E28D 0.15 tolerated(0.32) benign(0.006) TCGA-DD-AAEK-01 5 56155650 56155650 C T MAP3K1 Nonsense_Mutation p.R248* 0.29 TCGA-DD-AAEK-01 6 105219250 105219271 AATTTACAGGAATACCTAAAAA - HACE1 Splice_Site p.X672_splice 0.18 TCGA-DD-AAEK-01 6 149699603 149699604 - A TAB2 Frame_Shift_Ins p.I185Nfs*6 0.23 TCGA-DD-AAEK-01 6 165713968 165713968 T G C6orf118 Missense_Mutation p.Q254P 0.19 deleterious(0) probably_damaging(0.977) TCGA-DD-AAEK-01 6 24423703 24423703 T C MRS2 Intron 0.17 TCGA-DD-AAEK-01 6 24423706 24423706 T C MRS2 Intron 0.18 TCGA-DD-AAEK-01 6 31750583 31750583 T C VARS Missense_Mutation p.Y601C 0.15 deleterious(0) probably_damaging(0.997) TCGA-DD-AAEK-01 6 33287996 33288025 AGGGCCCTGGGAGACAAAGAAGTTTCTCTA - DAXX Splice_Site p.X418_splice 0.19 TCGA-DD-AAEK-01 6 35096885 35096885 G T TCP11 Missense_Mutation p.P117H 0.24 deleterious(0) probably_damaging(1) TCGA-DD-AAEK-01 6 44199123 44199123 A G SLC29A1 Silent p.K263K 0.28 TCGA-DD-AAEK-01 6 74481156 74481156 A C CD109 Missense_Mutation p.K560T 0.31 tolerated(0.15) benign(0.044) TCGA-DD-AAEK-01 7 11514132 11514132 C A THSD7A Missense_Mutation p.C694F 0.22 deleterious(0) probably_damaging(1) TCGA-DD-AAEK-01 7 122774580 122774580 G A SLC13A1 Silent p.R272R 0.26 TCGA-DD-AAEK-01 7 134225837 134225837 A T AKR1B10 Missense_Mutation p.Y316F 0.13 tolerated(0.42) benign(0.014) TCGA-DD-AAEK-01 7 150779558 150779558 C T TMUB1 Silent p.T31T 0.26 TCGA-DD-AAEK-01 7 2687142 2687142 C A TTYH3 Silent p.R166R 0.16 TCGA-DD-AAEK-01 7 32914636 32914636 C A KBTBD2 Nonsense_Mutation p.E102* 0.12 TCGA-DD-AAEK-01 7 6662092 6662092 C T ZNF853 Silent p.C490C 0.53 TCGA-DD-AAEK-01 7 74239547 74239547 G A GTF2IRD2 Silent p.P91P 0.10 TCGA-DD-AAEK-01 8 123966039 123966039 G A ZHX2 Silent p.K763K 0.21 TCGA-DD-AAEK-01 8 124243859 124243859 T A C8orf76 Missense_Mutation p.N166Y 0.47 tolerated(1) possibly_damaging(0.632) TCGA-DD-AAEK-01 8 145693163 145693163 G A KIFC2 Splice_Site p.X227_splice 0.13 TCGA-DD-AAEK-01 9 140058118 140058118 C A GRIN1 Missense_Mutation p.A835D 0.30 deleterious(0) probably_damaging(0.969) TCGA-DD-AAVP-01 10 17147494 17147494 T G CUBN Missense_Mutation p.I398L 0.49 tolerated(0.07) benign(0.004) TCGA-DD-AAVP-01 10 42905481 42905481 G T CCNYL2 RNA 0.28 TCGA-DD-AAVP-01 10 69750905 69750906 - A HERC4 Frame_Shift_Ins p.L441Ffs*4 0.24 TCGA-DD-AAVP-01 10 8106026 8106026 C T GATA3 Silent p.Y283Y 0.32 TCGA-DD-AAVP-01 10 81064989 81064989 G C ZMIZ1 Splice_Site p.X785_splice 0.13 TCGA-DD-AAVP-01 10 82034403 82034403 A T MAT1A Missense_Mutation p.Y320N 0.35 deleterious(0) probably_damaging(1) TCGA-DD-AAVP-01 11 118369130 118369130 C G KMT2A Missense_Mutation p.L1950V 0.10 probably_damaging(0.997) TCGA-DD-AAVP-01 11 19173800 19173800 C T ZDHHC13 Missense_Mutation p.A227V 0.36 tolerated(0.05) benign(0.054) TCGA-DD-AAVP-01 11 55659167 55659167 C T TRIM51 3'UTR 0.38 TCGA-DD-AAVP-01 11 56086232 56086232 C T OR8K3 Silent p.L150L 0.32 TCGA-DD-AAVP-01 11 58919496 58919496 G T FAM111A Nonsense_Mutation p.E119* 0.35 TCGA-DD-AAVP-01 11 64023939 64023939 T A PLCB3 Missense_Mutation p.Y264N 0.36 deleterious(0) probably_damaging(0.997) TCGA-DD-AAVP-01 11 6500162 6500162 A G ARFIP2 Missense_Mutation p.F115L 0.40 tolerated(1) probably_damaging(0.997) TCGA-DD-AAVP-01 11 86518742 86518742 G C PRSS23 Silent p.G19G 0.40 TCGA-DD-AAVP-01 12 41387040 41387040 A G CNTN1 Missense_Mutation p.I694M 0.33 tolerated(0.19) benign(0.005) TCGA-DD-AAVP-01 12 51818690 51818690 G T SLC4A8 5'UTR 0.36 TCGA-DD-AAVP-01 13 35624441 35624441 A G NBEA Missense_Mutation p.H294R 0.42 deleterious(0) probably_damaging(0.992) TCGA-DD-AAVP-01 13 46358106 46358106 G A SIAH3 Silent p.H74H 0.62 TCGA-DD-AAVP-01 14 19378063 19378063 C T OR11H12 Missense_Mutation p.A157V 0.08 tolerated(0.71) benign(0.014) TCGA-DD-AAVP-01 14 37754588 37754588 T G MIPOL1 Missense_Mutation p.L187V 0.38 deleterious(0) probably_damaging(0.967) TCGA-DD-AAVP-01 14 42360572 42360572 T C LRFN5 Missense_Mutation p.V502A 0.35 tolerated(0.08) benign(0.109) TCGA-DD-AAVP-01 14 64991444 64991444 A G ZBTB1 3'UTR 0.49 TCGA-DD-AAVP-01 14 74531657 74531657 G C CCDC176 3'UTR 0.61 TCGA-DD-AAVP-01 14 93118183 93118183 G A RIN3 Silent p.P263P 0.08 TCGA-DD-AAVP-01 15 29346055 29346055 C A APBA2 5'UTR 0.44 TCGA-DD-AAVP-01 15 38243492 38243492 G A TMCO5A 3'UTR 0.39 TCGA-DD-AAVP-01 15 42458377 42458377 A T VPS39 Missense_Mutation p.F554I 0.32 tolerated(0.38) benign(0.062) TCGA-DD-AAVP-01 15 73615463 73615463 G T HCN4 Missense_Mutation p.L991M 0.36 tolerated_low_confidence(0.12) unknown(0) TCGA-DD-AAVP-01 15 81598392 81598392 C G IL16 Silent p.P1188P 0.38 TCGA-DD-AAVP-01 15 99465501 99465501 C A IGF1R Missense_Mutation p.P776T 0.32 tolerated(0.16) benign(0.313) TCGA-DD-AAVP-01 16 30536540 30536540 G T ZNF768 Missense_Mutation p.H307Q 0.34 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-DD-AAVP-01 16 32077671 32077671 T C IGHV3OR16-9 Missense_Mutation p.C96R 0.23 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-DD-AAVP-01 16 335428 335428 C A PDIA2 Missense_Mutation p.F304L 0.30 deleterious(0.03) benign(0.107) TCGA-DD-AAVP-01 16 67977971 67977971 T G LCAT Missense_Mutation p.T12P 0.39 deleterious_low_confidence(0.02) benign(0) TCGA-DD-AAVP-01 17 43531021 43531021 C A PLEKHM1 Missense_Mutation p.D733Y 0.44 deleterious(0) probably_damaging(0.998) TCGA-DD-AAVP-01 17 79914895 79914895 T A NOTUM Nonsense_Mutation p.K251* 0.29 TCGA-DD-AAVP-01 19 1084297 1084297 G A HMHA1 Missense_Mutation p.E1022K 0.08 tolerated_low_confidence(0.27) benign(0.006) TCGA-DD-AAVP-01 19 13318818 13318818 C G CACNA1A Missense_Mutation p.S2277T 0.03 benign(0.294) TCGA-DD-AAVP-01 19 34291425 34291425 G T KCTD15 Silent p.A22A 0.43 TCGA-DD-AAVP-01 19 34925843 34925843 G A UBA2 Silent p.G143G 0.38 TCGA-DD-AAVP-01 19 35435358 35435358 C T ZNF30 Silent p.A497A 0.32 TCGA-DD-AAVP-01 19 48789079 48789079 A G ZNF114 Silent p.R66R 0.42 TCGA-DD-AAVP-01 19 50366972 50366984 CCGTCACCGGCTT - PNKP Frame_Shift_Del p.K260Afs*98 0.22 TCGA-DD-AAVP-01 19 55751023 55751023 C T PPP6R1 Missense_Mutation p.S531N 0.29 deleterious(0) probably_damaging(0.962) TCGA-DD-AAVP-01 19 6690690 6690690 C A C3 Missense_Mutation p.V1147F 0.41 deleterious(0) probably_damaging(0.998) TCGA-DD-AAVP-01 19 9583900 9583900 A G ZNF560 Silent p.L65L 0.31 TCGA-DD-AAVP-01 1 1147185 1147185 A G TNFRSF4 Missense_Mutation p.L221P 0.07 deleterious(0) probably_damaging(0.999) TCGA-DD-AAVP-01 1 11848092 11848092 A T C1orf167 Missense_Mutation p.K1303I 0.42 tolerated(0.1) possibly_damaging(0.844) TCGA-DD-AAVP-01 1 1361567 1361567 A T TMEM88B Silent p.T20T 0.36 TCGA-DD-AAVP-01 1 153362952 153362952 G C S100A8 Silent p.S20S 0.16 TCGA-DD-AAVP-01 1 155247573 155247573 G T HCN3 Silent p.V64V 0.64 TCGA-DD-AAVP-01 1 158054346 158054346 C G KIRREL Missense_Mutation p.Q163E 0.05 tolerated(0.08) possibly_damaging(0.495) TCGA-DD-AAVP-01 1 167404461 167404461 C T CD247 Intron 0.24 TCGA-DD-AAVP-01 1 186056407 186056407 T G HMCN1 Missense_Mutation p.C3035W 0.22 probably_damaging(0.998) TCGA-DD-AAVP-01 1 190068054 190068054 G T BRINP3 Silent p.T465T 0.21 TCGA-DD-AAVP-01 1 210332796 210332796 T A SYT14 Missense_Mutation p.I507K 0.25 deleterious(0) probably_damaging(0.974) TCGA-DD-AAVP-01 1 214170224 214170224 C T PROX1 Missense_Mutation p.L116F 0.23 deleterious(0.04) probably_damaging(0.999) TCGA-DD-AAVP-01 1 228496077 228496077 C A OBSCN Silent p.T5201T 0.24 TCGA-DD-AAVP-01 1 36937988 36937988 C T CSF3R Missense_Mutation p.G283D 0.18 tolerated(0.62) benign(0.018) TCGA-DD-AAVP-01 1 40882719 40882719 C T SMAP2 Missense_Mutation p.T372I 0.41 tolerated(0.14) benign(0.075) TCGA-DD-AAVP-01 1 45288095 45288095 T C PTCH2 Missense_Mutation p.T1202A 0.30 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-DD-AAVP-01 1 85598554 85598555 - A WDR63 Frame_Shift_Ins p.E852Rfs*6 0.12 TCGA-DD-AAVP-01 20 44590731 44590731 C A ZNF335 Missense_Mutation p.A542S 0.39 tolerated(1) benign(0.011) TCGA-DD-AAVP-01 22 19435059 19435059 G A C22orf39 Missense_Mutation p.P49S 0.42 tolerated(0.09) benign(0.228) TCGA-DD-AAVP-01 22 19960689 19960693 GAGCG T ARVCF Frame_Shift_Del p.S796Yfs*67 0.53 TCGA-DD-AAVP-01 2 108487445 108487445 A T RGPD4 Silent p.G995G 0.31 TCGA-DD-AAVP-01 2 186671383 186671383 G A FSIP2 Missense_Mutation p.A5873T 0.42 probably_damaging(0.998) TCGA-DD-AAVP-01 2 219001520 219001520 A T CXCR2 3'UTR 0.28 TCGA-DD-AAVP-01 2 219536701 219536701 C A RNF25 5'UTR 0.40 TCGA-DD-AAVP-01 2 220344828 220344828 A C SPEG Missense_Mutation p.N1770H 0.39 probably_damaging(0.996) TCGA-DD-AAVP-01 2 27121441 27121441 A G DPYSL5 Missense_Mutation p.E25G 0.41 tolerated(0.3) benign(0.417) TCGA-DD-AAVP-01 2 27481124 27481124 A T SLC30A3 Missense_Mutation p.L110Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-DD-AAVP-01 2 28615842 28615842 G T FOSL2 5'UTR 0.19 TCGA-DD-AAVP-01 2 28615843 28615843 C A FOSL2 5'UTR 0.19 TCGA-DD-AAVP-01 2 89953168 89953168 T A IGKV1D-33 Nonsense_Mutation p.L55* 0.51 TCGA-DD-AAVP-01 2 96259967 96259967 A G TRIM43 Missense_Mutation p.T66A 0.41 deleterious(0.01) benign(0.299) TCGA-DD-AAVP-01 3 142188335 142188335 A G ATR Silent p.Y2132Y 0.39 TCGA-DD-AAVP-01 3 172834939 172834939 C A SPATA16 Missense_Mutation p.A195S 0.31 deleterious(0) possibly_damaging(0.567) TCGA-DD-AAVP-01 3 172834940 172834940 C A SPATA16 Missense_Mutation p.L194F 0.31 tolerated(0.05) benign(0.022) TCGA-DD-AAVP-01 3 190167637 190167637 C A TMEM207 5'UTR 0.49 TCGA-DD-AAVP-01 3 38651286 38651286 G A SCN5A Silent p.N291N 0.36 TCGA-DD-AAVP-01 3 41266107 41266107 T G CTNNB1 Missense_Mutation p.I35S 0.34 deleterious(0) possibly_damaging(0.852) TCGA-DD-AAVP-01 3 74313296 74313296 T A CNTN3 3'UTR 0.22 TCGA-DD-AAVP-01 4 156137303 156137303 T C NPY2R 3'UTR 0.04 TCGA-DD-AAVP-01 4 16177756 16177756 C A TAPT1 Missense_Mutation p.D365Y 0.42 deleterious(0) probably_damaging(0.965) TCGA-DD-AAVP-01 4 25836840 25836840 C T SEL1L3 Missense_Mutation p.R280H 0.29 tolerated(0.19) benign(0.006) TCGA-DD-AAVP-01 4 46390951 46390951 T C GABRA2 Intron 0.33 TCGA-DD-AAVP-01 4 55564702 55564702 C T KIT Missense_Mutation p.S197L 0.40 deleterious(0) probably_damaging(1) TCGA-DD-AAVP-01 4 57975953 57975953 G C IGFBP7 Intron 0.50 TCGA-DD-AAVP-01 4 85719181 85719181 G A WDFY3 Missense_Mutation p.P968L 0.31 deleterious(0) benign(0.186) TCGA-DD-AAVP-01 5 115318983 115318983 G T AQPEP Splice_Site p.X232_splice 0.37 TCGA-DD-AAVP-01 5 127714560 127714560 G A FBN2 Missense_Mutation p.P543S 0.06 deleterious(0.01) probably_damaging(0.994) TCGA-DD-AAVP-01 5 168189636 168189636 G A SLIT3 Silent p.P506P 0.31 TCGA-DD-AAVP-01 5 172662220 172662220 C T NKX2-5 5'UTR 0.40 TCGA-DD-AAVP-01 5 175307263 175307263 A C CPLX2 3'UTR 0.47 TCGA-DD-AAVP-01 5 33951511 33951511 T C SLC45A2 Intron 0.22 TCGA-DD-AAVP-01 5 38523608 38523608 G A LIFR Silent p.N158N 0.28 TCGA-DD-AAVP-01 6 114277278 114277278 C A HDAC2 Missense_Mutation p.M132I 0.66 tolerated(1) benign(0) TCGA-DD-AAVP-01 6 153316354 153316354 G A MTRF1L Missense_Mutation p.S147L 0.38 tolerated(0.16) benign(0.012) TCGA-DD-AAVP-01 6 169620434 169620434 T G THBS2 Splice_Site p.X1124_splice 0.38 TCGA-DD-AAVP-01 6 169646339 169646339 G T THBS2 Missense_Mutation p.S216Y 0.38 deleterious(0.03) possibly_damaging(0.883) TCGA-DD-AAVP-01 6 4130968 4130968 A T C6orf201 3'UTR 0.42 TCGA-DD-AAVP-01 6 43274226 43274226 C T CRIP3 Missense_Mutation p.E120K 0.39 deleterious(0.04) probably_damaging(0.995) TCGA-DD-AAVP-01 6 46976900 46976900 C A GPR110 Silent p.V757V 0.35 TCGA-DD-AAVP-01 6 47251829 47251829 A T TNFRSF21 Missense_Mutation p.V363E 0.43 deleterious(0) probably_damaging(0.963) TCGA-DD-AAVP-01 6 55147195 55147195 C A HCRTR2 Silent p.L426L 0.09 TCGA-DD-AAVP-01 7 101844891 101844891 G C CUX1 Missense_Mutation p.E783Q 0.29 tolerated(0.21) unknown(0) TCGA-DD-AAVP-01 7 131241049 131241050 - CGACGC PODXL In_Frame_Ins p.S23_P24insAS 0.44 TCGA-DD-AAVP-01 7 132192829 132192829 A C PLXNA4 Silent p.S208S 0.41 TCGA-DD-AAVP-01 7 142622595 142622595 C A TRPV5 Intron 0.17 TCGA-DD-AAVP-01 7 31377778 31377778 G C NEUROD6 3'UTR 0.31 TCGA-DD-AAVP-01 8 145738712 145738712 C T RECQL4 Silent p.R784R 0.35 TCGA-DD-AAVP-01 8 25287265 25287265 A T KCTD9 3'UTR 0.08 TCGA-DD-AAVP-01 8 81888943 81888943 G A PAG1 Missense_Mutation p.P379S 0.32 tolerated(0.14) benign(0.017) TCGA-DD-AAVP-01 8 95188826 95188826 G T CDH17 Silent p.R123R 0.35 TCGA-DD-AAVP-01 9 125239744 125239744 C A OR1J1 Silent p.A154A 0.37 TCGA-DD-AAVP-01 9 127215460 127215460 T C GPR144 Missense_Mutation p.F162L 0.36 deleterious(0.02) possibly_damaging(0.896) TCGA-DD-AAVP-01 9 34381529 34381529 G T C9orf24 Intron 0.43 TCGA-DD-AAVP-01 9 5906982 5906982 A C MLANA Missense_Mutation p.K91T 0.30 tolerated(0.38) benign(0.005) TCGA-DD-AAVP-01 9 95896554 95896554 C T NINJ1 5'UTR 0.53 TCGA-DD-AAVP-01 X 101624744 101624744 A G NXF2B Intron 0.15 TCGA-DD-AAVP-01 X 123182871 123182871 A G STAG2 Missense_Mutation p.D279G 0.31 deleterious(0.03) possibly_damaging(0.678) TCGA-DD-AAVP-01 X 128645791 128645791 T C SMARCA1 Missense_Mutation p.K267R 0.93 tolerated(0.06) benign(0.029) TCGA-DD-AAVP-01 X 134990278 134990278 A T SAGE1 Missense_Mutation p.E397V 0.89 deleterious(0) possibly_damaging(0.895) TCGA-DD-AAVP-01 X 2712585 2712585 A G XG Missense_Mutation p.N88S 0.88 tolerated(0.75) possibly_damaging(0.801) TCGA-DD-AAVQ-01 10 105796292 105796292 C A COL17A1 Missense_Mutation p.D1126Y 0.24 probably_damaging(0.986) TCGA-DD-AAVQ-01 10 16556558 16556558 G A C1QL3 Missense_Mutation p.T246M 0.07 deleterious(0) probably_damaging(1) TCGA-DD-AAVQ-01 10 48438408 48438408 G A GDF10 Silent p.S101S 0.20 TCGA-DD-AAVQ-01 10 61666139 61666139 C A CCDC6 Missense_Mutation p.G15V 0.45 tolerated_low_confidence(0.17) benign(0.061) TCGA-DD-AAVQ-01 10 74890728 74890728 A G NUDT13 3'UTR 0.24 TCGA-DD-AAVQ-01 10 99623838 99623838 A T GOLGA7B Missense_Mutation p.K97M 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-DD-AAVQ-01 11 1154232 1154232 T C MUC5AC Silent p.H26H 0.29 TCGA-DD-AAVQ-01 11 123989361 123989361 C T VWA5A Silent p.S197S 0.32 TCGA-DD-AAVQ-01 11 64662891 64662891 G T ATG2A Missense_Mutation p.D1817E 0.06 deleterious(0) probably_damaging(0.965) TCGA-DD-AAVQ-01 11 76062358 76062362 CATGA - PRKRIR Frame_Shift_Del p.V611Gfs*14 0.19 TCGA-DD-AAVQ-01 12 130926833 130926833 T A RIMBP2 Missense_Mutation p.K338M 0.17 deleterious(0.03) possibly_damaging(0.469) TCGA-DD-AAVQ-01 12 49431178 49431178 G A KMT2D Nonsense_Mutation p.R3321* 0.20 TCGA-DD-AAVQ-01 13 103385419 103385419 C T CCDC168 Silent p.A1247A 0.25 TCGA-DD-AAVQ-01 13 61985239 61985239 T C PCDH20 3'UTR 0.32 TCGA-DD-AAVQ-01 14 20925369 20925369 T C APEX1 Missense_Mutation p.L220P 0.26 deleterious(0) probably_damaging(1) TCGA-DD-AAVQ-01 14 94912770 94912770 G A SERPINA11 Missense_Mutation p.A272V 0.21 tolerated(0.21) possibly_damaging(0.773) TCGA-DD-AAVQ-01 15 28412958 28412958 C A HERC2 Missense_Mutation p.D3477Y 0.20 benign(0.332) TCGA-DD-AAVQ-01 15 43668706 43668706 C A TUBGCP4 Missense_Mutation p.H71Q 0.26 tolerated(0.74) benign(0.001) TCGA-DD-AAVQ-01 15 75968668 75968668 G T CSPG4 Missense_Mutation p.D2064E 0.10 deleterious(0.02) probably_damaging(0.979) TCGA-DD-AAVQ-01 16 1715078 1715078 A G CRAMP1L Silent p.P897P 0.21 TCGA-DD-AAVQ-01 17 37901708 37901708 G A GRB7 Missense_Mutation p.D399N 0.16 deleterious(0) probably_damaging(0.999) TCGA-DD-AAVQ-01 17 76075532 76075532 C T TNRC6C Silent p.T1086T 0.24 TCGA-DD-AAVQ-01 18 21743143 21743143 T C OSBPL1A Silent p.%3D 0.14 TCGA-DD-AAVQ-01 18 21743153 21743153 T C OSBPL1A Missense_Mutation p.D948G 0.12 deleterious(0) probably_damaging(0.954) TCGA-DD-AAVQ-01 18 3129395 3129395 T G MYOM1 Missense_Mutation p.S877R 0.09 tolerated(0.16) benign(0.186) TCGA-DD-AAVQ-01 18 74692266 74692266 G A RP11-862L9.3 5'Flank 0.24 TCGA-DD-AAVQ-01 19 1257098 1257098 G A MIDN Missense_Mutation p.A412T 0.21 deleterious(0.04) possibly_damaging(0.499) TCGA-DD-AAVQ-01 19 13054677 13054677 G T CALR Nonsense_Mutation p.E402* 0.22 TCGA-DD-AAVQ-01 19 13616815 13616815 T A CACNA1A Missense_Mutation p.N75I 0.25 possibly_damaging(0.844) TCGA-DD-AAVQ-01 19 19379472 19379472 C A TM6SF2 Missense_Mutation p.Q192H 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-DD-AAVQ-01 19 38383766 38383766 T C WDR87 Silent p.Q820Q 0.25 TCGA-DD-AAVQ-01 19 44097345 44097345 C A IRGQ Silent p.V235V 0.30 TCGA-DD-AAVQ-01 1 1026959 1026959 G A C1orf159 Intron 0.40 TCGA-DD-AAVQ-01 1 11886262 11886262 G T CLCN6 Missense_Mutation p.R233L 0.14 deleterious(0) possibly_damaging(0.844) TCGA-DD-AAVQ-01 1 161560935 161560935 G A FCGR2C 5'Flank 0.08 TCGA-DD-AAVQ-01 1 197704922 197704922 G A DENND1B Intron 0.14 TCGA-DD-AAVQ-01 1 229623290 229623290 T C NUP133 Missense_Mutation p.E422G 0.05 tolerated(0.1) benign(0.247) TCGA-DD-AAVQ-01 1 245772752 245772752 G A KIF26B Silent p.S612S 0.17 TCGA-DD-AAVQ-01 1 248458151 248458151 C A OR2T12 Missense_Mutation p.A244S 0.49 tolerated(0.41) benign(0.119) TCGA-DD-AAVQ-01 1 249106244 249106244 T C SH3BP5L Missense_Mutation p.Q346R 0.19 deleterious_low_confidence(0) benign(0.242) TCGA-DD-AAVQ-01 20 49247308 49247308 G T FAM65C Missense_Mutation p.A26E 0.30 deleterious(0) probably_damaging(0.994) TCGA-DD-AAVQ-01 20 746297 746297 G A SLC52A3 Missense_Mutation p.P41L 0.29 deleterious(0) probably_damaging(0.988) TCGA-DD-AAVQ-01 20 746298 746298 G T SLC52A3 Missense_Mutation p.P41T 0.29 deleterious(0) probably_damaging(0.927) TCGA-DD-AAVQ-01 20 9510365 9510365 C T LAMP5 Silent p.L247L 0.11 TCGA-DD-AAVQ-01 21 30380212 30380212 T G RWDD2B Missense_Mutation p.N199H 0.32 deleterious(0) probably_damaging(0.982) TCGA-DD-AAVQ-01 22 22868555 22868555 A G ZNF280A Missense_Mutation p.I467T 0.31 tolerated(0.23) benign(0.001) TCGA-DD-AAVQ-01 2 192265476 192265476 C T MYO1B Missense_Mutation p.A795V 0.06 tolerated(0.33) possibly_damaging(0.534) TCGA-DD-AAVQ-01 2 192700699 192700699 C T SDPR Missense_Mutation p.D410N 0.50 tolerated_low_confidence(0.06) benign(0.01) TCGA-DD-AAVQ-01 2 226447236 226447236 A G NYAP2 Missense_Mutation p.N368S 0.20 deleterious(0.02) benign(0.119) TCGA-DD-AAVQ-01 2 24033262 24033262 C A ATAD2B Missense_Mutation p.R793I 0.14 deleterious(0) benign(0.032) TCGA-DD-AAVQ-01 3 138739004 138739004 C A PRR23B Missense_Mutation p.R167L 0.11 tolerated(0.4) benign(0.226) TCGA-DD-AAVQ-01 3 195787062 195787062 T C TFRC Missense_Mutation p.T509A 0.08 tolerated(0.21) benign(0.245) TCGA-DD-AAVQ-01 3 41266136 41266136 T C CTNNB1 Missense_Mutation p.S45P 0.13 deleterious(0) probably_damaging(0.939) TCGA-DD-AAVQ-01 3 47371504 47371504 G C KLHL18 Silent p.L155L 0.29 TCGA-DD-AAVQ-01 4 103718541 103718541 T C UBE2D3 3'UTR 0.06 TCGA-DD-AAVQ-01 4 142653941 142653941 T C IL15 Silent p.N143N 0.12 TCGA-DD-AAVQ-01 4 156618214 156618214 T A GUCY1A3 Missense_Mutation p.S65R 0.18 tolerated(0.17) benign(0.077) TCGA-DD-AAVQ-01 4 5170142 5170142 G T STK32B Missense_Mutation p.M75I 0.08 deleterious(0) benign(0.181) TCGA-DD-AAVQ-01 4 57871518 57871518 T C POLR2B Missense_Mutation p.I336T 0.07 deleterious(0.02) possibly_damaging(0.794) TCGA-DD-AAVQ-01 4 77662788 77662788 G T SHROOM3 Silent p.T1154T 0.15 TCGA-DD-AAVQ-01 5 147553855 147553855 G T SPINK14 Missense_Mutation p.C57F 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-DD-AAVQ-01 5 98129071 98129071 C A RGMB Missense_Mutation p.Q351K 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-DD-AAVQ-01 6 119232871 119232871 G A MCM9 Missense_Mutation p.A365V 0.05 deleterious(0.02) probably_damaging(0.986) TCGA-DD-AAVQ-01 6 170038751 170038751 C A WDR27 Missense_Mutation p.D585Y 0.04 deleterious(0) probably_damaging(0.996) TCGA-DD-AAVQ-01 6 28327497 28327497 C G ZKSCAN3 Missense_Mutation p.S45C 0.11 tolerated(0.09) benign(0.076) TCGA-DD-AAVQ-01 6 44137079 44137079 G T CAPN11 Missense_Mutation p.K50N 0.26 tolerated(0.21) benign(0.19) TCGA-DD-AAVQ-01 6 56955015 56955015 C T ZNF451 5'UTR 0.24 TCGA-DD-AAVQ-01 7 56084931 56084931 A G PSPH Silent p.F139F 0.24 TCGA-DD-AAVQ-01 7 79828588 79828588 C T GNAI1 Silent p.G117G 0.32 TCGA-DD-AAVQ-01 7 92734833 92734833 G A SAMD9 Missense_Mutation p.P193L 0.17 deleterious(0) probably_damaging(1) TCGA-DD-AAVQ-01 8 143957167 143957167 T C CYP11B1 Missense_Mutation p.E361G 0.04 tolerated(0.29) probably_damaging(0.955) TCGA-DD-AAVQ-01 8 144344194 144344194 T C ZFP41 3'UTR 0.26 TCGA-DD-AAVQ-01 8 144789899 144789899 C T CCDC166 Silent p.L127L 0.07 TCGA-DD-AAVQ-01 8 21846524 21846524 T G XPO7 Missense_Mutation p.L600V 0.27 deleterious(0) probably_damaging(0.94) TCGA-DD-AAVQ-01 8 95686717 95686717 C T ESRP1 Missense_Mutation p.P545L 0.18 deleterious(0) probably_damaging(1) TCGA-DD-AAVQ-01 9 130423380 130423380 G T STXBP1 Splice_Site p.X109_splice 0.11 TCGA-DD-AAVQ-01 9 27169531 27169531 C G TEK Missense_Mutation p.L178V 0.06 tolerated(0.19) benign(0.001) TCGA-DD-AAVQ-01 9 82340070 82340070 T A TLE4 3'UTR 0.24 TCGA-DD-AAVQ-01 X 12939521 12939521 G A TLR8 Missense_Mutation p.D788N 0.21 tolerated(1) benign(0.032) TCGA-DD-AAVQ-01 X 49137827 49137827 A T PPP1R3F Intron 0.32 TCGA-DD-AAVR-01 10 112541079 112541079 C T RBM20 Nonsense_Mutation p.Q238* 0.36 TCGA-DD-AAVR-01 10 116735283 116735283 A G TRUB1 3'UTR 0.25 TCGA-DD-AAVR-01 10 134713078 134713078 A T TTC40 Missense_Mutation p.L1006Q 0.28 deleterious(0.02) probably_damaging(0.973) TCGA-DD-AAVR-01 10 21806056 21806056 G A SKIDA1 Silent p.A232A 0.15 TCGA-DD-AAVR-01 11 103026161 103026161 A G DYNC2H1 Silent p.L1225L 0.21 TCGA-DD-AAVR-01 11 1093075 1093075 A G MUC2 Missense_Mutation p.I1632V 0.19 unknown(0) TCGA-DD-AAVR-01 11 48510973 48510973 T A OR4A47 Missense_Mutation p.L210Q 0.23 deleterious_low_confidence(0.01) probably_damaging(0.961) TCGA-DD-AAVR-01 11 59224678 59224678 T A OR4D6 Missense_Mutation p.L82Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-DD-AAVR-01 11 62534045 62534045 C G POLR2G 3'UTR 0.35 TCGA-DD-AAVR-01 11 64568236 64568236 C A MAP4K2 Missense_Mutation p.W242L 0.31 deleterious(0) probably_damaging(0.953) TCGA-DD-AAVR-01 11 65562094 65562094 G A OVOL1 Missense_Mutation p.R135H 0.25 deleterious(0) probably_damaging(0.91) TCGA-DD-AAVR-01 12 19427544 19427545 - A PLEKHA5 Frame_Shift_Ins p.N316Kfs*8 0.22 TCGA-DD-AAVR-01 12 45686687 45686687 T C ANO6 Intron 0.20 TCGA-DD-AAVR-01 12 46231303 46231303 T G ARID2 Silent p.L381L 0.23 TCGA-DD-AAVR-01 12 48376330 48376330 A C COL2A1 Silent p.P752P 0.27 TCGA-DD-AAVR-01 12 49412616 49412616 C T PRKAG1 5'Flank 0.22 TCGA-DD-AAVR-01 12 56669864 56669864 T C CS Missense_Mutation p.D235G 0.25 deleterious(0) probably_damaging(0.969) TCGA-DD-AAVR-01 12 95867960 95867960 C T METAP2 Missense_Mutation p.A2V 0.20 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-DD-AAVR-01 13 36220056 36220056 G T NBEA Intron 0.20 TCGA-DD-AAVR-01 13 46563046 46563046 A G ZC3H13 Silent p.H377H 0.28 TCGA-DD-AAVR-01 14 68112357 68112357 C A ARG2 Intron 0.29 TCGA-DD-AAVR-01 14 77493770 77493770 C T IRF2BPL Silent p.Q122Q 0.15 TCGA-DD-AAVR-01 14 77493785 77493785 C T IRF2BPL Silent p.Q117Q 0.16 TCGA-DD-AAVR-01 14 99640931 99640931 C T BCL11B Missense_Mutation p.G748S 0.33 deleterious(0.03) benign(0.024) TCGA-DD-AAVR-01 15 32450760 32450760 T A CHRNA7 Missense_Mutation p.L278Q 0.18 deleterious(0) probably_damaging(0.998) TCGA-DD-AAVR-01 15 44852441 44852460 TTTAAGTGGAAATTGATGAC - EIF3J Splice_Site p.X191_splice 0.17 TCGA-DD-AAVR-01 15 91423406 91423406 G A FURIN Missense_Mutation p.A487T 0.23 deleterious(0) benign(0.041) TCGA-DD-AAVR-01 16 27709794 27709794 G A KIAA0556 Silent p.K362K 0.26 TCGA-DD-AAVR-01 16 70605100 70605100 A T SF3B3 Nonsense_Mutation p.K1171* 0.50 TCGA-DD-AAVR-01 17 31340841 31340841 G A ASIC2 3'UTR 0.36 TCGA-DD-AAVR-01 17 37876052 37876052 G A ERBB2 Silent p.L637L 0.24 TCGA-DD-AAVR-01 17 40277843 40277843 C T RAB5C Silent p.Q236Q 0.10 TCGA-DD-AAVR-01 17 47590143 47590143 C T NGFR Silent p.N352N 0.04 TCGA-DD-AAVR-01 19 55814112 55814112 G A BRSK1 Missense_Mutation p.R302H 0.23 deleterious(0.03) possibly_damaging(0.522) TCGA-DD-AAVR-01 1 145688244 145688244 G A RNF115 3'UTR 0.16 TCGA-DD-AAVR-01 1 150238703 150238703 G C APH1A Intron 0.14 TCGA-DD-AAVR-01 1 150238802 150238802 A T APH1A Intron 0.15 TCGA-DD-AAVR-01 1 150532681 150532681 C T ADAMTSL4 3'UTR 0.25 TCGA-DD-AAVR-01 1 151019153 151019153 G C BNIPL Missense_Mutation p.G355A 0.28 tolerated(0.26) benign(0.008) TCGA-DD-AAVR-01 1 151316709 151316709 T A RFX5 Silent p.P173P 0.20 TCGA-DD-AAVR-01 1 166944511 166944511 C G ILDR2 5'UTR 0.16 TCGA-DD-AAVR-01 1 167666369 167666369 C A RCSD1 Missense_Mutation p.P170T 0.18 deleterious(0) probably_damaging(1) TCGA-DD-AAVR-01 1 32131190 32131190 G A COL16A1 Silent p.G1162G 0.18 TCGA-DD-AAVR-01 1 33134435 33134435 C T RBBP4 Missense_Mutation p.L194F 0.23 deleterious(0) probably_damaging(0.983) TCGA-DD-AAVR-01 1 76397785 76397785 G A ASB17 Silent p.D64D 0.12 TCGA-DD-AAVR-01 1 93299205 93299205 T A RPL5 Missense_Mutation p.D59E 0.17 deleterious(0.02) probably_damaging(0.975) TCGA-DD-AAVR-01 20 19955803 19955803 C T RIN2 Silent p.S427S 0.07 TCGA-DD-AAVR-01 20 44571777 44571777 G T PCIF1 Nonsense_Mutation p.E239* 0.30 TCGA-DD-AAVR-01 20 62421975 62421975 T C ZBTB46 Missense_Mutation p.K46E 0.19 deleterious(0) possibly_damaging(0.689) TCGA-DD-AAVR-01 21 30380106 30380106 C G RWDD2B Missense_Mutation p.S234T 0.24 tolerated(0.05) benign(0.219) TCGA-DD-AAVR-01 21 38115858 38115858 T C SIM2 Splice_Site p.X389_splice 0.17 TCGA-DD-AAVR-01 22 23438564 23438564 C A GNAZ Missense_Mutation p.L228I 0.27 tolerated(0.22) probably_damaging(0.929) TCGA-DD-AAVR-01 22 37395926 37395926 C T TEX33 Missense_Mutation p.D197N 0.17 tolerated(0.05) benign(0.008) TCGA-DD-AAVR-01 22 50893272 50893272 T A SBF1 Missense_Mutation p.N1595Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-DD-AAVR-01 2 112922614 112922614 G A FBLN7 Missense_Mutation p.R91K 0.28 tolerated(0.3) benign(0.007) TCGA-DD-AAVR-01 2 14776342 14776342 T A FAM84A 3'UTR 0.21 TCGA-DD-AAVR-01 2 152426620 152426620 T - NEB Frame_Shift_Del p.K5802Rfs*51 0.19 TCGA-DD-AAVR-01 2 160269055 160269055 C A BAZ2B Missense_Mutation p.G823V 0.19 probably_damaging(1) TCGA-DD-AAVR-01 2 168103526 168103526 T C XIRP2 Missense_Mutation p.L1875P 0.27 probably_damaging(0.994) TCGA-DD-AAVR-01 2 234402122 234402122 T C USP40 Missense_Mutation p.T967A 0.22 tolerated(0.78) benign(0.002) TCGA-DD-AAVR-01 2 28763246 28763246 C T PLB1 Missense_Mutation p.P238S 0.28 tolerated(0.65) benign(0.001) TCGA-DD-AAVR-01 2 49190880 49190880 C A FSHR Missense_Mutation p.M360I 0.09 deleterious(0.03) possibly_damaging(0.729) TCGA-DD-AAVR-01 2 85622730 85622732 CTT - CAPG In_Frame_Del p.K304del 0.19 TCGA-DD-AAVR-01 3 10413576 10413576 C T ATP2B2 Missense_Mutation p.D526N 0.18 tolerated(0.31) benign(0.224) TCGA-DD-AAVR-01 3 107096716 107096716 C A CCDC54 Silent p.V94V 0.20 TCGA-DD-AAVR-01 3 120320137 120320137 G A NDUFB4 Intron 0.26 TCGA-DD-AAVR-01 3 120489632 120489632 C A GTF2E1 Missense_Mutation p.P169H 0.23 deleterious(0) probably_damaging(0.968) TCGA-DD-AAVR-01 3 125648374 125648374 G C ALG1L Missense_Mutation p.L129V 0.23 deleterious(0.02) probably_damaging(0.996) TCGA-DD-AAVR-01 3 52436363 52436363 T A BAP1 Nonsense_Mutation p.K711* 0.23 TCGA-DD-AAVR-01 3 52442612 52442612 C T BAP1 Missense_Mutation p.G45R 0.26 deleterious(0) probably_damaging(1) TCGA-DD-AAVR-01 4 152637251 152637251 C T PET112 Missense_Mutation p.D225N 0.18 deleterious(0.01) possibly_damaging(0.715) TCGA-DD-AAVR-01 4 3230458 3230458 T C HTT Silent p.S2655S 0.15 TCGA-DD-AAVR-01 4 47850263 47850263 G A NFXL1 Nonsense_Mutation p.Q885* 0.14 TCGA-DD-AAVR-01 4 5747031 5747031 A G EVC Missense_Mutation p.K301R 0.18 tolerated(1) benign(0.004) TCGA-DD-AAVR-01 4 90170448 90170448 T C GPRIN3 Missense_Mutation p.S272G 0.22 tolerated(0.15) benign(0.054) TCGA-DD-AAVR-01 5 171766054 171766054 G A SH3PXD2B Silent p.G685G 0.17 TCGA-DD-AAVR-01 5 74018369 74018369 A C GFM2 Missense_Mutation p.D682E 0.16 tolerated(0.1) benign(0.012) TCGA-DD-AAVR-01 6 112670836 112670836 C T RFPL4B 5'UTR 0.25 TCGA-DD-AAVR-01 6 22297382 22297382 C A PRL 5'UTR 0.36 TCGA-DD-AAVR-01 6 26104199 26104199 A T HIST1H4C Silent p.G8G 0.11 TCGA-DD-AAVR-01 6 26156767 26156769 CCT - HIST1H1E In_Frame_Del p.S51del 0.27 TCGA-DD-AAVR-01 6 30920202 30920202 C T DPCR1 Missense_Mutation p.P1321S 0.13 deleterious(0) benign(0.016) TCGA-DD-AAVR-01 6 42637952 42637952 G A UBR2 Missense_Mutation p.S1335N 0.13 deleterious(0) benign(0.273) TCGA-DD-AAVR-01 6 97561870 97561870 G T KLHL32 Missense_Mutation p.R280L 0.17 tolerated(0.23) benign(0.005) TCGA-DD-AAVR-01 7 100031225 100031225 A G MEPCE 3'UTR 0.37 TCGA-DD-AAVR-01 7 100401052 100401052 C T EPHB4 3'UTR 0.28 TCGA-DD-AAVR-01 7 12610443 12610443 G T SCIN Missense_Mutation p.A11S 0.14 tolerated(0.44) benign(0.007) TCGA-DD-AAVR-01 7 20825271 20825271 C A SP8 Silent p.S55S 0.18 TCGA-DD-AAVR-01 7 73452038 73452038 G A ELN Silent p.A55A 0.24 TCGA-DD-AAVR-01 7 88963559 88963559 C T ZNF804B Silent p.S421S 0.20 TCGA-DD-AAVR-01 8 116426762 116426762 C T TRPS1 Missense_Mutation p.R1125Q 0.17 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DD-AAVR-01 8 22974468 22974468 C T TNFRSF10C Missense_Mutation p.P235L 0.24 deleterious_low_confidence(0) unknown(0) TCGA-DD-AAVR-01 9 111882014 111882014 C A TMEM245 Silent p.V60V 0.33 TCGA-DD-AAVR-01 9 135205038 135205038 T G SETX Silent p.P649P 0.17 TCGA-DD-AAVR-01 X 12701706 12701706 G A FRMPD4 Silent p.S191S 0.47 TCGA-DD-AAVR-01 X 135730388 135730388 C A CD40LG 5'UTR 0.46 TCGA-DD-AAVR-01 X 154493379 154493379 G A RAB39B Silent p.T65T 0.47 TCGA-DD-AAVR-01 X 40526016 40526016 T C MED14 Missense_Mutation p.H1074R 0.44 tolerated(0.36) benign(0.04) TCGA-DD-AAVR-01 X 76711987 76711987 T C FGF16 Missense_Mutation p.S109P 0.40 benign(0.005) TCGA-DD-AAVR-01 X 83126541 83126541 A T CYLC1 Missense_Mutation p.D47V 0.49 deleterious(0.02) benign(0.205) TCGA-DD-AAVR-01 Y 5369284 5369284 G A PCDH11Y Missense_Mutation p.D1106N 0.41 tolerated(0.06) probably_damaging(0.999) TCGA-DD-AAVS-01 10 33510747 33510747 T C NRP1 Silent p.V394V 0.39 TCGA-DD-AAVS-01 10 50255074 50255074 G T VSTM4 Missense_Mutation p.T264K 0.31 tolerated(0.91) benign(0.198) TCGA-DD-AAVS-01 10 93744021 93744021 T C BTAF1 Missense_Mutation p.Y763H 0.31 deleterious(0) probably_damaging(0.984) TCGA-DD-AAVS-01 11 118886070 118886070 G C CCDC84 Missense_Mutation p.D287H 0.37 deleterious(0) probably_damaging(1) TCGA-DD-AAVS-01 11 2424065 2424065 C T TSSC4 Missense_Mutation p.P68S 0.40 tolerated(0.72) benign(0.027) TCGA-DD-AAVS-01 11 4389234 4389234 G A OR52B4 Missense_Mutation p.R98C 0.38 tolerated(0.15) benign(0.002) TCGA-DD-AAVS-01 12 11138987 11138987 T C TAS2R50 Missense_Mutation p.Y158C 0.33 tolerated(0.18) benign(0.073) TCGA-DD-AAVS-01 12 132512745 132512746 CA - EP400 Frame_Shift_Del p.H1765Qfs*11 0.29 TCGA-DD-AAVS-01 13 114793346 114793346 G A RASA3 Silent p.T169T 0.27 TCGA-DD-AAVS-01 14 102026705 102026705 G C DIO3 5'Flank 0.52 TCGA-DD-AAVS-01 14 102026711 102026711 C A DIO3 5'Flank 0.50 TCGA-DD-AAVS-01 14 34269937 34269937 G A NPAS3 Silent p.R808R 0.24 TCGA-DD-AAVS-01 15 48443338 48443338 C A MYEF2 Missense_Mutation p.R446I 0.36 tolerated(0.19) benign(0.175) TCGA-DD-AAVS-01 15 56388062 56388062 T C RFX7 Missense_Mutation p.I622V 0.39 tolerated_low_confidence(0.3) benign(0.001) TCGA-DD-AAVS-01 15 63916053 63916053 C T HERC1 Silent p.A4494A 0.32 TCGA-DD-AAVS-01 15 77329562 77329562 A T PSTPIP1 3'UTR 0.29 TCGA-DD-AAVS-01 16 354369 354369 C A AXIN1 Nonsense_Mutation p.E397* 0.62 TCGA-DD-AAVS-01 17 33288644 33288644 A G ZNF830 Missense_Mutation p.E20G 0.34 deleterious(0) probably_damaging(0.996) TCGA-DD-AAVS-01 17 40947049 40947049 C A WNK4 Silent p.P870P 0.36 TCGA-DD-AAVS-01 17 4848077 4848077 G A RNF167 Silent p.Q273Q 0.34 TCGA-DD-AAVS-01 17 60345601 60345601 C A TBC1D3P2 Splice_Site 0.36 TCGA-DD-AAVS-01 17 73519814 73519814 C T TSEN54 Nonsense_Mutation p.R462* 0.13 TCGA-DD-AAVS-01 17 79205335 79205335 G A ENTHD2 Intron 0.40 TCGA-DD-AAVS-01 17 7951790 7951790 G C ALOX15B Missense_Mutation p.Q646H 0.41 deleterious(0.02) probably_damaging(0.982) TCGA-DD-AAVS-01 18 21001406 21001406 C T TMEM241 Nonsense_Mutation p.W41* 0.42 TCGA-DD-AAVS-01 18 3187611 3187612 - A MYOM1 Frame_Shift_Ins p.A266Cfs*5 0.23 TCGA-DD-AAVS-01 18 64212133 64212133 G A CDH19 Silent p.Y261Y 0.39 TCGA-DD-AAVS-01 19 2413945 2413945 G A TMPRSS9 Missense_Mutation p.S467N 0.36 tolerated(0.68) benign(0.002) TCGA-DD-AAVS-01 19 35617194 35617194 G A LGI4 Missense_Mutation p.R427C 0.41 tolerated(0.08) probably_damaging(0.909) TCGA-DD-AAVS-01 19 48342753 48342753 T A CRX Missense_Mutation p.S143R 0.12 tolerated(0.06) possibly_damaging(0.677) TCGA-DD-AAVS-01 19 9074134 9074134 C T MUC16 Missense_Mutation p.D4438N 0.36 unknown(0) TCGA-DD-AAVS-01 1 100159890 100159890 A G PALMD 3'UTR 0.39 TCGA-DD-AAVS-01 1 149885087 149885087 G A SV2A Silent p.P102P 0.57 TCGA-DD-AAVS-01 1 151665429 151665429 G A SNX27 Missense_Mutation p.D478N 0.26 tolerated(0.08) probably_damaging(0.994) TCGA-DD-AAVS-01 1 209879256 209879256 G - HSD11B1 Frame_Shift_Del p.T64Qfs*33 0.12 TCGA-DD-AAVS-01 1 26158566 26158566 A G MTFR1L 3'UTR 0.68 TCGA-DD-AAVS-01 1 27878374 27878374 G T AHDC1 Missense_Mutation p.P85T 0.10 tolerated_low_confidence(0.56) possibly_damaging(0.803) TCGA-DD-AAVS-01 1 40092821 40092821 G T HEYL Missense_Mutation p.D115E 0.63 deleterious(0.01) probably_damaging(1) TCGA-DD-AAVS-01 20 61436212 61436212 A G OGFR Translation_Start_Site p.M1? 0.06 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-DD-AAVS-01 20 9561354 9561354 G T PAK7 Missense_Mutation p.T143N 0.41 tolerated(0.55) benign(0.005) TCGA-DD-AAVS-01 22 42952641 42952641 C A SERHL2 Intron 0.22 TCGA-DD-AAVS-01 2 11775439 11775439 G T GREB1 Missense_Mutation p.A1752S 0.44 tolerated(1) benign(0.1) TCGA-DD-AAVS-01 2 131356332 131356332 G C CFC1 Missense_Mutation p.Q44E 0.15 tolerated(0.22) benign(0.257) TCGA-DD-AAVS-01 2 141294168 141294168 C T LRP1B Missense_Mutation p.E2542K 0.20 possibly_damaging(0.621) TCGA-DD-AAVS-01 2 172641967 172641967 T C SLC25A12 Silent p.E618E 0.22 TCGA-DD-AAVS-01 2 179365879 179365879 G A PLEKHA3 Missense_Mutation p.D251N 0.26 tolerated(0.1) possibly_damaging(0.752) TCGA-DD-AAVS-01 2 204736111 204736111 G A CTLA4 Silent p.P156P 0.25 TCGA-DD-AAVS-01 2 220353004 220353004 C A SPEG Nonsense_Mutation p.C2610* 0.18 TCGA-DD-AAVS-01 2 24021162 24021162 C T ATAD2B Missense_Mutation p.S829N 0.36 deleterious(0) benign(0.101) TCGA-DD-AAVS-01 2 37208530 37208530 T C HEATR5B 3'UTR 0.39 TCGA-DD-AAVS-01 2 79348711 79348711 C T REG1A Missense_Mutation p.P30S 0.26 tolerated(0.09) possibly_damaging(0.462) TCGA-DD-AAVS-01 2 80136865 80136865 C T CTNNA2 Missense_Mutation p.A333V 0.34 tolerated(0.09) probably_damaging(0.922) TCGA-DD-AAVS-01 2 86439441 86439441 A G MRPL35 3'UTR 0.38 TCGA-DD-AAVS-01 3 107886700 107886700 G C IFT57 Missense_Mutation p.I263M 0.30 tolerated(0.16) benign(0.116) TCGA-DD-AAVS-01 3 124463106 124463106 A G UMPS 3'UTR 0.25 TCGA-DD-AAVS-01 3 48936267 48936267 C G SLC25A20 5'UTR 0.04 TCGA-DD-AAVS-01 4 185309971 185309971 G A IRF2 Missense_Mutation p.R331W 0.60 deleterious(0) probably_damaging(0.998) TCGA-DD-AAVS-01 4 62598783 62598783 A T LPHN3 Missense_Mutation p.R236W 0.06 deleterious(0) probably_damaging(1) TCGA-DD-AAVS-01 5 131013525 131013525 G A FNIP1 Missense_Mutation p.L464F 0.26 deleterious(0) probably_damaging(0.999) TCGA-DD-AAVS-01 5 140166927 140166927 C - PCDHA1 Frame_Shift_Del p.A351Gfs*35 0.22 TCGA-DD-AAVS-01 5 150415262 150415262 T C TNIP1 Missense_Mutation p.I468V 0.31 tolerated(0.07) possibly_damaging(0.565) TCGA-DD-AAVS-01 5 178585721 178585721 C A ADAMTS2 Intron 0.32 TCGA-DD-AAVS-01 5 3600742 3600742 G T IRX1 Missense_Mutation p.R444S 0.31 tolerated(0.07) benign(0.011) TCGA-DD-AAVS-01 5 38427168 38427168 C G EGFLAM Missense_Mutation p.P623R 0.33 tolerated(0.14) benign(0.111) TCGA-DD-AAVS-01 5 69741330 69741330 G A RP11-497H16.9 5'Flank 0.39 TCGA-DD-AAVS-01 6 25776923 25776923 T A SLC17A4 Missense_Mutation p.L363H 0.17 deleterious(0) probably_damaging(1) TCGA-DD-AAVS-01 6 7580097 7580097 C G DSP Missense_Mutation p.S1225C 0.64 possibly_damaging(0.503) TCGA-DD-AAVS-01 7 33136968 33136968 C T RP9 Missense_Mutation p.R107H 0.27 tolerated(0.05) benign(0.001) TCGA-DD-AAVS-01 7 75890890 75890890 G T SRRM3 Missense_Mutation p.R222I 0.36 deleterious(0) unknown(0) TCGA-DD-AAVS-01 9 36589546 36589546 G T MELK Missense_Mutation p.R53L 0.39 deleterious(0) probably_damaging(0.999) TCGA-DD-AAVS-01 9 37487883 37487883 C A POLR1E Silent p.S68S 0.37 TCGA-DD-AAVS-01 X 106039134 106039134 A G RNF128 3'UTR 0.85 TCGA-DD-AAVS-01 X 77393271 77393271 T C TAF9B Missense_Mutation p.Y127C 0.76 deleterious(0) probably_damaging(0.997) TCGA-DD-AAVU-01 10 103789389 103789389 C T C10orf76 Intron 0.38 TCGA-DD-AAVU-01 10 104179696 104179696 G A FBXL15 5'UTR 0.55 TCGA-DD-AAVU-01 10 135352494 135352494 C T CYP2E1 3'UTR 0.57 TCGA-DD-AAVU-01 10 93904825 93904825 T A CPEB3 Missense_Mutation p.S414C 0.31 deleterious(0.05) possibly_damaging(0.662) TCGA-DD-AAVU-01 11 113288785 113288785 G A DRD2 Missense_Mutation p.A120V 0.38 deleterious(0) probably_damaging(0.991) TCGA-DD-AAVU-01 11 46456546 46456546 C T AMBRA1 Missense_Mutation p.D802N 0.48 deleterious(0) possibly_damaging(0.738) TCGA-DD-AAVU-01 11 802041 802041 C T PIDD Missense_Mutation p.R409H 0.43 tolerated(0.1) benign(0.127) TCGA-DD-AAVU-01 11 94040366 94040366 T C FOLR4 Silent p.N121N 0.48 TCGA-DD-AAVU-01 12 109692040 109692040 A G ACACB Missense_Mutation p.I2023V 0.79 tolerated(0.3) benign(0.015) TCGA-DD-AAVU-01 12 53899546 53899546 C G TARBP2 Silent p.G285G 0.83 TCGA-DD-AAVU-01 14 21769132 21769132 A T RPGRIP1 Missense_Mutation p.T76S 0.19 tolerated(0.06) possibly_damaging(0.853) TCGA-DD-AAVU-01 14 21896309 21896309 C T CHD8 Silent p.S440S 0.33 TCGA-DD-AAVU-01 14 29236691 29236691 C A FOXG1 Missense_Mutation p.P69Q 0.05 tolerated_low_confidence(0.1) unknown(0) TCGA-DD-AAVU-01 14 79434578 79434578 T A NRXN3 Missense_Mutation p.S638T 0.63 deleterious(0) possibly_damaging(0.762) TCGA-DD-AAVU-01 14 95053895 95053895 T G SERPINA5 Missense_Mutation p.F66V 0.60 tolerated(0.08) possibly_damaging(0.484) TCGA-DD-AAVU-01 15 32925232 32925232 A G ARHGAP11A Silent p.V386V 0.46 TCGA-DD-AAVU-01 15 62990037 62990037 G T TLN2 Silent p.G481G 0.44 TCGA-DD-AAVU-01 15 65689263 65689263 C T IGDCC4 Silent p.A302A 0.53 TCGA-DD-AAVU-01 16 27460420 27460420 C T IL21R Missense_Mutation p.A478V 0.95 tolerated(0.16) benign(0.286) TCGA-DD-AAVU-01 16 360038 360038 G A AXIN1 Nonsense_Mutation p.Q351* 0.83 TCGA-DD-AAVU-01 17 1678371 1678371 T C SERPINF1 Silent p.F221F 0.82 TCGA-DD-AAVU-01 17 43190626 43190626 C T PLCD3 Splice_Site p.X665_splice 0.44 TCGA-DD-AAVU-01 17 45915690 45915690 C T SCRN2 Silent p.R355R 0.39 TCGA-DD-AAVU-01 17 54923060 54923060 A G DGKE Missense_Mutation p.K212E 0.45 tolerated(0.29) benign(0.035) TCGA-DD-AAVU-01 17 7578268 7578268 A C TP53 Missense_Mutation p.L194R 0.90 deleterious(0) probably_damaging(1) TCGA-DD-AAVU-01 17 76456336 76456336 C T DNAH17 Missense_Mutation p.V3101I 0.63 benign(0.38) TCGA-DD-AAVU-01 17 7720679 7720679 A G DNAH2 Silent p.G3322G 0.86 TCGA-DD-AAVU-01 18 50731599 50731599 G C DCC Silent p.G529G 0.36 TCGA-DD-AAVU-01 18 60028929 60028929 G A TNFRSF11A Silent p.L211L 0.47 TCGA-DD-AAVU-01 19 38024289 38024289 G - ZNF793 Frame_Shift_Del p.G75Afs*23 0.31 TCGA-DD-AAVU-01 19 53911921 53911921 A G ZNF765 Silent p.T371T 0.37 TCGA-DD-AAVU-01 19 6896547 6896547 G A EMR1 Missense_Mutation p.C78Y 0.47 deleterious(0) probably_damaging(0.996) TCGA-DD-AAVU-01 19 7697616 7697616 T A PCP2 Missense_Mutation p.Q51L 0.47 tolerated(0.1) benign(0.034) TCGA-DD-AAVU-01 19 804891 804891 G A PTBP1 Silent p.Q223Q 0.50 TCGA-DD-AAVU-01 19 9968430 9968430 G A OLFM2 Silent p.L107L 0.50 TCGA-DD-AAVU-01 1 103348775 103348775 G A COL11A1 Missense_Mutation p.P1651S 0.52 unknown(0) TCGA-DD-AAVU-01 1 152883756 152883756 C T IVL Nonsense_Mutation p.Q495* 0.34 TCGA-DD-AAVU-01 1 154306627 154306627 A C ATP8B2 Missense_Mutation p.S245R 0.35 tolerated(0.15) benign(0.396) TCGA-DD-AAVU-01 1 15888720 15888720 C G DNAJC16 Missense_Mutation p.T413S 0.36 tolerated(0.43) benign(0.005) TCGA-DD-AAVU-01 1 160616886 160616886 G - SLAMF1 5'UTR 0.24 TCGA-DD-AAVU-01 1 16199516 16199516 A G SPEN Missense_Mutation p.I97V 0.46 benign(0.07) TCGA-DD-AAVU-01 1 17559395 17559395 A T PADI1 Missense_Mutation p.S415C 0.39 deleterious(0) probably_damaging(0.989) TCGA-DD-AAVU-01 1 228475833 228475833 T C OBSCN Missense_Mutation p.C3724R 0.53 probably_damaging(1) TCGA-DD-AAVU-01 1 233270849 233270849 G T PCNXL2 Missense_Mutation p.S1249R 0.43 tolerated(0.35) benign(0.125) TCGA-DD-AAVU-01 1 75626757 75626757 T G LHX8 3'UTR 0.36 TCGA-DD-AAVU-01 1 90178412 90178412 G A LRRC8C Missense_Mutation p.E95K 0.06 tolerated(0.1) possibly_damaging(0.505) TCGA-DD-AAVU-01 1 92979087 92979124 TATATATATATATATATATATATATATATATATATATG - EVI5 3'UTR 0.78 TCGA-DD-AAVU-01 20 25459756 25459756 C T NINL Silent p.E668E 0.53 TCGA-DD-AAVU-01 20 30037860 30037860 T C DEFB123 Silent p.Y29Y 0.40 TCGA-DD-AAVU-01 20 4707904 4707904 T C PRND 3'UTR 0.41 TCGA-DD-AAVU-01 21 46888354 46888354 C T COL18A1 Missense_Mutation p.T282I 0.31 unknown(0) TCGA-DD-AAVU-01 22 37272068 37272068 T A NCF4 Nonsense_Mutation p.L334* 0.38 TCGA-DD-AAVU-01 2 178098862 178098862 T G NFE2L2 Missense_Mutation p.Q61H 0.24 tolerated(0.27) benign(0.225) TCGA-DD-AAVU-01 2 179435762 179435762 C G TTN Missense_Mutation p.D25033H 0.47 TCGA-DD-AAVU-01 2 189449050 189449050 C T GULP1 Missense_Mutation p.S223F 0.43 deleterious(0.02) possibly_damaging(0.736) TCGA-DD-AAVU-01 2 215657042 215657042 G A BARD1 Silent p.L115L 0.39 TCGA-DD-AAVU-01 2 3624107 3624107 A G RPS7 Missense_Mutation p.I60V 0.51 tolerated(0.28) benign(0.074) TCGA-DD-AAVU-01 2 85049140 85049140 G C TRABD2A Missense_Mutation p.H424Q 0.44 tolerated_low_confidence(0.51) benign(0.005) TCGA-DD-AAVU-01 2 85921908 85921908 T C GNLY Intron 0.48 TCGA-DD-AAVU-01 3 32148195 32148195 G C GPD1L 5'UTR 0.32 TCGA-DD-AAVU-01 3 32996071 32996071 A T CCR4 3'UTR 0.47 TCGA-DD-AAVU-01 3 4508802 4508802 G T SUMF1 Missense_Mutation p.A43E 0.40 tolerated(0.18) possibly_damaging(0.565) TCGA-DD-AAVU-01 3 48678931 48678931 A G CELSR3 Missense_Mutation p.Y2951H 0.34 deleterious_low_confidence(0.05) benign(0.012) TCGA-DD-AAVU-01 4 15937929 15937929 C A FGFBP1 Missense_Mutation p.E109D 0.46 tolerated(0.53) benign(0.001) TCGA-DD-AAVU-01 4 20597447 20597447 G A SLIT2 Missense_Mutation p.E1104K 0.43 tolerated(0.16) probably_damaging(0.998) TCGA-DD-AAVU-01 4 30921774 30921774 G C PCDH7 Splice_Site p.X1059_splice 0.37 TCGA-DD-AAVU-01 4 40810960 40810960 T C NSUN7 3'UTR 0.46 TCGA-DD-AAVU-01 4 41748001 41748001 T C PHOX2B Silent p.A256A 0.43 TCGA-DD-AAVU-01 4 655977 655977 C T PDE6B Missense_Mutation p.H557Y 0.42 deleterious(0) probably_damaging(0.938) TCGA-DD-AAVU-01 4 68379975 68379976 - T CENPC Frame_Shift_Ins p.Q421Tfs*8 0.28 TCGA-DD-AAVU-01 4 74274521 74274524 AAGT - ALB Splice_Site p.X161_splice 0.42 TCGA-DD-AAVU-01 4 79340185 79340185 A T FRAS1 Missense_Mutation p.Y1503F 0.42 benign(0.224) TCGA-DD-AAVU-01 5 124080294 124080294 A T ZNF608 Missense_Mutation p.I130N 0.60 tolerated(0.49) probably_damaging(0.988) TCGA-DD-AAVU-01 5 140214821 140214821 G A PCDHA7 Missense_Mutation p.V285I 0.47 tolerated_low_confidence(0.27) benign(0.004) TCGA-DD-AAVU-01 5 140554567 140554567 G C PCDHB7 Silent p.A717A 0.43 TCGA-DD-AAVU-01 5 26885790 26885790 C A CDH9 Silent p.L605L 0.46 TCGA-DD-AAVU-01 5 53839038 53839038 C T SNX18 Nonsense_Mutation p.R551* 0.43 TCGA-DD-AAVU-01 6 24412501 24412501 A G MRS2 Missense_Mutation p.N156D 0.49 tolerated(0.24) benign(0.034) TCGA-DD-AAVU-01 6 26217258 26217258 C T HIST1H2AE Missense_Mutation p.S19F 0.42 deleterious_low_confidence(0.01) unknown(0) TCGA-DD-AAVU-01 6 85446717 85446717 A T TBX18 Missense_Mutation p.S504T 0.47 tolerated(0.3) benign(0.001) TCGA-DD-AAVU-01 6 90661177 90661177 G A BACH2 Silent p.T216T 0.41 TCGA-DD-AAVU-01 6 94120371 94120371 A G EPHA7 Missense_Mutation p.L227S 0.42 deleterious(0) probably_damaging(0.998) TCGA-DD-AAVU-01 8 104973332 104973332 A - RIMS2 Frame_Shift_Del p.D914Afs*8 0.43 TCGA-DD-AAVU-01 8 41550170 41550170 A T ANK1 Missense_Mutation p.I1326K 0.12 deleterious(0) possibly_damaging(0.878) TCGA-DD-AAVU-01 9 108126972 108126972 A C SLC44A1 Silent p.A408A 0.93 TCGA-DD-AAVU-01 9 119249699 119249699 C A ASTN2 Missense_Mutation p.V1095F 0.83 deleterious_low_confidence(0.02) unknown(0) TCGA-DD-AAVU-01 9 711611 711611 G A KANK1 Missense_Mutation p.R282Q 0.72 deleterious(0) benign(0.279) TCGA-DD-AAVU-01 9 79118698 79118698 A C GCNT1 3'UTR 0.74 TCGA-DD-AAVU-01 X 134166340 134166340 C A FAM127A 5'UTR 0.98 TCGA-DD-AAVV-01 10 134646996 134646996 A G TTC40 Missense_Mutation p.V2328A 0.10 deleterious(0) benign(0.075) TCGA-DD-AAVV-01 10 29822162 29822162 C T SVIL Silent p.K378K 0.09 TCGA-DD-AAVV-01 10 53822361 53822361 G T PRKG1 Missense_Mutation p.G302V 0.21 deleterious(0) probably_damaging(0.998) TCGA-DD-AAVV-01 10 53822362 53822362 A T PRKG1 Silent p.G302G 0.20 TCGA-DD-AAVV-01 10 5790611 5790616 GAGCTA AGCTG FAM208B Frame_Shift_Del p.E1743Sfs*3 0.15 TCGA-DD-AAVV-01 10 61832655 61832655 C A ANK3 Missense_Mutation p.A2662S 0.05 benign(0.023) TCGA-DD-AAVV-01 10 88220155 88220155 C T WAPAL Splice_Site p.X860_splice 0.06 TCGA-DD-AAVV-01 10 90435976 90435976 C A LIPF Missense_Mutation p.S310Y 0.31 deleterious(0.04) probably_damaging(0.983) TCGA-DD-AAVV-01 11 1092362 1092362 A T MUC2 Missense_Mutation p.K1394M 0.06 possibly_damaging(0.527) TCGA-DD-AAVV-01 11 117310015 117310015 A G DSCAML1 Missense_Mutation p.F1431L 0.12 tolerated(0.7) benign(0.029) TCGA-DD-AAVV-01 11 1265206 1265206 C A MUC5B Missense_Mutation p.P2366T 0.12 unknown(0) TCGA-DD-AAVV-01 11 129801056 129801056 G A PRDM10 Missense_Mutation p.P462L 0.08 tolerated(0.06) probably_damaging(0.999) TCGA-DD-AAVV-01 11 130748193 130748193 A T SNX19 3'UTR 0.33 TCGA-DD-AAVV-01 11 2154351 2154351 G - IGF2 Frame_Shift_Del p.R193Afs*22 0.15 TCGA-DD-AAVV-01 11 22851254 22851254 G T SVIP Missense_Mutation p.P14H 0.19 tolerated(0.17) possibly_damaging(0.824) TCGA-DD-AAVV-01 11 32449500 32449500 A G WT1 Splice_Site p.X291_splice 0.08 TCGA-DD-AAVV-01 11 5020271 5020271 C T OR51L1 Missense_Mutation p.P20L 0.09 deleterious(0.01) benign(0.299) TCGA-DD-AAVV-01 11 55944169 55944169 G T OR5J2 Missense_Mutation p.V26L 0.15 tolerated(0.66) benign(0.003) TCGA-DD-AAVV-01 11 56086057 56086057 T G OR8K3 Missense_Mutation p.I92S 0.05 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-DD-AAVV-01 11 60068517 60068517 C G MS4A4A Missense_Mutation p.T125S 0.30 deleterious(0.05) benign(0.378) TCGA-DD-AAVV-01 11 60563034 60563034 A C MS4A10 Missense_Mutation p.I167L 0.15 tolerated(0.16) benign(0.31) TCGA-DD-AAVV-01 11 64888473 64888473 C - FAU Frame_Shift_Del p.V86* 0.11 TCGA-DD-AAVV-01 11 6806278 6806278 T C OR2AG1 Missense_Mutation p.W4R 0.11 tolerated(0.21) benign(0.005) TCGA-DD-AAVV-01 11 77991812 77991812 C T GAB2 Missense_Mutation p.A71T 0.13 deleterious(0.03) benign(0.259) TCGA-DD-AAVV-01 12 10955114 10955114 A T TAS2R7 Missense_Mutation p.V19E 0.14 deleterious(0) possibly_damaging(0.69) TCGA-DD-AAVV-01 12 111345215 111345215 G A CCDC63 Missense_Mutation p.V543M 0.07 tolerated_low_confidence(0.24) benign(0.003) TCGA-DD-AAVV-01 12 114793594 114793594 G T TBX5 Missense_Mutation p.P434T 0.06 tolerated(0.37) possibly_damaging(0.543) TCGA-DD-AAVV-01 12 25055017 25055017 C A BCAT1 Intron 0.38 TCGA-DD-AAVV-01 12 40115156 40115156 G A C12orf40 3'UTR 0.20 TCGA-DD-AAVV-01 12 52845360 52845360 T C KRT6B Missense_Mutation p.K168R 0.05 deleterious(0) probably_damaging(0.99) TCGA-DD-AAVV-01 12 56110774 56110774 A G BLOC1S1 Missense_Mutation p.D68G 0.04 deleterious(0.02) benign(0.376) TCGA-DD-AAVV-01 12 6692560 6692560 G A CHD4 Intron 0.17 TCGA-DD-AAVV-01 12 6787319 6787319 G T ZNF384 Missense_Mutation p.D220E 0.30 tolerated(0.94) benign(0.029) TCGA-DD-AAVV-01 12 94697637 94697637 T G PLXNC1 Missense_Mutation p.S1498A 0.08 tolerated(0.31) benign(0.032) TCGA-DD-AAVV-01 13 29041086 29041086 A G FLT1 Silent p.T114T 0.09 TCGA-DD-AAVV-01 13 49649455 49649455 G A FNDC3A Missense_Mutation p.A44T 0.05 tolerated(1) benign(0.007) TCGA-DD-AAVV-01 13 73590121 73590121 A C PIBF1 3'UTR 0.12 TCGA-DD-AAVV-01 14 20403852 20403852 G A OR4K1 Silent p.V9V 0.40 TCGA-DD-AAVV-01 14 29236891 29236891 G T FOXG1 Nonsense_Mutation p.E136* 0.10 TCGA-DD-AAVV-01 14 77919642 77919642 T - VIPAS39 Frame_Shift_Del p.S66Vfs*23 0.28 TCGA-DD-AAVV-01 15 27018789 27018789 C A GABRB3 5'Flank 0.22 TCGA-DD-AAVV-01 15 40005705 40005705 G C FSIP1 Silent p.R376R 0.29 TCGA-DD-AAVV-01 15 63970130 63970130 A G HERC1 Silent p.T2328T 0.07 TCGA-DD-AAVV-01 15 65694784 65694784 A G IGDCC4 Missense_Mutation p.V202A 0.13 deleterious(0.03) possibly_damaging(0.626) TCGA-DD-AAVV-01 16 3017810 3017810 G C KREMEN2 Splice_Site p.X393_splice 0.05 TCGA-DD-AAVV-01 16 75564992 75564992 G A CHST5 5'UTR 0.09 TCGA-DD-AAVV-01 17 32646478 32646478 A G CCL8 5'UTR 0.38 TCGA-DD-AAVV-01 17 36486669 36486669 A T GPR179 Missense_Mutation p.L928Q 0.20 deleterious(0.04) possibly_damaging(0.901) TCGA-DD-AAVV-01 17 36714600 36714600 G T SRCIN1 Silent p.R688R 0.07 TCGA-DD-AAVV-01 17 53077199 53077199 G T STXBP4 Missense_Mutation p.C165F 0.20 tolerated(0.78) benign(0) TCGA-DD-AAVV-01 17 74084172 74084172 T C EXOC7 Missense_Mutation p.K495R 0.30 deleterious(0.01) probably_damaging(0.934) TCGA-DD-AAVV-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.42 deleterious(0) probably_damaging(0.997) TCGA-DD-AAVV-01 17 80038728 80038728 C A FASN Silent p.L2222L 0.08 TCGA-DD-AAVV-01 17 8383477 8383477 G A MYH10 Silent p.L1850L 0.10 TCGA-DD-AAVV-01 18 59483459 59483459 C T RNF152 Missense_Mutation p.A80T 0.06 tolerated(0.59) benign(0.002) TCGA-DD-AAVV-01 19 32930029 32930029 C T DPY19L3 Missense_Mutation p.T203I 0.20 deleterious(0) probably_damaging(1) TCGA-DD-AAVV-01 19 3531921 3531921 G A FZR1 Nonsense_Mutation p.W279* 0.08 TCGA-DD-AAVV-01 19 38960049 38960049 G T RYR1 Missense_Mutation p.G1221C 0.36 probably_damaging(0.998) TCGA-DD-AAVV-01 19 41858864 41858864 C T TGFB1 Missense_Mutation p.G29E 0.28 deleterious(0.04) possibly_damaging(0.576) TCGA-DD-AAVV-01 19 42596037 42596037 G T POU2F2 Intron 0.29 TCGA-DD-AAVV-01 19 46417989 46417989 C T NANOS2 5'UTR 0.18 TCGA-DD-AAVV-01 19 48185376 48185376 C G GLTSCR1 Silent p.P750P 0.17 TCGA-DD-AAVV-01 19 50397537 50397537 C A IL4I1 Missense_Mutation p.M207I 0.27 tolerated(0.17) possibly_damaging(0.628) TCGA-DD-AAVV-01 19 51466671 51466671 C A KLK6 Missense_Mutation p.R111L 0.20 deleterious(0) possibly_damaging(0.528) TCGA-DD-AAVV-01 19 52618477 52618477 T C ZNF616 Missense_Mutation p.H647R 0.10 tolerated(0.38) benign(0.089) TCGA-DD-AAVV-01 19 5687964 5687964 G C HSD11B1L Missense_Mutation p.G236R 0.07 deleterious(0) benign(0.016) TCGA-DD-AAVV-01 19 5778649 5778649 C T CATSPERD Missense_Mutation p.R787C 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.649) TCGA-DD-AAVV-01 19 6755043 6755043 G A SH2D3A Silent p.A260A 0.29 TCGA-DD-AAVV-01 19 9067090 9067090 C A MUC16 Nonsense_Mutation p.E6786* 0.04 TCGA-DD-AAVV-01 1 103491357 103491357 T A COL11A1 Intron 0.28 TCGA-DD-AAVV-01 1 120057095 120057095 C T HSD3B1 Missense_Mutation p.R317C 0.24 tolerated(0.06) benign(0.081) TCGA-DD-AAVV-01 1 150443896 150443896 T G RPRD2 Missense_Mutation p.D824E 0.05 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DD-AAVV-01 1 192153515 192153515 T A RGS18 Missense_Mutation p.V180E 0.14 deleterious(0) probably_damaging(1) TCGA-DD-AAVV-01 1 196876513 196876513 A C CFHR4 Missense_Mutation p.K227N 0.02 tolerated(0.28) possibly_damaging(0.908) TCGA-DD-AAVV-01 1 200827018 200827018 C T CAMSAP2 Missense_Mutation p.T1423I 0.17 deleterious(0) possibly_damaging(0.69) TCGA-DD-AAVV-01 1 202568364 202568364 G A SYT2 Silent p.I345I 0.14 TCGA-DD-AAVV-01 1 205308358 205308358 A G KLHDC8A Missense_Mutation p.F241L 0.20 deleterious(0) possibly_damaging(0.831) TCGA-DD-AAVV-01 1 207891003 207891003 C A CR1L Missense_Mutation p.P537T 0.03 tolerated(0.07) possibly_damaging(0.867) TCGA-DD-AAVV-01 1 223536851 223536851 G T SUSD4 5'UTR 0.16 TCGA-DD-AAVV-01 1 225510413 225510413 T C DNAH14 Missense_Mutation p.V2382A 0.04 deleterious(0) probably_damaging(0.996) TCGA-DD-AAVV-01 1 228444576 228444576 T C OBSCN Missense_Mutation p.Y1604H 0.26 probably_damaging(0.999) TCGA-DD-AAVV-01 1 240071874 240071874 A C CHRM3 Missense_Mutation p.S375R 0.06 tolerated(0.42) benign(0.225) TCGA-DD-AAVV-01 1 245250690 245250690 A T EFCAB2 3'UTR 0.03 TCGA-DD-AAVV-01 1 248367250 248367250 A G OR2M3 Missense_Mutation p.N294S 0.05 deleterious(0.01) possibly_damaging(0.468) TCGA-DD-AAVV-01 1 34401517 34401517 G A CSMD2 Missense_Mutation p.P146S 0.06 tolerated(0.62) benign(0.158) TCGA-DD-AAVV-01 1 52306125 52306125 C G NRD1 Missense_Mutation p.G135R 0.16 tolerated_low_confidence(0.12) benign(0.001) TCGA-DD-AAVV-01 1 85018788 85018788 A G CTBS 3'UTR 0.05 TCGA-DD-AAVV-01 1 85589863 85589863 T C WDR63 Missense_Mutation p.S681P 0.37 deleterious(0) probably_damaging(0.998) TCGA-DD-AAVV-01 1 92944171 92944171 A G GFI1 Missense_Mutation p.M355T 0.05 deleterious(0) probably_damaging(0.989) TCGA-DD-AAVV-01 1 93704961 93704961 A G CCDC18 Missense_Mutation p.M953V 0.04 tolerated(0.52) benign(0.009) TCGA-DD-AAVV-01 1 95363516 95363516 T C CNN3 Missense_Mutation p.M258V 0.21 deleterious(0.03) possibly_damaging(0.759) TCGA-DD-AAVV-01 20 33575452 33575452 G A MYH7B Missense_Mutation p.V456M 0.20 possibly_damaging(0.87) TCGA-DD-AAVV-01 20 42697300 42697300 A T TOX2 Missense_Mutation p.R499W 0.21 deleterious(0) probably_damaging(0.994) TCGA-DD-AAVV-01 20 48809083 48809084 - T CEBPB 3'UTR 0.36 TCGA-DD-AAVV-01 20 57276110 57276110 G T NPEPL1 Missense_Mutation p.A240S 0.04 deleterious(0.04) probably_damaging(0.93) TCGA-DD-AAVV-01 20 58381188 58381188 C G PHACTR3 Missense_Mutation p.P423A 0.04 deleterious(0) probably_damaging(0.976) TCGA-DD-AAVV-01 20 61453479 61453479 C T COL9A3 Missense_Mutation p.P147L 0.18 tolerated(0.11) unknown(0) TCGA-DD-AAVV-01 22 18171844 18171844 G C BCL2L13 Missense_Mutation p.G108R 0.05 deleterious(0) probably_damaging(0.997) TCGA-DD-AAVV-01 22 22782367 22782367 C G IGLV5-37 Missense_Mutation p.A122G 0.17 tolerated(0.09) benign(0.026) TCGA-DD-AAVV-01 22 25144937 25144937 G T PIWIL3 Silent p.T462T 0.10 TCGA-DD-AAVV-01 22 26222449 26222449 G C MYO18B Silent p.V923V 0.17 TCGA-DD-AAVV-01 22 50664306 50664306 T C TUBGCP6 Missense_Mutation p.K634E 0.07 tolerated(0.33) possibly_damaging(0.525) TCGA-DD-AAVV-01 2 11773162 11773162 A G GREB1 Missense_Mutation p.D1655G 0.10 deleterious(0.02) benign(0.396) TCGA-DD-AAVV-01 2 11911691 11911691 A G LPIN1 Missense_Mutation p.K210R 0.14 tolerated(0.29) possibly_damaging(0.686) TCGA-DD-AAVV-01 2 158115035 158115035 A G GALNT5 Silent p.R147R 0.10 TCGA-DD-AAVV-01 2 20647549 20647549 C T RHOB Missense_Mutation p.P108L 0.06 deleterious(0.02) possibly_damaging(0.753) TCGA-DD-AAVV-01 2 209108256 209108256 T G IDH1 Missense_Mutation p.Q198P 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.749) TCGA-DD-AAVV-01 2 218713775 218713775 T A TNS1 Missense_Mutation p.S364C 0.21 deleterious(0) possibly_damaging(0.759) TCGA-DD-AAVV-01 2 219134819 219134819 G T AAMP 5'UTR 0.25 TCGA-DD-AAVV-01 2 227920768 227920768 C A COL4A4 Missense_Mutation p.G870V 0.05 unknown(0) TCGA-DD-AAVV-01 2 239000017 239000017 A G SCLY Intron 0.34 TCGA-DD-AAVV-01 2 31489355 31489355 G A EHD3 Missense_Mutation p.A465T 0.26 tolerated(0.37) benign(0.036) TCGA-DD-AAVV-01 2 37571862 37571862 C G QPCT 5'UTR 0.05 TCGA-DD-AAVV-01 2 38972184 38972184 A G SRSF7 3'UTR 0.41 TCGA-DD-AAVV-01 2 58386628 58386628 A C VRK2 Missense_Mutation p.K443Q 0.10 tolerated_low_confidence(0.38) benign(0.048) TCGA-DD-AAVV-01 2 58386637 58386637 A C VRK2 Silent p.R446R 0.13 TCGA-DD-AAVV-01 2 60688438 60688438 C T BCL11A Missense_Mutation p.G537S 0.24 tolerated(0.22) possibly_damaging(0.855) TCGA-DD-AAVV-01 2 68385547 68385547 A C PNO1 Silent p.P81P 0.26 TCGA-DD-AAVV-01 3 124438224 124438224 A G RP11-71H17.7 5'Flank 0.28 TCGA-DD-AAVV-01 3 1414146 1414146 A T CNTN6 Missense_Mutation p.E552D 0.05 deleterious(0.01) probably_damaging(0.998) TCGA-DD-AAVV-01 3 156396043 156396043 C T TIPARP Missense_Mutation p.P186L 0.04 deleterious_low_confidence(0.01) benign(0.113) TCGA-DD-AAVV-01 3 167196762 167196762 C A WDR49 Missense_Mutation p.E666D 0.20 deleterious(0.02) possibly_damaging(0.884) TCGA-DD-AAVV-01 3 23934424 23934424 A C NKIRAS1 3'UTR 0.24 TCGA-DD-AAVV-01 3 2777928 2777928 A G CNTN4 Missense_Mutation p.I29V 0.18 tolerated(0.58) benign(0.034) TCGA-DD-AAVV-01 3 32612261 32612261 A T DYNC1LI1 Translation_Start_Site p.M1? 0.11 deleterious_low_confidence(0) benign(0.042) TCGA-DD-AAVV-01 3 57445491 57445491 C A DNAH12 Missense_Mutation p.R897L 0.26 tolerated(1) possibly_damaging(0.569) TCGA-DD-AAVV-01 3 58139320 58139320 G A FLNB Missense_Mutation p.V2227M 0.06 deleterious(0.02) probably_damaging(0.918) TCGA-DD-AAVV-01 3 89156944 89156944 C G EPHA3 Missense_Mutation p.L16V 0.12 tolerated(0.14) benign(0.005) TCGA-DD-AAVV-01 3 89478259 89478259 A G EPHA3 Missense_Mutation p.K693R 0.08 tolerated(0.59) probably_damaging(0.987) TCGA-DD-AAVV-01 3 98312013 98312013 C T CPOX Silent p.S112S 0.07 TCGA-DD-AAVV-01 4 126240520 126240520 A C FAT4 Missense_Mutation p.Y985S 0.08 benign(0.006) TCGA-DD-AAVV-01 4 140811502 140811502 T C MAML3 Missense_Mutation p.H363R 0.11 probably_damaging(0.996) TCGA-DD-AAVV-01 4 187201692 187201692 G A F11 Missense_Mutation p.G365S 0.09 tolerated(0.58) benign(0.146) TCGA-DD-AAVV-01 4 70079851 70079851 A G UGT2B11 Missense_Mutation p.V197A 0.05 tolerated(0.55) benign(0.02) TCGA-DD-AAVV-01 4 83861045 83861045 T C LIN54 Silent p.K413K 0.08 TCGA-DD-AAVV-01 5 127610297 127610297 C T FBN2 Missense_Mutation p.C2558Y 0.04 deleterious(0) probably_damaging(1) TCGA-DD-AAVV-01 5 131721047 131721047 G A SLC22A5 Missense_Mutation p.R227H 0.05 deleterious(0) probably_damaging(0.999) TCGA-DD-AAVV-01 5 150400207 150400207 C G GPX3 5'UTR 0.15 TCGA-DD-AAVV-01 5 150920148 150920148 T C FAT2 Missense_Mutation p.N3007D 0.05 probably_damaging(0.999) TCGA-DD-AAVV-01 5 153144134 153144134 A G GRIA1 Missense_Mutation p.K665R 0.09 tolerated(0.11) probably_damaging(0.999) TCGA-DD-AAVV-01 5 161524819 161524819 G T GABRG2 Missense_Mutation p.R168M 0.27 deleterious(0) benign(0.168) TCGA-DD-AAVV-01 5 171766310 171766310 T G SH3PXD2B Missense_Mutation p.H600P 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-DD-AAVV-01 5 36629633 36629633 T C SLC1A3 Missense_Mutation p.L88P 0.30 deleterious(0) probably_damaging(0.991) TCGA-DD-AAVV-01 5 36976040 36976040 T C NIPBL Missense_Mutation p.M344T 0.28 deleterious_low_confidence(0) benign(0.017) TCGA-DD-AAVV-01 5 38435262 38435262 C T EGFLAM Silent p.C730C 0.30 TCGA-DD-AAVV-01 5 443218 443218 C A C5orf55 5'UTR 0.18 TCGA-DD-AAVV-01 5 74880726 74880726 G T POLK Missense_Mutation p.G401C 0.23 deleterious(0) probably_damaging(1) TCGA-DD-AAVV-01 5 80608473 80608473 A C ZCCHC9 Missense_Mutation p.N270H 0.03 tolerated(0.29) possibly_damaging(0.902) TCGA-DD-AAVV-01 5 94204080 94204080 G T MCTP1 Nonsense_Mutation p.C798* 0.19 TCGA-DD-AAVV-01 5 94204081 94204081 C T MCTP1 Missense_Mutation p.C798Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-DD-AAVV-01 6 100062629 100062629 C A PRDM13 Missense_Mutation p.D706E 0.04 tolerated_low_confidence(0.07) benign(0.171) TCGA-DD-AAVV-01 6 111587870 111587870 A G KIAA1919 Missense_Mutation p.I369V 0.25 tolerated(0.08) benign(0.015) TCGA-DD-AAVV-01 6 130475974 130475974 T C SAMD3 Missense_Mutation p.Y340C 0.06 tolerated(0.09) possibly_damaging(0.759) TCGA-DD-AAVV-01 6 134210652 134210652 G A TCF21 Silent p.E39E 0.20 TCGA-DD-AAVV-01 6 138584163 138584163 A T KIAA1244 Missense_Mutation p.T515S 0.06 tolerated(0.13) probably_damaging(0.995) TCGA-DD-AAVV-01 6 159646690 159646690 T C FNDC1 Silent p.R336R 0.08 TCGA-DD-AAVV-01 6 170156445 170156445 A G ERMARD Silent p.E109E 0.11 TCGA-DD-AAVV-01 6 31839271 31839271 G A SLC44A4 Silent p.T199T 0.05 TCGA-DD-AAVV-01 6 73331984 73331986 GCG - KCNQ5 In_Frame_Del p.A27del 0.31 TCGA-DD-AAVV-01 6 93956641 93956641 A T EPHA7 Silent p.L865L 0.04 TCGA-DD-AAVV-01 7 137092695 137092695 G T DGKI Missense_Mutation p.P957Q 0.07 tolerated(0.55) possibly_damaging(0.68) TCGA-DD-AAVV-01 7 150814237 150814237 C T AGAP3 Missense_Mutation p.T149M 0.17 deleterious(0) probably_damaging(0.965) TCGA-DD-AAVV-01 7 19763945 19763945 G T TMEM196 Intron 0.21 TCGA-DD-AAVV-01 7 44178595 44178595 G A MYL7 Silent p.P151P 0.05 TCGA-DD-AAVV-01 7 94297615 94297615 A T PEG10 3'UTR 0.04 TCGA-DD-AAVV-01 8 117671203 117671203 T G EIF3H Missense_Mutation p.E102D 0.14 tolerated(0.28) possibly_damaging(0.831) TCGA-DD-AAVV-01 8 118540924 118540924 A T MED30 Missense_Mutation p.Y71F 0.06 tolerated(0.54) benign(0.005) TCGA-DD-AAVV-01 8 120885947 120885947 C G DEPTOR 5'Flank 0.05 TCGA-DD-AAVV-01 8 144942098 144942098 T C EPPK1 Missense_Mutation p.H1775R 0.17 benign(0) TCGA-DD-AAVV-01 8 145114666 145114666 G A OPLAH Nonsense_Mutation p.Q67* 0.20 TCGA-DD-AAVV-01 8 145739845 145739845 C T RECQL4 Missense_Mutation p.R562Q 0.38 deleterious(0.04) benign(0.118) TCGA-DD-AAVV-01 8 21998971 21998971 G T REEP4 Missense_Mutation p.L9M 0.22 deleterious(0.03) benign(0.217) TCGA-DD-AAVV-01 8 55533899 55533899 C T RP1 Missense_Mutation p.R125W 0.05 deleterious(0.02) possibly_damaging(0.836) TCGA-DD-AAVV-01 8 62626832 62626832 C T ASPH Silent p.R33R 0.05 TCGA-DD-AAVV-01 8 69021855 69021855 A T PREX2 Missense_Mutation p.D1048V 0.13 tolerated_low_confidence(0.11) benign(0.187) TCGA-DD-AAVV-01 9 107360936 107360936 C A OR13C5 Silent p.G253G 0.25 TCGA-DD-AAVV-01 9 112151605 112151606 GG - PTPN3 Frame_Shift_Del p.L721Afs*90 0.19 TCGA-DD-AAVV-01 9 125377800 125377800 C A OR1Q1 Missense_Mutation p.P262T 0.22 deleterious(0) probably_damaging(0.999) TCGA-DD-AAVV-01 9 135753494 135753494 C G C9orf9 5'Flank 0.06 TCGA-DD-AAVV-01 9 17309099 17309099 A T CNTLN Missense_Mutation p.N397I 0.18 deleterious(0) possibly_damaging(0.452) TCGA-DD-AAVV-01 9 32632416 32632416 T A TAF1L Missense_Mutation p.E1054D 0.21 deleterious(0.01) possibly_damaging(0.65) TCGA-DD-AAVV-01 9 32786501 32786501 T A TMEM215 3'UTR 0.06 TCGA-DD-AAVV-01 9 33676226 33676226 G A PTENP1 RNA 0.09 TCGA-DD-AAVV-01 9 43853600 43853600 G T CNTNAP3B Silent p.V620V 0.11 TCGA-DD-AAVV-01 9 5335462 5335462 A T RLN1 Missense_Mutation p.V116E 0.11 tolerated(0.13) possibly_damaging(0.896) TCGA-DD-AAVV-01 9 90534168 90534168 A C SPATA31C1 Intron 0.05 TCGA-DD-AAVV-01 X 100662799 100662799 T A GLA Silent p.A31A 0.05 TCGA-DD-AAVV-01 X 119759976 119759976 T C C1GALT1C1 3'UTR 0.40 TCGA-DD-AAVV-01 X 130420435 130420435 T G IGSF1 Missense_Mutation p.M25L 0.04 tolerated(1) benign(0) TCGA-DD-AAVV-01 X 144910244 144910244 T G TMEM257 3'UTR 0.13 TCGA-DD-AAVV-01 X 2408075 2408075 C T ZBED1 Missense_Mutation p.G229D 0.09 tolerated(0.62) benign(0.037) TCGA-DD-AAVV-01 X 47041263 47041263 A T RBM10 Missense_Mutation p.Y564F 0.09 tolerated(0.05) benign(0.137) TCGA-DD-AAVV-01 X 50659241 50659241 T C BMP15 Silent p.G271G 0.49 TCGA-DD-AAVV-01 X 55054235 55054235 T C ALAS2 Intron 0.26 TCGA-DD-AAVV-01 X 591334 591334 A T SHOX 5'UTR 0.11 TCGA-DD-AAVV-01 X 78011865 78011865 T C LPAR4 3'UTR 0.05 TCGA-DD-AAVV-01 X 91137937 91137937 G A PCDH11X Intron 0.59 TCGA-DD-AAVW-01 10 105203771 105203771 G T PDCD11 Missense_Mutation p.A1742S 0.31 tolerated(0.05) benign(0.045) TCGA-DD-AAVW-01 10 129914055 129914055 A G MKI67 Missense_Mutation p.I206T 0.19 tolerated(0.41) benign(0.177) TCGA-DD-AAVW-01 10 25887911 25887911 A C GPR158 Missense_Mutation p.E1119A 0.42 deleterious(0.01) benign(0.103) TCGA-DD-AAVW-01 10 49982595 49982595 G T WDFY4 Missense_Mutation p.L882F 0.35 deleterious(0) possibly_damaging(0.466) TCGA-DD-AAVW-01 10 75434061 75434061 C A AGAP5 3'UTR 0.17 TCGA-DD-AAVW-01 11 61277553 61277553 C G LRRC10B 3'UTR 0.21 TCGA-DD-AAVW-01 11 64518935 64518935 C T PYGM Missense_Mutation p.A611T 0.31 deleterious(0) probably_damaging(1) TCGA-DD-AAVW-01 12 111772269 111772269 C T CUX2 Missense_Mutation p.S984L 0.14 deleterious(0.02) possibly_damaging(0.616) TCGA-DD-AAVW-01 12 2800310 2800310 G T CACNA1C Missense_Mutation p.G2169V 0.29 tolerated_low_confidence(0.24) benign(0.002) TCGA-DD-AAVW-01 12 57113526 57113526 C T NACA Silent p.G596G 0.21 TCGA-DD-AAVW-01 12 6943151 6943151 C T LEPREL2 Missense_Mutation p.R465W 0.26 deleterious(0) probably_damaging(1) TCGA-DD-AAVW-01 13 46287798 46287798 G A SPERT Missense_Mutation p.R213Q 0.23 tolerated(0.69) benign(0.022) TCGA-DD-AAVW-01 15 65153739 65153739 C T AC069368.3 Nonsense_Mutation p.R150* 0.08 TCGA-DD-AAVW-01 16 717526 717526 C T WDR90 Silent p.S1728S 0.43 TCGA-DD-AAVW-01 17 33513464 33513464 C G UNC45B Missense_Mutation p.I894M 0.22 deleterious(0) probably_damaging(0.99) TCGA-DD-AAVW-01 17 76219871 76219871 C T AC087645.1 Silent p.K137K 0.25 TCGA-DD-AAVW-01 17 78796082 78796082 G A RPTOR Silent p.A324A 0.28 TCGA-DD-AAVW-01 18 64211432 64211432 G T CDH19 Nonsense_Mutation p.Y330* 0.18 TCGA-DD-AAVW-01 19 12880808 12880808 C - HOOK2 Frame_Shift_Del p.V331Cfs*51 0.19 TCGA-DD-AAVW-01 19 22235373 22235373 T C ZNF257 5'UTR 0.14 TCGA-DD-AAVW-01 19 38976748 38976748 C T RYR1 Missense_Mutation p.A1818V 0.12 probably_damaging(0.937) TCGA-DD-AAVW-01 19 59058830 59058830 A T TRIM28 Missense_Mutation p.D225V 0.17 deleterious(0) probably_damaging(0.999) TCGA-DD-AAVW-01 19 6713207 6713207 C T C3 Silent p.L332L 0.27 TCGA-DD-AAVW-01 1 145537466 145537466 G C ITGA10 Missense_Mutation p.V826L 0.07 tolerated(0.05) benign(0.077) TCGA-DD-AAVW-01 1 159923926 159923926 A G SLAMF9 Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-DD-AAVW-01 1 235916519 235916519 G A LYST Missense_Mutation p.P2429S 0.25 deleterious(0) probably_damaging(0.993) TCGA-DD-AAVW-01 21 27369713 27369713 T C APP Missense_Mutation p.K351R 0.17 tolerated(0.46) benign(0.027) TCGA-DD-AAVW-01 21 47647474 47647475 - T LSS Frame_Shift_Ins p.L104Hfs*35 0.21 TCGA-DD-AAVW-01 2 107460334 107460334 T G ST6GAL2 Missense_Mutation p.N34H 0.31 possibly_damaging(0.717) TCGA-DD-AAVW-01 2 197672293 197672293 T A C2orf66 Silent p.T76T 0.17 TCGA-DD-AAVW-01 2 231675035 231675035 A G CAB39 Missense_Mutation p.R209G 0.03 tolerated(0.24) benign(0.01) TCGA-DD-AAVW-01 2 38604337 38604337 C T ATL2 Silent p.R22R 0.09 TCGA-DD-AAVW-01 3 111940054 111940054 A G SLC9C1 Missense_Mutation p.Y531H 0.17 deleterious(0) probably_damaging(0.976) TCGA-DD-AAVW-01 3 128986867 128986867 A G COPG1 Silent p.A544A 0.33 TCGA-DD-AAVW-01 3 9989661 9989661 C T PRRT3 Missense_Mutation p.R399H 0.24 deleterious(0.01) probably_damaging(0.958) TCGA-DD-AAVW-01 4 156643335 156643335 C A GUCY1A3 Missense_Mutation p.T621K 0.33 deleterious(0) probably_damaging(0.998) TCGA-DD-AAVW-01 4 36345214 36345214 G A DTHD1 Missense_Mutation p.R705H 0.05 tolerated(0.13) benign(0.015) TCGA-DD-AAVW-01 4 55156540 55156540 C T PDGFRA Missense_Mutation p.R981C 0.11 tolerated(0.2) benign(0.022) TCGA-DD-AAVW-01 4 6611736 6611736 C T MAN2B2 Missense_Mutation p.R740W 0.27 deleterious(0) probably_damaging(0.932) TCGA-DD-AAVW-01 5 140741078 140741078 T C PCDHGB2 Missense_Mutation p.V459A 0.20 tolerated(0.43) benign(0.116) TCGA-DD-AAVW-01 5 140755848 140755848 C T PCDHGA6 Missense_Mutation p.A733V 0.25 tolerated_low_confidence(0.24) benign(0.004) TCGA-DD-AAVW-01 5 150031090 150031090 T C SYNPO 3'UTR 0.09 TCGA-DD-AAVW-01 6 29080267 29080267 G T OR2J3 Silent p.L200L 0.26 TCGA-DD-AAVW-01 6 30121906 30121906 C T TRIM10 Missense_Mutation p.R429Q 0.17 tolerated(0.14) benign(0.025) TCGA-DD-AAVW-01 6 66042220 66042220 T A EYS Intron 0.20 TCGA-DD-AAVW-01 7 20824044 20824046 GCC - SP8 In_Frame_Del p.G464del 0.11 TCGA-DD-AAVW-01 7 20824957 20824959 CCG - SP8 In_Frame_Del p.G165del 0.07 TCGA-DD-AAVW-01 7 77326048 77326048 T G RSBN1L Missense_Mutation p.F88V 0.33 deleterious_low_confidence(0.05) possibly_damaging(0.504) TCGA-DD-AAVW-01 8 124084978 124084978 C A TBC1D31 5'UTR 0.44 TCGA-DD-AAVW-01 8 93003968 93003968 G A RUNX1T1 Missense_Mutation p.P308L 0.36 tolerated(0.51) benign(0.048) TCGA-DD-AAVW-01 8 98289975 98289975 G A TSPYL5 Missense_Mutation p.P33L 0.16 tolerated(0.14) unknown(0) TCGA-DD-AAVX-01 10 129903317 129903317 C A MKI67 Missense_Mutation p.G2263W 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AAVX-01 10 27454042 27454042 A G MASTL Silent p.R201R 0.27 TCGA-DD-AAVX-01 10 49381113 49381113 T A FRMPD2 Missense_Mutation p.R1033S 0.12 deleterious(0) probably_damaging(0.962) TCGA-DD-AAVX-01 10 84745207 84745207 G T NRG3 Missense_Mutation p.R646L 0.39 deleterious_low_confidence(0) probably_damaging(0.918) TCGA-DD-AAVX-01 10 96162647 96162647 G A TBC1D12 Missense_Mutation p.G93S 0.31 tolerated_low_confidence(0.14) benign(0.002) TCGA-DD-AAVX-01 10 96826978 96826978 C G CYP2C8 Missense_Mutation p.L156F 0.24 tolerated(0.15) possibly_damaging(0.547) TCGA-DD-AAVX-01 10 99509255 99509255 A T ZFYVE27 Silent p.T192T 0.44 TCGA-DD-AAVX-01 11 111228301 111228301 C T POU2AF1 Missense_Mutation p.V109M 0.34 tolerated(0.28) benign(0.111) TCGA-DD-AAVX-01 11 111859740 111859740 G T DIXDC1 Silent p.L357L 0.45 TCGA-DD-AAVX-01 11 118067460 118067460 T C AMICA1 Missense_Mutation p.Y361C 0.30 deleterious(0) probably_damaging(0.999) TCGA-DD-AAVX-01 11 124489377 124489377 G A PANX3 Missense_Mutation p.C242Y 0.31 deleterious(0) probably_damaging(0.998) TCGA-DD-AAVX-01 11 57137488 57137488 C T P2RX3 3'UTR 0.27 TCGA-DD-AAVX-01 11 62678632 62678632 C T CHRM1 5'UTR 0.41 TCGA-DD-AAVX-01 11 65715207 65715207 G C TSGA10IP RNA 0.27 TCGA-DD-AAVX-01 12 133682814 133682814 T G ZNF140 Silent p.T317T 0.32 TCGA-DD-AAVX-01 12 31586180 31586180 C T DENND5B Missense_Mutation p.R672H 0.26 deleterious(0.03) probably_damaging(0.915) TCGA-DD-AAVX-01 12 5024724 5024724 G A KCNA1 3'UTR 0.24 TCGA-DD-AAVX-01 12 52681031 52681031 G A KRT81 Silent p.L368L 0.43 TCGA-DD-AAVX-01 12 54576561 54576561 C T SMUG1 Intron 0.33 TCGA-DD-AAVX-01 12 6574035 6574035 A G VAMP1 Intron 0.22 TCGA-DD-AAVX-01 12 75672586 75672586 T C CAPS2 Intron 0.29 TCGA-DD-AAVX-01 12 96076579 96076579 A G NTN4 Missense_Mutation p.Y472H 0.34 tolerated(0.5) benign(0.001) TCGA-DD-AAVX-01 12 96076580 96076580 C G NTN4 Missense_Mutation p.W471C 0.34 tolerated(0.11) possibly_damaging(0.497) TCGA-DD-AAVX-01 12 97133759 97133759 A T C12orf55 Missense_Mutation p.T2331S 0.47 deleterious(0) benign(0.003) TCGA-DD-AAVX-01 13 46541986 46541986 C A ZC3H13 Missense_Mutation p.R1325L 0.42 unknown(0) TCGA-DD-AAVX-01 13 84453488 84453488 G T SLITRK1 3'UTR 0.35 TCGA-DD-AAVX-01 14 102285330 102285330 G A PPP2R5C Missense_Mutation p.G32E 0.23 tolerated(0.89) unknown(0) TCGA-DD-AAVX-01 14 105359964 105359964 C T CEP170B Silent p.D1381D 0.10 TCGA-DD-AAVX-01 14 75248349 75248357 CCTCCAGTG - YLPM1 In_Frame_Del p.P535_V537del 0.23 TCGA-DD-AAVX-01 14 77900204 77900204 T C VIPAS39 Missense_Mutation p.D387G 0.29 deleterious(0) probably_damaging(0.994) TCGA-DD-AAVX-01 14 77900210 77900210 T G VIPAS39 Missense_Mutation p.D385A 0.30 deleterious(0.01) possibly_damaging(0.904) TCGA-DD-AAVX-01 15 48431227 48431227 C T SLC24A5 Silent p.S311S 0.31 TCGA-DD-AAVX-01 15 54542554 54542554 C T UNC13C Silent p.G1120G 0.27 TCGA-DD-AAVX-01 16 30536644 30536644 C T ZNF768 Missense_Mutation p.G273S 0.45 tolerated_low_confidence(0.81) benign(0.264) TCGA-DD-AAVX-01 17 1968927 1968927 G T SMG6 Missense_Mutation p.H1294Q 0.08 tolerated(0.26) benign(0.016) TCGA-DD-AAVX-01 17 4016072 4016072 C T ZZEF1 Silent p.R299R 0.31 TCGA-DD-AAVX-01 17 47696738 47696738 T A SPOP Silent p.R70R 0.31 TCGA-DD-AAVX-01 17 74465835 74465835 G A AANAT Missense_Mutation p.G181D 0.27 deleterious(0) probably_damaging(1) TCGA-DD-AAVX-01 17 79213144 79213144 G A C17orf89 5'UTR 0.35 TCGA-DD-AAVX-01 19 36291013 36291013 C T PRODH2 Missense_Mutation p.R513H 0.07 deleterious(0.02) probably_damaging(0.994) TCGA-DD-AAVX-01 19 46000221 46000229 GCCGCCGCC - RTN2 5'UTR 0.33 TCGA-DD-AAVX-01 19 51630327 51630327 A G SIGLEC9 Silent p.P263P 0.34 TCGA-DD-AAVX-01 19 53058362 53058362 T A ZNF808 Silent p.G731G 0.28 TCGA-DD-AAVX-01 19 54312856 54312856 G T NLRP12 Missense_Mutation p.T686K 0.06 tolerated(0.92) benign(0.137) TCGA-DD-AAVX-01 1 118166907 118166907 A G FAM46C 3'UTR 0.43 TCGA-DD-AAVX-01 1 155291207 155291207 G C RUSC1 Intron 0.35 TCGA-DD-AAVX-01 1 179632575 179632575 A G TDRD5 Silent p.P866P 0.31 TCGA-DD-AAVX-01 1 190250879 190250879 C T BRINP3 Missense_Mutation p.E80K 0.37 deleterious(0) probably_damaging(0.988) TCGA-DD-AAVX-01 1 214816385 214816385 G T CENPF Missense_Mutation p.E1568D 0.27 benign(0.024) TCGA-DD-AAVX-01 1 228537683 228537683 G T OBSCN Missense_Mutation p.D7038Y 0.36 probably_damaging(0.998) TCGA-DD-AAVX-01 1 245912933 245912933 C T SMYD3 Missense_Mutation p.E407K 0.26 tolerated(0.09) benign(0.006) TCGA-DD-AAVX-01 1 247071004 247071004 T C AHCTF1 Missense_Mutation p.M214V 0.26 tolerated(0.07) benign(0.038) TCGA-DD-AAVX-01 1 248112399 248112399 G A OR2L8 Missense_Mutation p.M80I 0.40 deleterious(0.05) benign(0.209) TCGA-DD-AAVX-01 1 27106462 27106462 A G ARID1A Missense_Mutation p.K2025E 0.67 possibly_damaging(0.866) TCGA-DD-AAVX-01 1 27106484 27106484 A - ARID1A Frame_Shift_Del p.K2033Rfs*9 0.38 TCGA-DD-AAVX-01 1 32540608 32540608 G T TMEM39B Nonsense_Mutation p.G21* 0.63 TCGA-DD-AAVX-01 1 34238304 34238304 C T CSMD2 Missense_Mutation p.R531Q 0.78 tolerated(0.33) benign(0.015) TCGA-DD-AAVX-01 1 65310503 65310503 T A JAK1 Missense_Mutation p.S729C 0.74 deleterious(0.02) possibly_damaging(0.708) TCGA-DD-AAVX-01 1 75602886 75602886 T A LHX8 Silent p.P69P 0.46 TCGA-DD-AAVX-01 1 79129611 79129611 T C IFI44 3'UTR 0.20 TCGA-DD-AAVX-01 20 45354676 45354676 A G SLC2A10 Missense_Mutation p.N334S 0.28 tolerated(0.16) benign(0.123) TCGA-DD-AAVX-01 20 46265302 46265302 G T NCOA3 Missense_Mutation p.Q724H 0.30 deleterious(0) probably_damaging(0.928) TCGA-DD-AAVX-01 20 46265303 46265303 G T NCOA3 Nonsense_Mutation p.E725* 0.30 TCGA-DD-AAVX-01 21 30445949 30445949 A G CCT8 5'UTR 0.19 TCGA-DD-AAVX-01 21 32490806 32490806 T C TIAM1 3'UTR 0.32 TCGA-DD-AAVX-01 21 47602765 47602765 T G SPATC1L 5'UTR 0.30 TCGA-DD-AAVX-01 22 19707954 19707954 C T SEPT5 Silent p.Y158Y 0.30 TCGA-DD-AAVX-01 22 22842882 22842882 G A ZNF280B Missense_Mutation p.P281L 0.48 tolerated(1) benign(0) TCGA-DD-AAVX-01 22 41253173 41253173 G T XPNPEP3 5'UTR 0.26 TCGA-DD-AAVX-01 22 43870642 43870642 G C MPPED1 Missense_Mutation p.V145L 0.46 deleterious(0) probably_damaging(0.983) TCGA-DD-AAVX-01 2 102477449 102477449 G T MAP4K4 Splice_Site p.X622_splice 0.25 TCGA-DD-AAVX-01 2 130739265 130739265 C T RAB6C 3'UTR 0.34 TCGA-DD-AAVX-01 2 153526802 153526802 C A PRPF40A Nonsense_Mutation p.E525* 0.33 TCGA-DD-AAVX-01 2 165381556 165381556 T A GRB14 Silent p.A212A 0.30 TCGA-DD-AAVX-01 2 189859318 189859318 C T COL3A1 Missense_Mutation p.R449C 0.35 unknown(0) TCGA-DD-AAVX-01 2 191548503 191548503 T C NAB1 Missense_Mutation p.F349L 0.29 tolerated(0.71) benign(0.011) TCGA-DD-AAVX-01 2 31010218 31010218 C T CAPN13 5'UTR 0.37 TCGA-DD-AAVX-01 2 74709806 74709806 C T CCDC142 Silent p.G53G 0.36 TCGA-DD-AAVX-01 3 112255315 112255315 T C ATG3 Intron 0.27 TCGA-DD-AAVX-01 3 185797732 185797732 G A ETV5 Missense_Mutation p.A175V 0.35 tolerated(0.24) benign(0.003) TCGA-DD-AAVX-01 3 190026015 190026015 A G CLDN1 3'UTR 0.33 TCGA-DD-AAVX-01 3 41266101 41266101 C G CTNNB1 Missense_Mutation p.S33C 0.41 deleterious(0) probably_damaging(0.987) TCGA-DD-AAVX-01 3 46722032 46722032 C A ALS2CL Splice_Site p.X479_splice 0.27 TCGA-DD-AAVX-01 3 56627035 56627035 A C CCDC66 Missense_Mutation p.K325T 0.36 deleterious(0) possibly_damaging(0.56) TCGA-DD-AAVX-01 4 145035877 145035877 T A GYPA Missense_Mutation p.D134V 0.42 deleterious(0.01) possibly_damaging(0.572) TCGA-DD-AAVX-01 4 15688426 15688426 A C FAM200B 5'UTR 0.39 TCGA-DD-AAVX-01 4 159568206 159568206 A G RXFP1 Missense_Mutation p.I537V 0.45 tolerated(0.32) benign(0.005) TCGA-DD-AAVX-01 4 25676185 25676185 C G SLC34A2 Silent p.G464G 0.41 TCGA-DD-AAVX-01 4 41750825 41750825 A G PHOX2B 5'UTR 0.56 TCGA-DD-AAVX-01 5 123980027 123980027 A T ZNF608 Missense_Mutation p.Y1345N 0.22 deleterious(0) probably_damaging(0.998) TCGA-DD-AAVX-01 5 123980028 123980028 C A ZNF608 Missense_Mutation p.Q1344H 0.21 tolerated(0.06) probably_damaging(0.996) TCGA-DD-AAVX-01 5 140750610 140750610 G A PCDHGB3 Missense_Mutation p.G217R 0.22 deleterious(0.01) probably_damaging(0.936) TCGA-DD-AAVX-01 5 169694121 169694121 C A LCP2 Intron 0.24 TCGA-DD-AAVX-01 5 23522916 23522916 G T PRDM9 Silent p.P268P 0.34 TCGA-DD-AAVX-01 5 86565059 86565059 T C RASA1 Intron 0.24 TCGA-DD-AAVX-01 6 109786867 109786867 C T ZBTB24 3'UTR 0.62 TCGA-DD-AAVX-01 6 117589350 117589350 A C VGLL2 Silent p.L29L 0.34 TCGA-DD-AAVX-01 6 122749064 122749064 T C HSF2 Missense_Mutation p.V398A 0.35 tolerated(0.1) probably_damaging(0.926) TCGA-DD-AAVX-01 6 24429303 24429303 C T GPLD1 Missense_Mutation p.R827Q 0.18 deleterious(0.02) possibly_damaging(0.774) TCGA-DD-AAVX-01 6 27101233 27101233 A T HIST1H2AG Missense_Mutation p.K128M 0.32 deleterious_low_confidence(0) benign(0.344) TCGA-DD-AAVX-01 6 30656498 30656498 C A NRM Silent p.R243R 0.25 TCGA-DD-AAVX-01 6 32036842 32036842 A G TNXB Silent p.L1887L 0.36 TCGA-DD-AAVX-01 6 36359627 36359627 C T PXT1 Missense_Mutation p.A109T 0.20 tolerated_low_confidence(0.12) benign(0.005) TCGA-DD-AAVX-01 6 49814359 49814359 C T CRISP1 Missense_Mutation p.M103I 0.37 tolerated(0.32) benign(0.005) TCGA-DD-AAVX-01 6 89856211 89856211 G A PM20D2 Silent p.A116A 0.33 TCGA-DD-AAVX-01 7 100731596 100731596 C T TRIM56 Silent p.L335L 0.24 TCGA-DD-AAVX-01 7 101256658 101256658 G A MYL10 3'UTR 0.43 TCGA-DD-AAVX-01 7 1474102 1474102 C G MICALL2 3'UTR 0.43 TCGA-DD-AAVX-01 7 45931536 45931536 C G IGFBP1 Silent p.P175P 0.40 TCGA-DD-AAVX-01 8 145666384 145666384 C G TONSL Missense_Mutation p.D326H 0.43 tolerated(0.15) benign(0.172) TCGA-DD-AAVX-01 8 94935709 94935709 G A PDP1 Silent p.E499E 0.58 TCGA-DD-AAVX-01 9 139395113 139395113 T A NOTCH1 Missense_Mutation p.D1942V 0.21 deleterious(0) possibly_damaging(0.802) TCGA-DD-AAVX-01 9 32431729 32431729 A G ACO1 Missense_Mutation p.K580R 0.47 deleterious(0.02) benign(0.001) TCGA-DD-AAVX-01 X 153171432 153171432 C T AVPR2 Missense_Mutation p.R158W 0.73 tolerated(0.12) probably_damaging(0.932) TCGA-DD-AAVX-01 X 153691734 153691734 G T PLXNA3 Missense_Mutation p.V440L 0.67 deleterious(0.02) benign(0.389) TCGA-DD-AAVX-01 X 54321102 54321102 A G WNK3 Missense_Mutation p.L526S 0.60 tolerated(0.1) benign(0.01) TCGA-DD-AAVY-01 10 15255031 15255031 C A FAM171A1 Missense_Mutation p.Q852H 0.63 tolerated(0.66) benign(0.001) TCGA-DD-AAVY-01 10 82277760 82277760 G T TSPAN14 3'UTR 0.44 TCGA-DD-AAVY-01 10 95351737 95351737 G A RBP4 3'UTR 0.20 TCGA-DD-AAVY-01 10 97772324 97772324 G C CC2D2B Missense_Mutation p.Q52H 0.41 deleterious(0.04) benign(0.006) TCGA-DD-AAVY-01 10 97919225 97919225 G A ZNF518A RNA 0.45 TCGA-DD-AAVY-01 11 108385423 108385423 T C EXPH5 Missense_Mutation p.I271V 0.44 deleterious(0.04) benign(0.056) TCGA-DD-AAVY-01 11 119025597 119025597 C T ABCG4 Missense_Mutation p.P220S 0.30 deleterious(0.05) benign(0.2) TCGA-DD-AAVY-01 11 17650787 17650787 C A OTOG Silent p.I2224I 0.52 TCGA-DD-AAVY-01 11 17758086 17758086 C A KCNC1 Silent p.L179L 0.43 TCGA-DD-AAVY-01 11 56237301 56237301 G A OR5M3 Nonsense_Mutation p.R225* 0.44 TCGA-DD-AAVY-01 11 60184358 60184358 G T MS4A14 Silent p.L672L 0.49 TCGA-DD-AAVY-01 11 86267694 86267694 C T ME3 Missense_Mutation p.R123Q 0.33 deleterious(0.02) possibly_damaging(0.758) TCGA-DD-AAVY-01 11 92533328 92533328 C T FAT3 Silent p.Y2383Y 0.64 TCGA-DD-AAVY-01 12 116444191 116444191 T C MED13L Missense_Mutation p.D755G 0.46 tolerated(0.2) unknown(0) TCGA-DD-AAVY-01 12 120634712 120634715 GATG - RPLP0 Frame_Shift_Del p.P272Lfs*63 0.35 TCGA-DD-AAVY-01 12 122247901 122247901 G A SETD1B Silent p.S350S 0.58 TCGA-DD-AAVY-01 12 123186897 123186897 A G HCAR2 Missense_Mutation p.C312R 0.25 tolerated(0.24) benign(0.001) TCGA-DD-AAVY-01 12 123200351 123200351 A G HCAR3 Missense_Mutation p.C312R 0.22 tolerated(0.14) benign(0.004) TCGA-DD-AAVY-01 12 14948022 14948022 T A WBP11 Missense_Mutation p.E135V 0.52 deleterious(0.01) unknown(0) TCGA-DD-AAVY-01 12 27933349 27933349 A G KLHL42 Missense_Mutation p.Y29C 0.49 deleterious(0) probably_damaging(0.921) TCGA-DD-AAVY-01 12 6574038 6574038 A G VAMP1 Intron 0.42 TCGA-DD-AAVY-01 12 66731799 66731799 G C HELB Missense_Mutation p.V1061L 0.54 tolerated(0.21) probably_damaging(0.996) TCGA-DD-AAVY-01 12 67705572 67705572 A G CAND1 Missense_Mutation p.T1154A 0.50 tolerated(0.08) benign(0.366) TCGA-DD-AAVY-01 12 93966549 93966549 C A SOCS2 5'UTR 0.61 TCGA-DD-AAVY-01 14 101531693 101531693 C A MIR409 RNA 0.52 TCGA-DD-AAVY-01 14 65008434 65008434 G A HSPA2 Silent p.S289S 0.50 TCGA-DD-AAVY-01 14 74988710 74988710 C A LTBP2 Nonsense_Mutation p.G898* 0.17 TCGA-DD-AAVY-01 14 86089396 86089396 C A FLRT2 Missense_Mutation p.T513N 0.41 tolerated(0.14) benign(0.084) TCGA-DD-AAVY-01 15 28441502 28441502 T A HERC2 Splice_Site p.X2707_splice 0.45 TCGA-DD-AAVY-01 15 40648356 40648356 C T PHGR1 Missense_Mutation p.P34L 0.49 unknown(0) TCGA-DD-AAVY-01 15 42446415 42446415 C T PLA2G4F Missense_Mutation p.V109I 0.14 tolerated(0.58) benign(0.08) TCGA-DD-AAVY-01 16 2855034 2855034 T C PRSS41 RNA 0.50 TCGA-DD-AAVY-01 16 30744975 30744975 C T SRCAP Missense_Mutation p.S2117L 0.40 possibly_damaging(0.864) TCGA-DD-AAVY-01 16 31341476 31341476 C G ITGAM Silent p.A1018A 0.39 TCGA-DD-AAVY-01 16 67579380 67579380 G C FAM65A Missense_Mutation p.V1065L 0.47 tolerated(0.88) benign(0.097) TCGA-DD-AAVY-01 16 68289848 68289848 G A PLA2G15 Missense_Mutation p.A228T 0.43 deleterious(0.02) probably_damaging(0.952) TCGA-DD-AAVY-01 17 34264842 34264842 C A LYZL6 Missense_Mutation p.G73V 0.48 deleterious(0) probably_damaging(0.994) TCGA-DD-AAVY-01 17 34945708 34945708 A G GGNBP2 Missense_Mutation p.N654S 0.33 tolerated_low_confidence(0.17) benign(0.186) TCGA-DD-AAVY-01 17 3664407 3664407 A G ITGAE Silent p.G166G 0.57 TCGA-DD-AAVY-01 17 39036074 39036074 A G KRT20 Silent p.H303H 0.44 TCGA-DD-AAVY-01 17 39593759 39593759 A T KRT38 Missense_Mutation p.C426S 0.43 tolerated(0.2) benign(0.002) TCGA-DD-AAVY-01 17 40575009 40575009 G T PTRF Nonsense_Mutation p.S36* 0.41 TCGA-DD-AAVY-01 17 4080548 4080548 T C ANKFY1 Missense_Mutation p.D925G 0.50 deleterious(0) probably_damaging(0.972) TCGA-DD-AAVY-01 17 79862774 79862774 C A PCYT2 Missense_Mutation p.A387S 0.43 tolerated(0.29) probably_damaging(0.909) TCGA-DD-AAVY-01 17 79862775 79862775 C G PCYT2 Silent p.L386L 0.42 TCGA-DD-AAVY-01 17 80789233 80789233 G T ZNF750 Missense_Mutation p.N366K 0.49 tolerated(0.19) benign(0.173) TCGA-DD-AAVY-01 19 11505045 11505045 G A RGL3 3'UTR 0.52 TCGA-DD-AAVY-01 19 1470354 1470354 G A APC2 3'UTR 0.36 TCGA-DD-AAVY-01 19 17691643 17691643 G T COLGALT1 Silent p.L510L 0.49 TCGA-DD-AAVY-01 19 41631455 41631455 A G CYP2F1 Missense_Mutation p.T404A 0.23 deleterious(0.02) benign(0.021) TCGA-DD-AAVY-01 19 42880311 42880311 A G MEGF8 Missense_Mutation p.Q2574R 0.35 deleterious(0) probably_damaging(0.999) TCGA-DD-AAVY-01 19 45575426 45575426 C A ZNF296 Missense_Mutation p.Q287H 0.49 tolerated(0.11) possibly_damaging(0.556) TCGA-DD-AAVY-01 19 51563812 51563812 G A KLK13 Silent p.G39G 0.06 TCGA-DD-AAVY-01 19 57027696 57027696 A C ZNF471 Missense_Mutation p.Q29P 0.49 deleterious(0.01) benign(0.001) TCGA-DD-AAVY-01 19 58489957 58489957 T C ZNF606 Silent p.A697A 0.46 TCGA-DD-AAVY-01 19 9056223 9056223 C T MUC16 Missense_Mutation p.G10408E 0.38 benign(0.007) TCGA-DD-AAVY-01 1 150676669 150676669 T C HORMAD1 Silent p.E291E 0.27 TCGA-DD-AAVY-01 1 153333425 153333425 C T S100A9 3'UTR 0.48 TCGA-DD-AAVY-01 1 154987493 154987493 A G ZBTB7B Silent p.P153P 0.31 TCGA-DD-AAVY-01 1 1560565 1560565 G C MIB2 Missense_Mutation p.G356R 0.50 deleterious(0) probably_damaging(0.973) TCGA-DD-AAVY-01 1 202097337 202097337 G A GPR37L1 Missense_Mutation p.V367I 0.54 tolerated(0.32) benign(0.054) TCGA-DD-AAVY-01 1 203678666 203678666 C T ATP2B4 Missense_Mutation p.R599C 0.46 deleterious(0) probably_damaging(0.979) TCGA-DD-AAVY-01 1 205764544 205764544 C T SLC41A1 Missense_Mutation p.G379R 0.21 tolerated(0.27) probably_damaging(0.955) TCGA-DD-AAVY-01 1 215914870 215914870 C A USH2A Missense_Mutation p.G3853V 0.28 probably_damaging(1) TCGA-DD-AAVY-01 1 223842099 223842099 C T CAPN8 Silent p.E80E 0.63 TCGA-DD-AAVY-01 1 32133217 32133217 C T COL16A1 Missense_Mutation p.E1106K 0.49 unknown(0) TCGA-DD-AAVY-01 1 33150122 33150122 A G RBBP4 3'UTR 0.36 TCGA-DD-AAVY-01 1 46775949 46775949 G A UQCRH Silent p.T68T 0.48 TCGA-DD-AAVY-01 1 85742039 85742039 G A BCL10 5'UTR 0.49 TCGA-DD-AAVY-01 20 30064277 30064277 A G REM1 Missense_Mutation p.K10R 0.42 tolerated(0.46) benign(0.008) TCGA-DD-AAVY-01 20 44402999 44402999 T C WFDC3 3'UTR 0.53 TCGA-DD-AAVY-01 20 44678266 44678266 A T SLC12A5 Missense_Mutation p.Q696L 0.41 deleterious(0) benign(0.092) TCGA-DD-AAVY-01 20 61948009 61948009 C T COL20A1 Missense_Mutation p.L877F 0.13 deleterious(0) possibly_damaging(0.887) TCGA-DD-AAVY-01 21 35751763 35751763 T C SMIM11 5'UTR 0.44 TCGA-DD-AAVY-01 22 29196386 29196386 G A XBP1 Nonsense_Mutation p.Q43* 0.70 TCGA-DD-AAVY-01 2 114500441 114500441 C A SLC35F5 Missense_Mutation p.R193L 0.35 tolerated(0.13) benign(0.01) TCGA-DD-AAVY-01 2 178098804 178098804 C G NFE2L2 Missense_Mutation p.G81R 0.56 deleterious(0) probably_damaging(1) TCGA-DD-AAVY-01 2 196573489 196573489 T G SLC39A10 Missense_Mutation p.L499R 0.16 deleterious(0) probably_damaging(1) TCGA-DD-AAVY-01 2 203996824 203996824 T G NBEAL1 Missense_Mutation p.I1202M 0.46 tolerated(0.05) benign(0.024) TCGA-DD-AAVY-01 2 20884664 20884664 T C C2orf43 3'Flank 0.42 TCGA-DD-AAVY-01 2 211465358 211465358 T C CPS1 Silent p.A549A 0.50 TCGA-DD-AAVY-01 2 215880217 215880217 G - ABCA12 Frame_Shift_Del p.Y651* 0.29 TCGA-DD-AAVY-01 2 39006178 39006178 A G GEMIN6 Missense_Mutation p.I16V 0.48 tolerated(1) benign(0.001) TCGA-DD-AAVY-01 2 5841200 5841200 C A SOX11 3'UTR 0.44 TCGA-DD-AAVY-01 3 127336848 127336848 A G MCM2 Missense_Mutation p.N646S 0.48 deleterious(0) probably_damaging(1) TCGA-DD-AAVY-01 3 128987352 128987352 A T COPG1 Missense_Mutation p.I555F 0.45 deleterious(0.02) benign(0.187) TCGA-DD-AAVY-01 3 165548042 165548042 C T BCHE Silent p.A260A 0.42 TCGA-DD-AAVY-01 3 194409683 194409683 A G FAM43A 3'UTR 0.56 TCGA-DD-AAVY-01 3 37670934 37670934 G A ITGA9 Intron 0.53 TCGA-DD-AAVY-01 3 38127869 38127870 GT - DLEC1 Splice_Site p.X524_splice 0.28 TCGA-DD-AAVY-01 3 41266097 41266097 G A CTNNB1 Missense_Mutation p.D32N 0.42 deleterious(0.05) possibly_damaging(0.686) TCGA-DD-AAVY-01 4 145567951 145567951 G T HHIP Missense_Mutation p.G42W 0.49 deleterious(0.01) probably_damaging(1) TCGA-DD-AAVY-01 4 54256024 54256024 A G FIP1L1 Silent p.R127R 0.41 TCGA-DD-AAVY-01 4 80328951 80328951 T A GK2 Missense_Mutation p.N135I 0.48 deleterious(0.02) possibly_damaging(0.786) TCGA-DD-AAVY-01 4 85663028 85663028 T C WDFY3 Silent p.V2040V 0.43 TCGA-DD-AAVY-01 5 1221377 1221377 C T SLC6A19 Silent p.F550F 0.28 TCGA-DD-AAVY-01 5 139507500 139507500 A G IGIP 5'UTR 0.39 TCGA-DD-AAVY-01 5 145610267 145610267 A G RBM27 Missense_Mutation p.S213G 0.32 tolerated(0.58) benign(0.001) TCGA-DD-AAVY-01 5 164028348 164028348 G A CTC-340A15.2 RNA 0.27 TCGA-DD-AAVY-01 5 19473502 19473502 G T CDH18 Missense_Mutation p.Q736K 0.30 deleterious(0.02) benign(0.412) TCGA-DD-AAVY-01 5 26881347 26881347 G T CDH9 Silent p.L756L 0.40 TCGA-DD-AAVY-01 5 26881348 26881348 A T CDH9 Missense_Mutation p.L756H 0.41 tolerated(0.55) possibly_damaging(0.807) TCGA-DD-AAVY-01 5 33984462 33984462 A T SLC45A2 Missense_Mutation p.L76H 0.05 deleterious(0) probably_damaging(0.976) TCGA-DD-AAVY-01 6 146480653 146480653 C A GRM1 Missense_Mutation p.F290L 0.95 deleterious(0) probably_damaging(0.936) TCGA-DD-AAVY-01 6 160188168 160188168 A G ACAT2 Missense_Mutation p.I108V 0.89 tolerated(0.56) benign(0) TCGA-DD-AAVY-01 6 168319445 168319445 G T MLLT4 Nonsense_Mutation p.E907* 0.93 TCGA-DD-AAVY-01 6 17628999 17628999 T C NUP153 Missense_Mutation p.E1144G 0.71 deleterious(0.02) benign(0.034) TCGA-DD-AAVY-01 6 38754613 38754613 T C DNAH8 Missense_Mutation p.L606S 0.23 benign(0.261) TCGA-DD-AAVY-01 6 44081735 44081735 G A MRPL14 Nonsense_Mutation p.R95* 0.18 TCGA-DD-AAVY-01 6 96034647 96034647 A G MANEA Missense_Mutation p.Y111C 0.86 deleterious(0) probably_damaging(0.971) TCGA-DD-AAVY-01 7 103214576 103214576 C T RELN Missense_Mutation p.E1492K 0.43 deleterious(0.01) possibly_damaging(0.798) TCGA-DD-AAVY-01 7 105183036 105183036 T A RINT1 Missense_Mutation p.I152N 0.47 deleterious(0) possibly_damaging(0.738) TCGA-DD-AAVY-01 7 11416274 11416274 T C THSD7A Silent p.L1604L 0.65 TCGA-DD-AAVY-01 7 127222825 127222825 A C GCC1 Missense_Mutation p.L524R 0.48 deleterious(0) possibly_damaging(0.86) TCGA-DD-AAVY-01 7 134849312 134849312 C G TMEM140 Missense_Mutation p.T40S 0.11 deleterious(0.04) benign(0.108) TCGA-DD-AAVY-01 7 56147312 56147312 G A SUMF2 Silent p.P275P 0.37 TCGA-DD-AAVY-01 7 96318082 96318082 T C SHFM1 3'UTR 0.40 TCGA-DD-AAVY-01 8 103291424 103291424 T A UBR5 Missense_Mutation p.N2005I 0.22 tolerated(0.19) benign(0.143) TCGA-DD-AAVY-01 8 11301674 11301674 G T FAM167A Missense_Mutation p.L83I 0.77 tolerated(0.29) benign(0.002) TCGA-DD-AAVY-01 8 12886082 12886082 T C KIAA1456 3'UTR 0.21 TCGA-DD-AAVY-01 8 144895190 144895190 C A SCRIB Intron 0.73 TCGA-DD-AAVY-01 8 27315938 27315938 A G PTK2B Missense_Mutation p.H981R 0.81 deleterious(0) probably_damaging(1) TCGA-DD-AAVY-01 8 55055240 55055240 G A MRPL15 Silent p.T149T 0.08 TCGA-DD-AAVY-01 9 113703757 113703757 G T LPAR1 Missense_Mutation p.P246H 0.53 tolerated(0.33) possibly_damaging(0.771) TCGA-DD-AAVY-01 9 34725141 34725141 G A FAM205A Missense_Mutation p.S699F 0.12 deleterious(0) possibly_damaging(0.648) TCGA-DD-AAVY-01 9 34834203 34834203 G A FAM205B RNA 0.30 TCGA-DD-AAVY-01 9 35853536 35853536 C T TMEM8B Missense_Mutation p.P373L 0.39 deleterious(0) probably_damaging(0.999) TCGA-DD-AAVY-01 9 74863296 74863296 G T GDA Intron 0.49 TCGA-DD-AAVY-01 9 75407157 75407157 T C TMC1 Silent p.N485N 0.41 TCGA-DD-AAVY-01 9 77681717 77681717 A G NMRK1 Missense_Mutation p.L179S 0.43 tolerated(1) benign(0.001) TCGA-DD-AAVY-01 X 100880445 100880445 T A ARMCX3 Missense_Mutation p.I159N 0.47 deleterious(0) probably_damaging(0.986) TCGA-DD-AAVY-01 X 103041449 103041449 G - PLP1 Frame_Shift_Del p.A84Pfs*30 0.31 TCGA-DD-AAVY-01 X 136113550 136113550 A G GPR101 Missense_Mutation p.L95P 0.97 tolerated(0.21) benign(0.034) TCGA-DD-AAVY-01 X 19416359 19416359 G C MAP3K15 Missense_Mutation p.P684R 0.91 tolerated(0.07) probably_damaging(0.985) TCGA-DD-AAVY-01 X 48456699 48456699 C T WDR13 Intron 0.80 TCGA-DD-AAVZ-01 10 100017527 100017527 G A LOXL4 Silent p.C380C 0.41 TCGA-DD-AAVZ-01 10 25464914 25464914 C A GPR158 Missense_Mutation p.Q189K 0.37 tolerated(0.09) benign(0.027) TCGA-DD-AAVZ-01 10 25886779 25886779 A T GPR158 Nonsense_Mutation p.K742* 0.03 TCGA-DD-AAVZ-01 10 38121102 38121102 T C ZNF248 Missense_Mutation p.N394S 0.37 tolerated(0.44) probably_damaging(0.992) TCGA-DD-AAVZ-01 11 47269901 47269901 G A ACP2 Intron 0.40 TCGA-DD-AAVZ-01 11 56057636 56057636 A G OR8H1 Silent p.I301I 0.39 TCGA-DD-AAVZ-01 11 6261724 6261724 G A CNGA4 Missense_Mutation p.D234N 0.04 deleterious(0) probably_damaging(1) TCGA-DD-AAVZ-01 11 73849880 73849880 C A C2CD3 Missense_Mutation p.Q280H 0.36 tolerated(0.15) benign(0.059) TCGA-DD-AAVZ-01 12 129190519 129190519 G A TMEM132C Silent p.P1002P 0.39 TCGA-DD-AAVZ-01 12 42503406 42503407 - T GXYLT1 Frame_Shift_Ins p.L192Tfs*3 0.28 TCGA-DD-AAVZ-01 12 49719613 49719613 G A TROAP Silent p.L193L 0.39 TCGA-DD-AAVZ-01 12 70088201 70088201 A G BEST3 Missense_Mutation p.S66P 0.33 deleterious(0.01) probably_damaging(0.979) TCGA-DD-AAVZ-01 12 80732976 80732977 - C OTOGL Frame_Shift_Ins p.T1653Yfs*13 0.26 TCGA-DD-AAVZ-01 14 103806063 103806063 A T EIF5 Nonsense_Mutation p.K332* 0.40 TCGA-DD-AAVZ-01 14 27066696 27066696 T A NOVA1 5'UTR 0.26 TCGA-DD-AAVZ-01 14 94420805 94420805 G A ASB2 Silent p.A112A 0.39 TCGA-DD-AAVZ-01 15 65412278 65412278 C T PDCD7 Missense_Mutation p.A342T 0.43 tolerated(0.38) benign(0.067) TCGA-DD-AAVZ-01 16 347839 347843 CGGGT - AXIN1 Frame_Shift_Del p.T555Qfs*34 0.54 TCGA-DD-AAVZ-01 17 41245576 41245576 T C BRCA1 Missense_Mutation p.M658V 0.35 tolerated(0.74) benign(0.009) TCGA-DD-AAVZ-01 17 76236236 76236236 G T TMEM235 3'UTR 0.52 TCGA-DD-AAVZ-01 19 56156193 56156193 T C ZNF581 Missense_Mutation p.C86R 0.35 tolerated(0.35) benign(0.001) TCGA-DD-AAVZ-01 19 57066902 57066902 T C ZFP28 3'UTR 0.22 TCGA-DD-AAVZ-01 19 5719971 5719971 C T LONP1 Missense_Mutation p.G58D 0.04 tolerated_low_confidence(0.07) benign(0.015) TCGA-DD-AAVZ-01 1 111730233 111730233 C T DENND2D Silent p.V470V 0.47 TCGA-DD-AAVZ-01 1 112042811 112042811 C T ADORA3 Intron 0.45 TCGA-DD-AAVZ-01 1 15793937 15793937 C T CELA2A Silent p.H232H 0.60 TCGA-DD-AAVZ-01 1 185259914 185259914 C T SWT1 Silent p.D894D 0.17 TCGA-DD-AAVZ-01 1 185892673 185892673 T A HMCN1 Silent p.I391I 0.17 TCGA-DD-AAVZ-01 1 200522763 200522764 AC - KIF14 Frame_Shift_Del p.V1567Pfs*9 0.39 TCGA-DD-AAVZ-01 1 200635154 200635154 G T DDX59 Missense_Mutation p.L239M 0.22 tolerated(0.22) benign(0.063) TCGA-DD-AAVZ-01 1 2082320 2082320 G A PRKCZ Missense_Mutation p.R260H 0.68 deleterious(0.02) probably_damaging(0.995) TCGA-DD-AAVZ-01 1 240371876 240371876 C G FMN2 Missense_Mutation p.P1255R 0.17 possibly_damaging(0.456) TCGA-DD-AAVZ-01 1 61743211 61743212 - C NFIA Frame_Shift_Ins p.S240Qfs*5 0.36 TCGA-DD-AAVZ-01 21 40558988 40558988 T G BRWD1 Missense_Mutation p.L2309F 0.40 tolerated_low_confidence(0.52) benign(0) TCGA-DD-AAVZ-01 21 43892874 43892874 C T RSPH1 3'UTR 0.34 TCGA-DD-AAVZ-01 22 21363573 21363573 G A AC002472.1 5'Flank 0.39 TCGA-DD-AAVZ-01 22 21363577 21363577 T C AC002472.1 5'Flank 0.36 TCGA-DD-AAVZ-01 2 113481328 113481328 G A NT5DC4 Silent p.K209K 0.34 TCGA-DD-AAVZ-01 2 135809890 135809890 A G RAB3GAP1 Missense_Mutation p.S5G 0.34 deleterious_low_confidence(0.04) benign(0.063) TCGA-DD-AAVZ-01 2 216241231 216241231 G A FN1 Silent p.Y1959Y 0.45 TCGA-DD-AAVZ-01 2 220080755 220080755 G A ABCB6 Missense_Mutation p.A373V 0.24 tolerated(1) benign(0.001) TCGA-DD-AAVZ-01 2 241494429 241494429 C A ANKMY1 5'UTR 0.05 TCGA-DD-AAVZ-01 2 71577248 71577248 G A ZNF638 Silent p.V388V 0.38 TCGA-DD-AAVZ-01 2 98887262 98887262 C A VWA3B Silent p.I987I 0.37 TCGA-DD-AAVZ-01 3 124560396 124560396 T G ITGB5 Missense_Mutation p.Y205S 0.43 tolerated(0.13) probably_damaging(0.989) TCGA-DD-AAVZ-01 3 138664931 138664931 G C FOXL2 Missense_Mutation p.P212A 0.06 deleterious(0.01) possibly_damaging(0.539) TCGA-DD-AAVZ-01 3 38739634 38739634 C T SCN10A Missense_Mutation p.G1693R 0.42 deleterious(0) probably_damaging(0.998) TCGA-DD-AAVZ-01 3 53125943 53125943 G C RFT1 Silent p.P534P 0.42 TCGA-DD-AAVZ-01 4 139994674 139994674 T C ELF2 Missense_Mutation p.I96V 0.35 deleterious(0.01) possibly_damaging(0.907) TCGA-DD-AAVZ-01 4 85742383 85742383 G A WDFY3 Missense_Mutation p.A482V 0.04 deleterious(0.02) probably_damaging(0.909) TCGA-DD-AAVZ-01 5 127483354 127483354 C G SLC12A2 Missense_Mutation p.A605G 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AAVZ-01 5 140516627 140516627 C T PCDHB5 Silent p.S537S 0.43 TCGA-DD-AAVZ-01 5 61877102 61877102 C T LRRC70 Nonsense_Mutation p.Q613* 0.32 TCGA-DD-AAVZ-01 5 65309395 65309395 T C ERBB2IP Silent p.S135S 0.10 TCGA-DD-AAVZ-01 6 70037730 70037730 T G BAI3 Missense_Mutation p.V995G 0.47 deleterious(0) probably_damaging(0.998) TCGA-DD-AAVZ-01 7 86554856 86554856 C T KIAA1324L Missense_Mutation p.D463N 0.35 tolerated(0.11) benign(0.22) TCGA-DD-AAVZ-01 7 92028409 92028409 T C ANKIB1 3'UTR 0.37 TCGA-DD-AAVZ-01 7 98997955 98997955 G A PDAP1 Silent p.D102D 0.45 TCGA-DD-AAVZ-01 8 113293433 113293433 T C CSMD3 Missense_Mutation p.T3160A 0.13 deleterious(0.01) benign(0.411) TCGA-DD-AAVZ-01 8 146277849 146277849 C T C8orf33 5'UTR 0.26 TCGA-DD-AAVZ-01 8 1851631 1851631 T C ARHGEF10 Intron 0.11 TCGA-DD-AAVZ-01 8 42586871 42586871 G C CHRNB3 Missense_Mutation p.V141L 0.67 deleterious(0.01) benign(0.174) TCGA-DD-AAVZ-01 9 139272186 139272186 G A SNAPC4 Missense_Mutation p.R1365W 0.35 deleterious(0) possibly_damaging(0.857) TCGA-DD-AAVZ-01 9 32629802 32629802 G A TAF1L 3'UTR 0.50 TCGA-DD-AAVZ-01 X 155004171 155004171 G A SPRY3 Missense_Mutation p.C213Y 0.13 deleterious(0) probably_damaging(1) TCGA-DD-AAVZ-01 X 37027755 37027755 C G FAM47C Silent p.S424S 0.74 TCGA-DD-AAVZ-01 X 69353836 69353836 C A IGBP1 Silent p.P13P 0.74 TCGA-DD-AAVZ-01 X 69498423 69498423 C A ARR3 Nonsense_Mutation p.C279* 0.74 TCGA-DD-AAVZ-01 Y 15447912 15447912 C T UTY Missense_Mutation p.D692N 0.76 tolerated_low_confidence(0.48) benign(0) TCGA-DD-AAW0-01 10 104156557 104156557 C G NFKB2 Missense_Mutation p.R74G 0.23 deleterious(0) benign(0.226) TCGA-DD-AAW0-01 10 114169431 114169431 A T ACSL5 Silent p.L289L 0.19 TCGA-DD-AAW0-01 10 28897314 28897314 G A WAC Silent p.T373T 0.24 TCGA-DD-AAW0-01 10 79397504 79397504 C T KCNMA1 5'Flank 0.29 TCGA-DD-AAW0-01 11 111789635 111789635 C T C11orf52 5'UTR 0.17 TCGA-DD-AAW0-01 11 125830853 125830853 T A CDON Missense_Mutation p.Q1283L 0.23 deleterious_low_confidence(0) possibly_damaging(0.701) TCGA-DD-AAW0-01 11 22646577 22646577 C T FANCF Silent p.L260L 0.13 TCGA-DD-AAW0-01 11 541550 541550 G T LRRC56 Missense_Mutation p.R64L 0.23 tolerated(0.18) benign(0.003) TCGA-DD-AAW0-01 11 6486929 6486929 G A TRIM3 5'UTR 0.16 TCGA-DD-AAW0-01 11 67015791 67015791 T A KDM2A Missense_Mutation p.C669S 0.18 tolerated(0.18) probably_damaging(0.974) TCGA-DD-AAW0-01 12 101573838 101573838 G A SLC5A8 Missense_Mutation p.A401V 0.18 tolerated(0.32) benign(0.032) TCGA-DD-AAW0-01 12 113357264 113357264 C A OAS1 Intron 0.21 TCGA-DD-AAW0-01 12 125397889 125397889 C A UBC Silent p.L143L 0.21 TCGA-DD-AAW0-01 12 129308302 129308302 T A SLC15A4 Missense_Mutation p.N63Y 0.19 deleterious(0) probably_damaging(0.984) TCGA-DD-AAW0-01 12 13366426 13366426 C A EMP1 Missense_Mutation p.S31Y 0.18 tolerated(0.09) possibly_damaging(0.879) TCGA-DD-AAW0-01 12 39725561 39725561 G A KIF21A Silent p.V1028V 0.05 TCGA-DD-AAW0-01 12 4923656 4923656 C T KCNA6 3'UTR 0.23 TCGA-DD-AAW0-01 12 53689386 53689386 T A PFDN5 Missense_Mutation p.L12Q 0.27 deleterious(0) probably_damaging(0.959) TCGA-DD-AAW0-01 12 56495091 56495091 G C ERBB3 Missense_Mutation p.G1150R 0.23 tolerated(0.13) benign(0.087) TCGA-DD-AAW0-01 12 57591115 57591115 A G LRP1 Missense_Mutation p.Y3037C 0.28 probably_damaging(0.999) TCGA-DD-AAW0-01 13 101184170 101184170 A G GGACT 3'UTR 0.24 TCGA-DD-AAW0-01 13 43566216 43566216 C T EPSTI1 Missense_Mutation p.G29E 0.27 tolerated(0.05) benign(0.081) TCGA-DD-AAW0-01 13 77650985 77650985 C G MYCBP2 Splice_Site p.X3871_splice 0.15 TCGA-DD-AAW0-01 13 79190261 79190261 C T RNF219 Missense_Mutation p.M545I 0.30 deleterious(0.03) probably_damaging(0.985) TCGA-DD-AAW0-01 14 105414494 105414495 - TTT AHNAK2 In_Frame_Ins p.K2431dup 0.20 TCGA-DD-AAW0-01 14 45403543 45403543 T C KLHL28 Missense_Mutation p.N373S 0.27 tolerated(1) benign(0.002) TCGA-DD-AAW0-01 14 75369143 75369143 T A DLST 3'UTR 0.17 TCGA-DD-AAW0-01 14 80669241 80669241 G T DIO2 Missense_Mutation p.P241T 0.21 deleterious(0.04) probably_damaging(0.949) TCGA-DD-AAW0-01 15 28516001 28516001 G A HERC2 Missense_Mutation p.P366L 0.22 benign(0) TCGA-DD-AAW0-01 15 34517292 34517292 A C EMC4 5'UTR 0.19 TCGA-DD-AAW0-01 15 65957785 65957785 T C DENND4A Missense_Mutation p.M1752V 0.27 deleterious(0.04) benign(0.025) TCGA-DD-AAW0-01 15 77320928 77320928 G T PSTPIP1 Missense_Mutation p.A151S 0.25 deleterious(0.04) benign(0.214) TCGA-DD-AAW0-01 15 81224345 81224347 AAC - KIAA1199 In_Frame_Del p.N921del 0.29 TCGA-DD-AAW0-01 16 1399610 1399610 C T TSR3 Splice_Site p.X256_splice 0.13 TCGA-DD-AAW0-01 16 2815588 2815588 C T SRRM2 Nonsense_Mutation p.R1687* 0.42 TCGA-DD-AAW0-01 17 27442372 27442372 T C MYO18A Missense_Mutation p.N772S 0.19 deleterious(0) probably_damaging(0.999) TCGA-DD-AAW0-01 17 27939496 27939496 G A ANKRD13B Silent p.S445S 0.26 TCGA-DD-AAW0-01 17 30817836 30817836 C A CDK5R1 3'UTR 0.20 TCGA-DD-AAW0-01 17 39018821 39018821 A G KRT12 Silent p.S461S 0.21 TCGA-DD-AAW0-01 17 39273866 39273866 T C KRTAP4-11 3'UTR 0.23 TCGA-DD-AAW0-01 17 57963509 57963509 T G TUBD1 Missense_Mutation p.Q85H 0.34 tolerated(0.3) benign(0.002) TCGA-DD-AAW0-01 17 59968916 59968916 G T INTS2 Silent p.V619V 0.07 TCGA-DD-AAW0-01 17 62496761 62496761 G A DDX5 Silent p.N449N 0.28 TCGA-DD-AAW0-01 17 62800952 62800952 C T PLEKHM1P RNA 0.06 TCGA-DD-AAW0-01 17 8064053 8064053 C A VAMP2 3'UTR 0.50 TCGA-DD-AAW0-01 17 8424298 8424298 T A MYH10 Missense_Mutation p.H724L 0.20 possibly_damaging(0.653) TCGA-DD-AAW0-01 18 19399526 19399526 T G MIB1 Missense_Mutation p.L583W 0.28 deleterious(0) probably_damaging(0.997) TCGA-DD-AAW0-01 18 29339948 29339948 C - SLC25A52 Frame_Shift_Del p.G236Dfs*10 0.17 TCGA-DD-AAW0-01 18 50450079 50450079 C T DCC Missense_Mutation p.P234S 0.21 tolerated(0.39) benign(0.002) TCGA-DD-AAW0-01 18 76753827 76753827 C A SALL3 Silent p.P612P 0.21 TCGA-DD-AAW0-01 19 12574958 12574958 C T ZNF709 Missense_Mutation p.C593Y 0.20 deleterious(0.02) possibly_damaging(0.715) TCGA-DD-AAW0-01 19 41518307 41518307 C T CYP2B6 Nonsense_Mutation p.Q357* 0.23 TCGA-DD-AAW0-01 19 49513749 49513749 A G RUVBL2 Missense_Mutation p.K223R 0.28 tolerated(0.46) benign(0.026) TCGA-DD-AAW0-01 19 49547453 49547453 G T CGB5 5'UTR 0.15 TCGA-DD-AAW0-01 19 53794575 53794575 G A BIRC8 5'UTR 0.08 TCGA-DD-AAW0-01 19 58152529 58152529 A G ZNF211 Silent p.G290G 0.23 TCGA-DD-AAW0-01 1 109944673 109944673 T A PSMA5 Missense_Mutation p.T230S 0.23 tolerated(0.94) benign(0) TCGA-DD-AAW0-01 1 11721248 11721248 G A FBXO44 Missense_Mutation p.G229D 0.24 deleterious(0) probably_damaging(1) TCGA-DD-AAW0-01 1 152082304 152082304 T G TCHH Missense_Mutation p.K1130T 0.34 unknown(0) TCGA-DD-AAW0-01 1 157737287 157737287 C T FCRL2 Missense_Mutation p.R299H 0.10 tolerated(0.33) benign(0.028) TCGA-DD-AAW0-01 1 182920459 182920459 C A SHCBP1L Missense_Mutation p.L183F 0.12 deleterious(0.03) possibly_damaging(0.609) TCGA-DD-AAW0-01 1 235506932 235506933 CC T GGPS1 3'UTR 0.11 TCGA-DD-AAW0-01 1 40092692 40092692 G A HEYL Silent p.A158A 0.06 TCGA-DD-AAW0-01 1 70502269 70502269 A T LRRC7 Silent p.T712T 0.21 TCGA-DD-AAW0-01 1 74549690 74549690 T C LRRIQ3 Intron 0.13 TCGA-DD-AAW0-01 20 35128903 35128903 C T DLGAP4 Missense_Mutation p.R798C 0.16 deleterious(0.01) possibly_damaging(0.888) TCGA-DD-AAW0-01 21 30458223 30458223 G A MAP3K7CL Silent p.E14E 0.28 TCGA-DD-AAW0-01 21 31654604 31654604 G A KRTAP24-1 Missense_Mutation p.T216M 0.13 tolerated(0.23) benign(0) TCGA-DD-AAW0-01 22 20457887 20457887 C A RIMBP3 Missense_Mutation p.A1139S 0.09 tolerated(0.19) benign(0.041) TCGA-DD-AAW0-01 22 20976006 20976006 A G SMPD4P1 RNA 0.11 TCGA-DD-AAW0-01 22 24581177 24581177 G A SUSD2 Missense_Mutation p.E300K 0.18 deleterious(0) probably_damaging(0.98) TCGA-DD-AAW0-01 2 108609543 108609543 G A SLC5A7 Missense_Mutation p.M136I 0.06 tolerated(0.26) benign(0.017) TCGA-DD-AAW0-01 2 145147276 145147276 A T ZEB2 Missense_Mutation p.S1129R 0.22 deleterious(0.03) benign(0.006) TCGA-DD-AAW0-01 2 162280837 162280837 C T TBR1 3'UTR 0.10 TCGA-DD-AAW0-01 2 179437226 179437226 G T TTN Missense_Mutation p.L24545I 0.22 TCGA-DD-AAW0-01 2 1842975 1842975 G T MYT1L Missense_Mutation p.T1007K 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-DD-AAW0-01 2 235962531 235962531 C T SH3BP4 3'UTR 0.14 TCGA-DD-AAW0-01 2 238725876 238725876 A G RBM44 Missense_Mutation p.Y106C 0.25 tolerated(0.37) benign(0.013) TCGA-DD-AAW0-01 2 25966307 25966307 T C ASXL2 Missense_Mutation p.I967V 0.38 deleterious(0) probably_damaging(0.992) TCGA-DD-AAW0-01 2 31154985 31154985 C T GALNT14 Missense_Mutation p.R341Q 0.24 deleterious(0) probably_damaging(1) TCGA-DD-AAW0-01 2 64779969 64779969 A G AFTPH Missense_Mutation p.D454G 0.26 deleterious(0.01) possibly_damaging(0.812) TCGA-DD-AAW0-01 2 71060827 71060827 C T CD207 Missense_Mutation p.R172Q 0.16 tolerated(0.99) benign(0.002) TCGA-DD-AAW0-01 2 79971559 79971559 A C CTNNA2 Missense_Mutation p.K50T 0.26 deleterious(0.03) possibly_damaging(0.697) TCGA-DD-AAW0-01 2 97637835 97637835 G T FAM178B Missense_Mutation p.L123M 0.23 tolerated_low_confidence(0.1) possibly_damaging(0.807) TCGA-DD-AAW0-01 3 120500204 120500204 T C GTF2E1 Missense_Mutation p.F403L 0.17 tolerated(0.44) benign(0.257) TCGA-DD-AAW0-01 3 150321156 150321156 C T SELT Missense_Mutation p.L3F 0.04 tolerated_low_confidence(0.35) benign(0) TCGA-DD-AAW0-01 3 186360348 186360349 - T FETUB Splice_Site p.X142_splice 0.15 TCGA-DD-AAW0-01 3 38043300 38043300 C T VILL Silent p.S476S 0.29 TCGA-DD-AAW0-01 3 56026116 56026116 C G ERC2 Missense_Mutation p.D742H 0.24 deleterious(0.02) probably_damaging(0.981) TCGA-DD-AAW0-01 3 72799710 72799710 T C SHQ1 Missense_Mutation p.T487A 0.20 tolerated_low_confidence(0.75) benign(0.001) TCGA-DD-AAW0-01 3 73046215 73046215 G T PPP4R2 Silent p.A9A 0.26 TCGA-DD-AAW0-01 3 97868486 97868486 T C OR5H14 Missense_Mutation p.L86S 0.24 deleterious(0.04) benign(0.089) TCGA-DD-AAW0-01 3 9988877 9988877 C T PRRT3 Nonsense_Mutation p.W660* 0.27 TCGA-DD-AAW0-01 4 102839251 102839251 G C BANK1 Missense_Mutation p.A371P 0.32 deleterious(0) probably_damaging(0.999) TCGA-DD-AAW0-01 4 122828649 122828649 G C TRPC3 Missense_Mutation p.S622R 0.27 deleterious(0) probably_damaging(1) TCGA-DD-AAW0-01 4 141323176 141323176 T C CLGN Missense_Mutation p.Y155C 0.32 deleterious(0) probably_damaging(1) TCGA-DD-AAW0-01 4 141331017 141331017 A G CLGN Missense_Mutation p.M84T 0.27 tolerated(1) benign(0) TCGA-DD-AAW0-01 4 186357237 186357237 C G C4orf47 Missense_Mutation p.P120A 0.29 tolerated(0.05) benign(0.233) TCGA-DD-AAW0-01 4 47625593 47625593 G A CORIN Silent p.F845F 0.20 TCGA-DD-AAW0-01 4 74285302 74285311 TTTTGTAGAG - ALB Frame_Shift_Del p.F578Sfs*27 0.16 TCGA-DD-AAW0-01 4 78694248 78694248 A G CNOT6L Silent p.T129T 0.30 TCGA-DD-AAW0-01 4 85414495 85414495 C T NKX6-1 Missense_Mutation p.G351S 0.08 tolerated_low_confidence(0.2) unknown(0) TCGA-DD-AAW0-01 4 8605908 8605908 C T CPZ Silent p.H234H 0.21 TCGA-DD-AAW0-01 5 127670429 127670429 C T FBN2 Missense_Mutation p.G1361R 0.18 deleterious(0) possibly_damaging(0.783) TCGA-DD-AAW0-01 5 148695457 148695457 G A AFAP1L1 Missense_Mutation p.R365H 0.17 tolerated(0.48) benign(0.002) TCGA-DD-AAW0-01 5 162901124 162901124 A T HMMR Missense_Mutation p.L322F 0.17 deleterious(0.03) probably_damaging(0.951) TCGA-DD-AAW0-01 5 168176483 168176483 A T SLIT3 Missense_Mutation p.C711S 0.22 deleterious(0.01) benign(0.011) TCGA-DD-AAW0-01 5 176829263 176829263 C A F12 3'UTR 0.15 TCGA-DD-AAW0-01 5 35654695 35654695 A G SPEF2 Missense_Mutation p.N282S 0.20 tolerated(0.45) benign(0.017) TCGA-DD-AAW0-01 5 49701580 49701580 G A EMB Silent p.Y193Y 0.06 TCGA-DD-AAW0-01 5 54701259 54701259 A G SKIV2L2 Missense_Mutation p.I830V 0.27 tolerated(0.22) benign(0) TCGA-DD-AAW0-01 5 54965110 54965110 C T SLC38A9 Missense_Mutation p.G158S 0.22 deleterious(0.03) possibly_damaging(0.753) TCGA-DD-AAW0-01 5 56255334 56255334 C T MIER3 5'UTR 0.19 TCGA-DD-AAW0-01 5 70952644 70952644 A G MCCC2 Missense_Mutation p.N550S 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.801) TCGA-DD-AAW0-01 5 72189057 72189058 CT - TNPO1 Frame_Shift_Del p.L628Cfs*14 0.20 TCGA-DD-AAW0-01 6 106967341 106967341 T G AIM1 Missense_Mutation p.V345G 0.24 tolerated(0.09) benign(0.006) TCGA-DD-AAW0-01 6 10911072 10911072 G T SYCP2L Silent p.P296P 0.35 TCGA-DD-AAW0-01 6 109764501 109764501 G A SMPD2 Missense_Mutation p.S254N 0.22 tolerated(0.31) benign(0.014) TCGA-DD-AAW0-01 6 153332802 153332802 A C RGS17 Silent p.T180T 0.07 TCGA-DD-AAW0-01 6 32093947 32093947 G T ATF6B Missense_Mutation p.S142Y 0.19 deleterious(0.04) benign(0.197) TCGA-DD-AAW0-01 6 45514837 45514837 A G RUNX2 Missense_Mutation p.Y454C 0.28 deleterious(0) probably_damaging(0.999) TCGA-DD-AAW0-01 6 76538320 76538320 A T MYO6 Missense_Mutation p.D84V 0.24 deleterious(0) unknown(0) TCGA-DD-AAW0-01 7 100410715 100410715 A - EPHB4 Splice_Site p.X624_splice 0.11 TCGA-DD-AAW0-01 7 4245519 4245519 A G SDK1 Missense_Mutation p.M1703V 0.25 tolerated(0.46) benign(0.002) TCGA-DD-AAW0-01 7 43447201 43447201 C T HECW1 Silent p.N224N 0.08 TCGA-DD-AAW0-01 7 81603858 81603858 T G CACNA2D1 Missense_Mutation p.N656H 0.21 deleterious(0) possibly_damaging(0.632) TCGA-DD-AAW0-01 7 86567441 86567441 C G KIAA1324L Splice_Site p.X363_splice 0.21 TCGA-DD-AAW0-01 8 136561090 136561090 G T KHDRBS3 Missense_Mutation p.A140S 0.41 deleterious(0.02) probably_damaging(0.998) TCGA-DD-AAW0-01 8 145113729 145113729 C T OPLAH Silent p.G178G 0.43 TCGA-DD-AAW0-01 8 88885667 88885667 C A DCAF4L2 Missense_Mutation p.C178F 0.06 tolerated(0.08) benign(0.41) TCGA-DD-AAW0-01 9 123476253 123476253 C T MEGF9 Silent p.P128P 0.25 TCGA-DD-AAW0-01 9 139886992 139886992 G C C9orf142 Missense_Mutation p.D33H 0.11 tolerated(0.06) possibly_damaging(0.792) TCGA-DD-AAW0-01 9 328171 328171 G C DOCK8 Missense_Mutation p.K348N 0.19 deleterious(0) probably_damaging(0.999) TCGA-DD-AAW0-01 X 110495540 110495540 T C CAPN6 Missense_Mutation p.I232V 0.40 deleterious(0.02) benign(0.394) TCGA-DD-AAW0-01 X 7252038 7252038 G A STS Missense_Mutation p.G423E 0.31 deleterious(0) probably_damaging(1) TCGA-DD-AAW1-01 10 115336952 115336952 T G HABP2 Missense_Mutation p.C125W 0.03 deleterious(0) probably_damaging(0.999) TCGA-DD-AAW1-01 10 75283430 75283448 CGAAGTTCCTGTTCCTGCG - USP54 Frame_Shift_Del p.A752Efs*8 0.30 TCGA-DD-AAW1-01 10 90768661 90768661 T C FAS Missense_Mutation p.I117T 0.34 tolerated(0.4) benign(0.007) TCGA-DD-AAW1-01 10 95116503 95116503 G A MYOF Missense_Mutation p.R1075C 0.04 deleterious(0.03) benign(0.009) TCGA-DD-AAW1-01 11 100807044 100807044 T C ARHGAP42 Silent p.Y271Y 0.38 TCGA-DD-AAW1-01 11 102650037 102650037 T A MMP10 Nonsense_Mutation p.K135* 0.36 TCGA-DD-AAW1-01 11 110007788 110007788 A C ZC3H12C Missense_Mutation p.K141T 0.35 tolerated(0.13) benign(0.002) TCGA-DD-AAW1-01 11 118343010 118343011 - A KMT2A Frame_Shift_Ins p.A383Gfs*6 0.28 TCGA-DD-AAW1-01 11 124551357 124551357 T C SPA17 Splice_Site p.X75_splice 0.28 TCGA-DD-AAW1-01 11 126870396 126870396 A G KIRREL3 Missense_Mutation p.F4L 0.36 tolerated_low_confidence(0.51) benign(0.001) TCGA-DD-AAW1-01 11 22257809 22257809 A G ANO5 Missense_Mutation p.Y250C 0.42 deleterious(0) possibly_damaging(0.838) TCGA-DD-AAW1-01 11 2436237 2436237 A T TRPM5 Missense_Mutation p.L507Q 0.42 tolerated(0.19) benign(0.025) TCGA-DD-AAW1-01 11 56143291 56143291 C T OR8U1 Silent p.S64S 0.41 TCGA-DD-AAW1-01 11 58274925 58274925 T A OR5B21 Silent p.I218I 0.36 TCGA-DD-AAW1-01 11 89896840 89896840 T A NAALAD2 Intron 0.46 TCGA-DD-AAW1-01 11 93432696 93432696 A T KIAA1731 Missense_Mutation p.R1540W 0.42 deleterious(0) probably_damaging(0.985) TCGA-DD-AAW1-01 12 104149232 104149232 C G STAB2 Missense_Mutation p.C2289W 0.47 deleterious(0) probably_damaging(0.982) TCGA-DD-AAW1-01 12 108960984 108960984 A T ISCU Missense_Mutation p.I120F 0.37 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-DD-AAW1-01 12 11183213 11183213 T A TAS2R31 Missense_Mutation p.Y241F 0.43 tolerated(0.1) benign(0.248) TCGA-DD-AAW1-01 12 53012345 53012345 C T KRT73 5'Flank 0.43 TCGA-DD-AAW1-01 12 64609478 64609478 G T C12orf66 Silent p.I167I 0.06 TCGA-DD-AAW1-01 12 6666361 6666361 T C NOP2 Missense_Mutation p.H779R 0.38 tolerated_low_confidence(0.53) benign(0) TCGA-DD-AAW1-01 12 80328602 80328602 T C PPP1R12A Missense_Mutation p.K37R 0.40 tolerated(0.72) probably_damaging(0.964) TCGA-DD-AAW1-01 13 21562401 21562401 G A LATS2 Silent p.Y506Y 0.42 TCGA-DD-AAW1-01 13 29600389 29600389 G T MTUS2 Missense_Mutation p.K528N 0.43 deleterious(0.03) benign(0.361) TCGA-DD-AAW1-01 13 41946367 41946367 A T NAA16 Missense_Mutation p.K659M 0.41 deleterious(0) probably_damaging(0.989) TCGA-DD-AAW1-01 13 51417697 51417697 C T DLEU7 Missense_Mutation p.G29D 0.55 tolerated(0.12) benign(0.275) TCGA-DD-AAW1-01 14 103987744 103987744 G A CKB Missense_Mutation p.A170V 0.21 tolerated(0.1) benign(0.003) TCGA-DD-AAW1-01 14 24675008 24675008 T C TSSK4 5'UTR 0.52 TCGA-DD-AAW1-01 14 36841098 36841098 A G DPPA3P2 RNA 0.35 TCGA-DD-AAW1-01 14 55650384 55650384 T A DLGAP5 Missense_Mutation p.Q109L 0.37 deleterious(0) probably_damaging(0.979) TCGA-DD-AAW1-01 14 69701705 69701705 A T EXD2 Nonsense_Mutation p.R336* 0.44 TCGA-DD-AAW1-01 14 75412966 75412966 C T PGF Silent p.K145K 0.39 TCGA-DD-AAW1-01 15 29993778 29993778 T C TJP1 3'UTR 0.37 TCGA-DD-AAW1-01 15 51860705 51860705 T A DMXL2 Silent p.I88I 0.44 TCGA-DD-AAW1-01 15 54306719 54306720 - T UNC13C Frame_Shift_Ins p.T543Hfs*3 0.30 TCGA-DD-AAW1-01 15 55759146 55759146 T A DYX1C1 Nonsense_Mutation p.R207* 0.37 TCGA-DD-AAW1-01 15 64386069 64386069 G T FAM96A 5'UTR 0.11 TCGA-DD-AAW1-01 15 75501101 75501101 G A C15orf39 Silent p.Q904Q 0.45 TCGA-DD-AAW1-01 15 86122602 86122602 G T AKAP13 Missense_Mutation p.D435Y 0.40 deleterious_low_confidence(0.04) possibly_damaging(0.814) TCGA-DD-AAW1-01 15 91769596 91769596 G A SV2B Missense_Mutation p.V35I 0.49 deleterious(0) benign(0.098) TCGA-DD-AAW1-01 16 48278525 48278525 C - LONP2 Frame_Shift_Del p.L76Cfs*26 0.32 TCGA-DD-AAW1-01 16 71602186 71602186 C A TAT Missense_Mutation p.C409F 0.43 deleterious(0) possibly_damaging(0.907) TCGA-DD-AAW1-01 16 75203627 75203627 A G ZFP1 Missense_Mutation p.T207A 0.37 deleterious(0.03) benign(0.125) TCGA-DD-AAW1-01 17 20908264 20908264 C T USP22 Silent p.T454T 0.40 TCGA-DD-AAW1-01 17 43332862 43332862 G A SPATA32 Silent p.S229S 0.49 TCGA-DD-AAW1-01 17 49825104 49825104 A T CA10 Silent p.S118S 0.31 TCGA-DD-AAW1-01 17 66865908 66865908 C T ABCA8 Silent p.L1508L 0.27 TCGA-DD-AAW1-01 18 15325895 15325896 CA T RNU6-721P 5'Flank 0.28 TCGA-DD-AAW1-01 19 15131318 15131318 C T CCDC105 Missense_Mutation p.R241W 0.33 deleterious(0) probably_damaging(1) TCGA-DD-AAW1-01 19 20727251 20727251 T A ZNF737 3'UTR 0.58 TCGA-DD-AAW1-01 19 2216983 2216983 C T DOT1L Missense_Mutation p.P813L 0.45 deleterious_low_confidence(0) benign(0.311) TCGA-DD-AAW1-01 19 22847971 22847971 T A ZNF492 Silent p.T500T 0.30 TCGA-DD-AAW1-01 19 39056278 39056278 A G RYR1 Missense_Mutation p.D4435G 0.03 unknown(0) TCGA-DD-AAW1-01 19 42224866 42224866 C T CEACAM5 Missense_Mutation p.S599F 0.41 tolerated(0.28) probably_damaging(0.985) TCGA-DD-AAW1-01 19 4325516 4325516 T A STAP2 Nonsense_Mutation p.K286* 0.39 TCGA-DD-AAW1-01 19 52249870 52249870 G A FPR1 Silent p.C126C 0.45 TCGA-DD-AAW1-01 19 53014421 53014421 A T ZNF578 Missense_Mutation p.I263L 0.41 tolerated(0.19) benign(0.004) TCGA-DD-AAW1-01 19 54310876 54310876 C G NLRP12 Missense_Mutation p.A706P 0.43 tolerated(0.12) possibly_damaging(0.905) TCGA-DD-AAW1-01 19 57722830 57722830 A T ZNF264 Missense_Mutation p.Q122L 0.37 tolerated(0.51) benign(0.003) TCGA-DD-AAW1-01 19 57929405 57929405 A G AC003002.6 Silent p.V59V 0.41 TCGA-DD-AAW1-01 19 9075725 9075725 C T MUC16 Silent p.L3907L 0.48 TCGA-DD-AAW1-01 19 9236857 9236857 C A OR7G3 Missense_Mutation p.G257V 0.49 deleterious(0.01) probably_damaging(0.943) TCGA-DD-AAW1-01 1 11591031 11591031 A T PTCHD2 Missense_Mutation p.K1057M 0.42 deleterious(0) possibly_damaging(0.622) TCGA-DD-AAW1-01 1 13718537 13718537 A G PRAMEF17 Missense_Mutation p.T334A 0.64 tolerated(0.43) benign(0.393) TCGA-DD-AAW1-01 1 13743036 13743036 A T PRAMEF20 Silent p.P75P 0.41 TCGA-DD-AAW1-01 1 154931788 154931788 G A PYGO2 Missense_Mutation p.P230S 0.57 tolerated(0.89) possibly_damaging(0.857) TCGA-DD-AAW1-01 1 155239305 155239305 T A CLK2 Missense_Mutation p.S125C 0.61 tolerated(0.23) possibly_damaging(0.855) TCGA-DD-AAW1-01 1 161021132 161021132 A T ARHGAP30 Silent p.P464P 0.30 TCGA-DD-AAW1-01 1 16271442 16271442 T C ZBTB17 Missense_Mutation p.H306R 0.42 deleterious(0.01) benign(0.075) TCGA-DD-AAW1-01 1 170967477 170967477 C A MROH9 Intron 0.31 TCGA-DD-AAW1-01 1 173457258 173457258 A G PRDX6 3'UTR 0.50 TCGA-DD-AAW1-01 1 175053028 175053028 T A TNN Silent p.T397T 0.61 TCGA-DD-AAW1-01 1 17690224 17690224 T A PADI4 Missense_Mutation p.F656I 0.41 deleterious(0) probably_damaging(0.999) TCGA-DD-AAW1-01 1 17942345 17942345 A T ARHGEF10L Intron 0.35 TCGA-DD-AAW1-01 1 19018334 19018334 A T PAX7 Missense_Mutation p.T225S 0.33 tolerated(0.09) probably_damaging(0.999) TCGA-DD-AAW1-01 1 200558393 200558393 T C KIF14 Missense_Mutation p.I1022M 0.56 tolerated(0.05) benign(0.287) TCGA-DD-AAW1-01 1 214504364 214504364 A T SMYD2 Missense_Mutation p.R296S 0.29 deleterious(0.01) benign(0.013) TCGA-DD-AAW1-01 1 32205547 32205547 A T BAI2 Missense_Mutation p.L716Q 0.41 deleterious(0) probably_damaging(0.99) TCGA-DD-AAW1-01 1 33985196 33985196 G A CSMD2 Silent p.Y3462Y 0.43 TCGA-DD-AAW1-01 1 35350577 35350577 A T DLGAP3 Splice_Site p.X667_splice 0.44 TCGA-DD-AAW1-01 1 40092012 40092012 T A HEYL 3'UTR 0.38 TCGA-DD-AAW1-01 1 43393339 43393339 G A SLC2A1 Silent p.A405A 0.41 TCGA-DD-AAW1-01 1 47278257 47278257 T A CYP4B1 Missense_Mutation p.Y153N 0.32 deleterious(0) benign(0.176) TCGA-DD-AAW1-01 20 23545523 23545523 G T CST9L 3'UTR 0.07 TCGA-DD-AAW1-01 20 31041485 31041485 C T C20orf112 Missense_Mutation p.R156Q 0.38 deleterious(0) possibly_damaging(0.904) TCGA-DD-AAW1-01 20 36014520 36014520 G T SRC Missense_Mutation p.R98M 0.45 tolerated(0.08) probably_damaging(0.935) TCGA-DD-AAW1-01 20 41419871 41419871 C A PTPRT Missense_Mutation p.E150D 0.44 deleterious(0) probably_damaging(0.93) TCGA-DD-AAW1-01 21 10916467 10916467 A T TPTE Nonsense_Mutation p.Y393* 0.09 TCGA-DD-AAW1-01 21 10969094 10969094 C T TPTE Missense_Mutation p.V52M 0.19 tolerated(0.11) benign(0.01) TCGA-DD-AAW1-01 21 30927428 30927428 A T GRIK1 Missense_Mutation p.F851Y 0.48 deleterious(0.01) benign(0.193) TCGA-DD-AAW1-01 21 46021510 46021510 T A KRTAP10-7 Missense_Mutation p.V330D 0.37 deleterious(0) unknown(0) TCGA-DD-AAW1-01 22 18767026 18767026 T A GGT3P RNA 0.17 TCGA-DD-AAW1-01 22 22322015 22322015 T C TOP3B Missense_Mutation p.Q271R 0.47 tolerated(0.65) benign(0.001) TCGA-DD-AAW1-01 22 40283506 40283506 T A ENTHD1 Nonsense_Mutation p.K83* 0.47 TCGA-DD-AAW1-01 2 110053394 110053394 A T SH3RF3 Silent p.G540G 0.46 TCGA-DD-AAW1-01 2 118577227 118577227 A T DDX18 Missense_Mutation p.T125S 0.38 tolerated(0.46) benign(0.002) TCGA-DD-AAW1-01 2 150435994 150435994 G A MMADHC Missense_Mutation p.S108L 0.04 deleterious(0.04) benign(0.41) TCGA-DD-AAW1-01 2 163292032 163292032 A T KCNH7 Missense_Mutation p.Y544N 0.30 deleterious(0) probably_damaging(0.996) TCGA-DD-AAW1-01 2 1652300 1652300 C T PXDN Silent p.L1084L 0.43 TCGA-DD-AAW1-01 2 172563798 172563799 - CCT DYNC1I2 In_Frame_Ins p.P85dup 0.33 TCGA-DD-AAW1-01 2 198950034 198950034 G A PLCL1 Missense_Mutation p.R598K 0.45 tolerated(1) benign(0.006) TCGA-DD-AAW1-01 2 219513536 219513536 G T ZNF142 Silent p.G365G 0.41 TCGA-DD-AAW1-01 2 233709080 233709080 A - GIGYF2 Frame_Shift_Del p.H1055Lfs*16 0.29 TCGA-DD-AAW1-01 2 234255573 234255573 G T SAG 3'UTR 0.42 TCGA-DD-AAW1-01 2 25179973 25179973 T G DNAJC27 Missense_Mutation p.K156T 0.39 deleterious(0.03) benign(0.191) TCGA-DD-AAW1-01 2 26798930 26798930 A - C2orf70 Frame_Shift_Del p.N79Tfs*4 0.21 TCGA-DD-AAW1-01 2 29473975 29473975 A T ALK Missense_Mutation p.Y734N 0.10 deleterious(0) probably_damaging(0.977) TCGA-DD-AAW1-01 2 64085046 64085046 A G UGP2 Silent p.K77K 0.06 TCGA-DD-AAW1-01 2 70142270 70142270 G T MXD1 5'UTR 0.42 TCGA-DD-AAW1-01 2 98543941 98543941 T A TMEM131 Missense_Mutation p.Q66L 0.41 deleterious(0) probably_damaging(0.953) TCGA-DD-AAW1-01 3 111313409 111313409 T A ZBED2 5'UTR 0.29 TCGA-DD-AAW1-01 3 113120468 113120468 T A WDR52 Missense_Mutation p.K430I 0.43 deleterious(0) probably_damaging(0.93) TCGA-DD-AAW1-01 3 141163168 141163168 T C ZBTB38 Silent p.N646N 0.40 TCGA-DD-AAW1-01 3 143691622 143691622 A G C3orf58 Missense_Mutation p.N150D 0.36 tolerated(0.61) benign(0.009) TCGA-DD-AAW1-01 3 143704424 143704424 C G C3orf58 Missense_Mutation p.L233V 0.34 deleterious(0.05) benign(0.406) TCGA-DD-AAW1-01 3 15084400 15084400 A G NR2C2 Missense_Mutation p.E578G 0.47 deleterious(0) probably_damaging(0.999) TCGA-DD-AAW1-01 3 180378364 180378364 T G CCDC39 Missense_Mutation p.K170N 0.38 deleterious(0) probably_damaging(0.984) TCGA-DD-AAW1-01 3 186572279 186572279 G A ADIPOQ Missense_Mutation p.S174N 0.47 deleterious(0) possibly_damaging(0.877) TCGA-DD-AAW1-01 3 194349215 194349215 T A TMEM44 Missense_Mutation p.Q54L 0.37 deleterious(0.02) benign(0.038) TCGA-DD-AAW1-01 3 41266098 41266098 A G CTNNB1 Missense_Mutation p.D32G 0.49 deleterious(0.01) possibly_damaging(0.452) TCGA-DD-AAW1-01 3 49721754 49721754 G A MST1 Missense_Mutation p.A670V 0.38 tolerated(0.16) probably_damaging(0.999) TCGA-DD-AAW1-01 3 97367160 97367160 T A EPHA6 Intron 0.48 TCGA-DD-AAW1-01 4 10522420 10522420 T C CLNK Missense_Mutation p.N256S 0.41 tolerated(0.51) benign(0) TCGA-DD-AAW1-01 4 122738770 122738770 A G CCNA2 3'UTR 0.34 TCGA-DD-AAW1-01 4 164392760 164392760 G T TKTL2 3'UTR 0.36 TCGA-DD-AAW1-01 4 53384 53384 T A ZNF595 Translation_Start_Site p.M1? 0.05 deleterious_low_confidence(0) benign(0.224) TCGA-DD-AAW1-01 4 69093439 69093439 A G TMPRSS11B 3'UTR 0.33 TCGA-DD-AAW1-01 4 84361091 84361091 T A HELQ Missense_Mutation p.Y578F 0.40 deleterious(0.03) benign(0.011) TCGA-DD-AAW1-01 4 85564293 85564293 C A CDS1 Silent p.I383I 0.34 TCGA-DD-AAW1-01 5 102360941 102360941 G T PAM Silent p.V864V 0.45 TCGA-DD-AAW1-01 5 140799184 140799184 C T PCDHGB7 Silent p.Y586Y 0.43 TCGA-DD-AAW1-01 5 52355710 52355710 C A ITGA2 Missense_Mutation p.L394M 0.44 tolerated(0.33) probably_damaging(0.963) TCGA-DD-AAW1-01 5 88056848 88056849 - T MEF2C Frame_Shift_Ins p.I138Nfs*2 0.33 TCGA-DD-AAW1-01 6 114378287 114378287 C T HS3ST5 3'UTR 0.58 TCGA-DD-AAW1-01 6 119147392 119147392 G A MCM9 Nonsense_Mutation p.Q627* 0.39 TCGA-DD-AAW1-01 6 135708953 135708953 T A AHI1 Intron 0.29 TCGA-DD-AAW1-01 6 136582573 136582573 C T BCLAF1 Missense_Mutation p.G863R 0.31 deleterious(0) probably_damaging(0.979) TCGA-DD-AAW1-01 6 13979923 13979924 - T RNF182 3'UTR 0.33 TCGA-DD-AAW1-01 6 16143347 16143347 A T MYLIP Silent p.I187I 0.43 TCGA-DD-AAW1-01 6 166581099 166581099 C A T 5'UTR 0.48 TCGA-DD-AAW1-01 6 31110818 31110818 C A CCHCR1 Missense_Mutation p.V805L 0.41 tolerated(0.25) benign(0.037) TCGA-DD-AAW1-01 6 64286611 64286611 C G PTP4A1 5'UTR 0.44 TCGA-DD-AAW1-01 6 70890392 70890392 C G COL19A1 Missense_Mutation p.P918A 0.39 tolerated(0.2) probably_damaging(0.955) TCGA-DD-AAW1-01 7 123346348 123346348 C T WASL Missense_Mutation p.R140H 0.36 deleterious(0.04) unknown(0) TCGA-DD-AAW1-01 7 127031567 127031569 GTG - ZNF800 In_Frame_Del p.H15del 0.33 TCGA-DD-AAW1-01 7 140223158 140223158 T A DENND2A Missense_Mutation p.R872W 0.41 deleterious(0) probably_damaging(1) TCGA-DD-AAW1-01 7 140273641 140273641 T A DENND2A Silent p.P471P 0.49 TCGA-DD-AAW1-01 7 141673266 141673266 G T TAS2R38 Missense_Mutation p.A75D 0.44 deleterious(0.04) probably_damaging(0.996) TCGA-DD-AAW1-01 7 28997728 28997728 C A AC005013.5 Intron 0.55 TCGA-DD-AAW1-01 7 50468300 50468300 G A IKZF1 Missense_Mutation p.G470E 0.30 deleterious(0) probably_damaging(1) TCGA-DD-AAW1-01 7 53104286 53104286 A T POM121L12 3'UTR 0.39 TCGA-DD-AAW1-01 7 56170565 56170565 G C CHCHD2 Missense_Mutation p.A147G 0.37 tolerated(0.05) possibly_damaging(0.617) TCGA-DD-AAW1-01 7 73790427 73790427 A T CLIP2 Nonsense_Mutation p.K566* 0.38 TCGA-DD-AAW1-01 7 82435068 82435068 T C PCLO Missense_Mutation p.S4957G 0.37 unknown(0) TCGA-DD-AAW1-01 7 87175239 87175239 T A ABCB1 Missense_Mutation p.K609N 0.34 tolerated(0.06) benign(0.006) TCGA-DD-AAW1-01 8 110376804 110376804 A T PKHD1L1 Silent p.T34T 0.69 TCGA-DD-AAW1-01 8 35648229 35648229 T A UNC5D 3'Flank 0.53 TCGA-DD-AAW1-01 8 54912504 54912504 C T TCEA1 Splice_Site p.X78_splice 0.32 TCGA-DD-AAW1-01 9 100080860 100080860 A T CCDC180 Missense_Mutation p.I403F 0.50 tolerated(0.1) benign(0.17) TCGA-DD-AAW1-01 9 125437433 125437434 CT - OR1L3 Frame_Shift_Del p.S10* 0.29 TCGA-DD-AAW1-01 9 134145689 134145689 T A FAM78A Intron 0.46 TCGA-DD-AAW1-01 9 84530849 84530849 T A SPATA31D5P RNA 0.42 TCGA-DD-AAW1-01 X 1508319 1508319 C T SLC25A6 Missense_Mutation p.R138K 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AAW1-01 X 154020561 154020561 C T MPP1 Splice_Site p.X35_splice 0.85 TCGA-DD-AAW1-01 X 155227274 155227274 A T IL9R 5'UTR 0.64 TCGA-DD-AAW1-01 X 70149624 70149624 A T SLC7A3 Missense_Mutation p.L75Q 0.92 deleterious(0) probably_damaging(0.979) TCGA-DD-AAW2-01 10 127456123 127456123 A G MMP21 Missense_Mutation p.I463T 0.38 deleterious(0.04) possibly_damaging(0.62) TCGA-DD-AAW2-01 10 128835982 128835982 G A DOCK1 Splice_Site p.X617_splice 0.40 TCGA-DD-AAW2-01 10 129914021 129914021 T A MKI67 Missense_Mutation p.E217D 0.50 tolerated(0.06) benign(0.232) TCGA-DD-AAW2-01 10 99219816 99219816 A G MMS19 Silent p.H881H 0.39 TCGA-DD-AAW2-01 11 103026197 103026197 T A DYNC2H1 Silent p.A1237A 0.41 TCGA-DD-AAW2-01 11 103156996 103156996 A G DYNC2H1 Missense_Mutation p.S3642G 0.38 benign(0) TCGA-DD-AAW2-01 11 113142501 113142501 C A NCAM1 Missense_Mutation p.P836T 0.48 deleterious(0) probably_damaging(0.944) TCGA-DD-AAW2-01 11 30953494 30953494 A C DCDC1 Missense_Mutation p.F907L 0.41 deleterious(0.02) benign(0.294) TCGA-DD-AAW2-01 11 56310580 56310580 C T OR5M11 Missense_Mutation p.D52N 0.48 tolerated(0.33) benign(0.011) TCGA-DD-AAW2-01 11 56468039 56468039 A G OR9G1 Missense_Mutation p.Y59C 0.24 deleterious(0) probably_damaging(1) TCGA-DD-AAW2-01 11 63257813 63257813 A G HRASLS5 Silent p.L57L 0.36 TCGA-DD-AAW2-01 11 65790380 65790380 C A CATSPER1 Missense_Mutation p.V457F 0.41 deleterious(0) probably_damaging(0.989) TCGA-DD-AAW2-01 11 721563 721563 A T EPS8L2 Splice_Site p.X257_splice 0.47 TCGA-DD-AAW2-01 11 77320592 77320592 A T AQP11 3'UTR 0.55 TCGA-DD-AAW2-01 11 77320602 77320602 A C AQP11 3'UTR 0.62 TCGA-DD-AAW2-01 11 85373569 85373569 A C CREBZF 3'UTR 0.36 TCGA-DD-AAW2-01 11 85722082 85722082 T G PICALM Missense_Mutation p.K252N 0.42 deleterious(0) possibly_damaging(0.782) TCGA-DD-AAW2-01 11 86086183 86086183 A G CCDC81 5'UTR 0.35 TCGA-DD-AAW2-01 12 121448715 121448715 T A C12orf43 Missense_Mutation p.E68V 0.37 tolerated(0.11) probably_damaging(0.988) TCGA-DD-AAW2-01 12 122656863 122656863 G T IL31 3'UTR 0.12 TCGA-DD-AAW2-01 12 1755095 1755095 G C WNT5B Missense_Mutation p.A253P 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-DD-AAW2-01 12 54917217 54917223 AAGAACA - NCKAP1L Frame_Shift_Del p.K640Rfs*40 0.36 TCGA-DD-AAW2-01 12 54969802 54969802 A T PDE1B Missense_Mutation p.T432S 0.38 tolerated(0.34) benign(0.148) TCGA-DD-AAW2-01 12 56510435 56510435 T - RPL41 5'UTR 0.26 TCGA-DD-AAW2-01 12 56720131 56720131 T A PAN2 Missense_Mutation p.Y442F 0.39 deleterious(0) probably_damaging(0.996) TCGA-DD-AAW2-01 12 59307787 59307787 G A LRIG3 Missense_Mutation p.S120L 0.31 tolerated(0.21) benign(0.006) TCGA-DD-AAW2-01 12 6859471 6859471 C A MLF2 Nonsense_Mutation p.E91* 0.46 TCGA-DD-AAW2-01 12 6859472 6859472 C G MLF2 Splice_Site p.X91_splice 0.44 TCGA-DD-AAW2-01 12 71978147 71978147 C A LGR5 Missense_Mutation p.S786Y 0.37 deleterious(0) probably_damaging(0.971) TCGA-DD-AAW2-01 12 9004828 9004828 C T A2ML1 Missense_Mutation p.S829L 0.08 deleterious(0.03) benign(0.429) TCGA-DD-AAW2-01 13 109644729 109644729 A - MYO16 Frame_Shift_Del p.Q770Rfs*28 0.27 TCGA-DD-AAW2-01 13 25255721 25255721 G A ATP12A Missense_Mutation p.V11M 0.05 deleterious_low_confidence(0) possibly_damaging(0.852) TCGA-DD-AAW2-01 13 32348772 32348772 T C RXFP2 Silent p.N171N 0.39 TCGA-DD-AAW2-01 13 70314528 70314528 G T KLHL1 Silent p.G600G 0.66 TCGA-DD-AAW2-01 14 22005097 22005097 T C SALL2 5'UTR 0.46 TCGA-DD-AAW2-01 14 60212848 60212848 T A RTN1 Missense_Mutation p.D198V 0.23 deleterious(0) probably_damaging(0.979) TCGA-DD-AAW2-01 14 79454468 79454468 A C NRXN3 Silent p.G709G 0.39 TCGA-DD-AAW2-01 14 93301968 93301968 C T GOLGA5 Silent p.Y670Y 0.42 TCGA-DD-AAW2-01 15 20649523 20649523 A T HERC2P3 RNA 0.19 TCGA-DD-AAW2-01 15 22368845 22368845 G C OR4M2 Missense_Mutation p.K90N 0.30 deleterious(0.01) probably_damaging(0.959) TCGA-DD-AAW2-01 15 22369093 22369093 A T OR4M2 Missense_Mutation p.E173V 0.31 tolerated(0.63) benign(0.134) TCGA-DD-AAW2-01 15 29346270 29346270 G A APBA2 Silent p.Q61Q 0.49 TCGA-DD-AAW2-01 15 30010667 30010667 T C TJP1 Missense_Mutation p.I1227V 0.44 tolerated_low_confidence(0.6) benign(0) TCGA-DD-AAW2-01 15 40675151 40675151 C T KNSTRN Nonsense_Mutation p.Q39* 0.40 TCGA-DD-AAW2-01 15 44876651 44876651 T C SPG11 Missense_Mutation p.I1743V 0.52 tolerated(0.27) benign(0.001) TCGA-DD-AAW2-01 15 45404147 45404147 T C DUOX2 Missense_Mutation p.H111R 0.47 deleterious(0.02) probably_damaging(0.999) TCGA-DD-AAW2-01 15 79277244 79277244 A T RASGRF1 Intron 0.50 TCGA-DD-AAW2-01 15 91181991 91181991 C T CRTC3 Missense_Mutation p.P498S 0.44 tolerated(0.3) benign(0.011) TCGA-DD-AAW2-01 16 19132550 19132550 G T ITPRIPL2 3'UTR 0.36 TCGA-DD-AAW2-01 16 2507153 2507153 A T CCNF 3'UTR 0.16 TCGA-DD-AAW2-01 16 28986482 28986482 T C SPNS1 Missense_Mutation p.S4P 0.44 tolerated_low_confidence(0.28) benign(0) TCGA-DD-AAW2-01 16 29826044 29826044 T C PRRT2 3'UTR 0.60 TCGA-DD-AAW2-01 16 3647563 3647563 C A SLX4 Silent p.T500T 0.47 TCGA-DD-AAW2-01 16 68894026 68894026 C T TANGO6 Missense_Mutation p.L112F 0.42 tolerated(0.08) probably_damaging(0.983) TCGA-DD-AAW2-01 16 69752318 69752318 A C NQO1 Missense_Mutation p.Y43D 0.47 deleterious(0) probably_damaging(1) TCGA-DD-AAW2-01 16 70190675 70190675 G A PDPR Missense_Mutation p.A845T 0.14 deleterious(0) probably_damaging(0.97) TCGA-DD-AAW2-01 16 74752917 74752917 A T FA2H Missense_Mutation p.L252Q 0.38 deleterious(0) probably_damaging(0.987) TCGA-DD-AAW2-01 16 84328534 84328534 C G WFDC1 5'UTR 0.42 TCGA-DD-AAW2-01 17 34803368 34803368 C T TBC1D3G Missense_Mutation p.G151R 0.12 tolerated(1) benign(0.006) TCGA-DD-AAW2-01 17 48435884 48435884 A T XYLT2 Missense_Mutation p.K753I 0.35 deleterious(0.03) possibly_damaging(0.878) TCGA-DD-AAW2-01 17 48435895 48435895 A G XYLT2 Missense_Mutation p.R757G 0.32 tolerated(0.11) benign(0.022) TCGA-DD-AAW2-01 17 48457826 48457826 T C EME1 Silent p.V513V 0.41 TCGA-DD-AAW2-01 17 57351222 57351222 A T GDPD1 3'UTR 0.36 TCGA-DD-AAW2-01 17 72838940 72838940 C G GRIN2C Silent p.S1112S 0.43 TCGA-DD-AAW2-01 17 7324364 7324364 T A SPEM1 Missense_Mutation p.C124S 0.51 tolerated(0.58) benign(0.015) TCGA-DD-AAW2-01 17 78797057 78797057 C - RPTOR Intron 0.25 TCGA-DD-AAW2-01 17 80529707 80529707 A C FOXK2 Missense_Mutation p.K290N 0.34 deleterious(0) probably_damaging(0.992) TCGA-DD-AAW2-01 18 21053404 21053404 A G RIOK3 Missense_Mutation p.E276G 0.44 tolerated(0.39) benign(0) TCGA-DD-AAW2-01 18 32418754 32418754 T G DTNA Intron 0.40 TCGA-DD-AAW2-01 18 32834231 32834231 C A ZSCAN30 Missense_Mutation p.R223L 0.41 tolerated(0.32) benign(0) TCGA-DD-AAW2-01 18 9886755 9886755 A C TXNDC2 Silent p.S93S 0.07 TCGA-DD-AAW2-01 19 35231867 35231867 A G ZNF181 Missense_Mutation p.K194R 0.46 tolerated(0.14) probably_damaging(0.952) TCGA-DD-AAW2-01 19 41725279 41725279 T A AXL 5'UTR 0.43 TCGA-DD-AAW2-01 19 46812565 46812565 C A HIF3A Missense_Mutation p.A240D 0.39 deleterious(0) benign(0.342) TCGA-DD-AAW2-01 19 4910899 4910899 T C UHRF1 RNA 0.43 TCGA-DD-AAW2-01 19 49166509 49166509 G A NTN5 Intron 0.40 TCGA-DD-AAW2-01 19 5456638 5456638 A T ZNRF4 Missense_Mutation p.H379L 0.42 tolerated(0.07) benign(0.025) TCGA-DD-AAW2-01 19 54822602 54822602 C G LILRA5 Intron 0.11 TCGA-DD-AAW2-01 19 6213406 6213406 T C MLLT1 Missense_Mutation p.E498G 0.40 deleterious(0.01) benign(0.403) TCGA-DD-AAW2-01 19 9083038 9083038 G A MUC16 Missense_Mutation p.S2926F 0.46 unknown(0) TCGA-DD-AAW2-01 1 108679374 108679374 T A SLC25A24 Missense_Mutation p.R445S 0.48 deleterious(0) possibly_damaging(0.562) TCGA-DD-AAW2-01 1 145354337 145354337 G C NBPF10 Missense_Mutation p.L2755F 0.17 probably_damaging(0.995) TCGA-DD-AAW2-01 1 152080354 152080354 C A TCHH Missense_Mutation p.R1780L 0.63 unknown(0) TCGA-DD-AAW2-01 1 153740305 153740305 T A INTS3 Splice_Site p.X748_splice 0.30 TCGA-DD-AAW2-01 1 154942683 154942683 A G SHC1 Missense_Mutation p.L107P 0.60 tolerated(0.32) benign(0.007) TCGA-DD-AAW2-01 1 155015937 155015937 G A DCST1 Missense_Mutation p.G375E 0.33 tolerated(0.09) benign(0.021) TCGA-DD-AAW2-01 1 155023871 155023871 G T ADAM15 Silent p.L3L 0.52 TCGA-DD-AAW2-01 1 183190045 183190045 C A LAMC2 Missense_Mutation p.R197S 0.27 tolerated(0.78) benign(0.002) TCGA-DD-AAW2-01 1 216019200 216019200 G A USH2A Silent p.N3007N 0.30 TCGA-DD-AAW2-01 1 228346869 228346869 A T GJC2 3'UTR 0.28 TCGA-DD-AAW2-01 1 228347469 228347469 C T GJC2 3'UTR 0.09 TCGA-DD-AAW2-01 1 235605132 235605132 A G TBCE Missense_Mutation p.Y425C 0.31 deleterious(0) probably_damaging(0.981) TCGA-DD-AAW2-01 1 23763700 23763700 T A ASAP3 Missense_Mutation p.H422L 0.36 tolerated(0.11) benign(0) TCGA-DD-AAW2-01 1 47048993 47048993 T G MKNK1 Missense_Mutation p.S15R 0.36 deleterious(0.04) benign(0.048) TCGA-DD-AAW2-01 1 47075833 47075833 G T MOB3C Silent p.I206I 0.44 TCGA-DD-AAW2-01 1 48713094 48713094 A G SLC5A9 Missense_Mutation p.K667R 0.44 tolerated(0.19) benign(0.002) TCGA-DD-AAW2-01 20 2635441 2635441 G A NOP56 Silent p.L139L 0.39 TCGA-DD-AAW2-01 20 31189358 31189358 T A RP11-410N8.4 5'UTR 0.46 TCGA-DD-AAW2-01 21 11026795 11026795 T G BAGE2 RNA 0.07 TCGA-DD-AAW2-01 21 41034557 41034557 G C B3GALT5 3'UTR 0.44 TCGA-DD-AAW2-01 21 45107430 45107430 G A RRP1B Missense_Mutation p.S392N 0.54 tolerated(0.16) benign(0.006) TCGA-DD-AAW2-01 21 45707002 45707002 G T AIRE Missense_Mutation p.G150V 0.27 tolerated(0.21) benign(0.02) TCGA-DD-AAW2-01 22 20132876 20132876 A T ZDHHC8 Intron 0.37 TCGA-DD-AAW2-01 22 24036434 24036434 C T RGL4 Intron 0.49 TCGA-DD-AAW2-01 22 25155853 25155853 C T PIWIL3 Missense_Mutation p.G69E 0.50 tolerated(1) benign(0.003) TCGA-DD-AAW2-01 22 39817945 39817945 A T TAB1 Missense_Mutation p.E297V 0.43 deleterious(0.04) probably_damaging(1) TCGA-DD-AAW2-01 22 44893467 44893467 C A LDOC1L 5'UTR 0.49 TCGA-DD-AAW2-01 2 112601156 112601156 T C ANAPC1 Missense_Mutation p.I625V 0.39 tolerated(0.28) benign(0.001) TCGA-DD-AAW2-01 2 15737583 15737583 A C DDX1 Missense_Mutation p.T83P 0.38 tolerated(0.28) benign(0.005) TCGA-DD-AAW2-01 2 163139081 163139081 C A IFIH1 Silent p.L367L 0.42 TCGA-DD-AAW2-01 2 169952088 169952088 G T DHRS9 Silent p.V257V 0.39 TCGA-DD-AAW2-01 2 179639038 179639038 C T TTN Missense_Mutation p.R2318H 0.51 TCGA-DD-AAW2-01 2 187627077 187627077 C T FAM171B Missense_Mutation p.P670S 0.49 deleterious(0) probably_damaging(1) TCGA-DD-AAW2-01 2 219330793 219330794 - A USP37 Frame_Shift_Ins p.M802Ifs*4 0.24 TCGA-DD-AAW2-01 2 234669658 234669658 T A UGT1A8 Intron 0.39 TCGA-DD-AAW2-01 2 234669659 234669659 G C UGT1A8 Intron 0.39 TCGA-DD-AAW2-01 2 237489983 237489983 C T ACKR3 Missense_Mutation p.A292V 0.38 tolerated(0.3) benign(0.006) TCGA-DD-AAW2-01 2 238271932 238271932 G T COL6A3 Missense_Mutation p.N2009K 0.41 possibly_damaging(0.829) TCGA-DD-AAW2-01 2 36749317 36749317 A T CRIM1 Silent p.A763A 0.40 TCGA-DD-AAW2-01 2 39239378 39239378 G A SOS1 Missense_Mutation p.T760I 0.07 deleterious(0) benign(0.001) TCGA-DD-AAW2-01 2 48027295 48027295 A G MSH6 Missense_Mutation p.I725V 0.41 tolerated(0.62) benign(0) TCGA-DD-AAW2-01 2 5840844 5840844 C T SOX11 3'UTR 0.40 TCGA-DD-AAW2-01 2 61391910 61391910 A G C2orf74 3'UTR 0.50 TCGA-DD-AAW2-01 2 90044223 90044223 C A IGKV2D-24 Missense_Mutation p.S48R 0.40 deleterious(0.01) benign(0.208) TCGA-DD-AAW2-01 2 90044224 90044224 C A IGKV2D-24 Missense_Mutation p.L49I 0.41 tolerated(0.14) benign(0.194) TCGA-DD-AAW2-01 2 97637903 97637903 T A FAM178B Missense_Mutation p.Q100L 0.41 deleterious_low_confidence(0) possibly_damaging(0.754) TCGA-DD-AAW2-01 2 99217050 99217050 T C COA5 3'UTR 0.42 TCGA-DD-AAW2-01 3 101052005 101052005 T G SENP7 Intron 0.40 TCGA-DD-AAW2-01 3 10157342 10157342 A T BRK1 5'UTR 0.47 TCGA-DD-AAW2-01 3 112357332 112357332 C A CCDC80 Missense_Mutation p.G474V 0.44 tolerated(0.09) probably_damaging(0.916) TCGA-DD-AAW2-01 3 125833489 125833489 T A ALDH1L1 Missense_Mutation p.S675C 0.43 deleterious(0) possibly_damaging(0.858) TCGA-DD-AAW2-01 3 128598473 128598475 TGT C ACAD9 5'UTR 0.49 TCGA-DD-AAW2-01 3 133648043 133648043 G T C3orf36 5'UTR 0.46 TCGA-DD-AAW2-01 3 41266124 41266124 A G CTNNB1 Missense_Mutation p.T41A 0.58 deleterious(0) possibly_damaging(0.844) TCGA-DD-AAW2-01 3 41266165 41266165 A C CTNNB1 Missense_Mutation p.E54D 0.57 tolerated(1) benign(0.001) TCGA-DD-AAW2-01 3 45872441 45872441 T C LZTFL1 Silent p.A188A 0.26 TCGA-DD-AAW2-01 3 4747976 4747976 C A ITPR1 Missense_Mutation p.R1580S 0.39 tolerated(0.09) probably_damaging(0.994) TCGA-DD-AAW2-01 3 50396097 50396097 A C TMEM115 Missense_Mutation p.V133G 0.60 deleterious(0) benign(0.161) TCGA-DD-AAW2-01 3 52724657 52724657 A C GNL3 Missense_Mutation p.K197N 0.31 tolerated(0.27) benign(0.031) TCGA-DD-AAW2-01 3 57447341 57447341 G A DNAH12 Missense_Mutation p.R848C 0.21 deleterious(0) possibly_damaging(0.898) TCGA-DD-AAW2-01 3 64608126 64608126 T G ADAMTS9 Silent p.T842T 0.40 TCGA-DD-AAW2-01 4 10079384 10079384 C A WDR1 Missense_Mutation p.G521V 0.39 tolerated(0.5) benign(0.19) TCGA-DD-AAW2-01 4 120079231 120079231 T A MYOZ2 Missense_Mutation p.S101T 0.42 tolerated(0.51) benign(0.014) TCGA-DD-AAW2-01 4 187524333 187524333 T G FAT1 Missense_Mutation p.K3783Q 0.39 benign(0.004) TCGA-DD-AAW2-01 4 4426917 4426917 T C STX18 Silent p.E245E 0.05 TCGA-DD-AAW2-01 4 55139876 55139876 G A PDGFRA Missense_Mutation p.E513K 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-DD-AAW2-01 4 74275115 74275115 C G ALB Missense_Mutation p.P176A 0.43 deleterious(0) possibly_damaging(0.652) TCGA-DD-AAW2-01 4 81124806 81124806 C T PRDM8 3'UTR 0.38 TCGA-DD-AAW2-01 4 8307982 8307982 C T HTRA3 3'UTR 0.30 TCGA-DD-AAW2-01 5 135651445 135651445 A C TRPC7 Missense_Mutation p.M268R 0.08 tolerated(0.54) benign(0.01) TCGA-DD-AAW2-01 5 140480412 140480412 C T PCDHB3 Missense_Mutation p.A60V 0.24 tolerated_low_confidence(0.11) benign(0.093) TCGA-DD-AAW2-01 5 143539947 143539947 T A YIPF5 3'UTR 0.60 TCGA-DD-AAW2-01 5 172661932 172661932 T A NKX2-5 Missense_Mutation p.K52M 0.60 deleterious(0) probably_damaging(0.984) TCGA-DD-AAW2-01 5 35086436 35086436 A G PRLR Missense_Mutation p.L26S 0.31 tolerated(1) benign(0) TCGA-DD-AAW2-01 5 49699226 49699226 C T EMB Silent p.K221K 0.28 TCGA-DD-AAW2-01 5 70308645 70308645 T A NAIP Missense_Mutation p.Q33L 0.60 deleterious(0.02) benign(0.065) TCGA-DD-AAW2-01 5 83680288 83680288 C A EDIL3 5'UTR 0.58 TCGA-DD-AAW2-01 5 98229231 98229231 T C CHD1 Missense_Mutation p.Y627C 0.06 deleterious(0) probably_damaging(1) TCGA-DD-AAW2-01 5 99922152 99922152 C T FAM174A 3'UTR 0.29 TCGA-DD-AAW2-01 6 26217396 26217396 A T HIST1H2AE Missense_Mutation p.E65V 0.76 deleterious_low_confidence(0) possibly_damaging(0.693) TCGA-DD-AAW2-01 6 32847073 32847073 C T PPP1R2P1 RNA 0.58 TCGA-DD-AAW2-01 6 43222808 43222808 C T TTBK1 Nonsense_Mutation p.R200* 0.17 TCGA-DD-AAW2-01 6 5109701 5109701 T C LYRM4 Missense_Mutation p.T78A 0.13 tolerated(0.56) benign(0.004) TCGA-DD-AAW2-01 6 83819950 83819950 A G DOPEY1 Missense_Mutation p.I200V 0.75 tolerated(0.96) benign(0.019) TCGA-DD-AAW2-01 6 99284456 99284456 C A POU3F2 3'UTR 0.18 TCGA-DD-AAW2-01 7 100370952 100370952 C A ZAN Missense_Mutation p.P1824T 0.26 unknown(0) TCGA-DD-AAW2-01 7 122338044 122338044 A G RNF133 Missense_Mutation p.V310A 0.27 tolerated(0.11) benign(0.001) TCGA-DD-AAW2-01 7 127892214 127892214 C T LEP Missense_Mutation p.T48M 0.30 tolerated(0.3) benign(0.041) TCGA-DD-AAW2-01 7 135612931 135612931 A G AC015987.2 3'UTR 0.04 TCGA-DD-AAW2-01 7 150695672 150695672 C A NOS3 Missense_Mutation p.D240E 0.32 deleterious(0.03) probably_damaging(0.98) TCGA-DD-AAW2-01 7 158718939 158718939 G T WDR60 Silent p.T773T 0.30 TCGA-DD-AAW2-01 7 22179655 22179655 C T RAPGEF5 Silent p.S602S 0.26 TCGA-DD-AAW2-01 7 40133994 40133994 A G CDK13 Silent p.E1318E 0.26 TCGA-DD-AAW2-01 7 51095425 51095425 T C COBL Missense_Mutation p.K1123R 0.19 tolerated(0.13) benign(0.252) TCGA-DD-AAW2-01 7 5540596 5540605 GCGCGGTCGG - FBXL18 Frame_Shift_Del p.A432Gfs*45 0.30 TCGA-DD-AAW2-01 7 77789458 77789458 C G MAGI2 Missense_Mutation p.G910A 0.31 tolerated(0.51) benign(0.012) TCGA-DD-AAW2-01 7 92210842 92210842 G A FAM133B Silent p.L34L 0.31 TCGA-DD-AAW2-01 7 92734707 92734707 A G SAMD9 Missense_Mutation p.I235T 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AAW2-01 8 79514160 79514160 T A PKIA 3'UTR 0.13 TCGA-DD-AAW2-01 8 87683234 87683234 G A CNGB3 Missense_Mutation p.A144V 0.71 tolerated(0.07) benign(0.032) TCGA-DD-AAW2-01 9 113205798 113205798 A T SVEP1 Intron 0.43 TCGA-DD-AAW2-01 9 141008886 141008886 A G CACNA1B Missense_Mutation p.K1865E 0.44 deleterious(0) probably_damaging(0.973) TCGA-DD-AAW2-01 9 20363312 20363312 T A MLLT3 Intron 0.64 TCGA-DD-AAW2-01 9 37708463 37708463 A C FRMPD1 Missense_Mutation p.E109D 0.41 tolerated(0.44) benign(0.075) TCGA-DD-AAW2-01 9 43816712 43816712 A T CNTNAP3B Missense_Mutation p.H273L 0.18 deleterious(0) probably_damaging(1) TCGA-DD-AAW2-01 9 97367847 97367847 A T FBP1 Silent p.A239A 0.32 TCGA-DD-AAW2-01 X 115590262 115590262 G T SLC6A14 3'UTR 0.94 TCGA-DD-AAW2-01 X 15609834 15609834 A G ACE2 Splice_Site p.X195_splice 0.90 TCGA-DD-AAW2-01 X 15841369 15841369 A T ZRSR2 3'UTR 0.44 TCGA-DD-AAW2-01 X 53230776 53230776 T C KDM5C Missense_Mutation p.M673V 0.04 deleterious(0) benign(0.039) TCGA-DD-AAW2-01 X 69719893 69719893 A T DLG3 Silent p.A713A 0.94 TCGA-DD-AAW2-01 X 71358304 71358304 C T NHSL2 Silent p.S302S 0.93 TCGA-DD-AAW3-01 10 101967049 101967049 C T CHUK Missense_Mutation p.S390N 0.22 tolerated(0.08) probably_damaging(0.998) TCGA-DD-AAW3-01 10 107022244 107022244 T C SORCS3 Missense_Mutation p.V1200A 0.46 tolerated(0.35) benign(0.015) TCGA-DD-AAW3-01 10 119036806 119036806 T C SLC18A2 3'UTR 0.66 TCGA-DD-AAW3-01 10 120879889 120879890 - A FAM45A Frame_Shift_Ins p.H174Tfs*50 0.29 TCGA-DD-AAW3-01 10 43691966 43691966 C T RASGEF1A Missense_Mutation p.G460D 0.34 deleterious(0.04) benign(0.296) TCGA-DD-AAW3-01 10 64952883 64952883 T C JMJD1C Missense_Mutation p.N1964S 0.38 tolerated(0.14) benign(0.033) TCGA-DD-AAW3-01 10 72536989 72536989 A G TBATA Missense_Mutation p.S204P 0.32 deleterious(0.04) benign(0.073) TCGA-DD-AAW3-01 10 89419664 89419664 C T PAPSS2 5'UTR 0.34 TCGA-DD-AAW3-01 10 89685287 89685287 A T PTEN Missense_Mutation p.H61L 0.41 deleterious(0) probably_damaging(0.986) TCGA-DD-AAW3-01 10 96829225 96829225 G C CYP2C8 5'UTR 0.55 TCGA-DD-AAW3-01 11 111941928 111941928 C A PIH1D2 Missense_Mutation p.Q127H 0.52 tolerated(0.48) benign(0.082) TCGA-DD-AAW3-01 11 128709552 128709552 T C KCNJ1 Missense_Mutation p.N215S 0.43 deleterious(0) probably_damaging(0.992) TCGA-DD-AAW3-01 11 14512195 14512195 A G COPB1 Silent p.P174P 0.35 TCGA-DD-AAW3-01 11 55872580 55872580 C T OR8H2 Missense_Mutation p.S21F 0.40 deleterious(0.03) benign(0.078) TCGA-DD-AAW3-01 11 56019703 56019703 C T OR5T3 Missense_Mutation p.L10F 0.34 deleterious_low_confidence(0.02) benign(0.005) TCGA-DD-AAW3-01 11 62293842 62293842 T C AHNAK Missense_Mutation p.I2683V 0.41 benign(0.009) TCGA-DD-AAW3-01 11 6232884 6232884 G T FAM160A2 Missense_Mutation p.A938D 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AAW3-01 11 6942232 6942232 A C OR2D3 5'UTR 0.52 TCGA-DD-AAW3-01 12 110370863 110370863 G C GIT2 Missense_Mutation p.Q734E 0.42 deleterious(0) possibly_damaging(0.892) TCGA-DD-AAW3-01 12 130832690 130832690 T C PIWIL1 Silent p.Y232Y 0.43 TCGA-DD-AAW3-01 12 52699514 52699514 A T KRT86 Missense_Mutation p.N323I 0.38 deleterious(0.01) possibly_damaging(0.867) TCGA-DD-AAW3-01 12 53646678 53646678 A G MFSD5 Missense_Mutation p.E127G 0.48 deleterious(0.03) benign(0.157) TCGA-DD-AAW3-01 12 56429110 56429110 G A IKZF4 Missense_Mutation p.G585S 0.32 deleterious(0.01) benign(0.243) TCGA-DD-AAW3-01 12 58015473 58015473 A G SLC26A10 Missense_Mutation p.T186A 0.42 deleterious(0) probably_damaging(0.998) TCGA-DD-AAW3-01 12 6128399 6128399 C A VWF Silent p.R1395R 0.33 TCGA-DD-AAW3-01 12 6952848 6952848 G T GNB3 Silent p.S161S 0.41 TCGA-DD-AAW3-01 12 7288407 7288407 T A CLSTN3 Silent p.I200I 0.48 TCGA-DD-AAW3-01 13 111368119 111368119 G T ING1 Missense_Mutation p.R110L 0.39 tolerated_low_confidence(0.12) benign(0) TCGA-DD-AAW3-01 13 24465912 24465912 C A C1QTNF9B Missense_Mutation p.G173V 0.43 deleterious(0) probably_damaging(1) TCGA-DD-AAW3-01 13 25367348 25367348 T C RNF17 Silent p.D368D 0.43 TCGA-DD-AAW3-01 13 31035522 31035522 T A HMGB1 Missense_Mutation p.D207V 0.49 tolerated_low_confidence(0.21) unknown(0) TCGA-DD-AAW3-01 13 44411411 44411411 C A CCDC122 3'UTR 0.41 TCGA-DD-AAW3-01 13 48807572 48807572 G T ITM2B Missense_Mutation p.A26S 0.41 tolerated(0.22) benign(0.146) TCGA-DD-AAW3-01 14 23826232 23826232 A T EFS 3'UTR 0.30 TCGA-DD-AAW3-01 14 24568418 24568418 T C PCK2 Silent p.D275D 0.40 TCGA-DD-AAW3-01 14 24572747 24572747 C T PCK2 Silent p.A499A 0.46 TCGA-DD-AAW3-01 15 25928550 25928550 G T ATP10A Missense_Mutation p.F1125L 0.44 tolerated(0.26) benign(0.001) TCGA-DD-AAW3-01 15 34635263 34635263 C A NOP10 Missense_Mutation p.Q4H 0.45 deleterious(0.04) possibly_damaging(0.839) TCGA-DD-AAW3-01 15 44859685 44859685 T C SPG11 Missense_Mutation p.I2231V 0.49 deleterious(0) benign(0.274) TCGA-DD-AAW3-01 15 55474114 55474114 T C RSL24D1 3'UTR 0.47 TCGA-DD-AAW3-01 15 74427119 74427119 A G ISLR2 Missense_Mutation p.E675G 0.05 tolerated(0.3) benign(0.326) TCGA-DD-AAW3-01 15 90764627 90764627 C T SEMA4B Silent p.S208S 0.37 TCGA-DD-AAW3-01 16 1816360 1816360 C T MAPK8IP3 Silent p.H922H 0.10 TCGA-DD-AAW3-01 16 85132897 85132897 G A FAM92B Missense_Mutation p.A270V 0.46 tolerated_low_confidence(0.11) benign(0.003) TCGA-DD-AAW3-01 17 15930009 15930023 GCACAGAGGTAGGTA - TTC19 Splice_Site p.X330_splice 0.30 TCGA-DD-AAW3-01 17 29061786 29061786 G A CTD-2349P21.5 3'Flank 0.33 TCGA-DD-AAW3-01 17 42635670 42635675 TCAAGG - FZD2 In_Frame_Del p.K206_V207del 0.33 TCGA-DD-AAW3-01 17 9729508 9729508 G A GLP2R Missense_Mutation p.C43Y 0.24 tolerated_low_confidence(1) benign(0.002) TCGA-DD-AAW3-01 19 11728607 11728607 G A ZNF627 Missense_Mutation p.R430Q 0.08 tolerated(0.29) benign(0.2) TCGA-DD-AAW3-01 19 12154963 12154963 G A ZNF878 Missense_Mutation p.T418I 0.44 deleterious(0.01) probably_damaging(0.955) TCGA-DD-AAW3-01 19 30099579 30099579 C T POP4 Missense_Mutation p.A8V 0.42 tolerated(0.05) benign(0.075) TCGA-DD-AAW3-01 19 49259647 49259647 G A FGF21 Missense_Mutation p.D52N 0.38 tolerated(0.19) probably_damaging(0.932) TCGA-DD-AAW3-01 19 49506571 49506571 G A RUVBL2 Missense_Mutation p.D35N 0.45 tolerated(0.1) possibly_damaging(0.536) TCGA-DD-AAW3-01 19 519025 519025 G A TPGS1 Missense_Mutation p.E159K 0.50 tolerated(0.05) benign(0.154) TCGA-DD-AAW3-01 19 52130954 52130954 C T SIGLEC5 Missense_Mutation p.G348D 0.43 tolerated(0.08) benign(0.202) TCGA-DD-AAW3-01 19 8661267 8661267 G A ADAMTS10 Missense_Mutation p.R372C 0.12 deleterious(0.03) probably_damaging(0.939) TCGA-DD-AAW3-01 1 114680598 114680598 G A SYT6 Missense_Mutation p.A112V 0.48 tolerated(0.49) benign(0.001) TCGA-DD-AAW3-01 1 115222318 115222318 G A AMPD1 Missense_Mutation p.T293I 0.46 deleterious(0) benign(0.183) TCGA-DD-AAW3-01 1 120438999 120438999 C T ADAM30 5'UTR 0.53 TCGA-DD-AAW3-01 1 12123646 12123646 G T TNFRSF8 5'UTR 0.37 TCGA-DD-AAW3-01 1 152283840 152283840 T A FLG Silent p.G1174G 0.55 TCGA-DD-AAW3-01 1 156303356 156303356 T A CCT3 Missense_Mutation p.T96S 0.62 deleterious(0.01) possibly_damaging(0.755) TCGA-DD-AAW3-01 1 156737670 156737670 G C PRCC Missense_Mutation p.G36A 0.25 deleterious(0.03) unknown(0) TCGA-DD-AAW3-01 1 173556888 173556888 A T SLC9C2 Missense_Mutation p.W147R 0.48 deleterious(0) probably_damaging(0.999) TCGA-DD-AAW3-01 1 196398776 196398776 A T KCNT2 Silent p.P250P 0.60 TCGA-DD-AAW3-01 1 237804207 237804207 G T RYR2 Nonsense_Mutation p.E2376* 0.67 TCGA-DD-AAW3-01 1 247921219 247921219 C T OR1C1 Missense_Mutation p.A164T 0.65 tolerated(0.28) benign(0.009) TCGA-DD-AAW3-01 1 248084934 248084934 C T OR2T8 Silent p.L205L 0.75 TCGA-DD-AAW3-01 1 248512967 248512967 G A OR14C36 Silent p.V297V 0.21 TCGA-DD-AAW3-01 1 55158176 55158176 G A MROH7 Missense_Mutation p.G931S 0.42 deleterious(0.01) probably_damaging(1) TCGA-DD-AAW3-01 1 55158177 55158177 G C MROH7 Missense_Mutation p.G931A 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-DD-AAW3-01 1 60299130 60299130 C T HOOK1 Silent p.T109T 0.14 TCGA-DD-AAW3-01 1 97250726 97250726 C T PTBP2 Nonsense_Mutation p.R274* 0.35 TCGA-DD-AAW3-01 1 9778944 9778944 C T PIK3CD Missense_Mutation p.R405C 0.35 deleterious(0) probably_damaging(0.982) TCGA-DD-AAW3-01 20 23432513 23432513 C A CST11 Missense_Mutation p.W91C 0.51 deleterious(0) benign(0.004) TCGA-DD-AAW3-01 20 34778570 34778570 A C EPB41L1 Missense_Mutation p.K384T 0.08 deleterious(0) probably_damaging(0.999) TCGA-DD-AAW3-01 20 3674951 3674951 A T SIGLEC1 Missense_Mutation p.M1058K 0.49 tolerated(0.43) benign(0.071) TCGA-DD-AAW3-01 20 43964503 43964503 C T SDC4 Missense_Mutation p.G40R 0.38 deleterious(0) probably_damaging(1) TCGA-DD-AAW3-01 21 34107136 34107136 T G PAXBP1 3'UTR 0.63 TCGA-DD-AAW3-01 2 108443442 108443442 G T RGPD4 5'UTR 0.45 TCGA-DD-AAW3-01 2 112545882 112545882 T C ANAPC1 Silent p.T1576T 0.09 TCGA-DD-AAW3-01 2 131805744 131805744 C T FAM168B 3'UTR 0.52 TCGA-DD-AAW3-01 2 141459290 141459290 C T LRP1B Missense_Mutation p.G2143R 0.40 probably_damaging(0.953) TCGA-DD-AAW3-01 2 15758310 15758310 G T DDX1 Silent p.G374G 0.39 TCGA-DD-AAW3-01 2 160231234 160231234 C A BAZ2B Nonsense_Mutation p.E1346* 0.25 TCGA-DD-AAW3-01 2 170101205 170101205 C A LRP2 Missense_Mutation p.C1143F 0.37 probably_damaging(0.992) TCGA-DD-AAW3-01 2 170428597 170428597 A C FASTKD1 5'UTR 0.43 TCGA-DD-AAW3-01 2 179427083 179427083 A G TTN Silent p.L27926L 0.47 TCGA-DD-AAW3-01 2 202698631 202698631 A G CDK15 Missense_Mutation p.R223G 0.39 deleterious(0) probably_damaging(1) TCGA-DD-AAW3-01 2 203630340 203630341 - A FAM117B Frame_Shift_Ins p.M542Nfs*44 0.30 TCGA-DD-AAW3-01 2 220161748 220161748 T C PTPRN Missense_Mutation p.E732G 0.08 deleterious(0.01) benign(0.013) TCGA-DD-AAW3-01 2 26702479 26702479 C T OTOF Missense_Mutation p.R652Q 0.37 tolerated(0.38) benign(0.03) TCGA-DD-AAW3-01 2 47278963 47278963 T A TTC7A Missense_Mutation p.L699Q 0.37 tolerated(0.34) benign(0.045) TCGA-DD-AAW3-01 2 97274685 97274685 T C KANSL3 Silent p.R500R 0.06 TCGA-DD-AAW3-01 2 97274687 97274687 T C KANSL3 Missense_Mutation p.R500G 0.06 deleterious(0.02) possibly_damaging(0.79) TCGA-DD-AAW3-01 2 99172251 99172251 G T INPP4A Missense_Mutation p.C606F 0.08 tolerated(0.12) benign(0.001) TCGA-DD-AAW3-01 3 105404274 105404274 T C CBLB Silent p.K697K 0.45 TCGA-DD-AAW3-01 3 108819341 108819341 G A MORC1 Silent p.D79D 0.43 TCGA-DD-AAW3-01 3 120115689 120115689 T C FSTL1 3'UTR 0.56 TCGA-DD-AAW3-01 3 129696007 129696007 G A TRH Missense_Mutation p.R226Q 0.32 deleterious(0.04) benign(0.037) TCGA-DD-AAW3-01 3 189584586 189584586 G A TP63 Silent p.Q294Q 0.36 TCGA-DD-AAW3-01 3 33195306 33195306 G A SUSD5 Missense_Mutation p.P273L 0.77 tolerated(0.14) benign(0.059) TCGA-DD-AAW3-01 3 41266136 41266136 T C CTNNB1 Missense_Mutation p.S45P 0.84 deleterious(0) probably_damaging(0.939) TCGA-DD-AAW3-01 3 52720072 52720072 G A GNL3 5'UTR 0.75 TCGA-DD-AAW3-01 3 52877737 52877737 G A TMEM110 Silent p.N206N 0.81 TCGA-DD-AAW3-01 4 118005493 118005493 C A TRAM1L1 Nonsense_Mutation p.E353* 0.38 TCGA-DD-AAW3-01 4 138451631 138451631 C A PCDH18 Missense_Mutation p.V538L 0.40 tolerated(0.46) possibly_damaging(0.718) TCGA-DD-AAW3-01 4 186111951 186111951 C A KIAA1430 Missense_Mutation p.D134Y 0.48 deleterious(0) probably_damaging(0.956) TCGA-DD-AAW3-01 4 79832987 79832987 A G BMP2K Missense_Mutation p.N1096D 0.03 deleterious_low_confidence(0.03) unknown(0) TCGA-DD-AAW3-01 5 54581616 54581616 T C DHX29 Silent p.K380K 0.34 TCGA-DD-AAW3-01 5 68492921 68492921 T - CENPH Frame_Shift_Del p.S120Afs*11 0.28 TCGA-DD-AAW3-01 5 75886316 75886316 G A IQGAP2 Missense_Mutation p.A242T 0.39 deleterious(0.01) probably_damaging(0.947) TCGA-DD-AAW3-01 6 154360440 154360440 G T OPRM1 Missense_Mutation p.A49S 0.77 deleterious_low_confidence(0.04) benign(0.002) TCGA-DD-AAW3-01 6 40998166 40998166 C T UNC5CL Missense_Mutation p.R432K 0.11 tolerated(0.41) benign(0.057) TCGA-DD-AAW3-01 6 53364926 53364926 G T GCLC Missense_Mutation p.S540Y 0.23 deleterious(0) benign(0.278) TCGA-DD-AAW3-01 6 56481993 56481993 C T DST Intron 0.20 TCGA-DD-AAW3-01 6 6007170 6007170 G A NRN1 5'UTR 0.23 TCGA-DD-AAW3-01 7 117003700 117003700 C T ASZ1 Missense_Mutation p.G460R 0.18 deleterious(0) probably_damaging(0.994) TCGA-DD-AAW3-01 7 129102863 129102863 C T STRIP2 Silent p.Y511Y 0.23 TCGA-DD-AAW3-01 7 131122635 131122635 T C MKLN1 Missense_Mutation p.V351A 0.21 tolerated(0.48) benign(0.004) TCGA-DD-AAW3-01 7 137801545 137801545 T A AKR1D1 3'UTR 0.25 TCGA-DD-AAW3-01 7 82585150 82585157 AGTCTGTC - PCLO Frame_Shift_Del p.D1706* 0.15 TCGA-DD-AAW3-01 8 124219945 124219945 T G FAM83A 3'UTR 0.20 TCGA-DD-AAW3-01 8 145533250 145533250 T A HSF1 Silent p.L112L 0.70 TCGA-DD-AAW3-01 8 68395960 68395960 G A CPA6 Intron 0.79 TCGA-DD-AAW3-01 8 92982954 92982954 C T RUNX1T1 Missense_Mutation p.A502T 0.21 tolerated(0.1) benign(0.195) TCGA-DD-AAW3-01 8 95835553 95835553 G C INTS8 5'UTR 0.20 TCGA-DD-AAW3-01 9 100105806 100105806 T C CCDC180 Missense_Mutation p.V864A 0.31 tolerated(0.16) benign(0.294) TCGA-DD-AAW3-01 9 111617761 111617761 G A ACTL7B Silent p.S150S 0.29 TCGA-DD-AAW3-01 9 139234263 139234263 C T GPSM1 Silent p.I358I 0.51 TCGA-DD-AAW3-01 9 139902954 139902954 G T ABCA2 Missense_Mutation p.P2397T 0.37 tolerated_low_confidence(0.11) unknown(0) TCGA-DD-AAW3-01 9 139925353 139925353 C T FUT7 Missense_Mutation p.A280T 0.40 tolerated(0.37) benign(0.044) TCGA-DD-AAW3-01 9 21971190 21971190 G T CDKN2A Missense_Mutation p.S56R 0.44 deleterious(0) probably_damaging(0.99) TCGA-DD-AAW3-01 X 11318739 11318739 A T AMELX 3'UTR 0.88 TCGA-DD-AAW3-01 X 118925554 118925554 T C RPL39 5'UTR 0.82 TCGA-DD-AAW3-01 X 140926121 140926121 G C MAGEC3 Missense_Mutation p.W7S 0.88 deleterious_low_confidence(0) benign(0.403) TCGA-DD-AAW3-01 X 20222202 20222203 - T RPS6KA3 Frame_Shift_Ins p.I88Nfs*5 0.27 TCGA-DD-AAW3-01 X 32235165 32235165 A T DMD Silent p.S2102S 0.87 TCGA-DD-AAW3-01 Y 16942170 16942170 G T NLGN4Y Missense_Mutation p.D458Y 0.82 deleterious(0.01) probably_damaging(1) TCGA-ED-A459-01 10 120801729 120801729 T A EIF3A Silent p.R1101R 0.16 TCGA-ED-A459-01 10 120914639 120914639 T A SFXN4 Nonsense_Mutation p.K223* 0.08 TCGA-ED-A459-01 10 127677989 127677989 T A FANK1 Intron 0.21 TCGA-ED-A459-01 10 1569047 1569047 A T ADARB2 Intron 0.08 TCGA-ED-A459-01 10 17087018 17087018 T A CUBN Missense_Mutation p.L1220F 0.06 tolerated(0.64) benign(0.009) TCGA-ED-A459-01 10 26462749 26462749 T A MYO3A Missense_Mutation p.Y1186N 0.08 tolerated(0.15) benign(0.197) TCGA-ED-A459-01 10 26581901 26581901 G A GAD2 Missense_Mutation p.R522K 0.53 tolerated(0.68) benign(0.001) TCGA-ED-A459-01 10 27024491 27024491 C T PDSS1 Silent p.L337L 0.25 TCGA-ED-A459-01 10 3161001 3161001 G A PFKP Silent p.E490E 0.21 TCGA-ED-A459-01 10 37414870 37414870 G A ANKRD30A 5'UTR 0.10 TCGA-ED-A459-01 10 50121419 50121419 G T LRRC18 Intron 0.28 TCGA-ED-A459-01 10 70231585 70231585 T A DNA2 Nonsense_Mutation p.K99* 0.30 TCGA-ED-A459-01 10 74660156 74660156 A T OIT3 Missense_Mutation p.E153V 0.29 tolerated(0.17) benign(0.003) TCGA-ED-A459-01 10 75147463 75147463 T A ANXA7 Missense_Mutation p.K228M 0.11 deleterious(0) probably_damaging(0.999) TCGA-ED-A459-01 10 7627889 7627889 G T ITIH5 Nonsense_Mutation p.Y361* 0.19 TCGA-ED-A459-01 10 95116494 95116494 T A MYOF Nonsense_Mutation p.R1078* 0.07 TCGA-ED-A459-01 11 101834387 101834387 C T KIAA1377 Missense_Mutation p.S874L 0.29 deleterious(0.03) benign(0.066) TCGA-ED-A459-01 11 102737122 102737122 G A MMP12 RNA 0.23 TCGA-ED-A459-01 11 107677567 107677567 A G SLC35F2 Silent p.A150A 0.38 TCGA-ED-A459-01 11 111680436 111680436 T A ALG9 Missense_Mutation p.E384V 0.07 deleterious(0) probably_damaging(0.978) TCGA-ED-A459-01 11 111864260 111864260 A T DIXDC1 Missense_Mutation p.Q437L 0.07 deleterious(0) probably_damaging(0.977) TCGA-ED-A459-01 11 117869879 117869879 G T IL10RA Silent p.S420S 0.34 TCGA-ED-A459-01 11 118889502 118889502 A T TRAPPC4 5'UTR 0.06 TCGA-ED-A459-01 11 18057649 18057649 G C TPH1 Nonsense_Mutation p.S53* 0.24 TCGA-ED-A459-01 11 18158779 18158779 A T MRGPRX3 Silent p.T10T 0.03 TCGA-ED-A459-01 11 18291314 18291315 - A SAA1 Frame_Shift_Ins p.L95Afs*3 0.25 TCGA-ED-A459-01 11 28135039 28135039 A C METTL15 Missense_Mutation p.Q53P 0.36 tolerated_low_confidence(0.16) benign(0.025) TCGA-ED-A459-01 11 46895256 46895256 A T LRP4 Intron 0.15 TCGA-ED-A459-01 11 5537570 5537570 T A UBQLNL Silent p.I34I 0.07 TCGA-ED-A459-01 11 59420493 59420493 T A PATL1 Splice_Site p.X374_splice 0.09 TCGA-ED-A459-01 11 59857913 59857913 A T MS4A2 Missense_Mutation p.K97N 0.16 tolerated(0.1) benign(0.15) TCGA-ED-A459-01 11 60777231 60777231 C G CD6 Silent p.S323S 0.30 TCGA-ED-A459-01 11 61026645 61026645 T A VWCE Silent p.S790S 0.06 TCGA-ED-A459-01 11 6291552 6291552 G A CCKBR Missense_Mutation p.R213Q 0.48 tolerated(0.64) benign(0.003) TCGA-ED-A459-01 11 64023034 64023034 A T PLCB3 Silent p.A181A 0.05 TCGA-ED-A459-01 11 64366298 64366298 C A SLC22A12 Silent p.R325R 0.53 TCGA-ED-A459-01 11 64693301 64693301 C T PPP2R5B Missense_Mutation p.S32F 0.35 deleterious(0.01) possibly_damaging(0.462) TCGA-ED-A459-01 11 64888161 64888161 T A FAU Missense_Mutation p.N132Y 0.05 deleterious(0) probably_damaging(0.967) TCGA-ED-A459-01 11 64939933 64939933 C T SPDYC Silent p.L125L 0.07 TCGA-ED-A459-01 11 76506948 76506950 CAC - TSKU In_Frame_Del p.T97del 0.10 TCGA-ED-A459-01 11 79113136 79113136 A G TENM4 Intron 0.37 TCGA-ED-A459-01 11 85373221 85373221 T C CREBZF 3'UTR 0.34 TCGA-ED-A459-01 11 85374604 85374604 T A CREBZF 3'UTR 0.07 TCGA-ED-A459-01 11 9182408 9182408 T G DENND5A Missense_Mutation p.K763T 0.06 deleterious(0) probably_damaging(1) TCGA-ED-A459-01 11 93471382 93471382 A G TAF1D Missense_Mutation p.S118P 0.37 deleterious(0.04) benign(0.32) TCGA-ED-A459-01 12 104067722 104067722 A T STAB2 Silent p.I803I 0.10 TCGA-ED-A459-01 12 109526088 109526088 T G ALKBH2 Missense_Mutation p.S237R 0.39 deleterious(0) probably_damaging(0.999) TCGA-ED-A459-01 12 11036772 11036772 T A PRH1 Silent p.S15S 0.07 TCGA-ED-A459-01 12 113312977 113312977 T C RPH3A Splice_Site p.X295_splice 0.12 TCGA-ED-A459-01 12 121458369 121458369 T A OASL Missense_Mutation p.S514C 0.13 deleterious_low_confidence(0) benign(0.006) TCGA-ED-A459-01 12 121458371 121458371 G C OASL Missense_Mutation p.A513G 0.13 tolerated_low_confidence(0.25) benign(0.007) TCGA-ED-A459-01 12 122691677 122691677 T A B3GNT4 Silent p.A293A 0.11 TCGA-ED-A459-01 12 132334436 132334436 G A MMP17 Missense_Mutation p.D432N 0.14 deleterious(0) probably_damaging(0.995) TCGA-ED-A459-01 12 132396633 132396633 A G ULK1 Silent p.P365P 0.48 TCGA-ED-A459-01 12 2927434 2927434 A T ITFG2 Missense_Mutation p.S133C 0.39 tolerated(0.07) possibly_damaging(0.823) TCGA-ED-A459-01 12 40626117 40626117 A T LRRK2 Silent p.P93P 0.05 TCGA-ED-A459-01 12 44913954 44913954 A T NELL2 Missense_Mutation p.I795N 0.28 deleterious(0) possibly_damaging(0.481) TCGA-ED-A459-01 12 52699941 52699941 T A KRT86 Missense_Mutation p.L375Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-ED-A459-01 12 56087893 56087893 T A ITGA7 Missense_Mutation p.Q820L 0.04 deleterious(0.03) benign(0.287) TCGA-ED-A459-01 12 56636966 56636966 C A ANKRD52 Missense_Mutation p.R1064L 0.21 deleterious_low_confidence(0.02) benign(0.008) TCGA-ED-A459-01 12 57324233 57324233 G A SDR9C7 Silent p.L113L 0.06 TCGA-ED-A459-01 12 85279337 85279337 A G SLC6A15 Missense_Mutation p.C151R 0.33 deleterious(0) possibly_damaging(0.882) TCGA-ED-A459-01 12 85449747 85449747 A T LRRIQ1 Missense_Mutation p.Q392H 0.10 tolerated(0.05) benign(0.004) TCGA-ED-A459-01 12 86276027 86276027 T A NTS Silent p.T129T 0.07 TCGA-ED-A459-01 12 88900157 88900157 T A KITLG Splice_Site p.X239_splice 0.09 TCGA-ED-A459-01 12 95452114 95452114 T A NR2C1 Missense_Mutation p.R172S 0.09 tolerated(0.06) possibly_damaging(0.699) TCGA-ED-A459-01 12 97045523 97045523 T C C12orf55 Missense_Mutation p.L1677S 0.32 deleterious(0) possibly_damaging(0.883) TCGA-ED-A459-01 13 113699017 113699017 G T MCF2L Intron 0.36 TCGA-ED-A459-01 13 113730402 113730402 G A MCF2L Silent p.A477A 0.28 TCGA-ED-A459-01 13 42830541 42830541 A T FHP1 RNA 0.12 TCGA-ED-A459-01 13 50205503 50205503 T G ARL11 3'UTR 0.33 TCGA-ED-A459-01 13 88330413 88330413 T A SLITRK5 Missense_Mutation p.F924I 0.06 deleterious(0.01) benign(0.008) TCGA-ED-A459-01 13 88330414 88330414 T A SLITRK5 Missense_Mutation p.F924Y 0.06 tolerated(1) benign(0) TCGA-ED-A459-01 14 35550481 35550481 A C FAM177A1 3'UTR 0.62 TCGA-ED-A459-01 14 36154285 36154285 T C RALGAPA1 Missense_Mutation p.N876D 0.49 tolerated(0.37) benign(0.133) TCGA-ED-A459-01 14 50361210 50361210 G T ARF6 3'UTR 0.29 TCGA-ED-A459-01 14 65208056 65208056 G T PLEKHG3 Missense_Mutation p.E551D 0.57 deleterious(0.02) benign(0.207) TCGA-ED-A459-01 14 93714872 93714872 G A BTBD7 Nonsense_Mutation p.R691* 0.29 TCGA-ED-A459-01 15 31325077 31325077 T A TRPM1 Missense_Mutation p.I940F 0.04 tolerated(0.12) possibly_damaging(0.522) TCGA-ED-A459-01 15 38818572 38818572 A T RASGRP1 Missense_Mutation p.L85Q 0.26 deleterious(0.01) benign(0.158) TCGA-ED-A459-01 15 40094295 40094295 A T GPR176 Missense_Mutation p.W196R 0.10 tolerated(0.1) benign(0.188) TCGA-ED-A459-01 15 40675114 40675114 A T KNSTRN Silent p.P26P 0.08 TCGA-ED-A459-01 15 43571320 43571320 T C TGM7 Missense_Mutation p.I612V 0.05 deleterious(0.02) benign(0.032) TCGA-ED-A459-01 15 48058775 48058775 C A SEMA6D Intron 0.43 TCGA-ED-A459-01 15 50782610 50782610 A G USP8 Missense_Mutation p.R708G 0.29 deleterious(0.01) possibly_damaging(0.549) TCGA-ED-A459-01 15 51285722 51285722 A T AP4E1 Missense_Mutation p.D749V 0.08 deleterious(0.03) benign(0.066) TCGA-ED-A459-01 15 75115899 75115899 G T LMAN1L Splice_Site p.X400_splice 0.16 TCGA-ED-A459-01 15 77907675 77907675 T G LINGO1 Missense_Mutation p.S192R 0.41 tolerated(0.14) probably_damaging(0.929) TCGA-ED-A459-01 15 85401062 85401062 G T ALPK3 Silent p.L1233L 0.25 TCGA-ED-A459-01 16 1308140 1308140 A T TPSD1 Missense_Mutation p.T201S 0.05 tolerated(0.47) benign(0.05) TCGA-ED-A459-01 16 1510832 1510832 T A CLCN7 Missense_Mutation p.R157W 0.08 deleterious(0.01) benign(0.325) TCGA-ED-A459-01 16 22126671 22126671 C T VWA3A Silent p.L231L 0.21 TCGA-ED-A459-01 16 2263817 2263817 T A PGP Missense_Mutation p.Q293L 0.06 tolerated(0.17) benign(0.037) TCGA-ED-A459-01 16 30793613 30793613 T A ZNF629 Missense_Mutation p.Q679L 0.07 tolerated(0.11) probably_damaging(0.947) TCGA-ED-A459-01 16 69375171 69375171 A G NIP7 Missense_Mutation p.N124S 0.54 tolerated(0.2) benign(0.006) TCGA-ED-A459-01 16 71963964 71963967 CTTT - IST1 3'Flank 0.50 TCGA-ED-A459-01 17 10317595 10317595 T A MYH8 Missense_Mutation p.T308S 0.10 tolerated(0.09) benign(0.018) TCGA-ED-A459-01 17 17179373 17179373 T A COPS3 Missense_Mutation p.H54L 0.11 deleterious(0) possibly_damaging(0.884) TCGA-ED-A459-01 17 27017195 27017196 AG - SUPT6H Frame_Shift_Del p.E1147Gfs*35 0.24 TCGA-ED-A459-01 17 38711882 38711882 A G CCR7 Silent p.Y83Y 0.12 TCGA-ED-A459-01 17 39135187 39135187 C T KRT40 Silent p.E355E 0.33 TCGA-ED-A459-01 17 39521676 39521676 G A KRT33B Missense_Mutation p.R240C 0.33 deleterious(0.04) benign(0.266) TCGA-ED-A459-01 17 40474482 40474482 T A STAT3 Missense_Mutation p.Y640F 0.06 tolerated(0.24) probably_damaging(0.999) TCGA-ED-A459-01 17 42398495 42398495 C T SLC25A39 Missense_Mutation p.A208T 0.27 tolerated(0.06) benign(0.02) TCGA-ED-A459-01 17 48668930 48668930 A G CACNA1G Missense_Mutation p.D863G 0.32 deleterious(0) probably_damaging(1) TCGA-ED-A459-01 17 53077023 53077023 A T STXBP4 Silent p.I106I 0.05 TCGA-ED-A459-01 17 56435407 56435407 T A RNF43 Missense_Mutation p.Q577L 0.10 deleterious_low_confidence(0.04) benign(0.001) TCGA-ED-A459-01 17 59155891 59155891 G A BCAS3 Splice_Site p.X791_splice 0.30 TCGA-ED-A459-01 17 65920668 65920668 A G BPTF Missense_Mutation p.E1905G 0.36 probably_damaging(0.999) TCGA-ED-A459-01 17 72349367 72349367 G T KIF19 Missense_Mutation p.G716V 0.46 tolerated(0.49) benign(0.017) TCGA-ED-A459-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.48 deleterious(0) probably_damaging(1) TCGA-ED-A459-01 18 47310188 47310188 G A ACAA2 3'UTR 0.08 TCGA-ED-A459-01 18 7013887 7013887 G T LAMA1 Missense_Mutation p.T1097K 0.45 deleterious(0) possibly_damaging(0.889) TCGA-ED-A459-01 19 10251564 10251564 T G DNMT1 Missense_Mutation p.Q1139P 0.42 tolerated(0.17) benign(0.008) TCGA-ED-A459-01 19 10906053 10906053 G C DNM2 Missense_Mutation p.E378D 0.34 tolerated(0.33) benign(0.111) TCGA-ED-A459-01 19 11649740 11649740 A T CNN1 5'UTR 0.09 TCGA-ED-A459-01 19 18967008 18967008 C T UPF1 Nonsense_Mutation p.Q575* 0.06 TCGA-ED-A459-01 19 19656087 19656087 G A CILP2 Silent p.V911V 0.23 TCGA-ED-A459-01 19 19738291 19738291 T A LPAR2 5'UTR 0.25 TCGA-ED-A459-01 19 21132284 21132284 G T ZNF85 Missense_Mutation p.A322S 0.62 tolerated(0.06) possibly_damaging(0.461) TCGA-ED-A459-01 19 31768845 31768845 A T TSHZ3 Silent p.T618T 0.07 TCGA-ED-A459-01 19 37677114 37677114 T A ZNF585B Missense_Mutation p.H442L 0.08 deleterious(0) benign(0.122) TCGA-ED-A459-01 19 3779601 3779601 T A MATK Missense_Mutation p.E287V 0.17 tolerated(0.08) benign(0.005) TCGA-ED-A459-01 19 38817261 38817261 T A KCNK6 Missense_Mutation p.D117E 0.06 deleterious(0) probably_damaging(0.942) TCGA-ED-A459-01 19 49548452 49548452 C T CGB5 Silent p.P133P 0.33 TCGA-ED-A459-01 19 49972222 49972222 G T ALDH16A1 Missense_Mutation p.M742I 0.29 tolerated(0.23) benign(0.091) TCGA-ED-A459-01 19 52448896 52448896 A T ZNF613 Missense_Mutation p.N587I 0.36 tolerated(0.74) benign(0) TCGA-ED-A459-01 19 54962528 54962528 G A LENG8 Missense_Mutation p.A3T 0.33 tolerated_low_confidence(0.23) benign(0.056) TCGA-ED-A459-01 19 57889239 57889239 A T ZNF547 Missense_Mutation p.S299C 0.07 deleterious(0.02) benign(0.037) TCGA-ED-A459-01 19 58018242 58018242 C A ZNF773 Missense_Mutation p.A260D 0.07 tolerated(0.09) probably_damaging(0.967) TCGA-ED-A459-01 19 58152706 58152706 T G ZNF211 Silent p.P349P 0.30 TCGA-ED-A459-01 1 100174554 100174554 T A FRRS1 Missense_Mutation p.Q594L 0.39 tolerated_low_confidence(1) benign(0.005) TCGA-ED-A459-01 1 10408722 10408722 A T KIF1B Missense_Mutation p.I1248F 0.31 tolerated(0.07) possibly_damaging(0.472) TCGA-ED-A459-01 1 1103273 1103273 T A MIR200A RNA 0.08 TCGA-ED-A459-01 1 110585809 110585809 C G STRIP1 Missense_Mutation p.R329G 0.31 deleterious(0) probably_damaging(0.995) TCGA-ED-A459-01 1 110709579 110709579 C A SLC6A17 Missense_Mutation p.R10S 0.44 tolerated(0.06) possibly_damaging(0.746) TCGA-ED-A459-01 1 12313850 12313850 T A VPS13D Silent p.T212T 0.33 TCGA-ED-A459-01 1 1268035 1268035 G T TAS1R3 Missense_Mutation p.C375F 0.24 tolerated(0.21) benign(0.077) TCGA-ED-A459-01 1 1328031 1328031 G A CCNL2 Intron 0.25 TCGA-ED-A459-01 1 1328107 1328107 G A CCNL2 Intron 0.19 TCGA-ED-A459-01 1 1328110 1328110 G A CCNL2 Intron 0.18 TCGA-ED-A459-01 1 149904191 149904191 T A MTMR11 Silent p.S339S 0.08 TCGA-ED-A459-01 1 152884235 152884235 T A IVL 3'UTR 0.41 TCGA-ED-A459-01 1 152884297 152884297 T A IVL 3'UTR 0.05 TCGA-ED-A459-01 1 155030505 155030505 A T ADAM15 Missense_Mutation p.Q532L 0.06 tolerated(0.33) possibly_damaging(0.889) TCGA-ED-A459-01 1 155931649 155931649 T A ARHGEF2 Missense_Mutation p.E424V 0.11 deleterious(0) possibly_damaging(0.713) TCGA-ED-A459-01 1 156230352 156230352 T A SMG5 Missense_Mutation p.S725C 0.06 tolerated(0.18) possibly_damaging(0.7) TCGA-ED-A459-01 1 158517532 158517532 T A OR6Y1 Missense_Mutation p.I122F 0.10 deleterious(0.01) benign(0.001) TCGA-ED-A459-01 1 159913244 159913244 T A IGSF9 Translation_Start_Site p.M1? 0.08 deleterious(0.03) benign(0.029) TCGA-ED-A459-01 1 160325525 160325525 A T NCSTN Missense_Mutation p.N478I 0.04 tolerated(0.12) benign(0.392) TCGA-ED-A459-01 1 16578144 16578145 TG - FBXO42 Frame_Shift_Del p.Q392Vfs*8 0.11 TCGA-ED-A459-01 1 1687958 1687958 G A NADK Silent p.F306F 0.40 TCGA-ED-A459-01 1 169521814 169521814 T A F5 Missense_Mutation p.Q426L 0.07 deleterious(0) probably_damaging(0.999) TCGA-ED-A459-01 1 170521319 170521319 G T GORAB Missense_Mutation p.V301L 0.09 tolerated(0.13) possibly_damaging(0.654) TCGA-ED-A459-01 1 179562719 179562719 G A TDRD5 Silent p.R119R 0.33 TCGA-ED-A459-01 1 19480377 19480377 T A UBR4 Missense_Mutation p.N2172I 0.57 possibly_damaging(0.719) TCGA-ED-A459-01 1 19596175 19596175 T A AKR7L Intron 0.11 TCGA-ED-A459-01 1 197108988 197108988 G T ASPM Missense_Mutation p.F645L 0.37 tolerated(0.63) benign(0.001) TCGA-ED-A459-01 1 207679331 207679331 T A CR1 Nonsense_Mutation p.Y68* 0.07 TCGA-ED-A459-01 1 211652560 211652560 G T RD3 Missense_Mutation p.H136N 0.26 tolerated(0.1) benign(0.076) TCGA-ED-A459-01 1 215972280 215972280 T C USH2A Silent p.G3309G 0.41 TCGA-ED-A459-01 1 23222044 23222044 T A EPHB2 Silent p.A557A 0.14 TCGA-ED-A459-01 1 232944135 232944135 A T MAP10 3'UTR 0.07 TCGA-ED-A459-01 1 236708178 236708178 T C LGALS8 Missense_Mutation p.I298T 0.37 deleterious(0.01) benign(0.012) TCGA-ED-A459-01 1 237868576 237868576 G A RYR2 Silent p.L3171L 0.30 TCGA-ED-A459-01 1 243354349 243354349 T A CEP170 Missense_Mutation p.D360V 0.07 deleterious(0) probably_damaging(0.999) TCGA-ED-A459-01 1 26158452 26158452 A G MTFR1L Missense_Mutation p.I272V 0.06 deleterious(0.05) benign(0.034) TCGA-ED-A459-01 1 46531740 46531740 T C PIK3R3 Missense_Mutation p.T203A 0.13 deleterious(0.04) benign(0.267) TCGA-ED-A459-01 1 52943444 52943444 T A ZCCHC11 Silent p.V653V 0.09 TCGA-ED-A459-01 1 55130862 55130862 A G MROH7 Silent p.S418S 0.39 TCGA-ED-A459-01 1 6314095 6314095 A C GPR153 Missense_Mutation p.Y157D 0.21 deleterious(0) probably_damaging(0.999) TCGA-ED-A459-01 1 66081748 66081748 A T LEPR Missense_Mutation p.T685S 0.05 deleterious(0.04) benign(0.244) TCGA-ED-A459-01 1 86144381 86144381 T A ZNHIT6 Intron 0.11 TCGA-ED-A459-01 1 9027785 9027785 C A CA6 Nonsense_Mutation p.Y213* 0.28 TCGA-ED-A459-01 1 90473063 90473063 A T ZNF326 Silent p.G123G 0.08 TCGA-ED-A459-01 20 2397908 2397908 A T TGM6 Missense_Mutation p.K456M 0.06 deleterious(0) probably_damaging(0.945) TCGA-ED-A459-01 20 33582028 33582028 A G MYH7B Missense_Mutation p.K884E 0.36 probably_damaging(0.995) TCGA-ED-A459-01 20 42169806 42169806 A T L3MBTL1 3'UTR 0.33 TCGA-ED-A459-01 20 54961584 54961584 T A AURKA Silent p.T16T 0.07 TCGA-ED-A459-01 20 62562355 62562355 A T DNAJC5 Missense_Mutation p.Q158L 0.06 deleterious(0) benign(0.339) TCGA-ED-A459-01 21 41384983 41384983 G A DSCAM Missense_Mutation p.A2006V 0.18 deleterious_low_confidence(0.01) benign(0.01) TCGA-ED-A459-01 21 41384984 41384984 C G DSCAM Missense_Mutation p.A2006P 0.18 deleterious_low_confidence(0.01) benign(0.031) TCGA-ED-A459-01 21 43505473 43505473 A T UMODL1 Missense_Mutation p.Q185L 0.04 tolerated(0.32) benign(0.145) TCGA-ED-A459-01 22 29885288 29885292 AGCAA - NEFH Frame_Shift_Del p.A554Gfs*8 0.22 TCGA-ED-A459-01 22 35789564 35789564 A T HMOX1 Silent p.T280T 0.06 TCGA-ED-A459-01 22 36919311 36919311 T A EIF3D Missense_Mutation p.Q137L 0.08 tolerated(0.39) benign(0.021) TCGA-ED-A459-01 22 39918660 39918660 G T ATF4 3'UTR 0.31 TCGA-ED-A459-01 22 41911430 41911430 A T ACO2 Missense_Mutation p.D192V 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-ED-A459-01 22 42099396 42099396 T A MEI1 Missense_Mutation p.L79Q 0.07 tolerated(0.07) possibly_damaging(0.533) TCGA-ED-A459-01 22 50278080 50278104 ACCTCCCTGCTCTCCATTACGATGA - ZBED4 Frame_Shift_Del p.P259Qfs*4 0.20 TCGA-ED-A459-01 22 51121840 51121840 T A SHANK3 Missense_Mutation p.F320I 0.07 probably_damaging(0.999) TCGA-ED-A459-01 2 102483701 102483701 C G MAP4K4 Missense_Mutation p.S717C 0.25 tolerated_low_confidence(0.05) possibly_damaging(0.885) TCGA-ED-A459-01 2 11054147 11054147 C A KCNF1 3'UTR 0.30 TCGA-ED-A459-01 2 11054148 11054148 C A KCNF1 3'UTR 0.30 TCGA-ED-A459-01 2 11913775 11913775 A T LPIN1 Missense_Mutation p.Q258L 0.09 tolerated(0.31) benign(0) TCGA-ED-A459-01 2 128334177 128334177 A T MYO7B Missense_Mutation p.E248V 0.25 deleterious(0.01) possibly_damaging(0.873) TCGA-ED-A459-01 2 145155986 145155986 T A ZEB2 Missense_Mutation p.Y923F 0.32 tolerated(0.3) possibly_damaging(0.484) TCGA-ED-A459-01 2 166245904 166245904 A T SCN2A Missense_Mutation p.K1863M 0.25 deleterious(0) probably_damaging(0.999) TCGA-ED-A459-01 2 166897947 166897947 A T SCN1A Missense_Mutation p.C737S 0.14 deleterious(0.01) possibly_damaging(0.884) TCGA-ED-A459-01 2 167163108 167163108 A C SCN9A Missense_Mutation p.L127V 0.43 tolerated(0.11) benign(0.103) TCGA-ED-A459-01 2 173344405 173344405 A T ITGA6 Silent p.T475T 0.36 TCGA-ED-A459-01 2 179433349 179433349 G A TTN Missense_Mutation p.P25837L 0.10 TCGA-ED-A459-01 2 183799524 183799524 T C NCKAP1 Missense_Mutation p.I945V 0.32 tolerated(0.24) benign(0.044) TCGA-ED-A459-01 2 210782504 210782504 C T UNC80 Missense_Mutation p.A1612V 0.31 probably_damaging(0.987) TCGA-ED-A459-01 2 216261912 216261912 T C FN1 Silent p.A1184A 0.22 TCGA-ED-A459-01 2 219897276 219897276 G A CCDC108 Silent p.F187F 0.26 TCGA-ED-A459-01 2 220333737 220333737 T A SPEG Missense_Mutation p.V1153E 0.11 probably_damaging(0.996) TCGA-ED-A459-01 2 230377533 230377533 T A DNER Missense_Mutation p.Q371H 0.06 tolerated(0.8) benign(0.002) TCGA-ED-A459-01 2 232326345 232326345 T A NCL Silent p.A173A 0.09 TCGA-ED-A459-01 2 29416521 29416521 T C ALK Missense_Mutation p.M1478V 0.31 tolerated(0.55) benign(0.004) TCGA-ED-A459-01 2 31756443 31756443 T A AL133247.2 Intron 0.08 TCGA-ED-A459-01 2 38804603 38804603 C G HNRNPLL Missense_Mutation p.G287R 0.29 deleterious(0.03) probably_damaging(0.993) TCGA-ED-A459-01 2 85769144 85769144 A T MAT2A Intron 0.07 TCGA-ED-A459-01 2 89197018 89197018 A T IGKV5-2 Missense_Mutation p.E21D 0.12 tolerated(1) benign(0.076) TCGA-ED-A459-01 2 96646531 96646531 G C ANKRD36C Nonsense_Mutation p.S199* 0.27 TCGA-ED-A459-01 2 96688872 96688872 C A GPAT2 Missense_Mutation p.G711C 0.24 tolerated(0.19) possibly_damaging(0.837) TCGA-ED-A459-01 2 96919803 96919803 T C TMEM127 Missense_Mutation p.I154V 0.39 tolerated(0.25) benign(0.007) TCGA-ED-A459-01 3 101451370 101451370 G A CEP97 Silent p.L200L 0.15 TCGA-ED-A459-01 3 12195118 12195118 T A TIMP4 Missense_Mutation p.Q191L 0.07 deleterious(0) probably_damaging(0.999) TCGA-ED-A459-01 3 12198366 12198366 A G TIMP4 Silent p.C102C 0.30 TCGA-ED-A459-01 3 124048793 124048793 A T KALRN Missense_Mutation p.H455L 0.29 tolerated(0.06) benign(0.237) TCGA-ED-A459-01 3 124592297 124592297 T A ITGB5 Missense_Mutation p.K51I 0.08 deleterious(0.01) possibly_damaging(0.797) TCGA-ED-A459-01 3 127441397 127441397 T C MGLL Missense_Mutation p.Q92R 0.35 tolerated(0.12) benign(0.009) TCGA-ED-A459-01 3 12856693 12856693 G T CAND2 Missense_Mutation p.A354S 0.40 tolerated(0.3) benign(0.135) TCGA-ED-A459-01 3 131418758 131418758 T A CPNE4 Missense_Mutation p.I143F 0.07 deleterious(0.01) possibly_damaging(0.543) TCGA-ED-A459-01 3 147108887 147108887 T A ZIC4 Missense_Mutation p.S329C 0.09 deleterious(0) probably_damaging(0.991) TCGA-ED-A459-01 3 150398678 150398678 T A FAM194A Missense_Mutation p.I308F 0.08 deleterious(0) possibly_damaging(0.897) TCGA-ED-A459-01 3 15093970 15093970 A T MRPS25 Missense_Mutation p.L167Q 0.07 tolerated(0.19) benign(0.006) TCGA-ED-A459-01 3 164786876 164786876 T A SI Silent p.T121T 0.04 TCGA-ED-A459-01 3 195785461 195785461 T A TFRC Missense_Mutation p.N527Y 0.09 deleterious(0) probably_damaging(0.993) TCGA-ED-A459-01 3 197427705 197427705 T A KIAA0226 Missense_Mutation p.E347V 0.10 tolerated(0.2) benign(0.098) TCGA-ED-A459-01 3 38182798 38182798 G A MYD88 3'UTR 0.34 TCGA-ED-A459-01 3 38945427 38945427 T A SCN11A Missense_Mutation p.T591S 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-ED-A459-01 3 42674105 42674105 A G NKTR Missense_Mutation p.K188R 0.29 deleterious_low_confidence(0.03) unknown(0) TCGA-ED-A459-01 3 48716129 48716129 T A NCKIPSD Silent p.P611P 0.07 TCGA-ED-A459-01 3 52283620 52283620 C T PPM1M Intron 0.08 TCGA-ED-A459-01 3 52489713 52489713 C T NISCH Missense_Mutation p.A19V 0.53 tolerated(1) probably_damaging(0.97) TCGA-ED-A459-01 3 53857409 53857409 G A CHDH Silent p.A209A 0.10 TCGA-ED-A459-01 3 62518735 62518735 T A CADPS Splice_Site p.X702_splice 0.08 TCGA-ED-A459-01 3 9776024 9776024 A C BRPF1 Missense_Mutation p.Q67P 0.24 tolerated(0.28) benign(0) TCGA-ED-A459-01 3 97868315 97868315 T A OR5H14 Missense_Mutation p.L29Q 0.06 deleterious(0.01) possibly_damaging(0.823) TCGA-ED-A459-01 4 113353386 113353386 A G ALPK1 Missense_Mutation p.N895D 0.51 tolerated(0.42) benign(0) TCGA-ED-A459-01 4 113461976 113461976 C A C4orf21 Splice_Site p.X1970_splice 0.50 TCGA-ED-A459-01 4 113462074 113462074 G A C4orf21 Missense_Mutation p.A1938V 0.53 tolerated(0.19) possibly_damaging(0.482) TCGA-ED-A459-01 4 1332275 1332275 A T MAEA Missense_Mutation p.N322I 0.07 deleterious(0) probably_damaging(0.973) TCGA-ED-A459-01 4 15841652 15841652 T G CD38 Silent p.T221T 0.12 TCGA-ED-A459-01 4 23797512 23797512 T A PPARGC1A Missense_Mutation p.K777M 0.06 deleterious(0) unknown(0) TCGA-ED-A459-01 4 69962549 69962549 C A UGT2B7 Missense_Mutation p.T104K 0.41 deleterious(0.03) benign(0.361) TCGA-ED-A459-01 5 109026191 109026191 A G MAN2A1 Missense_Mutation p.M25V 0.26 tolerated(0.05) benign(0.17) TCGA-ED-A459-01 5 112889035 112889035 A T YTHDC2 Missense_Mutation p.I616F 0.06 deleterious(0) probably_damaging(0.986) TCGA-ED-A459-01 5 134117757 134117757 A T DDX46 Silent p.L342L 0.06 TCGA-ED-A459-01 5 134192573 134192574 CA T C5orf24 3'UTR 0.10 TCGA-ED-A459-01 5 136324224 136324224 A T SPOCK1 Missense_Mutation p.I272N 0.34 deleterious(0) probably_damaging(0.982) TCGA-ED-A459-01 5 137226191 137226191 A G PKD2L2 Missense_Mutation p.H18R 0.31 tolerated(0.55) benign(0.002) TCGA-ED-A459-01 5 140176896 140176896 G A PCDHA2 Missense_Mutation p.A783T 0.29 tolerated_low_confidence(0.65) benign(0.004) TCGA-ED-A459-01 5 140744766 140744766 A T PCDHGA5 Missense_Mutation p.E290V 0.12 deleterious_low_confidence(0.01) benign(0.392) TCGA-ED-A459-01 5 146792244 146792244 T A DPYSL3 Missense_Mutation p.E297V 0.11 deleterious(0) probably_damaging(0.999) TCGA-ED-A459-01 5 160061560 160061560 T A ATP10B Missense_Mutation p.Q394H 0.08 deleterious(0.02) possibly_damaging(0.582) TCGA-ED-A459-01 5 167474526 167474526 T C TENM2 Silent p.D427D 0.28 TCGA-ED-A459-01 5 169023605 169023605 C T SPDL1 Missense_Mutation p.T311I 0.30 deleterious(0) possibly_damaging(0.53) TCGA-ED-A459-01 5 33648938 33648938 G A ADAMTS12 Nonsense_Mutation p.Q490* 0.36 TCGA-ED-A459-01 5 38490325 38490325 A T LIFR Missense_Mutation p.L712I 0.12 deleterious(0.01) probably_damaging(0.957) TCGA-ED-A459-01 5 55259982 55259990 ACAGGATCA - IL6ST In_Frame_Del p.F214_V217delinsL 0.22 TCGA-ED-A459-01 5 65000103 65000103 T A SGTB Intron 0.09 TCGA-ED-A459-01 6 102250278 102250278 G A GRIK2 Missense_Mutation p.D390N 0.27 deleterious(0) probably_damaging(0.992) TCGA-ED-A459-01 6 109690222 109690222 T A CD164 Splice_Site p.X143_splice 0.07 TCGA-ED-A459-01 6 109774931 109774931 G A MICAL1 Missense_Mutation p.H126Y 0.08 deleterious(0) probably_damaging(1) TCGA-ED-A459-01 6 26392974 26392974 G T BTN2A2 Missense_Mutation p.D451Y 0.32 deleterious(0) probably_damaging(0.977) TCGA-ED-A459-01 6 30917142 30917142 C T DPCR1 Missense_Mutation p.P301S 0.33 tolerated(0.54) unknown(0) TCGA-ED-A459-01 6 31544903 31544903 A T TNF Missense_Mutation p.Q97H 0.07 deleterious(0.05) benign(0.019) TCGA-ED-A459-01 6 33263466 33263466 T A RGL2 Missense_Mutation p.H280L 0.07 deleterious(0.04) probably_damaging(0.928) TCGA-ED-A459-01 6 33403036 33403036 T C SYNGAP1 Missense_Mutation p.I206T 0.28 deleterious(0) benign(0.218) TCGA-ED-A459-01 6 42036240 42036240 A T TAF8 Silent p.T225T 0.07 TCGA-ED-A459-01 6 44223243 44223243 C A SLC35B2 Missense_Mutation p.A167S 0.29 tolerated(0.81) benign(0.015) TCGA-ED-A459-01 6 44279864 44279864 T A AARS2 Missense_Mutation p.H127L 0.06 deleterious(0) probably_damaging(1) TCGA-ED-A459-01 6 47624347 47624347 C T GPR111 Intron 0.35 TCGA-ED-A459-01 6 72967855 72967855 G T RIMS1 Missense_Mutation p.S933I 0.29 tolerated(0.25) possibly_damaging(0.775) TCGA-ED-A459-01 6 72967911 72967911 C A RIMS1 Missense_Mutation p.R952S 0.26 deleterious(0) probably_damaging(0.996) TCGA-ED-A459-01 6 90380710 90380710 A G MDN1 Silent p.S4628S 0.29 TCGA-ED-A459-01 6 90381952 90381952 C A MDN1 Silent p.S4587S 0.23 TCGA-ED-A459-01 7 100884160 100884160 T A FIS1 Missense_Mutation p.E69V 0.07 tolerated(0.12) possibly_damaging(0.716) TCGA-ED-A459-01 7 106781395 106781395 A T PRKAR2B Missense_Mutation p.D195V 0.05 deleterious(0) probably_damaging(0.983) TCGA-ED-A459-01 7 110763113 110763113 T A LRRN3 Silent p.T95T 0.07 TCGA-ED-A459-01 7 133881819 133881819 A T LRGUK Nonsense_Mutation p.R503* 0.07 TCGA-ED-A459-01 7 147675070 147675070 G T CNTNAP2 Missense_Mutation p.C791F 0.06 deleterious(0) probably_damaging(0.998) TCGA-ED-A459-01 7 147675071 147675071 C T CNTNAP2 Silent p.C791C 0.06 TCGA-ED-A459-01 7 150884731 150884731 A T ASB10 5'Flank 0.06 TCGA-ED-A459-01 7 151878935 151878935 T A KMT2C Missense_Mutation p.S2004C 0.26 benign(0.008) TCGA-ED-A459-01 7 156556491 156556491 T A LMBR1 Splice_Site p.X142_splice 0.04 TCGA-ED-A459-01 7 21847622 21847622 C - DNAH11 Frame_Shift_Del p.Q3437Rfs*20 0.08 TCGA-ED-A459-01 7 27187129 27187129 A T HOXA6 Nonsense_Mutation p.Y80* 0.33 TCGA-ED-A459-01 7 2740227 2740227 T A AMZ1 Missense_Mutation p.Y48N 0.12 deleterious(0) probably_damaging(0.998) TCGA-ED-A459-01 7 44149920 44149920 A C AEBP1 Missense_Mutation p.T459P 0.35 deleterious(0.01) probably_damaging(0.993) TCGA-ED-A459-01 7 44578770 44578770 T A NPC1L1 Missense_Mutation p.Q409L 0.07 tolerated(0.09) possibly_damaging(0.677) TCGA-ED-A459-01 7 50129226 50129226 T A ZPBP Silent p.P69P 0.09 TCGA-ED-A459-01 7 75178268 75178268 T A HIP1 Missense_Mutation p.Q776L 0.04 deleterious(0) benign(0.008) TCGA-ED-A459-01 7 8790840 8790840 A T NXPH1 Missense_Mutation p.D86V 0.34 tolerated(0.09) benign(0.371) TCGA-ED-A459-01 7 925744 925744 A C GET4 Silent p.G69G 0.25 TCGA-ED-A459-01 8 110099893 110099893 T C TRHR Missense_Mutation p.M51T 0.43 deleterious(0.01) benign(0.001) TCGA-ED-A459-01 8 30703652 30703652 T A TEX15 Missense_Mutation p.Q961L 0.10 deleterious(0) possibly_damaging(0.856) TCGA-ED-A459-01 8 55541215 55541215 G A RP1 Nonsense_Mutation p.W1591* 0.55 TCGA-ED-A459-01 8 72958812 72958812 G T TRPA1 Missense_Mutation p.P666Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-ED-A459-01 8 92352644 92352644 T A SLC26A7 Silent p.P297P 0.06 TCGA-ED-A459-01 9 109734475 109734475 T A ZNF462 Missense_Mutation p.I2206N 0.07 probably_damaging(0.996) TCGA-ED-A459-01 9 117844994 117844994 A T TNC Missense_Mutation p.W742R 0.42 deleterious(0) probably_damaging(0.999) TCGA-ED-A459-01 9 124979380 124979380 T A LHX6 Missense_Mutation p.M217L 0.06 tolerated(0.3) probably_damaging(0.984) TCGA-ED-A459-01 9 131287658 131287658 A G GLE1 Missense_Mutation p.E362G 0.35 deleterious(0.04) benign(0.066) TCGA-ED-A459-01 9 131860591 131860591 G A CRAT Missense_Mutation p.P422L 0.15 tolerated(0.79) probably_damaging(0.952) TCGA-ED-A459-01 9 135739158 135739158 C T AK8 Nonsense_Mutation p.W76* 0.13 TCGA-ED-A459-01 9 32630489 32630489 T C TAF1L Missense_Mutation p.T1697A 0.17 tolerated_low_confidence(0.05) benign(0.001) TCGA-ED-A459-01 9 33466415 33466415 T A NOL6 Silent p.P700P 0.42 TCGA-ED-A459-01 9 88880922 88880922 T A ISCA1 3'UTR 0.10 TCGA-ED-A459-01 9 96411461 96411461 T A PHF2 Missense_Mutation p.L190H 0.07 deleterious(0) unknown(0) TCGA-ED-A459-01 X 100667970 100667970 G T HNRNPH2 Missense_Mutation p.D332Y 0.74 deleterious(0.02) probably_damaging(0.999) TCGA-ED-A459-01 X 134983800 134983800 C G SAGE1 Missense_Mutation p.S57C 0.10 tolerated(0.13) possibly_damaging(0.823) TCGA-ED-A459-01 X 152159795 152159795 A T PNMA5 Missense_Mutation p.S116R 0.07 tolerated(1) benign(0) TCGA-ED-A459-01 X 153558006 153558006 A T TKTL1 Missense_Mutation p.I587L 0.07 deleterious(0.03) benign(0.003) TCGA-ED-A459-01 X 154158501 154158501 T A F8 Silent p.P1188P 0.04 TCGA-ED-A459-01 X 47307358 47307358 T C ZNF41 Missense_Mutation p.E604G 0.86 deleterious(0) probably_damaging(0.999) TCGA-ED-A459-01 X 53583188 53583188 T A HUWE1 Intron 0.08 TCGA-ED-A459-01 X 53672381 53672381 T A HUWE1 Missense_Mutation p.Q129L 0.05 benign(0.259) TCGA-ED-A459-01 X 6069270 6069270 A T NLGN4X Missense_Mutation p.S80T 0.07 tolerated(0.62) benign(0.013) TCGA-ED-A4XI-01 10 106166547 106166547 T G CCDC147 Missense_Mutation p.L751R 0.12 deleterious(0) possibly_damaging(0.863) TCGA-ED-A4XI-01 10 33515205 33515205 G A NRP1 Missense_Mutation p.L332F 0.10 tolerated(1) benign(0.007) TCGA-ED-A4XI-01 10 38345268 38345268 A T ZNF33A Missense_Mutation p.H739L 0.16 deleterious(0) possibly_damaging(0.888) TCGA-ED-A4XI-01 10 44112662 44112662 T C ZNF485 Missense_Mutation p.F391L 0.09 deleterious(0) probably_damaging(0.997) TCGA-ED-A4XI-01 10 70679601 70679601 A T DDX50 Missense_Mutation p.Q368L 0.10 tolerated(0.05) benign(0.032) TCGA-ED-A4XI-01 10 82034339 82034339 G T MAT1A Missense_Mutation p.T341K 0.13 deleterious(0.03) benign(0.035) TCGA-ED-A4XI-01 10 89312033 89312033 A G MINPP1 Missense_Mutation p.H421R 0.04 tolerated(0.27) benign(0.161) TCGA-ED-A4XI-01 11 103027432 103027432 C T DYNC2H1 Missense_Mutation p.P1354S 0.14 probably_damaging(1) TCGA-ED-A4XI-01 11 124517357 124517357 A G SIAE Silent p.N290N 0.16 TCGA-ED-A4XI-01 11 133799610 133799610 C T IGSF9B Nonsense_Mutation p.W529* 0.10 TCGA-ED-A4XI-01 11 19206570 19206570 C T CSRP3 Missense_Mutation p.R146H 0.11 deleterious(0.04) probably_damaging(0.998) TCGA-ED-A4XI-01 11 20805310 20805310 T C NELL1 Missense_Mutation p.L90S 0.19 tolerated(0.17) benign(0.211) TCGA-ED-A4XI-01 11 63531074 63531074 T C RTN3 3'Flank 0.13 TCGA-ED-A4XI-01 11 73717271 73717271 T A UCP3 Missense_Mutation p.I94F 0.10 deleterious(0) possibly_damaging(0.812) TCGA-ED-A4XI-01 11 74546763 74546763 A G RNF169 Missense_Mutation p.N372S 0.07 deleterious(0.01) probably_damaging(0.993) TCGA-ED-A4XI-01 11 92715559 92715559 G A MTNR1B 3'UTR 0.17 TCGA-ED-A4XI-01 11 92715560 92715560 C A MTNR1B 3'UTR 0.17 TCGA-ED-A4XI-01 11 93472409 93472409 T C TAF1D Missense_Mutation p.N21S 0.17 tolerated(0.18) benign(0.187) TCGA-ED-A4XI-01 12 120878337 120878337 A G COX6A1 Silent p.E109E 0.14 TCGA-ED-A4XI-01 12 2614096 2614096 T C CACNA1C Missense_Mutation p.L401P 0.10 deleterious(0.01) probably_damaging(0.973) TCGA-ED-A4XI-01 12 266301 266301 T C IQSEC3 Missense_Mutation p.I755T 0.14 deleterious(0) probably_damaging(0.954) TCGA-ED-A4XI-01 12 4737905 4737905 C T AKAP3 Missense_Mutation p.E55K 0.20 deleterious(0.01) benign(0.205) TCGA-ED-A4XI-01 12 65633985 65633985 A G LEMD3 Missense_Mutation p.H698R 0.06 deleterious(0) probably_damaging(1) TCGA-ED-A4XI-01 12 80199549 80199549 C T PPP1R12A Splice_Site p.X608_splice 0.17 TCGA-ED-A4XI-01 12 80746178 80746178 T A OTOGL Missense_Mutation p.F1781Y 0.09 tolerated(0.09) benign(0.031) TCGA-ED-A4XI-01 13 101726938 101726938 G C NALCN Missense_Mutation p.L1344V 0.16 deleterious(0.04) probably_damaging(0.98) TCGA-ED-A4XI-01 13 101759941 101759941 G T NALCN Missense_Mutation p.L826I 0.13 deleterious(0.03) possibly_damaging(0.742) TCGA-ED-A4XI-01 13 103396874 103396874 T A LINC00283 RNA 0.06 TCGA-ED-A4XI-01 13 42830597 42830597 T C FHP1 RNA 0.06 TCGA-ED-A4XI-01 13 67801110 67801110 A T PCDH9 Nonsense_Mutation p.L488* 0.15 TCGA-ED-A4XI-01 14 20444564 20444564 C T OR4K15 Missense_Mutation p.A296V 0.04 deleterious(0) possibly_damaging(0.904) TCGA-ED-A4XI-01 14 32031297 32031297 C T NUBPL Silent p.T44T 0.17 TCGA-ED-A4XI-01 14 32563379 32563379 T A ARHGAP5 Nonsense_Mutation p.Y1168* 0.08 TCGA-ED-A4XI-01 14 50251367 50251367 A C NEMF Missense_Mutation p.V1073G 0.11 tolerated(0.17) benign(0.021) TCGA-ED-A4XI-01 15 20170098 20170098 C T IGHV1OR15-9 Silent p.Q58Q 0.08 TCGA-ED-A4XI-01 15 23890789 23890789 C T MAGEL2 Missense_Mutation p.V98I 0.26 tolerated_low_confidence(0.36) benign(0.002) TCGA-ED-A4XI-01 15 33024286 33024286 G C GREM1 3'UTR 0.08 TCGA-ED-A4XI-01 15 33024309 33024309 A G GREM1 3'UTR 0.13 TCGA-ED-A4XI-01 15 34080629 34080629 C A RYR3 Missense_Mutation p.P3267H 0.06 probably_damaging(1) TCGA-ED-A4XI-01 15 43318859 43318859 T G UBR1 Missense_Mutation p.K812T 0.22 deleterious(0) possibly_damaging(0.579) TCGA-ED-A4XI-01 15 65994749 65994749 C A DENND4A Missense_Mutation p.C775F 0.04 deleterious(0) probably_damaging(1) TCGA-ED-A4XI-01 15 71404534 71404534 T A CT62 Missense_Mutation p.S30C 0.12 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-ED-A4XI-01 15 71548960 71548960 A G THSD4 Silent p.P307P 0.11 TCGA-ED-A4XI-01 15 89151428 89151428 T C MIR1179 RNA 0.05 TCGA-ED-A4XI-01 16 27232040 27232040 T C KDM8 Missense_Mutation p.W452R 0.11 deleterious(0) probably_damaging(1) TCGA-ED-A4XI-01 16 28846411 28846411 A G ATXN2L Silent p.P822P 0.14 TCGA-ED-A4XI-01 16 31088438 31088438 A G ZNF646 Missense_Mutation p.I265V 0.12 tolerated(1) benign(0.008) TCGA-ED-A4XI-01 16 50744637 50744637 G A NOD2 Missense_Mutation p.S272N 0.09 tolerated(0.17) benign(0.01) TCGA-ED-A4XI-01 16 64981642 64981642 G T CDH11 Missense_Mutation p.A752D 0.06 deleterious(0) probably_damaging(0.999) TCGA-ED-A4XI-01 16 64981643 64981643 C T CDH11 Missense_Mutation p.A752T 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-ED-A4XI-01 16 87376465 87376487 GCCGGCTGGTGGGCTCACCTCCT - FBXO31 Splice_Site p.X243_splice 0.10 TCGA-ED-A4XI-01 17 10356573 10356573 G A MYH4 Missense_Mutation p.L1003F 0.16 deleterious(0) probably_damaging(0.999) TCGA-ED-A4XI-01 17 18872410 18872410 T G SLC5A10 Missense_Mutation p.W167G 0.07 deleterious(0) probably_damaging(0.999) TCGA-ED-A4XI-01 17 21730727 21730727 G T UBBP4 Missense_Mutation p.G10V 0.10 deleterious(0) probably_damaging(0.978) TCGA-ED-A4XI-01 17 32685070 32685070 A G CCL13 Missense_Mutation p.I73V 0.09 tolerated(0.37) possibly_damaging(0.628) TCGA-ED-A4XI-01 17 34308501 34308501 T C CCL16 5'UTR 0.09 TCGA-ED-A4XI-01 17 3680880 3680880 C T ITGAE Missense_Mutation p.V37M 0.12 deleterious(0.02) benign(0.341) TCGA-ED-A4XI-01 17 36991404 36991404 G T C17orf98 3'UTR 0.15 TCGA-ED-A4XI-01 17 40945608 40945615 AGGTATAT - WNK4 Splice_Site p.X720_splice 0.10 TCGA-ED-A4XI-01 17 4876952 4876952 C T CAMTA2 Missense_Mutation p.R733Q 0.09 deleterious(0.02) possibly_damaging(0.842) TCGA-ED-A4XI-01 17 49048126 49048126 C A SPAG9 Silent p.T1264T 0.11 TCGA-ED-A4XI-01 17 51901391 51901391 G A KIF2B Missense_Mutation p.A333T 0.14 tolerated(0.07) probably_damaging(0.957) TCGA-ED-A4XI-01 17 61613399 61613399 G A KCNH6 Missense_Mutation p.V491I 0.10 tolerated(1) benign(0.071) TCGA-ED-A4XI-01 17 79589216 79589216 T A NPLOC4 Missense_Mutation p.K62I 0.10 deleterious(0.01) benign(0.284) TCGA-ED-A4XI-01 17 8216404 8216404 A G ARHGEF15 Missense_Mutation p.I256V 0.11 tolerated(0.68) benign(0) TCGA-ED-A4XI-01 18 14537808 14537808 T C POTEC Missense_Mutation p.K268E 0.14 tolerated(0.06) benign(0.358) TCGA-ED-A4XI-01 18 3155037 3155037 C T MYOM1 Silent p.K517K 0.11 TCGA-ED-A4XI-01 18 33778679 33778679 A G MOCOS Missense_Mutation p.S87G 0.04 tolerated(0.08) probably_damaging(0.982) TCGA-ED-A4XI-01 18 61325772 61325772 G T SERPINB3 Missense_Mutation p.N148K 0.10 deleterious(0) probably_damaging(1) TCGA-ED-A4XI-01 18 77895740 77895740 A T ADNP2 Missense_Mutation p.N815I 0.16 deleterious(0.01) possibly_damaging(0.89) TCGA-ED-A4XI-01 18 9119504 9119504 A G NDUFV2 Silent p.E72E 0.11 TCGA-ED-A4XI-01 19 10600002 10600002 T C KEAP1 Missense_Mutation p.Y525C 0.06 deleterious(0) probably_damaging(0.991) TCGA-ED-A4XI-01 19 36884090 36884090 A C ZFP82 Missense_Mutation p.H384Q 0.09 deleterious(0) probably_damaging(1) TCGA-ED-A4XI-01 19 38376997 38376997 C G WDR87 Missense_Mutation p.E2399D 0.11 unknown(0) TCGA-ED-A4XI-01 19 38795638 38795638 T C C19orf33 3'UTR 0.17 TCGA-ED-A4XI-01 19 42798805 42798805 A G CIC Silent p.P1459P 0.16 TCGA-ED-A4XI-01 19 59063031 59063031 G T CHMP2A Missense_Mutation p.N218K 0.07 tolerated(0.1) unknown(0) TCGA-ED-A4XI-01 19 6586092 6586092 G T CD70 Missense_Mutation p.T174K 0.14 deleterious(0) probably_damaging(0.937) TCGA-ED-A4XI-01 19 9059729 9059729 G C MUC16 Silent p.S9239S 0.10 TCGA-ED-A4XI-01 19 9324952 9324952 C A OR7D4 Missense_Mutation p.A188S 0.24 deleterious(0.04) benign(0.439) TCGA-ED-A4XI-01 1 100154912 100154912 A C PALMD Missense_Mutation p.K366Q 0.10 tolerated(0.27) possibly_damaging(0.486) TCGA-ED-A4XI-01 1 103364507 103364507 T C COL11A1 Missense_Mutation p.K1377R 0.07 unknown(0) TCGA-ED-A4XI-01 1 111969869 111969869 T C OVGP1 Intron 0.10 TCGA-ED-A4XI-01 1 118548101 118548101 T A SPAG17 Missense_Mutation p.Y1571F 0.08 deleterious(0) probably_damaging(0.999) TCGA-ED-A4XI-01 1 152281931 152281931 C A FLG Missense_Mutation p.D1811Y 0.14 possibly_damaging(0.861) TCGA-ED-A4XI-01 1 153043186 153043186 G A SPRR2B Missense_Mutation p.P44S 0.13 deleterious_low_confidence(0) unknown(0) TCGA-ED-A4XI-01 1 155168361 155168361 T A THBS3 Missense_Mutation p.N638I 0.08 deleterious(0) probably_damaging(0.999) TCGA-ED-A4XI-01 1 158368778 158368778 G T OR10T2 Missense_Mutation p.A160D 0.05 tolerated(0.53) possibly_damaging(0.832) TCGA-ED-A4XI-01 1 162760596 162760596 A G HSD17B7 Silent p.R2R 0.12 TCGA-ED-A4XI-01 1 166818288 166818288 A G POGK Missense_Mutation p.I158V 0.18 tolerated_low_confidence(0.15) benign(0.002) TCGA-ED-A4XI-01 1 175331876 175331876 G A TNR Missense_Mutation p.A926V 0.03 deleterious(0.01) probably_damaging(0.99) TCGA-ED-A4XI-01 1 198682109 198682109 G A PTPRC Missense_Mutation p.C400Y 0.06 deleterious(0.01) probably_damaging(0.961) TCGA-ED-A4XI-01 1 220826560 220826560 G A MARK1 Silent p.Q618Q 0.04 TCGA-ED-A4XI-01 1 228559645 228559645 T C OBSCN Missense_Mutation p.C8013R 0.04 possibly_damaging(0.742) TCGA-ED-A4XI-01 1 23233358 23233358 G A EPHB2 Missense_Mutation p.V683I 0.13 tolerated(1) benign(0.012) TCGA-ED-A4XI-01 1 2458029 2458029 T C PANK4 5'UTR 0.18 TCGA-ED-A4XI-01 1 248308834 248308834 C G OR2M5 Missense_Mutation p.P129A 0.05 deleterious(0.01) possibly_damaging(0.589) TCGA-ED-A4XI-01 1 248458173 248458173 A G OR2T12 Silent p.F236F 0.03 TCGA-ED-A4XI-01 1 248789769 248789769 T C OR2T11 Missense_Mutation p.T221A 0.08 tolerated(0.45) possibly_damaging(0.464) TCGA-ED-A4XI-01 1 42921631 42921631 C T ZMYND12 Missense_Mutation p.R13H 0.17 deleterious(0.03) probably_damaging(0.951) TCGA-ED-A4XI-01 1 55624627 55624627 T C USP24 Missense_Mutation p.D384G 0.05 deleterious(0.04) probably_damaging(0.992) TCGA-ED-A4XI-01 1 67436525 67436525 T C MIER1 Silent p.P269P 0.09 TCGA-ED-A4XI-01 1 71418567 71418567 C A PTGER3 3'UTR 0.07 TCGA-ED-A4XI-01 1 85279510 85279510 G A LPAR3 3'UTR 0.13 TCGA-ED-A4XI-01 1 89578243 89578243 A T GBP2 Missense_Mutation p.F425Y 0.12 tolerated(0.79) benign(0.089) TCGA-ED-A4XI-01 1 91784929 91784929 T C HFM1 Silent p.L867L 0.16 TCGA-ED-A4XI-01 1 92711222 92711222 C A C1orf146 Missense_Mutation p.N178K 0.19 tolerated_low_confidence(0.09) benign(0.173) TCGA-ED-A4XI-01 20 20582430 20582430 C T RALGAPA2 Missense_Mutation p.R700Q 0.17 tolerated(0.16) benign(0.007) TCGA-ED-A4XI-01 20 30536608 30536608 T C PDRG1 Intron 0.09 TCGA-ED-A4XI-01 20 61511798 61511798 A C DIDO1 Missense_Mutation p.V1837G 0.10 benign(0.002) TCGA-ED-A4XI-01 20 61511821 61511821 A G DIDO1 Silent p.S1829S 0.10 TCGA-ED-A4XI-01 21 31797785 31797785 G A KRTAP13-3 Missense_Mutation p.P149L 0.09 deleterious(0.01) probably_damaging(0.977) TCGA-ED-A4XI-01 21 38117042 38117042 T C SIM2 Missense_Mutation p.F394S 0.10 tolerated(0.05) possibly_damaging(0.457) TCGA-ED-A4XI-01 21 45194153 45194153 T C CSTB Missense_Mutation p.E76G 0.07 tolerated(0.05) probably_damaging(0.956) TCGA-ED-A4XI-01 22 35942929 35942929 C G RASD2 Missense_Mutation p.L25V 0.12 deleterious(0) probably_damaging(0.956) TCGA-ED-A4XI-01 22 39436935 39436935 A G APOBEC3F 5'UTR 0.24 TCGA-ED-A4XI-01 22 46787590 46787590 C T CELSR1 Missense_Mutation p.G2030S 0.29 deleterious(0) probably_damaging(0.998) TCGA-ED-A4XI-01 2 112686826 112686826 T A MERTK Missense_Mutation p.M64K 0.11 deleterious_low_confidence(0.02) benign(0.021) TCGA-ED-A4XI-01 2 166852533 166852533 G A SCN1A Missense_Mutation p.P1524L 0.09 deleterious(0) probably_damaging(0.982) TCGA-ED-A4XI-01 2 166852534 166852534 G T SCN1A Missense_Mutation p.P1524T 0.09 deleterious(0) probably_damaging(0.948) TCGA-ED-A4XI-01 2 169791714 169791714 G A ABCB11 Silent p.L1012L 0.10 TCGA-ED-A4XI-01 2 170428398 170428398 C T FASTKD1 Missense_Mutation p.D48N 0.22 tolerated(0.44) benign(0.015) TCGA-ED-A4XI-01 2 172411309 172411309 A G CYBRD1 Missense_Mutation p.D278G 0.13 deleterious_low_confidence(0) possibly_damaging(0.521) TCGA-ED-A4XI-01 2 189898782 189898782 T C COL5A2 3'UTR 0.12 TCGA-ED-A4XI-01 2 190531503 190531503 G T ASNSD1 Silent p.L215L 0.11 TCGA-ED-A4XI-01 2 207174580 207174580 A G ZDBF2 Silent p.V1776V 0.04 TCGA-ED-A4XI-01 2 207175044 207175044 G T ZDBF2 Missense_Mutation p.G1931V 0.14 tolerated(0.09) benign(0) TCGA-ED-A4XI-01 2 217542924 217542924 G T IGFBP5 Missense_Mutation p.L200M 0.03 tolerated(0.08) possibly_damaging(0.649) TCGA-ED-A4XI-01 2 241390200 241390200 A C AC110619.2 Missense_Mutation p.N69K 0.09 possibly_damaging(0.607) TCGA-ED-A4XI-01 2 33740196 33740196 A G RASGRP3 5'UTR 0.08 TCGA-ED-A4XI-01 2 58453916 58453916 T C FANCL Missense_Mutation p.M74V 0.04 deleterious(0.01) benign(0.039) TCGA-ED-A4XI-01 2 71629093 71629093 A G ZNF638 Missense_Mutation p.E902G 0.16 deleterious(0.01) possibly_damaging(0.765) TCGA-ED-A4XI-01 2 84921530 84921530 G A DNAH6 Missense_Mutation p.E2484K 0.08 deleterious(0) probably_damaging(0.929) TCGA-ED-A4XI-01 2 99237842 99237842 C G MGAT4A 3'UTR 0.05 TCGA-ED-A4XI-01 3 130422686 130422686 T C PIK3R4 Silent p.K993K 0.04 TCGA-ED-A4XI-01 3 139292479 139292479 C T NMNAT3 Missense_Mutation p.G76S 0.11 tolerated(0.34) benign(0.062) TCGA-ED-A4XI-01 3 184294923 184294923 C A EPHB3 Missense_Mutation p.P436T 0.10 tolerated(0.1) benign(0.262) TCGA-ED-A4XI-01 3 190030766 190030766 T C CLDN1 Missense_Mutation p.I95V 0.08 tolerated(0.5) benign(0.065) TCGA-ED-A4XI-01 3 194081707 194081707 G A LRRC15 Silent p.Y28Y 0.18 TCGA-ED-A4XI-01 3 27350422 27350422 T G NEK10 Silent p.A237A 0.04 TCGA-ED-A4XI-01 3 48266103 48266103 G A CAMP Missense_Mutation p.R110Q 0.14 tolerated(1) benign(0.017) TCGA-ED-A4XI-01 3 49680416 49680416 A G BSN Missense_Mutation p.K450R 0.07 unknown(0) TCGA-ED-A4XI-01 3 49720037 49720037 T C APEH Missense_Mutation p.M584T 0.17 tolerated(0.21) benign(0.027) TCGA-ED-A4XI-01 3 50645332 50645332 C A CISH Missense_Mutation p.Q178H 0.07 deleterious(0.02) possibly_damaging(0.907) TCGA-ED-A4XI-01 3 52441262 52441262 A C BAP1 Missense_Mutation p.F170V 0.14 deleterious(0) probably_damaging(0.995) TCGA-ED-A4XI-01 3 52847391 52847392 GG - ITIH4 3'UTR 0.18 TCGA-ED-A4XI-01 3 78683082 78683082 T G ROBO1 Intron 0.14 TCGA-ED-A4XI-01 4 119947795 119947795 A G SYNPO2 Missense_Mutation p.I91V 0.11 tolerated(0.38) benign(0.005) TCGA-ED-A4XI-01 4 123814211 123814211 T C NUDT6 Silent p.E241E 0.05 TCGA-ED-A4XI-01 4 1244695 1244695 A G CTBP1 5'Flank 0.14 TCGA-ED-A4XI-01 4 177113883 177113883 A C SPATA4 Missense_Mutation p.S195A 0.11 deleterious(0.01) possibly_damaging(0.765) TCGA-ED-A4XI-01 4 187073131 187073131 A G FAM149A Silent p.K6K 0.04 TCGA-ED-A4XI-01 4 3240242 3240242 T A HTT Missense_Mutation p.F2987Y 0.08 possibly_damaging(0.861) TCGA-ED-A4XI-01 4 39780009 39780009 A G UBE2K Silent p.K186K 0.06 TCGA-ED-A4XI-01 4 48116411 48116411 T C TXK Missense_Mutation p.I9V 0.19 tolerated_low_confidence(0.11) benign(0.005) TCGA-ED-A4XI-01 4 79808426 79808426 A G BMP2K Missense_Mutation p.I684V 0.11 tolerated_low_confidence(0.56) unknown(0) TCGA-ED-A4XI-01 5 129520025 129520025 A G CHSY3 Missense_Mutation p.K397R 0.16 deleterious(0) probably_damaging(1) TCGA-ED-A4XI-01 5 135277110 135277110 C T FBXL21 RNA 0.04 TCGA-ED-A4XI-01 5 137893621 137893621 T C HSPA9 Missense_Mutation p.I524V 0.15 deleterious_low_confidence(0.04) probably_damaging(0.992) TCGA-ED-A4XI-01 5 140187738 140187738 C A PCDHA4 Silent p.G322G 0.08 TCGA-ED-A4XI-01 5 140203713 140203713 G A PCDHA5 Splice_Site p.X784_splice 0.08 TCGA-ED-A4XI-01 5 141314143 141314143 A T KIAA0141 Missense_Mutation p.N381Y 0.08 deleterious(0.02) possibly_damaging(0.879) TCGA-ED-A4XI-01 5 145616906 145616906 C T RBM27 Missense_Mutation p.P397L 0.04 tolerated_low_confidence(0.1) benign(0.014) TCGA-ED-A4XI-01 5 154311099 154311099 C T GEMIN5 Missense_Mutation p.A234T 0.18 tolerated(1) benign(0.004) TCGA-ED-A4XI-01 5 16067841 16067841 A C MARCH11 Missense_Mutation p.N316K 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-ED-A4XI-01 5 16465870 16465870 A T ZNF622 5'UTR 0.09 TCGA-ED-A4XI-01 5 96215831 96215831 A G ERAP2 Missense_Mutation p.I148V 0.12 tolerated(0.14) benign(0.309) TCGA-ED-A4XI-01 6 124979397 124979397 A T NKAIN2 Silent p.P113P 0.05 TCGA-ED-A4XI-01 6 138629875 138629875 G C KIAA1244 Splice_Site p.X1325_splice 0.05 TCGA-ED-A4XI-01 6 152638095 152638095 A G SYNE1 Silent p.N5533N 0.09 TCGA-ED-A4XI-01 6 159457832 159457832 C T TAGAP Missense_Mutation p.R408Q 0.11 tolerated(1) benign(0.001) TCGA-ED-A4XI-01 6 167550283 167550283 T C CCR6 Missense_Mutation p.Y189H 0.17 deleterious(0) benign(0.348) TCGA-ED-A4XI-01 6 26376781 26376781 C A BTN3A2 3'UTR 0.22 TCGA-ED-A4XI-01 6 3106115 3106115 A G RIPK1 Missense_Mutation p.Y469C 0.05 tolerated(0.15) benign(0.016) TCGA-ED-A4XI-01 6 31079842 31079842 C T C6orf15 Nonsense_Mutation p.W98* 0.17 TCGA-ED-A4XI-01 7 135122994 135122994 A - CNOT4 Frame_Shift_Del p.F29Sfs*50 0.14 TCGA-ED-A4XI-01 7 138818602 138818602 A G TTC26 5'UTR 0.08 TCGA-ED-A4XI-01 7 18688120 18688120 G A HDAC9 Silent p.L427L 0.14 TCGA-ED-A4XI-01 7 540840 540840 T C PDGFA Missense_Mutation p.K165E 0.14 tolerated(0.06) benign(0.326) TCGA-ED-A4XI-01 7 57528611 57528611 T A ZNF716 Nonsense_Mutation p.C148* 0.12 TCGA-ED-A4XI-01 8 113348909 113348909 C G CSMD3 Missense_Mutation p.E2331Q 0.21 deleterious(0) probably_damaging(0.995) TCGA-ED-A4XI-01 8 126030343 126030343 T G SQLE Missense_Mutation p.L416R 0.15 deleterious(0) probably_damaging(0.997) TCGA-ED-A4XI-01 8 22006415 22006415 C T LGI3 Missense_Mutation p.G302D 0.20 deleterious(0.02) probably_damaging(1) TCGA-ED-A4XI-01 8 27144950 27144950 G A TRIM35 3'UTR 0.17 TCGA-ED-A4XI-01 8 89180168 89180168 C A MMP16 Nonsense_Mutation p.E147* 0.05 TCGA-ED-A4XI-01 9 103271393 103271393 T C TMEFF1 Missense_Mutation p.I138T 0.22 deleterious(0.04) benign(0.026) TCGA-ED-A4XI-01 9 117093116 117093116 G A ORM2 Missense_Mutation p.R101Q 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-ED-A4XI-01 9 123210343 123210343 T C CDK5RAP2 Missense_Mutation p.Y952C 0.13 tolerated(0.18) probably_damaging(0.926) TCGA-ED-A4XI-01 9 129458735 129458735 C T LMX1B 3'UTR 0.21 TCGA-ED-A4XI-01 9 135698618 135698618 A T AK8 Missense_Mutation p.L288Q 0.08 deleterious(0) probably_damaging(1) TCGA-ED-A4XI-01 9 139313081 139313081 C G PMPCA Silent p.P355P 0.07 TCGA-ED-A4XI-01 9 15471262 15471262 A G PSIP1 Intron 0.07 TCGA-ED-A4XI-01 9 35810501 35810501 C T SPAG8 Missense_Mutation p.E379K 0.09 tolerated(0.17) possibly_damaging(0.599) TCGA-ED-A4XI-01 9 35869767 35869767 A T OR13J1 Missense_Mutation p.L211Q 0.06 deleterious(0) probably_damaging(0.966) TCGA-ED-A4XI-01 9 82336795 82336795 A T TLE4 Missense_Mutation p.T660S 0.05 tolerated(0.7) probably_damaging(0.968) TCGA-ED-A4XI-01 X 102334164 102334164 C T NXF3 Missense_Mutation p.G455R 0.31 deleterious(0.02) probably_damaging(0.996) TCGA-ED-A4XI-01 X 118230575 118230575 G A KIAA1210 Missense_Mutation p.T383I 0.30 deleterious(0.03) probably_damaging(0.947) TCGA-ED-A4XI-01 X 13732414 13732414 A C TRAPPC2 3'Flank 0.60 TCGA-ED-A4XI-01 X 151093077 151093077 A T MAGEA4 Missense_Mutation p.E314V 0.08 deleterious(0.01) benign(0.032) TCGA-ED-A4XI-01 X 20146386 20146386 T A EIF1AX 3'UTR 0.11 TCGA-ED-A5KG-01 11 124294075 124294075 C T OR8B4 Silent p.E231E 0.05 TCGA-ED-A5KG-01 11 4967860 4967860 C A OR51A4 Silent p.L157L 0.05 TCGA-ED-A5KG-01 12 40715938 40715938 C T LRRK2 Missense_Mutation p.H1758Y 0.10 deleterious(0.01) benign(0.081) TCGA-ED-A5KG-01 16 22152958 22152958 A T VWA3A Silent p.S813S 0.08 TCGA-ED-A5KG-01 16 50106573 50106573 G T HEATR3 Silent p.V190V 0.06 TCGA-ED-A5KG-01 17 32483120 32483120 C T ASIC2 Silent p.K144K 0.07 TCGA-ED-A5KG-01 17 58235740 58235740 C T CA4 Missense_Mutation p.T226I 0.06 deleterious(0) probably_damaging(0.922) TCGA-ED-A5KG-01 17 76451796 76451796 C T DNAH17 Missense_Mutation p.G3353D 0.04 probably_damaging(0.999) TCGA-ED-A5KG-01 18 47390748 47390748 C A MYO5B Missense_Mutation p.R1202S 0.09 tolerated(0.06) possibly_damaging(0.792) TCGA-ED-A5KG-01 19 41743920 41743920 G A AXL Silent p.S285S 0.04 TCGA-ED-A5KG-01 19 44223141 44223141 G A IRGC Missense_Mutation p.R144H 0.43 deleterious(0.03) probably_damaging(0.956) TCGA-ED-A5KG-01 19 51961708 51961708 T A SIGLEC8 5'UTR 0.12 TCGA-ED-A5KG-01 19 9024146 9024146 A T MUC16 Missense_Mutation p.S12376T 0.05 benign(0.19) TCGA-ED-A5KG-01 1 152692878 152692878 T C C1orf68 3'UTR 0.04 TCGA-ED-A5KG-01 1 15909713 15909713 T G AGMAT Silent p.A150A 0.15 TCGA-ED-A5KG-01 1 205041630 205041630 C A CNTN2 Silent p.G917G 0.08 TCGA-ED-A5KG-01 1 237947093 237947093 G A RYR2 Silent p.T4027T 0.06 TCGA-ED-A5KG-01 1 74507289 74507289 A T LRRIQ3 Silent p.V442V 0.08 TCGA-ED-A5KG-01 20 36031248 36031248 C G SRC Missense_Mutation p.T456S 0.08 deleterious(0.04) benign(0.366) TCGA-ED-A5KG-01 22 45595761 45595761 G A KIAA0930 Silent p.D341D 0.07 TCGA-ED-A5KG-01 2 140995842 140995842 G A LRP1B Missense_Mutation p.P4480L 0.05 possibly_damaging(0.713) TCGA-ED-A5KG-01 2 179584914 179584914 C G TTN Missense_Mutation p.E7819Q 0.04 TCGA-ED-A5KG-01 2 183703307 183703307 C T FRZB Silent p.K209K 0.04 TCGA-ED-A5KG-01 3 81635291 81635292 - C GBE1 Frame_Shift_Ins p.G430Wfs*3 0.10 TCGA-ED-A5KG-01 5 33891885 33891885 T C ADAMTS12 Missense_Mutation p.Y26C 0.06 tolerated_low_confidence(0.12) benign(0.001) TCGA-ED-A5KG-01 5 37016248 37016248 C T NIPBL Silent p.L1584L 0.12 TCGA-ED-A5KG-01 6 29395394 29395394 C T OR11A1 Missense_Mutation p.E9K 0.06 tolerated(0.15) benign(0.001) TCGA-ED-A5KG-01 7 135376053 135376053 G T SLC13A4 Missense_Mutation p.L447M 0.05 tolerated(0.29) benign(0.027) TCGA-ED-A5KG-01 7 141770867 141770867 G A MGAM Intron 0.12 TCGA-ED-A5KG-01 7 75511359 75511359 G T RHBDD2 Missense_Mutation p.D131Y 0.08 deleterious(0) probably_damaging(0.976) TCGA-ED-A5KG-01 8 103572783 103572783 C A ODF1 Silent p.R142R 0.05 TCGA-ED-A5KG-01 8 2949136 2949136 G A CSMD1 Missense_Mutation p.T2396I 0.11 possibly_damaging(0.743) TCGA-ED-A5KG-01 X 31525469 31525469 G T DMD Silent p.V2773V 0.05 TCGA-ED-A5KG-01 X 49840450 49840450 G A CLCN5 Missense_Mutation p.G139D 0.04 deleterious(0) probably_damaging(1) TCGA-ED-A627-01 12 49427679 49427679 C T KMT2D Silent p.Q3603Q 0.14 TCGA-ED-A627-01 15 74425231 74425231 C T ISLR2 Missense_Mutation p.P46S 0.06 deleterious(0) probably_damaging(0.996) TCGA-ED-A627-01 17 30469471 30469485 CCGCCGCCGCCGCCG - AC090616.2 In_Frame_Del p.R85_R89del 0.36 TCGA-ED-A627-01 5 131647904 131647904 G T SLC22A4 Silent p.L148L 0.06 TCGA-ED-A627-01 9 137968703 137968703 G T OLFM1 Intron 0.05 TCGA-ED-A66X-01 10 129913861 129913861 C T MKI67 Missense_Mutation p.A271T 0.23 tolerated(1) benign(0) TCGA-ED-A66X-01 10 20432307 20432307 A C PLXDC2 Missense_Mutation p.S209R 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-ED-A66X-01 10 68686790 68686790 G T LRRTM3 Missense_Mutation p.R39M 0.10 deleterious(0) probably_damaging(0.997) TCGA-ED-A66X-01 11 5461996 5461996 A G OR51I1 Missense_Mutation p.V250A 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-ED-A66X-01 11 74880711 74880711 G A SLCO2B1 Missense_Mutation p.G228E 0.09 deleterious(0) probably_damaging(0.999) TCGA-ED-A66X-01 11 7949333 7949333 G A OR10A6 Nonsense_Mutation p.R293* 0.09 TCGA-ED-A66X-01 12 27623645 27623645 G T SMCO2 Missense_Mutation p.K27N 0.11 deleterious(0.02) benign(0.014) TCGA-ED-A66X-01 12 40921869 40921869 G A MUC19 Intron 0.33 TCGA-ED-A66X-01 12 4724998 4724998 C T AKAP3 Silent p.S823S 0.15 TCGA-ED-A66X-01 12 64057564 64057564 G A DPY19L2 Missense_Mutation p.R142W 0.12 deleterious(0) probably_damaging(0.958) TCGA-ED-A66X-01 12 93170633 93170633 A G EEA1 Missense_Mutation p.V1367A 0.16 deleterious(0) probably_damaging(0.992) TCGA-ED-A66X-01 13 37679668 37679668 C T CSNK1A1L 5'UTR 0.13 TCGA-ED-A66X-01 14 100705845 100705845 G T YY1 Silent p.P88P 0.12 TCGA-ED-A66X-01 14 20876412 20876412 T C TEP1 Missense_Mutation p.K63E 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.582) TCGA-ED-A66X-01 15 30010303 30010303 T C TJP1 Missense_Mutation p.K1299R 0.25 tolerated_low_confidence(0.15) benign(0.039) TCGA-ED-A66X-01 15 30010304 30010304 T A TJP1 Nonsense_Mutation p.K1299* 0.24 TCGA-ED-A66X-01 15 43164898 43164898 G A TTBK2 Missense_Mutation p.T43I 0.19 deleterious(0.04) probably_damaging(0.988) TCGA-ED-A66X-01 15 65497772 65497772 T C CILP Missense_Mutation p.S153G 0.14 tolerated(0.69) benign(0.002) TCGA-ED-A66X-01 15 78562999 78562999 G A DNAJA4 Missense_Mutation p.R127Q 0.19 tolerated(0.17) probably_damaging(0.952) TCGA-ED-A66X-01 17 35804825 35804825 T C TADA2A Silent p.L187L 0.13 TCGA-ED-A66X-01 17 39684492 39684492 G A KRT19 Missense_Mutation p.S3F 0.30 deleterious(0) unknown(0) TCGA-ED-A66X-01 17 4877747 4877747 T C CAMTA2 Missense_Mutation p.K673R 0.39 tolerated(1) possibly_damaging(0.593) TCGA-ED-A66X-01 17 59821818 59821818 G A BRIP1 Silent p.D744D 0.16 TCGA-ED-A66X-01 17 80049392 80049392 C T FASN Missense_Mutation p.V400M 0.09 deleterious(0) probably_damaging(0.972) TCGA-ED-A66X-01 17 8170947 8170947 G A PFAS Missense_Mutation p.G1116S 0.13 deleterious(0) probably_damaging(1) TCGA-ED-A66X-01 19 38993172 38993172 C T RYR1 Missense_Mutation p.A2547V 0.09 benign(0.038) TCGA-ED-A66X-01 19 51961351 51961351 T C SIGLEC8 Silent p.Q97Q 0.17 TCGA-ED-A66X-01 19 6495427 6495427 C T TUBB4A Silent p.L361L 0.20 TCGA-ED-A66X-01 1 153615718 153615718 G A CHTOP Missense_Mutation p.R140Q 0.09 tolerated(0.46) unknown(0) TCGA-ED-A66X-01 1 158908870 158908870 A C PYHIN1 Missense_Mutation p.K138Q 0.09 deleterious(0) probably_damaging(0.963) TCGA-ED-A66X-01 1 16059140 16059140 C T PLEKHM2 Missense_Mutation p.P947S 0.38 deleterious(0.03) benign(0.371) TCGA-ED-A66X-01 1 165532817 165532817 G A LRRC52 Missense_Mutation p.R233Q 0.06 tolerated(0.13) benign(0.048) TCGA-ED-A66X-01 1 17752173 17752173 G A RCC2 Silent p.Y129Y 0.29 TCGA-ED-A66X-01 1 180907742 180907742 C T KIAA1614 Missense_Mutation p.T938M 0.18 tolerated(0.37) benign(0.046) TCGA-ED-A66X-01 1 185125983 185125983 A G TRMT1L 5'UTR 0.19 TCGA-ED-A66X-01 1 217955552 217955552 C T SPATA17 Missense_Mutation p.R254C 0.06 deleterious(0) probably_damaging(1) TCGA-ED-A66X-01 1 231349708 231349708 C G TRIM67 Silent p.L757L 0.13 TCGA-ED-A66X-01 1 245530501 245530501 G A KIF26B Silent p.A277A 0.08 TCGA-ED-A66X-01 1 248551768 248551768 C T OR2T6 Missense_Mutation p.P287S 0.23 deleterious(0) probably_damaging(0.984) TCGA-ED-A66X-01 20 13279761 13279761 C T ISM1 Silent p.D350D 0.12 TCGA-ED-A66X-01 20 37630379 37630379 C T DHX35 Missense_Mutation p.R217W 0.12 tolerated(0.18) benign(0.002) TCGA-ED-A66X-01 21 38592566 38592566 C T DSCR3 3'Flank 0.15 TCGA-ED-A66X-01 22 22764552 22764552 G A IGLV1-40 Silent p.G98G 0.09 TCGA-ED-A66X-01 2 211069378 211069379 - T ACADL Frame_Shift_Ins p.I266Nfs*6 0.17 TCGA-ED-A66X-01 3 121630500 121630500 C A SLC15A2 Missense_Mutation p.Q139K 0.21 tolerated(0.93) benign(0.005) TCGA-ED-A66X-01 3 130107781 130107781 G A COL6A5 Silent p.A740A 0.34 TCGA-ED-A66X-01 3 134670256 134670256 G A EPHB1 Missense_Mutation p.R56H 0.15 tolerated(0.34) possibly_damaging(0.751) TCGA-ED-A66X-01 3 142103424 142103424 G A XRN1 Missense_Mutation p.R815C 0.14 tolerated(0.2) benign(0.011) TCGA-ED-A66X-01 3 195487851 195487851 A T MUC4 Missense_Mutation p.S4918T 0.12 possibly_damaging(0.483) TCGA-ED-A66X-01 3 38791656 38791656 T C SCN10A Missense_Mutation p.K592R 0.15 tolerated(0.64) benign(0.002) TCGA-ED-A66X-01 4 46976276 46976276 A G GABRA4 Missense_Mutation p.S232P 0.14 deleterious(0.01) probably_damaging(1) TCGA-ED-A66X-01 5 1219158 1219158 C T SLC6A19 Silent p.G438G 0.10 TCGA-ED-A66X-01 5 14749332 14749332 A C ANKH Missense_Mutation p.I257M 0.14 deleterious(0) probably_damaging(0.977) TCGA-ED-A66X-01 5 167675304 167675304 C T TENM2 Missense_Mutation p.P2454S 0.10 deleterious(0) probably_damaging(0.999) TCGA-ED-A66X-01 5 88027559 88027559 G A MEF2C Missense_Mutation p.T284M 0.05 tolerated(0.7) possibly_damaging(0.765) TCGA-ED-A66X-01 6 130761733 130761733 C T TMEM200A Missense_Mutation p.R56W 0.09 deleterious(0) probably_damaging(0.993) TCGA-ED-A66X-01 6 166912106 166912106 C T RPS6KA2 Missense_Mutation p.D221N 0.09 tolerated(0.35) benign(0.042) TCGA-ED-A66X-01 6 28501879 28501879 C T GPX5 Missense_Mutation p.R201W 0.11 deleterious(0.03) benign(0.006) TCGA-ED-A66X-01 6 31515977 31515977 G A NFKBIL1 Missense_Mutation p.R32H 0.12 deleterious(0.03) benign(0.024) TCGA-ED-A66X-01 6 35210863 35210863 C A SCUBE3 Missense_Mutation p.L587I 0.27 tolerated(0.09) possibly_damaging(0.656) TCGA-ED-A66X-01 7 72891607 72891607 G A BAZ1B Silent p.F728F 0.26 TCGA-ED-A66X-01 8 100711796 100711796 G T VPS13B Silent p.L2055L 0.06 TCGA-ED-A66X-01 8 109240530 109240530 C G EIF3E Missense_Mutation p.D230H 0.10 deleterious(0.03) probably_damaging(0.992) TCGA-ED-A66X-01 9 73477842 73477842 G A TRPM3 Silent p.G148G 0.14 TCGA-ED-A66Y-01 10 123276885 123276885 C T FGFR2 Intron 0.93 TCGA-ED-A66Y-01 10 17277885 17277885 A T VIM Missense_Mutation p.R424W 0.44 deleterious(0) probably_damaging(0.967) TCGA-ED-A66Y-01 10 29812533 29812533 C T SVIL Missense_Mutation p.A1004T 0.52 tolerated_low_confidence(0.6) benign(0.001) TCGA-ED-A66Y-01 10 73768075 73768075 G A CHST3 Missense_Mutation p.R429H 0.48 deleterious(0) probably_damaging(1) TCGA-ED-A66Y-01 11 103349989 103349989 T C DYNC2H1 3'Flank 0.47 TCGA-ED-A66Y-01 11 55703708 55703708 G A OR5I1 Missense_Mutation p.L57F 0.48 deleterious(0.01) probably_damaging(0.994) TCGA-ED-A66Y-01 11 55703709 55703709 G T OR5I1 Missense_Mutation p.H56Q 0.47 tolerated(0.51) benign(0.05) TCGA-ED-A66Y-01 11 58034403 58034403 C T OR10W1 3'UTR 0.47 TCGA-ED-A66Y-01 11 60774061 60774061 C T CD6 Missense_Mutation p.A22V 0.35 tolerated(0.07) benign(0.219) TCGA-ED-A66Y-01 11 62038372 62038372 G A SCGB2A2 Silent p.L25L 0.41 TCGA-ED-A66Y-01 12 1943454 1943454 C T LRTM2 Missense_Mutation p.A227V 0.50 tolerated(0.28) benign(0.07) TCGA-ED-A66Y-01 12 19436617 19436617 T C PLEKHA5 Missense_Mutation p.S573P 0.43 tolerated(0.07) benign(0.008) TCGA-ED-A66Y-01 12 56397423 56397423 A G SUOX Missense_Mutation p.I84V 0.37 tolerated(1) benign(0.004) TCGA-ED-A66Y-01 12 85521764 85521764 A G LRRIQ1 Missense_Mutation p.I1388V 0.48 tolerated(0.61) benign(0.007) TCGA-ED-A66Y-01 13 31715296 31715296 A C HSPH1 Nonsense_Mutation p.L606* 0.48 TCGA-ED-A66Y-01 13 35806707 35806707 C T NBEA Silent p.F1909F 0.45 TCGA-ED-A66Y-01 13 48951053 48951053 G A RB1 Splice_Site p.X406_splice 0.87 TCGA-ED-A66Y-01 13 86370519 86370519 C G SLITRK6 Missense_Mutation p.G42A 0.83 tolerated(0.05) benign(0.199) TCGA-ED-A66Y-01 14 105716721 105716721 G T BTBD6 Missense_Mutation p.E390D 0.06 deleterious(0) probably_damaging(0.986) TCGA-ED-A66Y-01 14 21270068 21270068 A G RNASE1 Missense_Mutation p.C54R 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-ED-A66Y-01 14 67147861 67147861 G A GPHN Missense_Mutation p.R34H 0.52 deleterious(0.03) probably_damaging(0.977) TCGA-ED-A66Y-01 15 29429365 29429365 G A FAM189A1 Silent p.P221P 0.66 TCGA-ED-A66Y-01 15 42052603 42052603 G A MGA Missense_Mutation p.R2425H 0.63 deleterious(0) probably_damaging(0.999) TCGA-ED-A66Y-01 16 58074513 58074513 A G MMP15 Missense_Mutation p.N274S 0.76 tolerated(1) benign(0.001) TCGA-ED-A66Y-01 17 27309008 27309008 G T SEZ6 Silent p.I35I 0.12 TCGA-ED-A66Y-01 17 39595474 39595474 A T KRT38 Missense_Mutation p.L238H 0.40 deleterious(0) probably_damaging(0.995) TCGA-ED-A66Y-01 17 7798720 7798720 G A CHD3 Missense_Mutation p.A582T 0.52 possibly_damaging(0.483) TCGA-ED-A66Y-01 18 5290910 5290910 C - ZBTB14 Frame_Shift_Del p.A433Qfs*14 0.34 TCGA-ED-A66Y-01 18 5419718 5419718 C A EPB41L3 Nonsense_Mutation p.E500* 0.58 TCGA-ED-A66Y-01 19 10506763 10506763 C T CDC37 Silent p.V73V 0.32 TCGA-ED-A66Y-01 19 11132515 11132515 G A SMARCA4 Missense_Mutation p.G911S 0.34 probably_damaging(0.983) TCGA-ED-A66Y-01 19 11577461 11577461 T C ELAVL3 Missense_Mutation p.D64G 0.49 deleterious(0.01) benign(0.187) TCGA-ED-A66Y-01 19 16059854 16059854 A T OR10H4 Missense_Mutation p.N13Y 0.47 deleterious(0) benign(0.017) TCGA-ED-A66Y-01 19 17091417 17091417 C T CPAMD8 Missense_Mutation p.G539D 0.46 deleterious(0) probably_damaging(0.999) TCGA-ED-A66Y-01 19 35435350 35435350 A G ZNF30 Missense_Mutation p.S495G 0.49 tolerated(0.13) benign(0.388) TCGA-ED-A66Y-01 19 56223263 56223263 T A NLRP9 Missense_Mutation p.R916W 0.60 deleterious(0.01) possibly_damaging(0.849) TCGA-ED-A66Y-01 1 153362537 153362537 G A S100A8 3'UTR 0.29 TCGA-ED-A66Y-01 1 158449817 158449817 T A OR10R2 Silent p.V50V 0.42 TCGA-ED-A66Y-01 1 167887394 167887394 G T MPC2 3'UTR 0.07 TCGA-ED-A66Y-01 1 179815558 179815558 C T TOR1AIP2 Missense_Mutation p.G354E 0.41 deleterious(0.03) probably_damaging(0.994) TCGA-ED-A66Y-01 1 196274416 196274416 A C KCNT2 Missense_Mutation p.M848R 0.35 deleterious(0) possibly_damaging(0.706) TCGA-ED-A66Y-01 1 206858647 206858647 A C MAPKAPK2 Missense_Mutation p.T25P 0.38 tolerated_low_confidence(0.29) unknown(0) TCGA-ED-A66Y-01 1 22172730 22172730 G A HSPG2 Missense_Mutation p.R2779W 0.06 probably_damaging(0.999) TCGA-ED-A66Y-01 1 32936203 32936203 G T ZBTB8B 5'UTR 0.18 TCGA-ED-A66Y-01 1 36559043 36559043 A G ADPRHL2 3'UTR 0.41 TCGA-ED-A66Y-01 1 3753156 3753156 T C CEP104 Missense_Mutation p.D407G 0.21 tolerated(0.13) benign(0.002) TCGA-ED-A66Y-01 1 39802991 39802991 G T MACF1 Intron 0.06 TCGA-ED-A66Y-01 1 42620502 42620502 C T GUCA2B Missense_Mutation p.A81V 0.70 tolerated(0.06) benign(0.355) TCGA-ED-A66Y-01 20 36151185 36151185 G A NNAT 3'UTR 0.52 TCGA-ED-A66Y-01 20 36431330 36431330 G T CTNNBL1 Nonsense_Mutation p.E365* 0.45 TCGA-ED-A66Y-01 20 60895866 60895866 G C LAMA5 Missense_Mutation p.R2193G 0.35 benign(0.001) TCGA-ED-A66Y-01 21 34958454 34958454 G T DONSON Missense_Mutation p.P146T 0.32 tolerated(0.14) benign(0.005) TCGA-ED-A66Y-01 22 21470283 21470283 T C KB-1592A4.15 RNA 0.21 TCGA-ED-A66Y-01 22 31535824 31535824 C T PLA2G3 Intron 0.50 TCGA-ED-A66Y-01 22 47033858 47033858 G C GRAMD4 Splice_Site p.X95_splice 0.08 TCGA-ED-A66Y-01 2 167149749 167149749 A T SCN9A Missense_Mutation p.Y367N 0.35 deleterious(0) probably_damaging(1) TCGA-ED-A66Y-01 2 21249795 21249795 A G APOB Silent p.A703A 0.53 TCGA-ED-A66Y-01 2 219114171 219114171 A G ARPC2 Missense_Mutation p.H254R 0.37 deleterious(0) probably_damaging(1) TCGA-ED-A66Y-01 2 230657707 230657707 T A TRIP12 Nonsense_Mutation p.R1300* 0.60 TCGA-ED-A66Y-01 2 44993577 44993577 G T CAMKMT Silent p.A257A 0.55 TCGA-ED-A66Y-01 2 61430400 61430400 T G USP34 Splice_Site p.X3129_splice 0.63 TCGA-ED-A66Y-01 2 71206977 71206977 G T ANKRD53 Missense_Mutation p.A202S 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-ED-A66Y-01 2 71360572 71360572 G T MPHOSPH10 Missense_Mutation p.A212S 0.57 tolerated(0.36) benign(0.054) TCGA-ED-A66Y-01 3 101520122 101520122 G A NXPE3 Missense_Mutation p.S46N 0.28 tolerated(0.46) benign(0.001) TCGA-ED-A66Y-01 3 119134792 119134792 C A ARHGAP31 Nonsense_Mutation p.S1339* 0.35 TCGA-ED-A66Y-01 3 122271265 122271265 C T PARP9 Silent p.Q404Q 0.60 TCGA-ED-A66Y-01 3 123166435 123166435 G T ADCY5 Missense_Mutation p.P320T 0.29 tolerated(0.64) benign(0.024) TCGA-ED-A66Y-01 3 154860094 154860094 A T MME Missense_Mutation p.K388M 0.27 deleterious(0) probably_damaging(0.994) TCGA-ED-A66Y-01 3 15643533 15643533 G T BTD Intron 0.21 TCGA-ED-A66Y-01 3 25654029 25654029 T C TOP2B Missense_Mutation p.K1250E 0.59 tolerated(0.34) possibly_damaging(0.566) TCGA-ED-A66Y-01 3 36874434 36874434 G A TRANK1 Missense_Mutation p.R2170W 0.06 deleterious(0.02) possibly_damaging(0.696) TCGA-ED-A66Y-01 3 50609148 50609148 G A HEMK1 Missense_Mutation p.S79N 0.57 tolerated(0.07) benign(0.009) TCGA-ED-A66Y-01 3 52415808 52415808 G T DNAH1 Silent p.V2587V 0.29 TCGA-ED-A66Y-01 3 52415809 52415809 G C DNAH1 Missense_Mutation p.G2588R 0.29 probably_damaging(0.994) TCGA-ED-A66Y-01 3 52448577 52448577 A G PHF7 Missense_Mutation p.N54D 0.51 tolerated(0.18) benign(0.004) TCGA-ED-A66Y-01 4 166238988 166238988 A G KLHL2 Silent p.A544A 0.35 TCGA-ED-A66Y-01 4 178911809 178911809 A G LINC01098 3'UTR 0.34 TCGA-ED-A66Y-01 4 83984336 83984336 G A COPS4 Missense_Mutation p.G275R 0.53 tolerated(0.77) benign(0.004) TCGA-ED-A66Y-01 4 86745 86745 C A Z95704.2 RNA 0.51 TCGA-ED-A66Y-01 5 128887587 128887587 A C ADAMTS19 Silent p.P447P 0.34 TCGA-ED-A66Y-01 5 132009824 132009824 G C IL4 Missense_Mutation p.D28H 0.44 deleterious(0.04) benign(0.003) TCGA-ED-A66Y-01 5 140262349 140262349 T A PCDHA13 Missense_Mutation p.S166T 0.49 deleterious_low_confidence(0) possibly_damaging(0.783) TCGA-ED-A66Y-01 5 140502767 140502767 T C PCDHB4 Missense_Mutation p.L396S 0.42 deleterious(0.05) benign(0.076) TCGA-ED-A66Y-01 5 140794859 140794859 G T PCDHGA10 Missense_Mutation p.C706F 0.51 deleterious_low_confidence(0) benign(0.301) TCGA-ED-A66Y-01 5 14270940 14270940 G A TRIO Missense_Mutation p.R55Q 0.61 benign(0.002) TCGA-ED-A66Y-01 5 15928320 15928320 A G FBXL7 Missense_Mutation p.D150G 0.39 tolerated(0.1) probably_damaging(0.994) TCGA-ED-A66Y-01 5 176899177 176899177 A G DBN1 Missense_Mutation p.L12P 0.48 deleterious_low_confidence(0.02) probably_damaging(0.955) TCGA-ED-A66Y-01 5 71493321 71493321 T A MAP1B Missense_Mutation p.M1380K 0.38 probably_damaging(0.972) TCGA-ED-A66Y-01 5 89756928 89756928 T C MBLAC2 3'UTR 0.49 TCGA-ED-A66Y-01 6 100010759 100010759 G T CCNC Nonsense_Mutation p.S33* 0.07 TCGA-ED-A66Y-01 6 105606476 105606476 T C POPDC3 Missense_Mutation p.R249G 0.60 deleterious(0) possibly_damaging(0.697) TCGA-ED-A66Y-01 6 130381199 130381199 A T L3MBTL3 Missense_Mutation p.N260Y 0.25 tolerated(0.15) benign(0.367) TCGA-ED-A66Y-01 6 154489242 154489242 G T IPCEF1 Missense_Mutation p.T306K 0.33 tolerated(0.81) benign(0.211) TCGA-ED-A66Y-01 6 155750073 155750073 C A NOX3 Nonsense_Mutation p.E334* 0.70 TCGA-ED-A66Y-01 6 38838323 38838323 C A DNAH8 Missense_Mutation p.N2108K 0.62 possibly_damaging(0.468) TCGA-ED-A66Y-01 6 56918222 56918222 G A KIAA1586 Missense_Mutation p.E309K 0.55 tolerated(0.19) benign(0.082) TCGA-ED-A66Y-01 6 65767551 65767551 T C EYS Missense_Mutation p.D698G 0.62 deleterious(0.01) benign(0.028) TCGA-ED-A66Y-01 6 85446614 85446614 G A TBX18 Missense_Mutation p.P538L 0.57 deleterious(0) probably_damaging(0.996) TCGA-ED-A66Y-01 7 102937995 102937995 C T PMPCB Missense_Mutation p.A30V 0.32 tolerated(0.28) benign(0.001) TCGA-ED-A66Y-01 7 105662822 105662822 T C CDHR3 Silent p.V668V 0.45 TCGA-ED-A66Y-01 7 117876162 117876162 A G ANKRD7 Missense_Mutation p.E179G 0.44 deleterious(0.01) benign(0.161) TCGA-ED-A66Y-01 7 20785063 20785063 T A ABCB5 Splice_Site p.X1143_splice 0.51 TCGA-ED-A66Y-01 7 31918700 31918700 G A PDE1C Missense_Mutation p.R172W 0.47 deleterious(0) probably_damaging(1) TCGA-ED-A66Y-01 7 73008143 73008143 C T MLXIPL 3'UTR 0.52 TCGA-ED-A66Y-01 8 17921966 17921967 - T ASAH1 Frame_Shift_Ins p.G169Rfs*21 0.31 TCGA-ED-A66Y-01 8 21894299 21894299 G T NPM2 3'UTR 0.42 TCGA-ED-A66Y-01 8 36788612 36788612 G T KCNU1 Silent p.R960R 0.42 TCGA-ED-A66Y-01 9 111625276 111625276 A G ACTL7A Missense_Mutation p.Y225C 0.37 deleterious(0.03) benign(0.017) TCGA-ED-A66Y-01 9 35682076 35682076 C T TPM2 3'UTR 0.26 TCGA-ED-A66Y-01 9 37762014 37762014 A C TRMT10B Missense_Mutation p.E29A 0.44 tolerated_low_confidence(0.1) benign(0.004) TCGA-ED-A66Y-01 9 5968170 5968170 C A KIAA2026 Missense_Mutation p.K687N 0.47 deleterious(0) probably_damaging(0.996) TCGA-ED-A66Y-01 9 77286750 77286752 AAA - RORB In_Frame_Del p.K387del 0.43 TCGA-ED-A66Y-01 9 968192 968192 T G DMRT1 3'UTR 0.52 TCGA-ED-A66Y-01 X 100104411 100104411 T C NOX1 Missense_Mutation p.Y434C 0.45 deleterious(0) probably_damaging(1) TCGA-ED-A66Y-01 X 129306277 129306277 G T RAB33A Nonsense_Mutation p.E81* 0.33 TCGA-ED-A66Y-01 X 150912332 150912332 C T CNGA2 Missense_Mutation p.R453C 0.33 deleterious(0.02) benign(0.027) TCGA-ED-A66Y-01 X 20181160 20181160 T A RPS6KA3 Splice_Site p.X589_splice 0.50 TCGA-ED-A66Y-01 X 48888982 48888982 C T TFE3 Missense_Mutation p.R405H 0.53 deleterious(0.01) possibly_damaging(0.522) TCGA-ED-A66Y-01 X 57618538 57618538 C T ZXDB Silent p.G19G 0.10 TCGA-ED-A66Y-01 X 70387139 70387139 A C NLGN3 Missense_Mutation p.N398H 0.48 deleterious(0) probably_damaging(0.974) TCGA-ED-A66Y-01 X 72297606 72297606 G A PABPC1L2A 3'UTR 0.53 TCGA-ED-A7PX-01 11 17631697 17631697 C T OTOG Missense_Mutation p.T1629I 0.15 probably_damaging(0.958) TCGA-ED-A7PX-01 11 5221116 5221116 C T OR51V1 Missense_Mutation p.R272H 0.41 deleterious(0.01) benign(0.26) TCGA-ED-A7PX-01 11 65687843 65687843 T G DRAP1 Missense_Mutation p.F80C 0.21 deleterious(0) probably_damaging(0.987) TCGA-ED-A7PX-01 11 86521764 86521764 C G PRSS23 3'UTR 0.34 TCGA-ED-A7PX-01 12 56495713 56495713 G T ERBB3 Missense_Mutation p.Q1301H 0.45 tolerated(0.23) benign(0) TCGA-ED-A7PX-01 12 64437335 64437335 G A SRGAP1 Missense_Mutation p.D261N 0.18 deleterious(0) probably_damaging(0.987) TCGA-ED-A7PX-01 13 37583904 37583904 C T SUPT20H Missense_Mutation p.A749T 0.04 tolerated(0.15) benign(0) TCGA-ED-A7PX-01 14 51196346 51196346 C A NIN Missense_Mutation p.R1991S 0.52 tolerated(0.09) probably_damaging(0.995) TCGA-ED-A7PX-01 14 65007431 65007431 A C HSPA2 5'UTR 0.78 TCGA-ED-A7PX-01 14 94245606 94245606 G A PRIMA1 Nonsense_Mutation p.R49* 0.56 TCGA-ED-A7PX-01 15 86124170 86124170 A T AKAP13 Silent p.G957G 0.29 TCGA-ED-A7PX-01 15 86124171 86124171 C T AKAP13 Nonsense_Mutation p.Q958* 0.27 TCGA-ED-A7PX-01 16 2369767 2369767 C T ABCA3 Missense_Mutation p.A230T 0.12 tolerated(0.22) benign(0.025) TCGA-ED-A7PX-01 16 85133752 85133752 G A FAM92B Missense_Mutation p.A249V 0.29 deleterious(0.01) benign(0.009) TCGA-ED-A7PX-01 16 89293980 89293980 G T ZNF778 Missense_Mutation p.K400N 0.05 deleterious(0) possibly_damaging(0.881) TCGA-ED-A7PX-01 17 3806509 3806509 G T P2RX1 Missense_Mutation p.T245N 0.48 tolerated(0.06) benign(0.024) TCGA-ED-A7PX-01 17 7145726 7145726 G A GABARAP 5'UTR 0.63 TCGA-ED-A7PX-01 18 15316546 15316546 A G RNU6-721P 3'Flank 0.46 TCGA-ED-A7PX-01 18 46163025 46163025 C G CTIF Missense_Mutation p.S74C 0.41 tolerated_low_confidence(0.06) possibly_damaging(0.646) TCGA-ED-A7PX-01 18 46163026 46163026 C A CTIF Silent p.S74S 0.41 TCGA-ED-A7PX-01 19 12996687 12996687 G A KLF1 Silent p.G119G 0.14 TCGA-ED-A7PX-01 19 58067687 58067687 G C ZNF550 Silent p.T13T 0.22 TCGA-ED-A7PX-01 20 29891217 29891217 G C DEFB116 Missense_Mutation p.P36R 0.17 tolerated(0.23) benign(0.149) TCGA-ED-A7PX-01 20 5935894 5935894 T A MCM8 Missense_Mutation p.H161Q 0.77 deleterious(0) probably_damaging(0.998) TCGA-ED-A7PX-01 2 10091937 10091937 C T GRHL1 5'UTR 0.38 TCGA-ED-A7PX-01 2 10091938 10091938 G T GRHL1 5'UTR 0.38 TCGA-ED-A7PX-01 2 101971822 101971823 - T CREG2 Frame_Shift_Ins p.N206Kfs*4 0.25 TCGA-ED-A7PX-01 2 231067440 231067440 T G SP110 Silent p.T301T 0.12 TCGA-ED-A7PX-01 3 52436639 52436640 - A BAP1 Frame_Shift_Ins p.I679Yfs*38 0.34 TCGA-ED-A7PX-01 4 141543809 141543809 G A TBC1D9 Missense_Mutation p.P1114L 0.43 tolerated(0.14) benign(0.022) TCGA-ED-A7PX-01 4 159790466 159790466 C T FNIP2 Missense_Mutation p.S893L 0.44 tolerated(0.07) benign(0.105) TCGA-ED-A7PX-01 4 8304197 8304197 G A HTRA3 Silent p.K353K 0.34 TCGA-ED-A7PX-01 5 139189306 139189306 C T PSD2 Missense_Mutation p.A94V 0.49 tolerated_low_confidence(0.11) benign(0.001) TCGA-ED-A7PX-01 5 140563725 140563725 G A PCDHB16 Missense_Mutation p.V531M 0.16 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-ED-A7PX-01 5 141358344 141358344 A G RNF14 Silent p.Q261Q 0.15 TCGA-ED-A7PX-01 5 153149816 153149816 T C GRIA1 Missense_Mutation p.M714T 0.38 deleterious(0) benign(0.232) TCGA-ED-A7PX-01 5 71757293 71757293 C T ZNF366 Missense_Mutation p.E11K 0.36 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-ED-A7PX-01 6 43172740 43172740 C G CUL9 Missense_Mutation p.H1507D 0.35 deleterious(0.01) benign(0.065) TCGA-ED-A7PX-01 7 4917455 4917455 G T RADIL Missense_Mutation p.Q106K 0.21 tolerated(0.79) benign(0.007) TCGA-ED-A7PX-01 8 143928208 143928208 C A GML 3'UTR 0.14 TCGA-ED-A7PX-01 8 196464 196464 C T ZNF596 3'UTR 0.33 TCGA-ED-A7PX-01 8 99440423 99440423 C A KCNS2 Missense_Mutation p.D72E 0.30 deleterious(0) probably_damaging(0.992) TCGA-ED-A7PX-01 9 135797282 135797282 G A TSC1 Missense_Mutation p.P196L 0.63 deleterious(0.02) possibly_damaging(0.766) TCGA-ED-A7PX-01 9 72071267 72071267 G A APBA1 Missense_Mutation p.R562W 0.32 deleterious(0) probably_damaging(0.959) TCGA-ED-A7PX-01 X 148564225 148564225 C T IDS 3'UTR 0.42 TCGA-ED-A7PY-01 10 115602174 115602174 C A DCLRE1A Missense_Mutation p.A865S 0.38 tolerated(0.11) benign(0.098) TCGA-ED-A7PY-01 10 123687948 123687948 G T ATE1 5'Flank 0.06 TCGA-ED-A7PY-01 10 91498042 91498042 G A KIF20B Silent p.A1108A 0.38 TCGA-ED-A7PY-01 10 97626110 97626110 G A ENTPD1 Silent p.K513K 0.40 TCGA-ED-A7PY-01 11 100864003 100864003 A G TMEM133 3'UTR 0.54 TCGA-ED-A7PY-01 11 103029663 103029663 T A DYNC2H1 Missense_Mutation p.F1429I 0.36 probably_damaging(0.968) TCGA-ED-A7PY-01 11 116746134 116746134 C T SIK3 Missense_Mutation p.V367I 0.06 tolerated_low_confidence(0.07) benign(0.01) TCGA-ED-A7PY-01 11 121476237 121476237 A G SORL1 Silent p.A1635A 0.50 TCGA-ED-A7PY-01 11 44952351 44952351 G A TSPAN18 3'UTR 0.25 TCGA-ED-A7PY-01 11 4869943 4869943 G A OR51S1 Missense_Mutation p.P166S 0.49 deleterious(0) probably_damaging(1) TCGA-ED-A7PY-01 11 55322154 55322154 G C OR4C15 Silent p.A124A 0.08 TCGA-ED-A7PY-01 11 56468353 56468353 T A OR9G1 Missense_Mutation p.S164T 0.26 tolerated(0.67) benign(0.009) TCGA-ED-A7PY-01 12 107486784 107486784 A T CRY1 5'UTR 0.27 TCGA-ED-A7PY-01 12 49443599 49443599 G A KMT2D Missense_Mutation p.R1258W 0.42 probably_damaging(0.984) TCGA-ED-A7PY-01 12 72026111 72026111 C A ZFC3H1 Missense_Mutation p.V1001L 0.11 tolerated(0.29) benign(0.003) TCGA-ED-A7PY-01 13 58299287 58299287 G A PCDH17 Silent p.E1113E 0.41 TCGA-ED-A7PY-01 14 101350343 101350343 G T RTL1 Missense_Mutation p.S261R 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-ED-A7PY-01 14 65199611 65199611 G T PLEKHG3 Missense_Mutation p.R390L 0.39 deleterious(0) probably_damaging(0.998) TCGA-ED-A7PY-01 15 43027807 43027807 G A CDAN1 Missense_Mutation p.R282W 0.25 tolerated(0.11) probably_damaging(0.995) TCGA-ED-A7PY-01 17 32614839 32614839 T A CCL11 3'UTR 0.36 TCGA-ED-A7PY-01 17 33932839 33932839 G T AP2B1 Missense_Mutation p.A87S 0.37 deleterious(0.01) possibly_damaging(0.827) TCGA-ED-A7PY-01 18 55103728 55103728 C T ONECUT2 Silent p.P260P 0.40 TCGA-ED-A7PY-01 19 12015547 12015547 T C ZNF69 Missense_Mutation p.L98P 0.09 deleterious(0.02) probably_damaging(0.957) TCGA-ED-A7PY-01 19 17634107 17634107 C T FAM129C 5'Flank 0.38 TCGA-ED-A7PY-01 19 36278879 36278879 T C ARHGAP33 Missense_Mutation p.Y977H 0.20 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-ED-A7PY-01 19 40521843 40521843 G T ZNF546 3'UTR 0.29 TCGA-ED-A7PY-01 1 155720228 155720228 A G GON4L 3'UTR 0.12 TCGA-ED-A7PY-01 1 185897698 185897698 T G HMCN1 Nonsense_Mutation p.L484* 0.09 TCGA-ED-A7PY-01 1 240286619 240286619 G A FMN2 Missense_Mutation p.A586T 0.85 unknown(0) TCGA-ED-A7PY-01 20 644968 644968 G A SCRT2 Silent p.L91L 0.50 TCGA-ED-A7PY-01 22 37603385 37603385 C T SSTR3 Missense_Mutation p.R153H 0.06 deleterious(0.01) probably_damaging(0.969) TCGA-ED-A7PY-01 22 41783376 41783376 A G TEF Missense_Mutation p.K60R 0.05 tolerated(0.09) benign(0.09) TCGA-ED-A7PY-01 22 50356872 50356872 C G PIM3 3'UTR 0.31 TCGA-ED-A7PY-01 2 197184307 197184307 C T HECW2 Missense_Mutation p.C436Y 0.35 deleterious_low_confidence(0.02) benign(0) TCGA-ED-A7PY-01 2 32641025 32641025 T C BIRC6 Missense_Mutation p.F889S 0.20 benign(0) TCGA-ED-A7PY-01 2 51255367 51255367 G T NRXN1 Nonsense_Mutation p.C15* 0.50 TCGA-ED-A7PY-01 3 126726740 126726740 G A PLXNA1 Missense_Mutation p.R699H 0.07 deleterious(0.02) probably_damaging(0.939) TCGA-ED-A7PY-01 3 130293202 130293202 A G COL6A6 Missense_Mutation p.H1127R 0.40 tolerated(0.69) benign(0.009) TCGA-ED-A7PY-01 3 52551075 52551075 G A STAB1 Missense_Mutation p.R1480Q 0.46 deleterious(0) probably_damaging(0.965) TCGA-ED-A7PY-01 3 57130461 57130461 C T IL17RD Missense_Mutation p.R727H 0.23 tolerated_low_confidence(1) benign(0) TCGA-ED-A7PY-01 4 185339323 185339323 T A IRF2 Nonsense_Mutation p.K137* 0.70 TCGA-ED-A7PY-01 4 40155896 40155896 G A N4BP2 3'UTR 0.16 TCGA-ED-A7PY-01 6 155597357 155597357 C A CLDN20 Missense_Mutation p.F168L 0.38 deleterious(0.02) possibly_damaging(0.554) TCGA-ED-A7PY-01 6 33644858 33644858 G A ITPR3 Missense_Mutation p.V1172I 0.15 tolerated(0.42) benign(0.396) TCGA-ED-A7PY-01 6 86223594 86223594 G A SNX14 Silent p.N859N 0.13 TCGA-ED-A7PY-01 9 22009270 22009270 G T CDKN2B 5'UTR 0.59 TCGA-ED-A7PY-01 X 100807806 100807806 G C ARMCX1 5'UTR 0.42 TCGA-ED-A7PY-01 X 153698391 153698391 G T PLXNA3 Nonsense_Mutation p.E1623* 0.24 TCGA-ED-A7PY-01 X 40511063 40511063 G T MED14 Missense_Mutation p.P1454T 0.33 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-ED-A7PZ-01 10 12126675 12126675 G T DHTKD1 Silent p.R149R 0.48 TCGA-ED-A7PZ-01 10 121411173 121411175 AGA - BAG3 5'UTR 0.31 TCGA-ED-A7PZ-01 10 129681969 129681969 C A CLRN3 Missense_Mutation p.G134W 0.47 deleterious(0.01) probably_damaging(1) TCGA-ED-A7PZ-01 10 134942775 134942775 C T GPR123 Silent p.V481V 0.43 TCGA-ED-A7PZ-01 10 28023482 28023482 T A MKX Missense_Mutation p.Q247H 0.52 deleterious(0.02) possibly_damaging(0.614) TCGA-ED-A7PZ-01 10 32560684 32560684 T A EPC1 Missense_Mutation p.T746S 0.49 tolerated(0.61) possibly_damaging(0.468) TCGA-ED-A7PZ-01 10 38120244 38120244 T A ZNF248 3'UTR 0.40 TCGA-ED-A7PZ-01 10 49392912 49392912 T A FRMPD2 Missense_Mutation p.N791I 0.35 tolerated(0.52) possibly_damaging(0.791) TCGA-ED-A7PZ-01 10 50256624 50256624 C A VSTM4 Missense_Mutation p.G225V 0.15 deleterious(0) probably_damaging(1) TCGA-ED-A7PZ-01 11 102398359 102398359 C A MMP7 Missense_Mutation p.R127L 0.29 tolerated(0.12) benign(0.121) TCGA-ED-A7PZ-01 11 106810255 106810255 C T GUCY1A2 Silent p.L379L 0.28 TCGA-ED-A7PZ-01 11 113281601 113281601 T C DRD2 Missense_Mutation p.I394V 0.62 tolerated(0.45) benign(0.387) TCGA-ED-A7PZ-01 11 124180322 124180322 A T OR8D1 Missense_Mutation p.L114H 0.70 deleterious(0) probably_damaging(0.969) TCGA-ED-A7PZ-01 11 17565945 17565945 G T USH1C 5'Flank 0.59 TCGA-ED-A7PZ-01 11 35236397 35236397 A T CD44 Splice_Site p.X604_splice 0.62 TCGA-ED-A7PZ-01 11 5291051 5291051 C A HBE1 Missense_Mutation p.A24S 0.17 deleterious(0.02) benign(0.309) TCGA-ED-A7PZ-01 11 55873254 55873254 T G OR8H2 Missense_Mutation p.L246V 0.26 tolerated(0.12) benign(0.327) TCGA-ED-A7PZ-01 11 56058142 56058142 C T OR8H1 Missense_Mutation p.V133I 0.24 tolerated(0.08) benign(0.02) TCGA-ED-A7PZ-01 11 57427466 57427466 A T CLP1 Missense_Mutation p.D173V 0.55 deleterious(0) possibly_damaging(0.9) TCGA-ED-A7PZ-01 11 57505430 57505441 TGGCCAACACAA - TMX2 In_Frame_Del p.A100_I103del 0.36 TCGA-ED-A7PZ-01 11 6007165 6007165 T C OR52L1 3'UTR 0.19 TCGA-ED-A7PZ-01 11 61197424 61197424 C T CPSF7 5'Flank 0.67 TCGA-ED-A7PZ-01 11 63176219 63176219 T C SLC22A9 Missense_Mutation p.L490P 0.33 deleterious(0) probably_damaging(0.971) TCGA-ED-A7PZ-01 11 63177289 63177289 A T SLC22A9 Missense_Mutation p.R539S 0.67 deleterious(0.04) benign(0.146) TCGA-ED-A7PZ-01 11 63585819 63585819 C T C11orf84 Missense_Mutation p.R197C 0.62 deleterious(0) probably_damaging(0.978) TCGA-ED-A7PZ-01 11 92534161 92534161 T C FAT3 Missense_Mutation p.V2661A 0.61 probably_damaging(0.976) TCGA-ED-A7PZ-01 11 9750888 9750888 A T SWAP70 Splice_Site p.X264_splice 0.33 TCGA-ED-A7PZ-01 11 9853870 9853870 A G SBF2 Missense_Mutation p.W1185R 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-ED-A7PZ-01 12 10005943 10005943 A G CLEC2B Missense_Mutation p.C136R 0.76 deleterious(0) benign(0.009) TCGA-ED-A7PZ-01 12 101693811 101693811 G T UTP20 Missense_Mutation p.M549I 0.91 tolerated(0.31) benign(0.001) TCGA-ED-A7PZ-01 12 102419817 102419817 C G CCDC53 Splice_Site p.X146_splice 0.25 TCGA-ED-A7PZ-01 12 10962090 10962091 - A TAS2R9 Frame_Shift_Ins p.I196Dfs*12 0.13 TCGA-ED-A7PZ-01 12 118533474 118533474 T A VSIG10 Silent p.P75P 0.95 TCGA-ED-A7PZ-01 12 2717739 2717739 T A CACNA1C Missense_Mutation p.V1160E 0.15 deleterious(0) probably_damaging(0.91) TCGA-ED-A7PZ-01 12 3047308 3047308 A T TULP3 Missense_Mutation p.Q351L 0.74 deleterious(0.01) benign(0.047) TCGA-ED-A7PZ-01 12 43826449 43826449 A G ADAMTS20 Silent p.H962H 0.66 TCGA-ED-A7PZ-01 12 48191236 48191236 T G HDAC7 Missense_Mutation p.S170R 0.75 deleterious(0.04) possibly_damaging(0.568) TCGA-ED-A7PZ-01 12 48723852 48723852 G T H1FNT 3'UTR 0.40 TCGA-ED-A7PZ-01 12 50869368 50869368 A T LARP4 Silent p.S632S 0.27 TCGA-ED-A7PZ-01 12 5153590 5153590 C T KCNA5 Missense_Mutation p.P93S 0.75 tolerated_low_confidence(0.58) benign(0.002) TCGA-ED-A7PZ-01 12 57498539 57498539 C G STAT6 Silent p.G353G 0.23 TCGA-ED-A7PZ-01 12 64724758 64724758 A T C12orf56 Missense_Mutation p.L157Q 0.82 tolerated(0.1) possibly_damaging(0.714) TCGA-ED-A7PZ-01 12 6939521 6939521 C T LEPREL2 Missense_Mutation p.A218V 0.19 tolerated(0.11) possibly_damaging(0.615) TCGA-ED-A7PZ-01 12 8386983 8386983 C G RP11-266K4.9 5'Flank 0.29 TCGA-ED-A7PZ-01 12 85266977 85266977 T A SLC6A15 Missense_Mutation p.D333V 0.73 deleterious(0) probably_damaging(0.996) TCGA-ED-A7PZ-01 13 23911609 23911609 T A SACS Missense_Mutation p.T2136S 0.42 benign(0.004) TCGA-ED-A7PZ-01 13 27239184 27239184 A G WASF3 Missense_Mutation p.I51M 0.35 deleterious(0.01) benign(0.37) TCGA-ED-A7PZ-01 13 29001941 29001941 G A FLT1 Silent p.S408S 0.50 TCGA-ED-A7PZ-01 13 43469145 43469145 C A EPSTI1 Missense_Mutation p.W316C 0.60 deleterious(0) probably_damaging(0.947) TCGA-ED-A7PZ-01 13 43469146 43469146 C A EPSTI1 Missense_Mutation p.W316L 0.60 deleterious(0) possibly_damaging(0.866) TCGA-ED-A7PZ-01 13 49027173 49027173 A C RB1 Missense_Mutation p.E580D 0.34 tolerated(0.16) benign(0.001) TCGA-ED-A7PZ-01 13 95816633 95816633 T A ABCC4 Missense_Mutation p.Q725L 0.24 deleterious(0.01) benign(0.062) TCGA-ED-A7PZ-01 14 102029035 102029035 G T DIO3 3'UTR 0.60 TCGA-ED-A7PZ-01 14 104209017 104209017 A C PPP1R13B Missense_Mutation p.S432A 0.55 tolerated(0.29) benign(0.007) TCGA-ED-A7PZ-01 14 21270099 21270099 T A RNASE1 Silent p.S43S 0.17 TCGA-ED-A7PZ-01 14 22038449 22038449 C A OR10G3 Missense_Mutation p.A143S 0.18 tolerated(0.29) benign(0.015) TCGA-ED-A7PZ-01 14 50576410 50576410 A - VCPKMT 3'UTR 0.11 TCGA-ED-A7PZ-01 14 59112597 59112597 G T DACT1 Missense_Mutation p.W419L 0.47 tolerated(0.6) benign(0.381) TCGA-ED-A7PZ-01 14 64522760 64522760 C G SYNE2 Silent p.P3281P 0.33 TCGA-ED-A7PZ-01 14 69676318 69676318 A T EXD2 Missense_Mutation p.Q44L 0.68 tolerated_low_confidence(0.3) benign(0.054) TCGA-ED-A7PZ-01 14 70263762 70263764 GAA - SLC10A1 In_Frame_Del p.F37del 0.44 TCGA-ED-A7PZ-01 14 75505088 75505088 T C MLH3 Missense_Mutation p.I1200V 0.36 deleterious(0.04) probably_damaging(0.987) TCGA-ED-A7PZ-01 15 22473052 22473052 A T IGHV4OR15-8 Missense_Mutation p.H73Q 0.12 tolerated(0.14) benign(0) TCGA-ED-A7PZ-01 15 24926660 24926660 A T NPAP1 3'UTR 0.52 TCGA-ED-A7PZ-01 15 28460799 28460799 C G HERC2 Missense_Mutation p.A2060P 0.63 benign(0.021) TCGA-ED-A7PZ-01 15 38228513 38228513 A T TMCO5A Splice_Site 0.25 TCGA-ED-A7PZ-01 15 42137485 42137485 A G PLA2G4B Missense_Mutation p.K673E 0.18 deleterious(0.01) probably_damaging(0.99) TCGA-ED-A7PZ-01 15 43700285 43700285 G T TP53BP1 Missense_Mutation p.Q1868K 0.16 deleterious(0.02) benign(0.431) TCGA-ED-A7PZ-01 15 48577419 48577419 A T SLC12A1 Missense_Mutation p.N868Y 0.58 deleterious(0.02) benign(0.128) TCGA-ED-A7PZ-01 15 55931838 55931838 A T PRTG Splice_Site p.X775_splice 0.33 TCGA-ED-A7PZ-01 15 56388218 56388218 C T RFX7 Missense_Mutation p.G570R 0.25 deleterious_low_confidence(0) possibly_damaging(0.687) TCGA-ED-A7PZ-01 15 56757225 56757225 G T MNS1 5'UTR 0.59 TCGA-ED-A7PZ-01 15 65689172 65689172 C A IGDCC4 Missense_Mutation p.A333S 0.17 deleterious(0.01) benign(0.283) TCGA-ED-A7PZ-01 15 65822854 65822854 C T PTPLAD1 5'UTR 0.60 TCGA-ED-A7PZ-01 15 85345722 85345722 A T ZNF592 3'UTR 0.20 TCGA-ED-A7PZ-01 15 89754011 89754011 G T RLBP1 Silent p.I238I 0.42 TCGA-ED-A7PZ-01 16 15727694 15727694 G T KIAA0430 Missense_Mutation p.P338Q 0.40 deleterious_low_confidence(0) benign(0.335) TCGA-ED-A7PZ-01 16 15853461 15853461 A T MYH11 Missense_Mutation p.L465Q 0.50 probably_damaging(1) TCGA-ED-A7PZ-01 16 2980531 2980531 A G FLYWCH1 Missense_Mutation p.Q148R 0.39 deleterious(0.03) benign(0.039) TCGA-ED-A7PZ-01 16 3085406 3085406 A T CCDC64B Missense_Mutation p.L31Q 0.60 deleterious(0.02) probably_damaging(0.919) TCGA-ED-A7PZ-01 16 53341643 53341643 A C CHD9 Missense_Mutation p.K2277N 0.17 unknown(0) TCGA-ED-A7PZ-01 16 53738074 53738074 G T FTO 5'UTR 0.26 TCGA-ED-A7PZ-01 16 57608882 57608882 A G GPR114 Missense_Mutation p.D455G 0.12 deleterious(0) probably_damaging(0.992) TCGA-ED-A7PZ-01 16 57731872 57731872 T A CCDC135 Missense_Mutation p.L4Q 0.21 deleterious_low_confidence(0) unknown(0) TCGA-ED-A7PZ-01 16 67662374 67662374 G A CTCF Missense_Mutation p.M540I 0.63 tolerated(0.27) benign(0.024) TCGA-ED-A7PZ-01 16 67691447 67691447 T A RLTPR 3'UTR 0.72 TCGA-ED-A7PZ-01 16 67985728 67985728 T A SLC12A4 Missense_Mutation p.Q379L 0.60 tolerated(0.89) benign(0.026) TCGA-ED-A7PZ-01 16 70852337 70852337 T A HYDIN Missense_Mutation p.N4856Y 0.22 probably_damaging(0.955) TCGA-ED-A7PZ-01 16 7629893 7629893 C T RBFOX1 Missense_Mutation p.R149W 0.48 deleterious(0) probably_damaging(0.996) TCGA-ED-A7PZ-01 16 818834 818834 A T MSLN 3'UTR 0.65 TCGA-ED-A7PZ-01 16 88499480 88499480 C T ZNF469 Missense_Mutation p.P1840S 0.21 possibly_damaging(0.514) TCGA-ED-A7PZ-01 16 89256721 89256721 C A CDH15 Missense_Mutation p.A350E 0.20 tolerated(0.37) possibly_damaging(0.462) TCGA-ED-A7PZ-01 17 18250860 18250860 T A SHMT1 Nonsense_Mutation p.K157* 0.33 TCGA-ED-A7PZ-01 17 26574940 26574940 T A CTD-2008P7.8 RNA 0.43 TCGA-ED-A7PZ-01 17 34257110 34257110 C A RDM1 Silent p.R82R 0.19 TCGA-ED-A7PZ-01 17 39134282 39134282 A G KRT40 3'UTR 0.36 TCGA-ED-A7PZ-01 17 39140202 39140202 G T KRT40 Silent p.R108R 0.38 TCGA-ED-A7PZ-01 17 39579146 39579146 C T KRT37 Missense_Mutation p.D206N 0.50 deleterious(0.02) probably_damaging(0.995) TCGA-ED-A7PZ-01 17 39637038 39637038 C G KRT35 Silent p.L104L 0.54 TCGA-ED-A7PZ-01 17 41001329 41001329 C G AOC2 Missense_Mutation p.S605R 0.20 deleterious(0) probably_damaging(0.946) TCGA-ED-A7PZ-01 17 45897358 45897358 C A OSBPL7 Missense_Mutation p.W60C 0.62 deleterious(0) probably_damaging(1) TCGA-ED-A7PZ-01 17 48050405 48050405 C A DLX4 Intron 0.39 TCGA-ED-A7PZ-01 17 57057829 57057829 T A PPM1E Missense_Mutation p.Y569N 0.39 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-ED-A7PZ-01 17 62892240 62892240 T C LRRC37A3 Missense_Mutation p.Q379R 0.17 tolerated(0.33) benign(0.007) TCGA-ED-A7PZ-01 17 66971951 66971951 T A ABCA9 3'UTR 0.38 TCGA-ED-A7PZ-01 17 67283767 67283767 A T ABCA5 Silent p.A676A 0.20 TCGA-ED-A7PZ-01 17 7251303 7251303 T A ACAP1 Missense_Mutation p.L469Q 0.70 tolerated(0.14) probably_damaging(1) TCGA-ED-A7PZ-01 17 7577531 7577538 GGGCCTCC - TP53 Frame_Shift_Del p.R248Hfs*13 0.88 TCGA-ED-A7PZ-01 17 79193699 79193699 T A AZI1 Missense_Mutation p.E53V 0.19 deleterious(0.01) possibly_damaging(0.687) TCGA-ED-A7PZ-01 18 12028869 12028869 G T IMPA2 Missense_Mutation p.A210S 0.39 tolerated(0.07) possibly_damaging(0.455) TCGA-ED-A7PZ-01 18 2732311 2732311 A T SMCHD1 Missense_Mutation p.S1033C 0.45 deleterious(0) probably_damaging(0.999) TCGA-ED-A7PZ-01 18 29264373 29264373 C T B4GALT6 Missense_Mutation p.R6Q 0.19 tolerated_low_confidence(0.15) benign(0.232) TCGA-ED-A7PZ-01 18 42529858 42529858 C - SETBP1 Frame_Shift_Del p.Q186Rfs*21 0.37 TCGA-ED-A7PZ-01 18 44408008 44408008 T G PIAS2 Silent p.I474I 0.46 TCGA-ED-A7PZ-01 18 59158023 59158023 T C CDH20 Silent p.Y79Y 0.43 TCGA-ED-A7PZ-01 18 61325773 61325773 T C SERPINB3 Missense_Mutation p.N148S 0.19 deleterious(0) probably_damaging(0.963) TCGA-ED-A7PZ-01 18 7949192 7949192 G A PTPRM Missense_Mutation p.R226Q 0.20 tolerated(0.38) benign(0.013) TCGA-ED-A7PZ-01 19 1005395 1005395 T A GRIN3B Missense_Mutation p.V632E 0.73 deleterious(0) probably_damaging(0.978) TCGA-ED-A7PZ-01 19 1014293 1014293 C G TMEM259 Silent p.G135G 0.33 TCGA-ED-A7PZ-01 19 10624601 10624601 A T S1PR5 Missense_Mutation p.S363T 0.81 tolerated(0.25) benign(0.202) TCGA-ED-A7PZ-01 19 12936625 12936625 T A RTBDN Silent p.G227G 0.87 TCGA-ED-A7PZ-01 19 14201107 14201107 C T SAMD1 Silent p.L42L 0.05 TCGA-ED-A7PZ-01 19 15052383 15052383 A T OR7C2 Missense_Mutation p.H28L 0.03 deleterious_low_confidence(0.03) benign(0) TCGA-ED-A7PZ-01 19 17886926 17886926 C A FCHO1 Missense_Mutation p.L380I 0.94 deleterious(0.05) probably_damaging(0.998) TCGA-ED-A7PZ-01 19 1796124 1796124 G T ATP8B3 Missense_Mutation p.L632M 0.49 deleterious(0) probably_damaging(1) TCGA-ED-A7PZ-01 19 20003672 20003672 A T ZNF253 3'UTR 0.88 TCGA-ED-A7PZ-01 19 20308783 20308783 A G ZNF486 Missense_Mutation p.T422A 0.38 tolerated(0.07) benign(0.015) TCGA-ED-A7PZ-01 19 36214899 36214899 C T KMT2B Nonsense_Mutation p.R1109* 0.15 TCGA-ED-A7PZ-01 19 38161302 38161302 T G ZNF781 5'UTR 0.16 TCGA-ED-A7PZ-01 19 38572737 38572737 G A SIPA1L3 Missense_Mutation p.E178K 0.18 deleterious(0) probably_damaging(0.999) TCGA-ED-A7PZ-01 19 39207845 39207845 G A ACTN4 Silent p.P344P 0.09 TCGA-ED-A7PZ-01 19 42187899 42187899 T A CEACAM7 Missense_Mutation p.T175S 0.66 deleterious(0.01) benign(0.44) TCGA-ED-A7PZ-01 19 44271859 44271859 T C KCNN4 Missense_Mutation p.M374V 0.59 tolerated(0.12) benign(0.096) TCGA-ED-A7PZ-01 19 47127137 47127137 C T PTGIR Missense_Mutation p.E116K 0.20 deleterious(0) probably_damaging(0.997) TCGA-ED-A7PZ-01 19 48305315 48305315 G C TPRX1 Missense_Mutation p.P318R 0.11 tolerated(0.16) possibly_damaging(0.904) TCGA-ED-A7PZ-01 19 48305786 48305786 G A TPRX1 Missense_Mutation p.A161V 0.10 tolerated(0.53) unknown(0) TCGA-ED-A7PZ-01 19 50102990 50102992 CTC - PRR12 In_Frame_Del p.S1382del 0.18 TCGA-ED-A7PZ-01 19 53056843 53056843 A T ZNF808 Missense_Mutation p.H225L 0.63 deleterious(0) benign(0.031) TCGA-ED-A7PZ-01 19 53793422 53793422 A T BIRC8 Missense_Mutation p.L69Q 0.63 deleterious(0) probably_damaging(0.993) TCGA-ED-A7PZ-01 19 53885429 53885429 A T ZNF525 3'UTR 0.10 TCGA-ED-A7PZ-01 19 55493848 55493848 T A NLRP2 Missense_Mutation p.L261Q 0.26 deleterious(0) probably_damaging(0.977) TCGA-ED-A7PZ-01 19 55898416 55898416 G T RPL28 Intron 1.00 TCGA-ED-A7PZ-01 19 58453484 58453484 C G ZNF256 Missense_Mutation p.G231A 0.12 tolerated(0.74) benign(0.42) TCGA-ED-A7PZ-01 19 9071656 9071656 A C MUC16 Missense_Mutation p.S5264A 0.43 unknown(0) TCGA-ED-A7PZ-01 1 102270187 102270187 G T OLFM3 Missense_Mutation p.D328E 0.50 deleterious(0) probably_damaging(0.994) TCGA-ED-A7PZ-01 1 109801478 109801478 G A CELSR2 Silent p.S1245S 0.26 TCGA-ED-A7PZ-01 1 120462971 120462971 C T NOTCH2 Missense_Mutation p.R1787Q 0.07 deleterious(0) probably_damaging(0.996) TCGA-ED-A7PZ-01 1 120928482 120928482 C T FCGR1B Intron 0.41 TCGA-ED-A7PZ-01 1 1274703 1274703 A C DVL1 Intron 0.39 TCGA-ED-A7PZ-01 1 147230478 147230478 T C GJA5 Missense_Mutation p.Q290R 0.14 tolerated(0.16) benign(0.029) TCGA-ED-A7PZ-01 1 150054960 150054960 C T VPS45 Missense_Mutation p.A366V 0.67 tolerated(0.22) benign(0.14) TCGA-ED-A7PZ-01 1 153924016 153924016 G T CRTC2 Missense_Mutation p.S375Y 0.67 deleterious(0) probably_damaging(0.982) TCGA-ED-A7PZ-01 1 154527989 154527989 C T UBE2Q1 Missense_Mutation p.R151K 0.21 tolerated(0.29) benign(0.003) TCGA-ED-A7PZ-01 1 155023119 155023119 C A DCST1 Missense_Mutation p.H632Q 0.38 tolerated(0.15) benign(0.009) TCGA-ED-A7PZ-01 1 1561031 1561031 A T MIB2 Nonsense_Mutation p.K439* 0.56 TCGA-ED-A7PZ-01 1 156595239 156595239 G A HAPLN2 3'UTR 0.31 TCGA-ED-A7PZ-01 1 159043068 159043068 A G AIM2 Silent p.Y74Y 0.37 TCGA-ED-A7PZ-01 1 160323960 160323960 T G NCSTN Missense_Mutation p.V411G 0.27 deleterious(0.02) possibly_damaging(0.703) TCGA-ED-A7PZ-01 1 161832997 161832997 A T ATF6 Silent p.S538S 0.29 TCGA-ED-A7PZ-01 1 176915125 176915125 A G ASTN1 Missense_Mutation p.F729S 0.27 tolerated(0.06) benign(0.279) TCGA-ED-A7PZ-01 1 182569551 182569551 A T RGS16 Missense_Mutation p.L162Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-ED-A7PZ-01 1 215345508 215345508 T A KCNK2 Missense_Mutation p.F269I 0.13 tolerated(0.1) possibly_damaging(0.885) TCGA-ED-A7PZ-01 1 22083087 22083087 T A USP48 Missense_Mutation p.S122C 0.49 deleterious(0.03) possibly_damaging(0.886) TCGA-ED-A7PZ-01 1 228290668 228290668 C A C1orf35 Silent p.A59A 0.71 TCGA-ED-A7PZ-01 1 232144628 232144628 C A DISC1 Missense_Mutation p.L714M 0.14 deleterious(0.04) probably_damaging(0.98) TCGA-ED-A7PZ-01 1 235826071 235826071 T A LYST 3'UTR 0.67 TCGA-ED-A7PZ-01 1 237025590 237025590 A T MTR Missense_Mutation p.M751L 0.25 tolerated(0.12) benign(0.05) TCGA-ED-A7PZ-01 1 23885422 23885422 T A ID3 Intron 0.41 TCGA-ED-A7PZ-01 1 245851297 245851297 G T KIF26B Missense_Mutation p.R1671M 0.52 deleterious(0) unknown(0) TCGA-ED-A7PZ-01 1 247013752 247013752 T A AHCTF1 Silent p.P1861P 0.62 TCGA-ED-A7PZ-01 1 248224411 248224411 T C OR2L3 Missense_Mutation p.M143T 0.24 deleterious(0.02) possibly_damaging(0.845) TCGA-ED-A7PZ-01 1 25571745 25571745 G A C1orf63 Silent p.L190L 0.29 TCGA-ED-A7PZ-01 1 25810611 25810611 G A TMEM57 Missense_Mutation p.E387K 0.40 deleterious(0) probably_damaging(0.999) TCGA-ED-A7PZ-01 1 26365755 26365755 T A SLC30A2 Missense_Mutation p.S339C 0.52 tolerated(0.09) benign(0.012) TCGA-ED-A7PZ-01 1 27238142 27238142 C G NR0B2 3'UTR 0.35 TCGA-ED-A7PZ-01 1 32157244 32157244 C A COL16A1 Splice_Site p.X420_splice 0.45 TCGA-ED-A7PZ-01 1 36904373 36904373 T A OSCP1 Missense_Mutation p.Q84L 0.30 tolerated(0.14) benign(0.283) TCGA-ED-A7PZ-01 1 38230698 38230698 A T EPHA10 Missense_Mutation p.L14H 0.58 tolerated(0.12) benign(0.298) TCGA-ED-A7PZ-01 1 40766752 40766752 G T COL9A2 3'UTR 0.31 TCGA-ED-A7PZ-01 1 43162928 43162928 C T YBX1 Silent p.F245F 0.32 TCGA-ED-A7PZ-01 1 57383434 57383434 C G C8A 3'UTR 0.45 TCGA-ED-A7PZ-01 1 78325806 78325806 C T FAM73A Nonsense_Mutation p.R424* 0.36 TCGA-ED-A7PZ-01 1 85403666 85403666 T A MCOLN2 Missense_Mutation p.N404Y 0.41 deleterious(0.01) probably_damaging(1) TCGA-ED-A7PZ-01 1 94548999 94548999 T A ABCA4 Splice_Site p.X257_splice 0.10 TCGA-ED-A7PZ-01 1 99418684 99418684 C A LPPR5 Missense_Mutation p.R188L 0.43 deleterious(0) probably_damaging(1) TCGA-ED-A7PZ-01 20 13550171 13550171 G T TASP1 Missense_Mutation p.P184H 0.68 deleterious(0.01) benign(0.232) TCGA-ED-A7PZ-01 20 18123282 18123282 G A CSRP2BP 5'UTR 0.30 TCGA-ED-A7PZ-01 20 23350846 23350846 C T GZF1 Missense_Mutation p.S635L 0.10 tolerated(0.11) benign(0.079) TCGA-ED-A7PZ-01 20 31043960 31043960 C T C20orf112 Silent p.L116L 0.23 TCGA-ED-A7PZ-01 20 43942173 43942173 C T RBPJL Missense_Mutation p.R229C 0.72 deleterious(0) probably_damaging(1) TCGA-ED-A7PZ-01 20 47273608 47273608 A T PREX1 Missense_Mutation p.L698Q 0.27 deleterious(0) possibly_damaging(0.789) TCGA-ED-A7PZ-01 20 47444283 47444283 C T PREX1 Missense_Mutation p.A39T 0.26 tolerated_low_confidence(0.07) possibly_damaging(0.483) TCGA-ED-A7PZ-01 20 50305604 50305604 T A ATP9A Silent p.S266S 0.62 TCGA-ED-A7PZ-01 20 50782528 50782528 T A ZFP64 Missense_Mutation p.Q108L 0.70 deleterious(0.01) possibly_damaging(0.885) TCGA-ED-A7PZ-01 20 58318246 58318246 T A PHACTR3 Missense_Mutation p.L68Q 0.69 deleterious(0) possibly_damaging(0.866) TCGA-ED-A7PZ-01 20 60713291 60713291 T C PSMA7 Missense_Mutation p.Y176C 0.69 deleterious(0) probably_damaging(0.97) TCGA-ED-A7PZ-01 21 34400278 34400278 G A OLIG2 3'UTR 0.33 TCGA-ED-A7PZ-01 21 34728056 34728056 G T IFNAR1 3'UTR 0.38 TCGA-ED-A7PZ-01 21 36421297 36421297 C A RUNX1 5'UTR 0.33 TCGA-ED-A7PZ-01 21 46308698 46308698 C G ITGB2 Missense_Mutation p.E664Q 0.70 tolerated(0.12) probably_damaging(1) TCGA-ED-A7PZ-01 21 47333904 47333904 C T PCBP3 Missense_Mutation p.P214S 0.42 deleterious(0.03) benign(0.285) TCGA-ED-A7PZ-01 22 21377002 21377002 A T P2RX6 Missense_Mutation p.E142V 0.32 tolerated(0.14) benign(0.098) TCGA-ED-A7PZ-01 22 32108298 32108298 T A PRR14L Missense_Mutation p.S1843C 0.50 deleterious(0) possibly_damaging(0.874) TCGA-ED-A7PZ-01 22 36960321 36960321 G A CACNG2 3'UTR 0.48 TCGA-ED-A7PZ-01 22 38823554 38823554 A T KCNJ4 Missense_Mutation p.V195E 0.56 deleterious(0.05) benign(0.026) TCGA-ED-A7PZ-01 22 39887931 39887931 C T MGAT3 3'UTR 0.63 TCGA-ED-A7PZ-01 22 44332942 44332942 A T PNPLA3 Missense_Mutation p.R257W 0.30 tolerated(0.05) benign(0.006) TCGA-ED-A7PZ-01 22 45210622 45210622 T G ARHGAP8 Missense_Mutation p.L246V 0.24 deleterious(0.02) benign(0.403) TCGA-ED-A7PZ-01 2 108487504 108487504 C A RGPD4 Missense_Mutation p.A1015E 0.38 tolerated(0.21) possibly_damaging(0.827) TCGA-ED-A7PZ-01 2 1094065 1094065 C T SNTG2 Silent p.V98V 0.24 TCGA-ED-A7PZ-01 2 113067546 113067546 A T ZC3H6 Missense_Mutation p.S141C 0.32 deleterious(0) probably_damaging(0.998) TCGA-ED-A7PZ-01 2 166535809 166535809 T A CSRNP3 Missense_Mutation p.L435Q 0.56 tolerated(0.3) probably_damaging(0.999) TCGA-ED-A7PZ-01 2 172666177 172666177 T A SLC25A12 Missense_Mutation p.D415V 0.20 deleterious(0) probably_damaging(0.974) TCGA-ED-A7PZ-01 2 17896176 17896176 G A SMC6 Missense_Mutation p.P561L 0.08 deleterious(0.01) benign(0.003) TCGA-ED-A7PZ-01 2 179345576 179345576 C T PLEKHA3 5'UTR 0.15 TCGA-ED-A7PZ-01 2 179407911 179407911 A T TTN Silent p.T32263T 0.56 TCGA-ED-A7PZ-01 2 179594820 179594820 C T TTN Missense_Mutation p.E6103K 0.36 TCGA-ED-A7PZ-01 2 179611653 179611653 A C TTN Intron 0.33 TCGA-ED-A7PZ-01 2 179825979 179825979 T A CCDC141 Missense_Mutation p.Q253L 0.60 tolerated(0.35) benign(0.005) TCGA-ED-A7PZ-01 2 189861938 189861938 C A COL3A1 Silent p.G603G 0.45 TCGA-ED-A7PZ-01 2 1926446 1926446 C T MYT1L Silent p.E365E 0.24 TCGA-ED-A7PZ-01 2 196765124 196765124 A T DNAH7 Missense_Mutation p.L1477Q 0.34 deleterious(0) probably_damaging(1) TCGA-ED-A7PZ-01 2 203379609 203379609 A T BMPR2 Splice_Site p.X177_splice 0.31 TCGA-ED-A7PZ-01 2 207429764 207429764 T A ADAM23 Missense_Mutation p.W456R 0.48 deleterious(0) benign(0.407) TCGA-ED-A7PZ-01 2 219553490 219553490 C T STK36 Missense_Mutation p.S484F 0.31 deleterious(0) benign(0.187) TCGA-ED-A7PZ-01 2 220341676 220341676 A T SPEG Missense_Mutation p.K1511I 0.28 possibly_damaging(0.493) TCGA-ED-A7PZ-01 2 220439764 220439764 C A INHA Nonsense_Mutation p.S206* 0.35 TCGA-ED-A7PZ-01 2 225702538 225702538 C G DOCK10 Missense_Mutation p.D931H 0.34 tolerated(1) benign(0.01) TCGA-ED-A7PZ-01 2 232602720 232602720 T C PDE6D Intron 0.29 TCGA-ED-A7PZ-01 2 232894736 232894736 A G DIS3L2 Silent p.R104R 0.33 TCGA-ED-A7PZ-01 2 242077365 242077365 T C PASK Intron 0.23 TCGA-ED-A7PZ-01 2 27480785 27480785 C A SLC30A3 Missense_Mutation p.C189F 0.26 tolerated(0.1) benign(0.005) TCGA-ED-A7PZ-01 2 31758776 31758776 T A AL133247.2 Intron 0.46 TCGA-ED-A7PZ-01 2 32341205 32341205 T A SPAST Missense_Mutation p.F341Y 0.36 deleterious(0) possibly_damaging(0.783) TCGA-ED-A7PZ-01 2 47045344 47045344 A T LINC01118 Silent p.P100P 0.20 TCGA-ED-A7PZ-01 2 48848041 48848041 C G STON1-GTF2A1L Missense_Mutation p.L729V 0.42 deleterious(0.04) probably_damaging(0.999) TCGA-ED-A7PZ-01 2 68544310 68544310 T A CNRIP1 Missense_Mutation p.Q103H 0.58 deleterious(0) probably_damaging(0.98) TCGA-ED-A7PZ-01 2 89197215 89197215 A T IGKV5-2 Missense_Mutation p.Y87F 0.27 deleterious(0.02) possibly_damaging(0.491) TCGA-ED-A7PZ-01 3 108698446 108698446 C A MORC1 Missense_Mutation p.G798V 0.21 deleterious(0) possibly_damaging(0.634) TCGA-ED-A7PZ-01 3 111342600 111342600 G T CD96 Splice_Site p.X410_splice 0.35 TCGA-ED-A7PZ-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.25 TCGA-ED-A7PZ-01 3 124437851 124437851 C T RP11-71H17.7 5'Flank 0.15 TCGA-ED-A7PZ-01 3 124437876 124437876 G A RP11-71H17.7 5'Flank 0.16 TCGA-ED-A7PZ-01 3 124909320 124909320 T A SLC12A8 Missense_Mutation p.M33L 0.17 deleterious(0.02) benign(0.001) TCGA-ED-A7PZ-01 3 128181316 128181316 T C DNAJB8 3'UTR 0.57 TCGA-ED-A7PZ-01 3 130884346 130884346 A T NEK11 Missense_Mutation p.S387C 0.53 deleterious(0.02) possibly_damaging(0.592) TCGA-ED-A7PZ-01 3 145924525 145924525 G A PLSCR4 Missense_Mutation p.P48S 0.14 tolerated(0.07) benign(0.144) TCGA-ED-A7PZ-01 3 153842229 153842229 G C ARHGEF26 Missense_Mutation p.D372H 0.57 deleterious(0) probably_damaging(0.973) TCGA-ED-A7PZ-01 3 180322340 180322340 C A TTC14 Missense_Mutation p.L216I 0.24 deleterious(0.03) benign(0.391) TCGA-ED-A7PZ-01 3 195507956 195507956 T A MUC4 Missense_Mutation p.T3499S 0.17 probably_damaging(0.938) TCGA-ED-A7PZ-01 3 41266098 41266098 A G CTNNB1 Missense_Mutation p.D32G 0.92 deleterious(0.01) possibly_damaging(0.452) TCGA-ED-A7PZ-01 3 57135268 57135268 T G IL17RD Missense_Mutation p.Q368P 0.88 tolerated(0.55) benign(0.031) TCGA-ED-A7PZ-01 3 97868527 97868527 C A OR5H14 Missense_Mutation p.Q100K 0.14 deleterious(0.01) possibly_damaging(0.858) TCGA-ED-A7PZ-01 4 128628111 128628111 G A INTU Missense_Mutation p.G753E 0.79 tolerated(0.07) benign(0.255) TCGA-ED-A7PZ-01 4 152080413 152080413 A T SH3D19 Missense_Mutation p.N298K 0.30 deleterious(0.04) benign(0.06) TCGA-ED-A7PZ-01 4 2209958 2209958 T G POLN Missense_Mutation p.K157T 0.14 deleterious(0.02) possibly_damaging(0.553) TCGA-ED-A7PZ-01 4 3427240 3427240 A G RGS12 Missense_Mutation p.D1095G 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-ED-A7PZ-01 4 41266155 41266155 A T UCHL1 Missense_Mutation p.S188C 0.55 deleterious(0.04) possibly_damaging(0.854) TCGA-ED-A7PZ-01 4 57873096 57873096 A T POLR2B Silent p.L444L 0.24 TCGA-ED-A7PZ-01 4 62862048 62862048 T C LPHN3 Silent p.F1024F 0.78 TCGA-ED-A7PZ-01 4 74702437 74702437 T A CXCL6 5'UTR 0.77 TCGA-ED-A7PZ-01 4 87692580 87692580 T A PTPN13 Missense_Mutation p.V1692E 0.83 tolerated(0.09) benign(0.012) TCGA-ED-A7PZ-01 5 128977564 128977564 A T ADAMTS19 Missense_Mutation p.T589S 0.24 tolerated(0.39) benign(0.269) TCGA-ED-A7PZ-01 5 139060694 139060694 G A CXXC5 Missense_Mutation p.V196M 0.27 tolerated(0.21) possibly_damaging(0.862) TCGA-ED-A7PZ-01 5 140595369 140595369 G A PCDHB13 Silent p.S558S 0.62 TCGA-ED-A7PZ-01 5 140769755 140769755 T A PCDHGB4 Missense_Mutation p.S768R 0.19 tolerated(0.07) benign(0.006) TCGA-ED-A7PZ-01 5 153035418 153035418 A T GRIA1 Missense_Mutation p.I239F 0.29 tolerated(0.11) probably_damaging(1) TCGA-ED-A7PZ-01 5 156381475 156381475 A T TIMD4 Silent p.P117P 0.66 TCGA-ED-A7PZ-01 5 156899882 156899882 G A NIPAL4 Missense_Mutation p.D439N 0.65 tolerated(0.08) probably_damaging(1) TCGA-ED-A7PZ-01 5 159821530 159821530 C G C5orf54 Missense_Mutation p.S323T 0.22 tolerated(0.43) benign(0.002) TCGA-ED-A7PZ-01 5 173316585 173316585 T G CPEB4 5'UTR 0.17 TCGA-ED-A7PZ-01 5 176520211 176520211 C T FGFR4 Missense_Mutation p.S377F 0.28 tolerated(1) benign(0.004) TCGA-ED-A7PZ-01 5 178392529 178392529 A T ZNF454 Missense_Mutation p.Q375L 0.34 deleterious(0.02) possibly_damaging(0.895) TCGA-ED-A7PZ-01 5 1882077 1882077 A T IRX4 Missense_Mutation p.Y48N 0.67 tolerated(0.21) probably_damaging(0.946) TCGA-ED-A7PZ-01 5 65118764 65118764 G A NLN 3'UTR 0.15 TCGA-ED-A7PZ-01 5 65322213 65322213 A C ERBB2IP Missense_Mutation p.Q368H 0.21 deleterious(0.01) probably_damaging(0.954) TCGA-ED-A7PZ-01 5 72742703 72742703 T A FOXD1 3'UTR 0.08 TCGA-ED-A7PZ-01 5 90070014 90070014 G A GPR98 Silent p.Q4099Q 0.24 TCGA-ED-A7PZ-01 6 12124094 12124094 G T HIVEP1 Missense_Mutation p.V1356F 0.15 deleterious(0) possibly_damaging(0.846) TCGA-ED-A7PZ-01 6 129591828 129591828 C T LAMA2 Silent p.G794G 0.82 TCGA-ED-A7PZ-01 6 134210900 134210900 G A TCF21 Missense_Mutation p.R122K 0.22 deleterious(0) probably_damaging(0.968) TCGA-ED-A7PZ-01 6 136597179 136597179 T A BCLAF1 Missense_Mutation p.Q495L 0.32 tolerated(0.7) benign(0.145) TCGA-ED-A7PZ-01 6 151151983 151151983 A G PLEKHG1 Missense_Mutation p.D579G 0.84 tolerated(0.14) benign(0.285) TCGA-ED-A7PZ-01 6 160211594 160211594 G T MRPL18 5'UTR 0.95 TCGA-ED-A7PZ-01 6 167754699 167754699 C A TTLL2 Silent p.I437I 0.98 TCGA-ED-A7PZ-01 6 170112536 170112536 T A PHF10 Silent p.S301S 0.86 TCGA-ED-A7PZ-01 6 27279067 27279067 G T POM121L2 Missense_Mutation p.P295T 0.54 tolerated(0.46) benign(0.006) TCGA-ED-A7PZ-01 6 29342331 29342331 A G OR12D3 Missense_Mutation p.M245T 0.10 tolerated(1) benign(0.009) TCGA-ED-A7PZ-01 6 30621047 30621048 - T DHX16 Frame_Shift_Ins p.I1033Nfs*34 0.48 TCGA-ED-A7PZ-01 6 30918786 30918786 G T DPCR1 Missense_Mutation p.A849S 0.47 tolerated(0.6) benign(0.007) TCGA-ED-A7PZ-01 6 32015532 32015532 T A TNXB 5'Flank 0.28 TCGA-ED-A7PZ-01 6 40400714 40400714 G T LRFN2 Missense_Mutation p.P47T 0.42 deleterious(0) probably_damaging(1) TCGA-ED-A7PZ-01 6 41121500 41121500 G A TREML1 Silent p.P124P 0.13 TCGA-ED-A7PZ-01 6 44149032 44149032 T A CAPN11 Missense_Mutation p.L638Q 0.55 deleterious(0) probably_damaging(0.999) TCGA-ED-A7PZ-01 6 52849299 52849299 T A GSTA4 Missense_Mutation p.Q126L 0.42 deleterious(0.02) benign(0.195) TCGA-ED-A7PZ-01 6 62407112 62407112 A T KHDRBS2 Missense_Mutation p.Y314N 0.45 deleterious(0) probably_damaging(0.996) TCGA-ED-A7PZ-01 6 74118988 74118988 C A DDX43 Missense_Mutation p.D399E 0.21 deleterious(0.02) possibly_damaging(0.843) TCGA-ED-A7PZ-01 6 75887629 75887629 T A COL12A1 Silent p.L729L 0.91 TCGA-ED-A7PZ-01 6 84417640 84417640 C A SNAP91 Missense_Mutation p.G3C 0.97 deleterious(0) unknown(0) TCGA-ED-A7PZ-01 6 88854869 88854869 C T CNR1 Missense_Mutation p.G42E 0.88 deleterious_low_confidence(0.03) benign(0.115) TCGA-ED-A7PZ-01 7 100676441 100676441 G A MUC17 Missense_Mutation p.V582M 0.55 probably_damaging(0.927) TCGA-ED-A7PZ-01 7 100684989 100684989 C T MUC17 Missense_Mutation p.T3431I 0.47 possibly_damaging(0.793) TCGA-ED-A7PZ-01 7 11030469 11030469 A G PHF14 Missense_Mutation p.H347R 0.40 deleterious(0) possibly_damaging(0.778) TCGA-ED-A7PZ-01 7 127978350 127978350 T G RBM28 Silent p.L165L 0.42 TCGA-ED-A7PZ-01 7 129951962 129951962 T A CPA4 Missense_Mutation p.Y360N 0.48 deleterious(0) probably_damaging(0.951) TCGA-ED-A7PZ-01 7 139416674 139416674 T A HIPK2 Missense_Mutation p.S54C 0.53 deleterious(0.01) benign(0.246) TCGA-ED-A7PZ-01 7 139416675 139416675 C A HIPK2 Missense_Mutation p.Q53H 0.52 tolerated(0.91) benign(0) TCGA-ED-A7PZ-01 7 140710338 140710338 T C MRPS33 Silent p.K32K 0.37 TCGA-ED-A7PZ-01 7 144015352 144015352 G A OR2A1 Silent p.L45L 0.13 TCGA-ED-A7PZ-01 7 150175085 150175085 A T GIMAP8 3'UTR 0.62 TCGA-ED-A7PZ-01 7 155301641 155301641 T A CNPY1 Missense_Mutation p.E31V 0.42 deleterious(0) possibly_damaging(0.873) TCGA-ED-A7PZ-01 7 156802352 156802352 A T MNX1 Splice_Site p.X231_splice 0.42 TCGA-ED-A7PZ-01 7 20449870 20449870 A T ITGB8 3'UTR 0.35 TCGA-ED-A7PZ-01 7 2279075 2279075 C G FTSJ2 Missense_Mutation p.Q92H 0.54 tolerated(0.09) benign(0.016) TCGA-ED-A7PZ-01 7 22852531 22852531 A - TOMM7 3'UTR 0.48 TCGA-ED-A7PZ-01 7 23391021 23391021 A T IGF2BP3 Missense_Mutation p.L196M 0.48 deleterious(0.02) benign(0.033) TCGA-ED-A7PZ-01 7 32599056 32599056 C A AVL9 Missense_Mutation p.P399T 0.26 deleterious(0) probably_damaging(0.992) TCGA-ED-A7PZ-01 7 35129977 35129977 A T DPY19L2P1 RNA 0.45 TCGA-ED-A7PZ-01 7 42007259 42007259 A T GLI3 Missense_Mutation p.M789K 0.46 tolerated(0.36) benign(0.066) TCGA-ED-A7PZ-01 7 43484963 43484963 C A HECW1 Missense_Mutation p.T731K 0.47 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-ED-A7PZ-01 7 48278844 48278844 A T ABCA13 Missense_Mutation p.T302S 0.39 benign(0.025) TCGA-ED-A7PZ-01 7 53104385 53104385 G A POM121L12 3'UTR 0.39 TCGA-ED-A7PZ-01 7 6189834 6189834 G A USP42 Silent p.P669P 0.59 TCGA-ED-A7PZ-01 7 74536694 74536694 G T GTF2IRD2B Missense_Mutation p.V81F 0.28 deleterious_low_confidence(0.01) benign(0.061) TCGA-ED-A7PZ-01 7 75896669 75896669 G A SRRM3 Nonsense_Mutation p.W308* 0.40 TCGA-ED-A7PZ-01 7 94294507 94294507 T A PEG10 3'UTR 0.47 TCGA-ED-A7PZ-01 8 113293463 113293463 G T CSMD3 Missense_Mutation p.P3150T 0.20 tolerated(0.57) benign(0.016) TCGA-ED-A7PZ-01 8 125131937 125131937 T A FER1L6 Missense_Mutation p.I1827N 0.53 deleterious(0.03) probably_damaging(0.986) TCGA-ED-A7PZ-01 8 142151309 142151309 A G DENND3 Missense_Mutation p.Y90C 0.29 tolerated(0.18) benign(0.002) TCGA-ED-A7PZ-01 8 146157778 146157778 T A ZNF16 Missense_Mutation p.Q132L 0.51 tolerated(0.07) benign(0.016) TCGA-ED-A7PZ-01 8 16035438 16035438 A T MSR1 Silent p.S20S 0.86 TCGA-ED-A7PZ-01 8 30705371 30705371 A G TEX15 Missense_Mutation p.I388T 0.83 tolerated(0.14) possibly_damaging(0.676) TCGA-ED-A7PZ-01 8 54792132 54792132 C T RGS20 Silent p.D160D 0.20 TCGA-ED-A7PZ-01 8 56879395 56879395 G T LYN Missense_Mutation p.R304S 0.36 tolerated(0.05) possibly_damaging(0.628) TCGA-ED-A7PZ-01 8 69143582 69143582 G T PREX2 Missense_Mutation p.C1597F 0.36 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-ED-A7PZ-01 8 73932979 73932979 G C TERF1 Missense_Mutation p.G159A 0.37 tolerated(0.91) benign(0.001) TCGA-ED-A7PZ-01 8 82615054 82615054 T C ZFAND1 Missense_Mutation p.D228G 0.12 tolerated(0.08) benign(0.071) TCGA-ED-A7PZ-01 8 95952315 95952315 G T TP53INP1 Silent p.S82S 0.14 TCGA-ED-A7PZ-01 8 99963924 99963924 T G OSR2 Missense_Mutation p.F312V 0.42 deleterious(0) benign(0.109) TCGA-ED-A7PZ-01 9 101068512 101068512 G A GABBR2 Missense_Mutation p.A707V 0.90 tolerated(0.17) benign(0.428) TCGA-ED-A7PZ-01 9 117139221 117139221 C T AKNA Missense_Mutation p.C289Y 0.85 tolerated(0.39) benign(0.048) TCGA-ED-A7PZ-01 9 131133678 131133678 G C URM1 Missense_Mutation p.V7L 0.82 tolerated(0.51) benign(0.01) TCGA-ED-A7PZ-01 9 133963131 133963131 G T LAMC3 Missense_Mutation p.E1468D 0.08 tolerated(0.18) benign(0.022) TCGA-ED-A7PZ-01 9 135116364 135116364 C A NTNG2 Silent p.R430R 0.95 TCGA-ED-A7PZ-01 9 139297178 139297178 G C SDCCAG3 3'UTR 0.62 TCGA-ED-A7PZ-01 9 2641451 2641451 T A VLDLR Missense_Mutation p.C134S 0.84 deleterious(0) probably_damaging(1) TCGA-ED-A7PZ-01 X 114249118 114249118 A T IL13RA2 Missense_Mutation p.L89Q 0.93 deleterious(0) probably_damaging(0.991) TCGA-ED-A7PZ-01 X 118223434 118223434 A T KIAA1210 Missense_Mutation p.L587M 0.95 tolerated(0.1) possibly_damaging(0.683) TCGA-ED-A7PZ-01 X 140994576 140994576 C A MAGEC1 Silent p.S462S 0.10 TCGA-ED-A7PZ-01 X 21887622 21887622 C T MBTPS2 Missense_Mutation p.P266S 0.93 tolerated(0.07) possibly_damaging(0.714) TCGA-ED-A7PZ-01 X 27997063 27997063 C A DCAF8L1 3'UTR 1.00 TCGA-ED-A7PZ-01 X 32429921 32429921 G T DMD Missense_Mutation p.A1394E 1.00 possibly_damaging(0.556) TCGA-ED-A7PZ-01 X 38008840 38008840 A T SRPX 3'UTR 0.83 TCGA-ED-A7PZ-01 X 39932115 39932115 T A BCOR Silent p.A828A 0.88 TCGA-ED-A7PZ-01 X 43603116 43603116 A T MAOA Missense_Mutation p.E446D 0.90 tolerated(0.34) benign(0.03) TCGA-ED-A7PZ-01 X 48931536 48931536 G T PRAF2 Silent p.V37V 0.83 TCGA-ED-A7PZ-01 X 67293091 67293091 A T OPHN1 Silent p.P579P 0.92 TCGA-ED-A7PZ-01 X 88009463 88009463 T A CPXCR1 3'UTR 0.85 TCGA-ED-A7XO-01 10 73330627 73330627 C A CDH23 Silent p.I235I 0.16 TCGA-ED-A7XO-01 11 103006470 103006470 G C DYNC2H1 Missense_Mutation p.R789S 0.23 benign(0.025) TCGA-ED-A7XO-01 11 66460755 66460755 C A SPTBN2 Missense_Mutation p.D1586Y 0.33 deleterious(0.01) benign(0.237) TCGA-ED-A7XO-01 11 75134789 75134789 A T KLHL35 Missense_Mutation p.Y504N 0.25 deleterious(0) unknown(0) TCGA-ED-A7XO-01 11 985500 985500 C T AP2A2 Missense_Mutation p.P294S 0.17 deleterious(0.01) benign(0.322) TCGA-ED-A7XO-01 12 111655734 111655734 A T CUX2 Missense_Mutation p.Q72L 0.21 deleterious(0) benign(0.295) TCGA-ED-A7XO-01 12 122845703 122845703 C T CLIP1 Missense_Mutation p.G270S 0.25 deleterious(0) probably_damaging(1) TCGA-ED-A7XO-01 12 20769305 20769305 G A PDE3A Missense_Mutation p.A471T 0.20 tolerated(0.4) benign(0.016) TCGA-ED-A7XO-01 12 50560946 50560946 C T CERS5 Silent p.R45R 0.14 TCGA-ED-A7XO-01 13 27333209 27333209 G T GPR12 Silent p.T252T 0.08 TCGA-ED-A7XO-01 14 58478850 58478850 T C C14orf37 Missense_Mutation p.K703R 0.15 deleterious(0.02) possibly_damaging(0.486) TCGA-ED-A7XO-01 14 63468076 63468076 G T KCNH5 Missense_Mutation p.Q136K 0.17 deleterious(0.02) probably_damaging(0.965) TCGA-ED-A7XO-01 14 77931884 77931884 T G AHSA1 Silent p.A188A 0.22 TCGA-ED-A7XO-01 15 55475581 55475581 T C RSL24D1 Missense_Mutation p.E117G 0.16 deleterious(0.03) benign(0.002) TCGA-ED-A7XO-01 15 58254254 58254254 C A ALDH1A2 Missense_Mutation p.V403L 0.16 deleterious(0) probably_damaging(0.98) TCGA-ED-A7XO-01 15 77407661 77407661 T A PEAK1 Missense_Mutation p.I1360F 0.16 deleterious(0) probably_damaging(0.998) TCGA-ED-A7XO-01 16 24831569 24831569 G A TNRC6A Silent p.P1730P 0.22 TCGA-ED-A7XO-01 17 62498310 62498310 T C DDX5 Missense_Mutation p.S376G 0.14 deleterious(0.02) benign(0.119) TCGA-ED-A7XO-01 17 73636388 73636389 - A SMIM5 Frame_Shift_Ins p.V37Sfs*28 0.10 TCGA-ED-A7XO-01 17 75369534 75369534 C T SEPT9 Intron 0.21 TCGA-ED-A7XO-01 17 7577511 7577511 A G TP53 Missense_Mutation p.L257P 0.26 deleterious(0) probably_damaging(1) TCGA-ED-A7XO-01 17 79937093 79937093 A G ASPSCR1 Missense_Mutation p.N46D 0.11 tolerated(0.24) unknown(0) TCGA-ED-A7XO-01 17 909328 909328 C T ABR Missense_Mutation p.D858N 0.27 deleterious_low_confidence(0.01) probably_damaging(0.977) TCGA-ED-A7XO-01 19 11516057 11516057 A G RGL3 Missense_Mutation p.S348P 0.05 deleterious(0) probably_damaging(0.999) TCGA-ED-A7XO-01 19 14748990 14748990 C T EMR3 Missense_Mutation p.G471S 0.19 deleterious(0) probably_damaging(0.986) TCGA-ED-A7XO-01 19 15905584 15905584 T C OR10H5 Silent p.C242C 0.16 TCGA-ED-A7XO-01 19 33349420 33349420 A T SLC7A9 Silent p.A301A 0.22 TCGA-ED-A7XO-01 19 33871377 33871377 A G CEBPG 3'UTR 0.16 TCGA-ED-A7XO-01 19 33871881 33871881 A - CEBPG 3'UTR 0.13 TCGA-ED-A7XO-01 19 33872206 33872206 A T CEBPG 3'UTR 0.11 TCGA-ED-A7XO-01 19 42343434 42343434 C G LYPD4 5'UTR 0.33 TCGA-ED-A7XO-01 1 1266874 1266874 G A TAS1R3 Missense_Mutation p.G50D 0.14 tolerated(0.34) benign(0.001) TCGA-ED-A7XO-01 1 152281994 152281994 G T FLG Missense_Mutation p.Q1790K 0.25 benign(0.042) TCGA-ED-A7XO-01 1 185902929 185902929 G A HMCN1 Missense_Mutation p.A601T 0.16 benign(0.009) TCGA-ED-A7XO-01 1 19408022 19408022 C A UBR4 Silent p.L5018L 0.26 TCGA-ED-A7XO-01 1 200562884 200562884 A C KIF14 Missense_Mutation p.F855V 0.18 tolerated(0.73) benign(0.001) TCGA-ED-A7XO-01 1 201196308 201196308 A T IGFN1 Silent p.A3695A 0.38 TCGA-ED-A7XO-01 1 51323604 51323604 T A FAF1 Missense_Mutation p.L37F 0.17 deleterious(0) probably_damaging(0.998) TCGA-ED-A7XO-01 1 66713174 66713174 C G PDE4B Missense_Mutation p.R105G 0.29 tolerated(0.07) possibly_damaging(0.491) TCGA-ED-A7XO-01 20 25203506 25203506 G T ENTPD6 Missense_Mutation p.V360L 0.20 deleterious(0.05) benign(0.277) TCGA-ED-A7XO-01 20 36470822 36470822 G A CTNNBL1 Splice_Site p.X464_splice 0.18 TCGA-ED-A7XO-01 20 62194883 62194883 C T HELZ2 Silent p.T1764T 0.21 TCGA-ED-A7XO-01 22 29695604 29695604 G T EWSR1 Missense_Mutation p.R570I 0.19 deleterious_low_confidence(0.01) unknown(0) TCGA-ED-A7XO-01 2 197081786 197081786 C A HECW2 Missense_Mutation p.W1480C 0.19 deleterious(0) probably_damaging(0.998) TCGA-ED-A7XO-01 2 25016357 25016357 C T CENPO 5'UTR 0.27 TCGA-ED-A7XO-01 2 28974980 28974980 G T PPP1CB 5'UTR 0.21 TCGA-ED-A7XO-01 2 37295937 37295937 C T HEATR5B Missense_Mutation p.R355Q 0.20 tolerated(0.1) benign(0.396) TCGA-ED-A7XO-01 2 46607602 46607603 AG - EPAS1 Frame_Shift_Del p.E598Afs*12 0.10 TCGA-ED-A7XO-01 2 71304745 71304745 A T NAGK Missense_Mutation p.S321C 0.18 deleterious(0) probably_damaging(1) TCGA-ED-A7XO-01 3 108281998 108281998 G C KIAA1524 Missense_Mutation p.P537A 0.18 deleterious(0.02) possibly_damaging(0.557) TCGA-ED-A7XO-01 3 111312520 111312520 T C ZBED2 Missense_Mutation p.R177G 0.06 tolerated(0.06) possibly_damaging(0.815) TCGA-ED-A7XO-01 3 133465250 133465250 C A TF 5'UTR 0.20 TCGA-ED-A7XO-01 3 147113833 147113833 C G ZIC4 Missense_Mutation p.G215A 0.13 deleterious(0.04) probably_damaging(0.985) TCGA-ED-A7XO-01 3 183772621 183772621 C A HTR3C Nonsense_Mutation p.Y60* 0.18 TCGA-ED-A7XO-01 3 48451118 48451118 C A PLXNB1 Missense_Mutation p.D1934Y 0.09 deleterious(0) probably_damaging(0.997) TCGA-ED-A7XO-01 3 50257736 50257736 G T SLC38A3 RNA 0.30 TCGA-ED-A7XO-01 4 164393739 164393739 C A TKTL2 Missense_Mutation p.R383L 0.18 deleterious(0.02) probably_damaging(0.932) TCGA-ED-A7XO-01 4 177041041 177041041 T C WDR17 Missense_Mutation p.C135R 0.12 deleterious(0.01) possibly_damaging(0.526) TCGA-ED-A7XO-01 4 17711179 17711179 G A FAM184B Missense_Mutation p.A77V 0.08 tolerated(0.17) benign(0.019) TCGA-ED-A7XO-01 4 39246144 39246144 G T WDR19 Missense_Mutation p.A873S 0.07 deleterious(0) probably_damaging(0.976) TCGA-ED-A7XO-01 4 57180856 57180856 G A KIAA1211 Silent p.A396A 0.37 TCGA-ED-A7XO-01 5 101592902 101592902 T C SLCO4C1 Silent p.G462G 0.21 TCGA-ED-A7XO-01 5 64079679 64079679 G T CWC27 Missense_Mutation p.R90L 0.22 deleterious(0) probably_damaging(0.997) TCGA-ED-A7XO-01 5 82836639 82836639 A G VCAN Missense_Mutation p.H2606R 0.29 tolerated(0.27) benign(0.01) TCGA-ED-A7XO-01 6 135515497 135515497 C A MYB Missense_Mutation p.H283N 0.15 tolerated(0.21) probably_damaging(0.966) TCGA-ED-A7XO-01 6 43401071 43401071 G A ABCC10 Missense_Mutation p.M451I 0.12 deleterious(0) probably_damaging(0.989) TCGA-ED-A7XO-01 6 75887438 75887438 A G COL12A1 Missense_Mutation p.I793T 0.19 benign(0.032) TCGA-ED-A7XO-01 6 80197406 80197406 T C LCA5 Missense_Mutation p.K470R 0.22 tolerated(0.06) probably_damaging(1) TCGA-ED-A7XO-01 6 84270663 84270663 C A SNAP91 Nonsense_Mutation p.G816* 0.22 TCGA-ED-A7XO-01 7 138603314 138603314 G A KIAA1549 Missense_Mutation p.A353V 0.16 tolerated(0.15) benign(0.004) TCGA-ED-A7XO-01 7 143748366 143748366 G T OR2A5 Missense_Mutation p.S291I 0.13 deleterious(0) probably_damaging(0.91) TCGA-ED-A7XO-01 8 108348431 108348431 C G ANGPT1 Missense_Mutation p.E174D 0.20 deleterious(0) probably_damaging(0.996) TCGA-ED-A7XO-01 8 143816912 143816912 A G THEM6 3'UTR 0.12 TCGA-ED-A7XO-01 8 57080762 57080762 G A PLAG1 Missense_Mutation p.R23C 0.09 tolerated(0.09) probably_damaging(0.973) TCGA-ED-A7XO-01 8 68864764 68864764 G T PREX2 Silent p.L45L 0.11 TCGA-ED-A7XO-01 9 32489378 32489378 T C DDX58 Missense_Mutation p.M255V 0.13 tolerated(0.43) benign(0.001) TCGA-ED-A7XO-01 9 371468 371468 G T DOCK8 Missense_Mutation p.A637S 0.17 deleterious(0.03) probably_damaging(1) TCGA-ED-A7XO-01 9 91616133 91616133 G A S1PR3 Silent p.P6P 0.20 TCGA-ED-A7XO-01 X 135441570 135441570 T C GPR112 Missense_Mutation p.L2367S 0.38 deleterious(0) possibly_damaging(0.844) TCGA-ED-A7XO-01 X 17819379 17819379 G A RAI2 Missense_Mutation p.P251L 0.29 deleterious(0.01) unknown(0) TCGA-ED-A7XO-01 X 23398175 23398175 C A PTCHD1 Silent p.V273V 0.35 TCGA-ED-A7XP-01 10 17840644 17840645 TG - TMEM236 3'UTR 0.33 TCGA-ED-A7XP-01 10 95326941 95326941 G T FFAR4 Missense_Mutation p.R155L 0.34 tolerated(0.48) benign(0.004) TCGA-ED-A7XP-01 10 97599472 97599472 T C ENTPD1 Missense_Mutation p.S69P 0.30 deleterious(0) probably_damaging(1) TCGA-ED-A7XP-01 11 104819259 104819259 C A CASP4 Splice_Site p.X309_splice 0.30 TCGA-ED-A7XP-01 11 118452209 118452209 G A ARCN1 Silent p.R84R 0.42 TCGA-ED-A7XP-01 11 3380429 3380429 C A ZNF195 Missense_Mutation p.E603D 0.40 deleterious(0.03) possibly_damaging(0.768) TCGA-ED-A7XP-01 11 64504439 64504439 G T RASGRP2 Missense_Mutation p.A294E 0.06 deleterious(0.03) benign(0.223) TCGA-ED-A7XP-01 11 65623665 65623665 T A CFL1 Missense_Mutation p.M18L 0.36 tolerated(0.11) benign(0.032) TCGA-ED-A7XP-01 11 93494680 93494680 G A C11orf54 Splice_Site p.X209_splice 0.27 TCGA-ED-A7XP-01 12 110656216 110656216 G C IFT81 3'UTR 0.26 TCGA-ED-A7XP-01 12 443421 443421 G C KDM5A Missense_Mutation p.I492M 0.45 deleterious(0) probably_damaging(0.996) TCGA-ED-A7XP-01 12 50869602 50869602 A G LARP4 Silent p.R710R 0.22 TCGA-ED-A7XP-01 12 81112792 81112792 G - MYF5 Frame_Shift_Del p.A245Lfs*19 0.21 TCGA-ED-A7XP-01 13 111141810 111141810 G C COL4A2 Missense_Mutation p.G1076R 0.22 probably_damaging(0.988) TCGA-ED-A7XP-01 14 23242904 23242904 T G SLC7A7 Missense_Mutation p.Q484P 0.33 deleterious(0) probably_damaging(0.986) TCGA-ED-A7XP-01 14 36008806 36008806 C T RALGAPA1 Missense_Mutation p.S2065N 0.29 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-ED-A7XP-01 14 67389470 67389470 G T GPHN Nonsense_Mutation p.E182* 0.65 TCGA-ED-A7XP-01 14 86089754 86089754 G A FLRT2 Silent p.G632G 0.47 TCGA-ED-A7XP-01 16 2264015 2264015 T C PGP Missense_Mutation p.Q227R 0.34 tolerated(0.21) benign(0.193) TCGA-ED-A7XP-01 16 67159932 67159932 A G C16orf70 Missense_Mutation p.N73S 0.28 tolerated(0.45) benign(0.006) TCGA-ED-A7XP-01 16 67968561 67968561 G A PSMB10 Missense_Mutation p.H242Y 0.40 tolerated(0.1) benign(0) TCGA-ED-A7XP-01 16 81295933 81295933 G T BCMO1 Intron 0.12 TCGA-ED-A7XP-01 16 88503345 88503345 G A ZNF469 Missense_Mutation p.R3128Q 0.27 possibly_damaging(0.897) TCGA-ED-A7XP-01 17 38434624 38434624 T A WIPF2 3'UTR 0.25 TCGA-ED-A7XP-01 17 40815432 40815432 C A TUBG2 Missense_Mutation p.P173T 0.10 deleterious(0) probably_damaging(1) TCGA-ED-A7XP-01 17 42477055 42477055 C A GPATCH8 Missense_Mutation p.R797L 0.29 tolerated_low_confidence(0.13) probably_damaging(0.931) TCGA-ED-A7XP-01 17 56435197 56435197 A T RNF43 Missense_Mutation p.L647H 0.08 deleterious_low_confidence(0.02) benign(0.01) TCGA-ED-A7XP-01 17 56620718 56620718 A G C17orf47 Missense_Mutation p.V277A 0.38 deleterious(0.03) benign(0.043) TCGA-ED-A7XP-01 17 7577534 7577534 C A TP53 Missense_Mutation p.R249S 0.53 deleterious(0) probably_damaging(0.994) TCGA-ED-A7XP-01 17 78196581 78196581 C T SLC26A11 Missense_Mutation p.A121V 0.51 tolerated(0.53) benign(0.009) TCGA-ED-A7XP-01 19 18284657 18284657 C T IFI30 Silent p.T2T 0.29 TCGA-ED-A7XP-01 19 44152979 44152979 G A PLAUR 3'UTR 0.43 TCGA-ED-A7XP-01 19 55086255 55086255 G T LILRA2 Missense_Mutation p.G137V 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-ED-A7XP-01 19 58639664 58639664 C T ZNF329 Missense_Mutation p.E403K 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-ED-A7XP-01 1 113098573 113098573 G A ST7L Missense_Mutation p.A438V 0.32 deleterious(0) probably_damaging(0.999) TCGA-ED-A7XP-01 1 181701775 181701775 C A CACNA1E Missense_Mutation p.S851R 0.19 tolerated(0.49) benign(0.307) TCGA-ED-A7XP-01 1 185976272 185976272 G A HMCN1 Silent p.L1496L 0.82 TCGA-ED-A7XP-01 1 210856666 210856666 G T KCNH1 Missense_Mutation p.P976Q 0.11 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-ED-A7XP-01 1 211749034 211749047 AAAACGTCTTTAAT - SLC30A1 Frame_Shift_Del p.I403Sfs*2 0.84 TCGA-ED-A7XP-01 1 22084268 22084268 C T USP48 Missense_Mutation p.C48Y 0.28 deleterious(0) probably_damaging(0.997) TCGA-ED-A7XP-01 1 226590006 226590006 C T PARP1 Silent p.R65R 0.78 TCGA-ED-A7XP-01 1 39494585 39494585 C T NDUFS5 Silent p.F63F 0.36 TCGA-ED-A7XP-01 1 45191175 45191175 C T C1orf228 3'UTR 0.19 TCGA-ED-A7XP-01 1 65306964 65306964 T G JAK1 Missense_Mutation p.E871D 0.35 tolerated(0.14) possibly_damaging(0.809) TCGA-ED-A7XP-01 1 89726223 89726223 A G GBP5 3'UTR 0.16 TCGA-ED-A7XP-01 20 42195738 42195738 G C SGK2 Missense_Mutation p.G83R 0.30 deleterious(0.02) possibly_damaging(0.817) TCGA-ED-A7XP-01 20 54961384 54961384 C T AURKA Missense_Mutation p.S83N 0.38 tolerated(0.24) benign(0.005) TCGA-ED-A7XP-01 2 107460245 107460245 G T ST6GAL2 Silent p.G63G 0.38 TCGA-ED-A7XP-01 2 1440139 1440139 A T TPO Silent p.T155T 0.35 TCGA-ED-A7XP-01 2 196891574 196891574 G T DNAH7 Missense_Mutation p.P193T 0.29 deleterious(0.01) benign(0.027) TCGA-ED-A7XP-01 2 210561763 210561763 C T MAP2 Missense_Mutation p.R1504W 0.36 deleterious(0) probably_damaging(1) TCGA-ED-A7XP-01 2 211455540 211455540 G A CPS1 Missense_Mutation p.R292H 0.39 deleterious(0.04) probably_damaging(0.977) TCGA-ED-A7XP-01 2 21233705 21233705 C T APOB Missense_Mutation p.R2012Q 0.30 benign(0.017) TCGA-ED-A7XP-01 2 220439974 220439974 G T INHA Missense_Mutation p.W276L 0.36 deleterious(0) probably_damaging(1) TCGA-ED-A7XP-01 2 225376243 225376243 T C CUL3 Silent p.V237V 0.29 TCGA-ED-A7XP-01 3 111981884 111981884 G A SLC9C1 Missense_Mutation p.R362C 0.36 deleterious(0) probably_damaging(1) TCGA-ED-A7XP-01 3 119133178 119133178 A C ARHGAP31 Missense_Mutation p.K801T 0.34 tolerated(0.1) benign(0.075) TCGA-ED-A7XP-01 3 122978413 122978413 G - SEC22A Frame_Shift_Del p.G234Efs*25 0.25 TCGA-ED-A7XP-01 3 194336377 194336377 C - TMEM44 Frame_Shift_Del p.G325Dfs*16 0.27 TCGA-ED-A7XP-01 3 41266101 41266101 C G CTNNB1 Missense_Mutation p.S33C 0.11 deleterious(0) probably_damaging(0.987) TCGA-ED-A7XP-01 4 110384263 110384263 C T SEC24B Nonsense_Mutation p.Q114* 0.57 TCGA-ED-A7XP-01 4 70160294 70160294 C T UGT2B28 Missense_Mutation p.P453S 0.46 deleterious(0.03) probably_damaging(0.99) TCGA-ED-A7XP-01 4 87683886 87683886 C A PTPN13 Missense_Mutation p.S1187Y 0.51 deleterious(0.05) probably_damaging(0.919) TCGA-ED-A7XP-01 5 169509910 169509910 T C DOCK2 3'UTR 0.59 TCGA-ED-A7XP-01 5 3599650 3599650 C A IRX1 Silent p.R196R 0.46 TCGA-ED-A7XP-01 6 110714035 110714035 C A DDO Missense_Mutation p.R351S 0.50 tolerated(0.07) benign(0.008) TCGA-ED-A7XP-01 6 112375575 112375575 C A WISP3 Silent p.L23L 0.15 TCGA-ED-A7XP-01 6 138752106 138752106 C G NHSL1 Missense_Mutation p.E1130Q 0.29 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-ED-A7XP-01 6 170033072 170033072 G A WDR27 Missense_Mutation p.R732W 0.24 deleterious(0) possibly_damaging(0.597) TCGA-ED-A7XP-01 6 56918371 56918371 A C KIAA1586 Silent p.I358I 0.41 TCGA-ED-A7XP-01 6 71003965 71003965 T - COL9A1 Frame_Shift_Del p.I201Lfs*6 0.29 TCGA-ED-A7XP-01 6 90484380 90484380 G A MDN1 Missense_Mutation p.R632W 0.06 possibly_damaging(0.676) TCGA-ED-A7XP-01 7 106545719 106545719 A T PIK3CG Nonsense_Mutation p.K1066* 0.31 TCGA-ED-A7XP-01 7 155094008 155094008 C T INSIG1 Silent p.A195A 0.31 TCGA-ED-A7XP-01 7 97833378 97833378 G T LMTK2 Missense_Mutation p.A1455S 0.39 tolerated(1) benign(0.004) TCGA-ED-A7XP-01 8 101237520 101237520 C T SPAG1 Missense_Mutation p.S603L 0.19 tolerated(0.11) benign(0.007) TCGA-ED-A7XP-01 8 59061332 59061332 G T FAM110B 3'UTR 0.40 TCGA-ED-A7XP-01 8 61693771 61693771 C A CHD7 Missense_Mutation p.N626K 0.24 benign(0.403) TCGA-ED-A7XP-01 9 109773122 109773122 G A ZNF462 Silent p.K2444K 0.28 TCGA-ED-A7XP-01 9 18777646 18777646 G A ADAMTSL1 Missense_Mutation p.G1140D 0.50 tolerated(0.11) benign(0.06) TCGA-ED-A7XP-01 9 21367937 21367937 A C IFNA13 Missense_Mutation p.C25G 0.12 deleterious(0) probably_damaging(0.999) TCGA-ED-A7XP-01 9 21971111 21971111 G C CDKN2A Missense_Mutation p.H83D 0.50 deleterious(0) probably_damaging(1) TCGA-ED-A7XP-01 9 72459518 72459518 C T C9orf135 Nonsense_Mutation p.R80* 0.31 TCGA-ED-A7XP-01 X 31496267 31496267 C A DMD Missense_Mutation p.D2965Y 0.29 probably_damaging(0.963) TCGA-ED-A7XP-01 X 37285115 37285115 C A PRRG1 Silent p.A11A 0.37 TCGA-ED-A7XP-01 X 57621490 57621491 - A ZXDB 3'UTR 0.27 TCGA-ED-A7XP-01 X 63412194 63412194 A G AMER1 Silent p.L325L 0.10 TCGA-ED-A82E-01 10 49658744 49658744 C T ARHGAP22 Silent p.S492S 0.10 TCGA-ED-A82E-01 11 123909545 123909545 G A OR10G7 Missense_Mutation p.T55I 0.32 tolerated(0.06) benign(0.157) TCGA-ED-A82E-01 11 2416714 2416715 - AA CD81 Frame_Shift_Ins p.N142Kfs*7 0.29 TCGA-ED-A82E-01 11 65743929 65743929 G A SART1 Missense_Mutation p.E546K 0.55 tolerated(0.25) benign(0.102) TCGA-ED-A82E-01 12 1893123 1893123 G A ADIPOR2 Missense_Mutation p.A306T 0.60 tolerated(0.58) benign(0.01) TCGA-ED-A82E-01 12 19671217 19671217 T A AEBP2 Intron 0.18 TCGA-ED-A82E-01 13 88329198 88329198 G A SLITRK5 Missense_Mutation p.A519T 0.67 tolerated(0.91) benign(0.013) TCGA-ED-A82E-01 14 21464877 21464877 G T METTL17 Silent p.G424G 0.27 TCGA-ED-A82E-01 15 51039809 51039809 A C SPPL2A Missense_Mutation p.I156S 0.57 deleterious(0) possibly_damaging(0.732) TCGA-ED-A82E-01 15 90631838 90631838 C T IDH2 Missense_Mutation p.R172K 0.48 deleterious_low_confidence(0) probably_damaging(1) TCGA-ED-A82E-01 16 17353089 17353089 G A XYLT1 Silent p.A223A 0.44 TCGA-ED-A82E-01 17 15644532 15644532 G A TBC1D26 Missense_Mutation p.A215T 0.65 tolerated(0.8) benign(0.197) TCGA-ED-A82E-01 17 1684503 1684503 C A SMYD4 3'UTR 0.53 TCGA-ED-A82E-01 17 21321484 21321484 C T KCNJ12 3'UTR 0.49 TCGA-ED-A82E-01 17 26906776 26906776 C T SPAG5 Silent p.Q959Q 0.37 TCGA-ED-A82E-01 19 39883132 39883133 - GATTCAGAAC MED29 Frame_Shift_Ins p.T107Dfs*5 0.16 TCGA-ED-A82E-01 19 50031779 50031779 G A RCN3 Missense_Mutation p.G17E 0.38 tolerated(0.27) benign(0.165) TCGA-ED-A82E-01 19 50917028 50917028 G T POLD1 Missense_Mutation p.M760I 0.12 deleterious(0) probably_damaging(0.965) TCGA-ED-A82E-01 19 52249927 52249927 G T FPR1 Silent p.I107I 0.39 TCGA-ED-A82E-01 19 56011599 56011599 C T SSC5D Missense_Mutation p.R708W 0.24 benign(0.013) TCGA-ED-A82E-01 19 56154722 56154722 G C ZNF580 3'UTR 0.32 TCGA-ED-A82E-01 1 175048581 175048581 G A TNN Silent p.A174A 0.42 TCGA-ED-A82E-01 1 222817928 222817928 G A MIA3 Intron 0.16 TCGA-ED-A82E-01 20 60882773 60882773 G C ADRM1 Missense_Mutation p.G249R 0.41 tolerated(0.34) unknown(0) TCGA-ED-A82E-01 21 46309959 46309959 C T ITGB2 Missense_Mutation p.G531R 0.47 deleterious(0) probably_damaging(0.997) TCGA-ED-A82E-01 22 21343966 21344002 GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA - LZTR1 Splice_Site p.X217_splice 0.33 TCGA-ED-A82E-01 22 41980580 41980580 G A PMM1 Missense_Mutation p.A78V 0.10 deleterious(0.03) benign(0.182) TCGA-ED-A82E-01 2 207528078 207528078 T C DYTN Silent p.Q394Q 0.59 TCGA-ED-A82E-01 2 54857137 54857137 C T SPTBN1 Silent p.I926I 0.59 TCGA-ED-A82E-01 2 61447525 61447525 G A USP34 Missense_Mutation p.A2656V 0.38 tolerated(0.18) benign(0.412) TCGA-ED-A82E-01 3 120941851 120941851 G A STXBP5L Missense_Mutation p.E320K 0.41 deleterious(0) probably_damaging(0.999) TCGA-ED-A82E-01 3 152881827 152881828 GG - RAP2B 3'UTR 0.09 TCGA-ED-A82E-01 3 166960379 166960379 G A ZBBX Silent p.S769S 0.42 TCGA-ED-A82E-01 5 141336991 141336991 C A PCDH12 Silent p.L142L 0.53 TCGA-ED-A82E-01 5 73069677 73069677 C A ARHGEF28 Intron 0.08 TCGA-ED-A82E-01 5 94022380 94022380 G T ANKRD32 Missense_Mutation p.S693I 0.07 deleterious(0.04) benign(0.11) TCGA-ED-A82E-01 6 24869375 24869375 G T FAM65B Missense_Mutation p.Q121K 0.03 deleterious(0) possibly_damaging(0.755) TCGA-ED-A82E-01 6 28963999 28963999 T G ZNF311 Silent p.S260S 0.30 TCGA-ED-A82E-01 6 46129492 46129492 T C ENPP5 Splice_Site p.X336_splice 0.20 TCGA-ED-A82E-01 7 114269944 114269944 C A FOXP2 Missense_Mutation p.Q186K 0.26 tolerated(0.95) unknown(0) TCGA-ED-A82E-01 7 157931034 157931034 C T PTPRN2 Missense_Mutation p.E362K 0.39 tolerated(0.32) benign(0.022) TCGA-ED-A82E-01 8 117668129 117668129 C A EIF3H Missense_Mutation p.A225S 0.36 tolerated(0.64) benign(0.011) TCGA-ED-A82E-01 9 119109470 119109470 C T PAPPA Missense_Mutation p.H1316Y 0.40 deleterious(0.03) benign(0) TCGA-ED-A82E-01 9 124936889 124936889 G A MORN5 Missense_Mutation p.R141H 0.20 tolerated(0.06) benign(0.015) TCGA-ED-A82E-01 X 108926881 108926881 G A ACSL4 5'UTR 0.38 TCGA-ED-A82E-01 X 134480992 134480992 G A ZNF449 5'UTR 0.40 TCGA-ED-A82E-01 X 91132344 91132344 G T PCDH11X Missense_Mutation p.V369F 0.15 tolerated(0.7) benign(0.008) TCGA-ED-A8O5-01 10 13658446 13658446 A G RP11-295P9.3 Missense_Mutation p.I158V 0.45 tolerated(0.16) possibly_damaging(0.868) TCGA-ED-A8O5-01 10 19780461 19780461 A T MALRD1 Missense_Mutation p.E1061V 0.46 tolerated(0.1) benign(0.019) TCGA-ED-A8O5-01 10 38344303 38344306 GTGT - ZNF33A Frame_Shift_Del p.C418Gfs*20 0.38 TCGA-ED-A8O5-01 10 46959945 46959945 T A SYT15 3'Flank 0.16 TCGA-ED-A8O5-01 11 108264021 108264021 T C C11orf65 Silent p.R215R 0.40 TCGA-ED-A8O5-01 11 19256370 19256370 A T E2F8 Missense_Mutation p.H229Q 0.36 tolerated(0.6) benign(0.066) TCGA-ED-A8O5-01 11 4703440 4703440 A C OR51E2 Missense_Mutation p.C168G 0.44 deleterious(0) probably_damaging(0.999) TCGA-ED-A8O5-01 11 61732056 61732056 T C BEST1 3'UTR 0.43 TCGA-ED-A8O5-01 11 63325963 63325963 T G HRASLS2 Silent p.A96A 0.53 TCGA-ED-A8O5-01 11 69625279 69625279 T C FGF3 Missense_Mutation p.T172A 0.43 tolerated(0.1) probably_damaging(0.999) TCGA-ED-A8O5-01 11 76376969 76376969 G A LRRC32 Silent p.A10A 0.24 TCGA-ED-A8O5-01 11 78419516 78419516 T C TENM4 Missense_Mutation p.T1367A 0.45 deleterious(0) benign(0.205) TCGA-ED-A8O5-01 11 82643852 82643852 G A C11orf82 Missense_Mutation p.S491N 0.47 tolerated(0.27) benign(0.196) TCGA-ED-A8O5-01 11 92577113 92577113 G A FAT3 Missense_Mutation p.G3527D 0.49 probably_damaging(1) TCGA-ED-A8O5-01 12 108029088 108029088 C T BTBD11 Silent p.C886C 0.43 TCGA-ED-A8O5-01 12 122677397 122677397 G A LRRC43 Missense_Mutation p.E399K 0.44 tolerated(0.3) benign(0.192) TCGA-ED-A8O5-01 12 5154614 5154614 T A KCNA5 Missense_Mutation p.L434Q 0.34 deleterious(0) probably_damaging(1) TCGA-ED-A8O5-01 12 51868193 51868193 G A SLC4A8 Missense_Mutation p.V658M 0.38 tolerated(0.06) benign(0.267) TCGA-ED-A8O5-01 12 6451116 6451116 G T TNFRSF1A 5'UTR 0.40 TCGA-ED-A8O5-01 12 9085395 9085395 C A PHC1 Missense_Mutation p.P448T 0.15 tolerated_low_confidence(0.27) unknown(0) TCGA-ED-A8O5-01 12 91347318 91347318 G A CCER1 Missense_Mutation p.A401V 0.38 tolerated(1) unknown(0) TCGA-ED-A8O5-01 13 100764310 100764310 A G PCCA Missense_Mutation p.S99G 0.38 tolerated(0.18) benign(0.002) TCGA-ED-A8O5-01 13 31035627 31035627 T G HMGB1 Missense_Mutation p.K172T 0.48 deleterious(0.01) unknown(0) TCGA-ED-A8O5-01 13 36049542 36049542 C T MAB21L1 Missense_Mutation p.G245D 0.48 deleterious(0.01) probably_damaging(0.988) TCGA-ED-A8O5-01 13 36245162 36245162 T A NBEA 3'UTR 0.38 TCGA-ED-A8O5-01 13 39261376 39261376 A T FREM2 5'UTR 0.39 TCGA-ED-A8O5-01 14 103410434 103410434 C T CDC42BPB Missense_Mutation p.G1401E 0.42 deleterious(0) probably_damaging(1) TCGA-ED-A8O5-01 14 30047494 30047494 T A PRKD1 Missense_Mutation p.H836L 0.38 deleterious(0) probably_damaging(0.999) TCGA-ED-A8O5-01 15 20588508 20588508 C A HERC2P3 RNA 0.24 TCGA-ED-A8O5-01 15 20588509 20588509 C A HERC2P3 RNA 0.23 TCGA-ED-A8O5-01 15 31334364 31334364 G A TRPM1 Missense_Mutation p.A643V 0.45 deleterious(0.01) benign(0.275) TCGA-ED-A8O5-01 15 42034793 42034793 A G MGA Silent p.K1545K 0.55 TCGA-ED-A8O5-01 15 43821446 43821446 T A MAP1A Missense_Mutation p.V2592E 0.46 possibly_damaging(0.736) TCGA-ED-A8O5-01 15 44487159 44487159 T C FRMD5 Missense_Mutation p.T32A 0.38 tolerated(0.56) benign(0.089) TCGA-ED-A8O5-01 15 48056061 48056061 C A SEMA6D Silent p.R254R 0.42 TCGA-ED-A8O5-01 15 48704920 48704920 C T FBN1 Missense_Mutation p.G2691D 0.33 probably_damaging(0.946) TCGA-ED-A8O5-01 15 50838872 50838872 C A USP50 5'UTR 0.39 TCGA-ED-A8O5-01 15 52497232 52497232 G A MYO5C Silent p.S1550S 0.42 TCGA-ED-A8O5-01 15 74494511 74494511 T C STRA6 Missense_Mutation p.E72G 0.44 tolerated(0.15) benign(0.015) TCGA-ED-A8O5-01 15 78768702 78768703 - T IREB2 Splice_Site p.X399_splice 0.27 TCGA-ED-A8O5-01 16 17228387 17228387 C A XYLT1 Missense_Mutation p.R657L 0.77 deleterious(0) probably_damaging(0.982) TCGA-ED-A8O5-01 16 3304270 3304270 C T MEFV Silent p.K266K 0.88 TCGA-ED-A8O5-01 16 348175 348175 C T AXIN1 Nonsense_Mutation p.W444* 0.87 TCGA-ED-A8O5-01 17 18284693 18284693 A T EVPLL Missense_Mutation p.S26C 0.43 deleterious(0.04) benign(0.228) TCGA-ED-A8O5-01 17 30665304 30665304 T G C17orf75 Silent p.T138T 0.40 TCGA-ED-A8O5-01 17 39644652 39644652 C T KRT36 Splice_Site p.X181_splice 0.45 TCGA-ED-A8O5-01 17 44806296 44806296 C T NSF Missense_Mutation p.P635L 0.33 deleterious(0) probably_damaging(0.994) TCGA-ED-A8O5-01 17 60558480 60558480 A T TLK2 Splice_Site 0.44 TCGA-ED-A8O5-01 17 63534461 63534461 T A AXIN2 Nonsense_Mutation p.R354* 0.48 TCGA-ED-A8O5-01 17 71361525 71361525 G A SDK2 Missense_Mutation p.A1726V 0.20 tolerated(0.08) benign(0.248) TCGA-ED-A8O5-01 17 76497424 76497424 C A DNAH17 Silent p.V1761V 0.47 TCGA-ED-A8O5-01 18 28720171 28720171 T C DSC1 Missense_Mutation p.T452A 0.41 tolerated(0.7) benign(0.032) TCGA-ED-A8O5-01 19 10959125 10959125 G A C19orf38 5'UTR 0.41 TCGA-ED-A8O5-01 19 14157256 14157256 C T IL27RA Missense_Mutation p.P323S 0.55 deleterious(0) probably_damaging(1) TCGA-ED-A8O5-01 19 14863218 14863218 G A EMR2 Silent p.L571L 0.41 TCGA-ED-A8O5-01 19 14910799 14910799 G A OR7C1 Silent p.C50C 0.46 TCGA-ED-A8O5-01 19 1784853 1784853 C G ATP8B3 Missense_Mutation p.V1209L 0.48 tolerated(0.35) benign(0.003) TCGA-ED-A8O5-01 19 22256300 22256300 A G ZNF257 Missense_Mutation p.T54A 0.50 tolerated(0.06) benign(0.035) TCGA-ED-A8O5-01 19 43414998 43414998 T A PSG6 Missense_Mutation p.K147M 0.55 deleterious(0.01) probably_damaging(0.989) TCGA-ED-A8O5-01 19 46282568 46282568 C T DMPK Missense_Mutation p.R139Q 0.46 tolerated(0.36) probably_damaging(0.999) TCGA-ED-A8O5-01 19 48201917 48201917 A T GLTSCR1 Missense_Mutation p.Q1092L 0.40 probably_damaging(0.994) TCGA-ED-A8O5-01 19 53793038 53793038 A C BIRC8 Missense_Mutation p.I197S 0.33 deleterious(0) probably_damaging(0.961) TCGA-ED-A8O5-01 19 54327156 54327156 T A NLRP12 Missense_Mutation p.R91S 0.41 tolerated(0.07) benign(0.093) TCGA-ED-A8O5-01 19 6586380 6586380 C A CD70 Missense_Mutation p.G78V 0.54 deleterious(0) benign(0.116) TCGA-ED-A8O5-01 19 7030633 7030633 C T MBD3L5 Missense_Mutation p.P4L 0.24 deleterious(0.05) possibly_damaging(0.532) TCGA-ED-A8O5-01 19 9225702 9225702 A T OR7G1 Silent p.S246S 0.36 TCGA-ED-A8O5-01 1 120462183 120462183 T G NOTCH2 Missense_Mutation p.S1845R 0.29 deleterious(0.03) possibly_damaging(0.575) TCGA-ED-A8O5-01 1 13497646 13497646 C T PRAMEF16 Nonsense_Mutation p.Q315* 0.26 TCGA-ED-A8O5-01 1 13743092 13743092 G A PRAMEF20 Missense_Mutation p.R94H 0.75 tolerated(0.37) benign(0.006) TCGA-ED-A8O5-01 1 144886225 144886225 C T PDE4DIP Silent p.Q1003Q 0.12 TCGA-ED-A8O5-01 1 152286383 152286383 C A FLG Nonsense_Mutation p.E327* 0.34 TCGA-ED-A8O5-01 1 152286384 152286384 C T FLG Nonsense_Mutation p.W326* 0.34 TCGA-ED-A8O5-01 1 153234342 153234342 C T LOR Missense_Mutation p.A306V 0.26 unknown(0) TCGA-ED-A8O5-01 1 156287032 156287032 G T CCT3 Missense_Mutation p.A300D 0.30 deleterious(0) probably_damaging(0.995) TCGA-ED-A8O5-01 1 160011297 160011297 G A KCNJ10 Silent p.L342L 0.26 TCGA-ED-A8O5-01 1 167343488 167343488 G A POU2F1 Silent p.T182T 0.30 TCGA-ED-A8O5-01 1 171511282 171511282 C T PRRC2C Silent p.N1557N 0.34 TCGA-ED-A8O5-01 1 171621369 171621369 C T MYOC Missense_Mutation p.R128Q 0.27 deleterious(0.04) possibly_damaging(0.59) TCGA-ED-A8O5-01 1 171751072 171751072 G A METTL13 5'UTR 0.27 TCGA-ED-A8O5-01 1 172560202 172560202 A G SUCO Silent p.A968A 0.29 TCGA-ED-A8O5-01 1 181765841 181765841 G A CACNA1E Silent p.E2082E 0.30 TCGA-ED-A8O5-01 1 190423953 190423953 A T BRINP3 Missense_Mutation p.L23Q 0.32 deleterious_low_confidence(0) benign(0.445) TCGA-ED-A8O5-01 1 22180823 22180823 C T HSPG2 Missense_Mutation p.R2101H 0.76 benign(0.413) TCGA-ED-A8O5-01 1 224380171 224380171 G A DEGS1 Silent p.V321V 0.23 TCGA-ED-A8O5-01 1 248004283 248004283 T A OR11L1 Nonsense_Mutation p.R306* 0.26 TCGA-ED-A8O5-01 1 26601548 26601548 A G CEP85 Missense_Mutation p.T630A 0.65 tolerated(0.35) benign(0.011) TCGA-ED-A8O5-01 1 52238325 52238325 C T OSBPL9 Missense_Mutation p.S377F 0.67 deleterious(0) probably_damaging(0.961) TCGA-ED-A8O5-01 20 17489605 17489605 G T BFSP1 Silent p.R222R 0.67 TCGA-ED-A8O5-01 20 18433306 18433306 C T DZANK1 Missense_Mutation p.A166T 0.27 tolerated(0.51) benign(0.082) TCGA-ED-A8O5-01 20 34067158 34067158 G A CEP250 Missense_Mutation p.A733T 0.30 benign(0.045) TCGA-ED-A8O5-01 20 62421227 62421227 G T ZBTB46 Missense_Mutation p.P295Q 0.33 deleterious(0) probably_damaging(1) TCGA-ED-A8O5-01 20 9510636 9510636 G A LAMP5 3'UTR 0.33 TCGA-ED-A8O5-01 21 41725592 41725592 G C DSCAM Missense_Mutation p.P245R 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-ED-A8O5-01 22 21348307 21348307 A T LZTR1 Missense_Mutation p.Q483L 0.38 tolerated(0.07) benign(0.016) TCGA-ED-A8O5-01 22 31851912 31851912 G A EIF4ENIF1 Missense_Mutation p.S342F 0.39 deleterious(0) probably_damaging(0.998) TCGA-ED-A8O5-01 2 128461241 128461241 A G WDR33 3'UTR 0.36 TCGA-ED-A8O5-01 2 167992505 167992505 C A XIRP2 Missense_Mutation p.D165E 0.43 benign(0.004) TCGA-ED-A8O5-01 2 170377511 170377511 T C KLHL41 Missense_Mutation p.I568T 0.26 deleterious(0) probably_damaging(0.993) TCGA-ED-A8O5-01 2 171323102 171323102 C A MYO3B Silent p.A965A 0.32 TCGA-ED-A8O5-01 2 1794793 1794793 C T MYT1L 3'Flank 0.48 TCGA-ED-A8O5-01 2 179639715 179639715 A T TTN Silent p.A2241A 0.51 TCGA-ED-A8O5-01 2 196822068 196822068 T C DNAH7 Missense_Mutation p.I999V 0.41 deleterious(0) probably_damaging(0.999) TCGA-ED-A8O5-01 2 203420413 203420413 G A BMPR2 Silent p.K675K 0.41 TCGA-ED-A8O5-01 2 222301170 222301170 A T EPHA4 Missense_Mutation p.F765L 0.41 tolerated(0.05) possibly_damaging(0.829) TCGA-ED-A8O5-01 2 241463346 241463346 G T ANKMY1 Missense_Mutation p.S507R 0.49 tolerated(0.29) benign(0.171) TCGA-ED-A8O5-01 2 25466768 25466768 T A DNMT3A Silent p.T645T 0.36 TCGA-ED-A8O5-01 2 29268229 29268229 G A FAM179A Missense_Mutation p.R892H 0.47 tolerated(0.05) benign(0.035) TCGA-ED-A8O5-01 2 61719528 61719528 G T XPO1 Missense_Mutation p.P552Q 0.42 deleterious(0) probably_damaging(1) TCGA-ED-A8O5-01 3 11064071 11064089 CGCTGGCCACTGGCCATCA - SLC6A1 Frame_Shift_Del p.L214Sfs*32 0.28 TCGA-ED-A8O5-01 3 130290002 130290002 C T COL6A6 Silent p.V914V 0.52 TCGA-ED-A8O5-01 3 148596536 148596536 G A CPA3 Splice_Site p.X158_splice 0.47 TCGA-ED-A8O5-01 3 53891011 53891011 G C IL17RB Missense_Mutation p.E224Q 0.46 deleterious(0.05) benign(0.104) TCGA-ED-A8O5-01 4 106614468 106614468 C T INTS12 Missense_Mutation p.C162Y 0.74 deleterious(0) probably_damaging(1) TCGA-ED-A8O5-01 4 110885652 110885652 G A EGF Missense_Mutation p.G512R 0.77 deleterious(0) probably_damaging(1) TCGA-ED-A8O5-01 4 113332992 113332992 A T ALPK1 Missense_Mutation p.R96W 0.74 deleterious(0) probably_damaging(0.938) TCGA-ED-A8O5-01 4 16077499 16077499 G A PROM1 Silent p.L11L 0.37 TCGA-ED-A8O5-01 4 23803848 23803848 C A PPARGC1A Nonsense_Mutation p.G714* 0.24 TCGA-ED-A8O5-01 4 48990664 48990664 C A CWH43 Missense_Mutation p.L72M 0.27 deleterious(0.01) probably_damaging(0.956) TCGA-ED-A8O5-01 4 88583327 88583327 A T DMP1 Nonsense_Mutation p.R133* 0.73 TCGA-ED-A8O5-01 4 93225734 93225734 A G GRID2 5'UTR 0.70 TCGA-ED-A8O5-01 5 100222044 100222044 C A ST8SIA4 Intron 0.40 TCGA-ED-A8O5-01 5 110835941 110835941 T C STARD4 Intron 0.47 TCGA-ED-A8O5-01 5 112179352 112179352 A T APC Silent p.S2687S 0.50 TCGA-ED-A8O5-01 5 115782745 115782745 G T SEMA6A Missense_Mutation p.A886D 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-ED-A8O5-01 5 126887403 126887403 A G PRRC1 Missense_Mutation p.Q378R 0.37 tolerated(0.07) benign(0.093) TCGA-ED-A8O5-01 5 138728542 138728542 G A PROB1 Silent p.R743R 0.08 TCGA-ED-A8O5-01 5 139494941 139494941 G A PURA 3'UTR 0.35 TCGA-ED-A8O5-01 5 139507512 139507514 AAG - IGIP 5'UTR 0.42 TCGA-ED-A8O5-01 5 150646346 150646346 A G GM2A Missense_Mutation p.T100A 0.32 deleterious(0) benign(0.003) TCGA-ED-A8O5-01 5 19473795 19473795 C A CDH18 Missense_Mutation p.R638L 0.31 deleterious(0) possibly_damaging(0.733) TCGA-ED-A8O5-01 5 19473796 19473796 G A CDH18 Missense_Mutation p.R638C 0.31 deleterious(0.01) probably_damaging(0.938) TCGA-ED-A8O5-01 5 26902662 26902662 T A CDH9 Silent p.V392V 0.48 TCGA-ED-A8O5-01 5 96031603 96031603 G A CAST Missense_Mutation p.A68T 0.45 tolerated(0.12) benign(0.392) TCGA-ED-A8O5-01 6 10924796 10924796 C A SYCP2L Silent p.V380V 0.18 TCGA-ED-A8O5-01 6 33766966 33766966 G T MLN Silent p.S50S 0.21 TCGA-ED-A8O5-01 6 36485547 36485547 T C STK38 Missense_Mutation p.Y154C 0.23 tolerated(0.18) probably_damaging(0.999) TCGA-ED-A8O5-01 6 41196780 41196780 C A TREML4 Missense_Mutation p.P131Q 0.13 deleterious(0) probably_damaging(0.993) TCGA-ED-A8O5-01 6 43417802 43417802 A C ABCC10 Silent p.G1484G 0.20 TCGA-ED-A8O5-01 7 103191647 103191647 G T RELN Missense_Mutation p.L2057I 0.46 tolerated(0.26) probably_damaging(0.991) TCGA-ED-A8O5-01 7 106781380 106781380 A G PRKAR2B Missense_Mutation p.N190S 0.38 deleterious(0) probably_damaging(0.986) TCGA-ED-A8O5-01 7 126542720 126542720 G C GRM8 Nonsense_Mutation p.Y344* 0.53 TCGA-ED-A8O5-01 7 143175007 143175007 C T TAS2R41 Silent p.S14S 0.39 TCGA-ED-A8O5-01 7 38505102 38505102 G C AMPH Missense_Mutation p.H238Q 0.46 tolerated(0.08) probably_damaging(0.979) TCGA-ED-A8O5-01 7 54621590 54621590 T A VSTM2A Intron 0.39 TCGA-ED-A8O5-01 7 73657534 73657534 T G RFC2 Missense_Mutation p.E159D 0.49 deleterious(0) possibly_damaging(0.816) TCGA-ED-A8O5-01 7 77408705 77408705 T A RSBN1L 3'UTR 0.14 TCGA-ED-A8O5-01 7 82996922 82996922 T A SEMA3E Missense_Mutation p.R770W 0.37 deleterious(0) probably_damaging(0.999) TCGA-ED-A8O5-01 8 133995633 133995633 G T TG Missense_Mutation p.V2080F 0.43 tolerated(0.06) benign(0.223) TCGA-ED-A8O5-01 8 144942786 144942786 C T EPPK1 Missense_Mutation p.E1546K 0.40 benign(0.101) TCGA-ED-A8O5-01 8 23104313 23104313 C G CHMP7 Missense_Mutation p.F35L 0.36 deleterious(0.01) possibly_damaging(0.88) TCGA-ED-A8O5-01 8 52232395 52232395 T A PXDNL 3'UTR 0.48 TCGA-ED-A8O5-01 8 62212267 62212267 G A CLVS1 5'UTR 0.42 TCGA-ED-A8O5-01 8 6912947 6912947 G A DEFA5 3'UTR 0.32 TCGA-ED-A8O5-01 9 107521626 107521626 A G NIPSNAP3A 3'UTR 0.38 TCGA-ED-A8O5-01 9 116958 116958 G A FOXD4 Missense_Mutation p.H388Y 0.22 deleterious(0) benign(0.185) TCGA-ED-A8O5-01 9 130485486 130485486 C T TTC16 Missense_Mutation p.A249V 0.50 tolerated(0.15) benign(0.017) TCGA-ED-A8O5-01 9 134357925 134357925 G T PRRC2B Missense_Mutation p.Q1717H 0.45 tolerated(0.18) possibly_damaging(0.707) TCGA-ED-A8O5-01 9 139390565 139390565 G C NOTCH1 Missense_Mutation p.S2542R 0.33 deleterious(0.02) possibly_damaging(0.675) TCGA-ED-A8O5-01 9 139617334 139617334 G T FAM69B Intron 0.56 TCGA-ED-A8O5-01 9 34723999 34723999 C A FAM205A Nonsense_Mutation p.E1080* 0.41 TCGA-ED-A8O5-01 9 34833061 34833061 C A FAM205B RNA 0.19 TCGA-ED-A8O5-01 9 5233727 5233727 A G INSL4 Silent p.S90S 0.47 TCGA-ED-A8O5-01 X 118675326 118675326 G A CXorf56 Missense_Mutation p.R191C 0.31 deleterious(0) probably_damaging(0.935) TCGA-ED-A8O5-01 X 129768966 129768966 T C ENOX2 Missense_Mutation p.K500E 0.39 tolerated(0.13) benign(0.069) TCGA-ED-A8O5-01 X 18276345 18276345 A G SCML2 Silent p.H364H 0.43 TCGA-ED-A8O5-01 X 20183141 20183141 T C RPS6KA3 Missense_Mutation p.Y547C 0.42 deleterious(0) probably_damaging(0.998) TCGA-ED-A8O5-01 X 20213230 20213230 T C RPS6KA3 Missense_Mutation p.D120G 0.35 tolerated(0.09) probably_damaging(0.969) TCGA-ED-A8O5-01 X 32663083 32663083 C T DMD Missense_Mutation p.E383K 0.46 possibly_damaging(0.828) TCGA-ED-A8O5-01 X 53112279 53112279 T C TSPYL2 Missense_Mutation p.V200A 0.39 tolerated(0.19) benign(0.01) TCGA-ED-A8O5-01 X 53579727 53579727 A T HUWE1 Silent p.T2874T 0.05 TCGA-ED-A8O5-01 X 57621970 57621970 T C ZXDB 3'UTR 0.33 TCGA-ED-A8O5-01 X 8667788 8667788 T C KAL1 Splice_Site p.X70_splice 0.35 TCGA-ED-A8O6-01 10 121338278 121338278 C T TIAL1 Nonsense_Mutation p.W189* 0.18 TCGA-ED-A8O6-01 10 127412384 127412385 - A EDRF1 Frame_Shift_Ins p.L133Tfs*26 0.46 TCGA-ED-A8O6-01 10 128147623 128147623 G T C10orf90 Missense_Mutation p.P628H 0.57 deleterious(0) probably_damaging(1) TCGA-ED-A8O6-01 10 29578015 29578015 C T LYZL1 5'UTR 0.27 TCGA-ED-A8O6-01 10 45486499 45486499 C T RASSF4 Silent p.G263G 0.55 TCGA-ED-A8O6-01 10 51584844 51584844 C T NCOA4 Missense_Mutation p.R331W 0.54 deleterious(0) benign(0.007) TCGA-ED-A8O6-01 10 73501563 73501563 G T CDH23 Missense_Mutation p.R1582L 0.05 deleterious(0.01) possibly_damaging(0.906) TCGA-ED-A8O6-01 10 81926706 81926706 C G ANXA11 Silent p.G228G 0.44 TCGA-ED-A8O6-01 10 98127805 98127805 A - TLL2 3'UTR 0.22 TCGA-ED-A8O6-01 11 5462670 5462670 G T OR51I1 Silent p.G25G 0.07 TCGA-ED-A8O6-01 11 68747517 68747517 G A MRGPRD Silent p.T313T 0.81 TCGA-ED-A8O6-01 12 108136024 108136024 T C PRDM4 Missense_Mutation p.Y528C 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-ED-A8O6-01 12 113874658 113874658 G C SDSL Silent p.V258V 0.40 TCGA-ED-A8O6-01 12 12974235 12974235 G A DDX47 Missense_Mutation p.R92H 0.36 tolerated(0.09) benign(0.043) TCGA-ED-A8O6-01 12 55641389 55641389 G T OR6C74 Silent p.G106G 0.37 TCGA-ED-A8O6-01 12 58186770 58186770 G T TSFM Missense_Mutation p.G183V 0.33 deleterious(0.02) benign(0.013) TCGA-ED-A8O6-01 12 76741192 76741192 T G BBS10 Silent p.S191S 0.29 TCGA-ED-A8O6-01 12 97051785 97051785 G T C12orf55 Missense_Mutation p.W1742C 0.38 deleterious(0) probably_damaging(0.947) TCGA-ED-A8O6-01 13 25283866 25283866 A T ATP12A Missense_Mutation p.Y894F 0.44 tolerated(0.12) possibly_damaging(0.64) TCGA-ED-A8O6-01 13 33232401 33232401 A T PDS5B Missense_Mutation p.Q113L 0.45 deleterious(0) possibly_damaging(0.639) TCGA-ED-A8O6-01 14 34029335 34029335 T A NPAS3 Missense_Mutation p.D159E 0.19 deleterious(0.03) benign(0.001) TCGA-ED-A8O6-01 14 57270981 57270981 G T OTX2 Silent p.A66A 0.25 TCGA-ED-A8O6-01 14 92472196 92472197 - T TRIP11 Frame_Shift_Ins p.N708Kfs*22 0.48 TCGA-ED-A8O6-01 14 93407963 93407963 C G ITPK1 Silent p.S396S 0.53 TCGA-ED-A8O6-01 15 20644321 20644321 G A HERC2P3 RNA 0.08 TCGA-ED-A8O6-01 15 50822035 50822035 T C USP50 Missense_Mutation p.I299V 0.34 tolerated(0.57) benign(0.002) TCGA-ED-A8O6-01 16 57555012 57555012 G T CCDC102A Missense_Mutation p.L297M 0.74 tolerated(0.07) possibly_damaging(0.865) TCGA-ED-A8O6-01 17 18344856 18344856 G A KRT16P1 RNA 0.36 TCGA-ED-A8O6-01 17 39888530 39888530 C T HAP1 Missense_Mutation p.M222I 0.26 tolerated(0.05) benign(0.043) TCGA-ED-A8O6-01 17 40344403 40344403 G A GHDC Missense_Mutation p.R249W 0.24 deleterious(0) probably_damaging(0.969) TCGA-ED-A8O6-01 17 8926432 8926432 C T NTN1 Missense_Mutation p.R248C 0.71 deleterious(0) probably_damaging(0.946) TCGA-ED-A8O6-01 19 15220134 15220134 A G SYDE1 Missense_Mutation p.D119G 0.23 deleterious(0.02) possibly_damaging(0.601) TCGA-ED-A8O6-01 19 17752293 17752293 C A UNC13A Missense_Mutation p.A849S 0.18 tolerated(0.25) benign(0.421) TCGA-ED-A8O6-01 19 18232564 18232564 G A MAST3 Silent p.S47S 0.07 TCGA-ED-A8O6-01 19 18499391 18499391 G A GDF15 Silent p.G191G 0.21 TCGA-ED-A8O6-01 19 4433231 4433231 G T CHAF1A Missense_Mutation p.A790S 0.24 tolerated(0.95) benign(0.032) TCGA-ED-A8O6-01 19 51171702 51171702 C A SHANK1 Missense_Mutation p.S1172I 0.50 unknown(0) TCGA-ED-A8O6-01 19 7117056 7117056 G A INSR 3'UTR 0.05 TCGA-ED-A8O6-01 1 115144131 115144131 T A DENND2C Nonsense_Mutation p.K605* 0.46 TCGA-ED-A8O6-01 1 156616637 156616637 C A BCAN Missense_Mutation p.Q46K 0.66 tolerated(0.85) benign(0.11) TCGA-ED-A8O6-01 1 185972870 185972870 A G HMCN1 Missense_Mutation p.T1457A 0.37 benign(0.003) TCGA-ED-A8O6-01 1 185988695 185988695 A G HMCN1 Silent p.S1831S 0.24 TCGA-ED-A8O6-01 1 186157140 186157140 G C HMCN1 Missense_Mutation p.G5514R 0.16 probably_damaging(0.997) TCGA-ED-A8O6-01 1 19401600 19401600 T A UBR4 Intron 0.62 TCGA-ED-A8O6-01 1 209796353 209796353 C T LAMB3 Missense_Mutation p.A844T 0.35 tolerated(1) benign(0.005) TCGA-ED-A8O6-01 1 22405002 22405002 G A CDC42 Missense_Mutation p.D11N 0.63 deleterious(0.03) benign(0.297) TCGA-ED-A8O6-01 1 38006245 38006245 A C SNIP1 Missense_Mutation p.S147A 0.41 tolerated(0.13) benign(0.004) TCGA-ED-A8O6-01 1 39789908 39789908 A G MACF1 Missense_Mutation p.K1432R 0.16 benign(0.236) TCGA-ED-A8O6-01 1 59247544 59247544 C A JUN 3'UTR 0.54 TCGA-ED-A8O6-01 1 70899550 70899550 A T CTH Missense_Mutation p.Q306L 0.15 deleterious(0.01) probably_damaging(0.982) TCGA-ED-A8O6-01 1 8073831 8073831 G A ERRFI1 Silent p.S276S 0.65 TCGA-ED-A8O6-01 1 86916392 86916392 T A CLCA2 Missense_Mutation p.Y711N 0.58 deleterious(0) probably_damaging(0.999) TCGA-ED-A8O6-01 20 10035112 10035112 A C ANKEF1 Missense_Mutation p.E679D 0.58 tolerated(0.33) benign(0.159) TCGA-ED-A8O6-01 20 330326 330326 C T NRSN2 Silent p.R13R 0.23 TCGA-ED-A8O6-01 20 39978710 39978710 C T LPIN3 Missense_Mutation p.R259W 0.48 tolerated(0.25) benign(0.002) TCGA-ED-A8O6-01 20 9510582 9510582 G T LAMP5 3'UTR 0.26 TCGA-ED-A8O6-01 21 10906928 10906928 C A TPTE Missense_Mutation p.D545Y 0.15 tolerated_low_confidence(0.55) benign(0.022) TCGA-ED-A8O6-01 21 33368209 33368209 C T HUNK Silent p.T478T 0.19 TCGA-ED-A8O6-01 22 19511459 19511477 CAGGTGGTGCACTGCGCGC A CLDN5 In_Frame_Del p.G186_C192delinsV 0.37 TCGA-ED-A8O6-01 22 32555161 32555161 G C C22orf42 Silent p.G14G 0.41 TCGA-ED-A8O6-01 22 50903443 50903443 T C SBF1 Missense_Mutation p.D440G 0.29 deleterious(0) probably_damaging(0.972) TCGA-ED-A8O6-01 2 11720965 11720965 C A GREB1 Intron 0.38 TCGA-ED-A8O6-01 2 216273051 216273051 T C FN1 Missense_Mutation p.S800G 0.37 deleterious(0.02) benign(0.096) TCGA-ED-A8O6-01 2 241463326 241463326 C T ANKMY1 Missense_Mutation p.R514Q 0.46 deleterious(0.03) benign(0.14) TCGA-ED-A8O6-01 2 241922310 241922310 C T AC104809.2 RNA 0.42 TCGA-ED-A8O6-01 2 242815105 242815105 G A CXXC11 Silent p.T466T 0.35 TCGA-ED-A8O6-01 2 45171797 45171797 G A SIX3 Silent p.T299T 0.22 TCGA-ED-A8O6-01 2 96943407 96943412 CCATTG - SNRNP200 In_Frame_Del p.S1932_G1934delinsR 0.34 TCGA-ED-A8O6-01 3 120369681 120369681 A T HGD Missense_Mutation p.I125K 0.24 deleterious(0.02) benign(0.121) TCGA-ED-A8O6-01 3 126153141 126153141 T G CCDC37 Missense_Mutation p.D515E 0.30 tolerated(0.15) benign(0.056) TCGA-ED-A8O6-01 3 183017980 183017980 G C MCF2L2 Missense_Mutation p.P373R 0.31 tolerated(0.26) benign(0.009) TCGA-ED-A8O6-01 3 45977942 45977942 C A FYCO1 Silent p.L1346L 0.54 TCGA-ED-A8O6-01 4 69962520 69962521 TA - UGT2B7 Frame_Shift_Del p.K95Efs*26 0.23 TCGA-ED-A8O6-01 4 95506024 95506024 G T PDLIM5 Intron 0.45 TCGA-ED-A8O6-01 5 111091584 111091584 A G NREP Intron 0.52 TCGA-ED-A8O6-01 5 134147507 134147507 A G DDX46 Missense_Mutation p.D803G 0.22 deleterious(0.05) probably_damaging(0.999) TCGA-ED-A8O6-01 5 139751849 139751849 G A SLC4A9 Missense_Mutation p.R922Q 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-ED-A8O6-01 5 140730929 140730929 C T PCDHGB1 Nonsense_Mutation p.R368* 0.57 TCGA-ED-A8O6-01 5 169412861 169412861 C A DOCK2 Missense_Mutation p.F976L 0.20 deleterious(0.01) probably_damaging(0.967) TCGA-ED-A8O6-01 6 108492696 108492696 C T NR2E1 Silent p.G20G 0.31 TCGA-ED-A8O6-01 6 167754181 167754181 T A TTLL2 Missense_Mutation p.F265I 0.25 deleterious(0) probably_damaging(0.999) TCGA-ED-A8O6-01 6 168352526 168352526 G T MLLT4 Nonsense_Mutation p.E1491* 0.68 TCGA-ED-A8O6-01 6 31842544 31842544 T C SLC44A4 Missense_Mutation p.Y141C 0.51 tolerated(0.1) possibly_damaging(0.447) TCGA-ED-A8O6-01 6 55623820 55623820 C T BMP5 Missense_Mutation p.A400T 0.48 deleterious(0) probably_damaging(0.999) TCGA-ED-A8O6-01 6 87725376 87725376 C A HTR1E Nonsense_Mutation p.C108* 0.33 TCGA-ED-A8O6-01 7 71175897 71175897 G A WBSCR17 Missense_Mutation p.R551H 0.14 tolerated(0.57) benign(0.414) TCGA-ED-A8O6-01 8 100443809 100443809 T C VPS13B Missense_Mutation p.S1043P 0.05 tolerated(0.08) benign(0.125) TCGA-ED-A8O6-01 8 108297043 108297043 C A ANGPT1 Missense_Mutation p.G358W 0.16 deleterious(0) probably_damaging(1) TCGA-ED-A8O6-01 8 144994165 144994165 C T PLEC Missense_Mutation p.R3412H 0.09 probably_damaging(0.978) TCGA-ED-A8O6-01 8 55047918 55047918 C T MRPL15 Silent p.A25A 0.29 TCGA-ED-A8O6-01 8 71128948 71128948 G A NCOA2 Silent p.P11P 0.14 TCGA-ED-A8O6-01 8 89209504 89209504 G A MMP16 Missense_Mutation p.P55L 0.13 deleterious(0.03) possibly_damaging(0.544) TCGA-ED-A8O6-01 9 114304927 114304927 G C ZNF483 Missense_Mutation p.R571T 0.51 tolerated(0.24) possibly_damaging(0.749) TCGA-ED-A8O6-01 9 135753738 135753738 C A C9orf9 5'Flank 0.41 TCGA-ED-A8O6-01 9 32572931 32572931 A - NDUFB6 Frame_Shift_Del p.M43Rfs*44 0.25 TCGA-ED-A8O6-01 X 83128066 83128066 A G CYLC1 Missense_Mutation p.K117R 0.30 tolerated(0.08) benign(0.263) TCGA-ED-A97K-01 10 71665571 71665571 G A COL13A1 Missense_Mutation p.G315D 0.37 deleterious(0) probably_damaging(1) TCGA-ED-A97K-01 10 98766408 98766408 C A SLIT1 Missense_Mutation p.Q1137H 0.38 deleterious(0) probably_damaging(0.997) TCGA-ED-A97K-01 11 107675444 107675444 C T SLC35F2 Missense_Mutation p.A262T 0.09 tolerated(0.43) benign(0.044) TCGA-ED-A97K-01 11 124120708 124120708 G T OR8G1 Nonsense_Mutation p.E96* 0.23 TCGA-ED-A97K-01 11 18382210 18382210 T A GTF2H1 Missense_Mutation p.C506S 0.04 tolerated(0.56) benign(0.003) TCGA-ED-A97K-01 11 77775039 77775039 C T THRSP Missense_Mutation p.R38W 0.11 tolerated(0.05) benign(0.092) TCGA-ED-A97K-01 12 25362794 25362794 C T KRAS 3'UTR 0.35 TCGA-ED-A97K-01 12 42858348 42858348 C T PRICKLE1 Silent p.R496R 0.25 TCGA-ED-A97K-01 12 59268266 59268266 T C LRIG3 Missense_Mutation p.M929V 0.15 tolerated_low_confidence(1) benign(0) TCGA-ED-A97K-01 12 8803187 8803187 T G MFAP5 Splice_Site p.X83_splice 0.06 TCGA-ED-A97K-01 12 90015489 90015489 T G ATP2B1 Missense_Mutation p.D475A 0.41 deleterious(0) probably_damaging(0.999) TCGA-ED-A97K-01 13 50589204 50589204 C T TRIM13 3'Flank 0.32 TCGA-ED-A97K-01 13 73649897 73649901 GATCG - KLF5 Frame_Shift_Del p.S417* 0.18 TCGA-ED-A97K-01 14 104216135 104216136 - T PPP1R13B Frame_Shift_Ins p.I322Nfs*64 0.32 TCGA-ED-A97K-01 14 45605599 45605599 C T FANCM Missense_Mutation p.A122V 0.24 deleterious(0) benign(0.189) TCGA-ED-A97K-01 14 60950469 60950469 G A C14orf39 Missense_Mutation p.T58I 0.07 tolerated(0.13) benign(0) TCGA-ED-A97K-01 15 64275864 64275864 G T DAPK2 Missense_Mutation p.A61E 0.48 deleterious(0.01) possibly_damaging(0.569) TCGA-ED-A97K-01 16 11348559 11348559 G A SOCS1 3'UTR 0.07 TCGA-ED-A97K-01 16 21123354 21123354 G A DNAH3 Missense_Mutation p.A627V 0.21 tolerated(0.27) benign(0.001) TCGA-ED-A97K-01 16 29828159 29828159 T A PAGR1 Missense_Mutation p.W105R 0.17 deleterious(0) probably_damaging(0.937) TCGA-ED-A97K-01 16 66583546 66583546 G A TK2 Intron 0.30 TCGA-ED-A97K-01 17 29587388 29587388 T - NF1 Frame_Shift_Del p.F1479Sfs*4 0.20 TCGA-ED-A97K-01 17 64298965 64298965 G A PRKCA 5'UTR 0.12 TCGA-ED-A97K-01 17 64302214 64302214 G C PRKCA Missense_Mutation p.W58C 0.11 deleterious(0.01) probably_damaging(0.991) TCGA-ED-A97K-01 19 46971595 46971595 C A PNMAL1 3'UTR 0.20 TCGA-ED-A97K-01 19 59027809 59027809 G A ZBTB45 Missense_Mutation p.T411M 0.30 deleterious(0) probably_damaging(0.992) TCGA-ED-A97K-01 19 7911402 7911402 C T EVI5L 5'Flank 0.40 TCGA-ED-A97K-01 1 120839624 120839624 G A FAM72B 5'UTR 0.05 TCGA-ED-A97K-01 1 150253252 150253252 G A C1orf54 3'UTR 0.19 TCGA-ED-A97K-01 1 152552238 152552238 G A LCE3D Missense_Mutation p.R59C 0.25 tolerated_low_confidence(0.08) unknown(0) TCGA-ED-A97K-01 1 177250365 177250365 G T BRINP2 Missense_Mutation p.V685F 0.33 deleterious(0) probably_damaging(0.996) TCGA-ED-A97K-01 1 209953899 209953899 T G TRAF3IP3 Missense_Mutation p.L466R 0.10 deleterious(0) possibly_damaging(0.576) TCGA-ED-A97K-01 1 226075235 226075235 C T LEFTY1 Missense_Mutation p.V201M 0.30 deleterious(0) probably_damaging(0.983) TCGA-ED-A97K-01 1 68512917 68512917 C T DIRAS3 Missense_Mutation p.A22T 0.07 tolerated(1) benign(0.001) TCGA-ED-A97K-01 20 19679226 19679226 G A SLC24A3 Missense_Mutation p.A541T 0.37 deleterious(0.02) probably_damaging(1) TCGA-ED-A97K-01 20 31973469 31973469 T C CDK5RAP1 Missense_Mutation p.K288R 0.21 tolerated(0.51) benign(0.005) TCGA-ED-A97K-01 20 4771204 4771204 G A RASSF2 Missense_Mutation p.R144C 0.33 deleterious(0.01) possibly_damaging(0.77) TCGA-ED-A97K-01 2 118865873 118865873 T A INSIG2 Missense_Mutation p.I218N 0.16 deleterious_low_confidence(0.01) benign(0.009) TCGA-ED-A97K-01 2 120712792 120712792 G T PTPN4 Nonsense_Mutation p.E625* 0.20 TCGA-ED-A97K-01 2 133541516 133541516 G A NCKAP5 Silent p.S956S 0.18 TCGA-ED-A97K-01 2 211473186 211473186 G A CPS1 Missense_Mutation p.S771N 0.25 deleterious(0.01) benign(0.052) TCGA-ED-A97K-01 2 234526724 234526724 G T UGT1A8 Missense_Mutation p.C124F 0.17 deleterious(0) probably_damaging(0.982) TCGA-ED-A97K-01 2 51254752 51254752 G A NRXN1 Silent p.G220G 0.19 TCGA-ED-A97K-01 3 170110356 170110356 A G SKIL 3'UTR 0.47 TCGA-ED-A97K-01 3 30713509 30713509 C - TGFBR2 Frame_Shift_Del p.Y306Mfs*19 0.27 TCGA-ED-A97K-01 3 53804516 53804516 G A CACNA1D Silent p.V1347V 0.35 TCGA-ED-A97K-01 3 71064720 71064720 T A FOXP1 Missense_Mutation p.E320D 0.14 tolerated(0.15) benign(0.004) TCGA-ED-A97K-01 4 126370127 126370127 C T FAT4 Silent p.Y2652Y 0.34 TCGA-ED-A97K-01 4 7844908 7844908 C A AFAP1 Missense_Mutation p.Q168H 0.35 deleterious(0) probably_damaging(1) TCGA-ED-A97K-01 5 113740180 113740180 A T KCNN2 Missense_Mutation p.T210S 0.14 tolerated(0.11) probably_damaging(0.973) TCGA-ED-A97K-01 5 140740865 140740865 G A PCDHGB2 Missense_Mutation p.G388E 0.25 tolerated(0.86) benign(0.06) TCGA-ED-A97K-01 5 150660677 150660677 C T SLC36A3 Missense_Mutation p.V389I 0.11 tolerated(0.06) possibly_damaging(0.538) TCGA-ED-A97K-01 5 178359427 178359427 G T ZFP2 Silent p.V371V 0.32 TCGA-ED-A97K-01 5 94922268 94922268 G T ARSK Silent p.V234V 0.16 TCGA-ED-A97K-01 6 29641328 29641328 C T ZFP57 Missense_Mutation p.R187H 0.26 tolerated(0.27) benign(0.041) TCGA-ED-A97K-01 6 37403498 37403498 C T CMTR1 Silent p.S31S 0.23 TCGA-ED-A97K-01 6 46644681 46644681 G A SLC25A27 3'UTR 0.38 TCGA-ED-A97K-01 6 56966388 56966388 A G ZNF451 Intron 0.31 TCGA-ED-A97K-01 6 82881038 82881038 C A IBTK 3'UTR 0.38 TCGA-ED-A97K-01 7 142641785 142641785 C T KEL Missense_Mutation p.R453H 0.25 tolerated(0.29) benign(0.031) TCGA-ED-A97K-01 7 95442633 95442633 C A DYNC1I1 Missense_Mutation p.L117M 0.32 tolerated(0.24) possibly_damaging(0.498) TCGA-ED-A97K-01 8 12580687 12580687 A G LONRF1 Missense_Mutation p.V747A 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-ED-A97K-01 8 3015485 3015485 G A CSMD1 Missense_Mutation p.R1950C 0.28 possibly_damaging(0.84) TCGA-ED-A97K-01 8 3216751 3216751 C T CSMD1 Missense_Mutation p.R1076H 0.25 probably_damaging(0.999) TCGA-ED-A97K-01 X 142718491 142718491 T C SLITRK4 Missense_Mutation p.Y145C 0.16 tolerated(0.18) benign(0.423) TCGA-ED-A97K-01 X 47104422 47104422 G A USP11 Silent p.P741P 0.40 TCGA-EP-A12J-01 10 101503802 101503802 C T CUTC Missense_Mutation p.R138C 0.48 deleterious(0) benign(0.15) TCGA-EP-A12J-01 10 85960359 85960359 C T CDHR1 Silent p.D147D 0.53 TCGA-EP-A12J-01 11 1016213 1016213 A G MUC6 Silent p.P2196P 0.38 TCGA-EP-A12J-01 11 65638628 65638628 C A EFEMP2 Missense_Mutation p.D123Y 0.35 deleterious(0.01) possibly_damaging(0.838) TCGA-EP-A12J-01 11 7506869 7506869 T A OLFML1 5'UTR 0.25 TCGA-EP-A12J-01 12 117768410 117768410 G A NOS1 Silent p.P155P 0.44 TCGA-EP-A12J-01 12 125453127 125453127 C A DHX37 Missense_Mutation p.G454V 0.50 tolerated(0.07) benign(0.027) TCGA-EP-A12J-01 12 83358835 83358835 C G TMTC2 Missense_Mutation p.A544G 0.39 tolerated(0.17) benign(0.005) TCGA-EP-A12J-01 12 88589455 88589455 A G TMTC3 3'UTR 0.32 TCGA-EP-A12J-01 12 89916794 89916794 A C GALNT4 Missense_Mutation p.N511K 0.50 tolerated(0.41) benign(0.002) TCGA-EP-A12J-01 14 74876039 74876039 C T SYNDIG1L Missense_Mutation p.E137K 0.55 tolerated(0.56) probably_damaging(0.98) TCGA-EP-A12J-01 15 23293467 23293467 T A HERC2P2 RNA 0.11 TCGA-EP-A12J-01 16 15808930 15808930 T - MYH11 Frame_Shift_Del p.G1882Afs*47 0.47 TCGA-EP-A12J-01 16 1884017 1884017 T A MEIOB 3'UTR 0.40 TCGA-EP-A12J-01 16 67213344 67213344 C T KIAA0895L Missense_Mutation p.R279Q 0.08 deleterious(0.03) possibly_damaging(0.654) TCGA-EP-A12J-01 16 88776355 88776355 C T CTU2 Silent p.F51F 0.45 TCGA-EP-A12J-01 17 49043568 49043568 G C SPAG9 3'UTR 0.42 TCGA-EP-A12J-01 17 7097812 7097812 G A DLG4 Missense_Mutation p.A478V 0.65 deleterious(0.01) probably_damaging(0.998) TCGA-EP-A12J-01 17 72344027 72344027 A G KIF19 Missense_Mutation p.I346V 0.71 deleterious(0) probably_damaging(0.998) TCGA-EP-A12J-01 17 72859044 72859044 G C FDXR Missense_Mutation p.D500E 0.44 tolerated(0.14) benign(0.037) TCGA-EP-A12J-01 17 80115731 80115731 G A CCDC57 Nonsense_Mutation p.Q712* 0.58 TCGA-EP-A12J-01 18 10471887 10471887 C T APCDD1 Silent p.A201A 0.38 TCGA-EP-A12J-01 18 581428 581428 C T CETN1 3'UTR 0.40 TCGA-EP-A12J-01 19 34791740 34791740 A C KIAA0355 Missense_Mutation p.Q121P 0.35 deleterious_low_confidence(0.01) probably_damaging(0.923) TCGA-EP-A12J-01 19 37879212 37879212 G T ZNF527 Missense_Mutation p.W87C 0.40 tolerated(0.06) probably_damaging(0.991) TCGA-EP-A12J-01 19 39328060 39328060 G C AC104534.3 Missense_Mutation p.L176V 0.39 deleterious(0.02) benign(0) TCGA-EP-A12J-01 19 45988879 45988879 G A RTN2 3'UTR 0.45 TCGA-EP-A12J-01 19 47155898 47155898 C T DACT3 Intron 0.20 TCGA-EP-A12J-01 19 54313461 54313461 G A NLRP12 Silent p.H484H 0.38 TCGA-EP-A12J-01 19 54602893 54602893 C A OSCAR Splice_Site p.X24_splice 0.44 TCGA-EP-A12J-01 1 114380291 114380291 A G PTPN22 Silent p.Y577Y 0.37 TCGA-EP-A12J-01 1 115524051 115524051 C T SYCP1 Missense_Mutation p.S826L 0.43 tolerated(0.08) benign(0.038) TCGA-EP-A12J-01 1 154960711 154960711 A C FLAD1 Missense_Mutation p.N168T 0.28 tolerated(0.34) benign(0.004) TCGA-EP-A12J-01 1 161596059 161596059 A C FCGR3B Missense_Mutation p.F187L 0.80 tolerated(0.67) benign(0.353) TCGA-EP-A12J-01 1 185089286 185089287 - A TRMT1L Frame_Shift_Ins p.L689Ffs*22 0.23 TCGA-EP-A12J-01 1 236368456 236368456 T A GPR137B Missense_Mutation p.F333I 0.35 deleterious(0.02) benign(0.198) TCGA-EP-A12J-01 1 237774079 237774079 G T RYR2 Silent p.S1567S 0.29 TCGA-EP-A12J-01 1 248263611 248263611 G T OR2L13 Nonsense_Mutation p.E312* 0.25 TCGA-EP-A12J-01 20 30227827 30227827 C T COX4I2 Silent p.N58N 0.56 TCGA-EP-A12J-01 20 33598060 33598060 G C TRPC4AP Missense_Mutation p.L481V 0.38 deleterious(0.02) possibly_damaging(0.519) TCGA-EP-A12J-01 20 3782976 3782976 A G CDC25B Missense_Mutation p.N383D 0.11 deleterious(0.02) benign(0.392) TCGA-EP-A12J-01 20 60878628 60878628 A G ADRM1 Missense_Mutation p.T2A 0.14 tolerated(0.5) benign(0.001) TCGA-EP-A12J-01 21 11049496 11049496 G A BAGE2 RNA 0.06 TCGA-EP-A12J-01 21 40800132 40800132 T C LCA5L Silent p.K96K 0.40 TCGA-EP-A12J-01 21 47773060 47773060 A G PCNT Missense_Mutation p.D500G 0.28 benign(0.082) TCGA-EP-A12J-01 22 32111160 32111160 T G PRR14L Missense_Mutation p.T889P 0.45 deleterious(0.04) benign(0.405) TCGA-EP-A12J-01 2 162627522 162627522 C T SLC4A10 Missense_Mutation p.R30C 0.42 deleterious(0.01) possibly_damaging(0.891) TCGA-EP-A12J-01 2 172693690 172693690 T C SLC25A12 Missense_Mutation p.I185V 0.41 deleterious(0.04) benign(0.027) TCGA-EP-A12J-01 2 21231993 21231994 - CTCTACC APOB Frame_Shift_Ins p.Q2583Gfs*9 0.23 TCGA-EP-A12J-01 2 219222266 219222286 AGCTACAGATGCTGTTCTTCT GG C2orf62 Frame_Shift_Del p.E43Gfs*18 0.54 TCGA-EP-A12J-01 2 71047619 71047619 G T CLEC4F Missense_Mutation p.Q13K 0.50 deleterious(0.01) possibly_damaging(0.687) TCGA-EP-A12J-01 2 85043137 85043137 G A DNAH6 Silent p.K4101K 0.38 TCGA-EP-A12J-01 3 126733602 126733602 C A PLXNA1 Silent p.A935A 0.44 TCGA-EP-A12J-01 3 150128513 150128513 C T TSC22D2 Missense_Mutation p.P459L 0.44 tolerated(0.47) benign(0.006) TCGA-EP-A12J-01 3 172098773 172098773 T C FNDC3B Silent p.L1065L 0.32 TCGA-EP-A12J-01 3 41266100 41266100 T G CTNNB1 Missense_Mutation p.S33A 0.44 deleterious(0) possibly_damaging(0.847) TCGA-EP-A12J-01 3 440785 440785 A T CHL1 Missense_Mutation p.L1113F 0.42 deleterious(0.02) probably_damaging(0.978) TCGA-EP-A12J-01 4 135121534 135121534 C A PABPC4L Missense_Mutation p.G272V 0.45 deleterious(0) probably_damaging(1) TCGA-EP-A12J-01 4 148457097 148457097 G A EDNRA Silent p.A272A 0.42 TCGA-EP-A12J-01 4 39310299 39310299 C A RFC1 Missense_Mutation p.W614C 0.44 deleterious(0) probably_damaging(1) TCGA-EP-A12J-01 5 115146946 115146946 T C CDO1 Silent p.T105T 0.39 TCGA-EP-A12J-01 5 140182753 140182753 C G PCDHA3 Silent p.P657P 0.46 TCGA-EP-A12J-01 5 169685155 169685155 A G LCP2 Missense_Mutation p.L329S 0.41 deleterious(0) possibly_damaging(0.735) TCGA-EP-A12J-01 5 171615063 171615063 G C STK10 5'UTR 0.48 TCGA-EP-A12J-01 5 175772304 175772304 C A SIMC1 Missense_Mutation p.F410L 0.41 deleterious(0.01) probably_damaging(0.991) TCGA-EP-A12J-01 5 175772305 175772305 C A SIMC1 Missense_Mutation p.R411S 0.41 tolerated(0.4) benign(0.39) TCGA-EP-A12J-01 5 72168474 72168474 C T TNPO1 Missense_Mutation p.A202V 0.45 deleterious(0.01) possibly_damaging(0.808) TCGA-EP-A12J-01 5 94839530 94839530 C T TTC37 Missense_Mutation p.E1069K 0.41 tolerated(0.05) possibly_damaging(0.484) TCGA-EP-A12J-01 6 31556795 31556795 C A NCR3 3'UTR 0.47 TCGA-EP-A12J-01 6 33657110 33657110 C A ITPR3 Missense_Mutation p.L2264I 0.40 tolerated(0.09) benign(0.017) TCGA-EP-A12J-01 6 46607278 46607278 C T CYP39A1 Silent p.L147L 0.42 TCGA-EP-A12J-01 6 56470829 56470829 C A DST Intron 0.37 TCGA-EP-A12J-01 7 107824934 107824934 G A NRCAM Silent p.R720R 0.38 TCGA-EP-A12J-01 7 123508467 123508467 C A HYAL4 Missense_Mutation p.P47H 0.44 deleterious(0) probably_damaging(0.999) TCGA-EP-A12J-01 7 151962169 151962169 G A KMT2C Missense_Mutation p.R380C 0.04 probably_damaging(0.999) TCGA-EP-A12J-01 7 40085553 40085553 T C CDK13 Silent p.G824G 0.46 TCGA-EP-A12J-01 7 77569480 77569480 C A PHTF2 Nonsense_Mutation p.S500* 0.37 TCGA-EP-A12J-01 7 98655111 98655111 T - SMURF1 Frame_Shift_Del p.K89Nfs*20 0.38 TCGA-EP-A12J-01 8 144734784 144734784 G T ZNF623 3'UTR 0.70 TCGA-EP-A12J-01 9 140201464 140201464 C A EXD3 Nonsense_Mutation p.E857* 0.33 TCGA-EP-A12J-01 X 152225435 152225435 A G PNMA3 Missense_Mutation p.D8G 0.89 deleterious(0.01) probably_damaging(0.924) TCGA-EP-A26S-01 10 124166157 124166157 G T PLEKHA1 Missense_Mutation p.V104L 0.43 deleterious(0.01) benign(0.172) TCGA-EP-A26S-01 10 124605313 124605313 G A CUZD1 Missense_Mutation p.S16F 0.35 tolerated_low_confidence(0.07) benign(0.317) TCGA-EP-A26S-01 10 128850978 128850978 C T DOCK1 Silent p.D724D 0.41 TCGA-EP-A26S-01 10 73610968 73610968 A T PSAP Missense_Mutation p.L4H 0.52 deleterious(0) benign(0.216) TCGA-EP-A26S-01 10 90438467 90438467 T G LIPF 3'UTR 0.47 TCGA-EP-A26S-01 11 118963906 118963907 CT - HMBS Frame_Shift_Del p.L334Gfs*24 0.32 TCGA-EP-A26S-01 11 1491556 1491556 C T MOB2 Missense_Mutation p.R218Q 0.40 tolerated(0.11) probably_damaging(0.951) TCGA-EP-A26S-01 11 62491884 62491884 T G HNRNPUL2 Missense_Mutation p.S185R 0.48 tolerated(0.52) benign(0.049) TCGA-EP-A26S-01 11 64434897 64434897 T C NRXN2 Silent p.G541G 0.08 TCGA-EP-A26S-01 11 68664055 68664055 C G MRPL21 Silent p.V108V 0.45 TCGA-EP-A26S-01 11 89069054 89069054 C G NOX4 Silent p.R525R 0.43 TCGA-EP-A26S-01 12 105557965 105557965 G A KIAA1033 Silent p.E1078E 0.39 TCGA-EP-A26S-01 12 116586413 116586413 T C MED13L Intron 0.67 TCGA-EP-A26S-01 12 122614579 122614579 T C MLXIP Missense_Mutation p.L277P 0.44 deleterious(0) probably_damaging(0.999) TCGA-EP-A26S-01 12 123214801 123214801 C T HCAR1 Missense_Mutation p.G29D 0.09 deleterious(0) probably_damaging(0.999) TCGA-EP-A26S-01 12 124377824 124377824 C T DNAH10 Silent p.L2896L 0.41 TCGA-EP-A26S-01 12 16189801 16189801 A C DERA 3'UTR 0.29 TCGA-EP-A26S-01 12 29659790 29659790 C T TMTC1 Missense_Mutation p.D880N 0.45 tolerated_low_confidence(0.06) benign(0.018) TCGA-EP-A26S-01 12 49960525 49960525 T C MCRS1 5'Flank 0.09 TCGA-EP-A26S-01 12 53071186 53071186 C A KRT1 Missense_Mutation p.D348Y 0.46 deleterious(0) probably_damaging(0.986) TCGA-EP-A26S-01 12 70149324 70149324 T G RAB3IP Missense_Mutation p.S62A 0.36 deleterious_low_confidence(0.04) benign(0.007) TCGA-EP-A26S-01 12 80933705 80933705 G A PTPRQ Missense_Mutation p.V1042I 0.45 tolerated(0.22) possibly_damaging(0.607) TCGA-EP-A26S-01 12 98938066 98938066 G A TMPO Missense_Mutation p.G241E 0.50 deleterious(0) probably_damaging(1) TCGA-EP-A26S-01 13 20567272 20567272 G A ZMYM2 Silent p.G20G 0.44 TCGA-EP-A26S-01 13 25946367 25946367 G T ATP8A2 Missense_Mutation p.G6V 0.53 tolerated_low_confidence(0.24) benign(0.003) TCGA-EP-A26S-01 13 98896898 98896898 A G FARP1 Intron 0.53 TCGA-EP-A26S-01 14 26917704 26917704 G T NOVA1 Missense_Mutation p.L329I 0.55 tolerated(0.41) benign(0.027) TCGA-EP-A26S-01 14 57070549 57070549 G A TMEM260 Missense_Mutation p.A121T 0.38 tolerated(0.06) possibly_damaging(0.867) TCGA-EP-A26S-01 14 62550920 62550920 G T SYT16 Missense_Mutation p.G481W 0.40 deleterious(0) possibly_damaging(0.741) TCGA-EP-A26S-01 14 63858560 63858560 C T PPP2R5E Nonsense_Mutation p.W310* 0.39 TCGA-EP-A26S-01 14 74409115 74409115 T A FAM161B Missense_Mutation p.H473L 0.40 tolerated(0.23) benign(0.146) TCGA-EP-A26S-01 14 81737182 81737182 A C STON2 Silent p.L815L 0.32 TCGA-EP-A26S-01 14 91338575 91338575 G C RPS6KA5 Missense_Mutation p.T751S 0.48 tolerated(0.67) possibly_damaging(0.899) TCGA-EP-A26S-01 15 45408389 45408389 C A DUOXA2 Missense_Mutation p.S91R 0.58 deleterious(0) probably_damaging(0.996) TCGA-EP-A26S-01 15 99491869 99491869 C G IGF1R Missense_Mutation p.N1218K 0.44 deleterious(0) probably_damaging(0.99) TCGA-EP-A26S-01 16 28734840 28734840 C - EIF3C Frame_Shift_Del p.L337Yfs*57 0.19 TCGA-EP-A26S-01 16 30977205 30977205 G T SETD1A Missense_Mutation p.R668L 0.39 benign(0.079) TCGA-EP-A26S-01 16 56701957 56701957 G A MT1G 5'UTR 0.30 TCGA-EP-A26S-01 17 46135846 46135846 G T NFE2L1 Missense_Mutation p.A388S 0.08 tolerated(0.69) benign(0.009) TCGA-EP-A26S-01 17 48046980 48046980 C T DLX4 Missense_Mutation p.P50S 0.48 tolerated(0.38) benign(0.444) TCGA-EP-A26S-01 17 72700898 72700898 C A CD300LF Missense_Mutation p.G34V 0.41 deleterious(0) probably_damaging(0.994) TCGA-EP-A26S-01 17 7734001 7734001 A G DNAH2 Missense_Mutation p.Y4024C 0.41 probably_damaging(1) TCGA-EP-A26S-01 18 13103583 13103583 T C CEP192 Missense_Mutation p.V2316A 0.11 deleterious(0.01) probably_damaging(0.93) TCGA-EP-A26S-01 18 29339767 29339767 G A SLC25A52 Silent p.I296I 0.35 TCGA-EP-A26S-01 18 61255920 61255920 G A SERPINB13 Missense_Mutation p.V7I 0.53 deleterious(0) benign(0.004) TCGA-EP-A26S-01 18 70534616 70534616 A G NETO1 5'UTR 0.44 TCGA-EP-A26S-01 18 76754127 76754127 C T SALL3 Silent p.C712C 0.40 TCGA-EP-A26S-01 19 10402010 10402010 C A ICAM5 Silent p.R115R 0.40 TCGA-EP-A26S-01 19 10794397 10794397 G T ILF3 Missense_Mutation p.G650V 0.29 tolerated(0.09) unknown(0) TCGA-EP-A26S-01 19 12886293 12886293 G A HOOK2 5'UTR 0.33 TCGA-EP-A26S-01 19 14705334 14705334 A T CLEC17A Missense_Mutation p.S95C 0.51 tolerated_low_confidence(0.18) benign(0.258) TCGA-EP-A26S-01 19 16131404 16131404 G A LINC00661 RNA 0.50 TCGA-EP-A26S-01 19 17950393 17950393 C T JAK3 Missense_Mutation p.R445Q 0.41 tolerated(0.22) benign(0.007) TCGA-EP-A26S-01 19 1997425 1997425 T C BTBD2 Missense_Mutation p.M149V 0.57 deleterious(0) possibly_damaging(0.747) TCGA-EP-A26S-01 19 21475947 21475947 T A ZNF708 3'UTR 0.61 TCGA-EP-A26S-01 19 21990784 21990784 T C ZNF43 Silent p.K685K 0.50 TCGA-EP-A26S-01 19 22363944 22363944 G T ZNF676 Missense_Mutation p.T192N 0.52 deleterious(0.03) probably_damaging(0.916) TCGA-EP-A26S-01 19 40895613 40895613 T C HIPK4 Missense_Mutation p.D66G 0.48 deleterious(0.01) probably_damaging(0.978) TCGA-EP-A26S-01 19 49558233 49558233 G A CGB7 Silent p.G16G 0.44 TCGA-EP-A26S-01 19 49573841 49573841 G A KCNA7 Missense_Mutation p.R284C 0.26 deleterious(0) probably_damaging(1) TCGA-EP-A26S-01 19 50387721 50387721 G A TBC1D17 Missense_Mutation p.V417I 0.50 deleterious(0.03) probably_damaging(0.999) TCGA-EP-A26S-01 19 56735066 56735066 T C ZSCAN5A Silent p.P174P 0.50 TCGA-EP-A26S-01 19 57133787 57133787 G T ZNF71 Missense_Mutation p.G378C 0.38 deleterious(0.01) probably_damaging(1) TCGA-EP-A26S-01 1 118166739 118166739 T A FAM46C 3'UTR 0.45 TCGA-EP-A26S-01 1 158576688 158576688 C T OR10Z1 Missense_Mutation p.L154F 0.26 tolerated(0.1) benign(0.008) TCGA-EP-A26S-01 1 158605719 158605719 C G SPTA1 Missense_Mutation p.E1806Q 0.80 tolerated(0.64) possibly_damaging(0.861) TCGA-EP-A26S-01 1 158670099 158670099 G C OR6K2 Missense_Mutation p.T115R 0.55 deleterious(0) possibly_damaging(0.836) TCGA-EP-A26S-01 1 160165795 160165795 A G CASQ1 Missense_Mutation p.N254D 0.10 tolerated(0.5) benign(0.001) TCGA-EP-A26S-01 1 167971772 167971772 C T DCAF6 Missense_Mutation p.T319I 0.29 deleterious(0) probably_damaging(0.991) TCGA-EP-A26S-01 1 182873386 182873386 C T SHCBP1L Missense_Mutation p.E506K 0.22 deleterious(0.01) possibly_damaging(0.834) TCGA-EP-A26S-01 1 186097385 186097385 C T HMCN1 Missense_Mutation p.P4289L 0.40 probably_damaging(0.999) TCGA-EP-A26S-01 1 206902164 206902166 GGA - MAPKAPK2 In_Frame_Del p.R131del 0.35 TCGA-EP-A26S-01 1 248814007 248814007 T A OR2T27 Missense_Mutation p.Y60F 0.12 deleterious(0.01) possibly_damaging(0.452) TCGA-EP-A26S-01 20 62122018 62122018 C A EEF1A2 Silent p.A281A 0.62 TCGA-EP-A26S-01 21 11039320 11039320 C T BAGE2 RNA 0.08 TCGA-EP-A26S-01 21 43291640 43291640 C T PRDM15 Silent p.A168A 0.08 TCGA-EP-A26S-01 21 46086223 46086223 T C KRTAP12-2 3'UTR 0.09 TCGA-EP-A26S-01 22 20784723 20784723 C T SCARF2 Missense_Mutation p.G399R 0.63 deleterious(0) probably_damaging(1) TCGA-EP-A26S-01 22 29704470 29704470 G T GAS2L1 Missense_Mutation p.E125D 0.31 tolerated(0.45) probably_damaging(0.996) TCGA-EP-A26S-01 22 38120914 38120914 A G TRIOBP Missense_Mutation p.N784S 0.52 tolerated_low_confidence(0.12) benign(0.009) TCGA-EP-A26S-01 22 41560092 41560092 A T EP300 Missense_Mutation p.H1255L 0.46 probably_damaging(0.999) TCGA-EP-A26S-01 22 51010728 51010728 G C CPT1B Missense_Mutation p.D454E 0.45 deleterious(0) probably_damaging(0.993) TCGA-EP-A26S-01 2 131673441 131673441 T C ARHGEF4 5'Flank 0.11 TCGA-EP-A26S-01 2 168100450 168100450 T C XIRP2 Silent p.L850L 0.39 TCGA-EP-A26S-01 2 168104420 168104420 G T XIRP2 Missense_Mutation p.G2173V 0.48 benign(0.077) TCGA-EP-A26S-01 2 179560596 179560596 A G TTN Silent p.Y10401Y 0.44 TCGA-EP-A26S-01 2 198267360 198267360 T G SF3B1 Missense_Mutation p.K666T 0.45 deleterious(0) probably_damaging(0.994) TCGA-EP-A26S-01 2 202245315 202245315 G A TRAK2 Missense_Mutation p.A899V 0.40 tolerated(0.07) benign(0.003) TCGA-EP-A26S-01 2 202245316 202245316 C G TRAK2 Missense_Mutation p.A899P 0.43 tolerated(0.09) benign(0.005) TCGA-EP-A26S-01 2 242003530 242003530 C A SNED1 Missense_Mutation p.H863N 0.11 tolerated(0.07) benign(0.075) TCGA-EP-A26S-01 2 27498130 27498130 A G DNAJC5G 5'Flank 0.09 TCGA-EP-A26S-01 2 27688641 27688641 T G IFT172 Missense_Mutation p.T601P 0.45 deleterious(0) possibly_damaging(0.779) TCGA-EP-A26S-01 2 44099245 44099245 G T ABCG8 Silent p.T365T 0.43 TCGA-EP-A26S-01 2 86080208 86080208 A T ST3GAL5 Intron 0.57 TCGA-EP-A26S-01 2 97359397 97359397 G A FER1L5 RNA 0.52 TCGA-EP-A26S-01 3 15604875 15604875 C G HACL1 Missense_Mutation p.R565P 0.50 deleterious(0) probably_damaging(0.988) TCGA-EP-A26S-01 3 19554731 19554731 C T KCNH8 Silent p.P783P 0.32 TCGA-EP-A26S-01 3 197403762 197403762 T C KIAA0226 Silent p.R880R 0.09 TCGA-EP-A26S-01 3 41266125 41266125 C T CTNNB1 Missense_Mutation p.T41I 0.46 deleterious(0) probably_damaging(0.931) TCGA-EP-A26S-01 3 49836194 49836194 T C CDHR4 Intron 0.39 TCGA-EP-A26S-01 3 49867199 49867199 C T TRAIP Missense_Mutation p.E363K 0.56 tolerated(0.75) benign(0.002) TCGA-EP-A26S-01 3 64582656 64582656 G C ADAMTS9 Silent p.T1343T 0.56 TCGA-EP-A26S-01 3 85984981 85984981 G T CADM2 Missense_Mutation p.L248F 0.42 deleterious(0) probably_damaging(0.996) TCGA-EP-A26S-01 4 183267884 183267884 C T TENM3 Missense_Mutation p.L105F 0.42 tolerated_low_confidence(0.08) possibly_damaging(0.849) TCGA-EP-A26S-01 4 30726038 30726038 T A PCDH7 Silent p.S998S 0.33 TCGA-EP-A26S-01 4 39553765 39553765 G A SMIM14 Missense_Mutation p.P94L 0.42 deleterious(0) possibly_damaging(0.908) TCGA-EP-A26S-01 4 46390683 46390684 AG T GABRA2 Frame_Shift_Del p.L14Ifs*61 0.27 TCGA-EP-A26S-01 4 69682095 69682095 G C UGT2B10 Missense_Mutation p.D120H 0.40 deleterious(0.02) benign(0.349) TCGA-EP-A26S-01 4 73990633 73990633 C T ANKRD17 Silent p.Q1163Q 0.40 TCGA-EP-A26S-01 4 74279198 74279198 G T ALB Missense_Mutation p.C302F 0.45 deleterious(0) probably_damaging(1) TCGA-EP-A26S-01 4 79494388 79494388 G T ANXA3 Missense_Mutation p.A24S 0.52 deleterious(0.02) probably_damaging(1) TCGA-EP-A26S-01 5 10390611 10390611 A G MARCH6 Missense_Mutation p.E192G 0.08 tolerated(0.1) benign(0.035) TCGA-EP-A26S-01 5 1094302 1094302 G T SLC12A7 Missense_Mutation p.S62R 0.31 tolerated(0.19) benign(0.001) TCGA-EP-A26S-01 5 125819257 125819257 A C GRAMD3 Missense_Mutation p.N295H 0.41 tolerated(0.2) benign(0.033) TCGA-EP-A26S-01 5 140309115 140309115 G A PCDHAC1 Intron 0.37 TCGA-EP-A26S-01 5 16701447 16701447 T C MYO10 Silent p.R1019R 0.46 TCGA-EP-A26S-01 5 176562164 176562164 G A NSD1 Silent p.V20V 0.33 TCGA-EP-A26S-01 5 37815756 37815756 G A GDNF Silent p.I228I 0.27 TCGA-EP-A26S-01 5 54637586 54637586 T C SKIV2L2 Silent p.Y256Y 0.42 TCGA-EP-A26S-01 5 70671812 70671812 T C RP11-136K7.2 Intron 0.36 TCGA-EP-A26S-01 6 111318428 111318428 G A RPF2 Missense_Mutation p.G93S 0.37 tolerated(0.11) probably_damaging(0.982) TCGA-EP-A26S-01 6 121615804 121615804 T C TBC1D32 Silent p.V381V 0.06 TCGA-EP-A26S-01 6 146264776 146264776 C A SHPRH Missense_Mutation p.V581F 0.40 tolerated_low_confidence(0.07) benign(0.126) TCGA-EP-A26S-01 6 151161944 151161944 T G PLEKHG1 Missense_Mutation p.L1357R 0.37 deleterious(0) probably_damaging(0.969) TCGA-EP-A26S-01 6 33144048 33144048 A T COL11A2 Missense_Mutation p.H648Q 0.43 benign(0.402) TCGA-EP-A26S-01 6 33385851 33385851 G C CUTA Intron 0.35 TCGA-EP-A26S-01 6 44223037 44223037 G A SLC35B2 Silent p.Y235Y 0.44 TCGA-EP-A26S-01 6 55620323 55620323 A G BMP5 3'UTR 0.32 TCGA-EP-A26S-01 6 96657764 96657764 C A FUT9 3'UTR 0.24 TCGA-EP-A26S-01 6 99322272 99322272 G T FBXL4 Missense_Mutation p.S583Y 0.45 deleterious(0.01) benign(0.309) TCGA-EP-A26S-01 7 108131857 108131857 A T PNPLA8 Silent p.P560P 0.35 TCGA-EP-A26S-01 7 24705683 24705683 G C MPP6 Missense_Mutation p.M309I 0.46 tolerated(0.28) benign(0.009) TCGA-EP-A26S-01 7 5967916 5967916 T C RSPH10B Silent p.E781E 0.29 TCGA-EP-A26S-01 7 87051459 87051459 G A ABCB4 Missense_Mutation p.S765F 0.20 deleterious(0.03) benign(0.335) TCGA-EP-A26S-01 7 99818613 99818613 C A PVRIG Nonsense_Mutation p.C240* 0.31 TCGA-EP-A26S-01 8 53085085 53085085 G T ST18 Silent p.S112S 0.13 TCGA-EP-A26S-01 9 131256871 131256871 A C ODF2 Missense_Mutation p.E612A 0.37 deleterious(0.04) benign(0.331) TCGA-EP-A26S-01 9 15048007 15048007 G T RP11-54D18.3 RNA 0.40 TCGA-EP-A26S-01 9 37428607 37428607 T G GRHPR Intron 0.33 TCGA-EP-A26S-01 9 89763702 89763702 G T C9orf170 Silent p.G19G 0.43 TCGA-EP-A26S-01 X 107844710 107844710 T C COL4A5 Missense_Mutation p.L679P 0.09 unknown(0) TCGA-EP-A26S-01 X 150908161 150908161 G A CNGA2 Missense_Mutation p.G111R 0.10 tolerated(0.09) benign(0.391) TCGA-EP-A26S-01 X 69644840 69644840 C T GDPD2 Silent p.A2A 0.94 TCGA-EP-A26S-01 X 77913190 77913190 G T ZCCHC5 Missense_Mutation p.T243N 0.91 deleterious(0.01) benign(0.036) TCGA-EP-A2KA-01 10 101567952 101567952 G A ABCC2 Missense_Mutation p.S594N 0.32 tolerated(0.95) benign(0.258) TCGA-EP-A2KA-01 10 135087474 135087474 G A ADAM8 Missense_Mutation p.T96M 0.27 deleterious(0.03) probably_damaging(0.957) TCGA-EP-A2KA-01 10 43015384 43015384 C A ZNF37BP RNA 0.31 TCGA-EP-A2KA-01 11 10603489 10603489 G A MRVI1 Missense_Mutation p.A762V 0.43 tolerated(0.89) benign(0.002) TCGA-EP-A2KA-01 11 109296307 109296307 T C C11orf87 3'UTR 0.31 TCGA-EP-A2KA-01 11 117161738 117161739 - C BACE1 Frame_Shift_Ins p.L324Afs*28 0.26 TCGA-EP-A2KA-01 11 117374691 117374691 C T DSCAML1 Missense_Mutation p.R803H 0.29 tolerated(0.06) probably_damaging(0.969) TCGA-EP-A2KA-01 11 118842683 118842683 C A FOXR1 Silent p.L14L 0.52 TCGA-EP-A2KA-01 11 122830087 122830087 A G C11orf63 Missense_Mutation p.I757M 0.07 tolerated(0.18) benign(0.037) TCGA-EP-A2KA-01 11 122930222 122930222 T C HSPA8 Missense_Mutation p.N360S 0.09 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-EP-A2KA-01 11 123901212 123901212 A T OR10G8 Nonsense_Mutation p.K295* 0.30 TCGA-EP-A2KA-01 11 124134976 124134976 G A OR8G5 Missense_Mutation p.G85E 0.28 tolerated(0.08) benign(0.041) TCGA-EP-A2KA-01 11 18253136 18253136 C A SAA4 Silent p.S102S 0.23 TCGA-EP-A2KA-01 11 24759781 24759781 C G LUZP2 Missense_Mutation p.S89C 0.31 deleterious(0) probably_damaging(0.997) TCGA-EP-A2KA-01 11 46896443 46896443 G T LRP4 Silent p.V1379V 0.27 TCGA-EP-A2KA-01 11 60292725 60292725 A T MS4A13 Missense_Mutation p.I78F 0.34 deleterious(0.03) benign(0.138) TCGA-EP-A2KA-01 11 66031564 66031564 G T KLC2 Silent p.L330L 0.13 TCGA-EP-A2KA-01 11 67818045 67818045 C A TCIRG1 Silent p.I776I 0.41 TCGA-EP-A2KA-01 11 8642090 8642090 C T TRIM66 Missense_Mutation p.S1045N 0.26 tolerated(1) probably_damaging(0.998) TCGA-EP-A2KA-01 11 92533159 92533159 T C FAT3 Missense_Mutation p.V2327A 0.38 benign(0.007) TCGA-EP-A2KA-01 11 92616016 92616016 T C FAT3 Missense_Mutation p.Y4132H 0.27 benign(0.003) TCGA-EP-A2KA-01 12 109523796 109523796 A C USP30 3'UTR 0.63 TCGA-EP-A2KA-01 12 123880916 123880924 TCGCAAACT - SETD8 In_Frame_Del p.R179_L181del 0.40 TCGA-EP-A2KA-01 12 12510356 12510356 C T LOH12CR1 5'UTR 0.08 TCGA-EP-A2KA-01 12 5153812 5153812 C T KCNA5 Missense_Mutation p.R167C 0.41 deleterious(0) probably_damaging(0.999) TCGA-EP-A2KA-01 12 56558092 56558093 - GT SMARCC2 Frame_Shift_Ins p.L1188Hfs*96 0.29 TCGA-EP-A2KA-01 12 57573622 57573622 C G LRP1 Missense_Mutation p.T1675R 0.24 probably_damaging(0.998) TCGA-EP-A2KA-01 13 101322680 101322680 A G TMTC4 5'UTR 0.21 TCGA-EP-A2KA-01 13 36239245 36239245 G A NBEA Missense_Mutation p.V2775I 0.30 tolerated(1) benign(0.011) TCGA-EP-A2KA-01 13 36909272 36909272 A - SPG20 Frame_Shift_Del p.F232Lfs*2 0.12 TCGA-EP-A2KA-01 14 102494143 102494143 C A DYNC1H1 Missense_Mutation p.A3079E 0.21 probably_damaging(0.955) TCGA-EP-A2KA-01 14 102805186 102805186 C A ZNF839 Silent p.R565R 0.24 TCGA-EP-A2KA-01 14 105267670 105267670 A G ZBTB42 Missense_Mutation p.S46G 0.15 deleterious(0) probably_damaging(0.989) TCGA-EP-A2KA-01 14 20483233 20483233 C A OR4K14 Silent p.L40L 0.33 TCGA-EP-A2KA-01 14 91700499 91700499 C T GPR68 Missense_Mutation p.R299H 0.35 deleterious(0.03) benign(0.174) TCGA-EP-A2KA-01 14 92911658 92911658 C G SLC24A4 Intron 0.16 TCGA-EP-A2KA-01 15 33855056 33855056 G T RYR3 Missense_Mutation p.D331Y 0.32 probably_damaging(0.926) TCGA-EP-A2KA-01 15 49320786 49320786 G C SECISBP2L Missense_Mutation p.P253R 0.34 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-EP-A2KA-01 15 55664085 55664085 C T CCPG1 Silent p.K204K 0.17 TCGA-EP-A2KA-01 15 65621487 65621487 C A IGDCC3 Splice_Site p.X736_splice 0.35 TCGA-EP-A2KA-01 16 2339468 2339468 C T ABCA3 Silent p.E889E 0.25 TCGA-EP-A2KA-01 16 28167437 28167437 T A XPO6 Missense_Mutation p.N352I 0.32 deleterious(0.01) possibly_damaging(0.491) TCGA-EP-A2KA-01 16 30124047 30124047 C T GDPD3 Missense_Mutation p.V84M 0.32 deleterious(0) probably_damaging(0.98) TCGA-EP-A2KA-01 16 3367499 3367499 C G ZNF75A Missense_Mutation p.S174C 0.30 deleterious(0) probably_damaging(0.984) TCGA-EP-A2KA-01 16 86612739 86612739 A C FOXL1 Missense_Mutation p.N137T 0.09 deleterious(0) probably_damaging(0.976) TCGA-EP-A2KA-01 16 86612753 86612753 A G FOXL1 Missense_Mutation p.K142E 0.13 deleterious(0) probably_damaging(0.973) TCGA-EP-A2KA-01 16 90161594 90161594 G T TUBB8P7 RNA 0.16 TCGA-EP-A2KA-01 17 17801962 17801962 T C TOM1L2 Missense_Mutation p.K55R 0.41 tolerated(0.15) benign(0.07) TCGA-EP-A2KA-01 17 20107661 20107661 C G SPECC1 Missense_Mutation p.T100S 0.38 tolerated(0.44) benign(0.005) TCGA-EP-A2KA-01 17 21320718 21320718 G A KCNJ12 3'UTR 0.20 TCGA-EP-A2KA-01 17 27580737 27580737 C T CRYBA1 Missense_Mutation p.P146L 0.18 deleterious(0) probably_damaging(0.996) TCGA-EP-A2KA-01 17 29192785 29192785 T C ATAD5 Missense_Mutation p.I1067T 0.27 deleterious(0) benign(0.196) TCGA-EP-A2KA-01 17 41924620 41924620 G A CD300LG Silent p.L12L 0.26 TCGA-EP-A2KA-01 17 48913333 48913333 G A WFIKKN2 Missense_Mutation p.R12H 0.39 tolerated_low_confidence(0.22) benign(0) TCGA-EP-A2KA-01 17 73100204 73100204 G C SLC16A5 Silent p.A431A 0.27 TCGA-EP-A2KA-01 17 7749921 7749921 C T KDM6B Missense_Mutation p.R192W 0.41 unknown(0) TCGA-EP-A2KA-01 18 47803368 47803368 C A MBD1 Missense_Mutation p.A76S 0.20 tolerated(0.16) benign(0.021) TCGA-EP-A2KA-01 18 54349915 54349915 C - WDR7 Frame_Shift_Del p.Q118Sfs*35 0.21 TCGA-EP-A2KA-01 19 10157854 10157854 A G C3P1 RNA 0.21 TCGA-EP-A2KA-01 19 1969726 1969726 G - CSNK1G2 5'UTR 0.32 TCGA-EP-A2KA-01 19 21933647 21933647 C A ZNF100 Intron 0.38 TCGA-EP-A2KA-01 19 36229093 36229093 G T KMT2B Splice_Site p.X2624_splice 0.33 TCGA-EP-A2KA-01 19 37677107 37677107 C T ZNF585B Silent p.G444G 0.31 TCGA-EP-A2KA-01 19 41206291 41206291 C A ADCK4 Missense_Mutation p.R320L 0.35 deleterious(0.02) probably_damaging(0.993) TCGA-EP-A2KA-01 19 43858024 43858024 C G CD177 Missense_Mutation p.C24W 0.28 deleterious(0) probably_damaging(1) TCGA-EP-A2KA-01 19 46216794 46216794 T G FBXO46 5'UTR 0.26 TCGA-EP-A2KA-01 19 46498359 46498359 C A CCDC61 5'Flank 0.18 TCGA-EP-A2KA-01 19 49636569 49636569 G A PPFIA3 Missense_Mutation p.A368T 0.16 deleterious(0.01) benign(0.21) TCGA-EP-A2KA-01 19 5216748 5216748 G A PTPRS Missense_Mutation p.P1360L 0.19 tolerated_low_confidence(0.08) benign(0.015) TCGA-EP-A2KA-01 19 53208076 53208076 A G ZNF611 3'UTR 0.27 TCGA-EP-A2KA-01 1 10471547 10471547 A T PGD Missense_Mutation p.I198F 0.38 deleterious(0) probably_damaging(0.95) TCGA-EP-A2KA-01 1 111061042 111061042 T C KCNA10 Missense_Mutation p.D123G 0.17 deleterious(0) probably_damaging(1) TCGA-EP-A2KA-01 1 13475005 13475005 C T PRAMEF18 Missense_Mutation p.R375H 0.25 tolerated(0.45) benign(0.002) TCGA-EP-A2KA-01 1 153029108 153029108 G T SPRR2A Missense_Mutation p.P35H 0.19 deleterious_low_confidence(0) unknown(0) TCGA-EP-A2KA-01 1 156280946 156280946 C T CCT3 Missense_Mutation p.R399H 0.15 deleterious(0) benign(0.167) TCGA-EP-A2KA-01 1 157504329 157504330 - A FCRL5 Intron 0.09 TCGA-EP-A2KA-01 1 159558025 159558025 A T APCS Missense_Mutation p.S67C 0.07 deleterious(0.01) probably_damaging(0.918) TCGA-EP-A2KA-01 1 160648872 160648872 C T CD48 Silent p.V234V 0.31 TCGA-EP-A2KA-01 1 19407897 19407897 C T UBR4 Missense_Mutation p.R5060Q 0.12 benign(0.061) TCGA-EP-A2KA-01 1 225440023 225440023 G A DNAH14 Missense_Mutation p.E1830K 0.46 tolerated(0.24) benign(0.064) TCGA-EP-A2KA-01 1 40148167 40148167 C A HPCAL4 3'UTR 0.23 TCGA-EP-A2KA-01 1 47264911 47264911 G A CYP4B1 Nonsense_Mutation p.W53* 0.37 TCGA-EP-A2KA-01 1 6292060 6292060 C A ICMT Nonsense_Mutation p.E192* 0.24 TCGA-EP-A2KA-01 1 68512864 68512864 G A DIRAS3 Silent p.R39R 0.27 TCGA-EP-A2KA-01 20 20055874 20055874 T C C20orf26 Missense_Mutation p.L138P 0.29 deleterious(0) probably_damaging(0.998) TCGA-EP-A2KA-01 20 34288878 34288878 A G ROMO1 3'UTR 0.22 TCGA-EP-A2KA-01 20 46264392 46264392 T G NCOA3 Missense_Mutation p.I480S 0.25 deleterious(0.05) benign(0.322) TCGA-EP-A2KA-01 20 46265318 46265320 AAG - NCOA3 In_Frame_Del p.K732del 0.22 TCGA-EP-A2KA-01 21 34617294 34617294 C T IFNAR2 Nonsense_Mutation p.R46* 0.23 TCGA-EP-A2KA-01 21 44488625 44488625 C A CBS Nonsense_Mutation p.E104* 0.33 TCGA-EP-A2KA-01 21 46020985 46020985 C A KRTAP10-7 Missense_Mutation p.P155H 0.30 deleterious(0.02) unknown(0) TCGA-EP-A2KA-01 22 29706428 29706428 G T GAS2L1 Splice_Site p.X212_splice 0.40 TCGA-EP-A2KA-01 22 29706429 29706429 G T GAS2L1 Missense_Mutation p.V212L 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-EP-A2KA-01 22 39530449 39530449 C T CBX7 Silent p.A185A 0.35 TCGA-EP-A2KA-01 22 50720691 50720691 C T PLXNB2 Silent p.R1013R 0.23 TCGA-EP-A2KA-01 2 102791944 102791944 A G IL1R1 Missense_Mutation p.D381G 0.20 deleterious(0) possibly_damaging(0.871) TCGA-EP-A2KA-01 2 141773444 141773444 C A LRP1B Missense_Mutation p.D671Y 0.31 probably_damaging(0.961) TCGA-EP-A2KA-01 2 170044602 170044602 T A LRP2 Missense_Mutation p.H3069L 0.24 benign(0.005) TCGA-EP-A2KA-01 2 176948256 176948256 G A EVX2 Silent p.G83G 0.18 TCGA-EP-A2KA-01 2 219127770 219127770 G T GPBAR1 Missense_Mutation p.G108V 0.16 tolerated(0.31) probably_damaging(0.925) TCGA-EP-A2KA-01 2 219222293 219222293 C T C2orf62 Missense_Mutation p.T52M 0.13 deleterious(0) probably_damaging(0.959) TCGA-EP-A2KA-01 2 226378371 226378371 C T NYAP2 Missense_Mutation p.T169I 0.25 tolerated(0.18) benign(0.002) TCGA-EP-A2KA-01 2 226447056 226447056 A G NYAP2 Missense_Mutation p.K308R 0.24 tolerated(0.55) benign(0.007) TCGA-EP-A2KA-01 2 62067708 62067708 G A FAM161A Missense_Mutation p.S144L 0.49 tolerated(0.84) benign(0.162) TCGA-EP-A2KA-01 2 62998523 62998523 A C EHBP1 Missense_Mutation p.E103A 0.18 deleterious(0) possibly_damaging(0.491) TCGA-EP-A2KA-01 2 85843340 85843340 G A USP39 Missense_Mutation p.E8K 0.15 tolerated_low_confidence(0.06) benign(0.004) TCGA-EP-A2KA-01 2 95756225 95756225 C T MRPS5 Missense_Mutation p.R325Q 0.26 tolerated(0.22) benign(0.15) TCGA-EP-A2KA-01 2 95950732 95950732 C T PROM2 Missense_Mutation p.R582W 0.32 deleterious(0) benign(0) TCGA-EP-A2KA-01 3 111604197 111604197 C T PHLDB2 Silent p.L425L 0.29 TCGA-EP-A2KA-01 3 111985087 111985089 AAG - SLC9C1 In_Frame_Del p.L292del 0.45 TCGA-EP-A2KA-01 3 112987288 112987288 C T BOC Silent p.S173S 0.22 TCGA-EP-A2KA-01 3 14548375 14548375 G A GRIP2 RNA 0.34 TCGA-EP-A2KA-01 3 150285799 150285799 G A EIF2A Silent p.K220K 0.28 TCGA-EP-A2KA-01 3 160155954 160155954 C G TRIM59 Missense_Mutation p.V340L 0.32 tolerated(0.63) benign(0.002) TCGA-EP-A2KA-01 3 170588045 170588045 G T RPL22L1 5'UTR 0.20 TCGA-EP-A2KA-01 3 172835323 172835323 T C SPATA16 Missense_Mutation p.K67E 0.16 tolerated(0.39) possibly_damaging(0.486) TCGA-EP-A2KA-01 3 41266882 41266882 A G CTNNB1 Missense_Mutation p.R185G 0.30 deleterious(0.04) possibly_damaging(0.78) TCGA-EP-A2KA-01 3 45942794 45942794 A G CCR9 Missense_Mutation p.I172V 0.26 tolerated(1) benign(0.007) TCGA-EP-A2KA-01 3 48669737 48669737 T A SLC26A6 Nonsense_Mutation p.R176* 0.42 TCGA-EP-A2KA-01 4 106155605 106155605 A T TET2 Missense_Mutation p.H169L 0.29 tolerated(0.25) benign(0.001) TCGA-EP-A2KA-01 4 152060939 152060939 C T SH3D19 Missense_Mutation p.D505N 0.24 deleterious(0.05) possibly_damaging(0.85) TCGA-EP-A2KA-01 4 3225849 3225849 G T HTT Missense_Mutation p.A2586S 0.36 benign(0.014) TCGA-EP-A2KA-01 4 69078095 69078095 G T TMPRSS11BNL Missense_Mutation p.H37N 0.28 deleterious(0.03) probably_damaging(0.991) TCGA-EP-A2KA-01 4 77230621 77230621 G T FAM47E-STBD1 Missense_Mutation p.R182I 0.26 deleterious(0.02) possibly_damaging(0.907) TCGA-EP-A2KA-01 5 137844000 137844000 G A ETF1 Silent p.D436D 0.16 TCGA-EP-A2KA-01 5 161300201 161300201 C A GABRA1 Silent p.R112R 0.31 TCGA-EP-A2KA-01 5 176722236 176722236 A C NSD1 Missense_Mutation p.S2623R 0.34 tolerated_low_confidence(0.12) benign(0.004) TCGA-EP-A2KA-01 5 180219412 180219412 C A MGAT1 Missense_Mutation p.R187L 0.30 probably_damaging(0.999) TCGA-EP-A2KA-01 5 180375931 180375931 A C BTNL8 Missense_Mutation p.K274Q 0.50 tolerated(0.43) benign(0.004) TCGA-EP-A2KA-01 6 132068028 132068028 A G ENPP3 Missense_Mutation p.K854E 0.23 deleterious(0.03) benign(0.41) TCGA-EP-A2KA-01 6 166571721 166571721 G T T 3'UTR 0.09 TCGA-EP-A2KA-01 6 32038106 32038106 G T TNXB Silent p.L1692L 0.20 TCGA-EP-A2KA-01 6 35604882 35604882 A C FKBP5 Silent p.V53V 0.35 TCGA-EP-A2KA-01 6 37321934 37321934 G A RNF8 5'UTR 0.29 TCGA-EP-A2KA-01 6 75970580 75970580 T C TMEM30A Silent p.P167P 0.36 TCGA-EP-A2KA-01 7 138554406 138554406 G A KIAA1549 Silent p.D1551D 0.16 TCGA-EP-A2KA-01 7 70880904 70880904 G A WBSCR17 Missense_Mutation p.V207I 0.26 tolerated(0.56) probably_damaging(0.989) TCGA-EP-A2KA-01 8 133153569 133153569 C T KCNQ3 Silent p.L424L 0.44 TCGA-EP-A2KA-01 8 61765595 61765595 C T CHD7 Missense_Mutation p.A2104V 0.43 probably_damaging(0.989) TCGA-EP-A2KA-01 8 69104651 69104651 G A PREX2 Missense_Mutation p.A1499T 0.27 tolerated(0.2) benign(0.014) TCGA-EP-A2KA-01 9 131038431 131038431 C T SWI5 Missense_Mutation p.R3W 0.33 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-EP-A2KA-01 9 135779080 135779080 C A TSC1 Missense_Mutation p.K722N 0.38 deleterious(0) benign(0.217) TCGA-EP-A2KA-01 9 135933383 135933383 G C GTF3C5 3'UTR 0.39 TCGA-EP-A2KA-01 9 139250846 139250846 C T GPSM1 Silent p.I555I 0.27 TCGA-EP-A2KA-01 9 140036523 140036523 C T GRIN1 Missense_Mutation p.P106L 0.18 deleterious(0.01) benign(0.41) TCGA-EP-A2KA-01 9 71144546 71144546 C G PGM5 Missense_Mutation p.R560G 0.32 deleterious(0) benign(0.211) TCGA-EP-A2KA-01 9 87339221 87339221 C T NTRK2 Missense_Mutation p.A268V 0.27 tolerated(0.06) probably_damaging(0.999) TCGA-EP-A2KA-01 9 95584516 95584516 T C RNU6-714P 3'Flank 0.18 TCGA-EP-A2KA-01 X 120181981 120181981 G A GLUD2 Missense_Mutation p.G148E 0.28 deleterious(0.01) probably_damaging(0.966) TCGA-EP-A2KA-01 X 144906050 144906050 C A SLITRK2 Missense_Mutation p.Q703K 0.24 tolerated(0.28) benign(0.416) TCGA-EP-A2KA-01 X 153032892 153032892 G T PLXNB3 Missense_Mutation p.A227S 0.15 tolerated(0.69) benign(0.004) TCGA-EP-A2KA-01 X 32490308 32490308 G T DMD Silent p.I974I 0.26 TCGA-EP-A2KA-01 X 35989740 35989740 T G CXorf22 Missense_Mutation p.L670V 0.32 deleterious(0.01) benign(0.409) TCGA-EP-A2KA-01 X 49105132 49105132 G T CCDC22 Silent p.L456L 0.22 TCGA-EP-A2KA-01 X 70282707 70282707 G A SNX12 Silent p.S86S 0.20 TCGA-EP-A2KA-01 X 71915637 71915637 C T PHKA1 Silent p.V125V 0.31 TCGA-EP-A2KB-01 10 103281409 103281409 A T BTRC Missense_Mutation p.N113I 0.34 deleterious_low_confidence(0.02) benign(0.002) TCGA-EP-A2KB-01 10 17142090 17142090 C G CUBN Missense_Mutation p.S560T 0.43 tolerated(0.12) possibly_damaging(0.789) TCGA-EP-A2KB-01 10 81315803 81315803 G A SFTPA2 3'UTR 0.23 TCGA-EP-A2KB-01 11 105781253 105781253 G T GRIA4 Silent p.V417V 0.32 TCGA-EP-A2KB-01 11 133714476 133714476 C G SPATA19 Missense_Mutation p.Q65H 0.60 tolerated(0.11) benign(0.387) TCGA-EP-A2KB-01 11 2190970 2190970 C T TH Silent p.E105E 0.56 TCGA-EP-A2KB-01 11 27523454 27523454 T C LIN7C Silent p.A17A 0.31 TCGA-EP-A2KB-01 11 34904914 34904914 C A APIP Missense_Mutation p.W200L 0.34 deleterious(0) probably_damaging(0.997) TCGA-EP-A2KB-01 11 4790219 4790219 A G OR51F1 Missense_Mutation p.L310P 0.05 tolerated(0.14) benign(0.013) TCGA-EP-A2KB-01 11 78437179 78437179 C A TENM4 Silent p.A1165A 0.37 TCGA-EP-A2KB-01 11 93803697 93803697 C T HEPHL1 Silent p.N407N 0.31 TCGA-EP-A2KB-01 12 106740125 106740125 G A TCP11L2 Missense_Mutation p.M459I 0.39 tolerated(0.12) benign(0.012) TCGA-EP-A2KB-01 12 110390999 110390999 G A GIT2 Silent p.H380H 0.41 TCGA-EP-A2KB-01 12 123055607 123055607 G C KNTC1 Missense_Mutation p.E651D 0.07 tolerated(0.06) probably_damaging(0.956) TCGA-EP-A2KB-01 12 133727625 133727625 C G CTD-2140B24.4 Silent p.T15T 0.41 TCGA-EP-A2KB-01 12 33579155 33579155 C T SYT10 Missense_Mutation p.E143K 0.37 deleterious(0.01) probably_damaging(0.989) TCGA-EP-A2KB-01 12 57910119 57910119 A C MARS Missense_Mutation p.Q852P 0.45 deleterious(0) benign(0.104) TCGA-EP-A2KB-01 12 68551870 68551870 A T IFNG Missense_Mutation p.S63R 0.33 tolerated(0.07) possibly_damaging(0.887) TCGA-EP-A2KB-01 12 7966799 7966799 A C SLC2A14 3'UTR 0.59 TCGA-EP-A2KB-01 12 86198974 86198974 G A RASSF9 Nonsense_Mutation p.R272* 0.35 TCGA-EP-A2KB-01 13 26273474 26273474 T C ATP8A2 Missense_Mutation p.I792T 0.51 deleterious(0) possibly_damaging(0.824) TCGA-EP-A2KB-01 13 84453981 84453981 G C SLITRK1 Missense_Mutation p.S554R 0.61 tolerated(0.07) benign(0.059) TCGA-EP-A2KB-01 14 65239468 65239468 C T SPTB Missense_Mutation p.A1795T 0.89 tolerated(0.12) benign(0.415) TCGA-EP-A2KB-01 15 75221502 75221502 T C COX5A Missense_Mutation p.T58A 0.35 tolerated(0.79) benign(0.01) TCGA-EP-A2KB-01 15 90610374 90610374 A G ZNF710 Missense_Mutation p.E2G 0.47 deleterious_low_confidence(0.02) benign(0.187) TCGA-EP-A2KB-01 16 72992020 72992020 C T ZFHX3 Silent p.K675K 0.09 TCGA-EP-A2KB-01 16 79245707 79245707 C T WWOX 3'UTR 0.79 TCGA-EP-A2KB-01 16 81185495 81185495 T C PKD1L2 RNA 0.80 TCGA-EP-A2KB-01 16 90023996 90023996 C A DEF8 Silent p.P161P 0.86 TCGA-EP-A2KB-01 17 14139241 14139241 A G CDRT15 Missense_Mutation p.W167R 0.23 tolerated_low_confidence(0.35) possibly_damaging(0.781) TCGA-EP-A2KB-01 17 20163561 20163561 G A SPECC1 Missense_Mutation p.R965H 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-EP-A2KB-01 17 36091619 36091619 G A HNF1B Nonsense_Mutation p.Q338* 0.40 TCGA-EP-A2KB-01 17 40762611 40762611 C G TUBG1 Intron 0.45 TCGA-EP-A2KB-01 17 56355209 56355209 G A MPO Missense_Mutation p.R395C 0.42 deleterious(0.01) benign(0.017) TCGA-EP-A2KB-01 18 5145618 5145618 G A C18orf42 Silent p.N51N 0.56 TCGA-EP-A2KB-01 19 10476357 10476357 G A TYK2 Silent p.L283L 0.47 TCGA-EP-A2KB-01 19 14765979 14765979 T A EMR3 Splice_Site p.X132_splice 0.43 TCGA-EP-A2KB-01 19 19359573 19359573 C A NCAN Nonsense_Mutation p.Y1234* 0.48 TCGA-EP-A2KB-01 19 33498926 33498926 C A RHPN2 Missense_Mutation p.A252S 0.39 tolerated(0.05) benign(0.284) TCGA-EP-A2KB-01 19 3626642 3626642 C T CACTIN Missense_Mutation p.R40Q 0.14 tolerated_low_confidence(0.11) unknown(0) TCGA-EP-A2KB-01 19 44285117 44285117 G A KCNN4 5'UTR 0.61 TCGA-EP-A2KB-01 19 44570978 44570978 A T ZNF223 Nonsense_Mutation p.K333* 0.38 TCGA-EP-A2KB-01 19 7691045 7691045 T C XAB2 Missense_Mutation p.K212E 0.43 tolerated(0.26) benign(0.022) TCGA-EP-A2KB-01 1 153906108 153906108 G A DENND4B Missense_Mutation p.L1061F 0.56 tolerated(0.05) benign(0.17) TCGA-EP-A2KB-01 1 155917728 155917728 C - ARHGEF2 3'UTR 0.19 TCGA-EP-A2KB-01 1 159846466 159846466 C T CCDC19 Missense_Mutation p.R411Q 0.20 tolerated(1) benign(0.001) TCGA-EP-A2KB-01 1 169515769 169515769 T C F5 Missense_Mutation p.Y558C 0.08 deleterious(0) probably_damaging(1) TCGA-EP-A2KB-01 1 182847265 182847265 C G DHX9 Missense_Mutation p.P770A 0.10 tolerated(0.24) benign(0.055) TCGA-EP-A2KB-01 1 207890960 207890960 C T CR1L Silent p.I522I 0.14 TCGA-EP-A2KB-01 1 2433634 2433634 C T PLCH2 Silent p.P888P 0.29 TCGA-EP-A2KB-01 1 248637025 248637025 A G OR2T3 Missense_Mutation p.Y125C 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-EP-A2KB-01 1 27106505 27106506 - T ARID1A Frame_Shift_Ins p.Q2039Hfs*60 0.42 TCGA-EP-A2KB-01 1 79404924 79404924 G T ELTD1 Nonsense_Mutation p.C115* 0.79 TCGA-EP-A2KB-01 20 18794517 18794517 G T SCP2D1 Missense_Mutation p.G20C 0.47 tolerated(0.11) benign(0.027) TCGA-EP-A2KB-01 20 29976802 29976802 C T DEFB119 3'UTR 0.41 TCGA-EP-A2KB-01 20 34067549 34067549 G T CEP250 Missense_Mutation p.Q789H 0.34 probably_damaging(0.946) TCGA-EP-A2KB-01 20 62373570 62373570 C T SLC2A4RG Silent p.L223L 0.46 TCGA-EP-A2KB-01 21 28296553 28296553 C A ADAMTS5 Missense_Mutation p.G871V 0.35 tolerated(0.28) benign(0.001) TCGA-EP-A2KB-01 21 45953608 45953608 C T TSPEAR Missense_Mutation p.V168I 0.39 tolerated(0.36) benign(0) TCGA-EP-A2KB-01 22 17072001 17072001 C A CCT8L2 Silent p.V480V 0.71 TCGA-EP-A2KB-01 22 21235375 21235375 C T SNAP29 Missense_Mutation p.A158V 0.71 tolerated(0.13) benign(0.175) TCGA-EP-A2KB-01 22 26690288 26690288 A C SEZ6L Missense_Mutation p.E289A 0.07 deleterious(0.01) probably_damaging(1) TCGA-EP-A2KB-01 22 45291935 45291935 A G PHF21B Missense_Mutation p.L287P 0.69 deleterious(0) probably_damaging(0.999) TCGA-EP-A2KB-01 22 45943008 45943008 C T FBLN1 Silent p.A455A 0.75 TCGA-EP-A2KB-01 2 101009574 101009574 T G CHST10 3'UTR 0.42 TCGA-EP-A2KB-01 2 108487607 108487607 A G RGPD4 Silent p.E1049E 0.38 TCGA-EP-A2KB-01 2 128051105 128051105 G A ERCC3 Missense_Mutation p.S73F 0.31 deleterious(0.02) benign(0.03) TCGA-EP-A2KB-01 2 1440156 1440156 G T TPO Missense_Mutation p.R161I 0.57 deleterious(0) probably_damaging(0.999) TCGA-EP-A2KB-01 2 211341073 211341073 G C LANCL1 Silent p.S16S 0.50 TCGA-EP-A2KB-01 2 232790144 232790144 C T NPPC Silent p.L124L 0.19 TCGA-EP-A2KB-01 3 121350603 121350603 T C HCLS1 3'UTR 0.74 TCGA-EP-A2KB-01 3 138725110 138725110 T C PRR23A Translation_Start_Site p.M1? 0.64 deleterious(0.04) unknown(0) TCGA-EP-A2KB-01 3 195517320 195517320 G C MUC4 Silent p.T377T 0.30 TCGA-EP-A2KB-01 3 33870347 33870347 G T PDCD6IP Missense_Mutation p.E245D 0.05 tolerated(0.36) benign(0.002) TCGA-EP-A2KB-01 3 56658883 56658883 G C FAM208A Missense_Mutation p.Q1431E 0.52 deleterious(0) possibly_damaging(0.839) TCGA-EP-A2KB-01 3 85932566 85932567 AC T CADM2 Frame_Shift_Del p.T115Ffs*29 0.23 TCGA-EP-A2KB-01 4 154524546 154524546 A G KIAA0922 Missense_Mutation p.S911G 0.85 tolerated(0.14) benign(0.007) TCGA-EP-A2KB-01 4 40434757 40434757 C G RBM47 Missense_Mutation p.D485H 0.77 deleterious_low_confidence(0.03) possibly_damaging(0.606) TCGA-EP-A2KB-01 4 91230222 91230222 T C CCSER1 Silent p.L263L 0.10 TCGA-EP-A2KB-01 5 102237061 102237061 C A PAM Missense_Mutation p.S71Y 0.36 deleterious(0) probably_damaging(0.979) TCGA-EP-A2KB-01 5 112362996 112362996 T C MCC 3'Flank 0.40 TCGA-EP-A2KB-01 5 127704892 127704892 C T FBN2 Missense_Mutation p.C744Y 0.36 deleterious(0) probably_damaging(0.992) TCGA-EP-A2KB-01 5 140579924 140579924 G T PCDHB11 Nonsense_Mutation p.E193* 0.48 TCGA-EP-A2KB-01 5 140626597 140626597 C G PCDHB15 Missense_Mutation p.A484G 0.45 deleterious_low_confidence(0) benign(0.29) TCGA-EP-A2KB-01 5 140735864 140735864 T C PCDHGA4 Missense_Mutation p.I366T 0.39 deleterious_low_confidence(0) probably_damaging(0.909) TCGA-EP-A2KB-01 5 38950476 38950476 T A RICTOR Missense_Mutation p.Q1158H 0.43 tolerated(0.08) benign(0.232) TCGA-EP-A2KB-01 5 60628300 60628300 G T ZSWIM6 Silent p.P67P 0.65 TCGA-EP-A2KB-01 5 60628301 60628301 C T ZSWIM6 Missense_Mutation p.P68S 0.60 tolerated_low_confidence(0.87) unknown(0) TCGA-EP-A2KB-01 6 15497298 15497298 C T JARID2 Silent p.I614I 0.45 TCGA-EP-A2KB-01 6 25779513 25779513 A T SLC17A4 3'UTR 0.62 TCGA-EP-A2KB-01 6 26240967 26240967 C A HIST1H4F 3'UTR 0.44 TCGA-EP-A2KB-01 6 50740456 50740456 C T TFAP2D Missense_Mutation p.T413I 0.36 tolerated(0.21) benign(0.351) TCGA-EP-A2KB-01 6 90368429 90368429 T G MDN1 Missense_Mutation p.E4974A 0.47 unknown(0) TCGA-EP-A2KB-01 6 96662506 96662506 G C FUT9 3'UTR 0.43 TCGA-EP-A2KB-01 7 102584705 102584705 A G LRRC17 Missense_Mutation p.N326S 0.38 deleterious(0) probably_damaging(1) TCGA-EP-A2KB-01 7 141414139 141414139 T C WEE2 Missense_Mutation p.F158S 0.10 deleterious(0) probably_damaging(1) TCGA-EP-A2KB-01 7 143016896 143016896 G A CLCN1 Missense_Mutation p.G77R 0.43 tolerated(0.19) benign(0.002) TCGA-EP-A2KB-01 7 150747908 150747908 C G ASIC3 Missense_Mutation p.P293A 0.21 tolerated(0.19) benign(0.117) TCGA-EP-A2KB-01 7 34101636 34101636 G T BMPER Missense_Mutation p.G352V 0.43 deleterious(0) probably_damaging(0.934) TCGA-EP-A2KB-01 7 86415661 86415661 G C GRM3 Missense_Mutation p.D185H 0.39 deleterious(0) probably_damaging(0.999) TCGA-EP-A2KB-01 8 142228278 142228278 C A SLC45A4 Missense_Mutation p.E436D 0.38 tolerated(0.08) possibly_damaging(0.498) TCGA-EP-A2KB-01 8 145637832 145637832 C A SLC39A4 3'UTR 0.13 TCGA-EP-A2KB-01 8 23702196 23702196 A T STC1 3'UTR 0.49 TCGA-EP-A2KB-01 8 39495084 39495084 T C ADAM18 Missense_Mutation p.I230T 0.45 tolerated(0.15) benign(0.026) TCGA-EP-A2KB-01 8 41503971 41503971 G A NKX6-3 Silent p.V135V 0.45 TCGA-EP-A2KB-01 8 52232416 52232416 T A PXDNL 3'UTR 0.46 TCGA-EP-A2KB-01 9 103212870 103212870 C T MSANTD3 Silent p.C150C 0.43 TCGA-EP-A2KB-01 9 104130448 104130448 A G BAAT Missense_Mutation p.L208S 0.43 deleterious(0) probably_damaging(0.998) TCGA-EP-A2KB-01 9 79119269 79119269 A - GCNT1 3'UTR 0.29 TCGA-EP-A2KB-01 9 86955574 86955574 G A SLC28A3 5'UTR 0.54 TCGA-EP-A2KB-01 X 105970375 105970375 G T RNF128 Nonsense_Mutation p.E78* 0.37 TCGA-EP-A2KB-01 X 135053250 135053250 T A MMGT1 Missense_Mutation p.L33F 0.49 deleterious(0.03) probably_damaging(0.969) TCGA-EP-A2KB-01 X 139587141 139587141 G T SOX3 Missense_Mutation p.P29T 0.27 deleterious_low_confidence(0.01) benign(0.068) TCGA-EP-A2KB-01 X 144910444 144910444 T A TMEM257 3'UTR 0.33 TCGA-EP-A2KB-01 X 18606124 18606124 G T CDKL5 Missense_Mutation p.G202V 0.53 deleterious_low_confidence(0.01) probably_damaging(0.947) TCGA-EP-A2KB-01 X 20181109 20181109 C T RPS6KA3 Missense_Mutation p.G605D 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-EP-A2KB-01 X 32715997 32715997 A T DMD Missense_Mutation p.F317Y 0.49 benign(0.064) TCGA-EP-A2KB-01 X 35971756 35971756 A G CXorf22 Missense_Mutation p.D365G 0.33 deleterious(0) probably_damaging(1) TCGA-EP-A2KB-01 X 47430811 47430811 T A ARAF Missense_Mutation p.D592E 0.49 tolerated(1) benign(0.003) TCGA-EP-A2KB-01 X 53407003 53407003 G C SMC1A 3'UTR 0.39 TCGA-EP-A2KB-01 X 69283377 69283377 C A OTUD6A 3'UTR 0.52 TCGA-EP-A2KC-01 10 105991999 105991999 C T WDR96 Silent p.A2A 0.25 TCGA-EP-A2KC-01 10 126092375 126092375 T A OAT Missense_Mutation p.R255W 0.27 deleterious(0) possibly_damaging(0.715) TCGA-EP-A2KC-01 10 27436456 27436456 G - YME1L1 Frame_Shift_Del p.R104Vfs*15 0.29 TCGA-EP-A2KC-01 10 84498384 84498384 T C NRG3 Silent p.T335T 0.33 TCGA-EP-A2KC-01 10 84745054 84745054 T C NRG3 Missense_Mutation p.V595A 0.15 tolerated(0.33) benign(0.047) TCGA-EP-A2KC-01 10 95436450 95436450 T C FRA10AC1 Splice_Site p.X263_splice 0.52 TCGA-EP-A2KC-01 10 96802834 96802834 G C CYP2C8 Missense_Mutation p.A321G 0.33 tolerated(0.06) benign(0.023) TCGA-EP-A2KC-01 11 134131672 134131672 T C ACAD8 Missense_Mutation p.V327A 0.39 tolerated(0.23) possibly_damaging(0.754) TCGA-EP-A2KC-01 11 1466531 1466531 A G BRSK2 Missense_Mutation p.K320E 0.54 tolerated(0.08) benign(0.138) TCGA-EP-A2KC-01 11 44072129 44072129 G T ACCSL Nonsense_Mutation p.E198* 0.40 TCGA-EP-A2KC-01 11 44959105 44959105 C A TP53I11 Splice_Site p.X63_splice 0.10 TCGA-EP-A2KC-01 11 59620709 59620709 C A TCN1 Nonsense_Mutation p.E403* 0.11 TCGA-EP-A2KC-01 11 62560160 62560160 T A NXF1 Missense_Mutation p.N592Y 0.28 deleterious(0) probably_damaging(0.997) TCGA-EP-A2KC-01 12 21168632 21168632 G A SLCO1B7 Translation_Start_Site p.M1? 0.30 deleterious(0) probably_damaging(0.975) TCGA-EP-A2KC-01 12 39161460 39161460 A T CPNE8 Missense_Mutation p.F184L 0.22 tolerated(0.15) possibly_damaging(0.509) TCGA-EP-A2KC-01 12 49317594 49317594 C T FKBP11 Missense_Mutation p.G120E 0.18 deleterious(0) probably_damaging(1) TCGA-EP-A2KC-01 12 65563533 65563533 C G LEMD3 Missense_Mutation p.Q53E 0.18 deleterious(0.03) possibly_damaging(0.68) TCGA-EP-A2KC-01 12 72030627 72030627 T A ZFC3H1 Intron 0.31 TCGA-EP-A2KC-01 12 72388234 72388234 A G TPH2 Silent p.E319E 0.31 TCGA-EP-A2KC-01 12 82746877 82746877 T C CCDC59 3'UTR 0.29 TCGA-EP-A2KC-01 13 99037964 99037964 G T FARP1 Missense_Mutation p.A219S 0.30 deleterious(0) probably_damaging(0.999) TCGA-EP-A2KC-01 14 106208338 106208338 C T IGHG1 Missense_Mutation p.V188I 0.41 tolerated(0.25) benign(0.027) TCGA-EP-A2KC-01 14 106303896 106303896 T A IGHD Missense_Mutation p.E389V 0.28 deleterious_low_confidence(0) benign(0.222) TCGA-EP-A2KC-01 15 48802359 48802359 A C FBN1 Missense_Mutation p.D532E 0.39 probably_damaging(0.999) TCGA-EP-A2KC-01 16 2013233 2013233 G A RPS2 Silent p.L98L 0.40 TCGA-EP-A2KC-01 16 30768227 30768227 C T PHKG2 Missense_Mutation p.R344W 0.25 deleterious(0) probably_damaging(0.935) TCGA-EP-A2KC-01 16 88943532 88943532 T C CBFA2T3 Missense_Mutation p.D605G 0.27 tolerated(0.28) benign(0.003) TCGA-EP-A2KC-01 17 18166172 18166172 C T MIEF2 Silent p.A57A 0.36 TCGA-EP-A2KC-01 17 26912926 26912926 C A SPAG5 Nonsense_Mutation p.E566* 0.23 TCGA-EP-A2KC-01 17 29632211 29632211 T C EVI2B Silent p.P139P 0.07 TCGA-EP-A2KC-01 17 45000561 45000561 G A GOSR2 Translation_Start_Site p.M1? 0.30 deleterious(0) possibly_damaging(0.827) TCGA-EP-A2KC-01 17 67522814 67522814 A G MAP2K6 Missense_Mutation p.K282R 0.16 tolerated(0.75) benign(0.002) TCGA-EP-A2KC-01 17 74465363 74465363 T A AANAT Missense_Mutation p.V136E 0.39 deleterious(0) probably_damaging(0.927) TCGA-EP-A2KC-01 17 78328357 78328357 C A RNF213 Missense_Mutation p.Q3615K 0.22 possibly_damaging(0.744) TCGA-EP-A2KC-01 18 44089715 44089715 C - LOXHD1 Frame_Shift_Del p.M711Cfs*21 0.23 TCGA-EP-A2KC-01 18 7017348 7017348 C A LAMA1 Missense_Mutation p.V913L 0.50 tolerated(0.09) benign(0.023) TCGA-EP-A2KC-01 19 38694768 38694768 G A SIPA1L3 Missense_Mutation p.E1708K 0.31 tolerated(0.33) benign(0.041) TCGA-EP-A2KC-01 19 43382065 43382065 G A PSG1 Silent p.L144L 0.21 TCGA-EP-A2KC-01 19 47280545 47280545 G A SLC1A5 Silent p.L392L 0.18 TCGA-EP-A2KC-01 19 47912456 47912456 T A MEIS3 Missense_Mutation p.D253V 0.19 deleterious(0) possibly_damaging(0.542) TCGA-EP-A2KC-01 19 47912457 47912457 C G MEIS3 Missense_Mutation p.D253H 0.18 deleterious(0) probably_damaging(0.958) TCGA-EP-A2KC-01 19 48204844 48204844 G A GLTSCR1 Silent p.E1285E 0.45 TCGA-EP-A2KC-01 19 56952618 56952618 G A ZNF667 Silent p.P582P 0.35 TCGA-EP-A2KC-01 19 830863 830863 G T AZU1 Silent p.V172V 0.31 TCGA-EP-A2KC-01 1 100623869 100623869 A T LRRC39 Missense_Mutation p.V144D 0.53 deleterious(0) possibly_damaging(0.888) TCGA-EP-A2KC-01 1 11316988 11316988 A T MTOR Splice_Site p.X168_splice 0.62 TCGA-EP-A2KC-01 1 157805798 157805798 C A CD5L Missense_Mutation p.G68V 0.61 deleterious(0) probably_damaging(0.998) TCGA-EP-A2KC-01 1 179339142 179339142 G T AXDND1 Missense_Mutation p.W101C 0.73 deleterious(0) possibly_damaging(0.893) TCGA-EP-A2KC-01 1 225586911 225586911 A G LBR 3'Flank 0.17 TCGA-EP-A2KC-01 1 45111114 45111114 A T RNF220 Nonsense_Mutation p.K467* 0.46 TCGA-EP-A2KC-01 1 62971484 62971484 C T DOCK7 Missense_Mutation p.V1463I 0.28 tolerated(0.1) benign(0.066) TCGA-EP-A2KC-01 1 78481825 78481825 A G DNAJB4 Missense_Mutation p.N303S 0.30 tolerated(0.48) benign(0.051) TCGA-EP-A2KC-01 1 82409304 82409304 G A LPHN2 Missense_Mutation p.R350Q 0.46 tolerated(0.75) benign(0.004) TCGA-EP-A2KC-01 20 1433676 1433676 C A NSFL1C Missense_Mutation p.G218V 0.08 deleterious(0) probably_damaging(0.969) TCGA-EP-A2KC-01 20 2819099 2819099 C A PCED1A Missense_Mutation p.R207L 0.45 deleterious(0.02) possibly_damaging(0.564) TCGA-EP-A2KC-01 20 31291082 31291082 T A COMMD7 3'UTR 0.50 TCGA-EP-A2KC-01 20 34542921 34542921 A G SCAND1 5'UTR 0.31 TCGA-EP-A2KC-01 20 43344036 43344036 G A WISP2 Missense_Mutation p.R2K 0.45 tolerated(0.06) benign(0.251) TCGA-EP-A2KC-01 20 45354541 45354541 G A SLC2A10 Missense_Mutation p.G289E 0.52 tolerated(0.28) benign(0.29) TCGA-EP-A2KC-01 20 61470062 61470062 G A COL9A3 Missense_Mutation p.G605S 0.05 deleterious(0) probably_damaging(1) TCGA-EP-A2KC-01 20 9546904 9546904 T A PAK7 Missense_Mutation p.Y373F 0.44 tolerated(0.57) benign(0.133) TCGA-EP-A2KC-01 22 21363434 21363434 C T AC002472.1 5'Flank 0.48 TCGA-EP-A2KC-01 22 24086004 24086004 A T ZNF70 Missense_Mutation p.S442T 0.54 tolerated(1) benign(0) TCGA-EP-A2KC-01 22 43634786 43634786 G C SCUBE1 Intron 0.37 TCGA-EP-A2KC-01 2 101192967 101192967 C T PDCL3 3'UTR 0.27 TCGA-EP-A2KC-01 2 14775882 14775882 G T FAM84A 3'UTR 0.29 TCGA-EP-A2KC-01 2 170147487 170147487 G A LRP2 Missense_Mutation p.H264Y 0.27 benign(0.003) TCGA-EP-A2KC-01 2 191301480 191301501 TGAACTCAAGCACAGCAACCCC - MFSD6 Frame_Shift_Del p.N243Sfs*6 0.48 TCGA-EP-A2KC-01 2 196729549 196729549 T C DNAH7 Missense_Mutation p.K2277R 0.10 tolerated(0.11) benign(0.016) TCGA-EP-A2KC-01 2 217280006 217280006 G C SMARCAL1 Missense_Mutation p.K193N 0.19 tolerated(0.39) benign(0.001) TCGA-EP-A2KC-01 2 220379297 220379297 G A ASIC4 Missense_Mutation p.G78S 0.07 deleterious_low_confidence(0) benign(0.005) TCGA-EP-A2KC-01 2 228883534 228883534 G A SPHKAP Missense_Mutation p.S679F 0.34 deleterious(0) probably_damaging(0.954) TCGA-EP-A2KC-01 2 230723949 230723949 T A TRIP12 Missense_Mutation p.Q147L 0.42 deleterious_low_confidence(0.01) benign(0.023) TCGA-EP-A2KC-01 2 27460320 27460320 C T CAD Silent p.A1490A 0.25 TCGA-EP-A2KC-01 2 28812636 28812636 T C PLB1 Missense_Mutation p.M672T 0.40 deleterious(0) possibly_damaging(0.781) TCGA-EP-A2KC-01 2 32724674 32724674 T A BIRC6 Silent p.T2843T 0.30 TCGA-EP-A2KC-01 2 32724675 32724675 C T BIRC6 Silent p.L2844L 0.32 TCGA-EP-A2KC-01 2 47748598 47748598 G C KCNK12 Silent p.L247L 0.33 TCGA-EP-A2KC-01 2 8934018 8934018 G A KIDINS220 Missense_Mutation p.P400S 0.50 tolerated(0.06) probably_damaging(0.999) TCGA-EP-A2KC-01 3 184290761 184290761 G T EPHB3 Missense_Mutation p.G218V 0.45 deleterious(0) benign(0.424) TCGA-EP-A2KC-01 3 187447378 187447378 T A BCL6 Missense_Mutation p.D272V 0.24 tolerated(0.21) benign(0.432) TCGA-EP-A2KC-01 3 187447392 187447392 T C BCL6 Silent p.E267E 0.24 TCGA-EP-A2KC-01 3 193174846 193174846 G T ATP13A4 Missense_Mutation p.L620M 0.35 tolerated(1) benign(0.039) TCGA-EP-A2KC-01 3 41266098 41266098 A G CTNNB1 Missense_Mutation p.D32G 0.15 deleterious(0.01) possibly_damaging(0.452) TCGA-EP-A2KC-01 3 49569129 49569129 C T DAG1 Silent p.T395T 0.15 TCGA-EP-A2KC-01 3 52179895 52179895 C T POC1A Missense_Mutation p.V216M 0.26 deleterious(0) benign(0.433) TCGA-EP-A2KC-01 3 52428551 52428551 T C DNAH1 Missense_Mutation p.L3566P 0.32 probably_damaging(0.995) TCGA-EP-A2KC-01 4 74284003 74284003 A G ALB Missense_Mutation p.K543E 0.37 tolerated(1) benign(0.001) TCGA-EP-A2KC-01 5 137426639 137426639 C T WNT8A Silent p.S311S 0.53 TCGA-EP-A2KC-01 5 140215321 140215321 C T PCDHA7 Silent p.N451N 0.49 TCGA-EP-A2KC-01 6 139202242 139202242 C T ECT2L Missense_Mutation p.A605V 0.28 deleterious(0) probably_damaging(0.999) TCGA-EP-A2KC-01 6 155776225 155776225 G T NOX3 Missense_Mutation p.D29E 0.51 tolerated(0.27) benign(0.345) TCGA-EP-A2KC-01 6 27114511 27114511 G T HIST1H2BK Missense_Mutation p.Q23K 0.48 tolerated_low_confidence(0.08) unknown(0) TCGA-EP-A2KC-01 6 30231208 30231208 A G HCG17 Intron 0.10 TCGA-EP-A2KC-01 6 31544935 31544935 G A TNF Missense_Mutation p.R108Q 0.23 tolerated(0.29) benign(0.012) TCGA-EP-A2KC-01 6 32816536 32816536 G A TAP1 Missense_Mutation p.R547C 0.22 tolerated(0.18) benign(0.003) TCGA-EP-A2KC-01 6 39159107 39159107 G T KCNK5 Silent p.P353P 0.12 TCGA-EP-A2KC-01 7 102760530 102760530 G A NAPEPLD Silent p.L145L 0.60 TCGA-EP-A2KC-01 7 105146447 105146447 T C PUS7 Silent p.E180E 0.08 TCGA-EP-A2KC-01 7 113519408 113519408 T C PPP1R3A Missense_Mutation p.D580G 0.56 tolerated(0.13) benign(0.022) TCGA-EP-A2KC-01 7 133812144 133812144 C T LRGUK Silent p.L8L 0.27 TCGA-EP-A2KC-01 7 148863347 148863347 A G ZNF398 Missense_Mutation p.K173R 0.41 tolerated(0.25) probably_damaging(0.998) TCGA-EP-A2KC-01 7 26779584 26779584 C T SKAP2 Splice_Site p.X103_splice 0.19 TCGA-EP-A2KC-01 7 65224875 65224875 A G SNORA22 3'Flank 0.53 TCGA-EP-A2KC-01 7 81588622 81588622 C T CACNA2D1 Missense_Mutation p.G1043E 0.12 deleterious(0) probably_damaging(1) TCGA-EP-A2KC-01 7 82581541 82581541 C T PCLO Missense_Mutation p.V2910I 0.64 unknown(0) TCGA-EP-A2KC-01 7 82784846 82784846 G T PCLO Missense_Mutation p.P371T 0.14 unknown(0) TCGA-EP-A2KC-01 7 88964537 88964537 C T ZNF804B Silent p.H747H 0.10 TCGA-EP-A2KC-01 7 99021404 99021404 A G ATP5J2-PTCD1 Silent p.F687F 0.37 TCGA-EP-A2KC-01 8 13959983 13959983 T C SGCZ Missense_Mutation p.I216V 0.67 tolerated(0.58) benign(0.001) TCGA-EP-A2KC-01 8 73480262 73480262 C A KCNB2 Missense_Mutation p.S98Y 0.14 tolerated(0.14) possibly_damaging(0.74) TCGA-EP-A2KC-01 8 94800156 94800156 T C TMEM67 Silent p.D499D 0.33 TCGA-EP-A2KC-01 9 116049016 116049016 C T PRPF4 Silent p.F281F 0.27 TCGA-EP-A2KC-01 X 107834316 107834316 T C COL4A5 Silent p.P398P 0.68 TCGA-EP-A2KC-01 X 109695030 109695030 T A RGAG1 Silent p.S395S 0.67 TCGA-EP-A2KC-01 X 152106689 152106689 C T ZNF185 Missense_Mutation p.A429V 0.78 tolerated(0.18) benign(0.006) TCGA-EP-A2KC-01 X 25033898 25033898 G T ARX 5'UTR 0.84 TCGA-EP-A2KC-01 X 38664209 38664209 A G MID1IP1 Missense_Mutation p.I4V 0.78 tolerated(0.2) benign(0.015) TCGA-EP-A3JL-01 10 104247919 104247919 A C ACTR1A Silent p.T101T 0.22 TCGA-EP-A3JL-01 10 111883814 111883814 C G ADD3 Missense_Mutation p.R395G 0.31 deleterious(0) probably_damaging(0.975) TCGA-EP-A3JL-01 10 127705765 127705765 A - ADAM12 3'UTR 0.12 TCGA-EP-A3JL-01 10 21074666 21074666 G A NEBL 3'UTR 0.15 TCGA-EP-A3JL-01 10 45939709 45939709 C T ALOX5 Missense_Mutation p.A607V 0.10 tolerated(0.89) possibly_damaging(0.782) TCGA-EP-A3JL-01 10 50025347 50025347 C T WDFY4 Nonsense_Mutation p.Q1800* 0.28 TCGA-EP-A3JL-01 10 7327859 7327859 G T SFMBT2 Nonsense_Mutation p.S165* 0.15 TCGA-EP-A3JL-01 10 7327860 7327860 A T SFMBT2 Missense_Mutation p.S165T 0.16 tolerated(0.09) benign(0.345) TCGA-EP-A3JL-01 11 11963990 11963990 C G USP47 Missense_Mutation p.L740V 0.20 deleterious(0) probably_damaging(0.998) TCGA-EP-A3JL-01 11 120989400 120989400 C T TECTA Silent p.I392I 0.20 TCGA-EP-A3JL-01 11 16776415 16776415 T C C11orf58 Intron 0.16 TCGA-EP-A3JL-01 11 32605410 32605410 G A EIF3M 5'UTR 0.09 TCGA-EP-A3JL-01 11 57995759 57995759 T A OR10Q1 Missense_Mutation p.I197F 0.36 deleterious(0) probably_damaging(0.932) TCGA-EP-A3JL-01 11 60543106 60543106 G A MS4A15 Missense_Mutation p.S214N 0.39 tolerated(0.49) benign(0.125) TCGA-EP-A3JL-01 11 63396664 63396664 C A ATL3 3'UTR 0.39 TCGA-EP-A3JL-01 12 112330895 112330895 A G MAPKAPK5 3'UTR 0.42 TCGA-EP-A3JL-01 12 125451669 125451669 C T DHX37 Missense_Mutation p.E502K 0.07 tolerated(0.39) benign(0.007) TCGA-EP-A3JL-01 12 133291565 133291565 C T PGAM5 Missense_Mutation p.H105Y 0.22 deleterious(0) probably_damaging(0.997) TCGA-EP-A3JL-01 12 18715634 18715634 T A PIK3C2G Intron 0.15 TCGA-EP-A3JL-01 12 74933098 74933098 A T ATXN7L3B 3'UTR 0.19 TCGA-EP-A3JL-01 12 93835640 93835640 C A UBE2N Missense_Mutation p.R7S 0.27 deleterious(0) probably_damaging(0.983) TCGA-EP-A3JL-01 13 107164993 107164993 G A EFNB2 Missense_Mutation p.P97L 0.29 tolerated(0.55) benign(0.08) TCGA-EP-A3JL-01 13 20411886 20411886 T C ZMYM5 Silent p.T316T 0.15 TCGA-EP-A3JL-01 13 33703451 33703451 G C STARD13 Missense_Mutation p.R455G 0.32 deleterious(0) probably_damaging(1) TCGA-EP-A3JL-01 13 38211433 38211433 T C TRPC4 Silent p.L852L 0.35 TCGA-EP-A3JL-01 13 39261907 39261907 C A FREM2 Silent p.G142G 0.39 TCGA-EP-A3JL-01 14 35871997 35872005 CCAAGGACA - NFKBIA In_Frame_Del p.V203_L205del 0.28 TCGA-EP-A3JL-01 15 56748716 56748716 C G MNS1 Missense_Mutation p.E77Q 0.29 tolerated(0.12) benign(0.17) TCGA-EP-A3JL-01 15 69238762 69238762 G C SPESP1 Missense_Mutation p.E297Q 0.23 deleterious(0.02) probably_damaging(0.987) TCGA-EP-A3JL-01 15 74177139 74177139 A C TBC1D21 Missense_Mutation p.I129L 0.37 tolerated(1) benign(0) TCGA-EP-A3JL-01 15 91150628 91150628 T C CRTC3 Silent p.A165A 0.12 TCGA-EP-A3JL-01 16 22162149 22162149 C A VWA3A Missense_Mutation p.S1088Y 0.23 deleterious(0) possibly_damaging(0.898) TCGA-EP-A3JL-01 16 22162150 22162150 C A VWA3A Silent p.S1088S 0.21 TCGA-EP-A3JL-01 16 230740 230740 A G HBQ1 Silent p.R57R 0.19 TCGA-EP-A3JL-01 16 70595533 70595533 G A SF3B3 Missense_Mutation p.V712I 0.17 tolerated(0.31) benign(0.02) TCGA-EP-A3JL-01 16 735892 735892 G A WDR24 Missense_Mutation p.S517L 0.33 tolerated(0.13) benign(0.131) TCGA-EP-A3JL-01 16 737415 737415 C T WDR24 Missense_Mutation p.G221S 0.16 tolerated(0.53) benign(0.102) TCGA-EP-A3JL-01 16 83816877 83816877 G T CDH13 Missense_Mutation p.S692I 0.29 tolerated(0.09) benign(0.015) TCGA-EP-A3JL-01 17 43331784 43331784 T A SPATA32 3'UTR 0.20 TCGA-EP-A3JL-01 17 65822352 65822352 A G BPTF Missense_Mutation p.D171G 0.14 unknown(0) TCGA-EP-A3JL-01 17 72539019 72539019 C A CD300C Nonsense_Mutation p.E170* 0.31 TCGA-EP-A3JL-01 17 72539020 72539020 G T CD300C Silent p.P169P 0.30 TCGA-EP-A3JL-01 17 73975154 73975154 T G ACOX1 Translation_Start_Site p.M1? 0.22 deleterious(0.05) benign(0.127) TCGA-EP-A3JL-01 17 74011082 74011082 A T EVPL Missense_Mutation p.F713I 0.10 deleterious(0.01) possibly_damaging(0.735) TCGA-EP-A3JL-01 17 80373361 80373361 C T OGFOD3 Missense_Mutation p.V73I 0.33 tolerated(0.2) benign(0.131) TCGA-EP-A3JL-01 17 8051980 8051980 T C PER1 Missense_Mutation p.I344V 0.27 tolerated(1) benign(0.006) TCGA-EP-A3JL-01 18 13645383 13645383 T C LDLRAD4 Silent p.S216S 0.27 TCGA-EP-A3JL-01 18 50918256 50918256 A G DCC Missense_Mutation p.K896R 0.40 tolerated(0.09) benign(0.323) TCGA-EP-A3JL-01 19 15740207 15740207 A G CYP4F8 RNA 0.39 TCGA-EP-A3JL-01 19 36220117 36220117 A G KMT2B Missense_Mutation p.I1613V 0.26 possibly_damaging(0.768) TCGA-EP-A3JL-01 19 38384931 38384931 C T WDR87 Missense_Mutation p.R432Q 0.24 benign(0.285) TCGA-EP-A3JL-01 19 4224480 4224480 G C ANKRD24 Missense_Mutation p.R1140T 0.30 deleterious(0) probably_damaging(0.972) TCGA-EP-A3JL-01 19 51503826 51503826 T A KLK8 Silent p.A73A 0.36 TCGA-EP-A3JL-01 19 54746124 54746124 C T LILRA6 Missense_Mutation p.V45M 0.16 tolerated(0.15) probably_damaging(0.975) TCGA-EP-A3JL-01 19 55176617 55176617 C T LILRB4 Missense_Mutation p.S248L 0.22 tolerated(0.34) possibly_damaging(0.543) TCGA-EP-A3JL-01 19 56473481 56473482 TG - NLRP8 Frame_Shift_Del p.F699Cfs*4 0.10 TCGA-EP-A3JL-01 19 8994178 8994178 C A MUC16 Missense_Mutation p.G13836V 0.23 probably_damaging(1) TCGA-EP-A3JL-01 1 109823808 109823808 C A PSRC1 Silent p.S195S 0.20 TCGA-EP-A3JL-01 1 117311336 117311336 C A CD2 Silent p.P329P 0.32 TCGA-EP-A3JL-01 1 149858529 149858529 C G HIST2H2AC Missense_Mutation p.S2C 0.45 deleterious_low_confidence(0.02) benign(0.184) TCGA-EP-A3JL-01 1 154941042 154941042 A C SHC1 Missense_Mutation p.F227V 0.43 deleterious(0.01) possibly_damaging(0.599) TCGA-EP-A3JL-01 1 158612680 158612680 T C SPTA1 Missense_Mutation p.E1510G 0.04 deleterious(0) probably_damaging(0.938) TCGA-EP-A3JL-01 1 160001525 160001525 C G PIGM Missense_Mutation p.G2A 0.15 tolerated_low_confidence(0.67) benign(0.001) TCGA-EP-A3JL-01 1 165414274 165414274 G A RXRG 5'UTR 0.12 TCGA-EP-A3JL-01 1 17256975 17256975 G T CROCC Missense_Mutation p.Q245H 0.20 probably_damaging(0.995) TCGA-EP-A3JL-01 1 186277383 186277383 A C PRG4 Silent p.P844P 0.08 TCGA-EP-A3JL-01 1 205589534 205589534 T A ELK4 Missense_Mutation p.I214F 0.12 tolerated(0.11) benign(0.019) TCGA-EP-A3JL-01 1 237802427 237802427 G A RYR2 Missense_Mutation p.M2347I 0.46 benign(0.074) TCGA-EP-A3JL-01 1 47649495 47649495 A G PDZK1IP1 3'UTR 0.29 TCGA-EP-A3JL-01 1 54640412 54640412 C T CYB5RL Silent p.L276L 0.16 TCGA-EP-A3JL-01 1 75684996 75684996 T A SLC44A5 Missense_Mutation p.K404N 0.36 tolerated(0.12) probably_damaging(0.968) TCGA-EP-A3JL-01 20 61978128 61978128 C A CHRNA4 Missense_Mutation p.G616C 0.39 deleterious(0) probably_damaging(1) TCGA-EP-A3JL-01 21 15873032 15873032 A G SAMSN1 Missense_Mutation p.C264R 0.12 tolerated(0.62) probably_damaging(0.94) TCGA-EP-A3JL-01 21 38865436 38865436 G T DYRK1A Nonsense_Mutation p.G357* 0.21 TCGA-EP-A3JL-01 22 17450871 17450871 G T GAB4 Missense_Mutation p.T300N 0.38 deleterious(0.05) benign(0.129) TCGA-EP-A3JL-01 22 35947948 35947948 G A RASD2 Missense_Mutation p.E224K 0.26 tolerated(0.91) benign(0.002) TCGA-EP-A3JL-01 2 101086943 101086943 C T NMS 5'Flank 0.32 TCGA-EP-A3JL-01 2 139428887 139428887 T C NXPH2 Missense_Mutation p.I134V 0.28 tolerated(0.15) possibly_damaging(0.557) TCGA-EP-A3JL-01 2 168726974 168726974 T C B3GALT1 3'UTR 0.14 TCGA-EP-A3JL-01 2 179753268 179753268 C A CCDC141 Missense_Mutation p.G465C 0.27 deleterious(0.01) probably_damaging(0.954) TCGA-EP-A3JL-01 2 198267752 198267752 A G SF3B1 Missense_Mutation p.V576A 0.24 deleterious(0.01) benign(0.38) TCGA-EP-A3JL-01 2 212543852 212543852 C A ERBB4 Missense_Mutation p.G516V 0.25 deleterious(0) possibly_damaging(0.892) TCGA-EP-A3JL-01 2 215646146 215646146 C T BARD1 Missense_Mutation p.S151N 0.16 deleterious(0) probably_damaging(0.91) TCGA-EP-A3JL-01 2 219619007 219619007 T C TTLL4 Silent p.S1165S 0.22 TCGA-EP-A3JL-01 2 223423159 223423159 C T SGPP2 Missense_Mutation p.L248F 0.26 tolerated(0.58) benign(0.028) TCGA-EP-A3JL-01 2 230231627 230231627 G T DNER Missense_Mutation p.S688R 0.24 deleterious(0.01) benign(0.149) TCGA-EP-A3JL-01 2 25384548 25384548 G C POMC Missense_Mutation p.P69R 0.24 deleterious(0.04) benign(0.059) TCGA-EP-A3JL-01 2 33500133 33500133 A T LTBP1 Missense_Mutation p.S949C 0.10 deleterious(0) possibly_damaging(0.838) TCGA-EP-A3JL-01 2 45616467 45616467 G A SRBD1 Silent p.D990D 0.05 TCGA-EP-A3JL-01 3 108220704 108220704 T C MYH15 Splice_Site p.X86_splice 0.23 TCGA-EP-A3JL-01 3 112548190 112548190 T C CD200R1L Missense_Mutation p.N30D 0.21 tolerated(0.44) benign(0.048) TCGA-EP-A3JL-01 3 113720527 113720527 T C KIAA1407 Missense_Mutation p.Q693R 0.28 deleterious(0.01) probably_damaging(0.917) TCGA-EP-A3JL-01 3 185270367 185270367 G C LIPH 5'UTR 0.24 TCGA-EP-A3JL-01 3 30827899 30827899 C T GADL1 Splice_Site p.X417_splice 0.29 TCGA-EP-A3JL-01 3 41274911 41274911 T A CTNNB1 Missense_Mutation p.N387K 0.21 deleterious(0) probably_damaging(0.996) TCGA-EP-A3JL-01 3 49294178 49294178 G A CCDC36 Missense_Mutation p.M416I 0.20 tolerated(0.39) benign(0.015) TCGA-EP-A3JL-01 3 69084238 69084238 C A TMF1 Missense_Mutation p.R727L 0.33 deleterious(0) probably_damaging(0.966) TCGA-EP-A3JL-01 4 110384125 110384125 T C SEC24B Missense_Mutation p.S68P 0.12 tolerated_low_confidence(0.11) benign(0.039) TCGA-EP-A3JL-01 4 126367520 126367520 G T FAT4 Missense_Mutation p.L2422F 0.24 probably_damaging(0.978) TCGA-EP-A3JL-01 4 71508497 71508497 A G ENAM Missense_Mutation p.K452E 0.26 deleterious(0.01) benign(0.281) TCGA-EP-A3JL-01 4 74274387 74274388 - A ALB Frame_Shift_Ins p.Q118Tfs*4 0.18 TCGA-EP-A3JL-01 4 90856345 90856345 C A MMRN1 Missense_Mutation p.S505Y 0.19 deleterious(0) probably_damaging(0.935) TCGA-EP-A3JL-01 4 95198291 95198291 G T SMARCAD1 Missense_Mutation p.R688I 0.21 deleterious(0.01) benign(0.185) TCGA-EP-A3JL-01 5 110835475 110835475 T C STARD4 3'UTR 0.47 TCGA-EP-A3JL-01 5 13794081 13794081 A G DNAH5 Silent p.D2658D 0.53 TCGA-EP-A3JL-01 5 153149817 153149817 G A GRIA1 Missense_Mutation p.M714I 0.52 tolerated(0.57) benign(0.042) TCGA-EP-A3JL-01 5 19483500 19483500 G A CDH18 Missense_Mutation p.R598W 0.19 deleterious(0.05) possibly_damaging(0.857) TCGA-EP-A3JL-01 5 34914840 34914840 A G RAD1 Missense_Mutation p.V53A 0.62 tolerated(0.09) possibly_damaging(0.626) TCGA-EP-A3JL-01 5 37226698 37226698 T A C5orf42 Missense_Mutation p.T667S 0.22 deleterious(0.02) probably_damaging(0.992) TCGA-EP-A3JL-01 5 71489897 71489897 G A MAP1B Missense_Mutation p.V239I 0.16 unknown(0) TCGA-EP-A3JL-01 5 89989829 89989829 C A GPR98 Missense_Mutation p.P2419H 0.29 probably_damaging(0.953) TCGA-EP-A3JL-01 6 131904974 131904974 A G ARG1 Missense_Mutation p.I307V 0.57 tolerated(1) benign(0.001) TCGA-EP-A3JL-01 7 141491097 141491097 A - TAS2R5 3'UTR 0.14 TCGA-EP-A3JL-01 7 95222151 95222151 G A PDK4 Silent p.V150V 0.25 TCGA-EP-A3JL-01 8 145641255 145641255 G A SLC39A4 Missense_Mutation p.P138L 0.06 tolerated(0.53) benign(0.003) TCGA-EP-A3JL-01 8 81412172 81412172 A G ZBTB10 Silent p.P472P 0.19 TCGA-EP-A3JL-01 9 136028790 136028790 G T GBGT1 3'UTR 0.36 TCGA-EP-A3JL-01 9 37302184 37302184 G A ZCCHC7 Splice_Site p.X204_splice 0.14 TCGA-EP-A3JL-01 9 96318785 96318785 G T FAM120A Missense_Mutation p.W799L 0.24 deleterious(0) probably_damaging(0.998) TCGA-EP-A3JL-01 9 97063227 97063227 T C ZNF169 Missense_Mutation p.C463R 0.22 deleterious(0) probably_damaging(1) TCGA-EP-A3JL-01 9 97063234 97063234 G C ZNF169 Missense_Mutation p.R465P 0.20 deleterious(0) probably_damaging(0.997) TCGA-EP-A3JL-01 Y 4968507 4968507 A G PCDH11Y Missense_Mutation p.D963G 0.46 tolerated(1) benign(0.018) TCGA-EP-A3RK-01 10 117075032 117075032 A T ATRNL1 Missense_Mutation p.Q941H 0.19 deleterious(0.02) possibly_damaging(0.784) TCGA-EP-A3RK-01 10 127569466 127569466 A G DHX32 5'UTR 0.27 TCGA-EP-A3RK-01 10 98761962 98761962 G A SLIT1 Missense_Mutation p.A1440V 0.27 tolerated(0.15) benign(0.001) TCGA-EP-A3RK-01 11 119044251 119044251 G A NLRX1 Missense_Mutation p.R98H 0.21 deleterious(0.01) benign(0.025) TCGA-EP-A3RK-01 11 47368980 47368980 T C MYBPC3 Missense_Mutation p.K301R 0.09 tolerated(0.18) probably_damaging(0.999) TCGA-EP-A3RK-01 11 62458597 62458597 C T BSCL2 Missense_Mutation p.R341K 0.20 tolerated(0.63) benign(0.005) TCGA-EP-A3RK-01 11 64522286 64522286 C T PYGM Missense_Mutation p.R293Q 0.30 deleterious(0.01) probably_damaging(0.972) TCGA-EP-A3RK-01 11 64757247 64757247 C A BATF2 Missense_Mutation p.R60L 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-EP-A3RK-01 11 70281291 70281291 C T CTTN Intron 0.15 TCGA-EP-A3RK-01 12 113834987 113834988 - T SDS Frame_Shift_Ins p.L213Pfs*32 0.17 TCGA-EP-A3RK-01 12 124835161 124835162 - C NCOR2 Frame_Shift_Ins p.K1273Qfs*9 0.18 TCGA-EP-A3RK-01 12 63195713 63195713 G A PPM1H Silent p.R213R 0.46 TCGA-EP-A3RK-01 12 8375287 8375287 T C FAM90A1 Missense_Mutation p.R176G 0.15 tolerated(0.14) possibly_damaging(0.796) TCGA-EP-A3RK-01 12 95228694 95228694 C T MIR492 3'Flank 0.28 TCGA-EP-A3RK-01 13 24798144 24798144 C T SPATA13 Silent p.D359D 0.30 TCGA-EP-A3RK-01 14 24843036 24843036 C A NFATC4 Silent p.V628V 0.21 TCGA-EP-A3RK-01 14 95080847 95080847 C T SERPINA3 Silent p.C23C 0.09 TCGA-EP-A3RK-01 15 34628887 34628887 T G SLC12A6 5'UTR 0.10 TCGA-EP-A3RK-01 15 89844660 89844660 C T FANCI Missense_Mutation p.P998L 0.28 deleterious(0) possibly_damaging(0.907) TCGA-EP-A3RK-01 16 55517934 55517934 T A MMP2 Silent p.I129I 0.26 TCGA-EP-A3RK-01 17 4098292 4098292 G A ANKFY1 Silent p.D493D 0.19 TCGA-EP-A3RK-01 17 4802334 4802334 C A CHRNE Missense_Mutation p.V430L 0.12 deleterious(0.05) benign(0.028) TCGA-EP-A3RK-01 17 4923807 4923807 A G KIF1C Missense_Mutation p.K591E 0.18 deleterious(0.05) possibly_damaging(0.636) TCGA-EP-A3RK-01 18 56247067 56247067 A G ALPK2 Missense_Mutation p.I314T 0.17 tolerated(0.06) benign(0.256) TCGA-EP-A3RK-01 19 16976267 16976267 A G SIN3B Missense_Mutation p.E509G 0.05 deleterious(0) probably_damaging(0.928) TCGA-EP-A3RK-01 19 19745495 19745495 G C GMIP Missense_Mutation p.I635M 0.09 deleterious(0.04) possibly_damaging(0.493) TCGA-EP-A3RK-01 19 38779819 38779819 T C SPINT2 Missense_Mutation p.F127L 0.08 deleterious(0.04) benign(0.067) TCGA-EP-A3RK-01 19 39406698 39406698 C T SARS2 Silent p.G444G 0.11 TCGA-EP-A3RK-01 19 46733653 46733653 A G IGFL1 Missense_Mutation p.T68A 0.08 tolerated(0.16) benign(0.007) TCGA-EP-A3RK-01 19 46890688 46890688 G A PPP5C Silent p.R371R 0.27 TCGA-EP-A3RK-01 19 53669326 53669326 A G ZNF665 Silent p.N139N 0.25 TCGA-EP-A3RK-01 19 53747007 53747007 A T ZNF677 Silent p.P53P 0.25 TCGA-EP-A3RK-01 1 100154970 100154970 C G PALMD Nonsense_Mutation p.S385* 0.24 TCGA-EP-A3RK-01 1 154917330 154917330 C T PBXIP1 3'UTR 0.26 TCGA-EP-A3RK-01 1 186880477 186880477 C T PLA2G4A Missense_Mutation p.L172F 0.18 tolerated(0.13) benign(0.033) TCGA-EP-A3RK-01 1 197094016 197094016 A G ASPM Missense_Mutation p.I1051T 0.07 deleterious(0) probably_damaging(0.988) TCGA-EP-A3RK-01 1 241798393 241798393 C T CHML Missense_Mutation p.G226S 0.14 tolerated(0.16) benign(0.423) TCGA-EP-A3RK-01 1 53974802 53974802 G A GLIS1 Missense_Mutation p.P566S 0.15 tolerated(0.19) benign(0.006) TCGA-EP-A3RK-01 20 40944364 40944364 C T PTPRT Missense_Mutation p.G713E 0.15 tolerated(0.07) benign(0.326) TCGA-EP-A3RK-01 20 47307560 47307560 C A PREX1 Missense_Mutation p.V371F 0.22 deleterious(0) probably_damaging(1) TCGA-EP-A3RK-01 22 23656199 23656199 C G BCR Missense_Mutation p.L1168V 0.29 deleterious(0.02) possibly_damaging(0.694) TCGA-EP-A3RK-01 22 37098516 37098516 A T CACNG2 Missense_Mutation p.S36T 0.19 tolerated(0.29) benign(0.286) TCGA-EP-A3RK-01 22 37524431 37524431 C T IL2RB Missense_Mutation p.R454K 0.26 tolerated(0.47) benign(0.034) TCGA-EP-A3RK-01 22 42456385 42456385 A T NAGA Missense_Mutation p.S378R 0.15 tolerated(0.22) benign(0.005) TCGA-EP-A3RK-01 2 103039738 103039738 A T IL18RAP Translation_Start_Site p.M1? 0.24 deleterious(0.01) possibly_damaging(0.46) TCGA-EP-A3RK-01 2 11738862 11738862 C G GREB1 Missense_Mutation p.Q737E 0.27 deleterious(0.02) benign(0.007) TCGA-EP-A3RK-01 2 131797718 131797718 C T ARHGEF4 Missense_Mutation p.L293F 0.21 deleterious(0.02) possibly_damaging(0.876) TCGA-EP-A3RK-01 2 131981538 131981538 C T POTEE Silent p.H244H 0.16 TCGA-EP-A3RK-01 2 197792436 197792444 GTTTTGTAC CTT PGAP1 5'Flank 0.18 TCGA-EP-A3RK-01 2 220326612 220326612 A G SPEG Missense_Mutation p.T817A 0.21 benign(0.002) TCGA-EP-A3RK-01 2 239161713 239161713 C A PER2 Missense_Mutation p.R984L 0.24 deleterious(0) probably_damaging(0.998) TCGA-EP-A3RK-01 2 23980355 23980355 A G ATAD2B Silent p.C1337C 0.24 TCGA-EP-A3RK-01 2 74185303 74185303 A G DGUOK Silent p.P246P 0.20 TCGA-EP-A3RK-01 2 98275456 98275456 A C ACTR1B Missense_Mutation p.L109R 0.18 deleterious(0) probably_damaging(1) TCGA-EP-A3RK-01 3 186269064 186269064 G T TBCCD1 Missense_Mutation p.Q517K 0.17 deleterious(0.02) possibly_damaging(0.677) TCGA-EP-A3RK-01 3 38597244 38597244 C A SCN5A Missense_Mutation p.G1482V 0.11 deleterious(0) probably_damaging(1) TCGA-EP-A3RK-01 3 41266104 41266104 G A CTNNB1 Missense_Mutation p.G34E 0.18 deleterious(0.03) probably_damaging(0.993) TCGA-EP-A3RK-01 3 9776140 9776140 C T BRPF1 Missense_Mutation p.R106C 0.11 deleterious(0.01) possibly_damaging(0.855) TCGA-EP-A3RK-01 4 156135479 156135479 C A NPY2R Missense_Mutation p.Q130K 0.13 deleterious(0) probably_damaging(0.951) TCGA-EP-A3RK-01 4 36230363 36230363 T C ARAP2 Missense_Mutation p.Q249R 0.20 tolerated(0.19) benign(0.15) TCGA-EP-A3RK-01 5 114952130 114952130 A G TMED7-TICAM2 Missense_Mutation p.C151R 0.21 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-EP-A3RK-01 5 131679562 131679562 C A SLC22A4 3'UTR 0.22 TCGA-EP-A3RK-01 5 134152221 134152221 T A DDX46 Silent p.A846A 0.19 TCGA-EP-A3RK-01 5 149324082 149324082 G A PDE6A Missense_Mutation p.P52L 0.16 tolerated(1) benign(0) TCGA-EP-A3RK-01 6 130455007 130455007 G C L3MBTL3 Missense_Mutation p.S719T 0.17 tolerated(0.97) benign(0.312) TCGA-EP-A3RK-01 6 13321159 13321159 C A TBC1D7 Missense_Mutation p.R121L 0.17 tolerated(0.33) benign(0.002) TCGA-EP-A3RK-01 6 143999268 143999268 T C PHACTR2 5'UTR 0.26 TCGA-EP-A3RK-01 6 42612241 42612241 G A UBR2 Missense_Mutation p.E751K 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-EP-A3RK-01 7 128517710 128517710 G A KCP RNA 0.28 TCGA-EP-A3RK-01 7 43906467 43906467 C T MRPS24 Missense_Mutation p.R112H 0.20 deleterious(0) probably_damaging(0.978) TCGA-EP-A3RK-01 7 44198813 44198813 C A GCK 5'UTR 0.20 TCGA-EP-A3RK-01 7 51287547 51287547 C T COBL Missense_Mutation p.G46R 0.17 tolerated(0.12) possibly_damaging(0.603) TCGA-EP-A3RK-01 7 83592651 83592651 C T SEMA3A Missense_Mutation p.G577D 0.17 tolerated(0.26) benign(0.227) TCGA-EP-A3RK-01 8 131848681 131848681 C A ADCY8 Silent p.T839T 0.44 TCGA-EP-A3RK-01 8 13259101 13259101 G A DLC1 Missense_Mutation p.R351W 0.17 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-EP-A3RK-01 8 53536345 53536345 T C RB1CC1 Silent p.V1594V 0.18 TCGA-EP-A3RK-01 8 80679323 80679323 A C HEY1 Missense_Mutation p.I57S 0.19 deleterious(0) probably_damaging(0.998) TCGA-EP-A3RK-01 9 131386761 131386761 G T SPTAN1 Missense_Mutation p.W1996L 0.28 deleterious(0) probably_damaging(1) TCGA-EP-A3RK-01 9 86571248 86571248 G A C9orf64 Silent p.N56N 0.13 TCGA-EP-A3RK-01 X 51238814 51238814 A C NUDT11 Missense_Mutation p.D161E 0.59 tolerated_low_confidence(0.23) benign(0.002) TCGA-EP-A3RK-01 X 64196327 64196327 A G ZC4H2 5'UTR 0.57 TCGA-ES-A2HS-01 10 135123793 135123793 G A ZNF511 Splice_Site p.X185_splice 0.38 TCGA-ES-A2HS-01 10 46918233 46918233 C G RP11-38L15.8 5'Flank 0.32 TCGA-ES-A2HS-01 10 75854142 75854142 C T VCL Missense_Mutation p.A489V 0.05 tolerated(0.27) possibly_damaging(0.683) TCGA-ES-A2HS-01 11 18502150 18502150 C T TSG101 Silent p.Q372Q 0.38 TCGA-ES-A2HS-01 11 18754887 18754887 G A PTPN5 Silent p.A371A 0.32 TCGA-ES-A2HS-01 11 60073590 60073590 G A MS4A4A Silent p.V188V 0.20 TCGA-ES-A2HS-01 11 60476245 60476245 C A MS4A8 Silent p.A175A 0.35 TCGA-ES-A2HS-01 11 63680389 63680389 G A RCOR2 Silent p.L308L 0.24 TCGA-ES-A2HS-01 11 64323631 64323631 C T SLC22A11 Silent p.L54L 0.38 TCGA-ES-A2HS-01 11 71510900 71510900 G T FAM86C1 3'UTR 0.27 TCGA-ES-A2HS-01 11 7670813 7670813 C G PPFIBP2 Missense_Mutation p.I683M 0.35 deleterious(0) probably_damaging(0.999) TCGA-ES-A2HS-01 11 9069079 9069079 C A SCUBE2 Missense_Mutation p.R609L 0.11 deleterious(0.01) benign(0.022) TCGA-ES-A2HS-01 11 93462654 93462654 G A KIAA1731 Missense_Mutation p.V2453I 0.33 tolerated(0.49) benign(0.023) TCGA-ES-A2HS-01 12 118472835 118472835 C G WSB2 Silent p.G336G 0.08 TCGA-ES-A2HS-01 12 33031343 33031343 C T PKP2 Silent p.E157E 0.13 TCGA-ES-A2HS-01 12 42866333 42866333 G T PRICKLE1 5'UTR 0.18 TCGA-ES-A2HS-01 12 43847742 43847742 G A ADAMTS20 Silent p.I576I 0.61 TCGA-ES-A2HS-01 12 43847776 43847776 T C ADAMTS20 Missense_Mutation p.Y565C 0.59 deleterious(0) probably_damaging(0.994) TCGA-ES-A2HS-01 12 57625269 57625269 C A SHMT2 Missense_Mutation p.F79L 0.54 deleterious(0.01) probably_damaging(0.978) TCGA-ES-A2HS-01 13 40293426 40293426 C T COG6 Silent p.L446L 0.18 TCGA-ES-A2HS-01 13 41239792 41239792 G A FOXO1 Silent p.I186I 0.38 TCGA-ES-A2HS-01 13 41303469 41303469 A C MRPS31 3'UTR 0.30 TCGA-ES-A2HS-01 13 41303505 41303505 G T MRPS31 3'UTR 0.32 TCGA-ES-A2HS-01 14 22592228 22592228 T C TRAV26-1 Missense_Mutation p.C105R 0.21 deleterious(0) probably_damaging(1) TCGA-ES-A2HS-01 14 23745570 23745570 A G HOMEZ Silent p.S289S 0.14 TCGA-ES-A2HS-01 14 77237533 77237533 G A VASH1 Silent p.Q133Q 0.27 TCGA-ES-A2HS-01 14 77746806 77746806 C A POMT2 Missense_Mutation p.G552W 0.50 deleterious(0) probably_damaging(0.997) TCGA-ES-A2HS-01 14 77746807 77746807 C A POMT2 Splice_Site p.X552_splice 0.51 TCGA-ES-A2HS-01 14 91739338 91739338 G T CCDC88C Silent p.P1906P 0.11 TCGA-ES-A2HS-01 15 57754012 57754012 T G CGNL1 Missense_Mutation p.D775E 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-ES-A2HS-01 15 58840664 58840664 G A LIPC Missense_Mutation p.S315N 0.48 tolerated(0.15) benign(0.033) TCGA-ES-A2HS-01 15 74468160 74468160 G A ISLR Missense_Mutation p.E321K 0.44 deleterious(0) possibly_damaging(0.67) TCGA-ES-A2HS-01 15 91769904 91769904 G A SV2B Silent p.E137E 0.31 TCGA-ES-A2HS-01 16 18846414 18846414 C T SMG1 Silent p.L2710L 0.57 TCGA-ES-A2HS-01 16 23707249 23707249 G A ERN2 Silent p.L574L 0.28 TCGA-ES-A2HS-01 16 364562 364563 AC - AXIN1 Frame_Shift_Del p.S334Pfs*16 0.37 TCGA-ES-A2HS-01 16 396448 396448 A T AXIN1 Missense_Mutation p.M193K 0.16 deleterious(0) possibly_damaging(0.853) TCGA-ES-A2HS-01 16 61687438 61687438 T A CDH8 3'UTR 0.43 TCGA-ES-A2HS-01 16 66651253 66651253 T A CMTM4 Missense_Mutation p.Y211F 0.34 tolerated_low_confidence(0.49) benign(0) TCGA-ES-A2HS-01 16 68953121 68953121 A T TANGO6 Missense_Mutation p.Q709L 0.19 deleterious(0) benign(0.168) TCGA-ES-A2HS-01 17 38068744 38068746 TTT - GSDMB In_Frame_Del p.K81del 0.56 TCGA-ES-A2HS-01 17 45006918 45006918 G A GOSR2 Missense_Mutation p.R21H 0.47 tolerated(0.05) benign(0.008) TCGA-ES-A2HS-01 17 48823914 48823914 G A LUC7L3 Missense_Mutation p.R330Q 0.55 deleterious_low_confidence(0.02) unknown(0) TCGA-ES-A2HS-01 17 60348756 60348756 T C TBC1D3P2 RNA 0.52 TCGA-ES-A2HS-01 17 71335078 71335078 C T SDK2 Missense_Mutation p.G2056E 0.53 deleterious(0.01) probably_damaging(0.952) TCGA-ES-A2HS-01 18 2946541 2946541 T C LPIN2 Intron 0.09 TCGA-ES-A2HS-01 18 29788190 29788190 C G MEP1B Missense_Mutation p.P292R 0.28 tolerated(0.07) possibly_damaging(0.694) TCGA-ES-A2HS-01 19 17837556 17837556 C T MAP1S Nonsense_Mutation p.R455* 0.24 TCGA-ES-A2HS-01 19 22156027 22156027 A G ZNF208 Silent p.H603H 0.52 TCGA-ES-A2HS-01 19 35173713 35173713 C G ZNF302 Missense_Mutation p.S14C 0.36 deleterious(0) possibly_damaging(0.83) TCGA-ES-A2HS-01 19 36206306 36206306 C A ZBTB32 Missense_Mutation p.P260T 0.29 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-ES-A2HS-01 19 44590982 44590982 G A ZNF284 Missense_Mutation p.G451R 0.33 deleterious(0.03) probably_damaging(0.971) TCGA-ES-A2HS-01 19 55663250 55663250 G A TNNI3 Silent p.I195I 0.05 TCGA-ES-A2HS-01 19 58982592 58982592 G T ZNF324 Nonsense_Mutation p.E245* 0.34 TCGA-ES-A2HS-01 1 109715162 109715162 C A KIAA1324 Missense_Mutation p.T223N 0.40 deleterious(0.04) possibly_damaging(0.878) TCGA-ES-A2HS-01 1 110294654 110294654 G A EPS8L3 Missense_Mutation p.P467L 0.39 deleterious(0.01) possibly_damaging(0.57) TCGA-ES-A2HS-01 1 152191383 152191383 G A HRNR Nonsense_Mutation p.R908* 0.39 TCGA-ES-A2HS-01 1 155154372 155154372 C T TRIM46 Missense_Mutation p.R545W 0.17 deleterious(0) probably_damaging(0.999) TCGA-ES-A2HS-01 1 169512354 169512354 T C F5 Splice_Site p.X659_splice 0.32 TCGA-ES-A2HS-01 1 201186487 201186487 C T IGFN1 Missense_Mutation p.A3223V 0.13 probably_damaging(0.991) TCGA-ES-A2HS-01 1 203186123 203186123 C T CHIT1 Missense_Mutation p.R432Q 0.35 tolerated(0.6) benign(0.002) TCGA-ES-A2HS-01 1 212139822 212139822 T A INTS7 Missense_Mutation p.L711F 0.43 tolerated(0.18) benign(0.204) TCGA-ES-A2HS-01 1 240370660 240370660 A G FMN2 Missense_Mutation p.K850E 0.48 unknown(0) TCGA-ES-A2HS-01 1 27226824 27226824 C A GPATCH3 Missense_Mutation p.R37L 0.08 tolerated(0.35) benign(0.006) TCGA-ES-A2HS-01 1 46782348 46782348 T - UQCRH 3'UTR 0.16 TCGA-ES-A2HS-01 1 54618517 54618517 C T CDCP2 Missense_Mutation p.G27S 0.20 deleterious(0.01) probably_damaging(0.91) TCGA-ES-A2HS-01 20 17410143 17410143 A T PCSK2 Silent p.G228G 0.37 TCGA-ES-A2HS-01 20 2290970 2290970 C T TGM3 Missense_Mutation p.R110W 0.37 tolerated(0.14) benign(0.012) TCGA-ES-A2HS-01 20 23967085 23967085 G A GGTLC1 Missense_Mutation p.T55I 0.40 deleterious(0) probably_damaging(0.971) TCGA-ES-A2HS-01 20 56228121 56228121 C A PMEPA1 Nonsense_Mutation p.E96* 0.34 TCGA-ES-A2HS-01 21 10862766 10862766 T C IGHV1OR21-1 Missense_Mutation p.V21A 0.16 deleterious(0.02) possibly_damaging(0.512) TCGA-ES-A2HS-01 22 21742770 21742770 C T RIMBP3B Silent p.A1541A 0.20 TCGA-ES-A2HS-01 22 46505777 46505777 G T FLJ27365 Missense_Mutation p.D124Y 0.39 deleterious_low_confidence(0) unknown(0) TCGA-ES-A2HS-01 22 50585539 50585539 G C MOV10L1 Intron 0.41 TCGA-ES-A2HS-01 2 128628438 128628438 C T AMMECR1L Missense_Mutation p.V195I 0.55 tolerated(0.07) probably_damaging(0.923) TCGA-ES-A2HS-01 2 27258486 27258486 G A TMEM214 Missense_Mutation p.R176Q 0.25 tolerated(0.15) benign(0.238) TCGA-ES-A2HS-01 3 141884509 141884509 C A GK5 Missense_Mutation p.W515C 0.47 deleterious(0) probably_damaging(1) TCGA-ES-A2HS-01 3 142136023 142136023 C T XRN1 Nonsense_Mutation p.W465* 0.26 TCGA-ES-A2HS-01 3 194117687 194117687 A G GP5 Missense_Mutation p.L442P 0.29 deleterious(0.03) possibly_damaging(0.804) TCGA-ES-A2HS-01 3 38080908 38080908 C T DLEC1 Silent p.R64R 0.32 TCGA-ES-A2HS-01 3 49940121 49940121 G A MST1R Missense_Mutation p.R308C 0.44 deleterious(0) probably_damaging(1) TCGA-ES-A2HS-01 3 71096149 71096149 C T FOXP1 Missense_Mutation p.G205D 0.11 deleterious(0) probably_damaging(0.931) TCGA-ES-A2HS-01 4 52890227 52890227 A G SGCB Missense_Mutation p.Y285H 0.13 deleterious(0) probably_damaging(0.981) TCGA-ES-A2HS-01 4 74275126 74275126 T CC ALB Frame_Shift_Ins p.F180Lfs*4 0.35 TCGA-ES-A2HS-01 4 74275205 74275205 G A ALB Splice_Site p.X205_splice 0.28 TCGA-ES-A2HS-01 4 96762199 96762199 C A PDHA2 Missense_Mutation p.R300S 0.53 deleterious(0) probably_damaging(0.987) TCGA-ES-A2HS-01 5 140563037 140563037 T A PCDHB16 Silent p.V301V 0.69 TCGA-ES-A2HS-01 5 5463354 5463354 A G KIAA0947 Missense_Mutation p.S1303G 0.06 tolerated(0.28) benign(0) TCGA-ES-A2HS-01 5 89971070 89971070 G A GPR98 Silent p.Q1707Q 0.77 TCGA-ES-A2HS-01 6 143755117 143755117 G A ADAT2 Missense_Mutation p.A68V 0.70 deleterious(0) probably_damaging(1) TCGA-ES-A2HS-01 6 32820940 32820940 C A TAP1 Silent p.G218G 0.30 TCGA-ES-A2HS-01 6 55223877 55223877 A C GFRAL Missense_Mutation p.Q298P 0.51 tolerated(0.4) benign(0.001) TCGA-ES-A2HS-01 7 101840082 101840082 C A CUX1 Missense_Mutation p.S475Y 0.32 tolerated(0.05) unknown(0) TCGA-ES-A2HS-01 7 31125006 31125006 A G ADCYAP1R1 Silent p.K206K 0.09 TCGA-ES-A2HS-01 8 131130888 131130888 A G ASAP1 Silent p.Y547Y 0.27 TCGA-ES-A2HS-01 8 145740718 145740718 T A RECQL4 Missense_Mutation p.Q461L 0.06 deleterious(0.01) benign(0.217) TCGA-ES-A2HS-01 8 52321594 52321594 G A PXDNL Missense_Mutation p.R864C 0.06 deleterious(0.03) possibly_damaging(0.55) TCGA-ES-A2HS-01 8 91072909 91072909 T G CALB1 Missense_Mutation p.D207A 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-ES-A2HS-01 9 2729648 2729648 T G KCNV2 Missense_Mutation p.F520C 0.09 deleterious(0) probably_damaging(0.95) TCGA-ES-A2HS-01 X 100245627 100245627 G C ARL13A 3'UTR 0.23 TCGA-ES-A2HS-01 X 2831775 2831775 A G ARSD Intron 0.09 TCGA-ES-A2HS-01 X 36156116 36156116 G C CHDC2 Missense_Mutation p.D363H 0.05 deleterious(0.03) possibly_damaging(0.889) TCGA-ES-A2HS-01 X 47041174 47041185 GCTCAAATCTGA - RBM10 In_Frame_Del p.K536_L539del 0.86 TCGA-ES-A2HT-01 10 106970970 106970970 G T SORCS3 Missense_Mutation p.K779N 0.23 deleterious(0.04) possibly_damaging(0.67) TCGA-ES-A2HT-01 10 64566633 64566633 T C ADO 3'UTR 0.23 TCGA-ES-A2HT-01 11 118037686 118037686 C T SCN2B Silent p.E188E 0.28 TCGA-ES-A2HT-01 11 197590 197590 C A ODF3 Missense_Mutation p.R47S 0.14 deleterious(0) possibly_damaging(0.461) TCGA-ES-A2HT-01 11 5685949 5685949 G C TRIM5 3'UTR 0.24 TCGA-ES-A2HT-01 11 65349836 65349836 G A EHBP1L1 Missense_Mutation p.G565R 0.19 tolerated(0.06) benign(0.139) TCGA-ES-A2HT-01 11 86521496 86521496 A G PRSS23 3'UTR 0.22 TCGA-ES-A2HT-01 11 95516268 95516268 T C FAM76B Missense_Mutation p.H175R 0.25 tolerated(0.44) benign(0.32) TCGA-ES-A2HT-01 12 122247600 122247600 C A SETD1B Missense_Mutation p.T250K 0.12 probably_damaging(0.995) TCGA-ES-A2HT-01 12 124496675 124496675 G C ZNF664 5'UTR 0.17 TCGA-ES-A2HT-01 13 20797362 20797362 G T GJB6 Silent p.T86T 0.16 TCGA-ES-A2HT-01 14 22102803 22102803 T C OR10G2 Missense_Mutation p.I66V 0.23 deleterious(0.03) benign(0.005) TCGA-ES-A2HT-01 14 94845816 94845816 G A SERPINA1 Silent p.P350P 0.11 TCGA-ES-A2HT-01 15 31221547 31221547 A G FAN1 Missense_Mutation p.R912G 0.27 deleterious(0) probably_damaging(0.938) TCGA-ES-A2HT-01 15 62352482 62352482 A C VPS13C Missense_Mutation p.I31S 0.30 deleterious(0) possibly_damaging(0.799) TCGA-ES-A2HT-01 16 29678593 29678593 C A SPN 3'UTR 0.26 TCGA-ES-A2HT-01 17 37902437 37902437 G T GRB7 Missense_Mutation p.K501N 0.25 deleterious(0) probably_damaging(0.916) TCGA-ES-A2HT-01 17 39274140 39274140 C A KRTAP4-11 Missense_Mutation p.S143I 0.22 deleterious(0.02) unknown(0) TCGA-ES-A2HT-01 17 45451912 45451912 A C EFCAB13 Missense_Mutation p.K318Q 0.26 tolerated(1) benign(0.001) TCGA-ES-A2HT-01 17 45451924 45451924 A C EFCAB13 Missense_Mutation p.K322Q 0.25 deleterious(0.01) probably_damaging(0.954) TCGA-ES-A2HT-01 17 45894019 45894019 G T OSBPL7 Missense_Mutation p.L280M 0.23 tolerated(0.12) benign(0.069) TCGA-ES-A2HT-01 17 63014414 63014414 G T GNA13 Missense_Mutation p.S173Y 0.07 deleterious(0) probably_damaging(0.97) TCGA-ES-A2HT-01 17 65942113 65942113 C T BPTF Missense_Mutation p.P2430L 0.20 probably_damaging(0.996) TCGA-ES-A2HT-01 17 74014678 74014678 G T EVPL Missense_Mutation p.Q430K 0.30 tolerated(0.1) probably_damaging(0.97) TCGA-ES-A2HT-01 17 74898718 74898718 G T MGAT5B Missense_Mutation p.Q148H 0.16 tolerated(0.05) benign(0.105) TCGA-ES-A2HT-01 17 76799931 76799931 C A USP36 Silent p.T782T 0.29 TCGA-ES-A2HT-01 18 10550276 10550276 A G NAPG 3'UTR 0.15 TCGA-ES-A2HT-01 18 29488317 29488317 C A TRAPPC8 Missense_Mutation p.S396I 0.21 deleterious(0.01) possibly_damaging(0.808) TCGA-ES-A2HT-01 18 43528527 43528527 T C EPG5 Missense_Mutation p.N505D 0.22 tolerated(0.06) benign(0.051) TCGA-ES-A2HT-01 18 56892742 56892742 A G GRP Missense_Mutation p.K53R 0.05 deleterious(0) probably_damaging(1) TCGA-ES-A2HT-01 19 11352157 11352157 C T C19orf80 Missense_Mutation p.L166F 0.27 deleterious(0) probably_damaging(0.956) TCGA-ES-A2HT-01 19 36222960 36222960 T C KMT2B Silent p.A1863A 0.08 TCGA-ES-A2HT-01 19 38782590 38782590 G A SPINT2 Missense_Mutation p.V235I 0.29 tolerated(0.32) benign(0.012) TCGA-ES-A2HT-01 19 44222899 44222899 G A IRGC Silent p.S63S 0.37 TCGA-ES-A2HT-01 19 44739253 44739253 A C ZNF227 Missense_Mutation p.K224Q 0.28 tolerated(0.06) benign(0.005) TCGA-ES-A2HT-01 19 4694666 4694666 T G DPP9 Intron 0.25 TCGA-ES-A2HT-01 19 50921165 50921165 C T POLD1 Silent p.L1095L 0.30 TCGA-ES-A2HT-01 19 55179481 55179481 A G LILRB4 3'UTR 0.07 TCGA-ES-A2HT-01 19 56565058 56565058 C A NLRP5 Silent p.I1061I 0.25 TCGA-ES-A2HT-01 19 890977 890977 C T MED16 Missense_Mutation p.R52H 0.21 deleterious(0.02) possibly_damaging(0.522) TCGA-ES-A2HT-01 1 11009710 11009710 G A C1orf127 Silent p.L421L 0.21 TCGA-ES-A2HT-01 1 117156433 117156433 C A IGSF3 Missense_Mutation p.M262I 0.25 tolerated(0.24) benign(0.002) TCGA-ES-A2HT-01 1 152192435 152192435 C G HRNR Missense_Mutation p.S557T 0.09 unknown(0) TCGA-ES-A2HT-01 1 157497528 157497528 G A FCRL5 Silent p.P613P 0.64 TCGA-ES-A2HT-01 1 196715034 196715034 C A CFH Nonsense_Mutation p.S1133* 0.14 TCGA-ES-A2HT-01 1 2288951 2288951 T C MORN1 Missense_Mutation p.D319G 0.20 deleterious(0.02) benign(0.092) TCGA-ES-A2HT-01 1 235506314 235506314 A G GGPS1 3'UTR 0.49 TCGA-ES-A2HT-01 1 237666628 237666628 A T RYR2 Missense_Mutation p.K812N 0.16 possibly_damaging(0.852) TCGA-ES-A2HT-01 1 27094372 27094372 A G ARID1A Missense_Mutation p.Y1027C 0.27 unknown(0) TCGA-ES-A2HT-01 1 75602350 75602350 C T LHX8 Silent p.R27R 0.23 TCGA-ES-A2HT-01 1 85431253 85431253 C G MCOLN2 Missense_Mutation p.K72N 0.17 deleterious(0) probably_damaging(0.992) TCGA-ES-A2HT-01 1 94342288 94342288 T C DNTTIP2 Silent p.E401E 0.25 TCGA-ES-A2HT-01 20 18407716 18407716 G A DZANK1 Nonsense_Mutation p.Q317* 0.22 TCGA-ES-A2HT-01 20 1876147 1876147 G T SIRPA Silent p.L18L 0.11 TCGA-ES-A2HT-01 20 23402050 23402050 G A NAPB 5'UTR 0.11 TCGA-ES-A2HT-01 20 2593953 2593953 C G TMC2 Missense_Mutation p.D619E 0.21 deleterious(0.01) probably_damaging(1) TCGA-ES-A2HT-01 20 44168108 44168108 A T WFDC6 5'UTR 0.36 TCGA-ES-A2HT-01 22 30517682 30517682 G T HORMAD2 Missense_Mutation p.V158F 0.26 deleterious(0.01) possibly_damaging(0.493) TCGA-ES-A2HT-01 2 102791973 102791973 T C IL1R1 Missense_Mutation p.Y391H 0.31 deleterious(0) probably_damaging(0.992) TCGA-ES-A2HT-01 2 110926056 110926056 T C NPHP1 Silent p.E199E 0.25 TCGA-ES-A2HT-01 2 160242972 160242972 A C BAZ2B Silent p.L1121L 0.20 TCGA-ES-A2HT-01 2 170136002 170136002 T C LRP2 Missense_Mutation p.Y482C 0.30 probably_damaging(0.967) TCGA-ES-A2HT-01 2 175269041 175269041 A C SCRN3 Missense_Mutation p.K251T 0.26 tolerated(0.59) benign(0.005) TCGA-ES-A2HT-01 2 179396537 179396537 A G TTN Silent p.P34935P 0.30 TCGA-ES-A2HT-01 2 179458397 179458397 G T TTN Missense_Mutation p.L19544I 0.30 TCGA-ES-A2HT-01 2 219674345 219674345 G A CYP27A1 Missense_Mutation p.G101R 0.29 deleterious(0.02) probably_damaging(0.965) TCGA-ES-A2HT-01 2 242695207 242695207 T C D2HGDH Intron 0.19 TCGA-ES-A2HT-01 2 39042772 39042772 A T DHX57 Missense_Mutation p.F1166Y 0.14 tolerated(0.11) probably_damaging(0.928) TCGA-ES-A2HT-01 2 54101524 54101524 T C PSME4 Silent p.K1684K 0.28 TCGA-ES-A2HT-01 2 61390252 61390252 G A C2orf74 Missense_Mutation p.S99N 0.33 tolerated(0.42) possibly_damaging(0.682) TCGA-ES-A2HT-01 2 74761507 74761507 A G LOXL3 Silent p.N625N 0.22 TCGA-ES-A2HT-01 2 96809608 96809608 A C DUSP2 Missense_Mutation p.F300C 0.26 deleterious(0) probably_damaging(1) TCGA-ES-A2HT-01 3 170732421 170732421 T G SLC2A2 Missense_Mutation p.I70L 0.28 tolerated(0.83) benign(0.004) TCGA-ES-A2HT-01 3 185970912 185970912 C T DGKG Missense_Mutation p.D524N 0.10 deleterious(0) probably_damaging(1) TCGA-ES-A2HT-01 4 156631936 156631936 C T GUCY1A3 Missense_Mutation p.P207S 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-ES-A2HT-01 4 30725244 30725244 G T PCDH7 Missense_Mutation p.D734Y 0.27 deleterious(0) probably_damaging(1) TCGA-ES-A2HT-01 4 39435941 39435941 A T KLB Missense_Mutation p.T313S 0.26 tolerated(0.79) benign(0.008) TCGA-ES-A2HT-01 4 70504997 70504997 C T UGT2A2 Missense_Mutation p.G121E 0.04 tolerated(0.8) benign(0.098) TCGA-ES-A2HT-01 4 99300176 99300176 A G RAP1GDS1 Missense_Mutation p.R125G 0.26 deleterious(0.02) possibly_damaging(0.628) TCGA-ES-A2HT-01 5 139505673 139505673 T G IGIP 5'UTR 0.16 TCGA-ES-A2HT-01 5 150946265 150946265 T A FAT2 Missense_Mutation p.D743V 0.07 probably_damaging(1) TCGA-ES-A2HT-01 5 161292754 161292754 T A GABRA1 Missense_Mutation p.I72N 0.05 deleterious(0) benign(0.42) TCGA-ES-A2HT-01 5 169508908 169508908 A G DOCK2 Missense_Mutation p.S1784G 0.30 deleterious_low_confidence(0.02) benign(0.05) TCGA-ES-A2HT-01 5 179298474 179298474 G A TBC1D9B Silent p.Y824Y 0.13 TCGA-ES-A2HT-01 5 180662368 180662368 A G TRIM41 3'UTR 0.21 TCGA-ES-A2HT-01 5 251503 251503 A T SDHA Missense_Mutation p.M572L 0.22 tolerated_low_confidence(1) benign(0.006) TCGA-ES-A2HT-01 6 121401901 121401901 C A TBC1D32 3'Flank 0.22 TCGA-ES-A2HT-01 6 136597059 136597059 A T BCLAF1 Missense_Mutation p.I535N 0.03 tolerated(0.12) possibly_damaging(0.506) TCGA-ES-A2HT-01 6 139564133 139564133 T A TXLNB Missense_Mutation p.S529C 0.27 tolerated_low_confidence(0.07) benign(0.018) TCGA-ES-A2HT-01 6 170657249 170657249 T A FAM120B Silent p.P676P 0.34 TCGA-ES-A2HT-01 6 26413697 26413697 A C BTN3A1 Missense_Mutation p.K440T 0.24 tolerated(0.14) benign(0.076) TCGA-ES-A2HT-01 6 36297976 36297976 G T C6orf222 Missense_Mutation p.H164Q 0.10 tolerated(0.27) possibly_damaging(0.86) TCGA-ES-A2HT-01 6 46657993 46657993 G A TDRD6 Missense_Mutation p.A710T 0.30 tolerated(0.46) benign(0.006) TCGA-ES-A2HT-01 6 87955340 87955340 T C ZNF292 Missense_Mutation p.L333P 0.23 deleterious(0) probably_damaging(0.997) TCGA-ES-A2HT-01 7 129761948 129761948 A G KLHDC10 Missense_Mutation p.I229V 0.34 tolerated(0.43) benign(0.006) TCGA-ES-A2HT-01 7 150070853 150070853 G A REPIN1 3'Flank 0.25 TCGA-ES-A2HT-01 7 18687567 18687567 C T HDAC9 Silent p.L399L 0.28 TCGA-ES-A2HT-01 7 96810376 96810376 C A ACN9 Missense_Mutation p.T76N 0.34 tolerated(0.28) benign(0.023) TCGA-ES-A2HT-01 8 131861906 131861906 C T ADCY8 Missense_Mutation p.R785Q 0.03 deleterious(0) benign(0) TCGA-ES-A2HT-01 8 21986470 21986470 T G HR Missense_Mutation p.M72L 0.33 tolerated_low_confidence(0.05) benign(0.001) TCGA-ES-A2HT-01 8 8560187 8560187 G T CLDN23 Silent p.L93L 0.33 TCGA-ES-A2HT-01 9 105767561 105767561 T C CYLC2 Silent p.D216D 0.26 TCGA-ES-A2HT-01 9 119858432 119858432 T A ASTN2 Splice_Site p.X339_splice 0.28 TCGA-ES-A2HT-01 9 4118024 4118024 G A GLIS3 Missense_Mutation p.A485V 0.11 tolerated(0.26) benign(0.116) TCGA-ES-A2HT-01 X 117053530 117053536 TGTAGGA - KLHL13 Frame_Shift_Del p.F176* 0.57 TCGA-ES-A2HT-01 X 133700150 133700150 G A PLAC1 Missense_Mutation p.P188L 0.68 tolerated(0.31) benign(0.006) TCGA-ES-A2HT-01 X 72900881 72900881 T C CHIC1 3'UTR 0.68 TCGA-FV-A23B-01 10 113928263 113928263 C A GPAM Missense_Mutation p.R305L 0.21 deleterious(0.02) possibly_damaging(0.81) TCGA-FV-A23B-01 10 116032564 116032564 G A VWA2 Missense_Mutation p.R146K 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-FV-A23B-01 10 123846141 123846141 A G TACC2 Missense_Mutation p.R1376G 0.10 benign(0.015) TCGA-FV-A23B-01 10 1284338 1284338 A C ADARB2 Missense_Mutation p.V406G 0.31 deleterious(0) probably_damaging(1) TCGA-FV-A23B-01 10 54531396 54531396 G A MBL2 5'UTR 0.10 TCGA-FV-A23B-01 10 5791794 5791794 A T FAM208B Missense_Mutation p.D2137V 0.50 tolerated(0.9) benign(0.001) TCGA-FV-A23B-01 10 73491946 73491946 G A CDH23 Silent p.E1311E 0.41 TCGA-FV-A23B-01 11 118037718 118037718 T C SCN2B Missense_Mutation p.M178V 0.35 tolerated(1) benign(0) TCGA-FV-A23B-01 11 121008141 121008141 C A TECTA Missense_Mutation p.P985T 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-FV-A23B-01 11 121500285 121500285 C A SORL1 3'UTR 0.09 TCGA-FV-A23B-01 11 126432754 126432754 C T KIRREL3 Missense_Mutation p.D37N 0.12 tolerated_low_confidence(0.15) benign(0.009) TCGA-FV-A23B-01 11 17418528 17418528 G A ABCC8 Missense_Mutation p.R1352C 0.32 deleterious(0) probably_damaging(0.979) TCGA-FV-A23B-01 11 19172329 19172329 A G ZDHHC13 Missense_Mutation p.K192R 0.34 tolerated(0.51) benign(0.008) TCGA-FV-A23B-01 11 44089461 44089461 C A ACCS Missense_Mutation p.P95H 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-FV-A23B-01 11 46897041 46897041 C T LRP4 Missense_Mutation p.M1297I 0.16 deleterious(0) benign(0.044) TCGA-FV-A23B-01 11 56057883 56057883 G T OR8H1 Missense_Mutation p.S219Y 0.40 tolerated(1) benign(0.028) TCGA-FV-A23B-01 11 66034872 66034872 C T KLC2 3'UTR 0.10 TCGA-FV-A23B-01 11 66618382 66618382 G A PC Silent p.L746L 0.47 TCGA-FV-A23B-01 11 70260723 70260723 G A CTTN Missense_Mutation p.G123S 0.36 deleterious(0.02) probably_damaging(1) TCGA-FV-A23B-01 12 104118857 104118857 C T STAB2 Silent p.R1596R 0.52 TCGA-FV-A23B-01 12 105151622 105151622 A G CHST11 3'UTR 0.17 TCGA-FV-A23B-01 12 63083509 63083509 G A PPM1H Silent p.Y405Y 0.37 TCGA-FV-A23B-01 12 6560517 6560517 C A CD27 Missense_Mutation p.Q248K 0.10 deleterious(0) probably_damaging(0.998) TCGA-FV-A23B-01 12 67663489 67663489 G A CAND1 5'UTR 0.63 TCGA-FV-A23B-01 13 38248410 38248410 G A TRPC4 Silent p.S443S 0.38 TCGA-FV-A23B-01 14 105611364 105611364 C T JAG2 Missense_Mutation p.R996H 0.41 deleterious(0) probably_damaging(0.998) TCGA-FV-A23B-01 14 105614150 105614150 C T JAG2 Missense_Mutation p.C775Y 0.10 deleterious(0) probably_damaging(0.939) TCGA-FV-A23B-01 14 105639440 105639440 G T NUDT14 Missense_Mutation p.P196Q 0.08 tolerated(0.18) probably_damaging(0.911) TCGA-FV-A23B-01 14 106452864 106452864 A G IGHV1-2 Missense_Mutation p.M53T 0.37 deleterious(0.01) benign(0.009) TCGA-FV-A23B-01 14 62550927 62550927 C T SYT16 Missense_Mutation p.P483L 0.44 tolerated(0.15) benign(0.002) TCGA-FV-A23B-01 14 74535597 74535597 C T ALDH6A1 Missense_Mutation p.G273E 0.35 deleterious(0) probably_damaging(0.909) TCGA-FV-A23B-01 14 86089513 86089513 T C FLRT2 Missense_Mutation p.I552T 0.32 tolerated(0.25) benign(0.018) TCGA-FV-A23B-01 15 45848235 45848235 T A RP11-96O20.2 5'Flank 0.29 TCGA-FV-A23B-01 15 62361514 62361514 G A C2CD4A 3'UTR 0.40 TCGA-FV-A23B-01 15 75498804 75498804 T C C15orf39 Missense_Mutation p.C139R 0.40 deleterious(0) possibly_damaging(0.588) TCGA-FV-A23B-01 15 80253380 80253380 G A BCL2A1 3'UTR 0.37 TCGA-FV-A23B-01 15 88727470 88727470 G T NTRK3 Silent p.T103T 0.09 TCGA-FV-A23B-01 16 23366664 23366664 T C SCNN1B Silent p.S210S 0.78 TCGA-FV-A23B-01 16 25139863 25139863 A G LCMT1 Missense_Mutation p.R61G 0.15 deleterious(0) probably_damaging(0.981) TCGA-FV-A23B-01 16 30012145 30012145 C A INO80E Missense_Mutation p.P91Q 0.17 tolerated(0.37) possibly_damaging(0.757) TCGA-FV-A23B-01 16 339439 339439 C T AXIN1 Splice_Site p.X821_splice 0.60 TCGA-FV-A23B-01 16 3900530 3900530 A G CREBBP Missense_Mutation p.L189P 0.13 probably_damaging(0.998) TCGA-FV-A23B-01 16 55893533 55893533 A G CES5A Missense_Mutation p.S357P 0.10 deleterious(0.01) possibly_damaging(0.828) TCGA-FV-A23B-01 17 10353951 10353951 C - MYH4 Frame_Shift_Del p.A1334Pfs*64 0.42 TCGA-FV-A23B-01 17 10404676 10404676 G T MYH1 Silent p.A1163A 0.64 TCGA-FV-A23B-01 17 30806343 30806343 C T PSMD11 Silent p.N329N 0.18 TCGA-FV-A23B-01 17 3514107 3514107 A T SHPK Missense_Mutation p.L395Q 0.16 deleterious(0) probably_damaging(0.996) TCGA-FV-A23B-01 17 41228578 41228578 C G BRCA1 Missense_Mutation p.G1492R 0.40 tolerated(0.14) benign(0.161) TCGA-FV-A23B-01 17 54912182 54912182 C T DGKE Missense_Mutation p.P9L 0.43 tolerated_low_confidence(0.31) benign(0.001) TCGA-FV-A23B-01 17 56573314 56573314 C T MTMR4 Missense_Mutation p.G730E 0.38 tolerated_low_confidence(0.27) benign(0.001) TCGA-FV-A23B-01 17 62523368 62523368 A G CEP95 Missense_Mutation p.K431R 0.08 tolerated(0.83) benign(0.078) TCGA-FV-A23B-01 17 67084357 67084357 T A ABCA6 Missense_Mutation p.M1217L 0.23 tolerated(1) benign(0.001) TCGA-FV-A23B-01 17 74015070 74015070 G T EVPL Silent p.A403A 0.17 TCGA-FV-A23B-01 18 7050908 7050908 T A LAMA1 Nonsense_Mutation p.K125* 0.08 TCGA-FV-A23B-01 19 11577475 11577475 G A ELAVL3 Silent p.F59F 0.55 TCGA-FV-A23B-01 19 13410090 13410090 A T CACNA1A Nonsense_Mutation p.L786* 0.46 TCGA-FV-A23B-01 19 15758035 15758046 AAAGTGGAGCCG - CYP4F3 In_Frame_Del p.E142_R146delinsD 0.37 TCGA-FV-A23B-01 19 18707746 18707746 T A CRLF1 Nonsense_Mutation p.K271* 0.29 TCGA-FV-A23B-01 19 22941187 22941187 A G ZNF99 Silent p.P508P 0.12 TCGA-FV-A23B-01 19 39591841 39591841 A G PAPL Missense_Mutation p.K323E 0.42 tolerated(0.42) benign(0.032) TCGA-FV-A23B-01 19 47422780 47422780 G A ARHGAP35 Missense_Mutation p.R283H 0.41 tolerated(0.35) benign(0.032) TCGA-FV-A23B-01 19 51379981 51379981 G A KLK2 Missense_Mutation p.A154T 0.24 tolerated(0.21) benign(0.364) TCGA-FV-A23B-01 19 58004285 58004285 C T ZNF419 Silent p.L121L 0.33 TCGA-FV-A23B-01 19 58132394 58132399 CTTGTT - ZNF134 In_Frame_Del p.L303_V304del 0.16 TCGA-FV-A23B-01 19 58453498 58453498 A G ZNF256 Silent p.R226R 0.29 TCGA-FV-A23B-01 19 9057886 9057886 C G MUC16 Missense_Mutation p.V9854L 0.44 unknown(0) TCGA-FV-A23B-01 1 107599362 107599362 C T PRMT6 Missense_Mutation p.L9F 0.40 tolerated_low_confidence(0.14) possibly_damaging(0.86) TCGA-FV-A23B-01 1 109242492 109242492 T C PRPF38B Silent p.S497S 0.37 TCGA-FV-A23B-01 1 111494007 111494007 T C LRIF1 Missense_Mutation p.K500R 0.34 tolerated(0.08) possibly_damaging(0.801) TCGA-FV-A23B-01 1 115215728 115215729 - T AMPD1 3'UTR 0.34 TCGA-FV-A23B-01 1 12379555 12379555 T C VPS13D Silent p.G2472G 0.11 TCGA-FV-A23B-01 1 151131649 151131649 T C TNFAIP8L2 Missense_Mutation p.L159P 0.11 deleterious(0) probably_damaging(1) TCGA-FV-A23B-01 1 154042865 154042865 A G NUP210L Missense_Mutation p.F813S 0.32 deleterious(0) probably_damaging(0.955) TCGA-FV-A23B-01 1 156106182 156106182 G T LMNA Silent p.V445V 0.49 TCGA-FV-A23B-01 1 156106183 156106183 G A LMNA Missense_Mutation p.D446N 0.48 deleterious(0.02) probably_damaging(0.911) TCGA-FV-A23B-01 1 163325198 163325198 A G NUF2 Missense_Mutation p.Y445C 0.23 tolerated(0.24) benign(0.001) TCGA-FV-A23B-01 1 167802265 167802267 GAA - ADCY10 In_Frame_Del p.F1184_H1185delinsY 0.24 TCGA-FV-A23B-01 1 203317394 203317394 T C FMOD Missense_Mutation p.Q2R 0.47 tolerated_low_confidence(0.85) benign(0.003) TCGA-FV-A23B-01 1 211751520 211751520 G C SLC30A1 Silent p.G145G 0.44 TCGA-FV-A23B-01 1 22838470 22838470 T A ZBTB40 Nonsense_Mutation p.C768* 0.09 TCGA-FV-A23B-01 1 27101342 27101342 G T ARID1A Nonsense_Mutation p.E1542* 0.69 TCGA-FV-A23B-01 1 39463936 39463936 C T AKIRIN1 Missense_Mutation p.S105L 0.62 tolerated(0.16) benign(0.021) TCGA-FV-A23B-01 20 36874514 36874514 G A KIAA1755 Silent p.L6L 0.31 TCGA-FV-A23B-01 20 5579378 5579378 C T GPCPD1 Missense_Mutation p.G47S 0.36 tolerated(0.32) benign(0.001) TCGA-FV-A23B-01 21 34444026 34444026 G A OLIG1 3'UTR 0.62 TCGA-FV-A23B-01 22 16287313 16287313 T C POTEH Silent p.R191R 0.18 TCGA-FV-A23B-01 22 19168279 19168279 T A CLTCL1 Missense_Mutation p.E1623V 0.42 deleterious(0.01) benign(0.29) TCGA-FV-A23B-01 22 38040647 38040647 G T SH3BP1 Nonsense_Mutation p.E208* 0.08 TCGA-FV-A23B-01 2 101014572 101014572 G A CHST10 Silent p.L75L 0.56 TCGA-FV-A23B-01 2 102988510 102988510 A C IL18R1 Missense_Mutation p.K134Q 0.39 deleterious(0.02) possibly_damaging(0.879) TCGA-FV-A23B-01 2 175618126 175618126 G A CHRNA1 Intron 0.39 TCGA-FV-A23B-01 2 185800964 185800964 C T ZNF804A Missense_Mutation p.P281S 0.36 tolerated(0.78) probably_damaging(0.994) TCGA-FV-A23B-01 2 198950752 198950752 G A PLCL1 Silent p.E837E 0.43 TCGA-FV-A23B-01 2 220422130 220422130 C T OBSL1 Missense_Mutation p.G1334E 0.50 tolerated(0.85) possibly_damaging(0.71) TCGA-FV-A23B-01 2 28626982 28626982 G T FOSL2 Silent p.R37R 0.10 TCGA-FV-A23B-01 2 54014501 54014501 T C ERLEC1 Missense_Mutation p.F52L 0.12 tolerated(0.78) benign(0.002) TCGA-FV-A23B-01 2 61238007 61238007 T A PUS10 Intron 0.11 TCGA-FV-A23B-01 3 100295791 100295791 A G TMEM45A Missense_Mutation p.R253G 0.10 deleterious(0) benign(0.357) TCGA-FV-A23B-01 3 112989647 112989647 G T BOC Splice_Site p.X175_splice 0.09 TCGA-FV-A23B-01 3 120876465 120876465 A G STXBP5L Missense_Mutation p.I290V 0.23 tolerated(0.5) benign(0.002) TCGA-FV-A23B-01 3 126737176 126737176 C T PLXNA1 Nonsense_Mutation p.Q1234* 0.11 TCGA-FV-A23B-01 3 130282231 130282231 G T COL6A6 Missense_Mutation p.K128N 0.46 tolerated(0.09) possibly_damaging(0.538) TCGA-FV-A23B-01 3 130427320 130427320 T A PIK3R4 Missense_Mutation p.E783V 0.39 tolerated(0.84) benign(0.013) TCGA-FV-A23B-01 3 141464232 141464232 G A RNF7 3'UTR 0.37 TCGA-FV-A23B-01 3 186256433 186256433 C T CRYGS 3'UTR 0.53 TCGA-FV-A23B-01 3 24003754 24003754 T C NR1D2 Silent p.N268N 0.08 TCGA-FV-A23B-01 3 48680181 48680181 C T CELSR3 Missense_Mutation p.R2848H 0.46 tolerated(0.18) benign(0.003) TCGA-FV-A23B-01 3 58179116 58179116 T C DNASE1L3 Missense_Mutation p.N252S 0.09 tolerated(0.12) benign(0.002) TCGA-FV-A23B-01 4 118975959 118975959 A G NDST3 Silent p.T298T 0.35 TCGA-FV-A23B-01 4 46252287 46252287 A T GABRA2 3'UTR 0.67 TCGA-FV-A23B-01 4 56744128 56744128 A G EXOC1 Missense_Mutation p.T374A 0.32 tolerated(0.27) benign(0.014) TCGA-FV-A23B-01 4 68396566 68396566 C A CENPC Missense_Mutation p.V100F 0.26 tolerated(0.16) benign(0.001) TCGA-FV-A23B-01 4 74719566 74719566 G A PF4V1 Missense_Mutation p.R56K 0.42 tolerated(1) benign(0.097) TCGA-FV-A23B-01 4 76551045 76551045 A G CDKL2 Missense_Mutation p.M43T 0.39 tolerated(0.52) benign(0.001) TCGA-FV-A23B-01 4 85663040 85663040 T C WDFY3 Silent p.G2036G 0.39 TCGA-FV-A23B-01 5 138643894 138643894 T C MATR3 Missense_Mutation p.S264P 0.45 tolerated(0.17) probably_damaging(0.939) TCGA-FV-A23B-01 5 139903797 139903798 - G ANKHD1 Frame_Shift_Ins p.E1489Gfs*3 0.32 TCGA-FV-A23B-01 5 1466955 1466955 G T LPCAT1 Nonsense_Mutation p.C443* 0.12 TCGA-FV-A23B-01 5 171296743 171296743 C T FBXW11 Missense_Mutation p.R486H 0.46 tolerated(0.23) benign(0.033) TCGA-FV-A23B-01 5 176317835 176317835 C T HK3 Silent p.T174T 0.35 TCGA-FV-A23B-01 5 52084218 52084218 G C ITGA1 Missense_Mutation p.V11L 0.33 tolerated(0.3) benign(0) TCGA-FV-A23B-01 5 55202077 55202077 G C IL31RA Missense_Mutation p.E405Q 0.49 tolerated(0.37) benign(0.059) TCGA-FV-A23B-01 5 63256420 63256420 T A HTR1A Missense_Mutation p.H376L 0.36 tolerated(0.62) benign(0.122) TCGA-FV-A23B-01 5 79287047 79287047 C A MTX3 5'UTR 0.55 TCGA-FV-A23B-01 6 117718163 117718163 G A ROS1 Silent p.L232L 0.78 TCGA-FV-A23B-01 6 123319163 123319163 C T CLVS2 Nonsense_Mutation p.Q81* 0.69 TCGA-FV-A23B-01 6 167438330 167438330 A G FGFR1OP Silent p.L289L 0.75 TCGA-FV-A23B-01 6 170592756 170592756 C T DLL1 Silent p.E537E 0.50 TCGA-FV-A23B-01 6 31324160 31324161 - A HLA-B Frame_Shift_Ins p.R135Sfs*4 0.31 TCGA-FV-A23B-01 6 31778553 31778553 A G HSPA1L Silent p.A399A 0.09 TCGA-FV-A23B-01 6 49666218 49666218 T A CRISP2 Missense_Mutation p.T92S 0.12 tolerated(0.18) benign(0.196) TCGA-FV-A23B-01 6 75855116 75855116 G A COL12A1 Missense_Mutation p.T1539M 0.70 probably_damaging(1) TCGA-FV-A23B-01 7 126542649 126542649 C A GRM8 Missense_Mutation p.G368V 0.35 tolerated(0.06) benign(0.005) TCGA-FV-A23B-01 7 126542650 126542650 C A GRM8 Missense_Mutation p.G368C 0.33 deleterious(0.01) possibly_damaging(0.75) TCGA-FV-A23B-01 7 48506582 48506582 G A ABCA13 Missense_Mutation p.R4282H 0.27 benign(0) TCGA-FV-A23B-01 7 56170696 56170696 C A CHCHD2 Missense_Mutation p.Q103H 0.11 tolerated(0.29) benign(0.06) TCGA-FV-A23B-01 7 6370386 6370386 C T FAM220A Missense_Mutation p.G134R 0.29 tolerated(0.34) benign(0.145) TCGA-FV-A23B-01 8 145106247 145106247 G T OPLAH Silent p.R1283R 0.09 TCGA-FV-A23B-01 8 145112593 145112593 C T OPLAH Missense_Mutation p.A394T 0.39 deleterious(0) probably_damaging(0.992) TCGA-FV-A23B-01 8 192905 192905 G T ZNF596 Missense_Mutation p.D11Y 0.11 deleterious(0) probably_damaging(1) TCGA-FV-A23B-01 8 2024362 2024362 G A MYOM2 Missense_Mutation p.R421Q 0.31 deleterious(0) possibly_damaging(0.733) TCGA-FV-A23B-01 8 2820093 2820093 A G CSMD1 Missense_Mutation p.S3175P 0.44 probably_damaging(0.999) TCGA-FV-A23B-01 8 62626969 62626969 C G ASPH 5'UTR 0.43 TCGA-FV-A23B-01 8 6681084 6681084 A T XKR5 RNA 0.41 TCGA-FV-A23B-01 8 94770714 94770714 G T TMEM67 Missense_Mutation p.G106C 0.10 deleterious(0.01) probably_damaging(0.946) TCGA-FV-A23B-01 9 123199606 123199606 G A CDK5RAP2 Silent p.L1308L 0.48 TCGA-FV-A23B-01 9 124751326 124751326 C T TTLL11 Intron 0.17 TCGA-FV-A23B-01 9 32493893 32493893 T - DDX58 Frame_Shift_Del p.I97Lfs*11 0.08 TCGA-FV-A23B-01 9 74481719 74481719 T G ABHD17B Missense_Mutation p.E284A 0.41 deleterious(0) probably_damaging(0.944) TCGA-FV-A23B-01 X 114141874 114141874 G T HTR2C Nonsense_Mutation p.E425* 0.38 TCGA-FV-A23B-01 X 130678192 130678192 A G OR13H1 Missense_Mutation p.I49V 0.37 tolerated(0.75) benign(0.009) TCGA-FV-A23B-01 X 148584736 148584736 C T IDS Intron 0.39 TCGA-FV-A23B-01 X 152101462 152101462 G A ZNF185 Silent p.T355T 0.45 TCGA-FV-A23B-01 X 20206011 20206011 G A RPS6KA3 Missense_Mutation p.P237S 0.40 deleterious(0) probably_damaging(1) TCGA-FV-A23B-01 X 38525510 38525510 G C TSPAN7 Missense_Mutation p.G73R 0.36 deleterious(0) probably_damaging(0.997) TCGA-FV-A23B-01 X 53270991 53270991 A G IQSEC2 Missense_Mutation p.V997A 0.11 deleterious(0.02) possibly_damaging(0.761) TCGA-FV-A2QQ-01 10 118896162 118896162 C T VAX1 Missense_Mutation p.G84R 0.28 deleterious(0) unknown(0) TCGA-FV-A2QQ-01 10 118896163 118896163 C T VAX1 Silent p.K83K 0.28 TCGA-FV-A2QQ-01 10 18292223 18292223 G A SLC39A12 Missense_Mutation p.C628Y 0.40 tolerated(1) possibly_damaging(0.612) TCGA-FV-A2QQ-01 10 26436361 26436361 C A MYO3A Silent p.V836V 0.13 TCGA-FV-A2QQ-01 10 26465727 26465727 A G MYO3A Missense_Mutation p.H1464R 0.26 tolerated_low_confidence(0.66) benign(0) TCGA-FV-A2QQ-01 10 48371172 48371172 G A ZNF488 Missense_Mutation p.V214I 0.27 tolerated(0.14) benign(0.008) TCGA-FV-A2QQ-01 10 50151490 50151490 C A WDFY4 Nonsense_Mutation p.S2582* 0.24 TCGA-FV-A2QQ-01 10 50824554 50824554 A G CHAT Missense_Mutation p.H98R 0.08 deleterious_low_confidence(0.01) benign(0.002) TCGA-FV-A2QQ-01 10 70192040 70192040 C G DNA2 Missense_Mutation p.R685P 0.13 deleterious(0.03) possibly_damaging(0.874) TCGA-FV-A2QQ-01 10 91193059 91193059 C A SLC16A12 Missense_Mutation p.S438I 0.31 deleterious(0) possibly_damaging(0.873) TCGA-FV-A2QQ-01 11 100999292 100999292 G C PGR Missense_Mutation p.C170W 0.38 deleterious_low_confidence(0) benign(0.273) TCGA-FV-A2QQ-01 11 105009742 105009742 G T CARD18 Missense_Mutation p.A24D 0.47 deleterious(0.04) benign(0.407) TCGA-FV-A2QQ-01 11 10797162 10797162 T A CTR9 Missense_Mutation p.L1026H 0.18 tolerated(0.19) possibly_damaging(0.869) TCGA-FV-A2QQ-01 11 108712068 108712068 G T DDX10 Missense_Mutation p.Q704H 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-FV-A2QQ-01 11 111166919 111166919 C G COLCA1 Missense_Mutation p.L95F 0.14 possibly_damaging(0.765) TCGA-FV-A2QQ-01 11 117784524 117784524 T C TMPRSS13 Silent p.S259S 0.21 TCGA-FV-A2QQ-01 11 121986261 121986261 A T BLID 3'UTR 0.22 TCGA-FV-A2QQ-01 11 2417938 2417938 G T CD81 Silent p.V214V 0.11 TCGA-FV-A2QQ-01 11 74168404 74168404 C G KCNE3 Missense_Mutation p.A69P 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-FV-A2QQ-01 11 89774525 89774525 G T TRIM49C Missense_Mutation p.C389F 0.43 tolerated(0.51) benign(0.005) TCGA-FV-A2QQ-01 12 10205339 10205339 A T CLEC9A Missense_Mutation p.D18V 0.27 deleterious(0.02) benign(0.026) TCGA-FV-A2QQ-01 12 10587104 10587104 C T KLRC2 Silent p.P104P 0.17 TCGA-FV-A2QQ-01 12 122107446 122107446 C A MORN3 5'UTR 0.22 TCGA-FV-A2QQ-01 12 12273905 12273905 C T LRP6 3'UTR 0.15 TCGA-FV-A2QQ-01 12 132588784 132588791 GGGAAGCC - EP400NL Intron 0.24 TCGA-FV-A2QQ-01 12 48359775 48359775 A G TMEM106C Missense_Mutation p.I136V 0.27 tolerated(0.16) benign(0.058) TCGA-FV-A2QQ-01 12 49724529 49724529 G A TROAP Missense_Mutation p.G634E 0.35 tolerated(1) benign(0.001) TCGA-FV-A2QQ-01 12 55040929 55040929 C A DCD Missense_Mutation p.A25S 0.35 tolerated_low_confidence(0.21) possibly_damaging(0.709) TCGA-FV-A2QQ-01 12 7047886 7047886 C T ATN1 Silent p.V920V 0.29 TCGA-FV-A2QQ-01 12 78400495 78400495 G A NAV3 Missense_Mutation p.A393T 0.22 tolerated(0.21) benign(0.003) TCGA-FV-A2QQ-01 13 106142291 106142291 C A DAOA Missense_Mutation p.A108E 0.28 tolerated_low_confidence(0.28) possibly_damaging(0.765) TCGA-FV-A2QQ-01 13 37271783 37271783 C A SERTM1 3'UTR 0.31 TCGA-FV-A2QQ-01 13 39587551 39587551 C T PROSER1 Missense_Mutation p.S613N 0.06 deleterious_low_confidence(0.04) probably_damaging(0.991) TCGA-FV-A2QQ-01 14 104506642 104506642 G A TDRD9 Missense_Mutation p.V1276I 0.29 deleterious(0.01) probably_damaging(0.92) TCGA-FV-A2QQ-01 14 20822996 20822996 A C PARP2 Silent p.A277A 0.33 TCGA-FV-A2QQ-01 14 24657605 24657605 T C IPO4 Missense_Mutation p.T61A 0.38 tolerated(0.07) benign(0.003) TCGA-FV-A2QQ-01 14 42356953 42356953 T G LRFN5 Missense_Mutation p.I375M 0.35 tolerated(0.06) possibly_damaging(0.634) TCGA-FV-A2QQ-01 14 74989512 74989512 G T LTBP2 Silent p.P880P 0.40 TCGA-FV-A2QQ-01 15 40585896 40585896 G A PLCB2 Silent p.R697R 0.24 TCGA-FV-A2QQ-01 15 42436338 42436338 T A PLA2G4F Silent p.T660T 0.26 TCGA-FV-A2QQ-01 15 75969717 75969717 C T CSPG4 Missense_Mutation p.V1715I 0.43 tolerated(0.26) benign(0.241) TCGA-FV-A2QQ-01 15 79298691 79298691 C T RASGRF1 Missense_Mutation p.A651T 0.28 deleterious(0) probably_damaging(0.957) TCGA-FV-A2QQ-01 15 96880887 96880887 A T NR2F2 3'UTR 0.15 TCGA-FV-A2QQ-01 16 1550623 1550623 G A TELO2 Missense_Mutation p.V402M 0.50 deleterious(0) probably_damaging(0.981) TCGA-FV-A2QQ-01 16 1634278 1634278 G - IFT140 Frame_Shift_Del p.T434Rfs*54 0.33 TCGA-FV-A2QQ-01 16 67424387 67424387 C T TPPP3 Missense_Mutation p.V113I 0.25 tolerated(0.17) benign(0.005) TCGA-FV-A2QQ-01 17 15510886 15510886 A T RP11-385D13.1 Splice_Site p.X721_splice 0.41 TCGA-FV-A2QQ-01 17 20769875 20769875 G - CCDC144NL Frame_Shift_Del p.P186Hfs*35 0.19 TCGA-FV-A2QQ-01 17 27943827 27943828 CT - CORO6 Frame_Shift_Del p.E299Afs*33 0.23 TCGA-FV-A2QQ-01 17 39975631 39975631 C T FKBP10 Silent p.D299D 0.14 TCGA-FV-A2QQ-01 17 76183452 76183452 A G AFMID Translation_Start_Site p.M1? 0.28 tolerated_low_confidence(0.61) benign(0) TCGA-FV-A2QQ-01 17 76565546 76565546 G A DNAH17 Silent p.L370L 0.33 TCGA-FV-A2QQ-01 17 77914510 77914510 T C TBC1D16 3'UTR 0.38 TCGA-FV-A2QQ-01 18 48450496 48450496 A T ME2 Missense_Mutation p.Q362L 0.13 deleterious(0) probably_damaging(0.999) TCGA-FV-A2QQ-01 18 72183571 72183571 G T CNDP2 Missense_Mutation p.G338C 0.36 deleterious(0) probably_damaging(1) TCGA-FV-A2QQ-01 18 72183572 72183572 G T CNDP2 Missense_Mutation p.G338V 0.34 deleterious(0) probably_damaging(0.968) TCGA-FV-A2QQ-01 19 11728045 11728045 A G ZNF627 Missense_Mutation p.R243G 0.05 deleterious(0) probably_damaging(0.982) TCGA-FV-A2QQ-01 19 20807980 20807980 C A ZNF626 Missense_Mutation p.G235C 0.18 deleterious(0) probably_damaging(0.979) TCGA-FV-A2QQ-01 19 38916847 38916847 G - RASGRP4 5'Flank 0.26 TCGA-FV-A2QQ-01 19 39908236 39908236 T C PLEKHG2 Silent p.G262G 0.07 TCGA-FV-A2QQ-01 19 436421 436421 T C SHC2 Missense_Mutation p.D262G 0.24 deleterious(0) probably_damaging(0.994) TCGA-FV-A2QQ-01 19 44116772 44116772 G A SRRM5 Missense_Mutation p.G167R 0.24 tolerated(0.26) benign(0) TCGA-FV-A2QQ-01 19 46857048 46857048 C T PPP5C Silent p.I55I 0.27 TCGA-FV-A2QQ-01 19 4792915 4792915 A C FEM1A Missense_Mutation p.Y350S 0.30 tolerated(0.19) benign(0.06) TCGA-FV-A2QQ-01 19 50309033 50309033 C T AP2A1 Missense_Mutation p.L884F 0.43 deleterious(0) benign(0.051) TCGA-FV-A2QQ-01 19 51875422 51875422 A G NKG7 Silent p.F99F 0.19 TCGA-FV-A2QQ-01 19 52468795 52468795 T G ZNF350 Missense_Mutation p.N304T 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-FV-A2QQ-01 19 53014979 53014979 C A ZNF578 Missense_Mutation p.H449N 0.28 deleterious(0) probably_damaging(0.975) TCGA-FV-A2QQ-01 19 53668481 53668481 C A ZNF665 Missense_Mutation p.R421L 0.30 tolerated(0.08) benign(0.313) TCGA-FV-A2QQ-01 19 54445427 54445427 G A CACNG7 Silent p.A236A 0.40 TCGA-FV-A2QQ-01 19 55453049 55453049 G C NLRP7 Missense_Mutation p.Q11E 0.26 deleterious(0.03) possibly_damaging(0.848) TCGA-FV-A2QQ-01 19 57326459 57326459 C T PEG3 Silent p.V1117V 0.35 TCGA-FV-A2QQ-01 19 7975100 7975100 G T MAP2K7 Intron 0.25 TCGA-FV-A2QQ-01 1 110029743 110029743 C - ATXN7L2 Frame_Shift_Del p.P139Qfs*107 0.25 TCGA-FV-A2QQ-01 1 111738547 111738547 T A DENND2D Silent p.S212S 0.21 TCGA-FV-A2QQ-01 1 145474461 145474461 C T ANKRD34A Missense_Mutation p.P378L 0.15 tolerated(0.72) benign(0.007) TCGA-FV-A2QQ-01 1 152976105 152976105 C A SPRR3 3'UTR 0.09 TCGA-FV-A2QQ-01 1 156628362 156628362 C A BCAN Missense_Mutation p.P822H 0.10 deleterious(0.01) probably_damaging(1) TCGA-FV-A2QQ-01 1 158533217 158533217 A T OR6P1 Missense_Mutation p.Y60N 0.43 deleterious(0) possibly_damaging(0.739) TCGA-FV-A2QQ-01 1 158655029 158655029 T C SPTA1 Missense_Mutation p.R45G 0.48 deleterious(0) probably_damaging(0.997) TCGA-FV-A2QQ-01 1 160001651 160001651 A G PIGM 5'UTR 0.31 TCGA-FV-A2QQ-01 1 165533062 165533062 T A LRRC52 3'UTR 0.44 TCGA-FV-A2QQ-01 1 168195328 168195328 T C SFT2D2 Missense_Mutation p.L4P 0.36 deleterious(0) possibly_damaging(0.841) TCGA-FV-A2QQ-01 1 169702100 169702100 G T SELE Missense_Mutation p.T26N 0.13 tolerated(0.29) benign(0.051) TCGA-FV-A2QQ-01 1 182572454 182572454 C T RGS16 Missense_Mutation p.R22H 0.22 deleterious(0.01) probably_damaging(0.98) TCGA-FV-A2QQ-01 1 210637950 210637950 G A HHAT Missense_Mutation p.A321T 0.42 tolerated(0.1) benign(0.043) TCGA-FV-A2QQ-01 1 212799352 212799352 C A FAM71A Missense_Mutation p.T378N 0.26 deleterious(0) possibly_damaging(0.524) TCGA-FV-A2QQ-01 1 220870112 220870112 A G C1orf115 3'UTR 0.09 TCGA-FV-A2QQ-01 1 248004229 248004229 C A OR11L1 3'UTR 0.24 TCGA-FV-A2QQ-01 1 249106250 249106250 T C SH3BP5L Missense_Mutation p.D344G 0.20 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-FV-A2QQ-01 1 42914268 42914268 G T ZMYND12 Nonsense_Mutation p.Y98* 0.44 TCGA-FV-A2QQ-01 1 75190517 75190517 T C CRYZ Intron 0.29 TCGA-FV-A2QQ-01 1 93307405 93307405 C T RPL5 Missense_Mutation p.R293W 0.29 tolerated(0.14) possibly_damaging(0.898) TCGA-FV-A2QQ-01 20 32000381 32000381 C T SNTA1 Silent p.Q303Q 0.33 TCGA-FV-A2QQ-01 20 60348088 60348088 G T CDH4 Silent p.L142L 0.19 TCGA-FV-A2QQ-01 20 61867529 61867529 G - BIRC7 Frame_Shift_Del p.E28Sfs*13 0.17 TCGA-FV-A2QQ-01 21 19651306 19651306 A C TMPRSS15 Silent p.A913A 0.24 TCGA-FV-A2QQ-01 22 24034460 24034460 G A RGL4 Intron 0.35 TCGA-FV-A2QQ-01 22 29445870 29445871 TG - ZNRF3 Frame_Shift_Del p.V568Gfs*5 0.20 TCGA-FV-A2QQ-01 22 41792015 41792016 - G TEF 3'UTR 0.31 TCGA-FV-A2QQ-01 22 45946402 45946402 A G FBLN1 Missense_Mutation p.N535S 0.19 tolerated(0.18) probably_damaging(0.973) TCGA-FV-A2QQ-01 22 46594485 46594485 A G PPARA Missense_Mutation p.T69A 0.11 tolerated_low_confidence(0.75) benign(0.017) TCGA-FV-A2QQ-01 22 47085919 47085919 T C CERK Missense_Mutation p.E504G 0.18 deleterious(0) probably_damaging(0.957) TCGA-FV-A2QQ-01 2 111399745 111399745 G A BUB1 Missense_Mutation p.T805I 0.10 tolerated(0.09) benign(0.046) TCGA-FV-A2QQ-01 2 113940279 113940279 C T PSD4 Silent p.D82D 0.35 TCGA-FV-A2QQ-01 2 141806729 141806729 C A LRP1B Missense_Mutation p.D539Y 0.30 possibly_damaging(0.861) TCGA-FV-A2QQ-01 2 153471433 153471433 T C FMNL2 Silent p.D377D 0.36 TCGA-FV-A2QQ-01 2 154334986 154334986 G T RPRM Missense_Mutation p.Q32K 0.28 tolerated(0.94) benign(0.003) TCGA-FV-A2QQ-01 2 178969026 178969026 T A CYCTP Intron 0.26 TCGA-FV-A2QQ-01 2 179436094 179436094 C G TTN Missense_Mutation p.R24922T 0.28 TCGA-FV-A2QQ-01 2 179636192 179636192 G T TTN Missense_Mutation p.A2621D 0.13 TCGA-FV-A2QQ-01 2 182358113 182358113 C T ITGA4 Silent p.G405G 0.24 TCGA-FV-A2QQ-01 2 191927489 191927489 T C STAT4 Missense_Mutation p.N314D 0.28 deleterious(0.02) benign(0.41) TCGA-FV-A2QQ-01 2 21232125 21232125 C - APOB Frame_Shift_Del p.V2539* 0.09 TCGA-FV-A2QQ-01 2 230724096 230724096 G A TRIP12 Missense_Mutation p.T98I 0.34 tolerated_low_confidence(0.2) benign(0.001) TCGA-FV-A2QQ-01 2 237406078 237406078 C T IQCA1 Missense_Mutation p.D22N 0.23 tolerated(0.14) benign(0.047) TCGA-FV-A2QQ-01 2 27709063 27709063 A T IFT172 Intron 0.29 TCGA-FV-A2QQ-01 2 3727570 3727570 C T ALLC Missense_Mutation p.A95V 0.37 deleterious(0) probably_damaging(0.911) TCGA-FV-A2QQ-01 3 124540317 124540317 T G ITGB5 Missense_Mutation p.K262T 0.18 deleterious(0) possibly_damaging(0.874) TCGA-FV-A2QQ-01 3 138665659 138665659 A T FOXL2 5'UTR 0.11 TCGA-FV-A2QQ-01 3 195513177 195513177 G T MUC4 Silent p.A1758A 0.14 TCGA-FV-A2QQ-01 3 361529 361529 G T CHL1 Missense_Mutation p.A24S 0.32 tolerated(0.12) possibly_damaging(0.516) TCGA-FV-A2QQ-01 3 37367438 37367438 C A GOLGA4 Missense_Mutation p.A1376D 0.34 probably_damaging(0.971) TCGA-FV-A2QQ-01 3 41274911 41274911 T G CTNNB1 Missense_Mutation p.N387K 0.34 deleterious(0) probably_damaging(0.996) TCGA-FV-A2QQ-01 3 48612816 48612816 C T COL7A1 Missense_Mutation p.G2046S 0.43 unknown(0) TCGA-FV-A2QQ-01 3 49200370 49200370 C A CCDC71 Silent p.L424L 0.16 TCGA-FV-A2QQ-01 3 56597778 56597778 A G CCDC66 Missense_Mutation p.T57A 0.13 tolerated(0.07) possibly_damaging(0.884) TCGA-FV-A2QQ-01 3 89528848 89528848 G T EPHA3 3'UTR 0.52 TCGA-FV-A2QQ-01 4 146696966 146696966 C T ZNF827 Missense_Mutation p.G890R 0.36 tolerated(0.78) benign(0.041) TCGA-FV-A2QQ-01 4 151770044 151770044 G A LRBA Missense_Mutation p.S1422F 0.40 deleterious(0) probably_damaging(0.996) TCGA-FV-A2QQ-01 4 3441484 3441484 A G RGS12 3'UTR 0.25 TCGA-FV-A2QQ-01 4 52948586 52948586 T C SPATA18 Silent p.A463A 0.33 TCGA-FV-A2QQ-01 4 74270860 74270860 A G ALB Missense_Mutation p.K36R 0.21 tolerated(0.22) benign(0.011) TCGA-FV-A2QQ-01 4 79396668 79396668 G T FRAS1 Missense_Mutation p.V2587F 0.35 probably_damaging(0.995) TCGA-FV-A2QQ-01 4 89772242 89772242 T C FAM13A Silent p.L312L 0.20 TCGA-FV-A2QQ-01 4 96141185 96141185 C A UNC5C Silent p.S417S 0.36 TCGA-FV-A2QQ-01 5 114506845 114506845 G T TRIM36 Intron 0.11 TCGA-FV-A2QQ-01 5 129241310 129241310 A T CHSY3 Missense_Mutation p.D263V 0.36 deleterious(0) probably_damaging(1) TCGA-FV-A2QQ-01 5 151304062 151304062 A G GLRA1 Missense_Mutation p.F17L 0.35 tolerated_low_confidence(0.87) benign(0.002) TCGA-FV-A2QQ-01 5 15936871 15936871 G A FBXL7 Missense_Mutation p.R351H 0.33 tolerated(0.52) possibly_damaging(0.719) TCGA-FV-A2QQ-01 5 179023595 179023595 C T RUFY1 Missense_Mutation p.A515V 0.32 tolerated(0.07) benign(0.015) TCGA-FV-A2QQ-01 5 179306633 179306633 T A TBC1D9B Nonsense_Mutation p.K471* 0.33 TCGA-FV-A2QQ-01 5 19473467 19473467 A C CDH18 Silent p.A747A 0.18 TCGA-FV-A2QQ-01 5 26881520 26881521 - A CDH9 Frame_Shift_Ins p.Q699Sfs*13 0.22 TCGA-FV-A2QQ-01 5 38451432 38451432 A G EGFLAM Silent p.R861R 0.24 TCGA-FV-A2QQ-01 5 45353238 45353238 T A HCN1 Missense_Mutation p.E447D 0.13 tolerated(0.39) benign(0) TCGA-FV-A2QQ-01 5 54468477 54468477 T C CDC20B Missense_Mutation p.E22G 0.16 deleterious(0) possibly_damaging(0.735) TCGA-FV-A2QQ-01 5 56178151 56178151 C G MAP3K1 Missense_Mutation p.L1042V 0.28 deleterious_low_confidence(0) possibly_damaging(0.871) TCGA-FV-A2QQ-01 5 63509811 63509811 G T RNF180 Missense_Mutation p.A220S 0.25 tolerated(0.1) benign(0) TCGA-FV-A2QQ-01 5 9629277 9629277 T A TAS2R1 Nonsense_Mutation p.K290* 0.27 TCGA-FV-A2QQ-01 6 109190048 109190048 C G ARMC2 Missense_Mutation p.P105A 0.32 tolerated(0.27) benign(0.002) TCGA-FV-A2QQ-01 6 160196295 160196295 C T ACAT2 Missense_Mutation p.A195V 0.23 deleterious(0.01) possibly_damaging(0.81) TCGA-FV-A2QQ-01 6 34827055 34827055 C G UHRF1BP1 Silent p.S974S 0.37 TCGA-FV-A2QQ-01 6 35923037 35923037 T A SLC26A8 Silent p.S708S 0.04 TCGA-FV-A2QQ-01 6 52334232 52334232 G A EFHC1 Silent p.L413L 0.30 TCGA-FV-A2QQ-01 6 56342207 56342207 C G DST Missense_Mutation p.C4581S 0.27 probably_damaging(0.999) TCGA-FV-A2QQ-01 6 57055398 57055398 C A RAB23 Missense_Mutation p.G192V 0.35 tolerated(0.12) possibly_damaging(0.526) TCGA-FV-A2QQ-01 6 74104168 74104168 C A DDX43 5'Flank 0.22 TCGA-FV-A2QQ-01 6 7585457 7585457 G A DSP Silent p.Q2654Q 0.21 TCGA-FV-A2QQ-01 6 76024199 76024199 G A FILIP1 Missense_Mutation p.T450I 0.31 tolerated(0.32) benign(0.058) TCGA-FV-A2QQ-01 7 103159876 103159876 T A RELN Missense_Mutation p.T2586S 0.12 tolerated(0.76) benign(0) TCGA-FV-A2QQ-01 7 128482659 128482659 C T FLNC Missense_Mutation p.R766W 0.40 deleterious(0) probably_damaging(0.916) TCGA-FV-A2QQ-01 7 128694954 128694954 T C TNPO3 5'UTR 0.31 TCGA-FV-A2QQ-01 7 143792372 143792372 A G OR2A12 Missense_Mutation p.M58V 0.33 deleterious(0) possibly_damaging(0.696) TCGA-FV-A2QQ-01 7 148312523 148312523 C G C7orf33 3'UTR 0.30 TCGA-FV-A2QQ-01 7 157369433 157369433 G C PTPRN2 Missense_Mutation p.F885L 0.21 deleterious(0) probably_damaging(1) TCGA-FV-A2QQ-01 7 2646793 2646793 C G IQCE Missense_Mutation p.T634S 0.07 tolerated(0.87) benign(0.005) TCGA-FV-A2QQ-01 7 89854507 89854507 A G STEAP2 Silent p.G37G 0.25 TCGA-FV-A2QQ-01 7 94953829 94953829 C A PON1 5'UTR 0.60 TCGA-FV-A2QQ-01 8 103237178 103237178 G T RRM2B Silent p.I130I 0.20 TCGA-FV-A2QQ-01 8 11705274 11705274 G - CTSB Frame_Shift_Del p.P197Hfs*78 0.20 TCGA-FV-A2QQ-01 8 127568717 127568717 C G FAM84B Missense_Mutation p.E306D 0.09 tolerated_low_confidence(0.1) benign(0.217) TCGA-FV-A2QQ-01 8 132051783 132051783 A C ADCY8 Missense_Mutation p.L266R 0.22 tolerated(0.12) possibly_damaging(0.454) TCGA-FV-A2QQ-01 8 3063095 3063095 G T CSMD1 Missense_Mutation p.P1639T 0.67 probably_damaging(1) TCGA-FV-A2QQ-01 8 87645119 87645119 T G CNGB3 Missense_Mutation p.Y394S 0.31 deleterious(0.03) probably_damaging(0.927) TCGA-FV-A2QQ-01 9 130428513 130428513 C A STXBP1 Silent p.L244L 0.29 TCGA-FV-A2QQ-01 9 131377967 131377967 C A SPTAN1 Missense_Mutation p.F1735L 0.06 deleterious(0.01) benign(0.02) TCGA-FV-A2QQ-01 9 136302887 136302887 A G ADAMTS13 Missense_Mutation p.H485R 0.22 deleterious(0.05) benign(0.202) TCGA-FV-A2QQ-01 9 35674288 35674288 A C CA9 Missense_Mutation p.E111A 0.28 deleterious_low_confidence(0) possibly_damaging(0.706) TCGA-FV-A2QQ-01 X 12906939 12906939 A G TLR7 3'UTR 0.83 TCGA-FV-A2QQ-01 X 5821576 5821576 G A NLGN4X Silent p.D381D 0.57 TCGA-FV-A2QQ-01 X 69942515 69942515 G A TEX11 Silent p.P334P 0.68 TCGA-FV-A2QR-01 10 70694063 70694063 C T DDX50 Missense_Mutation p.R450C 0.35 deleterious(0) probably_damaging(0.988) TCGA-FV-A2QR-01 10 76818256 76818256 A T DUPD1 Missense_Mutation p.V6E 0.28 tolerated_low_confidence(0.08) benign(0.004) TCGA-FV-A2QR-01 11 102826137 102826137 C T MMP13 Missense_Mutation p.R69Q 0.39 tolerated(0.52) benign(0.036) TCGA-FV-A2QR-01 11 118764607 118764607 G A CXCR5 Silent p.G118G 0.25 TCGA-FV-A2QR-01 11 128932247 128932247 T C ARHGAP32 Silent p.G283G 0.07 TCGA-FV-A2QR-01 11 44081484 44081484 C A ACCSL 3'UTR 0.37 TCGA-FV-A2QR-01 11 4944635 4944635 A G OR51G1 Missense_Mutation p.I312T 0.13 tolerated(0.4) benign(0.007) TCGA-FV-A2QR-01 11 55418935 55418935 G T OR4S2 Missense_Mutation p.A186S 0.37 deleterious(0.05) possibly_damaging(0.755) TCGA-FV-A2QR-01 11 58979671 58979671 G A MPEG1 Missense_Mutation p.A223V 0.44 deleterious(0.02) benign(0.345) TCGA-FV-A2QR-01 11 62361211 62361211 C T MTA2 3'UTR 0.28 TCGA-FV-A2QR-01 11 64326710 64326710 G A SLC22A11 Missense_Mutation p.R166Q 0.38 deleterious(0.05) probably_damaging(0.996) TCGA-FV-A2QR-01 11 73076917 73076917 C A ARHGEF17 Missense_Mutation p.R1974S 0.31 deleterious(0) probably_damaging(0.972) TCGA-FV-A2QR-01 11 94732090 94732104 CTGGGCCCCTGTGCC - KDM4D In_Frame_Del p.W519_P523del 0.31 TCGA-FV-A2QR-01 12 10954420 10954420 G A TAS2R7 Silent p.S250S 0.38 TCGA-FV-A2QR-01 12 120172998 120172998 C T CIT Silent p.T1041T 0.34 TCGA-FV-A2QR-01 12 125396988 125396988 C G UBC Missense_Mutation p.E444Q 0.25 deleterious(0.01) benign(0.34) TCGA-FV-A2QR-01 12 32136525 32136525 C T KIAA1551 Missense_Mutation p.S879L 0.27 tolerated(0.12) probably_damaging(0.936) TCGA-FV-A2QR-01 12 333670 333670 A G SLC6A13 Missense_Mutation p.L357P 0.37 deleterious(0) probably_damaging(1) TCGA-FV-A2QR-01 12 49525128 49525128 G T TUBA1B 5'UTR 0.38 TCGA-FV-A2QR-01 12 51457494 51457494 A G CSRNP2 3'UTR 0.50 TCGA-FV-A2QR-01 12 51457625 51457625 C A CSRNP2 Silent p.T512T 0.45 TCGA-FV-A2QR-01 12 51457641 51457641 C A CSRNP2 Missense_Mutation p.S507I 0.43 tolerated_low_confidence(0.09) benign(0.001) TCGA-FV-A2QR-01 12 51748219 51748219 G T GALNT6 Missense_Mutation p.P605T 0.11 deleterious(0.02) possibly_damaging(0.627) TCGA-FV-A2QR-01 12 54447662 54447662 G T HOXC4 5'UTR 0.35 TCGA-FV-A2QR-01 12 64889483 64889483 G C TBK1 Missense_Mutation p.E550Q 0.46 tolerated(1) benign(0.022) TCGA-FV-A2QR-01 12 67701207 67701207 C T CAND1 Missense_Mutation p.T987M 0.40 deleterious(0.03) probably_damaging(0.968) TCGA-FV-A2QR-01 12 7510070 7510070 T A CD163L1 Missense_Mutation p.N1431I 0.36 tolerated(0.21) benign(0.001) TCGA-FV-A2QR-01 12 78513703 78513703 A G NAV3 Missense_Mutation p.I1243V 0.38 tolerated(0.99) probably_damaging(0.992) TCGA-FV-A2QR-01 12 88486591 88486591 C A CEP290 Missense_Mutation p.D1110Y 0.37 possibly_damaging(0.698) TCGA-FV-A2QR-01 13 103701761 103701761 T C SLC10A2 Missense_Mutation p.N266S 0.38 deleterious(0.03) possibly_damaging(0.893) TCGA-FV-A2QR-01 13 20567643 20567643 C T ZMYM2 Missense_Mutation p.P144L 0.37 deleterious_low_confidence(0.04) benign(0.002) TCGA-FV-A2QR-01 13 32937516 32937516 A G BRCA2 Missense_Mutation p.Y2726C 0.38 deleterious(0) probably_damaging(1) TCGA-FV-A2QR-01 13 32953916 32953924 GATTTATAT - BRCA2 In_Frame_Del p.D2995_Y2997del 0.18 TCGA-FV-A2QR-01 13 44455558 44455558 C A LACC1 Missense_Mutation p.S146Y 0.31 tolerated(0.14) possibly_damaging(0.695) TCGA-FV-A2QR-01 13 88331838 88331838 A G SLITRK5 3'UTR 0.38 TCGA-FV-A2QR-01 14 100742844 100742844 C G YY1 Missense_Mutation p.F307L 0.24 tolerated(0.14) benign(0.224) TCGA-FV-A2QR-01 14 106303299 106303299 C A IGHD 3'UTR 0.31 TCGA-FV-A2QR-01 14 24517998 24517998 T C LRRC16B 5'Flank 0.38 TCGA-FV-A2QR-01 14 74083755 74083766 CAGGGCCAGCCT - ACOT6 5'UTR 0.47 TCGA-FV-A2QR-01 14 76117958 76117958 C T C14orf1 Missense_Mutation p.M121I 0.34 deleterious(0) probably_damaging(0.99) TCGA-FV-A2QR-01 14 92953018 92953024 TATCGGA - SLC24A4 Frame_Shift_Del p.I478Tfs*28 0.28 TCGA-FV-A2QR-01 15 20663201 20663201 A T HERC2P3 RNA 0.16 TCGA-FV-A2QR-01 15 40628995 40628995 T C C15orf52 Silent p.K298K 0.53 TCGA-FV-A2QR-01 15 74219024 74219024 C A LOXL1 5'UTR 0.30 TCGA-FV-A2QR-01 15 75047442 75047442 C A CYP1A2 3'UTR 0.48 TCGA-FV-A2QR-01 15 75310253 75310253 C T SCAMP5 Silent p.F112F 0.36 TCGA-FV-A2QR-01 15 78211470 78211470 T A RP11-114H24.7 Intron 0.38 TCGA-FV-A2QR-01 16 10527419 10527419 G A ATF7IP2 Silent p.E291E 0.25 TCGA-FV-A2QR-01 16 29841810 29841810 C G MVP Intron 0.38 TCGA-FV-A2QR-01 16 30793663 30793663 G A ZNF629 Silent p.Y662Y 0.30 TCGA-FV-A2QR-01 16 49412388 49412388 G A C16orf78 Missense_Mutation p.G93E 0.32 tolerated(0.29) benign(0.029) TCGA-FV-A2QR-01 16 53269094 53269094 A G CHD9 Intron 0.40 TCGA-FV-A2QR-01 16 70884465 70884465 T G HYDIN Silent p.T4179T 0.25 TCGA-FV-A2QR-01 16 70884466 70884466 G T HYDIN Missense_Mutation p.T4179K 0.25 benign(0.002) TCGA-FV-A2QR-01 16 70884467 70884467 T C HYDIN Missense_Mutation p.T4179A 0.26 benign(0.003) TCGA-FV-A2QR-01 16 81095083 81095083 G A C16orf46 Silent p.L291L 0.33 TCGA-FV-A2QR-01 17 29576138 29576138 G C NF1 Splice_Site p.X1370_splice 0.30 TCGA-FV-A2QR-01 17 32646502 32646502 C A CCL8 5'UTR 0.29 TCGA-FV-A2QR-01 17 39778675 39778675 C A KRT17 Missense_Mutation p.A202S 0.37 tolerated(0.3) benign(0.129) TCGA-FV-A2QR-01 17 4585844 4585844 T C PELP1 Missense_Mutation p.M199V 0.06 possibly_damaging(0.504) TCGA-FV-A2QR-01 17 56621120 56621120 A G C17orf47 Missense_Mutation p.V143A 0.03 tolerated(0.4) possibly_damaging(0.728) TCGA-FV-A2QR-01 17 62796826 62796826 C G PLEKHM1P RNA 0.28 TCGA-FV-A2QR-01 17 65105654 65105654 G A HELZ Missense_Mutation p.P1356L 0.26 tolerated_low_confidence(0.07) probably_damaging(0.991) TCGA-FV-A2QR-01 17 7721766 7721766 T C DNAH2 Silent p.A3508A 0.56 TCGA-FV-A2QR-01 17 78972946 78972946 C G CHMP6 Missense_Mutation p.A200G 0.31 deleterious(0) probably_damaging(0.997) TCGA-FV-A2QR-01 18 56247584 56247584 C A ALPK2 Nonsense_Mutation p.E142* 0.40 TCGA-FV-A2QR-01 19 13910558 13910558 C T ZSWIM4 Missense_Mutation p.P60S 0.37 deleterious(0) probably_damaging(0.932) TCGA-FV-A2QR-01 19 22157531 22157531 C G ZNF208 Missense_Mutation p.R102T 0.37 tolerated(0.36) benign(0.244) TCGA-FV-A2QR-01 19 23938330 23938330 C A ZNF681 Silent p.V9V 0.33 TCGA-FV-A2QR-01 19 35832037 35832037 C G CD22 Silent p.V501V 0.47 TCGA-FV-A2QR-01 19 36342181 36342181 A T NPHS1 Missense_Mutation p.V127E 0.27 deleterious(0.01) probably_damaging(0.985) TCGA-FV-A2QR-01 19 41800283 41800283 C A HNRNPUL1 Missense_Mutation p.T436K 0.34 deleterious(0.01) unknown(0) TCGA-FV-A2QR-01 19 48565265 48565265 T C PLA2G4C Missense_Mutation p.D426G 0.43 deleterious(0.01) benign(0.331) TCGA-FV-A2QR-01 19 53138403 53138403 A G ZNF83 5'UTR 0.50 TCGA-FV-A2QR-01 19 57175640 57175640 C A ZNF835 Missense_Mutation p.Q309H 0.59 tolerated(0.28) benign(0.085) TCGA-FV-A2QR-01 1 114380814 114380814 G A PTPN22 Missense_Mutation p.P403L 0.35 tolerated(0.07) benign(0.031) TCGA-FV-A2QR-01 1 150551951 150551951 G A MCL1 Missense_Mutation p.A19V 0.24 deleterious_low_confidence(0.01) probably_damaging(0.935) TCGA-FV-A2QR-01 1 151867506 151867506 T G THEM4 Missense_Mutation p.Q88H 0.04 tolerated(0.2) benign(0.027) TCGA-FV-A2QR-01 1 155270745 155270745 C A PKLR Intron 0.17 TCGA-FV-A2QR-01 1 156878092 156878092 T C PEAR1 Missense_Mutation p.C359R 0.12 deleterious(0) probably_damaging(0.997) TCGA-FV-A2QR-01 1 158988074 158988074 A T IFI16 Missense_Mutation p.K202I 0.33 deleterious(0) benign(0.067) TCGA-FV-A2QR-01 1 171510373 171510373 C T PRRC2C Silent p.V1254V 0.06 TCGA-FV-A2QR-01 1 179564922 179564922 C G TDRD5 Nonsense_Mutation p.S267* 0.16 TCGA-FV-A2QR-01 1 180897384 180897384 C A KIAA1614 Intron 0.15 TCGA-FV-A2QR-01 1 193028900 193028900 G A UCHL5 5'Flank 0.71 TCGA-FV-A2QR-01 1 227922402 227922402 G A JMJD4 Silent p.G172G 0.58 TCGA-FV-A2QR-01 1 23232489 23232489 G T EPHB2 Missense_Mutation p.G593V 0.41 deleterious(0) probably_damaging(0.996) TCGA-FV-A2QR-01 1 236749177 236749177 C G HEATR1 Missense_Mutation p.M664I 0.07 tolerated(0.12) benign(0.002) TCGA-FV-A2QR-01 1 35656352 35656352 T G SFPQ Missense_Mutation p.K421T 0.38 deleterious(0.02) probably_damaging(0.982) TCGA-FV-A2QR-01 1 47748019 47748019 T C STIL Missense_Mutation p.K416E 0.08 deleterious(0.03) possibly_damaging(0.885) TCGA-FV-A2QR-01 1 67241997 67241997 C G TCTEX1D1 Missense_Mutation p.H83D 0.41 tolerated(0.83) benign(0.008) TCGA-FV-A2QR-01 1 71478142 71478142 T A PTGER3 Missense_Mutation p.N308I 0.34 deleterious(0.02) possibly_damaging(0.756) TCGA-FV-A2QR-01 1 92789250 92789250 C G RPAP2 Missense_Mutation p.S258C 0.49 tolerated(0.08) possibly_damaging(0.798) TCGA-FV-A2QR-01 20 30409394 30409394 A G MYLK2 Missense_Mutation p.E209G 0.37 deleterious(0.01) benign(0.309) TCGA-FV-A2QR-01 20 590549 590549 G A TCF15 Silent p.I111I 0.15 TCGA-FV-A2QR-01 21 46713386 46713386 C T LINC00205 RNA 0.33 TCGA-FV-A2QR-01 22 21403327 21403327 T C AC002472.13 Missense_Mutation p.M168T 0.16 deleterious(0.01) benign(0.036) TCGA-FV-A2QR-01 22 23950866 23950866 A T C22orf43 3'UTR 0.27 TCGA-FV-A2QR-01 22 24582054 24582054 G A SUSD2 Silent p.E470E 0.24 TCGA-FV-A2QR-01 22 24937089 24937089 T A GUCD1 3'UTR 0.52 TCGA-FV-A2QR-01 22 31333805 31333805 T C MORC2 Missense_Mutation p.I394V 0.49 deleterious(0.03) benign(0.014) TCGA-FV-A2QR-01 22 40660706 40660706 G A TNRC6B Missense_Mutation p.G158S 0.26 tolerated(0.08) benign(0.146) TCGA-FV-A2QR-01 22 42057392 42057407 AGCTTGTTTACCCACC - XRCC6 Frame_Shift_Del p.L528Ifs*32 0.17 TCGA-FV-A2QR-01 2 100029414 100029414 C T REV1 Splice_Site p.X651_splice 0.40 TCGA-FV-A2QR-01 2 141819744 141819744 T G LRP1B Missense_Mutation p.Q371P 0.36 benign(0.153) TCGA-FV-A2QR-01 2 178545631 178545631 C A PDE11A Missense_Mutation p.E782D 0.41 tolerated(0.07) possibly_damaging(0.663) TCGA-FV-A2QR-01 2 20823705 20823705 C A HS1BP3 Missense_Mutation p.G291W 0.33 deleterious(0.01) possibly_damaging(0.867) TCGA-FV-A2QR-01 2 219892384 219892384 G A CCDC108 Silent p.F733F 0.34 TCGA-FV-A2QR-01 2 29451807 29451807 C A ALK Missense_Mutation p.G920C 0.46 deleterious(0) probably_damaging(1) TCGA-FV-A2QR-01 2 30480502 30480502 C A LBH 3'UTR 0.25 TCGA-FV-A2QR-01 3 113850192 113850192 T G DRD3 Missense_Mutation p.Q260P 0.35 tolerated(0.32) possibly_damaging(0.713) TCGA-FV-A2QR-01 3 14180787 14180787 C T TMEM43 Silent p.L330L 0.41 TCGA-FV-A2QR-01 3 147128512 147128526 GCCGCGCATCACGGC - ZIC1 In_Frame_Del p.A206_A210del 0.71 TCGA-FV-A2QR-01 3 151055763 151055763 C A P2RY12 Missense_Mutation p.A291S 0.68 tolerated(0.28) benign(0.207) TCGA-FV-A2QR-01 3 154861272 154861272 G C MME Missense_Mutation p.R410P 0.05 deleterious(0.03) possibly_damaging(0.678) TCGA-FV-A2QR-01 3 187388043 187388043 G A SST Silent p.L13L 0.45 TCGA-FV-A2QR-01 3 50103698 50103698 C - RBM6 Frame_Shift_Del p.I902Mfs*69 0.26 TCGA-FV-A2QR-01 3 69813025 69813025 C T MITF Intron 0.38 TCGA-FV-A2QR-01 4 101982264 101982264 G A PPP3CA Missense_Mutation p.S379L 0.22 tolerated(0.05) benign(0.044) TCGA-FV-A2QR-01 4 102783739 102783739 G T BANK1 Missense_Mutation p.E227D 0.38 deleterious(0.01) probably_damaging(0.99) TCGA-FV-A2QR-01 4 1377635 1377635 G A UVSSA Missense_Mutation p.G648D 0.42 tolerated(0.07) benign(0.076) TCGA-FV-A2QR-01 4 47916121 47916121 C T NFXL1 Missense_Mutation p.G34R 0.42 tolerated_low_confidence(0.29) possibly_damaging(0.577) TCGA-FV-A2QR-01 4 57340266 57340277 ATCTCGTCCGAA - SRP72 In_Frame_Del p.L135_N138del 0.29 TCGA-FV-A2QR-01 5 115249174 115249174 C A AP3S1 Missense_Mutation p.P190H 0.18 deleterious_low_confidence(0) benign(0.365) TCGA-FV-A2QR-01 5 131825125 131825125 T G IRF1 Missense_Mutation p.I16L 0.31 deleterious(0) probably_damaging(0.997) TCGA-FV-A2QR-01 5 132334321 132334321 T C ZCCHC10 Missense_Mutation p.D156G 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-FV-A2QR-01 5 1331943 1331943 T C CLPTM1L Missense_Mutation p.K316R 0.24 tolerated(0.22) benign(0.042) TCGA-FV-A2QR-01 5 147807217 147807217 G A FBXO38 Missense_Mutation p.R787K 0.33 tolerated(0.38) probably_damaging(0.937) TCGA-FV-A2QR-01 5 150908876 150908876 T C FAT2 Missense_Mutation p.S3297G 0.37 benign(0) TCGA-FV-A2QR-01 5 16508838 16508838 A C FAM134B Intron 0.16 TCGA-FV-A2QR-01 5 16783454 16783454 G T MYO10 Missense_Mutation p.L198I 0.20 deleterious(0.02) probably_damaging(0.994) TCGA-FV-A2QR-01 5 180036905 180036905 C A FLT4 Silent p.V1269V 0.39 TCGA-FV-A2QR-01 5 477525 477525 G T SLC9A3 Missense_Mutation p.S561Y 0.21 deleterious(0.05) probably_damaging(0.99) TCGA-FV-A2QR-01 5 52356813 52356813 A T ITGA2 Silent p.I465I 0.38 TCGA-FV-A2QR-01 5 55206415 55206415 G T IL31RA Missense_Mutation p.K519N 0.39 tolerated(0.69) benign(0.003) TCGA-FV-A2QR-01 5 56205565 56205565 C T SETD9 Silent p.N31N 0.41 TCGA-FV-A2QR-01 5 82835029 82835029 G A VCAN Silent p.T2069T 0.40 TCGA-FV-A2QR-01 5 89954088 89954088 T C GPR98 Missense_Mutation p.I1582T 0.43 probably_damaging(0.954) TCGA-FV-A2QR-01 6 126080600 126080600 C T HEY2 Silent p.H222H 0.65 TCGA-FV-A2QR-01 6 142539830 142539830 C T VTA1 3'UTR 0.80 TCGA-FV-A2QR-01 6 30458995 30458995 C G HLA-E Missense_Mutation p.P231R 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-FV-A2QR-01 6 30679231 30679231 G A MDC1 Missense_Mutation p.P727S 0.37 tolerated(0.06) probably_damaging(0.992) TCGA-FV-A2QR-01 6 33405455 33405455 G A SYNGAP1 Missense_Mutation p.R258H 0.40 deleterious(0.03) probably_damaging(0.994) TCGA-FV-A2QR-01 7 136701056 136701056 G T CHRM2 3'UTR 0.25 TCGA-FV-A2QR-01 7 150171348 150171348 A G GIMAP8 Missense_Mutation p.N311D 0.25 tolerated(1) benign(0.004) TCGA-FV-A2QR-01 7 20438493 20438493 C A ITGB8 Nonsense_Mutation p.S386* 0.37 TCGA-FV-A2QR-01 7 27285622 27285622 G C EVX1 Missense_Mutation p.G268R 0.50 tolerated(0.1) benign(0.229) TCGA-FV-A2QR-01 7 44555505 44555505 C T NPC1L1 Silent p.K1258K 0.44 TCGA-FV-A2QR-01 7 6026652 6026652 C G PMS2 Missense_Mutation p.E582Q 0.47 deleterious(0.04) possibly_damaging(0.756) TCGA-FV-A2QR-01 7 64639786 64639786 C T INTS4L1 RNA 0.24 TCGA-FV-A2QR-01 7 66660199 66660199 A T TYW1 Missense_Mutation p.M618L 0.34 deleterious(0.03) benign(0.02) TCGA-FV-A2QR-01 7 83590840 83590840 G T SEMA3A Missense_Mutation p.F721L 0.19 tolerated(0.1) benign(0.022) TCGA-FV-A2QR-01 8 119452108 119452108 C G SAMD12 Missense_Mutation p.Q95H 0.41 tolerated(0.15) probably_damaging(0.995) TCGA-FV-A2QR-01 8 123964092 123964092 A T ZHX2 Missense_Mutation p.E114D 0.28 tolerated(0.3) probably_damaging(0.984) TCGA-FV-A2QR-01 8 135545117 135545124 CACGTTGG - ZFAT Frame_Shift_Del p.A1023Gfs*33 0.25 TCGA-FV-A2QR-01 8 145659589 145659589 G A TONSL Silent p.A1053A 0.10 TCGA-FV-A2QR-01 8 17132309 17132309 C A VPS37A Missense_Mutation p.P162T 0.55 deleterious(0.04) benign(0.003) TCGA-FV-A2QR-01 8 28575571 28575571 G T EXTL3 Silent p.V665V 0.57 TCGA-FV-A2QR-01 8 42022975 42022975 C T AP3M2 Missense_Mutation p.H234Y 0.42 deleterious(0) probably_damaging(1) TCGA-FV-A2QR-01 8 42939883 42939883 T C FNTA Silent p.Y292Y 0.06 TCGA-FV-A2QR-01 8 77616371 77616371 G A ZFHX4 Silent p.Q16Q 0.42 TCGA-FV-A2QR-01 9 117015214 117015214 T A COL27A1 Splice_Site p.X1047_splice 0.35 TCGA-FV-A2QR-01 9 140147365 140147365 G A C9orf173 Silent p.S248S 0.51 TCGA-FV-A2QR-01 9 19116605 19116605 G C PLIN2 Missense_Mutation p.Q319E 0.45 deleterious(0.01) possibly_damaging(0.718) TCGA-FV-A2QR-01 9 20414041 20414041 T C MLLT3 Missense_Mutation p.N268S 0.39 tolerated(0.84) benign(0) TCGA-FV-A2QR-01 9 21350645 21350645 T G IFNA6 Missense_Mutation p.H81P 0.46 deleterious(0) probably_damaging(0.994) TCGA-FV-A2QR-01 9 98278803 98278803 C T RP11-435O5.4 3'Flank 0.43 TCGA-FV-A2QR-01 X 119243102 119243102 A G RHOXF1 3'UTR 0.27 TCGA-FV-A2QR-01 X 134155960 134155960 G T FAM127C 3'UTR 0.56 TCGA-FV-A3I0-01 10 123325033 123325033 G A FGFR2 Missense_Mutation p.P99S 0.57 tolerated(0.39) benign(0.004) TCGA-FV-A3I0-01 10 123843951 123843951 G T TACC2 Missense_Mutation p.G646W 0.54 probably_damaging(0.937) TCGA-FV-A3I0-01 10 135084292 135084292 C T ADAM8 Missense_Mutation p.E528K 0.14 deleterious(0.02) benign(0.23) TCGA-FV-A3I0-01 10 37506693 37506693 T C ANKRD30A Silent p.L996L 0.22 TCGA-FV-A3I0-01 10 69797855 69797855 G C HERC4 Missense_Mutation p.S153C 0.21 deleterious(0) possibly_damaging(0.764) TCGA-FV-A3I0-01 10 98741247 98741247 T C C10orf12 Missense_Mutation p.F34L 0.05 tolerated(0.22) benign(0.019) TCGA-FV-A3I0-01 11 1277989 1277989 G A MUC5B Missense_Mutation p.V5409M 0.31 unknown(0) TCGA-FV-A3I0-01 11 18127543 18127543 C G SAAL1 Missense_Mutation p.E16Q 0.33 tolerated(0.26) benign(0.068) TCGA-FV-A3I0-01 11 18333521 18333521 T C HPS5 Silent p.G53G 0.22 TCGA-FV-A3I0-01 11 22399124 22399124 G T SLC17A6 Silent p.G529G 0.29 TCGA-FV-A3I0-01 11 4076832 4076832 C A STIM1 Missense_Mutation p.F154L 0.14 deleterious(0.01) possibly_damaging(0.488) TCGA-FV-A3I0-01 11 43283803 43283803 G C HNRNPKP3 RNA 0.29 TCGA-FV-A3I0-01 11 45832329 45832329 G A SLC35C1 Missense_Mutation p.G180S 0.29 deleterious(0) probably_damaging(1) TCGA-FV-A3I0-01 11 4904015 4904015 T C OR51T1 Silent p.L323L 0.05 TCGA-FV-A3I0-01 11 6422643 6422643 C G APBB1 Missense_Mutation p.R505P 0.41 deleterious(0) probably_damaging(0.946) TCGA-FV-A3I0-01 11 67925241 67925241 A C SUV420H1 Missense_Mutation p.L858V 0.56 deleterious(0) probably_damaging(0.998) TCGA-FV-A3I0-01 11 6942827 6942827 G T OR2D3 Missense_Mutation p.A199S 0.51 deleterious(0.04) benign(0.383) TCGA-FV-A3I0-01 12 101736252 101736253 - AC UTP20 Frame_Shift_Ins p.Q1378Hfs*5 0.30 TCGA-FV-A3I0-01 12 130827612 130827612 G C PIWIL1 Missense_Mutation p.Q52H 0.17 tolerated(0.07) possibly_damaging(0.796) TCGA-FV-A3I0-01 12 22199469 22199479 GCGGCCCTGGA - CMAS Frame_Shift_Del p.A78Ffs*14 0.49 TCGA-FV-A3I0-01 12 53607025 53607025 G A RARG Missense_Mutation p.R341C 0.53 deleterious(0) probably_damaging(1) TCGA-FV-A3I0-01 14 102510668 102510668 G T DYNC1H1 Missense_Mutation p.A4248S 0.14 benign(0.015) TCGA-FV-A3I0-01 14 56079097 56079097 G T KTN1 Missense_Mutation p.V111F 0.32 deleterious(0) possibly_damaging(0.462) TCGA-FV-A3I0-01 14 93118817 93118817 C T RIN3 Missense_Mutation p.P475S 0.81 tolerated(0.2) benign(0.113) TCGA-FV-A3I0-01 15 22382912 22382912 C T OR4N4 Missense_Mutation p.A147V 0.07 tolerated(0.12) benign(0.068) TCGA-FV-A3I0-01 15 64698610 64698610 A G TRIP4 Missense_Mutation p.E260G 0.21 deleterious(0) probably_damaging(0.946) TCGA-FV-A3I0-01 15 90328301 90328301 G C ANPEP 3'UTR 0.50 TCGA-FV-A3I0-01 16 29113397 29113397 C T RRN3P2 RNA 0.18 TCGA-FV-A3I0-01 16 31045531 31045531 C T STX4 Intron 0.55 TCGA-FV-A3I0-01 16 3613089 3613089 C T NLRC3 Missense_Mutation p.E664K 0.67 deleterious(0) possibly_damaging(0.578) TCGA-FV-A3I0-01 16 4016936 4016936 G A ADCY9 Missense_Mutation p.P968S 0.07 tolerated(0.83) benign(0.001) TCGA-FV-A3I0-01 16 48595690 48595690 A T N4BP1 Silent p.S288S 0.65 TCGA-FV-A3I0-01 16 56692645 56692645 C T MT1F Silent p.C29C 0.62 TCGA-FV-A3I0-01 16 568966 568966 A G RAB11FIP3 Missense_Mutation p.N555S 0.08 deleterious(0.01) possibly_damaging(0.766) TCGA-FV-A3I0-01 16 57832189 57832189 G C KIFC3 5'UTR 0.33 TCGA-FV-A3I0-01 16 66966059 66966059 C T FAM96B 3'UTR 0.53 TCGA-FV-A3I0-01 17 46804132 46804132 C T HOXB13 3'UTR 0.35 TCGA-FV-A3I0-01 17 7755291 7755291 C T KDM6B Silent p.F1396F 0.16 TCGA-FV-A3I0-01 17 79203158 79203158 G C ENTHD2 Missense_Mutation p.P383R 0.40 deleterious(0) probably_damaging(1) TCGA-FV-A3I0-01 19 10657547 10657547 C T ATG4D Missense_Mutation p.P176S 0.23 tolerated(0.41) benign(0.016) TCGA-FV-A3I0-01 19 18092829 18092829 G A KCNN1 Silent p.T270T 0.16 TCGA-FV-A3I0-01 19 42820695 42820695 G A TMEM145 Missense_Mutation p.E237K 0.11 tolerated(0.75) benign(0.12) TCGA-FV-A3I0-01 19 50331706 50331706 G T MED25 Missense_Mutation p.K102N 0.52 deleterious(0.03) benign(0.175) TCGA-FV-A3I0-01 19 52570784 52570784 C A ZNF841 Missense_Mutation p.M117I 0.14 tolerated(0.25) benign(0.005) TCGA-FV-A3I0-01 19 53014990 53014990 G T ZNF578 Missense_Mutation p.E452D 0.32 deleterious(0.02) benign(0.167) TCGA-FV-A3I0-01 19 55918294 55918294 G A UBE2S Missense_Mutation p.R14C 0.16 deleterious(0) probably_damaging(0.984) TCGA-FV-A3I0-01 19 57646911 57646911 G C ZIM3 Missense_Mutation p.S265C 0.14 tolerated(0.13) benign(0.002) TCGA-FV-A3I0-01 19 58187569 58187569 G A ZSCAN4 Missense_Mutation p.G19E 0.55 tolerated(0.57) benign(0.008) TCGA-FV-A3I0-01 19 58199625 58199625 A G ZNF551 Missense_Mutation p.H661R 0.19 deleterious(0) probably_damaging(0.984) TCGA-FV-A3I0-01 19 9677428 9677428 A G ZNF121 Missense_Mutation p.C121R 0.57 deleterious(0.02) possibly_damaging(0.823) TCGA-FV-A3I0-01 1 113471853 113471853 A G SLC16A1 Silent p.A26A 0.16 TCGA-FV-A3I0-01 1 114443785 114443785 A T AP4B1 Intron 0.66 TCGA-FV-A3I0-01 1 152327575 152327575 C T FLG2 Missense_Mutation p.G896D 0.17 unknown(0) TCGA-FV-A3I0-01 1 153430321 153430321 C A S100A7 Missense_Mutation p.Q89H 0.18 tolerated(0.2) benign(0.005) TCGA-FV-A3I0-01 1 157069139 157069139 G A ETV3L Silent p.A30A 0.17 TCGA-FV-A3I0-01 1 167096333 167096333 G C DUSP27 Silent p.G655G 0.19 TCGA-FV-A3I0-01 1 215932017 215932017 G C USH2A Nonsense_Mutation p.S3770* 0.14 TCGA-FV-A3I0-01 1 216495239 216495239 T C USH2A Missense_Mutation p.T544A 0.75 probably_damaging(0.951) TCGA-FV-A3I0-01 1 24078281 24078281 A G TCEB3 Missense_Mutation p.M422V 0.71 tolerated(0.74) benign(0) TCGA-FV-A3I0-01 20 1106148 1106148 C T PSMF1 Missense_Mutation p.P46L 0.38 deleterious(0.02) benign(0.026) TCGA-FV-A3I0-01 21 15858388 15858388 C A SAMSN1 Missense_Mutation p.D391Y 0.26 deleterious(0) possibly_damaging(0.583) TCGA-FV-A3I0-01 21 41137531 41137531 G T IGSF5 Missense_Mutation p.R57L 0.35 deleterious(0) probably_damaging(0.975) TCGA-FV-A3I0-01 2 105885897 105885897 G A TGFBRAP1 Silent p.T746T 0.39 TCGA-FV-A3I0-01 2 108487292 108487292 T C RGPD4 Silent p.D944D 0.17 TCGA-FV-A3I0-01 2 174231134 174231134 G A CDCA7 Missense_Mutation p.E387K 0.30 deleterious(0) possibly_damaging(0.852) TCGA-FV-A3I0-01 2 17877588 17877588 G A SMC6 Nonsense_Mutation p.R834* 0.17 TCGA-FV-A3I0-01 2 27156166 27156166 C T DPYSL5 Missense_Mutation p.S252L 0.48 deleterious(0.03) benign(0.005) TCGA-FV-A3I0-01 2 28825786 28825786 C T PLB1 Silent p.A924A 0.35 TCGA-FV-A3I0-01 2 43458154 43458154 A C THADA Missense_Mutation p.L1932R 0.48 tolerated_low_confidence(0.05) benign(0.259) TCGA-FV-A3I0-01 2 71043685 71043685 A G CLEC4F Silent p.N276N 0.53 TCGA-FV-A3I0-01 2 71892431 71892431 A G DYSF Missense_Mutation p.I1772V 0.55 tolerated(0.05) benign(0.001) TCGA-FV-A3I0-01 2 75113781 75113781 C T HK2 Missense_Mutation p.L734F 0.53 deleterious(0.01) possibly_damaging(0.844) TCGA-FV-A3I0-01 2 96874004 96874004 G A STARD7 Missense_Mutation p.L57F 0.19 deleterious(0.01) probably_damaging(0.974) TCGA-FV-A3I0-01 3 133654650 133654650 G A SLCO2A1 Silent p.C594C 0.28 TCGA-FV-A3I0-01 3 196089289 196089289 C T UBXN7 Silent p.E368E 0.56 TCGA-FV-A3I0-01 3 52584506 52584506 A G PBRM1 Missense_Mutation p.Y1503H 0.79 deleterious(0) probably_damaging(0.994) TCGA-FV-A3I0-01 3 99643072 99643072 A G FILIP1L Splice_Site p.X202_splice 0.19 TCGA-FV-A3I0-01 4 1235166 1235166 A T CTBP1 Intron 0.72 TCGA-FV-A3I0-01 4 153896719 153896719 G A FHDC1 Missense_Mutation p.S759N 0.23 tolerated(0.11) possibly_damaging(0.467) TCGA-FV-A3I0-01 4 156784657 156784657 T A ASIC5 Missense_Mutation p.E97V 0.18 tolerated(0.37) benign(0.014) TCGA-FV-A3I0-01 4 17579110 17579110 G A LAP3 Missense_Mutation p.A8T 0.17 tolerated_low_confidence(0.13) probably_damaging(0.989) TCGA-FV-A3I0-01 4 3224125 3224125 C T HTT Missense_Mutation p.R2461C 0.36 probably_damaging(0.999) TCGA-FV-A3I0-01 4 6642727 6642727 C T MRFAP1 Silent p.H46H 0.76 TCGA-FV-A3I0-01 4 79366872 79366872 G C FRAS1 Intron 0.15 TCGA-FV-A3I0-01 5 178050338 178050338 T C CLK4 Missense_Mutation p.H27R 0.56 tolerated_low_confidence(0.3) benign(0.002) TCGA-FV-A3I0-01 5 40777637 40777637 C T PRKAA1 Missense_Mutation p.R60Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-FV-A3I0-01 6 109315748 109315748 C A SESN1 Missense_Mutation p.R346L 0.29 deleterious(0.02) probably_damaging(0.94) TCGA-FV-A3I0-01 6 43226802 43226802 G C TTBK1 Missense_Mutation p.G348A 0.09 probably_damaging(0.999) TCGA-FV-A3I0-01 6 43406411 43406411 G A ABCC10 Missense_Mutation p.A669T 0.17 tolerated(0.06) probably_damaging(0.957) TCGA-FV-A3I0-01 6 96986605 96986605 C T UFL1 Silent p.S359S 0.20 TCGA-FV-A3I0-01 7 134850410 134850410 C T TMEM140 3'UTR 0.16 TCGA-FV-A3I0-01 7 149152627 149152627 C G ZNF777 Missense_Mutation p.D163H 0.42 tolerated(0.07) benign(0.02) TCGA-FV-A3I0-01 7 21470288 21470288 G C SP4 Missense_Mutation p.S502T 0.55 deleterious(0.03) possibly_damaging(0.637) TCGA-FV-A3I0-01 7 2302995 2302995 G T SNX8 Missense_Mutation p.A262E 0.46 tolerated(0.11) benign(0.094) TCGA-FV-A3I0-01 7 24784360 24784360 C T DFNA5 Silent p.S75S 0.07 TCGA-FV-A3I0-01 7 33545255 33545255 T - BBS9 Frame_Shift_Del p.L766Wfs*15 0.19 TCGA-FV-A3I0-01 8 105361092 105361092 G T DCSTAMP Silent p.G104G 0.16 TCGA-FV-A3I0-01 8 110495324 110495324 T A PKHD1L1 Missense_Mutation p.V3189E 0.26 deleterious(0) probably_damaging(0.995) TCGA-FV-A3I0-01 8 124361670 124361670 G A ATAD2 Missense_Mutation p.T554I 0.53 deleterious(0) probably_damaging(0.999) TCGA-FV-A3I0-01 8 145540267 145540267 C T DGAT1 Missense_Mutation p.V473I 0.57 deleterious(0.04) possibly_damaging(0.802) TCGA-FV-A3I0-01 8 57213992 57213992 A T SDR16C5 3'UTR 0.43 TCGA-FV-A3I0-01 8 68658311 68658311 G T CPA6 Nonsense_Mutation p.C18* 0.37 TCGA-FV-A3I0-01 9 107547843 107547843 C G ABCA1 Missense_Mutation p.G2160A 0.11 tolerated(0.51) benign(0.017) TCGA-FV-A3I0-01 9 131028284 131028284 G A GOLGA2 Missense_Mutation p.H206Y 0.08 deleterious(0) benign(0.092) TCGA-FV-A3I0-01 9 13109010 13109010 T A MPDZ Missense_Mutation p.L1968F 0.53 deleterious(0.02) probably_damaging(1) TCGA-FV-A3I0-01 9 131696337 131696337 G A PHYHD1 Missense_Mutation p.A106T 0.10 deleterious(0.01) possibly_damaging(0.626) TCGA-FV-A3I0-01 9 139370175 139370175 C A SEC16A Silent p.V631V 0.73 TCGA-FV-A3I0-01 9 21335000 21335000 G A KLHL9 5'UTR 0.40 TCGA-FV-A3I0-01 9 21335001 21335001 C A KLHL9 5'UTR 0.40 TCGA-FV-A3I0-01 9 40772354 40772354 G T ZNF658 Missense_Mutation p.T974K 0.67 tolerated(0.18) benign(0.439) TCGA-FV-A3I0-01 9 96051838 96051838 A G WNK2 Missense_Mutation p.D1638G 0.47 unknown(0) TCGA-FV-A3I0-01 X 27765469 27765469 C T DCAF8L2 Missense_Mutation p.P153S 0.89 tolerated(0.67) benign(0.004) TCGA-FV-A3I1-01 10 103870721 103870721 T C LDB1 Missense_Mutation p.D86G 0.43 deleterious(0) possibly_damaging(0.492) TCGA-FV-A3I1-01 10 26414368 26414368 G T MYO3A Missense_Mutation p.A649S 0.27 deleterious(0) possibly_damaging(0.838) TCGA-FV-A3I1-01 10 85971460 85971460 T A CDHR1 Silent p.T514T 0.27 TCGA-FV-A3I1-01 10 91522476 91522476 A G KIF20B Missense_Mutation p.I1585V 0.24 deleterious(0) probably_damaging(0.995) TCGA-FV-A3I1-01 11 121440944 121440944 A G SORL1 Missense_Mutation p.N1101S 0.05 deleterious_low_confidence(0.01) benign(0.148) TCGA-FV-A3I1-01 11 18723581 18723581 T A TMEM86A 3'UTR 0.26 TCGA-FV-A3I1-01 11 3249346 3249346 G T MRGPRE Missense_Mutation p.F227L 0.41 tolerated(1) benign(0.048) TCGA-FV-A3I1-01 11 5717446 5717446 G A TRIM22 5'UTR 0.33 TCGA-FV-A3I1-01 11 63059095 63059095 A T SLC22A10 Silent p.I162I 0.29 TCGA-FV-A3I1-01 11 65482196 65482196 G T KAT5 Missense_Mutation p.K307N 0.31 deleterious(0.05) benign(0.258) TCGA-FV-A3I1-01 11 73431941 73431941 T C RAB6A Missense_Mutation p.T45A 0.26 deleterious(0) possibly_damaging(0.814) TCGA-FV-A3I1-01 12 117723945 117723945 C T NOS1 Silent p.S418S 0.27 TCGA-FV-A3I1-01 12 124414218 124414218 T C DNAH10 Missense_Mutation p.M4057T 0.35 benign(0.034) TCGA-FV-A3I1-01 12 13139868 13139868 T C HEBP1 Intron 0.38 TCGA-FV-A3I1-01 12 49427419 49427419 C A KMT2D Missense_Mutation p.G3690V 0.25 probably_damaging(0.997) TCGA-FV-A3I1-01 12 49427420 49427420 C T KMT2D Missense_Mutation p.G3690R 0.25 probably_damaging(0.998) TCGA-FV-A3I1-01 12 6443355 6443355 G T TNFRSF1A Missense_Mutation p.P32H 0.37 deleterious(0) probably_damaging(0.935) TCGA-FV-A3I1-01 12 99060130 99060130 C A APAF1 Missense_Mutation p.L453I 0.33 tolerated(0.25) benign(0.345) TCGA-FV-A3I1-01 13 52992155 52992155 T C VPS36 Missense_Mutation p.M293V 0.06 tolerated(0.24) benign(0.018) TCGA-FV-A3I1-01 13 97484795 97484795 C T HS6ST3 Silent p.S253S 0.30 TCGA-FV-A3I1-01 14 100789705 100789705 G A SLC25A47 5'UTR 0.29 TCGA-FV-A3I1-01 15 29398965 29398965 C T APBA2 Silent p.S620S 0.32 TCGA-FV-A3I1-01 15 42158099 42158099 C T SPTBN5 Silent p.E2275E 0.30 TCGA-FV-A3I1-01 15 50534990 50534990 G A HDC Missense_Mutation p.R486W 0.26 deleterious(0) benign(0.339) TCGA-FV-A3I1-01 17 39383348 39383348 G A KRTAP9-2 Missense_Mutation p.A148T 0.36 tolerated(0.51) probably_damaging(0.999) TCGA-FV-A3I1-01 17 7230299 7230299 C G NEURL4 Missense_Mutation p.V275L 0.21 tolerated(0.17) benign(0.001) TCGA-FV-A3I1-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.48 deleterious(0) probably_damaging(1) TCGA-FV-A3I1-01 17 80006463 80006463 G A RFNG 3'UTR 0.42 TCGA-FV-A3I1-01 17 80006467 80006467 G T RFNG 3'UTR 0.38 TCGA-FV-A3I1-01 19 14167259 14167259 C A PALM3 Missense_Mutation p.R112S 0.54 deleterious(0.02) benign(0.187) TCGA-FV-A3I1-01 19 49519808 49519808 G T LHB Missense_Mutation p.T60N 0.49 deleterious(0) possibly_damaging(0.815) TCGA-FV-A3I1-01 19 54417766 54417766 G T CACNG7 Missense_Mutation p.G70V 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-FV-A3I1-01 19 9453375 9453375 A C ZNF559 Missense_Mutation p.K416N 0.52 deleterious(0) probably_damaging(0.979) TCGA-FV-A3I1-01 1 156594411 156594411 A G HAPLN2 Missense_Mutation p.D192G 0.14 deleterious(0) probably_damaging(0.997) TCGA-FV-A3I1-01 1 171673636 171673636 T C VAMP4 3'UTR 0.23 TCGA-FV-A3I1-01 1 180062616 180062617 - T CEP350 Frame_Shift_Ins p.K2459Nfs*5 0.31 TCGA-FV-A3I1-01 1 201351823 201351823 C T LAD1 Silent p.L477L 0.31 TCGA-FV-A3I1-01 1 224444769 224444769 T C NVL Intron 0.26 TCGA-FV-A3I1-01 1 228487681 228487681 G T OBSCN Nonsense_Mutation p.E4525* 0.18 TCGA-FV-A3I1-01 1 34643282 34643282 C A C1orf94 5'UTR 0.59 TCGA-FV-A3I1-01 1 36923570 36923570 G C MRPS15 Missense_Mutation p.S133C 0.28 deleterious(0) possibly_damaging(0.907) TCGA-FV-A3I1-01 1 47609480 47609481 - T CYP4A22 Frame_Shift_Ins p.C230Lfs*9 0.25 TCGA-FV-A3I1-01 1 63974243 63974243 T C ITGB3BP Splice_Site p.X41_splice 0.32 TCGA-FV-A3I1-01 1 68944871 68944874 GTAA - DEPDC1 Frame_Shift_Del p.L689Rfs*11 0.32 TCGA-FV-A3I1-01 1 9188904 9188904 G A GPR157 Silent p.A61A 0.39 TCGA-FV-A3I1-01 1 98164998 98164998 G A DPYD Missense_Mutation p.P197S 0.31 deleterious(0) probably_damaging(1) TCGA-FV-A3I1-01 1 99771771 99771771 T C LPPR4 Silent p.N499N 0.39 TCGA-FV-A3I1-01 20 21142904 21142904 T A RP4-777D9.2 Intron 0.35 TCGA-FV-A3I1-01 20 2635458 2635458 A G NOP56 Missense_Mutation p.Q145R 0.37 deleterious(0.01) possibly_damaging(0.465) TCGA-FV-A3I1-01 20 60709443 60709443 C T LSM14B 3'UTR 0.31 TCGA-FV-A3I1-01 21 34400920 34400920 A C OLIG2 3'UTR 0.27 TCGA-FV-A3I1-01 2 10581663 10581663 T C ODC1 Missense_Mutation p.I405V 0.70 tolerated(0.43) benign(0.008) TCGA-FV-A3I1-01 2 137814010 137814010 G C THSD7B Missense_Mutation p.G54R 0.59 deleterious(0) probably_damaging(0.979) TCGA-FV-A3I1-01 2 198949734 198949734 C T PLCL1 Missense_Mutation p.P498L 0.73 tolerated(0.22) benign(0.002) TCGA-FV-A3I1-01 2 218925128 218925128 G A CXCR2P1 RNA 0.05 TCGA-FV-A3I1-01 3 107510138 107510138 C T BBX Missense_Mutation p.P782L 0.23 tolerated(0.13) possibly_damaging(0.632) TCGA-FV-A3I1-01 3 111393932 111393932 T C PLCXD2 5'UTR 0.33 TCGA-FV-A3I1-01 3 121838444 121838444 C T CD86 3'UTR 0.37 TCGA-FV-A3I1-01 3 128973580 128973580 C A COPG1 Silent p.I131I 0.23 TCGA-FV-A3I1-01 3 151017871 151017871 C A GPR87 Silent p.T6T 0.05 TCGA-FV-A3I1-01 3 173998534 173998534 C A NLGN1 Missense_Mutation p.P638H 0.27 deleterious(0.01) possibly_damaging(0.634) TCGA-FV-A3I1-01 3 47098921 47098921 G A SETD2 Missense_Mutation p.T2118I 0.25 deleterious(0) possibly_damaging(0.892) TCGA-FV-A3I1-01 3 57454649 57454649 T C snoU13 3'Flank 0.38 TCGA-FV-A3I1-01 3 78685014 78685014 A G ROBO1 Silent p.S1094S 0.33 TCGA-FV-A3I1-01 3 97868346 97868346 C A OR5H14 Silent p.I39I 0.34 TCGA-FV-A3I1-01 4 159956182 159956182 T C C4orf45 Intron 0.20 TCGA-FV-A3I1-01 4 183659598 183659598 T C TENM3 Missense_Mutation p.W1094R 0.32 deleterious(0.01) possibly_damaging(0.861) TCGA-FV-A3I1-01 4 76794280 76794280 C A PPEF2 Missense_Mutation p.K502N 0.21 deleterious(0) probably_damaging(0.999) TCGA-FV-A3I1-01 4 77816394 77816394 G C SOWAHB 3'UTR 0.38 TCGA-FV-A3I1-01 4 99850144 99850144 G C EIF4E Intron 0.12 TCGA-FV-A3I1-01 5 110456277 110456277 C A WDR36 Missense_Mutation p.T719N 0.25 deleterious(0.02) benign(0.045) TCGA-FV-A3I1-01 5 137219116 137219116 G T MYOT Missense_Mutation p.G287V 0.30 deleterious(0) probably_damaging(1) TCGA-FV-A3I1-01 5 139889380 139889380 T C ANKHD1 Silent p.C1308C 0.35 TCGA-FV-A3I1-01 5 139917173 139917173 A T ANKHD1 Silent p.S2409S 0.27 TCGA-FV-A3I1-01 5 140235699 140235699 C T PCDHA10 Silent p.A22A 0.68 TCGA-FV-A3I1-01 5 178310382 178310382 G C ZNF354B Missense_Mutation p.R310T 0.31 tolerated(0.46) probably_damaging(0.985) TCGA-FV-A3I1-01 5 68805338 68805338 A T OCLN Missense_Mutation p.M141L 0.35 tolerated(0.72) benign(0) TCGA-FV-A3I1-01 5 83680126 83680126 C T EDIL3 Missense_Mutation p.G23S 0.31 deleterious(0.01) benign(0.001) TCGA-FV-A3I1-01 6 10398750 10398750 G T TFAP2A Missense_Mutation p.A405D 0.39 deleterious(0) probably_damaging(0.993) TCGA-FV-A3I1-01 6 119345814 119345814 A C FAM184A Missense_Mutation p.I108M 0.32 tolerated(0.09) probably_damaging(0.967) TCGA-FV-A3I1-01 6 128222138 128222138 C A THEMIS 5'UTR 0.22 TCGA-FV-A3I1-01 6 147109747 147109747 G A ADGB Splice_Site p.X1513_splice 0.40 TCGA-FV-A3I1-01 6 161470524 161470524 T G MAP3K4 Nonsense_Mutation p.L407* 0.37 TCGA-FV-A3I1-01 6 31848859 31848859 C T EHMT2 Missense_Mutation p.E1070K 0.06 deleterious(0) probably_damaging(1) TCGA-FV-A3I1-01 6 33424110 33424110 T A ZBTB9 Missense_Mutation p.F411L 0.19 deleterious(0.01) probably_damaging(0.993) TCGA-FV-A3I1-01 6 349068 349068 G C DUSP22 Intron 0.21 TCGA-FV-A3I1-01 6 66044982 66044982 G T EYS Missense_Mutation p.L553I 0.37 tolerated(0.4) benign(0.001) TCGA-FV-A3I1-01 7 138764382 138764382 C A ZC3HAV1 Silent p.V435V 0.46 TCGA-FV-A3I1-01 7 143095957 143095957 G T EPHA1 Missense_Mutation p.T358K 0.48 tolerated(0.11) benign(0.007) TCGA-FV-A3I1-01 7 143095959 143095959 A T EPHA1 Missense_Mutation p.D357E 0.47 tolerated(0.06) probably_damaging(0.979) TCGA-FV-A3I1-01 7 24758722 24758722 T C DFNA5 Missense_Mutation p.M174V 0.54 tolerated(1) benign(0) TCGA-FV-A3I1-01 7 72469249 72469249 C T AC005488.1 3'Flank 0.39 TCGA-FV-A3I1-01 8 55539906 55539906 A G RP1 Missense_Mutation p.N1155S 0.24 tolerated(1) benign(0.007) TCGA-FV-A3I1-01 8 99045370 99045370 T C MATN2 Silent p.S894S 0.27 TCGA-FV-A3I1-01 9 128001549 128001549 A C HSPA5 Missense_Mutation p.F223V 0.53 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-FV-A3I1-01 9 37784995 37784995 C T EXOSC3 Missense_Mutation p.R16K 0.42 tolerated_low_confidence(0.49) benign(0.002) TCGA-FV-A3I1-01 9 86571114 86571114 G A C9orf64 Missense_Mutation p.S101F 0.42 deleterious(0) probably_damaging(0.941) TCGA-FV-A3I1-01 9 96415567 96415567 T G PHF2 Missense_Mutation p.C237G 0.41 deleterious(0) unknown(0) TCGA-FV-A3I1-01 X 101615541 101615541 G A NXF2B Missense_Mutation p.A621V 0.08 deleterious(0.04) possibly_damaging(0.708) TCGA-FV-A3I1-01 X 134156305 134156305 G A FAM127C Missense_Mutation p.A62V 0.34 tolerated(0.06) benign(0.09) TCGA-FV-A3I1-01 X 153136308 153136308 C A L1CAM Missense_Mutation p.A211S 0.33 deleterious(0.01) probably_damaging(1) TCGA-FV-A3I1-01 X 24229378 24229378 C A ZFX Missense_Mutation p.S768Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-FV-A3I1-01 X 3227926 3227926 G A MXRA5 Missense_Mutation p.S2773L 0.31 tolerated(0.05) benign(0.031) TCGA-FV-A3I1-01 X 34149524 34149524 G C FAM47A Missense_Mutation p.T291R 0.32 tolerated(0.37) possibly_damaging(0.702) TCGA-FV-A3I1-01 X 43655030 43655030 T A MAOB Nonsense_Mutation p.R242* 0.38 TCGA-FV-A3I1-01 X 63548663 63548663 G T MTMR8 Silent p.P490P 0.33 TCGA-FV-A3I1-01 X 71417258 71417258 C A PIN4 Missense_Mutation p.P118Q 0.31 tolerated(0.05) benign(0.333) TCGA-FV-A3R2-01 10 127697046 127697046 G T FANK1 Missense_Mutation p.R259M 0.38 deleterious(0.03) possibly_damaging(0.634) TCGA-FV-A3R2-01 10 88718402 88718411 CAGGGAGATC - SNCG 5'Flank 0.32 TCGA-FV-A3R2-01 11 111953465 111953465 A C C11orf57 Missense_Mutation p.K217N 0.32 tolerated_low_confidence(0.25) possibly_damaging(0.826) TCGA-FV-A3R2-01 11 123900948 123900948 T C OR10G8 Missense_Mutation p.S207P 0.43 deleterious(0.02) possibly_damaging(0.824) TCGA-FV-A3R2-01 11 124766856 124766856 G T ROBO4 Silent p.V124V 0.32 TCGA-FV-A3R2-01 11 126145999 126145999 A G FOXRED1 Missense_Mutation p.I286V 0.31 tolerated(0.27) benign(0.005) TCGA-FV-A3R2-01 11 27389536 27389536 C A LGR4 Nonsense_Mutation p.E912* 0.28 TCGA-FV-A3R2-01 11 299408 299408 G A IFITM5 Missense_Mutation p.A28V 0.45 deleterious(0.04) benign(0.185) TCGA-FV-A3R2-01 11 61502408 61502408 C A DAGLA Silent p.I354I 0.31 TCGA-FV-A3R2-01 12 101520844 101520844 C A ANO4 Missense_Mutation p.P920Q 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-FV-A3R2-01 12 118298110 118298110 T A KSR2 Nonsense_Mutation p.K103* 0.35 TCGA-FV-A3R2-01 12 3806151 3806151 G A EFCAB4B Silent p.D5D 0.21 TCGA-FV-A3R2-01 12 49176704 49176704 C A ADCY6 Missense_Mutation p.A172S 0.46 tolerated(0.51) benign(0.003) TCGA-FV-A3R2-01 12 49224057 49224057 C A DDX23 3'UTR 0.62 TCGA-FV-A3R2-01 12 54676893 54676893 C G HNRNPA1 Missense_Mutation p.S261C 0.43 tolerated(0.17) unknown(0) TCGA-FV-A3R2-01 14 47120791 47120791 C T RPL10L Missense_Mutation p.G50D 0.38 tolerated(0.16) benign(0.088) TCGA-FV-A3R2-01 14 74363143 74363143 G A ZNF410 Silent p.P115P 0.27 TCGA-FV-A3R2-01 14 77796672 77796672 G T GSTZ1 Missense_Mutation p.C165F 0.36 tolerated(0.08) possibly_damaging(0.453) TCGA-FV-A3R2-01 14 93720038 93720038 G T BTBD7 Silent p.I569I 0.37 TCGA-FV-A3R2-01 14 95942020 95942020 T C SYNE3 Missense_Mutation p.T47A 0.13 deleterious(0) probably_damaging(0.945) TCGA-FV-A3R2-01 15 44093878 44093878 G T HYPK Intron 0.37 TCGA-FV-A3R2-01 15 60740303 60740303 C T NARG2 Missense_Mutation p.E721K 0.39 deleterious(0) probably_damaging(0.957) TCGA-FV-A3R2-01 15 66729181 66729181 A G MAP2K1 Missense_Mutation p.Y130C 0.29 deleterious(0) probably_damaging(0.999) TCGA-FV-A3R2-01 15 78893648 78893648 G T CHRNA3 Missense_Mutation p.Q446K 0.38 tolerated(0.1) benign(0.048) TCGA-FV-A3R2-01 16 360070 360070 C A AXIN1 Splice_Site p.X340_splice 0.50 TCGA-FV-A3R2-01 17 1580416 1580416 A T PRPF8 Missense_Mutation p.S679T 0.35 tolerated(0.15) probably_damaging(0.926) TCGA-FV-A3R2-01 17 16703467 16703467 T C CCDC144A 3'UTR 0.36 TCGA-FV-A3R2-01 17 33884944 33884944 G T SLFN14 Silent p.I46I 0.40 TCGA-FV-A3R2-01 17 45015970 45015970 T G GOSR2 Silent p.T161T 0.33 TCGA-FV-A3R2-01 17 53027430 53027430 C T TOM1L1 Missense_Mutation p.P438L 0.05 tolerated(0.28) benign(0.002) TCGA-FV-A3R2-01 17 73840324 73840324 G A UNC13D Missense_Mutation p.P32L 0.45 tolerated(0.08) benign(0.03) TCGA-FV-A3R2-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.54 TCGA-FV-A3R2-01 17 7758491 7758491 C T TMEM88 Silent p.A33A 0.75 TCGA-FV-A3R2-01 17 7811224 7811224 G T CHD3 Missense_Mutation p.G1739V 0.61 benign(0.255) TCGA-FV-A3R2-01 17 79414623 79414623 A G RP11-1055B8.7 Missense_Mutation p.E1242G 0.09 benign(0.004) TCGA-FV-A3R2-01 17 7983975 7983975 C A ALOX12B Splice_Site p.X217_splice 0.66 TCGA-FV-A3R2-01 17 8243610 8243610 C T ODF4 Nonsense_Mutation p.Q81* 0.67 TCGA-FV-A3R2-01 18 14542851 14542851 C A POTEC Missense_Mutation p.G99C 0.34 deleterious_low_confidence(0.02) benign(0.212) TCGA-FV-A3R2-01 18 32418793 32418793 C A DTNA Intron 0.29 TCGA-FV-A3R2-01 18 52901914 52901914 C T TCF4 Missense_Mutation p.V553M 0.58 tolerated(0.06) possibly_damaging(0.887) TCGA-FV-A3R2-01 18 70417752 70417752 G A NETO1 Silent p.I362I 0.30 TCGA-FV-A3R2-01 19 11548763 11548763 C T PRKCSH Missense_Mutation p.P88L 0.35 tolerated(0.1) benign(0.026) TCGA-FV-A3R2-01 19 13387893 13387893 A G CACNA1A Missense_Mutation p.M1291T 0.27 benign(0.014) TCGA-FV-A3R2-01 19 34810943 34810943 C T KIAA0355 Silent p.G209G 0.45 TCGA-FV-A3R2-01 19 49527384 49527384 C A CGB 5'UTR 0.47 TCGA-FV-A3R2-01 19 50411919 50411919 C A NUP62 Silent p.V382V 0.39 TCGA-FV-A3R2-01 19 51169520 51169526 CCCACTG - SHANK1 Frame_Shift_Del p.S1898Efs*233 0.50 TCGA-FV-A3R2-01 19 9057255 9057255 G T MUC16 Missense_Mutation p.T10064K 0.47 benign(0.092) TCGA-FV-A3R2-01 1 10678434 10678434 T C PEX14 Missense_Mutation p.I115T 0.33 deleterious(0) probably_damaging(0.999) TCGA-FV-A3R2-01 1 151316341 151316341 T C RFX5 Silent p.E191E 0.05 TCGA-FV-A3R2-01 1 156024661 156024661 C T LAMTOR2 5'UTR 0.25 TCGA-FV-A3R2-01 1 200587131 200587131 G - KIF14 Frame_Shift_Del p.Q241Rfs*33 0.27 TCGA-FV-A3R2-01 1 202249945 202249945 C A LGR6 Silent p.T227T 0.35 TCGA-FV-A3R2-01 1 202914287 202914287 C A ADIPOR1 Silent p.L147L 0.37 TCGA-FV-A3R2-01 1 207642179 207642179 T A CR2 Missense_Mutation p.N223K 0.38 deleterious(0) probably_damaging(0.996) TCGA-FV-A3R2-01 1 210637852 210637852 G C HHAT Missense_Mutation p.G288A 0.34 deleterious(0) probably_damaging(0.974) TCGA-FV-A3R2-01 1 218520094 218520094 C T TGFB2 Silent p.V17V 0.06 TCGA-FV-A3R2-01 1 245912786 245912786 C G SMYD3 3'Flank 0.41 TCGA-FV-A3R2-01 1 248790035 248790035 A G OR2T11 Missense_Mutation p.L132P 0.46 deleterious(0) probably_damaging(0.999) TCGA-FV-A3R2-01 1 3328405 3328405 C T PRDM16 Silent p.P548P 0.11 TCGA-FV-A3R2-01 20 31481009 31481009 A G EFCAB8 Missense_Mutation p.Y263C 0.53 TCGA-FV-A3R2-01 20 31815433 31815433 A C BPIFA3 3'UTR 0.51 TCGA-FV-A3R2-01 21 30445937 30445937 G A CCT8 5'UTR 0.33 TCGA-FV-A3R2-01 22 21380718 21380718 C T P2RX6 Missense_Mutation p.P380S 0.35 tolerated(0.11) probably_damaging(0.957) TCGA-FV-A3R2-01 22 22160192 22160192 G A MAPK1 Missense_Mutation p.H147Y 0.35 deleterious(0) probably_damaging(1) TCGA-FV-A3R2-01 2 129025675 129025675 T C HS6ST1 3'UTR 0.18 TCGA-FV-A3R2-01 2 141660519 141660519 C A LRP1B Missense_Mutation p.D1246Y 0.39 possibly_damaging(0.861) TCGA-FV-A3R2-01 2 152695776 152695776 A T CACNB4 Missense_Mutation p.L474M 0.42 tolerated_low_confidence(0.23) benign(0.021) TCGA-FV-A3R2-01 2 198436936 198436936 G T RFTN2 Missense_Mutation p.D434E 0.36 tolerated(0.06) probably_damaging(0.922) TCGA-FV-A3R2-01 2 241463777 241463777 C T ANKMY1 Missense_Mutation p.V364I 0.30 tolerated(0.3) benign(0.001) TCGA-FV-A3R2-01 2 54853192 54853192 G A SPTBN1 Missense_Mutation p.E489K 0.38 deleterious(0.02) possibly_damaging(0.54) TCGA-FV-A3R2-01 2 86790593 86790593 C T CHMP3 Intron 0.46 TCGA-FV-A3R2-01 2 89521327 89521327 A G IGKV2-28 Missense_Mutation p.L71P 0.25 deleterious(0.03) benign(0.261) TCGA-FV-A3R2-01 3 102157387 102157387 C T ZPLD1 Missense_Mutation p.A35V 0.33 deleterious(0.02) benign(0.108) TCGA-FV-A3R2-01 3 14551403 14551403 A G GRIP2 RNA 0.09 TCGA-FV-A3R2-01 3 156260852 156260852 C T SSR3 3'UTR 0.34 TCGA-FV-A3R2-01 3 18462375 18462375 T G SATB1 Missense_Mutation p.K29Q 0.58 deleterious(0) probably_damaging(0.991) TCGA-FV-A3R2-01 3 192516790 192516790 C T MB21D2 Nonsense_Mutation p.W287* 0.60 TCGA-FV-A3R2-01 4 54373548 54373548 C G LNX1 Silent p.G237G 0.34 TCGA-FV-A3R2-01 4 69095161 69095161 G A TMPRSS11B Nonsense_Mutation p.Q254* 0.31 TCGA-FV-A3R2-01 4 76817508 76817508 A T PPEF2 5'UTR 0.32 TCGA-FV-A3R2-01 4 78806454 78806454 A G MRPL1 Silent p.P149P 0.42 TCGA-FV-A3R2-01 5 133494206 133494206 A C SKP1 Silent p.P132P 0.35 TCGA-FV-A3R2-01 5 138856001 138856001 C A TMEM173 Missense_Mutation p.V329F 0.18 deleterious(0) possibly_damaging(0.798) TCGA-FV-A3R2-01 5 145317471 145317471 G T SH3RF2 5'UTR 0.30 TCGA-FV-A3R2-01 5 146077624 146077624 C T PPP2R2B Silent p.K87K 0.29 TCGA-FV-A3R2-01 5 160033981 160033981 G T ATP10B Missense_Mutation p.S984Y 0.55 deleterious(0.01) possibly_damaging(0.815) TCGA-FV-A3R2-01 5 26889956 26889956 T C CDH9 Missense_Mutation p.K501E 0.34 tolerated(0.06) possibly_damaging(0.869) TCGA-FV-A3R2-01 5 71016537 71016537 A G CARTPT 3'UTR 0.25 TCGA-FV-A3R2-01 5 82836955 82836955 T A VCAN Silent p.A2711A 0.29 TCGA-FV-A3R2-01 6 110059526 110059526 A G FIG4 Splice_Site p.X216_splice 0.60 TCGA-FV-A3R2-01 6 24785914 24785914 G C GMNN Missense_Mutation p.E173Q 0.28 tolerated(0.13) probably_damaging(0.91) TCGA-FV-A3R2-01 6 29364910 29364910 C A OR12D2 Missense_Mutation p.T145K 0.27 deleterious(0.02) benign(0.392) TCGA-FV-A3R2-01 6 31778524 31778524 C T HSPA1L Missense_Mutation p.G409E 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-FV-A3R2-01 6 33690707 33690707 G A IP6K3 Silent p.G341G 0.25 TCGA-FV-A3R2-01 7 113519285 113519285 C T PPP1R3A Missense_Mutation p.R621K 0.52 tolerated(0.17) benign(0.01) TCGA-FV-A3R2-01 7 116955172 116955172 C T WNT2 Missense_Mutation p.D181N 0.26 deleterious(0.03) probably_damaging(0.998) TCGA-FV-A3R2-01 7 150644109 150644109 A T KCNH2 Silent p.T1062T 0.28 TCGA-FV-A3R2-01 7 34118587 34118587 G T BMPER Silent p.S399S 0.27 TCGA-FV-A3R2-01 7 66463919 66463919 G T TYW1 Missense_Mutation p.G84V 0.26 deleterious(0.03) probably_damaging(0.992) TCGA-FV-A3R2-01 8 108334350 108334350 T A ANGPT1 Missense_Mutation p.L194F 0.21 deleterious(0) possibly_damaging(0.626) TCGA-FV-A3R2-01 8 125072474 125072474 C G FER1L6 Silent p.T976T 0.19 TCGA-FV-A3R2-01 8 75761417 75761417 T A PI15 Missense_Mutation p.Y236N 0.25 deleterious(0) probably_damaging(0.996) TCGA-FV-A3R2-01 9 116731402 116731402 C T ZNF618 Silent p.D13D 0.82 TCGA-FV-A3R2-01 9 135786464 135786464 T - TSC1 Frame_Shift_Del p.T356Pfs*84 0.34 TCGA-FV-A3R2-01 9 18777712 18777712 G A ADAMTSL1 Missense_Mutation p.R1162H 0.14 deleterious(0) possibly_damaging(0.792) TCGA-FV-A3R2-01 9 3898836 3898836 C G GLIS3 Splice_Site p.X662_splice 0.25 TCGA-FV-A3R2-01 9 90342998 90342998 G A CTSL Silent p.L61L 0.57 TCGA-FV-A3R2-01 X 109695878 109695878 C T RGAG1 Missense_Mutation p.A678V 0.80 tolerated(0.37) benign(0.023) TCGA-FV-A3R2-01 X 130219933 130219933 G T ARHGAP36 Missense_Mutation p.G384V 0.76 deleterious(0) probably_damaging(1) TCGA-FV-A3R2-01 X 135318411 135318411 T C MAP7D3 Missense_Mutation p.K243R 0.08 tolerated(0.1) benign(0.149) TCGA-FV-A3R2-01 X 153628235 153628235 C A RPL10 Missense_Mutation p.F94L 0.82 deleterious(0.03) benign(0.147) TCGA-FV-A3R2-01 X 154007594 154007594 T C MPP1 Missense_Mutation p.E420G 0.78 tolerated(0.16) benign(0.03) TCGA-FV-A3R2-01 X 19413202 19413202 C T MAP3K15 Missense_Mutation p.G731R 0.87 deleterious(0) probably_damaging(0.999) TCGA-FV-A3R2-01 X 75649863 75649863 G T MAGEE1 Nonsense_Mutation p.E514* 0.75 TCGA-FV-A3R2-01 Y 14968376 14968376 G A USP9Y Missense_Mutation p.M2392I 0.81 tolerated(0.09) benign(0.235) TCGA-FV-A3R2-01 Y 14968377 14968377 G T USP9Y Missense_Mutation p.V2393L 0.81 deleterious(0.01) probably_damaging(0.995) TCGA-FV-A3R3-01 10 103988605 103988605 C T ELOVL3 Missense_Mutation p.R137C 0.17 deleterious(0.01) probably_damaging(0.986) TCGA-FV-A3R3-01 12 107486610 107486610 A G CRY1 Missense_Mutation p.S44P 0.07 tolerated(0.06) possibly_damaging(0.799) TCGA-FV-A3R3-01 12 125455935 125455935 C G DHX37 Silent p.V368V 0.15 TCGA-FV-A3R3-01 12 52712959 52712959 G T KRT83 Missense_Mutation p.L192M 0.26 tolerated(0.12) benign(0.317) TCGA-FV-A3R3-01 12 56720646 56720646 T C PAN2 Silent p.S339S 0.08 TCGA-FV-A3R3-01 12 80862537 80862537 A T PTPRQ Missense_Mutation p.K316M 0.16 deleterious(0.01) possibly_damaging(0.873) TCGA-FV-A3R3-01 13 100206607 100206607 A G TM9SF2 Missense_Mutation p.E513G 0.17 deleterious(0.01) benign(0.232) TCGA-FV-A3R3-01 13 52972291 52972300 CTGGCTCTCT - THSD1 Frame_Shift_Del p.R30Afs*3 0.18 TCGA-FV-A3R3-01 14 23502649 23502649 T C PSMB5 Missense_Mutation p.M145V 0.09 tolerated(0.1) benign(0.272) TCGA-FV-A3R3-01 14 24775280 24775280 A G CIDEB Missense_Mutation p.F134L 0.08 tolerated(0.17) benign(0) TCGA-FV-A3R3-01 14 35231121 35231121 T C BAZ1A Missense_Mutation p.K1362R 0.11 tolerated_low_confidence(0.31) benign(0.004) TCGA-FV-A3R3-01 14 74422552 74422552 T G COQ6 Missense_Mutation p.D134E 0.19 tolerated(0.24) benign(0.007) TCGA-FV-A3R3-01 15 62182512 62182512 T C VPS13C Missense_Mutation p.T3065A 0.22 deleterious(0) probably_damaging(0.931) TCGA-FV-A3R3-01 15 65962395 65962395 T A DENND4A Missense_Mutation p.L1531F 0.09 deleterious(0) benign(0.234) TCGA-FV-A3R3-01 15 73016989 73016989 G A BBS4 Missense_Mutation p.A194T 0.05 deleterious(0.03) possibly_damaging(0.764) TCGA-FV-A3R3-01 15 83451591 83451591 T C FSD2 Missense_Mutation p.T308A 0.11 deleterious(0.04) benign(0.117) TCGA-FV-A3R3-01 15 86265519 86265519 T G AKAP13 Missense_Mutation p.V2150G 0.11 deleterious(0) probably_damaging(0.952) TCGA-FV-A3R3-01 16 2029505 2029505 G A NOXO1 Missense_Mutation p.R252C 0.15 deleterious(0.04) benign(0.091) TCGA-FV-A3R3-01 16 24902218 24902218 A G SLC5A11 Silent p.G231G 0.18 TCGA-FV-A3R3-01 17 7400976 7400976 A T POLR2A Missense_Mutation p.Q330L 0.26 possibly_damaging(0.819) TCGA-FV-A3R3-01 18 21140425 21140425 C T NPC1 Missense_Mutation p.M217I 0.06 tolerated(0.39) benign(0.01) TCGA-FV-A3R3-01 19 1434862 1434862 G A DAZAP1 Missense_Mutation p.G392E 0.41 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-FV-A3R3-01 19 36109582 36109582 G T HAUS5 Missense_Mutation p.V333F 0.09 tolerated(0.34) benign(0.105) TCGA-FV-A3R3-01 19 38028241 38028241 C T ZNF793 Silent p.H227H 0.20 TCGA-FV-A3R3-01 19 38189048 38189048 T A ZNF607 Missense_Mutation p.I662L 0.17 tolerated(0.74) benign(0.01) TCGA-FV-A3R3-01 19 49090570 49090570 G A SULT2B1 Missense_Mutation p.R100Q 0.16 deleterious(0.01) probably_damaging(1) TCGA-FV-A3R3-01 19 53885992 53885992 G T ZNF525 3'UTR 0.11 TCGA-FV-A3R3-01 19 9060181 9060181 T G MUC16 Missense_Mutation p.T9089P 0.13 unknown(0) TCGA-FV-A3R3-01 1 11584041 11584041 G C PTCHD2 Missense_Mutation p.R802P 0.07 tolerated_low_confidence(0.12) probably_damaging(0.998) TCGA-FV-A3R3-01 1 13742998 13742998 C T PRAMEF20 Missense_Mutation p.R63C 0.05 tolerated(0.08) benign(0.023) TCGA-FV-A3R3-01 1 201938792 201938792 A G TIMM17A 3'UTR 0.11 TCGA-FV-A3R3-01 1 211848801 211848801 G T NEK2 Missense_Mutation p.D7E 0.14 deleterious(0.01) benign(0.069) TCGA-FV-A3R3-01 1 240371393 240371393 C A FMN2 Missense_Mutation p.A1094E 0.31 unknown(0) TCGA-FV-A3R3-01 20 34761813 34761813 C A EPB41L1 Silent p.G38G 0.24 TCGA-FV-A3R3-01 20 37621023 37621023 C T DHX35 Silent p.H179H 0.09 TCGA-FV-A3R3-01 20 56139383 56139383 G A PCK1 Missense_Mutation p.D374N 0.17 tolerated(0.05) benign(0.02) TCGA-FV-A3R3-01 20 56139386 56139386 G A PCK1 Missense_Mutation p.E375K 0.17 tolerated(0.45) benign(0.001) TCGA-FV-A3R3-01 20 57484420 57484420 C T GNAS Missense_Mutation p.R844C 0.29 deleterious(0.01) probably_damaging(1) TCGA-FV-A3R3-01 20 61511712 61511712 C T DIDO1 Missense_Mutation p.A1866T 0.18 benign(0.007) TCGA-FV-A3R3-01 22 36737554 36737554 G A MYH9 Silent p.F117F 0.06 TCGA-FV-A3R3-01 2 121747077 121747077 G A GLI2 Missense_Mutation p.G1196E 0.26 tolerated(0.1) possibly_damaging(0.546) TCGA-FV-A3R3-01 2 38178436 38178436 C T RMDN2 Silent p.D26D 0.09 TCGA-FV-A3R3-01 2 89065665 89065665 A G AC096579.1 5'Flank 0.34 TCGA-FV-A3R3-01 2 97218071 97218071 A G ARID5A 3'UTR 0.20 TCGA-FV-A3R3-01 3 160141354 160141354 T G SMC4 Missense_Mutation p.L721V 0.24 deleterious(0) probably_damaging(0.919) TCGA-FV-A3R3-01 3 195513066 195513066 G T MUC4 Silent p.V1795V 0.12 TCGA-FV-A3R3-01 3 425546 425546 A G CHL1 Missense_Mutation p.K742E 0.10 deleterious(0.04) benign(0.281) TCGA-FV-A3R3-01 3 44487981 44487981 T G ZNF445 3'UTR 0.11 TCGA-FV-A3R3-01 3 47452056 47452056 C T PTPN23 Missense_Mutation p.T923I 0.30 unknown(0) TCGA-FV-A3R3-01 4 141313503 141313503 T C CLGN Silent p.K507K 0.04 TCGA-FV-A3R3-01 4 158254023 158254023 G A GRIA2 Missense_Mutation p.R312H 0.12 deleterious(0.04) benign(0.003) TCGA-FV-A3R3-01 4 17711023 17711023 G A FAM184B Missense_Mutation p.T129M 0.06 deleterious(0.02) possibly_damaging(0.8) TCGA-FV-A3R3-01 4 36296584 36296584 C T DTHD1 Silent p.N397N 0.24 TCGA-FV-A3R3-01 4 73923971 73923971 C A COX18 Missense_Mutation p.V288L 0.29 tolerated(0.21) benign(0.003) TCGA-FV-A3R3-01 4 86643102 86643102 A T ARHGAP24 Missense_Mutation p.K82M 0.13 deleterious(0.02) benign(0.025) TCGA-FV-A3R3-01 5 140736620 140736620 C T PCDHGA4 Missense_Mutation p.A618V 0.11 tolerated_low_confidence(0.25) benign(0.013) TCGA-FV-A3R3-01 5 38482266 38482266 C A LIFR Nonsense_Mutation p.E909* 0.15 TCGA-FV-A3R3-01 5 58511685 58511685 C A PDE4D Nonsense_Mutation p.E189* 0.34 TCGA-FV-A3R3-01 6 148835544 148835544 A G SASH1 Missense_Mutation p.R272G 0.11 deleterious_low_confidence(0) possibly_damaging(0.584) TCGA-FV-A3R3-01 6 55620459 55620459 G C BMP5 Missense_Mutation p.H413D 0.07 tolerated(0.19) benign(0.011) TCGA-FV-A3R3-01 6 96653035 96653035 T C FUT9 3'UTR 0.07 TCGA-FV-A3R3-01 7 72419550 72419550 C T POM121 3'UTR 0.06 TCGA-FV-A3R3-01 7 75045350 75045350 G A POM121C 3'Flank 0.35 TCGA-FV-A3R3-01 8 80942420 80942420 A G MRPS28 Missense_Mutation p.F22L 0.09 tolerated_low_confidence(0.29) benign(0.008) TCGA-FV-A3R3-01 8 81412242 81412243 - A ZBTB10 Frame_Shift_Ins p.I498Nfs*16 0.24 TCGA-FV-A3R3-01 9 114462240 114462240 A G C9orf84 Silent p.D995D 0.24 TCGA-FV-A3R3-01 9 117122236 117122236 A - AKNA Frame_Shift_Del p.L744Rfs*25 0.15 TCGA-FV-A3R3-01 9 132502105 132502105 A T PTGES Missense_Mutation p.F82I 0.15 deleterious(0) probably_damaging(1) TCGA-FV-A3R3-01 9 137326002 137326002 A G RXRA Missense_Mutation p.Y397C 0.29 deleterious(0) probably_damaging(1) TCGA-FV-A3R3-01 9 138441811 138441811 C T OBP2A 3'Flank 0.20 TCGA-FV-A3R3-01 9 74667237 74667237 C A C9orf57 Missense_Mutation p.C154F 0.16 deleterious(0) probably_damaging(0.919) TCGA-FV-A3R3-01 X 107084301 107084301 C T MID2 Nonsense_Mutation p.R136* 0.14 TCGA-FV-A3R3-01 X 109444278 109444278 C T AMMECR1 Missense_Mutation p.G264E 0.13 tolerated(0.09) possibly_damaging(0.836) TCGA-FV-A3R3-01 X 51149824 51149824 G T CXorf67 5'UTR 0.24 TCGA-FV-A3R3-01 X 54785172 54785172 G A ITIH6 Silent p.N445N 0.30 TCGA-FV-A3R3-01 X 57936066 57936066 G A ZXDA Silent p.G263G 0.30 TCGA-FV-A3R3-01 X 99839924 99839924 G A TNMD 5'UTR 0.11 TCGA-FV-A495-01 10 56129002 56129002 C G PCDH15 Missense_Mutation p.V118L 0.29 tolerated(0.24) possibly_damaging(0.474) TCGA-FV-A495-01 10 95161196 95161196 G A MYOF Nonsense_Mutation p.R366* 0.29 TCGA-FV-A495-01 10 96084287 96084287 C A PLCE1 Missense_Mutation p.A2228E 0.41 tolerated(0.11) probably_damaging(0.991) TCGA-FV-A495-01 11 1266818 1266818 C T MUC5B Missense_Mutation p.A2903V 0.56 unknown(0) TCGA-FV-A495-01 11 251919 251919 G C PSMD13 Missense_Mutation p.V342L 0.05 deleterious(0.04) possibly_damaging(0.654) TCGA-FV-A495-01 11 61277683 61277683 G T LRRC10B 3'UTR 0.11 TCGA-FV-A495-01 11 66103889 66103889 C T RIN1 5'UTR 0.07 TCGA-FV-A495-01 11 6655134 6655134 T C DCHS1 Missense_Mutation p.T702A 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-FV-A495-01 11 70049591 70049591 A G FADD Missense_Mutation p.H9R 0.16 deleterious(0) benign(0.378) TCGA-FV-A495-01 11 71806552 71806552 C A LRTOMT Intron 0.05 TCGA-FV-A495-01 12 101017478 101017478 G T GAS2L3 Missense_Mutation p.V299F 0.20 deleterious(0.04) benign(0.361) TCGA-FV-A495-01 12 104060114 104060114 G A STAB2 Missense_Mutation p.A690T 0.05 tolerated(0.36) benign(0.019) TCGA-FV-A495-01 12 119563215 119563215 G A SRRM4 Missense_Mutation p.R182H 0.33 tolerated_low_confidence(0.08) unknown(0) TCGA-FV-A495-01 12 123782650 123782650 T A SBNO1 Missense_Mutation p.Y1305F 0.31 tolerated(0.41) benign(0.001) TCGA-FV-A495-01 12 21665265 21665265 A T GOLT1B Missense_Mutation p.R111S 0.36 tolerated(0.07) probably_damaging(0.999) TCGA-FV-A495-01 12 4543375 4543375 G T FGF6 3'UTR 0.28 TCGA-FV-A495-01 12 53225247 53225247 C T KRT79 Missense_Mutation p.G214E 0.07 tolerated(0.21) benign(0.192) TCGA-FV-A495-01 12 95676231 95676231 G T VEZT Missense_Mutation p.G380V 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-FV-A495-01 12 97301333 97301333 A G NEDD1 5'UTR 0.23 TCGA-FV-A495-01 13 32878064 32878064 G C ZAR1L Missense_Mutation p.D306E 0.08 tolerated(0.14) possibly_damaging(0.55) TCGA-FV-A495-01 13 52768353 52768353 A T MRPS31P5 RNA 0.43 TCGA-FV-A495-01 15 23889752 23889752 C A MAGEL2 Missense_Mutation p.M443I 0.20 tolerated(0.09) possibly_damaging(0.519) TCGA-FV-A495-01 15 31357301 31357301 C A TRPM1 Intron 0.37 TCGA-FV-A495-01 15 51975586 51975586 G A SCG3 Missense_Mutation p.D118N 0.11 deleterious_low_confidence(0) possibly_damaging(0.871) TCGA-FV-A495-01 15 65621220 65621220 C T IGDCC3 3'UTR 0.17 TCGA-FV-A495-01 15 72455767 72455767 G A GRAMD2 Missense_Mutation p.P266S 0.34 tolerated(0.62) benign(0.003) TCGA-FV-A495-01 15 93499777 93499777 T C CHD2 Missense_Mutation p.L633P 0.26 deleterious(0) probably_damaging(0.999) TCGA-FV-A495-01 16 47117548 47117548 C G NETO2 Missense_Mutation p.G388R 0.39 tolerated(0.44) possibly_damaging(0.588) TCGA-FV-A495-01 16 67839340 67839340 C - RANBP10 Frame_Shift_Del p.G113Efs*8 0.21 TCGA-FV-A495-01 16 777559 777559 T G HAGHL Missense_Mutation p.V17G 0.20 deleterious(0) probably_damaging(0.998) TCGA-FV-A495-01 17 20109082 20109082 A G SPECC1 Missense_Mutation p.T574A 0.30 tolerated(1) benign(0.002) TCGA-FV-A495-01 17 7708380 7708380 A G DNAH2 Silent p.E3096E 0.06 TCGA-FV-A495-01 18 29419280 29419280 T C TRAPPC8 Silent p.Q1326Q 0.32 TCGA-FV-A495-01 18 51057189 51057189 C A DCC 3'UTR 0.33 TCGA-FV-A495-01 18 60225965 60225965 T G ZCCHC2 Nonsense_Mutation p.L485* 0.34 TCGA-FV-A495-01 19 11892231 11892231 A G ZNF441 Missense_Mutation p.Y531C 0.24 deleterious(0) probably_damaging(0.998) TCGA-FV-A495-01 19 21240807 21240807 A G ZNF430 Missense_Mutation p.R565G 0.50 tolerated_low_confidence(0.35) benign(0.001) TCGA-FV-A495-01 19 22939264 22939264 C G ZNF99 3'Flank 0.38 TCGA-FV-A495-01 19 31038889 31038889 G A ZNF536 Missense_Mutation p.G788D 0.18 deleterious(0) probably_damaging(1) TCGA-FV-A495-01 19 46850460 46850460 A G PPP5C Missense_Mutation p.N36S 0.16 deleterious(0) probably_damaging(0.972) TCGA-FV-A495-01 19 52090484 52090484 T A ZNF175 Silent p.I300I 0.26 TCGA-FV-A495-01 19 55143640 55143640 C T LILRB1 Missense_Mutation p.P205S 0.24 deleterious(0.04) benign(0.189) TCGA-FV-A495-01 19 56104976 56104976 C T FIZ1 Missense_Mutation p.V111I 0.22 tolerated(0.15) benign(0.299) TCGA-FV-A495-01 19 57327699 57327699 T A PEG3 Missense_Mutation p.Q704L 0.19 tolerated(0.2) benign(0.067) TCGA-FV-A495-01 1 108507415 108507415 T C VAV3 Missense_Mutation p.D26G 0.21 tolerated(0.13) benign(0.364) TCGA-FV-A495-01 1 152681862 152681862 G T LCE4A 3'UTR 0.05 TCGA-FV-A495-01 1 155722050 155722050 C A GON4L Missense_Mutation p.K2057N 0.30 tolerated_low_confidence(0.11) benign(0.003) TCGA-FV-A495-01 1 15675645 15675645 G C FHAD1 Missense_Mutation p.E796D 0.22 deleterious(0.01) possibly_damaging(0.497) TCGA-FV-A495-01 1 182443519 182443519 C T RGSL1 Missense_Mutation p.R425C 0.03 deleterious(0.03) benign(0.051) TCGA-FV-A495-01 1 19746233 19746233 C G CAPZB Missense_Mutation p.Q5H 0.06 deleterious(0) probably_damaging(0.999) TCGA-FV-A495-01 1 45232862 45232862 T A KIF2C 3'UTR 0.23 TCGA-FV-A495-01 1 62913095 62913095 A G USP1 Missense_Mutation p.S445G 0.09 tolerated(0.25) possibly_damaging(0.555) TCGA-FV-A495-01 1 66102511 66102511 T A LEPR Missense_Mutation p.F1104Y 0.06 tolerated(0.06) probably_damaging(0.943) TCGA-FV-A495-01 1 6635364 6635364 G A TAS1R1 Missense_Mutation p.R391Q 0.28 tolerated(0.64) benign(0.004) TCGA-FV-A495-01 20 18005322 18005322 G C OVOL2 Missense_Mutation p.H262Q 0.08 tolerated(0.07) benign(0.043) TCGA-FV-A495-01 20 36983752 36983752 G A LBP Silent p.L177L 0.38 TCGA-FV-A495-01 20 56073609 56073609 C T CTCFL Splice_Site p.X663_splice 0.22 TCGA-FV-A495-01 20 8678275 8678275 G C PLCB1 Missense_Mutation p.G338R 0.24 deleterious(0) benign(0.173) TCGA-FV-A495-01 20 9510307 9510307 A G LAMP5 Missense_Mutation p.D228G 0.16 deleterious(0.01) probably_damaging(1) TCGA-FV-A495-01 22 36960731 36960731 G A CACNG2 Silent p.R213R 0.45 TCGA-FV-A495-01 2 122216520 122216520 C T CLASP1 Missense_Mutation p.D404N 0.21 deleterious(0) probably_damaging(0.952) TCGA-FV-A495-01 2 152670806 152670806 T C ARL5A Silent p.T44T 0.26 TCGA-FV-A495-01 2 189162265 189162265 C T GULP1 Intron 0.39 TCGA-FV-A495-01 2 201399836 201399838 AAG - SGOL2 In_Frame_Del p.E85del 0.17 TCGA-FV-A495-01 2 226273578 226273578 A T NYAP2 Splice_Site 0.16 TCGA-FV-A495-01 2 228882436 228882436 T G SPHKAP Missense_Mutation p.K1045T 0.23 deleterious(0) possibly_damaging(0.842) TCGA-FV-A495-01 2 238245049 238245049 A G COL6A3 Silent p.T2898T 0.20 TCGA-FV-A495-01 2 26676331 26676331 G A DRC1 Silent p.E611E 0.21 TCGA-FV-A495-01 2 74275063 74275063 G C TET3 Missense_Mutation p.R538S 0.05 tolerated(0.39) benign(0.001) TCGA-FV-A495-01 3 108147461 108147461 C G MYH15 Missense_Mutation p.E1214Q 0.04 deleterious(0.01) possibly_damaging(0.872) TCGA-FV-A495-01 3 147128637 147128637 C T ZIC1 Silent p.F246F 0.26 TCGA-FV-A495-01 3 156266720 156266720 C A SSR3 Missense_Mutation p.K111N 0.24 deleterious(0) probably_damaging(0.943) TCGA-FV-A495-01 3 158991644 158991644 A T IQCJ-SCHIP1 Intron 0.27 TCGA-FV-A495-01 3 164776979 164776979 C T SI Missense_Mutation p.G419R 0.03 deleterious(0.01) probably_damaging(0.998) TCGA-FV-A495-01 3 38645342 38645342 C T SCN5A Missense_Mutation p.G584D 0.20 tolerated(0.62) benign(0.236) TCGA-FV-A495-01 3 4693825 4693829 TGTCG - ITPR1 Frame_Shift_Del p.C292Gfs*28 0.27 TCGA-FV-A495-01 3 52863215 52863215 C T ITIH4 Silent p.V57V 0.29 TCGA-FV-A495-01 3 56835759 56835759 G C ARHGEF3 Intron 0.14 TCGA-FV-A495-01 3 77614132 77614132 C T ROBO2 Silent p.T586T 0.15 TCGA-FV-A495-01 4 27024472 27024472 T G STIM2 Missense_Mutation p.S707A 0.19 deleterious_low_confidence(0.01) benign(0.143) TCGA-FV-A495-01 4 366775 366775 T A ZNF141 Missense_Mutation p.F183L 0.23 tolerated(1) possibly_damaging(0.827) TCGA-FV-A495-01 4 42553255 42553255 A G ATP8A1 Missense_Mutation p.V521A 0.27 tolerated(0.07) benign(0.109) TCGA-FV-A495-01 4 5633629 5633629 C T EVC2 Missense_Mutation p.R534K 0.17 deleterious(0) probably_damaging(0.997) TCGA-FV-A495-01 4 70360887 70360889 CTT - UGT2B4 In_Frame_Del p.K231del 0.15 TCGA-FV-A495-01 4 88258304 88258304 C A HSD17B11 3'UTR 0.20 TCGA-FV-A495-01 5 102433403 102433403 C T GIN1 Missense_Mutation p.S241N 0.05 tolerated(0.32) benign(0.002) TCGA-FV-A495-01 5 127686699 127686699 T C FBN2 Splice_Site p.X892_splice 0.06 TCGA-FV-A495-01 5 128365345 128365345 A G SLC27A6 Missense_Mutation p.E543G 0.04 deleterious(0.05) benign(0.071) TCGA-FV-A495-01 5 13820597 13820597 A G DNAH5 Silent p.A2233A 0.21 TCGA-FV-A495-01 5 140203594 140203594 G T PCDHA5 Missense_Mutation p.G745V 0.12 deleterious_low_confidence(0) possibly_damaging(0.731) TCGA-FV-A495-01 5 140307840 140307840 G C PCDHAC1 Missense_Mutation p.A455P 0.10 tolerated(0.3) benign(0.016) TCGA-FV-A495-01 5 148207094 148207094 G C ADRB2 Missense_Mutation p.D234H 0.39 deleterious(0) benign(0.297) TCGA-FV-A495-01 5 150948274 150948274 G T FAT2 Silent p.I73I 0.21 TCGA-FV-A495-01 5 153085452 153085460 GTGAGTGTT - GRIA1 In_Frame_Del p.S561_V563del 0.12 TCGA-FV-A495-01 5 176931755 176931755 C T DOK3 Missense_Mutation p.G268S 0.20 deleterious(0) probably_damaging(1) TCGA-FV-A495-01 5 23527194 23527194 G A PRDM9 Missense_Mutation p.C666Y 0.19 deleterious(0) probably_damaging(1) TCGA-FV-A495-01 5 34925045 34925045 T G BRIX1 Missense_Mutation p.L253V 0.21 tolerated(0.06) probably_damaging(0.927) TCGA-FV-A495-01 5 40945320 40945320 T A C7 Missense_Mutation p.F196L 0.04 tolerated(0.06) benign(0.414) TCGA-FV-A495-01 6 118832526 118832526 G A CEP85L Missense_Mutation p.R401W 0.26 deleterious(0) benign(0.429) TCGA-FV-A495-01 6 121625734 121625734 A G TBC1D32 Silent p.N269N 0.15 TCGA-FV-A495-01 6 138640960 138640960 C T KIAA1244 Missense_Mutation p.A1532V 0.35 deleterious(0.02) probably_damaging(0.998) TCGA-FV-A495-01 6 154360342 154360342 A T OPRM1 Missense_Mutation p.D16V 0.05 unknown(0) TCGA-FV-A495-01 6 27220730 27220730 T C PRSS16 Splice_Site p.X384_splice 0.08 TCGA-FV-A495-01 6 31378413 31378413 C T MICA Missense_Mutation p.P55L 0.24 tolerated(0.94) benign(0.018) TCGA-FV-A495-01 6 36839673 36839673 C G PPIL1 Intron 0.51 TCGA-FV-A495-01 6 39285579 39285579 G T KCNK16 Missense_Mutation p.R160S 0.29 tolerated(0.17) benign(0.054) TCGA-FV-A495-01 6 43480544 43480544 G C YIPF3 Missense_Mutation p.F245L 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-FV-A495-01 6 7390192 7390192 C A RIOK1 5'UTR 0.28 TCGA-FV-A495-01 7 101877505 101877505 C T CUX1 Missense_Mutation p.R1214W 0.24 deleterious(0) unknown(0) TCGA-FV-A495-01 7 104741930 104741930 G A KMT2E Missense_Mutation p.R594K 0.27 deleterious(0.02) benign(0.067) TCGA-FV-A495-01 7 116596768 116596768 A G ST7-OT4 Missense_Mutation p.I121V 0.32 deleterious_low_confidence(0) benign(0.068) TCGA-FV-A495-01 7 127255087 127255087 T C PAX4 Silent p.P61P 0.05 TCGA-FV-A495-01 7 1535088 1535088 G T INTS1 Missense_Mutation p.P605T 0.07 deleterious(0.04) benign(0.012) TCGA-FV-A495-01 7 19761637 19761637 C - TMEM196 3'UTR 0.12 TCGA-FV-A495-01 7 38305036 38305036 A G TRGC1 Missense_Mutation p.L82P 0.28 tolerated(0.1) benign(0.136) TCGA-FV-A495-01 7 42262748 42262748 G A GLI3 Silent p.A35A 0.28 TCGA-FV-A495-01 7 6194392 6194392 C T USP42 Silent p.Y1069Y 0.22 TCGA-FV-A495-01 8 100994297 100994297 A G RGS22 Silent p.I1076I 0.33 TCGA-FV-A495-01 8 104930679 104930679 C A RIMS2 Silent p.R683R 0.23 TCGA-FV-A495-01 8 110417294 110417294 C T PKHD1L1 Missense_Mutation p.P535L 0.24 tolerated(0.12) benign(0.019) TCGA-FV-A495-01 8 110539189 110539189 G T PKHD1L1 Nonsense_Mutation p.G4221* 0.23 TCGA-FV-A495-01 8 133953779 133953779 T C TG Missense_Mutation p.V1742A 0.27 deleterious(0.02) benign(0.08) TCGA-FV-A495-01 8 144995161 144995161 C T PLEC Missense_Mutation p.R3080Q 0.11 possibly_damaging(0.459) TCGA-FV-A495-01 8 22052004 22052004 G A BMP1 Silent p.S448S 0.45 TCGA-FV-A495-01 8 28950346 28950346 C G KIF13B Silent p.V1458V 0.31 TCGA-FV-A495-01 8 40532341 40532341 C T ZMAT4 Nonsense_Mutation p.W153* 0.21 TCGA-FV-A495-01 8 87235302 87235302 G A SLC7A13 Missense_Mutation p.P239L 0.24 tolerated(0.07) possibly_damaging(0.624) TCGA-FV-A495-01 8 87492510 87492511 - A RMDN1 Frame_Shift_Ins p.I213Yfs*18 0.20 TCGA-FV-A495-01 8 91031397 91031397 T C DECR1 Silent p.P138P 0.35 TCGA-FV-A495-01 9 123298712 123298712 T C CDK5RAP2 Silent p.S200S 0.35 TCGA-FV-A495-01 9 84208092 84208092 G A TLE1 Nonsense_Mutation p.Q477* 0.37 TCGA-FV-A495-01 X 102004068 102004068 G A BHLHB9 Missense_Mutation p.G49R 0.29 tolerated(0.16) benign(0.023) TCGA-FV-A495-01 X 112022293 112022293 C G AMOT Missense_Mutation p.S1030T 0.16 benign(0.358) TCGA-FV-A495-01 X 135067806 135067806 G A SLC9A6 Missense_Mutation p.E49K 0.27 tolerated(0.17) benign(0.046) TCGA-FV-A495-01 X 144903985 144903985 C A SLITRK2 Silent p.A14A 0.17 TCGA-FV-A495-01 X 151870678 151870678 G C MAGEA6 3'UTR 0.09 TCGA-FV-A495-01 X 151934799 151934799 C G MAGEA3 3'UTR 0.12 TCGA-FV-A495-01 X 153586830 153586830 A T FLNA Missense_Mutation p.D1527E 0.17 tolerated(0.19) benign(0.006) TCGA-FV-A495-01 X 23953337 23953337 C A CXorf58 Missense_Mutation p.P194T 0.30 deleterious(0) probably_damaging(0.987) TCGA-FV-A495-01 X 31165436 31165436 G A DMD Nonsense_Mutation p.Q3585* 0.06 TCGA-FV-A495-01 X 36319234 36319234 A T CXorf30 Missense_Mutation p.K83M 0.06 deleterious(0) probably_damaging(0.961) TCGA-FV-A495-01 X 41586979 41586979 T A GPR82 Missense_Mutation p.C234S 0.31 tolerated(0.5) benign(0.009) TCGA-FV-A495-01 X 47072228 47072228 A G UBA1 Missense_Mutation p.E871G 0.24 tolerated(0.15) benign(0.042) TCGA-FV-A495-01 X 53106558 53106558 G A GPR173 Missense_Mutation p.G252E 0.20 deleterious(0) probably_damaging(0.995) TCGA-FV-A495-01 X 54989780 54989780 C T PFKFB1 Missense_Mutation p.V45M 0.31 benign(0.123) TCGA-FV-A495-01 X 69501565 69501565 C T ARR3 Silent p.G372G 0.26 TCGA-FV-A495-01 X 72783227 72783227 C A CHIC1 Nonsense_Mutation p.S36* 0.06 TCGA-FV-A495-01 X 78426850 78426850 C G GPR174 Missense_Mutation p.R116G 0.25 deleterious(0) probably_damaging(0.996) TCGA-FV-A496-01 10 103609618 103609618 G A C10orf76 Missense_Mutation p.T631M 0.45 deleterious(0) probably_damaging(0.995) TCGA-FV-A496-01 10 134742941 134742941 G A TTC40 Intron 0.59 TCGA-FV-A496-01 10 43615627 43615627 G A RET Silent p.E902E 0.28 TCGA-FV-A496-01 10 48413956 48413956 C T GDF2 Silent p.T304T 0.19 TCGA-FV-A496-01 10 61719363 61719363 G T C10orf40 5'UTR 0.22 TCGA-FV-A496-01 10 68687250 68687250 G T LRRTM3 Silent p.R192R 0.06 TCGA-FV-A496-01 10 68687251 68687251 A T LRRTM3 Missense_Mutation p.I193F 0.06 deleterious(0) possibly_damaging(0.781) TCGA-FV-A496-01 11 102988459 102988459 C T DYNC2H1 Missense_Mutation p.S289L 0.12 benign(0.003) TCGA-FV-A496-01 11 111367922 111367922 G T BTG4 Intron 0.44 TCGA-FV-A496-01 11 134014143 134014143 G C JAM3 Missense_Mutation p.L88F 0.21 tolerated(0.19) benign(0.248) TCGA-FV-A496-01 11 47801951 47801951 T C NUP160 Missense_Mutation p.I1389V 0.27 deleterious(0.04) possibly_damaging(0.464) TCGA-FV-A496-01 11 48185171 48185171 G T PTPRJ Splice_Site p.X1240_splice 0.54 TCGA-FV-A496-01 11 57577636 57577636 G T CTNND1 Nonsense_Mutation p.G831* 0.25 TCGA-FV-A496-01 11 57577637 57577637 G T CTNND1 Missense_Mutation p.G831V 0.26 deleterious(0.02) possibly_damaging(0.613) TCGA-FV-A496-01 11 61912532 61912532 G A INCENP Missense_Mutation p.D562N 0.54 deleterious(0.01) unknown(0) TCGA-FV-A496-01 11 63277947 63277947 G A LGALS12 Missense_Mutation p.G192S 0.20 tolerated(0.25) possibly_damaging(0.474) TCGA-FV-A496-01 11 64537468 64537468 T G SF1 Missense_Mutation p.E274D 0.46 tolerated(0.19) benign(0.056) TCGA-FV-A496-01 11 78380618 78380618 C T TENM4 Missense_Mutation p.D2258N 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-FV-A496-01 12 10332058 10332058 G A TMEM52B 5'UTR 0.33 TCGA-FV-A496-01 12 120602471 120602471 C A GCN1L1 Missense_Mutation p.R556I 0.07 possibly_damaging(0.778) TCGA-FV-A496-01 12 120936104 120936104 T G DYNLL1 3'UTR 0.33 TCGA-FV-A496-01 12 129559354 129559354 C T TMEM132D Missense_Mutation p.G789E 0.08 deleterious(0) probably_damaging(0.986) TCGA-FV-A496-01 12 54798211 54798211 T C ITGA5 Intron 0.22 TCGA-FV-A496-01 12 57849890 57849890 C T INHBE Silent p.A104A 0.05 TCGA-FV-A496-01 12 57985226 57985226 C T PIP4K2C Silent p.L52L 0.47 TCGA-FV-A496-01 12 8329947 8329947 G A ZNF705A Missense_Mutation p.G224E 0.11 deleterious(0.02) probably_damaging(0.995) TCGA-FV-A496-01 13 114277525 114277525 C T TFDP1 Missense_Mutation p.S37F 0.28 tolerated(0.07) benign(0.288) TCGA-FV-A496-01 13 79175687 79175687 C T POU4F1 Missense_Mutation p.A375T 0.12 tolerated(0.06) unknown(0) TCGA-FV-A496-01 13 84454076 84454076 G T SLITRK1 Missense_Mutation p.Q523K 0.19 deleterious(0.02) benign(0.062) TCGA-FV-A496-01 14 101349498 101349498 G A RTL1 Missense_Mutation p.A543V 0.20 tolerated(0.07) possibly_damaging(0.722) TCGA-FV-A496-01 14 105414938 105414938 C T AHNAK2 Missense_Mutation p.V2284M 0.13 benign(0.002) TCGA-FV-A496-01 14 20898551 20898551 C T KLHL33 Missense_Mutation p.R95H 0.18 tolerated(0.26) benign(0.004) TCGA-FV-A496-01 14 21821900 21821902 TCC - SUPT16H In_Frame_Del p.E960del 0.16 TCGA-FV-A496-01 14 35182517 35182517 T C CFL2 Missense_Mutation p.Y85C 0.52 deleterious(0.03) probably_damaging(0.937) TCGA-FV-A496-01 14 44975318 44975318 G T FSCB Silent p.V291V 0.11 TCGA-FV-A496-01 14 61186834 61186834 G C SIX4 Nonsense_Mutation p.S398* 0.18 TCGA-FV-A496-01 14 75471535 75471535 T G EIF2B2 Missense_Mutation p.F177V 0.23 deleterious(0) probably_damaging(0.994) TCGA-FV-A496-01 14 76640009 76640009 A G GPATCH2L Intron 0.15 TCGA-FV-A496-01 15 43643144 43643144 T C ADAL Missense_Mutation p.C233R 0.33 deleterious(0) probably_damaging(0.993) TCGA-FV-A496-01 15 63796930 63796930 C G USP3 5'UTR 0.49 TCGA-FV-A496-01 16 23409377 23409377 T C COG7 Missense_Mutation p.Y626C 0.23 deleterious(0) probably_damaging(0.998) TCGA-FV-A496-01 16 30543772 30543772 G A ZNF747 3'UTR 0.27 TCGA-FV-A496-01 16 31419146 31419146 G A ITGAD Silent p.A306A 0.19 TCGA-FV-A496-01 16 61687728 61687728 C G CDH8 Missense_Mutation p.R728S 0.14 deleterious(0) probably_damaging(0.991) TCGA-FV-A496-01 16 70165260 70165260 C G PDPR Missense_Mutation p.A262G 0.21 tolerated(0.28) benign(0.024) TCGA-FV-A496-01 16 83999421 83999421 G A OSGIN1 Missense_Mutation p.D415N 0.23 tolerated(0.24) benign(0.279) TCGA-FV-A496-01 16 88498400 88498400 T C ZNF469 Missense_Mutation p.S1480P 0.11 benign(0.005) TCGA-FV-A496-01 16 9000399 9000399 G A USP7 Nonsense_Mutation p.Q438* 0.53 TCGA-FV-A496-01 17 12655884 12655884 C A MYOCD Missense_Mutation p.P427T 0.25 tolerated(0.17) probably_damaging(1) TCGA-FV-A496-01 17 18154288 18154288 T C FLII Missense_Mutation p.Y547C 0.12 deleterious(0) probably_damaging(0.954) TCGA-FV-A496-01 17 36485933 36485933 G A GPR179 Silent p.S1173S 0.24 TCGA-FV-A496-01 17 37922298 37922298 G A IKZF3 Silent p.Y425Y 0.20 TCGA-FV-A496-01 17 40028400 40028400 C T ACLY Missense_Mutation p.C893Y 0.19 deleterious(0) probably_damaging(0.996) TCGA-FV-A496-01 17 48601116 48601116 G A MYCBPAP Missense_Mutation p.V579I 0.56 tolerated(0.5) benign(0.006) TCGA-FV-A496-01 17 48823123 48823123 C T LUC7L3 Missense_Mutation p.R246C 0.17 tolerated(0.11) unknown(0) TCGA-FV-A496-01 17 60493468 60493468 C T EFCAB3 Silent p.D417D 0.23 TCGA-FV-A496-01 17 61315394 61315394 A T TANC2 Missense_Mutation p.Q256L 0.07 tolerated(0.13) benign(0.065) TCGA-FV-A496-01 17 61611361 61611361 C T KCNH6 Silent p.L264L 0.03 TCGA-FV-A496-01 17 67300830 67300830 A T ABCA5 Missense_Mutation p.F304I 0.36 deleterious(0) possibly_damaging(0.576) TCGA-FV-A496-01 17 7417050 7417070 CCCAGCTACAGCCCCAGCTCG - POLR2A In_Frame_Del p.S1828_P1834del 0.08 TCGA-FV-A496-01 17 74625422 74625422 C A ST6GALNAC1 Missense_Mutation p.G168V 0.07 possibly_damaging(0.777) TCGA-FV-A496-01 18 72226672 72226672 G T CNDP1 Missense_Mutation p.A90S 0.07 deleterious(0.02) probably_damaging(0.967) TCGA-FV-A496-01 19 12692141 12692141 A T ZNF490 Missense_Mutation p.Y250N 0.32 deleterious(0) probably_damaging(1) TCGA-FV-A496-01 19 14629102 14629102 G A DNAJB1 Silent p.I20I 0.72 TCGA-FV-A496-01 19 19626948 19626948 A C NDUFA13 5'UTR 0.46 TCGA-FV-A496-01 19 21688527 21688527 T C ZNF429 5'UTR 0.30 TCGA-FV-A496-01 19 34687544 34687544 A G LSM14A Silent p.S97S 0.45 TCGA-FV-A496-01 19 35800859 35800859 G C MAG Silent p.P438P 0.39 TCGA-FV-A496-01 19 38912788 38912788 G A RASGRP4 Missense_Mutation p.S10F 0.05 deleterious(0) possibly_damaging(0.62) TCGA-FV-A496-01 19 41387953 41387953 A T CYP2A7 Missense_Mutation p.C55S 0.46 tolerated(0.43) benign(0.004) TCGA-FV-A496-01 19 48543934 48543934 G C CABP5 Missense_Mutation p.L56V 0.12 tolerated(0.41) probably_damaging(0.987) TCGA-FV-A496-01 19 54407908 54407908 A T PRKCG Missense_Mutation p.D559V 0.11 deleterious(0) probably_damaging(0.989) TCGA-FV-A496-01 19 54694193 54694193 C T TSEN34 5'Flank 0.20 TCGA-FV-A496-01 19 55086870 55086870 G T LILRA2 Missense_Mutation p.G268V 0.23 tolerated(0.33) possibly_damaging(0.893) TCGA-FV-A496-01 19 58264871 58264871 G A AC003006.7 Missense_Mutation p.D125N 0.18 deleterious(0.02) benign(0.398) TCGA-FV-A496-01 19 58265306 58265306 G A ZNF776 Missense_Mutation p.D270N 0.13 deleterious(0.02) possibly_damaging(0.484) TCGA-FV-A496-01 19 58929119 58929119 G A ZNF584 Missense_Mutation p.D412N 0.12 tolerated(0.17) possibly_damaging(0.456) TCGA-FV-A496-01 19 7987327 7987327 T G SNAPC2 Intron 0.53 TCGA-FV-A496-01 1 12908257 12908257 G A HNRNPCL1 5'UTR 0.03 TCGA-FV-A496-01 1 144814737 144814737 G A NBPF9 Silent p.K124K 0.07 TCGA-FV-A496-01 1 145585532 145585532 T G PIAS3 Silent p.P599P 0.75 TCGA-FV-A496-01 1 150680868 150680868 G A HORMAD1 Silent p.N137N 0.13 TCGA-FV-A496-01 1 154018769 154018769 G A NUP210L Missense_Mutation p.T1187I 0.04 deleterious(0) possibly_damaging(0.693) TCGA-FV-A496-01 1 157771741 157771741 C T FCRL1 Missense_Mutation p.A284T 0.12 tolerated(0.1) benign(0.411) TCGA-FV-A496-01 1 160121863 160121863 T G ATP1A4 Silent p.A11A 0.48 TCGA-FV-A496-01 1 181700351 181700351 C A CACNA1E Missense_Mutation p.P761T 0.19 tolerated(0.06) possibly_damaging(0.641) TCGA-FV-A496-01 1 205890933 205890933 G A SLC26A9 Missense_Mutation p.P606S 0.34 tolerated(1) benign(0.008) TCGA-FV-A496-01 1 220089062 220089067 AAGTCC - SLC30A10 In_Frame_Del p.D395_L396del 0.08 TCGA-FV-A496-01 1 234536930 234536930 T A TARBP1 Silent p.L1356L 0.58 TCGA-FV-A496-01 1 42922564 42922564 C T PPCS Missense_Mutation p.P110S 0.08 tolerated(0.3) benign(0.001) TCGA-FV-A496-01 1 4772487 4772487 C T AJAP1 Missense_Mutation p.T186M 0.30 deleterious(0) probably_damaging(0.98) TCGA-FV-A496-01 1 53727880 53727880 C T LRP8 Splice_Site p.X592_splice 0.27 TCGA-FV-A496-01 1 7724692 7724692 G T CAMTA1 Silent p.S695S 0.70 TCGA-FV-A496-01 20 20013911 20013911 A G NAA20 3'UTR 0.33 TCGA-FV-A496-01 20 35219383 35219383 C T TGIF2 Missense_Mutation p.P88L 0.48 deleterious(0.03) probably_damaging(0.999) TCGA-FV-A496-01 20 3728929 3728929 G A HSPA12B Silent p.S247S 0.20 TCGA-FV-A496-01 20 44588920 44588920 G A ZNF335 Silent p.F649F 0.06 TCGA-FV-A496-01 21 27253977 27253977 G C APP 3'UTR 0.59 TCGA-FV-A496-01 22 19463069 19463069 G C UFD1L Silent p.S20S 0.17 TCGA-FV-A496-01 22 32756294 32756294 C A RFPL3 Missense_Mutation p.D143E 0.22 deleterious(0) probably_damaging(0.975) TCGA-FV-A496-01 22 45939311 45939311 G A FBLN1 Missense_Mutation p.R409H 0.48 deleterious(0.01) possibly_damaging(0.84) TCGA-FV-A496-01 2 108499260 108499260 C A RGPD4 Missense_Mutation p.L1733I 0.20 deleterious_low_confidence(0) possibly_damaging(0.694) TCGA-FV-A496-01 2 141128766 141128766 A C LRP1B Missense_Mutation p.C3619W 0.14 possibly_damaging(0.892) TCGA-FV-A496-01 2 152466364 152466364 C G NEB Missense_Mutation p.D4097H 0.22 probably_damaging(0.997) TCGA-FV-A496-01 2 167056365 167056366 AG - SCN9A Frame_Shift_Del p.L1584Sfs*2 0.29 TCGA-FV-A496-01 2 204067444 204067444 A T NBEAL1 Silent p.G2453G 0.05 TCGA-FV-A496-01 2 219874178 219874178 G A CCDC108 Missense_Mutation p.S1486F 0.40 deleterious(0.01) possibly_damaging(0.844) TCGA-FV-A496-01 2 234628158 234628158 A G UGT1A4 Missense_Mutation p.Y231C 0.28 deleterious(0) probably_damaging(0.967) TCGA-FV-A496-01 2 3502749 3502749 C T ADI1 Silent p.L175L 0.15 TCGA-FV-A496-01 2 61726908 61726908 T A XPO1 Missense_Mutation p.E177V 0.05 deleterious(0) probably_damaging(0.999) TCGA-FV-A496-01 2 61726909 61726909 C T XPO1 Missense_Mutation p.E177K 0.05 deleterious(0) probably_damaging(0.999) TCGA-FV-A496-01 3 101571988 101571988 T G NFKBIZ Missense_Mutation p.N206K 0.40 deleterious_low_confidence(0.02) benign(0.044) TCGA-FV-A496-01 3 118865064 118865064 G C C3orf30 Missense_Mutation p.A10P 0.06 tolerated(0.18) unknown(0) TCGA-FV-A496-01 3 130145236 130145236 G A COL6A5 Missense_Mutation p.R1742Q 0.03 tolerated(0.08) benign(0.124) TCGA-FV-A496-01 3 184008634 184008634 C A ECE2 Missense_Mutation p.A725D 0.05 deleterious(0) probably_damaging(1) TCGA-FV-A496-01 3 184711798 184711798 G C VPS8 Missense_Mutation p.G1205R 0.04 deleterious(0) probably_damaging(0.937) TCGA-FV-A496-01 3 39306901 39306901 T C CX3CR1 3'UTR 0.31 TCGA-FV-A496-01 3 53845180 53845180 C T CACNA1D Missense_Mutation p.P2098L 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FV-A496-01 3 77656991 77656991 A C ROBO2 Missense_Mutation p.K1076T 0.18 tolerated(0.05) benign(0.403) TCGA-FV-A496-01 4 114274746 114274746 G C ANK2 Missense_Mutation p.V1658L 0.48 benign(0.003) TCGA-FV-A496-01 4 164394922 164394922 G A TKTL2 5'UTR 0.69 TCGA-FV-A496-01 4 177069402 177069402 A G WDR17 Missense_Mutation p.S629G 0.05 deleterious(0) probably_damaging(0.996) TCGA-FV-A496-01 4 42145862 42145862 C T BEND4 Missense_Mutation p.E213K 0.27 tolerated_low_confidence(0.17) benign(0.017) TCGA-FV-A496-01 4 438107 438107 C A ZNF721 Missense_Mutation p.R50M 0.18 tolerated(0.09) possibly_damaging(0.709) TCGA-FV-A496-01 4 74276072 74276073 AG - ALB Frame_Shift_Del p.R221Tfs*30 0.22 TCGA-FV-A496-01 4 79398969 79398969 G A FRAS1 Missense_Mutation p.V2618I 0.53 probably_damaging(0.966) TCGA-FV-A496-01 4 88766214 88766214 T C MEPE Missense_Mutation p.V65A 0.41 tolerated(0.37) benign(0.015) TCGA-FV-A496-01 4 90170573 90170573 G T GPRIN3 Missense_Mutation p.S230Y 0.33 deleterious(0.01) possibly_damaging(0.759) TCGA-FV-A496-01 5 127705012 127705012 C A FBN2 Missense_Mutation p.S704I 0.33 deleterious(0) possibly_damaging(0.771) TCGA-FV-A496-01 5 140517496 140517496 G C PCDHB5 3'UTR 0.03 TCGA-FV-A496-01 5 141026047 141026047 T G FCHSD1 Intron 0.50 TCGA-FV-A496-01 5 158139190 158139190 G A EBF1 Silent p.N507N 0.30 TCGA-FV-A496-01 5 223682 223682 C T SDHA Missense_Mutation p.S50F 0.22 tolerated_low_confidence(0.49) benign(0.002) TCGA-FV-A496-01 5 61690415 61690415 G C DIMT1 Missense_Mutation p.Q156E 0.19 deleterious(0) possibly_damaging(0.748) TCGA-FV-A496-01 6 105585661 105585661 C T BVES 5'Flank 0.14 TCGA-FV-A496-01 6 155504406 155504406 G T TIAM2 Missense_Mutation p.G946W 0.24 deleterious(0) probably_damaging(0.997) TCGA-FV-A496-01 6 159029441 159029441 C T TMEM181 Silent p.F387F 0.45 TCGA-FV-A496-01 6 25652581 25652581 A G SCGN 5'UTR 0.41 TCGA-FV-A496-01 6 29798176 29798176 C T HLA-G 3'UTR 0.28 TCGA-FV-A496-01 6 31742377 31742377 C T VWA7 Missense_Mutation p.E213K 0.32 tolerated(0.3) benign(0.01) TCGA-FV-A496-01 6 42932089 42932089 T G PEX6 Missense_Mutation p.K976T 0.40 deleterious(0.01) possibly_damaging(0.696) TCGA-FV-A496-01 6 42986679 42986679 G T KLHDC3 Missense_Mutation p.G300V 0.18 deleterious(0.01) benign(0.238) TCGA-FV-A496-01 6 49989618 49989618 G T DEFB110 Missense_Mutation p.H11N 0.20 deleterious(0) benign(0) TCGA-FV-A496-01 6 88128105 88128105 C A C6ORF165 Missense_Mutation p.Q271K 0.23 deleterious(0) probably_damaging(1) TCGA-FV-A496-01 6 96997391 96997391 G A UFL1 Missense_Mutation p.E542K 0.05 deleterious(0.01) possibly_damaging(0.721) TCGA-FV-A496-01 7 141734140 141734140 A C MGAM Missense_Mutation p.H583P 0.86 deleterious(0) probably_damaging(0.996) TCGA-FV-A496-01 7 142625797 142625797 C T TRPV5 Missense_Mutation p.G251S 0.12 deleterious(0) probably_damaging(0.955) TCGA-FV-A496-01 7 18767353 18767353 C A HDAC9 Missense_Mutation p.R628S 0.06 tolerated(0.43) benign(0.04) TCGA-FV-A496-01 7 4008918 4008918 C T SDK1 Missense_Mutation p.R526W 0.35 deleterious(0) possibly_damaging(0.846) TCGA-FV-A496-01 7 47384383 47384383 T A TNS3 Missense_Mutation p.S874C 0.51 tolerated(0.05) benign(0.043) TCGA-FV-A496-01 7 48559880 48559880 C T ABCA13 Nonsense_Mutation p.R4681* 0.04 TCGA-FV-A496-01 7 4900131 4900131 C T PAPOLB Missense_Mutation p.M436I 0.20 deleterious(0.03) benign(0.088) TCGA-FV-A496-01 7 57188708 57188708 G A ZNF479 Silent p.H138H 0.43 TCGA-FV-A496-01 7 80435065 80435065 A T SEMA3C Missense_Mutation p.L183H 0.15 deleterious(0) probably_damaging(1) TCGA-FV-A496-01 7 99314832 99314832 T G CYP3A7 Missense_Mutation p.E163D 0.30 tolerated(0.07) benign(0.03) TCGA-FV-A496-01 7 99691936 99691936 G A MCM7 Nonsense_Mutation p.Q570* 0.07 TCGA-FV-A496-01 8 113519031 113519031 G T CSMD3 Missense_Mutation p.S1595Y 0.35 deleterious(0) probably_damaging(0.995) TCGA-FV-A496-01 8 131104271 131104271 G T ASAP1 Missense_Mutation p.D840E 0.46 tolerated(0.79) probably_damaging(0.967) TCGA-FV-A496-01 8 22136992 22136992 T G PIWIL2 Silent p.A31A 0.45 TCGA-FV-A496-01 8 72754743 72754743 G A MSC 3'UTR 0.40 TCGA-FV-A496-01 8 72967815 72967815 C A TRPA1 Missense_Mutation p.C462F 0.21 deleterious(0) probably_damaging(0.999) TCGA-FV-A496-01 9 34610870 34610870 G C RPP25L Missense_Mutation p.L142V 0.36 tolerated(0.12) possibly_damaging(0.636) TCGA-FV-A496-01 9 95228783 95228783 C T ASPN Missense_Mutation p.R153Q 0.08 tolerated(0.64) benign(0.097) TCGA-FV-A496-01 9 97321208 97321208 G T FBP2 3'UTR 0.15 TCGA-FV-A496-01 X 110497516 110497516 T - CAPN6 Frame_Shift_Del p.E94Gfs*42 0.49 TCGA-FV-A496-01 X 75003421 75003421 C T MAGEE2 Missense_Mutation p.R489K 0.38 tolerated(0.96) benign(0) TCGA-FV-A496-01 X 83128349 83128349 T A CYLC1 Silent p.T211T 0.43 TCGA-FV-A4ZP-01 10 101953098 101953098 C T CHUK Missense_Mutation p.E689K 0.20 tolerated(0.92) benign(0.003) TCGA-FV-A4ZP-01 10 101996663 101996663 C T CWF19L1 Missense_Mutation p.A440T 0.12 deleterious(0) probably_damaging(0.979) TCGA-FV-A4ZP-01 10 117027800 117027800 T A ATRNL1 Intron 0.27 TCGA-FV-A4ZP-01 10 37442511 37442511 G A ANKRD30A Silent p.E517E 0.07 TCGA-FV-A4ZP-01 10 63851583 63851583 C A ARID5B Missense_Mutation p.S787R 0.15 tolerated(0.24) benign(0.125) TCGA-FV-A4ZP-01 10 86001094 86001094 C A LRIT1 Missense_Mutation p.M34I 0.37 tolerated(0.16) benign(0.001) TCGA-FV-A4ZP-01 11 107663412 107663412 T C SLC35F2 Missense_Mutation p.S352G 0.24 tolerated(0.11) benign(0.005) TCGA-FV-A4ZP-01 11 12958680 12958680 G A TEAD1 Missense_Mutation p.E398K 0.15 deleterious(0) probably_damaging(0.998) TCGA-FV-A4ZP-01 11 4945247 4945247 G T OR51G1 Missense_Mutation p.T108N 0.46 tolerated(0.15) possibly_damaging(0.67) TCGA-FV-A4ZP-01 11 58722261 58722261 G A GLYATL1 Missense_Mutation p.D100N 0.23 tolerated(0.06) possibly_damaging(0.823) TCGA-FV-A4ZP-01 11 64567809 64567811 TCT - MAP4K2 In_Frame_Del p.K260del 0.17 TCGA-FV-A4ZP-01 11 65684886 65684886 C T C11orf68 3'UTR 0.27 TCGA-FV-A4ZP-01 11 6650989 6650989 T C DCHS1 Missense_Mutation p.Q1650R 0.12 deleterious(0.04) benign(0.11) TCGA-FV-A4ZP-01 11 7021610 7021610 A T ZNF214 Missense_Mutation p.V435E 0.28 deleterious(0) probably_damaging(0.93) TCGA-FV-A4ZP-01 11 73978139 73978139 A T P4HA3 3'UTR 0.31 TCGA-FV-A4ZP-01 11 92531022 92531022 A T FAT3 Nonsense_Mutation p.K1615* 0.25 TCGA-FV-A4ZP-01 12 10531200 10531200 T C KLRK1 Missense_Mutation p.M128V 0.38 tolerated(0.59) benign(0.001) TCGA-FV-A4ZP-01 12 113826501 113826501 C T PLBD2 3'UTR 0.48 TCGA-FV-A4ZP-01 12 122252796 122252796 C T SETD1B Missense_Mutation p.A892V 0.25 unknown(0) TCGA-FV-A4ZP-01 12 52115518 52115518 C T SCN8A Silent p.R608R 0.67 TCGA-FV-A4ZP-01 12 56563450 56563450 C T SMARCC2 Missense_Mutation p.E829K 0.37 tolerated(0.16) benign(0.011) TCGA-FV-A4ZP-01 12 62926222 62926222 G T MON2 Nonsense_Mutation p.E469* 0.15 TCGA-FV-A4ZP-01 13 100020041 100020041 G A UBAC2 Missense_Mutation p.G270R 0.33 deleterious(0.05) benign(0.063) TCGA-FV-A4ZP-01 13 103339396 103339396 C - METTL21C Frame_Shift_Del p.L98Ffs*12 0.14 TCGA-FV-A4ZP-01 13 111811416 111811416 A G ARHGEF7 Missense_Mutation p.T99A 0.37 tolerated_low_confidence(1) benign(0.001) TCGA-FV-A4ZP-01 13 32914479 32914479 C G BRCA2 Missense_Mutation p.A1996G 0.36 deleterious(0.01) probably_damaging(0.986) TCGA-FV-A4ZP-01 13 58206732 58206732 C A PCDH17 Missense_Mutation p.L18I 0.22 deleterious(0.01) possibly_damaging(0.844) TCGA-FV-A4ZP-01 13 76381696 76381696 C A LMO7 Missense_Mutation p.T193N 0.45 deleterious(0.04) probably_damaging(0.991) TCGA-FV-A4ZP-01 14 20020053 20020053 T A POTEM Silent p.T56T 0.15 TCGA-FV-A4ZP-01 15 28230305 28230305 C T OCA2 Nonsense_Mutation p.W423* 0.46 TCGA-FV-A4ZP-01 15 75652525 75652525 G A MAN2C1 Missense_Mutation p.R538W 0.42 tolerated(0.18) possibly_damaging(0.663) TCGA-FV-A4ZP-01 16 55513476 55513476 G A MMP2 Missense_Mutation p.A29T 0.06 tolerated(0.06) possibly_damaging(0.821) TCGA-FV-A4ZP-01 16 67697652 67697652 G A ENKD1 Silent p.S217S 0.34 TCGA-FV-A4ZP-01 16 88780118 88780118 A G CTU2 Missense_Mutation p.K313E 0.36 deleterious(0) probably_damaging(0.993) TCGA-FV-A4ZP-01 17 20108938 20108938 G A SPECC1 Missense_Mutation p.E526K 0.21 deleterious(0) probably_damaging(0.998) TCGA-FV-A4ZP-01 17 57754422 57754422 C T CLTC Missense_Mutation p.P890L 0.34 deleterious(0) probably_damaging(0.934) TCGA-FV-A4ZP-01 17 58503178 58503178 G A C17orf64 Missense_Mutation p.S29N 0.32 tolerated(0.28) benign(0.01) TCGA-FV-A4ZP-01 17 61791458 61791458 G A STRADA Missense_Mutation p.A45V 0.47 tolerated(0.14) possibly_damaging(0.471) TCGA-FV-A4ZP-01 17 7577082 7577082 C T TP53 Missense_Mutation p.E286K 0.61 deleterious(0) probably_damaging(0.982) TCGA-FV-A4ZP-01 18 3083787 3083787 T A MYOM1 Missense_Mutation p.N1495I 0.14 deleterious(0) benign(0.25) TCGA-FV-A4ZP-01 18 8143667 8143667 C G PTPRM Silent p.V730V 0.59 TCGA-FV-A4ZP-01 19 12739344 12739344 G A ZNF791 Missense_Mutation p.G334E 0.38 tolerated(0.05) probably_damaging(1) TCGA-FV-A4ZP-01 19 14274081 14274081 G A LPHN1 Missense_Mutation p.R183C 0.27 deleterious(0) probably_damaging(0.997) TCGA-FV-A4ZP-01 19 22002022 22002022 C A ZNF43 Missense_Mutation p.G2V 0.41 deleterious(0) probably_damaging(0.927) TCGA-FV-A4ZP-01 19 36120002 36120002 A G RBM42 5'UTR 0.39 TCGA-FV-A4ZP-01 19 43259369 43259369 C T PSG8 Silent p.E253E 0.29 TCGA-FV-A4ZP-01 19 45488541 45488541 G A CLPTM1 Missense_Mutation p.A218T 0.27 tolerated(0.19) benign(0.261) TCGA-FV-A4ZP-01 19 53770602 53770602 A C VN1R4 Missense_Mutation p.V106G 0.12 deleterious(0) benign(0.373) TCGA-FV-A4ZP-01 19 9060557 9060557 G A MUC16 Silent p.S8963S 0.21 TCGA-FV-A4ZP-01 19 932472 932472 G C ARID3A Missense_Mutation p.E141D 0.21 tolerated_low_confidence(0.5) benign(0.002) TCGA-FV-A4ZP-01 1 110950487 110950487 A G LAMTOR5 Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0) benign(0.092) TCGA-FV-A4ZP-01 1 118629516 118629516 C A SPAG17 Missense_Mutation p.C492F 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-FV-A4ZP-01 1 150461451 150461451 C G TARS2 Missense_Mutation p.A92G 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-FV-A4ZP-01 1 152382192 152382192 C G CRNN Missense_Mutation p.D456H 0.10 deleterious(0.01) probably_damaging(0.917) TCGA-FV-A4ZP-01 1 161091967 161091967 C G DEDD Silent p.L309L 0.33 TCGA-FV-A4ZP-01 1 162824806 162824806 C A C1orf110 Missense_Mutation p.G220W 0.10 tolerated(0.19) benign(0.418) TCGA-FV-A4ZP-01 1 181725193 181725193 C - CACNA1E Frame_Shift_Del p.L1365Sfs*18 0.38 TCGA-FV-A4ZP-01 1 182852766 182852766 G A DHX9 Missense_Mutation p.D1086N 0.28 tolerated(0.77) benign(0.029) TCGA-FV-A4ZP-01 1 18810841 18810841 A G KLHDC7A 3'UTR 0.42 TCGA-FV-A4ZP-01 1 201291111 201291111 G A PKP1 Silent p.V472V 0.15 TCGA-FV-A4ZP-01 1 216173842 216173842 T C USH2A Missense_Mutation p.N2130D 0.12 benign(0.049) TCGA-FV-A4ZP-01 1 216373074 216373074 C G USH2A Missense_Mutation p.V1236L 0.41 benign(0.049) TCGA-FV-A4ZP-01 1 231858293 231858293 A G DISC1 Intron 0.10 TCGA-FV-A4ZP-01 1 2333628 2333628 T C RER1 Intron 0.04 TCGA-FV-A4ZP-01 1 64624861 64624861 G T ROR1 Missense_Mutation p.A458S 0.43 tolerated(0.5) benign(0.009) TCGA-FV-A4ZP-01 1 89414796 89414796 G A CCBL2 Silent p.I373I 0.23 TCGA-FV-A4ZP-01 1 89664559 89664561 TTC - GBP4 5'UTR 0.41 TCGA-FV-A4ZP-01 1 90401556 90401556 C T LRRC8D 3'UTR 0.12 TCGA-FV-A4ZP-01 20 13971257 13971257 G A SEL1L2 5'UTR 0.46 TCGA-FV-A4ZP-01 20 16410519 16410523 ATAAG - KIF16B Frame_Shift_Del p.L470Sfs*11 0.30 TCGA-FV-A4ZP-01 20 40980875 40980875 G C PTPRT Missense_Mutation p.S537R 0.18 tolerated(0.21) benign(0.005) TCGA-FV-A4ZP-01 20 422333 422333 C A TBC1D20 Missense_Mutation p.R175S 0.34 deleterious(0.03) probably_damaging(0.993) TCGA-FV-A4ZP-01 20 5843711 5843711 G A C20orf196 Missense_Mutation p.A74T 0.11 tolerated(0.15) benign(0.001) TCGA-FV-A4ZP-01 21 10998311 10998311 C G TPTE RNA 0.10 TCGA-FV-A4ZP-01 22 21153477 21153477 G A PI4KA Silent p.P636P 0.23 TCGA-FV-A4ZP-01 22 22843682 22843682 C T ZNF280B Silent p.Q14Q 0.15 TCGA-FV-A4ZP-01 22 41967939 41967939 G A CSDC2 5'UTR 0.70 TCGA-FV-A4ZP-01 22 46772959 46772959 G A CELSR1 Missense_Mutation p.P2528L 0.44 deleterious(0.03) possibly_damaging(0.631) TCGA-FV-A4ZP-01 2 11752722 11752722 G A GREB1 Silent p.G1036G 0.21 TCGA-FV-A4ZP-01 2 135659533 135659533 C G ACMSD 3'UTR 0.32 TCGA-FV-A4ZP-01 2 210574887 210574887 G A MAP2 Missense_Mutation p.R1661Q 0.14 tolerated(0.09) probably_damaging(0.995) TCGA-FV-A4ZP-01 2 216249663 216249663 G T FN1 Missense_Mutation p.A1550E 0.12 deleterious(0.04) benign(0.246) TCGA-FV-A4ZP-01 2 220421321 220421321 G A OBSL1 Silent p.A1397A 0.37 TCGA-FV-A4ZP-01 2 228389469 228389487 GGTTTGTAGTCCCCAGTTG - AGFG1 Splice_Site p.X181_splice 0.13 TCGA-FV-A4ZP-01 2 233348748 233348748 A T ECEL1 Missense_Mutation p.F457Y 0.35 deleterious(0.04) probably_damaging(0.997) TCGA-FV-A4ZP-01 2 48925801 48925801 C T LHCGR Silent p.L273L 0.10 TCGA-FV-A4ZP-01 3 108127246 108127246 T G MYH15 Missense_Mutation p.I1521L 0.22 tolerated(0.05) possibly_damaging(0.578) TCGA-FV-A4ZP-01 3 12859283 12859283 G T CAND2 Missense_Mutation p.G951V 0.13 deleterious(0) probably_damaging(0.999) TCGA-FV-A4ZP-01 3 129695783 129695783 G T TRH Silent p.R151R 0.36 TCGA-FV-A4ZP-01 3 18390856 18390856 G C SATB1 Missense_Mutation p.L732V 0.17 tolerated(1) benign(0.004) TCGA-FV-A4ZP-01 3 3221334 3221334 T C CRBN Missense_Mutation p.N13S 0.35 deleterious_low_confidence(0.03) benign(0.017) TCGA-FV-A4ZP-01 3 45754687 45754687 A T SACM1L Missense_Mutation p.E181V 0.38 deleterious(0.01) possibly_damaging(0.703) TCGA-FV-A4ZP-01 3 66436448 66436448 G C LRIG1 Missense_Mutation p.H582Q 0.35 deleterious(0.03) benign(0.291) TCGA-FV-A4ZP-01 4 104511152 104511152 C G TACR3 Splice_Site p.X362_splice 0.17 TCGA-FV-A4ZP-01 4 118005773 118005789 CAAGATAAACACAATGG - TRAM1L1 Frame_Shift_Del p.A254Gfs*2 0.29 TCGA-FV-A4ZP-01 4 153864380 153864380 C T FHDC1 Silent p.S57S 0.15 TCGA-FV-A4ZP-01 4 57164398 57164398 G A KIAA1211 Translation_Start_Site p.M1? 0.18 deleterious(0) possibly_damaging(0.781) TCGA-FV-A4ZP-01 4 57181429 57181429 G A KIAA1211 Silent p.S587S 0.40 TCGA-FV-A4ZP-01 4 62599267 62599267 G T LPHN3 Missense_Mutation p.R397I 0.11 tolerated(0.21) benign(0.035) TCGA-FV-A4ZP-01 4 72897750 72897750 G T NPFFR2 Missense_Mutation p.W44C 0.08 tolerated_low_confidence(0.09) benign(0) TCGA-FV-A4ZP-01 4 84222134 84222134 C T HPSE Missense_Mutation p.G484E 0.20 deleterious(0.02) possibly_damaging(0.88) TCGA-FV-A4ZP-01 5 100191909 100191909 C A ST8SIA4 Missense_Mutation p.G232V 0.39 possibly_damaging(0.757) TCGA-FV-A4ZP-01 5 140532467 140532467 T C PCDHB6 3'UTR 0.50 TCGA-FV-A4ZP-01 5 140745937 140745937 C A PCDHGA5 Silent p.T680T 0.21 TCGA-FV-A4ZP-01 5 37176032 37176032 T C C5orf42 Missense_Mutation p.D1986G 0.14 deleterious(0.01) possibly_damaging(0.625) TCGA-FV-A4ZP-01 6 107391665 107391665 G A BEND3 Missense_Mutation p.P244S 0.48 tolerated(0.13) probably_damaging(0.998) TCGA-FV-A4ZP-01 6 117113958 117113958 T C GPRC6A Missense_Mutation p.T710A 0.14 tolerated(0.49) benign(0.043) TCGA-FV-A4ZP-01 6 128135050 128135050 G T THEMIS Missense_Mutation p.P246T 0.24 tolerated(0.29) possibly_damaging(0.625) TCGA-FV-A4ZP-01 6 128135051 128135051 G T THEMIS Silent p.L245L 0.24 TCGA-FV-A4ZP-01 6 136600958 136600958 C A BCLAF1 Missense_Mutation p.R16I 0.10 deleterious_low_confidence(0) unknown(0) TCGA-FV-A4ZP-01 6 29556520 29556520 G C OR2H2 Missense_Mutation p.E267Q 0.03 deleterious(0.01) benign(0.243) TCGA-FV-A4ZP-01 6 30080616 30080616 A C TRIM31 5'UTR 0.30 TCGA-FV-A4ZP-01 6 97533184 97533184 C A KLHL32 Silent p.R198R 0.26 TCGA-FV-A4ZP-01 7 157959802 157959802 G A PTPRN2 Missense_Mutation p.A244V 0.46 deleterious(0.03) benign(0.175) TCGA-FV-A4ZP-01 7 42976921 42976921 A G MRPL32 Missense_Mutation p.N105D 0.27 tolerated(0.17) benign(0.021) TCGA-FV-A4ZP-01 7 54621656 54621656 T A VSTM2A Intron 0.04 TCGA-FV-A4ZP-01 7 63538068 63538068 A T ZNF727 Missense_Mutation p.N214I 0.64 tolerated(0.33) probably_damaging(0.996) TCGA-FV-A4ZP-01 7 87051507 87051507 T A ABCB4 Missense_Mutation p.Q749L 0.14 deleterious(0.04) benign(0.143) TCGA-FV-A4ZP-01 7 87170675 87170675 G T ABCB1 Missense_Mutation p.Q773K 0.14 deleterious(0.01) possibly_damaging(0.567) TCGA-FV-A4ZP-01 7 99811770 99811770 G A STAG3 3'UTR 0.13 TCGA-FV-A4ZP-01 8 125990115 125990115 T C ZNF572 3'UTR 0.66 TCGA-FV-A4ZP-01 8 59750851 59750851 C T TOX Missense_Mutation p.R238Q 0.14 deleterious(0) probably_damaging(0.945) TCGA-FV-A4ZP-01 8 85799965 85799965 C T RALYL Missense_Mutation p.T284I 0.06 tolerated(0.06) probably_damaging(0.951) TCGA-FV-A4ZP-01 8 85799990 85799990 T C RALYL Silent p.D292D 0.15 TCGA-FV-A4ZP-01 9 101608380 101608380 A G GALNT12 Missense_Mutation p.E527G 0.17 tolerated(0.37) benign(0.257) TCGA-FV-A4ZP-01 9 120475751 120475751 C T TLR4 Missense_Mutation p.L449F 0.13 deleterious(0) probably_damaging(1) TCGA-FV-A4ZP-01 9 129595854 129595854 G A ZBTB43 Missense_Mutation p.G356R 0.25 deleterious(0.03) possibly_damaging(0.854) TCGA-FV-A4ZP-01 9 134363453 134363453 C T PRRC2B Silent p.A2065A 0.11 TCGA-FV-A4ZP-01 9 34724216 34724216 C G FAM205A Missense_Mutation p.M1007I 0.26 tolerated(0.11) benign(0.007) TCGA-FV-A4ZP-01 9 74355033 74355033 A G TMEM2 Missense_Mutation p.Y384H 0.24 tolerated(0.54) benign(0) TCGA-FV-A4ZP-01 X 135863020 135863020 C T ARHGEF6 Missense_Mutation p.V8M 0.69 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FV-A4ZP-01 X 2407852 2407852 G A ZBED1 Silent p.F303F 0.05 TCGA-FV-A4ZP-01 X 48814825 48814825 A G OTUD5 Missense_Mutation p.I3T 0.79 deleterious_low_confidence(0) unknown(0) TCGA-FV-A4ZP-01 Y 15016810 15016810 C G DDX3Y 5'UTR 0.07 TCGA-FV-A4ZQ-01 10 113935464 113935464 C A GPAM Nonsense_Mutation p.G103* 0.36 TCGA-FV-A4ZQ-01 10 129904790 129904790 T A MKI67 Missense_Mutation p.R1772W 0.20 deleterious(0.01) possibly_damaging(0.855) TCGA-FV-A4ZQ-01 10 131676057 131676057 T - EBF3 Frame_Shift_Del p.N204Tfs*44 0.22 TCGA-FV-A4ZQ-01 10 134012417 134012417 C A DPYSL4 Nonsense_Mutation p.Y251* 0.44 TCGA-FV-A4ZQ-01 10 5488742 5488742 A T NET1 Intron 0.13 TCGA-FV-A4ZQ-01 10 73472984 73472984 G T C10orf105 3'UTR 0.27 TCGA-FV-A4ZQ-01 11 115085403 115085403 C A CADM1 Missense_Mutation p.D307Y 0.28 tolerated(0.12) possibly_damaging(0.635) TCGA-FV-A4ZQ-01 11 115375044 115375044 C A CADM1 Silent p.G23G 0.22 TCGA-FV-A4ZQ-01 11 1861085 1861085 G C TNNI2 Missense_Mutation p.E5D 0.22 tolerated(0.23) benign(0) TCGA-FV-A4ZQ-01 11 30032190 30032190 T C KCNA4 3'UTR 0.20 TCGA-FV-A4ZQ-01 11 48510880 48510880 T A OR4A47 Missense_Mutation p.M179K 0.23 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-FV-A4ZQ-01 11 66455336 66455336 C A SPTBN2 Intron 0.23 TCGA-FV-A4ZQ-01 11 66616778 66616778 C A PC Missense_Mutation p.A1071S 0.69 tolerated(0.22) benign(0) TCGA-FV-A4ZQ-01 11 78380651 78380651 G A TENM4 Missense_Mutation p.R2247W 0.34 deleterious(0) probably_damaging(0.998) TCGA-FV-A4ZQ-01 11 8474374 8474374 T C STK33 Missense_Mutation p.Y289C 0.05 deleterious(0.01) probably_damaging(1) TCGA-FV-A4ZQ-01 11 88330465 88330465 C T GRM5 Missense_Mutation p.V484I 0.33 tolerated(0.32) benign(0.045) TCGA-FV-A4ZQ-01 11 99426917 99426917 T G CNTN5 5'UTR 0.30 TCGA-FV-A4ZQ-01 12 118456923 118456923 C G RFC5 Missense_Mutation p.Q38E 0.26 tolerated(0.7) benign(0) TCGA-FV-A4ZQ-01 12 85441061 85441061 A G LRRIQ1 Missense_Mutation p.E164G 0.20 deleterious(0) probably_damaging(0.999) TCGA-FV-A4ZQ-01 13 25265114 25265114 C T ATP12A Missense_Mutation p.P271L 0.27 tolerated(0.67) benign(0) TCGA-FV-A4ZQ-01 13 36049768 36049768 T A MAB21L1 Missense_Mutation p.I170F 0.25 deleterious(0) probably_damaging(0.948) TCGA-FV-A4ZQ-01 13 42872928 42872928 A G AKAP11 Missense_Mutation p.N204S 0.39 tolerated(0.61) benign(0.025) TCGA-FV-A4ZQ-01 14 104153537 104153537 A G KLC1 Silent p.P590P 0.23 TCGA-FV-A4ZQ-01 14 106173860 106173860 G A IGHA1 Missense_Mutation p.P236L 0.33 deleterious(0.01) probably_damaging(0.992) TCGA-FV-A4ZQ-01 14 106322168 106322168 G T IGHM Missense_Mutation p.S52R 0.25 tolerated(0.18) benign(0.002) TCGA-FV-A4ZQ-01 14 57713485 57713485 G A EXOC5 Nonsense_Mutation p.Q72* 0.30 TCGA-FV-A4ZQ-01 14 72190403 72190403 C T SIPA1L1 Silent p.F1437F 0.32 TCGA-FV-A4ZQ-01 14 94936087 94936087 G T SERPINA9 Missense_Mutation p.P49T 0.34 tolerated(0.38) benign(0.004) TCGA-FV-A4ZQ-01 15 45007635 45007635 C T B2M Nonsense_Mutation p.Q28* 0.54 TCGA-FV-A4ZQ-01 15 55527010 55527010 T A RAB27A Silent p.T41T 0.16 TCGA-FV-A4ZQ-01 15 65623843 65623843 C T IGDCC3 Missense_Mutation p.V435M 0.23 tolerated(0.18) benign(0.152) TCGA-FV-A4ZQ-01 15 66679670 66679670 G T MAP2K1 5'UTR 0.50 TCGA-FV-A4ZQ-01 16 396951 396951 C A AXIN1 Silent p.V25V 0.39 TCGA-FV-A4ZQ-01 16 58147789 58147789 G C C16orf80 3'UTR 0.58 TCGA-FV-A4ZQ-01 16 67877084 67877084 G T THAP11 Silent p.S209S 0.22 TCGA-FV-A4ZQ-01 16 67997347 67997347 C A SLC12A4 Intron 0.21 TCGA-FV-A4ZQ-01 16 75263466 75263466 C A BCAR1 Missense_Mutation p.E898D 0.44 tolerated(0.72) probably_damaging(0.986) TCGA-FV-A4ZQ-01 16 87788861 87788861 C T KLHDC4 Missense_Mutation p.R103K 0.28 tolerated(0.83) benign(0.013) TCGA-FV-A4ZQ-01 17 28022497 28022497 G C SSH2 Missense_Mutation p.P86A 0.55 tolerated(0.07) possibly_damaging(0.502) TCGA-FV-A4ZQ-01 17 64210647 64210647 A G APOH Silent p.N302N 0.19 TCGA-FV-A4ZQ-01 17 66038335 66038335 A G KPNA2 Missense_Mutation p.N146S 0.69 deleterious(0) benign(0.198) TCGA-FV-A4ZQ-01 17 74006234 74006234 C G EVPL Missense_Mutation p.E1018Q 0.62 deleterious(0.03) probably_damaging(0.998) TCGA-FV-A4ZQ-01 17 7577141 7577141 C A TP53 Missense_Mutation p.G266V 0.51 deleterious(0) probably_damaging(0.999) TCGA-FV-A4ZQ-01 19 12504023 12543797 19:12504023-12543797 - CTD-3105H18.16 large deletion p.X44_splice 0.23 TCGA-FV-A4ZQ-01 19 17947999 17947999 C T JAK3 Silent p.L575L 0.20 TCGA-FV-A4ZQ-01 19 3623771 3623771 C A CACTIN Missense_Mutation p.G186V 0.35 deleterious(0) probably_damaging(0.999) TCGA-FV-A4ZQ-01 19 43699214 43699214 A G PSG4 Silent p.P307P 0.17 TCGA-FV-A4ZQ-01 19 55047101 55047101 G T KIR3DX1 Missense_Mutation p.V216L 0.16 tolerated(0.29) probably_damaging(0.936) TCGA-FV-A4ZQ-01 19 55598089 55598089 C G EPS8L1 Missense_Mutation p.F595L 0.15 tolerated(0.57) benign(0.139) TCGA-FV-A4ZQ-01 1 1139782 1139782 G T TNFRSF18 Missense_Mutation p.T132K 0.25 deleterious_low_confidence(0) possibly_damaging(0.733) TCGA-FV-A4ZQ-01 1 1372313 1372313 C T VWA1 Missense_Mutation p.P27L 0.27 tolerated(0.07) benign(0.004) TCGA-FV-A4ZQ-01 1 13802273 13802273 G T LRRC38 3'UTR 0.19 TCGA-FV-A4ZQ-01 1 156785887 156785887 C T SH2D2A Splice_Site p.X12_splice 0.31 TCGA-FV-A4ZQ-01 1 204937427 204937427 G A NFASC Missense_Mutation p.A253T 0.30 tolerated(0.6) benign(0.273) TCGA-FV-A4ZQ-01 1 216062335 216062335 G A USH2A Silent p.T2552T 0.36 TCGA-FV-A4ZQ-01 1 220088994 220088994 C A SLC30A10 Missense_Mutation p.A419S 0.28 tolerated(0.23) benign(0.01) TCGA-FV-A4ZQ-01 1 22084166 22084166 C A USP48 Missense_Mutation p.R82M 0.29 deleterious(0) possibly_damaging(0.482) TCGA-FV-A4ZQ-01 1 67242056 67242056 C T TCTEX1D1 Silent p.L102L 0.35 TCGA-FV-A4ZQ-01 20 41101120 41101120 G A PTPRT Silent p.Y412Y 0.09 TCGA-FV-A4ZQ-01 20 61512904 61512904 C A DIDO1 Silent p.A1468A 0.45 TCGA-FV-A4ZQ-01 20 62591366 62591366 T C ZNF512B Missense_Mutation p.T852A 0.18 tolerated(0.08) benign(0) TCGA-FV-A4ZQ-01 20 62708207 62708207 T C RGS19 Intron 0.18 TCGA-FV-A4ZQ-01 21 45553649 45553649 G A C21orf33 Missense_Mutation p.G24S 0.58 tolerated_low_confidence(0.54) benign(0.002) TCGA-FV-A4ZQ-01 22 21351518 21351518 C T LZTR1 Intron 0.29 TCGA-FV-A4ZQ-01 22 28193384 28193384 T A MN1 Missense_Mutation p.S1050C 0.31 possibly_damaging(0.893) TCGA-FV-A4ZQ-01 22 39709288 39709288 C A RPL3 Missense_Mutation p.A359S 0.24 tolerated(0.11) benign(0.004) TCGA-FV-A4ZQ-01 22 46792623 46792623 C A CELSR1 Missense_Mutation p.V1908L 0.45 tolerated(0.06) benign(0.016) TCGA-FV-A4ZQ-01 22 47857372 47857372 A G LL22NC03-75H12.2 3'UTR 0.34 TCGA-FV-A4ZQ-01 2 102480445 102480445 A G MAP4K4 Intron 0.29 TCGA-FV-A4ZQ-01 2 171700595 171700595 C A GAD1 Missense_Mutation p.Q227K 0.24 tolerated(0.4) benign(0.24) TCGA-FV-A4ZQ-01 2 17696823 17696823 C A RAD51AP2 Nonsense_Mutation p.E954* 0.36 TCGA-FV-A4ZQ-01 2 20490545 20490545 G C PUM2 Missense_Mutation p.R387G 0.34 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-FV-A4ZQ-01 2 213914450 213914450 G A IKZF2 Silent p.L187L 0.36 TCGA-FV-A4ZQ-01 2 214354720 214354720 C T SPAG16 Missense_Mutation p.P326S 0.33 tolerated(0.11) benign(0.39) TCGA-FV-A4ZQ-01 2 220348819 220348819 C T SPEG Nonsense_Mutation p.Q2212* 0.39 TCGA-FV-A4ZQ-01 2 232209780 232209780 G A ARMC9 Missense_Mutation p.G658S 0.06 tolerated_low_confidence(0.96) benign(0.049) TCGA-FV-A4ZQ-01 2 37580079 37580079 G T QPCT Splice_Site p.X89_splice 0.45 TCGA-FV-A4ZQ-01 2 54858501 54858501 A G SPTBN1 Missense_Mutation p.N1106S 0.30 tolerated(0.25) benign(0.004) TCGA-FV-A4ZQ-01 2 61324923 61324923 G T KIAA1841 Missense_Mutation p.G434V 0.26 tolerated(0.06) possibly_damaging(0.881) TCGA-FV-A4ZQ-01 2 69642381 69642381 T A NFU1 Silent p.T140T 0.24 TCGA-FV-A4ZQ-01 2 86709144 86709144 G A KDM3A Silent p.T868T 0.28 TCGA-FV-A4ZQ-01 2 97039143 97039143 G T NCAPH 3'UTR 0.26 TCGA-FV-A4ZQ-01 3 108204062 108204062 G T MYH15 Silent p.I350I 0.55 TCGA-FV-A4ZQ-01 3 179096370 179096370 T C MFN1 Intron 0.13 TCGA-FV-A4ZQ-01 3 183209982 183209982 C G KLHL6 Silent p.P533P 0.79 TCGA-FV-A4ZQ-01 3 41266101 41266101 C G CTNNB1 Missense_Mutation p.S33C 0.25 deleterious(0) probably_damaging(0.987) TCGA-FV-A4ZQ-01 4 103590162 103590162 A G MANBA Silent p.D425D 0.27 TCGA-FV-A4ZQ-01 4 153253841 153253841 G T FBXW7 Missense_Mutation p.P298T 0.29 deleterious(0.04) probably_damaging(0.983) TCGA-FV-A4ZQ-01 4 175897585 175897585 T A ADAM29 Missense_Mutation p.F303L 0.30 tolerated(0.29) benign(0.003) TCGA-FV-A4ZQ-01 4 39116973 39116973 T - KLHL5 Intron 0.16 TCGA-FV-A4ZQ-01 4 79166410 79166410 C T FRAS1 Silent p.A80A 0.35 TCGA-FV-A4ZQ-01 4 89318063 89318063 A G HERC6 Silent p.P316P 0.33 TCGA-FV-A4ZQ-01 5 140433269 140433269 C A PCDHB1 Missense_Mutation p.N738K 0.26 deleterious(0) benign(0.162) TCGA-FV-A4ZQ-01 5 82937472 82937472 C A HAPLN1 Missense_Mutation p.R303L 0.25 deleterious(0.01) possibly_damaging(0.828) TCGA-FV-A4ZQ-01 6 106968959 106968959 G T AIM1 Silent p.P884P 0.29 TCGA-FV-A4ZQ-01 6 110752455 110752455 G T SLC22A16 Missense_Mutation p.S480R 0.52 deleterious(0) probably_damaging(0.997) TCGA-FV-A4ZQ-01 6 170065609 170065609 C A WDR27 Missense_Mutation p.Q252H 0.20 deleterious(0.04) probably_damaging(0.992) TCGA-FV-A4ZQ-01 6 170159125 170159125 G T ERMARD Missense_Mutation p.W190L 0.27 deleterious(0) probably_damaging(1) TCGA-FV-A4ZQ-01 6 17637675 17637675 T C NUP153 Missense_Mutation p.T725A 0.61 deleterious(0.04) benign(0.395) TCGA-FV-A4ZQ-01 6 43322734 43322734 C A ZNF318 Nonsense_Mutation p.G780* 0.21 TCGA-FV-A4ZQ-01 6 96653108 96653108 C T FUT9 3'UTR 0.32 TCGA-FV-A4ZQ-01 7 117176688 117176688 G T CFTR Missense_Mutation p.W277L 0.11 deleterious(0) probably_damaging(0.997) TCGA-FV-A4ZQ-01 8 113651094 113651094 G C CSMD3 Missense_Mutation p.D1119E 0.63 deleterious(0.01) possibly_damaging(0.9) TCGA-FV-A4ZQ-01 8 116427073 116427073 A G TRPS1 Silent p.G1021G 0.13 TCGA-FV-A4ZQ-01 8 144991598 144991598 A C PLEC Missense_Mutation p.S4268A 0.14 probably_damaging(0.992) TCGA-FV-A4ZQ-01 8 73921159 73921159 G C TERF1 Missense_Mutation p.R13P 0.15 deleterious_low_confidence(0.03) probably_damaging(0.93) TCGA-FV-A4ZQ-01 9 112004035 112004035 G A EPB41L4B Intron 0.33 TCGA-FV-A4ZQ-01 9 112694224 112694224 T A PALM2-AKAP2 Missense_Mutation p.S138T 0.40 tolerated(0.2) benign(0.201) TCGA-FV-A4ZQ-01 9 34521798 34521798 C T ENHO 5'UTR 0.26 TCGA-FV-A4ZQ-01 9 5072525 5072525 A C JAK2 Missense_Mutation p.I559L 0.26 deleterious(0.03) benign(0.107) TCGA-FV-A4ZQ-01 9 95155381 95155381 A G OGN Silent p.D138D 0.38 TCGA-FV-A4ZQ-01 X 145078746 145078746 T A MIR892B RNA 0.61 TCGA-FV-A4ZQ-01 X 57622153 57622153 A G ZXDB 3'UTR 0.62 TCGA-G3-A25S-01 10 101802222 101802222 C T CPN1 Missense_Mutation p.E447K 0.38 tolerated(0.43) benign(0.002) TCGA-G3-A25S-01 10 112723994 112723994 T C SHOC2 5'UTR 0.50 TCGA-G3-A25S-01 10 135099037 135099037 C A TUBGCP2 Silent p.T634T 0.38 TCGA-G3-A25S-01 10 27389068 27389068 T C ANKRD26 Missense_Mutation p.Q63R 0.11 tolerated(0.14) benign(0.017) TCGA-G3-A25S-01 10 70509281 70509281 T C CCAR1 Silent p.S319S 0.20 TCGA-G3-A25S-01 10 71175879 71175879 G A TACR2 Silent p.V67V 0.33 TCGA-G3-A25S-01 10 75408416 75408416 C A SYNPO2L Nonsense_Mutation p.E332* 0.10 TCGA-G3-A25S-01 10 75548453 75548453 G A ZSWIM8 Silent p.E78E 0.12 TCGA-G3-A25S-01 10 75567716 75567716 A G NDST2 Missense_Mutation p.L144P 0.09 tolerated(0.14) probably_damaging(0.997) TCGA-G3-A25S-01 10 90695109 90695109 C A ACTA2 Silent p.P335P 0.09 TCGA-G3-A25S-01 11 1026952 1026952 C T MUC6 Missense_Mutation p.G795S 0.35 unknown(0) TCGA-G3-A25S-01 11 104820474 104820474 T C CASP4 Missense_Mutation p.T193A 0.20 tolerated(1) benign(0) TCGA-G3-A25S-01 11 105782639 105782639 G T GRIA4 Intron 0.41 TCGA-G3-A25S-01 11 105925003 105925003 G C KBTBD3 Missense_Mutation p.S138C 0.33 tolerated(0.1) possibly_damaging(0.58) TCGA-G3-A25S-01 11 107375536 107375536 C A ALKBH8 Nonsense_Mutation p.G615* 0.09 TCGA-G3-A25S-01 11 108121612 108121612 A G ATM Missense_Mutation p.S474G 0.10 tolerated(0.21) benign(0.001) TCGA-G3-A25S-01 11 124310110 124310110 C T OR8B8 Missense_Mutation p.S291N 0.47 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-G3-A25S-01 11 124310343 124310343 G T OR8B8 Silent p.T213T 0.45 TCGA-G3-A25S-01 11 126162958 126162958 A G TIRAP Silent p.L218L 0.25 TCGA-G3-A25S-01 11 17464837 17464837 A G ABCC8 Missense_Mutation p.L452P 0.09 deleterious(0) probably_damaging(0.998) TCGA-G3-A25S-01 11 35684743 35684743 G T TRIM44 Silent p.G28G 0.38 TCGA-G3-A25S-01 11 46406927 46406927 C T CHRM4 Missense_Mutation p.R394Q 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-G3-A25S-01 11 47308084 47308084 A G MADD Silent p.K884K 0.09 TCGA-G3-A25S-01 11 57080520 57080520 G C TNKS1BP1 Missense_Mutation p.P548A 0.17 tolerated(0.1) benign(0.062) TCGA-G3-A25S-01 11 57080609 57080609 G A TNKS1BP1 Missense_Mutation p.S518F 0.24 deleterious(0) probably_damaging(0.943) TCGA-G3-A25S-01 11 57080662 57080662 G T TNKS1BP1 Silent p.I500I 0.25 TCGA-G3-A25S-01 11 57080675 57080675 G A TNKS1BP1 Missense_Mutation p.P496L 0.21 deleterious(0) probably_damaging(1) TCGA-G3-A25S-01 11 66050758 66050758 T G CNIH2 Nonsense_Mutation p.Y117* 0.61 TCGA-G3-A25S-01 11 69457804 69457804 C T CCND1 Silent p.C68C 0.11 TCGA-G3-A25S-01 11 73022229 73022229 C T ARHGEF17 Missense_Mutation p.P849L 0.29 deleterious_low_confidence(0) possibly_damaging(0.63) TCGA-G3-A25S-01 11 74911286 74911286 C T SLCO2B1 Silent p.C539C 0.09 TCGA-G3-A25S-01 12 124189231 124189231 A G TCTN2 Missense_Mutation p.T589A 0.10 tolerated(0.37) benign(0.015) TCGA-G3-A25S-01 12 124257438 124257438 C T DNAH10 Missense_Mutation p.P91S 0.53 benign(0.009) TCGA-G3-A25S-01 12 124257449 124257449 C T DNAH10 Silent p.F94F 0.55 TCGA-G3-A25S-01 12 126135429 126135429 A G TMEM132B Missense_Mutation p.E610G 0.10 deleterious(0.05) possibly_damaging(0.904) TCGA-G3-A25S-01 12 28637055 28637055 G T CCDC91 Missense_Mutation p.R391I 0.08 deleterious(0) possibly_damaging(0.655) TCGA-G3-A25S-01 12 2944113 2944113 G A NRIP2 Missense_Mutation p.P13S 0.21 tolerated_low_confidence(0.11) benign(0.008) TCGA-G3-A25S-01 12 7064833 7064833 A G PTPN6 Missense_Mutation p.K253R 0.11 deleterious(0.01) benign(0.004) TCGA-G3-A25S-01 13 111082761 111082761 A G COL4A2 Missense_Mutation p.E188G 0.35 possibly_damaging(0.841) TCGA-G3-A25S-01 13 32931936 32931936 T C BRCA2 Missense_Mutation p.S2559P 0.12 deleterious(0.02) probably_damaging(0.973) TCGA-G3-A25S-01 13 36229035 36229036 - C NBEA Frame_Shift_Ins p.D2673Rfs*17 0.42 TCGA-G3-A25S-01 13 39265055 39265055 G T FREM2 Nonsense_Mutation p.E1192* 0.80 TCGA-G3-A25S-01 13 46725197 46725197 C A LCP1 Missense_Mutation p.L252F 0.10 deleterious(0) probably_damaging(0.988) TCGA-G3-A25S-01 13 50205138 50205138 C T ARL11 Silent p.A185A 0.09 TCGA-G3-A25S-01 13 72440929 72440929 G T DACH1 5'UTR 0.27 TCGA-G3-A25S-01 14 105175662 105175662 C T INF2 Missense_Mutation p.T665I 0.13 deleterious(0.01) unknown(0) TCGA-G3-A25S-01 14 24844908 24844908 T A NFATC4 Missense_Mutation p.L702Q 0.30 tolerated(0.26) benign(0.417) TCGA-G3-A25S-01 14 57088308 57088308 C G TMEM260 Missense_Mutation p.S429C 0.15 deleterious(0) probably_damaging(0.995) TCGA-G3-A25S-01 14 88852147 88852147 T C SPATA7 5'UTR 0.46 TCGA-G3-A25S-01 15 48495124 48495124 A G CTXN2 3'UTR 0.18 TCGA-G3-A25S-01 15 59470655 59470655 G T MYO1E Silent p.V662V 0.10 TCGA-G3-A25S-01 15 84651559 84651559 T C ADAMTSL3 Missense_Mutation p.L1060S 0.44 tolerated(0.36) benign(0.091) TCGA-G3-A25S-01 15 86313785 86313785 C T KLHL25 Intron 0.08 TCGA-G3-A25S-01 15 90023512 90023512 G T RHCG Nonsense_Mutation p.S217* 0.39 TCGA-G3-A25S-01 15 91020941 91020941 C T IQGAP1 Missense_Mutation p.T1050M 0.22 deleterious(0.04) possibly_damaging(0.798) TCGA-G3-A25S-01 16 19049310 19049310 G T TMC7 Missense_Mutation p.G374W 0.52 deleterious(0.01) possibly_damaging(0.541) TCGA-G3-A25S-01 16 31193931 31193931 G C FUS Missense_Mutation p.D46H 0.08 deleterious(0.01) unknown(0) TCGA-G3-A25S-01 16 58568277 58568277 T C CNOT1 Missense_Mutation p.K1890R 0.15 tolerated(0.12) benign(0.127) TCGA-G3-A25S-01 16 83828659 83828659 A G CDH13 3'UTR 0.12 TCGA-G3-A25S-01 16 87868106 87868106 C A SLC7A5 Missense_Mutation p.G461V 0.08 deleterious(0) probably_damaging(0.997) TCGA-G3-A25S-01 16 88949122 88949122 C T CBFA2T3 Missense_Mutation p.E389K 0.15 deleterious(0.02) possibly_damaging(0.507) TCGA-G3-A25S-01 17 25944438 25944438 T C KSR1 Missense_Mutation p.F756L 0.16 tolerated(0.27) probably_damaging(0.913) TCGA-G3-A25S-01 17 30380427 30380427 T G LRRC37B 3'UTR 0.89 TCGA-G3-A25S-01 17 30666909 30666909 C T C17orf75 Silent p.L90L 0.11 TCGA-G3-A25S-01 17 6978366 6978366 A G CLEC10A 3'UTR 0.14 TCGA-G3-A25S-01 17 7124266 7124266 T C ACADVL Silent p.N145N 0.19 TCGA-G3-A25S-01 17 7221959 7221959 C T NEURL4 Missense_Mutation p.C1240Y 0.08 deleterious(0.01) benign(0.254) TCGA-G3-A25S-01 17 73851333 73851333 T C WBP2 Missense_Mutation p.N16D 0.93 tolerated(0.1) benign(0.05) TCGA-G3-A25S-01 18 56415027 56415027 G A MALT1 Missense_Mutation p.E810K 0.44 deleterious_low_confidence(0.01) benign(0.297) TCGA-G3-A25S-01 18 63525062 63525062 G A CDH7 Missense_Mutation p.D416N 0.24 deleterious(0.03) probably_damaging(0.981) TCGA-G3-A25S-01 18 6975955 6975955 T A LAMA1 Missense_Mutation p.Y2157F 0.24 tolerated(0.06) possibly_damaging(0.866) TCGA-G3-A25S-01 18 72185845 72185845 T A CNDP2 Missense_Mutation p.Y394N 0.19 deleterious(0) probably_damaging(0.999) TCGA-G3-A25S-01 18 742994 742994 T C YES1 Silent p.R328R 0.51 TCGA-G3-A25S-01 18 9859227 9859227 C A RAB31 Missense_Mutation p.R165S 0.29 deleterious(0.01) benign(0.135) TCGA-G3-A25S-01 19 15567317 15567317 G T RASAL3 Silent p.T524T 0.10 TCGA-G3-A25S-01 19 3905457 3905457 C T ATCAY Silent p.N54N 0.22 TCGA-G3-A25S-01 19 4097279 4097280 - GTTCACAA MAP2K2 Nonsense_Mutation p.E328Lfs*2 0.47 TCGA-G3-A25S-01 19 41009905 41009905 G C SPTBN4 Missense_Mutation p.D511H 0.63 tolerated(0.06) possibly_damaging(0.808) TCGA-G3-A25S-01 19 43233951 43233951 G T PSG3 Missense_Mutation p.P323T 0.08 tolerated(0.83) possibly_damaging(0.895) TCGA-G3-A25S-01 19 49547421 49547421 C - CGB5 5'UTR 0.18 TCGA-G3-A25S-01 19 50188212 50188212 G A PRMT1 Missense_Mutation p.C226Y 0.10 deleterious(0.05) benign(0.129) TCGA-G3-A25S-01 19 58232430 58232430 C T ZNF671 Missense_Mutation p.E342K 0.19 tolerated(0.05) probably_damaging(0.93) TCGA-G3-A25S-01 1 151679702 151679702 C T CELF3 Missense_Mutation p.G281S 0.14 tolerated(0.13) benign(0.138) TCGA-G3-A25S-01 1 164768969 164768969 C T PBX1 Missense_Mutation p.L182F 0.20 deleterious(0) probably_damaging(1) TCGA-G3-A25S-01 1 165376062 165376062 C T RXRG Missense_Mutation p.E411K 0.12 deleterious(0.03) benign(0.075) TCGA-G3-A25S-01 1 173878764 173878764 C T SERPINC1 Missense_Mutation p.G360D 0.14 tolerated(0.13) benign(0.13) TCGA-G3-A25S-01 1 17563890 17563890 G A PADI1 Silent p.S465S 0.68 TCGA-G3-A25S-01 1 17609432 17609432 G A PADI3 Missense_Mutation p.R618Q 0.41 tolerated(0.1) benign(0.05) TCGA-G3-A25S-01 1 182852382 182852382 A T DHX9 Missense_Mutation p.E1008V 0.54 deleterious(0.04) probably_damaging(0.946) TCGA-G3-A25S-01 1 207224106 207224106 G A YOD1 Silent p.L90L 0.08 TCGA-G3-A25S-01 1 207641906 207641906 C T CR2 Silent p.I160I 0.56 TCGA-G3-A25S-01 1 209878227 209878227 G T HSD11B1 Intron 0.21 TCGA-G3-A25S-01 1 233397906 233397906 T C PCNXL2 Missense_Mutation p.N122S 0.12 tolerated(0.33) benign(0.035) TCGA-G3-A25S-01 1 242451667 242451667 A T PLD5 Nonsense_Mutation p.C164* 0.11 TCGA-G3-A25S-01 1 34663019 34663019 G T C1orf94 Nonsense_Mutation p.E172* 0.30 TCGA-G3-A25S-01 1 39946609 39946609 T G MACF1 Intron 0.22 TCGA-G3-A25S-01 1 41215259 41215259 A G NFYC Silent p.E64E 0.25 TCGA-G3-A25S-01 1 9782105 9782105 C T PIK3CD Nonsense_Mutation p.Q710* 0.10 TCGA-G3-A25S-01 20 30897746 30897746 A - KIF3B Frame_Shift_Del p.T56Pfs*90 0.18 TCGA-G3-A25S-01 20 31021262 31021262 A G ASXL1 Missense_Mutation p.R421G 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-G3-A25S-01 20 34022378 34022378 C T GDF5 Missense_Mutation p.D279N 0.24 deleterious(0.01) probably_damaging(0.945) TCGA-G3-A25S-01 20 42143656 42143656 C - L3MBTL1 Frame_Shift_Del p.Q150Rfs*50 0.28 TCGA-G3-A25S-01 20 55212882 55212882 G A TFAP2C Missense_Mutation p.C389Y 0.11 deleterious(0.02) possibly_damaging(0.636) TCGA-G3-A25S-01 20 57767023 57767023 C A ZNF831 Silent p.R317R 0.73 TCGA-G3-A25S-01 20 60886538 60886538 A G LAMA5 Silent p.N3287N 0.36 TCGA-G3-A25S-01 20 8626827 8626827 G A PLCB1 Missense_Mutation p.A155T 0.12 tolerated(0.28) benign(0.131) TCGA-G3-A25S-01 21 17197365 17197365 A G USP25 Missense_Mutation p.Q430R 0.26 deleterious(0.03) benign(0.227) TCGA-G3-A25S-01 21 38538901 38538901 A G TTC3 Missense_Mutation p.Q1462R 0.32 tolerated(1) benign(0.002) TCGA-G3-A25S-01 21 45397993 45397993 C G AGPAT3 Nonsense_Mutation p.Y278* 0.44 TCGA-G3-A25S-01 22 28504014 28504014 G A TTC28 Missense_Mutation p.R607W 0.19 deleterious(0) probably_damaging(1) TCGA-G3-A25S-01 22 29693885 29693885 C A EWSR1 Silent p.R460R 0.14 TCGA-G3-A25S-01 22 42538036 42538036 C A NDUFA6-AS1 3'Flank 0.31 TCGA-G3-A25S-01 2 109383262 109383262 A G RANBP2 Missense_Mutation p.I2089M 0.09 deleterious(0) probably_damaging(1) TCGA-G3-A25S-01 2 168097234 168097234 G T XIRP2 Missense_Mutation p.V344F 0.44 possibly_damaging(0.885) TCGA-G3-A25S-01 2 183604933 183604934 - A DNAJC10 Intron 0.39 TCGA-G3-A25S-01 2 204306126 204306126 T C RAPH1 Missense_Mutation p.E596G 0.10 benign(0.196) TCGA-G3-A25S-01 2 216238044 216238044 C G FN1 Splice_Site p.X2083_splice 0.14 TCGA-G3-A25S-01 2 241492433 241492433 C T ANKMY1 Silent p.L37L 0.10 TCGA-G3-A25S-01 2 71778194 71778194 C A DYSF Missense_Mutation p.P534T 0.26 deleterious(0) probably_damaging(1) TCGA-G3-A25S-01 2 74901762 74901762 G C SEMA4F Silent p.G320G 0.31 TCGA-G3-A25S-01 2 79314699 79314699 G T REG1B Missense_Mutation p.L14M 0.29 deleterious(0.01) possibly_damaging(0.665) TCGA-G3-A25S-01 2 84852030 84852030 G T DNAH6 Missense_Mutation p.R1453L 0.39 deleterious(0) probably_damaging(0.987) TCGA-G3-A25S-01 3 111764780 111764780 G A TMPRSS7 Silent p.V114V 0.38 TCGA-G3-A25S-01 3 118621409 118621409 A G IGSF11 Silent p.P418P 0.08 TCGA-G3-A25S-01 3 123665744 123665744 A T CCDC14 Missense_Mutation p.D376E 0.15 tolerated(0.26) possibly_damaging(0.866) TCGA-G3-A25S-01 3 129155490 129155490 T A MBD4 Missense_Mutation p.I333L 0.16 tolerated(0.78) benign(0.013) TCGA-G3-A25S-01 3 130289820 130289820 G A COL6A6 Missense_Mutation p.A854T 0.18 deleterious(0) possibly_damaging(0.825) TCGA-G3-A25S-01 3 173322666 173322666 G T NLGN1 Missense_Mutation p.R93L 0.42 tolerated(1) benign(0.109) TCGA-G3-A25S-01 3 173525610 173525610 C A NLGN1 Missense_Mutation p.L212I 0.53 tolerated(0.06) probably_damaging(0.977) TCGA-G3-A25S-01 3 182989773 182989773 A T B3GNT5 3'UTR 0.17 TCGA-G3-A25S-01 3 186505444 186505444 T G EIF4A2 Intron 0.19 TCGA-G3-A25S-01 3 196229935 196229935 T C RNF168 Missense_Mutation p.K37R 0.10 deleterious(0.05) benign(0.006) TCGA-G3-A25S-01 3 31705616 31705616 G A OSBPL10 Silent p.R735R 0.19 TCGA-G3-A25S-01 3 3186326 3186329 AGTT - TRNT1 Frame_Shift_Del p.V181Dfs*18 0.19 TCGA-G3-A25S-01 3 423911 423911 G T CHL1 Missense_Mutation p.R642S 0.37 deleterious(0) probably_damaging(0.944) TCGA-G3-A25S-01 3 49694892 49694892 C T BSN Missense_Mutation p.R2635C 0.20 unknown(0) TCGA-G3-A25S-01 3 49753579 49753579 G C RNF123 Silent p.L1128L 0.18 TCGA-G3-A25S-01 3 77695323 77695323 A T ROBO2 3'UTR 0.41 TCGA-G3-A25S-01 3 9870684 9870685 GA - TTLL3 Frame_Shift_Del p.N531Lfs*16 0.29 TCGA-G3-A25S-01 4 146859553 146859553 T A ZNF827 Missense_Mutation p.R3W 0.70 deleterious_low_confidence(0) benign(0.18) TCGA-G3-A25S-01 4 15839760 15839760 T C CD38 Missense_Mutation p.S211P 0.66 deleterious(0) probably_damaging(1) TCGA-G3-A25S-01 4 186425735 186425735 G C PDLIM3 Missense_Mutation p.R267G 0.88 deleterious(0) probably_damaging(0.984) TCGA-G3-A25S-01 4 1957733 1957733 A G WHSC1 Missense_Mutation p.H900R 0.15 deleterious(0) probably_damaging(0.983) TCGA-G3-A25S-01 4 40440519 40440519 A G RBM47 Missense_Mutation p.L131P 0.11 deleterious(0) probably_damaging(0.978) TCGA-G3-A25S-01 4 42895631 42895631 C T GRXCR1 Silent p.G116G 0.33 TCGA-G3-A25S-01 4 727952 727952 G A PCGF3 Intron 0.39 TCGA-G3-A25S-01 4 74283297 74283298 - T ALB Frame_Shift_Ins p.V448Cfs*16 0.52 TCGA-G3-A25S-01 4 74283386 74283387 TG - ALB Splice_Site p.X476_splice 0.53 TCGA-G3-A25S-01 5 118485268 118485268 C T DMXL1 Missense_Mutation p.P1249L 0.60 tolerated(0.4) benign(0.002) TCGA-G3-A25S-01 5 120022233 120022233 C T PRR16 Silent p.G225G 0.24 TCGA-G3-A25S-01 5 127730952 127730952 A G FBN2 Missense_Mutation p.M365T 0.12 tolerated(1) benign(0) TCGA-G3-A25S-01 5 132585166 132585166 C T FSTL4 Missense_Mutation p.R277K 0.14 tolerated(0.08) possibly_damaging(0.536) TCGA-G3-A25S-01 5 138764241 138764241 G T DNAJC18 Missense_Mutation p.T120K 0.31 deleterious(0) probably_damaging(0.94) TCGA-G3-A25S-01 5 147718126 147718126 G T SPINK9 Missense_Mutation p.G58V 0.28 deleterious(0) probably_damaging(0.966) TCGA-G3-A25S-01 5 35618118 35618118 C T SPEF2 Nonsense_Mutation p.Q7* 0.12 TCGA-G3-A25S-01 5 43161948 43161948 T C ZNF131 Silent p.T289T 0.53 TCGA-G3-A25S-01 5 49695027 49695027 G T EMB 3'UTR 0.23 TCGA-G3-A25S-01 5 95226823 95226823 C A ELL2 Missense_Mutation p.G582V 0.60 deleterious(0) probably_damaging(0.991) TCGA-G3-A25S-01 6 160206479 160206479 G C TCP1 Missense_Mutation p.L143V 0.33 tolerated(0.06) benign(0.217) TCGA-G3-A25S-01 6 22294684 22294684 A T PRL Missense_Mutation p.L53Q 0.20 tolerated(0.07) probably_damaging(0.997) TCGA-G3-A25S-01 6 2685624 2685624 C T MYLK4 Missense_Mutation p.E151K 0.25 deleterious(0) probably_damaging(0.996) TCGA-G3-A25S-01 6 30681089 30681089 C T MDC1 Silent p.P210P 0.14 TCGA-G3-A25S-01 6 36651880 36651880 T G CDKN1A Translation_Start_Site p.M1? 0.95 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-G3-A25S-01 6 36651881 36651881 G T CDKN1A Translation_Start_Site p.M1? 0.93 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-G3-A25S-01 6 43274043 43274043 C T CRIP3 Missense_Mutation p.V137M 0.94 deleterious(0.01) possibly_damaging(0.548) TCGA-G3-A25S-01 6 43274045 43274045 T A CRIP3 Missense_Mutation p.K136M 0.93 deleterious(0) possibly_damaging(0.785) TCGA-G3-A25S-01 6 43274046 43274046 T C CRIP3 Missense_Mutation p.K136E 0.95 deleterious(0.03) benign(0.226) TCGA-G3-A25S-01 6 47681793 47681793 G A GPR115 Missense_Mutation p.G271E 0.25 deleterious(0.01) probably_damaging(0.965) TCGA-G3-A25S-01 6 51824795 51824795 T A PKHD1 Missense_Mutation p.R1927S 0.10 deleterious(0.01) possibly_damaging(0.714) TCGA-G3-A25S-01 6 592543 592543 C T EXOC2 Missense_Mutation p.C373Y 0.15 deleterious(0) probably_damaging(0.962) TCGA-G3-A25S-01 6 78172410 78172410 G A HTR1B Silent p.S237S 0.80 TCGA-G3-A25S-01 6 97246970 97246970 A G GPR63 Missense_Mutation p.L213S 0.62 tolerated(0.55) benign(0.124) TCGA-G3-A25S-01 7 14216380 14216380 A - DGKB Intron 0.11 TCGA-G3-A25S-01 7 155094019 155094019 G A INSIG1 Missense_Mutation p.G199D 0.21 deleterious(0) probably_damaging(1) TCGA-G3-A25S-01 7 27182734 27182734 C A HOXA5 Nonsense_Mutation p.E165* 0.10 TCGA-G3-A25S-01 7 4874647 4874647 G A RADIL Missense_Mutation p.T336I 0.63 deleterious(0.02) benign(0.01) TCGA-G3-A25S-01 7 50514900 50514900 G A FIGNL1 Missense_Mutation p.P29L 0.26 deleterious(0) benign(0) TCGA-G3-A25S-01 7 56119613 56119613 C A CCT6A Silent p.I24I 0.11 TCGA-G3-A25S-01 7 6554130 6554130 G T GRID2IP Nonsense_Mutation p.Y433* 0.46 TCGA-G3-A25S-01 7 72849142 72849142 T C FZD9 Missense_Mutation p.F269L 0.10 tolerated(0.09) probably_damaging(0.987) TCGA-G3-A25S-01 7 83590805 83590805 C A SEMA3A Missense_Mutation p.R733L 0.42 tolerated(0.07) possibly_damaging(0.604) TCGA-G3-A25S-01 7 99474046 99474046 A G OR2AE1 Missense_Mutation p.I204T 0.29 deleterious(0.03) benign(0.065) TCGA-G3-A25S-01 7 99697309 99697309 G C MCM7 Missense_Mutation p.P60R 0.58 tolerated(0.37) benign(0.211) TCGA-G3-A25S-01 8 143958298 143958298 C T CYP11B1 Missense_Mutation p.S200N 0.08 deleterious(0) probably_damaging(0.997) TCGA-G3-A25S-01 8 2999990 2999990 G T CSMD1 Missense_Mutation p.Q2080K 0.12 probably_damaging(0.992) TCGA-G3-A25S-01 8 92301399 92301399 G T SLC26A7 Missense_Mutation p.V77L 0.22 deleterious(0) probably_damaging(0.943) TCGA-G3-A25S-01 9 125674263 125674263 T C ZBTB6 Missense_Mutation p.N30S 0.86 tolerated(0.21) probably_damaging(0.996) TCGA-G3-A25S-01 9 130550943 130550943 G T CDK9 Missense_Mutation p.S242I 0.80 tolerated(0.46) probably_damaging(0.934) TCGA-G3-A25S-01 9 134004676 134004676 A T NUP214 Missense_Mutation p.Q135L 0.08 unknown(0) TCGA-G3-A25S-01 9 135982063 135982063 G T RALGDS Missense_Mutation p.R496S 0.08 deleterious(0) unknown(0) TCGA-G3-A25S-01 9 140137668 140137668 T C TUBB4B Missense_Mutation p.V333A 0.33 deleterious_low_confidence(0.02) benign(0.08) TCGA-G3-A25S-01 9 27950383 27950383 A T LINGO2 Missense_Mutation p.V96E 0.10 deleterious(0) probably_damaging(0.983) TCGA-G3-A25S-01 9 3346710 3346710 G A RFX3 Nonsense_Mutation p.Q58* 0.22 TCGA-G3-A25S-01 9 5774022 5774022 G A KIAA1432 Missense_Mutation p.E1350K 0.10 tolerated(0.08) benign(0.001) TCGA-G3-A25S-01 9 72874164 72874164 C A SMC5 Nonsense_Mutation p.S57* 0.15 TCGA-G3-A25S-01 X 114541215 114541215 A G LUZP4 Missense_Mutation p.Q263R 0.63 tolerated(0.14) possibly_damaging(0.883) TCGA-G3-A25S-01 X 17095520 17095520 C T REPS2 Silent p.P502P 0.40 TCGA-G3-A25S-01 X 17819189 17819189 G T RAI2 Missense_Mutation p.N314K 0.09 deleterious(0.03) unknown(0) TCGA-G3-A25T-01 10 12221083 12221083 A G NUDT5 Silent p.D60D 0.44 TCGA-G3-A25T-01 10 24762983 24762983 A G KIAA1217 Missense_Mutation p.E558G 0.12 deleterious(0) possibly_damaging(0.823) TCGA-G3-A25T-01 10 90988121 90988121 C A LIPA Missense_Mutation p.L88F 0.09 tolerated(0.12) benign(0.288) TCGA-G3-A25T-01 11 117097967 117097967 G T PCSK7 Silent p.G225G 0.08 TCGA-G3-A25T-01 11 26529751 26529751 A G ANO3 Missense_Mutation p.D178G 0.08 deleterious(0.01) benign(0.001) TCGA-G3-A25T-01 11 32610277 32610277 T C EIF3M Silent p.L105L 0.09 TCGA-G3-A25T-01 11 64522270 64522270 A T PYGM Nonsense_Mutation p.Y298* 0.20 TCGA-G3-A25T-01 11 65780325 65780325 C A CST6 Missense_Mutation p.T90K 0.72 deleterious(0.02) probably_damaging(0.997) TCGA-G3-A25T-01 11 88911776 88911776 G C TYR Missense_Mutation p.E219Q 0.35 deleterious(0) probably_damaging(1) TCGA-G3-A25T-01 12 11286203 11286203 T A TAS2R30 Missense_Mutation p.K214I 0.11 deleterious(0) probably_damaging(0.967) TCGA-G3-A25T-01 12 113824744 113824744 C T PLBD2 Missense_Mutation p.S430F 0.48 tolerated(0.23) benign(0.004) TCGA-G3-A25T-01 12 121426782 121426782 A G HNF1A Missense_Mutation p.K158R 0.09 deleterious(0.01) possibly_damaging(0.793) TCGA-G3-A25T-01 12 56086982 56086982 G T ITGA7 Silent p.G889G 0.13 TCGA-G3-A25T-01 13 113835485 113835485 T C PCID2 Missense_Mutation p.R303G 0.35 deleterious(0) probably_damaging(0.981) TCGA-G3-A25T-01 14 20979191 20979191 T C RNASE10 Silent p.T187T 0.13 TCGA-G3-A25T-01 14 25281918 25281918 A G STXBP6 Silent p.C210C 0.10 TCGA-G3-A25T-01 15 42182309 42182309 A G SPTBN5 Missense_Mutation p.I160T 0.08 probably_damaging(1) TCGA-G3-A25T-01 15 54306377 54306377 C T UNC13C Missense_Mutation p.T426I 0.41 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-G3-A25T-01 15 90631837 90631837 C G IDH2 Missense_Mutation p.R172S 0.40 deleterious_low_confidence(0) probably_damaging(1) TCGA-G3-A25T-01 16 56309970 56309970 G T GNAO1 Missense_Mutation p.D97Y 0.14 deleterious(0.04) possibly_damaging(0.45) TCGA-G3-A25T-01 16 67983784 67983784 C T SLC12A4 Nonsense_Mutation p.W558* 0.08 TCGA-G3-A25T-01 16 70937965 70937965 T A HYDIN Missense_Mutation p.Y2840F 0.10 possibly_damaging(0.801) TCGA-G3-A25T-01 17 1387559 1387559 A C MYO1C Missense_Mutation p.S38R 0.62 tolerated(0.32) possibly_damaging(0.793) TCGA-G3-A25T-01 17 2203159 2203159 C A SMG6 Silent p.V296V 0.30 TCGA-G3-A25T-01 17 27421740 27421740 G A MYO18A Silent p.D1546D 0.29 TCGA-G3-A25T-01 17 30551747 30551747 C A RHOT1 Silent p.R691R 0.11 TCGA-G3-A25T-01 17 3957431 3957431 C A ZZEF1 Missense_Mutation p.G1785V 0.30 deleterious(0) probably_damaging(1) TCGA-G3-A25T-01 17 42476035 42476035 G - GPATCH8 Frame_Shift_Del p.P1137Hfs*11 0.08 TCGA-G3-A25T-01 17 4642567 4642567 A G CXCL16 Missense_Mutation p.L42P 0.13 tolerated(0.09) probably_damaging(0.955) TCGA-G3-A25T-01 17 72588235 72588235 A G C17orf77 Missense_Mutation p.N17S 0.08 tolerated_low_confidence(0.09) possibly_damaging(0.486) TCGA-G3-A25T-01 18 12329714 12329717 TCTG CCT AFG3L2 Frame_Shift_Del p.R748Gfs*93 0.34 TCGA-G3-A25T-01 18 25591881 25591881 T C CDH2 Missense_Mutation p.R159G 0.37 deleterious(0) probably_damaging(0.998) TCGA-G3-A25T-01 18 3742341 3742341 G T DLGAP1 Silent p.I448I 0.10 TCGA-G3-A25T-01 18 56585829 56585829 A G ZNF532 Missense_Mutation p.K104E 0.20 tolerated(0.05) benign(0.297) TCGA-G3-A25T-01 19 37935820 37935820 T C ZNF569 Missense_Mutation p.T2A 0.12 tolerated(0.12) benign(0) TCGA-G3-A25T-01 19 47207834 47207834 C T PRKD2 Missense_Mutation p.R195H 0.25 deleterious(0.01) possibly_damaging(0.719) TCGA-G3-A25T-01 19 49131441 49131441 G A SPHK2 Missense_Mutation p.R260H 0.28 deleterious(0) probably_damaging(1) TCGA-G3-A25T-01 19 58084146 58084146 G C ZNF416 Missense_Mutation p.H376D 0.24 deleterious(0) probably_damaging(0.999) TCGA-G3-A25T-01 1 1103284 1103284 C G MIR200A RNA 0.32 TCGA-G3-A25T-01 1 120529697 120529697 C T NOTCH2 Missense_Mutation p.G254R 0.21 deleterious(0) probably_damaging(0.997) TCGA-G3-A25T-01 1 173596300 173596300 T C ANKRD45 Splice_Site p.X166_splice 0.10 TCGA-G3-A25T-01 1 175372511 175372511 G A TNR Silent p.D247D 0.34 TCGA-G3-A25T-01 1 200544771 200544771 C - KIF14 Frame_Shift_Del p.E1172Nfs*22 0.09 TCGA-G3-A25T-01 1 202287962 202287962 G A LGR6 Missense_Mutation p.R844H 0.29 tolerated(0.21) benign(0.001) TCGA-G3-A25T-01 1 229666102 229666102 C T ABCB10 Missense_Mutation p.V497M 0.10 deleterious(0) probably_damaging(0.965) TCGA-G3-A25T-01 1 23234452 23234452 G A EPHB2 Missense_Mutation p.D716N 0.08 deleterious(0) possibly_damaging(0.758) TCGA-G3-A25T-01 1 236924459 236924459 C T ACTN2 Silent p.L838L 0.08 TCGA-G3-A25T-01 1 27690041 27690041 T C MAP3K6 Splice_Site p.X289_splice 0.20 TCGA-G3-A25T-01 1 89664501 89664501 A G GBP4 Missense_Mutation p.L6P 0.11 deleterious_low_confidence(0.03) benign(0.102) TCGA-G3-A25T-01 20 21346075 21346075 C T XRN2 Missense_Mutation p.P758S 0.43 deleterious(0.01) probably_damaging(1) TCGA-G3-A25T-01 21 45397947 45397947 T C AGPAT3 Missense_Mutation p.I263T 0.10 deleterious(0.01) possibly_damaging(0.517) TCGA-G3-A25T-01 22 21350269 21350269 T C LZTR1 Missense_Mutation p.F696S 0.21 deleterious(0) probably_damaging(0.976) TCGA-G3-A25T-01 2 113993092 113993092 G A PAX8 Silent p.S322S 0.17 TCGA-G3-A25T-01 2 128462360 128462360 T C WDR33 3'UTR 0.36 TCGA-G3-A25T-01 2 160804063 160804063 T C PLA2R1 Silent p.R1239R 0.18 TCGA-G3-A25T-01 2 171573770 171573770 G A SP5 Silent p.T351T 0.11 TCGA-G3-A25T-01 2 179430304 179430304 C T TTN Missense_Mutation p.R26852H 0.24 TCGA-G3-A25T-01 2 179610836 179610836 C T TTN Intron 0.22 TCGA-G3-A25T-01 2 204591353 204591353 C T CD28 Intron 0.10 TCGA-G3-A25T-01 2 223066132 223066132 C T PAX3 Missense_Mutation p.A484T 0.34 deleterious_low_confidence(0.01) benign(0.054) TCGA-G3-A25T-01 2 74699826 74699826 T A MRPL53 5'UTR 0.28 TCGA-G3-A25T-01 3 111319663 111319663 C G CD96 Missense_Mutation p.A346G 0.56 tolerated(0.08) benign(0.022) TCGA-G3-A25T-01 3 138117409 138117409 A G MRAS Missense_Mutation p.N149S 0.11 tolerated(0.16) benign(0) TCGA-G3-A25T-01 3 27152745 27152745 A G NEK10 3'UTR 0.09 TCGA-G3-A25T-01 3 52439874 52439874 G A BAP1 Nonsense_Mutation p.Q280* 0.62 TCGA-G3-A25T-01 4 110581513 110581513 T C CCDC109B Missense_Mutation p.F113S 0.09 tolerated(0.06) benign(0.314) TCGA-G3-A25T-01 4 123238013 123238013 C T KIAA1109 Silent p.L3556L 0.21 TCGA-G3-A25T-01 4 128590302 128590302 G A INTU Missense_Mutation p.V362I 0.17 tolerated(0.8) benign(0.015) TCGA-G3-A25T-01 4 129127674 129127674 A - LARP1B Frame_Shift_Del p.D803Tfs*10 0.10 TCGA-G3-A25T-01 4 155665881 155665881 G A LRAT Missense_Mutation p.A135T 0.09 tolerated(0.08) possibly_damaging(0.597) TCGA-G3-A25T-01 4 4249372 4249372 C T TMEM128 5'UTR 0.20 TCGA-G3-A25T-01 4 5620323 5620323 T C EVC2 Missense_Mutation p.D863G 0.10 deleterious(0) probably_damaging(0.998) TCGA-G3-A25T-01 4 5975506 5975506 C T C4orf50 Silent p.L570L 0.10 TCGA-G3-A25T-01 4 68995584 68995584 T A TMPRSS11F 5'UTR 0.09 TCGA-G3-A25T-01 6 27791973 27791973 G A HIST1H4J Missense_Mutation p.R24H 0.16 tolerated(0.05) benign(0.065) TCGA-G3-A25T-01 6 72892264 72892264 T G RIMS1 Missense_Mutation p.Y364D 0.39 deleterious(0) possibly_damaging(0.698) TCGA-G3-A25T-01 7 115580539 115580539 A G TFEC 3'UTR 0.09 TCGA-G3-A25T-01 7 22533059 22533059 T C STEAP1B Missense_Mutation p.R161G 0.41 deleterious(0) probably_damaging(0.999) TCGA-G3-A25T-01 7 4798696 4798701 CGCCCA TTCCT FOXK1 Frame_Shift_Del p.S420Ffs*7 0.13 TCGA-G3-A25T-01 7 94293687 94293687 G A PEG10 Silent p.P273P 0.17 TCGA-G3-A25T-01 8 118170071 118170071 C T SLC30A8 Missense_Mutation p.A187V 0.67 tolerated(1) benign(0.004) TCGA-G3-A25T-01 8 48614552 48614552 C G SPIDR Missense_Mutation p.A651G 0.47 deleterious(0.03) possibly_damaging(0.707) TCGA-G3-A25T-01 9 131678510 131678510 C T LRRC8A Missense_Mutation p.R765W 0.33 tolerated(0.12) probably_damaging(0.995) TCGA-G3-A25T-01 9 133787241 133787241 A G FIBCD1 Missense_Mutation p.F295S 0.42 deleterious(0) probably_damaging(0.999) TCGA-G3-A25T-01 9 16436331 16436331 G A BNC2 Missense_Mutation p.H621Y 0.08 deleterious(0.02) benign(0.04) TCGA-G3-A25T-01 X 106959961 106959961 A T TSC22D3 Intron 0.25 TCGA-G3-A25T-01 X 152991039 152991039 C T ABCD1 Silent p.F106F 0.28 TCGA-G3-A25T-01 X 34149594 34149594 C A FAM47A Missense_Mutation p.D268Y 0.58 tolerated(1) probably_damaging(0.934) TCGA-G3-A25T-01 X 91134323 91134323 T C PCDH11X Intron 0.32 TCGA-G3-A25U-01 10 129141983 129141983 G A DOCK1 Missense_Mutation p.S1045N 0.09 tolerated(0.42) possibly_damaging(0.483) TCGA-G3-A25U-01 10 24762971 24762971 C A KIAA1217 Missense_Mutation p.P554H 0.13 deleterious(0) probably_damaging(1) TCGA-G3-A25U-01 10 54531337 54531337 G T MBL2 Nonsense_Mutation p.S20* 0.09 TCGA-G3-A25U-01 10 71148962 71148962 C T HK1 Silent p.L653L 0.82 TCGA-G3-A25U-01 10 79010979 79010979 A G KCNMA1 Silent p.L192L 0.14 TCGA-G3-A25U-01 10 86131991 86131991 G T CCSER2 Missense_Mutation p.D395Y 0.12 deleterious(0) probably_damaging(1) TCGA-G3-A25U-01 10 97918109 97918109 C A ZNF518A RNA 0.11 TCGA-G3-A25U-01 11 100864136 100864136 C T TMEM133 3'UTR 0.10 TCGA-G3-A25U-01 11 111753200 111753200 C T C11orf1 Nonsense_Mutation p.Q52* 0.09 TCGA-G3-A25U-01 11 124972140 124972140 C T TMEM218 5'UTR 1.00 TCGA-G3-A25U-01 11 33358704 33358704 A T HIPK3 Missense_Mutation p.K435N 0.44 deleterious(0) benign(0.105) TCGA-G3-A25U-01 11 33358706 33358706 A C HIPK3 Missense_Mutation p.E436A 0.43 tolerated(0.06) probably_damaging(0.987) TCGA-G3-A25U-01 11 62040428 62040428 G C SCGB2A2 Splice_Site p.X82_splice 0.48 TCGA-G3-A25U-01 11 62290411 62290411 C A AHNAK Silent p.V3826V 0.42 TCGA-G3-A25U-01 11 64878964 64878964 C G VPS51 Missense_Mutation p.L752V 0.39 deleterious(0) probably_damaging(0.997) TCGA-G3-A25U-01 12 107712744 107712744 G T BTBD11 Silent p.V9V 0.09 TCGA-G3-A25U-01 12 109889619 109889619 C A KCTD10 Splice_Site p.X242_splice 0.09 TCGA-G3-A25U-01 12 3048495 3048495 A T TULP3 Missense_Mutation p.Q405L 0.41 deleterious(0) probably_damaging(1) TCGA-G3-A25U-01 12 40076864 40076864 G T C12orf40 Nonsense_Mutation p.E380* 0.12 TCGA-G3-A25U-01 12 48143590 48143590 C A RAPGEF3 Missense_Mutation p.Q276H 0.12 deleterious(0) probably_damaging(1) TCGA-G3-A25U-01 12 70004150 70004150 G T LRRC10 Missense_Mutation p.R157S 0.46 tolerated(0.31) possibly_damaging(0.508) TCGA-G3-A25U-01 12 89745641 89745641 G T DUSP6 Missense_Mutation p.P59Q 0.10 deleterious(0) probably_damaging(0.99) TCGA-G3-A25U-01 12 99117014 99117014 A G APAF1 Missense_Mutation p.H1043R 0.39 deleterious(0.05) possibly_damaging(0.838) TCGA-G3-A25U-01 13 35731313 35731313 A G NBEA Missense_Mutation p.Y917C 0.94 deleterious(0) probably_damaging(0.999) TCGA-G3-A25U-01 13 48947605 48947606 - A RB1 Frame_Shift_Ins p.N399Kfs*7 0.53 TCGA-G3-A25U-01 14 102391540 102391540 C A PPP2R5C Missense_Mutation p.D533E 0.44 deleterious_low_confidence(0.01) benign(0.104) TCGA-G3-A25U-01 14 106573427 106573427 T C IGHV3-11 Missense_Mutation p.M53V 0.46 deleterious_low_confidence(0.01) benign(0.176) TCGA-G3-A25U-01 14 24901958 24901958 G T KHNYN Silent p.R460R 0.09 TCGA-G3-A25U-01 14 35072633 35072633 A C SNX6 Missense_Mutation p.V158G 0.42 deleterious(0.02) probably_damaging(0.951) TCGA-G3-A25U-01 14 64749351 64749351 G T ESR2 Missense_Mutation p.P118H 0.12 tolerated(0.07) benign(0.072) TCGA-G3-A25U-01 15 40764449 40764449 C A CHST14 Missense_Mutation p.A346D 0.11 tolerated(0.63) benign(0.014) TCGA-G3-A25U-01 15 43816465 43816465 T C MAP1A Silent p.L932L 0.24 TCGA-G3-A25U-01 15 81589305 81589305 G A IL16 Missense_Mutation p.E647K 0.43 tolerated(0.29) benign(0.075) TCGA-G3-A25U-01 15 81615246 81615246 C A STARD5 Missense_Mutation p.G48V 0.58 deleterious(0) probably_damaging(1) TCGA-G3-A25U-01 15 88522526 88522526 G T NTRK3 Intron 0.44 TCGA-G3-A25U-01 15 89074867 89074867 G A DET1 Missense_Mutation p.R35C 0.62 tolerated(0.08) benign(0.394) TCGA-G3-A25U-01 16 15811118 15811118 T A MYH11 Nonsense_Mutation p.K1802* 0.09 TCGA-G3-A25U-01 16 524995 524995 G A RAB11FIP3 Intron 0.50 TCGA-G3-A25U-01 16 70841965 70841965 T C HYDIN Missense_Mutation p.T4962A 0.23 possibly_damaging(0.801) TCGA-G3-A25U-01 16 712780 712780 C T WDR90 Missense_Mutation p.T1416M 0.41 deleterious(0.02) probably_damaging(0.996) TCGA-G3-A25U-01 16 71894144 71894144 C A ZNF821 Missense_Mutation p.R339L 0.12 deleterious(0) probably_damaging(0.998) TCGA-G3-A25U-01 16 72045982 72045982 G A DHODH Missense_Mutation p.G19R 0.14 deleterious(0) probably_damaging(0.937) TCGA-G3-A25U-01 16 72142233 72142233 C A DHX38 Silent p.S1024S 0.12 TCGA-G3-A25U-01 16 88718946 88718946 T C MVD Missense_Mutation p.K397R 0.23 tolerated(0.15) benign(0.077) TCGA-G3-A25U-01 17 12819237 12819237 G T ARHGAP44 Missense_Mutation p.G99V 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-G3-A25U-01 17 17716721 17716721 G A SREBF1 Missense_Mutation p.R1089C 0.39 deleterious(0) probably_damaging(0.997) TCGA-G3-A25U-01 17 27442787 27442787 C T MYO18A Missense_Mutation p.E708K 0.44 deleterious(0) probably_damaging(0.994) TCGA-G3-A25U-01 17 37886014 37886014 C T MIEN1 Missense_Mutation p.G63D 0.28 tolerated(0.05) probably_damaging(0.961) TCGA-G3-A25U-01 17 38290670 38290670 C A MSL1 3'UTR 0.08 TCGA-G3-A25U-01 17 39623271 39623271 G T KRT32 Missense_Mutation p.L103I 0.08 deleterious(0) probably_damaging(0.998) TCGA-G3-A25U-01 17 44249095 44249095 T C KANSL1 Missense_Mutation p.R139G 0.27 deleterious(0) benign(0.273) TCGA-G3-A25U-01 17 7577534 7577534 C A TP53 Missense_Mutation p.R249S 0.76 deleterious(0) probably_damaging(0.994) TCGA-G3-A25U-01 17 79984801 79984801 C T LRRC45 Missense_Mutation p.R230W 0.31 deleterious(0) benign(0.027) TCGA-G3-A25U-01 17 975919 975919 A G ABR Missense_Mutation p.F277L 0.15 deleterious(0) probably_damaging(0.996) TCGA-G3-A25U-01 18 12353119 12353119 A G AFG3L2 Silent p.P401P 0.09 TCGA-G3-A25U-01 18 12802149 12802149 T G PTPN2 Missense_Mutation p.K287T 0.51 tolerated(0.07) possibly_damaging(0.461) TCGA-G3-A25U-01 19 12945925 12945925 C A RTBDN 5'UTR 0.08 TCGA-G3-A25U-01 19 15359981 15359981 A G BRD4 Intron 0.45 TCGA-G3-A25U-01 19 23433061 23433061 G A ZNF724P 5'UTR 0.56 TCGA-G3-A25U-01 19 36216120 36216120 G C KMT2B Splice_Site p.X1177_splice 0.54 TCGA-G3-A25U-01 19 36272086 36272086 T G ARHGAP33 Missense_Mutation p.I339M 0.44 deleterious_low_confidence(0) possibly_damaging(0.52) TCGA-G3-A25U-01 19 39899108 39899108 C A ZFP36 Nonsense_Mutation p.C256* 0.43 TCGA-G3-A25U-01 19 56274197 56274197 C T RFPL4A Nonsense_Mutation p.R174* 0.18 TCGA-G3-A25U-01 19 685682 685682 C T PRSS57 3'UTR 0.59 TCGA-G3-A25U-01 19 9006378 9006378 G C MUC16 Missense_Mutation p.P13214A 0.39 probably_damaging(0.937) TCGA-G3-A25U-01 1 1168847 1168847 C - B3GALT6 3'UTR 0.32 TCGA-G3-A25U-01 1 14075897 14075897 G A PRDM2 Silent p.G142G 0.10 TCGA-G3-A25U-01 1 158325802 158325802 G A CD1E Missense_Mutation p.A271T 0.32 deleterious(0.04) possibly_damaging(0.908) TCGA-G3-A25U-01 1 167096471 167096471 C A DUSP27 Silent p.S701S 0.21 TCGA-G3-A25U-01 1 197404300 197404300 G T CRB1 Nonsense_Mutation p.G1103* 0.11 TCGA-G3-A25U-01 1 201058492 201058492 C T CACNA1S Nonsense_Mutation p.W265* 0.14 TCGA-G3-A25U-01 1 216462747 216462747 T C USH2A Missense_Mutation p.N616D 0.09 possibly_damaging(0.744) TCGA-G3-A25U-01 1 22839460 22839460 T C ZBTB40 Silent p.P835P 0.12 TCGA-G3-A25U-01 1 247902126 247902126 T C OR14K1 Silent p.C70C 0.97 TCGA-G3-A25U-01 1 32118239 32118239 C G COL16A1 3'UTR 0.39 TCGA-G3-A25U-01 1 40226097 40226097 G T BMP8B Nonsense_Mutation p.C401* 0.09 TCGA-G3-A25U-01 1 67292730 67292730 C T WDR78 Splice_Site p.X705_splice 0.46 TCGA-G3-A25U-01 1 6845604 6845604 A C CAMTA1 Missense_Mutation p.E5A 0.24 deleterious_low_confidence(0.02) benign(0.213) TCGA-G3-A25U-01 1 84609990 84609990 G T PRKACB 5'UTR 0.09 TCGA-G3-A25U-01 22 38313779 38313779 G A MICALL1 Missense_Mutation p.V135M 0.12 tolerated(0.13) benign(0.021) TCGA-G3-A25U-01 2 110959033 110959033 A G NPHP1 Silent p.A36A 0.44 TCGA-G3-A25U-01 2 128366307 128366307 G T MYO7B Missense_Mutation p.G890W 0.10 deleterious(0.01) benign(0.267) TCGA-G3-A25U-01 2 177054913 177054913 C T HOXD1 3'UTR 0.16 TCGA-G3-A25U-01 2 191373895 191373895 G T TMEM194B 3'UTR 0.09 TCGA-G3-A25U-01 2 212615384 212615384 G T ERBB4 Missense_Mutation p.T201K 0.48 tolerated(0.15) benign(0.001) TCGA-G3-A25U-01 2 56104946 56104946 G T EFEMP1 Missense_Mutation p.P232Q 0.08 tolerated(0.15) benign(0.012) TCGA-G3-A25U-01 3 10206641 10206641 G T IRAK2 Translation_Start_Site p.M1? 0.10 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-G3-A25U-01 3 121340340 121340340 C T FBXO40 Missense_Mutation p.H22Y 0.09 tolerated(0.24) benign(0.02) TCGA-G3-A25U-01 3 138219253 138219253 G A CEP70 Missense_Mutation p.L509F 0.38 deleterious(0) probably_damaging(0.971) TCGA-G3-A25U-01 3 141678612 141678612 C A TFDP2 Nonsense_Mutation p.G319* 0.46 TCGA-G3-A25U-01 3 141678613 141678613 C A TFDP2 Missense_Mutation p.M318I 0.49 deleterious(0.05) benign(0.297) TCGA-G3-A25U-01 3 151598552 151598552 G T SUCNR1 Missense_Mutation p.C74F 0.36 deleterious(0.04) probably_damaging(0.997) TCGA-G3-A25U-01 3 152884391 152884391 T G RAP2B 3'UTR 0.46 TCGA-G3-A25U-01 3 178916692 178916692 C A PIK3CA Missense_Mutation p.P27T 0.48 deleterious(0) probably_damaging(1) TCGA-G3-A25U-01 3 18456693 18456693 T C SATB1 Silent p.Q183Q 0.41 TCGA-G3-A25U-01 3 192517134 192517134 C A MB21D2 Missense_Mutation p.G173C 0.10 deleterious(0.01) possibly_damaging(0.84) TCGA-G3-A25U-01 3 50211496 50211496 A G SEMA3F Silent p.A95A 0.11 TCGA-G3-A25U-01 3 51993962 51993962 C T PCBP4 Silent p.V155V 0.25 TCGA-G3-A25U-01 3 52513791 52513791 A G NISCH Silent p.T443T 0.47 TCGA-G3-A25U-01 3 61975392 61975392 T C PTPRG Missense_Mutation p.V95A 0.49 deleterious(0.02) benign(0.357) TCGA-G3-A25U-01 4 41985108 41985108 G A DCAF4L1 3'UTR 0.85 TCGA-G3-A25U-01 4 77357245 77357245 A G SHROOM3 Missense_Mutation p.T14A 0.47 tolerated(0.11) benign(0.008) TCGA-G3-A25U-01 5 160972296 160972296 G A GABRB2 Silent p.P58P 0.42 TCGA-G3-A25U-01 5 176939387 176939387 C A DDX41 Silent p.R519R 0.13 TCGA-G3-A25U-01 5 240575 240575 G T SDHA Missense_Mutation p.R512L 0.42 deleterious_low_confidence(0) probably_damaging(1) TCGA-G3-A25U-01 5 72189531 72189532 - T TNPO1 Splice_Site p.X715_splice 0.33 TCGA-G3-A25U-01 6 11717539 11717539 C T ADTRP Intron 0.10 TCGA-G3-A25U-01 6 133850118 133850118 C T EYA4 3'UTR 0.50 TCGA-G3-A25U-01 6 158923495 158923495 G T TULP4 Missense_Mutation p.V934F 0.50 deleterious_low_confidence(0) benign(0.157) TCGA-G3-A25U-01 6 17463259 17463259 G A CAP2 Silent p.Q85Q 0.58 TCGA-G3-A25U-01 6 33289726 33289726 A G DAXX 5'UTR 0.11 TCGA-G3-A25U-01 6 35289121 35289121 G T DEF6 Silent p.G610G 0.12 TCGA-G3-A25U-01 7 127292418 127292418 A G SND1 5'UTR 0.45 TCGA-G3-A25U-01 7 154379847 154379847 A G DPP6 Intron 0.10 TCGA-G3-A25U-01 7 44621075 44621075 C T TMED4 Silent p.R120R 0.44 TCGA-G3-A25U-01 7 77649287 77649287 G T MAGI2 Missense_Mutation p.P1238H 0.38 tolerated(0.09) possibly_damaging(0.753) TCGA-G3-A25U-01 7 88963115 88963115 A G ZNF804B Silent p.T273T 0.45 TCGA-G3-A25U-01 7 99247719 99247721 AGG - CYP3A5 In_Frame_Del p.S463del 0.43 TCGA-G3-A25U-01 8 139736874 139736874 C T COL22A1 Missense_Mutation p.G744E 0.40 unknown(0) TCGA-G3-A25U-01 8 30643819 30643819 G A PPP2CB Nonsense_Mutation p.Q288* 0.33 TCGA-G3-A25U-01 8 36776402 36776402 C A KCNU1 Silent p.I861I 0.10 TCGA-G3-A25U-01 8 42227402 42227402 T C POLB Missense_Mutation p.L270P 0.14 deleterious(0) probably_damaging(1) TCGA-G3-A25U-01 9 101778304 101778304 C T COL15A1 Missense_Mutation p.P517L 0.57 tolerated_low_confidence(0.07) benign(0.003) TCGA-G3-A25U-01 9 115337283 115337283 T C KIAA1958 Missense_Mutation p.M308T 0.12 deleterious_low_confidence(0.01) benign(0.003) TCGA-G3-A25U-01 9 130206447 130206447 C G ZNF79 Silent p.V156V 0.10 TCGA-G3-A25U-01 9 35662720 35662720 T A ARHGEF39 Missense_Mutation p.Q231L 0.36 deleterious(0.02) probably_damaging(0.933) TCGA-G3-A25U-01 X 118148215 118148215 G A LONRF3 Missense_Mutation p.V674I 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-G3-A25U-01 X 145076315 145076315 A C MIR888 RNA 0.53 TCGA-G3-A25U-01 X 43640727 43640727 G T MAOB Silent p.T331T 0.11 TCGA-G3-A25U-01 X 63410591 63410591 T A AMER1 Missense_Mutation p.Y859F 0.46 tolerated(1) possibly_damaging(0.608) TCGA-G3-A25U-01 X 70053381 70053383 CAA - TEX11 In_Frame_Del p.L211del 0.42 TCGA-G3-A25U-01 X 99854571 99854571 C A TNMD Silent p.R271R 0.32 TCGA-G3-A25V-01 10 104849378 104849378 G A NT5C2 3'UTR 0.15 TCGA-G3-A25V-01 10 122263112 122263112 G A PPAPDC1A Intron 0.13 TCGA-G3-A25V-01 11 118967763 118967763 C T DPAGT1 Missense_Mutation p.S391N 0.10 deleterious(0.02) possibly_damaging(0.907) TCGA-G3-A25V-01 11 31436406 31436406 G A DNAJC24 Missense_Mutation p.E54K 0.08 tolerated(0.05) benign(0.066) TCGA-G3-A25V-01 11 47256456 47256456 C A DDB2 Nonsense_Mutation p.S284* 0.15 TCGA-G3-A25V-01 11 51411592 51411592 C A OR4A5 Missense_Mutation p.M268I 0.19 tolerated_low_confidence(0.6) benign(0.004) TCGA-G3-A25V-01 11 55657422 55657422 G A TRIM51 Missense_Mutation p.E256K 0.09 tolerated(0.09) benign(0.027) TCGA-G3-A25V-01 11 94602492 94602492 A G AMOTL1 Missense_Mutation p.K873R 0.10 tolerated(0.68) probably_damaging(0.991) TCGA-G3-A25V-01 12 10775259 10775259 C A STYK1 Silent p.L315L 0.11 TCGA-G3-A25V-01 12 21684140 21684140 G T C12orf39 3'UTR 0.14 TCGA-G3-A25V-01 12 52756032 52756032 C A KRT85 Intron 0.13 TCGA-G3-A25V-01 12 56814376 56814376 C G TIMELESS Missense_Mutation p.V1069L 0.10 tolerated(1) benign(0.006) TCGA-G3-A25V-01 12 75692559 75692559 T C CAPS2 Missense_Mutation p.T337A 0.12 tolerated(0.19) benign(0.015) TCGA-G3-A25V-01 13 113980034 113980034 T C GRTP1 Missense_Mutation p.D288G 0.11 tolerated(0.11) benign(0.15) TCGA-G3-A25V-01 13 37678905 37678906 - T CSNK1A1L Frame_Shift_Ins p.Y164Vfs*16 0.20 TCGA-G3-A25V-01 14 20528668 20528668 C T OR4L1 Silent p.H155H 0.15 TCGA-G3-A25V-01 14 24032935 24032935 C G AP1G2 Missense_Mutation p.A408P 0.12 deleterious(0) probably_damaging(0.998) TCGA-G3-A25V-01 14 94173201 94173201 A G UNC79 Missense_Mutation p.Q2443R 0.07 deleterious(0) probably_damaging(0.99) TCGA-G3-A25V-01 15 35083385 35083385 A G ACTC1 Missense_Mutation p.M307T 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.553) TCGA-G3-A25V-01 15 42364567 42364567 T C PLA2G4D Silent p.G447G 0.13 TCGA-G3-A25V-01 15 77759501 77759501 A G HMG20A Missense_Mutation p.N101S 0.10 deleterious(0.01) possibly_damaging(0.596) TCGA-G3-A25V-01 15 90768934 90768934 G T SEMA4B Silent p.V521V 0.10 TCGA-G3-A25V-01 15 98995196 98995196 A G FAM169B Silent p.P76P 0.09 TCGA-G3-A25V-01 16 28167768 28167768 T A XPO6 Missense_Mutation p.S242C 0.16 deleterious(0) probably_damaging(0.983) TCGA-G3-A25V-01 16 48149506 48149506 G A ABCC12 Silent p.L603L 0.17 TCGA-G3-A25V-01 16 53340280 53340280 T - CHD9 Frame_Shift_Del p.Y2251Ifs*13 0.14 TCGA-G3-A25V-01 16 89807184 89807184 A C ZNF276 3'Flank 0.16 TCGA-G3-A25V-01 17 11998923 11998923 A - MAP2K4 Frame_Shift_Del p.K143Nfs*9 0.13 TCGA-G3-A25V-01 17 1631824 1631824 G T WDR81 Nonsense_Mutation p.E1191* 0.11 TCGA-G3-A25V-01 17 4686278 4686278 C T TM4SF5 Silent p.I175I 0.25 TCGA-G3-A25V-01 17 7577531 7577531 G - TP53 Frame_Shift_Del p.I251Sfs*94 0.29 TCGA-G3-A25V-01 17 8012628 8012628 G A ALOXE3 Missense_Mutation p.L608F 0.12 deleterious(0.02) possibly_damaging(0.861) TCGA-G3-A25V-01 18 28648117 28648117 T C DSC2 Missense_Mutation p.Y857C 0.20 deleterious(0) probably_damaging(0.992) TCGA-G3-A25V-01 18 6958590 6958590 G A LAMA1 Missense_Mutation p.T2617M 0.09 deleterious(0.01) possibly_damaging(0.87) TCGA-G3-A25V-01 19 53856991 53856991 A G ZNF845 3'UTR 0.13 TCGA-G3-A25V-01 19 57840605 57840605 A G ZNF543 Missense_Mutation p.N592S 0.12 tolerated(0.06) benign(0.001) TCGA-G3-A25V-01 19 58048901 58048901 C A ZNF549 Missense_Mutation p.L177M 0.10 tolerated(0.24) benign(0.004) TCGA-G3-A25V-01 19 58864757 58864757 C A A1BG Intron 0.08 TCGA-G3-A25V-01 1 103343720 103343720 G T COL11A1 Missense_Mutation p.S1759Y 0.13 unknown(0) TCGA-G3-A25V-01 1 10381913 10381913 A C KIF1B Missense_Mutation p.K740Q 0.23 tolerated(0.17) possibly_damaging(0.73) TCGA-G3-A25V-01 1 14149688 14149688 G A PRDM2 3'UTR 0.17 TCGA-G3-A25V-01 1 161600871 161600871 A C FCGR3B Missense_Mutation p.L41R 0.12 deleterious(0) probably_damaging(0.996) TCGA-G3-A25V-01 1 200959272 200959272 C T KIF21B Silent p.E1008E 0.09 TCGA-G3-A25V-01 1 205588972 205588972 C T ELK4 Intron 0.17 TCGA-G3-A25V-01 1 216538320 216538320 A G USH2A Silent p.T253T 0.15 TCGA-G3-A25V-01 1 233512249 233512249 G T MLK4 Missense_Mutation p.A634S 0.09 tolerated(0.17) benign(0.005) TCGA-G3-A25V-01 1 249211485 249211485 C T PGBD2 Silent p.N234N 0.18 TCGA-G3-A25V-01 1 31732889 31732889 A G SNRNP40 3'UTR 0.08 TCGA-G3-A25V-01 1 64709883 64709883 A G UBE2U 3'UTR 0.17 TCGA-G3-A25V-01 1 77528691 77528691 T C ST6GALNAC5 Missense_Mutation p.Y271H 0.11 probably_damaging(1) TCGA-G3-A25V-01 1 79356902 79356902 C T ELTD1 Splice_Site p.X671_splice 0.14 TCGA-G3-A25V-01 21 34540848 34540848 C T C21orf54 Missense_Mutation p.R69H 0.13 benign(0) TCGA-G3-A25V-01 21 47608664 47608664 A T LSS 3'UTR 0.09 TCGA-G3-A25V-01 2 109347859 109347859 G T RANBP2 Nonsense_Mutation p.G112* 0.13 TCGA-G3-A25V-01 2 109392308 109392308 T C RANBP2 Missense_Mutation p.S2805P 0.11 tolerated(0.15) possibly_damaging(0.854) TCGA-G3-A25V-01 2 114004482 114004482 T C PAX8 Missense_Mutation p.N14D 0.08 deleterious(0) probably_damaging(0.985) TCGA-G3-A25V-01 2 144903283 144903283 A T GTDC1 Missense_Mutation p.L68H 0.10 deleterious(0) probably_damaging(0.999) TCGA-G3-A25V-01 2 175244954 175244954 G A CIR1 Silent p.I114I 0.11 TCGA-G3-A25V-01 2 190719433 190719433 G - PMS1 Frame_Shift_Del p.E480Kfs*36 0.10 TCGA-G3-A25V-01 2 226378354 226378354 C T NYAP2 Silent p.A163A 0.19 TCGA-G3-A25V-01 2 32626685 32626685 G A BIRC6 Missense_Mutation p.G471E 0.10 probably_damaging(0.999) TCGA-G3-A25V-01 2 73447311 73447311 A G SMYD5 Missense_Mutation p.H113R 0.11 tolerated(0.8) benign(0.003) TCGA-G3-A25V-01 3 111996688 111996688 G A SLC9C1 Missense_Mutation p.P113L 0.12 deleterious(0) probably_damaging(1) TCGA-G3-A25V-01 3 114018501 114018501 T C TIGIT Missense_Mutation p.L150P 0.21 tolerated(0.06) benign(0.085) TCGA-G3-A25V-01 3 127642837 127642838 - TCA KBTBD12 In_Frame_Ins p.S313dup 0.18 TCGA-G3-A25V-01 3 142841015 142841015 C T CHST2 Nonsense_Mutation p.Q453* 0.14 TCGA-G3-A25V-01 3 183145765 183145765 T C MCF2L2 Translation_Start_Site p.M1? 0.10 deleterious_low_confidence(0) benign(0.06) TCGA-G3-A25V-01 3 19962061 19962061 T C EFHB Splice_Site p.X264_splice 0.10 TCGA-G3-A25V-01 3 51434157 51434157 G T VPRBP 3'UTR 0.12 TCGA-G3-A25V-01 5 138855911 138855911 G T TMEM173 Missense_Mutation p.Q359K 0.10 tolerated(0.5) possibly_damaging(0.535) TCGA-G3-A25V-01 5 55088627 55088627 A G DDX4 Silent p.E487E 0.09 TCGA-G3-A25V-01 6 107655522 107655522 T C PDSS2 Missense_Mutation p.D104G 0.13 tolerated(0.14) benign(0.24) TCGA-G3-A25V-01 6 117632252 117632252 T C ROS1 Missense_Mutation p.D2055G 0.10 deleterious(0) probably_damaging(0.968) TCGA-G3-A25V-01 6 128326319 128326319 T C PTPRK Missense_Mutation p.M802V 0.10 tolerated(0.44) benign(0.036) TCGA-G3-A25V-01 6 30633483 30633483 G T DHX16 Silent p.R232R 0.29 TCGA-G3-A25V-01 6 39877595 39877595 C A MOCS1 Missense_Mutation p.K362N 0.10 deleterious(0) probably_damaging(0.947) TCGA-G3-A25V-01 6 46847716 46847716 A - GPR116 Frame_Shift_Del p.V292Gfs*38 0.14 TCGA-G3-A25V-01 6 74227627 74227627 G A EEF1A1 Missense_Mutation p.T432I 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.58) TCGA-G3-A25V-01 6 74227628 74227628 T A EEF1A1 Missense_Mutation p.T432S 0.21 deleterious_low_confidence(0) benign(0.007) TCGA-G3-A25V-01 7 101671397 101671397 C T CUX1 Missense_Mutation p.A65V 0.11 deleterious(0.03) unknown(0) TCGA-G3-A25V-01 7 135330244 135330244 T G NUP205 Silent p.L1904L 0.12 TCGA-G3-A25V-01 7 154645528 154645528 G T DPP6 Missense_Mutation p.D569Y 0.27 deleterious(0.01) benign(0.035) TCGA-G3-A25V-01 7 155457902 155457902 C G RBM33 Missense_Mutation p.A26G 0.16 deleterious(0) unknown(0) TCGA-G3-A25V-01 7 21940749 21940749 C T DNAH11 Silent p.Y4483Y 0.23 TCGA-G3-A25V-01 7 47937789 47937789 T C PKD1L1 Missense_Mutation p.I689M 0.13 tolerated(0.06) benign(0.184) TCGA-G3-A25V-01 7 65617296 65617296 G A CRCP Silent p.K133K 0.10 TCGA-G3-A25V-01 7 86826043 86826043 G A TMEM243 Missense_Mutation p.P89L 0.11 deleterious(0) probably_damaging(0.977) TCGA-G3-A25V-01 8 101718907 101718907 T C PABPC1 Missense_Mutation p.N525S 0.11 tolerated(0.87) benign(0) TCGA-G3-A25V-01 8 28218433 28218433 A G ZNF395 Missense_Mutation p.L70P 0.16 tolerated(0.27) benign(0.009) TCGA-G3-A25V-01 9 101829192 101829192 T C COL15A1 Missense_Mutation p.F1227S 0.18 deleterious(0.03) possibly_damaging(0.604) TCGA-G3-A25V-01 9 112963511 112963511 C T C9orf152 Missense_Mutation p.G146E 0.17 tolerated(0.36) benign(0.063) TCGA-G3-A25V-01 9 125563002 125563002 T C OR1K1 Missense_Mutation p.F201L 0.10 tolerated(0.79) benign(0.039) TCGA-G3-A25V-01 9 96870207 96870207 G A PTPDC1 Missense_Mutation p.G801D 0.08 tolerated_low_confidence(0.2) benign(0.062) TCGA-G3-A25V-01 X 150884676 150884676 C A FATE1 Missense_Mutation p.Q29K 0.09 deleterious(0.03) probably_damaging(0.935) TCGA-G3-A25V-01 X 152986434 152986434 A G BCAP31 Intron 0.19 TCGA-G3-A25V-01 X 1712870 1712870 A G AKAP17A Missense_Mutation p.D172G 0.10 tolerated(0.06) possibly_damaging(0.547) TCGA-G3-A25V-01 X 63445128 63445128 T C ASB12 Missense_Mutation p.S135G 0.30 deleterious(0) probably_damaging(0.987) TCGA-G3-A25V-01 Y 21897301 21897301 C T KDM5D Silent p.L290L 0.28 TCGA-G3-A25W-01 10 104497568 104497568 T C SFXN2 3'UTR 0.11 TCGA-G3-A25W-01 10 13371747 13371747 T C SEPHS1 Missense_Mutation p.K201R 0.12 deleterious(0) probably_damaging(0.997) TCGA-G3-A25W-01 10 135211954 135211954 T C MTG1 Silent p.L100L 0.11 TCGA-G3-A25W-01 10 15255747 15255747 G A FAM171A1 Silent p.L614L 0.16 TCGA-G3-A25W-01 10 49983837 49983837 A G WDFY4 Missense_Mutation p.N950S 0.10 tolerated(1) benign(0.002) TCGA-G3-A25W-01 10 69726472 69726472 T C HERC4 Missense_Mutation p.I632V 0.15 tolerated(0.65) benign(0.001) TCGA-G3-A25W-01 11 122659905 122659905 G A UBASH3B Missense_Mutation p.S290N 0.18 tolerated(0.3) benign(0.009) TCGA-G3-A25W-01 11 27695800 27695800 C A BDNF Missense_Mutation p.C11F 0.12 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-G3-A25W-01 11 43964686 43964686 A G C11orf96 Missense_Mutation p.K391E 0.33 deleterious_low_confidence(0) possibly_damaging(0.828) TCGA-G3-A25W-01 11 47745708 47745708 G A FNBP4 Missense_Mutation p.T779I 0.19 tolerated_low_confidence(0.05) benign(0.003) TCGA-G3-A25W-01 11 61723374 61723376 CAC - BEST1 In_Frame_Del p.T85del 0.37 TCGA-G3-A25W-01 11 66101485 66101485 A G RIN1 Missense_Mutation p.L499P 0.15 deleterious(0) probably_damaging(1) TCGA-G3-A25W-01 11 66114249 66114249 C A B3GNT1 Silent p.V256V 0.15 TCGA-G3-A25W-01 11 88911570 88911570 T A TYR Missense_Mutation p.V150D 0.08 deleterious(0) probably_damaging(0.999) TCGA-G3-A25W-01 12 107254187 107254187 C A RIC8B Missense_Mutation p.P483Q 0.11 deleterious(0) probably_damaging(1) TCGA-G3-A25W-01 12 112308091 112308091 G A MAPKAPK5 Missense_Mutation p.R137Q 0.19 tolerated(1) benign(0) TCGA-G3-A25W-01 12 124835268 124835268 C T NCOR2 Missense_Mutation p.V1237I 0.33 probably_damaging(0.997) TCGA-G3-A25W-01 12 125834592 125834592 A G TMEM132B Missense_Mutation p.E216G 0.14 deleterious(0) probably_damaging(0.999) TCGA-G3-A25W-01 12 22486954 22486954 G C ST8SIA1 Missense_Mutation p.N71K 0.32 tolerated(0.08) benign(0.394) TCGA-G3-A25W-01 12 25232338 25232338 T A LRMP Nonsense_Mutation p.Y26* 0.18 TCGA-G3-A25W-01 12 32135645 32135645 G A KIAA1551 Missense_Mutation p.A586T 0.17 tolerated(0.38) benign(0.024) TCGA-G3-A25W-01 12 52711467 52711467 C T KRT83 Missense_Mutation p.E250K 0.10 deleterious(0.02) benign(0.367) TCGA-G3-A25W-01 12 76765334 76765334 T C OSBPL8 Missense_Mutation p.T650A 0.17 deleterious(0.03) possibly_damaging(0.815) TCGA-G3-A25W-01 12 80655780 80655780 C A OTOGL Missense_Mutation p.Q632K 0.17 deleterious(0) probably_damaging(0.996) TCGA-G3-A25W-01 13 100617641 100617641 G A ZIC5 Missense_Mutation p.T661M 0.25 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-G3-A25W-01 13 109507803 109507803 C T MYO16 Missense_Mutation p.P399S 0.15 deleterious(0.04) probably_damaging(1) TCGA-G3-A25W-01 14 23568468 23568468 C T C14orf119 3'UTR 0.11 TCGA-G3-A25W-01 14 31827874 31827874 C - HEATR5A Frame_Shift_Del p.V501Lfs*22 0.18 TCGA-G3-A25W-01 14 39524374 39524374 C A SEC23A Missense_Mutation p.R544S 0.23 deleterious(0) probably_damaging(0.966) TCGA-G3-A25W-01 14 50269987 50269987 T C NEMF Missense_Mutation p.E628G 0.30 deleterious(0) probably_damaging(0.999) TCGA-G3-A25W-01 14 88416215 88416215 G C GALC Missense_Mutation p.L438V 0.15 tolerated(0.27) benign(0.106) TCGA-G3-A25W-01 14 94752572 94752572 T C SERPINA10 Missense_Mutation p.K339R 0.15 tolerated(0.11) benign(0.333) TCGA-G3-A25W-01 14 95916354 95916354 A G SYNE3 Missense_Mutation p.W455R 0.13 deleterious(0) probably_damaging(1) TCGA-G3-A25W-01 15 44943731 44943731 C A SPG11 Missense_Mutation p.V472L 0.21 deleterious(0.04) benign(0.008) TCGA-G3-A25W-01 15 79254415 79254415 A G RASGRF1 3'UTR 0.12 TCGA-G3-A25W-01 16 22144300 22144300 A G VWA3A Missense_Mutation p.E651G 0.26 tolerated(0.08) benign(0.06) TCGA-G3-A25W-01 16 24802369 24802369 G A TNRC6A Silent p.G802G 0.52 TCGA-G3-A25W-01 16 46615855 46615855 G A SHCBP1 Missense_Mutation p.T602I 0.22 tolerated(0.12) benign(0.002) TCGA-G3-A25W-01 16 47533690 47533690 C G PHKB Missense_Mutation p.Q64E 0.32 deleterious(0) probably_damaging(0.923) TCGA-G3-A25W-01 16 4945347 4945347 T A PPL Missense_Mutation p.Q386L 0.17 tolerated(0.41) benign(0.011) TCGA-G3-A25W-01 16 57075465 57075465 A G NLRC5 Missense_Mutation p.H1003R 0.09 tolerated(0.42) benign(0.079) TCGA-G3-A25W-01 16 67214392 67214392 C T KIAA0895L Nonsense_Mutation p.W41* 0.09 TCGA-G3-A25W-01 16 71604286 71604286 C A TAT Silent p.L309L 0.10 TCGA-G3-A25W-01 16 87446754 87446754 C T ZCCHC14 Missense_Mutation p.G414S 0.21 tolerated(0.5) benign(0.259) TCGA-G3-A25W-01 17 27041897 27041897 A G RAB34 Missense_Mutation p.F266S 0.31 deleterious(0) probably_damaging(1) TCGA-G3-A25W-01 17 38991628 38991628 A G TMEM99 3'UTR 0.32 TCGA-G3-A25W-01 17 41347052 41347052 T G NBR1 Silent p.P582P 0.13 TCGA-G3-A25W-01 17 41879127 41879127 A G MPP3 Missense_Mutation p.V567A 0.24 tolerated(0.8) benign(0.001) TCGA-G3-A25W-01 17 64873421 64873421 C T CACNG5 5'UTR 0.16 TCGA-G3-A25W-01 17 73998397 73998397 G T CDK3 Silent p.L128L 0.10 TCGA-G3-A25W-01 17 80011842 80011842 G A GPS1 Silent p.L115L 0.27 TCGA-G3-A25W-01 18 54362254 54362254 A G WDR7 Missense_Mutation p.I394M 0.23 tolerated(0.07) probably_damaging(0.997) TCGA-G3-A25W-01 18 67871371 67871371 A G RTTN Silent p.P116P 0.14 TCGA-G3-A25W-01 19 1484037 1484037 C T PCSK4 Silent p.A386A 0.34 TCGA-G3-A25W-01 19 1807173 1807173 G A ATP8B3 Silent p.D203D 0.13 TCGA-G3-A25W-01 19 49379178 49379178 G A PPP1R15A Missense_Mutation p.R658H 0.14 tolerated(0.56) unknown(0) TCGA-G3-A25W-01 19 51323553 51323553 C G KLK1 Missense_Mutation p.S118T 0.13 deleterious(0) probably_damaging(0.998) TCGA-G3-A25W-01 19 53015353 53015353 T A ZNF578 Silent p.G573G 0.09 TCGA-G3-A25W-01 19 56029520 56029520 C T SSC5D Missense_Mutation p.P1293S 0.22 unknown(0) TCGA-G3-A25W-01 19 8563670 8563670 A G PRAM1 Missense_Mutation p.L341P 0.10 deleterious(0.02) benign(0.222) TCGA-G3-A25W-01 1 145414811 145414811 C T HFE2 Silent p.P10P 0.26 TCGA-G3-A25W-01 1 154947279 154947279 C T CKS1B Nonsense_Mutation p.R20* 0.31 TCGA-G3-A25W-01 1 158984635 158984635 G C IFI16 Missense_Mutation p.K55N 0.23 deleterious(0.03) possibly_damaging(0.493) TCGA-G3-A25W-01 1 178420786 178420786 G A RASAL2 Missense_Mutation p.D570N 0.34 tolerated(0.11) possibly_damaging(0.477) TCGA-G3-A25W-01 1 201832722 201832722 A G IPO9 Missense_Mutation p.R539G 0.11 deleterious(0) probably_damaging(0.98) TCGA-G3-A25W-01 1 202710671 202710671 C T KDM5B Silent p.V923V 0.23 TCGA-G3-A25W-01 1 29543106 29543106 T C MECR Missense_Mutation p.I90V 0.27 tolerated(0.11) benign(0.035) TCGA-G3-A25W-01 1 36348954 36348954 G T AGO1 5'UTR 0.12 TCGA-G3-A25W-01 1 46782285 46782285 C T UQCRH 3'UTR 0.16 TCGA-G3-A25W-01 1 70501869 70501869 C T LRRC7 Silent p.T649T 0.13 TCGA-G3-A25W-01 20 14306475 14306475 A T FLRT3 Missense_Mutation p.S560T 0.21 tolerated(0.35) benign(0.061) TCGA-G3-A25W-01 20 43384815 43384815 G A RIMS4 Missense_Mutation p.S258F 0.09 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-G3-A25W-01 20 62839474 62839474 C A MYT1 Missense_Mutation p.P309T 0.18 benign(0.114) TCGA-G3-A25W-01 22 24939007 24939007 A G GUCD1 Silent p.D230D 0.26 TCGA-G3-A25W-01 22 30165722 30165722 C A UQCR10 3'UTR 0.10 TCGA-G3-A25W-01 22 30733807 30733807 A G SF3A1 Missense_Mutation p.L608P 0.12 tolerated(0.22) possibly_damaging(0.601) TCGA-G3-A25W-01 2 100019252 100019253 AG - REV1 Frame_Shift_Del p.S1132Cfs*11 0.38 TCGA-G3-A25W-01 2 119739211 119739211 C T MARCO Missense_Mutation p.P294S 0.32 tolerated(0.07) possibly_damaging(0.876) TCGA-G3-A25W-01 2 137988754 137988754 T C THSD7B Missense_Mutation p.S622P 0.18 deleterious(0.01) possibly_damaging(0.82) TCGA-G3-A25W-01 2 171358299 171358299 G T MYO3B Missense_Mutation p.W1098C 0.34 tolerated(0.15) benign(0.052) TCGA-G3-A25W-01 2 179407524 179407524 C T TTN Missense_Mutation p.V32353I 0.16 TCGA-G3-A25W-01 2 21235442 21235442 G T APOB Nonsense_Mutation p.S1433* 0.28 TCGA-G3-A25W-01 2 220037368 220037368 T C CNPPD1 Silent p.Q391Q 0.35 TCGA-G3-A25W-01 2 238434305 238434305 A T MLPH Missense_Mutation p.E246V 0.25 deleterious(0) benign(0.13) TCGA-G3-A25W-01 2 242174629 242174629 G T HDLBP Silent p.I1017I 0.08 TCGA-G3-A25W-01 2 85808885 85808885 C G VAMP8 3'UTR 0.45 TCGA-G3-A25W-01 3 112358316 112358316 G T CCDC80 Missense_Mutation p.A146E 0.11 deleterious(0.03) probably_damaging(0.96) TCGA-G3-A25W-01 3 113375509 113375509 T C KIAA2018 Missense_Mutation p.I1674V 0.16 probably_damaging(0.99) TCGA-G3-A25W-01 3 124418823 124418823 C A AC080008.1 5'Flank 0.10 TCGA-G3-A25W-01 3 132418877 132418878 GC A NPHP3 Frame_Shift_Del p.A591Ffs*2 0.09 TCGA-G3-A25W-01 3 43373848 43373848 A G SNRK Intron 0.10 TCGA-G3-A25W-01 3 48600437 48600437 G A UCN2 Nonsense_Mutation p.R41* 0.28 TCGA-G3-A25W-01 3 49738928 49738928 G T RNF123 Missense_Mutation p.D428Y 0.36 deleterious(0) probably_damaging(0.979) TCGA-G3-A25W-01 3 49869470 49869470 G A TRAIP Missense_Mutation p.R306C 0.21 tolerated(0.06) benign(0.006) TCGA-G3-A25W-01 3 57233897 57233897 G T HESX1 Nonsense_Mutation p.S17* 0.12 TCGA-G3-A25W-01 3 71804004 71804004 C T GPR27 Silent p.R268R 0.08 TCGA-G3-A25W-01 4 146650320 146650320 G T C4orf51 Splice_Site p.X123_splice 0.11 TCGA-G3-A25W-01 4 146650321 146650321 G T C4orf51 Missense_Mutation p.A123S 0.10 tolerated(0.06) benign(0.186) TCGA-G3-A25W-01 4 2242302 2242302 T G HAUS3 Missense_Mutation p.Q124H 0.21 deleterious(0) probably_damaging(0.995) TCGA-G3-A25W-01 4 8293156 8293156 G T HTRA3 Silent p.V256V 0.11 TCGA-G3-A25W-01 4 83971134 83971134 A G COPS4 Missense_Mutation p.Q136R 0.22 tolerated(0.08) possibly_damaging(0.701) TCGA-G3-A25W-01 5 109941886 109941886 G T TMEM232 Missense_Mutation p.S335R 0.15 deleterious(0.03) possibly_damaging(0.889) TCGA-G3-A25W-01 5 130841171 130841171 A T RAPGEF6 Missense_Mutation p.S329R 0.15 tolerated(0.18) possibly_damaging(0.59) TCGA-G3-A25W-01 5 131013351 131013351 A T FNIP1 Intron 0.09 TCGA-G3-A25W-01 5 140772531 140772531 G T PCDHGA8 Missense_Mutation p.D51Y 0.14 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-G3-A25W-01 5 145246178 145246178 C G GRXCR2 Missense_Mutation p.E150D 0.23 tolerated(0.48) benign(0.008) TCGA-G3-A25W-01 5 176637052 176637052 T C NSD1 Missense_Mutation p.L551P 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-G3-A25W-01 5 3600204 3600204 C A IRX1 Missense_Mutation p.A381E 0.29 tolerated(0.13) benign(0.288) TCGA-G3-A25W-01 5 37227754 37227754 T C C5orf42 Silent p.L429L 0.18 TCGA-G3-A25W-01 5 39376177 39376177 G T DAB2 Silent p.S723S 0.40 TCGA-G3-A25W-01 5 74892708 74892708 T C POLK Silent p.S730S 0.15 TCGA-G3-A25W-01 6 107780344 107780344 C T PDSS2 Nonsense_Mutation p.W49* 0.10 TCGA-G3-A25W-01 6 110036323 110036323 C T FIG4 Missense_Mutation p.R37C 0.16 deleterious(0) probably_damaging(0.999) TCGA-G3-A25W-01 6 144783916 144783916 C T UTRN Nonsense_Mutation p.Q994* 0.24 TCGA-G3-A25W-01 6 158487492 158487492 G A SYNJ2 Silent p.L514L 0.09 TCGA-G3-A25W-01 6 165749696 165749696 C A PDE10A Missense_Mutation p.G728V 0.29 deleterious(0) probably_damaging(0.999) TCGA-G3-A25W-01 6 31907064 31907064 C A CFB Missense_Mutation p.L243M 0.10 deleterious(0.05) probably_damaging(0.938) TCGA-G3-A25W-01 6 38256182 38256182 G A BTBD9 Silent p.V440V 0.22 TCGA-G3-A25W-01 6 65300537 65300537 A G EYS Silent p.D1741D 0.17 TCGA-G3-A25W-01 7 100349904 100349904 A G ZAN Missense_Mutation p.I726V 0.14 benign(0.002) TCGA-G3-A25W-01 7 128119304 128119304 G A METTL2B Missense_Mutation p.E99K 0.16 deleterious(0) probably_damaging(0.951) TCGA-G3-A25W-01 7 138845777 138845777 C T TTC26 Intron 0.12 TCGA-G3-A25W-01 7 1784476 1784476 C T ELFN1 Missense_Mutation p.R82C 0.16 deleterious(0) probably_damaging(0.99) TCGA-G3-A25W-01 7 5645021 5645021 C T FSCN1 Silent p.G466G 0.23 TCGA-G3-A25W-01 7 86509653 86509653 C A KIAA1324L 3'UTR 0.32 TCGA-G3-A25W-01 8 6357519 6357519 G C ANGPT2 3'UTR 0.25 TCGA-G3-A25W-01 8 71499196 71499196 T C TRAM1 Missense_Mutation p.Y227C 0.18 deleterious(0.01) possibly_damaging(0.624) TCGA-G3-A25W-01 9 104192169 104192169 G T ALDOB Missense_Mutation p.F64L 0.23 tolerated(0.19) possibly_damaging(0.497) TCGA-G3-A25W-01 9 140149989 140149989 G T NELFB Missense_Mutation p.V10L 0.12 tolerated(0.19) benign(0.004) TCGA-G3-A25W-01 9 140166958 140166958 G A NELFB Splice_Site p.X496_splice 0.21 TCGA-G3-A25W-01 X 123695669 123695669 T A TENM1 Splice_Site p.X763_splice 0.12 TCGA-G3-A25W-01 X 12838909 12838909 G C PRPS2 Missense_Mutation p.C287S 0.14 tolerated(0.09) benign(0.284) TCGA-G3-A25W-01 X 134426310 134426310 T G ZNF75D Missense_Mutation p.Q167H 0.15 tolerated(0.05) benign(0.143) TCGA-G3-A25W-01 X 150839639 150839639 G T PASD1 Missense_Mutation p.A401S 0.19 tolerated(0.08) benign(0.422) TCGA-G3-A25W-01 X 38144823 38144823 A C RPGR Missense_Mutation p.N1143K 0.21 unknown(0) TCGA-G3-A25W-01 X 73812528 73812528 G - RLIM Frame_Shift_Del p.Q208Rfs*28 0.13 TCGA-G3-A25Y-01 10 101982676 101982676 G T CHUK Missense_Mutation p.H88N 0.11 tolerated(1) benign(0) TCGA-G3-A25Y-01 10 118896079 118896079 C G VAX1 Missense_Mutation p.Q111H 0.64 deleterious(0) unknown(0) TCGA-G3-A25Y-01 10 82098869 82098869 T C DYDC1 Missense_Mutation p.D128G 0.09 deleterious(0.04) benign(0.014) TCGA-G3-A25Y-01 10 93609319 93609319 G A TNKS2 Missense_Mutation p.E888K 0.32 tolerated(0.11) possibly_damaging(0.587) TCGA-G3-A25Y-01 11 111953659 111953659 C T C11orf57 Missense_Mutation p.T282I 0.27 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-G3-A25Y-01 11 113130930 113130930 G T NCAM1 Missense_Mutation p.K721N 0.07 tolerated(0.23) benign(0.02) TCGA-G3-A25Y-01 11 123513234 123513234 A T SCN3B Missense_Mutation p.V122E 0.26 deleterious(0) probably_damaging(0.977) TCGA-G3-A25Y-01 11 124180637 124180637 G T OR8D1 Missense_Mutation p.A9E 0.21 deleterious(0.01) benign(0.001) TCGA-G3-A25Y-01 11 33738932 33738932 A G CD59 Silent p.C51C 0.09 TCGA-G3-A25Y-01 11 62293785 62293785 T C AHNAK Missense_Mutation p.I2702V 0.05 benign(0.02) TCGA-G3-A25Y-01 11 62747031 62747031 C A SLC22A6 Silent p.G430G 0.09 TCGA-G3-A25Y-01 11 64031579 64031579 A G PLCB3 Missense_Mutation p.S883G 0.09 tolerated(0.18) benign(0.001) TCGA-G3-A25Y-01 11 68338555 68338555 A C PPP6R3 Missense_Mutation p.E442D 0.20 deleterious(0.03) benign(0.007) TCGA-G3-A25Y-01 11 75110602 75110602 A G RPS3 Missense_Mutation p.Q4R 0.25 tolerated(0.11) benign(0.43) TCGA-G3-A25Y-01 11 92531317 92531317 T A FAT3 Missense_Mutation p.I1713N 0.38 benign(0.148) TCGA-G3-A25Y-01 12 101381373 101381373 T A ANO4 Missense_Mutation p.L185Q 0.47 deleterious(0.01) benign(0.382) TCGA-G3-A25Y-01 12 122622025 122622025 G T MLXIP Missense_Mutation p.C681F 0.08 tolerated(0.69) benign(0.248) TCGA-G3-A25Y-01 12 124821716 124821753 TGGAGGTGGACCTGGGGGAGGAGAGAAGGCGGTCAGGC GGG NCOR2 Splice_Site p.X1896_splice 0.11 TCGA-G3-A25Y-01 12 56993854 56993854 C A BAZ2A Missense_Mutation p.R1642L 0.38 deleterious(0.04) possibly_damaging(0.902) TCGA-G3-A25Y-01 12 7522105 7522105 A G CD163L1 Missense_Mutation p.L1296P 0.25 tolerated(0.25) benign(0.049) TCGA-G3-A25Y-01 12 81004359 81004359 G C PTPRQ Missense_Mutation p.E1621Q 0.18 tolerated(0.06) possibly_damaging(0.521) TCGA-G3-A25Y-01 12 93804590 93804590 C G UBE2N Missense_Mutation p.S113T 0.12 tolerated(0.31) benign(0.397) TCGA-G3-A25Y-01 13 25466801 25466801 C A CENPJ Nonsense_Mutation p.E1066* 0.25 TCGA-G3-A25Y-01 13 37678951 37678951 C T CSNK1A1L Missense_Mutation p.R148H 0.34 deleterious_low_confidence(0.02) benign(0.02) TCGA-G3-A25Y-01 13 48953728 48953728 A G RB1 Splice_Site p.X445_splice 0.30 TCGA-G3-A25Y-01 13 51591120 51591120 T C GUCY1B2 RNA 0.14 TCGA-G3-A25Y-01 14 105452896 105452896 C A C14orf79 Missense_Mutation p.P43H 0.11 tolerated(0.34) benign(0.386) TCGA-G3-A25Y-01 14 20926842 20926842 G A TMEM55B Missense_Mutation p.A244V 0.38 deleterious(0.04) benign(0.103) TCGA-G3-A25Y-01 14 42356583 42356583 G A LRFN5 Missense_Mutation p.R252K 0.11 deleterious(0.01) probably_damaging(0.981) TCGA-G3-A25Y-01 15 101929687 101929687 G T PCSK6 Missense_Mutation p.A430D 0.17 deleterious(0) probably_damaging(0.999) TCGA-G3-A25Y-01 15 40993273 40993273 A G RAD51 Missense_Mutation p.I33M 0.11 deleterious(0) possibly_damaging(0.881) TCGA-G3-A25Y-01 16 1463923 1463923 C T UNKL Missense_Mutation p.G71S 0.11 deleterious(0) probably_damaging(0.992) TCGA-G3-A25Y-01 16 19547850 19547850 T C CCP110 Missense_Mutation p.S287P 0.09 tolerated(0.22) benign(0.003) TCGA-G3-A25Y-01 16 29899099 29899099 C A SEZ6L2 Missense_Mutation p.R360L 0.18 deleterious(0.01) probably_damaging(0.989) TCGA-G3-A25Y-01 16 58706093 58706093 G T SLC38A7 Missense_Mutation p.S313Y 0.49 deleterious(0) probably_damaging(0.959) TCGA-G3-A25Y-01 16 86614827 86614827 T C FOXL1 3'UTR 0.10 TCGA-G3-A25Y-01 17 16325966 16325966 G T TRPV2 Nonsense_Mutation p.G130* 0.15 TCGA-G3-A25Y-01 17 39786742 39786742 C A KRT42P RNA 0.08 TCGA-G3-A25Y-01 17 41368750 41368750 A C TMEM106A Missense_Mutation p.E202A 0.12 tolerated(0.05) benign(0.446) TCGA-G3-A25Y-01 17 48629417 48629417 G A SPATA20 Silent p.A611A 0.18 TCGA-G3-A25Y-01 17 61957832 61957832 G T GH2 Silent p.V252V 0.19 TCGA-G3-A25Y-01 17 63526129 63526129 C A AXIN2 Missense_Mutation p.G833C 0.10 deleterious(0.01) probably_damaging(1) TCGA-G3-A25Y-01 17 74019605 74019605 G T EVPL Missense_Mutation p.P110Q 0.33 deleterious(0.01) probably_damaging(0.976) TCGA-G3-A25Y-01 18 13825959 13825959 A G MC5R Silent p.K65K 0.09 TCGA-G3-A25Y-01 18 19780725 19780725 C T GATA6 Missense_Mutation p.S576L 0.31 deleterious(0.01) probably_damaging(0.994) TCGA-G3-A25Y-01 18 59942653 59942653 G A KIAA1468 Missense_Mutation p.G972S 0.09 tolerated(0.11) probably_damaging(0.95) TCGA-G3-A25Y-01 18 61018193 61018193 T G KDSR Silent p.G179G 0.11 TCGA-G3-A25Y-01 19 11339690 11339690 G A DOCK6 Silent p.L914L 0.42 TCGA-G3-A25Y-01 19 34857692 34857692 A G GPI Missense_Mutation p.K112R 0.09 tolerated_low_confidence(0.73) benign(0.042) TCGA-G3-A25Y-01 19 39108474 39108474 T C MAP4K1 Missense_Mutation p.Q21R 0.08 tolerated(0.06) benign(0.353) TCGA-G3-A25Y-01 19 39322023 39322023 A G ECH1 Silent p.S62S 0.38 TCGA-G3-A25Y-01 19 46202122 46202122 C T QPCTL Missense_Mutation p.R284C 0.27 deleterious(0.01) possibly_damaging(0.868) TCGA-G3-A25Y-01 19 51957481 51957481 C A SIGLEC8 Missense_Mutation p.A413S 0.38 tolerated(0.21) possibly_damaging(0.468) TCGA-G3-A25Y-01 1 115401205 115401205 A G SYCP1 Missense_Mutation p.Y110C 0.44 deleterious(0) probably_damaging(1) TCGA-G3-A25Y-01 1 118035855 118035855 G T MAN1A2 Missense_Mutation p.A419S 0.32 deleterious(0.03) benign(0.094) TCGA-G3-A25Y-01 1 157667132 157667132 C T FCRL3 Silent p.Q214Q 0.08 TCGA-G3-A25Y-01 1 158323611 158323611 G A CD1E 5'UTR 0.44 TCGA-G3-A25Y-01 1 161008750 161008750 C T TSTD1 5'UTR 0.15 TCGA-G3-A25Y-01 1 165601496 165601496 G A MGST3 Intron 0.13 TCGA-G3-A25Y-01 1 179989459 179989459 C T CEP350 Silent p.S850S 0.23 TCGA-G3-A25Y-01 1 202119404 202119404 A T PTPN7 Intron 0.09 TCGA-G3-A25Y-01 1 22173039 22173039 C T HSPG2 Missense_Mutation p.E2740K 0.11 probably_damaging(0.999) TCGA-G3-A25Y-01 1 247751732 247751732 C T OR2G2 Missense_Mutation p.P24L 0.24 deleterious(0.01) probably_damaging(1) TCGA-G3-A25Y-01 1 92433718 92433718 G T BRDT Missense_Mutation p.V116F 0.35 deleterious(0) probably_damaging(0.999) TCGA-G3-A25Y-01 20 31022742 31022752 CTAGGAGATGC - ASXL1 Frame_Shift_Del p.G744Pfs*26 0.18 TCGA-G3-A25Y-01 20 62329759 62329759 G A TNFRSF6B Missense_Mutation p.G249D 0.40 tolerated(0.7) benign(0.004) TCGA-G3-A25Y-01 21 15579152 15579152 A G LIPI Silent p.V31V 0.12 TCGA-G3-A25Y-01 21 38437856 38437856 T A PIGP 3'UTR 0.08 TCGA-G3-A25Y-01 21 43523889 43523889 C T C21orf128 Missense_Mutation p.G115E 0.10 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-G3-A25Y-01 22 21563359 21563359 G A GGT2 Missense_Mutation p.T422M 0.36 deleterious(0) benign(0.318) TCGA-G3-A25Y-01 22 39621841 39621841 G A PDGFB Nonsense_Mutation p.Q205* 0.17 TCGA-G3-A25Y-01 2 11053487 11053487 C T KCNF1 Missense_Mutation p.T312I 0.29 deleterious(0) probably_damaging(1) TCGA-G3-A25Y-01 2 130725851 130725851 T C RAB6C-AS1 RNA 0.09 TCGA-G3-A25Y-01 2 160737645 160737645 C A LY75-CD302 Missense_Mutation p.E451D 0.40 deleterious(0.01) probably_damaging(0.953) TCGA-G3-A25Y-01 2 160737646 160737646 T A LY75-CD302 Missense_Mutation p.E451V 0.41 deleterious(0) probably_damaging(0.978) TCGA-G3-A25Y-01 2 32530764 32530764 G C YIPF4 3'UTR 0.21 TCGA-G3-A25Y-01 2 37455644 37455644 G C CEBPZ Missense_Mutation p.S231C 0.23 deleterious(0) possibly_damaging(0.823) TCGA-G3-A25Y-01 2 70015202 70015202 C T ANXA4 Missense_Mutation p.T9I 0.12 deleterious(0) probably_damaging(0.918) TCGA-G3-A25Y-01 2 7033836 7033836 T C RSAD2 Splice_Site p.X307_splice 0.09 TCGA-G3-A25Y-01 2 85769191 85769191 G C MAT2A Intron 0.10 TCGA-G3-A25Y-01 3 130828741 130828741 T C NEK11 Missense_Mutation p.L144P 0.08 deleterious(0) probably_damaging(0.989) TCGA-G3-A25Y-01 3 194168612 194168612 A C ATP13A3 Missense_Mutation p.I426S 0.07 deleterious(0) benign(0.259) TCGA-G3-A25Y-01 3 194380824 194380824 A G LSG1 Missense_Mutation p.L187P 0.09 deleterious(0) probably_damaging(0.996) TCGA-G3-A25Y-01 3 42754745 42754745 G A CCDC13 Silent p.R594R 0.19 TCGA-G3-A25Y-01 3 48609431 48609431 C A COL7A1 Intron 0.30 TCGA-G3-A25Y-01 3 49057609 49057609 C T DALRD3 5'Flank 0.24 TCGA-G3-A25Y-01 3 49365180 49365180 G C USP4 Missense_Mutation p.A100G 0.11 tolerated(0.2) benign(0.079) TCGA-G3-A25Y-01 5 121767681 121767681 C T SNCAIP Silent p.C400C 0.26 TCGA-G3-A25Y-01 5 137284796 137284796 C T FAM13B Missense_Mutation p.G648S 0.10 deleterious(0) probably_damaging(0.999) TCGA-G3-A25Y-01 5 149681722 149681722 G T ARSI Missense_Mutation p.P72H 0.08 deleterious(0) probably_damaging(1) TCGA-G3-A25Y-01 5 180432823 180432823 A C BTNL3 Missense_Mutation p.D451A 0.23 deleterious(0.03) benign(0.122) TCGA-G3-A25Y-01 5 38407124 38407124 G T EGFLAM Missense_Mutation p.R341S 0.25 deleterious(0.04) possibly_damaging(0.855) TCGA-G3-A25Y-01 5 52233253 52233253 C T ITGA1 Missense_Mutation p.P996L 0.37 tolerated(0.06) possibly_damaging(0.631) TCGA-G3-A25Y-01 6 119511012 119511012 C T MAN1A1 Missense_Mutation p.G455R 0.26 deleterious(0) probably_damaging(0.999) TCGA-G3-A25Y-01 6 151790078 151790078 C G C6orf211 Missense_Mutation p.Q387E 0.09 tolerated(0.42) benign(0.004) TCGA-G3-A25Y-01 6 166572014 166572014 G A T Missense_Mutation p.A366V 0.20 tolerated(0.09) benign(0.038) TCGA-G3-A25Y-01 6 28268801 28268801 G C PGBD1 Missense_Mutation p.W390C 0.41 deleterious(0) probably_damaging(0.987) TCGA-G3-A25Y-01 6 31084904 31084904 A G CDSN Missense_Mutation p.F163S 0.13 tolerated_low_confidence(1) unknown(0) TCGA-G3-A25Y-01 6 44108792 44108792 A G TMEM63B Missense_Mutation p.I247V 0.10 tolerated(0.59) benign(0.194) TCGA-G3-A25Y-01 6 97247241 97247241 G T GPR63 Missense_Mutation p.L123I 0.24 deleterious(0.01) possibly_damaging(0.897) TCGA-G3-A25Y-01 7 11485864 11485864 G T THSD7A Missense_Mutation p.A963E 0.38 deleterious(0) benign(0.379) TCGA-G3-A25Y-01 7 128449544 128449544 A T CCDC136 Missense_Mutation p.K549M 0.27 tolerated(0.12) probably_damaging(0.919) TCGA-G3-A25Y-01 7 27831697 27831697 G A TAX1BP1 Missense_Mutation p.V371I 0.07 tolerated(0.4) benign(0.007) TCGA-G3-A25Y-01 8 124221781 124221781 G T FAM83A 3'UTR 0.19 TCGA-G3-A25Y-01 8 144239671 144239671 G T LY6H Missense_Mutation p.P161H 0.16 deleterious_low_confidence(0) unknown(0) TCGA-G3-A25Y-01 8 17198903 17198903 T C MTMR7 Missense_Mutation p.D234G 0.34 tolerated(0.19) benign(0.007) TCGA-G3-A25Y-01 8 21959694 21959694 C A FAM160B2 Missense_Mutation p.S620R 0.32 deleterious(0.04) benign(0.322) TCGA-G3-A25Y-01 9 104315030 104315030 A T RNF20 Missense_Mutation p.E632D 0.25 tolerated(0.09) benign(0.05) TCGA-G3-A25Y-01 9 5742973 5742973 T G KIAA1432 Missense_Mutation p.F336V 0.35 deleterious(0) probably_damaging(0.995) TCGA-G3-A25Y-01 9 6793123 6793123 T C KDM4C Silent p.G45G 0.38 TCGA-G3-A25Y-01 9 79325022 79325022 G T PRUNE2 Missense_Mutation p.P723H 0.07 tolerated(0.15) benign(0.035) TCGA-G3-A25Y-01 X 120182439 120182439 G A GLUD2 Missense_Mutation p.D301N 0.26 tolerated(0.19) benign(0.02) TCGA-G3-A25Y-01 X 12937428 12937428 C G TLR8 Missense_Mutation p.T90S 0.35 deleterious(0.02) benign(0.259) TCGA-G3-A25Y-01 X 26158150 26158150 C A MAGEB18 3'UTR 0.31 TCGA-G3-A25Z-01 10 112572161 112572161 G A RBM20 Nonsense_Mutation p.W669* 0.22 TCGA-G3-A25Z-01 10 129871633 129871633 C A PTPRE Silent p.T499T 0.07 TCGA-G3-A25Z-01 10 134018356 134018356 T C DPYSL4 Silent p.D547D 0.48 TCGA-G3-A25Z-01 10 38121994 38121994 C G ZNF248 Missense_Mutation p.D97H 0.34 deleterious(0.01) possibly_damaging(0.819) TCGA-G3-A25Z-01 11 17530990 17530990 A G USH1C Silent p.N642N 0.20 TCGA-G3-A25Z-01 11 33682506 33682506 G A KIAA1549L Silent p.Q1738Q 0.29 TCGA-G3-A25Z-01 11 36516546 36516546 T C TRAF6 Missense_Mutation p.T220A 0.34 tolerated(0.47) probably_damaging(0.996) TCGA-G3-A25Z-01 11 45948313 45948313 C T GYLTL1B Missense_Mutation p.R406W 0.40 deleterious(0) possibly_damaging(0.776) TCGA-G3-A25Z-01 11 48347263 48347263 G A OR4C3 Silent p.G257G 0.10 TCGA-G3-A25Z-01 11 55703216 55703216 A G OR5I1 Missense_Mutation p.F221L 0.50 tolerated(1) benign(0.089) TCGA-G3-A25Z-01 11 57512438 57512438 G T BTBD18 Missense_Mutation p.S436Y 0.46 deleterious(0) possibly_damaging(0.844) TCGA-G3-A25Z-01 11 65658948 65658948 T C CCDC85B 3'UTR 0.12 TCGA-G3-A25Z-01 11 66204833 66204833 C - MRPL11 Frame_Shift_Del p.A101Pfs*12 0.26 TCGA-G3-A25Z-01 12 112093435 112093435 G C BRAP Missense_Mutation p.L416V 0.35 deleterious(0) benign(0.244) TCGA-G3-A25Z-01 12 132534878 132534878 A G EP400 Missense_Mutation p.N2404S 0.28 unknown(0) TCGA-G3-A25Z-01 12 133733009 133733009 A G ZNF10 Missense_Mutation p.I393V 0.38 tolerated(0.21) benign(0.068) TCGA-G3-A25Z-01 12 49359939 49359939 C A WNT10B Missense_Mutation p.W370L 0.08 deleterious(0) probably_damaging(0.995) TCGA-G3-A25Z-01 12 98991725 98991725 C T SLC25A3 Missense_Mutation p.P125L 0.36 deleterious(0) probably_damaging(1) TCGA-G3-A25Z-01 13 29242666 29242666 A G POMP Silent p.L73L 0.26 TCGA-G3-A25Z-01 13 35756573 35756573 G A NBEA Missense_Mutation p.R1580H 0.34 deleterious(0) probably_damaging(0.999) TCGA-G3-A25Z-01 14 26917336 26917336 A T NOVA1 Silent p.T451T 0.37 TCGA-G3-A25Z-01 14 67382766 67382766 G C GPHN Missense_Mutation p.G146R 0.23 deleterious(0) probably_damaging(1) TCGA-G3-A25Z-01 14 70252897 70252897 A G SLC10A1 Missense_Mutation p.S162P 0.49 deleterious(0.02) possibly_damaging(0.854) TCGA-G3-A25Z-01 15 28465614 28465614 G T HERC2 Missense_Mutation p.D1943E 0.31 benign(0.027) TCGA-G3-A25Z-01 15 48595052 48595052 T C SLC12A1 Silent p.N1090N 0.35 TCGA-G3-A25Z-01 15 49338586 49338586 G C SECISBP2L 5'UTR 0.33 TCGA-G3-A25Z-01 15 50878674 50878674 A G TRPM7 Silent p.T1467T 0.08 TCGA-G3-A25Z-01 15 51397266 51397266 C T TNFAIP8L3 Silent p.R36R 0.30 TCGA-G3-A25Z-01 15 66209210 66209210 G A MEGF11 Missense_Mutation p.A724V 0.39 tolerated(0.09) benign(0.334) TCGA-G3-A25Z-01 16 61859057 61859057 T C CDH8 Missense_Mutation p.M232V 0.32 deleterious(0) probably_damaging(0.981) TCGA-G3-A25Z-01 16 69965734 69965734 C T WWP2 Silent p.R541R 0.53 TCGA-G3-A25Z-01 16 89167289 89167289 C T ACSF3 Missense_Mutation p.T67M 0.38 deleterious(0) probably_damaging(0.994) TCGA-G3-A25Z-01 17 27027520 27027520 G A SUPT6H Missense_Mutation p.S1599N 0.16 tolerated(0.18) possibly_damaging(0.632) TCGA-G3-A25Z-01 17 61957781 61957781 T G GH2 3'UTR 0.09 TCGA-G3-A25Z-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.56 deleterious(0) probably_damaging(1) TCGA-G3-A25Z-01 17 77077980 77077980 G T ENGASE Missense_Mutation p.R291S 0.32 deleterious(0.03) possibly_damaging(0.461) TCGA-G3-A25Z-01 18 745776 745776 T C YES1 Missense_Mutation p.N219S 0.38 tolerated(0.54) benign(0.001) TCGA-G3-A25Z-01 19 1058628 1058628 T C ABCA7 Missense_Mutation p.F1721L 0.12 tolerated(0.09) probably_damaging(0.996) TCGA-G3-A25Z-01 19 17317927 17317927 C T MYO9B Missense_Mutation p.A1833V 0.27 deleterious(0) probably_damaging(1) TCGA-G3-A25Z-01 19 23545393 23545393 C A ZNF91 Missense_Mutation p.D130Y 0.29 tolerated(1) possibly_damaging(0.908) TCGA-G3-A25Z-01 19 42489335 42489335 G A ATP1A3 Missense_Mutation p.T256M 0.36 deleterious(0.02) probably_damaging(1) TCGA-G3-A25Z-01 19 51530742 51530742 T C KLK11 Missense_Mutation p.K11R 0.44 tolerated_low_confidence(0.74) benign(0.01) TCGA-G3-A25Z-01 19 54746397 54746397 A T LILRA6 Missense_Mutation p.L15Q 0.13 deleterious(0.01) benign(0.006) TCGA-G3-A25Z-01 19 55997777 55997777 C T NAT14 Silent p.A25A 0.53 TCGA-G3-A25Z-01 19 58152971 58152971 G T ZNF211 Nonsense_Mutation p.E438* 0.08 TCGA-G3-A25Z-01 19 9028261 9028261 G A MUC16 Silent p.G12177G 0.29 TCGA-G3-A25Z-01 1 109824628 109824628 C A PSRC1 Silent p.R44R 0.41 TCGA-G3-A25Z-01 1 149761838 149761838 C A FCGR1A Missense_Mutation p.A263D 0.55 deleterious(0) probably_damaging(0.924) TCGA-G3-A25Z-01 1 175048705 175048705 G A TNN Missense_Mutation p.V216M 0.48 deleterious(0.03) benign(0.075) TCGA-G3-A25Z-01 1 180064893 180064893 T C CEP350 Missense_Mutation p.V2916A 0.22 probably_damaging(0.997) TCGA-G3-A25Z-01 1 204438107 204438107 G A PIK3C2B Missense_Mutation p.A275V 0.29 deleterious(0.02) benign(0.301) TCGA-G3-A25Z-01 1 206649567 206649567 C T IKBKE Silent p.R134R 0.62 TCGA-G3-A25Z-01 1 6196807 6196807 A T CHD5 Missense_Mutation p.L852H 0.29 deleterious(0) probably_damaging(1) TCGA-G3-A25Z-01 20 17208109 17208109 C T PCSK2 Silent p.H53H 0.37 TCGA-G3-A25Z-01 20 308002 308002 C T SOX12 3'UTR 0.35 TCGA-G3-A25Z-01 20 39985684 39985684 G A LPIN3 Missense_Mutation p.R603H 0.26 tolerated(0.06) benign(0.03) TCGA-G3-A25Z-01 21 33296847 33296847 G A HUNK Missense_Mutation p.R110Q 0.30 deleterious(0) probably_damaging(1) TCGA-G3-A25Z-01 21 46117591 46117591 C T KRTAP10-12 Missense_Mutation p.P159S 0.35 tolerated(0.05) unknown(0) TCGA-G3-A25Z-01 22 37407014 37407014 A G TST 3'UTR 0.50 TCGA-G3-A25Z-01 22 38528998 38528998 C T PLA2G6 Missense_Mutation p.R306Q 0.39 tolerated(0.26) possibly_damaging(0.749) TCGA-G3-A25Z-01 22 39883537 39883537 C A MGAT3 Missense_Mutation p.P62H 0.36 deleterious_low_confidence(0.02) benign(0.182) TCGA-G3-A25Z-01 22 46615711 46615711 A C PPARA Missense_Mutation p.I171L 0.46 deleterious(0) benign(0.142) TCGA-G3-A25Z-01 22 50899106 50899106 A G SBF1 Silent p.S1001S 0.08 TCGA-G3-A25Z-01 2 169938117 169938117 T A DHRS9 Missense_Mutation p.L9Q 0.21 deleterious(0.02) possibly_damaging(0.862) TCGA-G3-A25Z-01 2 179648462 179648462 T C TTN Silent p.P942P 0.44 TCGA-G3-A25Z-01 2 196593015 196593015 C A SLC39A10 Missense_Mutation p.T760K 0.48 deleterious(0) probably_damaging(0.998) TCGA-G3-A25Z-01 2 215843664 215843664 C T ABCA12 Missense_Mutation p.G1614E 0.18 deleterious(0) probably_damaging(0.998) TCGA-G3-A25Z-01 2 218924548 218924548 T C CXCR2P1 RNA 0.28 TCGA-G3-A25Z-01 2 239142231 239142231 C A HES6 3'Flank 0.49 TCGA-G3-A25Z-01 2 48025798 48025798 G T MSH6 Nonsense_Mutation p.E226* 0.09 TCGA-G3-A25Z-01 2 55254616 55254616 T C RTN4 Missense_Mutation p.M207V 0.28 tolerated(0.16) benign(0.109) TCGA-G3-A25Z-01 2 55254618 55254618 T G RTN4 Missense_Mutation p.N206T 0.29 deleterious(0) benign(0.02) TCGA-G3-A25Z-01 3 10290922 10290922 G T TATDN2 Missense_Mutation p.S13I 0.19 deleterious_low_confidence(0.01) benign(0.164) TCGA-G3-A25Z-01 3 122003982 122003982 A G CASR Missense_Mutation p.S1071G 0.08 tolerated_low_confidence(0.31) benign(0) TCGA-G3-A25Z-01 3 41275047 41275047 C T CTNNB1 Missense_Mutation p.L405F 0.29 deleterious(0) probably_damaging(0.984) TCGA-G3-A25Z-01 3 47619095 47619095 G T CSPG5 Missense_Mutation p.P141T 0.15 deleterious_low_confidence(0.04) benign(0.044) TCGA-G3-A25Z-01 3 52549455 52549455 G T STAB1 Missense_Mutation p.S1294I 0.46 deleterious(0.03) benign(0.288) TCGA-G3-A25Z-01 3 58855185 58855185 C T C3orf67 Missense_Mutation p.R170Q 0.29 tolerated(0.19) benign(0.08) TCGA-G3-A25Z-01 3 63428954 63428954 G A SYNPR Intron 0.39 TCGA-G3-A25Z-01 3 64587702 64587702 T C ADAMTS9 Missense_Mutation p.E1312G 0.10 tolerated(0.31) benign(0.001) TCGA-G3-A25Z-01 3 77626718 77626718 G T ROBO2 Missense_Mutation p.D777Y 0.35 deleterious(0) probably_damaging(0.961) TCGA-G3-A25Z-01 3 97202883 97202883 T C EPHA6 Missense_Mutation p.I727T 0.42 deleterious(0) probably_damaging(0.998) TCGA-G3-A25Z-01 4 155505870 155505870 C A FGA Missense_Mutation p.L669F 0.10 deleterious(0) probably_damaging(0.962) TCGA-G3-A25Z-01 4 177632688 177632688 G T VEGFC Silent p.S223S 0.09 TCGA-G3-A25Z-01 4 2698242 2698242 G T FAM193A Missense_Mutation p.L852F 0.28 deleterious(0) probably_damaging(0.994) TCGA-G3-A25Z-01 4 57860856 57860856 A G POLR2B Missense_Mutation p.K134E 0.60 tolerated(0.52) benign(0.014) TCGA-G3-A25Z-01 5 139947621 139947621 C A SLC35A4 Silent p.V289V 0.40 TCGA-G3-A25Z-01 5 140563257 140563257 T A PCDHB16 Missense_Mutation p.S375T 0.41 deleterious_low_confidence(0.02) probably_damaging(0.926) TCGA-G3-A25Z-01 5 150072842 150072842 T C RBM22 Silent p.K313K 0.19 TCGA-G3-A25Z-01 5 173382915 173382915 G T CPEB4 Silent p.V655V 0.12 TCGA-G3-A25Z-01 5 35910562 35910562 A T CAPSL Missense_Mutation p.V74D 0.31 tolerated(0.73) benign(0) TCGA-G3-A25Z-01 5 76646969 76646969 G A PDE8B Missense_Mutation p.G366D 0.08 deleterious(0.01) probably_damaging(1) TCGA-G3-A25Z-01 6 121769148 121769148 G C GJA1 3'UTR 0.25 TCGA-G3-A25Z-01 6 142409410 142409410 A C NMBR Missense_Mutation p.V129G 0.32 deleterious(0.02) probably_damaging(0.995) TCGA-G3-A25Z-01 6 18427909 18427909 A G RNF144B Missense_Mutation p.E88G 0.09 tolerated(0.19) benign(0.082) TCGA-G3-A25Z-01 6 28269056 28269056 G T PGBD1 Missense_Mutation p.R475S 0.43 deleterious(0.03) possibly_damaging(0.864) TCGA-G3-A25Z-01 6 29910376 29910376 G C HLA-A Missense_Mutation p.A16P 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.653) TCGA-G3-A25Z-01 6 43323547 43323547 G A ZNF318 Missense_Mutation p.R509C 0.40 benign(0.046) TCGA-G3-A25Z-01 7 150746506 150746506 G A ASIC3 Silent p.T178T 0.43 TCGA-G3-A25Z-01 7 48443391 48443391 G T ABCA13 Missense_Mutation p.R3995S 0.26 benign(0.038) TCGA-G3-A25Z-01 7 87214868 87214868 T - ABCB1 Frame_Shift_Del p.G83Efs*3 0.24 TCGA-G3-A25Z-01 7 909049 909049 C T SUN1 Missense_Mutation p.L682F 0.25 deleterious(0) probably_damaging(0.998) TCGA-G3-A25Z-01 8 10470139 10470139 C A RP1L1 Missense_Mutation p.G490V 0.29 possibly_damaging(0.791) TCGA-G3-A25Z-01 8 11189305 11189305 G A SLC35G5 Silent p.G230G 0.37 TCGA-G3-A25Z-01 8 19682357 19682358 - A INTS10 Nonsense_Mutation p.Y294* 0.34 TCGA-G3-A25Z-01 9 112145782 112145782 C - PTPN3 Frame_Shift_Del p.G768Afs*34 0.45 TCGA-G3-A25Z-01 9 130494466 130494466 G A TOR2A Silent p.C271C 0.38 TCGA-G3-A25Z-01 X 128722192 128722192 C T OCRL Missense_Mutation p.L765F 0.81 tolerated(0.97) probably_damaging(0.987) TCGA-G3-A25Z-01 X 41555141 41555141 A G GPR34 Silent p.K85K 0.48 TCGA-G3-A25Z-01 X 70338632 70338632 G C MED12 Missense_Mutation p.E10Q 0.75 probably_damaging(0.999) TCGA-G3-A25Z-01 X 92966760 92966760 G A FAM133A 3'UTR 0.69 TCGA-G3-A3CG-01 10 116232776 116232804 GAAGTGTAGAAAGGCTCATAGGTAATAAG - ABLIM1 Frame_Shift_Del p.L403Gfs*3 0.19 TCGA-G3-A3CG-01 10 121595143 121595143 G C MCMBP Nonsense_Mutation p.S541* 0.29 TCGA-G3-A3CG-01 10 5046010 5046010 C A AKR1C2 Missense_Mutation p.Q6H 0.34 tolerated_low_confidence(0.4) benign(0.002) TCGA-G3-A3CG-01 10 81838495 81838495 A C TMEM254 Missense_Mutation p.S14R 0.29 tolerated(0.39) benign(0.023) TCGA-G3-A3CG-01 11 1000575 1000575 T C AP2A2 Silent p.P700P 0.20 TCGA-G3-A3CG-01 11 102713260 102713260 A T MMP3 Missense_Mutation p.V134D 0.21 deleterious(0) probably_damaging(0.918) TCGA-G3-A3CG-01 11 113631637 113631637 G A ZW10 Missense_Mutation p.R82C 0.50 tolerated(0.09) benign(0.009) TCGA-G3-A3CG-01 11 124189739 124189739 C T OR8D2 Missense_Mutation p.E119K 0.50 deleterious(0) benign(0) TCGA-G3-A3CG-01 11 134072793 134072793 G A NCAPD3 Silent p.S511S 0.09 TCGA-G3-A3CG-01 11 46703710 46703710 G C ARHGAP1 Missense_Mutation p.Q114E 0.21 deleterious(0) possibly_damaging(0.685) TCGA-G3-A3CG-01 11 5664784 5664784 G A TRIM34 Missense_Mutation p.D438N 0.07 tolerated(0.07) benign(0.322) TCGA-G3-A3CG-01 11 58893058 58893058 G A FAM111B Silent p.V496V 0.24 TCGA-G3-A3CG-01 11 63398635 63398635 C T ATL3 Silent p.L472L 0.25 TCGA-G3-A3CG-01 11 78482151 78482151 T A TENM4 Nonsense_Mutation p.R809* 0.19 TCGA-G3-A3CG-01 11 82644461 82644461 C T C11orf82 Missense_Mutation p.T694I 0.46 tolerated(0.31) benign(0.141) TCGA-G3-A3CG-01 12 103310980 103310980 G A PAH 5'UTR 0.27 TCGA-G3-A3CG-01 12 104379508 104379508 T C TDG Splice_Site p.X364_splice 0.30 TCGA-G3-A3CG-01 12 111926327 111926327 T C ATXN2 Silent p.A891A 0.29 TCGA-G3-A3CG-01 12 112613662 112613662 G A HECTD4 Silent p.V3678V 0.24 TCGA-G3-A3CG-01 12 121790151 121790151 C G ANAPC5 5'UTR 0.42 TCGA-G3-A3CG-01 12 26647249 26647249 T A ITPR2 Missense_Mutation p.D1736V 0.30 tolerated(0.06) benign(0.266) TCGA-G3-A3CG-01 12 49743308 49743308 T A DNAJC22 Missense_Mutation p.F218Y 0.07 deleterious(0.01) benign(0.153) TCGA-G3-A3CG-01 12 5024245 5024245 G A KCNA1 3'UTR 0.27 TCGA-G3-A3CG-01 12 51863450 51863450 A C SLC4A8 Missense_Mutation p.S468R 0.09 deleterious(0) probably_damaging(0.999) TCGA-G3-A3CG-01 12 69207366 69207366 A G MDM2 Silent p.L44L 0.07 TCGA-G3-A3CG-01 13 36348674 36348674 A T DCLK1 3'UTR 0.27 TCGA-G3-A3CG-01 13 95858953 95858953 C T ABCC4 Missense_Mutation p.V332M 0.34 tolerated(0.08) benign(0.027) TCGA-G3-A3CG-01 13 96642227 96642227 C T UGGT2 Missense_Mutation p.D311N 0.30 deleterious(0) probably_damaging(1) TCGA-G3-A3CG-01 14 32560165 32560165 A T ARHGAP5 Missense_Mutation p.E97V 0.22 deleterious(0) probably_damaging(1) TCGA-G3-A3CG-01 14 34931375 34931375 C T SPTSSA Missense_Mutation p.M13I 0.16 tolerated(0.39) benign(0.001) TCGA-G3-A3CG-01 14 65208191 65208191 C T PLEKHG3 Silent p.A596A 0.51 TCGA-G3-A3CG-01 14 74196575 74196575 A C ELMSAN1 Silent p.P621P 0.48 TCGA-G3-A3CG-01 14 75513956 75513957 AG - MLH3 Frame_Shift_Del p.S801* 0.15 TCGA-G3-A3CG-01 14 90433726 90433726 G T TDP1 Missense_Mutation p.D207Y 0.44 deleterious(0) probably_damaging(0.995) TCGA-G3-A3CG-01 15 102224289 102224289 T A TARSL2 Missense_Mutation p.T547S 0.27 tolerated(0.11) benign(0.144) TCGA-G3-A3CG-01 15 41865543 41865543 G C TYRO3 Missense_Mutation p.G675R 0.34 deleterious(0) probably_damaging(1) TCGA-G3-A3CG-01 15 49284419 49284419 T C SECISBP2L 3'UTR 0.29 TCGA-G3-A3CG-01 15 72122595 72122595 G A MYO9A Missense_Mutation p.R2299W 0.23 deleterious(0) possibly_damaging(0.614) TCGA-G3-A3CG-01 15 85149971 85149971 T C ZSCAN2 Intron 0.36 TCGA-G3-A3CG-01 15 86123972 86123972 C T AKAP13 Silent p.D891D 0.12 TCGA-G3-A3CG-01 16 29998852 29998852 C T TAOK2 Missense_Mutation p.R1087W 0.43 tolerated_low_confidence(0.09) probably_damaging(0.988) TCGA-G3-A3CG-01 16 447898 447898 G T NME4 Intron 0.23 TCGA-G3-A3CG-01 17 15935796 15935796 G C NCOR1 Silent p.G2379G 0.49 TCGA-G3-A3CG-01 17 15971227 15971227 A - NCOR1 Frame_Shift_Del p.H1575Tfs*40 0.28 TCGA-G3-A3CG-01 17 18907368 18907368 C G FAM83G 5'UTR 0.25 TCGA-G3-A3CG-01 17 20907597 20907597 G A USP22 Missense_Mutation p.R485W 0.31 deleterious(0.01) possibly_damaging(0.825) TCGA-G3-A3CG-01 17 38926059 38926059 A G KRT26 Silent p.L306L 0.08 TCGA-G3-A3CG-01 17 40704921 40704921 C T HSD17B1 5'UTR 0.26 TCGA-G3-A3CG-01 17 44049306 44049306 C T MAPT Missense_Mutation p.A72V 0.30 tolerated(0.22) benign(0.018) TCGA-G3-A3CG-01 17 55058493 55058493 G A SCPEP1 Missense_Mutation p.V43M 0.29 deleterious(0) probably_damaging(0.973) TCGA-G3-A3CG-01 17 59871069 59871069 T C BRIP1 Silent p.E454E 0.07 TCGA-G3-A3CG-01 17 65185736 65185736 T A HELZ Missense_Mutation p.H278L 0.24 tolerated(0.24) benign(0.048) TCGA-G3-A3CG-01 17 7077757 7077757 G A ASGR1 Silent p.H126H 0.35 TCGA-G3-A3CG-01 17 72305541 72305541 C G DNAI2 Intron 0.29 TCGA-G3-A3CG-01 17 7671482 7671482 G T DNAH2 Missense_Mutation p.D1280Y 0.08 probably_damaging(0.995) TCGA-G3-A3CG-01 18 14791433 14791433 T C ANKRD30B Missense_Mutation p.Y590H 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.461) TCGA-G3-A3CG-01 18 3742408 3742408 G T DLGAP1 Missense_Mutation p.A426E 0.31 tolerated(0.22) benign(0.046) TCGA-G3-A3CG-01 18 44626699 44626699 C T KATNAL2 Silent p.I411I 0.18 TCGA-G3-A3CG-01 18 51880863 51880863 A C STARD6 Silent p.V27V 0.34 TCGA-G3-A3CG-01 19 10906847 10906847 T G DNM2 Intron 0.30 TCGA-G3-A3CG-01 19 42753873 42753873 T C ERF Missense_Mutation p.S131G 0.32 deleterious(0.01) possibly_damaging(0.599) TCGA-G3-A3CG-01 19 4510594 4510594 C T PLIN4 Silent p.G1112G 0.29 TCGA-G3-A3CG-01 19 45488528 45488528 A G CLPTM1 Silent p.T213T 0.44 TCGA-G3-A3CG-01 19 48219967 48219967 T A EHD2 Missense_Mutation p.L33Q 0.26 deleterious(0) probably_damaging(0.982) TCGA-G3-A3CG-01 19 52617961 52617961 C G ZNF616 3'UTR 0.50 TCGA-G3-A3CG-01 19 55592800 55592800 C A EPS8L1 Silent p.A238A 0.41 TCGA-G3-A3CG-01 19 55898278 55898278 A C RPL28 Intron 0.18 TCGA-G3-A3CG-01 1 11082983 11082983 G C TARDBP 3'UTR 0.46 TCGA-G3-A3CG-01 1 111060286 111060286 A T KCNA10 Nonsense_Mutation p.L375* 0.22 TCGA-G3-A3CG-01 1 117087065 117087065 T A CD58 Nonsense_Mutation p.K78* 0.36 TCGA-G3-A3CG-01 1 149859298 149859298 C A HIST2H2AB Nonsense_Mutation p.E57* 0.22 TCGA-G3-A3CG-01 1 150471707 150471707 C G TARS2 Missense_Mutation p.L519V 0.47 deleterious(0) possibly_damaging(0.872) TCGA-G3-A3CG-01 1 154319146 154319146 G T ATP8B2 Missense_Mutation p.W1058C 0.30 deleterious(0) probably_damaging(0.999) TCGA-G3-A3CG-01 1 155148089 155148089 C A TRIM46 Silent p.P97P 0.37 TCGA-G3-A3CG-01 1 155167450 155167456 CCTGGGG AATTGGGT THBS3 Splice_Site p.X768_splice 0.11 TCGA-G3-A3CG-01 1 155734765 155734765 A G GON4L Intron 0.17 TCGA-G3-A3CG-01 1 157514336 157514336 T C FCRL5 Missense_Mutation p.E187G 0.54 deleterious(0.02) benign(0.396) TCGA-G3-A3CG-01 1 171072961 171072961 A G FMO3 Silent p.K56K 0.53 TCGA-G3-A3CG-01 1 175348689 175348689 T C TNR Silent p.T654T 0.15 TCGA-G3-A3CG-01 1 179523629 179523629 T A NPHS2 Missense_Mutation p.K259I 0.03 deleterious(0) probably_damaging(0.963) TCGA-G3-A3CG-01 1 185267396 185267396 A T IVNS1ABP Missense_Mutation p.F567Y 0.57 tolerated(0.95) benign(0.137) TCGA-G3-A3CG-01 1 185267406 185267406 A C IVNS1ABP Missense_Mutation p.C564G 0.58 tolerated(0.23) benign(0) TCGA-G3-A3CG-01 1 190067205 190067205 C T BRINP3 Silent p.A748A 0.12 TCGA-G3-A3CG-01 1 19452947 19452947 T C UBR4 Missense_Mutation p.Y3144C 0.30 probably_damaging(0.922) TCGA-G3-A3CG-01 1 223179204 223179204 G C DISP1 Missense_Mutation p.V1489L 0.15 tolerated_low_confidence(0.23) benign(0.002) TCGA-G3-A3CG-01 1 225273418 225273419 - A DNAH14 Frame_Shift_Ins p.S246Ifs*15 0.13 TCGA-G3-A3CG-01 1 228336428 228336428 C A GUK1 Missense_Mutation p.P201T 0.33 deleterious_low_confidence(0.04) benign(0.005) TCGA-G3-A3CG-01 1 248436937 248436937 G T OR2T33 Silent p.L60L 0.50 TCGA-G3-A3CG-01 1 27102114 27102139 CCTGGCAGAGAGCACATGGGCATTAG TC ARID1A In_Frame_Del p.L1681_D1689delinsH 0.14 TCGA-G3-A3CG-01 1 3414980 3414980 G A MEGF6 Missense_Mutation p.R1103C 0.12 deleterious(0.04) benign(0.015) TCGA-G3-A3CG-01 1 41012332 41012332 A G ZNF684 Missense_Mutation p.M113V 0.43 tolerated(0.32) benign(0.001) TCGA-G3-A3CG-01 1 41283964 41283964 T C KCNQ4 Splice_Site p.X178_splice 0.37 TCGA-G3-A3CG-01 1 42914250 42914250 G A ZMYND12 Silent p.H104H 0.33 TCGA-G3-A3CG-01 1 43869391 43869391 T G SZT2 Silent p.A91A 0.33 TCGA-G3-A3CG-01 1 76198378 76198378 C T ACADM Silent p.A60A 0.28 TCGA-G3-A3CG-01 1 909846 909855 GGGACCCCGG - PLEKHN1 Frame_Shift_Del p.R576Pfs*55 0.29 TCGA-G3-A3CG-01 20 44512857 44512857 T C ZSWIM1 3'UTR 0.36 TCGA-G3-A3CG-01 21 30715225 30715225 T G BACH1 3'UTR 0.48 TCGA-G3-A3CG-01 21 30715241 30715241 A C BACH1 3'UTR 0.55 TCGA-G3-A3CG-01 21 30715263 30715263 A C BACH1 3'UTR 0.56 TCGA-G3-A3CG-01 21 32490978 32490978 C A TIAM1 3'UTR 0.11 TCGA-G3-A3CG-01 21 43221645 43221645 C T PRDM15 Missense_Mutation p.V1427I 0.62 tolerated_low_confidence(0.84) benign(0.004) TCGA-G3-A3CG-01 22 24615886 24615886 G T GGT5 3'UTR 0.27 TCGA-G3-A3CG-01 22 42474402 42474403 TG - FAM109B 3'UTR 0.15 TCGA-G3-A3CG-01 22 50854528 50854528 A G PPP6R2 Missense_Mutation p.N187S 0.26 deleterious(0.02) benign(0.331) TCGA-G3-A3CG-01 2 1895915 1895915 A C MYT1L Missense_Mutation p.M724R 0.07 tolerated(0.18) possibly_damaging(0.851) TCGA-G3-A3CG-01 2 241814588 241814588 C T AGXT Missense_Mutation p.A248V 0.28 deleterious(0) possibly_damaging(0.685) TCGA-G3-A3CG-01 2 27656275 27656275 A T NRBP1 Missense_Mutation p.E45D 0.38 tolerated(0.22) possibly_damaging(0.899) TCGA-G3-A3CG-01 2 46808469 46808469 G A RHOQ 3'UTR 0.33 TCGA-G3-A3CG-01 2 54858167 54858167 C T SPTBN1 Nonsense_Mutation p.Q995* 0.33 TCGA-G3-A3CG-01 2 71708030 71708030 A T DYSF Nonsense_Mutation p.K37* 0.38 TCGA-G3-A3CG-01 3 114018526 114018526 C A TIGIT Silent p.I158I 0.06 TCGA-G3-A3CG-01 3 160148405 160148405 A G SMC4 Silent p.Q938Q 0.34 TCGA-G3-A3CG-01 3 23959939 23959939 A G RPL15 Missense_Mutation p.I61V 0.22 tolerated(0.39) benign(0.011) TCGA-G3-A3CG-01 3 49167709 49167711 AGA - LAMB2 In_Frame_Del p.F393del 0.28 TCGA-G3-A3CG-01 3 97852336 97852336 G A OR5H1 Silent p.P265P 0.26 TCGA-G3-A3CG-01 4 113578619 113578619 A G LARP7 3'UTR 0.45 TCGA-G3-A3CG-01 4 123332460 123332460 C T ADAD1 Missense_Mutation p.S311F 0.13 deleterious(0) probably_damaging(0.992) TCGA-G3-A3CG-01 4 152593987 152593987 T A PET112 Missense_Mutation p.Q491L 0.18 tolerated(0.08) benign(0.102) TCGA-G3-A3CG-01 4 164393283 164393283 A T TKTL2 Missense_Mutation p.V535D 0.27 deleterious(0) probably_damaging(0.991) TCGA-G3-A3CG-01 4 2906529 2906529 G T ADD1 Silent p.L400L 0.21 TCGA-G3-A3CG-01 4 39747379 39747379 A T UBE2K Missense_Mutation p.R55S 0.43 tolerated(0.6) benign(0.025) TCGA-G3-A3CG-01 4 46995548 46995548 T C GABRA4 5'UTR 0.38 TCGA-G3-A3CG-01 4 74864222 74864222 A G CXCL5 Missense_Mutation p.L26P 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-G3-A3CG-01 4 76415820 76415820 G A RCHY1 Missense_Mutation p.P210S 0.44 deleterious(0.01) possibly_damaging(0.901) TCGA-G3-A3CG-01 5 131811707 131811707 T G AC116366.6 5'Flank 0.27 TCGA-G3-A3CG-01 5 140572961 140572961 A G PCDHB10 Missense_Mutation p.Y279C 0.07 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-G3-A3CG-01 5 147788757 147788757 C A FBXO38 Nonsense_Mutation p.Y313* 0.24 TCGA-G3-A3CG-01 5 148699221 148699221 C T AFAP1L1 Missense_Mutation p.A519V 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-G3-A3CG-01 5 151784407 151784407 A T NMUR2 Missense_Mutation p.S90T 0.50 deleterious(0) probably_damaging(0.959) TCGA-G3-A3CG-01 5 155484 155484 T A PLEKHG4B Missense_Mutation p.C356S 0.41 deleterious(0) probably_damaging(0.998) TCGA-G3-A3CG-01 5 179956371 179956371 C G CNOT6 Missense_Mutation p.A32G 0.21 tolerated(0.12) benign(0.044) TCGA-G3-A3CG-01 5 33684042 33684042 C A ADAMTS12 Silent p.L251L 0.57 TCGA-G3-A3CG-01 6 136599813 136599813 C A BCLAF1 Missense_Mutation p.R69L 0.23 deleterious_low_confidence(0) unknown(0) TCGA-G3-A3CG-01 6 144184786 144184786 T G LTV1 3'UTR 0.46 TCGA-G3-A3CG-01 6 161158038 161158038 A C PLG Silent p.R601R 0.75 TCGA-G3-A3CG-01 6 25779545 25779545 T G SLC17A4 3'UTR 0.52 TCGA-G3-A3CG-01 6 27220676 27220676 T C PRSS16 Silent p.S366S 0.39 TCGA-G3-A3CG-01 6 39513359 39513359 C T KIF6 Silent p.K429K 0.38 TCGA-G3-A3CG-01 7 121023047 121023047 C T FAM3C 5'UTR 0.23 TCGA-G3-A3CG-01 7 138845777 138845777 C T TTC26 Intron 0.06 TCGA-G3-A3CG-01 7 2403395 2403395 G A EIF3B Silent p.A333A 0.39 TCGA-G3-A3CG-01 7 48147063 48147063 C T UPP1 Missense_Mutation p.S251F 0.20 deleterious(0) probably_damaging(0.995) TCGA-G3-A3CG-01 7 48317894 48317894 C A ABCA13 Missense_Mutation p.A2368D 0.40 benign(0.003) TCGA-G3-A3CG-01 7 51097117 51097117 T C COBL Missense_Mutation p.N559S 0.20 tolerated(0.13) benign(0.098) TCGA-G3-A3CG-01 7 7413028 7413028 T G COL28A1 Missense_Mutation p.I837L 0.20 deleterious(0.05) benign(0.257) TCGA-G3-A3CG-01 7 82583240 82583240 T C PCLO Silent p.P2343P 0.27 TCGA-G3-A3CG-01 7 99021532 99021532 C A ATP5J2-PTCD1 Missense_Mutation p.A645S 0.44 tolerated(0.22) possibly_damaging(0.449) TCGA-G3-A3CG-01 8 139890424 139890424 C A COL22A1 Missense_Mutation p.R76L 0.31 unknown(0) TCGA-G3-A3CG-01 8 143833938 143833938 G C LYPD2 5'UTR 0.15 TCGA-G3-A3CG-01 8 145697525 145697526 CT - KIFC2 Frame_Shift_Del p.P498* 0.23 TCGA-G3-A3CG-01 8 1952832 1952832 C T KBTBD11 3'UTR 0.06 TCGA-G3-A3CG-01 8 3200972 3200972 C A CSMD1 Missense_Mutation p.V1159L 0.47 benign(0.359) TCGA-G3-A3CG-01 8 52321315 52321315 C A PXDNL Missense_Mutation p.G957W 0.20 deleterious(0) probably_damaging(1) TCGA-G3-A3CG-01 9 100437687 100437687 A G XPA 3'UTR 0.51 TCGA-G3-A3CG-01 9 124855592 124855592 C A TTLL11 Missense_Mutation p.A36S 0.44 tolerated_low_confidence(0.11) benign(0.04) TCGA-G3-A3CG-01 9 130887595 130887595 C G PTGES2 Silent p.V135V 0.45 TCGA-G3-A3CG-01 9 130887600 130887600 G A PTGES2 Missense_Mutation p.P134S 0.44 tolerated(0.07) probably_damaging(1) TCGA-G3-A3CG-01 9 131105476 131105476 G C SLC27A4 Missense_Mutation p.W22S 0.48 deleterious(0) probably_damaging(0.999) TCGA-G3-A3CG-01 9 131670047 131670047 A G LRRC8A Missense_Mutation p.S202G 0.31 tolerated(0.2) possibly_damaging(0.878) TCGA-G3-A3CG-01 9 4688579 4688579 A C CDC37L1 Missense_Mutation p.K161Q 0.32 deleterious(0) benign(0.345) TCGA-G3-A3CG-01 9 69200103 69200103 C G FOXD4L6 3'UTR 0.28 TCGA-G3-A3CG-01 9 71869305 71869305 A G TJP2 3'UTR 0.37 TCGA-G3-A3CG-01 9 97221814 97221814 T C HIATL1 3'UTR 0.31 TCGA-G3-A3CG-01 X 119059318 119059318 G T NKAP Missense_Mutation p.N371K 0.79 deleterious(0) unknown(0) TCGA-G3-A3CG-01 X 48661291 48661291 A G HDAC6 Missense_Mutation p.K36R 0.65 tolerated(0.19) probably_damaging(0.949) TCGA-G3-A3CH-01 10 5043738 5043738 C T AKR1C2 Missense_Mutation p.V74M 0.06 deleterious(0) probably_damaging(0.984) TCGA-G3-A3CH-01 10 61005153 61005174 GACCTGTACAGAAGAAGATGGG - PHYHIPL Frame_Shift_Del p.T312Cfs*12 0.21 TCGA-G3-A3CH-01 11 10580711 10580711 C T LYVE1 Missense_Mutation p.E306K 0.30 deleterious(0) probably_damaging(0.929) TCGA-G3-A3CH-01 11 5462320 5462320 C T OR51I1 Missense_Mutation p.R142H 0.40 tolerated(0.12) benign(0.025) TCGA-G3-A3CH-01 11 61100449 61100449 T C DDB1 5'UTR 0.25 TCGA-G3-A3CH-01 12 101333093 101333093 T A ANO4 Missense_Mutation p.V19E 0.22 tolerated_low_confidence(0.25) benign(0.001) TCGA-G3-A3CH-01 12 129190073 129190073 C T TMEM132C Nonsense_Mutation p.R854* 0.30 TCGA-G3-A3CH-01 12 88478474 88478474 A C CEP290 Silent p.S1531S 0.35 TCGA-G3-A3CH-01 13 48954378 48954378 G - RB1 Splice_Site p.X500_splice 0.29 TCGA-G3-A3CH-01 14 105196358 105196358 T C ADSSL1 Silent p.S43S 0.11 TCGA-G3-A3CH-01 15 82336764 82336764 G T MEX3B Silent p.G149G 0.56 TCGA-G3-A3CH-01 15 82336765 82336765 C T MEX3B Missense_Mutation p.G149D 0.56 deleterious(0) possibly_damaging(0.691) TCGA-G3-A3CH-01 16 3543984 3543984 G A C16orf90 Missense_Mutation p.S135F 0.40 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-G3-A3CH-01 16 3713391 3713391 C A TRAP1 Intron 0.21 TCGA-G3-A3CH-01 16 50357553 50357553 A T BRD7 Nonsense_Mutation p.L463* 0.52 TCGA-G3-A3CH-01 17 34136530 34136530 T A TAF15 5'UTR 0.36 TCGA-G3-A3CH-01 18 60795937 60795937 C T BCL2 Nonsense_Mutation p.W214* 0.37 TCGA-G3-A3CH-01 19 15198366 15198366 G A OR1I1 Missense_Mutation p.A164T 0.14 tolerated(0.24) possibly_damaging(0.669) TCGA-G3-A3CH-01 19 18368567 18368567 C T KIAA1683 Missense_Mutation p.R1176H 0.36 deleterious(0) probably_damaging(0.999) TCGA-G3-A3CH-01 19 44660620 44660620 G T ZNF234 Missense_Mutation p.D151Y 0.06 deleterious(0) benign(0.001) TCGA-G3-A3CH-01 1 151546769 151546769 G C TUFT1 Missense_Mutation p.R206S 0.06 deleterious(0.01) benign(0.341) TCGA-G3-A3CH-01 1 15541828 15541828 G A TMEM51 Missense_Mutation p.C82Y 0.29 tolerated(0.06) probably_damaging(0.915) TCGA-G3-A3CH-01 1 176564726 176564726 C T PAPPA2 Silent p.P662P 0.35 TCGA-G3-A3CH-01 1 235937265 235937265 T A LYST Missense_Mutation p.E1887D 0.31 tolerated(0.38) benign(0.119) TCGA-G3-A3CH-01 1 247875185 247875185 C T OR6F1 Silent p.T291T 0.29 TCGA-G3-A3CH-01 1 32741956 32741956 G A LCK Missense_Mutation p.C217Y 0.14 deleterious(0) possibly_damaging(0.875) TCGA-G3-A3CH-01 1 85647886 85647886 T C SYDE2 Missense_Mutation p.I813M 0.04 tolerated(0.32) benign(0.025) TCGA-G3-A3CH-01 21 43529725 43529725 T A UMODL1 Missense_Mutation p.C525S 0.60 deleterious(0) probably_damaging(0.999) TCGA-G3-A3CH-01 2 103317675 103317675 C T SLC9A2 Missense_Mutation p.T578I 0.13 deleterious(0.05) benign(0.085) TCGA-G3-A3CH-01 2 1241722 1241722 C G SNTG2 Missense_Mutation p.T261R 0.29 deleterious(0.03) possibly_damaging(0.822) TCGA-G3-A3CH-01 2 217347711 217347711 A C SMARCAL1 3'UTR 0.07 TCGA-G3-A3CH-01 2 228884827 228884827 T A SPHKAP Missense_Mutation p.Q248L 0.29 tolerated(0.06) benign(0.027) TCGA-G3-A3CH-01 2 240923110 240923110 C T NDUFA10 Intron 0.09 TCGA-G3-A3CH-01 2 36739445 36739445 G A CRIM1 Missense_Mutation p.R563H 0.05 deleterious(0) probably_damaging(0.996) TCGA-G3-A3CH-01 2 37306331 37306331 C A HEATR5B Missense_Mutation p.Q90H 0.33 deleterious(0.02) possibly_damaging(0.605) TCGA-G3-A3CH-01 2 71582860 71582860 G A ZNF638 Silent p.Q443Q 0.03 TCGA-G3-A3CH-01 3 130354582 130354582 C A COL6A6 Missense_Mutation p.L1690M 0.43 deleterious(0.01) benign(0.109) TCGA-G3-A3CH-01 3 134366278 134366278 G A KY Silent p.H66H 0.28 TCGA-G3-A3CH-01 3 184020202 184020202 G A PSMD2 Missense_Mutation p.R250H 0.28 tolerated(0.11) benign(0.002) TCGA-G3-A3CH-01 3 58084513 58084513 A G FLNB Missense_Mutation p.D408G 0.04 deleterious(0.03) possibly_damaging(0.803) TCGA-G3-A3CH-01 3 72890225 72890225 A T SHQ1 Missense_Mutation p.L153I 0.38 deleterious(0.04) possibly_damaging(0.512) TCGA-G3-A3CH-01 4 144135888 144135888 G T USP38 Missense_Mutation p.R920I 0.34 deleterious(0) probably_damaging(1) TCGA-G3-A3CH-01 4 144359739 144359739 A G GAB1 Missense_Mutation p.N394S 0.05 tolerated(1) benign(0.009) TCGA-G3-A3CH-01 5 192439 192439 C T LRRC14B Silent p.D262D 0.31 TCGA-G3-A3CH-01 5 462403 462403 A G EXOC3 Missense_Mutation p.E545G 0.10 deleterious(0) probably_damaging(0.982) TCGA-G3-A3CH-01 6 118880745 118880745 C T PLN 3'UTR 0.33 TCGA-G3-A3CH-01 6 12121666 12121666 G A HIVEP1 Silent p.L546L 0.31 TCGA-G3-A3CH-01 6 13604846 13604846 C T SIRT5 Intron 0.21 TCGA-G3-A3CH-01 6 30673414 30673414 G A MDC1 Silent p.P1182P 0.32 TCGA-G3-A3CH-01 6 32130607 32130607 G A PPT2 Silent p.G269G 0.26 TCGA-G3-A3CH-01 6 56469970 56469970 G C DST Intron 0.07 TCGA-G3-A3CH-01 6 65612308 65612308 G A EYS Silent p.V909V 0.39 TCGA-G3-A3CH-01 7 100211234 100211234 C T MOSPD3 Missense_Mutation p.A139V 0.38 tolerated(0.05) benign(0.014) TCGA-G3-A3CH-01 7 150070460 150070460 A C REPIN1 3'Flank 0.25 TCGA-G3-A3CH-01 7 94294842 94294842 C T PEG10 3'UTR 0.39 TCGA-G3-A3CH-01 8 145580146 145580146 G C FBXL6 Missense_Mutation p.R347G 0.30 deleterious(0.02) benign(0.274) TCGA-G3-A3CH-01 8 7673223 7673223 T C DEFB107A 5'UTR 0.12 TCGA-G3-A3CH-01 9 140057102 140057102 A G GRIN1 Missense_Mutation p.I663V 0.45 deleterious(0) probably_damaging(0.999) TCGA-G3-A3CH-01 9 35810300 35810300 C G SPAG8 Missense_Mutation p.D403H 0.31 deleterious(0) probably_damaging(0.997) TCGA-G3-A3CH-01 9 84606921 84606921 C T SPATA31D1 Silent p.S512S 0.21 TCGA-G3-A3CI-01 10 104597036 104597036 G T CYP17A1 Missense_Mutation p.P28H 0.19 deleterious(0) probably_damaging(0.999) TCGA-G3-A3CI-01 10 18964121 18964121 G A ARL5B Missense_Mutation p.M172I 0.20 tolerated(0.29) benign(0.003) TCGA-G3-A3CI-01 11 113629311 113629311 A G ZW10 Missense_Mutation p.V233A 0.04 tolerated(0.17) benign(0.016) TCGA-G3-A3CI-01 11 64367214 64367214 C T SLC22A12 Silent p.F379F 0.22 TCGA-G3-A3CI-01 11 86106289 86106289 A G CCDC81 Intron 0.18 TCGA-G3-A3CI-01 14 24802167 24802167 T C ADCY4 Missense_Mutation p.T63A 0.17 tolerated(0.79) benign(0) TCGA-G3-A3CI-01 14 70490056 70490056 G A SMOC1 Missense_Mutation p.A395T 0.21 tolerated(0.06) probably_damaging(0.999) TCGA-G3-A3CI-01 17 3336389 3336389 A T OR1E2 Silent p.T249T 0.19 TCGA-G3-A3CI-01 19 1004833 1004833 T C GRIN3B Missense_Mutation p.C445R 0.13 deleterious(0) probably_damaging(1) TCGA-G3-A3CI-01 19 57640050 57640050 T A USP29 Missense_Mutation p.S3T 0.22 tolerated(0.91) benign(0.112) TCGA-G3-A3CI-01 19 58214112 58214112 T C ZNF154 Missense_Mutation p.S69G 0.06 tolerated(0.26) benign(0.007) TCGA-G3-A3CI-01 1 207787833 207787833 A C CR1 Missense_Mutation p.E2220D 0.18 deleterious(0.04) possibly_damaging(0.681) TCGA-G3-A3CI-01 1 56989987 56989987 G A PPAP2B Silent p.Y179Y 0.19 TCGA-G3-A3CI-01 1 6531606 6531606 T C PLEKHG5 Missense_Mutation p.K487R 0.12 tolerated(0.17) benign(0.11) TCGA-G3-A3CI-01 1 7906821 7906821 T C UTS2 3'Flank 0.07 TCGA-G3-A3CI-01 21 33641227 33641227 G C MIS18A 3'UTR 0.21 TCGA-G3-A3CI-01 21 45833800 45833800 A T TRPM2 Missense_Mutation p.S997C 0.19 deleterious(0) probably_damaging(0.981) TCGA-G3-A3CI-01 2 152466364 152466364 C G NEB Missense_Mutation p.D4097H 0.08 probably_damaging(0.997) TCGA-G3-A3CI-01 2 158637052 158637052 C T ACVR1 Missense_Mutation p.G43D 0.06 tolerated(0.59) benign(0.01) TCGA-G3-A3CI-01 2 21249790 21249790 A G APOB Missense_Mutation p.F705S 0.16 probably_damaging(0.999) TCGA-G3-A3CI-01 2 228159735 228159735 A G COL4A3 Silent p.G1158G 0.14 TCGA-G3-A3CI-01 2 241922365 241922365 G T AC104809.2 RNA 0.19 TCGA-G3-A3CI-01 2 84972221 84972221 A G DNAH6 Missense_Mutation p.I3454V 0.27 tolerated(0.13) benign(0.005) TCGA-G3-A3CI-01 3 172365871 172365871 G A NCEH1 Missense_Mutation p.H90Y 0.17 tolerated(0.81) probably_damaging(0.917) TCGA-G3-A3CI-01 3 51863472 51863472 C A IQCF3 5'UTR 0.21 TCGA-G3-A3CI-01 5 168189663 168189663 G A SLIT3 Silent p.S497S 0.17 TCGA-G3-A3CI-01 9 134053778 134053778 A G NUP214 Missense_Mutation p.T1134A 0.30 benign(0.018) TCGA-G3-A3CI-01 X 107823959 107823959 A G COL4A5 Silent p.P294P 0.05 TCGA-G3-A3CK-01 10 1090122 1090123 - GGAAAAG IDI1 Intron 0.29 TCGA-G3-A3CK-01 10 121616890 121616890 T C MCMBP Missense_Mutation p.Y130C 0.36 deleterious(0) probably_damaging(1) TCGA-G3-A3CK-01 10 134161592 134161592 C T LRRC27 Missense_Mutation p.P220S 0.39 tolerated(0.28) probably_damaging(0.968) TCGA-G3-A3CK-01 10 27337837 27337837 A C ANKRD26 Silent p.T569T 0.31 TCGA-G3-A3CK-01 10 45499035 45499035 C A ZNF22 Missense_Mutation p.H73Q 0.27 deleterious(0) probably_damaging(0.994) TCGA-G3-A3CK-01 10 45891384 45891384 G T ALOX5 Missense_Mutation p.R144L 0.32 deleterious(0) possibly_damaging(0.686) TCGA-G3-A3CK-01 11 111784419 111784419 T C HSPB2 Missense_Mutation p.F117L 0.41 deleterious(0) possibly_damaging(0.874) TCGA-G3-A3CK-01 11 113619110 113619110 T G ZW10 Missense_Mutation p.K320Q 0.34 tolerated(0.05) benign(0.261) TCGA-G3-A3CK-01 11 11373655 11373655 T C CSNK2A3 Missense_Mutation p.S338G 0.42 tolerated_low_confidence(0.19) benign(0) TCGA-G3-A3CK-01 11 114113007 114113007 C T ZBTB16 Silent p.N524N 0.38 TCGA-G3-A3CK-01 11 1860927 1860927 A T TNNI2 Translation_Start_Site p.M1? 0.29 tolerated(0.13) benign(0.004) TCGA-G3-A3CK-01 11 35006206 35006206 A C PDHX Missense_Mutation p.K371N 0.21 tolerated(0.16) possibly_damaging(0.744) TCGA-G3-A3CK-01 11 43411274 43411274 A G TTC17 Missense_Mutation p.N108D 0.31 tolerated(0.81) possibly_damaging(0.643) TCGA-G3-A3CK-01 11 61131920 61131920 T C TMEM138 Missense_Mutation p.Y20H 0.34 tolerated(0.2) probably_damaging(0.943) TCGA-G3-A3CK-01 11 6231167 6231167 A C C11orf42 Missense_Mutation p.K54Q 0.31 tolerated(0.08) probably_damaging(0.983) TCGA-G3-A3CK-01 11 62554224 62554224 G C TAF6L Missense_Mutation p.R442P 0.39 tolerated(0.27) benign(0.286) TCGA-G3-A3CK-01 11 62931493 62931493 C A SLC22A25 Missense_Mutation p.A483S 0.34 tolerated(0.25) benign(0.344) TCGA-G3-A3CK-01 11 64877952 64877952 A G VPS51 Splice_Site p.X627_splice 0.39 TCGA-G3-A3CK-01 11 65293085 65293085 A C SCYL1 Missense_Mutation p.K51T 0.31 tolerated(0.05) benign(0.199) TCGA-G3-A3CK-01 11 66618658 66618658 C G PC Silent p.A692A 0.42 TCGA-G3-A3CK-01 11 67163617 67163617 T A RAD9A Missense_Mutation p.N235K 0.36 deleterious(0) benign(0.156) TCGA-G3-A3CK-01 11 67163618 67163618 C G RAD9A Missense_Mutation p.L236V 0.36 tolerated(0.89) benign(0.035) TCGA-G3-A3CK-01 11 6977459 6977459 C A ZNF215 Missense_Mutation p.N417K 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-G3-A3CK-01 12 104698075 104698075 C T EID3 Silent p.D121D 0.32 TCGA-G3-A3CK-01 12 108932816 108932816 A C SART3 Missense_Mutation p.F319C 0.39 deleterious(0) probably_damaging(0.91) TCGA-G3-A3CK-01 12 111884570 111884570 A C SH2B3 Missense_Mutation p.K249T 0.38 deleterious(0.03) probably_damaging(0.938) TCGA-G3-A3CK-01 12 38714457 38714457 T C ALG10B Silent p.F288F 0.36 TCGA-G3-A3CK-01 12 51323788 51323788 T - METTL7A Frame_Shift_Del p.L198Cfs*7 0.19 TCGA-G3-A3CK-01 12 53227630 53227630 G A KRT79 Missense_Mutation p.R139C 0.36 deleterious(0) probably_damaging(0.998) TCGA-G3-A3CK-01 12 56089347 56089347 G C ITGA7 Missense_Mutation p.F658L 0.04 deleterious(0.02) probably_damaging(0.99) TCGA-G3-A3CK-01 12 56708923 56708923 G A CNPY2 Missense_Mutation p.H27Y 0.37 tolerated(1) benign(0.005) TCGA-G3-A3CK-01 12 57601983 57601983 G A LRP1 Missense_Mutation p.V4008M 0.29 probably_damaging(0.938) TCGA-G3-A3CK-01 12 57911095 57911095 T A DDIT3 Missense_Mutation p.D55V 0.06 deleterious(0.02) probably_damaging(0.925) TCGA-G3-A3CK-01 12 62929480 62929480 T C MON2 Missense_Mutation p.S631P 0.35 tolerated(0.34) benign(0.003) TCGA-G3-A3CK-01 12 6673088 6673088 G A NOP2 Missense_Mutation p.R200W 0.35 deleterious(0) possibly_damaging(0.841) TCGA-G3-A3CK-01 12 72070666 72070666 C T THAP2 Silent p.C155C 0.33 TCGA-G3-A3CK-01 12 76425350 76425350 C T PHLDA1 Missense_Mutation p.D58N 0.42 tolerated_low_confidence(0.06) benign(0.004) TCGA-G3-A3CK-01 12 9221388 9221388 T C A2M Silent p.P1438P 0.20 TCGA-G3-A3CK-01 13 108922722 108922722 C T TNFSF13B Missense_Mutation p.S125F 0.37 tolerated(0.09) possibly_damaging(0.522) TCGA-G3-A3CK-01 13 32371491 32371491 A C RXFP2 Missense_Mutation p.D647A 0.41 deleterious(0) possibly_damaging(0.84) TCGA-G3-A3CK-01 13 45915280 45915280 G A TPT1 5'UTR 0.31 TCGA-G3-A3CK-01 13 48832330 48832330 T C ITM2B Silent p.V174V 0.05 TCGA-G3-A3CK-01 13 99853763 99853763 G A UBAC2 Intron 0.33 TCGA-G3-A3CK-01 14 105818768 105818768 A C PACS2 Missense_Mutation p.Q87H 0.35 tolerated(0.48) benign(0.002) TCGA-G3-A3CK-01 14 20215878 20215878 T C OR4Q3 Missense_Mutation p.C98R 0.40 deleterious(0) probably_damaging(0.997) TCGA-G3-A3CK-01 14 24031766 24031766 C - AP1G2 Frame_Shift_Del p.E483Sfs*50 0.22 TCGA-G3-A3CK-01 14 36785921 36785921 T G MBIP Missense_Mutation p.E76A 0.28 deleterious(0.01) possibly_damaging(0.702) TCGA-G3-A3CK-01 14 44974659 44974659 G A FSCB Missense_Mutation p.P511L 0.33 deleterious(0.05) benign(0.387) TCGA-G3-A3CK-01 14 58895077 58895077 A G KIAA0586 Missense_Mutation p.H44R 0.32 tolerated(0.12) benign(0.004) TCGA-G3-A3CK-01 14 65008467 65008467 C T HSPA2 Silent p.I300I 0.37 TCGA-G3-A3CK-01 14 75190045 75190045 A C FCF1 Silent p.L121L 0.35 TCGA-G3-A3CK-01 14 77873885 77873885 A G NOXRED1 Silent p.N151N 0.34 TCGA-G3-A3CK-01 14 78021746 78021746 C T SPTLC2 Missense_Mutation p.G358D 0.37 deleterious(0) probably_damaging(0.998) TCGA-G3-A3CK-01 14 93154522 93154522 G T RIN3 Silent p.R961R 0.43 TCGA-G3-A3CK-01 14 93154523 93154523 C T RIN3 Missense_Mutation p.P962S 0.44 deleterious(0.03) possibly_damaging(0.717) TCGA-G3-A3CK-01 15 28482110 28482110 G A HERC2 Silent p.A1334A 0.35 TCGA-G3-A3CK-01 15 30011153 30011153 T C TJP1 Missense_Mutation p.S1065G 0.29 tolerated_low_confidence(0.87) benign(0) TCGA-G3-A3CK-01 15 45003695 45003695 G A B2M 5'UTR 0.42 TCGA-G3-A3CK-01 15 63943568 63943568 G A HERC1 Missense_Mutation p.A3477V 0.41 benign(0.003) TCGA-G3-A3CK-01 15 63967194 63967194 T A HERC1 Missense_Mutation p.Y2398F 0.31 benign(0.002) TCGA-G3-A3CK-01 15 78837279 78837279 A T PSMA4 Missense_Mutation p.Q119L 0.31 deleterious(0) probably_damaging(0.995) TCGA-G3-A3CK-01 15 80478636 80478636 G T FAH 3'UTR 0.35 TCGA-G3-A3CK-01 15 90773726 90773726 A C CIB1 Missense_Mutation p.I189S 0.33 deleterious(0) probably_damaging(0.976) TCGA-G3-A3CK-01 16 10273990 10273990 T C GRIN2A Silent p.A93A 0.19 TCGA-G3-A3CK-01 16 11035558 11035558 G A DEXI 3'UTR 0.07 TCGA-G3-A3CK-01 16 11647418 11647418 C A LITAF Missense_Mutation p.W116C 0.28 deleterious(0) probably_damaging(1) TCGA-G3-A3CK-01 16 2140513 2140513 T C PKD1 Missense_Mutation p.T4073A 0.37 benign(0.004) TCGA-G3-A3CK-01 16 27788950 27788950 T G KIAA0556 Missense_Mutation p.L1524R 0.35 deleterious(0) probably_damaging(0.994) TCGA-G3-A3CK-01 16 48596057 48596057 G A N4BP1 Missense_Mutation p.A166V 0.32 tolerated(0.08) possibly_damaging(0.694) TCGA-G3-A3CK-01 16 53358774 53358774 A C CHD9 Silent p.S2871S 0.33 TCGA-G3-A3CK-01 16 53737973 53737973 T G FTO 5'UTR 0.31 TCGA-G3-A3CK-01 16 56443342 56443342 A G AMFR Silent p.F169F 0.29 TCGA-G3-A3CK-01 16 677600 677600 G C RAB40C Missense_Mutation p.R275P 0.27 deleterious_low_confidence(0) benign(0.069) TCGA-G3-A3CK-01 16 84216853 84216853 C T TAF1C Silent p.A135A 0.38 TCGA-G3-A3CK-01 17 12642602 12642602 T G MYOCD Missense_Mutation p.L225R 0.44 tolerated(0.5) benign(0.042) TCGA-G3-A3CK-01 17 15406305 15406305 T A TVP23C Missense_Mutation p.Q235L 0.30 tolerated_low_confidence(0.2) benign(0.017) TCGA-G3-A3CK-01 17 15546090 15546090 A C RP11-385D13.1 Missense_Mutation p.L187R 0.21 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-G3-A3CK-01 17 17875730 17875730 A G TOM1L2 5'Flank 0.31 TCGA-G3-A3CK-01 17 25928943 25928943 A C KSR1 Missense_Mutation p.K375T 0.28 tolerated(0.44) benign(0) TCGA-G3-A3CK-01 17 29496954 29496954 T C NF1 Silent p.H175H 0.33 TCGA-G3-A3CK-01 17 35631111 35631111 A G ACACA Silent p.Y327Y 0.31 TCGA-G3-A3CK-01 17 37026422 37026422 G A LASP1 5'UTR 0.33 TCGA-G3-A3CK-01 17 37026423 37026423 C A LASP1 5'UTR 0.33 TCGA-G3-A3CK-01 17 39140461 39140461 G A KRT40 Missense_Mutation p.A22V 0.42 tolerated(0.19) benign(0.001) TCGA-G3-A3CK-01 17 47390068 47390068 T C ZNF652 Missense_Mutation p.H347R 0.26 deleterious(0) probably_damaging(0.997) TCGA-G3-A3CK-01 17 47781491 47781491 T G SLC35B1 Missense_Mutation p.N209T 0.31 deleterious(0) probably_damaging(1) TCGA-G3-A3CK-01 17 48174927 48174927 T C PDK2 Missense_Mutation p.W87R 0.25 deleterious(0.01) possibly_damaging(0.459) TCGA-G3-A3CK-01 17 5085970 5085970 G T ZNF594 Missense_Mutation p.R528S 0.36 tolerated(1) benign(0.102) TCGA-G3-A3CK-01 17 531471 531479 TCTAGTAAA - VPS53 Splice_Site p.X230_splice 0.28 TCGA-G3-A3CK-01 17 56584192 56584192 T G MTMR4 Silent p.A301A 0.16 TCGA-G3-A3CK-01 17 63534326 63534326 G A AXIN2 Nonsense_Mutation p.R399* 0.27 TCGA-G3-A3CK-01 17 72518964 72518964 C G CD300LB Missense_Mutation p.K210N 0.27 tolerated(0.56) benign(0.155) TCGA-G3-A3CK-01 17 7721651 7721651 T C DNAH2 Missense_Mutation p.I3470T 0.30 benign(0.35) TCGA-G3-A3CK-01 17 79639185 79639185 G A CCDC137 Silent p.Q220Q 0.55 TCGA-G3-A3CK-01 17 80037282 80037282 G A FASN Missense_Mutation p.T2450M 0.27 tolerated(0.13) benign(0.104) TCGA-G3-A3CK-01 17 80039907 80039907 T G FASN Missense_Mutation p.K2047N 0.22 deleterious(0.04) benign(0.143) TCGA-G3-A3CK-01 18 21418835 21418835 A G LAMA3 Missense_Mutation p.N1062D 0.29 benign(0.005) TCGA-G3-A3CK-01 18 32826113 32826113 C T ZNF397 Nonsense_Mutation p.Q482* 0.38 TCGA-G3-A3CK-01 18 33267146 33267146 G C GALNT1 Missense_Mutation p.V286L 0.25 tolerated(0.62) benign(0.009) TCGA-G3-A3CK-01 18 683313 683313 A C ENOSF1 Missense_Mutation p.F291C 0.35 deleterious(0) possibly_damaging(0.607) TCGA-G3-A3CK-01 19 10531543 10531543 C A PDE4A Silent p.R35R 0.65 TCGA-G3-A3CK-01 19 10602811 10602812 - CGTA KEAP1 Frame_Shift_Ins p.D256Vfs*95 0.23 TCGA-G3-A3CK-01 19 10610398 10610398 G T KEAP1 Missense_Mutation p.S104R 0.35 deleterious(0) probably_damaging(1) TCGA-G3-A3CK-01 19 1275790 1275792 GCG - C19orf24 In_Frame_Del p.G82del 0.78 TCGA-G3-A3CK-01 19 14261860 14261860 G T LPHN1 Missense_Mutation p.P1417H 0.45 tolerated_low_confidence(0.07) probably_damaging(0.961) TCGA-G3-A3CK-01 19 15121855 15121855 T A CCDC105 Missense_Mutation p.F73Y 0.11 deleterious(0.02) probably_damaging(0.996) TCGA-G3-A3CK-01 19 1924232 1924242 GCCCGAGTACC - SCAMP4 Frame_Shift_Del p.P214Hfs*148 0.44 TCGA-G3-A3CK-01 19 1953388 1953388 C G CSNK1G2 Intron 0.33 TCGA-G3-A3CK-01 19 23837293 23837293 T G ZNF675 Missense_Mutation p.K148Q 0.05 deleterious(0.04) benign(0.055) TCGA-G3-A3CK-01 19 23869871 23869871 T G ZNF675 5'UTR 0.36 TCGA-G3-A3CK-01 19 36884388 36884388 T G ZFP82 Missense_Mutation p.K285T 0.51 deleterious(0.04) benign(0.011) TCGA-G3-A3CK-01 19 37734483 37734484 CC - ZNF383 Frame_Shift_Del p.P449Lfs*2 0.23 TCGA-G3-A3CK-01 19 42599725 42599725 C T POU2F2 Missense_Mutation p.R309H 0.13 deleterious(0) probably_damaging(0.995) TCGA-G3-A3CK-01 19 45860557 45860557 T C ERCC2 Missense_Mutation p.T484A 0.37 deleterious(0.01) possibly_damaging(0.507) TCGA-G3-A3CK-01 19 47214295 47214320 GCTGTAGGCGGAAAATAGGGGTGGAT - PRKD2 Splice_Site p.X127_splice 0.17 TCGA-G3-A3CK-01 19 47260727 47260727 T G FKRP 3'UTR 0.18 TCGA-G3-A3CK-01 19 49845749 49845749 C G TEAD2 Missense_Mutation p.Q396H 0.33 tolerated(1) benign(0.002) TCGA-G3-A3CK-01 19 52538392 52538392 A T ZNF432 Silent p.S180S 0.30 TCGA-G3-A3CK-01 19 56320455 56320455 A C NLRP11 Silent p.L507L 0.32 TCGA-G3-A3CK-01 19 8211044 8211044 C T FBN3 Missense_Mutation p.G106R 0.05 deleterious(0) benign(0.168) TCGA-G3-A3CK-01 19 8807893 8807893 G A ACTL9 Silent p.L387L 0.32 TCGA-G3-A3CK-01 19 9578276 9578276 T C ZNF560 Silent p.G449G 0.42 TCGA-G3-A3CK-01 1 108322079 108322079 A T VAV3 Silent p.P119P 0.35 TCGA-G3-A3CK-01 1 109795272 109795272 C T CELSR2 Silent p.G857G 0.45 TCGA-G3-A3CK-01 1 11896203 11896203 A T CLCN6 Missense_Mutation p.K658M 0.37 tolerated(0.17) benign(0.013) TCGA-G3-A3CK-01 1 144921895 144921895 A G PDE4DIP Silent p.F378F 0.13 TCGA-G3-A3CK-01 1 150437008 150437008 A G RPRD2 Missense_Mutation p.S473G 0.38 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-G3-A3CK-01 1 151280253 151280253 C A PI4KB Nonsense_Mutation p.E339* 0.47 TCGA-G3-A3CK-01 1 161141842 161141842 G T B4GALT3 Missense_Mutation p.Q316K 0.27 tolerated(0.91) benign(0.109) TCGA-G3-A3CK-01 1 161188774 161188774 T G FCER1G 3'UTR 0.53 TCGA-G3-A3CK-01 1 169847817 169847817 C A SCYL3 Silent p.G103G 0.52 TCGA-G3-A3CK-01 1 17764745 17764745 T C RCC2 Missense_Mutation p.E89G 0.18 tolerated(0.05) benign(0.055) TCGA-G3-A3CK-01 1 178269226 178269226 T C RASAL2 Missense_Mutation p.Y144H 0.50 tolerated(0.5) possibly_damaging(0.904) TCGA-G3-A3CK-01 1 186295352 186295352 C T TPR Missense_Mutation p.E1969K 0.52 benign(0) TCGA-G3-A3CK-01 1 19482082 19482082 G T UBR4 Missense_Mutation p.F2051L 0.30 possibly_damaging(0.615) TCGA-G3-A3CK-01 1 200843249 200843249 T G GPR25 Nonstop_Mutation p.*362Eext*? 0.43 TCGA-G3-A3CK-01 1 205038645 205038645 A G CNTN2 Missense_Mutation p.S718G 0.22 tolerated(1) benign(0.001) TCGA-G3-A3CK-01 1 2103755 2103755 G T PRKCZ Missense_Mutation p.G405C 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-G3-A3CK-01 1 225611703 225611703 T C LBR Silent p.V25V 0.25 TCGA-G3-A3CK-01 1 228469861 228469861 T C OBSCN Missense_Mutation p.F3238L 0.56 probably_damaging(0.995) TCGA-G3-A3CK-01 1 229431599 229431599 G T RAB4A Missense_Mutation p.V78L 0.25 deleterious(0.03) benign(0.324) TCGA-G3-A3CK-01 1 229779359 229779359 G A URB2 Silent p.G1238G 0.49 TCGA-G3-A3CK-01 1 232941381 232941381 G A MAP10 Silent p.L204L 0.09 TCGA-G3-A3CK-01 1 232945559 232945559 A C MAP10 3'UTR 0.06 TCGA-G3-A3CK-01 1 27124244 27124259 GTTCTCCAGTCACACG - PIGV Frame_Shift_Del p.C464Yfs*4 0.25 TCGA-G3-A3CK-01 1 28861881 28861881 G C RCC1 Missense_Mutation p.R248P 0.35 deleterious(0.01) probably_damaging(0.984) TCGA-G3-A3CK-01 1 35223387 35223387 C A GJB5 Missense_Mutation p.F152L 0.29 tolerated(1) benign(0.001) TCGA-G3-A3CK-01 1 43638463 43638463 T C WDR65 Silent p.G13G 0.16 TCGA-G3-A3CK-01 1 46972704 46972704 G A DMBX1 Missense_Mutation p.G8S 0.35 deleterious(0.03) benign(0.037) TCGA-G3-A3CK-01 1 52289359 52289359 A G NRD1 Missense_Mutation p.M447T 0.40 deleterious(0) probably_damaging(0.992) TCGA-G3-A3CK-01 1 52704848 52704848 C A ZFYVE9 Missense_Mutation p.L587I 0.04 deleterious(0.01) probably_damaging(0.997) TCGA-G3-A3CK-01 1 59249078 59249078 A T JUN 5'UTR 0.30 TCGA-G3-A3CK-01 1 62676374 62676374 T C L1TD1 Missense_Mutation p.L643S 0.30 tolerated(0.08) benign(0.334) TCGA-G3-A3CK-01 1 63070352 63070352 A C ANGPTL3 Missense_Mutation p.K416T 0.31 deleterious(0) probably_damaging(0.943) TCGA-G3-A3CK-01 1 70687196 70687196 G A SRSF11 Intron 0.68 TCGA-G3-A3CK-01 1 84982006 84982006 T C SPATA1 RNA 0.24 TCGA-G3-A3CK-01 1 84982044 84982044 T C SPATA1 RNA 0.24 TCGA-G3-A3CK-01 1 89480301 89480301 G T GBP3 Silent p.A119A 0.47 TCGA-G3-A3CK-01 20 2633966 2633966 C G NOP56 Missense_Mutation p.I45M 0.16 tolerated(0.84) benign(0.173) TCGA-G3-A3CK-01 20 33875240 33875240 G A FAM83C Missense_Mutation p.R448C 0.41 tolerated_low_confidence(0.26) benign(0.004) TCGA-G3-A3CK-01 20 35125206 35125206 G C DLGAP4 Missense_Mutation p.E583Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-G3-A3CK-01 20 36848153 36848153 G A KIAA1755 Missense_Mutation p.A812V 0.26 deleterious(0.04) probably_damaging(0.998) TCGA-G3-A3CK-01 20 44978974 44978974 A T SLC35C2 3'UTR 0.35 TCGA-G3-A3CK-01 21 19168929 19168942 TCTGGACATTAGCC - C21orf91 Frame_Shift_Del p.E207Dfs*18 0.20 TCGA-G3-A3CK-01 21 34947895 34947895 T G SON Intron 0.36 TCGA-G3-A3CK-01 21 38117328 38117328 C T SIM2 Silent p.C489C 0.31 TCGA-G3-A3CK-01 21 39671772 39671772 A G KCNJ15 Missense_Mutation p.I197V 0.25 tolerated(0.24) benign(0.006) TCGA-G3-A3CK-01 21 41160116 41160116 G A IGSF5 Splice_Site p.X319_splice 0.05 TCGA-G3-A3CK-01 21 45670830 45670830 A G DNMT3L Missense_Mutation p.W258R 0.44 tolerated(0.94) probably_damaging(0.935) TCGA-G3-A3CK-01 22 24177140 24177140 T G DERL3 Intron 0.15 TCGA-G3-A3CK-01 22 24718668 24718668 A G SPECC1L Missense_Mutation p.I574V 0.32 tolerated(0.48) benign(0.003) TCGA-G3-A3CK-01 22 24718674 24718674 A C SPECC1L Missense_Mutation p.M576L 0.30 tolerated(1) benign(0) TCGA-G3-A3CK-01 22 26117279 26117279 T C ADRBK2 Missense_Mutation p.L607P 0.34 tolerated_low_confidence(0.27) benign(0.217) TCGA-G3-A3CK-01 2 100210640 100210640 G T AFF3 Missense_Mutation p.Q520K 0.31 tolerated(0.22) benign(0.341) TCGA-G3-A3CK-01 2 112989510 112989510 T G ZC3H8 Missense_Mutation p.K250Q 0.31 deleterious(0.01) possibly_damaging(0.836) TCGA-G3-A3CK-01 2 130900411 130900411 C T CCDC74B Intron 0.40 TCGA-G3-A3CK-01 2 165542496 165542496 A C COBLL1 Missense_Mutation p.L1154R 0.34 deleterious(0) possibly_damaging(0.907) TCGA-G3-A3CK-01 2 170033099 170033110 CTAGTGGAAAAG - LRP2 Splice_Site p.X3465_splice 0.20 TCGA-G3-A3CK-01 2 171713607 171713607 A G GAD1 Missense_Mutation p.E498G 0.29 deleterious(0.01) benign(0.219) TCGA-G3-A3CK-01 2 174820648 174820648 T G SP3 Missense_Mutation p.N198H 0.33 tolerated(0.14) possibly_damaging(0.641) TCGA-G3-A3CK-01 2 197643775 197643775 A G GTF3C3 Missense_Mutation p.L412P 0.30 deleterious(0) probably_damaging(0.982) TCGA-G3-A3CK-01 2 202549803 202549803 C T MPP4 Silent p.G186G 0.30 TCGA-G3-A3CK-01 2 209051745 209051745 G A C2orf80 5'UTR 0.24 TCGA-G3-A3CK-01 2 216923626 216923626 T A PECR Silent p.P166P 0.34 TCGA-G3-A3CK-01 2 220113425 220113425 T A STK16 3'UTR 0.25 TCGA-G3-A3CK-01 2 220406586 220406586 C T CHPF Missense_Mutation p.G214S 0.32 tolerated(0.4) benign(0.008) TCGA-G3-A3CK-01 2 234581246 234581246 T A UGT1A9 Silent p.R222R 0.34 TCGA-G3-A3CK-01 2 234581248 234581248 T A UGT1A9 Missense_Mutation p.F223Y 0.33 tolerated(0.26) benign(0.038) TCGA-G3-A3CK-01 2 29217596 29217596 G T FAM179A 5'UTR 0.31 TCGA-G3-A3CK-01 2 32654298 32654298 A C BIRC6 Missense_Mutation p.K986T 0.47 benign(0.115) TCGA-G3-A3CK-01 2 45812829 45812829 T G SRBD1 Missense_Mutation p.I245L 0.23 deleterious(0.01) benign(0.364) TCGA-G3-A3CK-01 2 61415195 61415195 T C AHSA2 3'UTR 0.33 TCGA-G3-A3CK-01 2 71577282 71577282 G A ZNF638 Missense_Mutation p.D400N 0.07 tolerated(0.09) possibly_damaging(0.584) TCGA-G3-A3CK-01 3 111632427 111632427 T - PHLDB2 Frame_Shift_Del p.F533Lfs*36 0.27 TCGA-G3-A3CK-01 3 111939985 111939985 T A SLC9C1 Nonsense_Mutation p.K554* 0.30 TCGA-G3-A3CK-01 3 122146558 122146558 A G KPNA1 Missense_Mutation p.L419P 0.46 deleterious(0) probably_damaging(0.999) TCGA-G3-A3CK-01 3 122186176 122186176 A T KPNA1 Missense_Mutation p.M77K 0.20 tolerated(0.91) benign(0.065) TCGA-G3-A3CK-01 3 133306986 133306986 C T CDV3 3'UTR 0.37 TCGA-G3-A3CK-01 3 153202472 153202472 T C C3orf79 Missense_Mutation p.Y43H 0.31 tolerated_low_confidence(0.27) possibly_damaging(0.607) TCGA-G3-A3CK-01 3 170723139 170723139 A G SLC2A2 Missense_Mutation p.Y300H 0.33 deleterious(0.04) probably_damaging(0.981) TCGA-G3-A3CK-01 3 183894699 183894699 A G AP2M1 Intron 0.35 TCGA-G3-A3CK-01 3 184040633 184040633 A G EIF4G1 Missense_Mutation p.E614G 0.28 deleterious(0) possibly_damaging(0.715) TCGA-G3-A3CK-01 3 187449531 187449531 C A BCL6 Missense_Mutation p.V117F 0.37 deleterious(0) probably_damaging(0.999) TCGA-G3-A3CK-01 3 32280486 32280486 C T CMTM8 Missense_Mutation p.R8C 0.41 tolerated(0.06) possibly_damaging(0.535) TCGA-G3-A3CK-01 3 32932714 32932714 A G TRIM71 Missense_Mutation p.D673G 0.38 deleterious(0.01) probably_damaging(0.946) TCGA-G3-A3CK-01 3 35763321 35763321 A C ARPP21 Missense_Mutation p.K373T 0.22 deleterious(0.04) probably_damaging(0.986) TCGA-G3-A3CK-01 3 38061825 38061825 T A PLCD1 Missense_Mutation p.D39V 0.33 deleterious(0) probably_damaging(0.949) TCGA-G3-A3CK-01 3 41266100 41266100 T C CTNNB1 Missense_Mutation p.S33P 0.30 deleterious(0.01) benign(0.423) TCGA-G3-A3CK-01 3 41266110 41266110 A C CTNNB1 Missense_Mutation p.H36P 0.29 deleterious(0.04) benign(0.397) TCGA-G3-A3CK-01 3 4776907 4776907 T C ITPR1 Missense_Mutation p.C1790R 0.38 deleterious(0.03) probably_damaging(0.996) TCGA-G3-A3CK-01 3 51426503 51426503 G A MANF Missense_Mutation p.A178T 0.41 tolerated(0.17) benign(0.084) TCGA-G3-A3CK-01 3 52823733 52823733 G C ITIH1 Silent p.T728T 0.36 TCGA-G3-A3CK-01 3 58141694 58141694 C G FLNB Nonsense_Mutation p.Y2291* 0.29 TCGA-G3-A3CK-01 4 109000723 109000723 C T LEF1 Missense_Mutation p.G257D 0.40 deleterious(0) probably_damaging(0.99) TCGA-G3-A3CK-01 4 122740571 122740571 G A CCNA2 Silent p.L320L 0.39 TCGA-G3-A3CK-01 4 177608449 177608449 G C VEGFC Missense_Mutation p.T346S 0.38 tolerated(0.25) benign(0.015) TCGA-G3-A3CK-01 4 24529578 24529578 T G DHX15 Missense_Mutation p.K786T 0.36 deleterious(0.05) benign(0.003) TCGA-G3-A3CK-01 4 39409343 39409343 A T KLB Silent p.G258G 0.34 TCGA-G3-A3CK-01 4 39460742 39460742 C A LIAS Missense_Mutation p.S2Y 0.17 deleterious_low_confidence(0) benign(0.13) TCGA-G3-A3CK-01 5 124079774 124079774 T C ZNF608 Intron 0.35 TCGA-G3-A3CK-01 5 138704424 138704429 CAAGAG - PAIP2 In_Frame_Del p.K108_S109del 0.22 TCGA-G3-A3CK-01 5 139506055 139506056 - A IGIP 5'UTR 0.20 TCGA-G3-A3CK-01 5 14508729 14508729 A C TRIO 3'UTR 0.31 TCGA-G3-A3CK-01 5 153065884 153065884 C T GRIA1 Nonsense_Mutation p.R387* 0.14 TCGA-G3-A3CK-01 5 162866370 162866370 A C CCNG1 Silent p.L36L 0.34 TCGA-G3-A3CK-01 5 164028086 164028086 G A CTC-340A15.2 RNA 0.21 TCGA-G3-A3CK-01 5 170346578 170346578 T G RANBP17 Missense_Mutation p.F412C 0.37 deleterious(0) possibly_damaging(0.491) TCGA-G3-A3CK-01 5 26881298 26881298 G T CDH9 Missense_Mutation p.R773S 0.32 deleterious(0.02) possibly_damaging(0.587) TCGA-G3-A3CK-01 5 52347345 52347345 T C ITGA2 Silent p.Y245Y 0.30 TCGA-G3-A3CK-01 5 54442574 54442574 T G CDC20B Missense_Mutation p.Q79H 0.35 tolerated(0.05) probably_damaging(0.959) TCGA-G3-A3CK-01 5 5454677 5454677 T C KIAA0947 Missense_Mutation p.L206P 0.35 deleterious(0) probably_damaging(0.985) TCGA-G3-A3CK-01 5 54619962 54619962 T A SKIV2L2 Nonsense_Mutation p.L92* 0.44 TCGA-G3-A3CK-01 5 55259985 55259985 G T IL6ST Missense_Mutation p.P216H 0.34 deleterious(0) probably_damaging(1) TCGA-G3-A3CK-01 5 57752800 57752800 T C PLK2 Silent p.K376K 0.35 TCGA-G3-A3CK-01 5 72377662 72377662 A C FCHO2 Missense_Mutation p.K678T 0.35 deleterious(0) probably_damaging(0.999) TCGA-G3-A3CK-01 5 7773106 7773106 A G ADCY2 Missense_Mutation p.Y759C 0.36 deleterious(0) benign(0.027) TCGA-G3-A3CK-01 5 80762867 80762867 T A SSBP2 Intron 0.37 TCGA-G3-A3CK-01 5 90079723 90079723 T C GPR98 Missense_Mutation p.L4501P 0.45 probably_damaging(0.979) TCGA-G3-A3CK-01 5 90079728 90079728 A C GPR98 Missense_Mutation p.S4503R 0.18 probably_damaging(0.944) TCGA-G3-A3CK-01 5 95236720 95236720 T C ELL2 Missense_Mutation p.Q269R 0.29 deleterious(0.01) possibly_damaging(0.848) TCGA-G3-A3CK-01 5 95236730 95236730 T A ELL2 Nonsense_Mutation p.K266* 0.29 TCGA-G3-A3CK-01 6 127608258 127608258 A C RNF146 Missense_Mutation p.K167T 0.25 deleterious(0) probably_damaging(1) TCGA-G3-A3CK-01 6 130536349 130536349 T C SAMD3 Missense_Mutation p.R24G 0.32 deleterious_low_confidence(0) benign(0.032) TCGA-G3-A3CK-01 6 138608320 138608320 A C KIAA1244 Missense_Mutation p.Q965H 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-G3-A3CK-01 6 15468853 15468853 A T JARID2 Missense_Mutation p.T192S 0.42 tolerated(0.55) benign(0.079) TCGA-G3-A3CK-01 6 31833747 31833747 C T SLC44A4 Missense_Mutation p.V464I 0.40 deleterious(0) probably_damaging(0.96) TCGA-G3-A3CK-01 6 32821062 32821062 A G TAP1 Missense_Mutation p.S178P 0.36 deleterious(0.02) possibly_damaging(0.794) TCGA-G3-A3CK-01 6 32821435 32821435 G A TAP1 Silent p.D53D 0.38 TCGA-G3-A3CK-01 6 33246523 33246523 A G B3GALT4 3'UTR 0.05 TCGA-G3-A3CK-01 6 34389539 34389539 T C RPS10 Missense_Mutation p.D123G 0.31 deleterious(0.04) benign(0.033) TCGA-G3-A3CK-01 6 43174240 43174240 A G CUL9 Missense_Mutation p.Y1735C 0.38 tolerated(0.1) probably_damaging(0.994) TCGA-G3-A3CK-01 6 71569016 71569016 T C B3GAT2 3'UTR 0.39 TCGA-G3-A3CK-01 6 74304685 74304685 T C SLC17A5 3'UTR 0.33 TCGA-G3-A3CK-01 6 83896734 83896734 T C PGM3 Silent p.Q178Q 0.30 TCGA-G3-A3CK-01 6 84936140 84936140 A G KIAA1009 5'UTR 0.26 TCGA-G3-A3CK-01 6 89899880 89899888 TCACAGCTT - GABRR1 Splice_Site p.X217_splice 0.25 TCGA-G3-A3CK-01 7 116544394 116544394 T A CAPZA2 Missense_Mutation p.L128Q 0.39 deleterious(0.01) probably_damaging(0.965) TCGA-G3-A3CK-01 7 127338946 127338946 A G SND1 Missense_Mutation p.I123V 0.06 tolerated(1) benign(0.024) TCGA-G3-A3CK-01 7 15725601 15725601 C T MEOX2 Missense_Mutation p.A143T 0.43 tolerated(0.29) benign(0.001) TCGA-G3-A3CK-01 7 26237265 26237265 A C HNRNPA2B1 Missense_Mutation p.W44G 0.24 deleterious(0.03) probably_damaging(1) TCGA-G3-A3CK-01 7 31793110 31793110 G T PDE1C Missense_Mutation p.A733E 0.39 tolerated_low_confidence(0.27) benign(0.335) TCGA-G3-A3CK-01 7 33645012 33645012 T A BBS9 3'UTR 0.35 TCGA-G3-A3CK-01 7 36336620 36336620 T C EEPD1 Missense_Mutation p.I445T 0.37 deleterious(0) benign(0.349) TCGA-G3-A3CK-01 7 44579886 44579886 T C NPC1L1 Missense_Mutation p.D37G 0.35 tolerated(0.82) benign(0.014) TCGA-G3-A3CK-01 7 45956856 45956856 C T IGFBP3 Missense_Mutation p.D202N 0.35 deleterious(0.01) probably_damaging(0.991) TCGA-G3-A3CK-01 7 65425954 65425954 A T GUSB Missense_Mutation p.I629N 0.30 deleterious(0) probably_damaging(0.992) TCGA-G3-A3CK-01 7 73105342 73105342 C A WBSCR22 Silent p.L153L 0.35 TCGA-G3-A3CK-01 7 76141019 76141019 C T UPK3B Missense_Mutation p.A149V 0.28 tolerated_low_confidence(0.19) benign(0.148) TCGA-G3-A3CK-01 7 77567177 77567177 T G PHTF2 Intron 0.37 TCGA-G3-A3CK-01 7 78130892 78130893 - CT MAGI2 Splice_Site p.X322_splice 0.30 TCGA-G3-A3CK-01 7 78130909 78130909 T G MAGI2 Missense_Mutation p.E317A 0.37 deleterious(0.05) probably_damaging(0.999) TCGA-G3-A3CK-01 7 87148681 87148681 A C ABCB1 Missense_Mutation p.L963W 0.09 deleterious(0) possibly_damaging(0.808) TCGA-G3-A3CK-01 7 96651649 96651649 C T DLX5 Missense_Mutation p.V130M 0.49 deleterious(0) benign(0.099) TCGA-G3-A3CK-01 8 104898096 104898096 T G RIMS2 Silent p.S423S 0.41 TCGA-G3-A3CK-01 8 12879028 12879028 C A KIAA1456 Missense_Mutation p.S280R 0.31 tolerated(0.09) benign(0.005) TCGA-G3-A3CK-01 8 21924617 21924617 A G DMTN Missense_Mutation p.S14G 0.31 deleterious(0) probably_damaging(0.978) TCGA-G3-A3CK-01 8 28013470 28013470 T C ELP3 Missense_Mutation p.M371T 0.05 tolerated(0.05) benign(0.084) TCGA-G3-A3CK-01 8 28974375 28974375 T C KIF13B Silent p.R1270R 0.31 TCGA-G3-A3CK-01 8 28974384 28974384 T C KIF13B Silent p.L1267L 0.31 TCGA-G3-A3CK-01 8 48856412 48856412 C A PRKDC Splice_Site p.X270_splice 0.29 TCGA-G3-A3CK-01 8 52323847 52323847 A G PXDNL Silent p.R675R 0.31 TCGA-G3-A3CK-01 8 67341483 67341483 G A RRS1 Silent p.L39L 0.38 TCGA-G3-A3CK-01 8 68130369 68130369 G A ARFGEF1 Missense_Mutation p.A1448V 0.33 tolerated(0.1) benign(0.02) TCGA-G3-A3CK-01 8 71581340 71581340 G A LACTB2 Nonsense_Mutation p.Q6* 0.11 TCGA-G3-A3CK-01 8 86240784 86240784 A T CA1 3'UTR 0.34 TCGA-G3-A3CK-01 8 95892461 95892461 A C INTS8 Nonstop_Mutation p.*996Sext*6 0.34 TCGA-G3-A3CK-01 9 114341085 114341086 - TT PTGR1 Nonsense_Mutation p.Y214* 0.10 TCGA-G3-A3CK-01 9 115805892 115805892 G C ZFP37 Missense_Mutation p.L336V 0.36 deleterious(0) probably_damaging(0.981) TCGA-G3-A3CK-01 9 116770657 116770657 C T ZNF618 Missense_Mutation p.A193V 0.31 tolerated_low_confidence(0.48) benign(0.209) TCGA-G3-A3CK-01 9 123922548 123922548 T C CNTRL Missense_Mutation p.V1686A 0.28 benign(0.003) TCGA-G3-A3CK-01 9 124093964 124093964 G C GSN Intron 0.14 TCGA-G3-A3CK-01 9 125004142 125004152 TGCTACAGTAA - RBM18 3'UTR 0.25 TCGA-G3-A3CK-01 9 127622525 127622525 G A RPL35 Silent p.S53S 0.32 TCGA-G3-A3CK-01 9 136029633 136029633 G A GBGT1 Silent p.I125I 0.43 TCGA-G3-A3CK-01 9 37776352 37776352 G C TRMT10B Missense_Mutation p.R265T 0.37 deleterious(0) possibly_damaging(0.493) TCGA-G3-A3CK-01 9 84300807 84300807 T C TLE1 Missense_Mutation p.K44E 0.32 deleterious(0) probably_damaging(0.999) TCGA-G3-A3CK-01 9 84531233 84531233 C G SPATA31D5P RNA 0.50 TCGA-G3-A3CK-01 X 10094158 10094158 A G WWC3 Missense_Mutation p.I640V 0.66 tolerated(0.63) benign(0.007) TCGA-G3-A3CK-01 X 118827051 118827051 T C SEPT6 Missense_Mutation p.I6M 0.67 tolerated(0.13) benign(0.049) TCGA-G3-A3CK-01 X 65242346 65242346 T C VSIG4 Intron 0.68 TCGA-G3-A3CK-01 X 92964586 92964586 A G FAM133A Silent p.K56K 0.08 TCGA-G3-A5SI-01 10 50108278 50108278 G T WDFY4 Nonsense_Mutation p.E2484* 0.46 TCGA-G3-A5SI-01 10 6540456 6540456 G A PRKCQ Silent p.A148A 0.04 TCGA-G3-A5SI-01 11 1272392 1272392 C T MUC5B Missense_Mutation p.T4761M 0.47 unknown(0) TCGA-G3-A5SI-01 11 32414248 32414248 A G WT1 Missense_Mutation p.S435P 0.42 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-G3-A5SI-01 11 65788038 65788038 A G CATSPER1 Missense_Mutation p.L663P 0.34 deleterious(0) probably_damaging(0.998) TCGA-G3-A5SI-01 12 54756722 54756722 C T GPR84 Missense_Mutation p.R305K 0.07 tolerated(0.75) benign(0.016) TCGA-G3-A5SI-01 12 80665553 80665553 T G OTOGL Missense_Mutation p.S873A 0.43 tolerated(0.55) possibly_damaging(0.894) TCGA-G3-A5SI-01 13 113623676 113623676 T G MCF2L 5'UTR 0.44 TCGA-G3-A5SI-01 13 48953741 48953742 - G RB1 Frame_Shift_Ins p.V450Sfs*13 0.46 TCGA-G3-A5SI-01 14 103986257 103986257 C T CKB Missense_Mutation p.E364K 0.38 deleterious(0) possibly_damaging(0.863) TCGA-G3-A5SI-01 14 19563570 19563570 A T POTEG Intron 0.34 TCGA-G3-A5SI-01 14 24901509 24901509 C A KHNYN Missense_Mutation p.H348N 0.05 tolerated(0.16) benign(0.322) TCGA-G3-A5SI-01 15 65680865 65680865 T A IGDCC4 Missense_Mutation p.M923L 0.38 tolerated(0.13) benign(0.267) TCGA-G3-A5SI-01 16 1263800 1263800 T C CACNA1H Missense_Mutation p.Y1600H 0.20 deleterious(0) probably_damaging(0.997) TCGA-G3-A5SI-01 16 3335687 3335687 C G ZNF263 Missense_Mutation p.S192C 0.20 tolerated(0.11) benign(0.219) TCGA-G3-A5SI-01 17 2203672 2203672 A G SMG6 Silent p.A125A 0.87 TCGA-G3-A5SI-01 17 47299493 47299493 A T ABI3 Silent p.P281P 0.04 TCGA-G3-A5SI-01 17 74277942 74277942 C T QRICH2 Intron 0.63 TCGA-G3-A5SI-01 18 32418068 32418068 A - DTNA Intron 0.21 TCGA-G3-A5SI-01 19 12845284 12845284 C T C19orf43 Missense_Mutation p.G63D 0.22 tolerated(0.05) possibly_damaging(0.478) TCGA-G3-A5SI-01 19 17330476 17330476 C G USE1 Missense_Mutation p.L212V 0.06 tolerated(0.06) benign(0.292) TCGA-G3-A5SI-01 19 19245614 19245614 C G TMEM161A Missense_Mutation p.R29P 0.47 deleterious(0) probably_damaging(1) TCGA-G3-A5SI-01 19 8321909 8321909 G A CERS4 Missense_Mutation p.R230H 0.09 tolerated(0.06) possibly_damaging(0.749) TCGA-G3-A5SI-01 1 13501 13501 G A DDX11L1 RNA 0.31 TCGA-G3-A5SI-01 1 152081138 152081138 C G TCHH Missense_Mutation p.E1519Q 0.21 unknown(0) TCGA-G3-A5SI-01 1 18809980 18809980 A G KLHDC7A 3'UTR 0.32 TCGA-G3-A5SI-01 1 32660831 32660831 G A TXLNA 3'UTR 0.54 TCGA-G3-A5SI-01 20 30365347 30365347 G T TPX2 Missense_Mutation p.R263L 0.45 tolerated(0.65) benign(0.001) TCGA-G3-A5SI-01 20 40730794 40730795 - GA PTPRT Frame_Shift_Ins p.S1229Pfs*9 0.33 TCGA-G3-A5SI-01 21 47330914 47330914 C A PCBP3 Nonsense_Mutation p.C190* 0.38 TCGA-G3-A5SI-01 2 180815590 180815590 G A CWC22 Silent p.A627A 0.52 TCGA-G3-A5SI-01 2 73519468 73519468 G A EGR4 Missense_Mutation p.P296L 0.12 deleterious(0) probably_damaging(0.999) TCGA-G3-A5SI-01 3 119425666 119425666 T C MAATS1 Silent p.F45F 0.30 TCGA-G3-A5SI-01 3 49719195 49719195 C T APEH Silent p.S493S 0.13 TCGA-G3-A5SI-01 3 49757062 49757062 T C AMIGO3 5'UTR 0.39 TCGA-G3-A5SI-01 4 184931282 184931282 G A STOX2 Missense_Mutation p.E431K 0.07 deleterious(0.04) probably_damaging(0.94) TCGA-G3-A5SI-01 4 56345032 56345032 T A CLOCK Missense_Mutation p.D69V 0.41 deleterious(0) benign(0.232) TCGA-G3-A5SI-01 4 57215517 57215517 G T AASDH Nonsense_Mutation p.Y800* 0.40 TCGA-G3-A5SI-01 4 70361558 70361580 CTGAAGTCCATTTCATAGACATC - UGT2B4 Missense_Mutation 0.28 TCGA-G3-A5SI-01 4 87622910 87622910 G T PTPN13 Missense_Mutation p.R384I 0.11 deleterious(0) probably_damaging(0.991) TCGA-G3-A5SI-01 5 150483246 150483246 C - ANXA6 Frame_Shift_Del p.G616Afs*7 0.34 TCGA-G3-A5SI-01 5 54624616 54624616 A C SKIV2L2 Silent p.S164S 0.41 TCGA-G3-A5SI-01 6 18249918 18249918 C T DEK Silent p.E242E 0.07 TCGA-G3-A5SI-01 6 21598344 21598344 C A SOX4 3'UTR 0.73 TCGA-G3-A5SI-01 7 100004329 100004329 C T ZCWPW1 Silent p.E386E 0.08 TCGA-G3-A5SI-01 7 141464093 141464093 C G TAS2R3 Missense_Mutation p.D45E 0.04 deleterious(0.02) possibly_damaging(0.71) TCGA-G3-A5SI-01 7 150646900 150646900 C A KCNH2 Intron 0.44 TCGA-G3-A5SI-01 7 42116418 42116418 G T GLI3 Missense_Mutation p.P136T 0.18 deleterious(0) probably_damaging(0.999) TCGA-G3-A5SI-01 8 105502999 105502999 G A LRP12 Missense_Mutation p.R828C 0.06 tolerated_low_confidence(0.13) benign(0.003) TCGA-G3-A5SI-01 8 133141974 133141974 C G KCNQ3 Silent p.V718V 0.30 TCGA-G3-A5SI-01 8 1998979 1998979 G A MYOM2 Silent p.A33A 0.40 TCGA-G3-A5SI-01 8 23429092 23429092 C T SLC25A37 Silent p.L247L 0.45 TCGA-G3-A5SI-01 8 23709890 23709890 C A STC1 Silent p.V42V 0.38 TCGA-G3-A5SI-01 8 87738774 87738774 T C CNGB3 Missense_Mutation p.K108R 0.28 tolerated(0.36) benign(0.025) TCGA-G3-A5SI-01 9 25678526 25678526 T A TUSC1 5'UTR 0.44 TCGA-G3-A5SI-01 9 33295194 33295194 C T NFX1 Nonsense_Mutation p.R268* 0.06 TCGA-G3-A5SI-01 9 95152228 95152228 G C OGN Missense_Mutation p.L180V 0.48 tolerated(1) benign(0.002) TCGA-G3-A5SI-01 9 96440065 96440065 C T PHF2 3'UTR 0.47 TCGA-G3-A5SI-01 Y 5605945 5605945 A T PCDH11Y Nonsense_Mutation p.R1329* 0.91 TCGA-G3-A5SJ-01 10 48370889 48370889 G T ZNF488 Missense_Mutation p.E119D 0.46 tolerated(0.2) benign(0.004) TCGA-G3-A5SJ-01 10 70955011 70955011 A T SUPV3L1 Missense_Mutation p.R307S 0.50 deleterious(0) probably_damaging(1) TCGA-G3-A5SJ-01 10 79577541 79577541 G C DLG5 Missense_Mutation p.R1260G 0.53 deleterious(0.04) probably_damaging(0.994) TCGA-G3-A5SJ-01 10 97956734 97956734 T C BLNK Missense_Mutation p.Y394C 0.46 deleterious(0) probably_damaging(1) TCGA-G3-A5SJ-01 11 118342446 118342446 C G KMT2A Nonsense_Mutation p.S191* 0.39 TCGA-G3-A5SJ-01 11 587380 587380 C A PHRF1 Silent p.L112L 0.47 TCGA-G3-A5SJ-01 12 5153808 5153808 C T KCNA5 Silent p.F165F 0.52 TCGA-G3-A5SJ-01 12 6483876 6483876 T C SCNN1A Missense_Mutation p.K84R 0.41 tolerated(0.05) benign(0.407) TCGA-G3-A5SJ-01 12 7640068 7640068 C A CD163 Missense_Mutation p.W646L 0.39 tolerated(0.12) probably_damaging(0.938) TCGA-G3-A5SJ-01 13 41905450 41905450 T C NAA16 Silent p.S284S 0.27 TCGA-G3-A5SJ-01 13 70549804 70549804 G A KLHL1 Nonsense_Mutation p.Q210* 0.09 TCGA-G3-A5SJ-01 13 88330185 88330185 G A SLITRK5 Missense_Mutation p.V848M 0.36 tolerated(0.24) benign(0.005) TCGA-G3-A5SJ-01 13 99512555 99512555 C A DOCK9 Intron 0.31 TCGA-G3-A5SJ-01 14 23902342 23902342 G A MYH7 Missense_Mutation p.P99L 0.36 deleterious(0.02) possibly_damaging(0.741) TCGA-G3-A5SJ-01 14 70634240 70634240 G A SLC8A3 Silent p.N300N 0.29 TCGA-G3-A5SJ-01 14 77744797 77744797 G C POMT2 Missense_Mutation p.P696R 0.29 tolerated(0.49) benign(0) TCGA-G3-A5SJ-01 14 92265340 92265340 T G TC2N Missense_Mutation p.R210S 0.55 tolerated(0.23) possibly_damaging(0.804) TCGA-G3-A5SJ-01 15 22332622 22332622 C A RP11-69H14.6 RNA 0.21 TCGA-G3-A5SJ-01 15 22848249 22848249 G T TUBGCP5 Missense_Mutation p.G280V 0.29 deleterious(0) probably_damaging(1) TCGA-G3-A5SJ-01 15 23931945 23931945 G T NDN Silent p.L140L 0.33 TCGA-G3-A5SJ-01 15 42476724 42476724 C - VPS39 Frame_Shift_Del p.V237Wfs*86 0.24 TCGA-G3-A5SJ-01 15 48458174 48458174 T G MYEF2 Missense_Mutation p.M161L 0.33 tolerated(0.69) benign(0.174) TCGA-G3-A5SJ-01 15 78212383 78212383 G T RP11-114H24.7 Intron 0.33 TCGA-G3-A5SJ-01 16 21049196 21049196 C A DNAH3 Missense_Mutation p.A1613S 0.37 deleterious(0.01) probably_damaging(0.973) TCGA-G3-A5SJ-01 16 87741993 87741994 GT - KLHDC4 Frame_Shift_Del p.D509Gfs*35 0.18 TCGA-G3-A5SJ-01 17 11166793 11166793 C A SHISA6 Nonsense_Mutation p.S250* 0.35 TCGA-G3-A5SJ-01 17 11573031 11573031 C G DNAH9 Silent p.P1091P 0.61 TCGA-G3-A5SJ-01 17 27049757 27049757 A G RPL23A Missense_Mutation p.I76V 0.43 tolerated(0.19) benign(0.446) TCGA-G3-A5SJ-01 17 33486394 33486394 A G UNC45B Missense_Mutation p.D270G 0.24 deleterious(0) possibly_damaging(0.765) TCGA-G3-A5SJ-01 17 39084785 39084785 C G KRT23 Silent p.L237L 0.22 TCGA-G3-A5SJ-01 17 39118509 39118509 T C KRT39 Missense_Mutation p.S301G 0.40 deleterious(0.04) benign(0.021) TCGA-G3-A5SJ-01 17 39118510 39118510 G T KRT39 Silent p.T300T 0.41 TCGA-G3-A5SJ-01 17 46669637 46669637 C G HOXB5 Missense_Mutation p.K248N 0.45 deleterious(0) probably_damaging(1) TCGA-G3-A5SJ-01 17 58571884 58571884 T C APPBP2 Missense_Mutation p.I108V 0.57 tolerated(0.71) benign(0.001) TCGA-G3-A5SJ-01 17 59469506 59469506 G C BCAS3 3'UTR 0.14 TCGA-G3-A5SJ-01 17 62230425 62230425 T A TEX2 Missense_Mutation p.E1014V 0.43 deleterious(0) probably_damaging(0.991) TCGA-G3-A5SJ-01 17 70119055 70119055 C T SOX9 Silent p.A209A 0.58 TCGA-G3-A5SJ-01 17 7578513 7578513 C A TP53 Missense_Mutation p.K139N 0.49 deleterious(0.02) possibly_damaging(0.832) TCGA-G3-A5SJ-01 17 77042704 77042704 C T C1QTNF1 Missense_Mutation p.R75C 0.23 deleterious(0) probably_damaging(0.95) TCGA-G3-A5SJ-01 17 78857615 78857615 G A RPTOR Missense_Mutation p.C562Y 0.27 deleterious(0) probably_damaging(0.949) TCGA-G3-A5SJ-01 18 43667458 43667458 T A ATP5A1 Missense_Mutation p.D267V 0.23 deleterious_low_confidence(0) possibly_damaging(0.837) TCGA-G3-A5SJ-01 18 50450198 50450198 G T DCC Missense_Mutation p.W273C 0.26 deleterious(0) probably_damaging(1) TCGA-G3-A5SJ-01 19 17298831 17298831 T C MYO9B Missense_Mutation p.Y889H 0.30 deleterious(0) probably_damaging(1) TCGA-G3-A5SJ-01 19 18368011 18368011 G T KIAA1683 Missense_Mutation p.H1361Q 0.31 tolerated(0.09) benign(0.009) TCGA-G3-A5SJ-01 19 33324221 33324221 T A SLC7A9 Silent p.V411V 0.28 TCGA-G3-A5SJ-01 19 37310028 37310028 G A ZNF790 Silent p.S406S 0.29 TCGA-G3-A5SJ-01 19 37310029 37310029 C T ZNF790 Missense_Mutation p.S406N 0.29 tolerated(0.17) benign(0.013) TCGA-G3-A5SJ-01 19 37582003 37582003 A G ZNF420 Missense_Mutation p.Y39C 0.23 deleterious(0) probably_damaging(0.926) TCGA-G3-A5SJ-01 19 52887222 52887222 G A ZNF880 Missense_Mutation p.G130E 0.06 tolerated(1) benign(0.062) TCGA-G3-A5SJ-01 19 53116230 53116230 T A ZNF83 3'UTR 0.54 TCGA-G3-A5SJ-01 1 11317091 11317091 T C MTOR Missense_Mutation p.M135V 0.68 tolerated(0.67) benign(0.016) TCGA-G3-A5SJ-01 1 113635842 113635842 A G LRIG2 Missense_Mutation p.N107S 0.22 deleterious(0.01) probably_damaging(0.927) TCGA-G3-A5SJ-01 1 145281400 145281400 G T NOTCH2NL Silent p.L110L 0.07 TCGA-G3-A5SJ-01 1 166990985 166990985 A G MAEL Missense_Mutation p.I400V 0.30 tolerated(0.63) benign(0.005) TCGA-G3-A5SJ-01 1 17948399 17948422 AAGGCAGCTACGTGGAGTCTCTGA - ARHGEF10L In_Frame_Del p.G329_K336del 0.34 TCGA-G3-A5SJ-01 1 181700363 181700363 C A CACNA1E Missense_Mutation p.H765N 0.28 tolerated(0.44) benign(0.107) TCGA-G3-A5SJ-01 1 19483269 19483269 C T UBR4 Missense_Mutation p.G1971R 0.50 probably_damaging(1) TCGA-G3-A5SJ-01 1 209849677 209849715 TTAATTATTACAATGACCACCATTTTGCATTTTGAAATA ATTATTACAATGACCACCATTTTGCATTTTGAAAT G0S2 3'UTR 0.24 TCGA-G3-A5SJ-01 1 226074277 226074277 G C LEFTY1 3'UTR 0.62 TCGA-G3-A5SJ-01 1 228538636 228538636 G A OBSCN Silent p.P7094P 0.36 TCGA-G3-A5SJ-01 1 235964399 235964399 T A LYST Splice_Site p.X1238_splice 0.35 TCGA-G3-A5SJ-01 1 240072344 240072344 G C CHRM3 Missense_Mutation p.W531C 0.33 deleterious(0) probably_damaging(0.99) TCGA-G3-A5SJ-01 1 244219447 244219447 A T ZBTB18 3'UTR 0.21 TCGA-G3-A5SJ-01 1 248367191 248367191 G T OR2M3 Silent p.V274V 0.22 TCGA-G3-A5SJ-01 1 79403627 79403627 C T ELTD1 Missense_Mutation p.V209I 0.41 tolerated(0.49) benign(0.019) TCGA-G3-A5SJ-01 1 87563541 87563544 AGAA GAC HS2ST1 Frame_Shift_Del p.E204Tfs*41 0.16 TCGA-G3-A5SJ-01 1 94577092 94577092 C T ABCA4 Silent p.P68P 0.49 TCGA-G3-A5SJ-01 1 9790548 9790550 GGT - CLSTN1 3'UTR 0.69 TCGA-G3-A5SJ-01 20 34319990 34319990 G A RBM39 Nonsense_Mutation p.R57* 0.32 TCGA-G3-A5SJ-01 20 36634716 36634716 G A TTI1 Missense_Mutation p.P796S 0.33 tolerated(0.5) benign(0.009) TCGA-G3-A5SJ-01 20 3845200 3845200 T C MAVS Missense_Mutation p.V308A 0.32 tolerated(0.39) possibly_damaging(0.894) TCGA-G3-A5SJ-01 22 42271606 42271606 G A SREBF2 Missense_Mutation p.E422K 0.14 deleterious(0.05) benign(0.036) TCGA-G3-A5SJ-01 22 51169547 51169547 G T SHANK3 Missense_Mutation p.W1684L 0.25 probably_damaging(0.998) TCGA-G3-A5SJ-01 2 109405347 109405347 C A CCDC138 Nonsense_Mutation p.S64* 0.24 TCGA-G3-A5SJ-01 2 116497381 116497381 T C DPP10 Missense_Mutation p.M259T 0.27 tolerated(1) benign(0) TCGA-G3-A5SJ-01 2 141122263 141122263 C A LRP1B Nonsense_Mutation p.G3700* 0.29 TCGA-G3-A5SJ-01 2 209190271 209190271 C T PIKFYVE Silent p.P912P 0.24 TCGA-G3-A5SJ-01 2 234438104 234438104 G T USP40 Missense_Mutation p.A520E 0.32 tolerated(0.93) benign(0.009) TCGA-G3-A5SJ-01 2 29366660 29366660 A G CLIP4 Missense_Mutation p.K245R 0.28 tolerated(0.09) probably_damaging(0.999) TCGA-G3-A5SJ-01 2 31609400 31609400 T C XDH Missense_Mutation p.K225E 0.24 tolerated(0.41) benign(0.002) TCGA-G3-A5SJ-01 2 31609402 31609402 C G XDH Missense_Mutation p.R224P 0.28 tolerated(0.21) benign(0.001) TCGA-G3-A5SJ-01 2 73160942 73160942 G A EMX1 Silent p.R244R 0.31 TCGA-G3-A5SJ-01 2 73868277 73868277 G T NAT8 Missense_Mutation p.T160N 0.40 deleterious(0) possibly_damaging(0.803) TCGA-G3-A5SJ-01 3 102175049 102175049 C T ZPLD1 Missense_Mutation p.P130S 0.40 tolerated(0.4) benign(0.287) TCGA-G3-A5SJ-01 3 134920510 134920510 T G EPHB1 Missense_Mutation p.D775E 0.34 tolerated(0.81) benign(0.023) TCGA-G3-A5SJ-01 3 142682019 142682019 A C PAQR9 Missense_Mutation p.F54V 0.27 tolerated(1) possibly_damaging(0.806) TCGA-G3-A5SJ-01 3 154042052 154042052 G A DHX36 Missense_Mutation p.R52W 0.11 deleterious(0) possibly_damaging(0.689) TCGA-G3-A5SJ-01 3 183995039 183995039 A G ECE2 Missense_Mutation p.D206G 0.28 tolerated(0.06) benign(0.002) TCGA-G3-A5SJ-01 3 41268760 41268760 A T CTNNB1 Missense_Mutation p.Y333F 0.36 deleterious(0.01) probably_damaging(0.922) TCGA-G3-A5SJ-01 4 15689295 15689295 G A FAM200B Missense_Mutation p.S232N 0.38 tolerated(0.06) benign(0.016) TCGA-G3-A5SJ-01 4 166388853 166388853 A G CPE Missense_Mutation p.K173R 0.27 tolerated(0.35) benign(0.433) TCGA-G3-A5SJ-01 4 30726026 30726026 G T PCDH7 Missense_Mutation p.R994S 0.36 deleterious(0) possibly_damaging(0.511) TCGA-G3-A5SJ-01 4 39902096 39902096 T C PDS5A Missense_Mutation p.M511V 0.46 tolerated(0.49) benign(0.205) TCGA-G3-A5SJ-01 4 74008379 74008384 GCCCCA CCCCC ANKRD17 Frame_Shift_Del p.H686Qfs*9 0.29 TCGA-G3-A5SJ-01 4 74270000 74270000 T G ALB 5'UTR 0.45 TCGA-G3-A5SJ-01 4 74283835 74283835 T G ALB Missense_Mutation p.L487V 0.30 tolerated(0.15) benign(0.06) TCGA-G3-A5SJ-01 4 87655497 87655497 A G PTPN13 Missense_Mutation p.K634E 0.27 deleterious(0) probably_damaging(0.999) TCGA-G3-A5SJ-01 4 90171127 90171127 A G GPRIN3 Silent p.N45N 0.36 TCGA-G3-A5SJ-01 5 172517412 172517412 T G CREBRF Missense_Mutation p.V77G 0.35 deleterious_low_confidence(0.01) benign(0.187) TCGA-G3-A5SJ-01 5 176024063 176024063 A G GPRIN1 Missense_Mutation p.Y925H 0.47 deleterious(0) probably_damaging(0.997) TCGA-G3-A5SJ-01 5 176562395 176562395 T G NSD1 Missense_Mutation p.F97L 0.31 tolerated_low_confidence(0.51) benign(0.003) TCGA-G3-A5SJ-01 5 75888748 75888748 A G IQGAP2 Missense_Mutation p.N302S 0.29 deleterious(0.02) benign(0.196) TCGA-G3-A5SJ-01 6 106554333 106554333 C T PRDM1 Missense_Mutation p.H621Y 0.41 deleterious(0) possibly_damaging(0.794) TCGA-G3-A5SJ-01 6 160189612 160189612 T A ACAT2 Missense_Mutation p.C148S 0.32 tolerated(0.54) benign(0.001) TCGA-G3-A5SJ-01 6 26197153 26197153 T C HIST1H3D Missense_Mutation p.N109S 0.30 deleterious_low_confidence(0.04) probably_damaging(0.977) TCGA-G3-A5SJ-01 6 31695402 31695402 C G DDAH2 Missense_Mutation p.C220S 0.26 deleterious(0.01) probably_damaging(1) TCGA-G3-A5SJ-01 6 57011983 57011983 G T ZNF451 Missense_Mutation p.C367F 0.23 deleterious(0) probably_damaging(0.998) TCGA-G3-A5SJ-01 6 83881724 83881724 T G PGM3 Missense_Mutation p.K461Q 0.25 deleterious(0.04) benign(0.271) TCGA-G3-A5SJ-01 7 127222282 127222282 T C GCC1 Missense_Mutation p.H705R 0.28 tolerated(0.89) benign(0.001) TCGA-G3-A5SJ-01 7 131910919 131910919 C T PLXNA4 Splice_Site p.X661_splice 0.42 TCGA-G3-A5SJ-01 7 141763307 141763307 T C MGAM Silent p.N1422N 0.30 TCGA-G3-A5SJ-01 7 30673470 30673470 G T GARS Missense_Mutation p.E738D 0.47 tolerated_low_confidence(0.09) benign(0.116) TCGA-G3-A5SJ-01 7 31682701 31682701 G A CCDC129 Missense_Mutation p.V599I 0.36 tolerated(1) benign(0.003) TCGA-G3-A5SJ-01 7 36895340 36895340 T C ELMO1 Missense_Mutation p.D667G 0.30 deleterious(0) probably_damaging(0.999) TCGA-G3-A5SJ-01 7 43917614 43917614 A C URGCP Missense_Mutation p.I483S 0.44 deleterious(0) benign(0.093) TCGA-G3-A5SJ-01 7 56140741 56140741 G C SUMF2 Missense_Mutation p.W111C 0.23 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-G3-A5SJ-01 7 6183809 6183809 C T USP42 Silent p.T324T 0.19 TCGA-G3-A5SJ-01 7 91694746 91694746 A G AKAP9 Missense_Mutation p.K2060R 0.45 probably_damaging(0.999) TCGA-G3-A5SJ-01 8 124408568 124408568 C T ATAD2 Silent p.L10L 0.06 TCGA-G3-A5SJ-01 8 133023167 133023167 T A EFR3A 3'UTR 0.22 TCGA-G3-A5SJ-01 8 134270653 134270653 C T NDRG1 Missense_Mutation p.G136S 0.30 deleterious(0) probably_damaging(1) TCGA-G3-A5SJ-01 8 140630373 140630373 G A KCNK9 3'UTR 0.46 TCGA-G3-A5SJ-01 8 141874456 141874456 G C PTK2 Missense_Mutation p.N135K 0.36 tolerated(0.19) benign(0.031) TCGA-G3-A5SJ-01 9 124535286 124535286 T G DAB2IP Missense_Mutation p.S799A 0.33 deleterious(0) possibly_damaging(0.578) TCGA-G3-A5SJ-01 9 131246268 131246268 G A ODF2 Missense_Mutation p.G347R 0.15 deleterious(0) possibly_damaging(0.642) TCGA-G3-A5SJ-01 9 140678739 140678739 C G EHMT1 Intron 0.27 TCGA-G3-A5SJ-01 9 19516230 19516230 A T SLC24A2 Missense_Mutation p.M636K 0.26 deleterious(0) probably_damaging(0.994) TCGA-G3-A5SJ-01 9 8504350 8504350 T C PTPRD Missense_Mutation p.N578S 0.31 deleterious(0.04) probably_damaging(0.996) TCGA-G3-A5SJ-01 9 95375505 95375505 G A IPPK 3'UTR 0.44 TCGA-G3-A5SJ-01 X 111700451 111700454 AATA - ZCCHC16 3'UTR 0.40 TCGA-G3-A5SJ-01 X 113961302 113961302 G A HTR2C 5'UTR 0.44 TCGA-G3-A5SJ-01 X 133527959 133527959 A G PHF6 Missense_Mutation p.K132R 0.53 tolerated(0.73) benign(0.015) TCGA-G3-A5SJ-01 X 16761852 16761852 C A SYAP1 Missense_Mutation p.P155Q 0.60 deleterious(0) probably_damaging(1) TCGA-G3-A5SJ-01 X 18238872 18238872 G A BEND2 5'UTR 0.68 TCGA-G3-A5SJ-01 X 48834814 48834814 G A GRIPAP1 Missense_Mutation p.S655L 0.95 possibly_damaging(0.502) TCGA-G3-A5SJ-01 X 56592773 56592773 A C UBQLN2 3'UTR 0.50 TCGA-G3-A5SJ-01 X 56592774 56592774 T G UBQLN2 3'UTR 0.52 TCGA-G3-A5SJ-01 X 84526390 84526390 T C ZNF711 Silent p.T614T 0.57 TCGA-G3-A5SK-01 10 135340926 135340949 CCTGCTGGTGTGGGCGGCCTTCCT - CYP2E1 In_Frame_Del p.W13_V20del 0.26 TCGA-G3-A5SK-01 10 72503886 72503886 G T ADAMTS14 Missense_Mutation p.G711V 0.06 deleterious(0) probably_damaging(1) TCGA-G3-A5SK-01 10 85991740 85991740 C T LRIT1 Silent p.V605V 0.06 TCGA-G3-A5SK-01 11 102221361 102221362 - TAG BIRC2 In_Frame_Ins p.S260dup 0.34 TCGA-G3-A5SK-01 11 108383488 108383488 G T EXPH5 Missense_Mutation p.P916T 0.31 tolerated(0.05) benign(0.306) TCGA-G3-A5SK-01 11 128839106 128839106 T C ARHGAP32 Missense_Mutation p.H1987R 0.09 deleterious_low_confidence(0.02) benign(0.012) TCGA-G3-A5SK-01 11 30921967 30921972 GACTTG - DCDC1 In_Frame_Del p.K1526_S1527del 0.12 TCGA-G3-A5SK-01 11 31312242 31312242 C T DCDC1 Missense_Mutation p.M304I 0.07 tolerated(0.41) benign(0.073) TCGA-G3-A5SK-01 11 56043388 56043388 A G OR5T1 Missense_Mutation p.K92E 0.36 deleterious(0.01) benign(0.394) TCGA-G3-A5SK-01 11 92538485 92538485 T C FAT3 Silent p.D3021D 0.31 TCGA-G3-A5SK-01 12 5024097 5024098 - T KCNA1 3'UTR 0.25 TCGA-G3-A5SK-01 12 66611016 66611016 G T IRAK3 Splice_Site p.X218_splice 0.32 TCGA-G3-A5SK-01 12 99028193 99028193 T A IKBIP Splice_Site p.X60_splice 0.41 TCGA-G3-A5SK-01 14 100191750 100191750 G A CYP46A1 Missense_Mutation p.R400Q 0.32 deleterious(0) probably_damaging(0.997) TCGA-G3-A5SK-01 14 105722840 105722840 A C BRF1 Intron 0.27 TCGA-G3-A5SK-01 14 23567966 23567966 G A C14orf119 3'UTR 0.29 TCGA-G3-A5SK-01 14 69925257 69925257 C G SLC39A9 Missense_Mutation p.L291V 0.33 deleterious(0.05) benign(0.395) TCGA-G3-A5SK-01 14 71215655 71215655 A G MAP3K9 Missense_Mutation p.I406T 0.33 deleterious(0) probably_damaging(0.962) TCGA-G3-A5SK-01 15 102182599 102182599 A T TM2D3 3'UTR 0.35 TCGA-G3-A5SK-01 15 28421656 28421656 G C HERC2 Missense_Mutation p.L3202V 0.29 probably_damaging(0.999) TCGA-G3-A5SK-01 15 42159172 42159172 G A SPTBN5 Silent p.T2155T 0.43 TCGA-G3-A5SK-01 15 75586787 75586787 C T GOLGA6D Nonsense_Mutation p.Q685* 0.03 TCGA-G3-A5SK-01 15 82336824 82336824 A G MEX3B Silent p.S129S 0.05 TCGA-G3-A5SK-01 16 11348671 11348671 A T SOCS1 3'UTR 0.31 TCGA-G3-A5SK-01 16 27772791 27772791 G A KIAA0556 Missense_Mutation p.G1230D 0.07 deleterious(0) probably_damaging(1) TCGA-G3-A5SK-01 16 32891000 32891000 G A SLC6A10P RNA 0.69 TCGA-G3-A5SK-01 16 34712195 34712195 G A RP11-80F22.9 RNA 0.24 TCGA-G3-A5SK-01 16 57951296 57951296 G A CNGB1 Missense_Mutation p.P681L 0.27 deleterious(0) probably_damaging(0.937) TCGA-G3-A5SK-01 17 11725907 11725907 G T DNAH9 Missense_Mutation p.E3001D 0.42 benign(0.019) TCGA-G3-A5SK-01 17 16470785 16470785 T G ZNF287 Missense_Mutation p.Q87H 0.05 deleterious(0) probably_damaging(0.994) TCGA-G3-A5SK-01 17 18110272 18110272 A T ALKBH5 Missense_Mutation p.D332V 0.35 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-G3-A5SK-01 17 3481004 3481004 A C SHPK Missense_Mutation p.L534R 0.51 tolerated(0.38) benign(0) TCGA-G3-A5SK-01 17 36622415 36622415 C T ARHGAP23 Missense_Mutation p.S164F 0.36 deleterious(0) probably_damaging(0.998) TCGA-G3-A5SK-01 17 36958366 36958366 C T CWC25 Silent p.E419E 0.29 TCGA-G3-A5SK-01 17 39975544 39975544 A G FKBP10 Silent p.L270L 0.04 TCGA-G3-A5SK-01 17 55197887 55197887 T C AKAP1 3'UTR 0.38 TCGA-G3-A5SK-01 17 74076379 74076379 G C ZACN Missense_Mutation p.D140H 0.30 tolerated(0.3) benign(0.12) TCGA-G3-A5SK-01 17 76440846 76440846 C A DNAH17 Missense_Mutation p.D3776Y 0.32 benign(0.26) TCGA-G3-A5SK-01 18 58038581 58038581 C T MC4R 3'UTR 0.28 TCGA-G3-A5SK-01 18 63489356 63489356 C T CDH7 Missense_Mutation p.A222V 0.25 tolerated(0.43) benign(0.021) TCGA-G3-A5SK-01 18 74980684 74980684 G T GALR1 Silent p.A292A 0.33 TCGA-G3-A5SK-01 19 35940974 35940974 T G FFAR2 Missense_Mutation p.S120A 0.30 tolerated(0.52) benign(0.032) TCGA-G3-A5SK-01 19 42311281 42311281 C A CEACAM3 Intron 0.35 TCGA-G3-A5SK-01 19 47910667 47910667 C G MEIS3 Missense_Mutation p.E339Q 0.24 deleterious(0) probably_damaging(0.993) TCGA-G3-A5SK-01 19 54214286 54214286 C A MIR524 RNA 0.38 TCGA-G3-A5SK-01 19 58640290 58640290 T C ZNF329 Missense_Mutation p.Q194R 0.05 tolerated(0.36) benign(0) TCGA-G3-A5SK-01 1 147381088 147381088 C - GJA8 Frame_Shift_Del p.P336Rfs*21 0.14 TCGA-G3-A5SK-01 1 153517143 153517143 G T S100A4 Missense_Mutation p.P43H 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-G3-A5SK-01 1 153750269 153750269 G C SLC27A3 Missense_Mutation p.A404P 0.04 deleterious(0) probably_damaging(1) TCGA-G3-A5SK-01 1 158687039 158687039 A G OR6K3 Silent p.Y289Y 0.02 TCGA-G3-A5SK-01 1 170043732 170043732 C AA KIFAP3 5'UTR 0.21 TCGA-G3-A5SK-01 1 201058470 201058470 G A CACNA1S Silent p.I272I 0.41 TCGA-G3-A5SK-01 1 215960064 215960064 T C USH2A Silent p.S3445S 0.28 TCGA-G3-A5SK-01 1 220935024 220935024 C T MARC2 Silent p.G157G 0.50 TCGA-G3-A5SK-01 1 222805522 222805522 A G MIA3 Missense_Mutation p.H1062R 0.23 tolerated(0.54) benign(0.001) TCGA-G3-A5SK-01 1 22848029 22848029 C A ZBTB40 Missense_Mutation p.P1030H 0.31 deleterious(0) benign(0) TCGA-G3-A5SK-01 1 230468595 230468595 T C PGBD5 Missense_Mutation p.Q354R 0.07 tolerated(0.23) benign(0.015) TCGA-G3-A5SK-01 1 237823313 237823313 T C RYR2 Missense_Mutation p.I2746T 0.31 benign(0.001) TCGA-G3-A5SK-01 1 248487546 248487546 C G OR2M7 Missense_Mutation p.G109R 0.45 deleterious(0.01) probably_damaging(0.983) TCGA-G3-A5SK-01 1 3432019 3432019 C T MEGF6 Missense_Mutation p.R226H 0.33 deleterious(0.04) possibly_damaging(0.457) TCGA-G3-A5SK-01 1 39879769 39879769 G A KIAA0754 Missense_Mutation p.E1142K 0.38 possibly_damaging(0.502) TCGA-G3-A5SK-01 20 19701839 19701839 C T SLC24A3 3'UTR 0.35 TCGA-G3-A5SK-01 20 23065572 23065572 C T CD93 Missense_Mutation p.E420K 0.34 tolerated(0.17) benign(0.124) TCGA-G3-A5SK-01 20 2635207 2635207 C G NOP56 Missense_Mutation p.A119G 0.32 tolerated(0.31) benign(0.148) TCGA-G3-A5SK-01 20 31609598 31609598 T C BPIFB2 Missense_Mutation p.V443A 0.29 deleterious(0) possibly_damaging(0.876) TCGA-G3-A5SK-01 20 43752465 43752465 C T WFDC12 3'UTR 0.30 TCGA-G3-A5SK-01 20 44506970 44506970 C G ZSWIM3 Silent p.L591L 0.31 TCGA-G3-A5SK-01 20 9371192 9371192 A G PLCB4 Missense_Mutation p.Y418C 0.27 deleterious(0.03) probably_damaging(0.946) TCGA-G3-A5SK-01 21 32492672 32492672 G A TIAM1 3'UTR 0.32 TCGA-G3-A5SK-01 21 43547324 43547324 C A UMODL1 Missense_Mutation p.P1296T 0.26 deleterious(0) probably_damaging(0.999) TCGA-G3-A5SK-01 2 125547604 125547604 C A CNTNAP5 Missense_Mutation p.H959N 0.29 deleterious(0) probably_damaging(0.996) TCGA-G3-A5SK-01 2 139428566 139428566 C G NXPH2 Missense_Mutation p.D241H 0.34 deleterious(0) probably_damaging(1) TCGA-G3-A5SK-01 2 152521270 152521270 T G NEB Intron 0.35 TCGA-G3-A5SK-01 2 166847702 166847702 A G SCN1A 3'UTR 0.31 TCGA-G3-A5SK-01 2 176964643 176964643 G C HOXD12 Silent p.A38A 0.20 TCGA-G3-A5SK-01 2 179448634 179448634 C A TTN Splice_Site p.X21759_splice 0.27 TCGA-G3-A5SK-01 2 181927724 181927724 C A UBE2E3 3'UTR 0.10 TCGA-G3-A5SK-01 2 191077767 191077767 A C HIBCH Missense_Mutation p.I309S 0.29 deleterious(0) probably_damaging(0.972) TCGA-G3-A5SK-01 2 25059801 25059801 C A ADCY3 Missense_Mutation p.E549D 0.32 tolerated(0.45) benign(0.001) TCGA-G3-A5SK-01 2 62107453 62107453 A C CCT4 Missense_Mutation p.L116R 0.28 deleterious(0) probably_damaging(0.999) TCGA-G3-A5SK-01 2 63631475 63631475 T C WDPCP Silent p.S381S 0.07 TCGA-G3-A5SK-01 2 65305033 65305033 C G CEP68 Missense_Mutation p.S680C 0.28 deleterious(0.01) probably_damaging(0.944) TCGA-G3-A5SK-01 2 90108975 90108975 G T IGKV6D-41 Silent p.S80S 0.05 TCGA-G3-A5SK-01 2 90109027 90109027 C A IGKV6D-41 Missense_Mutation p.L98M 0.06 tolerated(0.15) benign(0.368) TCGA-G3-A5SK-01 2 90109038 90109038 A T IGKV6D-41 Missense_Mutation p.E101D 0.06 tolerated(0.18) possibly_damaging(0.547) TCGA-G3-A5SK-01 3 113373818 113373818 T C KIAA2018 Silent p.L2237L 0.34 TCGA-G3-A5SK-01 3 120315183 120315183 G A NDUFB4 5'UTR 0.02 TCGA-G3-A5SK-01 3 128781113 128781113 T C GP9 Silent p.D177D 0.32 TCGA-G3-A5SK-01 3 130104098 130104098 A G COL6A5 Missense_Mutation p.I584M 0.36 deleterious(0.01) benign(0.012) TCGA-G3-A5SK-01 3 132050504 132050504 A T ACPP Missense_Mutation p.Q77L 0.31 deleterious(0) probably_damaging(0.956) TCGA-G3-A5SK-01 3 142747437 142747437 A - U2SURP Frame_Shift_Del p.T521Qfs*5 0.23 TCGA-G3-A5SK-01 3 46307795 46307795 T A CCR3 3'UTR 0.06 TCGA-G3-A5SK-01 3 55108222 55108222 T G CACNA2D3 Missense_Mutation p.F1089V 0.04 tolerated(0.53) possibly_damaging(0.587) TCGA-G3-A5SK-01 4 170077556 170077556 T G SH3RF1 Missense_Mutation p.K223T 0.35 deleterious(0) probably_damaging(0.999) TCGA-G3-A5SK-01 4 175897719 175897719 G A ADAM29 Missense_Mutation p.R348H 0.07 tolerated(0.06) benign(0.157) TCGA-G3-A5SK-01 4 175898784 175898784 C G ADAM29 Missense_Mutation p.P703R 0.29 tolerated(0.51) benign(0.001) TCGA-G3-A5SK-01 4 48073678 48073678 C A TXK Missense_Mutation p.W457C 0.24 deleterious(0) probably_damaging(1) TCGA-G3-A5SK-01 4 49046853 49046853 A G CWH43 Silent p.R618R 0.20 TCGA-G3-A5SK-01 4 6864199 6864199 T A KIAA0232 Missense_Mutation p.F697Y 0.35 deleterious(0.03) probably_damaging(0.998) TCGA-G3-A5SK-01 4 74281995 74281995 T C ALB Missense_Mutation p.V405A 0.21 deleterious(0.04) benign(0.188) TCGA-G3-A5SK-01 5 101632013 101632013 A G SLCO4C1 5'UTR 0.25 TCGA-G3-A5SK-01 5 143853624 143853624 C T KCTD16 Missense_Mutation p.P412S 0.28 deleterious(0) probably_damaging(0.996) TCGA-G3-A5SK-01 5 176721088 176721088 C A NSD1 Nonsense_Mutation p.S2240* 0.37 TCGA-G3-A5SK-01 5 33938060 33938060 G A RXFP3 Nonsense_Mutation p.W405* 0.40 TCGA-G3-A5SK-01 5 50685666 50685666 C A ISL1 Missense_Mutation p.P222H 0.33 deleterious(0) probably_damaging(0.972) TCGA-G3-A5SK-01 5 7892874 7892874 G C MTRR Missense_Mutation p.V496L 0.06 deleterious(0.04) benign(0.301) TCGA-G3-A5SK-01 6 131179313 131179313 T C EPB41L2 Missense_Mutation p.H994R 0.36 deleterious(0) probably_damaging(0.969) TCGA-G3-A5SK-01 6 160103382 160103382 G A SOD2 3'UTR 0.67 TCGA-G3-A5SK-01 6 161139737 161139737 A G PLG Silent p.E321E 0.10 TCGA-G3-A5SK-01 6 21597233 21597233 G T SOX4 3'UTR 0.35 TCGA-G3-A5SK-01 6 30138285 30138285 A C TRIM15 Missense_Mutation p.M247L 0.26 tolerated(0.15) benign(0) TCGA-G3-A5SK-01 6 82459698 82459698 T C FAM46A Missense_Mutation p.E348G 0.28 tolerated(0.06) possibly_damaging(0.826) TCGA-G3-A5SK-01 7 107342429 107342429 C T SLC26A4 Missense_Mutation p.P654L 0.32 tolerated(0.06) benign(0.297) TCGA-G3-A5SK-01 7 121653216 121653216 G C PTPRZ1 Silent p.G1372G 0.27 TCGA-G3-A5SK-01 7 151093228 151093228 C G WDR86 Silent p.R120R 0.28 TCGA-G3-A5SK-01 7 1887376 1887376 C A AC110781.3 Silent p.P207P 0.32 TCGA-G3-A5SK-01 7 33397473 33397473 C T BBS9 Missense_Mutation p.P520L 0.38 deleterious(0) possibly_damaging(0.699) TCGA-G3-A5SK-01 7 3658865 3658865 A T SDK1 Missense_Mutation p.E151V 0.30 tolerated(0.06) benign(0.292) TCGA-G3-A5SK-01 7 44797559 44797559 C G ZMIZ2 Missense_Mutation p.S222C 0.33 deleterious(0.01) possibly_damaging(0.572) TCGA-G3-A5SK-01 7 96639507 96639507 T A DLX6 3'UTR 0.28 TCGA-G3-A5SK-01 8 145668658 145668658 G T TONSL Missense_Mutation p.T104K 0.31 deleterious(0.04) possibly_damaging(0.7) TCGA-G3-A5SK-01 8 95677274 95677274 C - ESRP1 Frame_Shift_Del p.R293Gfs*24 0.21 TCGA-G3-A5SK-01 8 97621749 97621749 G A SDC2 Silent p.K193K 0.28 TCGA-G3-A5SK-01 9 100000854 100000854 G T CCDC180 Intron 0.26 TCGA-G3-A5SK-01 9 131810739 131810739 G C FAM73B Missense_Mutation p.S114T 0.03 tolerated(0.24) benign(0.015) TCGA-G3-A5SK-01 9 132397844 132397844 G C NTMT1 3'UTR 0.27 TCGA-G3-A5SK-01 9 21216801 21216801 T A IFNA16 Missense_Mutation p.R168S 0.04 deleterious(0.01) possibly_damaging(0.858) TCGA-G3-A5SK-01 9 22447695 22447695 G T DMRTA1 Nonsense_Mutation p.E211* 0.30 TCGA-G3-A5SK-01 9 35563264 35563264 G A FAM166B Missense_Mutation p.P62L 0.28 tolerated(0.1) probably_damaging(0.995) TCGA-G3-A5SK-01 9 71840272 71840272 G T TJP2 Silent p.T366T 0.38 TCGA-G3-A5SK-01 9 96080257 96080257 G T WNK2 Missense_Mutation p.R2281L 0.40 unknown(0) TCGA-G3-A5SK-01 X 144905414 144905414 T A SLITRK2 Missense_Mutation p.F491I 0.31 deleterious(0) probably_damaging(0.999) TCGA-G3-A5SK-01 X 151818957 151818957 T C GABRQ Missense_Mutation p.V272A 0.38 deleterious(0.04) possibly_damaging(0.814) TCGA-G3-A5SK-01 X 36103589 36103589 T C CHDC2 Missense_Mutation p.V192A 0.77 tolerated(0.19) benign(0.009) TCGA-G3-A5SK-01 X 53228047 53228047 A T KDM5C Missense_Mutation p.L756H 0.62 deleterious(0) probably_damaging(0.971) TCGA-G3-A5SK-01 X 69672476 69672476 A G DLG3 Intron 0.20 TCGA-G3-A5SK-01 X 73438407 73438407 T G MIR374B RNA 0.85 TCGA-G3-A5SK-01 X 73962088 73962088 T A KIAA2022 Silent p.S768S 0.73 TCGA-G3-A5SK-01 X 79984393 79984393 G A BRWD3 Missense_Mutation p.P415L 0.06 tolerated(0.12) benign(0.001) TCGA-G3-A5SK-01 X 90690560 90690560 T C PABPC5 5'UTR 0.31 TCGA-G3-A5SK-01 Y 4968203 4968203 A T PCDH11Y Missense_Mutation p.I862F 0.64 deleterious(0) possibly_damaging(0.662) TCGA-G3-A5SL-01 10 13708157 13708157 T G FRMD4A Missense_Mutation p.N515H 0.43 deleterious(0.02) benign(0.028) TCGA-G3-A5SL-01 10 15559170 15559170 G C ITGA8 Missense_Mutation p.T1060S 0.16 tolerated(0.35) benign(0.015) TCGA-G3-A5SL-01 10 30747090 30747090 C A MAP3K8 Silent p.L317L 0.36 TCGA-G3-A5SL-01 10 31809696 31809696 G A ZEB1 Missense_Mutation p.S479N 0.54 tolerated(0.09) probably_damaging(0.995) TCGA-G3-A5SL-01 10 54031194 54031194 C T PRKG1 Missense_Mutation p.H420Y 0.33 deleterious(0) probably_damaging(0.997) TCGA-G3-A5SL-01 10 73520591 73520591 A T C10orf54 Intron 0.12 TCGA-G3-A5SL-01 11 103814257 103814257 C A PDGFD Missense_Mutation p.W232L 0.22 deleterious(0.02) benign(0.029) TCGA-G3-A5SL-01 11 110034060 110034060 A G ZC3H12C Missense_Mutation p.K404R 0.09 deleterious(0.02) probably_damaging(0.937) TCGA-G3-A5SL-01 11 117321317 117321317 C T DSCAML1 Missense_Mutation p.G1279E 0.20 deleterious(0) probably_damaging(0.993) TCGA-G3-A5SL-01 11 118100588 118100588 C T MPZL3 3'UTR 0.34 TCGA-G3-A5SL-01 11 21555918 21555918 A G NELL1 Splice_Site p.X549_splice 0.30 TCGA-G3-A5SL-01 11 230535 230535 A C SIRT3 Missense_Mutation p.S242A 0.34 tolerated(0.05) benign(0.203) TCGA-G3-A5SL-01 11 3797196 3797196 A T NUP98 Silent p.S137S 0.23 TCGA-G3-A5SL-01 11 5291042 5291042 C G HBE1 Missense_Mutation p.E27Q 0.11 tolerated(0.25) benign(0.193) TCGA-G3-A5SL-01 11 55659022 55659022 G A TRIM51 Missense_Mutation p.V425I 0.29 deleterious(0.02) possibly_damaging(0.521) TCGA-G3-A5SL-01 11 65380716 65380716 A T MAP3K11 Missense_Mutation p.L171Q 0.35 deleterious(0) probably_damaging(0.995) TCGA-G3-A5SL-01 11 68181295 68181295 T G LRP5 Missense_Mutation p.L881R 0.34 tolerated(0.87) benign(0.006) TCGA-G3-A5SL-01 11 68216342 68216342 A T LRP5 Missense_Mutation p.D1551V 0.39 deleterious(0) probably_damaging(0.964) TCGA-G3-A5SL-01 11 73588063 73588063 C A PAAF1 5'UTR 0.40 TCGA-G3-A5SL-01 12 110819712 110819712 T C ANAPC7 Missense_Mutation p.Y360C 0.38 deleterious(0) probably_damaging(0.999) TCGA-G3-A5SL-01 12 118504496 118504496 T C VSIG10 Missense_Mutation p.D524G 0.38 deleterious(0.03) possibly_damaging(0.811) TCGA-G3-A5SL-01 12 18691110 18691110 T G PIK3C2G Missense_Mutation p.F1074C 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-G3-A5SL-01 12 46245723 46245723 C T ARID2 Nonsense_Mutation p.R1273* 0.24 TCGA-G3-A5SL-01 12 4737496 4737496 G A AKAP3 Missense_Mutation p.A191V 0.40 tolerated(0.22) benign(0.01) TCGA-G3-A5SL-01 12 48391816 48391816 T C COL2A1 Missense_Mutation p.Q125R 0.38 unknown(0) TCGA-G3-A5SL-01 12 52979943 52979943 G - KRT72 Frame_Shift_Del p.S453Rfs*189 0.27 TCGA-G3-A5SL-01 13 21361634 21361634 G C XPO4 Missense_Mutation p.R1051G 0.33 tolerated(0.18) benign(0.155) TCGA-G3-A5SL-01 14 19563423 19563423 G T POTEG Missense_Mutation p.V313L 0.23 tolerated(0.15) probably_damaging(0.952) TCGA-G3-A5SL-01 14 23530298 23530298 T C ACIN1 Missense_Mutation p.S1232G 0.42 benign(0.138) TCGA-G3-A5SL-01 14 23898464 23898464 C T MYH7 Missense_Mutation p.V411I 0.37 deleterious(0.05) probably_damaging(0.939) TCGA-G3-A5SL-01 14 24709083 24709083 A C TINF2 Missense_Mutation p.C426G 0.40 tolerated_low_confidence(0.13) benign(0.006) TCGA-G3-A5SL-01 14 24839776 24839776 T C NFATC4 Missense_Mutation p.I454T 0.35 tolerated(0.09) benign(0.003) TCGA-G3-A5SL-01 14 64165361 64165361 C T SGPP1 Missense_Mutation p.G234R 0.27 deleterious(0) probably_damaging(1) TCGA-G3-A5SL-01 14 68195937 68195937 C G RDH12 Missense_Mutation p.P230A 0.40 deleterious(0) probably_damaging(0.997) TCGA-G3-A5SL-01 14 68265045 68265045 A T ZFYVE26 Missense_Mutation p.M645K 0.44 tolerated(0.3) benign(0.009) TCGA-G3-A5SL-01 15 45003714 45003714 C T B2M 5'UTR 0.27 TCGA-G3-A5SL-01 15 75182913 75182914 - G MPI Frame_Shift_Ins p.S23Ffs*13 0.21 TCGA-G3-A5SL-01 15 83698992 83698992 G T BTBD1 Nonsense_Mutation p.Y317* 0.08 TCGA-G3-A5SL-01 16 11016299 11016300 - G CIITA Frame_Shift_Ins p.Q1091Afs*61 0.31 TCGA-G3-A5SL-01 16 20810369 20810369 G A ERI2 Silent p.F251F 0.19 TCGA-G3-A5SL-01 16 50745410 50745410 T C NOD2 Missense_Mutation p.S530P 0.37 tolerated(0.07) benign(0.192) TCGA-G3-A5SL-01 16 53269131 53269132 AT - CHD9 Frame_Shift_Del p.D849Afs*6 0.15 TCGA-G3-A5SL-01 16 81097428 81097428 G A C16orf46 Missense_Mutation p.L45F 0.45 deleterious(0) probably_damaging(0.998) TCGA-G3-A5SL-01 16 84209627 84209627 A - DNAAF1 Frame_Shift_Del p.N597Tfs*50 0.29 TCGA-G3-A5SL-01 16 84229287 84229287 G A ADAD2 Missense_Mutation p.A428T 0.63 deleterious(0.03) probably_damaging(0.946) TCGA-G3-A5SL-01 17 15341035 15341035 G A TVP23C-CDRT4 3'UTR 0.12 TCGA-G3-A5SL-01 17 19445791 19445791 T G SLC47A1 Missense_Mutation p.V74G 0.13 deleterious(0) probably_damaging(1) TCGA-G3-A5SL-01 17 2227109 2227109 C G SRR Missense_Mutation p.S322C 0.13 deleterious(0.02) benign(0.013) TCGA-G3-A5SL-01 17 2310348 2310348 T A AC006435.1 Missense_Mutation p.I142F 0.42 unknown(0) TCGA-G3-A5SL-01 17 26209980 26209980 G A LYRM9 5'UTR 0.39 TCGA-G3-A5SL-01 17 30190389 30190389 C G UTP6 Missense_Mutation p.G595R 0.06 deleterious(0) probably_damaging(0.962) TCGA-G3-A5SL-01 17 42988813 42988813 C T GFAP Silent p.L306L 0.44 TCGA-G3-A5SL-01 17 48264129 48264129 A T COL1A1 Missense_Mutation p.L1229H 0.47 unknown(0) TCGA-G3-A5SL-01 17 48735797 48735797 A C ABCC3 Missense_Mutation p.N205T 0.28 deleterious(0) possibly_damaging(0.756) TCGA-G3-A5SL-01 17 61864631 61864631 G - DDX42 Splice_Site p.X74_splice 0.19 TCGA-G3-A5SL-01 17 6328940 6328940 G C AIPL1 Missense_Mutation p.T332R 0.33 tolerated(0.38) benign(0) TCGA-G3-A5SL-01 17 6546351 6546351 G C TXNDC17 3'UTR 0.17 TCGA-G3-A5SL-01 17 80040959 80040959 C T FASN Silent p.K1866K 0.51 TCGA-G3-A5SL-01 18 21441703 21441703 C A LAMA3 Missense_Mutation p.L1506I 0.42 benign(0.002) TCGA-G3-A5SL-01 19 12886218 12886218 C - HOOK2 Splice_Site p.X15_splice 0.25 TCGA-G3-A5SL-01 19 17691557 17691557 C T COLGALT1 Missense_Mutation p.P482S 0.38 tolerated(0.11) benign(0.142) TCGA-G3-A5SL-01 19 18779891 18779891 T G KLHL26 Missense_Mutation p.Y562D 0.37 deleterious(0) probably_damaging(0.977) TCGA-G3-A5SL-01 19 36363455 36363455 C T APLP1 Silent p.H307H 0.39 TCGA-G3-A5SL-01 19 49547419 49547419 A G CGB5 5'UTR 0.36 TCGA-G3-A5SL-01 19 53453569 53453569 C A ZNF816 Missense_Mutation p.G487C 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-G3-A5SL-01 19 54214331 54214331 T C MIR524 RNA 0.27 TCGA-G3-A5SL-01 19 57036179 57036179 A G ZNF471 Missense_Mutation p.H248R 0.42 deleterious(0.03) probably_damaging(0.983) TCGA-G3-A5SL-01 19 57931234 57931234 T G AC003002.6 Missense_Mutation p.L137R 0.06 tolerated(0.12) possibly_damaging(0.615) TCGA-G3-A5SL-01 1 147086412 147086412 A G BCL9 Missense_Mutation p.N186S 0.35 deleterious(0) probably_damaging(0.952) TCGA-G3-A5SL-01 1 152734207 152734207 T G KPRP 3'UTR 0.07 TCGA-G3-A5SL-01 1 157768011 157768011 G T FCRL1 Missense_Mutation p.Q352K 0.05 deleterious(0.02) possibly_damaging(0.643) TCGA-G3-A5SL-01 1 158262506 158262506 A T CD1C Missense_Mutation p.Q244L 0.10 deleterious(0) possibly_damaging(0.875) TCGA-G3-A5SL-01 1 158614175 158614175 C - SPTA1 Frame_Shift_Del p.N1403Tfs*16 0.21 TCGA-G3-A5SL-01 1 158813151 158813151 C T MNDA Silent p.P116P 0.20 TCGA-G3-A5SL-01 1 159888612 159888612 C T TAGLN2 Missense_Mutation p.G193E 0.64 deleterious(0.03) possibly_damaging(0.493) TCGA-G3-A5SL-01 1 177245347 177245347 G A BRINP2 Silent p.L263L 0.11 TCGA-G3-A5SL-01 1 17942498 17942498 C G ARHGEF10L Intron 0.04 TCGA-G3-A5SL-01 1 183515162 183515162 G T SMG7 Missense_Mutation p.G765V 0.19 tolerated_low_confidence(0.05) possibly_damaging(0.489) TCGA-G3-A5SL-01 1 186948508 186948508 A G PLA2G4A Silent p.P674P 0.47 TCGA-G3-A5SL-01 1 19634996 19634996 T C AKR7A2 Missense_Mutation p.T147A 0.34 deleterious(0.02) benign(0.198) TCGA-G3-A5SL-01 1 203134729 203134729 A G ADORA1 Missense_Mutation p.K228E 0.27 deleterious(0) probably_damaging(0.999) TCGA-G3-A5SL-01 1 209964204 209964204 G C IRF6 Nonsense_Mutation p.Y232* 0.04 TCGA-G3-A5SL-01 1 210412874 210412874 C T SERTAD4 Missense_Mutation p.T71I 0.04 deleterious(0.02) benign(0.299) TCGA-G3-A5SL-01 1 215408294 215408294 C T KCNK2 Missense_Mutation p.R363W 0.27 deleterious(0) probably_damaging(0.999) TCGA-G3-A5SL-01 1 244214662 244214662 G C ZBTB18 5'UTR 0.06 TCGA-G3-A5SL-01 1 244582115 244582115 T C ADSS Missense_Mutation p.K298E 0.10 deleterious(0) probably_damaging(0.983) TCGA-G3-A5SL-01 1 247587264 247587264 C G NLRP3 Silent p.L173L 0.03 TCGA-G3-A5SL-01 1 27240341 27240341 C T NR0B2 Missense_Mutation p.A31T 0.28 tolerated(0.46) benign(0.001) TCGA-G3-A5SL-01 1 33236026 33236026 T C KIAA1522 Missense_Mutation p.W416R 0.26 tolerated(0.07) unknown(0) TCGA-G3-A5SL-01 1 3649427 3649427 C A TP73 Missense_Mutation p.N565K 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-G3-A5SL-01 1 3750533 3750533 T A CEP104 Missense_Mutation p.S518C 0.32 deleterious(0) possibly_damaging(0.641) TCGA-G3-A5SL-01 1 53704200 53704200 G A MAGOH 5'UTR 0.39 TCGA-G3-A5SL-01 1 63063267 63063267 T A ANGPTL3 Silent p.I10I 0.32 TCGA-G3-A5SL-01 1 86964423 86964423 C T CLCA1 Missense_Mutation p.A761V 0.20 tolerated(0.06) probably_damaging(0.951) TCGA-G3-A5SL-01 20 3002002 3002002 G A PTPRA Silent p.G363G 0.36 TCGA-G3-A5SL-01 20 60831214 60831214 G C OSBPL2 5'UTR 0.37 TCGA-G3-A5SL-01 20 60831215 60831215 G T OSBPL2 5'UTR 0.37 TCGA-G3-A5SL-01 21 35169914 35169914 T C ITSN1 Splice_Site p.X728_splice 0.39 TCGA-G3-A5SL-01 21 43221871 43221871 G A PRDM15 Silent p.T1351T 0.16 TCGA-G3-A5SL-01 21 46888317 46888317 C T COL18A1 Missense_Mutation p.R270C 0.30 unknown(0) TCGA-G3-A5SL-01 22 24837383 24837383 G A ADORA2A Missense_Mutation p.E389K 0.37 deleterious_low_confidence(0.05) benign(0.129) TCGA-G3-A5SL-01 22 32810334 32810335 - A BPIFC Frame_Shift_Ins p.L494Sfs*35 0.11 TCGA-G3-A5SL-01 22 37905071 37905071 G A CARD10 Intron 0.04 TCGA-G3-A5SL-01 22 44893045 44893045 G A LDOC1L Missense_Mutation p.P131L 0.54 deleterious(0) probably_damaging(0.96) TCGA-G3-A5SL-01 22 50886721 50886721 A T SBF1 Silent p.A1768A 0.67 TCGA-G3-A5SL-01 2 11300640 11300640 G C PQLC3 Silent p.L64L 0.05 TCGA-G3-A5SL-01 2 113763592 113763592 A G IL36A Missense_Mutation p.I18V 0.40 tolerated(0.24) benign(0.004) TCGA-G3-A5SL-01 2 160287506 160287506 C G BAZ2B Missense_Mutation p.G688R 0.06 benign(0.007) TCGA-G3-A5SL-01 2 179590290 179590290 G - TTN Frame_Shift_Del p.Q6881Sfs*14 0.19 TCGA-G3-A5SL-01 2 210824368 210824368 A G UNC80 Missense_Mutation p.Q2515R 0.39 probably_damaging(0.961) TCGA-G3-A5SL-01 2 220503556 220503556 C A SLC4A3 Silent p.V1023V 0.33 TCGA-G3-A5SL-01 2 242430491 242430491 A G FARP2 Silent p.K840K 0.31 TCGA-G3-A5SL-01 2 242434998 242434998 T A STK25 3'UTR 0.40 TCGA-G3-A5SL-01 2 25606755 25606755 T C DTNB Missense_Mutation p.E610G 0.03 deleterious(0.04) benign(0.001) TCGA-G3-A5SL-01 2 38525447 38525447 G T ATL2 Missense_Mutation p.L491M 0.07 tolerated(0.08) benign(0.146) TCGA-G3-A5SL-01 2 46611722 46611722 G T EPAS1 Missense_Mutation p.V846L 0.30 deleterious(0) probably_damaging(0.999) TCGA-G3-A5SL-01 2 97428070 97428070 A G CNNM4 Missense_Mutation p.Y445C 0.40 deleterious(0) probably_damaging(0.936) TCGA-G3-A5SL-01 3 148552327 148552327 C A CPB1 Missense_Mutation p.H64N 0.46 tolerated(1) benign(0.004) TCGA-G3-A5SL-01 3 179592187 179592187 T C PEX5L Silent p.P218P 0.32 TCGA-G3-A5SL-01 3 30032668 30032668 A G RBMS3 Silent p.E425E 0.42 TCGA-G3-A5SL-01 3 41266098 41266098 A G CTNNB1 Missense_Mutation p.D32G 0.32 deleterious(0.01) possibly_damaging(0.452) TCGA-G3-A5SL-01 3 42916920 42916920 T A CYP8B1 Missense_Mutation p.H130L 0.29 deleterious(0.03) benign(0.183) TCGA-G3-A5SL-01 3 439928 439928 T C CHL1 Missense_Mutation p.I1038T 0.15 tolerated(0.09) benign(0.025) TCGA-G3-A5SL-01 3 50251707 50251707 C T SLC38A3 RNA 0.40 TCGA-G3-A5SL-01 4 110442575 110442575 G A SEC24B Splice_Site p.X768_splice 0.23 TCGA-G3-A5SL-01 4 125591958 125591958 C T ANKRD50 Missense_Mutation p.G825E 0.19 deleterious(0) probably_damaging(0.999) TCGA-G3-A5SL-01 4 141074224 141074224 C T MAML3 Silent p.R86R 0.13 TCGA-G3-A5SL-01 4 148407017 148407017 A G EDNRA Missense_Mutation p.N62D 0.43 tolerated(0.12) benign(0.298) TCGA-G3-A5SL-01 4 155505929 155505929 T C FGA Missense_Mutation p.I650V 0.44 tolerated(0.05) benign(0.206) TCGA-G3-A5SL-01 4 155533771 155533771 G C FGG 5'UTR 0.31 TCGA-G3-A5SL-01 4 156680263 156680263 G A GUCY1B3 5'UTR 0.70 TCGA-G3-A5SL-01 4 156680264 156680264 C G GUCY1B3 5'UTR 0.58 TCGA-G3-A5SL-01 4 177067183 177067183 C T WDR17 Missense_Mutation p.R547C 0.16 deleterious(0) probably_damaging(0.999) TCGA-G3-A5SL-01 4 25005084 25005084 A C LGI2 Missense_Mutation p.L543V 0.36 deleterious(0) possibly_damaging(0.81) TCGA-G3-A5SL-01 4 66280067 66280067 C T EPHA5 Missense_Mutation p.R541Q 0.38 tolerated(0.1) probably_damaging(0.986) TCGA-G3-A5SL-01 5 140572647 140572647 C T PCDHB10 Silent p.P174P 0.37 TCGA-G3-A5SL-01 5 141313823 141313823 T C KIAA0141 Silent p.L306L 0.35 TCGA-G3-A5SL-01 5 17275846 17275846 C A BASP1 Missense_Mutation p.P174H 0.47 deleterious(0) probably_damaging(0.992) TCGA-G3-A5SL-01 5 175717891 175717891 A G SIMC1 Intron 0.38 TCGA-G3-A5SL-01 5 34824058 34824058 C T RAI14 Missense_Mutation p.S707F 0.16 deleterious(0.01) possibly_damaging(0.828) TCGA-G3-A5SL-01 5 37017238 37017238 G C NIPBL Missense_Mutation p.G1632R 0.07 tolerated(0.59) benign(0.004) TCGA-G3-A5SL-01 5 85581569 85581569 C T NBPF22P RNA 0.11 TCGA-G3-A5SL-01 5 86672363 86672363 A C RASA1 Missense_Mutation p.E722A 0.09 deleterious(0) benign(0.068) TCGA-G3-A5SL-01 6 170112622 170112622 C A PHF10 Nonsense_Mutation p.E273* 0.22 TCGA-G3-A5SL-01 6 31926222 31926223 - T NELFE Frame_Shift_Ins p.M1? 0.21 TCGA-G3-A5SL-01 6 32009013 32009013 G A CYP21A2 3'UTR 0.44 TCGA-G3-A5SL-01 6 32037394 32037394 C A TNXB Missense_Mutation p.K1841N 0.08 probably_damaging(0.993) TCGA-G3-A5SL-01 6 32041646 32041646 G T RNA5SP206 3'Flank 0.22 TCGA-G3-A5SL-01 6 348175 348175 G C DUSP22 Missense_Mutation p.E112D 0.06 tolerated(0.16) benign(0.407) TCGA-G3-A5SL-01 6 51907882 51907882 C A PKHD1 Missense_Mutation p.D958Y 0.24 deleterious(0) probably_damaging(0.99) TCGA-G3-A5SL-01 7 103179563 103179563 T C RELN Missense_Mutation p.D2381G 0.45 tolerated(0.07) probably_damaging(0.999) TCGA-G3-A5SL-01 7 21784074 21784074 C T DNAH11 Missense_Mutation p.P2732S 0.17 benign(0.216) TCGA-G3-A5SL-01 7 31683405 31683405 C A CCDC129 Silent p.I833I 0.51 TCGA-G3-A5SL-01 7 33057096 33057100 ATGAT - NT5C3A Frame_Shift_Del p.Y220Sfs*13 0.18 TCGA-G3-A5SL-01 7 6631388 6631388 C T C7orf26 Nonsense_Mutation p.Q102* 0.12 TCGA-G3-A5SL-01 7 75167256 75167256 C T HIP1 3'UTR 0.50 TCGA-G3-A5SL-01 7 81372744 81372744 C A HGF Missense_Mutation p.D264Y 0.12 deleterious(0) probably_damaging(0.995) TCGA-G3-A5SL-01 7 82545309 82545309 G A PCLO Missense_Mutation p.A3998V 0.45 unknown(0) TCGA-G3-A5SL-01 8 133153487 133153487 C T KCNQ3 Missense_Mutation p.A452T 0.24 tolerated(0.25) possibly_damaging(0.543) TCGA-G3-A5SL-01 8 141468638 141468638 C T TRAPPC9 Missense_Mutation p.R9H 0.17 unknown(0) TCGA-G3-A5SL-01 8 143623422 143623422 T C BAI1 Missense_Mutation p.F1276S 0.09 deleterious(0) benign(0.307) TCGA-G3-A5SL-01 8 143996507 143996507 G T CYP11B2 Missense_Mutation p.L184M 0.10 tolerated(0.05) benign(0.279) TCGA-G3-A5SL-01 8 53853329 53853329 A T NPBWR1 Missense_Mutation p.I288F 0.15 deleterious(0.04) benign(0.305) TCGA-G3-A5SL-01 8 55534004 55534004 A G RP1 Missense_Mutation p.R160G 0.15 deleterious(0) benign(0.434) TCGA-G3-A5SL-01 8 94817076 94817076 A G TMEM67 Silent p.E803E 0.05 TCGA-G3-A5SL-01 8 95523540 95523540 T C KIAA1429 Missense_Mutation p.N1088S 0.13 tolerated(0.42) benign(0.042) TCGA-G3-A5SL-01 8 95543221 95543221 C T KIAA1429 Missense_Mutation p.D193N 0.71 deleterious(0.01) probably_damaging(0.997) TCGA-G3-A5SL-01 8 97245396 97245396 A C UQCRB Missense_Mutation p.F27V 0.10 deleterious(0.02) possibly_damaging(0.549) TCGA-G3-A5SL-01 9 120476662 120476662 G C TLR4 Missense_Mutation p.E752D 0.06 tolerated(0.3) probably_damaging(0.976) TCGA-G3-A5SL-01 9 123937425 123937425 G A CNTRL Missense_Mutation p.A2293T 0.14 benign(0) TCGA-G3-A5SL-01 9 127685398 127685398 C A GOLGA1 Missense_Mutation p.Q179H 0.43 deleterious(0) probably_damaging(0.999) TCGA-G3-A5SL-01 9 130477961 130477961 C A PTRH1 5'UTR 0.46 TCGA-G3-A5SL-01 9 131898785 131898785 A G PPP2R4 Missense_Mutation p.Y199C 0.38 deleterious(0) probably_damaging(1) TCGA-G3-A5SL-01 9 35809218 35809218 G A NPR2 Missense_Mutation p.E1018K 0.35 tolerated(0.06) benign(0.378) TCGA-G3-A5SL-01 9 97216242 97216242 G A HIATL1 Silent p.T306T 0.35 TCGA-G3-A5SL-01 X 15851092 15851092 C G AP1S2 Intron 0.18 TCGA-G3-A5SL-01 X 65480000 65480000 T C HEPH Missense_Mutation p.V1086A 0.06 tolerated(0.07) benign(0.192) TCGA-G3-A5SL-01 X 75003638 75003638 G A MAGEE2 Missense_Mutation p.R417C 0.68 tolerated(0.27) probably_damaging(0.998) TCGA-G3-A5SM-01 10 108367021 108367021 G A SORCS1 Missense_Mutation p.A1023V 0.31 tolerated(0.91) benign(0.33) TCGA-G3-A5SM-01 10 124908050 124908050 G A HMX2 Silent p.E52E 0.18 TCGA-G3-A5SM-01 10 17271663 17271663 A T VIM Missense_Mutation p.Q81L 0.33 tolerated(0.73) benign(0.124) TCGA-G3-A5SM-01 10 18282170 18282170 G A SLC39A12 Missense_Mutation p.E495K 0.26 tolerated(0.05) possibly_damaging(0.811) TCGA-G3-A5SM-01 10 26409644 26409644 A T MYO3A Missense_Mutation p.N606Y 0.33 deleterious(0) possibly_damaging(0.688) TCGA-G3-A5SM-01 10 49392901 49392901 A G FRMPD2 Missense_Mutation p.Y795H 0.14 deleterious(0.04) benign(0.131) TCGA-G3-A5SM-01 10 52575807 52575807 T C A1CF Missense_Mutation p.H375R 0.29 tolerated(0.6) benign(0.062) TCGA-G3-A5SM-01 10 63212687 63212687 C T TMEM26 Silent p.A51A 0.12 TCGA-G3-A5SM-01 10 70644911 70644911 C T STOX1 Silent p.P453P 0.14 TCGA-G3-A5SM-01 10 71007177 71007177 G A HKDC1 Missense_Mutation p.E365K 0.27 tolerated(0.34) benign(0.026) TCGA-G3-A5SM-01 10 81056533 81056533 G A ZMIZ1 Intron 0.35 TCGA-G3-A5SM-01 11 117342745 117342745 C T DSCAML1 Nonsense_Mutation p.W991* 0.07 TCGA-G3-A5SM-01 11 118924950 118924950 T C HYOU1 Splice_Site p.X227_splice 0.18 TCGA-G3-A5SM-01 11 17742518 17742518 G A MYOD1 Missense_Mutation p.A234T 0.48 tolerated(0.88) benign(0.006) TCGA-G3-A5SM-01 11 36600884 36600884 T C RAG1 3'UTR 0.14 TCGA-G3-A5SM-01 11 46817173 46817173 C T CKAP5 Missense_Mutation p.G541R 0.09 tolerated(0.06) possibly_damaging(0.779) TCGA-G3-A5SM-01 11 55135547 55135547 A T OR4A15 Missense_Mutation p.Y63F 0.13 deleterious_low_confidence(0) possibly_damaging(0.754) TCGA-G3-A5SM-01 11 55371775 55371775 C A OR4C11 Silent p.V25V 0.16 TCGA-G3-A5SM-01 11 56114194 56114194 T G OR8K1 Missense_Mutation p.I227S 0.47 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-G3-A5SM-01 11 66330589 66330589 G A CTSF 3'Flank 0.18 TCGA-G3-A5SM-01 11 74013475 74013475 T C P4HA3 Missense_Mutation p.D169G 0.18 tolerated(0.11) benign(0.15) TCGA-G3-A5SM-01 11 76507685 76507685 C A TSKU Missense_Mutation p.T342N 0.27 tolerated(0.23) benign(0.033) TCGA-G3-A5SM-01 11 76834775 76834775 G A CAPN5 Silent p.Q594Q 0.20 TCGA-G3-A5SM-01 12 100042218 100042223 CCCGAC TCAT FAM71C Frame_Shift_Del p.A89Vfs*7 0.20 TCGA-G3-A5SM-01 12 112220988 112220988 C T RP11-162P23.2 Silent p.A79A 0.33 TCGA-G3-A5SM-01 12 13068820 13068820 G A GPRC5A 3'UTR 0.05 TCGA-G3-A5SM-01 12 24048842 24048842 A C SOX5 Missense_Mutation p.L52R 0.31 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-G3-A5SM-01 12 24048849 24048849 A C SOX5 Missense_Mutation p.F50V 0.28 tolerated_low_confidence(0.51) benign(0.03) TCGA-G3-A5SM-01 12 2774038 2774038 C T CACNA1C Missense_Mutation p.P1475L 0.37 tolerated(0.06) benign(0.046) TCGA-G3-A5SM-01 12 52699526 52699526 G A KRT86 Missense_Mutation p.R327H 0.04 tolerated(0.05) probably_damaging(0.954) TCGA-G3-A5SM-01 12 53041619 53041619 A G KRT2 Silent p.T381T 0.24 TCGA-G3-A5SM-01 12 53448150 53448150 C G TENC1 Silent p.P159P 0.09 TCGA-G3-A5SM-01 12 56092544 56092544 C G ITGA7 Silent p.L320L 0.17 TCGA-G3-A5SM-01 12 56638565 56638565 C T ANKRD52 Missense_Mutation p.A865T 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-G3-A5SM-01 12 58020643 58020643 C T B4GALNT1 Missense_Mutation p.A496T 0.23 tolerated(0.41) benign(0.001) TCGA-G3-A5SM-01 12 6457245 6457245 C T SCNN1A Missense_Mutation p.A661T 0.45 tolerated(0.2) benign(0.014) TCGA-G3-A5SM-01 12 64813854 64813854 C T XPOT Missense_Mutation p.A165V 0.11 tolerated(1) benign(0.033) TCGA-G3-A5SM-01 12 68051874 68051874 G A DYRK2 Missense_Mutation p.G396E 0.21 deleterious(0) probably_damaging(0.999) TCGA-G3-A5SM-01 13 73336102 73336102 T G DIS3 Missense_Mutation p.L767F 0.27 deleterious(0) probably_damaging(1) TCGA-G3-A5SM-01 14 104641634 104641634 C T KIF26A Missense_Mutation p.R837C 0.44 deleterious(0) probably_damaging(0.996) TCGA-G3-A5SM-01 14 105420945 105420945 C T AHNAK2 Silent p.S281S 0.57 TCGA-G3-A5SM-01 14 21423958 21423958 A G RNASE2 Missense_Mutation p.I10V 0.23 tolerated(0.13) benign(0.06) TCGA-G3-A5SM-01 14 24785243 24785243 G T LTB4R Missense_Mutation p.R129L 0.15 deleterious(0) probably_damaging(1) TCGA-G3-A5SM-01 14 76147887 76147887 G T TTLL5 Splice_Site p.X61_splice 0.08 TCGA-G3-A5SM-01 14 93542960 93542960 G A ITPK1 Nonsense_Mutation p.R34* 0.33 TCGA-G3-A5SM-01 15 23261007 23261007 A C GOLGA8I Missense_Mutation p.K228Q 0.39 tolerated(0.13) possibly_damaging(0.544) TCGA-G3-A5SM-01 15 23811328 23811328 G A MKRN3 Silent p.S133S 0.44 TCGA-G3-A5SM-01 15 24925438 24925438 C G NPAP1 3'UTR 0.52 TCGA-G3-A5SM-01 15 42454640 42454641 - G VPS39 Frame_Shift_Ins p.S739Qfs*50 0.28 TCGA-G3-A5SM-01 15 73617654 73617654 G A HCN4 Silent p.S574S 0.78 TCGA-G3-A5SM-01 16 1535964 1535964 G A PTX4 Silent p.C466C 0.15 TCGA-G3-A5SM-01 16 19551992 19551992 A G CCP110 Silent p.L644L 0.40 TCGA-G3-A5SM-01 16 2257268 2257268 G T MLST8 Silent p.L165L 0.40 TCGA-G3-A5SM-01 16 314814 314814 C A ITFG3 Silent p.V484V 0.22 TCGA-G3-A5SM-01 16 4519432 4519432 C T NMRAL1 Silent p.L25L 0.45 TCGA-G3-A5SM-01 17 1630783 1630783 C T WDR81 Nonsense_Mutation p.Q844* 0.40 TCGA-G3-A5SM-01 17 2076069 2076069 C G SMG6 Missense_Mutation p.K1080N 0.43 deleterious(0.02) probably_damaging(0.978) TCGA-G3-A5SM-01 17 32964431 32964431 T C TMEM132E Missense_Mutation p.L712P 0.10 deleterious(0) probably_damaging(0.989) TCGA-G3-A5SM-01 17 39114975 39114975 C T KRT39 Missense_Mutation p.G452R 0.21 tolerated(0.39) benign(0.004) TCGA-G3-A5SM-01 17 39190602 39190602 A G KRTAP1-3 Missense_Mutation p.C158R 0.17 deleterious(0) possibly_damaging(0.588) TCGA-G3-A5SM-01 17 48148866 48148866 G A ITGA3 Missense_Mutation p.D315N 0.22 deleterious(0) probably_damaging(1) TCGA-G3-A5SM-01 17 51901739 51901739 G T KIF2B Missense_Mutation p.A449S 0.18 deleterious(0) probably_damaging(0.999) TCGA-G3-A5SM-01 17 54672860 54672860 G T NOG 3'UTR 0.13 TCGA-G3-A5SM-01 17 56700253 56700253 G T TEX14 Missense_Mutation p.N124K 0.46 tolerated(0.09) benign(0.045) TCGA-G3-A5SM-01 17 61561892 61561892 G A ACE Silent p.P637P 0.04 TCGA-G3-A5SM-01 17 6381970 6381970 G C PITPNM3 Missense_Mutation p.S225C 0.47 deleterious(0.03) possibly_damaging(0.897) TCGA-G3-A5SM-01 17 68172588 68172588 G T KCNJ2 3'UTR 0.20 TCGA-G3-A5SM-01 17 72613454 72613454 G C CD300E Missense_Mutation p.T64S 0.12 deleterious(0.01) probably_damaging(0.98) TCGA-G3-A5SM-01 17 7574035 7574035 T C TP53 Splice_Site p.X332_splice 0.43 TCGA-G3-A5SM-01 18 33267144 33267144 C T GALNT1 Missense_Mutation p.P285L 0.13 deleterious(0) probably_damaging(0.984) TCGA-G3-A5SM-01 18 34156482 34156482 T C FHOD3 Missense_Mutation p.W194R 0.14 deleterious(0) probably_damaging(0.999) TCGA-G3-A5SM-01 18 67425047 67425047 G A DOK6 Missense_Mutation p.R265H 0.41 deleterious(0) probably_damaging(0.993) TCGA-G3-A5SM-01 18 76754132 76754132 G T SALL3 Missense_Mutation p.R714L 0.20 deleterious(0) probably_damaging(1) TCGA-G3-A5SM-01 19 14640442 14640442 A T TECR 5'UTR 0.10 TCGA-G3-A5SM-01 19 15221217 15221217 C T SYDE1 Intron 0.23 TCGA-G3-A5SM-01 19 18994929 18994929 G A CERS1 Missense_Mutation p.T186I 0.11 deleterious(0) probably_damaging(0.97) TCGA-G3-A5SM-01 19 22785450 22785450 C T AC011467.1 5'Flank 0.29 TCGA-G3-A5SM-01 19 51322605 51322605 C T KLK1 Missense_Mutation p.G212S 0.07 deleterious(0) probably_damaging(0.97) TCGA-G3-A5SM-01 19 52919064 52919064 C A ZNF528 Missense_Mutation p.T320N 0.08 deleterious(0) possibly_damaging(0.738) TCGA-G3-A5SM-01 19 57175244 57175244 C T ZNF835 Silent p.T441T 0.27 TCGA-G3-A5SM-01 1 117644020 117644020 A G TTF2 Silent p.T1121T 0.33 TCGA-G3-A5SM-01 1 207644362 207644362 G A CR2 Missense_Mutation p.G475R 0.11 deleterious(0.01) possibly_damaging(0.771) TCGA-G3-A5SM-01 1 245849809 245849809 C T KIF26B Missense_Mutation p.T1175M 0.09 deleterious(0.01) unknown(0) TCGA-G3-A5SM-01 1 248756351 248756351 G A OR2T10 Missense_Mutation p.T240I 0.13 deleterious(0) probably_damaging(1) TCGA-G3-A5SM-01 1 28598805 28598805 G A SESN2 Missense_Mutation p.R122H 0.17 deleterious(0) probably_damaging(1) TCGA-G3-A5SM-01 20 47269978 47269978 C T PREX1 Missense_Mutation p.G756D 0.28 deleterious(0) probably_damaging(0.982) TCGA-G3-A5SM-01 20 60499390 60499390 A G CDH4 Splice_Site p.X543_splice 0.12 TCGA-G3-A5SM-01 20 62120486 62120486 G C EEF1A2 Missense_Mutation p.P350R 0.31 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-G3-A5SM-01 21 22910376 22910376 A G NCAM2 3'UTR 0.31 TCGA-G3-A5SM-01 21 31852613 31852613 G A KRTAP19-1 Silent p.Y8Y 0.21 TCGA-G3-A5SM-01 21 32185533 32185533 G C KRTAP8-1 Silent p.L2L 0.27 TCGA-G3-A5SM-01 21 42598204 42598204 C A BACE2 Silent p.L108L 0.06 TCGA-G3-A5SM-01 21 45107710 45107710 A T RRP1B Missense_Mutation p.E485D 0.19 tolerated(0.2) benign(0.015) TCGA-G3-A5SM-01 21 45523433 45523433 G A TRAPPC10 3'UTR 0.15 TCGA-G3-A5SM-01 22 24837235 24837235 C T ADORA2A Silent p.N339N 0.16 TCGA-G3-A5SM-01 2 108488196 108488196 A C RGPD4 Missense_Mutation p.T1246P 0.12 tolerated(0.09) possibly_damaging(0.709) TCGA-G3-A5SM-01 2 108488198 108488198 A C RGPD4 Silent p.T1246T 0.12 TCGA-G3-A5SM-01 2 159651944 159651944 T A DAPL1 Splice_Site p.X20_splice 0.13 TCGA-G3-A5SM-01 2 160664981 160664981 C T LY75-CD302 Missense_Mutation p.G1601R 0.18 deleterious(0) probably_damaging(0.991) TCGA-G3-A5SM-01 2 179560835 179560835 C T TTN Missense_Mutation p.D10322N 0.35 TCGA-G3-A5SM-01 2 233390976 233390976 T C CHRND Silent p.C17C 0.11 TCGA-G3-A5SM-01 2 234526864 234526864 G T UGT1A8 Nonsense_Mutation p.G171* 0.13 TCGA-G3-A5SM-01 2 234622090 234622090 A G UGT1A5 Silent p.T151T 0.03 TCGA-G3-A5SM-01 2 25359436 25359436 G A EFR3B Missense_Mutation p.C510Y 0.65 deleterious(0.01) probably_damaging(0.999) TCGA-G3-A5SM-01 2 72692418 72692418 C A EXOC6B Missense_Mutation p.K617N 0.42 deleterious(0) probably_damaging(0.999) TCGA-G3-A5SM-01 3 107491987 107491987 C T BBX Silent p.C473C 0.39 TCGA-G3-A5SM-01 3 111261036 111261036 A G CD96 5'UTR 0.16 TCGA-G3-A5SM-01 3 121659856 121659856 G A SLC15A2 3'UTR 0.38 TCGA-G3-A5SM-01 3 12859357 12859357 C T CAND2 Missense_Mutation p.R976W 0.11 deleterious(0) possibly_damaging(0.453) TCGA-G3-A5SM-01 3 140123517 140123517 G A CLSTN2 Silent p.E182E 0.37 TCGA-G3-A5SM-01 3 14862981 14862981 G T FGD5 Silent p.T801T 0.41 TCGA-G3-A5SM-01 3 168810745 168810745 C A MECOM Splice_Site p.X932_splice 0.15 TCGA-G3-A5SM-01 3 38357904 38357904 C A SLC22A14 Missense_Mutation p.P541H 0.20 deleterious(0) probably_damaging(0.99) TCGA-G3-A5SM-01 3 403447 403447 T C CHL1 Missense_Mutation p.F458L 0.46 tolerated(0.34) benign(0.043) TCGA-G3-A5SM-01 3 44843455 44843455 C A KIF15 Missense_Mutation p.L500M 0.20 deleterious(0.01) probably_damaging(1) TCGA-G3-A5SM-01 3 98073262 98073262 T A OR5K4 Missense_Mutation p.C189S 0.22 deleterious(0) probably_damaging(1) TCGA-G3-A5SM-01 4 122836092 122836092 G A TRPC3 Missense_Mutation p.A395V 0.17 deleterious(0.05) benign(0.323) TCGA-G3-A5SM-01 4 40103840 40103840 T G N4BP2 Missense_Mutation p.S125R 0.39 tolerated(0.2) benign(0.007) TCGA-G3-A5SM-01 4 46060284 46060284 C A GABRG1 Missense_Mutation p.W289L 0.20 deleterious(0) probably_damaging(0.997) TCGA-G3-A5SM-01 4 56458269 56458269 A C PDCL2 Splice_Site p.X2_splice 0.11 TCGA-G3-A5SM-01 4 8295868 8295868 G T HTRA3 Missense_Mutation p.A331S 0.12 deleterious(0) benign(0.405) TCGA-G3-A5SM-01 4 8295870 8295870 C T HTRA3 Silent p.A331A 0.13 TCGA-G3-A5SM-01 5 122940520 122940520 A G CSNK1G3 Missense_Mutation p.T429A 0.20 tolerated_low_confidence(0.27) benign(0.005) TCGA-G3-A5SM-01 5 1244795 1244795 C T SLC6A18 Silent p.V523V 0.21 TCGA-G3-A5SM-01 5 137501703 137501703 G A BRD8 Silent p.I364I 0.29 TCGA-G3-A5SM-01 5 140558833 140558833 A G PCDHB8 Silent p.T406T 0.19 TCGA-G3-A5SM-01 5 14374421 14374421 G A TRIO Silent p.T1100T 0.27 TCGA-G3-A5SM-01 5 180431437 180431437 C A BTNL3 Missense_Mutation p.Q277K 0.22 deleterious(0.03) benign(0.002) TCGA-G3-A5SM-01 5 41927119 41927119 A T FBXO4 Missense_Mutation p.D65V 0.13 deleterious(0) probably_damaging(0.909) TCGA-G3-A5SM-01 5 74646693 74646693 C A HMGCR Missense_Mutation p.S287Y 0.29 deleterious(0.04) benign(0.157) TCGA-G3-A5SM-01 5 94749799 94749799 G A FAM81B Missense_Mutation p.G148S 0.18 deleterious(0.05) probably_damaging(0.998) TCGA-G3-A5SM-01 6 152768757 152768757 C G SYNE1 Missense_Mutation p.E1169Q 0.20 benign(0.439) TCGA-G3-A5SM-01 6 159655441 159655441 C A FNDC1 Silent p.R1299R 0.10 TCGA-G3-A5SM-01 6 168708091 168708091 T C DACT2 3'UTR 0.33 TCGA-G3-A5SM-01 6 30627550 30627550 T A DHX16 Missense_Mutation p.Q606L 0.14 deleterious(0) unknown(0) TCGA-G3-A5SM-01 6 38670887 38670887 C T GLO1 5'UTR 0.16 TCGA-G3-A5SM-01 6 43220563 43220563 G A TTBK1 Silent p.E65E 0.20 TCGA-G3-A5SM-01 6 74229722 74229722 T C EEF1A1 Missense_Mutation p.I10V 0.46 tolerated_low_confidence(0.14) benign(0.008) TCGA-G3-A5SM-01 6 96034461 96034461 A G MANEA Missense_Mutation p.H49R 0.27 tolerated(0.68) benign(0.002) TCGA-G3-A5SM-01 7 106921825 106921827 CAG - COG5 In_Frame_Del p.A529del 0.17 TCGA-G3-A5SM-01 7 107799966 107799966 G A NRCAM Missense_Mutation p.H1207Y 0.41 deleterious(0.03) possibly_damaging(0.485) TCGA-G3-A5SM-01 7 111387428 111387428 A G DOCK4 Silent p.I1487I 0.56 TCGA-G3-A5SM-01 7 130353597 130353597 C A TSGA13 3'UTR 0.67 TCGA-G3-A5SM-01 7 150501448 150501448 A G TMEM176A Splice_Site p.X186_splice 0.19 TCGA-G3-A5SM-01 7 151860411 151860411 C T KMT2C Silent p.Q3417Q 0.38 TCGA-G3-A5SM-01 7 82791801 82791801 C A PCLO Silent p.A36A 0.55 TCGA-G3-A5SM-01 7 83689778 83689778 C T SEMA3A Intron 0.12 TCGA-G3-A5SM-01 8 10468548 10468548 C T RP1L1 Silent p.Q1020Q 0.48 TCGA-G3-A5SM-01 8 110447476 110447476 T G PKHD1L1 Missense_Mutation p.V1133G 0.05 deleterious(0) probably_damaging(0.998) TCGA-G3-A5SM-01 8 144899577 144899577 T A PUF60 Silent p.P356P 0.44 TCGA-G3-A5SM-01 8 145059302 145059302 C A PARP10 Missense_Mutation p.A290S 0.17 tolerated(0.38) benign(0.004) TCGA-G3-A5SM-01 8 16921654 16921654 G - MICU3 Frame_Shift_Del p.R148Hfs*8 0.12 TCGA-G3-A5SM-01 8 1952892 1952892 G A KBTBD11 3'UTR 0.35 TCGA-G3-A5SM-01 8 33370119 33370119 T C TTI2 Missense_Mutation p.S5G 0.44 tolerated_low_confidence(0.48) benign(0.001) TCGA-G3-A5SM-01 8 61764754 61764754 G A CHD7 Missense_Mutation p.V1948M 0.42 possibly_damaging(0.73) TCGA-G3-A5SM-01 8 67926750 67926750 A G PPP1R42 Silent p.N69N 0.15 TCGA-G3-A5SM-01 8 97847252 97847252 G C CPQ Missense_Mutation p.R162T 0.37 tolerated(0.16) benign(0.064) TCGA-G3-A5SM-01 9 107607783 107607783 T C ABCA1 Missense_Mutation p.H263R 0.26 tolerated(0.34) benign(0) TCGA-G3-A5SM-01 9 140093940 140093940 G T TPRN Missense_Mutation p.D408E 0.45 tolerated(0.16) possibly_damaging(0.817) TCGA-G3-A5SM-01 9 21335316 21335316 C T KLHL9 5'UTR 0.20 TCGA-G3-A5SM-01 9 34514529 34514529 C T DNAI1 Silent p.D569D 0.15 TCGA-G3-A5SM-01 9 4666386 4666386 C T SPATA6L Intron 0.44 TCGA-G3-A5SM-01 9 82320836 82320836 G T TLE4 Missense_Mutation p.L254F 0.31 deleterious(0) probably_damaging(0.987) TCGA-G3-A5SM-01 9 82320837 82320837 G T TLE4 Missense_Mutation p.V255L 0.29 tolerated(0.06) benign(0.321) TCGA-G3-A5SM-01 9 84608679 84608679 C A SPATA31D1 Missense_Mutation p.D1098E 0.19 tolerated(0.48) benign(0.081) TCGA-G3-A5SM-01 X 106845159 106845159 G A FRMPD3 Missense_Mutation p.R1330H 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-G3-A5SM-01 X 107977917 107977917 G A IRS4 Missense_Mutation p.A553V 0.16 deleterious_low_confidence(0) unknown(0) TCGA-G3-A5SM-01 X 114141440 114141440 C T HTR2C Missense_Mutation p.P280L 0.36 tolerated(0.1) benign(0.043) TCGA-G3-A5SM-01 X 114424158 114424158 G A RBMXL3 Missense_Mutation p.A52T 0.17 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-G3-A5SM-01 X 123195634 123195634 G A STAG2 Silent p.R516R 0.17 TCGA-G3-A5SM-01 X 151128155 151128155 T A GABRE Intron 0.14 TCGA-G3-A5SM-01 X 153035892 153035892 C A PLXNB3 Missense_Mutation p.A652E 0.41 tolerated(1) benign(0.017) TCGA-G3-A5SM-01 X 153042728 153042728 G A PLXNB3 Missense_Mutation p.E1688K 0.38 deleterious(0) probably_damaging(0.937) TCGA-G3-A5SM-01 X 155007606 155007606 A G SPRY3 3'UTR 0.15 TCGA-G3-A5SM-01 X 3248325 3248325 T G MXRA5 Missense_Mutation p.N148T 0.17 tolerated(0.2) benign(0.438) TCGA-G3-A5SM-01 X 51638377 51638377 T C MAGED1 Missense_Mutation p.Y148H 0.16 tolerated_low_confidence(0.11) unknown(0) TCGA-G3-A5SM-01 X 53246991 53246991 C A KDM5C Missense_Mutation p.G170V 0.19 deleterious(0) probably_damaging(1) TCGA-G3-A5SM-01 X 53277365 53277365 C T IQSEC2 Missense_Mutation p.R838Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-G3-A6UC-01 10 102239757 102239757 G A WNT8B Missense_Mutation p.G77R 0.45 tolerated(1) benign(0.013) TCGA-G3-A6UC-01 10 5442825 5442825 A T TUBAL3 Missense_Mutation p.L77M 0.42 deleterious_low_confidence(0) probably_damaging(1) TCGA-G3-A6UC-01 10 6245052 6245052 G T PFKFB3 5'UTR 0.52 TCGA-G3-A6UC-01 10 75276369 75276369 G C USP54 Missense_Mutation p.S1272C 0.35 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-G3-A6UC-01 11 108381599 108381599 C T EXPH5 Silent p.Q1545Q 0.48 TCGA-G3-A6UC-01 11 118245829 118245829 A G UBE4A Silent p.L452L 0.47 TCGA-G3-A6UC-01 11 126201385 126201385 G A DCPS Silent p.T154T 0.55 TCGA-G3-A6UC-01 11 47381480 47381480 T C SPI1 Missense_Mutation p.Y86C 0.38 deleterious(0.03) probably_damaging(0.922) TCGA-G3-A6UC-01 11 57513362 57513362 C T BTBD18 Missense_Mutation p.G128E 0.39 deleterious(0.03) benign(0.352) TCGA-G3-A6UC-01 11 57958110 57958110 C T OR9Q2 Missense_Mutation p.R50C 0.48 tolerated(0.22) benign(0.004) TCGA-G3-A6UC-01 11 67953257 67953257 A C SUV420H1 Missense_Mutation p.M100R 0.38 deleterious(0) probably_damaging(1) TCGA-G3-A6UC-01 11 92531036 92531036 C T FAT3 Silent p.V1619V 0.42 TCGA-G3-A6UC-01 11 94280302 94280302 G T FUT4 3'UTR 0.40 TCGA-G3-A6UC-01 12 133197658 133197658 G A P2RX2 Silent p.K282K 0.54 TCGA-G3-A6UC-01 12 41949558 41949558 T A PDZRN4 Nonsense_Mutation p.L454* 0.43 TCGA-G3-A6UC-01 12 42858275 42858275 G C PRICKLE1 Missense_Mutation p.L521V 0.45 deleterious(0.05) benign(0.04) TCGA-G3-A6UC-01 12 48578199 48578199 C A C12orf68 Silent p.R98R 0.48 TCGA-G3-A6UC-01 12 48578200 48578200 C A C12orf68 Missense_Mutation p.Q99K 0.48 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-G3-A6UC-01 12 67699851 67699851 A C CAND1 Missense_Mutation p.K801N 0.47 deleterious(0.01) possibly_damaging(0.649) TCGA-G3-A6UC-01 12 68054227 68054227 A C DYRK2 3'UTR 0.43 TCGA-G3-A6UC-01 12 72017346 72017346 A C ZFC3H1 Missense_Mutation p.V1513G 0.48 deleterious(0) possibly_damaging(0.551) TCGA-G3-A6UC-01 13 21974596 21974597 - A ZDHHC20 Frame_Shift_Ins p.F171Lfs*30 0.30 TCGA-G3-A6UC-01 13 26273415 26273415 G T ATP8A2 Silent p.A772A 0.22 TCGA-G3-A6UC-01 13 51854702 51854702 C A FAM124A Missense_Mutation p.S353R 0.28 tolerated(0.19) benign(0.022) TCGA-G3-A6UC-01 13 88330562 88330562 C A SLITRK5 3'UTR 0.46 TCGA-G3-A6UC-01 14 20876328 20876328 T G TEP1 Missense_Mutation p.M91L 0.41 tolerated_low_confidence(0.76) benign(0.001) TCGA-G3-A6UC-01 14 59951497 59951497 G A JKAMP Intron 0.52 TCGA-G3-A6UC-01 14 75230510 75230510 G T YLPM1 Silent p.P106P 0.34 TCGA-G3-A6UC-01 14 75590868 75590868 C T NEK9 Missense_Mutation p.R93H 0.10 deleterious(0) probably_damaging(0.976) TCGA-G3-A6UC-01 14 86089139 86089139 C A FLRT2 Silent p.L427L 0.41 TCGA-G3-A6UC-01 15 33359765 33359765 A G FMN1 Silent p.S107S 0.26 TCGA-G3-A6UC-01 15 33359984 33359984 A T FMN1 Silent p.S34S 0.31 TCGA-G3-A6UC-01 15 40648358 40648358 C - PHGR1 Frame_Shift_Del p.H37Tfs*71 0.31 TCGA-G3-A6UC-01 15 57731023 57731023 C T CGNL1 Missense_Mutation p.L276F 0.25 deleterious(0) probably_damaging(1) TCGA-G3-A6UC-01 15 57998890 57998890 G T POLR2M 5'UTR 0.38 TCGA-G3-A6UC-01 15 66850163 66850163 G C LCTL Silent p.P273P 0.05 TCGA-G3-A6UC-01 15 67358566 67358566 G T SMAD3 Missense_Mutation p.G25V 0.30 deleterious(0.03) benign(0.064) TCGA-G3-A6UC-01 16 11771390 11771390 T G SNN 3'UTR 0.17 TCGA-G3-A6UC-01 16 20452052 20452052 A G ACSM5 3'UTR 0.33 TCGA-G3-A6UC-01 16 51173435 51173435 T C SALL1 Missense_Mutation p.N900D 0.40 deleterious(0.01) probably_damaging(0.949) TCGA-G3-A6UC-01 17 10399270 10399270 G C MYH1 Silent p.T1722T 0.47 TCGA-G3-A6UC-01 17 10408340 10408340 C T MYH1 Missense_Mutation p.M826I 0.45 deleterious(0.04) probably_damaging(0.978) TCGA-G3-A6UC-01 17 33769276 33769276 C A SLFN13 Nonsense_Mutation p.E410* 0.45 TCGA-G3-A6UC-01 17 34894023 34894034 AAGTAAATGTAG - PIGW In_Frame_Del p.V359_E362del 0.31 TCGA-G3-A6UC-01 17 36508355 36508355 C T SOCS7 Silent p.V76V 0.32 TCGA-G3-A6UC-01 17 41478306 41478306 C A ARL4D 3'UTR 0.42 TCGA-G3-A6UC-01 17 5072174 5072174 A G USP6 Missense_Mutation p.D1114G 0.46 tolerated_low_confidence(0.1) benign(0.05) TCGA-G3-A6UC-01 18 34156492 34156492 C A FHOD3 Missense_Mutation p.T197N 0.38 deleterious(0) probably_damaging(0.981) TCGA-G3-A6UC-01 18 43223109 43223109 C T SLC14A2 Missense_Mutation p.A380V 0.43 deleterious(0) possibly_damaging(0.607) TCGA-G3-A6UC-01 18 54285333 54285333 T C TXNL1 Missense_Mutation p.K132E 0.46 deleterious(0.03) possibly_damaging(0.654) TCGA-G3-A6UC-01 19 16435649 16435649 C T KLF2 5'UTR 0.60 TCGA-G3-A6UC-01 19 31768705 31768705 C T TSHZ3 Missense_Mutation p.R665H 0.38 tolerated(0.09) benign(0.086) TCGA-G3-A6UC-01 19 43234066 43234066 G T PSG3 Silent p.P284P 0.61 TCGA-G3-A6UC-01 19 47192900 47192900 T A PRKD2 Missense_Mutation p.K622I 0.44 deleterious(0) probably_damaging(0.936) TCGA-G3-A6UC-01 19 52146550 52146550 G T SIGLEC14 3'UTR 0.47 TCGA-G3-A6UC-01 19 52146551 52146551 C T SIGLEC14 3'UTR 0.45 TCGA-G3-A6UC-01 19 54080362 54080362 G T ZNF331 Missense_Mutation p.G183V 0.51 deleterious(0.01) probably_damaging(1) TCGA-G3-A6UC-01 19 57839129 57839129 A G ZNF543 Missense_Mutation p.E100G 0.21 deleterious(0.01) benign(0.039) TCGA-G3-A6UC-01 19 58549467 58549467 G A ZSCAN1 Missense_Mutation p.G88D 0.56 tolerated(0.05) possibly_damaging(0.512) TCGA-G3-A6UC-01 1 103548452 103548452 G C COL11A1 Missense_Mutation p.C61W 0.38 probably_damaging(1) TCGA-G3-A6UC-01 1 120284487 120284487 C A PHGDH Missense_Mutation p.N392K 0.35 deleterious(0) probably_damaging(0.98) TCGA-G3-A6UC-01 1 145748546 145748546 A G PDZK1 Missense_Mutation p.K140R 0.58 deleterious(0) probably_damaging(0.997) TCGA-G3-A6UC-01 1 149858163 149858163 C A HIST2H2BE Missense_Mutation p.A10S 0.31 tolerated_low_confidence(0.1) unknown(0) TCGA-G3-A6UC-01 1 152282595 152282595 G T FLG Silent p.R1589R 0.27 TCGA-G3-A6UC-01 1 183111767 183111767 G A LAMC1 Missense_Mutation p.V1558M 0.31 tolerated(0.06) possibly_damaging(0.671) TCGA-G3-A6UC-01 1 186839647 186839647 G A PLA2G4A Missense_Mutation p.M38I 0.26 tolerated(0.15) benign(0.001) TCGA-G3-A6UC-01 1 186839648 186839648 C A PLA2G4A Missense_Mutation p.L39I 0.26 tolerated(0.07) benign(0.122) TCGA-G3-A6UC-01 1 190067609 190067609 G T BRINP3 Missense_Mutation p.L614M 0.30 deleterious(0.01) benign(0.123) TCGA-G3-A6UC-01 1 205273292 205273292 C T NUAK2 Silent p.T391T 0.28 TCGA-G3-A6UC-01 1 210404870 210404870 G T SERTAD4 5'Flank 0.32 TCGA-G3-A6UC-01 1 231096999 231096999 A C TTC13 Missense_Mutation p.S108A 0.24 tolerated_low_confidence(1) benign(0.003) TCGA-G3-A6UC-01 1 247655247 247655247 T - OR2W5 RNA 0.24 TCGA-G3-A6UC-01 1 247875237 247875237 A G OR6F1 Missense_Mutation p.V274A 0.33 deleterious(0.04) possibly_damaging(0.626) TCGA-G3-A6UC-01 1 27705783 27705783 G T CD164L2 3'UTR 0.44 TCGA-G3-A6UC-01 1 32740006 32740006 C G LCK Missense_Mutation p.P26A 0.47 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-G3-A6UC-01 1 70339222 70339222 T C LRRC7 Intron 0.46 TCGA-G3-A6UC-01 1 71418493 71418493 G C PTGER3 3'UTR 0.50 TCGA-G3-A6UC-01 1 89325566 89325566 T C GTF2B Silent p.K178K 0.39 TCGA-G3-A6UC-01 20 1551500 1551500 G C SIRPB1 Silent p.A345A 0.31 TCGA-G3-A6UC-01 20 17949107 17949107 G C SNX5 Intron 0.30 TCGA-G3-A6UC-01 20 25434032 25434032 A T NINL 3'UTR 0.24 TCGA-G3-A6UC-01 20 34057783 34057783 A G CEP250 Missense_Mutation p.K307R 0.46 possibly_damaging(0.462) TCGA-G3-A6UC-01 20 37580989 37580998 CAAAGAGCGG - FAM83D Frame_Shift_Del p.K559Nfs*47 0.25 TCGA-G3-A6UC-01 20 3893207 3893207 G A PANK2 Silent p.V446V 0.30 TCGA-G3-A6UC-01 20 39792440 39792440 T C PLCG1 Missense_Mutation p.L326P 0.47 deleterious(0) probably_damaging(1) TCGA-G3-A6UC-01 20 42338684 42338684 C T MYBL2 Silent p.Y529Y 0.22 TCGA-G3-A6UC-01 20 60892042 60892042 T C LAMA5 Missense_Mutation p.R2517G 0.50 benign(0.008) TCGA-G3-A6UC-01 20 61525548 61525548 T A DIDO1 Splice_Site p.X858_splice 0.44 TCGA-G3-A6UC-01 20 62340049 62340049 G A ZGPAT Silent p.L39L 0.37 TCGA-G3-A6UC-01 22 19124884 19124884 T C DGCR14 Silent p.E329E 0.42 TCGA-G3-A6UC-01 22 31328358 31328358 T C MORC2 Missense_Mutation p.I881M 0.56 tolerated(0.33) benign(0.011) TCGA-G3-A6UC-01 22 50688856 50688856 C A HDAC10 Silent p.P97P 0.64 TCGA-G3-A6UC-01 2 11348447 11348447 T A ROCK2 Missense_Mutation p.E777V 0.38 tolerated(0.05) benign(0.065) TCGA-G3-A6UC-01 2 130897613 130897613 C T CCDC74B Silent p.E311E 0.38 TCGA-G3-A6UC-01 2 132290493 132290493 G A CCDC74A Silent p.E311E 0.17 TCGA-G3-A6UC-01 2 135095832 135095832 G A MGAT5 Silent p.A216A 0.45 TCGA-G3-A6UC-01 2 159526271 159526271 G A PKP4 Missense_Mutation p.G923D 0.44 deleterious(0.02) probably_damaging(0.979) TCGA-G3-A6UC-01 2 160628146 160628146 T G CD302 3'UTR 0.38 TCGA-G3-A6UC-01 2 174820558 174820558 T - SP3 Frame_Shift_Del p.I228Yfs*25 0.32 TCGA-G3-A6UC-01 2 179484523 179484523 C A TTN Missense_Mutation p.K15507N 0.48 TCGA-G3-A6UC-01 2 201531449 201531449 A G AOX1 Missense_Mutation p.I1195V 0.47 deleterious(0.03) possibly_damaging(0.8) TCGA-G3-A6UC-01 2 209189632 209189632 T C PIKFYVE Intron 0.46 TCGA-G3-A6UC-01 2 215813394 215813394 C T ABCA12 Missense_Mutation p.D2344N 0.37 tolerated(0.14) possibly_damaging(0.836) TCGA-G3-A6UC-01 2 231090583 231090583 G A SP140 Silent p.G8G 0.40 TCGA-G3-A6UC-01 2 25141567 25141567 G T ADCY3 Missense_Mutation p.A97D 0.37 deleterious(0.03) possibly_damaging(0.885) TCGA-G3-A6UC-01 2 54001778 54001778 T C CHAC2 3'UTR 0.43 TCGA-G3-A6UC-01 2 61258660 61258660 A G PEX13 Missense_Mutation p.S67G 0.32 tolerated(0.42) benign(0) TCGA-G3-A6UC-01 2 89104276 89104276 A G ANKRD36BP2 RNA 0.38 TCGA-G3-A6UC-01 2 98996755 98996755 C A CNGA3 Silent p.S111S 0.43 TCGA-G3-A6UC-01 3 101058948 101058948 A T SENP7 Missense_Mutation p.F783Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-G3-A6UC-01 3 10136948 10136948 G A FANCD2 Missense_Mutation p.G1343E 0.51 deleterious(0) probably_damaging(0.999) TCGA-G3-A6UC-01 3 113667674 113667674 C T ZDHHC23 Missense_Mutation p.P9S 0.46 tolerated_low_confidence(0.13) possibly_damaging(0.857) TCGA-G3-A6UC-01 3 113785076 113785076 G A QTRTD1 Missense_Mutation p.A80T 0.45 deleterious(0.04) benign(0.126) TCGA-G3-A6UC-01 3 1189706 1189706 G A CNTN6 Nonsense_Mutation p.W5* 0.36 TCGA-G3-A6UC-01 3 130129336 130129336 G T COL6A5 Missense_Mutation p.V1544L 0.44 tolerated(0.51) benign(0.002) TCGA-G3-A6UC-01 3 140281700 140281700 T G CLSTN2 Missense_Mutation p.Y754D 0.39 deleterious(0) probably_damaging(1) TCGA-G3-A6UC-01 3 168810848 168810848 C G MECOM Missense_Mutation p.G898A 0.09 tolerated(0.33) possibly_damaging(0.511) TCGA-G3-A6UC-01 3 180359906 180359906 A T CCDC39 Silent p.L583L 0.40 TCGA-G3-A6UC-01 3 183543020 183543020 C T MAP6D1 Missense_Mutation p.A106T 0.41 tolerated(0.65) possibly_damaging(0.798) TCGA-G3-A6UC-01 3 196159225 196159226 - CCC UBXN7 In_Frame_Ins p.G15dup 0.39 TCGA-G3-A6UC-01 3 41266100 41266100 T C CTNNB1 Missense_Mutation p.S33P 0.44 deleterious(0.01) benign(0.423) TCGA-G3-A6UC-01 3 47164905 47164905 A G SETD2 Silent p.S407S 0.51 TCGA-G3-A6UC-01 3 51412013 51412013 G A DOCK3 Missense_Mutation p.G1803R 0.43 deleterious_low_confidence(0) probably_damaging(1) TCGA-G3-A6UC-01 3 52434364 52434364 T A DNAH1 Missense_Mutation p.S4234T 0.44 probably_damaging(1) TCGA-G3-A6UC-01 3 52598201 52598201 G A PBRM1 Missense_Mutation p.T1222I 0.45 deleterious(0) possibly_damaging(0.702) TCGA-G3-A6UC-01 3 56681127 56681127 G T FAM208A Missense_Mutation p.S546R 0.43 deleterious(0.05) benign(0.152) TCGA-G3-A6UC-01 3 93802963 93802963 A G NSUN3 Silent p.T45T 0.41 TCGA-G3-A6UC-01 4 148575293 148575293 T A PRMT10 Missense_Mutation p.L585F 0.47 deleterious(0.04) probably_damaging(0.994) TCGA-G3-A6UC-01 4 3241784 3241784 T A HTT Nonstop_Mutation p.*3143Rext*8 0.53 TCGA-G3-A6UC-01 4 37432206 37432207 - A KIAA1239 Frame_Shift_Ins p.Y126Ifs*11 0.32 TCGA-G3-A6UC-01 4 74486007 74486007 G T RASSF6 Intron 0.50 TCGA-G3-A6UC-01 4 79373018 79373018 G C FRAS1 Missense_Mutation p.D2186H 0.38 possibly_damaging(0.595) TCGA-G3-A6UC-01 4 81123282 81123282 C A PRDM8 Silent p.G222G 0.44 TCGA-G3-A6UC-01 4 87024360 87024360 G A MAPK10 Missense_Mutation p.T135M 0.37 deleterious(0.01) benign(0.035) TCGA-G3-A6UC-01 5 125896800 125896800 T C ALDH7A1 Silent p.E296E 0.35 TCGA-G3-A6UC-01 5 133561530 133561530 T A PPP2CA Missense_Mutation p.K8M 0.12 deleterious_low_confidence(0.05) benign(0.087) TCGA-G3-A6UC-01 5 54763785 54763785 C T PPAP2A Missense_Mutation p.D136N 0.41 tolerated(0.49) benign(0.008) TCGA-G3-A6UC-01 5 55472050 55472050 A G ANKRD55 Silent p.L81L 0.41 TCGA-G3-A6UC-01 5 94994185 94994185 A G SPATA9 3'UTR 0.80 TCGA-G3-A6UC-01 6 116972883 116972883 T A ZUFSP Missense_Mutation p.I390F 0.90 deleterious(0) possibly_damaging(0.803) TCGA-G3-A6UC-01 6 151687721 151687721 C T ZBTB2 Silent p.R160R 0.85 TCGA-G3-A6UC-01 6 151687722 151687722 C A ZBTB2 Missense_Mutation p.R160L 0.85 tolerated(0.26) benign(0.17) TCGA-G3-A6UC-01 6 27222637 27222637 T C PRSS16 Missense_Mutation p.V439A 0.34 deleterious(0) possibly_damaging(0.897) TCGA-G3-A6UC-01 6 32084267 32084267 C T ATF6B Missense_Mutation p.M624I 0.30 tolerated(0.09) probably_damaging(0.989) TCGA-G3-A6UC-01 6 32166274 32166274 C A NOTCH4 Silent p.A1560A 0.39 TCGA-G3-A6UC-01 6 43155007 43155007 C T CUL9 Missense_Mutation p.P471S 0.20 deleterious(0.01) benign(0.045) TCGA-G3-A6UC-01 6 43306248 43306248 T G ZNF318 Missense_Mutation p.M1830L 0.22 benign(0.001) TCGA-G3-A6UC-01 6 73834248 73834248 T C KCNQ5 Intron 0.65 TCGA-G3-A6UC-01 7 113558467 113558467 A T PPP1R3A Silent p.V195V 0.30 TCGA-G3-A6UC-01 7 129856208 129856208 G A SSMEM1 Silent p.A211A 0.28 TCGA-G3-A6UC-01 7 131829964 131829964 G T PLXNA4 Silent p.I1713I 0.23 TCGA-G3-A6UC-01 7 20685646 20685646 T A ABCB5 Missense_Mutation p.V289E 0.25 deleterious(0) benign(0.377) TCGA-G3-A6UC-01 7 23545860 23545860 C G TRA2A Missense_Mutation p.G223R 0.34 tolerated(0.24) unknown(0) TCGA-G3-A6UC-01 7 43846653 43846653 C G BLVRA Missense_Mutation p.S237C 0.38 tolerated(0.29) benign(0.006) TCGA-G3-A6UC-01 7 49842436 49842436 G T VWC2 Missense_Mutation p.G276C 0.08 deleterious(0) probably_damaging(1) TCGA-G3-A6UC-01 7 57529339 57529339 T A ZNF716 Nonsense_Mutation p.L391* 0.45 TCGA-G3-A6UC-01 7 72277659 72277659 C G TYW1B Missense_Mutation p.K241N 0.27 deleterious(0.05) benign(0.017) TCGA-G3-A6UC-01 7 90896442 90896442 T A FZD1 3'UTR 0.33 TCGA-G3-A6UC-01 7 94027070 94027070 G A COL1A2 Silent p.E27E 0.28 TCGA-G3-A6UC-01 8 102504805 102504805 T G GRHL2 5'UTR 0.50 TCGA-G3-A6UC-01 8 146067786 146067786 C T ZNF7 Nonsense_Mutation p.Q432* 0.33 TCGA-G3-A6UC-01 8 33361419 33361419 A T TTI2 Missense_Mutation p.I321N 0.82 deleterious(0) probably_damaging(0.936) TCGA-G3-A6UC-01 8 38386043 38386043 T C C8orf86 Missense_Mutation p.E38G 0.70 deleterious_low_confidence(0) benign(0.003) TCGA-G3-A6UC-01 9 127174695 127174695 G C PSMB7 Missense_Mutation p.L111V 0.48 deleterious(0.02) possibly_damaging(0.873) TCGA-G3-A6UC-01 9 129595723 129595723 A T ZBTB43 Missense_Mutation p.D312V 0.33 deleterious(0.02) possibly_damaging(0.795) TCGA-G3-A6UC-01 9 133327679 133327679 G T ASS1 Missense_Mutation p.V22L 0.47 tolerated(0.65) benign(0.026) TCGA-G3-A6UC-01 9 21334479 21334479 T C KLHL9 Missense_Mutation p.E127G 0.39 tolerated(0.3) possibly_damaging(0.542) TCGA-G3-A6UC-01 9 37440805 37440805 G T ZBTB5 Missense_Mutation p.P582T 0.49 deleterious(0) probably_damaging(0.998) TCGA-G3-A6UC-01 9 4544613 4544613 T C SLC1A1 Silent p.T46T 0.25 TCGA-G3-A6UC-01 9 6604681 6604681 A T GLDC Missense_Mutation p.V322E 0.26 deleterious(0) probably_damaging(0.993) TCGA-G3-A6UC-01 9 7103697 7103697 T G KDM4C Missense_Mutation p.C813G 0.13 deleterious(0) probably_damaging(0.991) TCGA-G3-A6UC-01 9 7103698 7103698 G A KDM4C Missense_Mutation p.C813Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-G3-A6UC-01 X 107939705 107939705 T C COL4A5 3'UTR 0.97 TCGA-G3-A6UC-01 X 107977380 107977380 T C IRS4 Missense_Mutation p.H732R 0.91 deleterious(0.04) unknown(0) TCGA-G3-A6UC-01 X 129499410 129499410 T C SLC25A14 Intron 0.94 TCGA-G3-A6UC-01 X 151869392 151869392 G T MAGEA6 Missense_Mutation p.A28S 0.32 tolerated(0.06) probably_damaging(0.961) TCGA-G3-A6UC-01 X 151870008 151870008 G T MAGEA6 Missense_Mutation p.G233V 0.04 deleterious(0) probably_damaging(0.941) TCGA-G3-A6UC-01 X 78618461 78618461 G C ITM2A Missense_Mutation p.A140G 0.89 tolerated(0.4) possibly_damaging(0.639) TCGA-G3-A6UC-01 X 90690655 90690655 C T PABPC5 Missense_Mutation p.P27S 0.25 tolerated(0.07) benign(0.056) TCGA-G3-A7M5-01 10 101124744 101124744 G - CNNM1 Frame_Shift_Del p.G721Dfs*6 0.41 TCGA-G3-A7M5-01 10 115959029 115959029 T C TDRD1 Missense_Mutation p.L161S 0.55 deleterious(0) probably_damaging(0.934) TCGA-G3-A7M5-01 10 116048949 116048949 G T VWA2 Missense_Mutation p.G608V 0.50 tolerated(0.06) possibly_damaging(0.721) TCGA-G3-A7M5-01 10 24813464 24813464 C G KIAA1217 Missense_Mutation p.S890C 0.45 deleterious(0) probably_damaging(0.93) TCGA-G3-A7M5-01 10 30986401 30986401 T A SVILP1 RNA 0.37 TCGA-G3-A7M5-01 10 46272808 46272808 A T FAM21C Nonsense_Mutation p.K744* 0.46 TCGA-G3-A7M5-01 10 55912909 55912909 A T PCDH15 Missense_Mutation p.Y579N 0.19 deleterious(0) probably_damaging(0.999) TCGA-G3-A7M5-01 10 62647978 62647978 G A RHOBTB1 Missense_Mutation p.T483M 0.49 tolerated(0.12) probably_damaging(0.96) TCGA-G3-A7M5-01 10 64975367 64975367 A - JMJD1C Frame_Shift_Del p.I256Mfs*34 0.12 TCGA-G3-A7M5-01 10 70730090 70730090 A T DDX21 Missense_Mutation p.N457I 0.15 deleterious(0) benign(0.27) TCGA-G3-A7M5-01 10 75551817 75551817 G T ZSWIM8 Missense_Mutation p.C507F 0.21 deleterious(0) probably_damaging(0.996) TCGA-G3-A7M5-01 10 99161091 99161091 T A RRP12 5'UTR 0.42 TCGA-G3-A7M5-01 11 105769114 105769114 A T GRIA4 Silent p.L282L 0.40 TCGA-G3-A7M5-01 11 12265545 12265545 C T MICAL2 Silent p.L890L 0.07 TCGA-G3-A7M5-01 11 123524465 123524465 A T SCN3B Silent p.L15L 0.53 TCGA-G3-A7M5-01 11 128781082 128781082 G T KCNJ5 Intron 0.44 TCGA-G3-A7M5-01 11 129751605 129751629 AAAAAAGAGCATCTTACCTCGACTT - NFRKB Splice_Site p.X462_splice 0.26 TCGA-G3-A7M5-01 11 18253952 18253952 T C SAA4 Missense_Mutation p.K74E 0.29 tolerated(0.55) probably_damaging(0.989) TCGA-G3-A7M5-01 11 19077115 19077115 A T MRGPRX2 Missense_Mutation p.Y279N 0.36 deleterious(0) probably_damaging(0.999) TCGA-G3-A7M5-01 11 48285788 48285788 A T OR4X1 Nonsense_Mutation p.K126* 0.34 TCGA-G3-A7M5-01 11 55371245 55371245 C T OR4C11 Missense_Mutation p.G202E 0.15 deleterious(0) probably_damaging(0.998) TCGA-G3-A7M5-01 11 55433436 55433436 T C OR4C6 Missense_Mutation p.I265T 0.35 deleterious_low_confidence(0.04) possibly_damaging(0.9) TCGA-G3-A7M5-01 11 55798176 55798176 T A OR5AS1 Silent p.P94P 0.46 TCGA-G3-A7M5-01 11 55905001 55905001 T A OR8J3 Missense_Mutation p.H65L 0.45 deleterious(0) benign(0.367) TCGA-G3-A7M5-01 11 56344760 56344760 A T OR5M10 Silent p.T146T 0.39 TCGA-G3-A7M5-01 11 57147137 57147137 A T PRG3 Missense_Mutation p.C69S 0.30 tolerated(0.44) benign(0.045) TCGA-G3-A7M5-01 11 5758461 5758461 T A OR56B1 Missense_Mutation p.S239T 0.46 tolerated(0.21) probably_damaging(0.98) TCGA-G3-A7M5-01 11 65391690 65391690 A T PCNXL3 Missense_Mutation p.S857C 0.33 deleterious(0) probably_damaging(0.995) TCGA-G3-A7M5-01 11 85373173 85373173 T - CREBZF 3'UTR 0.16 TCGA-G3-A7M5-01 11 94732419 94732419 A G KDM4D 3'UTR 0.39 TCGA-G3-A7M5-01 12 108589596 108589596 G A WSCD2 5'UTR 0.36 TCGA-G3-A7M5-01 12 113553065 113553065 G T RASAL1 Missense_Mutation p.D336E 0.25 tolerated(0.78) possibly_damaging(0.831) TCGA-G3-A7M5-01 12 122261330 122261330 C T SETD1B Silent p.S1572S 0.38 TCGA-G3-A7M5-01 12 122717409 122717409 C A VPS33A Missense_Mutation p.R516L 0.37 tolerated(0.27) benign(0.237) TCGA-G3-A7M5-01 12 20523005 20523005 G T PDE3A Missense_Mutation p.A263S 0.57 tolerated(0.56) benign(0.002) TCGA-G3-A7M5-01 12 5155224 5155224 A G KCNA5 3'UTR 0.36 TCGA-G3-A7M5-01 12 52452600 52452600 G C NR4A1 Missense_Mutation p.G570R 0.53 deleterious(0.05) probably_damaging(1) TCGA-G3-A7M5-01 12 71977559 71977559 C A LGR5 Missense_Mutation p.S590Y 0.41 deleterious(0) probably_damaging(0.968) TCGA-G3-A7M5-01 12 71977560 71977560 C A LGR5 Silent p.S590S 0.41 TCGA-G3-A7M5-01 12 78604594 78604594 T A NAV3 3'Flank 0.64 TCGA-G3-A7M5-01 12 85554467 85554467 G T LRRIQ1 Missense_Mutation p.Q1599H 0.41 tolerated(0.13) benign(0.004) TCGA-G3-A7M5-01 12 96360279 96360279 T G AMDHD1 Missense_Mutation p.S396A 0.24 tolerated(1) benign(0.001) TCGA-G3-A7M5-01 13 21721487 21721487 A - SAP18 3'UTR 0.23 TCGA-G3-A7M5-01 13 23910455 23910455 T G SACS Silent p.T2520T 0.37 TCGA-G3-A7M5-01 13 25043232 25043232 T A PARP4 Missense_Mutation p.E688V 0.19 tolerated(0.11) benign(0.051) TCGA-G3-A7M5-01 13 29855851 29855851 T A MTUS2 Missense_Mutation p.F895L 0.28 tolerated(0.1) possibly_damaging(0.616) TCGA-G3-A7M5-01 13 39454462 39454462 A T FREM2 Silent p.T3016T 0.38 TCGA-G3-A7M5-01 14 19553603 19553603 A T POTEG Nonsense_Mutation p.K63* 0.12 TCGA-G3-A7M5-01 14 20020034 20020034 T A POTEM Nonsense_Mutation p.K63* 0.09 TCGA-G3-A7M5-01 14 20760207 20760207 T G TTC5 Missense_Mutation p.I380L 0.43 deleterious(0.01) possibly_damaging(0.638) TCGA-G3-A7M5-01 14 21945395 21945395 G A TOX4 5'UTR 0.18 TCGA-G3-A7M5-01 14 24837345 24837345 G A NFATC4 Intron 0.50 TCGA-G3-A7M5-01 14 70245100 70245110 AGCCCTTCTCC - SLC10A1 Frame_Shift_Del p.G295Sfs*10 0.25 TCGA-G3-A7M5-01 14 70990228 70990228 T A ADAM20 Missense_Mutation p.E466V 0.35 deleterious(0) probably_damaging(0.995) TCGA-G3-A7M5-01 14 95677202 95677202 A T CLMN Missense_Mutation p.V208E 0.40 deleterious(0) probably_damaging(1) TCGA-G3-A7M5-01 14 96875253 96875253 G A AK7 Nonsense_Mutation p.W158* 0.36 TCGA-G3-A7M5-01 15 102496046 102496046 A T FAM138E RNA 0.24 TCGA-G3-A7M5-01 15 34109120 34109120 G - RYR3 Frame_Shift_Del p.E3521Sfs*8 0.27 TCGA-G3-A7M5-01 15 42729475 42729475 T C ZNF106 Silent p.L1544L 0.24 TCGA-G3-A7M5-01 15 48058329 48058329 T A SEMA6D Nonsense_Mutation p.Y532* 0.11 TCGA-G3-A7M5-01 15 48513119 48513119 T A SLC12A1 Missense_Mutation p.V185E 0.43 deleterious(0) probably_damaging(0.998) TCGA-G3-A7M5-01 15 49882193 49882193 T A FAM227B Silent p.P39P 0.43 TCGA-G3-A7M5-01 15 57976739 57976739 G - GCOM1 Intron 0.29 TCGA-G3-A7M5-01 15 65621468 65621468 C T IGDCC3 Missense_Mutation p.A742T 0.54 tolerated_low_confidence(0.43) benign(0) TCGA-G3-A7M5-01 15 74925259 74925259 G A EDC3 Silent p.V407V 0.27 TCGA-G3-A7M5-01 15 75659938 75659938 G C MAN2C1 Missense_Mutation p.P89A 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-G3-A7M5-01 15 89402447 89402447 G A ACAN Missense_Mutation p.V2211I 0.40 tolerated(0.49) benign(0.079) TCGA-G3-A7M5-01 15 91424605 91424605 A G FURIN Missense_Mutation p.S628G 0.22 tolerated(0.35) benign(0.001) TCGA-G3-A7M5-01 16 14304134 14304134 A G MKL2 Silent p.R63R 0.46 TCGA-G3-A7M5-01 16 21071601 21071601 A T DNAH3 Missense_Mutation p.I1266N 0.17 tolerated(0.12) benign(0.048) TCGA-G3-A7M5-01 16 21995541 21995541 A T PDZD9 3'UTR 0.55 TCGA-G3-A7M5-01 16 26147301 26147301 T A HS3ST4 Missense_Mutation p.M368K 0.52 deleterious(0) probably_damaging(0.953) TCGA-G3-A7M5-01 16 30536792 30536792 C T ZNF768 Silent p.L223L 0.09 TCGA-G3-A7M5-01 16 4827877 4827877 G C SEPT12 Missense_Mutation p.A333G 0.50 deleterious(0.02) benign(0.004) TCGA-G3-A7M5-01 16 56660821 56660821 G T MT1E Missense_Mutation p.A42S 0.57 tolerated(0.13) possibly_damaging(0.694) TCGA-G3-A7M5-01 16 84270675 84270675 G A KCNG4 Silent p.C139C 0.51 TCGA-G3-A7M5-01 16 85114999 85114999 G A KIAA0513 Splice_Site p.X327_splice 0.40 TCGA-G3-A7M5-01 17 18088100 18088100 C T ALKBH5 Silent p.V181V 0.45 TCGA-G3-A7M5-01 17 20224847 20224847 A T AC004702.2 Intron 0.37 TCGA-G3-A7M5-01 17 32964875 32964875 T A TMEM132E Missense_Mutation p.L860Q 0.52 tolerated(0.07) probably_damaging(1) TCGA-G3-A7M5-01 17 34945649 34945649 A G GGNBP2 Silent p.E634E 0.06 TCGA-G3-A7M5-01 17 38937443 38937443 A T KRT27 Missense_Mutation p.L175Q 0.29 deleterious(0.01) possibly_damaging(0.87) TCGA-G3-A7M5-01 17 61972364 61972364 A T CSH1 3'UTR 0.32 TCGA-G3-A7M5-01 17 68128987 68128987 T A KCNJ16 Silent p.I253I 0.47 TCGA-G3-A7M5-01 17 6945968 6945968 A G SLC16A11 Missense_Mutation p.L178P 0.29 deleterious(0) probably_damaging(0.938) TCGA-G3-A7M5-01 18 14543302 14543302 A G POTEC 5'Flank 0.14 TCGA-G3-A7M5-01 18 34273025 34273025 T A FHOD3 Intron 0.64 TCGA-G3-A7M5-01 18 52262216 52262216 G A DYNAP Nonsense_Mutation p.W61* 0.58 TCGA-G3-A7M5-01 18 61089526 61089526 G T VPS4B 5'UTR 0.08 TCGA-G3-A7M5-01 18 6978215 6978215 A T LAMA1 Missense_Mutation p.L2057Q 0.47 deleterious(0.01) probably_damaging(0.943) TCGA-G3-A7M5-01 19 20307961 20307961 A T ZNF486 Missense_Mutation p.T148S 0.37 tolerated(0.05) benign(0.003) TCGA-G3-A7M5-01 19 37440867 37440867 T A ZNF568 Missense_Mutation p.I271N 0.44 deleterious(0) probably_damaging(0.999) TCGA-G3-A7M5-01 19 3784140 3784140 G A MATK Missense_Mutation p.P116L 0.49 tolerated(0.1) probably_damaging(0.951) TCGA-G3-A7M5-01 19 40877640 40877640 A T PLD3 Missense_Mutation p.I247F 0.35 deleterious(0) probably_damaging(0.973) TCGA-G3-A7M5-01 19 43864551 43864551 G A CD177 3'UTR 0.34 TCGA-G3-A7M5-01 19 47181845 47181845 C T PRKD2 Missense_Mutation p.A716T 0.09 deleterious(0) probably_damaging(0.999) TCGA-G3-A7M5-01 19 48643272 48643272 C A LIG1 Missense_Mutation p.G348V 0.30 deleterious(0) probably_damaging(1) TCGA-G3-A7M5-01 19 48643273 48643273 C A LIG1 Missense_Mutation p.G348C 0.29 deleterious(0) probably_damaging(1) TCGA-G3-A7M5-01 19 51015948 51015948 G A ASPDH Silent p.I134I 0.16 TCGA-G3-A7M5-01 19 51301354 51301354 A - C19orf48 Frame_Shift_Del p.*118E 0.32 TCGA-G3-A7M5-01 19 5144869 5144869 T A KDM4B Missense_Mutation p.Y993N 0.38 possibly_damaging(0.86) TCGA-G3-A7M5-01 19 54074888 54074888 G A ZNF331 Missense_Mutation p.D14N 0.36 tolerated(0.09) benign(0.009) TCGA-G3-A7M5-01 19 54233100 54233100 T A MIR518E RNA 0.40 TCGA-G3-A7M5-01 19 54308582 54308582 A G NLRP12 Missense_Mutation p.L789P 0.16 deleterious(0.02) probably_damaging(0.988) TCGA-G3-A7M5-01 19 55263853 55263853 A T KIR2DL3 Missense_Mutation p.Y303F 0.50 tolerated(0.05) probably_damaging(0.968) TCGA-G3-A7M5-01 19 56538847 56538847 G T NLRP5 Missense_Mutation p.K416N 0.22 deleterious(0.03) benign(0.444) TCGA-G3-A7M5-01 19 56953879 56953879 T A ZNF667 Missense_Mutation p.H162L 0.43 deleterious(0) probably_damaging(0.998) TCGA-G3-A7M5-01 19 6857199 6857199 C A VAV1 3'Flank 0.42 TCGA-G3-A7M5-01 19 9062327 9062327 T A MUC16 Silent p.S8373S 0.36 TCGA-G3-A7M5-01 19 9082590 9082590 A T MUC16 Silent p.A3075A 0.44 TCGA-G3-A7M5-01 1 108152569 108152569 A T VAV3 Missense_Mutation p.Y667N 0.38 deleterious(0.01) probably_damaging(0.918) TCGA-G3-A7M5-01 1 113657138 113657138 G A LRIG2 Missense_Mutation p.A724T 0.29 tolerated(0.15) benign(0.003) TCGA-G3-A7M5-01 1 152128332 152128332 A T RPTN Missense_Mutation p.Y415N 0.52 tolerated(0.05) benign(0.446) TCGA-G3-A7M5-01 1 157740434 157740434 G - FCRL2 Frame_Shift_Del p.S26Lfs*11 0.32 TCGA-G3-A7M5-01 1 159175433 159175433 C T DARC Silent p.T70T 0.43 TCGA-G3-A7M5-01 1 161723027 161723027 T G DUSP12 Silent p.A279A 0.38 TCGA-G3-A7M5-01 1 163043349 163043349 T A RGS4 Silent p.S202S 0.39 TCGA-G3-A7M5-01 1 176838062 176838062 G A ASTN1 Missense_Mutation p.H1189Y 0.33 tolerated(0.65) benign(0.343) TCGA-G3-A7M5-01 1 179600021 179600021 A T TDRD5 Silent p.L364L 0.36 TCGA-G3-A7M5-01 1 180904396 180904396 C A KIAA1614 Missense_Mutation p.R451S 0.37 deleterious(0) probably_damaging(0.999) TCGA-G3-A7M5-01 1 181689967 181689967 T A CACNA1E Silent p.P644P 0.30 TCGA-G3-A7M5-01 1 181702886 181702886 A T CACNA1E Missense_Mutation p.I1088F 0.37 tolerated(0.07) benign(0.227) TCGA-G3-A7M5-01 1 183207463 183207463 C A LAMC2 Missense_Mutation p.R926S 0.42 deleterious(0) probably_damaging(0.984) TCGA-G3-A7M5-01 1 185137519 185137519 A T SWT1 Missense_Mutation p.Q71H 0.54 tolerated(0.13) benign(0.007) TCGA-G3-A7M5-01 1 192129516 192129516 C T RGS18 Missense_Mutation p.P77L 0.44 deleterious(0.04) benign(0.12) TCGA-G3-A7M5-01 1 198711127 198711127 T C PTPRC Missense_Mutation p.F845L 0.04 deleterious(0) probably_damaging(0.999) TCGA-G3-A7M5-01 1 208252776 208252776 T A PLXNA2 Silent p.A805A 0.40 TCGA-G3-A7M5-01 1 212798434 212798434 G C FAM71A Missense_Mutation p.G72A 0.35 tolerated(0.12) possibly_damaging(0.851) TCGA-G3-A7M5-01 1 231471360 231471360 G C EXOC8 Missense_Mutation p.S711C 0.36 deleterious_low_confidence(0.04) benign(0.43) TCGA-G3-A7M5-01 1 237804194 237804194 A C RYR2 Intron 0.18 TCGA-G3-A7M5-01 1 237804197 237804197 T G RYR2 Silent p.L2372L 0.18 TCGA-G3-A7M5-01 1 3329100 3329100 A G PRDM16 Missense_Mutation p.K780R 0.21 tolerated(0.05) probably_damaging(0.945) TCGA-G3-A7M5-01 1 34667730 34667730 C A C1orf94 Missense_Mutation p.T439K 0.49 deleterious(0.01) possibly_damaging(0.57) TCGA-G3-A7M5-01 1 40704853 40704853 A T RLF Silent p.V1493V 0.25 TCGA-G3-A7M5-01 1 41236331 41236331 A T NFYC Intron 0.60 TCGA-G3-A7M5-01 1 46184955 46184955 T G IPP Missense_Mutation p.Q369P 0.61 deleterious(0.02) probably_damaging(0.99) TCGA-G3-A7M5-01 1 6694243 6694243 G T DNAJC11 3'UTR 0.58 TCGA-G3-A7M5-01 1 70505455 70505455 A G LRRC7 Missense_Mutation p.I1278M 0.23 deleterious(0) probably_damaging(0.996) TCGA-G3-A7M5-01 1 74549849 74549849 T A LRRIQ3 Intron 0.27 TCGA-G3-A7M5-01 1 75716965 75716965 A T SLC44A5 Nonsense_Mutation p.L92* 0.30 TCGA-G3-A7M5-01 1 86919189 86919189 C A CLCA2 Missense_Mutation p.P765T 0.44 deleterious(0) probably_damaging(1) TCGA-G3-A7M5-01 1 878348 878348 G - SAMD11 Frame_Shift_Del p.G492Efs*33 0.36 TCGA-G3-A7M5-01 1 92554445 92554445 T - BTBD8 Frame_Shift_Del p.L115Yfs*11 0.37 TCGA-G3-A7M5-01 20 20033133 20033133 T A CRNKL1 Nonsense_Mutation p.R113* 0.34 TCGA-G3-A7M5-01 20 20563863 20563863 A T RALGAPA2 Missense_Mutation p.S846R 0.46 tolerated(0.06) possibly_damaging(0.797) TCGA-G3-A7M5-01 20 3211392 3211392 G A SLC4A11 Missense_Mutation p.A466V 0.10 deleterious(0.04) possibly_damaging(0.666) TCGA-G3-A7M5-01 20 42089474 42089474 A G SRSF6 Missense_Mutation p.Y269C 0.14 tolerated(0.15) unknown(0) TCGA-G3-A7M5-01 20 45130663 45130663 C T ZNF334 Missense_Mutation p.G439R 0.33 deleterious(0.03) benign(0.036) TCGA-G3-A7M5-01 20 48568649 48568649 G T RNF114 Missense_Mutation p.V220L 0.12 deleterious(0.01) benign(0.112) TCGA-G3-A7M5-01 20 48808727 48808727 G A CEBPB 3'UTR 0.08 TCGA-G3-A7M5-01 20 5528106 5528106 A G GPCPD1 3'UTR 0.15 TCGA-G3-A7M5-01 20 5904188 5904188 G A CHGB Silent p.E466E 0.42 TCGA-G3-A7M5-01 20 8713899 8713899 A G PLCB1 Missense_Mutation p.I635V 0.50 deleterious(0.03) benign(0.039) TCGA-G3-A7M5-01 21 41151111 41151111 A T IGSF5 Silent p.L271L 0.43 TCGA-G3-A7M5-01 21 47566181 47566181 C - FTCD Frame_Shift_Del p.E323Sfs*55 0.29 TCGA-G3-A7M5-01 22 28426324 28426325 - TCA TTC28 In_Frame_Ins p.S1320_E1321insD 0.24 TCGA-G3-A7M5-01 22 29130468 29130468 T G CHEK2 Missense_Mutation p.E81A 0.21 deleterious_low_confidence(0.01) probably_damaging(0.916) TCGA-G3-A7M5-01 22 35812706 35812706 G C MCM5 Missense_Mutation p.E497Q 0.41 deleterious(0) possibly_damaging(0.632) TCGA-G3-A7M5-01 22 42086739 42086739 T G C22orf46 Silent p.P36P 0.22 TCGA-G3-A7M5-01 22 50961823 50961823 G A NCAPH2 3'UTR 0.38 TCGA-G3-A7M5-01 2 121728098 121728098 C A GLI2 Silent p.A325A 0.45 TCGA-G3-A7M5-01 2 121728099 121728099 C A GLI2 Missense_Mutation p.Q326K 0.44 deleterious(0.02) probably_damaging(0.966) TCGA-G3-A7M5-01 2 148653868 148653868 A T ACVR2A Splice_Site p.X19_splice 0.48 TCGA-G3-A7M5-01 2 148653985 148653987 GCG CC ACVR2A Frame_Shift_Del p.H59Ifs*15 0.17 TCGA-G3-A7M5-01 2 1652347 1652347 C A PXDN Missense_Mutation p.A1069S 0.46 deleterious(0) probably_damaging(0.999) TCGA-G3-A7M5-01 2 185800725 185800725 G T ZNF804A Missense_Mutation p.G201V 0.33 deleterious(0.01) possibly_damaging(0.71) TCGA-G3-A7M5-01 2 187697904 187697904 T A ZSWIM2 Missense_Mutation p.Y295F 0.33 tolerated(0.47) possibly_damaging(0.677) TCGA-G3-A7M5-01 2 198948585 198948585 T A PLCL1 Missense_Mutation p.M115K 0.38 deleterious(0) probably_damaging(0.99) TCGA-G3-A7M5-01 2 28752185 28752185 C A PLB1 Silent p.V109V 0.42 TCGA-G3-A7M5-01 2 29226440 29226440 C T FAM179A Missense_Mutation p.P241L 0.07 tolerated(0.05) benign(0.018) TCGA-G3-A7M5-01 2 42530527 42530527 A T EML4 Missense_Mutation p.R614W 0.43 deleterious(0) probably_damaging(0.983) TCGA-G3-A7M5-01 2 50149019 50149019 T A NRXN1 3'UTR 0.37 TCGA-G3-A7M5-01 2 61520656 61520656 T C USP34 Silent p.L1497L 0.20 TCGA-G3-A7M5-01 2 69034418 69034418 G A ARHGAP25 Silent p.Q160Q 0.37 TCGA-G3-A7M5-01 2 71127944 71127944 G A VAX2 Missense_Mutation p.D65N 0.47 tolerated(0.13) benign(0.015) TCGA-G3-A7M5-01 2 71650150 71650150 C G ZNF638 Missense_Mutation p.T1169S 0.34 tolerated(0.14) benign(0.004) TCGA-G3-A7M5-01 2 84880551 84880551 G C DNAH6 Missense_Mutation p.E1729D 0.40 tolerated(0.17) benign(0.025) TCGA-G3-A7M5-01 2 89339962 89339962 A T IGKV1-12 Missense_Mutation p.V37E 0.24 deleterious(0.01) possibly_damaging(0.539) TCGA-G3-A7M5-01 3 119530549 119530549 C G NR1I2 Silent p.T204T 0.47 TCGA-G3-A7M5-01 3 121712452 121712452 C A ILDR1 Missense_Mutation p.D382Y 0.53 deleterious(0.02) benign(0.003) TCGA-G3-A7M5-01 3 126135180 126135180 A T CCDC37 Missense_Mutation p.M83L 0.27 tolerated(0.89) benign(0) TCGA-G3-A7M5-01 3 136196226 136196226 A T STAG1 Missense_Mutation p.C311S 0.49 deleterious(0) probably_damaging(0.979) TCGA-G3-A7M5-01 3 152553693 152553693 A T P2RY1 Missense_Mutation p.K41I 0.50 deleterious(0.01) benign(0.023) TCGA-G3-A7M5-01 3 168840403 168840403 T A MECOM Missense_Mutation p.S191C 0.46 deleterious(0) probably_damaging(0.944) TCGA-G3-A7M5-01 3 169802417 169802417 A C GPR160 Missense_Mutation p.E219D 0.49 deleterious(0.01) possibly_damaging(0.725) TCGA-G3-A7M5-01 3 183381339 183381339 A T KLHL24 Silent p.V338V 0.55 TCGA-G3-A7M5-01 3 189028173 189028173 A T TPRG1 Splice_Site p.X160_splice 0.21 TCGA-G3-A7M5-01 3 195507965 195507965 A T MUC4 Missense_Mutation p.S3496T 0.08 possibly_damaging(0.702) TCGA-G3-A7M5-01 3 195511179 195511179 T A MUC4 Silent p.S2424S 0.09 TCGA-G3-A7M5-01 3 27759263 27759263 T C EOMES Intron 0.42 TCGA-G3-A7M5-01 3 3084827 3084827 A T CNTN4 Missense_Mutation p.N893I 0.26 deleterious(0.01) probably_damaging(0.988) TCGA-G3-A7M5-01 3 48732073 48732073 C A IP6K2 Intron 0.25 TCGA-G3-A7M5-01 3 49060610 49060610 C A NDUFAF3 3'UTR 0.17 TCGA-G3-A7M5-01 3 54880437 54880437 T A CACNA2D3 Nonsense_Mutation p.Y523* 0.21 TCGA-G3-A7M5-01 3 57148802 57148802 A T IL17RD Silent p.A76A 0.53 TCGA-G3-A7M5-01 3 64084768 64084768 T A PRICKLE2 Missense_Mutation p.S832C 0.19 tolerated(0.08) possibly_damaging(0.471) TCGA-G3-A7M5-01 3 97983418 97983418 T G OR5H6 Missense_Mutation p.M97R 0.24 deleterious(0) possibly_damaging(0.905) TCGA-G3-A7M5-01 4 1918629 1918629 A T WHSC1 Silent p.V264V 0.80 TCGA-G3-A7M5-01 4 20487848 20487848 A T SLIT2 Nonsense_Mutation p.R189* 0.76 TCGA-G3-A7M5-01 4 38995620 38995620 T A TMEM156 Splice_Site p.X120_splice 0.77 TCGA-G3-A7M5-01 4 43032535 43032535 G A GRXCR1 Missense_Mutation p.R284H 0.17 tolerated(0.05) possibly_damaging(0.792) TCGA-G3-A7M5-01 4 6055550 6055550 A T JAKMIP1 Intron 0.91 TCGA-G3-A7M5-01 4 80327914 80327914 C T GK2 Missense_Mutation p.V481I 0.21 tolerated(0.44) benign(0.028) TCGA-G3-A7M5-01 4 87622936 87622936 G A PTPN13 Missense_Mutation p.E393K 0.78 tolerated(0.07) benign(0.025) TCGA-G3-A7M5-01 5 102515845 102515845 A T PPIP5K2 Missense_Mutation p.R960W 0.24 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-G3-A7M5-01 5 114916995 114916995 T C TMED7-TICAM2 Intron 0.16 TCGA-G3-A7M5-01 5 118407346 118407346 T G DMXL1 Missense_Mutation p.F28V 0.20 deleterious(0.01) benign(0.014) TCGA-G3-A7M5-01 5 135388630 135388630 G C TGFBI Missense_Mutation p.M316I 0.32 tolerated(0.06) benign(0.033) TCGA-G3-A7M5-01 5 139838859 139838859 A G ANKHD1 Missense_Mutation p.I531V 0.30 unknown(0) TCGA-G3-A7M5-01 5 140532779 140532779 G C PCDHB6 3'UTR 0.33 TCGA-G3-A7M5-01 5 140555910 140555910 T G PCDHB7 3'UTR 0.12 TCGA-G3-A7M5-01 5 140793533 140793533 A T PCDHGA10 Missense_Mutation p.Q264L 0.32 tolerated_low_confidence(0.17) benign(0.007) TCGA-G3-A7M5-01 5 148682070 148682070 T C AFAP1L1 Silent p.P139P 0.27 TCGA-G3-A7M5-01 5 150946663 150946663 A T FAT2 Missense_Mutation p.F610L 0.34 probably_damaging(0.999) TCGA-G3-A7M5-01 5 156816275 156816275 C T CYFIP2 Silent p.L1070L 0.58 TCGA-G3-A7M5-01 5 33576426 33576426 T C ADAMTS12 Silent p.R1235R 0.50 TCGA-G3-A7M5-01 5 45353293 45353293 T A HCN1 Missense_Mutation p.Q429L 0.36 deleterious(0.01) benign(0.113) TCGA-G3-A7M5-01 5 52386460 52386460 C A ITGA2 3'UTR 0.48 TCGA-G3-A7M5-01 5 74981226 74981226 C G POC5 Missense_Mutation p.A405P 0.34 tolerated(0.17) probably_damaging(0.991) TCGA-G3-A7M5-01 5 87494949 87494949 G T TMEM161B Missense_Mutation p.F311L 0.44 deleterious(0) possibly_damaging(0.589) TCGA-G3-A7M5-01 6 131958486 131958486 T A ENPP3 5'UTR 0.78 TCGA-G3-A7M5-01 6 146720714 146720714 C G GRM1 Missense_Mutation p.R847G 0.77 deleterious(0) probably_damaging(1) TCGA-G3-A7M5-01 6 17794911 17794911 T A KIF13A Silent p.I989I 0.37 TCGA-G3-A7M5-01 6 33259802 33259802 T G RGL2 3'UTR 0.18 TCGA-G3-A7M5-01 6 33643557 33643557 C T ITPR3 Missense_Mutation p.P1069L 0.28 deleterious(0.02) benign(0.052) TCGA-G3-A7M5-01 6 42986094 42986094 G A KLHDC3 Missense_Mutation p.R178H 0.53 tolerated(0.46) possibly_damaging(0.902) TCGA-G3-A7M5-01 7 100348276 100348276 C T ZAN Silent p.D426D 0.28 TCGA-G3-A7M5-01 7 123097530 123097530 T A IQUB Nonsense_Mutation p.R700* 0.43 TCGA-G3-A7M5-01 7 143633139 143633139 A - OR2F2 Frame_Shift_Del p.K272Sfs*2 0.34 TCGA-G3-A7M5-01 7 150034126 150034126 A G LRRC61 Missense_Mutation p.D59G 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-G3-A7M5-01 7 21757498 21757498 A T DNAH11 Silent p.T2370T 0.16 TCGA-G3-A7M5-01 7 29874394 29874394 G T WIPF3 Silent p.L18L 0.13 TCGA-G3-A7M5-01 7 31855598 31855599 CA - PDE1C Frame_Shift_Del p.S644Rfs*22 0.28 TCGA-G3-A7M5-01 7 43840096 43840096 T A BLVRA Missense_Mutation p.L129M 0.36 deleterious(0.04) possibly_damaging(0.697) TCGA-G3-A7M5-01 7 57194367 57194367 A T ZNF479 Missense_Mutation p.L33Q 0.29 deleterious(0) probably_damaging(1) TCGA-G3-A7M5-01 7 66270375 66270375 A T KCTD7 Missense_Mutation p.T357S 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-G3-A7M5-01 7 71142287 71142287 C A WBSCR17 Missense_Mutation p.P499Q 0.55 deleterious(0.04) probably_damaging(0.999) TCGA-G3-A7M5-01 7 72420826 72420826 A G POM121 3'UTR 0.42 TCGA-G3-A7M5-01 7 82582709 82582709 T A PCLO Silent p.P2520P 0.16 TCGA-G3-A7M5-01 7 93540290 93540290 A T GNGT1 3'UTR 0.41 TCGA-G3-A7M5-01 7 94029552 94029552 A T COL1A2 Silent p.T59T 0.54 TCGA-G3-A7M5-01 8 125464081 125464081 A T TRMT12 Missense_Mutation p.R305W 0.39 deleterious(0) probably_damaging(1) TCGA-G3-A7M5-01 8 146066877 146066877 G T ZNF7 Nonsense_Mutation p.E129* 0.08 TCGA-G3-A7M5-01 8 73480433 73480433 A T KCNB2 Missense_Mutation p.E155V 0.37 deleterious(0.05) possibly_damaging(0.688) TCGA-G3-A7M5-01 9 101777823 101777823 T C COL15A1 Missense_Mutation p.M493T 0.81 tolerated_low_confidence(0.43) benign(0) TCGA-G3-A7M5-01 9 132636872 132636872 A T USP20 Silent p.L586L 0.72 TCGA-G3-A7M5-01 9 19316784 19316784 C T DENND4C Missense_Mutation p.T585I 0.12 deleterious(0.02) probably_damaging(0.923) TCGA-G3-A7M5-01 9 95232978 95232978 A T ASPN Missense_Mutation p.N120K 0.59 tolerated(0.13) benign(0.049) TCGA-G3-A7M5-01 9 96079849 96079849 G A WNK2 Silent p.A2225A 0.62 TCGA-G3-A7M5-01 X 101970491 101970491 A G GPRASP2 Missense_Mutation p.T232A 0.06 tolerated(0.53) benign(0.006) TCGA-G3-A7M5-01 X 151336877 151336877 G C GABRA3 Silent p.P434P 0.25 TCGA-G3-A7M5-01 X 153295883 153295883 T A MECP2 Missense_Mutation p.M478L 0.44 tolerated(0.45) unknown(0) TCGA-G3-A7M5-01 X 153637534 153637534 T A DNASE1L1 Splice_Site 0.42 TCGA-G3-A7M5-01 X 22056646 22056646 A C PHEX Missense_Mutation p.I60L 0.72 deleterious(0.05) benign(0.028) TCGA-G3-A7M5-01 X 24006693 24006693 C A KLHL15 Missense_Mutation p.R387I 0.89 deleterious(0) probably_damaging(0.961) TCGA-G3-A7M5-01 X 27999289 27999289 T A DCAF8L1 Missense_Mutation p.R55W 0.86 deleterious(0.02) benign(0.338) TCGA-G3-A7M5-01 X 30870987 30870987 G A TAB3 Silent p.L540L 0.28 TCGA-G3-A7M5-01 X 50053768 50053768 A T CCNB3 Missense_Mutation p.S867C 0.85 deleterious(0.02) possibly_damaging(0.864) TCGA-G3-A7M5-01 X 91132752 91132752 C A PCDH11X Missense_Mutation p.L505I 0.81 tolerated(0.16) possibly_damaging(0.85) TCGA-G3-A7M6-01 10 71025434 71025434 C T HKDC1 Silent p.C822C 0.46 TCGA-G3-A7M6-01 10 859073 859073 T - LARP4B Frame_Shift_Del p.E671Nfs*82 0.11 TCGA-G3-A7M6-01 10 87362151 87362151 G T GRID1 Nonsense_Mutation p.S970* 0.21 TCGA-G3-A7M6-01 11 22399318 22399318 T C SLC17A6 3'UTR 0.37 TCGA-G3-A7M6-01 11 428795 428795 G A ANO9 Missense_Mutation p.P316L 0.29 tolerated(0.53) probably_damaging(0.941) TCGA-G3-A7M6-01 11 55587833 55587833 C T OR5D18 Missense_Mutation p.A243V 0.27 deleterious(0.03) benign(0.35) TCGA-G3-A7M6-01 11 58207024 58207024 C A OR5B12 Missense_Mutation p.V201L 0.46 tolerated_low_confidence(0.11) benign(0.093) TCGA-G3-A7M6-01 11 58207025 58207025 C A OR5B12 Silent p.V200V 0.45 TCGA-G3-A7M6-01 11 7273526 7273526 C T SYT9 Silent p.L37L 0.40 TCGA-G3-A7M6-01 12 120580319 120580320 - A GCN1L1 Frame_Shift_Ins p.K1941* 0.29 TCGA-G3-A7M6-01 12 130648395 130648395 G A FZD10 Missense_Mutation p.G303E 0.31 deleterious(0) probably_damaging(1) TCGA-G3-A7M6-01 12 29659707 29659707 G T TMTC1 3'Flank 0.17 TCGA-G3-A7M6-01 12 6125791 6125791 C T VWF Silent p.Q1734Q 0.24 TCGA-G3-A7M6-01 13 113826495 113826495 G A PROZ 3'UTR 0.12 TCGA-G3-A7M6-01 14 21681136 21681136 G A HNRNPC Missense_Mutation p.S182F 0.40 deleterious(0.03) possibly_damaging(0.535) TCGA-G3-A7M6-01 14 33684417 33684417 G T NPAS3 Missense_Mutation p.R57L 0.27 deleterious(0) benign(0.25) TCGA-G3-A7M6-01 14 44976362 44976362 G A FSCB 5'UTR 0.29 TCGA-G3-A7M6-01 14 57268479 57268479 A T OTX2 Missense_Mutation p.S290T 0.45 deleterious(0.04) benign(0.009) TCGA-G3-A7M6-01 14 65417612 65417612 A G RAB15 Intron 0.17 TCGA-G3-A7M6-01 15 22955997 22955997 A C CYFIP1 Intron 0.27 TCGA-G3-A7M6-01 15 25616615 25616615 T C UBE3A Missense_Mutation p.I239V 0.39 tolerated(1) benign(0) TCGA-G3-A7M6-01 15 41961695 41961695 G A MGA Silent p.L201L 0.26 TCGA-G3-A7M6-01 15 50867247 50867247 G A TRPM7 Silent p.L1607L 0.08 TCGA-G3-A7M6-01 15 52521421 52521421 T C MYO5C Missense_Mutation p.E1039G 0.37 deleterious(0.01) possibly_damaging(0.881) TCGA-G3-A7M6-01 15 77057677 77057677 C A SCAPER Splice_Site p.X538_splice 0.25 TCGA-G3-A7M6-01 15 99669633 99669633 T G SYNM Missense_Mutation p.N355K 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-G3-A7M6-01 16 20802201 20802219 GTCCCCTGAGGCCAGATCA - ACSM3 Intron 0.21 TCGA-G3-A7M6-01 16 4431099 4431099 G T VASN Missense_Mutation p.G74V 0.24 deleterious(0) possibly_damaging(0.845) TCGA-G3-A7M6-01 16 57509446 57509446 G C DOK4 Missense_Mutation p.D87E 0.25 tolerated(0.24) benign(0.046) TCGA-G3-A7M6-01 17 18178069 18178069 A G TOP3A 3'UTR 0.09 TCGA-G3-A7M6-01 17 3446875 3446875 T G TRPV3 Missense_Mutation p.K120T 0.75 tolerated(0.07) possibly_damaging(0.506) TCGA-G3-A7M6-01 17 56634214 56634214 G C TEX14 3'UTR 0.19 TCGA-G3-A7M6-01 17 7578205 7578205 C T TP53 Missense_Mutation p.S215N 0.57 deleterious(0) probably_damaging(1) TCGA-G3-A7M6-01 17 79094718 79094718 C G AATK Missense_Mutation p.E1006D 0.27 tolerated(0.16) benign(0.036) TCGA-G3-A7M6-01 18 21110006 21110006 A G C18orf8 Silent p.E503E 0.40 TCGA-G3-A7M6-01 18 2885054 2885054 A G EMILIN2 Missense_Mutation p.D117G 0.38 deleterious(0.01) possibly_damaging(0.832) TCGA-G3-A7M6-01 18 29118942 29118943 - T DSG2 Splice_Site p.X627_splice 0.33 TCGA-G3-A7M6-01 18 67995549 67995549 A T SOCS6 3'UTR 0.44 TCGA-G3-A7M6-01 19 22000753 22000753 G A ZNF43 Silent p.L56L 0.65 TCGA-G3-A7M6-01 19 48965315 48965315 G A KCNJ14 Missense_Mutation p.A112T 0.59 deleterious(0) probably_damaging(1) TCGA-G3-A7M6-01 19 52506956 52506956 C G ZNF615 Missense_Mutation p.Q3H 0.15 tolerated(0.09) benign(0.281) TCGA-G3-A7M6-01 19 9225688 9225688 A G OR7G1 Missense_Mutation p.F251S 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-G3-A7M6-01 1 109241956 109241956 C G PRPF38B Missense_Mutation p.R319G 0.21 tolerated(0.08) unknown(0) TCGA-G3-A7M6-01 1 158549068 158549068 T C OR10X1 Missense_Mutation p.S208G 0.21 tolerated(0.05) benign(0.042) TCGA-G3-A7M6-01 1 16451597 16451597 A G EPHA2 3'UTR 0.10 TCGA-G3-A7M6-01 1 16813101 16813101 G A CROCCP3 RNA 0.32 TCGA-G3-A7M6-01 1 168510343 168510343 A G XCL2 Silent p.R64R 0.12 TCGA-G3-A7M6-01 1 182353689 182353689 T C GLUL Missense_Mutation p.I325V 0.42 tolerated(0.18) benign(0.317) TCGA-G3-A7M6-01 1 208219318 208219318 C - PLXNA2 Frame_Shift_Del p.D1134Tfs*31 0.43 TCGA-G3-A7M6-01 1 222802341 222802341 C G MIA3 Missense_Mutation p.D593E 0.18 tolerated(0.08) benign(0.009) TCGA-G3-A7M6-01 1 223568587 223568587 T C C1orf65 Silent p.P590P 0.23 TCGA-G3-A7M6-01 1 227843314 227843314 C A ZNF678 Missense_Mutation p.H455N 0.19 deleterious(0) probably_damaging(0.997) TCGA-G3-A7M6-01 1 22915685 22915685 C T EPHA8 Missense_Mutation p.T434I 0.29 deleterious(0.01) benign(0.122) TCGA-G3-A7M6-01 1 22970634 22970634 G A C1QC Missense_Mutation p.G40S 0.36 deleterious(0) probably_damaging(0.999) TCGA-G3-A7M6-01 1 237875069 237875069 T G RYR2 Missense_Mutation p.F3419V 0.08 possibly_damaging(0.821) TCGA-G3-A7M6-01 1 248487416 248487416 C G OR2M7 Missense_Mutation p.G152A 0.14 tolerated(0.09) probably_damaging(0.993) TCGA-G3-A7M6-01 1 34258042 34258042 T C CSMD2 Missense_Mutation p.Q471R 0.34 tolerated(0.4) possibly_damaging(0.828) TCGA-G3-A7M6-01 1 36564429 36564429 C T COL8A2 Missense_Mutation p.A285T 0.31 tolerated(0.57) unknown(0) TCGA-G3-A7M6-01 1 37270816 37270816 G T GRIK3 Silent p.I779I 0.17 TCGA-G3-A7M6-01 1 52981223 52981223 A C ZCCHC11 Intron 0.33 TCGA-G3-A7M6-01 1 6185204 6185204 G A CHD5 Silent p.H1450H 0.08 TCGA-G3-A7M6-01 20 19560719 19560719 G C SLC24A3 Splice_Site p.X141_splice 0.54 TCGA-G3-A7M6-01 20 24646251 24646251 G A SYNDIG1 3'UTR 0.19 TCGA-G3-A7M6-01 20 24930124 24930124 G T CST7 5'UTR 0.27 TCGA-G3-A7M6-01 20 44512235 44512235 C T ZSWIM1 Missense_Mutation p.T335I 0.51 tolerated(0.28) benign(0.018) TCGA-G3-A7M6-01 21 35478352 35478352 C G SLC5A3 3'UTR 0.34 TCGA-G3-A7M6-01 21 45941865 45941865 G C TSPEAR Missense_Mutation p.F489L 0.34 deleterious(0) probably_damaging(0.936) TCGA-G3-A7M6-01 21 46645372 46645372 A G ADARB1 3'UTR 0.67 TCGA-G3-A7M6-01 22 16279260 16279260 T - POTEH Frame_Shift_Del p.K321Nfs*5 0.10 TCGA-G3-A7M6-01 22 31669449 31669449 G C LIMK2 Missense_Mutation p.D503H 0.25 deleterious(0) probably_damaging(0.999) TCGA-G3-A7M6-01 22 42273946 42273946 G T SREBF2 Missense_Mutation p.G527V 0.41 tolerated(0.22) benign(0.131) TCGA-G3-A7M6-01 2 112550033 112550033 G A ANAPC1 Missense_Mutation p.R1540C 0.37 deleterious(0) probably_damaging(0.994) TCGA-G3-A7M6-01 2 113949983 113949983 C T PSD4 Missense_Mutation p.S552F 0.24 tolerated(0.86) benign(0.001) TCGA-G3-A7M6-01 2 179615005 179615005 A T TTN Intron 0.36 TCGA-G3-A7M6-01 2 202082364 202082364 G C CASP10 Missense_Mutation p.R490T 0.32 deleterious(0.01) benign(0.32) TCGA-G3-A7M6-01 2 21252508 21252508 T C APOB Intron 0.40 TCGA-G3-A7M6-01 2 21252519 21252519 T C APOB Missense_Mutation p.K537E 0.36 benign(0.001) TCGA-G3-A7M6-01 2 32396397 32396397 T A SLC30A6 Missense_Mutation p.F15L 0.36 tolerated(0.57) benign(0.003) TCGA-G3-A7M6-01 2 42588393 42588393 G A COX7A2L 5'UTR 0.34 TCGA-G3-A7M6-01 3 10401666 10401666 T A ATP2B2 Missense_Mutation p.T601S 0.34 deleterious(0.02) possibly_damaging(0.848) TCGA-G3-A7M6-01 3 113775401 113775401 T G KIAA1407 5'UTR 0.60 TCGA-G3-A7M6-01 3 119263583 119263583 A T CD80 Missense_Mutation p.S78T 0.36 deleterious(0.03) benign(0.394) TCGA-G3-A7M6-01 3 130735202 130735202 C A ATP2C1 3'UTR 0.27 TCGA-G3-A7M6-01 3 168833394 168833394 G C MECOM Missense_Mutation p.P633A 0.36 tolerated(0.14) benign(0.016) TCGA-G3-A7M6-01 3 49933287 49933287 G A MST1R Silent p.I941I 0.28 TCGA-G3-A7M6-01 3 57356458 57356458 C T DNAH12 Silent p.T244T 0.31 TCGA-G3-A7M6-01 4 162431553 162431553 C A FSTL5 Nonsense_Mutation p.E446* 0.33 TCGA-G3-A7M6-01 4 49005828 49005828 T A CWH43 Missense_Mutation p.F293L 0.11 deleterious(0.05) possibly_damaging(0.723) TCGA-G3-A7M6-01 4 68543400 68543400 A G UBA6 Missense_Mutation p.Y132H 0.10 deleterious(0.03) possibly_damaging(0.665) TCGA-G3-A7M6-01 4 71657184 71657184 T A RUFY3 Intron 0.28 TCGA-G3-A7M6-01 4 90035650 90035650 C T TIGD2 Missense_Mutation p.L509F 0.44 deleterious(0.01) unknown(0) TCGA-G3-A7M6-01 5 140530762 140530762 G A PCDHB6 Silent p.E308E 0.14 TCGA-G3-A7M6-01 5 140700150 140700150 A C TAF7 5'UTR 0.62 TCGA-G3-A7M6-01 5 158135124 158135124 C T EBF1 Missense_Mutation p.S536N 0.46 tolerated_low_confidence(0.06) benign(0.009) TCGA-G3-A7M6-01 5 176931878 176931878 C T DOK3 Missense_Mutation p.A227T 0.10 tolerated(0.1) benign(0.405) TCGA-G3-A7M6-01 5 34005903 34005903 A C AMACR Missense_Mutation p.C117G 0.13 deleterious(0.01) benign(0) TCGA-G3-A7M6-01 5 427999 427999 G A AHRR Silent p.P284P 0.14 TCGA-G3-A7M6-01 5 54830484 54830484 G C PPAP2A 5'UTR 0.32 TCGA-G3-A7M6-01 5 77298849 77298849 T C AP3B1 Silent p.S1054S 0.39 TCGA-G3-A7M6-01 6 106967133 106967133 T C AIM1 Missense_Mutation p.F276L 0.36 deleterious(0) probably_damaging(0.997) TCGA-G3-A7M6-01 6 138655844 138655844 G C KIAA1244 Missense_Mutation p.G1954A 0.28 tolerated(0.2) probably_damaging(0.987) TCGA-G3-A7M6-01 6 15468865 15468865 A C JARID2 Missense_Mutation p.K196Q 0.35 tolerated(0.1) possibly_damaging(0.764) TCGA-G3-A7M6-01 6 160197285 160197285 C T ACAT2 Silent p.V246V 0.25 TCGA-G3-A7M6-01 6 2954826 2954826 C T SERPINB6 Missense_Mutation p.G144S 0.28 deleterious(0.01) possibly_damaging(0.464) TCGA-G3-A7M6-01 6 30861167 30861167 C A DDR1 Silent p.L438L 0.24 TCGA-G3-A7M6-01 6 31915210 31915210 C T CFB Silent p.H692H 0.42 TCGA-G3-A7M6-01 6 32138234 32138234 A G AGPAT1 Missense_Mutation p.S160P 0.39 deleterious(0.01) benign(0.435) TCGA-G3-A7M6-01 6 44137245 44137245 A G CAPN11 Missense_Mutation p.N106D 0.33 tolerated(0.08) benign(0.03) TCGA-G3-A7M6-01 6 56468670 56468670 T C DST Intron 0.27 TCGA-G3-A7M6-01 6 7576541 7576541 A G DSP Missense_Mutation p.E882G 0.35 probably_damaging(0.954) TCGA-G3-A7M6-01 7 27183054 27183054 C T HOXA5 Missense_Mutation p.R58H 0.20 tolerated(0.08) probably_damaging(0.985) TCGA-G3-A7M6-01 7 5331370 5331370 C A SLC29A4 Missense_Mutation p.D154E 0.44 tolerated(0.67) benign(0.008) TCGA-G3-A7M6-01 7 63796756 63796756 C G ZNF736 Silent p.V41V 0.22 TCGA-G3-A7M6-01 7 64167242 64167242 C A ZNF107 Missense_Mutation p.P187H 0.36 deleterious(0.01) benign(0.04) TCGA-G3-A7M6-01 8 12957573 12957573 G A DLC1 Missense_Mutation p.P758L 0.56 tolerated(0.12) probably_damaging(0.999) TCGA-G3-A7M6-01 8 31030549 31030549 G A WRN Nonsense_Mutation p.W1410* 0.47 TCGA-G3-A7M6-01 8 39506032 39506032 T A ADAM18 Missense_Mutation p.C406S 0.51 deleterious(0) probably_damaging(1) TCGA-G3-A7M6-01 8 53450993 53450993 G C FAM150A Intron 0.22 TCGA-G3-A7M6-01 8 66992665 66992665 G T DNAJC5B Silent p.L129L 0.23 TCGA-G3-A7M6-01 8 75227318 75227318 C G JPH1 Missense_Mutation p.G306A 0.19 deleterious(0) probably_damaging(0.999) TCGA-G3-A7M6-01 9 136031360 136031360 C T GBGT1 Intron 0.40 TCGA-G3-A7M6-01 9 15777776 15777776 A G CCDC171 Silent p.V950V 0.44 TCGA-G3-A7M6-01 9 17342344 17342344 G T CNTLN Missense_Mutation p.K596N 0.31 deleterious(0.01) benign(0.316) TCGA-G3-A7M6-01 9 35703574 35703574 T A TLN1 Missense_Mutation p.I2153L 0.12 deleterious(0) probably_damaging(0.943) TCGA-G3-A7M6-01 9 39086473 39086473 T A CNTNAP3 Intron 0.32 TCGA-G3-A7M6-01 X 100608970 100608970 G C BTK Silent p.V546V 0.28 TCGA-G3-A7M6-01 X 106173306 106173307 - C CLDN2 3'UTR 0.31 TCGA-G3-A7M6-01 X 114141284 114141284 C G HTR2C Missense_Mutation p.T228R 0.37 tolerated(0.1) probably_damaging(0.926) TCGA-G3-A7M6-01 X 118971720 118971720 C G UPF3B Missense_Mutation p.K434N 0.35 deleterious(0) probably_damaging(0.966) TCGA-G3-A7M6-01 X 12937389 12937389 A G TLR8 Missense_Mutation p.H77R 0.33 tolerated(0.63) benign(0.006) TCGA-G3-A7M6-01 X 133527969 133527969 A T PHF6 Silent p.A135A 0.40 TCGA-G3-A7M6-01 X 14027290 14027290 T A GEMIN8 Splice_Site p.X158_splice 0.29 TCGA-G3-A7M6-01 X 153715955 153715955 G T SLC10A3 Missense_Mutation p.A442D 0.30 deleterious(0) probably_damaging(0.999) TCGA-G3-A7M6-01 X 24513001 24513001 G C PDK3 Splice_Site p.X83_splice 0.31 TCGA-G3-A7M6-01 X 48895554 48895554 C T TFE3 Missense_Mutation p.G289E 0.35 tolerated(0.19) probably_damaging(0.931) TCGA-G3-A7M6-01 X 51639742 51639742 G A MAGED1 Missense_Mutation p.A387T 0.43 tolerated_low_confidence(0.06) unknown(0) TCGA-G3-A7M6-01 X 88008954 88008954 G A CPXCR1 Missense_Mutation p.C180Y 0.37 deleterious(0.04) probably_damaging(0.919) TCGA-G3-A7M7-01 10 104687150 104687150 C T CNNM2 Intron 0.37 TCGA-G3-A7M7-01 10 116417809 116417809 C A ABLIM1 Missense_Mutation p.A51S 0.31 tolerated_low_confidence(0.11) benign(0.061) TCGA-G3-A7M7-01 10 32150410 32150410 C G ARHGAP12 Silent p.G287G 0.24 TCGA-G3-A7M7-01 10 5948208 5948208 G T FBXO18 Missense_Mutation p.K173N 0.10 deleterious(0.03) probably_damaging(0.994) TCGA-G3-A7M7-01 10 74326487 74326487 C A MICU1 Missense_Mutation p.G22V 0.34 deleterious_low_confidence(0.01) benign(0.158) TCGA-G3-A7M7-01 10 89117886 89117886 A T NUTM2D 5'UTR 0.19 TCGA-G3-A7M7-01 10 96796969 96796969 A G CYP2C8 Silent p.D463D 0.26 TCGA-G3-A7M7-01 12 104645406 104645406 G A TXNRD1 Missense_Mutation p.G65S 0.20 tolerated(1) benign(0) TCGA-G3-A7M7-01 12 120031811 120031811 A G TMEM233 Missense_Mutation p.N53S 0.24 tolerated(0.08) probably_damaging(0.997) TCGA-G3-A7M7-01 12 133324833 133324833 G T ANKLE2 Missense_Mutation p.A311D 0.14 deleterious(0) probably_damaging(0.935) TCGA-G3-A7M7-01 12 45429822 45429822 G C DBX2 Missense_Mutation p.A160G 0.14 deleterious(0) benign(0.062) TCGA-G3-A7M7-01 12 53609161 53609161 T C RARG Missense_Mutation p.N131D 0.22 deleterious(0.04) possibly_damaging(0.843) TCGA-G3-A7M7-01 13 33628246 33628246 C T KL Nonsense_Mutation p.Q388* 0.08 TCGA-G3-A7M7-01 13 36747869 36747869 G A SOHLH2 Silent p.S397S 0.23 TCGA-G3-A7M7-01 14 21486186 21486186 C T NDRG2 Silent p.L303L 0.55 TCGA-G3-A7M7-01 14 75360077 75360077 C A DLST Missense_Mutation p.P208T 0.26 tolerated(0.05) benign(0.002) TCGA-G3-A7M7-01 15 40300225 40300225 C T EIF2AK4 Intron 0.30 TCGA-G3-A7M7-01 15 89385015 89385015 A G ACAN Missense_Mutation p.D225G 0.48 deleterious(0) unknown(0) TCGA-G3-A7M7-01 15 93510735 93510735 G C CHD2 Missense_Mutation p.Q727H 0.23 deleterious(0) possibly_damaging(0.64) TCGA-G3-A7M7-01 16 2880751 2880751 G T ZG16B Nonsense_Mutation p.E73* 0.27 TCGA-G3-A7M7-01 16 3830772 3830772 T C CREBBP Missense_Mutation p.H595R 0.23 probably_damaging(0.986) TCGA-G3-A7M7-01 16 48595832 48595832 C A N4BP1 Missense_Mutation p.G241V 0.29 deleterious(0.01) possibly_damaging(0.883) TCGA-G3-A7M7-01 17 38252734 38252734 C T NR1D1 Missense_Mutation p.R189H 0.29 deleterious(0) probably_damaging(0.999) TCGA-G3-A7M7-01 17 38520523 38520523 T G CTD-2267D19.3 3'UTR 0.33 TCGA-G3-A7M7-01 17 39165017 39165017 C A KRTAP3-1 3'UTR 0.36 TCGA-G3-A7M7-01 17 39740122 39740122 C T KRT14 Missense_Mutation p.D273N 0.26 tolerated(0.06) possibly_damaging(0.576) TCGA-G3-A7M7-01 17 56437569 56437569 C T RNF43 Missense_Mutation p.C298Y 0.17 deleterious(0) probably_damaging(1) TCGA-G3-A7M7-01 17 56599039 56599039 G A SEPT4 Intron 0.24 TCGA-G3-A7M7-01 17 73236489 73236489 G C GGA3 Silent p.L399L 0.27 TCGA-G3-A7M7-01 17 8633306 8633306 C G CCDC42 3'UTR 0.30 TCGA-G3-A7M7-01 18 14808726 14808726 G A ANKRD30B Intron 0.38 TCGA-G3-A7M7-01 18 51057047 51057047 T C DCC 3'UTR 0.13 TCGA-G3-A7M7-01 19 12856230 12856230 G T ASNA1 Nonsense_Mutation p.E117* 0.25 TCGA-G3-A7M7-01 19 23844915 23844915 C G ZNF675 Splice_Site p.X76_splice 0.26 TCGA-G3-A7M7-01 19 37004875 37004875 C A ZNF260 3'UTR 0.36 TCGA-G3-A7M7-01 19 49979435 49979435 G A FLT3LG Missense_Mutation p.V60M 0.19 tolerated(0.11) possibly_damaging(0.883) TCGA-G3-A7M7-01 19 52618825 52618825 C A ZNF616 Missense_Mutation p.S531I 0.16 tolerated(0.11) possibly_damaging(0.855) TCGA-G3-A7M7-01 19 54600300 54600300 G T OSCAR Silent p.L78L 0.12 TCGA-G3-A7M7-01 1 107601311 107601311 T C PRMT6 3'UTR 0.28 TCGA-G3-A7M7-01 1 11736162 11736162 A T MAD2L2 Missense_Mutation p.L123H 0.29 deleterious(0) probably_damaging(0.999) TCGA-G3-A7M7-01 1 120906208 120906208 T A RP11-439A17.4 5'Flank 0.33 TCGA-G3-A7M7-01 1 14105806 14105806 C T PRDM2 Missense_Mutation p.H506Y 0.32 probably_damaging(1) TCGA-G3-A7M7-01 1 144882490 144882490 G A PDE4DIP Nonsense_Mutation p.Q1177* 0.10 TCGA-G3-A7M7-01 1 152286392 152286392 A G FLG Missense_Mutation p.S324P 0.29 probably_damaging(0.987) TCGA-G3-A7M7-01 1 249211312 249211312 C T PGBD2 Nonsense_Mutation p.Q177* 0.26 TCGA-G3-A7M7-01 1 86554879 86554879 G A COL24A1 Missense_Mutation p.P562L 0.23 tolerated(0.92) probably_damaging(0.932) TCGA-G3-A7M7-01 20 17505501 17505501 G T BFSP1 Missense_Mutation p.L144I 0.07 deleterious(0.01) probably_damaging(0.957) TCGA-G3-A7M7-01 20 20392779 20392779 C A RALGAPA2 Missense_Mutation p.A1837S 0.08 deleterious(0.01) benign(0.37) TCGA-G3-A7M7-01 20 57484420 57484420 C T GNAS Missense_Mutation p.R844C 0.37 deleterious(0.01) probably_damaging(1) TCGA-G3-A7M7-01 20 62196722 62196722 G T HELZ2 Silent p.S1151S 0.36 TCGA-G3-A7M7-01 21 43547837 43547837 G T UMODL1 Missense_Mutation p.A1324S 0.09 deleterious(0) probably_damaging(0.997) TCGA-G3-A7M7-01 22 20307214 20307214 G A DGCR6L Silent p.L73L 0.15 TCGA-G3-A7M7-01 22 22049306 22049306 G A PPIL2 Silent p.Q471Q 0.56 TCGA-G3-A7M7-01 22 26747127 26747127 G T SEZ6L Silent p.V839V 0.12 TCGA-G3-A7M7-01 22 46501301 46501301 G A FLJ27365 Intron 0.16 TCGA-G3-A7M7-01 2 113955466 113955466 G T PSD4 Missense_Mutation p.W867L 0.25 deleterious(0.01) probably_damaging(0.94) TCGA-G3-A7M7-01 2 1481014 1481014 G T TPO Missense_Mutation p.A326S 0.27 deleterious(0.01) probably_damaging(1) TCGA-G3-A7M7-01 2 1638057 1638057 A G PXDN Silent p.P1453P 0.25 TCGA-G3-A7M7-01 2 187713759 187713759 G C ZSWIM2 Silent p.L33L 0.27 TCGA-G3-A7M7-01 2 197183957 197183957 C T HECW2 Missense_Mutation p.G553S 0.19 tolerated_low_confidence(0.39) benign(0.001) TCGA-G3-A7M7-01 2 197595663 197595663 A C CCDC150 Silent p.S1021S 0.21 TCGA-G3-A7M7-01 2 215835096 215835096 G A ABCA12 Missense_Mutation p.P1864L 0.05 deleterious(0) probably_damaging(0.996) TCGA-G3-A7M7-01 2 223494886 223494886 A G FARSB Missense_Mutation p.I265T 0.31 deleterious(0.04) benign(0.292) TCGA-G3-A7M7-01 2 234839334 234839334 G A TRPM8 Missense_Mutation p.A47T 0.23 deleterious(0.01) benign(0.001) TCGA-G3-A7M7-01 2 241401973 241401973 A T GPC1 Missense_Mutation p.S231C 0.24 deleterious(0.05) possibly_damaging(0.84) TCGA-G3-A7M7-01 2 24962370 24962370 A C NCOA1 Silent p.R1091R 0.16 TCGA-G3-A7M7-01 2 48950602 48950602 C A LHCGR Missense_Mutation p.V177L 0.19 tolerated(1) benign(0.004) TCGA-G3-A7M7-01 2 5838606 5838606 C A SOX11 3'UTR 0.26 TCGA-G3-A7M7-01 2 85097547 85097547 G A TRABD2A Silent p.A157A 0.39 TCGA-G3-A7M7-01 3 113005642 113005642 C A BOC Missense_Mutation p.P1093H 0.35 tolerated_low_confidence(0.13) possibly_damaging(0.738) TCGA-G3-A7M7-01 3 142275251 142275251 A C ATR Silent p.S684S 0.23 TCGA-G3-A7M7-01 3 153840804 153840804 G T ARHGEF26 Missense_Mutation p.Q341H 0.09 deleterious(0.03) benign(0.414) TCGA-G3-A7M7-01 3 160960387 160960387 C T NMD3 Silent p.C321C 0.18 TCGA-G3-A7M7-01 4 177071281 177071281 A T WDR17 Missense_Mutation p.N736I 0.27 deleterious(0.01) possibly_damaging(0.775) TCGA-G3-A7M7-01 4 6087184 6087184 G C JAKMIP1 Missense_Mutation p.P266R 0.31 tolerated(0.05) possibly_damaging(0.452) TCGA-G3-A7M7-01 5 140516880 140516880 G C PCDHB5 Missense_Mutation p.E622Q 0.40 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-G3-A7M7-01 5 153429404 153429404 A G MFAP3 Missense_Mutation p.N41S 0.25 tolerated_low_confidence(0.07) probably_damaging(0.985) TCGA-G3-A7M7-01 6 152415519 152415519 G A ESR1 Splice_Site p.X457_splice 0.26 TCGA-G3-A7M7-01 6 167550438 167550438 C T CCR6 Silent p.T240T 0.16 TCGA-G3-A7M7-01 6 31079732 31079732 A T C6orf15 Missense_Mutation p.L135H 0.14 deleterious(0.01) benign(0.418) TCGA-G3-A7M7-01 6 31935834 31935834 A G SKIV2L Missense_Mutation p.S945G 0.14 tolerated(0.36) benign(0.049) TCGA-G3-A7M7-01 6 42906570 42906570 A G CNPY3 3'UTR 0.18 TCGA-G3-A7M7-01 7 123303229 123303229 G A LMOD2 Missense_Mutation p.R530Q 0.06 deleterious(0) possibly_damaging(0.826) TCGA-G3-A7M7-01 7 139258131 139258131 T C HIPK2 Missense_Mutation p.I1047V 0.33 tolerated(0.58) benign(0.001) TCGA-G3-A7M7-01 7 143657370 143657370 T C OR2F1 Missense_Mutation p.F103L 0.27 tolerated(0.27) benign(0.003) TCGA-G3-A7M7-01 7 92733863 92733863 T A SAMD9 Missense_Mutation p.E516D 0.35 tolerated(0.53) benign(0.019) TCGA-G3-A7M7-01 8 133584681 133584681 A G LRRC6 Missense_Mutation p.F425S 0.14 tolerated(0.19) benign(0.007) TCGA-G3-A7M7-01 8 146076517 146076517 C T COMMD5 Silent p.Q69Q 0.14 TCGA-G3-A7M7-01 8 27279849 27279849 C A PTK2B Missense_Mutation p.A167D 0.19 deleterious(0) probably_damaging(0.976) TCGA-G3-A7M7-01 8 42977499 42977499 A G POMK Missense_Mutation p.R178G 0.48 deleterious(0) probably_damaging(0.998) TCGA-G3-A7M7-01 8 62475310 62475310 T A ASPH Missense_Mutation p.Y477F 0.13 tolerated(0.21) benign(0.042) TCGA-G3-A7M7-01 9 114348335 114348335 G A PTGR1 Missense_Mutation p.T107I 0.25 tolerated(0.21) benign(0.023) TCGA-G3-A7M7-01 9 131295815 131295815 G A GLE1 Missense_Mutation p.D446N 0.22 tolerated(0.1) benign(0.363) TCGA-G3-A7M7-01 9 18639393 18639393 C T ADAMTSL1 Missense_Mutation p.A273V 0.36 deleterious(0) possibly_damaging(0.849) TCGA-G3-A7M7-01 9 21239523 21239523 C A IFNA14 Missense_Mutation p.D138Y 0.36 deleterious(0.02) probably_damaging(0.997) TCGA-G3-A7M7-01 9 34310818 34310818 T C KIF24 Missense_Mutation p.Y176C 0.25 tolerated(0.1) possibly_damaging(0.571) TCGA-G3-A7M7-01 9 43915846 43915846 G T CNTNAP3B Nonsense_Mutation p.E1232* 0.10 TCGA-G3-A7M7-01 9 43915847 43915847 A T CNTNAP3B Missense_Mutation p.E1232V 0.10 deleterious(0.02) possibly_damaging(0.477) TCGA-G3-A7M7-01 9 95738622 95738622 C A FGD3 Silent p.S28S 0.20 TCGA-G3-A7M7-01 X 135862939 135862939 G T ARHGEF6 Missense_Mutation p.L35M 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-G3-A7M7-01 X 153247691 153247691 G A TMEM187 Missense_Mutation p.V60M 0.62 deleterious(0) possibly_damaging(0.798) TCGA-G3-A7M8-01 11 62286773 62286773 T A AHNAK Missense_Mutation p.K5039I 0.22 probably_damaging(1) TCGA-G3-A7M8-01 11 6501684 6501684 C T ARFIP2 Intron 0.28 TCGA-G3-A7M8-01 11 94352999 94352999 C A PIWIL4 Missense_Mutation p.Q748K 0.35 tolerated(0.15) benign(0.022) TCGA-G3-A7M8-01 12 101679570 101679570 T C UTP20 Silent p.N79N 0.36 TCGA-G3-A7M8-01 12 102140857 102140857 A T GNPTAB 3'UTR 0.14 TCGA-G3-A7M8-01 14 52735240 52735240 G A PTGDR Silent p.P236P 0.26 TCGA-G3-A7M8-01 15 34394935 34394935 A C PGBD4 Missense_Mutation p.D68A 0.40 tolerated_low_confidence(0.93) benign(0) TCGA-G3-A7M8-01 15 71329548 71329548 C T LRRC49 Silent p.S583S 0.09 TCGA-G3-A7M8-01 16 2514087 2514087 G A C16orf59 Missense_Mutation p.G338R 0.09 tolerated(1) benign(0) TCGA-G3-A7M8-01 17 46688035 46688035 C A HOXB7 Silent p.P82P 0.25 TCGA-G3-A7M8-01 17 64210603 64210603 T G APOH Missense_Mutation p.D317A 0.07 deleterious(0) probably_damaging(0.995) TCGA-G3-A7M8-01 17 8139600 8139600 C T CTC1 Missense_Mutation p.E285K 0.21 tolerated(0.61) benign(0.311) TCGA-G3-A7M8-01 19 14674899 14674899 A G TECR Missense_Mutation p.T125A 0.09 tolerated(0.51) benign(0.001) TCGA-G3-A7M8-01 19 23557476 23557476 C A ZNF91 Missense_Mutation p.V41L 0.36 deleterious(0) benign(0.009) TCGA-G3-A7M8-01 19 3532454 3532454 C T FZR1 Nonsense_Mutation p.Q350* 0.35 TCGA-G3-A7M8-01 19 7120659 7120659 C T INSR Missense_Mutation p.G1211R 0.41 deleterious(0) probably_damaging(1) TCGA-G3-A7M8-01 1 120839624 120839624 G A FAM72B 5'UTR 0.09 TCGA-G3-A7M8-01 1 176709306 176709306 C T PAPPA2 Silent p.D1375D 0.11 TCGA-G3-A7M8-01 1 197071915 197071915 C G ASPM Missense_Mutation p.G2156R 0.31 tolerated(0.12) possibly_damaging(0.608) TCGA-G3-A7M8-01 1 198288662 198288662 A T NEK7 3'UTR 0.10 TCGA-G3-A7M8-01 1 204214797 204214797 C A PLEKHA6 Nonsense_Mutation p.E660* 0.29 TCGA-G3-A7M8-01 2 113832387 113832387 C T IL1F10 Missense_Mutation p.A69V 0.34 deleterious(0) possibly_damaging(0.855) TCGA-G3-A7M8-01 2 21230621 21230625 GAAAA - APOB Frame_Shift_Del p.F3039Sfs*5 0.29 TCGA-G3-A7M8-01 2 241979571 241979571 C T SNED1 Silent p.C375C 0.12 TCGA-G3-A7M8-01 2 44209519 44209519 A G LRPPRC Silent p.I68I 0.06 TCGA-G3-A7M8-01 2 60687855 60687855 C T BCL11A Missense_Mutation p.G731D 0.28 deleterious(0.01) probably_damaging(0.931) TCGA-G3-A7M8-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.31 tolerated(0.11) possibly_damaging(0.529) TCGA-G3-A7M8-01 3 49449740 49449740 A C TCTA 5'UTR 0.36 TCGA-G3-A7M8-01 3 52741737 52741737 A G SPCS1 Missense_Mutation p.H140R 0.07 tolerated(0.06) probably_damaging(0.978) TCGA-G3-A7M8-01 4 158242731 158242731 G T GRIA2 Missense_Mutation p.A288S 0.28 tolerated(0.47) benign(0.07) TCGA-G3-A7M8-01 5 122152993 122152993 C G SNX2 Missense_Mutation p.Q311E 0.08 tolerated(0.06) benign(0.174) TCGA-G3-A7M8-01 5 6602579 6602579 A G NSUN2 Silent p.D664D 0.36 TCGA-G3-A7M8-01 6 123319206 123319206 G A CLVS2 Missense_Mutation p.G95D 0.07 tolerated(0.2) benign(0.04) TCGA-G3-A7M8-01 7 48273680 48273680 A T ABCA13 Nonsense_Mutation p.K277* 0.10 TCGA-G3-A7M8-01 8 9578010 9578010 A G TNKS Missense_Mutation p.T626A 0.27 tolerated(0.07) probably_damaging(0.983) TCGA-G3-A7M8-01 X 118281508 118281508 T C KIAA1210 Missense_Mutation p.D113G 0.14 tolerated_low_confidence(0.27) benign(0) TCGA-G3-A7M9-01 10 102584502 102584502 G A PAX2 Silent p.V362V 0.40 TCGA-G3-A7M9-01 10 102782138 102782138 C A PDZD7 Missense_Mutation p.D183Y 0.50 deleterious(0) probably_damaging(1) TCGA-G3-A7M9-01 10 108459041 108459041 G A SORCS1 Silent p.F448F 0.38 TCGA-G3-A7M9-01 10 13699408 13699408 G T FRMD4A Missense_Mutation p.S727R 0.41 tolerated(0.29) probably_damaging(0.99) TCGA-G3-A7M9-01 10 16870834 16870834 G T CUBN Missense_Mutation p.S3578R 0.10 tolerated(0.1) benign(0.033) TCGA-G3-A7M9-01 10 17202313 17202313 A G TRDMT1 Silent p.S150S 0.30 TCGA-G3-A7M9-01 10 26462717 26462717 C - MYO3A Frame_Shift_Del p.T1176Pfs*17 0.29 TCGA-G3-A7M9-01 10 375432 375432 A G DIP2C Missense_Mutation p.S1232P 0.44 deleterious(0) probably_damaging(0.932) TCGA-G3-A7M9-01 10 55568699 55568699 G T PCDH15 Missense_Mutation p.A638D 0.49 deleterious_low_confidence(0) unknown(0) TCGA-G3-A7M9-01 10 61028335 61028335 A G FAM13C Missense_Mutation p.F307S 0.20 deleterious(0) probably_damaging(0.999) TCGA-G3-A7M9-01 10 74912126 74912126 T G ECD Silent p.P279P 0.20 TCGA-G3-A7M9-01 10 77795792 77795792 G A C10orf11 Missense_Mutation p.R25K 0.43 tolerated(0.96) benign(0.001) TCGA-G3-A7M9-01 10 93136 93136 G C TUBB8 Missense_Mutation p.T399R 0.38 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-G3-A7M9-01 11 118422512 118422512 G T IFT46 Missense_Mutation p.L272I 0.09 tolerated(0.13) possibly_damaging(0.853) TCGA-G3-A7M9-01 11 51515655 51515655 G T OR4C46 Missense_Mutation p.C125F 0.52 deleterious_low_confidence(0) benign(0.167) TCGA-G3-A7M9-01 11 57080487 57080489 CCC - TNKS1BP1 In_Frame_Del p.G558del 0.31 TCGA-G3-A7M9-01 11 5717433 5717433 A C TRIM22 5'UTR 0.23 TCGA-G3-A7M9-01 11 71943737 71943737 G T INPPL1 Missense_Mutation p.D594Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-G3-A7M9-01 12 100594687 100594687 G A ACTR6 Missense_Mutation p.E20K 0.29 tolerated(0.12) benign(0.129) TCGA-G3-A7M9-01 12 111885820 111885820 T C SH2B3 Missense_Mutation p.L481P 0.28 deleterious(0) probably_damaging(0.949) TCGA-G3-A7M9-01 12 125834213 125834213 C T TMEM132B Missense_Mutation p.P90S 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-G3-A7M9-01 12 132611150 132611150 C G RP13-977J11.5 RNA 0.08 TCGA-G3-A7M9-01 12 20893142 20893145 GGAA - SLCO1C1 Frame_Shift_Del p.G525Lfs*12 0.36 TCGA-G3-A7M9-01 12 27787982 27787982 A T PPFIBP1 Missense_Mutation p.E68D 0.36 tolerated(0.27) probably_damaging(0.983) TCGA-G3-A7M9-01 12 30816503 30816503 C A IPO8 Missense_Mutation p.S505I 0.10 deleterious(0.02) benign(0.067) TCGA-G3-A7M9-01 12 30816574 30816574 A C IPO8 Silent p.L481L 0.44 TCGA-G3-A7M9-01 12 64814173 64814173 C A XPOT Missense_Mutation p.L239I 0.34 tolerated(0.15) possibly_damaging(0.678) TCGA-G3-A7M9-01 12 85277689 85277689 G T SLC6A15 Silent p.A235A 0.43 TCGA-G3-A7M9-01 12 8994020 8994020 T A A2ML1 Missense_Mutation p.V379E 0.37 deleterious(0) possibly_damaging(0.643) TCGA-G3-A7M9-01 13 92797096 92797096 G T GPC5 Missense_Mutation p.R472I 0.31 tolerated(0.05) benign(0.043) TCGA-G3-A7M9-01 14 102446826 102446826 T G DYNC1H1 Silent p.T300T 0.38 TCGA-G3-A7M9-01 14 105398614 105398614 G T PLD4 Missense_Mutation p.V415L 0.39 tolerated(0.07) benign(0.12) TCGA-G3-A7M9-01 14 106805517 106805517 C G IGHV4-31 Splice_Site p.X16_splice 0.22 TCGA-G3-A7M9-01 14 23902875 23902875 G T MYH7 Silent p.R23R 0.08 TCGA-G3-A7M9-01 14 64593080 64593089 TAAAAAATTG - SYNE2 Frame_Shift_Del p.K4531Lfs*5 0.37 TCGA-G3-A7M9-01 15 33895514 33895514 G T RYR3 Missense_Mutation p.V705F 0.71 probably_damaging(1) TCGA-G3-A7M9-01 15 66729188 66729188 G A MAP2K1 Silent p.A132A 0.60 TCGA-G3-A7M9-01 15 67793247 67793247 T C IQCH 3'UTR 0.77 TCGA-G3-A7M9-01 15 80762629 80762629 A G ARNT2 Missense_Mutation p.M89V 0.37 deleterious(0) benign(0.072) TCGA-G3-A7M9-01 16 23722332 23722332 G T ERN2 Missense_Mutation p.T82N 0.13 deleterious_low_confidence(0.01) benign(0.299) TCGA-G3-A7M9-01 16 30116234 30116234 G T GDPD3 Missense_Mutation p.H306N 0.16 tolerated(0.45) benign(0.002) TCGA-G3-A7M9-01 16 71888817 71888817 G C ATXN1L 3'UTR 0.73 TCGA-G3-A7M9-01 16 81077518 81077518 T C ATMIN Missense_Mutation p.I472T 0.73 deleterious(0.04) possibly_damaging(0.703) TCGA-G3-A7M9-01 16 84444352 84444352 G T ATP2C2 Missense_Mutation p.V166F 0.50 deleterious(0.01) possibly_damaging(0.905) TCGA-G3-A7M9-01 17 15522794 15522794 G A CDRT1 Silent p.A11A 0.38 TCGA-G3-A7M9-01 17 26727867 26727867 G A SARM1 3'UTR 0.33 TCGA-G3-A7M9-01 17 29326075 29326075 T C RNF135 Missense_Mutation p.F389L 0.08 deleterious(0) probably_damaging(1) TCGA-G3-A7M9-01 17 39534231 39534231 A T KRT34 3'UTR 0.21 TCGA-G3-A7M9-01 17 47587941 47587941 G C NGFR Missense_Mutation p.G246R 0.48 deleterious(0.02) benign(0.347) TCGA-G3-A7M9-01 17 48940660 48940661 - GC TOB1 Frame_Shift_Ins p.P240Rfs*84 0.21 TCGA-G3-A7M9-01 17 67287403 67287403 C T ABCA5 Silent p.K520K 0.31 TCGA-G3-A7M9-01 17 73723340 73723340 G T ITGB4 Missense_Mutation p.A49S 0.30 tolerated(0.33) probably_damaging(1) TCGA-G3-A7M9-01 17 74382080 74382096 GGCGTGCTCCCGCGGCC - SPHK1 Frame_Shift_Del p.G95Lfs*30 0.42 TCGA-G3-A7M9-01 17 74387235 74387235 G T UBE2O Missense_Mutation p.A1223E 0.08 tolerated_low_confidence(0.19) benign(0.051) TCGA-G3-A7M9-01 17 75303253 75303253 G C SEPT9 Missense_Mutation p.R17P 0.52 deleterious_low_confidence(0.04) possibly_damaging(0.453) TCGA-G3-A7M9-01 17 7578264 7578270 GATAAGA - TP53 Frame_Shift_Del p.L194Efs*51 0.46 TCGA-G3-A7M9-01 17 77808471 77808471 G A CBX4 Missense_Mutation p.P324S 0.44 tolerated(1) benign(0.444) TCGA-G3-A7M9-01 18 9914271 9914271 G T VAPA Silent p.G6G 0.21 TCGA-G3-A7M9-01 19 38960151 38960151 G A RYR1 Missense_Mutation p.E1255K 0.71 benign(0.171) TCGA-G3-A7M9-01 19 49121059 49121059 G T RPL18 Missense_Mutation p.L27M 0.63 deleterious(0.02) possibly_damaging(0.868) TCGA-G3-A7M9-01 19 53303883 53303883 A G ZNF28 Silent p.H405H 0.65 TCGA-G3-A7M9-01 19 53855612 53855612 G - ZNF845 Frame_Shift_Del p.Q563Sfs*13 0.31 TCGA-G3-A7M9-01 19 54966690 54966690 G A LENG8 Silent p.A323A 0.35 TCGA-G3-A7M9-01 19 56704398 56704398 T A ZSCAN5B Silent p.S8S 0.17 TCGA-G3-A7M9-01 19 56896171 56896171 C T ZNF582 Silent p.G205G 0.22 TCGA-G3-A7M9-01 19 6750013 6750022 AGCCCCAGAT - TRIP10 Frame_Shift_Del p.E388Afs*5 0.33 TCGA-G3-A7M9-01 19 6833726 6833726 C A VAV1 Missense_Mutation p.F571L 0.54 tolerated(0.66) benign(0) TCGA-G3-A7M9-01 1 110655817 110655817 G A UBL4B 3'UTR 0.26 TCGA-G3-A7M9-01 1 120165473 120165473 C A ZNF697 Missense_Mutation p.C498F 0.45 deleterious(0) probably_damaging(0.999) TCGA-G3-A7M9-01 1 149649196 149649196 T G RP11-353N4.5 RNA 0.35 TCGA-G3-A7M9-01 1 149755799 149755799 T A FCGR1A Missense_Mutation p.L98Q 0.33 deleterious(0) probably_damaging(1) TCGA-G3-A7M9-01 1 151502577 151502577 C T CGN Silent p.L767L 0.13 TCGA-G3-A7M9-01 1 152944518 152944518 A C SPRR4 Missense_Mutation p.K51T 0.09 deleterious_low_confidence(0.04) unknown(0) TCGA-G3-A7M9-01 1 154067567 154067567 C G NUP210L Silent p.G677G 0.36 TCGA-G3-A7M9-01 1 156843727 156843727 T C NTRK1 Missense_Mutation p.F385L 0.33 tolerated(0.25) probably_damaging(0.986) TCGA-G3-A7M9-01 1 157062380 157062380 T A ETV3L 3'UTR 0.53 TCGA-G3-A7M9-01 1 158368833 158368833 C A OR10T2 Missense_Mutation p.G142W 0.36 deleterious(0) probably_damaging(0.995) TCGA-G3-A7M9-01 1 200945972 200945972 G A KIF21B Silent p.L1459L 0.38 TCGA-G3-A7M9-01 1 205632141 205632141 G T SLC45A3 Missense_Mutation p.L260M 0.11 tolerated(0.06) probably_damaging(0.979) TCGA-G3-A7M9-01 1 226923399 226923399 T G ITPKB Silent p.G587G 0.41 TCGA-G3-A7M9-01 1 228496800 228496800 C T OBSCN Missense_Mutation p.A5204V 0.41 benign(0.181) TCGA-G3-A7M9-01 1 237711846 237711846 G T RYR2 Missense_Mutation p.A1008S 0.28 probably_damaging(0.951) TCGA-G3-A7M9-01 1 94354618 94354618 C T GCLM Silent p.S251S 0.39 TCGA-G3-A7M9-01 20 20350998 20350998 C T INSM1 3'UTR 0.32 TCGA-G3-A7M9-01 20 20350999 20350999 A T INSM1 3'UTR 0.32 TCGA-G3-A7M9-01 21 45970816 45970816 A T KRTAP10-2 Missense_Mutation p.S176T 0.38 tolerated(0.08) unknown(0) TCGA-G3-A7M9-01 22 24179889 24179889 G T DERL3 Silent p.G160G 0.17 TCGA-G3-A7M9-01 22 36689429 36689429 C T MYH9 Silent p.E1347E 0.25 TCGA-G3-A7M9-01 22 43575637 43575637 G A TTLL12 Silent p.A276A 0.44 TCGA-G3-A7M9-01 22 44893625 44893625 C T LDOC1L 5'UTR 0.27 TCGA-G3-A7M9-01 22 50682494 50682494 T C TUBGCP6 Missense_Mutation p.Y132C 0.28 deleterious(0) possibly_damaging(0.751) TCGA-G3-A7M9-01 2 101911551 101911551 T C RNF149 Missense_Mutation p.I185V 0.22 tolerated(0.13) probably_damaging(0.994) TCGA-G3-A7M9-01 2 107423042 107423042 T C ST6GAL2 3'UTR 0.45 TCGA-G3-A7M9-01 2 11716535 11716535 T C GREB1 Missense_Mutation p.F171L 0.23 deleterious(0.02) probably_damaging(0.99) TCGA-G3-A7M9-01 2 120005515 120005515 C A STEAP3 Silent p.P261P 0.47 TCGA-G3-A7M9-01 2 144314011 144314011 C A ARHGAP15 Silent p.G320G 0.49 TCGA-G3-A7M9-01 2 164468244 164468244 C G FIGN Missense_Mutation p.R33P 0.32 tolerated(0.22) probably_damaging(0.989) TCGA-G3-A7M9-01 2 216256381 216256381 G T FN1 Missense_Mutation p.P1409H 0.31 deleterious(0.03) probably_damaging(0.951) TCGA-G3-A7M9-01 2 220041627 220041627 C G CNPPD1 Intron 0.55 TCGA-G3-A7M9-01 2 233322924 233322924 C T ALPI Intron 0.43 TCGA-G3-A7M9-01 2 25016290 25016290 C G CENPO 5'UTR 0.13 TCGA-G3-A7M9-01 2 27260450 27260450 G A TMEM214 Silent p.Q344Q 0.43 TCGA-G3-A7M9-01 2 32716623 32716623 C A BIRC6 Missense_Mutation p.Q2780K 0.08 benign(0.152) TCGA-G3-A7M9-01 2 97751541 97751541 G A FAHD2B Missense_Mutation p.R194C 0.48 deleterious(0) probably_damaging(0.989) TCGA-G3-A7M9-01 3 111764772 111764772 G C TMPRSS7 Missense_Mutation p.D112H 0.31 deleterious(0) probably_damaging(1) TCGA-G3-A7M9-01 3 133465232 133465232 G C TF 5'UTR 0.58 TCGA-G3-A7M9-01 3 134076549 134076549 A C AMOTL2 Nonstop_Mutation p.*781Gext*43 0.14 TCGA-G3-A7M9-01 3 157160183 157160183 G A PTX3 Missense_Mutation p.M187I 0.31 deleterious(0) probably_damaging(0.98) TCGA-G3-A7M9-01 3 164737493 164737493 G T SI Missense_Mutation p.P1107Q 0.30 deleterious(0) probably_damaging(0.992) TCGA-G3-A7M9-01 3 172224254 172224254 A C TNFSF10 3'UTR 0.37 TCGA-G3-A7M9-01 3 189526152 189526152 C T TP63 Missense_Mutation p.A139V 0.25 deleterious(0.01) benign(0.116) TCGA-G3-A7M9-01 3 46755757 46755757 C A PRSS50 Missense_Mutation p.K235N 0.50 deleterious(0.01) probably_damaging(0.928) TCGA-G3-A7M9-01 3 47040281 47040281 A G NBEAL2 Missense_Mutation p.E1099G 0.28 tolerated(0.08) possibly_damaging(0.573) TCGA-G3-A7M9-01 3 47164729 47164729 T C SETD2 Missense_Mutation p.K466R 0.47 tolerated_low_confidence(1) benign(0.005) TCGA-G3-A7M9-01 3 52547186 52547186 G T STAB1 Missense_Mutation p.A1067S 0.28 tolerated(0.56) benign(0.042) TCGA-G3-A7M9-01 3 53851908 53851908 T C CHDH Missense_Mutation p.I561V 0.43 tolerated(0.06) benign(0.074) TCGA-G3-A7M9-01 3 9759770 9759770 A G CPNE9 Missense_Mutation p.Y330C 0.37 deleterious(0) probably_damaging(0.992) TCGA-G3-A7M9-01 4 110682850 110682850 T A CFI Splice_Site p.X161_splice 0.50 TCGA-G3-A7M9-01 4 164272303 164272303 C T NPY5R Missense_Mutation p.T293I 0.57 tolerated(0.05) benign(0.159) TCGA-G3-A7M9-01 4 185941802 185941802 C T HELT Missense_Mutation p.A287V 0.86 tolerated(0.08) benign(0.222) TCGA-G3-A7M9-01 4 44693809 44693809 T C GUF1 Missense_Mutation p.Y536H 0.38 deleterious(0) probably_damaging(0.979) TCGA-G3-A7M9-01 4 47850329 47850329 T A NFXL1 Nonsense_Mutation p.R863* 0.31 TCGA-G3-A7M9-01 4 6303650 6303650 A C WFS1 Missense_Mutation p.T710P 0.32 deleterious(0.01) probably_damaging(0.981) TCGA-G3-A7M9-01 4 79295351 79295351 G T FRAS1 Missense_Mutation p.V1033F 0.61 possibly_damaging(0.835) TCGA-G3-A7M9-01 4 88535262 88535262 A G DSPP Missense_Mutation p.N483S 0.66 possibly_damaging(0.781) TCGA-G3-A7M9-01 5 101813521 101813521 C T SLCO6A1 Missense_Mutation p.G221S 0.70 tolerated(0.75) benign(0.004) TCGA-G3-A7M9-01 5 115323605 115323605 G C AQPEP Missense_Mutation p.L358F 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-G3-A7M9-01 5 140215989 140215989 A T PCDHA7 Missense_Mutation p.Q674L 0.59 deleterious_low_confidence(0.02) benign(0.037) TCGA-G3-A7M9-01 5 140555938 140555938 T C PCDHB7 3'UTR 0.17 TCGA-G3-A7M9-01 5 140573688 140573688 C A PCDHB10 Nonsense_Mutation p.Y521* 0.28 TCGA-G3-A7M9-01 5 141242953 141242953 C A PCDH1 Missense_Mutation p.Q981H 0.09 tolerated(0.38) probably_damaging(0.999) TCGA-G3-A7M9-01 5 179225293 179225293 G A MGAT4B Intron 0.50 TCGA-G3-A7M9-01 5 42806794 42806794 T C SEPP1 Intron 0.50 TCGA-G3-A7M9-01 5 89948314 89948314 C T GPR98 Missense_Mutation p.H1190Y 0.54 benign(0.053) TCGA-G3-A7M9-01 6 101166124 101166124 C T ASCC3 Missense_Mutation p.E636K 0.39 deleterious(0) probably_damaging(0.993) TCGA-G3-A7M9-01 6 132966704 132966704 T C TAAR1 Missense_Mutation p.S147G 0.34 tolerated(0.1) benign(0.327) TCGA-G3-A7M9-01 6 169637837 169637837 C T THBS2 Missense_Mutation p.V395M 0.28 deleterious(0.01) possibly_damaging(0.836) TCGA-G3-A7M9-01 6 30866689 30866689 G T DDR1 Missense_Mutation p.V832L 0.39 deleterious(0) benign(0.39) TCGA-G3-A7M9-01 6 33639857 33639857 T C ITPR3 Missense_Mutation p.M927T 0.36 deleterious(0.02) possibly_damaging(0.811) TCGA-G3-A7M9-01 6 46660241 46660241 A T TDRD6 Missense_Mutation p.E1459V 0.33 deleterious(0) probably_damaging(0.951) TCGA-G3-A7M9-01 6 49427174 49427174 T A MUT Missense_Mutation p.L2F 0.41 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-G3-A7M9-01 6 5000046 5000050 ATTTC - RPP40 Frame_Shift_Del p.M142Ifs*6 0.15 TCGA-G3-A7M9-01 6 50740396 50740396 C T TFAP2D Missense_Mutation p.A393V 0.39 deleterious(0) probably_damaging(0.994) TCGA-G3-A7M9-01 6 74072885 74072885 G T KHDC3L Missense_Mutation p.L79F 0.31 deleterious(0.01) benign(0.441) TCGA-G3-A7M9-01 6 74072886 74072886 G T KHDC3L Missense_Mutation p.D80Y 0.34 deleterious(0) probably_damaging(0.986) TCGA-G3-A7M9-01 6 76720891 76720891 T A IMPG1 Missense_Mutation p.L286F 0.43 deleterious(0.01) probably_damaging(0.991) TCGA-G3-A7M9-01 6 91269811 91269811 C A MAP3K7 Missense_Mutation p.D156Y 0.49 deleterious(0) probably_damaging(1) TCGA-G3-A7M9-01 6 94120578 94120578 C T EPHA7 Missense_Mutation p.G158D 0.36 tolerated(0.42) probably_damaging(0.997) TCGA-G3-A7M9-01 7 100172744 100172744 G T LRCH4 Missense_Mutation p.L680I 0.11 deleterious(0.01) unknown(0) TCGA-G3-A7M9-01 7 105189009 105189009 T A RINT1 Nonsense_Mutation p.L283* 0.09 TCGA-G3-A7M9-01 7 135300725 135300725 A G NUP205 Silent p.L1124L 0.23 TCGA-G3-A7M9-01 7 143088505 143088505 T A EPHA1 3'UTR 0.25 TCGA-G3-A7M9-01 7 48431663 48431663 G T ABCA13 Nonsense_Mutation p.E3934* 0.37 TCGA-G3-A7M9-01 7 82531973 82531973 C T PCLO Missense_Mutation p.V4508I 0.34 unknown(0) TCGA-G3-A7M9-01 7 92837990 92837990 T A HEPACAM2 Missense_Mutation p.K305N 0.33 deleterious(0.04) benign(0.038) TCGA-G3-A7M9-01 7 97614187 97614187 G T OCM2 3'UTR 0.21 TCGA-G3-A7M9-01 8 11615852 11615852 C T GATA4 Silent p.V399V 0.35 TCGA-G3-A7M9-01 8 116427295 116427295 G T TRPS1 Missense_Mutation p.N947K 0.42 deleterious(0) probably_damaging(0.997) TCGA-G3-A7M9-01 8 120795802 120795802 T C TAF2 Missense_Mutation p.Q644R 0.09 deleterious(0) probably_damaging(0.994) TCGA-G3-A7M9-01 8 12880981 12880981 A G KIAA1456 3'UTR 0.10 TCGA-G3-A7M9-01 8 37691506 37691506 A G GPR124 Missense_Mutation p.M490V 0.10 tolerated(0.06) probably_damaging(0.93) TCGA-G3-A7M9-01 8 39505913 39505913 G C ADAM18 Missense_Mutation p.R366T 0.07 tolerated(0.07) benign(0.038) TCGA-G3-A7M9-01 8 39505935 39505935 G A ADAM18 Silent p.E373E 0.07 TCGA-G3-A7M9-01 8 67771909 67771909 A T SGK3 3'UTR 0.35 TCGA-G3-A7M9-01 8 77768145 77768145 G A ZFHX4 Missense_Mutation p.M2996I 0.38 benign(0.109) TCGA-G3-A7M9-01 8 9538246 9538246 A T TNKS Missense_Mutation p.E348V 0.38 tolerated(0.27) possibly_damaging(0.597) TCGA-G3-A7M9-01 8 9567850 9567850 G T TNKS Intron 0.69 TCGA-G3-A7M9-01 9 100365038 100365038 A G TSTD2 Missense_Mutation p.C422R 0.44 deleterious(0) probably_damaging(0.999) TCGA-G3-A7M9-01 9 100667207 100667207 C A C9orf156 Silent p.V378V 0.19 TCGA-G3-A7M9-01 9 113100119 113100119 A T TXNDC8 5'Flank 0.35 TCGA-G3-A7M9-01 9 131584861 131584861 T G ENDOG Missense_Mutation p.L289R 0.21 deleterious_low_confidence(0.04) benign(0.23) TCGA-G3-A7M9-01 9 137630354 137630354 G A COL5A1 Missense_Mutation p.G475D 0.63 probably_damaging(1) TCGA-G3-A7M9-01 9 139943131 139943131 G T ENTPD2 Missense_Mutation p.A489D 0.08 tolerated(0.18) benign(0.231) TCGA-G3-A7M9-01 9 140158810 140158810 G T NELFB Splice_Site p.X299_splice 0.61 TCGA-G3-A7M9-01 9 27206621 27206621 C A TEK Silent p.A802A 0.33 TCGA-G3-A7M9-01 9 34993331 34993331 A C DNAJB5 Missense_Mutation p.D148A 0.36 deleterious(0) probably_damaging(0.998) TCGA-G3-A7M9-01 9 43737465 43737465 T G CNTNAP3B Missense_Mutation p.M112R 0.78 deleterious(0) probably_damaging(0.985) TCGA-G3-A7M9-01 9 5231621 5231621 C A INSL4 Missense_Mutation p.P33H 0.26 tolerated(0.58) probably_damaging(0.979) TCGA-G3-A7M9-01 9 82267541 82267541 C A TLE4 Missense_Mutation p.H142N 0.23 tolerated(0.08) benign(0.089) TCGA-G3-A7M9-01 9 88967620 88967620 C A ZCCHC6 Silent p.T165T 0.27 TCGA-G3-A7M9-01 X 110416299 110416299 A G PAK3 Missense_Mutation p.I310V 0.84 deleterious(0.01) probably_damaging(0.937) TCGA-G3-A7M9-01 X 125955203 125955203 G C CXorf64 Missense_Mutation p.E194D 0.72 deleterious(0.05) benign(0.248) TCGA-G3-A7M9-01 X 49957907 49957907 G T AKAP4 Missense_Mutation p.P486Q 0.73 tolerated(0.46) benign(0.026) TCGA-G3-AAUZ-01 10 126655297 126655297 C T ZRANB1 Missense_Mutation p.H317Y 0.25 deleterious(0.03) benign(0.014) TCGA-G3-AAUZ-01 10 35930025 35930025 G A FZD8 Silent p.C111C 0.21 TCGA-G3-AAUZ-01 10 48388584 48388584 A G RBP3 Missense_Mutation p.V765A 0.32 deleterious(0.02) benign(0.001) TCGA-G3-AAUZ-01 10 5009211 5009211 T G AKR1C1 Silent p.L115L 0.10 TCGA-G3-AAUZ-01 11 103780494 103780494 C A PDGFD Missense_Mutation p.M347I 0.34 tolerated(0.2) probably_damaging(0.997) TCGA-G3-AAUZ-01 11 105782776 105782776 T A GRIA4 Intron 0.06 TCGA-G3-AAUZ-01 11 33628245 33628245 C A KIAA1549L Silent p.A1349A 0.43 TCGA-G3-AAUZ-01 11 57563046 57563046 T A CTNND1 Intron 0.08 TCGA-G3-AAUZ-01 11 63342458 63342458 T C PLA2G16 Missense_Mutation p.I150V 0.05 tolerated(0.28) benign(0.005) TCGA-G3-AAUZ-01 12 109834356 109834356 A G MYO1H Missense_Mutation p.D137G 0.32 deleterious(0.01) possibly_damaging(0.886) TCGA-G3-AAUZ-01 12 110011320 110011320 G A MVK 5'Flank 0.42 TCGA-G3-AAUZ-01 12 110778716 110778716 G T ATP2A2 Missense_Mutation p.A672S 0.38 deleterious(0.05) possibly_damaging(0.502) TCGA-G3-AAUZ-01 12 120271933 120271933 T C CIT Missense_Mutation p.I206V 0.35 tolerated(1) benign(0.002) TCGA-G3-AAUZ-01 12 39242371 39242371 G A CPNE8 Missense_Mutation p.R94C 0.39 deleterious(0) probably_damaging(1) TCGA-G3-AAUZ-01 13 21721331 21721331 G A SAP18 Silent p.K123K 0.21 TCGA-G3-AAUZ-01 13 23907171 23907171 T G SACS Missense_Mutation p.N3615T 0.24 benign(0.02) TCGA-G3-AAUZ-01 14 37198709 37198709 T C SLC25A21 Intron 0.08 TCGA-G3-AAUZ-01 14 89878384 89878384 T C FOXN3 Missense_Mutation p.E146G 0.20 deleterious(0) benign(0.004) TCGA-G3-AAUZ-01 15 39874930 39874930 G T THBS1 Missense_Mutation p.G202W 0.36 deleterious(0) probably_damaging(1) TCGA-G3-AAUZ-01 15 48433441 48433441 G A MYEF2 3'UTR 0.38 TCGA-G3-AAUZ-01 15 53081884 53081884 T G ONECUT1 Silent p.G66G 0.40 TCGA-G3-AAUZ-01 15 79067100 79067100 C A ADAMTS7 Missense_Mutation p.R581L 0.17 deleterious(0) probably_damaging(0.99) TCGA-G3-AAUZ-01 16 1486703 1486703 A G CCDC154 Missense_Mutation p.L476P 0.06 deleterious(0) probably_damaging(0.98) TCGA-G3-AAUZ-01 16 18841077 18841077 C A SMG1 Missense_Mutation p.G3045V 0.34 deleterious(0.03) probably_damaging(0.999) TCGA-G3-AAUZ-01 16 86601530 86601530 A T FOXC2 Missense_Mutation p.T197S 0.61 tolerated(0.75) benign(0) TCGA-G3-AAUZ-01 17 16040642 16040642 G A NCOR1 Missense_Mutation p.R498C 0.70 probably_damaging(0.998) TCGA-G3-AAUZ-01 17 20108414 20108414 A G SPECC1 Missense_Mutation p.K351R 0.07 tolerated(0.32) benign(0.03) TCGA-G3-AAUZ-01 17 26495650 26495650 A T NLK Missense_Mutation p.R338S 0.07 deleterious(0) probably_damaging(0.99) TCGA-G3-AAUZ-01 17 43592315 43592315 C T LRRC37A4P RNA 0.20 TCGA-G3-AAUZ-01 17 5991415 5991415 G T WSCD1 Missense_Mutation p.C178F 0.10 deleterious(0) probably_damaging(1) TCGA-G3-AAUZ-01 17 76481047 76481047 C G DNAH17 Missense_Mutation p.V2504L 0.11 benign(0.04) TCGA-G3-AAUZ-01 19 1360549 1360549 A G MUM1 Missense_Mutation p.N211S 0.28 tolerated(0.86) benign(0.001) TCGA-G3-AAUZ-01 19 35843358 35843358 C T FFAR1 3'UTR 0.54 TCGA-G3-AAUZ-01 19 39025793 39025793 C A RYR1 Missense_Mutation p.A3791D 0.23 benign(0.022) TCGA-G3-AAUZ-01 19 44529605 44529605 A G ZNF222 Missense_Mutation p.E6G 0.37 deleterious_low_confidence(0.03) possibly_damaging(0.859) TCGA-G3-AAUZ-01 19 45797639 45797639 A G MARK4 Silent p.R509R 0.37 TCGA-G3-AAUZ-01 19 50434173 50434173 A C ATF5 Silent p.G22G 0.36 TCGA-G3-AAUZ-01 19 8550614 8550614 C - HNRNPM Frame_Shift_Del p.I434Mfs*94 0.25 TCGA-G3-AAUZ-01 1 1148457 1148457 C G TNFRSF4 Silent p.R95R 0.44 TCGA-G3-AAUZ-01 1 120839624 120839624 G A FAM72B 5'UTR 0.07 TCGA-G3-AAUZ-01 1 12785873 12785873 A G AADACL3 Silent p.G321G 0.42 TCGA-G3-AAUZ-01 1 12835197 12835197 T C PRAMEF12 Missense_Mutation p.C63R 0.22 tolerated(0.39) benign(0) TCGA-G3-AAUZ-01 1 145608260 145608260 T C POLR3C Missense_Mutation p.N146S 0.17 tolerated(0.88) benign(0) TCGA-G3-AAUZ-01 1 155311812 155311812 A C ASH1L Missense_Mutation p.I2792S 0.36 deleterious_low_confidence(0) benign(0.189) TCGA-G3-AAUZ-01 1 158046019 158046019 G - KIRREL Frame_Shift_Del p.L58Wfs*73 0.29 TCGA-G3-AAUZ-01 1 207975860 207975860 T G C1orf132 RNA 0.38 TCGA-G3-AAUZ-01 1 22032230 22032230 C T USP48 Missense_Mutation p.D792N 0.22 tolerated(0.09) benign(0.175) TCGA-G3-AAUZ-01 1 228246759 228246759 T A WNT3A Missense_Mutation p.W218R 0.26 deleterious(0) probably_damaging(0.998) TCGA-G3-AAUZ-01 1 232144685 232144685 C A DISC1 Missense_Mutation p.P733T 0.38 tolerated(0.12) benign(0.004) TCGA-G3-AAUZ-01 1 23232505 23232505 C T EPHB2 Silent p.I598I 0.29 TCGA-G3-AAUZ-01 1 242253035 242253035 T G PLD5 3'UTR 0.09 TCGA-G3-AAUZ-01 1 36031090 36031090 C T NCDN Silent p.G672G 0.43 TCGA-G3-AAUZ-01 1 36755239 36755239 A G THRAP3 Missense_Mutation p.K540R 0.21 tolerated(0.23) probably_damaging(0.969) TCGA-G3-AAUZ-01 1 40770006 40770006 C T COL9A2 Missense_Mutation p.V425I 0.31 tolerated(0.55) benign(0.041) TCGA-G3-AAUZ-01 1 46768970 46768970 C A LRRC41 Missense_Mutation p.A9S 0.37 tolerated_low_confidence(0.32) benign(0.397) TCGA-G3-AAUZ-01 1 52254955 52254955 A C NRD1 Missense_Mutation p.F1205V 0.39 deleterious(0) probably_damaging(0.928) TCGA-G3-AAUZ-01 1 60331564 60331564 G A HOOK1 Missense_Mutation p.E589K 0.34 tolerated(0.09) benign(0.338) TCGA-G3-AAUZ-01 1 84955365 84955365 A T RPF1 Missense_Mutation p.Q139L 0.31 tolerated(0.29) benign(0.001) TCGA-G3-AAUZ-01 20 35540887 35540887 T G SAMHD1 Missense_Mutation p.K377N 0.25 deleterious(0) possibly_damaging(0.581) TCGA-G3-AAUZ-01 20 40043911 40043911 C G CHD6 Missense_Mutation p.R2285T 0.41 deleterious(0) probably_damaging(0.997) TCGA-G3-AAUZ-01 21 31587422 31587422 A G CLDN8 3'UTR 0.14 TCGA-G3-AAUZ-01 21 34540825 34540825 G T C21orf54 Missense_Mutation p.Q77K 0.30 benign(0.095) TCGA-G3-AAUZ-01 21 38510935 38510935 A G TTC3 Missense_Mutation p.Q527R 0.13 deleterious(0.04) possibly_damaging(0.766) TCGA-G3-AAUZ-01 21 43523720 43523720 C T C21orf128 3'UTR 0.32 TCGA-G3-AAUZ-01 21 43531035 43531035 G C UMODL1 Missense_Mutation p.G568A 0.49 tolerated(0.38) benign(0.259) TCGA-G3-AAUZ-01 22 18893755 18893755 G C DGCR6 5'UTR 0.40 TCGA-G3-AAUZ-01 2 112540018 112540018 T G ANAPC1 Missense_Mutation p.E1710D 0.29 tolerated(0.29) benign(0.018) TCGA-G3-AAUZ-01 2 163027578 163027578 G T FAP Missense_Mutation p.Q732K 0.20 tolerated(1) benign(0.023) TCGA-G3-AAUZ-01 2 228996764 228996764 G T SPHKAP Missense_Mutation p.P24T 0.43 tolerated(0.37) benign(0.01) TCGA-G3-AAUZ-01 2 55470681 55470681 C A MTIF2 Nonsense_Mutation p.E479* 0.41 TCGA-G3-AAUZ-01 3 119530469 119530469 G T NR1I2 Nonsense_Mutation p.G178* 0.06 TCGA-G3-AAUZ-01 3 170732428 170732428 C G SLC2A2 Silent p.L67L 0.21 TCGA-G3-AAUZ-01 3 170732455 170732457 GTT - SLC2A2 In_Frame_Del p.N58del 0.25 TCGA-G3-AAUZ-01 3 183959685 183959685 C A VWA5B2 Nonsense_Mutation p.C1196* 0.18 TCGA-G3-AAUZ-01 3 30045452 30045452 C A RBMS3 3'UTR 0.14 TCGA-G3-AAUZ-01 3 42916016 42916016 C A CYP8B1 Missense_Mutation p.M431I 0.35 deleterious(0) probably_damaging(0.994) TCGA-G3-AAUZ-01 4 103720567 103720568 TC - UBE2D3 Frame_Shift_Del p.D134* 0.34 TCGA-G3-AAUZ-01 4 119947953 119947953 T A SYNPO2 Silent p.A143A 0.25 TCGA-G3-AAUZ-01 4 126237717 126237717 G T FAT4 Missense_Mutation p.V51L 0.53 benign(0.026) TCGA-G3-AAUZ-01 4 166033978 166033978 C A TMEM192 5'UTR 0.29 TCGA-G3-AAUZ-01 4 166978381 166978381 G A TLL1 Missense_Mutation p.R589Q 0.67 tolerated(0.1) benign(0.172) TCGA-G3-AAUZ-01 4 57164426 57164426 A T KIAA1211 Missense_Mutation p.I11F 0.62 deleterious(0) probably_damaging(0.99) TCGA-G3-AAUZ-01 5 112823977 112823977 C G MCC Missense_Mutation p.Q45H 0.50 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-G3-AAUZ-01 5 14713763 14713763 C T ANKH Silent p.A385A 0.49 TCGA-G3-AAUZ-01 5 167984473 167984473 T C PANK3 3'UTR 0.23 TCGA-G3-AAUZ-01 5 175923517 175923517 C A FAF2 Missense_Mutation p.P231Q 0.31 deleterious(0) probably_damaging(0.975) TCGA-G3-AAUZ-01 6 109771627 109771627 T A MICAL1 Missense_Mutation p.H356L 0.38 tolerated(0.27) benign(0.004) TCGA-G3-AAUZ-01 6 109803061 109803061 C A ZBTB24 Missense_Mutation p.A57S 0.34 tolerated(0.08) probably_damaging(0.992) TCGA-G3-AAUZ-01 6 122777722 122777722 C T SERINC1 Missense_Mutation p.R92H 0.12 deleterious(0.01) probably_damaging(1) TCGA-G3-AAUZ-01 6 151748616 151748616 C T RMND1 Splice_Site p.X277_splice 0.26 TCGA-G3-AAUZ-01 6 152540223 152540223 G A SYNE1 Missense_Mutation p.S7320L 0.31 benign(0.017) TCGA-G3-AAUZ-01 6 152631131 152631131 A G SYNE1 Missense_Mutation p.S5681P 0.10 probably_damaging(0.991) TCGA-G3-AAUZ-01 6 154428655 154428655 A G OPRM1 Intron 0.40 TCGA-G3-AAUZ-01 6 33638235 33638235 G T ITPR3 Missense_Mutation p.A775S 0.36 deleterious(0.01) probably_damaging(1) TCGA-G3-AAUZ-01 6 42905826 42905827 AG - CNPY3 Splice_Site p.X166_splice 0.17 TCGA-G3-AAUZ-01 6 64395889 64395889 A G PHF3 Intron 0.39 TCGA-G3-AAUZ-01 7 134644750 134644750 A C CALD1 Missense_Mutation p.K696T 0.40 deleterious(0) probably_damaging(0.977) TCGA-G3-AAUZ-01 7 20824970 20824970 C T SP8 Missense_Mutation p.G156S 0.07 tolerated(0.76) benign(0.007) TCGA-G3-AAUZ-01 7 2564371 2564371 C T LFNG Missense_Mutation p.H159Y 0.34 deleterious(0.05) benign(0.079) TCGA-G3-AAUZ-01 7 36447554 36447554 C A ANLN Missense_Mutation p.S362Y 0.14 deleterious(0.03) possibly_damaging(0.521) TCGA-G3-AAUZ-01 7 70800596 70800596 C T WBSCR17 Missense_Mutation p.P100L 0.41 deleterious(0.03) benign(0.05) TCGA-G3-AAUZ-01 7 72951654 72951654 C A BCL7B Missense_Mutation p.V195L 0.36 deleterious_low_confidence(0.01) benign(0.098) TCGA-G3-AAUZ-01 7 73280168 73280168 A G WBSCR28 Missense_Mutation p.T255A 0.53 deleterious(0.01) benign(0) TCGA-G3-AAUZ-01 7 77755020 77755020 C A MAGI2 Silent p.G1186G 0.34 TCGA-G3-AAUZ-01 7 99474131 99474131 G C OR2AE1 Missense_Mutation p.H176D 0.08 deleterious(0) probably_damaging(0.999) TCGA-G3-AAUZ-01 7 99704953 99704953 A G TAF6 Silent p.A687A 0.54 TCGA-G3-AAUZ-01 8 124787447 124787447 A G FAM91A1 Missense_Mutation p.D73G 0.10 tolerated(0.11) benign(0.053) TCGA-G3-AAUZ-01 8 126011477 126011477 A G SQLE 5'UTR 0.39 TCGA-G3-AAUZ-01 8 2054372 2054372 G T MYOM2 Missense_Mutation p.V995F 0.66 deleterious(0.01) benign(0.361) TCGA-G3-AAUZ-01 8 42938314 42938314 A C FNTA Missense_Mutation p.Y279S 0.55 deleterious(0) probably_damaging(1) TCGA-G3-AAUZ-01 9 112900409 112900411 CTC - PALM2-AKAP2 In_Frame_Del p.P863del 0.14 TCGA-G3-AAUZ-01 9 123930429 123930429 G C CNTRL Missense_Mutation p.S1967T 0.15 benign(0.066) TCGA-G3-AAUZ-01 9 133971940 133971940 G T AIF1L 5'UTR 0.48 TCGA-G3-AAUZ-01 9 137707833 137707833 C T COL5A1 Missense_Mutation p.T1374M 0.35 unknown(0) TCGA-G3-AAUZ-01 9 16738420 16738420 C A BNC2 Nonsense_Mutation p.E23* 0.44 TCGA-G3-AAUZ-01 9 2070419 2070419 A C SMARCA2 Missense_Mutation p.K565T 0.40 benign(0.403) TCGA-G3-AAV0-01 10 101476153 101476153 T C COX15 Silent p.R351R 0.32 TCGA-G3-AAV0-01 10 103867930 103867930 C T LDB1 Missense_Mutation p.A386T 0.39 tolerated(0.58) benign(0.001) TCGA-G3-AAV0-01 10 112838915 112838915 C T ADRA2A Silent p.F387F 0.31 TCGA-G3-AAV0-01 10 26589783 26589783 G A GAD2 Missense_Mutation p.G551R 0.43 tolerated(0.18) probably_damaging(0.998) TCGA-G3-AAV0-01 10 29812899 29812899 C T SVIL Missense_Mutation p.V882I 0.05 tolerated(0.18) benign(0.002) TCGA-G3-AAV0-01 10 64575807 64575807 T G EGR2 5'UTR 0.34 TCGA-G3-AAV0-01 10 88231999 88232010 TTAAGCCACTTA - WAPAL Nonsense_Mutation p.L662_K666delins* 0.31 TCGA-G3-AAV0-01 10 94669328 94669328 A C EXOC6 Missense_Mutation p.K201N 0.38 tolerated(0.05) benign(0.015) TCGA-G3-AAV0-01 10 96745877 96745877 C A CYP2C9 Missense_Mutation p.L413M 0.37 deleterious(0) probably_damaging(1) TCGA-G3-AAV0-01 11 111941345 111941345 C T PIH1D2 Missense_Mutation p.V210I 0.71 tolerated(0.23) benign(0.024) TCGA-G3-AAV0-01 11 114271428 114271428 T C RBM7 Missense_Mutation p.L12P 0.14 deleterious(0) probably_damaging(0.984) TCGA-G3-AAV0-01 11 33565296 33565296 T A KIAA1549L Silent p.I432I 0.35 TCGA-G3-AAV0-01 11 35828058 35828058 C A TRIM44 3'UTR 0.34 TCGA-G3-AAV0-01 11 46567302 46567302 C A AMBRA1 Missense_Mutation p.D135Y 0.39 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-G3-AAV0-01 11 55579061 55579061 T A OR5L1 Nonsense_Mutation p.L40* 0.38 TCGA-G3-AAV0-01 11 64005084 64005084 C G VEGFB Silent p.S201S 0.30 TCGA-G3-AAV0-01 11 67200122 67200122 C A RPS6KB2 Missense_Mutation p.T170K 0.33 deleterious(0.03) probably_damaging(0.922) TCGA-G3-AAV0-01 11 67290843 67290843 T A CABP2 5'UTR 0.58 TCGA-G3-AAV0-01 11 68816447 68816447 C T TPCN2 5'UTR 0.29 TCGA-G3-AAV0-01 11 76890167 76890167 T C MYO7A Missense_Mutation p.Y787H 0.54 deleterious(0) probably_damaging(0.943) TCGA-G3-AAV0-01 11 77669833 77669833 T A INTS4 Silent p.A252A 0.58 TCGA-G3-AAV0-01 11 82443621 82443621 G A FAM181B Missense_Mutation p.P384L 0.07 tolerated_low_confidence(0.07) possibly_damaging(0.491) TCGA-G3-AAV0-01 11 82877710 82877710 T C PCF11 Missense_Mutation p.S591P 0.31 tolerated(0.38) benign(0.07) TCGA-G3-AAV0-01 11 82877748 82877749 - AAT PCF11 In_Frame_Ins p.N604dup 0.21 TCGA-G3-AAV0-01 12 103310862 103310862 G A PAH Missense_Mutation p.S16F 0.38 deleterious(0.04) benign(0.001) TCGA-G3-AAV0-01 12 112583390 112583390 G A TRAFD1 Missense_Mutation p.G284D 0.06 tolerated(0.09) probably_damaging(0.941) TCGA-G3-AAV0-01 12 113573220 113573220 C T RASAL1 Silent p.A16A 0.11 TCGA-G3-AAV0-01 12 124242532 124242532 T G ATP6V0A2 Missense_Mutation p.F842V 0.27 deleterious(0) benign(0.328) TCGA-G3-AAV0-01 12 40668428 40668428 T C LRRK2 Missense_Mutation p.I567T 0.32 deleterious(0) benign(0.131) TCGA-G3-AAV0-01 12 48152181 48152181 T C RAPGEF3 Intron 0.37 TCGA-G3-AAV0-01 12 49431855 49431855 C T KMT2D Missense_Mutation p.G3095D 0.41 possibly_damaging(0.622) TCGA-G3-AAV0-01 12 52757067 52757067 C A KRT85 Missense_Mutation p.R305L 0.08 deleterious(0.01) possibly_damaging(0.536) TCGA-G3-AAV0-01 12 52826861 52826861 A - KRT75 Frame_Shift_Del p.L225Rfs*30 0.28 TCGA-G3-AAV0-01 12 56817448 56817448 C T TIMELESS Silent p.E670E 0.07 TCGA-G3-AAV0-01 12 57136845 57136845 T A PRIM1 Missense_Mutation p.E225V 0.42 deleterious(0.03) benign(0.278) TCGA-G3-AAV0-01 12 7551140 7551140 G T CD163L1 Missense_Mutation p.S483R 0.36 deleterious(0.04) possibly_damaging(0.568) TCGA-G3-AAV0-01 12 8608687 8608687 T C CLEC6A 5'UTR 0.37 TCGA-G3-AAV0-01 13 100206556 100206556 A T TM9SF2 Splice_Site p.X497_splice 0.32 TCGA-G3-AAV0-01 13 110434682 110434682 C T IRS2 Missense_Mutation p.R1240H 0.42 deleterious(0.05) possibly_damaging(0.474) TCGA-G3-AAV0-01 13 113750772 113750772 G A MCF2L Missense_Mutation p.V1055M 0.48 deleterious(0.05) benign(0.055) TCGA-G3-AAV0-01 13 25265114 25265114 C T ATP12A Missense_Mutation p.P271L 0.39 tolerated(0.67) benign(0) TCGA-G3-AAV0-01 14 100070278 100070278 T C CCDC85C Missense_Mutation p.T7A 0.30 tolerated_low_confidence(1) unknown(0) TCGA-G3-AAV0-01 14 20216431 20216431 T C OR4Q3 Missense_Mutation p.M282T 0.18 deleterious(0) benign(0.143) TCGA-G3-AAV0-01 14 24563556 24563556 T G PCK2 5'UTR 0.10 TCGA-G3-AAV0-01 14 74035870 74035870 T C ACOT2 5'UTR 0.36 TCGA-G3-AAV0-01 14 74035872 74035872 T C ACOT2 5'UTR 0.36 TCGA-G3-AAV0-01 15 100332423 100332423 A G AC090825.1 5'Flank 0.50 TCGA-G3-AAV0-01 15 41988768 41988768 C T MGA Silent p.F520F 0.37 TCGA-G3-AAV0-01 15 42839593 42839593 G C LRRC57 Missense_Mutation p.L120V 0.40 deleterious(0.04) benign(0.107) TCGA-G3-AAV0-01 15 55972370 55972370 T G PRTG Silent p.G285G 0.41 TCGA-G3-AAV0-01 15 65693281 65693281 G A IGDCC4 Missense_Mutation p.S235F 0.09 deleterious(0.02) possibly_damaging(0.535) TCGA-G3-AAV0-01 15 75628401 75628401 G A COMMD4 5'UTR 0.43 TCGA-G3-AAV0-01 15 78556708 78556709 - AAAGG DNAJA4 Frame_Shift_Ins p.Q21Rfs*13 0.59 TCGA-G3-AAV0-01 15 86124904 86124904 C G AKAP13 Nonsense_Mutation p.S1202* 0.20 TCGA-G3-AAV0-01 15 86814917 86814917 C T AGBL1 Silent p.G639G 0.33 TCGA-G3-AAV0-01 16 3778017 3778017 C T CREBBP Missense_Mutation p.R2344Q 0.42 unknown(0) TCGA-G3-AAV0-01 16 48385598 48385598 T C LONP2 Missense_Mutation p.V815A 0.30 tolerated(0.09) possibly_damaging(0.672) TCGA-G3-AAV0-01 16 74485872 74485872 A G GLG1 3'UTR 0.44 TCGA-G3-AAV0-01 17 11650915 11650915 T C DNAH9 Missense_Mutation p.F2148L 0.35 probably_damaging(0.973) TCGA-G3-AAV0-01 17 19250403 19250403 A G B9D1 Intron 0.45 TCGA-G3-AAV0-01 17 29123225 29123225 C T CRLF3 Missense_Mutation p.E186K 0.07 deleterious(0.02) probably_damaging(0.994) TCGA-G3-AAV0-01 17 30814609 30814609 G T CDK5R1 5'UTR 0.38 TCGA-G3-AAV0-01 17 33968894 33968894 A T AP2B1 Splice_Site p.X480_splice 0.35 TCGA-G3-AAV0-01 17 37381805 37381805 C A STAC2 5'UTR 0.45 TCGA-G3-AAV0-01 17 42171077 42171077 G T HDAC5 Missense_Mutation p.Q75K 0.43 tolerated_low_confidence(0.47) benign(0.004) TCGA-G3-AAV0-01 17 42171078 42171078 C T HDAC5 Silent p.E74E 0.43 TCGA-G3-AAV0-01 17 42452979 42452979 G T ITGA2B Missense_Mutation p.L903I 0.39 tolerated(0.33) benign(0.424) TCGA-G3-AAV0-01 17 56247048 56247048 A T OR4D2 Missense_Mutation p.D11V 0.40 deleterious(0.01) benign(0.001) TCGA-G3-AAV0-01 17 61511651 61511651 C G CYB561 3'UTR 0.36 TCGA-G3-AAV0-01 17 80280192 80280192 C T SECTM1 Missense_Mutation p.A198T 0.42 tolerated_low_confidence(1) benign(0) TCGA-G3-AAV0-01 17 80684867 80684867 C T FN3KRP Silent p.G250G 0.37 TCGA-G3-AAV0-01 18 21343451 21343451 C T LAMA3 Silent p.G382G 0.40 TCGA-G3-AAV0-01 18 21649143 21649143 C T TTC39C Missense_Mutation p.P123L 0.44 tolerated(0.71) benign(0.001) TCGA-G3-AAV0-01 18 23937719 23937719 T A TAF4B Silent p.I794I 0.39 TCGA-G3-AAV0-01 18 32886895 32886895 T G ZNF271 RNA 0.46 TCGA-G3-AAV0-01 19 10943778 10943791 CCCGCTCCAAGTTG - DNM2 3'Flank 0.30 TCGA-G3-AAV0-01 19 11339658 11339658 G A DOCK6 Silent p.R924R 0.29 TCGA-G3-AAV0-01 19 12244794 12244794 C T ZNF20 Missense_Mutation p.M69I 0.30 tolerated(0.36) benign(0.005) TCGA-G3-AAV0-01 19 12491496 12491496 C A CTD-3105H18.14 3'UTR 0.25 TCGA-G3-AAV0-01 19 17534830 17534830 C T MVB12A Missense_Mutation p.P219L 0.32 deleterious(0) probably_damaging(0.92) TCGA-G3-AAV0-01 19 19737371 19737371 C T LPAR2 Silent p.K241K 0.25 TCGA-G3-AAV0-01 19 19823467 19823467 T C ZNF14 Missense_Mutation p.Y208C 0.24 tolerated(0.24) probably_damaging(0.999) TCGA-G3-AAV0-01 19 21609856 21609856 A T ZNF493 3'UTR 0.31 TCGA-G3-AAV0-01 19 2275927 2275927 G A C19orf35 Missense_Mutation p.R392W 0.26 deleterious(0) probably_damaging(0.993) TCGA-G3-AAV0-01 19 32874076 32874076 A T ZNF507 3'UTR 0.39 TCGA-G3-AAV0-01 19 39068789 39068789 T A RYR1 Missense_Mutation p.M4770K 0.29 unknown(0) TCGA-G3-AAV0-01 19 39971479 39971479 T - TIMM50 Frame_Shift_Del p.W99Gfs*85 0.26 TCGA-G3-AAV0-01 19 40366455 40366455 C T FCGBP Silent p.G4593G 0.22 TCGA-G3-AAV0-01 19 41787180 41787180 G T HNRNPUL1 Silent p.A333A 0.22 TCGA-G3-AAV0-01 19 42343435 42343435 A C LYPD4 5'UTR 0.22 TCGA-G3-AAV0-01 19 44223843 44223843 T G IRGC Missense_Mutation p.F378C 0.26 deleterious(0) probably_damaging(0.979) TCGA-G3-AAV0-01 19 45872219 45872219 T A ERCC2 Missense_Mutation p.Y72F 0.21 deleterious(0.05) probably_damaging(0.944) TCGA-G3-AAV0-01 19 49459534 49459534 T C BAX Missense_Mutation p.F105L 0.04 tolerated(0.14) possibly_damaging(0.867) TCGA-G3-AAV0-01 19 49868878 49868879 - CCTCTCCAG DKKL1 In_Frame_Ins p.L100_S102dup 0.11 TCGA-G3-AAV0-01 19 49937289 49937289 C - SLC17A7 Frame_Shift_Del p.A218Rfs*68 0.14 TCGA-G3-AAV0-01 19 51170365 51170365 C A SHANK1 Missense_Mutation p.D1618Y 0.25 unknown(0) TCGA-G3-AAV0-01 19 51462563 51462563 C A KLK6 Missense_Mutation p.G198W 0.21 deleterious(0) probably_damaging(1) TCGA-G3-AAV0-01 19 51729149 51729149 A G CD33 Missense_Mutation p.E170G 0.20 deleterious(0) probably_damaging(0.945) TCGA-G3-AAV0-01 19 53643418 53643418 G T ZNF347 3'UTR 0.24 TCGA-G3-AAV0-01 19 53794479 53794479 C T BIRC8 5'UTR 0.26 TCGA-G3-AAV0-01 19 53855788 53855788 A G ZNF845 Silent p.S620S 0.44 TCGA-G3-AAV0-01 19 54976410 54976410 C A CDC42EP5 Missense_Mutation p.D108Y 0.25 deleterious(0) possibly_damaging(0.829) TCGA-G3-AAV0-01 19 55756527 55756527 C T PPP6R1 Silent p.Q193Q 0.17 TCGA-G3-AAV0-01 19 55888214 55888214 G T TMEM190 5'UTR 0.21 TCGA-G3-AAV0-01 19 5645350 5645350 A G SAFB Missense_Mutation p.I183M 0.27 tolerated(0.17) benign(0.048) TCGA-G3-AAV0-01 19 58258218 58258218 A G ZNF776 5'UTR 0.16 TCGA-G3-AAV0-01 19 8191482 8191482 G A FBN3 Silent p.T808T 0.18 TCGA-G3-AAV0-01 1 10195205 10195205 G C UBE4B Missense_Mutation p.A729P 0.45 tolerated(0.13) probably_damaging(0.926) TCGA-G3-AAV0-01 1 109793071 109793072 - C CELSR2 Frame_Shift_Ins p.Q126Tfs*87 0.28 TCGA-G3-AAV0-01 1 115262274 115262275 - G CSDE1 Frame_Shift_Ins p.D761Rfs*2 0.23 TCGA-G3-AAV0-01 1 120436684 120436684 T C ADAM30 Missense_Mutation p.Q759R 0.44 tolerated_low_confidence(0.37) benign(0.007) TCGA-G3-AAV0-01 1 153315636 153315636 A T PGLYRP4 Missense_Mutation p.N134K 0.27 tolerated(0.15) benign(0.014) TCGA-G3-AAV0-01 1 155171757 155171757 G T THBS3 Silent p.T389T 0.06 TCGA-G3-AAV0-01 1 155451459 155451459 T A ASH1L Missense_Mutation p.N401I 0.28 deleterious_low_confidence(0) benign(0.085) TCGA-G3-AAV0-01 1 169762137 169762137 T A METTL18 Missense_Mutation p.N234Y 0.30 deleterious(0) probably_damaging(0.996) TCGA-G3-AAV0-01 1 171511016 171511016 G A PRRC2C Missense_Mutation p.V1469I 0.31 unknown(0) TCGA-G3-AAV0-01 1 173469942 173469942 G A SLC9C2 3'UTR 0.18 TCGA-G3-AAV0-01 1 178408712 178408712 T C RASAL2 Splice_Site p.X276_splice 0.26 TCGA-G3-AAV0-01 1 179112161 179112161 G T ABL2 Intron 0.26 TCGA-G3-AAV0-01 1 200819254 200819254 T C CAMSAP2 Silent p.D1119D 0.54 TCGA-G3-AAV0-01 1 202119444 202119444 T G PTPN7 Silent p.L433L 0.26 TCGA-G3-AAV0-01 1 202163198 202163198 G T LGR6 Missense_Mutation p.Q27H 0.31 tolerated(0.09) unknown(0) TCGA-G3-AAV0-01 1 209879238 209879239 - GGAGCCCATGTGGT HSD11B1 Frame_Shift_Ins p.V63Efs*6 0.12 TCGA-G3-AAV0-01 1 210334239 210334239 A G SYT14 Missense_Mutation p.N571S 0.28 tolerated(0.16) benign(0.037) TCGA-G3-AAV0-01 1 217822303 217822303 G A SPATA17 Missense_Mutation p.A50T 0.56 deleterious(0.04) benign(0.344) TCGA-G3-AAV0-01 1 22902776 22902776 A C EPHA8 Missense_Mutation p.M76L 0.40 tolerated(0.14) probably_damaging(0.963) TCGA-G3-AAV0-01 1 22902805 22902806 CA - EPHA8 Frame_Shift_Del p.T86Efs*14 0.33 TCGA-G3-AAV0-01 1 24147006 24147006 A C HMGCL Missense_Mutation p.N46K 0.41 deleterious(0.01) possibly_damaging(0.569) TCGA-G3-AAV0-01 1 24147010 24147010 T A HMGCL Missense_Mutation p.Q45L 0.09 deleterious(0) possibly_damaging(0.564) TCGA-G3-AAV0-01 1 247027263 247027263 G T AHCTF1 Nonsense_Mutation p.S1177* 0.09 TCGA-G3-AAV0-01 1 247751681 247751681 C A OR2G2 Missense_Mutation p.T7N 0.30 tolerated(0.3) benign(0.032) TCGA-G3-AAV0-01 1 27874319 27874361 GTGGCCCAGGCTGGCCCCCTGGAGTCCATGCTTGAGGGGCTCG - AHDC1 Frame_Shift_Del p.C1422Wfs*9 0.35 TCGA-G3-AAV0-01 1 33430200 33430200 C T RNF19B Silent p.R29R 0.53 TCGA-G3-AAV0-01 1 35223441 35223441 C G GJB5 Silent p.P170P 0.36 TCGA-G3-AAV0-01 1 3542011 3542011 G A TPRG1L Silent p.V75V 0.41 TCGA-G3-AAV0-01 1 41976245 41976245 T A HIVEP3 Silent p.P2366P 0.28 TCGA-G3-AAV0-01 1 46269721 46269721 G A MAST2 Missense_Mutation p.A52T 0.37 tolerated_low_confidence(0.18) benign(0.001) TCGA-G3-AAV0-01 1 52705044 52705044 A T ZFYVE9 Missense_Mutation p.Y652F 0.39 tolerated(0.14) benign(0.013) TCGA-G3-AAV0-01 1 53995579 53995579 A C GLIS1 Missense_Mutation p.I281S 0.40 deleterious(0) probably_damaging(0.996) TCGA-G3-AAV0-01 1 6209325 6209325 T G CHD5 Missense_Mutation p.K381T 0.47 tolerated(0.11) benign(0.348) TCGA-G3-AAV0-01 1 65855003 65855003 G A DNAJC6 Missense_Mutation p.V420I 0.47 tolerated(0.34) benign(0.002) TCGA-G3-AAV0-01 1 67518480 67518480 C T SLC35D1 Missense_Mutation p.D100N 0.41 tolerated(0.13) possibly_damaging(0.884) TCGA-G3-AAV0-01 1 76216231 76216231 G C ACADM Missense_Mutation p.E319D 0.11 tolerated(0.19) benign(0) TCGA-G3-AAV0-01 20 31671301 31671301 G T BPIFB4 Missense_Mutation p.G100W 0.45 deleterious_low_confidence(0) probably_damaging(1) TCGA-G3-AAV0-01 20 40127986 40127986 T C CHD6 Silent p.E288E 0.48 TCGA-G3-AAV0-01 20 56140173 56140191 GCGGCTGCAGAACATAAAG T PCK1 Intron p.A466_G472delinsC 0.25 TCGA-G3-AAV0-01 21 15352195 15352195 C T ANKRD20A11P RNA 0.48 TCGA-G3-AAV0-01 21 33671288 33671288 C T MRAP Silent p.A2A 0.35 TCGA-G3-AAV0-01 21 34400613 34400613 G T OLIG2 3'UTR 0.33 TCGA-G3-AAV0-01 21 45877591 45877591 C G LRRC3 3'UTR 0.41 TCGA-G3-AAV0-01 21 47983839 47983839 G - DIP2A Frame_Shift_Del p.G1387Efs*5 0.29 TCGA-G3-AAV0-01 22 21343966 21344002 GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA - LZTR1 Splice_Site p.X217_splice 0.25 TCGA-G3-AAV0-01 22 44237756 44237757 CA - SULT4A1 Frame_Shift_Del p.D75Efs*45 0.11 TCGA-G3-AAV0-01 2 108475642 108475642 C - RGPD4 Frame_Shift_Del p.A450Vfs*9 0.16 TCGA-G3-AAV0-01 2 10937247 10937247 C A PDIA6 Missense_Mutation p.K102N 0.27 deleterious(0) probably_damaging(0.985) TCGA-G3-AAV0-01 2 11284492 11284492 C A C2orf50 3'UTR 0.37 TCGA-G3-AAV0-01 2 131984418 131984418 T G POTEE Missense_Mutation p.L278R 0.30 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-G3-AAV0-01 2 153192209 153192209 T A FMNL2 Missense_Mutation p.L31Q 0.46 probably_damaging(0.965) TCGA-G3-AAV0-01 2 168100314 168100314 G T XIRP2 Silent p.G804G 0.45 TCGA-G3-AAV0-01 2 168100315 168100315 G T XIRP2 Missense_Mutation p.V805L 0.45 probably_damaging(0.999) TCGA-G3-AAV0-01 2 179638708 179638708 T A TTN Missense_Mutation p.Q2396L 0.40 TCGA-G3-AAV0-01 2 206892945 206892945 C T INO80D Silent p.K396K 0.36 TCGA-G3-AAV0-01 2 21266885 21266885 G C APOB 5'UTR 0.26 TCGA-G3-AAV0-01 2 216243896 216243896 T A FN1 Missense_Mutation p.N1860I 0.16 tolerated(0.1) probably_damaging(1) TCGA-G3-AAV0-01 2 218924184 218924184 T A CXCR2P1 RNA 0.06 TCGA-G3-AAV0-01 2 24199886 24199886 C G UBXN2A Missense_Mutation p.D76E 0.19 deleterious(0.04) possibly_damaging(0.82) TCGA-G3-AAV0-01 2 24929659 24929659 T C NCOA1 Silent p.S440S 0.27 TCGA-G3-AAV0-01 2 27354146 27354146 G C PREB 3'UTR 0.42 TCGA-G3-AAV0-01 2 27598432 27598432 G A SNX17 Silent p.V278V 0.25 TCGA-G3-AAV0-01 2 33498742 33498742 G A LTBP1 Silent p.V879V 0.33 TCGA-G3-AAV0-01 2 44172541 44172541 T C LRPPRC Silent p.S742S 0.08 TCGA-G3-AAV0-01 2 64126619 64126619 C T VPS54 Missense_Mutation p.E908K 0.37 tolerated(0.1) benign(0.108) TCGA-G3-AAV0-01 2 7017965 7017965 A T RSAD2 Nonsense_Mutation p.K12* 0.30 TCGA-G3-AAV0-01 2 86385747 86385747 G T IMMT Missense_Mutation p.T377N 0.36 deleterious(0.01) probably_damaging(0.937) TCGA-G3-AAV0-01 2 86434440 86434440 T - MRPL35 Frame_Shift_Del p.V123Gfs*22 0.27 TCGA-G3-AAV0-01 3 101284684 101284684 A G TRMT10C Silent p.L353L 0.40 TCGA-G3-AAV0-01 3 112564604 112564604 T A CD200R1L 5'UTR 0.38 TCGA-G3-AAV0-01 3 11300884 11300884 G T HRH1 Missense_Mutation p.S54I 0.45 tolerated(0.1) benign(0.022) TCGA-G3-AAV0-01 3 121409566 121409566 T A GOLGB1 Missense_Mutation p.Q2882L 0.38 possibly_damaging(0.76) TCGA-G3-AAV0-01 3 126236538 126236538 A C UROC1 Missense_Mutation p.S9A 0.48 tolerated(0.59) benign(0.011) TCGA-G3-AAV0-01 3 127391218 127391218 G T PODXL2 Silent p.L571L 0.36 TCGA-G3-AAV0-01 3 135721279 135721279 T C PPP2R3A Silent p.N313N 0.38 TCGA-G3-AAV0-01 3 150320957 150320957 T C SERP1 5'UTR 0.62 TCGA-G3-AAV0-01 3 176750884 176750884 G A TBL1XR1 Nonsense_Mutation p.R431* 0.39 TCGA-G3-AAV0-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.43 tolerated(0.44) benign(0.085) TCGA-G3-AAV0-01 3 186272389 186272389 G T TBCCD1 Missense_Mutation p.L400I 0.03 deleterious(0.02) possibly_damaging(0.794) TCGA-G3-AAV0-01 3 186395095 186395095 C T HRG Missense_Mutation p.T334I 0.46 tolerated(0.15) possibly_damaging(0.507) TCGA-G3-AAV0-01 3 42678871 42678871 C A NKTR Missense_Mutation p.H559N 0.44 deleterious_low_confidence(0.02) unknown(0) TCGA-G3-AAV0-01 3 49166162 49166162 G A LAMB2 Silent p.L608L 0.47 TCGA-G3-AAV0-01 3 49694957 49694957 C A BSN Silent p.A2656A 0.39 TCGA-G3-AAV0-01 4 113538660 113538660 T A C4orf21 Missense_Mutation p.K846N 0.42 tolerated(0.05) benign(0.005) TCGA-G3-AAV0-01 4 123868516 123868516 G A SPATA5 Silent p.R529R 0.38 TCGA-G3-AAV0-01 4 129782877 129782877 C T JADE1 Missense_Mutation p.R334C 0.43 tolerated(0.05) probably_damaging(0.964) TCGA-G3-AAV0-01 4 139093093 139093093 A T SLC7A11 3'UTR 0.41 TCGA-G3-AAV0-01 4 141600769 141600769 C T TBC1D9 Missense_Mutation p.A197T 0.41 tolerated(0.16) possibly_damaging(0.596) TCGA-G3-AAV0-01 4 155163890 155163890 T A DCHS2 Missense_Mutation p.R1871W 0.51 deleterious(0) probably_damaging(0.989) TCGA-G3-AAV0-01 4 189068011 189068011 T A TRIML1 Missense_Mutation p.Y298N 0.38 deleterious(0.05) possibly_damaging(0.661) TCGA-G3-AAV0-01 4 39344053 39344054 - T RFC1 Frame_Shift_Ins p.N81Kfs*14 0.10 TCGA-G3-AAV0-01 4 46305505 46305505 T A GABRA2 Missense_Mutation p.R276S 0.45 deleterious(0.03) probably_damaging(0.93) TCGA-G3-AAV0-01 4 57181349 57181349 G A KIAA1211 Missense_Mutation p.A561T 0.39 tolerated(0.25) possibly_damaging(0.695) TCGA-G3-AAV0-01 4 74285253 74285253 C G ALB Missense_Mutation p.P561R 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-G3-AAV0-01 4 85569727 85569727 A C CDS1 Missense_Mutation p.K425T 0.73 deleterious(0.04) benign(0.141) TCGA-G3-AAV0-01 5 133326695 133326695 G A VDAC1 Nonsense_Mutation p.Q90* 0.44 TCGA-G3-AAV0-01 5 135389646 135389646 G A TGFBI Missense_Mutation p.E381K 0.36 deleterious(0.01) probably_damaging(0.977) TCGA-G3-AAV0-01 5 137708413 137708413 A G KDM3B Silent p.K81K 0.44 TCGA-G3-AAV0-01 5 138268367 138268367 T A CTNNA1 Missense_Mutation p.V800E 0.37 deleterious(0) probably_damaging(0.987) TCGA-G3-AAV0-01 5 139495849 139495849 T C PURA 3'UTR 0.37 TCGA-G3-AAV0-01 5 14394211 14394211 G A TRIO Missense_Mutation p.R1428Q 0.39 probably_damaging(0.999) TCGA-G3-AAV0-01 5 169693828 169693828 T G LCP2 Missense_Mutation p.R252S 0.36 deleterious(0.01) benign(0.424) TCGA-G3-AAV0-01 5 179046347 179046347 C T HNRNPH1 Silent p.G153G 0.40 TCGA-G3-AAV0-01 5 52376395 52376395 C T ITGA2 Nonsense_Mutation p.Q995* 0.40 TCGA-G3-AAV0-01 5 52776658 52776658 C G FST Missense_Mutation p.L13V 0.46 tolerated(0.39) benign(0.001) TCGA-G3-AAV0-01 5 64483860 64483860 C T ADAMTS6 Missense_Mutation p.A965T 0.06 tolerated(0.64) benign(0.007) TCGA-G3-AAV0-01 5 78379661 78379661 A C BHMT2 Missense_Mutation p.K331T 0.35 deleterious(0.02) possibly_damaging(0.703) TCGA-G3-AAV0-01 5 90079735 90079735 T C GPR98 Missense_Mutation p.I4505T 0.42 possibly_damaging(0.84) TCGA-G3-AAV0-01 6 110620219 110620219 T C METTL24 Missense_Mutation p.D231G 0.36 deleterious(0) possibly_damaging(0.559) TCGA-G3-AAV0-01 6 111695854 111695854 G - REV3L Frame_Shift_Del p.S1235Lfs*9 0.23 TCGA-G3-AAV0-01 6 11213881 11213881 G A NEDD9 Missense_Mutation p.T31I 0.42 deleterious(0) probably_damaging(0.997) TCGA-G3-AAV0-01 6 121624863 121624863 A C TBC1D32 Missense_Mutation p.V327G 0.06 deleterious(0) benign(0.419) TCGA-G3-AAV0-01 6 13978873 13978873 C T RNF182 3'UTR 0.53 TCGA-G3-AAV0-01 6 152671436 152671436 T C SYNE1 Missense_Mutation p.D3923G 0.38 benign(0.282) TCGA-G3-AAV0-01 6 29079911 29079911 C T OR2J3 Missense_Mutation p.P82S 0.44 deleterious(0) probably_damaging(0.954) TCGA-G3-AAV0-01 6 30955326 30955326 T G MUC21 Silent p.T458T 0.44 TCGA-G3-AAV0-01 6 31903820 31903820 G A C2 Missense_Mutation p.E324K 0.32 tolerated(0.09) benign(0.077) TCGA-G3-AAV0-01 6 31933608 31933608 C G SKIV2L Missense_Mutation p.R674G 0.30 deleterious(0) probably_damaging(0.995) TCGA-G3-AAV0-01 6 32847433 32847433 C G PPP1R2P1 RNA 0.42 TCGA-G3-AAV0-01 6 33264534 33264534 C T RGL2 Missense_Mutation p.R87H 0.37 tolerated(0.6) probably_damaging(0.933) TCGA-G3-AAV0-01 6 33288234 33288234 T G DAXX Missense_Mutation p.K392Q 0.43 tolerated(1) benign(0.005) TCGA-G3-AAV0-01 6 38758095 38758095 G A DNAH8 Missense_Mutation p.V682M 0.40 benign(0.002) TCGA-G3-AAV0-01 6 52132768 52132768 T A MCM3 Splice_Site p.X702_splice 0.39 TCGA-G3-AAV0-01 6 52550869 52550869 T G TMEM14A 3'UTR 0.38 TCGA-G3-AAV0-01 6 73017046 73017046 A G RIMS1 Silent p.Q1312Q 0.39 TCGA-G3-AAV0-01 6 82462416 82462416 T C FAM46A 5'UTR 0.38 TCGA-G3-AAV0-01 7 1097405 1097405 T G GPR146 Missense_Mutation p.L85R 0.31 deleterious(0) probably_damaging(0.997) TCGA-G3-AAV0-01 7 120381672 120381672 A G KCND2 Missense_Mutation p.N455D 0.41 tolerated_low_confidence(0.96) benign(0.004) TCGA-G3-AAV0-01 7 127729698 127729698 G A SND1 Missense_Mutation p.G859E 0.50 deleterious(0) probably_damaging(1) TCGA-G3-AAV0-01 7 156743034 156743034 G A NOM1 Silent p.K201K 0.47 TCGA-G3-AAV0-01 7 295993 295993 C G FAM20C Silent p.A417A 0.27 TCGA-G3-AAV0-01 7 36570105 36570124 AGAGTTGCTCTGCTCTCTGA - AOAH Splice_Site p.X476_splice 0.22 TCGA-G3-AAV0-01 7 37955894 37955894 C T SFRP4 Silent p.A82A 0.39 TCGA-G3-AAV0-01 7 81332030 81332030 C A HGF Missense_Mutation p.R685I 0.10 deleterious(0.02) benign(0.16) TCGA-G3-AAV0-01 7 82545938 82545938 A T PCLO Missense_Mutation p.D3788E 0.38 unknown(0) TCGA-G3-AAV0-01 7 87047881 87047881 A T ABCB4 Missense_Mutation p.L817H 0.39 deleterious(0) probably_damaging(1) TCGA-G3-AAV0-01 8 133492604 133492604 G T KCNQ3 Missense_Mutation p.A59D 0.38 deleterious(0.01) benign(0.082) TCGA-G3-AAV0-01 8 145737311 145737311 C T RECQL4 Missense_Mutation p.E1126K 0.11 tolerated(0.06) benign(0.078) TCGA-G3-AAV0-01 8 23217767 23217767 A C LOXL2 Missense_Mutation p.L123V 0.43 deleterious(0) possibly_damaging(0.648) TCGA-G3-AAV0-01 8 42037780 42037780 T C PLAT Missense_Mutation p.D401G 0.43 deleterious(0.03) benign(0.043) TCGA-G3-AAV0-01 8 42591884 42591884 A T CHRNB3 3'UTR 0.46 TCGA-G3-AAV0-01 8 70585100 70585100 A T SLCO5A1 3'UTR 0.41 TCGA-G3-AAV0-01 8 72958795 72958795 T G TRPA1 Missense_Mutation p.K672Q 0.50 tolerated(0.17) benign(0.046) TCGA-G3-AAV0-01 9 115652684 115652684 G C SLC46A2 Missense_Mutation p.A93G 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-G3-AAV0-01 9 140671290 140671290 C T EHMT1 Missense_Mutation p.T671M 0.07 deleterious(0.05) probably_damaging(0.925) TCGA-G3-AAV0-01 9 21077917 21077917 G A IFNB1 5'UTR 0.42 TCGA-G3-AAV0-01 9 21971036 21971036 C A CDKN2A Missense_Mutation p.D108Y 0.40 deleterious(0) probably_damaging(1) TCGA-G3-AAV0-01 9 33442436 33442436 C T AQP3 Silent p.E191E 0.36 TCGA-G3-AAV0-01 9 88897392 88897393 - CGGTGCCT ISCA1 5'UTR 0.22 TCGA-G3-AAV0-01 X 110490682 110490682 G T CAPN6 Missense_Mutation p.P553T 0.11 tolerated(0.5) probably_damaging(0.975) TCGA-G3-AAV0-01 X 122551286 122551286 A C GRIA3 Missense_Mutation p.T512P 0.43 deleterious(0) probably_damaging(0.922) TCGA-G3-AAV0-01 X 47836301 47836301 A C ZNF182 Silent p.T395T 0.05 TCGA-G3-AAV0-01 X 62974425 62974425 G C ARHGEF9 5'UTR 0.86 TCGA-G3-AAV1-01 10 134910566 134910566 G A GPR123 Missense_Mutation p.C31Y 0.65 deleterious(0) probably_damaging(0.988) TCGA-G3-AAV1-01 10 63170436 63170436 T G TMEM26 Missense_Mutation p.S251R 0.47 tolerated(0.06) probably_damaging(0.963) TCGA-G3-AAV1-01 10 79397504 79397504 C T KCNMA1 5'Flank 0.52 TCGA-G3-AAV1-01 11 106888708 106888708 T A GUCY1A2 Missense_Mutation p.E25V 0.24 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-G3-AAV1-01 11 108382004 108382004 A C EXPH5 Silent p.S1410S 0.45 TCGA-G3-AAV1-01 11 1279361 1279381 CCTGTGTGCCCGCCAGGGCAG GCAA MUC5B Frame_Shift_Del p.P5495Afs*74 0.32 TCGA-G3-AAV1-01 11 1279381 1279381 G A MUC5B Silent p.Q5501Q 0.42 TCGA-G3-AAV1-01 11 35828048 35828048 C T TRIM44 3'UTR 0.49 TCGA-G3-AAV1-01 11 57004140 57004140 C T APLNR Missense_Mutation p.M113I 0.42 deleterious(0.01) probably_damaging(0.984) TCGA-G3-AAV1-01 11 60893257 60893257 G T CD5 Missense_Mutation p.Q478H 0.07 tolerated(0.09) benign(0.052) TCGA-G3-AAV1-01 11 86665880 86665881 - T FZD4 Frame_Shift_Ins p.T83Nfs*47 0.18 TCGA-G3-AAV1-01 12 5672426 5672426 C A ANO2 3'UTR 0.24 TCGA-G3-AAV1-01 13 113731386 113731386 C - MCF2L Frame_Shift_Del p.Q508Rfs*17 0.29 TCGA-G3-AAV1-01 13 30814630 30814630 A G KATNAL1 Silent p.P231P 0.40 TCGA-G3-AAV1-01 13 31495898 31495898 G A MEDAG Silent p.T234T 0.38 TCGA-G3-AAV1-01 14 23355255 23355255 G A REM2 Missense_Mutation p.R181Q 0.44 tolerated(1) benign(0.001) TCGA-G3-AAV1-01 14 24608143 24608143 G A PSME1 3'UTR 0.31 TCGA-G3-AAV1-01 14 26949340 26949340 T A NOVA1 Missense_Mutation p.E97V 0.34 deleterious(0) unknown(0) TCGA-G3-AAV1-01 15 27126102 27126102 C A GABRA5 Missense_Mutation p.P66T 0.44 deleterious(0) probably_damaging(1) TCGA-G3-AAV1-01 15 32455518 32455518 G A CHRNA7 Silent p.G353G 0.52 TCGA-G3-AAV1-01 15 63922816 63922816 G T HERC1 Missense_Mutation p.P4272Q 0.04 probably_damaging(0.999) TCGA-G3-AAV1-01 15 83658816 83658816 C T FAM103A1 Silent p.Y118Y 0.27 TCGA-G3-AAV1-01 16 3349506 3349506 T C TIGD7 Missense_Mutation p.K370R 0.03 tolerated(0.29) possibly_damaging(0.894) TCGA-G3-AAV1-01 16 71101182 71101182 G A HYDIN Intron 0.54 TCGA-G3-AAV1-01 17 59958425 59958425 G A INTS2 Missense_Mutation p.R741W 0.30 tolerated(0.1) probably_damaging(0.994) TCGA-G3-AAV1-01 17 61660940 61660940 G T DCAF7 Intron 0.55 TCGA-G3-AAV1-01 17 62502384 62502384 G T DDX5 5'UTR 0.29 TCGA-G3-AAV1-01 17 76100877 76100877 C T TNRC6C Missense_Mutation p.P1711L 0.18 deleterious(0) unknown(0) TCGA-G3-AAV1-01 18 3100192 3100192 C T MYOM1 Missense_Mutation p.R1231H 0.26 deleterious(0) probably_damaging(0.972) TCGA-G3-AAV1-01 19 11350522 11350522 A G C19orf80 Missense_Mutation p.Y70C 0.53 deleterious(0.01) possibly_damaging(0.855) TCGA-G3-AAV1-01 19 14591536 14591536 C T GIPC1 Missense_Mutation p.G115S 0.30 tolerated(0.11) probably_damaging(0.998) TCGA-G3-AAV1-01 19 4428721 4428721 G T CHAF1A Missense_Mutation p.A480S 0.55 deleterious(0.02) probably_damaging(0.999) TCGA-G3-AAV1-01 19 4428728 4428728 G T CHAF1A Missense_Mutation p.R482L 0.59 tolerated(1) benign(0.006) TCGA-G3-AAV1-01 1 101194785 101194785 A G VCAM1 Missense_Mutation p.I351V 0.37 tolerated(0.15) benign(0.004) TCGA-G3-AAV1-01 1 118584651 118584651 C T SPAG17 Silent p.E943E 0.29 TCGA-G3-AAV1-01 1 15653709 15653709 G T FHAD1 Intron 0.61 TCGA-G3-AAV1-01 1 179051242 179051242 G A TOR3A 5'UTR 0.44 TCGA-G3-AAV1-01 1 212792748 212792748 G A ATF3 Missense_Mutation p.E133K 0.33 tolerated(0.08) probably_damaging(0.998) TCGA-G3-AAV1-01 1 223116176 223116176 G A DISP1 Missense_Mutation p.S4N 0.04 tolerated_low_confidence(0.16) benign(0.006) TCGA-G3-AAV1-01 1 223962623 223962623 T C CAPN2 3'UTR 0.38 TCGA-G3-AAV1-01 1 24388492 24388492 A G MYOM3 Missense_Mutation p.L1293P 0.79 deleterious(0) probably_damaging(0.999) TCGA-G3-AAV1-01 1 39352191 39352191 T C RHBDL2 Silent p.L299L 0.57 TCGA-G3-AAV1-01 1 46080777 46080777 C T NASP Missense_Mutation p.H587Y 0.46 tolerated(0.1) probably_damaging(0.995) TCGA-G3-AAV1-01 1 93649646 93649646 A G CCDC18 Silent p.E136E 0.41 TCGA-G3-AAV1-01 20 57594619 57594619 C A TUBB1 Missense_Mutation p.N14K 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-G3-AAV1-01 20 57767039 57767039 C T ZNF831 Missense_Mutation p.A322V 0.54 tolerated(0.55) benign(0.071) TCGA-G3-AAV1-01 20 62045484 62045484 C A KCNQ2 Nonsense_Mutation p.E530* 0.47 TCGA-G3-AAV1-01 21 31588254 31588254 G A CLDN8 5'UTR 0.66 TCGA-G3-AAV1-01 22 21343966 21344002 GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA - LZTR1 Splice_Site p.X217_splice 0.33 TCGA-G3-AAV1-01 2 113785625 113785635 TTATTGTGGAA - IL36B Intron 0.28 TCGA-G3-AAV1-01 2 196799358 196799358 C A DNAH7 Missense_Mutation p.W1143L 0.39 deleterious(0) probably_damaging(1) TCGA-G3-AAV1-01 2 198274569 198274569 C A SF3B1 Missense_Mutation p.A277S 0.38 tolerated(0.39) benign(0.01) TCGA-G3-AAV1-01 2 215848388 215848388 G A ABCA12 Silent p.L1455L 0.42 TCGA-G3-AAV1-01 2 241808274 241808274 G T AGXT 5'UTR 0.38 TCGA-G3-AAV1-01 2 26681020 26681020 C A OTOF 3'UTR 0.41 TCGA-G3-AAV1-01 2 74657145 74657145 A G RTKN Missense_Mutation p.F189L 0.37 deleterious(0) probably_damaging(0.999) TCGA-G3-AAV1-01 2 86433255 86433255 G T MRPL35 Missense_Mutation p.A24S 0.40 tolerated(0.05) benign(0.342) TCGA-G3-AAV1-01 3 129239078 129239078 C G IFT122 Missense_Mutation p.C1283W 0.18 deleterious(0) probably_damaging(1) TCGA-G3-AAV1-01 3 160155668 160155669 - T TRIM59 3'UTR 0.11 TCGA-G3-AAV1-01 3 195392967 195392967 G T SDHAP2 RNA 0.18 TCGA-G3-AAV1-01 3 41266098 41266098 A G CTNNB1 Missense_Mutation p.D32G 0.33 deleterious(0.01) possibly_damaging(0.452) TCGA-G3-AAV1-01 3 50404287 50404287 C T CACNA2D2 Missense_Mutation p.R862H 0.13 tolerated(0.25) benign(0.006) TCGA-G3-AAV1-01 3 51432276 51432276 G A RBM15B 3'UTR 0.44 TCGA-G3-AAV1-01 3 62648033 62648033 G T CADPS Silent p.R309R 0.57 TCGA-G3-AAV1-01 3 66430695 66430695 T G LRIG1 Missense_Mutation p.K1092Q 0.34 tolerated_low_confidence(0.06) benign(0.024) TCGA-G3-AAV1-01 3 89259351 89259351 C T EPHA3 Silent p.N165N 0.43 TCGA-G3-AAV1-01 4 155457860 155457860 T G PLRG1 Missense_Mutation p.I508L 0.43 tolerated(0.7) benign(0.049) TCGA-G3-AAV1-01 4 155460301 155460301 T C PLRG1 Silent p.T369T 0.47 TCGA-G3-AAV1-01 4 5620343 5620343 A T EVC2 Missense_Mutation p.H856Q 0.52 tolerated(0.31) benign(0.11) TCGA-G3-AAV1-01 4 69519806 69519806 A G UGT2B15 Missense_Mutation p.M421T 0.02 deleterious(0) possibly_damaging(0.891) TCGA-G3-AAV1-01 4 944244 944244 A T TMEM175 Silent p.T76T 0.47 TCGA-G3-AAV1-01 5 140215718 140215718 T G PCDHA7 Missense_Mutation p.S584A 0.56 tolerated_low_confidence(0.05) benign(0.064) TCGA-G3-AAV1-01 5 161317904 161317904 G C GABRA1 Missense_Mutation p.G235A 0.61 deleterious(0.04) possibly_damaging(0.576) TCGA-G3-AAV1-01 5 174869355 174869355 G A DRD1 Missense_Mutation p.P250S 0.26 tolerated(0.42) benign(0.006) TCGA-G3-AAV1-01 5 93798152 93798152 T C KIAA0825 Missense_Mutation p.H729R 0.59 tolerated(0.45) possibly_damaging(0.742) TCGA-G3-AAV1-01 6 30918818 30918818 G A DPCR1 Silent p.E859E 0.50 TCGA-G3-AAV1-01 6 3140642 3140660 GCCCCGGGTCCAGTGCCCC - BPHL Frame_Shift_Del p.R231* 0.34 TCGA-G3-AAV1-01 6 31500561 31500561 T C DDX39B Missense_Mutation p.N288S 0.45 deleterious(0.02) benign(0.105) TCGA-G3-AAV1-01 7 142880762 142880762 T C TAS2R39 Missense_Mutation p.I84T 0.45 tolerated(0.09) benign(0.366) TCGA-G3-AAV1-01 7 97822810 97822815 CTCTTT A LMTK2 Frame_Shift_Del p.D1011Efs*14 0.44 TCGA-G3-AAV1-01 8 19192209 19192209 T A SH2D4A Silent p.S118S 0.51 TCGA-G3-AAV1-01 8 32505644 32505644 G A NRG1 Intron 0.16 TCGA-G3-AAV1-01 9 15778979 15778979 C A CCDC171 Nonsense_Mutation p.S971* 0.55 TCGA-G3-AAV1-01 9 15778980 15778980 G C CCDC171 Silent p.S971S 0.55 TCGA-G3-AAV1-01 9 740792 740792 A G KANK1 Missense_Mutation p.D1185G 0.45 tolerated(0.33) benign(0.097) TCGA-G3-AAV1-01 9 98011462 98011462 C A FANCC Missense_Mutation p.V38L 0.53 tolerated(1) benign(0) TCGA-G3-AAV1-01 X 135957191 135957191 A G RBMX Intron 0.19 TCGA-G3-AAV2-01 10 101601846 101601846 T A ABCC2 Missense_Mutation p.L1246H 0.45 deleterious(0) probably_damaging(1) TCGA-G3-AAV2-01 10 112341794 112341794 C A SMC3 Silent p.R221R 0.41 TCGA-G3-AAV2-01 10 73767947 73767947 C T CHST3 Silent p.Y386Y 0.41 TCGA-G3-AAV2-01 11 10774265 10774265 T C CTR9 Missense_Mutation p.I31T 0.42 deleterious(0) benign(0.077) TCGA-G3-AAV2-01 11 30033717 30033717 C T KCNA4 Missense_Mutation p.R170H 0.40 tolerated_low_confidence(0.08) probably_damaging(0.964) TCGA-G3-AAV2-01 11 46722545 46722545 G A ZNF408 5'UTR 0.11 TCGA-G3-AAV2-01 11 61110239 61110241 TGA - DAK In_Frame_Del p.M265del 0.36 TCGA-G3-AAV2-01 11 62291321 62291321 T A AHNAK Missense_Mutation p.E3523V 0.36 possibly_damaging(0.791) TCGA-G3-AAV2-01 12 116443800 116443800 T C MED13L Splice_Site p.X782_splice 0.41 TCGA-G3-AAV2-01 12 43821122 43821122 T A ADAMTS20 Missense_Mutation p.N1366Y 0.25 deleterious(0.02) benign(0.382) TCGA-G3-AAV2-01 12 64587568 64587568 T A C12orf66 3'UTR 0.46 TCGA-G3-AAV2-01 13 41885483 41885483 C A NAA16 5'UTR 0.31 TCGA-G3-AAV2-01 14 23511534 23511534 G T PSMB11 Missense_Mutation p.D34Y 0.26 deleterious(0) probably_damaging(0.962) TCGA-G3-AAV2-01 14 24550157 24550157 T G NRL 3'UTR 0.31 TCGA-G3-AAV2-01 14 69259665 69259665 T C ZFP36L1 5'UTR 0.38 TCGA-G3-AAV2-01 15 23931514 23931514 T C NDN Missense_Mutation p.K284R 0.40 tolerated(0.05) possibly_damaging(0.609) TCGA-G3-AAV2-01 16 2522557 2522557 C T NTN3 Silent p.C285C 0.44 TCGA-G3-AAV2-01 16 29913162 29913162 C T ASPHD1 Silent p.A290A 0.42 TCGA-G3-AAV2-01 16 48385505 48385505 A C LONP2 Missense_Mutation p.K784T 0.40 deleterious(0) probably_damaging(0.998) TCGA-G3-AAV2-01 17 39341432 39341432 G C KRTAP4-1 5'UTR 0.30 TCGA-G3-AAV2-01 17 39670412 39670412 C - KRT15 Intron 0.37 TCGA-G3-AAV2-01 18 18625364 18625364 T C ROCK1 Missense_Mutation p.D160G 0.36 deleterious(0) probably_damaging(1) TCGA-G3-AAV2-01 19 14139180 14139180 C A RLN3 Nonsense_Mutation p.S55* 0.43 TCGA-G3-AAV2-01 19 2042023 2042023 G A MKNK2 Missense_Mutation p.A254V 0.25 deleterious(0.01) benign(0.212) TCGA-G3-AAV2-01 19 2042024 2042024 C T MKNK2 Missense_Mutation p.A254T 0.24 deleterious(0.01) possibly_damaging(0.828) TCGA-G3-AAV2-01 19 50100111 50100111 C T PRR12 Missense_Mutation p.P840L 0.50 possibly_damaging(0.504) TCGA-G3-AAV2-01 19 57641581 57641581 G T USP29 Missense_Mutation p.R513L 0.50 deleterious(0.01) possibly_damaging(0.815) TCGA-G3-AAV2-01 19 6707900 6707900 G A C3 Missense_Mutation p.P629L 0.39 deleterious(0.01) benign(0.1) TCGA-G3-AAV2-01 1 1266805 1266805 A C TAS1R3 Missense_Mutation p.Q27P 0.37 tolerated(0.24) benign(0.177) TCGA-G3-AAV2-01 1 144867973 144867973 A T PDE4DIP Silent p.S1822S 0.16 TCGA-G3-AAV2-01 1 14925346 14925361 GGCGCTGCCGGTGCCT AGC KAZN 5'UTR 0.39 TCGA-G3-AAV2-01 1 151260390 151260390 C T ZNF687 Silent p.A541A 0.39 TCGA-G3-AAV2-01 1 15772242 15772242 G T CTRC Nonsense_Mutation p.E264* 0.51 TCGA-G3-AAV2-01 1 159826324 159826324 C G VSIG8 Silent p.V254V 0.75 TCGA-G3-AAV2-01 1 16902833 16902833 C G NBPF1 Missense_Mutation p.G683A 0.07 deleterious(0.02) probably_damaging(0.986) TCGA-G3-AAV2-01 1 213031877 213031877 G A FLVCR1 Missense_Mutation p.G28D 0.50 tolerated_low_confidence(0.68) benign(0.001) TCGA-G3-AAV2-01 1 228494675 228494675 C T OBSCN Silent p.C4957C 0.24 TCGA-G3-AAV2-01 1 246811256 246811256 T A CNST Missense_Mutation p.S585T 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-G3-AAV2-01 1 43852493 43852529 TGGGGATGGGGCAGCAAGGCAGTGACTCAGTCCAACC - MED8 Splice_Site p.X137_splice 0.43 TCGA-G3-AAV2-01 1 82450308 82450308 C T LPHN2 Silent p.C1091C 0.41 TCGA-G3-AAV2-01 20 47592685 47592685 A G ARFGEF2 Missense_Mutation p.Q636R 0.42 tolerated(0.06) benign(0.155) TCGA-G3-AAV2-01 20 61391754 61391755 - C NTSR1 3'UTR 0.40 TCGA-G3-AAV2-01 21 41033065 41033065 G T B3GALT5 Missense_Mutation p.Q193H 0.07 tolerated(0.06) benign(0.009) TCGA-G3-AAV2-01 21 44324122 44324122 C T NDUFV3 Silent p.L334L 0.74 TCGA-G3-AAV2-01 22 41568575 41568575 T A EP300 Missense_Mutation p.W1509R 0.51 probably_damaging(1) TCGA-G3-AAV2-01 22 43976358 43976358 G A EFCAB6 Silent p.L1072L 0.35 TCGA-G3-AAV2-01 22 46792558 46792558 C T CELSR1 Silent p.P1929P 0.05 TCGA-G3-AAV2-01 2 101437534 101437534 G T NPAS2 Intron 0.45 TCGA-G3-AAV2-01 2 179413257 179413257 A G TTN Silent p.S31032S 0.37 TCGA-G3-AAV2-01 2 179519705 179523961 2:179519705-179523961 - TTN large deletion p.X12436_splice 0.20 TCGA-G3-AAV2-01 2 24344139 24344139 T G PFN4 Missense_Mutation p.N50T 0.37 tolerated(0.66) benign(0.079) TCGA-G3-AAV2-01 3 111923076 111923076 G A SLC9C1 Missense_Mutation p.R721C 0.40 deleterious(0.03) benign(0.176) TCGA-G3-AAV2-01 3 127393211 127393211 G C ABTB1 Intron 0.35 TCGA-G3-AAV2-01 3 195017930 195017930 T A ACAP2 Missense_Mutation p.Q492H 0.30 tolerated(0.59) benign(0.008) TCGA-G3-AAV2-01 3 41266136 41266136 T C CTNNB1 Missense_Mutation p.S45P 0.58 deleterious(0) probably_damaging(0.939) TCGA-G3-AAV2-01 3 50645253 50645253 T C CISH Missense_Mutation p.K205E 0.36 tolerated(0.32) benign(0.135) TCGA-G3-AAV2-01 3 54930804 54930804 A T CACNA2D3 Missense_Mutation p.N759Y 0.27 deleterious(0.01) benign(0.352) TCGA-G3-AAV2-01 3 97851822 97851822 T A OR5H1 Missense_Mutation p.L94H 0.39 deleterious(0.01) possibly_damaging(0.71) TCGA-G3-AAV2-01 4 108866371 108866371 A G CYP2U1 Missense_Mutation p.S246G 0.47 tolerated(0.33) benign(0.008) TCGA-G3-AAV2-01 4 108866384 108866384 A C CYP2U1 Missense_Mutation p.K250T 0.45 tolerated(0.45) benign(0.014) TCGA-G3-AAV2-01 4 148605243 148605243 G A PRMT10 5'UTR 0.54 TCGA-G3-AAV2-01 5 112720863 112720863 C A MCC Missense_Mutation p.V73L 0.32 tolerated_low_confidence(0.33) possibly_damaging(0.893) TCGA-G3-AAV2-01 5 125759216 125759216 C G GRAMD3 Intron 0.44 TCGA-G3-AAV2-01 5 176002561 176002561 C T CDHR2 Missense_Mutation p.P275S 0.46 tolerated(0.62) benign(0.155) TCGA-G3-AAV2-01 5 36182146 36182146 A T SKP2 3'UTR 0.59 TCGA-G3-AAV2-01 6 114378489 114378489 G A HS3ST5 Missense_Mutation p.R325C 0.41 tolerated(0.15) benign(0.009) TCGA-G3-AAV2-01 6 129663536 129663536 G C LAMA2 Missense_Mutation p.G1454R 0.39 deleterious(0) probably_damaging(1) TCGA-G3-AAV2-01 6 136709604 136709604 C A MAP7 Missense_Mutation p.Q173H 0.36 deleterious(0.02) possibly_damaging(0.677) TCGA-G3-AAV2-01 6 163148801 163148801 A T PARK2 5'UTR 0.38 TCGA-G3-AAV2-01 6 29054623 29054623 T C OR2B3 Missense_Mutation p.I135V 0.38 tolerated(0.08) benign(0.014) TCGA-G3-AAV2-01 6 30573978 30573980 TTC - PPP1R10 In_Frame_Del p.K225del 0.30 TCGA-G3-AAV2-01 7 132192343 132192343 C A PLXNA4 Silent p.R370R 0.31 TCGA-G3-AAV2-01 7 136588032 136588032 G A CHRM2 Intron 0.45 TCGA-G3-AAV2-01 7 143057264 143057264 C T FAM131B Intron 0.09 TCGA-G3-AAV2-01 8 113331084 113331084 C A CSMD3 Missense_Mutation p.A2448S 0.19 tolerated(0.28) benign(0.099) TCGA-G3-AAV2-01 8 113331118 113331118 C A CSMD3 Silent p.T2436T 0.22 TCGA-G3-AAV2-01 8 15480598 15480598 G T TUSC3 Missense_Mutation p.A50S 0.06 tolerated(1) benign(0.003) TCGA-G3-AAV2-01 9 111625852 111625852 T A ACTL7A Missense_Mutation p.V417D 0.38 deleterious(0) probably_damaging(0.961) TCGA-G3-AAV2-01 9 127115844 127115844 C - PSMB7 3'UTR 0.29 TCGA-G3-AAV2-01 9 130145772 130145772 A G GARNL3 Silent p.Q739Q 0.43 TCGA-G3-AAV2-01 X 101139682 101139682 C T ZMAT1 Silent p.K239K 0.46 TCGA-G3-AAV2-01 X 1401418 1401418 A G CSF2RA 5'Flank 0.48 TCGA-G3-AAV2-01 X 78426502 78426502 A G GPR174 5'UTR 0.32 TCGA-G3-AAV2-01 X 78426503 78426503 T G GPR174 5'UTR 0.35 TCGA-G3-AAV3-01 10 32740800 32740801 - A CCDC7 Frame_Shift_Ins p.L78Tfs*5 0.20 TCGA-G3-AAV3-01 10 43292088 43292088 G A BMS1 Missense_Mutation p.E466K 0.20 tolerated(0.17) benign(0.146) TCGA-G3-AAV3-01 10 48370493 48370493 G A ZNF488 5'UTR 0.06 TCGA-G3-AAV3-01 10 6504265 6504265 C A PRKCQ Missense_Mutation p.R503M 0.23 deleterious(0) probably_damaging(0.997) TCGA-G3-AAV3-01 10 93558604 93558604 G T TNKS2 Missense_Mutation p.D53Y 0.28 deleterious(0) probably_damaging(0.992) TCGA-G3-AAV3-01 11 121477964 121477964 A T SORL1 Nonsense_Mutation p.K1711* 0.30 TCGA-G3-AAV3-01 11 125774388 125774388 G T DDX25 5'UTR 0.26 TCGA-G3-AAV3-01 11 134131244 134131244 G C ACAD8 Missense_Mutation p.G306A 0.24 deleterious(0.05) benign(0.422) TCGA-G3-AAV3-01 11 17527406 17527406 A G USH1C Missense_Mutation p.Y702H 0.23 tolerated_low_confidence(0.42) benign(0) TCGA-G3-AAV3-01 11 404567 404567 T A PKP3 Nonstop_Mutation p.*798Kext*? 0.20 TCGA-G3-AAV3-01 11 47281483 47281483 A T NR1H3 Missense_Mutation p.E62V 0.23 tolerated(0.09) benign(0.001) TCGA-G3-AAV3-01 11 47594682 47594682 G T KBTBD4 Silent p.R469R 0.04 TCGA-G3-AAV3-01 11 5537290 5537290 T A UBQLNL Missense_Mutation p.T128S 0.30 tolerated(0.25) benign(0.343) TCGA-G3-AAV3-01 11 62910859 62910859 G A SLC22A24 Silent p.I131I 0.18 TCGA-G3-AAV3-01 11 8671412 8671412 T A TRIM66 Missense_Mutation p.K11M 0.21 deleterious(0) probably_damaging(0.997) TCGA-G3-AAV3-01 12 111066708 111066708 T C TCTN1 Silent p.T203T 0.31 TCGA-G3-AAV3-01 12 113306371 113306371 C A RPH3A Missense_Mutation p.P194H 0.30 deleterious(0.03) possibly_damaging(0.572) TCGA-G3-AAV3-01 12 116446438 116446438 T A MED13L Missense_Mutation p.T594S 0.29 tolerated_low_confidence(1) unknown(0) TCGA-G3-AAV3-01 12 122734446 122734446 G C VPS33A Silent p.L249L 0.18 TCGA-G3-AAV3-01 12 122983386 122983387 AG - ZCCHC8 Frame_Shift_Del p.L77Dfs*12 0.20 TCGA-G3-AAV3-01 12 124360035 124360035 C A DNAH10 Silent p.T2614T 0.20 TCGA-G3-AAV3-01 12 124835216 124835216 C T NCOR2 Missense_Mutation p.R1254H 0.26 probably_damaging(0.993) TCGA-G3-AAV3-01 12 14995920 14995920 G A ART4 Missense_Mutation p.P43L 0.04 deleterious(0.04) possibly_damaging(0.804) TCGA-G3-AAV3-01 12 47160445 47160458 AACCATTTCCAATA CACC SLC38A4 3'UTR 0.14 TCGA-G3-AAV3-01 12 50575756 50575756 C A LIMA1 Missense_Mutation p.R403L 0.20 deleterious(0) probably_damaging(0.99) TCGA-G3-AAV3-01 12 64202488 64202488 G A TMEM5 Silent p.K316K 0.28 TCGA-G3-AAV3-01 12 922935 922935 G A WNK1 Missense_Mutation p.C296Y 0.16 tolerated(0.06) unknown(0) TCGA-G3-AAV3-01 12 97102412 97102412 C A C12orf55 Silent p.G2185G 0.20 TCGA-G3-AAV3-01 13 110435305 110435305 C T IRS2 Silent p.P1032P 0.07 TCGA-G3-AAV3-01 13 114789758 114789758 A T RASA3 Missense_Mutation p.I226N 0.24 deleterious(0) probably_damaging(0.939) TCGA-G3-AAV3-01 13 40362736 40362736 A G RNY4P14 5'Flank 0.25 TCGA-G3-AAV3-01 13 88331524 88331524 G C SLITRK5 3'UTR 0.22 TCGA-G3-AAV3-01 14 105270490 105270491 - TGTG ZBTB42 3'UTR 0.12 TCGA-G3-AAV3-01 14 37641486 37641486 C T SLC25A21 Missense_Mutation p.G24S 0.20 tolerated(0.06) probably_damaging(0.963) TCGA-G3-AAV3-01 15 52416719 52416719 G A GNB5 Missense_Mutation p.S376F 0.19 deleterious(0) probably_damaging(1) TCGA-G3-AAV3-01 15 59186734 59186734 T A SLTM Missense_Mutation p.K425N 0.24 deleterious(0) unknown(0) TCGA-G3-AAV3-01 15 88678582 88678582 C A NTRK3 Missense_Mutation p.E318D 0.23 tolerated(0.18) benign(0.002) TCGA-G3-AAV3-01 15 91832791 91832792 - T SV2B Frame_Shift_Ins p.G586Wfs*4 0.12 TCGA-G3-AAV3-01 16 4747019 4747019 G C ANKS3 Intron 0.25 TCGA-G3-AAV3-01 16 50357604 50357604 T C BRD7 Missense_Mutation p.H446R 0.24 tolerated(0.53) benign(0.268) TCGA-G3-AAV3-01 16 58559196 58559196 G T CNOT1 Missense_Mutation p.T2224N 0.23 deleterious(0.02) benign(0.139) TCGA-G3-AAV3-01 16 71318721 71318721 T C CMTR2 Missense_Mutation p.H368R 0.27 deleterious(0.04) possibly_damaging(0.67) TCGA-G3-AAV3-01 16 777615 777615 G T HAGHL Splice_Site p.X35_splice 0.27 TCGA-G3-AAV3-01 16 86613580 86613580 A T FOXL1 3'UTR 0.25 TCGA-G3-AAV3-01 16 88496981 88496981 G T ZNF469 Missense_Mutation p.D1035Y 0.19 probably_damaging(0.94) TCGA-G3-AAV3-01 17 2604933 2604933 G A CLUH Silent p.L202L 0.16 TCGA-G3-AAV3-01 17 30687931 30687931 G A ZNF207 Missense_Mutation p.G166S 0.20 deleterious(0.04) probably_damaging(0.931) TCGA-G3-AAV3-01 17 34001338 34001338 T A AP2B1 Missense_Mutation p.N774K 0.19 deleterious(0) probably_damaging(0.957) TCGA-G3-AAV3-01 17 43321209 43321209 C T FMNL1 Silent p.F755F 0.14 TCGA-G3-AAV3-01 17 4859417 4859417 C A ENO3 Nonsense_Mutation p.S349* 0.15 TCGA-G3-AAV3-01 17 80043185 80043185 G A FASN Missense_Mutation p.P1406S 0.30 tolerated(0.75) benign(0.004) TCGA-G3-AAV3-01 18 21860862 21860862 T A OSBPL1A Nonsense_Mutation p.R409* 0.17 TCGA-G3-AAV3-01 18 2747624 2747624 T A SMCHD1 Silent p.L1302L 0.20 TCGA-G3-AAV3-01 19 4171378 4171378 A T CREB3L3 Splice_Site p.X326_splice 0.33 TCGA-G3-AAV3-01 19 51983676 51983676 G A CEACAM18 Missense_Mutation p.A109T 0.14 tolerated(0.57) benign(0.069) TCGA-G3-AAV3-01 19 54711353 54711354 - GGGG RPS9 Frame_Shift_Ins p.R169Wfs*? 0.13 TCGA-G3-AAV3-01 19 6496156 6496156 G A TUBB4A Silent p.D118D 0.20 TCGA-G3-AAV3-01 19 7807911 7807911 G A CD209 3'UTR 0.24 TCGA-G3-AAV3-01 19 7807912 7807912 G A CD209 3'UTR 0.24 TCGA-G3-AAV3-01 19 8386229 8386229 G A NDUFA7 Missense_Mutation p.T5I 0.17 deleterious(0) probably_damaging(0.991) TCGA-G3-AAV3-01 1 109544870 109544870 T C WDR47 Missense_Mutation p.N478S 0.23 tolerated(0.37) benign(0.014) TCGA-G3-AAV3-01 1 151079530 151079530 A G GABPB2 Missense_Mutation p.I252V 0.15 tolerated(1) benign(0.001) TCGA-G3-AAV3-01 1 160000854 160000854 C A PIGM Missense_Mutation p.A226S 0.15 tolerated(0.73) benign(0.011) TCGA-G3-AAV3-01 1 16785529 16785529 C G NECAP2 3'UTR 0.25 TCGA-G3-AAV3-01 1 193045716 193045716 C T TROVE2 Missense_Mutation p.P296L 0.20 tolerated(0.15) possibly_damaging(0.605) TCGA-G3-AAV3-01 1 210637884 210637884 G T HHAT Missense_Mutation p.V299L 0.14 tolerated(0.1) benign(0.222) TCGA-G3-AAV3-01 1 226027596 226027596 C T EPHX1 Silent p.L263L 0.39 TCGA-G3-AAV3-01 1 247978099 247978099 C - OR14A16 3'Flank 0.18 TCGA-G3-AAV3-01 1 248525799 248525799 T C OR2T4 Missense_Mutation p.V306A 0.21 deleterious(0.03) benign(0.068) TCGA-G3-AAV3-01 1 249212344 249212344 G T PGBD2 Missense_Mutation p.A521S 0.17 deleterious(0.01) benign(0.18) TCGA-G3-AAV3-01 1 40981862 40981862 C G EXO5 3'Flank 0.24 TCGA-G3-AAV3-01 20 47604882 47604882 C T ARFGEF2 Missense_Mutation p.A773V 0.17 deleterious(0) probably_damaging(0.994) TCGA-G3-AAV3-01 20 57289000 57289000 G A NPEPL1 Missense_Mutation p.A385T 0.21 deleterious(0) probably_damaging(0.983) TCGA-G3-AAV3-01 20 61945549 61945549 G T COL20A1 Missense_Mutation p.Q828H 0.05 tolerated(0.12) benign(0.002) TCGA-G3-AAV3-01 21 30699119 30699119 T - BACH1 Frame_Shift_Del p.L326Yfs*10 0.23 TCGA-G3-AAV3-01 2 141625228 141625228 T C LRP1B Missense_Mutation p.S1504G 0.19 benign(0.006) TCGA-G3-AAV3-01 2 1459868 1459868 T A TPO Missense_Mutation p.H211Q 0.19 tolerated(1) benign(0.002) TCGA-G3-AAV3-01 2 1459869 1459869 G T TPO Missense_Mutation p.V212F 0.19 deleterious(0) possibly_damaging(0.833) TCGA-G3-AAV3-01 2 168107938 168107938 T A XIRP2 Missense_Mutation p.S3346T 0.21 benign(0.119) TCGA-G3-AAV3-01 2 178098803 178098803 C G NFE2L2 Missense_Mutation p.G81A 0.23 deleterious(0) probably_damaging(0.999) TCGA-G3-AAV3-01 2 179640232 179640232 C A TTN Missense_Mutation p.R2120L 0.17 TCGA-G3-AAV3-01 2 216198147 216198147 A T ATIC Missense_Mutation p.T297S 0.18 tolerated(0.85) benign(0.003) TCGA-G3-AAV3-01 2 217542908 217542908 G A IGFBP5 Missense_Mutation p.A205V 0.21 tolerated(0.1) benign(0.155) TCGA-G3-AAV3-01 2 220466724 220466724 C T STK11IP Silent p.P130P 0.26 TCGA-G3-AAV3-01 2 239184515 239184515 T A PER2 Missense_Mutation p.D106V 0.21 deleterious(0) possibly_damaging(0.851) TCGA-G3-AAV3-01 2 26502123 26502123 C G HADHB Missense_Mutation p.L251V 0.21 deleterious(0.04) possibly_damaging(0.626) TCGA-G3-AAV3-01 2 45169240 45169240 G A SIX3 5'UTR 0.19 TCGA-G3-AAV3-01 2 61349521 61349521 A G KIAA1841 3'UTR 0.25 TCGA-G3-AAV3-01 3 11078828 11078828 C T SLC6A1 3'UTR 0.21 TCGA-G3-AAV3-01 3 119328406 119328406 A T PLA1A Missense_Mutation p.Q182L 0.20 tolerated(0.06) benign(0.378) TCGA-G3-AAV3-01 3 170732356 170732356 T C SLC2A2 Silent p.Q91Q 0.26 TCGA-G3-AAV3-01 3 3887129 3887129 A C LRRN1 Missense_Mutation p.L268F 0.14 deleterious(0) probably_damaging(1) TCGA-G3-AAV3-01 3 41266097 41266097 G T CTNNB1 Missense_Mutation p.D32Y 0.29 deleterious(0) probably_damaging(0.992) TCGA-G3-AAV3-01 3 49162791 49162814 GGGAATCCCCACTGGCCACGCTGG - LAMB2 In_Frame_Del p.Q865_P872del 0.13 TCGA-G3-AAV3-01 3 52889459 52889459 G A TMEM110 Silent p.L54L 0.16 TCGA-G3-AAV3-01 3 56705673 56705673 C A FAM208A Missense_Mutation p.K175N 0.24 deleterious(0) probably_damaging(0.991) TCGA-G3-AAV3-01 4 40244918 40244918 C G RHOH 5'UTR 0.06 TCGA-G3-AAV3-01 4 82073196 82073196 G A PRKG2 Nonsense_Mutation p.Q335* 0.29 TCGA-G3-AAV3-01 4 8605798 8605798 A T CPZ Missense_Mutation p.R198W 0.24 deleterious(0.01) possibly_damaging(0.886) TCGA-G3-AAV3-01 4 90033977 90033977 A C TIGD2 5'UTR 0.29 TCGA-G3-AAV3-01 5 140263516 140263516 G A PCDHA13 Missense_Mutation p.V555M 0.25 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-G3-AAV3-01 5 140555222 140555222 T C PCDHB7 3'UTR 0.13 TCGA-G3-AAV3-01 5 17354671 17354671 G T CTD-2139B15.2 RNA 0.21 TCGA-G3-AAV3-01 5 70805742 70805742 A T BDP1 Missense_Mutation p.K941N 0.19 deleterious(0.02) benign(0) TCGA-G3-AAV3-01 6 112430681 112430681 C T LAMA4 Missense_Mutation p.V1811I 0.35 deleterious(0.01) probably_damaging(0.954) TCGA-G3-AAV3-01 6 151130378 151130378 C G PLEKHG1 Missense_Mutation p.I350M 0.20 deleterious(0) benign(0.194) TCGA-G3-AAV3-01 6 151907029 151907029 C A CCDC170 Silent p.V366V 0.18 TCGA-G3-AAV3-01 6 16238870 16238870 G A GMPR 5'UTR 0.33 TCGA-G3-AAV3-01 6 25420378 25420378 C T LRRC16A Nonsense_Mutation p.R59* 0.15 TCGA-G3-AAV3-01 6 27839711 27839711 G A HIST1H3I Missense_Mutation p.A128V 0.20 deleterious_low_confidence(0) benign(0.092) TCGA-G3-AAV3-01 6 29395427 29395427 T C OR11A1 5'UTR 0.09 TCGA-G3-AAV3-01 6 37414111 37414111 C A CMTR1 Missense_Mutation p.S110R 0.17 tolerated(0.06) benign(0.175) TCGA-G3-AAV3-01 7 107875094 107875094 C G NRCAM Missense_Mutation p.D55H 0.23 deleterious(0) probably_damaging(0.976) TCGA-G3-AAV3-01 7 120655805 120655805 T C CPED1 Silent p.L112L 0.19 TCGA-G3-AAV3-01 7 38500941 38500941 A T AMPH Missense_Mutation p.I320N 0.09 deleterious(0) probably_damaging(0.999) TCGA-G3-AAV3-01 7 47451383 47451383 T - TNS3 Frame_Shift_Del p.N222Tfs*15 0.16 TCGA-G3-AAV3-01 7 92735147 92735147 C A SAMD9 Missense_Mutation p.M88I 0.24 tolerated(0.18) benign(0) TCGA-G3-AAV3-01 9 130420705 130420705 T C STXBP1 Missense_Mutation p.V74A 0.22 deleterious(0) benign(0.053) TCGA-G3-AAV3-01 9 138387103 138387103 A T C9orf116 3'UTR 0.29 TCGA-G3-AAV3-01 9 19316642 19316642 T G DENND4C Missense_Mutation p.S538A 0.17 tolerated(0.95) possibly_damaging(0.714) TCGA-G3-AAV3-01 9 97084601 97084601 G A NUTM2F Nonsense_Mutation p.R242* 0.22 TCGA-G3-AAV3-01 X 110544584 110544584 T C DCX 3'UTR 0.33 TCGA-G3-AAV3-01 X 122387320 122387320 G A GRIA3 Silent p.L145L 0.32 TCGA-G3-AAV3-01 X 148564375 148564375 C T IDS Missense_Mutation p.A308T 0.22 deleterious(0.03) possibly_damaging(0.817) TCGA-G3-AAV3-01 X 24752010 24752010 A T POLA1 Intron 0.29 TCGA-G3-AAV3-01 X 75649655 75649655 C A MAGEE1 Missense_Mutation p.D444E 0.26 tolerated(0.17) possibly_damaging(0.773) TCGA-G3-AAV3-01 X 90692240 90692240 T A PABPC5 3'UTR 0.21 TCGA-G3-AAV4-01 10 120896349 120896349 G T FAM45A 3'UTR 0.67 TCGA-G3-AAV4-01 10 120896350 120896350 A T FAM45A 3'UTR 0.69 TCGA-G3-AAV4-01 10 55955639 55955639 T A PCDH15 Missense_Mutation p.D370V 0.32 tolerated(0.26) probably_damaging(0.993) TCGA-G3-AAV4-01 10 91066641 91066657 AGAAAGTTACTGGAACT CG IFIT2 In_Frame_Del p.K311_L315del 0.26 TCGA-G3-AAV4-01 10 91066657 91066657 T G IFIT2 Missense_Mutation p.L315R 0.23 deleterious(0) possibly_damaging(0.729) TCGA-G3-AAV4-01 11 104897575 104897575 G A CASP1 Silent p.F370F 0.07 TCGA-G3-AAV4-01 11 129814881 129814881 C A PRDM10 Missense_Mutation p.A183S 0.47 tolerated(0.81) benign(0) TCGA-G3-AAV4-01 11 134018672 134018672 G A JAM3 Missense_Mutation p.G286R 0.57 deleterious(0.01) possibly_damaging(0.536) TCGA-G3-AAV4-01 11 2906108 2906108 C T CDKN1C Silent p.P204P 0.42 TCGA-G3-AAV4-01 11 33891217 33891217 C A LMO2 Intron 0.43 TCGA-G3-AAV4-01 11 60470924 60470924 A G MS4A8 Missense_Mutation p.Y98C 0.43 deleterious(0) probably_damaging(1) TCGA-G3-AAV4-01 11 62285972 62285972 A C AHNAK Missense_Mutation p.L5306W 0.43 probably_damaging(0.981) TCGA-G3-AAV4-01 11 62285997 62285997 A T AHNAK Missense_Mutation p.S5298T 0.44 probably_damaging(0.997) TCGA-G3-AAV4-01 11 95712358 95712358 G A MAML2 Silent p.G1075G 0.37 TCGA-G3-AAV4-01 12 101767198 101767198 A G UTP20 Missense_Mutation p.R2300G 0.46 deleterious(0) probably_damaging(0.999) TCGA-G3-AAV4-01 12 120933949 120933949 C G DYNLL1 Intron 0.70 TCGA-G3-AAV4-01 12 46230518 46230545 TTGTAGAAGGTACATCAGGAGAATGGAT - ARID2 Splice_Site p.X258_splice 0.37 TCGA-G3-AAV4-01 12 46243941 46243941 C T ARID2 Nonsense_Mutation p.Q679* 0.39 TCGA-G3-AAV4-01 12 88447463 88447463 G T CEP290 Missense_Mutation p.N2365K 0.35 benign(0.1) TCGA-G3-AAV4-01 13 100193842 100193842 T A TM9SF2 Missense_Mutation p.F313Y 0.52 deleterious(0) probably_damaging(0.974) TCGA-G3-AAV4-01 13 25068806 25068806 C T PARP4 Missense_Mutation p.E216K 0.31 tolerated(0.11) benign(0.045) TCGA-G3-AAV4-01 14 102430961 102430961 C T DYNC1H1 5'UTR 0.50 TCGA-G3-AAV4-01 14 106845602 106845602 C A IGHV3-35 Silent p.V24V 0.46 TCGA-G3-AAV4-01 14 56139682 56139682 A G KTN1 Silent p.L1213L 0.42 TCGA-G3-AAV4-01 14 68028676 68028676 G A PLEKHH1 Silent p.E143E 0.55 TCGA-G3-AAV4-01 14 77493785 77493785 C T IRF2BPL Silent p.Q117Q 0.15 TCGA-G3-AAV4-01 16 19132079 19132079 C T ITPRIPL2 3'UTR 0.41 TCGA-G3-AAV4-01 16 2026919 2026919 C T TBL3 Missense_Mutation p.P466L 0.54 tolerated(0.12) benign(0.002) TCGA-G3-AAV4-01 16 30021471 30021471 G T DOC2A Missense_Mutation p.P25T 0.40 deleterious(0) probably_damaging(0.983) TCGA-G3-AAV4-01 16 3064490 3064490 A G CLDN9 3'UTR 0.40 TCGA-G3-AAV4-01 16 74378832 74378832 T G RP11-252A24.2 RNA 0.53 TCGA-G3-AAV4-01 16 89777150 89777150 C A VPS9D1 Missense_Mutation p.D368Y 0.10 deleterious(0.01) possibly_damaging(0.808) TCGA-G3-AAV4-01 17 30669031 30669031 T C C17orf75 Missense_Mutation p.Y43C 0.27 tolerated(0.1) benign(0.083) TCGA-G3-AAV4-01 17 31323984 31323984 C T SPACA3 Missense_Mutation p.P156L 0.47 tolerated(0.31) benign(0.03) TCGA-G3-AAV4-01 17 35913872 35913872 A T SYNRG Silent p.S651S 0.43 TCGA-G3-AAV4-01 17 55055545 55055545 C G SCPEP1 Missense_Mutation p.P9A 0.60 tolerated_low_confidence(0.66) unknown(0) TCGA-G3-AAV4-01 17 7578177 7578177 C T TP53 Silent p.E224E 0.75 TCGA-G3-AAV4-01 17 7695575 7695575 G A DNAH2 Silent p.T2353T 0.71 TCGA-G3-AAV4-01 17 80038356 80038356 C T FASN Missense_Mutation p.V2313M 0.50 deleterious(0) probably_damaging(0.998) TCGA-G3-AAV4-01 17 9808459 9808459 G T RCVRN Silent p.I13I 0.90 TCGA-G3-AAV4-01 18 14542926 14542926 C A POTEC Missense_Mutation p.G74W 0.21 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-G3-AAV4-01 19 11594956 11594956 C T ZNF653 Missense_Mutation p.G524D 0.09 tolerated(0.24) probably_damaging(0.974) TCGA-G3-AAV4-01 19 17448408 17448408 A C GTPBP3 5'UTR 0.47 TCGA-G3-AAV4-01 19 21608178 21608178 G T ZNF493 3'UTR 0.48 TCGA-G3-AAV4-01 19 35175888 35175888 C T ZNF302 Missense_Mutation p.R316C 0.33 deleterious(0.01) possibly_damaging(0.764) TCGA-G3-AAV4-01 19 37734077 37734077 G C ZNF383 Missense_Mutation p.K313N 0.39 tolerated(0.18) probably_damaging(0.999) TCGA-G3-AAV4-01 19 38795598 38795598 C T C19orf33 Silent p.P105P 0.22 TCGA-G3-AAV4-01 19 40424388 40424388 G T FCGBP Missense_Mutation p.D605E 0.08 possibly_damaging(0.855) TCGA-G3-AAV4-01 19 4202880 4202880 G A ANKRD24 Silent p.V141V 0.42 TCGA-G3-AAV4-01 19 46094909 46094932 CAGCGGCAGCGTGCAGATGTACAG - GPR4 In_Frame_Del p.L65_L72del 0.30 TCGA-G3-AAV4-01 19 49110937 49110937 A G SPACA4 3'UTR 0.32 TCGA-G3-AAV4-01 19 49899026 49899026 G A CCDC155 Silent p.G112G 0.47 TCGA-G3-AAV4-01 19 51170472 51170472 G T SHANK1 Nonsense_Mutation p.S1582* 0.19 TCGA-G3-AAV4-01 19 52023258 52023258 G T SIGLEC6 3'UTR 0.07 TCGA-G3-AAV4-01 19 52222893 52222893 C A HAS1 Missense_Mutation p.D90Y 0.51 deleterious(0.03) benign(0.29) TCGA-G3-AAV4-01 19 54598252 54598252 G T OSCAR 3'UTR 0.50 TCGA-G3-AAV4-01 19 55995321 55995321 G T ZNF628 Missense_Mutation p.D921Y 0.44 deleterious(0) unknown(0) TCGA-G3-AAV4-01 19 57867488 57867488 T A ZNF304 Missense_Mutation p.L84H 0.41 tolerated(0.06) benign(0.319) TCGA-G3-AAV4-01 19 57922725 57922725 G A ZNF17 5'UTR 0.47 TCGA-G3-AAV4-01 19 58370043 58370043 C G CTD-2583A14.10 Missense_Mutation p.P88R 0.20 tolerated(0.2) possibly_damaging(0.529) TCGA-G3-AAV4-01 19 9066696 9066696 A T MUC16 Missense_Mutation p.M6917K 0.47 unknown(0) TCGA-G3-AAV4-01 1 111061741 111061741 G A KCNA10 5'UTR 0.45 TCGA-G3-AAV4-01 1 150936503 150936503 T G SETDB1 Missense_Mutation p.N1234K 0.42 deleterious(0) probably_damaging(0.996) TCGA-G3-AAV4-01 1 152285059 152285059 G T FLG Missense_Mutation p.A768D 0.49 probably_damaging(0.997) TCGA-G3-AAV4-01 1 171311094 171311094 C A FMO4 3'UTR 0.31 TCGA-G3-AAV4-01 1 19071524 19071524 G T PAX7 3'UTR 0.07 TCGA-G3-AAV4-01 1 201123075 201123075 C G TMEM9 5'UTR 0.51 TCGA-G3-AAV4-01 1 204438438 204438438 T C PIK3C2B Missense_Mutation p.I165V 0.33 tolerated_low_confidence(0.42) benign(0.034) TCGA-G3-AAV4-01 1 212193463 212193463 C T INTS7 Splice_Site p.X124_splice 0.51 TCGA-G3-AAV4-01 1 213046020 213046020 C T FLVCR1 Missense_Mutation p.A295V 0.47 tolerated(1) benign(0.004) TCGA-G3-AAV4-01 1 229641905 229641905 C T NUP133 Silent p.R61R 0.38 TCGA-G3-AAV4-01 1 236714176 236714176 T C HEATR1 3'UTR 0.39 TCGA-G3-AAV4-01 1 25747328 25747328 C A RHCE 5'UTR 0.35 TCGA-G3-AAV4-01 1 26349593 26349593 A G EXTL1 Silent p.Q152Q 0.37 TCGA-G3-AAV4-01 1 28157519 28157519 G A PPP1R8 Intron 0.04 TCGA-G3-AAV4-01 1 3816802 3816802 C A C1orf174 5'UTR 0.47 TCGA-G3-AAV4-01 1 45469948 45469948 C T HECTD3 Silent p.E748E 0.45 TCGA-G3-AAV4-01 1 46654596 46654596 G T POMGNT1 Missense_Mutation p.P681Q 0.39 benign(0.006) TCGA-G3-AAV4-01 1 54238115 54238115 G A NDC1 Silent p.P616P 0.38 TCGA-G3-AAV4-01 1 70300520 70300520 C T LRRC7 Silent p.A148A 0.47 TCGA-G3-AAV4-01 1 8386007 8386007 C T SLC45A1 Missense_Mutation p.A207V 0.10 deleterious(0) probably_damaging(1) TCGA-G3-AAV4-01 1 84543803 84543803 C T RP11-486G15.2 5'Flank 0.09 TCGA-G3-AAV4-01 1 89251817 89251817 A G PKN2 Missense_Mutation p.N401S 0.39 tolerated(0.05) benign(0.391) TCGA-G3-AAV4-01 20 30381706 30381706 C T TPX2 Missense_Mutation p.P522L 0.40 deleterious(0) possibly_damaging(0.591) TCGA-G3-AAV4-01 20 56139535 56139535 T C PCK1 Intron 0.39 TCGA-G3-AAV4-01 20 61522203 61522203 C T DIDO1 Intron 0.20 TCGA-G3-AAV4-01 21 43221607 43221607 C T PRDM15 Silent p.Q1439Q 0.55 TCGA-G3-AAV4-01 22 26887625 26887625 C T SRRD Missense_Mutation p.S336F 0.51 deleterious_low_confidence(0) possibly_damaging(0.556) TCGA-G3-AAV4-01 22 37964811 37964811 A G CDC42EP1 Missense_Mutation p.D387G 0.41 deleterious_low_confidence(0) unknown(0) TCGA-G3-AAV4-01 22 42608026 42608026 C A TCF20 Nonsense_Mutation p.E1096* 0.43 TCGA-G3-AAV4-01 22 43089164 43089164 C T A4GALT Missense_Mutation p.R265H 0.48 tolerated(0.1) benign(0.037) TCGA-G3-AAV4-01 2 121726367 121726367 G A GLI2 Missense_Mutation p.A241T 0.37 tolerated(0.05) probably_damaging(0.995) TCGA-G3-AAV4-01 2 130739420 130739420 T A RAB6C 3'UTR 0.29 TCGA-G3-AAV4-01 2 130739421 130739421 G A RAB6C 3'UTR 0.30 TCGA-G3-AAV4-01 2 130914804 130914836 AAGCCGCAAGGGCCACCCACCGTTTGAACTCCT TGG SMPD4 Splice_Site p.X401_splice 0.21 TCGA-G3-AAV4-01 2 130914830 130914835 AACTCC - SMPD4 In_Frame_Del p.E401_F403delinsD 0.10 TCGA-G3-AAV4-01 2 131801932 131801932 G A ARHGEF4 Missense_Mutation p.V554M 0.05 deleterious(0) possibly_damaging(0.598) TCGA-G3-AAV4-01 2 135741259 135741259 C A MAP3K19 Missense_Mutation p.G1070V 0.16 deleterious(0) probably_damaging(1) TCGA-G3-AAV4-01 2 135741322 135741322 G C MAP3K19 Missense_Mutation p.S1049C 0.19 deleterious(0.02) possibly_damaging(0.832) TCGA-G3-AAV4-01 2 139428462 139428462 G A NXPH2 3'UTR 0.48 TCGA-G3-AAV4-01 2 145157357 145157357 A G ZEB2 Missense_Mutation p.I466T 0.49 deleterious(0.03) probably_damaging(0.997) TCGA-G3-AAV4-01 2 149864490 149864490 A G KIF5C Missense_Mutation p.D820G 0.48 tolerated(0.06) benign(0.013) TCGA-G3-AAV4-01 2 160755561 160755561 G T LY75-CD302 Missense_Mutation p.P35H 0.67 deleterious(0.01) probably_damaging(0.996) TCGA-G3-AAV4-01 2 183731006 183731006 T C FRZB Missense_Mutation p.Y92C 0.48 deleterious(0) probably_damaging(1) TCGA-G3-AAV4-01 2 197761869 197761869 C A PGAP1 Missense_Mutation p.A305S 0.44 tolerated(0.23) benign(0.044) TCGA-G3-AAV4-01 2 21231070 21231070 G T APOB Missense_Mutation p.F2890L 0.35 benign(0.034) TCGA-G3-AAV4-01 2 230312120 230312120 G A DNER Silent p.A466A 0.44 TCGA-G3-AAV4-01 2 234846104 234846104 C A TRPM8 Missense_Mutation p.T100N 0.45 deleterious(0) probably_damaging(0.997) TCGA-G3-AAV4-01 2 44051474 44051474 A C ABCG5 Missense_Mutation p.I334M 0.60 deleterious(0.03) benign(0.213) TCGA-G3-AAV4-01 2 48809181 48809181 A G STON1-GTF2A1L Missense_Mutation p.Y470C 0.52 tolerated(0.06) benign(0.015) TCGA-G3-AAV4-01 2 68592464 68592464 C G PLEK 5'UTR 0.45 TCGA-G3-AAV4-01 2 6990084 6990084 C T CMPK2 Missense_Mutation p.R416Q 0.33 deleterious(0.01) possibly_damaging(0.876) TCGA-G3-AAV4-01 2 70392230 70392230 G A C2orf42 Silent p.T449T 0.39 TCGA-G3-AAV4-01 2 80529936 80529936 C T LRRTM1 Missense_Mutation p.D337N 0.50 deleterious(0.01) probably_damaging(0.985) TCGA-G3-AAV4-01 2 97426789 97426789 G T CNNM4 Missense_Mutation p.R18L 0.51 tolerated_low_confidence(0.37) unknown(0) TCGA-G3-AAV4-01 2 98999859 98999859 C T CNGA3 Missense_Mutation p.P135L 0.41 tolerated(0.08) benign(0.049) TCGA-G3-AAV4-01 3 108140007 108140007 C T MYH15 Missense_Mutation p.A1273T 0.46 tolerated(0.99) benign(0.012) TCGA-G3-AAV4-01 3 132378678 132378678 T A UBA5 5'UTR 0.36 TCGA-G3-AAV4-01 3 134080568 134080568 C A AMOTL2 Missense_Mutation p.R454L 0.49 deleterious(0.01) possibly_damaging(0.577) TCGA-G3-AAV4-01 3 15262371 15262371 G C CAPN7 Missense_Mutation p.R174T 0.22 tolerated(0.59) benign(0.002) TCGA-G3-AAV4-01 3 192125948 192125948 T C FGF12 Missense_Mutation p.D22G 0.47 tolerated(0.09) benign(0.003) TCGA-G3-AAV4-01 3 194369508 194369508 A C LSG1 Missense_Mutation p.V482G 0.39 deleterious(0) possibly_damaging(0.865) TCGA-G3-AAV4-01 3 195925238 195925238 G - ZDHHC19 Frame_Shift_Del p.S287Lfs*66 0.35 TCGA-G3-AAV4-01 3 196867115 196867115 G T DLG1 Missense_Mutation p.F236L 0.44 deleterious(0.03) benign(0.38) TCGA-G3-AAV4-01 3 41266101 41266101 C G CTNNB1 Missense_Mutation p.S33C 0.48 deleterious(0) probably_damaging(0.987) TCGA-G3-AAV4-01 3 49146197 49146197 G - USP19 3'UTR 0.58 TCGA-G3-AAV4-01 3 78701014 78701014 C T ROBO1 Missense_Mutation p.V894M 0.38 deleterious(0) probably_damaging(0.986) TCGA-G3-AAV4-01 4 1017449 1017449 G T FGFRL1 Nonsense_Mutation p.E125* 0.60 TCGA-G3-AAV4-01 4 155460255 155460255 A G PLRG1 Splice_Site p.X384_splice 0.58 TCGA-G3-AAV4-01 4 81123578 81123578 C T PRDM8 Missense_Mutation p.A321V 0.58 tolerated(0.29) benign(0.008) TCGA-G3-AAV4-01 4 88411474 88411474 C A SPARCL1 Silent p.G494G 0.50 TCGA-G3-AAV4-01 5 127595357 127595357 G A FBN2 Silent p.S2843S 0.48 TCGA-G3-AAV4-01 5 140736155 140736155 A C PCDHGA4 Missense_Mutation p.E463A 0.46 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-G3-AAV4-01 5 140908429 140908429 A C DIAPH1 Missense_Mutation p.I953S 0.44 probably_damaging(0.998) TCGA-G3-AAV4-01 5 151138108 151138108 G A ATOX1 Missense_Mutation p.P2L 0.13 tolerated(0.24) benign(0.001) TCGA-G3-AAV4-01 5 169111291 169111291 G T DOCK2 Missense_Mutation p.R233I 0.41 deleterious(0.01) possibly_damaging(0.862) TCGA-G3-AAV4-01 5 169494540 169494540 C T DOCK2 Silent p.A1498A 0.41 TCGA-G3-AAV4-01 6 26508271 26508294 CTTTCTCTTTTGTTGCAGAATGGA GGG BTN1A1 Splice_Site p.X294_splice 0.40 TCGA-G3-AAV4-01 6 26508294 26508294 A G BTN1A1 Missense_Mutation p.K296E 0.42 tolerated(0.08) possibly_damaging(0.543) TCGA-G3-AAV4-01 6 30668320 30668320 G A MDC1 Silent p.F2064F 0.27 TCGA-G3-AAV4-01 6 38941510 38941510 C T DNAH8 Missense_Mutation p.T3983I 0.27 benign(0.03) TCGA-G3-AAV4-01 6 39902191 39902191 G A MOCS1 5'UTR 0.38 TCGA-G3-AAV4-01 6 42123246 42123246 G A GUCA1A 5'UTR 0.28 TCGA-G3-AAV4-01 6 56504967 56504967 G T DST Missense_Mutation p.L285I 0.37 probably_damaging(0.999) TCGA-G3-AAV4-01 6 97610000 97610000 C A MMS22L Missense_Mutation p.R1088L 0.83 deleterious(0.01) probably_damaging(0.994) TCGA-G3-AAV4-01 7 100682982 100682982 C A MUC17 Missense_Mutation p.P2762Q 0.19 unknown(0) TCGA-G3-AAV4-01 7 126746765 126746765 A G GRM8 Missense_Mutation p.I171T 0.50 deleterious(0) probably_damaging(0.994) TCGA-G3-AAV4-01 7 128485212 128485212 C T FLNC Silent p.G1231G 0.42 TCGA-G3-AAV4-01 7 26240334 26240334 C T HNRNPA2B1 5'UTR 0.54 TCGA-G3-AAV4-01 7 38725598 38725598 C A FAM183B Missense_Mutation p.G3V 0.46 deleterious(0) possibly_damaging(0.906) TCGA-G3-AAV4-01 7 48315020 48315020 A G ABCA13 Silent p.K1919K 0.50 TCGA-G3-AAV4-01 7 50121482 50121482 G A ZPBP Silent p.V74V 0.45 TCGA-G3-AAV4-01 7 73119372 73119372 G A STX1A Intron 0.47 TCGA-G3-AAV4-01 7 73152683 73152692 ATCTTGGCGA - ABHD11 Frame_Shift_Del p.I85Tfs*11 0.36 TCGA-G3-AAV4-01 7 80374265 80374265 G A SEMA3C Missense_Mutation p.A734V 0.43 tolerated(0.29) benign(0.004) TCGA-G3-AAV4-01 7 99697718 99697718 T C MCM7 Splice_Site p.X11_splice 0.42 TCGA-G3-AAV4-01 8 26220351 26220351 T C PPP2R2A Silent p.D273D 0.32 TCGA-G3-AAV4-01 8 8747952 8747952 G T MFHAS1 Missense_Mutation p.Q873K 0.06 tolerated(0.49) benign(0.037) TCGA-G3-AAV4-01 9 130688228 130688228 G A PIP5KL1 Silent p.R227R 0.50 TCGA-G3-AAV4-01 9 132614914 132614914 A G USP20 Missense_Mutation p.K27R 0.44 tolerated(0.37) benign(0.04) TCGA-G3-AAV4-01 9 134323169 134323169 C G PRRC2B Silent p.A366A 0.43 TCGA-G3-AAV4-01 9 139564771 139564771 C A EGFL7 Missense_Mutation p.P187H 0.43 deleterious(0.02) probably_damaging(0.935) TCGA-G3-AAV4-01 9 139564772 139564772 C A EGFL7 Silent p.P187P 0.43 TCGA-G3-AAV4-01 9 32541266 32541266 T A TOPORS 3'UTR 0.55 TCGA-G3-AAV4-01 9 34380993 34380993 G T C9orf24 Silent p.G203G 0.59 TCGA-G3-AAV4-01 9 37525102 37525102 T A FBXO10 Missense_Mutation p.T592S 0.46 deleterious(0.01) benign(0.173) TCGA-G3-AAV4-01 9 71006638 71006638 G T PGM5 Missense_Mutation p.G296W 0.44 deleterious(0) probably_damaging(1) TCGA-G3-AAV4-01 9 78722181 78722181 G A PCSK5 Silent p.L374L 0.37 TCGA-G3-AAV4-01 9 91618823 91618823 T C S1PR3 3'UTR 0.05 TCGA-G3-AAV4-01 9 990709 990709 A G DMRT3 Missense_Mutation p.T375A 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.899) TCGA-G3-AAV4-01 X 100265367 100265367 C A TRMT2B 3'UTR 0.33 TCGA-G3-AAV4-01 X 132548871 132548871 G A GPC4 Silent p.G41G 0.04 TCGA-G3-AAV4-01 X 152966418 152966418 C T BCAP31 Missense_Mutation p.G306S 0.35 tolerated(0.22) benign(0.344) TCGA-G3-AAV4-01 X 15306022 15306022 C T ASB11 Silent p.Q276Q 0.24 TCGA-G3-AAV4-01 X 27839801 27839801 C T MAGEB10 Silent p.Y126Y 0.55 TCGA-G3-AAV4-01 X 55033096 55033096 C T APEX2 Missense_Mutation p.S262L 0.27 deleterious(0.02) possibly_damaging(0.77) TCGA-G3-AAV4-01 X 70595090 70595090 C T TAF1 Silent p.P162P 0.30 TCGA-G3-AAV5-01 10 104172332 104172332 G A PSD Silent p.S518S 0.07 TCGA-G3-AAV5-01 10 104389858 104389858 G T SUFU Missense_Mutation p.K467N 0.25 tolerated(0.2) benign(0.071) TCGA-G3-AAV5-01 10 61830714 61830714 G T ANK3 Missense_Mutation p.P3309T 0.50 probably_damaging(0.992) TCGA-G3-AAV5-01 10 79397504 79397504 C T KCNMA1 5'Flank 0.50 TCGA-G3-AAV5-01 10 93716306 93716306 G A BTAF1 Silent p.E241E 0.29 TCGA-G3-AAV5-01 11 55681633 55681633 A G OR5W2 Silent p.Y142Y 0.33 TCGA-G3-AAV5-01 11 58892023 58892023 T C FAM111B Silent p.P151P 0.39 TCGA-G3-AAV5-01 11 61564454 61564454 G A FEN1 3'UTR 0.42 TCGA-G3-AAV5-01 11 62601897 62601897 A G WDR74 Splice_Site p.X240_splice 0.38 TCGA-G3-AAV5-01 11 63533598 63533598 G A C11orf95 RNA 0.56 TCGA-G3-AAV5-01 11 65767088 65767088 C T EIF1AD Silent p.S85S 0.44 TCGA-G3-AAV5-01 11 7960500 7960500 C A OR10A3 Missense_Mutation p.A190S 0.37 tolerated(0.08) benign(0.172) TCGA-G3-AAV5-01 12 110238504 110238504 C A TRPV4 Missense_Mutation p.V258L 0.26 tolerated(0.06) benign(0.074) TCGA-G3-AAV5-01 12 111080068 111080068 A T TCTN1 Missense_Mutation p.Q402L 0.41 tolerated(0.06) benign(0.105) TCGA-G3-AAV5-01 12 112617070 112617070 G A HECTD4 Nonsense_Mutation p.Q3561* 0.37 TCGA-G3-AAV5-01 12 115118848 115118848 A T TBX3 Missense_Mutation p.F165I 0.39 deleterious(0) probably_damaging(0.999) TCGA-G3-AAV5-01 12 122862289 122862289 A G CLIP1 Missense_Mutation p.S102P 0.34 deleterious(0) probably_damaging(0.99) TCGA-G3-AAV5-01 12 57037707 57037707 A G ATP5B Missense_Mutation p.M174T 0.34 tolerated_low_confidence(0.41) benign(0) TCGA-G3-AAV5-01 12 57868703 57868703 C A ARHGAP9 Missense_Mutation p.V536L 0.34 deleterious(0) possibly_damaging(0.508) TCGA-G3-AAV5-01 12 65085254 65085254 C T RASSF3 Silent p.Y154Y 0.42 TCGA-G3-AAV5-01 13 111767970 111767970 G A ARHGEF7 Missense_Mutation p.A33T 0.32 tolerated_low_confidence(0.94) benign(0.001) TCGA-G3-AAV5-01 13 115067260 115067260 A G UPF3A Silent p.Q354Q 0.42 TCGA-G3-AAV5-01 13 20237193 20237193 C T MPHOSPH8 Missense_Mutation p.T649I 0.33 tolerated(0.13) probably_damaging(1) TCGA-G3-AAV5-01 14 21460771 21460771 C T METTL17 Missense_Mutation p.A173V 0.39 tolerated(0.61) possibly_damaging(0.73) TCGA-G3-AAV5-01 14 27064670 27064670 G A NOVA1 Nonsense_Mutation p.Q76* 0.28 TCGA-G3-AAV5-01 14 80130128 80130128 G T NRXN3 Missense_Mutation p.G778V 0.33 deleterious(0) benign(0.049) TCGA-G3-AAV5-01 15 100821591 100821591 G A ADAMTS17 Missense_Mutation p.T211M 0.39 tolerated(0.14) benign(0.006) TCGA-G3-AAV5-01 15 41988500 41988500 A G MGA Missense_Mutation p.N431S 0.40 tolerated(0.77) benign(0.002) TCGA-G3-AAV5-01 15 43020923 43020923 G C CDAN1 Missense_Mutation p.P911A 0.34 tolerated(0.51) benign(0.007) TCGA-G3-AAV5-01 15 65489872 65489872 C A CILP Nonsense_Mutation p.E918* 0.35 TCGA-G3-AAV5-01 15 65685815 65685815 G T IGDCC4 Nonsense_Mutation p.S590* 0.33 TCGA-G3-AAV5-01 15 76075352 76075352 C T RN7SL319P 5'Flank 0.47 TCGA-G3-AAV5-01 16 1391408 1391408 G A BAIAP3 Missense_Mutation p.G252R 0.41 deleterious(0.02) possibly_damaging(0.892) TCGA-G3-AAV5-01 16 18861619 18861619 G A SMG1 Silent p.F1741F 0.51 TCGA-G3-AAV5-01 16 2224041 2224041 A G TRAF7 Missense_Mutation p.T419A 0.06 deleterious(0.01) probably_damaging(0.91) TCGA-G3-AAV5-01 16 335324 335324 A T PDIA2 Missense_Mutation p.I270F 0.43 deleterious(0) probably_damaging(0.998) TCGA-G3-AAV5-01 16 570189 570197 GGGGCCGCA - RAB11FIP3 In_Frame_Del p.G644_S646del 0.34 TCGA-G3-AAV5-01 16 67701908 67701919 AAAAAAGCCAAG - C16orf86 In_Frame_Del p.K155_K158del 0.25 TCGA-G3-AAV5-01 16 67985043 67985043 C A SLC12A4 Missense_Mutation p.G435C 0.45 deleterious(0) probably_damaging(0.964) TCGA-G3-AAV5-01 16 90124562 90124562 T A PRDM7 3'UTR 0.44 TCGA-G3-AAV5-01 17 16347348 16347348 G T FAM211A Missense_Mutation p.L197I 0.10 deleterious(0) probably_damaging(0.99) TCGA-G3-AAV5-01 17 20921295 20921295 C T USP22 Missense_Mutation p.S217N 0.40 tolerated(0.34) benign(0.008) TCGA-G3-AAV5-01 17 30469474 30469474 C A AC090616.2 Silent p.R88R 0.56 TCGA-G3-AAV5-01 17 37074888 37074888 G A LASP1 Missense_Mutation p.A215T 0.26 deleterious(0) probably_damaging(1) TCGA-G3-AAV5-01 17 3769111 3769111 C T CAMKK1 3'UTR 0.77 TCGA-G3-AAV5-01 17 39635730 39635730 G T KRT35 Missense_Mutation p.Q194K 0.56 deleterious(0.03) benign(0.393) TCGA-G3-AAV5-01 17 42386028 42386028 G A RUNDC3A 5'UTR 0.36 TCGA-G3-AAV5-01 17 45608617 45608621 CCCCA - NPEPPS 5'UTR 0.26 TCGA-G3-AAV5-01 17 60028267 60028267 T A MED13 Silent p.S2070S 0.63 TCGA-G3-AAV5-01 17 79848595 79848595 C T ALYREF Silent p.L120L 0.50 TCGA-G3-AAV5-01 19 10610366 10610366 A T KEAP1 Missense_Mutation p.L115Q 0.34 deleterious(0) probably_damaging(0.992) TCGA-G3-AAV5-01 19 14044164 14044164 C T PODNL1 Missense_Mutation p.R298H 0.39 tolerated(0.21) benign(0.014) TCGA-G3-AAV5-01 19 14517933 14517933 C G CD97 Silent p.G756G 0.30 TCGA-G3-AAV5-01 19 19791186 19791186 G T ZNF101 3'UTR 0.45 TCGA-G3-AAV5-01 19 46196071 46196071 C T QPCTL Missense_Mutation p.P37L 0.47 tolerated(0.61) benign(0.035) TCGA-G3-AAV5-01 19 49459465 49459465 G T BAX Missense_Mutation p.A82S 0.28 tolerated(0.85) benign(0.058) TCGA-G3-AAV5-01 19 50250010 50250010 G A TSKS Nonsense_Mutation p.R237* 0.36 TCGA-G3-AAV5-01 19 58361385 58361385 C T ZNF587 5'UTR 0.36 TCGA-G3-AAV5-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.27 tolerated(0.06) benign(0.006) TCGA-G3-AAV5-01 1 1558785 1558785 C G MIB2 Missense_Mutation p.P100A 0.37 tolerated_low_confidence(0.45) benign(0.004) TCGA-G3-AAV5-01 1 156914158 156914158 T A ARHGEF11 Missense_Mutation p.K1020M 0.22 deleterious(0) probably_damaging(0.953) TCGA-G3-AAV5-01 1 158054355 158054355 G C KIRREL Missense_Mutation p.A166P 0.21 deleterious(0.03) possibly_damaging(0.495) TCGA-G3-AAV5-01 1 165796934 165796946 TCGCAGGCGAGCG - UCK2 5'UTR 0.29 TCGA-G3-AAV5-01 1 178427542 178427542 G A RASAL2 Missense_Mutation p.G1039R 0.19 tolerated(0.22) probably_damaging(0.927) TCGA-G3-AAV5-01 1 179544879 179544879 C T NPHS2 Missense_Mutation p.A41T 0.35 tolerated(0.37) benign(0.003) TCGA-G3-AAV5-01 1 206240158 206240158 G A C1orf186 Silent p.S98S 0.20 TCGA-G3-AAV5-01 1 210273550 210273550 T C SYT14 Missense_Mutation p.V348A 0.20 deleterious(0.02) probably_damaging(0.951) TCGA-G3-AAV5-01 1 226895478 226895478 T C ITPKB Intron 0.04 TCGA-G3-AAV5-01 1 228295710 228295710 G C MRPL55 Silent p.G34G 0.45 TCGA-G3-AAV5-01 1 228504446 228504446 C T OBSCN Missense_Mutation p.A5398V 0.04 benign(0.01) TCGA-G3-AAV5-01 1 47904970 47904970 G T FOXD2 Missense_Mutation p.R388L 0.45 tolerated_low_confidence(0.38) unknown(0) TCGA-G3-AAV5-01 1 53443889 53443889 T G SCP2 Missense_Mutation p.C225W 0.46 deleterious(0.01) possibly_damaging(0.711) TCGA-G3-AAV5-01 1 62175038 62175038 C G TM2D1 Missense_Mutation p.E166Q 0.31 tolerated(0.06) possibly_damaging(0.699) TCGA-G3-AAV5-01 20 3005219 3005219 C G PTPRA Nonsense_Mutation p.Y522* 0.33 TCGA-G3-AAV5-01 20 49510049 49510049 G C ADNP Missense_Mutation p.S401C 0.41 deleterious(0.02) probably_damaging(0.91) TCGA-G3-AAV5-01 20 55111382 55111382 G A FAM209B Missense_Mutation p.G135D 0.05 tolerated(0.27) benign(0.208) TCGA-G3-AAV5-01 2 218999521 218999521 A - CXCR2 5'UTR p.M1? 0.23 TCGA-G3-AAV5-01 2 219849832 219849832 G T FEV 5'UTR 0.46 TCGA-G3-AAV5-01 2 227660609 227660609 C T IRS1 Missense_Mutation p.G949D 0.40 tolerated(0.25) probably_damaging(0.921) TCGA-G3-AAV5-01 2 27434923 27434923 C T SLC5A6 5'UTR 0.47 TCGA-G3-AAV5-01 2 71743345 71743345 G C DYSF Missense_Mutation p.E308D 0.37 tolerated(0.33) benign(0.028) TCGA-G3-AAV5-01 3 119211398 119211398 A G POGLUT1 3'UTR 0.37 TCGA-G3-AAV5-01 3 187451412 187451412 G T BCL6 Missense_Mutation p.R24S 0.36 deleterious(0.01) probably_damaging(0.967) TCGA-G3-AAV5-01 3 195477874 195477874 G A MUC4 Silent p.L5253L 0.44 TCGA-G3-AAV5-01 3 41266097 41266097 G A CTNNB1 Missense_Mutation p.D32N 0.43 deleterious(0.05) possibly_damaging(0.686) TCGA-G3-AAV5-01 3 50091780 50091780 A G RBM6 Missense_Mutation p.I549V 0.42 tolerated(0.22) benign(0) TCGA-G3-AAV5-01 3 52818348 52818348 G T ITIH1 Missense_Mutation p.R421L 0.34 deleterious(0.03) possibly_damaging(0.863) TCGA-G3-AAV5-01 3 56763387 56763387 C A ARHGEF3 Missense_Mutation p.D530Y 0.45 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-G3-AAV5-01 4 16204107 16204107 T C TAPT1 Missense_Mutation p.T143A 0.38 tolerated(0.06) benign(0.014) TCGA-G3-AAV5-01 4 186284811 186284811 C A SNX25 3'UTR 0.44 TCGA-G3-AAV5-01 4 22390453 22390453 C T GPR125 Silent p.E947E 0.35 TCGA-G3-AAV5-01 4 74274517 74274518 - A ALB Frame_Shift_Ins p.Y162Ifs*4 0.25 TCGA-G3-AAV5-01 4 74283386 74283387 TG - ALB Splice_Site p.X476_splice 0.30 TCGA-G3-AAV5-01 4 74361077 74361078 - GA AFM Frame_Shift_Ins p.V374Efs*9 0.22 TCGA-G3-AAV5-01 4 77969331 77969331 A G CCNI 3'UTR 0.43 TCGA-G3-AAV5-01 4 80952804 80952804 G A ANTXR2 Missense_Mutation p.P280L 0.36 deleterious(0) probably_damaging(0.928) TCGA-G3-AAV5-01 6 121769462 121769462 G T GJA1 3'UTR 0.41 TCGA-G3-AAV5-01 6 150114716 150114716 A G PCMT1 Missense_Mutation p.D168G 0.32 deleterious(0) probably_damaging(0.995) TCGA-G3-AAV5-01 6 34846457 34846457 T C TAF11 Silent p.L182L 0.35 TCGA-G3-AAV5-01 6 36275578 36275578 G A PNPLA1 3'UTR 0.51 TCGA-G3-AAV5-01 6 75795028 75795028 C T COL12A1 3'UTR 0.36 TCGA-G3-AAV5-01 7 100676597 100676597 A G MUC17 Missense_Mutation p.M634V 0.48 benign(0.019) TCGA-G3-AAV5-01 7 149543298 149543298 G A ZNF862 Nonsense_Mutation p.W65* 0.56 TCGA-G3-AAV5-01 7 155251300 155251300 G A EN2 Silent p.R76R 0.52 TCGA-G3-AAV5-01 7 23338987 23338987 C T MALSU1 Missense_Mutation p.R6C 0.26 tolerated_low_confidence(0.49) benign(0) TCGA-G3-AAV5-01 7 4308133 4308133 G T SDK1 3'UTR 0.58 TCGA-G3-AAV5-01 7 48315442 48315442 C A ABCA13 Missense_Mutation p.P2060H 0.58 benign(0.067) TCGA-G3-AAV5-01 7 48431534 48431534 C T ABCA13 Missense_Mutation p.L3891F 0.20 probably_damaging(1) TCGA-G3-AAV5-01 7 77762222 77762222 G T MAGI2 Missense_Mutation p.Q1063K 0.57 tolerated(0.94) benign(0.158) TCGA-G3-AAV5-01 7 99768966 99768966 C T GPC2 Silent p.R468R 0.29 TCGA-G3-AAV5-01 8 126443458 126443458 T C TRIB1 Missense_Mutation p.V105A 0.19 tolerated(0.6) benign(0.043) TCGA-G3-AAV5-01 8 133899121 133899121 C T TG Nonsense_Mutation p.Q502* 0.22 TCGA-G3-AAV5-01 8 144940731 144940731 C A EPPK1 Missense_Mutation p.V2231L 0.21 benign(0.015) TCGA-G3-AAV5-01 8 144940732 144940732 C G EPPK1 Silent p.L2230L 0.21 TCGA-G3-AAV5-01 8 145057702 145057702 G A PARP10 Silent p.L685L 0.13 TCGA-G3-AAV5-01 8 95158192 95158192 T G CDH17 Missense_Mutation p.S711R 0.30 tolerated(0.14) benign(0.09) TCGA-G3-AAV5-01 9 117020825 117020825 C T COL27A1 Missense_Mutation p.P1049L 0.42 unknown(0) TCGA-G3-AAV5-01 9 32631164 32631164 C A TAF1L Missense_Mutation p.V1472L 0.38 tolerated(0.14) probably_damaging(0.975) TCGA-G3-AAV5-01 9 32631294 32631294 G T TAF1L Silent p.V1428V 0.30 TCGA-G3-AAV5-01 9 4665139 4665139 T G PPAPDC2 3'UTR 0.29 TCGA-G3-AAV5-01 9 4665152 4665152 T G PPAPDC2 3'UTR 0.31 TCGA-G3-AAV6-01 10 102256096 102256096 C A SEC31B Missense_Mutation p.R743S 0.11 deleterious(0.04) benign(0.015) TCGA-G3-AAV6-01 10 43312903 43312903 T G BMS1 Nonsense_Mutation p.Y847* 0.30 TCGA-G3-AAV6-01 10 50681069 50681069 T C ERCC6 Silent p.T905T 0.33 TCGA-G3-AAV6-01 10 64573833 64573833 G A EGR2 Silent p.L189L 0.09 TCGA-G3-AAV6-01 10 75910967 75910967 A G ADK 5'Flank 0.23 TCGA-G3-AAV6-01 10 88422074 88422074 G A OPN4 Missense_Mutation p.R391H 0.17 tolerated(0.67) benign(0.005) TCGA-G3-AAV6-01 10 99656702 99656702 G T CRTAC1 Missense_Mutation p.P394T 0.07 tolerated(0.47) benign(0.076) TCGA-G3-AAV6-01 11 133402163 133402163 G A OPCML Silent p.I19I 0.07 TCGA-G3-AAV6-01 11 32954330 32954330 G T QSER1 Missense_Mutation p.G380V 0.06 deleterious(0.02) benign(0.342) TCGA-G3-AAV6-01 11 33076187 33076187 G T TCP11L1 Missense_Mutation p.R71I 0.15 deleterious(0) benign(0.005) TCGA-G3-AAV6-01 12 42853795 42853795 T A PRICKLE1 Missense_Mutation p.D771V 0.38 deleterious(0) possibly_damaging(0.886) TCGA-G3-AAV6-01 12 52845384 52845384 C T KRT6B Missense_Mutation p.R160Q 0.14 deleterious(0.01) possibly_damaging(0.481) TCGA-G3-AAV6-01 12 5860094 5860094 C A ANO2 Silent p.L362L 0.04 TCGA-G3-AAV6-01 13 103520547 103520547 C A BIVM-ERCC5 Missense_Mutation p.T1299N 0.16 deleterious(0) probably_damaging(0.978) TCGA-G3-AAV6-01 14 24769239 24769239 G A NOP9 Missense_Mutation p.G27R 0.54 tolerated(0.16) benign(0.004) TCGA-G3-AAV6-01 14 58734222 58734222 A G PSMA3 Missense_Mutation p.K192E 0.13 tolerated(0.08) benign(0.014) TCGA-G3-AAV6-01 14 60193689 60193689 C A RTN1 Silent p.G571G 0.12 TCGA-G3-AAV6-01 14 77493785 77493785 C T IRF2BPL Silent p.Q117Q 0.09 TCGA-G3-AAV6-01 15 63547751 63547751 A G RAB8B Missense_Mutation p.N98D 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-G3-AAV6-01 15 77763375 77763375 C T HMG20A Missense_Mutation p.H192Y 0.33 deleterious(0.03) benign(0.002) TCGA-G3-AAV6-01 15 79588327 79588327 C A ANKRD34C 3'UTR 0.69 TCGA-G3-AAV6-01 16 2342161 2342161 G A ABCA3 Silent p.T831T 0.14 TCGA-G3-AAV6-01 16 24942269 24942269 G C ARHGAP17 Missense_Mutation p.P784R 0.05 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-G3-AAV6-01 16 2569246 2569246 A C RP11-20I23.1 Missense_Mutation p.Q331H 0.56 deleterious_low_confidence(0) benign(0) TCGA-G3-AAV6-01 16 88968033 88968033 C A CBFA2T3 Silent p.A61A 0.45 TCGA-G3-AAV6-01 17 26958607 26958607 G T KIAA0100 Missense_Mutation p.P1397T 0.03 tolerated(0.69) benign(0.002) TCGA-G3-AAV6-01 17 34072962 34072962 G A GAS2L2 Silent p.S518S 0.36 TCGA-G3-AAV6-01 17 38643429 38643429 G A TNS4 Missense_Mutation p.P383S 0.18 tolerated(0.17) benign(0.064) TCGA-G3-AAV6-01 17 67212097 67212120 CATAGGTTTCCTTATTAAAACACT - ABCA10 In_Frame_Del p.S232_M239del 0.10 TCGA-G3-AAV6-01 17 76671943 76671943 A G CYTH1 3'UTR 0.09 TCGA-G3-AAV6-01 17 7682620 7682620 G A DNAH2 Silent p.V1867V 0.16 TCGA-G3-AAV6-01 17 9850209 9850209 A G GAS7 Splice_Site p.X205_splice 0.09 TCGA-G3-AAV6-01 19 1422373 1422373 C G DAZAP1 Missense_Mutation p.D147E 0.38 deleterious(0) unknown(0) TCGA-G3-AAV6-01 19 15224540 15224540 C T SYDE1 Silent p.C658C 0.44 TCGA-G3-AAV6-01 19 18684552 18684552 C T UBA52 Nonsense_Mutation p.Q62* 0.48 TCGA-G3-AAV6-01 19 22170031 22170031 C A ZNF208 Silent p.V71V 0.29 TCGA-G3-AAV6-01 19 23543281 23543281 C T ZNF91 Missense_Mutation p.A834T 0.43 tolerated(0.24) benign(0.239) TCGA-G3-AAV6-01 19 39398077 39398077 G A NFKBIB Silent p.V249V 0.13 TCGA-G3-AAV6-01 19 41515201 41515201 C T CYP2B6 Silent p.I241I 0.21 TCGA-G3-AAV6-01 19 47260089 47260089 C T FKRP Missense_Mutation p.A461V 0.48 tolerated(0.09) possibly_damaging(0.493) TCGA-G3-AAV6-01 19 51293729 51293729 C G ACPT Missense_Mutation p.L20V 0.06 tolerated(0.27) benign(0.001) TCGA-G3-AAV6-01 19 55591839 55591839 G C EPS8L1 Intron 0.11 TCGA-G3-AAV6-01 19 56320851 56320851 A T NLRP11 Silent p.A375A 0.10 TCGA-G3-AAV6-01 19 57134511 57134511 T A ZNF71 3'UTR 0.22 TCGA-G3-AAV6-01 19 621680 621680 G A POLRMT Missense_Mutation p.T673M 0.42 tolerated(0.15) possibly_damaging(0.715) TCGA-G3-AAV6-01 19 758337 758337 C T MISP Missense_Mutation p.T464M 0.13 deleterious(0.02) possibly_damaging(0.754) TCGA-G3-AAV6-01 1 112524623 112524623 G C KCND3 Silent p.L242L 0.07 TCGA-G3-AAV6-01 1 115280104 115280104 G C CSDE1 Nonsense_Mutation p.Y176* 0.14 TCGA-G3-AAV6-01 1 204093920 204093920 C T SOX13 Silent p.R509R 0.20 TCGA-G3-AAV6-01 1 214557166 214557166 C T PTPN14 Missense_Mutation p.E678K 0.31 tolerated(0.58) benign(0.002) TCGA-G3-AAV6-01 1 244217791 244217791 G C ZBTB18 Missense_Mutation p.V239L 0.03 tolerated(0.65) benign(0.001) TCGA-G3-AAV6-01 1 79357333 79357333 G T ELTD1 Missense_Mutation p.T629N 0.10 deleterious(0.01) possibly_damaging(0.906) TCGA-G3-AAV6-01 1 9791241 9791241 G T CLSTN1 Intron 0.10 TCGA-G3-AAV6-01 20 21142862 21142862 G A RP4-777D9.2 Intron 0.38 TCGA-G3-AAV6-01 20 2411162 2411162 G C TGM6 Silent p.L583L 0.06 TCGA-G3-AAV6-01 20 39832198 39832198 C T ZHX3 Silent p.Q453Q 0.05 TCGA-G3-AAV6-01 22 17590239 17590239 C T IL17RA Silent p.G710G 0.38 TCGA-G3-AAV6-01 22 19442129 19442129 T G UFD1L Intron 0.45 TCGA-G3-AAV6-01 2 125671927 125671927 T C CNTNAP5 3'UTR 0.07 TCGA-G3-AAV6-01 2 130948160 130948160 G A MZT2B Silent p.G146G 0.14 TCGA-G3-AAV6-01 2 141625315 141625315 C A LRP1B Missense_Mutation p.V1475L 0.28 benign(0) TCGA-G3-AAV6-01 2 179433557 179433557 G T TTN Missense_Mutation p.L25768I 0.13 TCGA-G3-AAV6-01 2 202900925 202900925 C T FZD7 Missense_Mutation p.H519Y 0.59 tolerated(0.95) benign(0) TCGA-G3-AAV6-01 2 219888857 219888857 A C CCDC108 Silent p.T825T 0.13 TCGA-G3-AAV6-01 2 220079752 220079752 T C ABCB6 Missense_Mutation p.I403V 0.13 tolerated(1) benign(0.006) TCGA-G3-AAV6-01 2 241631580 241631580 C T AQP12A Silent p.H71H 0.10 TCGA-G3-AAV6-01 2 29551276 29551276 C A ALK Missense_Mutation p.G452W 0.28 deleterious(0.05) probably_damaging(1) TCGA-G3-AAV6-01 2 38301854 38301854 G C CYP1B1 Missense_Mutation p.S226R 0.08 tolerated(0.11) possibly_damaging(0.851) TCGA-G3-AAV6-01 2 55871841 55871846 GAACCT - PNPT1 In_Frame_Del p.Q611_V612del 0.20 TCGA-G3-AAV6-01 2 61719221 61719221 A C XPO1 Missense_Mutation p.D612E 0.30 tolerated(0.93) benign(0.004) TCGA-G3-AAV6-01 2 73438038 73438038 A C NOTO Missense_Mutation p.E246A 0.15 deleterious(0.01) benign(0.002) TCGA-G3-AAV6-01 2 74598683 74598683 G C DCTN1 Missense_Mutation p.P209R 0.25 tolerated(0.19) benign(0.126) TCGA-G3-AAV6-01 2 86707311 86707311 C T KDM3A Missense_Mutation p.P780S 0.50 tolerated(0.53) benign(0.001) TCGA-G3-AAV6-01 3 11406156 11406156 G T ATG7 Missense_Mutation p.S608I 0.05 tolerated(0.1) benign(0.41) TCGA-G3-AAV6-01 3 12944273 12944273 T G IQSEC1 Missense_Mutation p.E949D 0.07 deleterious(0.02) probably_damaging(0.997) TCGA-G3-AAV6-01 3 41266136 41266136 T C CTNNB1 Missense_Mutation p.S45P 0.39 deleterious(0) probably_damaging(0.939) TCGA-G3-AAV6-01 3 69101099 69101099 G A TMF1 Missense_Mutation p.P47S 0.06 tolerated_low_confidence(0.07) benign(0.034) TCGA-G3-AAV6-01 4 47527592 47527592 G A ATP10D Missense_Mutation p.E237K 0.50 tolerated(0.18) probably_damaging(0.925) TCGA-G3-AAV6-01 4 78087026 78087026 C T CCNG2 Silent p.C328C 0.45 TCGA-G3-AAV6-01 5 118485628 118485628 G A DMXL1 Missense_Mutation p.R1369H 0.20 deleterious(0) probably_damaging(0.982) TCGA-G3-AAV6-01 5 126993411 126993411 T C CTXN3 Silent p.D66D 0.24 TCGA-G3-AAV6-01 5 140591502 140591502 T C PCDHB12 3'UTR 0.24 TCGA-G3-AAV6-01 5 146750236 146750236 C G STK32A Missense_Mutation p.S227C 0.28 deleterious(0) probably_damaging(0.995) TCGA-G3-AAV6-01 5 64267604 64267604 C A CWC27 Missense_Mutation p.Q373K 0.20 tolerated(1) benign(0.006) TCGA-G3-AAV6-01 6 52271215 52271215 C A PAQR8 3'UTR 0.24 TCGA-G3-AAV6-01 6 75866111 75866111 G T COL12A1 Missense_Mutation p.Q1038K 0.21 benign(0.174) TCGA-G3-AAV6-01 6 90312775 90312775 A C ANKRD6 Missense_Mutation p.T83P 0.14 deleterious(0.01) benign(0.427) TCGA-G3-AAV6-01 7 11082380 11082380 C G PHF14 Missense_Mutation p.H751D 0.44 deleterious(0) possibly_damaging(0.492) TCGA-G3-AAV6-01 7 141896605 141896605 A T RP11-1220K2.2 Missense_Mutation p.I1541F 0.67 benign(0.095) TCGA-G3-AAV6-01 7 143175109 143175109 C T TAS2R41 Silent p.L48L 0.60 TCGA-G3-AAV6-01 7 146536879 146536879 C G CNTNAP2 Missense_Mutation p.I95M 0.17 deleterious(0) possibly_damaging(0.896) TCGA-G3-AAV6-01 7 150646082 150646082 C T KCNH2 Silent p.S818S 0.19 TCGA-G3-AAV6-01 7 2566926 2566926 G A LFNG 3'UTR 0.20 TCGA-G3-AAV6-01 7 38429486 38429486 A G AMPH Silent p.F633F 0.49 TCGA-G3-AAV6-01 7 38457535 38457535 C G AMPH Missense_Mutation p.A430P 0.21 tolerated(0.06) benign(0.005) TCGA-G3-AAV6-01 7 44027730 44027732 TGT - POLR2J4 RNA 0.40 TCGA-G3-AAV6-01 7 45123003 45123004 GA C NACAD Frame_Shift_Del p.L926Cfs*44 0.26 TCGA-G3-AAV6-01 7 64438319 64438319 G T ZNF117 3'UTR 0.10 TCGA-G3-AAV6-01 7 99699318 99699318 G C AP4M1 5'UTR 0.51 TCGA-G3-AAV6-01 9 111617803 111617803 G A ACTL7B Silent p.T136T 0.16 TCGA-G3-AAV6-01 9 119463136 119463136 G C TRIM32 3'UTR 0.42 TCGA-G3-AAV6-01 9 139836598 139836598 G C FBXW5 Silent p.A332A 0.32 TCGA-G3-AAV6-01 9 39178325 39178325 C T CNTNAP3 Missense_Mutation p.A191T 0.02 tolerated(0.09) benign(0.011) TCGA-G3-AAV6-01 9 94487147 94487147 C T ROR2 Silent p.V543V 0.31 TCGA-G3-AAV6-01 X 114427021 114427021 G A RBMXL3 Missense_Mutation p.G1006D 0.24 tolerated_low_confidence(0.06) benign(0.066) TCGA-G3-AAV6-01 X 119059265 119059267 TCT - NKAP In_Frame_Del p.E389del 0.26 TCGA-G3-AAV6-01 X 135428654 135428654 T C GPR112 Missense_Mutation p.M930T 0.52 tolerated(0.22) benign(0) TCGA-G3-AAV6-01 X 144909207 144909207 A G TMEM257 Silent p.R4R 0.19 TCGA-G3-AAV6-01 X 153039448 153039448 G T PLXNB3 Silent p.G1161G 0.36 TCGA-G3-AAV6-01 X 19983768 19983768 T A CXorf23 Missense_Mutation p.D223V 0.20 deleterious(0) possibly_damaging(0.894) TCGA-G3-AAV6-01 X 38150276 38150276 G T RPGR Missense_Mutation p.T503K 0.19 probably_damaging(0.996) TCGA-G3-AAV6-01 X 48932251 48932251 C T WDR45 3'Flank 0.20 TCGA-G3-AAV6-01 X 54978348 54978348 C T PFKFB1 Missense_Mutation p.R279H 0.49 benign(0.118) TCGA-G3-AAV6-01 X 70443636 70443637 - TCATCT GJB1 In_Frame_Ins p.I30_F31dup 0.20 TCGA-G3-AAV6-01 X 79283514 79283514 G T TBX22 Missense_Mutation p.E296D 0.15 tolerated(0.06) benign(0.194) TCGA-G3-AAV7-01 10 101950685 101950685 G T CHUK Missense_Mutation p.L717I 0.18 tolerated(0.53) benign(0.39) TCGA-G3-AAV7-01 10 105254180 105254180 C T NEURL1 Silent p.P12P 0.32 TCGA-G3-AAV7-01 10 16955931 16955931 G C CUBN Missense_Mutation p.P2471R 0.19 tolerated(0.13) benign(0) TCGA-G3-AAV7-01 10 17142085 17142085 T C CUBN Missense_Mutation p.N562D 0.33 deleterious(0.02) probably_damaging(0.928) TCGA-G3-AAV7-01 10 49381086 49381086 A T FRMPD2 Nonsense_Mutation p.C1042* 0.48 TCGA-G3-AAV7-01 10 61412663 61412663 A T SLC16A9 Missense_Mutation p.F466Y 0.32 deleterious(0) probably_damaging(0.974) TCGA-G3-AAV7-01 10 65281265 65281265 C T REEP3 5'UTR 0.07 TCGA-G3-AAV7-01 10 85997354 85997354 T C LRIT1 Missense_Mutation p.I71V 0.19 tolerated(0.11) benign(0.033) TCGA-G3-AAV7-01 10 87373360 87373360 T C GRID1 Missense_Mutation p.Q802R 0.32 tolerated(0.3) benign(0.345) TCGA-G3-AAV7-01 10 88994174 88994174 T G NUTM2A Silent p.P782P 0.26 TCGA-G3-AAV7-01 11 102660868 102660868 T C MMP1 3'UTR 0.38 TCGA-G3-AAV7-01 11 130079716 130079716 T - ST14 Frame_Shift_Del p.*856R 0.16 TCGA-G3-AAV7-01 11 34493186 34493186 A - CAT 3'UTR 0.31 TCGA-G3-AAV7-01 11 65404386 65404386 G T PCNXL3 Missense_Mutation p.W2014C 0.39 deleterious_low_confidence(0.01) benign(0.18) TCGA-G3-AAV7-01 11 66460194 66460194 C T SPTBN2 Missense_Mutation p.R1668H 0.09 deleterious(0.04) probably_damaging(0.998) TCGA-G3-AAV7-01 12 107103177 107103177 C T RFX4 Silent p.L310L 0.29 TCGA-G3-AAV7-01 12 19501413 19501413 A G PLEKHA5 Silent p.K993K 0.43 TCGA-G3-AAV7-01 12 54118961 54118961 C A CALCOCO1 Silent p.R22R 0.18 TCGA-G3-AAV7-01 12 58131025 58131025 G T AGAP2 Silent p.G335G 0.32 TCGA-G3-AAV7-01 12 58131661 58131661 G T AGAP2 Silent p.L123L 0.16 TCGA-G3-AAV7-01 12 99145188 99145188 T C ANKS1B Missense_Mutation p.E1206G 0.22 tolerated(0.09) benign(0.046) TCGA-G3-AAV7-01 13 48923160 48923160 G A RB1 Splice_Site p.X203_splice 0.46 TCGA-G3-AAV7-01 13 97639005 97639005 G A OXGR1 Missense_Mutation p.P337S 0.56 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-G3-AAV7-01 14 23450783 23450783 A C AJUBA Nonsense_Mutation p.Y231* 0.44 TCGA-G3-AAV7-01 14 24774309 24774309 G T NOP9 3'UTR 0.38 TCGA-G3-AAV7-01 14 77685213 77685213 G T TMEM63C Silent p.V19V 0.51 TCGA-G3-AAV7-01 15 41475927 41475927 A C EXD1 3'UTR 0.50 TCGA-G3-AAV7-01 15 43477752 43477752 A C CCNDBP1 Missense_Mutation p.E19A 0.51 tolerated(0.08) unknown(0) TCGA-G3-AAV7-01 15 79296322 79296322 G A RASGRF1 Silent p.A773A 0.58 TCGA-G3-AAV7-01 16 2124225 2124225 C T TSC2 Nonsense_Mutation p.Q794* 0.45 TCGA-G3-AAV7-01 16 364646 364647 - A AXIN1 Frame_Shift_Ins p.V306Cfs*45 0.30 TCGA-G3-AAV7-01 16 50120257 50120257 A G HEATR3 Missense_Mutation p.Q502R 0.43 tolerated(0.1) benign(0.003) TCGA-G3-AAV7-01 16 74660446 74660446 T C RFWD3 Missense_Mutation p.N659S 0.58 tolerated(0.46) benign(0.013) TCGA-G3-AAV7-01 17 19316310 19316310 C A RNF112 Silent p.G147G 0.35 TCGA-G3-AAV7-01 17 44630766 44630766 A T LRRC37A2 Missense_Mutation p.I1604L 0.28 deleterious(0.04) possibly_damaging(0.558) TCGA-G3-AAV7-01 17 4837682 4837682 C G GP1BA Missense_Mutation p.L595V 0.49 deleterious(0) unknown(0) TCGA-G3-AAV7-01 17 71503638 71503638 G T SDK2 Missense_Mutation p.P55T 0.25 deleterious(0) probably_damaging(1) TCGA-G3-AAV7-01 17 73177179 73177179 T C SUMO2 Silent p.K42K 0.22 TCGA-G3-AAV7-01 17 74878442 74878442 C T MGAT5B Intron 0.24 TCGA-G3-AAV7-01 17 7577153 7577153 C - TP53 Frame_Shift_Del p.G262Vfs*83 0.25 TCGA-G3-AAV7-01 17 76129505 76129505 C A TMC8 Missense_Mutation p.L184I 0.31 deleterious(0) probably_damaging(0.997) TCGA-G3-AAV7-01 18 21197723 21197723 T A ANKRD29 Missense_Mutation p.K232N 0.23 deleterious(0.04) probably_damaging(0.977) TCGA-G3-AAV7-01 18 5434095 5434095 C G EPB41L3 Missense_Mutation p.D211H 0.04 deleterious(0) possibly_damaging(0.89) TCGA-G3-AAV7-01 18 65179555 65179555 A G DSEL Missense_Mutation p.I774T 0.34 tolerated(0.67) benign(0.001) TCGA-G3-AAV7-01 19 10578444 10578444 T G PDE4A 3'UTR 0.50 TCGA-G3-AAV7-01 19 19336002 19336002 T C NCAN Missense_Mutation p.V332A 0.14 deleterious(0.02) probably_damaging(0.994) TCGA-G3-AAV7-01 19 36530605 36530605 G A THAP8 Nonsense_Mutation p.R98* 0.32 TCGA-G3-AAV7-01 19 46332347 46332347 C A SYMPK Missense_Mutation p.W622C 0.31 deleterious(0.02) benign(0.289) TCGA-G3-AAV7-01 19 46332348 46332348 C A SYMPK Missense_Mutation p.W622L 0.31 tolerated(0.11) benign(0.098) TCGA-G3-AAV7-01 19 50119403 50119403 C T PRR12 Silent p.N1808N 0.27 TCGA-G3-AAV7-01 19 51769106 51769106 C T SIGLECL1 Missense_Mutation p.A127V 0.20 deleterious(0.04) benign(0.003) TCGA-G3-AAV7-01 1 100381999 100382000 AT - AGL Frame_Shift_Del p.L1432Rfs*3 0.24 TCGA-G3-AAV7-01 1 109394989 109394989 T G AKNAD1 Missense_Mutation p.N100H 0.33 deleterious(0) possibly_damaging(0.778) TCGA-G3-AAV7-01 1 151259083 151259083 G T ZNF687 Missense_Mutation p.G106W 0.12 deleterious(0) possibly_damaging(0.735) TCGA-G3-AAV7-01 1 152324696 152324696 C A FLG2 Nonsense_Mutation p.G1856* 0.16 TCGA-G3-AAV7-01 1 153941033 153941033 C G CREB3L4 Missense_Mutation p.A11G 0.43 deleterious_low_confidence(0.03) benign(0.06) TCGA-G3-AAV7-01 1 156639400 156639400 C T NES Missense_Mutation p.G1527D 0.22 deleterious(0.02) benign(0.086) TCGA-G3-AAV7-01 1 156875181 156875181 G C PEAR1 Missense_Mutation p.C91S 0.23 deleterious(0) probably_damaging(0.99) TCGA-G3-AAV7-01 1 157666784 157666784 A G FCRL3 Intron 0.50 TCGA-G3-AAV7-01 1 158532696 158532696 T A OR6P1 Silent p.G233G 0.22 TCGA-G3-AAV7-01 1 161008344 161008344 G A TSTD1 Missense_Mutation p.P44S 0.42 deleterious(0.01) probably_damaging(0.991) TCGA-G3-AAV7-01 1 167487756 167487756 C T CD247 5'UTR 0.43 TCGA-G3-AAV7-01 1 167905052 167905052 G A MPC2 Missense_Mutation p.R10W 0.17 deleterious(0.01) possibly_damaging(0.556) TCGA-G3-AAV7-01 1 169454948 169454948 G T SLC19A2 Silent p.L19L 0.36 TCGA-G3-AAV7-01 1 169833605 169833605 G A SCYL3 Missense_Mutation p.A287V 0.40 deleterious(0.04) possibly_damaging(0.723) TCGA-G3-AAV7-01 1 179631239 179631239 G A TDRD5 Missense_Mutation p.D775N 0.16 tolerated(0.13) probably_damaging(0.967) TCGA-G3-AAV7-01 1 186088414 186088414 G A HMCN1 Silent p.V3980V 0.16 TCGA-G3-AAV7-01 1 201197666 201197666 T C IGFN1 3'UTR 0.17 TCGA-G3-AAV7-01 1 231047225 231047225 C G TTC13 Missense_Mutation p.R767P 0.10 deleterious(0) probably_damaging(0.947) TCGA-G3-AAV7-01 1 46211836 46211836 A G IPP Missense_Mutation p.I83T 0.38 deleterious(0) benign(0.36) TCGA-G3-AAV7-01 1 54060500 54060500 G T GLIS1 Missense_Mutation p.L26I 0.27 deleterious_low_confidence(0) benign(0.099) TCGA-G3-AAV7-01 20 1538224 1538224 C T RP4-576H24.4 Intron 0.38 TCGA-G3-AAV7-01 21 37429758 37429758 C T SETD4 Intron 0.26 TCGA-G3-AAV7-01 22 17600295 17600295 C G CECR6 Missense_Mutation p.A575P 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.737) TCGA-G3-AAV7-01 22 21743080 21743080 G T RIMBP3B 3'UTR 0.22 TCGA-G3-AAV7-01 22 21900333 21900333 C A RIMBP3C 3'UTR 0.30 TCGA-G3-AAV7-01 22 45132983 45132983 C T PRR5 Silent p.P364P 0.35 TCGA-G3-AAV7-01 22 47193446 47193446 C T TBC1D22A Missense_Mutation p.A189V 0.26 tolerated(0.27) benign(0.012) TCGA-G3-AAV7-01 2 120414105 120414105 C T PCDP1 3'UTR 0.53 TCGA-G3-AAV7-01 2 1241734 1241734 G T SNTG2 Missense_Mutation p.G265V 0.48 tolerated(0.49) benign(0.104) TCGA-G3-AAV7-01 2 179528600 179528600 C T TTN Missense_Mutation p.E12132K 0.48 TCGA-G3-AAV7-01 2 186670171 186670171 A G FSIP2 Missense_Mutation p.M5469V 0.43 benign(0.017) TCGA-G3-AAV7-01 2 198950089 198950089 T C PLCL1 Silent p.S616S 0.06 TCGA-G3-AAV7-01 2 32703821 32703821 A G BIRC6 Missense_Mutation p.D2396G 0.11 possibly_damaging(0.76) TCGA-G3-AAV7-01 3 101450745 101450745 G A CEP97 Missense_Mutation p.R170K 0.16 tolerated(0.36) benign(0.028) TCGA-G3-AAV7-01 3 142467157 142467157 G A TRPC1 Missense_Mutation p.V163I 0.32 tolerated(0.94) possibly_damaging(0.783) TCGA-G3-AAV7-01 3 14724699 14724699 T C C3orf20 Missense_Mutation p.M160T 0.36 tolerated(0.08) benign(0.146) TCGA-G3-AAV7-01 3 183471971 183471971 C G YEATS2 Nonsense_Mutation p.S403* 0.30 TCGA-G3-AAV7-01 3 20225381 20225381 T C SGOL1 Missense_Mutation p.I47V 0.34 tolerated(0.76) benign(0.217) TCGA-G3-AAV7-01 3 40251524 40251524 C A MYRIP Missense_Mutation p.N615K 0.33 tolerated(0.17) benign(0.345) TCGA-G3-AAV7-01 3 42236385 42236385 G C TRAK1 Missense_Mutation p.M355I 0.27 tolerated(0.36) benign(0.005) TCGA-G3-AAV7-01 3 50339584 50339584 C G HYAL1 Missense_Mutation p.E268D 0.31 deleterious(0) probably_damaging(0.992) TCGA-G3-AAV7-01 3 50391187 50391187 C T CYB561D2 3'UTR 0.39 TCGA-G3-AAV7-01 4 1283683 1283683 A C MAEA 5'UTR 0.29 TCGA-G3-AAV7-01 4 4861842 4861842 G A MSX1 Silent p.K72K 0.28 TCGA-G3-AAV7-01 5 17354291 17354291 G A CTD-2139B15.2 RNA 0.27 TCGA-G3-AAV7-01 5 178419053 178419053 G T GRM6 Missense_Mutation p.P179Q 0.09 deleterious(0) probably_damaging(0.995) TCGA-G3-AAV7-01 5 42808299 42808299 C A SEPP1 Missense_Mutation p.A53S 0.32 deleterious(0) benign(0.035) TCGA-G3-AAV7-01 5 891776 891776 A C BRD9 Missense_Mutation p.D82E 0.36 tolerated(0.48) benign(0.003) TCGA-G3-AAV7-01 6 109232114 109232114 A G ARMC2 Missense_Mutation p.R346G 0.28 tolerated(1) benign(0) TCGA-G3-AAV7-01 6 26045843 26045843 C T HIST1H3C Nonsense_Mutation p.Q69* 0.26 TCGA-G3-AAV7-01 6 30115684 30115684 T C TRIM40 3'UTR 0.25 TCGA-G3-AAV7-01 6 33368273 33368273 C T KIFC1 Intron 0.19 TCGA-G3-AAV7-01 6 33405540 33405540 G T SYNGAP1 Silent p.L286L 0.27 TCGA-G3-AAV7-01 6 73001644 73001644 C A RIMS1 Silent p.R1249R 0.24 TCGA-G3-AAV7-01 6 96034580 96034596 TCTGAACTTAACTTGGA ACCTC MANEA In_Frame_Del p.S89_D94delinsTS 0.30 TCGA-G3-AAV7-01 6 97053798 97053798 A G FHL5 Missense_Mutation p.K119E 0.21 tolerated(0.08) benign(0.21) TCGA-G3-AAV7-01 7 100184184 100184184 T G FBXO24 5'Flank 0.22 TCGA-G3-AAV7-01 7 104767483 104767483 A G SRPK2 Silent p.Y593Y 0.36 TCGA-G3-AAV7-01 7 137170153 137170153 T A DGKI Silent p.S798S 0.33 TCGA-G3-AAV7-01 7 141416059 141416059 C T WEE2 Missense_Mutation p.P193S 0.35 deleterious(0.02) benign(0.178) TCGA-G3-AAV7-01 7 157959681 157959681 G C PTPRN2 Silent p.A284A 0.29 TCGA-G3-AAV7-01 7 158540904 158540904 C T ESYT2 Missense_Mutation p.R569H 0.06 tolerated(0.08) benign(0.009) TCGA-G3-AAV7-01 7 73790724 73790724 G C CLIP2 Missense_Mutation p.G665R 0.03 deleterious(0.01) benign(0.342) TCGA-G3-AAV7-01 7 878543 878543 A C SUN1 Silent p.A62A 0.20 TCGA-G3-AAV7-01 8 144660509 144660510 - CCGGC NAPRT1 5'UTR 0.40 TCGA-G3-AAV7-01 8 144990483 144990518 GCGGGAGCCGGCCCGGGAGCCGGTGCGCGAGCCGGT - PLEC In_Frame_Del p.T4628_R4639del 0.19 TCGA-G3-AAV7-01 9 100117288 100117288 C G CCDC180 Missense_Mutation p.Q1132E 0.42 tolerated(1) benign(0) TCGA-G3-AAV7-01 9 115913282 115913282 C T SLC31A2 5'UTR 0.06 TCGA-G3-AAV7-01 9 138457313 138457313 C A PAEP Missense_Mutation p.P160H 0.32 deleterious(0.04) possibly_damaging(0.87) TCGA-G3-AAV7-01 9 35703773 35703773 T C TLN1 Missense_Mutation p.K2119R 0.30 tolerated(0.08) benign(0.104) TCGA-G3-AAV7-01 9 5467958 5467958 C T CD274 3'UTR 0.22 TCGA-G3-AAV7-01 X 125954737 125954737 C G CXorf64 Missense_Mutation p.S39C 0.26 deleterious(0.04) probably_damaging(0.966) TCGA-G3-AAV7-01 X 13778504 13778504 C G OFD1 Missense_Mutation p.A642G 0.60 deleterious(0.02) benign(0.338) TCGA-G3-AAV7-01 X 151304139 151304139 G C MAGEA10 5'UTR 0.43 TCGA-G3-AAV7-01 X 47485398 47485398 G A CFP Intron 0.57 TCGA-G3-AAV7-01 X 77160846 77160846 G A COX7B 3'UTR 0.65 TCGA-G3-AAV7-01 X 7811110 7811110 G T VCX 5'UTR 0.64 TCGA-GJ-A3OU-01 10 81154141 81154141 C A ZCCHC24 Missense_Mutation p.G168V 0.06 deleterious(0) probably_damaging(1) TCGA-GJ-A3OU-01 11 18266927 18266927 G A SAA2 Silent p.Y122Y 0.09 TCGA-GJ-A3OU-01 11 62364838 62364838 G A MTA2 Nonsense_Mutation p.Q215* 0.13 TCGA-GJ-A3OU-01 11 62364839 62364839 C T MTA2 Silent p.R214R 0.13 TCGA-GJ-A3OU-01 12 110457106 110457106 T G ANKRD13A Missense_Mutation p.L236R 0.11 deleterious(0) probably_damaging(0.983) TCGA-GJ-A3OU-01 12 49692075 49692075 T G PRPH Missense_Mutation p.V451G 0.09 deleterious(0) possibly_damaging(0.811) TCGA-GJ-A3OU-01 12 55368184 55368184 C T TESPA1 Missense_Mutation p.G55R 0.08 deleterious(0) probably_damaging(0.971) TCGA-GJ-A3OU-01 12 97331084 97331084 G C NEDD1 Missense_Mutation p.A351P 0.14 tolerated(0.26) benign(0.012) TCGA-GJ-A3OU-01 14 103357754 103357754 G A TRAF3 Silent p.K273K 0.14 TCGA-GJ-A3OU-01 14 104638072 104638072 C T KIF26A Silent p.L376L 0.06 TCGA-GJ-A3OU-01 15 78894061 78894061 A C CHRNA3 Missense_Mutation p.L308R 0.18 deleterious(0) probably_damaging(1) TCGA-GJ-A3OU-01 16 1250720 1250720 T A CACNA1H Missense_Mutation p.I375N 0.11 deleterious(0) probably_damaging(0.999) TCGA-GJ-A3OU-01 16 1691138 1691138 A C CRAMP1L Splice_Site p.X260_splice 0.20 TCGA-GJ-A3OU-01 16 55562430 55562430 T A LPCAT2 Missense_Mutation p.D151E 0.15 deleterious(0) probably_damaging(1) TCGA-GJ-A3OU-01 16 88752824 88752824 C T SNAI3 5'UTR 0.19 TCGA-GJ-A3OU-01 17 44954034 44954034 G C WNT9B Missense_Mutation p.E342Q 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-GJ-A3OU-01 17 56586048 56586048 G T MTMR4 Missense_Mutation p.Q150K 0.14 deleterious(0.04) benign(0.146) TCGA-GJ-A3OU-01 17 7577115 7577115 A G TP53 Missense_Mutation p.C275R 0.17 deleterious(0) probably_damaging(0.991) TCGA-GJ-A3OU-01 19 10121026 10121026 G C COL5A3 Silent p.A12A 0.15 TCGA-GJ-A3OU-01 19 52537481 52537481 G C ZNF432 Missense_Mutation p.P484R 0.11 deleterious(0) probably_damaging(1) TCGA-GJ-A3OU-01 19 55435161 55435161 C A NLRP7 Missense_Mutation p.D1021Y 0.07 deleterious(0) possibly_damaging(0.896) TCGA-GJ-A3OU-01 19 8808811 8808811 A T ACTL9 Missense_Mutation p.C81S 0.11 tolerated(0.41) benign(0.026) TCGA-GJ-A3OU-01 19 9267979 9267979 T C ZNF317 Silent p.F66F 0.18 TCGA-GJ-A3OU-01 1 155449069 155449069 G T ASH1L Missense_Mutation p.P1198T 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GJ-A3OU-01 1 158646003 158646003 T C SPTA1 Missense_Mutation p.D347G 0.30 deleterious(0.01) possibly_damaging(0.794) TCGA-GJ-A3OU-01 1 169775144 169775144 G C C1orf112 Splice_Site p.X160_splice 0.22 TCGA-GJ-A3OU-01 1 180471265 180471265 A C ACBD6 Missense_Mutation p.F46C 0.24 deleterious(0) probably_damaging(1) TCGA-GJ-A3OU-01 1 192545036 192545036 G A RGS1 Missense_Mutation p.M38I 0.05 tolerated(0.31) benign(0) TCGA-GJ-A3OU-01 1 211842562 211842562 G C NEK2 Missense_Mutation p.P293R 0.18 tolerated(0.24) benign(0.001) TCGA-GJ-A3OU-01 1 227174396 227174396 G T ADCK3 Missense_Mutation p.E634D 0.10 tolerated(0.34) benign(0.005) TCGA-GJ-A3OU-01 1 228328057 228328057 A - GUK1 Frame_Shift_Del p.P19Rfs*12 0.12 TCGA-GJ-A3OU-01 1 244999029 244999029 C G COX20 Missense_Mutation p.P5A 0.19 tolerated(0.27) benign(0.067) TCGA-GJ-A3OU-01 1 42047687 42047687 G T HIVEP3 Missense_Mutation p.L928M 0.07 probably_damaging(0.999) TCGA-GJ-A3OU-01 1 95307574 95307574 G C SLC44A3 Missense_Mutation p.W260S 0.06 deleterious(0) probably_damaging(0.999) TCGA-GJ-A3OU-01 20 13797788 13797788 G A NDUFAF5 Missense_Mutation p.A324T 0.11 deleterious(0.03) probably_damaging(0.995) TCGA-GJ-A3OU-01 20 60791400 60791400 C T HRH3 Missense_Mutation p.E334K 0.14 tolerated(0.45) possibly_damaging(0.484) TCGA-GJ-A3OU-01 22 46656291 46656291 A G PKDREJ Missense_Mutation p.S977P 0.04 tolerated(0.22) benign(0.01) TCGA-GJ-A3OU-01 2 1271232 1271232 C A SNTG2 Silent p.I391I 0.12 TCGA-GJ-A3OU-01 2 128877939 128877939 C T UGGT1 Silent p.H294H 0.16 TCGA-GJ-A3OU-01 2 150294172 150294172 C T LYPD6 5'UTR 0.18 TCGA-GJ-A3OU-01 2 166626814 166626814 A C GALNT3 Missense_Mutation p.L133V 0.11 tolerated(0.06) probably_damaging(0.996) TCGA-GJ-A3OU-01 2 238726871 238726871 A G RBM44 Missense_Mutation p.T438A 0.07 tolerated(0.49) benign(0.027) TCGA-GJ-A3OU-01 2 40656037 40656037 C T SLC8A1 Missense_Mutation p.G462R 0.08 deleterious(0) probably_damaging(1) TCGA-GJ-A3OU-01 2 58276008 58276008 A G VRK2 Silent p.P14P 0.11 TCGA-GJ-A3OU-01 3 127441291 127441291 G C MGLL Missense_Mutation p.F127L 0.12 tolerated(0.06) benign(0.311) TCGA-GJ-A3OU-01 3 142030413 142030413 A T XRN1 Silent p.S1687S 0.16 TCGA-GJ-A3OU-01 3 38805061 38805061 C T SCN10A Missense_Mutation p.R209H 0.07 deleterious(0) possibly_damaging(0.751) TCGA-GJ-A3OU-01 3 50416567 50416567 G T CACNA2D2 Missense_Mutation p.R406S 0.23 deleterious(0) probably_damaging(0.999) TCGA-GJ-A3OU-01 3 53834294 53834294 C T CACNA1D Missense_Mutation p.H1668Y 0.11 deleterious(0) probably_damaging(0.99) TCGA-GJ-A3OU-01 3 58552443 58552443 G C FAM107A Intron 0.12 TCGA-GJ-A3OU-01 3 71008538 71008538 G T FOXP1 Missense_Mutation p.P634T 0.12 tolerated(0.24) benign(0.022) TCGA-GJ-A3OU-01 4 44449696 44449696 C A KCTD8 Missense_Mutation p.R282L 0.13 deleterious(0.04) probably_damaging(0.987) TCGA-GJ-A3OU-01 4 77204597 77204597 C T FAM47E Nonsense_Mutation p.R390* 0.10 TCGA-GJ-A3OU-01 5 111066610 111066610 T C NREP 3'UTR 0.12 TCGA-GJ-A3OU-01 5 140203606 140203606 A G PCDHA5 Missense_Mutation p.Y749C 0.09 tolerated_low_confidence(0.05) benign(0.061) TCGA-GJ-A3OU-01 5 140215307 140215307 G A PCDHA7 Missense_Mutation p.D447N 0.08 deleterious_low_confidence(0.01) probably_damaging(0.972) TCGA-GJ-A3OU-01 5 68609823 68609823 C G CCDC125 Missense_Mutation p.E119Q 0.11 deleterious(0.05) benign(0.002) TCGA-GJ-A3OU-01 6 26017773 26017773 G A HIST1H1A Missense_Mutation p.A63V 0.10 tolerated(0.11) probably_damaging(0.996) TCGA-GJ-A3OU-01 6 27101160 27101160 G A HIST1H2AG Missense_Mutation p.A104T 0.13 deleterious_low_confidence(0.02) possibly_damaging(0.589) TCGA-GJ-A3OU-01 6 44394452 44394452 G C CDC5L Missense_Mutation p.E628D 0.10 tolerated(0.63) benign(0.004) TCGA-GJ-A3OU-01 6 56504503 56504503 T C DST Silent p.A359A 0.13 TCGA-GJ-A3OU-01 6 70964854 70964854 G A COL9A1 Missense_Mutation p.T537M 0.11 benign(0.054) TCGA-GJ-A3OU-01 7 130007818 130007818 C T CPA5 Silent p.I370I 0.11 TCGA-GJ-A3OU-01 7 150883497 150883497 C A ASB10 Missense_Mutation p.R189L 0.08 tolerated(0.2) benign(0.175) TCGA-GJ-A3OU-01 7 43351516 43351516 T C HECW1 Missense_Mutation p.V61A 0.20 tolerated_low_confidence(0.12) benign(0.129) TCGA-GJ-A3OU-01 7 5529530 5529530 C A FBXL18 Intron 0.15 TCGA-GJ-A3OU-01 7 57187393 57187393 C A ZNF479 3'UTR 0.15 TCGA-GJ-A3OU-01 7 99047916 99047917 - A CPSF4 Frame_Shift_Ins p.C110Mfs*19 0.18 TCGA-GJ-A3OU-01 8 12886079 12886079 T C KIAA1456 3'UTR 0.31 TCGA-GJ-A3OU-01 8 2823435 2823435 G A CSMD1 Nonsense_Mutation p.Q3048* 0.06 TCGA-GJ-A3OU-01 8 75737717 75737717 G A PI15 Missense_Mutation p.R78Q 0.55 deleterious(0) probably_damaging(0.998) TCGA-GJ-A3OU-01 9 101589127 101589127 G A GALNT12 Missense_Mutation p.R212Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-GJ-A3OU-01 9 135960336 135960336 G A CELP RNA 0.29 TCGA-GJ-A3OU-01 9 72071259 72071259 A T APBA1 Silent p.P564P 0.16 TCGA-GJ-A3OU-01 X 102192893 102192893 T C RAB40AL Missense_Mutation p.I216T 0.05 tolerated_low_confidence(0.61) benign(0.019) TCGA-GJ-A3OU-01 X 151869393 151869393 C T MAGEA6 Missense_Mutation p.A28V 0.38 tolerated(0.2) benign(0.376) TCGA-GJ-A3OU-01 X 24861714 24861714 G A POLA1 Missense_Mutation p.A1317T 0.09 tolerated(0.83) benign(0.002) TCGA-GJ-A6C0-01 10 5788372 5788372 C T FAM208B Silent p.Y996Y 0.08 TCGA-GJ-A6C0-01 10 75532078 75532078 C T AC022400.2 Missense_Mutation p.A101T 0.50 unknown(0) TCGA-GJ-A6C0-01 11 123676932 123676932 G T OR6M1 Silent p.T42T 0.15 TCGA-GJ-A6C0-01 11 124794662 124794662 G C HEPACAM Missense_Mutation p.T130S 0.35 tolerated(0.06) possibly_damaging(0.627) TCGA-GJ-A6C0-01 11 18159634 18159634 G T MRGPRX3 Silent p.L295L 0.33 TCGA-GJ-A6C0-01 11 56000549 56000549 A G OR5T2 Missense_Mutation p.L38P 0.41 tolerated_low_confidence(0.09) benign(0.143) TCGA-GJ-A6C0-01 11 60694685 60694685 G T TMEM132A Missense_Mutation p.G37V 0.42 tolerated(0.07) benign(0.189) TCGA-GJ-A6C0-01 11 62334990 62334990 G C EEF1G Missense_Mutation p.P178R 0.19 deleterious(0.01) benign(0.403) TCGA-GJ-A6C0-01 11 76814313 76814313 T C OMP Missense_Mutation p.V143A 0.29 deleterious_low_confidence(0.02) benign(0.055) TCGA-GJ-A6C0-01 12 109042555 109042555 C T CORO1C Nonsense_Mutation p.W377* 0.35 TCGA-GJ-A6C0-01 12 112622701 112622701 C G HECTD4 Missense_Mutation p.A3211P 0.47 possibly_damaging(0.884) TCGA-GJ-A6C0-01 12 124824871 124824871 C T NCOR2 Silent p.T1819T 0.27 TCGA-GJ-A6C0-01 12 129360597 129360597 G A GLT1D1 Silent p.R69R 0.10 TCGA-GJ-A6C0-01 12 133201295 133201295 C T POLE Silent p.Q2283Q 0.32 TCGA-GJ-A6C0-01 12 50186524 50186524 G A NCKAP5L Missense_Mutation p.P1196S 0.29 deleterious(0.04) benign(0.164) TCGA-GJ-A6C0-01 12 58087958 58087958 C T OS9 Missense_Mutation p.T5M 0.26 deleterious(0.04) benign(0.313) TCGA-GJ-A6C0-01 12 7287981 7287981 C G CLSTN3 Missense_Mutation p.R148G 0.38 tolerated(0.18) benign(0.011) TCGA-GJ-A6C0-01 13 58208334 58208334 G A PCDH17 Missense_Mutation p.V552M 0.31 deleterious(0) probably_damaging(0.983) TCGA-GJ-A6C0-01 14 45658377 45658377 G A FANCM Missense_Mutation p.V1718M 0.44 tolerated(0.11) benign(0.007) TCGA-GJ-A6C0-01 14 61747549 61747549 C T TMEM30B Missense_Mutation p.G106D 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-GJ-A6C0-01 14 65453640 65453640 A G FNTB 5'UTR 0.29 TCGA-GJ-A6C0-01 14 73729395 73729395 C T PAPLN Silent p.D834D 0.09 TCGA-GJ-A6C0-01 14 75359658 75359658 C T DLST Silent p.P188P 0.10 TCGA-GJ-A6C0-01 14 75590774 75590774 C T NEK9 Silent p.L124L 0.06 TCGA-GJ-A6C0-01 15 33025272 33025272 C T GREM1 3'UTR 0.36 TCGA-GJ-A6C0-01 15 65411134 65411134 C T PDCD7 Missense_Mutation p.G460D 0.47 deleterious(0.01) probably_damaging(0.957) TCGA-GJ-A6C0-01 15 81593848 81593848 T G IL16 Missense_Mutation p.L1105V 0.29 deleterious(0) possibly_damaging(0.834) TCGA-GJ-A6C0-01 16 31414896 31414896 C T ITGAD Nonsense_Mutation p.Q212* 0.35 TCGA-GJ-A6C0-01 16 56870513 56870513 C T NUP93 Missense_Mutation p.P595S 0.13 tolerated(0.05) possibly_damaging(0.528) TCGA-GJ-A6C0-01 16 57685514 57685514 G C GPR56 Missense_Mutation p.S156T 0.33 tolerated(0.54) benign(0.002) TCGA-GJ-A6C0-01 16 69776359 69776359 G A NOB1 Missense_Mutation p.P372L 0.09 deleterious(0) probably_damaging(1) TCGA-GJ-A6C0-01 16 70363839 70363839 G A DDX19B Silent p.L297L 0.26 TCGA-GJ-A6C0-01 17 27940598 27940598 T C ANKRD13B Nonstop_Mutation p.*627Qext*108 0.40 TCGA-GJ-A6C0-01 17 37819182 37819182 C T STARD3 3'UTR 0.13 TCGA-GJ-A6C0-01 17 54940211 54940211 C G DGKE 3'UTR 0.42 TCGA-GJ-A6C0-01 17 66268836 66268836 A G SLC16A6 Missense_Mutation p.I150T 0.24 deleterious(0) benign(0.122) TCGA-GJ-A6C0-01 17 72869123 72869123 G A FDXR 5'UTR 0.33 TCGA-GJ-A6C0-01 17 79937057 79937057 C A ASPSCR1 Intron 0.23 TCGA-GJ-A6C0-01 18 13666480 13666480 T C FAM210A Silent p.%3D 0.42 TCGA-GJ-A6C0-01 18 6985309 6985309 T A LAMA1 Missense_Mutation p.N1863Y 0.31 tolerated(0.05) benign(0.105) TCGA-GJ-A6C0-01 19 20278100 20278100 G A ZNF486 5'UTR 0.14 TCGA-GJ-A6C0-01 19 38385769 38385769 T A WDR87 Missense_Mutation p.M153L 0.48 benign(0.023) TCGA-GJ-A6C0-01 19 46973078 46973078 A T PNMAL1 Silent p.P405P 0.42 TCGA-GJ-A6C0-01 19 47231256 47231256 G C STRN4 Missense_Mutation p.R350G 0.21 deleterious(0.01) probably_damaging(0.994) TCGA-GJ-A6C0-01 19 55148029 55148029 C T LILRB1 Missense_Mutation p.P580S 0.08 deleterious(0.04) possibly_damaging(0.624) TCGA-GJ-A6C0-01 19 58967301 58967301 G T ZNF324B Silent p.R330R 0.31 TCGA-GJ-A6C0-01 1 108115914 108115914 C T VAV3 3'UTR 0.30 TCGA-GJ-A6C0-01 1 145417369 145417369 G T HFE2 3'UTR 0.20 TCGA-GJ-A6C0-01 1 152681721 152681721 G A LCE4A Missense_Mutation p.G57D 0.28 tolerated_low_confidence(0.17) unknown(0) TCGA-GJ-A6C0-01 1 153902700 153902700 G A DENND4B 3'UTR 0.35 TCGA-GJ-A6C0-01 1 154909135 154909135 C A PMVK Silent p.R9R 0.51 TCGA-GJ-A6C0-01 1 154909136 154909136 C A PMVK Missense_Mutation p.R9L 0.49 tolerated(0.08) benign(0.002) TCGA-GJ-A6C0-01 1 205632672 205632672 C T SLC45A3 Missense_Mutation p.G83S 0.06 deleterious(0) probably_damaging(0.999) TCGA-GJ-A6C0-01 1 41483397 41483397 C T SLFNL1 Silent p.L289L 0.22 TCGA-GJ-A6C0-01 1 57406665 57406665 T C C8B Missense_Mutation p.M419V 0.41 tolerated(0.45) benign(0.008) TCGA-GJ-A6C0-01 1 94564351 94564351 A G ABCA4 Missense_Mutation p.V256A 0.38 tolerated(0.62) benign(0.2) TCGA-GJ-A6C0-01 20 4228867 4228867 G T ADRA1D Nonsense_Mutation p.C246* 0.41 TCGA-GJ-A6C0-01 20 48497559 48497559 C T SLC9A8 Silent p.I435I 0.30 TCGA-GJ-A6C0-01 20 58349512 58349512 G A PHACTR3 Missense_Mutation p.D381N 0.14 deleterious(0.03) probably_damaging(0.987) TCGA-GJ-A6C0-01 20 62594086 62594086 C T ZNF512B Missense_Mutation p.G673S 0.34 tolerated(0.19) benign(0.03) TCGA-GJ-A6C0-01 22 19429341 19429341 G A C22orf39 3'UTR 0.47 TCGA-GJ-A6C0-01 22 31845450 31845450 A C EIF4ENIF1 Missense_Mutation p.L551W 0.32 deleterious(0.01) probably_damaging(0.983) TCGA-GJ-A6C0-01 22 41574846 41574846 T C EP300 Silent p.A2377A 0.34 TCGA-GJ-A6C0-01 22 46782348 46782348 G A CELSR1 Silent p.N2230N 0.57 TCGA-GJ-A6C0-01 2 1204904 1204904 C A SNTG2 Missense_Mutation p.T236K 0.56 deleterious(0.02) benign(0.046) TCGA-GJ-A6C0-01 2 125672720 125672720 T C CNTNAP5 3'UTR 0.04 TCGA-GJ-A6C0-01 2 160206490 160206490 G A BAZ2B Missense_Mutation p.T1531I 0.08 benign(0.056) TCGA-GJ-A6C0-01 2 173460757 173460757 G A PDK1 3'UTR 0.31 TCGA-GJ-A6C0-01 2 18113275 18113275 G T KCNS3 Missense_Mutation p.G334C 0.39 deleterious(0) probably_damaging(0.999) TCGA-GJ-A6C0-01 2 200820961 200820961 G T C2orf47 Missense_Mutation p.G147V 0.24 deleterious(0) probably_damaging(0.959) TCGA-GJ-A6C0-01 2 237074543 237074543 G A GBX2 3'UTR 0.37 TCGA-GJ-A6C0-01 2 38301745 38301745 G A CYP1B1 Nonsense_Mutation p.Q263* 0.05 TCGA-GJ-A6C0-01 3 126260674 126260674 G A CHST13 Silent p.P93P 0.30 TCGA-GJ-A6C0-01 3 160395171 160395171 C T ARL14 Nonsense_Mutation p.Q13* 0.06 TCGA-GJ-A6C0-01 3 64085071 64085071 T C PRICKLE2 Missense_Mutation p.S731G 0.38 tolerated(0.49) benign(0.001) TCGA-GJ-A6C0-01 4 169108554 169108554 C T ANXA10 Missense_Mutation p.A315V 0.11 tolerated(0.14) possibly_damaging(0.672) TCGA-GJ-A6C0-01 4 57842963 57842963 C T NOA1 Silent p.R263R 0.14 TCGA-GJ-A6C0-01 5 179069453 179069453 G A C5orf60 Missense_Mutation p.R241C 0.51 deleterious_low_confidence(0.01) benign(0.14) TCGA-GJ-A6C0-01 5 2751518 2751518 G T IRX2 Missense_Mutation p.P4T 0.40 deleterious(0) probably_damaging(0.994) TCGA-GJ-A6C0-01 5 36976361 36976361 C T NIPBL Missense_Mutation p.S451F 0.28 tolerated_low_confidence(0.07) benign(0.015) TCGA-GJ-A6C0-01 6 30574619 30574619 C T PPP1R10 Missense_Mutation p.A133T 0.07 deleterious(0) probably_damaging(0.996) TCGA-GJ-A6C0-01 6 57018812 57018812 G A ZNF451 Missense_Mutation p.A1013T 0.07 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-GJ-A6C0-01 6 84233979 84233979 G A PRSS35 Silent p.L273L 0.30 TCGA-GJ-A6C0-01 7 129770641 129770641 A G KLHDC10 3'UTR 0.05 TCGA-GJ-A6C0-01 7 22347988 22347988 A T RAPGEF5 Missense_Mutation p.L64H 0.28 tolerated(0.39) possibly_damaging(0.855) TCGA-GJ-A6C0-01 7 43548503 43548503 G A HECW1 Intron 0.35 TCGA-GJ-A6C0-01 8 1871942 1871942 C T ARHGEF10 Missense_Mutation p.S797F 0.09 deleterious(0) possibly_damaging(0.787) TCGA-GJ-A6C0-01 8 23104433 23104433 G A CHMP7 Silent p.R75R 0.42 TCGA-GJ-A6C0-01 8 39695755 39695755 G A ADAM2 5'UTR 0.46 TCGA-GJ-A6C0-01 8 39785854 39785854 G A IDO1 3'UTR 0.42 TCGA-GJ-A6C0-01 8 42692993 42692993 A G THAP1 3'UTR 0.50 TCGA-GJ-A6C0-01 8 48732069 48732069 A G PRKDC Silent p.N3112N 0.22 TCGA-GJ-A6C0-01 9 130697971 130697971 G C DPM2 3'UTR 0.38 TCGA-GJ-A6C0-01 X 114422835 114422835 G A LRCH2 Missense_Mutation p.P150S 0.03 deleterious(0) probably_damaging(1) TCGA-GJ-A6C0-01 X 50378093 50378093 C T SHROOM4 Missense_Mutation p.C327Y 0.31 deleterious(0) probably_damaging(0.919) TCGA-GJ-A6C0-01 X 75648383 75648383 G A MAGEE1 Silent p.A20A 0.11 TCGA-GJ-A9DB-01 10 118609206 118609206 C T ENO4 Silent p.T43T 0.35 TCGA-GJ-A9DB-01 10 131761727 131761727 G T EBF3 Silent p.S65S 0.36 TCGA-GJ-A9DB-01 10 16979768 16979768 T C CUBN Missense_Mutation p.S1917G 0.17 tolerated(0.86) benign(0.006) TCGA-GJ-A9DB-01 10 26432443 26432443 G C MYO3A Missense_Mutation p.D777H 0.10 deleterious(0) probably_damaging(0.968) TCGA-GJ-A9DB-01 10 4889922 4889922 C T AKR1E2 3'UTR 0.38 TCGA-GJ-A9DB-01 10 71244958 71244958 C A TSPAN15 Missense_Mutation p.T115N 0.05 deleterious(0) benign(0.016) TCGA-GJ-A9DB-01 10 88728413 88728413 C G ADIRF Intron 0.28 TCGA-GJ-A9DB-01 11 112064319 112064319 G A BCO2 Missense_Mutation p.R139Q 0.32 deleterious(0.03) possibly_damaging(0.899) TCGA-GJ-A9DB-01 11 112088799 112088799 A T BCO2 3'UTR 0.67 TCGA-GJ-A9DB-01 11 114453434 114453434 C G NXPE4 Missense_Mutation p.D136H 0.21 deleterious(0.01) possibly_damaging(0.712) TCGA-GJ-A9DB-01 11 11990020 11990020 G A DKK3 Silent p.D150D 0.29 TCGA-GJ-A9DB-01 11 124440405 124440405 G A OR8A1 Silent p.L147L 0.31 TCGA-GJ-A9DB-01 11 1309926 1309926 G A TOLLIP Silent p.D149D 0.36 TCGA-GJ-A9DB-01 11 18733863 18733863 A G IGSF22 Missense_Mutation p.W722R 0.30 deleterious(0) possibly_damaging(0.745) TCGA-GJ-A9DB-01 11 4676051 4676051 A G OR51E1 3'UTR 0.21 TCGA-GJ-A9DB-01 11 57513122 57513122 T G BTBD18 Missense_Mutation p.K208T 0.36 deleterious_low_confidence(0) benign(0.418) TCGA-GJ-A9DB-01 11 5905748 5905748 T C OR52E4 Missense_Mutation p.S76P 0.19 deleterious(0) probably_damaging(0.976) TCGA-GJ-A9DB-01 11 92087690 92087690 T C FAT3 Silent p.Y804Y 0.37 TCGA-GJ-A9DB-01 12 125470692 125470692 C A DHX37 Nonsense_Mutation p.E76* 0.29 TCGA-GJ-A9DB-01 12 42717863 42717863 T A ZCRB1 Silent p.V14V 0.28 TCGA-GJ-A9DB-01 12 49491852 49491852 C A LMBR1L Missense_Mutation p.R426L 0.25 deleterious(0) probably_damaging(0.998) TCGA-GJ-A9DB-01 13 100637938 100637938 G T ZIC2 3'UTR 0.55 TCGA-GJ-A9DB-01 13 106118570 106118570 G A DAOA 5'Flank 0.28 TCGA-GJ-A9DB-01 14 105958483 105958483 A T C14orf80 Missense_Mutation p.Q89L 0.35 tolerated(0.09) benign(0.027) TCGA-GJ-A9DB-01 14 36986874 36986874 G C NKX2-1 Missense_Mutation p.T272S 0.11 tolerated(1) benign(0) TCGA-GJ-A9DB-01 14 50862544 50862544 A G CDKL1 Missense_Mutation p.Y16H 0.30 deleterious(0) probably_damaging(0.999) TCGA-GJ-A9DB-01 14 70235936 70235936 G C SRSF5 Missense_Mutation p.V112L 0.18 deleterious(0) probably_damaging(0.994) TCGA-GJ-A9DB-01 14 75130767 75130767 C T AREL1 Nonsense_Mutation p.W735* 0.28 TCGA-GJ-A9DB-01 15 51289823 51289823 A G AP4E1 Missense_Mutation p.M883V 0.21 tolerated_low_confidence(0.48) benign(0.004) TCGA-GJ-A9DB-01 15 82444220 82444220 C T EFTUD1 Missense_Mutation p.A859T 0.33 tolerated(0.25) benign(0.001) TCGA-GJ-A9DB-01 15 91450018 91450018 C A MAN2A2 Missense_Mutation p.S295Y 0.10 deleterious(0) possibly_damaging(0.776) TCGA-GJ-A9DB-01 16 2239147 2239147 C T CASKIN1 Silent p.L166L 0.37 TCGA-GJ-A9DB-01 16 29675716 29675716 G A SPN Missense_Mutation p.V223I 0.22 tolerated(0.5) possibly_damaging(0.621) TCGA-GJ-A9DB-01 16 30748580 30748584 CAAGG - SRCAP Frame_Shift_Del p.Q2407Gfs*34 0.31 TCGA-GJ-A9DB-01 16 3613191 3613191 C T NLRC3 Missense_Mutation p.V630M 0.36 deleterious(0.03) benign(0.015) TCGA-GJ-A9DB-01 16 57788908 57788908 A C KATNB1 Missense_Mutation p.N432T 0.32 tolerated(0.54) benign(0.026) TCGA-GJ-A9DB-01 16 67263800 67263800 G A FHOD1 Missense_Mutation p.T1103I 0.29 deleterious(0.04) benign(0.059) TCGA-GJ-A9DB-01 16 88713210 88713210 G T CYBA Missense_Mutation p.F80L 0.33 tolerated(0.75) benign(0.023) TCGA-GJ-A9DB-01 16 89349353 89349353 C A ANKRD11 Missense_Mutation p.E1199D 0.22 benign(0.032) TCGA-GJ-A9DB-01 17 4451500 4451500 A G MYBBP1A Silent p.N554N 0.25 TCGA-GJ-A9DB-01 17 67243677 67243677 T C ABCA5 3'UTR 0.17 TCGA-GJ-A9DB-01 17 73636256 73636256 G T SMIM5 5'UTR 0.27 TCGA-GJ-A9DB-01 18 33077858 33077858 T A INO80C 5'UTR 0.28 TCGA-GJ-A9DB-01 19 1119995 1119995 T C SBNO2 Missense_Mutation p.K393E 0.17 deleterious(0) probably_damaging(0.952) TCGA-GJ-A9DB-01 19 12461659 12461659 G C ZNF442 Missense_Mutation p.P247R 0.18 tolerated(0.54) benign(0.012) TCGA-GJ-A9DB-01 19 1470246 1470246 C A APC2 3'UTR 0.44 TCGA-GJ-A9DB-01 19 19217109 19217109 G A SLC25A42 Missense_Mutation p.G138S 0.12 deleterious(0) probably_damaging(0.995) TCGA-GJ-A9DB-01 19 22193718 22193718 G C ZNF208 5'UTR 0.31 TCGA-GJ-A9DB-01 19 36686037 36686037 C T ZNF565 Missense_Mutation p.V11M 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-GJ-A9DB-01 19 43093887 43093887 G T CEACAM8 Missense_Mutation p.P142Q 0.24 tolerated(0.47) benign(0.014) TCGA-GJ-A9DB-01 19 46394252 46394252 C T MYPOP Missense_Mutation p.A277T 0.42 tolerated(0.64) benign(0.008) TCGA-GJ-A9DB-01 19 4683489 4683489 C A DPP9 Missense_Mutation p.K777N 0.27 deleterious(0) probably_damaging(1) TCGA-GJ-A9DB-01 19 51507011 51507011 C T KLK9 Silent p.S184S 0.32 TCGA-GJ-A9DB-01 19 53761895 53761895 G T VN1R2 Silent p.G89G 0.33 TCGA-GJ-A9DB-01 19 7593583 7593583 G A MCOLN1 Silent p.L326L 0.35 TCGA-GJ-A9DB-01 1 153233515 153233515 C T LOR Silent p.G30G 0.05 TCGA-GJ-A9DB-01 1 15653435 15653435 T A FHAD1 Intron 0.30 TCGA-GJ-A9DB-01 1 157803090 157803090 C A CD5L Missense_Mutation p.D311Y 0.22 deleterious(0) probably_damaging(1) TCGA-GJ-A9DB-01 1 180240952 180240952 C G LHX4 Intron 0.34 TCGA-GJ-A9DB-01 1 186277296 186277296 T C PRG4 Silent p.S815S 0.41 TCGA-GJ-A9DB-01 1 205027106 205027106 C T CNTN2 Missense_Mutation p.P43L 0.30 deleterious(0) probably_damaging(1) TCGA-GJ-A9DB-01 1 229631653 229631653 T C NUP133 Missense_Mutation p.T321A 0.31 tolerated(1) benign(0) TCGA-GJ-A9DB-01 1 23370953 23370953 G C KDM1A Missense_Mutation p.G184A 0.17 tolerated_low_confidence(0.49) benign(0.039) TCGA-GJ-A9DB-01 1 236703931 236703931 T C LGALS8 Missense_Mutation p.L138P 0.29 deleterious(0) probably_damaging(0.99) TCGA-GJ-A9DB-01 1 32193549 32193549 C T BAI2 Intron 0.42 TCGA-GJ-A9DB-01 1 36565003 36565003 G C COL8A2 Silent p.P93P 0.31 TCGA-GJ-A9DB-01 1 42041241 42041241 C T HIVEP3 Silent p.P1727P 0.34 TCGA-GJ-A9DB-01 1 47610597 47610597 C T CYP4A22 Missense_Mutation p.L393F 0.31 deleterious(0) possibly_damaging(0.539) TCGA-GJ-A9DB-01 1 6214807 6214807 C T CHD5 Missense_Mutation p.V220I 0.28 tolerated(0.13) benign(0.358) TCGA-GJ-A9DB-01 1 63788897 63788897 C T FOXD3 Silent p.D56D 0.35 TCGA-GJ-A9DB-01 21 11021170 11021170 T G BAGE2 RNA 0.05 TCGA-GJ-A9DB-01 21 15013824 15013824 G A POTED Silent p.K564K 0.28 TCGA-GJ-A9DB-01 21 34399755 34399755 C A OLIG2 Silent p.S195S 0.30 TCGA-GJ-A9DB-01 21 42552186 42552186 T G BACE2 Intron 0.31 TCGA-GJ-A9DB-01 21 42609437 42609437 C A BACE2 Intron 0.32 TCGA-GJ-A9DB-01 2 127808484 127808484 G T BIN1 Missense_Mutation p.S489Y 0.15 deleterious(0) possibly_damaging(0.87) TCGA-GJ-A9DB-01 2 131904528 131904528 A G PLEKHB2 3'UTR 0.38 TCGA-GJ-A9DB-01 2 132919229 132919229 C T ANKRD30BL Missense_Mutation p.R17H 0.23 deleterious(0.02) benign(0.209) TCGA-GJ-A9DB-01 2 192820997 192820997 G A TMEFF2 Nonsense_Mutation p.Q285* 0.13 TCGA-GJ-A9DB-01 2 48602270 48602270 G C FOXN2 Missense_Mutation p.E328D 0.16 tolerated(0.39) benign(0.039) TCGA-GJ-A9DB-01 2 64208898 64208898 G T VPS54 Missense_Mutation p.S87Y 0.40 tolerated(0.13) benign(0.098) TCGA-GJ-A9DB-01 2 74689306 74689306 G A MOGS Missense_Mutation p.A537V 0.26 tolerated(0.36) benign(0.088) TCGA-GJ-A9DB-01 2 89544266 89544266 G T IGKV2-30 Missense_Mutation p.P120T 0.38 deleterious(0) probably_damaging(0.997) TCGA-GJ-A9DB-01 2 95539229 95539229 G T TEKT4 Intron 0.25 TCGA-GJ-A9DB-01 3 137893695 137893695 G A DBR1 5'UTR 0.06 TCGA-GJ-A9DB-01 3 164907221 164907221 G T SLITRK3 Missense_Mutation p.N466K 0.06 deleterious(0) probably_damaging(1) TCGA-GJ-A9DB-01 3 184071474 184071474 T A CLCN2 Missense_Mutation p.M611L 0.26 deleterious(0.03) benign(0.002) TCGA-GJ-A9DB-01 3 196242031 196242031 C T SMCO1 Missense_Mutation p.R17K 0.36 deleterious(0.04) benign(0.04) TCGA-GJ-A9DB-01 3 196674641 196674641 A C PIGZ Missense_Mutation p.M376R 0.31 deleterious(0) benign(0.143) TCGA-GJ-A9DB-01 3 40529349 40529349 C T ZNF619 Missense_Mutation p.H490Y 0.19 deleterious(0) probably_damaging(0.986) TCGA-GJ-A9DB-01 3 62358211 62358211 G A FEZF2 Silent p.G111G 0.05 TCGA-GJ-A9DB-01 3 9739394 9739394 G T MTMR14 Splice_Site p.X538_splice 0.54 TCGA-GJ-A9DB-01 4 103265762 103265762 C A SLC39A8 Nonsense_Mutation p.G20* 0.30 TCGA-GJ-A9DB-01 4 125592001 125592001 C T ANKRD50 Missense_Mutation p.D811N 0.37 deleterious(0.01) probably_damaging(1) TCGA-GJ-A9DB-01 4 128625405 128625405 G C INTU Missense_Mutation p.R509T 0.23 deleterious(0) probably_damaging(0.996) TCGA-GJ-A9DB-01 4 148787952 148787952 G A ARHGAP10 Silent p.Q229Q 0.16 TCGA-GJ-A9DB-01 4 174089948 174089948 G T GALNT7 5'UTR 0.36 TCGA-GJ-A9DB-01 4 189061021 189061021 G A TRIML1 Silent p.K103K 0.34 TCGA-GJ-A9DB-01 4 47887522 47887522 G T NFXL1 Missense_Mutation p.T606N 0.40 tolerated(0.27) benign(0.04) TCGA-GJ-A9DB-01 4 57312864 57312864 T G PAICS Missense_Mutation p.I80S 0.26 benign(0.39) TCGA-GJ-A9DB-01 4 74279271 74279271 G A ALB Silent p.L326L 0.24 TCGA-GJ-A9DB-01 5 127873412 127873412 C A FBN2 5'UTR 0.39 TCGA-GJ-A9DB-01 5 140250310 140250310 T G PCDHA11 Missense_Mutation p.V541G 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.562) TCGA-GJ-A9DB-01 5 145664265 145664265 T A RBM27 Silent p.T1023T 0.43 TCGA-GJ-A9DB-01 5 80388721 80388721 T - RASGRF2 Frame_Shift_Del p.F498Lfs*6 0.17 TCGA-GJ-A9DB-01 6 151687782 151687782 T C ZBTB2 Missense_Mutation p.H140R 0.30 tolerated(0.55) probably_damaging(0.95) TCGA-GJ-A9DB-01 6 17837188 17837188 T A KIF13A Missense_Mutation p.N359I 0.42 deleterious(0) probably_damaging(0.999) TCGA-GJ-A9DB-01 6 32610000 32610000 G A HLA-DQA1 Missense_Mutation p.G195S 0.48 deleterious(0.02) probably_damaging(1) TCGA-GJ-A9DB-01 6 41773613 41773613 G A USP49 Missense_Mutation p.S370F 0.04 deleterious(0) probably_damaging(0.999) TCGA-GJ-A9DB-01 6 41774615 41774615 C T USP49 Nonsense_Mutation p.W36* 0.33 TCGA-GJ-A9DB-01 6 43222834 43222834 C T TTBK1 Silent p.V208V 0.10 TCGA-GJ-A9DB-01 6 44272421 44272421 C T AARS2 Silent p.Q571Q 0.34 TCGA-GJ-A9DB-01 7 11416199 11416199 A T THSD7A Silent p.A1629A 0.32 TCGA-GJ-A9DB-01 7 128470904 128470904 C T FLNC Silent p.I71I 0.33 TCGA-GJ-A9DB-01 7 128520071 128520071 C T KCP RNA 0.30 TCGA-GJ-A9DB-01 7 142625840 142625840 G T TRPV5 Silent p.P236P 0.32 TCGA-GJ-A9DB-01 7 149462747 149462747 G A ZNF467 Missense_Mutation p.R282C 0.04 deleterious(0.02) probably_damaging(0.983) TCGA-GJ-A9DB-01 7 56127966 56127966 A G CCT6A Missense_Mutation p.E357G 0.41 deleterious(0) possibly_damaging(0.508) TCGA-GJ-A9DB-01 7 73097969 73097969 G C WBSCR22 Missense_Mutation p.G5A 0.06 tolerated(0.3) benign(0.358) TCGA-GJ-A9DB-01 7 98445808 98445808 G A TMEM130 Silent p.V393V 0.36 TCGA-GJ-A9DB-01 8 110431367 110431367 C T PKHD1L1 Missense_Mutation p.T801M 0.30 deleterious(0.01) possibly_damaging(0.466) TCGA-GJ-A9DB-01 8 114449126 114449126 G A CSMD3 5'UTR 0.46 TCGA-GJ-A9DB-01 8 116616728 116616728 T C TRPS1 Missense_Mutation p.R490G 0.29 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-GJ-A9DB-01 8 53074116 53074116 C T ST18 Silent p.V471V 0.35 TCGA-GJ-A9DB-01 8 68658576 68658576 T A CPA6 5'UTR 0.42 TCGA-GJ-A9DB-01 8 73848416 73848416 C A KCNB2 Missense_Mutation p.P276T 0.40 deleterious(0) probably_damaging(1) TCGA-GJ-A9DB-01 9 16436852 16436852 C T BNC2 Missense_Mutation p.G447E 0.55 tolerated(1) benign(0.326) TCGA-GJ-A9DB-01 9 21837985 21837985 G C MTAP Missense_Mutation p.E142D 0.49 tolerated(0.28) benign(0.006) TCGA-GJ-A9DB-01 9 35072447 35072447 G A VCP 5'UTR 0.41 TCGA-GJ-A9DB-01 9 8500869 8500869 T G PTPRD Missense_Mutation p.K671N 0.50 tolerated(0.2) benign(0.002) TCGA-GJ-A9DB-01 9 86894924 86894924 C T SLC28A3 Silent p.G598G 0.44 TCGA-GJ-A9DB-01 X 148664871 148664871 G A MAGEA9B 5'UTR 0.30 TCGA-GJ-A9DB-01 X 149013107 149013107 G A MAGEA8 Missense_Mutation p.E21K 0.07 tolerated(0.12) possibly_damaging(0.692) TCGA-HP-A5MZ-01 10 117486766 117486766 T C ATRNL1 Silent p.L1268L 0.25 TCGA-HP-A5MZ-01 10 124335946 124335946 G A DMBT1 Silent p.V105V 0.18 TCGA-HP-A5MZ-01 10 129183066 129183066 G A DOCK1 Missense_Mutation p.V1253M 0.06 tolerated(0.17) possibly_damaging(0.861) TCGA-HP-A5MZ-01 10 134015481 134015481 T G DPYSL4 Missense_Mutation p.V381G 0.08 deleterious(0.01) benign(0.161) TCGA-HP-A5MZ-01 11 125885319 125885319 G A CDON Missense_Mutation p.P339S 0.18 deleterious(0.01) possibly_damaging(0.764) TCGA-HP-A5MZ-01 11 3735109 3735109 G A NUP98 Missense_Mutation p.S839L 0.12 deleterious(0.02) benign(0.069) TCGA-HP-A5MZ-01 11 62286109 62286109 G - AHNAK Frame_Shift_Del p.S5261Lfs*6 0.14 TCGA-HP-A5MZ-01 11 75150967 75150967 G A GDPD5 Silent p.L505L 0.18 TCGA-HP-A5MZ-01 11 77774945 77774945 G A THRSP Silent p.K6K 0.14 TCGA-HP-A5MZ-01 11 77774946 77774946 C G THRSP Missense_Mutation p.R7G 0.13 tolerated(0.3) benign(0.41) TCGA-HP-A5MZ-01 12 112708155 112708155 G A HECTD4 Missense_Mutation p.T540I 0.04 benign(0.043) TCGA-HP-A5MZ-01 12 26816709 26816709 A C ITPR2 Missense_Mutation p.L541R 0.16 deleterious(0) probably_damaging(0.997) TCGA-HP-A5MZ-01 12 57037684 57037684 T C ATP5B Missense_Mutation p.I182V 0.18 tolerated_low_confidence(0.23) benign(0.001) TCGA-HP-A5MZ-01 12 72416191 72416191 A T TPH2 Missense_Mutation p.T361S 0.15 deleterious(0.04) benign(0.266) TCGA-HP-A5MZ-01 13 24861041 24861041 A G SPATA13 Missense_Mutation p.M874V 0.18 tolerated(0.13) benign(0.025) TCGA-HP-A5MZ-01 14 32257020 32257020 A G NUBPL Missense_Mutation p.D183G 0.18 deleterious(0) probably_damaging(0.994) TCGA-HP-A5MZ-01 14 57698355 57698355 T C EXOC5 Silent p.K339K 0.09 TCGA-HP-A5MZ-01 15 35044889 35044889 G A GJD2 Silent p.V252V 0.13 TCGA-HP-A5MZ-01 15 49054803 49054803 C T CEP152 Missense_Mutation p.A783T 0.10 tolerated(0.33) benign(0.053) TCGA-HP-A5MZ-01 17 39502874 39502874 C T KRT33A Missense_Mutation p.S308N 0.26 tolerated(0.05) possibly_damaging(0.827) TCGA-HP-A5MZ-01 17 39643887 39643887 G A KRT36 Nonsense_Mutation p.Q268* 0.13 TCGA-HP-A5MZ-01 18 44561792 44561792 G C TCEB3B 5'UTR 0.12 TCGA-HP-A5MZ-01 18 55226447 55226447 A T FECH Missense_Mutation p.L251Q 0.19 deleterious(0) probably_damaging(0.997) TCGA-HP-A5MZ-01 18 67995108 67995108 T G SOCS6 3'UTR 0.15 TCGA-HP-A5MZ-01 19 1271998 1271998 C - CIRBP Frame_Shift_Del p.Y151Tfs*38 0.17 TCGA-HP-A5MZ-01 19 18001723 18001723 G A SLC5A5 Silent p.P560P 0.27 TCGA-HP-A5MZ-01 19 36219035 36219035 G A KMT2B Missense_Mutation p.D1512N 0.14 probably_damaging(0.959) TCGA-HP-A5MZ-01 19 46857241 46857241 G C PPP5C Missense_Mutation p.E120Q 0.18 tolerated(0.3) benign(0.225) TCGA-HP-A5MZ-01 19 6495513 6495513 C T TUBB4A Missense_Mutation p.V333M 0.09 tolerated_low_confidence(0.09) benign(0.351) TCGA-HP-A5MZ-01 19 7964686 7964686 C T LRRC8E Missense_Mutation p.P427S 0.16 tolerated(1) possibly_damaging(0.902) TCGA-HP-A5MZ-01 1 208269429 208269429 C A PLXNA2 Missense_Mutation p.G643W 0.10 deleterious(0) possibly_damaging(0.855) TCGA-HP-A5MZ-01 1 226076566 226076566 G A LEFTY1 Silent p.R67R 0.48 TCGA-HP-A5MZ-01 1 229434759 229434759 G T RAB4A Nonsense_Mutation p.E161* 0.14 TCGA-HP-A5MZ-01 20 25655887 25655887 G C ZNF337 Missense_Mutation p.H679Q 0.23 deleterious(0) possibly_damaging(0.537) TCGA-HP-A5MZ-01 20 34797717 34797717 G T EPB41L1 Missense_Mutation p.R659L 0.25 tolerated(0.15) benign(0.017) TCGA-HP-A5MZ-01 20 61595009 61595009 G C SLC17A9 Missense_Mutation p.E267Q 0.13 tolerated(0.14) benign(0.004) TCGA-HP-A5MZ-01 21 35183471 35183471 G T ITSN1 Missense_Mutation p.V838L 0.19 tolerated(0.91) benign(0.005) TCGA-HP-A5MZ-01 2 190742031 190742031 A G PMS1 Missense_Mutation p.M890V 0.10 deleterious(0.05) benign(0.028) TCGA-HP-A5MZ-01 2 21259995 21259995 G A APOB Missense_Mutation p.P224S 0.11 benign(0.019) TCGA-HP-A5MZ-01 2 223920250 223920250 G A KCNE4 3'UTR 0.07 TCGA-HP-A5MZ-01 2 26852279 26852279 C T CIB4 Missense_Mutation p.R62Q 0.20 tolerated(0.07) benign(0.047) TCGA-HP-A5MZ-01 2 67631603 67631603 G C ETAA1 Missense_Mutation p.D597H 0.12 deleterious(0) possibly_damaging(0.807) TCGA-HP-A5MZ-01 3 120067725 120067725 G T LRRC58 Silent p.L122L 0.17 TCGA-HP-A5MZ-01 3 128991183 128991183 G T COPG1 Missense_Mutation p.A695S 0.15 tolerated(0.32) possibly_damaging(0.664) TCGA-HP-A5MZ-01 3 196612730 196612731 - T SENP5 Frame_Shift_Ins p.L227Ffs*8 0.11 TCGA-HP-A5MZ-01 3 49321560 49321560 G A USP4 Silent p.P800P 0.15 TCGA-HP-A5MZ-01 3 49849633 49849633 C A UBA7 Missense_Mutation p.G234V 0.17 tolerated(0.15) benign(0.322) TCGA-HP-A5MZ-01 3 57391435 57391435 T C DNAH12 Missense_Mutation p.H2155R 0.21 tolerated(0.18) benign(0.022) TCGA-HP-A5MZ-01 4 113569387 113569387 A G LARP7 Intron 0.19 TCGA-HP-A5MZ-01 4 147179851 147179851 C T SLC10A7 Missense_Mutation p.R329K 0.11 tolerated(0.15) benign(0.02) TCGA-HP-A5MZ-01 4 78641452 78641452 T A CNOT6L 3'UTR 0.16 TCGA-HP-A5MZ-01 5 131721132 131721132 C G SLC22A5 Missense_Mutation p.D255E 0.28 tolerated(0.18) benign(0.084) TCGA-HP-A5MZ-01 5 169509944 169509944 C A DOCK2 3'UTR 0.11 TCGA-HP-A5MZ-01 6 121563360 121563360 G A TBC1D32 Missense_Mutation p.A715V 0.13 deleterious(0.02) benign(0.341) TCGA-HP-A5MZ-01 6 30698721 30698721 G C FLOT1 Missense_Mutation p.L294V 0.09 tolerated(0.28) benign(0.291) TCGA-HP-A5MZ-01 6 31851702 31851702 C T EHMT2 Missense_Mutation p.V933M 0.12 tolerated(0.06) probably_damaging(0.998) TCGA-HP-A5MZ-01 6 43166474 43166474 C A CUL9 Silent p.P977P 0.14 TCGA-HP-A5MZ-01 6 76731919 76731919 G T IMPG1 Missense_Mutation p.L194I 0.19 tolerated(0.13) benign(0.092) TCGA-HP-A5MZ-01 6 87725469 87725469 C T HTR1E Silent p.A139A 0.03 TCGA-HP-A5MZ-01 7 154002597 154002597 G T DPP6 Intron 0.18 TCGA-HP-A5MZ-01 7 4277393 4277393 A G SDK1 Missense_Mutation p.K2036R 0.17 tolerated(0.2) benign(0.003) TCGA-HP-A5MZ-01 7 49951654 49951654 C T VWC2 Missense_Mutation p.A284V 0.15 tolerated(0.12) benign(0.025) TCGA-HP-A5MZ-01 7 73605525 73605525 C T EIF4H Intron 0.15 TCGA-HP-A5MZ-01 8 106814199 106814199 C T ZFPM2 Missense_Mutation p.T630I 0.13 tolerated(0.17) benign(0.006) TCGA-HP-A5MZ-01 9 101340352 101340352 G A GABBR2 Silent p.C108C 0.18 TCGA-HP-A5MZ-01 9 104193055 104193056 CA - ALDOB Splice_Site p.X38_splice 0.14 TCGA-HP-A5MZ-01 9 13126733 13126733 A G MPDZ Silent p.D1501D 0.18 TCGA-HP-A5N0-01 10 103909723 103909723 C T PPRC1 Silent p.S1644S 0.38 TCGA-HP-A5N0-01 10 135082352 135082352 G A ADAM8 Missense_Mutation p.P655S 0.36 tolerated(0.84) benign(0.177) TCGA-HP-A5N0-01 10 14890638 14890638 C T HSPA14 Silent p.I84I 0.24 TCGA-HP-A5N0-01 10 15326009 15326009 A G FAM171A1 Missense_Mutation p.S65P 0.35 deleterious(0.01) possibly_damaging(0.791) TCGA-HP-A5N0-01 10 24832874 24832874 G T KIAA1217 Nonsense_Mutation p.E1559* 0.33 TCGA-HP-A5N0-01 10 72357968 72357968 A G PRF1 Silent p.S503S 0.53 TCGA-HP-A5N0-01 10 73437280 73437280 C T CDH23 Missense_Mutation p.R120C 0.07 deleterious(0) possibly_damaging(0.885) TCGA-HP-A5N0-01 10 93558624 93558624 C T TNKS2 Silent p.S59S 0.42 TCGA-HP-A5N0-01 11 117056884 117056884 A G SIDT2 Missense_Mutation p.I303V 0.31 tolerated(0.52) benign(0.058) TCGA-HP-A5N0-01 11 117282631 117282631 G T CEP164 Missense_Mutation p.R1428S 0.29 deleterious(0) benign(0.108) TCGA-HP-A5N0-01 11 118362558 118362558 A - KMT2A Frame_Shift_Del p.E1642Sfs*6 0.11 TCGA-HP-A5N0-01 11 118627983 118627983 T A DDX6 Missense_Mutation p.Q336L 0.20 deleterious(0) probably_damaging(0.999) TCGA-HP-A5N0-01 11 1266763 1266763 T A MUC5B Missense_Mutation p.Y2885N 0.19 unknown(0) TCGA-HP-A5N0-01 11 22272304 22272304 C A ANO5 Missense_Mutation p.P344H 0.31 deleterious(0) probably_damaging(0.988) TCGA-HP-A5N0-01 11 3381520 3381527 CAGTATTA - ZNF195 Frame_Shift_Del p.S237Rfs*22 0.23 TCGA-HP-A5N0-01 11 5510297 5510297 A T OR52D1 Missense_Mutation p.M121L 0.27 deleterious(0.01) possibly_damaging(0.904) TCGA-HP-A5N0-01 11 66322635 66322635 C A CTD-3074O7.2 3'Flank 0.22 TCGA-HP-A5N0-01 11 74980004 74980004 C T ARRB1 Splice_Site p.X341_splice 0.28 TCGA-HP-A5N0-01 11 92918881 92918881 T C SLC36A4 Missense_Mutation p.Q52R 0.21 tolerated(0.89) benign(0.012) TCGA-HP-A5N0-01 12 10147806 10147806 C A CLEC1B Nonsense_Mutation p.G160* 0.31 TCGA-HP-A5N0-01 12 107395609 107395609 T C CRY1 Silent p.E176E 0.35 TCGA-HP-A5N0-01 12 118020092 118020092 T G KSR2 Intron 0.23 TCGA-HP-A5N0-01 12 52760929 52760929 C T KRT85 Silent p.V87V 0.20 TCGA-HP-A5N0-01 12 64174920 64174920 T A TMEM5 Missense_Mutation p.D97E 0.26 tolerated(0.58) benign(0.004) TCGA-HP-A5N0-01 12 85450892 85450892 C A LRRIQ1 Missense_Mutation p.P774Q 0.28 deleterious(0) probably_damaging(0.921) TCGA-HP-A5N0-01 13 47012005 47012005 A T PPP1R2P4 RNA 0.06 TCGA-HP-A5N0-01 14 21992350 21992350 T A SALL2 Silent p.G504G 0.31 TCGA-HP-A5N0-01 14 50655388 50655388 T A SOS2 Missense_Mutation p.I181L 0.24 tolerated(0.62) benign(0.012) TCGA-HP-A5N0-01 14 65260468 65260468 C G SPTB Missense_Mutation p.R638P 0.34 deleterious(0) benign(0.054) TCGA-HP-A5N0-01 14 91927921 91927921 A T SMEK1 Missense_Mutation p.L719Q 0.16 tolerated(0.19) benign(0.192) TCGA-HP-A5N0-01 15 24925808 24925808 A T NPAP1 3'UTR 0.30 TCGA-HP-A5N0-01 15 25924784 25924784 C A ATP10A Missense_Mutation p.V1402F 0.35 tolerated_low_confidence(0.09) benign(0.044) TCGA-HP-A5N0-01 15 25924785 25924785 A C ATP10A Silent p.A1401A 0.37 TCGA-HP-A5N0-01 15 32450652 32450652 G A CHRNA7 Missense_Mutation p.C242Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-HP-A5N0-01 15 81426689 81426689 G T C15orf26 Missense_Mutation p.G7C 0.17 tolerated(0.09) benign(0.089) TCGA-HP-A5N0-01 16 50750836 50750836 C T NOD2 Missense_Mutation p.H861Y 0.29 deleterious(0.04) benign(0.004) TCGA-HP-A5N0-01 16 53358851 53358851 T G CHD9 3'UTR 0.21 TCGA-HP-A5N0-01 16 88500768 88500768 C T ZNF469 Missense_Mutation p.A2269V 0.10 benign(0.001) TCGA-HP-A5N0-01 17 11593045 11593045 G A DNAH9 Silent p.L1302L 0.40 TCGA-HP-A5N0-01 17 11597228 11597228 T G DNAH9 Missense_Mutation p.L1553R 0.57 probably_damaging(0.981) TCGA-HP-A5N0-01 17 15619991 15619991 G T ZNF286A Missense_Mutation p.R318I 0.43 tolerated(0.19) possibly_damaging(0.804) TCGA-HP-A5N0-01 17 39197352 39197352 C T KRTAP1-1 Missense_Mutation p.G100S 0.25 tolerated(1) benign(0.004) TCGA-HP-A5N0-01 17 47246920 47246920 G T B4GALNT2 Missense_Mutation p.G511W 0.35 deleterious(0) probably_damaging(0.998) TCGA-HP-A5N0-01 17 57093047 57093047 C A TRIM37 Missense_Mutation p.D834Y 0.34 deleterious_low_confidence(0.03) possibly_damaging(0.653) TCGA-HP-A5N0-01 17 71468282 71468282 C T SDK2 Silent p.L100L 0.26 TCGA-HP-A5N0-01 17 78319696 78319696 A G RNF213 Missense_Mutation p.I2521V 0.26 possibly_damaging(0.817) TCGA-HP-A5N0-01 19 14043535 14043538 TGTT - PODNL1 Frame_Shift_Del p.N507Ffs*2 0.22 TCGA-HP-A5N0-01 19 14720955 14720955 C G CLEC17A Missense_Mutation p.L362V 0.33 tolerated(0.19) probably_damaging(0.994) TCGA-HP-A5N0-01 19 16918939 16918939 A G NWD1 Missense_Mutation p.S1427G 0.32 tolerated(0.35) benign(0.008) TCGA-HP-A5N0-01 19 38161062 38161062 G C ZNF781 5'UTR 0.24 TCGA-HP-A5N0-01 19 38986916 38986965 CACGAGACGGTCATGGAGGTCATGGTCAACGTCCTCGGGGGCGGCGAGTC - RYR1 Frame_Shift_Del p.H2204Qfs*32 0.28 TCGA-HP-A5N0-01 19 41892629 41892629 A G EXOSC5 Missense_Mutation p.L206P 0.18 deleterious(0.01) probably_damaging(0.968) TCGA-HP-A5N0-01 19 4219685 4219685 C T ANKRD24 Missense_Mutation p.A1034V 0.31 tolerated(0.06) benign(0.217) TCGA-HP-A5N0-01 19 42300619 42300619 C A CEACAM3 Missense_Mutation p.P4T 0.23 deleterious(0.01) possibly_damaging(0.867) TCGA-HP-A5N0-01 19 42827878 42827878 G C TMEM145 Silent p.T446T 0.14 TCGA-HP-A5N0-01 19 42858165 42858165 A - MEGF8 Frame_Shift_Del p.T1267Pfs*5 0.15 TCGA-HP-A5N0-01 19 43523032 43523032 C A PSG11 Missense_Mutation p.R200M 0.31 deleterious(0.02) probably_damaging(1) TCGA-HP-A5N0-01 19 49472819 49472819 G A GYS1 Missense_Mutation p.S647L 0.41 tolerated(0.09) benign(0.265) TCGA-HP-A5N0-01 19 51528911 51528911 C A KLK11 Missense_Mutation p.A25S 0.27 tolerated_low_confidence(0.1) benign(0.133) TCGA-HP-A5N0-01 19 54291196 54291196 A C MIR372 RNA 0.37 TCGA-HP-A5N0-01 19 54598520 54598530 CTGCGCCAGTC - OSCAR 3'UTR 0.16 TCGA-HP-A5N0-01 19 54850148 54850148 C A LILRA4 Missense_Mutation p.R20L 0.30 tolerated(0.61) benign(0.001) TCGA-HP-A5N0-01 19 549779 549779 C G GZMM Silent p.G254G 0.40 TCGA-HP-A5N0-01 19 5621381 5621381 A G SAFB2 Silent p.P71P 0.04 TCGA-HP-A5N0-01 19 56241199 56241199 G A NLRP9 Silent p.L664L 0.27 TCGA-HP-A5N0-01 19 56416366 56416366 C A NLRP13 Missense_Mutation p.G854C 0.26 deleterious(0.02) possibly_damaging(0.513) TCGA-HP-A5N0-01 1 10713785 10713785 G A CASZ1 Missense_Mutation p.P777S 0.24 tolerated_low_confidence(1) benign(0.002) TCGA-HP-A5N0-01 1 111147065 111147065 G A KCNA2 Missense_Mutation p.R114W 0.33 deleterious(0) probably_damaging(0.999) TCGA-HP-A5N0-01 1 156641173 156641173 T A NES Missense_Mutation p.E936V 0.05 deleterious(0) benign(0.215) TCGA-HP-A5N0-01 1 158154012 158154012 G C CD1D 3'UTR 0.54 TCGA-HP-A5N0-01 1 158576234 158576234 G T OR10Z1 Silent p.G2G 0.52 TCGA-HP-A5N0-01 1 160806007 160806007 A G CD244 Missense_Mutation p.I296T 0.47 deleterious(0.04) probably_damaging(0.965) TCGA-HP-A5N0-01 1 16351300 16351300 T G CLCNKA Missense_Mutation p.L91R 0.24 deleterious(0) probably_damaging(0.933) TCGA-HP-A5N0-01 1 165738099 165738099 C T TMCO1 Missense_Mutation p.G15S 0.28 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-HP-A5N0-01 1 167962525 167962525 T - DCAF6 Frame_Shift_Del p.N250Kfs*7 0.19 TCGA-HP-A5N0-01 1 171070949 171070949 T G FMO3 Intron 0.41 TCGA-HP-A5N0-01 1 175299224 175299224 T C TNR Missense_Mutation p.Y1260C 0.24 deleterious(0) probably_damaging(0.992) TCGA-HP-A5N0-01 1 184702094 184702094 G T EDEM3 Silent p.I163I 0.16 TCGA-HP-A5N0-01 1 190195248 190195248 T G BRINP3 Missense_Mutation p.T309P 0.50 tolerated(0.1) benign(0.188) TCGA-HP-A5N0-01 1 197111554 197111554 T C ASPM Missense_Mutation p.K610E 0.31 tolerated(0.12) benign(0.007) TCGA-HP-A5N0-01 1 200818517 200818517 G T CAMSAP2 Nonsense_Mutation p.E874* 0.23 TCGA-HP-A5N0-01 1 201915582 201915582 T G LMOD1 5'UTR 0.15 TCGA-HP-A5N0-01 1 20517817 20517817 A C UBXN10 Missense_Mutation p.T255P 0.25 deleterious(0) probably_damaging(0.968) TCGA-HP-A5N0-01 1 224371102 224371102 C T DEGS1 Missense_Mutation p.R22W 0.23 deleterious(0) probably_damaging(0.998) TCGA-HP-A5N0-01 1 231060591 231060591 T C TTC13 Missense_Mutation p.R573G 0.19 deleterious(0) probably_damaging(0.998) TCGA-HP-A5N0-01 1 248616862 248616862 C T OR2T2 Missense_Mutation p.A255V 0.23 deleterious(0.02) possibly_damaging(0.685) TCGA-HP-A5N0-01 1 26355761 26355761 T C EXTL1 Missense_Mutation p.F286S 0.34 deleterious(0.02) benign(0.328) TCGA-HP-A5N0-01 20 33345295 33345295 T A NCOA6 Missense_Mutation p.Q419L 0.21 benign(0.445) TCGA-HP-A5N0-01 20 61637464 61637464 G A BHLHE23 Silent p.D205D 0.40 TCGA-HP-A5N0-01 22 21150602 21150602 C T PI4KA Silent p.R703R 0.03 TCGA-HP-A5N0-01 22 32829728 32829728 C T BPIFC Missense_Mutation p.G319D 0.27 tolerated(0.08) probably_damaging(0.921) TCGA-HP-A5N0-01 22 36960750 36960750 T A CACNG2 Missense_Mutation p.Q207L 0.07 deleterious(0) benign(0.071) TCGA-HP-A5N0-01 22 36960792 36960792 A G CACNG2 Missense_Mutation p.V193A 0.08 tolerated(0.27) benign(0.03) TCGA-HP-A5N0-01 22 36983573 36983573 C A CACNG2 Missense_Mutation p.K78N 0.22 tolerated(0.31) benign(0.378) TCGA-HP-A5N0-01 22 36983574 36983574 T A CACNG2 Missense_Mutation p.K78M 0.22 tolerated(0.22) possibly_damaging(0.855) TCGA-HP-A5N0-01 22 38062685 38062685 T G PDXP 3'UTR 0.27 TCGA-HP-A5N0-01 22 38565475 38565475 C T PLA2G6 5'UTR 0.10 TCGA-HP-A5N0-01 2 148680560 148680560 A G ACVR2A Missense_Mutation p.M366V 0.39 deleterious(0) probably_damaging(0.995) TCGA-HP-A5N0-01 2 152528994 152528994 G T NEB Silent p.A1396A 0.44 TCGA-HP-A5N0-01 2 152977069 152977069 G T STAM2 3'UTR 0.71 TCGA-HP-A5N0-01 2 169826676 169826676 T C ABCB11 Missense_Mutation p.Q563R 0.24 deleterious(0) probably_damaging(1) TCGA-HP-A5N0-01 2 192700908 192700908 G T SDPR Missense_Mutation p.A340E 0.05 tolerated(0.19) possibly_damaging(0.529) TCGA-HP-A5N0-01 2 197189763 197189763 C A HECW2 Missense_Mutation p.G228W 0.33 deleterious(0) probably_damaging(1) TCGA-HP-A5N0-01 2 215274960 215274960 C A SPAG16 Missense_Mutation p.A606E 0.23 deleterious(0.01) possibly_damaging(0.585) TCGA-HP-A5N0-01 2 230914503 230914503 A C SLC16A14 Missense_Mutation p.L126R 0.18 deleterious(0.01) possibly_damaging(0.824) TCGA-HP-A5N0-01 2 238280705 238280705 C A COL6A3 Missense_Mutation p.V1319L 0.26 probably_damaging(0.991) TCGA-HP-A5N0-01 3 108133086 108133086 C G MYH15 Missense_Mutation p.D1400H 0.19 deleterious(0) possibly_damaging(0.784) TCGA-HP-A5N0-01 3 178928226 178928226 C T PIK3CA Missense_Mutation p.P471L 0.04 deleterious(0) probably_damaging(0.92) TCGA-HP-A5N0-01 3 47618646 47618646 T C CSPG5 Silent p.G290G 0.24 TCGA-HP-A5N0-01 3 52393979 52393979 G A DNAH1 Silent p.Q1485Q 0.39 TCGA-HP-A5N0-01 3 7494474 7494474 T C GRM7 Missense_Mutation p.I452T 0.34 deleterious(0) possibly_damaging(0.57) TCGA-HP-A5N0-01 4 119459039 119459039 T C CEP170P1 RNA 0.23 TCGA-HP-A5N0-01 4 128816239 128816239 G T PLK4 Missense_Mutation p.W898C 0.35 deleterious(0.02) benign(0.443) TCGA-HP-A5N0-01 4 141484571 141484571 C T UCP1 Missense_Mutation p.A143T 0.20 deleterious(0.01) possibly_damaging(0.806) TCGA-HP-A5N0-01 4 152571045 152571045 C G FAM160A1 Missense_Mutation p.Q618E 0.15 deleterious(0) probably_damaging(0.986) TCGA-HP-A5N0-01 4 155163818 155163818 A T DCHS2 Missense_Mutation p.S1895T 0.38 tolerated(0.11) benign(0.138) TCGA-HP-A5N0-01 4 160253698 160253698 T C RAPGEF2 Missense_Mutation p.S501P 0.25 deleterious(0.01) benign(0.414) TCGA-HP-A5N0-01 4 173942670 173942670 C G GALNTL6 Missense_Mutation p.P511R 0.39 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-HP-A5N0-01 4 25671316 25671316 T A SLC34A2 Missense_Mutation p.V228E 0.31 deleterious(0) probably_damaging(0.996) TCGA-HP-A5N0-01 4 3237426 3237426 G T HTT Silent p.L2902L 0.46 TCGA-HP-A5N0-01 4 4864431 4864431 G T MSX1 Missense_Mutation p.R158L 0.56 tolerated(0.05) benign(0.392) TCGA-HP-A5N0-01 4 68725292 68725292 A T TMPRSS11D Missense_Mutation p.V38D 0.08 deleterious(0) possibly_damaging(0.878) TCGA-HP-A5N0-01 5 110407124 110407124 G A TSLP 5'Flank 0.20 TCGA-HP-A5N0-01 5 133481778 133481778 C T TCF7 Intron 0.31 TCGA-HP-A5N0-01 5 140857854 140857854 G C PCDHGC3 Missense_Mutation p.R724T 0.10 deleterious(0.04) benign(0.253) TCGA-HP-A5N0-01 5 160113232 160113232 G A ATP10B Silent p.P108P 0.28 TCGA-HP-A5N0-01 5 161324184 161324184 C A GABRA1 Missense_Mutation p.T376N 0.05 tolerated(0.34) benign(0.291) TCGA-HP-A5N0-01 5 168233531 168233531 C A SLIT3 Silent p.T285T 0.23 TCGA-HP-A5N0-01 5 176936802 176936802 C T DOK3 Splice_Site p.X17_splice 0.23 TCGA-HP-A5N0-01 5 179047996 179047996 C A HNRNPH1 Missense_Mutation p.K98N 0.24 deleterious(0.04) probably_damaging(0.992) TCGA-HP-A5N0-01 5 179393926 179393926 C T RNF130 Missense_Mutation p.G344S 0.35 tolerated(1) benign(0.129) TCGA-HP-A5N0-01 5 180030101 180030101 A T FLT4 3'UTR 0.33 TCGA-HP-A5N0-01 5 33937074 33937074 G C RXFP3 Missense_Mutation p.E77Q 0.07 tolerated(0.27) benign(0.006) TCGA-HP-A5N0-01 5 36124328 36124328 G T LMBRD2 Missense_Mutation p.P263T 0.24 tolerated(0.07) possibly_damaging(0.801) TCGA-HP-A5N0-01 6 117589552 117589552 T C VGLL2 Missense_Mutation p.S97P 0.06 deleterious(0.01) possibly_damaging(0.88) TCGA-HP-A5N0-01 6 117638330 117638330 A G ROS1 Silent p.Y2037Y 0.06 TCGA-HP-A5N0-01 6 160494391 160494391 G A IGF2R Missense_Mutation p.V1613M 0.04 deleterious(0.01) probably_damaging(0.998) TCGA-HP-A5N0-01 6 167571101 167571101 G A GPR31 Silent p.F73F 0.27 TCGA-HP-A5N0-01 6 168443256 168443256 C G KIF25 Missense_Mutation p.T282S 0.56 tolerated(0.17) possibly_damaging(0.874) TCGA-HP-A5N0-01 6 29055091 29055091 T G OR2B3 5'Flank 0.20 TCGA-HP-A5N0-01 6 31785058 31785058 C T HSPA1A Missense_Mutation p.R509C 0.27 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-HP-A5N0-01 6 74183325 74183325 C T MTO1 Missense_Mutation p.P258L 0.08 tolerated(0.06) possibly_damaging(0.863) TCGA-HP-A5N0-01 6 74446154 74446154 C G CD109 Missense_Mutation p.L186V 0.51 tolerated(0.05) possibly_damaging(0.672) TCGA-HP-A5N0-01 6 83880166 83880166 T A PGM3 Missense_Mutation p.D494V 0.30 deleterious(0) probably_damaging(0.983) TCGA-HP-A5N0-01 6 96654149 96654149 G C FUT9 3'UTR 0.35 TCGA-HP-A5N0-01 7 102108549 102108549 T G LRWD1 Missense_Mutation p.L240R 0.24 tolerated(0.55) benign(0.352) TCGA-HP-A5N0-01 7 103179712 103179712 A G RELN Silent p.D2331D 0.33 TCGA-HP-A5N0-01 7 106508977 106508977 C T PIK3CG Missense_Mutation p.P324L 0.24 deleterious(0.02) possibly_damaging(0.613) TCGA-HP-A5N0-01 7 128482322 128482322 C T FLNC Missense_Mutation p.P720L 0.07 deleterious(0) possibly_damaging(0.471) TCGA-HP-A5N0-01 7 139026139 139026139 C T LUC7L2 Silent p.A3A 0.35 TCGA-HP-A5N0-01 7 143175239 143175239 C G TAS2R41 Missense_Mutation p.L92V 0.15 deleterious(0.01) probably_damaging(0.984) TCGA-HP-A5N0-01 7 143555983 143555983 G T FAM115A Silent p.I813I 0.30 TCGA-HP-A5N0-01 7 143826880 143826880 G T OR2A14 Missense_Mutation p.L225F 0.11 deleterious(0) possibly_damaging(0.795) TCGA-HP-A5N0-01 7 158851225 158851225 G A VIPR2 Silent p.Y134Y 0.31 TCGA-HP-A5N0-01 7 27186959 27186959 T A HOXA6 Missense_Mutation p.Y137F 0.31 tolerated(0.06) possibly_damaging(0.899) TCGA-HP-A5N0-01 7 93055779 93055779 G A CALCR Silent p.I472I 0.06 TCGA-HP-A5N0-01 7 97821009 97821009 G A LMTK2 Missense_Mutation p.R411Q 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-HP-A5N0-01 8 110539193 110539193 G T PKHD1L1 Missense_Mutation p.R4222I 0.12 deleterious_low_confidence(0.01) benign(0.203) TCGA-HP-A5N0-01 8 133734357 133734357 G T TMEM71 Silent p.T208T 0.17 TCGA-HP-A5N0-01 8 133734358 133734358 G T TMEM71 Missense_Mutation p.T208N 0.18 deleterious(0.01) possibly_damaging(0.668) TCGA-HP-A5N0-01 8 146107239 146107239 C T ZNF250 Silent p.E448E 0.31 TCGA-HP-A5N0-01 8 27645507 27645507 C G ESCO2 Missense_Mutation p.D373E 0.19 deleterious(0.05) benign(0.077) TCGA-HP-A5N0-01 8 40554844 40554844 G A ZMAT4 Missense_Mutation p.A90V 0.28 deleterious(0) probably_damaging(0.999) TCGA-HP-A5N0-01 8 42611206 42611206 G T CHRNA6 Missense_Mutation p.A379D 0.32 tolerated(0.45) benign(0.005) TCGA-HP-A5N0-01 8 72975703 72975703 C T TRPA1 Missense_Mutation p.R219K 0.32 tolerated(1) benign(0) TCGA-HP-A5N0-01 9 118950193 118950193 C G PAPPA Silent p.S392S 0.28 TCGA-HP-A5N0-01 9 132691907 132691907 A G FNBP1 Missense_Mutation p.L194P 0.24 deleterious(0) probably_damaging(0.997) TCGA-HP-A5N0-01 9 37746731 37746731 T G FRMPD1 Missense_Mutation p.L1568V 0.16 deleterious(0) probably_damaging(0.997) TCGA-HP-A5N0-01 9 77354337 77354337 T A TRPM6 Missense_Mutation p.K1839I 0.09 deleterious(0) probably_damaging(1) TCGA-HP-A5N0-01 9 86905113 86905113 A G SLC28A3 Missense_Mutation p.S369P 0.20 deleterious(0.01) possibly_damaging(0.908) TCGA-HP-A5N0-01 9 96213566 96213566 A G FAM120AOS Intron 0.33 TCGA-HP-A5N0-01 X 101095492 101095492 G A NXF5 Missense_Mutation p.S226L 0.03 tolerated(0.14) benign(0.014) TCGA-HP-A5N0-01 X 101970175 101970185 CCAGGCATGGG - GPRASP2 Frame_Shift_Del p.Q127Pfs*3 0.27 TCGA-HP-A5N0-01 X 11776338 11776338 G A MSL3 5'UTR 0.33 TCGA-HP-A5N0-01 X 129264035 129264035 G A AIFM1 Silent p.Y560Y 0.13 TCGA-HP-A5N0-01 X 133927919 133927919 G A FAM122B Missense_Mutation p.L35F 0.14 tolerated(0.72) benign(0.004) TCGA-HP-A5N0-01 X 138728988 138728988 C A MCF2 Missense_Mutation p.V34L 0.18 tolerated(0.21) benign(0.208) TCGA-HP-A5N0-01 X 23411941 23411941 C T PTCHD1 Missense_Mutation p.A769V 0.10 deleterious(0) probably_damaging(0.933) TCGA-HP-A5N0-01 X 24006091 24006091 A C KLHL15 Missense_Mutation p.C588G 0.33 deleterious(0) benign(0.345) TCGA-HP-A5N0-01 X 3238423 3238423 G C MXRA5 Missense_Mutation p.S1768C 0.30 deleterious(0.02) benign(0.293) TCGA-HP-A5N0-01 X 3261758 3261758 G T MXRA5 Silent p.V39V 0.35 TCGA-HP-A5N0-01 X 34149907 34149907 C A FAM47A Missense_Mutation p.W163C 0.07 tolerated(0.08) probably_damaging(0.993) TCGA-HP-A5N0-01 X 41555817 41555817 A T GPR34 Missense_Mutation p.I311F 0.32 deleterious(0) probably_damaging(0.917) TCGA-HP-A5N0-01 X 54011484 54011484 G A PHF8 Missense_Mutation p.P805L 0.33 tolerated(0.23) benign(0.002) TCGA-HP-A5N0-01 X 92965581 92965581 A G FAM133A 3'UTR 0.35 TCGA-HP-A5N0-01 X 9841727 9841727 G A SHROOM2 Silent p.K67K 0.30 TCGA-K7-A5RF-01 10 102988554 102988554 C A LBX1 Missense_Mutation p.G7C 0.11 deleterious_low_confidence(0.05) possibly_damaging(0.59) TCGA-K7-A5RF-01 10 105362908 105362908 G T SH3PXD2A Silent p.S661S 0.10 TCGA-K7-A5RF-01 10 34671814 34671814 G A PARD3 Silent p.P351P 0.07 TCGA-K7-A5RF-01 10 37506628 37506628 C T ANKRD30A Missense_Mutation p.T974I 0.07 deleterious(0.01) possibly_damaging(0.86) TCGA-K7-A5RF-01 10 55719518 55719518 G A PCDH15 Silent p.I1032I 0.10 TCGA-K7-A5RF-01 10 93749020 93749020 A G BTAF1 Missense_Mutation p.N846S 0.08 tolerated(1) benign(0.003) TCGA-K7-A5RF-01 11 1619335 1619335 C T KRTAP5-2 Missense_Mutation p.C49Y 0.09 unknown(0) TCGA-K7-A5RF-01 12 101520845 101520845 G A ANO4 Silent p.P920P 0.04 TCGA-K7-A5RF-01 12 31552686 31552686 C A DENND5B Silent p.L990L 0.05 TCGA-K7-A5RF-01 12 53004991 53004991 C A KRT73 Missense_Mutation p.K369N 0.09 deleterious(0) probably_damaging(0.978) TCGA-K7-A5RF-01 12 6975155 6975155 A T USP5 Missense_Mutation p.I831F 0.04 deleterious(0) probably_damaging(0.998) TCGA-K7-A5RF-01 13 52034979 52034979 G A RPS4XP16 RNA 0.08 TCGA-K7-A5RF-01 14 88904449 88904449 A G SPATA7 Missense_Mutation p.I495V 0.08 tolerated(0.41) benign(0.001) TCGA-K7-A5RF-01 14 95916270 95916270 C T SYNE3 Missense_Mutation p.E483K 0.07 deleterious(0.05) benign(0.334) TCGA-K7-A5RF-01 16 20817829 20817829 C G AC004381.6 5'UTR 0.11 TCGA-K7-A5RF-01 16 3021213 3021213 G T PAQR4 Missense_Mutation p.Q74H 0.05 tolerated(0.06) possibly_damaging(0.819) TCGA-K7-A5RF-01 16 30794703 30794703 T A ZNF629 Nonsense_Mutation p.K316* 0.06 TCGA-K7-A5RF-01 17 40937151 40937151 C A WNK4 Missense_Mutation p.P403T 0.05 deleterious(0) unknown(0) TCGA-K7-A5RF-01 17 49043608 49043608 C T SPAG9 3'UTR 0.06 TCGA-K7-A5RF-01 19 15220108 15220108 C A SYDE1 Silent p.I110I 0.04 TCGA-K7-A5RF-01 19 38796124 38796124 G C YIF1B Missense_Mutation p.I271M 0.09 deleterious(0) benign(0.411) TCGA-K7-A5RF-01 19 42486221 42486221 T A ATP1A3 Missense_Mutation p.K357M 0.06 deleterious(0) probably_damaging(0.998) TCGA-K7-A5RF-01 19 43968547 43968547 G A LYPD3 Silent p.N47N 0.10 TCGA-K7-A5RF-01 19 45208989 45208989 G A CEACAM16 Nonsense_Mutation p.W264* 0.03 TCGA-K7-A5RF-01 19 51129160 51129160 A G SYT3 Missense_Mutation p.F466L 0.07 tolerated(0.64) benign(0.014) TCGA-K7-A5RF-01 19 56499259 56499259 C G NLRP8 Missense_Mutation p.L1043V 0.05 deleterious_low_confidence(0) benign(0.364) TCGA-K7-A5RF-01 19 58863684 58863684 G A A1BG Missense_Mutation p.S193F 0.10 deleterious(0) probably_damaging(0.999) TCGA-K7-A5RF-01 1 10468143 10468143 C T PGD Silent p.T155T 0.07 TCGA-K7-A5RF-01 1 1269237 1269237 T A TAS1R3 Missense_Mutation p.L651H 0.06 deleterious(0) possibly_damaging(0.904) TCGA-K7-A5RF-01 1 160589594 160589594 G A SLAMF1 Missense_Mutation p.T279M 0.08 deleterious(0) probably_damaging(1) TCGA-K7-A5RF-01 1 190068069 190068069 G A BRINP3 Silent p.C460C 0.06 TCGA-K7-A5RF-01 1 19499468 19499468 C T UBR4 Silent p.E1137E 0.08 TCGA-K7-A5RF-01 1 203797536 203797536 T C ZC3H11A Missense_Mutation p.L95P 0.05 deleterious(0.02) benign(0.162) TCGA-K7-A5RF-01 1 206634640 206634640 G T SRGAP2 Missense_Mutation p.A945S 0.09 tolerated_low_confidence(0.11) benign(0.036) TCGA-K7-A5RF-01 1 22148238 22148238 C T LDLRAD2 Intron 0.13 TCGA-K7-A5RF-01 1 246811218 246811218 A G CNST Missense_Mutation p.D572G 0.06 tolerated(0.05) benign(0.333) TCGA-K7-A5RF-01 1 27949607 27949607 G T FGR Missense_Mutation p.T92N 0.05 tolerated(0.2) probably_damaging(1) TCGA-K7-A5RF-01 1 53279323 53279323 G A ZYG11B Missense_Mutation p.G604E 0.13 deleterious(0) possibly_damaging(0.675) TCGA-K7-A5RF-01 20 57415270 57415270 T C RP4-806M20.3 5'Flank 0.06 TCGA-K7-A5RF-01 21 44324091 44324091 A G NDUFV3 Silent p.Q323Q 0.05 TCGA-K7-A5RF-01 22 40216999 40216999 T C ENTHD1 Silent p.A277A 0.10 TCGA-K7-A5RF-01 2 1652500 1652500 T C PXDN Missense_Mutation p.T1018A 0.03 tolerated(1) benign(0.008) TCGA-K7-A5RF-01 2 20138103 20138103 A G WDR35 Silent p.D673D 0.07 TCGA-K7-A5RF-01 2 223791787 223791787 T G ACSL3 Missense_Mutation p.L449V 0.05 tolerated(0.06) probably_damaging(0.999) TCGA-K7-A5RF-01 2 96861116 96861116 C T STARD7 Silent p.R154R 0.08 TCGA-K7-A5RF-01 3 167240162 167240162 A G WDR49 Silent p.C553C 0.08 TCGA-K7-A5RF-01 3 183898651 183898651 G T AP2M1 Missense_Mutation p.Q148H 0.08 deleterious(0.02) possibly_damaging(0.457) TCGA-K7-A5RF-01 3 37988645 37988645 A C CTDSPL Silent p.P59P 0.06 TCGA-K7-A5RF-01 3 38797277 38797277 A G SCN10A Splice_Site p.X487_splice 0.03 TCGA-K7-A5RF-01 3 39184867 39184867 C G CSRNP1 Silent p.V483V 0.06 TCGA-K7-A5RF-01 3 42610528 42610528 A C SEC22C Missense_Mutation p.I4S 0.07 deleterious(0) probably_damaging(0.999) TCGA-K7-A5RF-01 3 50340541 50340541 G A HYAL1 5'UTR 0.13 TCGA-K7-A5RF-01 4 110615726 110615726 G C CASP6 Missense_Mutation p.D146E 0.05 deleterious(0.03) possibly_damaging(0.514) TCGA-K7-A5RF-01 4 134111385 134111385 C A PCDH10 3'UTR 0.03 TCGA-K7-A5RF-01 4 24802293 24802293 A C SOD3 3'UTR 0.33 TCGA-K7-A5RF-01 4 37447618 37447618 A T KIAA1239 Silent p.G1336G 0.05 TCGA-K7-A5RF-01 4 39448160 39448160 C T KLB Missense_Mutation p.S605L 0.06 tolerated(0.72) benign(0.014) TCGA-K7-A5RF-01 5 148407630 148407630 G T SH3TC2 Silent p.I555I 0.06 TCGA-K7-A5RF-01 5 179956354 179956354 A G CNOT6 Silent p.G26G 0.08 TCGA-K7-A5RF-01 5 180048894 180048894 G A FLT4 Silent p.D556D 0.08 TCGA-K7-A5RF-01 5 180582509 180582509 C T OR2V2 Silent p.A189A 0.08 TCGA-K7-A5RF-01 5 75893275 75893275 G T IQGAP2 Missense_Mutation p.V307L 0.07 tolerated(0.53) possibly_damaging(0.893) TCGA-K7-A5RF-01 5 80063794 80063794 C G MSH3 Missense_Mutation p.H647D 0.07 tolerated(0.07) benign(0.216) TCGA-K7-A5RF-01 5 86705132 86705132 T C CCNH Missense_Mutation p.M97V 0.05 deleterious(0) possibly_damaging(0.844) TCGA-K7-A5RF-01 6 145948714 145948714 G A EPM2A Silent p.C278C 0.06 TCGA-K7-A5RF-01 7 107115727 107115727 C A GPR22 Missense_Mutation p.P408T 0.06 tolerated(0.53) benign(0.099) TCGA-K7-A5RF-01 7 20201371 20201371 C T MACC1 Missense_Mutation p.E39K 0.12 tolerated(0.63) benign(0.069) TCGA-K7-A5RF-01 7 22767126 22767126 C T IL6 Missense_Mutation p.A28V 0.06 deleterious(0.01) benign(0.065) TCGA-K7-A5RF-01 7 2406209 2406209 A C EIF3B Missense_Mutation p.S447R 0.10 deleterious(0.02) probably_damaging(0.973) TCGA-K7-A5RF-01 7 29407578 29407578 C T CHN2 Missense_Mutation p.P40L 0.09 deleterious(0) benign(0.126) TCGA-K7-A5RF-01 7 50444279 50444279 C A IKZF1 Missense_Mutation p.A70D 0.09 tolerated(0.16) possibly_damaging(0.599) TCGA-K7-A5RF-01 7 94298198 94298198 T C PEG10 3'UTR 0.13 TCGA-K7-A5RF-01 7 99273802 99273802 T C CYP3A5 Missense_Mutation p.K34R 0.10 deleterious(0.02) benign(0.061) TCGA-K7-A5RF-01 8 144891130 144891130 C A SCRIB Missense_Mutation p.Q588H 0.05 possibly_damaging(0.739) TCGA-K7-A5RF-01 8 3072177 3072177 A G CSMD1 Missense_Mutation p.I1570T 0.06 possibly_damaging(0.713) TCGA-K7-A5RF-01 8 35608295 35608295 T C UNC5D Missense_Mutation p.Y711H 0.08 deleterious(0.01) benign(0.21) TCGA-K7-A5RF-01 8 93026974 93026974 G A RUNX1T1 Missense_Mutation p.P112S 0.06 deleterious(0.04) probably_damaging(0.947) TCGA-K7-A5RF-01 9 104303192 104303192 T C RNF20 Missense_Mutation p.I188T 0.04 deleterious(0.01) benign(0.001) TCGA-K7-A5RF-01 X 106845477 106845477 G A FRMPD3 Missense_Mutation p.G1436D 0.04 tolerated(0.09) benign(0.002) TCGA-K7-A5RF-01 X 125298989 125298989 G A DCAF12L2 Nonsense_Mutation p.R307* 0.15 TCGA-K7-A5RF-01 X 138878508 138878508 T A ATP11C Missense_Mutation p.D380V 0.19 deleterious(0) probably_damaging(1) TCGA-K7-A5RF-01 X 69479048 69479048 C A P2RY4 Missense_Mutation p.A143S 0.10 tolerated(1) benign(0.028) TCGA-K7-A5RF-01 Y 21901515 21901515 T C KDM5D Missense_Mutation p.K186E 0.04 deleterious(0.04) benign(0.015) TCGA-K7-A5RG-01 10 103370971 103370971 A G FBXW4 3'UTR 0.07 TCGA-K7-A5RG-01 10 17362818 17362818 G C ST8SIA6 3'UTR 0.13 TCGA-K7-A5RG-01 10 18689927 18689927 T A CACNB2 Intron 0.10 TCGA-K7-A5RG-01 10 27356183 27356183 T C ANKRD26 Silent p.K370K 0.12 TCGA-K7-A5RG-01 10 33217025 33217025 T G ITGB1 Missense_Mutation p.I182L 0.06 deleterious(0) benign(0.26) TCGA-K7-A5RG-01 10 55581783 55581783 A G PCDH15 Silent p.S1903S 0.11 TCGA-K7-A5RG-01 10 88452294 88452294 C A LDB3 Missense_Mutation p.Q356K 0.05 tolerated(0.08) benign(0.358) TCGA-K7-A5RG-01 11 118766506 118766506 T A BCL9L 3'UTR 0.17 TCGA-K7-A5RG-01 11 118766691 118766691 C A BCL9L 3'UTR 0.20 TCGA-K7-A5RG-01 11 44255728 44255728 A G EXT2 Missense_Mutation p.M657V 0.16 deleterious(0.02) possibly_damaging(0.88) TCGA-K7-A5RG-01 11 44289129 44289129 C T ALX4 Missense_Mutation p.R274H 0.15 deleterious(0) probably_damaging(0.98) TCGA-K7-A5RG-01 11 47282864 47282864 C T NR1H3 Missense_Mutation p.S191F 0.14 deleterious(0.01) benign(0.121) TCGA-K7-A5RG-01 11 58602018 58602018 A C GLYATL2 Missense_Mutation p.Y257D 0.19 deleterious(0.01) possibly_damaging(0.844) TCGA-K7-A5RG-01 11 61277785 61277785 T G LRRC10B 3'UTR 0.11 TCGA-K7-A5RG-01 11 61960969 61960969 T C SCGB1D1 3'UTR 0.14 TCGA-K7-A5RG-01 11 63365558 63365558 T C PLA2G16 Silent p.G31G 0.17 TCGA-K7-A5RG-01 11 6643111 6643111 G A DCHS1 Missense_Mutation p.P3266S 0.12 deleterious(0) probably_damaging(0.996) TCGA-K7-A5RG-01 11 73387857 73387857 T C RAB6A 3'UTR 0.12 TCGA-K7-A5RG-01 12 109283310 109283310 C A DAO Missense_Mutation p.F125L 0.09 deleterious(0) possibly_damaging(0.833) TCGA-K7-A5RG-01 12 113573290 113573290 A T RASAL1 5'UTR 0.16 TCGA-K7-A5RG-01 12 122396358 122396358 C A WDR66 Missense_Mutation p.N637K 0.12 tolerated(1) benign(0) TCGA-K7-A5RG-01 12 124402197 124402197 A G DNAH10 Missense_Mutation p.E3572G 0.16 probably_damaging(0.998) TCGA-K7-A5RG-01 12 133102386 133102386 A T FBRSL1 Missense_Mutation p.S186C 0.15 deleterious(0) probably_damaging(0.927) TCGA-K7-A5RG-01 12 49374980 49374980 T C WNT1 Missense_Mutation p.S224P 0.12 deleterious(0) probably_damaging(1) TCGA-K7-A5RG-01 12 55886941 55886941 A G OR6C68 Silent p.P260P 0.20 TCGA-K7-A5RG-01 12 55945800 55945800 G T OR6C4 Nonsense_Mutation p.E264* 0.07 TCGA-K7-A5RG-01 12 57929270 57929270 C A DCTN2 Missense_Mutation p.E92D 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-K7-A5RG-01 12 58121178 58121178 C G AGAP2-AS1 Missense_Mutation p.R135G 0.20 benign(0.433) TCGA-K7-A5RG-01 12 58141073 58141073 A G TSPAN31 Nonstop_Mutation p.*211Wext*6 0.10 TCGA-K7-A5RG-01 12 6981244 6981244 T C SPSB2 Intron 0.15 TCGA-K7-A5RG-01 12 75601331 75601331 C T KCNC2 Missense_Mutation p.E145K 0.04 deleterious(0.02) probably_damaging(0.969) TCGA-K7-A5RG-01 12 78452777 78452777 T C NAV3 Missense_Mutation p.Y840H 0.13 deleterious(0.01) benign(0.398) TCGA-K7-A5RG-01 12 93100546 93100546 A T C12orf74 Missense_Mutation p.T47S 0.12 deleterious(0.01) probably_damaging(0.929) TCGA-K7-A5RG-01 13 88328465 88328465 C A SLITRK5 Missense_Mutation p.D274E 0.15 deleterious(0) probably_damaging(0.991) TCGA-K7-A5RG-01 14 42356745 42356745 T C LRFN5 Missense_Mutation p.L306P 0.11 deleterious(0) probably_damaging(0.999) TCGA-K7-A5RG-01 14 75245225 75245225 A G YLPM1 Missense_Mutation p.K317E 0.19 unknown(0) TCGA-K7-A5RG-01 14 75567691 75567697 TCACCAT CAG NEK9 Splice_Site p.X667_splice 0.14 TCGA-K7-A5RG-01 14 90730490 90730490 G A PSMC1 Missense_Mutation p.D191N 0.12 deleterious(0.01) possibly_damaging(0.694) TCGA-K7-A5RG-01 15 40031879 40031879 T C FSIP1 Missense_Mutation p.K256R 0.18 deleterious(0.01) possibly_damaging(0.73) TCGA-K7-A5RG-01 15 57212181 57212181 A G TCF12 Missense_Mutation p.S24G 0.14 deleterious(0) probably_damaging(0.995) TCGA-K7-A5RG-01 15 85327447 85327447 G C ZNF592 Missense_Mutation p.S514T 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-K7-A5RG-01 16 1254427 1254427 C T CACNA1H Missense_Mutation p.T807M 0.19 deleterious(0) probably_damaging(0.998) TCGA-K7-A5RG-01 16 20981196 20981196 T C DNAH3 Silent p.P2792P 0.17 TCGA-K7-A5RG-01 16 30760208 30760208 A T PHKG2 Nonsense_Mutation p.K23* 0.15 TCGA-K7-A5RG-01 16 3298983 3298983 C T MEFV Missense_Mutation p.E428K 0.23 deleterious(0.04) benign(0.102) TCGA-K7-A5RG-01 16 56920369 56920369 C A SLC12A3 Silent p.I673I 0.13 TCGA-K7-A5RG-01 16 67655390 67655390 A G CTCF Missense_Mutation p.Q418R 0.14 deleterious(0) probably_damaging(0.999) TCGA-K7-A5RG-01 17 10227505 10227505 A T MYH13 Missense_Mutation p.V923D 0.04 deleterious(0) benign(0.424) TCGA-K7-A5RG-01 17 1480000 1480000 T A SLC43A2 Missense_Mutation p.Q480L 0.21 tolerated(0.07) benign(0.003) TCGA-K7-A5RG-01 17 46685442 46685442 C T HOXB7 Missense_Mutation p.R139Q 0.12 tolerated(0.07) possibly_damaging(0.577) TCGA-K7-A5RG-01 17 47119724 47119724 T C IGF2BP1 Silent p.D354D 0.19 TCGA-K7-A5RG-01 17 58303397 58303397 T C USP32 Intron 0.13 TCGA-K7-A5RG-01 17 6920313 6920313 A C C17orf49 Missense_Mutation p.K165T 0.13 tolerated(0.12) probably_damaging(0.999) TCGA-K7-A5RG-01 17 71334929 71334929 C T SDK2 Missense_Mutation p.D2106N 0.08 tolerated(0.12) possibly_damaging(0.747) TCGA-K7-A5RG-01 17 7576928 7576928 T C TP53 Splice_Site p.X307_splice 0.20 TCGA-K7-A5RG-01 17 78327673 78327673 G A RNF213 Intron 0.28 TCGA-K7-A5RG-01 18 51851176 51851176 T G STARD6 Silent p.I183I 0.08 TCGA-K7-A5RG-01 19 10602442 10602442 C A KEAP1 Missense_Mutation p.G379V 0.12 deleterious(0) probably_damaging(1) TCGA-K7-A5RG-01 19 14865791 14865791 A G EMR2 Missense_Mutation p.V522A 0.16 deleterious(0) probably_damaging(0.936) TCGA-K7-A5RG-01 19 18279669 18279669 G T PIK3R2 Nonsense_Mutation p.E648* 0.14 TCGA-K7-A5RG-01 19 31040266 31040266 G T ZNF536 Missense_Mutation p.G1247V 0.18 deleterious_low_confidence(0) benign(0.294) TCGA-K7-A5RG-01 19 36048727 36048727 T A ATP4A Missense_Mutation p.D508V 0.13 deleterious(0) benign(0.32) TCGA-K7-A5RG-01 19 36387302 36387302 C T NFKBID Missense_Mutation p.V133I 0.08 tolerated(0.17) probably_damaging(0.997) TCGA-K7-A5RG-01 19 37310227 37310227 C G ZNF790 Missense_Mutation p.C340S 0.19 deleterious(0) probably_damaging(1) TCGA-K7-A5RG-01 19 40520371 40520371 A T ZNF546 Silent p.S398S 0.14 TCGA-K7-A5RG-01 19 42125996 42125996 G C CEACAM4 Intron 0.22 TCGA-K7-A5RG-01 19 48229309 48229309 A T EHD2 Missense_Mutation p.E248V 0.16 deleterious(0) probably_damaging(0.913) TCGA-K7-A5RG-01 19 51832044 51832044 C T IGLON5 3'UTR 0.11 TCGA-K7-A5RG-01 19 54600387 54600387 A T OSCAR Silent p.P49P 0.17 TCGA-K7-A5RG-01 19 54725007 54725007 G T LILRB3 Missense_Mutation p.N301K 0.04 tolerated(0.08) probably_damaging(0.999) TCGA-K7-A5RG-01 19 7807945 7807945 G T CD209 Missense_Mutation p.P399T 0.17 tolerated_low_confidence(0.13) unknown(0) TCGA-K7-A5RG-01 19 9073366 9073366 G A MUC16 Missense_Mutation p.L4694F 0.19 unknown(0) TCGA-K7-A5RG-01 1 118067844 118067844 A G MAN1A2 3'UTR 0.12 TCGA-K7-A5RG-01 1 151345144 151345144 G A SELENBP1 5'UTR 0.14 TCGA-K7-A5RG-01 1 155057577 155057577 G A EFNA3 Missense_Mutation p.E47K 0.18 tolerated(0.1) probably_damaging(0.927) TCGA-K7-A5RG-01 1 156303388 156303388 C G CCT3 Missense_Mutation p.R85P 0.12 deleterious(0) probably_damaging(0.997) TCGA-K7-A5RG-01 1 173478714 173478714 A C SLC9C2 Missense_Mutation p.I1011S 0.15 tolerated(0.24) benign(0.004) TCGA-K7-A5RG-01 1 176853524 176853524 G T ASTN1 Silent p.L1059L 0.14 TCGA-K7-A5RG-01 1 186909157 186909157 G T PLA2G4A Missense_Mutation p.A322S 0.20 deleterious(0.03) benign(0.034) TCGA-K7-A5RG-01 1 201184848 201184848 G T IGFN1 Silent p.G3059G 0.17 TCGA-K7-A5RG-01 1 205065957 205065957 C T RBBP5 Missense_Mutation p.G417S 0.18 tolerated(0.06) benign(0.383) TCGA-K7-A5RG-01 1 210847644 210847644 A T HHAT Missense_Mutation p.T470S 0.18 deleterious(0.02) possibly_damaging(0.487) TCGA-K7-A5RG-01 1 22336295 22336295 T C CELA3A Missense_Mutation p.I247T 0.16 tolerated(0.34) benign(0.015) TCGA-K7-A5RG-01 1 22902826 22902826 C T EPHA8 Silent p.D92D 0.20 TCGA-K7-A5RG-01 1 22965803 22965803 A T C1QA Missense_Mutation p.Q214L 0.19 deleterious(0.05) benign(0.34) TCGA-K7-A5RG-01 1 240071769 240071769 A G CHRM3 Missense_Mutation p.N340D 0.14 tolerated(0.37) benign(0.005) TCGA-K7-A5RG-01 1 244217640 244217640 G T ZBTB18 Missense_Mutation p.E188D 0.17 tolerated(0.34) possibly_damaging(0.593) TCGA-K7-A5RG-01 1 59248012 59248012 G A JUN Missense_Mutation p.P244L 0.22 deleterious(0.01) probably_damaging(0.974) TCGA-K7-A5RG-01 1 5964775 5964775 C T NPHP4 Missense_Mutation p.R682Q 0.11 tolerated(0.11) probably_damaging(0.998) TCGA-K7-A5RG-01 1 94578571 94578571 T C ABCA4 Missense_Mutation p.I40V 0.14 tolerated(1) benign(0.009) TCGA-K7-A5RG-01 20 10644621 10644621 A G JAG1 Silent p.N143N 0.09 TCGA-K7-A5RG-01 20 40980734 40980734 G T PTPRT Silent p.T584T 0.07 TCGA-K7-A5RG-01 20 4706074 4706074 A G PRND 3'UTR 0.10 TCGA-K7-A5RG-01 20 55841132 55841132 G T BMP7 Missense_Mutation p.A16E 0.13 tolerated_low_confidence(0.1) benign(0.048) TCGA-K7-A5RG-01 20 56139664 56139664 C T PCK1 Missense_Mutation p.P438L 0.16 deleterious(0) probably_damaging(1) TCGA-K7-A5RG-01 22 30202864 30202865 GA - ASCC2 Frame_Shift_Del p.S313Pfs*28 0.11 TCGA-K7-A5RG-01 22 41652812 41652812 C T RANGAP1 Missense_Mutation p.R264Q 0.13 tolerated(0.28) benign(0.01) TCGA-K7-A5RG-01 2 118575029 118575029 A G DDX18 Missense_Mutation p.N32S 0.14 tolerated_low_confidence(0.47) benign(0) TCGA-K7-A5RG-01 2 231927267 231927267 C T PSMD1 Missense_Mutation p.A61V 0.11 deleterious(0) probably_damaging(0.986) TCGA-K7-A5RG-01 2 37474750 37474750 T C NDUFAF7 Missense_Mutation p.M363T 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-K7-A5RG-01 2 46986955 46986955 G A SOCS5 Missense_Mutation p.R429Q 0.12 deleterious(0.02) possibly_damaging(0.817) TCGA-K7-A5RG-01 2 68365900 68365900 G A WDR92 Missense_Mutation p.R203W 0.07 deleterious(0) probably_damaging(0.944) TCGA-K7-A5RG-01 2 9347355 9347355 A T ASAP2 Missense_Mutation p.E41V 0.17 deleterious(0) benign(0.016) TCGA-K7-A5RG-01 2 96992598 96992598 A G ITPRIPL1 Missense_Mutation p.T85A 0.15 tolerated(0.72) benign(0) TCGA-K7-A5RG-01 3 109028174 109028174 T C DPPA2 Missense_Mutation p.H62R 0.16 tolerated(0.29) benign(0) TCGA-K7-A5RG-01 3 121712594 121712594 T A ILDR1 Silent p.P334P 0.10 TCGA-K7-A5RG-01 3 129147317 129147317 A G EFCAB12 Silent p.Y5Y 0.14 TCGA-K7-A5RG-01 3 132297694 132297694 T C ACAD11 Missense_Mutation p.M574V 0.15 tolerated(0.11) benign(0.001) TCGA-K7-A5RG-01 3 137843669 137843669 G A A4GNT Missense_Mutation p.R154C 0.15 deleterious(0) probably_damaging(1) TCGA-K7-A5RG-01 3 141632520 141632520 C A ATP1B3 Missense_Mutation p.L125I 0.16 tolerated(0.4) possibly_damaging(0.869) TCGA-K7-A5RG-01 3 143292967 143292967 C T SLC9A9 Nonsense_Mutation p.W321* 0.15 TCGA-K7-A5RG-01 3 146318107 146318107 T A PLSCR5 Missense_Mutation p.S53C 0.19 deleterious(0.02) benign(0.012) TCGA-K7-A5RG-01 3 150460068 150460068 T C SIAH2 Missense_Mutation p.T279A 0.13 tolerated(0.06) benign(0.033) TCGA-K7-A5RG-01 3 15613198 15613198 T A HACL1 Nonsense_Mutation p.K358* 0.14 TCGA-K7-A5RG-01 3 157188168 157188168 A T VEPH1 Missense_Mutation p.F97I 0.15 deleterious(0.03) benign(0) TCGA-K7-A5RG-01 3 157188169 157188169 G T VEPH1 Silent p.P96P 0.14 TCGA-K7-A5RG-01 3 17349528 17349528 A G TBC1D5 Missense_Mutation p.V365A 0.20 deleterious(0) probably_damaging(0.973) TCGA-K7-A5RG-01 3 195452975 195452978 CCCA - MUC20 Frame_Shift_Del p.P501Lfs*9 0.13 TCGA-K7-A5RG-01 3 44492403 44492403 C T ZNF445 Missense_Mutation p.G217E 0.08 tolerated(0.32) probably_damaging(0.931) TCGA-K7-A5RG-01 3 56468548 56468548 A T ERC2 Missense_Mutation p.L163H 0.13 deleterious(0.03) probably_damaging(0.951) TCGA-K7-A5RG-01 4 100003145 100003146 - C ADH5 Frame_Shift_Ins p.V80Sfs*3 0.13 TCGA-K7-A5RG-01 4 156696144 156696144 A T GUCY1B3 Missense_Mutation p.E34D 0.15 tolerated(0.17) benign(0.029) TCGA-K7-A5RG-01 4 156726268 156726268 C A GUCY1B3 Missense_Mutation p.P575T 0.18 tolerated(0.13) benign(0.028) TCGA-K7-A5RG-01 4 168155168 168155168 T A SPOCK3 Nonsense_Mutation p.K53* 0.18 TCGA-K7-A5RG-01 4 26426076 26426076 G T RBPJ Missense_Mutation p.Q216H 0.09 deleterious(0.03) probably_damaging(0.958) TCGA-K7-A5RG-01 4 3179109 3179109 G T HTT Missense_Mutation p.Q1486H 0.16 probably_damaging(0.998) TCGA-K7-A5RG-01 4 57216008 57216008 T C AASDH Missense_Mutation p.T637A 0.15 tolerated(0.78) benign(0.003) TCGA-K7-A5RG-01 4 71346647 71346647 C T MUC7 Silent p.S62S 0.18 TCGA-K7-A5RG-01 4 96127921 96127921 A G UNC5C Missense_Mutation p.L587P 0.05 deleterious(0) probably_damaging(0.956) TCGA-K7-A5RG-01 5 140175547 140175547 A T PCDHA2 Missense_Mutation p.H333L 0.15 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-K7-A5RG-01 5 140603055 140603055 A G PCDHB14 5'Flank 0.15 TCGA-K7-A5RG-01 5 169309899 169309899 T C FAM196B Missense_Mutation p.N335S 0.14 tolerated(0.3) benign(0.002) TCGA-K7-A5RG-01 5 170738472 170738472 C T TLX3 Nonsense_Mutation p.Q249* 0.12 TCGA-K7-A5RG-01 5 175774612 175774612 A T KIAA1191 Silent p.T303T 0.14 TCGA-K7-A5RG-01 5 34823722 34823722 A C RAI14 Missense_Mutation p.K595T 0.21 deleterious(0) possibly_damaging(0.627) TCGA-K7-A5RG-01 5 481703 481703 G A SLC9A3 Silent p.I498I 0.10 TCGA-K7-A5RG-01 5 63256701 63256701 C T HTR1A Silent p.R282R 0.14 TCGA-K7-A5RG-01 5 78940987 78940987 C T PAPD4 Missense_Mutation p.P265S 0.13 deleterious(0) probably_damaging(1) TCGA-K7-A5RG-01 6 10728899 10728899 A G TMEM14C Missense_Mutation p.M76V 0.15 deleterious(0) possibly_damaging(0.616) TCGA-K7-A5RG-01 6 26216460 26216460 C A HIST1H2BG 3'UTR 0.16 TCGA-K7-A5RG-01 6 29713506 29713506 T A Y_RNA 5'Flank 0.18 TCGA-K7-A5RG-01 6 31726633 31726633 G A MSH5 Missense_Mutation p.S436N 0.14 tolerated(0.56) benign(0.053) TCGA-K7-A5RG-01 6 39607439 39607439 C T KIF6 Missense_Mutation p.D116N 0.12 deleterious(0) probably_damaging(1) TCGA-K7-A5RG-01 6 40360391 40360391 A G LRFN2 Missense_Mutation p.M554T 0.12 deleterious(0.01) possibly_damaging(0.782) TCGA-K7-A5RG-01 6 47251729 47251729 T A TNFRSF21 Missense_Mutation p.K396N 0.12 deleterious(0) probably_damaging(0.98) TCGA-K7-A5RG-01 6 4892439 4892439 C A CDYL Missense_Mutation p.Q173K 0.19 tolerated(0.22) benign(0.047) TCGA-K7-A5RG-01 6 57472389 57472389 T G PRIM2 3'UTR 0.06 TCGA-K7-A5RG-01 7 100192090 100192090 A G FBXO24 Missense_Mutation p.K331R 0.12 tolerated(0.08) benign(0.292) TCGA-K7-A5RG-01 7 103969504 103969504 A G LHFPL3 Missense_Mutation p.S93G 0.10 tolerated(0.22) benign(0.318) TCGA-K7-A5RG-01 7 131195912 131195912 T G PODXL Missense_Mutation p.K127N 0.16 deleterious(0.02) benign(0.037) TCGA-K7-A5RG-01 7 138564336 138564336 A G KIAA1549 Silent p.D1431D 0.17 TCGA-K7-A5RG-01 7 92731170 92731170 T C SAMD9 Missense_Mutation p.Q1414R 0.12 tolerated(0.92) benign(0.017) TCGA-K7-A5RG-01 7 99085123 99085123 A C ZNF789 3'UTR 0.11 TCGA-K7-A5RG-01 8 114389080 114389080 G A CSMD3 Intron 0.11 TCGA-K7-A5RG-01 8 144892681 144892681 G C SCRIB Missense_Mutation p.P500A 0.13 benign(0.234) TCGA-K7-A5RG-01 8 16961997 16961997 A G MICU3 Missense_Mutation p.Y361C 0.23 tolerated(0.08) possibly_damaging(0.865) TCGA-K7-A5RG-01 8 52339318 52339318 G C PXDNL Missense_Mutation p.A509G 0.17 tolerated(0.23) benign(0.045) TCGA-K7-A5RG-01 8 72234031 72234031 T C EYA1 Missense_Mutation p.Q119R 0.11 deleterious(0) probably_damaging(0.992) TCGA-K7-A5RG-01 8 95676928 95676928 C T ESRP1 Silent p.S216S 0.10 TCGA-K7-A5RG-01 9 128118132 128118132 G A GAPVD1 Missense_Mutation p.D1350N 0.15 deleterious(0) probably_damaging(0.988) TCGA-K7-A5RG-01 9 17789515 17789515 T A SH3GL2 Silent p.A197A 0.21 TCGA-K7-A5RG-01 9 19516054 19516054 T A SLC24A2 3'UTR 0.13 TCGA-K7-A5RG-01 9 71836182 71836182 G A TJP2 Missense_Mutation p.R272H 0.07 tolerated(0.05) benign(0.008) TCGA-K7-A5RG-01 9 95077366 95077366 G A NOL8 Missense_Mutation p.T514I 0.11 deleterious(0.05) benign(0.022) TCGA-K7-A5RG-01 X 104999216 104999216 A G IL1RAPL2 Missense_Mutation p.Q413R 0.23 tolerated(0.25) benign(0.334) TCGA-K7-A5RG-01 X 129629187 129629187 G A RP1-274L7.1 Intron 0.30 TCGA-K7-A5RG-01 X 135431901 135431901 T A GPR112 Silent p.S2012S 0.28 TCGA-K7-A5RG-01 X 29973747 29973747 C T IL1RAPL1 Missense_Mutation p.P634L 0.27 tolerated_low_confidence(0.08) benign(0.086) TCGA-K7-A5RG-01 X 63412208 63412208 T A AMER1 Missense_Mutation p.K320I 0.08 deleterious(0) probably_damaging(1) TCGA-K7-A6G5-01 10 113915495 113915495 T C GPAM Intron 0.25 TCGA-K7-A6G5-01 10 24508649 24508649 A G KIAA1217 Silent p.S55S 0.32 TCGA-K7-A6G5-01 10 6498670 6498670 G T PRKCQ Missense_Mutation p.T538N 0.22 deleterious(0) probably_damaging(0.99) TCGA-K7-A6G5-01 10 82036284 82036284 A C MAT1A Missense_Mutation p.S206A 0.47 deleterious(0) benign(0.276) TCGA-K7-A6G5-01 11 10824602 10824602 T C EIF4G2 Missense_Mutation p.N324S 0.27 tolerated(0.14) benign(0.006) TCGA-K7-A6G5-01 11 14535383 14535383 G C PSMA1 Missense_Mutation p.L138V 0.26 deleterious(0.01) possibly_damaging(0.602) TCGA-K7-A6G5-01 11 18499168 18499168 G T LDHAL6A Missense_Mutation p.G238C 0.21 deleterious(0) probably_damaging(0.909) TCGA-K7-A6G5-01 11 21592455 21592455 G T NELL1 Missense_Mutation p.W709L 0.16 deleterious(0) probably_damaging(1) TCGA-K7-A6G5-01 11 36596559 36596559 G T RAG1 Missense_Mutation p.A569S 0.29 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-K7-A6G5-01 11 5462429 5462429 T C OR51I1 Missense_Mutation p.I106V 0.28 deleterious(0.01) benign(0.065) TCGA-K7-A6G5-01 11 71711533 71711533 C T IL18BP Silent p.P55P 0.32 TCGA-K7-A6G5-01 11 73824849 73824849 C A C2CD3 Missense_Mutation p.A607S 0.09 deleterious(0) probably_damaging(0.978) TCGA-K7-A6G5-01 12 20766493 20766493 C A PDE3A Silent p.A376A 0.29 TCGA-K7-A6G5-01 12 52681386 52681386 C A KRT81 Missense_Mutation p.K340N 0.30 deleterious(0.01) probably_damaging(0.939) TCGA-K7-A6G5-01 12 53242690 53242690 G A KRT78 Nonsense_Mutation p.Q9* 0.47 TCGA-K7-A6G5-01 12 53777293 53777293 C A SP1 Missense_Mutation p.A521D 0.08 deleterious(0.01) possibly_damaging(0.908) TCGA-K7-A6G5-01 12 54910687 54910687 T C NCKAP1L Missense_Mutation p.F336L 0.23 tolerated(0.77) benign(0.001) TCGA-K7-A6G5-01 12 93181640 93181640 T C EEA1 Intron 0.37 TCGA-K7-A6G5-01 12 95228772 95228772 G T MIR492 3'Flank 0.38 TCGA-K7-A6G5-01 13 38162065 38162065 C T POSTN Missense_Mutation p.S167N 0.32 tolerated(0.17) benign(0.029) TCGA-K7-A6G5-01 14 55819453 55819453 A C FBXO34 3'UTR 0.26 TCGA-K7-A6G5-01 14 65415173 65415173 G A RAB15 3'UTR 0.25 TCGA-K7-A6G5-01 14 74428466 74428466 G T COQ6 Nonsense_Mutation p.E413* 0.32 TCGA-K7-A6G5-01 15 28419597 28419597 A C HERC2 Missense_Mutation p.V3334G 0.33 benign(0.283) TCGA-K7-A6G5-01 15 30926529 30926529 A G ARHGAP11B Missense_Mutation p.K152E 0.27 tolerated(0.06) benign(0.215) TCGA-K7-A6G5-01 15 44816346 44816346 T C CTDSPL2 Silent p.L459L 0.50 TCGA-K7-A6G5-01 15 62226473 62226473 A C VPS13C Missense_Mutation p.F1938C 0.04 deleterious(0) probably_damaging(0.926) TCGA-K7-A6G5-01 15 63031555 63031555 A G TLN2 Silent p.P1232P 0.19 TCGA-K7-A6G5-01 15 89169543 89169543 C T AEN Nonsense_Mutation p.R35* 0.18 TCGA-K7-A6G5-01 16 29891311 29891311 G A SEZ6L2 Missense_Mutation p.P483S 0.28 deleterious(0.01) benign(0.216) TCGA-K7-A6G5-01 16 81390417 81390417 C T GAN Silent p.L221L 0.31 TCGA-K7-A6G5-01 16 88494198 88494198 G T ZNF469 Missense_Mutation p.R107M 0.28 possibly_damaging(0.506) TCGA-K7-A6G5-01 17 19459199 19459199 A G SLC47A1 Missense_Mutation p.Y277C 0.29 deleterious(0) probably_damaging(0.997) TCGA-K7-A6G5-01 17 28506153 28506156 AAGG - NSRP1 Frame_Shift_Del p.K116Nfs*28 0.21 TCGA-K7-A6G5-01 17 30351740 30351740 G T LRRC37B Nonsense_Mutation p.G564* 0.30 TCGA-K7-A6G5-01 17 42964016 42964016 C T EFTUD2 Missense_Mutation p.E70K 0.24 tolerated(0.16) benign(0.11) TCGA-K7-A6G5-01 17 59947136 59947136 T C INTS2 Missense_Mutation p.I1006V 0.31 deleterious(0) probably_damaging(0.994) TCGA-K7-A6G5-01 18 12356735 12356735 T G AFG3L2 Silent p.G374G 0.21 TCGA-K7-A6G5-01 18 60241963 60241963 T G ZCCHC2 Silent p.P883P 0.23 TCGA-K7-A6G5-01 19 12757461 12757461 T C MAN2B1 Silent p.S1003S 0.22 TCGA-K7-A6G5-01 19 35524522 35524522 C T SCN1B Silent p.T109T 0.37 TCGA-K7-A6G5-01 19 38877684 38877684 A G GGN Missense_Mutation p.L73P 0.20 deleterious_low_confidence(0) unknown(0) TCGA-K7-A6G5-01 19 39262531 39262531 C A LGALS7 Missense_Mutation p.V79F 0.29 tolerated(0.17) benign(0.375) TCGA-K7-A6G5-01 19 42752480 42752480 T C ERF 3'UTR 0.27 TCGA-K7-A6G5-01 19 44515439 44515440 - A ZNF230 Frame_Shift_Ins p.P419Tfs*5 0.19 TCGA-K7-A6G5-01 19 51191257 51191258 - GG SHANK1 Frame_Shift_Ins p.Q744Pfs*7 0.24 TCGA-K7-A6G5-01 19 51630358 51630358 G A SIGLEC9 Missense_Mutation p.V274I 0.21 tolerated(0.07) unknown(0) TCGA-K7-A6G5-01 19 7960521 7960521 G A LRRC8E Silent p.T11T 0.36 TCGA-K7-A6G5-01 1 113666804 113666804 G T LRIG2 3'UTR 0.18 TCGA-K7-A6G5-01 1 151158055 151158055 C A VPS72 Silent p.P104P 0.26 TCGA-K7-A6G5-01 1 153004986 153004986 G A SPRR1B Silent p.E55E 0.12 TCGA-K7-A6G5-01 1 16464616 16464616 C T EPHA2 Nonsense_Mutation p.W348* 0.23 TCGA-K7-A6G5-01 1 17565194 17565194 C T PADI1 Silent p.A514A 0.29 TCGA-K7-A6G5-01 1 183101589 183101589 G A LAMC1 Silent p.T1207T 0.35 TCGA-K7-A6G5-01 1 33760792 33760792 C G ZNF362 Silent p.P344P 0.23 TCGA-K7-A6G5-01 1 36060160 36060160 C T TFAP2E Silent p.A404A 0.21 TCGA-K7-A6G5-01 20 20351329 20351329 G T INSM1 3'UTR 0.26 TCGA-K7-A6G5-01 20 23066708 23066708 G T CD93 Nonsense_Mutation p.S41* 0.33 TCGA-K7-A6G5-01 20 31672781 31672781 G A BPIFB4 Missense_Mutation p.R254H 0.37 deleterious(0.04) benign(0.093) TCGA-K7-A6G5-01 20 9449315 9449315 G T PLCB4 Nonsense_Mutation p.E1104* 0.36 TCGA-K7-A6G5-01 21 28296456 28296456 C T ADAMTS5 Silent p.Q903Q 0.33 TCGA-K7-A6G5-01 22 29664336 29664336 C G EWSR1 Missense_Mutation p.T4R 0.23 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-K7-A6G5-01 22 45960824 45960824 G T FBLN1 Intron 0.35 TCGA-K7-A6G5-01 22 46449729 46449729 G T C22orf26 Missense_Mutation p.P82Q 0.31 tolerated_low_confidence(0.44) benign(0.001) TCGA-K7-A6G5-01 2 1499804 1499804 C T TPO Missense_Mutation p.R684C 0.34 tolerated(0.05) benign(0.013) TCGA-K7-A6G5-01 2 166229735 166229735 G C SCN2A Missense_Mutation p.V1284L 0.23 deleterious(0) possibly_damaging(0.828) TCGA-K7-A6G5-01 2 170460700 170460700 G T PPIG Missense_Mutation p.G22V 0.38 deleterious(0) probably_damaging(1) TCGA-K7-A6G5-01 2 170668325 170668325 G A METTL5 3'UTR 0.23 TCGA-K7-A6G5-01 2 179439946 179439946 A C TTN Missense_Mutation p.I23638S 0.29 TCGA-K7-A6G5-01 2 185800549 185800549 T C ZNF804A Silent p.V142V 0.28 TCGA-K7-A6G5-01 2 189907465 189907465 G C COL5A2 Missense_Mutation p.P1169R 0.42 unknown(0) TCGA-K7-A6G5-01 2 25965885 25965885 C A ASXL2 Missense_Mutation p.M1107I 0.21 tolerated(0.1) benign(0.271) TCGA-K7-A6G5-01 2 69650764 69650764 C A NFU1 Missense_Mutation p.R84S 0.26 tolerated(0.16) benign(0.06) TCGA-K7-A6G5-01 2 72374800 72374800 C A CYP26B1 Missense_Mutation p.G55V 0.22 deleterious(0) probably_damaging(0.98) TCGA-K7-A6G5-01 3 100467366 100467366 T G TFG Silent p.G398G 0.27 TCGA-K7-A6G5-01 3 105586253 105586253 C - CBLB Splice_Site p.X56_splice 0.22 TCGA-K7-A6G5-01 3 137880610 137880610 C A DBR1 3'UTR 0.32 TCGA-K7-A6G5-01 3 181431520 181431520 T G SOX2 3'UTR 0.30 TCGA-K7-A6G5-01 3 41268766 41268766 A C CTNNB1 Missense_Mutation p.K335T 0.21 deleterious(0) probably_damaging(0.973) TCGA-K7-A6G5-01 3 42826810 42826810 T C HIGD1A Missense_Mutation p.M93V 0.20 tolerated(1) benign(0.005) TCGA-K7-A6G5-01 3 47162395 47162395 G A SETD2 Missense_Mutation p.P1244L 0.10 deleterious_low_confidence(0) benign(0.013) TCGA-K7-A6G5-01 4 100463066 100463066 G C C4orf17 Splice_Site p.X294_splice 0.05 TCGA-K7-A6G5-01 4 134071449 134071449 G A PCDH10 Missense_Mutation p.G52R 0.24 tolerated(1) benign(0.003) TCGA-K7-A6G5-01 4 148579096 148579097 - AGGCTTTTTAGTTGCA PRMT10 Nonsense_Mutation p.D393Cfs*3 0.10 TCGA-K7-A6G5-01 4 6863165 6863165 C T KIAA0232 Silent p.S352S 0.24 TCGA-K7-A6G5-01 4 74283386 74283387 TG - ALB Splice_Site p.X476_splice 0.26 TCGA-K7-A6G5-01 4 74285295 74285296 - C ALB Frame_Shift_Ins p.A576Rfs*11 0.20 TCGA-K7-A6G5-01 4 89028333 89028333 T A ABCG2 Intron 0.26 TCGA-K7-A6G5-01 4 96052422 96052422 A G BMPR1B Missense_Mutation p.T309A 0.25 deleterious(0) probably_damaging(0.998) TCGA-K7-A6G5-01 4 99850252 99850252 G A EIF4E Silent p.V4V 0.26 TCGA-K7-A6G5-01 5 123979216 123979216 G A ZNF608 Silent p.S1428S 0.25 TCGA-K7-A6G5-01 5 127522409 127522409 C T SLC12A2 3'UTR 0.16 TCGA-K7-A6G5-01 5 140214367 140228479 5:140214367-140228479 - PCDHA8 large deletion 0.23 TCGA-K7-A6G5-01 5 140227952 140227952 G T PCDHA9 5'UTR 0.15 TCGA-K7-A6G5-01 5 140242341 140242341 G T AC005609.1 3'UTR 0.29 TCGA-K7-A6G5-01 5 148725167 148725167 C G GRPEL2 Missense_Mutation p.A22G 0.20 tolerated(0.12) benign(0.028) TCGA-K7-A6G5-01 5 169694194 169694194 C A LCP2 Intron 0.27 TCGA-K7-A6G5-01 5 23526529 23526529 A G PRDM9 Silent p.P444P 0.28 TCGA-K7-A6G5-01 6 118887408 118887408 C A CEP85L Missense_Mutation p.V105L 0.27 deleterious(0) probably_damaging(0.974) TCGA-K7-A6G5-01 6 150240524 150240524 C T RAET1G Intron 0.11 TCGA-K7-A6G5-01 6 160237044 160237044 G T PNLDC1 Missense_Mutation p.A336S 0.29 tolerated(0.2) benign(0.058) TCGA-K7-A6G5-01 6 44147887 44147887 C A CAPN11 Missense_Mutation p.H543N 0.24 tolerated(0.16) probably_damaging(0.944) TCGA-K7-A6G5-01 6 45296216 45296216 C A RUNX2 5'UTR 0.33 TCGA-K7-A6G5-01 6 65149117 65149117 G T EYS Missense_Mutation p.Q1925K 0.18 tolerated(0.05) benign(0.025) TCGA-K7-A6G5-01 6 73843259 73843259 G A KCNQ5 Missense_Mutation p.E474K 0.27 deleterious(0.01) benign(0.163) TCGA-K7-A6G5-01 7 116960721 116960721 G A WNT2 Silent p.A70A 0.27 TCGA-K7-A6G5-01 7 123514877 123514877 G T HYAL4 Missense_Mutation p.W339C 0.08 tolerated(0.07) probably_damaging(1) TCGA-K7-A6G5-01 7 124465303 124465303 T C POT1 Intron 0.24 TCGA-K7-A6G5-01 7 82538190 82538190 T A PCLO Intron 0.19 TCGA-K7-A6G5-01 7 98257930 98257930 C T NPTX2 Missense_Mutation p.L429F 0.26 tolerated_low_confidence(0.37) benign(0.025) TCGA-K7-A6G5-01 8 144695934 144695934 G A TSTA3 Silent p.P239P 0.36 TCGA-K7-A6G5-01 9 107618094 107618094 A C ABCA1 Intron 0.23 TCGA-K7-A6G5-01 9 133942439 133942439 G A LAMC3 Missense_Mutation p.G814R 0.39 deleterious(0.05) possibly_damaging(0.665) TCGA-K7-A6G5-01 9 139405212 139405212 C T NOTCH1 Missense_Mutation p.C878Y 0.41 deleterious(0) probably_damaging(1) TCGA-K7-A6G5-01 9 33465828 33465828 C T NOL6 Missense_Mutation p.S811N 0.27 tolerated(0.13) benign(0.008) TCGA-K7-A6G5-01 9 79320343 79320343 C T PRUNE2 Missense_Mutation p.D2283N 0.17 deleterious(0.05) benign(0.022) TCGA-K7-A6G5-01 X 140335728 140335728 G T SPANXC Silent p.A72A 0.61 TCGA-K7-A6G5-01 X 140785700 140785700 G T SPANXD Silent p.A72A 0.13 TCGA-K7-A6G5-01 X 151821124 151821124 G C GABRQ Missense_Mutation p.A427P 0.52 deleterious(0) probably_damaging(1) TCGA-K7-A6G5-01 X 3248697 3248697 G A MXRA5 Silent p.L102L 0.52 TCGA-K7-A6G5-01 X 65253415 65253415 T C VSIG4 Missense_Mutation p.M105V 0.40 tolerated(0.13) possibly_damaging(0.542) TCGA-K7-AAU7-01 10 119044292 119044292 A C PDZD8 Missense_Mutation p.F651C 0.30 tolerated_low_confidence(0.18) benign(0.001) TCGA-K7-AAU7-01 10 5952981 5952981 C T FBXO18 Silent p.C418C 0.27 TCGA-K7-AAU7-01 10 72636985 72636985 G A SGPL1 Missense_Mutation p.D534N 0.35 deleterious(0) probably_damaging(1) TCGA-K7-AAU7-01 10 89621709 89621709 C T KLLN Silent p.%3D 0.28 TCGA-K7-AAU7-01 10 93579739 93579739 T C TNKS2 Missense_Mutation p.I226T 0.25 tolerated(0.24) benign(0.329) TCGA-K7-AAU7-01 10 97916822 97916822 A T ZNF518A RNA 0.26 TCGA-K7-AAU7-01 11 113775680 113775680 C T HTR3B Silent p.L9L 0.28 TCGA-K7-AAU7-01 11 118307250 118307250 G - KMT2A Frame_Shift_Del p.R8Pfs*20 0.16 TCGA-K7-AAU7-01 11 119290822 119290822 A G THY1 Silent p.C104C 0.16 TCGA-K7-AAU7-01 11 34135326 34135326 C - NAT10 Frame_Shift_Del p.L146* 0.21 TCGA-K7-AAU7-01 11 55579074 55579074 C A OR5L1 Silent p.G44G 0.22 TCGA-K7-AAU7-01 11 65314273 65314273 A C LTBP3 Missense_Mutation p.C742W 0.33 deleterious(0) possibly_damaging(0.907) TCGA-K7-AAU7-01 11 77780754 77780755 TT - NDUFC2 3'UTR 0.25 TCGA-K7-AAU7-01 11 88241726 88241726 C G GRM5 3'UTR 0.28 TCGA-K7-AAU7-01 12 110019312 110019312 G A MVK Missense_Mutation p.E162K 0.19 tolerated(0.25) benign(0.003) TCGA-K7-AAU7-01 12 124498294 124498294 A G ZNF664 3'UTR 0.11 TCGA-K7-AAU7-01 12 125834194 125834194 T C TMEM132B Silent p.I83I 0.23 TCGA-K7-AAU7-01 12 27521282 27521282 C G ARNTL2 Missense_Mutation p.S40C 0.83 deleterious(0.03) benign(0.02) TCGA-K7-AAU7-01 12 27648715 27648715 G C SMCO2 Missense_Mutation p.E254Q 0.84 tolerated(0.17) probably_damaging(0.969) TCGA-K7-AAU7-01 12 32138704 32138704 G A KIAA1551 Silent p.R1605R 0.75 TCGA-K7-AAU7-01 12 81503455 81503455 C T ACSS3 Missense_Mutation p.T143I 0.36 tolerated(0.21) benign(0.001) TCGA-K7-AAU7-01 12 85285776 85285776 C T SLC6A15 Missense_Mutation p.D42N 0.36 tolerated(0.48) benign(0.002) TCGA-K7-AAU7-01 13 112722447 112722447 G A SOX1 Missense_Mutation p.V159M 0.31 tolerated(0.12) benign(0.049) TCGA-K7-AAU7-01 13 39263249 39263257 GATTCAGAT - FREM2 In_Frame_Del p.D592_S594del 0.28 TCGA-K7-AAU7-01 14 66965214 66965214 G A LINC00238 RNA 0.21 TCGA-K7-AAU7-01 14 99641663 99641663 C A BCL11B Nonsense_Mutation p.E504* 0.24 TCGA-K7-AAU7-01 15 28538147 28538147 C A HERC2 Missense_Mutation p.G70V 0.08 benign(0.014) TCGA-K7-AAU7-01 15 91430578 91430578 C T FES Missense_Mutation p.H216Y 0.33 deleterious(0) benign(0.001) TCGA-K7-AAU7-01 16 16138351 16138351 C A ABCC1 Missense_Mutation p.P285Q 0.19 tolerated(0.59) benign(0.017) TCGA-K7-AAU7-01 16 2215890 2215890 A C TRAF7 Missense_Mutation p.E31A 0.21 deleterious_low_confidence(0) benign(0.366) TCGA-K7-AAU7-01 16 3613511 3613511 A T NLRC3 Missense_Mutation p.F523Y 0.24 deleterious(0) probably_damaging(0.92) TCGA-K7-AAU7-01 16 3641076 3641076 A C SLX4 Missense_Mutation p.Y855D 0.19 deleterious(0) probably_damaging(0.999) TCGA-K7-AAU7-01 16 49315146 49315146 C G CBLN1 Missense_Mutation p.M77I 0.20 tolerated(0.05) possibly_damaging(0.823) TCGA-K7-AAU7-01 16 68405459 68405459 G A SMPD3 Missense_Mutation p.S209F 0.32 deleterious(0) probably_damaging(0.999) TCGA-K7-AAU7-01 16 70293021 70293021 C T AARS Silent p.V618V 0.23 TCGA-K7-AAU7-01 16 81142838 81142838 C T RNU6-1191P 5'Flank 0.22 TCGA-K7-AAU7-01 16 81385202 81385202 A G GAN Missense_Mutation p.Y61C 0.20 deleterious(0) probably_damaging(0.973) TCGA-K7-AAU7-01 16 89628070 89628070 C T RPL13 Nonsense_Mutation p.Q111* 0.25 TCGA-K7-AAU7-01 16 90162267 90162267 A T TUBB8P7 RNA 0.21 TCGA-K7-AAU7-01 17 33802437 33802437 T C SLFN12L Silent p.G424G 0.25 TCGA-K7-AAU7-01 17 36482914 36482914 C T GPR179 Missense_Mutation p.E2180K 0.14 deleterious(0.01) benign(0.075) TCGA-K7-AAU7-01 17 48046769 48046769 A T DLX4 5'UTR 0.44 TCGA-K7-AAU7-01 17 7578463 7578463 C G TP53 Missense_Mutation p.R156P 0.35 tolerated(0.22) probably_damaging(0.994) TCGA-K7-AAU7-01 19 20844364 20844364 C A ZNF626 5'UTR 0.50 TCGA-K7-AAU7-01 19 23159372 23159372 T C ZNF728 Missense_Mutation p.Y256C 0.29 deleterious(0.02) probably_damaging(0.968) TCGA-K7-AAU7-01 19 36047937 36047937 C T ATP4A Missense_Mutation p.D583N 0.26 tolerated(0.25) benign(0.016) TCGA-K7-AAU7-01 19 42830284 42830284 G C MEGF8 5'UTR 0.20 TCGA-K7-AAU7-01 19 49244274 49244274 C T IZUMO1 Missense_Mutation p.R315Q 0.17 tolerated(0.32) possibly_damaging(0.62) TCGA-K7-AAU7-01 19 51830432 51830432 C A IGLON5 Missense_Mutation p.Q249K 0.11 deleterious(0.01) benign(0.217) TCGA-K7-AAU7-01 19 992023 992023 C G WDR18 Missense_Mutation p.L334V 0.29 tolerated(0.59) benign(0.009) TCGA-K7-AAU7-01 1 109734359 109734359 T C KIAA1324 Silent p.S519S 0.18 TCGA-K7-AAU7-01 1 161094254 161094254 C T NIT1 3'Flank 0.16 TCGA-K7-AAU7-01 1 175957534 175957534 T A RFWD2 Missense_Mutation p.Q621L 0.27 deleterious(0.03) possibly_damaging(0.574) TCGA-K7-AAU7-01 1 178885526 178885534 GCTTCTACG - RALGPS2 3'UTR 0.19 TCGA-K7-AAU7-01 1 201252737 201252737 G T PKP1 5'UTR 0.26 TCGA-K7-AAU7-01 1 20517668 20517668 C T UBXN10 Missense_Mutation p.S205L 0.33 deleterious(0) probably_damaging(1) TCGA-K7-AAU7-01 1 214557934 214557934 G A PTPN14 Missense_Mutation p.R422W 0.30 deleterious(0) probably_damaging(0.958) TCGA-K7-AAU7-01 1 26603246 26603246 T A CEP85 Missense_Mutation p.I708N 0.28 deleterious(0) probably_damaging(1) TCGA-K7-AAU7-01 20 18491492 18491492 C G SEC23B Missense_Mutation p.L5V 0.24 tolerated(0.27) benign(0.001) TCGA-K7-AAU7-01 20 4228649 4228649 T G ADRA1D Missense_Mutation p.H319P 0.22 tolerated(0.38) benign(0) TCGA-K7-AAU7-01 20 8769114 8769114 G A PLCB1 Missense_Mutation p.D1044N 0.28 deleterious(0.03) benign(0.196) TCGA-K7-AAU7-01 21 38081704 38081704 G A SIM2 Intron 0.30 TCGA-K7-AAU7-01 22 20786220 20786220 T C SCARF2 Missense_Mutation p.I77V 0.34 tolerated(0.26) benign(0.011) TCGA-K7-AAU7-01 22 46681166 46681166 A G TTC38 Missense_Mutation p.Y275C 0.36 deleterious(0.01) benign(0.088) TCGA-K7-AAU7-01 2 179571276 179571276 G A TTN Silent p.N9775N 0.19 TCGA-K7-AAU7-01 2 1895870 1895870 G A MYT1L Missense_Mutation p.T739M 0.31 deleterious(0) probably_damaging(0.996) TCGA-K7-AAU7-01 2 33518280 33518280 C T LTBP1 Missense_Mutation p.L1056F 0.27 tolerated(0.06) benign(0.178) TCGA-K7-AAU7-01 3 112564646 112564646 T C CD200R1L 5'UTR 0.19 TCGA-K7-AAU7-01 3 48699034 48699034 A G CELSR3 Missense_Mutation p.L345P 0.37 deleterious(0.01) probably_damaging(0.953) TCGA-K7-AAU7-01 4 122738783 122738786 TCTT - CCNA2 3'UTR 0.22 TCGA-K7-AAU7-01 4 187455203 187455203 T C MTNR1A Silent p.P231P 0.23 TCGA-K7-AAU7-01 4 52757946 52757946 T G DCUN1D4 Silent p.A145A 0.20 TCGA-K7-AAU7-01 4 74274379 74274380 - AGCA ALB Frame_Shift_Ins p.C114Sfs*9 0.22 TCGA-K7-AAU7-01 4 76481309 76481309 G C C4orf26 Missense_Mutation p.C6S 0.22 tolerated_low_confidence(0.32) benign(0) TCGA-K7-AAU7-01 4 84216608 84216608 G A HPSE Silent p.T507T 0.26 TCGA-K7-AAU7-01 5 140215179 140215179 A G PCDHA7 Missense_Mutation p.Y404C 0.20 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-K7-AAU7-01 5 140229434 140229434 G A PCDHA9 Missense_Mutation p.A452T 0.29 deleterious_low_confidence(0.01) benign(0.271) TCGA-K7-AAU7-01 5 140242408 140242408 C T AC005609.1 Missense_Mutation p.A190T 0.15 possibly_damaging(0.695) TCGA-K7-AAU7-01 5 176784918 176784918 T G RGS14 5'UTR 0.30 TCGA-K7-AAU7-01 5 35867558 35867558 C T IL7R Silent p.T124T 0.18 TCGA-K7-AAU7-01 5 59189173 59189173 C T PDE4D Missense_Mutation p.G93S 0.24 deleterious_low_confidence(0.04) benign(0) TCGA-K7-AAU7-01 6 112388221 112388221 T C WISP3 Intron 0.15 TCGA-K7-AAU7-01 6 151671011 151671011 C T AKAP12 Silent p.G495G 0.24 TCGA-K7-AAU7-01 6 155154681 155154681 A G SCAF8 3'UTR 0.21 TCGA-K7-AAU7-01 6 71212389 71212389 G A FAM135A Silent p.A308A 0.31 TCGA-K7-AAU7-01 6 86176881 86176881 G A NT5E Missense_Mutation p.G148E 0.25 tolerated(0.9) benign(0.008) TCGA-K7-AAU7-01 7 102985144 102985144 T C DNAJC2 5'UTR 0.25 TCGA-K7-AAU7-01 7 107217956 107217956 C G DUS4L Nonsense_Mutation p.S302* 0.25 TCGA-K7-AAU7-01 7 117431557 117431557 C A CTTNBP2 Missense_Mutation p.V565F 0.25 deleterious(0) possibly_damaging(0.594) TCGA-K7-AAU7-01 7 128034577 128034577 G A IMPDH1 Missense_Mutation p.P543S 0.33 deleterious(0.01) possibly_damaging(0.762) TCGA-K7-AAU7-01 7 142723576 142723576 G A OR9A2 Missense_Mutation p.T215I 0.15 tolerated(0.44) benign(0.05) TCGA-K7-AAU7-01 7 155559207 155559207 G T RBM33 Missense_Mutation p.R1078L 0.34 deleterious(0.04) unknown(0) TCGA-K7-AAU7-01 7 43484797 43484797 T C HECW1 Missense_Mutation p.S676P 0.35 deleterious_low_confidence(0.04) possibly_damaging(0.649) TCGA-K7-AAU7-01 7 44149650 44149650 A T AEBP1 Missense_Mutation p.E396V 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-K7-AAU7-01 8 10557811 10557811 C T C8orf74 Missense_Mutation p.R239C 0.46 tolerated(0.19) benign(0.001) TCGA-K7-AAU7-01 8 124238821 124238821 C - C8orf76 Frame_Shift_Del p.N290Tfs*2 0.36 TCGA-K7-AAU7-01 8 125568510 125568510 T C MTSS1 Missense_Mutation p.Q456R 0.16 tolerated(0.22) benign(0.002) TCGA-K7-AAU7-01 8 132052016 132052016 C T ADCY8 Silent p.L188L 0.12 TCGA-K7-AAU7-01 8 38793565 38793565 G C PLEKHA2 Silent p.S65S 0.21 TCGA-K7-AAU7-01 8 57358296 57358296 T A PENK Intron 0.59 TCGA-K7-AAU7-01 8 57358297 57358297 G A PENK Intron 0.59 TCGA-K7-AAU7-01 8 86193750 86193750 A T CA13 3'UTR 0.10 TCGA-K7-AAU7-01 9 114246490 114246490 G A KIAA0368 Missense_Mutation p.P111S 0.24 unknown(0) TCGA-K7-AAU7-01 9 125562763 125562763 A C OR1K1 Missense_Mutation p.Y121S 0.36 deleterious(0) possibly_damaging(0.713) TCGA-K7-AAU7-01 9 128074846 128074846 A G GAPVD1 Silent p.L519L 0.24 TCGA-K7-AAU7-01 9 35806115 35806115 G T NPR2 Missense_Mutation p.D753Y 0.30 deleterious(0) probably_damaging(0.971) TCGA-K7-AAU7-01 9 37440504 37440504 A C ZBTB5 3'UTR 0.28 TCGA-K7-AAU7-01 9 74485146 74485146 T C ABHD17B Missense_Mutation p.Y167C 0.26 deleterious(0.01) probably_damaging(0.967) TCGA-K7-AAU7-01 X 31341775 31341775 G A DMD Missense_Mutation p.T3055M 0.49 possibly_damaging(0.764) TCGA-KR-A7K0-01 10 104173644 104173644 T C PSD Missense_Mutation p.T479A 0.11 deleterious(0.05) benign(0.041) TCGA-KR-A7K0-01 10 115348856 115348856 A G HABP2 3'UTR 0.22 TCGA-KR-A7K0-01 10 51843835 51843835 C G FAM21A Missense_Mutation p.L178V 0.49 deleterious(0) probably_damaging(0.999) TCGA-KR-A7K0-01 11 111636082 111636082 T C PPP2R1B Silent p.L47L 0.18 TCGA-KR-A7K0-01 11 36597509 36597509 G A RAG1 Silent p.L885L 0.37 TCGA-KR-A7K0-01 11 40136207 40136207 T C LRRC4C Missense_Mutation p.I546V 0.26 tolerated(1) benign(0.007) TCGA-KR-A7K0-01 11 4703454 4703454 T G OR51E2 Missense_Mutation p.K163T 0.25 deleterious(0.03) benign(0.161) TCGA-KR-A7K0-01 11 61323666 61323666 G A SYT7 Silent p.R15R 0.22 TCGA-KR-A7K0-01 11 6265537 6265537 C T CNGA4 Silent p.P542P 0.33 TCGA-KR-A7K0-01 11 94823277 94823277 T G ENDOD1 Silent p.A62A 0.27 TCGA-KR-A7K0-01 12 110421410 110421410 T C GIT2 Intron 0.32 TCGA-KR-A7K0-01 12 112481516 112481516 G C NAA25 Silent p.S721S 0.33 TCGA-KR-A7K0-01 12 12483617 12483617 C A MANSC1 Nonsense_Mutation p.E214* 0.34 TCGA-KR-A7K0-01 12 130935855 130935855 G A RIMBP2 Missense_Mutation p.A113V 0.33 tolerated(1) benign(0.001) TCGA-KR-A7K0-01 12 133319812 133319812 T G ANKLE2 Silent p.V427V 0.21 TCGA-KR-A7K0-01 12 19285332 19285332 C T PLEKHA5 Missense_Mutation p.P59S 0.25 deleterious(0) probably_damaging(0.999) TCGA-KR-A7K0-01 12 40942416 40942416 C A MUC19 3'UTR 0.28 TCGA-KR-A7K0-01 12 52635403 52635403 G A KRT7 Missense_Mutation p.A281T 0.21 tolerated(0.24) benign(0.058) TCGA-KR-A7K0-01 12 71537963 71537963 T C TSPAN8 Missense_Mutation p.I31V 0.13 tolerated(0.1) possibly_damaging(0.836) TCGA-KR-A7K0-01 12 7244239 7244239 T C C1R Missense_Mutation p.R13G 0.35 tolerated(0.48) benign(0.002) TCGA-KR-A7K0-01 13 25842077 25842077 T C MTMR6 Missense_Mutation p.I48M 0.21 deleterious(0.03) possibly_damaging(0.886) TCGA-KR-A7K0-01 13 84455656 84455656 A G SLITRK1 5'UTR 0.23 TCGA-KR-A7K0-01 14 105518034 105518034 G A GPR132 Missense_Mutation p.A147V 0.28 deleterious(0.01) probably_damaging(0.964) TCGA-KR-A7K0-01 14 45373642 45373642 G C C14orf28 Missense_Mutation p.G220A 0.28 deleterious_low_confidence(0.04) benign(0.101) TCGA-KR-A7K0-01 14 50550627 50550627 T C C14orf183 Silent p.T239T 0.28 TCGA-KR-A7K0-01 14 66082780 66082780 G A FUT8 Silent p.Q96Q 0.32 TCGA-KR-A7K0-01 15 83932609 83932609 C G BNC1 Missense_Mutation p.G465A 0.29 tolerated(0.65) benign(0.004) TCGA-KR-A7K0-01 16 23392309 23392309 G T SCNN1B 3'UTR 0.43 TCGA-KR-A7K0-01 16 28995279 28995279 G A SPNS1 Splice_Site p.X498_splice 0.33 TCGA-KR-A7K0-01 16 66976600 66976600 G A CES2 Nonsense_Mutation p.W508* 0.24 TCGA-KR-A7K0-01 16 70415588 70415588 C T ST3GAL2 3'UTR 0.26 TCGA-KR-A7K0-01 16 70902688 70902688 C A HYDIN Missense_Mutation p.G3699C 0.35 probably_damaging(0.991) TCGA-KR-A7K0-01 16 84358060 84358060 T C WFDC1 Missense_Mutation p.Y200H 0.26 deleterious(0.05) benign(0.003) TCGA-KR-A7K0-01 16 88495698 88495698 C G ZNF469 Missense_Mutation p.S607C 0.32 probably_damaging(0.953) TCGA-KR-A7K0-01 16 8866725 8866725 A G ABAT Missense_Mutation p.N302S 0.22 deleterious(0.03) benign(0.199) TCGA-KR-A7K0-01 16 88802619 88802619 G T PIEZO1 Silent p.P498P 0.25 TCGA-KR-A7K0-01 16 88802620 88802620 G T PIEZO1 Missense_Mutation p.P498H 0.25 tolerated(0.54) possibly_damaging(0.784) TCGA-KR-A7K0-01 17 60637386 60637386 G A TLK2 Missense_Mutation p.D244N 0.27 tolerated(0.05) possibly_damaging(0.615) TCGA-KR-A7K0-01 17 61987600 61987600 G T CSHL1 Missense_Mutation p.N131K 0.12 tolerated(0.06) benign(0.055) TCGA-KR-A7K0-01 17 65116628 65116628 C A HELZ Missense_Mutation p.G1244V 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.632) TCGA-KR-A7K0-01 17 74625607 74625607 C A ST6GALNAC1 Missense_Mutation p.Q106H 0.28 benign(0.258) TCGA-KR-A7K0-01 17 7636408 7636408 C A DNAH2 Missense_Mutation p.Q135K 0.37 benign(0.179) TCGA-KR-A7K0-01 18 24035552 24035552 G A KCTD1 3'UTR 0.40 TCGA-KR-A7K0-01 18 3067314 3067314 C T MYOM1 Silent p.E1668E 0.22 TCGA-KR-A7K0-01 19 14271099 14271099 C T LPHN1 Missense_Mutation p.G547E 0.35 deleterious(0.02) probably_damaging(0.978) TCGA-KR-A7K0-01 19 16918475 16918475 C T NWD1 Missense_Mutation p.T1272M 0.25 deleterious(0.03) probably_damaging(0.921) TCGA-KR-A7K0-01 19 34791601 34791601 G T KIAA0355 Missense_Mutation p.D75Y 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-KR-A7K0-01 19 36431219 36431219 G A LRFN3 Missense_Mutation p.V298M 0.30 deleterious(0.01) probably_damaging(0.924) TCGA-KR-A7K0-01 19 3908298 3908298 G A ATCAY Missense_Mutation p.V193I 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-KR-A7K0-01 19 44648772 44648772 A C ZNF234 5'UTR 0.31 TCGA-KR-A7K0-01 19 45856053 45856053 A C ERCC2 Missense_Mutation p.V618G 0.30 deleterious(0) probably_damaging(0.969) TCGA-KR-A7K0-01 19 46915578 46915578 G A CCDC8 Missense_Mutation p.P164S 0.20 possibly_damaging(0.738) TCGA-KR-A7K0-01 19 51916963 51916963 C T SIGLEC10 Intron 0.25 TCGA-KR-A7K0-01 19 5587086 5587086 G A SAFB2 3'UTR 0.31 TCGA-KR-A7K0-01 19 56735000 56735000 C G ZSCAN5A Missense_Mutation p.Q196H 0.16 tolerated(0.06) probably_damaging(0.997) TCGA-KR-A7K0-01 19 9074794 9074794 G A MUC16 Missense_Mutation p.P4218S 0.24 unknown(0) TCGA-KR-A7K0-01 1 100214255 100214256 - A FRRS1 Frame_Shift_Ins p.P24Sfs*15 0.20 TCGA-KR-A7K0-01 1 116932324 116932324 G A ATP1A1 Missense_Mutation p.V340I 0.35 tolerated(0.06) possibly_damaging(0.895) TCGA-KR-A7K0-01 1 118169250 118169250 C T FAM46C 3'UTR 0.17 TCGA-KR-A7K0-01 1 155292686 155292686 C A RUSC1 Silent p.L374L 0.38 TCGA-KR-A7K0-01 1 155736387 155736387 G A GON4L Silent p.D959D 0.21 TCGA-KR-A7K0-01 1 158389726 158389726 G T OR10K2 Missense_Mutation p.L311M 0.03 tolerated(0.05) probably_damaging(0.996) TCGA-KR-A7K0-01 1 185985310 185985310 C A HMCN1 Nonsense_Mutation p.Y1710* 0.54 TCGA-KR-A7K0-01 1 196684870 196684870 A T CFH Missense_Mutation p.N556I 0.48 deleterious(0.02) possibly_damaging(0.56) TCGA-KR-A7K0-01 1 215932021 215932021 T A USH2A Missense_Mutation p.M3769L 0.14 benign(0) TCGA-KR-A7K0-01 1 22156478 22156478 C A HSPG2 Intron 0.27 TCGA-KR-A7K0-01 1 225446907 225446907 G T DNAH14 Missense_Mutation p.G2364V 0.20 probably_damaging(0.925) TCGA-KR-A7K0-01 1 228560355 228560355 C T OBSCN Silent p.A8249A 0.46 TCGA-KR-A7K0-01 1 39880755 39880755 T C KIAA0754 3'UTR 0.23 TCGA-KR-A7K0-01 1 40539787 40539787 A G PPT1 Silent p.H289H 0.21 TCGA-KR-A7K0-01 1 41457492 41457492 T C CTPS1 Missense_Mutation p.M232T 0.31 tolerated(0.22) benign(0.043) TCGA-KR-A7K0-01 20 21687274 21687274 C T PAX1 Missense_Mutation p.P162L 0.40 deleterious(0) probably_damaging(1) TCGA-KR-A7K0-01 22 41320402 41320416 TACCTCGGGATGGAT - XPNPEP3 In_Frame_Del p.Y425_D429del 0.27 TCGA-KR-A7K0-01 22 50688843 50688843 C T HDAC10 Intron 0.38 TCGA-KR-A7K0-01 2 167298065 167298065 G T SCN7A Silent p.L666L 0.33 TCGA-KR-A7K0-01 2 171853223 171853223 T C TLK1 Silent p.T688T 0.19 TCGA-KR-A7K0-01 2 179438088 179438088 A G TTN Silent p.Y24257Y 0.26 TCGA-KR-A7K0-01 2 201997722 201997722 A G CFLAR Intron 0.25 TCGA-KR-A7K0-01 2 210594614 210594614 C T MAP2 Silent p.F1732F 0.18 TCGA-KR-A7K0-01 2 21232581 21232585 TTATC - APOB Frame_Shift_Del p.I2386Rfs*4 0.31 TCGA-KR-A7K0-01 2 30480370 30480370 A G LBH Silent p.E67E 0.30 TCGA-KR-A7K0-01 2 69379340 69379340 T C ANTXR1 Missense_Mutation p.F331L 0.20 tolerated(1) benign(0.016) TCGA-KR-A7K0-01 2 7003632 7003632 C A CMPK2 Missense_Mutation p.K251N 0.28 tolerated(0.28) benign(0.02) TCGA-KR-A7K0-01 3 112358134 112358134 C T CCDC80 Missense_Mutation p.G207S 0.29 deleterious(0) probably_damaging(0.982) TCGA-KR-A7K0-01 3 32774933 32774933 A G CNOT10 Missense_Mutation p.K472E 0.29 tolerated(0.12) benign(0.19) TCGA-KR-A7K0-01 3 38017293 38017293 G T CTDSPL Missense_Mutation p.V205L 0.38 deleterious(0) probably_damaging(0.986) TCGA-KR-A7K0-01 3 41266112 41266112 T G CTNNB1 Missense_Mutation p.S37A 0.15 deleterious(0) possibly_damaging(0.844) TCGA-KR-A7K0-01 3 52864542 52864542 C A ITIH4 Intron 0.35 TCGA-KR-A7K0-01 3 56655760 56655760 T A CCDC66 3'UTR 0.24 TCGA-KR-A7K0-01 3 58383369 58383369 T G PXK Nonsense_Mutation p.L341* 0.29 TCGA-KR-A7K0-01 4 129792900 129792900 G C JADE1 Missense_Mutation p.G671A 0.34 tolerated(0.96) benign(0.003) TCGA-KR-A7K0-01 4 166000907 166000907 T A TMEM192 Missense_Mutation p.D240V 0.37 deleterious(0) probably_damaging(1) TCGA-KR-A7K0-01 4 5798959 5798959 G T EVC Silent p.L699L 0.33 TCGA-KR-A7K0-01 4 66467891 66467891 G T EPHA5 Silent p.I126I 0.30 TCGA-KR-A7K0-01 4 68693206 68693206 G T TMPRSS11D Missense_Mutation p.S242Y 0.34 deleterious(0.01) benign(0) TCGA-KR-A7K0-01 4 75675929 75675929 G T BTC Silent p.V94V 0.26 TCGA-KR-A7K0-01 4 86916438 86916438 T A ARHGAP24 Missense_Mutation p.L544H 0.04 tolerated(0.28) benign(0.443) TCGA-KR-A7K0-01 4 88048838 88048838 C T AFF1 Nonsense_Mutation p.Q983* 0.39 TCGA-KR-A7K0-01 4 88732574 88732609 GAAGAGGAAGGAAATGAAAACGAAGAAAGCGAAGCA - IBSP In_Frame_Del p.E157_E168del 0.21 TCGA-KR-A7K0-01 4 96761797 96761797 G A PDHA2 Missense_Mutation p.G166S 0.30 deleterious(0) probably_damaging(0.993) TCGA-KR-A7K0-01 5 100147642 100147642 G T ST8SIA4 Missense_Mutation p.P330H 0.25 possibly_damaging(0.816) TCGA-KR-A7K0-01 5 134194882 134194882 C T C5orf24 3'UTR 0.23 TCGA-KR-A7K0-01 5 146752851 146752851 T C STK32A Silent p.I299I 0.40 TCGA-KR-A7K0-01 5 15936739 15936739 G A FBXL7 Missense_Mutation p.R307H 0.13 deleterious(0) probably_damaging(0.998) TCGA-KR-A7K0-01 5 169186741 169186741 G T DOCK2 Silent p.L803L 0.29 TCGA-KR-A7K0-01 5 176732936 176732936 G A PRELID1 Missense_Mutation p.R128Q 0.22 tolerated(0.08) benign(0.043) TCGA-KR-A7K0-01 5 32089543 32089543 A T PDZD2 Missense_Mutation p.M1997L 0.27 tolerated(0.11) benign(0.001) TCGA-KR-A7K0-01 5 40762932 40762932 G T PRKAA1 Missense_Mutation p.T558K 0.21 deleterious(0) probably_damaging(0.999) TCGA-KR-A7K0-01 5 59940645 59940645 G T DEPDC1B Silent p.V212V 0.33 TCGA-KR-A7K0-01 6 168464373 168464373 G A FRMD1 Nonsense_Mutation p.Q238* 0.18 TCGA-KR-A7K0-01 6 30893707 30893707 C T VARS2 Silent p.Y1034Y 0.40 TCGA-KR-A7K0-01 6 32156140 32156140 G C PBX2 Missense_Mutation p.S146C 0.24 deleterious(0.04) probably_damaging(0.95) TCGA-KR-A7K0-01 6 35471363 35471363 G A TULP1 Silent p.N432N 0.14 TCGA-KR-A7K0-01 6 4032471 4032471 A G PRPF4B Silent p.K240K 0.28 TCGA-KR-A7K0-01 6 40360309 40360309 G A LRFN2 Silent p.G581G 0.35 TCGA-KR-A7K0-01 6 51523772 51523772 A G PKHD1 Missense_Mutation p.S3718P 0.16 tolerated(0.43) benign(0.003) TCGA-KR-A7K0-01 6 74227627 74227627 G A EEF1A1 Missense_Mutation p.T432I 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.58) TCGA-KR-A7K0-01 6 74227628 74227628 T A EEF1A1 Missense_Mutation p.T432S 0.33 deleterious_low_confidence(0) benign(0.007) TCGA-KR-A7K0-01 6 99283906 99283906 C - POU3F2 Frame_Shift_Del p.L387Sfs*12 0.18 TCGA-KR-A7K0-01 7 139138236 139138236 A G KLRG2 3'UTR 0.33 TCGA-KR-A7K0-01 7 48467381 48467381 C G ABCA13 Missense_Mutation p.Q4160E 0.34 benign(0.012) TCGA-KR-A7K0-01 7 6798742 6798742 G C RSPH10B2 Silent p.L94L 0.16 TCGA-KR-A7K0-01 7 73631176 73631176 T G LAT2 Missense_Mutation p.I39S 0.26 deleterious(0) probably_damaging(0.999) TCGA-KR-A7K0-01 7 88965181 88965181 C T ZNF804B Missense_Mutation p.P962L 0.33 tolerated(0.23) benign(0.111) TCGA-KR-A7K0-01 7 89982211 89982211 G A GTPBP10 Missense_Mutation p.G39S 0.28 deleterious(0) probably_damaging(1) TCGA-KR-A7K0-01 8 141370238 141370238 T C TRAPPC9 Missense_Mutation p.Y567C 0.11 tolerated(0.16) probably_damaging(0.984) TCGA-KR-A7K0-01 8 27382882 27382882 G T EPHX2 Silent p.A354A 0.33 TCGA-KR-A7K0-01 8 30694575 30694575 C A TEX15 Silent p.G2692G 0.32 TCGA-KR-A7K0-01 8 38965212 38965212 G A ADAM32 5'UTR 0.09 TCGA-KR-A7K0-01 8 56698309 56698309 T C TGS1 Silent p.G66G 0.27 TCGA-KR-A7K0-01 8 57358646 57358646 G T PENK 5'Flank 0.39 TCGA-KR-A7K0-01 8 57358647 57358647 G T PENK 5'Flank 0.40 TCGA-KR-A7K0-01 9 127631527 127631527 G T ARPC5L 5'UTR 0.26 TCGA-KR-A7K0-01 9 130489325 130489325 C T TTC16 Missense_Mutation p.A501V 0.37 deleterious(0.03) probably_damaging(0.977) TCGA-KR-A7K0-01 9 132632793 132632793 C T USP20 Missense_Mutation p.L543F 0.24 deleterious(0) probably_damaging(0.919) TCGA-KR-A7K0-01 9 20926369 20926369 G T FOCAD Missense_Mutation p.D1011Y 0.25 deleterious(0.01) probably_damaging(0.969) TCGA-KR-A7K0-01 9 6330311 6330311 T A TPD52L3 3'UTR 0.15 TCGA-KR-A7K0-01 9 91609095 91609095 G A C9orf47 3'UTR 0.30 TCGA-KR-A7K2-01 10 18289660 18289660 T C SLC39A12 Silent p.D555D 0.48 TCGA-KR-A7K2-01 10 35897239 35897239 G A GJD4 Silent p.P266P 0.18 TCGA-KR-A7K2-01 10 49447719 49447719 C A FRMPD2 Silent p.T239T 0.46 TCGA-KR-A7K2-01 11 89069106 89069106 A C NOX4 Missense_Mutation p.I508S 0.54 tolerated(0.23) benign(0.038) TCGA-KR-A7K2-01 11 93432956 93432959 AAAC - KIAA1731 Frame_Shift_Del p.Q1629Efs*3 0.23 TCGA-KR-A7K2-01 12 50190423 50190423 C T NCKAP5L Missense_Mutation p.S407N 0.22 deleterious(0) probably_damaging(0.987) TCGA-KR-A7K2-01 12 57923201 57923201 A C MBD6 3'UTR 0.67 TCGA-KR-A7K2-01 13 107187315 107187315 C T EFNB2 5'UTR 0.17 TCGA-KR-A7K2-01 14 53245074 53245074 A G GNPNAT1 Silent p.Y170Y 0.05 TCGA-KR-A7K2-01 15 43924421 43924421 G T CATSPER2 Missense_Mutation p.R513S 0.57 deleterious(0) probably_damaging(0.99) TCGA-KR-A7K2-01 16 16139804 16139804 C T ABCC1 Silent p.Y384Y 0.13 TCGA-KR-A7K2-01 16 46782159 46782159 C G MYLK3 5'UTR 0.44 TCGA-KR-A7K2-01 16 74708937 74708937 A C MLKL Silent p.G434G 0.41 TCGA-KR-A7K2-01 17 2290484 2290484 G T MNT Missense_Mutation p.P487H 0.35 deleterious(0) unknown(0) TCGA-KR-A7K2-01 17 39383271 39383271 A G KRTAP9-2 Missense_Mutation p.Y122C 0.54 tolerated(0.15) probably_damaging(0.986) TCGA-KR-A7K2-01 17 7145698 7145698 G A GABARAP 5'UTR 0.19 TCGA-KR-A7K2-01 17 72741729 72741729 C A RAB37 3'UTR 0.71 TCGA-KR-A7K2-01 17 73914085 73914085 G A FBF1 Silent p.R756R 0.31 TCGA-KR-A7K2-01 17 76887017 76887017 C A DDC8 Missense_Mutation p.M523I 0.54 tolerated(0.24) benign(0) TCGA-KR-A7K2-01 18 8143692 8143692 C T PTPRM Missense_Mutation p.H739Y 0.27 deleterious(0.01) probably_damaging(0.935) TCGA-KR-A7K2-01 19 12540714 12540714 C G ZNF443 3'UTR 0.25 TCGA-KR-A7K2-01 19 35449077 35449077 G A ZNF792 Missense_Mutation p.P561L 0.44 deleterious(0.02) possibly_damaging(0.732) TCGA-KR-A7K2-01 19 4653210 4653210 G A TNFAIP8L1 3'UTR 0.05 TCGA-KR-A7K2-01 19 6472968 6472968 C G DENND1C Missense_Mutation p.A364P 0.21 deleterious(0.04) possibly_damaging(0.864) TCGA-KR-A7K2-01 19 808555 808555 A G PTBP1 Missense_Mutation p.H419R 0.07 deleterious(0) probably_damaging(0.944) TCGA-KR-A7K2-01 1 109969034 109969034 C T PSMA5 5'Flank 0.12 TCGA-KR-A7K2-01 1 113212621 113212621 T G CAPZA1 Missense_Mutation p.I243S 0.50 deleterious(0) probably_damaging(0.992) TCGA-KR-A7K2-01 1 12023642 12023642 A C PLOD1 Missense_Mutation p.D384A 0.25 deleterious(0.03) benign(0.027) TCGA-KR-A7K2-01 1 180794056 180794056 T C XPR1 Silent p.L311L 0.14 TCGA-KR-A7K2-01 1 237670087 237670087 A G RYR2 Silent p.K897K 0.30 TCGA-KR-A7K2-01 1 36024726 36024726 A T NCDN Missense_Mutation p.M18L 0.49 deleterious_low_confidence(0) benign(0.067) TCGA-KR-A7K2-01 1 38423723 38423723 G T SF3A3 3'UTR 0.71 TCGA-KR-A7K2-01 1 89726418 89726419 AC - GBP5 Frame_Shift_Del p.V577* 0.23 TCGA-KR-A7K2-01 20 62659867 62659867 G A PRPF6 Silent p.L792L 0.34 TCGA-KR-A7K2-01 21 37736428 37736428 C A MORC3 Nonsense_Mutation p.S497* 0.40 TCGA-KR-A7K2-01 22 50968105 50968105 G A TYMP Missense_Mutation p.P12S 0.43 tolerated_low_confidence(0.06) possibly_damaging(0.803) TCGA-KR-A7K2-01 2 11738866 11738866 A G GREB1 Missense_Mutation p.Y738C 0.27 deleterious(0) possibly_damaging(0.819) TCGA-KR-A7K2-01 2 152659706 152659706 T C ARL5A 3'UTR 0.26 TCGA-KR-A7K2-01 2 168108386 168108386 G T XIRP2 Missense_Mutation p.G3495V 0.28 probably_damaging(1) TCGA-KR-A7K2-01 2 169847362 169847362 G A ABCB11 Missense_Mutation p.S286L 0.48 deleterious(0.01) benign(0.33) TCGA-KR-A7K2-01 2 21229489 21229489 G T APOB Silent p.T3417T 0.23 TCGA-KR-A7K2-01 2 219305556 219305556 C T VIL1 Missense_Mutation p.P781S 0.46 deleterious(0) benign(0.197) TCGA-KR-A7K2-01 2 228882606 228882606 G A SPHKAP Silent p.S988S 0.28 TCGA-KR-A7K2-01 2 239161897 239161897 C T PER2 Missense_Mutation p.A923T 0.09 tolerated(0.48) benign(0.099) TCGA-KR-A7K2-01 2 242758404 242758404 G T NEU4 3'UTR 0.26 TCGA-KR-A7K2-01 2 84518479 84518479 C T FUNDC2P2 RNA 0.67 TCGA-KR-A7K2-01 2 90139377 90139377 G A IGKV1D-16 Missense_Mutation p.G50S 0.25 tolerated(1) benign(0.002) TCGA-KR-A7K2-01 2 96259887 96259887 T A TRIM43 Missense_Mutation p.L39H 0.04 deleterious(0) probably_damaging(0.999) TCGA-KR-A7K2-01 2 99012595 99012595 A G CNGA3 Missense_Mutation p.Y321C 0.61 deleterious(0) probably_damaging(0.994) TCGA-KR-A7K2-01 2 9994549 9994563 CGGTAAGTCACAAGT - TAF1B Splice_Site p.X133_splice 0.16 TCGA-KR-A7K2-01 3 108117574 108117574 C T MYH15 Silent p.R1701R 0.33 TCGA-KR-A7K2-01 3 127831762 127831762 C T RUVBL1 Silent p.E110E 0.17 TCGA-KR-A7K2-01 3 141497429 141497429 C A GRK7 Silent p.T101T 0.29 TCGA-KR-A7K2-01 3 154055628 154055628 T C GPR149 Missense_Mutation p.N686D 0.53 deleterious(0) probably_damaging(0.939) TCGA-KR-A7K2-01 4 103518690 103518690 A G NFKB1 Silent p.L503L 0.33 TCGA-KR-A7K2-01 4 106603913 106603913 C A INTS12 Missense_Mutation p.A456S 0.54 deleterious_low_confidence(0) unknown(0) TCGA-KR-A7K2-01 4 39905761 39905761 T C PDS5A Silent p.K428K 0.58 TCGA-KR-A7K2-01 4 46066470 46066470 C G GABRG1 Missense_Mutation p.E205Q 0.28 tolerated(0.17) probably_damaging(0.963) TCGA-KR-A7K2-01 4 55946235 55946235 T C KDR Missense_Mutation p.D1315G 0.49 tolerated(0.4) possibly_damaging(0.753) TCGA-KR-A7K2-01 5 127744387 127744387 G A FBN2 Missense_Mutation p.T353I 0.39 tolerated(0.17) benign(0.258) TCGA-KR-A7K2-01 5 19747162 19747162 G T CDH18 Missense_Mutation p.P138T 0.51 deleterious(0.01) benign(0.217) TCGA-KR-A7K2-01 6 134495144 134495146 GGA - SGK1 In_Frame_Del p.P172del 0.14 TCGA-KR-A7K2-01 6 139134461 139134461 A T ECT2L Missense_Mutation p.K17M 0.16 deleterious(0.03) benign(0.263) TCGA-KR-A7K2-01 6 160114202 160114202 T A SOD2 5'UTR 0.25 TCGA-KR-A7K2-01 6 170102922 170102922 T A C6orf120 Missense_Mutation p.S123T 0.39 deleterious(0.03) probably_damaging(0.969) TCGA-KR-A7K2-01 6 32163286 32163286 T C NOTCH4 Silent p.S1980S 0.11 TCGA-KR-A7K2-01 6 7231437 7231437 C A RREB1 Silent p.L1035L 0.29 TCGA-KR-A7K2-01 7 114619638 114619638 G C MDFIC Missense_Mutation p.G208R 0.11 deleterious(0) probably_damaging(0.984) TCGA-KR-A7K2-01 7 44555486 44555486 A T NPC1L1 Missense_Mutation p.F1265I 0.71 deleterious(0) probably_damaging(0.998) TCGA-KR-A7K2-01 7 47849010 47849010 T G PKD1L1 Intron 0.14 TCGA-KR-A7K2-01 7 6797425 6797425 G A RSPH10B2 Silent p.E39E 0.12 TCGA-KR-A7K2-01 7 82451998 82451998 C A PCLO Missense_Mutation p.Q4868H 0.61 unknown(0) TCGA-KR-A7K2-01 8 100883103 100883103 T G VPS13B Missense_Mutation p.V3853G 0.21 deleterious(0) benign(0.307) TCGA-KR-A7K2-01 8 133734323 133734323 G C TMEM71 Missense_Mutation p.L220V 0.44 tolerated(0.1) possibly_damaging(0.671) TCGA-KR-A7K2-01 8 143763524 143763524 C T PSCA Silent p.L107L 0.21 TCGA-KR-A7K2-01 8 24157559 24157559 A G ADAM28 Missense_Mutation p.H40R 0.75 tolerated(0.25) benign(0.024) TCGA-KR-A7K2-01 8 61654307 61654307 C T CHD7 Missense_Mutation p.H106Y 0.25 benign(0.152) TCGA-KR-A7K2-01 8 95384388 95384389 - AATC RAD54B 3'UTR 0.11 TCGA-KR-A7K2-01 9 124065340 124065340 C G GSN Nonsense_Mutation p.Y167* 0.28 TCGA-KR-A7K2-01 X 100086583 100086583 A G CSTF2 Silent p.G323G 0.47 TCGA-KR-A7K2-01 X 134166686 134166686 C A FAM127A Silent p.L91L 0.38 TCGA-KR-A7K2-01 X 153060132 153060132 G C SSR4 5'UTR 0.83 TCGA-KR-A7K2-01 X 32486815 32486815 A G DMD Missense_Mutation p.S988P 0.82 probably_damaging(0.981) TCGA-KR-A7K7-01 10 106849559 106849559 C T SORCS3 Missense_Mutation p.A352V 0.35 tolerated(0.06) benign(0.261) TCGA-KR-A7K7-01 10 48389261 48389261 C T RBP3 Silent p.L539L 0.10 TCGA-KR-A7K7-01 10 79397093 79397093 A T KCNMA1 Missense_Mutation p.F103Y 0.36 deleterious(0) possibly_damaging(0.732) TCGA-KR-A7K7-01 11 2005719 2005719 G A MRPL23-AS1 RNA 0.09 TCGA-KR-A7K7-01 11 47510522 47510522 A T CELF1 Silent p.A42A 0.22 TCGA-KR-A7K7-01 11 4936112 4936112 A G OR51G2 Missense_Mutation p.I261T 0.20 deleterious(0) probably_damaging(0.999) TCGA-KR-A7K7-01 11 610529 610529 C T PHRF1 Missense_Mutation p.P1481L 0.50 tolerated(0.5) benign(0) TCGA-KR-A7K7-01 11 74716816 74716816 G A NEU3 Missense_Mutation p.C222Y 0.33 deleterious(0) possibly_damaging(0.73) TCGA-KR-A7K7-01 11 74717089 74717089 A G NEU3 Missense_Mutation p.Q313R 0.17 deleterious(0.03) probably_damaging(1) TCGA-KR-A7K7-01 12 107372216 107372216 C G MTERFD3 Missense_Mutation p.A93P 0.53 deleterious(0.03) possibly_damaging(0.584) TCGA-KR-A7K7-01 12 118199277 118199277 C T KSR2 Silent p.T175T 0.40 TCGA-KR-A7K7-01 12 56822710 56822710 T A TIMELESS Missense_Mutation p.M421L 0.42 tolerated(0.08) benign(0.028) TCGA-KR-A7K7-01 12 57432386 57432386 T A MYO1A Missense_Mutation p.N524Y 0.13 deleterious(0) probably_damaging(0.996) TCGA-KR-A7K7-01 12 57662147 57662147 G T R3HDM2 Missense_Mutation p.P643T 0.52 deleterious(0.04) benign(0.024) TCGA-KR-A7K7-01 13 39264296 39264296 G T FREM2 Nonsense_Mutation p.E939* 0.19 TCGA-KR-A7K7-01 13 67802586 67802586 T C PCDH9 5'UTR 0.42 TCGA-KR-A7K7-01 14 50089030 50089030 G A MGAT2 Nonsense_Mutation p.W348* 0.23 TCGA-KR-A7K7-01 15 91475134 91475134 G A HDDC3 Missense_Mutation p.T70I 0.38 deleterious(0) possibly_damaging(0.869) TCGA-KR-A7K7-01 16 10989531 10989531 G A CIITA Missense_Mutation p.D69N 0.05 deleterious(0.01) possibly_damaging(0.722) TCGA-KR-A7K7-01 16 461547 461547 C T DECR2 Missense_Mutation p.P283L 0.30 tolerated(0.5) benign(0) TCGA-KR-A7K7-01 16 55362664 55362664 C G IRX6 Missense_Mutation p.D258E 0.36 tolerated(0.14) probably_damaging(0.971) TCGA-KR-A7K7-01 16 88776364 88776364 C G CTU2 Missense_Mutation p.F54L 0.28 tolerated(0.06) benign(0.001) TCGA-KR-A7K7-01 17 17723609 17723613 TGGAG - SREBF1 Frame_Shift_Del p.T135Ifs*226 0.51 TCGA-KR-A7K7-01 17 1840387 1840387 C T RTN4RL1 Silent p.P243P 0.14 TCGA-KR-A7K7-01 17 28772780 28772780 G T CPD Missense_Mutation p.R872L 0.27 deleterious(0.01) possibly_damaging(0.549) TCGA-KR-A7K7-01 17 56400053 56400053 G A BZRAP1 Silent p.L427L 0.11 TCGA-KR-A7K7-01 17 6023676 6023676 G A WSCD1 Missense_Mutation p.V475I 0.52 deleterious(0.04) possibly_damaging(0.887) TCGA-KR-A7K7-01 17 60464748 60464748 A - EFCAB3 Frame_Shift_Del p.K94Rfs*3 0.33 TCGA-KR-A7K7-01 18 42643643 42643643 G C SETBP1 Missense_Mutation p.E1591Q 0.27 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-KR-A7K7-01 18 60036567 60036567 G A TNFRSF11A Missense_Mutation p.A473T 0.26 tolerated(0.72) benign(0.103) TCGA-KR-A7K7-01 18 77896211 77896211 C A ADNP2 Missense_Mutation p.S972Y 0.35 tolerated(0.59) possibly_damaging(0.632) TCGA-KR-A7K7-01 18 9208758 9208758 G C ANKRD12 Missense_Mutation p.Q136H 0.28 deleterious(0) probably_damaging(0.998) TCGA-KR-A7K7-01 19 10080566 10080566 T A COL5A3 Missense_Mutation p.R1323S 0.43 unknown(0) TCGA-KR-A7K7-01 19 10225190 10225190 G A PPAN-P2RY11 Missense_Mutation p.V721M 0.54 tolerated_low_confidence(0.22) benign(0.01) TCGA-KR-A7K7-01 19 12187711 12187711 A - ZNF844 Frame_Shift_Del p.K593Sfs*22 0.24 TCGA-KR-A7K7-01 19 37203683 37203683 G A ZNF567 Missense_Mutation p.G15E 0.56 deleterious(0) possibly_damaging(0.831) TCGA-KR-A7K7-01 19 42754547 42754547 G A ERF Missense_Mutation p.R65W 0.52 deleterious(0) probably_damaging(1) TCGA-KR-A7K7-01 19 43349191 43349191 T G PSG10P RNA 0.50 TCGA-KR-A7K7-01 19 52329228 52329228 T G FPR3 3'UTR 0.18 TCGA-KR-A7K7-01 19 57058902 57058902 C T ZFP28 Missense_Mutation p.A109V 0.18 tolerated(0.08) benign(0.269) TCGA-KR-A7K7-01 19 57086027 57086027 G T ZNF470 Missense_Mutation p.D70Y 0.54 tolerated(0.14) benign(0.424) TCGA-KR-A7K7-01 1 114483116 114483116 T A HIPK1 Missense_Mutation p.S37R 0.22 tolerated(0.66) benign(0.238) TCGA-KR-A7K7-01 1 11561875 11561875 G T PTCHD2 Nonsense_Mutation p.E276* 0.06 TCGA-KR-A7K7-01 1 14105088 14105088 G T PRDM2 Missense_Mutation p.L266F 0.06 benign(0.132) TCGA-KR-A7K7-01 1 146630962 146630962 G A PRKAB2 3'UTR 0.53 TCGA-KR-A7K7-01 1 156571271 156571271 T C GPATCH4 5'Flank 0.17 TCGA-KR-A7K7-01 1 159410510 159410510 G A OR10J1 Silent p.%3D 0.61 TCGA-KR-A7K7-01 1 16748584 16748584 G T SPATA21 Intron 0.23 TCGA-KR-A7K7-01 1 24969795 24969795 C T SRRM1 5'UTR 0.18 TCGA-KR-A7K7-01 1 26496448 26496448 C T ZNF593 5'UTR 0.33 TCGA-KR-A7K7-01 1 36638161 36638161 G A MAP7D1 Missense_Mutation p.R186H 0.08 probably_damaging(0.999) TCGA-KR-A7K7-01 20 3845079 3845079 G T MAVS Nonsense_Mutation p.E268* 0.37 TCGA-KR-A7K7-01 20 44695721 44695721 G - NCOA5 Frame_Shift_Del p.S201Lfs*2 0.30 TCGA-KR-A7K7-01 20 45354604 45354604 C G SLC2A10 Missense_Mutation p.S310C 0.41 tolerated(0.08) benign(0.351) TCGA-KR-A7K7-01 20 60869058 60869058 G A OSBPL2 3'UTR 0.40 TCGA-KR-A7K7-01 22 31331116 31331116 C T MORC2 Silent p.S553S 0.05 TCGA-KR-A7K7-01 2 101635522 101635522 A T RPL31 3'UTR 0.46 TCGA-KR-A7K7-01 2 167273323 167273323 T G SCN7A Missense_Mutation p.N1103T 0.41 deleterious(0.01) possibly_damaging(0.901) TCGA-KR-A7K7-01 2 175200837 175200837 A T AC018470.1 Missense_Mutation p.F439I 0.50 deleterious_low_confidence(0) unknown(0) TCGA-KR-A7K7-01 2 230668295 230668295 C T TRIP12 Missense_Mutation p.R922K 0.42 tolerated(0.07) possibly_damaging(0.766) TCGA-KR-A7K7-01 2 73195621 73195621 C T SFXN5 Missense_Mutation p.M261I 0.27 tolerated(0.48) benign(0.013) TCGA-KR-A7K7-01 2 88383836 88383836 C T SMYD1 Missense_Mutation p.L47F 0.46 tolerated(0.41) benign(0.245) TCGA-KR-A7K7-01 3 114070355 114070355 C T ZBTB20 Silent p.T190T 0.16 TCGA-KR-A7K7-01 3 124731574 124731574 G A HEG1 Missense_Mutation p.P950L 0.32 deleterious(0) benign(0.367) TCGA-KR-A7K7-01 3 47958322 47958322 T G MAP4 Missense_Mutation p.K332T 0.24 deleterious(0.02) possibly_damaging(0.507) TCGA-KR-A7K7-01 3 49693730 49693730 T G BSN Missense_Mutation p.I2247M 0.34 unknown(0) TCGA-KR-A7K7-01 4 86988958 86988958 A T MAPK10 Missense_Mutation p.F318Y 0.34 deleterious(0.01) probably_damaging(0.993) TCGA-KR-A7K7-01 5 112174286 112174286 C T APC Nonsense_Mutation p.Q999* 0.46 TCGA-KR-A7K7-01 5 118788315 118788315 C T HSD17B4 5'UTR 0.05 TCGA-KR-A7K7-01 5 1221849 1221849 C A SLC6A19 Missense_Mutation p.P579T 0.48 deleterious(0) probably_damaging(0.996) TCGA-KR-A7K7-01 5 140745479 140745479 C A PCDHGA5 Missense_Mutation p.L528I 0.19 tolerated_low_confidence(0.08) possibly_damaging(0.764) TCGA-KR-A7K7-01 6 20124766 20124766 C A MBOAT1 Missense_Mutation p.K260N 0.42 tolerated(0.05) possibly_damaging(0.794) TCGA-KR-A7K7-01 6 31084730 31084730 T C CDSN Missense_Mutation p.D221G 0.54 deleterious_low_confidence(0.01) unknown(0) TCGA-KR-A7K7-01 6 42610159 42610159 T G UBR2 Nonsense_Mutation p.Y679* 0.46 TCGA-KR-A7K7-01 6 70894595 70894595 G A COL19A1 Missense_Mutation p.G926R 0.31 deleterious(0) probably_damaging(1) TCGA-KR-A7K7-01 6 88227931 88227931 A G RARS2 Silent p.C489C 0.16 TCGA-KR-A7K7-01 7 116165144 116165144 G A CAV1 Missense_Mutation p.E10K 0.19 deleterious_low_confidence(0.04) benign(0.001) TCGA-KR-A7K7-01 7 28997603 28997603 C T AC005013.5 Intron 0.55 TCGA-KR-A7K7-01 7 5416611 5416611 T C TNRC18 Silent p.P825P 0.10 TCGA-KR-A7K7-01 7 93551361 93551362 - TA GNG11 5'UTR 0.40 TCGA-KR-A7K7-01 7 99764793 99764793 G C GAL3ST4 5'UTR 0.54 TCGA-KR-A7K7-01 8 101153180 101153180 T C FBXO43 Silent p.L434L 0.11 TCGA-KR-A7K7-01 8 110980791 110980791 G A KCNV1 Silent p.Y343Y 0.19 TCGA-KR-A7K7-01 8 113347573 113347574 - A CSMD3 Frame_Shift_Ins p.V2384Cfs*22 0.11 TCGA-KR-A7K7-01 8 145755886 145755886 C G ARHGAP39 Missense_Mutation p.E1089Q 0.14 deleterious(0) possibly_damaging(0.575) TCGA-KR-A7K7-01 8 48701573 48701573 G A PRKDC Missense_Mutation p.T3598I 0.70 benign(0.187) TCGA-KR-A7K7-01 9 140008803 140008803 G C DPP7 Missense_Mutation p.I71M 0.21 deleterious(0.03) probably_damaging(0.93) TCGA-KR-A7K7-01 9 35703656 35703656 C G TLN1 Silent p.V2125V 0.42 TCGA-KR-A7K7-01 9 86297921 86297921 T C UBQLN1 Silent p.S131S 0.10 TCGA-KR-A7K7-01 X 107422545 107422545 A C COL4A6 Missense_Mutation p.I753S 0.46 probably_damaging(0.992) TCGA-KR-A7K7-01 X 19560151 19560151 C T SH3KBP1 Missense_Mutation p.G595E 0.21 deleterious(0.01) probably_damaging(0.931) TCGA-KR-A7K8-01 10 38343571 38343571 T C ZNF33A Silent p.C173C 0.21 TCGA-KR-A7K8-01 10 5945117 5945117 A T FBXO18 Nonsense_Mutation p.R97* 0.12 TCGA-KR-A7K8-01 10 97197265 97197265 T A SORBS1 Missense_Mutation p.S20C 0.09 tolerated_low_confidence(0.06) possibly_damaging(0.839) TCGA-KR-A7K8-01 11 134127137 134127137 T C ACAD8 Silent p.Y122Y 0.05 TCGA-KR-A7K8-01 11 134134887 134134887 C T ACAD8 3'UTR 0.10 TCGA-KR-A7K8-01 11 2424029 2424029 G T TSSC4 Missense_Mutation p.G56W 0.12 deleterious(0.01) benign(0.068) TCGA-KR-A7K8-01 12 10228256 10228256 T C CLEC1A Splice_Site p.X131_splice 0.06 TCGA-KR-A7K8-01 12 123880924 123880924 T G SETD8 Missense_Mutation p.L181R 0.22 deleterious(0.04) benign(0.063) TCGA-KR-A7K8-01 12 12514204 12514204 C T LOH12CR1 Silent p.S41S 0.09 TCGA-KR-A7K8-01 12 52946794 52946794 A G KRT71 Missense_Mutation p.V23A 0.11 deleterious(0.04) probably_damaging(0.97) TCGA-KR-A7K8-01 13 114537552 114537552 T C GAS6 Missense_Mutation p.K269R 0.11 tolerated(0.12) probably_damaging(0.991) TCGA-KR-A7K8-01 14 106405819 106405819 T C IGHV6-1 Missense_Mutation p.N52S 0.14 tolerated(1) benign(0) TCGA-KR-A7K8-01 14 107048775 107048775 A G IGHV3-53 Missense_Mutation p.V82A 0.06 deleterious_low_confidence(0.02) benign(0.213) TCGA-KR-A7K8-01 14 51190328 51190328 C A NIN 3'Flank 0.15 TCGA-KR-A7K8-01 14 74009850 74009850 G A ACOT1 Missense_Mutation p.V253I 0.10 tolerated(0.59) benign(0.001) TCGA-KR-A7K8-01 15 101569225 101569225 G A LRRK1 Silent p.R917R 0.10 TCGA-KR-A7K8-01 15 29346940 29346940 A G APBA2 Missense_Mutation p.N285D 0.11 deleterious_low_confidence(0.02) benign(0.005) TCGA-KR-A7K8-01 15 41120819 41120819 A C PPP1R14D Silent p.A7A 0.20 TCGA-KR-A7K8-01 15 83481941 83481941 T A WHAMM Silent p.V232V 0.16 TCGA-KR-A7K8-01 15 89395101 89395101 C A ACAN Silent p.I701I 0.17 TCGA-KR-A7K8-01 16 2226683 2226683 G A TRAF7 3'UTR 0.16 TCGA-KR-A7K8-01 17 28525359 28525359 T A SLC6A4 3'UTR 0.13 TCGA-KR-A7K8-01 17 79638802 79638802 C T CCDC137 Nonsense_Mutation p.R176* 0.21 TCGA-KR-A7K8-01 18 23772351 23772352 - A PSMA8 Frame_Shift_Ins p.S252Ifs*16 0.14 TCGA-KR-A7K8-01 19 15288466 15288466 A G NOTCH3 Missense_Mutation p.W1425R 0.23 deleterious(0) probably_damaging(1) TCGA-KR-A7K8-01 19 55824349 55824349 C T TMEM150B Missense_Mutation p.A194T 0.12 tolerated(0.51) benign(0.004) TCGA-KR-A7K8-01 19 7570453 7570453 G A C19orf45 Missense_Mutation p.G316R 0.10 deleterious(0.02) probably_damaging(1) TCGA-KR-A7K8-01 1 161562024 161562024 G A FCGR2C 5'Flank 0.29 TCGA-KR-A7K8-01 1 183486833 183486833 G A SMG7 Missense_Mutation p.A64T 0.07 deleterious(0.04) probably_damaging(0.989) TCGA-KR-A7K8-01 1 204413483 204413483 T C PIK3C2B Silent p.L916L 0.06 TCGA-KR-A7K8-01 1 25229111 25229111 G A RUNX3 Silent p.R264R 0.17 TCGA-KR-A7K8-01 1 27106176 27106176 T - ARID1A Frame_Shift_Del p.S1930Qfs*26 0.08 TCGA-KR-A7K8-01 1 27722082 27722082 T G GPR3 3'UTR 0.10 TCGA-KR-A7K8-01 1 28802769 28802769 C G PHACTR4 Nonsense_Mutation p.Y534* 0.03 TCGA-KR-A7K8-01 1 51736890 51736890 T C RNF11 Missense_Mutation p.Y121H 0.11 deleterious(0) probably_damaging(0.996) TCGA-KR-A7K8-01 20 18296766 18296766 C A ZNF133 Missense_Mutation p.T423N 0.15 tolerated(0.79) possibly_damaging(0.881) TCGA-KR-A7K8-01 21 39755511 39755511 C T ERG Missense_Mutation p.M425I 0.14 tolerated(0.06) benign(0.009) TCGA-KR-A7K8-01 21 42551377 42551377 A C BACE2 Intron 0.09 TCGA-KR-A7K8-01 22 20229527 20229527 G A RTN4R Missense_Mutation p.R377W 0.37 deleterious(0) probably_damaging(0.973) TCGA-KR-A7K8-01 22 29907254 29907254 T A THOC5 Missense_Mutation p.K610M 0.13 tolerated(0.08) possibly_damaging(0.781) TCGA-KR-A7K8-01 22 36700184 36700184 G T MYH9 Silent p.L749L 0.16 TCGA-KR-A7K8-01 22 38882316 38882316 C G DDX17 Missense_Mutation p.R607P 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.525) TCGA-KR-A7K8-01 2 178097414 178097414 G C NFE2L2 Intron 0.35 TCGA-KR-A7K8-01 2 179614477 179614477 T A TTN Intron 0.05 TCGA-KR-A7K8-01 2 179614478 179614478 A C TTN Intron 0.05 TCGA-KR-A7K8-01 2 196891538 196891538 T C DNAH7 Missense_Mutation p.T205A 0.07 tolerated(0.72) benign(0) TCGA-KR-A7K8-01 2 220406323 220406323 A T CHPF Intron 0.11 TCGA-KR-A7K8-01 2 227729638 227729638 G A RHBDD1 Missense_Mutation p.D77N 0.10 tolerated(0.06) possibly_damaging(0.558) TCGA-KR-A7K8-01 2 234299114 234299114 C A DGKD Silent p.V111V 0.07 TCGA-KR-A7K8-01 3 111785346 111785346 C T TMPRSS7 Nonsense_Mutation p.Q429* 0.13 TCGA-KR-A7K8-01 3 14158003 14158003 A G CHCHD4 Missense_Mutation p.V28A 0.23 tolerated(0.26) benign(0.287) TCGA-KR-A7K8-01 3 191107379 191107379 T G CCDC50 Missense_Mutation p.S473A 0.06 tolerated(0.29) benign(0.089) TCGA-KR-A7K8-01 3 46008641 46008641 C A FYCO1 Nonsense_Mutation p.E729* 0.09 TCGA-KR-A7K8-01 3 66431944 66431944 G A LRIG1 Missense_Mutation p.A910V 0.05 tolerated(0.89) benign(0.001) TCGA-KR-A7K8-01 4 175564944 175564944 T G GLRA3 Missense_Mutation p.Q463P 0.12 deleterious_low_confidence(0.03) benign(0.029) TCGA-KR-A7K8-01 5 13776635 13776635 G A DNAH5 Nonsense_Mutation p.R3096* 0.09 TCGA-KR-A7K8-01 5 148206993 148206993 C T ADRB2 Missense_Mutation p.A200V 0.25 deleterious(0) probably_damaging(0.98) TCGA-KR-A7K8-01 5 41794272 41794272 C A OXCT1 Intron 0.19 TCGA-KR-A7K8-01 5 71756473 71756473 G A ZNF366 Missense_Mutation p.T284M 0.11 tolerated(0.11) possibly_damaging(0.687) TCGA-KR-A7K8-01 5 75906955 75906955 C T IQGAP2 Missense_Mutation p.H490Y 0.12 tolerated(1) benign(0) TCGA-KR-A7K8-01 6 117869356 117869356 C T DCBLD1 Intron 0.08 TCGA-KR-A7K8-01 6 132938785 132938785 C A TAAR2 Missense_Mutation p.G187V 0.13 deleterious(0) probably_damaging(1) TCGA-KR-A7K8-01 6 149771968 149771968 C T ZC3H12D Missense_Mutation p.A479T 0.27 tolerated(0.17) benign(0) TCGA-KR-A7K8-01 6 151687673 151687673 C A ZBTB2 Missense_Mutation p.Q176H 0.19 tolerated(0.13) benign(0.085) TCGA-KR-A7K8-01 6 24843221 24843221 T C FAM65B Missense_Mutation p.R597G 0.07 tolerated(0.14) possibly_damaging(0.627) TCGA-KR-A7K8-01 6 26045686 26045686 T A HIST1H3C Silent p.A16A 0.10 TCGA-KR-A7K8-01 6 28963560 28963560 T G ZNF311 Silent p.R407R 0.05 TCGA-KR-A7K8-01 6 31610118 31610118 C A BAG6 Missense_Mutation p.Q672H 0.15 tolerated(0.08) benign(0.146) TCGA-KR-A7K8-01 6 49989684 49989684 C T DEFB110 5'UTR 0.07 TCGA-KR-A7K8-01 6 52617735 52617735 A C GSTA2 Missense_Mutation p.F111V 0.09 tolerated(0.07) benign(0.005) TCGA-KR-A7K8-01 7 100875640 100875640 C A CLDN15 3'UTR 0.29 TCGA-KR-A7K8-01 7 103969491 103969491 G T LHFPL3 Silent p.L88L 0.20 TCGA-KR-A7K8-01 8 57354357 57354357 C T PENK Missense_Mutation p.S93N 0.13 tolerated(0.54) benign(0.002) TCGA-KR-A7K8-01 8 72975749 72975749 G T TRPA1 Missense_Mutation p.Q204K 0.09 tolerated(0.3) benign(0.159) TCGA-KR-A7K8-01 8 82357195 82357195 T C PMP2 Missense_Mutation p.N35D 0.20 tolerated(0.25) benign(0) TCGA-KR-A7K8-01 9 101570276 101570276 G T GALNT12 Missense_Mutation p.R99L 0.17 tolerated(0.08) benign(0.097) TCGA-KR-A7K8-01 9 135781136 135781136 A G TSC1 Missense_Mutation p.V610A 0.06 deleterious(0.01) benign(0.217) TCGA-KR-A7K8-01 9 138556579 138556579 A G LCN9 Missense_Mutation p.E82G 0.05 deleterious(0.01) probably_damaging(0.941) TCGA-KR-A7K8-01 9 841821 841821 A T DMRT1 5'UTR 0.14 TCGA-KR-A7K8-01 X 134947978 134947978 G C CT45A5 Missense_Mutation p.P116R 0.38 deleterious(0.01) possibly_damaging(0.563) TCGA-KR-A7K8-01 X 31139861 31139861 G T DMD 3'UTR 0.31 TCGA-LG-A6GG-01 10 100992230 100992230 A T HPSE2 Missense_Mutation p.L108H 0.86 deleterious(0) possibly_damaging(0.838) TCGA-LG-A6GG-01 10 23244758 23244758 C T ARMC3 Silent p.L63L 0.51 TCGA-LG-A6GG-01 10 45500030 45500030 A G ZNF22 3'UTR 0.86 TCGA-LG-A6GG-01 10 6257273 6257273 G T PFKFB3 Missense_Mutation p.V98F 0.11 possibly_damaging(0.76) TCGA-LG-A6GG-01 10 81317058 81317058 A C SFTPA2 Silent p.G218G 0.81 TCGA-LG-A6GG-01 11 100999049 100999049 T C PGR Silent p.G251G 0.21 TCGA-LG-A6GG-01 11 103350078 103350078 T A DYNC2H1 3'Flank 0.23 TCGA-LG-A6GG-01 11 117860245 117860245 A T IL10RA Missense_Mutation p.S93C 0.29 deleterious(0.05) benign(0.126) TCGA-LG-A6GG-01 11 119508959 119508959 T A RP11-196E1.3 Intron 0.17 TCGA-LG-A6GG-01 11 123676307 123676307 T A OR6M1 Missense_Mutation p.S251C 0.33 tolerated(0.06) possibly_damaging(0.617) TCGA-LG-A6GG-01 11 134131002 134131002 A G ACAD8 Missense_Mutation p.N257S 0.26 deleterious(0.01) benign(0.244) TCGA-LG-A6GG-01 11 2906437 2906437 C T CDKN1C Missense_Mutation p.V95M 0.30 deleterious(0) probably_damaging(0.96) TCGA-LG-A6GG-01 11 3721964 3721964 T A NUP98 Missense_Mutation p.L1206F 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-LG-A6GG-01 11 40137430 40137430 G T LRRC4C Missense_Mutation p.T138N 0.25 tolerated(0.21) benign(0.224) TCGA-LG-A6GG-01 11 4661505 4661505 T A OR51D1 Missense_Mutation p.L162Q 0.36 deleterious(0) probably_damaging(0.972) TCGA-LG-A6GG-01 11 4673751 4673751 T C OR51E1 5'UTR 0.19 TCGA-LG-A6GG-01 11 4790465 4790465 A C OR51F1 Missense_Mutation p.L228R 0.29 deleterious(0) probably_damaging(0.947) TCGA-LG-A6GG-01 11 5013519 5013519 T C MMP26 3'UTR 0.26 TCGA-LG-A6GG-01 11 58207528 58207528 A T OR5B12 Missense_Mutation p.Y33N 0.26 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-LG-A6GG-01 11 58347078 58347078 G A ZFP91 Silent p.K108K 0.23 TCGA-LG-A6GG-01 11 6261357 6261357 C T CNGA4 Silent p.R111R 0.30 TCGA-LG-A6GG-01 11 6292577 6292577 C T CCKBR Missense_Mutation p.A383V 0.28 deleterious(0) probably_damaging(0.983) TCGA-LG-A6GG-01 11 679715 679715 G T DEAF1 Missense_Mutation p.Q367K 0.19 deleterious(0.03) benign(0.031) TCGA-LG-A6GG-01 11 76858873 76858873 G A MYO7A Silent p.T54T 0.59 TCGA-LG-A6GG-01 11 89182674 89182674 T A NOX4 Missense_Mutation p.R95W 0.34 deleterious(0) probably_damaging(0.998) TCGA-LG-A6GG-01 11 94906456 94906456 A G SESN3 Missense_Mutation p.L481P 0.24 deleterious(0) probably_damaging(1) TCGA-LG-A6GG-01 12 113629261 113629261 G T RITA1 Missense_Mutation p.G150V 0.35 deleterious(0) probably_damaging(0.934) TCGA-LG-A6GG-01 12 117655927 117655927 G A NOS1 Nonsense_Mutation p.R1439* 0.29 TCGA-LG-A6GG-01 12 1192437 1192437 A C ERC1 Silent p.V259V 0.21 TCGA-LG-A6GG-01 12 2904411 2904411 G A FKBP4 Splice_Site p.X35_splice 0.40 TCGA-LG-A6GG-01 12 32900026 32900055 TTCTGTTTTTCTGATTTGCATAAGCAAAGG - YARS2 3'UTR 0.37 TCGA-LG-A6GG-01 12 48919696 48919696 A G OR8S1 Silent p.V94V 0.41 TCGA-LG-A6GG-01 12 52579367 52579367 T A KRT80 Missense_Mutation p.Q102L 0.38 deleterious(0) probably_damaging(0.909) TCGA-LG-A6GG-01 12 52635357 52635357 G T KRT7 Missense_Mutation p.K265N 0.39 deleterious(0) possibly_damaging(0.872) TCGA-LG-A6GG-01 12 57963063 57963063 A T KIF5A Missense_Mutation p.S282C 0.43 deleterious(0) probably_damaging(1) TCGA-LG-A6GG-01 12 89998055 89998055 G A ATP2B1 Silent p.S837S 0.41 TCGA-LG-A6GG-01 12 94243784 94243784 A T CRADD Missense_Mutation p.S113C 0.41 deleterious(0.04) possibly_damaging(0.863) TCGA-LG-A6GG-01 12 94972248 94972248 T A TMCC3 Silent p.T351T 0.59 TCGA-LG-A6GG-01 13 103288606 103288606 T A TPP2 Missense_Mutation p.N514K 0.36 tolerated(0.27) benign(0.218) TCGA-LG-A6GG-01 13 21296153 21296153 C A IL17D 3'UTR 0.45 TCGA-LG-A6GG-01 13 26789149 26789149 T A RNF6 Silent p.T290T 0.36 TCGA-LG-A6GG-01 13 29008090 29008090 T A FLT1 Missense_Mutation p.N227Y 0.49 deleterious(0.03) possibly_damaging(0.865) TCGA-LG-A6GG-01 13 39262723 39262723 A C FREM2 Silent p.V414V 0.36 TCGA-LG-A6GG-01 13 42044728 42044728 G C RGCC 3'UTR 0.48 TCGA-LG-A6GG-01 13 46946076 46946076 C T KIAA0226L Missense_Mutation p.G179S 0.42 tolerated(0.13) benign(0.107) TCGA-LG-A6GG-01 13 50207679 50207679 A T ARL11 3'UTR 0.43 TCGA-LG-A6GG-01 14 104206739 104206739 G A PPP1R13B Missense_Mutation p.P672S 0.48 deleterious(0) probably_damaging(0.999) TCGA-LG-A6GG-01 14 105349414 105349414 G C CEP170B Missense_Mutation p.G207A 0.52 tolerated(0.07) benign(0.011) TCGA-LG-A6GG-01 14 23635745 23635745 G C SLC7A8 Missense_Mutation p.N52K 0.42 deleterious(0) probably_damaging(0.999) TCGA-LG-A6GG-01 14 23859384 23859384 A T MYH6 Missense_Mutation p.L1205Q 0.40 deleterious(0) probably_damaging(0.971) TCGA-LG-A6GG-01 14 31084590 31084590 A G G2E3 Missense_Mutation p.E570G 0.39 deleterious(0.02) probably_damaging(1) TCGA-LG-A6GG-01 14 64694471 64694471 A T SYNE2 3'Flank 0.56 TCGA-LG-A6GG-01 14 70713155 70713155 C T ADAM21P1 RNA 0.45 TCGA-LG-A6GG-01 14 73989702 73989702 C A HEATR4 Missense_Mutation p.S52I 0.43 deleterious(0.02) possibly_damaging(0.736) TCGA-LG-A6GG-01 14 74191982 74191982 T C ELMSAN1 Missense_Mutation p.Q856R 0.38 deleterious(0) probably_damaging(0.993) TCGA-LG-A6GG-01 14 92609350 92609350 A G CPSF2 Silent p.V284V 0.38 TCGA-LG-A6GG-01 15 20874843 20874843 C A NBEAP1 RNA 0.23 TCGA-LG-A6GG-01 15 42139617 42139617 A G PLA2G4B Missense_Mutation p.Q908R 0.35 tolerated(0.18) benign(0.001) TCGA-LG-A6GG-01 15 42185565 42185565 T C SPTBN5 Missense_Mutation p.H44R 0.48 benign(0.081) TCGA-LG-A6GG-01 15 42566543 42566543 G C GANC 5'UTR 0.42 TCGA-LG-A6GG-01 15 48760297 48760297 T A FBN1 Missense_Mutation p.T1529S 0.42 benign(0.378) TCGA-LG-A6GG-01 15 64967591 64967591 T G ZNF609 Silent p.S846S 0.41 TCGA-LG-A6GG-01 15 68497753 68497753 T A CALML4 5'UTR 0.47 TCGA-LG-A6GG-01 15 83437679 83437679 A G FSD2 Silent p.T502T 0.44 TCGA-LG-A6GG-01 15 89008827 89008827 G C MRPL46 Missense_Mutation p.R136G 0.35 deleterious(0) probably_damaging(0.994) TCGA-LG-A6GG-01 16 18887703 18887703 C A SMG1 Missense_Mutation p.A545S 0.45 tolerated(0.16) benign(0.014) TCGA-LG-A6GG-01 16 23197855 23197855 A T SCNN1G Missense_Mutation p.H88L 0.46 deleterious(0.04) benign(0.41) TCGA-LG-A6GG-01 16 28222718 28222718 A T XPO6 5'UTR 0.48 TCGA-LG-A6GG-01 16 31765441 31765441 A G ZNF720 Intron 0.38 TCGA-LG-A6GG-01 16 3458764 3458764 G A ZNF174 Missense_Mutation p.G357R 0.42 tolerated(0.36) probably_damaging(0.954) TCGA-LG-A6GG-01 16 48395984 48395984 T G SIAH1 Missense_Mutation p.E150A 0.41 tolerated(0.13) benign(0.034) TCGA-LG-A6GG-01 16 65016064 65016064 G A CDH11 Silent p.P380P 0.74 TCGA-LG-A6GG-01 16 70299543 70299543 A G AARS Silent p.Y415Y 0.73 TCGA-LG-A6GG-01 17 18193874 18193874 T A TOP3A Missense_Mutation p.I532F 0.39 deleterious(0) probably_damaging(1) TCGA-LG-A6GG-01 17 18541690 18541690 C T TBC1D28 Missense_Mutation p.G108D 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-LG-A6GG-01 17 19284705 19284705 A T MAPK7 Missense_Mutation p.I395F 0.39 tolerated(0.34) unknown(0) TCGA-LG-A6GG-01 17 36868254 36868254 G C MLLT6 Missense_Mutation p.R236T 0.43 deleterious(0.02) unknown(0) TCGA-LG-A6GG-01 17 37371219 37371219 C A STAC2 Missense_Mutation p.G253W 0.30 deleterious(0.02) benign(0.008) TCGA-LG-A6GG-01 17 43037438 43037438 C T C1QL1 3'UTR 0.39 TCGA-LG-A6GG-01 17 43545720 43545720 T C PLEKHM1 Missense_Mutation p.Q388R 0.38 tolerated(0.2) benign(0.075) TCGA-LG-A6GG-01 17 56620661 56620661 A T C17orf47 Missense_Mutation p.L296H 0.28 tolerated(0.53) possibly_damaging(0.557) TCGA-LG-A6GG-01 17 59445783 59445783 G A BCAS3 Missense_Mutation p.E856K 0.21 tolerated(0.21) possibly_damaging(0.828) TCGA-LG-A6GG-01 17 61987909 61987909 G A CSHL1 Intron 0.31 TCGA-LG-A6GG-01 17 78450179 78450179 T A NPTX1 Missense_Mutation p.Q23L 0.29 deleterious(0.04) benign(0.354) TCGA-LG-A6GG-01 18 58039130 58039130 G A MC4R Silent p.I151I 0.33 TCGA-LG-A6GG-01 18 63530135 63530135 T A CDH7 Missense_Mutation p.C616S 0.44 deleterious(0.04) benign(0.299) TCGA-LG-A6GG-01 19 1052055 1052055 G A ABCA7 Missense_Mutation p.R1026H 0.43 deleterious(0.01) probably_damaging(0.931) TCGA-LG-A6GG-01 19 14846929 14846929 T C EMR2 3'UTR 0.46 TCGA-LG-A6GG-01 19 15063777 15063777 C A SLC1A6 Nonsense_Mutation p.E488* 0.29 TCGA-LG-A6GG-01 19 19790802 19790802 A G ZNF101 Missense_Mutation p.E335G 0.42 deleterious(0.01) possibly_damaging(0.617) TCGA-LG-A6GG-01 19 22836116 22836116 T A ZNF492 5'UTR 0.46 TCGA-LG-A6GG-01 19 31038966 31038966 G T ZNF536 Missense_Mutation p.G814W 0.47 deleterious(0) probably_damaging(0.971) TCGA-LG-A6GG-01 19 31038967 31038967 G T ZNF536 Missense_Mutation p.G814V 0.45 deleterious(0) possibly_damaging(0.619) TCGA-LG-A6GG-01 19 31768760 31768760 T G TSHZ3 Missense_Mutation p.S647R 0.42 tolerated(0.37) benign(0.287) TCGA-LG-A6GG-01 19 36269405 36269405 C T ARHGAP33 Missense_Mutation p.R104C 0.38 tolerated_low_confidence(0.1) possibly_damaging(0.835) TCGA-LG-A6GG-01 19 3648626 3648626 T A PIP5K1C Missense_Mutation p.Y403F 0.45 deleterious(0.02) possibly_damaging(0.803) TCGA-LG-A6GG-01 19 38024278 38024278 G A ZNF793 Missense_Mutation p.A71T 0.46 tolerated(0.5) benign(0.054) TCGA-LG-A6GG-01 19 3820200 3820200 G T ZFR2 Missense_Mutation p.P574T 0.37 deleterious(0) possibly_damaging(0.566) TCGA-LG-A6GG-01 19 40947776 40947776 A T SERTAD3 Missense_Mutation p.L71Q 0.34 deleterious(0.01) benign(0.403) TCGA-LG-A6GG-01 19 42353305 42353305 C - DMRTC2 Frame_Shift_Del p.P247Lfs*10 0.33 TCGA-LG-A6GG-01 19 44981527 44981527 T G ZNF180 Missense_Mutation p.S391R 0.44 tolerated(0.38) possibly_damaging(0.493) TCGA-LG-A6GG-01 19 47124692 47124692 G A PTGIR Missense_Mutation p.P336S 0.48 tolerated_low_confidence(0.07) benign(0.03) TCGA-LG-A6GG-01 19 48833658 48833658 G T EMP3 Silent p.L141L 0.09 TCGA-LG-A6GG-01 19 52375730 52375730 T C ZNF577 3'UTR 0.57 TCGA-LG-A6GG-01 19 54485674 54485674 G T CACNG8 Silent p.P283P 0.36 TCGA-LG-A6GG-01 19 58018610 58018610 G C ZNF773 Missense_Mutation p.G383R 0.42 deleterious(0) probably_damaging(1) TCGA-LG-A6GG-01 19 9074549 9074549 A T MUC16 Silent p.I4299I 0.79 TCGA-LG-A6GG-01 1 108686249 108686249 T C SLC25A24 Silent p.E338E 0.19 TCGA-LG-A6GG-01 1 112247100 112247100 G A RAP1A Missense_Mutation p.V154I 0.37 tolerated(0.1) benign(0.125) TCGA-LG-A6GG-01 1 149879627 149879627 T A SV2A Missense_Mutation p.Q504L 0.26 deleterious(0.04) benign(0.287) TCGA-LG-A6GG-01 1 152382364 152382364 T A CRNN Silent p.T398T 0.21 TCGA-LG-A6GG-01 1 154966209 154966209 C A LENEP Silent p.T42T 0.27 TCGA-LG-A6GG-01 1 167096126 167096126 G C DUSP27 Silent p.L586L 0.34 TCGA-LG-A6GG-01 1 174769333 174769333 A G RABGAP1L Intron 0.50 TCGA-LG-A6GG-01 1 181701627 181701627 C A CACNA1E Missense_Mutation p.A802E 0.31 tolerated(0.89) possibly_damaging(0.726) TCGA-LG-A6GG-01 1 20879387 20879387 T A FAM43B 5'UTR 0.54 TCGA-LG-A6GG-01 1 210591627 210591627 A T HHAT Missense_Mutation p.S273C 0.25 deleterious(0) probably_damaging(0.967) TCGA-LG-A6GG-01 1 2283310 2283310 C T MORN1 Intron 0.44 TCGA-LG-A6GG-01 1 232539296 232539296 C A SIPA1L2 Missense_Mutation p.C1613F 0.38 tolerated(1) possibly_damaging(0.866) TCGA-LG-A6GG-01 1 23759654 23759654 C T ASAP3 Missense_Mutation p.E747K 0.49 tolerated(0.28) benign(0.018) TCGA-LG-A6GG-01 1 240286488 240286488 T C FMN2 Missense_Mutation p.L542P 0.25 unknown(0) TCGA-LG-A6GG-01 1 242264076 242264076 A G PLD5 Silent p.F416F 0.23 TCGA-LG-A6GG-01 1 245250660 245250660 T A EFCAB2 Nonstop_Mutation p.*163Kext*3 0.22 TCGA-LG-A6GG-01 1 27102066 27102066 A T ARID1A Splice_Site p.X1665_splice 0.69 TCGA-LG-A6GG-01 1 35884069 35884069 A G ZMYM4 Silent p.K1445K 0.33 TCGA-LG-A6GG-01 1 3686347 3686347 C A CCDC27 Missense_Mutation p.L582I 0.35 deleterious(0) possibly_damaging(0.826) TCGA-LG-A6GG-01 1 43218272 43218272 T A LEPRE1 Missense_Mutation p.Q470L 0.23 deleterious(0.05) benign(0.132) TCGA-LG-A6GG-01 1 898282 898282 G A KLHL17 Missense_Mutation p.V343M 0.44 tolerated(0.11) possibly_damaging(0.671) TCGA-LG-A6GG-01 20 23548859 23548859 A G CST9L Missense_Mutation p.W77R 0.26 tolerated(0.33) benign(0.208) TCGA-LG-A6GG-01 20 31828158 31828158 C - BPIFA1 Frame_Shift_Del p.P184Lfs*28 0.20 TCGA-LG-A6GG-01 20 40944529 40944529 A T PTPRT Missense_Mutation p.L658H 0.34 tolerated(0.28) possibly_damaging(0.62) TCGA-LG-A6GG-01 20 43995834 43995834 A T SYS1 3'UTR 0.45 TCGA-LG-A6GG-01 20 44417609 44417609 T G WFDC3 Missense_Mutation p.T58P 0.25 deleterious(0.02) possibly_damaging(0.575) TCGA-LG-A6GG-01 20 57599165 57599165 T A TUBB1 Missense_Mutation p.L228Q 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-LG-A6GG-01 20 62670294 62670307 GAGGCCCGCCCTCC - ZNF512B Intron 0.68 TCGA-LG-A6GG-01 20 62837052 62837052 T A MYT1 Missense_Mutation p.V99E 0.29 benign(0.001) TCGA-LG-A6GG-01 21 45710937 45710937 A G AIRE Intron 0.79 TCGA-LG-A6GG-01 21 47722400 47722400 T A C21orf58 Missense_Mutation p.Q271L 0.70 tolerated(0.25) possibly_damaging(0.803) TCGA-LG-A6GG-01 22 18981959 18981959 C T DGCR5 RNA 0.30 TCGA-LG-A6GG-01 22 31006953 31006953 A G TCN2 Missense_Mutation p.I54V 0.37 tolerated(0.29) benign(0.035) TCGA-LG-A6GG-01 22 40859326 40859326 T A MKL1 Intron 0.29 TCGA-LG-A6GG-01 22 50682173 50682173 G A TUBGCP6 Missense_Mutation p.A239V 0.11 tolerated(0.22) probably_damaging(0.995) TCGA-LG-A6GG-01 2 105890085 105890085 T A TGFBRAP1 Silent p.P576P 0.31 TCGA-LG-A6GG-01 2 112732991 112732991 G T MERTK Missense_Mutation p.M362I 0.40 tolerated(0.26) benign(0.1) TCGA-LG-A6GG-01 2 11337476 11337476 T A ROCK2 Splice_Site p.X1094_splice 0.27 TCGA-LG-A6GG-01 2 116525912 116525912 T A DPP10 Missense_Mutation p.F389I 0.29 deleterious(0) probably_damaging(0.932) TCGA-LG-A6GG-01 2 128249666 128249666 T A IWS1 Splice_Site p.X644_splice 0.29 TCGA-LG-A6GG-01 2 136567010 136567010 C T LCT Silent p.L969L 0.22 TCGA-LG-A6GG-01 2 178494226 178494226 T A PDE11A Missense_Mutation p.K904M 0.32 deleterious(0.01) benign(0.094) TCGA-LG-A6GG-01 2 179641996 179641996 A G TTN Missense_Mutation p.V1565A 0.20 TCGA-LG-A6GG-01 2 183866687 183866687 A G NCKAP1 Silent p.H205H 0.27 TCGA-LG-A6GG-01 2 207176232 207176232 A T ZDBF2 Missense_Mutation p.D2327V 0.25 deleterious(0.04) benign(0.03) TCGA-LG-A6GG-01 2 210818961 210818961 A G UNC80 Missense_Mutation p.Q2409R 0.26 benign(0.395) TCGA-LG-A6GG-01 2 23980759 23980759 T C ATAD2B Missense_Mutation p.M1203V 0.31 tolerated(0.54) benign(0) TCGA-LG-A6GG-01 2 241463387 241463387 T A ANKMY1 Missense_Mutation p.S494C 0.28 deleterious(0.01) probably_damaging(0.91) TCGA-LG-A6GG-01 2 241813413 241813413 C T AGXT Missense_Mutation p.S205L 0.48 deleterious(0) probably_damaging(0.996) TCGA-LG-A6GG-01 2 26915803 26915803 G T KCNK3 Silent p.L20L 0.28 TCGA-LG-A6GG-01 2 84832704 84832704 A T DNAH6 Silent p.T1054T 0.35 TCGA-LG-A6GG-01 2 89384687 89384687 A T IGKV3-15 Missense_Mutation p.Y111N 0.22 tolerated(0.15) benign(0.009) TCGA-LG-A6GG-01 2 89459329 89459329 C T IGKV6-21 Missense_Mutation p.G83D 0.23 deleterious(0.01) probably_damaging(0.975) TCGA-LG-A6GG-01 2 98779401 98779401 C T VWA3B Missense_Mutation p.A359V 0.32 tolerated(0.19) benign(0.006) TCGA-LG-A6GG-01 3 119120710 119120710 G A ARHGAP31 Missense_Mutation p.G371S 0.40 tolerated(0.07) possibly_damaging(0.83) TCGA-LG-A6GG-01 3 119886209 119886209 G C GPR156 Silent p.A705A 0.31 TCGA-LG-A6GG-01 3 121341447 121341447 C G FBXO40 Missense_Mutation p.P391A 0.44 deleterious(0.02) probably_damaging(0.982) TCGA-LG-A6GG-01 3 130285713 130285713 T A COL6A6 Missense_Mutation p.W484R 0.41 tolerated(0.35) probably_damaging(0.958) TCGA-LG-A6GG-01 3 15137554 15137554 G T ZFYVE20 Missense_Mutation p.S25Y 0.08 deleterious(0) probably_damaging(0.95) TCGA-LG-A6GG-01 3 15475936 15475936 T G EAF1 Silent p.P139P 0.41 TCGA-LG-A6GG-01 3 16630010 16630010 G T DAZL 3'UTR 0.34 TCGA-LG-A6GG-01 3 169684454 169684454 C T SEC62 5'Flank 0.40 TCGA-LG-A6GG-01 3 186937840 186937840 T A MASP1 3'UTR 0.46 TCGA-LG-A6GG-01 3 195013010 195013010 A T ACAP2 Missense_Mutation p.I646N 0.35 deleterious(0) possibly_damaging(0.883) TCGA-LG-A6GG-01 3 20156480 20156480 G T KAT2B Missense_Mutation p.V384F 0.36 tolerated(0.54) possibly_damaging(0.606) TCGA-LG-A6GG-01 3 20156481 20156481 G T KAT2B Splice_Site p.X384_splice 0.37 TCGA-LG-A6GG-01 3 20156482 20156482 T G KAT2B Splice_Site p.X384_splice 0.32 TCGA-LG-A6GG-01 3 27216224 27216224 T A NEK10 Missense_Mutation p.Q869L 0.47 deleterious(0.02) benign(0.389) TCGA-LG-A6GG-01 3 38158025 38158025 C T DLEC1 Missense_Mutation p.P1313L 0.40 deleterious(0.02) benign(0.238) TCGA-LG-A6GG-01 3 47461017 47461017 G T SCAP Missense_Mutation p.P581T 0.37 tolerated(0.06) benign(0.003) TCGA-LG-A6GG-01 3 48310280 48310280 C T ZNF589 3'UTR 0.41 TCGA-LG-A6GG-01 3 73432795 73432795 G T PDZRN3 Missense_Mutation p.S974R 0.38 deleterious(0) probably_damaging(0.986) TCGA-LG-A6GG-01 3 73673351 73673351 A C PDZRN3 Missense_Mutation p.L209R 0.43 deleterious(0) benign(0.127) TCGA-LG-A6GG-01 3 97851772 97851772 G T OR5H1 Silent p.V77V 0.39 TCGA-LG-A6GG-01 4 1084625 1084625 A T RNF212 Missense_Mutation p.I83N 0.26 deleterious(0) probably_damaging(0.957) TCGA-LG-A6GG-01 4 110685711 110685711 A C CFI Missense_Mutation p.L155R 0.51 tolerated(0.54) benign(0.006) TCGA-LG-A6GG-01 4 110897334 110897334 A T EGF Missense_Mutation p.I666F 0.61 deleterious(0) probably_damaging(0.978) TCGA-LG-A6GG-01 4 120189490 120189490 G A USP53 Silent p.K401K 0.29 TCGA-LG-A6GG-01 4 135121211 135121211 C A PABPC4L Missense_Mutation p.V380F 0.27 deleterious(0) possibly_damaging(0.868) TCGA-LG-A6GG-01 4 166996136 166996136 T A TLL1 Missense_Mutation p.N765K 0.10 deleterious(0.02) possibly_damaging(0.656) TCGA-LG-A6GG-01 4 174253236 174253236 C T HMGB2 Missense_Mutation p.E209K 0.20 deleterious_low_confidence(0) unknown(0) TCGA-LG-A6GG-01 4 188924650 188924650 C A ZFP42 Nonsense_Mutation p.S230* 0.59 TCGA-LG-A6GG-01 4 30723268 30723268 T A PCDH7 Missense_Mutation p.L75Q 0.25 deleterious(0) possibly_damaging(0.861) TCGA-LG-A6GG-01 4 71200710 71200710 G A CABS1 5'UTR 0.70 TCGA-LG-A6GG-01 4 8031435 8031435 G A ABLIM2 Silent p.S372S 0.26 TCGA-LG-A6GG-01 4 887684 887684 G T GAK Nonsense_Mutation p.Y285* 0.28 TCGA-LG-A6GG-01 4 89329771 89329771 T C HERC6 Splice_Site p.X456_splice 0.67 TCGA-LG-A6GG-01 5 115783094 115783094 G A SEMA6A Missense_Mutation p.P770S 0.55 deleterious(0.01) possibly_damaging(0.698) TCGA-LG-A6GG-01 5 140740665 140740665 A C PCDHGB2 Silent p.A321A 0.21 TCGA-LG-A6GG-01 5 140773878 140773878 C T PCDHGA8 Missense_Mutation p.P500S 0.48 deleterious_low_confidence(0.05) possibly_damaging(0.511) TCGA-LG-A6GG-01 5 156522415 156522415 C A HAVCR2 Missense_Mutation p.R193L 0.47 deleterious(0.03) benign(0.002) TCGA-LG-A6GG-01 5 156590005 156590005 A T FAM71B Missense_Mutation p.V424D 0.23 tolerated(0.22) benign(0) TCGA-LG-A6GG-01 5 16682120 16682120 G A MYO10 Missense_Mutation p.P1350L 0.23 deleterious(0) benign(0.36) TCGA-LG-A6GG-01 5 175774922 175774922 A C KIAA1191 Splice_Site p.X237_splice 0.26 TCGA-LG-A6GG-01 5 180684462 180684462 G T TRIM52 Missense_Mutation p.L283I 0.19 tolerated_low_confidence(0.55) benign(0.01) TCGA-LG-A6GG-01 5 64314355 64314355 A T CWC27 3'UTR 0.19 TCGA-LG-A6GG-01 5 89925133 89925133 T C GPR98 Missense_Mutation p.L539S 0.48 possibly_damaging(0.86) TCGA-LG-A6GG-01 6 106553643 106553643 A T PRDM1 Silent p.A536A 0.39 TCGA-LG-A6GG-01 6 111688372 111688372 T A REV3L Nonsense_Mutation p.R2207* 0.43 TCGA-LG-A6GG-01 6 111693804 111693804 C T REV3L Silent p.K1918K 0.49 TCGA-LG-A6GG-01 6 117686251 117686251 T A ROS1 Silent p.T1030T 0.43 TCGA-LG-A6GG-01 6 117746858 117746858 T A ROS1 5'UTR 0.48 TCGA-LG-A6GG-01 6 131910712 131910712 G T MED23 Missense_Mutation p.L1278M 0.36 deleterious(0) probably_damaging(0.995) TCGA-LG-A6GG-01 6 135715921 135715921 A C AHI1 Silent p.T1034T 0.34 TCGA-LG-A6GG-01 6 155145419 155145419 C A SCAF8 Missense_Mutation p.P660T 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-LG-A6GG-01 6 166862319 166862319 T A RPS6KA2 Missense_Mutation p.I417F 0.50 tolerated(0.72) benign(0.019) TCGA-LG-A6GG-01 6 169639734 169639734 T C THBS2 Silent p.P363P 0.41 TCGA-LG-A6GG-01 6 25850686 25850686 C T SLC17A3 Splice_Site p.X331_splice 0.26 TCGA-LG-A6GG-01 6 26184113 26184113 C G HIST1H2BE Silent p.R30R 0.26 TCGA-LG-A6GG-01 6 35428340 35428340 A G FANCE Missense_Mutation p.E443G 0.27 deleterious(0) possibly_damaging(0.479) TCGA-LG-A6GG-01 6 37611713 37611713 T C MDGA1 Missense_Mutation p.Y803C 0.25 deleterious(0) probably_damaging(0.999) TCGA-LG-A6GG-01 6 39311593 39311593 T A KIF6 Splice_Site p.X774_splice 0.36 TCGA-LG-A6GG-01 6 42200563 42200563 T C TRERF1 Missense_Mutation p.K1045R 0.16 deleterious(0.03) benign(0) TCGA-LG-A6GG-01 6 47846685 47846685 A T PTCHD4 Missense_Mutation p.L632Q 0.24 deleterious(0) probably_damaging(0.996) TCGA-LG-A6GG-01 6 5086148 5086148 C A PPP1R3G Silent p.A143A 0.35 TCGA-LG-A6GG-01 6 51923279 51923279 A T PKHD1 Missense_Mutation p.Y452N 0.34 deleterious(0) probably_damaging(0.98) TCGA-LG-A6GG-01 6 62390799 62390799 G C KHDRBS2 3'UTR 0.34 TCGA-LG-A6GG-01 6 70981793 70981793 T A COL9A1 Splice_Site p.X356_splice 0.29 TCGA-LG-A6GG-01 6 71665601 71665601 G T B3GAT2 Missense_Mutation p.P178T 0.30 tolerated(0.06) benign(0.006) TCGA-LG-A6GG-01 6 79688417 79688417 C G PHIP Silent p.V927V 0.47 TCGA-LG-A6GG-01 6 90388402 90388402 C T MDN1 Missense_Mutation p.E4110K 0.34 possibly_damaging(0.656) TCGA-LG-A6GG-01 6 96657166 96657166 G T FUT9 3'UTR 0.40 TCGA-LG-A6GG-01 6 97512550 97512550 G T KLHL32 Missense_Mutation p.S120I 0.35 deleterious(0) probably_damaging(0.999) TCGA-LG-A6GG-01 6 99374696 99374696 C A FBXL4 Nonsense_Mutation p.E57* 0.46 TCGA-LG-A6GG-01 7 101176396 101176396 G T COL26A1 Missense_Mutation p.S140I 0.21 deleterious(0.01) benign(0.266) TCGA-LG-A6GG-01 7 102953436 102953436 C T DNAJC2 Silent p.A583A 0.36 TCGA-LG-A6GG-01 7 111575684 111575684 C G DOCK4 Splice_Site p.X326_splice 0.26 TCGA-LG-A6GG-01 7 117003530 117003530 T - ASZ1 3'UTR 0.25 TCGA-LG-A6GG-01 7 123269106 123269106 C T ASB15 Missense_Mutation p.A353V 0.29 tolerated(0.07) possibly_damaging(0.721) TCGA-LG-A6GG-01 7 143043750 143043750 A T CLCN1 Missense_Mutation p.Q788L 0.25 tolerated(0.09) benign(0.443) TCGA-LG-A6GG-01 7 144096937 144096937 C A NOBOX Missense_Mutation p.R356L 0.32 deleterious(0) probably_damaging(0.999) TCGA-LG-A6GG-01 7 151873528 151873528 G C KMT2C Missense_Mutation p.L3004V 0.27 benign(0.097) TCGA-LG-A6GG-01 7 2252879 2252879 C T MAD1L1 Silent p.E318E 0.36 TCGA-LG-A6GG-01 7 2951897 2951897 T C CARD11 Missense_Mutation p.Q1018R 0.39 tolerated(0.08) benign(0.24) TCGA-LG-A6GG-01 7 34917718 34917718 T A NPSR1 Silent p.A352A 0.29 TCGA-LG-A6GG-01 7 37780305 37780305 C G GPR141 Missense_Mutation p.L104V 0.28 tolerated(0.24) possibly_damaging(0.615) TCGA-LG-A6GG-01 7 45120738 45120738 T A NACAD Missense_Mutation p.Y1461F 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-LG-A6GG-01 7 47886593 47886593 T A PKD1L1 Silent p.A1679A 0.34 TCGA-LG-A6GG-01 7 50611801 50611801 A T DDC 5'UTR 0.44 TCGA-LG-A6GG-01 7 5336621 5336621 C G SLC29A4 Missense_Mutation p.P225R 0.19 tolerated(0.1) benign(0.033) TCGA-LG-A6GG-01 7 72849306 72849306 C T FZD9 Silent p.F323F 0.31 TCGA-LG-A6GG-01 7 75176292 75176292 T A HIP1 Missense_Mutation p.Q835L 0.24 deleterious(0.02) benign(0.043) TCGA-LG-A6GG-01 7 83675692 83675692 A C SEMA3A Silent p.L205L 0.29 TCGA-LG-A6GG-01 7 92763732 92763732 T G SAMD9L Missense_Mutation p.Q518P 0.34 tolerated(0.16) benign(0.047) TCGA-LG-A6GG-01 7 99506413 99506413 A G TRIM4 Missense_Mutation p.M197T 0.27 tolerated(0.41) benign(0.001) TCGA-LG-A6GG-01 7 99778164 99778164 C A STAG3 5'UTR 0.21 TCGA-LG-A6GG-01 8 110471959 110471959 A C PKHD1L1 Missense_Mutation p.E2380D 0.39 tolerated(0.21) benign(0.005) TCGA-LG-A6GG-01 8 122626466 122626466 A T HAS2 Silent p.V514V 0.41 TCGA-LG-A6GG-01 8 144698802 144698802 T G TSTA3 Silent p.V27V 0.46 TCGA-LG-A6GG-01 8 41547821 41547821 A T ANK1 Missense_Mutation p.L1384Q 0.46 deleterious(0) possibly_damaging(0.813) TCGA-LG-A6GG-01 8 53050033 53050033 G T ST18 Missense_Mutation p.P727T 0.34 deleterious(0.02) probably_damaging(1) TCGA-LG-A6GG-01 8 55533794 55533794 C G RP1 Missense_Mutation p.H90D 0.56 deleterious(0) probably_damaging(0.999) TCGA-LG-A6GG-01 8 61769252 61769252 A G CHD7 Silent p.S2471S 0.50 TCGA-LG-A6GG-01 8 77895734 77895734 A T PEX2 Silent p.L227L 0.29 TCGA-LG-A6GG-01 8 77895736 77895736 G A PEX2 Missense_Mutation p.L227F 0.28 tolerated(0.26) benign(0.01) TCGA-LG-A6GG-01 8 77895737 77895737 A T PEX2 Silent p.P226P 0.29 TCGA-LG-A6GG-01 8 87076277 87076277 T A PSKH2 Missense_Mutation p.S257C 0.42 tolerated(0.53) possibly_damaging(0.582) TCGA-LG-A6GG-01 9 121976051 121976051 A G BRINP1 Intron 0.70 TCGA-LG-A6GG-01 9 130106562 130106562 A G GARNL3 Missense_Mutation p.K434E 0.44 tolerated(0.22) benign(0.176) TCGA-LG-A6GG-01 9 131763862 131763862 G A NUP188 Missense_Mutation p.G1300S 0.44 tolerated(0.25) possibly_damaging(0.851) TCGA-LG-A6GG-01 9 140160781 140160781 A G NELFB Splice_Site p.X334_splice 0.38 TCGA-LG-A6GG-01 9 17309125 17309125 A T CNTLN Missense_Mutation p.T406S 0.42 deleterious(0.03) benign(0.001) TCGA-LG-A6GG-01 9 86284174 86284174 G T UBQLN1 Missense_Mutation p.Q392K 0.40 deleterious(0.02) possibly_damaging(0.824) TCGA-LG-A6GG-01 X 141291161 141291161 A T MAGEC2 Missense_Mutation p.F205I 0.44 deleterious(0.03) benign(0.069) TCGA-LG-A6GG-01 X 150349506 150349506 C A GPR50 Missense_Mutation p.A484D 0.39 deleterious_low_confidence(0) benign(0.299) TCGA-LG-A6GG-01 X 23693213 23693213 C G PRDX4 Missense_Mutation p.H156D 0.39 deleterious(0) probably_damaging(1) TCGA-LG-A6GG-01 X 54982655 54982655 A C PFKFB1 Missense_Mutation p.L190R 0.10 possibly_damaging(0.475) TCGA-LG-A6GG-01 X 95940062 95940062 A C DIAPH2 Missense_Mutation p.E2A 0.44 deleterious_low_confidence(0) unknown(0) TCGA-LG-A9QC-01 10 75071614 75071614 A T TTC18 Missense_Mutation p.L451Q 0.41 tolerated(0.62) benign(0.347) TCGA-LG-A9QC-01 10 78799394 78799394 A G KCNMA1 Missense_Mutation p.I584T 0.04 tolerated(0.75) benign(0.018) TCGA-LG-A9QC-01 11 125660434 125660434 T A PATE3 Missense_Mutation p.D78E 0.41 tolerated(0.74) benign(0.003) TCGA-LG-A9QC-01 11 60619960 60619960 C - PTGDR2 3'UTR 0.23 TCGA-LG-A9QC-01 12 10560370 10560370 C T KLRC4 Missense_Mutation p.C120Y 0.40 deleterious(0.01) possibly_damaging(0.891) TCGA-LG-A9QC-01 12 112673432 112673432 G A HECTD4 Silent p.N1721N 0.38 TCGA-LG-A9QC-01 12 1192720 1192720 G A ERC1 Missense_Mutation p.E354K 0.38 tolerated(0.1) possibly_damaging(0.489) TCGA-LG-A9QC-01 12 132685703 132685703 A G GALNT9 Missense_Mutation p.M90T 0.41 deleterious(0) probably_damaging(0.978) TCGA-LG-A9QC-01 12 55038527 55038527 G A DCD Silent p.D101D 0.42 TCGA-LG-A9QC-01 13 108882950 108882950 G T ABHD13 3'UTR 0.46 TCGA-LG-A9QC-01 13 36871924 36871924 C G CCDC169 5'Flank 0.42 TCGA-LG-A9QC-01 13 37586414 37586414 G T SUPT20H Silent p.T671T 0.05 TCGA-LG-A9QC-01 14 34269678 34269678 A T NPAS3 Missense_Mutation p.D722V 0.36 deleterious_low_confidence(0) benign(0.011) TCGA-LG-A9QC-01 14 88857757 88857757 C G SPATA7 Missense_Mutation p.P18A 0.40 deleterious(0.03) benign(0.162) TCGA-LG-A9QC-01 15 41063705 41063705 G A C15orf62 3'UTR 0.35 TCGA-LG-A9QC-01 15 43444066 43444066 C A TMEM62 Silent p.I315I 0.05 TCGA-LG-A9QC-01 15 65551517 65551517 A C PARP16 3'UTR 0.41 TCGA-LG-A9QC-01 16 27460045 27460045 C T IL21R Missense_Mutation p.P353L 0.08 tolerated(0.26) benign(0.001) TCGA-LG-A9QC-01 16 67319052 67319052 G A PLEKHG4 Missense_Mutation p.G710D 0.37 tolerated(0.14) benign(0.005) TCGA-LG-A9QC-01 16 75681935 75681948 CCGTGTGCCGAGTG - TERF2IP Frame_Shift_Del p.V53Gfs*20 0.44 TCGA-LG-A9QC-01 17 10430110 10430110 G T MYH2 Silent p.A1331A 0.32 TCGA-LG-A9QC-01 17 27209141 27209141 T C FLOT2 Missense_Mutation p.I232V 0.36 tolerated(0.08) benign(0.001) TCGA-LG-A9QC-01 17 62290608 62290608 T C TEX2 Missense_Mutation p.S324G 0.40 tolerated(0.08) probably_damaging(0.989) TCGA-LG-A9QC-01 17 68129763 68129763 G T KCNJ16 3'UTR 0.22 TCGA-LG-A9QC-01 17 76556831 76556831 G A DNAH17 Silent p.F674F 0.25 TCGA-LG-A9QC-01 18 32823230 32823230 T A ZNF397 Missense_Mutation p.W177R 0.42 tolerated(0.35) benign(0.004) TCGA-LG-A9QC-01 19 10248604 10248604 T G DNMT1 Silent p.A1399A 0.39 TCGA-LG-A9QC-01 19 18174687 18174687 G A IL12RB1 Silent p.I539I 0.33 TCGA-LG-A9QC-01 19 39281456 39281456 C T LGALS7B Missense_Mutation p.R75C 0.38 deleterious(0) probably_damaging(0.996) TCGA-LG-A9QC-01 19 41078287 41078287 G T SPTBN4 Splice_Site p.X2512_splice 0.26 TCGA-LG-A9QC-01 19 58198707 58198707 G T ZNF551 Missense_Mutation p.R355I 0.06 deleterious(0.01) probably_damaging(0.99) TCGA-LG-A9QC-01 1 111702018 111702018 A G CEPT1 Missense_Mutation p.Y119C 0.09 tolerated(0.22) probably_damaging(0.999) TCGA-LG-A9QC-01 1 151259173 151259173 G - ZNF687 Frame_Shift_Del p.G136Efs*55 0.23 TCGA-LG-A9QC-01 1 201056982 201056982 G A CACNA1S Missense_Mutation p.L326F 0.27 deleterious(0) probably_damaging(0.998) TCGA-LG-A9QC-01 1 228509374 228509374 T A OBSCN Missense_Mutation p.H5901Q 0.31 probably_damaging(0.955) TCGA-LG-A9QC-01 1 244218707 244218707 C T ZBTB18 3'UTR 0.19 TCGA-LG-A9QC-01 1 39876450 39876450 C T KIAA0754 Silent p.S35S 0.69 TCGA-LG-A9QC-01 22 36702652 36702652 C T MYH9 Silent p.V615V 0.39 TCGA-LG-A9QC-01 2 167089924 167089924 C T SCN9A Missense_Mutation p.G1273S 0.26 tolerated(0.13) benign(0.226) TCGA-LG-A9QC-01 2 170058314 170058314 C A LRP2 Missense_Mutation p.R2759L 0.37 possibly_damaging(0.532) TCGA-LG-A9QC-01 2 20838354 20838354 G A HS1BP3 Silent p.G155G 0.42 TCGA-LG-A9QC-01 2 231175476 231175476 C A SP140 Silent p.I731I 0.34 TCGA-LG-A9QC-01 2 27257068 27257068 G A TMEM214 Silent p.V95V 0.43 TCGA-LG-A9QC-01 2 55771427 55771427 G - CCDC104 Frame_Shift_Del p.M284Cfs*3 0.26 TCGA-LG-A9QC-01 2 85554487 85554487 G C TGOLN2 Missense_Mutation p.T123S 0.38 tolerated(0.93) benign(0) TCGA-LG-A9QC-01 3 112738541 112738541 C - C3orf17 5'UTR 0.38 TCGA-LG-A9QC-01 3 37366761 37366761 T C GOLGA4 Silent p.D1150D 0.03 TCGA-LG-A9QC-01 3 52598082 52598082 C T PBRM1 Missense_Mutation p.E1262K 0.70 deleterious(0) possibly_damaging(0.486) TCGA-LG-A9QC-01 3 53925935 53925935 G A SELK 5'UTR 0.19 TCGA-LG-A9QC-01 4 98902341 98902341 G C STPG2 Missense_Mutation p.F247L 0.14 deleterious(0) probably_damaging(1) TCGA-LG-A9QC-01 5 112891817 112891817 A G YTHDC2 Missense_Mutation p.I734M 0.23 tolerated(0.11) benign(0.264) TCGA-LG-A9QC-01 5 149677472 149677472 G A ARSI Missense_Mutation p.R339W 0.06 tolerated(0.06) probably_damaging(0.941) TCGA-LG-A9QC-01 5 175959076 175959076 C A RNF44 Missense_Mutation p.A76S 0.30 deleterious(0.05) benign(0.009) TCGA-LG-A9QC-01 5 72743607 72743607 C T FOXD1 Missense_Mutation p.G194D 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-LG-A9QC-01 6 111714108 111714108 T C REV3L Silent p.L211L 0.42 TCGA-LG-A9QC-01 6 2678490 2678490 T G MYLK4 Missense_Mutation p.K335T 0.35 deleterious(0.01) probably_damaging(0.944) TCGA-LG-A9QC-01 6 34950976 34950976 G A ANKS1A Missense_Mutation p.A299T 0.31 tolerated(0.24) possibly_damaging(0.764) TCGA-LG-A9QC-01 6 43034898 43034898 A G KLC4 Intron 0.38 TCGA-LG-A9QC-01 7 139281611 139281611 A T HIPK2 Missense_Mutation p.C857S 0.51 tolerated(0.27) benign(0.045) TCGA-LG-A9QC-01 7 149571165 149571165 A G ATP6V0E2 Missense_Mutation p.H53R 0.43 deleterious_low_confidence(0.01) probably_damaging(0.977) TCGA-LG-A9QC-01 7 2752261 2752261 C A AMZ1 Missense_Mutation p.Q416K 0.33 tolerated(0.43) benign(0.07) TCGA-LG-A9QC-01 7 37903054 37903054 T C NME8 Silent p.C148C 0.44 TCGA-LG-A9QC-01 8 143996509 143996509 C T CYP11B2 Missense_Mutation p.S183N 0.46 deleterious(0) possibly_damaging(0.906) TCGA-LG-A9QC-01 8 1616621 1616621 G A DLGAP2 Missense_Mutation p.R566H 0.04 tolerated(0.13) possibly_damaging(0.879) TCGA-LG-A9QC-01 8 21984727 21984727 C A HR Missense_Mutation p.A410S 0.71 tolerated(0.15) benign(0.035) TCGA-LG-A9QC-01 9 103213356 103213356 A T MSANTD3 3'UTR 0.35 TCGA-LG-A9QC-01 9 113205721 113205721 C G SVEP1 Intron 0.36 TCGA-LG-A9QC-01 9 123777539 123777539 T C C5 Missense_Mutation p.D666G 0.29 tolerated(0.23) benign(0.011) TCGA-LG-A9QC-01 9 139927656 139927656 C T C9orf139 Silent p.D47D 0.39 TCGA-LG-A9QC-01 9 78506025 78506025 G C PCSK5 5'UTR 0.40 TCGA-LG-A9QC-01 X 14549218 14549218 A T GLRA2 Intron 0.91 TCGA-LG-A9QC-01 X 44950048 44950048 C - KDM6A Frame_Shift_Del p.L1273Ffs*19 0.43 TCGA-LG-A9QC-01 X 7137667 7137667 A G STS 5'UTR 0.05 TCGA-LG-A9QD-01 10 1094891 1094891 C A IDI1 Missense_Mutation p.R18L 0.27 tolerated_low_confidence(0.4) benign(0) TCGA-LG-A9QD-01 10 6061870 6061870 A G IL2RA Silent p.R206R 0.24 TCGA-LG-A9QD-01 10 76789928 76789928 T A KAT6B Silent p.A1782A 0.39 TCGA-LG-A9QD-01 10 85970828 85970828 C T CDHR1 Silent p.D464D 0.26 TCGA-LG-A9QD-01 11 103908795 103908795 A G DDI1 3'UTR 0.33 TCGA-LG-A9QD-01 11 108047094 108047094 T A NPAT Silent p.T337T 0.25 TCGA-LG-A9QD-01 11 1161279 1161279 C T MUC5AC Missense_Mutation p.T485I 0.16 deleterious(0) probably_damaging(0.943) TCGA-LG-A9QD-01 11 118868995 118868995 C G CCDC84 Missense_Mutation p.L30V 0.33 deleterious(0) possibly_damaging(0.884) TCGA-LG-A9QD-01 11 118978593 118978593 C T C2CD2L Missense_Mutation p.P48S 0.24 tolerated(0.29) benign(0.002) TCGA-LG-A9QD-01 11 121492888 121492888 G A SORL1 Missense_Mutation p.D2028N 0.20 tolerated(0.09) possibly_damaging(0.67) TCGA-LG-A9QD-01 11 130066301 130066301 C G ST14 Missense_Mutation p.A394G 0.25 tolerated(0.37) benign(0.115) TCGA-LG-A9QD-01 11 46817191 46817191 T C CKAP5 Missense_Mutation p.I535V 0.25 tolerated(0.42) benign(0) TCGA-LG-A9QD-01 11 4929013 4929013 C A OR51A7 Missense_Mutation p.S138R 0.35 tolerated(0.36) benign(0.056) TCGA-LG-A9QD-01 11 55872871 55872871 T A OR8H2 Missense_Mutation p.M118K 0.28 deleterious(0) possibly_damaging(0.611) TCGA-LG-A9QD-01 11 93461979 93461979 T G KIAA1731 Missense_Mutation p.F2432V 0.35 tolerated(0.19) benign(0.047) TCGA-LG-A9QD-01 11 95564320 95564320 T G CEP57 Missense_Mutation p.L468R 0.27 tolerated(0.27) benign(0.07) TCGA-LG-A9QD-01 12 122657230 122657230 G A IL31 Missense_Mutation p.P75L 0.29 tolerated(0.51) benign(0.018) TCGA-LG-A9QD-01 12 125397157 125397157 G A UBC Silent p.T387T 0.23 TCGA-LG-A9QD-01 12 14927949 14927949 G T H2AFJ 3'UTR 0.26 TCGA-LG-A9QD-01 12 22677545 22677545 T G C2CD5 Missense_Mutation p.K154N 0.32 tolerated(0.51) benign(0.016) TCGA-LG-A9QD-01 12 56474108 56474108 G A ERBB3 Silent p.Q8Q 0.39 TCGA-LG-A9QD-01 12 7187943 7187943 T A C1R Missense_Mutation p.T619S 0.30 tolerated(0.06) benign(0.073) TCGA-LG-A9QD-01 12 7869825 7869825 A G DPPA3 3'UTR 0.19 TCGA-LG-A9QD-01 13 100634599 100634599 C T ZIC2 Missense_Mutation p.A94V 0.28 tolerated(0.53) unknown(0) TCGA-LG-A9QD-01 13 42733407 42733407 A G DGKH Missense_Mutation p.K210E 0.32 deleterious(0.02) possibly_damaging(0.888) TCGA-LG-A9QD-01 13 96600318 96600318 C T UGGT2 Silent p.P491P 0.23 TCGA-LG-A9QD-01 14 22102423 22102423 C T OR10G2 Silent p.L192L 0.27 TCGA-LG-A9QD-01 14 24760356 24760356 C G DHRS1 Missense_Mutation p.R265P 0.35 tolerated(0.13) benign(0.206) TCGA-LG-A9QD-01 14 60938440 60938440 T C C14orf39 Missense_Mutation p.Y114C 0.24 deleterious(0.04) probably_damaging(0.966) TCGA-LG-A9QD-01 14 81943498 81943498 T C SEL1L Missense_Mutation p.M735V 0.30 tolerated(0.2) benign(0.021) TCGA-LG-A9QD-01 14 91655488 91655496 AGATTGTTG - C14orf159 In_Frame_Del p.I391_E393del 0.10 TCGA-LG-A9QD-01 15 102190571 102190571 A G TM2D3 Intron 0.38 TCGA-LG-A9QD-01 15 27778000 27778000 C A GABRG3 Silent p.V459V 0.33 TCGA-LG-A9QD-01 15 41625027 41625027 C A NUSAP1 5'Flank 0.23 TCGA-LG-A9QD-01 15 42140612 42140612 A G SPTBN5 3'UTR 0.14 TCGA-LG-A9QD-01 15 42154463 42154463 T A SPTBN5 Missense_Mutation p.Q2471H 0.15 possibly_damaging(0.896) TCGA-LG-A9QD-01 15 42174259 42174259 C G SPTBN5 Missense_Mutation p.A778P 0.15 possibly_damaging(0.653) TCGA-LG-A9QD-01 15 49620725 49620725 G T GALK2 3'Flank 0.28 TCGA-LG-A9QD-01 15 63632640 63632640 C T CA12 Silent p.Q198Q 0.26 TCGA-LG-A9QD-01 15 74219803 74219803 C T LOXL1 Missense_Mutation p.P227S 0.16 tolerated(0.09) probably_damaging(0.986) TCGA-LG-A9QD-01 15 75130667 75130667 C A ULK3 Nonsense_Mutation p.E396* 0.25 TCGA-LG-A9QD-01 15 90773562 90773562 A G CIB1 3'UTR 0.06 TCGA-LG-A9QD-01 16 19083318 19083318 G A COQ7 Missense_Mutation p.A48T 0.24 tolerated(0.44) benign(0.002) TCGA-LG-A9QD-01 16 24788563 24788563 T C TNRC6A Missense_Mutation p.I158T 0.29 tolerated(0.18) probably_damaging(0.941) TCGA-LG-A9QD-01 16 30745076 30745076 C T SRCAP Missense_Mutation p.R2151C 0.30 probably_damaging(0.995) TCGA-LG-A9QD-01 16 422023 422023 G A TMEM8A Silent p.C760C 0.26 TCGA-LG-A9QD-01 16 422038 422038 G T TMEM8A Nonsense_Mutation p.C755* 0.28 TCGA-LG-A9QD-01 16 57731869 57731869 T C CCDC135 Missense_Mutation p.V3A 0.33 deleterious_low_confidence(0.01) unknown(0) TCGA-LG-A9QD-01 17 3664397 3664397 C T ITGAE Missense_Mutation p.D170N 0.39 tolerated(0.89) benign(0.001) TCGA-LG-A9QD-01 17 4448109 4448110 - GCCT MYBBP1A Frame_Shift_Ins p.R807Gfs*90 0.14 TCGA-LG-A9QD-01 17 68129150 68129150 C T KCNJ16 Missense_Mutation p.H308Y 0.21 tolerated(0.06) benign(0.019) TCGA-LG-A9QD-01 17 7487071 7487071 C T MPDU1 5'UTR 0.26 TCGA-LG-A9QD-01 18 31432918 31432918 C T NOL4 Missense_Mutation p.S602N 0.28 tolerated(0.24) benign(0.019) TCGA-LG-A9QD-01 18 43496496 43496496 C T EPG5 Silent p.Q1097Q 0.34 TCGA-LG-A9QD-01 18 43708145 43708145 A G HAUS1 3'UTR 0.27 TCGA-LG-A9QD-01 18 50278724 50278724 C G DCC Missense_Mutation p.T131R 0.26 deleterious(0) benign(0.179) TCGA-LG-A9QD-01 19 1036446 1036446 G A CNN2 Missense_Mutation p.G180D 0.31 deleterious(0.03) probably_damaging(0.983) TCGA-LG-A9QD-01 19 15064996 15064996 C A SLC1A6 Missense_Mutation p.A439S 0.25 deleterious(0) probably_damaging(0.992) TCGA-LG-A9QD-01 19 18288521 18288521 A - IFI30 Frame_Shift_Del p.K213Nfs*42 0.19 TCGA-LG-A9QD-01 19 24270141 24270141 T C ZNF254 Splice_Site p.X10_splice 0.08 TCGA-LG-A9QD-01 19 30505901 30505901 T G URI1 Silent p.V511V 0.26 TCGA-LG-A9QD-01 19 30936438 30936438 C A ZNF536 Missense_Mutation p.R657S 0.31 deleterious(0.01) benign(0.436) TCGA-LG-A9QD-01 19 33200280 33200280 A G NUDT19 Missense_Mutation p.M302V 0.35 tolerated(0.49) benign(0.002) TCGA-LG-A9QD-01 19 36042385 36042385 G T ATP4A Missense_Mutation p.T950K 0.06 deleterious(0) probably_damaging(0.999) TCGA-LG-A9QD-01 19 58258269 58258269 G C ZNF776 5'UTR 0.05 TCGA-LG-A9QD-01 19 7833877 7833877 G A CLEC4M 3'UTR 0.31 TCGA-LG-A9QD-01 1 142620848 142620848 G A RP11-417J8.6 RNA 0.14 TCGA-LG-A9QD-01 1 152636736 152636736 C G LCE2D Missense_Mutation p.S52C 0.26 tolerated_low_confidence(0.08) unknown(0) TCGA-LG-A9QD-01 1 153509857 153509857 T C S100A5 Missense_Mutation p.Q65R 0.23 tolerated(0.09) possibly_damaging(0.459) TCGA-LG-A9QD-01 1 155108813 155108813 A G SLC50A1 Missense_Mutation p.D40G 0.17 tolerated(0.2) benign(0.074) TCGA-LG-A9QD-01 1 157667305 157667305 G C FCRL3 Intron 0.36 TCGA-LG-A9QD-01 1 175046704 175046704 G A TNN Silent p.V50V 0.21 TCGA-LG-A9QD-01 1 17563875 17563875 C G PADI1 Silent p.P460P 0.29 TCGA-LG-A9QD-01 1 198725152 198725152 G T PTPRC Missense_Mutation p.V1255L 0.29 tolerated(0.13) benign(0.007) TCGA-LG-A9QD-01 1 207073658 207073658 A T IL24 Missense_Mutation p.T88S 0.26 tolerated(0.07) benign(0.29) TCGA-LG-A9QD-01 1 236900515 236900515 G T ACTN2 Splice_Site p.X292_splice 0.32 TCGA-LG-A9QD-01 1 247835685 247835685 A G OR13G1 Missense_Mutation p.V220A 0.23 tolerated(1) benign(0) TCGA-LG-A9QD-01 1 24859572 24859572 G A RCAN3 Splice_Site p.X124_splice 0.36 TCGA-LG-A9QD-01 1 42875774 42875774 C T RIMKLA Missense_Mutation p.R201W 0.05 deleterious(0) probably_damaging(0.999) TCGA-LG-A9QD-01 1 60521079 60521079 G A C1orf87 Nonsense_Mutation p.Q47* 0.29 TCGA-LG-A9QD-01 1 65305399 65305399 A G JAK1 Missense_Mutation p.L910P 0.22 deleterious(0) probably_damaging(0.996) TCGA-LG-A9QD-01 1 85510937 85510937 T C MCOLN3 Missense_Mutation p.D36G 0.31 deleterious(0) benign(0.049) TCGA-LG-A9QD-01 1 90180572 90180572 C T LRRC8C 3'UTR 0.25 TCGA-LG-A9QD-01 1 91985781 91985781 C T CDC7 Silent p.A425A 0.19 TCGA-LG-A9QD-01 20 2797440 2797440 A T TMEM239 Missense_Mutation p.T171S 0.17 tolerated_low_confidence(0.07) possibly_damaging(0.486) TCGA-LG-A9QD-01 20 308534 308534 G T SOX12 3'UTR 0.36 TCGA-LG-A9QD-01 20 36954702 36954702 C A BPI Silent p.I347I 0.33 TCGA-LG-A9QD-01 20 42355615 42355615 G T GTSF1L 5'UTR 0.06 TCGA-LG-A9QD-01 20 44531117 44531117 G T PLTP Missense_Mutation p.P357T 0.24 deleterious(0.01) benign(0.297) TCGA-LG-A9QD-01 20 4842648 4842648 T G SLC23A2 Missense_Mutation p.I524L 0.23 tolerated(0.39) probably_damaging(0.97) TCGA-LG-A9QD-01 20 57273748 57273748 G A NPEPL1 Silent p.A172A 0.24 TCGA-LG-A9QD-01 20 61525146 61525146 C T DIDO1 Missense_Mutation p.M991I 0.41 benign(0.003) TCGA-LG-A9QD-01 21 31986189 31986189 G A KRTAP6-1 Missense_Mutation p.T12I 0.29 unknown(0) TCGA-LG-A9QD-01 21 38997477 38997477 T C KCNJ6 Missense_Mutation p.N419S 0.24 tolerated_low_confidence(1) benign(0.002) TCGA-LG-A9QD-01 21 40794803 40794803 G A LCA5L Intron 0.27 TCGA-LG-A9QD-01 22 20114588 20114589 TA - RANBP1 3'UTR 0.19 TCGA-LG-A9QD-01 22 26164310 26164310 C A MYO18B Missense_Mutation p.P143T 0.28 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-LG-A9QD-01 22 38012994 38012994 A T GGA1 Missense_Mutation p.Q65L 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-LG-A9QD-01 22 50961535 50961535 G T NCAPH2 Missense_Mutation p.E540D 0.41 tolerated(0.4) benign(0.273) TCGA-LG-A9QD-01 2 122165165 122165165 G A CLASP1 Silent p.L851L 0.23 TCGA-LG-A9QD-01 2 122485067 122485067 G C NIFK 3'UTR 0.24 TCGA-LG-A9QD-01 2 179595433 179595433 C T TTN Missense_Mutation p.A5943T 0.04 TCGA-LG-A9QD-01 2 179634550 179634550 C T TTN Missense_Mutation p.E2920K 0.24 TCGA-LG-A9QD-01 2 190617705 190617705 C A OSGEPL1 Missense_Mutation p.V322F 0.25 deleterious(0) possibly_damaging(0.624) TCGA-LG-A9QD-01 2 204150447 204150447 G A CYP20A1 Silent p.E321E 0.23 TCGA-LG-A9QD-01 2 210558225 210558225 T C MAP2 Missense_Mutation p.L444P 0.30 tolerated_low_confidence(0.41) benign(0.004) TCGA-LG-A9QD-01 2 21229990 21230017 TCCAGGAATTTGAAAGGTCCTGGGGAGC GAG APOB Frame_Shift_Del p.E3241Dfs*17 0.18 TCGA-LG-A9QD-01 2 21230017 21230017 C - APOB Frame_Shift_Del p.E3241Dfs*25 0.14 TCGA-LG-A9QD-01 2 219513983 219513983 T G ZNF142 Missense_Mutation p.E216D 0.23 deleterious(0.04) benign(0.217) TCGA-LG-A9QD-01 2 220426656 220426656 G C OBSL1 Intron 0.04 TCGA-LG-A9QD-01 2 227942713 227942713 C T COL4A4 Silent p.G628G 0.33 TCGA-LG-A9QD-01 2 69623283 69623319 ATTAATCTTCAAGTTCCTCAGCATATTAATAATAAAA TTTAAT NFU1 3'UTR 0.15 TCGA-LG-A9QD-01 2 71351621 71351621 T C MCEE Silent p.T31T 0.17 TCGA-LG-A9QD-01 2 89103745 89103745 G A ANKRD36BP2 RNA 0.17 TCGA-LG-A9QD-01 2 97505268 97505268 C T ANKRD23 3'UTR 0.41 TCGA-LG-A9QD-01 3 111394161 111394161 G A PLCXD2 Silent p.G23G 0.21 TCGA-LG-A9QD-01 3 126726697 126726697 G A PLXNA1 Missense_Mutation p.V685M 0.16 tolerated(0.23) benign(0.031) TCGA-LG-A9QD-01 3 128976621 128976621 C T COPG1 Silent p.H263H 0.30 TCGA-LG-A9QD-01 3 149479222 149479222 A C ANKUB1 3'UTR 0.24 TCGA-LG-A9QD-01 3 21792484 21792484 C G ZNF385D 5'UTR 0.29 TCGA-LG-A9QD-01 3 41266137 41266137 C T CTNNB1 Missense_Mutation p.S45F 0.32 deleterious(0) probably_damaging(0.954) TCGA-LG-A9QD-01 3 52829637 52829637 G - ITIH3 Frame_Shift_Del 0.16 TCGA-LG-A9QD-01 3 9956184 9956184 G T IL17RE Intron 0.19 TCGA-LG-A9QD-01 4 148796299 148796299 A G ARHGAP10 Missense_Mutation p.K277R 0.28 deleterious(0) benign(0.086) TCGA-LG-A9QD-01 4 155529796 155529796 C - FGG Frame_Shift_Del p.D225Mfs*4 0.16 TCGA-LG-A9QD-01 4 175183929 175183929 T G FBXO8 Missense_Mutation p.E105D 0.22 tolerated(0.17) benign(0.045) TCGA-LG-A9QD-01 4 187088139 187088139 A G FAM149A Silent p.L394L 0.32 TCGA-LG-A9QD-01 4 30723752 30723752 C T PCDH7 Silent p.N236N 0.31 TCGA-LG-A9QD-01 4 419956 419956 G A ABCA11P RNA 0.22 TCGA-LG-A9QD-01 4 74282072 74282072 T G ALB Splice_Site p.X430_splice 0.29 TCGA-LG-A9QD-01 4 76840924 76840924 T C NAAA Intron 0.32 TCGA-LG-A9QD-01 5 140751548 140751548 G A PCDHGB3 Silent p.E529E 0.26 TCGA-LG-A9QD-01 5 159992837 159992837 G A ATP10B Missense_Mutation p.L1337F 0.19 deleterious(0.02) probably_damaging(0.98) TCGA-LG-A9QD-01 5 172196041 172196041 A G DUSP1 Silent p.T276T 0.08 TCGA-LG-A9QD-01 5 19473754 19473754 G A CDH18 Missense_Mutation p.R652W 0.05 deleterious(0) probably_damaging(0.938) TCGA-LG-A9QD-01 5 56777436 56777436 C T ACTBL2 Missense_Mutation p.G367S 0.21 deleterious_low_confidence(0.01) probably_damaging(0.977) TCGA-LG-A9QD-01 5 59284493 59284493 C T PDE4D Missense_Mutation p.G32R 0.29 deleterious_low_confidence(0.01) benign(0.059) TCGA-LG-A9QD-01 6 107390291 107390303 GGATCTTGCAAAA - BEND3 Frame_Shift_Del p.F698Pfs*131 0.22 TCGA-LG-A9QD-01 6 138202372 138202372 G T TNFAIP3 Silent p.R763R 0.28 TCGA-LG-A9QD-01 6 139238740 139238740 G C REPS1 Missense_Mutation p.S517C 0.24 deleterious(0) probably_damaging(0.999) TCGA-LG-A9QD-01 6 159421022 159421022 G - RSPH3 5'UTR 0.21 TCGA-LG-A9QD-01 6 34803088 34803088 G T UHRF1BP1 Silent p.V229V 0.05 TCGA-LG-A9QD-01 6 3751735 3751735 G A PXDC1 Missense_Mutation p.L11F 0.28 deleterious_low_confidence(0.01) benign(0.446) TCGA-LG-A9QD-01 6 75902065 75902065 G A COL12A1 Missense_Mutation p.P66L 0.23 probably_damaging(1) TCGA-LG-A9QD-01 6 82459733 82459733 C T FAM46A Silent p.L336L 0.28 TCGA-LG-A9QD-01 6 87943233 87943233 G T ZNF292 Missense_Mutation p.K243N 0.23 deleterious(0.01) possibly_damaging(0.71) TCGA-LG-A9QD-01 6 96662880 96662880 T C FUT9 3'UTR 0.04 TCGA-LG-A9QD-01 6 99849338 99849338 T C PNISR Missense_Mutation p.H499R 0.23 tolerated_low_confidence(0.62) benign(0.402) TCGA-LG-A9QD-01 7 12443479 12443479 G T VWDE 5'UTR 0.24 TCGA-LG-A9QD-01 7 12617696 12617696 G A SCIN Silent p.E69E 0.26 TCGA-LG-A9QD-01 7 131883359 131883359 T C PLXNA4 Missense_Mutation p.K875E 0.27 deleterious(0.03) benign(0.111) TCGA-LG-A9QD-01 7 151704964 151704964 G T GALNTL5 Nonsense_Mutation p.E321* 0.27 TCGA-LG-A9QD-01 7 151944994 151944994 G T KMT2C Missense_Mutation p.S842Y 0.07 probably_damaging(0.961) TCGA-LG-A9QD-01 7 86493623 86493623 G A GRM3 Silent p.T864T 0.22 TCGA-LG-A9QD-01 7 86509672 86509672 C T KIAA1324L 3'UTR 0.24 TCGA-LG-A9QD-01 7 94285435 94285435 C T SGCE 5'UTR 0.22 TCGA-LG-A9QD-01 7 98254391 98254391 C G NPTX2 Silent p.P267P 0.50 TCGA-LG-A9QD-01 8 100147862 100147862 G T VPS13B Silent p.T488T 0.62 TCGA-LG-A9QD-01 8 105264026 105264026 G T RIMS2 Missense_Mutation p.G1343V 0.58 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-LG-A9QD-01 8 108970401 108970401 G A RSPO2 Nonsense_Mutation p.Q175* 0.51 TCGA-LG-A9QD-01 8 33360968 33360968 A C TTI2 Missense_Mutation p.L413R 0.40 deleterious(0.04) possibly_damaging(0.775) TCGA-LG-A9QD-01 8 37756978 37756978 G A RAB11FIP1 5'Flank 0.34 TCGA-LG-A9QD-01 8 49987869 49987869 G A C8orf22 3'UTR 0.59 TCGA-LG-A9QD-01 8 66617100 66617100 T G MTFR1 Silent p.L151L 0.58 TCGA-LG-A9QD-01 8 70981937 70981937 G A PRDM14 Silent p.F53F 0.19 TCGA-LG-A9QD-01 8 99101725 99101725 T C C8orf47 Silent p.P160P 0.03 TCGA-LG-A9QD-01 9 129376817 129376817 T C LMX1B Missense_Mutation p.M30T 0.25 deleterious_low_confidence(0.02) benign(0.302) TCGA-LG-A9QD-01 9 27158096 27158096 G T TEK Missense_Mutation p.R107L 0.34 tolerated(0.28) benign(0.426) TCGA-LG-A9QD-01 9 35707195 35707195 G T TLN1 Missense_Mutation p.A1610D 0.19 deleterious(0) benign(0.287) TCGA-LG-A9QD-01 9 94486904 94486904 G A ROR2 Silent p.Y624Y 0.05 TCGA-LG-A9QD-01 X 130678861 130678861 T A OR13H1 Missense_Mutation p.F272I 0.54 tolerated(1) benign(0.048) TCGA-LG-A9QD-01 X 148564324 148564324 A G IDS Missense_Mutation p.Y325H 0.66 tolerated(0.21) benign(0.087) TCGA-LG-A9QD-01 X 47028882 47028882 G C RBM10 Missense_Mutation p.E62D 0.62 tolerated(0.26) probably_damaging(0.97) TCGA-LG-A9QD-01 X 69669569 69669569 A C DLG3 Missense_Mutation p.E188A 0.52 deleterious(0) possibly_damaging(0.691) TCGA-MI-A75C-01 10 127753560 127753560 G A ADAM12 Missense_Mutation p.A478V 0.52 deleterious(0.01) benign(0.367) TCGA-MI-A75C-01 10 134166502 134166502 C T LRRC27 Intron 0.49 TCGA-MI-A75C-01 10 48390301 48390301 T C RBP3 Missense_Mutation p.I193V 0.05 tolerated(1) benign(0.006) TCGA-MI-A75C-01 10 51040916 51040916 C A PARG Missense_Mutation p.E375D 0.29 tolerated(0.43) benign(0.155) TCGA-MI-A75C-01 10 71688713 71688713 G T COL13A1 Silent p.G470G 0.17 TCGA-MI-A75C-01 10 99400560 99400560 C T PI4K2A Missense_Mutation p.P21S 0.41 tolerated_low_confidence(0.12) benign(0.077) TCGA-MI-A75C-01 11 10527413 10527413 C T AMPD3 Silent p.I771I 0.39 TCGA-MI-A75C-01 11 117352790 117352790 C T DSCAML1 Missense_Mutation p.R876Q 0.34 tolerated(0.16) benign(0.024) TCGA-MI-A75C-01 11 118277703 118277703 A C ATP5L Missense_Mutation p.K35T 0.26 deleterious(0.02) benign(0.108) TCGA-MI-A75C-01 11 118769207 118769207 G T BCL9L Missense_Mutation p.P1473T 0.46 benign(0.22) TCGA-MI-A75C-01 11 46921486 46921486 C T LRP4 Missense_Mutation p.G120S 0.30 tolerated(0.06) possibly_damaging(0.68) TCGA-MI-A75C-01 11 55587642 55587642 C T OR5D18 Silent p.F179F 0.29 TCGA-MI-A75C-01 11 608998 608998 G T PHRF1 Missense_Mutation p.R1180L 0.43 deleterious(0.01) possibly_damaging(0.858) TCGA-MI-A75C-01 11 70049616 70049616 C T FADD Silent p.S17S 0.32 TCGA-MI-A75C-01 11 76506706 76506706 A G TSKU Missense_Mutation p.T16A 0.35 tolerated(0.47) benign(0.003) TCGA-MI-A75C-01 11 838245 838245 G A CD151 3'UTR 0.40 TCGA-MI-A75C-01 11 95712030 95712030 T A MAML2 3'UTR 0.38 TCGA-MI-A75C-01 12 112280434 112280434 G T MAPKAPK5 5'UTR 0.06 TCGA-MI-A75C-01 12 132610931 132610931 T C RP13-977J11.5 3'Flank 0.51 TCGA-MI-A75C-01 12 19436367 19436367 A G PLEKHA5 Silent p.T489T 0.53 TCGA-MI-A75C-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.46 deleterious(0) benign(0.361) TCGA-MI-A75C-01 12 46123902 46123902 T - ARID2 Frame_Shift_Del p.L57* 0.27 TCGA-MI-A75C-01 12 46246499 46246499 A - ARID2 Frame_Shift_Del p.N1532Ifs*3 0.30 TCGA-MI-A75C-01 12 54736037 54736037 G T COPZ1 Missense_Mutation p.E45D 0.33 deleterious(0) probably_damaging(0.992) TCGA-MI-A75C-01 12 56510512 56510512 G A RPL41 5'UTR 0.36 TCGA-MI-A75C-01 12 6703766 6703778 TCCACCTGTAGCA - CHD4 Frame_Shift_Del p.D720Efs*11 0.41 TCGA-MI-A75C-01 12 69140077 69140077 C A SLC35E3 5'UTR 0.57 TCGA-MI-A75C-01 12 70953301 70953301 C T PTPRB Silent p.E1512E 0.27 TCGA-MI-A75C-01 12 85677457 85677457 G A ALX1 Missense_Mutation p.E112K 0.34 tolerated(0.05) benign(0.025) TCGA-MI-A75C-01 12 93205145 93205145 A G EEA1 Silent p.H703H 0.59 TCGA-MI-A75C-01 13 111335421 111335421 A C CARS2 Missense_Mutation p.V211G 0.46 tolerated(0.3) benign(0.009) TCGA-MI-A75C-01 13 33110720 33110720 T C N4BP2L2 Intron 0.35 TCGA-MI-A75C-01 14 106174148 106174148 G C IGHA1 Missense_Mutation p.P214R 0.27 deleterious(0.02) possibly_damaging(0.5) TCGA-MI-A75C-01 14 24808429 24808429 G A RIPK3 Missense_Mutation p.P88L 0.45 tolerated(0.44) benign(0.033) TCGA-MI-A75C-01 14 52520800 52520800 A G NID2 Missense_Mutation p.L336S 0.05 tolerated(0.6) benign(0.003) TCGA-MI-A75C-01 14 55881125 55881125 G T TBPL2 Missense_Mutation p.P367H 0.41 deleterious(0.01) probably_damaging(0.92) TCGA-MI-A75C-01 14 68274609 68274609 G A ZFYVE26 Missense_Mutation p.A131V 0.42 tolerated(0.33) benign(0.023) TCGA-MI-A75C-01 14 76905705 76905705 G A ESRRB Silent p.S3S 0.43 TCGA-MI-A75C-01 14 91779756 91779756 C G CCDC88C Missense_Mutation p.D802H 0.36 deleterious(0.02) possibly_damaging(0.781) TCGA-MI-A75C-01 14 95078759 95078759 C T SERPINA3 5'UTR 0.22 TCGA-MI-A75C-01 14 95574719 95574719 T C DICER1 Missense_Mutation p.Y793C 0.30 deleterious(0.04) probably_damaging(0.994) TCGA-MI-A75C-01 14 96707560 96707560 G A BDKRB2 Missense_Mutation p.G299S 0.37 tolerated(0.5) benign(0.002) TCGA-MI-A75C-01 15 25222974 25222974 C A SNRPN Missense_Mutation p.A157E 0.35 tolerated(0.14) probably_damaging(0.983) TCGA-MI-A75C-01 15 42126967 42126967 C T JMJD7-PLA2G4B Silent p.L32L 0.35 TCGA-MI-A75C-01 15 44069356 44069356 A G ELL3 5'UTR 0.18 TCGA-MI-A75C-01 15 69560737 69560737 T C GLCE Silent p.D336D 0.38 TCGA-MI-A75C-01 15 73541427 73541427 C T NEO1 Missense_Mutation p.L545F 0.53 tolerated(0.09) benign(0.054) TCGA-MI-A75C-01 15 78894345 78894345 T A CHRNA3 Silent p.P213P 0.05 TCGA-MI-A75C-01 15 90335706 90335706 C T ANPEP Nonsense_Mutation p.W779* 0.34 TCGA-MI-A75C-01 15 90335708 90335708 A C ANPEP Missense_Mutation p.W779G 0.35 deleterious(0) probably_damaging(0.995) TCGA-MI-A75C-01 16 11859416 11859416 T A ZC3H7A Missense_Mutation p.N550Y 0.32 tolerated(0.81) benign(0.299) TCGA-MI-A75C-01 16 2158624 2158624 G C PKD1 Missense_Mutation p.Q2182E 0.36 possibly_damaging(0.9) TCGA-MI-A75C-01 16 3024301 3024301 C T PKMYT1 Missense_Mutation p.G366D 0.32 tolerated(0.28) benign(0.028) TCGA-MI-A75C-01 16 58545547 58545547 C T NDRG4 3'UTR 0.53 TCGA-MI-A75C-01 17 16216896 16216896 C A PIGL Missense_Mutation p.H154Q 0.40 deleterious(0) probably_damaging(1) TCGA-MI-A75C-01 17 30816801 30816801 A G CDK5R1 3'UTR 0.50 TCGA-MI-A75C-01 17 38976377 38976377 C G KRT10 Missense_Mutation p.S360T 0.39 tolerated(0.26) probably_damaging(0.964) TCGA-MI-A75C-01 17 48625506 48625506 C G SPATA20 Intron 0.40 TCGA-MI-A75C-01 17 60742016 60742016 C A MRC2 Missense_Mutation p.R76S 0.29 tolerated(0.08) benign(0.166) TCGA-MI-A75C-01 17 68129654 68129654 T C KCNJ16 3'UTR 0.32 TCGA-MI-A75C-01 17 73761055 73761055 T C GALK1 Missense_Mutation p.M55V 0.31 tolerated(0.08) benign(0.255) TCGA-MI-A75C-01 17 74271920 74271920 A C QRICH2 Missense_Mutation p.I1655S 0.31 deleterious(0) benign(0.005) TCGA-MI-A75C-01 17 76973243 76973243 G T LGALS3BP Missense_Mutation p.L11M 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-MI-A75C-01 17 79661868 79661868 G T HGS Missense_Mutation p.E320D 0.40 tolerated(0.1) probably_damaging(0.931) TCGA-MI-A75C-01 17 79661869 79661869 G C HGS Missense_Mutation p.D321H 0.41 deleterious(0) probably_damaging(0.994) TCGA-MI-A75C-01 18 18586398 18586398 T G ROCK1 Missense_Mutation p.D600A 0.40 deleterious(0.04) benign(0.14) TCGA-MI-A75C-01 18 34174853 34174853 C A FHOD3 Missense_Mutation p.T237K 0.38 tolerated(0.36) benign(0.253) TCGA-MI-A75C-01 18 65179142 65179142 C A DSEL Missense_Mutation p.D912Y 0.31 deleterious(0) probably_damaging(1) TCGA-MI-A75C-01 19 15569403 15569403 G T RASAL3 Silent p.A242A 0.58 TCGA-MI-A75C-01 19 35791107 35791107 T C MAG Missense_Mutation p.V257A 0.11 deleterious(0.03) benign(0.44) TCGA-MI-A75C-01 19 35832797 35832797 G C CD22 Missense_Mutation p.G655A 0.36 deleterious(0) probably_damaging(1) TCGA-MI-A75C-01 19 45381766 45381766 G A PVRL2 Intron 0.06 TCGA-MI-A75C-01 19 50321584 50321584 G A MED25 5'UTR 0.51 TCGA-MI-A75C-01 19 50832056 50832056 C - KCNC3 Frame_Shift_Del p.G95Afs*23 0.44 TCGA-MI-A75C-01 19 53612297 53612297 C G ZNF415 Missense_Mutation p.G334A 0.32 deleterious(0) probably_damaging(0.982) TCGA-MI-A75C-01 19 55378328 55378328 G A KIR3DL2 3'UTR 0.38 TCGA-MI-A75C-01 19 9084547 9084547 T G MUC16 Missense_Mutation p.N2423T 0.06 unknown(0) TCGA-MI-A75C-01 1 109812678 109812678 A G CELSR2 Missense_Mutation p.I2411V 0.36 deleterious(0.01) possibly_damaging(0.679) TCGA-MI-A75C-01 1 1148033 1148033 C A TNFRSF4 Missense_Mutation p.C141F 0.38 deleterious(0.03) probably_damaging(0.995) TCGA-MI-A75C-01 1 11591710 11591710 C T PTCHD2 Silent p.H1106H 0.32 TCGA-MI-A75C-01 1 146747921 146747921 G A CHD1L Silent p.Q513Q 0.34 TCGA-MI-A75C-01 1 152323836 152323836 C A FLG2 Silent p.G2142G 0.17 TCGA-MI-A75C-01 1 155891367 155891367 A C KIAA0907 Nonsense_Mutation p.Y355* 0.84 TCGA-MI-A75C-01 1 156376731 156376731 G A C1orf61 Intron 0.19 TCGA-MI-A75C-01 1 157069339 157069339 G T ETV3L 5'UTR 0.16 TCGA-MI-A75C-01 1 171178027 171178027 T A FMO2 Missense_Mutation p.S451T 0.21 tolerated(0.41) benign(0.174) TCGA-MI-A75C-01 1 200312363 200312363 A G LINC00862 RNA 0.42 TCGA-MI-A75C-01 1 22902830 22902830 G A EPHA8 Missense_Mutation p.A94T 0.42 deleterious(0) probably_damaging(0.999) TCGA-MI-A75C-01 1 247150556 247150556 A G ZNF695 Missense_Mutation p.S421P 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-MI-A75C-01 1 248263223 248263223 C T OR2L13 Silent p.A182A 0.44 TCGA-MI-A75C-01 1 248366590 248366590 T C OR2M3 Missense_Mutation p.I74T 0.18 tolerated(0.11) benign(0.031) TCGA-MI-A75C-01 1 27709145 27709145 C T CD164L2 Missense_Mutation p.R34Q 0.40 tolerated_low_confidence(0.1) benign(0.008) TCGA-MI-A75C-01 1 28595721 28595721 G A SESN2 Missense_Mutation p.G40S 0.29 tolerated(0.11) benign(0.045) TCGA-MI-A75C-01 1 52830265 52830265 C A CC2D1B Missense_Mutation p.G10C 0.33 deleterious(0) probably_damaging(0.94) TCGA-MI-A75C-01 1 71533380 71533380 T A ZRANB2 Intron 0.38 TCGA-MI-A75C-01 1 84662426 84662427 - TA PRKACB Splice_Site p.X229_splice 0.29 TCGA-MI-A75C-01 20 32199083 32199084 - CAATGACAT CBFA2T2 In_Frame_Ins p.N131_I133dup 0.12 TCGA-MI-A75C-01 20 3541522 3541522 T G ATRN Missense_Mutation p.Y473D 0.38 deleterious(0) probably_damaging(0.985) TCGA-MI-A75C-01 20 52198188 52198188 T C ZNF217 Missense_Mutation p.H393R 0.40 deleterious(0) probably_damaging(1) TCGA-MI-A75C-01 20 57766654 57766654 C T ZNF831 Nonsense_Mutation p.Q194* 0.32 TCGA-MI-A75C-01 20 62338416 62338416 T C ARFRP1 Missense_Mutation p.K10E 0.37 tolerated(0.23) benign(0.329) TCGA-MI-A75C-01 21 11038932 11038932 T A BAGE2 RNA 0.09 TCGA-MI-A75C-01 21 35477277 35477277 A G SLC5A3 3'UTR 0.39 TCGA-MI-A75C-01 22 23063130 23063130 T G IGLV3-19 5'UTR 0.23 TCGA-MI-A75C-01 22 24583365 24583365 G T SUSD2 Missense_Mutation p.R613L 0.07 tolerated(0.27) benign(0.03) TCGA-MI-A75C-01 22 51014481 51014481 T C CPT1B Missense_Mutation p.S254G 0.41 deleterious(0) possibly_damaging(0.855) TCGA-MI-A75C-01 22 51183204 51183204 T C ACR Missense_Mutation p.W279R 0.39 tolerated(0.07) probably_damaging(0.998) TCGA-MI-A75C-01 2 100046405 100046405 T C REV1 Missense_Mutation p.I482V 0.37 tolerated(0.38) benign(0.005) TCGA-MI-A75C-01 2 1459934 1459934 G A TPO Nonsense_Mutation p.W233* 0.30 TCGA-MI-A75C-01 2 168102933 168102933 C T XIRP2 Silent p.I1677I 0.19 TCGA-MI-A75C-01 2 196866480 196866480 A T DNAH7 Silent p.A364A 0.37 TCGA-MI-A75C-01 2 202254174 202254174 C T TRAK2 Missense_Mutation p.G416S 0.21 tolerated(0.78) benign(0.044) TCGA-MI-A75C-01 2 208632778 208632778 G T FZD5 Missense_Mutation p.A229D 0.45 tolerated(0.25) benign(0.102) TCGA-MI-A75C-01 2 225266002 225266002 T A FAM124B Nonsense_Mutation p.R162* 0.37 TCGA-MI-A75C-01 2 234442150 234442150 T C USP40 Silent p.K493K 0.24 TCGA-MI-A75C-01 2 27715171 27715171 A T FNDC4 3'UTR 0.44 TCGA-MI-A75C-01 2 27715183 27715183 A G FNDC4 3'UTR 0.43 TCGA-MI-A75C-01 2 29222109 29222109 G T FAM179A Nonsense_Mutation p.G68* 0.27 TCGA-MI-A75C-01 2 29295459 29295459 C A C2orf71 Missense_Mutation p.V557L 0.33 tolerated(0.22) benign(0.017) TCGA-MI-A75C-01 2 55844336 55844336 G A SMEK2 Missense_Mutation p.S29F 0.34 deleterious(0.02) benign(0.08) TCGA-MI-A75C-01 2 90458641 90458641 A T CH17-132F21.1 Missense_Mutation p.Y106F 0.06 TCGA-MI-A75C-01 3 137893758 137893758 T G DBR1 5'UTR 0.53 TCGA-MI-A75C-01 3 138666188 138666188 C A C3orf72 5'UTR 0.35 TCGA-MI-A75C-01 3 191861739 191861739 T A FGF12 3'UTR 0.35 TCGA-MI-A75C-01 3 195975135 195975135 C A PCYT1A Missense_Mutation p.A93S 0.41 deleterious(0.02) probably_damaging(0.992) TCGA-MI-A75C-01 3 41268766 41268766 A T CTNNB1 Missense_Mutation p.K335I 0.39 deleterious(0) probably_damaging(0.957) TCGA-MI-A75C-01 3 75472165 75472165 G C FAM86DP RNA 0.03 TCGA-MI-A75C-01 3 9101941 9101941 T G SRGAP3 Missense_Mutation p.I259L 0.40 tolerated(0.57) probably_damaging(0.926) TCGA-MI-A75C-01 4 152550986 152550986 G A FAM160A1 Missense_Mutation p.D371N 0.26 deleterious(0.01) probably_damaging(1) TCGA-MI-A75C-01 4 154709533 154709533 C A SFRP2 Missense_Mutation p.C152F 0.43 deleterious(0) probably_damaging(0.998) TCGA-MI-A75C-01 4 184931082 184931082 G A STOX2 Missense_Mutation p.R364Q 0.42 deleterious(0.03) probably_damaging(0.998) TCGA-MI-A75C-01 4 3415912 3415912 T A RGS12 Missense_Mutation p.W712R 0.30 deleterious(0) probably_damaging(1) TCGA-MI-A75C-01 4 59395 59395 C T ZNF595 Nonsense_Mutation p.Q26* 0.05 TCGA-MI-A75C-01 4 91389492 91389492 G A CCSER1 Missense_Mutation p.E571K 0.28 tolerated(0.19) possibly_damaging(0.795) TCGA-MI-A75C-01 5 111598279 111598279 C T EPB41L4A Splice_Site p.X185_splice 0.32 TCGA-MI-A75C-01 5 127466833 127466833 G T SLC12A2 Missense_Mutation p.A375S 0.39 deleterious(0) possibly_damaging(0.84) TCGA-MI-A75C-01 5 133945276 133945276 T A SAR1B Silent p.S111S 0.37 TCGA-MI-A75C-01 5 150441768 150441768 C A TNIP1 Missense_Mutation p.D93Y 0.49 deleterious(0.01) possibly_damaging(0.718) TCGA-MI-A75C-01 5 157053726 157053726 T C SOX30 Silent p.T628T 0.36 TCGA-MI-A75C-01 5 161113294 161113294 A G GABRA6 Missense_Mutation p.S33G 0.36 deleterious(0) possibly_damaging(0.565) TCGA-MI-A75C-01 5 176056854 176056854 G A SNCB 5'UTR 0.65 TCGA-MI-A75C-01 5 82816091 82816091 T C VCAN Missense_Mutation p.F656L 0.31 tolerated(0.27) benign(0.012) TCGA-MI-A75C-01 6 12120854 12120854 G T HIVEP1 Missense_Mutation p.A276S 0.40 tolerated(0.59) benign(0.005) TCGA-MI-A75C-01 6 152757118 152757118 A T SYNE1 Missense_Mutation p.I1423N 0.38 possibly_damaging(0.649) TCGA-MI-A75C-01 6 155498070 155498070 C T TIAM2 Missense_Mutation p.P828S 0.39 tolerated(0.06) benign(0.032) TCGA-MI-A75C-01 6 21598625 21598625 G T SOX4 3'UTR 0.42 TCGA-MI-A75C-01 6 27799306 27799306 G A HIST1H4K 5'Flank 0.37 TCGA-MI-A75C-01 6 30681730 30681731 AG - MDC1 Frame_Shift_Del p.F123Cfs*2 0.26 TCGA-MI-A75C-01 6 42858426 42858426 A G C6orf226 Missense_Mutation p.L34P 0.36 deleterious_low_confidence(0) possibly_damaging(0.483) TCGA-MI-A75C-01 6 49399324 49399324 G T MUT 3'UTR 0.06 TCGA-MI-A75C-01 6 89827583 89827583 G A SRSF12 Silent p.P8P 0.44 TCGA-MI-A75C-01 7 102257057 102257057 C T RASA4 Intron 0.09 TCGA-MI-A75C-01 7 107580787 107580787 G A LAMB1 Silent p.P1136P 0.42 TCGA-MI-A75C-01 7 99273903 99273903 G A CYP3A5 Intron 0.40 TCGA-MI-A75C-01 8 113304861 113304861 G T CSMD3 Missense_Mutation p.T2898K 0.11 tolerated(0.98) possibly_damaging(0.542) TCGA-MI-A75C-01 8 128428177 128428199 ATGGGGGGCGGAGCCGGGCTGGG - POU5F1B Frame_Shift_Del p.W23* 0.13 TCGA-MI-A75C-01 8 143994269 143994269 A G CYP11B2 Missense_Mutation p.V385A 0.16 tolerated(0.38) benign(0.063) TCGA-MI-A75C-01 8 145660436 145660436 C G TONSL Missense_Mutation p.Q990H 0.21 tolerated(0.07) benign(0.037) TCGA-MI-A75C-01 8 26485436 26485436 G T DPYSL2 Missense_Mutation p.V224L 0.17 tolerated(0.41) benign(0.036) TCGA-MI-A75C-01 8 27099966 27099966 G A STMN4 Silent p.F19F 0.60 TCGA-MI-A75C-01 8 55533949 55533949 C T RP1 Silent p.P141P 0.23 TCGA-MI-A75C-01 8 76471204 76471204 A T HNF4G Missense_Mutation p.Q342L 0.14 deleterious(0.03) benign(0.205) TCGA-MI-A75C-01 9 107379836 107379836 G T OR13C9 Missense_Mutation p.S217Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-MI-A75C-01 9 108425042 108425042 G T TAL2 Missense_Mutation p.D89Y 0.46 deleterious(0.01) benign(0.224) TCGA-MI-A75C-01 9 118164433 118164433 G A DEC1 3'UTR 0.38 TCGA-MI-A75C-01 9 139371483 139371483 C A SEC16A Silent p.V195V 0.45 TCGA-MI-A75C-01 9 32543636 32543636 A G TOPORS Missense_Mutation p.L296S 0.26 deleterious(0) probably_damaging(0.999) TCGA-MI-A75C-01 9 4741156 4741156 G T AK3 5'UTR 0.50 TCGA-MI-A75C-01 9 71396648 71396648 A G FAM122A 3'UTR 0.40 TCGA-MI-A75C-01 9 74675473 74675473 G A C9orf57 5'UTR 0.32 TCGA-MI-A75C-01 9 75782426 75782426 A T ANXA1 Silent p.T272T 0.06 TCGA-MI-A75C-01 X 41002598 41002598 C G USP9X Missense_Mutation p.Q406E 0.73 deleterious(0) benign(0.009) TCGA-MI-A75C-01 X 51151038 51151038 T A CXorf67 Silent p.P390P 0.79 TCGA-MI-A75C-01 X 595367 595368 AA - SHOX Frame_Shift_Del p.K98Rfs*83 0.18 TCGA-MI-A75C-01 X 78427073 78427073 A G GPR174 Missense_Mutation p.E190G 0.09 deleterious(0) probably_damaging(0.993) TCGA-MI-A75E-01 10 26457744 26457744 C T MYO3A Missense_Mutation p.S1072L 0.15 deleterious(0.03) benign(0.002) TCGA-MI-A75E-01 10 27821473 27821473 C T RAB18 Missense_Mutation p.P75L 0.17 deleterious(0) possibly_damaging(0.895) TCGA-MI-A75E-01 10 48381913 48381913 G A RBP3 Missense_Mutation p.H1246Y 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-MI-A75E-01 10 5238811 5238811 A G AKR1C4 5'UTR 0.23 TCGA-MI-A75E-01 10 72520494 72520494 G T ADAMTS14 Missense_Mutation p.G1189V 0.17 deleterious_low_confidence(0.04) benign(0.157) TCGA-MI-A75E-01 10 73562794 73562794 A G CDH23 Missense_Mutation p.N301S 0.16 deleterious(0) possibly_damaging(0.868) TCGA-MI-A75E-01 10 75147452 75147452 C T ANXA7 Missense_Mutation p.G232S 0.17 deleterious(0) probably_damaging(0.966) TCGA-MI-A75E-01 11 114398621 114398621 G T NXPE1 Missense_Mutation p.S137Y 0.15 tolerated(0.09) benign(0.248) TCGA-MI-A75E-01 11 117869720 117869720 C T IL10RA Silent p.S367S 0.24 TCGA-MI-A75E-01 11 124489603 124489603 G C PANX3 Missense_Mutation p.K317N 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-MI-A75E-01 11 134014256 134014256 T C JAM3 Missense_Mutation p.I126T 0.11 deleterious(0.01) benign(0.315) TCGA-MI-A75E-01 11 17623774 17623774 T A OTOG Missense_Mutation p.Y1255N 0.31 probably_damaging(0.974) TCGA-MI-A75E-01 11 2429133 2429133 A T TRPM5 Missense_Mutation p.V931E 0.13 deleterious(0.02) possibly_damaging(0.809) TCGA-MI-A75E-01 11 4976204 4976204 C A OR51A2 Missense_Mutation p.C247F 0.04 tolerated(0.06) benign(0.429) TCGA-MI-A75E-01 11 82444433 82444433 G T FAM181B Silent p.P113P 0.20 TCGA-MI-A75E-01 11 88241917 88241917 A T GRM5 Missense_Mutation p.V1161E 0.09 tolerated_low_confidence(0.06) benign(0.05) TCGA-MI-A75E-01 11 92495075 92495075 G T FAT3 Silent p.V1241V 0.16 TCGA-MI-A75E-01 11 95546100 95546100 A G CEP57 Missense_Mutation p.I69M 0.14 deleterious(0) possibly_damaging(0.851) TCGA-MI-A75E-01 11 99715928 99715928 T C CNTN5 Missense_Mutation p.Y171H 0.07 deleterious(0) probably_damaging(1) TCGA-MI-A75E-01 12 21995268 21995268 T G ABCC9 Missense_Mutation p.K1151N 0.23 deleterious(0.01) benign(0.406) TCGA-MI-A75E-01 12 2794935 2794935 G A CACNA1C Silent p.L1917L 0.18 TCGA-MI-A75E-01 12 33592330 33592330 C - SYT10 Frame_Shift_Del p.G43Afs*15 0.22 TCGA-MI-A75E-01 12 48238472 48238472 C T VDR 3'UTR 0.17 TCGA-MI-A75E-01 12 48578689 48578689 A T C12orf68 3'UTR 0.30 TCGA-MI-A75E-01 12 4920262 4920262 T A KCNA6 Missense_Mutation p.I352N 0.09 deleterious(0) probably_damaging(0.999) TCGA-MI-A75E-01 12 56742763 56742763 A G STAT2 Silent p.Y507Y 0.12 TCGA-MI-A75E-01 12 68719226 68719226 T C MDM1 Missense_Mutation p.N210D 0.12 tolerated(0.36) benign(0.005) TCGA-MI-A75E-01 13 113978654 113978654 A C GRTP1 3'UTR 0.20 TCGA-MI-A75E-01 13 23911712 23911712 G T SACS Silent p.S2101S 0.19 TCGA-MI-A75E-01 13 25671982 25671982 C A PABPC3 Missense_Mutation p.P549H 0.22 deleterious(0.04) possibly_damaging(0.7) TCGA-MI-A75E-01 13 44433943 44433943 C T CCDC122 Silent p.G140G 0.12 TCGA-MI-A75E-01 13 77750664 77750664 C A MYCBP2 Nonsense_Mutation p.E1776* 0.15 TCGA-MI-A75E-01 13 78470552 78470552 A G EDNRB 3'UTR 0.11 TCGA-MI-A75E-01 14 24878595 24878595 A G NYNRIN Missense_Mutation p.Q532R 0.12 deleterious_low_confidence(0.01) benign(0.075) TCGA-MI-A75E-01 14 26949245 26949245 T C NOVA1 Missense_Mutation p.K129E 0.17 deleterious(0.01) unknown(0) TCGA-MI-A75E-01 14 50251848 50251848 T G NEMF Missense_Mutation p.K1012T 0.24 deleterious(0) probably_damaging(0.97) TCGA-MI-A75E-01 14 64628942 64628942 T C SYNE2 Missense_Mutation p.M5416T 0.20 benign(0.004) TCGA-MI-A75E-01 14 71444965 71444965 G A PCNX Silent p.E637E 0.12 TCGA-MI-A75E-01 14 73653618 73653618 A G PSEN1 Missense_Mutation p.I180V 0.18 deleterious(0.01) benign(0.403) TCGA-MI-A75E-01 14 79933569 79933569 G A NRXN3 Missense_Mutation p.A717T 0.13 tolerated(1) benign(0.024) TCGA-MI-A75E-01 14 89078231 89078231 T A ZC3H14 3'UTR 0.11 TCGA-MI-A75E-01 14 93963599 93963599 G T UNC79 Missense_Mutation p.A112S 0.21 tolerated(0.47) probably_damaging(0.997) TCGA-MI-A75E-01 14 94120287 94120287 T C UNC79 Silent p.D1928D 0.17 TCGA-MI-A75E-01 15 43888719 43888719 G A CKMT1B Missense_Mutation p.G289D 0.17 deleterious(0) probably_damaging(0.998) TCGA-MI-A75E-01 15 48058317 48058317 T G SEMA6D Silent p.S528S 0.20 TCGA-MI-A75E-01 15 66615033 66615052 GATGCCAGTAAACACACCAG - DIS3L Frame_Shift_Del p.M446Kfs*8 0.11 TCGA-MI-A75E-01 15 79585934 79585934 C A ANKRD34C Missense_Mutation p.S103Y 0.18 deleterious(0) probably_damaging(0.916) TCGA-MI-A75E-01 15 90767099 90767107 TCTGTGTCT - SEMA4B In_Frame_Del p.C359_F361del 0.15 TCGA-MI-A75E-01 16 27079776 27079776 A G C16orf82 RNA 0.26 TCGA-MI-A75E-01 16 31150725 31150725 G C PRSS36 Missense_Mutation p.P768A 0.18 tolerated(0.58) benign(0.4) TCGA-MI-A75E-01 16 46617445 46617445 G C SHCBP1 Missense_Mutation p.A559G 0.11 tolerated(0.17) benign(0.021) TCGA-MI-A75E-01 16 74256 74256 G A WASH4P 5'Flank 0.11 TCGA-MI-A75E-01 17 38638655 38638655 A G TNS4 Silent p.N505N 0.16 TCGA-MI-A75E-01 17 38911527 38911527 A G KRT25 5'UTR 0.12 TCGA-MI-A75E-01 17 59557329 59557329 A G TBX4 Missense_Mutation p.S264G 0.12 tolerated(0.4) probably_damaging(0.965) TCGA-MI-A75E-01 18 14763926 14763926 A C ANKRD30B Silent p.A354A 0.15 TCGA-MI-A75E-01 18 6955380 6955380 G A LAMA1 Missense_Mutation p.P2727S 0.12 tolerated(0.32) benign(0.024) TCGA-MI-A75E-01 18 77659126 77659126 C T KCNG2 Silent p.S237S 0.21 TCGA-MI-A75E-01 19 10742002 10742002 A G SLC44A2 Missense_Mutation p.S128G 0.13 tolerated(0.43) benign(0) TCGA-MI-A75E-01 19 11475082 11475082 C G DKFZP761J1410 Missense_Mutation p.P334A 0.38 tolerated_low_confidence(0.08) benign(0.348) TCGA-MI-A75E-01 19 15292445 15292445 A T NOTCH3 Missense_Mutation p.C912S 0.19 deleterious(0) probably_damaging(0.998) TCGA-MI-A75E-01 19 16212228 16212228 T G TPM4 3'UTR 0.18 TCGA-MI-A75E-01 19 16212236 16212236 G T TPM4 3'UTR 0.19 TCGA-MI-A75E-01 19 16265269 16265269 G C HSH2D 3'UTR 0.29 TCGA-MI-A75E-01 19 18092581 18092581 C A KCNN1 Missense_Mutation p.L188I 0.11 tolerated(0.27) benign(0.014) TCGA-MI-A75E-01 19 3496791 3496791 C T DOHH Missense_Mutation p.D8N 0.21 tolerated(0.37) benign(0.001) TCGA-MI-A75E-01 19 37413702 37413702 T A ZNF568 Missense_Mutation p.N10K 0.17 tolerated_low_confidence(0.48) benign(0) TCGA-MI-A75E-01 19 39660216 39660216 G A PAK4 Missense_Mutation p.R8Q 0.16 deleterious(0) probably_damaging(0.986) TCGA-MI-A75E-01 19 430742 430742 T C SHC2 Silent p.P372P 0.26 TCGA-MI-A75E-01 19 44932418 44932418 T C ZNF229 3'UTR 0.07 TCGA-MI-A75E-01 19 47425519 47425519 A T ARHGAP35 Missense_Mutation p.Q1196L 0.13 tolerated(0.25) benign(0.173) TCGA-MI-A75E-01 19 9929361 9929361 T C FBXL12 Intron 0.21 TCGA-MI-A75E-01 1 109340861 109340861 T C STXBP3 Splice_Site p.X483_splice 0.12 TCGA-MI-A75E-01 1 114184617 114184619 TCA - MAGI3 In_Frame_Del p.V482_N483delinsD 0.12 TCGA-MI-A75E-01 1 156287239 156287239 G A CCT3 Missense_Mutation p.P287S 0.09 deleterious(0) probably_damaging(0.988) TCGA-MI-A75E-01 1 156450690 156450690 G C MEF2D Missense_Mutation p.P111R 0.14 deleterious(0) possibly_damaging(0.529) TCGA-MI-A75E-01 1 158227685 158227685 C A CD1A 3'UTR 0.42 TCGA-MI-A75E-01 1 159802826 159802826 A G SLAMF8 Silent p.P176P 0.08 TCGA-MI-A75E-01 1 181741311 181741311 G A CACNA1E Missense_Mutation p.G1695S 0.15 deleterious(0) probably_damaging(0.961) TCGA-MI-A75E-01 1 182369506 182369506 G C TEDDM1 Missense_Mutation p.L39V 0.12 tolerated(0.26) benign(0.015) TCGA-MI-A75E-01 1 182872216 182872216 G A SHCBP1L Silent p.T556T 0.22 TCGA-MI-A75E-01 1 223983762 223983762 T A TP53BP2 Missense_Mutation p.S827C 0.13 deleterious(0.02) benign(0.401) TCGA-MI-A75E-01 1 232944495 232944495 A G MAP10 3'UTR 0.11 TCGA-MI-A75E-01 1 245849634 245849634 G A KIF26B Missense_Mutation p.E1117K 0.12 deleterious(0.01) unknown(0) TCGA-MI-A75E-01 1 247068901 247068901 G A AHCTF1 Missense_Mutation p.P284S 0.29 deleterious(0) probably_damaging(0.996) TCGA-MI-A75E-01 1 248458182 248458182 C T OR2T12 Silent p.K233K 0.15 TCGA-MI-A75E-01 1 35921730 35921730 T C KIAA0319L Missense_Mutation p.T514A 0.12 deleterious(0) possibly_damaging(0.904) TCGA-MI-A75E-01 1 78479141 78479141 A G DNAJB4 Silent p.K206K 0.06 TCGA-MI-A75E-01 1 89607248 89607248 A T GBP7 Silent p.A483A 0.11 TCGA-MI-A75E-01 1 93159906 93159906 G - EVI5 Frame_Shift_Del p.Q361Rfs*2 0.19 TCGA-MI-A75E-01 20 13830846 13830846 C A SEL1L2 Silent p.L533L 0.20 TCGA-MI-A75E-01 20 2730134 2730134 C A EBF4 Missense_Mutation p.R239S 0.16 deleterious(0) probably_damaging(0.967) TCGA-MI-A75E-01 20 34568392 34568392 T C CNBD2 Silent p.P85P 0.28 TCGA-MI-A75E-01 20 47864666 47864666 T C ZNFX1 Missense_Mutation p.Y1632C 0.25 deleterious(0) probably_damaging(0.999) TCGA-MI-A75E-01 20 52644852 52644852 C T BCAS1 Intron 0.10 TCGA-MI-A75E-01 20 57266852 57266852 A G NPEPL1 5'Flank 0.21 TCGA-MI-A75E-01 20 61880213 61880213 T C NKAIN4 Missense_Mutation p.N76S 0.19 deleterious(0.03) probably_damaging(0.969) TCGA-MI-A75E-01 21 27372447 27372447 G A APP Missense_Mutation p.R306C 0.19 deleterious(0) probably_damaging(0.987) TCGA-MI-A75E-01 22 29563180 29563180 A T KREMEN1 3'UTR 0.12 TCGA-MI-A75E-01 22 32754310 32754310 C T RFPL3 Silent p.V84V 0.16 TCGA-MI-A75E-01 22 38469082 38469082 G A PICK1 Missense_Mutation p.V256M 0.15 deleterious(0.01) probably_damaging(0.982) TCGA-MI-A75E-01 22 46658708 46658708 G C PKDREJ Missense_Mutation p.P171R 0.17 tolerated(0.11) benign(0.014) TCGA-MI-A75E-01 2 103120102 103120102 G A SLC9A4 Missense_Mutation p.V306I 0.16 tolerated(0.11) probably_damaging(0.999) TCGA-MI-A75E-01 2 105977827 105977827 A G FHL2 Silent p.C251C 0.12 TCGA-MI-A75E-01 2 131985863 131985863 A T POTEE Missense_Mutation p.S322C 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.902) TCGA-MI-A75E-01 2 16086394 16086394 G A MYCN 3'UTR 0.33 TCGA-MI-A75E-01 2 168107754 168107754 G T XIRP2 Silent p.V3284V 0.27 TCGA-MI-A75E-01 2 169727825 169727825 T A SPC25 3'UTR 0.12 TCGA-MI-A75E-01 2 182412568 182412568 T C CERKL Silent p.A406A 0.10 TCGA-MI-A75E-01 2 203417602 203417602 A G BMPR2 Missense_Mutation p.Q526R 0.07 tolerated(0.13) benign(0.4) TCGA-MI-A75E-01 2 203421181 203421181 G A BMPR2 Silent p.K931K 0.11 TCGA-MI-A75E-01 2 224903230 224903230 A C SERPINE2 5'UTR 0.15 TCGA-MI-A75E-01 2 233246210 233246210 G A ALPP Missense_Mutation p.S438N 0.19 tolerated(0.21) benign(0.001) TCGA-MI-A75E-01 2 55407735 55407735 A C CLHC1 Missense_Mutation p.L432R 0.18 tolerated(0.12) possibly_damaging(0.563) TCGA-MI-A75E-01 2 7027257 7027257 A G RSAD2 Missense_Mutation p.T234A 0.15 tolerated(0.38) benign(0.004) TCGA-MI-A75E-01 2 75897385 75897385 T G GCFC2 Missense_Mutation p.N661T 0.24 tolerated(0.07) possibly_damaging(0.622) TCGA-MI-A75E-01 2 80782957 80782957 C G CTNNA2 Missense_Mutation p.N560K 0.11 tolerated(0.05) probably_damaging(0.936) TCGA-MI-A75E-01 3 131253945 131253945 G A CPNE4 3'UTR 0.18 TCGA-MI-A75E-01 3 139258616 139258616 G A RBP1 5'UTR 0.25 TCGA-MI-A75E-01 3 159710887 159710887 C T IL12A Missense_Mutation p.A118V 0.18 deleterious(0) probably_damaging(0.956) TCGA-MI-A75E-01 3 176755936 176755936 C A TBL1XR1 Missense_Mutation p.D358Y 0.16 deleterious(0) probably_damaging(0.985) TCGA-MI-A75E-01 3 194371616 194371616 T C LSG1 Silent p.V471V 0.13 TCGA-MI-A75E-01 3 21462713 21462713 G A ZNF385D Missense_Mutation p.P394L 0.10 deleterious(0) probably_damaging(0.981) TCGA-MI-A75E-01 3 3131916 3131916 T C IL5RA Intron 0.19 TCGA-MI-A75E-01 3 48696462 48696462 G A CELSR3 Silent p.V1202V 0.18 TCGA-MI-A75E-01 3 58089691 58089691 C T FLNB Silent p.L497L 0.18 TCGA-MI-A75E-01 3 64133075 64133075 C A PRICKLE2 Missense_Mutation p.R364L 0.16 tolerated(0.2) possibly_damaging(0.815) TCGA-MI-A75E-01 3 64633684 64633684 C G ADAMTS9 Missense_Mutation p.G548R 0.19 tolerated(0.12) benign(0.049) TCGA-MI-A75E-01 3 69246073 69246073 T C FRMD4B Missense_Mutation p.Y357C 0.14 deleterious(0) probably_damaging(1) TCGA-MI-A75E-01 3 93592946 93592946 G A PROS1 3'UTR 0.14 TCGA-MI-A75E-01 4 128999091 128999091 C G LARP1B Missense_Mutation p.A64G 0.16 tolerated(0.12) benign(0.003) TCGA-MI-A75E-01 4 1803246 1803246 C T FGFR3 Missense_Mutation p.R200C 0.21 deleterious(0) probably_damaging(0.994) TCGA-MI-A75E-01 4 186998195 186998195 A G TLR3 Missense_Mutation p.N141S 0.17 deleterious(0.04) benign(0.005) TCGA-MI-A75E-01 4 3449280 3449280 G A HGFAC Missense_Mutation p.V473M 0.16 tolerated(0.15) probably_damaging(0.994) TCGA-MI-A75E-01 4 83372214 83372214 C A ENOPH1 Missense_Mutation p.L69M 0.19 tolerated(0.08) benign(0.093) TCGA-MI-A75E-01 5 108714881 108714881 G T PJA2 Missense_Mutation p.P103T 0.11 deleterious(0.02) benign(0.341) TCGA-MI-A75E-01 5 112179045 112179045 A T APC Missense_Mutation p.K2585I 0.12 possibly_damaging(0.905) TCGA-MI-A75E-01 5 115249176 115249176 T C AP3S1 Missense_Mutation p.S191P 0.06 deleterious_low_confidence(0.04) benign(0.002) TCGA-MI-A75E-01 5 1216776 1216776 C A SLC6A19 Missense_Mutation p.Q331K 0.14 tolerated(0.33) benign(0.014) TCGA-MI-A75E-01 5 122725745 122725748 AGTA - CEP120 Frame_Shift_Del p.T376Gfs*54 0.18 TCGA-MI-A75E-01 5 130778169 130778169 C A RAPGEF6 Missense_Mutation p.M1169I 0.18 tolerated_low_confidence(0.58) benign(0.003) TCGA-MI-A75E-01 5 131409482 131409482 A C CSF2 5'Flank 0.20 TCGA-MI-A75E-01 5 141248931 141248931 G A PCDH1 Missense_Mutation p.R36W 0.16 deleterious_low_confidence(0.01) benign(0.266) TCGA-MI-A75E-01 5 147481371 147481371 A T SPINK5 Missense_Mutation p.R444W 0.09 tolerated(0.11) benign(0.067) TCGA-MI-A75E-01 5 150175051 150175051 A G SMIM3 Missense_Mutation p.I17V 0.11 tolerated_low_confidence(0.23) benign(0.01) TCGA-MI-A75E-01 5 156375492 156375492 A T TIMD4 Missense_Mutation p.L260H 0.15 tolerated(0.16) benign(0.082) TCGA-MI-A75E-01 5 175525512 175525512 C A FAM153B Missense_Mutation p.A86E 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.765) TCGA-MI-A75E-01 5 32074465 32074465 C T PDZD2 Missense_Mutation p.P1085S 0.16 deleterious(0) probably_damaging(1) TCGA-MI-A75E-01 5 80376525 80376525 G A RASGRF2 Missense_Mutation p.D360N 0.14 tolerated(0.21) probably_damaging(0.982) TCGA-MI-A75E-01 5 82649043 82649043 C T XRCC4 Silent p.D331D 0.22 TCGA-MI-A75E-01 6 106634468 106634468 T G ATG5 Missense_Mutation p.S259R 0.27 deleterious(0) probably_damaging(0.984) TCGA-MI-A75E-01 6 106634473 106634473 T C ATG5 Missense_Mutation p.H257R 0.29 deleterious(0) probably_damaging(1) TCGA-MI-A75E-01 6 111670435 111670435 T C REV3L Missense_Mutation p.I2469V 0.18 tolerated(0.45) benign(0.05) TCGA-MI-A75E-01 6 149777857 149777857 C A ZC3H12D Nonsense_Mutation p.E209* 0.19 TCGA-MI-A75E-01 6 170116083 170116083 G A PHF10 Nonsense_Mutation p.Q171* 0.17 TCGA-MI-A75E-01 6 26056228 26056228 G A HIST1H1C Silent p.G143G 0.19 TCGA-MI-A75E-01 6 26056229 26056229 C A HIST1H1C Missense_Mutation p.G143V 0.19 deleterious(0.04) unknown(0) TCGA-MI-A75E-01 6 27778311 27778311 C T HIST1H3H 3'UTR 0.12 TCGA-MI-A75E-01 6 38775436 38775436 T A DNAH8 Silent p.L850L 0.23 TCGA-MI-A75E-01 6 41903591 41903591 A T CCND3 3'UTR 0.24 TCGA-MI-A75E-01 6 57393173 57393173 C G PRIM2 Missense_Mutation p.Q275E 0.06 tolerated(0.08) possibly_damaging(0.476) TCGA-MI-A75E-01 7 100683668 100683668 A T MUC17 Missense_Mutation p.S2991C 0.16 probably_damaging(0.991) TCGA-MI-A75E-01 7 100695190 100695191 - A MUC17 Frame_Shift_Ins p.N4352Efs*3 0.12 TCGA-MI-A75E-01 7 107616134 107616134 G A LAMB1 Nonsense_Mutation p.R397* 0.17 TCGA-MI-A75E-01 7 117385885 117385885 C A CTTNBP2 Missense_Mutation p.A1179S 0.10 deleterious(0.01) possibly_damaging(0.73) TCGA-MI-A75E-01 7 127255566 127255566 C A PAX4 Missense_Mutation p.Q3H 0.23 deleterious(0) probably_damaging(0.997) TCGA-MI-A75E-01 7 128502911 128502911 T G ATP6V1F 5'Flank 0.30 TCGA-MI-A75E-01 7 128505594 128505594 A T ATP6V1F Missense_Mutation p.R136W 0.13 deleterious(0) probably_damaging(1) TCGA-MI-A75E-01 7 149521651 149521651 A T SSPO RNA 0.15 TCGA-MI-A75E-01 7 150555959 150555959 C T AOC1 Missense_Mutation p.S560F 0.14 deleterious(0.05) benign(0.09) TCGA-MI-A75E-01 7 15405237 15405237 C - AGMO Frame_Shift_Del p.A389Qfs*10 0.17 TCGA-MI-A75E-01 7 157208729 157208729 G A DNAJB6 Silent p.K306K 0.15 TCGA-MI-A75E-01 7 20685483 20685483 C A ABCB5 Silent p.A261A 0.12 TCGA-MI-A75E-01 7 3998620 3998620 C T SDK1 Missense_Mutation p.T403I 0.15 tolerated(0.19) benign(0.015) TCGA-MI-A75E-01 7 42005488 42005488 G A GLI3 Silent p.H1061H 0.09 TCGA-MI-A75E-01 7 64863556 64863556 A G ZNF92 Missense_Mutation p.N177D 0.21 deleterious(0.01) benign(0.028) TCGA-MI-A75E-01 8 27321444 27321444 G A CHRNA2 Silent p.H172H 0.14 TCGA-MI-A75E-01 8 48701735 48701735 A G PRKDC Missense_Mutation p.S3578P 0.14 probably_damaging(0.937) TCGA-MI-A75E-01 8 56675089 56675089 T C TMEM68 Intron 0.15 TCGA-MI-A75E-01 8 59536325 59536325 A G NSMAF Silent p.Y164Y 0.28 TCGA-MI-A75E-01 8 92114976 92114976 G A LRRC69 Missense_Mutation p.M29I 0.23 tolerated(0.32) benign(0.002) TCGA-MI-A75E-01 9 117666181 117666181 G A TNFSF8 3'UTR 0.13 TCGA-MI-A75E-01 9 118997442 118997442 G T PAPPA Missense_Mutation p.C753F 0.21 deleterious(0) benign(0.308) TCGA-MI-A75E-01 9 130271257 130271257 C T FAM129B Missense_Mutation p.E439K 0.08 deleterious(0.03) possibly_damaging(0.474) TCGA-MI-A75E-01 9 99522338 99522338 T C ZNF510 Silent p.K258K 0.21 TCGA-MI-A75E-01 X 102564412 102564412 C T BEX2 3'UTR 0.43 TCGA-MI-A75E-01 X 106486408 106486408 G C PIH1D3 Missense_Mutation p.L175F 0.26 tolerated(0.21) benign(0.208) TCGA-MI-A75E-01 X 20213220 20213224 TACCA - RPS6KA3 Frame_Shift_Del p.L122* 0.15 TCGA-MI-A75E-01 X 54472435 54472435 A C FGD1 3'UTR 0.31 TCGA-MI-A75E-01 X 72433658 72433658 A G NAP1L2 Missense_Mutation p.I224T 0.13 tolerated(0.67) benign(0.001) TCGA-MI-A75G-01 10 100011440 100011440 T A LOXL4 Silent p.A657A 0.12 TCGA-MI-A75G-01 10 104899213 104899213 G C NT5C2 Missense_Mutation p.A42G 0.10 tolerated(0.44) benign(0.015) TCGA-MI-A75G-01 10 124090748 124090748 A T BTBD16 Missense_Mutation p.Q354L 0.19 tolerated(0.12) benign(0.039) TCGA-MI-A75G-01 10 17157488 17157488 C T CUBN Missense_Mutation p.M234I 0.45 tolerated(0.19) benign(0) TCGA-MI-A75G-01 10 25464991 25464991 C T GPR158 Silent p.A214A 0.50 TCGA-MI-A75G-01 10 50374902 50374902 C A C10orf128 Intron 0.28 TCGA-MI-A75G-01 10 50374903 50374903 A C C10orf128 Intron 0.28 TCGA-MI-A75G-01 10 72289050 72289050 G T PALD1 Missense_Mutation p.R84L 0.35 deleterious(0) probably_damaging(0.997) TCGA-MI-A75G-01 10 81050778 81050778 G A ZMIZ1 Silent p.A201A 0.42 TCGA-MI-A75G-01 10 94450055 94450055 G T HHEX Silent p.P104P 0.13 TCGA-MI-A75G-01 10 96006140 96006140 T C PLCE1 Missense_Mutation p.I953T 0.44 deleterious(0.04) benign(0.131) TCGA-MI-A75G-01 11 1017897 1017897 G T MUC6 Missense_Mutation p.T1635N 0.12 unknown(0) TCGA-MI-A75G-01 11 102984322 102984322 A G DYNC2H1 Silent p.E84E 0.04 TCGA-MI-A75G-01 11 103908253 103908253 C A DDI1 Missense_Mutation p.P235T 0.56 deleterious(0) probably_damaging(1) TCGA-MI-A75G-01 11 107833130 107833130 G C RAB39A 3'UTR 0.52 TCGA-MI-A75G-01 11 1097846 1097847 - C MUC2 Frame_Shift_Ins p.G2315Rfs*4 0.37 TCGA-MI-A75G-01 11 112014513 112014513 C T IL18 Missense_Mutation p.D130N 0.55 tolerated(0.1) benign(0.067) TCGA-MI-A75G-01 11 114271008 114271008 T A C11orf71 Missense_Mutation p.R16W 0.39 tolerated_low_confidence(0.1) possibly_damaging(0.87) TCGA-MI-A75G-01 11 118922612 118922612 T A HYOU1 Silent p.A419A 0.32 TCGA-MI-A75G-01 11 120355935 120355935 C G ARHGEF12 3'UTR 0.45 TCGA-MI-A75G-01 11 1248993 1248993 C A MUC5B Silent p.A252A 0.27 TCGA-MI-A75G-01 11 134244990 134244990 T C GLB1L2 3'UTR 0.50 TCGA-MI-A75G-01 11 1464728 1464728 C T BRSK2 Missense_Mutation p.P261S 0.43 deleterious(0) possibly_damaging(0.753) TCGA-MI-A75G-01 11 17618537 17618537 G A OTOG Missense_Mutation p.R1234Q 0.50 possibly_damaging(0.668) TCGA-MI-A75G-01 11 36511424 36511424 C T TRAF6 Silent p.E511E 0.31 TCGA-MI-A75G-01 11 55322576 55322576 C G OR4C15 Missense_Mutation p.S265C 0.13 tolerated_low_confidence(0.09) possibly_damaging(0.891) TCGA-MI-A75G-01 11 72414044 72414044 G T ARAP1 Missense_Mutation p.F691L 0.16 tolerated(0.53) benign(0.343) TCGA-MI-A75G-01 11 99715953 99715953 T A CNTN5 Missense_Mutation p.V179E 0.26 deleterious(0.01) benign(0.078) TCGA-MI-A75G-01 12 101750830 101750830 A C UTP20 Missense_Mutation p.E1887D 0.14 deleterious(0.01) probably_damaging(0.925) TCGA-MI-A75G-01 12 104136187 104136187 C T STAB2 Silent p.C1962C 0.41 TCGA-MI-A75G-01 12 112910827 112910827 A G PTPN11 Missense_Mutation p.Y279C 0.43 deleterious(0) benign(0.213) TCGA-MI-A75G-01 12 120594723 120594723 C T GCN1L1 Missense_Mutation p.R1054H 0.34 benign(0.256) TCGA-MI-A75G-01 12 48866816 48866816 C T ANP32D Silent p.C123C 0.36 TCGA-MI-A75G-01 12 51864175 51864175 G T SLC4A8 Splice_Site p.X509_splice 0.38 TCGA-MI-A75G-01 12 52715018 52715018 G C KRT83 Silent p.A34A 0.24 TCGA-MI-A75G-01 12 52715019 52715019 G T KRT83 Missense_Mutation p.A34D 0.25 deleterious(0) possibly_damaging(0.873) TCGA-MI-A75G-01 12 54963367 54963367 T C PDE1B Missense_Mutation p.Y150H 0.43 deleterious(0.01) possibly_damaging(0.504) TCGA-MI-A75G-01 12 55040905 55040905 G T DCD Missense_Mutation p.P33T 0.17 tolerated_low_confidence(0.52) possibly_damaging(0.884) TCGA-MI-A75G-01 12 56486836 56486836 C T ERBB3 Missense_Mutation p.T417I 0.15 tolerated(0.26) possibly_damaging(0.902) TCGA-MI-A75G-01 12 56486845 56486845 G T ERBB3 Missense_Mutation p.G420V 0.15 deleterious(0) probably_damaging(1) TCGA-MI-A75G-01 12 57552232 57552232 A G LRP1 Missense_Mutation p.I537V 0.29 benign(0.004) TCGA-MI-A75G-01 12 57884114 57884114 G T MARS Missense_Mutation p.Q205H 0.18 tolerated(0.53) benign(0.008) TCGA-MI-A75G-01 12 6602118 6602118 T C MRPL51 Missense_Mutation p.I34V 0.40 tolerated(1) benign(0.001) TCGA-MI-A75G-01 12 80762078 80762078 G C OTOGL Missense_Mutation p.V2193L 0.27 tolerated(0.3) benign(0.108) TCGA-MI-A75G-01 12 92818352 92818352 A G CLLU1 5'UTR 0.54 TCGA-MI-A75G-01 13 114201642 114201644 CGT AA TMCO3 Frame_Shift_Del p.A573Efs*16 0.24 TCGA-MI-A75G-01 13 23905055 23905055 A G SACS Silent p.L4320L 0.44 TCGA-MI-A75G-01 13 23905368 23905368 T C SACS Missense_Mutation p.D4216G 0.41 benign(0.036) TCGA-MI-A75G-01 13 39588511 39588511 T C PROSER1 Missense_Mutation p.N293S 0.43 tolerated_low_confidence(0.67) benign(0.006) TCGA-MI-A75G-01 13 52718081 52718081 T C NEK3 Silent p.K282K 0.27 TCGA-MI-A75G-01 13 67800963 67800963 C T PCDH9 Missense_Mutation p.R537Q 0.39 deleterious(0.05) probably_damaging(0.936) TCGA-MI-A75G-01 14 104205095 104205095 C T PPP1R13B Missense_Mutation p.V929I 0.22 deleterious(0) possibly_damaging(0.589) TCGA-MI-A75G-01 14 105417167 105417167 G T AHNAK2 Missense_Mutation p.L1541M 0.07 probably_damaging(0.974) TCGA-MI-A75G-01 14 20585602 20585602 A T OR4K17 Missense_Mutation p.S13C 0.51 deleterious_low_confidence(0) possibly_damaging(0.452) TCGA-MI-A75G-01 14 21770659 21770659 G A RPGRIP1 Missense_Mutation p.R168K 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-MI-A75G-01 14 21991101 21991101 G T SALL2 Missense_Mutation p.P921T 0.33 deleterious(0.01) benign(0.069) TCGA-MI-A75G-01 14 24572377 24572377 C T PCK2 Silent p.L461L 0.10 TCGA-MI-A75G-01 14 26949267 26949267 T G NOVA1 Silent p.R121R 0.34 TCGA-MI-A75G-01 14 73686062 73686062 A C PSEN1 3'UTR 0.39 TCGA-MI-A75G-01 14 96781503 96781503 G A ATG2B Silent p.S1210S 0.13 TCGA-MI-A75G-01 15 23890418 23890418 G A MAGEL2 Silent p.P221P 0.27 TCGA-MI-A75G-01 15 27271951 27271951 G T GABRG3 Missense_Mutation p.V85L 0.33 tolerated(0.24) benign(0.123) TCGA-MI-A75G-01 15 28422626 28422626 C A HERC2 Missense_Mutation p.D3065Y 0.27 probably_damaging(1) TCGA-MI-A75G-01 15 40998470 40998470 A T RAD51 Intron 0.31 TCGA-MI-A75G-01 15 43502619 43502619 C A EPB42 Missense_Mutation p.D220Y 0.17 deleterious(0) probably_damaging(0.997) TCGA-MI-A75G-01 15 48493817 48493817 G T CTXN2 3'UTR 0.05 TCGA-MI-A75G-01 15 55651833 55651833 T A CCPG1 Missense_Mutation p.E713V 0.10 deleterious(0) probably_damaging(0.971) TCGA-MI-A75G-01 15 62362560 62362560 T C C2CD4A 3'UTR 0.26 TCGA-MI-A75G-01 15 65917213 65917213 A T SLC24A1 Missense_Mutation p.E265D 0.31 benign(0.018) TCGA-MI-A75G-01 15 65994116 65994116 T C DENND4A Missense_Mutation p.Y848C 0.03 deleterious(0.01) probably_damaging(0.94) TCGA-MI-A75G-01 15 66031083 66031083 T C DENND4A Silent p.V254V 0.29 TCGA-MI-A75G-01 15 66621720 66621720 A G DIS3L Missense_Mutation p.I840V 0.11 deleterious(0.02) benign(0.223) TCGA-MI-A75G-01 15 71175115 71175115 G - THAP10 Frame_Shift_Del p.R188Vfs*11 0.24 TCGA-MI-A75G-01 15 91450650 91450650 G T MAN2A2 Missense_Mutation p.R374L 0.39 deleterious(0) probably_damaging(1) TCGA-MI-A75G-01 15 96875737 96875737 C A NR2F2 Missense_Mutation p.R135S 0.26 deleterious(0) probably_damaging(1) TCGA-MI-A75G-01 16 24583179 24583180 - T RBBP6 Frame_Shift_Ins p.E1599* 0.15 TCGA-MI-A75G-01 16 27374563 27374563 G T IL4R Silent p.G630G 0.22 TCGA-MI-A75G-01 16 3860606 3860606 T A CREBBP Missense_Mutation p.M325L 0.39 benign(0.235) TCGA-MI-A75G-01 16 4606659 4606659 C T C16orf96 Nonsense_Mutation p.Q57* 0.28 TCGA-MI-A75G-01 16 48130827 48130827 C A ABCC12 Intron 0.36 TCGA-MI-A75G-01 16 53296958 53296958 G A CHD9 Nonsense_Mutation p.W1423* 0.26 TCGA-MI-A75G-01 16 58585618 58585629 CCTGGGCCTGAG - CNOT1 In_Frame_Del p.A1022_Q1025del 0.31 TCGA-MI-A75G-01 16 72984387 72984387 G C ZFHX3 Missense_Mutation p.A1066G 0.41 benign(0.142) TCGA-MI-A75G-01 16 77323232 77323232 C T ADAMTS18 Missense_Mutation p.C1160Y 0.33 deleterious(0) probably_damaging(1) TCGA-MI-A75G-01 16 81078741 81078741 A G ATMIN 3'UTR 0.33 TCGA-MI-A75G-01 17 20407239 20407239 G T RP11-434D2.7 3'Flank 0.23 TCGA-MI-A75G-01 17 25972916 25972916 C T LGALS9 Silent p.S202S 0.57 TCGA-MI-A75G-01 17 32647344 32647344 A G CCL8 Missense_Mutation p.I45V 0.75 tolerated(0.54) benign(0.018) TCGA-MI-A75G-01 17 43101864 43101864 T C DCAKD Silent p.T211T 0.87 TCGA-MI-A75G-01 17 48734480 48734480 G T ABCC3 Missense_Mutation p.W141L 0.12 deleterious(0) benign(0.424) TCGA-MI-A75G-01 17 48734481 48734481 G T ABCC3 Missense_Mutation p.W141C 0.12 deleterious(0) probably_damaging(0.933) TCGA-MI-A75G-01 17 65144766 65144766 C T HELZ Missense_Mutation p.R847Q 0.65 deleterious(0.01) probably_damaging(0.999) TCGA-MI-A75G-01 17 73738729 73738729 T A ITGB4 Missense_Mutation p.I950N 0.16 deleterious(0) possibly_damaging(0.677) TCGA-MI-A75G-01 17 73738730 73738730 C G ITGB4 Missense_Mutation p.I950M 0.16 deleterious(0.01) benign(0.051) TCGA-MI-A75G-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.81 deleterious(0) probably_damaging(1) TCGA-MI-A75G-01 17 76046694 76046694 G A TNRC6C Silent p.V517V 0.56 TCGA-MI-A75G-01 17 78176245 78176245 C A CARD14 Intron 0.09 TCGA-MI-A75G-01 18 334785 334785 G A COLEC12 Silent p.P591P 0.20 TCGA-MI-A75G-01 18 40854347 40854347 G A SYT4 Missense_Mutation p.T16I 0.24 deleterious(0.04) benign(0.012) TCGA-MI-A75G-01 18 57103048 57103048 C G CCBE1 3'UTR 0.17 TCGA-MI-A75G-01 18 7888209 7888209 A T PTPRM Missense_Mutation p.Y101F 0.22 tolerated(0.13) benign(0.041) TCGA-MI-A75G-01 19 11137010 11137010 G T SMARCA4 Missense_Mutation p.G1068V 0.11 benign(0.342) TCGA-MI-A75G-01 19 14199510 14199510 C T SAMD1 Silent p.P371P 0.23 TCGA-MI-A75G-01 19 18321780 18321780 G C PDE4C Missense_Mutation p.P700A 0.41 tolerated_low_confidence(0.1) benign(0.001) TCGA-MI-A75G-01 19 19612809 19612809 G T GATAD2A Missense_Mutation p.R511L 0.16 tolerated(0.36) benign(0.004) TCGA-MI-A75G-01 19 22271140 22271141 TA - ZNF257 Frame_Shift_Del p.I196Mfs*8 0.33 TCGA-MI-A75G-01 19 23159202 23159202 T C ZNF728 Missense_Mutation p.K313E 0.50 deleterious(0.03) probably_damaging(0.94) TCGA-MI-A75G-01 19 291305 291305 T C PPAP2C 5'Flank 0.16 TCGA-MI-A75G-01 19 3285980 3285980 C A CELF5 Missense_Mutation p.S381R 0.18 deleterious(0.03) benign(0.002) TCGA-MI-A75G-01 19 35800910 35800919 GAGCGAGCGG - MAG Frame_Shift_Del p.E457Sfs*50 0.45 TCGA-MI-A75G-01 19 35978347 35978347 T - KRTDAP Frame_Shift_Del p.T95Lfs*17 0.13 TCGA-MI-A75G-01 19 40364247 40364247 G A FCGBP Missense_Mutation p.R4799C 0.24 probably_damaging(0.964) TCGA-MI-A75G-01 19 43237165 43237165 C A PSG3 Missense_Mutation p.E160D 0.34 deleterious(0.01) probably_damaging(0.983) TCGA-MI-A75G-01 19 49253497 49253497 C A FUT1 Nonsense_Mutation p.E348* 0.38 TCGA-MI-A75G-01 19 49686109 49686109 A T TRPM4 Missense_Mutation p.K513M 0.19 deleterious(0) possibly_damaging(0.682) TCGA-MI-A75G-01 19 49993944 49993944 C T RPL13A Intron 0.28 TCGA-MI-A75G-01 19 50119469 50119469 C T PRR12 Silent p.S1830S 0.38 TCGA-MI-A75G-01 19 50436140 50436141 AA - ATF5 Frame_Shift_Del p.K214Efs*20 0.42 TCGA-MI-A75G-01 19 51770635 51770635 A G SIGLECL1 Missense_Mutation p.H140R 0.50 tolerated(0.38) benign(0.003) TCGA-MI-A75G-01 19 53344538 53344538 C T ZNF468 Missense_Mutation p.A337T 0.36 tolerated(0.37) benign(0) TCGA-MI-A75G-01 19 53848860 53848860 G A ZNF845 Silent p.E39E 0.48 TCGA-MI-A75G-01 19 54244564 54244564 C A RNU6-982P 3'Flank 0.34 TCGA-MI-A75G-01 19 54745481 54745481 G T LILRA6 Missense_Mutation p.P210H 0.03 deleterious(0) probably_damaging(0.996) TCGA-MI-A75G-01 19 56223244 56223244 C G NLRP9 Missense_Mutation p.W922S 0.36 deleterious(0.02) possibly_damaging(0.843) TCGA-MI-A75G-01 19 58290644 58290644 G T ZNF586 Missense_Mutation p.G230V 0.24 deleterious(0) probably_damaging(0.999) TCGA-MI-A75G-01 19 58861838 58861840 TGT - A1BG In_Frame_Del p.N363del 0.29 TCGA-MI-A75G-01 19 633529 633530 - GCGCCGCCGCCGCC POLRMT 5'UTR 0.43 TCGA-MI-A75G-01 19 7805531 7805531 G C CD209 3'UTR 0.19 TCGA-MI-A75G-01 19 9071326 9071326 C A MUC16 Missense_Mutation p.V5374L 0.19 unknown(0) TCGA-MI-A75G-01 19 9071328 9071328 A C MUC16 Missense_Mutation p.L5373R 0.19 unknown(0) TCGA-MI-A75G-01 1 109177819 109177819 A T FAM102B 3'UTR 0.33 TCGA-MI-A75G-01 1 1293887 1293887 C T MXRA8 5'UTR 0.42 TCGA-MI-A75G-01 1 151345141 151345141 C A SELENBP1 5'UTR 0.28 TCGA-MI-A75G-01 1 153005352 153005352 C A SPRR1B 3'UTR 0.32 TCGA-MI-A75G-01 1 153005353 153005353 C T SPRR1B 3'UTR 0.32 TCGA-MI-A75G-01 1 156039508 156039508 C G RAB25 Silent p.T160T 0.26 TCGA-MI-A75G-01 1 156294772 156294772 T C CCT3 Missense_Mutation p.K138R 0.62 tolerated(0.15) benign(0.006) TCGA-MI-A75G-01 1 158532535 158532535 G T OR6P1 Missense_Mutation p.P287Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-MI-A75G-01 1 161068351 161068351 G T KLHDC9 Missense_Mutation p.R9L 0.24 tolerated_low_confidence(0.19) benign(0.001) TCGA-MI-A75G-01 1 168204373 168204373 A T SFT2D2 Nonsense_Mutation p.K91* 0.55 TCGA-MI-A75G-01 1 176905453 176905453 C A ASTN1 Missense_Mutation p.V811F 0.19 deleterious(0) possibly_damaging(0.512) TCGA-MI-A75G-01 1 178427346 178427346 A G RASAL2 Silent p.E973E 0.19 TCGA-MI-A75G-01 1 183209512 183209512 T A LAMC2 Missense_Mutation p.L1105H 0.08 deleterious(0) possibly_damaging(0.664) TCGA-MI-A75G-01 1 183909842 183909842 A T COLGALT2 Missense_Mutation p.Y493N 0.18 deleterious(0) probably_damaging(0.999) TCGA-MI-A75G-01 1 197053336 197053336 T C ASPM 3'UTR 0.67 TCGA-MI-A75G-01 1 203276590 203276590 G A BTG2 3'UTR 0.17 TCGA-MI-A75G-01 1 204429747 204429747 G C PIK3C2B Silent p.R451R 0.06 TCGA-MI-A75G-01 1 225707015 225707018 TCTT - ENAH Frame_Shift_Del p.E228Dfs*23 0.33 TCGA-MI-A75G-01 1 245849630 245849630 T C KIF26B Silent p.S1115S 0.29 TCGA-MI-A75G-01 1 248569656 248569656 A G OR2T1 Missense_Mutation p.M121V 0.38 tolerated(0.29) benign(0.02) TCGA-MI-A75G-01 1 248813969 248813969 A G OR2T27 Missense_Mutation p.Y73H 0.17 deleterious(0.01) benign(0.078) TCGA-MI-A75G-01 1 3542442 3542442 A G TPRG1L Silent p.K153K 0.22 TCGA-MI-A75G-01 1 3712543 3712543 G C LRRC47 Missense_Mutation p.D166E 0.28 tolerated(0.86) benign(0.029) TCGA-MI-A75G-01 1 3740103 3740103 C G CEP104 Silent p.T796T 0.30 TCGA-MI-A75G-01 1 3775376 3775376 T G DFFB Missense_Mutation p.V70G 0.24 deleterious(0) probably_damaging(0.949) TCGA-MI-A75G-01 1 44422488 44422488 A T IPO13 Missense_Mutation p.I371F 0.49 deleterious(0.01) possibly_damaging(0.514) TCGA-MI-A75G-01 1 47144177 47144177 C T EFCAB14 Missense_Mutation p.G482R 0.31 tolerated(0.07) probably_damaging(0.998) TCGA-MI-A75G-01 1 53352689 53352689 G A ZYG11A Missense_Mutation p.A690T 0.14 deleterious(0) probably_damaging(0.976) TCGA-MI-A75G-01 1 70881649 70881649 A G CTH Missense_Mutation p.Y60C 0.39 deleterious(0) probably_damaging(1) TCGA-MI-A75G-01 1 74671023 74671023 G A FPGT Missense_Mutation p.G431E 0.19 deleterious(0) possibly_damaging(0.866) TCGA-MI-A75G-01 1 9117613 9117613 C A SLC2A5 Nonsense_Mutation p.E63* 0.34 TCGA-MI-A75G-01 1 9117614 9117614 C A SLC2A5 Missense_Mutation p.M62I 0.34 tolerated(0.54) benign(0.006) TCGA-MI-A75G-01 20 25656381 25656381 G T ZNF337 Missense_Mutation p.R515S 0.30 tolerated(0.09) possibly_damaging(0.683) TCGA-MI-A75G-01 20 25656385 25656385 C G ZNF337 Missense_Mutation p.E513D 0.30 deleterious(0.02) benign(0.093) TCGA-MI-A75G-01 20 37191272 37191272 G A RALGAPB Missense_Mutation p.G1210D 0.14 deleterious(0) probably_damaging(1) TCGA-MI-A75G-01 20 44642129 44642129 C A MMP9 Missense_Mutation p.D522E 0.06 deleterious(0.01) probably_damaging(0.997) TCGA-MI-A75G-01 20 49221275 49221275 G C FAM65C Missense_Mutation p.S327R 0.14 tolerated(0.06) possibly_damaging(0.908) TCGA-MI-A75G-01 20 57428390 57428390 G A GNAS Missense_Mutation p.E24K 0.09 deleterious_low_confidence(0) unknown(0) TCGA-MI-A75G-01 20 57766370 57766370 G T ZNF831 Missense_Mutation p.G99V 0.22 deleterious(0) probably_damaging(0.999) TCGA-MI-A75G-01 20 60835074 60835074 G A OSBPL2 Silent p.E25E 0.09 TCGA-MI-A75G-01 20 61287812 61287812 C G SLCO4A1 Silent p.P2P 0.29 TCGA-MI-A75G-01 20 9319611 9319611 G C PLCB4 Missense_Mutation p.C99S 0.31 tolerated(0.32) benign(0.341) TCGA-MI-A75G-01 21 33975557 33975557 C A AP000275.65 Missense_Mutation p.A194S 0.25 tolerated(0.14) benign(0.264) TCGA-MI-A75G-01 21 35751741 35751741 C G SMIM11 5'UTR 0.06 TCGA-MI-A75G-01 21 43248679 43248679 C A PRDM15 Silent p.T825T 0.14 TCGA-MI-A75G-01 21 46604970 46604970 G A ADARB1 Missense_Mutation p.R550Q 0.33 tolerated(0.49) benign(0.127) TCGA-MI-A75G-01 21 47423312 47423312 C G COL6A1 Missense_Mutation p.F824L 0.33 deleterious(0.02) benign(0.351) TCGA-MI-A75G-01 22 19132075 19132075 C T DGCR14 Missense_Mutation p.E27K 0.47 tolerated_low_confidence(0.38) benign(0.007) TCGA-MI-A75G-01 22 39913376 39913376 A G MIEF1 3'UTR 0.27 TCGA-MI-A75G-01 22 43608519 43608519 C T SCUBE1 Silent p.E711E 0.12 TCGA-MI-A75G-01 22 50721222 50721234 GGGACCCCCCGTA - PLXNB2 Frame_Shift_Del p.Y965Pfs*42 0.35 TCGA-MI-A75G-01 22 50961497 50961497 C A NCAPH2 Silent p.R528R 0.31 TCGA-MI-A75G-01 2 128380906 128380906 A T MYO7B Missense_Mutation p.S1233C 0.15 deleterious(0) possibly_damaging(0.566) TCGA-MI-A75G-01 2 144194492 144194492 C T ARHGAP15 Missense_Mutation p.S195L 0.37 tolerated(0.27) benign(0.001) TCGA-MI-A75G-01 2 1481040 1481040 G T TPO Silent p.P334P 0.10 TCGA-MI-A75G-01 2 152322315 152322315 C T RIF1 Missense_Mutation p.S2094F 0.50 tolerated_low_confidence(0.1) benign(0.004) TCGA-MI-A75G-01 2 166627194 166627194 C A GALNT3 Missense_Mutation p.R6L 0.61 tolerated_low_confidence(0.18) benign(0.003) TCGA-MI-A75G-01 2 168106334 168106334 A T XIRP2 Missense_Mutation p.D2811V 0.41 benign(0.006) TCGA-MI-A75G-01 2 178634089 178634089 G A PDE11A Missense_Mutation p.H584Y 0.49 deleterious(0) possibly_damaging(0.775) TCGA-MI-A75G-01 2 187351141 187351141 G A ZC3H15 Missense_Mutation p.G11D 0.11 tolerated(0.06) benign(0.072) TCGA-MI-A75G-01 2 187627500 187627500 A G FAM171B Missense_Mutation p.T811A 0.42 deleterious(0.05) probably_damaging(0.938) TCGA-MI-A75G-01 2 207509036 207509036 T G AC010731.4 RNA 0.07 TCGA-MI-A75G-01 2 207634821 207634821 A G FASTKD2 Missense_Mutation p.I262V 0.45 deleterious(0.05) benign(0.338) TCGA-MI-A75G-01 2 208986520 208986520 G T CRYGD Nonsense_Mutation p.Y134* 0.48 TCGA-MI-A75G-01 2 231256927 231256927 C A SP140L Missense_Mutation p.L364I 0.52 deleterious(0) probably_damaging(0.999) TCGA-MI-A75G-01 2 234217900 234217900 G T SAG Missense_Mutation p.R22L 0.45 tolerated(0.1) possibly_damaging(0.793) TCGA-MI-A75G-01 2 239006994 239006994 T C SCLY Nonstop_Mutation p.*454Qext*26 0.36 TCGA-MI-A75G-01 2 39081308 39081308 T C DHX57 Missense_Mutation p.R640G 0.31 deleterious(0) probably_damaging(1) TCGA-MI-A75G-01 2 39414810 39414810 G T CDKL4 Missense_Mutation p.N231K 0.46 deleterious(0) probably_damaging(0.991) TCGA-MI-A75G-01 2 43819108 43819108 T C THADA Missense_Mutation p.I52V 0.49 deleterious(0.04) possibly_damaging(0.463) TCGA-MI-A75G-01 2 54001836 54001836 A T CHAC2 3'UTR 0.30 TCGA-MI-A75G-01 2 68546450 68546450 T C CNRIP1 Missense_Mutation p.D28G 0.40 deleterious(0) possibly_damaging(0.634) TCGA-MI-A75G-01 2 68613639 68613639 T A PLEK Missense_Mutation p.C160S 0.20 tolerated(1) benign(0.001) TCGA-MI-A75G-01 2 89278180 89278180 C A IGKV3-7 Missense_Mutation p.S52I 0.45 deleterious(0.01) benign(0.177) TCGA-MI-A75G-01 3 111780660 111780660 A T TMPRSS7 Missense_Mutation p.Q320L 0.29 deleterious(0.02) benign(0.187) TCGA-MI-A75G-01 3 121413069 121413069 C A GOLGB1 Missense_Mutation p.A2101S 0.14 possibly_damaging(0.773) TCGA-MI-A75G-01 3 126194031 126194032 - T ZXDC Frame_Shift_Ins p.R227Afs*28 0.14 TCGA-MI-A75G-01 3 139297767 139297767 C T NMNAT3 Silent p.V43V 0.17 TCGA-MI-A75G-01 3 142217617 142217617 C A ATR Splice_Site p.X1794_splice 0.29 TCGA-MI-A75G-01 3 14745959 14745959 A G C3orf20 Missense_Mutation p.T332A 0.13 tolerated(0.38) benign(0.004) TCGA-MI-A75G-01 3 183480001 183480001 C A YEATS2 Silent p.S627S 0.19 TCGA-MI-A75G-01 3 183959188 183959188 C G VWA5B2 Missense_Mutation p.P1059R 0.29 deleterious(0) probably_damaging(0.96) TCGA-MI-A75G-01 3 195513697 195513697 A G MUC4 Missense_Mutation p.L1585P 0.06 probably_damaging(0.946) TCGA-MI-A75G-01 3 38347464 38347464 G T SLC22A14 5'UTR 0.18 TCGA-MI-A75G-01 3 384669 384669 A G CHL1 Missense_Mutation p.K228E 0.27 tolerated(0.1) benign(0.304) TCGA-MI-A75G-01 3 42243973 42243976 CTCC TAA TRAK1 Frame_Shift_Del p.S492Nfs*8 0.15 TCGA-MI-A75G-01 3 42735224 42735224 A T HHATL Missense_Mutation p.L378Q 0.18 deleterious(0) probably_damaging(0.995) TCGA-MI-A75G-01 3 42735225 42735225 G T HHATL Missense_Mutation p.L378M 0.18 deleterious(0.02) probably_damaging(0.993) TCGA-MI-A75G-01 3 46245458 46245458 C A CCR1 Missense_Mutation p.G116V 0.28 deleterious(0) probably_damaging(1) TCGA-MI-A75G-01 3 46307579 46307579 G T CCR3 Missense_Mutation p.K331N 0.34 tolerated(0.06) benign(0.333) TCGA-MI-A75G-01 3 46400024 46400024 T C CCR2 Intron 0.26 TCGA-MI-A75G-01 3 46414385 46414388 TGGA - CCR5 Intron 0.34 TCGA-MI-A75G-01 3 46480950 46480950 G T LTF Missense_Mutation p.A582D 0.29 deleterious(0.01) probably_damaging(0.979) TCGA-MI-A75G-01 3 46730917 46730917 T A ALS2CL Missense_Mutation p.E5V 0.11 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-MI-A75G-01 3 48686612 48686612 C A CELSR3 Missense_Mutation p.W2170L 0.19 deleterious(0.01) probably_damaging(1) TCGA-MI-A75G-01 3 49449889 49449889 G T TCTA Missense_Mutation p.L10F 0.25 tolerated(0.08) benign(0.158) TCGA-MI-A75G-01 3 49449890 49449890 C T TCTA Nonsense_Mutation p.Q11* 0.23 TCGA-MI-A75G-01 3 50256338 50256338 G T SLC38A3 RNA 0.20 TCGA-MI-A75G-01 3 57419403 57419403 A T DNAH12 Missense_Mutation p.L1580H 0.13 deleterious(0) probably_damaging(0.963) TCGA-MI-A75G-01 3 77607255 77607255 A T ROBO2 Missense_Mutation p.R480S 0.08 deleterious(0.01) possibly_damaging(0.537) TCGA-MI-A75G-01 3 93780424 93780424 T G DHFRL1 5'UTR 0.24 TCGA-MI-A75G-01 3 99567271 99567271 A G FILIP1L Silent p.P1083P 0.17 TCGA-MI-A75G-01 3 99567272 99567272 G T FILIP1L Missense_Mutation p.P1083H 0.17 tolerated(0.07) probably_damaging(1) TCGA-MI-A75G-01 4 100822217 100822218 - T DNAJB14 Frame_Shift_Ins p.E370Rfs*8 0.27 TCGA-MI-A75G-01 4 110915962 110915962 C T EGF Silent p.P977P 0.30 TCGA-MI-A75G-01 4 122681293 122681293 C G TMEM155 3'UTR 0.38 TCGA-MI-A75G-01 4 134111424 134111424 C G PCDH10 3'UTR 0.40 TCGA-MI-A75G-01 4 13604910 13604910 T C BOD1L1 Missense_Mutation p.K1205R 0.36 benign(0.113) TCGA-MI-A75G-01 4 148441067 148441067 C A EDNRA Missense_Mutation p.P162H 0.48 deleterious(0.03) probably_damaging(1) TCGA-MI-A75G-01 4 159630850 159630850 T C PPID 3'UTR 0.32 TCGA-MI-A75G-01 4 41951403 41951403 G T TMEM33 Splice_Site p.X205_splice 0.46 TCGA-MI-A75G-01 4 42571193 42571193 C T ATP8A1 Missense_Mutation p.C442Y 0.21 tolerated(1) benign(0) TCGA-MI-A75G-01 4 74285252 74285252 C T ALB Missense_Mutation p.P561S 0.52 deleterious(0) probably_damaging(0.995) TCGA-MI-A75G-01 4 88535128 88535128 C A DSPP Missense_Mutation p.H438Q 0.15 possibly_damaging(0.899) TCGA-MI-A75G-01 5 127685696 127685696 A G FBN2 Silent p.D938D 0.11 TCGA-MI-A75G-01 5 127704957 127704957 T C FBN2 Silent p.A722A 0.16 TCGA-MI-A75G-01 5 129520910 129520910 A T CHSY3 Missense_Mutation p.K692M 0.10 tolerated(0.15) benign(0.016) TCGA-MI-A75G-01 5 139740530 139740530 C T SLC4A9 Missense_Mutation p.P146S 0.17 tolerated(0.33) benign(0.062) TCGA-MI-A75G-01 5 141248170 141248170 T C PCDH1 Silent p.L289L 0.13 TCGA-MI-A75G-01 5 143586687 143586687 G A KCTD16 Missense_Mutation p.S137N 0.16 deleterious(0.01) possibly_damaging(0.889) TCGA-MI-A75G-01 5 147788727 147788727 C G FBXO38 Missense_Mutation p.C303W 0.28 deleterious(0) probably_damaging(0.994) TCGA-MI-A75G-01 5 150925186 150925186 G T FAT2 Silent p.P1834P 0.19 TCGA-MI-A75G-01 5 156934075 156934075 C T ADAM19 Missense_Mutation p.G327R 0.23 deleterious(0) probably_damaging(1) TCGA-MI-A75G-01 5 176025588 176025588 C T GPRIN1 Silent p.V416V 0.34 TCGA-MI-A75G-01 5 31538578 31538578 T G C5orf22 Missense_Mutation p.S197A 0.32 tolerated(0.49) benign(0.257) TCGA-MI-A75G-01 5 53815382 53815382 G T SNX18 Missense_Mutation p.D534Y 0.04 deleterious(0) probably_damaging(1) TCGA-MI-A75G-01 5 65370901 65370901 A G ERBB2IP Missense_Mutation p.N1276S 0.31 tolerated(0.37) benign(0.405) TCGA-MI-A75G-01 5 76342325 76342325 A G AGGF1 Missense_Mutation p.I342V 0.26 tolerated(0.42) benign(0.001) TCGA-MI-A75G-01 5 7707833 7707833 C A ADCY2 Missense_Mutation p.S428Y 0.30 deleterious(0) probably_damaging(0.957) TCGA-MI-A75G-01 5 93775731 93775731 A T KIAA0825 Missense_Mutation p.L818Q 0.32 deleterious(0) probably_damaging(1) TCGA-MI-A75G-01 6 110540596 110540596 A T CDC40 Nonsense_Mutation p.K374* 0.14 TCGA-MI-A75G-01 6 129588356 129588356 G A LAMA2 Missense_Mutation p.E772K 0.13 tolerated(0.3) benign(0.297) TCGA-MI-A75G-01 6 13470644 13470644 G T AL583828.1 5'UTR 0.45 TCGA-MI-A75G-01 6 139265148 139265148 T C REPS1 Missense_Mutation p.Q253R 0.64 tolerated(0.51) benign(0.011) TCGA-MI-A75G-01 6 147049794 147049794 C A ADGB Missense_Mutation p.L813I 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-MI-A75G-01 6 147103205 147103205 C T ADGB Silent p.S1304S 0.12 TCGA-MI-A75G-01 6 147830259 147830259 G C SAMD5 Missense_Mutation p.Q65H 0.17 deleterious(0.03) possibly_damaging(0.694) TCGA-MI-A75G-01 6 151751308 151751308 C T RMND1 Missense_Mutation p.G232R 0.15 deleterious(0) probably_damaging(0.99) TCGA-MI-A75G-01 6 170104217 170104217 A C C6orf120 3'UTR 0.64 TCGA-MI-A75G-01 6 26056379 26056379 A G HIST1H1C Missense_Mutation p.L93P 0.45 deleterious(0) possibly_damaging(0.861) TCGA-MI-A75G-01 6 26505270 26505270 G A BTN1A1 Missense_Mutation p.G182E 0.44 tolerated(0.05) possibly_damaging(0.585) TCGA-MI-A75G-01 6 28121655 28121655 C G ZKSCAN8 Missense_Mutation p.L533V 0.39 deleterious(0) probably_damaging(0.999) TCGA-MI-A75G-01 6 32163206 32163206 G T NOTCH4 3'UTR 0.44 TCGA-MI-A75G-01 6 35287441 35287441 A C DEF6 Missense_Mutation p.E452D 0.39 deleterious(0) possibly_damaging(0.636) TCGA-MI-A75G-01 6 41889314 41889314 A T BYSL Missense_Mutation p.K5M 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-MI-A75G-01 6 44221453 44221453 T C HSP90AB1 3'UTR 0.49 TCGA-MI-A75G-01 6 46787312 46787312 A G MEP1A Missense_Mutation p.I143V 0.55 deleterious(0.01) probably_damaging(0.951) TCGA-MI-A75G-01 6 86322505 86322505 T C SYNCRIP 3'Flank 0.29 TCGA-MI-A75G-01 6 88138481 88138481 G T C6ORF165 Missense_Mutation p.M366I 0.16 tolerated(0.22) benign(0.002) TCGA-MI-A75G-01 6 91226159 91226159 T A MAP3K7 3'UTR 0.10 TCGA-MI-A75G-01 6 93969103 93969103 G A EPHA7 Silent p.S631S 0.69 TCGA-MI-A75G-01 7 100085812 100085812 C T NYAP1 Silent p.S156S 0.21 TCGA-MI-A75G-01 7 100190612 100190612 G T FBXO24 Missense_Mutation p.E293D 0.04 deleterious_low_confidence(0.01) benign(0.217) TCGA-MI-A75G-01 7 100839352 100839352 G A MOGAT3 Missense_Mutation p.L301F 0.30 tolerated(0.05) benign(0.059) TCGA-MI-A75G-01 7 106820464 106820464 A G HBP1 Silent p.P42P 0.25 TCGA-MI-A75G-01 7 107314761 107314761 A G SLC26A4 Missense_Mutation p.S190G 0.19 tolerated(0.42) benign(0.007) TCGA-MI-A75G-01 7 122342607 122342620 AGAATGATTCCCGA - RNF148 Frame_Shift_Del p.F62Sfs*13 0.20 TCGA-MI-A75G-01 7 122526241 122526241 C A CADPS2 Missense_Mutation p.G51C 0.19 deleterious(0.01) possibly_damaging(0.478) TCGA-MI-A75G-01 7 123672284 123672284 G A TMEM229A Silent p.F258F 0.16 TCGA-MI-A75G-01 7 135613067 135613067 T C AC015987.2 3'UTR 0.11 TCGA-MI-A75G-01 7 139726111 139726111 C A PARP12 Missense_Mutation p.A556S 0.17 tolerated(0.71) benign(0.068) TCGA-MI-A75G-01 7 150327197 150327197 C A GIMAP6 Nonsense_Mutation p.E12* 0.10 TCGA-MI-A75G-01 7 151254299 151254299 T C PRKAG2 Silent p.T566T 0.21 TCGA-MI-A75G-01 7 156974809 156974809 G C UBE3C Missense_Mutation p.V260L 0.16 deleterious(0.03) benign(0.012) TCGA-MI-A75G-01 7 44798889 44798889 G A ZMIZ2 Missense_Mutation p.G275R 0.25 deleterious(0) benign(0.439) TCGA-MI-A75G-01 7 72419590 72419590 A T POM121 3'UTR 0.20 TCGA-MI-A75G-01 7 73256365 73256365 C A WBSCR27 Missense_Mutation p.A36S 0.11 deleterious(0) possibly_damaging(0.902) TCGA-MI-A75G-01 7 81374398 81374398 G T HGF Missense_Mutation p.L222I 0.13 deleterious(0.04) benign(0.025) TCGA-MI-A75G-01 7 90896636 90896636 G A FZD1 3'UTR 0.06 TCGA-MI-A75G-01 7 98987539 98987539 A G ARPC1B Missense_Mutation p.K135R 0.21 tolerated(0.08) probably_damaging(0.997) TCGA-MI-A75G-01 7 99008688 99008688 T A BUD31 Intron 0.15 TCGA-MI-A75G-01 7 99226838 99226838 C T ZSCAN25 Missense_Mutation p.A277V 0.23 tolerated(0.33) benign(0.001) TCGA-MI-A75G-01 7 99695002 99695002 T C MCM7 Missense_Mutation p.I375V 0.22 deleterious(0.02) possibly_damaging(0.732) TCGA-MI-A75G-01 8 104384015 104384015 A G CTHRC1 Missense_Mutation p.Q44R 0.24 tolerated_low_confidence(0.11) benign(0.018) TCGA-MI-A75G-01 8 11705647 11705647 T C CTSB Missense_Mutation p.Y154C 0.48 deleterious(0.01) benign(0.174) TCGA-MI-A75G-01 8 128428491 128428491 A G POU5F1B Missense_Mutation p.E127G 0.46 tolerated(0.05) probably_damaging(0.961) TCGA-MI-A75G-01 8 15480657 15480657 T G TUSC3 Missense_Mutation p.N69K 0.35 deleterious(0) probably_damaging(0.988) TCGA-MI-A75G-01 8 15480659 15480659 G T TUSC3 Missense_Mutation p.G70V 0.35 tolerated(0.08) probably_damaging(0.953) TCGA-MI-A75G-01 8 17228586 17228586 G T MTMR7 Nonsense_Mutation p.C90* 0.34 TCGA-MI-A75G-01 8 41518002 41518002 C G ANK1 Intron 0.08 TCGA-MI-A75G-01 8 43216190 43216190 G C POTEA RNA 0.25 TCGA-MI-A75G-01 8 48794637 48794637 T C PRKDC Missense_Mutation p.M1599V 0.33 benign(0.192) TCGA-MI-A75G-01 8 61135274 61135274 G T CA8 Silent p.I224I 0.42 TCGA-MI-A75G-01 8 72211880 72211880 G A EYA1 Missense_Mutation p.S211L 0.16 deleterious(0.01) benign(0.138) TCGA-MI-A75G-01 9 129595192 129595192 A G ZBTB43 Missense_Mutation p.N135S 0.33 tolerated(0.82) benign(0.005) TCGA-MI-A75G-01 9 21409382 21409382 A G IFNA8 Silent p.K69K 0.50 TCGA-MI-A75G-01 9 23705038 23705038 A G ELAVL2 Missense_Mutation p.I122T 0.07 deleterious(0) possibly_damaging(0.831) TCGA-MI-A75G-01 9 34725971 34725971 C G FAM205A Silent p.G422G 0.20 TCGA-MI-A75G-01 9 35685682 35685688 CTTCTGC - TPM2 Frame_Shift_Del p.Q111Wfs*15 0.38 TCGA-MI-A75G-01 9 36677403 36677403 C A MELK 3'UTR 0.75 TCGA-MI-A75G-01 9 6814872 6814872 A C KDM4C Intron 0.58 TCGA-MI-A75G-01 9 72000833 72000833 G T FAM189A2 Missense_Mutation p.D276Y 0.40 deleterious(0) probably_damaging(1) TCGA-MI-A75G-01 9 78965753 78965753 C A PCSK5 Missense_Mutation p.A1632E 0.43 tolerated(0.19) benign(0.008) TCGA-MI-A75G-01 9 79973288 79973288 C G VPS13A Missense_Mutation p.H2657D 0.36 tolerated(0.09) benign(0.044) TCGA-MI-A75G-01 X 100668006 100668006 G T HNRNPH2 Missense_Mutation p.A344S 0.41 deleterious(0.01) probably_damaging(1) TCGA-MI-A75G-01 X 129350034 129350035 - A ZNF280C Frame_Shift_Ins p.L523Ffs*28 0.27 TCGA-MI-A75G-01 X 1327776 1327776 G C CRLF2 Missense_Mutation p.I35M 0.15 deleterious(0) probably_damaging(0.979) TCGA-MI-A75G-01 X 148798282 148798282 C T MAGEA11 Missense_Mutation p.P379L 0.51 deleterious(0) probably_damaging(0.996) TCGA-MI-A75G-01 X 149818234 149818234 G A MTM1 Missense_Mutation p.E305K 0.06 deleterious(0) probably_damaging(0.996) TCGA-MI-A75G-01 X 46949222 46949222 G T RGN Missense_Mutation p.G132W 0.14 deleterious(0) probably_damaging(1) TCGA-MI-A75G-01 X 55187569 55187569 C T FAM104B Splice_Site p.X7_splice 0.08 TCGA-MI-A75G-01 X 79937564 79937576 AACTTCATTTGTT - BRWD3 Frame_Shift_Del p.K1472Sfs*134 0.16 TCGA-MI-A75G-01 X 86772872 86772872 G C KLHL4 5'UTR 0.25 TCGA-MI-A75G-01 X 86772873 86772873 G T KLHL4 5'UTR 0.25 TCGA-MI-A75G-01 Y 4967403 4967403 A G PCDH11Y Missense_Mutation p.Q595R 0.16 tolerated(1) possibly_damaging(0.755) TCGA-MI-A75H-01 10 124273831 124273831 G A HTRA1 Missense_Mutation p.E467K 0.26 deleterious(0.04) benign(0.187) TCGA-MI-A75H-01 10 55568990 55568990 G A PCDH15 Missense_Mutation p.T541I 0.33 deleterious_low_confidence(0.01) unknown(0) TCGA-MI-A75H-01 10 70333914 70333914 A G TET1 Missense_Mutation p.T607A 0.38 deleterious(0) probably_damaging(0.981) TCGA-MI-A75H-01 11 101375213 101375213 C - TRPC6 Frame_Shift_Del p.D163Mfs*5 0.20 TCGA-MI-A75H-01 11 18105155 18105155 T - SAAL1 Frame_Shift_Del p.D389Vfs*5 0.24 TCGA-MI-A75H-01 11 4388835 4388835 G A OR52B4 Missense_Mutation p.P231S 0.43 tolerated(0.11) benign(0.344) TCGA-MI-A75H-01 11 8457664 8457664 A G STK33 Silent p.L324L 0.36 TCGA-MI-A75H-01 11 9868632 9868632 T C SBF2 Splice_Site p.X936_splice 0.32 TCGA-MI-A75H-01 12 100452950 100452950 C T UHRF1BP1L Nonsense_Mutation p.W702* 0.33 TCGA-MI-A75H-01 12 126068404 126068404 A T TMEM132B Missense_Mutation p.E429V 0.33 deleterious(0) probably_damaging(0.943) TCGA-MI-A75H-01 12 132636050 132636050 G A NOC4L Silent p.V365V 0.50 TCGA-MI-A75H-01 12 21325651 21325651 C A SLCO1B1 Missense_Mutation p.S51Y 0.42 deleterious(0) probably_damaging(0.986) TCGA-MI-A75H-01 12 48152507 48152507 G T RAPGEF3 5'Flank 0.38 TCGA-MI-A75H-01 12 5020766 5020766 C - KCNA1 Frame_Shift_Del p.L76* 0.26 TCGA-MI-A75H-01 12 51398568 51398568 C T SLC11A2 Intron 0.40 TCGA-MI-A75H-01 12 51693401 51693401 T A BIN2 Missense_Mutation p.K169M 0.34 deleterious(0) probably_damaging(0.997) TCGA-MI-A75H-01 12 54394466 54394466 T A HOXC9 Missense_Mutation p.L165H 0.25 tolerated(0.24) possibly_damaging(0.67) TCGA-MI-A75H-01 12 58140038 58140038 A C TSPAN31 Missense_Mutation p.Q104P 0.32 deleterious(0) probably_damaging(0.91) TCGA-MI-A75H-01 12 85450884 85450884 G A LRRIQ1 Silent p.V771V 0.38 TCGA-MI-A75H-01 12 8759514 8759514 T A AICDA Missense_Mutation p.R35W 0.32 deleterious(0.04) probably_damaging(0.937) TCGA-MI-A75H-01 13 101735199 101735199 T G NALCN Silent p.A1242A 0.42 TCGA-MI-A75H-01 13 103383301 103383301 C G CCDC168 Missense_Mutation p.K1953N 0.34 tolerated(0.05) unknown(0) TCGA-MI-A75H-01 13 113210371 113210371 G A TUBGCP3 Missense_Mutation p.T239M 0.33 tolerated(0.09) benign(0.018) TCGA-MI-A75H-01 13 36049446 36049446 A G MAB21L1 Missense_Mutation p.L277P 0.29 deleterious(0) probably_damaging(0.991) TCGA-MI-A75H-01 14 106354426 106354426 C A IGHD2-21 Missense_Mutation p.W4L 0.29 unknown(0) TCGA-MI-A75H-01 14 45521641 45521641 A G FAM179B Missense_Mutation p.Y1386C 0.31 tolerated(0.08) possibly_damaging(0.79) TCGA-MI-A75H-01 14 51390766 51390766 C A PYGL Missense_Mutation p.R194L 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-MI-A75H-01 14 54418919 54418919 G T BMP4 Missense_Mutation p.L8M 0.06 deleterious(0.02) probably_damaging(0.982) TCGA-MI-A75H-01 14 88411981 88411981 G A GALC Missense_Mutation p.T529M 0.34 deleterious(0.01) probably_damaging(0.995) TCGA-MI-A75H-01 15 20644207 20644207 G C HERC2P3 RNA 0.27 TCGA-MI-A75H-01 15 33872221 33872221 A G RYR3 Missense_Mutation p.E438G 0.32 benign(0.403) TCGA-MI-A75H-01 15 34673744 34673744 C T GOLGA8A Silent p.Q560Q 0.13 TCGA-MI-A75H-01 15 34819965 34819965 C T GOLGA8B Silent p.Q560Q 0.12 TCGA-MI-A75H-01 15 42519078 42519078 G A TMEM87A Silent p.A443A 0.29 TCGA-MI-A75H-01 15 81235392 81235392 T G KIAA1199 Missense_Mutation p.L1269R 0.34 tolerated(0.06) probably_damaging(0.999) TCGA-MI-A75H-01 15 90159653 90159653 A T TICRR Missense_Mutation p.T963S 0.37 deleterious(0.02) benign(0.331) TCGA-MI-A75H-01 16 2256124 2256124 T C MLST8 Missense_Mutation p.V13A 0.38 deleterious(0) possibly_damaging(0.877) TCGA-MI-A75H-01 17 10408576 10408576 A G MYH1 Missense_Mutation p.M780T 0.33 deleterious(0) probably_damaging(0.993) TCGA-MI-A75H-01 17 15508540 15508541 AT - RP11-385D13.1 Frame_Shift_Del p.I787Qfs*28 0.45 TCGA-MI-A75H-01 17 18874756 18874756 T C FAM83G Silent p.L796L 0.20 TCGA-MI-A75H-01 17 34432826 34432826 A G CCL4 3'UTR 0.31 TCGA-MI-A75H-01 17 39183121 39183121 C A KRTAP1-5 Missense_Mutation p.G96V 0.37 tolerated(0.46) unknown(0) TCGA-MI-A75H-01 17 39183122 39183122 C A KRTAP1-5 Missense_Mutation p.G96C 0.38 tolerated(0.38) unknown(0) TCGA-MI-A75H-01 17 43911988 43911988 A T CRHR1 Splice_Site p.X399_splice 0.17 TCGA-MI-A75H-01 17 50235089 50235089 A G CA10 Missense_Mutation p.S20P 0.40 tolerated(0.24) benign(0.029) TCGA-MI-A75H-01 17 5462324 5462325 - A NLRP1 Frame_Shift_Ins p.L564Ffs*14 0.25 TCGA-MI-A75H-01 17 66246521 66246521 G T AMZ2 Nonsense_Mutation p.E65* 0.17 TCGA-MI-A75H-01 17 79974909 79974909 T A ASPSCR1 Missense_Mutation p.V617D 0.42 tolerated(0.55) benign(0.192) TCGA-MI-A75H-01 18 10488026 10488026 C A APCDD1 Silent p.I512I 0.40 TCGA-MI-A75H-01 18 14511960 14511960 G A POTEC Silent p.L522L 0.31 TCGA-MI-A75H-01 18 44555325 44555325 G T TCEB3C Missense_Mutation p.P297T 0.03 tolerated(0.28) benign(0.008) TCGA-MI-A75H-01 18 57021788 57021788 T A LMAN1 Missense_Mutation p.I168L 0.31 deleterious(0.01) benign(0.023) TCGA-MI-A75H-01 19 15280956 15280956 T A NOTCH3 Missense_Mutation p.M1714L 0.41 tolerated(0.43) benign(0.001) TCGA-MI-A75H-01 19 16965104 16965104 G A SIN3B Intron 0.28 TCGA-MI-A75H-01 19 18375495 18375495 C A KIAA1683 Missense_Mutation p.R952L 0.28 deleterious(0.03) possibly_damaging(0.699) TCGA-MI-A75H-01 19 19369444 19369444 C T HAPLN4 Silent p.G235G 0.45 TCGA-MI-A75H-01 19 20736517 20736517 A G ZNF737 Missense_Mutation p.L43P 0.40 deleterious(0) probably_damaging(0.99) TCGA-MI-A75H-01 19 22939414 22939414 T A ZNF99 3'Flank 0.45 TCGA-MI-A75H-01 19 48018261 48018261 G A NAPA 5'UTR 0.39 TCGA-MI-A75H-01 19 49552122 49552122 A T CGB8 5'UTR 0.34 TCGA-MI-A75H-01 19 51633221 51633221 T C SIGLEC9 Intron 0.21 TCGA-MI-A75H-01 19 52570807 52570807 C T ZNF841 Missense_Mutation p.G110R 0.13 tolerated(0.47) benign(0.024) TCGA-MI-A75H-01 19 52877766 52877766 G T ZNF880 Intron 0.59 TCGA-MI-A75H-01 19 53854549 53854549 A T ZNF845 Missense_Mutation p.E207D 0.18 tolerated(0.09) probably_damaging(0.977) TCGA-MI-A75H-01 19 53856524 53856524 A T ZNF845 Nonsense_Mutation p.K866* 0.21 TCGA-MI-A75H-01 19 53995183 53995183 T A ZNF813 Missense_Mutation p.L566H 0.20 deleterious(0) possibly_damaging(0.825) TCGA-MI-A75H-01 19 54301639 54301639 C T NLRP12 Missense_Mutation p.A929T 0.42 deleterious(0.03) probably_damaging(0.943) TCGA-MI-A75H-01 19 55263136 55263136 T A KIR2DL3 Missense_Mutation p.S251T 0.50 deleterious(0.05) probably_damaging(0.977) TCGA-MI-A75H-01 19 56485050 56485050 G T NLRP8 Missense_Mutation p.C856F 0.23 deleterious(0) possibly_damaging(0.868) TCGA-MI-A75H-01 19 58153579 58153579 G C ZNF211 3'UTR 0.26 TCGA-MI-A75H-01 19 58419943 58419943 C T ZNF417 Missense_Mutation p.S568N 0.18 deleterious(0) benign(0.101) TCGA-MI-A75H-01 19 6226990 6226990 T A MLLT1 Nonsense_Mutation p.K182* 0.25 TCGA-MI-A75H-01 19 8167618 8167618 A G FBN3 Silent p.T1693T 0.36 TCGA-MI-A75H-01 19 9072822 9072822 G T MUC16 Nonsense_Mutation p.S4875* 0.34 TCGA-MI-A75H-01 19 9085379 9085379 G A MUC16 Missense_Mutation p.L2146F 0.35 unknown(0) TCGA-MI-A75H-01 1 103428289 103428289 C T COL11A1 Missense_Mutation p.G982R 0.30 unknown(0) TCGA-MI-A75H-01 1 113231596 113231596 T C MOV10 Silent p.Y59Y 0.33 TCGA-MI-A75H-01 1 145109584 145109584 G A SEC22B RNA 0.08 TCGA-MI-A75H-01 1 149649099 149649099 A T RP11-353N4.5 RNA 0.15 TCGA-MI-A75H-01 1 150531864 150531864 C G ADAMTSL4 Missense_Mutation p.H955Q 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-MI-A75H-01 1 151139457 151139457 C T SCNM1 Missense_Mutation p.A57V 0.22 deleterious(0.02) benign(0.423) TCGA-MI-A75H-01 1 152187705 152187705 C T HRNR Missense_Mutation p.G2134R 0.06 unknown(0) TCGA-MI-A75H-01 1 152484038 152484038 T C LCE5A Missense_Mutation p.C10R 0.32 tolerated_low_confidence(0.2) unknown(0) TCGA-MI-A75H-01 1 159558103 159558103 T C APCS Missense_Mutation p.Y93H 0.25 tolerated(0.33) benign(0.12) TCGA-MI-A75H-01 1 172017769 172017769 C A DNM3 Missense_Mutation p.P405Q 0.44 deleterious(0) probably_damaging(1) TCGA-MI-A75H-01 1 228004984 228004984 G T PRSS38 Missense_Mutation p.W129L 0.46 tolerated(0.11) probably_damaging(0.984) TCGA-MI-A75H-01 1 228481978 228481978 A G OBSCN Missense_Mutation p.R4182G 0.28 benign(0.014) TCGA-MI-A75H-01 1 29609329 29609329 G C PTPRU Silent p.A670A 0.35 TCGA-MI-A75H-01 1 40735691 40735691 G T ZMPSTE24 Silent p.V173V 0.27 TCGA-MI-A75H-01 1 46099924 46099924 G T GPBP1L1 Intron 0.30 TCGA-MI-A75H-01 1 85403450 85403450 T G MCOLN2 Silent p.P441P 0.33 TCGA-MI-A75H-01 20 56179629 56179629 C T ZBP1 Silent p.%3D 0.24 TCGA-MI-A75H-01 20 62153144 62153144 G A PPDPF Missense_Mutation p.S86N 0.40 tolerated(0.18) benign(0.015) TCGA-MI-A75H-01 21 10942966 10942966 A T TPTE Missense_Mutation p.H207Q 0.17 tolerated(0.19) benign(0.348) TCGA-MI-A75H-01 21 27107190 27107190 G A ATP5J Intron 0.20 TCGA-MI-A75H-01 21 46935517 46935517 G T SLC19A1 3'UTR 0.27 TCGA-MI-A75H-01 22 20918837 20918837 G A MED15 Silent p.Q184Q 0.07 TCGA-MI-A75H-01 22 45972872 45972872 G T FBLN1 Missense_Mutation p.R619L 0.07 deleterious(0.01) possibly_damaging(0.726) TCGA-MI-A75H-01 22 46655628 46655628 C T PKDREJ Missense_Mutation p.V1198M 0.23 tolerated(0.18) benign(0.015) TCGA-MI-A75H-01 22 51113571 51113571 T C SHANK3 Silent p.Y53Y 0.73 TCGA-MI-A75H-01 2 149227546 149227546 T C MBD5 Silent p.S678S 0.22 TCGA-MI-A75H-01 2 159526346 159526346 A G PKP4 Missense_Mutation p.K948R 0.33 tolerated(0.17) benign(0.079) TCGA-MI-A75H-01 2 161029224 161029224 C A ITGB6 Silent p.R259R 0.33 TCGA-MI-A75H-01 2 166533005 166533005 G A CSRNP3 Missense_Mutation p.E198K 0.30 deleterious(0) probably_damaging(0.991) TCGA-MI-A75H-01 2 168115372 168115372 G A XIRP2 3'UTR 0.33 TCGA-MI-A75H-01 2 170072882 170072882 C T LRP2 Missense_Mutation p.A1903T 0.31 probably_damaging(0.933) TCGA-MI-A75H-01 2 176948522 176948522 T A EVX2 5'UTR 0.27 TCGA-MI-A75H-01 2 179432581 179432581 C T TTN Missense_Mutation p.G26093E 0.35 TCGA-MI-A75H-01 2 179554080 179554080 T G TTN Missense_Mutation p.K10650Q 0.33 TCGA-MI-A75H-01 2 179614607 179614607 C A TTN Intron 0.39 TCGA-MI-A75H-01 2 186670429 186670429 A G FSIP2 Missense_Mutation p.R5555G 0.32 benign(0.004) TCGA-MI-A75H-01 2 220102300 220102300 G T GLB1L Nonsense_Mutation p.Y541* 0.29 TCGA-MI-A75H-01 2 220370193 220370193 G A GMPPA Missense_Mutation p.A257T 0.31 deleterious(0) possibly_damaging(0.642) TCGA-MI-A75H-01 2 220422736 220422736 G A OBSL1 Missense_Mutation p.A1200V 0.27 tolerated(0.26) possibly_damaging(0.672) TCGA-MI-A75H-01 2 233274441 233274441 C - ALPPL2 Frame_Shift_Del p.L487Wfs*113 0.39 TCGA-MI-A75H-01 2 30143210 30143210 G A ALK Missense_Mutation p.P106S 0.23 tolerated_low_confidence(0.2) benign(0.001) TCGA-MI-A75H-01 2 70106161 70106161 A T GMCL1 3'UTR 0.35 TCGA-MI-A75H-01 2 86479176 86479176 C T REEP1 Silent p.L114L 0.12 TCGA-MI-A75H-01 2 89459521 89459521 C G IGKV6-21 Missense_Mutation p.G19A 0.39 tolerated(0.1) benign(0.078) TCGA-MI-A75H-01 3 10102063 10102063 T C FANCD2 Missense_Mutation p.M581T 0.42 tolerated(0.08) possibly_damaging(0.79) TCGA-MI-A75H-01 3 124303538 124303538 G C KALRN 5'UTR 0.50 TCGA-MI-A75H-01 3 127541280 127541280 T C MGLL 5'UTR 0.35 TCGA-MI-A75H-01 3 155640077 155640077 G T GMPS Missense_Mutation p.A474S 0.33 tolerated(0.74) benign(0) TCGA-MI-A75H-01 3 168838896 168838896 C A MECOM Silent p.S237S 0.42 TCGA-MI-A75H-01 3 169565966 169565966 A T LRRC31 Silent p.S423S 0.48 TCGA-MI-A75H-01 3 195609177 195609177 C A TNK2 Missense_Mutation p.G274V 0.28 deleterious(0) probably_damaging(0.997) TCGA-MI-A75H-01 3 41266098 41266098 A T CTNNB1 Missense_Mutation p.D32V 0.34 deleterious(0) probably_damaging(0.988) TCGA-MI-A75H-01 3 44762400 44762400 G A ZNF502 Missense_Mutation p.D31N 0.37 tolerated(0.13) benign(0.001) TCGA-MI-A75H-01 3 45077186 45077186 A T CLEC3B Missense_Mutation p.N127Y 0.43 deleterious(0.02) possibly_damaging(0.516) TCGA-MI-A75H-01 3 57898307 57898307 T A SLMAP Silent p.L599L 0.45 TCGA-MI-A75H-01 4 123128393 123128393 G A KIAA1109 Missense_Mutation p.D543N 0.25 probably_damaging(0.909) TCGA-MI-A75H-01 4 123664403 123664404 - CAGG BBS12 Frame_Shift_Ins p.V454Afs*10 0.30 TCGA-MI-A75H-01 4 155157921 155157921 C T DCHS2 Missense_Mutation p.S2173N 0.41 tolerated(0.08) benign(0.311) TCGA-MI-A75H-01 4 155264728 155264728 T C DCHS2 Missense_Mutation p.K291E 0.31 tolerated(1) benign(0) TCGA-MI-A75H-01 4 155507134 155507134 C T FGA Missense_Mutation p.V483M 0.34 tolerated(0.12) probably_damaging(0.989) TCGA-MI-A75H-01 4 41984018 41984018 C T DCAF4L1 Missense_Mutation p.A70V 0.44 tolerated(0.25) benign(0.006) TCGA-MI-A75H-01 4 42583637 42583637 C A ATP8A1 Splice_Site p.X278_splice 0.44 TCGA-MI-A75H-01 4 79391155 79391155 G A FRAS1 Silent p.P2427P 0.35 TCGA-MI-A75H-01 4 88584445 88584445 T C DMP1 Silent p.D505D 0.07 TCGA-MI-A75H-01 4 98893569 98893569 C T STPG2 Silent p.L265L 0.32 TCGA-MI-A75H-01 4 98902423 98902423 T A STPG2 Missense_Mutation p.N220I 0.34 deleterious(0) probably_damaging(0.966) TCGA-MI-A75H-01 5 102612689 102612689 A T C5orf30 3'UTR 0.32 TCGA-MI-A75H-01 5 140242717 140242717 T A AC005609.1 Missense_Mutation p.R87W 0.47 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-MI-A75H-01 5 149677632 149677632 A G ARSI Silent p.G285G 0.41 TCGA-MI-A75H-01 5 161118965 161118965 C A GABRA6 Missense_Mutation p.T282N 0.36 deleterious(0) probably_damaging(0.989) TCGA-MI-A75H-01 5 170160865 170160865 T C KCNIP1 Missense_Mutation p.I200T 0.24 deleterious(0.01) benign(0.228) TCGA-MI-A75H-01 5 177637219 177637219 G T HNRNPAB Missense_Mutation p.G292C 0.37 deleterious(0.01) unknown(0) TCGA-MI-A75H-01 5 37351407 37351407 T C NUP155 Missense_Mutation p.D203G 0.32 deleterious(0) probably_damaging(0.964) TCGA-MI-A75H-01 5 96232185 96232185 T C ERAP2 Missense_Mutation p.F450L 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-MI-A75H-01 6 13978832 13978832 G A RNF182 3'UTR 0.17 TCGA-MI-A75H-01 6 170114882 170114882 G T PHF10 Silent p.V250V 0.49 TCGA-MI-A75H-01 6 31606829 31606829 C A BAG6 3'UTR 0.21 TCGA-MI-A75H-01 6 41121665 41121665 G A TREML1 Silent p.R69R 0.04 TCGA-MI-A75H-01 6 57033397 57033397 T C ZNF451 3'UTR 0.19 TCGA-MI-A75H-01 7 108112747 108112747 A T PNPLA8 3'UTR 0.38 TCGA-MI-A75H-01 7 12375836 12375836 C A VWDE Missense_Mutation p.G1529C 0.28 deleterious(0) probably_damaging(0.998) TCGA-MI-A75H-01 7 150440117 150440117 T C GIMAP5 Missense_Mutation p.F297S 0.23 tolerated(0.08) benign(0.035) TCGA-MI-A75H-01 7 151860694 151860694 T G KMT2C Missense_Mutation p.H3323P 0.35 possibly_damaging(0.616) TCGA-MI-A75H-01 7 154593130 154593130 A T DPP6 Silent p.G455G 0.21 TCGA-MI-A75H-01 7 21934278 21934280 CAG - DNAH11 In_Frame_Del p.P4270_E4271delinsQ 0.31 TCGA-MI-A75H-01 7 29160618 29160618 A G CPVL Silent p.C20C 0.34 TCGA-MI-A75H-01 7 31377865 31377865 C T NEUROD6 3'UTR 0.33 TCGA-MI-A75H-01 7 34192707 34192707 C T BMPER Missense_Mutation p.T627I 0.37 deleterious(0.02) benign(0.006) TCGA-MI-A75H-01 7 38670937 38670937 C A AMPH Missense_Mutation p.K5N 0.33 tolerated(0.14) possibly_damaging(0.816) TCGA-MI-A75H-01 7 40027408 40027408 A C CDK13 Silent p.A474A 0.39 TCGA-MI-A75H-01 7 44084316 44084316 G T DBNL 5'UTR 0.47 TCGA-MI-A75H-01 7 44281927 44281927 C A CAMK2B Nonsense_Mutation p.E237* 0.43 TCGA-MI-A75H-01 7 48278858 48278858 G T ABCA13 Missense_Mutation p.L306F 0.32 probably_damaging(0.929) TCGA-MI-A75H-01 7 50595913 50595913 A T DDC Missense_Mutation p.D212E 0.36 deleterious(0.03) possibly_damaging(0.89) TCGA-MI-A75H-01 7 64151634 64151634 G C ZNF107 5'UTR 0.54 TCGA-MI-A75H-01 7 6777095 6777095 G T PMS2CL RNA 0.38 TCGA-MI-A75H-01 7 75368213 75368213 T G HIP1 Missense_Mutation p.K9T 0.38 deleterious_low_confidence(0.01) benign(0.193) TCGA-MI-A75H-01 8 142505463 142505463 T A MROH5 Missense_Mutation p.H93L 0.62 deleterious(0) possibly_damaging(0.472) TCGA-MI-A75H-01 8 145780976 145780976 A T ARHGAP39 Missense_Mutation p.D188E 0.21 tolerated(0.3) possibly_damaging(0.539) TCGA-MI-A75H-01 8 28575255 28575255 C T EXTL3 Missense_Mutation p.A560V 0.47 tolerated(0.34) benign(0.003) TCGA-MI-A75H-01 8 51617237 51617237 G A SNTG1 Silent p.V372V 0.17 TCGA-MI-A75H-01 8 70551048 70551048 C T SULF1 Nonsense_Mutation p.Q836* 0.21 TCGA-MI-A75H-01 8 73944310 73944310 A G TERF1 Silent p.Q327Q 0.59 TCGA-MI-A75H-01 9 128064751 128064751 G T GAPVD1 Missense_Mutation p.R225S 0.46 deleterious(0) possibly_damaging(0.487) TCGA-MI-A75H-01 9 139735128 139735128 G C RABL6 3'UTR 0.36 TCGA-MI-A75H-01 9 140056377 140056377 T C GRIN1 Missense_Mutation p.V511A 0.19 tolerated(0.23) benign(0.332) TCGA-MI-A75H-01 9 19058467 19058467 C A HAUS6 Missense_Mutation p.K766N 0.24 tolerated(0.44) benign(0.003) TCGA-MI-A75H-01 9 21440487 21440487 A C IFNA1 5'UTR 0.38 TCGA-MI-A75H-01 9 2718181 2718181 G A KCNV2 Missense_Mutation p.E148K 0.33 deleterious(0) probably_damaging(0.996) TCGA-MI-A75H-01 9 32631204 32631204 G T TAF1L Nonsense_Mutation p.Y1458* 0.36 TCGA-MI-A75H-01 9 34552230 34552230 G T CNTFR Silent p.P349P 0.53 TCGA-MI-A75H-01 9 6330365 6330365 A T TPD52L3 3'UTR 0.31 TCGA-MI-A75H-01 9 77442785 77442785 C T TRPM6 Silent p.L250L 0.33 TCGA-MI-A75H-01 X 155003829 155003829 T C SPRY3 Missense_Mutation p.L99P 0.38 deleterious(0) probably_damaging(1) TCGA-MI-A75H-01 X 155233487 155233487 C T IL9R Silent p.L134L 0.31 TCGA-MI-A75H-01 X 48125757 48125757 C A SSX1 Missense_Mutation p.L168M 0.78 deleterious(0) probably_damaging(1) TCGA-MI-A75H-01 X 65408258 65408258 T C HEPH Missense_Mutation p.L282P 0.66 deleterious(0) probably_damaging(0.999) TCGA-MI-A75H-01 X 72434298 72434298 A G NAP1L2 Missense_Mutation p.S11P 0.73 deleterious_low_confidence(0.05) benign(0.002) TCGA-MI-A75H-01 X 86877345 86877345 G T KLHL4 Silent p.V353V 0.68 TCGA-MI-A75I-01 10 102783278 102783278 G A PDZD7 Silent p.L153L 0.45 TCGA-MI-A75I-01 10 120801558 120801558 G A EIF3A Silent p.P1158P 0.45 TCGA-MI-A75I-01 10 126631850 126631850 A T ZRANB1 Missense_Mutation p.D263V 0.33 deleterious(0) probably_damaging(1) TCGA-MI-A75I-01 10 128118392 128118392 C T C10orf90 Missense_Mutation p.C642Y 0.36 tolerated(0.85) benign(0.004) TCGA-MI-A75I-01 10 22678098 22678099 CT G SPAG6 Frame_Shift_Del p.L288Gfs*2 0.28 TCGA-MI-A75I-01 10 329266 329266 G T DIP2C Missense_Mutation p.R1414S 0.38 deleterious(0.02) probably_damaging(0.995) TCGA-MI-A75I-01 10 55755371 55755371 A T PCDH15 Intron 0.34 TCGA-MI-A75I-01 10 69750894 69750894 T A HERC4 Intron 0.38 TCGA-MI-A75I-01 10 76865447 76865447 G A DUSP13 Intron 0.07 TCGA-MI-A75I-01 10 93331 93331 T C TUBB8 Missense_Mutation p.Q334R 0.07 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-MI-A75I-01 10 97602202 97602202 C A ENTPD1 Missense_Mutation p.Q134K 0.39 tolerated(0.22) benign(0.012) TCGA-MI-A75I-01 11 105797567 105797567 C G GRIA4 Missense_Mutation p.R650G 0.38 deleterious(0) probably_damaging(0.999) TCGA-MI-A75I-01 11 125267956 125267956 C G PKNOX2 Missense_Mutation p.Q196E 0.33 tolerated(0.31) benign(0.039) TCGA-MI-A75I-01 11 1265754 1265754 C A MUC5B Silent p.T2548T 0.31 TCGA-MI-A75I-01 11 132205003 132205003 T A NTM Missense_Mutation p.L344Q 0.53 deleterious(0.04) possibly_damaging(0.726) TCGA-MI-A75I-01 11 132526997 132526997 G - OPCML Frame_Shift_Del p.H129Tfs*2 0.21 TCGA-MI-A75I-01 11 134076627 134076627 C A NCAPD3 Missense_Mutation p.V295F 0.55 deleterious(0.02) benign(0.181) TCGA-MI-A75I-01 11 1619366 1619366 C T KRTAP5-2 Missense_Mutation p.G39S 0.25 unknown(0) TCGA-MI-A75I-01 11 1887904 1887904 T C LSP1 Missense_Mutation p.V67A 0.31 deleterious_low_confidence(0) unknown(0) TCGA-MI-A75I-01 11 56085886 56085886 A G OR8K3 Missense_Mutation p.Y35C 0.52 deleterious_low_confidence(0) possibly_damaging(0.574) TCGA-MI-A75I-01 11 78369307 78369307 C G TENM4 Silent p.A2702A 0.37 TCGA-MI-A75I-01 11 92616284 92616284 T C FAT3 Missense_Mutation p.V4221A 0.29 benign(0) TCGA-MI-A75I-01 11 94231823 94231823 C T ANKRD49 3'UTR 0.32 TCGA-MI-A75I-01 12 103762676 103762676 A T C12orf42 Missense_Mutation p.L83Q 0.30 deleterious(0) probably_damaging(0.991) TCGA-MI-A75I-01 12 108589818 108589818 T C WSCD2 Missense_Mutation p.M70T 0.38 tolerated(0.68) benign(0) TCGA-MI-A75I-01 12 29628110 29628110 C A OVCH1 Missense_Mutation p.G495V 0.30 tolerated(0.08) probably_damaging(0.917) TCGA-MI-A75I-01 12 29628111 29628111 C A OVCH1 Nonsense_Mutation p.G495* 0.30 TCGA-MI-A75I-01 12 40651100 40651100 G T LRRK2 Nonsense_Mutation p.E447* 0.42 TCGA-MI-A75I-01 12 49298898 49298898 T C CCDC65 Splice_Site p.X100_splice 0.49 TCGA-MI-A75I-01 12 54403335 54403335 T C HOXC8 Silent p.Y89Y 0.32 TCGA-MI-A75I-01 12 56868406 56868406 A G GLS2 Silent p.S382S 0.38 TCGA-MI-A75I-01 12 57603645 57603645 C T LRP1 Missense_Mutation p.P4145S 0.38 probably_damaging(0.982) TCGA-MI-A75I-01 12 68715374 68715374 G A MDM1 Missense_Mutation p.A279V 0.24 tolerated(0.21) possibly_damaging(0.624) TCGA-MI-A75I-01 12 8242584 8242584 A T NECAP1 Missense_Mutation p.T50S 0.41 deleterious(0.04) possibly_damaging(0.662) TCGA-MI-A75I-01 13 111090978 111090978 A C COL4A2 Missense_Mutation p.K292T 0.33 probably_damaging(0.996) TCGA-MI-A75I-01 13 21175874 21175874 A G IFT88 Silent p.T290T 0.30 TCGA-MI-A75I-01 13 97485041 97485041 C T HS6ST3 Silent p.T335T 0.06 TCGA-MI-A75I-01 14 105931048 105931048 C G MTA1 Missense_Mutation p.P461R 0.30 deleterious(0.04) possibly_damaging(0.894) TCGA-MI-A75I-01 14 106388399 106388399 G T KIAA0125 Splice_Site p.X105_splice 0.41 TCGA-MI-A75I-01 14 20979308 20979308 A T RNASE10 3'UTR 0.40 TCGA-MI-A75I-01 14 35492189 35492189 G C SRP54 Silent p.S410S 0.34 TCGA-MI-A75I-01 14 42356423 42356423 C A LRFN5 Silent p.R199R 0.33 TCGA-MI-A75I-01 14 51368576 51368576 T A ABHD12B Silent p.R270R 0.31 TCGA-MI-A75I-01 14 56233080 56233080 G T RP11-813I20.2 Intron 0.50 TCGA-MI-A75I-01 15 20658890 20658890 A T HERC2P3 RNA 0.15 TCGA-MI-A75I-01 15 24924606 24924606 C T NPAP1 3'UTR 0.26 TCGA-MI-A75I-01 15 30010589 30010589 C A TJP1 Nonsense_Mutation p.E1253* 0.32 TCGA-MI-A75I-01 15 48764821 48764821 G A FBN1 Silent p.L1421L 0.24 TCGA-MI-A75I-01 15 55912922 55912922 T C PRTG Missense_Mutation p.K1046R 0.32 tolerated(0.19) benign(0.06) TCGA-MI-A75I-01 15 79327481 79327481 A T RASGRF1 Missense_Mutation p.L317Q 0.50 deleterious(0) probably_damaging(0.998) TCGA-MI-A75I-01 15 79339166 79339166 A C RASGRF1 Missense_Mutation p.L267R 0.41 deleterious(0) probably_damaging(0.971) TCGA-MI-A75I-01 15 83795555 83795555 C T TM6SF1 Nonsense_Mutation p.Q253* 0.40 TCGA-MI-A75I-01 15 89453020 89453020 C T MFGE8 Intron 0.36 TCGA-MI-A75I-01 15 99678133 99678133 C A TTC23 3'UTR 0.40 TCGA-MI-A75I-01 16 20554485 20554485 G A ACSM2B Missense_Mutation p.R461W 0.31 deleterious(0) probably_damaging(0.999) TCGA-MI-A75I-01 16 2122984 2122984 G - TSC2 Frame_Shift_Del 0.35 TCGA-MI-A75I-01 16 25258229 25258229 C T ZKSCAN2 Missense_Mutation p.A430T 0.05 tolerated(0.54) possibly_damaging(0.744) TCGA-MI-A75I-01 16 27079001 27079001 G A C16orf82 RNA 0.67 TCGA-MI-A75I-01 16 55725901 55725901 C T SLC6A2 Silent p.P285P 0.57 TCGA-MI-A75I-01 16 65025685 65025685 G - CDH11 Frame_Shift_Del p.P266Qfs*22 0.44 TCGA-MI-A75I-01 16 65025686 65025686 G T CDH11 Missense_Mutation p.P266T 0.45 deleterious(0) possibly_damaging(0.865) TCGA-MI-A75I-01 16 85813311 85813311 T A EMC8 3'UTR 0.38 TCGA-MI-A75I-01 17 26943792 26943792 A C KIAA0100 Intron 0.29 TCGA-MI-A75I-01 17 27420004 27420004 A C MYO18A Missense_Mutation p.F1648V 0.26 tolerated(0.38) benign(0.001) TCGA-MI-A75I-01 17 3779538 3779538 G T CAMKK1 Silent p.S363S 0.64 TCGA-MI-A75I-01 17 46685380 46685380 G A HOXB7 Missense_Mutation p.R160C 0.23 deleterious(0) probably_damaging(0.989) TCGA-MI-A75I-01 17 4905414 4905414 G A KIF1C Missense_Mutation p.V142M 0.45 deleterious(0.03) probably_damaging(0.98) TCGA-MI-A75I-01 17 56348028 56348028 C G MPO Missense_Mutation p.E743Q 0.23 tolerated(0.14) benign(0) TCGA-MI-A75I-01 17 59485645 59485645 C T TBX2 Silent p.T639T 0.29 TCGA-MI-A75I-01 17 7578457 7578457 C T TP53 Missense_Mutation p.R158H 0.42 tolerated(0.1) benign(0.438) TCGA-MI-A75I-01 17 80040839 80040839 C T FASN Silent p.Q1906Q 0.28 TCGA-MI-A75I-01 17 80851463 80851463 A T TBCD Missense_Mutation p.D535V 0.54 deleterious(0.01) benign(0.242) TCGA-MI-A75I-01 18 30554599 30554599 A T CCDC178 Missense_Mutation p.F812Y 0.49 deleterious(0) probably_damaging(0.976) TCGA-MI-A75I-01 18 7033066 7033066 T A LAMA1 Missense_Mutation p.S694C 0.27 deleterious(0.05) probably_damaging(0.928) TCGA-MI-A75I-01 18 9886946 9886946 T C TXNDC2 Missense_Mutation p.I157T 0.39 tolerated(0.27) probably_damaging(0.94) TCGA-MI-A75I-01 19 11598499 11598499 G A ZNF653 Missense_Mutation p.P260L 0.37 deleterious(0.02) benign(0.089) TCGA-MI-A75I-01 19 13365942 13365942 C T CACNA1A Missense_Mutation p.M1574I 0.36 benign(0.003) TCGA-MI-A75I-01 19 14581098 14581098 A T PKN1 Missense_Mutation p.Y812F 0.22 tolerated(0.45) benign(0.121) TCGA-MI-A75I-01 19 16601349 16601349 C T CALR3 Missense_Mutation p.A76T 0.32 deleterious(0.01) probably_damaging(1) TCGA-MI-A75I-01 19 2717599 2717599 G C DIRAS1 Missense_Mutation p.P69R 0.36 tolerated(0.1) probably_damaging(1) TCGA-MI-A75I-01 19 35786342 35786342 T C MAG Missense_Mutation p.W11R 0.38 tolerated(0.5) benign(0.36) TCGA-MI-A75I-01 19 36142167 36142167 A G COX6B1 Missense_Mutation p.K8E 0.23 tolerated(0.06) benign(0.259) TCGA-MI-A75I-01 19 36939783 36939783 T A ZNF566 3'UTR 0.38 TCGA-MI-A75I-01 19 38056846 38056846 T A ZNF571 Missense_Mutation p.N162Y 0.34 deleterious(0) possibly_damaging(0.601) TCGA-MI-A75I-01 19 42713936 42713936 T A DEDD2 Nonsense_Mutation p.R169* 0.35 TCGA-MI-A75I-01 19 53352366 53352366 T G ZNF468 Missense_Mutation p.E39A 0.46 deleterious(0) possibly_damaging(0.874) TCGA-MI-A75I-01 19 55179474 55179474 A T LILRB4 3'UTR 0.37 TCGA-MI-A75I-01 19 55284949 55284949 G A KIR2DL1 Missense_Mutation p.G79R 0.86 tolerated(0.16) probably_damaging(1) TCGA-MI-A75I-01 19 58718123 58718123 C G ZNF274 Missense_Mutation p.P98R 0.41 deleterious(0.03) possibly_damaging(0.48) TCGA-MI-A75I-01 19 9525003 9525003 C T ZNF266 Missense_Mutation p.A200T 0.35 tolerated(0.5) benign(0.003) TCGA-MI-A75I-01 1 101185394 101185394 T C VCAM1 5'UTR 0.32 TCGA-MI-A75I-01 1 11574466 11574466 G T PTCHD2 Missense_Mutation p.G446W 0.30 deleterious(0) probably_damaging(0.995) TCGA-MI-A75I-01 1 120839624 120839624 G A FAM72B 5'UTR 0.06 TCGA-MI-A75I-01 1 158325807 158325807 C A CD1E Silent p.T272T 0.27 TCGA-MI-A75I-01 1 161132173 161132173 C T USP21 Silent p.L258L 0.33 TCGA-MI-A75I-01 1 161207865 161207865 A G NR1I3 5'UTR 0.37 TCGA-MI-A75I-01 1 161207867 161207867 A C NR1I3 5'UTR 0.36 TCGA-MI-A75I-01 1 161762113 161762114 - A ATF6 Frame_Shift_Ins p.G230Rfs*38 0.30 TCGA-MI-A75I-01 1 174957891 174957891 C A RABGAP1L Missense_Mutation p.D280E 0.41 tolerated(0.95) benign(0.166) TCGA-MI-A75I-01 1 17690059 17690059 C A PADI4 Missense_Mutation p.P601T 0.45 deleterious(0) probably_damaging(1) TCGA-MI-A75I-01 1 197887089 197887089 C T LHX9 Missense_Mutation p.R46C 0.27 tolerated_low_confidence(0.06) possibly_damaging(0.676) TCGA-MI-A75I-01 1 201817700 201817700 T C IPO9 Silent p.H164H 0.24 TCGA-MI-A75I-01 1 204210871 204210871 G A PLEKHA6 Silent p.I748I 0.33 TCGA-MI-A75I-01 1 205041085 205041085 G T CNTN2 Missense_Mutation p.W852L 0.40 deleterious(0) probably_damaging(1) TCGA-MI-A75I-01 1 207644213 207644213 C G CR2 Missense_Mutation p.Q452E 0.24 deleterious(0.02) benign(0.026) TCGA-MI-A75I-01 1 215259976 215259976 C G KCNK2 Silent p.S104S 0.25 TCGA-MI-A75I-01 1 218607497 218607497 A T TGFB2 Missense_Mutation p.E223V 0.44 tolerated(0.18) possibly_damaging(0.877) TCGA-MI-A75I-01 1 242271083 242271083 T A PLD5 Nonsense_Mutation p.R377* 0.38 TCGA-MI-A75I-01 1 26227524 26227524 C A STMN1 Intron 0.36 TCGA-MI-A75I-01 1 45292375 45292375 C T PTCH2 Missense_Mutation p.A921T 0.19 deleterious(0.05) benign(0.201) TCGA-MI-A75I-01 1 62341008 62341008 A C INADL Missense_Mutation p.N977H 0.37 tolerated(0.51) benign(0.002) TCGA-MI-A75I-01 1 63788839 63788839 A G FOXD3 Missense_Mutation p.E37G 0.39 tolerated_low_confidence(0.17) benign(0.403) TCGA-MI-A75I-01 1 75608866 75608866 A G LHX8 Silent p.R151R 0.27 TCGA-MI-A75I-01 1 85121516 85121516 T A SSX2IP Missense_Mutation p.E463V 0.39 deleterious(0) possibly_damaging(0.862) TCGA-MI-A75I-01 1 86913417 86913417 A T CLCA2 Missense_Mutation p.E647V 0.29 tolerated(0.23) probably_damaging(0.979) TCGA-MI-A75I-01 1 87029375 87029375 C G CLCA4 Silent p.L160L 0.37 TCGA-MI-A75I-01 20 31967440 31967440 C G CDK5RAP1 Missense_Mutation p.E312Q 0.40 tolerated(0.13) benign(0.328) TCGA-MI-A75I-01 20 35627112 35627112 T C RBL1 3'UTR 0.33 TCGA-MI-A75I-01 20 47267445 47267445 G A PREX1 Missense_Mutation p.A935V 0.33 tolerated(0.05) benign(0.002) TCGA-MI-A75I-01 20 6057861 6057861 C T FERMT1 Missense_Mutation p.D665N 0.43 tolerated(0.75) benign(0.334) TCGA-MI-A75I-01 20 8862290 8862290 G T PLCB1 Nonsense_Mutation p.E1149* 0.06 TCGA-MI-A75I-01 20 9546703 9546703 A G PAK7 Missense_Mutation p.V440A 0.30 deleterious(0) probably_damaging(0.988) TCGA-MI-A75I-01 21 11049620 11049620 C T BAGE2 Intron 0.06 TCGA-MI-A75I-01 21 17250204 17250204 C T USP25 Silent p.V963V 0.35 TCGA-MI-A75I-01 21 28210528 28210528 C T ADAMTS1 Silent p.Q758Q 0.44 TCGA-MI-A75I-01 21 43332526 43332526 C A C2CD2 Missense_Mutation p.V290L 0.40 tolerated(0.64) benign(0.041) TCGA-MI-A75I-01 22 18020263 18020264 - G CECR2 Frame_Shift_Ins p.W533Lfs*124 0.28 TCGA-MI-A75I-01 22 30824670 30824670 G A RP4-539M6.19 3'UTR 0.53 TCGA-MI-A75I-01 22 39388141 39388141 G - APOBEC3B Frame_Shift_Del p.A375Pfs*23 0.20 TCGA-MI-A75I-01 22 39388605 39388606 - AAAA APOBEC3B 3'UTR 0.13 TCGA-MI-A75I-01 22 51143398 51143398 G T SHANK3 Missense_Mutation p.G651W 0.07 probably_damaging(1) TCGA-MI-A75I-01 2 11922631 11922631 G C LPIN1 Missense_Mutation p.R470T 0.32 deleterious(0.01) benign(0.062) TCGA-MI-A75I-01 2 121747847 121747847 A T GLI2 Missense_Mutation p.M1453L 0.38 deleterious(0.01) possibly_damaging(0.651) TCGA-MI-A75I-01 2 131520150 131520150 A G AMER3 Missense_Mutation p.N169D 0.27 deleterious(0.01) possibly_damaging(0.859) TCGA-MI-A75I-01 2 153471456 153471456 C A FMNL2 Missense_Mutation p.A385D 0.43 possibly_damaging(0.655) TCGA-MI-A75I-01 2 158177872 158177872 A G ERMN Missense_Mutation p.S269P 0.04 deleterious(0) probably_damaging(0.973) TCGA-MI-A75I-01 2 162273138 162273138 G A TBR1 Missense_Mutation p.D73N 0.47 deleterious(0.04) probably_damaging(0.956) TCGA-MI-A75I-01 2 170003385 170003385 G T LRP2 Missense_Mutation p.F4225L 0.33 benign(0.01) TCGA-MI-A75I-01 2 179479034 179479034 T C TTN Missense_Mutation p.T16364A 0.31 TCGA-MI-A75I-01 2 179489420 179489420 T C TTN Missense_Mutation p.T14863A 0.38 TCGA-MI-A75I-01 2 179610184 179610184 G T TTN Intron 0.37 TCGA-MI-A75I-01 2 198266711 198266711 T G SF3B1 Missense_Mutation p.K741Q 0.35 deleterious(0.01) probably_damaging(0.992) TCGA-MI-A75I-01 2 220336992 220336992 T C SPEG Silent p.A1293A 0.38 TCGA-MI-A75I-01 2 24011501 24011501 C A ATAD2B Missense_Mutation p.R886I 0.37 tolerated(0.35) possibly_damaging(0.584) TCGA-MI-A75I-01 2 242148731 242148731 T C ANO7 Missense_Mutation p.V424A 0.21 deleterious(0) probably_damaging(0.971) TCGA-MI-A75I-01 2 242590731 242590731 G A ATG4B Silent p.R55R 0.29 TCGA-MI-A75I-01 2 25384341 25384341 G A POMC Missense_Mutation p.S138F 0.55 deleterious(0) probably_damaging(0.999) TCGA-MI-A75I-01 2 7003625 7003625 C T CMPK2 Missense_Mutation p.V254I 0.32 deleterious(0.05) benign(0.395) TCGA-MI-A75I-01 2 85770059 85770059 T C MAT2A Silent p.S329S 0.32 TCGA-MI-A75I-01 3 111799967 111799967 A G TMPRSS7 3'UTR 0.45 TCGA-MI-A75I-01 3 118647489 118647489 G A IGSF11 Silent p.T97T 0.29 TCGA-MI-A75I-01 3 119885965 119885965 C A GPR156 Missense_Mutation p.G787W 0.39 deleterious(0.03) benign(0.006) TCGA-MI-A75I-01 3 179310438 179310438 A C MRPL47 Missense_Mutation p.F208C 0.35 deleterious(0) probably_damaging(0.957) TCGA-MI-A75I-01 3 184299425 184299425 G T EPHB3 3'UTR 0.36 TCGA-MI-A75I-01 3 195596397 195596397 C T TNK2 Missense_Mutation p.R583H 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-MI-A75I-01 3 197670818 197670818 G A IQCG Missense_Mutation p.P38L 0.40 tolerated_low_confidence(0.26) benign(0.05) TCGA-MI-A75I-01 3 33638205 33638205 T C CLASP2 Missense_Mutation p.D650G 0.37 tolerated(0.21) benign(0.293) TCGA-MI-A75I-01 3 49153162 49153162 C A USP19 Missense_Mutation p.A561S 0.33 tolerated(0.76) benign(0.038) TCGA-MI-A75I-01 3 49400013 49400013 G A RHOA Silent p.P108P 0.37 TCGA-MI-A75I-01 3 51990739 51990739 C A GPR62 Silent p.P357P 0.34 TCGA-MI-A75I-01 3 97185271 97185271 A C EPHA6 Intron 0.44 TCGA-MI-A75I-01 3 97736568 97736568 T A GABRR3 Splice_Site 0.33 TCGA-MI-A75I-01 4 100205700 100205700 G T ADH1A Missense_Mutation p.F141L 0.23 tolerated(0.07) possibly_damaging(0.497) TCGA-MI-A75I-01 4 100532577 100532577 G A MTTP Silent p.Q652Q 0.38 TCGA-MI-A75I-01 4 100870052 100870052 G A H2AFZ Missense_Mutation p.R81C 0.30 deleterious(0.03) benign(0.081) TCGA-MI-A75I-01 4 13610294 13610294 T C BOD1L1 Splice_Site p.X535_splice 0.43 TCGA-MI-A75I-01 4 156724875 156724875 G T GUCY1B3 Nonsense_Mutation p.E505* 0.37 TCGA-MI-A75I-01 4 158281153 158281153 T C GRIA2 Missense_Mutation p.S717P 0.26 deleterious(0) probably_damaging(0.956) TCGA-MI-A75I-01 4 159956201 159956201 T G C4orf45 Missense_Mutation p.K16N 0.37 deleterious(0.04) benign(0.342) TCGA-MI-A75I-01 4 186366160 186366160 C A C4orf47 Missense_Mutation p.H253N 0.05 deleterious(0) probably_damaging(0.972) TCGA-MI-A75I-01 4 3951245 3951245 T A FAM86EP Intron 0.20 TCGA-MI-A75I-01 4 55963911 55963911 G C KDR Silent p.A844A 0.30 TCGA-MI-A75I-01 4 91645123 91645123 A T CCSER1 Missense_Mutation p.E664V 0.39 deleterious(0) probably_damaging(0.998) TCGA-MI-A75I-01 5 114506870 114506870 G A TRIM36 Intron 0.42 TCGA-MI-A75I-01 5 134914414 134914414 G A CXCL14 Missense_Mutation p.R31C 0.62 deleterious_low_confidence(0.05) benign(0.146) TCGA-MI-A75I-01 5 140215935 140215935 A T PCDHA7 Missense_Mutation p.E656V 0.49 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-MI-A75I-01 5 148996303 148996303 A G ARHGEF37 Missense_Mutation p.N211S 0.22 deleterious(0) probably_damaging(0.971) TCGA-MI-A75I-01 5 167645700 167645700 C G TENM2 Missense_Mutation p.H1602D 0.19 deleterious(0) probably_damaging(0.953) TCGA-MI-A75I-01 5 169310676 169310676 G A FAM196B Missense_Mutation p.P76L 0.32 tolerated(1) benign(0.002) TCGA-MI-A75I-01 5 177649437 177649437 G A PHYKPL Silent p.N282N 0.46 TCGA-MI-A75I-01 5 442609 442609 G A C5orf55 Missense_Mutation p.S110L 0.42 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-MI-A75I-01 5 54528358 54528358 C A CCNO Missense_Mutation p.R133L 0.50 deleterious(0.03) probably_damaging(1) TCGA-MI-A75I-01 5 80640019 80640019 A C ACOT12 Missense_Mutation p.Y314D 0.26 deleterious(0) probably_damaging(0.982) TCGA-MI-A75I-01 6 106536266 106536266 A T PRDM1 Missense_Mutation p.Q78L 0.44 deleterious(0.01) possibly_damaging(0.481) TCGA-MI-A75I-01 6 135514982 135514982 A T MYB Missense_Mutation p.S257C 0.08 deleterious(0.03) possibly_damaging(0.646) TCGA-MI-A75I-01 6 15496837 15496837 A G JARID2 Missense_Mutation p.K461E 0.19 tolerated_low_confidence(0.07) possibly_damaging(0.82) TCGA-MI-A75I-01 6 160163131 160163131 A G WTAP Missense_Mutation p.Y33C 0.40 tolerated(0.13) possibly_damaging(0.62) TCGA-MI-A75I-01 6 26409957 26409957 A G BTN3A1 Silent p.T304T 0.15 TCGA-MI-A75I-01 6 29572726 29572726 A G GABBR1 Missense_Mutation p.S827P 0.36 tolerated(0.09) probably_damaging(0.928) TCGA-MI-A75I-01 6 43214466 43214466 T C TTBK1 Missense_Mutation p.I23T 0.10 probably_damaging(0.993) TCGA-MI-A75I-01 6 46682256 46682256 A T PLA2G7 Silent p.P137P 0.19 TCGA-MI-A75I-01 6 71004221 71004221 C A COL9A1 Silent p.T115T 0.57 TCGA-MI-A75I-01 6 7571705 7571705 A T DSP Silent p.S597S 0.24 TCGA-MI-A75I-01 6 96656812 96656812 T C FUT9 3'UTR 0.59 TCGA-MI-A75I-01 7 100683826 100683826 A T MUC17 Missense_Mutation p.E3043D 0.43 possibly_damaging(0.615) TCGA-MI-A75I-01 7 134850468 134850468 C T TMEM140 3'UTR 0.24 TCGA-MI-A75I-01 7 140221816 140221816 A G DENND2A Missense_Mutation p.F917S 0.34 tolerated(0.15) possibly_damaging(0.461) TCGA-MI-A75I-01 7 14741336 14741336 G A DGKB Silent p.D162D 0.34 TCGA-MI-A75I-01 7 148876417 148876417 T C ZNF398 Missense_Mutation p.C485R 0.29 deleterious(0) probably_damaging(1) TCGA-MI-A75I-01 7 150817090 150817090 G T AGAP3 Missense_Mutation p.G329V 0.35 tolerated(0.08) benign(0.003) TCGA-MI-A75I-01 7 17379497 17379497 A G AHR Missense_Mutation p.Q683R 0.37 deleterious_low_confidence(0) benign(0.013) TCGA-MI-A75I-01 7 23825118 23825118 A G STK31 Missense_Mutation p.M724V 0.23 tolerated(0.53) benign(0.002) TCGA-MI-A75I-01 7 34981498 34981498 T C DPY19L1 Splice_Site p.X451_splice 0.33 TCGA-MI-A75I-01 7 38457550 38457550 C A AMPH Missense_Mutation p.A425S 0.36 tolerated(0.17) benign(0.037) TCGA-MI-A75I-01 7 4854972 4854972 G C RADIL Missense_Mutation p.H692Q 0.35 tolerated(1) benign(0.003) TCGA-MI-A75I-01 7 79082460 79082460 T G MAGI2 Missense_Mutation p.K59N 0.27 tolerated(0.09) probably_damaging(0.998) TCGA-MI-A75I-01 7 91669986 91669986 A C AKAP9 Splice_Site p.X1565_splice 0.39 TCGA-MI-A75I-01 7 92848433 92848433 C A HEPACAM2 Missense_Mutation p.K137N 0.42 tolerated(0.07) probably_damaging(0.924) TCGA-MI-A75I-01 7 94298614 94298614 A G PEG10 3'UTR 0.29 TCGA-MI-A75I-01 8 113314168 113314168 G T CSMD3 Missense_Mutation p.P2765H 0.16 deleterious(0) possibly_damaging(0.828) TCGA-MI-A75I-01 8 142229096 142229096 C A SLC45A4 Missense_Mutation p.G164W 0.16 deleterious(0) probably_damaging(0.998) TCGA-MI-A75I-01 8 142451260 142451260 T A CTD-3064M3.7 3'Flank 0.25 TCGA-MI-A75I-01 8 142489405 142489405 G A MROH5 3'UTR 0.32 TCGA-MI-A75I-01 8 143695326 143695326 C G ARC Missense_Mutation p.A103P 0.17 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-MI-A75I-01 8 48715984 48715984 T G PRKDC Silent p.R3268R 0.14 TCGA-MI-A75I-01 8 55534100 55534100 C A RP1 Missense_Mutation p.Q192K 0.50 tolerated(0.07) benign(0.097) TCGA-MI-A75I-01 8 68062027 68062027 A G CSPP1 Missense_Mutation p.N657S 0.05 tolerated(0.09) benign(0.343) TCGA-MI-A75I-01 8 86048194 86048194 A G LRRCC1 Silent p.Q775Q 0.17 TCGA-MI-A75I-01 8 89053953 89053953 T A MMP16 Silent p.G520G 0.43 TCGA-MI-A75I-01 8 94935964 94935964 A T PDP1 3'UTR 0.39 TCGA-MI-A75I-01 9 104171388 104171388 G C ZNF189 Missense_Mutation p.Q446H 0.12 tolerated(1) probably_damaging(0.948) TCGA-MI-A75I-01 9 140391674 140391674 C A PNPLA7 Missense_Mutation p.A660S 0.55 deleterious(0) possibly_damaging(0.46) TCGA-MI-A75I-01 9 35957695 35957695 G A OR2S2 Missense_Mutation p.S134F 0.14 deleterious(0) benign(0.258) TCGA-MI-A75I-01 9 36122844 36122844 A G RECK Silent p.A906A 0.49 TCGA-MI-A75I-01 9 77397736 77397736 C G TRPM6 Missense_Mutation p.A985P 0.64 deleterious(0.01) probably_damaging(1) TCGA-MI-A75I-01 X 109695556 109695556 A G RGAG1 Missense_Mutation p.T571A 0.09 tolerated(1) benign(0.001) TCGA-MI-A75I-01 X 115567878 115567878 A G SLC6A14 Translation_Start_Site p.M1? 0.14 tolerated_low_confidence(0.06) benign(0.021) TCGA-MI-A75I-01 X 122561855 122561855 C T GRIA3 Silent p.S647S 0.07 TCGA-MI-A75I-01 X 134948145 134948145 T A CT45A5 Silent p.T60T 0.12 TCGA-MI-A75I-01 X 148072845 148072845 G C AFF2 Missense_Mutation p.D1307H 0.76 deleterious(0.01) probably_damaging(0.995) TCGA-MI-A75I-01 X 153698841 153698841 C A PLXNA3 Missense_Mutation p.H1681Q 0.73 deleterious(0) probably_damaging(0.999) TCGA-MI-A75I-01 X 30260451 30260451 C A MAGEB4 Missense_Mutation p.P67T 0.73 tolerated(0.17) benign(0.117) TCGA-MI-A75I-01 X 44870266 44870266 T G KDM6A Splice_Site p.X148_splice 0.64 TCGA-MI-A75I-01 X 69595074 69595074 A G KIF4A Missense_Mutation p.K600R 0.75 tolerated(0.1) benign(0.071) TCGA-MI-A75I-01 X 70836903 70836903 A T CXCR3 Missense_Mutation p.L187H 0.67 deleterious(0) possibly_damaging(0.557) TCGA-MI-A75I-01 X 79283541 79283541 T G TBX22 Silent p.T305T 0.15 TCGA-MI-A75I-01 Y 15024659 15024659 G T DDX3Y Missense_Mutation p.S101I 0.76 tolerated(0.19) benign(0.017) TCGA-MI-A75I-01 Y 16941900 16941900 A G NLGN4Y Missense_Mutation p.M368V 0.66 deleterious(0) possibly_damaging(0.624) TCGA-MR-A520-01 10 70775430 70775430 C T KIAA1279 Missense_Mutation p.S375F 0.38 deleterious(0.04) possibly_damaging(0.543) TCGA-MR-A520-01 10 92616999 92616999 T C HTR7 Missense_Mutation p.I144V 0.25 tolerated(0.4) benign(0.085) TCGA-MR-A520-01 10 95109596 95109596 T C MYOF Missense_Mutation p.N1351S 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-MR-A520-01 11 55944717 55944717 G C OR5J2 Missense_Mutation p.M208I 0.31 tolerated(1) benign(0.006) TCGA-MR-A520-01 11 92533065 92533065 C G FAT3 Missense_Mutation p.L2296V 0.08 possibly_damaging(0.859) TCGA-MR-A520-01 12 100774721 100774721 C G SLC17A8 Missense_Mutation p.P115R 0.28 tolerated(0.53) benign(0.128) TCGA-MR-A520-01 14 72054564 72054564 G C SIPA1L1 5'UTR 0.11 TCGA-MR-A520-01 14 94912673 94912673 C A SERPINA11 Silent p.L304L 0.06 TCGA-MR-A520-01 16 49671020 49671020 C T ZNF423 Silent p.L681L 0.31 TCGA-MR-A520-01 17 26726805 26726805 T G SARM1 3'UTR 0.08 TCGA-MR-A520-01 17 4726169 4726175 CCGTCAG - PLD2 3'UTR 0.25 TCGA-MR-A520-01 19 39804840 39804840 C T LRFN1 Silent p.A379A 0.43 TCGA-MR-A520-01 1 147380477 147380477 G A GJA8 Missense_Mutation p.S132N 0.20 tolerated(0.4) benign(0.004) TCGA-MR-A520-01 1 15988085 15988085 C G RSC1A1 Silent p.A574A 0.32 TCGA-MR-A520-01 1 20980769 20980769 G A DDOST Silent p.F264F 0.32 TCGA-MR-A520-01 1 27875598 27875598 G T AHDC1 Missense_Mutation p.A1010D 0.11 deleterious(0) possibly_damaging(0.82) TCGA-MR-A520-01 1 40129095 40129095 C T NT5C1A Missense_Mutation p.E149K 0.04 deleterious(0.03) probably_damaging(0.982) TCGA-MR-A520-01 1 55452005 55452005 G A TMEM61 Missense_Mutation p.G84D 0.29 deleterious(0) probably_damaging(0.982) TCGA-MR-A520-01 1 94654393 94654393 C T ARHGAP29 Missense_Mutation p.G561R 0.04 deleterious(0) probably_damaging(1) TCGA-MR-A520-01 1 9995639 9995639 G C LZIC Missense_Mutation p.L50V 0.37 tolerated(0.21) benign(0.015) TCGA-MR-A520-01 21 35821459 35821459 A C KCNE1 3'UTR 0.27 TCGA-MR-A520-01 22 26423563 26423563 G A MYO18B Silent p.T2541T 0.05 TCGA-MR-A520-01 22 51160334 51160334 A T SHANK3 Missense_Mutation p.E1374V 0.15 probably_damaging(0.997) TCGA-MR-A520-01 2 164467790 164467790 T C FIGN Silent p.E184E 0.10 TCGA-MR-A520-01 3 118649028 118649028 G A IGSF11 Silent p.S49S 0.03 TCGA-MR-A520-01 4 91230460 91230460 C T CCSER1 Missense_Mutation p.A342V 0.32 deleterious(0.05) probably_damaging(0.998) TCGA-MR-A520-01 7 128475630 128475630 T A FLNC Splice_Site p.X201_splice 0.05 TCGA-MR-A520-01 7 142460286 142460286 C T PRSS1 Silent p.D153D 0.07 TCGA-MR-A520-01 8 59852023 59852023 C T TOX Silent p.L83L 0.05 TCGA-MR-A520-01 8 92212905 92212905 T C LRRC69 Missense_Mutation p.I273T 0.30 deleterious(0) benign(0.305) TCGA-MR-A520-01 9 123914653 123914653 T A CNTRL Intron 0.44 TCGA-MR-A520-01 9 130551826 130551826 C T CDK9 3'UTR 0.40 TCGA-MR-A520-01 X 135122263 135122263 G C SLC9A6 Missense_Mutation p.G586R 0.62 tolerated(0.34) probably_damaging(0.994) TCGA-MR-A520-01 X 144909486 144909486 C A TMEM257 Silent p.P97P 0.55 TCGA-MR-A8JO-01 10 105110539 105110539 C T PCGF6 Silent p.E95E 0.08 TCGA-MR-A8JO-01 10 128936279 128936279 T A FAM196A Missense_Mutation p.E421V 0.07 deleterious(0) probably_damaging(0.999) TCGA-MR-A8JO-01 10 13698860 13698860 C T FRMD4A Missense_Mutation p.G910D 0.06 tolerated(0.08) probably_damaging(0.997) TCGA-MR-A8JO-01 11 19256542 19256542 C T E2F8 Missense_Mutation p.R172H 0.11 deleterious(0) probably_damaging(1) TCGA-MR-A8JO-01 11 56257944 56257944 G C OR5M8 Missense_Mutation p.I301M 0.06 deleterious(0.04) benign(0.007) TCGA-MR-A8JO-01 11 57310235 57310235 G A SMTNL1 Silent p.K58K 0.14 TCGA-MR-A8JO-01 11 59369293 59369293 T C OSBP Missense_Mutation p.M281V 0.17 tolerated(0.13) benign(0.001) TCGA-MR-A8JO-01 12 4385334 4385334 C A CCND2 Missense_Mutation p.A120E 0.10 deleterious(0.04) probably_damaging(0.997) TCGA-MR-A8JO-01 12 49483528 49483528 T C DHH 3'UTR 0.06 TCGA-MR-A8JO-01 13 33704163 33704163 T C STARD13 Silent p.T217T 0.19 TCGA-MR-A8JO-01 15 39874936 39874936 G A THBS1 Missense_Mutation p.V204I 0.13 tolerated(0.44) benign(0.001) TCGA-MR-A8JO-01 15 40758269 40758270 - T BAHD1 Frame_Shift_Ins p.L763Pfs*7 0.18 TCGA-MR-A8JO-01 17 36863263 36863263 A G MLLT6 Missense_Mutation p.Q57R 0.04 deleterious(0) unknown(0) TCGA-MR-A8JO-01 17 4113210 4113210 A G ANKFY1 Missense_Mutation p.V206A 0.09 deleterious(0) possibly_damaging(0.492) TCGA-MR-A8JO-01 17 58740434 58740434 G T PPM1D Nonsense_Mutation p.E447* 0.16 TCGA-MR-A8JO-01 17 60059776 60059776 G T MED13 Nonsense_Mutation p.C1196* 0.11 TCGA-MR-A8JO-01 17 60059777 60059777 C T MED13 Missense_Mutation p.C1196Y 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-MR-A8JO-01 17 6665519 6665519 G T XAF1 Missense_Mutation p.C156F 0.06 deleterious(0) probably_damaging(0.96) TCGA-MR-A8JO-01 17 8792534 8792534 C T PIK3R5 Missense_Mutation p.A273T 0.08 tolerated(0.18) benign(0.005) TCGA-MR-A8JO-01 19 57065959 57065959 T C ZFP28 Missense_Mutation p.I602T 0.15 tolerated(0.38) probably_damaging(0.971) TCGA-MR-A8JO-01 1 116940569 116940569 T C ATP1A1 Missense_Mutation p.L678P 0.16 deleterious(0.02) probably_damaging(0.997) TCGA-MR-A8JO-01 1 168274288 168274288 C T TBX19 Missense_Mutation p.A257V 0.15 tolerated(0.25) benign(0.218) TCGA-MR-A8JO-01 1 240976978 240976978 G C RGS7 Missense_Mutation p.P299R 0.04 deleterious(0.03) benign(0.28) TCGA-MR-A8JO-01 1 45111132 45111132 A G RNF220 Missense_Mutation p.K473E 0.23 tolerated(0.34) benign(0.08) TCGA-MR-A8JO-01 1 55521763 55521763 C T PCSK9 Silent p.A299A 0.04 TCGA-MR-A8JO-01 20 61981058 61981058 C T CHRNA4 Missense_Mutation p.E569K 0.09 deleterious(0.01) possibly_damaging(0.755) TCGA-MR-A8JO-01 2 136071142 136071142 T A ZRANB3 Missense_Mutation p.I295L 0.24 tolerated(1) benign(0) TCGA-MR-A8JO-01 2 179315872 179315872 C G PRKRA 5'UTR 0.15 TCGA-MR-A8JO-01 2 74643047 74643047 G T C2orf81 Missense_Mutation p.P89Q 0.06 deleterious(0) probably_damaging(1) TCGA-MR-A8JO-01 3 127774426 127774426 T C SEC61A1 Splice_Site p.X47_splice 0.05 TCGA-MR-A8JO-01 3 165504094 165504094 G - BCHE Frame_Shift_Del p.P508Qfs*22 0.20 TCGA-MR-A8JO-01 3 52550761 52550761 C A STAB1 Missense_Mutation p.S1447Y 0.20 deleterious(0.01) possibly_damaging(0.519) TCGA-MR-A8JO-01 4 121616413 121616413 A - PRDM5 Frame_Shift_Del p.F582Lfs*3 0.09 TCGA-MR-A8JO-01 4 40098980 40098980 A G N4BP2 Missense_Mutation p.N7S 0.11 tolerated(0.12) benign(0.063) TCGA-MR-A8JO-01 5 147477477 147477477 C G SPINK5 Missense_Mutation p.F310L 0.15 deleterious(0.04) benign(0.379) TCGA-MR-A8JO-01 5 52248303 52248303 A G ITGA1 3'UTR 0.12 TCGA-MR-A8JO-01 6 29599274 29599274 A T GABBR1 Missense_Mutation p.I63N 0.08 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-MR-A8JO-01 7 128524140 128524140 G A KCP RNA 0.08 TCGA-MR-A8JO-01 7 130067812 130067812 T C CEP41 Silent p.K27K 0.22 TCGA-MR-A8JO-01 7 154667656 154667656 G A DPP6 Missense_Mutation p.E642K 0.29 tolerated(0.76) benign(0.004) TCGA-MR-A8JO-01 7 154677362 154677362 G A DPP6 Missense_Mutation p.S718N 0.25 deleterious(0.01) possibly_damaging(0.727) TCGA-MR-A8JO-01 7 92157758 92157758 A T PEX1 5'UTR 0.11 TCGA-MR-A8JO-01 8 114449154 114449154 G A CSMD3 5'UTR 0.31 TCGA-MR-A8JO-01 9 137696861 137696861 C T COL5A1 Missense_Mutation p.P1052L 0.16 unknown(0) TCGA-MR-A8JO-01 X 41556128 41556128 G A GPR34 3'UTR 0.04 TCGA-NI-A4U2-01 10 102269156 102269156 G T SEC31B Missense_Mutation p.L106M 0.11 tolerated(0.21) possibly_damaging(0.459) TCGA-NI-A4U2-01 10 127760045 127760045 C A ADAM12 Splice_Site p.X444_splice 0.49 TCGA-NI-A4U2-01 10 127760046 127760046 C A ADAM12 Missense_Mutation p.E444D 0.49 tolerated(0.2) benign(0.162) TCGA-NI-A4U2-01 10 4879675 4879675 G A AKR1E2 Missense_Mutation p.G162R 0.38 deleterious(0) possibly_damaging(0.764) TCGA-NI-A4U2-01 11 10796824 10796824 C A CTR9 Missense_Mutation p.P986T 0.42 tolerated(0.49) benign(0.004) TCGA-NI-A4U2-01 11 1095258 1095258 G A MUC2 Silent p.K2026K 0.10 TCGA-NI-A4U2-01 11 110477435 110477435 G A ARHGAP20 Nonsense_Mutation p.R272* 0.19 TCGA-NI-A4U2-01 11 112064703 112064703 G T BCO2 Nonsense_Mutation p.E207* 0.23 TCGA-NI-A4U2-01 11 119228275 119228275 C T USP2 Silent p.R509R 0.39 TCGA-NI-A4U2-01 11 1888129 1888129 A G LSP1 Missense_Mutation p.N142S 0.50 tolerated_low_confidence(0.14) unknown(0) TCGA-NI-A4U2-01 11 36599128 36599128 T C RAG1 3'UTR 0.21 TCGA-NI-A4U2-01 11 3707425 3707425 C G NUP98 Splice_Site p.X1485_splice 0.34 TCGA-NI-A4U2-01 11 61666807 61666807 G C RAB3IL1 Missense_Mutation p.Q349E 0.07 deleterious(0) benign(0.257) TCGA-NI-A4U2-01 11 62648802 62648802 A G SLC3A2 Missense_Mutation p.I205V 0.36 tolerated(0.08) possibly_damaging(0.599) TCGA-NI-A4U2-01 11 9450696 9450696 T A IPO7 Missense_Mutation p.V515E 0.27 deleterious(0) probably_damaging(0.992) TCGA-NI-A4U2-01 12 121431983 121431983 A G HNF1A Missense_Mutation p.R244G 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-NI-A4U2-01 12 121434162 121434164 GTC TT HNF1A Frame_Shift_Del p.T354Rfs*10 0.19 TCGA-NI-A4U2-01 12 53898479 53898479 A G TARBP2 Intron 0.33 TCGA-NI-A4U2-01 12 55524128 55524128 T C OR9K2 Silent p.S192S 0.33 TCGA-NI-A4U2-01 12 56526103 56526103 C T ESYT1 Missense_Mutation p.S324F 0.30 tolerated(0.16) probably_damaging(0.986) TCGA-NI-A4U2-01 12 66531753 66531753 A C TMBIM4 Missense_Mutation p.V235G 0.32 tolerated(0.22) benign(0.066) TCGA-NI-A4U2-01 12 7945627 7945627 C T NANOG Missense_Mutation p.T78I 0.46 tolerated(0.08) benign(0.137) TCGA-NI-A4U2-01 12 85518184 85518184 G T LRRIQ1 Missense_Mutation p.K1298N 0.35 tolerated(0.1) possibly_damaging(0.717) TCGA-NI-A4U2-01 12 85518185 85518185 A T LRRIQ1 Nonsense_Mutation p.R1299* 0.36 TCGA-NI-A4U2-01 12 85554390 85554390 G C LRRIQ1 Splice_Site p.X1574_splice 0.43 TCGA-NI-A4U2-01 13 110437992 110437992 G A IRS2 Missense_Mutation p.R137C 0.31 deleterious(0) probably_damaging(0.978) TCGA-NI-A4U2-01 13 46638821 46638821 G A CPB2 Missense_Mutation p.T253I 0.34 deleterious(0) probably_damaging(0.988) TCGA-NI-A4U2-01 13 70293586 70293586 T C KLHL1 Missense_Mutation p.T644A 0.24 tolerated(0.14) benign(0.085) TCGA-NI-A4U2-01 13 76429476 76429476 G A LMO7 Intron 0.29 TCGA-NI-A4U2-01 13 77589641 77589641 A T FBXL3 Silent p.T182T 0.33 TCGA-NI-A4U2-01 14 23315339 23315339 G T MMP14 3'UTR 0.22 TCGA-NI-A4U2-01 14 36005328 36005328 T C INSM2 3'UTR 0.39 TCGA-NI-A4U2-01 15 23931535 23931535 T C NDN Missense_Mutation p.E277G 0.25 deleterious(0.02) benign(0.283) TCGA-NI-A4U2-01 15 54590037 54590037 T A UNC13C Silent p.S1339S 0.30 TCGA-NI-A4U2-01 16 1417163 1417179 CCGATGTCCCCACAGCC - UNKL Intron 0.13 TCGA-NI-A4U2-01 16 1843688 1843688 G A IGFALS 5'UTR 0.14 TCGA-NI-A4U2-01 16 19871744 19871744 G T GPRC5B 3'UTR 0.40 TCGA-NI-A4U2-01 16 27549250 27549250 T A GTF3C1 Splice_Site p.X203_splice 0.33 TCGA-NI-A4U2-01 16 46716005 46716005 C G VPS35 Missense_Mutation p.S62T 0.06 tolerated(0.51) benign(0.144) TCGA-NI-A4U2-01 16 58549753 58549753 G T SETD6 Missense_Mutation p.C29F 0.28 deleterious(0) probably_damaging(0.98) TCGA-NI-A4U2-01 16 71019100 71019100 G C HYDIN Missense_Mutation p.I1440M 0.31 probably_damaging(0.965) TCGA-NI-A4U2-01 16 72829983 72829983 C T ZFHX3 Missense_Mutation p.E2200K 0.38 probably_damaging(0.994) TCGA-NI-A4U2-01 17 11166833 11166833 G A SHISA6 Silent p.K263K 0.49 TCGA-NI-A4U2-01 17 26948494 26948494 C A KIAA0100 Missense_Mutation p.R1661L 0.31 tolerated(0.28) benign(0.018) TCGA-NI-A4U2-01 17 63554756 63554756 C A AXIN2 5'UTR 0.54 TCGA-NI-A4U2-01 17 67080447 67080447 T C ABCA6 Missense_Mutation p.D1437G 0.25 deleterious(0) probably_damaging(0.992) TCGA-NI-A4U2-01 17 7131298 7131298 C A DVL2 Missense_Mutation p.R367L 0.54 deleterious(0) possibly_damaging(0.821) TCGA-NI-A4U2-01 17 78220002 78220002 G A SLC26A11 Missense_Mutation p.V383M 0.28 deleterious(0.04) benign(0.276) TCGA-NI-A4U2-01 17 7851271 7851278 CTGTCGAC - CNTROB Frame_Shift_Del p.D730Afs*3 0.33 TCGA-NI-A4U2-01 18 50731690 50731690 G A DCC Missense_Mutation p.G560S 0.30 tolerated(0.64) benign(0.019) TCGA-NI-A4U2-01 18 55024675 55024675 G A ST8SIA3 Silent p.P278P 0.29 TCGA-NI-A4U2-01 18 57136703 57136703 A T CCBE1 Splice_Site p.X134_splice 0.04 TCGA-NI-A4U2-01 18 9102767 9102767 C T NDUFV2 Missense_Mutation p.A9V 0.45 tolerated(0.26) benign(0) TCGA-NI-A4U2-01 19 10248624 10248624 C T DNMT1 Missense_Mutation p.V1393M 0.37 deleterious(0) possibly_damaging(0.546) TCGA-NI-A4U2-01 19 16060284 16060284 T C OR10H4 Missense_Mutation p.M156T 0.03 tolerated(0.16) benign(0.057) TCGA-NI-A4U2-01 19 19654087 19654087 A G CILP2 Silent p.R336R 0.27 TCGA-NI-A4U2-01 19 2413898 2413898 C A TMPRSS9 Silent p.A451A 0.28 TCGA-NI-A4U2-01 19 3522996 3522996 G A FZR1 Silent p.Q3Q 0.32 TCGA-NI-A4U2-01 19 35523452 35523452 T A SCN1B Missense_Mutation p.C21S 0.24 deleterious(0) unknown(0) TCGA-NI-A4U2-01 19 38796134 38796134 C T YIF1B Missense_Mutation p.R268Q 0.36 deleterious(0.01) possibly_damaging(0.768) TCGA-NI-A4U2-01 19 38964295 38964295 A G RYR1 Silent p.K1348K 0.38 TCGA-NI-A4U2-01 19 43258392 43258392 G C PSG8 3'UTR 0.11 TCGA-NI-A4U2-01 19 48244419 48244419 C T EHD2 Silent p.D454D 0.31 TCGA-NI-A4U2-01 19 48565344 48565344 T C PLA2G4C Missense_Mutation p.I400V 0.28 deleterious(0.02) possibly_damaging(0.714) TCGA-NI-A4U2-01 19 51171701 51171701 G A SHANK1 Silent p.S1172S 0.39 TCGA-NI-A4U2-01 19 51525694 51525694 G C KLK11 3'UTR 0.41 TCGA-NI-A4U2-01 19 51920190 51920190 G A SIGLEC10 Missense_Mutation p.P146S 0.25 deleterious(0.02) probably_damaging(0.99) TCGA-NI-A4U2-01 19 52817496 52817496 G T ZNF480 Missense_Mutation p.V55L 0.27 deleterious(0) probably_damaging(0.989) TCGA-NI-A4U2-01 19 8932718 8932718 G A ZNF558 Silent p.G27G 0.41 TCGA-NI-A4U2-01 1 12175637 12175637 A C TNFRSF8 Missense_Mutation p.D266A 0.33 deleterious(0) possibly_damaging(0.905) TCGA-NI-A4U2-01 1 150778408 150778408 C A CTSK Nonsense_Mutation p.E110* 0.42 TCGA-NI-A4U2-01 1 154543798 154543798 C A CHRNB2 Missense_Mutation p.Q167K 0.05 deleterious(0) probably_damaging(0.999) TCGA-NI-A4U2-01 1 155295430 155295430 G C RUSC1 Missense_Mutation p.S594T 0.31 tolerated(0.18) probably_damaging(0.998) TCGA-NI-A4U2-01 1 181452992 181452992 G T CACNA1E Missense_Mutation p.A38S 0.39 tolerated(0.61) possibly_damaging(0.515) TCGA-NI-A4U2-01 1 211545809 211545809 A G TRAF5 Missense_Mutation p.Q480R 0.30 deleterious(0) probably_damaging(0.998) TCGA-NI-A4U2-01 1 220193425 220193425 T C EPRS Silent p.P418P 0.23 TCGA-NI-A4U2-01 1 32687989 32687989 C T EIF3I 5'UTR 0.32 TCGA-NI-A4U2-01 1 53727742 53727742 C G LRP8 Missense_Mutation p.E638Q 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-NI-A4U2-01 1 67833556 67833556 A G IL12RB2 Missense_Mutation p.N436S 0.24 tolerated(0.92) benign(0.002) TCGA-NI-A4U2-01 20 31814775 31814775 G A BPIFA3 Missense_Mutation p.V221M 0.16 deleterious(0) probably_damaging(0.999) TCGA-NI-A4U2-01 20 34773213 34773213 C T EPB41L1 Silent p.T247T 0.16 TCGA-NI-A4U2-01 20 44511883 44511883 A C ZSWIM1 Missense_Mutation p.S218R 0.28 tolerated(0.85) benign(0.055) TCGA-NI-A4U2-01 20 58520199 58520199 A T FAM217B 3'UTR 0.08 TCGA-NI-A4U2-01 22 32589248 32589248 G A RFPL2 Intron 0.48 TCGA-NI-A4U2-01 22 39884425 39884425 C T MGAT3 Missense_Mutation p.T358I 0.31 deleterious(0.03) benign(0.145) TCGA-NI-A4U2-01 2 133489528 133489528 G T NCKAP5 Missense_Mutation p.P1742Q 0.33 tolerated(0.61) benign(0.109) TCGA-NI-A4U2-01 2 153515808 153515808 A C PRPF40A Missense_Mutation p.H795Q 0.37 deleterious(0.02) unknown(0) TCGA-NI-A4U2-01 2 170055351 170055351 C T LRP2 Silent p.L2841L 0.28 TCGA-NI-A4U2-01 2 171260757 171260757 A T MYO3B Missense_Mutation p.M760L 0.33 tolerated(0.16) benign(0.027) TCGA-NI-A4U2-01 2 178081416 178081416 G T HNRNPA3 Missense_Mutation p.G219V 0.28 deleterious(0.01) benign(0) TCGA-NI-A4U2-01 2 179201097 179201097 A G OSBPL6 Missense_Mutation p.T243A 0.34 tolerated(0.55) benign(0.018) TCGA-NI-A4U2-01 2 179579150 179579150 C T TTN Nonsense_Mutation p.W8784* 0.15 TCGA-NI-A4U2-01 2 182982048 182982048 C T PPP1R1C Intron 0.34 TCGA-NI-A4U2-01 2 208478154 208478154 A T METTL21A Silent p.T91T 0.28 TCGA-NI-A4U2-01 2 234894478 234894478 C T TRPM8 Silent p.L970L 0.41 TCGA-NI-A4U2-01 2 29129433 29129433 A G WDR43 Silent p.T157T 0.27 TCGA-NI-A4U2-01 2 61258823 61258823 A C PEX13 Missense_Mutation p.Q121P 0.25 tolerated(0.05) benign(0.111) TCGA-NI-A4U2-01 2 61441759 61441760 - GACCTTGTT USP34 In_Frame_Ins p.T2704_S2706dup 0.09 TCGA-NI-A4U2-01 2 63283430 63283430 A T OTX1 Silent p.S348S 0.35 TCGA-NI-A4U2-01 2 74699251 74699251 G A MRPL53 Missense_Mutation p.R112C 0.08 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-NI-A4U2-01 2 87069310 87069323 CAGCTTCAGCAGCC - CD8B Intron 0.15 TCGA-NI-A4U2-01 3 111785275 111785275 G A TMPRSS7 Missense_Mutation p.R405K 0.43 tolerated(1) benign(0.002) TCGA-NI-A4U2-01 3 119526207 119526207 G T NR1I2 Missense_Mutation p.G76V 0.28 tolerated(0.34) benign(0.004) TCGA-NI-A4U2-01 3 14708391 14708391 G A CCDC174 Missense_Mutation p.E221K 0.46 deleterious(0) possibly_damaging(0.458) TCGA-NI-A4U2-01 3 178968887 178968887 T C KCNMB3 Missense_Mutation p.D2G 0.26 deleterious_low_confidence(0) benign(0.043) TCGA-NI-A4U2-01 3 179537706 179537706 T A PEX5L Missense_Mutation p.N294I 0.32 deleterious(0.02) probably_damaging(0.954) TCGA-NI-A4U2-01 3 186504557 186504557 A G EIF4A2 Intron 0.35 TCGA-NI-A4U2-01 3 190347332 190347332 A G IL1RAP Intron 0.31 TCGA-NI-A4U2-01 3 25668275 25668275 A T TOP2B Missense_Mutation p.H694Q 0.07 tolerated(0.31) benign(0.039) TCGA-NI-A4U2-01 3 38620987 38620987 C T SCN5A Splice_Site p.X1077_splice 0.33 TCGA-NI-A4U2-01 3 49724207 49724207 A G MST1 Missense_Mutation p.Y253H 0.23 deleterious(0) probably_damaging(0.994) TCGA-NI-A4U2-01 3 50273847 50273847 G T GNAI2 Missense_Mutation p.G27V 0.34 deleterious(0.05) probably_damaging(1) TCGA-NI-A4U2-01 3 50415488 50415488 C T CACNA2D2 Missense_Mutation p.G477D 0.24 tolerated(0.2) probably_damaging(1) TCGA-NI-A4U2-01 3 73437175 73437175 G T PDZRN3 Missense_Mutation p.L488I 0.45 deleterious(0) probably_damaging(0.967) TCGA-NI-A4U2-01 3 7620716 7620716 G T GRM7 Missense_Mutation p.S708I 0.30 tolerated(0.16) probably_damaging(0.998) TCGA-NI-A4U2-01 4 141543975 141543975 G A TBC1D9 Missense_Mutation p.L1059F 0.59 deleterious(0) probably_damaging(0.997) TCGA-NI-A4U2-01 4 153750843 153750843 G A ARFIP1 Missense_Mutation p.E20K 0.30 deleterious_low_confidence(0.01) benign(0.06) TCGA-NI-A4U2-01 4 166220662 166220662 G T KLHL2 Missense_Mutation p.V263F 0.10 deleterious(0) probably_damaging(0.943) TCGA-NI-A4U2-01 4 3494504 3494504 C T DOK7 Missense_Mutation p.S264F 0.04 deleterious(0) probably_damaging(0.91) TCGA-NI-A4U2-01 4 38799346 38799346 C T TLR1 Silent p.G369G 0.14 TCGA-NI-A4U2-01 4 88732684 88732684 C T IBSP Silent p.S192S 0.33 TCGA-NI-A4U2-01 4 89443178 89443178 T C PYURF Missense_Mutation p.Y69C 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-NI-A4U2-01 5 102469329 102469329 G T PPIP5K2 Missense_Mutation p.C96F 0.31 deleterious(0) possibly_damaging(0.68) TCGA-NI-A4U2-01 5 159781851 159781851 C T C1QTNF2 Missense_Mutation p.M101I 0.36 tolerated(0.27) unknown(0) TCGA-NI-A4U2-01 5 180651721 180651721 A G TRIM41 Missense_Mutation p.D241G 0.07 deleterious(0.03) probably_damaging(1) TCGA-NI-A4U2-01 5 40716358 40716358 T A TTC33 Silent p.S226S 0.46 TCGA-NI-A4U2-01 5 98229285 98229285 G A CHD1 Missense_Mutation p.A609V 0.05 deleterious(0.01) probably_damaging(0.947) TCGA-NI-A4U2-01 5 98229286 98229286 C A CHD1 Missense_Mutation p.A609S 0.05 deleterious(0.02) probably_damaging(0.916) TCGA-NI-A4U2-01 6 127768213 127768213 C T KIAA0408 Silent p.E417E 0.12 TCGA-NI-A4U2-01 6 168439388 168439388 A G KIF25 Missense_Mutation p.E158G 0.29 deleterious(0.02) possibly_damaging(0.908) TCGA-NI-A4U2-01 6 30891005 30891005 G T VARS2 Missense_Mutation p.E800D 0.28 tolerated(0.29) benign(0.03) TCGA-NI-A4U2-01 6 30891006 30891006 G T VARS2 Nonsense_Mutation p.E801* 0.28 TCGA-NI-A4U2-01 6 32138303 32138303 G A AGPAT1 Silent p.L137L 0.28 TCGA-NI-A4U2-01 6 36979514 36979514 C T FGD2 Silent p.R137R 0.29 TCGA-NI-A4U2-01 6 41566660 41566660 G A FOXP4 Missense_Mutation p.E677K 0.34 deleterious_low_confidence(0) unknown(0) TCGA-NI-A4U2-01 6 63990465 63990465 T C LGSN Missense_Mutation p.T331A 0.46 tolerated(0.24) benign(0) TCGA-NI-A4U2-01 6 83888466 83888466 T G PGM3 Missense_Mutation p.S347R 0.35 tolerated(0.11) benign(0.066) TCGA-NI-A4U2-01 6 96654738 96654738 C A FUT9 3'UTR 0.35 TCGA-NI-A4U2-01 7 131833385 131833385 C T PLXNA4 Missense_Mutation p.A1561T 0.31 tolerated(0.27) benign(0.266) TCGA-NI-A4U2-01 7 150884322 150884322 C G ASB10 5'Flank 0.52 TCGA-NI-A4U2-01 7 23053624 23053624 C T FAM126A 5'UTR 0.35 TCGA-NI-A4U2-01 7 36571897 36571897 G T AOAH Missense_Mutation p.L454I 0.32 tolerated(0.07) possibly_damaging(0.724) TCGA-NI-A4U2-01 7 48619929 48619929 T A ABCA13 Missense_Mutation p.Y4822N 0.37 probably_damaging(1) TCGA-NI-A4U2-01 7 6621814 6621814 T - ZDHHC4 Frame_Shift_Del p.L102Ffs*7 0.26 TCGA-NI-A4U2-01 7 92764969 92764969 G A SAMD9L Missense_Mutation p.H106Y 0.27 deleterious(0.03) benign(0.01) TCGA-NI-A4U2-01 7 95838258 95838258 T C SLC25A13 Silent p.T120T 0.58 TCGA-NI-A4U2-01 8 105544164 105544164 T A LRP12 Missense_Mutation p.E36V 0.40 deleterious_low_confidence(0.01) benign(0.122) TCGA-NI-A4U2-01 8 32621590 32621590 C T NRG1 Silent p.Y536Y 0.28 TCGA-NI-A4U2-01 8 70981670 70981670 C T PRDM14 Silent p.P142P 0.08 TCGA-NI-A4U2-01 9 100105674 100105674 C G CCDC180 Missense_Mutation p.S820C 0.05 tolerated(0.09) benign(0.003) TCGA-NI-A4U2-01 9 101908774 101908774 G A TGFBR1 Missense_Mutation p.A380T 0.20 deleterious(0) probably_damaging(0.998) TCGA-NI-A4U2-01 9 139925144 139925144 T A FUT7 3'UTR 0.36 TCGA-NI-A4U2-01 9 17394764 17394764 T C CNTLN Missense_Mutation p.V771A 0.35 tolerated(0.36) probably_damaging(0.972) TCGA-NI-A4U2-01 9 21481769 21481769 T A IFNE 5'UTR 0.05 TCGA-NI-A4U2-01 9 43625360 43625360 A T SPATA31A6 Silent p.S1109S 0.51 TCGA-NI-A4U2-01 9 72874055 72874055 C G SMC5 Missense_Mutation p.P21A 0.34 tolerated_low_confidence(0.72) benign(0.004) TCGA-NI-A4U2-01 9 85863364 85863364 G A FRMD3 Silent p.A421A 0.36 TCGA-NI-A4U2-01 X 103042816 103042816 G T PLP1 Missense_Mutation p.W181C 0.67 deleterious(0) probably_damaging(0.999) TCGA-NI-A4U2-01 X 129149866 129149866 C G BCORL1 Missense_Mutation p.L1040V 0.63 benign(0.351) TCGA-NI-A4U2-01 X 130408573 130408573 C T IGSF1 Missense_Mutation p.G1256R 0.15 tolerated(0.09) probably_damaging(1) TCGA-NI-A4U2-01 X 135106598 135106598 A G SLC9A6 Silent p.V524V 0.59 TCGA-NI-A4U2-01 X 153940659 153940659 G A GAB3 Missense_Mutation p.S305F 0.74 tolerated(0.21) benign(0.013) TCGA-NI-A4U2-01 X 1584369 1584369 G A P2RY8 3'UTR 0.27 TCGA-NI-A4U2-01 X 1585347 1585347 C A P2RY8 Silent p.A35A 0.33 TCGA-NI-A4U2-01 X 2645348 2645348 T G CD99 Intron 0.30 TCGA-NI-A4U2-01 X 49854827 49854827 G T CLCN5 Missense_Mutation p.G600V 0.57 deleterious(0) probably_damaging(1) TCGA-NI-A4U2-01 X 79698451 79698451 G A FAM46D Missense_Mutation p.C138Y 0.14 tolerated(0.37) possibly_damaging(0.589) TCGA-NI-A8LF-01 10 103560098 103560098 C T MGEA5 Missense_Mutation p.E366K 0.40 tolerated(0.11) possibly_damaging(0.604) TCGA-NI-A8LF-01 10 105944833 105944833 A C WDR96 Missense_Mutation p.D694E 0.19 deleterious(0) probably_damaging(0.971) TCGA-NI-A8LF-01 10 123844186 123844186 C T TACC2 Missense_Mutation p.P724L 0.39 benign(0) TCGA-NI-A8LF-01 10 124361605 124361605 C T DMBT1 Silent p.G1212G 0.17 TCGA-NI-A8LF-01 10 15151112 15151114 TTC - NMT2 3'UTR 0.12 TCGA-NI-A8LF-01 10 5965611 5965611 A T FBXO18 Missense_Mutation p.I835F 0.06 deleterious(0.03) possibly_damaging(0.447) TCGA-NI-A8LF-01 10 61832737 61832737 C T ANK3 Silent p.V2634V 0.34 TCGA-NI-A8LF-01 11 112119549 112119549 A T PLET1 Silent p.A199A 0.21 TCGA-NI-A8LF-01 11 128840898 128840898 C T ARHGAP32 Missense_Mutation p.A1390T 0.18 tolerated_low_confidence(1) benign(0.002) TCGA-NI-A8LF-01 11 62446470 62446470 A G UBXN1 5'UTR 0.28 TCGA-NI-A8LF-01 11 64901044 64901044 G A SYVN1 Missense_Mutation p.A10V 0.10 tolerated(0.91) benign(0.05) TCGA-NI-A8LF-01 11 66468343 66468343 T A SPTBN2 Missense_Mutation p.D1076V 0.22 deleterious(0.01) probably_damaging(0.924) TCGA-NI-A8LF-01 11 67770601 67770601 G A UNC93B1 Missense_Mutation p.R95C 0.21 deleterious(0) probably_damaging(0.995) TCGA-NI-A8LF-01 11 92624158 92624158 C A FAT3 Missense_Mutation p.S4550Y 0.14 benign(0.299) TCGA-NI-A8LF-01 12 10233967 10233967 G C CLEC1A Missense_Mutation p.S87C 0.36 tolerated(0.06) possibly_damaging(0.784) TCGA-NI-A8LF-01 12 2939769 2939769 T C NRIP2 Intron 0.34 TCGA-NI-A8LF-01 12 2939770 2939770 T C NRIP2 Intron 0.33 TCGA-NI-A8LF-01 12 54743441 54743441 A G COPZ1 Missense_Mutation p.Q162R 0.36 deleterious(0.01) benign(0.196) TCGA-NI-A8LF-01 12 55945104 55945104 A C OR6C4 Missense_Mutation p.T32P 0.35 deleterious_low_confidence(0) benign(0.203) TCGA-NI-A8LF-01 12 58163586 58163586 T C METTL1 Missense_Mutation p.K143R 0.33 deleterious(0.03) possibly_damaging(0.734) TCGA-NI-A8LF-01 12 64660942 64660942 C T C12orf56 3'UTR 0.43 TCGA-NI-A8LF-01 12 64660947 64660947 C T C12orf56 3'UTR 0.30 TCGA-NI-A8LF-01 12 80928756 80928756 T C PTPRQ Silent p.P971P 0.35 TCGA-NI-A8LF-01 13 108863529 108863529 T C LIG4 Missense_Mutation p.K30E 0.15 deleterious(0.03) benign(0.217) TCGA-NI-A8LF-01 13 24242840 24242840 C T TNFRSF19 Silent p.G283G 0.31 TCGA-NI-A8LF-01 13 30814683 30814683 C A KATNAL1 Nonsense_Mutation p.E214* 0.06 TCGA-NI-A8LF-01 13 40256393 40256393 C A COG6 Silent p.V260V 0.33 TCGA-NI-A8LF-01 14 106641976 106641976 G A IGHV1-18 Missense_Mutation p.L8F 0.51 tolerated(0.09) benign(0.308) TCGA-NI-A8LF-01 14 20345061 20345061 T G OR4K2 Missense_Mutation p.I212S 0.11 tolerated(0.1) possibly_damaging(0.742) TCGA-NI-A8LF-01 14 60928094 60928094 C T C14orf39 Silent p.Q365Q 0.34 TCGA-NI-A8LF-01 14 61747677 61747677 C T TMEM30B Silent p.L63L 0.32 TCGA-NI-A8LF-01 15 49255156 49255156 G A SHC4 Silent p.F19F 0.19 TCGA-NI-A8LF-01 15 75651670 75651670 T G MAN2C1 Missense_Mutation p.R686S 0.24 tolerated(0.74) benign(0.003) TCGA-NI-A8LF-01 15 75651671 75651671 C A MAN2C1 Missense_Mutation p.R686I 0.23 tolerated(0.2) benign(0.03) TCGA-NI-A8LF-01 15 89417247 89417247 G T ACAN Missense_Mutation p.C2503F 0.09 deleterious(0) probably_damaging(0.999) TCGA-NI-A8LF-01 16 31336283 31336283 C T ITGAM Missense_Mutation p.P766L 0.17 deleterious(0) probably_damaging(0.996) TCGA-NI-A8LF-01 17 14205320 14205320 A G HS3ST3B1 Missense_Mutation p.D162G 0.25 deleterious(0.03) possibly_damaging(0.705) TCGA-NI-A8LF-01 17 20224899 20224899 G T AC004702.2 Intron 0.64 TCGA-NI-A8LF-01 17 27024667 27024667 T G SUPT6H Silent p.A1413A 0.32 TCGA-NI-A8LF-01 17 35615246 35615246 T A ACACA Missense_Mutation p.Y517F 0.18 deleterious(0.01) probably_damaging(0.99) TCGA-NI-A8LF-01 17 41975687 41975687 C A MPP2 Silent p.L31L 0.16 TCGA-NI-A8LF-01 17 63545701 63545701 T C AXIN2 Missense_Mutation p.N298S 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-NI-A8LF-01 17 68173684 68173684 C T KCNJ2 3'UTR 0.46 TCGA-NI-A8LF-01 17 73775166 73775166 A C H3F3B Silent p.A30A 0.31 TCGA-NI-A8LF-01 17 7577112 7577113 - ACAA TP53 Frame_Shift_Ins p.A276Lfs*31 0.60 TCGA-NI-A8LF-01 18 13100343 13100343 G T CEP192 Missense_Mutation p.V2235L 0.29 tolerated(0.13) benign(0.033) TCGA-NI-A8LF-01 18 14530546 14530546 A G POTEC Silent p.C354C 0.29 TCGA-NI-A8LF-01 18 29890207 29890207 C G GAREM Missense_Mutation p.K114N 0.18 tolerated(0.12) benign(0.177) TCGA-NI-A8LF-01 18 70502522 70502522 C A NETO1 Intron 0.15 TCGA-NI-A8LF-01 19 12542634 12542634 G C ZNF443 Missense_Mutation p.L118V 0.41 deleterious(0.03) probably_damaging(0.997) TCGA-NI-A8LF-01 19 13387894 13387894 T C CACNA1A Missense_Mutation p.M1291V 0.18 benign(0.002) TCGA-NI-A8LF-01 19 17416601 17416601 G T MRPL34 5'UTR 0.33 TCGA-NI-A8LF-01 19 17899338 17899338 T C FCHO1 3'UTR 0.40 TCGA-NI-A8LF-01 19 18895754 18895754 C T COMP Nonsense_Mutation p.W622* 0.20 TCGA-NI-A8LF-01 19 21541901 21541901 G A ZNF738 5'UTR 0.38 TCGA-NI-A8LF-01 19 38380266 38380266 C T WDR87 Missense_Mutation p.V1310I 0.19 benign(0.067) TCGA-NI-A8LF-01 19 39361800 39361800 G A RINL Silent p.L173L 0.07 TCGA-NI-A8LF-01 19 42311267 42311267 T C CEACAM3 Intron 0.35 TCGA-NI-A8LF-01 19 42914801 42914801 C A LIPE Silent p.A359A 0.40 TCGA-NI-A8LF-01 19 54515342 54515342 G A CACNG6 Missense_Mutation p.G228S 0.19 tolerated(0.28) benign(0.158) TCGA-NI-A8LF-01 19 58579098 58579098 G A ZNF135 Missense_Mutation p.G440R 0.49 deleterious(0.02) probably_damaging(1) TCGA-NI-A8LF-01 1 111216625 111216625 C A KCNA3 Silent p.T269T 0.46 TCGA-NI-A8LF-01 1 151111134 151111134 G T SEMA6C Nonsense_Mutation p.S143* 0.13 TCGA-NI-A8LF-01 1 152648972 152648972 A G LCE2C 3'UTR 0.30 TCGA-NI-A8LF-01 1 157488260 157488260 T C FCRL5 Missense_Mutation p.Y924C 0.22 deleterious(0) probably_damaging(0.999) TCGA-NI-A8LF-01 1 16802495 16802506 GCCTCCTGCTTC - CROCCP3 RNA 0.62 TCGA-NI-A8LF-01 1 214818024 214818024 T C CENPF Missense_Mutation p.L1704P 0.40 possibly_damaging(0.858) TCGA-NI-A8LF-01 1 229601263 229601263 T A NUP133 Missense_Mutation p.M735L 0.33 deleterious(0.01) benign(0.004) TCGA-NI-A8LF-01 1 229667460 229667460 G A ABCB10 Missense_Mutation p.S453L 0.18 deleterious(0) benign(0.187) TCGA-NI-A8LF-01 1 231829897 231829897 G A DISC1 Silent p.R131R 0.41 TCGA-NI-A8LF-01 1 27087429 27087429 G T ARID1A Missense_Mutation p.S668I 0.06 unknown(0) TCGA-NI-A8LF-01 1 29070165 29070165 C T YTHDF2 Silent p.V461V 0.18 TCGA-NI-A8LF-01 1 39909144 39909144 A T MACF1 Missense_Mutation p.E4384D 0.66 possibly_damaging(0.594) TCGA-NI-A8LF-01 1 65878836 65878836 C A DNAJC6 3'UTR 0.43 TCGA-NI-A8LF-01 20 21284010 21284010 G T XRN2 5'UTR 0.33 TCGA-NI-A8LF-01 20 30803178 30803178 C A POFUT1 Missense_Mutation p.P118H 0.12 deleterious(0) probably_damaging(1) TCGA-NI-A8LF-01 21 37710242 37710242 A G MORC3 Missense_Mutation p.H153R 0.23 tolerated(0.56) benign(0.016) TCGA-NI-A8LF-01 22 24439435 24439435 C T CABIN1 Missense_Mutation p.R139W 0.53 deleterious(0) probably_damaging(0.999) TCGA-NI-A8LF-01 22 30823227 30823227 G T MTFP1 Missense_Mutation p.A89S 0.16 tolerated(0.74) benign(0.006) TCGA-NI-A8LF-01 22 42607116 42607116 G T TCF20 Missense_Mutation p.A1399D 0.29 benign(0.082) TCGA-NI-A8LF-01 2 115200188 115200188 C T DPP10 5'UTR 0.33 TCGA-NI-A8LF-01 2 128757662 128757662 G A SAP130 Missense_Mutation p.A385V 0.22 deleterious_low_confidence(0.04) possibly_damaging(0.55) TCGA-NI-A8LF-01 2 142012194 142012194 G A LRP1B Silent p.C120C 0.22 TCGA-NI-A8LF-01 2 151326663 151326663 G A RND3 Silent p.H191H 0.07 TCGA-NI-A8LF-01 2 170058158 170058158 G T LRP2 Missense_Mutation p.T2811N 0.07 probably_damaging(0.955) TCGA-NI-A8LF-01 2 175289262 175289262 C T SCRN3 Missense_Mutation p.S326L 0.46 deleterious(0) probably_damaging(0.988) TCGA-NI-A8LF-01 2 179448455 179448455 C A TTN Missense_Mutation p.E21818D 0.18 TCGA-NI-A8LF-01 2 201462230 201462230 T G AOX1 Splice_Site p.X103_splice 0.19 TCGA-NI-A8LF-01 2 202342494 202342494 G C STRADB Missense_Mutation p.S234T 0.06 deleterious(0) probably_damaging(0.998) TCGA-NI-A8LF-01 2 215840618 215840618 C A ABCA12 Missense_Mutation p.V1758F 0.20 deleterious(0) probably_damaging(0.998) TCGA-NI-A8LF-01 2 31805916 31805916 G T SRD5A2 RNA 0.25 TCGA-NI-A8LF-01 2 3750104 3750104 G A ALLC Missense_Mutation p.R376Q 0.25 tolerated_low_confidence(0.17) benign(0.061) TCGA-NI-A8LF-01 2 45879111 45879111 A T PRKCE 5'UTR 0.45 TCGA-NI-A8LF-01 2 46808791 46808791 G C RHOQ 3'UTR 0.26 TCGA-NI-A8LF-01 2 62069387 62069387 T G FAM161A Missense_Mutation p.K98Q 0.40 deleterious(0) probably_damaging(0.995) TCGA-NI-A8LF-01 2 64139769 64139769 T A VPS54 Missense_Mutation p.I817F 0.03 tolerated(0.08) possibly_damaging(0.875) TCGA-NI-A8LF-01 3 101370476 101370476 C A ZBTB11 Missense_Mutation p.R899L 0.42 deleterious(0.02) probably_damaging(0.998) TCGA-NI-A8LF-01 3 126272260 126272260 C A C3orf22 5'UTR 0.15 TCGA-NI-A8LF-01 3 127642047 127642047 T A KBTBD12 Missense_Mutation p.V48D 0.17 deleterious(0) probably_damaging(0.982) TCGA-NI-A8LF-01 3 165548304 165548304 T C BCHE Missense_Mutation p.N173S 0.42 deleterious(0.04) probably_damaging(1) TCGA-NI-A8LF-01 3 184429511 184429511 C T MAGEF1 Silent p.S33S 0.47 TCGA-NI-A8LF-01 3 186505136 186505136 T C EIF4A2 Intron 0.46 TCGA-NI-A8LF-01 3 38830494 38830494 C T SCN10A Silent p.L141L 0.11 TCGA-NI-A8LF-01 3 41266136 41266136 T C CTNNB1 Missense_Mutation p.S45P 0.50 deleterious(0) probably_damaging(0.939) TCGA-NI-A8LF-01 4 103499967 103499967 T C NFKB1 Intron 0.33 TCGA-NI-A8LF-01 4 106638934 106638934 A T GSTCD Missense_Mutation p.E55V 0.35 deleterious(0.02) benign(0.221) TCGA-NI-A8LF-01 4 111543517 111543517 C A PITX2 Missense_Mutation p.A34S 0.21 tolerated_low_confidence(0.65) benign(0.001) TCGA-NI-A8LF-01 4 1161163 1161164 - CCCC SPON2 3'UTR 0.29 TCGA-NI-A8LF-01 4 119951690 119951690 G T SYNPO2 Missense_Mutation p.R587I 0.19 deleterious(0) probably_damaging(0.995) TCGA-NI-A8LF-01 4 151505054 151505054 G A MAB21L2 Nonsense_Mutation p.W291* 0.38 TCGA-NI-A8LF-01 4 39254852 39254852 A G WDR19 Missense_Mutation p.E939G 0.25 deleterious(0.03) benign(0.105) TCGA-NI-A8LF-01 4 48901944 48901944 T C OCIAD2 Splice_Site p.X23_splice 0.14 TCGA-NI-A8LF-01 4 5633652 5633652 G A EVC2 Silent p.H526H 0.17 TCGA-NI-A8LF-01 4 62936333 62936333 C G LPHN3 Missense_Mutation p.P1373A 0.26 deleterious_low_confidence(0.04) benign(0.403) TCGA-NI-A8LF-01 5 13894846 13894846 C T DNAH5 Missense_Mutation p.D782N 0.22 benign(0.005) TCGA-NI-A8LF-01 5 160071238 160071238 G T ATP10B Missense_Mutation p.Q259K 0.33 tolerated(1) benign(0.006) TCGA-NI-A8LF-01 5 19839234 19839234 A T CDH18 5'UTR 0.27 TCGA-NI-A8LF-01 5 32230150 32230150 T C MTMR12 Missense_Mutation p.T660A 0.40 tolerated(0.8) benign(0.038) TCGA-NI-A8LF-01 5 32711930 32711930 C T NPR3 Silent p.G16G 0.33 TCGA-NI-A8LF-01 5 39392502 39392502 G T DAB2 Missense_Mutation p.L99I 0.16 deleterious(0.01) possibly_damaging(0.709) TCGA-NI-A8LF-01 5 71496132 71496132 A T MAP1B Missense_Mutation p.D2317V 0.39 possibly_damaging(0.812) TCGA-NI-A8LF-01 5 89815032 89815032 T A LYSMD3 Silent p.T175T 0.17 TCGA-NI-A8LF-01 5 9227034 9227034 G A SEMA5A Missense_Mutation p.R127W 0.44 tolerated(0.06) benign(0.005) TCGA-NI-A8LF-01 6 147704135 147704135 G A STXBP5 Splice_Site p.X1138_splice 0.73 TCGA-NI-A8LF-01 6 49806179 49806179 C T CRISP1 Missense_Mutation p.C198Y 0.15 deleterious(0) probably_damaging(1) TCGA-NI-A8LF-01 6 52999070 52999070 T A GCM1 Missense_Mutation p.H43L 0.11 deleterious(0.03) possibly_damaging(0.839) TCGA-NI-A8LF-01 6 99283620 99283620 G A POU3F2 Missense_Mutation p.V291M 0.20 deleterious(0) probably_damaging(1) TCGA-NI-A8LF-01 7 138711098 138711098 C T ZC3HAV1L 3'UTR 0.30 TCGA-NI-A8LF-01 7 149480011 149480011 C G SSPO RNA 0.11 TCGA-NI-A8LF-01 7 149480083 149480083 C T SSPO RNA 0.12 TCGA-NI-A8LF-01 7 150269493 150269493 C T GIMAP4 Missense_Mutation p.P112L 0.16 deleterious(0.03) probably_damaging(0.914) TCGA-NI-A8LF-01 7 150649763 150649763 G A KCNH2 Missense_Mutation p.T436M 0.35 tolerated(0.15) benign(0.172) TCGA-NI-A8LF-01 7 27170333 27170333 A G HOXA4 Missense_Mutation p.L7S 0.16 deleterious(0) possibly_damaging(0.587) TCGA-NI-A8LF-01 7 43921551 43921551 C A URGCP Nonsense_Mutation p.E40* 0.11 TCGA-NI-A8LF-01 7 45121229 45121229 G T NACAD Missense_Mutation p.Q1410K 0.35 deleterious(0) probably_damaging(0.968) TCGA-NI-A8LF-01 7 53104605 53104605 A T POM121L12 3'UTR 0.14 TCGA-NI-A8LF-01 7 57188071 57188071 T C ZNF479 Missense_Mutation p.K351E 0.43 deleterious(0) possibly_damaging(0.483) TCGA-NI-A8LF-01 7 83119477 83119477 G A SEMA3E Missense_Mutation p.L77F 0.28 tolerated(0.71) possibly_damaging(0.854) TCGA-NI-A8LF-01 7 86978406 86978406 T - CROT Frame_Shift_Del p.S8Qfs*25 0.26 TCGA-NI-A8LF-01 7 92118609 92118609 C G PEX1 Missense_Mutation p.E1255D 0.13 tolerated(0.2) benign(0.007) TCGA-NI-A8LF-01 7 93055707 93055707 G A CALCR Silent p.I496I 0.32 TCGA-NI-A8LF-01 8 27369359 27369359 A T EPHX2 Missense_Mutation p.N223Y 0.55 deleterious(0.03) benign(0.01) TCGA-NI-A8LF-01 8 68950408 68950408 T C PREX2 Silent p.T240T 0.10 TCGA-NI-A8LF-01 8 93003931 93003931 G C RUNX1T1 Missense_Mutation p.H320Q 0.19 tolerated(0.08) possibly_damaging(0.889) TCGA-NI-A8LF-01 9 135277372 135277373 - T TTF1 Frame_Shift_Ins p.K280Efs*10 0.23 TCGA-NI-A8LF-01 9 139355726 139355726 C A SEC16A Missense_Mutation p.D1632Y 0.41 deleterious(0) probably_damaging(0.996) TCGA-NI-A8LF-01 X 107976017 107976017 G A IRS4 Silent p.N1186N 0.73 TCGA-NI-A8LF-01 X 132548888 132548888 G C GPC4 Missense_Mutation p.L36V 0.29 tolerated(0.84) benign(0.013) TCGA-NI-A8LF-01 X 152225496 152225496 G C PNMA3 Missense_Mutation p.E28D 0.39 deleterious(0.01) benign(0.419) TCGA-NI-A8LF-01 X 153174961 153174961 G A ARHGAP4 Silent p.L855L 0.76 TCGA-NI-A8LF-01 X 54209040 54209040 C T FAM120C Missense_Mutation p.V198M 0.51 deleterious(0.04) benign(0.052) TCGA-NI-A8LF-01 X 7812114 7812114 A G VCX 3'UTR 0.38 TCGA-NI-A8LF-01 X 8434481 8434481 A G VCX3B 3'UTR 0.07 TCGA-NI-A8LF-01 X 84600900 84600900 A T POF1B Missense_Mutation p.L230Q 0.42 tolerated_low_confidence(0.07) possibly_damaging(0.632) TCGA-O8-A75V-01 10 135015133 135015133 G T KNDC1 Missense_Mutation p.V1040L 0.30 tolerated(0.17) benign(0.011) TCGA-O8-A75V-01 10 63195964 63195964 T C TMEM26 Silent p.P78P 0.27 TCGA-O8-A75V-01 10 72541762 72541764 CTT - TBATA In_Frame_Del p.K24del 0.15 TCGA-O8-A75V-01 11 113103884 113103884 C T NCAM1 Missense_Mutation p.P562L 0.30 deleterious(0.04) probably_damaging(0.996) TCGA-O8-A75V-01 11 119054109 119054109 C A NLRX1 Silent p.V963V 0.18 TCGA-O8-A75V-01 11 130058517 130058517 G A ST14 Missense_Mutation p.E112K 0.18 deleterious(0) probably_damaging(0.984) TCGA-O8-A75V-01 11 133790932 133790932 G A IGSF9B Silent p.N896N 0.29 TCGA-O8-A75V-01 11 34152419 34152419 G A NAT10 Missense_Mutation p.S435N 0.26 tolerated(0.09) benign(0.022) TCGA-O8-A75V-01 11 66109566 66109566 C A BRMS1 Splice_Site p.X47_splice 0.20 TCGA-O8-A75V-01 12 124419244 124419244 C T DNAH10 Silent p.P4400P 0.28 TCGA-O8-A75V-01 12 21008043 21008043 G A LST3 Missense_Mutation p.E56K 0.23 deleterious(0) probably_damaging(1) TCGA-O8-A75V-01 12 4737115 4737115 A T AKAP3 Missense_Mutation p.L318Q 0.27 deleterious(0) probably_damaging(1) TCGA-O8-A75V-01 12 49723688 49723688 C T TROAP Silent p.L405L 0.06 TCGA-O8-A75V-01 12 53223841 53223841 T G KRT79 Missense_Mutation p.Q274P 0.23 deleterious(0) benign(0.209) TCGA-O8-A75V-01 12 62148740 62148740 T C FAM19A2 Missense_Mutation p.I58V 0.29 tolerated(0.14) benign(0.371) TCGA-O8-A75V-01 12 77417724 77417724 T C E2F7 3'UTR 0.29 TCGA-O8-A75V-01 12 95603889 95603889 T G FGD6 Missense_Mutation p.N391H 0.26 tolerated_low_confidence(0.07) benign(0.002) TCGA-O8-A75V-01 13 42876851 42876851 A T AKAP11 Silent p.P1323P 0.19 TCGA-O8-A75V-01 13 79175699 79175699 C T POU4F1 Missense_Mutation p.E371K 0.18 deleterious(0) unknown(0) TCGA-O8-A75V-01 14 103996384 103996384 T A TRMT61A Silent p.G23G 0.25 TCGA-O8-A75V-01 14 45650881 45650882 - A FANCM Frame_Shift_Ins p.R1456Afs*13 0.23 TCGA-O8-A75V-01 14 60194074 60194095 GAGGGCGGCGGGCCGCCCACGT - RTN1 Frame_Shift_Del p.H436Rfs*12 0.25 TCGA-O8-A75V-01 14 70634966 70634966 G A SLC8A3 Silent p.V58V 0.06 TCGA-O8-A75V-01 15 31325061 31325061 G A TRPM1 Missense_Mutation p.A945V 0.23 deleterious(0) probably_damaging(1) TCGA-O8-A75V-01 15 43552276 43552276 A T TGM5 Missense_Mutation p.I137N 0.12 deleterious(0) probably_damaging(0.972) TCGA-O8-A75V-01 16 1676129 1676129 A T CRAMP1L Missense_Mutation p.T168S 0.16 tolerated(0.08) possibly_damaging(0.501) TCGA-O8-A75V-01 16 18852978 18852978 G T SMG1 Nonsense_Mutation p.S2202* 0.47 TCGA-O8-A75V-01 16 67995581 67995581 G C SLC12A4 Missense_Mutation p.S82W 0.33 deleterious(0) probably_damaging(1) TCGA-O8-A75V-01 17 19316448 19316448 G A RNF112 Silent p.L193L 0.06 TCGA-O8-A75V-01 17 36719591 36719591 A C SRCIN1 Silent p.A236A 0.20 TCGA-O8-A75V-01 17 41590858 41590858 G T DHX8 Silent p.T877T 0.34 TCGA-O8-A75V-01 17 42552196 42552196 C A GPATCH8 Splice_Site p.X40_splice 0.26 TCGA-O8-A75V-01 17 60759063 60759063 C G MRC2 Intron 0.56 TCGA-O8-A75V-01 17 68174203 68174203 T G KCNJ2 3'UTR 0.21 TCGA-O8-A75V-01 17 79860624 79860624 A G NPB Nonstop_Mutation p.*126Wext*41 0.29 TCGA-O8-A75V-01 18 14851875 14851875 G A ANKRD30B Missense_Mutation p.S1192N 0.20 tolerated(0.42) benign(0.001) TCGA-O8-A75V-01 19 10206774 10206774 G T ANGPTL6 Silent p.R156R 0.24 TCGA-O8-A75V-01 19 16319967 16319967 C A AP1M1 Silent p.V175V 0.19 TCGA-O8-A75V-01 19 17397348 17397348 A T ANKLE1 Missense_Mutation p.Q612L 0.27 deleterious(0) possibly_damaging(0.87) TCGA-O8-A75V-01 19 2290105 2290105 C G LINGO3 Silent p.G557G 0.23 TCGA-O8-A75V-01 19 33370231 33370231 C A CEP89 Missense_Mutation p.R730L 0.24 deleterious(0.02) possibly_damaging(0.538) TCGA-O8-A75V-01 19 46815884 46815884 T C HIF3A Silent p.S333S 0.28 TCGA-O8-A75V-01 19 50380869 50380869 G A AKT1S1 5'UTR 0.18 TCGA-O8-A75V-01 19 7528840 7528840 G A ARHGEF18 Silent p.K736K 0.27 TCGA-O8-A75V-01 19 9088914 9088914 C T MUC16 Nonsense_Mutation p.W967* 0.26 TCGA-O8-A75V-01 1 152277443 152277443 G T FLG Missense_Mutation p.Q3307K 0.60 unknown(0) TCGA-O8-A75V-01 1 152287879 152287879 A T FLG Nonsense_Mutation p.Y18* 0.20 TCGA-O8-A75V-01 1 154931467 154931467 C A PYGO2 Missense_Mutation p.V337L 0.23 deleterious(0) possibly_damaging(0.739) TCGA-O8-A75V-01 1 15541674 15541674 T A TMEM51 Missense_Mutation p.W31R 0.43 deleterious(0) probably_damaging(1) TCGA-O8-A75V-01 1 156815580 156815580 C T INSRR Missense_Mutation p.D669N 0.39 tolerated(0.14) benign(0.006) TCGA-O8-A75V-01 1 15707263 15707263 G T FHAD1 Missense_Mutation p.A471S 0.07 tolerated(0.39) benign(0.015) TCGA-O8-A75V-01 1 209953855 209953855 C G TRAF3IP3 Missense_Mutation p.N451K 0.20 tolerated(0.33) benign(0.01) TCGA-O8-A75V-01 1 217783370 217783370 C G GPATCH2 Intron 0.27 TCGA-O8-A75V-01 1 231059660 231059660 G C TTC13 Missense_Mutation p.P581A 0.20 tolerated(0.07) possibly_damaging(0.638) TCGA-O8-A75V-01 1 232943321 232943321 A G MAP10 Missense_Mutation p.Y851C 0.14 deleterious(0.03) benign(0.051) TCGA-O8-A75V-01 1 248020828 248020828 C T TRIM58 Missense_Mutation p.R94W 0.13 deleterious(0.02) benign(0.052) TCGA-O8-A75V-01 21 31852477 31852477 C A KRTAP19-1 Nonsense_Mutation p.G54* 0.21 TCGA-O8-A75V-01 21 38128887 38128887 C A HLCS Silent p.G655G 0.27 TCGA-O8-A75V-01 21 45861740 45861740 C A TRPM2 3'UTR 0.25 TCGA-O8-A75V-01 22 41616796 41616796 G T L3MBTL2 Missense_Mutation p.W259C 0.30 deleterious(0) probably_damaging(1) TCGA-O8-A75V-01 2 1488563 1488563 C T TPO Missense_Mutation p.P512S 0.24 tolerated(0.06) benign(0.119) TCGA-O8-A75V-01 2 174086306 174086306 A T MLTK Intron 0.26 TCGA-O8-A75V-01 2 179593438 179593438 T C TTN Silent p.E6405E 0.30 TCGA-O8-A75V-01 2 20192730 20192730 A G MATN3 3'UTR 0.32 TCGA-O8-A75V-01 2 202250957 202250957 T C TRAK2 Silent p.A649A 0.27 TCGA-O8-A75V-01 2 230661327 230661327 G - TRIP12 Frame_Shift_Del p.H1191Mfs*28 0.17 TCGA-O8-A75V-01 2 238253847 238253847 C A COL6A3 Missense_Mutation p.G2368C 0.15 unknown(0) TCGA-O8-A75V-01 2 29294547 29294547 C A C2orf71 Nonsense_Mutation p.E861* 0.29 TCGA-O8-A75V-01 2 84784866 84784866 T G DNAH6 Missense_Mutation p.I537S 0.25 deleterious(0) benign(0.439) TCGA-O8-A75V-01 3 10076196 10076196 G C FANCD2 Silent p.L83L 0.20 TCGA-O8-A75V-01 3 126071030 126071030 C A KLF15 Missense_Mutation p.V246F 0.28 deleterious(0) possibly_damaging(0.526) TCGA-O8-A75V-01 3 133494329 133494330 GC - TF Frame_Shift_Del p.L580Ffs*4 0.17 TCGA-O8-A75V-01 3 196669253 196669253 T C NCBP2 Intron 0.21 TCGA-O8-A75V-01 3 41266136 41266136 T C CTNNB1 Missense_Mutation p.S45P 0.30 deleterious(0) probably_damaging(0.939) TCGA-O8-A75V-01 3 46727834 46727834 T C ALS2CL Silent p.T210T 0.23 TCGA-O8-A75V-01 3 51690041 51690041 G A RAD54L2 Silent p.Q1027Q 0.29 TCGA-O8-A75V-01 3 68055695 68055695 C T FAM19A1 Intron 0.32 TCGA-O8-A75V-01 4 187539094 187539094 A G FAT1 Silent p.N2882N 0.29 TCGA-O8-A75V-01 4 7043534 7043534 C T CCDC96 Missense_Mutation p.E378K 0.21 deleterious(0.02) probably_damaging(0.946) TCGA-O8-A75V-01 4 74964377 74964377 T C CXCL2 Silent p.K83K 0.38 TCGA-O8-A75V-01 4 75040279 75040279 T C MTHFD2L Missense_Mutation p.I67T 0.42 deleterious(0.01) possibly_damaging(0.532) TCGA-O8-A75V-01 4 7725465 7725465 C T SORCS2 Silent p.D822D 0.31 TCGA-O8-A75V-01 5 140564287 140564287 G T PCDHB16 Missense_Mutation p.R718M 0.57 deleterious_low_confidence(0.01) benign(0.064) TCGA-O8-A75V-01 5 140595793 140595793 C A PCDHB13 Missense_Mutation p.L700I 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.487) TCGA-O8-A75V-01 5 161569259 161569259 G A GABRG2 Missense_Mutation p.V327I 0.22 deleterious(0.01) probably_damaging(0.995) TCGA-O8-A75V-01 5 175819809 175819809 A G CLTB Missense_Mutation p.L219P 0.18 deleterious(0) probably_damaging(1) TCGA-O8-A75V-01 5 36219713 36219713 T C NADK2 Missense_Mutation p.Y210C 0.18 tolerated(0.19) benign(0.006) TCGA-O8-A75V-01 5 41941447 41941447 T C FBXO4 3'UTR 0.10 TCGA-O8-A75V-01 5 71756953 71756953 T C ZNF366 Missense_Mutation p.Y124C 0.26 tolerated_low_confidence(0.17) benign(0.002) TCGA-O8-A75V-01 5 79351761 79351761 A G THBS4 Missense_Mutation p.Q149R 0.17 tolerated(0.83) benign(0.001) TCGA-O8-A75V-01 5 9630121 9630121 G A TAS2R1 Silent p.I8I 0.46 TCGA-O8-A75V-01 6 105177520 105177520 G T HACE1 3'UTR 0.27 TCGA-O8-A75V-01 6 116720771 116720771 A T DSE Missense_Mutation p.I120F 0.32 deleterious(0.05) benign(0.045) TCGA-O8-A75V-01 6 12122422 12122422 A T HIVEP1 Silent p.P798P 0.35 TCGA-O8-A75V-01 6 160494446 160494446 A G IGF2R Missense_Mutation p.K1631R 0.27 tolerated(0.07) possibly_damaging(0.796) TCGA-O8-A75V-01 6 160523558 160523558 T G IGF2R Missense_Mutation p.F2284V 0.20 tolerated(0.48) benign(0.026) TCGA-O8-A75V-01 6 18258580 18258580 T C DEK Missense_Mutation p.M68V 0.31 tolerated(0.31) benign(0.01) TCGA-O8-A75V-01 6 2624102 2624104 TTC - C6orf195 5'UTR 0.29 TCGA-O8-A75V-01 6 26377024 26377024 G A BTN3A2 3'UTR 0.20 TCGA-O8-A75V-01 6 32064613 32064613 C T TNXB Silent p.T339T 0.22 TCGA-O8-A75V-01 6 55378944 55378944 G A HMGCLL1 Silent p.S178S 0.53 TCGA-O8-A75V-01 6 74150010 74150010 C T MB21D1 Missense_Mutation p.A346T 0.03 tolerated(1) benign(0.004) TCGA-O8-A75V-01 7 123517478 123517478 C T HYAL4 3'UTR 0.44 TCGA-O8-A75V-01 7 138394373 138394373 G C ATP6V0A4 Missense_Mutation p.H809D 0.19 deleterious(0.01) probably_damaging(1) TCGA-O8-A75V-01 7 138732242 138732242 G T ZC3HAV1 3'UTR 0.08 TCGA-O8-A75V-01 7 149462853 149462853 G A ZNF467 Silent p.C246C 0.26 TCGA-O8-A75V-01 7 44425666 44425666 C A NUDCD3 Missense_Mutation p.G344C 0.29 deleterious(0) probably_damaging(1) TCGA-O8-A75V-01 7 50135733 50135733 T A C7orf72 Missense_Mutation p.S18T 0.23 tolerated(0.75) benign(0.01) TCGA-O8-A75V-01 7 87168617 87168617 G T ABCB1 Silent p.L788L 0.21 TCGA-O8-A75V-01 7 94293280 94293280 G A PEG10 Missense_Mutation p.E138K 0.36 tolerated(0.05) possibly_damaging(0.472) TCGA-O8-A75V-01 8 133723179 133723179 G T TMEM71 3'UTR 0.21 TCGA-O8-A75V-01 8 144810754 144810754 G A FAM83H Missense_Mutation p.R293C 0.32 deleterious(0.02) possibly_damaging(0.634) TCGA-O8-A75V-01 8 144885835 144885835 C T SCRIB Silent p.E1132E 0.21 TCGA-O8-A75V-01 8 145735205 145735205 G T MFSD3 Missense_Mutation p.W163C 0.45 deleterious(0) probably_damaging(1) TCGA-O8-A75V-01 8 146157910 146157910 G T ZNF16 Nonsense_Mutation p.S88* 0.09 TCGA-O8-A75V-01 8 65537039 65537039 C A CYP7B1 Silent p.L60L 0.74 TCGA-O8-A75V-01 9 128094293 128094293 G T GAPVD1 Missense_Mutation p.R754S 0.28 tolerated(0.22) probably_damaging(0.995) TCGA-O8-A75V-01 9 129596621 129596621 A G ZBTB43 3'UTR 0.29 TCGA-O8-A75V-01 9 34833049 34833049 G A FAM205B RNA 0.14 TCGA-O8-A75V-01 9 71397646 71397646 C G FAM122A 3'UTR 0.30 TCGA-O8-A75V-01 X 129813673 129813673 T C ENOX2 Silent p.V130V 0.55 TCGA-PD-A5DF-01 10 21901356 21901356 G T MLLT10 Missense_Mutation p.C162F 0.39 deleterious(0) probably_damaging(0.999) TCGA-PD-A5DF-01 10 51568316 51568316 A G NCOA4 5'UTR 0.31 TCGA-PD-A5DF-01 11 117860190 117860190 C A IL10RA Missense_Mutation p.N74K 0.33 tolerated(0.19) benign(0.41) TCGA-PD-A5DF-01 11 5372775 5372775 C T OR51B6 Missense_Mutation p.T13I 0.38 deleterious(0.05) benign(0.399) TCGA-PD-A5DF-01 11 55659054 55659054 C A TRIM51 Silent p.P435P 0.29 TCGA-PD-A5DF-01 11 71293255 71293255 T C KRTAP5-11 3'UTR 0.39 TCGA-PD-A5DF-01 11 85975252 85975264 CTGGTGGCAATAT ATAG EED In_Frame_Del p.L225_F229delinsIV 0.26 TCGA-PD-A5DF-01 11 85975264 85975264 T G EED Missense_Mutation p.F229V 0.19 deleterious(0) probably_damaging(0.974) TCGA-PD-A5DF-01 12 132512744 132512744 G T EP400 Silent p.A1764A 0.42 TCGA-PD-A5DF-01 12 29626033 29626033 G A OVCH1 Missense_Mutation p.S535F 0.31 deleterious(0.04) possibly_damaging(0.693) TCGA-PD-A5DF-01 14 95909555 95909555 G A SYNE3 Silent p.P616P 0.34 TCGA-PD-A5DF-01 15 51223097 51223097 C T AP4E1 Silent p.H266H 0.36 TCGA-PD-A5DF-01 15 69011111 69011111 G T CORO2B Missense_Mutation p.G348C 0.37 deleterious(0.01) probably_damaging(0.951) TCGA-PD-A5DF-01 17 10406416 10406416 C T MYH1 Silent p.L947L 0.47 TCGA-PD-A5DF-01 17 19452981 19452981 A T SLC47A1 Silent p.P163P 0.64 TCGA-PD-A5DF-01 17 33467033 33467033 G A NLE1 Missense_Mutation p.S72L 0.32 deleterious(0.03) benign(0.366) TCGA-PD-A5DF-01 17 37792089 37792089 C T PPP1R1B Missense_Mutation p.R196C 0.36 deleterious_low_confidence(0) benign(0.001) TCGA-PD-A5DF-01 17 68175745 68175745 C A KCNJ2 3'UTR 0.34 TCGA-PD-A5DF-01 17 74289942 74289954 CCAGATCCTGATG - QRICH2 Frame_Shift_Del p.A119Vfs*97 0.29 TCGA-PD-A5DF-01 18 24497007 24497007 T A CHST9 Missense_Mutation p.Q183L 0.21 tolerated(0.14) benign(0.075) TCGA-PD-A5DF-01 18 44555102 44555102 G A TCEB3C Missense_Mutation p.T371M 0.02 deleterious(0) possibly_damaging(0.708) TCGA-PD-A5DF-01 18 51025826 51025826 C G DCC Missense_Mutation p.P1353A 0.31 tolerated(0.25) benign(0.145) TCGA-PD-A5DF-01 19 49364729 49364729 C T PLEKHA4 Missense_Mutation p.V99I 0.27 tolerated(1) probably_damaging(0.992) TCGA-PD-A5DF-01 19 55877350 55877350 G C IL11 3'UTR 0.34 TCGA-PD-A5DF-01 19 58565260 58565260 C - ZSCAN1 Frame_Shift_Del p.R358Gfs*92 0.29 TCGA-PD-A5DF-01 19 8520429 8520429 A G HNRNPM Missense_Mutation p.Q85R 0.33 deleterious(0.01) benign(0.078) TCGA-PD-A5DF-01 1 12422877 12422877 T C VPS13D Missense_Mutation p.F3415L 0.50 benign(0.373) TCGA-PD-A5DF-01 1 145281614 145281614 C T NOTCH2NL Silent p.L182L 0.11 TCGA-PD-A5DF-01 1 228482110 228482110 G A OBSCN Missense_Mutation p.V4226I 0.04 benign(0.032) TCGA-PD-A5DF-01 20 16030583 16030583 C T MACROD2 3'UTR 0.40 TCGA-PD-A5DF-01 20 61937235 61937235 G T COL20A1 Nonsense_Mutation p.E114* 0.15 TCGA-PD-A5DF-01 20 61937407 61937407 G C COL20A1 Intron 0.20 TCGA-PD-A5DF-01 22 16287641 16287641 G A POTEH Missense_Mutation p.T82I 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.632) TCGA-PD-A5DF-01 22 22064931 22064931 C T YPEL1 Missense_Mutation p.E35K 0.10 deleterious(0.01) benign(0.311) TCGA-PD-A5DF-01 2 130798117 130798117 G A KLF2P1 3'Flank 0.33 TCGA-PD-A5DF-01 2 1520727 1520727 G T TPO Missense_Mutation p.G864V 0.31 tolerated(0.21) benign(0.043) TCGA-PD-A5DF-01 2 161056696 161056696 C T ITGB6 5'UTR 0.29 TCGA-PD-A5DF-01 2 186673528 186673528 G A FSIP2 Missense_Mutation p.V6588M 0.31 benign(0.006) TCGA-PD-A5DF-01 2 215617259 215617259 G A BARD1 Missense_Mutation p.P530L 0.46 deleterious(0) probably_damaging(0.999) TCGA-PD-A5DF-01 2 219134700 219134700 G C AAMP Missense_Mutation p.P37R 0.37 deleterious(0.05) benign(0.187) TCGA-PD-A5DF-01 2 37454714 37454714 G A CEBPZ Missense_Mutation p.S541L 0.05 deleterious(0) probably_damaging(1) TCGA-PD-A5DF-01 3 121994752 121994752 A G CASR Missense_Mutation p.I491V 0.40 tolerated(0.31) possibly_damaging(0.824) TCGA-PD-A5DF-01 3 14861791 14861791 G T FGD5 Missense_Mutation p.A405S 0.44 tolerated_low_confidence(0.74) benign(0.009) TCGA-PD-A5DF-01 3 20113881 20113881 C G KAT2B Silent p.P120P 0.37 TCGA-PD-A5DF-01 3 54905638 54905638 C A CACNA2D3 Silent p.R567R 0.34 TCGA-PD-A5DF-01 3 64148733 64148742 TTCGCAGTTT - PRICKLE2 Frame_Shift_Del p.K70Sfs*29 0.25 TCGA-PD-A5DF-01 4 104119493 104119493 G A CENPE 5'UTR 0.47 TCGA-PD-A5DF-01 4 7714544 7714544 G A SORCS2 Silent p.E651E 0.42 TCGA-PD-A5DF-01 5 137465065 137465065 C T NME5 Missense_Mutation p.M74I 0.31 tolerated(0.1) possibly_damaging(0.679) TCGA-PD-A5DF-01 5 64447528 64447528 G A ADAMTS6 3'UTR 0.38 TCGA-PD-A5DF-01 5 67591127 67591129 AGA - PIK3R1 In_Frame_Del p.R574del 0.55 TCGA-PD-A5DF-01 6 117237178 117237178 C T RFX6 Missense_Mutation p.T263M 0.38 deleterious(0) probably_damaging(0.993) TCGA-PD-A5DF-01 6 121769512 121769512 T G GJA1 3'UTR 0.32 TCGA-PD-A5DF-01 6 151694605 151694605 C G ZBTB2 Missense_Mutation p.Q56H 0.34 deleterious(0) possibly_damaging(0.694) TCGA-PD-A5DF-01 6 158296186 158296186 C T SNX9 Missense_Mutation p.S93L 0.35 tolerated(0.11) benign(0.043) TCGA-PD-A5DF-01 6 97561726 97561726 G A KLHL32 Missense_Mutation p.R232H 0.52 deleterious(0) probably_damaging(0.977) TCGA-PD-A5DF-01 7 129122874 129122874 G C STRIP2 Missense_Mutation p.W747C 0.37 deleterious(0) probably_damaging(0.995) TCGA-PD-A5DF-01 7 149523815 149523815 C G SSPO RNA 0.29 TCGA-PD-A5DF-01 7 155251239 155251239 C A EN2 Missense_Mutation p.A56E 0.64 deleterious(0.02) benign(0.016) TCGA-PD-A5DF-01 7 91503047 91503053 GAATCCA - MTERF Frame_Shift_Del p.L352Qfs*3 0.21 TCGA-PD-A5DF-01 7 99662525 99662525 G A ZSCAN21 3'UTR 0.30 TCGA-PD-A5DF-01 8 121381587 121381587 G A COL14A1 Missense_Mutation p.R1725Q 0.32 tolerated(0.05) possibly_damaging(0.801) TCGA-PD-A5DF-01 8 63973814 63973814 T C TTPA Silent p.Q278Q 0.38 TCGA-PD-A5DF-01 8 87520767 87520767 G T RMDN1 Nonsense_Mutation p.S28* 0.56 TCGA-PD-A5DF-01 X 129349844 129349844 A T ZNF280C Missense_Mutation p.S587T 0.40 tolerated(0.41) benign(0.004) TCGA-PD-A5DF-01 X 50090667 50090667 A G CCNB3 Missense_Mutation p.I1285V 0.12 deleterious(0) possibly_damaging(0.627) TCGA-QA-A7B7-01 10 118314762 118314762 T C PNLIP Missense_Mutation p.F215S 0.70 deleterious(0.01) probably_damaging(1) TCGA-QA-A7B7-01 10 35333758 35333758 T C CUL2 Missense_Mutation p.H201R 0.67 tolerated(0.81) benign(0.137) TCGA-QA-A7B7-01 10 89720726 89720726 G - PTEN Frame_Shift_Del p.G293Efs*14 0.43 TCGA-QA-A7B7-01 10 93742473 93742473 G T BTAF1 Missense_Mutation p.R726S 0.70 deleterious(0) probably_damaging(0.991) TCGA-QA-A7B7-01 11 100998998 100998998 G C PGR Silent p.V268V 0.40 TCGA-QA-A7B7-01 11 125451109 125451109 A T EI24 Missense_Mutation p.I226F 0.47 tolerated(0.11) possibly_damaging(0.483) TCGA-QA-A7B7-01 11 62415200 62415200 A T INTS5 Silent p.V784V 0.43 TCGA-QA-A7B7-01 11 6565467 6565467 C A DNHD1 Missense_Mutation p.H1249N 0.36 benign(0.026) TCGA-QA-A7B7-01 11 66243202 66243202 C A PELI3 Missense_Mutation p.A325E 0.42 deleterious(0) benign(0.172) TCGA-QA-A7B7-01 11 6703163 6703163 T A MRPL17 3'UTR 0.59 TCGA-QA-A7B7-01 11 67135026 67135026 G T CLCF1 Missense_Mutation p.R30S 0.39 tolerated(0.78) benign(0) TCGA-QA-A7B7-01 11 67219232 67219232 G C GPR152 Missense_Mutation p.P322A 0.40 tolerated(0.08) probably_damaging(0.949) TCGA-QA-A7B7-01 11 68701272 68701272 A T IGHMBP2 Silent p.P476P 0.57 TCGA-QA-A7B7-01 12 111336787 111336787 C T CCDC63 Silent p.Y400Y 0.49 TCGA-QA-A7B7-01 12 1902886 1902886 C G CACNA2D4 Missense_Mutation p.A1117P 0.40 tolerated(0.49) benign(0.002) TCGA-QA-A7B7-01 12 43828114 43828114 T G ADAMTS20 Missense_Mutation p.K885T 0.47 deleterious(0) benign(0.023) TCGA-QA-A7B7-01 12 43828156 43828156 A G ADAMTS20 Missense_Mutation p.I871T 0.43 tolerated(0.19) benign(0.268) TCGA-QA-A7B7-01 12 66838427 66838427 G A GRIP1 Nonsense_Mutation p.Q490* 0.35 TCGA-QA-A7B7-01 12 7249108 7249108 T C C1RL Missense_Mutation p.H448R 0.32 tolerated(0.26) benign(0.011) TCGA-QA-A7B7-01 12 8759531 8759531 A C AICDA Missense_Mutation p.L29R 0.38 deleterious(0) probably_damaging(0.954) TCGA-QA-A7B7-01 13 84453482 84453482 C T SLITRK1 3'UTR 0.31 TCGA-QA-A7B7-01 13 96579585 96579585 T C UGGT2 Silent p.T661T 0.43 TCGA-QA-A7B7-01 14 24028932 24028932 G T AP1G2 3'UTR 0.43 TCGA-QA-A7B7-01 14 24734864 24734864 T A RABGGTA Missense_Mutation p.Q554L 0.42 tolerated(0.13) benign(0.008) TCGA-QA-A7B7-01 14 69520835 69520835 C T DCAF5 Silent p.V856V 0.33 TCGA-QA-A7B7-01 14 73640582 73640582 A C PSEN1 Intron 0.33 TCGA-QA-A7B7-01 14 93397788 93397788 C G CHGA Silent p.T183T 0.83 TCGA-QA-A7B7-01 15 59500993 59500993 C A MYO1E Missense_Mutation p.V473L 0.38 tolerated(0.33) benign(0.329) TCGA-QA-A7B7-01 15 63978599 63978599 A G HERC1 Silent p.L2062L 0.56 TCGA-QA-A7B7-01 15 75942327 75942327 C T SNX33 Missense_Mutation p.T295I 0.38 deleterious(0) probably_damaging(0.998) TCGA-QA-A7B7-01 16 1961528 1961528 G A HS3ST6 3'UTR 0.40 TCGA-QA-A7B7-01 16 20817836 20817836 C A AC004381.6 5'UTR 0.58 TCGA-QA-A7B7-01 16 2880717 2880717 C T ZG16B Silent p.G61G 0.19 TCGA-QA-A7B7-01 16 312457 312457 C T ITFG3 Silent p.L292L 0.35 TCGA-QA-A7B7-01 16 67184423 67184423 G T B3GNT9 5'UTR 0.60 TCGA-QA-A7B7-01 16 70698047 70698047 C T MTSS1L Missense_Mutation p.V593M 0.69 deleterious(0.02) probably_damaging(0.999) TCGA-QA-A7B7-01 17 20860010 20860010 A T RP11-381P6.1 RNA 0.43 TCGA-QA-A7B7-01 17 40985471 40985484 GCAGGCTGCCGGCG - PSME3 5'Flank 0.62 TCGA-QA-A7B7-01 17 47784394 47784394 C T SLC35B1 Silent p.E47E 0.42 TCGA-QA-A7B7-01 17 7577534 7577534 C A TP53 Missense_Mutation p.R249S 0.74 deleterious(0) probably_damaging(0.994) TCGA-QA-A7B7-01 18 30257147 30257147 T C KLHL14 Missense_Mutation p.S579G 0.43 deleterious(0) probably_damaging(0.95) TCGA-QA-A7B7-01 18 55020075 55020075 G C ST8SIA3 5'UTR 0.83 TCGA-QA-A7B7-01 18 77623988 77623988 C A KCNG2 Nonsense_Mutation p.Y107* 0.92 TCGA-QA-A7B7-01 19 21476555 21476555 A C ZNF708 Missense_Mutation p.S405A 0.29 deleterious(0.05) benign(0.216) TCGA-QA-A7B7-01 19 33696163 33696163 C T LRP3 Nonsense_Mutation p.Q163* 0.50 TCGA-QA-A7B7-01 19 34839933 34839933 C T KIAA0355 Silent p.H900H 0.49 TCGA-QA-A7B7-01 19 40396028 40396028 C T FCGBP Missense_Mutation p.G2457R 0.13 benign(0.027) TCGA-QA-A7B7-01 19 42730688 42730688 T A ZNF526 3'UTR 0.37 TCGA-QA-A7B7-01 19 51021678 51021678 G A LRRC4B Missense_Mutation p.T431M 0.51 deleterious(0.01) probably_damaging(0.963) TCGA-QA-A7B7-01 19 51169904 51169904 G T SHANK1 Silent p.G1771G 0.42 TCGA-QA-A7B7-01 19 53770065 53770065 A G VN1R4 Missense_Mutation p.L285P 0.40 deleterious(0) probably_damaging(0.997) TCGA-QA-A7B7-01 19 55221378 55221378 C A AC098784.2 3'Flank 0.06 TCGA-QA-A7B7-01 19 6714044 6714046 GTA - C3 In_Frame_Del p.Y244del 0.46 TCGA-QA-A7B7-01 1 100350158 100350158 T C AGL Silent p.V860V 0.36 TCGA-QA-A7B7-01 1 107600691 107600691 G T PRMT6 3'UTR 0.45 TCGA-QA-A7B7-01 1 118065534 118065534 A G MAN1A2 Silent p.L627L 0.55 TCGA-QA-A7B7-01 1 152187996 152187996 C T HRNR Missense_Mutation p.G2037S 0.20 unknown(0) TCGA-QA-A7B7-01 1 152280081 152280081 G T FLG Silent p.A2427A 0.34 TCGA-QA-A7B7-01 1 156905755 156905755 A C ARHGEF11 3'UTR 0.25 TCGA-QA-A7B7-01 1 158435495 158435495 C A OR10K1 Silent p.T48T 0.58 TCGA-QA-A7B7-01 1 172628546 172628546 C G FASLG Missense_Mutation p.P69A 0.60 tolerated(0.43) benign(0.053) TCGA-QA-A7B7-01 1 172628547 172628547 C A FASLG Missense_Mutation p.P69Q 0.59 tolerated(0.41) benign(0.165) TCGA-QA-A7B7-01 1 186017888 186017888 A G HMCN1 Missense_Mutation p.Q2165R 0.20 possibly_damaging(0.634) TCGA-QA-A7B7-01 1 201837827 201837827 T C IPO9 Missense_Mutation p.I636T 0.56 tolerated(0.7) benign(0.017) TCGA-QA-A7B7-01 1 217915436 217915436 A T SPATA17 Missense_Mutation p.K172M 0.60 deleterious(0) possibly_damaging(0.832) TCGA-QA-A7B7-01 1 236720605 236720605 C T HEATR1 Missense_Mutation p.E1749K 0.32 deleterious(0.04) benign(0.148) TCGA-QA-A7B7-01 1 247031037 247031037 G T AHCTF1 Silent p.I1064I 0.57 TCGA-QA-A7B7-01 1 247978677 247978677 C T OR14A16 Missense_Mutation p.D119N 0.68 deleterious(0.04) possibly_damaging(0.84) TCGA-QA-A7B7-01 1 2524344 2524344 G A MMEL1 Silent p.H643H 0.46 TCGA-QA-A7B7-01 1 26655355 26655355 C T AIM1L Missense_Mutation p.E568K 0.46 deleterious(0) probably_damaging(0.937) TCGA-QA-A7B7-01 1 55527146 55527146 G A PCSK9 Missense_Mutation p.A594T 0.45 tolerated(0.13) benign(0.075) TCGA-QA-A7B7-01 1 63998376 63998376 C T EFCAB7 Silent p.A145A 0.39 TCGA-QA-A7B7-01 1 87379756 87379756 C A SEP15 Silent p.V10V 0.32 TCGA-QA-A7B7-01 20 1552656 1552656 C T SIRPB1 Missense_Mutation p.G154D 0.40 deleterious(0) possibly_damaging(0.9) TCGA-QA-A7B7-01 20 36974893 36974893 C T LBP 5'UTR 0.43 TCGA-QA-A7B7-01 20 8113326 8113326 G T PLCB1 Missense_Mutation p.A10S 0.50 tolerated(0.1) benign(0.013) TCGA-QA-A7B7-01 21 33887198 33887198 G T EVA1C Missense_Mutation p.V342F 0.60 deleterious(0) probably_damaging(0.921) TCGA-QA-A7B7-01 21 44117597 44117597 C T PDE9A Intron 0.26 TCGA-QA-A7B7-01 2 110015366 110015366 C G SH3RF3 Missense_Mutation p.D422E 0.47 tolerated(1) benign(0.002) TCGA-QA-A7B7-01 2 136567036 136567036 C T LCT Missense_Mutation p.A961T 0.38 deleterious(0.04) possibly_damaging(0.854) TCGA-QA-A7B7-01 2 152497166 152497166 T G NEB Missense_Mutation p.E2796D 0.39 benign(0.008) TCGA-QA-A7B7-01 2 158115721 158115721 T C GALNT5 Missense_Mutation p.V376A 0.42 tolerated(1) benign(0.001) TCGA-QA-A7B7-01 2 177016208 177016208 C T HOXD3 5'UTR 0.47 TCGA-QA-A7B7-01 2 179611817 179611817 C T TTN Intron 0.43 TCGA-QA-A7B7-01 2 196620969 196620969 C T DNAH7 Missense_Mutation p.S3825N 0.41 tolerated(1) benign(0.008) TCGA-QA-A7B7-01 2 219735837 219735837 G T WNT6 Missense_Mutation p.A57S 0.44 tolerated(0.73) benign(0.013) TCGA-QA-A7B7-01 2 219867596 219867596 G T CCDC108 3'UTR 0.50 TCGA-QA-A7B7-01 2 241569984 241569984 C A GPR35 Missense_Mutation p.D236E 0.36 tolerated(0.32) benign(0.037) TCGA-QA-A7B7-01 2 31010123 31010123 G T CAPN13 Silent p.T23T 0.40 TCGA-QA-A7B7-01 2 54859797 54859797 C T SPTBN1 Missense_Mutation p.A1220V 0.39 deleterious(0.04) possibly_damaging(0.612) TCGA-QA-A7B7-01 2 5839418 5839418 T C SOX11 3'UTR 0.38 TCGA-QA-A7B7-01 2 71654499 71654499 G A ZNF638 Missense_Mutation p.V1834I 0.29 tolerated(0.44) benign(0.015) TCGA-QA-A7B7-01 2 74699851 74699851 G T MRPL53 5'UTR 0.38 TCGA-QA-A7B7-01 3 100414007 100414007 G A GPR128 3'UTR 0.44 TCGA-QA-A7B7-01 3 108407750 108407750 C T DZIP3 Silent p.C1165C 0.36 TCGA-QA-A7B7-01 3 185226333 185226333 C T LIPH 3'UTR 0.36 TCGA-QA-A7B7-01 3 193175188 193175188 G A ATP13A4 Missense_Mutation p.P581S 0.41 deleterious(0.01) probably_damaging(1) TCGA-QA-A7B7-01 3 52570739 52570739 C T SMIM4 5'UTR 0.58 TCGA-QA-A7B7-01 3 85935378 85935378 C A CADM2 Missense_Mutation p.P137T 0.35 deleterious(0.01) possibly_damaging(0.844) TCGA-QA-A7B7-01 3 89391190 89391190 G T EPHA3 Missense_Mutation p.S419I 0.46 deleterious(0) benign(0.238) TCGA-QA-A7B7-01 4 121958596 121958596 G T NDNF Missense_Mutation p.P177H 0.45 deleterious(0) probably_damaging(0.999) TCGA-QA-A7B7-01 4 156023 156023 C A ZNF718 RNA 0.65 TCGA-QA-A7B7-01 4 156030 156030 T A ZNF718 RNA 0.60 TCGA-QA-A7B7-01 4 183063407 183063407 T A AC108142.1 RNA 0.42 TCGA-QA-A7B7-01 4 54915246 54915246 T C CHIC2 Missense_Mutation p.N69S 0.43 tolerated(1) benign(0.004) TCGA-QA-A7B7-01 4 68693026 68693026 G T TMPRSS11D Missense_Mutation p.P302H 0.39 tolerated(0.05) possibly_damaging(0.847) TCGA-QA-A7B7-01 5 11159716 11159716 C T CTNND2 Missense_Mutation p.V711M 0.42 deleterious(0.01) benign(0.407) TCGA-QA-A7B7-01 5 121411127 121411127 A T LOX Missense_Mutation p.Y284N 0.40 deleterious(0.03) probably_damaging(0.954) TCGA-QA-A7B7-01 5 140811445 140811445 C A PCDHGA12 Missense_Mutation p.D373E 0.49 deleterious_low_confidence(0) probably_damaging(1) TCGA-QA-A7B7-01 5 33881413 33881415 CTT - ADAMTS12 In_Frame_Del p.K100del 0.46 TCGA-QA-A7B7-01 5 34807938 34807938 G T RAI14 Missense_Mutation p.G122W 0.43 deleterious(0) probably_damaging(1) TCGA-QA-A7B7-01 5 6737736 6737736 C G PAPD7 Missense_Mutation p.P27R 0.39 deleterious(0.01) probably_damaging(1) TCGA-QA-A7B7-01 5 850812 850812 C A ZDHHC11 5'UTR 0.65 TCGA-QA-A7B7-01 6 126202239 126202239 C A NCOA7 Missense_Mutation p.L155I 0.42 tolerated(0.08) probably_damaging(0.999) TCGA-QA-A7B7-01 6 146708066 146708066 C A GRM1 Missense_Mutation p.T548K 0.40 deleterious(0) probably_damaging(0.993) TCGA-QA-A7B7-01 6 169639701 169639701 G T THBS2 Nonsense_Mutation p.C374* 0.43 TCGA-QA-A7B7-01 6 26032226 26032226 C A HIST1H3B Silent p.L21L 0.34 TCGA-QA-A7B7-01 6 43273742 43273763 CATGTACATGCCATACTTCAGG - CRIP3 Intron 0.24 TCGA-QA-A7B7-01 6 73331992 73331992 G T KCNQ5 Silent p.A25A 0.38 TCGA-QA-A7B7-01 6 80752053 80752053 T C TTK 3'UTR 0.54 TCGA-QA-A7B7-01 6 88854612 88854612 T A CNR1 Missense_Mutation p.T128S 0.38 tolerated(0.67) probably_damaging(0.942) TCGA-QA-A7B7-01 7 128449530 128449530 A G CCDC136 Silent p.T544T 0.83 TCGA-QA-A7B7-01 7 158540904 158540904 C T ESYT2 Missense_Mutation p.R569H 0.82 tolerated(0.08) benign(0.009) TCGA-QA-A7B7-01 7 2649728 2649728 G A IQCE Missense_Mutation p.V674I 0.38 tolerated(0.33) benign(0.433) TCGA-QA-A7B7-01 7 6098816 6098816 C A EIF2AK1 5'UTR 0.50 TCGA-QA-A7B7-01 8 100999806 100999806 A G RGS22 Silent p.I1020I 0.91 TCGA-QA-A7B7-01 8 107782252 107782252 G T ABRA Missense_Mutation p.T56N 0.81 tolerated(0.36) possibly_damaging(0.512) TCGA-QA-A7B7-01 8 11995788 11995788 G A USP17L2 Missense_Mutation p.A161V 0.38 deleterious(0) probably_damaging(0.999) TCGA-QA-A7B7-01 8 142151480 142151480 A T DENND3 Intron 0.83 TCGA-QA-A7B7-01 8 21986325 21986325 C G HR Missense_Mutation p.G120A 0.78 deleterious_low_confidence(0.02) benign(0.213) TCGA-QA-A7B7-01 8 26365742 26365742 T A PNMA2 Missense_Mutation p.E177V 0.83 deleterious(0.01) possibly_damaging(0.518) TCGA-QA-A7B7-01 8 59059022 59059022 C T FAM110B Missense_Mutation p.A78V 0.09 tolerated(0.78) benign(0.037) TCGA-QA-A7B7-01 9 135176017 135176017 T C SETX Missense_Mutation p.M1850V 0.37 tolerated(0.51) benign(0.002) TCGA-QA-A7B7-01 9 137715262 137715262 G A COL5A1 Missense_Mutation p.G1549S 0.35 unknown(0) TCGA-QA-A7B7-01 9 138515846 138515846 T C GLT6D1 3'UTR 0.48 TCGA-QA-A7B7-01 9 140865851 140865851 C T CACNA1B Silent p.R450R 0.45 TCGA-QA-A7B7-01 X 122538600 122538600 G T GRIA3 Silent p.L445L 0.82 TCGA-QA-A7B7-01 X 122538601 122538601 G T GRIA3 Nonsense_Mutation p.E446* 0.82 TCGA-QA-A7B7-01 X 71426314 71426314 A G ERCC6L Missense_Mutation p.I768T 0.87 deleterious(0.04) benign(0.287) TCGA-RC-A6M3-01 10 101989281 101989281 C A CHUK Silent p.R3R 0.25 TCGA-RC-A6M3-01 10 106025865 106025865 C T GSTO1 Silent p.T163T 0.26 TCGA-RC-A6M3-01 11 22359982 22359982 G C SLC17A6 5'UTR 0.50 TCGA-RC-A6M3-01 11 56380259 56380259 C T OR5M1 Silent p.T240T 0.44 TCGA-RC-A6M3-01 11 64496461 64496461 G A RASGRP2 Missense_Mutation p.R549W 0.36 deleterious(0) probably_damaging(0.999) TCGA-RC-A6M3-01 11 72406835 72406836 - TGGGA ARAP1 Frame_Shift_Ins p.Q1116Hfs*44 0.49 TCGA-RC-A6M3-01 11 73020542 73020542 C T ARHGEF17 Missense_Mutation p.H287Y 0.54 deleterious_low_confidence(0.01) benign(0.064) TCGA-RC-A6M3-01 12 12980267 12980267 G A DDX47 Missense_Mutation p.M398I 0.22 tolerated(0.36) benign(0) TCGA-RC-A6M3-01 12 52754698 52754698 G A KRT85 Missense_Mutation p.P488L 0.45 tolerated(0.11) probably_damaging(0.991) TCGA-RC-A6M3-01 12 52793926 52793926 C T KRT82 Missense_Mutation p.C262Y 0.07 tolerated(0.79) benign(0.002) TCGA-RC-A6M3-01 12 55524501 55524501 A G OR9K2 Missense_Mutation p.N317D 0.40 deleterious(0) probably_damaging(0.984) TCGA-RC-A6M3-01 12 66856725 66856725 C G GRIP1 Missense_Mutation p.A341P 0.38 tolerated(0.68) benign(0.014) TCGA-RC-A6M3-01 13 95363707 95363707 G A SOX21 Silent p.T199T 0.47 TCGA-RC-A6M3-01 14 21269973 21269973 G A RNASE1 Silent p.V85V 0.49 TCGA-RC-A6M3-01 15 59500477 59500477 C T LDHAL6B 3'UTR 0.36 TCGA-RC-A6M3-01 15 63446212 63446212 C G RPS27L 3'UTR 0.19 TCGA-RC-A6M3-01 15 73766189 73766189 A C C15orf60 Missense_Mutation p.E59A 0.19 deleterious(0) possibly_damaging(0.853) TCGA-RC-A6M3-01 15 78384952 78384952 G T SH2D7 Missense_Mutation p.S9I 0.20 tolerated(0.2) possibly_damaging(0.483) TCGA-RC-A6M3-01 16 1630796 1630796 C T IFT140 Silent p.T496T 0.39 TCGA-RC-A6M3-01 16 31235616 31235616 C T TRIM72 Missense_Mutation p.P325L 0.49 deleterious(0) possibly_damaging(0.71) TCGA-RC-A6M3-01 16 31419205 31419205 A G ITGAD Missense_Mutation p.K326R 0.18 tolerated(0.08) benign(0.075) TCGA-RC-A6M3-01 16 84163813 84163813 C T HSDL1 Silent p.L148L 0.21 TCGA-RC-A6M3-01 16 88499415 88499415 C T ZNF469 Missense_Mutation p.T1818M 0.27 benign(0.006) TCGA-RC-A6M3-01 16 88801357 88801357 T C PIEZO1 Missense_Mutation p.S592G 0.16 deleterious(0.01) probably_damaging(0.917) TCGA-RC-A6M3-01 17 11784551 11784551 T C DNAH9 Missense_Mutation p.C3543R 0.60 possibly_damaging(0.652) TCGA-RC-A6M3-01 17 16527675 16527675 T C ZNF624 Missense_Mutation p.I175M 0.60 tolerated(0.22) possibly_damaging(0.459) TCGA-RC-A6M3-01 17 39383429 39383429 T G KRTAP9-2 Nonstop_Mutation p.*175Gext*24 0.29 TCGA-RC-A6M3-01 17 45367139 45367139 T A ITGB3 Nonsense_Mutation p.Y344* 0.07 TCGA-RC-A6M3-01 17 59560352 59560352 T A TBX4 Silent p.P371P 0.19 TCGA-RC-A6M3-01 17 78972941 78972941 G A CHMP6 Silent p.V198V 0.38 TCGA-RC-A6M3-01 18 55144054 55144054 C T ONECUT2 3'UTR 0.23 TCGA-RC-A6M3-01 18 70423359 70423359 A C NETO1 Missense_Mutation p.F298V 0.17 deleterious(0.05) probably_damaging(0.998) TCGA-RC-A6M3-01 19 14150478 14150478 G A IL27RA Splice_Site p.X126_splice 0.34 TCGA-RC-A6M3-01 19 1969815 1969815 G T CSNK1G2 Missense_Mutation p.G15V 0.10 tolerated_low_confidence(0.08) benign(0.024) TCGA-RC-A6M3-01 19 21720356 21720356 A G ZNF429 Missense_Mutation p.K501E 0.33 tolerated(0.81) benign(0.102) TCGA-RC-A6M3-01 19 36545843 36545843 G C WDR62 5'UTR 0.31 TCGA-RC-A6M3-01 19 50306439 50306439 G A AP2A1 Silent p.Q771Q 0.41 TCGA-RC-A6M3-01 19 57058902 57058902 C G ZFP28 Missense_Mutation p.A109G 0.33 deleterious(0) possibly_damaging(0.876) TCGA-RC-A6M3-01 19 57088623 57088623 A G ZNF470 Missense_Mutation p.R276G 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-RC-A6M3-01 19 57931549 57931549 A G ZNF17 Missense_Mutation p.N230S 0.42 tolerated(0.51) benign(0.124) TCGA-RC-A6M3-01 19 8161856 8161856 G A FBN3 Silent p.C1774C 0.36 TCGA-RC-A6M3-01 19 9297230 9297230 T C OR7D2 Missense_Mutation p.V258A 0.35 deleterious_low_confidence(0.02) benign(0.327) TCGA-RC-A6M3-01 1 156917232 156917232 C T ARHGEF11 Silent p.V784V 0.47 TCGA-RC-A6M3-01 1 158913594 158913594 G T PYHIN1 Missense_Mutation p.R339S 0.15 tolerated(0.33) benign(0.371) TCGA-RC-A6M3-01 1 160282950 160282950 C T COPA Missense_Mutation p.V284I 0.12 tolerated(0.33) benign(0.005) TCGA-RC-A6M3-01 1 21276594 21276594 C T EIF4G3 Missense_Mutation p.S192N 0.25 deleterious(0.02) benign(0.193) TCGA-RC-A6M3-01 1 228871746 228871746 T A RHOU Missense_Mutation p.F86Y 0.33 tolerated(0.89) benign(0.383) TCGA-RC-A6M3-01 1 237693789 237693789 A G RYR2 Missense_Mutation p.K962R 0.22 benign(0.001) TCGA-RC-A6M3-01 1 43805039 43805039 T C MPL Silent p.D163D 0.28 TCGA-RC-A6M3-01 1 52269532 52269532 T C NRD1 Missense_Mutation p.E824G 0.34 deleterious(0) probably_damaging(0.937) TCGA-RC-A6M3-01 1 52344432 52344432 C G NRD1 5'UTR 0.50 TCGA-RC-A6M3-01 1 52732378 52732378 A C ZFYVE9 Missense_Mutation p.N777T 0.15 tolerated(0.06) probably_damaging(1) TCGA-RC-A6M3-01 1 7887481 7887481 G A PER3 Missense_Mutation p.G823D 0.36 tolerated(0.2) benign(0.095) TCGA-RC-A6M3-01 20 40085989 40085989 C T CHD6 Missense_Mutation p.R915H 0.54 deleterious(0) probably_damaging(1) TCGA-RC-A6M3-01 2 175436295 175436295 T C WIPF1 Intron 0.15 TCGA-RC-A6M3-01 2 216261911 216261911 T C FN1 Missense_Mutation p.N1185D 0.15 deleterious(0.01) probably_damaging(0.935) TCGA-RC-A6M3-01 2 242439594 242439594 T C STK25 Missense_Mutation p.I141V 0.29 tolerated(0.14) possibly_damaging(0.633) TCGA-RC-A6M3-01 2 25965211 25965211 T C ASXL2 Missense_Mutation p.N1332S 0.09 tolerated(0.23) probably_damaging(0.997) TCGA-RC-A6M3-01 2 98340508 98340508 C A ZAP70 Missense_Mutation p.D3E 0.68 deleterious(0.04) benign(0.001) TCGA-RC-A6M3-01 3 121215700 121215700 G T POLQ Missense_Mutation p.R745S 0.41 deleterious(0) probably_damaging(1) TCGA-RC-A6M3-01 3 136057110 136057110 T G STAG1 Missense_Mutation p.M1255L 0.20 tolerated_low_confidence(0.3) benign(0.001) TCGA-RC-A6M3-01 3 149485434 149485434 A G ANKUB1 Missense_Mutation p.F339L 0.15 tolerated(0.47) benign(0.002) TCGA-RC-A6M3-01 3 169867033 169867033 C G PHC3 Splice_Site p.X139_splice 0.38 TCGA-RC-A6M3-01 3 185997721 185997721 G A DGKG Silent p.D237D 0.26 TCGA-RC-A6M3-01 3 194080170 194080170 C T LRRC15 Missense_Mutation p.A541T 0.41 tolerated(0.71) benign(0.008) TCGA-RC-A6M3-01 3 195538745 195538745 A C MUC4 5'UTR 0.22 TCGA-RC-A6M3-01 3 25833159 25833159 G T OXSM Silent p.V216V 0.23 TCGA-RC-A6M3-01 3 49848783 49848783 C G UBA7 Missense_Mutation p.V349L 0.48 tolerated(1) benign(0.002) TCGA-RC-A6M3-01 3 9958892 9958892 G A IL17RC 5'UTR 0.44 TCGA-RC-A6M3-01 4 102117189 102117189 G A PPP3CA Missense_Mutation p.A48V 0.28 tolerated(0.06) benign(0.103) TCGA-RC-A6M3-01 4 119154228 119154228 C G NDST3 Missense_Mutation p.S627R 0.32 deleterious(0) possibly_damaging(0.748) TCGA-RC-A6M3-01 4 124324197 124324198 - T SPRY1 3'UTR 0.12 TCGA-RC-A6M3-01 4 148984418 148984418 C T ARHGAP10 Missense_Mutation p.P716L 0.24 tolerated(0.39) benign(0) TCGA-RC-A6M3-01 4 157892010 157892019 GGCCGGCCAG - PDGFC Frame_Shift_Del p.L13Rfs*11 0.34 TCGA-RC-A6M3-01 4 77660340 77660340 A C SHROOM3 Silent p.S338S 0.23 TCGA-RC-A6M3-01 4 83970469 83970469 A T COPS4 Missense_Mutation p.Q102L 0.25 deleterious(0) probably_damaging(0.945) TCGA-RC-A6M3-01 5 115782757 115782757 G A SEMA6A Missense_Mutation p.P882L 0.33 deleterious(0) probably_damaging(0.999) TCGA-RC-A6M3-01 5 140741649 140741649 A G PCDHGB2 Silent p.G649G 0.38 TCGA-RC-A6M3-01 5 178391941 178391941 A G ZNF454 Missense_Mutation p.E179G 0.10 tolerated(0.06) benign(0.328) TCGA-RC-A6M3-01 5 5200316 5200316 T C ADAMTS16 Missense_Mutation p.L462S 0.26 deleterious(0) probably_damaging(1) TCGA-RC-A6M3-01 6 107956286 107956286 G A SOBP Silent p.P746P 0.31 TCGA-RC-A6M3-01 6 119338099 119338099 T C FAM184A Missense_Mutation p.E448G 0.35 deleterious(0) benign(0.272) TCGA-RC-A6M3-01 6 154414480 154414480 G C OPRM1 Intron 0.36 TCGA-RC-A6M3-01 6 32119914 32119914 A T PRRT1 5'Flank 0.30 TCGA-RC-A6M3-01 6 63990999 63990999 A C LGSN Missense_Mutation p.L153V 0.14 deleterious(0) benign(0.229) TCGA-RC-A6M3-01 6 75861697 75861697 T C COL12A1 Missense_Mutation p.M1296V 0.33 benign(0.092) TCGA-RC-A6M3-01 6 84270639 84270639 C G SNAP91 Missense_Mutation p.V824L 0.33 tolerated(0.1) possibly_damaging(0.542) TCGA-RC-A6M3-01 7 101944556 101944556 C T SH2B2 Missense_Mutation p.P284L 0.27 deleterious(0.03) possibly_damaging(0.893) TCGA-RC-A6M3-01 7 123672011 123672011 G C TMEM229A Missense_Mutation p.I349M 0.24 deleterious(0) probably_damaging(0.996) TCGA-RC-A6M3-01 7 12414692 12414692 G T VWDE Missense_Mutation p.Q396K 0.25 tolerated(0.3) benign(0.003) TCGA-RC-A6M3-01 7 49977181 49977181 T A ZPBP Silent p.G333G 0.19 TCGA-RC-A6M3-01 7 5754691 5754691 G C RNF216 Missense_Mutation p.S609C 0.32 deleterious(0) probably_damaging(0.999) TCGA-RC-A6M3-01 7 76908085 76908085 T C CCDC146 Missense_Mutation p.I486T 0.37 tolerated(0.13) benign(0.061) TCGA-RC-A6M3-01 8 133078139 133078139 A T HHLA1 3'Flank 0.12 TCGA-RC-A6M3-01 8 14181674 14181674 G A SGCZ Nonsense_Mutation p.R92* 0.18 TCGA-RC-A6M3-01 8 39836668 39836668 G C IDO2 Missense_Mutation p.G106A 0.14 tolerated(0.39) possibly_damaging(0.854) TCGA-RC-A6M3-01 8 55539235 55539235 T C RP1 Silent p.P931P 0.15 TCGA-RC-A6M3-01 8 72958753 72958753 G T TRPA1 Missense_Mutation p.L686I 0.11 deleterious(0.02) benign(0.079) TCGA-RC-A6M3-01 9 119188314 119188314 C A ASTN2 Missense_Mutation p.S1228I 0.17 deleterious(0.04) unknown(0) TCGA-RC-A6M3-01 9 134357801 134357801 G T PRRC2B Missense_Mutation p.S1676I 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-RC-A6M3-01 9 136218901 136223784 9:136218901-136223784 A SURF2 Splice_Site 0.36 TCGA-RC-A6M3-01 9 136597702 136597702 G A SARDH Missense_Mutation p.P118L 0.47 deleterious(0) probably_damaging(1) TCGA-RC-A6M3-01 9 74355007 74355007 A G TMEM2 Silent p.S392S 0.20 TCGA-RC-A6M3-01 9 74843029 74843029 C G GDA Intron 0.20 TCGA-RC-A6M3-01 X 114426338 114426338 C A RBMXL3 Silent p.R778R 0.20 TCGA-RC-A6M3-01 X 117053617 117053617 C T KLHL13 Missense_Mutation p.R149K 0.59 tolerated(1) benign(0.003) TCGA-RC-A6M3-01 X 40562816 40562816 T C MED14 Missense_Mutation p.I431V 0.55 tolerated(0.4) benign(0.003) TCGA-RC-A6M3-01 Y 4967709 4967709 A T PCDH11Y Missense_Mutation p.D697V 0.67 deleterious(0) probably_damaging(1) TCGA-RC-A6M4-01 10 100995494 100995494 T A HPSE2 Silent p.L22L 0.48 TCGA-RC-A6M4-01 10 102269083 102269083 T C SEC31B Missense_Mutation p.N130S 0.29 deleterious(0.01) possibly_damaging(0.893) TCGA-RC-A6M4-01 10 1094803 1094803 C T IDI1 Splice_Site p.X47_splice 0.43 TCGA-RC-A6M4-01 10 126715391 126715391 T A CTBP2 Missense_Mutation p.Q313L 0.89 deleterious_low_confidence(0.04) benign(0.077) TCGA-RC-A6M4-01 10 22829005 22829005 T A PIP4K2A Splice_Site p.X346_splice 0.47 TCGA-RC-A6M4-01 10 27793366 27793366 G C RAB18 Missense_Mutation p.S23T 0.54 deleterious(0.03) possibly_damaging(0.905) TCGA-RC-A6M4-01 10 88415951 88415951 A G OPN4 Missense_Mutation p.T62A 0.43 deleterious(0) possibly_damaging(0.843) TCGA-RC-A6M4-01 10 91520384 91520384 T C KIF20B Silent p.N1554N 0.50 TCGA-RC-A6M4-01 10 93652 93652 T A TUBB8 Missense_Mutation p.H227L 0.37 deleterious_low_confidence(0) possibly_damaging(0.626) TCGA-RC-A6M4-01 11 122954395 122954395 A T CLMP Silent p.S183S 0.23 TCGA-RC-A6M4-01 11 134188589 134188589 C A GLB1L3 Missense_Mutation p.P615H 0.45 deleterious(0) probably_damaging(1) TCGA-RC-A6M4-01 11 4824853 4824853 G T OR52R1 Missense_Mutation p.A253D 0.21 deleterious(0) probably_damaging(0.968) TCGA-RC-A6M4-01 11 64082579 64082579 G T ESRRA Missense_Mutation p.E283D 0.08 tolerated(0.17) benign(0.019) TCGA-RC-A6M4-01 11 66029180 66029180 G T KLC2 Intron 0.76 TCGA-RC-A6M4-01 11 7437386 7437386 A G SYT9 Silent p.G386G 0.26 TCGA-RC-A6M4-01 11 82693112 82693112 A G RAB30 3'UTR 0.44 TCGA-RC-A6M4-01 11 89531677 89531677 C T TRIM49 Missense_Mutation p.S327N 0.29 tolerated(0.25) benign(0.028) TCGA-RC-A6M4-01 11 94282489 94282489 A G FUT4 3'UTR 0.33 TCGA-RC-A6M4-01 12 121779809 121779809 T C ANAPC5 Silent p.Q218Q 0.45 TCGA-RC-A6M4-01 12 123702951 123702951 T A MPHOSPH9 Missense_Mutation p.E171V 0.24 deleterious(0) benign(0.296) TCGA-RC-A6M4-01 12 31576572 31576572 T A DENND5B Missense_Mutation p.Q810L 0.63 tolerated(0.17) benign(0.06) TCGA-RC-A6M4-01 12 42711634 42711634 A G ZCRB1 Silent p.D60D 0.62 TCGA-RC-A6M4-01 12 48370680 48370680 T A COL2A1 Missense_Mutation p.D1117V 0.41 unknown(0) TCGA-RC-A6M4-01 12 49061538 49061538 G T KANSL2 Missense_Mutation p.A304D 0.19 tolerated(0.2) possibly_damaging(0.632) TCGA-RC-A6M4-01 12 49433836 49433836 C T KMT2D Missense_Mutation p.G2573S 0.17 probably_damaging(0.954) TCGA-RC-A6M4-01 12 49943273 49943273 C T KCNH3 Silent p.R506R 0.30 TCGA-RC-A6M4-01 12 53553988 53553988 T G CSAD Missense_Mutation p.D388A 0.15 deleterious(0) probably_damaging(1) TCGA-RC-A6M4-01 12 55846722 55846722 A T OR6C2 Missense_Mutation p.H242L 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-RC-A6M4-01 12 69233083 69233083 A C MDM2 Missense_Mutation p.E316D 0.46 deleterious(0.01) benign(0.405) TCGA-RC-A6M4-01 12 97045411 97045411 T A C12orf55 Missense_Mutation p.C1640S 0.62 deleterious(0) possibly_damaging(0.851) TCGA-RC-A6M4-01 13 21753041 21753041 A T MRP63 3'UTR 0.74 TCGA-RC-A6M4-01 13 49282544 49282544 G T CYSLTR2 3'UTR 0.82 TCGA-RC-A6M4-01 14 101350239 101350239 T A RTL1 Missense_Mutation p.Q296L 0.48 deleterious(0) probably_damaging(0.998) TCGA-RC-A6M4-01 14 105414443 105414443 C A AHNAK2 Missense_Mutation p.V2449L 0.35 benign(0.002) TCGA-RC-A6M4-01 14 21058375 21058375 T C RNASE12 3'UTR 0.60 TCGA-RC-A6M4-01 14 56122805 56122805 A G KTN1 Silent p.L949L 0.46 TCGA-RC-A6M4-01 14 88652001 88652001 A T KCNK10 Missense_Mutation p.S504T 0.48 tolerated_low_confidence(0.11) benign(0.005) TCGA-RC-A6M4-01 14 99641711 99641711 A T BCL11B Missense_Mutation p.S488T 0.43 deleterious(0.02) possibly_damaging(0.766) TCGA-RC-A6M4-01 15 22848918 22848918 A T TUBGCP5 Missense_Mutation p.Q322L 0.54 deleterious(0) probably_damaging(0.95) TCGA-RC-A6M4-01 15 29429300 29429300 G A FAM189A1 Missense_Mutation p.P243L 0.35 deleterious(0) probably_damaging(0.981) TCGA-RC-A6M4-01 15 43574767 43574767 T A TGM7 Silent p.P352P 0.55 TCGA-RC-A6M4-01 15 67477190 67477190 A G SMAD3 Missense_Mutation p.K333E 0.57 deleterious(0) possibly_damaging(0.682) TCGA-RC-A6M4-01 15 69745186 69745186 C T RPLP1 5'UTR 0.57 TCGA-RC-A6M4-01 15 73615218 73615218 G A HCN4 Silent p.P1072P 0.67 TCGA-RC-A6M4-01 16 2338103 2338103 G T ABCA3 Silent p.S976S 0.43 TCGA-RC-A6M4-01 16 27751968 27751968 T A KIAA0556 Missense_Mutation p.W784R 0.43 tolerated(0.4) benign(0.005) TCGA-RC-A6M4-01 16 30779293 30779293 G A RNF40 Missense_Mutation p.R503Q 0.34 deleterious(0) probably_damaging(0.967) TCGA-RC-A6M4-01 16 3716009 3716009 C T TRAP1 Missense_Mutation p.R449Q 0.46 deleterious(0.01) possibly_damaging(0.804) TCGA-RC-A6M4-01 16 51174758 51174758 C T SALL1 Missense_Mutation p.G459R 0.50 deleterious(0) probably_damaging(0.997) TCGA-RC-A6M4-01 16 55850865 55850865 A G CES1 Missense_Mutation p.S306P 0.12 tolerated(0.34) benign(0.002) TCGA-RC-A6M4-01 16 67320230 67320230 T C PLEKHG4 Silent p.D832D 0.43 TCGA-RC-A6M4-01 16 69377168 69377168 A G TMED6 3'UTR 0.29 TCGA-RC-A6M4-01 16 69377250 69377250 A G TMED6 3'UTR 0.46 TCGA-RC-A6M4-01 16 70698128 70698128 G A MTSS1L Missense_Mutation p.R566C 0.47 deleterious(0) probably_damaging(0.998) TCGA-RC-A6M4-01 16 81076059 81076059 T C ATMIN Silent p.T212T 0.45 TCGA-RC-A6M4-01 16 81198264 81198264 C A PKD1L2 RNA 0.08 TCGA-RC-A6M4-01 17 15162456 15162456 A G PMP22 Missense_Mutation p.S45P 0.89 tolerated(0.21) benign(0.006) TCGA-RC-A6M4-01 17 19698995 19698995 G T ULK2 Missense_Mutation p.P681T 0.94 tolerated(0.22) benign(0.001) TCGA-RC-A6M4-01 17 30621329 30621329 A G RHBDL3 Missense_Mutation p.Y179C 0.47 tolerated(0.23) benign(0.017) TCGA-RC-A6M4-01 17 33504605 33504605 T A UNC45B Missense_Mutation p.L746Q 0.49 deleterious(0) probably_damaging(0.97) TCGA-RC-A6M4-01 17 38907463 38907463 A T KRT25 Missense_Mutation p.L262H 0.48 deleterious(0) probably_damaging(0.989) TCGA-RC-A6M4-01 17 39550414 39550414 T A KRT31 Missense_Mutation p.S369C 0.51 tolerated(1) benign(0) TCGA-RC-A6M4-01 17 42854925 42854925 C T ADAM11 Silent p.I619I 0.46 TCGA-RC-A6M4-01 17 43010040 43010040 C A KIF18B Splice_Site p.X413_splice 0.38 TCGA-RC-A6M4-01 17 45890656 45890656 T C OSBPL7 Silent p.R571R 0.43 TCGA-RC-A6M4-01 17 72519756 72519756 G A CD300LB Silent p.T172T 0.40 TCGA-RC-A6M4-01 17 73805856 73805856 C A UNK Missense_Mutation p.F40L 0.39 deleterious(0) probably_damaging(0.977) TCGA-RC-A6M4-01 18 70417483 70417483 G T NETO1 Missense_Mutation p.A452D 0.57 deleterious_low_confidence(0.04) benign(0.287) TCGA-RC-A6M4-01 18 9888198 9888198 A C TXNDC2 3'Flank 0.31 TCGA-RC-A6M4-01 19 13211833 13211833 G A LYL1 Silent p.S51S 0.25 TCGA-RC-A6M4-01 19 17716933 17716933 G T UNC13A Missense_Mutation p.A1681D 0.26 deleterious(0) probably_damaging(0.998) TCGA-RC-A6M4-01 19 18710417 18710417 G T CRLF1 Missense_Mutation p.R119S 0.41 tolerated(0.19) benign(0.006) TCGA-RC-A6M4-01 19 19136956 19136956 T A SUGP2 Silent p.G67G 0.33 TCGA-RC-A6M4-01 19 23170107 23170107 T A ZNF728 Intron 0.65 TCGA-RC-A6M4-01 19 39664257 39664257 G T PAK4 Silent p.G235G 0.60 TCGA-RC-A6M4-01 19 48734142 48734142 G C CARD8 Missense_Mutation p.L222V 0.28 tolerated(0.29) probably_damaging(0.969) TCGA-RC-A6M4-01 19 48925128 48925128 T A GRIN2D Nonsense_Mutation p.Y726* 0.31 TCGA-RC-A6M4-01 19 51169670 51169670 T C SHANK1 Silent p.P1849P 0.52 TCGA-RC-A6M4-01 19 53668959 53668959 A T ZNF665 Missense_Mutation p.Y262N 0.32 deleterious(0) probably_damaging(0.995) TCGA-RC-A6M4-01 19 5866696 5866696 T A FUT5 Silent p.A347A 0.35 TCGA-RC-A6M4-01 19 6773000 6773000 A T VAV1 Missense_Mutation p.N61I 0.40 deleterious(0) probably_damaging(0.958) TCGA-RC-A6M4-01 1 11718615 11718615 G A FBXO44 Missense_Mutation p.D140N 0.43 tolerated(0.1) benign(0.003) TCGA-RC-A6M4-01 1 118623785 118623785 A G SPAG17 Silent p.D716D 0.44 TCGA-RC-A6M4-01 1 145532113 145532113 A T ITGA10 Splice_Site p.X253_splice 0.45 TCGA-RC-A6M4-01 1 151156881 151156881 T A VPS72 Silent p.R158R 0.46 TCGA-RC-A6M4-01 1 154961247 154961247 C A FLAD1 Missense_Mutation p.P347T 0.37 deleterious(0.01) probably_damaging(0.99) TCGA-RC-A6M4-01 1 158589013 158589013 T G SPTA1 Silent p.R2177R 0.36 TCGA-RC-A6M4-01 1 160720138 160720138 C A SLAMF7 Missense_Mutation p.L232M 0.39 deleterious(0.02) probably_damaging(0.945) TCGA-RC-A6M4-01 1 17280833 17280833 G T CROCC Missense_Mutation p.S1101I 0.45 benign(0.157) TCGA-RC-A6M4-01 1 175046732 175046732 G A TNN Missense_Mutation p.A60T 0.51 tolerated(0.41) benign(0.008) TCGA-RC-A6M4-01 1 179783084 179783084 T C FAM163A Silent p.C88C 0.40 TCGA-RC-A6M4-01 1 180904469 180904469 T A KIAA1614 Missense_Mutation p.V475E 0.44 tolerated(0.07) probably_damaging(0.909) TCGA-RC-A6M4-01 1 186056637 186056637 A T HMCN1 Missense_Mutation p.T3075S 0.39 benign(0.336) TCGA-RC-A6M4-01 1 186348970 186348970 T A C1orf27 Missense_Mutation p.I18K 0.39 deleterious(0) benign(0.305) TCGA-RC-A6M4-01 1 207087190 207087190 T C FAIM3 Missense_Mutation p.E96G 0.28 deleterious(0.02) probably_damaging(0.932) TCGA-RC-A6M4-01 1 208063095 208063095 C A CD34 Intron 0.29 TCGA-RC-A6M4-01 1 211093249 211093249 T A KCNH1 Missense_Mutation p.S399C 0.30 deleterious(0) probably_damaging(0.957) TCGA-RC-A6M4-01 1 227216680 227216680 G T CDC42BPA Silent p.T1335T 0.25 TCGA-RC-A6M4-01 1 228528927 228528927 C A OBSCN Silent p.V6900V 0.25 TCGA-RC-A6M4-01 1 229644045 229644045 T C NUP133 5'UTR 0.27 TCGA-RC-A6M4-01 1 241799048 241799048 T G CHML Silent p.T7T 0.26 TCGA-RC-A6M4-01 1 247694727 247694727 A T OR2C3 3'UTR 0.35 TCGA-RC-A6M4-01 1 27240140 27240140 G T NR0B2 Missense_Mutation p.L98I 0.64 deleterious(0.01) possibly_damaging(0.558) TCGA-RC-A6M4-01 1 33235646 33235646 A T KIAA1522 Missense_Mutation p.E289V 0.37 deleterious(0) unknown(0) TCGA-RC-A6M4-01 1 35228049 35228049 G T GJB4 3'UTR 0.55 TCGA-RC-A6M4-01 1 39929343 39929343 A C MACF1 Silent p.G5187G 0.48 TCGA-RC-A6M4-01 1 41493722 41493722 A T SCMH1 3'UTR 0.45 TCGA-RC-A6M4-01 1 47110923 47110923 T C ATPAF1 Silent p.L221L 0.65 TCGA-RC-A6M4-01 1 62516654 62516654 A T INADL Missense_Mutation p.E1350V 0.47 deleterious(0.05) benign(0.072) TCGA-RC-A6M4-01 1 85096333 85096333 T A C1orf180 Silent p.S112S 0.42 TCGA-RC-A6M4-01 1 94510167 94510167 A C ABCA4 Splice_Site p.X1017_splice 0.36 TCGA-RC-A6M4-01 20 1551748 1551748 T C SIRPB1 Missense_Mutation p.R263G 0.47 tolerated(0.38) benign(0.002) TCGA-RC-A6M4-01 20 2384055 2384055 C G TGM6 Silent p.V334V 0.49 TCGA-RC-A6M4-01 20 34451299 34451299 G A PHF20 Missense_Mutation p.R262K 0.40 deleterious(0.02) probably_damaging(0.992) TCGA-RC-A6M4-01 20 35269645 35269645 T C SLA2 Intron 0.60 TCGA-RC-A6M4-01 20 43804641 43804641 T G PI3 Silent p.P73P 0.53 TCGA-RC-A6M4-01 20 56807870 56807870 C A ANKRD60 5'Flank 0.48 TCGA-RC-A6M4-01 20 60990663 60990663 T C RBBP8NL Missense_Mutation p.T200A 0.42 deleterious(0.03) benign(0.006) TCGA-RC-A6M4-01 20 8608977 8608977 A T PLCB1 Missense_Mutation p.I95F 0.49 tolerated(0.7) benign(0) TCGA-RC-A6M4-01 21 30968655 30968655 T C GRIK1-AS2 5'UTR 0.62 TCGA-RC-A6M4-01 21 37618611 37618611 C T DOPEY2 Silent p.L1445L 0.29 TCGA-RC-A6M4-01 21 46911137 46911137 A T COL18A1 Splice_Site p.X870_splice 0.41 TCGA-RC-A6M4-01 22 21369505 21369505 A T P2RX6 Silent p.P14P 0.45 TCGA-RC-A6M4-01 22 31530466 31530466 A C INPP5J 3'UTR 0.56 TCGA-RC-A6M4-01 22 44276649 44276649 C A PNPLA5 3'UTR 0.56 TCGA-RC-A6M4-01 2 105858703 105858703 G A GPR45 Missense_Mutation p.V130M 0.53 deleterious(0.01) possibly_damaging(0.483) TCGA-RC-A6M4-01 2 128870806 128870806 A T UGGT1 Missense_Mutation p.N224Y 0.38 tolerated(0.07) benign(0.304) TCGA-RC-A6M4-01 2 135260482 135260482 A G TMEM163 Missense_Mutation p.L182P 0.41 tolerated(0.25) possibly_damaging(0.742) TCGA-RC-A6M4-01 2 157186238 157186238 T A NR4A2 Missense_Mutation p.Q154L 0.44 tolerated(0.18) benign(0.005) TCGA-RC-A6M4-01 2 15736869 15736869 A T DDX1 Silent p.T48T 0.45 TCGA-RC-A6M4-01 2 169985170 169985170 T C LRP2 3'UTR 0.40 TCGA-RC-A6M4-01 2 180851443 180851443 T C CWC22 Missense_Mutation p.Y62C 0.36 tolerated(0.15) possibly_damaging(0.471) TCGA-RC-A6M4-01 2 1843065 1843065 G C MYT1L Missense_Mutation p.P977R 0.61 deleterious(0) probably_damaging(1) TCGA-RC-A6M4-01 2 186670102 186670102 G T FSIP2 Nonsense_Mutation p.E5446* 0.50 TCGA-RC-A6M4-01 2 21236253 21236253 G C APOB Missense_Mutation p.S1332C 0.36 possibly_damaging(0.671) TCGA-RC-A6M4-01 2 21255274 21255274 T C APOB Missense_Mutation p.D435G 0.40 benign(0.008) TCGA-RC-A6M4-01 2 220136440 220136440 G A TUBA4B RNA 0.46 TCGA-RC-A6M4-01 2 225652011 225652011 T A DOCK10 Missense_Mutation p.E1841V 0.40 deleterious(0) probably_damaging(0.998) TCGA-RC-A6M4-01 2 233246573 233246573 T G ALPP 3'UTR 0.47 TCGA-RC-A6M4-01 2 242542471 242542471 G A THAP4 Missense_Mutation p.T475M 0.50 deleterious(0) probably_damaging(0.996) TCGA-RC-A6M4-01 2 24881562 24881562 G T NCOA1 Missense_Mutation p.D6Y 0.46 deleterious(0) probably_damaging(0.935) TCGA-RC-A6M4-01 2 28824137 28824137 G A PLB1 Missense_Mutation p.D849N 0.47 deleterious(0.03) probably_damaging(0.999) TCGA-RC-A6M4-01 2 32706429 32706429 G C BIRC6 Missense_Mutation p.D2484H 0.50 possibly_damaging(0.75) TCGA-RC-A6M4-01 2 54482488 54482488 T A TSPYL6 Missense_Mutation p.R267S 0.53 tolerated(0.86) benign(0.065) TCGA-RC-A6M4-01 2 70165400 70165400 C T MXD1 Missense_Mutation p.A217V 0.42 tolerated_low_confidence(0.25) benign(0.001) TCGA-RC-A6M4-01 3 10370327 10370327 C T ATP2B2 3'UTR 0.45 TCGA-RC-A6M4-01 3 108405433 108405433 T A DZIP3 Splice_Site p.X1050_splice 0.27 TCGA-RC-A6M4-01 3 112190146 112190146 G T BTLA Missense_Mutation p.L154I 0.09 tolerated(0.43) benign(0.025) TCGA-RC-A6M4-01 3 121264699 121264699 T A POLQ Missense_Mutation p.K9I 0.35 deleterious_low_confidence(0) unknown(0) TCGA-RC-A6M4-01 3 121712723 121712723 T A ILDR1 Missense_Mutation p.K291N 0.54 tolerated(0.49) benign(0.004) TCGA-RC-A6M4-01 3 124826958 124826958 T C SLC12A8 Missense_Mutation p.K358E 0.29 deleterious(0) probably_damaging(0.96) TCGA-RC-A6M4-01 3 125769824 125769824 T A SLC41A3 Missense_Mutation p.N115Y 0.57 deleterious(0) probably_damaging(1) TCGA-RC-A6M4-01 3 129266304 129266304 C A H1FOO Silent p.P53P 0.23 TCGA-RC-A6M4-01 3 13612450 13612450 T G FBLN2 Missense_Mutation p.Y199D 0.37 deleterious(0.02) probably_damaging(1) TCGA-RC-A6M4-01 3 137748665 137748665 T C CLDN18 Missense_Mutation p.V177A 0.52 deleterious(0) probably_damaging(0.988) TCGA-RC-A6M4-01 3 137787109 137787109 T G DZIP1L Silent p.P572P 0.22 TCGA-RC-A6M4-01 3 183756700 183756700 C A HTR3D Missense_Mutation p.F434L 0.24 deleterious(0) possibly_damaging(0.677) TCGA-RC-A6M4-01 3 33110391 33110391 T A GLB1 Missense_Mutation p.Y106F 0.42 tolerated(0.55) benign(0.292) TCGA-RC-A6M4-01 3 36485045 36485045 C G STAC Missense_Mutation p.L101V 0.57 tolerated(0.23) benign(0.002) TCGA-RC-A6M4-01 3 37574811 37574811 G T ITGA9 Missense_Mutation p.R460S 0.51 deleterious(0) possibly_damaging(0.794) TCGA-RC-A6M4-01 3 38181897 38181897 T A MYD88 Missense_Mutation p.F174Y 0.46 tolerated(0.27) benign(0.397) TCGA-RC-A6M4-01 3 41266098 41266098 A T CTNNB1 Missense_Mutation p.D32V 0.49 deleterious(0) probably_damaging(0.988) TCGA-RC-A6M4-01 3 44612664 44612665 - A ZKSCAN7 Frame_Shift_Ins p.P690Tfs*3 0.26 TCGA-RC-A6M4-01 3 52558211 52558211 C T STAB1 Silent p.T2546T 0.56 TCGA-RC-A6M4-01 3 69221075 69221075 G A FRMD4B Silent p.N1014N 0.36 TCGA-RC-A6M4-01 3 78737868 78737868 G T ROBO1 Missense_Mutation p.T367N 0.33 tolerated(0.07) possibly_damaging(0.719) TCGA-RC-A6M4-01 4 123268771 123268771 G A KIAA1109 Silent p.Q4322Q 0.39 TCGA-RC-A6M4-01 4 13601419 13601419 T A BOD1L1 Missense_Mutation p.S2369C 0.36 possibly_damaging(0.885) TCGA-RC-A6M4-01 4 155256019 155256019 C G DCHS2 Splice_Site p.X406_splice 0.32 TCGA-RC-A6M4-01 4 185074757 185074757 C T ENPP6 Nonsense_Mutation p.W124* 0.48 TCGA-RC-A6M4-01 4 4228502 4228502 A T OTOP1 Silent p.P30P 0.71 TCGA-RC-A6M4-01 4 48490859 48490859 A T SLC10A4 Missense_Mutation p.Y406F 0.45 deleterious(0.02) benign(0.169) TCGA-RC-A6M4-01 4 70346460 70346460 C G UGT2B4 Silent p.V493V 0.51 TCGA-RC-A6M4-01 4 71659507 71659507 G A RUFY3 Missense_Mutation p.R448H 0.21 tolerated(0.08) benign(0.024) TCGA-RC-A6M4-01 5 140209357 140209357 A T PCDHA6 Missense_Mutation p.N561Y 0.46 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-RC-A6M4-01 5 140531345 140531345 T A PCDHB6 Missense_Mutation p.S503T 0.30 deleterious(0) benign(0.233) TCGA-RC-A6M4-01 5 147821927 147821927 T C FBXO38 3'UTR 0.50 TCGA-RC-A6M4-01 5 148687115 148687115 G C AFAP1L1 Missense_Mutation p.R229P 0.41 deleterious(0.01) possibly_damaging(0.551) TCGA-RC-A6M4-01 5 149314265 149314265 T C PDE6A Missense_Mutation p.D164G 0.44 tolerated(0.15) benign(0.005) TCGA-RC-A6M4-01 5 150516818 150516818 T C ANXA6 Missense_Mutation p.H128R 0.37 tolerated(1) benign(0.005) TCGA-RC-A6M4-01 5 150682785 150682785 T A SLC36A3 Intron 0.47 TCGA-RC-A6M4-01 5 150701730 150701730 T A SLC36A2 Missense_Mutation p.T353S 0.40 tolerated(0.28) benign(0.364) TCGA-RC-A6M4-01 5 172662201 172662201 T A NKX2-5 5'UTR 0.51 TCGA-RC-A6M4-01 5 179045165 179045165 C A HNRNPH1 Missense_Mutation p.R232S 0.62 tolerated(0.06) benign(0.186) TCGA-RC-A6M4-01 5 33649699 33649699 A G ADAMTS12 Missense_Mutation p.W432R 0.29 deleterious(0) probably_damaging(1) TCGA-RC-A6M4-01 5 41739504 41739504 C G OXCT1 Silent p.G503G 0.40 TCGA-RC-A6M4-01 5 55178923 55178923 A T IL31RA Missense_Mutation p.K169I 0.48 deleterious(0) possibly_damaging(0.906) TCGA-RC-A6M4-01 5 68665374 68665374 A T TAF9 Intron 0.49 TCGA-RC-A6M4-01 5 68665389 68665389 C A TAF9 Intron 0.52 TCGA-RC-A6M4-01 5 82816442 82816442 A T VCAN Missense_Mutation p.T773S 0.48 tolerated(0.2) benign(0.003) TCGA-RC-A6M4-01 5 90077196 90077196 T A GPR98 Intron 0.46 TCGA-RC-A6M4-01 6 128134158 128134158 A G THEMIS Missense_Mutation p.M543T 0.90 deleterious(0) benign(0.217) TCGA-RC-A6M4-01 6 142468439 142468439 A G VTA1 Silent p.A5A 0.81 TCGA-RC-A6M4-01 6 150005471 150005471 T A LATS1 Nonsense_Mutation p.R252* 0.86 TCGA-RC-A6M4-01 6 155774563 155774563 G A NOX3 Silent p.V105V 0.93 TCGA-RC-A6M4-01 6 18188207 18188207 A T KDM1B Intron 0.35 TCGA-RC-A6M4-01 6 27368962 27368962 C G ZNF391 Missense_Mutation p.H271Q 0.32 deleterious(0) probably_damaging(0.994) TCGA-RC-A6M4-01 6 30080321 30080321 A G TRIM31 Missense_Mutation p.S88P 0.28 tolerated(1) benign(0.001) TCGA-RC-A6M4-01 6 32170085 32170085 C A NOTCH4 Missense_Mutation p.A1175S 0.33 tolerated(0.25) possibly_damaging(0.458) TCGA-RC-A6M4-01 6 38802359 38802359 G A DNAH8 Missense_Mutation p.G1219E 0.27 probably_damaging(0.978) TCGA-RC-A6M4-01 6 4061022 4061022 G C PRPF4B 3'UTR 0.27 TCGA-RC-A6M4-01 6 43402429 43402429 G T ABCC10 Missense_Mutation p.R484L 0.28 deleterious(0.01) possibly_damaging(0.663) TCGA-RC-A6M4-01 6 44116103 44116103 A G TMEM63B Missense_Mutation p.N368D 0.18 tolerated(1) benign(0.083) TCGA-RC-A6M4-01 6 45296466 45296466 G T RUNX2 Translation_Start_Site p.M1? 0.59 deleterious_low_confidence(0) benign(0.38) TCGA-RC-A6M4-01 6 56468122 56468122 T A DST Intron 0.29 TCGA-RC-A6M4-01 6 73102430 73102430 T A RIMS1 Silent p.A1512A 0.90 TCGA-RC-A6M4-01 6 85446945 85446945 T A TBX18 Missense_Mutation p.N428Y 0.91 tolerated(0.07) probably_damaging(0.994) TCGA-RC-A6M4-01 7 117307000 117307000 C T CFTR Silent p.I1427I 0.46 TCGA-RC-A6M4-01 7 130002351 130002351 C A CPA5 Missense_Mutation p.H203N 0.62 deleterious(0.01) benign(0.395) TCGA-RC-A6M4-01 7 136700608 136700608 A - CHRM2 Frame_Shift_Del p.S334Vfs*13 0.37 TCGA-RC-A6M4-01 7 141618728 141618728 G T OR9A4 Missense_Mutation p.G18V 0.35 tolerated(0.17) probably_damaging(0.97) TCGA-RC-A6M4-01 7 17375399 17375399 G T AHR Missense_Mutation p.Q383H 0.32 tolerated(0.1) benign(0.189) TCGA-RC-A6M4-01 7 22259519 22259519 T A RAPGEF5 Missense_Mutation p.Q168L 0.52 deleterious(0.01) benign(0.118) TCGA-RC-A6M4-01 7 2987241 2987241 G A CARD11 Missense_Mutation p.A63V 0.49 deleterious(0.01) possibly_damaging(0.785) TCGA-RC-A6M4-01 7 55750419 55750419 C A RNU6-389P 5'Flank 0.61 TCGA-RC-A6M4-01 7 5645115 5645115 G A FSCN1 3'UTR 0.63 TCGA-RC-A6M4-01 7 73085576 73085576 C T VPS37D Missense_Mutation p.A209V 0.47 tolerated(0.12) probably_damaging(0.935) TCGA-RC-A6M4-01 7 73752825 73752825 G A CLIP2 Missense_Mutation p.A57T 0.43 tolerated(0.32) benign(0.001) TCGA-RC-A6M4-01 7 76982269 76982269 A C GSAP Missense_Mutation p.W495G 0.44 deleterious(0.02) probably_damaging(0.977) TCGA-RC-A6M4-01 7 91503797 91503797 T A MTERF Missense_Mutation p.E104V 0.39 tolerated(0.32) probably_damaging(0.999) TCGA-RC-A6M4-01 7 99054154 99054164 GGGGCCCCGCT - CPSF4 3'UTR 0.39 TCGA-RC-A6M4-01 8 107670089 107670089 G T OXR1 Intron 0.30 TCGA-RC-A6M4-01 8 107781754 107781754 G T ABRA Missense_Mutation p.S222Y 0.05 deleterious(0) possibly_damaging(0.665) TCGA-RC-A6M4-01 8 113529405 113529405 A T CSMD3 Silent p.T1538T 0.12 TCGA-RC-A6M4-01 8 133192469 133192469 G T KCNQ3 Missense_Mutation p.L238M 0.17 deleterious(0) probably_damaging(1) TCGA-RC-A6M4-01 8 142190927 142190927 C T DENND3 Missense_Mutation p.A893V 0.23 tolerated(0.06) benign(0.406) TCGA-RC-A6M4-01 8 144408432 144408432 T C TOP1MT Missense_Mutation p.K148R 0.05 tolerated(0.16) benign(0.072) TCGA-RC-A6M4-01 8 27315905 27315905 A T PTK2B Missense_Mutation p.E970V 0.93 tolerated(0.07) possibly_damaging(0.697) TCGA-RC-A6M4-01 8 70541750 70541750 A T SULF1 Missense_Mutation p.Q707L 0.24 deleterious(0.03) benign(0.005) TCGA-RC-A6M4-01 8 73939235 73939235 A T TERF1 Missense_Mutation p.S279C 0.23 tolerated(0.07) benign(0.325) TCGA-RC-A6M4-01 8 79590890 79590890 A G ZC2HC1A Silent p.P62P 0.42 TCGA-RC-A6M4-01 8 88249211 88249211 T C CNBD1 Silent p.Y214Y 0.34 TCGA-RC-A6M4-01 8 94767137 94767137 G A TMEM67 5'UTR 0.17 TCGA-RC-A6M4-01 9 101052751 101052751 G A GABBR2 3'UTR 0.54 TCGA-RC-A6M4-01 9 102784454 102784454 C T ERP44 Missense_Mutation p.R114H 0.22 deleterious(0) possibly_damaging(0.848) TCGA-RC-A6M4-01 9 121929740 121929740 G A BRINP1 Silent p.G636G 0.52 TCGA-RC-A6M4-01 9 121930107 121930107 G T BRINP1 Missense_Mutation p.T514N 0.38 tolerated(0.11) probably_damaging(0.95) TCGA-RC-A6M4-01 9 130929424 130929424 G T CIZ1 Missense_Mutation p.S772Y 0.48 deleterious(0) possibly_damaging(0.862) TCGA-RC-A6M4-01 9 19050112 19050112 C T RRAGA Missense_Mutation p.S152F 0.33 deleterious(0.02) possibly_damaging(0.516) TCGA-RC-A6M4-01 9 21350829 21350829 A T IFNA6 Missense_Mutation p.C20S 0.34 tolerated(0.18) benign(0.057) TCGA-RC-A6M4-01 9 77435310 77435310 G T TRPM6 Silent p.I348I 0.34 TCGA-RC-A6M4-01 9 84547809 84547809 C T RP11-383M4.6 Intron 0.34 TCGA-RC-A6M4-01 X 100104832 100104832 G C NOX1 Missense_Mutation p.P409A 0.56 deleterious(0) probably_damaging(1) TCGA-RC-A6M4-01 X 103220363 103220363 G T TMSB15B 3'UTR 0.62 TCGA-RC-A6M4-01 X 105011034 105011034 A T IL1RAPL2 Nonsense_Mutation p.R481* 0.48 TCGA-RC-A6M4-01 X 107423750 107423750 A T COL4A6 Nonsense_Mutation p.L710* 0.44 TCGA-RC-A6M4-01 X 109693862 109693862 A G RGAG1 Missense_Mutation p.H6R 0.44 tolerated_low_confidence(0.08) benign(0.014) TCGA-RC-A6M4-01 X 119005660 119005660 C A RNF113A 5'UTR 0.34 TCGA-RC-A6M4-01 X 128927908 128927908 A G SASH3 3'UTR 0.50 TCGA-RC-A6M4-01 X 149013280 149013280 T A MAGEA8 Silent p.T78T 0.43 TCGA-RC-A6M4-01 X 152110314 152110314 C A ZNF185 Intron 0.43 TCGA-RC-A6M4-01 X 17745541 17745541 T C NHS Silent p.R1084R 0.51 TCGA-RC-A6M4-01 X 44109644 44109644 G T EFHC2 Silent p.T218T 0.37 TCGA-RC-A6M4-01 X 54783459 54783459 G A ITIH6 Silent p.S1016S 0.44 TCGA-RC-A6M4-01 X 80370663 80370663 C A HMGN5 Nonsense_Mutation p.G112* 0.48 TCGA-RC-A6M4-01 X 82764109 82764109 G T POU3F4 Silent p.A259A 0.42 TCGA-RC-A6M4-01 X 84301522 84301522 A G APOOL Missense_Mutation p.E29G 0.49 deleterious(0) possibly_damaging(0.861) TCGA-RC-A6M5-01 10 129903267 129903267 C - MKI67 Frame_Shift_Del p.M2279Ifs*35 0.10 TCGA-RC-A6M5-01 10 17875789 17875789 C T MRC1L1 Silent p.N251N 0.11 TCGA-RC-A6M5-01 10 18122743 18122743 C T MRC1 Silent p.N251N 0.09 TCGA-RC-A6M5-01 11 65726395 65726395 T C SART1 5'Flank 0.05 TCGA-RC-A6M5-01 13 108518523 108518523 C G FAM155A Missense_Mutation p.G141A 0.23 tolerated_low_confidence(0.74) probably_damaging(0.998) TCGA-RC-A6M5-01 13 23903686 23903686 T C SACS 3'UTR 0.15 TCGA-RC-A6M5-01 15 101608980 101608980 G A LRRK1 Missense_Mutation p.R1992K 0.07 tolerated_low_confidence(0.2) benign(0.003) TCGA-RC-A6M5-01 15 43021296 43021296 T C CDAN1 Missense_Mutation p.N857S 0.07 deleterious(0) possibly_damaging(0.632) TCGA-RC-A6M5-01 16 15815347 15815347 G T MYH11 Silent p.R1511R 0.17 TCGA-RC-A6M5-01 16 51173735 51173735 C T SALL1 Missense_Mutation p.D800N 0.07 deleterious(0) benign(0.373) TCGA-RC-A6M5-01 16 90015867 90015867 T C DEF8 5'UTR 0.12 TCGA-RC-A6M5-01 19 12059950 12059950 T C ZNF700 Missense_Mutation p.F371L 0.12 tolerated(0.07) possibly_damaging(0.715) TCGA-RC-A6M5-01 19 1487019 1487019 C T PCSK4 Missense_Mutation p.G301S 0.05 deleterious(0) probably_damaging(1) TCGA-RC-A6M5-01 19 3806099 3806099 G A ZFR2 Missense_Mutation p.R890W 0.11 deleterious(0) probably_damaging(1) TCGA-RC-A6M5-01 1 155990726 155990726 G A SSR2 5'UTR 0.10 TCGA-RC-A6M5-01 20 30194293 30194293 A T ID1 3'UTR 0.07 TCGA-RC-A6M5-01 22 25301103 25301103 G A SGSM1 Missense_Mutation p.V978I 0.03 deleterious(0.01) benign(0.264) TCGA-RC-A6M5-01 22 45580526 45580526 A G NUP50 Missense_Mutation p.K466R 0.05 tolerated(0.12) benign(0.079) TCGA-RC-A6M5-01 2 145146295 145146295 G C ZEB2 3'UTR 0.22 TCGA-RC-A6M5-01 2 32768519 32768519 C T BIRC6 Missense_Mutation p.P4168L 0.13 probably_damaging(0.999) TCGA-RC-A6M5-01 2 61607465 61607465 G A USP34 Nonsense_Mutation p.R285* 0.13 TCGA-RC-A6M5-01 3 120122185 120122185 C G FSTL1 Missense_Mutation p.A200P 0.08 deleterious(0.03) possibly_damaging(0.487) TCGA-RC-A6M5-01 3 30903143 30903143 T A GADL1 Missense_Mutation p.E51V 0.08 deleterious(0.01) benign(0.104) TCGA-RC-A6M5-01 4 100052694 100052694 C G ADH4 Silent p.V268V 0.10 TCGA-RC-A6M5-01 4 94032016 94032016 G A GRID2 Missense_Mutation p.R216K 0.08 tolerated(0.66) benign(0.04) TCGA-RC-A6M5-01 5 133942601 133942601 A C SAR1B 3'UTR 0.08 TCGA-RC-A6M5-01 6 159646689 159646689 G A FNDC1 Missense_Mutation p.R336H 0.24 deleterious(0) unknown(0) TCGA-RC-A6M5-01 7 107399297 107399297 A G CBLL1 Missense_Mutation p.I384V 0.23 tolerated(0.23) benign(0.029) TCGA-RC-A6M5-01 7 26224602 26224602 T C NFE2L3 Silent p.N428N 0.15 TCGA-RC-A6M5-01 7 6660769 6660769 C A ZNF853 Missense_Mutation p.S49R 0.13 deleterious_low_confidence(0) unknown(0) TCGA-RC-A6M5-01 8 121238908 121238908 C T COL14A1 Missense_Mutation p.T636M 0.09 deleterious(0) benign(0.027) TCGA-RC-A6M5-01 8 12600698 12600698 A C LONRF1 Missense_Mutation p.L272R 0.10 deleterious(0.03) possibly_damaging(0.606) TCGA-RC-A6M5-01 8 13948007 13948007 G T SGCZ Missense_Mutation p.P295Q 0.08 tolerated(0.54) probably_damaging(0.999) TCGA-RC-A6M5-01 8 2017578 2017578 A T MYOM2 Missense_Mutation p.D252V 0.11 tolerated(0.06) benign(0.258) TCGA-RC-A6M5-01 9 4697851 4697851 G A CDC37L1 Missense_Mutation p.C240Y 0.05 deleterious(0.01) probably_damaging(1) TCGA-RC-A6M6-01 10 103917282 103917282 T G NOLC1 Missense_Mutation p.D137E 0.40 tolerated_low_confidence(1) benign(0) TCGA-RC-A6M6-01 10 105173039 105173039 C A PDCD11 Missense_Mutation p.A382D 0.28 deleterious(0) probably_damaging(0.939) TCGA-RC-A6M6-01 10 105944803 105944803 A T WDR96 Missense_Mutation p.D704E 0.18 tolerated(0.52) benign(0.013) TCGA-RC-A6M6-01 10 118360697 118360697 G T PNLIPRP1 Missense_Mutation p.E349D 0.38 tolerated(1) benign(0) TCGA-RC-A6M6-01 10 123274695 123274695 T C FGFR2 Missense_Mutation p.D409G 0.20 tolerated(0.2) probably_damaging(0.998) TCGA-RC-A6M6-01 10 124361447 124361447 T C DMBT1 Missense_Mutation p.C1160R 0.32 deleterious(0) probably_damaging(0.999) TCGA-RC-A6M6-01 10 133787338 133787338 A T BNIP3 Missense_Mutation p.H52Q 0.18 deleterious(0.01) possibly_damaging(0.609) TCGA-RC-A6M6-01 10 15688879 15688879 T G ITGA8 Silent p.A391A 0.33 TCGA-RC-A6M6-01 10 19787476 19787476 G T MALRD1 Missense_Mutation p.A1120S 0.42 tolerated(0.43) benign(0.013) TCGA-RC-A6M6-01 10 58117894 58117894 G C ZWINT 3'UTR 0.36 TCGA-RC-A6M6-01 10 94664 94664 A T TUBB8 Silent p.G56G 0.27 TCGA-RC-A6M6-01 11 134252717 134252717 T G B3GAT1 Missense_Mutation p.S269R 0.45 deleterious(0.04) possibly_damaging(0.742) TCGA-RC-A6M6-01 11 17544442 17544442 C A USH1C Missense_Mutation p.R303L 0.41 deleterious(0) possibly_damaging(0.758) TCGA-RC-A6M6-01 11 32414292 32414292 G C WT1 Missense_Mutation p.P420R 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-RC-A6M6-01 11 5410935 5410935 A T OR51M1 Missense_Mutation p.S103C 0.45 deleterious(0) benign(0.372) TCGA-RC-A6M6-01 11 55038042 55038042 C T TRIM48 3'UTR 0.42 TCGA-RC-A6M6-01 11 55579638 55579638 G T OR5L1 Missense_Mutation p.E232D 0.39 tolerated(0.06) benign(0.181) TCGA-RC-A6M6-01 11 56000068 56000068 A G OR5T2 Silent p.H198H 0.42 TCGA-RC-A6M6-01 11 59861471 59861471 T A MS4A2 Missense_Mutation p.L191Q 0.36 deleterious(0) probably_damaging(1) TCGA-RC-A6M6-01 11 59861472 59861472 G T MS4A2 Silent p.L191L 0.36 TCGA-RC-A6M6-01 11 59861474 59861474 G T MS4A2 Missense_Mutation p.G192V 0.36 deleterious(0.03) probably_damaging(0.968) TCGA-RC-A6M6-01 11 6261787 6261787 G A CNGA4 Missense_Mutation p.V255I 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-RC-A6M6-01 11 76925722 76925722 G T MYO7A Missense_Mutation p.G2210V 0.45 deleterious(0.01) benign(0.1) TCGA-RC-A6M6-01 11 82895887 82895887 C T PCF11 Missense_Mutation p.A1540V 0.34 tolerated(0.39) benign(0.007) TCGA-RC-A6M6-01 12 105629887 105629887 G A APPL2 5'Flank 0.33 TCGA-RC-A6M6-01 12 106532406 106532406 G T NUAK1 Missense_Mutation p.A9E 0.73 tolerated_low_confidence(1) benign(0.001) TCGA-RC-A6M6-01 12 111884917 111884929 CTTCTCCAGCAGG - SH2B3 Splice_Site p.X309_splice 0.31 TCGA-RC-A6M6-01 12 130929724 130929724 A T RIMBP2 Missense_Mutation p.D207E 0.76 deleterious(0) probably_damaging(1) TCGA-RC-A6M6-01 12 13366481 13366481 C A EMP1 Nonsense_Mutation p.C49* 0.28 TCGA-RC-A6M6-01 12 21609022 21609022 C A PYROXD1 Missense_Mutation p.T248K 0.35 tolerated(0.43) benign(0.015) TCGA-RC-A6M6-01 12 335639 335639 A C SLC6A13 Missense_Mutation p.F326C 0.35 deleterious(0) probably_damaging(0.969) TCGA-RC-A6M6-01 12 44165082 44165082 G T IRAK4 Missense_Mutation p.W74L 0.39 deleterious(0) probably_damaging(1) TCGA-RC-A6M6-01 12 44165083 44165083 G T IRAK4 Missense_Mutation p.W74C 0.39 deleterious(0) probably_damaging(1) TCGA-RC-A6M6-01 12 5023383 5023383 T G KCNA1 3'UTR 0.45 TCGA-RC-A6M6-01 12 52960639 52960639 T C KRT74 3'UTR 0.51 TCGA-RC-A6M6-01 12 53433732 53433732 A G EIF4B Intron 0.25 TCGA-RC-A6M6-01 12 57640644 57640644 G A STAC3 Silent p.R182R 0.32 TCGA-RC-A6M6-01 12 58166537 58166537 T A METTL21B Silent p.S10S 0.36 TCGA-RC-A6M6-01 12 71054875 71054875 T G PTPRR Missense_Mutation p.Q537H 0.30 tolerated(0.74) benign(0.003) TCGA-RC-A6M6-01 12 85285987 85285987 G T SLC6A15 5'UTR 0.35 TCGA-RC-A6M6-01 12 99640465 99640465 G C ANKS1B Missense_Mutation p.P645R 0.40 deleterious(0.02) benign(0.035) TCGA-RC-A6M6-01 13 20657109 20657109 A G ZMYM2 Missense_Mutation p.T1253A 0.43 tolerated(0.17) probably_damaging(0.997) TCGA-RC-A6M6-01 13 26043153 26043153 G T ATP8A2 Missense_Mutation p.D39Y 0.29 deleterious(0) probably_damaging(0.914) TCGA-RC-A6M6-01 13 37679220 37679220 C G CSNK1A1L Silent p.L58L 0.37 TCGA-RC-A6M6-01 13 78477336 78477336 C G EDNRB Silent p.L342L 0.29 TCGA-RC-A6M6-01 14 105270476 105270476 C T ZBTB42 3'UTR 0.41 TCGA-RC-A6M6-01 14 19553734 19553734 C A POTEG Missense_Mutation p.F106L 0.16 tolerated_low_confidence(0.09) benign(0.005) TCGA-RC-A6M6-01 14 20215690 20215690 A C OR4Q3 Missense_Mutation p.Y35S 0.21 deleterious(0) possibly_damaging(0.796) TCGA-RC-A6M6-01 14 20216358 20216358 A T OR4Q3 Missense_Mutation p.I258F 0.12 deleterious(0.02) possibly_damaging(0.857) TCGA-RC-A6M6-01 14 20925548 20925548 T A APEX1 Missense_Mutation p.W280R 0.33 deleterious(0) probably_damaging(1) TCGA-RC-A6M6-01 14 21955859 21955859 G A TOX4 Intron 0.44 TCGA-RC-A6M6-01 14 24807239 24807239 G T RIPK3 Silent p.T224T 0.47 TCGA-RC-A6M6-01 14 50576389 50576389 A G VCPKMT 3'UTR 0.49 TCGA-RC-A6M6-01 14 59961929 59961929 G T JKAMP Missense_Mutation p.A149S 0.37 deleterious(0) probably_damaging(0.992) TCGA-RC-A6M6-01 14 99640967 99640967 G T BCL11B Missense_Mutation p.P736T 0.42 deleterious(0) benign(0.023) TCGA-RC-A6M6-01 15 48063978 48063978 A G SEMA6D Missense_Mutation p.Y1073C 0.31 deleterious(0) probably_damaging(0.999) TCGA-RC-A6M6-01 15 74560789 74560789 T C CCDC33 Missense_Mutation p.M179T 0.17 tolerated(1) benign(0) TCGA-RC-A6M6-01 15 74836589 74836589 T C ARID3B Silent p.D104D 0.18 TCGA-RC-A6M6-01 15 75705361 75705361 G A SIN3A Missense_Mutation p.R167C 0.33 deleterious(0) probably_damaging(0.999) TCGA-RC-A6M6-01 15 94945947 94945947 G T MCTP2 Intron 0.38 TCGA-RC-A6M6-01 15 96880903 96880903 T C NR2F2 3'UTR 0.52 TCGA-RC-A6M6-01 16 11056338 11056338 T G CLEC16A Missense_Mutation p.V79G 0.39 tolerated(0.18) benign(0.029) TCGA-RC-A6M6-01 16 1537527 1537527 G T PTX4 Missense_Mutation p.P191T 0.62 tolerated(0.24) possibly_damaging(0.804) TCGA-RC-A6M6-01 16 19234475 19234475 A T SYT17 Missense_Mutation p.S354C 0.38 tolerated(0.23) benign(0.005) TCGA-RC-A6M6-01 16 20476838 20476838 G A ACSM2A Splice_Site p.X60_splice 0.38 TCGA-RC-A6M6-01 16 23703609 23703609 T C ERN2 Missense_Mutation p.Y763C 0.42 deleterious(0) probably_damaging(1) TCGA-RC-A6M6-01 16 30095000 30095000 T C PPP4C Missense_Mutation p.S168P 0.05 deleterious(0) probably_damaging(1) TCGA-RC-A6M6-01 16 57604440 57604440 A T GPR114 Missense_Mutation p.M401L 0.41 tolerated(0.21) benign(0.016) TCGA-RC-A6M6-01 16 625870 625870 G A PIGQ Missense_Mutation p.G241R 0.76 tolerated(0.38) benign(0.007) TCGA-RC-A6M6-01 16 70778459 70778459 C A VAC14 Silent p.V465V 0.26 TCGA-RC-A6M6-01 16 72108240 72108240 G - HPR Frame_Shift_Del p.R50Pfs*20 0.23 TCGA-RC-A6M6-01 16 84514214 84514214 G A TLDC1 Missense_Mutation p.P393L 0.47 deleterious(0) probably_damaging(0.918) TCGA-RC-A6M6-01 16 85696964 85696964 G A GSE1 Silent p.L796L 0.42 TCGA-RC-A6M6-01 17 10307807 10307807 A T MYH8 Missense_Mutation p.L843H 0.66 deleterious(0) probably_damaging(1) TCGA-RC-A6M6-01 17 10411951 10411951 C T MYH1 Missense_Mutation p.M542I 0.71 deleterious(0.03) possibly_damaging(0.498) TCGA-RC-A6M6-01 17 16692291 16692291 T G CCDC144A Intron 0.35 TCGA-RC-A6M6-01 17 30648368 30648368 G T RHBDL3 3'UTR 0.42 TCGA-RC-A6M6-01 17 35298050 35298050 C T LHX1 Missense_Mutation p.R181W 0.35 deleterious(0.04) benign(0.381) TCGA-RC-A6M6-01 17 35545226 35545226 C T ACACA Silent p.R1589R 0.40 TCGA-RC-A6M6-01 17 39723992 39723992 C A KRT9 Nonsense_Mutation p.G469* 0.57 TCGA-RC-A6M6-01 17 39881005 39881005 T G HAP1 Missense_Mutation p.H603P 0.29 tolerated_low_confidence(0.15) benign(0.012) TCGA-RC-A6M6-01 17 40820119 40820120 - GG PLEKHH3 3'UTR 0.47 TCGA-RC-A6M6-01 17 7254302 7254302 G A ACAP1 Silent p.A702A 0.63 TCGA-RC-A6M6-01 17 74014610 74014611 - CCCT EVPL Frame_Shift_Ins p.P453Gfs*22 0.26 TCGA-RC-A6M6-01 17 7577064 7577064 T A TP53 Nonsense_Mutation p.K292* 0.53 TCGA-RC-A6M6-01 17 76120809 76120809 C T TMC6 Silent p.P229P 0.30 TCGA-RC-A6M6-01 17 76490821 76490821 C G DNAH17 Missense_Mutation p.A2028P 0.45 benign(0.005) TCGA-RC-A6M6-01 17 9846500 9846500 C A GAS7 Silent p.L223L 0.69 TCGA-RC-A6M6-01 18 12454401 12454401 C T SPIRE1 Missense_Mutation p.E574K 0.37 deleterious(0) probably_damaging(0.998) TCGA-RC-A6M6-01 18 21523852 21523852 C A LAMA3 Missense_Mutation p.R3043S 0.41 possibly_damaging(0.695) TCGA-RC-A6M6-01 18 3879551 3879551 G A DLGAP1 Missense_Mutation p.A173V 0.39 tolerated(0.13) benign(0.014) TCGA-RC-A6M6-01 18 67802444 67802444 T C RTTN Missense_Mutation p.D954G 0.22 deleterious(0) probably_damaging(1) TCGA-RC-A6M6-01 19 1051046 1051046 T A ABCA7 Missense_Mutation p.F893L 0.57 deleterious(0) probably_damaging(0.999) TCGA-RC-A6M6-01 19 10610444 10610444 G A KEAP1 Missense_Mutation p.P89L 0.78 tolerated(0.05) benign(0.056) TCGA-RC-A6M6-01 19 1468353 1468354 - AGT APC2 Nonsense_Mutation p.E1685_W1686ins* 0.77 TCGA-RC-A6M6-01 19 17001135 17001135 G T F2RL3 Silent p.V287V 0.58 TCGA-RC-A6M6-01 19 22574550 22574550 C G ZNF98 Missense_Mutation p.G496A 0.25 deleterious(0) benign(0.051) TCGA-RC-A6M6-01 19 3783884 3783884 G A MATK Silent p.R171R 0.65 TCGA-RC-A6M6-01 19 42301829 42301829 A T CEACAM3 Missense_Mutation p.I125L 0.61 tolerated(0.12) possibly_damaging(0.858) TCGA-RC-A6M6-01 19 51021453 51021453 G A LRRC4B Missense_Mutation p.P506L 0.92 tolerated_low_confidence(0.13) benign(0.026) TCGA-RC-A6M6-01 19 52376841 52376841 T A ZNF577 Missense_Mutation p.R134S 0.62 tolerated(0.4) benign(0.005) TCGA-RC-A6M6-01 19 52376925 52376925 T A ZNF577 Missense_Mutation p.K106N 0.64 tolerated(0.11) benign(0.19) TCGA-RC-A6M6-01 19 54598293 54598293 G T OSCAR 3'UTR 0.21 TCGA-RC-A6M6-01 19 54626868 54626868 T A PRPF31 Missense_Mutation p.N152K 0.54 tolerated(0.2) benign(0.112) TCGA-RC-A6M6-01 19 56895202 56895202 A T ZNF582 3'UTR 0.26 TCGA-RC-A6M6-01 19 56952664 56952664 C A ZNF667 Missense_Mutation p.G567V 0.56 tolerated(0.12) probably_damaging(0.999) TCGA-RC-A6M6-01 19 6678293 6678293 C - C3 Frame_Shift_Del p.D1574Mfs*21 0.35 TCGA-RC-A6M6-01 19 687104 687104 G A PRSS57 Missense_Mutation p.R156W 0.63 tolerated(0.16) benign(0.062) TCGA-RC-A6M6-01 1 10408742 10408742 T A KIF1B Missense_Mutation p.H1254Q 0.29 deleterious(0.01) probably_damaging(0.983) TCGA-RC-A6M6-01 1 150808753 150808753 C G ARNT Intron 0.33 TCGA-RC-A6M6-01 1 153653014 153653014 C T NPR1 Silent p.T253T 0.84 TCGA-RC-A6M6-01 1 15788106 15788106 G T CELA2A Silent p.G60G 0.33 TCGA-RC-A6M6-01 1 158669510 158669510 T A OR6K2 Silent p.I311I 0.32 TCGA-RC-A6M6-01 1 158669512 158669512 T A OR6K2 Missense_Mutation p.I311L 0.33 tolerated(0.27) benign(0.001) TCGA-RC-A6M6-01 1 158817562 158817562 T C MNDA Silent p.N344N 0.85 TCGA-RC-A6M6-01 1 167096118 167096118 G A DUSP27 Missense_Mutation p.V584I 0.68 tolerated(0.21) benign(0.008) TCGA-RC-A6M6-01 1 167666934 167666934 G T RCSD1 Missense_Mutation p.G358V 0.93 deleterious(0.02) benign(0.204) TCGA-RC-A6M6-01 1 177030375 177030375 G T ASTN1 Missense_Mutation p.P104T 0.79 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-RC-A6M6-01 1 205628667 205628667 G T SLC45A3 Missense_Mutation p.L453M 0.81 tolerated(0.22) benign(0.192) TCGA-RC-A6M6-01 1 245530263 245530263 C A KIF26B Missense_Mutation p.A198D 0.43 deleterious(0) unknown(0) TCGA-RC-A6M6-01 1 247201663 247201663 C T ZNF670 Silent p.Q86Q 0.88 TCGA-RC-A6M6-01 1 247588229 247588229 A G NLRP3 Missense_Mutation p.Q495R 0.68 tolerated(0.1) benign(0.009) TCGA-RC-A6M6-01 1 247902164 247902164 C A OR14K1 Missense_Mutation p.S83Y 0.81 deleterious(0.02) benign(0.256) TCGA-RC-A6M6-01 1 247978654 247978654 G T OR14A16 Missense_Mutation p.H126Q 0.77 tolerated(0.44) benign(0.271) TCGA-RC-A6M6-01 1 248085221 248085221 G T OR2T8 Missense_Mutation p.R301M 0.75 deleterious(0.01) benign(0.04) TCGA-RC-A6M6-01 1 35563033 35563033 T A ZMYM1 Silent p.I95I 0.39 TCGA-RC-A6M6-01 1 36292423 36292423 G T AGO4 Missense_Mutation p.A279S 0.56 tolerated(0.08) possibly_damaging(0.497) TCGA-RC-A6M6-01 1 45793225 45793225 C T HPDL Silent p.R135R 0.39 TCGA-RC-A6M6-01 1 45966041 45966041 G T MMACHC Nonsense_Mutation p.E13* 0.40 TCGA-RC-A6M6-01 1 6642352 6642352 C T ZBTB48 Missense_Mutation p.H309Y 0.43 deleterious(0) possibly_damaging(0.735) TCGA-RC-A6M6-01 20 13269286 13269286 G A ISM1 Missense_Mutation p.C248Y 0.40 deleterious(0) probably_damaging(1) TCGA-RC-A6M6-01 20 50071174 50071174 C T NFATC2 Missense_Mutation p.S587N 0.58 deleterious(0.03) possibly_damaging(0.51) TCGA-RC-A6M6-01 21 45175644 45175644 A T PDXK Missense_Mutation p.K275N 0.54 tolerated(0.15) benign(0.005) TCGA-RC-A6M6-01 21 47856895 47856895 A T PCNT Silent p.T3000T 0.45 TCGA-RC-A6M6-01 22 20458090 20458090 G T RIMBP3 Missense_Mutation p.T1071N 0.24 tolerated(0.24) possibly_damaging(0.738) TCGA-RC-A6M6-01 22 24096504 24096504 G A VPREB3 Missense_Mutation p.S16L 0.31 deleterious(0) benign(0.097) TCGA-RC-A6M6-01 22 32112941 32112941 C T PRR14L Missense_Mutation p.G295E 0.22 tolerated(0.13) benign(0.017) TCGA-RC-A6M6-01 22 37334154 37334154 G T CSF2RB Missense_Mutation p.E768D 0.44 tolerated(0.24) benign(0.049) TCGA-RC-A6M6-01 22 37964987 37964987 G C CDC42EP1 3'UTR 0.30 TCGA-RC-A6M6-01 22 39125539 39125539 G T GTPBP1 Missense_Mutation p.G597C 0.26 deleterious(0.01) possibly_damaging(0.524) TCGA-RC-A6M6-01 22 50656529 50656539 TTCTCCGTGAG - TUBGCP6 Frame_Shift_Del p.L1726Gfs*101 0.41 TCGA-RC-A6M6-01 22 50696359 50696359 C G MAPK12 Intron 0.22 TCGA-RC-A6M6-01 2 103121886 103121912 TCATCTGCTTCACCCTGGCCTTCTGCC - SLC9A4 Nonsense_Mutation p.F385_Q394delins* 0.24 TCGA-RC-A6M6-01 2 128038082 128038082 C A ERCC3 Nonsense_Mutation p.E490* 0.36 TCGA-RC-A6M6-01 2 135744289 135744289 T C MAP3K19 Missense_Mutation p.Q718R 0.40 deleterious(0.01) benign(0.06) TCGA-RC-A6M6-01 2 148674983 148674983 A G ACVR2A Silent p.A268A 0.26 TCGA-RC-A6M6-01 2 157439524 157439524 G A GPD2 3'UTR 0.35 TCGA-RC-A6M6-01 2 158283867 158283867 A - CYTIP Frame_Shift_Del p.L181* 0.30 TCGA-RC-A6M6-01 2 168105997 168105997 C - XIRP2 Frame_Shift_Del p.Q2700Kfs*19 0.25 TCGA-RC-A6M6-01 2 168110643 168110643 C A XIRP2 3'UTR 0.34 TCGA-RC-A6M6-01 2 168115877 168115877 A G XIRP2 3'UTR 0.28 TCGA-RC-A6M6-01 2 179472259 179472259 A T TTN Missense_Mutation p.V17719E 0.34 TCGA-RC-A6M6-01 2 179501228 179501228 C A TTN Missense_Mutation p.K13742N 0.37 TCGA-RC-A6M6-01 2 196771386 196771387 - A DNAH7 Frame_Shift_Ins p.K1445Efs*13 0.27 TCGA-RC-A6M6-01 2 20202976 20202976 G A MATN3 Missense_Mutation p.H288Y 0.44 tolerated(1) possibly_damaging(0.476) TCGA-RC-A6M6-01 2 211179883 211179883 A T MYL1 5'UTR 0.48 TCGA-RC-A6M6-01 2 219269248 219269248 G A CTDSP1 3'UTR 0.46 TCGA-RC-A6M6-01 2 220326629 220326631 CCC - SPEG In_Frame_Del p.P823del 0.42 TCGA-RC-A6M6-01 2 220348586 220348586 G T SPEG Missense_Mutation p.G2134V 0.44 possibly_damaging(0.806) TCGA-RC-A6M6-01 2 220354472 220354472 C A SPEG Missense_Mutation p.P2911Q 0.41 probably_damaging(0.996) TCGA-RC-A6M6-01 2 220500505 220500505 C T SLC4A3 Missense_Mutation p.H722Y 0.48 tolerated(0.63) benign(0.001) TCGA-RC-A6M6-01 2 237032735 237032735 A G AGAP1 Missense_Mutation p.N848S 0.22 tolerated(0.34) benign(0.004) TCGA-RC-A6M6-01 2 240056268 240056268 G A HDAC4 Silent p.S350S 0.22 TCGA-RC-A6M6-01 2 242793440 242793440 G A PDCD1 Missense_Mutation p.P213S 0.44 tolerated(0.12) benign(0.01) TCGA-RC-A6M6-01 2 25351059 25351060 - G EFR3B Frame_Shift_Ins p.M165Sfs*17 0.26 TCGA-RC-A6M6-01 2 29297116 29297116 T C C2orf71 Silent p.T4T 0.36 TCGA-RC-A6M6-01 2 44162019 44162019 T A LRPPRC Splice_Site p.X835_splice 0.42 TCGA-RC-A6M6-01 2 45879477 45879477 G T PRKCE Nonsense_Mutation p.E80* 0.48 TCGA-RC-A6M6-01 2 99013614 99013614 C A CNGA3 Missense_Mutation p.R661S 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-RC-A6M6-01 2 99439712 99439712 C - KIAA1211L Frame_Shift_Del p.A342Pfs*157 0.58 TCGA-RC-A6M6-01 3 113724658 113724658 G A KIAA1407 Missense_Mutation p.T522I 0.35 deleterious(0.04) possibly_damaging(0.578) TCGA-RC-A6M6-01 3 127379537 127379537 T A PODXL2 Missense_Mutation p.H222Q 0.29 tolerated(0.56) benign(0.007) TCGA-RC-A6M6-01 3 158519925 158519925 C G MFSD1 Missense_Mutation p.P44R 0.34 tolerated_low_confidence(0.92) benign(0) TCGA-RC-A6M6-01 3 164908256 164908256 G A SLITRK3 Silent p.F121F 0.41 TCGA-RC-A6M6-01 3 185318578 185318578 T - SENP2 Frame_Shift_Del p.S128Rfs*8 0.27 TCGA-RC-A6M6-01 3 39228092 39228092 G A XIRP1 Missense_Mutation p.P949S 0.74 deleterious(0.02) probably_damaging(0.991) TCGA-RC-A6M6-01 3 447470 447470 C A CHL1 3'UTR 0.72 TCGA-RC-A6M6-01 3 49690047 49690048 - AGCAGC BSN In_Frame_Ins p.Q1021_Q1022dup 0.41 TCGA-RC-A6M6-01 3 52553354 52553354 C A STAB1 Missense_Mutation p.F1703L 0.66 deleterious(0.05) possibly_damaging(0.771) TCGA-RC-A6M6-01 3 98251158 98251158 C A GPR15 Missense_Mutation p.A94E 0.36 tolerated(0.14) possibly_damaging(0.762) TCGA-RC-A6M6-01 4 123302161 123302161 C A ADAD1 Missense_Mutation p.P63T 0.27 tolerated(0.09) benign(0.21) TCGA-RC-A6M6-01 4 126367528 126367528 G A FAT4 Missense_Mutation p.R2425K 0.42 probably_damaging(0.997) TCGA-RC-A6M6-01 4 146032129 146032129 A - ABCE1 Frame_Shift_Del p.H208Pfs*2 0.27 TCGA-RC-A6M6-01 4 15613952 15613952 C A FBXL5 Missense_Mutation p.D646Y 0.43 deleterious(0.01) possibly_damaging(0.883) TCGA-RC-A6M6-01 4 164394657 164394657 C T TKTL2 Missense_Mutation p.G77E 0.35 deleterious(0) probably_damaging(0.969) TCGA-RC-A6M6-01 4 169825044 169825044 C A PALLD Missense_Mutation p.A870D 0.44 deleterious(0) probably_damaging(0.999) TCGA-RC-A6M6-01 4 170981932 170981932 C A AADAT 3'UTR 0.33 TCGA-RC-A6M6-01 4 170991792 170991792 T C AADAT Silent p.K222K 0.43 TCGA-RC-A6M6-01 4 40892391 40892391 C T APBB2 Missense_Mutation p.D507N 0.42 deleterious(0.01) possibly_damaging(0.784) TCGA-RC-A6M6-01 4 42400220 42400220 C T SHISA3 Silent p.D49D 0.28 TCGA-RC-A6M6-01 4 55133851 55133851 C T PDGFRA Missense_Mutation p.T355I 0.40 deleterious(0.03) possibly_damaging(0.516) TCGA-RC-A6M6-01 5 131007517 131007517 A T FNIP1 Missense_Mutation p.C874S 0.42 tolerated(0.25) benign(0.007) TCGA-RC-A6M6-01 5 134192206 134192206 C G C5orf24 3'UTR 0.33 TCGA-RC-A6M6-01 5 140222105 140222105 C T PCDHA8 Missense_Mutation p.T400I 0.37 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-RC-A6M6-01 5 140558291 140558291 A T PCDHB8 Missense_Mutation p.T226S 0.27 deleterious_low_confidence(0.04) benign(0.112) TCGA-RC-A6M6-01 5 1422073 1422073 C T SLC6A3 Missense_Mutation p.R237Q 0.42 tolerated(0.23) benign(0.091) TCGA-RC-A6M6-01 5 1422086 1422086 G T SLC6A3 Missense_Mutation p.L233M 0.38 tolerated(0.12) possibly_damaging(0.706) TCGA-RC-A6M6-01 5 150322171 150322171 G T ZNF300P1 RNA 0.13 TCGA-RC-A6M6-01 5 158753702 158753702 C T IL12B Splice_Site p.X30_splice 0.29 TCGA-RC-A6M6-01 5 169111319 169111319 G C DOCK2 Missense_Mutation p.M242I 0.29 tolerated(0.09) benign(0.145) TCGA-RC-A6M6-01 5 176070686 176070686 G T EIF4E1B Missense_Mutation p.D83Y 0.29 deleterious(0.01) probably_damaging(0.976) TCGA-RC-A6M6-01 5 176893949 176893949 G A DBN1 Missense_Mutation p.R226C 0.48 deleterious(0) probably_damaging(0.999) TCGA-RC-A6M6-01 5 2747422 2747422 T C IRX2 Intron 0.38 TCGA-RC-A6M6-01 5 3596419 3596419 C - IRX1 Frame_Shift_Del p.A67Gfs*32 0.41 TCGA-RC-A6M6-01 5 37379416 37379416 C T WDR70 5'UTR 0.33 TCGA-RC-A6M6-01 5 96083056 96083056 A G CAST Missense_Mutation p.D390G 0.28 deleterious(0) possibly_damaging(0.565) TCGA-RC-A6M6-01 6 29323327 29323327 G C OR5V1 Missense_Mutation p.L216V 0.30 tolerated(1) benign(0.058) TCGA-RC-A6M6-01 6 29524084 29524084 G C UBD Missense_Mutation p.A24G 0.33 deleterious(0) probably_damaging(0.938) TCGA-RC-A6M6-01 6 30298592 30298593 AG - TRIM39 Frame_Shift_Del p.K164Afs*11 0.24 TCGA-RC-A6M6-01 6 32918508 32918508 C T HLA-DMA Missense_Mutation p.S54N 0.29 tolerated(0.29) benign(0.002) TCGA-RC-A6M6-01 6 35285774 35285774 C T DEF6 Missense_Mutation p.A305V 0.37 tolerated(0.84) benign(0.046) TCGA-RC-A6M6-01 6 40360374 40360374 A T LRFN2 Missense_Mutation p.C560S 0.42 tolerated(0.12) benign(0.146) TCGA-RC-A6M6-01 6 41658400 41658400 C T TFEB Splice_Site p.X156_splice 0.35 TCGA-RC-A6M6-01 6 41712472 41712472 G A PGC Missense_Mutation p.T45I 0.26 tolerated(0.1) benign(0.131) TCGA-RC-A6M6-01 6 44254246 44254246 G C TCTE1 Missense_Mutation p.L101V 0.22 tolerated(0.08) benign(0.059) TCGA-RC-A6M6-01 6 49928115 49928115 C G DEFB114 Missense_Mutation p.G34R 0.43 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-RC-A6M6-01 6 96661535 96661535 G T FUT9 3'UTR 0.44 TCGA-RC-A6M6-01 7 100855190 100855190 C A PLOD3 Missense_Mutation p.S390I 0.69 deleterious(0.03) benign(0.04) TCGA-RC-A6M6-01 7 117234997 117234997 A T CFTR Missense_Mutation p.D835V 0.15 deleterious(0) probably_damaging(0.92) TCGA-RC-A6M6-01 7 120901733 120901733 C - CPED1 Intron 0.09 TCGA-RC-A6M6-01 7 131815030 131815030 G T PLXNA4 3'UTR 0.56 TCGA-RC-A6M6-01 7 140111745 140111745 C G RAB19 Missense_Mutation p.H91Q 0.47 deleterious(0.04) benign(0.107) TCGA-RC-A6M6-01 7 149558298 149558298 C A ZNF862 Silent p.I683I 0.25 TCGA-RC-A6M6-01 7 156619307 156619308 - G LMBR1 Frame_Shift_Ins p.L104Pfs*70 0.46 TCGA-RC-A6M6-01 7 32623585 32623585 A T AVL9 3'UTR 0.40 TCGA-RC-A6M6-01 7 5944735 5944735 C T CCZ1 Missense_Mutation p.T178M 0.34 deleterious(0) possibly_damaging(0.833) TCGA-RC-A6M6-01 7 64166839 64166839 G T ZNF107 Nonsense_Mutation p.E53* 0.32 TCGA-RC-A6M6-01 7 6474591 6474591 C T DAGLB Silent p.G160G 0.38 TCGA-RC-A6M6-01 7 76889445 76889445 A T CCDC146 Missense_Mutation p.E293V 0.16 deleterious(0) possibly_damaging(0.702) TCGA-RC-A6M6-01 7 83014738 83014738 C A SEMA3E Missense_Mutation p.D583Y 0.25 deleterious(0.01) benign(0.223) TCGA-RC-A6M6-01 7 92015870 92015870 T G ANKIB1 Missense_Mutation p.H555Q 0.18 deleterious(0) probably_damaging(1) TCGA-RC-A6M6-01 7 92818525 92818525 C T HEPACAM2 3'UTR 0.60 TCGA-RC-A6M6-01 7 99434099 99434099 T G CYP3A43 Missense_Mutation p.L32R 0.46 deleterious(0.05) benign(0.035) TCGA-RC-A6M6-01 7 99447235 99447235 C T CYP3A43 Silent p.L196L 0.59 TCGA-RC-A6M6-01 7 99999574 99999574 G C ZCWPW1 Missense_Mutation p.A521G 0.07 tolerated(0.11) benign(0.02) TCGA-RC-A6M6-01 8 102679003 102679003 C G GRHL2 3'UTR 0.51 TCGA-RC-A6M6-01 8 118817113 118817113 A C EXT1 Missense_Mutation p.S635A 0.42 deleterious(0.05) benign(0.033) TCGA-RC-A6M6-01 8 119936632 119936632 A C TNFRSF11B Missense_Mutation p.V396G 0.37 tolerated(0.09) benign(0.001) TCGA-RC-A6M6-01 8 133935646 133935646 C G TG Missense_Mutation p.A1531G 0.48 deleterious(0.02) possibly_damaging(0.501) TCGA-RC-A6M6-01 8 139620230 139620230 G T COL22A1 Silent p.G1327G 0.41 TCGA-RC-A6M6-01 8 146108000 146108000 C T ZNF250 Missense_Mutation p.G195R 0.08 tolerated(0.09) benign(0.062) TCGA-RC-A6M6-01 8 37692843 37692843 C A GPR124 Missense_Mutation p.P587Q 0.10 tolerated(0.59) benign(0.002) TCGA-RC-A6M6-01 8 41574509 41574514 AATATT - ANK1 In_Frame_Del p.K487_L489delinsI 0.25 TCGA-RC-A6M6-01 8 56436755 56436757 AGG - XKR4 In_Frame_Del p.E642del 0.30 TCGA-RC-A6M6-01 8 99441726 99441726 T A KCNS2 3'UTR 0.47 TCGA-RC-A6M6-01 9 101498813 101498813 G C ANKS6 Missense_Mutation p.S868R 0.34 tolerated_low_confidence(0.22) benign(0.001) TCGA-RC-A6M6-01 9 131072114 131072114 C T TRUB2 Silent p.K237K 0.22 TCGA-RC-A6M6-01 9 131369944 131369944 G T SPTAN1 Missense_Mutation p.D1370Y 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-RC-A6M6-01 9 139722950 139722951 - AG RABL6 Frame_Shift_Ins p.C107Sfs*9 0.44 TCGA-RC-A6M6-01 9 27949553 27949553 G T LINGO2 Missense_Mutation p.L373M 0.65 deleterious(0.02) possibly_damaging(0.888) TCGA-RC-A6M6-01 9 27949554 27949554 G T LINGO2 Silent p.T372T 0.65 TCGA-RC-A6M6-01 9 35094331 35094331 A C PIGO Missense_Mutation p.D179E 0.54 deleterious(0) probably_damaging(0.999) TCGA-RC-A6M6-01 X 123540198 123540198 C T TENM1 Silent p.T1708T 0.76 TCGA-RC-A6M6-01 X 34149528 34149528 G C FAM47A Missense_Mutation p.P290A 0.79 deleterious(0.02) benign(0.011) TCGA-RC-A6M6-01 X 84561303 84561303 A G POF1B Silent p.L401L 0.77 TCGA-RC-A7S9-01 10 26939568 26939568 A G LINC00202-2 RNA 0.44 TCGA-RC-A7S9-01 10 5437418 5437418 G T TUBAL3 Missense_Mutation p.H90N 0.38 deleterious_low_confidence(0) benign(0.032) TCGA-RC-A7S9-01 10 72358910 72358910 C T PRF1 Silent p.L189L 0.10 TCGA-RC-A7S9-01 11 111724383 111724383 T C ALG9 Missense_Mutation p.I89V 0.21 tolerated(0.51) benign(0.003) TCGA-RC-A7S9-01 11 58477472 58477472 C T GLYAT Missense_Mutation p.D220N 0.47 tolerated(0.37) benign(0.001) TCGA-RC-A7S9-01 11 58979368 58979368 C T MPEG1 Missense_Mutation p.G324D 0.05 tolerated(0.55) benign(0.438) TCGA-RC-A7S9-01 12 10783658 10783658 A G STYK1 Missense_Mutation p.L146P 0.14 deleterious(0) probably_damaging(0.984) TCGA-RC-A7S9-01 12 109637211 109637211 C A ACACB Silent p.R878R 0.51 TCGA-RC-A7S9-01 12 6701152 6701152 G A CHD4 Missense_Mutation p.S1007F 0.48 deleterious(0) possibly_damaging(0.685) TCGA-RC-A7S9-01 13 48953788 48953788 T C RB1 Splice_Site p.X463_splice 0.68 TCGA-RC-A7S9-01 14 77895420 77895420 T G VIPAS39 Missense_Mutation p.N429H 0.38 tolerated(0.13) possibly_damaging(0.617) TCGA-RC-A7S9-01 15 35664124 35664124 G A DPH6 3'UTR 0.12 TCGA-RC-A7S9-01 15 50999898 50999898 A - SPPL2A 3'UTR 0.30 TCGA-RC-A7S9-01 15 63084851 63084851 G T TLN2 Missense_Mutation p.Q1916H 0.06 tolerated(0.44) benign(0.006) TCGA-RC-A7S9-01 16 19873251 19873251 G T GPRC5B Missense_Mutation p.P359T 0.06 tolerated(0.42) benign(0.003) TCGA-RC-A7S9-01 16 68849486 68849486 G A CDH1 Silent p.E463E 0.46 TCGA-RC-A7S9-01 16 74486093 74486093 A C GLG1 Intron 0.29 TCGA-RC-A7S9-01 17 18052893 18052893 C T MYO15A Missense_Mutation p.A2404V 0.05 unknown(0) TCGA-RC-A7S9-01 17 26970215 26970215 G C KIAA0100 Silent p.S121S 0.39 TCGA-RC-A7S9-01 17 29592294 29592294 G A NF1 Missense_Mutation p.S1591N 0.39 tolerated(1) benign(0) TCGA-RC-A7S9-01 17 32648057 32648057 C T CCL8 3'UTR 0.59 TCGA-RC-A7S9-01 17 34149836 34149836 A C TAF15 Missense_Mutation p.Q161H 0.39 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-RC-A7S9-01 17 38209618 38209618 T C MED24 Missense_Mutation p.Q49R 0.06 deleterious(0) possibly_damaging(0.813) TCGA-RC-A7S9-01 17 74539165 74539165 C A PRCD 3'UTR 0.38 TCGA-RC-A7S9-01 18 14537872 14537872 A G POTEC Silent p.A246A 0.46 TCGA-RC-A7S9-01 18 19756976 19756976 C T GATA6 Missense_Mutation p.P399L 0.39 deleterious(0.01) benign(0.014) TCGA-RC-A7S9-01 18 909772 909772 T C ADCYAP1 3'UTR 0.50 TCGA-RC-A7S9-01 19 13003196 13003196 C A GCDH Intron 0.20 TCGA-RC-A7S9-01 19 17442017 17442017 G T ANO8 Silent p.I237I 0.49 TCGA-RC-A7S9-01 19 22271464 22271464 T C ZNF257 Silent p.T304T 0.56 TCGA-RC-A7S9-01 19 4171379 4171379 G A CREB3L3 Splice_Site p.X326_splice 0.24 TCGA-RC-A7S9-01 19 46893621 46893621 C T PPP5C 3'UTR 0.26 TCGA-RC-A7S9-01 19 52468329 52468329 C T ZNF350 Silent p.G459G 0.12 TCGA-RC-A7S9-01 1 114399229 114399229 G A PTPN22 Missense_Mutation p.R141C 0.38 deleterious(0) probably_damaging(1) TCGA-RC-A7S9-01 1 162343882 162343882 C T C1orf111 Missense_Mutation p.E248K 0.25 tolerated_low_confidence(0.38) benign(0.016) TCGA-RC-A7S9-01 1 16577608 16577609 - C FBXO42 Frame_Shift_Ins p.P571Afs*82 0.41 TCGA-RC-A7S9-01 1 236306038 236306038 C A GPR137B Missense_Mutation p.P39H 0.30 deleterious(0.03) probably_damaging(0.991) TCGA-RC-A7S9-01 1 237774131 237774131 C T RYR2 Missense_Mutation p.R1585C 0.41 probably_damaging(0.98) TCGA-RC-A7S9-01 1 89318944 89318944 A - GTF2B Frame_Shift_Del p.T302Qfs*25 0.23 TCGA-RC-A7S9-01 20 34292616 34292616 T C RBM39 Missense_Mutation p.N489S 0.45 tolerated(0.16) benign(0.004) TCGA-RC-A7S9-01 20 60294222 60294249 AGCATCCATGGGTTCTAATCAGAGATTT - RP11-429E11.3 Missense_Mutation 0.46 TCGA-RC-A7S9-01 20 9382162 9382162 C T PLCB4 Silent p.P512P 0.05 TCGA-RC-A7S9-01 21 33032037 33032037 C T SOD1 5'UTR 0.48 TCGA-RC-A7S9-01 21 35258604 35258604 G A ITSN1 Silent p.P1619P 0.43 TCGA-RC-A7S9-01 21 36421229 36421229 G A RUNX1 5'UTR 0.31 TCGA-RC-A7S9-01 21 45534063 45534063 G A PWP2 Missense_Mutation p.G77D 0.65 deleterious(0) probably_damaging(0.998) TCGA-RC-A7S9-01 22 20073936 20073936 G A DGCR8 Silent p.L150L 0.08 TCGA-RC-A7S9-01 22 38823043 38823043 C T KCNJ4 Silent p.P365P 0.12 TCGA-RC-A7S9-01 2 108872149 108872149 G C SULT1C3 Missense_Mutation p.G174A 0.54 deleterious(0.01) probably_damaging(0.995) TCGA-RC-A7S9-01 2 167163101 167163101 C A SCN9A Missense_Mutation p.S129I 0.41 deleterious(0.01) benign(0.007) TCGA-RC-A7S9-01 2 179544702 179544702 C G TTN Missense_Mutation p.V11167L 0.30 TCGA-RC-A7S9-01 2 201527688 201527688 A G AOX1 Missense_Mutation p.H1180R 0.45 deleterious(0) benign(0.25) TCGA-RC-A7S9-01 2 21229749 21229749 T C APOB Missense_Mutation p.I3331V 0.38 benign(0.443) TCGA-RC-A7S9-01 2 222428734 222428734 C T EPHA4 Silent p.G180G 0.49 TCGA-RC-A7S9-01 2 234198547 234198548 - C ATG16L1 Frame_Shift_Ins p.L418Pfs*37 0.32 TCGA-RC-A7S9-01 2 241463442 241463442 G A ANKMY1 Silent p.C475C 0.06 TCGA-RC-A7S9-01 2 27282078 27282078 C A AGBL5 Missense_Mutation p.S632Y 0.43 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-RC-A7S9-01 2 50149064 50149064 C T NRXN1 3'UTR 0.33 TCGA-RC-A7S9-01 2 55185121 55185121 G T EML6 Missense_Mutation p.V1561L 0.36 tolerated(0.21) benign(0.029) TCGA-RC-A7S9-01 3 105459455 105459455 C A CBLB Missense_Mutation p.C289F 0.36 deleterious(0) probably_damaging(1) TCGA-RC-A7S9-01 3 195512493 195512493 A C MUC4 Silent p.P1986P 0.04 TCGA-RC-A7S9-01 3 48610318 48610318 C A COL7A1 Missense_Mutation p.D2270Y 0.38 probably_damaging(0.999) TCGA-RC-A7S9-01 3 49066899 49066899 A G IMPDH2 5'Flank 0.55 TCGA-RC-A7S9-01 3 49162918 49162918 C A LAMB2 Splice_Site p.X830_splice 0.34 TCGA-RC-A7S9-01 3 52361949 52361949 A G DNAH1 Missense_Mutation p.M264V 0.52 benign(0.065) TCGA-RC-A7S9-01 3 58520174 58520174 G T ACOX2 Missense_Mutation p.A79D 0.42 tolerated(0.31) benign(0.005) TCGA-RC-A7S9-01 3 58520175 58520175 C T ACOX2 Missense_Mutation p.A79T 0.42 tolerated(0.38) benign(0.009) TCGA-RC-A7S9-01 3 8665330 8665330 C T SSUH2 Missense_Mutation p.V296M 0.25 deleterious(0.01) probably_damaging(0.939) TCGA-RC-A7S9-01 4 162697194 162697194 T G FSTL5 Missense_Mutation p.M148L 0.44 tolerated(1) benign(0) TCGA-RC-A7S9-01 5 140237151 140237151 C T PCDHA10 Silent p.Y506Y 0.49 TCGA-RC-A7S9-01 5 140558018 140558018 C A PCDHB8 Missense_Mutation p.L135M 0.13 tolerated_low_confidence(0.16) benign(0.01) TCGA-RC-A7S9-01 6 107811746 107811746 G A SOBP 5'UTR 0.11 TCGA-RC-A7S9-01 6 111694495 111694495 C - REV3L Frame_Shift_Del p.G1688Dfs*4 0.23 TCGA-RC-A7S9-01 6 127899881 127899881 G C C6orf58 Missense_Mutation p.D118H 0.42 deleterious(0) probably_damaging(0.985) TCGA-RC-A7S9-01 6 32370894 32370894 T C BTNL2 Missense_Mutation p.Y176C 0.58 tolerated(0.14) probably_damaging(0.95) TCGA-RC-A7S9-01 6 43160821 43160821 C T CUL9 Missense_Mutation p.L755F 0.62 deleterious(0.01) probably_damaging(0.991) TCGA-RC-A7S9-01 6 46797206 46797206 T C MEP1A Missense_Mutation p.Y348H 0.27 deleterious(0) probably_damaging(0.999) TCGA-RC-A7S9-01 7 126173751 126173751 G C GRM8 Missense_Mutation p.P562R 0.55 deleterious(0) probably_damaging(1) TCGA-RC-A7S9-01 7 146825914 146825914 G T CNTNAP2 Nonsense_Mutation p.E357* 0.30 TCGA-RC-A7S9-01 8 18730005 18730005 G A PSD3 Silent p.L123L 0.47 TCGA-RC-A7S9-01 8 20068787 20068787 A C ATP6V1B2 Missense_Mutation p.K188T 0.44 deleterious(0) probably_damaging(0.996) TCGA-RC-A7S9-01 8 37553564 37553564 G A ZNF703 Missense_Mutation p.G23S 0.70 tolerated(1) benign(0.002) TCGA-RC-A7S9-01 8 42146229 42146229 G T IKBKB Missense_Mutation p.E61D 0.19 deleterious(0.02) benign(0.092) TCGA-RC-A7S9-01 8 69030794 69030794 C A PREX2 Missense_Mutation p.N1112K 0.50 deleterious(0.01) benign(0.01) TCGA-RC-A7S9-01 8 72975718 72975718 A T TRPA1 Missense_Mutation p.M214K 0.59 deleterious(0) possibly_damaging(0.556) TCGA-RC-A7S9-01 9 70918928 70918928 C T FOXD4L3 Missense_Mutation p.T354I 0.19 tolerated_low_confidence(0.29) possibly_damaging(0.86) TCGA-RC-A7S9-01 X 65244890 65244890 A G VSIG4 Missense_Mutation p.L306P 0.21 deleterious(0) possibly_damaging(0.736) TCGA-RC-A7S9-01 X 72783044 72783044 G A CHIC1 5'UTR 0.27 TCGA-RC-A7SB-01 10 95459814 95459814 C T FRA10AC1 Missense_Mutation p.C17Y 0.10 tolerated(0.29) benign(0.001) TCGA-RC-A7SB-01 10 99968219 99968219 A G R3HCC1L Silent p.V116V 0.67 TCGA-RC-A7SB-01 11 111965757 111965757 A G SDHD 3'UTR 0.75 TCGA-RC-A7SB-01 11 13378511 13378511 C T ARNTL Intron 0.24 TCGA-RC-A7SB-01 11 134131730 134131730 T C ACAD8 Silent p.D346D 0.48 TCGA-RC-A7SB-01 11 32657339 32657339 T - CCDC73 Frame_Shift_Del p.N363Mfs*38 0.37 TCGA-RC-A7SB-01 12 103237549 103237549 T C PAH Silent p.L358L 0.33 TCGA-RC-A7SB-01 12 120636498 120636498 G A RPLP0 Silent p.S170S 0.31 TCGA-RC-A7SB-01 12 49425062 49425062 T - KMT2D Frame_Shift_Del p.T4476Lfs*43 0.29 TCGA-RC-A7SB-01 12 57663679 57663679 A G R3HDM2 Silent p.L467L 0.27 TCGA-RC-A7SB-01 12 6570035 6570035 T G TAPBPL Missense_Mutation p.L408V 0.41 tolerated(0.55) benign(0.043) TCGA-RC-A7SB-01 12 81101780 81101780 G A MYF6 Silent p.R94R 0.30 TCGA-RC-A7SB-01 13 37524129 37524129 G A ALG5 Nonsense_Mutation p.R309* 0.48 TCGA-RC-A7SB-01 13 58299074 58299074 G C PCDH17 Silent p.A1042A 0.46 TCGA-RC-A7SB-01 13 75884197 75884197 T A TBC1D4 Missense_Mutation p.D825V 0.51 tolerated(0.26) possibly_damaging(0.704) TCGA-RC-A7SB-01 14 77275409 77275409 T C ANGEL1 Silent p.P214P 0.23 TCGA-RC-A7SB-01 15 23889381 23889381 C A MAGEL2 Missense_Mutation p.R567M 0.42 deleterious(0) probably_damaging(0.999) TCGA-RC-A7SB-01 15 29561699 29561699 C A NDNL2 Missense_Mutation p.A71S 0.50 tolerated(1) benign(0.001) TCGA-RC-A7SB-01 15 40584571 40584571 C T PLCB2 Silent p.E800E 0.38 TCGA-RC-A7SB-01 15 42698130 42698151 AAAAAAACCAAGGTAGGTGTGT CAAAAA CAPN3 Splice_Site p.X597_splice 0.36 TCGA-RC-A7SB-01 16 20749100 20749100 T C THUMPD1 Silent p.T195T 0.32 TCGA-RC-A7SB-01 17 36478418 36478418 G C MRPL45 Silent p.L287L 0.47 TCGA-RC-A7SB-01 17 36887631 36887631 A C CISD3 Missense_Mutation p.K48T 0.48 deleterious(0) possibly_damaging(0.903) TCGA-RC-A7SB-01 17 38610218 38610218 G A IGFBP4 Silent p.L182L 0.38 TCGA-RC-A7SB-01 17 56332171 56332171 G A LPO Splice_Site p.X369_splice 0.10 TCGA-RC-A7SB-01 17 61882440 61882440 C G DDX42 Missense_Mutation p.P211A 0.08 tolerated(0.25) benign(0.006) TCGA-RC-A7SB-01 17 68131500 68131500 T A KCNJ16 3'UTR 0.40 TCGA-RC-A7SB-01 17 71208818 71208818 G A FAM104A Missense_Mutation p.A128V 0.32 tolerated_low_confidence(0.17) benign(0.004) TCGA-RC-A7SB-01 17 74077286 74077287 CA - EXOC7 3'Flank 0.31 TCGA-RC-A7SB-01 17 74085293 74085293 T A EXOC7 Missense_Mutation p.E388V 0.42 deleterious(0.01) possibly_damaging(0.889) TCGA-RC-A7SB-01 17 7577509 7577509 C T TP53 Missense_Mutation p.E258K 0.77 deleterious(0) probably_damaging(0.995) TCGA-RC-A7SB-01 18 19359600 19359600 A T MIB1 Missense_Mutation p.I288F 0.37 deleterious(0.03) possibly_damaging(0.827) TCGA-RC-A7SB-01 18 63526260 63526260 G T CDH7 Missense_Mutation p.C491F 0.38 deleterious(0) probably_damaging(1) TCGA-RC-A7SB-01 19 22170097 22170097 C A ZNF208 Missense_Mutation p.K49N 0.43 tolerated(0.09) possibly_damaging(0.69) TCGA-RC-A7SB-01 19 39374291 39374291 C T SIRT2 Missense_Mutation p.E203K 0.44 tolerated(0.24) benign(0.037) TCGA-RC-A7SB-01 19 40698123 40698123 A T MAP3K10 Missense_Mutation p.Q62L 0.10 deleterious(0) benign(0.061) TCGA-RC-A7SB-01 19 40872766 40872766 C T PLD3 Silent p.G63G 0.47 TCGA-RC-A7SB-01 19 43098033 43098033 C A CEACAM8 Missense_Mutation p.W28C 0.43 deleterious(0) probably_damaging(0.996) TCGA-RC-A7SB-01 19 43762554 43762554 T C PSG9 Missense_Mutation p.E348G 0.67 tolerated(0.05) benign(0.064) TCGA-RC-A7SB-01 19 4498350 4498350 T C HDGFRP2 Missense_Mutation p.F484L 0.33 tolerated(0.05) benign(0.294) TCGA-RC-A7SB-01 19 53740390 53740390 G C ZNF677 Silent p.L530L 0.42 TCGA-RC-A7SB-01 19 54307234 54307234 G T NLRP12 Missense_Mutation p.H853N 0.34 tolerated(0.08) benign(0.013) TCGA-RC-A7SB-01 19 56539102 56539102 G A NLRP5 Silent p.L501L 0.41 TCGA-RC-A7SB-01 1 104160634 104160634 G T AMY2A Missense_Mutation p.R76I 0.36 deleterious(0) probably_damaging(1) TCGA-RC-A7SB-01 1 211486835 211486835 A G RCOR3 Missense_Mutation p.T463A 0.35 tolerated(1) benign(0) TCGA-RC-A7SB-01 1 36809753 36809754 GC - STK40 Frame_Shift_Del p.R284Qfs*11 0.41 TCGA-RC-A7SB-01 20 3209657 3209657 C A SLC4A11 Missense_Mutation p.R716S 0.42 deleterious(0) probably_damaging(0.94) TCGA-RC-A7SB-01 20 34828481 34828481 G A AAR2 Missense_Mutation p.D231N 0.32 deleterious(0) probably_damaging(1) TCGA-RC-A7SB-01 20 585251 585251 C A TCF15 Missense_Mutation p.R195L 0.44 deleterious_low_confidence(0) possibly_damaging(0.68) TCGA-RC-A7SB-01 21 17238655 17238655 G C USP25 Missense_Mutation p.E863Q 0.26 deleterious(0.01) possibly_damaging(0.788) TCGA-RC-A7SB-01 22 20307496 20307496 C T DGCR6L Missense_Mutation p.A6T 0.09 tolerated_low_confidence(0.06) benign(0.065) TCGA-RC-A7SB-01 2 141299516 141299516 T C LRP1B Missense_Mutation p.T2407A 0.39 benign(0.217) TCGA-RC-A7SB-01 2 152499357 152499357 T C NEB Silent p.K2729K 0.30 TCGA-RC-A7SB-01 2 152525647 152525647 T G NEB Splice_Site p.X1503_splice 0.31 TCGA-RC-A7SB-01 2 162273413 162273413 C T TBR1 Silent p.S164S 0.37 TCGA-RC-A7SB-01 2 191110920 191110920 T A HIBCH Nonsense_Mutation p.K257* 0.42 TCGA-RC-A7SB-01 2 75081454 75081454 A G HK2 Missense_Mutation p.D33G 0.09 tolerated(0.13) possibly_damaging(0.472) TCGA-RC-A7SB-01 3 107491784 107491817 TTTCCTGATTTTTCTTATTCTGCCAGTAGCAAGA - BBX Frame_Shift_Del p.F406* 0.29 TCGA-RC-A7SB-01 3 136676881 136676881 A G IL20RB 5'UTR 0.36 TCGA-RC-A7SB-01 3 141163098 141163098 A G ZBTB38 Missense_Mutation p.N623S 0.33 tolerated(0.74) benign(0.003) TCGA-RC-A7SB-01 3 32181733 32181733 G A GPD1L Missense_Mutation p.G127D 0.29 tolerated(0.22) probably_damaging(0.922) TCGA-RC-A7SB-01 3 64666990 64666990 T A ADAMTS9 Missense_Mutation p.Q189L 0.47 tolerated(1) benign(0) TCGA-RC-A7SB-01 3 9517712 9517712 G A SETD5 Silent p.V1422V 0.40 TCGA-RC-A7SB-01 4 110862303 110862303 T C EGF Splice_Site p.X109_splice 0.54 TCGA-RC-A7SB-01 4 11401189 11401189 T C HS3ST1 Silent p.R147R 0.44 TCGA-RC-A7SB-01 5 13700904 13700904 T C DNAH5 Missense_Mutation p.D4523G 0.34 possibly_damaging(0.822) TCGA-RC-A7SB-01 5 140216124 140216124 C G PCDHA7 Missense_Mutation p.T719R 0.34 deleterious_low_confidence(0) benign(0.394) TCGA-RC-A7SB-01 5 140856286 140856286 C A PCDHGC3 Silent p.A201A 0.40 TCGA-RC-A7SB-01 5 176894571 176894571 C T DBN1 Missense_Mutation p.G132R 0.08 deleterious(0.03) probably_damaging(0.963) TCGA-RC-A7SB-01 5 34823713 34823713 A G RAI14 Missense_Mutation p.N592S 0.37 tolerated(0.06) benign(0.053) TCGA-RC-A7SB-01 5 82940454 82940454 C A HAPLN1 Missense_Mutation p.G168V 0.44 deleterious(0) probably_damaging(0.989) TCGA-RC-A7SB-01 6 154411035 154411035 C G OPRM1 Missense_Mutation p.T215S 0.45 tolerated(0.32) probably_damaging(0.919) TCGA-RC-A7SB-01 6 157150470 157150470 G A ARID1B Missense_Mutation p.G551D 0.40 probably_damaging(0.997) TCGA-RC-A7SB-01 6 159655130 159655130 C T FNDC1 Silent p.L1196L 0.51 TCGA-RC-A7SB-01 6 24358008 24358008 T A KAAG1 Silent p.A47A 0.20 TCGA-RC-A7SB-01 6 43480552 43480552 C T YIPF3 Missense_Mutation p.A243T 0.09 tolerated(0.39) benign(0.015) TCGA-RC-A7SB-01 7 120595786 120595786 A G ING3 Intron 0.35 TCGA-RC-A7SB-01 7 126086303 126086303 G A GRM8 Missense_Mutation p.R852C 0.42 deleterious(0) possibly_damaging(0.791) TCGA-RC-A7SB-01 7 77240326 77240326 A T PTPN12 Missense_Mutation p.Y301F 0.45 tolerated(0.1) benign(0.032) TCGA-RC-A7SB-01 8 125565827 125565828 - TAT MTSS1 Nonsense_Mutation p.S557_Y558ins* 0.37 TCGA-RC-A7SB-01 8 1952245 1952245 G A KBTBD11 3'UTR 0.21 TCGA-RC-A7SB-01 8 38050228 38050228 A T BAG4 Missense_Mutation p.Y98F 0.52 deleterious(0.04) probably_damaging(0.993) TCGA-RC-A7SB-01 8 94748274 94748274 T C RBM12B Missense_Mutation p.Y122C 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-RC-A7SB-01 9 127631542 127631542 C A ARPC5L 5'UTR 0.55 TCGA-RC-A7SB-01 9 130868160 130868160 G A SLC25A25 Silent p.Q300Q 0.11 TCGA-RC-A7SB-01 9 140176281 140176281 C A TOR4A 3'UTR 0.50 TCGA-RC-A7SB-01 X 140953292 140953292 C T MAGEC3 Silent p.A53A 0.75 TCGA-RC-A7SB-01 X 70389592 70389592 A G NLGN3 Missense_Mutation p.Y731C 0.86 deleterious(0) probably_damaging(0.999) TCGA-RC-A7SB-01 X 7889813 7889813 C A PNPLA4 Missense_Mutation p.A118S 0.69 tolerated(0.27) benign(0.004) TCGA-RC-A7SF-01 10 111642256 111642256 G A XPNPEP1 Silent p.L325L 0.45 TCGA-RC-A7SF-01 10 129224199 129224199 C T DOCK1 Missense_Mutation p.P1592L 0.11 deleterious(0) possibly_damaging(0.76) TCGA-RC-A7SF-01 10 31134175 31134175 C T ZNF438 Silent p.Q734Q 0.28 TCGA-RC-A7SF-01 10 6521125 6521125 G T PRKCQ Silent p.V394V 0.07 TCGA-RC-A7SF-01 10 75013758 75013758 A G TTC18 Missense_Mutation p.V1114A 0.58 deleterious(0) possibly_damaging(0.449) TCGA-RC-A7SF-01 10 94267913 94267913 A G IDE Silent p.F370F 0.38 TCGA-RC-A7SF-01 10 95241980 95241980 A T MYOF 5'Flank 0.50 TCGA-RC-A7SF-01 10 95276895 95276895 G A CEP55 Missense_Mutation p.E295K 0.45 deleterious(0.02) probably_damaging(0.994) TCGA-RC-A7SF-01 11 121177921 121177921 G A SC5D Silent p.L200L 0.27 TCGA-RC-A7SF-01 11 5530137 5530137 G A UBQLN3 Missense_Mutation p.R218W 0.32 deleterious(0) probably_damaging(0.984) TCGA-RC-A7SF-01 11 592654 592654 C G PHRF1 Silent p.L200L 0.32 TCGA-RC-A7SF-01 11 70049785 70049785 G T FADD Missense_Mutation p.D74Y 0.82 deleterious(0) probably_damaging(1) TCGA-RC-A7SF-01 11 76063483 76063483 C T PRKRIR Silent p.Q237Q 0.71 TCGA-RC-A7SF-01 11 77301291 77301291 T C AQP11 Missense_Mutation p.F85S 0.68 deleterious(0.05) probably_damaging(0.992) TCGA-RC-A7SF-01 12 122957905 122957906 - TTGA ZCCHC8 3'UTR 0.46 TCGA-RC-A7SF-01 12 52845422 52845422 G T KRT6B Silent p.P147P 0.31 TCGA-RC-A7SF-01 12 52845423 52845423 G A KRT6B Missense_Mutation p.P147L 0.31 deleterious(0) probably_damaging(1) TCGA-RC-A7SF-01 12 57957422 57957422 T C KIF5A Silent p.N79N 0.34 TCGA-RC-A7SF-01 12 77427753 77427753 T G E2F7 Missense_Mutation p.Q398P 0.52 tolerated(0.18) benign(0.009) TCGA-RC-A7SF-01 13 80911669 80911669 C A SPRY2 Missense_Mutation p.G58W 0.49 deleterious(0) possibly_damaging(0.841) TCGA-RC-A7SF-01 14 94594892 94594892 C G IFI27L2 Missense_Mutation p.G53A 0.24 tolerated(0.07) probably_damaging(0.939) TCGA-RC-A7SF-01 15 42149449 42149449 G A SPTBN5 Missense_Mutation p.R2870W 0.22 possibly_damaging(0.785) TCGA-RC-A7SF-01 15 58830682 58830682 C T LIPC Missense_Mutation p.S80F 0.26 deleterious(0) probably_damaging(0.999) TCGA-RC-A7SF-01 15 63336290 63336290 A G TPM1 Missense_Mutation p.Y60C 0.33 tolerated(0.06) probably_damaging(0.919) TCGA-RC-A7SF-01 15 85610299 85610299 T A PDE8A Missense_Mutation p.C100S 0.41 tolerated(0.16) probably_damaging(0.999) TCGA-RC-A7SF-01 15 85610300 85610300 G T PDE8A Missense_Mutation p.C100F 0.41 deleterious(0) probably_damaging(1) TCGA-RC-A7SF-01 16 69689669 69689669 T C NFAT5 Missense_Mutation p.V388A 0.64 probably_damaging(0.998) TCGA-RC-A7SF-01 17 26898476 26898476 C T PIGS Intron 0.38 TCGA-RC-A7SF-01 17 48745041 48745041 G A ABCC3 Missense_Mutation p.G520S 0.37 tolerated(0.25) benign(0.009) TCGA-RC-A7SF-01 17 72540897 72540897 A T CD300C Missense_Mutation p.I84N 0.30 deleterious(0) probably_damaging(1) TCGA-RC-A7SF-01 17 7483796 7483796 T C CD68 Missense_Mutation p.S194P 0.47 tolerated(0.08) probably_damaging(0.95) TCGA-RC-A7SF-01 17 79637333 79637334 AG - CCDC137 Frame_Shift_Del p.R117Efs*5 0.16 TCGA-RC-A7SF-01 18 5291933 5291933 A T ZBTB14 Missense_Mutation p.Y92N 0.57 deleterious(0) probably_damaging(0.998) TCGA-RC-A7SF-01 19 12902979 12902979 C A JUNB Missense_Mutation p.Q132K 0.48 deleterious(0) probably_damaging(0.978) TCGA-RC-A7SF-01 19 13211948 13211948 G A LYL1 Missense_Mutation p.T13I 0.26 deleterious_low_confidence(0) benign(0.299) TCGA-RC-A7SF-01 19 19651990 19651990 C T CILP2 Missense_Mutation p.P176L 0.42 tolerated(0.1) benign(0.122) TCGA-RC-A7SF-01 19 21477158 21477158 C T ZNF708 Missense_Mutation p.A204T 0.24 tolerated(0.1) possibly_damaging(0.461) TCGA-RC-A7SF-01 19 40900384 40900384 T A PRX Missense_Mutation p.Q1292L 0.38 deleterious(0) benign(0.145) TCGA-RC-A7SF-01 19 41096160 41096160 G T SHKBP1 Missense_Mutation p.V534L 0.28 tolerated(0.1) benign(0.044) TCGA-RC-A7SF-01 19 41594950 41594950 C T CYP2A13 Silent p.S99S 0.38 TCGA-RC-A7SF-01 19 44589934 44589934 G A ZNF284 Silent p.Q101Q 0.09 TCGA-RC-A7SF-01 19 49143430 49143430 A T CA11 Missense_Mutation p.S131R 0.44 tolerated(0.1) benign(0.042) TCGA-RC-A7SF-01 1 161011514 161011514 C A USF1 Silent p.S133S 0.58 TCGA-RC-A7SF-01 1 161254248 161254248 A C PCP4L1 Silent p.R62R 0.33 TCGA-RC-A7SF-01 1 220406191 220406191 A C RAB3GAP2 Missense_Mutation p.W44G 0.44 deleterious(0.03) probably_damaging(0.992) TCGA-RC-A7SF-01 1 33235673 33235673 G T KIAA1522 Missense_Mutation p.R298L 0.45 tolerated(0.08) unknown(0) TCGA-RC-A7SF-01 1 39748038 39748038 C A MACF1 Missense_Mutation p.H234Q 0.33 possibly_damaging(0.904) TCGA-RC-A7SF-01 1 54359901 54359901 A G DIO1 Silent p.P6P 0.27 TCGA-RC-A7SF-01 1 64643503 64643503 G T ROR1 Silent p.L593L 0.40 TCGA-RC-A7SF-01 20 40979316 40979316 G T PTPRT Missense_Mutation p.T606N 0.46 deleterious(0) benign(0.326) TCGA-RC-A7SF-01 22 24573522 24573522 G A CABIN1 Missense_Mutation p.A2086T 0.47 tolerated_low_confidence(0.48) benign(0) TCGA-RC-A7SF-01 22 38379513 38379513 G T SOX10 Silent p.R93R 0.57 TCGA-RC-A7SF-01 22 40060133 40060133 C A CACNA1I Missense_Mutation p.T1212K 0.35 deleterious(0) possibly_damaging(0.832) TCGA-RC-A7SF-01 22 46677505 46677505 A G TTC38 Missense_Mutation p.I209V 0.33 tolerated(0.26) benign(0.003) TCGA-RC-A7SF-01 2 103431388 103431388 A G TMEM182 Silent p.L217L 0.33 TCGA-RC-A7SF-01 2 1204797 1204797 G T SNTG2 Silent p.S200S 0.45 TCGA-RC-A7SF-01 2 169828460 169828460 A G ABCB11 Missense_Mutation p.I512T 0.36 deleterious(0) probably_damaging(1) TCGA-RC-A7SF-01 2 175624301 175624301 T G CHRNA1 Missense_Mutation p.Y35S 0.27 deleterious(0.01) probably_damaging(1) TCGA-RC-A7SF-01 2 204009591 204009591 G T NBEAL1 Missense_Mutation p.C1677F 0.36 deleterious(0) possibly_damaging(0.873) TCGA-RC-A7SF-01 2 219614829 219614829 A G TTLL4 Missense_Mutation p.I945V 0.33 tolerated(1) benign(0.001) TCGA-RC-A7SF-01 2 226378129 226378129 G - NYAP2 Frame_Shift_Del p.G89Afs*9 0.32 TCGA-RC-A7SF-01 2 241664710 241664710 C T KIF1A Missense_Mutation p.G1412R 0.38 deleterious(0.03) probably_damaging(1) TCGA-RC-A7SF-01 2 71221800 71221800 G A TEX261 Intron 0.11 TCGA-RC-A7SF-01 3 100275609 100275609 G T TMEM45A Missense_Mutation p.A66S 0.40 tolerated(0.08) benign(0.008) TCGA-RC-A7SF-01 3 119466699 119466699 T C MAATS1 Missense_Mutation p.V698A 0.30 deleterious(0) probably_damaging(0.952) TCGA-RC-A7SF-01 3 27152780 27152780 G A NEK10 Missense_Mutation p.H1168Y 0.41 tolerated_low_confidence(1) benign(0.001) TCGA-RC-A7SF-01 3 28520305 28520305 C A ZCWPW2 Missense_Mutation p.P165T 0.35 tolerated(0.18) benign(0.113) TCGA-RC-A7SF-01 3 46000930 46000930 T C FYCO1 Missense_Mutation p.D1181G 0.30 tolerated(0.29) probably_damaging(1) TCGA-RC-A7SF-01 3 62467525 62467525 G T CADPS Missense_Mutation p.P1016T 0.31 tolerated(0.06) possibly_damaging(0.641) TCGA-RC-A7SF-01 3 73453378 73453378 T G PDZRN3 Missense_Mutation p.T363P 0.35 deleterious(0) probably_damaging(0.92) TCGA-RC-A7SF-01 4 110925746 110925746 G T EGF Nonsense_Mutation p.E1087* 0.29 TCGA-RC-A7SF-01 4 166981307 166981307 G A TLL1 Silent p.V658V 0.29 TCGA-RC-A7SF-01 4 1720290 1720298 GGGGCCTGG - TMEM129 In_Frame_Del p.Q88_P90del 0.35 TCGA-RC-A7SF-01 4 174242872 174242873 - A GALNT7 3'UTR 0.44 TCGA-RC-A7SF-01 4 177241334 177241334 G A SPCS3 Missense_Mutation p.S36N 0.41 tolerated(0.32) benign(0.098) TCGA-RC-A7SF-01 4 47563023 47563023 A T ATP10D Missense_Mutation p.S867C 0.39 deleterious(0) probably_damaging(0.998) TCGA-RC-A7SF-01 4 77676213 77676213 T G SHROOM3 Missense_Mutation p.L1526R 0.33 deleterious(0.03) probably_damaging(0.98) TCGA-RC-A7SF-01 5 151771628 151771628 T C NMUR2 3'UTR 0.25 TCGA-RC-A7SF-01 5 176562319 176562319 T G NSD1 Missense_Mutation p.L72R 0.51 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-RC-A7SF-01 5 31451640 31451640 C A DROSHA Missense_Mutation p.Q894H 0.48 tolerated(0.05) benign(0.248) TCGA-RC-A7SF-01 6 105577315 105577315 T C BVES Missense_Mutation p.N97S 0.38 tolerated(0.16) benign(0.018) TCGA-RC-A7SF-01 6 10731039 10731039 G C TMEM14C 3'UTR 0.31 TCGA-RC-A7SF-01 6 110146392 110146392 G A FIG4 Missense_Mutation p.S883N 0.08 deleterious(0.01) benign(0.018) TCGA-RC-A7SF-01 6 116601345 116601345 A G TSPYL1 5'Flank 0.20 TCGA-RC-A7SF-01 6 36651926 36651926 G - CDKN1A Frame_Shift_Del p.A17Pfs*14 0.25 TCGA-RC-A7SF-01 6 36652015 36652015 G - CDKN1A Frame_Shift_Del p.R46Lfs*102 0.21 TCGA-RC-A7SF-01 6 44119668 44119668 C T TMEM63B Missense_Mutation p.R587C 0.15 deleterious(0) probably_damaging(0.996) TCGA-RC-A7SF-01 6 71243558 71243558 G T FAM135A Splice_Site p.X1322_splice 0.25 TCGA-RC-A7SF-01 7 100732207 100732207 C T TRIM56 Silent p.G538G 0.30 TCGA-RC-A7SF-01 7 12269401 12269401 C T TMEM106B Missense_Mutation p.R180C 0.32 tolerated(0.08) probably_damaging(0.916) TCGA-RC-A7SF-01 7 37890296 37890296 A T NME8 Nonsense_Mutation p.K53* 0.28 TCGA-RC-A7SF-01 7 6185161 6185161 T A USP42 Silent p.P335P 0.28 TCGA-RC-A7SF-01 7 75610852 75610852 T A POR Missense_Mutation p.I220N 0.20 deleterious(0) possibly_damaging(0.492) TCGA-RC-A7SF-01 7 75610853 75610853 C G POR Missense_Mutation p.I220M 0.20 tolerated(0.21) benign(0.133) TCGA-RC-A7SF-01 7 82582627 82582636 TCACTAAATT - PCLO Frame_Shift_Del p.N2545Lfs*34 0.22 TCGA-RC-A7SF-01 8 120431544 120431544 G A NOV Missense_Mutation p.V246M 0.22 deleterious(0.02) possibly_damaging(0.734) TCGA-RC-A7SF-01 8 123965871 123965871 C T ZHX2 Silent p.A707A 0.75 TCGA-RC-A7SF-01 8 124265573 124265573 C T ZHX1 Missense_Mutation p.D872N 0.80 deleterious_low_confidence(0.01) probably_damaging(0.91) TCGA-RC-A7SF-01 8 22471762 22471762 G C CCAR2 Missense_Mutation p.E288Q 0.64 deleterious(0.03) benign(0.39) TCGA-RC-A7SF-01 8 41552758 41552758 T C ANK1 Missense_Mutation p.K1059E 0.83 deleterious(0) benign(0.303) TCGA-RC-A7SF-01 8 79652259 79652259 C A IL7 Missense_Mutation p.R69I 0.12 deleterious(0) possibly_damaging(0.9) TCGA-RC-A7SF-01 9 107457526 107457526 C T OR13D1 Missense_Mutation p.A275V 0.17 deleterious(0) possibly_damaging(0.899) TCGA-RC-A7SF-01 X 129813524 129813524 T C ENOX2 Missense_Mutation p.Y180C 0.87 deleterious(0) probably_damaging(0.956) TCGA-RC-A7SF-01 X 78618536 78618536 G A ITM2A Missense_Mutation p.A115V 0.80 tolerated(1) benign(0.078) TCGA-RC-A7SF-01 X 9677338 9677338 C G TBL1X Silent p.S429S 0.65 TCGA-RC-A7SH-01 10 120801816 120801816 C G EIF3A Silent p.G1072G 0.18 TCGA-RC-A7SH-01 10 121587247 121587247 T C INPP5F Silent p.L1118L 0.49 TCGA-RC-A7SH-01 10 134942342 134942342 C T GPR123 Missense_Mutation p.A337V 0.32 tolerated(0.22) benign(0.008) TCGA-RC-A7SH-01 10 60577443 60577443 G C BICC1 Silent p.L885L 0.05 TCGA-RC-A7SH-01 10 79397504 79397504 C T KCNMA1 5'Flank 0.40 TCGA-RC-A7SH-01 10 90521199 90521199 T C LIPN Missense_Mutation p.C13R 0.34 tolerated(0.35) benign(0) TCGA-RC-A7SH-01 10 99994235 99994235 A G R3HCC1L Missense_Mutation p.D665G 0.62 deleterious(0) probably_damaging(1) TCGA-RC-A7SH-01 12 14929035 14929035 G A H2AFJ 3'UTR 0.44 TCGA-RC-A7SH-01 12 26275005 26275005 A T BHLHE41 Silent p.A481A 0.41 TCGA-RC-A7SH-01 12 27133508 27133508 T C TM7SF3 Missense_Mutation p.K343E 0.22 tolerated(0.72) benign(0.01) TCGA-RC-A7SH-01 12 46244622 46244622 G C ARID2 Missense_Mutation p.V906L 0.06 tolerated_low_confidence(0.7) benign(0.019) TCGA-RC-A7SH-01 12 54448087 54448087 C T HOXC4 Silent p.S127S 0.83 TCGA-RC-A7SH-01 12 9248257 9248257 G T A2M Missense_Mutation p.P631T 0.44 tolerated(0.31) benign(0.045) TCGA-RC-A7SH-01 12 99071268 99071268 A G APAF1 Missense_Mutation p.H620R 0.47 tolerated(0.25) possibly_damaging(0.895) TCGA-RC-A7SH-01 13 100172304 100172304 A T TM9SF2 Missense_Mutation p.Q85L 0.67 tolerated(0.33) benign(0.41) TCGA-RC-A7SH-01 13 46170693 46170693 C T FAM194B Missense_Mutation p.D150N 0.11 tolerated(0.27) benign(0.047) TCGA-RC-A7SH-01 13 46288182 46288182 A G SPERT Missense_Mutation p.E341G 0.75 tolerated(0.24) benign(0.057) TCGA-RC-A7SH-01 14 100795930 100795932 TCT - SLC25A47 In_Frame_Del p.F293del 0.69 TCGA-RC-A7SH-01 14 67805346 67805346 A G ATP6V1D Missense_Mutation p.F246L 0.81 deleterious(0.01) benign(0.162) TCGA-RC-A7SH-01 15 74043526 74043526 G T C15orf59 5'UTR 0.13 TCGA-RC-A7SH-01 16 14041908 14041908 A G ERCC4 Missense_Mutation p.S819G 0.38 tolerated(1) benign(0) TCGA-RC-A7SH-01 16 89967154 89967154 C T TCF25 Nonsense_Mutation p.Q445* 0.84 TCGA-RC-A7SH-01 17 20013852 20013852 A G SPECC1 Missense_Mutation p.E87G 0.44 deleterious(0) probably_damaging(0.999) TCGA-RC-A7SH-01 17 66538937 66538937 G - FAM20A Frame_Shift_Del p.R276Dfs*10 0.27 TCGA-RC-A7SH-01 17 7578260 7578260 C A TP53 Missense_Mutation p.V197L 0.79 deleterious(0.03) probably_damaging(0.999) TCGA-RC-A7SH-01 17 8243727 8243727 G T ODF4 Missense_Mutation p.V120F 0.08 deleterious(0) possibly_damaging(0.9) TCGA-RC-A7SH-01 18 13645817 13645817 A G LDLRAD4 3'UTR 0.58 TCGA-RC-A7SH-01 19 19230836 19230836 C T TMEM161A Missense_Mutation p.R448H 0.38 deleterious(0) probably_damaging(1) TCGA-RC-A7SH-01 19 3542780 3542780 T A MFSD12 Nonstop_Mutation p.*539Lext*16 0.33 TCGA-RC-A7SH-01 19 55385744 55385744 C T FCAR 5'UTR 0.06 TCGA-RC-A7SH-01 19 57286077 57286077 A G ZIM2 Silent p.T521T 0.44 TCGA-RC-A7SH-01 1 10211424 10211424 A G UBE4B Missense_Mutation p.I911V 0.88 tolerated(0.11) benign(0.085) TCGA-RC-A7SH-01 1 150255908 150255908 A G C1orf51 Silent p.P77P 0.47 TCGA-RC-A7SH-01 1 155735915 155735915 G A GON4L Missense_Mutation p.R1117W 0.05 tolerated_low_confidence(0.05) probably_damaging(0.992) TCGA-RC-A7SH-01 1 157095415 157095415 G A ETV3 Missense_Mutation p.P253S 0.21 deleterious(0) possibly_damaging(0.619) TCGA-RC-A7SH-01 1 158607950 158607950 T G SPTA1 Missense_Mutation p.K1688Q 0.24 tolerated(0.13) benign(0.079) TCGA-RC-A7SH-01 1 181754899 181754899 G A CACNA1E Silent p.E1910E 0.28 TCGA-RC-A7SH-01 1 21031226 21031226 G A KIF17 Silent p.D279D 0.93 TCGA-RC-A7SH-01 1 46654650 46654653 GGCC - POMGNT1 Splice_Site p.X662_splice 0.85 TCGA-RC-A7SH-01 1 46654654 46654654 T A POMGNT1 Splice_Site p.X662_splice 0.92 TCGA-RC-A7SH-01 1 47150244 47150244 T C EFCAB14 Missense_Mutation p.K369E 0.73 tolerated(0.26) benign(0.018) TCGA-RC-A7SH-01 21 15750651 15750651 C G HSPA13 Missense_Mutation p.R150P 0.33 tolerated(0.1) possibly_damaging(0.796) TCGA-RC-A7SH-01 22 20302024 20302024 C - DGCR6L 3'UTR 0.24 TCGA-RC-A7SH-01 22 51020217 51020217 G C CHKB Nonsense_Mutation p.Y136* 0.46 TCGA-RC-A7SH-01 2 110374819 110374819 G A SOWAHC 3'UTR 0.06 TCGA-RC-A7SH-01 2 132238155 132238155 G A TUBA3D Missense_Mutation p.E297K 0.28 deleterious_low_confidence(0) benign(0.296) TCGA-RC-A7SH-01 2 164466190 164466190 G T FIGN Missense_Mutation p.P718T 0.43 tolerated(0.1) probably_damaging(0.985) TCGA-RC-A7SH-01 2 171804921 171804921 C T GORASP2 Missense_Mutation p.S42F 0.51 deleterious(0) benign(0.164) TCGA-RC-A7SH-01 2 179736264 179736264 T A CCDC141 Nonsense_Mutation p.K699* 0.51 TCGA-RC-A7SH-01 2 180810422 180810422 C G CWC22 Missense_Mutation p.G721R 0.40 tolerated_low_confidence(0.8) benign(0.001) TCGA-RC-A7SH-01 2 189898929 189898929 T C COL5A2 Missense_Mutation p.N1456S 0.05 unknown(0) TCGA-RC-A7SH-01 2 198572012 198572012 C G MARS2 3'UTR 0.31 TCGA-RC-A7SH-01 2 24930641 24930641 C G NCOA1 Missense_Mutation p.L768V 0.38 deleterious(0.04) probably_damaging(0.996) TCGA-RC-A7SH-01 3 172351356 172351356 C T NCEH1 Missense_Mutation p.G419E 0.32 deleterious(0) probably_damaging(1) TCGA-RC-A7SH-01 3 179501966 179501966 G A USP13 3'UTR 0.42 TCGA-RC-A7SH-01 3 193380662 193380662 G T OPA1 Nonsense_Mutation p.E840* 0.43 TCGA-RC-A7SH-01 3 193380663 193380663 A T OPA1 Missense_Mutation p.E840V 0.44 tolerated(0.21) benign(0.004) TCGA-RC-A7SH-01 3 19556821 19556821 G A KCNH8 Missense_Mutation p.D815N 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-RC-A7SH-01 3 88040639 88040639 T A HTR1F Missense_Mutation p.L247Q 0.88 tolerated(0.59) benign(0.009) TCGA-RC-A7SH-01 4 103987527 103987527 C T SLC9B2 Silent p.L76L 0.82 TCGA-RC-A7SH-01 4 20706145 20706145 A T PACRGL Missense_Mutation p.N14I 0.35 deleterious_low_confidence(0.01) benign(0.197) TCGA-RC-A7SH-01 4 22820517 22820517 C T GBA3 Nonsense_Mutation p.R461* 0.38 TCGA-RC-A7SH-01 5 161116134 161116134 C T GABRA6 Silent p.L135L 0.21 TCGA-RC-A7SH-01 5 167937603 167937603 G A RARS Missense_Mutation p.R455H 0.07 deleterious(0) probably_damaging(0.989) TCGA-RC-A7SH-01 5 26881658 26881658 G A CDH9 Missense_Mutation p.R653W 0.46 deleterious(0) probably_damaging(0.998) TCGA-RC-A7SH-01 5 86564269 86564269 A G RASA1 Translation_Start_Site p.M1? 0.45 deleterious_low_confidence(0) benign(0.019) TCGA-RC-A7SH-01 5 96315623 96315623 A G LNPEP Missense_Mutation p.I267M 0.54 deleterious(0.04) benign(0.026) TCGA-RC-A7SH-01 6 116837131 116837131 G T FAM26E Silent p.V303V 0.13 TCGA-RC-A7SH-01 6 22570024 22570024 G A HDGFL1 Missense_Mutation p.G74S 0.49 deleterious(0.01) probably_damaging(0.918) TCGA-RC-A7SH-01 6 26157314 26157314 C G HIST1H1E 3'UTR 0.41 TCGA-RC-A7SH-01 6 80629233 80629233 G T ELOVL4 Silent p.I191I 0.37 TCGA-RC-A7SH-01 6 80629234 80629234 A T ELOVL4 Missense_Mutation p.I191N 0.35 deleterious(0) probably_damaging(0.998) TCGA-RC-A7SH-01 7 107559712 107559712 G C DLD 3'UTR 0.47 TCGA-RC-A7SH-01 7 113519477 113519477 G A PPP1R3A Missense_Mutation p.A557V 0.51 tolerated(0.06) benign(0.009) TCGA-RC-A7SH-01 7 150767561 150767561 A T SLC4A2 Silent p.P489P 0.59 TCGA-RC-A7SH-01 7 27196120 27196120 C A HOXA7 Silent p.T15T 0.39 TCGA-RC-A7SH-01 7 81599250 81599250 T A CACNA2D1 Missense_Mutation p.Y752F 0.36 deleterious(0) probably_damaging(0.998) TCGA-RC-A7SH-01 7 91763824 91763824 G A CYP51A1 5'UTR 0.45 TCGA-RC-A7SH-01 8 124232443 124232443 A G C8orf76 Missense_Mutation p.V348A 0.35 tolerated(1) benign(0) TCGA-RC-A7SH-01 8 139890313 139890313 C T COL22A1 Missense_Mutation p.G113D 0.27 unknown(0) TCGA-RC-A7SH-01 8 89128908 89128908 G A MMP16 Missense_Mutation p.P304L 0.33 deleterious(0.04) possibly_damaging(0.564) TCGA-RC-A7SH-01 9 120466672 120466672 T C TLR4 5'UTR 0.30 TCGA-RC-A7SH-01 9 12821394 12821394 A G LURAP1L Missense_Mutation p.R108G 0.47 deleterious(0) probably_damaging(0.976) TCGA-RC-A7SH-01 9 134334701 134334701 G A PRRC2B Silent p.P454P 0.18 TCGA-RC-A7SH-01 9 136031344 136031344 T C GBGT1 Intron 0.56 TCGA-RC-A7SH-01 9 21333361 21333361 C A KLHL9 Missense_Mutation p.G500C 0.39 deleterious(0) probably_damaging(1) TCGA-RC-A7SH-01 X 131212174 131212174 G T FRMD7 Missense_Mutation p.T624K 0.91 tolerated(1) benign(0.187) TCGA-RC-A7SH-01 X 144904694 144904694 G A SLITRK2 Missense_Mutation p.G251R 0.95 deleterious(0.02) probably_damaging(0.998) TCGA-RC-A7SH-01 X 20034222 20034222 A G MAP7D2 Missense_Mutation p.I545T 0.84 deleterious(0) unknown(0) TCGA-RC-A7SH-01 X 26157400 26157400 G A MAGEB18 Missense_Mutation p.E100K 0.94 tolerated(0.08) benign(0.033) TCGA-RC-A7SH-01 X 35820424 35820424 C T MAGEB16 Silent p.T37T 0.22 TCGA-RC-A7SH-01 X 54784679 54784679 T C ITIH6 Missense_Mutation p.M610V 0.88 tolerated(1) benign(0.003) TCGA-RC-A7SH-01 X 66931524 66931524 C A AR Silent p.A722A 0.12 TCGA-RC-A7SH-01 X 9677726 9677726 A G TBL1X Silent p.K455K 0.92 TCGA-RC-A7SK-01 10 122334705 122334705 G A PPAPDC1A Missense_Mutation p.E170K 0.10 tolerated(0.14) benign(0.227) TCGA-RC-A7SK-01 10 20568801 20568801 A G PLXDC2 3'UTR 0.30 TCGA-RC-A7SK-01 10 21435299 21435299 C G C10orf113 Missense_Mutation p.A47P 0.58 tolerated_low_confidence(0.28) benign(0.231) TCGA-RC-A7SK-01 10 28884889 28884889 T C WAC Missense_Mutation p.F280L 0.20 tolerated_low_confidence(0.51) benign(0.058) TCGA-RC-A7SK-01 10 51027418 51027418 C A PARG Missense_Mutation p.A482S 0.35 tolerated_low_confidence(0.45) benign(0.001) TCGA-RC-A7SK-01 10 53458228 53458228 C A CSTF2T Missense_Mutation p.G361V 0.14 deleterious(0) probably_damaging(0.997) TCGA-RC-A7SK-01 10 64148261 64148261 C G ZNF365 Missense_Mutation p.L284V 0.28 tolerated(0.3) benign(0.081) TCGA-RC-A7SK-01 10 88768173 88768173 C T RP11-96C23.10 3'Flank 0.14 TCGA-RC-A7SK-01 11 105804564 105804564 A T GRIA4 Missense_Mutation p.K721N 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-RC-A7SK-01 11 10613101 10613101 A G MRVI1 Missense_Mutation p.L745S 0.34 deleterious(0.02) probably_damaging(0.991) TCGA-RC-A7SK-01 11 107799382 107799382 C A RAB39A Missense_Mutation p.Q30K 0.27 deleterious(0.04) benign(0.007) TCGA-RC-A7SK-01 11 117301747 117301747 T C DSCAML1 Missense_Mutation p.K1853E 0.16 deleterious(0.04) probably_damaging(0.909) TCGA-RC-A7SK-01 11 118889521 118889521 G A TRAPPC4 Missense_Mutation p.V6M 0.18 deleterious(0) probably_damaging(0.993) TCGA-RC-A7SK-01 11 124487191 124487191 G T PANX3 Missense_Mutation p.A116S 0.35 tolerated(0.07) benign(0.304) TCGA-RC-A7SK-01 11 17191152 17191152 C T PIK3C2A Missense_Mutation p.R46K 0.21 tolerated_low_confidence(0.71) benign(0.001) TCGA-RC-A7SK-01 11 3381365 3381365 C T ZNF195 Silent p.E291E 0.19 TCGA-RC-A7SK-01 11 57948061 57948061 A G OR9Q1 3'UTR 0.11 TCGA-RC-A7SK-01 11 67119414 67119414 G T POLD4 3'UTR 0.30 TCGA-RC-A7SK-01 11 95560987 95560987 A C CEP57 Missense_Mutation p.Q308P 0.18 deleterious(0) probably_damaging(0.99) TCGA-RC-A7SK-01 12 101873452 101873452 T C SPIC Missense_Mutation p.Y64H 0.34 tolerated(0.33) benign(0.004) TCGA-RC-A7SK-01 12 10584707 10584707 A G KLRC2 Silent p.H194H 0.15 TCGA-RC-A7SK-01 12 112703691 112703696 TCATCC - HECTD4 In_Frame_Del p.E684_D685del 0.13 TCGA-RC-A7SK-01 12 118636888 118636888 T C TAOK3 Missense_Mutation p.I388V 0.23 tolerated(1) benign(0) TCGA-RC-A7SK-01 12 124229432 124229432 C A ATP6V0A2 Missense_Mutation p.D506E 0.43 tolerated(0.56) benign(0.004) TCGA-RC-A7SK-01 12 22610088 22610088 T A C2CD5 Silent p.T847T 0.17 TCGA-RC-A7SK-01 12 26647155 26647155 A G ITPR2 Silent p.N1767N 0.43 TCGA-RC-A7SK-01 12 49431342 49431342 A T KMT2D Missense_Mutation p.L3266H 0.20 probably_damaging(0.993) TCGA-RC-A7SK-01 12 53345925 53345925 T A KRT18 Missense_Mutation p.L324Q 0.43 deleterious(0.01) possibly_damaging(0.896) TCGA-RC-A7SK-01 12 57910031 57910031 A C MARS Missense_Mutation p.K823Q 0.52 tolerated(0.36) benign(0.001) TCGA-RC-A7SK-01 12 57910051 57910051 A C MARS Silent p.A829A 0.50 TCGA-RC-A7SK-01 12 67699601 67699602 - T CAND1 Frame_Shift_Ins p.L719Ffs*19 0.36 TCGA-RC-A7SK-01 12 76425490 76425490 A C PHLDA1 Missense_Mutation p.L11W 0.50 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-RC-A7SK-01 12 89992431 89992431 T C ATP2B1 Intron 0.11 TCGA-RC-A7SK-01 12 95451647 95451647 T C NR2C1 Silent p.Q184Q 0.27 TCGA-RC-A7SK-01 12 99638191 99638191 A G ANKS1B Missense_Mutation p.I783T 0.14 deleterious(0) probably_damaging(0.979) TCGA-RC-A7SK-01 12 99793570 99793570 A G ANKS1B Missense_Mutation p.I532T 0.19 deleterious(0) benign(0.205) TCGA-RC-A7SK-01 13 103271076 103271076 A G TPP2 Missense_Mutation p.N167S 0.11 tolerated(0.18) benign(0.002) TCGA-RC-A7SK-01 14 102463601 102463601 A C DYNC1H1 Missense_Mutation p.K1265T 0.35 probably_damaging(0.99) TCGA-RC-A7SK-01 14 23901921 23901921 C T MYH7 Silent p.R143R 0.33 TCGA-RC-A7SK-01 14 36041819 36041819 T C RALGAPA1 Missense_Mutation p.I1933V 0.32 deleterious(0.01) probably_damaging(0.976) TCGA-RC-A7SK-01 14 38273976 38273976 A G TTC6 Missense_Mutation p.Y1374C 0.16 deleterious(0) probably_damaging(0.992) TCGA-RC-A7SK-01 14 39722480 39722480 A G MIA2 3'UTR 0.28 TCGA-RC-A7SK-01 14 56078888 56078888 A G KTN1 Missense_Mutation p.Q41R 0.33 deleterious(0) possibly_damaging(0.783) TCGA-RC-A7SK-01 14 78198864 78198864 G A SNW1 Silent p.A285A 0.47 TCGA-RC-A7SK-01 14 89034417 89034417 G T ZC3H14 Silent p.V38V 0.21 TCGA-RC-A7SK-01 14 89034418 89034418 G T ZC3H14 Missense_Mutation p.A39S 0.21 deleterious(0) probably_damaging(0.999) TCGA-RC-A7SK-01 15 40321621 40321621 A G EIF2AK4 Missense_Mutation p.N1506S 0.30 tolerated(0.92) benign(0.015) TCGA-RC-A7SK-01 15 48808530 48808530 T C FBN1 Missense_Mutation p.M393V 0.31 benign(0) TCGA-RC-A7SK-01 15 99512764 99512764 C A PGPEP1L Silent p.V87V 0.38 TCGA-RC-A7SK-01 16 15931900 15931900 C A MYH11 Silent p.T70T 0.22 TCGA-RC-A7SK-01 16 56701964 56701964 G A MT1G 5'UTR 0.50 TCGA-RC-A7SK-01 16 67221359 67221359 C T EXOC3L1 Missense_Mutation p.G270E 0.29 deleterious(0) probably_damaging(0.996) TCGA-RC-A7SK-01 16 67267989 67267989 G T FHOD1 Silent p.L539L 0.37 TCGA-RC-A7SK-01 16 71772938 71772938 A C AP1G1 Missense_Mutation p.N728K 0.38 tolerated(0.88) benign(0.023) TCGA-RC-A7SK-01 16 83994227 83994227 C T OSGIN1 Silent p.A86A 0.56 TCGA-RC-A7SK-01 16 84230532 84230532 C T ADAD2 Silent p.G650G 0.26 TCGA-RC-A7SK-01 17 39017949 39017949 G C KRT12 Silent p.V483V 0.21 TCGA-RC-A7SK-01 17 42476641 42476641 T C GPATCH8 Missense_Mutation p.Y935C 0.17 tolerated(0.06) unknown(0) TCGA-RC-A7SK-01 17 45518054 45518054 A G EFCAB13 Missense_Mutation p.K966E 0.38 deleterious_low_confidence(0) benign(0.002) TCGA-RC-A7SK-01 17 48356566 48356566 A T TMEM92 Missense_Mutation p.K126M 0.15 tolerated(0.19) possibly_damaging(0.658) TCGA-RC-A7SK-01 17 61914891 61914891 C T SMARCD2 Missense_Mutation p.R104Q 0.43 tolerated(0.11) probably_damaging(0.978) TCGA-RC-A7SK-01 17 73643908 73643908 T A SMIM6 3'UTR 0.20 TCGA-RC-A7SK-01 17 7578410 7578410 T A TP53 Missense_Mutation p.R174W 0.64 deleterious(0) probably_damaging(0.997) TCGA-RC-A7SK-01 17 79663472 79663472 G T HGS Missense_Mutation p.E493D 0.56 tolerated(0.08) probably_damaging(0.982) TCGA-RC-A7SK-01 17 79663473 79663473 A T HGS Nonsense_Mutation p.K494* 0.50 TCGA-RC-A7SK-01 17 80046979 80046979 T C FASN Missense_Mutation p.S724G 0.16 tolerated(0.49) benign(0) TCGA-RC-A7SK-01 18 67997370 67997370 A T SOCS6 3'UTR 0.25 TCGA-RC-A7SK-01 19 11660620 11660620 G A CNN1 3'UTR 0.22 TCGA-RC-A7SK-01 19 13056794 13056794 A C RAD23A Missense_Mutation p.Q11P 0.44 deleterious(0.03) possibly_damaging(0.869) TCGA-RC-A7SK-01 19 13056800 13056800 A C RAD23A Missense_Mutation p.Q13P 0.45 deleterious(0) possibly_damaging(0.856) TCGA-RC-A7SK-01 19 18499150 18499150 C G GDF15 Missense_Mutation p.P111R 0.20 tolerated(0.13) benign(0.123) TCGA-RC-A7SK-01 19 22848119 22848119 G T ZNF492 3'UTR 0.22 TCGA-RC-A7SK-01 19 367179 367179 G A THEG Missense_Mutation p.R267W 0.29 deleterious(0) probably_damaging(0.999) TCGA-RC-A7SK-01 19 41704734 41704734 C A CYP2S1 Missense_Mutation p.L259M 0.18 deleterious(0) possibly_damaging(0.846) TCGA-RC-A7SK-01 19 50981193 50981193 C T EMC10 Missense_Mutation p.A41V 0.20 tolerated_low_confidence(0.46) unknown(0) TCGA-RC-A7SK-01 19 53762414 53762414 T A VN1R2 Nonsense_Mutation p.Y262* 0.34 TCGA-RC-A7SK-01 19 54554674 54554674 T A VSTM1 Silent p.S128S 0.41 TCGA-RC-A7SK-01 19 55143684 55143684 C A LILRB1 Silent p.V219V 0.33 TCGA-RC-A7SK-01 19 55143685 55143685 C A LILRB1 Missense_Mutation p.L220I 0.38 deleterious(0.03) benign(0.001) TCGA-RC-A7SK-01 19 58152694 58152694 T C ZNF211 Silent p.S345S 0.31 TCGA-RC-A7SK-01 19 58698311 58698311 C T ZNF274 Intron 0.17 TCGA-RC-A7SK-01 19 6190549 6190549 T C ACSBG2 Intron 0.30 TCGA-RC-A7SK-01 1 100542807 100542807 A G HIAT1 Silent p.A326A 0.27 TCGA-RC-A7SK-01 1 145365361 145365361 C G NBPF10 Missense_Mutation p.P3329R 0.21 probably_damaging(0.998) TCGA-RC-A7SK-01 1 151237944 151237944 G T PSMD4 Silent p.V171V 0.34 TCGA-RC-A7SK-01 1 153920974 153920974 G A CRTC2 Silent p.H607H 0.17 TCGA-RC-A7SK-01 1 156100406 156100406 A G LMNA Splice_Site p.X119_splice 0.28 TCGA-RC-A7SK-01 1 156616630 156616630 G A BCAN Silent p.A43A 0.16 TCGA-RC-A7SK-01 1 160456431 160456431 C A SLAMF6 3'UTR 0.12 TCGA-RC-A7SK-01 1 161494890 161494890 G C HSPA6 Missense_Mutation p.V148L 0.21 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-RC-A7SK-01 1 17085353 17085353 C T MST1L RNA 0.06 TCGA-RC-A7SK-01 1 173872971 173872971 T C SERPINC1 3'UTR 0.27 TCGA-RC-A7SK-01 1 175306706 175306707 - A TNR Frame_Shift_Ins p.L1164Ffs*6 0.23 TCGA-RC-A7SK-01 1 180471523 180471523 C G ACBD6 5'UTR 0.25 TCGA-RC-A7SK-01 1 204380351 204380351 C A PPP1R15B Missense_Mutation p.W63C 0.11 deleterious(0) probably_damaging(0.988) TCGA-RC-A7SK-01 1 207647181 207647181 C T CR2 Missense_Mutation p.L731F 0.30 tolerated(0.76) benign(0.111) TCGA-RC-A7SK-01 1 208219347 208219347 T G PLXNA2 Missense_Mutation p.N1124T 0.32 deleterious(0) probably_damaging(0.988) TCGA-RC-A7SK-01 1 211451497 211451497 C G RCOR3 Nonsense_Mutation p.Y185* 0.16 TCGA-RC-A7SK-01 1 236751283 236751283 T C HEATR1 Missense_Mutation p.I531V 0.16 tolerated(0.77) benign(0.002) TCGA-RC-A7SK-01 1 247014692 247014692 T C AHCTF1 Missense_Mutation p.N1548S 0.35 tolerated(0.66) benign(0.005) TCGA-RC-A7SK-01 1 29040743 29040743 T C GMEB1 Missense_Mutation p.S394P 0.26 deleterious(0.04) benign(0.419) TCGA-RC-A7SK-01 1 38185617 38185617 A G EPHA10 Silent p.F842F 0.56 TCGA-RC-A7SK-01 1 55144944 55144944 A T MROH7 Silent p.G686G 0.25 TCGA-RC-A7SK-01 1 7837247 7837247 G A VAMP3 Missense_Mutation p.D34N 0.21 deleterious_low_confidence(0.02) benign(0.088) TCGA-RC-A7SK-01 20 18165423 18165423 A G CSRP2BP Missense_Mutation p.Y721C 0.15 deleterious(0) probably_damaging(1) TCGA-RC-A7SK-01 20 3171873 3171873 A T DDRGK1 Missense_Mutation p.N247K 0.14 deleterious(0.03) benign(0.027) TCGA-RC-A7SK-01 20 32891086 32891086 A T AHCY 5'UTR 0.31 TCGA-RC-A7SK-01 21 35134244 35134244 A G ITSN1 Missense_Mutation p.I248V 0.05 tolerated(0.34) unknown(0) TCGA-RC-A7SK-01 21 35470028 35470028 T A SLC5A3 3'UTR 0.22 TCGA-RC-A7SK-01 21 47744106 47744106 C A PCNT 5'UTR 0.36 TCGA-RC-A7SK-01 22 23950941 23950941 C A C22orf43 3'UTR 0.10 TCGA-RC-A7SK-01 22 28378235 28378235 T C TTC28 Missense_Mutation p.R2474G 0.09 deleterious_low_confidence(0.01) benign(0.135) TCGA-RC-A7SK-01 22 42093209 42093209 G T C22orf46 3'UTR 0.27 TCGA-RC-A7SK-01 22 46671305 46671305 A G TTC38 Missense_Mutation p.I176V 0.36 tolerated(0.79) benign(0.005) TCGA-RC-A7SK-01 2 125192135 125192135 A T CNTNAP5 Nonsense_Mutation p.K202* 0.42 TCGA-RC-A7SK-01 2 132020969 132020969 A C POTEE Missense_Mutation p.E647D 0.47 deleterious_low_confidence(0) possibly_damaging(0.585) TCGA-RC-A7SK-01 2 15523423 15523423 C T NBAS Silent p.E1092E 0.17 TCGA-RC-A7SK-01 2 160808016 160808016 A T PLA2R1 Silent p.T1125T 0.42 TCGA-RC-A7SK-01 2 167319005 167319005 C G SCN7A Missense_Mutation p.G326A 0.54 deleterious(0) probably_damaging(0.984) TCGA-RC-A7SK-01 2 177054752 177054752 A G HOXD1 Missense_Mutation p.E290G 0.08 deleterious(0) probably_damaging(0.948) TCGA-RC-A7SK-01 2 179343059 179343059 T C FKBP7 Silent p.L56L 0.07 TCGA-RC-A7SK-01 2 190924808 190924808 C T MSTN Missense_Mutation p.G243R 0.58 tolerated(0.38) benign(0.003) TCGA-RC-A7SK-01 2 220333678 220333678 C T SPEG Silent p.L1133L 0.48 TCGA-RC-A7SK-01 2 231936937 231936937 G T PSMD1 Missense_Mutation p.S230I 0.13 deleterious(0) possibly_damaging(0.536) TCGA-RC-A7SK-01 2 231936939 231936939 G T PSMD1 Missense_Mutation p.D231Y 0.15 deleterious(0.01) possibly_damaging(0.805) TCGA-RC-A7SK-01 2 32891709 32891709 G T TTC27 Missense_Mutation p.L271F 0.21 deleterious(0) probably_damaging(0.994) TCGA-RC-A7SK-01 2 43922295 43922295 A G PLEKHH2 Missense_Mutation p.N145S 0.10 deleterious(0.01) benign(0.14) TCGA-RC-A7SK-01 2 48027047 48027047 A G MSH6 Missense_Mutation p.Y642C 0.48 deleterious(0) probably_damaging(0.999) TCGA-RC-A7SK-01 2 71827927 71827927 G A DYSF Silent p.P1284P 0.25 TCGA-RC-A7SK-01 2 84844030 84844030 A T DNAH6 Missense_Mutation p.N1166Y 0.38 deleterious(0.01) probably_damaging(0.917) TCGA-RC-A7SK-01 2 86333149 86333149 C A POLR1A 5'UTR 0.50 TCGA-RC-A7SK-01 2 88857133 88857133 G C EIF2AK3 3'UTR 0.45 TCGA-RC-A7SK-01 3 108347953 108347953 T C DZIP3 Missense_Mutation p.I209T 0.18 deleterious(0.01) benign(0.005) TCGA-RC-A7SK-01 3 121641941 121641941 C A SLC15A2 Missense_Mutation p.P308T 0.20 deleterious(0) probably_damaging(0.965) TCGA-RC-A7SK-01 3 12195209 12195209 T C TIMP4 Missense_Mutation p.T161A 0.28 deleterious(0.04) benign(0.312) TCGA-RC-A7SK-01 3 124732258 124732258 G T HEG1 Missense_Mutation p.S722Y 0.33 deleterious(0) probably_damaging(0.963) TCGA-RC-A7SK-01 3 127702969 127702969 T C KBTBD12 Silent p.L574L 0.19 TCGA-RC-A7SK-01 3 180704791 180704791 T C DNAJC19 Missense_Mutation p.Y50C 0.21 deleterious(0.04) possibly_damaging(0.733) TCGA-RC-A7SK-01 3 39230338 39230338 A G XIRP1 Missense_Mutation p.L200P 0.43 deleterious(0) probably_damaging(1) TCGA-RC-A7SK-01 3 47098371 47098371 T C SETD2 Silent p.T2301T 0.27 TCGA-RC-A7SK-01 3 9934999 9934999 T C JAGN1 Missense_Mutation p.Y164H 0.35 deleterious(0) probably_damaging(0.995) TCGA-RC-A7SK-01 4 103747665 103747665 T C UBE2D3 Intron 0.32 TCGA-RC-A7SK-01 4 119461401 119461401 C A CEP170P1 RNA 0.33 TCGA-RC-A7SK-01 4 139965791 139965791 A T CCRN4L Splice_Site p.X154_splice 0.56 TCGA-RC-A7SK-01 4 140299908 140299908 A G NAA15 Splice_Site p.X686_splice 0.32 TCGA-RC-A7SK-01 4 148463734 148463734 C T EDNRA Silent p.N416N 0.31 TCGA-RC-A7SK-01 4 15688494 15688494 A G FAM200B 5'UTR 0.24 TCGA-RC-A7SK-01 4 177071048 177071048 C A WDR17 Missense_Mutation p.T687N 0.34 tolerated(0.22) possibly_damaging(0.557) TCGA-RC-A7SK-01 4 2965787 2965787 G T GRK4 5'UTR 0.17 TCGA-RC-A7SK-01 4 3015469 3015470 - A GRK4 Frame_Shift_Ins p.R222Kfs*8 0.58 TCGA-RC-A7SK-01 4 39448206 39448206 G T KLB Silent p.L620L 0.71 TCGA-RC-A7SK-01 4 6862633 6862633 A G KIAA0232 Missense_Mutation p.Y175C 0.12 deleterious(0) probably_damaging(0.999) TCGA-RC-A7SK-01 4 75312480 75312480 T A AREG Silent p.I97I 0.32 TCGA-RC-A7SK-01 4 75482235 75482235 T A AREGB Silent p.I97I 0.38 TCGA-RC-A7SK-01 4 77817982 77817982 C G SOWAHB Missense_Mutation p.E341Q 0.35 tolerated(0.07) benign(0.403) TCGA-RC-A7SK-01 4 80246710 80246710 A G NAA11 Missense_Mutation p.S108P 0.32 deleterious(0) probably_damaging(0.981) TCGA-RC-A7SK-01 4 88106860 88106860 G C KLHL8 Missense_Mutation p.A103G 0.29 deleterious(0.03) benign(0.13) TCGA-RC-A7SK-01 5 133997259 133997259 A G SEC24A Missense_Mutation p.N183S 0.24 deleterious(0.01) benign(0.101) TCGA-RC-A7SK-01 5 134039534 134039535 - T SEC24A Frame_Shift_Ins p.Y785Lfs*13 0.25 TCGA-RC-A7SK-01 5 140209555 140209555 T C PCDHA6 Missense_Mutation p.Y627H 0.32 deleterious_low_confidence(0.03) possibly_damaging(0.478) TCGA-RC-A7SK-01 5 140222076 140222076 G A PCDHA8 Missense_Mutation p.M390I 0.45 tolerated_low_confidence(0.05) benign(0) TCGA-RC-A7SK-01 5 140626274 140626274 G T PCDHB15 Silent p.G376G 0.09 TCGA-RC-A7SK-01 5 158588365 158588365 C T RNF145 Missense_Mutation p.R542H 0.40 deleterious(0) probably_damaging(1) TCGA-RC-A7SK-01 5 159797621 159797621 C A C1QTNF2 Silent p.P8P 0.17 TCGA-RC-A7SK-01 5 159992727 159992727 T C ATP10B Silent p.T1373T 0.43 TCGA-RC-A7SK-01 5 176793252 176793252 A T RGS14 Missense_Mutation p.S48C 0.22 deleterious(0.02) possibly_damaging(0.873) TCGA-RC-A7SK-01 5 180048202 180048202 C T FLT4 Missense_Mutation p.V691M 0.43 deleterious(0.02) probably_damaging(0.989) TCGA-RC-A7SK-01 5 34688182 34688182 A G RAI14 5'UTR 0.12 TCGA-RC-A7SK-01 5 39364569 39364569 T A C9 5'UTR 0.33 TCGA-RC-A7SK-01 5 5462475 5462475 G T KIAA0947 Missense_Mutation p.V1010L 0.39 tolerated(0.81) benign(0.001) TCGA-RC-A7SK-01 5 89990498 89990498 A G GPR98 Missense_Mutation p.E2642G 0.07 benign(0.001) TCGA-RC-A7SK-01 5 96116195 96116195 A G ERAP1 Missense_Mutation p.S868P 0.42 deleterious(0) probably_damaging(0.995) TCGA-RC-A7SK-01 6 10726176 10726176 G T TMEM14C Missense_Mutation p.G45V 0.15 deleterious(0) probably_damaging(0.982) TCGA-RC-A7SK-01 6 108372287 108372287 A G OSTM1 Missense_Mutation p.L244P 0.14 tolerated(0.09) possibly_damaging(0.567) TCGA-RC-A7SK-01 6 132910065 132910066 AG C TAAR5 Frame_Shift_Del p.L254Gfs*17 0.29 TCGA-RC-A7SK-01 6 142623440 142623440 A C GPR126 5'UTR 0.11 TCGA-RC-A7SK-01 6 165801928 165801928 C A PDE10A Silent p.L557L 0.62 TCGA-RC-A7SK-01 6 168445527 168445527 G T KIF25 Missense_Mutation p.V336L 0.46 tolerated(0.1) possibly_damaging(0.524) TCGA-RC-A7SK-01 6 24205315 24205315 T G DCDC2 Missense_Mutation p.K313T 0.12 deleterious(0.03) possibly_damaging(0.632) TCGA-RC-A7SK-01 6 28217606 28217606 C G ZKSCAN4 Missense_Mutation p.V144L 0.19 tolerated(0.14) benign(0.005) TCGA-RC-A7SK-01 6 29323799 29323799 A T OR5V1 Silent p.P58P 0.31 TCGA-RC-A7SK-01 6 29430101 29430101 C A OR2H1 Silent p.L185L 0.18 TCGA-RC-A7SK-01 6 30657906 30657906 T G NRM Missense_Mutation p.E83A 0.22 tolerated(0.69) benign(0.038) TCGA-RC-A7SK-01 6 32012931 32012931 C A TNXB Silent p.T22T 0.06 TCGA-RC-A7SK-01 6 42975740 42975740 T C PPP2R5D Missense_Mutation p.I265T 0.24 deleterious(0) probably_damaging(0.998) TCGA-RC-A7SK-01 6 49668498 49668498 C G CRISP2 Splice_Site p.X23_splice 0.14 TCGA-RC-A7SK-01 6 51910819 51910819 A T PKHD1 Missense_Mutation p.L859M 0.08 deleterious(0) probably_damaging(1) TCGA-RC-A7SK-01 6 70408942 70408944 AAG - LMBRD1 Nonsense_Mutation p.Y443_L444delins* 0.33 TCGA-RC-A7SK-01 6 97246343 97246343 A T GPR63 3'UTR 0.09 TCGA-RC-A7SK-01 7 102412867 102412867 T G FAM185A Missense_Mutation p.L269V 0.18 tolerated(0.49) benign(0.059) TCGA-RC-A7SK-01 7 102524745 102524745 G T FBXL13 Silent p.G341G 0.09 TCGA-RC-A7SK-01 7 116339203 116339203 G T MET Missense_Mutation p.S22I 0.07 tolerated(0.15) benign(0.265) TCGA-RC-A7SK-01 7 20691108 20691108 G T ABCB5 Silent p.V466V 0.42 TCGA-RC-A7SK-01 7 20691109 20691109 G T ABCB5 Missense_Mutation p.V467F 0.41 deleterious(0) probably_damaging(0.998) TCGA-RC-A7SK-01 7 22769448 22769448 T G IL6 Intron 0.21 TCGA-RC-A7SK-01 7 34867130 34867130 C T NPSR1 Missense_Mutation p.A199V 0.28 tolerated(0.63) possibly_damaging(0.872) TCGA-RC-A7SK-01 7 43982358 43982358 C T UBE2D4 Intron 0.42 TCGA-RC-A7SK-01 7 44578553 44578553 A G NPC1L1 Silent p.S481S 0.46 TCGA-RC-A7SK-01 7 45108142 45108142 G T CCM2 Missense_Mutation p.E212D 0.27 tolerated(0.14) benign(0.036) TCGA-RC-A7SK-01 7 86493597 86493597 G T GRM3 Splice_Site p.X856_splice 0.20 TCGA-RC-A7SK-01 7 92122372 92122372 A C PEX1 Missense_Mutation p.H1034Q 0.15 tolerated(0.64) benign(0.002) TCGA-RC-A7SK-01 7 92122387 92122387 A G PEX1 Silent p.D1029D 0.14 TCGA-RC-A7SK-01 7 94139422 94139422 G T CASD1 Missense_Mutation p.G9V 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-RC-A7SK-01 8 110283345 110283345 A T NUDCD1 Missense_Mutation p.D396E 0.09 tolerated(0.62) benign(0.001) TCGA-RC-A7SK-01 8 119936661 119936661 T G TNFRSF11B Missense_Mutation p.L386F 0.08 tolerated(0.06) benign(0.086) TCGA-RC-A7SK-01 8 119936683 119936683 T G TNFRSF11B Missense_Mutation p.K379T 0.07 deleterious(0) benign(0.064) TCGA-RC-A7SK-01 8 119936888 119936888 C G TNFRSF11B Missense_Mutation p.D311H 0.06 deleterious(0) probably_damaging(0.941) TCGA-RC-A7SK-01 8 124693472 124693472 G C ANXA13 3'UTR 0.07 TCGA-RC-A7SK-01 8 27324790 27324790 G T CHRNA2 Silent p.V135V 0.27 TCGA-RC-A7SK-01 8 31498106 31498106 C G NRG1 Missense_Mutation p.D55E 0.38 deleterious(0.01) benign(0.14) TCGA-RC-A7SK-01 8 61653905 61653905 A G CHD7 5'UTR 0.43 TCGA-RC-A7SK-01 8 93023275 93023275 T A RUNX1T1 Missense_Mutation p.E182D 0.05 tolerated(0.13) benign(0.042) TCGA-RC-A7SK-01 9 117808755 117808755 C T TNC Missense_Mutation p.E1687K 0.78 tolerated(0.1) benign(0.013) TCGA-RC-A7SK-01 9 135277159 135277159 A T TTF1 Silent p.P350P 0.69 TCGA-RC-A7SK-01 9 36677291 36677293 ACA CC MELK Frame_Shift_Del p.Y638Sfs*4 0.46 TCGA-RC-A7SK-01 9 96082686 96082686 C T WNK2 3'Flank 0.43 TCGA-RC-A7SK-01 X 50037976 50037976 T A CCNB3 Missense_Mutation p.N106K 0.48 deleterious(0.02) benign(0.067) TCGA-RC-A7SK-01 Y 4968005 4968005 A G PCDH11Y Missense_Mutation p.S796G 0.65 tolerated(0.23) benign(0.209) TCGA-RG-A7D4-01 10 105183390 105183390 A T PDCD11 Missense_Mutation p.D913V 0.12 deleterious(0.03) benign(0.091) TCGA-RG-A7D4-01 10 105932273 105932273 T G WDR96 Missense_Mutation p.E827D 0.28 tolerated(0.13) benign(0.065) TCGA-RG-A7D4-01 10 115349517 115349517 C T NRAP Missense_Mutation p.G1666S 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-RG-A7D4-01 10 15255230 15255230 G A FAM171A1 Missense_Mutation p.T786M 0.11 deleterious(0) probably_damaging(0.985) TCGA-RG-A7D4-01 10 63976948 63976948 G - RTKN2 Frame_Shift_Del p.L317Sfs*19 0.24 TCGA-RG-A7D4-01 10 73767898 73767898 G A CHST3 Missense_Mutation p.R370H 0.08 deleterious(0) probably_damaging(1) TCGA-RG-A7D4-01 10 94376541 94376541 G A KIF11 Silent p.L360L 0.10 TCGA-RG-A7D4-01 11 10785358 10785358 G A CTR9 Missense_Mutation p.E376K 0.12 deleterious(0) probably_damaging(0.959) TCGA-RG-A7D4-01 11 108464302 108464302 C T EXPH5 5'UTR 0.06 TCGA-RG-A7D4-01 11 116728796 116728796 G A SIK3 Missense_Mutation p.H1023Y 0.27 deleterious_low_confidence(0.03) benign(0.192) TCGA-RG-A7D4-01 11 124294034 124294034 A T OR8B4 Missense_Mutation p.I245N 0.26 deleterious_low_confidence(0) benign(0.327) TCGA-RG-A7D4-01 11 134027961 134027961 G A NCAPD3 Missense_Mutation p.P1346S 0.29 tolerated(0.29) benign(0.002) TCGA-RG-A7D4-01 11 45671573 45671573 G A CHST1 Missense_Mutation p.R301C 0.28 deleterious(0) probably_damaging(1) TCGA-RG-A7D4-01 11 51411561 51411561 G A OR4A5 Silent p.L279L 0.18 TCGA-RG-A7D4-01 11 62292058 62292058 T C AHNAK Silent p.K3277K 0.07 TCGA-RG-A7D4-01 11 64055851 64055851 G A GPR137 Missense_Mutation p.V333I 0.21 deleterious(0.05) benign(0.279) TCGA-RG-A7D4-01 11 6417394 6417394 C T APBB1 Missense_Mutation p.R573H 0.07 deleterious(0.01) possibly_damaging(0.719) TCGA-RG-A7D4-01 11 64802558 64802558 G T SNX15 Missense_Mutation p.V134L 0.08 tolerated(0.51) benign(0.001) TCGA-RG-A7D4-01 11 65422089 65422089 G T RELA Silent p.S472S 0.26 TCGA-RG-A7D4-01 11 65746561 65746561 T C SART1 3'UTR 0.19 TCGA-RG-A7D4-01 11 7063785 7063785 A G NLRP14 Silent p.P176P 0.23 TCGA-RG-A7D4-01 12 104157269 104157269 G C STAB2 Splice_Site p.X2497_splice 0.28 TCGA-RG-A7D4-01 12 129569203 129569203 C A TMEM132D Missense_Mutation p.M496I 0.20 tolerated(0.16) benign(0.034) TCGA-RG-A7D4-01 12 41422971 41422971 G A CNTN1 Missense_Mutation p.R977H 0.29 deleterious(0) probably_damaging(0.999) TCGA-RG-A7D4-01 12 70949887 70949887 A G PTPRB Missense_Mutation p.S1586P 0.07 deleterious(0) probably_damaging(0.997) TCGA-RG-A7D4-01 12 7295867 7295867 A G CLSTN3 Missense_Mutation p.T603A 0.42 deleterious(0.01) possibly_damaging(0.795) TCGA-RG-A7D4-01 12 81747020 81747020 A T PPFIA2 Missense_Mutation p.D624E 0.34 tolerated(0.28) benign(0.043) TCGA-RG-A7D4-01 12 9906144 9906144 T G CD69 Missense_Mutation p.N178T 0.12 tolerated(0.28) benign(0.012) TCGA-RG-A7D4-01 14 106586179 106586179 G C IGHV3-13 Missense_Mutation p.N102K 0.30 deleterious_low_confidence(0.02) benign(0.176) TCGA-RG-A7D4-01 14 20585954 20585954 C A OR4K17 Missense_Mutation p.T130N 0.20 deleterious(0) probably_damaging(0.929) TCGA-RG-A7D4-01 14 22592189 22592189 C T TRAV26-1 Silent p.L92L 0.44 TCGA-RG-A7D4-01 14 32030678 32030678 T C NUBPL Silent p.G11G 0.17 TCGA-RG-A7D4-01 14 51233078 51233078 G T NIN Missense_Mutation p.L528M 0.16 deleterious(0.01) possibly_damaging(0.499) TCGA-RG-A7D4-01 14 51233079 51233079 G T NIN Missense_Mutation p.F527L 0.16 tolerated(0.26) probably_damaging(0.99) TCGA-RG-A7D4-01 14 52781678 52781678 A G PTGER2 Missense_Mutation p.I138V 0.24 deleterious(0.01) benign(0.426) TCGA-RG-A7D4-01 15 33825515 33825515 C A RYR3 Missense_Mutation p.L120I 0.24 probably_damaging(0.971) TCGA-RG-A7D4-01 15 43621087 43621087 C A LCMT2 Missense_Mutation p.R534L 0.22 deleterious(0.02) probably_damaging(1) TCGA-RG-A7D4-01 15 52652277 52652277 T C MYO5A Missense_Mutation p.H1104R 0.24 tolerated(0.52) benign(0.001) TCGA-RG-A7D4-01 16 84118684 84118684 C G MBTPS1 Missense_Mutation p.G397A 0.10 tolerated(0.41) benign(0.05) TCGA-RG-A7D4-01 17 34245278 34245278 G A RDM1 3'UTR 0.24 TCGA-RG-A7D4-01 17 4058038 4058038 G A CYB5D2 Silent p.A154A 0.37 TCGA-RG-A7D4-01 17 53158439 53158439 A G STXBP4 Missense_Mutation p.T462A 0.36 tolerated(0.5) benign(0.013) TCGA-RG-A7D4-01 17 58260713 58260713 C A USP32 Missense_Mutation p.L1312F 0.52 deleterious(0) probably_damaging(0.995) TCGA-RG-A7D4-01 17 7577114 7577114 C T TP53 Missense_Mutation p.C275Y 0.29 deleterious(0) probably_damaging(0.994) TCGA-RG-A7D4-01 17 7851880 7851898 GGGGGGCTCTGCCTGCTGA - CNTROB Frame_Shift_Del p.G820Ifs*6 0.32 TCGA-RG-A7D4-01 18 3134722 3134722 C A MYOM1 Silent p.G770G 0.44 TCGA-RG-A7D4-01 18 77896513 77896513 A G ADNP2 Missense_Mutation p.I1073V 0.07 tolerated(0.65) benign(0.006) TCGA-RG-A7D4-01 19 57643202 57643202 G T USP29 3'UTR 0.14 TCGA-RG-A7D4-01 19 746557 746557 A G PALM Missense_Mutation p.M303V 0.39 deleterious(0) possibly_damaging(0.861) TCGA-RG-A7D4-01 1 114442411 114442411 T C AP4B1 Intron 0.35 TCGA-RG-A7D4-01 1 116574033 116574033 A C SLC22A15 Missense_Mutation p.S259R 0.21 tolerated(0.36) benign(0.004) TCGA-RG-A7D4-01 1 152279556 152279556 G T FLG Silent p.G2602G 0.36 TCGA-RG-A7D4-01 1 152760020 152760020 A G LCE1E Missense_Mutation p.H82R 0.46 tolerated_low_confidence(0.78) unknown(0) TCGA-RG-A7D4-01 1 157516904 157516904 C T FCRL5 Missense_Mutation p.G46R 0.06 tolerated(0.07) benign(0.411) TCGA-RG-A7D4-01 1 159778188 159778188 A C FCRL6 Silent p.P91P 0.44 TCGA-RG-A7D4-01 1 204192627 204192627 C A PLEKHA6 Missense_Mutation p.A1040S 0.08 tolerated_low_confidence(0.09) benign(0.216) TCGA-RG-A7D4-01 1 215808006 215808006 C A USH2A Missense_Mutation p.R5031L 0.11 benign(0.019) TCGA-RG-A7D4-01 1 236193033 236193033 G A NID1 Nonsense_Mutation p.Q519* 0.42 TCGA-RG-A7D4-01 1 26694244 26694244 A G ZNF683 Silent p.H53H 0.24 TCGA-RG-A7D4-01 1 31438867 31438867 G A PUM1 Missense_Mutation p.A683V 0.11 tolerated(0.09) possibly_damaging(0.772) TCGA-RG-A7D4-01 1 63294791 63294791 G T ATG4C Missense_Mutation p.V293F 0.24 deleterious(0) benign(0.084) TCGA-RG-A7D4-01 20 47864862 47864862 T C ZNFX1 Missense_Mutation p.M1567V 0.48 tolerated(0.58) benign(0) TCGA-RG-A7D4-01 21 38997385 38997385 C T KCNJ6 3'UTR 0.15 TCGA-RG-A7D4-01 22 23040653 23040653 G A IGLV2-23 Missense_Mutation p.G34E 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.529) TCGA-RG-A7D4-01 22 32234735 32234735 C T DEPDC5 Missense_Mutation p.L798F 0.35 deleterious(0) probably_damaging(0.955) TCGA-RG-A7D4-01 22 38978277 38978277 T C FAM227A 3'Flank 0.21 TCGA-RG-A7D4-01 22 41075734 41075734 G T MCHR1 Silent p.S95S 0.33 TCGA-RG-A7D4-01 22 44893693 44893693 T A LDOC1L Splice_Site 0.14 TCGA-RG-A7D4-01 22 46656728 46656728 A G PKDREJ Missense_Mutation p.F831S 0.05 deleterious(0.02) benign(0.261) TCGA-RG-A7D4-01 2 108487761 108487761 C G RGPD4 Missense_Mutation p.R1101G 0.17 deleterious(0) probably_damaging(0.999) TCGA-RG-A7D4-01 2 179427137 179427137 C T TTN Missense_Mutation p.E27908K 0.26 TCGA-RG-A7D4-01 2 190922105 190922105 G C MSTN Missense_Mutation p.A336G 0.19 deleterious(0.01) benign(0.01) TCGA-RG-A7D4-01 2 202436741 202436741 T C ALS2CR11 Silent p.L252L 0.26 TCGA-RG-A7D4-01 2 206581088 206581088 C A NRP2 Silent p.I141I 0.29 TCGA-RG-A7D4-01 2 209218741 209218741 A G PIKFYVE Silent p.L1988L 0.24 TCGA-RG-A7D4-01 2 211421331 211421331 C T CPS1 Intron 0.26 TCGA-RG-A7D4-01 2 216226048 216226048 C T FN1 3'UTR 0.30 TCGA-RG-A7D4-01 2 223163413 223163413 G T PAX3 5'UTR 0.25 TCGA-RG-A7D4-01 2 234875362 234875362 C T TRPM8 Missense_Mutation p.A663V 0.31 deleterious(0) possibly_damaging(0.464) TCGA-RG-A7D4-01 2 27372096 27372096 G A TCF23 Missense_Mutation p.R32K 0.05 tolerated(0.16) benign(0.013) TCGA-RG-A7D4-01 2 64779926 64779926 T G AFTPH Missense_Mutation p.S440A 0.08 deleterious(0.02) benign(0.09) TCGA-RG-A7D4-01 2 70188307 70188356 AGGCCTTCAGGAGGGCCTCTTTCACAGTCCCATAGTCTCCCTGGTCCTGG - ASPRV1 Frame_Shift_Del p.Q156Wfs*22 0.43 TCGA-RG-A7D4-01 2 85554158 85554158 C T TGOLN2 Missense_Mutation p.D233N 0.11 tolerated(0.13) probably_damaging(0.981) TCGA-RG-A7D4-01 2 97017638 97017638 A G NCAPH Missense_Mutation p.T264A 0.23 tolerated(0.31) benign(0.292) TCGA-RG-A7D4-01 3 112648003 112648003 G A CD200R1 Intron 0.12 TCGA-RG-A7D4-01 3 11858718 11858718 A G TAMM41 Missense_Mutation p.I219T 0.23 deleterious(0) benign(0.219) TCGA-RG-A7D4-01 3 122128719 122128723 TTATG - FAM162A 3'UTR 0.27 TCGA-RG-A7D4-01 3 128292489 128292489 G A C3orf27 Silent p.R28R 0.21 TCGA-RG-A7D4-01 3 141884418 141884418 C A GK5 3'UTR 0.10 TCGA-RG-A7D4-01 3 195953959 195953959 G A SLC51A Missense_Mutation p.R86Q 0.09 tolerated(0.06) benign(0.107) TCGA-RG-A7D4-01 3 38159367 38159367 G A DLEC1 Missense_Mutation p.R1519Q 0.23 tolerated(0.06) benign(0.244) TCGA-RG-A7D4-01 3 41266136 41266136 T C CTNNB1 Missense_Mutation p.S45P 0.37 deleterious(0) probably_damaging(0.939) TCGA-RG-A7D4-01 4 100232814 100232814 C T ADH1B Splice_Site p.X277_splice 0.11 TCGA-RG-A7D4-01 4 114275909 114275909 A G ANK2 Silent p.T2045T 0.27 TCGA-RG-A7D4-01 4 126241701 126241701 G T FAT4 Missense_Mutation p.D1379Y 0.22 probably_damaging(1) TCGA-RG-A7D4-01 4 126373179 126373179 T C FAT4 Missense_Mutation p.S3670P 0.09 benign(0.355) TCGA-RG-A7D4-01 4 138450819 138450819 G C PCDH18 Missense_Mutation p.I808M 0.24 tolerated(0.11) probably_damaging(0.943) TCGA-RG-A7D4-01 4 24531241 24531241 T A DHX15 Silent p.T751T 0.08 TCGA-RG-A7D4-01 4 70504723 70504723 C T UGT2A2 Silent p.Q212Q 0.12 TCGA-RG-A7D4-01 4 79158773 79158773 T C FRAS1 Splice_Site p.X72_splice 0.15 TCGA-RG-A7D4-01 5 13759054 13759054 G T DNAH5 Silent p.A3440A 0.04 TCGA-RG-A7D4-01 5 140737153 140737153 G T PCDHGA4 Missense_Mutation p.D796Y 0.34 deleterious_low_confidence(0.02) benign(0.052) TCGA-RG-A7D4-01 5 168123358 168123358 G A SLIT3 Silent p.N1007N 0.43 TCGA-RG-A7D4-01 5 169535273 169535273 G A FOXI1 Silent p.E265E 0.11 TCGA-RG-A7D4-01 5 169689689 169689689 T G LCP2 Missense_Mutation p.E292D 0.34 tolerated(0.69) benign(0.009) TCGA-RG-A7D4-01 5 38409153 38409153 C T EGFLAM Silent p.H432H 0.22 TCGA-RG-A7D4-01 5 74973679 74973679 T G POC5 Missense_Mutation p.I502L 0.28 tolerated(0.07) possibly_damaging(0.527) TCGA-RG-A7D4-01 5 89979611 89979611 C T GPR98 Missense_Mutation p.S1958F 0.35 probably_damaging(0.962) TCGA-RG-A7D4-01 5 94022288 94022288 A G ANKRD32 Silent p.S662S 0.21 TCGA-RG-A7D4-01 6 106552731 106552731 C T PRDM1 Silent p.S232S 0.11 TCGA-RG-A7D4-01 6 111732714 111732714 T C REV3L Missense_Mutation p.I125V 0.24 deleterious(0.04) benign(0.173) TCGA-RG-A7D4-01 6 138619874 138619874 C T KIAA1244 Silent p.F1260F 0.08 TCGA-RG-A7D4-01 6 167550515 167550515 G A CCR6 Missense_Mutation p.C266Y 0.19 deleterious(0.01) possibly_damaging(0.781) TCGA-RG-A7D4-01 6 27278073 27278073 G T POM121L2 Missense_Mutation p.T626N 0.05 deleterious(0.03) probably_damaging(0.981) TCGA-RG-A7D4-01 6 35773531 35773531 G A LHFPL5 Missense_Mutation p.M28I 0.32 deleterious(0) benign(0.238) TCGA-RG-A7D4-01 6 41029150 41029150 A G APOBEC2 Missense_Mutation p.Y72C 0.05 deleterious(0) probably_damaging(1) TCGA-RG-A7D4-01 6 73935081 73935081 G T KHDC1L Silent p.P17P 0.30 TCGA-RG-A7D4-01 6 73935082 73935082 G T KHDC1L Missense_Mutation p.P17H 0.29 deleterious(0) probably_damaging(0.996) TCGA-RG-A7D4-01 7 90042587 90042591 CAAAT - CLDN12 Frame_Shift_Del p.K200Ffs*33 0.13 TCGA-RG-A7D4-01 8 104427069 104427069 C T SLC25A32 Missense_Mutation p.G33S 0.58 deleterious(0) probably_damaging(0.989) TCGA-RG-A7D4-01 8 11167038 11167038 A T MTMR9 Missense_Mutation p.Y271F 0.34 tolerated(0.7) benign(0.001) TCGA-RG-A7D4-01 8 48794656 48794656 C T PRKDC Silent p.V1592V 0.17 TCGA-RG-A7D4-01 8 69020369 69020369 C T PREX2 Missense_Mutation p.A914V 0.06 tolerated(1) benign(0.397) TCGA-RG-A7D4-01 8 79598833 79598833 T C ZC2HC1A Silent p.S114S 0.13 TCGA-RG-A7D4-01 8 91967871 91967871 C G NECAB1 3'UTR 0.52 TCGA-RG-A7D4-01 9 130242226 130242226 C T LRSAM1 Missense_Mutation p.R338W 0.08 deleterious(0.01) probably_damaging(0.955) TCGA-RG-A7D4-01 9 137713941 137713941 A T COL5A1 Splice_Site p.X1519_splice 0.30 TCGA-RG-A7D4-01 9 18888005 18888005 G - ADAMTSL1 Frame_Shift_Del p.V1477Cfs*8 0.15 TCGA-RG-A7D4-01 9 21206860 21206860 G A IFNA10 Silent p.V79V 0.09 TCGA-RG-A7D4-01 9 34089528 34089528 A G DCAF12 Missense_Mutation p.L362P 0.42 deleterious(0) probably_damaging(0.937) TCGA-RG-A7D4-01 9 79820239 79820239 A G VPS13A Silent p.K66K 0.22 TCGA-RG-A7D4-01 9 84248984 84248984 T A TLE1 Intron 0.40 TCGA-RG-A7D4-01 X 120182071 120182071 C G GLUD2 Missense_Mutation p.P178R 0.56 deleterious(0) probably_damaging(1) TCGA-RG-A7D4-01 X 153692550 153692550 C T PLXNA3 Silent p.C574C 0.08 TCGA-RG-A7D4-01 X 3239233 3239233 G T MXRA5 Missense_Mutation p.T1498K 0.05 tolerated(0.06) benign(0.155) TCGA-T1-A6J8-01 10 103783452 103783452 T A C10orf76 Missense_Mutation p.I188L 0.25 tolerated(0.45) benign(0.002) TCGA-T1-A6J8-01 10 21875225 21875225 A T MLLT10 Missense_Mutation p.R81S 0.20 deleterious(0) benign(0.232) TCGA-T1-A6J8-01 10 45799382 45799382 G T OR13A1 Silent p.A163A 0.28 TCGA-T1-A6J8-01 10 50530973 50530973 T C C10orf71 Missense_Mutation p.V128A 0.39 deleterious(0.03) benign(0.297) TCGA-T1-A6J8-01 10 55583049 55583049 T C PCDH15 Silent p.Q1481Q 0.43 TCGA-T1-A6J8-01 11 102816423 102816423 C G MMP13 Missense_Mutation p.D423H 0.31 deleterious(0.04) possibly_damaging(0.6) TCGA-T1-A6J8-01 11 102816459 102816459 T C MMP13 Missense_Mutation p.I411V 0.32 tolerated(0.17) benign(0) TCGA-T1-A6J8-01 11 55594866 55594866 C A OR5L2 Missense_Mutation p.P58T 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-T1-A6J8-01 11 56949612 56949612 C T LRRC55 Missense_Mutation p.P82L 0.41 deleterious(0) probably_damaging(0.998) TCGA-T1-A6J8-01 11 66039304 66039304 A C RAB1B Silent p.S17S 0.38 TCGA-T1-A6J8-01 11 66475653 66475653 G A SPTBN2 Missense_Mutation p.R437W 0.21 deleterious(0) probably_damaging(0.999) TCGA-T1-A6J8-01 12 121416684 121416684 T C HNF1A Missense_Mutation p.L38P 0.34 tolerated_low_confidence(0.22) benign(0.018) TCGA-T1-A6J8-01 12 123498529 123498529 G A PITPNM2 Missense_Mutation p.P47S 0.45 deleterious(0.01) benign(0.153) TCGA-T1-A6J8-01 12 125561142 125561142 G T AACS Missense_Mutation p.A115S 0.38 deleterious(0.01) probably_damaging(0.96) TCGA-T1-A6J8-01 12 15739913 15739913 G C PTPRO Missense_Mutation p.S1113T 0.25 tolerated(0.26) possibly_damaging(0.844) TCGA-T1-A6J8-01 12 49488335 49488335 C T DHH 5'UTR 0.35 TCGA-T1-A6J8-01 12 5604082 5604082 C T NTF3 Silent p.L247L 0.61 TCGA-T1-A6J8-01 13 39586338 39586338 G T PROSER1 Missense_Mutation p.S865Y 0.39 deleterious(0) probably_damaging(0.913) TCGA-T1-A6J8-01 13 95858910 95858910 A T ABCC4 Missense_Mutation p.I346N 0.40 deleterious(0.01) benign(0.151) TCGA-T1-A6J8-01 14 105945934 105945934 G T CRIP2 Missense_Mutation p.G265C 0.41 deleterious(0) probably_damaging(0.98) TCGA-T1-A6J8-01 14 106757693 106757693 T A IGHV2-26 Missense_Mutation p.N105I 0.06 deleterious(0) benign(0.39) TCGA-T1-A6J8-01 14 56119582 56119582 A T KTN1 Missense_Mutation p.E873V 0.39 deleterious(0) possibly_damaging(0.628) TCGA-T1-A6J8-01 14 63784460 63784460 C A GPHB5 RNA 0.41 TCGA-T1-A6J8-01 14 69256313 69256313 G A ZFP36L1 Silent p.S318S 0.48 TCGA-T1-A6J8-01 14 77714715 77714715 G A TMEM63C Missense_Mutation p.A543T 0.37 deleterious(0) probably_damaging(0.997) TCGA-T1-A6J8-01 14 86089943 86089943 C T FLRT2 3'UTR 0.44 TCGA-T1-A6J8-01 14 86090096 86090096 G T FLRT2 3'UTR 0.45 TCGA-T1-A6J8-01 15 30000996 30000997 AA - TJP1 Frame_Shift_Del p.F1539* 0.27 TCGA-T1-A6J8-01 15 50596296 50596296 T C GABPB1 Missense_Mutation p.Y48C 0.33 deleterious(0.01) possibly_damaging(0.763) TCGA-T1-A6J8-01 15 52357167 52357167 A T MAPK6 Silent p.T712T 0.36 TCGA-T1-A6J8-01 15 54307530 54307530 A T UNC13C Silent p.V810V 0.41 TCGA-T1-A6J8-01 15 54307531 54307531 G T UNC13C Missense_Mutation p.V811L 0.42 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-T1-A6J8-01 15 57730244 57730244 G T CGNL1 Missense_Mutation p.G16V 0.42 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-T1-A6J8-01 15 63988457 63988457 T A HERC1 Nonsense_Mutation p.R1663* 0.42 TCGA-T1-A6J8-01 15 74919878 74919895 AGAGCTGTGAGGAGAAGT GGAGC CLK3 Splice_Site p.X453_splice 0.42 TCGA-T1-A6J8-01 15 77310567 77310567 A T PSTPIP1 Missense_Mutation p.M39L 0.41 tolerated(0.09) benign(0.001) TCGA-T1-A6J8-01 15 80873588 80873588 A T ARNT2 Silent p.P587P 0.41 TCGA-T1-A6J8-01 15 83330629 83330629 C T AP3B2 Silent p.G969G 0.47 TCGA-T1-A6J8-01 16 21995863 21995863 G A PDZD9 Missense_Mutation p.H114Y 0.23 tolerated(0.9) benign(0.003) TCGA-T1-A6J8-01 16 29848051 29848051 G C MVP Silent p.L227L 0.24 TCGA-T1-A6J8-01 16 29912699 29912699 C A ASPHD1 Missense_Mutation p.P136H 0.45 tolerated(0.13) benign(0.358) TCGA-T1-A6J8-01 17 38546362 38546362 G T TOP2A Missense_Mutation p.T1441N 0.44 tolerated_low_confidence(0.27) benign(0.112) TCGA-T1-A6J8-01 17 48653551 48653551 C - CACNA1G Frame_Shift_Del p.P597Lfs*6 0.29 TCGA-T1-A6J8-01 17 5264353 5264353 A G RABEP1 Intron 0.67 TCGA-T1-A6J8-01 17 60088411 60088411 G A MED13 Silent p.D489D 0.09 TCGA-T1-A6J8-01 17 7578290 7578290 C T TP53 Splice_Site p.X187_splice 0.60 TCGA-T1-A6J8-01 17 76814798 76814798 G C USP36 Missense_Mutation p.T325S 0.33 deleterious(0) benign(0.111) TCGA-T1-A6J8-01 18 57363935 57363935 G A CCBE1 Silent p.I46I 0.29 TCGA-T1-A6J8-01 19 22836127 22836127 G C ZNF492 5'UTR 0.69 TCGA-T1-A6J8-01 19 35775694 35775694 G A HAMP Silent p.T31T 0.36 TCGA-T1-A6J8-01 19 36273524 36273524 A G ARHGAP33 Missense_Mutation p.E419G 0.39 deleterious_low_confidence(0) possibly_damaging(0.47) TCGA-T1-A6J8-01 19 40902988 40902988 G A PRX Missense_Mutation p.S424F 0.38 deleterious(0) possibly_damaging(0.683) TCGA-T1-A6J8-01 19 41386034 41386034 G T CYP2A7 Missense_Mutation p.S203R 0.42 tolerated(0.88) benign(0.002) TCGA-T1-A6J8-01 19 42721194 42721194 C A DEDD2 5'UTR 0.22 TCGA-T1-A6J8-01 19 46388671 46388671 A G IRF2BP1 Missense_Mutation p.L121P 0.05 deleterious(0.02) benign(0.134) TCGA-T1-A6J8-01 19 46543655 46543655 G A IGFL4 Silent p.C30C 0.45 TCGA-T1-A6J8-01 1 19513738 19513738 T A UBR4 Missense_Mutation p.I518L 0.24 benign(0.021) TCGA-T1-A6J8-01 1 231042457 231042458 TC A TTC13 3'UTR 0.09 TCGA-T1-A6J8-01 1 34329977 34329977 C A HMGB4 Missense_Mutation p.A62D 0.15 tolerated(1) probably_damaging(0.936) TCGA-T1-A6J8-01 1 76262910 76262910 T G MSH4 Silent p.A80A 0.31 TCGA-T1-A6J8-01 20 19673903 19673903 C T SLC24A3 Missense_Mutation p.S442L 0.42 tolerated(0.14) benign(0.045) TCGA-T1-A6J8-01 20 33329069 33329069 G T NCOA6 Missense_Mutation p.S1664Y 0.28 probably_damaging(0.974) TCGA-T1-A6J8-01 20 60293777 60293777 G C RP11-429E11.3 3'UTR 0.42 TCGA-T1-A6J8-01 22 18256445 18256445 C T BID Missense_Mutation p.G4D 0.76 tolerated_low_confidence(0.19) unknown(0) TCGA-T1-A6J8-01 22 26422950 26422950 C G MYO18B Missense_Mutation p.T2337R 0.62 tolerated(0.35) possibly_damaging(0.474) TCGA-T1-A6J8-01 2 175111522 175111522 C T OLA1 Missense_Mutation p.D8N 0.10 tolerated(0.07) unknown(0) TCGA-T1-A6J8-01 2 212576873 212576873 C G ERBB4 Missense_Mutation p.L342F 0.50 tolerated(0.16) benign(0.409) TCGA-T1-A6J8-01 2 240158361 240158361 C G HDAC4 Splice_Site p.X8_splice 0.50 TCGA-T1-A6J8-01 2 32842852 32842852 C A BIRC6 Missense_Mutation p.P4819T 0.35 benign(0.269) TCGA-T1-A6J8-01 2 33413881 33413881 A G LTBP1 Missense_Mutation p.Q555R 0.35 deleterious(0.01) probably_damaging(0.933) TCGA-T1-A6J8-01 2 73479859 73479859 A G CCT7 Missense_Mutation p.N501S 0.41 deleterious(0.05) possibly_damaging(0.899) TCGA-T1-A6J8-01 2 73868638 73868638 G T NAT8 Missense_Mutation p.P40T 0.41 deleterious(0) probably_damaging(0.931) TCGA-T1-A6J8-01 2 74438858 74438858 C A MTHFD2 Intron 0.34 TCGA-T1-A6J8-01 2 85836186 85836186 T C C2orf68 Missense_Mutation p.D128G 0.39 deleterious(0.01) possibly_damaging(0.563) TCGA-T1-A6J8-01 3 121712300 121712300 C - ILDR1 Frame_Shift_Del p.W432Cfs*148 0.30 TCGA-T1-A6J8-01 3 165548695 165548695 C T BCHE Missense_Mutation p.G43R 0.12 deleterious(0.01) probably_damaging(1) TCGA-T1-A6J8-01 3 179093112 179093112 G T MFN1 Silent p.L360L 0.31 TCGA-T1-A6J8-01 3 185641706 185641706 G T TRA2B Missense_Mutation p.L134I 0.36 tolerated(0.07) possibly_damaging(0.836) TCGA-T1-A6J8-01 3 193854425 193854425 A T HES1 Missense_Mutation p.E43V 0.46 deleterious(0) probably_damaging(1) TCGA-T1-A6J8-01 3 32932669 32932669 G A TRIM71 Missense_Mutation p.G658D 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-T1-A6J8-01 3 38347895 38347895 C T SLC22A14 Silent p.G126G 0.22 TCGA-T1-A6J8-01 3 51661661 51661661 C G RAD54L2 Missense_Mutation p.Q78E 0.30 tolerated_low_confidence(0.08) probably_damaging(0.93) TCGA-T1-A6J8-01 4 155505247 155505248 - A FGA 3'UTR 0.29 TCGA-T1-A6J8-01 4 177093603 177093603 A G WDR17 Silent p.V1099V 0.10 TCGA-T1-A6J8-01 4 6324799 6324799 T C PPP2R2C 3'UTR 0.82 TCGA-T1-A6J8-01 5 131298318 131298318 C T ACSL6 Silent p.Q589Q 0.06 TCGA-T1-A6J8-01 5 140203515 140203515 G A PCDHA5 Missense_Mutation p.A719T 0.14 deleterious_low_confidence(0) benign(0.364) TCGA-T1-A6J8-01 5 177673419 177673419 C A COL23A1 Silent p.S444S 0.41 TCGA-T1-A6J8-01 5 178541106 178541106 C A ADAMTS2 Missense_Mutation p.R1133L 0.46 tolerated(0.31) benign(0) TCGA-T1-A6J8-01 5 24487960 24487960 C T CDH10 Missense_Mutation p.A727T 0.10 deleterious(0.04) probably_damaging(0.989) TCGA-T1-A6J8-01 5 76249897 76249897 C G CRHBP Silent p.T73T 0.36 TCGA-T1-A6J8-01 5 96360250 96360250 G A LNPEP Missense_Mutation p.V863M 0.12 deleterious(0) probably_damaging(0.988) TCGA-T1-A6J8-01 6 31975055 31975055 G A C4A 3'Flank 0.44 TCGA-T1-A6J8-01 6 35806150 35806150 C A SRPK1 Missense_Mutation p.A583S 0.38 tolerated(1) benign(0.025) TCGA-T1-A6J8-01 6 36075327 36075327 G A MAPK14 Missense_Mutation p.D313N 0.39 deleterious(0.01) possibly_damaging(0.472) TCGA-T1-A6J8-01 7 103198496 103198496 C - RELN Frame_Shift_Del p.E1844Kfs*3 0.25 TCGA-T1-A6J8-01 7 105248313 105248313 T C ATXN7L1 Missense_Mutation p.R858G 0.34 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-T1-A6J8-01 7 107704317 107704317 A G LAMB4 Missense_Mutation p.C984R 0.37 deleterious(0) probably_damaging(1) TCGA-T1-A6J8-01 7 127230141 127230141 A G ARF5 Missense_Mutation p.S94G 0.33 deleterious_low_confidence(0) possibly_damaging(0.756) TCGA-T1-A6J8-01 7 142836665 142836665 C T PIP Missense_Mutation p.P124L 0.07 deleterious(0) probably_damaging(0.999) TCGA-T1-A6J8-01 7 157449210 157449210 G T PTPRN2 Missense_Mutation p.P679T 0.37 tolerated(0.37) benign(0.007) TCGA-T1-A6J8-01 7 19184881 19184881 G T FERD3L Silent p.P35P 0.24 TCGA-T1-A6J8-01 7 20198542 20198542 T C MACC1 Missense_Mutation p.H481R 0.43 tolerated(0.24) probably_damaging(0.997) TCGA-T1-A6J8-01 7 48319312 48319312 A G ABCA13 Missense_Mutation p.T2841A 0.36 benign(0.002) TCGA-T1-A6J8-01 7 69583171 69583171 A T AUTS2 Silent p.G192G 0.32 TCGA-T1-A6J8-01 7 73009991 73009991 C A MLXIPL Silent p.T762T 0.39 TCGA-T1-A6J8-01 7 82544719 82544719 G T PCLO Missense_Mutation p.L4195I 0.36 unknown(0) TCGA-T1-A6J8-01 7 83606504 83606504 C A SEMA3A Missense_Mutation p.R554I 0.39 deleterious(0) probably_damaging(0.997) TCGA-T1-A6J8-01 7 86468656 86468656 C A GRM3 Missense_Mutation p.A609E 0.30 deleterious(0) probably_damaging(1) TCGA-T1-A6J8-01 7 88847522 88847522 C A ZNF804B Missense_Mutation p.N54K 0.35 deleterious(0) probably_damaging(0.999) TCGA-T1-A6J8-01 8 145557361 145557361 G T SCRT1 Missense_Mutation p.A178E 0.21 tolerated(0.7) unknown(0) TCGA-T1-A6J8-01 9 116931485 116931485 C - COL27A1 Frame_Shift_Del p.R552Gfs*17 0.40 TCGA-T1-A6J8-01 9 19576992 19576992 G T SLC24A2 Silent p.L386L 0.62 TCGA-T1-A6J8-01 9 38397865 38397865 A G ALDH1B1 3'UTR 0.65 TCGA-T1-A6J8-01 X 31200869 31200869 T C DMD Silent p.P3320P 0.04 TCGA-T1-A6J8-01 X 3533925 3533926 CG T PRKX Frame_Shift_Del p.A294Efs*4 0.42 TCGA-T1-A6J8-01 X 36303797 36303797 C A CXorf30 5'UTR 0.80 TCGA-T1-A6J8-01 X 36303798 36303798 C A CXorf30 5'UTR 0.81 TCGA-T1-A6J8-01 X 91134152 91134152 C A PCDH11X Silent p.T971T 0.81 TCGA-UB-A7MA-01 10 106976760 106976760 T G SORCS3 Missense_Mutation p.F872V 0.17 tolerated(0.12) benign(0.048) TCGA-UB-A7MA-01 10 108412294 108412294 G A SORCS1 Missense_Mutation p.S774F 0.50 deleterious(0) probably_damaging(0.974) TCGA-UB-A7MA-01 10 127797193 127797193 C T ADAM12 Missense_Mutation p.R240Q 0.10 deleterious(0) probably_damaging(1) TCGA-UB-A7MA-01 10 24809143 24809143 C T KIAA1217 Missense_Mutation p.L757F 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-UB-A7MA-01 10 37431161 37431161 A G ANKRD30A Missense_Mutation p.R390G 0.36 tolerated(0.29) benign(0.043) TCGA-UB-A7MA-01 10 43870995 43870995 C A FXYD4 Missense_Mutation p.A49D 0.30 deleterious(0) possibly_damaging(0.887) TCGA-UB-A7MA-01 10 85994095 85994095 T C LRIT1 Missense_Mutation p.Y210C 0.27 deleterious(0.02) probably_damaging(0.954) TCGA-UB-A7MA-01 10 88818994 88818994 A G GLUD1 Missense_Mutation p.Y439H 0.10 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MA-01 11 10874768 10874768 T C ZBED5 Silent p.R575R 0.34 TCGA-UB-A7MA-01 11 123474218 123474218 G A GRAMD1B Missense_Mutation p.V236M 0.18 deleterious(0) possibly_damaging(0.565) TCGA-UB-A7MA-01 11 134014848 134014848 C T JAM3 Missense_Mutation p.R191C 0.30 tolerated(0.18) benign(0.022) TCGA-UB-A7MA-01 11 27679589 27679589 C G BDNF Missense_Mutation p.G257R 0.27 deleterious(0.04) probably_damaging(0.997) TCGA-UB-A7MA-01 11 30915799 30915799 G T DCDC1 Missense_Mutation p.T1630K 0.51 tolerated(0.07) possibly_damaging(0.607) TCGA-UB-A7MA-01 11 5758404 5758404 C T OR56B1 Silent p.L220L 0.20 TCGA-UB-A7MA-01 11 63662806 63662819 AAGAGGTGAGCACT - MARK2 Splice_Site p.X77_splice 0.19 TCGA-UB-A7MA-01 11 64662446 64662447 CA - ATG2A Frame_Shift_Del p.*1939S 0.12 TCGA-UB-A7MA-01 11 64854466 64854466 C - ZFPL1 Frame_Shift_Del p.R185Gfs*14 0.16 TCGA-UB-A7MA-01 11 65062035 65062035 G A POLA2 Missense_Mutation p.E458K 0.11 tolerated(0.06) benign(0.097) TCGA-UB-A7MA-01 11 68658837 68658837 G T MRPL21 Silent p.R194R 0.24 TCGA-UB-A7MA-01 12 66357126 66357126 G A HMGA2 3'UTR 0.47 TCGA-UB-A7MA-01 14 71514665 71514666 - T PCNX Frame_Shift_Ins p.L1435Ffs*19 0.14 TCGA-UB-A7MA-01 14 94155051 94155051 C A UNC79 Missense_Mutation p.T2179N 0.34 deleterious(0) probably_damaging(0.998) TCGA-UB-A7MA-01 15 42841046 42841046 C T HAUS2 5'UTR 0.22 TCGA-UB-A7MA-01 15 89401573 89401573 G A ACAN Silent p.S1919S 0.51 TCGA-UB-A7MA-01 16 67209000 67209000 G A NOL3 Silent p.%3D 0.62 TCGA-UB-A7MA-01 16 84118638 84118638 C T MBTPS1 Silent p.G412G 0.25 TCGA-UB-A7MA-01 16 88781068 88781068 G C CTU2 Missense_Mutation p.E425D 0.61 tolerated(0.17) benign(0.039) TCGA-UB-A7MA-01 17 12905669 12905669 C T ELAC2 Missense_Mutation p.G409D 0.55 tolerated(0.56) benign(0.003) TCGA-UB-A7MA-01 17 18003031 18003031 T C DRG2 Missense_Mutation p.V154A 0.41 tolerated(0.7) benign(0.232) TCGA-UB-A7MA-01 17 48586029 48586029 C T MYCBPAP Silent p.G41G 0.16 TCGA-UB-A7MA-01 17 54671633 54671633 G A NOG Missense_Mutation p.V17I 0.23 tolerated(0.39) benign(0.016) TCGA-UB-A7MA-01 17 57046925 57046925 C T PPM1E Missense_Mutation p.A270V 0.15 deleterious(0) probably_damaging(0.992) TCGA-UB-A7MA-01 17 78319225 78319225 G A RNF213 Missense_Mutation p.D2364N 0.37 benign(0.051) TCGA-UB-A7MA-01 18 31319066 31319066 G C ASXL3 Missense_Mutation p.E566D 0.18 probably_damaging(0.996) TCGA-UB-A7MA-01 19 11363512 11363512 C A DOCK6 Silent p.L85L 0.16 TCGA-UB-A7MA-01 19 18391859 18391859 C T JUND Missense_Mutation p.D146N 0.20 deleterious(0.04) benign(0.114) TCGA-UB-A7MA-01 19 19136612 19136612 T C SUGP2 Missense_Mutation p.E182G 0.17 deleterious(0) possibly_damaging(0.548) TCGA-UB-A7MA-01 19 33168828 33168828 G A RGS9BP 3'UTR 0.09 TCGA-UB-A7MA-01 19 36278734 36278734 C T ARHGAP33 Silent p.I928I 0.05 TCGA-UB-A7MA-01 19 40746009 40746009 G T AKT2 Silent p.V194V 0.77 TCGA-UB-A7MA-01 19 41281480 41281480 C T MIA Silent p.I11I 0.61 TCGA-UB-A7MA-01 19 41286374 41286374 T - RAB4B Frame_Shift_Del p.W62Gfs*12 0.48 TCGA-UB-A7MA-01 19 45150523 45150523 G C PVR Missense_Mutation p.Q36H 0.16 deleterious(0.01) probably_damaging(0.984) TCGA-UB-A7MA-01 1 150255801 150255801 C A C1orf51 Missense_Mutation p.H42N 0.12 tolerated_low_confidence(0.26) benign(0.117) TCGA-UB-A7MA-01 1 152884007 152884007 G T IVL Silent p.V578V 0.20 TCGA-UB-A7MA-01 1 1558787 1558787 C T MIB2 Silent p.P100P 0.15 TCGA-UB-A7MA-01 1 158637739 158637739 C T SPTA1 Silent p.E649E 0.67 TCGA-UB-A7MA-01 1 160264344 160264344 G A COPA Missense_Mutation p.A878V 0.57 tolerated(0.59) benign(0.001) TCGA-UB-A7MA-01 1 193094335 193094335 C A CDC73 Silent p.V75V 0.06 TCGA-UB-A7MA-01 1 207651318 207651318 T A CR2 Silent p.T997T 0.25 TCGA-UB-A7MA-01 1 227171267 227171267 C A ADCK3 Silent p.A365A 0.60 TCGA-UB-A7MA-01 1 237540701 237540702 - CA RYR2 Frame_Shift_Ins p.I182Tfs*3 0.20 TCGA-UB-A7MA-01 1 32133203 32133203 G A COL16A1 Silent p.T1110T 0.26 TCGA-UB-A7MA-01 1 42041241 42041241 C T HIVEP3 Silent p.P1727P 0.54 TCGA-UB-A7MA-01 1 50886867 50886867 C G DMRTA2 Silent p.A114A 0.48 TCGA-UB-A7MA-01 1 63001217 63001217 C T DOCK7 Silent p.L1155L 0.46 TCGA-UB-A7MA-01 1 77093235 77093235 C - ST6GALNAC3 Frame_Shift_Del p.Y242Tfs*54 0.26 TCGA-UB-A7MA-01 20 1145687 1145687 A C PSMF1 Missense_Mutation p.H260P 0.61 deleterious(0) probably_damaging(0.991) TCGA-UB-A7MA-01 20 18393405 18393405 G A DZANK1 Silent p.F439F 0.26 TCGA-UB-A7MA-01 20 25434223 25434223 G C NINL Missense_Mutation p.A1338G 0.21 deleterious(0.04) benign(0.115) TCGA-UB-A7MA-01 20 30584708 30584708 C T XKR7 Silent p.A396A 0.23 TCGA-UB-A7MA-01 20 45130323 45130323 G C ZNF334 Missense_Mutation p.T552S 0.19 tolerated(0.16) benign(0.005) TCGA-UB-A7MA-01 20 46268408 46268408 C G NCOA3 Missense_Mutation p.P932R 0.27 tolerated(0.08) benign(0.006) TCGA-UB-A7MA-01 20 55012412 55012412 G C CASS4 Missense_Mutation p.D77H 0.38 deleterious(0.02) benign(0.334) TCGA-UB-A7MA-01 20 7915180 7915180 C A HAO1 Silent p.T80T 0.19 TCGA-UB-A7MA-01 21 34994363 34994363 T G CRYZL1 Missense_Mutation p.E52D 0.38 tolerated(0.48) benign(0.168) TCGA-UB-A7MA-01 22 19751710 19751710 C T TBX1 Missense_Mutation p.A182V 0.54 deleterious(0) possibly_damaging(0.612) TCGA-UB-A7MA-01 22 24628913 24628913 G C GGT5 Silent p.P158P 0.44 TCGA-UB-A7MA-01 22 42610029 42610029 G C TCF20 Missense_Mutation p.P428R 0.21 probably_damaging(0.999) TCGA-UB-A7MA-01 2 128947393 128947393 T A UGGT1 3'UTR 0.11 TCGA-UB-A7MA-01 2 133554289 133554289 C T NCKAP5 Missense_Mutation p.R274H 0.19 deleterious(0.04) benign(0.025) TCGA-UB-A7MA-01 2 133721442 133721442 C T NCKAP5 Missense_Mutation p.E144K 0.64 deleterious(0.01) possibly_damaging(0.84) TCGA-UB-A7MA-01 2 168105658 168105658 G C XIRP2 Missense_Mutation p.E2586Q 0.16 benign(0.039) TCGA-UB-A7MA-01 2 201994647 201994647 T C CFLAR Missense_Mutation p.M20T 0.59 tolerated(0.48) benign(0.034) TCGA-UB-A7MA-01 2 207559510 207559510 C T DYTN Missense_Mutation p.V271I 0.09 deleterious(0.04) benign(0.055) TCGA-UB-A7MA-01 2 223917618 223917618 C T KCNE4 Missense_Mutation p.R24C 0.78 tolerated(0.05) possibly_damaging(0.448) TCGA-UB-A7MA-01 2 225367700 225367700 T C CUL3 Silent p.Q489Q 0.16 TCGA-UB-A7MA-01 2 233899058 233899058 C T NEU2 Missense_Mutation p.A145V 0.65 tolerated(0.09) benign(0.004) TCGA-UB-A7MA-01 2 242438683 242438683 A G STK25 Missense_Mutation p.Y192H 0.08 deleterious(0) probably_damaging(1) TCGA-UB-A7MA-01 3 121981009 121981009 G A CASR Missense_Mutation p.G376D 0.45 tolerated(0.12) benign(0.004) TCGA-UB-A7MA-01 3 122632773 122632773 C T SEMA5B Silent p.Q742Q 0.12 TCGA-UB-A7MA-01 3 142232443 142232443 C A ATR Missense_Mutation p.C1514F 0.30 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MA-01 3 443359 443359 G A CHL1 Missense_Mutation p.D1146N 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-UB-A7MA-01 3 45944231 45944231 C T CCR9 3'UTR 0.37 TCGA-UB-A7MA-01 4 165962556 165962556 C T TRIM60 Silent p.F444F 0.22 TCGA-UB-A7MA-01 4 165962559 165962559 A T TRIM60 Silent p.T445T 0.24 TCGA-UB-A7MA-01 4 166976398 166976398 A G TLL1 Silent p.A565A 0.43 TCGA-UB-A7MA-01 4 48512111 48512111 C T FRYL Missense_Mutation p.D2787N 0.45 deleterious(0) probably_damaging(0.996) TCGA-UB-A7MA-01 5 140181914 140181914 G A PCDHA3 Missense_Mutation p.D378N 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-UB-A7MA-01 5 178562943 178562943 G A ADAMTS2 Silent p.D684D 0.48 TCGA-UB-A7MA-01 5 24487658 24487659 - A CDH10 3'UTR 0.64 TCGA-UB-A7MA-01 5 76633096 76633096 G C PDE8B Silent p.L251L 0.14 TCGA-UB-A7MA-01 5 78320120 78320120 G A DMGDH Silent p.L742L 0.37 TCGA-UB-A7MA-01 5 87564594 87564594 A - TMEM161B 5'UTR 0.11 TCGA-UB-A7MA-01 5 89990343 89990343 C T GPR98 Silent p.S2590S 0.45 TCGA-UB-A7MA-01 6 137041704 137041704 C T MAP3K5 Missense_Mutation p.D158N 0.20 tolerated(0.1) benign(0.34) TCGA-UB-A7MA-01 6 161174062 161174062 C T PLG Missense_Mutation p.T801I 0.22 tolerated(0.06) benign(0.309) TCGA-UB-A7MA-01 6 165827145 165827145 C T PDE10A Silent p.T374T 0.63 TCGA-UB-A7MA-01 6 26056402 26056402 C G HIST1H1C Missense_Mutation p.K85N 0.13 deleterious(0) probably_damaging(0.988) TCGA-UB-A7MA-01 6 28333341 28333341 G A ZKSCAN3 Missense_Mutation p.G299D 0.39 tolerated(0.12) benign(0.027) TCGA-UB-A7MA-01 6 32134255 32134255 A C EGFL8 Intron 0.13 TCGA-UB-A7MA-01 6 39895145 39895145 G A MOCS1 Missense_Mutation p.S58F 0.41 deleterious(0) probably_damaging(0.997) TCGA-UB-A7MA-01 6 43005507 43005507 G A CUL7 Silent p.T1756T 0.14 TCGA-UB-A7MA-01 6 50683121 50683121 C T TFAP2D Missense_Mutation p.T111I 0.62 tolerated(0.08) benign(0.002) TCGA-UB-A7MA-01 7 100361668 100361668 G T ZAN Silent p.V1372V 0.11 TCGA-UB-A7MA-01 7 130002379 130002379 A T CPA5 Missense_Mutation p.K212M 0.27 deleterious(0) probably_damaging(0.955) TCGA-UB-A7MA-01 7 20738174 20738174 G A ABCB5 Splice_Site p.X718_splice 0.22 TCGA-UB-A7MA-01 7 29407574 29407574 C T CHN2 Missense_Mutation p.R39C 0.32 deleterious(0.01) probably_damaging(0.983) TCGA-UB-A7MA-01 7 39472733 39472733 G A POU6F2 Missense_Mutation p.G362S 0.27 tolerated(0.17) unknown(0) TCGA-UB-A7MA-01 7 6786666 6786666 G C PMS2CL Splice_Site 0.21 TCGA-UB-A7MA-01 7 82451667 82451667 T C PCLO Intron 0.32 TCGA-UB-A7MA-01 8 30705184 30705184 C A TEX15 Missense_Mutation p.R450S 0.72 tolerated(0.08) benign(0.015) TCGA-UB-A7MA-01 8 38280658 38280658 C T FGFR1 Intron 0.23 TCGA-UB-A7MA-01 9 101748304 101748304 C A COL15A1 Silent p.P186P 0.42 TCGA-UB-A7MA-01 9 104238798 104238798 A C TMEM246 Missense_Mutation p.Y193D 0.24 deleterious(0) possibly_damaging(0.899) TCGA-UB-A7MA-01 X 114468471 114468471 G T LRCH2 Missense_Mutation p.T45N 0.30 tolerated_low_confidence(0.19) unknown(0) TCGA-UB-A7MA-01 X 122598767 122598767 G A GRIA3 Missense_Mutation p.E710K 0.45 tolerated(0.24) possibly_damaging(0.889) TCGA-UB-A7MA-01 X 150348392 150348392 G T GPR50 Missense_Mutation p.V113F 0.49 deleterious(0.02) benign(0.394) TCGA-UB-A7MB-01 10 102827492 102827492 T A KAZALD1 3'Flank 0.85 TCGA-UB-A7MB-01 10 105236257 105236257 A T CALHM3 Missense_Mutation p.W113R 0.71 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 10 107023226 107023226 A G SORCS3 3'UTR 0.92 TCGA-UB-A7MB-01 10 115947807 115947807 A T TDRD1 Missense_Mutation p.T73S 0.85 tolerated(0.17) possibly_damaging(0.801) TCGA-UB-A7MB-01 10 124402796 124402796 A G DMBT1 Missense_Mutation p.Y2375C 0.75 tolerated(0.12) possibly_damaging(0.777) TCGA-UB-A7MB-01 10 127697845 127697845 C A FANK1 Intron 0.74 TCGA-UB-A7MB-01 10 129869164 129869164 G T PTPRE Silent p.P462P 0.70 TCGA-UB-A7MB-01 10 13217598 13217598 A T MCM10 Missense_Mutation p.R228S 0.47 tolerated(0.32) benign(0.01) TCGA-UB-A7MB-01 10 134712524 134712524 T A TTC40 Missense_Mutation p.K1053M 0.49 tolerated(0.06) possibly_damaging(0.596) TCGA-UB-A7MB-01 10 135013094 135013094 C G KNDC1 Nonsense_Mutation p.S964* 0.81 TCGA-UB-A7MB-01 10 14563994 14563994 T A FAM107B Silent p.P226P 0.45 TCGA-UB-A7MB-01 10 15089132 15089132 A T OLAH 5'UTR 0.38 TCGA-UB-A7MB-01 10 17151661 17151661 A T CUBN Missense_Mutation p.D363E 0.35 tolerated(1) benign(0.006) TCGA-UB-A7MB-01 10 18250689 18250689 A C SLC39A12 Silent p.L147L 0.46 TCGA-UB-A7MB-01 10 22705772 22705772 A G SPAG6 3'UTR 0.50 TCGA-UB-A7MB-01 10 25887814 25887814 C A GPR158 Missense_Mutation p.L1087I 0.39 tolerated(0.33) benign(0.001) TCGA-UB-A7MB-01 10 26463109 26463109 A G MYO3A Missense_Mutation p.K1306E 0.48 tolerated_low_confidence(0.17) benign(0.15) TCGA-UB-A7MB-01 10 298459 298459 G C ZMYND11 3'UTR 0.64 TCGA-UB-A7MB-01 10 31816204 31816204 G C ZEB1 3'UTR 0.29 TCGA-UB-A7MB-01 10 395294 395294 T A DIP2C Missense_Mutation p.H1029L 0.52 deleterious(0.01) probably_damaging(0.996) TCGA-UB-A7MB-01 10 43015106 43015106 T C ZNF37BP RNA 0.25 TCGA-UB-A7MB-01 10 43089253 43089253 T A ZNF33B Missense_Mutation p.E382V 0.54 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 10 43870979 43870979 T G FXYD4 Missense_Mutation p.C44G 0.47 deleterious(0.01) possibly_damaging(0.537) TCGA-UB-A7MB-01 10 45484737 45484737 C G RASSF4 Missense_Mutation p.P183A 0.37 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 10 46135397 46135397 T C ZFAND4 Missense_Mutation p.Y195C 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-UB-A7MB-01 10 47087208 47087208 T C NPY4R Missense_Mutation p.L142P 0.19 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 10 48370707 48370707 G C ZNF488 Missense_Mutation p.E59Q 0.26 tolerated(0.22) possibly_damaging(0.473) TCGA-UB-A7MB-01 10 48416370 48416370 A G GDF2 Silent p.I108I 0.39 TCGA-UB-A7MB-01 10 49459781 49459781 A G FRMPD2 Intron 0.30 TCGA-UB-A7MB-01 10 49687696 49687696 C A ARHGAP22 Missense_Mutation p.W145L 0.48 deleterious(0.01) benign(0.011) TCGA-UB-A7MB-01 10 50154931 50154931 T A WDFY4 Missense_Mutation p.Y2632N 0.44 tolerated(0.26) benign(0.005) TCGA-UB-A7MB-01 10 50174650 50174650 T A WDFY4 Missense_Mutation p.L2839Q 0.29 tolerated(0.31) benign(0.015) TCGA-UB-A7MB-01 10 50530956 50530956 C T C10orf71 Silent p.V122V 0.49 TCGA-UB-A7MB-01 10 50532101 50532101 A T C10orf71 Missense_Mutation p.K504M 0.54 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 10 50724703 50724703 T A ERCC6-PGBD3 Missense_Mutation p.E621V 0.47 deleterious_low_confidence(0.05) unknown(0) TCGA-UB-A7MB-01 10 51465326 51465326 T C AGAP7 Missense_Mutation p.K377R 0.53 tolerated(0.14) possibly_damaging(0.771) TCGA-UB-A7MB-01 10 51585413 51585413 A G NCOA4 Silent p.K520K 0.49 TCGA-UB-A7MB-01 10 52005188 52005188 T A ASAH2 Missense_Mutation p.T52S 0.39 tolerated_low_confidence(0.24) benign(0.003) TCGA-UB-A7MB-01 10 52603787 52603787 T A A1CF Silent p.R73R 0.41 TCGA-UB-A7MB-01 10 53564432 53564432 A G PRKG1 Missense_Mutation p.Y227C 0.50 deleterious(0.02) probably_damaging(0.933) TCGA-UB-A7MB-01 10 54531407 54531407 T C MBL2 5'UTR 0.59 TCGA-UB-A7MB-01 10 60553242 60553242 A G BICC1 Splice_Site p.X350_splice 0.37 TCGA-UB-A7MB-01 10 61829458 61829458 A C ANK3 Silent p.S3727S 0.36 TCGA-UB-A7MB-01 10 61956318 61956318 T G ANK3 Silent p.L585L 0.45 TCGA-UB-A7MB-01 10 6255708 6255708 A G PFKFB3 Missense_Mutation p.K67E 0.53 benign(0.437) TCGA-UB-A7MB-01 10 63441009 63441009 C A C10orf107 Missense_Mutation p.F3L 0.14 deleterious(0) probably_damaging(0.98) TCGA-UB-A7MB-01 10 63760062 63760062 A G ARID5B Missense_Mutation p.S239G 0.41 deleterious(0.04) possibly_damaging(0.693) TCGA-UB-A7MB-01 10 64415185 64415185 C T ZNF365 Intron 0.48 TCGA-UB-A7MB-01 10 64425949 64425949 A C ZNF365 Missense_Mutation p.Q427H 0.29 deleterious_low_confidence(0) benign(0.387) TCGA-UB-A7MB-01 10 64914178 64914178 G C NRBF2 3'UTR 0.36 TCGA-UB-A7MB-01 10 70332525 70332525 A G TET1 Missense_Mutation p.I144V 0.73 tolerated(1) benign(0) TCGA-UB-A7MB-01 10 70666604 70666604 A G DDX50 Silent p.E75E 0.38 TCGA-UB-A7MB-01 10 70670895 70670895 A T DDX50 Missense_Mutation p.I178L 0.55 tolerated(0.11) benign(0.268) TCGA-UB-A7MB-01 10 70968759 70968759 A T SUPV3L1 Nonsense_Mutation p.R777* 0.35 TCGA-UB-A7MB-01 10 7213990 7213990 A G SFMBT2 Missense_Mutation p.V761A 0.44 tolerated(0.97) benign(0.002) TCGA-UB-A7MB-01 10 73269837 73269837 A T CDH23-AS1 Intron 0.45 TCGA-UB-A7MB-01 10 75135830 75135830 C T ANXA7 3'UTR 0.19 TCGA-UB-A7MB-01 10 75407619 75407619 A T SYNPO2L Silent p.P597P 0.39 TCGA-UB-A7MB-01 10 75567441 75567441 T C NDST2 Missense_Mutation p.T236A 0.34 tolerated(0.1) probably_damaging(0.94) TCGA-UB-A7MB-01 10 76788413 76788413 A T KAT6B Silent p.P1277P 0.62 TCGA-UB-A7MB-01 10 79601686 79601686 T C DLG5 Missense_Mutation p.T464A 0.41 tolerated(0.76) probably_damaging(0.986) TCGA-UB-A7MB-01 10 79789224 79789224 C A POLR3A 5'UTR 0.43 TCGA-UB-A7MB-01 10 82102044 82102044 G C DYDC1 Missense_Mutation p.A108G 0.41 tolerated(0.25) benign(0.007) TCGA-UB-A7MB-01 10 85991913 85991913 A T LRIT1 Missense_Mutation p.C548S 0.37 deleterious(0) probably_damaging(0.971) TCGA-UB-A7MB-01 10 86259681 86259681 G A CCSER2 Silent p.G792G 0.41 TCGA-UB-A7MB-01 10 91087725 91087725 T C IFIT3 5'UTR 0.88 TCGA-UB-A7MB-01 10 91198482 91198482 A G SLC16A12 Missense_Mutation p.Y303H 0.70 tolerated(0.24) benign(0.181) TCGA-UB-A7MB-01 10 91469185 91469185 A G KIF20B Silent p.S106S 0.77 TCGA-UB-A7MB-01 10 92503355 92503355 A T HTR7 Nonsense_Mutation p.L463* 0.13 TCGA-UB-A7MB-01 10 95259889 95259889 A T CEP55 Missense_Mutation p.L27F 0.81 deleterious(0.01) probably_damaging(0.982) TCGA-UB-A7MB-01 10 97976426 97976426 G A BLNK Missense_Mutation p.S197L 0.72 tolerated(0.25) benign(0.003) TCGA-UB-A7MB-01 10 98145897 98145897 T G TLL2 Missense_Mutation p.N643T 0.60 deleterious(0.01) possibly_damaging(0.804) TCGA-UB-A7MB-01 11 102394039 102394039 T A MMP7 Missense_Mutation p.Y236F 0.25 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 11 102641432 102641432 A T MMP10 3'UTR 0.43 TCGA-UB-A7MB-01 11 102642848 102642848 T A MMP10 Splice_Site p.X409_splice 0.33 TCGA-UB-A7MB-01 11 102742328 102742328 T G MMP12 RNA 0.45 TCGA-UB-A7MB-01 11 102984375 102984375 A T DYNC2H1 Missense_Mutation p.E102V 0.44 benign(0.023) TCGA-UB-A7MB-01 11 103018556 103018556 G T DYNC2H1 Missense_Mutation p.D920Y 0.49 probably_damaging(0.993) TCGA-UB-A7MB-01 11 103082515 103082515 T C DYNC2H1 Intron 0.40 TCGA-UB-A7MB-01 11 103909490 103909490 G T DDI1 3'UTR 0.11 TCGA-UB-A7MB-01 11 105732861 105732861 A T GRIA4 Missense_Mutation p.E200V 0.47 deleterious(0.01) possibly_damaging(0.727) TCGA-UB-A7MB-01 11 105769103 105769103 T A GRIA4 Missense_Mutation p.W279R 0.42 tolerated(0.06) probably_damaging(0.973) TCGA-UB-A7MB-01 11 105795169 105795169 A G GRIA4 Silent p.R507R 0.47 TCGA-UB-A7MB-01 11 105795274 105795274 T A GRIA4 Silent p.P542P 0.49 TCGA-UB-A7MB-01 11 107673871 107673871 G T SLC35F2 Missense_Mutation p.F265L 0.40 tolerated(0.18) benign(0.009) TCGA-UB-A7MB-01 11 108175446 108175446 T C ATM Silent p.H1847H 0.45 TCGA-UB-A7MB-01 11 108253873 108253873 T G C11orf65 Missense_Mutation p.I273L 0.34 tolerated(0.77) benign(0.001) TCGA-UB-A7MB-01 11 1083817 1083817 C A MUC2 Missense_Mutation p.S783R 0.90 possibly_damaging(0.703) TCGA-UB-A7MB-01 11 114453089 114453089 A T NXPE4 Missense_Mutation p.C251S 0.50 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 11 115080321 115080321 T C CADM1 Missense_Mutation p.T351A 0.58 tolerated(0.65) benign(0.003) TCGA-UB-A7MB-01 11 1162340 1162340 T A MUC5AC Missense_Mutation p.C617S 0.88 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 11 117054562 117054562 G A SIDT2 Missense_Mutation p.G257E 0.49 tolerated(0.06) probably_damaging(0.997) TCGA-UB-A7MB-01 11 117789167 117789167 A G TMPRSS13 Silent p.P136P 0.40 TCGA-UB-A7MB-01 11 119185904 119185904 A C MCAM Missense_Mutation p.L46R 0.50 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 11 120349051 120349051 A T ARHGEF12 Missense_Mutation p.H1240L 0.41 tolerated_low_confidence(0.51) benign(0.001) TCGA-UB-A7MB-01 11 123599835 123599835 T C ZNF202 Missense_Mutation p.Q234R 0.23 deleterious(0) probably_damaging(0.985) TCGA-UB-A7MB-01 11 123601695 123601695 T A ZNF202 Splice_Site 0.35 TCGA-UB-A7MB-01 11 123811185 123811185 A T OR4D5 Missense_Mutation p.T288S 0.51 deleterious(0.04) probably_damaging(0.97) TCGA-UB-A7MB-01 11 123900744 123900744 T A OR10G8 Missense_Mutation p.S139T 0.58 tolerated(0.25) benign(0.001) TCGA-UB-A7MB-01 11 124310403 124310403 A T OR8B8 Nonsense_Mutation p.Y193* 0.45 TCGA-UB-A7MB-01 11 125489978 125489978 A G STT3A Missense_Mutation p.E679G 0.40 deleterious(0) possibly_damaging(0.881) TCGA-UB-A7MB-01 11 1261069 1261069 T C MUC5B Silent p.N1208N 0.95 TCGA-UB-A7MB-01 11 128564128 128564128 G T FLI1 5'UTR 0.44 TCGA-UB-A7MB-01 11 130278692 130278692 T A ADAMTS8 Missense_Mutation p.R632W 0.42 deleterious(0.01) probably_damaging(0.966) TCGA-UB-A7MB-01 11 130748331 130748331 C A SNX19 Missense_Mutation p.G989C 0.49 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-UB-A7MB-01 11 133402212 133402212 T C OPCML Missense_Mutation p.H3R 0.40 tolerated_low_confidence(0.42) benign(0.001) TCGA-UB-A7MB-01 11 134022826 134022826 T A NCAPD3 3'UTR 0.54 TCGA-UB-A7MB-01 11 134177095 134177095 T C GLB1L3 Silent p.D318D 0.36 TCGA-UB-A7MB-01 11 1642911 1642911 T C KRTAP5-4 Missense_Mutation p.Q138R 0.78 tolerated_low_confidence(0.1) unknown(0) TCGA-UB-A7MB-01 11 16816089 16816089 C A PLEKHA7 Missense_Mutation p.Q897H 0.70 tolerated(0.06) probably_damaging(0.928) TCGA-UB-A7MB-01 11 17801169 17801169 A T KCNC1 Silent p.P557P 0.87 TCGA-UB-A7MB-01 11 18267497 18267497 T C SAA2 Missense_Mutation p.K64E 0.30 tolerated(0.06) benign(0.061) TCGA-UB-A7MB-01 11 18290840 18290840 A G SAA1 Missense_Mutation p.K64E 0.47 deleterious(0.05) benign(0.098) TCGA-UB-A7MB-01 11 1861801 1861801 A T TNNI2 Missense_Mutation p.E34V 0.88 tolerated(0.2) benign(0.006) TCGA-UB-A7MB-01 11 18743196 18743196 G A IGSF22 Silent p.A88A 0.84 TCGA-UB-A7MB-01 11 18755139 18755139 G T PTPN5 Missense_Mutation p.D348E 0.87 tolerated(0.23) benign(0.19) TCGA-UB-A7MB-01 11 3249418 3249418 C A MRGPRE Missense_Mutation p.E203D 0.93 tolerated(0.11) possibly_damaging(0.845) TCGA-UB-A7MB-01 11 33564933 33564933 A G KIAA1549L Silent p.S311S 0.38 TCGA-UB-A7MB-01 11 36057758 36057758 G T LDLRAD3 Missense_Mutation p.G51V 0.45 deleterious(0.01) probably_damaging(0.996) TCGA-UB-A7MB-01 11 36596843 36596843 A C RAG1 Silent p.A663A 0.41 TCGA-UB-A7MB-01 11 36614915 36614915 A G RAG2 Silent p.N268N 0.35 TCGA-UB-A7MB-01 11 3819070 3819070 G A NUP98 5'Flank 0.95 TCGA-UB-A7MB-01 11 430368 430368 A T ANO9 Missense_Mutation p.V192D 0.87 deleterious(0.01) benign(0.215) TCGA-UB-A7MB-01 11 44297157 44297157 A T ALX4 Missense_Mutation p.V173E 0.50 tolerated(0.89) benign(0.067) TCGA-UB-A7MB-01 11 46334468 46334468 C A CREB3L1 Missense_Mutation p.N343K 0.37 deleterious(0) probably_damaging(0.995) TCGA-UB-A7MB-01 11 4675535 4675535 A T OR51E1 3'UTR 0.30 TCGA-UB-A7MB-01 11 47372124 47372124 T A MYBPC3 Missense_Mutation p.E112V 0.42 tolerated(0.11) benign(0.001) TCGA-UB-A7MB-01 11 4842970 4842970 C A OR51F2 Missense_Mutation p.H119N 0.85 deleterious(0) probably_damaging(0.991) TCGA-UB-A7MB-01 11 4870336 4870336 A T OR51S1 Missense_Mutation p.W35R 0.84 deleterious(0) probably_damaging(0.998) TCGA-UB-A7MB-01 11 4928636 4928636 C A OR51A7 Missense_Mutation p.L13I 0.81 tolerated(0.19) benign(0.009) TCGA-UB-A7MB-01 11 4936808 4936808 T G OR51G2 Missense_Mutation p.H29P 0.14 deleterious(0.01) probably_damaging(0.943) TCGA-UB-A7MB-01 11 49598125 49598125 A G RP11-707M1.1 RNA 0.36 TCGA-UB-A7MB-01 11 4976050 4976050 T G OR51A2 Missense_Mutation p.K298N 0.89 deleterious(0.01) benign(0.058) TCGA-UB-A7MB-01 11 55038029 55038029 A G TRIM48 3'UTR 0.43 TCGA-UB-A7MB-01 11 55110910 55110910 A G OR4A16 Silent p.K78K 0.56 TCGA-UB-A7MB-01 11 55135489 55135489 G A OR4A15 Missense_Mutation p.G44R 0.46 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-UB-A7MB-01 11 55135678 55135678 C A OR4A15 Missense_Mutation p.P107T 0.45 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-UB-A7MB-01 11 55433038 55433038 C T OR4C6 Silent p.I132I 0.45 TCGA-UB-A7MB-01 11 55861466 55861466 A T OR8I2 Missense_Mutation p.Q228L 0.39 deleterious(0.05) benign(0.24) TCGA-UB-A7MB-01 11 55905003 55905003 T A OR8J3 Missense_Mutation p.R64S 0.38 tolerated(0.33) benign(0.371) TCGA-UB-A7MB-01 11 55926969 55926969 A C OR8K5 Silent p.S275S 0.37 TCGA-UB-A7MB-01 11 56086359 56086359 C A OR8K3 Missense_Mutation p.H193N 0.38 tolerated_low_confidence(0.06) benign(0.027) TCGA-UB-A7MB-01 11 56114284 56114284 T C OR8K1 Missense_Mutation p.F257S 0.35 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-UB-A7MB-01 11 56114424 56114424 A T OR8K1 Nonsense_Mutation p.K304* 0.39 TCGA-UB-A7MB-01 11 56257909 56257909 T A OR5M8 3'UTR 0.32 TCGA-UB-A7MB-01 11 56409824 56409824 C A OR5AP2 Missense_Mutation p.G31V 0.47 tolerated(1) benign(0) TCGA-UB-A7MB-01 11 56468593 56468593 C A OR9G1 Missense_Mutation p.L244M 0.18 deleterious(0.04) benign(0.317) TCGA-UB-A7MB-01 11 56468658 56468658 T G OR9G1 Nonsense_Mutation p.Y265* 0.12 TCGA-UB-A7MB-01 11 5799159 5799159 T A OR52N5 Missense_Mutation p.S236C 0.78 deleterious(0.04) probably_damaging(0.951) TCGA-UB-A7MB-01 11 58170104 58170104 G T OR5B3 Missense_Mutation p.P260H 0.42 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-UB-A7MB-01 11 60739381 60739381 T A CD6 Missense_Mutation p.L15H 0.30 tolerated_low_confidence(0.09) possibly_damaging(0.711) TCGA-UB-A7MB-01 11 61091480 61091480 T A DDB1 Nonsense_Mutation p.K298* 0.44 TCGA-UB-A7MB-01 11 61124109 61124109 T A CYB561A3 Missense_Mutation p.Y43F 0.51 tolerated(0.32) benign(0.009) TCGA-UB-A7MB-01 11 61404704 61404704 T A RPLP0P2 RNA 0.36 TCGA-UB-A7MB-01 11 62285505 62285505 T C AHNAK Missense_Mutation p.K5462E 0.49 possibly_damaging(0.597) TCGA-UB-A7MB-01 11 62288328 62288328 T C AHNAK Missense_Mutation p.M4521V 0.28 benign(0.023) TCGA-UB-A7MB-01 11 62289734 62289734 T C AHNAK Missense_Mutation p.H4052R 0.48 benign(0.017) TCGA-UB-A7MB-01 11 62384649 62384649 T A B3GAT3 Missense_Mutation p.Q143L 0.47 tolerated(0.5) benign(0.01) TCGA-UB-A7MB-01 11 62763203 62763203 C T SLC22A8 Missense_Mutation p.R325H 0.43 tolerated(0.16) benign(0.041) TCGA-UB-A7MB-01 11 64359432 64359432 T A SLC22A12 Splice_Site p.X134_splice 0.53 TCGA-UB-A7MB-01 11 64536751 64536751 C A SF1 Missense_Mutation p.K366N 0.39 deleterious(0) probably_damaging(0.958) TCGA-UB-A7MB-01 11 64601242 64601242 T A CDC42BPG Missense_Mutation p.R845W 0.38 deleterious(0) probably_damaging(0.919) TCGA-UB-A7MB-01 11 64699068 64699068 G C PPP2R5B Missense_Mutation p.C328S 0.32 tolerated(0.87) benign(0.227) TCGA-UB-A7MB-01 11 65688799 65688799 A T DRAP1 Splice_Site p.X171_splice 0.54 TCGA-UB-A7MB-01 11 66030441 66030441 A G KLC2 Missense_Mutation p.E229G 0.18 deleterious(0) probably_damaging(0.969) TCGA-UB-A7MB-01 11 66258740 66258740 T C DPP3 Silent p.S228S 0.44 TCGA-UB-A7MB-01 11 6644033 6644033 T A DCHS1 Silent p.L2958L 0.83 TCGA-UB-A7MB-01 11 6653396 6653396 T A DCHS1 Missense_Mutation p.E1116V 0.96 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 11 6816315 6816315 T C OR6A2 Missense_Mutation p.I209V 0.86 deleterious(0.04) possibly_damaging(0.525) TCGA-UB-A7MB-01 11 71705854 71705854 A G RNF121 Silent p.E239E 0.49 TCGA-UB-A7MB-01 11 71907162 71907162 T A FOLR1 Missense_Mutation p.W239R 0.46 tolerated(0.44) unknown(0) TCGA-UB-A7MB-01 11 72538273 72538273 G T ATG16L2 Silent p.V469V 0.37 TCGA-UB-A7MB-01 11 73066691 73066691 A G ARHGEF17 Silent p.L1189L 0.37 TCGA-UB-A7MB-01 11 74800166 74800166 G A OR2AT4 Missense_Mutation p.T198I 0.42 tolerated(0.17) benign(0.141) TCGA-UB-A7MB-01 11 75139660 75139660 A G KLHL35 Missense_Mutation p.L298P 0.50 tolerated(0.17) unknown(0) TCGA-UB-A7MB-01 11 76903162 76903162 A T MYO7A Nonsense_Mutation p.K1331* 0.52 TCGA-UB-A7MB-01 11 78614413 78614413 C G TENM4 Missense_Mutation p.D217H 0.53 tolerated_low_confidence(0.12) probably_damaging(0.976) TCGA-UB-A7MB-01 11 801093 801093 T A PIDD Missense_Mutation p.H553L 0.65 deleterious(0.01) benign(0.317) TCGA-UB-A7MB-01 11 8111646 8111646 A T TUB Nonsense_Mutation p.K96* 0.34 TCGA-UB-A7MB-01 11 85436399 85436399 G T SYTL2 Silent p.P367P 0.55 TCGA-UB-A7MB-01 11 86103710 86103710 A T CCDC81 Missense_Mutation p.Q142H 0.34 deleterious(0.01) possibly_damaging(0.789) TCGA-UB-A7MB-01 11 86108753 86108753 A T CCDC81 Missense_Mutation p.K242N 0.41 tolerated(0.14) benign(0.059) TCGA-UB-A7MB-01 11 88042455 88042455 T A CTSC Missense_Mutation p.N173Y 0.40 deleterious(0) benign(0.285) TCGA-UB-A7MB-01 11 88742219 88742219 T A GRM5 Intron 0.34 TCGA-UB-A7MB-01 11 89069089 89069089 C G NOX4 Missense_Mutation p.A514P 0.43 tolerated(0.27) benign(0.005) TCGA-UB-A7MB-01 11 89907042 89907042 G T NAALAD2 Missense_Mutation p.W487C 0.46 deleterious(0.01) possibly_damaging(0.688) TCGA-UB-A7MB-01 11 92523226 92523226 A T FAT3 Missense_Mutation p.T1485S 0.45 benign(0.026) TCGA-UB-A7MB-01 11 93806484 93806484 C G HEPHL1 Missense_Mutation p.I461M 0.48 deleterious(0.01) probably_damaging(0.993) TCGA-UB-A7MB-01 11 94040439 94040439 T A FOLR4 Missense_Mutation p.W146R 0.45 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 11 94113896 94113896 G T GPR83 Missense_Mutation p.P231T 0.37 tolerated(0.18) possibly_damaging(0.893) TCGA-UB-A7MB-01 11 94354059 94354059 A T PIWIL4 Silent p.P820P 0.44 TCGA-UB-A7MB-01 11 9446500 9446500 A T IPO7 Missense_Mutation p.Q394L 0.85 deleterious(0) probably_damaging(0.997) TCGA-UB-A7MB-01 11 95657217 95657217 A T MTMR2 5'UTR 0.48 TCGA-UB-A7MB-01 12 10005916 10005916 T A CLEC2B Missense_Mutation p.R145W 0.49 deleterious(0) probably_damaging(0.982) TCGA-UB-A7MB-01 12 101018227 101018227 A C GAS2L3 Silent p.P548P 0.39 TCGA-UB-A7MB-01 12 101551063 101551063 A T SLC5A8 Silent p.R609R 0.10 TCGA-UB-A7MB-01 12 101748808 101748808 A G UTP20 Missense_Mutation p.K1769R 0.06 tolerated(0.24) benign(0.127) TCGA-UB-A7MB-01 12 101870606 101870606 G A SPIC Intron 0.53 TCGA-UB-A7MB-01 12 104107485 104107485 C A STAB2 Silent p.T1492T 0.37 TCGA-UB-A7MB-01 12 104381014 104381014 A T TDG 3'UTR 0.50 TCGA-UB-A7MB-01 12 105605024 105605024 T A APPL2 Silent p.R119R 0.50 TCGA-UB-A7MB-01 12 106734764 106734764 T A TCP11L2 Missense_Mutation p.W435R 0.58 tolerated(1) benign(0.001) TCGA-UB-A7MB-01 12 10746500 10746500 T C KLRAP1 RNA 0.38 TCGA-UB-A7MB-01 12 109286766 109286766 A T DAO Missense_Mutation p.E154V 0.38 deleterious(0.03) possibly_damaging(0.712) TCGA-UB-A7MB-01 12 10954328 10954328 T C TAS2R7 Missense_Mutation p.H281R 0.41 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 12 111066600 111066600 A G TCTN1 Silent p.P167P 0.54 TCGA-UB-A7MB-01 12 112717077 112717077 T G HECTD4 Missense_Mutation p.T404P 0.41 probably_damaging(0.961) TCGA-UB-A7MB-01 12 113355732 113355732 A T OAS1 Intron 0.56 TCGA-UB-A7MB-01 12 113557018 113557018 A T RASAL1 Missense_Mutation p.L186Q 0.43 deleterious(0) probably_damaging(0.986) TCGA-UB-A7MB-01 12 117680507 117680507 A G NOS1 Missense_Mutation p.L1023P 0.51 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 12 117703310 117703310 G T NOS1 Missense_Mutation p.D649E 0.48 tolerated(0.7) benign(0.206) TCGA-UB-A7MB-01 12 118298200 118298200 A G KSR2 Missense_Mutation p.C73R 0.50 deleterious(0) probably_damaging(0.939) TCGA-UB-A7MB-01 12 119568581 119568581 C A SRRM4 Missense_Mutation p.S238Y 0.29 deleterious_low_confidence(0) possibly_damaging(0.452) TCGA-UB-A7MB-01 12 119588876 119588876 C A SRRM4 Silent p.V377V 0.46 TCGA-UB-A7MB-01 12 119594391 119594391 A T SRRM4 Missense_Mutation p.S542C 0.50 deleterious_low_confidence(0) unknown(0) TCGA-UB-A7MB-01 12 119631833 119631833 A T HSPB8 3'UTR 0.40 TCGA-UB-A7MB-01 12 120594786 120594786 T A GCN1L1 Missense_Mutation p.E1033V 0.33 probably_damaging(0.919) TCGA-UB-A7MB-01 12 120875944 120875944 T C COX6A1 Silent p.G5G 0.55 TCGA-UB-A7MB-01 12 121098923 121098923 C A CABP1 Missense_Mutation p.A330D 0.33 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 12 122967945 122967945 T C ZCCHC8 Intron 0.42 TCGA-UB-A7MB-01 12 123498472 123498472 C A PITPNM2 Missense_Mutation p.G66C 0.39 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 12 124285839 124285839 G A DNAH10 Missense_Mutation p.G707E 0.51 benign(0.039) TCGA-UB-A7MB-01 12 124383215 124383215 T A DNAH10 Missense_Mutation p.L3047Q 0.48 probably_damaging(0.999) TCGA-UB-A7MB-01 12 124886995 124886995 T A NCOR2 Missense_Mutation p.E532V 0.47 unknown(0) TCGA-UB-A7MB-01 12 130184613 130184613 C A TMEM132D Missense_Mutation p.G237V 0.40 deleterious(0) possibly_damaging(0.899) TCGA-UB-A7MB-01 12 13061653 13061653 T C GPRC5A Missense_Mutation p.M157T 0.52 tolerated(0.06) benign(0.438) TCGA-UB-A7MB-01 12 13140219 13140219 T A HEBP1 Missense_Mutation p.N89Y 0.41 deleterious(0.04) benign(0.093) TCGA-UB-A7MB-01 12 132239947 132239947 C T SFSWAP Missense_Mutation p.P491S 0.42 tolerated(0.31) possibly_damaging(0.482) TCGA-UB-A7MB-01 12 14939997 14939997 T A WBP11 3'UTR 0.33 TCGA-UB-A7MB-01 12 14993397 14993397 T C ART4 Missense_Mutation p.N279D 0.43 deleterious(0.01) probably_damaging(0.991) TCGA-UB-A7MB-01 12 1987485 1987485 G C CACNA2D4 Missense_Mutation p.P572R 0.51 deleterious(0) probably_damaging(0.93) TCGA-UB-A7MB-01 12 2027475 2027475 C A CACNA2D4 Missense_Mutation p.W55C 0.44 tolerated(0.05) benign(0.002) TCGA-UB-A7MB-01 12 22606848 22606848 C T C2CD5 Silent p.E951E 0.44 TCGA-UB-A7MB-01 12 2909266 2909266 A G FKBP4 Missense_Mutation p.E275G 0.40 deleterious(0.01) probably_damaging(0.982) TCGA-UB-A7MB-01 12 29580582 29580582 G T OVCH1 Splice_Site p.X1110_splice 0.36 TCGA-UB-A7MB-01 12 32137547 32137547 A T KIAA1551 Nonsense_Mutation p.R1220* 0.40 TCGA-UB-A7MB-01 12 33532888 33532888 T C SYT10 Missense_Mutation p.H460R 0.50 tolerated(0.12) benign(0.353) TCGA-UB-A7MB-01 12 3806172 3806172 T C EFCAB4B 5'UTR 0.33 TCGA-UB-A7MB-01 12 38710709 38710709 A G ALG10B Missense_Mutation p.E5G 0.41 deleterious_low_confidence(0.01) probably_damaging(0.948) TCGA-UB-A7MB-01 12 39727052 39727052 T A KIF21A Nonsense_Mutation p.R817* 0.34 TCGA-UB-A7MB-01 12 40010969 40010969 A T ABCD2 Missense_Mutation p.V314E 0.48 deleterious(0) possibly_damaging(0.551) TCGA-UB-A7MB-01 12 40940418 40940418 C A MUC19 3'UTR 0.35 TCGA-UB-A7MB-01 12 45105173 45105173 T A NELL2 Missense_Mutation p.Q414L 0.27 tolerated(0.12) benign(0.035) TCGA-UB-A7MB-01 12 46760941 46760941 T C SLC38A2 Silent p.L133L 0.10 TCGA-UB-A7MB-01 12 48723506 48723506 C T H1FNT Silent p.P144P 0.34 TCGA-UB-A7MB-01 12 48919702 48919702 C G OR8S1 Silent p.G96G 0.42 TCGA-UB-A7MB-01 12 4921454 4921454 T C KCNA6 3'UTR 0.39 TCGA-UB-A7MB-01 12 49420043 49420043 T G KMT2D Missense_Mutation p.N5236H 0.47 unknown(0) TCGA-UB-A7MB-01 12 49666554 49666554 A T TUBA1C Silent p.P298P 0.55 TCGA-UB-A7MB-01 12 5021211 5021211 A C KCNA1 Missense_Mutation p.I223L 0.55 tolerated(0.4) benign(0.057) TCGA-UB-A7MB-01 12 5022372 5022372 T G KCNA1 3'UTR 0.41 TCGA-UB-A7MB-01 12 50294962 50294962 T A FAIM2 Silent p.P54P 0.33 TCGA-UB-A7MB-01 12 50473727 50473727 T C ASIC1 Missense_Mutation p.M365T 0.40 tolerated(1) benign(0.002) TCGA-UB-A7MB-01 12 50474966 50474966 T A ASIC1 Splice_Site p.X505_splice 0.48 TCGA-UB-A7MB-01 12 51492562 51492562 A G TFCP2 Silent p.D472D 0.42 TCGA-UB-A7MB-01 12 5154056 5154056 C T KCNA5 Missense_Mutation p.S248F 0.49 deleterious(0.03) possibly_damaging(0.856) TCGA-UB-A7MB-01 12 51865212 51865212 A G SLC4A8 Silent p.L600L 0.40 TCGA-UB-A7MB-01 12 52646243 52646243 A T KRT7 3'Flank 0.39 TCGA-UB-A7MB-01 12 52682242 52682242 T C KRT81 Splice_Site p.X214_splice 0.44 TCGA-UB-A7MB-01 12 52698804 52698804 A G KRT86 Missense_Mutation p.Y243C 0.40 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 12 52862953 52862953 T A KRT6C Missense_Mutation p.S530C 0.47 deleterious(0.04) unknown(0) TCGA-UB-A7MB-01 12 52979933 52979933 C A KRT72 Missense_Mutation p.G457W 0.49 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-UB-A7MB-01 12 53010081 53010081 A G KRT73 Silent p.N177N 0.55 TCGA-UB-A7MB-01 12 53069400 53069400 A C KRT1 Silent p.S504S 0.51 TCGA-UB-A7MB-01 12 53086355 53086355 T C KRT77 Missense_Mutation p.Q426R 0.50 tolerated(0.08) possibly_damaging(0.74) TCGA-UB-A7MB-01 12 53189820 53189820 T A KRT3 Nonsense_Mutation p.R3* 0.29 TCGA-UB-A7MB-01 12 53515148 53515148 A G SOAT2 Missense_Mutation p.D400G 0.36 deleterious(0.03) benign(0.058) TCGA-UB-A7MB-01 12 53605571 53605571 G C RARG Missense_Mutation p.N418K 0.35 deleterious(0) possibly_damaging(0.864) TCGA-UB-A7MB-01 12 53687376 53687376 A G ESPL1 3'UTR 0.44 TCGA-UB-A7MB-01 12 54369200 54369200 T G HOXC11 3'UTR 0.46 TCGA-UB-A7MB-01 12 54379618 54379618 T A HOXC10 Missense_Mutation p.L192Q 0.51 tolerated(0.58) benign(0.04) TCGA-UB-A7MB-01 12 54396569 54396569 A G HOXC9 3'UTR 0.31 TCGA-UB-A7MB-01 12 55421151 55421151 G T NEUROD4 Missense_Mutation p.D310Y 0.47 deleterious(0) probably_damaging(0.935) TCGA-UB-A7MB-01 12 55726148 55726148 A G OR6C3 Missense_Mutation p.I222V 0.31 tolerated_low_confidence(0.06) benign(0.074) TCGA-UB-A7MB-01 12 56619992 56619992 A T NABP2 Missense_Mutation p.N107I 0.49 deleterious(0) possibly_damaging(0.771) TCGA-UB-A7MB-01 12 56827889 56827889 T C TIMELESS Silent p.G22G 0.39 TCGA-UB-A7MB-01 12 57407370 57407370 G T TAC3 Missense_Mutation p.A67D 0.46 tolerated(0.16) possibly_damaging(0.5) TCGA-UB-A7MB-01 12 57970570 57970570 T A KIF5A Missense_Mutation p.L742Q 0.38 tolerated(0.77) benign(0.106) TCGA-UB-A7MB-01 12 58001020 58001020 T A DTX3 Missense_Mutation p.L125H 0.45 tolerated_low_confidence(0.55) benign(0.029) TCGA-UB-A7MB-01 12 58121778 58121778 T A AGAP2 Missense_Mutation p.Q903L 0.43 tolerated(0.05) benign(0.054) TCGA-UB-A7MB-01 12 6140731 6140731 C T VWF Missense_Mutation p.S900N 0.56 tolerated(0.27) benign(0.024) TCGA-UB-A7MB-01 12 6143964 6143964 T C VWF Missense_Mutation p.T859A 0.51 deleterious(0) benign(0.139) TCGA-UB-A7MB-01 12 63083571 63083571 T C PPM1H Missense_Mutation p.T385A 0.42 deleterious(0) probably_damaging(0.998) TCGA-UB-A7MB-01 12 6559629 6559629 C T CD27 Intron 0.44 TCGA-UB-A7MB-01 12 660161 660161 T C B4GALNT3 Silent p.D357D 0.43 TCGA-UB-A7MB-01 12 662644 662644 A G B4GALNT3 Missense_Mutation p.S519G 0.46 tolerated(0.09) benign(0.034) TCGA-UB-A7MB-01 12 668524 668524 G C B4GALNT3 Missense_Mutation p.G942A 0.44 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 12 67703830 67703830 A T CAND1 Nonsense_Mutation p.R1059* 0.38 TCGA-UB-A7MB-01 12 68053742 68053742 A G DYRK2 3'UTR 0.41 TCGA-UB-A7MB-01 12 6923493 6923493 T C CD4 Intron 0.29 TCGA-UB-A7MB-01 12 6974028 6974028 A T USP5 Missense_Mutation p.D796V 0.29 deleterious(0) probably_damaging(0.977) TCGA-UB-A7MB-01 12 69759665 69759665 G T YEATS4 Splice_Site p.X111_splice 0.38 TCGA-UB-A7MB-01 12 70004105 70004105 T C LRRC10 Missense_Mutation p.I172V 0.42 tolerated(0.05) benign(0.429) TCGA-UB-A7MB-01 12 7027101 7027101 C A ENO2 Intron 0.45 TCGA-UB-A7MB-01 12 70983979 70983979 A - PTPRB Frame_Shift_Del p.N605Kfs*5 0.27 TCGA-UB-A7MB-01 12 73012775 73012775 T C TRHDE Missense_Mutation p.L764P 0.47 deleterious(0) benign(0.005) TCGA-UB-A7MB-01 12 75692738 75692738 C T CAPS2 Missense_Mutation p.R307H 0.38 tolerated(0.3) benign(0.012) TCGA-UB-A7MB-01 12 75716791 75716791 C A CAPS2 Missense_Mutation p.C104F 0.34 tolerated(0.39) benign(0.006) TCGA-UB-A7MB-01 12 75720286 75720286 C G CAPS2 Missense_Mutation p.G17A 0.27 tolerated_low_confidence(0.25) benign(0) TCGA-UB-A7MB-01 12 75728612 75728612 A T GLIPR1L1 Missense_Mutation p.D35V 0.46 deleterious(0.01) possibly_damaging(0.522) TCGA-UB-A7MB-01 12 7923072 7923072 A G NANOGNB Missense_Mutation p.N158S 0.46 deleterious(0.04) probably_damaging(0.918) TCGA-UB-A7MB-01 12 81042674 81042674 A T PTPRQ Splice_Site p.X1968_splice 0.37 TCGA-UB-A7MB-01 12 8276418 8276418 G T CLEC4A 5'UTR 0.61 TCGA-UB-A7MB-01 12 8391337 8391337 C G RP11-266K4.9 RNA 0.47 TCGA-UB-A7MB-01 12 86373569 86373569 A T MGAT4C Missense_Mutation p.M312K 0.36 deleterious(0) probably_damaging(0.919) TCGA-UB-A7MB-01 12 88513944 88513944 T C CEP290 Missense_Mutation p.E490G 0.43 benign(0.036) TCGA-UB-A7MB-01 12 91497801 91497801 T C LUM 3'UTR 0.28 TCGA-UB-A7MB-01 12 91502590 91502590 A T LUM Missense_Mutation p.L56Q 0.39 deleterious(0.03) possibly_damaging(0.889) TCGA-UB-A7MB-01 12 92539312 92539324 GGGGGCGGCGTGC - BTG1 5'UTR 0.39 TCGA-UB-A7MB-01 12 93804888 93804888 G A UBE2N Missense_Mutation p.T73I 0.44 deleterious(0) probably_damaging(0.998) TCGA-UB-A7MB-01 12 95905678 95905678 A C METAP2 Silent p.P324P 0.29 TCGA-UB-A7MB-01 12 97051811 97051811 T C C12orf55 Missense_Mutation p.L1751P 0.45 deleterious(0) probably_damaging(0.931) TCGA-UB-A7MB-01 12 97078810 97078810 T A C12orf55 Silent p.A1936A 0.47 TCGA-UB-A7MB-01 12 97114308 97114308 T G C12orf55 Silent p.A2310A 0.43 TCGA-UB-A7MB-01 13 102105095 102105095 T A ITGBL1 5'UTR 0.58 TCGA-UB-A7MB-01 13 102250520 102250520 T G ITGBL1 Missense_Mutation p.C296G 0.89 deleterious(0) probably_damaging(0.996) TCGA-UB-A7MB-01 13 103343193 103343193 T C METTL21C Missense_Mutation p.I84M 0.92 tolerated(0.17) probably_damaging(0.979) TCGA-UB-A7MB-01 13 103383046 103383046 A G CCDC168 Silent p.I2038I 0.95 TCGA-UB-A7MB-01 13 108882622 108882622 A G ABHD13 3'UTR 0.40 TCGA-UB-A7MB-01 13 112723789 112723789 T A SOX1 3'UTR 0.48 TCGA-UB-A7MB-01 13 114324036 114324036 T A GRK1 Missense_Mutation p.V245E 0.56 deleterious(0) probably_damaging(0.998) TCGA-UB-A7MB-01 13 20220900 20220900 A T MPHOSPH8 Missense_Mutation p.K229N 0.37 deleterious_low_confidence(0.03) benign(0.085) TCGA-UB-A7MB-01 13 22113457 22113457 T A MICU2 Missense_Mutation p.R150S 0.45 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 13 23898515 23898515 T A SGCG Silent p.L237L 0.43 TCGA-UB-A7MB-01 13 25168407 25168407 A T RP11-556N21.1 Splice_Site 0.23 TCGA-UB-A7MB-01 13 26349095 26349095 G T ATP8A2 Nonsense_Mutation p.E893* 0.31 TCGA-UB-A7MB-01 13 28542995 28542995 G T CDX2 Missense_Mutation p.A50E 0.45 tolerated(0.34) possibly_damaging(0.603) TCGA-UB-A7MB-01 13 28601380 28601380 T C FLT3 Splice_Site p.X685_splice 0.55 TCGA-UB-A7MB-01 13 31789221 31789221 A G B3GALTL Missense_Mutation p.E35G 0.48 tolerated_low_confidence(0.18) benign(0.002) TCGA-UB-A7MB-01 13 32812069 32812069 A T FRY Missense_Mutation p.S2122C 0.49 tolerated(0.21) benign(0.074) TCGA-UB-A7MB-01 13 32841436 32841436 G C FRY Missense_Mutation p.M2692I 0.42 tolerated(0.31) benign(0) TCGA-UB-A7MB-01 13 35731383 35731383 T C NBEA Silent p.D940D 0.30 TCGA-UB-A7MB-01 13 37679577 37679577 A T CSNK1A1L 5'UTR 0.95 TCGA-UB-A7MB-01 13 39262741 39262741 A T FREM2 Silent p.A420A 0.45 TCGA-UB-A7MB-01 13 39357294 39357294 T A FREM2 Missense_Mutation p.V1910E 0.42 deleterious(0.01) benign(0.31) TCGA-UB-A7MB-01 13 47302989 47302989 A G LRCH1 Missense_Mutation p.E626G 0.38 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 13 48953748 48953748 C - RB1 Frame_Shift_Del p.R451Afs*6 0.50 TCGA-UB-A7MB-01 13 49030437 49030437 A T RB1 Missense_Mutation p.T638S 0.42 tolerated(0.82) benign(0.003) TCGA-UB-A7MB-01 13 49283359 49283359 A G CYSLTR2 3'UTR 0.42 TCGA-UB-A7MB-01 13 49781371 49781371 A T FNDC3A Missense_Mutation p.Q1146L 0.92 tolerated(0.11) benign(0.01) TCGA-UB-A7MB-01 13 52025248 52025248 T A INTS6 Silent p.G84G 0.44 TCGA-UB-A7MB-01 13 52343197 52343197 A T DHRS12 Intron 0.14 TCGA-UB-A7MB-01 13 52676261 52676261 T G NEK5 Missense_Mutation p.L259F 0.44 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 13 53227239 53227239 G A SUGT1 Splice_Site p.X32_splice 0.34 TCGA-UB-A7MB-01 13 60490362 60490362 C G DIAPH3 Missense_Mutation p.R731P 0.49 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 13 70535471 70535471 A G KLHL1 Silent p.A262A 0.39 TCGA-UB-A7MB-01 13 72014704 72014704 T C DACH1 3'UTR 0.40 TCGA-UB-A7MB-01 13 77844588 77844588 C T MYCBP2 Missense_Mutation p.G306D 0.42 probably_damaging(0.913) TCGA-UB-A7MB-01 13 88330290 88330290 A C SLITRK5 Missense_Mutation p.S883R 0.42 tolerated(0.62) benign(0.232) TCGA-UB-A7MB-01 13 97640046 97640046 A T OXGR1 5'UTR 0.39 TCGA-UB-A7MB-01 14 102028973 102028973 C A DIO3 3'UTR 0.32 TCGA-UB-A7MB-01 14 105413692 105413692 T A AHNAK2 Missense_Mutation p.Q2699L 0.39 possibly_damaging(0.535) TCGA-UB-A7MB-01 14 105420987 105420987 T C AHNAK2 Missense_Mutation p.I267M 0.82 benign(0.107) TCGA-UB-A7MB-01 14 106092184 106092184 T A IGHG4 Missense_Mutation p.S74C 0.44 deleterious(0.03) possibly_damaging(0.699) TCGA-UB-A7MB-01 14 106109761 106109761 T A IGHG2 Missense_Mutation p.S254C 0.27 deleterious(0.04) probably_damaging(0.931) TCGA-UB-A7MB-01 14 106174213 106174213 A T IGHA1 Nonsense_Mutation p.C192* 0.49 TCGA-UB-A7MB-01 14 106174396 106174396 T A IGHA1 Silent p.R131R 0.35 TCGA-UB-A7MB-01 14 107083381 107083381 T C IGHV4-59 Missense_Mutation p.S75G 0.35 tolerated_low_confidence(0.15) benign(0.382) TCGA-UB-A7MB-01 14 20344887 20344887 T C OR4K2 Missense_Mutation p.M154T 0.19 tolerated(0.07) benign(0.008) TCGA-UB-A7MB-01 14 20444394 20444394 T C OR4K15 Silent p.V239V 0.59 TCGA-UB-A7MB-01 14 20666491 20666491 A T OR11G2 Nonsense_Mutation p.K333* 0.32 TCGA-UB-A7MB-01 14 20851687 20851687 C A TEP1 Missense_Mutation p.G1276V 0.52 deleterious(0) probably_damaging(0.997) TCGA-UB-A7MB-01 14 20871535 20871535 C A TEP1 Splice_Site p.X422_splice 0.47 TCGA-UB-A7MB-01 14 21058407 21058407 A T RNASE12 3'UTR 0.47 TCGA-UB-A7MB-01 14 22592168 22592168 A T TRAV26-1 Nonsense_Mutation p.R85* 0.50 TCGA-UB-A7MB-01 14 23237247 23237247 A T OXA1L Silent p.V162V 0.43 TCGA-UB-A7MB-01 14 23312529 23312529 G T MMP14 Missense_Mutation p.S251I 0.35 deleterious(0) benign(0.24) TCGA-UB-A7MB-01 14 23315269 23315269 A T MMP14 3'UTR 0.23 TCGA-UB-A7MB-01 14 23512607 23512607 C A PSMB11 3'UTR 0.46 TCGA-UB-A7MB-01 14 23587945 23587945 G T CEBPE Missense_Mutation p.A119E 0.41 deleterious(0.04) benign(0.085) TCGA-UB-A7MB-01 14 23846398 23846398 A G CMTM5 5'UTR 0.64 TCGA-UB-A7MB-01 14 23858850 23858850 A T MYH6 Missense_Mutation p.S1271T 0.43 tolerated(0.69) benign(0.001) TCGA-UB-A7MB-01 14 23892879 23892879 C A MYH7 Silent p.L992L 0.46 TCGA-UB-A7MB-01 14 23900689 23900689 C A MYH7 Missense_Mutation p.G245V 0.42 deleterious(0) probably_damaging(0.925) TCGA-UB-A7MB-01 14 24586232 24586232 G T DCAF11 Missense_Mutation p.G88W 0.46 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 14 24686150 24686150 T C NEDD8 3'UTR 0.49 TCGA-UB-A7MB-01 14 24792119 24792119 A T ADCY4 Nonsense_Mutation p.L778* 0.58 TCGA-UB-A7MB-01 14 24841727 24841727 G T NFATC4 Missense_Mutation p.R489I 0.56 deleterious(0) probably_damaging(0.964) TCGA-UB-A7MB-01 14 24843545 24843545 C A NFATC4 Silent p.A645A 0.48 TCGA-UB-A7MB-01 14 26917063 26917063 A G NOVA1 3'UTR 0.37 TCGA-UB-A7MB-01 14 36006071 36006071 T C INSM2 3'UTR 0.44 TCGA-UB-A7MB-01 14 37051488 37051488 T A NKX2-8 Missense_Mutation p.Q36L 0.42 tolerated(0.3) benign(0.01) TCGA-UB-A7MB-01 14 38281579 38281579 A T TTC6 Missense_Mutation p.T1544S 0.34 tolerated(0.33) possibly_damaging(0.674) TCGA-UB-A7MB-01 14 45414552 45414552 T A KLHL28 Missense_Mutation p.T194S 0.45 tolerated(1) benign(0.003) TCGA-UB-A7MB-01 14 45658267 45658267 A T FANCM Missense_Mutation p.N1681I 0.42 deleterious(0.03) possibly_damaging(0.668) TCGA-UB-A7MB-01 14 50140842 50140842 T A POLE2 Missense_Mutation p.Q139L 0.41 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 14 50318359 50318359 T C NEMF Silent p.L51L 0.41 TCGA-UB-A7MB-01 14 51721056 51721056 A T TMX1 Intron 0.46 TCGA-UB-A7MB-01 14 52481921 52481921 G C NID2 Missense_Mutation p.P1034R 0.48 deleterious(0) probably_damaging(0.989) TCGA-UB-A7MB-01 14 53100355 53100355 G T GPR137C Missense_Mutation p.Q325H 0.43 tolerated(0.33) probably_damaging(0.977) TCGA-UB-A7MB-01 14 53521180 53521180 T A DDHD1 Missense_Mutation p.S805C 0.48 tolerated(0.08) benign(0.033) TCGA-UB-A7MB-01 14 53521253 53521253 T C DDHD1 Silent p.S780S 0.44 TCGA-UB-A7MB-01 14 55514078 55514078 A C SOCS4 3'UTR 0.38 TCGA-UB-A7MB-01 14 55515390 55515390 A G SOCS4 3'UTR 0.34 TCGA-UB-A7MB-01 14 57960276 57960276 T C C14orf105 Missense_Mutation p.Q53R 0.44 tolerated(1) benign(0.008) TCGA-UB-A7MB-01 14 58924599 58924599 A G KIAA0586 Silent p.Q548Q 0.45 TCGA-UB-A7MB-01 14 61190041 61190041 G T SIX4 Missense_Mutation p.A251D 0.33 tolerated(0.38) benign(0.052) TCGA-UB-A7MB-01 14 61190042 61190042 C A SIX4 Missense_Mutation p.A251S 0.30 tolerated(0.19) benign(0.294) TCGA-UB-A7MB-01 14 64886605 64886605 G T MTHFD1 Missense_Mutation p.G230V 0.52 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 14 65009717 65009717 G A HSPA2 3'UTR 0.51 TCGA-UB-A7MB-01 14 65289865 65289865 T A SPTB 5'UTR 0.48 TCGA-UB-A7MB-01 14 67857415 67857415 C T PLEK2 Missense_Mutation p.D274N 0.40 tolerated(0.09) benign(0.168) TCGA-UB-A7MB-01 14 68758622 68758622 A G RAD51B Missense_Mutation p.T260A 0.42 tolerated(0.06) probably_damaging(0.934) TCGA-UB-A7MB-01 14 69727044 69727044 A T GALNT16 Missense_Mutation p.T13S 0.50 tolerated(0.7) probably_damaging(0.985) TCGA-UB-A7MB-01 14 69967307 69967307 T A PLEKHD1 Missense_Mutation p.L86Q 0.48 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 14 72200517 72200517 A G SIPA1L1 Missense_Mutation p.K1687E 0.38 deleterious(0.01) probably_damaging(0.987) TCGA-UB-A7MB-01 14 74514721 74514721 C T CCDC176 Silent p.L246L 0.23 TCGA-UB-A7MB-01 14 74514746 74514757 AAGAGAGTCATA - CCDC176 In_Frame_Del p.Q254_T258delinsP 0.19 TCGA-UB-A7MB-01 14 75019087 75019087 T A LTBP2 Missense_Mutation p.Q401L 0.52 deleterious(0) probably_damaging(0.996) TCGA-UB-A7MB-01 14 75078477 75078477 C T LTBP2 Silent p.G57G 0.26 TCGA-UB-A7MB-01 14 75516322 75516322 A G MLH3 Silent p.L13L 0.54 TCGA-UB-A7MB-01 14 75747981 75747981 A T FOS Missense_Mutation p.S333C 0.47 tolerated(0.26) benign(0.001) TCGA-UB-A7MB-01 14 77599825 77599825 A T ZDHHC22 3'UTR 0.30 TCGA-UB-A7MB-01 14 77844096 77844096 C G SAMD15 Missense_Mutation p.S112C 0.39 tolerated(0.18) possibly_damaging(0.864) TCGA-UB-A7MB-01 14 77942113 77942113 C T ISM2 Missense_Mutation p.S514N 0.24 deleterious(0) possibly_damaging(0.787) TCGA-UB-A7MB-01 14 86089087 86089087 A G FLRT2 Missense_Mutation p.D410G 0.42 tolerated(0.41) benign(0.001) TCGA-UB-A7MB-01 14 88400973 88400973 C A GALC 3'UTR 0.35 TCGA-UB-A7MB-01 14 88401194 88401194 T A GALC Missense_Mutation p.D647V 0.35 deleterious(0.01) benign(0.247) TCGA-UB-A7MB-01 14 88478190 88478190 A T GPR65 Missense_Mutation p.L333F 0.46 deleterious_low_confidence(0.02) probably_damaging(0.961) TCGA-UB-A7MB-01 14 88707163 88707163 T C KCNK10 Missense_Mutation p.H135R 0.62 tolerated(0.39) benign(0.032) TCGA-UB-A7MB-01 14 89044335 89044335 A C ZC3H14 Missense_Mutation p.Q377P 0.37 tolerated(0.08) benign(0.026) TCGA-UB-A7MB-01 14 89154769 89154769 T - EML5 Frame_Shift_Del p.N863Mfs*4 0.30 TCGA-UB-A7MB-01 14 90650791 90650791 A T KCNK13 Missense_Mutation p.Y224F 0.42 tolerated(0.08) possibly_damaging(0.558) TCGA-UB-A7MB-01 14 94395161 94395161 T A FAM181A Missense_Mutation p.L239Q 0.70 tolerated(0.18) possibly_damaging(0.696) TCGA-UB-A7MB-01 15 101598240 101598240 T A LRRK1 Missense_Mutation p.F1525I 0.44 deleterious(0) probably_damaging(0.987) TCGA-UB-A7MB-01 15 101605833 101605833 A G LRRK1 Missense_Mutation p.M1731V 0.48 tolerated_low_confidence(0.39) benign(0) TCGA-UB-A7MB-01 15 102252089 102252089 T C TARSL2 Missense_Mutation p.E269G 0.21 tolerated(0.53) benign(0) TCGA-UB-A7MB-01 15 22332775 22332775 A C RP11-69H14.6 Intron 0.51 TCGA-UB-A7MB-01 15 24923872 24923872 C A NPAP1 Missense_Mutation p.T953N 0.53 tolerated(0.18) benign(0) TCGA-UB-A7MB-01 15 24925004 24925004 A T NPAP1 3'UTR 0.39 TCGA-UB-A7MB-01 15 27777744 27777744 A T GABRG3 Splice_Site p.X375_splice 0.52 TCGA-UB-A7MB-01 15 31197069 31197069 A T FAN1 Missense_Mutation p.D68V 0.39 deleterious(0.05) benign(0.319) TCGA-UB-A7MB-01 15 33024330 33024330 A G GREM1 3'UTR 0.53 TCGA-UB-A7MB-01 15 33091016 33091016 T C FMN1 Missense_Mutation p.I1150M 0.44 deleterious(0.04) probably_damaging(0.995) TCGA-UB-A7MB-01 15 33954785 33954785 A T RYR3 Missense_Mutation p.E1685V 0.46 benign(0.01) TCGA-UB-A7MB-01 15 34080457 34080457 C G RYR3 Missense_Mutation p.L3210V 0.49 probably_damaging(0.998) TCGA-UB-A7MB-01 15 34105180 34105180 C T RYR3 Silent p.V3458V 0.61 TCGA-UB-A7MB-01 15 38804991 38804991 A G RASGRP1 Missense_Mutation p.V281A 0.40 deleterious(0) probably_damaging(0.971) TCGA-UB-A7MB-01 15 40491906 40491906 A T BUB1B Missense_Mutation p.Q460L 0.43 deleterious(0.04) possibly_damaging(0.694) TCGA-UB-A7MB-01 15 40580867 40580867 A T PLCB2 3'UTR 0.59 TCGA-UB-A7MB-01 15 40591344 40591344 T A PLCB2 Missense_Mutation p.E223V 0.41 deleterious(0.03) probably_damaging(0.996) TCGA-UB-A7MB-01 15 40660858 40660858 A T DISP2 Missense_Mutation p.S849C 0.41 tolerated(0.08) possibly_damaging(0.556) TCGA-UB-A7MB-01 15 41120889 41120889 A G PPP1R14D 5'UTR 0.45 TCGA-UB-A7MB-01 15 42134021 42134021 A T PLA2G4B Silent p.S396S 0.44 TCGA-UB-A7MB-01 15 42364510 42364510 A G PLA2G4D Silent p.N466N 0.45 TCGA-UB-A7MB-01 15 42839595 42839595 T A LRRC57 Missense_Mutation p.Q119L 0.53 tolerated(0.14) benign(0.041) TCGA-UB-A7MB-01 15 43500883 43500883 T C EPB42 Missense_Mutation p.Y338C 0.47 deleterious(0.02) possibly_damaging(0.49) TCGA-UB-A7MB-01 15 43571862 43571862 A C TGM7 Missense_Mutation p.W547G 0.32 deleterious(0) benign(0.037) TCGA-UB-A7MB-01 15 43900119 43900119 A C STRC Missense_Mutation p.W1246G 0.49 deleterious(0.01) benign(0) TCGA-UB-A7MB-01 15 43990318 43990318 T G CKMT1A Missense_Mutation p.V328G 0.39 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 15 44158449 44158449 A C WDR76 Silent p.T580T 0.41 TCGA-UB-A7MB-01 15 48058822 48058822 A G SEMA6D Silent p.G552G 0.51 TCGA-UB-A7MB-01 15 48756135 48756135 G T FBN1 Missense_Mutation p.P1676T 0.41 benign(0.306) TCGA-UB-A7MB-01 15 49867301 49867301 T G FAM227B Missense_Mutation p.R184S 0.43 tolerated(0.14) benign(0.021) TCGA-UB-A7MB-01 15 51289653 51289653 A G AP4E1 Missense_Mutation p.Y826C 0.36 tolerated_low_confidence(0.18) benign(0.002) TCGA-UB-A7MB-01 15 52879347 52879347 C T FAM214A Splice_Site p.X959_splice 0.42 TCGA-UB-A7MB-01 15 59373264 59373264 A G RNF111 Missense_Mutation p.H693R 0.45 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-UB-A7MB-01 15 62223325 62223325 T G VPS13C Missense_Mutation p.D2001A 0.45 deleterious(0) probably_damaging(0.928) TCGA-UB-A7MB-01 15 62362914 62362914 T C C2CD4A 3'UTR 0.38 TCGA-UB-A7MB-01 15 63102125 63102125 A C TLN2 Missense_Mutation p.Q2222P 0.52 tolerated(0.16) benign(0.053) TCGA-UB-A7MB-01 15 63673907 63673907 T G CA12 Missense_Mutation p.S5R 0.27 deleterious_low_confidence(0.01) benign(0.004) TCGA-UB-A7MB-01 15 66222097 66222097 A T MEGF11 Silent p.T511T 0.37 TCGA-UB-A7MB-01 15 66795504 66795504 T A RPL4 Splice_Site p.X59_splice 0.39 TCGA-UB-A7MB-01 15 68624266 68624266 C T ITGA11 Silent p.E567E 0.54 TCGA-UB-A7MB-01 15 68624312 68624312 A T ITGA11 Missense_Mutation p.L552H 0.41 deleterious(0) probably_damaging(0.969) TCGA-UB-A7MB-01 15 69006317 69006317 G T CORO2B Missense_Mutation p.M234I 0.33 tolerated(0.36) benign(0.001) TCGA-UB-A7MB-01 15 70959793 70959793 T C UACA Missense_Mutation p.Q1077R 0.51 tolerated(0.15) benign(0.005) TCGA-UB-A7MB-01 15 71185135 71185135 A C LRRC49 5'UTR 0.41 TCGA-UB-A7MB-01 15 72455799 72455799 A G GRAMD2 Missense_Mutation p.V255A 0.45 tolerated(0.51) benign(0) TCGA-UB-A7MB-01 15 73541516 73541516 G A NEO1 Silent p.L574L 0.22 TCGA-UB-A7MB-01 15 73614832 73614832 G T HCN4 Missense_Mutation p.S1201Y 0.45 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-UB-A7MB-01 15 73994758 73994758 A G CD276 Missense_Mutation p.E81G 0.49 tolerated(0.39) probably_damaging(0.982) TCGA-UB-A7MB-01 15 74468897 74468897 A C ISLR 3'UTR 0.30 TCGA-UB-A7MB-01 15 74707046 74707046 T A SEMA7A Missense_Mutation p.Q379L 0.60 deleterious(0.01) possibly_damaging(0.873) TCGA-UB-A7MB-01 15 75013936 75013936 T C CYP1A1 Silent p.G316G 0.43 TCGA-UB-A7MB-01 15 75111520 75111520 A T LMAN1L Missense_Mutation p.S209C 0.35 deleterious(0.01) possibly_damaging(0.796) TCGA-UB-A7MB-01 15 75499850 75499850 A T C15orf39 Silent p.P487P 0.39 TCGA-UB-A7MB-01 15 76152229 76152229 A T UBE2Q2 Missense_Mutation p.Q98L 0.49 deleterious(0) possibly_damaging(0.757) TCGA-UB-A7MB-01 15 76183352 76183352 T C UBE2Q2 Silent p.N342N 0.39 TCGA-UB-A7MB-01 15 77021006 77021006 C G SCAPER Missense_Mutation p.E699Q 0.40 tolerated(0.07) probably_damaging(0.959) TCGA-UB-A7MB-01 15 79277299 79277299 A T RASGRF1 Intron 0.47 TCGA-UB-A7MB-01 15 79748489 79748489 C A KIAA1024 5'UTR 0.37 TCGA-UB-A7MB-01 15 79749742 79749742 A G KIAA1024 Missense_Mutation p.K418R 0.47 tolerated(0.08) benign(0.024) TCGA-UB-A7MB-01 15 82336831 82336831 A G MEX3B Missense_Mutation p.I127T 0.41 deleterious(0.03) probably_damaging(0.994) TCGA-UB-A7MB-01 15 82444096 82444096 C T EFTUD1 Missense_Mutation p.S900N 0.40 tolerated(0.28) benign(0.001) TCGA-UB-A7MB-01 15 83718868 83718868 T C BTBD1 Silent p.T207T 0.49 TCGA-UB-A7MB-01 15 86286977 86286977 C A AKAP13 Silent p.T2775T 0.15 TCGA-UB-A7MB-01 15 86702252 86702252 A C AGBL1 Silent p.A115A 0.51 TCGA-UB-A7MB-01 15 86823010 86823010 T A AGBL1 Missense_Mutation p.L693H 0.48 deleterious(0) probably_damaging(0.976) TCGA-UB-A7MB-01 15 87097675 87097675 C A AGBL1 Silent p.S921S 0.48 TCGA-UB-A7MB-01 15 89388804 89388804 A G ACAN Missense_Mutation p.T374A 0.46 deleterious(0) unknown(0) TCGA-UB-A7MB-01 15 89694906 89694906 A G ABHD2 Splice_Site p.X65_splice 0.51 TCGA-UB-A7MB-01 15 89753385 89753385 G A RLBP1 3'UTR 0.33 TCGA-UB-A7MB-01 15 90246187 90246187 A C WDR93 Missense_Mutation p.K104Q 0.47 tolerated(0.34) benign(0.089) TCGA-UB-A7MB-01 15 91578391 91578391 A C AC068831.10 RNA 0.18 TCGA-UB-A7MB-01 15 94913364 94913364 G A MCTP2 Missense_Mutation p.V513M 0.19 deleterious(0) probably_damaging(0.996) TCGA-UB-A7MB-01 15 99478555 99478555 T A IGF1R Missense_Mutation p.L1066Q 0.48 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 16 11076808 11076808 A T CLEC16A Missense_Mutation p.E344V 0.44 tolerated(1) benign(0.001) TCGA-UB-A7MB-01 16 114754 114754 T C RHBDF1 Missense_Mutation p.H64R 0.44 tolerated(0.4) benign(0) TCGA-UB-A7MB-01 16 1270071 1270071 A G CACNA1H Missense_Mutation p.R2047G 0.45 tolerated(0.35) benign(0.08) TCGA-UB-A7MB-01 16 14340581 14340581 A T MKL2 Silent p.T488T 0.55 TCGA-UB-A7MB-01 16 14341261 14341261 A T MKL2 Intron 0.36 TCGA-UB-A7MB-01 16 1551726 1551726 G A TELO2 Missense_Mutation p.G475D 0.53 tolerated(0.67) benign(0.002) TCGA-UB-A7MB-01 16 17353092 17353092 T C XYLT1 Silent p.R222R 0.48 TCGA-UB-A7MB-01 16 19033071 19033071 A G TMC7 Missense_Mutation p.Y194C 0.35 deleterious(0.02) possibly_damaging(0.827) TCGA-UB-A7MB-01 16 20084903 20084903 G C GPR139 Missense_Mutation p.S12R 0.46 deleterious_low_confidence(0.03) benign(0.367) TCGA-UB-A7MB-01 16 2026270 2026270 A T TBL3 Missense_Mutation p.Q416L 0.44 tolerated(0.7) benign(0.005) TCGA-UB-A7MB-01 16 2048704 2048704 T A ZNF598 Missense_Mutation p.Q787L 0.44 possibly_damaging(0.757) TCGA-UB-A7MB-01 16 20788756 20788756 A T ACSM3 Missense_Mutation p.Q164H 0.51 deleterious(0.01) possibly_damaging(0.775) TCGA-UB-A7MB-01 16 21136500 21136500 T G DNAH3 Missense_Mutation p.H467P 0.50 tolerated(0.05) benign(0.025) TCGA-UB-A7MB-01 16 21215496 21215496 G A ZP2 Missense_Mutation p.T276I 0.42 tolerated(0.16) benign(0.115) TCGA-UB-A7MB-01 16 22316495 22316495 A G POLR3E Missense_Mutation p.K19E 0.41 deleterious(0) possibly_damaging(0.555) TCGA-UB-A7MB-01 16 2282755 2282755 A C E4F1 Splice_Site p.X244_splice 0.62 TCGA-UB-A7MB-01 16 23080584 23080584 C A USP31 Missense_Mutation p.V948L 0.44 tolerated_low_confidence(0.31) benign(0.006) TCGA-UB-A7MB-01 16 23223399 23223399 T C SCNN1G Silent p.C407C 0.37 TCGA-UB-A7MB-01 16 2348543 2348543 T C ABCA3 Splice_Site p.X581_splice 0.40 TCGA-UB-A7MB-01 16 24373102 24373102 T A CACNG3 Missense_Mutation p.L289Q 0.42 deleterious(0.01) probably_damaging(0.944) TCGA-UB-A7MB-01 16 2569783 2569783 A T RP11-20I23.1 3'UTR 0.44 TCGA-UB-A7MB-01 16 26147136 26147136 T G HS3ST4 Missense_Mutation p.V313G 0.38 tolerated(0.38) benign(0.017) TCGA-UB-A7MB-01 16 27374493 27374493 C G IL4R Nonsense_Mutation p.S607* 0.49 TCGA-UB-A7MB-01 16 27448852 27448852 A T IL21R Missense_Mutation p.S66C 0.47 deleterious(0.02) probably_damaging(0.996) TCGA-UB-A7MB-01 16 27509073 27509073 T C GTF3C1 Silent p.P745P 0.46 TCGA-UB-A7MB-01 16 27760972 27760972 C G KIAA0556 Missense_Mutation p.H897Q 0.48 tolerated(1) benign(0.01) TCGA-UB-A7MB-01 16 2880246 2880246 T C ZG16B 5'UTR 0.36 TCGA-UB-A7MB-01 16 29677425 29677425 A T SPN 3'UTR 0.40 TCGA-UB-A7MB-01 16 29755668 29755668 T A C16orf54 Missense_Mutation p.Q202L 0.51 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-UB-A7MB-01 16 29906726 29906726 C A SEZ6L2 Missense_Mutation p.G236V 0.47 tolerated(0.07) probably_damaging(0.94) TCGA-UB-A7MB-01 16 30544349 30544349 T C ZNF747 3'UTR 0.37 TCGA-UB-A7MB-01 16 30680873 30680873 G C FBRS Silent p.P950P 0.45 TCGA-UB-A7MB-01 16 30764551 30764551 A T PHKG2 Splice_Site p.X109_splice 0.47 TCGA-UB-A7MB-01 16 30965031 30965031 A G ORAI3 Missense_Mutation p.M252V 0.52 tolerated(0.14) probably_damaging(0.949) TCGA-UB-A7MB-01 16 31228226 31228226 C A PYDC1 Missense_Mutation p.G42C 0.49 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 16 31419776 31419776 A T ITGAD Missense_Mutation p.Q347L 0.56 deleterious(0) possibly_damaging(0.642) TCGA-UB-A7MB-01 16 31424529 31424529 T C ITGAD Missense_Mutation p.V653A 0.43 deleterious(0.02) benign(0.403) TCGA-UB-A7MB-01 16 31448496 31448496 A G ZNF843 5'UTR 0.62 TCGA-UB-A7MB-01 16 31477974 31477974 A T ARMC5 Missense_Mutation p.I858F 0.40 tolerated(0.61) possibly_damaging(0.668) TCGA-UB-A7MB-01 16 333349 333349 T A PDIA2 Silent p.P60P 0.56 TCGA-UB-A7MB-01 16 3739091 3739091 C A TRAP1 Missense_Mutation p.D99Y 0.40 deleterious(0) probably_damaging(0.996) TCGA-UB-A7MB-01 16 417500 417500 T A MRPL28 3'UTR 0.35 TCGA-UB-A7MB-01 16 47622970 47622970 T C PHKB Missense_Mutation p.L342S 0.91 deleterious(0.01) possibly_damaging(0.595) TCGA-UB-A7MB-01 16 47727355 47727355 A T PHKB Silent p.R944R 0.84 TCGA-UB-A7MB-01 16 49764842 49764842 G A ZNF423 Silent p.S39S 0.84 TCGA-UB-A7MB-01 16 5112500 5112500 A T C16orf89 Missense_Mutation p.L95Q 0.50 deleterious(0) probably_damaging(0.987) TCGA-UB-A7MB-01 16 53498136 53498136 A G RBL2 Splice_Site p.X521_splice 0.82 TCGA-UB-A7MB-01 16 56936357 56936357 C A SLC12A3 Missense_Mutation p.N940K 0.88 tolerated(0.19) benign(0.068) TCGA-UB-A7MB-01 16 57935438 57935438 G A CNGB1 Silent p.L962L 0.86 TCGA-UB-A7MB-01 16 58293762 58293762 A T CCDC113 Missense_Mutation p.N184I 0.88 tolerated(0.25) benign(0.071) TCGA-UB-A7MB-01 16 58320072 58320072 T G PRSS54 Silent p.I97I 0.77 TCGA-UB-A7MB-01 16 618166 618166 T C NHLRC4 Missense_Mutation p.L40P 0.39 deleterious(0.01) possibly_damaging(0.71) TCGA-UB-A7MB-01 16 66431975 66431975 A T CDH5 Missense_Mutation p.Q484L 0.85 deleterious(0) benign(0.21) TCGA-UB-A7MB-01 16 66670433 66670433 G A CMTM4 Missense_Mutation p.P80S 0.84 tolerated(0.75) probably_damaging(1) TCGA-UB-A7MB-01 16 67322137 67322137 G A PLEKHG4 Silent p.S1096S 0.25 TCGA-UB-A7MB-01 16 67325322 67325322 A G KCTD19 Missense_Mutation p.Y819H 0.91 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 16 67375858 67375858 A C LRRC36 Splice_Site p.X24_splice 0.88 TCGA-UB-A7MB-01 16 67909967 67909967 A G EDC4 Missense_Mutation p.T68A 0.88 tolerated(0.49) benign(0) TCGA-UB-A7MB-01 16 70995883 70995883 G T HYDIN Missense_Mutation p.L1983M 0.59 benign(0.407) TCGA-UB-A7MB-01 16 71957226 71957226 G A IST1 Silent p.Q278Q 0.81 TCGA-UB-A7MB-01 16 74411882 74411882 G A NPIPB15 Missense_Mutation p.R4H 0.21 deleterious_low_confidence(0) unknown(0) TCGA-UB-A7MB-01 16 76523604 76523604 A T CNTNAP4 Missense_Mutation p.Q562L 0.81 deleterious(0.04) benign(0.24) TCGA-UB-A7MB-01 16 76592642 76592642 T A CNTNAP4 3'Flank 1.00 TCGA-UB-A7MB-01 16 774367 774367 A T CCDC78 Missense_Mutation p.L303Q 0.47 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 16 81248727 81248727 A T PKD1L2 Missense_Mutation p.V179D 0.74 deleterious(0) probably_damaging(0.929) TCGA-UB-A7MB-01 16 84230327 84230327 T C ADAD2 Missense_Mutation p.V616A 1.00 tolerated(0.3) benign(0.009) TCGA-UB-A7MB-01 16 89246648 89246648 G C CDH15 Missense_Mutation p.S81T 0.71 deleterious(0) possibly_damaging(0.696) TCGA-UB-A7MB-01 16 89348451 89348451 T G ANKRD11 Missense_Mutation p.Q1500P 0.91 benign(0.001) TCGA-UB-A7MB-01 16 89350278 89350278 T C ANKRD11 Missense_Mutation p.D891G 0.92 possibly_damaging(0.505) TCGA-UB-A7MB-01 16 89865509 89865509 T A FANCA Intron 0.85 TCGA-UB-A7MB-01 16 90021593 90021593 G A DEF8 Silent p.L108L 0.82 TCGA-UB-A7MB-01 17 10416941 10416941 A T MYH1 Splice_Site p.X269_splice 0.88 TCGA-UB-A7MB-01 17 10432930 10432930 A G MYH2 Missense_Mutation p.V1023A 0.84 deleterious(0.05) benign(0.077) TCGA-UB-A7MB-01 17 11809030 11809030 G A DNAH9 Missense_Mutation p.D3885N 0.83 benign(0.271) TCGA-UB-A7MB-01 17 15234910 15234910 A G TEKT3 5'UTR 0.71 TCGA-UB-A7MB-01 17 1538573 1538573 T G SCARF1 Missense_Mutation p.T658P 0.84 tolerated(0.3) benign(0.013) TCGA-UB-A7MB-01 17 16253335 16253335 T C CENPV Missense_Mutation p.Q140R 0.85 tolerated(0.23) benign(0.142) TCGA-UB-A7MB-01 17 16332223 16332223 T A TRPV2 Missense_Mutation p.L505Q 0.85 deleterious(0) probably_damaging(0.997) TCGA-UB-A7MB-01 17 16455335 16455335 A T ZNF287 Missense_Mutation p.N707K 0.35 tolerated(0.21) benign(0.154) TCGA-UB-A7MB-01 17 16471157 16471157 A C ZNF287 5'UTR 0.27 TCGA-UB-A7MB-01 17 16852254 16852254 A G TNFRSF13B Silent p.H81H 0.37 TCGA-UB-A7MB-01 17 18428291 18428291 C T FAM106A 3'UTR 0.18 TCGA-UB-A7MB-01 17 18653220 18653220 T C FBXW10 Missense_Mutation p.S286P 0.33 deleterious(0) possibly_damaging(0.585) TCGA-UB-A7MB-01 17 19286534 19286534 A T MAPK7 Missense_Mutation p.Q814L 0.45 deleterious_low_confidence(0.02) possibly_damaging(0.507) TCGA-UB-A7MB-01 17 20919135 20919135 T A USP22 Silent p.A256A 0.38 TCGA-UB-A7MB-01 17 21319679 21319679 A G KCNJ12 Missense_Mutation p.Y342C 0.13 deleterious(0) probably_damaging(0.994) TCGA-UB-A7MB-01 17 21320291 21320291 T A KCNJ12 3'UTR 0.16 TCGA-UB-A7MB-01 17 26499544 26499544 T A NLK Nonsense_Mutation p.L350* 0.41 TCGA-UB-A7MB-01 17 2966603 2966603 T C OR1D5 Missense_Mutation p.Q100R 0.75 deleterious(0) possibly_damaging(0.571) TCGA-UB-A7MB-01 17 2996103 2996103 A T OR1D2 Missense_Mutation p.L63Q 0.83 deleterious(0) probably_damaging(0.942) TCGA-UB-A7MB-01 17 3100889 3100889 T A OR1A2 Missense_Mutation p.V26D 0.72 deleterious(0.01) benign(0.418) TCGA-UB-A7MB-01 17 32583296 32583296 A G CCL2 Silent p.S44S 0.32 TCGA-UB-A7MB-01 17 32612882 32612882 C A CCL11 Missense_Mutation p.P19T 0.49 tolerated(1) benign(0.004) TCGA-UB-A7MB-01 17 33434032 33434032 G T RAD51D Missense_Mutation p.A172D 0.22 deleterious(0) possibly_damaging(0.776) TCGA-UB-A7MB-01 17 33462285 33462285 C A NLE1 Missense_Mutation p.W399C 0.49 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 17 33495163 33495163 T A UNC45B Missense_Mutation p.L412Q 0.45 deleterious(0) probably_damaging(0.934) TCGA-UB-A7MB-01 17 34398401 34398401 A T CCL18 Nonstop_Mutation p.*90Cext*35 0.55 TCGA-UB-A7MB-01 17 36485679 36485679 C A GPR179 Missense_Mutation p.S1258I 0.45 deleterious(0.01) possibly_damaging(0.736) TCGA-UB-A7MB-01 17 36891668 36891668 G T PCGF2 Silent p.T281T 0.45 TCGA-UB-A7MB-01 17 38612731 38612731 A G IGFBP4 Missense_Mutation p.K225E 0.49 tolerated(0.1) probably_damaging(0.995) TCGA-UB-A7MB-01 17 38721654 38721654 A T CCR7 Missense_Mutation p.L3Q 0.26 tolerated_low_confidence(0.5) benign(0.053) TCGA-UB-A7MB-01 17 38855854 38855854 T C KRT24 Silent p.S401S 0.36 TCGA-UB-A7MB-01 17 39137242 39137242 C T KRT40 Silent p.Q283Q 0.48 TCGA-UB-A7MB-01 17 39140425 39140425 A T KRT40 Missense_Mutation p.L34H 0.45 tolerated(0.39) possibly_damaging(0.62) TCGA-UB-A7MB-01 17 39240938 39240938 T A KRTAP4-7 3'UTR 0.43 TCGA-UB-A7MB-01 17 39273796 39273796 G A KRTAP4-11 3'UTR 0.33 TCGA-UB-A7MB-01 17 39274321 39274321 T C KRTAP4-11 Missense_Mutation p.S83G 0.11 deleterious(0.03) unknown(0) TCGA-UB-A7MB-01 17 39305759 39305759 C A KRTAP4-5 Missense_Mutation p.R87S 0.45 unknown(0) TCGA-UB-A7MB-01 17 39411764 39411764 T A KRTAP9-9 Missense_Mutation p.C43S 0.47 deleterious(0.02) unknown(0) TCGA-UB-A7MB-01 17 39619248 39619248 G C KRT32 Missense_Mutation p.L351V 0.53 deleterious(0) probably_damaging(0.998) TCGA-UB-A7MB-01 17 39635633 39635633 T C KRT35 Missense_Mutation p.E226G 0.42 deleterious(0.01) possibly_damaging(0.709) TCGA-UB-A7MB-01 17 39673060 39673060 C A KRT15 Missense_Mutation p.E246D 0.35 deleterious(0) benign(0.308) TCGA-UB-A7MB-01 17 39728014 39728014 A G KRT9 Silent p.S77S 0.36 TCGA-UB-A7MB-01 17 40345476 40345476 C A GHDC Missense_Mutation p.G42W 0.42 tolerated(0.06) possibly_damaging(0.695) TCGA-UB-A7MB-01 17 41004309 41004309 T A AOC3 Missense_Mutation p.Y317N 0.47 tolerated(0.06) benign(0.207) TCGA-UB-A7MB-01 17 41341610 41341610 A T NBR1 Missense_Mutation p.R162S 0.51 deleterious(0) probably_damaging(0.979) TCGA-UB-A7MB-01 17 41352594 41352594 G C NBR1 Missense_Mutation p.E813Q 0.42 tolerated(0.13) benign(0.186) TCGA-UB-A7MB-01 17 42635241 42635241 G T FZD2 Missense_Mutation p.G62V 0.50 deleterious(0) probably_damaging(0.943) TCGA-UB-A7MB-01 17 42750732 42750732 A C C17orf104 Splice_Site p.X820_splice 0.38 TCGA-UB-A7MB-01 17 42979908 42979908 T A CCDC103 Missense_Mutation p.L151Q 0.40 deleterious(0) probably_damaging(0.996) TCGA-UB-A7MB-01 17 43580780 43580780 T A LRRC37A4P 3'Flank 0.37 TCGA-UB-A7MB-01 17 46675506 46675506 A T HOXB6 Missense_Mutation p.S3T 0.46 deleterious(0) probably_damaging(0.935) TCGA-UB-A7MB-01 17 46806111 46806111 A G HOXB13 5'UTR 0.56 TCGA-UB-A7MB-01 17 47679227 47679227 T C SPOP Missense_Mutation p.Y327C 0.47 tolerated(0.18) benign(0.014) TCGA-UB-A7MB-01 17 47699405 47699405 T A SPOP Missense_Mutation p.M35L 0.46 tolerated(0.38) benign(0.001) TCGA-UB-A7MB-01 17 48597032 48597032 T A MYCBPAP Missense_Mutation p.L310Q 0.54 deleterious(0.04) probably_damaging(0.973) TCGA-UB-A7MB-01 17 4997422 4997422 T A ZFP3 3'UTR 0.79 TCGA-UB-A7MB-01 17 55187406 55187406 G T AKAP1 Missense_Mutation p.D579Y 0.34 deleterious(0) probably_damaging(0.998) TCGA-UB-A7MB-01 17 56357776 56357776 C A MPO Nonsense_Mutation p.E67* 0.45 TCGA-UB-A7MB-01 17 58260585 58260585 T A USP32 Missense_Mutation p.D1355V 0.54 deleterious_low_confidence(0.03) benign(0.004) TCGA-UB-A7MB-01 17 59793426 59793426 T A BRIP1 Splice_Site p.X794_splice 0.42 TCGA-UB-A7MB-01 17 60744225 60744225 G T MRC2 Nonsense_Mutation p.E323* 0.49 TCGA-UB-A7MB-01 17 61432399 61432399 G T TANC2 Missense_Mutation p.V670L 0.45 deleterious(0) probably_damaging(0.953) TCGA-UB-A7MB-01 17 62462756 62462756 A T MILR1 Missense_Mutation p.Q65L 0.45 tolerated(0.1) benign(0.018) TCGA-UB-A7MB-01 17 65907751 65907751 A G BPTF Missense_Mutation p.S1251G 0.40 possibly_damaging(0.452) TCGA-UB-A7MB-01 17 6913803 6913803 T A ALOX12 3'UTR 0.85 TCGA-UB-A7MB-01 17 7189182 7189182 C T SLC2A4 Silent p.N427N 0.87 TCGA-UB-A7MB-01 17 72351335 72351335 T C KIF19 Missense_Mutation p.S961P 0.32 tolerated(0.16) benign(0.167) TCGA-UB-A7MB-01 17 73059163 73059163 A T KCTD2 3'UTR 0.48 TCGA-UB-A7MB-01 17 74133497 74133497 C A FOXJ1 Missense_Mutation p.E401D 0.40 tolerated(0.51) benign(0.011) TCGA-UB-A7MB-01 17 74151646 74151646 T C RNF157 Silent p.G565G 0.33 TCGA-UB-A7MB-01 17 75196640 75196640 G T SEC14L1 Missense_Mutation p.M298I 0.42 tolerated(0.06) benign(0.011) TCGA-UB-A7MB-01 17 7578235 7578235 T C TP53 Missense_Mutation p.Y205C 0.80 deleterious(0) probably_damaging(0.99) TCGA-UB-A7MB-01 17 76161891 76161891 A G C17orf99 Intron 0.63 TCGA-UB-A7MB-01 17 76170929 76170929 A G TK1 Missense_Mutation p.C206R 0.44 tolerated(0.23) benign(0.001) TCGA-UB-A7MB-01 17 76210309 76210309 A T BIRC5 5'UTR 0.40 TCGA-UB-A7MB-01 17 77768393 77768393 C A CBX8 3'UTR 0.29 TCGA-UB-A7MB-01 17 79287489 79287489 C T TMEM105 Missense_Mutation p.G118R 0.81 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-UB-A7MB-01 17 80887026 80887026 A T TBCD Missense_Mutation p.S911C 0.87 tolerated(0.19) benign(0.072) TCGA-UB-A7MB-01 17 8700730 8700730 C T MFSD6L Missense_Mutation p.G570E 0.96 tolerated(1) benign(0.003) TCGA-UB-A7MB-01 17 9674809 9674809 C A DHRS7C Missense_Mutation p.G312V 0.64 deleterious_low_confidence(0.01) benign(0.311) TCGA-UB-A7MB-01 17 9774103 9774103 A G GLP2R Missense_Mutation p.I366V 0.70 tolerated(0.35) benign(0.097) TCGA-UB-A7MB-01 18 12325366 12325366 T A TUBB6 Missense_Mutation p.V193E 0.83 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-UB-A7MB-01 18 18559965 18559965 T C ROCK1 Missense_Mutation p.T854A 0.41 deleterious(0.02) probably_damaging(0.998) TCGA-UB-A7MB-01 18 19345790 19345790 T A MIB1 Missense_Mutation p.I96N 0.65 deleterious(0) probably_damaging(0.973) TCGA-UB-A7MB-01 18 19757000 19757000 G A GATA6 Missense_Mutation p.G407D 0.23 deleterious(0) possibly_damaging(0.901) TCGA-UB-A7MB-01 18 20774494 20774494 A G CABLES1 Missense_Mutation p.R334G 0.52 deleterious(0.01) benign(0.155) TCGA-UB-A7MB-01 18 21104400 21104400 A G C18orf8 Silent p.S338S 0.37 TCGA-UB-A7MB-01 18 22669533 22669533 C A ZNF521 Missense_Mutation p.A1268S 0.38 deleterious(0.01) benign(0) TCGA-UB-A7MB-01 18 22806527 22806527 A T ZNF521 Missense_Mutation p.L452Q 0.59 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 18 22807425 22807425 T A ZNF521 Missense_Mutation p.R153W 0.53 deleterious(0) probably_damaging(0.997) TCGA-UB-A7MB-01 18 23854702 23854702 T C TAF4B Missense_Mutation p.S225P 0.43 tolerated(0.38) benign(0.008) TCGA-UB-A7MB-01 18 29039011 29039011 C A DSG3 Missense_Mutation p.L130I 0.41 tolerated(0.14) benign(0.21) TCGA-UB-A7MB-01 18 30517920 30517920 C A CCDC178 3'UTR 0.47 TCGA-UB-A7MB-01 18 30672732 30672732 T A CCDC178 Missense_Mutation p.K794M 0.51 deleterious(0) probably_damaging(0.979) TCGA-UB-A7MB-01 18 32444004 32444004 A T DTNA Missense_Mutation p.E487V 0.56 deleterious(0) probably_damaging(0.997) TCGA-UB-A7MB-01 18 33243838 33243838 G T GALNT1 Intron 0.55 TCGA-UB-A7MB-01 18 40554045 40554045 A T RIT2 Silent p.A76A 0.53 TCGA-UB-A7MB-01 18 43565312 43565312 G C PSTPIP2 3'UTR 0.59 TCGA-UB-A7MB-01 18 43703286 43703286 A G HAUS1 Missense_Mutation p.M208V 0.44 deleterious(0.01) benign(0.01) TCGA-UB-A7MB-01 18 44589401 44589401 A T KATNAL2 Missense_Mutation p.E131V 0.38 deleterious(0.02) possibly_damaging(0.544) TCGA-UB-A7MB-01 18 46448280 46448280 T A SMAD7 Missense_Mutation p.D248V 0.43 deleterious(0) possibly_damaging(0.849) TCGA-UB-A7MB-01 18 52258409 52258409 G T DYNAP 5'UTR 0.39 TCGA-UB-A7MB-01 18 5396213 5396213 T C EPB41L3 Missense_Mutation p.Y987C 0.86 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 18 5416315 5416315 T C EPB41L3 Silent p.T523T 0.78 TCGA-UB-A7MB-01 18 55338765 55338765 T G ATP8B1 Missense_Mutation p.T623P 0.41 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 18 56936364 56936364 A T RAX Missense_Mutation p.C305S 0.42 deleterious(0) possibly_damaging(0.528) TCGA-UB-A7MB-01 18 57122130 57122130 T A CCBE1 Nonsense_Mutation p.K203* 0.41 TCGA-UB-A7MB-01 18 59166656 59166656 G T CDH20 Nonsense_Mutation p.E162* 0.53 TCGA-UB-A7MB-01 18 61254600 61254600 C A SERPINB13 5'UTR 0.45 TCGA-UB-A7MB-01 18 61322962 61322962 G C SERPINB3 Missense_Mutation p.P368A 0.50 deleterious(0) probably_damaging(0.994) TCGA-UB-A7MB-01 18 61562574 61562574 T C SERPINB2 Missense_Mutation p.M82T 0.33 tolerated(0.63) benign(0.003) TCGA-UB-A7MB-01 18 65180193 65180193 A G DSEL Silent p.F561F 0.41 TCGA-UB-A7MB-01 18 66678301 66678301 T C CCDC102B Missense_Mutation p.V465A 0.37 deleterious(0) possibly_damaging(0.721) TCGA-UB-A7MB-01 18 72114218 72114218 T A FAM69C Missense_Mutation p.S167C 0.51 deleterious(0.01) possibly_damaging(0.827) TCGA-UB-A7MB-01 19 10169609 10169609 A G C3P1 RNA 0.42 TCGA-UB-A7MB-01 19 1042061 1042061 A T ABCA7 Splice_Site p.X101_splice 0.33 TCGA-UB-A7MB-01 19 10624587 10624587 C T S1PR5 Silent p.S367S 0.48 TCGA-UB-A7MB-01 19 10625481 10625481 A G S1PR5 Silent p.A69A 0.26 TCGA-UB-A7MB-01 19 10683715 10683715 T A AP1M2 3'UTR 0.65 TCGA-UB-A7MB-01 19 11101907 11101907 A C SMARCA4 Missense_Mutation p.K443Q 0.34 probably_damaging(0.968) TCGA-UB-A7MB-01 19 12255941 12255941 A T ZNF625 3'Flank 0.36 TCGA-UB-A7MB-01 19 12595571 12595571 T A ZNF709 5'UTR 0.38 TCGA-UB-A7MB-01 19 13136064 13136064 A T NFIX Missense_Mutation p.E86V 0.46 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 19 13411364 13411364 A T CACNA1A Missense_Mutation p.V760E 0.32 benign(0.192) TCGA-UB-A7MB-01 19 1460853 1460853 C G APC2 Missense_Mutation p.H506Q 0.13 benign(0.05) TCGA-UB-A7MB-01 19 14749129 14749129 A T EMR3 Silent p.G424G 0.53 TCGA-UB-A7MB-01 19 14755018 14755018 T A EMR3 Missense_Mutation p.R318W 0.47 deleterious(0) possibly_damaging(0.807) TCGA-UB-A7MB-01 19 14828536 14828536 T C ZNF333 Silent p.D297D 0.52 TCGA-UB-A7MB-01 19 15065140 15065140 A T SLC1A6 Missense_Mutation p.S391T 0.36 deleterious(0.03) probably_damaging(0.973) TCGA-UB-A7MB-01 19 15290991 15290991 T G NOTCH3 Silent p.P1073P 0.46 TCGA-UB-A7MB-01 19 15299987 15299987 T A NOTCH3 Splice_Site p.X398_splice 0.38 TCGA-UB-A7MB-01 19 17000522 17000522 T A F2RL3 Missense_Mutation p.L83H 0.52 deleterious(0) probably_damaging(0.968) TCGA-UB-A7MB-01 19 17919063 17919063 A T B3GNT3 Silent p.T149T 0.41 TCGA-UB-A7MB-01 19 18171954 18171954 A G IL12RB1 Missense_Mutation p.I590T 0.46 tolerated(0.16) benign(0.012) TCGA-UB-A7MB-01 19 18377982 18377982 A G KIAA1683 Missense_Mutation p.L123P 0.42 deleterious(0) probably_damaging(0.993) TCGA-UB-A7MB-01 19 19243552 19243552 C T TMEM161A Missense_Mutation p.G67D 0.38 deleterious(0) possibly_damaging(0.905) TCGA-UB-A7MB-01 19 19651056 19651056 A T CILP2 Silent p.G69G 0.50 TCGA-UB-A7MB-01 19 19655120 19655120 G T CILP2 Missense_Mutation p.G589V 0.60 tolerated(0.15) benign(0.221) TCGA-UB-A7MB-01 19 19675781 19675781 G A PBX4 Missense_Mutation p.P296S 0.50 tolerated(0.6) benign(0.002) TCGA-UB-A7MB-01 19 19749243 19749243 T C GMIP Missense_Mutation p.K196E 0.34 deleterious(0) probably_damaging(0.955) TCGA-UB-A7MB-01 19 20026109 20026109 T C ZNF93 Silent p.D8D 0.54 TCGA-UB-A7MB-01 19 20236027 20236027 G T CTC-260E6.2 RNA 0.50 TCGA-UB-A7MB-01 19 21239855 21239855 C T ZNF430 Silent p.T247T 0.44 TCGA-UB-A7MB-01 19 21365902 21365902 G T ZNF431 Missense_Mutation p.G266C 0.49 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 19 21719234 21719234 A G ZNF429 Missense_Mutation p.K127E 0.41 tolerated(0.17) possibly_damaging(0.777) TCGA-UB-A7MB-01 19 22155602 22155602 C T ZNF208 Missense_Mutation p.G745E 0.57 tolerated(0.08) probably_damaging(0.998) TCGA-UB-A7MB-01 19 23926975 23926975 A G ZNF681 Silent p.F459F 0.40 TCGA-UB-A7MB-01 19 291347 291347 A G PPAP2C 5'Flank 0.37 TCGA-UB-A7MB-01 19 30935770 30935770 T G ZNF536 Missense_Mutation p.L434R 0.32 deleterious(0) probably_damaging(0.998) TCGA-UB-A7MB-01 19 32843894 32843894 A G ZNF507 Missense_Mutation p.K53R 0.46 tolerated(0.05) possibly_damaging(0.899) TCGA-UB-A7MB-01 19 33167237 33167237 T A RGS9BP Missense_Mutation p.L23Q 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-UB-A7MB-01 19 36221017 36221017 G C KMT2B Silent p.L1689L 0.49 TCGA-UB-A7MB-01 19 362299 362299 G A THEG Silent p.G347G 0.38 TCGA-UB-A7MB-01 19 36276186 36276186 A T ARHGAP33 Missense_Mutation p.K606M 0.47 tolerated_low_confidence(0.05) possibly_damaging(0.891) TCGA-UB-A7MB-01 19 36729151 36729151 A G ZNF146 3'UTR 0.41 TCGA-UB-A7MB-01 19 37644045 37644045 T G ZNF585A Silent p.T197T 0.48 TCGA-UB-A7MB-01 19 3811305 3811305 A T ZFR2 Missense_Mutation p.S768T 0.40 tolerated(0.24) benign(0.091) TCGA-UB-A7MB-01 19 3831767 3831767 G C ZFR2 Silent p.S163S 0.29 TCGA-UB-A7MB-01 19 38383818 38383818 A T WDR87 Missense_Mutation p.L803Q 0.37 probably_damaging(0.999) TCGA-UB-A7MB-01 19 38384319 38384319 A G WDR87 Missense_Mutation p.L636S 0.33 probably_damaging(0.998) TCGA-UB-A7MB-01 19 39076640 39076640 G T RYR1 Nonsense_Mutation p.E4956* 0.44 TCGA-UB-A7MB-01 19 39517611 39517611 T A FBXO27 Nonsense_Mutation p.R203* 0.29 TCGA-UB-A7MB-01 19 39669272 39669272 A T PAK4 3'UTR 0.51 TCGA-UB-A7MB-01 19 40221954 40221954 T C CLC 3'UTR 0.42 TCGA-UB-A7MB-01 19 40724111 40724111 T A TTC9B Missense_Mutation p.S60C 0.48 deleterious(0.01) benign(0.354) TCGA-UB-A7MB-01 19 40903671 40903671 T A PRX Silent p.R196R 0.50 TCGA-UB-A7MB-01 19 4117490 4117490 T C MAP2K2 Missense_Mutation p.E77G 0.29 deleterious(0) probably_damaging(0.983) TCGA-UB-A7MB-01 19 4207906 4207906 G A ANKRD24 Missense_Mutation p.G258E 0.47 tolerated(0.09) probably_damaging(0.972) TCGA-UB-A7MB-01 19 42265920 42265920 C G CEACAM6 Nonsense_Mutation p.Y249* 0.40 TCGA-UB-A7MB-01 19 42342129 42342129 A C LYPD4 Missense_Mutation p.C140G 0.47 tolerated(0.47) benign(0) TCGA-UB-A7MB-01 19 42471493 42471493 C A ATP1A3 Splice_Site p.X987_splice 0.35 TCGA-UB-A7MB-01 19 4249223 4249223 A G CCDC94 Splice_Site p.X9_splice 0.45 TCGA-UB-A7MB-01 19 42621499 42621499 C A POU2F2 Missense_Mutation p.S69I 0.59 deleterious(0.02) possibly_damaging(0.605) TCGA-UB-A7MB-01 19 42793207 42793207 G C CIC Missense_Mutation p.E367Q 0.57 probably_damaging(0.918) TCGA-UB-A7MB-01 19 42937971 42937971 A G CXCL17 Silent p.S39S 0.59 TCGA-UB-A7MB-01 19 43233999 43233999 G T PSG3 Missense_Mutation p.P307T 0.42 tolerated(0.56) probably_damaging(0.938) TCGA-UB-A7MB-01 19 4333984 4333984 T A STAP2 Missense_Mutation p.N54Y 0.52 deleterious(0.02) possibly_damaging(0.575) TCGA-UB-A7MB-01 19 43348759 43348759 G T PSG10P RNA 0.50 TCGA-UB-A7MB-01 19 43406389 43406389 A C PSG6 3'Flank 0.45 TCGA-UB-A7MB-01 19 43412004 43412004 T C PSG6 Missense_Mutation p.K237E 0.61 tolerated(0.7) benign(0.003) TCGA-UB-A7MB-01 19 43511961 43511961 T A PSG11 3'UTR 0.26 TCGA-UB-A7MB-01 19 43568607 43568607 T G PSG2 3'UTR 0.51 TCGA-UB-A7MB-01 19 43757557 43757557 A G PSG9 3'UTR 0.47 TCGA-UB-A7MB-01 19 43969695 43969695 T A LYPD3 Missense_Mutation p.Q10L 0.26 tolerated_low_confidence(0.17) benign(0.002) TCGA-UB-A7MB-01 19 44301650 44301650 T A LYPD5 3'UTR 0.57 TCGA-UB-A7MB-01 19 44470227 44470227 A T ZNF221 Silent p.S191S 0.41 TCGA-UB-A7MB-01 19 44515114 44515114 A G ZNF230 Missense_Mutation p.Y308C 0.43 deleterious(0.02) probably_damaging(0.986) TCGA-UB-A7MB-01 19 44610721 44610721 A T ZNF224 Silent p.A136A 0.49 TCGA-UB-A7MB-01 19 44832441 44832441 T A ZNF112 Missense_Mutation p.R629S 0.43 deleterious(0.01) probably_damaging(0.997) TCGA-UB-A7MB-01 19 44833042 44833042 T G ZNF112 Missense_Mutation p.N429T 0.33 deleterious(0.01) benign(0.118) TCGA-UB-A7MB-01 19 44947141 44947141 A T ZNF229 5'UTR 0.29 TCGA-UB-A7MB-01 19 46318016 46318016 T A RSPH6A Missense_Mutation p.E140V 0.45 deleterious_low_confidence(0.01) benign(0.02) TCGA-UB-A7MB-01 19 47425269 47425269 C T ARHGAP35 Nonsense_Mutation p.Q1113* 0.44 TCGA-UB-A7MB-01 19 4795073 4795073 A T FEM1A 3'UTR 0.44 TCGA-UB-A7MB-01 19 47986778 47986778 A T KPTN Missense_Mutation p.V97E 0.34 deleterious(0) probably_damaging(0.988) TCGA-UB-A7MB-01 19 48197947 48197947 G T GLTSCR1 Silent p.L953L 0.50 TCGA-UB-A7MB-01 19 48519284 48519284 T G ELSPBP1 Missense_Mutation p.C115G 0.31 deleterious(0.01) possibly_damaging(0.856) TCGA-UB-A7MB-01 19 48551611 48551611 A C PLA2G4C Missense_Mutation p.C549G 0.58 tolerated_low_confidence(0.29) benign(0.012) TCGA-UB-A7MB-01 19 4902726 4902726 G T ARRDC5 Missense_Mutation p.P52T 0.53 deleterious(0) probably_damaging(0.967) TCGA-UB-A7MB-01 19 49261303 49261303 A T FGF21 Silent p.P152P 0.34 TCGA-UB-A7MB-01 19 49473817 49473817 T C GYS1 Missense_Mutation p.K599E 0.51 tolerated(0.06) benign(0.253) TCGA-UB-A7MB-01 19 49703938 49703938 G T TRPM4 Missense_Mutation p.G950V 0.44 deleterious(0) probably_damaging(0.969) TCGA-UB-A7MB-01 19 50154181 50154181 A C SCAF1 Missense_Mutation p.T179P 0.31 unknown(0) TCGA-UB-A7MB-01 19 50453266 50453266 A T SIGLEC11 Silent p.L686L 0.38 TCGA-UB-A7MB-01 19 50861904 50861904 A C NAPSA Missense_Mutation p.M390R 0.45 tolerated(0.57) benign(0.002) TCGA-UB-A7MB-01 19 51010832 51010832 T C JOSD2 Missense_Mutation p.R91G 0.21 deleterious(0.05) possibly_damaging(0.831) TCGA-UB-A7MB-01 19 51189492 51189492 A G SHANK1 Splice_Site p.X859_splice 0.53 TCGA-UB-A7MB-01 19 51362982 51362982 G T KLK3 Intron 0.25 TCGA-UB-A7MB-01 19 51503677 51503677 C A KLK8 Intron 0.56 TCGA-UB-A7MB-01 19 51768725 51768725 A T SIGLECL1 Silent p.G42G 0.42 TCGA-UB-A7MB-01 19 51828607 51828607 C A IGLON5 Silent p.A133A 0.44 TCGA-UB-A7MB-01 19 51885739 51885739 G T LIM2 Missense_Mutation p.F128L 0.42 tolerated(0.16) benign(0.073) TCGA-UB-A7MB-01 19 51958812 51958812 G A SIGLEC8 Missense_Mutation p.P304L 0.57 deleterious(0) probably_damaging(0.996) TCGA-UB-A7MB-01 19 52003208 52003208 G T SIGLEC12 Missense_Mutation p.N258K 0.47 deleterious(0.01) possibly_damaging(0.896) TCGA-UB-A7MB-01 19 52004872 52004872 C A SIGLEC12 Missense_Mutation p.C39F 0.42 deleterious(0.01) possibly_damaging(0.837) TCGA-UB-A7MB-01 19 52023460 52023460 T A SIGLEC6 Missense_Mutation p.E413V 0.33 tolerated(0.3) benign(0.028) TCGA-UB-A7MB-01 19 52249744 52249744 A T FPR1 Silent p.P168P 0.51 TCGA-UB-A7MB-01 19 52328441 52328441 A T FPR3 3'UTR 0.35 TCGA-UB-A7MB-01 19 53472746 53472746 A T ZNF702P RNA 0.43 TCGA-UB-A7MB-01 19 53474050 53474050 T G ZNF702P RNA 0.50 TCGA-UB-A7MB-01 19 53644359 53644359 A G ZNF347 Silent p.C575C 0.47 TCGA-UB-A7MB-01 19 53741010 53741010 A C ZNF677 Missense_Mutation p.C324G 0.53 deleterious(0.02) benign(0.009) TCGA-UB-A7MB-01 19 53793261 53793261 A T BIRC8 Missense_Mutation p.F123I 0.42 deleterious(0) probably_damaging(0.926) TCGA-UB-A7MB-01 19 54139945 54139945 T A DPRX Silent p.G93G 0.39 TCGA-UB-A7MB-01 19 54215574 54215574 G T MIR517A RNA 0.43 TCGA-UB-A7MB-01 19 54401219 54401219 C A PRKCG Silent p.R316R 0.62 TCGA-UB-A7MB-01 19 54444786 54444786 A C CACNG7 Silent p.R163R 0.56 TCGA-UB-A7MB-01 19 5456001 5456001 A T ZNRF4 Missense_Mutation p.T167S 0.67 tolerated(0.24) benign(0.057) TCGA-UB-A7MB-01 19 54682345 54682345 A G MBOAT7 Intron 0.52 TCGA-UB-A7MB-01 19 54756411 54756411 G A LILRB5 Silent p.A492A 0.38 TCGA-UB-A7MB-01 19 54927975 54927975 A G TTYH1 Intron 0.38 TCGA-UB-A7MB-01 19 55497556 55497556 C A NLRP2 Missense_Mutation p.L747I 0.41 deleterious(0.03) benign(0.344) TCGA-UB-A7MB-01 19 55505725 55505725 G T NLRP2 Missense_Mutation p.G933W 0.53 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 19 55505788 55505788 T C NLRP2 Missense_Mutation p.C954R 0.51 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 19 55538983 55538983 C A GP6 Missense_Mutation p.W191C 0.58 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-UB-A7MB-01 19 55556516 55556516 T C RDH13 Missense_Mutation p.R308G 0.25 deleterious(0.03) benign(0.164) TCGA-UB-A7MB-01 19 55689571 55689571 A G SYT5 Missense_Mutation p.I82T 0.63 tolerated(0.61) benign(0.004) TCGA-UB-A7MB-01 19 56467397 56467397 T A NLRP8 Missense_Mutation p.V658E 0.94 deleterious(0) possibly_damaging(0.69) TCGA-UB-A7MB-01 19 57036782 57036782 A C ZNF471 Missense_Mutation p.H449P 0.83 deleterious(0) probably_damaging(0.993) TCGA-UB-A7MB-01 19 57132817 57132817 A T ZNF71 Silent p.A54A 0.88 TCGA-UB-A7MB-01 19 578005 578005 A T BSG Missense_Mutation p.E100V 0.23 tolerated(0.34) benign(0.001) TCGA-UB-A7MB-01 19 57803168 57803168 A G ZNF460 Missense_Mutation p.Y420C 0.94 deleterious(0) probably_damaging(0.997) TCGA-UB-A7MB-01 19 58048776 58048776 T G ZNF549 Missense_Mutation p.V135G 0.73 tolerated(1) benign(0.003) TCGA-UB-A7MB-01 19 58598367 58598367 C G ZSCAN18 Missense_Mutation p.K273N 1.00 tolerated(0.49) benign(0.263) TCGA-UB-A7MB-01 19 58601546 58601546 T A ZSCAN18 Missense_Mutation p.Q86L 0.78 deleterious(0.01) benign(0.436) TCGA-UB-A7MB-01 19 5918611 5918611 T A RANBP3 Missense_Mutation p.T457S 0.50 tolerated(0.14) probably_damaging(0.983) TCGA-UB-A7MB-01 19 6478804 6478804 G A DENND1C Missense_Mutation p.A119V 0.43 tolerated(0.12) benign(0.308) TCGA-UB-A7MB-01 19 6710810 6710810 T C C3 Missense_Mutation p.E509G 0.43 tolerated(0.22) benign(0.012) TCGA-UB-A7MB-01 19 7117093 7117093 T A INSR Missense_Mutation p.T1375S 0.40 tolerated(0.69) benign(0.001) TCGA-UB-A7MB-01 19 757065 757065 C T MISP Missense_Mutation p.A40V 0.52 tolerated(0.2) benign(0.26) TCGA-UB-A7MB-01 19 758002 758002 G T MISP Missense_Mutation p.Q352H 0.42 deleterious(0) probably_damaging(0.994) TCGA-UB-A7MB-01 19 7585107 7585107 G A ZNF358 Missense_Mutation p.A327T 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-UB-A7MB-01 19 758534 758534 G T MISP Missense_Mutation p.V530L 0.41 tolerated(0.2) benign(0.423) TCGA-UB-A7MB-01 19 758601 758601 A T MISP Missense_Mutation p.E552V 0.44 deleterious(0) probably_damaging(0.991) TCGA-UB-A7MB-01 19 8175948 8175948 A T FBN3 Missense_Mutation p.C1402S 0.33 deleterious(0) probably_damaging(0.996) TCGA-UB-A7MB-01 19 853327 853327 A C ELANE Missense_Mutation p.Q97P 0.43 deleterious(0) possibly_damaging(0.536) TCGA-UB-A7MB-01 19 9062263 9062263 T C MUC16 Missense_Mutation p.I8395V 0.54 unknown(0) TCGA-UB-A7MB-01 19 9067175 9067175 A T MUC16 Silent p.T6757T 0.47 TCGA-UB-A7MB-01 19 9067507 9067507 T C MUC16 Missense_Mutation p.I6647V 0.47 unknown(0) TCGA-UB-A7MB-01 19 9069194 9069194 G A MUC16 Silent p.A6084A 0.51 TCGA-UB-A7MB-01 19 9071260 9071260 T A MUC16 Missense_Mutation p.S5396C 0.44 unknown(0) TCGA-UB-A7MB-01 19 9077042 9077042 G T MUC16 Missense_Mutation p.D3468E 0.56 unknown(0) TCGA-UB-A7MB-01 19 9226012 9226012 A T OR7G1 Nonsense_Mutation p.L143* 0.36 TCGA-UB-A7MB-01 19 9297892 9297892 A T OR7D2 3'UTR 0.41 TCGA-UB-A7MB-01 19 9676562 9676562 T C ZNF121 3'UTR 0.47 TCGA-UB-A7MB-01 1 101186271 101186271 A T VCAM1 Missense_Mutation p.R102W 0.47 deleterious(0.02) possibly_damaging(0.535) TCGA-UB-A7MB-01 1 10221232 10221232 T C UBE4B Missense_Mutation p.M1029T 0.41 deleterious(0) probably_damaging(0.992) TCGA-UB-A7MB-01 1 102270334 102270334 A G OLFM3 Silent p.N279N 0.50 TCGA-UB-A7MB-01 1 103461545 103461545 C T COL11A1 Silent p.K765K 0.39 TCGA-UB-A7MB-01 1 103484377 103484377 A T COL11A1 Silent p.P449P 0.50 TCGA-UB-A7MB-01 1 107601021 107601021 T A PRMT6 3'UTR 0.09 TCGA-UB-A7MB-01 1 109171192 109171192 A T FAM102B Silent p.S276S 0.52 TCGA-UB-A7MB-01 1 109321954 109321954 C A STXBP3 Missense_Mutation p.P244H 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-UB-A7MB-01 1 109553760 109553760 T C WDR47 Missense_Mutation p.Q310R 0.38 tolerated(1) benign(0.012) TCGA-UB-A7MB-01 1 109824547 109824547 T G PSRC1 Silent p.P71P 0.37 TCGA-UB-A7MB-01 1 110203962 110203962 A T GSTM4 3'UTR 0.46 TCGA-UB-A7MB-01 1 111216504 111216504 G T KCNA3 Missense_Mutation p.L310M 0.45 deleterious(0) probably_damaging(0.993) TCGA-UB-A7MB-01 1 112305597 112305597 A G DDX20 Missense_Mutation p.Q427R 0.12 tolerated(0.06) benign(0.23) TCGA-UB-A7MB-01 1 114394650 114394650 T G PTPN22 Missense_Mutation p.Q276P 0.35 deleterious(0.03) benign(0.091) TCGA-UB-A7MB-01 1 1146948 1146948 A T TNFRSF4 Missense_Mutation p.L274Q 0.45 deleterious(0) probably_damaging(0.979) TCGA-UB-A7MB-01 1 115218238 115218238 T A AMPD1 Missense_Mutation p.Q564L 0.56 deleterious(0.03) benign(0.375) TCGA-UB-A7MB-01 1 115275369 115275369 T A CSDE1 Missense_Mutation p.K348N 0.47 deleterious(0) possibly_damaging(0.839) TCGA-UB-A7MB-01 1 115829387 115829387 T A NGF Silent p.T10T 0.51 TCGA-UB-A7MB-01 1 11589857 11589857 T C PTCHD2 Silent p.R981R 0.55 TCGA-UB-A7MB-01 1 116244009 116244009 A T CASQ2 Missense_Mutation p.D351E 0.40 tolerated(0.09) benign(0.292) TCGA-UB-A7MB-01 1 116380638 116380638 A T NHLH2 Missense_Mutation p.L119Q 0.37 deleterious(0) probably_damaging(0.993) TCGA-UB-A7MB-01 1 117618107 117618107 A T TTF2 Missense_Mutation p.I301L 0.49 tolerated(0.4) benign(0) TCGA-UB-A7MB-01 1 120284474 120284474 T C PHGDH Missense_Mutation p.V388A 0.35 tolerated(0.17) benign(0.023) TCGA-UB-A7MB-01 1 120336834 120336834 A T REG4 3'UTR 0.39 TCGA-UB-A7MB-01 1 12082339 12082339 A T MIIP Missense_Mutation p.Q101L 0.60 tolerated(0.15) benign(0.082) TCGA-UB-A7MB-01 1 12567012 12567012 A G VPS13D Silent p.L4300L 0.35 TCGA-UB-A7MB-01 1 12855839 12855839 G C PRAMEF1 Silent p.L373L 0.15 TCGA-UB-A7MB-01 1 12921328 12921328 G C PRAMEF2 Silent p.L373L 0.10 TCGA-UB-A7MB-01 1 14149968 14149968 A T PRDM2 3'UTR 0.33 TCGA-UB-A7MB-01 1 1452758 1452758 A G ATAD3A Missense_Mutation p.K165R 0.31 tolerated(0.08) possibly_damaging(0.557) TCGA-UB-A7MB-01 1 145589344 145589344 T C NUDT17 Silent p.G28G 0.28 TCGA-UB-A7MB-01 1 145663367 145663367 G C RNF115 Missense_Mutation p.G143A 0.34 deleterious(0) possibly_damaging(0.798) TCGA-UB-A7MB-01 1 146631058 146631058 C A PRKAB2 3'UTR 0.35 TCGA-UB-A7MB-01 1 146747893 146747893 A T CHD1L Missense_Mutation p.Q504L 0.80 tolerated(0.2) benign(0.001) TCGA-UB-A7MB-01 1 147380840 147380840 A T GJA8 Missense_Mutation p.H253L 0.73 tolerated(0.46) benign(0.306) TCGA-UB-A7MB-01 1 149858769 149858769 G C HIST2H2AC Missense_Mutation p.R82P 0.31 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-UB-A7MB-01 1 150526448 150526448 C A ADAMTSL4 Silent p.R327R 0.27 TCGA-UB-A7MB-01 1 151018276 151018276 A G BNIPL Silent p.L285L 0.36 TCGA-UB-A7MB-01 1 151403269 151403269 T C POGZ Missense_Mutation p.Q111R 0.38 tolerated(0.09) benign(0.41) TCGA-UB-A7MB-01 1 152084202 152084202 G T TCHH Silent p.R497R 0.23 TCGA-UB-A7MB-01 1 152279164 152279164 C A FLG Missense_Mutation p.G2733V 0.09 benign(0.259) TCGA-UB-A7MB-01 1 152286887 152286887 T C FLG Missense_Mutation p.K159E 0.73 benign(0.159) TCGA-UB-A7MB-01 1 152636872 152636872 T C LCE2D Silent p.S97S 0.17 TCGA-UB-A7MB-01 1 152944426 152944426 G T SPRR4 Missense_Mutation p.Q20H 0.79 deleterious_low_confidence(0) unknown(0) TCGA-UB-A7MB-01 1 152957864 152957864 T C SPRR1A Missense_Mutation p.V53A 0.76 tolerated(0.28) possibly_damaging(0.587) TCGA-UB-A7MB-01 1 153085091 153085091 T C SPRR2F Missense_Mutation p.K40R 0.11 unknown(0) TCGA-UB-A7MB-01 1 153661567 153661567 C T NPR1 Silent p.I852I 0.74 TCGA-UB-A7MB-01 1 153782459 153782459 G C GATAD2B 3'UTR 0.22 TCGA-UB-A7MB-01 1 154223688 154223688 C T UBAP2L Missense_Mutation p.S462L 0.06 tolerated(0.23) benign(0.194) TCGA-UB-A7MB-01 1 154294415 154294415 A T AQP10 Missense_Mutation p.T38S 0.16 tolerated(0.08) possibly_damaging(0.697) TCGA-UB-A7MB-01 1 154573591 154573591 T C ADAR Silent p.L509L 0.32 TCGA-UB-A7MB-01 1 155185393 155185393 G C MTX1 3'Flank 0.36 TCGA-UB-A7MB-01 1 155234093 155234093 T A CLK2 Splice_Site p.X382_splice 0.69 TCGA-UB-A7MB-01 1 155451023 155451023 T C ASH1L Silent p.P546P 0.19 TCGA-UB-A7MB-01 1 155838371 155838371 A G SYT11 Missense_Mutation p.K217R 0.34 tolerated(0.06) probably_damaging(0.997) TCGA-UB-A7MB-01 1 156622305 156622305 A T BCAN Silent p.P521P 0.20 TCGA-UB-A7MB-01 1 157488541 157488541 T A FCRL5 Missense_Mutation p.T898S 0.19 deleterious(0.01) benign(0.193) TCGA-UB-A7MB-01 1 157514159 157514159 T A FCRL5 Missense_Mutation p.Q246L 0.72 tolerated(0.22) benign(0.141) TCGA-UB-A7MB-01 1 157803106 157803106 A C CD5L Silent p.V305V 0.68 TCGA-UB-A7MB-01 1 157803162 157803162 A T CD5L Missense_Mutation p.C287S 0.68 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 1 158224355 158224355 G T CD1A 5'UTR 0.31 TCGA-UB-A7MB-01 1 158576643 158576643 A T OR10Z1 Missense_Mutation p.T139S 0.22 tolerated(0.21) benign(0.007) TCGA-UB-A7MB-01 1 158576656 158576656 A T OR10Z1 Missense_Mutation p.Q143L 0.79 tolerated(0.19) benign(0.433) TCGA-UB-A7MB-01 1 158627334 158627334 G A SPTA1 Missense_Mutation p.T913I 0.25 deleterious(0.01) benign(0.312) TCGA-UB-A7MB-01 1 158669603 158669603 T C OR6K2 Silent p.A280A 0.23 TCGA-UB-A7MB-01 1 158669632 158669632 A T OR6K2 Missense_Mutation p.W271R 0.39 tolerated(0.05) probably_damaging(0.962) TCGA-UB-A7MB-01 1 158906729 158906729 T C PYHIN1 Missense_Mutation p.L10P 0.22 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 1 159038418 159038418 T A AIM2 Silent p.A112A 0.68 TCGA-UB-A7MB-01 1 159832326 159832326 T G VSIG8 5'UTR 0.78 TCGA-UB-A7MB-01 1 160097597 160097597 T A ATP1A2 Missense_Mutation p.L335Q 0.72 deleterious(0.01) probably_damaging(0.992) TCGA-UB-A7MB-01 1 160144010 160144010 C A ATP1A4 Missense_Mutation p.P701T 0.72 deleterious(0) possibly_damaging(0.877) TCGA-UB-A7MB-01 1 160582368 160582368 A G SLAMF1 Silent p.P289P 0.68 TCGA-UB-A7MB-01 1 160783584 160783584 T C LY9 Missense_Mutation p.S205P 0.34 tolerated(0.19) benign(0.306) TCGA-UB-A7MB-01 1 160784286 160784286 T G LY9 Silent p.L269L 0.72 TCGA-UB-A7MB-01 1 161044159 161044159 G T PVRL4 Silent p.P335P 0.20 TCGA-UB-A7MB-01 1 161682966 161682966 T A FCRLA Silent p.P315P 0.72 TCGA-UB-A7MB-01 1 167096996 167096996 A T DUSP27 Missense_Mutation p.E876D 0.72 tolerated(0.35) benign(0.001) TCGA-UB-A7MB-01 1 16902790 16902790 T C NBPF1 Silent p.A697A 0.04 TCGA-UB-A7MB-01 1 169521814 169521814 T A F5 Missense_Mutation p.Q426L 0.75 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 1 169586539 169586539 T A SELP Missense_Mutation p.I70F 0.15 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 1 171174726 171174726 T C FMO2 Missense_Mutation p.F379S 0.71 deleterious(0) probably_damaging(0.932) TCGA-UB-A7MB-01 1 171510057 171510057 A T PRRC2C Missense_Mutation p.E1149V 0.23 unknown(0) TCGA-UB-A7MB-01 1 171605647 171605647 G C MYOC Nonsense_Mutation p.Y311* 0.18 TCGA-UB-A7MB-01 1 171759656 171759656 A T METTL13 Silent p.A458A 0.68 TCGA-UB-A7MB-01 1 172007520 172007520 T C DNM3 Missense_Mutation p.L304S 0.23 deleterious(0) probably_damaging(0.997) TCGA-UB-A7MB-01 1 172410778 172410778 T A PIGC 3'UTR 0.77 TCGA-UB-A7MB-01 1 173174577 173174577 T C TNFSF4 Intron 0.60 TCGA-UB-A7MB-01 1 17556654 17556654 A T PADI1 Missense_Mutation p.K335M 0.30 deleterious(0) probably_damaging(0.983) TCGA-UB-A7MB-01 1 177001594 177001594 G A ASTN1 Missense_Mutation p.P288L 0.33 deleterious_low_confidence(0) benign(0.068) TCGA-UB-A7MB-01 1 177226313 177226313 A G BRINP2 Silent p.G154G 0.76 TCGA-UB-A7MB-01 1 177906378 177906378 T C SEC16B Missense_Mutation p.E825G 0.68 deleterious(0.01) possibly_damaging(0.743) TCGA-UB-A7MB-01 1 180953835 180953835 T C STX6 Silent p.A223A 0.66 TCGA-UB-A7MB-01 1 181680158 181680158 A T CACNA1E Missense_Mutation p.Q375L 0.39 deleterious(0) benign(0.069) TCGA-UB-A7MB-01 1 181767600 181767600 A T CACNA1E Missense_Mutation p.E2191V 0.28 tolerated(0.27) benign(0.01) TCGA-UB-A7MB-01 1 183102629 183102629 G T LAMC1 Missense_Mutation p.V1265L 0.28 tolerated(1) benign(0.001) TCGA-UB-A7MB-01 1 185902889 185902889 A T HMCN1 Silent p.G587G 0.23 TCGA-UB-A7MB-01 1 186092186 186092186 A G HMCN1 Silent p.T4111T 0.34 TCGA-UB-A7MB-01 1 186291450 186291450 T A TPR Missense_Mutation p.H2154L 0.21 benign(0.004) TCGA-UB-A7MB-01 1 186324666 186324666 T G TPR Missense_Mutation p.K683Q 0.05 benign(0.403) TCGA-UB-A7MB-01 1 186327705 186327705 C G TPR Missense_Mutation p.M489I 0.66 benign(0.019) TCGA-UB-A7MB-01 1 186645249 186645249 T C PTGS2 Silent p.K346K 0.68 TCGA-UB-A7MB-01 1 186957673 186957673 G T PLA2G4A 3'UTR 0.16 TCGA-UB-A7MB-01 1 19071418 19071418 T G PAX7 Missense_Mutation p.Y505D 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-UB-A7MB-01 1 192627447 192627447 A T RGS13 Missense_Mutation p.R82W 0.73 deleterious(0.02) possibly_damaging(0.695) TCGA-UB-A7MB-01 1 192993077 192993077 C A UCHL5 Splice_Site p.X210_splice 0.34 TCGA-UB-A7MB-01 1 193045014 193045014 A G TROVE2 Silent p.E215E 0.32 TCGA-UB-A7MB-01 1 196714988 196714988 G - CFH Frame_Shift_Del p.D1119Tfs*32 0.44 TCGA-UB-A7MB-01 1 198233311 198233311 A G NEK7 Silent p.E106E 0.82 TCGA-UB-A7MB-01 1 200877954 200877954 C T C1orf106 Missense_Mutation p.P224L 0.08 tolerated(0.69) benign(0.015) TCGA-UB-A7MB-01 1 201330261 201330261 A T TNNT2 Intron 0.92 TCGA-UB-A7MB-01 1 201915517 201915517 G A LMOD1 5'UTR 0.81 TCGA-UB-A7MB-01 1 202287908 202287908 T A LGR6 Missense_Mutation p.L826Q 0.94 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 1 205884091 205884091 A G SLC26A9 Missense_Mutation p.Y865H 0.85 unknown(0) TCGA-UB-A7MB-01 1 205897161 205897161 A T SLC26A9 Missense_Mutation p.S324T 0.87 tolerated(0.41) benign(0.004) TCGA-UB-A7MB-01 1 207741308 207741308 A G CR1 Silent p.G1364G 0.78 TCGA-UB-A7MB-01 1 21013989 21013989 T C KIF17 Silent p.L610L 0.51 TCGA-UB-A7MB-01 1 211447593 211447593 A G RCOR3 Missense_Mutation p.N115D 0.80 deleterious(0.02) probably_damaging(0.994) TCGA-UB-A7MB-01 1 213303010 213303010 G T RPS6KC1 Missense_Mutation p.G205W 0.68 deleterious(0.01) probably_damaging(0.994) TCGA-UB-A7MB-01 1 214818921 214818921 A T CENPF Missense_Mutation p.Q2003L 0.81 benign(0.051) TCGA-UB-A7MB-01 1 216373134 216373134 A T USH2A Missense_Mutation p.Y1216N 0.80 probably_damaging(1) TCGA-UB-A7MB-01 1 22141096 22141096 C A LDLRAD2 Missense_Mutation p.N97K 0.55 tolerated(0.16) possibly_damaging(0.541) TCGA-UB-A7MB-01 1 22303517 22303517 T C CELA3B 5'UTR 0.53 TCGA-UB-A7MB-01 1 22332376 22332376 T A CELA3A Intron 0.26 TCGA-UB-A7MB-01 1 223717520 223717520 C A CAPN8 Missense_Mutation p.Q624H 0.94 benign(0.222) TCGA-UB-A7MB-01 1 226835068 226835068 T A ITPKB Silent p.A682A 0.88 TCGA-UB-A7MB-01 1 228346812 228346812 G A GJC2 3'UTR 0.75 TCGA-UB-A7MB-01 1 228529819 228529819 G T OBSCN Splice_Site p.X6969_splice 0.88 TCGA-UB-A7MB-01 1 229773082 229773082 A T URB2 Missense_Mutation p.S908C 0.93 deleterious(0.05) benign(0.016) TCGA-UB-A7MB-01 1 232577103 232577103 A T SIPA1L2 Silent p.G1192G 1.00 TCGA-UB-A7MB-01 1 233353792 233353792 C A PCNXL2 Missense_Mutation p.Q881H 0.87 tolerated(0.07) benign(0.443) TCGA-UB-A7MB-01 1 235505654 235505654 G A GGPS1 Missense_Mutation p.G157E 0.83 tolerated(0.1) benign(0.359) TCGA-UB-A7MB-01 1 23637344 23637344 C A HNRNPR Missense_Mutation p.R505I 0.29 deleterious(0.05) unknown(0) TCGA-UB-A7MB-01 1 237872815 237872815 A T RYR2 Missense_Mutation p.E3393V 0.69 probably_damaging(0.916) TCGA-UB-A7MB-01 1 2409915 2409915 T C PLCH2 Missense_Mutation p.V15A 0.55 deleterious(0) possibly_damaging(0.615) TCGA-UB-A7MB-01 1 24201051 24201051 T C CNR2 Missense_Mutation p.R353G 0.37 tolerated_low_confidence(0.1) benign(0.001) TCGA-UB-A7MB-01 1 243433405 243433405 A C SDCCAG8 Splice_Site p.X23_splice 0.93 TCGA-UB-A7MB-01 1 245850542 245850542 A T KIF26B Silent p.T1419T 0.76 TCGA-UB-A7MB-01 1 247264199 247264199 C A ZNF669 Missense_Mutation p.G291V 0.69 tolerated(0.05) benign(0.261) TCGA-UB-A7MB-01 1 24996026 24996026 A G SRRM1 Missense_Mutation p.T718A 0.48 benign(0.184) TCGA-UB-A7MB-01 1 26751824 26751824 T A LIN28A Missense_Mutation p.L87M 0.35 deleterious(0) probably_damaging(0.997) TCGA-UB-A7MB-01 1 27177682 27177682 A T ZDHHC18 Missense_Mutation p.H299L 0.40 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 1 27648780 27648780 A T TMEM222 Missense_Mutation p.E31V 0.55 deleterious(0.05) benign(0.022) TCGA-UB-A7MB-01 1 28864505 28864505 A G RCC1 Missense_Mutation p.K449E 0.38 deleterious(0.03) benign(0.007) TCGA-UB-A7MB-01 1 3102902 3102902 T A PRDM16 Missense_Mutation p.F84Y 0.42 tolerated(0.06) benign(0.011) TCGA-UB-A7MB-01 1 31654487 31654487 C A NKAIN1 3'UTR 0.68 TCGA-UB-A7MB-01 1 32124125 32124125 T G COL16A1 Silent p.P1328P 0.43 TCGA-UB-A7MB-01 1 32161363 32161363 T A COL16A1 Missense_Mutation p.E315V 0.45 unknown(0) TCGA-UB-A7MB-01 1 32742349 32742349 A T LCK Missense_Mutation p.Q309L 0.68 deleterious(0) benign(0.171) TCGA-UB-A7MB-01 1 3319469 3319469 T A PRDM16 Missense_Mutation p.L264Q 0.54 deleterious(0.02) probably_damaging(0.984) TCGA-UB-A7MB-01 1 33557811 33557811 A T ADC Missense_Mutation p.H147L 0.41 deleterious(0) probably_damaging(0.969) TCGA-UB-A7MB-01 1 33836103 33836103 A T PHC2 Silent p.A165A 0.40 TCGA-UB-A7MB-01 1 34123600 34123600 A T CSMD2 Missense_Mutation p.C1425S 0.49 deleterious(0) possibly_damaging(0.893) TCGA-UB-A7MB-01 1 34128580 34128580 T A CSMD2 Nonsense_Mutation p.K1349* 0.57 TCGA-UB-A7MB-01 1 34190207 34190207 T A CSMD2 Missense_Mutation p.S892C 0.39 deleterious(0) probably_damaging(0.918) TCGA-UB-A7MB-01 1 34643341 34643341 A T C1orf94 5'UTR 0.44 TCGA-UB-A7MB-01 1 34662932 34662932 G T C1orf94 Nonsense_Mutation p.E143* 0.43 TCGA-UB-A7MB-01 1 35223306 35223306 T A GJB5 Silent p.G125G 0.53 TCGA-UB-A7MB-01 1 35259856 35259856 C A GJA4 Silent p.V14V 0.38 TCGA-UB-A7MB-01 1 36383941 36383941 A G AGO1 Missense_Mutation p.I728V 0.44 tolerated(0.21) benign(0.009) TCGA-UB-A7MB-01 1 36551473 36551473 A T TEKT2 Missense_Mutation p.N107Y 0.39 deleterious(0.01) probably_damaging(0.934) TCGA-UB-A7MB-01 1 36605744 36605744 G C TRAPPC3 Silent p.T22T 0.07 TCGA-UB-A7MB-01 1 3680278 3680278 G T CCDC27 Missense_Mutation p.A444S 0.13 tolerated(0.12) benign(0.03) TCGA-UB-A7MB-01 1 3683112 3683112 G A CCDC27 Missense_Mutation p.R489Q 0.08 deleterious(0) probably_damaging(0.987) TCGA-UB-A7MB-01 1 38288109 38288109 T C MTF1 Missense_Mutation p.E484G 0.52 tolerated(0.18) benign(0.325) TCGA-UB-A7MB-01 1 40769263 40769263 C T COL9A2 Missense_Mutation p.G496D 0.49 deleterious(0) possibly_damaging(0.739) TCGA-UB-A7MB-01 1 40777173 40777173 A G COL9A2 Missense_Mutation p.L173P 0.41 deleterious(0.03) possibly_damaging(0.766) TCGA-UB-A7MB-01 1 40777786 40777786 T A COL9A2 Splice_Site p.X122_splice 0.36 TCGA-UB-A7MB-01 1 41092184 41092184 C T RIMS3 3'UTR 0.53 TCGA-UB-A7MB-01 1 41304266 41304266 T C KCNQ4 3'UTR 0.25 TCGA-UB-A7MB-01 1 41990547 41990547 C T HIVEP3 Missense_Mutation p.G1748S 0.49 probably_damaging(0.999) TCGA-UB-A7MB-01 1 43907744 43907744 C T SZT2 Missense_Mutation p.R2549W 0.11 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 1 43908181 43908181 G T SZT2 Silent p.L2624L 0.39 TCGA-UB-A7MB-01 1 44456201 44456201 A G B4GALT2 3'Flank 0.32 TCGA-UB-A7MB-01 1 44713653 44713653 C A ERI3 Missense_Mutation p.G297C 0.47 tolerated(0.14) probably_damaging(0.91) TCGA-UB-A7MB-01 1 46978226 46978226 C T DMBX1 3'UTR 0.43 TCGA-UB-A7MB-01 1 47717102 47717102 T C STIL Silent p.A1191A 0.51 TCGA-UB-A7MB-01 1 48764441 48764441 T A SPATA6 Missense_Mutation p.R471W 0.28 deleterious(0) probably_damaging(0.994) TCGA-UB-A7MB-01 1 51864724 51864724 T C EPS15 Missense_Mutation p.N678D 0.45 tolerated(0.25) benign(0.001) TCGA-UB-A7MB-01 1 55119680 55119680 A T MROH7 Nonsense_Mutation p.K361* 0.57 TCGA-UB-A7MB-01 1 55174688 55174688 G A MROH7 Silent p.G1223G 0.62 TCGA-UB-A7MB-01 1 5967225 5967225 T A NPHP4 Missense_Mutation p.R521W 0.51 deleterious(0) possibly_damaging(0.753) TCGA-UB-A7MB-01 1 62456026 62456026 A T INADL Missense_Mutation p.E1286V 0.41 deleterious(0) probably_damaging(0.991) TCGA-UB-A7MB-01 1 62733992 62733992 G A KANK4 Missense_Mutation p.P733L 0.43 tolerated(0.13) benign(0.005) TCGA-UB-A7MB-01 1 65142576 65142576 A G CACHD1 Splice_Site p.X941_splice 0.44 TCGA-UB-A7MB-01 1 65852603 65852603 A G DNAJC6 Silent p.L368L 0.39 TCGA-UB-A7MB-01 1 6639185 6639185 C T TAS1R1 Silent p.A689A 0.67 TCGA-UB-A7MB-01 1 67148048 67148048 C T SGIP1 Silent p.T437T 0.38 TCGA-UB-A7MB-01 1 67666515 67666515 T A IL23R Missense_Mutation p.V196D 0.51 deleterious(0) possibly_damaging(0.904) TCGA-UB-A7MB-01 1 68659912 68659912 T A WLS Intron 0.54 TCGA-UB-A7MB-01 1 70502271 70502271 C T LRRC7 Missense_Mutation p.A713V 0.46 tolerated_low_confidence(0.15) benign(0.09) TCGA-UB-A7MB-01 1 70616864 70616864 T G LRRC40 Silent p.P488P 0.41 TCGA-UB-A7MB-01 1 71418661 71418661 T G PTGER3 Silent p.R396R 0.31 TCGA-UB-A7MB-01 1 75065565 75065565 T C C1orf173 Missense_Mutation p.N514D 0.49 tolerated(0.08) benign(0.211) TCGA-UB-A7MB-01 1 75229761 75229761 A G TYW3 Silent p.L248L 0.42 TCGA-UB-A7MB-01 1 7839802 7839802 A G VAMP3 3'UTR 0.27 TCGA-UB-A7MB-01 1 78958355 78958355 A T PTGFR Splice_Site 0.35 TCGA-UB-A7MB-01 1 8390821 8390821 A T SLC45A1 Missense_Mutation p.E423V 0.31 tolerated(0.14) benign(0.004) TCGA-UB-A7MB-01 1 85331282 85331282 A C LPAR3 Silent p.S174S 0.38 TCGA-UB-A7MB-01 1 85647970 85647970 T C SYDE2 Silent p.R785R 0.06 TCGA-UB-A7MB-01 1 86961307 86961307 G T CLCA1 Missense_Mutation p.V688L 0.46 tolerated(1) benign(0.001) TCGA-UB-A7MB-01 1 87046154 87046154 T C CLCA4 3'UTR 0.50 TCGA-UB-A7MB-01 1 91403139 91403139 T A ZNF644 Silent p.T1197T 0.39 TCGA-UB-A7MB-01 1 91405810 91405810 T A ZNF644 Silent p.P367P 0.36 TCGA-UB-A7MB-01 1 91406111 91406111 T A ZNF644 Missense_Mutation p.Q267L 0.51 deleterious(0.01) benign(0.083) TCGA-UB-A7MB-01 1 91859872 91859872 T A HFM1 Missense_Mutation p.Q91L 0.42 deleterious_low_confidence(0.03) benign(0.016) TCGA-UB-A7MB-01 1 92442752 92442752 T C BRDT Silent p.S257S 0.39 TCGA-UB-A7MB-01 1 94586652 94586652 A T ABCA4 5'UTR 0.44 TCGA-UB-A7MB-01 1 9795215 9795215 G A CLSTN1 Missense_Mutation p.T634I 0.41 deleterious(0.02) benign(0.04) TCGA-UB-A7MB-01 1 99771914 99771914 C - LPPR4 Frame_Shift_Del p.S550Afs*9 0.37 TCGA-UB-A7MB-01 20 1162189 1162189 A G TMEM74B Missense_Mutation p.M25T 0.22 deleterious(0.01) probably_damaging(0.995) TCGA-UB-A7MB-01 20 1551660 1551660 A T SIRPB1 Missense_Mutation p.V292E 0.28 tolerated(0.08) benign(0.152) TCGA-UB-A7MB-01 20 16485049 16485049 T A KIF16B Nonsense_Mutation p.R382* 0.46 TCGA-UB-A7MB-01 20 17462786 17462786 C T PCSK2 3'UTR 0.50 TCGA-UB-A7MB-01 20 21369946 21369946 A T XRN2 Silent p.P941P 0.47 TCGA-UB-A7MB-01 20 21492594 21492594 G T NKX2-2 Missense_Mutation p.H263Q 0.47 tolerated(0.22) benign(0.111) TCGA-UB-A7MB-01 20 23586297 23586297 T G CST9 Silent p.R69R 0.48 TCGA-UB-A7MB-01 20 23614426 23614426 T C CST3 Intron 0.64 TCGA-UB-A7MB-01 20 2796253 2796253 T A C20orf141 Silent p.G110G 0.37 TCGA-UB-A7MB-01 20 30102430 30102430 C T HM13 Missense_Mutation p.P26S 0.39 tolerated(0.07) possibly_damaging(0.853) TCGA-UB-A7MB-01 20 30432970 30432970 G A FOXS1 Missense_Mutation p.P126S 0.41 tolerated(0.2) benign(0.021) TCGA-UB-A7MB-01 20 30585087 30585087 A T XKR7 Missense_Mutation p.I523F 0.50 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 20 31604907 31604907 T C BPIFB2 Silent p.I192I 0.26 TCGA-UB-A7MB-01 20 3180750 3180750 T G DDRGK1 Splice_Site p.X137_splice 0.41 TCGA-UB-A7MB-01 20 31827623 31827623 A G BPIFA1 Missense_Mutation p.D112G 0.34 tolerated(0.13) benign(0.02) TCGA-UB-A7MB-01 20 32247787 32247787 C T NECAB3 Missense_Mutation p.A183T 0.37 tolerated(0.54) benign(0.044) TCGA-UB-A7MB-01 20 33714169 33714169 T C EDEM2 Missense_Mutation p.K285R 0.38 tolerated(0.39) benign(0.008) TCGA-UB-A7MB-01 20 33764762 33764762 A G PROCR 3'UTR 0.59 TCGA-UB-A7MB-01 20 33839777 33839777 C A MMP24 Silent p.R155R 0.48 TCGA-UB-A7MB-01 20 34065725 34065725 C G CEP250 Missense_Mutation p.S631R 0.48 benign(0.012) TCGA-UB-A7MB-01 20 35406236 35406236 T C SOGA1 3'UTR 0.28 TCGA-UB-A7MB-01 20 35423004 35423004 T A SOGA1 Splice_Site p.X1161_splice 0.52 TCGA-UB-A7MB-01 20 35802476 35802476 T C MROH8 Missense_Mutation p.S128G 0.39 deleterious_low_confidence(0.02) benign(0.006) TCGA-UB-A7MB-01 20 35879598 35879598 G T GHRH 3'UTR 0.48 TCGA-UB-A7MB-01 20 36956045 36956045 T A BPI Missense_Mutation p.L410H 0.58 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 20 39978721 39978721 C G LPIN3 Silent p.S262S 0.36 TCGA-UB-A7MB-01 20 4168039 4168039 C T SMOX Silent p.F551F 0.43 TCGA-UB-A7MB-01 20 4202598 4202598 A C ADRA1D Missense_Mutation p.W431G 0.24 deleterious(0.01) benign(0.075) TCGA-UB-A7MB-01 20 4228555 4228555 C A ADRA1D Silent p.L350L 0.44 TCGA-UB-A7MB-01 20 42973928 42973928 T A R3HDML Missense_Mutation p.L180Q 0.38 deleterious(0) probably_damaging(0.964) TCGA-UB-A7MB-01 20 43607128 43607128 A T STK4 Missense_Mutation p.Q54L 0.38 deleterious(0.02) benign(0.199) TCGA-UB-A7MB-01 20 43851485 43851485 T C SEMG2 Silent p.N404N 0.43 TCGA-UB-A7MB-01 20 44313307 44313307 T C WFDC10B 3'UTR 0.56 TCGA-UB-A7MB-01 20 44684872 44684872 A G SLC12A5 Silent p.E980E 0.37 TCGA-UB-A7MB-01 20 47675054 47675054 A G CSE1L Silent p.T18T 0.55 TCGA-UB-A7MB-01 20 47879931 47879931 C A ZNFX1 Missense_Mutation p.Q747H 0.37 tolerated(0.22) possibly_damaging(0.764) TCGA-UB-A7MB-01 20 4913132 4913132 T A SLC23A2 Missense_Mutation p.E26V 0.36 deleterious_low_confidence(0.01) benign(0.353) TCGA-UB-A7MB-01 20 50408636 50408636 C A SALL4 Missense_Mutation p.S129I 0.29 tolerated(0.17) benign(0.002) TCGA-UB-A7MB-01 20 50701565 50701565 T G ZFP64 Missense_Mutation p.Q490P 0.44 tolerated(0.17) possibly_damaging(0.718) TCGA-UB-A7MB-01 20 54573533 54573533 C A CBLN4 3'UTR 0.47 TCGA-UB-A7MB-01 20 55047457 55047457 G A RTFDC1 Intron 0.23 TCGA-UB-A7MB-01 20 55071851 55071851 T A GCNT7 Missense_Mutation p.N150Y 0.42 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 20 55072607 55072607 A C GCNT7 5'UTR 0.52 TCGA-UB-A7MB-01 20 55841042 55841042 A G BMP7 Missense_Mutation p.L46P 0.32 deleterious(0) probably_damaging(0.983) TCGA-UB-A7MB-01 20 57246218 57246218 A G STX16 Silent p.T219T 0.35 TCGA-UB-A7MB-01 20 57829806 57829806 A T ZNF831 3'UTR 0.41 TCGA-UB-A7MB-01 20 58349384 58349384 A T PHACTR3 Missense_Mutation p.E338V 0.35 tolerated(0.11) benign(0.019) TCGA-UB-A7MB-01 20 58563998 58563998 A G CDH26 Missense_Mutation p.I355V 0.39 tolerated(0.1) benign(0.144) TCGA-UB-A7MB-01 20 58883542 58883542 C G MIR646 RNA 0.14 TCGA-UB-A7MB-01 20 61867542 61867542 C A BIRC7 Missense_Mutation p.P32T 0.96 tolerated(0.62) benign(0.051) TCGA-UB-A7MB-01 20 633625 633625 T A SRXN1 Missense_Mutation p.I69F 0.33 deleterious(0.01) probably_damaging(0.992) TCGA-UB-A7MB-01 20 744623 744623 C A SLC52A3 Missense_Mutation p.A198S 0.25 tolerated(0.77) benign(0.002) TCGA-UB-A7MB-01 20 8696726 8696726 G C PLCB1 Intron 0.50 TCGA-UB-A7MB-01 20 9449299 9449299 G A PLCB4 Silent p.K1098K 0.31 TCGA-UB-A7MB-01 20 9538336 9538336 T A PAK7 Missense_Mutation p.R554S 0.55 deleterious(0) benign(0.4) TCGA-UB-A7MB-01 20 9546811 9546811 A T PAK7 Missense_Mutation p.L404H 0.41 tolerated(0.55) possibly_damaging(0.514) TCGA-UB-A7MB-01 20 9561478 9561478 T C PAK7 Missense_Mutation p.K102E 0.34 deleterious(0.03) benign(0.138) TCGA-UB-A7MB-01 20 9624845 9624845 T A PAK7 Silent p.A44A 0.41 TCGA-UB-A7MB-01 21 10908836 10908836 A T TPTE Silent p.I503I 0.12 TCGA-UB-A7MB-01 21 10951410 10951410 A T TPTE Missense_Mutation p.L101Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 21 17196476 17196476 A G USP25 Missense_Mutation p.Y400C 0.54 deleterious(0) probably_damaging(0.926) TCGA-UB-A7MB-01 21 19642158 19642158 A G TMPRSS15 3'UTR 0.53 TCGA-UB-A7MB-01 21 19732132 19732132 T C TMPRSS15 Silent p.T274T 0.46 TCGA-UB-A7MB-01 21 22782650 22782650 A G NCAM2 Missense_Mutation p.I418V 0.45 tolerated(1) benign(0.035) TCGA-UB-A7MB-01 21 27062262 27062262 T A JAM2 Missense_Mutation p.V73D 0.79 deleterious(0) probably_damaging(0.998) TCGA-UB-A7MB-01 21 27277345 27277345 T C APP Missense_Mutation p.T652A 0.34 tolerated(0.51) probably_damaging(0.997) TCGA-UB-A7MB-01 21 28306845 28306845 T A ADAMTS5 Silent p.G543G 0.46 TCGA-UB-A7MB-01 21 32253723 32253723 A C KRTAP11-1 Missense_Mutation p.C41G 0.42 tolerated(0.26) benign(0.022) TCGA-UB-A7MB-01 21 33651066 33651066 C T MIS18A Missense_Mutation p.G87D 0.11 deleterious(0.02) benign(0.39) TCGA-UB-A7MB-01 21 35260750 35260750 A T ITSN1 3'UTR 0.36 TCGA-UB-A7MB-01 21 37408515 37408515 A G SETD4 Missense_Mutation p.I408T 0.40 tolerated(0.55) benign(0.004) TCGA-UB-A7MB-01 21 37572789 37572789 A T DOPEY2 Missense_Mutation p.I161F 0.48 tolerated(0.2) benign(0.071) TCGA-UB-A7MB-01 21 37605269 37605269 A G DOPEY2 Missense_Mutation p.S840G 0.46 tolerated(0.06) benign(0.002) TCGA-UB-A7MB-01 21 38555158 38555158 A T TTC3 Missense_Mutation p.Q1567L 0.05 deleterious(0) probably_damaging(0.933) TCGA-UB-A7MB-01 21 40720227 40720227 T A HMGN1 Silent p.A39A 0.43 TCGA-UB-A7MB-01 21 43281737 43281737 T G PRDM15 Missense_Mutation p.M276L 0.36 deleterious_low_confidence(0.04) benign(0) TCGA-UB-A7MB-01 21 45994365 45994365 T C KRTAP10-4 Missense_Mutation p.S244P 0.39 tolerated(0.13) unknown(0) TCGA-UB-A7MB-01 21 46020504 46020504 T G KRTAP10-7 5'UTR 0.55 TCGA-UB-A7MB-01 21 46086475 46086475 C A KRTAP12-2 Missense_Mutation p.C110F 0.33 deleterious(0) probably_damaging(0.99) TCGA-UB-A7MB-01 21 46491927 46491927 T A ADARB1 5'Flank 1.00 TCGA-UB-A7MB-01 21 47552138 47552138 T A COL6A2 Missense_Mutation p.L911Q 0.91 tolerated(0.09) probably_damaging(0.995) TCGA-UB-A7MB-01 21 47686993 47686993 T A MCM3AP Missense_Mutation p.I898F 0.79 deleterious(0.04) benign(0.052) TCGA-UB-A7MB-01 21 47735441 47735441 C T C21orf58 Missense_Mutation p.D131N 0.81 tolerated(0.17) benign(0.262) TCGA-UB-A7MB-01 22 16256547 16256547 A T POTEH 3'UTR 0.08 TCGA-UB-A7MB-01 22 16256669 16256669 A C POTEH 3'UTR 0.07 TCGA-UB-A7MB-01 22 19808139 19808139 T A GNB1L Missense_Mutation p.Q79L 0.41 tolerated(0.25) benign(0.045) TCGA-UB-A7MB-01 22 21088929 21088929 T A PI4KA Intron 0.32 TCGA-UB-A7MB-01 22 21380894 21380894 C A P2RX6 Silent p.S438S 0.37 TCGA-UB-A7MB-01 22 22453392 22453392 T A IGLV8-61 Nonsense_Mutation p.C46* 0.43 TCGA-UB-A7MB-01 22 22892325 22892325 A G PRAME Missense_Mutation p.M259T 0.38 deleterious(0.01) probably_damaging(0.991) TCGA-UB-A7MB-01 22 22899317 22899317 T C PRAME 5'UTR 0.40 TCGA-UB-A7MB-01 22 23101689 23101689 A T IGLV2-14 Missense_Mutation p.S115C 0.37 deleterious_low_confidence(0) possibly_damaging(0.505) TCGA-UB-A7MB-01 22 23922353 23922353 C A IGLL1 Missense_Mutation p.G9C 0.50 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-UB-A7MB-01 22 24177201 24177201 A T DERL3 Intron 0.42 TCGA-UB-A7MB-01 22 24584255 24584255 G A SUSD2 Missense_Mutation p.A802T 0.57 tolerated(0.69) benign(0.001) TCGA-UB-A7MB-01 22 24629889 24629889 A T GGT5 Missense_Mutation p.M86K 0.48 deleterious(0.02) possibly_damaging(0.772) TCGA-UB-A7MB-01 22 25334135 25334135 T A TMEM211 Silent p.P36P 0.31 TCGA-UB-A7MB-01 22 25334227 25334227 A T TMEM211 Missense_Mutation p.W6R 0.48 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 22 25581013 25581013 A G KIAA1671 Missense_Mutation p.S1757G 0.38 deleterious(0) benign(0.082) TCGA-UB-A7MB-01 22 26176138 26176138 A C MYO18B Silent p.T728T 0.38 TCGA-UB-A7MB-01 22 26423048 26423048 A T MYO18B Missense_Mutation p.T2370S 0.45 tolerated(0.26) benign(0.01) TCGA-UB-A7MB-01 22 26688929 26688929 A T SEZ6L Missense_Mutation p.R218W 0.47 deleterious(0.01) possibly_damaging(0.447) TCGA-UB-A7MB-01 22 26849269 26849269 T G HPS4 Missense_Mutation p.Q686P 0.49 deleterious(0) probably_damaging(0.972) TCGA-UB-A7MB-01 22 26995533 26995533 T A CRYBB1 Missense_Mutation p.Q227L 0.42 deleterious(0.02) possibly_damaging(0.866) TCGA-UB-A7MB-01 22 27026355 27026355 A T CRYBA4 Missense_Mutation p.E165D 0.31 deleterious(0) probably_damaging(0.996) TCGA-UB-A7MB-01 22 29130640 29130640 T A CHEK2 Missense_Mutation p.S24C 0.36 tolerated_low_confidence(0.1) benign(0.443) TCGA-UB-A7MB-01 22 31022529 31022529 A T TCN2 3'UTR 0.22 TCGA-UB-A7MB-01 22 31333654 31333654 A G MORC2 Missense_Mutation p.S410P 0.42 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 22 32330093 32330093 G T C22orf24 3'UTR 0.41 TCGA-UB-A7MB-01 22 32828474 32828474 C A BPIFC Missense_Mutation p.E345D 0.46 tolerated(0.08) possibly_damaging(0.489) TCGA-UB-A7MB-01 22 32914296 32914296 A G SYN3 Silent p.P448P 0.48 TCGA-UB-A7MB-01 22 36684453 36684453 C A MYH9 Nonsense_Mutation p.E1593* 0.40 TCGA-UB-A7MB-01 22 36920644 36920644 T A EIF3D Missense_Mutation p.Q102L 0.49 tolerated(0.3) benign(0.034) TCGA-UB-A7MB-01 22 37769351 37769351 T A ELFN2 Missense_Mutation p.T742S 0.41 tolerated(0.48) benign(0.003) TCGA-UB-A7MB-01 22 38318312 38318312 C A MICALL1 Silent p.P301P 0.55 TCGA-UB-A7MB-01 22 38363500 38363500 A G POLR2F Intron 0.50 TCGA-UB-A7MB-01 22 39137564 39137564 C T SUN2 Missense_Mutation p.A382T 0.41 tolerated(0.82) benign(0.005) TCGA-UB-A7MB-01 22 39421150 39421150 A C APOBEC3D Silent p.R96R 0.35 TCGA-UB-A7MB-01 22 39887120 39887120 G A MGAT3 3'UTR 0.59 TCGA-UB-A7MB-01 22 42781111 42781111 A T NFAM1 3'UTR 0.33 TCGA-UB-A7MB-01 22 43459928 43459928 C A TTLL1 Splice_Site p.X213_splice 0.43 TCGA-UB-A7MB-01 22 43555325 43555325 C T TSPO Silent p.H27H 0.11 TCGA-UB-A7MB-01 22 43570530 43570530 T A TTLL12 Missense_Mutation p.N337Y 0.48 tolerated(1) benign(0.004) TCGA-UB-A7MB-01 22 45218295 45218295 A T ARHGAP8 Missense_Mutation p.E266V 0.42 deleterious(0) probably_damaging(0.98) TCGA-UB-A7MB-01 22 45312213 45312213 C A PHF21B Missense_Mutation p.V171L 0.33 tolerated_low_confidence(0.06) benign(0.008) TCGA-UB-A7MB-01 22 45724305 45724305 G T FAM118A Intron 0.36 TCGA-UB-A7MB-01 22 46594241 46594241 G T PPARA Intron 0.49 TCGA-UB-A7MB-01 22 46657787 46657787 A G PKDREJ Missense_Mutation p.L478S 0.46 deleterious(0) probably_damaging(0.997) TCGA-UB-A7MB-01 22 47189485 47189485 C A TBC1D22A Missense_Mutation p.S69R 0.56 deleterious(0.01) probably_damaging(0.999) TCGA-UB-A7MB-01 22 50596795 50596795 C G MOV10L1 Intron 0.27 TCGA-UB-A7MB-01 22 50599429 50599429 A G MOV10L1 Missense_Mutation p.T1167A 0.35 tolerated(0.33) benign(0.003) TCGA-UB-A7MB-01 2 101587535 101587535 A T NPAS2 Missense_Mutation p.K380M 0.38 deleterious(0) benign(0.248) TCGA-UB-A7MB-01 2 101594175 101594175 C G NPAS2 Missense_Mutation p.P466A 0.25 tolerated(0.25) benign(0.006) TCGA-UB-A7MB-01 2 105977641 105977641 T C FHL2 3'UTR 0.19 TCGA-UB-A7MB-01 2 108488783 108488783 A G RGPD4 Silent p.V1441V 0.33 TCGA-UB-A7MB-01 2 109527291 109527291 T A EDAR Missense_Mutation p.H224L 0.51 tolerated(0.17) benign(0.008) TCGA-UB-A7MB-01 2 110053581 110053581 G T SH3RF3 Missense_Mutation p.A603S 0.33 deleterious(0.03) benign(0.115) TCGA-UB-A7MB-01 2 110259210 110259210 A G SH3RF3 Missense_Mutation p.T871A 0.37 deleterious(0) possibly_damaging(0.868) TCGA-UB-A7MB-01 2 113145873 113145873 C T RGPD8 Missense_Mutation p.S1550N 0.36 tolerated(0.08) benign(0.074) TCGA-UB-A7MB-01 2 113518343 113518343 T A CKAP2L Splice_Site p.X35_splice 0.42 TCGA-UB-A7MB-01 2 113593196 113593196 T C IL1B Splice_Site p.X16_splice 0.44 TCGA-UB-A7MB-01 2 11375944 11375944 C T ROCK2 Missense_Mutation p.D203N 0.51 deleterious(0.03) benign(0.278) TCGA-UB-A7MB-01 2 114383213 114383213 T C RABL2A 5'Flank 0.49 TCGA-UB-A7MB-01 2 114399018 114399018 T A RABL2A Missense_Mutation p.N165K 0.31 deleterious(0) probably_damaging(0.938) TCGA-UB-A7MB-01 2 119600649 119600649 C A EN1 Missense_Mutation p.K348N 0.40 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 2 125175023 125175023 T A CNTNAP5 Missense_Mutation p.F129I 0.51 deleterious(0.01) probably_damaging(1) TCGA-UB-A7MB-01 2 130738727 130738727 G C RAB6C 3'UTR 0.33 TCGA-UB-A7MB-01 2 130918769 130918769 T C SMPD4 Missense_Mutation p.H353R 0.39 deleterious(0.04) benign(0.009) TCGA-UB-A7MB-01 2 130939136 130939136 T A SMPD4 Silent p.P13P 0.49 TCGA-UB-A7MB-01 2 131524382 131524382 G T AMER3 3'UTR 0.47 TCGA-UB-A7MB-01 2 131674130 131674130 C A ARHGEF4 5'Flank 0.28 TCGA-UB-A7MB-01 2 131813019 131813019 C T FAM168B Missense_Mutation p.G101S 0.44 tolerated_low_confidence(0.07) probably_damaging(0.999) TCGA-UB-A7MB-01 2 132287511 132287511 A T CCDC74A Intron 0.50 TCGA-UB-A7MB-01 2 132905600 132905600 G T ANKRD30BL 3'UTR 0.49 TCGA-UB-A7MB-01 2 133404017 133404017 T C GPR39 3'UTR 0.38 TCGA-UB-A7MB-01 2 133427569 133427569 T G LYPD1 5'UTR 0.24 TCGA-UB-A7MB-01 2 135781219 135781219 T G MAP3K19 Intron 0.50 TCGA-UB-A7MB-01 2 141528495 141528495 A T LRP1B Missense_Mutation p.C1861S 0.28 benign(0.152) TCGA-UB-A7MB-01 2 149633250 149633250 G A KIF5C Missense_Mutation p.E22K 0.47 deleterious(0) probably_damaging(0.995) TCGA-UB-A7MB-01 2 152466569 152466569 A G NEB Silent p.D4028D 0.41 TCGA-UB-A7MB-01 2 155555145 155555145 A T KCNJ3 5'UTR 0.55 TCGA-UB-A7MB-01 2 15679482 15679482 T A NBAS Splice_Site p.X127_splice 0.36 TCGA-UB-A7MB-01 2 162813739 162813739 A T SLC4A10 Missense_Mutation p.S928C 0.35 deleterious(0) probably_damaging(0.926) TCGA-UB-A7MB-01 2 162851476 162851476 C A DPP4 Missense_Mutation p.A732S 0.48 tolerated(0.09) benign(0.109) TCGA-UB-A7MB-01 2 163361126 163361126 A T KCNH7 Missense_Mutation p.S319T 0.43 deleterious(0.03) possibly_damaging(0.566) TCGA-UB-A7MB-01 2 1667460 1667460 T A PXDN Missense_Mutation p.H495L 0.49 tolerated(0.12) benign(0.151) TCGA-UB-A7MB-01 2 166901779 166901779 A G SCN1A Missense_Mutation p.L479P 0.11 tolerated(0.19) benign(0.333) TCGA-UB-A7MB-01 2 167298134 167298134 T C SCN7A Silent p.A643A 0.45 TCGA-UB-A7MB-01 2 170063518 170063518 C T LRP2 Missense_Mutation p.G2238S 0.44 probably_damaging(0.913) TCGA-UB-A7MB-01 2 170097673 170097673 A G LRP2 Silent p.C1290C 0.49 TCGA-UB-A7MB-01 2 170354147 170354147 A G BBS5 Missense_Mutation p.K210R 0.05 tolerated(0.69) possibly_damaging(0.482) TCGA-UB-A7MB-01 2 170557709 170557709 A T PHOSPHO2 Silent p.P76P 0.47 TCGA-UB-A7MB-01 2 170806488 170806488 T C UBR3 Missense_Mutation p.I1153T 0.43 deleterious(0) possibly_damaging(0.829) TCGA-UB-A7MB-01 2 171243724 171243724 T C MYO3B Missense_Mutation p.Y495H 0.53 deleterious(0) probably_damaging(0.998) TCGA-UB-A7MB-01 2 171260905 171260905 T A MYO3B Missense_Mutation p.L809Q 0.45 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 2 172967349 172967349 A C DLX2 5'UTR 0.36 TCGA-UB-A7MB-01 2 178081594 178081594 A G HNRNPA3 Missense_Mutation p.Y249C 0.44 tolerated(0.11) unknown(0) TCGA-UB-A7MB-01 2 178415920 178415920 A C TTC30B Missense_Mutation p.I524M 0.37 deleterious(0) probably_damaging(0.963) TCGA-UB-A7MB-01 2 179398439 179398439 A T TTN Silent p.G34301G 0.50 TCGA-UB-A7MB-01 2 179401059 179401059 A T TTN Missense_Mutation p.L33472Q 0.64 TCGA-UB-A7MB-01 2 179477140 179477140 A T TTN Silent p.T16704T 0.54 TCGA-UB-A7MB-01 2 179482943 179482943 T A TTN Missense_Mutation p.N15748Y 0.44 TCGA-UB-A7MB-01 2 179584711 179584711 T A TTN Silent p.L7886L 0.38 TCGA-UB-A7MB-01 2 179590678 179590678 C T TTN Missense_Mutation p.E6791K 0.46 TCGA-UB-A7MB-01 2 17959314 17959314 A T GEN1 Silent p.I416I 0.49 TCGA-UB-A7MB-01 2 179594257 179594257 T A TTN Missense_Mutation p.E6209V 0.42 TCGA-UB-A7MB-01 2 179596251 179596251 C A TTN Missense_Mutation p.A5748S 0.42 TCGA-UB-A7MB-01 2 179644181 179644181 A T TTN Missense_Mutation p.H1246Q 0.40 TCGA-UB-A7MB-01 2 180311266 180311266 T A ZNF385B Missense_Mutation p.E301V 0.34 deleterious(0) probably_damaging(0.984) TCGA-UB-A7MB-01 2 182339916 182339916 T G ITGA4 Missense_Mutation p.Y153D 0.43 deleterious(0) probably_damaging(0.921) TCGA-UB-A7MB-01 2 182413408 182413408 T A CERKL Nonsense_Mutation p.K384* 0.42 TCGA-UB-A7MB-01 2 182543118 182543118 A G NEUROD1 Missense_Mutation p.L157P 0.47 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 2 186671974 186671974 A G FSIP2 Missense_Mutation p.K6070E 0.38 probably_damaging(0.91) TCGA-UB-A7MB-01 2 18736712 18736712 T C RDH14 Silent p.T252T 0.45 TCGA-UB-A7MB-01 2 189864285 189864285 T A COL3A1 Silent p.P737P 0.51 TCGA-UB-A7MB-01 2 190927416 190927416 A G MSTN 5'UTR 0.53 TCGA-UB-A7MB-01 2 191523848 191523848 A T NAB1 Intron 0.47 TCGA-UB-A7MB-01 2 192711467 192711467 A T SDPR Missense_Mutation p.L62Q 0.51 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 2 198540055 198540055 A T RFTN2 Missense_Mutation p.F43Y 0.37 deleterious(0.01) probably_damaging(0.941) TCGA-UB-A7MB-01 2 201469552 201469552 A G AOX1 Missense_Mutation p.N268S 0.41 deleterious(0.03) benign(0.364) TCGA-UB-A7MB-01 2 202672587 202672587 A T CDK15 Missense_Mutation p.S94C 0.54 deleterious(0.05) benign(0.012) TCGA-UB-A7MB-01 2 202962302 202962302 T C AC079354.1 Splice_Site p.X276_splice 0.17 TCGA-UB-A7MB-01 2 203834660 203834660 A G CARF Silent p.V324V 0.54 TCGA-UB-A7MB-01 2 204737545 204737545 A G CTLA4 3'UTR 0.52 TCGA-UB-A7MB-01 2 205989084 205989084 G T PARD3B Missense_Mutation p.R400I 0.38 deleterious(0) probably_damaging(0.983) TCGA-UB-A7MB-01 2 207346034 207346034 T C ADAM23 Splice_Site p.X170_splice 0.46 TCGA-UB-A7MB-01 2 207424750 207424750 T A ADAM23 Silent p.I359I 0.34 TCGA-UB-A7MB-01 2 207436495 207436495 G T ADAM23 Silent p.G537G 0.36 TCGA-UB-A7MB-01 2 209047758 209047758 A G C2orf80 Missense_Mutation p.L46S 0.41 deleterious(0) probably_damaging(0.979) TCGA-UB-A7MB-01 2 209345825 209345825 A T PTH2R Nonsense_Mutation p.R338* 0.39 TCGA-UB-A7MB-01 2 210843330 210843330 C A UNC80 Missense_Mutation p.R2940S 0.47 probably_damaging(0.986) TCGA-UB-A7MB-01 2 21231036 21231036 T A APOB Missense_Mutation p.S2902C 0.44 probably_damaging(0.996) TCGA-UB-A7MB-01 2 215813373 215813373 G T ABCA12 Missense_Mutation p.H2351N 0.48 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 2 217124264 217124264 C A MARCH4 Missense_Mutation p.R335L 0.38 tolerated(0.27) benign(0.04) TCGA-UB-A7MB-01 2 218713037 218713037 C A TNS1 Missense_Mutation p.A610S 0.37 tolerated(0.43) benign(0.001) TCGA-UB-A7MB-01 2 219609870 219609870 A T TTLL4 Missense_Mutation p.H567L 0.35 deleterious(0.04) benign(0.021) TCGA-UB-A7MB-01 2 219825484 219825484 C - CDK5R2 Frame_Shift_Del p.H316Tfs*48 0.32 TCGA-UB-A7MB-01 2 220285630 220285630 C A DES Missense_Mutation p.H326Q 0.40 deleterious(0.01) possibly_damaging(0.698) TCGA-UB-A7MB-01 2 220313082 220313082 T A SPEG Missense_Mutation p.L401Q 0.37 possibly_damaging(0.828) TCGA-UB-A7MB-01 2 220342465 220342465 G T SPEG Missense_Mutation p.R1595M 0.39 possibly_damaging(0.627) TCGA-UB-A7MB-01 2 220406616 220406616 T A CHPF Missense_Mutation p.T204S 0.45 tolerated(0.12) benign(0.07) TCGA-UB-A7MB-01 2 223168828 223168828 A T CCDC140 Silent p.P69P 0.50 TCGA-UB-A7MB-01 2 225635277 225635277 A C DOCK10 Missense_Mutation p.L2097W 0.39 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 2 227875174 227875174 G T COL4A4 Silent p.G1459G 0.48 TCGA-UB-A7MB-01 2 228398301 228398301 A T AGFG1 Missense_Mutation p.H308L 0.43 tolerated(0.3) benign(0.269) TCGA-UB-A7MB-01 2 228762991 228762991 A T DAW1 Silent p.A178A 0.36 TCGA-UB-A7MB-01 2 230911189 230911189 G T SLC16A14 Missense_Mutation p.P218Q 0.49 tolerated(0.23) benign(0.004) TCGA-UB-A7MB-01 2 231655654 231655654 A T CAB39 Missense_Mutation p.E61V 0.40 deleterious(0.02) possibly_damaging(0.658) TCGA-UB-A7MB-01 2 231944930 231944930 G A PSMD1 Missense_Mutation p.E439K 0.46 deleterious(0) possibly_damaging(0.714) TCGA-UB-A7MB-01 2 232889007 232889007 A T DIS3L2 Silent p.P77P 0.42 TCGA-UB-A7MB-01 2 233001416 233001416 A G DIS3L2 Missense_Mutation p.N313D 0.49 tolerated(0.13) possibly_damaging(0.549) TCGA-UB-A7MB-01 2 233243486 233243486 T A ALPP 5'UTR 0.41 TCGA-UB-A7MB-01 2 234545950 234545950 A G UGT1A10 Missense_Mutation p.Y261C 0.41 deleterious(0) possibly_damaging(0.755) TCGA-UB-A7MB-01 2 234681206 234681206 G C UGT1A4 3'UTR 0.35 TCGA-UB-A7MB-01 2 234737617 234737617 G T MROH2A Missense_Mutation p.G1449C 0.29 deleterious(0.03) probably_damaging(0.962) TCGA-UB-A7MB-01 2 234978570 234978570 A G SPP2 Splice_Site p.X184_splice 0.50 TCGA-UB-A7MB-01 2 238275483 238275483 A T COL6A3 Missense_Mutation p.S1783T 0.42 possibly_damaging(0.796) TCGA-UB-A7MB-01 2 238303641 238303641 G - COL6A3 Frame_Shift_Del p.Q100Kfs*23 0.30 TCGA-UB-A7MB-01 2 26151786 26151786 A G KIF3C 3'UTR 0.38 TCGA-UB-A7MB-01 2 26699020 26699020 G A OTOF Missense_Mutation p.P948S 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-UB-A7MB-01 2 28817131 28817131 T C PLB1 Intron 0.38 TCGA-UB-A7MB-01 2 29296302 29296302 T A C2orf71 Missense_Mutation p.S276C 0.40 tolerated(0.1) benign(0.067) TCGA-UB-A7MB-01 2 30966296 30966296 T A CAPN13 Silent p.S466S 0.43 TCGA-UB-A7MB-01 2 32726807 32726807 A C BIRC6 Missense_Mutation p.H3020P 0.31 probably_damaging(0.963) TCGA-UB-A7MB-01 2 32750644 32750644 A C BIRC6 Missense_Mutation p.N3957H 0.33 benign(0.079) TCGA-UB-A7MB-01 2 32891805 32891805 A T TTC27 Silent p.P303P 0.52 TCGA-UB-A7MB-01 2 36982076 36982076 T A VIT Missense_Mutation p.D96E 0.40 tolerated(0.09) benign(0.209) TCGA-UB-A7MB-01 2 37035640 37035640 A G VIT Missense_Mutation p.Y472C 0.40 deleterious(0) probably_damaging(0.987) TCGA-UB-A7MB-01 2 38972063 38972063 G A SRSF7 3'UTR 0.41 TCGA-UB-A7MB-01 2 45235999 45235999 T A SIX2 Missense_Mutation p.Q84L 0.33 deleterious(0) probably_damaging(0.992) TCGA-UB-A7MB-01 2 46706740 46706740 A G TMEM247 Missense_Mutation p.R6G 0.41 deleterious_low_confidence(0.02) probably_damaging(0.917) TCGA-UB-A7MB-01 2 47134956 47134956 T C MCFD2 Missense_Mutation p.H101R 0.47 deleterious(0) possibly_damaging(0.897) TCGA-UB-A7MB-01 2 48808054 48808054 C - STON1-GTF2A1L Frame_Shift_Del p.A97Qfs*53 0.31 TCGA-UB-A7MB-01 2 48925836 48925836 T A LHCGR Nonsense_Mutation p.R262* 0.37 TCGA-UB-A7MB-01 2 49190265 49190265 A G FSHR Silent p.S565S 0.46 TCGA-UB-A7MB-01 2 50463975 50463975 C A NRXN1 Silent p.V1206V 0.40 TCGA-UB-A7MB-01 2 54874335 54874335 C A SPTBN1 Missense_Mutation p.A1645E 0.44 tolerated(0.19) possibly_damaging(0.673) TCGA-UB-A7MB-01 2 55479663 55479663 C A MTIF2 Missense_Mutation p.G264V 0.50 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 2 55910944 55910944 T A PNPT1 Silent p.P143P 0.44 TCGA-UB-A7MB-01 2 5838974 5838974 G C SOX11 3'UTR 0.44 TCGA-UB-A7MB-01 2 68962241 68962241 A C ARHGAP25 5'UTR 0.38 TCGA-UB-A7MB-01 2 69043297 69043297 C A ARHGAP25 Intron 0.22 TCGA-UB-A7MB-01 2 69092631 69092631 A C BMP10 3'UTR 0.52 TCGA-UB-A7MB-01 2 69092680 69092680 A G BMP10 3'UTR 0.39 TCGA-UB-A7MB-01 2 69304560 69304560 T C ANTXR1 Silent p.S194S 0.39 TCGA-UB-A7MB-01 2 70903769 70903769 T G ADD2 Intron 0.42 TCGA-UB-A7MB-01 2 71780941 71780941 C T DYSF Silent p.C663C 0.38 TCGA-UB-A7MB-01 2 72692181 72692181 C A EXOC6B Intron 0.41 TCGA-UB-A7MB-01 2 74907007 74907007 G T SEMA4F Nonsense_Mutation p.G662* 0.40 TCGA-UB-A7MB-01 2 75061680 75061680 C T HK2 5'UTR 0.42 TCGA-UB-A7MB-01 2 80529619 80529619 C A LRRTM1 Silent p.V442V 0.39 TCGA-UB-A7MB-01 2 80530967 80530967 A T LRRTM1 5'UTR 0.40 TCGA-UB-A7MB-01 2 84954900 84954900 A G DNAH6 Silent p.R3360R 0.46 TCGA-UB-A7MB-01 2 85024758 85024758 T A DNAH6 Missense_Mutation p.H3819Q 0.58 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 2 89161519 89161519 T C IGKC 5'Flank 0.54 TCGA-UB-A7MB-01 2 89475868 89475868 T G IGKV2-24 Silent p.R102R 0.40 TCGA-UB-A7MB-01 2 95814931 95814931 C A ZNF514 3'UTR 0.46 TCGA-UB-A7MB-01 2 96260836 96260836 G T TRIM43 Missense_Mutation p.K150N 0.39 tolerated(0.08) benign(0.142) TCGA-UB-A7MB-01 2 9668050 9668050 T G ADAM17 Missense_Mutation p.K162Q 0.54 tolerated(0.51) benign(0.216) TCGA-UB-A7MB-01 2 96795631 96795631 G A ASTL Missense_Mutation p.A269V 0.45 tolerated(0.26) possibly_damaging(0.507) TCGA-UB-A7MB-01 2 96966755 96966755 T C SNRNP200 Missense_Mutation p.Q204R 0.39 tolerated(0.59) benign(0.019) TCGA-UB-A7MB-01 2 97757306 97757306 T A FAHD2B Silent p.T46T 0.43 TCGA-UB-A7MB-01 2 97884914 97884914 A T ANKRD36 Missense_Mutation p.T1296S 0.21 deleterious(0.01) probably_damaging(0.983) TCGA-UB-A7MB-01 2 98866838 98866838 C G VWA3B Missense_Mutation p.Q911E 0.49 deleterious(0.01) benign(0.206) TCGA-UB-A7MB-01 2 98994248 98994248 G T CNGA3 Missense_Mutation p.G67V 0.38 deleterious_low_confidence(0.01) benign(0.063) TCGA-UB-A7MB-01 2 99182502 99182502 A G INPP4A Missense_Mutation p.N769D 0.46 deleterious(0.02) probably_damaging(0.998) TCGA-UB-A7MB-01 2 99812077 99812077 A G MRPL30 Missense_Mutation p.E132G 0.46 tolerated(0.05) benign(0.081) TCGA-UB-A7MB-01 3 100964730 100964730 G A IMPG2 Missense_Mutation p.H487Y 0.46 tolerated(0.1) benign(0.011) TCGA-UB-A7MB-01 3 10370618 10370618 T A ATP2B2 Silent p.S1204S 0.47 TCGA-UB-A7MB-01 3 108147647 108147647 T G MYH15 Missense_Mutation p.T1152P 0.46 deleterious(0) possibly_damaging(0.832) TCGA-UB-A7MB-01 3 108149731 108149731 T C MYH15 Missense_Mutation p.E1107G 0.34 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 3 108396342 108396342 A T DZIP3 Splice_Site p.X928_splice 0.47 TCGA-UB-A7MB-01 3 108396438 108396438 A T DZIP3 Missense_Mutation p.E959V 0.44 tolerated(0.05) benign(0.39) TCGA-UB-A7MB-01 3 108572586 108572586 T G TRAT1 Missense_Mutation p.H141Q 0.51 tolerated(0.25) benign(0.032) TCGA-UB-A7MB-01 3 111888053 111888053 T C SLC9C1 Silent p.L1014L 0.37 TCGA-UB-A7MB-01 3 112357721 112357721 A T CCDC80 Silent p.P344P 0.40 TCGA-UB-A7MB-01 3 11303885 11303885 T A HRH1 3'UTR 0.38 TCGA-UB-A7MB-01 3 11304437 11304437 T A HRH1 3'UTR 0.25 TCGA-UB-A7MB-01 3 113092276 113092276 A G WDR52 Missense_Mutation p.I809T 0.43 deleterious(0) possibly_damaging(0.597) TCGA-UB-A7MB-01 3 113524316 113524316 A G ATP6V1A Missense_Mutation p.I569V 0.42 tolerated(0.4) benign(0.001) TCGA-UB-A7MB-01 3 116164004 116164004 G T LSAMP 5'UTR 0.36 TCGA-UB-A7MB-01 3 118870256 118870256 T A C3orf30 3'UTR 0.42 TCGA-UB-A7MB-01 3 119133814 119133814 T A ARHGAP31 Missense_Mutation p.L1013Q 0.36 tolerated(0.07) benign(0.016) TCGA-UB-A7MB-01 3 119886437 119886437 A T GPR156 Silent p.P629P 0.57 TCGA-UB-A7MB-01 3 120871322 120871322 A G STXBP5L Splice_Site p.X224_splice 0.43 TCGA-UB-A7MB-01 3 121263593 121263593 T G POLQ Silent p.G108G 0.42 TCGA-UB-A7MB-01 3 121828150 121828150 T C CD86 Missense_Mutation p.W248R 0.41 deleterious(0) probably_damaging(0.984) TCGA-UB-A7MB-01 3 12209886 12209886 T C SYN2 RNA 0.42 TCGA-UB-A7MB-01 3 122628843 122628843 T C SEMA5B 3'UTR 0.29 TCGA-UB-A7MB-01 3 126219694 126219694 T C UROC1 Missense_Mutation p.D390G 0.40 deleterious(0.02) possibly_damaging(0.905) TCGA-UB-A7MB-01 3 127379659 127379659 A C PODXL2 Missense_Mutation p.Q263P 0.43 tolerated(0.19) benign(0.01) TCGA-UB-A7MB-01 3 12848860 12848860 A C CAND2 Missense_Mutation p.T90P 0.47 deleterious(0.02) benign(0.1) TCGA-UB-A7MB-01 3 128890513 128890513 T A CNBP Nonsense_Mutation p.R30* 0.46 TCGA-UB-A7MB-01 3 130092493 130092493 G A COL6A5 Silent p.L4L 0.39 TCGA-UB-A7MB-01 3 130281939 130281939 T C COL6A6 Missense_Mutation p.L31S 0.53 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 3 130284329 130284329 C A COL6A6 Missense_Mutation p.Q385K 0.45 tolerated(0.21) benign(0.026) TCGA-UB-A7MB-01 3 130714897 130714897 G T ATP2C1 Nonsense_Mutation p.E724* 0.41 TCGA-UB-A7MB-01 3 132153447 132153447 A G DNAJC13 Missense_Mutation p.H18R 0.58 deleterious(0.01) probably_damaging(0.947) TCGA-UB-A7MB-01 3 132948183 132948183 T C TMEM108 Missense_Mutation p.C10R 0.33 deleterious_low_confidence(0.04) probably_damaging(0.983) TCGA-UB-A7MB-01 3 133099726 133099726 A T TMEM108 Missense_Mutation p.R391W 0.45 tolerated_low_confidence(0.11) possibly_damaging(0.614) TCGA-UB-A7MB-01 3 133169265 133169265 T C BFSP2 Missense_Mutation p.V283A 0.41 tolerated(0.33) benign(0.013) TCGA-UB-A7MB-01 3 133372268 133372268 T C TOPBP1 Missense_Mutation p.I281M 0.37 tolerated(0.71) benign(0.002) TCGA-UB-A7MB-01 3 134265095 134265095 G T CEP63 Missense_Mutation p.K298N 0.48 tolerated(0.27) possibly_damaging(0.511) TCGA-UB-A7MB-01 3 13651079 13651079 A G FBLN2 Silent p.G495G 0.43 TCGA-UB-A7MB-01 3 140785585 140785585 G T SPSB4 Silent p.V213V 0.57 TCGA-UB-A7MB-01 3 142122605 142122605 T C XRN1 Missense_Mutation p.K672E 0.40 tolerated(0.27) benign(0.003) TCGA-UB-A7MB-01 3 142253962 142253962 T A ATR Missense_Mutation p.H1302L 0.50 deleterious(0.05) probably_damaging(0.999) TCGA-UB-A7MB-01 3 142281191 142281191 C A ATR Missense_Mutation p.Q351H 0.50 tolerated_low_confidence(0.26) benign(0.013) TCGA-UB-A7MB-01 3 1425084 1425084 G T CNTN6 Missense_Mutation p.G837C 0.57 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 3 14711539 14711539 A T CCDC174 Missense_Mutation p.R351W 0.48 deleterious(0) possibly_damaging(0.869) TCGA-UB-A7MB-01 3 14813588 14813588 T C C3orf20 Missense_Mutation p.V837A 0.42 tolerated(0.46) benign(0.003) TCGA-UB-A7MB-01 3 148460538 148460538 A G AGTR1 3'UTR 0.47 TCGA-UB-A7MB-01 3 148558665 148558665 A T CPB1 Missense_Mutation p.E126V 0.49 tolerated(0.52) benign(0.044) TCGA-UB-A7MB-01 3 149485426 149485426 T C ANKUB1 Silent p.A341A 0.44 TCGA-UB-A7MB-01 3 150396254 150396254 T G FAM194A Missense_Mutation p.Q400P 0.37 deleterious(0.03) possibly_damaging(0.648) TCGA-UB-A7MB-01 3 152554322 152554322 A T P2RY1 Missense_Mutation p.N251Y 0.53 deleterious(0.04) possibly_damaging(0.812) TCGA-UB-A7MB-01 3 152555058 152555058 T A P2RY1 3'UTR 0.51 TCGA-UB-A7MB-01 3 152555312 152555312 G T P2RY1 3'UTR 0.40 TCGA-UB-A7MB-01 3 154145340 154145340 T C GPR149 Missense_Mutation p.Q380R 0.44 tolerated(1) benign(0.002) TCGA-UB-A7MB-01 3 154145356 154145356 T C GPR149 Missense_Mutation p.I375V 0.40 tolerated(0.08) benign(0.009) TCGA-UB-A7MB-01 3 154889935 154889935 C A MME Silent p.G670G 0.46 TCGA-UB-A7MB-01 3 156742645 156742645 A G LEKR1 Missense_Mutation p.I434V 0.35 deleterious(0.03) benign(0.068) TCGA-UB-A7MB-01 3 159976290 159976290 T C IFT80 3'UTR 0.47 TCGA-UB-A7MB-01 3 160156798 160156798 A G TRIM59 Silent p.N58N 0.38 TCGA-UB-A7MB-01 3 164739156 164739156 T C SI Missense_Mutation p.K1039E 0.46 tolerated(0.08) benign(0.005) TCGA-UB-A7MB-01 3 169539921 169539921 A G LRRIQ4 Missense_Mutation p.K71R 0.41 tolerated(1) benign(0.044) TCGA-UB-A7MB-01 3 169664452 169664452 G A RP11-379K17.4 RNA 0.40 TCGA-UB-A7MB-01 3 172643281 172643281 A T SPATA16 Missense_Mutation p.D361E 0.46 deleterious(0.04) possibly_damaging(0.621) TCGA-UB-A7MB-01 3 178984505 178984505 A C KCNMB3 5'UTR 0.11 TCGA-UB-A7MB-01 3 179052271 179052271 A T ZNF639 3'UTR 0.50 TCGA-UB-A7MB-01 3 184009911 184009911 G T ECE2 Missense_Mutation p.S846I 0.24 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 3 184298263 184298263 T A EPHB3 Missense_Mutation p.L749Q 0.43 deleterious(0.01) possibly_damaging(0.698) TCGA-UB-A7MB-01 3 187088757 187088757 A T RTP4 Missense_Mutation p.R113W 0.46 deleterious(0) probably_damaging(0.965) TCGA-UB-A7MB-01 3 189691795 189691795 T A LEPREL1 Splice_Site p.X485_splice 0.44 TCGA-UB-A7MB-01 3 190120151 190120151 G T CLDN16 Missense_Mutation p.W117L 0.34 deleterious(0) probably_damaging(0.996) TCGA-UB-A7MB-01 3 191078935 191078935 A G CCDC50 Missense_Mutation p.E106G 0.41 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 3 192988624 192988624 T C HRASLS 3'UTR 0.64 TCGA-UB-A7MB-01 3 193128796 193128796 A G ATP13A4 Missense_Mutation p.I1091T 0.43 deleterious(0.05) possibly_damaging(0.662) TCGA-UB-A7MB-01 3 193232491 193232491 G T ATP13A4 Missense_Mutation p.T77K 0.42 deleterious(0) probably_damaging(0.976) TCGA-UB-A7MB-01 3 193336697 193336697 G C OPA1 Missense_Mutation p.G199A 0.35 tolerated(0.49) benign(0.001) TCGA-UB-A7MB-01 3 19492664 19492664 A T KCNH8 Silent p.P531P 0.48 TCGA-UB-A7MB-01 3 195306268 195306268 G T APOD Missense_Mutation p.A22E 0.35 tolerated(0.12) unknown(0) TCGA-UB-A7MB-01 3 195511219 195511219 G A MUC4 Missense_Mutation p.T2411I 0.12 unknown(0) TCGA-UB-A7MB-01 3 195594061 195594061 C A TNK2 Intron 0.45 TCGA-UB-A7MB-01 3 196199329 196199329 T C RNF168 Silent p.S359S 0.46 TCGA-UB-A7MB-01 3 19921298 19921298 T C EFHB Splice_Site p.X777_splice 0.52 TCGA-UB-A7MB-01 3 19975568 19975568 G T EFHB 5'UTR 0.30 TCGA-UB-A7MB-01 3 25833109 25833109 G T OXSM Missense_Mutation p.G200C 0.48 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 3 30903131 30903131 A G GADL1 Missense_Mutation p.L55P 0.54 deleterious(0.01) possibly_damaging(0.466) TCGA-UB-A7MB-01 3 33552159 33552159 T C CLASP2 Missense_Mutation p.D1411G 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-UB-A7MB-01 3 36534678 36534678 T C STAC Silent p.N241N 0.52 TCGA-UB-A7MB-01 3 36897302 36897302 T A TRANK1 Missense_Mutation p.E1260V 0.48 deleterious(0.01) probably_damaging(0.993) TCGA-UB-A7MB-01 3 369957 369957 A T CHL1 Missense_Mutation p.H102L 0.50 tolerated(0.14) benign(0.139) TCGA-UB-A7MB-01 3 39374403 39374403 G T CCR8 Missense_Mutation p.W194L 0.42 deleterious(0.01) probably_damaging(0.951) TCGA-UB-A7MB-01 3 40574632 40574632 A G ZNF621 3'UTR 0.42 TCGA-UB-A7MB-01 3 42226292 42226292 A G TRAK1 Missense_Mutation p.E160G 0.49 deleterious(0) probably_damaging(0.944) TCGA-UB-A7MB-01 3 42775068 42775068 T A CCDC13 Missense_Mutation p.S469C 0.46 tolerated(0.12) benign(0.009) TCGA-UB-A7MB-01 3 42956611 42956611 A T ZNF662 Missense_Mutation p.Q375L 0.42 deleterious(0) benign(0.116) TCGA-UB-A7MB-01 3 43122344 43122344 T A POMGNT2 Missense_Mutation p.M194L 0.51 tolerated(0.06) possibly_damaging(0.881) TCGA-UB-A7MB-01 3 43389366 43389366 A G SNRK Missense_Mutation p.S539G 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.779) TCGA-UB-A7MB-01 3 43596767 43596767 T C ANO10 Intron 0.13 TCGA-UB-A7MB-01 3 45046818 45046818 G C EXOSC7 Missense_Mutation p.G176A 0.41 deleterious(0.04) benign(0.41) TCGA-UB-A7MB-01 3 46011256 46011256 T C FYCO1 Missense_Mutation p.R181G 0.50 deleterious(0) possibly_damaging(0.616) TCGA-UB-A7MB-01 3 46415623 46415623 T A CCR5 3'UTR 0.39 TCGA-UB-A7MB-01 3 4699946 4699946 G T ITPR1 Missense_Mutation p.D364Y 0.49 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 3 47651729 47651729 T C SMARCC1 Missense_Mutation p.Q957R 0.47 deleterious(0.03) unknown(0) TCGA-UB-A7MB-01 3 48465277 48465277 T C PLXNB1 Silent p.V248V 0.44 TCGA-UB-A7MB-01 3 49924915 49924915 T A MST1R Missense_Mutation p.Q1343L 0.43 tolerated(0.8) benign(0.001) TCGA-UB-A7MB-01 3 50615001 50615001 A T HEMK1 Missense_Mutation p.Q204L 0.44 tolerated(0.15) benign(0.014) TCGA-UB-A7MB-01 3 52028106 52028106 T C RPL29 Missense_Mutation p.K47E 0.31 deleterious(0.04) benign(0.12) TCGA-UB-A7MB-01 3 52257484 52257484 A G TLR9 Missense_Mutation p.L437P 0.09 deleterious(0.05) probably_damaging(1) TCGA-UB-A7MB-01 3 52471561 52471561 C A SEMA3G Silent p.G620G 0.53 TCGA-UB-A7MB-01 3 52474434 52474434 C A SEMA3G Missense_Mutation p.G368W 0.39 deleterious(0.03) probably_damaging(0.988) TCGA-UB-A7MB-01 3 52538054 52538054 A T STAB1 Missense_Mutation p.R345W 0.54 deleterious(0) possibly_damaging(0.639) TCGA-UB-A7MB-01 3 52860032 52860032 T A ITIH4 Splice_Site p.X211_splice 0.36 TCGA-UB-A7MB-01 3 56697755 56697755 T C FAM208A Intron 0.42 TCGA-UB-A7MB-01 3 62631427 62631427 T C CADPS Missense_Mutation p.Q432R 0.36 tolerated(0.13) benign(0.069) TCGA-UB-A7MB-01 3 64148718 64148718 G T PRICKLE2 Missense_Mutation p.H78N 0.38 tolerated(0.09) benign(0.035) TCGA-UB-A7MB-01 3 67054509 67054509 A T KBTBD8 Missense_Mutation p.K373I 0.52 deleterious(0.03) probably_damaging(0.953) TCGA-UB-A7MB-01 3 77595492 77595492 C T ROBO2 Missense_Mutation p.P329L 0.38 deleterious(0) possibly_damaging(0.713) TCGA-UB-A7MB-01 3 85961527 85961527 A T CADM2 Silent p.V171V 0.46 TCGA-UB-A7MB-01 3 8661623 8661623 A T SSUH2 Nonsense_Mutation p.Y353* 0.42 TCGA-UB-A7MB-01 3 9068619 9068619 C T SRGAP3 Missense_Mutation p.G534R 0.38 deleterious(0) probably_damaging(0.998) TCGA-UB-A7MB-01 3 9068641 9068641 G C SRGAP3 Missense_Mutation p.C526W 0.38 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 3 93754239 93754239 C G ARL13B Missense_Mutation p.L149V 0.41 deleterious(0.03) probably_damaging(0.968) TCGA-UB-A7MB-01 3 98299298 98299298 G A CPOX 3'UTR 0.56 TCGA-UB-A7MB-01 4 103822469 103822469 A T SLC9B1 Silent p.A451A 0.26 TCGA-UB-A7MB-01 4 106888492 106888492 A G NPNT Missense_Mutation p.Q528R 0.52 tolerated(0.3) probably_damaging(0.996) TCGA-UB-A7MB-01 4 107154797 107154797 T A TBCK Missense_Mutation p.H487L 0.47 tolerated(0.06) benign(0.001) TCGA-UB-A7MB-01 4 110745697 110745697 A G GAR1 3'UTR 0.48 TCGA-UB-A7MB-01 4 113303587 113303587 A T ALPK1 Missense_Mutation p.Q52L 0.49 deleterious(0) possibly_damaging(0.756) TCGA-UB-A7MB-01 4 114278661 114278661 A G ANK2 Missense_Mutation p.T2963A 0.45 benign(0.005) TCGA-UB-A7MB-01 4 115858495 115858495 G A NDST4 Silent p.G462G 0.41 TCGA-UB-A7MB-01 4 115997739 115997739 T C NDST4 Missense_Mutation p.K152E 0.36 tolerated(0.06) probably_damaging(0.982) TCGA-UB-A7MB-01 4 119174753 119174753 T A NDST3 Silent p.S833S 0.38 TCGA-UB-A7MB-01 4 119606646 119606646 G C METTL14 5'UTR 0.51 TCGA-UB-A7MB-01 4 119727008 119727008 T C SEC24D Missense_Mutation p.I301M 0.45 deleterious(0.01) benign(0.182) TCGA-UB-A7MB-01 4 119953093 119953093 A T SYNPO2 Missense_Mutation p.T1055S 0.46 tolerated(0.43) benign(0.02) TCGA-UB-A7MB-01 4 122756329 122756329 T C BBS7 Missense_Mutation p.H494R 0.30 deleterious(0) probably_damaging(0.998) TCGA-UB-A7MB-01 4 123113385 123113385 A T KIAA1109 Silent p.G301G 0.50 TCGA-UB-A7MB-01 4 123336766 123336766 T A ADAD1 Silent p.T494T 0.44 TCGA-UB-A7MB-01 4 123859404 123859404 A T SPATA5 Silent p.S486S 0.31 TCGA-UB-A7MB-01 4 126241950 126241950 C A FAT4 Missense_Mutation p.Q1462K 0.10 probably_damaging(0.93) TCGA-UB-A7MB-01 4 126242079 126242079 A T FAT4 Missense_Mutation p.I1505L 0.34 benign(0.002) TCGA-UB-A7MB-01 4 126328165 126328165 T C FAT4 Missense_Mutation p.L1813P 0.15 probably_damaging(0.998) TCGA-UB-A7MB-01 4 126328166 126328166 A T FAT4 Silent p.L1813L 0.15 TCGA-UB-A7MB-01 4 129028654 129028654 A G LARP1B Intron 0.54 TCGA-UB-A7MB-01 4 134084265 134084265 C A PCDH10 Silent p.G977G 0.43 TCGA-UB-A7MB-01 4 140394301 140394301 A G RAB33B 3'UTR 0.30 TCGA-UB-A7MB-01 4 141448650 141448650 T C ELMOD2 Splice_Site p.X57_splice 0.45 TCGA-UB-A7MB-01 4 143007366 143007366 T C INPP4B Silent p.L806L 0.54 TCGA-UB-A7MB-01 4 144133531 144133531 A T USP38 Nonsense_Mutation p.R520* 0.46 TCGA-UB-A7MB-01 4 147860987 147860987 T A TTC29 Nonsense_Mutation p.K21* 0.52 TCGA-UB-A7MB-01 4 153691590 153691590 A G TIGD4 Silent p.Y189Y 0.44 TCGA-UB-A7MB-01 4 153897040 153897040 C A FHDC1 Missense_Mutation p.S866Y 0.48 deleterious(0.03) possibly_damaging(0.659) TCGA-UB-A7MB-01 4 15444181 15444181 C A C1QTNF7 Missense_Mutation p.L217M 0.29 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 4 158262575 158262575 T C GRIA2 Silent p.Y668Y 0.48 TCGA-UB-A7MB-01 4 15850179 15850179 A T CD38 Missense_Mutation p.Q286L 0.33 deleterious(0) possibly_damaging(0.552) TCGA-UB-A7MB-01 4 159174638 159174638 A G TMEM144 Missense_Mutation p.I333V 0.34 tolerated(0.76) benign(0.004) TCGA-UB-A7MB-01 4 16025970 16025970 A T PROM1 Nonsense_Mutation p.Y214* 0.59 TCGA-UB-A7MB-01 4 162954782 162954782 A T FSTL5 Missense_Mutation p.V52D 0.47 tolerated_low_confidence(0.23) benign(0.022) TCGA-UB-A7MB-01 4 167022035 167022035 A T TLL1 3'UTR 0.38 TCGA-UB-A7MB-01 4 169299546 169299546 C A DDX60L Missense_Mutation p.A1482S 0.34 tolerated(0.08) benign(0.196) TCGA-UB-A7MB-01 4 173730577 173730577 A G GALNTL6 Missense_Mutation p.K207E 0.33 tolerated(0.31) benign(0.083) TCGA-UB-A7MB-01 4 175565106 175565106 A T GLRA3 Missense_Mutation p.V409E 0.44 tolerated(0.63) benign(0.017) TCGA-UB-A7MB-01 4 175897487 175897487 A C ADAM29 Missense_Mutation p.K271Q 0.42 tolerated(0.49) benign(0.038) TCGA-UB-A7MB-01 4 175897603 175897603 A T ADAM29 Silent p.P309P 0.36 TCGA-UB-A7MB-01 4 175899050 175899050 C A ADAM29 Missense_Mutation p.P792T 0.27 tolerated(0.09) unknown(0) TCGA-UB-A7MB-01 4 177098697 177098697 A G WDR17 Silent p.L1247L 0.51 TCGA-UB-A7MB-01 4 177608644 177608644 C T VEGFC Missense_Mutation p.G281E 0.37 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 4 17814020 17814020 A C NCAPG Missense_Mutation p.L96F 0.42 deleterious(0.01) benign(0.387) TCGA-UB-A7MB-01 4 183549876 183549876 A T TENM3 Silent p.A274A 0.71 TCGA-UB-A7MB-01 4 187538294 187538294 C T FAT1 Silent p.V2980V 0.73 TCGA-UB-A7MB-01 4 187539226 187539226 T A FAT1 Silent p.S2838S 0.61 TCGA-UB-A7MB-01 4 20591288 20591288 T A SLIT2 Missense_Mutation p.L1037Q 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-UB-A7MB-01 4 23886237 23886237 A C PPARGC1A Intron 0.50 TCGA-UB-A7MB-01 4 24809878 24809878 G A CCDC149 3'UTR 0.45 TCGA-UB-A7MB-01 4 25125535 25125535 G T SEPSECS 3'UTR 0.55 TCGA-UB-A7MB-01 4 30724512 30724512 T C PCDH7 Missense_Mutation p.S490P 0.49 deleterious(0) benign(0.311) TCGA-UB-A7MB-01 4 3189596 3189596 A T HTT Silent p.P1736P 0.71 TCGA-UB-A7MB-01 4 3447852 3447852 A T HGFAC Missense_Mutation p.R396W 0.49 deleterious(0) possibly_damaging(0.45) TCGA-UB-A7MB-01 4 3769799 3769799 T C ADRA2C 3'UTR 0.34 TCGA-UB-A7MB-01 4 37836307 37836307 A G PGM2 Missense_Mutation p.D106G 0.47 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 4 38774823 38774823 C G TLR10 Missense_Mutation p.E797Q 0.27 tolerated_low_confidence(0.19) benign(0.018) TCGA-UB-A7MB-01 4 41270126 41270126 T C UCHL1 3'UTR 0.50 TCGA-UB-A7MB-01 4 4199319 4199319 A T OTOP1 Nonsense_Mutation p.C414* 0.53 TCGA-UB-A7MB-01 4 42403330 42403330 C A SHISA3 Silent p.P193P 0.48 TCGA-UB-A7MB-01 4 42446619 42446619 T C ATP8A1 Silent p.G997G 0.43 TCGA-UB-A7MB-01 4 43022411 43022411 T A GRXCR1 Missense_Mutation p.L223Q 0.40 deleterious(0) probably_damaging(0.998) TCGA-UB-A7MB-01 4 4304686 4304686 A G ZBTB49 Missense_Mutation p.R375G 0.33 tolerated(0.26) benign(0.104) TCGA-UB-A7MB-01 4 436177 436177 T C ZNF721 Silent p.G693G 0.33 TCGA-UB-A7MB-01 4 46066495 46066495 G T GABRG1 Silent p.P196P 0.41 TCGA-UB-A7MB-01 4 46099287 46099287 C A GABRG1 Nonsense_Mutation p.G62* 0.52 TCGA-UB-A7MB-01 4 52890300 52890300 A C SGCB Silent p.S260S 0.41 TCGA-UB-A7MB-01 4 53786893 53786893 T A SCFD2 Missense_Mutation p.Q569L 0.28 deleterious(0.02) probably_damaging(0.995) TCGA-UB-A7MB-01 4 54140025 54140025 T A SCFD2 Missense_Mutation p.N427Y 0.39 deleterious(0.01) possibly_damaging(0.863) TCGA-UB-A7MB-01 4 55138653 55138653 G C PDGFRA Missense_Mutation p.D444H 0.50 tolerated(0.26) benign(0.176) TCGA-UB-A7MB-01 4 55971025 55971025 A C KDR Missense_Mutation p.L591R 0.38 tolerated(0.18) benign(0.094) TCGA-UB-A7MB-01 4 55984967 55984967 C T KDR Silent p.R54R 0.51 TCGA-UB-A7MB-01 4 62758609 62758609 A T LPHN3 Silent p.R504R 0.45 TCGA-UB-A7MB-01 4 656968 656968 T A PDE6B Missense_Mutation p.S638T 0.31 tolerated(0.31) benign(0.013) TCGA-UB-A7MB-01 4 68506897 68506897 T C UBA6 Missense_Mutation p.Q509R 0.54 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 4 68789885 68789885 C A TMPRSS11A Splice_Site p.X164_splice 0.30 TCGA-UB-A7MB-01 4 71113535 71113535 G T CSN3 Missense_Mutation p.A19S 0.30 tolerated(0.07) benign(0.048) TCGA-UB-A7MB-01 4 71629350 71629350 A T RUFY3 Missense_Mutation p.E145V 0.51 deleterious(0) possibly_damaging(0.796) TCGA-UB-A7MB-01 4 72994372 72994372 A T NPFFR2 Missense_Mutation p.T124S 0.47 tolerated(0.23) benign(0.376) TCGA-UB-A7MB-01 4 73414452 73414452 T C ADAMTS3 Missense_Mutation p.N83D 0.44 deleterious(0) probably_damaging(0.988) TCGA-UB-A7MB-01 4 74735406 74735406 C A CXCL1 Missense_Mutation p.L41M 0.40 deleterious(0) probably_damaging(0.976) TCGA-UB-A7MB-01 4 74847688 74847688 A T PF4 5'UTR 0.45 TCGA-UB-A7MB-01 4 76489571 76489571 T G C4orf26 Missense_Mutation p.I120S 0.37 deleterious_low_confidence(0.03) benign(0.402) TCGA-UB-A7MB-01 4 7730109 7730109 A G SORCS2 Missense_Mutation p.K968E 0.40 tolerated(0.11) benign(0.003) TCGA-UB-A7MB-01 4 79229364 79229364 G T FRAS1 Splice_Site p.X560_splice 0.37 TCGA-UB-A7MB-01 4 79285157 79285157 A T FRAS1 Missense_Mutation p.S891C 0.42 possibly_damaging(0.572) TCGA-UB-A7MB-01 4 79393452 79393452 A T FRAS1 Missense_Mutation p.Q2497L 0.44 benign(0.002) TCGA-UB-A7MB-01 4 79458286 79458286 T A FRAS1 Missense_Mutation p.Y3744N 0.35 probably_damaging(0.996) TCGA-UB-A7MB-01 4 80899212 80899212 T A ANTXR2 Silent p.R432R 0.34 TCGA-UB-A7MB-01 4 85692 85692 A G Z95704.2 RNA 0.53 TCGA-UB-A7MB-01 4 86916311 86916311 A T ARHGAP24 Missense_Mutation p.S502C 0.35 tolerated(0.2) benign(0.005) TCGA-UB-A7MB-01 4 91549369 91549369 A G CCSER1 Missense_Mutation p.R640G 0.55 deleterious(0) probably_damaging(0.996) TCGA-UB-A7MB-01 4 94436432 94436432 A G GRID2 Missense_Mutation p.Y688C 0.51 deleterious(0.01) probably_damaging(0.998) TCGA-UB-A7MB-01 4 94750985 94750985 C A ATOH1 Missense_Mutation p.T303K 0.51 deleterious(0.01) possibly_damaging(0.535) TCGA-UB-A7MB-01 5 102612615 102612615 A T C5orf30 3'UTR 0.61 TCGA-UB-A7MB-01 5 102613045 102613045 C A C5orf30 3'UTR 0.39 TCGA-UB-A7MB-01 5 1053467 1053467 T A SLC12A7 Missense_Mutation p.N1053Y 0.45 tolerated(0.13) probably_damaging(0.954) TCGA-UB-A7MB-01 5 109904164 109904164 G A TMEM232 Missense_Mutation p.A480V 0.19 deleterious(0) probably_damaging(0.966) TCGA-UB-A7MB-01 5 110430616 110430616 A T WDR36 Splice_Site p.X111_splice 0.57 TCGA-UB-A7MB-01 5 11098804 11098804 C A CTNND2 Missense_Mutation p.M840I 0.43 deleterious(0) possibly_damaging(0.744) TCGA-UB-A7MB-01 5 11117662 11117662 C A CTNND2 Missense_Mutation p.G726V 0.37 deleterious(0) probably_damaging(0.979) TCGA-UB-A7MB-01 5 112769360 112769360 C T TSSK1B 3'UTR 0.56 TCGA-UB-A7MB-01 5 120022245 120022245 T C PRR16 Silent p.P229P 0.28 TCGA-UB-A7MB-01 5 121362887 121362887 A T SRFBP1 3'UTR 0.59 TCGA-UB-A7MB-01 5 121780395 121780395 T C SNCAIP Silent p.S520S 0.38 TCGA-UB-A7MB-01 5 123983650 123983650 T C ZNF608 Silent p.K809K 0.29 TCGA-UB-A7MB-01 5 1254534 1254534 G A TERT Silent p.L1082L 0.43 TCGA-UB-A7MB-01 5 127609596 127609596 T G FBN2 Silent p.P2592P 0.54 TCGA-UB-A7MB-01 5 127653902 127653902 A G FBN2 Silent p.G1552G 0.52 TCGA-UB-A7MB-01 5 131066598 131066598 T A FNIP1 Missense_Mutation p.Q118L 0.41 deleterious(0) probably_damaging(0.992) TCGA-UB-A7MB-01 5 131607517 131607517 T A PDLIM4 Missense_Mutation p.L235H 0.30 deleterious(0) possibly_damaging(0.695) TCGA-UB-A7MB-01 5 133451714 133451714 A T TCF7 Missense_Mutation p.Q144L 0.47 tolerated(0.69) possibly_damaging(0.888) TCGA-UB-A7MB-01 5 133644327 133644327 T A CDKL3 Missense_Mutation p.R325W 0.55 deleterious(0.02) benign(0.375) TCGA-UB-A7MB-01 5 134109540 134109540 A G DDX46 Missense_Mutation p.E201G 0.59 deleterious(0) probably_damaging(0.979) TCGA-UB-A7MB-01 5 136314325 136314325 T A SPOCK1 3'UTR 0.26 TCGA-UB-A7MB-01 5 138723388 138723388 T A MZB1 3'UTR 0.60 TCGA-UB-A7MB-01 5 138760775 138760775 T C DNAJC18 Silent p.T196T 0.51 TCGA-UB-A7MB-01 5 138837135 138837135 G T ECSCR Missense_Mutation p.T71N 0.61 tolerated(0.07) possibly_damaging(0.607) TCGA-UB-A7MB-01 5 139193135 139193135 T A PSD2 Missense_Mutation p.F205I 0.62 tolerated(0.4) benign(0) TCGA-UB-A7MB-01 5 140056273 140056273 T C HARS Missense_Mutation p.E387G 0.37 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 5 140180880 140180880 A T PCDHA3 Missense_Mutation p.Y33F 0.52 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-UB-A7MB-01 5 140215472 140215472 C G PCDHA7 Missense_Mutation p.R502G 0.28 deleterious_low_confidence(0.02) benign(0.413) TCGA-UB-A7MB-01 5 140237048 140237048 A T PCDHA10 Missense_Mutation p.H472L 0.93 deleterious_low_confidence(0.01) benign(0.271) TCGA-UB-A7MB-01 5 140237342 140237342 G T PCDHA10 Missense_Mutation p.G570V 0.90 tolerated_low_confidence(0.07) benign(0.064) TCGA-UB-A7MB-01 5 140257188 140257188 C T PCDHA12 Silent p.L711L 0.52 TCGA-UB-A7MB-01 5 140263324 140263324 T A PCDHA13 Missense_Mutation p.S491T 0.51 tolerated_low_confidence(0.06) benign(0.07) TCGA-UB-A7MB-01 5 140474700 140474700 A T PCDHB2 Missense_Mutation p.Q109L 0.53 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-UB-A7MB-01 5 140480277 140480277 T C PCDHB3 Missense_Mutation p.L15S 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.873) TCGA-UB-A7MB-01 5 140564792 140564792 G T PCDHB16 3'UTR 0.39 TCGA-UB-A7MB-01 5 140572209 140572209 T C PCDHB10 Silent p.S28S 0.52 TCGA-UB-A7MB-01 5 140725276 140725276 C T PCDHGA3 Missense_Mutation p.A559V 0.38 tolerated_low_confidence(0.33) benign(0.01) TCGA-UB-A7MB-01 5 140751344 140751344 A T PCDHGB3 Silent p.V461V 0.50 TCGA-UB-A7MB-01 5 140793269 140793269 T A PCDHGA10 Missense_Mutation p.L176H 0.62 deleterious_low_confidence(0) probably_damaging(1) TCGA-UB-A7MB-01 5 140794504 140794504 C T PCDHGA10 Missense_Mutation p.P588S 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.651) TCGA-UB-A7MB-01 5 140856012 140856012 T C PCDHGC3 Missense_Mutation p.L110S 0.65 deleterious(0.01) possibly_damaging(0.849) TCGA-UB-A7MB-01 5 1414820 1414820 T C SLC6A3 Missense_Mutation p.D381G 0.44 deleterious(0.01) benign(0.278) TCGA-UB-A7MB-01 5 148206948 148206948 A G ADRB2 Missense_Mutation p.Y185C 0.36 deleterious(0) probably_damaging(0.994) TCGA-UB-A7MB-01 5 148406142 148406142 T A SH3TC2 Missense_Mutation p.T1016S 0.46 deleterious(0.01) possibly_damaging(0.542) TCGA-UB-A7MB-01 5 149011823 149011823 A T ARHGEF37 3'UTR 0.27 TCGA-UB-A7MB-01 5 149602599 149602599 C T CAMK2A Nonsense_Mutation p.W473* 0.50 TCGA-UB-A7MB-01 5 150704910 150704910 A T SLC36A2 Missense_Mutation p.L316Q 0.42 deleterious(0) probably_damaging(0.995) TCGA-UB-A7MB-01 5 150945854 150945854 T G FAT2 Missense_Mutation p.H880P 0.38 benign(0.001) TCGA-UB-A7MB-01 5 150946124 150946124 A G FAT2 Missense_Mutation p.V790A 0.49 benign(0.078) TCGA-UB-A7MB-01 5 154200873 154200873 G A FAXDC2 Silent p.G264G 0.49 TCGA-UB-A7MB-01 5 154287223 154287223 T C GEMIN5 Missense_Mutation p.N775D 0.30 tolerated(0.11) possibly_damaging(0.885) TCGA-UB-A7MB-01 5 154317547 154317547 T C GEMIN5 Silent p.P49P 0.46 TCGA-UB-A7MB-01 5 156485027 156485027 T C HAVCR1 5'UTR 0.39 TCGA-UB-A7MB-01 5 156593123 156593123 A T FAM71B Missense_Mutation p.S19R 0.41 deleterious(0) benign(0.222) TCGA-UB-A7MB-01 5 157065688 157065688 T A SOX30 Missense_Mutation p.Q477L 0.51 deleterious(0) possibly_damaging(0.859) TCGA-UB-A7MB-01 5 159519900 159519900 T A PWWP2A Missense_Mutation p.D586V 0.38 deleterious(0) probably_damaging(0.928) TCGA-UB-A7MB-01 5 159519933 159519933 G C PWWP2A Missense_Mutation p.S575C 0.42 tolerated(0.07) benign(0.005) TCGA-UB-A7MB-01 5 160753450 160753450 A G GABRB2 Silent p.Y372Y 0.29 TCGA-UB-A7MB-01 5 163383 163383 A T PLEKHG4B Missense_Mutation p.T710S 0.76 tolerated(0.65) benign(0.012) TCGA-UB-A7MB-01 5 16711259 16711259 G T MYO10 Silent p.V675V 0.58 TCGA-UB-A7MB-01 5 168093426 168093426 A T SLIT3 3'UTR 0.50 TCGA-UB-A7MB-01 5 169122911 169122911 G T DOCK2 Silent p.T316T 0.28 TCGA-UB-A7MB-01 5 169144485 169144485 A T DOCK2 Missense_Mutation p.Y710F 0.56 deleterious(0.01) benign(0.396) TCGA-UB-A7MB-01 5 169188534 169188534 A C DOCK2 Missense_Mutation p.Y820S 0.38 tolerated(0.42) benign(0.004) TCGA-UB-A7MB-01 5 169675517 169675517 A T LCP2 3'UTR 0.64 TCGA-UB-A7MB-01 5 172744894 172744894 C A STC2 Nonsense_Mutation p.E289* 0.45 TCGA-UB-A7MB-01 5 173316557 173316557 A T CPEB4 5'UTR 0.53 TCGA-UB-A7MB-01 5 176637954 176637954 A G NSD1 Missense_Mutation p.I852V 0.48 deleterious_low_confidence(0.04) possibly_damaging(0.729) TCGA-UB-A7MB-01 5 176814993 176814993 A T SLC34A1 Splice_Site p.X215_splice 0.54 TCGA-UB-A7MB-01 5 177474024 177474024 A T FAM153C Intron 0.31 TCGA-UB-A7MB-01 5 178359135 178359135 A G ZFP2 Missense_Mutation p.Q274R 0.59 deleterious(0.01) benign(0.049) TCGA-UB-A7MB-01 5 178359761 178359761 T C ZFP2 3'UTR 0.22 TCGA-UB-A7MB-01 5 178369717 178369717 C A ZNF454 5'UTR 0.61 TCGA-UB-A7MB-01 5 178566986 178566986 C G ADAMTS2 Silent p.R560R 0.47 TCGA-UB-A7MB-01 5 180037027 180037027 T A FLT4 Splice_Site p.X1229_splice 0.36 TCGA-UB-A7MB-01 5 180278100 180278100 T A ZFP62 Missense_Mutation p.Q132L 0.29 deleterious(0.01) benign(0) TCGA-UB-A7MB-01 5 180661725 180661725 C A TRIM41 Missense_Mutation p.P615T 0.31 deleterious(0) probably_damaging(0.997) TCGA-UB-A7MB-01 5 1878691 1878691 C A IRX4 Nonsense_Mutation p.E318* 0.50 TCGA-UB-A7MB-01 5 31313451 31313451 T C CDH6 Missense_Mutation p.M427T 0.35 tolerated(0.23) benign(0.237) TCGA-UB-A7MB-01 5 33527288 33527288 T A ADAMTS12 3'UTR 0.31 TCGA-UB-A7MB-01 5 34880306 34880306 A G TTC23L Missense_Mutation p.I324V 0.47 tolerated(0.49) benign(0.014) TCGA-UB-A7MB-01 5 35618067 35618067 C A SPEF2 5'UTR 0.38 TCGA-UB-A7MB-01 5 35709050 35709050 T A SPEF2 Missense_Mutation p.V889D 0.38 tolerated(0.29) possibly_damaging(0.467) TCGA-UB-A7MB-01 5 41058297 41058297 G A MROH2B Silent p.S208S 0.08 TCGA-UB-A7MB-01 5 41143008 41143008 T A C6 Silent p.T908T 0.41 TCGA-UB-A7MB-01 5 52369005 52369005 G A ITGA2 Silent p.L829L 0.39 TCGA-UB-A7MB-01 5 54281099 54281099 A C ESM1 Missense_Mutation p.C83G 0.57 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 5 54763943 54763943 T A PPAP2A Missense_Mutation p.N83I 0.37 tolerated(0.19) possibly_damaging(0.715) TCGA-UB-A7MB-01 5 57750329 57750329 T A PLK2 3'UTR 0.59 TCGA-UB-A7MB-01 5 57750786 57750786 T A PLK2 Silent p.L606L 0.42 TCGA-UB-A7MB-01 5 61811284 61811284 A G IPO11 Missense_Mutation p.M658V 0.46 deleterious(0) benign(0.204) TCGA-UB-A7MB-01 5 6312538 6312538 T A CTD-2324F15.2 RNA 0.48 TCGA-UB-A7MB-01 5 68423913 68423913 A G SLC30A5 Missense_Mutation p.H694R 0.42 deleterious(0.01) benign(0.023) TCGA-UB-A7MB-01 5 71494454 71494454 G C MAP1B Missense_Mutation p.D1758H 0.36 probably_damaging(0.976) TCGA-UB-A7MB-01 5 72742686 72742686 T A FOXD1 3'UTR 0.20 TCGA-UB-A7MB-01 5 7817092 7817092 G C ADCY2 Silent p.V999V 0.39 TCGA-UB-A7MB-01 5 78532433 78532433 G A JMY 5'UTR 0.38 TCGA-UB-A7MB-01 5 7878172 7878172 G T MTRR Missense_Mutation p.A200S 0.51 tolerated(0.69) benign(0.008) TCGA-UB-A7MB-01 5 80363997 80363997 A T RASGRF2 Missense_Mutation p.E181V 0.69 deleterious(0) probably_damaging(0.939) TCGA-UB-A7MB-01 5 82491711 82491711 A T XRCC4 Missense_Mutation p.K146N 0.66 deleterious(0) probably_damaging(0.989) TCGA-UB-A7MB-01 5 82937305 82937305 A C HAPLN1 3'UTR 0.42 TCGA-UB-A7MB-01 5 878542 878542 T A BRD9 Missense_Mutation p.D400V 0.21 deleterious(0) benign(0.176) TCGA-UB-A7MB-01 5 90055290 90055290 A G GPR98 Missense_Mutation p.N4002S 0.33 benign(0.002) TCGA-UB-A7MB-01 5 90059134 90059134 G A GPR98 Missense_Mutation p.E4045K 0.40 possibly_damaging(0.874) TCGA-UB-A7MB-01 5 90077396 90077396 G T GPR98 Splice_Site p.X4411_splice 0.33 TCGA-UB-A7MB-01 5 901481 901481 T G TRIP13 Nonsense_Mutation p.L157* 0.44 TCGA-UB-A7MB-01 6 101173567 101173567 T G ASCC3 Missense_Mutation p.T584P 0.13 deleterious(0) probably_damaging(0.977) TCGA-UB-A7MB-01 6 10415374 10415374 A G TFAP2A 5'UTR 0.39 TCGA-UB-A7MB-01 6 105572512 105572512 T A BVES Silent p.R186R 0.36 TCGA-UB-A7MB-01 6 107390413 107390413 T C BEND3 Missense_Mutation p.H661R 0.45 tolerated(0.29) possibly_damaging(0.451) TCGA-UB-A7MB-01 6 110522886 110522886 A G CDC40 Silent p.T134T 0.49 TCGA-UB-A7MB-01 6 111587672 111587672 A G KIAA1919 Missense_Mutation p.I303V 0.49 tolerated(0.77) benign(0.02) TCGA-UB-A7MB-01 6 111587712 111587712 A G KIAA1919 Missense_Mutation p.D316G 0.45 tolerated(0.07) benign(0.11) TCGA-UB-A7MB-01 6 112671556 112671556 G - RFPL4B Frame_Shift_Del p.E216Kfs*44 0.33 TCGA-UB-A7MB-01 6 116747748 116747748 A G DSE Missense_Mutation p.D143G 0.16 tolerated(0.1) probably_damaging(0.998) TCGA-UB-A7MB-01 6 116973312 116973312 T A ZUFSP Silent p.T335T 0.30 TCGA-UB-A7MB-01 6 117047735 117047735 A T KPNA5 Silent p.A401A 0.49 TCGA-UB-A7MB-01 6 117114124 117114124 T A GPRC6A Silent p.P654P 0.52 TCGA-UB-A7MB-01 6 117609770 117609770 T G ROS1 Missense_Mutation p.H2310P 0.45 tolerated_low_confidence(0.06) benign(0.004) TCGA-UB-A7MB-01 6 121447529 121447529 T C TBC1D32 Missense_Mutation p.Y993C 0.57 deleterious(0.01) possibly_damaging(0.905) TCGA-UB-A7MB-01 6 121563461 121563461 T A TBC1D32 Missense_Mutation p.L681F 0.46 deleterious(0) probably_damaging(0.998) TCGA-UB-A7MB-01 6 121770871 121770871 A G GJA1 3'UTR 0.36 TCGA-UB-A7MB-01 6 12749960 12749960 T A PHACTR1 Missense_Mutation p.V63E 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.607) TCGA-UB-A7MB-01 6 127837007 127837007 T A SOGA3 Missense_Mutation p.K251N 0.46 deleterious_low_confidence(0) benign(0.403) TCGA-UB-A7MB-01 6 128150865 128150865 T G THEMIS Silent p.A155A 0.44 TCGA-UB-A7MB-01 6 129498936 129498936 G T LAMA2 Silent p.P464P 0.41 TCGA-UB-A7MB-01 6 129618940 129618940 T A LAMA2 Silent p.P989P 0.52 TCGA-UB-A7MB-01 6 129636779 129636779 A T LAMA2 Silent p.P1238P 0.39 TCGA-UB-A7MB-01 6 129823895 129823895 A T LAMA2 Missense_Mutation p.D2779V 0.40 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 6 130497042 130497042 T C SAMD3 Missense_Mutation p.T256A 0.34 tolerated(0.05) benign(0.066) TCGA-UB-A7MB-01 6 13160509 13160509 T C PHACTR1 Silent p.Y163Y 0.26 TCGA-UB-A7MB-01 6 134638546 134638546 T C SGK1 Missense_Mutation p.Q18R 0.40 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-UB-A7MB-01 6 136599666 136599666 C T BCLAF1 Missense_Mutation p.R118K 0.25 deleterious_low_confidence(0.01) unknown(0) TCGA-UB-A7MB-01 6 137245642 137245642 T A SLC35D3 Silent p.G353G 0.36 TCGA-UB-A7MB-01 6 13791091 13791091 T C MCUR1 Missense_Mutation p.I344V 0.41 tolerated(1) benign(0.009) TCGA-UB-A7MB-01 6 139164260 139164260 A G ECT2L Missense_Mutation p.T163A 0.31 tolerated(0.09) benign(0.005) TCGA-UB-A7MB-01 6 143095904 143095904 T A HIVEP2 5'UTR 0.43 TCGA-UB-A7MB-01 6 144509159 144509159 A G STX11 3'UTR 0.40 TCGA-UB-A7MB-01 6 146276324 146276324 T A SHPRH Silent p.P45P 0.41 TCGA-UB-A7MB-01 6 148848610 148848610 T C SASH1 Missense_Mutation p.Y436H 0.43 tolerated(0.1) probably_damaging(0.999) TCGA-UB-A7MB-01 6 148864814 148864814 A T SASH1 Splice_Site p.X737_splice 0.36 TCGA-UB-A7MB-01 6 149795738 149795738 T G ZC3H12D 5'UTR 0.41 TCGA-UB-A7MB-01 6 151687080 151687080 T G ZBTB2 Missense_Mutation p.Q374P 0.47 deleterious(0.01) probably_damaging(0.969) TCGA-UB-A7MB-01 6 152555815 152555815 T C SYNE1 Silent p.L6839L 0.47 TCGA-UB-A7MB-01 6 152831366 152831366 C T SYNE1 Silent p.K181K 0.09 TCGA-UB-A7MB-01 6 153043211 153043211 T A MYCT1 Silent p.P177P 0.42 TCGA-UB-A7MB-01 6 155776903 155776903 A G NOX3 Missense_Mutation p.L11P 0.42 tolerated(0.21) benign(0.014) TCGA-UB-A7MB-01 6 157528624 157528624 A T ARID1B Missense_Mutation p.R2117W 0.43 probably_damaging(0.997) TCGA-UB-A7MB-01 6 159463252 159463252 A C TAGAP Missense_Mutation p.L58R 0.37 tolerated(0.07) benign(0.019) TCGA-UB-A7MB-01 6 159692645 159692645 C G FNDC1 3'UTR 0.48 TCGA-UB-A7MB-01 6 160103518 160103518 T C SOD2 3'UTR 0.12 TCGA-UB-A7MB-01 6 160219194 160219194 C G MRPL18 3'UTR 0.33 TCGA-UB-A7MB-01 6 160469571 160469571 A G IGF2R Missense_Mutation p.D837G 0.39 tolerated(0.25) benign(0.013) TCGA-UB-A7MB-01 6 161160115 161160115 A G PLG Silent p.S631S 0.41 TCGA-UB-A7MB-01 6 161523729 161523729 A T MAP3K4 Splice_Site p.X1259_splice 0.49 TCGA-UB-A7MB-01 6 161537962 161537962 A G MAP3K4 3'UTR 0.59 TCGA-UB-A7MB-01 6 165863831 165863831 T G PDE10A Missense_Mutation p.Q82P 0.35 deleterious(0.02) probably_damaging(0.993) TCGA-UB-A7MB-01 6 166578331 166578331 T A T Nonsense_Mutation p.K209* 0.58 TCGA-UB-A7MB-01 6 167550197 167550197 C A CCR6 Missense_Mutation p.T160K 0.31 deleterious(0) benign(0.06) TCGA-UB-A7MB-01 6 170627636 170627636 G T FAM120B Missense_Mutation p.R386S 0.47 tolerated_low_confidence(0.07) benign(0.117) TCGA-UB-A7MB-01 6 18465185 18465185 A G RNF144B Missense_Mutation p.I267V 0.47 tolerated(0.16) benign(0.005) TCGA-UB-A7MB-01 6 20124804 20124804 T A MBOAT1 Missense_Mutation p.T248S 0.39 tolerated(0.5) benign(0.124) TCGA-UB-A7MB-01 6 25983702 25983702 A T TRIM38 Silent p.A395A 0.38 TCGA-UB-A7MB-01 6 26091582 26091582 A G HFE Silent p.Q127Q 0.46 TCGA-UB-A7MB-01 6 26546008 26546008 G A HMGN4 3'UTR 0.51 TCGA-UB-A7MB-01 6 27777844 27777844 C G HIST1H3H 5'UTR 0.33 TCGA-UB-A7MB-01 6 27782393 27782393 C A HIST1H2AJ Missense_Mutation p.E42D 0.48 tolerated_low_confidence(0.07) benign(0.039) TCGA-UB-A7MB-01 6 28268678 28268678 A G PGBD1 Silent p.R349R 0.54 TCGA-UB-A7MB-01 6 28404070 28404070 A G ZSCAN23 5'UTR 0.42 TCGA-UB-A7MB-01 6 29080029 29080029 T A OR2J3 Missense_Mutation p.M121K 0.42 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 6 29141976 29141976 A G OR2J2 Silent p.L188L 0.45 TCGA-UB-A7MB-01 6 29343000 29343000 T A OR12D3 Missense_Mutation p.Q22L 0.36 deleterious(0) possibly_damaging(0.461) TCGA-UB-A7MB-01 6 29408614 29408614 C A OR10C1 Silent p.S274S 0.41 TCGA-UB-A7MB-01 6 29556136 29556136 T G OR2H2 Missense_Mutation p.C139G 0.58 deleterious(0.01) probably_damaging(0.999) TCGA-UB-A7MB-01 6 29595353 29595353 C T GABBR1 Silent p.Q189Q 0.40 TCGA-UB-A7MB-01 6 29627246 29627246 A T MOG Missense_Mutation p.Y80F 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-UB-A7MB-01 6 29639245 29639245 T G MOG 3'UTR 0.29 TCGA-UB-A7MB-01 6 30671686 30671686 C A MDC1 Missense_Mutation p.W1758C 0.39 tolerated(0.12) benign(0.408) TCGA-UB-A7MB-01 6 30892148 30892148 G C VARS2 Silent p.V858V 0.43 TCGA-UB-A7MB-01 6 30919181 30919181 T A DPCR1 Silent p.P980P 0.53 TCGA-UB-A7MB-01 6 30955029 30955029 A T MUC21 Silent p.T359T 0.38 TCGA-UB-A7MB-01 6 31935153 31935153 A T SKIV2L Missense_Mutation p.Q861L 0.41 deleterious(0.02) possibly_damaging(0.831) TCGA-UB-A7MB-01 6 32007351 32007351 A G CYP21A2 Missense_Mutation p.K193R 0.26 tolerated(0.38) benign(0.007) TCGA-UB-A7MB-01 6 32159648 32159648 C A GPSM3 Missense_Mutation p.Q61H 0.20 tolerated(0.16) probably_damaging(0.948) TCGA-UB-A7MB-01 6 32780878 32780878 C T HLA-DOB 3'UTR 0.57 TCGA-UB-A7MB-01 6 32974484 32974484 G A HLA-DOA 3'UTR 0.52 TCGA-UB-A7MB-01 6 33143844 33143844 A G COL11A2 Silent p.G653G 0.27 TCGA-UB-A7MB-01 6 33282782 33282782 T A ZBTB22 3'UTR 0.46 TCGA-UB-A7MB-01 6 33655094 33655094 T A ITPR3 Missense_Mutation p.L2056Q 0.52 deleterious(0) possibly_damaging(0.602) TCGA-UB-A7MB-01 6 35748856 35748856 G A CLPSL1 5'UTR 0.51 TCGA-UB-A7MB-01 6 38816528 38816528 A G DNAH8 Missense_Mutation p.Y1500C 0.43 probably_damaging(0.998) TCGA-UB-A7MB-01 6 39040694 39040694 T A GLP1R Missense_Mutation p.L189Q 0.57 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 6 42562032 42562032 A G UBR2 Missense_Mutation p.E174G 0.34 tolerated(0.31) benign(0.027) TCGA-UB-A7MB-01 6 43155009 43155009 T A CUL9 Silent p.P471P 0.38 TCGA-UB-A7MB-01 6 44253945 44253945 T C TCTE1 Missense_Mutation p.Q201R 0.34 tolerated(0.51) benign(0.001) TCGA-UB-A7MB-01 6 49937307 49937307 A G DEFB113 Missense_Mutation p.V11A 0.45 deleterious_low_confidence(0.01) benign(0.081) TCGA-UB-A7MB-01 6 50712859 50712859 G T TFAP2D Missense_Mutation p.C308F 0.44 deleterious(0) probably_damaging(0.997) TCGA-UB-A7MB-01 6 51491880 51491880 A T PKHD1 Silent p.T3900T 0.38 TCGA-UB-A7MB-01 6 51890688 51890688 T C PKHD1 Missense_Mutation p.Q1307R 0.47 tolerated(0.57) benign(0.001) TCGA-UB-A7MB-01 6 52129386 52129386 T A MCM3 Nonstop_Mutation p.*854Cext*38 0.51 TCGA-UB-A7MB-01 6 53787665 53787665 T A LRRC1 3'UTR 0.38 TCGA-UB-A7MB-01 6 55142234 55142234 A G HCRTR2 Silent p.S273S 0.47 TCGA-UB-A7MB-01 6 55940292 55940292 T C COL21A1 Silent p.G632G 0.40 TCGA-UB-A7MB-01 6 56993604 56993604 A T ZNF451 Silent p.A130A 0.31 TCGA-UB-A7MB-01 6 65301602 65301602 A C EYS Missense_Mutation p.D1386E 0.39 tolerated(0.27) benign(0.012) TCGA-UB-A7MB-01 6 66204911 66204911 T - EYS Frame_Shift_Del p.G132Efs*10 0.30 TCGA-UB-A7MB-01 6 69348551 69348551 A T BAI3 Splice_Site 0.44 TCGA-UB-A7MB-01 6 69949085 69949085 C T BAI3 Silent p.L927L 0.40 TCGA-UB-A7MB-01 6 70935655 70935655 G T COL9A1 Missense_Mutation p.P854H 0.55 probably_damaging(1) TCGA-UB-A7MB-01 6 75794941 75794941 A T COL12A1 3'UTR 0.61 TCGA-UB-A7MB-01 6 76576647 76576647 A T MYO6 Splice_Site p.X591_splice 0.54 TCGA-UB-A7MB-01 6 79657378 79657378 T A PHIP Missense_Mutation p.S1390C 0.40 tolerated(0.06) probably_damaging(0.995) TCGA-UB-A7MB-01 6 79770201 79770201 T A PHIP Missense_Mutation p.S145C 0.45 deleterious(0) benign(0.397) TCGA-UB-A7MB-01 6 80223068 80223068 C A LCA5 Missense_Mutation p.S194I 0.41 deleterious(0.01) benign(0.198) TCGA-UB-A7MB-01 6 88128124 88128124 A T C6ORF165 Missense_Mutation p.Q277L 0.46 tolerated(0.1) benign(0.158) TCGA-UB-A7MB-01 6 90371171 90371171 T C MDN1 Missense_Mutation p.T4898A 0.38 benign(0.184) TCGA-UB-A7MB-01 6 90371808 90371808 C A MDN1 Nonsense_Mutation p.E4855* 0.44 TCGA-UB-A7MB-01 6 90566809 90566809 A G CASP8AP2 RNA 0.08 TCGA-UB-A7MB-01 6 90661011 90661011 T A BACH2 Missense_Mutation p.R272W 0.54 deleterious(0.02) benign(0.213) TCGA-UB-A7MB-01 6 96659645 96659645 A G FUT9 3'UTR 0.33 TCGA-UB-A7MB-01 6 96659666 96659666 T - FUT9 3'UTR 0.40 TCGA-UB-A7MB-01 6 97339048 97339048 T A NDUFAF4 Nonsense_Mutation p.K154* 0.30 TCGA-UB-A7MB-01 6 9933004 9933004 T A OFCC1 Missense_Mutation p.K85N 0.47 deleterious(0) probably_damaging(0.982) TCGA-UB-A7MB-01 7 100054269 100054269 A T C7orf61 3'UTR 0.62 TCGA-UB-A7MB-01 7 100086259 100086259 A T NYAP1 Silent p.S305S 0.54 TCGA-UB-A7MB-01 7 100349862 100349862 A G ZAN Missense_Mutation p.I712V 0.49 benign(0.031) TCGA-UB-A7MB-01 7 100365533 100365533 T C ZAN Missense_Mutation p.L1647P 0.45 unknown(0) TCGA-UB-A7MB-01 7 100674961 100674961 C A MUC17 Missense_Mutation p.N88K 0.53 benign(0.001) TCGA-UB-A7MB-01 7 100685847 100685847 C A MUC17 Missense_Mutation p.P3717H 0.39 possibly_damaging(0.893) TCGA-UB-A7MB-01 7 102953363 102953363 A T PMPCB 3'UTR 0.45 TCGA-UB-A7MB-01 7 107329628 107329628 A C SLC26A4 Missense_Mutation p.T378P 0.36 tolerated(0.6) benign(0.005) TCGA-UB-A7MB-01 7 112407617 112407617 T C TMEM168 Missense_Mutation p.I577V 0.32 tolerated(1) benign(0) TCGA-UB-A7MB-01 7 112724069 112724069 A T GPR85 Missense_Mutation p.S236R 0.40 deleterious(0.01) possibly_damaging(0.762) TCGA-UB-A7MB-01 7 113519017 113519017 G T PPP1R3A Nonsense_Mutation p.C710* 0.50 TCGA-UB-A7MB-01 7 113520088 113520088 T A PPP1R3A Silent p.A353A 0.46 TCGA-UB-A7MB-01 7 117828430 117828430 A T NAA38 Silent p.L57L 0.38 TCGA-UB-A7MB-01 7 121684539 121684539 C A PTPRZ1 Missense_Mutation p.L2001M 0.47 tolerated(0.06) benign(0.003) TCGA-UB-A7MB-01 7 122342188 122342188 T C RNF148 Missense_Mutation p.Y206C 0.49 deleterious(0.02) benign(0) TCGA-UB-A7MB-01 7 123593884 123593884 G T SPAM1 Missense_Mutation p.G87V 0.49 tolerated(0.29) benign(0.405) TCGA-UB-A7MB-01 7 127251726 127251726 G T PAX4 Missense_Mutation p.S251Y 0.55 tolerated(0.44) possibly_damaging(0.739) TCGA-UB-A7MB-01 7 127638003 127638003 A T SND1 Intron 0.54 TCGA-UB-A7MB-01 7 127670231 127670231 G A LRRC4 Missense_Mutation p.R155C 0.42 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 7 128449649 128449649 A T CCDC136 Missense_Mutation p.E584V 0.50 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 7 128488063 128488063 A T FLNC Silent p.P1507P 0.37 TCGA-UB-A7MB-01 7 128494857 128494857 T A FLNC Silent p.A2342A 0.38 TCGA-UB-A7MB-01 7 129847933 129847933 G T SSMEM1 Missense_Mutation p.W61C 0.52 deleterious(0) possibly_damaging(0.878) TCGA-UB-A7MB-01 7 129856384 129856384 T A SSMEM1 3'UTR 0.38 TCGA-UB-A7MB-01 7 134613624 134613624 A T CALD1 Missense_Mutation p.D64V 0.48 deleterious(0) unknown(0) TCGA-UB-A7MB-01 7 135378973 135378973 A T SLC13A4 Missense_Mutation p.C344S 0.55 tolerated(0.13) benign(0.137) TCGA-UB-A7MB-01 7 136700927 136700927 T A CHRM2 Missense_Mutation p.C439S 0.42 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 7 137170144 137170144 A T DGKI Silent p.S801S 0.50 TCGA-UB-A7MB-01 7 138749665 138749665 T C ZC3HAV1 Silent p.P651P 0.49 TCGA-UB-A7MB-01 7 138874216 138874216 A T TTC26 3'UTR 0.48 TCGA-UB-A7MB-01 7 140301960 140301960 C A DENND2A Missense_Mutation p.V80L 0.41 tolerated(0.73) benign(0.001) TCGA-UB-A7MB-01 7 140301961 140301961 C A DENND2A Silent p.T79T 0.41 TCGA-UB-A7MB-01 7 141427034 141427034 T C WEE2 Intron 0.50 TCGA-UB-A7MB-01 7 141952141 141952141 A C PRSS58 Missense_Mutation p.L209R 0.38 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 7 142612494 142612494 C A TRPV5 Silent p.G423G 0.44 TCGA-UB-A7MB-01 7 143054107 143054107 C A FAM131B Missense_Mutation p.A207S 0.43 tolerated(0.75) possibly_damaging(0.547) TCGA-UB-A7MB-01 7 144015436 144015436 C T OR2A1 Silent p.T73T 0.25 TCGA-UB-A7MB-01 7 144074266 144074266 A T ARHGEF5 Missense_Mutation p.D1505V 0.30 deleterious(0) probably_damaging(0.986) TCGA-UB-A7MB-01 7 149420891 149420891 C A KRBA1 Missense_Mutation p.P280H 0.45 deleterious(0) probably_damaging(0.987) TCGA-UB-A7MB-01 7 150269617 150269617 C A GIMAP4 Missense_Mutation p.F153L 0.33 tolerated(0.1) benign(0.364) TCGA-UB-A7MB-01 7 157160147 157160147 G T DNAJB6 Nonsense_Mutation p.G106* 0.48 TCGA-UB-A7MB-01 7 158823467 158823467 A T VIPR2 Missense_Mutation p.L386Q 0.28 deleterious(0) probably_damaging(0.959) TCGA-UB-A7MB-01 7 19184845 19184845 T A FERD3L Silent p.R47R 0.47 TCGA-UB-A7MB-01 7 20193914 20193914 A T MACC1 Missense_Mutation p.W750R 0.47 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 7 20683101 20683101 G C ABCB5 Missense_Mutation p.S175T 0.11 deleterious(0.02) benign(0.062) TCGA-UB-A7MB-01 7 20778743 20778743 G T ABCB5 Missense_Mutation p.S1002I 0.36 deleterious(0) probably_damaging(0.945) TCGA-UB-A7MB-01 7 21630534 21630534 A T DNAH11 Splice_Site p.X724_splice 0.51 TCGA-UB-A7MB-01 7 21646303 21646303 T C DNAH11 Silent p.Y1268Y 0.46 TCGA-UB-A7MB-01 7 2317782 2317782 T C SNX8 Missense_Mutation p.K85E 0.37 deleterious(0.01) possibly_damaging(0.458) TCGA-UB-A7MB-01 7 27141915 27141915 C A HOXA2 Missense_Mutation p.A69S 0.62 tolerated(1) benign(0.002) TCGA-UB-A7MB-01 7 27238961 27238961 T C HOXA13 Missense_Mutation p.M246V 0.41 tolerated(1) benign(0.003) TCGA-UB-A7MB-01 7 27833956 27833956 T C TAX1BP1 Silent p.N475N 0.43 TCGA-UB-A7MB-01 7 29103852 29103852 T A CPVL Splice_Site p.X322_splice 0.42 TCGA-UB-A7MB-01 7 2983944 2983944 T A CARD11 Nonsense_Mutation p.K196* 0.43 TCGA-UB-A7MB-01 7 2987406 2987406 A C CARD11 Missense_Mutation p.M8R 0.43 deleterious_low_confidence(0.01) benign(0.421) TCGA-UB-A7MB-01 7 29915478 29915478 A C WIPF3 Silent p.A41A 0.40 TCGA-UB-A7MB-01 7 30739585 30739585 C T CRHR2 Missense_Mutation p.C22Y 0.46 deleterious_low_confidence(0.04) benign(0.044) TCGA-UB-A7MB-01 7 31692451 31692451 C A CCDC129 Intron 0.40 TCGA-UB-A7MB-01 7 31732116 31732116 G T PPP1R17 Missense_Mutation p.D21Y 0.43 deleterious_low_confidence(0) possibly_damaging(0.902) TCGA-UB-A7MB-01 7 32109959 32109959 A T PDE1C Intron 0.40 TCGA-UB-A7MB-01 7 33976943 33976943 T C BMPER Missense_Mutation p.S88P 0.43 tolerated(0.21) benign(0) TCGA-UB-A7MB-01 7 35053222 35053222 G A DPY19L1 Silent p.P96P 0.48 TCGA-UB-A7MB-01 7 35733822 35733822 T A HERPUD2 Missense_Mutation p.H40L 0.55 deleterious(0) probably_damaging(0.973) TCGA-UB-A7MB-01 7 36436005 36436005 A T ANLN Missense_Mutation p.Q50L 0.49 tolerated(0.2) benign(0.001) TCGA-UB-A7MB-01 7 36763825 36763825 T G AOAH 5'UTR 0.57 TCGA-UB-A7MB-01 7 38424372 38424372 G T AMPH 3'UTR 0.49 TCGA-UB-A7MB-01 7 38500915 38500915 C A AMPH Missense_Mutation p.V329F 0.49 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 7 45002572 45002572 T A MYO1G Missense_Mutation p.Q966L 0.45 deleterious(0.04) benign(0.185) TCGA-UB-A7MB-01 7 45632453 45632453 G T ADCY1 Missense_Mutation p.Q245H 0.49 deleterious(0.05) possibly_damaging(0.764) TCGA-UB-A7MB-01 7 45717819 45717819 C T ADCY1 Silent p.L619L 0.43 TCGA-UB-A7MB-01 7 47408179 47408179 T A TNS3 Silent p.P688P 0.32 TCGA-UB-A7MB-01 7 47870899 47870899 T G PKD1L1 Missense_Mutation p.Q2130P 0.44 tolerated(0.34) benign(0) TCGA-UB-A7MB-01 7 4794986 4794986 A G FOXK1 Missense_Mutation p.Y341C 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-UB-A7MB-01 7 47970705 47970705 T A PKD1L1 Nonsense_Mutation p.R245* 0.44 TCGA-UB-A7MB-01 7 48008897 48008897 C A HUS1 Missense_Mutation p.D187Y 0.38 deleterious(0) benign(0.382) TCGA-UB-A7MB-01 7 48314790 48314790 G T ABCA13 Missense_Mutation p.V1843F 0.39 benign(0.016) TCGA-UB-A7MB-01 7 48412076 48412076 T C ABCA13 Silent p.F3705F 0.44 TCGA-UB-A7MB-01 7 48431709 48431709 A T ABCA13 Missense_Mutation p.K3949M 0.42 possibly_damaging(0.907) TCGA-UB-A7MB-01 7 4843189 4843189 T G RADIL Silent p.P829P 0.39 TCGA-UB-A7MB-01 7 48528889 48528889 C A ABCA13 Missense_Mutation p.N4413K 0.37 probably_damaging(1) TCGA-UB-A7MB-01 7 48559635 48559635 A T ABCA13 Splice_Site p.X4600_splice 0.24 TCGA-UB-A7MB-01 7 50450343 50450343 A T IKZF1 Missense_Mutation p.H176L 0.65 deleterious(0.04) probably_damaging(0.935) TCGA-UB-A7MB-01 7 51095619 51095619 T G COBL Silent p.T1058T 0.48 TCGA-UB-A7MB-01 7 5336593 5336593 A G SLC29A4 Missense_Mutation p.S216G 0.42 tolerated(0.07) possibly_damaging(0.752) TCGA-UB-A7MB-01 7 5353216 5353216 T A TNRC18 Nonsense_Mutation p.K2436* 0.27 TCGA-UB-A7MB-01 7 5410083 5410083 T G TNRC18 Missense_Mutation p.Q1381P 0.44 benign(0.004) TCGA-UB-A7MB-01 7 56066836 56066836 G T GBAS 3'UTR 0.54 TCGA-UB-A7MB-01 7 5770366 5770366 C G RNF216 Missense_Mutation p.A402P 0.51 tolerated(0.25) benign(0.019) TCGA-UB-A7MB-01 7 6183734 6183734 A T USP42 Silent p.P299P 0.40 TCGA-UB-A7MB-01 7 63529267 63529267 A T ZNF727 Splice_Site p.X2_splice 0.47 TCGA-UB-A7MB-01 7 63538686 63538686 A T ZNF727 Missense_Mutation p.E420V 0.51 deleterious(0.01) benign(0.223) TCGA-UB-A7MB-01 7 63808697 63808697 A G ZNF736 Silent p.R152R 0.50 TCGA-UB-A7MB-01 7 6560210 6560210 T A GRID2IP Missense_Mutation p.R423W 0.47 deleterious(0) benign(0.002) TCGA-UB-A7MB-01 7 70885934 70885934 C T WBSCR17 Missense_Mutation p.R269C 0.56 deleterious(0.03) probably_damaging(0.998) TCGA-UB-A7MB-01 7 71036347 71036347 T G WBSCR17 Missense_Mutation p.M347R 0.47 deleterious(0.01) benign(0.118) TCGA-UB-A7MB-01 7 72658294 72658294 A T GTF2IRD2P1 RNA 0.27 TCGA-UB-A7MB-01 7 73254767 73254767 T A WBSCR27 Missense_Mutation p.Q122L 0.43 tolerated(0.05) benign(0.014) TCGA-UB-A7MB-01 7 75192502 75192502 T A HIP1 Missense_Mutation p.Q290L 0.42 tolerated(0.27) benign(0.05) TCGA-UB-A7MB-01 7 7530242 7530242 T A COL28A1 Silent p.P354P 0.45 TCGA-UB-A7MB-01 7 7612424 7612424 A G MIOS Silent p.K106K 0.39 TCGA-UB-A7MB-01 7 77567113 77567113 A T PHTF2 Silent p.A441A 0.43 TCGA-UB-A7MB-01 7 80457899 80457899 A G SEMA3C Splice_Site p.X88_splice 0.38 TCGA-UB-A7MB-01 7 8167517 8167517 T A ICA1 Missense_Mutation p.Q439L 0.50 tolerated(0.13) benign(0.003) TCGA-UB-A7MB-01 7 82764680 82764680 A T PCLO Nonsense_Mutation p.L729* 0.39 TCGA-UB-A7MB-01 7 82764790 82764790 C A PCLO Missense_Mutation p.Q692H 0.48 unknown(0) TCGA-UB-A7MB-01 7 8475236 8475236 T G NXPH1 Intron 0.41 TCGA-UB-A7MB-01 7 86571334 86571334 A G KIAA1324L Silent p.S247S 0.41 TCGA-UB-A7MB-01 7 88965401 88965401 A T ZNF804B Silent p.T1035T 0.50 TCGA-UB-A7MB-01 7 89917620 89917620 G T C7orf63 Missense_Mutation p.G577C 0.34 deleterious(0) probably_damaging(0.987) TCGA-UB-A7MB-01 7 89936396 89936396 A G C7orf63 Missense_Mutation p.Q816R 0.40 tolerated(0.11) benign(0.023) TCGA-UB-A7MB-01 7 90043085 90043085 A G CLDN12 3'UTR 0.51 TCGA-UB-A7MB-01 7 91724335 91724335 A T AKAP9 Splice_Site p.X3193_splice 0.47 TCGA-UB-A7MB-01 7 91792827 91792827 A C LRRD1 Missense_Mutation p.C564G 0.44 tolerated(0.68) benign(0.158) TCGA-UB-A7MB-01 7 91794336 91794336 T A LRRD1 Nonsense_Mutation p.R61* 0.39 TCGA-UB-A7MB-01 7 92158171 92158171 A T RBM48 Missense_Mutation p.H15L 0.45 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 7 92763730 92763730 T C SAMD9L Missense_Mutation p.R519G 0.47 deleterious(0.01) possibly_damaging(0.848) TCGA-UB-A7MB-01 7 95023973 95023973 T A PON3 Missense_Mutation p.H43L 0.54 tolerated(0.06) benign(0.053) TCGA-UB-A7MB-01 7 98946489 98946489 A G ARPC1A Missense_Mutation p.H136R 0.51 deleterious(0.02) benign(0.035) TCGA-UB-A7MB-01 7 99097607 99097607 A G ZNF394 Missense_Mutation p.L37S 0.43 deleterious(0) benign(0.273) TCGA-UB-A7MB-01 8 101075783 101075783 T A RGS22 Missense_Mutation p.R405W 0.47 tolerated(0.07) possibly_damaging(0.711) TCGA-UB-A7MB-01 8 101287279 101287279 T A RNF19A Missense_Mutation p.Q262L 0.50 deleterious(0.01) possibly_damaging(0.613) TCGA-UB-A7MB-01 8 102611327 102611327 A G GRHL2 Missense_Mutation p.E349G 0.41 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 8 104394919 104394919 T C CTHRC1 3'UTR 0.56 TCGA-UB-A7MB-01 8 104924293 104924293 T G RIMS2 Missense_Mutation p.W569G 0.43 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-UB-A7MB-01 8 106813460 106813460 C A ZFPM2 Missense_Mutation p.L384I 0.45 tolerated(0.25) benign(0.009) TCGA-UB-A7MB-01 8 106813461 106813461 T C ZFPM2 Missense_Mutation p.L384P 0.45 deleterious(0.02) possibly_damaging(0.705) TCGA-UB-A7MB-01 8 106814726 106814726 A G ZFPM2 Missense_Mutation p.N806D 0.51 tolerated(0.1) benign(0.031) TCGA-UB-A7MB-01 8 107691475 107691475 A G OXR1 Silent p.G87G 0.45 TCGA-UB-A7MB-01 8 109094862 109094862 T C RSPO2 Missense_Mutation p.Q2R 0.33 tolerated(0.12) benign(0.001) TCGA-UB-A7MB-01 8 110374775 110374775 G T PKHD1L1 5'UTR 0.59 TCGA-UB-A7MB-01 8 110413802 110413802 T G PKHD1L1 Missense_Mutation p.L453R 0.39 deleterious(0) probably_damaging(0.997) TCGA-UB-A7MB-01 8 113237150 113237150 A T CSMD3 Silent p.P3658P 0.31 TCGA-UB-A7MB-01 8 113702110 113702110 T A CSMD3 Silent p.I714I 0.46 TCGA-UB-A7MB-01 8 119936998 119936998 A T TNFRSF11B Missense_Mutation p.I274N 0.53 deleterious(0) possibly_damaging(0.851) TCGA-UB-A7MB-01 8 120435449 120435449 T A NOV 3'UTR 0.38 TCGA-UB-A7MB-01 8 120594814 120594814 A G ENPP2 Silent p.N576N 0.38 TCGA-UB-A7MB-01 8 124664565 124664565 A G KLHL38 Missense_Mutation p.M201T 0.44 deleterious(0.04) benign(0.314) TCGA-UB-A7MB-01 8 124987506 124987506 A T FER1L6 Missense_Mutation p.T215S 0.44 tolerated(0.32) benign(0.005) TCGA-UB-A7MB-01 8 124998413 124998413 A G FER1L6 Missense_Mutation p.I506V 0.29 tolerated(0.18) benign(0.001) TCGA-UB-A7MB-01 8 125072762 125072762 T A FER1L6 Intron 0.38 TCGA-UB-A7MB-01 8 131130809 131130809 T A ASAP1 Missense_Mutation p.R574W 0.41 deleterious(0) possibly_damaging(0.768) TCGA-UB-A7MB-01 8 140898164 140898164 T G TRAPPC9 Missense_Mutation p.Q1103P 0.49 tolerated(0.34) probably_damaging(0.948) TCGA-UB-A7MB-01 8 142185462 142185462 A T DENND3 Silent p.L733L 0.44 TCGA-UB-A7MB-01 8 142188201 142188201 C A DENND3 Silent p.V834V 0.66 TCGA-UB-A7MB-01 8 142441279 142441279 C A PTP4A3 3'UTR 0.62 TCGA-UB-A7MB-01 8 143425368 143425368 T G TSNARE1 Missense_Mutation p.Q235P 0.34 tolerated(0.12) benign(0.003) TCGA-UB-A7MB-01 8 144789934 144789934 A C CCDC166 Missense_Mutation p.Y116D 0.75 deleterious(0) probably_damaging(0.988) TCGA-UB-A7MB-01 8 144808647 144808647 T A FAM83H Missense_Mutation p.Q995L 0.50 deleterious(0.01) possibly_damaging(0.786) TCGA-UB-A7MB-01 8 144996711 144996711 G T PLEC Silent p.L2599L 0.47 TCGA-UB-A7MB-01 8 145579136 145579136 T A FBXL6 3'UTR 0.38 TCGA-UB-A7MB-01 8 145584307 145584307 G A SLC52A2 Silent p.L353L 0.53 TCGA-UB-A7MB-01 8 15480679 15480679 A T TUSC3 Missense_Mutation p.I77L 0.80 tolerated(0.07) benign(0.002) TCGA-UB-A7MB-01 8 1953297 1953297 T A KBTBD11 3'UTR 0.72 TCGA-UB-A7MB-01 8 20110758 20110758 C T LZTS1 Silent p.K228K 0.85 TCGA-UB-A7MB-01 8 22476767 22476767 C G CCAR2 Missense_Mutation p.R876G 0.36 deleterious(0) benign(0.345) TCGA-UB-A7MB-01 8 24346837 24346837 C T ADAM7 Silent p.G419G 0.73 TCGA-UB-A7MB-01 8 28206270 28206270 C T ZNF395 Missense_Mutation p.R503Q 1.00 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 8 2823327 2823327 T A CSMD1 Missense_Mutation p.R3084W 0.71 benign(0.024) TCGA-UB-A7MB-01 8 2944651 2944651 T A CSMD1 Missense_Mutation p.Y2481F 0.81 benign(0.026) TCGA-UB-A7MB-01 8 2964161 2964161 C A CSMD1 Missense_Mutation p.D2280Y 0.79 probably_damaging(0.923) TCGA-UB-A7MB-01 8 3216815 3216815 G T CSMD1 Silent p.R1055R 0.81 TCGA-UB-A7MB-01 8 35631946 35631946 G T UNC5D Missense_Mutation p.A870S 0.81 tolerated(0.9) benign(0.303) TCGA-UB-A7MB-01 8 39785506 39785506 T A IDO1 Silent p.A338A 0.52 TCGA-UB-A7MB-01 8 40011185 40011185 A C C8orf4 Missense_Mutation p.Q45P 0.55 tolerated(0.13) benign(0.143) TCGA-UB-A7MB-01 8 41519015 41519015 T A ANK1 Intron 0.37 TCGA-UB-A7MB-01 8 48794060 48794060 T C PRKDC Missense_Mutation p.N1661D 0.42 benign(0.005) TCGA-UB-A7MB-01 8 57026368 57026368 C A MOS Missense_Mutation p.E58D 0.54 tolerated(0.56) benign(0.025) TCGA-UB-A7MB-01 8 57079715 57079715 C T PLAG1 Missense_Mutation p.R197Q 0.18 deleterious(0) probably_damaging(0.968) TCGA-UB-A7MB-01 8 59498516 59498516 A G NSMAF Silent p.N861N 0.32 TCGA-UB-A7MB-01 8 72983964 72983964 T A TRPA1 Nonsense_Mutation p.R84* 0.39 TCGA-UB-A7MB-01 8 74233273 74233273 A G RDH10 Missense_Mutation p.Y244C 0.39 deleterious(0.04) benign(0.035) TCGA-UB-A7MB-01 8 87229922 87229922 T A SLC7A13 Missense_Mutation p.Q319L 0.47 tolerated(0.06) benign(0.314) TCGA-UB-A7MB-01 8 87899824 87899824 T A CNBD1 Missense_Mutation p.I48N 0.44 deleterious(0) possibly_damaging(0.483) TCGA-UB-A7MB-01 8 88365947 88365947 T G CNBD1 Silent p.P412P 0.41 TCGA-UB-A7MB-01 8 90995076 90995076 T C NBN Silent p.P15P 0.45 TCGA-UB-A7MB-01 8 92401631 92401631 T A SLC26A7 Missense_Mutation p.F581I 0.47 deleterious(0) possibly_damaging(0.487) TCGA-UB-A7MB-01 8 92983058 92983058 A T RUNX1T1 Missense_Mutation p.V467E 0.45 deleterious(0.01) probably_damaging(0.98) TCGA-UB-A7MB-01 8 92998408 92998408 C T RUNX1T1 Missense_Mutation p.S419N 0.39 tolerated(0.45) benign(0.093) TCGA-UB-A7MB-01 8 94798504 94798504 G A TMEM67 Missense_Mutation p.V448I 0.35 tolerated(0.3) benign(0.009) TCGA-UB-A7MB-01 8 95501074 95501074 G T KIAA1429 Missense_Mutation p.P1767T 0.52 tolerated(0.1) probably_damaging(0.959) TCGA-UB-A7MB-01 8 95906153 95906153 T A CCNE2 Missense_Mutation p.E44V 0.39 tolerated(0.1) benign(0.004) TCGA-UB-A7MB-01 9 100698475 100698475 C A HEMGN Nonsense_Mutation p.E51* 0.31 TCGA-UB-A7MB-01 9 102590707 102590707 T A NR4A3 Missense_Mutation p.L139Q 0.75 deleterious(0.03) benign(0.33) TCGA-UB-A7MB-01 9 105767379 105767379 G T CYLC2 Missense_Mutation p.D156Y 0.84 deleterious(0.02) unknown(0) TCGA-UB-A7MB-01 9 105767380 105767380 A C CYLC2 Missense_Mutation p.D156A 0.12 tolerated(0.44) unknown(0) TCGA-UB-A7MB-01 9 107620923 107620923 T A ABCA1 Silent p.S200S 0.85 TCGA-UB-A7MB-01 9 117106039 117106039 T C AKNA Missense_Mutation p.N1236D 0.69 tolerated(0.17) benign(0.002) TCGA-UB-A7MB-01 9 117118383 117118383 T A AKNA Silent p.A960A 0.70 TCGA-UB-A7MB-01 9 120475741 120475741 A T TLR4 Silent p.S445S 0.12 TCGA-UB-A7MB-01 9 124522473 124522473 A C DAB2IP Missense_Mutation p.K281Q 0.84 tolerated(0.43) probably_damaging(0.998) TCGA-UB-A7MB-01 9 125437543 125437543 C T OR1L3 Silent p.I45I 0.89 TCGA-UB-A7MB-01 9 125782674 125782674 A T RABGAP1 Missense_Mutation p.Q577L 0.85 tolerated(0.07) probably_damaging(0.999) TCGA-UB-A7MB-01 9 126794984 126794984 T C LHX2 Nonstop_Mutation p.*407Qext*1 0.81 TCGA-UB-A7MB-01 9 128124887 128124887 A G GAPVD1 Silent p.A1442A 0.75 TCGA-UB-A7MB-01 9 130536280 130536280 C G SH2D3C Silent p.V168V 0.14 TCGA-UB-A7MB-01 9 133768976 133768976 A T QRFP Missense_Mutation p.C84S 0.89 deleterious(0.01) benign(0.005) TCGA-UB-A7MB-01 9 135779040 135779040 T C TSC1 Missense_Mutation p.M736V 0.82 deleterious(0) benign(0.12) TCGA-UB-A7MB-01 9 136215815 136215815 G C RPL7A Silent p.P14P 0.22 TCGA-UB-A7MB-01 9 136270407 136270407 T C C9orf96 Silent p.S635S 0.82 TCGA-UB-A7MB-01 9 136384125 136384125 T A TMEM8C Missense_Mutation p.E90D 0.84 tolerated(0.19) probably_damaging(0.969) TCGA-UB-A7MB-01 9 137293489 137293489 C A RXRA Missense_Mutation p.Q14K 0.80 tolerated_low_confidence(0.24) benign(0.027) TCGA-UB-A7MB-01 9 137293490 137293490 A T RXRA Missense_Mutation p.Q14L 0.80 tolerated_low_confidence(0.25) benign(0.05) TCGA-UB-A7MB-01 9 138656968 138656968 T A KCNT1 Missense_Mutation p.L376Q 0.73 deleterious(0) probably_damaging(0.928) TCGA-UB-A7MB-01 9 138670532 138670532 A C KCNT1 Splice_Site p.X865_splice 0.11 TCGA-UB-A7MB-01 9 139648876 139648876 T G LCN8 3'UTR 0.82 TCGA-UB-A7MB-01 9 140127698 140127698 T A SLC34A3 Missense_Mutation p.W200R 0.86 deleterious(0) probably_damaging(0.998) TCGA-UB-A7MB-01 9 140695341 140695341 G T EHMT1 Missense_Mutation p.G873C 0.76 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 9 14722169 14722169 T A CER1 Missense_Mutation p.S168C 0.47 deleterious(0) probably_damaging(0.961) TCGA-UB-A7MB-01 9 14808126 14808126 T C FREM1 Missense_Mutation p.E967G 0.74 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MB-01 9 15447091 15447091 A T SNAPC3 Splice_Site p.X195_splice 0.44 TCGA-UB-A7MB-01 9 16437127 16437127 G T BNC2 Silent p.P355P 0.35 TCGA-UB-A7MB-01 9 17793437 17793437 T A SH3GL2 Silent p.T267T 0.50 TCGA-UB-A7MB-01 9 18892464 18892464 A G ADAMTSL1 Missense_Mutation p.K1574R 0.40 tolerated(0.76) benign(0.03) TCGA-UB-A7MB-01 9 20413886 20413886 A T MLLT3 Missense_Mutation p.C320S 0.46 tolerated(0.82) benign(0.01) TCGA-UB-A7MB-01 9 21077590 21077590 T G IFNB1 Missense_Mutation p.Q93H 0.19 deleterious(0.01) benign(0.017) TCGA-UB-A7MB-01 9 21077934 21077934 G T IFNB1 5'UTR 0.47 TCGA-UB-A7MB-01 9 21217242 21217242 A G IFNA16 Silent p.S21S 0.28 TCGA-UB-A7MB-01 9 21305011 21305011 T G IFNA5 Missense_Mutation p.E82A 0.67 deleterious(0) probably_damaging(0.947) TCGA-UB-A7MB-01 9 21409216 21409216 T A IFNA8 Missense_Mutation p.L14H 0.48 deleterious(0.01) probably_damaging(0.977) TCGA-UB-A7MB-01 9 33953474 33953474 T C UBAP2 Splice_Site p.X289_splice 0.51 TCGA-UB-A7MB-01 9 34723610 34723610 A C FAM205A Silent p.S1209S 0.31 TCGA-UB-A7MB-01 9 35674105 35674105 G T CA9 Missense_Mutation p.G50V 0.51 deleterious_low_confidence(0.01) unknown(0) TCGA-UB-A7MB-01 9 35684745 35684745 T C TPM2 Intron 0.34 TCGA-UB-A7MB-01 9 35724956 35724956 C A TLN1 Missense_Mutation p.D77Y 0.34 deleterious(0) probably_damaging(0.998) TCGA-UB-A7MB-01 9 35752015 35752015 A G RGP1 Silent p.A275A 0.38 TCGA-UB-A7MB-01 9 35957519 35957519 T C OR2S2 Missense_Mutation p.I193V 0.58 deleterious(0.03) possibly_damaging(0.872) TCGA-UB-A7MB-01 9 36122893 36122893 C T RECK Missense_Mutation p.H923Y 0.39 deleterious(0.01) possibly_damaging(0.454) TCGA-UB-A7MB-01 9 39171588 39171588 G T CNTNAP3 Missense_Mutation p.P371T 0.47 deleterious(0) probably_damaging(0.993) TCGA-UB-A7MB-01 9 40716160 40716160 G A FAM74A3 RNA 0.23 TCGA-UB-A7MB-01 9 5300131 5300131 A T RLN2 Silent p.G175G 0.09 TCGA-UB-A7MB-01 9 6012662 6012662 T A RANBP6 Silent p.S982S 0.11 TCGA-UB-A7MB-01 9 7046860 7046860 A T KDM4C Splice_Site p.X754_splice 0.93 TCGA-UB-A7MB-01 9 71155621 71155621 T A TMEM252 Missense_Mutation p.Q37L 0.34 tolerated(0.16) benign(0.122) TCGA-UB-A7MB-01 9 71397857 71397857 A T FAM122A 3'UTR 0.30 TCGA-UB-A7MB-01 9 77418778 77418778 T C TRPM6 Missense_Mutation p.R555G 0.30 deleterious(0.03) benign(0.005) TCGA-UB-A7MB-01 9 78973635 78973635 A T PCSK5 Missense_Mutation p.S1794C 0.29 deleterious(0.02) possibly_damaging(0.789) TCGA-UB-A7MB-01 9 79324425 79324425 A G PRUNE2 Missense_Mutation p.F922S 0.24 deleterious(0.03) probably_damaging(0.959) TCGA-UB-A7MB-01 9 8486105 8486105 C T PTPRD Silent p.G904G 0.50 TCGA-UB-A7MB-01 9 86495242 86495242 T A KIF27 Silent p.A871A 0.28 TCGA-UB-A7MB-01 9 86618617 86618617 A T RMI1 3'UTR 0.25 TCGA-UB-A7MB-01 9 87325598 87325598 A T NTRK2 Missense_Mutation p.I159F 0.91 deleterious(0) benign(0.387) TCGA-UB-A7MB-01 9 88842778 88842778 A T C9orf153 Silent p.P78P 0.42 TCGA-UB-A7MB-01 9 88952146 88952146 T A ZCCHC6 Intron 0.09 TCGA-UB-A7MB-01 9 90501957 90501957 T C SPATA31E1 Missense_Mutation p.L852P 0.34 deleterious(0) probably_damaging(0.941) TCGA-UB-A7MB-01 9 91617673 91617673 A T S1PR3 3'UTR 0.41 TCGA-UB-A7MB-01 9 92002518 92002518 G C SEMA4D Missense_Mutation p.I371M 0.10 deleterious(0.03) probably_damaging(0.998) TCGA-UB-A7MB-01 9 94488970 94488970 T A ROR2 Silent p.A413A 0.45 TCGA-UB-A7MB-01 9 95618117 95618117 C G ZNF484 Missense_Mutation p.E73Q 0.45 tolerated(0.24) benign(0.036) TCGA-UB-A7MB-01 9 96021605 96021605 T A WNK2 Silent p.P925P 0.42 TCGA-UB-A7MB-01 9 96051121 96051121 T A WNK2 Missense_Mutation p.L1399Q 0.37 unknown(0) TCGA-UB-A7MB-01 9 97522798 97522798 A T C9orf3 Missense_Mutation p.R245W 0.34 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 9 99250387 99250387 A G HABP4 Missense_Mutation p.Y339C 0.33 tolerated(0.16) benign(0.005) TCGA-UB-A7MB-01 9 99286009 99286009 T C CDC14B Splice_Site p.X316_splice 0.88 TCGA-UB-A7MB-01 X 100808409 100808409 A G ARMCX1 Missense_Mutation p.S166G 0.80 tolerated(0.1) benign(0.024) TCGA-UB-A7MB-01 X 100880234 100880234 A T ARMCX3 Nonsense_Mutation p.R89* 0.97 TCGA-UB-A7MB-01 X 101805018 101805018 A G NXF4 RNA 0.87 TCGA-UB-A7MB-01 X 102587014 102587014 T C TCEAL7 3'UTR 0.90 TCGA-UB-A7MB-01 X 105153328 105153328 T G NRK Silent p.A566A 0.90 TCGA-UB-A7MB-01 X 107396964 107396964 A T ATG4A 3'UTR 0.91 TCGA-UB-A7MB-01 X 107821343 107821343 T A COL4A5 Silent p.G227G 0.91 TCGA-UB-A7MB-01 X 110391047 110391047 T C PAK3 Missense_Mutation p.L156P 0.90 deleterious(0) probably_damaging(0.985) TCGA-UB-A7MB-01 X 111698806 111698806 A G ZCCHC16 Missense_Mutation p.S284G 0.88 tolerated(0.48) benign(0.043) TCGA-UB-A7MB-01 X 114424720 114424720 T C RBMXL3 Missense_Mutation p.V239A 0.84 tolerated_low_confidence(0.45) benign(0.058) TCGA-UB-A7MB-01 X 117722105 117722105 A G DOCK11 Missense_Mutation p.I601V 0.95 tolerated(1) benign(0) TCGA-UB-A7MB-01 X 117722147 117722147 T G DOCK11 Missense_Mutation p.C615G 0.89 tolerated(0.41) benign(0.036) TCGA-UB-A7MB-01 X 117910394 117910394 A G IL13RA1 Missense_Mutation p.K371E 0.15 deleterious(0) probably_damaging(0.968) TCGA-UB-A7MB-01 X 12905637 12905637 T G TLR7 Missense_Mutation p.F670L 0.71 deleterious(0.03) probably_damaging(0.967) TCGA-UB-A7MB-01 X 12924792 12924792 A G TLR8 5'UTR 0.77 TCGA-UB-A7MB-01 X 12938413 12938413 C A TLR8 Silent p.S418S 0.95 TCGA-UB-A7MB-01 X 12939723 12939723 A T TLR8 Missense_Mutation p.D855V 0.93 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 X 130419759 130419759 G T IGSF1 Missense_Mutation p.L121I 0.97 deleterious(0.01) probably_damaging(0.997) TCGA-UB-A7MB-01 X 133700330 133700330 C A PLAC1 Missense_Mutation p.C128F 0.93 tolerated(0.67) benign(0.002) TCGA-UB-A7MB-01 X 134166338 134166338 T C FAM127A 5'UTR 1.00 TCGA-UB-A7MB-01 X 134993960 134993960 A C SAGE1 Missense_Mutation p.N790T 0.90 tolerated(0.14) probably_damaging(0.991) TCGA-UB-A7MB-01 X 140271251 140271251 C A LDOC1 5'UTR 0.89 TCGA-UB-A7MB-01 X 141291576 141291576 A T MAGEC2 Silent p.P66P 0.91 TCGA-UB-A7MB-01 X 144904336 144904336 A T SLITRK2 Silent p.L131L 0.91 TCGA-UB-A7MB-01 X 147967466 147967466 A T AFF2 Missense_Mutation p.E437V 0.88 deleterious(0) probably_damaging(0.998) TCGA-UB-A7MB-01 X 149867740 149867740 A G MTMR1 Silent p.S73S 0.93 TCGA-UB-A7MB-01 X 151123163 151123163 C A GABRE 3'UTR 0.84 TCGA-UB-A7MB-01 X 153073936 153073936 C - PDZD4 Frame_Shift_Del p.D59Tfs*86 0.48 TCGA-UB-A7MB-01 X 153537743 153537743 T G TKTL1 Missense_Mutation p.L100R 0.08 deleterious(0) probably_damaging(0.995) TCGA-UB-A7MB-01 X 153996705 153996705 A G DKC1 Missense_Mutation p.K257E 0.90 tolerated(0.21) benign(0.006) TCGA-UB-A7MB-01 X 19379014 19379014 A T PDHA1 3'UTR 0.92 TCGA-UB-A7MB-01 X 23019627 23019627 A G DDX53 Missense_Mutation p.S485G 0.92 deleterious(0.01) probably_damaging(0.99) TCGA-UB-A7MB-01 X 37027900 37027900 C T FAM47C Missense_Mutation p.H473Y 0.91 tolerated_low_confidence(0.5) benign(0.138) TCGA-UB-A7MB-01 X 39933595 39933595 G C BCOR Missense_Mutation p.P335R 0.10 tolerated(0.06) probably_damaging(0.999) TCGA-UB-A7MB-01 X 47074244 47074244 G A UBA1 Silent p.V1031V 0.96 TCGA-UB-A7MB-01 X 48558575 48558575 A T SUV39H1 Nonsense_Mutation p.K87* 0.91 TCGA-UB-A7MB-01 X 53106453 53106453 T C GPR173 Missense_Mutation p.M217T 0.89 deleterious(0) probably_damaging(0.926) TCGA-UB-A7MB-01 X 54955840 54955840 A T TRO Missense_Mutation p.T895S 1.00 deleterious(0.04) benign(0) TCGA-UB-A7MB-01 X 5810965 5810965 T A NLGN4X Missense_Mutation p.I782F 0.85 deleterious_low_confidence(0.01) probably_damaging(0.921) TCGA-UB-A7MB-01 X 63490847 63490847 C G MTMR8 Missense_Mutation p.D530H 0.94 tolerated(0.86) benign(0.003) TCGA-UB-A7MB-01 X 65414937 65414937 C A HEPH Intron 0.89 TCGA-UB-A7MB-01 X 66937427 66937427 A C AR Silent p.R761R 0.88 TCGA-UB-A7MB-01 X 73812565 73812565 T A RLIM Silent p.S195S 0.82 TCGA-UB-A7MB-01 X 76938245 76938245 T A ATRX Nonsense_Mutation p.R835* 0.98 TCGA-UB-A7MB-01 X 79700385 79700385 A T FAM46D 3'UTR 0.90 TCGA-UB-A7MB-01 X 79979304 79979304 T C BRWD3 Silent p.T531T 0.95 TCGA-UB-A7MB-01 X 79999579 79999579 T C BRWD3 Silent p.A255A 0.07 TCGA-UB-A7MB-01 X 83390124 83390124 A C RPS6KA6 Missense_Mutation p.L199R 0.89 deleterious(0) probably_damaging(1) TCGA-UB-A7MB-01 X 85769362 85769362 G T DACH2 Missense_Mutation p.G203V 0.89 deleterious(0) possibly_damaging(0.581) TCGA-UB-A7MB-01 X 8767070 8767070 T A FAM9A Missense_Mutation p.R53W 0.90 deleterious_low_confidence(0) possibly_damaging(0.709) TCGA-UB-A7MB-01 X 91873834 91873834 C T PCDH11X Silent p.P1313P 0.95 TCGA-UB-A7MC-01 10 63851284 63851284 T C ARID5B Missense_Mutation p.S688P 0.07 deleterious(0) probably_damaging(0.958) TCGA-UB-A7MC-01 10 7205790 7205790 T - SFMBT2 Frame_Shift_Del p.K876Sfs*36 0.33 TCGA-UB-A7MC-01 10 99343487 99343487 G A ANKRD2 3'UTR 0.29 TCGA-UB-A7MC-01 11 66135014 66135014 A G SLC29A2 Silent p.F218F 0.88 TCGA-UB-A7MC-01 11 6704594 6704594 A T MRPL17 5'UTR 0.43 TCGA-UB-A7MC-01 11 71820004 71820004 C A LRTOMT 3'UTR 0.55 TCGA-UB-A7MC-01 12 101561932 101561932 C - SLC5A8 Frame_Shift_Del p.G421Vfs*26 0.22 TCGA-UB-A7MC-01 12 102439885 102439885 G C CCDC53 Missense_Mutation p.L55V 0.56 tolerated(0.09) possibly_damaging(0.899) TCGA-UB-A7MC-01 12 104048376 104048376 T C STAB2 Missense_Mutation p.V484A 0.29 tolerated(1) benign(0.032) TCGA-UB-A7MC-01 12 123464035 123464035 A T OGFOD2 3'UTR 0.30 TCGA-UB-A7MC-01 12 131285985 131285985 C G STX2 Missense_Mutation p.G171A 0.08 deleterious(0.01) benign(0.366) TCGA-UB-A7MC-01 12 20858984 20858984 C T SLCO1C1 Missense_Mutation p.L125F 0.21 deleterious(0.01) benign(0.337) TCGA-UB-A7MC-01 12 54576393 54576393 T G SMUG1 Missense_Mutation p.E100D 0.27 tolerated(0.12) probably_damaging(0.979) TCGA-UB-A7MC-01 12 94703723 94703723 T A CCDC41 Missense_Mutation p.M658L 0.39 tolerated(0.42) benign(0.001) TCGA-UB-A7MC-01 13 100925472 100925472 C A PCCA Silent p.R313R 0.32 TCGA-UB-A7MC-01 13 109707405 109707405 G A MYO16 Silent p.K998K 0.60 TCGA-UB-A7MC-01 13 114751254 114751254 T G RASA3 Missense_Mutation p.K754T 0.62 tolerated(0.57) possibly_damaging(0.473) TCGA-UB-A7MC-01 13 96443505 96443505 C T DNAJC3 3'UTR 0.41 TCGA-UB-A7MC-01 14 20249255 20249255 C A OR4M1 Nonsense_Mutation p.Y258* 0.22 TCGA-UB-A7MC-01 14 57268457 57268457 A G OTX2 Missense_Mutation p.L297S 0.06 deleterious(0) probably_damaging(0.992) TCGA-UB-A7MC-01 15 34376643 34376643 C T EMC7 Silent p.L207L 0.28 TCGA-UB-A7MC-01 15 41800366 41800366 A G LTK Missense_Mutation p.C384R 0.33 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-UB-A7MC-01 15 42378519 42378519 A G PLA2G4D Silent p.Y93Y 0.60 TCGA-UB-A7MC-01 15 83805347 83805347 C T TM6SF1 Missense_Mutation p.P346S 0.04 deleterious(0.02) possibly_damaging(0.511) TCGA-UB-A7MC-01 15 89182609 89182609 C T ISG20 Silent p.S4S 0.72 TCGA-UB-A7MC-01 16 30997473 30997473 A - HSD3B7 Frame_Shift_Del p.D91Tfs*22 0.20 TCGA-UB-A7MC-01 16 71967898 71967898 T A RP11-498D10.6 3'Flank 0.34 TCGA-UB-A7MC-01 16 89350329 89350329 G A ANKRD11 Missense_Mutation p.A874V 0.25 probably_damaging(0.993) TCGA-UB-A7MC-01 16 89724816 89724816 A T SPATA33 Silent p.A65A 0.61 TCGA-UB-A7MC-01 17 27380528 27380528 G A PIPOX Missense_Mutation p.S192N 0.48 tolerated(0.39) benign(0.032) TCGA-UB-A7MC-01 17 44109414 44109414 T C KANSL1 Missense_Mutation p.Q1030R 0.35 tolerated(0.49) benign(0.022) TCGA-UB-A7MC-01 17 5290351 5290351 G T NUP88 Missense_Mutation p.Q666K 0.93 tolerated(0.2) benign(0.1) TCGA-UB-A7MC-01 17 72926856 72926856 G C OTOP2 Missense_Mutation p.A376P 0.51 deleterious(0) probably_damaging(0.973) TCGA-UB-A7MC-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.95 deleterious(0) probably_damaging(1) TCGA-UB-A7MC-01 18 29264480 29264480 A T B4GALT6 5'UTR 0.55 TCGA-UB-A7MC-01 18 44336535 44336535 G A ST8SIA5 5'UTR 0.64 TCGA-UB-A7MC-01 18 8783884 8783884 C T SOGA2 Silent p.S258S 0.37 TCGA-UB-A7MC-01 19 10906053 10906053 G T DNM2 Missense_Mutation p.E378D 0.64 tolerated(0.33) benign(0.111) TCGA-UB-A7MC-01 1 100316444 100316444 A G AGL 5'UTR 0.47 TCGA-UB-A7MC-01 1 109794350 109794350 A G CELSR2 Missense_Mutation p.D550G 0.37 tolerated(0.24) benign(0.009) TCGA-UB-A7MC-01 1 12942131 12942131 C G PRAMEF4 Missense_Mutation p.C140S 0.67 tolerated(0.8) benign(0.065) TCGA-UB-A7MC-01 1 150705417 150705417 A G CTSS 3'UTR 0.20 TCGA-UB-A7MC-01 1 152748923 152748923 A G LCE1F Missense_Mutation p.T26A 0.17 tolerated_low_confidence(0.13) unknown(0) TCGA-UB-A7MC-01 1 170688864 170688864 C A PRRX1 Intron 0.10 TCGA-UB-A7MC-01 1 211749002 211749002 G T SLC30A1 Missense_Mutation p.Q418K 0.96 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MC-01 1 228494331 228494331 C T OBSCN Missense_Mutation p.T4930I 0.55 benign(0.285) TCGA-UB-A7MC-01 1 33087489 33087489 C A ZBTB8OS Nonsense_Mutation p.E172* 0.51 TCGA-UB-A7MC-01 1 67895954 67895954 G T SERBP1 Silent p.G10G 0.37 TCGA-UB-A7MC-01 20 30538175 30538175 T C PDRG1 Missense_Mutation p.T35A 0.67 tolerated(0.7) benign(0.009) TCGA-UB-A7MC-01 20 35269783 35269783 T A SLA2 Splice_Site 0.53 TCGA-UB-A7MC-01 20 35769604 35769604 C T MROH8 Silent p.L510L 0.26 TCGA-UB-A7MC-01 20 44511960 44511960 C A ZSWIM1 Missense_Mutation p.H243Q 0.23 deleterious(0.05) probably_damaging(0.976) TCGA-UB-A7MC-01 20 46265070 46265070 A G NCOA3 Missense_Mutation p.K647R 0.62 tolerated(0.12) probably_damaging(1) TCGA-UB-A7MC-01 20 4680289 4680289 C T PRNP Silent p.F141F 0.26 TCGA-UB-A7MC-01 20 57829551 57829551 A G ZNF831 Missense_Mutation p.Y1596C 0.32 tolerated(0.07) benign(0.008) TCGA-UB-A7MC-01 20 60318687 60318687 G T CDH4 Missense_Mutation p.G80W 0.27 deleterious(0.02) possibly_damaging(0.823) TCGA-UB-A7MC-01 22 25023302 25023302 G A GGT1 Intron 0.23 TCGA-UB-A7MC-01 2 108881765 108881765 G A SULT1C3 Silent p.K291K 0.33 TCGA-UB-A7MC-01 2 168104195 168104195 C T XIRP2 Missense_Mutation p.S2098L 0.29 possibly_damaging(0.818) TCGA-UB-A7MC-01 2 173916573 173916573 G T RAPGEF4 3'UTR 0.23 TCGA-UB-A7MC-01 2 189871670 189871670 C A COL3A1 Missense_Mutation p.A1070D 0.53 probably_damaging(0.966) TCGA-UB-A7MC-01 2 19553505 19553505 T C OSR1 Missense_Mutation p.Y21C 0.12 deleterious_low_confidence(0.05) benign(0.111) TCGA-UB-A7MC-01 2 232577559 232577559 T C PTMA Nonstop_Mutation p.*112Qext*9 0.10 TCGA-UB-A7MC-01 3 101136470 101136470 T C SENP7 Missense_Mutation p.E150G 0.26 tolerated(0.11) benign(0.231) TCGA-UB-A7MC-01 3 105377716 105377716 G A CBLB 3'UTR 0.21 TCGA-UB-A7MC-01 3 151161484 151161484 G A IGSF10 Missense_Mutation p.R1751C 0.25 deleterious(0) probably_damaging(0.953) TCGA-UB-A7MC-01 3 39226567 39226567 G T XIRP1 Missense_Mutation p.A1457D 0.43 deleterious(0.02) benign(0.231) TCGA-UB-A7MC-01 3 41266113 41266113 C G CTNNB1 Missense_Mutation p.S37C 0.43 deleterious(0) probably_damaging(0.986) TCGA-UB-A7MC-01 3 49691439 49691439 T C BSN Missense_Mutation p.S1484P 0.09 unknown(0) TCGA-UB-A7MC-01 3 58517052 58517052 G T ACOX2 Missense_Mutation p.Q249K 0.38 tolerated(0.31) benign(0.028) TCGA-UB-A7MC-01 4 10445315 10445315 G C ZNF518B Missense_Mutation p.L880V 0.13 tolerated(0.29) benign(0.003) TCGA-UB-A7MC-01 4 20490566 20490566 A - SLIT2 Frame_Shift_Del p.N246Mfs*2 0.29 TCGA-UB-A7MC-01 4 71202005 71202005 C T CABS1 3'UTR 0.38 TCGA-UB-A7MC-01 5 140167835 140167835 C G PCDHA1 Missense_Mutation p.H654D 0.62 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-UB-A7MC-01 5 140562669 140562669 C T PCDHB16 Missense_Mutation p.R179W 0.20 deleterious_low_confidence(0) possibly_damaging(0.832) TCGA-UB-A7MC-01 5 160047535 160047535 C A ATP10B Missense_Mutation p.Q745H 0.29 deleterious(0.04) benign(0.159) TCGA-UB-A7MC-01 5 74998430 74998430 C T POC5 Silent p.K171K 0.29 TCGA-UB-A7MC-01 6 132938951 132938951 A C TAAR2 Missense_Mutation p.F132V 0.06 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MC-01 6 32906517 32906518 - GCCCATT HLA-DMB Frame_Shift_Ins p.L94Qfs*35 0.31 TCGA-UB-A7MC-01 6 36168416 36168416 A G BRPF3 Missense_Mutation p.H106R 0.03 tolerated(0.18) benign(0.197) TCGA-UB-A7MC-01 6 64401788 64401788 C G PHF3 Missense_Mutation p.T784S 0.48 tolerated(0.13) benign(0.025) TCGA-UB-A7MC-01 7 107642432 107642432 C T LAMB1 Intron 0.48 TCGA-UB-A7MC-01 7 127999248 127999248 C T PRRT4 Missense_Mutation p.E238K 0.61 tolerated_low_confidence(0.07) unknown(0) TCGA-UB-A7MC-01 7 22767222 22767222 T A IL6 Missense_Mutation p.I60N 0.67 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MC-01 7 73008106 73008106 A G MLXIPL 3'UTR 0.62 TCGA-UB-A7MC-01 7 99662023 99662023 G C ZSCAN21 Missense_Mutation p.G402A 0.28 tolerated(0.72) possibly_damaging(0.9) TCGA-UB-A7MC-01 8 124268401 124268401 A T ZHX1 5'UTR 0.55 TCGA-UB-A7MC-01 8 124340448 124340448 C T ATAD2 Missense_Mutation p.D1284N 0.25 tolerated(0.19) benign(0.001) TCGA-UB-A7MC-01 8 13425567 13425567 C G C8orf48 3'UTR 0.22 TCGA-UB-A7MC-01 8 3216738 3216738 G A CSMD1 Silent p.A1080A 0.27 TCGA-UB-A7MC-01 8 41554074 41554074 C G ANK1 Missense_Mutation p.G964R 0.37 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MC-01 8 48792161 48792176 TCCTCCAGACTGCCTC - PRKDC Frame_Shift_Del p.G1703Dfs*35 0.18 TCGA-UB-A7MC-01 9 35841187 35841187 G T TMEM8B 5'UTR 0.39 TCGA-UB-A7MC-01 9 96416768 96416768 C G PHF2 Missense_Mutation p.S288C 0.67 deleterious(0.02) unknown(0) TCGA-UB-A7MC-01 X 108673578 108673578 G A GUCY2F Silent p.D583D 0.08 TCGA-UB-A7MC-01 X 152615207 152615207 G C ZNF275 3'UTR 0.96 TCGA-UB-A7MC-01 X 53277343 53277343 C T IQSEC2 Silent p.R845R 0.91 TCGA-UB-A7MC-01 X 7811240 7811240 G A VCX 5'UTR 0.07 TCGA-UB-A7MD-01 10 23607744 23607744 C A C10orf67 3'UTR 0.27 TCGA-UB-A7MD-01 10 50369542 50369542 G A C10orf128 Intron 0.47 TCGA-UB-A7MD-01 10 5772683 5772683 A C FAM208B Missense_Mutation p.S241R 0.23 tolerated(0.1) benign(0.156) TCGA-UB-A7MD-01 10 70507323 70507323 G A CCAR1 Missense_Mutation p.A276T 0.15 tolerated(0.13) benign(0.354) TCGA-UB-A7MD-01 10 76865548 76865548 C T DUSP13 Intron 0.46 TCGA-UB-A7MD-01 11 35308464 35308464 C G SLC1A2 Missense_Mutation p.E376Q 0.40 deleterious(0) probably_damaging(1) TCGA-UB-A7MD-01 11 55587559 55587559 T A OR5D18 Missense_Mutation p.W152R 0.33 deleterious(0) possibly_damaging(0.873) TCGA-UB-A7MD-01 11 57508993 57508993 A G C11orf31 5'Flank 0.42 TCGA-UB-A7MD-01 11 6477606 6477606 C A TRIM3 Silent p.V450V 0.08 TCGA-UB-A7MD-01 11 68455540 68455540 G A GAL Silent p.E65E 0.36 TCGA-UB-A7MD-01 12 104474603 104474604 AA - HCFC2 Frame_Shift_Del p.N255Qfs*12 0.23 TCGA-UB-A7MD-01 12 109283278 109283278 C T DAO Missense_Mutation p.R115W 0.17 deleterious(0) probably_damaging(0.998) TCGA-UB-A7MD-01 12 54757494 54757494 G T GPR84 Missense_Mutation p.Q48K 0.24 deleterious(0.04) benign(0.119) TCGA-UB-A7MD-01 12 55820492 55820492 T C OR6C76 Missense_Mutation p.V152A 0.30 deleterious_low_confidence(0.04) benign(0.314) TCGA-UB-A7MD-01 12 62979151 62979151 A T MON2 Missense_Mutation p.N1593Y 0.32 deleterious(0) benign(0.269) TCGA-UB-A7MD-01 12 7051012 7051012 G C ATN1 3'UTR 0.19 TCGA-UB-A7MD-01 12 72030765 72030766 - ATTA ZFC3H1 Frame_Shift_Ins p.L601Nfs*8 0.17 TCGA-UB-A7MD-01 12 93236314 93236314 T A EEA1 Missense_Mutation p.Q281L 0.29 deleterious(0) probably_damaging(0.998) TCGA-UB-A7MD-01 13 108882138 108882138 G T ABHD13 Missense_Mutation p.G191V 0.20 deleterious(0) probably_damaging(1) TCGA-UB-A7MD-01 13 111532383 111532383 G C ANKRD10 Silent p.S288S 0.33 TCGA-UB-A7MD-01 13 37605935 37605935 T C SUPT20H Missense_Mutation p.K269E 0.28 deleterious(0.02) benign(0.311) TCGA-UB-A7MD-01 13 99533811 99533811 C T DOCK9 Splice_Site p.X915_splice 0.27 TCGA-UB-A7MD-01 14 107048766 107048766 C T IGHV3-53 Missense_Mutation p.R85Q 0.09 deleterious_low_confidence(0.02) benign(0.361) TCGA-UB-A7MD-01 14 107131127 107131127 C T IGHV3-66 Missense_Mutation p.R85Q 0.14 deleterious_low_confidence(0.03) possibly_damaging(0.801) TCGA-UB-A7MD-01 14 23495455 23495455 T C PSMB5 Missense_Mutation p.Y212C 0.22 tolerated(0.28) benign(0.012) TCGA-UB-A7MD-01 14 64990377 64990377 T A ZBTB1 3'UTR 0.34 TCGA-UB-A7MD-01 14 65398907 65398907 A G CHURC1 Missense_Mutation p.I128V 0.30 tolerated(0.48) benign(0.001) TCGA-UB-A7MD-01 15 24923800 24923800 C A NPAP1 Missense_Mutation p.T929K 0.21 tolerated(0.21) benign(0.052) TCGA-UB-A7MD-01 15 42178394 42178394 G A SPTBN5 Silent p.T353T 0.27 TCGA-UB-A7MD-01 15 42280320 42280320 C A PLA2G4E Silent p.L586L 0.41 TCGA-UB-A7MD-01 15 48060868 48060868 C A SEMA6D Missense_Mutation p.T619K 0.24 tolerated(0.92) benign(0.118) TCGA-UB-A7MD-01 15 57730466 57730466 A G CGNL1 Missense_Mutation p.N90S 0.14 tolerated(0.11) benign(0.002) TCGA-UB-A7MD-01 15 83932654 83932654 C T BNC1 Missense_Mutation p.C450Y 0.28 tolerated(1) benign(0.001) TCGA-UB-A7MD-01 15 85664189 85664189 G A PDE8A Silent p.L632L 0.40 TCGA-UB-A7MD-01 16 1306673 1306673 C T TPSD1 Missense_Mutation p.A80V 0.34 deleterious(0.01) benign(0.264) TCGA-UB-A7MD-01 16 1826218 1826218 C T EME2 Silent p.L373L 0.35 TCGA-UB-A7MD-01 16 23535676 23535676 C A EARS2 3'UTR 0.26 TCGA-UB-A7MD-01 16 31927163 31927163 T G ZNF267 Missense_Mutation p.C531W 0.24 tolerated(0.26) benign(0.44) TCGA-UB-A7MD-01 16 3350103 3350103 A T TIGD7 Missense_Mutation p.L171Q 0.34 tolerated(0.41) probably_damaging(0.959) TCGA-UB-A7MD-01 16 3613898 3613898 G T NLRC3 Missense_Mutation p.T394K 0.41 tolerated(0.77) benign(0.018) TCGA-UB-A7MD-01 16 460264 460264 G T DECR2 Missense_Mutation p.C120F 0.07 deleterious(0) probably_damaging(0.994) TCGA-UB-A7MD-01 16 57717987 57717987 G T GPR97 Missense_Mutation p.G342V 0.28 deleterious(0) probably_damaging(0.976) TCGA-UB-A7MD-01 16 64982614 64982614 T C CDH11 Intron 0.30 TCGA-UB-A7MD-01 16 66945111 66945111 G A CDH16 Missense_Mutation p.T633M 0.33 deleterious(0.02) probably_damaging(0.937) TCGA-UB-A7MD-01 16 684899 684899 G A C16orf13 Intron 0.42 TCGA-UB-A7MD-01 16 709346 709346 G A WDR90 Missense_Mutation p.V1052I 0.26 tolerated(1) benign(0) TCGA-UB-A7MD-01 16 7760685 7760685 G T RBFOX1 Missense_Mutation p.V399F 0.24 tolerated_low_confidence(0.12) probably_damaging(0.997) TCGA-UB-A7MD-01 16 89813065 89813065 T A FANCA Missense_Mutation p.D1147V 0.21 tolerated(0.08) possibly_damaging(0.804) TCGA-UB-A7MD-01 17 17721042 17721042 C - SREBF1 Frame_Shift_Del p.E488Sfs*240 0.32 TCGA-UB-A7MD-01 17 33495177 33495177 C G UNC45B Missense_Mutation p.L417V 0.34 tolerated(0.21) benign(0.252) TCGA-UB-A7MD-01 17 40010438 40010438 T C KLHL11 Missense_Mutation p.T561A 0.28 deleterious(0.04) benign(0.132) TCGA-UB-A7MD-01 17 42266396 42266396 C T TMUB2 Silent p.D14D 0.25 TCGA-UB-A7MD-01 17 46878909 46878909 A T TTLL6 Missense_Mutation p.V153E 0.42 deleterious(0) probably_damaging(0.997) TCGA-UB-A7MD-01 17 46988176 46988176 C T UBE2Z Silent p.I108I 0.24 TCGA-UB-A7MD-01 17 7137468 7137468 G A DVL2 Silent p.I38I 0.31 TCGA-UB-A7MD-01 17 72233606 72233606 G T TTYH2 Missense_Mutation p.M196I 0.30 tolerated(0.23) benign(0.004) TCGA-UB-A7MD-01 17 73727379 73727379 G A ITGB4 Missense_Mutation p.R382Q 0.33 tolerated(0.12) benign(0.119) TCGA-UB-A7MD-01 17 74290071 74290071 T A QRICH2 Missense_Mutation p.H80L 0.38 deleterious(0.01) benign(0.031) TCGA-UB-A7MD-01 17 7579591 7579591 C T TP53 Splice_Site p.X33_splice 0.29 TCGA-UB-A7MD-01 17 76433836 76433836 G T DNAH17 Missense_Mutation p.P3968T 0.33 benign(0.12) TCGA-UB-A7MD-01 18 14764069 14764069 C A ANKRD30B Missense_Mutation p.S402Y 0.34 deleterious(0) probably_damaging(0.989) TCGA-UB-A7MD-01 18 24496571 24496571 G A CHST9 Silent p.V328V 0.22 TCGA-UB-A7MD-01 18 33690989 33690989 T A SLC39A6 Intron 0.36 TCGA-UB-A7MD-01 18 44560133 44560133 A T TCEB3B Silent p.A501A 0.22 TCGA-UB-A7MD-01 18 47788414 47788414 C A CCDC11 Missense_Mutation p.R82I 0.36 deleterious(0) probably_damaging(0.979) TCGA-UB-A7MD-01 19 1083294 1083296 TCA - HMHA1 In_Frame_Del p.I983del 0.23 TCGA-UB-A7MD-01 19 11624014 11624014 G A ECSIT Missense_Mutation p.R199C 0.32 deleterious(0) probably_damaging(1) TCGA-UB-A7MD-01 19 16008270 16008270 A - CYP4F2 Frame_Shift_Del p.F51Sfs*24 0.11 TCGA-UB-A7MD-01 19 408161 408161 G A C2CD4C Silent p.A67A 0.33 TCGA-UB-A7MD-01 19 53304474 53304474 T A ZNF28 Silent p.V208V 0.32 TCGA-UB-A7MD-01 19 53612425 53612425 C T ZNF415 Silent p.R291R 0.29 TCGA-UB-A7MD-01 19 57325652 57325652 C T PEG3 Silent p.R1386R 0.30 TCGA-UB-A7MD-01 19 6681964 6681966 GAT - C3 In_Frame_Del p.I1446del 0.32 TCGA-UB-A7MD-01 1 172633481 172633481 C T FASLG Silent p.P134P 0.22 TCGA-UB-A7MD-01 1 226111752 226111752 G A RP4-559A3.7 Missense_Mutation p.T20M 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.499) TCGA-UB-A7MD-01 1 230914797 230914797 C A CAPN9 Missense_Mutation p.D344E 0.40 tolerated(0.29) benign(0.02) TCGA-UB-A7MD-01 1 23689096 23689096 C T ZNF436 Missense_Mutation p.S260N 0.40 tolerated(0.37) benign(0.245) TCGA-UB-A7MD-01 1 248458788 248458788 G T OR2T12 Silent p.A31A 0.24 TCGA-UB-A7MD-01 1 248458789 248458789 G A OR2T12 Missense_Mutation p.A31V 0.23 tolerated(0.96) benign(0.004) TCGA-UB-A7MD-01 1 27106592 27106592 C G ARID1A Missense_Mutation p.S2068W 0.43 probably_damaging(0.998) TCGA-UB-A7MD-01 1 27942229 27942229 C G FGR Missense_Mutation p.G270A 0.28 deleterious(0.02) possibly_damaging(0.755) TCGA-UB-A7MD-01 1 32207460 32207460 C G BAI2 Missense_Mutation p.G509A 0.30 deleterious(0.02) probably_damaging(1) TCGA-UB-A7MD-01 1 39339009 39339009 G A MYCBP 5'UTR 0.23 TCGA-UB-A7MD-01 1 78479284 78479284 C T DNAJB4 Missense_Mutation p.A254V 0.70 tolerated(0.17) benign(0.03) TCGA-UB-A7MD-01 1 95357851 95357859 TTTCACTGT - SLC44A3 In_Frame_Del p.T547_F549del 0.23 TCGA-UB-A7MD-01 20 18464200 18464200 T C POLR3F Nonstop_Mutation p.*317Qext*1 0.20 TCGA-UB-A7MD-01 20 31196426 31196426 G A RP11-410N8.4 Silent p.L115L 0.25 TCGA-UB-A7MD-01 20 44592256 44592256 C A ZNF335 Missense_Mutation p.R463S 0.30 deleterious(0) probably_damaging(0.997) TCGA-UB-A7MD-01 20 46365635 46365635 G A SULF2 Missense_Mutation p.A76V 0.26 tolerated(0.13) benign(0.013) TCGA-UB-A7MD-01 20 58520240 58520240 T A FAM217B 3'UTR 0.05 TCGA-UB-A7MD-01 21 10862930 10862930 A G IGHV1OR21-1 Missense_Mutation p.S76G 0.10 tolerated(0.67) benign(0.004) TCGA-UB-A7MD-01 22 22892516 22892516 G A PRAME Silent p.L195L 0.25 TCGA-UB-A7MD-01 22 37540187 37540187 C T IL2RB Missense_Mutation p.R9H 0.19 tolerated(0.57) benign(0.001) TCGA-UB-A7MD-01 2 120385299 120385299 G A PCDP1 Silent p.S529S 0.34 TCGA-UB-A7MD-01 2 1668790 1668790 C T PXDN Missense_Mutation p.V450M 0.32 deleterious(0) probably_damaging(0.995) TCGA-UB-A7MD-01 2 168098387 168098387 C A XIRP2 Missense_Mutation p.D381E 0.33 benign(0.149) TCGA-UB-A7MD-01 2 168106758 168106758 A G XIRP2 Silent p.E2952E 0.26 TCGA-UB-A7MD-01 2 186671281 186671281 G C FSIP2 Missense_Mutation p.E5839Q 0.09 benign(0.042) TCGA-UB-A7MD-01 2 203644170 203644170 C T ICA1L 3'UTR 0.23 TCGA-UB-A7MD-01 2 203834763 203834763 G A CARF Missense_Mutation p.V359I 0.23 tolerated(0.58) benign(0.442) TCGA-UB-A7MD-01 2 207174747 207174747 G A ZDBF2 Nonsense_Mutation p.W1832* 0.26 TCGA-UB-A7MD-01 2 219001157 219001157 T A CXCR2 3'UTR 0.34 TCGA-UB-A7MD-01 2 219127715 219127715 T G GPBAR1 Missense_Mutation p.L90V 0.33 tolerated(0.8) possibly_damaging(0.472) TCGA-UB-A7MD-01 2 222347339 222347339 G T EPHA4 Missense_Mutation p.P351T 0.38 deleterious(0) probably_damaging(0.995) TCGA-UB-A7MD-01 2 223169197 223169197 A G CCDC140 3'UTR 0.35 TCGA-UB-A7MD-01 2 228855885 228855885 G A SPHKAP Missense_Mutation p.P1597L 0.25 tolerated(1) benign(0) TCGA-UB-A7MD-01 2 230411752 230411752 C T DNER Missense_Mutation p.V302M 0.39 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MD-01 2 233632998 233632998 A G KCNJ13 Missense_Mutation p.L329P 0.36 tolerated(0.22) benign(0.053) TCGA-UB-A7MD-01 2 238256451 238256451 C G COL6A3 Missense_Mutation p.R2343T 0.23 unknown(0) TCGA-UB-A7MD-01 2 27460247 27460247 G T CAD Missense_Mutation p.G1466V 0.39 deleterious(0) probably_damaging(0.997) TCGA-UB-A7MD-01 2 55825809 55825809 C T SMEK2 Missense_Mutation p.V222I 0.34 deleterious(0.03) possibly_damaging(0.852) TCGA-UB-A7MD-01 3 119631579 119631579 A C GSK3B Missense_Mutation p.F229L 0.26 deleterious(0.02) probably_damaging(1) TCGA-UB-A7MD-01 3 150644391 150644391 C T CLRN1 3'Flank 0.25 TCGA-UB-A7MD-01 3 193176623 193176623 A T ATP13A4 Intron 0.50 TCGA-UB-A7MD-01 3 41266097 41266097 G A CTNNB1 Missense_Mutation p.D32N 0.30 deleterious(0.05) possibly_damaging(0.686) TCGA-UB-A7MD-01 3 46415788 46415788 T C CCR5 3'UTR 0.23 TCGA-UB-A7MD-01 3 52443900 52443900 C T BAP1 5'UTR 0.37 TCGA-UB-A7MD-01 3 64633644 64633644 G T ADAMTS9 Missense_Mutation p.A561D 0.16 deleterious(0.01) probably_damaging(1) TCGA-UB-A7MD-01 3 97806470 97806470 G T OR5AC2 Missense_Mutation p.V152L 0.33 tolerated(0.36) benign(0.006) TCGA-UB-A7MD-01 4 123267816 123267816 A G KIAA1109 Missense_Mutation p.M4258V 0.33 possibly_damaging(0.459) TCGA-UB-A7MD-01 4 30724818 30724818 C A PCDH7 Missense_Mutation p.L592M 0.28 tolerated(0.05) benign(0.424) TCGA-UB-A7MD-01 5 111600696 111600696 C A EPB41L4A Missense_Mutation p.D151Y 0.24 deleterious(0) probably_damaging(0.998) TCGA-UB-A7MD-01 5 131324528 131324528 G A ACSL6 Missense_Mutation p.P208S 0.28 tolerated(0.19) possibly_damaging(0.46) TCGA-UB-A7MD-01 5 136314459 136314459 G A SPOCK1 Missense_Mutation p.R402W 0.21 deleterious_low_confidence(0.05) benign(0.115) TCGA-UB-A7MD-01 5 140167891 140167891 C T PCDHA1 Silent p.S672S 0.20 TCGA-UB-A7MD-01 5 158158108 158158108 C G EBF1 Missense_Mutation p.R365P 0.26 deleterious(0) probably_damaging(0.995) TCGA-UB-A7MD-01 5 170837534 170837534 A G NPM1 Missense_Mutation p.I284V 0.33 tolerated(0.24) benign(0.012) TCGA-UB-A7MD-01 5 36686198 36686198 G A SLC1A3 Missense_Mutation p.G486R 0.07 deleterious(0) probably_damaging(1) TCGA-UB-A7MD-01 6 13620548 13620548 C G AL441883.1 Missense_Mutation p.L76F 0.05 unknown(0) TCGA-UB-A7MD-01 6 160454117 160454117 A C IGF2R Silent p.R397R 0.56 TCGA-UB-A7MD-01 6 30156977 30156977 C A TRIM26 Splice_Site p.X302_splice 0.21 TCGA-UB-A7MD-01 6 37448869 37448869 C T CMTR1 3'UTR 0.09 TCGA-UB-A7MD-01 6 38795995 38795995 A G DNAH8 Silent p.E1156E 0.21 TCGA-UB-A7MD-01 6 41250178 41250178 C G TREM1 Missense_Mutation p.E121Q 0.27 deleterious(0.04) possibly_damaging(0.567) TCGA-UB-A7MD-01 6 71009833 71009833 C T COL9A1 Missense_Mutation p.R71K 0.35 unknown(0) TCGA-UB-A7MD-01 6 74227627 74227627 G A EEF1A1 Missense_Mutation p.T432I 0.29 deleterious_low_confidence(0.03) possibly_damaging(0.58) TCGA-UB-A7MD-01 6 74227628 74227628 T A EEF1A1 Missense_Mutation p.T432S 0.30 deleterious_low_confidence(0) benign(0.007) TCGA-UB-A7MD-01 6 81053670 81053670 T A BCKDHB 3'UTR 0.38 TCGA-UB-A7MD-01 6 90452952 90452952 C G MDN1 Silent p.L1455L 0.29 TCGA-UB-A7MD-01 7 151878921 151878921 A T KMT2C Silent p.T2008T 0.36 TCGA-UB-A7MD-01 7 151878922 151878922 G A KMT2C Missense_Mutation p.T2008I 0.37 benign(0.13) TCGA-UB-A7MD-01 7 152132948 152132948 C T KMT2C 5'UTR 0.07 TCGA-UB-A7MD-01 7 24904971 24904971 T G OSBPL3 Missense_Mutation p.K221N 0.19 deleterious(0.01) benign(0.342) TCGA-UB-A7MD-01 7 87910335 87910335 A G STEAP4 Silent p.Y348Y 0.27 TCGA-UB-A7MD-01 8 133634904 133634904 C T LRRC6 Silent p.R289R 0.26 TCGA-UB-A7MD-01 8 141756887 141756887 A G PTK2 Missense_Mutation p.I497T 0.11 deleterious(0) probably_damaging(0.978) TCGA-UB-A7MD-01 8 81412438 81412438 A G ZBTB10 Missense_Mutation p.N561S 0.45 tolerated(0.09) probably_damaging(0.984) TCGA-UB-A7MD-01 9 100425320 100425320 C G NCBP1 Missense_Mutation p.N596K 0.25 tolerated(0.22) possibly_damaging(0.643) TCGA-UB-A7MD-01 9 133914252 133914252 C T LAMC3 Silent p.P326P 0.43 TCGA-UB-A7MD-01 9 138011380 138011380 C T OLFM1 Missense_Mutation p.R254C 0.24 deleterious(0) probably_damaging(0.965) TCGA-UB-A7MD-01 9 138837090 138837090 C A UBAC1 Silent p.S220S 0.43 TCGA-UB-A7MD-01 9 36630339 36630339 T G MELK Missense_Mutation p.I237S 0.33 tolerated(0.16) benign(0.052) TCGA-UB-A7MD-01 9 368247 368247 A G DOCK8 Intron 0.34 TCGA-UB-A7MD-01 9 93650155 93650155 G T SYK Missense_Mutation p.G569V 0.07 deleterious(0) probably_damaging(1) TCGA-UB-A7MD-01 X 144337477 144337477 A G SPANXN1 3'UTR 0.35 TCGA-UB-A7MD-01 X 148037267 148037267 A T AFF2 Missense_Mutation p.Q564H 0.51 deleterious(0.01) possibly_damaging(0.828) TCGA-UB-A7MD-01 X 150842573 150842573 C G PASD1 Missense_Mutation p.S697C 0.65 deleterious(0.04) possibly_damaging(0.843) TCGA-UB-A7MD-01 X 23731290 23731290 T C ACOT9 Silent p.A208A 0.69 TCGA-UB-A7MD-01 X 30326784 30326784 C A NR0B1 Missense_Mutation p.A233S 0.10 tolerated(0.1) possibly_damaging(0.582) TCGA-UB-A7MD-01 X 63410478 63410478 C T AMER1 Missense_Mutation p.D897N 0.60 deleterious(0) possibly_damaging(0.712) TCGA-UB-A7ME-01 10 104180046 104180046 C A FBXL15 5'UTR 0.33 TCGA-UB-A7ME-01 10 118202641 118202641 A T PNLIPRP3 Silent p.I93I 0.17 TCGA-UB-A7ME-01 10 5945116 5945116 G C FBXO18 Silent p.P96P 0.32 TCGA-UB-A7ME-01 10 71692351 71692351 A T COL13A1 Silent p.P562P 0.21 TCGA-UB-A7ME-01 11 3661593 3661593 A T ART5 Silent p.A22A 0.52 TCGA-UB-A7ME-01 11 61026465 61026465 G C VWCE Silent p.T850T 0.36 TCGA-UB-A7ME-01 11 69063994 69063994 A G MYEOV 3'UTR 0.78 TCGA-UB-A7ME-01 11 73008576 73008576 A G P2RY6 3'UTR 0.07 TCGA-UB-A7ME-01 11 75115172 75115172 G A RPS3 Silent p.V169V 0.11 TCGA-UB-A7ME-01 12 20792858 20792858 C A PDE3A Missense_Mutation p.H740N 0.16 deleterious(0.03) benign(0.418) TCGA-UB-A7ME-01 12 46633498 46633498 T C SLC38A1 Missense_Mutation p.N29S 0.18 tolerated(0.16) probably_damaging(0.956) TCGA-UB-A7ME-01 12 53879187 53879187 G T MAP3K12 Missense_Mutation p.S298R 0.40 deleterious(0) probably_damaging(0.997) TCGA-UB-A7ME-01 12 8807070 8807070 A T MFAP5 Silent p.A60A 0.33 TCGA-UB-A7ME-01 14 106174251 106174251 A C IGHA1 Missense_Mutation p.C180G 0.14 tolerated(0.47) possibly_damaging(0.788) TCGA-UB-A7ME-01 14 31077159 31077159 C T G2E3 Missense_Mutation p.P462S 0.11 tolerated(0.06) possibly_damaging(0.886) TCGA-UB-A7ME-01 14 50809746 50809746 G A CDKL1 Intron 0.14 TCGA-UB-A7ME-01 14 94088446 94088446 A G UNC79 Missense_Mutation p.I1446V 0.23 tolerated_low_confidence(0.77) benign(0) TCGA-UB-A7ME-01 14 95557445 95557445 T A DICER1 Missense_Mutation p.E1843D 0.20 tolerated(0.21) benign(0.07) TCGA-UB-A7ME-01 14 99641808 99641808 G C BCL11B Nonsense_Mutation p.Y455* 0.11 TCGA-UB-A7ME-01 15 35149307 35149307 T A AQR Missense_Mutation p.T1382S 0.36 tolerated(0.72) benign(0.002) TCGA-UB-A7ME-01 15 68126112 68126112 A C SKOR1 Missense_Mutation p.K849Q 0.23 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-UB-A7ME-01 15 99023922 99023922 C T FAM169B Missense_Mutation p.D31N 0.18 deleterious(0.02) probably_damaging(0.933) TCGA-UB-A7ME-01 16 2812757 2812757 C T SRRM2 Missense_Mutation p.S743F 0.24 unknown(0) TCGA-UB-A7ME-01 16 72198720 72198720 C A PMFBP1 Missense_Mutation p.Q36H 0.12 deleterious(0.02) benign(0.117) TCGA-UB-A7ME-01 17 18397733 18397733 C T LGALS9C 3'UTR 0.21 TCGA-UB-A7ME-01 17 21206497 21206497 C A MAP2K3 Silent p.I173I 0.04 TCGA-UB-A7ME-01 17 43227680 43227687 AGTGATGG - HEXIM1 3'UTR 0.14 TCGA-UB-A7ME-01 17 43592315 43592315 C T LRRC37A4P RNA 0.22 TCGA-UB-A7ME-01 17 4579352 4579352 C T PELP1 Missense_Mutation p.R320H 0.07 possibly_damaging(0.861) TCGA-UB-A7ME-01 17 60759175 60759175 A T MRC2 Intron 0.46 TCGA-UB-A7ME-01 17 61987890 61987890 A T CSHL1 Missense_Mutation p.Y66N 0.45 tolerated(0.11) possibly_damaging(0.802) TCGA-UB-A7ME-01 17 73273550 73273550 G C SLC25A19 Missense_Mutation p.L220V 0.32 tolerated(0.07) possibly_damaging(0.706) TCGA-UB-A7ME-01 17 75186883 75186883 A T SEC14L1 Splice_Site p.X22_splice 0.29 TCGA-UB-A7ME-01 17 79865686 79865686 C A PCYT2 Missense_Mutation p.R152L 0.16 deleterious(0) probably_damaging(0.982) TCGA-UB-A7ME-01 17 80039126 80039126 A - FASN Frame_Shift_Del p.L2170Pfs*48 0.20 TCGA-UB-A7ME-01 17 8216406 8216417 CGGTCACCCTGC - ARHGEF15 In_Frame_Del p.G257_A260del 0.35 TCGA-UB-A7ME-01 17 9615298 9615298 C T USP43 Silent p.S728S 0.09 TCGA-UB-A7ME-01 18 61323009 61323009 A T SERPINB3 Missense_Mutation p.F352Y 0.44 tolerated(0.74) benign(0.003) TCGA-UB-A7ME-01 18 61323101 61323101 G A SERPINB3 Silent p.R321R 0.25 TCGA-UB-A7ME-01 18 61584734 61584734 A C SERPINB10 Missense_Mutation p.E71D 0.35 tolerated(0.5) benign(0.015) TCGA-UB-A7ME-01 19 12491421 12491421 G T CTD-3105H18.14 3'UTR 0.06 TCGA-UB-A7ME-01 19 19823308 19823308 C T ZNF14 Missense_Mutation p.S261N 0.23 tolerated(0.22) probably_damaging(0.98) TCGA-UB-A7ME-01 19 2435009 2435009 T A LMNB2 Missense_Mutation p.Y282F 0.33 tolerated(0.45) benign(0.017) TCGA-UB-A7ME-01 19 31039817 31039817 C T ZNF536 Silent p.T1097T 0.17 TCGA-UB-A7ME-01 19 33210858 33210858 G T TDRD12 5'Flank 0.32 TCGA-UB-A7ME-01 19 33378692 33378692 T A CEP89 Missense_Mutation p.N644I 0.35 deleterious(0) possibly_damaging(0.604) TCGA-UB-A7ME-01 19 37734528 37734528 G C ZNF383 Missense_Mutation p.D464H 0.14 tolerated(0.54) possibly_damaging(0.607) TCGA-UB-A7ME-01 19 38900605 38900605 C A RASGRP4 3'UTR 0.25 TCGA-UB-A7ME-01 19 38945876 38945876 G C RYR1 Missense_Mutation p.G481A 0.36 probably_damaging(0.999) TCGA-UB-A7ME-01 19 41021261 41021261 G A SPTBN4 Missense_Mutation p.V937I 0.19 tolerated(0.65) benign(0.101) TCGA-UB-A7ME-01 19 44103150 44103150 G A ZNF576 Missense_Mutation p.A85T 0.28 tolerated(0.08) possibly_damaging(0.568) TCGA-UB-A7ME-01 19 50789947 50789947 A T MYH14 Missense_Mutation p.K1583M 0.30 deleterious(0) probably_damaging(0.951) TCGA-UB-A7ME-01 19 51874926 51874926 A T NKG7 3'UTR 0.24 TCGA-UB-A7ME-01 19 54672012 54672012 G A TMC4 Silent p.L234L 0.29 TCGA-UB-A7ME-01 19 9085994 9085994 T A MUC16 Missense_Mutation p.I1941F 0.51 unknown(0) TCGA-UB-A7ME-01 19 968403 968403 A T ARID3A Splice_Site p.X499_splice 0.36 TCGA-UB-A7ME-01 1 110714799 110714799 T A SLC6A17 Missense_Mutation p.I135K 0.17 deleterious(0) benign(0.388) TCGA-UB-A7ME-01 1 150788840 150788840 T A ARNT Silent p.S615S 0.17 TCGA-UB-A7ME-01 1 152276112 152276112 C T FLG Silent p.A3750A 0.11 TCGA-UB-A7ME-01 1 152278842 152278842 T A FLG Silent p.T2840T 0.23 TCGA-UB-A7ME-01 1 22021689 22021689 T - USP48 Frame_Shift_Del p.K918Rfs*8 0.22 TCGA-UB-A7ME-01 1 237872824 237872824 T G RYR2 Missense_Mutation p.F3396C 0.43 probably_damaging(0.999) TCGA-UB-A7ME-01 1 27094294 27094294 C G ARID1A Missense_Mutation p.S1001C 0.48 unknown(0) TCGA-UB-A7ME-01 1 46746117 46746117 G A LRRC41 Silent p.A624A 0.21 TCGA-UB-A7ME-01 1 47154101 47154101 T A EFCAB14 Missense_Mutation p.Q304L 0.17 deleterious(0.01) benign(0.206) TCGA-UB-A7ME-01 1 92946582 92946582 G A GFI1 Missense_Mutation p.P121L 0.19 deleterious_low_confidence(0.05) benign(0.011) TCGA-UB-A7ME-01 20 20257971 20257971 G A C20orf26 Missense_Mutation p.A889T 0.19 deleterious(0) possibly_damaging(0.571) TCGA-UB-A7ME-01 20 23360527 23360527 A C NAPB Missense_Mutation p.S238A 0.24 tolerated(0.06) benign(0.437) TCGA-UB-A7ME-01 20 23856826 23856826 T A CST5 Nonstop_Mutation p.*143Lext*9 0.39 TCGA-UB-A7ME-01 20 29978247 29978247 T A DEFB119 Missense_Mutation p.I14L 0.26 tolerated(1) unknown(0) TCGA-UB-A7ME-01 20 36642105 36642105 T A TTI1 Missense_Mutation p.Q38H 0.29 tolerated(0.14) benign(0.005) TCGA-UB-A7ME-01 20 36856566 36856566 C T KIAA1755 Missense_Mutation p.A650T 0.13 deleterious(0) probably_damaging(1) TCGA-UB-A7ME-01 20 37117219 37117219 T G RALGAPB Silent p.P48P 0.23 TCGA-UB-A7ME-01 20 43929960 43929960 C - MATN4 Splice_Site p.X256_splice 0.19 TCGA-UB-A7ME-01 20 45129982 45129982 G A ZNF334 Missense_Mutation p.R666C 0.09 tolerated(0.22) benign(0.019) TCGA-UB-A7ME-01 20 61443964 61443964 G C OGFR Missense_Mutation p.E333Q 0.40 tolerated(0.32) benign(0.255) TCGA-UB-A7ME-01 21 32490779 32490779 C A TIAM1 3'UTR 0.16 TCGA-UB-A7ME-01 21 34988699 34988699 A T CRYZL1 Intron 0.41 TCGA-UB-A7ME-01 21 44837443 44837443 C A SIK1 Missense_Mutation p.E652D 0.24 deleterious_low_confidence(0.03) benign(0.315) TCGA-UB-A7ME-01 21 46117561 46117561 C TTG KRTAP10-12 Frame_Shift_Ins p.Q149Lfs*121 0.42 TCGA-UB-A7ME-01 22 31484509 31484509 C T SMTN Missense_Mutation p.R71W 0.18 deleterious(0.01) probably_damaging(0.946) TCGA-UB-A7ME-01 22 32881139 32881139 G C FBXO7 Missense_Mutation p.E244Q 0.16 deleterious(0.02) possibly_damaging(0.852) TCGA-UB-A7ME-01 2 108443281 108443281 G A RGPD4 5'Flank 0.38 TCGA-UB-A7ME-01 2 135878431 135878431 C T RAB3GAP1 Nonsense_Mutation p.R231* 0.18 TCGA-UB-A7ME-01 2 168103964 168103964 C A XIRP2 Missense_Mutation p.A2021D 0.17 probably_damaging(0.923) TCGA-UB-A7ME-01 2 207655393 207655393 G T FASTKD2 Missense_Mutation p.G666C 0.18 deleterious(0) probably_damaging(1) TCGA-UB-A7ME-01 2 218999787 218999787 T A CXCR2 Missense_Mutation p.L88Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-UB-A7ME-01 2 234273 234273 C T SH3YL1 Splice_Site p.X98_splice 0.20 TCGA-UB-A7ME-01 2 88396229 88396229 T A SMYD1 Missense_Mutation p.F272I 0.17 deleterious(0) probably_damaging(0.93) TCGA-UB-A7ME-01 3 112357309 112357309 G A CCDC80 Missense_Mutation p.P482S 0.35 tolerated(0.09) benign(0.386) TCGA-UB-A7ME-01 3 141535712 141535712 G T GRK7 Silent p.G494G 0.20 TCGA-UB-A7ME-01 3 152884962 152884962 A T RAP2B 3'UTR 0.12 TCGA-UB-A7ME-01 3 173996849 173996849 A T NLGN1 Missense_Mutation p.H353L 0.24 tolerated(0.12) probably_damaging(0.934) TCGA-UB-A7ME-01 3 180332577 180332577 A T CCDC39 3'UTR 0.38 TCGA-UB-A7ME-01 3 42916188 42916188 T C CYP8B1 Missense_Mutation p.Y374C 0.11 deleterious(0.02) benign(0.194) TCGA-UB-A7ME-01 4 104084644 104084644 C A CENPE Missense_Mutation p.D572Y 0.24 probably_damaging(0.994) TCGA-UB-A7ME-01 4 123664496 123664496 T C BBS12 Silent p.D483D 0.28 TCGA-UB-A7ME-01 4 17625401 17625401 G T MED28 Missense_Mutation p.A173S 0.34 tolerated(0.06) probably_damaging(0.998) TCGA-UB-A7ME-01 4 188925254 188925254 A T ZFP42 3'UTR 0.22 TCGA-UB-A7ME-01 4 57179476 57179476 C A KIAA1211 Silent p.A156A 0.21 TCGA-UB-A7ME-01 4 57219583 57219583 T C AASDH Silent p.P521P 0.22 TCGA-UB-A7ME-01 4 71656987 71656987 A T RUFY3 Intron 0.22 TCGA-UB-A7ME-01 4 73148765 73148765 A C ADAMTS3 3'UTR 0.17 TCGA-UB-A7ME-01 5 140562737 140562737 T A PCDHB16 Missense_Mutation p.D201E 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-UB-A7ME-01 5 148388485 148388485 T A SH3TC2 Missense_Mutation p.Q1136L 0.41 tolerated(1) benign(0.058) TCGA-UB-A7ME-01 5 159776435 159776435 C T C1QTNF2 Missense_Mutation p.D245N 0.24 tolerated(0.08) probably_damaging(0.991) TCGA-UB-A7ME-01 5 170876191 170876191 C T FGF18 Silent p.V97V 0.17 TCGA-UB-A7ME-01 5 31799209 31799209 T A PDZD2 5'UTR 0.35 TCGA-UB-A7ME-01 5 96503531 96503531 T C RIOK2 Missense_Mutation p.E346G 0.17 tolerated(0.14) benign(0.002) TCGA-UB-A7ME-01 6 126196071 126196071 A C NCOA7 Missense_Mutation p.K103T 0.25 deleterious(0) probably_damaging(0.999) TCGA-UB-A7ME-01 6 128134892 128134892 T A THEMIS Missense_Mutation p.Q298H 0.22 tolerated(0.54) benign(0.318) TCGA-UB-A7ME-01 6 35289348 35289348 A T DEF6 3'UTR 0.50 TCGA-UB-A7ME-01 6 55620351 55620351 G A BMP5 Missense_Mutation p.R449C 0.33 deleterious(0) probably_damaging(0.977) TCGA-UB-A7ME-01 6 65707540 65707540 G A EYS Nonsense_Mutation p.Q732* 0.09 TCGA-UB-A7ME-01 6 7334305 7334305 T A CAGE1 Missense_Mutation p.K796N 0.40 deleterious(0) possibly_damaging(0.895) TCGA-UB-A7ME-01 6 90573432 90573432 G T CASP8AP2 RNA 0.32 TCGA-UB-A7ME-01 7 24881964 24881964 A T OSBPL3 Silent p.T445T 0.31 TCGA-UB-A7ME-01 7 76023205 76023205 G C SRCRB4D Silent p.P321P 0.18 TCGA-UB-A7ME-01 8 104927768 104927768 A G RIMS2 Missense_Mutation p.I620V 0.53 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-UB-A7ME-01 8 54882968 54882968 C T TCEA1 Missense_Mutation p.C294Y 0.14 deleterious(0) probably_damaging(1) TCGA-UB-A7ME-01 8 55534080 55534080 A T RP1 Missense_Mutation p.Q185L 0.54 deleterious(0.01) possibly_damaging(0.67) TCGA-UB-A7ME-01 8 92330525 92330525 G T SLC26A7 Missense_Mutation p.A187S 0.12 deleterious(0) probably_damaging(0.999) TCGA-UB-A7ME-01 9 125141054 125141054 T G PTGS1 Missense_Mutation p.V118G 0.14 tolerated(0.14) benign(0.014) TCGA-UB-A7ME-01 9 131296078 131296078 A T GLE1 Silent p.A498A 0.39 TCGA-UB-A7ME-01 9 140086995 140086995 G A TPRN Missense_Mutation p.S625L 0.09 tolerated(0.15) benign(0.088) TCGA-UB-A7ME-01 9 35841726 35841726 G A TMEM8B 5'UTR 0.23 TCGA-UB-A7ME-01 9 86616085 86616085 A T RMI1 Missense_Mutation p.R62W 0.29 deleterious(0) probably_damaging(0.986) TCGA-UB-A7ME-01 X 41069765 41069765 T A USP9X Silent p.L1673L 0.31 TCGA-UB-A7ME-01 X 90691012 90691012 G T PABPC5 Missense_Mutation p.G146C 0.69 deleterious(0.01) probably_damaging(1) TCGA-UB-A7MF-01 10 1063248 1063248 A G GTPBP4 3'UTR 0.46 TCGA-UB-A7MF-01 10 133058601 133058601 C T TCERG1L Silent p.P259P 0.38 TCGA-UB-A7MF-01 10 134999499 134999499 G A KNDC1 Missense_Mutation p.R216Q 0.21 deleterious(0.05) benign(0.008) TCGA-UB-A7MF-01 10 135053718 135053718 C G VENTX Missense_Mutation p.P229A 0.44 tolerated(0.34) benign(0.046) TCGA-UB-A7MF-01 10 24832181 24832187 TCAAGCG - KIAA1217 Frame_Shift_Del p.S1328Cfs*21 0.31 TCGA-UB-A7MF-01 10 45478109 45478109 T A RASSF4 Silent p.P93P 0.39 TCGA-UB-A7MF-01 10 48371553 48371554 TA - ZNF488 Frame_Shift_Del p.*341A 0.25 TCGA-UB-A7MF-01 10 61833020 61833020 G A ANK3 Missense_Mutation p.T2540I 0.41 benign(0.029) TCGA-UB-A7MF-01 10 70450720 70450720 A G TET1 Missense_Mutation p.T1854A 0.38 tolerated(0.39) benign(0.026) TCGA-UB-A7MF-01 11 105795190 105795190 T A GRIA4 Silent p.S514S 0.20 TCGA-UB-A7MF-01 11 111612223 111612223 T A PPP2R1B Intron 0.21 TCGA-UB-A7MF-01 11 117096683 117096683 T C PCSK7 Missense_Mutation p.N275S 0.51 tolerated(0.43) probably_damaging(0.934) TCGA-UB-A7MF-01 11 119103248 119103248 C T CBL Missense_Mutation p.R96C 0.29 deleterious(0) probably_damaging(0.983) TCGA-UB-A7MF-01 11 17099435 17099435 A G RPS13 5'Flank 0.38 TCGA-UB-A7MF-01 11 17153463 17153463 A G PIK3C2A Missense_Mutation p.L744P 0.19 tolerated(0.12) probably_damaging(1) TCGA-UB-A7MF-01 11 20057523 20057523 C A NAV2 Silent p.S952S 0.35 TCGA-UB-A7MF-01 11 47182742 47182743 - T C11orf49 Splice_Site p.X274_splice 0.16 TCGA-UB-A7MF-01 11 4825734 4825734 G A OR52R1 5'Flank 0.40 TCGA-UB-A7MF-01 11 66639215 66639215 G A PC Silent p.R88R 0.23 TCGA-UB-A7MF-01 11 73681145 73681145 G A DNAJB13 Missense_Mutation p.A313T 0.26 tolerated(0.22) possibly_damaging(0.701) TCGA-UB-A7MF-01 11 94354053 94354053 T G PIWIL4 Missense_Mutation p.S818R 0.21 tolerated(1) benign(0.002) TCGA-UB-A7MF-01 12 115109981 115109981 T A TBX3 Missense_Mutation p.T633S 0.56 tolerated(1) benign(0) TCGA-UB-A7MF-01 12 122692863 122692863 G A DIABLO 3'UTR 0.17 TCGA-UB-A7MF-01 12 22602655 22602655 T C C2CD5 3'UTR 0.18 TCGA-UB-A7MF-01 12 43846137 43846137 A T ADAMTS20 Silent p.V673V 0.21 TCGA-UB-A7MF-01 12 52648146 52648146 A G KRT121P Intron 0.15 TCGA-UB-A7MF-01 12 54367576 54367576 C T HOXC11 Missense_Mutation p.P184L 0.18 deleterious(0.05) possibly_damaging(0.52) TCGA-UB-A7MF-01 12 74933017 74933017 G T ATXN7L3B 3'UTR 0.55 TCGA-UB-A7MF-01 12 85279232 85279232 T C SLC6A15 Missense_Mutation p.K186E 0.39 tolerated(0.59) probably_damaging(0.993) TCGA-UB-A7MF-01 12 8612254 8612254 T C CLEC6A Silent p.H61H 0.35 TCGA-UB-A7MF-01 12 8672896 8672896 G T CLEC4D Missense_Mutation p.Q153H 0.13 tolerated(0.08) benign(0.126) TCGA-UB-A7MF-01 13 103328668 103328668 A T TPP2 Missense_Mutation p.H1188L 0.67 deleterious(0) probably_damaging(0.93) TCGA-UB-A7MF-01 13 113750685 113750685 G A MCF2L Missense_Mutation p.V1026I 0.10 tolerated(0.13) benign(0.197) TCGA-UB-A7MF-01 13 22077105 22077105 A G MICU2 Missense_Mutation p.I298T 0.64 tolerated(0.34) benign(0.197) TCGA-UB-A7MF-01 13 36202217 36202217 G T NBEA Splice_Site p.X2484_splice 0.31 TCGA-UB-A7MF-01 14 23894029 23894029 C G MYH7 Missense_Mutation p.K876N 0.23 deleterious(0) probably_damaging(1) TCGA-UB-A7MF-01 14 50802858 50802858 G A CDKL1 Intron 0.36 TCGA-UB-A7MF-01 14 52735356 52735356 C A PTGDR Missense_Mutation p.T275N 0.05 deleterious(0.02) benign(0.076) TCGA-UB-A7MF-01 15 100942754 100942754 T C CERS3 3'UTR 0.38 TCGA-UB-A7MF-01 15 35747015 35747015 C G DPH6 Missense_Mutation p.E107Q 0.04 tolerated(0.25) benign(0.063) TCGA-UB-A7MF-01 15 52194155 52194155 C G TMOD3 Missense_Mutation p.L316V 0.38 tolerated(0.21) benign(0.036) TCGA-UB-A7MF-01 15 52486054 52486054 C A MYO5C 3'UTR 0.14 TCGA-UB-A7MF-01 15 84241337 84241337 G C SH3GL3 Missense_Mutation p.G118R 0.31 deleterious(0) probably_damaging(0.997) TCGA-UB-A7MF-01 16 1260417 1260417 A G CACNA1H Missense_Mutation p.H1298R 0.43 deleterious(0.04) probably_damaging(0.989) TCGA-UB-A7MF-01 16 2257035 2257035 G C MLST8 Splice_Site p.X115_splice 0.23 TCGA-UB-A7MF-01 16 58036446 58036446 G A USB1 Silent p.P54P 0.37 TCGA-UB-A7MF-01 16 67006828 67006828 C A CES3 Missense_Mutation p.P531Q 0.44 deleterious(0) possibly_damaging(0.876) TCGA-UB-A7MF-01 16 67472440 67472440 A T ATP6V0D1 Silent p.P349P 0.26 TCGA-UB-A7MF-01 16 68026979 68026979 A T DPEP2 Missense_Mutation p.L46Q 0.35 tolerated_low_confidence(0.36) benign(0.298) TCGA-UB-A7MF-01 16 69726159 69726159 G - NFAT5 Frame_Shift_Del p.G811Efs*10 0.18 TCGA-UB-A7MF-01 16 70820268 70820268 C A VAC14 Missense_Mutation p.K35N 0.55 deleterious(0) possibly_damaging(0.632) TCGA-UB-A7MF-01 16 81922840 81922840 A T PLCG2 Missense_Mutation p.M277L 0.21 tolerated(0.72) possibly_damaging(0.902) TCGA-UB-A7MF-01 17 10307686 10307686 G T MYH8 Silent p.L883L 0.31 TCGA-UB-A7MF-01 17 17696772 17696772 C T RAI1 Silent p.S170S 0.16 TCGA-UB-A7MF-01 17 44110524 44110532 AGGGCGGCG GGCA KANSL1 Frame_Shift_Del p.L920Cfs*4 0.36 TCGA-UB-A7MF-01 17 46692089 46692089 G T HOXB8 5'UTR 0.28 TCGA-UB-A7MF-01 17 60493662 60493662 G A EFCAB3 Missense_Mutation p.R482Q 0.26 tolerated_low_confidence(0.05) benign(0.005) TCGA-UB-A7MF-01 17 7212998 7212998 C G EIF5A Nonsense_Mutation p.S45* 0.40 TCGA-UB-A7MF-01 17 7578205 7578205 C A TP53 Missense_Mutation p.S215I 0.46 deleterious(0) probably_damaging(1) TCGA-UB-A7MF-01 17 76696458 76696458 C T CYTH1 Missense_Mutation p.A169T 0.09 deleterious(0) probably_damaging(0.997) TCGA-UB-A7MF-01 17 80915065 80915065 C - B3GNTL1 Frame_Shift_Del p.D308Tfs*26 0.18 TCGA-UB-A7MF-01 18 11753928 11753928 A G GNAL Missense_Mutation p.D203G 0.45 deleterious(0.01) possibly_damaging(0.485) TCGA-UB-A7MF-01 18 56033299 56033299 A G NEDD4L Silent p.R634R 0.37 TCGA-UB-A7MF-01 18 5890394 5890394 G C TMEM200C Missense_Mutation p.Q557E 0.18 tolerated(0.28) benign(0) TCGA-UB-A7MF-01 19 17692114 17692114 G A COLGALT1 Nonsense_Mutation p.W577* 0.17 TCGA-UB-A7MF-01 19 22575687 22575687 C A ZNF98 Missense_Mutation p.R117L 0.35 tolerated(0.15) benign(0) TCGA-UB-A7MF-01 19 41119595 41119595 G T LTBP4 Intron 0.33 TCGA-UB-A7MF-01 19 46457193 46457193 G A NOVA2 Missense_Mutation p.R81W 0.30 deleterious(0) unknown(0) TCGA-UB-A7MF-01 19 49136708 49136708 T C DBP Missense_Mutation p.E252G 0.25 deleterious(0.03) benign(0.046) TCGA-UB-A7MF-01 19 52001422 52001422 T C SIGLEC12 Missense_Mutation p.T419A 0.50 tolerated(0.27) probably_damaging(0.944) TCGA-UB-A7MF-01 19 52091277 52091277 G A ZNF175 Missense_Mutation p.G565R 0.10 deleterious(0) probably_damaging(1) TCGA-UB-A7MF-01 19 53794575 53794575 G A BIRC8 5'UTR 0.23 TCGA-UB-A7MF-01 19 54577312 54577312 C T TARM1 Missense_Mutation p.S173N 0.05 tolerated(0.19) benign(0.188) TCGA-UB-A7MF-01 19 54695109 54695109 C G TSEN34 Intron 0.21 TCGA-UB-A7MF-01 19 855638 855638 C T ELANE Silent p.N147N 0.17 TCGA-UB-A7MF-01 19 8996440 8996440 G C MUC16 Missense_Mutation p.P13711R 0.13 probably_damaging(0.989) TCGA-UB-A7MF-01 1 150960818 150960818 G A ANXA9 Splice_Site p.X284_splice 0.37 TCGA-UB-A7MF-01 1 153654209 153654209 C T NPR1 Silent p.D355D 0.42 TCGA-UB-A7MF-01 1 169566297 169566297 A C SELP Missense_Mutation p.L608R 0.03 tolerated(0.05) probably_damaging(0.991) TCGA-UB-A7MF-01 1 175335172 175335172 G C TNR Missense_Mutation p.T719S 0.53 tolerated(0.16) benign(0.189) TCGA-UB-A7MF-01 1 177226365 177226365 G A BRINP2 Missense_Mutation p.E172K 0.28 deleterious(0.01) possibly_damaging(0.575) TCGA-UB-A7MF-01 1 206145524 206145525 - TC FAM72A Frame_Shift_Ins p.W102Sfs*15 0.16 TCGA-UB-A7MF-01 1 212190324 212190324 T C INTS7 Missense_Mutation p.N138S 0.34 tolerated(0.1) possibly_damaging(0.674) TCGA-UB-A7MF-01 1 231931028 231931028 G T DISC1 Nonsense_Mutation p.E559* 0.05 TCGA-UB-A7MF-01 1 248224001 248224001 A T OR2L3 Missense_Mutation p.Q6H 0.44 tolerated(0.19) benign(0.013) TCGA-UB-A7MF-01 1 44364940 44364940 G A ST3GAL3 Intron 0.11 TCGA-UB-A7MF-01 20 31672750 31672750 G T BPIFB4 Missense_Mutation p.G244C 0.29 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MF-01 20 39802162 39802162 A G PLCG1 Missense_Mutation p.T1128A 0.07 deleterious(0) possibly_damaging(0.728) TCGA-UB-A7MF-01 20 57768444 57768444 A G ZNF831 Silent p.R790R 0.42 TCGA-UB-A7MF-01 20 8862417 8862417 G T PLCB1 Missense_Mutation p.G1191V 0.23 deleterious_low_confidence(0.04) benign(0.109) TCGA-UB-A7MF-01 20 9520141 9520141 C A PAK7 Missense_Mutation p.V710F 0.49 deleterious(0) possibly_damaging(0.728) TCGA-UB-A7MF-01 21 44195410 44195410 C T PDE9A 3'UTR 0.44 TCGA-UB-A7MF-01 21 47542411 47542411 G A COL6A2 Missense_Mutation p.G525E 0.22 deleterious(0) probably_damaging(0.993) TCGA-UB-A7MF-01 22 16267072 16267072 G A POTEH Silent p.H459H 0.02 TCGA-UB-A7MF-01 22 16287459 16287459 A T POTEH Missense_Mutation p.F143I 0.18 deleterious_low_confidence(0.01) benign(0.064) TCGA-UB-A7MF-01 22 30733037 30733037 T A SF3A1 Missense_Mutation p.E695V 0.40 tolerated(0.05) benign(0.417) TCGA-UB-A7MF-01 22 39421641 39421641 T C APOBEC3D Silent p.Y190Y 0.38 TCGA-UB-A7MF-01 22 41257117 41257117 T G DNAJB7 Missense_Mutation p.K294N 0.39 deleterious(0.04) possibly_damaging(0.908) TCGA-UB-A7MF-01 2 175436394 175436394 C A WIPF1 Intron 0.14 TCGA-UB-A7MF-01 2 180853328 180853332 TGATA - CWC22 Frame_Shift_Del p.Y23Efs*10 0.08 TCGA-UB-A7MF-01 2 191841668 191841668 C G STAT1 Missense_Mutation p.V653L 0.55 tolerated(0.27) benign(0.037) TCGA-UB-A7MF-01 2 1926072 1926072 G T MYT1L Missense_Mutation p.P490Q 0.20 tolerated(0.1) possibly_damaging(0.726) TCGA-UB-A7MF-01 2 219225307 219225307 C T C2orf62 Silent p.L129L 0.26 TCGA-UB-A7MF-01 2 240946749 240946749 G T NDUFA10 Missense_Mutation p.A263D 0.11 tolerated(0.06) possibly_damaging(0.845) TCGA-UB-A7MF-01 2 74741909 74741909 C T TLX2 5'UTR 0.36 TCGA-UB-A7MF-01 3 152554423 152554423 G C P2RY1 Missense_Mutation p.L284F 0.48 deleterious(0.01) possibly_damaging(0.824) TCGA-UB-A7MF-01 3 21462743 21462743 C T ZNF385D Missense_Mutation p.R384Q 0.20 deleterious(0) possibly_damaging(0.885) TCGA-UB-A7MF-01 3 42672063 42672063 G C NKTR Missense_Mutation p.D134H 0.15 deleterious_low_confidence(0) unknown(0) TCGA-UB-A7MF-01 3 49720485 49720485 C T APEH Silent p.L667L 0.44 TCGA-UB-A7MF-01 4 119951206 119951206 G C SYNPO2 Missense_Mutation p.E426Q 0.74 deleterious(0.05) possibly_damaging(0.812) TCGA-UB-A7MF-01 4 141489132 141489132 C T UCP1 Splice_Site p.X43_splice 0.74 TCGA-UB-A7MF-01 4 15656911 15656911 C G FBXL5 5'UTR 0.21 TCGA-UB-A7MF-01 4 162306811 162306811 A T FSTL5 3'UTR 0.66 TCGA-UB-A7MF-01 4 3768933 3768933 G A ADRA2C Silent p.P200P 0.19 TCGA-UB-A7MF-01 4 70351040 70351040 T G UGT2B4 Missense_Mutation p.Q399P 0.17 deleterious(0) probably_damaging(0.996) TCGA-UB-A7MF-01 4 70359471 70359471 G C UGT2B4 Silent p.L270L 0.54 TCGA-UB-A7MF-01 5 110409224 110409224 G T TSLP Nonsense_Mutation p.E78* 0.17 TCGA-UB-A7MF-01 5 127680141 127680141 G T FBN2 Silent p.I1093I 0.23 TCGA-UB-A7MF-01 5 13788992 13788992 T C DNAH5 Missense_Mutation p.K2827R 0.62 benign(0.292) TCGA-UB-A7MF-01 5 57791970 57791970 A G GAPT 3'UTR 0.33 TCGA-UB-A7MF-01 5 60831392 60831392 C G ZSWIM6 Missense_Mutation p.S776C 0.40 deleterious(0) possibly_damaging(0.879) TCGA-UB-A7MF-01 6 102134211 102134211 C A GRIK2 Missense_Mutation p.L312M 0.12 tolerated(0.1) possibly_damaging(0.905) TCGA-UB-A7MF-01 6 110107511 110107511 G C FIG4 Missense_Mutation p.C652S 0.10 tolerated(1) benign(0.002) TCGA-UB-A7MF-01 6 149826488 149826488 A T PPIL4 3'UTR 0.09 TCGA-UB-A7MF-01 6 157522371 157522371 A G ARID1B Missense_Mutation p.N1548S 0.40 probably_damaging(0.99) TCGA-UB-A7MF-01 6 160210550 160210550 G C TCP1 5'UTR 0.10 TCGA-UB-A7MF-01 6 168366667 168366667 C T MLLT4 3'Flank 0.53 TCGA-UB-A7MF-01 6 24667469 24667469 C G ACOT13 5'UTR 0.36 TCGA-UB-A7MF-01 6 3106166 3106166 C T RIPK1 Missense_Mutation p.P486L 0.43 tolerated(0.11) benign(0.197) TCGA-UB-A7MF-01 6 64004842 64004842 C T LGSN Missense_Mutation p.E47K 0.38 tolerated_low_confidence(0.32) benign(0.257) TCGA-UB-A7MF-01 6 76527267 76527267 G A MYO6 Translation_Start_Site p.M1? 0.47 deleterious(0.01) benign(0.003) TCGA-UB-A7MF-01 6 97246394 97246394 C T GPR63 Missense_Mutation p.R405H 0.43 deleterious(0.01) benign(0.177) TCGA-UB-A7MF-01 7 138394421 138394421 G C ATP6V0A4 Missense_Mutation p.L793V 0.47 deleterious(0) probably_damaging(0.999) TCGA-UB-A7MF-01 7 142723964 142723964 A G OR9A2 Missense_Mutation p.F86L 0.23 tolerated(0.74) benign(0) TCGA-UB-A7MF-01 7 149416623 149416623 G T KRBA1 Splice_Site 0.17 TCGA-UB-A7MF-01 7 4245592 4245592 C T SDK1 Missense_Mutation p.P1727L 0.34 tolerated(0.35) benign(0.004) TCGA-UB-A7MF-01 7 6098639 6098639 C T EIF2AK1 Missense_Mutation p.A26T 0.08 deleterious(0.01) benign(0.029) TCGA-UB-A7MF-01 7 90045099 90045099 G T CLDN12 3'UTR 0.30 TCGA-UB-A7MF-01 7 99769820 99769820 C T GPC2 Missense_Mutation p.D305N 0.09 deleterious(0.02) benign(0.428) TCGA-UB-A7MF-01 8 21827677 21827677 T C XPO7 Silent p.L94L 0.24 TCGA-UB-A7MF-01 8 27764734 27764734 A T SCARA5 Missense_Mutation p.L343M 0.30 tolerated(0.21) benign(0.101) TCGA-UB-A7MF-01 8 36675256 36675256 A G KCNU1 Missense_Mutation p.T362A 0.41 deleterious(0.02) benign(0.437) TCGA-UB-A7MF-01 8 41504161 41504161 G A NKX6-3 Missense_Mutation p.P72L 0.25 tolerated_low_confidence(0.33) probably_damaging(0.958) TCGA-UB-A7MF-01 8 59060659 59060659 C T FAM110B 3'UTR 0.21 TCGA-UB-A7MF-01 8 75929298 75929298 G T CRISPLD1 Missense_Mutation p.G316C 0.14 deleterious(0) probably_damaging(1) TCGA-UB-A7MF-01 8 93023242 93023242 G T RUNX1T1 Silent p.I193I 0.44 TCGA-UB-A7MF-01 9 139617859 139617859 A G FAM69B Missense_Mutation p.D310G 0.26 deleterious(0.02) benign(0.4) TCGA-UB-A7MF-01 9 32550784 32550784 C T TOPORS Silent p.P62P 0.38 TCGA-UB-A7MF-01 X 106173306 106173307 - C CLDN2 3'UTR 0.19 TCGA-UB-A7MF-01 X 14915353 14915353 A G MOSPD2 Missense_Mutation p.N157S 0.89 tolerated(1) benign(0.002) TCGA-UB-A7MF-01 X 35821626 35821626 T A MAGEB16 3'UTR 0.76 TCGA-UB-A7MF-01 X 48054255 48054255 T A SSX5 Missense_Mutation p.K76N 0.74 tolerated(0.07) possibly_damaging(0.705) TCGA-UB-AA0U-01 10 11505654 11505655 - CGT USP6NL In_Frame_Ins p.T441dup 0.23 TCGA-UB-AA0U-01 10 115977409 115977419 TTGCAGGTAAG - TDRD1 Splice_Site p.X775_splice 0.12 TCGA-UB-AA0U-01 10 17686221 17686221 C A STAM 5'UTR 0.40 TCGA-UB-AA0U-01 10 24508698 24508698 C G KIAA1217 Missense_Mutation p.P72A 0.25 tolerated(1) benign(0.004) TCGA-UB-AA0U-01 10 28224053 28224053 C A ARMC4 Missense_Mutation p.R794L 0.28 deleterious(0) probably_damaging(0.998) TCGA-UB-AA0U-01 10 49654442 49654442 G A ARHGAP22 Missense_Mutation p.P713S 0.31 tolerated_low_confidence(0.07) benign(0.021) TCGA-UB-AA0U-01 10 54528080 54528115 ATCAGTGATGCCCAGGAAGGCTTCCTCCTTGATGAG - MBL2 In_Frame_Del p.L177_D188del 0.27 TCGA-UB-AA0U-01 10 97074612 97074612 T C SORBS1 3'UTR 0.48 TCGA-UB-AA0U-01 11 102743680 102743680 C T MMP12 RNA 0.16 TCGA-UB-AA0U-01 11 105795410 105795410 C T GRIA4 Nonsense_Mutation p.Q588* 0.17 TCGA-UB-AA0U-01 11 111706981 111706981 A T ALG9 Silent p.G332G 0.33 TCGA-UB-AA0U-01 11 1651253 1651253 C G KRTAP5-5 Silent p.G61G 0.14 TCGA-UB-AA0U-01 11 280376 280376 G A NLRP6 Silent p.K214K 0.32 TCGA-UB-AA0U-01 11 4127292 4127292 A G RRM1 Missense_Mutation p.K42R 0.19 tolerated_low_confidence(0.23) benign(0.035) TCGA-UB-AA0U-01 11 46407264 46407264 G A CHRM4 Missense_Mutation p.P282S 0.39 tolerated(0.75) benign(0.007) TCGA-UB-AA0U-01 11 61533636 61533637 - C MYRF Frame_Shift_Ins p.T118Hfs*8 0.11 TCGA-UB-AA0U-01 11 65787820 65787820 G A CATSPER1 Silent p.L678L 0.22 TCGA-UB-AA0U-01 11 71640151 71640151 G A RNF121 Missense_Mutation p.G15E 0.13 tolerated(0.25) unknown(0) TCGA-UB-AA0U-01 11 74168309 74168320 CACACGGTTCTT - KCNE3 In_Frame_Del p.K97_V100del 0.11 TCGA-UB-AA0U-01 11 77780754 77780755 TT - NDUFC2 3'UTR 0.35 TCGA-UB-AA0U-01 12 112673514 112673514 C T HECTD4 Missense_Mutation p.R1694H 0.13 probably_damaging(0.977) TCGA-UB-AA0U-01 12 46246680 46246680 G T ARID2 Splice_Site p.X1591_splice 0.49 TCGA-UB-AA0U-01 12 49498238 49498238 G A LMBR1L Missense_Mutation p.S143F 0.18 tolerated(0.35) probably_damaging(0.999) TCGA-UB-AA0U-01 12 66786486 66786486 A G GRIP1 Missense_Mutation p.V695A 0.37 tolerated(0.07) possibly_damaging(0.714) TCGA-UB-AA0U-01 12 6972521 6972521 C T USP5 Missense_Mutation p.P645L 0.49 tolerated(0.1) possibly_damaging(0.852) TCGA-UB-AA0U-01 12 71977548 71977548 T G LGR5 Silent p.P586P 0.33 TCGA-UB-AA0U-01 13 113741578 113741578 G A MCF2L Silent p.L801L 0.11 TCGA-UB-AA0U-01 13 39587872 39587872 T C PROSER1 Missense_Mutation p.Q506R 0.25 tolerated_low_confidence(0.2) benign(0.002) TCGA-UB-AA0U-01 13 95112447 95112447 C T DCT Silent p.G359G 0.14 TCGA-UB-AA0U-01 14 102881064 102881064 A G TECPR2 Missense_Mutation p.Q191R 0.32 tolerated(0.05) benign(0.13) TCGA-UB-AA0U-01 15 43473452 43473452 A G TMEM62 Silent p.G520G 0.13 TCGA-UB-AA0U-01 15 56736725 56736725 T C MNS1 Silent p.K201K 0.13 TCGA-UB-AA0U-01 15 65799617 65799617 T C DPP8 Silent p.L128L 0.13 TCGA-UB-AA0U-01 16 12662438 12662438 T C SNX29 Silent p.G798G 0.05 TCGA-UB-AA0U-01 16 31226434 31226434 C T TRIM72 Silent p.A125A 0.30 TCGA-UB-AA0U-01 16 53499478 53499479 - A RBL2 Frame_Shift_Ins p.R610Kfs*4 0.32 TCGA-UB-AA0U-01 16 85690011 85690011 G A GSE1 Missense_Mutation p.R351H 0.18 deleterious(0.02) unknown(0) TCGA-UB-AA0U-01 16 89986453 89986461 CTCATCGTC - MC1R In_Frame_Del p.I264_L266del 0.30 TCGA-UB-AA0U-01 17 1543920 1543920 T C SCARF1 Missense_Mutation p.T278A 0.43 tolerated(0.2) possibly_damaging(0.665) TCGA-UB-AA0U-01 17 39340971 39340971 G T KRTAP4-1 Missense_Mutation p.R46S 0.30 deleterious(0) possibly_damaging(0.493) TCGA-UB-AA0U-01 17 40030078 40030078 G A ACLY Silent p.L876L 0.16 TCGA-UB-AA0U-01 17 57247167 57247167 A G PRR11 Silent p.L18L 0.30 TCGA-UB-AA0U-01 17 58506757 58506757 C A C17orf64 Missense_Mutation p.S155Y 0.30 deleterious(0.05) possibly_damaging(0.695) TCGA-UB-AA0U-01 17 78092487 78092487 T C GAA Silent p.S894S 0.19 TCGA-UB-AA0U-01 18 10485680 10485680 G A APCDD1 Silent p.P332P 0.12 TCGA-UB-AA0U-01 18 40850226 40850226 G A SYT4 3'UTR 0.38 TCGA-UB-AA0U-01 18 71791775 71791775 T C FBXO15 Missense_Mutation p.N315S 0.39 tolerated(0.58) benign(0.245) TCGA-UB-AA0U-01 19 10129559 10129559 G A RDH8 Missense_Mutation p.V159M 0.38 deleterious(0.01) probably_damaging(0.944) TCGA-UB-AA0U-01 19 10940881 10940882 - C DNM2 Frame_Shift_Ins p.L793Pfs*31 0.32 TCGA-UB-AA0U-01 19 11138584 11138584 G A SMARCA4 Missense_Mutation p.D1114N 0.17 probably_damaging(1) TCGA-UB-AA0U-01 19 53086658 53086658 G A ZNF701 Missense_Mutation p.R515Q 0.11 tolerated(1) benign(0.002) TCGA-UB-AA0U-01 19 53086659 53086659 A C ZNF701 Silent p.R515R 0.11 TCGA-UB-AA0U-01 1 12854312 12854312 A G PRAMEF1 Missense_Mutation p.H179R 0.07 tolerated(0.06) probably_damaging(0.996) TCGA-UB-AA0U-01 1 158225111 158225111 G A CD1A Missense_Mutation p.R99H 0.26 tolerated(0.41) benign(0) TCGA-UB-AA0U-01 1 183933348 183933348 T C COLGALT2 Intron 0.27 TCGA-UB-AA0U-01 1 228289844 228289844 C T C1orf35 Missense_Mutation p.G157E 0.20 tolerated(0.97) benign(0.118) TCGA-UB-AA0U-01 1 247607349 247607349 G A NLRP3 Silent p.T915T 0.21 TCGA-UB-AA0U-01 1 247902094 247902094 T C OR14K1 Missense_Mutation p.F60L 0.38 deleterious(0.02) possibly_damaging(0.463) TCGA-UB-AA0U-01 20 43934157 43934157 C G MATN4 Missense_Mutation p.Q22H 0.33 probably_damaging(0.977) TCGA-UB-AA0U-01 21 27840794 27840794 G C CYYR1 3'UTR 0.29 TCGA-UB-AA0U-01 21 41725589 41725589 C A DSCAM Missense_Mutation p.C246F 0.16 deleterious(0) probably_damaging(1) TCGA-UB-AA0U-01 22 23438485 23438485 C T GNAZ Silent p.D201D 0.38 TCGA-UB-AA0U-01 22 30683518 30683518 A C GATSL3 Silent p.A72A 0.41 TCGA-UB-AA0U-01 2 102808479 102808479 G A IL1RL2 Missense_Mutation p.D130N 0.19 tolerated(0.4) benign(0.022) TCGA-UB-AA0U-01 2 128084382 128084382 T C MAP3K2 Missense_Mutation p.R160G 0.29 tolerated(0.3) benign(0.075) TCGA-UB-AA0U-01 2 136026637 136026637 T C ZRANB3 Silent p.A427A 0.47 TCGA-UB-AA0U-01 2 138169226 138169226 C G THSD7B Missense_Mutation p.L915V 0.05 deleterious(0.04) possibly_damaging(0.567) TCGA-UB-AA0U-01 2 1442606 1442606 C T TPO Intron 0.40 TCGA-UB-AA0U-01 2 1926738 1926738 A G MYT1L Missense_Mutation p.L268S 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-UB-AA0U-01 2 203765765 203765765 T C WDR12 Missense_Mutation p.M72V 0.19 tolerated(0.3) benign(0) TCGA-UB-AA0U-01 2 208461906 208461906 A C CREB1 3'UTR 0.38 TCGA-UB-AA0U-01 2 209104688 209104688 C G IDH1 Missense_Mutation p.C297S 0.34 tolerated_low_confidence(0.21) benign(0.05) TCGA-UB-AA0U-01 2 212251640 212251640 C A ERBB4 Missense_Mutation p.S1140I 0.19 deleterious(0.03) benign(0.028) TCGA-UB-AA0U-01 2 216977745 216977745 G A XRCC5 Missense_Mutation p.V10I 0.22 tolerated(0.86) benign(0.003) TCGA-UB-AA0U-01 2 217559447 217559447 C T IGFBP5 Missense_Mutation p.A18T 0.33 tolerated(0.53) unknown(0) TCGA-UB-AA0U-01 2 220502908 220502908 T A SLC4A3 Missense_Mutation p.F957Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-UB-AA0U-01 2 241570327 241570327 G T GPR35 3'UTR 0.42 TCGA-UB-AA0U-01 2 25966699 25966699 G A ASXL2 Missense_Mutation p.T836I 0.42 deleterious_low_confidence(0.04) benign(0.187) TCGA-UB-AA0U-01 2 28635208 28635208 T C FOSL2 Missense_Mutation p.S292P 0.29 tolerated(0.07) benign(0.004) TCGA-UB-AA0U-01 2 89513381 89513381 A T IGKV1-27 Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-UB-AA0U-01 3 123166784 123166784 C T ADCY5 Silent p.L203L 0.31 TCGA-UB-AA0U-01 3 140406640 140406640 G A TRIM42 Silent p.K372K 0.34 TCGA-UB-AA0U-01 3 168840444 168840444 T A MECOM Missense_Mutation p.N177I 0.34 deleterious(0) probably_damaging(0.999) TCGA-UB-AA0U-01 4 138451749 138451749 C T PCDH18 Silent p.G498G 0.33 TCGA-UB-AA0U-01 4 165890830 165890830 G A TRIM61 Nonsense_Mutation p.Q109* 0.19 TCGA-UB-AA0U-01 4 55595596 55595596 G T KIT Missense_Mutation p.D696Y 0.23 deleterious(0.01) probably_damaging(0.987) TCGA-UB-AA0U-01 4 76489344 76489344 C A C4orf26 Silent p.R44R 0.15 TCGA-UB-AA0U-01 4 83827764 83827764 A T THAP9 Silent p.L188L 0.22 TCGA-UB-AA0U-01 5 137475827 137475827 T C BRD8 Missense_Mutation p.K1215R 0.13 tolerated_low_confidence(0.61) benign(0) TCGA-UB-AA0U-01 5 176016108 176016108 G T CDHR2 Missense_Mutation p.G978V 0.43 deleterious(0) probably_damaging(0.978) TCGA-UB-AA0U-01 5 39383019 39383019 C A DAB2 Missense_Mutation p.D348Y 0.23 deleterious(0) probably_damaging(0.996) TCGA-UB-AA0U-01 5 86629119 86629119 A G RASA1 Silent p.L288L 0.32 TCGA-UB-AA0U-01 6 111694493 111694493 G T REV3L Missense_Mutation p.Q1689K 0.49 deleterious(0.02) possibly_damaging(0.48) TCGA-UB-AA0U-01 6 170592454 170592454 G A DLL1 Missense_Mutation p.A638V 0.53 tolerated(0.28) benign(0.029) TCGA-UB-AA0U-01 6 28483513 28483513 T C GPX6 Missense_Mutation p.Q3R 0.08 tolerated_low_confidence(0.71) benign(0) TCGA-UB-AA0U-01 6 29323776 29323776 A C OR5V1 Missense_Mutation p.L66W 0.22 deleterious(0) probably_damaging(1) TCGA-UB-AA0U-01 6 36853773 36853773 C T C6orf89 5'UTR 0.21 TCGA-UB-AA0U-01 6 42204142 42204142 T A TRERF1 Missense_Mutation p.E956V 0.27 tolerated(0.08) benign(0.403) TCGA-UB-AA0U-01 6 44255594 44255594 C G TCTE1 5'UTR 0.47 TCGA-UB-AA0U-01 6 7609147 7609147 A G SNRNP48 3'UTR 0.21 TCGA-UB-AA0U-01 6 90390402 90390402 C T MDN1 Silent p.L4057L 0.40 TCGA-UB-AA0U-01 7 100239194 100239194 T C TFR2 5'UTR 0.28 TCGA-UB-AA0U-01 7 123599859 123599859 G A SPAM1 Missense_Mutation p.D456N 0.22 tolerated(1) benign(0.001) TCGA-UB-AA0U-01 7 128478085 128478085 C A FLNC Silent p.V338V 0.26 TCGA-UB-AA0U-01 7 31692559 31692559 T A CCDC129 Intron 0.50 TCGA-UB-AA0U-01 8 124358981 124358981 C G ATAD2 Missense_Mutation p.C741S 0.22 tolerated(0.75) benign(0.001) TCGA-UB-AA0U-01 8 139890313 139890313 C A COL22A1 Missense_Mutation p.G113V 0.23 unknown(0) TCGA-UB-AA0U-01 8 139890314 139890314 C A COL22A1 Missense_Mutation p.G113C 0.22 unknown(0) TCGA-UB-AA0U-01 8 145140996 145140996 C A GPAA1 Missense_Mutation p.L612M 0.15 deleterious(0.01) probably_damaging(0.995) TCGA-UB-AA0U-01 8 56982283 56982285 GGA - RPS20 3'UTR 0.12 TCGA-UB-AA0U-01 8 97978226 97978226 G T CPQ Missense_Mutation p.G305C 0.05 deleterious(0) probably_damaging(0.956) TCGA-UB-AA0U-01 8 99264768 99264768 C T NIPAL2 Missense_Mutation p.G100E 0.16 deleterious(0) probably_damaging(1) TCGA-UB-AA0U-01 9 117552930 117552930 G C TNFSF15 Missense_Mutation p.D186E 0.26 tolerated(0.18) benign(0.013) TCGA-UB-AA0U-01 9 131353846 131353846 G T SPTAN1 Nonsense_Mutation p.E1033* 0.14 TCGA-UB-AA0U-01 9 38396813 38396813 C T ALDH1B1 Silent p.T356T 0.18 TCGA-UB-AA0U-01 9 6329443 6329443 G C TPD52L3 3'UTR 0.20 TCGA-UB-AA0U-01 X 140969562 140969562 G T MAGEC3 Nonsense_Mutation p.E297* 0.45 TCGA-UB-AA0V-01 10 105037362 105037362 C A INA Missense_Mutation p.R132S 0.39 deleterious(0) probably_damaging(0.981) TCGA-UB-AA0V-01 10 69281647 69281647 C T CTNNA3 Missense_Mutation p.G178R 0.16 tolerated(0.5) probably_damaging(0.988) TCGA-UB-AA0V-01 10 93258688 93258688 A T HECTD2 Missense_Mutation p.K605N 0.04 tolerated(0.57) benign(0.102) TCGA-UB-AA0V-01 11 1104063 1104063 G A MUC2 Missense_Mutation p.A2752T 0.23 unknown(0) TCGA-UB-AA0V-01 12 91348627 91348627 C T CCER1 5'UTR 0.08 TCGA-UB-AA0V-01 12 91502234 91502234 C A LUM Missense_Mutation p.A175S 0.07 tolerated_low_confidence(0.62) benign(0.02) TCGA-UB-AA0V-01 13 103384823 103384823 C T CCDC168 Missense_Mutation p.R1446H 0.20 tolerated(0.2) unknown(0) TCGA-UB-AA0V-01 13 106142224 106142224 C T DAOA Intron 0.17 TCGA-UB-AA0V-01 14 103406645 103406645 G A CDC42BPB Silent p.H1475H 0.15 TCGA-UB-AA0V-01 15 24923717 24923717 T C NPAP1 Silent p.L901L 0.17 TCGA-UB-AA0V-01 15 43507436 43507436 T A EPB42 Missense_Mutation p.E126V 0.05 deleterious(0) possibly_damaging(0.887) TCGA-UB-AA0V-01 15 59517010 59517010 C T MYO1E Missense_Mutation p.A219T 0.08 deleterious(0.04) possibly_damaging(0.841) TCGA-UB-AA0V-01 16 14016042 14016042 A G ERCC4 Missense_Mutation p.D121G 0.14 deleterious(0.04) benign(0.03) TCGA-UB-AA0V-01 16 2221291 2221291 C G TRAF7 Silent p.P125P 0.18 TCGA-UB-AA0V-01 16 67709619 67709619 C G GFOD2 Silent p.G199G 0.07 TCGA-UB-AA0V-01 16 68267903 68267903 G A ESRP2 Silent p.S145S 0.06 TCGA-UB-AA0V-01 17 36935649 36935649 T G PIP4K2B Missense_Mutation p.K214T 0.18 deleterious(0.02) possibly_damaging(0.58) TCGA-UB-AA0V-01 17 40269500 40269500 G A KAT2A Missense_Mutation p.R515W 0.06 deleterious(0) possibly_damaging(0.667) TCGA-UB-AA0V-01 17 7477593 7477593 C G EIF4A1 Silent p.G13G 0.15 TCGA-UB-AA0V-01 18 72776606 72776606 A G ZNF407 3'UTR 0.36 TCGA-UB-AA0V-01 19 12164054 12164054 G A ZNF878 5'Flank 0.16 TCGA-UB-AA0V-01 19 12500983 12500983 C T ZNF799 3'UTR 0.24 TCGA-UB-AA0V-01 19 14863326 14863326 C T EMR2 Missense_Mutation p.V535M 0.06 tolerated(0.17) benign(0.393) TCGA-UB-AA0V-01 19 18965500 18965500 A G UPF1 Missense_Mutation p.K416R 0.10 tolerated(0.05) benign(0.145) TCGA-UB-AA0V-01 19 47197252 47197252 G A PRKD2 Missense_Mutation p.P486S 0.12 tolerated(0.61) benign(0.095) TCGA-UB-AA0V-01 19 5047661 5047661 T G KDM4B Missense_Mutation p.F203V 0.08 possibly_damaging(0.577) TCGA-UB-AA0V-01 19 53209500 53209500 G A ZNF611 Missense_Mutation p.H270Y 0.13 tolerated(0.07) benign(0.004) TCGA-UB-AA0V-01 19 5719823 5719823 C T LONP1 Silent p.P107P 0.12 TCGA-UB-AA0V-01 1 110020616 110020616 G T SYPL2 Silent p.L211L 0.15 TCGA-UB-AA0V-01 1 113010143 113010143 A G WNT2B 5'UTR 0.04 TCGA-UB-AA0V-01 1 212981088 212981088 G T TATDN3 Missense_Mutation p.K166N 0.11 tolerated(0.16) benign(0.009) TCGA-UB-AA0V-01 22 32909762 32909762 G A SYN3 Missense_Mutation p.R554C 0.10 deleterious(0) probably_damaging(0.994) TCGA-UB-AA0V-01 2 112615903 112615903 T A ANAPC1 Silent p.V446V 0.05 TCGA-UB-AA0V-01 2 203693673 203693673 T C ICA1L Silent p.Q20Q 0.06 TCGA-UB-AA0V-01 2 233470783 233470784 - G AC073254.1 Intron 0.13 TCGA-UB-AA0V-01 2 241903075 241903075 G T AC104809.3 Nonsense_Mutation p.E958* 0.18 TCGA-UB-AA0V-01 2 241903076 241903076 A T AC104809.3 Missense_Mutation p.E958V 0.18 deleterious(0) probably_damaging(0.999) TCGA-UB-AA0V-01 2 54135494 54135494 T G PSME4 Missense_Mutation p.K916T 0.15 deleterious(0) benign(0.418) TCGA-UB-AA0V-01 3 100042712 100042712 T G TBC1D23 3'UTR 0.12 TCGA-UB-AA0V-01 3 184103890 184103890 C T CHRD Silent p.G625G 0.04 TCGA-UB-AA0V-01 3 53835443 53835443 G T CACNA1D Missense_Mutation p.S1820I 0.17 tolerated_low_confidence(0.09) benign(0.062) TCGA-UB-AA0V-01 4 159566234 159566234 G T RXFP1 Missense_Mutation p.R430L 0.16 deleterious(0) probably_damaging(0.998) TCGA-UB-AA0V-01 4 174312527 174312527 A T SCRG1 Silent p.T13T 0.08 TCGA-UB-AA0V-01 5 161580308 161580308 G T GABRG2 Silent p.R494R 0.05 TCGA-UB-AA0V-01 5 16794770 16794770 T C MYO10 Missense_Mutation p.Q151R 0.18 deleterious(0) probably_damaging(0.988) TCGA-UB-AA0V-01 5 177652372 177652372 C T PHYKPL Missense_Mutation p.V133M 0.17 tolerated(0.35) possibly_damaging(0.812) TCGA-UB-AA0V-01 5 43486895 43486895 G T C5orf34 3'UTR 0.07 TCGA-UB-AA0V-01 5 85586730 85586730 G A NBPF22P RNA 0.17 TCGA-UB-AA0V-01 6 137191048 137191048 G T PEX7 Silent p.A218A 0.19 TCGA-UB-AA0V-01 6 155618121 155618121 T C TFB1M Missense_Mutation p.Q171R 0.12 tolerated(1) benign(0.02) TCGA-UB-AA0V-01 6 30166750 30166750 C T TRIM26 Missense_Mutation p.R44H 0.16 tolerated(0.21) benign(0.041) TCGA-UB-AA0V-01 6 35477660 35477660 C T TULP1 Missense_Mutation p.R182K 0.12 tolerated_low_confidence(1) benign(0) TCGA-UB-AA0V-01 6 42931160 42931160 C A GNMT Missense_Mutation p.A230D 0.14 tolerated(0.63) benign(0) TCGA-UB-AA0V-01 6 53517065 53517065 G A KLHL31 Silent p.F412F 0.11 TCGA-UB-AA0V-01 7 76132782 76132782 G T DTX2 Nonsense_Mutation p.G477* 0.10 TCGA-UB-AA0V-01 8 146106995 146106995 T C ZNF250 Missense_Mutation p.T530A 0.05 deleterious(0.01) benign(0.014) TCGA-UB-AA0V-01 9 116122865 116122865 C T BSPRY Missense_Mutation p.R127W 0.10 deleterious(0) probably_damaging(0.998) TCGA-UB-AA0V-01 9 117267150 117267150 C T DFNB31 5'UTR 0.22 TCGA-UB-AA0V-01 9 80880791 80880791 A G CEP78 Missense_Mutation p.Q606R 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.888) TCGA-UB-AA0V-01 X 100496711 100496711 C G DRP2 Missense_Mutation p.A205G 0.19 deleterious(0) possibly_damaging(0.737) TCGA-UB-AA0V-01 X 150889930 150889930 G T FATE1 Nonsense_Mutation p.E100* 0.17 TCGA-UB-AA0V-01 X 151817747 151817747 G A GABRQ Silent p.L187L 0.16 TCGA-UB-AA0V-01 X 18627641 18627641 A G CDKL5 Silent p.R701R 0.05 TCGA-UB-AA0V-01 X 3235500 3235500 C A MXRA5 Silent p.A2074A 0.08 TCGA-UB-AA0V-01 X 65822603 65822603 G T EDA2R Missense_Mutation p.P130H 0.16 tolerated(0.14) benign(0.081) TCGA-WJ-A86L-01 10 102827879 102827879 G - KAZALD1 3'Flank 0.28 TCGA-WJ-A86L-01 10 127408315 127408315 G A EDRF1 5'UTR 0.40 TCGA-WJ-A86L-01 10 133930963 133930963 C T JAKMIP3 Missense_Mutation p.T173M 0.52 deleterious(0) possibly_damaging(0.851) TCGA-WJ-A86L-01 10 47747097 47747097 C A ANXA8L2 5'UTR 0.43 TCGA-WJ-A86L-01 10 73767585 73767585 C G CHST3 Missense_Mutation p.R266G 0.66 tolerated(0.28) benign(0.281) TCGA-WJ-A86L-01 10 8106075 8106075 C A GATA3 Missense_Mutation p.P300T 0.42 deleterious(0) possibly_damaging(0.834) TCGA-WJ-A86L-01 10 88417835 88417835 G A OPN4 Missense_Mutation p.A124T 0.46 deleterious(0) probably_damaging(0.993) TCGA-WJ-A86L-01 11 103780421 103780421 C A PDGFD 3'UTR 0.52 TCGA-WJ-A86L-01 11 124310418 124310418 A G OR8B8 Silent p.A188A 0.47 TCGA-WJ-A86L-01 11 15243031 15243031 C T INSC Silent p.G323G 0.40 TCGA-WJ-A86L-01 11 3428843 3428843 T C TSSC2 RNA 0.28 TCGA-WJ-A86L-01 11 47755616 47755616 T C FNBP4 Silent p.Q549Q 0.34 TCGA-WJ-A86L-01 11 5809377 5809377 G A OR52N1 Missense_Mutation p.L224F 0.54 deleterious(0.02) benign(0.208) TCGA-WJ-A86L-01 11 60541328 60541328 C A MS4A15 Missense_Mutation p.L173M 0.44 tolerated(0.22) probably_damaging(0.999) TCGA-WJ-A86L-01 11 60785356 60785356 G T CD6 Nonsense_Mutation p.E570* 0.50 TCGA-WJ-A86L-01 11 61295627 61295627 G A SYT7 Missense_Mutation p.H203Y 0.38 deleterious(0) possibly_damaging(0.526) TCGA-WJ-A86L-01 11 93839186 93839186 C G HEPHL1 Missense_Mutation p.H979D 0.38 tolerated(0.37) benign(0.07) TCGA-WJ-A86L-01 12 121437070 121437070 G A HNF1A Splice_Site p.X501_splice 0.42 TCGA-WJ-A86L-01 12 20903660 20903660 T C SLCO1C1 Missense_Mutation p.L617P 0.49 deleterious(0) probably_damaging(0.999) TCGA-WJ-A86L-01 12 22697019 22697019 A C C2CD5 Missense_Mutation p.S22R 0.45 deleterious(0) possibly_damaging(0.559) TCGA-WJ-A86L-01 12 40963607 40963607 G C MUC19 Splice_Site 0.31 TCGA-WJ-A86L-01 12 52757162 52757162 G A KRT85 Silent p.D273D 0.53 TCGA-WJ-A86L-01 12 52884732 52884732 C T KRT6A Silent p.V274V 0.39 TCGA-WJ-A86L-01 12 53238491 53238491 T G KRT78 Missense_Mutation p.Q258P 0.54 deleterious(0) probably_damaging(0.915) TCGA-WJ-A86L-01 12 7125602 7125602 G C LPCAT3 Missense_Mutation p.R43G 0.37 deleterious(0) possibly_damaging(0.7) TCGA-WJ-A86L-01 12 99121087 99121087 A G APAF1 Missense_Mutation p.Y1198C 0.47 tolerated(0.05) possibly_damaging(0.848) TCGA-WJ-A86L-01 13 38320590 38320590 C T TRPC4 Silent p.V127V 0.69 TCGA-WJ-A86L-01 13 76055872 76055872 G C TBC1D4 Missense_Mutation p.P11R 0.83 tolerated_low_confidence(0.28) probably_damaging(0.999) TCGA-WJ-A86L-01 13 95055461 95055461 T A GPC6 Missense_Mutation p.L553Q 0.91 tolerated_low_confidence(0.56) benign(0.002) TCGA-WJ-A86L-01 14 102552710 102552710 A T HSP90AA1 Silent p.P124P 0.30 TCGA-WJ-A86L-01 14 102689293 102689293 C T WDR20 3'UTR 0.49 TCGA-WJ-A86L-01 14 103807517 103807517 C A EIF5 3'UTR 0.25 TCGA-WJ-A86L-01 14 105180840 105180840 T A INF2 Missense_Mutation p.L1114H 0.42 deleterious_low_confidence(0) unknown(0) TCGA-WJ-A86L-01 14 21555482 21555482 C T ARHGEF40 Missense_Mutation p.A1416V 0.36 deleterious(0) possibly_damaging(0.838) TCGA-WJ-A86L-01 14 23398484 23398484 T A PRMT5 Silent p.T29T 0.43 TCGA-WJ-A86L-01 14 24590150 24590150 C A DCAF11 Missense_Mutation p.A399D 0.54 deleterious(0.01) possibly_damaging(0.749) TCGA-WJ-A86L-01 14 53251349 53251349 G - GNPNAT1 Frame_Shift_Del p.P7Lfs*35 0.26 TCGA-WJ-A86L-01 14 60212828 60212828 C A RTN1 Missense_Mutation p.V205L 0.13 tolerated(0.22) benign(0.02) TCGA-WJ-A86L-01 14 71524347 71524347 C T PCNX Silent p.F1586F 0.38 TCGA-WJ-A86L-01 14 75593444 75593444 C A NEK9 Missense_Mutation p.G61C 0.46 deleterious(0) probably_damaging(0.999) TCGA-WJ-A86L-01 15 23049159 23049159 G A NIPA1 Silent p.N220N 0.40 TCGA-WJ-A86L-01 15 35196558 35196558 T C AQR Silent p.K660K 0.43 TCGA-WJ-A86L-01 15 48633802 48633802 A T DUT Intron 0.52 TCGA-WJ-A86L-01 15 59480390 59480390 C T MYO1E Missense_Mutation p.G611S 0.50 deleterious(0.01) probably_damaging(1) TCGA-WJ-A86L-01 15 74704300 74704300 C T SEMA7A Missense_Mutation p.A450T 0.19 tolerated(0.22) benign(0.152) TCGA-WJ-A86L-01 15 90903908 90903908 A G ZNF774 Missense_Mutation p.Q282R 0.29 tolerated(0.11) possibly_damaging(0.87) TCGA-WJ-A86L-01 16 12996468 12996468 A T SHISA9 Missense_Mutation p.R183W 0.36 deleterious(0) probably_damaging(0.991) TCGA-WJ-A86L-01 16 48232119 48232119 C T ABCC11 Missense_Mutation p.S717N 0.44 tolerated(0.36) benign(0.005) TCGA-WJ-A86L-01 16 69727754 69727754 C T NFAT5 Silent p.P1342P 0.79 TCGA-WJ-A86L-01 16 71602012 71602012 A T TAT 3'UTR 0.09 TCGA-WJ-A86L-01 16 87451264 87451264 G - ZCCHC14 Frame_Shift_Del p.L259Cfs*44 0.25 TCGA-WJ-A86L-01 16 89260206 89260206 G - CDH15 Frame_Shift_Del p.S679Tfs*71 0.38 TCGA-WJ-A86L-01 17 11461182 11461182 C A SHISA6 Missense_Mutation p.P406Q 0.84 tolerated(0.45) benign(0.015) TCGA-WJ-A86L-01 17 34183788 34183788 G A C17orf66 Nonsense_Mutation p.Q392* 0.38 TCGA-WJ-A86L-01 17 34893593 34893593 G A PIGW Missense_Mutation p.G215R 0.28 deleterious(0) probably_damaging(0.925) TCGA-WJ-A86L-01 17 35945538 35945538 C T SYNRG Silent p.Q124Q 0.32 TCGA-WJ-A86L-01 17 40620123 40620123 G A ATP6V0A1 Missense_Mutation p.E98K 0.65 deleterious(0.01) benign(0.047) TCGA-WJ-A86L-01 17 42937333 42937333 C T EFTUD2 Silent p.L600L 0.32 TCGA-WJ-A86L-01 17 46023698 46023698 A C PNPO Missense_Mutation p.K186Q 0.32 tolerated(0.38) benign(0.028) TCGA-WJ-A86L-01 17 46670490 46670490 G A HOXB5 Silent p.I185I 0.63 TCGA-WJ-A86L-01 17 48148229 48148229 G A ITGA3 Missense_Mutation p.R229H 0.28 tolerated(0.08) possibly_damaging(0.889) TCGA-WJ-A86L-01 17 5013065 5013065 T C ZNF232 Missense_Mutation p.Q41R 0.75 tolerated(0.07) benign(0.145) TCGA-WJ-A86L-01 17 72518959 72518959 G A CD300LB Missense_Mutation p.S212F 0.43 tolerated(0.23) benign(0.031) TCGA-WJ-A86L-01 17 7578239 7578239 C A TP53 Nonsense_Mutation p.E204* 0.82 TCGA-WJ-A86L-01 17 79682599 79682599 A T SLC25A10 Missense_Mutation p.K102M 0.39 deleterious(0) probably_damaging(0.972) TCGA-WJ-A86L-01 17 79993869 79993869 A C DCXR Silent p.T234T 0.49 TCGA-WJ-A86L-01 18 22807356 22807356 A G ZNF521 Missense_Mutation p.C176R 0.46 deleterious(0) probably_damaging(0.999) TCGA-WJ-A86L-01 18 23866000 23866000 C A TAF4B Missense_Mutation p.S376Y 0.42 deleterious(0.04) benign(0.423) TCGA-WJ-A86L-01 18 44057756 44057756 C T LOXHD1 Silent p.G1056G 0.44 TCGA-WJ-A86L-01 19 15302777 15302777 G A NOTCH3 Missense_Mutation p.L225F 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-WJ-A86L-01 19 2137788 2137788 C T AP3D1 Missense_Mutation p.D71N 0.27 deleterious(0) probably_damaging(0.994) TCGA-WJ-A86L-01 19 36003635 36003635 G A DMKN Nonsense_Mutation p.Q162* 0.46 TCGA-WJ-A86L-01 19 36120568 36120568 A G RBM42 Missense_Mutation p.Y92C 0.48 deleterious(0) probably_damaging(0.995) TCGA-WJ-A86L-01 19 40882529 40882529 A G PLD3 Missense_Mutation p.I345V 0.33 deleterious(0.04) benign(0.211) TCGA-WJ-A86L-01 19 4704012 4704012 C G DPP9 Missense_Mutation p.D219H 0.32 deleterious(0) probably_damaging(1) TCGA-WJ-A86L-01 19 47548495 47548495 C A NPAS1 Missense_Mutation p.N453K 0.20 tolerated(0.26) benign(0.01) TCGA-WJ-A86L-01 19 47865878 47865878 G T DHX34 Silent p.S507S 0.47 TCGA-WJ-A86L-01 19 53015005 53015005 T A ZNF578 Nonsense_Mutation p.C457* 0.42 TCGA-WJ-A86L-01 19 57646441 57646441 T C ZIM3 Missense_Mutation p.S422G 0.50 tolerated(0.08) benign(0.096) TCGA-WJ-A86L-01 19 57933076 57933076 A G ZNF17 3'UTR 0.22 TCGA-WJ-A86L-01 19 9064481 9064481 C A MUC16 Missense_Mutation p.Q7655H 0.28 unknown(0) TCGA-WJ-A86L-01 1 116311265 116311265 G - CASQ2 5'UTR 0.35 TCGA-WJ-A86L-01 1 11985677 11985677 G T KIAA2013 Silent p.I206I 0.30 TCGA-WJ-A86L-01 1 120286648 120286648 C G PHGDH Missense_Mutation p.F529L 0.42 tolerated(0.1) benign(0.139) TCGA-WJ-A86L-01 1 145304611 145304611 C T NBPF10 Missense_Mutation p.S515F 0.17 possibly_damaging(0.48) TCGA-WJ-A86L-01 1 153233515 153233515 C T LOR Silent p.G30G 0.06 TCGA-WJ-A86L-01 1 156639315 156639315 G A NES Silent p.N1555N 0.16 TCGA-WJ-A86L-01 1 158225110 158225110 C G CD1A Missense_Mutation p.R99G 0.23 deleterious(0.01) benign(0.023) TCGA-WJ-A86L-01 1 158576910 158576910 A G OR10Z1 Missense_Mutation p.I228V 0.31 deleterious(0.01) benign(0.351) TCGA-WJ-A86L-01 1 167906041 167906041 C T DCAF6 5'Flank 0.62 TCGA-WJ-A86L-01 1 181724436 181724436 C G CACNA1E Missense_Mutation p.L1298V 0.30 deleterious(0) benign(0.333) TCGA-WJ-A86L-01 1 205589082 205589082 C A ELK4 Intron 0.29 TCGA-WJ-A86L-01 1 205886474 205886474 C A SLC26A9 Silent p.G755G 0.30 TCGA-WJ-A86L-01 1 206231357 206231357 C A AVPR1B 3'UTR 0.25 TCGA-WJ-A86L-01 1 208257756 208257756 T C PLXNA2 Missense_Mutation p.N756S 0.56 tolerated(0.23) benign(0.055) TCGA-WJ-A86L-01 1 213403855 213403855 G A RPS6KC1 Missense_Mutation p.D354N 0.23 deleterious(0.04) probably_damaging(0.998) TCGA-WJ-A86L-01 1 216420308 216420308 C A USH2A Missense_Mutation p.A810S 0.32 benign(0.084) TCGA-WJ-A86L-01 1 245027784 245027784 T C HNRNPU 5'Flank 0.41 TCGA-WJ-A86L-01 1 248524962 248524962 A C OR2T4 Missense_Mutation p.H27P 0.25 tolerated_low_confidence(0.28) benign(0.006) TCGA-WJ-A86L-01 1 27429729 27429732 TTCG - SLC9A1 Frame_Shift_Del p.N519Kfs*12 0.33 TCGA-WJ-A86L-01 1 38478438 38478438 G A UTP11L 5'UTR 0.43 TCGA-WJ-A86L-01 1 43774664 43774664 C T TIE1 Silent p.I350I 0.04 TCGA-WJ-A86L-01 1 47401258 47401258 A G CYP4A11 Missense_Mutation p.L191S 0.43 deleterious(0.03) possibly_damaging(0.58) TCGA-WJ-A86L-01 1 55165872 55165872 G A MROH7 Intron 0.41 TCGA-WJ-A86L-01 1 77333215 77333215 G T ST6GALNAC5 5'UTR 0.60 TCGA-WJ-A86L-01 1 87797781 87797781 G T LMO4 Missense_Mutation p.G28V 0.51 tolerated(0.07) possibly_damaging(0.767) TCGA-WJ-A86L-01 20 13894546 13894546 T G SEL1L2 Missense_Mutation p.K144T 0.35 deleterious(0.05) benign(0.432) TCGA-WJ-A86L-01 20 32295627 32295627 C T PXMP4 Missense_Mutation p.R175Q 0.50 tolerated(0.29) benign(0.006) TCGA-WJ-A86L-01 20 45170059 45170059 C T OCSTAMP Missense_Mutation p.V519M 0.16 deleterious_low_confidence(0.01) benign(0.328) TCGA-WJ-A86L-01 21 45819301 45819301 T C TRPM2 Missense_Mutation p.F729L 0.39 deleterious(0) probably_damaging(0.998) TCGA-WJ-A86L-01 22 29913322 29913322 T C THOC5 Missense_Mutation p.Q508R 0.47 tolerated(0.33) benign(0.069) TCGA-WJ-A86L-01 22 46685390 46685390 G T TTC38 Missense_Mutation p.D392Y 0.49 deleterious(0.01) possibly_damaging(0.873) TCGA-WJ-A86L-01 22 50946650 50946650 T C NCAPH2 5'Flank 0.50 TCGA-WJ-A86L-01 2 182388920 182388920 A T ITGA4 Missense_Mutation p.D731V 0.38 deleterious(0) probably_damaging(1) TCGA-WJ-A86L-01 2 187626928 187626928 G A FAM171B Nonsense_Mutation p.W620* 0.38 TCGA-WJ-A86L-01 2 202902322 202902322 C T FZD7 3'UTR 0.47 TCGA-WJ-A86L-01 2 204354655 204354655 C A RAPH1 Missense_Mutation p.L128F 0.42 benign(0.177) TCGA-WJ-A86L-01 2 209167004 209167004 G T PIKFYVE Missense_Mutation p.G416V 0.44 deleterious(0.02) probably_damaging(0.997) TCGA-WJ-A86L-01 2 234580748 234580748 T C UGT1A9 Silent p.V56V 0.39 TCGA-WJ-A86L-01 2 28771372 28771372 C G PLB1 Intron 0.11 TCGA-WJ-A86L-01 2 55844522 55844522 C G SMEK2 5'UTR 0.59 TCGA-WJ-A86L-01 2 61297534 61297534 C G KIAA1841 Missense_Mutation p.Q17E 0.42 tolerated_low_confidence(1) benign(0.069) TCGA-WJ-A86L-01 2 61315871 61315871 G A KIAA1841 Intron 0.42 TCGA-WJ-A86L-01 2 68753315 68753315 C A APLF Missense_Mutation p.Q249K 0.49 tolerated(0.11) benign(0.219) TCGA-WJ-A86L-01 3 122126169 122126169 A C FAM162A Missense_Mutation p.K102T 0.40 deleterious(0.01) probably_damaging(0.971) TCGA-WJ-A86L-01 3 126726661 126726661 G T PLXNA1 Missense_Mutation p.G673C 0.72 deleterious(0) probably_damaging(0.987) TCGA-WJ-A86L-01 3 194409471 194409471 G T FAM43A 3'UTR 0.35 TCGA-WJ-A86L-01 3 38080872 38080872 T A DLEC1 Silent p.S52S 0.40 TCGA-WJ-A86L-01 3 50388194 50388194 C A NPRL2 5'UTR 0.33 TCGA-WJ-A86L-01 3 8794828 8794828 G A OXTR Silent p.H335H 0.39 TCGA-WJ-A86L-01 3 89480381 89480381 A T EPHA3 Missense_Mutation p.M740L 0.40 tolerated(0.13) possibly_damaging(0.855) TCGA-WJ-A86L-01 4 113508829 113508829 C A C4orf21 Missense_Mutation p.R1128S 0.56 tolerated(0.66) benign(0.037) TCGA-WJ-A86L-01 4 122250606 122250606 T C QRFPR Missense_Mutation p.K387E 0.43 tolerated(0.22) benign(0.004) TCGA-WJ-A86L-01 4 123179983 123179983 T C KIAA1109 Silent p.S2249S 0.34 TCGA-WJ-A86L-01 4 141294733 141294742 GGCTGGGACG - SCOC Frame_Shift_Del p.G18Sfs*58 0.40 TCGA-WJ-A86L-01 4 153243810 153243810 T C FBXW7 3'UTR 0.62 TCGA-WJ-A86L-01 4 169327112 169327112 G - DDX60L Frame_Shift_Del p.Q1068Kfs*2 0.27 TCGA-WJ-A86L-01 4 38138875 38138875 G A TBC1D1 Silent p.T1142T 0.31 TCGA-WJ-A86L-01 4 41748004 41748004 C T PHOX2B Silent p.A255A 0.49 TCGA-WJ-A86L-01 4 75938355 75938355 G T PARM1 Missense_Mutation p.S255I 0.37 deleterious(0) probably_damaging(0.999) TCGA-WJ-A86L-01 4 79350344 79350344 C A FRAS1 Silent p.R1603R 0.43 TCGA-WJ-A86L-01 4 79432632 79432632 G A FRAS1 Missense_Mutation p.D3329N 0.43 possibly_damaging(0.628) TCGA-WJ-A86L-01 5 138260300 138260300 G T CTNNA1 Missense_Mutation p.A550S 0.50 tolerated(0.39) benign(0.048) TCGA-WJ-A86L-01 5 140208117 140208117 G A PCDHA6 Silent p.L147L 0.49 TCGA-WJ-A86L-01 5 161576316 161576316 C G GABRG2 Missense_Mutation p.N415K 0.38 tolerated(0.37) possibly_damaging(0.615) TCGA-WJ-A86L-01 5 170319441 170319441 G T RANBP17 Missense_Mutation p.V103F 0.47 deleterious(0) probably_damaging(0.996) TCGA-WJ-A86L-01 5 24537662 24537662 T A CDH10 Missense_Mutation p.D118V 0.54 deleterious(0) probably_damaging(0.998) TCGA-WJ-A86L-01 5 5235288 5235288 C G ADAMTS16 Missense_Mutation p.T671S 0.48 deleterious(0.01) probably_damaging(0.971) TCGA-WJ-A86L-01 5 79032250 79032250 G T CMYA5 Missense_Mutation p.Q2554H 0.36 benign(0.36) TCGA-WJ-A86L-01 6 122720756 122720756 G T HSF2 5'UTR 0.43 TCGA-WJ-A86L-01 6 26468992 26468992 G T BTN2A1 3'UTR 0.25 TCGA-WJ-A86L-01 6 30525095 30525095 C A PRR3 5'UTR 0.40 TCGA-WJ-A86L-01 6 32789799 32789799 A G TAP2 3'UTR 0.41 TCGA-WJ-A86L-01 6 35211877 35211877 G A SCUBE3 Missense_Mutation p.A737T 0.45 tolerated(0.18) benign(0.26) TCGA-WJ-A86L-01 6 39876849 39876849 G A MOCS1 Missense_Mutation p.R378W 0.55 deleterious(0) probably_damaging(0.999) TCGA-WJ-A86L-01 6 486627 486627 T A EXOC2 3'UTR 0.27 TCGA-WJ-A86L-01 6 70981392 70981392 C A COL9A1 Missense_Mutation p.G370V 0.47 probably_damaging(1) TCGA-WJ-A86L-01 6 79692616 79692616 T A PHIP Missense_Mutation p.E919V 0.56 tolerated(0.19) probably_damaging(0.966) TCGA-WJ-A86L-01 6 79727210 79727210 T A PHIP Missense_Mutation p.E362V 0.40 deleterious(0) probably_damaging(0.991) TCGA-WJ-A86L-01 6 84563041 84563041 G T RIPPLY2 5'UTR 0.42 TCGA-WJ-A86L-01 6 97587213 97587213 G T KLHL32 3'UTR 0.48 TCGA-WJ-A86L-01 7 105098324 105098326 AGT - PUS7 In_Frame_Del p.T633del 0.36 TCGA-WJ-A86L-01 7 138552730 138552730 G A KIAA1549 Silent p.I1640I 0.50 TCGA-WJ-A86L-01 7 148288121 148288121 G A C7orf33 Missense_Mutation p.R35Q 0.38 tolerated_low_confidence(0.27) benign(0.417) TCGA-WJ-A86L-01 7 19748398 19748398 C T TWISTNB Missense_Mutation p.R81H 0.56 deleterious(0) probably_damaging(0.983) TCGA-WJ-A86L-01 7 20698196 20698196 T G ABCB5 Missense_Mutation p.I535S 0.43 deleterious(0) probably_damaging(0.993) TCGA-WJ-A86L-01 7 27186824 27186824 C A HOXA6 Intron 0.40 TCGA-WJ-A86L-01 7 35242082 35242082 C T TBX20 Missense_Mutation p.G435E 0.35 deleterious_low_confidence(0) possibly_damaging(0.767) TCGA-WJ-A86L-01 7 45122346 45122346 T C NACAD Missense_Mutation p.T1145A 0.35 tolerated(0.29) benign(0.003) TCGA-WJ-A86L-01 7 65557597 65557597 G T ASL Missense_Mutation p.E399D 0.45 deleterious(0.02) probably_damaging(0.994) TCGA-WJ-A86L-01 7 75864559 75864559 C A SRRM3 Missense_Mutation p.R59S 0.50 deleterious(0) unknown(0) TCGA-WJ-A86L-01 7 82387797 82387797 C T PCLO 3'UTR 0.27 TCGA-WJ-A86L-01 7 96653687 96653688 GG T DLX5 Frame_Shift_Del p.S83* 0.29 TCGA-WJ-A86L-01 8 110417293 110417293 C A PKHD1L1 Missense_Mutation p.P535T 0.28 tolerated(0.07) benign(0.297) TCGA-WJ-A86L-01 8 110417294 110417294 C A PKHD1L1 Missense_Mutation p.P535Q 0.28 tolerated(0.05) possibly_damaging(0.798) TCGA-WJ-A86L-01 8 117954838 117954838 A C AARD Missense_Mutation p.L122F 0.58 deleterious(0.01) probably_damaging(0.934) TCGA-WJ-A86L-01 8 142166010 142166010 G T DENND3 Silent p.T299T 0.52 TCGA-WJ-A86L-01 8 69032459 69032459 G C PREX2 Missense_Mutation p.G1178A 0.48 deleterious(0) probably_damaging(0.996) TCGA-WJ-A86L-01 8 87616352 87616352 G T CNGB3 Missense_Mutation p.L584M 0.44 deleterious(0) probably_damaging(0.993) TCGA-WJ-A86L-01 9 104449360 104449360 C T GRIN3A Nonsense_Mutation p.W274* 0.05 TCGA-WJ-A86L-01 9 105767953 105767953 G A CYLC2 Missense_Mutation p.G347D 0.44 deleterious_low_confidence(0) unknown(0) TCGA-WJ-A86L-01 9 135505734 135505735 CC A DDX31 Frame_Shift_Del p.R621Lfs*42 0.35 TCGA-WJ-A86L-01 9 21968150 21968150 G T CDKN2A 3'UTR 0.27 TCGA-WJ-A86L-01 9 79952253 79952253 G A VPS13A Missense_Mutation p.G2060S 0.04 tolerated(0.56) benign(0.022) TCGA-WJ-A86L-01 9 98232184 98232184 G - PTCH1 Frame_Shift_Del p.M587Wfs*36 0.28 TCGA-WJ-A86L-01 X 105066720 105066720 G T NRK 5'UTR 0.27 TCGA-WJ-A86L-01 X 119389946 119389946 G T ZBTB33 3'UTR 0.41 TCGA-WJ-A86L-01 X 50658936 50658936 G T BMP15 Missense_Mutation p.D170Y 0.47 tolerated(0.06) benign(0.002) TCGA-WJ-A86L-01 X 55650548 55650548 C T FOXR2 Missense_Mutation p.S135F 0.54 tolerated(0.28) benign(0.008) TCGA-WJ-A86L-01 X 86069740 86069740 G T DACH2 Missense_Mutation p.L529F 0.12 deleterious(0) probably_damaging(0.999) TCGA-WQ-A9G7-01 10 101089165 101089165 G A CNNM1 Silent p.A7A 0.36 TCGA-WQ-A9G7-01 10 102048145 102048145 C T PKD2L1 3'UTR 0.35 TCGA-WQ-A9G7-01 10 102684351 102684351 C T FAM178A Silent p.A531A 0.13 TCGA-WQ-A9G7-01 10 104171962 104171962 C T PSD Missense_Mutation p.A591T 0.36 deleterious(0) probably_damaging(0.999) TCGA-WQ-A9G7-01 10 104595102 104595102 A G CYP17A1 Silent p.A115A 0.13 TCGA-WQ-A9G7-01 10 105037580 105037580 C T INA Silent p.D204D 0.13 TCGA-WQ-A9G7-01 10 105344832 105344832 G A NEURL1 Missense_Mutation p.D397N 0.31 tolerated(0.08) probably_damaging(1) TCGA-WQ-A9G7-01 10 115663496 115663499 GTAA - NHLRC2 Splice_Site p.X568_splice 0.12 TCGA-WQ-A9G7-01 10 123310909 123310929 GTTGGCCGCAGGCACAGCATG - FGFR2 In_Frame_Del p.H167_N173del 0.32 TCGA-WQ-A9G7-01 10 124812642 124812642 C T ACADSB Silent p.Y398Y 0.20 TCGA-WQ-A9G7-01 10 127526922 127526922 A C DHX32 Nonsense_Mutation p.L639* 0.42 TCGA-WQ-A9G7-01 10 134012411 134012411 G A DPYSL4 Silent p.P249P 0.21 TCGA-WQ-A9G7-01 10 135168879 135168879 G T FUOM Missense_Mutation p.L154M 0.40 tolerated_low_confidence(0.09) benign(0.341) TCGA-WQ-A9G7-01 10 17126368 17126368 C T CUBN Missense_Mutation p.V735I 0.14 tolerated(1) benign(0.015) TCGA-WQ-A9G7-01 10 26434457 26434457 A G MYO3A Silent p.A833A 0.15 TCGA-WQ-A9G7-01 10 43883054 43883054 C T HNRNPF Missense_Mutation p.M93I 0.39 deleterious(0.01) possibly_damaging(0.47) TCGA-WQ-A9G7-01 10 49659075 49659075 C A ARHGAP22 Missense_Mutation p.C382F 0.16 tolerated(0.67) benign(0.014) TCGA-WQ-A9G7-01 10 50947771 50947771 C T OGDHL Missense_Mutation p.G752D 0.19 deleterious(0) probably_damaging(0.996) TCGA-WQ-A9G7-01 10 54053815 54053815 T C PRKG1 3'UTR 0.33 TCGA-WQ-A9G7-01 10 55973769 55973769 G A PCDH15 Missense_Mutation p.P342L 0.38 tolerated(0.2) benign(0.005) TCGA-WQ-A9G7-01 10 61828444 61828444 T - ANK3 Frame_Shift_Del p.K4065Nfs*32 0.16 TCGA-WQ-A9G7-01 10 64566156 64566156 G A ADO 3'UTR 0.15 TCGA-WQ-A9G7-01 10 69648662 69648662 A G SIRT1 Silent p.Q190Q 0.27 TCGA-WQ-A9G7-01 10 70176478 70176478 G A DNA2 Silent p.N1120N 0.05 TCGA-WQ-A9G7-01 10 90512278 90512278 C T LIPK Missense_Mutation p.T322I 0.20 tolerated(0.09) benign(0.169) TCGA-WQ-A9G7-01 10 97453178 97453178 G A TCTN3 Silent p.C104C 0.12 TCGA-WQ-A9G7-01 11 100221535 100221535 G A CNTN5 Missense_Mutation p.V1045I 0.20 tolerated(1) benign(0.035) TCGA-WQ-A9G7-01 11 105009586 105009586 A T CARD18 Missense_Mutation p.L76H 0.06 deleterious(0) probably_damaging(0.971) TCGA-WQ-A9G7-01 11 105880665 105880665 A G MSANTD4 Missense_Mutation p.L212P 0.32 deleterious(0) possibly_damaging(0.879) TCGA-WQ-A9G7-01 11 107299544 107299544 T A CWF19L2 Missense_Mutation p.T472S 0.29 tolerated(0.71) benign(0.007) TCGA-WQ-A9G7-01 11 1103206 1103206 C T MUC2 Silent p.S2652S 0.30 TCGA-WQ-A9G7-01 11 111613287 111613287 C T PPP2R1B Missense_Mutation p.A553T 0.11 deleterious(0) possibly_damaging(0.65) TCGA-WQ-A9G7-01 11 111953315 111953316 - A C11orf57 Frame_Shift_Ins p.Q170Tfs*18 0.18 TCGA-WQ-A9G7-01 11 118923017 118923017 T C HYOU1 Missense_Mutation p.E371G 0.31 tolerated(0.42) benign(0.004) TCGA-WQ-A9G7-01 11 119291593 119291593 G A THY1 Missense_Mutation p.A8V 0.26 tolerated(0.23) benign(0.01) TCGA-WQ-A9G7-01 11 123810463 123810463 T A OR4D5 Missense_Mutation p.V47D 0.32 deleterious(0) benign(0.069) TCGA-WQ-A9G7-01 11 125893349 125893349 A G CDON Missense_Mutation p.L8S 0.23 deleterious(0.03) benign(0.035) TCGA-WQ-A9G7-01 11 126215565 126215566 - T DCPS 3'UTR 0.21 TCGA-WQ-A9G7-01 11 12883850 12883850 A G TEAD1 Missense_Mutation p.T86A 0.24 deleterious(0) probably_damaging(0.911) TCGA-WQ-A9G7-01 11 134217281 134217281 T C GLB1L2 Missense_Mutation p.V171A 0.16 deleterious(0.03) possibly_damaging(0.573) TCGA-WQ-A9G7-01 11 1651810 1651810 C T KRTAP5-5 3'UTR 0.13 TCGA-WQ-A9G7-01 11 18195145 18195145 C T MRGPRX4 Silent p.S114S 0.12 TCGA-WQ-A9G7-01 11 27018393 27018393 A T FIBIN 3'UTR 0.25 TCGA-WQ-A9G7-01 11 27018578 27018579 - A FIBIN 3'UTR 0.21 TCGA-WQ-A9G7-01 11 30034166 30034166 A G KCNA4 Silent p.G20G 0.15 TCGA-WQ-A9G7-01 11 31327168 31327168 T - DCDC1 Frame_Shift_Del p.I250Lfs*7 0.24 TCGA-WQ-A9G7-01 11 33309022 33309022 T C HIPK3 Silent p.T354T 0.12 TCGA-WQ-A9G7-01 11 33566862 33566862 C T KIAA1549L Missense_Mutation p.T811M 0.25 deleterious(0) probably_damaging(0.961) TCGA-WQ-A9G7-01 11 45955607 45955607 G - PHF21A Frame_Shift_Del p.P652Lfs*104 0.25 TCGA-WQ-A9G7-01 11 46456582 46456582 C T AMBRA1 Missense_Mutation p.V790M 0.11 deleterious(0.01) possibly_damaging(0.752) TCGA-WQ-A9G7-01 11 49974682 49974682 T C OR4C13 Silent p.S236S 0.10 TCGA-WQ-A9G7-01 11 5475291 5475291 T C OR51I2 Silent p.D191D 0.13 TCGA-WQ-A9G7-01 11 551775 551775 C A LRRC56 Silent p.G307G 0.37 TCGA-WQ-A9G7-01 11 55905120 55905120 A G OR8J3 Silent p.I25I 0.17 TCGA-WQ-A9G7-01 11 56431409 56431409 C T OR5AR1 Missense_Mutation p.A83V 0.25 tolerated(1) benign(0.003) TCGA-WQ-A9G7-01 11 57583392 57583392 C T CTNND1 Silent p.D938D 0.20 TCGA-WQ-A9G7-01 11 5878052 5878052 G T OR52E8 Missense_Mutation p.P294H 0.12 deleterious(0.01) benign(0.417) TCGA-WQ-A9G7-01 11 59814440 59814440 T - OOSP2 Frame_Shift_Del p.S125Lfs*6 0.20 TCGA-WQ-A9G7-01 11 6007754 6007754 A G OR52L1 Missense_Mutation p.M136T 0.10 deleterious(0) probably_damaging(0.989) TCGA-WQ-A9G7-01 11 62289805 62289805 A G AHNAK Silent p.G4028G 0.10 TCGA-WQ-A9G7-01 11 626447 626447 G A SCT Missense_Mutation p.T117I 0.12 deleterious_low_confidence(0) possibly_damaging(0.507) TCGA-WQ-A9G7-01 11 64338765 64338765 C T SLC22A11 3'UTR 0.36 TCGA-WQ-A9G7-01 11 64577275 64577275 G T MEN1 Missense_Mutation p.L103M 0.17 deleterious(0.04) probably_damaging(0.99) TCGA-WQ-A9G7-01 11 65123857 65123857 A C TIGD3 Missense_Mutation p.D193A 0.29 deleterious(0.01) possibly_damaging(0.744) TCGA-WQ-A9G7-01 11 65156924 65156924 G A FRMD8 Missense_Mutation p.A60T 0.23 tolerated(0.21) benign(0.002) TCGA-WQ-A9G7-01 11 65396885 65396885 T C PCNXL3 Silent p.P1333P 0.11 TCGA-WQ-A9G7-01 11 66359567 66359567 C T CCDC87 Missense_Mutation p.R307Q 0.27 tolerated(0.75) benign(0) TCGA-WQ-A9G7-01 11 66391728 66391728 C T RBM14 Silent p.A127A 0.25 TCGA-WQ-A9G7-01 11 68192642 68192642 C T LRP5 Silent p.R1103R 0.16 TCGA-WQ-A9G7-01 11 68201261 68201261 G A LRP5 Missense_Mutation p.G1319S 0.29 deleterious(0.01) probably_damaging(0.985) TCGA-WQ-A9G7-01 11 71293746 71293746 G A KRTAP5-11 Silent p.C46C 0.21 TCGA-WQ-A9G7-01 11 74414512 74414512 C T CHRDL2 Missense_Mutation p.G262R 0.20 deleterious(0) probably_damaging(1) TCGA-WQ-A9G7-01 11 75140869 75140869 C T KLHL35 Missense_Mutation p.R269H 0.18 tolerated(0.53) unknown(0) TCGA-WQ-A9G7-01 11 77934490 77934490 G - GAB2 Frame_Shift_Del p.P512Lfs*19 0.12 TCGA-WQ-A9G7-01 11 92714946 92714946 G A MTNR1B Missense_Mutation p.R186H 0.13 tolerated(0.09) benign(0.373) TCGA-WQ-A9G7-01 11 93429506 93429506 A G KIAA1731 Silent p.S564S 0.26 TCGA-WQ-A9G7-01 11 93471438 93471438 T C TAF1D Missense_Mutation p.Y99C 0.13 deleterious(0.02) probably_damaging(1) TCGA-WQ-A9G7-01 12 112327908 112327908 C T MAPKAPK5 Silent p.C429C 0.21 TCGA-WQ-A9G7-01 12 113534661 113534661 G A DTX1 Missense_Mutation p.G594S 0.17 deleterious(0) probably_damaging(0.999) TCGA-WQ-A9G7-01 12 114392958 114392958 C A RBM19 Missense_Mutation p.G300V 0.12 deleterious(0) probably_damaging(0.997) TCGA-WQ-A9G7-01 12 122625584 122625584 G A MLXIP Silent p.A864A 0.47 TCGA-WQ-A9G7-01 12 123481370 123481370 G T PITPNM2 Silent p.S520S 0.56 TCGA-WQ-A9G7-01 12 130015679 130015679 T C TMEM132D Missense_Mutation p.E347G 0.04 deleterious(0.01) benign(0.098) TCGA-WQ-A9G7-01 12 130648315 130648315 C T FZD10 Silent p.G276G 0.31 TCGA-WQ-A9G7-01 12 131283121 131283121 G A STX2 Silent p.H245H 0.09 TCGA-WQ-A9G7-01 12 14628887 14628887 A T ATF7IP Missense_Mutation p.S976C 0.41 tolerated_low_confidence(0.05) unknown(0) TCGA-WQ-A9G7-01 12 14928129 14928129 C T H2AFJ 3'UTR 0.07 TCGA-WQ-A9G7-01 12 1902716 1902717 - G CACNA2D4 3'UTR 0.31 TCGA-WQ-A9G7-01 12 19418725 19418725 A G PLEKHA5 Missense_Mutation p.S218G 0.04 deleterious(0) probably_damaging(0.949) TCGA-WQ-A9G7-01 12 21693401 21693401 G T GYS2 Silent p.I584I 0.18 TCGA-WQ-A9G7-01 12 21960410 21960410 G A ABCC9 Missense_Mutation p.A1440V 0.47 deleterious(0.02) benign(0.213) TCGA-WQ-A9G7-01 12 2719737 2719737 C T CACNA1C Missense_Mutation p.R1217W 0.41 deleterious(0) probably_damaging(0.971) TCGA-WQ-A9G7-01 12 2791754 2791756 AGG - CACNA1C In_Frame_Del p.E1878del 0.20 TCGA-WQ-A9G7-01 12 27933999 27933999 T C KLHL42 Missense_Mutation p.Y246H 0.19 tolerated(0.18) probably_damaging(1) TCGA-WQ-A9G7-01 12 4714102 4714102 G A DYRK4 Silent p.R268R 0.17 TCGA-WQ-A9G7-01 12 4854653 4854653 T C GALNT8 Missense_Mutation p.F307L 0.18 tolerated(0.05) benign(0.34) TCGA-WQ-A9G7-01 12 50042064 50042064 C G FMNL3 Missense_Mutation p.S863T 0.14 tolerated(0.57) benign(0.083) TCGA-WQ-A9G7-01 12 53227586 53227586 G A KRT79 Silent p.F153F 0.24 TCGA-WQ-A9G7-01 12 55758921 55758921 C T OR6C75 Silent p.D9D 0.15 TCGA-WQ-A9G7-01 12 56435784 56435784 C T RPS26 5'UTR 0.50 TCGA-WQ-A9G7-01 12 57605934 57605934 G - LRP1 Frame_Shift_Del p.A4463Pfs*2 0.11 TCGA-WQ-A9G7-01 12 57858504 57858504 G T GLI1 Missense_Mutation p.R81L 0.09 deleterious(0) probably_damaging(0.994) TCGA-WQ-A9G7-01 12 58002944 58002944 G A DTX3 3'UTR 0.17 TCGA-WQ-A9G7-01 12 668587 668587 G A B4GALNT3 Missense_Mutation p.R963K 0.12 deleterious(0) probably_damaging(0.999) TCGA-WQ-A9G7-01 12 6947183 6947183 G A LEPREL2 Missense_Mutation p.A630T 0.18 tolerated(0.11) possibly_damaging(0.596) TCGA-WQ-A9G7-01 12 70983909 70983909 G A PTPRB Silent p.L629L 0.10 TCGA-WQ-A9G7-01 12 70983921 70983921 G A PTPRB Nonsense_Mutation p.Q625* 0.09 TCGA-WQ-A9G7-01 12 7310163 7310163 G A CLSTN3 Missense_Mutation p.R869H 0.49 deleterious(0.01) probably_damaging(0.909) TCGA-WQ-A9G7-01 12 75678791 75678791 G A CAPS2 Missense_Mutation p.R508C 0.20 deleterious(0.01) probably_damaging(0.977) TCGA-WQ-A9G7-01 12 81671194 81671195 - T PPFIA2 Splice_Site p.X1071_splice 0.35 TCGA-WQ-A9G7-01 12 83379718 83379718 C T TMTC2 Missense_Mutation p.R655C 0.28 deleterious(0) probably_damaging(0.99) TCGA-WQ-A9G7-01 12 9087824 9087824 C T PHC1 Silent p.S786S 0.16 TCGA-WQ-A9G7-01 12 94543433 94543433 C T PLXNC1 Missense_Mutation p.A229V 0.14 tolerated(0.17) benign(0.002) TCGA-WQ-A9G7-01 12 95693908 95693908 T - VEZT Intron 0.43 TCGA-WQ-A9G7-01 12 95927482 95927483 - T USP44 Frame_Shift_Ins p.I184Nfs*19 0.27 TCGA-WQ-A9G7-01 13 111567411 111567411 G A ANKRD10 5'UTR 0.54 TCGA-WQ-A9G7-01 13 113212590 113212590 G A TUBGCP3 Silent p.S156S 0.16 TCGA-WQ-A9G7-01 13 20004677 20004677 A G TPTE2 Silent p.C411C 0.30 TCGA-WQ-A9G7-01 13 25480425 25480425 G A CENPJ Missense_Mutation p.A584V 0.32 deleterious(0.02) possibly_damaging(0.695) TCGA-WQ-A9G7-01 13 28519341 28519341 A G ATP5EP2 5'Flank 0.40 TCGA-WQ-A9G7-01 13 36700191 36700191 G A DCLK1 Silent p.N28N 0.28 TCGA-WQ-A9G7-01 13 36765969 36765969 C T SOHLH2 Missense_Mutation p.E242K 0.16 tolerated(0.05) possibly_damaging(0.735) TCGA-WQ-A9G7-01 13 48669113 48669113 A G MED4 Silent p.L34L 0.18 TCGA-WQ-A9G7-01 13 50586446 50586446 A G TRIM13 Missense_Mutation p.T127A 0.20 tolerated(0.42) benign(0.004) TCGA-WQ-A9G7-01 13 50591836 50591836 T C TRIM13 3'Flank 0.21 TCGA-WQ-A9G7-01 13 52952234 52952234 A G THSD1 Missense_Mutation p.L624P 0.42 deleterious(0.01) probably_damaging(0.966) TCGA-WQ-A9G7-01 13 74289619 74289619 G A KLF12 Missense_Mutation p.R305W 0.10 tolerated(0.05) possibly_damaging(0.895) TCGA-WQ-A9G7-01 13 88331679 88331679 A G SLITRK5 3'UTR 0.04 TCGA-WQ-A9G7-01 14 101200731 101200731 G A DLK1 Missense_Mutation p.C217Y 0.34 deleterious(0) probably_damaging(1) TCGA-WQ-A9G7-01 14 103371803 103371803 C T TRAF3 Silent p.D463D 0.14 TCGA-WQ-A9G7-01 14 104040491 104040491 C T RP11-73M18.2 Silent p.G136G 0.10 TCGA-WQ-A9G7-01 14 104646180 104646180 G A KIF26A 3'Flank 0.29 TCGA-WQ-A9G7-01 14 20774104 20774104 C T TTC5 5'UTR 0.33 TCGA-WQ-A9G7-01 14 21769124 21769124 G T RPGRIP1 Splice_Site p.X73_splice 0.31 TCGA-WQ-A9G7-01 14 24877347 24877347 T C NYNRIN Silent p.A157A 0.32 TCGA-WQ-A9G7-01 14 61190367 61190367 T C SIX4 Silent p.L142L 0.22 TCGA-WQ-A9G7-01 14 67768752 67768755 GAGA - MPP5 Frame_Shift_Del p.R241Ffs*13 0.40 TCGA-WQ-A9G7-01 14 74205773 74205773 G - ELMSAN1 Frame_Shift_Del p.N314Tfs*4 0.28 TCGA-WQ-A9G7-01 14 77845085 77845085 C T SAMD15 Missense_Mutation p.R442C 0.28 tolerated(0.18) benign(0.224) TCGA-WQ-A9G7-01 14 88970793 88970793 A G PTPN21 Missense_Mutation p.V188A 0.15 tolerated(0.07) possibly_damaging(0.723) TCGA-WQ-A9G7-01 14 95660226 95660226 C T CLMN Missense_Mutation p.A934T 0.20 tolerated(0.09) possibly_damaging(0.564) TCGA-WQ-A9G7-01 14 95679562 95679562 G A CLMN Missense_Mutation p.T201M 0.09 deleterious(0) probably_damaging(0.997) TCGA-WQ-A9G7-01 15 22369119 22369119 A T OR4M2 Missense_Mutation p.T182S 0.08 deleterious(0.02) possibly_damaging(0.532) TCGA-WQ-A9G7-01 15 40093624 40093624 C T GPR176 Silent p.A419A 0.27 TCGA-WQ-A9G7-01 15 41810241 41810241 A G RPAP1 Missense_Mutation p.V1312A 0.07 deleterious(0) benign(0.16) TCGA-WQ-A9G7-01 15 42159207 42159207 C T SPTBN5 Missense_Mutation p.A2144T 0.21 possibly_damaging(0.619) TCGA-WQ-A9G7-01 15 42165687 42165687 T C SPTBN5 Intron 0.12 TCGA-WQ-A9G7-01 15 43656143 43656143 G A ZSCAN29 Missense_Mutation p.R554C 0.10 tolerated(0.07) possibly_damaging(0.614) TCGA-WQ-A9G7-01 15 49171944 49171944 T C EID1 3'UTR 0.17 TCGA-WQ-A9G7-01 15 50884267 50884267 T C TRPM7 Missense_Mutation p.T1389A 0.11 deleterious_low_confidence(0.03) benign(0) TCGA-WQ-A9G7-01 15 65268816 65268816 A G SPG21 Silent p.D101D 0.20 TCGA-WQ-A9G7-01 15 65368919 65368919 T C KBTBD13 5'Flank 0.38 TCGA-WQ-A9G7-01 15 66821892 66821892 G A ZWILCH Missense_Mutation p.R379H 0.19 tolerated(0.58) benign(0.001) TCGA-WQ-A9G7-01 15 70959811 70959814 TGTT - UACA Frame_Shift_Del p.K1070Sfs*2 0.19 TCGA-WQ-A9G7-01 15 74043430 74043430 G A C15orf59 Silent p.D14D 0.14 TCGA-WQ-A9G7-01 15 83357549 83357549 T C AP3B2 Missense_Mutation p.Y100C 0.14 deleterious(0) probably_damaging(0.997) TCGA-WQ-A9G7-01 15 90192526 90192526 G A KIF7 Missense_Mutation p.A201V 0.12 deleterious(0) benign(0.118) TCGA-WQ-A9G7-01 15 90784264 90784264 C T GDPGP1 Nonsense_Mutation p.Q42* 0.18 TCGA-WQ-A9G7-01 15 91424700 91424700 C T FURIN Silent p.C659C 0.16 TCGA-WQ-A9G7-01 15 94943190 94943190 G A MCTP2 Missense_Mutation p.R644H 0.17 deleterious(0) possibly_damaging(0.485) TCGA-WQ-A9G7-01 16 19471655 19471655 A G TMC5 Missense_Mutation p.R383G 0.38 deleterious(0) possibly_damaging(0.786) TCGA-WQ-A9G7-01 16 2012581 2012581 A G RPS2 Missense_Mutation p.V209A 0.12 tolerated(0.13) possibly_damaging(0.459) TCGA-WQ-A9G7-01 16 22343411 22343411 A - POLR3E Frame_Shift_Del p.N660Ifs*8 0.16 TCGA-WQ-A9G7-01 16 25176033 25176033 C T LCMT1 Silent p.Y228Y 0.17 TCGA-WQ-A9G7-01 16 27895830 27895830 G A GSG1L Missense_Mutation p.A176V 0.24 tolerated(0.06) benign(0.391) TCGA-WQ-A9G7-01 16 30198463 30198463 C T CORO1A Silent p.S185S 0.33 TCGA-WQ-A9G7-01 16 3778436 3778436 C T CREBBP Silent p.Q2204Q 0.38 TCGA-WQ-A9G7-01 16 4432614 4432614 C T VASN Missense_Mutation p.A579V 0.20 tolerated(0.49) benign(0.09) TCGA-WQ-A9G7-01 16 4851539 4851539 G A ROGDI Silent p.P55P 0.36 TCGA-WQ-A9G7-01 16 67181027 67181027 T C C16orf70 Missense_Mutation p.L421P 0.36 deleterious_low_confidence(0) benign(0.165) TCGA-WQ-A9G7-01 16 67214463 67214463 C T KIAA0895L Silent p.P17P 0.17 TCGA-WQ-A9G7-01 16 67241435 67241435 C A LRRC29 Intron 0.38 TCGA-WQ-A9G7-01 16 67683458 67683458 A G RLTPR Missense_Mutation p.N619D 0.32 deleterious(0) probably_damaging(0.999) TCGA-WQ-A9G7-01 16 70605061 70605061 C T SF3B3 Missense_Mutation p.R1158W 0.40 deleterious(0) probably_damaging(1) TCGA-WQ-A9G7-01 16 744677 744677 C T FBXL16 Silent p.K416K 0.37 TCGA-WQ-A9G7-01 16 844174 844174 T C CHTF18 Silent p.S641S 0.51 TCGA-WQ-A9G7-01 16 88786942 88786942 T C PIEZO1 Splice_Site p.X1934_splice 0.24 TCGA-WQ-A9G7-01 16 89354978 89354978 G A ANKRD11 Silent p.D234D 0.39 TCGA-WQ-A9G7-01 16 9858337 9858337 G A GRIN2A Missense_Mutation p.R1022C 0.30 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-WQ-A9G7-01 17 10618642 10618642 A - TMEM220 3'UTR 0.10 TCGA-WQ-A9G7-01 17 12897811 12897811 G A ELAC2 Missense_Mutation p.A680V 0.12 deleterious(0) probably_damaging(0.973) TCGA-WQ-A9G7-01 17 15492292 15492292 C T CDRT1 Silent p.V752V 0.46 TCGA-WQ-A9G7-01 17 16330835 16330835 G - TRPV2 Frame_Shift_Del p.I444Sfs*23 0.33 TCGA-WQ-A9G7-01 17 17723627 17723627 G A SREBF1 Silent p.P130P 0.51 TCGA-WQ-A9G7-01 17 2227356 2227356 A - SRR 3'UTR 0.35 TCGA-WQ-A9G7-01 17 27899414 27899414 G A TP53I13 Silent p.P256P 0.11 TCGA-WQ-A9G7-01 17 30530945 30530945 T C RHOT1 Missense_Mutation p.Y457H 0.21 tolerated(0.09) benign(0.213) TCGA-WQ-A9G7-01 17 33434093 33434093 C T RAD51D Missense_Mutation p.V152I 0.35 deleterious(0.05) possibly_damaging(0.573) TCGA-WQ-A9G7-01 17 36876002 36876002 G T MLLT6 Splice_Site p.X670_splice 0.32 TCGA-WQ-A9G7-01 17 36912245 36912245 T C PSMB3 Splice_Site p.X99_splice 0.32 TCGA-WQ-A9G7-01 17 3844585 3844585 C T ATP2A3 Missense_Mutation p.V594M 0.44 deleterious(0) probably_damaging(1) TCGA-WQ-A9G7-01 17 38564371 38564371 G A TOP2A Nonsense_Mutation p.R450* 0.19 TCGA-WQ-A9G7-01 17 39019563 39019563 G A KRT12 Silent p.A376A 0.36 TCGA-WQ-A9G7-01 17 40315341 40315341 C T KCNH4 Missense_Mutation p.G830D 0.24 deleterious(0) probably_damaging(1) TCGA-WQ-A9G7-01 17 41001289 41001289 C T AOC2 Missense_Mutation p.A592V 0.23 deleterious(0.02) benign(0.009) TCGA-WQ-A9G7-01 17 42030227 42030227 G A PYY 3'UTR 0.12 TCGA-WQ-A9G7-01 17 42266521 42266521 C T TMUB2 Missense_Mutation p.T56I 0.13 deleterious(0) probably_damaging(0.999) TCGA-WQ-A9G7-01 17 42987350 42987350 T C GFAP 3'Flank 0.46 TCGA-WQ-A9G7-01 17 43003273 43003273 G A KIF18B 3'Flank 0.33 TCGA-WQ-A9G7-01 17 43322423 43322423 G A FMNL1 Silent p.P892P 0.16 TCGA-WQ-A9G7-01 17 44803929 44803929 G A NSF Silent p.A592A 0.32 TCGA-WQ-A9G7-01 17 48356249 48356249 G A TMEM92 Silent p.P86P 0.13 TCGA-WQ-A9G7-01 17 49071264 49071266 TTC - SPAG9 In_Frame_Del p.E753del 0.13 TCGA-WQ-A9G7-01 17 53026983 53026983 A G TOM1L1 Silent p.P429P 0.10 TCGA-WQ-A9G7-01 17 54543932 54543932 G T ANKFN1 Missense_Mutation p.Q594H 0.10 tolerated(0.19) possibly_damaging(0.804) TCGA-WQ-A9G7-01 17 56385233 56385233 G A BZRAP1 Nonsense_Mutation p.R1601* 0.21 TCGA-WQ-A9G7-01 17 56584581 56584581 A C MTMR4 Missense_Mutation p.I255M 0.29 deleterious(0) probably_damaging(1) TCGA-WQ-A9G7-01 17 61987355 61987355 T A CSHL1 Intron 0.13 TCGA-WQ-A9G7-01 17 62272409 62272409 G A TEX2 Missense_Mutation p.A564V 0.09 deleterious(0.04) benign(0.335) TCGA-WQ-A9G7-01 17 65924473 65924473 A G BPTF Silent p.K1918K 0.12 TCGA-WQ-A9G7-01 17 67029868 67029868 G A ABCA9 Silent p.P425P 0.16 TCGA-WQ-A9G7-01 17 72845978 72845978 G A GRIN2C Missense_Mutation p.T529M 0.10 deleterious(0) probably_damaging(0.998) TCGA-WQ-A9G7-01 17 7287873 7287873 C T TNK1 Silent p.L313L 0.52 TCGA-WQ-A9G7-01 17 74005326 74005326 G A EVPL Silent p.H1320H 0.22 TCGA-WQ-A9G7-01 17 74539892 74539892 A C PRCD 3'Flank 0.16 TCGA-WQ-A9G7-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.44 tolerated(0.11) benign(0.308) TCGA-WQ-A9G7-01 17 76535911 76535911 A G DNAH17 Missense_Mutation p.Y862H 0.38 possibly_damaging(0.839) TCGA-WQ-A9G7-01 17 77769341 77769341 T C CBX8 Missense_Mutation p.K88R 0.09 tolerated(0.17) possibly_damaging(0.899) TCGA-WQ-A9G7-01 17 7798461 7798461 G A CHD3 Missense_Mutation p.R558Q 0.17 possibly_damaging(0.553) TCGA-WQ-A9G7-01 17 7832645 7832645 C T KCNAB3 Missense_Mutation p.G37S 0.07 tolerated_low_confidence(0.45) benign(0.001) TCGA-WQ-A9G7-01 17 79096552 79096552 A G AATK Missense_Mutation p.L395P 0.42 deleterious(0) probably_damaging(0.999) TCGA-WQ-A9G7-01 17 79507804 79507804 G A C17orf70 3'UTR 0.24 TCGA-WQ-A9G7-01 17 79818364 79818364 G A P4HB 5'UTR 0.11 TCGA-WQ-A9G7-01 17 909329 909329 G A ABR Silent p.T857T 0.12 TCGA-WQ-A9G7-01 18 15323316 15323316 G C RNU6-721P 5'Flank 0.06 TCGA-WQ-A9G7-01 18 20716234 20716234 C A CABLES1 Missense_Mutation p.L170M 0.23 deleterious_low_confidence(0.01) benign(0.154) TCGA-WQ-A9G7-01 18 2599168 2599169 TA - NDC80 Frame_Shift_Del p.Y458Cfs*4 0.19 TCGA-WQ-A9G7-01 18 29850320 29850320 G A GAREM Silent p.N531N 0.21 TCGA-WQ-A9G7-01 18 45566490 45566490 T G ZBTB7C Missense_Mutation p.D330A 0.12 deleterious(0) probably_damaging(0.994) TCGA-WQ-A9G7-01 18 47810278 47810278 G A CXXC1 Missense_Mutation p.R471C 0.20 tolerated(0.26) possibly_damaging(0.738) TCGA-WQ-A9G7-01 18 56202553 56202554 - A ALPK2 Frame_Shift_Ins p.L1622Ffs*10 0.14 TCGA-WQ-A9G7-01 18 61254648 61254648 C T SERPINB13 5'UTR 0.21 TCGA-WQ-A9G7-01 18 67753861 67753861 A G RTTN Silent p.D1454D 0.15 TCGA-WQ-A9G7-01 18 6942222 6942222 T - LAMA1 Frame_Shift_Del p.K3028Nfs*13 0.13 TCGA-WQ-A9G7-01 18 9255558 9255559 - A ANKRD12 Frame_Shift_Ins p.I767Nfs*15 0.29 TCGA-WQ-A9G7-01 18 9584572 9584572 C T PPP4R1 Missense_Mutation p.A234T 0.04 deleterious(0.02) probably_damaging(0.933) TCGA-WQ-A9G7-01 19 10157440 10157440 G T C3P1 RNA 0.17 TCGA-WQ-A9G7-01 19 11322519 11322519 G A DOCK6 Silent p.L1562L 0.15 TCGA-WQ-A9G7-01 19 11461628 11461628 G A CCDC159 Missense_Mutation p.R124Q 0.30 tolerated(0.32) benign(0.025) TCGA-WQ-A9G7-01 19 1254383 1254384 - C MIDN Frame_Shift_Ins p.V204Gfs*99 0.12 TCGA-WQ-A9G7-01 19 14090352 14090352 T A RFX1 Missense_Mutation p.R247S 0.13 deleterious(0.01) probably_damaging(0.914) TCGA-WQ-A9G7-01 19 14593664 14593664 C - GIPC1 Frame_Shift_Del p.G42Afs*56 0.08 TCGA-WQ-A9G7-01 19 1495386 1495386 C T REEP6 Missense_Mutation p.S70L 0.15 deleterious(0) probably_damaging(0.978) TCGA-WQ-A9G7-01 19 15220714 15220714 G - SYDE1 Frame_Shift_Del p.G212Afs*129 0.15 TCGA-WQ-A9G7-01 19 17628141 17628141 G - PGLS Frame_Shift_Del p.V149Wfs*38 0.15 TCGA-WQ-A9G7-01 19 17942173 17942173 G A JAK3 Missense_Mutation p.R948C 0.06 deleterious(0) probably_damaging(1) TCGA-WQ-A9G7-01 19 18218416 18218416 G A MAST3 Missense_Mutation p.R20H 0.13 deleterious(0.02) benign(0.313) TCGA-WQ-A9G7-01 19 2138639 2138639 G A AP3D1 Silent p.N57N 0.10 TCGA-WQ-A9G7-01 19 22847747 22847747 T C ZNF492 Missense_Mutation p.C426R 0.10 deleterious(0.01) probably_damaging(0.985) TCGA-WQ-A9G7-01 19 23543832 23543832 C T ZNF91 Missense_Mutation p.R650K 0.15 tolerated(0.34) possibly_damaging(0.676) TCGA-WQ-A9G7-01 19 2813332 2813332 C - THOP1 3'UTR 0.09 TCGA-WQ-A9G7-01 19 282794 282794 C T PPAP2C Silent p.S187S 0.21 TCGA-WQ-A9G7-01 19 291369 291373 CGTCC - PPAP2C 5'Flank 0.15 TCGA-WQ-A9G7-01 19 3006585 3006585 G T TLE2 Missense_Mutation p.P445T 0.36 deleterious(0) possibly_damaging(0.845) TCGA-WQ-A9G7-01 19 30935510 30935510 C T ZNF536 Silent p.C347C 0.22 TCGA-WQ-A9G7-01 19 3121288 3121288 C T GNA11 3'UTR 0.32 TCGA-WQ-A9G7-01 19 33984227 33984227 G A PEPD Missense_Mutation p.T137M 0.05 tolerated(0.08) benign(0.017) TCGA-WQ-A9G7-01 19 34003533 34003533 C T PEPD Missense_Mutation p.R56H 0.17 tolerated(0.15) possibly_damaging(0.599) TCGA-WQ-A9G7-01 19 34685491 34685491 T A LSM14A Missense_Mutation p.V77D 0.30 deleterious(0) probably_damaging(0.967) TCGA-WQ-A9G7-01 19 36113979 36113979 C T HAUS5 3'UTR 0.11 TCGA-WQ-A9G7-01 19 3624120 3624120 G A CACTIN Nonsense_Mutation p.R70* 0.23 TCGA-WQ-A9G7-01 19 37440932 37440932 C T ZNF568 Missense_Mutation p.L293F 0.30 tolerated(0.06) probably_damaging(1) TCGA-WQ-A9G7-01 19 37643170 37643170 T C ZNF585A Missense_Mutation p.H489R 0.14 deleterious(0) probably_damaging(0.998) TCGA-WQ-A9G7-01 19 38028487 38028487 A G ZNF793 Silent p.R309R 0.18 TCGA-WQ-A9G7-01 19 38572170 38572170 C T SIPA1L3 5'UTR 0.14 TCGA-WQ-A9G7-01 19 39307754 39307754 G A ECH1 Missense_Mutation p.T180I 0.35 deleterious(0) probably_damaging(0.987) TCGA-WQ-A9G7-01 19 40392050 40392050 G A FCGBP Missense_Mutation p.A2779V 0.21 probably_damaging(0.964) TCGA-WQ-A9G7-01 19 4047674 4047674 G T ZBTB7A 3'UTR 0.22 TCGA-WQ-A9G7-01 19 42133320 42133320 G - CEACAM4 Frame_Shift_Del p.S5Qfs*15 0.27 TCGA-WQ-A9G7-01 19 42352585 42352585 C - DMRTC2 Frame_Shift_Del p.K149Rfs*87 0.15 TCGA-WQ-A9G7-01 19 42752475 42752475 T A ERF 3'UTR 0.23 TCGA-WQ-A9G7-01 19 4290532 4290532 G A SHD Missense_Mutation p.V309M 0.37 deleterious(0) probably_damaging(0.989) TCGA-WQ-A9G7-01 19 44740750 44740750 A G ZNF227 Missense_Mutation p.K723E 0.39 deleterious(0.02) probably_damaging(0.997) TCGA-WQ-A9G7-01 19 45419500 45419500 A G APOC1 Missense_Mutation p.K38E 0.14 tolerated(0.1) benign(0.002) TCGA-WQ-A9G7-01 19 46318890 46318890 T A SYMPK Silent p.G1251G 0.18 TCGA-WQ-A9G7-01 19 46387532 46387532 G - IRF2BP1 Frame_Shift_Del p.L501Cfs*10 0.14 TCGA-WQ-A9G7-01 19 464152 464152 G A ODF3L2 Missense_Mutation p.R188C 0.30 deleterious(0.01) probably_damaging(1) TCGA-WQ-A9G7-01 19 48887541 48887541 C T KDELR1 Missense_Mutation p.G184S 0.16 deleterious(0.02) probably_damaging(0.997) TCGA-WQ-A9G7-01 19 48965133 48965133 G A KCNJ14 Missense_Mutation p.R51H 0.10 deleterious(0.02) probably_damaging(0.94) TCGA-WQ-A9G7-01 19 49110275 49110275 C - SPACA4 Frame_Shift_Del p.P15Qfs*191 0.28 TCGA-WQ-A9G7-01 19 50370458 50370458 C A PNKP Missense_Mutation p.G2C 0.18 deleterious_low_confidence(0) benign(0.332) TCGA-WQ-A9G7-01 19 51329027 51329027 G T KLK15 3'UTR 0.22 TCGA-WQ-A9G7-01 19 51462437 51462437 T - KLK6 Frame_Shift_Del p.T240Pfs*10 0.16 TCGA-WQ-A9G7-01 19 52496176 52496176 G A ZNF615 Missense_Mutation p.A729V 0.16 tolerated(0.63) probably_damaging(0.937) TCGA-WQ-A9G7-01 19 52825303 52825303 T - ZNF480 Frame_Shift_Del p.F268Lfs*63 0.09 TCGA-WQ-A9G7-01 19 52877661 52877661 C A ZNF880 Nonsense_Mutation p.C83* 0.20 TCGA-WQ-A9G7-01 19 52919436 52919436 C T ZNF528 Missense_Mutation p.T444I 0.12 deleterious(0) possibly_damaging(0.544) TCGA-WQ-A9G7-01 19 52941014 52941014 G A ZNF534 Missense_Mutation p.G114R 0.32 tolerated(0.08) benign(0.316) TCGA-WQ-A9G7-01 19 54377623 54377623 C T MYADM Silent p.S280S 0.16 TCGA-WQ-A9G7-01 19 54406355 54406355 C T PRKCG Missense_Mutation p.S535F 0.33 deleterious(0) probably_damaging(0.994) TCGA-WQ-A9G7-01 19 54965734 54965734 G A LENG8 Silent p.Q184Q 0.23 TCGA-WQ-A9G7-01 19 55676758 55676758 G A DNAAF3 Missense_Mutation p.P169L 0.10 tolerated(0.07) possibly_damaging(0.54) TCGA-WQ-A9G7-01 19 5778650 5778650 G A CATSPERD Missense_Mutation p.R787H 0.18 tolerated_low_confidence(0.27) benign(0.003) TCGA-WQ-A9G7-01 19 6375770 6375770 C T PSPN Missense_Mutation p.V31M 0.20 tolerated(0.09) benign(0.034) TCGA-WQ-A9G7-01 19 7524856 7524856 G A ARHGEF18 Missense_Mutation p.A622T 0.06 tolerated(0.12) benign(0.059) TCGA-WQ-A9G7-01 19 7676008 7676008 G A CAMSAP3 Silent p.P386P 0.09 TCGA-WQ-A9G7-01 19 7687478 7687478 A G XAB2 Missense_Mutation p.Y481H 0.14 tolerated(1) benign(0.016) TCGA-WQ-A9G7-01 19 8145942 8145942 G A FBN3 Silent p.G2466G 0.16 TCGA-WQ-A9G7-01 19 9324680 9324680 G A OR7D4 Silent p.Y278Y 0.39 TCGA-WQ-A9G7-01 1 100889837 100889837 C - CDC14A Frame_Shift_Del p.Y126Ifs*64 0.27 TCGA-WQ-A9G7-01 1 111773538 111773538 A G CHI3L2 Missense_Mutation p.Y82C 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-WQ-A9G7-01 1 117057196 117057196 A G CD58 3'UTR 0.07 TCGA-WQ-A9G7-01 1 118539117 118539117 A - SPAG17 Frame_Shift_Del p.F1643Lfs*18 0.11 TCGA-WQ-A9G7-01 1 120057162 120057162 C T HSD3B1 Missense_Mutation p.A339V 0.52 deleterious(0.01) benign(0.012) TCGA-WQ-A9G7-01 1 120298061 120298061 C T HMGCS2 Silent p.S392S 0.17 TCGA-WQ-A9G7-01 1 144882534 144882534 T C PDE4DIP Missense_Mutation p.H1162R 0.08 tolerated(0.55) benign(0.003) TCGA-WQ-A9G7-01 1 144917885 144917885 A G PDE4DIP Silent p.L467L 0.04 TCGA-WQ-A9G7-01 1 149877320 149877320 A G SV2A Intron 0.33 TCGA-WQ-A9G7-01 1 150131092 150131092 T G PLEKHO1 Missense_Mutation p.S202A 0.17 tolerated(0.22) benign(0.214) TCGA-WQ-A9G7-01 1 150234003 150234003 C A CA14 Silent p.T74T 0.05 TCGA-WQ-A9G7-01 1 150444476 150444476 C T RPRD2 Missense_Mutation p.R1018C 0.11 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-WQ-A9G7-01 1 152732288 152732288 A G KPRP Missense_Mutation p.Q75R 0.19 deleterious_low_confidence(0.01) benign(0.268) TCGA-WQ-A9G7-01 1 152882316 152882316 C A IVL Missense_Mutation p.L15I 0.20 deleterious_low_confidence(0.04) unknown(0) TCGA-WQ-A9G7-01 1 153744418 153744418 G A INTS3 Missense_Mutation p.S900N 0.10 tolerated(0.25) benign(0.001) TCGA-WQ-A9G7-01 1 153747867 153747869 AGG - SLC27A3 In_Frame_Del p.E13del 0.12 TCGA-WQ-A9G7-01 1 153750796 153750796 C T SLC27A3 Missense_Mutation p.R488W 0.11 deleterious(0) possibly_damaging(0.862) TCGA-WQ-A9G7-01 1 154942720 154942720 C T SHC1 Missense_Mutation p.V95I 0.11 tolerated(0.34) benign(0.019) TCGA-WQ-A9G7-01 1 15541785 15541785 G A TMEM51 Missense_Mutation p.V68M 0.11 deleterious(0) probably_damaging(1) TCGA-WQ-A9G7-01 1 155922509 155922509 C T ARHGEF2 Missense_Mutation p.A632T 0.18 tolerated(0.61) benign(0) TCGA-WQ-A9G7-01 1 1565676 1565676 C T MIB2 Silent p.G993G 0.30 TCGA-WQ-A9G7-01 1 156640020 156640020 C T NES Silent p.R1320R 0.06 TCGA-WQ-A9G7-01 1 156642804 156642804 G - NES Frame_Shift_Del p.T393Hfs*9 0.23 TCGA-WQ-A9G7-01 1 156911758 156911758 G A ARHGEF11 Missense_Mutation p.A1117V 0.23 deleterious(0.01) probably_damaging(0.948) TCGA-WQ-A9G7-01 1 159033322 159033322 T - AIM2 Frame_Shift_Del p.N320Mfs*7 0.23 TCGA-WQ-A9G7-01 1 159901663 159901663 C T IGSF9 Missense_Mutation p.R434Q 0.26 deleterious(0.01) possibly_damaging(0.849) TCGA-WQ-A9G7-01 1 160062224 160062224 C T IGSF8 Missense_Mutation p.R525Q 0.29 tolerated(0.84) benign(0.115) TCGA-WQ-A9G7-01 1 161130285 161130285 G T USP21 5'UTR 0.07 TCGA-WQ-A9G7-01 1 161188700 161188700 C T FCER1G Silent p.Y76Y 0.14 TCGA-WQ-A9G7-01 1 16255142 16255143 GA - SPEN Frame_Shift_Del p.R806Tfs*14 0.39 TCGA-WQ-A9G7-01 1 166890453 166890453 G A ILDR2 Missense_Mutation p.R459C 0.37 deleterious(0) possibly_damaging(0.694) TCGA-WQ-A9G7-01 1 168169417 168169418 - A TIPRL 3'UTR 0.33 TCGA-WQ-A9G7-01 1 168216311 168216312 - T SFT2D2 3'UTR 0.24 TCGA-WQ-A9G7-01 1 16945351 16945353 AGG - RP5-1182A14.5 3'Flank 0.11 TCGA-WQ-A9G7-01 1 176926868 176926868 G A ASTN1 Silent p.C611C 0.12 TCGA-WQ-A9G7-01 1 177902746 177902746 C T SEC16B Missense_Mutation p.S866N 0.17 tolerated(0.27) benign(0.002) TCGA-WQ-A9G7-01 1 179054904 179054904 G A TOR3A Missense_Mutation p.G172D 0.33 deleterious(0) probably_damaging(1) TCGA-WQ-A9G7-01 1 179609580 179609580 G T TDRD5 Missense_Mutation p.E600D 0.11 deleterious(0.04) benign(0.236) TCGA-WQ-A9G7-01 1 186076037 186076037 A G HMCN1 Missense_Mutation p.T3598A 0.15 probably_damaging(0.994) TCGA-WQ-A9G7-01 1 186135392 186135392 C A HMCN1 Nonsense_Mutation p.C5132* 0.08 TCGA-WQ-A9G7-01 1 196274397 196274397 G T KCNT2 Missense_Mutation p.D854E 0.06 deleterious(0.02) benign(0.138) TCGA-WQ-A9G7-01 1 197704811 197704811 G A DENND1B Intron 0.19 TCGA-WQ-A9G7-01 1 200586864 200586864 C T KIF14 Missense_Mutation p.A330T 0.13 tolerated(0.59) benign(0.067) TCGA-WQ-A9G7-01 1 201982384 201982385 AA - ELF3 Frame_Shift_Del p.K255Rfs*45 0.10 TCGA-WQ-A9G7-01 1 205813295 205813295 G A PM20D1 Silent p.G209G 0.33 TCGA-WQ-A9G7-01 1 206634603 206634603 C T SRGAP2 Silent p.I932I 0.28 TCGA-WQ-A9G7-01 1 207495135 207495135 C T CD55 Missense_Mutation p.P9S 0.12 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-WQ-A9G7-01 1 207812779 207812779 A G CR1 3'Flank 0.16 TCGA-WQ-A9G7-01 1 214822084 214822084 G A CENPF Missense_Mutation p.A2633T 0.23 benign(0.002) TCGA-WQ-A9G7-01 1 216062118 216062118 C - USH2A Frame_Shift_Del p.E2625Kfs*16 0.11 TCGA-WQ-A9G7-01 1 217784290 217784290 G T GPATCH2 Missense_Mutation p.P320H 0.12 deleterious(0) probably_damaging(0.999) TCGA-WQ-A9G7-01 1 220330778 220330778 G A RAB3GAP2 Missense_Mutation p.A1130V 0.15 tolerated(1) benign(0.049) TCGA-WQ-A9G7-01 1 222721145 222721145 C T HHIPL2 Missense_Mutation p.R81Q 0.09 tolerated(0.09) benign(0.319) TCGA-WQ-A9G7-01 1 222898866 222898866 C T BROX Silent p.Y183Y 0.10 TCGA-WQ-A9G7-01 1 226570848 226570848 C T PARP1 Missense_Mutation p.V350I 0.13 tolerated(0.39) benign(0) TCGA-WQ-A9G7-01 1 228547615 228547615 C T OBSCN Intron 0.12 TCGA-WQ-A9G7-01 1 229666151 229666151 C A ABCB10 Silent p.G480G 0.16 TCGA-WQ-A9G7-01 1 231488894 231488894 T - SPRTN Frame_Shift_Del p.F421Lfs*7 0.18 TCGA-WQ-A9G7-01 1 240492397 240492397 G A FMN2 Missense_Mutation p.E1413K 0.10 possibly_damaging(0.667) TCGA-WQ-A9G7-01 1 245866042 245866042 C T KIF26B 3'UTR 0.48 TCGA-WQ-A9G7-01 1 247024553 247024553 T - AHCTF1 Frame_Shift_Del p.K1269Nfs*11 0.09 TCGA-WQ-A9G7-01 1 248525091 248525091 C T OR2T4 Missense_Mutation p.A70V 0.12 deleterious(0.01) benign(0.337) TCGA-WQ-A9G7-01 1 25571731 25571731 G A C1orf63 Silent p.N194N 0.10 TCGA-WQ-A9G7-01 1 27278369 27278369 C T C1orf172 Missense_Mutation p.G168D 0.47 deleterious(0.02) probably_damaging(0.961) TCGA-WQ-A9G7-01 1 27440501 27440501 G A SLC9A1 Missense_Mutation p.A210V 0.27 deleterious(0.05) possibly_damaging(0.857) TCGA-WQ-A9G7-01 1 32202242 32202242 G A BAI2 Missense_Mutation p.S1021F 0.07 deleterious(0) probably_damaging(0.999) TCGA-WQ-A9G7-01 1 47905855 47905855 C T FOXD2 3'UTR 0.07 TCGA-WQ-A9G7-01 1 54269665 54269665 G T NDC1 Missense_Mutation p.D334E 0.34 deleterious(0) probably_damaging(1) TCGA-WQ-A9G7-01 1 55081819 55081819 C T FAM151A Missense_Mutation p.V97I 0.07 tolerated(0.11) possibly_damaging(0.448) TCGA-WQ-A9G7-01 1 59247677 59247678 - A JUN 3'UTR 0.29 TCGA-WQ-A9G7-01 1 59247776 59247776 T C JUN Missense_Mutation p.M323V 0.36 deleterious(0.02) benign(0.042) TCGA-WQ-A9G7-01 1 60506733 60506733 C A C1orf87 Missense_Mutation p.G138V 0.45 deleterious(0.01) possibly_damaging(0.733) TCGA-WQ-A9G7-01 1 67852322 67852322 G A IL12RB2 Missense_Mutation p.G639D 0.42 deleterious(0) possibly_damaging(0.891) TCGA-WQ-A9G7-01 1 68948426 68948427 - T DEPDC1 Frame_Shift_Ins p.N355Kfs*9 0.29 TCGA-WQ-A9G7-01 1 7887311 7887311 C T PER3 Silent p.N766N 0.20 TCGA-WQ-A9G7-01 1 85018999 85018999 T - CTBS 3'UTR 0.12 TCGA-WQ-A9G7-01 1 87563588 87563588 C A HS2ST1 Missense_Mutation p.P219Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-WQ-A9G7-01 1 89476691 89476693 CTT - GBP3 In_Frame_Del p.E419del 0.48 TCGA-WQ-A9G7-01 1 89615112 89615112 C T GBP7 Missense_Mutation p.A339T 0.07 tolerated(0.14) benign(0.26) TCGA-WQ-A9G7-01 1 90400489 90400498 ACGGCACTAA - LRRC8D Frame_Shift_Del p.G622Sfs*4 0.13 TCGA-WQ-A9G7-01 1 91182580 91182580 A G BARHL2 Missense_Mutation p.V58A 0.09 tolerated_low_confidence(1) probably_damaging(0.956) TCGA-WQ-A9G7-01 1 91985737 91985737 C T CDC7 Nonsense_Mutation p.R411* 0.19 TCGA-WQ-A9G7-01 1 92430235 92430235 C T BRDT Missense_Mutation p.R82C 0.30 deleterious(0) probably_damaging(0.998) TCGA-WQ-A9G7-01 20 23017003 23017003 G A SSTR4 Missense_Mutation p.V295M 0.21 deleterious(0.03) benign(0.206) TCGA-WQ-A9G7-01 20 23065156 23065156 G T CD93 Silent p.P558P 0.16 TCGA-WQ-A9G7-01 20 256674 256674 C T C20orf96 Silent p.E322E 0.44 TCGA-WQ-A9G7-01 20 31238388 31238388 G A C20orf203 RNA 0.30 TCGA-WQ-A9G7-01 20 33519901 33519901 A G GSS Silent p.H290H 0.14 TCGA-WQ-A9G7-01 20 35521429 35521429 T - SAMHD1 Frame_Shift_Del p.K596Rfs*35 0.22 TCGA-WQ-A9G7-01 20 36147590 36147590 C T BLCAP 5'UTR 0.39 TCGA-WQ-A9G7-01 20 3766272 3766272 C T CENPB Missense_Mutation p.A287T 0.06 tolerated(0.26) unknown(0) TCGA-WQ-A9G7-01 20 42271226 42271226 G A IFT52 Missense_Mutation p.V410I 0.12 tolerated(1) benign(0.001) TCGA-WQ-A9G7-01 20 44527172 44527172 C A CTSA 3'UTR 0.33 TCGA-WQ-A9G7-01 20 4706009 4706009 C T PRND 3'UTR 0.29 TCGA-WQ-A9G7-01 20 49225478 49225478 C T FAM65C Missense_Mutation p.A215T 0.20 deleterious(0) probably_damaging(1) TCGA-WQ-A9G7-01 20 52193651 52193651 C T ZNF217 Missense_Mutation p.S551N 0.30 deleterious(0.04) benign(0.013) TCGA-WQ-A9G7-01 20 5294612 5294612 C T PROKR2 Missense_Mutation p.R135H 0.14 deleterious(0.04) probably_damaging(0.987) TCGA-WQ-A9G7-01 20 60888755 60888755 G A LAMA5 Missense_Mutation p.R2870W 0.10 benign(0.272) TCGA-WQ-A9G7-01 20 61917759 61917760 - T ARFGAP1 Frame_Shift_Ins p.S303Ffs*42 0.22 TCGA-WQ-A9G7-01 20 62172859 62172859 C T SRMS Missense_Mutation p.R354Q 0.20 deleterious(0) probably_damaging(0.99) TCGA-WQ-A9G7-01 20 62328389 62328389 A G TNFRSF6B Missense_Mutation p.Y90C 0.14 deleterious(0) probably_damaging(0.997) TCGA-WQ-A9G7-01 20 62493729 62493729 C T ABHD16B Missense_Mutation p.A279V 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-WQ-A9G7-01 21 27945475 27945475 C T CYYR1 5'UTR 0.31 TCGA-WQ-A9G7-01 21 31744329 31744329 G A KRTAP13-2 Missense_Mutation p.T68M 0.19 tolerated(0.06) benign(0.149) TCGA-WQ-A9G7-01 21 38128905 38128906 TT - HLCS Frame_Shift_Del p.K649Rfs*99 0.26 TCGA-WQ-A9G7-01 21 43795963 43795963 C - TMPRSS3 Frame_Shift_Del p.L405Wfs*11 0.13 TCGA-WQ-A9G7-01 21 45750586 45750586 T C C21orf2 Silent p.S253S 0.21 TCGA-WQ-A9G7-01 21 46713373 46713373 C T LINC00205 RNA 0.07 TCGA-WQ-A9G7-01 21 46951806 46951806 T C SLC19A1 Missense_Mutation p.Y149C 0.09 deleterious(0) probably_damaging(0.992) TCGA-WQ-A9G7-01 21 47552145 47552147 CTT - COL6A2 In_Frame_Del p.F914del 0.10 TCGA-WQ-A9G7-01 22 18561184 18561184 G A PEX26 Silent p.G14G 0.38 TCGA-WQ-A9G7-01 22 19344473 19344473 G A HIRA Missense_Mutation p.T779I 0.09 tolerated(0.39) benign(0.328) TCGA-WQ-A9G7-01 22 21343966 21344002 GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA - LZTR1 Splice_Site p.X217_splice 0.30 TCGA-WQ-A9G7-01 22 23406095 23406095 G A RTDR1 Missense_Mutation p.A213V 0.36 tolerated(0.97) benign(0.131) TCGA-WQ-A9G7-01 22 24059430 24059430 C T KB-1572G7.2 RNA 0.26 TCGA-WQ-A9G7-01 22 26159258 26159258 C A MYO18B Missense_Mutation p.P34T 0.17 deleterious(0) probably_damaging(1) TCGA-WQ-A9G7-01 22 30069387 30069387 C T NF2 Missense_Mutation p.R418C 0.13 deleterious(0) possibly_damaging(0.901) TCGA-WQ-A9G7-01 22 30857443 30857443 G A SEC14L3 Missense_Mutation p.A312V 0.21 tolerated(0.09) benign(0.01) TCGA-WQ-A9G7-01 22 33255323 33255323 G C TIMP3 Missense_Mutation p.A199P 0.38 tolerated(0.16) possibly_damaging(0.598) TCGA-WQ-A9G7-01 22 36960273 36960274 - T CACNG2 3'UTR 0.30 TCGA-WQ-A9G7-01 22 36960548 36960548 G A CACNG2 Silent p.S274S 0.16 TCGA-WQ-A9G7-01 22 37904630 37904630 A G CARD10 Silent p.H323H 0.33 TCGA-WQ-A9G7-01 22 37964226 37964226 C T CDC42EP1 Missense_Mutation p.S192F 0.23 deleterious(0) benign(0.184) TCGA-WQ-A9G7-01 22 38130772 38130773 - G TRIOBP Frame_Shift_Ins p.T1480Hfs*22 0.15 TCGA-WQ-A9G7-01 22 39482298 39482298 C T APOBEC3G Silent p.H250H 0.17 TCGA-WQ-A9G7-01 22 44168976 44168976 A G EFCAB6 Silent p.A49A 0.12 TCGA-WQ-A9G7-01 22 46859827 46859827 G A CELSR1 Silent p.S1320S 0.32 TCGA-WQ-A9G7-01 22 50879410 50879410 C - PPP6R2 Frame_Shift_Del p.P821Rfs*23 0.20 TCGA-WQ-A9G7-01 2 100289003 100289003 T A AFF3 Missense_Mutation p.E405D 0.11 tolerated(0.29) benign(0.009) TCGA-WQ-A9G7-01 2 105924248 105924248 G C TGFBRAP1 Missense_Mutation p.L171V 0.26 tolerated(0.64) benign(0.006) TCGA-WQ-A9G7-01 2 108881280 108881280 G T SULT1C3 Splice_Site p.X208_splice 0.09 TCGA-WQ-A9G7-01 2 110049067 110049067 C T SH3RF3 Missense_Mutation p.A505V 0.09 deleterious(0) benign(0.01) TCGA-WQ-A9G7-01 2 113418726 113418726 A G SLC20A1 Missense_Mutation p.S601G 0.11 deleterious(0.02) benign(0.269) TCGA-WQ-A9G7-01 2 120199162 120199162 G A SCTR Missense_Mutation p.A385V 0.34 deleterious(0.02) possibly_damaging(0.871) TCGA-WQ-A9G7-01 2 120836150 120836150 T - EPB41L5 Frame_Shift_Del p.W268Gfs*4 0.23 TCGA-WQ-A9G7-01 2 1271240 1271240 G A SNTG2 Missense_Mutation p.G394D 0.11 tolerated(0.16) possibly_damaging(0.78) TCGA-WQ-A9G7-01 2 135470783 135470783 C T TMEM163 Silent p.A103A 0.15 TCGA-WQ-A9G7-01 2 135985392 135985392 C G ZRANB3 Missense_Mutation p.Q716H 0.14 tolerated(0.06) benign(0.014) TCGA-WQ-A9G7-01 2 141299487 141299487 A T LRP1B Missense_Mutation p.N2416K 0.19 benign(0.403) TCGA-WQ-A9G7-01 2 141709436 141709436 G A LRP1B Silent p.C987C 0.12 TCGA-WQ-A9G7-01 2 166032889 166032889 A G SCN3A Silent p.L6L 0.46 TCGA-WQ-A9G7-01 2 170033019 170033019 G A LRP2 Silent p.C3491C 0.05 TCGA-WQ-A9G7-01 2 177037011 177037011 G A HOXD3 3'UTR 0.18 TCGA-WQ-A9G7-01 2 179396488 179396488 T C TTN Missense_Mutation p.R34952G 0.17 TCGA-WQ-A9G7-01 2 179588283 179588283 G A TTN Missense_Mutation p.R7182W 0.17 TCGA-WQ-A9G7-01 2 201722550 201722550 A - CLK1 Frame_Shift_Del p.F283Lfs*36 0.16 TCGA-WQ-A9G7-01 2 202622187 202622187 A G ALS2 Missense_Mutation p.I470T 0.13 deleterious(0.01) benign(0.367) TCGA-WQ-A9G7-01 2 211081128 211081129 - G ACADL Frame_Shift_Ins p.Q160Pfs*21 0.12 TCGA-WQ-A9G7-01 2 21231146 21231146 T - APOB Frame_Shift_Del p.N2865Ifs*9 0.12 TCGA-WQ-A9G7-01 2 219553477 219553477 A T STK36 Missense_Mutation p.S480C 0.27 tolerated(0.16) benign(0.021) TCGA-WQ-A9G7-01 2 219745715 219745715 G A WNT10A 5'UTR 0.09 TCGA-WQ-A9G7-01 2 220136240 220136240 G A TUBA4B RNA 0.12 TCGA-WQ-A9G7-01 2 220313610 220313610 C T SPEG Missense_Mutation p.A577V 0.31 benign(0.002) TCGA-WQ-A9G7-01 2 220435528 220435528 C - OBSL1 Frame_Shift_Del p.A143Rfs*5 0.14 TCGA-WQ-A9G7-01 2 231033882 231033882 A G SP110 Silent p.G700G 0.16 TCGA-WQ-A9G7-01 2 231738183 231738183 G A ITM2C Missense_Mutation p.V58M 0.32 tolerated(0.25) benign(0.008) TCGA-WQ-A9G7-01 2 232458491 232458491 A G C2orf57 Missense_Mutation p.T277A 0.06 deleterious(0.01) possibly_damaging(0.801) TCGA-WQ-A9G7-01 2 234428302 234428302 G A USP40 Nonsense_Mutation p.R792* 0.29 TCGA-WQ-A9G7-01 2 237032957 237032957 G A AGAP1 3'UTR 0.35 TCGA-WQ-A9G7-01 2 239006944 239006946 TCG - SCLY In_Frame_Del p.V439del 0.08 TCGA-WQ-A9G7-01 2 239039675 239039675 C T ESPNL Missense_Mutation p.R774W 0.22 deleterious(0.03) benign(0.023) TCGA-WQ-A9G7-01 2 240056341 240056341 T C HDAC4 Splice_Site p.X327_splice 0.14 TCGA-WQ-A9G7-01 2 240969782 240969782 C T OR6B2 Missense_Mutation p.G22E 0.30 tolerated(1) benign(0.001) TCGA-WQ-A9G7-01 2 24253600 24253600 C T C2orf44 3'UTR 0.16 TCGA-WQ-A9G7-01 2 26435330 26435330 A T HADHA Intron 0.30 TCGA-WQ-A9G7-01 2 27454347 27454347 G A CAD Missense_Mutation p.G767S 0.36 tolerated(0.8) benign(0) TCGA-WQ-A9G7-01 2 30142910 30142910 C T ALK Missense_Mutation p.A206T 0.07 tolerated_low_confidence(0.06) benign(0.002) TCGA-WQ-A9G7-01 2 3392013 3392013 A G TRAPPC12 Missense_Mutation p.S207G 0.06 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-WQ-A9G7-01 2 37449694 37449694 C T CEBPZ Missense_Mutation p.E632K 0.15 deleterious(0.05) probably_damaging(0.986) TCGA-WQ-A9G7-01 2 40656189 40656191 AAG - SLC8A1 In_Frame_Del p.F411del 0.12 TCGA-WQ-A9G7-01 2 45829136 45829136 G T SRBD1 Missense_Mutation p.P56H 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.503) TCGA-WQ-A9G7-01 2 68521038 68521038 C T CNRIP1 Missense_Mutation p.E151K 0.13 deleterious(0) possibly_damaging(0.871) TCGA-WQ-A9G7-01 2 70188363 70188363 A G ASPRV1 Missense_Mutation p.L153P 0.15 deleterious(0) probably_damaging(0.998) TCGA-WQ-A9G7-01 2 71377061 71377061 A - MPHOSPH10 Frame_Shift_Del p.M656Cfs*24 0.24 TCGA-WQ-A9G7-01 2 74902504 74902504 G A SEMA4F Silent p.L455L 0.15 TCGA-WQ-A9G7-01 2 79386545 79386545 T C REG3A 5'UTR 0.13 TCGA-WQ-A9G7-01 2 80136906 80136906 A G CTNNA2 Missense_Mutation p.S347G 0.16 tolerated(0.16) possibly_damaging(0.465) TCGA-WQ-A9G7-01 2 84806683 84806684 - A DNAH6 Frame_Shift_Ins p.V706Sfs*7 0.19 TCGA-WQ-A9G7-01 2 90249341 90249341 C T IGKV1D-43 Silent p.S99S 0.14 TCGA-WQ-A9G7-01 2 96781723 96781723 C T ADRA2B Missense_Mutation p.A56T 0.16 tolerated(0.16) probably_damaging(0.967) TCGA-WQ-A9G7-01 3 101484092 101484092 C T CEP97 Silent p.N765N 0.08 TCGA-WQ-A9G7-01 3 10312434 10312434 G A TATDN2 Missense_Mutation p.S523N 0.25 tolerated(0.16) benign(0.168) TCGA-WQ-A9G7-01 3 126180881 126180881 C T ZXDC Missense_Mutation p.V542I 0.05 deleterious(0.01) probably_damaging(0.994) TCGA-WQ-A9G7-01 3 126261099 126261099 C T CHST13 Missense_Mutation p.P235L 0.18 deleterious(0) probably_damaging(0.999) TCGA-WQ-A9G7-01 3 127395229 127395229 C G ABTB1 Missense_Mutation p.D145E 0.29 tolerated(1) benign(0.006) TCGA-WQ-A9G7-01 3 136240141 136240143 TCA - STAG1 In_Frame_Del p.D196del 0.13 TCGA-WQ-A9G7-01 3 142681759 142681759 G A PAQR9 Silent p.H140H 0.20 TCGA-WQ-A9G7-01 3 148925301 148925301 G A CP Silent p.H295H 0.15 TCGA-WQ-A9G7-01 3 152164531 152164531 G T MBNL1 Missense_Mutation p.E282D 0.22 tolerated(0.55) probably_damaging(0.995) TCGA-WQ-A9G7-01 3 15455608 15455608 A C METTL6 Missense_Mutation p.L198R 0.17 deleterious(0) possibly_damaging(0.792) TCGA-WQ-A9G7-01 3 155198960 155198960 T C PLCH1 Missense_Mutation p.N1627D 0.18 deleterious_low_confidence(0) possibly_damaging(0.69) TCGA-WQ-A9G7-01 3 156763604 156763604 A G LEKR1 3'UTR 0.40 TCGA-WQ-A9G7-01 3 167000188 167000188 T C ZBBX Missense_Mutation p.R698G 0.14 deleterious(0) possibly_damaging(0.736) TCGA-WQ-A9G7-01 3 169656232 169656233 - T SAMD7 Frame_Shift_Ins p.C429Lfs*9 0.23 TCGA-WQ-A9G7-01 3 179294051 179294051 A G ACTL6A Missense_Mutation p.T175A 0.21 tolerated(0.08) benign(0.26) TCGA-WQ-A9G7-01 3 179336273 179336273 C T NDUFB5 Missense_Mutation p.A138V 0.15 deleterious(0.01) possibly_damaging(0.493) TCGA-WQ-A9G7-01 3 182631716 182631716 C T ATP11B Missense_Mutation p.A1129V 0.37 tolerated_low_confidence(0.17) benign(0.049) TCGA-WQ-A9G7-01 3 184105204 184105204 C T CHRD Missense_Mutation p.T797M 0.29 deleterious(0) probably_damaging(0.976) TCGA-WQ-A9G7-01 3 185797806 185797806 A G ETV5 Silent p.F150F 0.12 TCGA-WQ-A9G7-01 3 190575656 190575656 T C GMNC Silent p.E100E 0.13 TCGA-WQ-A9G7-01 3 195391091 195391091 C T SDHAP2 RNA 0.30 TCGA-WQ-A9G7-01 3 195802216 195802216 A G TFRC Silent p.L18L 0.09 TCGA-WQ-A9G7-01 3 46400760 46400760 C A CCR2 Intron 0.10 TCGA-WQ-A9G7-01 3 46751508 46751508 C T TMIE 3'UTR 0.50 TCGA-WQ-A9G7-01 3 48732056 48732056 G A IP6K2 Intron 0.60 TCGA-WQ-A9G7-01 3 49833197 49833197 G A CDHR4 Silent p.L237L 0.50 TCGA-WQ-A9G7-01 3 50326695 50326695 C A IFRD2 Silent p.R356R 0.54 TCGA-WQ-A9G7-01 3 52384527 52384527 C T DNAH1 Missense_Mutation p.R884W 0.12 possibly_damaging(0.676) TCGA-WQ-A9G7-01 3 52437802 52437803 TT - BAP1 Frame_Shift_Del p.K453Rfs*15 0.32 TCGA-WQ-A9G7-01 3 97487017 97487017 C T ARL6 Silent p.C22C 0.39 TCGA-WQ-A9G7-01 3 97661976 97661976 G A MINA 3'UTR 0.21 TCGA-WQ-A9G7-01 3 97726614 97726614 T C GABRR3 Intron 0.20 TCGA-WQ-A9G7-01 3 97869067 97869067 G T OR5H14 Missense_Mutation p.V280F 0.11 deleterious(0) possibly_damaging(0.9) TCGA-WQ-A9G7-01 4 109858999 109858999 C A COL25A1 Missense_Mutation p.G225C 0.06 deleterious(0) unknown(0) TCGA-WQ-A9G7-01 4 119234422 119234422 A G PRSS12 Missense_Mutation p.C475R 0.08 deleterious(0) probably_damaging(0.999) TCGA-WQ-A9G7-01 4 123302243 123302243 A G ADAD1 Missense_Mutation p.Y90C 0.03 deleterious(0.02) probably_damaging(0.995) TCGA-WQ-A9G7-01 4 124323492 124323492 C T SPRY1 Missense_Mutation p.S249L 0.25 deleterious(0) possibly_damaging(0.666) TCGA-WQ-A9G7-01 4 146030397 146030397 A G ABCE1 Missense_Mutation p.Y134C 0.54 deleterious(0) possibly_damaging(0.841) TCGA-WQ-A9G7-01 4 152498659 152498659 T C FAM160A1 Missense_Mutation p.S55P 0.18 tolerated(0.51) possibly_damaging(0.447) TCGA-WQ-A9G7-01 4 164271886 164271886 A G NPY5R Missense_Mutation p.N154S 0.08 tolerated(0.62) benign(0.438) TCGA-WQ-A9G7-01 4 1730308 1730308 C - TACC3 Frame_Shift_Del p.M396Cfs*65 0.22 TCGA-WQ-A9G7-01 4 17910804 17910804 T C LCORL Missense_Mutation p.N199D 0.26 tolerated(0.11) benign(0.039) TCGA-WQ-A9G7-01 4 183609359 183609359 G - TENM3 Frame_Shift_Del p.T695Rfs*81 0.23 TCGA-WQ-A9G7-01 4 24578249 24578249 G A DHX15 Nonsense_Mutation p.R42* 0.28 TCGA-WQ-A9G7-01 4 2910332 2910332 G A ADD1 Splice_Site p.X566_splice 0.26 TCGA-WQ-A9G7-01 4 3162106 3162106 A G HTT Missense_Mutation p.Q1284R 0.24 benign(0.098) TCGA-WQ-A9G7-01 4 3444865 3444865 C T HGFAC Silent p.H129H 0.25 TCGA-WQ-A9G7-01 4 38829083 38829083 A G TLR6 Missense_Mutation p.I671T 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-WQ-A9G7-01 4 39448060 39448060 C T KLB Nonsense_Mutation p.R572* 0.26 TCGA-WQ-A9G7-01 4 39478860 39478860 T A LIAS 3'UTR 0.25 TCGA-WQ-A9G7-01 4 57180817 57180817 C T KIAA1211 Silent p.P383P 0.46 TCGA-WQ-A9G7-01 4 57269502 57269502 C T PPAT Silent p.A156A 0.20 TCGA-WQ-A9G7-01 4 6865898 6865898 A G KIAA0232 Silent p.G1263G 0.10 TCGA-WQ-A9G7-01 4 71702012 71702012 A G GRSF1 Missense_Mutation p.L126P 0.20 tolerated(0.06) possibly_damaging(0.758) TCGA-WQ-A9G7-01 4 959783 959783 G A DGKQ Silent p.G504G 0.29 TCGA-WQ-A9G7-01 4 985227 985227 C T SLC26A1 Missense_Mutation p.A89T 0.10 deleterious(0) probably_damaging(1) TCGA-WQ-A9G7-01 4 996691 996691 T G IDUA Missense_Mutation p.V454G 0.05 tolerated(0.41) benign(0.345) TCGA-WQ-A9G7-01 5 110456746 110456746 T C WDR36 Silent p.Y741Y 0.23 TCGA-WQ-A9G7-01 5 121187928 121187928 G A FTMT Silent p.A90A 0.26 TCGA-WQ-A9G7-01 5 129039961 129039961 T C ADAMTS19 Silent p.R1057R 0.11 TCGA-WQ-A9G7-01 5 132052119 132052119 C T KIF3A Missense_Mutation p.A258T 0.06 tolerated(0.17) benign(0.008) TCGA-WQ-A9G7-01 5 133311575 133311575 T C VDAC1 Missense_Mutation p.D230G 0.13 tolerated(0.07) possibly_damaging(0.682) TCGA-WQ-A9G7-01 5 140049100 140049100 G A WDR55 Missense_Mutation p.R338H 0.11 deleterious(0.05) possibly_damaging(0.899) TCGA-WQ-A9G7-01 5 140625888 140625888 G A PCDHB15 Missense_Mutation p.E248K 0.28 tolerated_low_confidence(0.2) benign(0.007) TCGA-WQ-A9G7-01 5 148929723 148929723 A G CSNK1A1 Missense_Mutation p.S49P 0.14 tolerated_low_confidence(0.18) benign(0.036) TCGA-WQ-A9G7-01 5 149206386 149206386 C - PPARGC1B Frame_Shift_Del p.S137Afs*69 0.21 TCGA-WQ-A9G7-01 5 149219652 149219652 C T PPARGC1B Silent p.H889H 0.26 TCGA-WQ-A9G7-01 5 149262997 149262997 G A PDE6A Silent p.I710I 0.31 TCGA-WQ-A9G7-01 5 149375920 149375920 A G TIGD6 5'UTR 0.16 TCGA-WQ-A9G7-01 5 160721418 160721418 G A GABRB2 Silent p.N403N 0.14 TCGA-WQ-A9G7-01 5 162869465 162869465 A C CCNG1 Missense_Mutation p.N261T 0.22 deleterious(0.03) benign(0.009) TCGA-WQ-A9G7-01 5 162944539 162944539 A G MAT2B Intron 0.30 TCGA-WQ-A9G7-01 5 167626887 167626887 G A TENM2 Missense_Mutation p.E1061K 0.13 tolerated(0.76) benign(0.016) TCGA-WQ-A9G7-01 5 17275523 17275523 C T BASP1 Silent p.A66A 0.31 TCGA-WQ-A9G7-01 5 176518089 176518089 G A FGFR4 Missense_Mutation p.R196H 0.26 deleterious(0) probably_damaging(1) TCGA-WQ-A9G7-01 5 176916601 176916601 C T PDLIM7 Missense_Mutation p.R221H 0.33 deleterious(0.03) benign(0.165) TCGA-WQ-A9G7-01 5 177548875 177548875 A G N4BP3 Missense_Mutation p.Y503C 0.11 deleterious(0) probably_damaging(0.999) TCGA-WQ-A9G7-01 5 177669109 177669109 G C COL23A1 Silent p.G505G 0.33 TCGA-WQ-A9G7-01 5 2752825 2752825 G T C5orf38 Missense_Mutation p.G97V 0.12 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-WQ-A9G7-01 5 3600104 3600104 G A IRX1 Missense_Mutation p.A348T 0.04 tolerated(0.61) benign(0.001) TCGA-WQ-A9G7-01 5 86708674 86708674 G T CCNH 5'UTR 0.53 TCGA-WQ-A9G7-01 5 92923806 92923806 T C NR2F1 Missense_Mutation p.I216T 0.13 deleterious(0.01) probably_damaging(0.988) TCGA-WQ-A9G7-01 6 101247376 101247376 T C ASCC3 Missense_Mutation p.I400M 0.51 tolerated(0.11) benign(0.039) TCGA-WQ-A9G7-01 6 12124209 12124209 C - HIVEP1 Frame_Shift_Del p.P1395Hfs*21 0.15 TCGA-WQ-A9G7-01 6 151687009 151687009 T C ZBTB2 Missense_Mutation p.S398G 0.04 tolerated(0.05) probably_damaging(0.982) TCGA-WQ-A9G7-01 6 153296638 153296638 G A FBXO5 Silent p.Y74Y 0.27 TCGA-WQ-A9G7-01 6 158014023 158014023 T A ZDHHC14 Missense_Mutation p.I137N 0.12 tolerated(0.34) benign(0.027) TCGA-WQ-A9G7-01 6 158487675 158487675 C G SYNJ2 Intron 0.10 TCGA-WQ-A9G7-01 6 170697398 170697398 C A FAM120B Silent p.A769A 0.14 TCGA-WQ-A9G7-01 6 17629463 17629463 T C NUP153 Silent p.L989L 0.31 TCGA-WQ-A9G7-01 6 24850823 24850823 A G FAM65B Splice_Site p.X266_splice 0.11 TCGA-WQ-A9G7-01 6 26199792 26199792 T C HIST1H2BF Silent p.P2P 0.11 TCGA-WQ-A9G7-01 6 28097499 28097499 T C ZSCAN16 Missense_Mutation p.F273S 0.09 deleterious(0) probably_damaging(0.999) TCGA-WQ-A9G7-01 6 29523920 29523920 T A UBD Nonsense_Mutation p.K79* 0.24 TCGA-WQ-A9G7-01 6 30863232 30863232 G A DDR1 Missense_Mutation p.R522H 0.17 tolerated(0.42) possibly_damaging(0.676) TCGA-WQ-A9G7-01 6 31741028 31741028 T C VWA7 Missense_Mutation p.D303G 0.15 tolerated(1) benign(0.002) TCGA-WQ-A9G7-01 6 31749894 31749894 A C VARS Silent p.T737T 0.10 TCGA-WQ-A9G7-01 6 31963890 31963890 T A C4A Splice_Site p.X1129_splice 0.03 TCGA-WQ-A9G7-01 6 33164232 33164233 - C RXRB Frame_Shift_Ins p.T325Nfs*4 0.09 TCGA-WQ-A9G7-01 6 33239413 33239413 G A VPS52 Silent p.L14L 0.12 TCGA-WQ-A9G7-01 6 33258634 33258638 GGGGA - PFDN6 3'UTR 0.32 TCGA-WQ-A9G7-01 6 35443844 35443844 A T TEAD3 Missense_Mutation p.I251N 0.11 deleterious(0) probably_damaging(1) TCGA-WQ-A9G7-01 6 39867871 39867871 C T DAAM2 Missense_Mutation p.R900C 0.12 deleterious(0.04) benign(0) TCGA-WQ-A9G7-01 6 40360329 40360329 C T LRFN2 Missense_Mutation p.V575M 0.33 tolerated(0.17) benign(0.065) TCGA-WQ-A9G7-01 6 4069257 4069259 ATC - FAM217A In_Frame_Del p.D400del 0.16 TCGA-WQ-A9G7-01 6 41754061 41754061 G A PRICKLE4 Missense_Mutation p.A260T 0.10 tolerated(0.15) benign(0.014) TCGA-WQ-A9G7-01 6 42930828 42930828 G A GNMT Missense_Mutation p.R157Q 0.11 deleterious(0.01) benign(0.011) TCGA-WQ-A9G7-01 6 43172484 43172484 A C CUL9 Splice_Site p.X1447_splice 0.28 TCGA-WQ-A9G7-01 6 43181302 43181302 G A CUL9 Missense_Mutation p.G1829R 0.31 tolerated(0.33) benign(0.004) TCGA-WQ-A9G7-01 6 43192000 43192000 C A CUL9 Silent p.S2457S 0.11 TCGA-WQ-A9G7-01 6 43593198 43593198 G A GTPBP2 Missense_Mutation p.R203W 0.17 tolerated(0.14) probably_damaging(0.999) TCGA-WQ-A9G7-01 6 43608203 43608203 G A MAD2L1BP Missense_Mutation p.R285Q 0.05 tolerated(0.65) benign(0.005) TCGA-WQ-A9G7-01 6 50740417 50740417 C T TFAP2D Missense_Mutation p.T400I 0.19 deleterious(0.01) probably_damaging(0.968) TCGA-WQ-A9G7-01 6 5086858 5086858 G A PPP1R3G 3'UTR 0.32 TCGA-WQ-A9G7-01 6 65707487 65707487 T G EYS Missense_Mutation p.K749N 0.14 tolerated(0.42) benign(0.031) TCGA-WQ-A9G7-01 6 71546688 71546688 C T SMAP1 Silent p.S207S 0.34 TCGA-WQ-A9G7-01 6 86350164 86350164 C T SYNCRIP Silent p.Q89Q 0.58 TCGA-WQ-A9G7-01 6 87966812 87966812 T - ZNF292 Frame_Shift_Del p.L1157Cfs*5 0.29 TCGA-WQ-A9G7-01 6 97681837 97681837 T C MMS22L Missense_Mutation p.Q401R 0.41 deleterious(0) probably_damaging(0.979) TCGA-WQ-A9G7-01 7 101944137 101944137 C T SH2B2 Silent p.L144L 0.26 TCGA-WQ-A9G7-01 7 106685627 106685627 A C PRKAR2B Missense_Mutation p.E92A 0.36 tolerated(0.1) benign(0.011) TCGA-WQ-A9G7-01 7 106840668 106840668 C T HBP1 Silent p.Y483Y 0.23 TCGA-WQ-A9G7-01 7 123509038 123509038 C T HYAL4 Silent p.C237C 0.11 TCGA-WQ-A9G7-01 7 133979689 133979689 G A SLC35B4 Silent p.L298L 0.27 TCGA-WQ-A9G7-01 7 1487299 1487299 G - MICALL2 Frame_Shift_Del p.P146Qfs*107 0.22 TCGA-WQ-A9G7-01 7 150642530 150642530 G A KCNH2 Missense_Mutation p.R1135C 0.32 tolerated_low_confidence(0.05) possibly_damaging(0.801) TCGA-WQ-A9G7-01 7 158536382 158536382 G T ESYT2 Intron 0.09 TCGA-WQ-A9G7-01 7 21985488 21985488 C G CDCA7L 5'UTR 0.05 TCGA-WQ-A9G7-01 7 24859857 24859857 C T OSBPL3 Missense_Mutation p.V629I 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-WQ-A9G7-01 7 31123783 31123783 C T ADCYAP1R1 Missense_Mutation p.T119M 0.18 deleterious(0) probably_damaging(1) TCGA-WQ-A9G7-01 7 37954048 37954048 C T SFRP4 Silent p.K151K 0.30 TCGA-WQ-A9G7-01 7 42017310 42017310 G A GLI3 Silent p.C553C 0.27 TCGA-WQ-A9G7-01 7 44279240 44279240 C T CAMK2B Silent p.P323P 0.23 TCGA-WQ-A9G7-01 7 47925412 47925412 G A PKD1L1 Missense_Mutation p.A1026V 0.35 tolerated(0.16) benign(0.159) TCGA-WQ-A9G7-01 7 5427704 5427704 G A TNRC18 Missense_Mutation p.A584V 0.28 probably_damaging(0.997) TCGA-WQ-A9G7-01 7 55750332 55750332 C T RNU6-389P 5'Flank 0.24 TCGA-WQ-A9G7-01 7 72430353 72430353 T C TRIM74 3'UTR 0.11 TCGA-WQ-A9G7-01 7 72891569 72891569 G A BAZ1B Missense_Mutation p.T741M 0.28 deleterious(0.03) probably_damaging(0.935) TCGA-WQ-A9G7-01 7 82583461 82583461 C T PCLO Missense_Mutation p.A2270T 0.40 unknown(0) TCGA-WQ-A9G7-01 7 94928190 94928190 C A PON1 3'UTR 0.15 TCGA-WQ-A9G7-01 7 98528292 98528292 C T TRRAP Missense_Mutation p.R1144C 0.37 probably_damaging(0.987) TCGA-WQ-A9G7-01 7 99092121 99092121 A G ZNF394 Silent p.H239H 0.27 TCGA-WQ-A9G7-01 8 101118218 101118218 G A RGS22 5'UTR 0.14 TCGA-WQ-A9G7-01 8 123965549 123965549 A G ZHX2 Missense_Mutation p.K600R 0.10 tolerated(0.34) probably_damaging(0.997) TCGA-WQ-A9G7-01 8 136470061 136470062 - C KHDRBS3 5'UTR 0.09 TCGA-WQ-A9G7-01 8 143563066 143563066 C T BAI1 Silent p.D708D 0.06 TCGA-WQ-A9G7-01 8 143599549 143599549 C T BAI1 Silent p.G956G 0.13 TCGA-WQ-A9G7-01 8 144378780 144378780 G A ZNF696 Missense_Mutation p.R312H 0.31 tolerated(0.08) benign(0.151) TCGA-WQ-A9G7-01 8 144657636 144657636 C T NAPRT1 Silent p.T416T 0.21 TCGA-WQ-A9G7-01 8 145058580 145058580 G T PARP10 Missense_Mutation p.S493Y 0.13 deleterious(0) possibly_damaging(0.496) TCGA-WQ-A9G7-01 8 145095783 145095784 - C SPATC1 Frame_Shift_Ins p.H363Pfs*8 0.18 TCGA-WQ-A9G7-01 8 145724317 145724317 C T PPP1R16A Nonsense_Mutation p.R117* 0.08 TCGA-WQ-A9G7-01 8 145727136 145727136 T C PPP1R16A Silent p.P479P 0.09 TCGA-WQ-A9G7-01 8 21767272 21767272 C T DOK2 Silent p.S263S 0.33 TCGA-WQ-A9G7-01 8 21958199 21958199 G A FAM160B2 Missense_Mutation p.R479H 0.40 deleterious(0) probably_damaging(0.968) TCGA-WQ-A9G7-01 8 21976493 21976493 G A HR Silent p.D1061D 0.38 TCGA-WQ-A9G7-01 8 33357912 33357912 G A TTI2 Silent p.S452S 0.49 TCGA-WQ-A9G7-01 8 41530301 41530301 T C ANK1 Missense_Mutation p.E1597G 0.23 deleterious_low_confidence(0) possibly_damaging(0.575) TCGA-WQ-A9G7-01 8 42178286 42178286 A G IKBKB Missense_Mutation p.M538V 0.11 tolerated(0.21) probably_damaging(0.977) TCGA-WQ-A9G7-01 8 42263137 42263137 C T VDAC3 3'Flank 0.10 TCGA-WQ-A9G7-01 8 49832741 49832741 T C SNAI2 Silent p.L113L 0.23 TCGA-WQ-A9G7-01 8 53079427 53079427 G A ST18 Missense_Mutation p.R397W 0.18 deleterious(0) probably_damaging(1) TCGA-WQ-A9G7-01 8 66635516 66635516 G A PDE7A Intron 0.47 TCGA-WQ-A9G7-01 8 67796211 67796211 A T MCMDC2 Missense_Mutation p.D352V 0.16 deleterious(0) probably_damaging(0.992) TCGA-WQ-A9G7-01 8 68151115 68151115 G A ARFGEF1 Missense_Mutation p.A998V 0.12 deleterious(0) probably_damaging(0.928) TCGA-WQ-A9G7-01 8 70744859 70744859 G A SLCO5A1 Missense_Mutation p.A17V 0.22 tolerated_low_confidence(0.18) benign(0.003) TCGA-WQ-A9G7-01 8 72267025 72267025 C T EYA1 Missense_Mutation p.G39D 0.13 deleterious(0.01) probably_damaging(1) TCGA-WQ-A9G7-01 8 74209403 74209403 C A RDH10 Intron 0.07 TCGA-WQ-A9G7-01 8 75276245 75276245 C T GDAP1 Silent p.C240C 0.11 TCGA-WQ-A9G7-01 8 77617094 77617094 T C ZFHX4 Silent p.P257P 0.34 TCGA-WQ-A9G7-01 8 77617133 77617133 C T ZFHX4 Silent p.S270S 0.04 TCGA-WQ-A9G7-01 8 81897456 81897456 G A PAG1 Missense_Mutation p.T144I 0.26 deleterious(0.04) benign(0.113) TCGA-WQ-A9G7-01 8 96167074 96167075 - G PLEKHF2 3'UTR 0.17 TCGA-WQ-A9G7-01 8 97621775 97621775 A - SDC2 Frame_Shift_Del 0.15 TCGA-WQ-A9G7-01 9 103065915 103065915 G A TEX10 Missense_Mutation p.T892M 0.15 tolerated(0.41) benign(0.015) TCGA-WQ-A9G7-01 9 118163488 118163488 T C DEC1 Missense_Mutation p.L35P 0.18 deleterious_low_confidence(0) benign(0.202) TCGA-WQ-A9G7-01 9 122011281 122011281 G T BRINP1 Silent p.I122I 0.17 TCGA-WQ-A9G7-01 9 125330390 125330390 G A OR1L8 Missense_Mutation p.R123C 0.42 deleterious(0.01) benign(0.021) TCGA-WQ-A9G7-01 9 131012531 131012531 G A DNM1 Silent p.A738A 0.32 TCGA-WQ-A9G7-01 9 131084864 131084864 T C TRUB2 5'UTR 0.44 TCGA-WQ-A9G7-01 9 131480648 131480650 AGA - PKN3 In_Frame_Del p.K679del 0.15 TCGA-WQ-A9G7-01 9 132595904 132595904 C T C9orf78 Intron 0.10 TCGA-WQ-A9G7-01 9 132631276 132631276 A G USP20 Missense_Mutation p.K424R 0.06 deleterious(0.01) benign(0.247) TCGA-WQ-A9G7-01 9 137687112 137687112 C T COL5A1 Missense_Mutation p.P917L 0.12 unknown(0) TCGA-WQ-A9G7-01 9 138376419 138376419 G A PPP1R26 Silent p.P21P 0.17 TCGA-WQ-A9G7-01 9 138376561 138376561 G A PPP1R26 Missense_Mutation p.A69T 0.15 tolerated(0.85) benign(0.091) TCGA-WQ-A9G7-01 9 138395347 138395347 G A MRPS2 Intron 0.12 TCGA-WQ-A9G7-01 9 138591347 138591347 G A SOHLH1 5'UTR 0.16 TCGA-WQ-A9G7-01 9 139405699 139405699 G A NOTCH1 Missense_Mutation p.A831V 0.31 tolerated(0.25) probably_damaging(0.999) TCGA-WQ-A9G7-01 9 139835867 139835867 G A FBXW5 Silent p.A431A 0.18 TCGA-WQ-A9G7-01 9 139925470 139925470 A T FUT7 Missense_Mutation p.F241I 0.08 deleterious(0.02) possibly_damaging(0.587) TCGA-WQ-A9G7-01 9 18777687 18777687 G - ADAMTSL1 Frame_Shift_Del p.G1155Efs*42 0.19 TCGA-WQ-A9G7-01 9 2718843 2718843 C T KCNV2 Silent p.S368S 0.18 TCGA-WQ-A9G7-01 9 32544180 32544180 A G TOPORS Missense_Mutation p.Y115H 0.09 tolerated(0.06) possibly_damaging(0.884) TCGA-WQ-A9G7-01 9 32635412 32635412 C T TAF1L Missense_Mutation p.V56I 0.24 tolerated(0.54) benign(0.032) TCGA-WQ-A9G7-01 9 34611031 34611031 C T RPP25L Missense_Mutation p.R88H 0.18 tolerated(0.59) benign(0.005) TCGA-WQ-A9G7-01 9 37919975 37919975 T C SHB Missense_Mutation p.K458R 0.21 deleterious(0) probably_damaging(0.91) TCGA-WQ-A9G7-01 9 71628335 71628335 A G PRKACG Missense_Mutation p.L225P 0.12 deleterious(0) probably_damaging(0.997) TCGA-WQ-A9G7-01 9 7174674 7174674 T C KDM4C Missense_Mutation p.V1039A 0.06 tolerated(0.19) benign(0.214) TCGA-WQ-A9G7-01 9 72131414 72131414 T C APBA1 Missense_Mutation p.Y238C 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-WQ-A9G7-01 9 91940370 91940370 T G SECISBP2 Missense_Mutation p.F71V 0.06 deleterious(0.03) possibly_damaging(0.507) TCGA-WQ-A9G7-01 9 96080811 96080812 - C C9orf129 Frame_Shift_Ins p.H154Afs*6 0.15 TCGA-WQ-A9G7-01 9 99006674 99006674 C T HSD17B3 Silent p.A203A 0.45 TCGA-WQ-A9G7-01 X 100807849 100807849 G A ARMCX1 5'UTR 0.38 TCGA-WQ-A9G7-01 X 102334186 102334186 C T NXF3 Nonsense_Mutation p.W447* 0.02 TCGA-WQ-A9G7-01 X 102471235 102471236 - G BEX4 Frame_Shift_Ins p.R54Afs*3 0.12 TCGA-WQ-A9G7-01 X 103498837 103498837 C T ESX1 Silent p.A168A 0.29 TCGA-WQ-A9G7-01 X 104464092 104464092 G A TEX13A Nonsense_Mutation p.Q262* 0.27 TCGA-WQ-A9G7-01 X 107681619 107681619 C T COL4A6 Intron 0.11 TCGA-WQ-A9G7-01 X 109764542 109764542 G T TDGF1P3 RNA 0.18 TCGA-WQ-A9G7-01 X 110491972 110491972 G A CAPN6 Missense_Mutation p.H437Y 0.34 deleterious(0) possibly_damaging(0.728) TCGA-WQ-A9G7-01 X 110654044 110654044 C A DCX Missense_Mutation p.E53D 0.05 deleterious_low_confidence(0) unknown(0) TCGA-WQ-A9G7-01 X 114424762 114424762 T C RBMXL3 Missense_Mutation p.V253A 0.04 tolerated_low_confidence(0.68) benign(0.006) TCGA-WQ-A9G7-01 X 118708586 118708588 CTC - UBE2A 5'UTR 0.31 TCGA-WQ-A9G7-01 X 119739358 119739358 T C MCTS1 Silent p.I37I 0.26 TCGA-WQ-A9G7-01 X 119760167 119760167 C G C1GALT1C1 Missense_Mutation p.Q285H 0.32 tolerated(0.32) benign(0.017) TCGA-WQ-A9G7-01 X 120181885 120181885 T C GLUD2 Missense_Mutation p.L116P 0.17 deleterious(0) probably_damaging(0.992) TCGA-WQ-A9G7-01 X 122387281 122387281 C T GRIA3 Silent p.D132D 0.20 TCGA-WQ-A9G7-01 X 123191803 123191803 G A STAG2 Silent p.L464L 0.10 TCGA-WQ-A9G7-01 X 123517731 123517731 G A TENM1 Silent p.G2350G 0.12 TCGA-WQ-A9G7-01 X 125686153 125686153 G T DCAF12L1 Missense_Mutation p.Q147K 0.04 deleterious(0.03) benign(0.009) TCGA-WQ-A9G7-01 X 128701327 128701327 C T OCRL Missense_Mutation p.R485W 0.31 deleterious(0.01) probably_damaging(0.973) TCGA-WQ-A9G7-01 X 129185869 129185869 T C BCORL1 Silent p.H1577H 0.04 TCGA-WQ-A9G7-01 X 129759306 129759306 C A ENOX2 Missense_Mutation p.E605D 0.04 tolerated(0.62) benign(0.002) TCGA-WQ-A9G7-01 X 132352255 132352255 G A TFDP3 Silent p.N11N 0.32 TCGA-WQ-A9G7-01 X 134987456 134987456 G A SAGE1 Missense_Mutation p.G120D 0.11 tolerated(0.27) benign(0.093) TCGA-WQ-A9G7-01 X 135431189 135431189 A G GPR112 Missense_Mutation p.K1775R 0.27 deleterious(0.01) benign(0.276) TCGA-WQ-A9G7-01 X 136648912 136648912 C T ZIC3 Missense_Mutation p.A21V 0.10 tolerated_low_confidence(0.1) benign(0.057) TCGA-WQ-A9G7-01 X 139586440 139586440 C T SOX3 Silent p.T262T 0.12 TCGA-WQ-A9G7-01 X 142717165 142717165 G A SLITRK4 Missense_Mutation p.P587L 0.11 tolerated(0.17) possibly_damaging(0.557) TCGA-WQ-A9G7-01 X 1484120 1484120 C T IL3RA Silent p.S283S 0.06 TCGA-WQ-A9G7-01 X 149931129 149931129 G A MTMR1 Missense_Mutation p.R642H 0.30 tolerated(0.14) benign(0.066) TCGA-WQ-A9G7-01 X 151935213 151935213 T C MAGEA3 3'UTR 0.30 TCGA-WQ-A9G7-01 X 152615692 152615692 C T ZNF275 3'UTR 0.14 TCGA-WQ-A9G7-01 X 153152456 153152456 G A LCA10 Silent p.V281V 0.29 TCGA-WQ-A9G7-01 X 153214785 153214785 A G HCFC1 3'UTR 0.27 TCGA-WQ-A9G7-01 X 155006001 155006001 A G SPRY3 3'UTR 0.23 TCGA-WQ-A9G7-01 X 155255051 155255051 A G WASH6P RNA 0.04 TCGA-WQ-A9G7-01 X 15794875 15794875 C T CA5B Silent p.C219C 0.37 TCGA-WQ-A9G7-01 X 20252897 20252897 C T RPS6KA3 Silent p.E35E 0.12 TCGA-WQ-A9G7-01 X 34149344 34149344 C T FAM47A Missense_Mutation p.R351H 0.17 tolerated(0.85) benign(0.001) TCGA-WQ-A9G7-01 X 36122660 36122660 G C CHDC2 Missense_Mutation p.M299I 0.14 tolerated(0.23) benign(0.007) TCGA-WQ-A9G7-01 X 47004153 47004153 G A NDUFB11 5'UTR 0.14 TCGA-WQ-A9G7-01 X 47444965 47444965 C T TIMP1 Missense_Mutation p.H118Y 0.19 tolerated(0.81) benign(0.009) TCGA-WQ-A9G7-01 X 48547405 48547405 G T WAS Missense_Mutation p.G430C 0.04 deleterious(0) unknown(0) TCGA-WQ-A9G7-01 X 48847397 48847397 T C GRIPAP1 Missense_Mutation p.K195E 0.27 possibly_damaging(0.858) TCGA-WQ-A9G7-01 X 49020517 49020517 C T MAGIX Intron 0.27 TCGA-WQ-A9G7-01 X 49032590 49032590 C T PRICKLE3 Missense_Mutation p.R427H 0.21 tolerated(0.48) benign(0.003) TCGA-WQ-A9G7-01 X 49082873 49082873 G A CACNA1F Silent p.C498C 0.06 TCGA-WQ-A9G7-01 X 54957724 54957724 C T TRO 3'UTR 0.04 TCGA-WQ-A9G7-01 X 65483530 65483530 G A HEPH Missense_Mutation p.A1136T 0.28 tolerated(0.28) benign(0.011) TCGA-WQ-A9G7-01 X 83723918 83723918 G A HDX Silent p.S271S 0.22 TCGA-WQ-A9G7-01 X 8763403 8763403 C T FAM9A Missense_Mutation p.A183T 0.35 tolerated_low_confidence(0.82) probably_damaging(0.913) TCGA-WQ-AB4B-01 10 117278802 117278802 G A ATRNL1 Missense_Mutation p.M1228I 0.43 deleterious(0.03) possibly_damaging(0.852) TCGA-WQ-AB4B-01 10 129537185 129537185 C T FOXI2 Missense_Mutation p.R305C 0.07 deleterious(0.01) benign(0.041) TCGA-WQ-AB4B-01 11 1031883 1031883 G A MUC6 Missense_Mutation p.R96W 0.13 unknown(0) TCGA-WQ-AB4B-01 11 1251007 1251007 G A MUC5B Missense_Mutation p.G397D 0.29 unknown(0) TCGA-WQ-AB4B-01 11 134028290 134028290 C A NCAPD3 Missense_Mutation p.G1323V 0.10 tolerated(0.13) benign(0.051) TCGA-WQ-AB4B-01 11 5372807 5372807 T A OR51B6 Missense_Mutation p.W24R 0.04 deleterious(0) benign(0.112) TCGA-WQ-AB4B-01 11 67815394 67815394 C T TCIRG1 Silent p.N503N 0.29 TCGA-WQ-AB4B-01 12 108051499 108051499 G A BTBD11 3'UTR 0.34 TCGA-WQ-AB4B-01 12 119978493 119978493 C T CCDC60 Silent p.P542P 0.31 TCGA-WQ-AB4B-01 12 55945602 55945602 A G OR6C4 Missense_Mutation p.I198V 0.34 deleterious_low_confidence(0.02) benign(0.056) TCGA-WQ-AB4B-01 12 56732734 56732734 G A IL23A 5'UTR 0.24 TCGA-WQ-AB4B-01 12 57482915 57482915 T G NAB2 5'UTR 0.32 TCGA-WQ-AB4B-01 13 46085912 46085912 C A COG3 Missense_Mutation p.Q578K 0.10 deleterious(0) benign(0.124) TCGA-WQ-AB4B-01 14 45496671 45496671 A G FAM179B Silent p.E1166E 0.22 TCGA-WQ-AB4B-01 14 69256295 69256295 T G ZFP36L1 Silent p.S324S 0.15 TCGA-WQ-AB4B-01 14 91633871 91633871 C G C14orf159 Intron 0.25 TCGA-WQ-AB4B-01 15 27193200 27193200 C A GABRA5 Silent p.V403V 0.42 TCGA-WQ-AB4B-01 15 45396214 45396214 C T DUOX2 Missense_Mutation p.M866I 0.45 deleterious(0) benign(0.428) TCGA-WQ-AB4B-01 15 45433134 45433134 C A DUOX1 Silent p.S477S 0.25 TCGA-WQ-AB4B-01 15 72338657 72338657 A C MYO9A Missense_Mutation p.V83G 0.43 deleterious(0) probably_damaging(0.999) TCGA-WQ-AB4B-01 15 72541642 72541642 G A PARP6 Missense_Mutation p.A502V 0.45 tolerated(0.08) probably_damaging(1) TCGA-WQ-AB4B-01 16 1396324 1396324 C T BAIAP3 Missense_Mutation p.R854W 0.33 deleterious(0) possibly_damaging(0.582) TCGA-WQ-AB4B-01 17 33953639 33953639 G A AP2B1 Splice_Site p.X239_splice 0.31 TCGA-WQ-AB4B-01 17 62796472 62796472 T C PLEKHM1P RNA 0.06 TCGA-WQ-AB4B-01 17 70120053 70120053 C T SOX9 Missense_Mutation p.A352V 0.39 tolerated(0.06) benign(0.006) TCGA-WQ-AB4B-01 17 73805893 73805893 T C UNK Missense_Mutation p.C53R 0.23 deleterious(0) probably_damaging(0.996) TCGA-WQ-AB4B-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.22 deleterious(0) probably_damaging(1) TCGA-WQ-AB4B-01 18 43664244 43664244 G C ATP5A1 3'UTR 0.31 TCGA-WQ-AB4B-01 19 14765959 14765959 T G EMR3 Missense_Mutation p.K138Q 0.05 tolerated(0.52) benign(0.002) TCGA-WQ-AB4B-01 19 21909882 21909882 T A ZNF100 Missense_Mutation p.N411I 0.18 tolerated(0.18) possibly_damaging(0.776) TCGA-WQ-AB4B-01 19 22847068 22847068 C T ZNF492 Silent p.C199C 0.24 TCGA-WQ-AB4B-01 19 23542679 23542679 G A ZNF91 Silent p.S1034S 0.06 TCGA-WQ-AB4B-01 19 53668097 53668097 T C ZNF665 Missense_Mutation p.K549R 0.21 deleterious(0.03) probably_damaging(0.989) TCGA-WQ-AB4B-01 19 53857081 53857081 G A ZNF845 3'UTR 0.16 TCGA-WQ-AB4B-01 19 54545432 54545432 G C VSTM1 Missense_Mutation p.S169C 0.34 deleterious(0.04) probably_damaging(0.96) TCGA-WQ-AB4B-01 19 54802132 54802132 C G LILRA3 Missense_Mutation p.M352I 0.38 tolerated(0.18) benign(0.057) TCGA-WQ-AB4B-01 19 56180129 56180129 G C U2AF2 Missense_Mutation p.E306Q 0.25 deleterious(0.01) probably_damaging(0.924) TCGA-WQ-AB4B-01 19 8455046 8455046 C A RAB11B 5'Flank 0.30 TCGA-WQ-AB4B-01 1 150235583 150235583 G T CA14 Missense_Mutation p.Q235H 0.05 deleterious(0.01) probably_damaging(0.934) TCGA-WQ-AB4B-01 1 166826920 166826920 C G TADA1 Missense_Mutation p.A298P 0.35 deleterious(0.01) probably_damaging(0.972) TCGA-WQ-AB4B-01 1 173579110 173579110 C T ANKRD45 3'UTR 0.21 TCGA-WQ-AB4B-01 1 17410314 17410314 C T PADI2 Silent p.L319L 0.43 TCGA-WQ-AB4B-01 1 186047303 186047303 T A HMCN1 Silent p.A2850A 0.14 TCGA-WQ-AB4B-01 1 202287683 202287683 A G LGR6 Missense_Mutation p.Y751C 0.45 deleterious(0.01) benign(0.33) TCGA-WQ-AB4B-01 1 26487902 26487902 G T FAM110D Missense_Mutation p.E40D 0.36 deleterious(0.04) probably_damaging(0.998) TCGA-WQ-AB4B-01 1 46195357 46195357 T G IPP Missense_Mutation p.K270T 0.21 deleterious(0.02) possibly_damaging(0.511) TCGA-WQ-AB4B-01 1 6681657 6681657 A G PHF13 Missense_Mutation p.N288S 0.05 tolerated(0.14) benign(0.002) TCGA-WQ-AB4B-01 1 70541785 70541785 T C LRRC7 Missense_Mutation p.M1381T 0.05 tolerated(0.07) benign(0.345) TCGA-WQ-AB4B-01 20 21493051 21493065 GACTCGTCGGCCGAG - NKX2-2 In_Frame_Del p.S107_S111del 0.44 TCGA-WQ-AB4B-01 20 47267479 47267479 C A PREX1 Missense_Mutation p.D924Y 0.18 deleterious(0) probably_damaging(0.928) TCGA-WQ-AB4B-01 20 47267528 47267528 C T PREX1 Silent p.L907L 0.18 TCGA-WQ-AB4B-01 20 47267976 47267976 C T PREX1 Silent p.E871E 0.14 TCGA-WQ-AB4B-01 20 51870809 51870809 C A TSHZ2 Missense_Mutation p.A271D 0.04 deleterious(0) probably_damaging(0.999) TCGA-WQ-AB4B-01 20 58514721 58514721 G A PPP1R3D Missense_Mutation p.P89L 0.12 tolerated(0.06) benign(0.017) TCGA-WQ-AB4B-01 20 60754500 60754500 C T SS18L1 3'UTR 0.20 TCGA-WQ-AB4B-01 20 62837008 62837008 C T MYT1 Silent p.D84D 0.27 TCGA-WQ-AB4B-01 22 17071949 17071949 T C CCT8L2 Missense_Mutation p.I498V 0.44 tolerated(0.47) benign(0.002) TCGA-WQ-AB4B-01 22 22842090 22842090 A C ZNF280B 3'UTR 0.13 TCGA-WQ-AB4B-01 22 39482490 39482490 C T APOBEC3G Silent p.I314I 0.17 TCGA-WQ-AB4B-01 2 162894911 162894911 T C DPP4 Missense_Mutation p.I172V 0.10 tolerated(0.52) benign(0.019) TCGA-WQ-AB4B-01 2 197948233 197948233 C T ANKRD44 Silent p.R414R 0.14 TCGA-WQ-AB4B-01 2 241570333 241570333 G A GPR35 3'UTR 0.15 TCGA-WQ-AB4B-01 2 44152227 44152227 A G LRPPRC Missense_Mutation p.Y959H 0.21 tolerated(0.13) benign(0.072) TCGA-WQ-AB4B-01 2 69408989 69408989 C T ANTXR1 Silent p.G387G 0.25 TCGA-WQ-AB4B-01 3 150480232 150480232 C T SIAH2 Silent p.L135L 0.46 TCGA-WQ-AB4B-01 3 161221449 161221449 C T OTOL1 Missense_Mutation p.P385S 0.05 tolerated(0.1) probably_damaging(0.99) TCGA-WQ-AB4B-01 3 169663999 169663999 G A RP11-379K17.4 RNA 0.30 TCGA-WQ-AB4B-01 3 194140666 194140666 T C ATP13A3 Missense_Mutation p.Y1115C 0.05 deleterious(0.03) benign(0.009) TCGA-WQ-AB4B-01 4 160277049 160277049 G A RAPGEF2 Missense_Mutation p.G1405S 0.23 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-WQ-AB4B-01 4 184367702 184367702 G T CDKN2AIP Nonsense_Mutation p.E289* 0.24 TCGA-WQ-AB4B-01 4 189013069 189013069 C A TRIML2 Missense_Mutation p.A208S 0.12 deleterious(0) probably_damaging(1) TCGA-WQ-AB4B-01 4 74272459 74272459 A - ALB Frame_Shift_Del p.N85Ifs*56 0.10 TCGA-WQ-AB4B-01 4 74280793 74280793 T C ALB Missense_Mutation p.V367A 0.42 tolerated(0.62) benign(0.025) TCGA-WQ-AB4B-01 4 96761441 96761441 G T PDHA2 Missense_Mutation p.G47V 0.18 deleterious(0.01) possibly_damaging(0.835) TCGA-WQ-AB4B-01 5 147862554 147862554 A T HTR4 3'UTR 0.55 TCGA-WQ-AB4B-01 5 169507279 169507279 C A DOCK2 Missense_Mutation p.T1760N 0.28 deleterious_low_confidence(0.01) benign(0.347) TCGA-WQ-AB4B-01 5 169507280 169507280 C A DOCK2 Silent p.T1760T 0.28 TCGA-WQ-AB4B-01 5 179302088 179302088 G A TBC1D9B Missense_Mutation p.S667L 0.36 deleterious(0) probably_damaging(1) TCGA-WQ-AB4B-01 5 55422893 55422893 T G ANKRD55 Missense_Mutation p.H218P 0.29 tolerated(0.16) benign(0.002) TCGA-WQ-AB4B-01 5 677962 677962 G T TPPP Missense_Mutation p.H72N 0.44 tolerated(1) possibly_damaging(0.799) TCGA-WQ-AB4B-01 6 100057092 100057092 G T PRDM13 Missense_Mutation p.Q102H 0.36 deleterious(0.01) possibly_damaging(0.467) TCGA-WQ-AB4B-01 6 121769237 121769237 G T GJA1 3'UTR 0.36 TCGA-WQ-AB4B-01 6 121770240 121770240 T G GJA1 3'UTR 0.30 TCGA-WQ-AB4B-01 6 161771035 161771035 C T PARK2 3'UTR 0.08 TCGA-WQ-AB4B-01 6 43305929 43305929 C T ZNF318 Missense_Mutation p.R1936K 0.14 benign(0.031) TCGA-WQ-AB4B-01 6 51910977 51910977 A G PKHD1 Missense_Mutation p.V806A 0.10 tolerated(0.17) benign(0.076) TCGA-WQ-AB4B-01 6 75847218 75847218 T C COL12A1 Missense_Mutation p.S1777G 0.31 possibly_damaging(0.578) TCGA-WQ-AB4B-01 6 85446692 85446699 TGGTTAGT - TBX18 Frame_Shift_Del p.T510Dfs*7 0.21 TCGA-WQ-AB4B-01 7 100333379 100333379 C G ZAN Silent p.R30R 0.11 TCGA-WQ-AB4B-01 7 127014205 127014205 T - ZNF800 Frame_Shift_Del p.G396Afs*11 0.13 TCGA-WQ-AB4B-01 7 154667719 154667719 C T DPP6 Missense_Mutation p.R663C 0.17 deleterious(0) probably_damaging(0.998) TCGA-WQ-AB4B-01 7 82545902 82545902 G A PCLO Silent p.Y3800Y 0.07 TCGA-WQ-AB4B-01 7 99273872 99273872 T C CYP3A5 Intron 0.30 TCGA-WQ-AB4B-01 8 139601631 139601631 G A COL22A1 Silent p.G1582G 0.10 TCGA-WQ-AB4B-01 8 87423833 87423833 C G WWP1 Missense_Mutation p.S264C 0.20 deleterious(0.02) possibly_damaging(0.503) TCGA-WQ-AB4B-01 8 95206861 95206861 A T CDH17 Splice_Site p.X17_splice 0.62 TCGA-WQ-AB4B-01 9 119460448 119460448 G A TRIM32 Missense_Mutation p.E143K 0.48 deleterious(0.01) benign(0.197) TCGA-WQ-AB4B-01 9 125084992 125084992 A G MRRF 3'UTR 0.18 TCGA-WQ-AB4B-01 9 32543499 32543499 G A TOPORS Missense_Mutation p.P342S 0.21 tolerated(0.06) probably_damaging(0.925) TCGA-WQ-AB4B-01 9 73213415 73213415 T A TRPM3 Missense_Mutation p.I978F 0.16 deleterious(0) probably_damaging(0.997) TCGA-WQ-AB4B-01 X 118975107 118975108 - A UPF3B Frame_Shift_Ins p.I247Yfs*19 0.33 TCGA-WQ-AB4B-01 Y 16941993 16942017 GTGTCCAACTTCGTGGACAACCTTT CTTC NLGN4Y In_Frame_Del p.V399_Y407delinsLH 0.29 TCGA-WQ-AB4B-01 Y 16942005 16942017 GTGGACAACCTTT - NLGN4Y Frame_Shift_Del p.V403Tfs*74 0.48 TCGA-WQ-AB4B-01 Y 16942017 16942017 T C NLGN4Y Missense_Mutation p.Y407H 0.32 deleterious(0) probably_damaging(0.997) TCGA-WX-AA44-01 10 101295226 101295226 C A NKX2-3 Silent p.A281A 0.12 TCGA-WX-AA44-01 10 108489808 108489808 G A SORCS1 Missense_Mutation p.H342Y 0.04 tolerated(1) benign(0.013) TCGA-WX-AA44-01 10 25140374 25140374 T C PRTFDC1 Silent p.P191P 0.20 TCGA-WX-AA44-01 10 71962820 71962820 T C PPA1 3'UTR 0.27 TCGA-WX-AA44-01 11 118242363 118242363 C T UBE4A Silent p.F181F 0.21 TCGA-WX-AA44-01 11 33350093 33350093 G A HIPK3 Missense_Mutation p.A379T 0.33 deleterious(0) probably_damaging(0.995) TCGA-WX-AA44-01 11 55563748 55563748 C T OR5D14 Silent p.A239A 0.36 TCGA-WX-AA44-01 11 56344387 56344387 A T OR5M10 Missense_Mutation p.S271T 0.29 deleterious(0.05) probably_damaging(0.998) TCGA-WX-AA44-01 11 66188745 66188745 C T NPAS4 Missense_Mutation p.A32V 0.36 deleterious(0.05) benign(0.049) TCGA-WX-AA44-01 12 27863799 27863799 C T MRPS35 Missense_Mutation p.A8V 0.41 tolerated_low_confidence(0.6) benign(0.014) TCGA-WX-AA44-01 12 56817448 56817448 C T TIMELESS Silent p.E670E 0.06 TCGA-WX-AA44-01 12 9345225 9345240 AATGTAACTTCCACTT - PZP Frame_Shift_Del p.L450Ffs*24 0.24 TCGA-WX-AA44-01 13 20567236 20567236 A G ZMYM2 Silent p.G8G 0.24 TCGA-WX-AA44-01 13 48923090 48923090 A T RB1 Splice_Site p.X180_splice 0.56 TCGA-WX-AA44-01 14 104578313 104578313 G A ASPG Silent p.A559A 0.26 TCGA-WX-AA44-01 14 105406860 105406860 G A AHNAK2 Silent p.D4976D 0.27 TCGA-WX-AA44-01 14 24845640 24845640 G A NFATC4 Missense_Mutation p.E796K 0.30 tolerated_low_confidence(0.31) possibly_damaging(0.801) TCGA-WX-AA44-01 14 82000074 82000074 T C SEL1L Missense_Mutation p.I5M 0.33 deleterious_low_confidence(0.02) benign(0.047) TCGA-WX-AA44-01 15 73408928 73408928 G C NEO1 Missense_Mutation p.V60L 0.19 tolerated(0.37) benign(0.005) TCGA-WX-AA44-01 16 53338133 53338133 T C CHD9 Missense_Mutation p.L2072P 0.37 possibly_damaging(0.515) TCGA-WX-AA44-01 16 69056820 69056820 T G TANGO6 Missense_Mutation p.L978V 0.37 tolerated(0.06) possibly_damaging(0.502) TCGA-WX-AA44-01 17 37619208 37619208 A G CDK12 Missense_Mutation p.Y295C 0.31 unknown(0) TCGA-WX-AA44-01 17 39535325 39535325 T A KRT34 Missense_Mutation p.E369V 0.28 deleterious(0) probably_damaging(0.985) TCGA-WX-AA44-01 17 46620596 46620596 G T HOXB2 Missense_Mutation p.P302H 0.33 deleterious(0) probably_damaging(0.998) TCGA-WX-AA44-01 17 72367914 72367914 C T GPR142 Silent p.T188T 0.32 TCGA-WX-AA44-01 17 7576928 7576928 T C TP53 Splice_Site p.X307_splice 0.49 TCGA-WX-AA44-01 19 11532471 11532471 C G CCDC151 Silent p.L488L 0.43 TCGA-WX-AA44-01 19 16296481 16296481 A G FAM32A Missense_Mutation p.M41V 0.27 tolerated(0.48) benign(0.008) TCGA-WX-AA44-01 19 32968508 32968508 T A DPY19L3 Missense_Mutation p.L593Q 0.32 deleterious(0) probably_damaging(0.994) TCGA-WX-AA44-01 19 39805160 39805160 C A LRFN1 Nonsense_Mutation p.E273* 0.21 TCGA-WX-AA44-01 19 40225044 40225044 C T CLC Missense_Mutation p.R61H 0.39 tolerated(0.54) benign(0.009) TCGA-WX-AA44-01 19 41056177 41056177 C T SPTBN4 Nonsense_Mutation p.Q1540* 0.13 TCGA-WX-AA44-01 19 44934548 44934548 A G ZNF229 Silent p.D136D 0.30 TCGA-WX-AA44-01 19 50380084 50380084 T C AKT1S1 5'UTR 0.48 TCGA-WX-AA44-01 19 52794386 52794386 T G ZNF766 Missense_Mutation p.F448V 0.31 deleterious(0.01) probably_damaging(0.972) TCGA-WX-AA44-01 19 56424387 56424387 A C NLRP13 Missense_Mutation p.F266V 0.27 deleterious(0) probably_damaging(0.986) TCGA-WX-AA44-01 19 56895920 56895920 C A ZNF582 Missense_Mutation p.G289V 0.32 deleterious(0) possibly_damaging(0.804) TCGA-WX-AA44-01 19 57705355 57705355 T C ZNF264 Missense_Mutation p.L49P 0.22 deleterious(0) probably_damaging(0.981) TCGA-WX-AA44-01 1 110173592 110173592 T A AMPD2 Missense_Mutation p.Y820N 0.26 deleterious(0) probably_damaging(0.99) TCGA-WX-AA44-01 1 145509309 145509309 A T RBM8A 3'UTR 0.16 TCGA-WX-AA44-01 1 149398867 149398867 C T HIST2H3PS2 3'Flank 0.17 TCGA-WX-AA44-01 1 153317739 153317739 G T PGLYRP4 Missense_Mutation p.L87M 0.61 tolerated(0.58) possibly_damaging(0.725) TCGA-WX-AA44-01 1 1684446 1684446 G T NADK Missense_Mutation p.P558H 0.35 tolerated(0.13) benign(0.062) TCGA-WX-AA44-01 1 235892901 235892901 A G LYST Missense_Mutation p.L3034S 0.17 deleterious(0) probably_damaging(0.995) TCGA-WX-AA44-01 1 240493999 240493999 G T FMN2 Missense_Mutation p.D1512Y 0.42 probably_damaging(1) TCGA-WX-AA44-01 1 2430060 2430060 G A PLCH2 Missense_Mutation p.D748N 0.24 deleterious(0.01) possibly_damaging(0.899) TCGA-WX-AA44-01 1 35972470 35972470 C T KIAA0319L Missense_Mutation p.A137T 0.31 tolerated(0.88) benign(0.001) TCGA-WX-AA44-01 1 53443897 53443897 C - SCP2 Frame_Shift_Del p.S228* 0.25 TCGA-WX-AA44-01 1 78105246 78105246 T C ZZZ3 5'UTR 0.38 TCGA-WX-AA44-01 1 94655721 94655721 C A ARHGAP29 Intron 0.09 TCGA-WX-AA44-01 20 17934754 17934754 G C SNX5 Missense_Mutation p.P92R 0.35 deleterious(0) probably_damaging(1) TCGA-WX-AA44-01 20 25755863 25755863 T C FAM182B Silent p.G31G 0.18 TCGA-WX-AA44-01 20 25755888 25755888 C G FAM182B Missense_Mutation p.C23S 0.13 tolerated_low_confidence(0.1) benign(0.3) TCGA-WX-AA44-01 20 37217066 37217066 G T ADIG 3'UTR 0.30 TCGA-WX-AA44-01 20 58564168 58564168 T C CDH26 Silent p.P411P 0.34 TCGA-WX-AA44-01 21 35473358 35473358 T G SLC5A3 3'UTR 0.06 TCGA-WX-AA44-01 21 42837831 42837831 T C TMPRSS2 3'UTR 0.36 TCGA-WX-AA44-01 21 9907263 9907263 A G TEKT4P2 RNA 0.50 TCGA-WX-AA44-01 2 10188153 10188153 C G KLF11 Missense_Mutation p.S230C 0.26 tolerated(0.11) possibly_damaging(0.872) TCGA-WX-AA44-01 2 158140942 158140942 G C GALNT5 Missense_Mutation p.D535H 0.29 deleterious(0) probably_damaging(0.997) TCGA-WX-AA44-01 2 162757594 162757594 T C SLC4A10 Intron 0.37 TCGA-WX-AA44-01 2 183703315 183703315 T A FRZB Nonsense_Mutation p.K207* 0.30 TCGA-WX-AA44-01 2 197010770 197010770 A C STK17B Silent p.G115G 0.30 TCGA-WX-AA44-01 2 222290755 222290755 G T EPHA4 Missense_Mutation p.P985H 0.25 tolerated(0.19) probably_damaging(0.99) TCGA-WX-AA44-01 2 44041621 44041621 G C ABCG5 Missense_Mutation p.T586S 0.26 tolerated(0.12) benign(0.057) TCGA-WX-AA44-01 2 89475847 89475847 C T IGKV2-24 Missense_Mutation p.G109R 0.32 deleterious(0.01) benign(0.287) TCGA-WX-AA44-01 3 129824431 129824431 G A FAM86HP RNA 0.31 TCGA-WX-AA44-01 3 14755616 14755616 C T C3orf20 Silent p.A421A 0.24 TCGA-WX-AA44-01 3 169840463 169840463 T G PHC3 Silent p.R620R 0.19 TCGA-WX-AA44-01 3 184429781 184429781 G A MAGEF1 5'UTR 0.20 TCGA-WX-AA44-01 3 33481287 33481287 G C UBP1 Missense_Mutation p.D18E 0.33 deleterious(0.03) benign(0.048) TCGA-WX-AA44-01 3 47049823 47049823 A G NBEAL2 Silent p.A2590A 0.27 TCGA-WX-AA44-01 3 48626421 48626421 C A COL7A1 Missense_Mutation p.E774D 0.24 unknown(0) TCGA-WX-AA44-01 3 50645277 50645277 G A CISH Missense_Mutation p.P197S 0.29 tolerated(0.14) benign(0.076) TCGA-WX-AA44-01 3 58631321 58631321 G T FAM3D Missense_Mutation p.P60T 0.32 tolerated(0.08) benign(0.049) TCGA-WX-AA44-01 3 89390994 89390994 C A EPHA3 Silent p.R354R 0.31 TCGA-WX-AA44-01 4 152021639 152021639 T C RPS3A Missense_Mutation p.V22A 0.15 tolerated(0.1) benign(0.199) TCGA-WX-AA44-01 4 155507395 155507395 C T FGA Missense_Mutation p.D396N 0.30 deleterious_low_confidence(0.02) benign(0.067) TCGA-WX-AA44-01 4 160259466 160259467 - ATTG RAPGEF2 Frame_Shift_Ins p.G554Dfs*9 0.26 TCGA-WX-AA44-01 4 20598095 20598095 T C SLIT2 Silent p.D1126D 0.09 TCGA-WX-AA44-01 4 87692453 87692453 T C PTPN13 Missense_Mutation p.S1650P 0.29 tolerated(0.05) benign(0.059) TCGA-WX-AA44-01 5 1295161 1295161 T G TERT 5'UTR 0.33 TCGA-WX-AA44-01 5 132149934 132149934 A T SOWAHA Silent p.A207A 0.38 TCGA-WX-AA44-01 5 140581863 140581863 T A PCDHB11 3'UTR 0.27 TCGA-WX-AA44-01 5 158697408 158697408 T G UBLCP1 Missense_Mutation p.V96G 0.44 deleterious(0) possibly_damaging(0.491) TCGA-WX-AA44-01 5 1878257 1878257 G A IRX4 Silent p.G462G 0.26 TCGA-WX-AA44-01 5 31538643 31538643 A G C5orf22 Silent p.P218P 0.39 TCGA-WX-AA44-01 5 43644303 43644303 C T NNT Missense_Mutation p.A325V 0.33 deleterious(0) probably_damaging(0.999) TCGA-WX-AA44-01 6 26376218 26376218 A T BTN3A2 Intron 0.30 TCGA-WX-AA44-01 6 31079972 31079972 G T C6orf15 Missense_Mutation p.P55H 0.32 tolerated(0.63) probably_damaging(0.979) TCGA-WX-AA44-01 6 31777778 31777778 G A HSPA1L 3'UTR 0.26 TCGA-WX-AA44-01 6 32917403 32917403 C T HLA-DMA Missense_Mutation p.A213T 0.20 tolerated(0.42) benign(0.03) TCGA-WX-AA44-01 6 33136316 33136316 G T COL11A2 Missense_Mutation p.P1228T 0.16 unknown(0) TCGA-WX-AA44-01 6 56917588 56917588 C A KIAA1586 Missense_Mutation p.H97Q 0.20 deleterious_low_confidence(0.01) benign(0.075) TCGA-WX-AA44-01 7 100184126 100184126 C T FBXO24 5'Flank 0.36 TCGA-WX-AA44-01 7 100488791 100488791 G A ACHE Silent p.T574T 0.04 TCGA-WX-AA44-01 7 100797700 100797700 G A AP1S1 5'UTR 0.22 TCGA-WX-AA44-01 7 117364621 117364621 T C CTTNBP2 Missense_Mutation p.K1476R 0.30 tolerated(0.15) benign(0.016) TCGA-WX-AA44-01 7 3998631 3998631 G A SDK1 Missense_Mutation p.G407R 0.36 deleterious(0.03) benign(0.019) TCGA-WX-AA44-01 7 47343131 47343131 A T TNS3 Silent p.V958V 0.12 TCGA-WX-AA44-01 7 48412063 48412063 A G ABCA13 Missense_Mutation p.N3701S 0.20 benign(0.21) TCGA-WX-AA44-01 7 77807384 77807384 T G MAGI2 Silent p.R783R 0.22 TCGA-WX-AA44-01 8 15601113 15601113 A G TUSC3 Missense_Mutation p.K310R 0.07 tolerated(0.17) possibly_damaging(0.579) TCGA-WX-AA44-01 9 131670444 131670444 T A LRRC8A Missense_Mutation p.L334H 0.10 deleterious(0.02) possibly_damaging(0.831) TCGA-WX-AA44-01 9 131866547 131866547 G A CRAT Silent p.Y110Y 0.27 TCGA-WX-AA44-01 9 139089248 139089248 C A LHX3 Missense_Mutation p.G378W 0.30 deleterious(0) probably_damaging(0.959) TCGA-WX-AA44-01 9 140127035 140127035 G A SLC34A3 Missense_Mutation p.V62M 0.09 tolerated(0.21) benign(0.002) TCGA-WX-AA44-01 9 5299951 5299951 T C RLN2 3'UTR 0.65 TCGA-WX-AA44-01 9 70919425 70919425 C A FOXD4L3 3'UTR 0.23 TCGA-WX-AA44-01 9 88938154 88938154 C A ZCCHC6 Missense_Mutation p.Q837H 0.32 tolerated(0.2) benign(0.002) TCGA-WX-AA44-01 9 95491346 95491346 T C BICD2 Missense_Mutation p.E138G 0.23 deleterious(0) possibly_damaging(0.794) TCGA-WX-AA44-01 X 102003676 102003676 C A BHLHB9 5'UTR 0.30 TCGA-WX-AA44-01 X 117819934 117819934 T A DOCK11 3'UTR 0.30 TCGA-WX-AA44-01 X 132160217 132160217 T A USP26 Missense_Mutation p.S678C 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-WX-AA44-01 X 142717487 142717487 A C SLITRK4 Missense_Mutation p.L480V 0.26 deleterious(0) probably_damaging(0.994) TCGA-WX-AA44-01 X 151909240 151909240 G T CSAG1 3'UTR 0.28 TCGA-WX-AA44-01 X 153171245 153171245 C T AVPR2 Silent p.P95P 0.38 TCGA-WX-AA44-01 X 50130552 50130552 T A DGKK Intron 0.30 TCGA-WX-AA44-01 X 70524435 70524435 C A ITGB1BP2 Missense_Mutation p.A266E 0.29 tolerated(0.88) benign(0.019) TCGA-WX-AA44-01 X 72667261 72667261 C A CDX4 Missense_Mutation p.H58N 0.27 deleterious(0.01) benign(0.197) TCGA-WX-AA46-01 10 1118109 1118109 G C WDR37 Missense_Mutation p.S5T 0.07 tolerated_low_confidence(0.24) possibly_damaging(0.827) TCGA-WX-AA46-01 10 118351992 118351992 G T PNLIPRP1 Missense_Mutation p.R90L 0.24 deleterious(0) probably_damaging(0.95) TCGA-WX-AA46-01 10 133769472 133769472 G A PPP2R2D 3'UTR 0.09 TCGA-WX-AA46-01 10 25888075 25888075 T A GPR158 Missense_Mutation p.W1174R 0.43 deleterious(0) benign(0.162) TCGA-WX-AA46-01 10 50285295 50285295 C T VSTM4 Nonsense_Mutation p.W201* 0.04 TCGA-WX-AA46-01 10 70775761 70775761 G C KIAA1279 Missense_Mutation p.M485I 0.05 deleterious(0.02) possibly_damaging(0.795) TCGA-WX-AA46-01 10 98741959 98741959 A G C10orf12 Missense_Mutation p.D271G 0.05 tolerated(0.12) possibly_damaging(0.628) TCGA-WX-AA46-01 11 130773190 130773190 G A SNX19 Nonsense_Mutation p.Q845* 0.04 TCGA-WX-AA46-01 11 130773191 130773191 C A SNX19 Missense_Mutation p.M844I 0.05 tolerated(1) benign(0.009) TCGA-WX-AA46-01 11 61183611 61183611 T C CPSF7 Missense_Mutation p.M354V 0.14 tolerated(0.29) benign(0.002) TCGA-WX-AA46-01 11 67191670 67191670 G A CARNS1 Missense_Mutation p.M817I 0.26 deleterious(0.01) possibly_damaging(0.523) TCGA-WX-AA46-01 11 88924399 88924399 C T TYR Silent p.N283N 0.32 TCGA-WX-AA46-01 12 122677539 122677539 G A LRRC43 Missense_Mutation p.C446Y 0.30 tolerated(0.1) benign(0.039) TCGA-WX-AA46-01 12 49374381 49374381 G A WNT1 Missense_Mutation p.R178H 0.19 tolerated(0.54) benign(0.018) TCGA-WX-AA46-01 12 56667010 56667010 T C CS Missense_Mutation p.Y420C 0.21 deleterious(0) probably_damaging(0.999) TCGA-WX-AA46-01 13 106124951 106124951 G A DAOA Silent p.E66E 0.24 TCGA-WX-AA46-01 13 111125290 111125290 C T COL4A2 Nonsense_Mutation p.R740* 0.07 TCGA-WX-AA46-01 13 33109968 33109968 T A N4BP2L2 Intron 0.06 TCGA-WX-AA46-01 13 36905735 36905735 T C SPG20 Splice_Site p.X271_splice 0.32 TCGA-WX-AA46-01 13 38153242 38153242 A G POSTN Missense_Mutation p.L603P 0.13 tolerated(0.19) probably_damaging(0.912) TCGA-WX-AA46-01 14 102356589 102356590 AG - PPP2R5C Frame_Shift_Del p.E247Afs*3 0.16 TCGA-WX-AA46-01 14 106209353 106209353 G T IGHG1 Missense_Mutation p.S19Y 0.32 deleterious(0) possibly_damaging(0.745) TCGA-WX-AA46-01 14 20692462 20692462 C A OR11H6 Missense_Mutation p.D198E 0.20 deleterious(0.01) probably_damaging(1) TCGA-WX-AA46-01 14 53175062 53175062 G T PSMC6 Nonsense_Mutation p.E55* 0.32 TCGA-WX-AA46-01 14 80328356 80328356 C T NRXN3 3'UTR 0.06 TCGA-WX-AA46-01 16 2025894 2025894 G T TBL3 Missense_Mutation p.C358F 0.17 tolerated(0.16) benign(0.078) TCGA-WX-AA46-01 16 2025898 2025898 A G TBL3 Silent p.L359L 0.17 TCGA-WX-AA46-01 16 50744626 50744626 C T NOD2 Silent p.P268P 0.06 TCGA-WX-AA46-01 16 56704900 56704900 G A MT1H Silent p.%3D 0.17 TCGA-WX-AA46-01 16 64984667 64984667 T C CDH11 Intron 0.13 TCGA-WX-AA46-01 16 71601983 71601983 G C TAT 3'UTR 0.06 TCGA-WX-AA46-01 17 30771555 30771555 C T PSMD11 Missense_Mutation p.A5V 0.03 tolerated(0.24) benign(0.087) TCGA-WX-AA46-01 17 56604304 56604304 T A SEPT4 Silent p.G47G 0.24 TCGA-WX-AA46-01 17 57724931 57724931 G A CLTC Missense_Mutation p.M141I 0.07 tolerated(0.47) benign(0.002) TCGA-WX-AA46-01 17 64128831 64128831 G T CEP112 Missense_Mutation p.P174Q 0.04 tolerated(0.06) possibly_damaging(0.65) TCGA-WX-AA46-01 18 48510826 48510826 T G ELAC1 Missense_Mutation p.F173C 0.09 deleterious(0) probably_damaging(0.926) TCGA-WX-AA46-01 18 61323171 61323171 G A SERPINB3 Missense_Mutation p.T298M 0.16 tolerated(0.26) benign(0.317) TCGA-WX-AA46-01 18 72344756 72344756 C G ZNF407 Nonsense_Mutation p.S594* 0.06 TCGA-WX-AA46-01 19 38713312 38713312 G C DPF1 Missense_Mutation p.H49Q 0.18 tolerated(0.58) benign(0.343) TCGA-WX-AA46-01 19 40023135 40023135 C A EID2B Missense_Mutation p.S103I 0.09 tolerated(0.08) benign(0.059) TCGA-WX-AA46-01 19 9958913 9958913 C G PIN1 Intron 0.40 TCGA-WX-AA46-01 1 103455118 103455118 C A COL11A1 Missense_Mutation p.G784C 0.29 unknown(0) TCGA-WX-AA46-01 1 108138911 108138911 A G VAV3 Missense_Mutation p.L758S 0.38 deleterious(0) probably_damaging(1) TCGA-WX-AA46-01 1 145522971 145522971 G T PEX11B 3'UTR 0.09 TCGA-WX-AA46-01 1 205036323 205036323 T G CNTN2 Missense_Mutation p.I690M 0.07 tolerated(0.06) probably_damaging(1) TCGA-WX-AA46-01 1 224586292 224586292 T C WDR26 Silent p.V523V 0.02 TCGA-WX-AA46-01 1 231664533 231664533 C T TSNAX 5'UTR 0.08 TCGA-WX-AA46-01 1 32157042 32157042 A G COL16A1 Silent p.P458P 0.33 TCGA-WX-AA46-01 1 3712675 3712675 G T LRRC47 Silent p.P122P 0.05 TCGA-WX-AA46-01 1 45266825 45266825 G T PLK3 Splice_Site p.X145_splice 0.04 TCGA-WX-AA46-01 1 79107135 79107135 A G IFI44L Missense_Mutation p.K389E 0.05 tolerated(0.12) benign(0.168) TCGA-WX-AA46-01 20 3897669 3897669 C T PANK2 Missense_Mutation p.S503L 0.19 deleterious(0.03) probably_damaging(0.965) TCGA-WX-AA46-01 20 61491546 61491546 T C TCFL5 Silent p.Q254Q 0.18 TCGA-WX-AA46-01 22 22892709 22892709 T C PRAME Missense_Mutation p.D131G 0.36 deleterious(0.03) benign(0.373) TCGA-WX-AA46-01 22 29727788 29727788 C G AP1B1 Silent p.L809L 0.13 TCGA-WX-AA46-01 22 32909790 32909790 G T SYN3 Missense_Mutation p.N544K 0.04 deleterious(0) probably_damaging(0.997) TCGA-WX-AA46-01 2 179433556 179433556 A C TTN Missense_Mutation p.L25768R 0.09 TCGA-WX-AA46-01 2 232262492 232262492 C T B3GNT7 Missense_Mutation p.A21V 0.07 deleterious(0.02) benign(0.219) TCGA-WX-AA46-01 2 233274402 233274402 G T ALPPL2 Missense_Mutation p.E473D 0.06 deleterious(0.01) possibly_damaging(0.731) TCGA-WX-AA46-01 3 185644397 185644397 A T TRA2B Silent p.S54S 0.10 TCGA-WX-AA46-01 3 9781391 9781391 C G BRPF1 Missense_Mutation p.F436L 0.06 deleterious(0.02) probably_damaging(0.979) TCGA-WX-AA46-01 4 155525436 155525436 A C FGG 3'Flank 0.07 TCGA-WX-AA46-01 4 71467282 71467282 A G AMBN Missense_Mutation p.I148V 0.06 tolerated(0.78) benign(0.011) TCGA-WX-AA46-01 4 89198246 89198246 C T PPM1K Intron 0.33 TCGA-WX-AA46-01 5 127625583 127625583 T C FBN2 Missense_Mutation p.T2168A 0.02 tolerated(0.19) benign(0.009) TCGA-WX-AA46-01 5 133316637 133316637 C G VDAC1 Missense_Mutation p.A112P 0.15 deleterious(0.01) possibly_damaging(0.884) TCGA-WX-AA46-01 5 139907597 139907597 A T ANKHD1 Missense_Mutation p.I1743F 0.03 probably_damaging(0.997) TCGA-WX-AA46-01 5 148617156 148617156 G A ABLIM3 Missense_Mutation p.G345D 0.10 deleterious(0.01) benign(0.027) TCGA-WX-AA46-01 5 78281247 78281247 G A ARSB 5'UTR 0.46 TCGA-WX-AA46-01 6 111196314 111196314 A G AMD1 Silent p.E2E 0.16 TCGA-WX-AA46-01 6 131941772 131941772 T C MED23 Missense_Mutation p.H198R 0.13 deleterious(0.04) probably_damaging(0.969) TCGA-WX-AA46-01 6 158571489 158571489 A C SERAC1 Missense_Mutation p.N87K 0.08 tolerated(0.26) benign(0.034) TCGA-WX-AA46-01 6 170103214 170103214 G T C6orf120 3'UTR 0.22 TCGA-WX-AA46-01 6 43305119 43305119 C T ZNF318 Missense_Mutation p.G2206E 0.09 benign(0.117) TCGA-WX-AA46-01 6 43499278 43499278 G A XPO5 Missense_Mutation p.P827S 0.04 deleterious(0.01) possibly_damaging(0.786) TCGA-WX-AA46-01 6 7899894 7899894 C A TXNDC5 Missense_Mutation p.G145V 0.22 deleterious(0) probably_damaging(0.985) TCGA-WX-AA46-01 7 134136358 134136358 C A AKR1B1 Nonsense_Mutation p.E72* 0.39 TCGA-WX-AA46-01 7 27196255 27196255 C T HOXA7 5'UTR 0.14 TCGA-WX-AA46-01 7 28547252 28547252 C T CREB5 Missense_Mutation p.T63M 0.08 deleterious(0) probably_damaging(0.992) TCGA-WX-AA46-01 7 63537704 63537704 G T ZNF727 Missense_Mutation p.D93Y 0.10 deleterious(0.04) probably_damaging(0.995) TCGA-WX-AA46-01 8 11177357 11177357 G T MTMR9 Intron 0.05 TCGA-WX-AA46-01 8 116635869 116635869 C T TRPS1 5'UTR 0.11 TCGA-WX-AA46-01 8 139144954 139144954 T G FAM135B Missense_Mutation p.H1368P 0.05 deleterious(0) possibly_damaging(0.616) TCGA-WX-AA46-01 8 23058224 23058224 T C TNFRSF10A Missense_Mutation p.I227V 0.10 tolerated(0.09) benign(0.345) TCGA-WX-AA46-01 8 30974005 30974005 G T WRN Missense_Mutation p.R803S 0.17 deleterious(0) probably_damaging(1) TCGA-WX-AA46-01 8 41812897 41812897 T C KAT6A Silent p.Q505Q 0.12 TCGA-WX-AA46-01 8 48776027 48776027 T C PRKDC Missense_Mutation p.K1894E 0.10 benign(0.029) TCGA-WX-AA46-01 9 136501520 136501520 C T DBH Silent p.S9S 0.07 TCGA-WX-AA46-01 9 85597420 85597420 C A RASEF 3'UTR 0.62 TCGA-WX-AA46-01 X 101971439 101971439 C T GPRASP2 Nonsense_Mutation p.Q548* 0.04 TCGA-WX-AA46-01 X 123663789 123663789 G T TENM1 Missense_Mutation p.T899N 0.04 deleterious(0) benign(0.082) TCGA-WX-AA47-01 10 101292773 101292773 G T NKX2-3 5'UTR 0.51 TCGA-WX-AA47-01 11 123598282 123598282 T A ZNF202 Missense_Mutation p.D285V 0.45 deleterious(0.01) possibly_damaging(0.682) TCGA-WX-AA47-01 11 1244296 1244296 A G MUC5B 5'UTR 0.34 TCGA-WX-AA47-01 11 17099170 17099170 G A RPS13 Missense_Mutation p.P7S 0.47 tolerated(0.21) benign(0.177) TCGA-WX-AA47-01 11 209347 209347 C T RIC8A Intron 0.45 TCGA-WX-AA47-01 13 98896955 98896956 - T FARP1 Intron 0.25 TCGA-WX-AA47-01 14 21854025 21854025 T G CHD8 Missense_Mutation p.H2498P 0.40 tolerated_low_confidence(0.19) benign(0.227) TCGA-WX-AA47-01 14 61512090 61512090 T G SLC38A6 Silent p.A257A 0.04 TCGA-WX-AA47-01 16 31896500 31896500 C T ZNF267 Missense_Mutation p.P50L 0.05 tolerated(0.21) probably_damaging(0.995) TCGA-WX-AA47-01 16 67132744 67132744 A G CBFB 3'UTR 0.05 TCGA-WX-AA47-01 16 68598406 68598406 G C ZFP90 Missense_Mutation p.E572D 0.39 deleterious(0.01) possibly_damaging(0.904) TCGA-WX-AA47-01 16 72094725 72094725 A G HP Missense_Mutation p.Y386C 0.38 deleterious(0) probably_damaging(0.999) TCGA-WX-AA47-01 17 20768818 20768818 A G CCDC144NL Silent p.Y192Y 0.18 TCGA-WX-AA47-01 17 3629472 3629472 T C GSG2 Missense_Mutation p.L748P 0.04 deleterious(0) probably_damaging(1) TCGA-WX-AA47-01 19 13889093 13889093 G T C19orf53 3'UTR 0.23 TCGA-WX-AA47-01 19 46270086 46270086 G A SIX5 Silent p.A377A 0.37 TCGA-WX-AA47-01 19 58189641 58189641 G A ZSCAN4 Missense_Mutation p.E224K 0.43 tolerated(0.08) benign(0.076) TCGA-WX-AA47-01 19 9204711 9204711 C T OR1M1 Missense_Mutation p.S264L 0.08 deleterious(0.02) probably_damaging(0.936) TCGA-WX-AA47-01 1 145562472 145562472 C T ANKRD35 Silent p.S720S 0.27 TCGA-WX-AA47-01 1 155640243 155640243 G C YY1AP1 Missense_Mutation p.P337R 0.27 deleterious(0) possibly_damaging(0.8) TCGA-WX-AA47-01 1 201837806 201837806 T C IPO9 Missense_Mutation p.I629T 0.05 deleterious(0) benign(0.342) TCGA-WX-AA47-01 1 228593928 228593928 G A TRIM11 Missense_Mutation p.A112V 0.10 tolerated(1) benign(0.001) TCGA-WX-AA47-01 1 233489695 233489695 A G MLK4 Missense_Mutation p.M377V 0.60 deleterious(0.02) probably_damaging(0.944) TCGA-WX-AA47-01 1 34209061 34209061 C G CSMD2 Missense_Mutation p.V625L 0.32 tolerated(0.49) benign(0.079) TCGA-WX-AA47-01 1 86200503 86200503 T A COL24A1 Nonsense_Mutation p.K1643* 0.37 TCGA-WX-AA47-01 20 33117703 33117703 G A DYNLRB1 Intron 0.47 TCGA-WX-AA47-01 20 57899428 57899428 C T EDN3 Missense_Mutation p.H211Y 0.46 tolerated_low_confidence(0.07) benign(0.158) TCGA-WX-AA47-01 22 45937218 45937218 C T FBLN1 Silent p.G344G 0.37 TCGA-WX-AA47-01 22 46930896 46930896 G A CELSR1 Silent p.L724L 0.42 TCGA-WX-AA47-01 22 50718956 50718956 C G PLXNB2 Missense_Mutation p.Q1379H 0.31 deleterious(0.01) probably_damaging(0.941) TCGA-WX-AA47-01 2 201726515 201726515 C G CLK1 Missense_Mutation p.S66T 0.44 tolerated_low_confidence(0.41) benign(0.018) TCGA-WX-AA47-01 2 220087067 220087067 G C ATG9A Missense_Mutation p.L652V 0.29 tolerated(0.15) probably_damaging(0.996) TCGA-WX-AA47-01 2 238972995 238972995 C T SCLY Intron 0.52 TCGA-WX-AA47-01 2 27849931 27849931 T A CCDC121 Nonsense_Mutation p.R408* 0.44 TCGA-WX-AA47-01 2 39452979 39452979 C - CDKL4 Splice_Site p.X97_splice 0.26 TCGA-WX-AA47-01 3 180328329 180328329 A G TTC14 Silent p.%3D 0.49 TCGA-WX-AA47-01 3 196387632 196387632 A G NRROS Missense_Mutation p.E373G 0.47 deleterious(0.03) possibly_damaging(0.543) TCGA-WX-AA47-01 3 196612404 196612404 A G SENP5 Missense_Mutation p.K118E 0.35 deleterious_low_confidence(0.01) benign(0.146) TCGA-WX-AA47-01 3 32933440 32933440 A T TRIM71 3'UTR 0.16 TCGA-WX-AA47-01 3 38797307 38797307 C A SCN10A Missense_Mutation p.R478L 0.41 tolerated(0.15) benign(0.031) TCGA-WX-AA47-01 3 41266136 41266136 T C CTNNB1 Missense_Mutation p.S45P 0.46 deleterious(0) probably_damaging(0.939) TCGA-WX-AA47-01 4 104065618 104065618 T C CENPE Missense_Mutation p.Q1672R 0.41 possibly_damaging(0.905) TCGA-WX-AA47-01 4 49005762 49005762 A G CWH43 Silent p.S271S 0.43 TCGA-WX-AA47-01 4 69696589 69696589 A G UGT2B10 Missense_Mutation p.R527G 0.05 deleterious(0.03) benign(0.097) TCGA-WX-AA47-01 5 17275402 17275403 - CGAGGGCG BASP1 Frame_Shift_Ins p.A30Rfs*197 0.15 TCGA-WX-AA47-01 5 175786886 175786886 T C KIAA1191 5'UTR 0.44 TCGA-WX-AA47-01 5 175798739 175798739 C T ARL10 Silent p.A192A 0.06 TCGA-WX-AA47-01 5 55260054 55260065 TTGACAAAATAC - IL6ST In_Frame_Del p.Y190_N193del 0.43 TCGA-WX-AA47-01 5 64976566 64976566 C T SGTB Missense_Mutation p.A179T 0.07 deleterious(0) probably_damaging(0.998) TCGA-WX-AA47-01 5 83239159 83239159 C A EDIL3 3'UTR 0.65 TCGA-WX-AA47-01 6 123785948 123785948 T C TRDN Intron 0.36 TCGA-WX-AA47-01 6 33162491 33162491 C A RXRB Nonsense_Mutation p.E528* 0.50 TCGA-WX-AA47-01 6 46721610 46721610 C A ANKRD66 Silent p.A160A 0.32 TCGA-WX-AA47-01 7 90895843 90895843 A G FZD1 Missense_Mutation p.I550V 0.47 tolerated(0.4) benign(0.241) TCGA-WX-AA47-01 9 130550509 130550509 T C CDK9 Missense_Mutation p.M150T 0.35 deleterious(0) probably_damaging(0.989) TCGA-WX-AA47-01 9 37746177 37746177 C A FRMPD1 Missense_Mutation p.A1383D 0.46 tolerated(0.09) benign(0.398) TCGA-WX-AA47-01 9 713335 713335 T G KANK1 Missense_Mutation p.S857A 0.37 deleterious(0.04) benign(0.049) TCGA-WX-AA47-01 X 47483694 47483694 G T CFP Missense_Mutation p.P464T 0.42 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-WX-AA47-01 X 67938119 67938126 TGGGCCCA - STARD8 Frame_Shift_Del p.W455Gfs*2 0.34 TCGA-WX-AA47-01 X 8504916 8504916 C T KAL1 Missense_Mutation p.R506Q 0.39 tolerated(0.41) benign(0.002) TCGA-XR-A8TC-01 10 44880397 44880397 G C CXCL12 Missense_Mutation p.S19R 0.43 tolerated(0.1) possibly_damaging(0.865) TCGA-XR-A8TC-01 10 5042405 5042405 A G AKR1C2 Intron 0.41 TCGA-XR-A8TC-01 10 56077084 56077084 G T PCDH15 Missense_Mutation p.R275S 0.26 deleterious(0.02) probably_damaging(0.978) TCGA-XR-A8TC-01 10 71835496 71835496 C G H2AFY2 Missense_Mutation p.L28V 0.61 tolerated(0.34) benign(0.084) TCGA-XR-A8TC-01 11 122776082 122776082 A T C11orf63 Intron 0.46 TCGA-XR-A8TC-01 11 124644780 124644780 C A MSANTD2 Intron 0.09 TCGA-XR-A8TC-01 11 1282675 1282675 G A MUC5B Missense_Mutation p.R5709Q 0.47 unknown(0) TCGA-XR-A8TC-01 11 67209971 67209971 G C CORO1B Silent p.V43V 0.39 TCGA-XR-A8TC-01 11 8734241 8734241 G A ST5 Missense_Mutation p.R677C 0.22 deleterious(0) benign(0.091) TCGA-XR-A8TC-01 12 104056724 104056724 T C STAB2 Missense_Mutation p.I657T 0.63 deleterious(0) probably_damaging(0.996) TCGA-XR-A8TC-01 12 113600779 113600779 T C DDX54 Missense_Mutation p.D718G 0.10 deleterious(0) probably_damaging(0.996) TCGA-XR-A8TC-01 12 6701864 6701864 G C CHD4 Missense_Mutation p.F924L 0.45 deleterious(0.01) possibly_damaging(0.787) TCGA-XR-A8TC-01 13 51915403 51915403 T C SERPINE3 Missense_Mutation p.L59P 0.05 deleterious(0.01) probably_damaging(0.968) TCGA-XR-A8TC-01 14 106586163 106586163 C AA IGHV3-13 Frame_Shift_Ins p.D108Lfs*? 0.29 TCGA-XR-A8TC-01 14 53360119 53360119 G C FERMT2 Missense_Mutation p.L140V 0.44 deleterious(0.02) probably_damaging(0.994) TCGA-XR-A8TC-01 14 60590986 60590986 T G PCNXL4 Silent p.V465V 0.31 TCGA-XR-A8TC-01 15 85656625 85656625 C G PDE8A Missense_Mutation p.H378D 0.45 deleterious(0.02) benign(0.15) TCGA-XR-A8TC-01 16 2043126 2043126 C G SYNGR3 3'UTR 0.88 TCGA-XR-A8TC-01 16 347849 347849 C A AXIN1 Nonsense_Mutation p.E553* 0.76 TCGA-XR-A8TC-01 17 32964541 32964541 G A TMEM132E Missense_Mutation p.A749T 0.33 tolerated(0.66) benign(0.007) TCGA-XR-A8TC-01 17 39506783 39506783 C A KRT33A Silent p.R79R 0.37 TCGA-XR-A8TC-01 17 42853002 42853002 C A ADAM11 Missense_Mutation p.H481Q 0.38 tolerated(0.55) benign(0.195) TCGA-XR-A8TC-01 17 46620730 46620730 G C HOXB2 Missense_Mutation p.S257R 0.41 tolerated(0.49) benign(0) TCGA-XR-A8TC-01 17 46799700 46799700 T C PRAC1 Missense_Mutation p.S19G 0.39 deleterious_low_confidence(0.03) benign(0.294) TCGA-XR-A8TC-01 17 72984049 72984049 G T CDR2L 5'UTR 0.59 TCGA-XR-A8TC-01 17 72984050 72984050 G T CDR2L 5'UTR 0.58 TCGA-XR-A8TC-01 17 73808617 73808617 G A UNK Silent p.A191A 0.45 TCGA-XR-A8TC-01 17 74449056 74449056 C G UBE2O Silent p.S56S 0.48 TCGA-XR-A8TC-01 17 78931502 78931502 G T RPTOR Missense_Mutation p.W1150L 0.41 deleterious(0) probably_damaging(0.998) TCGA-XR-A8TC-01 17 78931503 78931503 G T RPTOR Missense_Mutation p.W1150C 0.40 deleterious(0) probably_damaging(0.999) TCGA-XR-A8TC-01 18 74153457 74153457 G A ZNF516 Silent p.F518F 0.39 TCGA-XR-A8TC-01 19 23328562 23328562 G T ZNF730 Missense_Mutation p.W239L 0.27 tolerated(0.68) benign(0.094) TCGA-XR-A8TC-01 19 23328563 23328563 G T ZNF730 Missense_Mutation p.W239C 0.27 tolerated(0.19) possibly_damaging(0.674) TCGA-XR-A8TC-01 19 30054822 30054822 G C VSTM2B Missense_Mutation p.R280P 0.16 tolerated_low_confidence(0.3) benign(0.063) TCGA-XR-A8TC-01 19 45867148 45867148 C G ERCC2 Missense_Mutation p.R324P 0.54 deleterious(0.01) probably_damaging(1) TCGA-XR-A8TC-01 19 55106145 55106145 C T LILRA1 Missense_Mutation p.P29L 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-XR-A8TC-01 19 56515393 56515393 C T NLRP5 Missense_Mutation p.T125M 0.14 tolerated(0.32) benign(0.035) TCGA-XR-A8TC-01 1 110034053 110034053 G A ATXN7L2 Missense_Mutation p.R623Q 0.62 tolerated_low_confidence(0.05) probably_damaging(0.946) TCGA-XR-A8TC-01 1 150705370 150705370 C A CTSS 3'UTR 0.20 TCGA-XR-A8TC-01 1 150705371 150705371 C A CTSS 3'UTR 0.23 TCGA-XR-A8TC-01 1 168074111 168074111 G T GPR161 Missense_Mutation p.T13N 0.30 tolerated_low_confidence(0.1) benign(0.022) TCGA-XR-A8TC-01 1 171289026 171289026 G A FMO4 Missense_Mutation p.C21Y 0.50 deleterious(0) probably_damaging(1) TCGA-XR-A8TC-01 1 174417781 174417781 T C GPR52 Missense_Mutation p.F178L 0.17 tolerated(0.49) benign(0.174) TCGA-XR-A8TC-01 1 201438282 201438282 G A PHLDA3 5'UTR 0.15 TCGA-XR-A8TC-01 1 212161330 212161330 C T INTS7 Missense_Mutation p.A299T 0.25 tolerated(0.72) benign(0.279) TCGA-XR-A8TC-01 1 227300124 227300124 C T CDC42BPA Splice_Site p.X631_splice 0.22 TCGA-XR-A8TC-01 1 59248841 59248841 C A JUN 5'UTR 0.58 TCGA-XR-A8TC-01 1 62958432 62958432 G A DOCK7 Silent p.Y1737Y 0.75 TCGA-XR-A8TC-01 21 46875754 46875756 GAG - COL18A1 In_Frame_Del p.E105del 0.38 TCGA-XR-A8TC-01 22 30722679 30722679 C A TBC1D10A Silent p.S64S 0.49 TCGA-XR-A8TC-01 2 26416512 26416514 AGA GG HADHA Frame_Shift_Del p.V606Afs*14 0.23 TCGA-XR-A8TC-01 3 113890665 113890665 C A DRD3 Missense_Mutation p.A59S 0.43 tolerated(0.47) benign(0.007) TCGA-XR-A8TC-01 3 124237393 124237393 C T KALRN 3'UTR 0.27 TCGA-XR-A8TC-01 4 26483375 26483375 G T CCKAR Missense_Mutation p.P391H 0.32 tolerated(0.17) possibly_damaging(0.491) TCGA-XR-A8TC-01 4 26483376 26483376 G T CCKAR Missense_Mutation p.P391T 0.33 tolerated(0.58) benign(0.13) TCGA-XR-A8TC-01 5 112162900 112162900 G A APC Missense_Mutation p.G502R 0.41 possibly_damaging(0.876) TCGA-XR-A8TC-01 5 112162901 112162901 G T APC Missense_Mutation p.G502V 0.41 possibly_damaging(0.513) TCGA-XR-A8TC-01 5 75991366 75991366 G C IQGAP2 Missense_Mutation p.E1361Q 0.42 tolerated(0.23) benign(0.014) TCGA-XR-A8TC-01 6 157100005 157100005 C A ARID1B Silent p.G314G 0.04 TCGA-XR-A8TC-01 6 32369565 32369565 G T BTNL2 Missense_Mutation p.L243M 0.08 tolerated(0.22) benign(0.098) TCGA-XR-A8TC-01 6 36652015 36652015 G T CDKN1A Missense_Mutation p.R46L 0.54 deleterious(0.02) benign(0.41) TCGA-XR-A8TC-01 7 127964620 127964620 C A RBM28 Missense_Mutation p.R444L 0.33 deleterious(0) probably_damaging(0.998) TCGA-XR-A8TC-01 8 110394800 110394800 C T PKHD1L1 Silent p.N139N 0.58 TCGA-XR-A8TC-01 8 38146244 38146244 G A WHSC1L1 Nonsense_Mutation p.Q1088* 0.32 TCGA-XR-A8TC-01 8 39468107 39468107 G T ADAM18 Missense_Mutation p.R135I 0.06 tolerated(0.2) possibly_damaging(0.878) TCGA-XR-A8TC-01 8 99608325 99608325 C T STK3 Missense_Mutation p.D281N 0.28 tolerated(0.14) benign(0.308) TCGA-XR-A8TC-01 9 100823187 100823187 C T NANS Nonsense_Mutation p.R86* 0.38 TCGA-XR-A8TC-01 9 130104554 130104554 C T GARNL3 Missense_Mutation p.R398C 0.38 deleterious(0) probably_damaging(0.965) TCGA-XR-A8TC-01 9 134323075 134323075 G A PRRC2B Missense_Mutation p.R335H 0.43 deleterious(0.01) probably_damaging(0.973) TCGA-XR-A8TC-01 9 2718363 2718363 C T KCNV2 Silent p.D208D 0.44 TCGA-XR-A8TC-01 9 38413247 38413247 G A IGFBPL1 Missense_Mutation p.T225M 0.05 deleterious(0) probably_damaging(0.995) TCGA-XR-A8TC-01 9 396879 396879 C T DOCK8 Missense_Mutation p.T1022I 0.35 deleterious(0) probably_damaging(0.987) TCGA-XR-A8TC-01 X 48558697 48558697 G C SUV39H1 Silent p.A127A 0.42 TCGA-XR-A8TC-01 X 49020180 49020180 G A MAGIX Missense_Mutation p.A37T 0.19 deleterious(0) benign(0.278) TCGA-XR-A8TC-01 X 64141834 64141834 G A ZC4H2 Missense_Mutation p.R30C 0.41 deleterious(0) probably_damaging(0.947) TCGA-XR-A8TC-01 X 65242305 65242305 T A VSIG4 Missense_Mutation p.M334L 0.24 tolerated(0.59) benign(0.007) TCGA-XR-A8TD-01 10 24816985 24816985 A T KIAA1217 Missense_Mutation p.M1007L 0.22 tolerated(0.08) probably_damaging(0.924) TCGA-XR-A8TD-01 10 42833426 42833426 C A RP11-313J2.1 RNA 0.21 TCGA-XR-A8TD-01 11 123886314 123886314 C T OR10G4 Silent p.I11I 0.27 TCGA-XR-A8TD-01 11 5020793 5020793 C G OR51L1 Missense_Mutation p.A194G 0.18 tolerated(0.05) probably_damaging(0.959) TCGA-XR-A8TD-01 11 6221115 6221115 G T OR52W1 Missense_Mutation p.G221V 0.27 tolerated(1) possibly_damaging(0.691) TCGA-XR-A8TD-01 11 65380603 65380603 G A MAP3K11 Missense_Mutation p.R209C 0.19 deleterious(0) probably_damaging(0.993) TCGA-XR-A8TD-01 12 40076537 40076537 G T C12orf40 Missense_Mutation p.G271W 0.16 deleterious(0) probably_damaging(0.954) TCGA-XR-A8TD-01 12 46254732 46254732 A C ARID2 Missense_Mutation p.K1641T 0.24 deleterious(0.04) probably_damaging(0.918) TCGA-XR-A8TD-01 12 54910690 54910690 C T NCKAP1L Missense_Mutation p.H337Y 0.25 deleterious(0.02) benign(0.309) TCGA-XR-A8TD-01 12 78553012 78553012 C A NAV3 Missense_Mutation p.S1605R 0.22 deleterious(0) possibly_damaging(0.662) TCGA-XR-A8TD-01 15 40265137 40265137 T G EIF2AK4 Missense_Mutation p.W528G 0.17 deleterious(0) probably_damaging(0.944) TCGA-XR-A8TD-01 15 40265138 40265138 G T EIF2AK4 Missense_Mutation p.W528L 0.18 tolerated(0.06) possibly_damaging(0.474) TCGA-XR-A8TD-01 15 63011973 63011973 C A TLN2 Missense_Mutation p.A962D 0.35 deleterious(0.05) benign(0.04) TCGA-XR-A8TD-01 15 65472498 65472498 C T CLPX Missense_Mutation p.G42R 0.25 tolerated_low_confidence(0.12) benign(0.018) TCGA-XR-A8TD-01 15 75641582 75641582 A G NEIL1 Silent p.L112L 0.31 TCGA-XR-A8TD-01 17 54535228 54535228 C T ANKFN1 Missense_Mutation p.S485F 0.28 deleterious(0) possibly_damaging(0.896) TCGA-XR-A8TD-01 17 55182885 55182885 C T AKAP1 Silent p.L20L 0.19 TCGA-XR-A8TD-01 17 60024360 60024360 C A MED13 Missense_Mutation p.V2104L 0.18 deleterious(0.03) probably_damaging(0.976) TCGA-XR-A8TD-01 17 9808574 9808574 G A RCVRN 5'UTR 0.12 TCGA-XR-A8TD-01 18 30847217 30847217 T G CCDC178 Missense_Mutation p.Q407H 0.26 deleterious(0.04) possibly_damaging(0.672) TCGA-XR-A8TD-01 18 54687994 54687994 G A WDR7 Missense_Mutation p.G1395R 0.22 deleterious(0.01) probably_damaging(1) TCGA-XR-A8TD-01 18 76753074 76753074 G A SALL3 Silent p.P361P 0.24 TCGA-XR-A8TD-01 19 10097061 10097061 C A COL5A3 Missense_Mutation p.G761V 0.12 unknown(0) TCGA-XR-A8TD-01 19 31048062 31048062 A T ZNF536 Splice_Site p.X1299_splice 0.23 TCGA-XR-A8TD-01 19 52887731 52887731 G A ZNF880 Missense_Mutation p.E300K 0.13 deleterious(0.05) possibly_damaging(0.462) TCGA-XR-A8TD-01 19 56028927 56028927 C T SSC5D Missense_Mutation p.P1095L 0.41 benign(0.039) TCGA-XR-A8TD-01 19 58048954 58048954 C T ZNF549 Silent p.I194I 0.18 TCGA-XR-A8TD-01 1 158449910 158449910 C A OR10R2 Missense_Mutation p.F81L 0.31 tolerated(0.17) benign(0.206) TCGA-XR-A8TD-01 1 171605553 171605553 T G MYOC Missense_Mutation p.T343P 0.19 deleterious(0.01) possibly_damaging(0.908) TCGA-XR-A8TD-01 1 192613528 192613528 A G RGS13 Missense_Mutation p.N22D 0.35 tolerated(0.11) benign(0.001) TCGA-XR-A8TD-01 1 217856682 217856682 C T SPATA17 Missense_Mutation p.S125L 0.18 deleterious(0.01) benign(0.011) TCGA-XR-A8TD-01 1 4829928 4829928 A G AJAP1 Missense_Mutation p.Q282R 0.19 deleterious(0) benign(0.021) TCGA-XR-A8TD-01 20 3684557 3684557 G A SIGLEC1 Silent p.A296A 0.17 TCGA-XR-A8TD-01 20 43882264 43882264 C T SLPI Missense_Mutation p.D66N 0.14 tolerated(0.09) benign(0.114) TCGA-XR-A8TD-01 22 24492014 24492014 G A CABIN1 Missense_Mutation p.E1303K 0.36 tolerated(0.08) benign(0.069) TCGA-XR-A8TD-01 2 234355412 234355412 C T DGKD Silent p.T463T 0.34 TCGA-XR-A8TD-01 2 43801925 43801925 C A THADA Nonsense_Mutation p.E427* 0.23 TCGA-XR-A8TD-01 2 43801926 43801926 C A THADA Silent p.V426V 0.23 TCGA-XR-A8TD-01 2 71212146 71212146 C T ANKRD53 Missense_Mutation p.H437Y 0.19 tolerated(0.77) benign(0.016) TCGA-XR-A8TD-01 2 85604495 85604495 C T ELMOD3 Silent p.G212G 0.16 TCGA-XR-A8TD-01 3 132061467 132061467 C A ACPP Silent p.V209V 0.16 TCGA-XR-A8TD-01 3 173998485 173998485 T G NLGN1 Missense_Mutation p.Y622D 0.23 tolerated(0.07) benign(0.341) TCGA-XR-A8TD-01 3 44286265 44286265 C A TOPAZ1 Missense_Mutation p.A756D 0.21 tolerated(0.16) possibly_damaging(0.687) TCGA-XR-A8TD-01 4 122743628 122743628 A C CCNA2 Missense_Mutation p.N129K 0.10 tolerated(0.4) benign(0.007) TCGA-XR-A8TD-01 4 144135474 144135474 A G USP38 Missense_Mutation p.D782G 0.22 deleterious(0) probably_damaging(0.967) TCGA-XR-A8TD-01 4 167675697 167675697 G T SPOCK3 Missense_Mutation p.S301Y 0.13 deleterious(0) probably_damaging(0.996) TCGA-XR-A8TD-01 4 173734692 173734692 C G GALNTL6 Missense_Mutation p.N247K 0.20 deleterious(0.01) benign(0.36) TCGA-XR-A8TD-01 5 140182420 140182420 C A PCDHA3 Silent p.G546G 0.24 TCGA-XR-A8TD-01 5 5463128 5463128 A G KIAA0947 Silent p.E1227E 0.25 TCGA-XR-A8TD-01 5 68805179 68805179 G T OCLN Missense_Mutation p.A88S 0.18 deleterious(0.03) benign(0.403) TCGA-XR-A8TD-01 6 35255438 35255438 G A ZNF76 Missense_Mutation p.S83N 0.31 tolerated(0.14) benign(0.003) TCGA-XR-A8TD-01 6 36652098 36652098 C - CDKN1A Frame_Shift_Del p.K75Sfs*73 0.29 TCGA-XR-A8TD-01 6 43026951 43026951 C G MRPL2 Intron 0.22 TCGA-XR-A8TD-01 6 66204853 66204853 C A EYS Missense_Mutation p.V151F 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.448) TCGA-XR-A8TD-01 6 70070994 70070994 T A BAI3 Missense_Mutation p.L1277M 0.30 tolerated(0.33) benign(0.006) TCGA-XR-A8TD-01 6 93955017 93955017 C A EPHA7 Nonsense_Mutation p.E961* 0.30 TCGA-XR-A8TD-01 7 1131626 1131626 C T GPER1 Missense_Mutation p.R88C 0.32 tolerated(0.1) probably_damaging(0.996) TCGA-XR-A8TD-01 7 117879966 117879966 G A ANKRD7 Missense_Mutation p.R239K 0.31 tolerated(1) benign(0) TCGA-XR-A8TD-01 7 128454751 128454751 T C CCDC136 Silent p.D941D 0.20 TCGA-XR-A8TD-01 7 138764367 138764367 A C ZC3HAV1 Silent p.T440T 0.25 TCGA-XR-A8TD-01 7 140082352 140082352 T - SLC37A3 5'UTR 0.20 TCGA-XR-A8TD-01 7 42005709 42005709 C T GLI3 Missense_Mutation p.G988R 0.23 tolerated(0.26) benign(0.035) TCGA-XR-A8TD-01 8 39537657 39537657 G T ADAM18 Missense_Mutation p.C578F 0.25 deleterious(0) probably_damaging(1) TCGA-XR-A8TD-01 8 68208769 68208769 T C ARFGEF1 Missense_Mutation p.Y179C 0.26 deleterious(0) probably_damaging(0.996) TCGA-XR-A8TD-01 9 128434794 128434794 G A MAPKAP1 Silent p.T20T 0.20 TCGA-XR-A8TD-01 9 131484347 131484347 G C ZDHHC12 Missense_Mutation p.Q86E 0.20 tolerated(0.42) benign(0.089) TCGA-XR-A8TD-01 9 21187060 21187060 C T IFNA4 Silent p.K157K 0.15 TCGA-XR-A8TD-01 X 101826179 101826179 G T NXF4 RNA 0.24 TCGA-XR-A8TD-01 X 35988970 35988970 C T CXorf22 Missense_Mutation p.H634Y 0.21 deleterious(0) possibly_damaging(0.897) TCGA-XR-A8TD-01 X 37913602 37913602 C T SYTL5 Silent p.L86L 0.24 TCGA-XR-A8TD-01 X 53579402 53579402 G T HUWE1 Missense_Mutation p.S2917R 0.21 benign(0.307) TCGA-XR-A8TD-01 X 70146876 70146876 C A SLC7A3 Missense_Mutation p.Q434H 0.18 tolerated(0.05) benign(0.072) TCGA-XR-A8TD-01 X 75004916 75004916 A G MAGEE2 5'UTR 0.19 TCGA-XR-A8TE-01 11 1264386 1264386 C A MUC5B Silent p.P2092P 0.11 TCGA-XR-A8TE-01 11 26582625 26582625 C T MUC15 Missense_Mutation p.R358H 0.28 deleterious(0.05) benign(0.001) TCGA-XR-A8TE-01 11 59939536 59939536 C A MS4A6A 3'Flank 0.45 TCGA-XR-A8TE-01 11 61290591 61290591 C - SYT7 Frame_Shift_Del p.V430Sfs*27 0.23 TCGA-XR-A8TE-01 12 10603179 10603179 C A KLRC1 Splice_Site p.X63_splice 0.21 TCGA-XR-A8TE-01 13 108885203 108885203 A G ABHD13 3'UTR 0.37 TCGA-XR-A8TE-01 13 36805293 36805294 AA G CCDC169 Intron 0.34 TCGA-XR-A8TE-01 14 63179291 63179291 C T KCNH5 Intron 0.30 TCGA-XR-A8TE-01 16 71886604 71886604 T C ATXN1L 3'UTR 0.06 TCGA-XR-A8TE-01 17 40933030 40933030 C A WNK4 Missense_Mutation p.P105H 0.12 deleterious_low_confidence(0.04) unknown(0) TCGA-XR-A8TE-01 17 80391623 80391623 G A HEXDC Silent p.A124A 0.33 TCGA-XR-A8TE-01 19 8953859 8953859 G A MBD3L1 Missense_Mutation p.A169T 0.30 tolerated(0.06) benign(0.051) TCGA-XR-A8TE-01 1 175292473 175292473 G A TNR 3'UTR 0.49 TCGA-XR-A8TE-01 1 213061872 213061872 C T FLVCR1 Missense_Mutation p.A450V 0.05 deleterious(0) possibly_damaging(0.883) TCGA-XR-A8TE-01 21 11038891 11038891 G T BAGE2 RNA 0.04 TCGA-XR-A8TE-01 2 27850335 27850335 G T CCDC121 Missense_Mutation p.A273D 0.07 tolerated(0.08) benign(0.242) TCGA-XR-A8TE-01 2 29366594 29366594 C A CLIP4 Missense_Mutation p.P223H 0.43 deleterious(0) probably_damaging(0.954) TCGA-XR-A8TE-01 2 45235916 45235916 G A SIX2 Missense_Mutation p.R112C 0.05 deleterious(0) probably_damaging(1) TCGA-XR-A8TE-01 4 176556161 176556161 G A GPM6A Silent p.D244D 0.32 TCGA-XR-A8TE-01 4 90857798 90857798 G A MMRN1 Silent p.S989S 0.19 TCGA-XR-A8TE-01 7 127669904 127669904 C T LRRC4 Missense_Mutation p.G264R 0.22 deleterious(0) benign(0.282) TCGA-XR-A8TE-01 7 151945149 151945149 G T KMT2C Missense_Mutation p.D790E 0.04 benign(0.007) TCGA-XR-A8TE-01 7 17362177 17362177 A G AHR Silent p.R102R 0.04 TCGA-XR-A8TE-01 8 11301958 11301958 C A FAM167A 5'UTR 0.37 TCGA-XR-A8TE-01 8 56270341 56270341 A C XKR4 Missense_Mutation p.M304L 0.12 deleterious(0.02) benign(0.06) TCGA-XR-A8TE-01 9 80144156 80144156 A G GNA14 Silent p.S46S 0.14 TCGA-XR-A8TF-01 10 18254573 18254573 A T SLC39A12 Missense_Mutation p.E235D 0.50 tolerated(1) benign(0.004) TCGA-XR-A8TF-01 10 37507926 37507926 A T ANKRD30A Missense_Mutation p.N1040Y 0.48 deleterious(0.01) possibly_damaging(0.902) TCGA-XR-A8TF-01 10 63957897 63957897 T A RTKN2 Missense_Mutation p.S534C 0.38 deleterious(0.03) benign(0.01) TCGA-XR-A8TF-01 10 7409744 7409744 C A SFMBT2 Silent p.G101G 0.20 TCGA-XR-A8TF-01 10 99433466 99433492 TCAGAGCCGGAAGCCCTTCTTTTCATG GCA PI4K2A In_Frame_Del p.F439_W448delinsLQ 0.32 TCGA-XR-A8TF-01 11 102595576 102595576 A T MMP8 Missense_Mutation p.L4Q 0.34 deleterious(0) probably_damaging(0.995) TCGA-XR-A8TF-01 11 110450147 110450147 C G ARHGAP20 Missense_Mutation p.G1175R 0.49 tolerated_low_confidence(0.06) benign(0.013) TCGA-XR-A8TF-01 11 125472792 125472792 C T STT3A Silent p.L122L 0.22 TCGA-XR-A8TF-01 11 1785050 1785050 G A CTSD Silent p.L14L 0.67 TCGA-XR-A8TF-01 11 19735132 19735132 G A NAV2 5'Flank 0.05 TCGA-XR-A8TF-01 11 22396318 22396318 T A SLC17A6 Silent p.A353A 0.55 TCGA-XR-A8TF-01 11 3113775 3113775 C A OSBPL5 Missense_Mutation p.D716Y 0.35 deleterious(0) probably_damaging(0.986) TCGA-XR-A8TF-01 11 48510756 48510757 GT - OR4A47 Frame_Shift_Del p.V140Cfs*19 0.33 TCGA-XR-A8TF-01 12 100926383 100926383 A C NR1H4 Missense_Mutation p.Y208S 0.55 deleterious_low_confidence(0.02) benign(0.05) TCGA-XR-A8TF-01 12 102512142 102512142 T A NUP37 Missense_Mutation p.Q52L 0.35 deleterious(0.01) possibly_damaging(0.71) TCGA-XR-A8TF-01 12 110019202 110019202 C A MVK Missense_Mutation p.A125D 0.47 tolerated(0.67) benign(0) TCGA-XR-A8TF-01 12 110456257 110456257 A G ANKRD13A Missense_Mutation p.I170V 0.42 tolerated(0.05) benign(0.032) TCGA-XR-A8TF-01 12 112942513 112942513 G T PTPN11 Missense_Mutation p.S576I 0.43 deleterious_low_confidence(0.01) benign(0.158) TCGA-XR-A8TF-01 12 40938900 40938900 G C MUC19 Splice_Site 0.20 TCGA-XR-A8TF-01 12 4920532 4920532 G T KCNA6 Missense_Mutation p.C442F 0.26 deleterious(0) probably_damaging(0.999) TCGA-XR-A8TF-01 12 5024134 5024134 C T KCNA1 3'UTR 0.49 TCGA-XR-A8TF-01 12 53675324 53675324 C T ESPL1 Missense_Mutation p.H845Y 0.55 tolerated(0.07) benign(0.028) TCGA-XR-A8TF-01 12 6573670 6573670 G A VAMP1 Intron 0.22 TCGA-XR-A8TF-01 12 9027081 9027081 T A A2ML1 Missense_Mutation p.L1428M 0.40 deleterious(0) probably_damaging(1) TCGA-XR-A8TF-01 12 91348095 91348095 C T CCER1 Missense_Mutation p.R142H 0.46 tolerated(0.07) probably_damaging(0.923) TCGA-XR-A8TF-01 12 91357855 91357855 G T EPYC 3'UTR 0.49 TCGA-XR-A8TF-01 13 113826190 113826190 A G PROZ Missense_Mutation p.E347G 0.06 tolerated(0.11) benign(0.05) TCGA-XR-A8TF-01 13 36871783 36871783 A T CCDC169 Missense_Mutation p.V25D 0.59 deleterious(0.01) possibly_damaging(0.566) TCGA-XR-A8TF-01 13 37012886 37012886 A G CCNA1 Missense_Mutation p.K259E 0.43 deleterious(0) probably_damaging(0.928) TCGA-XR-A8TF-01 13 38159034 38159034 G T POSTN Silent p.L309L 0.51 TCGA-XR-A8TF-01 14 23444239 23444239 G A AJUBA Silent p.G438G 0.30 TCGA-XR-A8TF-01 14 31814462 31814462 T C HEATR5A Silent p.L670L 0.36 TCGA-XR-A8TF-01 14 39819413 39819413 T G CTAGE5 Missense_Mutation p.I792S 0.57 tolerated(0.19) benign(0.02) TCGA-XR-A8TF-01 14 86089243 86089243 T - FLRT2 Frame_Shift_Del p.V462Efs*9 0.33 TCGA-XR-A8TF-01 14 94088968 94088968 C A UNC79 Missense_Mutation p.P1620T 0.29 tolerated_low_confidence(0.13) benign(0.056) TCGA-XR-A8TF-01 15 20643882 20643882 C T HERC2P3 RNA 0.53 TCGA-XR-A8TF-01 15 31323191 31323191 A G TRPM1 Missense_Mutation p.I1058T 0.61 deleterious(0.04) benign(0.26) TCGA-XR-A8TF-01 15 45781158 45781158 C A SLC30A4 Missense_Mutation p.G259W 0.30 deleterious(0) possibly_damaging(0.735) TCGA-XR-A8TF-01 15 48829987 48829987 C T FBN1 Missense_Mutation p.C186Y 0.06 probably_damaging(0.998) TCGA-XR-A8TF-01 15 64455210 64455210 C G PPIB 5'UTR 0.25 TCGA-XR-A8TF-01 15 71124522 71124522 C T LARP6 Missense_Mutation p.G449S 0.34 tolerated(0.75) benign(0.007) TCGA-XR-A8TF-01 15 73541947 73541947 T G NEO1 Silent p.S593S 0.28 TCGA-XR-A8TF-01 15 75931953 75931953 C T IMP3 3'UTR 0.19 TCGA-XR-A8TF-01 15 79589227 79589227 T A ANKRD34C 3'UTR 0.53 TCGA-XR-A8TF-01 16 1129724 1129724 T C SSTR5 Missense_Mutation p.Y286H 0.47 deleterious(0.04) probably_damaging(0.999) TCGA-XR-A8TF-01 16 1990784 1990784 G C MSRB1 Missense_Mutation p.P105R 0.35 deleterious(0) probably_damaging(0.992) TCGA-XR-A8TF-01 16 27448987 27448987 A T IL21R Missense_Mutation p.S111C 0.52 deleterious(0.01) probably_damaging(0.957) TCGA-XR-A8TF-01 16 396840 396840 C A AXIN1 Missense_Mutation p.R62S 0.48 deleterious(0) probably_damaging(0.999) TCGA-XR-A8TF-01 16 48295405 48295405 A T LONP2 Missense_Mutation p.E265V 0.38 tolerated(0.05) possibly_damaging(0.828) TCGA-XR-A8TF-01 16 57062007 57062007 A G NLRC5 Missense_Mutation p.D700G 0.54 deleterious(0) probably_damaging(0.995) TCGA-XR-A8TF-01 16 68289238 68289238 G T PLA2G15 Missense_Mutation p.G153C 0.41 deleterious(0.02) possibly_damaging(0.907) TCGA-XR-A8TF-01 16 81185401 81185401 C T PKD1L2 RNA 0.47 TCGA-XR-A8TF-01 17 11593507 11593507 G A DNAH9 Silent p.R1456R 0.40 TCGA-XR-A8TF-01 17 11833232 11833232 A T DNAH9 Missense_Mutation p.E3976V 0.28 benign(0.133) TCGA-XR-A8TF-01 17 16704381 16704381 A G CCDC144A 3'UTR 0.44 TCGA-XR-A8TF-01 17 27047624 27047624 C A RPL23A Intron 0.37 TCGA-XR-A8TF-01 17 37791873 37791873 A T PPP1R1B Silent p.T153T 0.43 TCGA-XR-A8TF-01 17 38520920 38520920 G A CTD-2267D19.3 3'UTR 0.28 TCGA-XR-A8TF-01 17 39726458 39726458 T A KRT9 Silent p.T219T 0.30 TCGA-XR-A8TF-01 17 40330239 40330239 G T KCNH4 Missense_Mutation p.S155Y 0.61 tolerated(0.57) benign(0.379) TCGA-XR-A8TF-01 17 4857083 4857083 C T ENO3 Silent p.P129P 0.23 TCGA-XR-A8TF-01 17 7385340 7385340 T G SLC35G6 Missense_Mutation p.S13A 0.58 tolerated(0.69) benign(0.012) TCGA-XR-A8TF-01 17 7385382 7385382 T C SLC35G6 Missense_Mutation p.W27R 0.59 tolerated(0.37) benign(0.027) TCGA-XR-A8TF-01 17 76374876 76374894 CGCCAGCGCAGGAGGTGAG - PGS1 Splice_Site p.X44_splice 0.62 TCGA-XR-A8TF-01 18 14828293 14828293 A T ANKRD30B Silent p.V801V 0.35 TCGA-XR-A8TF-01 18 43462411 43462412 - A EPG5 Frame_Shift_Ins p.S1783Vfs*2 0.20 TCGA-XR-A8TF-01 18 64239248 64239248 T - CDH19 Frame_Shift_Del p.Q65Rfs*2 0.24 TCGA-XR-A8TF-01 19 17838628 17838629 AC - MAP1S Frame_Shift_Del p.T813Rfs*13 0.22 TCGA-XR-A8TF-01 19 17932271 17932271 A T INSL3 Silent p.P15P 0.53 TCGA-XR-A8TF-01 19 18092673 18092673 G T KCNN1 Silent p.A218A 0.29 TCGA-XR-A8TF-01 19 20228890 20228890 T A ZNF90 Missense_Mutation p.I176K 0.05 tolerated(1) benign(0.085) TCGA-XR-A8TF-01 19 2877959 2877959 A T ZNF556 Nonsense_Mutation p.R335* 0.54 TCGA-XR-A8TF-01 19 36166776 36166776 G T UPK1A Missense_Mutation p.W168L 0.28 deleterious(0) probably_damaging(0.965) TCGA-XR-A8TF-01 19 37117233 37117233 A G ZNF382 Missense_Mutation p.N145S 0.59 tolerated(0.86) benign(0.185) TCGA-XR-A8TF-01 19 3942230 3942230 A G NMRK2 Missense_Mutation p.R218G 0.33 tolerated_low_confidence(0.1) benign(0.001) TCGA-XR-A8TF-01 19 42507596 42507596 A T GRIK5 Missense_Mutation p.M801K 0.61 deleterious(0) benign(0.168) TCGA-XR-A8TF-01 19 53473210 53473210 C T ZNF702P RNA 0.31 TCGA-XR-A8TF-01 19 53884954 53884954 G C ZNF525 Missense_Mutation p.R374S 0.55 deleterious(0.02) benign(0.085) TCGA-XR-A8TF-01 19 53887408 53887408 G T ZNF525 3'UTR 0.19 TCGA-XR-A8TF-01 19 54393251 54393251 C T PRKCG Missense_Mutation p.A170V 0.23 tolerated(0.18) benign(0.001) TCGA-XR-A8TF-01 19 6755305 6755305 G C SH2D3A Missense_Mutation p.S173C 0.34 tolerated(0.09) benign(0.007) TCGA-XR-A8TF-01 19 9066432 9066432 A C MUC16 Missense_Mutation p.L7005W 0.31 unknown(0) TCGA-XR-A8TF-01 1 110466107 110466107 C T CSF1 Silent p.N288N 0.31 TCGA-XR-A8TF-01 1 115438077 115438077 A T SYCP1 Missense_Mutation p.T423S 0.62 tolerated(0.13) benign(0.016) TCGA-XR-A8TF-01 1 11561824 11561824 T A PTCHD2 Missense_Mutation p.S259T 0.07 tolerated(0.38) benign(0.398) TCGA-XR-A8TF-01 1 118640441 118640441 G A SPAG17 Missense_Mutation p.A288V 0.25 tolerated(0.14) benign(0.156) TCGA-XR-A8TF-01 1 145510975 145510975 C G RBM8A 3'UTR 0.34 TCGA-XR-A8TF-01 1 153941061 153941061 C T CREB3L4 Silent p.F20F 0.17 TCGA-XR-A8TF-01 1 154841900 154841900 T A KCNN3 Missense_Mutation p.S181C 0.43 deleterious(0) possibly_damaging(0.821) TCGA-XR-A8TF-01 1 156170105 156170105 A G SLC25A44 Missense_Mutation p.E156G 0.32 tolerated(0.37) benign(0.001) TCGA-XR-A8TF-01 1 157805704 157805704 T G CD5L Silent p.T99T 0.33 TCGA-XR-A8TF-01 1 17030633 17030633 C G ESPNP RNA 0.35 TCGA-XR-A8TF-01 1 206945657 206945657 G A IL10 Nonsense_Mutation p.R42* 0.47 TCGA-XR-A8TF-01 1 216850491 216850491 G C ESRRG Missense_Mutation p.D138E 0.35 deleterious(0.02) probably_damaging(0.995) TCGA-XR-A8TF-01 1 231344891 231344891 C T TRIM67 Missense_Mutation p.A673V 0.38 tolerated(0.49) benign(0.146) TCGA-XR-A8TF-01 1 240256430 240256430 G A FMN2 Missense_Mutation p.G341R 0.35 unknown(0) TCGA-XR-A8TF-01 1 248004949 248004949 T A OR11L1 Missense_Mutation p.N84Y 0.04 deleterious(0.02) possibly_damaging(0.635) TCGA-XR-A8TF-01 1 248616857 248616857 C T OR2T2 Silent p.Y253Y 0.57 TCGA-XR-A8TF-01 1 248737365 248737365 T A OR2T34 Missense_Mutation p.R232W 0.31 deleterious(0.02) probably_damaging(0.954) TCGA-XR-A8TF-01 1 27107072 27107095 TGGACATGATGCGGCGGGCTGCCC CA ARID1A Frame_Shift_Del p.V2228Afs*32 0.72 TCGA-XR-A8TF-01 1 52897111 52897111 G A ZCCHC11 Missense_Mutation p.P1429S 0.48 deleterious(0.02) probably_damaging(0.999) TCGA-XR-A8TF-01 1 98015193 98015193 C T DPYD Missense_Mutation p.V483I 0.28 tolerated(0.13) benign(0.006) TCGA-XR-A8TF-01 1 99157249 99157249 A T SNX7 Missense_Mutation p.Q211H 0.31 deleterious(0) possibly_damaging(0.801) TCGA-XR-A8TF-01 20 25062571 25062571 G A VSX1 Silent p.G54G 0.03 TCGA-XR-A8TF-01 20 3619493 3619493 C T ATRN Nonsense_Mutation p.Q1321* 0.44 TCGA-XR-A8TF-01 20 37647529 37647529 G C DHX35 Missense_Mutation p.M495I 0.51 tolerated(0.25) possibly_damaging(0.796) TCGA-XR-A8TF-01 20 60854388 60854388 C T OSBPL2 Silent p.L223L 0.43 TCGA-XR-A8TF-01 22 32266715 32266715 A C DEPDC5 Missense_Mutation p.N1148T 0.05 tolerated(0.6) benign(0.004) TCGA-XR-A8TF-01 22 38035775 38035775 G T SH3BP1 5'UTR 0.51 TCGA-XR-A8TF-01 22 38121212 38121212 C T TRIOBP Silent p.P883P 0.28 TCGA-XR-A8TF-01 22 38888102 38888102 G T DDX17 Missense_Mutation p.A469E 0.05 deleterious(0.01) probably_damaging(0.917) TCGA-XR-A8TF-01 22 50655465 50655465 C A SELO Missense_Mutation p.R585S 0.28 deleterious(0.02) benign(0.256) TCGA-XR-A8TF-01 2 103353153 103353153 G C MFSD9 Silent p.A39A 0.64 TCGA-XR-A8TF-01 2 11809668 11809668 C A NTSR2 Silent p.V196V 0.65 TCGA-XR-A8TF-01 2 11913854 11913854 G T LPIN1 Missense_Mutation p.E284D 0.33 tolerated(0.54) benign(0.008) TCGA-XR-A8TF-01 2 130832726 130832726 G T POTEF Missense_Mutation p.H773Q 0.24 deleterious_low_confidence(0.01) probably_damaging(0.927) TCGA-XR-A8TF-01 2 179399523 179399542 ATGTCAAAGTGTCCAATATT - TTN Frame_Shift_Del p.N33934* 0.27 TCGA-XR-A8TF-01 2 182468567 182468567 C T CERKL Missense_Mutation p.A160T 0.28 tolerated(0.52) benign(0.013) TCGA-XR-A8TF-01 2 207603174 207603174 C G MDH1B 3'UTR 0.07 TCGA-XR-A8TF-01 2 219447779 219447779 T C RQCD1 Missense_Mutation p.L97P 0.53 deleterious(0) probably_damaging(1) TCGA-XR-A8TF-01 2 228009257 228009257 A C COL4A4 Missense_Mutation p.L30R 0.59 probably_damaging(0.931) TCGA-XR-A8TF-01 2 27593519 27593519 C G SNX17 5'UTR 0.06 TCGA-XR-A8TF-01 2 55825633 55825633 T C SMEK2 Silent p.P280P 0.32 TCGA-XR-A8TF-01 2 5836047 5836047 C T SOX11 3'UTR 0.62 TCGA-XR-A8TF-01 2 73519494 73519494 G A EGR4 Silent p.P287P 0.58 TCGA-XR-A8TF-01 2 85981926 85981926 A G ATOH8 Missense_Mutation p.D205G 0.57 deleterious(0) possibly_damaging(0.531) TCGA-XR-A8TF-01 3 107096260 107096260 A C CCDC54 5'UTR 0.36 TCGA-XR-A8TF-01 3 119155803 119155803 C A TMEM39A Missense_Mutation p.R316L 0.21 tolerated(0.24) probably_damaging(0.924) TCGA-XR-A8TF-01 3 121126301 121126301 A T STXBP5L Missense_Mutation p.Q957H 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-XR-A8TF-01 3 128720898 128720898 C T EFCC1 Missense_Mutation p.R143C 0.37 deleterious(0) probably_damaging(0.999) TCGA-XR-A8TF-01 3 1414520 1414520 A T CNTN6 Splice_Site p.X557_splice 0.22 TCGA-XR-A8TF-01 3 142388377 142388377 T G PLS1 Missense_Mutation p.S72R 0.05 deleterious(0.03) benign(0.055) TCGA-XR-A8TF-01 3 152880629 152880629 G T RAP2B Silent p.S49S 0.30 TCGA-XR-A8TF-01 3 180652981 180652981 G T FXR1 Missense_Mutation p.D54Y 0.50 deleterious(0) probably_damaging(0.959) TCGA-XR-A8TF-01 3 32433454 32433454 G A CMTM7 Missense_Mutation p.G19E 0.42 tolerated_low_confidence(0.07) possibly_damaging(0.467) TCGA-XR-A8TF-01 3 41266101 41266101 C T CTNNB1 Missense_Mutation p.S33F 0.34 deleterious(0) probably_damaging(0.949) TCGA-XR-A8TF-01 3 46415374 46415374 C T CCR5 Silent p.F327F 0.65 TCGA-XR-A8TF-01 3 49372977 49372977 C A USP4 Missense_Mutation p.D52Y 0.31 deleterious(0) probably_damaging(0.976) TCGA-XR-A8TF-01 3 52554832 52554832 G T STAB1 Missense_Mutation p.A1907S 0.40 tolerated(0.88) benign(0.002) TCGA-XR-A8TF-01 3 57282291 57282291 G T APPL1 Missense_Mutation p.D259Y 0.62 deleterious(0) possibly_damaging(0.836) TCGA-XR-A8TF-01 4 151773243 151773243 G C LRBA Missense_Mutation p.Q1207E 0.33 tolerated_low_confidence(0.91) benign(0) TCGA-XR-A8TF-01 4 156289671 156289671 T G MAP9 Intron 0.93 TCGA-XR-A8TF-01 5 131995416 131995416 T G IL13 Missense_Mutation p.Y77D 0.04 deleterious(0.02) probably_damaging(0.98) TCGA-XR-A8TF-01 5 134670600 134670600 G C H2AFY 3'UTR 0.24 TCGA-XR-A8TF-01 5 137780496 137780496 G A REEP2 Missense_Mutation p.M119I 0.18 deleterious(0.01) benign(0.061) TCGA-XR-A8TF-01 5 140027159 140027159 C T NDUFA2 Missense_Mutation p.A4T 0.54 deleterious(0.02) benign(0.251) TCGA-XR-A8TF-01 5 140176350 140176350 T A PCDHA2 Missense_Mutation p.S601T 0.40 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-XR-A8TF-01 5 140810476 140810476 G A PCDHGA12 Silent p.R50R 0.47 TCGA-XR-A8TF-01 5 141033973 141033973 C A ARAP3 Missense_Mutation p.E1393D 0.56 tolerated(0.12) benign(0.005) TCGA-XR-A8TF-01 5 151271886 151271886 C A GLRA1 Missense_Mutation p.R57M 0.48 deleterious(0) probably_damaging(0.999) TCGA-XR-A8TF-01 5 153857306 153857306 A T HAND1 Missense_Mutation p.L88H 0.58 tolerated(0.41) possibly_damaging(0.839) TCGA-XR-A8TF-01 5 179146764 179146764 C G CANX Missense_Mutation p.A336G 0.41 deleterious(0.01) possibly_damaging(0.537) TCGA-XR-A8TF-01 5 35700832 35700832 G A SPEF2 Missense_Mutation p.M792I 0.19 tolerated(0.07) benign(0.001) TCGA-XR-A8TF-01 5 60827372 60827372 A T ZSWIM6 Missense_Mutation p.T689S 0.45 tolerated(0.74) benign(0.009) TCGA-XR-A8TF-01 6 135239910 135239910 T C ALDH8A1 Silent p.A369A 0.83 TCGA-XR-A8TF-01 6 151936741 151936741 T C CCDC170 Missense_Mutation p.M625T 0.87 tolerated(0.06) benign(0.013) TCGA-XR-A8TF-01 6 159642682 159642682 G T FNDC1 Silent p.R240R 0.87 TCGA-XR-A8TF-01 6 163984896 163984896 A T QKI Intron 0.57 TCGA-XR-A8TF-01 6 166721359 166721359 G A PRR18 Missense_Mutation p.A91V 0.53 tolerated(0.5) possibly_damaging(0.682) TCGA-XR-A8TF-01 6 169621547 169621547 T C THBS2 Missense_Mutation p.R1117G 0.07 deleterious(0) probably_damaging(0.994) TCGA-XR-A8TF-01 6 170043854 170043854 C A WDR27 Missense_Mutation p.L562F 0.42 deleterious(0.03) possibly_damaging(0.551) TCGA-XR-A8TF-01 6 24847799 24847799 G A FAM65B Missense_Mutation p.P400S 0.22 tolerated(0.7) benign(0.029) TCGA-XR-A8TF-01 6 36653724 36653724 C G CDKN1A 3'UTR 0.73 TCGA-XR-A8TF-01 6 56505183 56505183 G A DST Silent p.L213L 0.49 TCGA-XR-A8TF-01 6 7541872 7541872 G T DSP 5'UTR 0.75 TCGA-XR-A8TF-01 6 97247593 97247593 T A GPR63 Silent p.A5A 0.84 TCGA-XR-A8TF-01 7 106301219 106301220 AC - CCDC71L Frame_Shift_Del p.Y42Lfs*9 0.26 TCGA-XR-A8TF-01 7 114284933 114284933 G T FOXP2 Intron 0.13 TCGA-XR-A8TF-01 7 124404436 124404436 T A GPR37 Nonsense_Mutation p.K199* 0.42 TCGA-XR-A8TF-01 7 150720535 150720535 A T ATG9B Missense_Mutation p.L219Q 0.42 deleterious(0.01) probably_damaging(0.992) TCGA-XR-A8TF-01 7 150721491 150721491 C A ATG9B Missense_Mutation p.W7L 0.45 tolerated_low_confidence(0.08) unknown(0) TCGA-XR-A8TF-01 7 151127230 151127230 G C CRYGN Missense_Mutation p.F151L 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.787) TCGA-XR-A8TF-01 7 40174664 40174664 C A SUGCT Nonsense_Mutation p.C22* 0.22 TCGA-XR-A8TF-01 7 44269027 44269027 G T CAMK2B Silent p.P433P 0.03 TCGA-XR-A8TF-01 7 55273161 55273161 A T EGFR Missense_Mutation p.S1162C 0.04 deleterious(0.04) benign(0.287) TCGA-XR-A8TF-01 7 56604510 56604511 AG - RP11-760D2.5 RNA 0.48 TCGA-XR-A8TF-01 7 56604514 56604514 C T RP11-760D2.5 RNA 0.50 TCGA-XR-A8TF-01 7 635936 635936 G A PRKAR1B Silent p.Y185Y 0.39 TCGA-XR-A8TF-01 7 6655579 6655579 T C ZNF853 5'UTR 0.28 TCGA-XR-A8TF-01 7 91503579 91503579 C A MTERF Nonsense_Mutation p.E177* 0.28 TCGA-XR-A8TF-01 7 92099220 92099220 C T ERVW-1 Missense_Mutation p.R159H 0.17 tolerated(0.1) possibly_damaging(0.681) TCGA-XR-A8TF-01 7 99797925 99797925 C T STAG3 Missense_Mutation p.P582S 0.22 tolerated(0.76) benign(0.31) TCGA-XR-A8TF-01 8 103840624 103840624 T C AZIN1 3'UTR 0.71 TCGA-XR-A8TF-01 8 12884149 12884149 C A KIAA1456 3'UTR 0.59 TCGA-XR-A8TF-01 8 12884178 12884178 A T KIAA1456 3'UTR 0.56 TCGA-XR-A8TF-01 8 141678423 141678423 T G PTK2 Missense_Mutation p.E950A 0.29 tolerated(0.48) probably_damaging(0.998) TCGA-XR-A8TF-01 8 144512551 144512551 G T MAFA Missense_Mutation p.A9D 0.27 tolerated(0.1) unknown(0) TCGA-XR-A8TF-01 8 144917879 144917879 C T NRBP2 Missense_Mutation p.A487T 0.27 tolerated(0.52) benign(0.019) TCGA-XR-A8TF-01 8 20110855 20110855 A T LZTS1 Missense_Mutation p.L196Q 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-XR-A8TF-01 8 27957343 27957343 A T ELP3 Splice_Site p.X40_splice 0.63 TCGA-XR-A8TF-01 8 3046418 3046418 C A CSMD1 Silent p.S1838S 0.63 TCGA-XR-A8TF-01 8 30853912 30853912 A T PURG 3'UTR 0.38 TCGA-XR-A8TF-01 8 61765900 61765900 G T CHD7 Nonsense_Mutation p.E2206* 0.28 TCGA-XR-A8TF-01 8 68430279 68430279 C T CPA6 Missense_Mutation p.D66N 0.19 tolerated(0.06) probably_damaging(0.968) TCGA-XR-A8TF-01 8 70970978 70970978 C A PRDM14 Missense_Mutation p.G428V 0.49 deleterious(0) probably_damaging(0.999) TCGA-XR-A8TF-01 9 100105753 100105753 C T CCDC180 Silent p.T846T 0.17 TCGA-XR-A8TF-01 9 101539738 101539738 T A ANKS6 Splice_Site p.X523_splice 0.38 TCGA-XR-A8TF-01 9 109687122 109687122 G A ZNF462 Missense_Mutation p.R310Q 0.22 benign(0.238) TCGA-XR-A8TF-01 9 130648812 130648812 T A ST6GALNAC6 3'UTR 0.25 TCGA-XR-A8TF-01 9 135804262 135804262 T A TSC1 5'UTR 0.47 TCGA-XR-A8TF-01 9 137658880 137658880 A T COL5A1 Missense_Mutation p.Q723L 0.29 unknown(0) TCGA-XR-A8TF-01 9 140151494 140151494 G T NELFB Missense_Mutation p.R195S 0.56 deleterious(0) probably_damaging(1) TCGA-XR-A8TF-01 9 35399446 35399446 G A UNC13B Splice_Site p.X1336_splice 0.65 TCGA-XR-A8TF-01 9 84268953 84268953 T A TLE1 Splice_Site p.X79_splice 0.55 TCGA-XR-A8TF-01 X 114414316 114414316 T A LRCH2 Splice_Site p.X208_splice 0.93 TCGA-XR-A8TF-01 X 12903873 12903873 A T TLR7 Silent p.P82P 0.93 TCGA-XR-A8TF-01 X 1571669 1571669 G A ASMTL Missense_Mutation p.P22L 0.25 deleterious(0) possibly_damaging(0.868) TCGA-XR-A8TF-01 X 23019572 23019572 C T DDX53 Silent p.P466P 0.05 TCGA-XR-A8TF-01 X 2408474 2408474 T A ZBED1 Missense_Mutation p.K96M 0.30 deleterious(0.01) possibly_damaging(0.786) TCGA-XR-A8TF-01 X 37431397 37431397 T A LANCL3 Missense_Mutation p.Y92N 0.91 deleterious(0) probably_damaging(0.993) TCGA-XR-A8TF-01 X 53112112 53112112 G A TSPYL2 Silent p.G144G 0.05 TCGA-XR-A8TG-01 10 117154258 117154258 C T ATRNL1 Nonsense_Mutation p.Q1089* 0.35 TCGA-XR-A8TG-01 10 128936035 128936035 G T FAM196A 3'UTR 0.50 TCGA-XR-A8TG-01 10 48416550 48416550 C T GDF2 Silent p.L48L 0.33 TCGA-XR-A8TG-01 10 75634315 75634315 T C CAMK2G 5'UTR 0.45 TCGA-XR-A8TG-01 11 103039593 103039593 G T DYNC2H1 Missense_Mutation p.W1624C 0.10 probably_damaging(1) TCGA-XR-A8TG-01 11 124294728 124294728 G C OR8B4 Missense_Mutation p.L14V 0.46 deleterious_low_confidence(0) benign(0.055) TCGA-XR-A8TG-01 11 17542918 17542918 C T USH1C Missense_Mutation p.E354K 0.22 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-XR-A8TG-01 11 20473685 20473685 C T PRMT3 Missense_Mutation p.L335F 0.39 probably_damaging(1) TCGA-XR-A8TG-01 11 55418847 55418847 C A OR4S2 Silent p.I156I 0.45 TCGA-XR-A8TG-01 11 62292058 62292058 T C AHNAK Silent p.K3277K 0.46 TCGA-XR-A8TG-01 11 77937909 77937909 C T GAB2 Missense_Mutation p.R270H 0.07 deleterious(0.01) benign(0.1) TCGA-XR-A8TG-01 12 104379458 104379458 G T TDG Nonsense_Mutation p.E348* 0.12 TCGA-XR-A8TG-01 12 113405240 113405240 T C OAS3 Missense_Mutation p.S903P 0.43 tolerated(0.19) benign(0.004) TCGA-XR-A8TG-01 12 126135432 126135432 C T TMEM132B Missense_Mutation p.P611L 0.46 deleterious(0) possibly_damaging(0.744) TCGA-XR-A8TG-01 12 21713390 21713390 T C GYS2 Missense_Mutation p.I367V 0.33 tolerated(0.09) probably_damaging(0.994) TCGA-XR-A8TG-01 12 52886815 52886815 C T KRT6A Missense_Mutation p.G53E 0.42 deleterious(0.02) unknown(0) TCGA-XR-A8TG-01 14 100387202 100387202 C A EML1 Silent p.R652R 0.40 TCGA-XR-A8TG-01 14 104482355 104482355 C G TDRD9 Missense_Mutation p.T754S 0.09 tolerated(0.1) benign(0.04) TCGA-XR-A8TG-01 14 105413863 105413863 G A AHNAK2 Missense_Mutation p.T2642I 0.11 benign(0.39) TCGA-XR-A8TG-01 14 23512989 23512990 - T PSMB11 3'UTR 0.23 TCGA-XR-A8TG-01 14 53619420 53619420 C T DDHD1 Missense_Mutation p.G133S 0.06 tolerated_low_confidence(0.4) benign(0.009) TCGA-XR-A8TG-01 14 74727333 74727333 C T VSX2 Missense_Mutation p.S266L 0.08 tolerated(0.11) benign(0.001) TCGA-XR-A8TG-01 15 41522807 41522807 G A EXD1 5'UTR 0.43 TCGA-XR-A8TG-01 15 42858922 42858922 G T HAUS2 Missense_Mutation p.A206S 0.30 tolerated_low_confidence(0.26) benign(0.059) TCGA-XR-A8TG-01 16 1878115 1878115 T C FAHD1 Intron 0.42 TCGA-XR-A8TG-01 16 21995781 21995781 T C PDZD9 Missense_Mutation p.D141G 0.18 tolerated(0.09) benign(0.176) TCGA-XR-A8TG-01 16 4787921 4787921 G C C16orf71 Missense_Mutation p.A84P 0.40 tolerated(0.33) possibly_damaging(0.833) TCGA-XR-A8TG-01 16 4933888 4933888 C A PPL Missense_Mutation p.A1590S 0.27 tolerated(0.42) benign(0.005) TCGA-XR-A8TG-01 16 55866943 55866943 C T CES1 Missense_Mutation p.A9T 0.41 tolerated(0.5) benign(0.007) TCGA-XR-A8TG-01 16 67976468 67976468 G CCC LCAT Frame_Shift_Ins p.K183Gfs*82 0.32 TCGA-XR-A8TG-01 17 39594488 39594488 G A KRT38 Silent p.I366I 0.36 TCGA-XR-A8TG-01 17 4996515 4996515 C A ZFP3 3'UTR 0.65 TCGA-XR-A8TG-01 17 55693402 55693402 G A MSI2 Silent p.L203L 0.06 TCGA-XR-A8TG-01 17 57289158 57289158 A G SMG8 Silent p.S582S 0.49 TCGA-XR-A8TG-01 17 72613261 72613261 G A CD300E Silent p.S128S 0.42 TCGA-XR-A8TG-01 17 73738810 73738810 G T ITGB4 Missense_Mutation p.R977L 0.33 deleterious(0) probably_damaging(0.998) TCGA-XR-A8TG-01 17 7574033 7574033 T A TP53 Missense_Mutation p.I332F 0.25 deleterious(0) possibly_damaging(0.865) TCGA-XR-A8TG-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.20 deleterious(0) probably_damaging(1) TCGA-XR-A8TG-01 17 7810273 7810273 A G CHD3 Silent p.R1589R 0.05 TCGA-XR-A8TG-01 17 79008986 79008986 C T BAIAP2 5'UTR 0.44 TCGA-XR-A8TG-01 18 47329197 47329197 T C ACAA2 Missense_Mutation p.T15A 0.30 deleterious(0) probably_damaging(0.996) TCGA-XR-A8TG-01 18 61067937 61067937 C A VPS4B Splice_Site p.X162_splice 0.30 TCGA-XR-A8TG-01 19 12429313 12429313 C A ZNF563 3'UTR 0.49 TCGA-XR-A8TG-01 19 19654688 19654688 G T CILP2 Missense_Mutation p.R445I 0.08 tolerated(0.17) benign(0.005) TCGA-XR-A8TG-01 19 21992333 21992333 G T ZNF43 Missense_Mutation p.T169N 0.40 tolerated(0.06) probably_damaging(0.99) TCGA-XR-A8TG-01 19 36606393 36606393 G A TBCB 5'UTR 0.18 TCGA-XR-A8TG-01 19 4288320 4288320 T G SHD Missense_Mutation p.L266R 0.29 tolerated(0.08) possibly_damaging(0.703) TCGA-XR-A8TG-01 19 46973575 46973575 G A PNMAL1 Missense_Mutation p.R240C 0.25 tolerated(0.07) possibly_damaging(0.835) TCGA-XR-A8TG-01 19 49983824 49983824 A T FLT3LG Missense_Mutation p.S226C 0.42 tolerated_low_confidence(0.13) possibly_damaging(0.7) TCGA-XR-A8TG-01 19 50464059 50464059 A G SIGLEC11 Silent p.Y70Y 0.11 TCGA-XR-A8TG-01 19 51293729 51293729 C G ACPT Missense_Mutation p.L20V 0.06 tolerated(0.27) benign(0.001) TCGA-XR-A8TG-01 19 56669904 56669904 G A ZNF444 Silent p.V113V 0.04 TCGA-XR-A8TG-01 1 110280323 110280323 T C GSTM3 Silent p.Q141Q 0.41 TCGA-XR-A8TG-01 1 146765405 146765405 A C CHD1L Missense_Mutation p.K835N 0.05 tolerated(0.46) benign(0.001) TCGA-XR-A8TG-01 1 152328015 152328015 C G FLG2 Silent p.G749G 0.51 TCGA-XR-A8TG-01 1 153931013 153931024 GCCGCGGCCTCC - CRTC2 5'UTR 0.34 TCGA-XR-A8TG-01 1 155984782 155984782 A C SSR2 Silent p.T111T 0.20 TCGA-XR-A8TG-01 1 158724833 158724833 C T OR6K6 Silent p.V76V 0.31 TCGA-XR-A8TG-01 1 180000501 180000501 G C CEP350 Missense_Mutation p.E1199D 0.55 benign(0.224) TCGA-XR-A8TG-01 1 186322973 186322973 C A TPR Missense_Mutation p.M727I 0.17 benign(0.019) TCGA-XR-A8TG-01 1 233514789 233514789 G T MLK4 Missense_Mutation p.Q679H 0.07 tolerated(0.22) benign(0.062) TCGA-XR-A8TG-01 1 36859597 36859597 T A LSM10 Missense_Mutation p.N45I 0.37 deleterious(0) probably_damaging(0.938) TCGA-XR-A8TG-01 1 37945929 37945929 T A ZC3H12A Missense_Mutation p.L161Q 0.37 tolerated(0.81) benign(0.268) TCGA-XR-A8TG-01 1 46876499 46876499 C T FAAH Missense_Mutation p.S430L 0.18 tolerated(0.09) benign(0.002) TCGA-XR-A8TG-01 1 70716344 70716345 - A SRSF11 Frame_Shift_Ins p.E440Rfs*12 0.27 TCGA-XR-A8TG-01 1 78444665 78444665 A G FUBP1 Silent p.P8P 0.08 TCGA-XR-A8TG-01 20 35414900 35414900 G T SOGA1 Silent p.P1658P 0.41 TCGA-XR-A8TG-01 20 42086582 42086582 C T SRSF6 5'UTR 0.41 TCGA-XR-A8TG-01 21 40549463 40549463 T C PSMG1 Silent p.A230A 0.45 TCGA-XR-A8TG-01 21 43792838 43792838 A G TMPRSS3 3'UTR 0.39 TCGA-XR-A8TG-01 22 26298630 26298630 G A MYO18B Missense_Mutation p.G1625D 0.12 tolerated(0.39) benign(0.087) TCGA-XR-A8TG-01 2 103057777 103057777 G A IL18RAP Missense_Mutation p.D246N 0.48 tolerated(1) benign(0.003) TCGA-XR-A8TG-01 2 165350963 165350964 - T GRB14 Frame_Shift_Ins p.I485Nfs*12 0.15 TCGA-XR-A8TG-01 2 176964607 176964607 C T HOXD12 Silent p.F26F 0.35 TCGA-XR-A8TG-01 2 186673007 186673007 T G FSIP2 Missense_Mutation p.I6414S 0.18 possibly_damaging(0.89) TCGA-XR-A8TG-01 2 186673014 186673014 T A FSIP2 Missense_Mutation p.D6416E 0.17 probably_damaging(0.998) TCGA-XR-A8TG-01 2 220435996 220435996 A G OBSL1 5'UTR 0.43 TCGA-XR-A8TG-01 2 31472315 31472315 G A EHD3 Silent p.E161E 0.53 TCGA-XR-A8TG-01 2 32689764 32689764 C G BIRC6 Missense_Mutation p.T1710S 0.40 probably_damaging(0.97) TCGA-XR-A8TG-01 2 5838566 5838566 G A SOX11 3'UTR 0.03 TCGA-XR-A8TG-01 2 70315913 70315913 G T PCBP1 Missense_Mutation p.R346S 0.52 tolerated(0.33) benign(0.191) TCGA-XR-A8TG-01 2 74642705 74642705 C T C2orf81 Nonsense_Mutation p.W173* 0.40 TCGA-XR-A8TG-01 3 152885684 152885684 A G RAP2B 3'UTR 0.42 TCGA-XR-A8TG-01 3 179689381 179689381 C T PEX5L Splice_Site p.X31_splice 0.38 TCGA-XR-A8TG-01 3 196460822 196460822 T - PIGX 3'Flank 0.15 TCGA-XR-A8TG-01 3 48731726 48731726 C T IP6K2 Intron 0.60 TCGA-XR-A8TG-01 4 111412219 111412219 C T ENPEP Nonsense_Mutation p.R273* 0.05 TCGA-XR-A8TG-01 4 114274408 114274408 C G ANK2 Missense_Mutation p.P1545R 0.78 probably_damaging(0.991) TCGA-XR-A8TG-01 4 129019441 129019441 C T LARP1B Nonsense_Mutation p.Q257* 0.19 TCGA-XR-A8TG-01 4 146823924 146823924 C A ZNF827 Missense_Mutation p.A163S 0.52 deleterious(0) probably_damaging(0.997) TCGA-XR-A8TG-01 4 156136851 156136851 C T NPY2R 3'UTR 0.57 TCGA-XR-A8TG-01 4 159091367 159091367 T C FAM198B Intron 0.27 TCGA-XR-A8TG-01 4 165879319 165879319 G T FAM218A 3'UTR 0.59 TCGA-XR-A8TG-01 4 178355598 178355598 G - AGA Frame_Shift_Del p.D248Efs*16 0.22 TCGA-XR-A8TG-01 4 183721246 183721246 C T TENM3 Silent p.D2614D 0.37 TCGA-XR-A8TG-01 4 2909499 2909499 C A ADD1 Silent p.S512S 0.11 TCGA-XR-A8TG-01 4 48385695 48385695 C A SLAIN2 Silent p.S418S 0.04 TCGA-XR-A8TG-01 4 69179869 69179869 C A YTHDC1 Missense_Mutation p.R711L 0.22 deleterious_low_confidence(0.01) unknown(0) TCGA-XR-A8TG-01 5 16694606 16694606 C - MYO10 Frame_Shift_Del p.G1225Afs*22 0.36 TCGA-XR-A8TG-01 5 167525124 167525124 G C TENM2 Missense_Mutation p.C602S 0.24 deleterious(0) probably_damaging(0.998) TCGA-XR-A8TG-01 5 177059360 177059360 T A RP11-1277A3.2 Intron 0.46 TCGA-XR-A8TG-01 5 74325466 74325466 T G GCNT4 Missense_Mutation p.I133L 0.06 tolerated(0.36) benign(0.019) TCGA-XR-A8TG-01 5 98192416 98192416 T A CHD1 Nonsense_Mutation p.R1601* 0.39 TCGA-XR-A8TG-01 6 105564646 105564646 A C BVES Missense_Mutation p.F249C 0.38 deleterious(0) probably_damaging(0.999) TCGA-XR-A8TG-01 6 116381386 116381386 T C FRK Missense_Mutation p.E30G 0.36 tolerated(0.3) benign(0.001) TCGA-XR-A8TG-01 6 127771319 127771319 T C KIAA0408 Missense_Mutation p.N105S 0.39 tolerated(0.82) benign(0.122) TCGA-XR-A8TG-01 6 139694788 139694788 G T CITED2 Missense_Mutation p.F98L 0.36 deleterious(0.03) probably_damaging(0.973) TCGA-XR-A8TG-01 6 146755516 146755516 G T GRM1 Missense_Mutation p.G1057C 0.45 deleterious_low_confidence(0.04) possibly_damaging(0.469) TCGA-XR-A8TG-01 6 32047000 32047000 G A RNA5SP206 5'Flank 0.13 TCGA-XR-A8TG-01 6 34494117 34494117 C A PACSIN1 Missense_Mutation p.P12Q 0.55 tolerated(0.3) benign(0) TCGA-XR-A8TG-01 6 38743590 38743590 G A DNAH8 Missense_Mutation p.G392R 0.37 probably_damaging(1) TCGA-XR-A8TG-01 6 76072567 76072567 A G FILIP1 Missense_Mutation p.Y115H 0.53 deleterious(0) probably_damaging(0.997) TCGA-XR-A8TG-01 7 1484708 1484708 T A MICALL2 Missense_Mutation p.E333V 0.38 tolerated(0.29) benign(0.096) TCGA-XR-A8TG-01 7 30402052 30402052 C T ZNRF2 3'UTR 0.11 TCGA-XR-A8TG-01 7 4150329 4150329 C T SDK1 Missense_Mutation p.T1120I 0.29 tolerated(0.34) benign(0.005) TCGA-XR-A8TG-01 7 45954471 45954471 T C IGFBP3 Missense_Mutation p.Y281C 0.34 deleterious(0) probably_damaging(0.944) TCGA-XR-A8TG-01 8 110539064 110539064 C T PKHD1L1 Missense_Mutation p.S4179F 0.04 deleterious(0) benign(0.388) TCGA-XR-A8TG-01 8 3224660 3224660 C A CSMD1 Silent p.V1003V 0.78 TCGA-XR-A8TG-01 8 52733033 52733033 T G PCMTD1 Missense_Mutation p.K318Q 0.09 tolerated(0.38) benign(0.067) TCGA-XR-A8TG-01 8 67089349 67089363 GCAGCAGCAGCTGCT - CRH In_Frame_Del p.Q117_L121del 0.29 TCGA-XR-A8TG-01 8 69104690 69104690 T C PREX2 Missense_Mutation p.S1512P 0.17 tolerated(0.96) benign(0.261) TCGA-XR-A8TG-01 8 75227529 75227529 G A JPH1 Missense_Mutation p.R236C 0.12 deleterious(0) probably_damaging(0.985) TCGA-XR-A8TG-01 9 111617677 111617677 C G ACTL7B Silent p.V178V 0.09 TCGA-XR-A8TG-01 9 116150499 116150499 C T ALAD 3'UTR 0.50 TCGA-XR-A8TG-01 9 139910208 139910208 T C ABCA2 Missense_Mutation p.I1145V 0.40 tolerated(1) benign(0.012) TCGA-XR-A8TG-01 9 21971209 21971209 T A CDKN2A Splice_Site p.X51_splice 0.37 TCGA-XR-A8TG-01 9 88162138 88162138 T C AGTPBP1 Silent p.A1149A 0.42 TCGA-XR-A8TG-01 X 111699324 111699324 T C ZCCHC16 3'UTR 0.11 TCGA-XR-A8TG-01 X 135318419 135318419 G A MAP7D3 Silent p.A240A 0.09 TCGA-XR-A8TG-01 X 152815622 152815622 A C ATP2B3 Missense_Mutation p.E567D 0.88 deleterious(0.01) probably_damaging(0.983) TCGA-XR-A8TG-01 X 32429887 32429887 T C DMD Silent p.Q1405Q 0.29 TCGA-XR-A8TG-01 X 67430107 67430107 G T OPHN1 Silent p.S240S 0.07 TCGA-YA-A8S7-01 10 126150467 126150467 C T LHPP Silent p.R12R 0.57 TCGA-YA-A8S7-01 10 72195099 72195099 G A AC022532.1 Missense_Mutation p.A16T 0.45 possibly_damaging(0.691) TCGA-YA-A8S7-01 11 100864011 100864011 A G TMEM133 3'UTR 0.13 TCGA-YA-A8S7-01 11 123625085 123625085 A G OR6X1 Missense_Mutation p.W48R 0.30 tolerated(0.19) benign(0.004) TCGA-YA-A8S7-01 11 128934785 128934785 G T ARHGAP32 Missense_Mutation p.A224D 0.28 deleterious(0.04) possibly_damaging(0.491) TCGA-YA-A8S7-01 11 56344592 56344592 A G OR5M10 Silent p.V202V 0.14 TCGA-YA-A8S7-01 11 62298786 62298786 C A AHNAK Missense_Mutation p.D1035Y 0.34 probably_damaging(0.996) TCGA-YA-A8S7-01 11 67166283 67166283 C T PPP1CA Silent p.V275V 0.40 TCGA-YA-A8S7-01 11 67265462 67265462 G C PITPNM1 Missense_Mutation p.L570V 0.27 deleterious(0) possibly_damaging(0.878) TCGA-YA-A8S7-01 11 92564913 92564913 A T FAT3 Missense_Mutation p.I3203F 0.19 possibly_damaging(0.551) TCGA-YA-A8S7-01 12 119909929 119909929 G A CCDC60 Missense_Mutation p.E101K 0.13 tolerated(1) benign(0) TCGA-YA-A8S7-01 12 123201235 123201235 T A HCAR3 Missense_Mutation p.N17I 0.09 deleterious(0) possibly_damaging(0.644) TCGA-YA-A8S7-01 12 2062188 2062188 T C DCP1B Silent p.P306P 0.26 TCGA-YA-A8S7-01 12 53911264 53911264 T G ATF7 Intron 0.36 TCGA-YA-A8S7-01 12 80752454 80752454 G A OTOGL Missense_Mutation p.C2033Y 0.25 deleterious(0) probably_damaging(0.993) TCGA-YA-A8S7-01 12 95500747 95500747 A C FGD6 Missense_Mutation p.S1134A 0.14 tolerated(0.18) benign(0.444) TCGA-YA-A8S7-01 13 114324085 114324085 C A GRK1 Silent p.A261A 0.23 TCGA-YA-A8S7-01 13 25021314 25021314 T C PARP4 Missense_Mutation p.Q1042R 0.30 deleterious(0) probably_damaging(0.998) TCGA-YA-A8S7-01 13 32759191 32759191 C T FRY Silent p.L1075L 0.31 TCGA-YA-A8S7-01 14 106349758 106349758 G C IGHD2-21 3'Flank 0.19 TCGA-YA-A8S7-01 14 24649686 24649686 T G IPO4 Missense_Mutation p.K1070Q 0.21 tolerated(0.61) benign(0.003) TCGA-YA-A8S7-01 14 36988348 36988348 G T NKX2-1 Missense_Mutation p.A102E 0.25 tolerated(0.26) probably_damaging(0.998) TCGA-YA-A8S7-01 14 73637640 73637640 T C PSEN1 Silent p.L75L 0.34 TCGA-YA-A8S7-01 14 88477913 88477913 C A GPR65 Missense_Mutation p.P241H 0.25 deleterious(0) probably_damaging(1) TCGA-YA-A8S7-01 14 91884096 91884096 G T CCDC88C 5'UTR 0.50 TCGA-YA-A8S7-01 15 24924715 24924715 T C NPAP1 3'UTR 0.41 TCGA-YA-A8S7-01 15 27159962 27159962 T G GABRA5 Silent p.S170S 0.41 TCGA-YA-A8S7-01 15 33023643 33023643 A G GREM1 3'UTR 0.52 TCGA-YA-A8S7-01 15 37329105 37329105 C T MEIS2 Silent p.P270P 0.36 TCGA-YA-A8S7-01 15 44961589 44961589 A G PATL2 Missense_Mutation p.I318T 0.33 deleterious(0.03) possibly_damaging(0.861) TCGA-YA-A8S7-01 16 28507458 28507458 G A APOBR Missense_Mutation p.A366T 0.24 tolerated(0.95) possibly_damaging(0.682) TCGA-YA-A8S7-01 16 4015980 4015980 C A ADCY9 Missense_Mutation p.Q1286H 0.12 deleterious_low_confidence(0.05) benign(0.001) TCGA-YA-A8S7-01 16 53529086 53529086 C T AKTIP Splice_Site p.X105_splice 0.13 TCGA-YA-A8S7-01 16 55866976 55866976 G A CES1 5'UTR 0.10 TCGA-YA-A8S7-01 16 58283892 58283892 A G CCDC113 5'UTR 0.52 TCGA-YA-A8S7-01 16 88677881 88677881 A T ZC3H18 Missense_Mutation p.D471V 0.49 tolerated_low_confidence(0.06) unknown(0) TCGA-YA-A8S7-01 17 39658630 39658630 C T KRT13 Missense_Mutation p.A414T 0.06 tolerated(0.19) benign(0.408) TCGA-YA-A8S7-01 17 60758227 60758227 C T MRC2 Missense_Mutation p.A847V 0.34 tolerated(0.4) benign(0.001) TCGA-YA-A8S7-01 17 7578235 7578235 T G TP53 Missense_Mutation p.Y205S 0.36 deleterious(0) possibly_damaging(0.523) TCGA-YA-A8S7-01 17 76993313 76993313 T C CANT1 Missense_Mutation p.K131R 0.06 tolerated(0.47) benign(0.011) TCGA-YA-A8S7-01 17 7909969 7909969 G - GUCY2D Frame_Shift_Del p.G440Dfs*48 0.26 TCGA-YA-A8S7-01 18 52556716 52556716 A G RAB27B 3'UTR 0.09 TCGA-YA-A8S7-01 19 14274022 14274022 G T LPHN1 Silent p.T202T 0.34 TCGA-YA-A8S7-01 19 2245549 2245549 A G SF3A2 Missense_Mutation p.Y117C 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-YA-A8S7-01 19 23835932 23835932 T C ZNF675 3'UTR 0.23 TCGA-YA-A8S7-01 19 39034514 39034514 A G RYR1 Missense_Mutation p.Q4004R 0.13 benign(0.001) TCGA-YA-A8S7-01 19 40009797 40009797 G T SELV 3'UTR 0.05 TCGA-YA-A8S7-01 19 41096311 41096311 G A SHKBP1 Missense_Mutation p.G584D 0.25 tolerated(0.62) benign(0.001) TCGA-YA-A8S7-01 19 45567465 45567465 G A CLASRP Silent p.P367P 0.06 TCGA-YA-A8S7-01 19 47763963 47763963 G T CCDC9 Missense_Mutation p.R110L 0.16 deleterious(0.01) possibly_damaging(0.736) TCGA-YA-A8S7-01 19 49652850 49652850 T C PPFIA3 Missense_Mutation p.F1134S 0.24 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-YA-A8S7-01 19 55290064 55290064 G A KIR2DL1 Missense_Mutation p.G222E 0.23 tolerated(0.12) benign(0.419) TCGA-YA-A8S7-01 19 55740278 55740278 G A TMEM86B 5'UTR 0.10 TCGA-YA-A8S7-01 1 100152711 100152711 T C PALMD Silent p.N160N 0.23 TCGA-YA-A8S7-01 1 115615540 115615540 T C TSPAN2 Missense_Mutation p.E53G 0.16 tolerated(0.16) probably_damaging(0.986) TCGA-YA-A8S7-01 1 1326997 1326997 G A CCNL2 Intron 0.26 TCGA-YA-A8S7-01 1 151641091 151641091 G - SNX27 Frame_Shift_Del p.V377Lfs*12 0.33 TCGA-YA-A8S7-01 1 152770563 152770563 G T LCE1D Missense_Mutation p.G98V 0.25 unknown(0) TCGA-YA-A8S7-01 1 154456427 154456427 T C SHE 3'UTR 0.16 TCGA-YA-A8S7-01 1 156618414 156618414 C T BCAN Missense_Mutation p.A275V 0.46 deleterious(0.04) benign(0.183) TCGA-YA-A8S7-01 1 158908989 158908989 A G PYHIN1 Silent p.P177P 0.21 TCGA-YA-A8S7-01 1 16055169 16055169 A G PLEKHM2 Missense_Mutation p.T643A 0.23 tolerated(1) benign(0.001) TCGA-YA-A8S7-01 1 223396698 223396698 G A SUSD4 Missense_Mutation p.P446L 0.20 tolerated(0.08) benign(0.069) TCGA-YA-A8S7-01 1 225305624 225305624 G A DNAH14 Silent p.L416L 0.19 TCGA-YA-A8S7-01 1 237729909 237729909 G A RYR2 Missense_Mutation p.R1086Q 0.09 probably_damaging(0.996) TCGA-YA-A8S7-01 1 247768926 247768926 C T OR2G3 Silent p.I13I 0.05 TCGA-YA-A8S7-01 1 28282238 28282238 C T SMPDL3B Missense_Mutation p.T245M 0.24 deleterious(0.04) probably_damaging(0.953) TCGA-YA-A8S7-01 1 44436635 44436635 C A DPH2 Intron 0.11 TCGA-YA-A8S7-01 1 55604390 55604390 T A USP24 Missense_Mutation p.D940V 0.29 deleterious(0) probably_damaging(0.983) TCGA-YA-A8S7-01 1 63282243 63282243 T A ATG4C Intron 0.14 TCGA-YA-A8S7-01 1 74540431 74540431 C A LRRIQ3 Missense_Mutation p.R304I 0.23 tolerated(0.13) benign(0.004) TCGA-YA-A8S7-01 1 87104623 87104623 T C RP4-651E10.4 Intron 0.06 TCGA-YA-A8S7-01 20 50048660 50048675 GGTAATACTTCCTTTT - NFATC2 Frame_Shift_Del p.Q884Lfs*4 0.13 TCGA-YA-A8S7-01 20 57767596 57767596 C G ZNF831 Missense_Mutation p.P508A 0.15 deleterious(0) probably_damaging(0.998) TCGA-YA-A8S7-01 20 57768824 57768824 C G ZNF831 Missense_Mutation p.P917R 0.07 tolerated(0.13) benign(0.001) TCGA-YA-A8S7-01 2 168106358 168106358 A G XIRP2 Missense_Mutation p.E2819G 0.04 benign(0.027) TCGA-YA-A8S7-01 2 196788420 196788420 G A DNAH7 Silent p.L1242L 0.29 TCGA-YA-A8S7-01 2 21236200 21236201 - T APOB Frame_Shift_Ins p.V1350Sfs*45 0.17 TCGA-YA-A8S7-01 2 26611924 26611924 C A EPT1 Missense_Mutation p.P383T 0.28 deleterious(0.04) possibly_damaging(0.517) TCGA-YA-A8S7-01 3 10976791 10976791 A G SLC6A11 Missense_Mutation p.Y551C 0.20 tolerated(0.11) probably_damaging(0.94) TCGA-YA-A8S7-01 3 121303907 121303907 G C ARGFX Missense_Mutation p.V122L 0.19 deleterious(0.04) benign(0.377) TCGA-YA-A8S7-01 3 132172975 132172975 A G DNAJC13 Silent p.Q302Q 0.20 TCGA-YA-A8S7-01 3 170725003 170725003 G A SLC2A2 Silent p.T182T 0.17 TCGA-YA-A8S7-01 3 172473092 172473092 G C ECT2 Missense_Mutation p.M46I 0.24 tolerated(0.14) benign(0.04) TCGA-YA-A8S7-01 3 47165806 47165806 G A SETD2 Missense_Mutation p.P107L 0.20 deleterious_low_confidence(0) benign(0.14) TCGA-YA-A8S7-01 3 49785257 49785257 A - IP6K1 Frame_Shift_Del p.Y73Tfs*19 0.16 TCGA-YA-A8S7-01 4 146806895 146806895 G A ZNF827 Missense_Mutation p.A561V 0.05 deleterious(0.01) possibly_damaging(0.711) TCGA-YA-A8S7-01 4 159627390 159627390 G A ETFDH Nonsense_Mutation p.W445* 0.38 TCGA-YA-A8S7-01 4 55945936 55945936 C T KDR 3'UTR 0.25 TCGA-YA-A8S7-01 5 101815950 101815950 G C SLCO6A1 Missense_Mutation p.L183V 0.26 tolerated(0.22) benign(0.088) TCGA-YA-A8S7-01 5 134670770 134670770 C T H2AFY Missense_Mutation p.V339M 0.22 tolerated(0.07) probably_damaging(0.92) TCGA-YA-A8S7-01 5 145890244 145890244 C T TCERG1 3'UTR 0.25 TCGA-YA-A8S7-01 5 17354070 17354070 T A CTD-2139B15.2 RNA 0.16 TCGA-YA-A8S7-01 5 54527175 54527175 G C CCNO 3'UTR 0.33 TCGA-YA-A8S7-01 6 119510970 119510970 G A MAN1A1 Missense_Mutation p.H469Y 0.43 deleterious(0) possibly_damaging(0.723) TCGA-YA-A8S7-01 6 32154022 32154022 T C PBX2 3'UTR 0.13 TCGA-YA-A8S7-01 6 43273405 43273405 T A CRIP3 3'UTR 0.43 TCGA-YA-A8S7-01 6 74229620 74229620 T C EEF1A1 Missense_Mutation p.K44E 0.17 deleterious_low_confidence(0.01) benign(0.011) TCGA-YA-A8S7-01 6 75904617 75904617 A T COL12A1 Silent p.T40T 0.40 TCGA-YA-A8S7-01 6 83847837 83847837 A G DOPEY1 Missense_Mutation p.N1359S 0.09 tolerated(0.31) benign(0) TCGA-YA-A8S7-01 6 96651692 96651692 G C FUT9 Missense_Mutation p.A221P 0.15 tolerated(0.07) possibly_damaging(0.722) TCGA-YA-A8S7-01 7 117876954 117876954 A C ANKRD7 Missense_Mutation p.N229T 0.13 tolerated(0.28) benign(0.015) TCGA-YA-A8S7-01 7 120782177 120782177 A G CPED1 Silent p.T679T 0.35 TCGA-YA-A8S7-01 7 2290742 2290742 T A NUDT1 3'UTR 0.22 TCGA-YA-A8S7-01 7 57188114 57188114 C G ZNF479 Missense_Mutation p.W336C 0.34 tolerated(0.22) benign(0.002) TCGA-YA-A8S7-01 7 82580196 82580196 C T PCLO Silent p.E3236E 0.35 TCGA-YA-A8S7-01 8 104427710 104427710 T C DCAF13 Silent p.N164N 0.10 TCGA-YA-A8S7-01 8 107773171 107773171 A G ABRA 3'UTR 0.11 TCGA-YA-A8S7-01 8 126033052 126033052 T A SQLE Missense_Mutation p.C491S 0.08 deleterious(0.01) probably_damaging(0.975) TCGA-YA-A8S7-01 8 39695697 39695697 C T ADAM2 Missense_Mutation p.R3H 0.10 tolerated(0.33) benign(0.224) TCGA-YA-A8S7-01 8 49988026 49988026 G A C8orf22 3'UTR 0.38 TCGA-YA-A8S7-01 8 59404951 59404951 C T CYP7A1 Silent p.Q392Q 0.09 TCGA-YA-A8S7-01 8 91029393 91029393 A T DECR1 Missense_Mutation p.E37D 0.04 tolerated_low_confidence(0.55) benign(0) TCGA-YA-A8S7-01 8 94747750 94747750 C T RBM12B Missense_Mutation p.E297K 0.16 tolerated(1) benign(0.002) TCGA-YA-A8S7-01 9 140062032 140062032 G A GRIN1 Intron 0.35 TCGA-YA-A8S7-01 9 711084 711084 C A KANK1 Missense_Mutation p.F106L 0.32 tolerated(0.5) benign(0.005) TCGA-YA-A8S7-01 9 72967325 72967325 G A SMC5 3'UTR 0.32 TCGA-YA-A8S7-01 9 79971726 79971726 A G VPS13A Silent p.E2583E 0.11 TCGA-YA-A8S7-01 X 57936796 57936798 CCG - ZXDA In_Frame_Del p.G20del 0.14 TCGA-YA-A8S7-01 X 69712085 69712085 C G DLG3 Missense_Mutation p.T550S 0.07 tolerated(0.17) benign(0.407) TCGA-ZP-A9CV-01 10 112055050 112055050 T C SMNDC1 Missense_Mutation p.E172G 0.23 deleterious(0) possibly_damaging(0.611) TCGA-ZP-A9CV-01 10 12198996 12198996 G T SEC61A2 Missense_Mutation p.R236L 0.26 deleterious(0) probably_damaging(0.999) TCGA-ZP-A9CV-01 10 135101696 135101696 C T TUBGCP2 Silent p.A581A 0.06 TCGA-ZP-A9CV-01 10 93390285 93390285 T G PPP1R3C Missense_Mutation p.D118A 0.04 deleterious(0.01) possibly_damaging(0.802) TCGA-ZP-A9CV-01 11 103908945 103908945 C A DDI1 3'UTR 0.30 TCGA-ZP-A9CV-01 11 120280158 120280158 T C ARHGEF12 Silent p.Y66Y 0.37 TCGA-ZP-A9CV-01 11 17496572 17496572 A G ABCC8 Missense_Mutation p.W51R 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-ZP-A9CV-01 11 33628362 33628362 C T KIAA1549L Silent p.N1388N 0.29 TCGA-ZP-A9CV-01 11 56237304 56237304 G A OR5M3 Silent p.L224L 0.36 TCGA-ZP-A9CV-01 11 57258721 57258721 T C SLC43A1 Missense_Mutation p.Q390R 0.32 tolerated(0.16) benign(0) TCGA-ZP-A9CV-01 11 60197289 60197289 A G MS4A5 Missense_Mutation p.K48E 0.33 deleterious(0.03) benign(0.086) TCGA-ZP-A9CV-01 11 63680390 63680390 G A RCOR2 Silent p.S307S 0.35 TCGA-ZP-A9CV-01 11 64137353 64137353 G A RPS6KA4 Silent p.L595L 0.35 TCGA-ZP-A9CV-01 11 67220107 67220107 C G GPR152 Missense_Mutation p.G30A 0.28 tolerated(0.06) possibly_damaging(0.556) TCGA-ZP-A9CV-01 11 76372166 76372166 C T LRRC32 Silent p.A157A 0.22 TCGA-ZP-A9CV-01 11 7847513 7847513 T C OR5P3 Missense_Mutation p.T3A 0.36 tolerated(0.84) benign(0.003) TCGA-ZP-A9CV-01 12 124358197 124358197 T C DNAH10 Silent p.T2508T 0.35 TCGA-ZP-A9CV-01 12 124413833 124413833 G T DNAH10 Missense_Mutation p.E3988D 0.32 probably_damaging(0.994) TCGA-ZP-A9CV-01 12 124413834 124413834 C T DNAH10 Missense_Mutation p.P3989S 0.33 probably_damaging(0.994) TCGA-ZP-A9CV-01 12 41961651 41961651 G T PDZRN4 Nonsense_Mutation p.E512* 0.28 TCGA-ZP-A9CV-01 12 46230548 46230548 G A ARID2 Nonsense_Mutation p.W266* 0.29 TCGA-ZP-A9CV-01 12 48723425 48723425 C T H1FNT Silent p.A117A 0.28 TCGA-ZP-A9CV-01 12 53208127 53208127 C T KRT4 5'UTR 0.26 TCGA-ZP-A9CV-01 12 56142532 56142532 T G GDF11 Missense_Mutation p.L203R 0.27 tolerated(0.13) benign(0.216) TCGA-ZP-A9CV-01 12 56812013 56812013 C T TIMELESS Missense_Mutation p.G1120D 0.34 tolerated_low_confidence(0.59) benign(0.006) TCGA-ZP-A9CV-01 12 7639354 7639354 C T CD163 Silent p.E733E 0.25 TCGA-ZP-A9CV-01 13 28601301 28601301 G A FLT3 Missense_Mutation p.H711Y 0.04 tolerated(0.07) possibly_damaging(0.6) TCGA-ZP-A9CV-01 14 105409536 105409536 C A AHNAK2 Missense_Mutation p.K4084N 0.28 probably_damaging(0.948) TCGA-ZP-A9CV-01 14 20612126 20612126 G T OR4N5 Missense_Mutation p.V78F 0.22 deleterious(0.01) benign(0.089) TCGA-ZP-A9CV-01 14 23884310 23884310 C G MYH7 Missense_Mutation p.R1818P 0.34 deleterious(0) probably_damaging(0.996) TCGA-ZP-A9CV-01 14 36943085 36943085 A T SFTA3 Missense_Mutation p.M88K 0.31 deleterious_low_confidence(0.04) benign(0.092) TCGA-ZP-A9CV-01 14 63511879 63511879 A G KCNH5 Missense_Mutation p.V9A 0.16 deleterious(0) benign(0.097) TCGA-ZP-A9CV-01 14 64608713 64608713 G T SYNE2 Missense_Mutation p.W5071C 0.28 probably_damaging(1) TCGA-ZP-A9CV-01 15 29415500 29415500 T G FAM189A1 3'UTR 0.31 TCGA-ZP-A9CV-01 15 50578211 50578211 T G GABPB1 Intron 0.40 TCGA-ZP-A9CV-01 15 50578220 50578220 T C GABPB1 Intron 0.34 TCGA-ZP-A9CV-01 15 70366931 70366931 C T TLE3 Missense_Mutation p.A105T 0.26 tolerated(0.27) probably_damaging(0.999) TCGA-ZP-A9CV-01 15 75693237 75693237 T A SIN3A Missense_Mutation p.Y524F 0.29 tolerated(0.28) benign(0.094) TCGA-ZP-A9CV-01 16 1840465 1840465 T C IGFALS 3'Flank 0.34 TCGA-ZP-A9CV-01 16 28188641 28188641 T C XPO6 Missense_Mutation p.N36S 0.34 deleterious(0.04) benign(0.243) TCGA-ZP-A9CV-01 16 29819111 29819111 G - MAZ Frame_Shift_Del p.K335Nfs*67 0.30 TCGA-ZP-A9CV-01 16 30731600 30731600 A G SRCAP Missense_Mutation p.T979A 0.42 unknown(0) TCGA-ZP-A9CV-01 16 4511950 4511950 T G NMRAL1 Missense_Mutation p.E244A 0.29 deleterious(0.01) possibly_damaging(0.831) TCGA-ZP-A9CV-01 16 67916665 67916665 G A EDC4 Missense_Mutation p.G1176S 0.32 tolerated(0.55) benign(0.114) TCGA-ZP-A9CV-01 16 72820987 72820987 T C ZFHX3 3'UTR 0.30 TCGA-ZP-A9CV-01 17 26944143 26944143 T G KIAA0100 Intron 0.25 TCGA-ZP-A9CV-01 17 27591409 27591409 G A NUFIP2 3'UTR 0.21 TCGA-ZP-A9CV-01 17 29632116 29632116 G A EVI2B Missense_Mutation p.T171I 0.30 tolerated(0.17) benign(0) TCGA-ZP-A9CV-01 17 37882886 37882886 G T ERBB2 Missense_Mutation p.D982Y 0.30 deleterious(0) probably_damaging(0.985) TCGA-ZP-A9CV-01 17 38189360 38189360 T C MED24 Silent p.T257T 0.38 TCGA-ZP-A9CV-01 17 435814 435814 A C VPS53 Intron 0.44 TCGA-ZP-A9CV-01 17 48625802 48625802 A G SPATA20 Missense_Mutation p.N95S 0.10 deleterious(0) probably_damaging(0.985) TCGA-ZP-A9CV-01 17 61911879 61911879 T C SMARCD2 Silent p.G292G 0.29 TCGA-ZP-A9CV-01 17 67212380 67212380 T C ABCA10 Missense_Mutation p.Y217C 0.30 deleterious(0) possibly_damaging(0.762) TCGA-ZP-A9CV-01 17 7216083 7216095 GGTAGAATCGCGG - GPS2 Frame_Shift_Del p.P322Tfs*19 0.25 TCGA-ZP-A9CV-01 17 80897258 80897258 G A TBCD Missense_Mutation p.A1129T 0.19 deleterious(0) probably_damaging(0.94) TCGA-ZP-A9CV-01 18 48500817 48500820 CCAT - ELAC1 Frame_Shift_Del p.P15Lfs*31 0.32 TCGA-ZP-A9CV-01 18 67994203 67994203 A G SOCS6 3'UTR 0.29 TCGA-ZP-A9CV-01 18 77170730 77170730 C T NFATC1 Missense_Mutation p.P139L 0.08 tolerated(0.08) benign(0.071) TCGA-ZP-A9CV-01 19 14580605 14580605 A G PKN1 Missense_Mutation p.H738R 0.08 deleterious(0) probably_damaging(1) TCGA-ZP-A9CV-01 19 22574285 22574285 C A ZNF98 3'UTR 0.35 TCGA-ZP-A9CV-01 19 23329411 23329411 A G ZNF730 3'UTR 0.23 TCGA-ZP-A9CV-01 19 2944971 2944971 C T ZNF77 5'Flank 0.26 TCGA-ZP-A9CV-01 19 30496346 30496346 A G URI1 Missense_Mutation p.Q149R 0.31 deleterious(0.05) benign(0.098) TCGA-ZP-A9CV-01 19 31768721 31768721 T C TSHZ3 Missense_Mutation p.S660G 0.41 tolerated(0.23) benign(0) TCGA-ZP-A9CV-01 19 48821778 48821778 C T CCDC114 Missense_Mutation p.A39T 0.15 deleterious(0.01) benign(0.228) TCGA-ZP-A9CV-01 19 50812373 50812373 G A MYH14 Missense_Mutation p.D1967N 0.33 deleterious(0) probably_damaging(0.948) TCGA-ZP-A9CV-01 19 53432469 53432469 G A ZNF321P Missense_Mutation p.T130I 0.40 tolerated(0.11) probably_damaging(0.929) TCGA-ZP-A9CV-01 19 54755933 54755933 A T LILRB5 Missense_Mutation p.V538E 0.28 deleterious(0.02) benign(0.26) TCGA-ZP-A9CV-01 1 12888359 12888359 G T PRAMEF11 Silent p.P55P 0.27 TCGA-ZP-A9CV-01 1 12888360 12888360 G T PRAMEF11 Missense_Mutation p.P55H 0.28 deleterious(0) benign(0.022) TCGA-ZP-A9CV-01 1 145748530 145748530 C G PDZK1 Missense_Mutation p.L135V 0.43 deleterious(0.01) probably_damaging(0.983) TCGA-ZP-A9CV-01 1 152488244 152488244 G T CRCT1 3'UTR 0.20 TCGA-ZP-A9CV-01 1 155003072 155003072 C T DCST2 Missense_Mutation p.M285I 0.16 tolerated(1) benign(0) TCGA-ZP-A9CV-01 1 158725375 158725375 C T OR6K6 Missense_Mutation p.S257L 0.16 deleterious(0) probably_damaging(0.992) TCGA-ZP-A9CV-01 1 165621242 165621242 T G MGST3 Missense_Mutation p.F73L 0.04 tolerated(0.09) benign(0.147) TCGA-ZP-A9CV-01 1 210414919 210414919 A C SERTAD4 Missense_Mutation p.E103A 0.36 deleterious(0) probably_damaging(0.994) TCGA-ZP-A9CV-01 1 231048481 231048481 A - TTC13 Frame_Shift_Del p.V706Gfs*17 0.32 TCGA-ZP-A9CV-01 1 247201279 247201279 T C ZNF670 Silent p.E214E 0.16 TCGA-ZP-A9CV-01 1 27686481 27686481 G A MAP3K6 Silent p.S729S 0.12 TCGA-ZP-A9CV-01 1 6257812 6257812 T - RPL22 Frame_Shift_Del p.K6Sfs*4 0.25 TCGA-ZP-A9CV-01 1 65316572 65316572 G A JAK1 Missense_Mutation p.A557V 0.14 tolerated(1) benign(0.01) TCGA-ZP-A9CV-01 1 65316573 65316573 C A JAK1 Missense_Mutation p.A557S 0.14 tolerated(0.22) benign(0.01) TCGA-ZP-A9CV-01 1 79387445 79387445 A G ELTD1 Silent p.C370C 0.35 TCGA-ZP-A9CV-01 1 84543803 84543803 C T RP11-486G15.2 5'Flank 0.15 TCGA-ZP-A9CV-01 22 50654151 50654151 G A SELO Missense_Mutation p.D453N 0.07 deleterious(0.01) probably_damaging(0.944) TCGA-ZP-A9CV-01 2 113487248 113487248 C T NT5DC4 Silent p.D405D 0.28 TCGA-ZP-A9CV-01 2 131675046 131675046 G A ARHGEF4 5'UTR 0.31 TCGA-ZP-A9CV-01 2 169626068 169626068 G T CERS6 Missense_Mutation p.D359Y 0.28 tolerated(0.05) possibly_damaging(0.556) TCGA-ZP-A9CV-01 2 171822386 171822386 C G GORASP2 Missense_Mutation p.P369A 0.39 tolerated(0.06) possibly_damaging(0.811) TCGA-ZP-A9CV-01 2 179423342 179423342 T G TTN Missense_Mutation p.K28948N 0.06 TCGA-ZP-A9CV-01 2 242054738 242054738 T C PASK Missense_Mutation p.I1055V 0.26 deleterious(0.03) probably_damaging(0.993) TCGA-ZP-A9CV-01 2 55253876 55253876 A G RTN4 Silent p.G453G 0.33 TCGA-ZP-A9CV-01 2 56611449 56611449 A C CCDC85A Silent p.R541R 0.32 TCGA-ZP-A9CV-01 2 65357050 65357050 G A RAB1A 5'UTR 0.34 TCGA-ZP-A9CV-01 2 70910804 70910804 G A ADD2 Silent p.A348A 0.27 TCGA-ZP-A9CV-01 2 71913757 71913757 A G DYSF 3'UTR 0.23 TCGA-ZP-A9CV-01 2 74757803 74757803 C T HTRA2 Missense_Mutation p.A189V 0.25 deleterious(0.04) possibly_damaging(0.477) TCGA-ZP-A9CV-01 3 124201708 124201708 G A KALRN Silent p.K1413K 0.40 TCGA-ZP-A9CV-01 3 138664350 138664350 C T FOXL2 3'UTR 0.25 TCGA-ZP-A9CV-01 3 138724705 138724705 C T PRR23A Missense_Mutation p.V136I 0.32 tolerated(0.14) benign(0.112) TCGA-ZP-A9CV-01 3 14154255 14154255 C T CHCHD4 3'UTR 0.19 TCGA-ZP-A9CV-01 3 183465489 183465489 T C YEATS2 Silent p.T318T 0.05 TCGA-ZP-A9CV-01 3 37370558 37370558 G T GOLGA4 Missense_Mutation p.A2078S 0.05 probably_damaging(0.999) TCGA-ZP-A9CV-01 3 41266137 41266137 C T CTNNB1 Missense_Mutation p.S45F 0.31 deleterious(0) probably_damaging(0.954) TCGA-ZP-A9CV-01 3 42264841 42264841 A G TRAK1 Missense_Mutation p.K825R 0.07 tolerated(0.57) possibly_damaging(0.856) TCGA-ZP-A9CV-01 4 135121098 135121098 G T PABPC4L Silent p.S417S 0.30 TCGA-ZP-A9CV-01 4 138451883 138451883 G T PCDH18 Missense_Mutation p.Q454K 0.30 tolerated(0.68) benign(0.403) TCGA-ZP-A9CV-01 4 183658118 183658118 G A TENM3 Missense_Mutation p.G1042E 0.06 deleterious(0) probably_damaging(0.972) TCGA-ZP-A9CV-01 4 189022387 189022387 A T TRIML2 Missense_Mutation p.F51L 0.30 tolerated(0.12) possibly_damaging(0.799) TCGA-ZP-A9CV-01 4 83778256 83778267 AAAGCCTGAGTA - SEC31A In_Frame_Del p.I573_L577delinsM 0.24 TCGA-ZP-A9CV-01 4 88535923 88535925 TAG - DSPP In_Frame_Del p.S705del 0.17 TCGA-ZP-A9CV-01 5 122682079 122682079 C T CEP120 3'UTR 0.50 TCGA-ZP-A9CV-01 5 1295161 1295161 T G TERT 5'UTR 0.32 TCGA-ZP-A9CV-01 5 141027040 141027040 G C FCHSD1 Silent p.S251S 0.35 TCGA-ZP-A9CV-01 5 145435595 145435595 G A SH3RF2 Nonsense_Mutation p.W458* 0.42 TCGA-ZP-A9CV-01 5 15928342 15928342 C T FBXL7 Silent p.I157I 0.28 TCGA-ZP-A9CV-01 5 178043943 178043943 A C CLK4 Missense_Mutation p.I161S 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-ZP-A9CV-01 5 178043949 178043949 T G CLK4 Missense_Mutation p.Y159S 0.29 deleterious(0) probably_damaging(1) TCGA-ZP-A9CV-01 5 31267451 31267451 A C CDH6 Splice_Site 0.22 TCGA-ZP-A9CV-01 5 39141216 39141216 A G FYB Silent p.D450D 0.33 TCGA-ZP-A9CV-01 5 42808264 42808264 C T SEPP1 Silent p.L64L 0.30 TCGA-ZP-A9CV-01 6 125584049 125584049 A G TPD52L1 Missense_Mutation p.S186G 0.34 deleterious(0.04) probably_damaging(0.999) TCGA-ZP-A9CV-01 6 129468191 129468191 A T LAMA2 Missense_Mutation p.N303Y 0.37 deleterious(0) probably_damaging(0.981) TCGA-ZP-A9CV-01 6 26388421 26388421 C T BTN2A2 Missense_Mutation p.T208I 0.35 deleterious(0.02) benign(0.248) TCGA-ZP-A9CV-01 6 46977900 46977900 A C GPR110 Missense_Mutation p.F424C 0.41 deleterious(0.01) possibly_damaging(0.855) TCGA-ZP-A9CV-01 6 73043310 73043310 A G RIMS1 Missense_Mutation p.T1380A 0.34 tolerated(0.1) probably_damaging(0.989) TCGA-ZP-A9CV-01 6 73951065 73951065 G T KHDC1 3'UTR 0.41 TCGA-ZP-A9CV-01 6 86277255 86277255 T A SNX14 Missense_Mutation p.Y153F 0.31 tolerated(0.1) possibly_damaging(0.866) TCGA-ZP-A9CV-01 7 100189324 100189324 C A FBXO24 Silent p.G157G 0.40 TCGA-ZP-A9CV-01 7 101921227 101921227 G T CUX1 Missense_Mutation p.R522L 0.23 tolerated(0.17) benign(0.028) TCGA-ZP-A9CV-01 7 122338822 122338822 G A RNF133 Missense_Mutation p.H51Y 0.28 tolerated(0.06) benign(0.091) TCGA-ZP-A9CV-01 7 157155909 157155909 A C DNAJB6 Missense_Mutation p.E40D 0.32 tolerated(0.08) possibly_damaging(0.769) TCGA-ZP-A9CV-01 7 2559888 2559888 C T LFNG Silent p.D131D 0.31 TCGA-ZP-A9CV-01 7 62752405 62752405 G T ZNF733P RNA 0.22 TCGA-ZP-A9CV-01 7 73663436 73663436 T A RFC2 Missense_Mutation p.T80S 0.27 deleterious(0.04) benign(0.236) TCGA-ZP-A9CV-01 8 10466108 10466108 C T RP1L1 Missense_Mutation p.G1834S 0.42 unknown(0) TCGA-ZP-A9CV-01 8 105456619 105456619 T A DPYS Missense_Mutation p.H217L 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-ZP-A9CV-01 8 113236840 113236840 T C CSMD3 3'UTR 0.17 TCGA-ZP-A9CV-01 8 131146576 131146576 G A ASAP1 Missense_Mutation p.H395Y 0.28 deleterious(0) benign(0.179) TCGA-ZP-A9CV-01 8 142221335 142221335 C T SLC45A4 3'UTR 0.27 TCGA-ZP-A9CV-01 8 143746721 143746721 C T JRK RNA 0.20 TCGA-ZP-A9CV-01 8 30890148 30890148 C T PURG Missense_Mutation p.A51T 0.47 tolerated(0.25) benign(0.002) TCGA-ZP-A9CV-01 8 33356779 33356779 A T TTI2 Missense_Mutation p.I480N 0.49 deleterious(0) benign(0.235) TCGA-ZP-A9CV-01 8 55538752 55538752 T C RP1 Silent p.V770V 0.04 TCGA-ZP-A9CV-01 8 92406266 92406266 A G SLC26A7 Missense_Mutation p.K645R 0.27 tolerated(0.69) benign(0.027) TCGA-ZP-A9CV-01 9 100403939 100403963 TACAGTGTATGTATGCAAAAGATTT - NCBP1 Splice_Site p.X73_splice 0.29 TCGA-ZP-A9CV-01 9 103212870 103212870 C A MSANTD3 Nonsense_Mutation p.C150* 0.40 TCGA-ZP-A9CV-01 9 104161263 104161273 GCGTCTGATAT - ZNF189 5'Flank 0.22 TCGA-ZP-A9CV-01 9 114182326 114182326 T C KIAA0368 Silent p.R688R 0.30 TCGA-ZP-A9CV-01 9 117848857 117848857 C T TNC Missense_Mutation p.G385S 0.14 deleterious(0) probably_damaging(1) TCGA-ZP-A9CV-01 9 40702834 40702834 A T SPATA31A3 Missense_Mutation p.D164V 0.20 tolerated(0.41) probably_damaging(0.972) TCGA-ZP-A9CV-01 9 87359941 87359941 A T NTRK2 Missense_Mutation p.I417F 0.26 tolerated(0.71) benign(0.001) TCGA-ZP-A9CV-01 X 100880946 100880946 A G ARMCX3 Missense_Mutation p.N326S 0.82 tolerated(0.58) benign(0.002) TCGA-ZP-A9CV-01 X 134125216 134125216 C A SMIM10 Missense_Mutation p.R31S 0.45 tolerated(0.35) possibly_damaging(0.708) TCGA-ZP-A9CV-01 X 142718337 142718339 GAT CAAA SLITRK4 Frame_Shift_Ins p.I196Ffs*12 0.65 TCGA-ZP-A9CV-01 X 150912121 150912121 G T CNGA2 Silent p.R382R 0.41 TCGA-ZP-A9CV-01 X 150912140 150912140 A G CNGA2 Missense_Mutation p.I389V 0.76 tolerated(0.33) benign(0.038) TCGA-ZP-A9CV-01 X 15864090 15864090 T C AP1S2 Missense_Mutation p.N75S 0.65 deleterious(0.04) benign(0.377) TCGA-ZP-A9CV-01 X 20187600 20187600 T A RPS6KA3 Nonsense_Mutation p.K455* 0.08 TCGA-ZP-A9CV-01 X 2724766 2724766 C T XG Missense_Mutation p.S133F 0.13 tolerated(0.16) benign(0.011) TCGA-ZP-A9CV-01 X 47918452 47918452 A G ZNF630 Missense_Mutation p.V460A 0.59 tolerated(0.73) benign(0.197) TCGA-ZP-A9CV-01 X 69960592 69960592 A G TEX11 Missense_Mutation p.Y283H 0.60 tolerated(0.17) benign(0.067) TCGA-ZP-A9CV-01 X 78616864 78616864 C T ITM2A Missense_Mutation p.R222K 0.19 tolerated(1) benign(0.006) TCGA-ZP-A9CY-01 10 108339004 108339004 A G SORCS1 Missense_Mutation p.I1126T 0.07 deleterious(0.01) possibly_damaging(0.791) TCGA-ZP-A9CY-01 10 26462696 26462696 C A MYO3A Missense_Mutation p.T1168N 0.34 tolerated(0.5) benign(0.002) TCGA-ZP-A9CY-01 10 72061218 72061218 G A LRRC20 Silent p.I149I 0.25 TCGA-ZP-A9CY-01 10 89419662 89419663 - GCC PAPSS2 5'UTR 0.24 TCGA-ZP-A9CY-01 11 101323743 101323743 A G TRPC6 Silent p.I913I 0.36 TCGA-ZP-A9CY-01 11 111951423 111951423 A C C11orf57 Intron 0.14 TCGA-ZP-A9CY-01 11 117066535 117066535 G C SIDT2 Silent p.S780S 0.42 TCGA-ZP-A9CY-01 11 123599920 123599920 C A ZNF202 Missense_Mutation p.V206F 0.44 tolerated(0.22) benign(0.157) TCGA-ZP-A9CY-01 11 55579715 55579715 T G OR5L1 Missense_Mutation p.I258S 0.29 tolerated(0.06) benign(0.052) TCGA-ZP-A9CY-01 11 56310259 56310259 C A OR5M11 Missense_Mutation p.A159S 0.27 tolerated(0.05) benign(0.021) TCGA-ZP-A9CY-01 11 59634034 59634034 C T TCN1 5'UTR 0.12 TCGA-ZP-A9CY-01 11 93836112 93836112 A G HEPHL1 Missense_Mutation p.K870E 0.36 tolerated(1) benign(0.04) TCGA-ZP-A9CY-01 12 102455087 102455087 A G CCDC53 Missense_Mutation p.L30P 0.38 deleterious(0) probably_damaging(0.996) TCGA-ZP-A9CY-01 12 110496826 110496826 A T C12orf76 Missense_Mutation p.I53N 0.30 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-ZP-A9CY-01 12 112915714 112915714 C A PTPN11 Silent p.A329A 0.40 TCGA-ZP-A9CY-01 12 122667682 122667682 G A LRRC43 5'UTR 0.21 TCGA-ZP-A9CY-01 12 26275865 26275865 C T BHLHE41 Missense_Mutation p.A195T 0.32 tolerated(0.39) benign(0.081) TCGA-ZP-A9CY-01 12 3692299 3692299 G A PRMT8 Missense_Mutation p.D302N 0.38 deleterious(0) possibly_damaging(0.872) TCGA-ZP-A9CY-01 13 103268744 103268744 A T TPP2 Splice_Site p.X131_splice 0.42 TCGA-ZP-A9CY-01 13 107822876 107822876 G T FAM155A Missense_Mutation p.T449K 0.30 deleterious(0.02) benign(0.087) TCGA-ZP-A9CY-01 13 111367802 111367802 G T ING1 Silent p.V4V 0.36 TCGA-ZP-A9CY-01 13 28197262 28197262 G T POLR1D Missense_Mutation p.V93F 0.32 tolerated(0.08) benign(0.131) TCGA-ZP-A9CY-01 13 32936724 32936724 T A BRCA2 Missense_Mutation p.Y2624N 0.19 deleterious(0) probably_damaging(1) TCGA-ZP-A9CY-01 13 52439533 52439533 C T CCDC70 Missense_Mutation p.R7W 0.13 tolerated_low_confidence(0.27) benign(0.001) TCGA-ZP-A9CY-01 14 24910181 24910196 GGCTCTCTGTAGTGGA - KHNYN 3'UTR 0.25 TCGA-ZP-A9CY-01 14 60212764 60212764 T C RTN1 Missense_Mutation p.D226G 0.31 tolerated(0.36) benign(0.003) TCGA-ZP-A9CY-01 14 90756941 90756941 T A NRDE2 Missense_Mutation p.D618V 0.35 deleterious(0) probably_damaging(0.999) TCGA-ZP-A9CY-01 15 65746732 65746732 G A DPP8 Nonsense_Mutation p.Q730* 0.31 TCGA-ZP-A9CY-01 15 74235244 74235244 T C LOXL1 Silent p.Y384Y 0.32 TCGA-ZP-A9CY-01 15 81598333 81598333 T C IL16 Missense_Mutation p.S1169P 0.36 deleterious(0) probably_damaging(0.997) TCGA-ZP-A9CY-01 16 28074529 28074529 C T GSG1L Missense_Mutation p.A73T 0.09 tolerated(0.61) benign(0.052) TCGA-ZP-A9CY-01 16 29675057 29675057 C T SPN Missense_Mutation p.T3M 0.34 deleterious_low_confidence(0.03) unknown(0) TCGA-ZP-A9CY-01 16 70698645 70698645 C A MTSS1L Missense_Mutation p.A443S 0.18 tolerated(0.1) possibly_damaging(0.603) TCGA-ZP-A9CY-01 16 9892293 9892293 C T GRIN2A Missense_Mutation p.A733T 0.19 deleterious(0) probably_damaging(0.984) TCGA-ZP-A9CY-01 17 17919460 17919460 A G LRRC48 Missense_Mutation p.D470G 0.29 deleterious(0.02) probably_damaging(0.971) TCGA-ZP-A9CY-01 17 2290093 2290093 G T MNT 3'UTR 0.29 TCGA-ZP-A9CY-01 17 3336671 3336671 C T OR1E2 Silent p.A155A 0.14 TCGA-ZP-A9CY-01 17 59557244 59557244 C A TBX4 Silent p.I235I 0.11 TCGA-ZP-A9CY-01 19 16314322 16314322 A G AP1M1 Missense_Mutation p.H32R 0.30 tolerated(0.58) benign(0.008) TCGA-ZP-A9CY-01 19 20728081 20728081 C T ZNF737 Missense_Mutation p.E310K 0.05 tolerated(0.1) benign(0.145) TCGA-ZP-A9CY-01 19 41128482 41128482 C A LTBP4 Silent p.R1198R 0.34 TCGA-ZP-A9CY-01 19 41307313 41307313 G T EGLN2 Missense_Mutation p.R279L 0.25 deleterious(0) benign(0.44) TCGA-ZP-A9CY-01 19 53612770 53612770 T C ZNF415 Silent p.S176S 0.18 TCGA-ZP-A9CY-01 1 120345731 120345731 T C REG4 Missense_Mutation p.Y42C 0.31 deleterious(0) probably_damaging(0.997) TCGA-ZP-A9CY-01 1 165533154 165533154 T C LRRC52 3'UTR 0.35 TCGA-ZP-A9CY-01 1 223177664 223177664 C A DISP1 Missense_Mutation p.D975E 0.08 deleterious(0) probably_damaging(0.995) TCGA-ZP-A9CY-01 1 230492769 230492770 - T PGBD5 Frame_Shift_Ins p.I142Dfs*47 0.29 TCGA-ZP-A9CY-01 1 32937081 32937081 C T ZBTB8B Missense_Mutation p.R286C 0.16 deleterious(0.02) benign(0.009) TCGA-ZP-A9CY-01 1 34291374 34291374 G T CSMD2 Silent p.V305V 0.41 TCGA-ZP-A9CY-01 1 64672499 64672499 T A UBE2U Silent p.P67P 0.07 TCGA-ZP-A9CY-01 1 64672500 64672500 C G UBE2U Missense_Mutation p.P68A 0.08 deleterious(0.01) probably_damaging(1) TCGA-ZP-A9CY-01 1 70820530 70820530 T C HHLA3 5'UTR 0.38 TCGA-ZP-A9CY-01 1 75679669 75679669 G A SLC44A5 Missense_Mutation p.A603V 0.33 tolerated(0.58) benign(0.19) TCGA-ZP-A9CY-01 20 17596112 17596112 T C RRBP1 Silent p.L905L 0.46 TCGA-ZP-A9CY-01 20 62493842 62493842 C T ABHD16B Missense_Mutation p.L317F 0.36 deleterious(0) possibly_damaging(0.867) TCGA-ZP-A9CY-01 22 32827371 32827371 A G BPIFC Silent p.L394L 0.32 TCGA-ZP-A9CY-01 22 41751769 41751769 A G ZC3H7B Missense_Mutation p.K726R 0.38 tolerated(0.05) benign(0.104) TCGA-ZP-A9CY-01 2 130951447 130951447 A G TUBA3E Missense_Mutation p.V323A 0.27 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-ZP-A9CY-01 2 148684717 148684722 TGGATG - ACVR2A In_Frame_Del p.G473_C474del 0.33 TCGA-ZP-A9CY-01 2 168102782 168102782 A - XIRP2 Frame_Shift_Del p.E1628Kfs*8 0.27 TCGA-ZP-A9CY-01 2 196825326 196825326 C A DNAH7 Missense_Mutation p.R850L 0.30 deleterious(0) possibly_damaging(0.793) TCGA-ZP-A9CY-01 2 222365844 222365844 G C EPHA4 Missense_Mutation p.A291G 0.06 tolerated(0.22) benign(0.014) TCGA-ZP-A9CY-01 2 228147228 228147228 C T COL4A3 Missense_Mutation p.P879L 0.31 unknown(0) TCGA-ZP-A9CY-01 2 233001275 233001275 G T DIS3L2 Missense_Mutation p.A266S 0.36 deleterious(0.01) probably_damaging(0.984) TCGA-ZP-A9CY-01 2 240969050 240969050 T A OR6B2 Missense_Mutation p.D266V 0.39 tolerated(0.5) benign(0.216) TCGA-ZP-A9CY-01 2 7036225 7036225 A G RSAD2 3'UTR 0.18 TCGA-ZP-A9CY-01 3 124456869 124456886 TCTATCTGCTGATGTTTC - UMPS Nonsense_Mutation p.C255_S261delins* 0.22 TCGA-ZP-A9CY-01 3 127642185 127642185 T C KBTBD12 Missense_Mutation p.L94S 0.30 deleterious(0) probably_damaging(1) TCGA-ZP-A9CY-01 3 132241675 132241675 C T DNAJC13 Nonsense_Mutation p.R1893* 0.20 TCGA-ZP-A9CY-01 3 52855127 52855128 AA - ITIH4 Frame_Shift_Del p.F520Pfs*47 0.17 TCGA-ZP-A9CY-01 4 119953405 119953405 T C SYNPO2 Intron 0.33 TCGA-ZP-A9CY-01 4 138452550 138452550 T A PCDH18 Silent p.I231I 0.36 TCGA-ZP-A9CY-01 4 155505244 155505244 A G FGA 3'UTR 0.13 TCGA-ZP-A9CY-01 4 39109209 39109209 C A KLHL5 Missense_Mutation p.P562T 0.11 tolerated(0.05) probably_damaging(1) TCGA-ZP-A9CY-01 4 4421847 4421847 T A STX18 Missense_Mutation p.N308Y 0.33 deleterious(0.02) possibly_damaging(0.676) TCGA-ZP-A9CY-01 4 76797690 76797690 G A PPEF2 Missense_Mutation p.S357L 0.37 tolerated(0.06) benign(0.016) TCGA-ZP-A9CY-01 5 140787904 140787904 G T PCDHGB6 Silent p.S45S 0.12 TCGA-ZP-A9CY-01 5 140789789 140789789 G T PCDHGB6 Missense_Mutation p.D674Y 0.34 deleterious(0) probably_damaging(0.987) TCGA-ZP-A9CY-01 5 148406584 148406584 C A SH3TC2 Missense_Mutation p.R904L 0.03 tolerated(0.09) benign(0.44) TCGA-ZP-A9CY-01 5 168195176 168195176 G C SLIT3 Intron 0.46 TCGA-ZP-A9CY-01 5 176821180 176821180 G T SLC34A1 Missense_Mutation p.Q386H 0.34 tolerated(0.07) benign(0.015) TCGA-ZP-A9CY-01 5 1878820 1878820 G C IRX4 Missense_Mutation p.L275V 0.36 tolerated(0.13) possibly_damaging(0.851) TCGA-ZP-A9CY-01 5 33534965 33534965 T C ADAMTS12 Missense_Mutation p.N1527D 0.35 tolerated(0.07) possibly_damaging(0.608) TCGA-ZP-A9CY-01 5 5463067 5463067 A G KIAA0947 Missense_Mutation p.N1207S 0.04 tolerated(0.43) benign(0.023) TCGA-ZP-A9CY-01 5 56161727 56161727 C G MAP3K1 Missense_Mutation p.I408M 0.30 deleterious(0) possibly_damaging(0.798) TCGA-ZP-A9CY-01 5 60817140 60817140 A T ZSWIM6 Nonsense_Mutation p.K462* 0.18 TCGA-ZP-A9CY-01 5 60817151 60817151 G A ZSWIM6 Nonsense_Mutation p.W465* 0.19 TCGA-ZP-A9CY-01 5 68471253 68471253 A G CCNB1 Silent p.K324K 0.30 TCGA-ZP-A9CY-01 5 90078941 90078941 T A GPR98 Missense_Mutation p.V4411E 0.27 probably_damaging(0.942) TCGA-ZP-A9CY-01 6 134350236 134350236 G C SLC2A12 Missense_Mutation p.L243V 0.29 tolerated(0.64) benign(0.002) TCGA-ZP-A9CY-01 6 142738477 142738477 A T GPR126 Missense_Mutation p.E1002D 0.30 tolerated(0.59) benign(0.005) TCGA-ZP-A9CY-01 6 160183059 160183059 C A ACAT2 5'UTR 0.31 TCGA-ZP-A9CY-01 6 29641190 29641190 C T ZFP57 Missense_Mutation p.C233Y 0.30 deleterious(0) probably_damaging(1) TCGA-ZP-A9CY-01 6 31938745 31938745 G A DXO Missense_Mutation p.P179L 0.37 tolerated(0.12) benign(0.001) TCGA-ZP-A9CY-01 6 43473568 43473568 A G TJAP1 Missense_Mutation p.Q550R 0.06 deleterious(0) probably_damaging(0.993) TCGA-ZP-A9CY-01 6 51612813 51612813 T G PKHD1 Silent p.R3201R 0.03 TCGA-ZP-A9CY-01 6 74229110 74229110 C T EEF1A1 Missense_Mutation p.A92T 0.37 deleterious_low_confidence(0.02) benign(0.158) TCGA-ZP-A9CY-01 6 87724938 87724938 T C HTR1E 5'UTR 0.22 TCGA-ZP-A9CY-01 7 2689555 2689555 C T TTYH3 Silent p.S268S 0.07 TCGA-ZP-A9CY-01 7 74480396 74480417 TGTAAATTTCATTTTCGACCAC AT WBSCR16 Frame_Shift_Del p.V210Mfs*2 0.17 TCGA-ZP-A9CY-01 7 74766000 74766021 GTGGTCGAAAATGAAATTTACA AT AC118138.2 Intron 0.28 TCGA-ZP-A9CY-01 7 77408705 77408705 T A RSBN1L 3'UTR 0.07 TCGA-ZP-A9CY-01 7 81689806 81689806 G T CACNA2D1 Silent p.R273R 0.36 TCGA-ZP-A9CY-01 8 110509162 110509162 G C PKHD1L1 Missense_Mutation p.V3448L 0.33 tolerated(0.39) benign(0.002) TCGA-ZP-A9CY-01 8 29927547 29927547 G C TMEM66 Missense_Mutation p.A104G 0.34 deleterious(0.01) probably_damaging(0.984) TCGA-ZP-A9CY-01 8 56866505 56866505 A G LYN Missense_Mutation p.K251R 0.31 tolerated(0.7) benign(0.014) TCGA-ZP-A9CY-01 8 72967803 72967803 A G TRPA1 Missense_Mutation p.L466P 0.19 deleterious(0) probably_damaging(0.959) TCGA-ZP-A9CY-01 9 115337345 115337345 C T KIAA1958 Nonsense_Mutation p.Q329* 0.27 TCGA-ZP-A9CY-01 9 116303703 116303703 G T RGS3 Intron 0.35 TCGA-ZP-A9CY-01 9 137688730 137688730 G A COL5A1 Missense_Mutation p.G961R 0.28 unknown(0) TCGA-ZP-A9CY-01 9 140330564 140330564 G C ENTPD8 Silent p.V317V 0.35 TCGA-ZP-A9CY-01 9 34833806 34833806 A G FAM205B RNA 0.04 TCGA-ZP-A9CY-01 9 6015125 6015125 G T RANBP6 Missense_Mutation p.H161Q 0.29 tolerated(0.41) benign(0.09) TCGA-ZP-A9CY-01 9 730216 730216 T A KANK1 Missense_Mutation p.L955Q 0.39 tolerated(0.09) benign(0.022) TCGA-ZP-A9CY-01 9 78808227 78808227 C A PCSK5 Intron 0.04 TCGA-ZP-A9CY-01 X 107978082 107978082 C T IRS4 Missense_Mutation p.G498D 0.38 tolerated_low_confidence(0.07) unknown(0) TCGA-ZP-A9CY-01 X 122759851 122759851 G T THOC2 Missense_Mutation p.A990E 0.18 deleterious(0) benign(0.088) TCGA-ZP-A9CY-01 X 135429239 135429239 A G GPR112 Missense_Mutation p.E1125G 0.29 tolerated(0.14) benign(0.001) TCGA-ZP-A9CY-01 X 153991251 153991251 C T DKC1 Missense_Mutation p.A4V 0.35 deleterious_low_confidence(0.03) benign(0.001) TCGA-ZP-A9CY-01 X 25014097 25014097 T C POLA1 3'UTR 0.03 TCGA-ZP-A9CY-01 X 41379791 41379791 T A CASK Missense_Mutation p.H883L 0.42 deleterious(0) probably_damaging(0.988) TCGA-ZP-A9CY-01 X 53455601 53455616 AGAGACCTGAGGCCTA - RIBC1 Intron 0.23 TCGA-ZP-A9CY-01 X 53574709 53574709 T C HUWE1 Missense_Mutation p.T3521A 0.18 unknown(0) TCGA-ZP-A9CZ-01 10 52601663 52601663 T A A1CF Missense_Mutation p.E116D 0.37 tolerated(0.47) benign(0.024) TCGA-ZP-A9CZ-01 10 54042052 54042052 T C PRKG1 Missense_Mutation p.L562P 0.35 deleterious(0) probably_damaging(0.999) TCGA-ZP-A9CZ-01 10 98924583 98924583 G A SLIT1 Missense_Mutation p.R88W 0.26 deleterious(0) probably_damaging(0.956) TCGA-ZP-A9CZ-01 11 116692001 116692001 G C APOA4 Missense_Mutation p.A258G 0.45 tolerated(0.05) benign(0.222) TCGA-ZP-A9CZ-01 11 34680176 34680176 G A EHF Missense_Mutation p.G257D 0.29 deleterious(0) probably_damaging(1) TCGA-ZP-A9CZ-01 11 65828119 65828119 A G SF3B2 Missense_Mutation p.I566V 0.33 deleterious(0.03) benign(0.309) TCGA-ZP-A9CZ-01 11 76909563 76909563 G A MYO7A Missense_Mutation p.V1489I 0.30 tolerated(0.2) benign(0.397) TCGA-ZP-A9CZ-01 12 110924510 110924510 G A FAM216A Missense_Mutation p.R203K 0.21 deleterious_low_confidence(0.04) benign(0.05) TCGA-ZP-A9CZ-01 12 120031495 120031495 C T TMEM233 5'UTR 0.57 TCGA-ZP-A9CZ-01 12 122750971 122750971 C T VPS33A 5'UTR 0.44 TCGA-ZP-A9CZ-01 12 21799847 21799847 A C LDHB Missense_Mutation p.I78S 0.29 deleterious(0.02) benign(0.188) TCGA-ZP-A9CZ-01 12 52964526 52964526 G A KRT74 Missense_Mutation p.A312V 0.29 deleterious(0) possibly_damaging(0.474) TCGA-ZP-A9CZ-01 13 33591317 33591317 G A KL Missense_Mutation p.G247S 0.30 deleterious(0) probably_damaging(0.997) TCGA-ZP-A9CZ-01 13 53418597 53418597 C T PCDH8 3'UTR 0.57 TCGA-ZP-A9CZ-01 14 102549308 102549308 G A HSP90AA1 Intron 0.26 TCGA-ZP-A9CZ-01 14 106725343 106725343 A G IGHV3-23 Missense_Mutation p.I70T 0.22 deleterious_low_confidence(0.01) benign(0.113) TCGA-ZP-A9CZ-01 14 24845611 24845611 C T NFATC4 Missense_Mutation p.P786L 0.18 deleterious(0) benign(0.172) TCGA-ZP-A9CZ-01 14 58862667 58862667 C A TOMM20L 5'UTR 0.36 TCGA-ZP-A9CZ-01 14 67525478 67525478 T A GPHN Silent p.L373L 0.33 TCGA-ZP-A9CZ-01 16 10989526 10989526 A T CIITA Missense_Mutation p.E67V 0.26 deleterious(0) possibly_damaging(0.613) TCGA-ZP-A9CZ-01 16 22325438 22325438 A G POLR3E Missense_Mutation p.K171E 0.05 deleterious(0.01) benign(0.224) TCGA-ZP-A9CZ-01 16 3591684 3591684 C A NLRC3 3'UTR 0.40 TCGA-ZP-A9CZ-01 16 67613 67613 C T WASH4P Silent p.R146R 0.35 TCGA-ZP-A9CZ-01 16 81075037 81075037 G A ATMIN Missense_Mutation p.C138Y 0.45 deleterious(0) probably_damaging(0.994) TCGA-ZP-A9CZ-01 16 83999211 83999211 C T OSGIN1 Missense_Mutation p.R345W 0.09 tolerated(0.15) probably_damaging(0.937) TCGA-ZP-A9CZ-01 17 12921302 12921302 A T ELAC2 5'UTR 0.31 TCGA-ZP-A9CZ-01 17 19186882 19186882 C G EPN2 Silent p.T150T 0.29 TCGA-ZP-A9CZ-01 17 29588781 29588781 G A NF1 Missense_Mutation p.A1544T 0.28 deleterious(0) probably_damaging(0.98) TCGA-ZP-A9CZ-01 17 30321616 30321616 A G SUZ12 Missense_Mutation p.I491V 0.49 tolerated(0.1) benign(0.145) TCGA-ZP-A9CZ-01 17 61908427 61908427 G A PSMC5 Missense_Mutation p.M237I 0.41 deleterious(0.03) benign(0.403) TCGA-ZP-A9CZ-01 17 6920262 6920262 C A C17orf49 Missense_Mutation p.A148D 0.32 deleterious(0.05) probably_damaging(0.945) TCGA-ZP-A9CZ-01 18 42532830 42532830 A G SETBP1 Silent p.A1175A 0.05 TCGA-ZP-A9CZ-01 18 46476705 46476705 T C SMAD7 Silent p.G30G 0.07 TCGA-ZP-A9CZ-01 18 51904653 51904653 C T C18orf54 3'UTR 0.34 TCGA-ZP-A9CZ-01 19 3980917 3980917 G C EEF2 Missense_Mutation p.L358V 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-ZP-A9CZ-01 19 47219608 47219608 T A PRKD2 Missense_Mutation p.Y7F 0.18 tolerated_low_confidence(0.47) unknown(0) TCGA-ZP-A9CZ-01 19 54974339 54974339 C - LENG9 Frame_Shift_Del p.R146Pfs*114 0.21 TCGA-ZP-A9CZ-01 19 7528790 7528790 A C ARHGEF18 Silent p.R720R 0.05 TCGA-ZP-A9CZ-01 19 9075042 9075042 G C MUC16 Missense_Mutation p.T4135S 0.04 unknown(0) TCGA-ZP-A9CZ-01 1 11808647 11808647 G T AGTRAP Missense_Mutation p.G115V 0.42 deleterious(0) probably_damaging(0.995) TCGA-ZP-A9CZ-01 1 151016188 151016188 G C BNIPL Missense_Mutation p.R279P 0.18 deleterious(0.01) benign(0.042) TCGA-ZP-A9CZ-01 1 152816243 152816243 C A LCE6A 3'UTR 0.19 TCGA-ZP-A9CZ-01 1 167825481 167825481 C T ADCY10 Missense_Mutation p.G698D 0.05 tolerated(0.05) probably_damaging(0.98) TCGA-ZP-A9CZ-01 1 182026606 182026606 T C ZNF648 Silent p.V180V 0.30 TCGA-ZP-A9CZ-01 1 22156669 22156669 C A HSPG2 Intron 0.11 TCGA-ZP-A9CZ-01 1 32566142 32566142 C T TMEM39B Silent p.D405D 0.10 TCGA-ZP-A9CZ-01 1 62299331 62299331 C T INADL Silent p.D662D 0.19 TCGA-ZP-A9CZ-01 1 75626611 75626611 A G LHX8 3'UTR 0.32 TCGA-ZP-A9CZ-01 20 62843408 62843408 C T MYT1 Silent p.A478A 0.33 TCGA-ZP-A9CZ-01 22 21272198 21272198 G T CRKL 5'UTR 0.06 TCGA-ZP-A9CZ-01 22 21398501 21398501 C G AC002472.13 5'Flank 0.40 TCGA-ZP-A9CZ-01 22 38525570 38525570 C G PLA2G6 Splice_Site p.X360_splice 0.27 TCGA-ZP-A9CZ-01 22 40080333 40080333 G A CACNA1I Missense_Mutation p.A1953T 0.22 tolerated(0.31) possibly_damaging(0.483) TCGA-ZP-A9CZ-01 2 108453116 108453116 T C RGPD4 Missense_Mutation p.L44P 0.29 deleterious(0.01) possibly_damaging(0.902) TCGA-ZP-A9CZ-01 2 11733194 11733194 C T GREB1 Silent p.Y546Y 0.04 TCGA-ZP-A9CZ-01 2 170471112 170471112 G A PPIG Missense_Mutation p.G142E 0.33 deleterious(0) probably_damaging(1) TCGA-ZP-A9CZ-01 2 175201534 175201534 G T SP9 Missense_Mutation p.A241S 0.08 tolerated(0.52) possibly_damaging(0.515) TCGA-ZP-A9CZ-01 2 241700204 241700204 G T KIF1A Missense_Mutation p.D774E 0.37 tolerated(0.63) benign(0.148) TCGA-ZP-A9CZ-01 3 114027080 114027080 G A TIGIT 3'UTR 0.12 TCGA-ZP-A9CZ-01 3 169889099 169889099 T G PHC3 Intron 0.28 TCGA-ZP-A9CZ-01 3 45814090 45814090 C T SLC6A20 Silent p.A200A 0.40 TCGA-ZP-A9CZ-01 4 100495974 100495974 G C MTTP 5'UTR 0.32 TCGA-ZP-A9CZ-01 4 122833233 122833233 G A TRPC3 Nonsense_Mutation p.R453* 0.30 TCGA-ZP-A9CZ-01 4 3148618 3148618 C A HTT Missense_Mutation p.P1080T 0.04 benign(0.325) TCGA-ZP-A9CZ-01 5 134343827 134343827 A T CATSPER3 Missense_Mutation p.T225S 0.06 deleterious(0.01) probably_damaging(1) TCGA-ZP-A9CZ-01 5 137589591 137589591 T C GFRA3 Splice_Site p.X297_splice 0.03 TCGA-ZP-A9CZ-01 5 140188506 140188506 C T PCDHA4 Silent p.S578S 0.26 TCGA-ZP-A9CZ-01 5 153190694 153190694 G A GRIA1 Missense_Mutation p.R887Q 0.26 deleterious_low_confidence(0) possibly_damaging(0.612) TCGA-ZP-A9CZ-01 5 26915756 26915756 G A CDH9 Missense_Mutation p.P169S 0.47 deleterious(0.01) benign(0.415) TCGA-ZP-A9CZ-01 6 143823511 143823511 G A FUCA2 Missense_Mutation p.T315I 0.34 deleterious(0) probably_damaging(0.966) TCGA-ZP-A9CZ-01 6 33412344 33412344 T C SYNGAP1 Missense_Mutation p.Y1178H 0.28 tolerated(0.36) probably_damaging(0.97) TCGA-ZP-A9CZ-01 6 84303250 84303250 G A SNAP91 Missense_Mutation p.T548I 0.30 tolerated(0.19) benign(0.011) TCGA-ZP-A9CZ-01 7 130356523 130356523 A G TSGA13 Silent p.H212H 0.36 TCGA-ZP-A9CZ-01 7 40234654 40234654 T C SUGCT Missense_Mutation p.I167T 0.20 deleterious(0) probably_damaging(0.987) TCGA-ZP-A9CZ-01 7 88966180 88966180 T A ZNF804B Nonsense_Mutation p.L1295* 0.21 TCGA-ZP-A9CZ-01 8 142432342 142432342 T C PTP4A3 Translation_Start_Site p.M1? 0.33 deleterious(0) benign(0.145) TCGA-ZP-A9CZ-01 8 144873558 144873558 C T SCRIB Splice_Site p.X1608_splice 0.64 TCGA-ZP-A9CZ-01 9 87636176 87636176 T C NTRK2 Missense_Mutation p.C781R 0.22 deleterious(0) probably_damaging(0.988) TCGA-ZP-A9CZ-01 9 90534003 90534003 A T SPATA31C1 Intron 0.27 TCGA-ZP-A9CZ-01 X 101092559 101092559 A T NXF5 Silent p.P329P 0.71 TCGA-ZP-A9CZ-01 X 3235461 3235461 G C MXRA5 Silent p.T2087T 0.56 TCGA-ZP-A9D0-01 10 104404357 104404357 C G TRIM8 5'UTR 0.40 TCGA-ZP-A9D0-01 10 113915915 113915915 G A GPAM Intron 0.34 TCGA-ZP-A9D0-01 10 27313387 27313390 TCTT - ANKRD26 Frame_Shift_Del p.E1359* 0.37 TCGA-ZP-A9D0-01 10 51465688 51465688 G A AGAP7 Silent p.G256G 0.28 TCGA-ZP-A9D0-01 10 61832026 61832026 C A ANK3 Silent p.S2871S 0.42 TCGA-ZP-A9D0-01 10 70482318 70482319 - A CCAR1 Frame_Shift_Ins p.A20Sfs*74 0.23 TCGA-ZP-A9D0-01 10 91099865 91099865 A - IFIT3 Frame_Shift_Del p.N485Tfs*5 0.25 TCGA-ZP-A9D0-01 10 96039770 96039770 C G PLCE1 Intron 0.47 TCGA-ZP-A9D0-01 11 26725171 26725171 A T SLC5A12 Missense_Mutation p.V243E 0.39 deleterious(0) probably_damaging(0.95) TCGA-ZP-A9D0-01 11 68525016 68525016 A T CPT1A 3'UTR 0.37 TCGA-ZP-A9D0-01 11 88242143 88242143 T A GRM5 Missense_Mutation p.S1086C 0.32 deleterious_low_confidence(0.01) benign(0.312) TCGA-ZP-A9D0-01 12 101779827 101779827 G C UTP20 Missense_Mutation p.E2762Q 0.35 tolerated(0.1) probably_damaging(0.929) TCGA-ZP-A9D0-01 12 110782702 110782716 GCTGCTACCGTGGGT - ATP2A2 In_Frame_Del p.T847_A851del 0.24 TCGA-ZP-A9D0-01 12 133780472 133780472 A G ZNF268 Missense_Mutation p.S734G 0.20 tolerated(0.12) probably_damaging(0.995) TCGA-ZP-A9D0-01 12 8800725 8800725 A T MFAP5 Missense_Mutation p.C162S 0.34 deleterious(0) probably_damaging(0.998) TCGA-ZP-A9D0-01 13 31036826 31036826 G C HMGB1 Missense_Mutation p.S107C 0.38 deleterious(0) benign(0.355) TCGA-ZP-A9D0-01 13 45914920 45914920 T A TPT1 Missense_Mutation p.H10L 0.49 tolerated(0.37) benign(0.01) TCGA-ZP-A9D0-01 14 57755815 57755815 G A AP5M1 3'UTR 0.25 TCGA-ZP-A9D0-01 14 64600832 64600832 C A SYNE2 Missense_Mutation p.L4854M 0.42 probably_damaging(1) TCGA-ZP-A9D0-01 14 80271457 80271457 A G NRXN3 Silent p.P936P 0.42 TCGA-ZP-A9D0-01 16 2867793 2867812 CCATCCGAGGACCATGCGGC - PRSS21 Splice_Site p.X31_splice 0.16 TCGA-ZP-A9D0-01 16 3018021 3018021 A C KREMEN2 Nonstop_Mutation p.*463Cext*31 0.09 TCGA-ZP-A9D0-01 17 1577803 1577803 C T PRPF8 Missense_Mutation p.A1078T 0.34 tolerated(0.48) benign(0.005) TCGA-ZP-A9D0-01 17 33680389 33680389 C T SLFN11 Missense_Mutation p.V630I 0.19 tolerated(1) benign(0.017) TCGA-ZP-A9D0-01 17 33875988 33875988 T C SLFN14 Missense_Mutation p.K670R 0.39 tolerated(0.12) benign(0.003) TCGA-ZP-A9D0-01 17 41166200 41166200 G C IFI35 Missense_Mutation p.D251H 0.24 deleterious(0) probably_damaging(0.999) TCGA-ZP-A9D0-01 17 63533642 63533642 G C AXIN2 Silent p.G504G 0.38 TCGA-ZP-A9D0-01 18 32833559 32833559 C G ZSCAN30 Missense_Mutation p.G447A 0.46 deleterious(0.01) possibly_damaging(0.687) TCGA-ZP-A9D0-01 19 15740285 15740285 A C CYP4F8 3'Flank 0.27 TCGA-ZP-A9D0-01 19 23938228 23938228 C A ZNF681 Missense_Mutation p.L43F 0.32 deleterious(0) probably_damaging(0.961) TCGA-ZP-A9D0-01 19 38188849 38188849 T C ZNF607 3'UTR 0.41 TCGA-ZP-A9D0-01 19 45810854 45810854 C G CKM Missense_Mutation p.G278R 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-ZP-A9D0-01 1 1140775 1140775 G C TNFRSF18 Silent p.P95P 0.34 TCGA-ZP-A9D0-01 1 1229084 1229084 G A ACAP3 Missense_Mutation p.R789C 0.62 deleterious(0) probably_damaging(0.997) TCGA-ZP-A9D0-01 1 180991796 180991796 T A STX6 Missense_Mutation p.D5V 0.19 deleterious(0) possibly_damaging(0.775) TCGA-ZP-A9D0-01 1 183602268 183602268 T C ARPC5 Silent p.L58L 0.17 TCGA-ZP-A9D0-01 1 207748949 207748949 C T CR1 Silent p.L1487L 0.20 TCGA-ZP-A9D0-01 1 247024559 247024559 A C AHCTF1 Silent p.P1267P 0.44 TCGA-ZP-A9D0-01 1 40881993 40881993 C T SMAP2 Missense_Mutation p.T276M 0.68 deleterious(0) possibly_damaging(0.474) TCGA-ZP-A9D0-01 20 3723019 3723019 G C HSPA12B Missense_Mutation p.S77T 0.33 deleterious(0.01) probably_damaging(0.976) TCGA-ZP-A9D0-01 20 47262565 47262565 C T PREX1 Silent p.S1112S 0.52 TCGA-ZP-A9D0-01 20 55025670 55025670 C - CASS4 Frame_Shift_Del p.Q193Sfs*28 0.26 TCGA-ZP-A9D0-01 22 19511459 19511459 C T CLDN5 Missense_Mutation p.C192Y 0.30 deleterious(0) probably_damaging(0.932) TCGA-ZP-A9D0-01 22 47059927 47059927 C T GRAMD4 Silent p.R210R 0.37 TCGA-ZP-A9D0-01 2 125555843 125555843 C T CNTNAP5 Missense_Mutation p.L1054F 0.25 tolerated(0.08) benign(0.12) TCGA-ZP-A9D0-01 2 133542785 133542785 C A NCKAP5 Missense_Mutation p.R533S 0.41 deleterious(0.03) benign(0.039) TCGA-ZP-A9D0-01 2 166852580 166852580 A G SCN1A Silent p.Y1508Y 0.37 TCGA-ZP-A9D0-01 2 186670241 186670241 C T FSIP2 Missense_Mutation p.S5492F 0.37 probably_damaging(0.933) TCGA-ZP-A9D0-01 2 232578007 232578007 A G PTMA 3'UTR 0.23 TCGA-ZP-A9D0-01 2 27322890 27322890 A T KHK 3'UTR 0.25 TCGA-ZP-A9D0-01 2 29222198 29222198 G C FAM179A Missense_Mutation p.L97F 0.38 tolerated(0.09) possibly_damaging(0.878) TCGA-ZP-A9D0-01 2 73250320 73250320 C T SFXN5 Silent p.K91K 0.32 TCGA-ZP-A9D0-01 3 110837591 110837591 T G PVRL3 Silent p.T197T 0.36 TCGA-ZP-A9D0-01 3 138664910 138664910 G C FOXL2 Missense_Mutation p.Q219E 0.40 deleterious(0) benign(0.042) TCGA-ZP-A9D0-01 3 15123877 15123877 G A ZFYVE20 Silent p.Y279Y 0.07 TCGA-ZP-A9D0-01 3 47281541 47281548 ACTGGCTG - KIF9 Intron 0.58 TCGA-ZP-A9D0-01 3 65361605 65361605 G T MAGI1 Missense_Mutation p.A1004D 0.06 deleterious(0.04) probably_damaging(0.991) TCGA-ZP-A9D0-01 4 111543434 111543434 G T PITX2 Missense_Mutation p.D61E 0.46 tolerated(0.96) benign(0.086) TCGA-ZP-A9D0-01 4 15688697 15688697 G A FAM200B Missense_Mutation p.D33N 0.35 tolerated_low_confidence(0.29) benign(0.01) TCGA-ZP-A9D0-01 4 56865790 56865790 G T CEP135 Missense_Mutation p.L753F 0.33 tolerated(0.16) probably_damaging(0.948) TCGA-ZP-A9D0-01 5 121187819 121187819 C A FTMT Missense_Mutation p.S54Y 0.42 tolerated(0.24) benign(0.003) TCGA-ZP-A9D0-01 5 139908010 139908010 C T ANKHD1 Missense_Mutation p.P1827S 0.40 benign(0.028) TCGA-ZP-A9D0-01 5 140801283 140801283 G A PCDHGA11 Silent p.V163V 0.28 TCGA-ZP-A9D0-01 5 153570579 153570579 G A GALNT10 Silent p.A51A 0.29 TCGA-ZP-A9D0-01 5 172359459 172359459 A C ERGIC1 Missense_Mutation p.I188L 0.38 tolerated(0.23) benign(0.048) TCGA-ZP-A9D0-01 5 177036620 177036620 G A B4GALT7 Missense_Mutation p.G303D 0.38 tolerated(1) possibly_damaging(0.511) TCGA-ZP-A9D0-01 5 86668007 86668007 C G RASA1 Missense_Mutation p.R591G 0.29 deleterious(0.02) probably_damaging(0.953) TCGA-ZP-A9D0-01 5 94991973 94991973 A T RFESD Missense_Mutation p.Y198F 0.36 tolerated(0.23) benign(0.061) TCGA-ZP-A9D0-01 6 122744789 122744789 A G HSF2 Silent p.L378L 0.36 TCGA-ZP-A9D0-01 7 150710398 150710405 GAACGCCC - NOS3 Frame_Shift_Del p.N1063Afs*17 0.33 TCGA-ZP-A9D0-01 7 151329170 151329170 C A PRKAG2 Nonsense_Mutation p.E247* 0.20 TCGA-ZP-A9D0-01 8 105025746 105025746 A G RIMS2 Missense_Mutation p.T1041A 0.29 tolerated_low_confidence(0.42) benign(0.005) TCGA-ZP-A9D0-01 8 114449230 114449230 G A CSMD3 5'UTR 0.38 TCGA-ZP-A9D0-01 8 124266377 124266377 G C ZHX1 Missense_Mutation p.Q604E 0.37 tolerated(1) benign(0.003) TCGA-ZP-A9D0-01 8 25240239 25240239 A G DOCK5 Missense_Mutation p.Q1359R 0.54 tolerated(0.07) benign(0.013) TCGA-ZP-A9D0-01 9 113170387 113170387 C T SVEP1 Missense_Mutation p.C2498Y 0.54 probably_damaging(1) TCGA-ZP-A9D0-01 9 136272184 136272184 G A REXO4 Nonsense_Mutation p.Q388* 0.65 TCGA-ZP-A9D0-01 9 79319694 79319694 T G PRUNE2 Missense_Mutation p.D2499A 0.45 tolerated(0.14) benign(0.382) TCGA-ZP-A9D0-01 X 123197040 123197040 T C STAG2 Silent p.T602T 0.31 TCGA-ZP-A9D0-01 X 30873586 30873586 T A TAB3 Missense_Mutation p.M66L 0.33 tolerated(1) benign(0.005) TCGA-ZP-A9D1-01 10 107006989 107006989 C A SORCS3 Missense_Mutation p.S1002Y 0.36 tolerated(0.11) probably_damaging(0.982) TCGA-ZP-A9D1-01 10 116603573 116603573 A G FAM160B1 Missense_Mutation p.K297R 0.11 tolerated(0.34) benign(0.008) TCGA-ZP-A9D1-01 10 122263103 122263103 G C PPAPDC1A Intron 0.17 TCGA-ZP-A9D1-01 10 135009312 135009312 C A KNDC1 Missense_Mutation p.A574D 0.18 deleterious(0.05) benign(0.401) TCGA-ZP-A9D1-01 10 23729363 23729363 G C OTUD1 Missense_Mutation p.S326T 0.07 tolerated(0.11) probably_damaging(0.955) TCGA-ZP-A9D1-01 10 72357836 72357836 T G PRF1 Silent p.P547P 0.10 TCGA-ZP-A9D1-01 10 7318928 7318928 A T SFMBT2 Missense_Mutation p.S266T 0.14 tolerated(0.29) benign(0.001) TCGA-ZP-A9D1-01 10 75407632 75407632 C T SYNPO2L Missense_Mutation p.R593H 0.14 tolerated(0.14) benign(0.004) TCGA-ZP-A9D1-01 11 103060402 103060402 T C DYNC2H1 Missense_Mutation p.Y2432H 0.09 possibly_damaging(0.849) TCGA-ZP-A9D1-01 11 118376851 118376851 C T KMT2A Missense_Mutation p.S3415L 0.22 benign(0.004) TCGA-ZP-A9D1-01 11 118650350 118650350 A T DDX6 Silent p.S120S 0.18 TCGA-ZP-A9D1-01 11 45246411 45246411 G A PRDM11 Missense_Mutation p.M462I 0.34 tolerated_low_confidence(0.58) benign(0.001) TCGA-ZP-A9D1-01 11 48142579 48142579 A G PTPRJ Missense_Mutation p.K126R 0.42 tolerated(0.27) benign(0.405) TCGA-ZP-A9D1-01 11 60670109 60670109 T C PRPF19 Silent p.P136P 0.15 TCGA-ZP-A9D1-01 11 621353 621353 G A CDHR5 Silent p.L204L 0.25 TCGA-ZP-A9D1-01 11 64600763 64600763 T C CDC42BPG Missense_Mutation p.K891E 0.31 deleterious(0) probably_damaging(0.998) TCGA-ZP-A9D1-01 11 66367109 66367109 T C CCS Splice_Site p.X143_splice 0.42 TCGA-ZP-A9D1-01 11 73068372 73068372 G C ARHGEF17 Missense_Mutation p.G1363R 0.11 deleterious(0.01) possibly_damaging(0.798) TCGA-ZP-A9D1-01 12 10312560 10312560 T C OLR1 Silent p.Q247Q 0.47 TCGA-ZP-A9D1-01 12 104682706 104682706 C A TXNRD1 Intron 0.45 TCGA-ZP-A9D1-01 12 108168997 108168997 T C ASCL4 Missense_Mutation p.M2T 0.42 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-ZP-A9D1-01 12 121154759 121154759 T G UNC119B Missense_Mutation p.F186C 0.04 deleterious(0) probably_damaging(1) TCGA-ZP-A9D1-01 12 124821697 124821697 G A NCOR2 Missense_Mutation p.P1906L 0.40 benign(0.048) TCGA-ZP-A9D1-01 12 15656872 15656872 A G PTPRO Missense_Mutation p.E379G 0.51 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-ZP-A9D1-01 12 20769307 20769307 A G PDE3A Silent p.A471A 0.07 TCGA-ZP-A9D1-01 12 32491901 32491901 G T BICD1 Missense_Mutation p.V918L 0.56 tolerated_low_confidence(0.17) probably_damaging(0.938) TCGA-ZP-A9D1-01 12 41419025 41419025 C T CNTN1 Missense_Mutation p.A866V 0.06 tolerated(0.07) benign(0.387) TCGA-ZP-A9D1-01 12 49433342 49433342 T A KMT2D Missense_Mutation p.Q2702L 0.45 probably_damaging(0.978) TCGA-ZP-A9D1-01 12 53089605 53089605 A T KRT77 Missense_Mutation p.V289E 0.04 deleterious(0) possibly_damaging(0.901) TCGA-ZP-A9D1-01 12 70934703 70934703 A T PTPRB Silent p.A1843A 0.05 TCGA-ZP-A9D1-01 12 88534999 88534999 A T CEP290 Nonsense_Mutation p.L29* 0.21 TCGA-ZP-A9D1-01 13 26152991 26152991 A T ATP8A2 Missense_Mutation p.K607N 0.43 tolerated(0.42) benign(0.085) TCGA-ZP-A9D1-01 13 32776494 32776494 T C FRY Missense_Mutation p.I1283T 0.46 deleterious(0) benign(0.297) TCGA-ZP-A9D1-01 13 52971697 52971697 T C THSD1 Missense_Mutation p.T231A 0.32 tolerated(0.23) benign(0.009) TCGA-ZP-A9D1-01 14 102446137 102446137 T C DYNC1H1 Silent p.I200I 0.17 TCGA-ZP-A9D1-01 14 107083476 107083476 A C IGHV4-59 Missense_Mutation p.V43G 0.18 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-ZP-A9D1-01 14 64494342 64494342 T C SYNE2 Missense_Mutation p.L2182S 0.20 probably_damaging(0.999) TCGA-ZP-A9D1-01 14 90783115 90783115 T C NRDE2 Missense_Mutation p.N72D 0.42 tolerated(0.92) benign(0.001) TCGA-ZP-A9D1-01 15 54305889 54305889 A G UNC13C Silent p.L263L 0.36 TCGA-ZP-A9D1-01 15 89003046 89003046 T C MRPL46 Missense_Mutation p.Y213C 0.23 deleterious(0) probably_damaging(0.971) TCGA-ZP-A9D1-01 16 11991860 11991860 A G GSPT1 Silent p.L129L 0.28 TCGA-ZP-A9D1-01 16 15224267 15224267 T A RP11-1186N24.5 RNA 0.29 TCGA-ZP-A9D1-01 16 20084946 20084946 C A GPR139 5'UTR 0.21 TCGA-ZP-A9D1-01 16 20489989 20489989 C G ACSM2A Missense_Mutation p.S424C 0.31 deleterious(0.04) benign(0.074) TCGA-ZP-A9D1-01 16 3712858 3712858 T C TRAP1 Intron 0.35 TCGA-ZP-A9D1-01 16 69353433 69353433 G T VPS4A Missense_Mutation p.G203W 0.19 deleterious(0) probably_damaging(0.999) TCGA-ZP-A9D1-01 17 12608447 12608447 T C MYOCD Silent p.L20L 0.29 TCGA-ZP-A9D1-01 17 27030972 27030972 G A PROCA1 Silent p.I205I 0.31 TCGA-ZP-A9D1-01 17 35300131 35300131 A G LHX1 Silent p.P308P 0.21 TCGA-ZP-A9D1-01 17 38936060 38936060 G A KRT27 Silent p.N246N 0.29 TCGA-ZP-A9D1-01 17 39890781 39890781 C A HAP1 Nonsense_Mutation p.E36* 0.26 TCGA-ZP-A9D1-01 17 64961144 64961144 C T CACNG4 Silent p.H39H 0.29 TCGA-ZP-A9D1-01 17 65689073 65689073 T C PITPNC1 3'UTR 0.29 TCGA-ZP-A9D1-01 17 68176004 68176004 C T KCNJ2 3'UTR 0.18 TCGA-ZP-A9D1-01 17 72842250 72842250 A T GRIN2C Missense_Mutation p.W769R 0.22 deleterious(0) probably_damaging(0.998) TCGA-ZP-A9D1-01 17 76399940 76399940 T C PGS1 Missense_Mutation p.L391P 0.27 deleterious(0) possibly_damaging(0.677) TCGA-ZP-A9D1-01 18 28992917 28992917 T - DSG4 Frame_Shift_Del p.L847* 0.24 TCGA-ZP-A9D1-01 18 47796315 47796315 C G MBD1 Intron 0.62 TCGA-ZP-A9D1-01 18 47809307 47809307 G A CXXC1 Missense_Mutation p.R585C 0.18 deleterious(0.04) benign(0.166) TCGA-ZP-A9D1-01 18 64211362 64211362 T A CDH19 Missense_Mutation p.T354S 0.40 tolerated(0.06) benign(0.097) TCGA-ZP-A9D1-01 18 6956653 6956653 T G LAMA1 Silent p.P2692P 0.26 TCGA-ZP-A9D1-01 18 76757118 76757118 C T SALL3 Silent p.I1233I 0.33 TCGA-ZP-A9D1-01 19 13617016 13617016 A G CACNA1A Missense_Mutation p.M8T 0.40 benign(0.092) TCGA-ZP-A9D1-01 19 1510211 1510211 A C ADAMTSL5 Missense_Mutation p.L100R 0.12 tolerated(0.06) possibly_damaging(0.507) TCGA-ZP-A9D1-01 19 19906192 19906192 A T ZNF506 Silent p.T168T 0.32 TCGA-ZP-A9D1-01 19 3913803 3913803 T C ATCAY Missense_Mutation p.L305P 0.29 deleterious(0) probably_damaging(1) TCGA-ZP-A9D1-01 19 41117271 41117271 G A LTBP4 Missense_Mutation p.R742H 0.14 tolerated(0.11) benign(0.063) TCGA-ZP-A9D1-01 19 41858864 41858864 C T TGFB1 Missense_Mutation p.G29E 0.34 deleterious(0.04) possibly_damaging(0.576) TCGA-ZP-A9D1-01 19 44933761 44933761 G T ZNF229 Missense_Mutation p.H399N 0.31 deleterious(0) probably_damaging(0.992) TCGA-ZP-A9D1-01 19 45873616 45873616 G A ERCC2 Intron 0.28 TCGA-ZP-A9D1-01 19 53912049 53912049 A C ZNF765 Missense_Mutation p.N414T 0.04 deleterious(0.03) probably_damaging(0.948) TCGA-ZP-A9D1-01 19 55869581 55869581 A G FAM71E2 Silent p.T885T 0.34 TCGA-ZP-A9D1-01 19 56388508 56388508 C T NLRP4 Missense_Mutation p.T891M 0.24 deleterious(0) benign(0.276) TCGA-ZP-A9D1-01 19 58469865 58469865 C A C19orf18 3'UTR 0.25 TCGA-ZP-A9D1-01 1 102271685 102271685 T C OLFM3 Missense_Mutation p.T216A 0.46 tolerated(0.13) benign(0.253) TCGA-ZP-A9D1-01 1 111494486 111494486 G T LRIF1 Silent p.I340I 0.49 TCGA-ZP-A9D1-01 1 118168182 118168182 T C FAM46C 3'UTR 0.56 TCGA-ZP-A9D1-01 1 120839624 120839624 G A FAM72B 5'UTR 0.16 TCGA-ZP-A9D1-01 1 1341096 1341096 A G MRPL20 Intron 0.67 TCGA-ZP-A9D1-01 1 147092530 147092530 T C BCL9 Missense_Mutation p.S857P 0.30 deleterious(0) probably_damaging(0.958) TCGA-ZP-A9D1-01 1 150671067 150671067 T C HORMAD1 3'UTR 0.45 TCGA-ZP-A9D1-01 1 151778915 151778915 C T RORC 3'Flank 0.19 TCGA-ZP-A9D1-01 1 152083351 152083351 C A TCHH Missense_Mutation p.R781L 0.27 unknown(0) TCGA-ZP-A9D1-01 1 152281292 152281292 G A FLG Missense_Mutation p.H2024Y 0.12 benign(0.415) TCGA-ZP-A9D1-01 1 152636635 152636635 C A LCE2D Silent p.P18P 0.21 TCGA-ZP-A9D1-01 1 154931793 154931793 T A PYGO2 Missense_Mutation p.Q228L 0.23 tolerated(0.22) benign(0.403) TCGA-ZP-A9D1-01 1 155292300 155292300 T C RUSC1 Missense_Mutation p.W246R 0.26 deleterious_low_confidence(0) benign(0.235) TCGA-ZP-A9D1-01 1 157504366 157504366 A T FCRL5 Intron 0.19 TCGA-ZP-A9D1-01 1 171765995 171765995 A G METTL13 3'UTR 0.57 TCGA-ZP-A9D1-01 1 17555182 17555182 G T PADI1 Nonsense_Mutation p.E239* 0.27 TCGA-ZP-A9D1-01 1 175916344 175916344 T A RFWD2 Missense_Mutation p.Q722L 0.22 deleterious(0.01) benign(0.104) TCGA-ZP-A9D1-01 1 177199111 177199111 T A BRINP2 Silent p.A33A 0.31 TCGA-ZP-A9D1-01 1 178485749 178485749 G T TEX35 Splice_Site p.X73_splice 0.25 TCGA-ZP-A9D1-01 1 182517465 182517465 G A RGSL1 Missense_Mutation p.V895I 0.24 deleterious(0.02) probably_damaging(0.983) TCGA-ZP-A9D1-01 1 186329450 186329450 T C TPR Silent p.A382A 0.11 TCGA-ZP-A9D1-01 1 192548402 192548402 G T RGS1 Missense_Mutation p.D194Y 0.46 deleterious(0) possibly_damaging(0.755) TCGA-ZP-A9D1-01 1 200550340 200550340 A G KIF14 Silent p.Y1108Y 0.20 TCGA-ZP-A9D1-01 1 205500795 205500795 A T CDK18 3'UTR 0.33 TCGA-ZP-A9D1-01 1 207245694 207245694 A T PFKFB2 Missense_Mutation p.D499V 0.25 benign(0.026) TCGA-ZP-A9D1-01 1 207643282 207643282 C A CR2 Missense_Mutation p.P354T 0.12 deleterious(0) probably_damaging(1) TCGA-ZP-A9D1-01 1 223853118 223853118 C T CAPN8 Silent p.R77R 0.28 TCGA-ZP-A9D1-01 1 238048573 238048573 A T ZP4 Silent p.P401P 0.47 TCGA-ZP-A9D1-01 1 240601442 240601442 C A FMN2 Silent p.I1664I 0.26 TCGA-ZP-A9D1-01 1 46751145 46751145 T C LRRC41 Missense_Mutation p.I462V 0.50 tolerated(1) benign(0.068) TCGA-ZP-A9D1-01 1 5927958 5927958 T G NPHP4 Splice_Site p.X1106_splice 0.53 TCGA-ZP-A9D1-01 1 8073423 8073423 C A ERRFI1 Missense_Mutation p.R412S 0.37 deleterious(0.02) possibly_damaging(0.521) TCGA-ZP-A9D1-01 20 25478971 25478971 G T NINL Missense_Mutation p.F348L 0.37 deleterious(0) possibly_damaging(0.901) TCGA-ZP-A9D1-01 20 31643273 31643273 G T BPIFB3 Missense_Mutation p.W15L 0.14 deleterious(0.04) possibly_damaging(0.641) TCGA-ZP-A9D1-01 20 32207337 32207337 A G CBFA2T2 Silent p.T154T 0.21 TCGA-ZP-A9D1-01 20 42343871 42343871 A T MYBL2 Missense_Mutation p.E641V 0.39 deleterious(0.03) possibly_damaging(0.501) TCGA-ZP-A9D1-01 20 4708634 4708634 A G PRND 3'UTR 0.23 TCGA-ZP-A9D1-01 20 58348348 58348348 T C PHACTR3 Missense_Mutation p.F256L 0.24 tolerated(0.61) benign(0.006) TCGA-ZP-A9D1-01 21 11026740 11026740 C T BAGE2 RNA 0.02 TCGA-ZP-A9D1-01 21 41032874 41032874 A G B3GALT5 Missense_Mutation p.N130D 0.15 deleterious(0) probably_damaging(1) TCGA-ZP-A9D1-01 21 43504289 43504289 T C UMODL1 Missense_Mutation p.C139R 0.27 deleterious(0) benign(0.034) TCGA-ZP-A9D1-01 21 47692553 47692553 T G MCM3AP Missense_Mutation p.K796T 0.23 deleterious(0.01) possibly_damaging(0.681) TCGA-ZP-A9D1-01 22 20862470 20862470 T C MED15 Intron 0.21 TCGA-ZP-A9D1-01 22 25627596 25627596 T A CRYBB2 Missense_Mutation p.Y159N 0.22 deleterious(0) probably_damaging(1) TCGA-ZP-A9D1-01 22 29130702 29130702 C T CHEK2 Missense_Mutation p.R3Q 0.36 tolerated_low_confidence(0.11) benign(0.005) TCGA-ZP-A9D1-01 22 35661318 35661318 T C HMGXB4 Missense_Mutation p.Y313H 0.18 deleterious(0) probably_damaging(0.994) TCGA-ZP-A9D1-01 22 42280874 42280874 C T SREBF2 Silent p.S689S 0.23 TCGA-ZP-A9D1-01 2 119699782 119699782 A G MARCO 5'UTR 0.30 TCGA-ZP-A9D1-01 2 130865580 130865580 A T POTEF Splice_Site p.X376_splice 0.04 TCGA-ZP-A9D1-01 2 149543989 149543989 A G EPC2 3'UTR 0.42 TCGA-ZP-A9D1-01 2 152473927 152473927 T A NEB Missense_Mutation p.D3711V 0.32 probably_damaging(1) TCGA-ZP-A9D1-01 2 152534508 152534508 T A NEB Missense_Mutation p.K1150M 0.23 probably_damaging(0.982) TCGA-ZP-A9D1-01 2 155303175 155303175 T C GALNT13 Intron 0.34 TCGA-ZP-A9D1-01 2 165557052 165557052 T G COBLL1 Missense_Mutation p.E519D 0.21 deleterious(0.04) benign(0.015) TCGA-ZP-A9D1-01 2 1926174 1926174 G A MYT1L Missense_Mutation p.A456V 0.40 tolerated(0.06) benign(0.086) TCGA-ZP-A9D1-01 2 198953586 198953586 C A PLCL1 Missense_Mutation p.A907E 0.27 deleterious(0) probably_damaging(0.951) TCGA-ZP-A9D1-01 2 234078761 234078761 A T INPP5D Missense_Mutation p.H569L 0.22 deleterious(0) possibly_damaging(0.905) TCGA-ZP-A9D1-01 2 238287845 238287845 A G COL6A3 Missense_Mutation p.L644S 0.20 probably_damaging(1) TCGA-ZP-A9D1-01 2 25819006 25819006 C T DTNB Silent p.G184G 0.17 TCGA-ZP-A9D1-01 2 56098002 56098002 C A EFEMP1 Missense_Mutation p.Q391H 0.30 tolerated(0.54) benign(0.219) TCGA-ZP-A9D1-01 2 62451341 62451341 A T B3GNT2 3'UTR 0.20 TCGA-ZP-A9D1-01 2 8919137 8919137 G T KIDINS220 Missense_Mutation p.R835S 0.37 deleterious(0.01) probably_damaging(1) TCGA-ZP-A9D1-01 3 107097090 107097090 C A CCDC54 Missense_Mutation p.T219N 0.51 tolerated(0.05) benign(0.039) TCGA-ZP-A9D1-01 3 167159803 167159803 A G SERPINI2 3'UTR 0.27 TCGA-ZP-A9D1-01 3 183776324 183776324 C A HTR3C Silent p.A223A 0.26 TCGA-ZP-A9D1-01 4 185033941 185033941 C A ENPP6 Missense_Mutation p.V293L 0.14 tolerated(0.08) possibly_damaging(0.822) TCGA-ZP-A9D1-01 4 39201126 39201126 A G WDR19 Silent p.G145G 0.13 TCGA-ZP-A9D1-01 4 40123848 40123848 A G N4BP2 Missense_Mutation p.I1373V 0.22 deleterious(0.02) benign(0.036) TCGA-ZP-A9D1-01 4 42965143 42965143 T A GRXCR1 Missense_Mutation p.Y207N 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-ZP-A9D1-01 4 7045509 7045509 G A TADA2B Missense_Mutation p.G68D 0.39 tolerated(0.54) benign(0.014) TCGA-ZP-A9D1-01 5 128369147 128369147 T A SLC27A6 3'UTR 0.42 TCGA-ZP-A9D1-01 5 137485368 137485368 A G BRD8 Missense_Mutation p.L1080S 0.33 tolerated(0.06) benign(0.045) TCGA-ZP-A9D1-01 5 140562308 140562308 G C PCDHB16 Missense_Mutation p.E58D 0.34 tolerated_low_confidence(0.1) benign(0.064) TCGA-ZP-A9D1-01 5 140605647 140605647 T C PCDHB14 3'UTR 0.26 TCGA-ZP-A9D1-01 5 140731163 140731163 C A PCDHGB1 Missense_Mutation p.P446T 0.44 deleterious(0) probably_damaging(0.992) TCGA-ZP-A9D1-01 5 140763436 140763436 G T PCDHGA7 Missense_Mutation p.G324C 0.36 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-ZP-A9D1-01 5 168727673 168727673 G C SLIT3 Missense_Mutation p.A14G 0.32 tolerated(0.4) benign(0.002) TCGA-ZP-A9D1-01 5 169267834 169267834 T C DOCK2 Missense_Mutation p.M926T 0.39 deleterious(0.03) possibly_damaging(0.623) TCGA-ZP-A9D1-01 5 175530270 175530270 C T FAM153B Silent p.N158N 0.20 TCGA-ZP-A9D1-01 5 19571838 19571838 G C CDH18 Missense_Mutation p.T368S 0.29 deleterious(0.04) possibly_damaging(0.489) TCGA-ZP-A9D1-01 5 23510134 23510134 A G PRDM9 Missense_Mutation p.Q100R 0.29 tolerated_low_confidence(0.08) benign(0) TCGA-ZP-A9D1-01 5 43486847 43486847 A G C5orf34 3'UTR 0.25 TCGA-ZP-A9D1-01 5 64064874 64064874 A T CWC27 5'UTR 0.35 TCGA-ZP-A9D1-01 5 68651607 68651607 T C TAF9 Silent p.L65L 0.39 TCGA-ZP-A9D1-01 6 123696761 123696761 T A TRDN Missense_Mutation p.Q421L 0.20 tolerated_low_confidence(0.09) benign(0.017) TCGA-ZP-A9D1-01 6 128388829 128388829 C T PTPRK Silent p.G664G 0.24 TCGA-ZP-A9D1-01 6 130762934 130762934 A C TMEM200A Missense_Mutation p.N456T 0.27 tolerated(0.05) benign(0.086) TCGA-ZP-A9D1-01 6 159654122 159654122 A G FNDC1 Missense_Mutation p.R860G 0.25 deleterious_low_confidence(0.04) unknown(0) TCGA-ZP-A9D1-01 6 33414444 33414444 C A SYNGAP1 Silent p.S1225S 0.21 TCGA-ZP-A9D1-01 6 43226800 43226800 T A TTBK1 Silent p.P347P 0.23 TCGA-ZP-A9D1-01 6 66005906 66005906 G A EYS Missense_Mutation p.H625Y 0.22 deleterious(0.03) benign(0.019) TCGA-ZP-A9D1-01 6 69349286 69349286 G C BAI3 Missense_Mutation p.C240S 0.21 tolerated(0.1) possibly_damaging(0.879) TCGA-ZP-A9D1-01 6 80228679 80228679 T C LCA5 5'UTR 0.26 TCGA-ZP-A9D1-01 6 90408665 90408665 T C MDN1 Silent p.P3029P 0.26 TCGA-ZP-A9D1-01 7 117375412 117375412 A G CTTNBP2 Missense_Mutation p.L1200S 0.15 deleterious(0) probably_damaging(0.999) TCGA-ZP-A9D1-01 7 141795408 141795408 C A MGAM Missense_Mutation p.S1605Y 0.17 deleterious(0) possibly_damaging(0.847) TCGA-ZP-A9D1-01 7 148484107 148484107 C T CUL1 Silent p.D458D 0.39 TCGA-ZP-A9D1-01 7 148484108 148484108 A G CUL1 Missense_Mutation p.K459E 0.39 deleterious(0) probably_damaging(0.914) TCGA-ZP-A9D1-01 7 150325099 150325099 T C GIMAP6 Missense_Mutation p.H196R 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-ZP-A9D1-01 7 16505374 16505374 C T SOSTDC1 5'UTR 0.35 TCGA-ZP-A9D1-01 7 31904592 31904592 C A PDE1C Missense_Mutation p.Q298H 0.27 deleterious(0.01) probably_damaging(1) TCGA-ZP-A9D1-01 7 72936276 72936276 G T BAZ1B 5'UTR 0.38 TCGA-ZP-A9D1-01 7 99674959 99674959 C T ZNF3 Missense_Mutation p.V8I 0.33 tolerated_low_confidence(0.14) benign(0) TCGA-ZP-A9D1-01 8 20112702 20112702 G A LZTS1 5'UTR 0.54 TCGA-ZP-A9D1-01 8 53596502 53596502 T C RB1CC1 Missense_Mutation p.N48S 0.50 tolerated(0.61) probably_damaging(0.986) TCGA-ZP-A9D1-01 8 62496560 62496560 A G ASPH Silent p.N335N 0.10 TCGA-ZP-A9D1-01 8 72111545 72111545 A T EYA1 3'UTR 0.20 TCGA-ZP-A9D1-01 8 95900175 95900175 A G CCNE2 Missense_Mutation p.F194L 0.27 deleterious(0) probably_damaging(0.999) TCGA-ZP-A9D1-01 9 34568951 34568951 C A CNTFR Missense_Mutation p.C10F 0.32 tolerated(0.14) unknown(0) TCGA-ZP-A9D1-01 9 35680975 35680975 G A CA9 Missense_Mutation p.G445R 0.11 tolerated(0.2) benign(0.154) TCGA-ZP-A9D1-01 9 37588927 37588927 G C TOMM5 Intron 0.30 TCGA-ZP-A9D1-01 9 90219980 90219980 C T DAPK1 Silent p.R58R 0.49 TCGA-ZP-A9D1-01 X 100125805 100125805 T A NOX1 Splice_Site p.X16_splice 0.31 TCGA-ZP-A9D1-01 X 119677623 119677623 T C CUL4B Silent p.E423E 0.33 TCGA-ZP-A9D1-01 X 12516855 12516855 A T FRMPD4 Missense_Mutation p.Q33L 0.39 tolerated(0.09) possibly_damaging(0.597) TCGA-ZP-A9D1-01 X 130218250 130218250 T A ARHGAP36 Missense_Mutation p.L206Q 0.30 deleterious(0) benign(0.191) TCGA-ZP-A9D1-01 X 144905172 144905172 G T SLITRK2 Missense_Mutation p.R410M 0.29 deleterious(0) probably_damaging(1) TCGA-ZP-A9D1-01 X 144906450 144906450 T A SLITRK2 Missense_Mutation p.L836Q 0.32 deleterious(0) probably_damaging(0.994) TCGA-ZP-A9D1-01 X 153691942 153691942 C T PLXNA3 Missense_Mutation p.L486F 0.20 deleterious(0) benign(0.398) TCGA-ZP-A9D1-01 X 19367462 19367462 T G PDHA1 Missense_Mutation p.F68L 0.29 tolerated(0.26) benign(0.062) TCGA-ZP-A9D1-01 X 49646154 49646154 T C USP27X Missense_Mutation p.L415S 0.27 deleterious(0) probably_damaging(0.965) TCGA-ZP-A9D1-01 X 69497340 69497340 A T ARR3 Silent p.S190S 0.30 TCGA-ZP-A9D2-01 10 112839625 112839625 C A ADRA2A 3'UTR 0.44 TCGA-ZP-A9D2-01 10 27538938 27538938 T C RP11-85G18.6 Intron 0.44 TCGA-ZP-A9D2-01 10 34671515 34671515 T C PARD3 Missense_Mutation p.Y451C 0.31 deleterious(0.01) possibly_damaging(0.697) TCGA-ZP-A9D2-01 10 5136645 5136645 C T AKR1C3 Silent p.S3S 0.34 TCGA-ZP-A9D2-01 10 63661468 63661468 G C ARID5B 5'UTR 0.33 TCGA-ZP-A9D2-01 10 79397504 79397504 C T KCNMA1 5'Flank 0.26 TCGA-ZP-A9D2-01 10 81273596 81273596 A G EIF5AL1 3'UTR 0.09 TCGA-ZP-A9D2-01 10 96163102 96163102 G T TBC1D12 Missense_Mutation p.E244D 0.37 tolerated_low_confidence(0.15) benign(0.043) TCGA-ZP-A9D2-01 11 2434047 2434047 G A TRPM5 Silent p.P764P 0.31 TCGA-ZP-A9D2-01 11 59949192 59949192 T C MS4A6A Silent p.S31S 0.35 TCGA-ZP-A9D2-01 12 104513301 104513301 T A NFYB 3'UTR 0.38 TCGA-ZP-A9D2-01 12 130648052 130648052 C T FZD10 Missense_Mutation p.R189C 0.12 tolerated(0.14) possibly_damaging(0.72) TCGA-ZP-A9D2-01 12 133435779 133435779 G A CHFR Silent p.V274V 0.31 TCGA-ZP-A9D2-01 12 56993613 56993613 T C BAZ2A Missense_Mutation p.K1684R 0.29 tolerated(0.14) possibly_damaging(0.67) TCGA-ZP-A9D2-01 12 96641039 96641039 G T ELK3 Nonsense_Mutation p.E177* 0.41 TCGA-ZP-A9D2-01 15 80215526 80215526 G A C15ORF37 Missense_Mutation p.G3D 0.27 tolerated_low_confidence(0.13) unknown(0) TCGA-ZP-A9D2-01 16 23724450 23724450 A G ERN2 Missense_Mutation p.F68S 0.33 tolerated_low_confidence(0.33) benign(0.006) TCGA-ZP-A9D2-01 16 69368984 69368984 T C COG8 Missense_Mutation p.I285V 0.33 tolerated(0.07) benign(0.341) TCGA-ZP-A9D2-01 16 89348575 89348575 T C ANKRD11 Missense_Mutation p.K1459E 0.29 benign(0.345) TCGA-ZP-A9D2-01 17 43555419 43555419 T C PLEKHM1 Missense_Mutation p.N48S 0.40 deleterious(0) probably_damaging(0.996) TCGA-ZP-A9D2-01 17 48227118 48227118 G A PPP1R9B Missense_Mutation p.P252L 0.22 tolerated(0.32) benign(0.079) TCGA-ZP-A9D2-01 17 6024018 6024018 G A WSCD1 3'UTR 0.59 TCGA-ZP-A9D2-01 17 62492649 62492649 C A POLG2 Missense_Mutation p.R146S 0.45 deleterious(0.01) probably_damaging(0.92) TCGA-ZP-A9D2-01 17 62522209 62522209 C T CEP95 Missense_Mutation p.A348V 0.18 tolerated(0.33) benign(0.002) TCGA-ZP-A9D2-01 17 7577099 7577099 C T TP53 Missense_Mutation p.R280K 0.48 deleterious(0.04) possibly_damaging(0.83) TCGA-ZP-A9D2-01 18 46812938 46812938 G A DYM Missense_Mutation p.A271V 0.36 tolerated(0.28) benign(0.002) TCGA-ZP-A9D2-01 18 77474550 77474550 G A CTDP1 Missense_Mutation p.G364R 0.30 tolerated(0.16) benign(0.001) TCGA-ZP-A9D2-01 19 10221280 10221280 G T PPAN Nonsense_Mutation p.E341* 0.32 TCGA-ZP-A9D2-01 19 14519705 14519705 T C DDX39A 3'UTR 0.34 TCGA-ZP-A9D2-01 19 21607547 21607547 C T ZNF493 Nonsense_Mutation p.R696* 0.31 TCGA-ZP-A9D2-01 19 44740511 44740511 A T ZNF227 Missense_Mutation p.Q643L 0.36 tolerated(0.05) probably_damaging(0.995) TCGA-ZP-A9D2-01 19 55756722 55756722 G A PPP6R1 Nonsense_Mutation p.Q155* 0.21 TCGA-ZP-A9D2-01 19 9060294 9060294 G T MUC16 Missense_Mutation p.S9051Y 0.29 unknown(0) TCGA-ZP-A9D2-01 1 112999349 112999364 CACTGTCTCCCAGCAG - CTTNBP2NL Frame_Shift_Del p.S414Pfs*5 0.55 TCGA-ZP-A9D2-01 1 114524021 114524021 G T OLFML3 Missense_Mutation p.W284L 0.06 deleterious(0) probably_damaging(1) TCGA-ZP-A9D2-01 1 153233515 153233515 C T LOR Silent p.G30G 0.05 TCGA-ZP-A9D2-01 1 156918128 156918128 G A ARHGEF11 Silent p.T696T 0.14 TCGA-ZP-A9D2-01 1 167944101 167944101 A G DCAF6 Missense_Mutation p.N96D 0.51 deleterious(0) probably_damaging(0.991) TCGA-ZP-A9D2-01 1 170003616 170003616 A T KIFAP3 Silent p.L213L 0.23 TCGA-ZP-A9D2-01 1 203698746 203698746 G T ATP2B4 Intron 0.41 TCGA-ZP-A9D2-01 1 204985578 204985578 T C NFASC Missense_Mutation p.Y1212H 0.24 deleterious(0) unknown(0) TCGA-ZP-A9D2-01 1 205131199 205131199 T C DSTYK Missense_Mutation p.S595G 0.26 deleterious(0.02) benign(0.051) TCGA-ZP-A9D2-01 1 229600489 229600489 G T NUP133 Nonsense_Mutation p.C811* 0.19 TCGA-ZP-A9D2-01 1 51440054 51440054 A C CDKN2C 3'UTR 0.69 TCGA-ZP-A9D2-01 20 43052656 43052656 A T HNF4A Splice_Site p.X298_splice 0.37 TCGA-ZP-A9D2-01 20 50140194 50140194 C T NFATC2 Missense_Mutation p.G196S 0.42 tolerated(0.77) benign(0.421) TCGA-ZP-A9D2-01 22 17308821 17308821 T G HSFY1P1 RNA 0.41 TCGA-ZP-A9D2-01 22 19754071 19754071 G T TBX1 Missense_Mutation p.G390V 0.40 deleterious_low_confidence(0.05) benign(0.057) TCGA-ZP-A9D2-01 22 24106453 24106453 T C C22orf15 Missense_Mutation p.I40T 0.32 deleterious(0.01) benign(0.206) TCGA-ZP-A9D2-01 2 203168226 203168226 A G NOP58 3'UTR 0.62 TCGA-ZP-A9D2-01 2 89278129 89278129 A T IGKV3-7 Missense_Mutation p.I69N 0.73 deleterious(0) probably_damaging(0.989) TCGA-ZP-A9D2-01 2 95719156 95719156 G A MAL Missense_Mutation p.V140M 0.65 tolerated(0.22) benign(0.269) TCGA-ZP-A9D2-01 3 148925166 148925166 A C CP Missense_Mutation p.N340K 0.30 deleterious(0.01) possibly_damaging(0.753) TCGA-ZP-A9D2-01 3 194353944 194353944 T C TMEM44 Translation_Start_Site p.M1? 0.31 deleterious_low_confidence(0) benign(0.043) TCGA-ZP-A9D2-01 3 194369468 194369468 T A LSG1 Missense_Mutation p.R495S 0.32 tolerated(0.55) benign(0.026) TCGA-ZP-A9D2-01 3 24019158 24019158 G T NR1D2 3'UTR 0.50 TCGA-ZP-A9D2-01 3 42750482 42750482 C A CCDC13 Missense_Mutation p.G713V 0.31 deleterious(0) benign(0.004) TCGA-ZP-A9D2-01 4 111397874 111397874 T C ENPEP Missense_Mutation p.Y102H 0.52 deleterious(0) probably_damaging(1) TCGA-ZP-A9D2-01 4 2664933 2664933 A C FAM193A Missense_Mutation p.E375A 0.56 deleterious_low_confidence(0.03) benign(0.107) TCGA-ZP-A9D2-01 5 140515199 140515199 T A PCDHB5 Silent p.T61T 0.37 TCGA-ZP-A9D2-01 5 14304637 14304637 A G TRIO Missense_Mutation p.D479G 0.17 benign(0.444) TCGA-ZP-A9D2-01 5 3596440 3596440 C A IRX1 Missense_Mutation p.P74H 0.14 tolerated(0.67) probably_damaging(0.953) TCGA-ZP-A9D2-01 5 40854692 40854692 A G CARD6 3'UTR 0.78 TCGA-ZP-A9D2-01 5 457080 457080 G A EXOC3 Missense_Mutation p.V375M 0.63 tolerated(0.2) probably_damaging(0.993) TCGA-ZP-A9D2-01 6 101073148 101073148 G A ASCC3 Missense_Mutation p.R1569C 0.29 deleterious(0) benign(0.032) TCGA-ZP-A9D2-01 6 167705003 167705003 T C UNC93A Missense_Mutation p.L9P 0.38 deleterious(0.02) probably_damaging(0.982) TCGA-ZP-A9D2-01 6 26247104 26247104 A G HIST1H4G Silent p.T34T 0.35 TCGA-ZP-A9D2-01 6 30672226 30672226 A G MDC1 Silent p.L1578L 0.13 TCGA-ZP-A9D2-01 6 43316238 43316238 C - ZNF318 Frame_Shift_Del p.A966Qfs*27 0.17 TCGA-ZP-A9D2-01 7 103251167 103251167 T C RELN Missense_Mutation p.I995V 0.33 tolerated(0.05) benign(0.011) TCGA-ZP-A9D2-01 7 142460804 142460804 C T PRSS1 Missense_Mutation p.P226L 0.39 deleterious(0.03) probably_damaging(0.996) TCGA-ZP-A9D2-01 7 150068831 150068835 CCACC - REPIN1 Frame_Shift_Del p.H225Sfs*33 0.25 TCGA-ZP-A9D2-01 7 1510839 1510839 T C INTS1 Missense_Mutation p.S2093G 0.26 tolerated(0.32) benign(0.129) TCGA-ZP-A9D2-01 7 20199854 20199854 C A MACC1 Missense_Mutation p.D44Y 0.30 tolerated(0.06) benign(0.001) TCGA-ZP-A9D2-01 7 31618002 31618002 T C CCDC129 Missense_Mutation p.L401S 0.40 deleterious(0) probably_damaging(0.938) TCGA-ZP-A9D2-01 7 7712977 7712977 C T RPA3 Intron 0.78 TCGA-ZP-A9D2-01 7 81335698 81335698 G T HGF Missense_Mutation p.H554Q 0.29 tolerated(0.48) benign(0.1) TCGA-ZP-A9D2-01 8 101153292 101153292 T G FBXO43 Missense_Mutation p.E397A 0.30 deleterious(0) probably_damaging(0.968) TCGA-ZP-A9D2-01 8 113599446 113599446 G C CSMD3 Missense_Mutation p.A1245G 0.39 deleterious(0.05) benign(0.142) TCGA-ZP-A9D2-01 8 1952449 1952449 A T KBTBD11 3'UTR 0.32 TCGA-ZP-A9D2-01 8 22884792 22884792 G A TNFRSF10B Nonsense_Mutation p.R264* 0.48 TCGA-ZP-A9D2-01 8 96168172 96168172 T G PLEKHF2 3'UTR 0.31 TCGA-ZP-A9D2-01 9 109691665 109691665 G A ZNF462 Silent p.E1824E 0.34 TCGA-ZP-A9D4-01 10 121339462 121339462 A C TIAL1 Silent p.S161S 0.31 TCGA-ZP-A9D4-01 10 43609005 43609005 G A RET Silent p.R587R 0.52 TCGA-ZP-A9D4-01 10 79397504 79397504 C T KCNMA1 5'Flank 0.27 TCGA-ZP-A9D4-01 11 105850471 105850472 - A GRIA4 3'UTR 0.21 TCGA-ZP-A9D4-01 11 111592590 111592590 C T SIK2 Missense_Mutation p.L661F 0.32 tolerated(1) benign(0) TCGA-ZP-A9D4-01 11 118963733 118963733 T C HMBS Splice_Site p.X304_splice 0.46 TCGA-ZP-A9D4-01 11 12281400 12281400 C G MICAL2 Missense_Mutation p.S1097C 0.34 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-ZP-A9D4-01 11 406869 406869 A T SIGIRR Missense_Mutation p.L285M 0.42 deleterious(0.03) possibly_damaging(0.877) TCGA-ZP-A9D4-01 12 7293899 7293899 A G CLSTN3 Missense_Mutation p.Y462C 0.41 deleterious(0) probably_damaging(0.996) TCGA-ZP-A9D4-01 13 38211276 38211276 G T TRPC4 Missense_Mutation p.P905T 0.46 tolerated_low_confidence(0.55) benign(0.047) TCGA-ZP-A9D4-01 14 21167519 21167519 T G AL163636.6 Missense_Mutation p.L31R 0.43 deleterious_low_confidence(0.05) unknown(0) TCGA-ZP-A9D4-01 15 28419720 28419734 GTGCCATTGCCCTGC CTGG HERC2 Frame_Shift_Del p.Q3288Hfs*6 0.19 TCGA-ZP-A9D4-01 15 28419734 28419734 C G HERC2 Missense_Mutation p.Q3288H 0.29 probably_damaging(0.995) TCGA-ZP-A9D4-01 15 35084698 35084698 G T ACTC1 Missense_Mutation p.A176D 0.11 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-ZP-A9D4-01 15 45694823 45694823 G C SPATA5L1 Missense_Mutation p.D66H 0.35 deleterious(0) possibly_damaging(0.826) TCGA-ZP-A9D4-01 15 63069030 63069030 T C TLN2 Missense_Mutation p.M1812T 0.47 tolerated(0.84) benign(0) TCGA-ZP-A9D4-01 15 73660429 73660429 G A HCN4 Silent p.A61A 0.45 TCGA-ZP-A9D4-01 16 17235129 17235129 C T XYLT1 Missense_Mutation p.D490N 0.49 tolerated(0.07) probably_damaging(0.986) TCGA-ZP-A9D4-01 17 47590457 47590457 T G NGFR 3'UTR 0.38 TCGA-ZP-A9D4-01 17 76887957 76887957 G A DDC8 Missense_Mutation p.T210M 0.29 tolerated(0.13) benign(0.021) TCGA-ZP-A9D4-01 18 19429164 19429164 G T MIB1 Missense_Mutation p.V801L 0.47 tolerated(0.44) benign(0.001) TCGA-ZP-A9D4-01 18 334824 334824 G T COLEC12 Silent p.G578G 0.48 TCGA-ZP-A9D4-01 19 31770531 31770531 G C TSHZ3 Missense_Mutation p.C56W 0.26 tolerated(0.19) possibly_damaging(0.506) TCGA-ZP-A9D4-01 19 37117613 37117613 A G ZNF382 Missense_Mutation p.K272E 0.40 tolerated(1) probably_damaging(0.993) TCGA-ZP-A9D4-01 19 37904717 37904717 C A ZNF569 Missense_Mutation p.Q281H 0.36 tolerated(0.38) probably_damaging(0.999) TCGA-ZP-A9D4-01 19 39437164 39437164 C G CTC-360G5.8 Missense_Mutation p.V74L 0.44 tolerated_low_confidence(0.74) benign(0.001) TCGA-ZP-A9D4-01 19 44570689 44570689 A G ZNF223 Silent p.Q236Q 0.48 TCGA-ZP-A9D4-01 19 44739935 44739935 T G ZNF227 Nonsense_Mutation p.L451* 0.35 TCGA-ZP-A9D4-01 19 46971671 46971671 C G PNMAL1 3'UTR 0.31 TCGA-ZP-A9D4-01 19 52222514 52222514 C T HAS1 Missense_Mutation p.R216H 0.43 deleterious(0) probably_damaging(1) TCGA-ZP-A9D4-01 19 53995222 53995222 A T ZNF813 Missense_Mutation p.Y579F 0.42 tolerated(0.09) benign(0.169) TCGA-ZP-A9D4-01 19 7709578 7709584 GCGGCGG - STXBP2 Frame_Shift_Del p.A396Cfs*20 0.22 TCGA-ZP-A9D4-01 1 150131451 150131451 G A PLEKHO1 Silent p.E321E 0.05 TCGA-ZP-A9D4-01 1 159847189 159847189 C T CCDC19 Missense_Mutation p.A370T 0.22 tolerated(0.12) benign(0.05) TCGA-ZP-A9D4-01 1 242277198 242277198 G T PLD5 Missense_Mutation p.T355N 0.58 tolerated(0.55) benign(0.004) TCGA-ZP-A9D4-01 21 40550541 40550541 C G PSMG1 Missense_Mutation p.Q163H 0.44 deleterious(0.03) probably_damaging(0.94) TCGA-ZP-A9D4-01 21 45746820 45746820 C T PFKL 3'UTR 0.35 TCGA-ZP-A9D4-01 22 43634957 43634957 G A SCUBE1 Missense_Mutation p.T244M 0.36 deleterious(0) probably_damaging(0.97) TCGA-ZP-A9D4-01 22 46501636 46501636 C - FLJ27365 Intron 0.30 TCGA-ZP-A9D4-01 2 155295175 155295175 A G GALNT13 Silent p.G489G 0.40 TCGA-ZP-A9D4-01 2 179399862 179399862 C T TTN Missense_Mutation p.R33827H 0.35 TCGA-ZP-A9D4-01 2 186672932 186672932 C T FSIP2 Missense_Mutation p.P6389L 0.43 probably_damaging(0.972) TCGA-ZP-A9D4-01 2 196619175 196619175 A G DNAH7 Missense_Mutation p.F3884L 0.41 deleterious(0) probably_damaging(1) TCGA-ZP-A9D4-01 2 210698727 210698727 G T UNC80 Missense_Mutation p.G926V 0.45 possibly_damaging(0.636) TCGA-ZP-A9D4-01 2 228194472 228194472 G T MFF Missense_Mutation p.G4V 0.30 tolerated_low_confidence(0.05) benign(0.031) TCGA-ZP-A9D4-01 2 241421602 241421602 C G ANKMY1 Silent p.G872G 0.25 TCGA-ZP-A9D4-01 2 61147184 61147184 G A REL Missense_Mutation p.G288S 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-ZP-A9D4-01 2 74642190 74642190 C A C2orf81 Missense_Mutation p.A345S 0.45 tolerated(0.31) benign(0.311) TCGA-ZP-A9D4-01 2 85039487 85039487 A G DNAH6 Missense_Mutation p.K3921R 0.43 tolerated(0.16) possibly_damaging(0.717) TCGA-ZP-A9D4-01 2 96690055 96690055 C G GPAT2 Missense_Mutation p.R567T 0.08 tolerated(0.15) benign(0.402) TCGA-ZP-A9D4-01 3 118948707 118948707 C T B4GALT4 Silent p.V80V 0.41 TCGA-ZP-A9D4-01 3 120389301 120389301 C A HGD Missense_Mutation p.W85C 0.41 deleterious(0.02) benign(0.088) TCGA-ZP-A9D4-01 3 121258426 121258426 T C POLQ Missense_Mutation p.Q162R 0.39 deleterious(0.01) probably_damaging(0.99) TCGA-ZP-A9D4-01 3 15468097 15468097 G C METTL6 5'UTR 0.44 TCGA-ZP-A9D4-01 3 37340443 37340443 T C GOLGA4 Silent p.L334L 0.38 TCGA-ZP-A9D4-01 3 41266107 41266107 T G CTNNB1 Missense_Mutation p.I35S 0.39 deleterious(0) possibly_damaging(0.852) TCGA-ZP-A9D4-01 3 52084785 52084785 G C DUSP7 3'UTR 0.38 TCGA-ZP-A9D4-01 3 52406261 52406261 A G DNAH1 Missense_Mutation p.T2229A 0.42 possibly_damaging(0.738) TCGA-ZP-A9D4-01 4 122301709 122301709 G T QRFPR Silent p.R32R 0.43 TCGA-ZP-A9D4-01 4 145580921 145580921 T C HHIP Silent p.L254L 0.39 TCGA-ZP-A9D4-01 4 148802993 148802993 A G ARHGAP10 Missense_Mutation p.D315G 0.05 tolerated(0.24) probably_damaging(0.968) TCGA-ZP-A9D4-01 4 156137509 156137509 G T NPY2R 3'UTR 0.27 TCGA-ZP-A9D4-01 4 169208296 169208296 G A DDX60 Silent p.T414T 0.36 TCGA-ZP-A9D4-01 4 169209405 169209405 T C DDX60 Missense_Mutation p.N368S 0.38 deleterious(0.01) benign(0.354) TCGA-ZP-A9D4-01 4 44449630 44449630 T C KCTD8 Missense_Mutation p.Q304R 0.54 tolerated(0.18) possibly_damaging(0.452) TCGA-ZP-A9D4-01 4 55564533 55564533 C T KIT Missense_Mutation p.P141S 0.29 deleterious(0) probably_damaging(1) TCGA-ZP-A9D4-01 4 7056279 7056279 A G TADA2B Missense_Mutation p.E254G 0.39 tolerated(0.08) benign(0.037) TCGA-ZP-A9D4-01 4 72205022 72205022 C T SLC4A4 Intron 0.39 TCGA-ZP-A9D4-01 4 74275199 74275199 C A ALB Missense_Mutation p.P204T 0.43 tolerated(0.15) benign(0.014) TCGA-ZP-A9D4-01 5 1294294 1294294 T G TERT Missense_Mutation p.K236T 0.73 tolerated(0.07) possibly_damaging(0.534) TCGA-ZP-A9D4-01 5 1295161 1295161 T G TERT 5'UTR 0.70 TCGA-ZP-A9D4-01 5 139908468 139908468 G A ANKHD1 Silent p.V1979V 0.79 TCGA-ZP-A9D4-01 5 150282729 150282729 C T ZNF300 Missense_Mutation p.E13K 0.05 tolerated(0.66) benign(0) TCGA-ZP-A9D4-01 5 156482260 156482260 C T HAVCR1 Missense_Mutation p.G111R 0.32 deleterious(0.05) probably_damaging(0.968) TCGA-ZP-A9D4-01 5 38921880 38921880 C T OSMR Silent p.S583S 0.49 TCGA-ZP-A9D4-01 5 44809645 44809645 C T MRPS30 Missense_Mutation p.A194V 0.43 tolerated(0.71) benign(0.003) TCGA-ZP-A9D4-01 5 54320628 54320628 C T GZMK Nonsense_Mutation p.Q69* 0.31 TCGA-ZP-A9D4-01 5 76934463 76934463 A C OTP 5'UTR 0.46 TCGA-ZP-A9D4-01 5 892720 892720 C T BRD9 Splice_Site p.X18_splice 0.04 TCGA-ZP-A9D4-01 5 912081 912081 C T TRIP13 Silent p.I330I 0.13 TCGA-ZP-A9D4-01 6 119297186 119297186 G A FAM184A Missense_Mutation p.H827Y 0.30 tolerated(0.05) possibly_damaging(0.474) TCGA-ZP-A9D4-01 6 159457462 159457462 C T TAGAP Silent p.S531S 0.37 TCGA-ZP-A9D4-01 6 31937616 31937616 T A DXO 3'UTR 0.33 TCGA-ZP-A9D4-01 6 55441922 55441922 G A HMGCLL1 Missense_Mutation p.S51F 0.05 tolerated_low_confidence(0.11) benign(0) TCGA-ZP-A9D4-01 7 64389451 64389451 T G ZNF273 3'UTR 0.39 TCGA-ZP-A9D4-01 8 33318937 33318937 A G FUT10 Missense_Mutation p.S12P 0.67 tolerated_low_confidence(0.17) benign(0.023) TCGA-ZP-A9D4-01 8 53573155 53573155 C T RB1CC1 Splice_Site p.X563_splice 0.69 TCGA-ZP-A9D4-01 8 65291785 65291785 C T MIR124-2 RNA 0.25 TCGA-ZP-A9D4-01 8 7698704 7698704 T A DEFB104A Silent p.R69R 0.24 TCGA-ZP-A9D4-01 9 100849923 100849923 G A TRIM14 Silent p.D386D 0.42 TCGA-ZP-A9D4-01 9 113252044 113252044 G T SVEP1 Missense_Mutation p.H606N 0.29 benign(0.102) TCGA-ZP-A9D4-01 9 121929597 121929597 C T BRINP1 Missense_Mutation p.G684D 0.05 tolerated(0.17) benign(0.076) TCGA-ZP-A9D4-01 9 123370235 123370235 G C MEGF9 Missense_Mutation p.P381A 0.34 tolerated(0.23) benign(0.122) TCGA-ZP-A9D4-01 9 125920368 125920368 T C STRBP Missense_Mutation p.Y323C 0.30 deleterious(0.01) benign(0.286) TCGA-ZP-A9D4-01 9 132566402 132566402 G C TOR1B Missense_Mutation p.E84Q 0.41 tolerated(0.33) benign(0.098) TCGA-ZP-A9D4-01 9 139925156 139925156 C T FUT7 3'UTR 0.06 TCGA-ZP-A9D4-01 9 20986401 20986401 G T FOCAD Missense_Mutation p.V1615L 0.35 tolerated(0.43) benign(0.002) TCGA-ZP-A9D4-01 9 33935719 33935719 G T UBAP2 Intron 0.45 TCGA-ZP-A9D4-01 9 84564389 84564389 C T RP11-383M4.6 Intron 0.51 TCGA-ZP-A9D4-01 X 12632900 12632900 G A FRMPD4 Missense_Mutation p.G108S 0.41 tolerated(0.06) probably_damaging(0.996) TCGA-ZP-A9D4-01 X 76938720 76938720 A G ATRX Silent p.N676N 0.36 TCGA-ZS-A9CD-01 10 101945277 101945277 T A ERLIN1 Missense_Mutation p.Y36F 0.20 deleterious(0.01) probably_damaging(0.954) TCGA-ZS-A9CD-01 10 124712495 124712495 C T C10orf88 Missense_Mutation p.C73Y 0.21 deleterious(0) probably_damaging(0.911) TCGA-ZS-A9CD-01 10 128973669 128973669 G A FAM196A Silent p.L331L 0.20 TCGA-ZS-A9CD-01 10 27406578 27406578 A C YME1L1 Missense_Mutation p.I606S 0.12 deleterious(0) possibly_damaging(0.821) TCGA-ZS-A9CD-01 10 90438430 90438430 A T LIPF Nonsense_Mutation p.K407* 0.29 TCGA-ZS-A9CD-01 11 110007343 110007343 C T ZC3H12C Intron 0.28 TCGA-ZS-A9CD-01 11 119996560 119996560 G A TRIM29 Missense_Mutation p.P391L 0.31 deleterious(0.01) possibly_damaging(0.77) TCGA-ZS-A9CD-01 11 19955146 19955146 G C NAV2 Silent p.V475V 0.32 TCGA-ZS-A9CD-01 11 19955147 19955147 G T NAV2 Missense_Mutation p.G476C 0.33 deleterious(0) possibly_damaging(0.895) TCGA-ZS-A9CD-01 11 55322138 55322138 T A OR4C15 Missense_Mutation p.L119Q 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ZS-A9CD-01 11 5686301 5686301 C A TRIM5 Missense_Mutation p.G407V 0.25 tolerated(0.12) benign(0.148) TCGA-ZS-A9CD-01 11 57367761 57367761 A C SERPING1 Missense_Mutation p.Y154S 0.21 deleterious(0) probably_damaging(0.995) TCGA-ZS-A9CD-01 11 59345631 59345631 T A OSBP Missense_Mutation p.N684I 0.38 tolerated(0.37) possibly_damaging(0.843) TCGA-ZS-A9CD-01 11 60739363 60739363 G T CD6 Missense_Mutation p.G9V 0.36 deleterious(0) benign(0.274) TCGA-ZS-A9CD-01 11 99426911 99426911 A G CNTN5 5'UTR 0.24 TCGA-ZS-A9CD-01 12 104155082 104155082 A C STAB2 Missense_Mutation p.E2418A 0.26 tolerated(0.24) possibly_damaging(0.596) TCGA-ZS-A9CD-01 12 104378700 104378700 T A TDG Splice_Site p.X322_splice 0.27 TCGA-ZS-A9CD-01 12 120882665 120882665 A C TRIAP1 3'UTR 0.15 TCGA-ZS-A9CD-01 12 132636036 132636036 C T NOC4L Missense_Mutation p.P361S 0.25 deleterious(0) probably_damaging(1) TCGA-ZS-A9CD-01 12 20833072 20833072 G A PDE3A Missense_Mutation p.G1098D 0.27 deleterious(0.03) benign(0.009) TCGA-ZS-A9CD-01 12 41312465 41312465 G T CNTN1 Missense_Mutation p.G40V 0.21 deleterious(0) probably_damaging(1) TCGA-ZS-A9CD-01 12 53012005 53012005 C A KRT73 Missense_Mutation p.G102W 0.31 deleterious(0) probably_damaging(0.998) TCGA-ZS-A9CD-01 12 53225249 53225249 C A KRT79 Silent p.R213R 0.29 TCGA-ZS-A9CD-01 12 66345235 66345235 A T HMGA2 Intron 0.07 TCGA-ZS-A9CD-01 12 6946909 6946909 G A LEPREL2 Silent p.Q574Q 0.12 TCGA-ZS-A9CD-01 12 77444515 77444515 C A E2F7 Missense_Mutation p.V127F 0.30 deleterious(0.03) possibly_damaging(0.779) TCGA-ZS-A9CD-01 13 102235651 102235651 T C ITGBL1 Silent p.C271C 0.24 TCGA-ZS-A9CD-01 13 26594029 26594029 G T ATP8A2 Missense_Mutation p.G1158V 0.30 deleterious(0) probably_damaging(1) TCGA-ZS-A9CD-01 13 36699999 36699999 G T DCLK1 Silent p.T92T 0.30 TCGA-ZS-A9CD-01 13 41507803 41507803 G A ELF1 Missense_Mutation p.R540C 0.30 deleterious(0.03) possibly_damaging(0.582) TCGA-ZS-A9CD-01 14 106725376 106725376 G A IGHV3-23 Missense_Mutation p.A59V 0.16 deleterious_low_confidence(0.02) benign(0.316) TCGA-ZS-A9CD-01 14 20444000 20444000 A G OR4K15 Missense_Mutation p.D108G 0.31 deleterious(0) benign(0.118) TCGA-ZS-A9CD-01 14 20897109 20897109 G A KLHL33 Missense_Mutation p.P501S 0.21 deleterious(0) probably_damaging(1) TCGA-ZS-A9CD-01 14 31554030 31554030 G T AP4S1 Missense_Mutation p.C141F 0.08 deleterious_low_confidence(0.03) benign(0.102) TCGA-ZS-A9CD-01 14 38678565 38678565 T A SSTR1 5'UTR 0.24 TCGA-ZS-A9CD-01 14 69358837 69358837 G A ACTN1 Missense_Mutation p.T340M 0.12 deleterious(0) probably_damaging(0.985) TCGA-ZS-A9CD-01 14 88967666 88967666 C T PTPN21 Missense_Mutation p.E212K 0.28 tolerated(0.06) probably_damaging(0.998) TCGA-ZS-A9CD-01 15 40660759 40660759 T C DISP2 Missense_Mutation p.C816R 0.20 deleterious(0) probably_damaging(1) TCGA-ZS-A9CD-01 15 42434382 42434382 C T PLA2G4F Missense_Mutation p.E784K 0.32 deleterious(0.03) benign(0.072) TCGA-ZS-A9CD-01 15 43643187 43643187 A G ADAL Missense_Mutation p.D247G 0.14 tolerated(0.08) benign(0.012) TCGA-ZS-A9CD-01 15 45361208 45361208 C G SORD Missense_Mutation p.I248M 0.14 tolerated(0.06) benign(0.405) TCGA-ZS-A9CD-01 15 74281023 74281023 G C STOML1 Missense_Mutation p.Q171E 0.23 deleterious(0.01) benign(0.139) TCGA-ZS-A9CD-01 15 85186706 85186707 GG - WDR73 Frame_Shift_Del p.R378Lfs*11 0.26 TCGA-ZS-A9CD-01 15 89398123 89398123 G C ACAN Missense_Mutation p.E769D 0.08 tolerated(0.07) benign(0.001) TCGA-ZS-A9CD-01 16 10274102 10274102 C A GRIN2A Missense_Mutation p.G56V 0.20 tolerated(0.07) benign(0.167) TCGA-ZS-A9CD-01 16 31519395 31519395 C T C16orf58 Silent p.Q100Q 0.20 TCGA-ZS-A9CD-01 16 4310529 4310529 T A TFAP4 Missense_Mutation p.Q198L 0.07 deleterious(0.05) unknown(0) TCGA-ZS-A9CD-01 16 67281173 67281173 C A FHOD1 Silent p.G47G 0.20 TCGA-ZS-A9CD-01 16 8722963 8722963 A C METTL22 Missense_Mutation p.R170S 0.24 deleterious(0.01) benign(0.41) TCGA-ZS-A9CD-01 17 10543991 10543991 C A MYH3 Silent p.L726L 0.25 TCGA-ZS-A9CD-01 17 26970319 26970319 C A KIAA0100 Missense_Mutation p.A87S 0.29 tolerated(0.19) probably_damaging(0.917) TCGA-ZS-A9CD-01 17 34091295 34091295 T A C17orf50 Missense_Mutation p.W95R 0.24 deleterious(0) probably_damaging(0.934) TCGA-ZS-A9CD-01 17 43474146 43474146 G A ARHGAP27 Silent p.A313A 0.17 TCGA-ZS-A9CD-01 17 4500190 4500190 C T SMTNL2 Missense_Mutation p.S342L 0.07 deleterious(0) probably_damaging(0.997) TCGA-ZS-A9CD-01 17 62079994 62079994 T C C17orf72 3'Flank 0.33 TCGA-ZS-A9CD-01 17 66864219 66864219 T C ABCA8 3'UTR 0.06 TCGA-ZS-A9CD-01 17 73132208 73132208 C T HN1 Silent p.S145S 0.26 TCGA-ZS-A9CD-01 17 73201809 73201809 G T NUP85 5'UTR 0.28 TCGA-ZS-A9CD-01 18 30092964 30092964 G T WBP11P1 RNA 0.17 TCGA-ZS-A9CD-01 18 76757383 76757383 C A SALL3 3'Flank 0.30 TCGA-ZS-A9CD-01 19 1371003 1371003 G A MUM1 Missense_Mutation p.E639K 0.08 tolerated(0.06) possibly_damaging(0.801) TCGA-ZS-A9CD-01 19 1490362 1490362 C T PCSK4 5'UTR 0.31 TCGA-ZS-A9CD-01 19 21608547 21608550 AAGA G ZNF493 3'UTR 0.29 TCGA-ZS-A9CD-01 19 33892756 33892756 C A PEPD Nonsense_Mutation p.E280* 0.24 TCGA-ZS-A9CD-01 19 35521747 35521747 T C SCN1B Missense_Mutation p.V8A 0.08 deleterious_low_confidence(0.02) unknown(0) TCGA-ZS-A9CD-01 19 38610385 38610385 T A SIPA1L3 Missense_Mutation p.C911S 0.08 deleterious(0) probably_damaging(0.999) TCGA-ZS-A9CD-01 19 45790827 45790827 C T MARK4 Nonsense_Mutation p.R467* 0.23 TCGA-ZS-A9CD-01 19 53761659 53761659 G T VN1R2 Missense_Mutation p.A11S 0.22 unknown(0) TCGA-ZS-A9CD-01 19 55087301 55087301 C A LILRA2 Nonsense_Mutation p.S327* 0.25 TCGA-ZS-A9CD-01 19 55087318 55087318 A G LILRA2 Missense_Mutation p.T333A 0.24 tolerated(0.06) benign(0.2) TCGA-ZS-A9CD-01 19 5844157 5844157 C T FUT3 Missense_Mutation p.G232R 0.29 tolerated(0.36) benign(0.018) TCGA-ZS-A9CD-01 19 757270 757270 A G MISP Silent p.T108T 0.27 TCGA-ZS-A9CD-01 19 9646941 9646941 T A ZNF426 5'UTR 0.25 TCGA-ZS-A9CD-01 1 110766436 110766436 C T KCNC4 Missense_Mutation p.S510F 0.27 deleterious(0.02) probably_damaging(0.957) TCGA-ZS-A9CD-01 1 120436590 120436591 - T ADAM30 Frame_Shift_Ins p.*791Vfs*10 0.22 TCGA-ZS-A9CD-01 1 152275037 152275037 A G FLG 3'UTR 0.24 TCGA-ZS-A9CD-01 1 152734035 152734035 C T KPRP 3'UTR 0.09 TCGA-ZS-A9CD-01 1 153043050 153043050 A C SPRR2B 3'UTR 0.08 TCGA-ZS-A9CD-01 1 167095804 167095804 C T DUSP27 Missense_Mutation p.A479V 0.41 tolerated(0.31) benign(0) TCGA-ZS-A9CD-01 1 183520230 183520230 A C SMG7 Missense_Mutation p.S1073R 0.05 deleterious_low_confidence(0) benign(0.355) TCGA-ZS-A9CD-01 1 183520238 183520238 G A SMG7 Nonsense_Mutation p.W1075* 0.04 TCGA-ZS-A9CD-01 1 214816125 214816125 C T CENPF Missense_Mutation p.P1482S 0.37 benign(0.036) TCGA-ZS-A9CD-01 1 225373092 225373092 T C DNAH14 Missense_Mutation p.F951L 0.22 tolerated(0.98) benign(0.001) TCGA-ZS-A9CD-01 1 27106649 27106649 G A ARID1A Missense_Mutation p.G2087E 0.28 probably_damaging(0.997) TCGA-ZS-A9CD-01 1 3388265 3388265 G T ARHGEF16 Intron 0.17 TCGA-ZS-A9CD-01 1 34204787 34204787 C T CSMD2 Silent p.L734L 0.25 TCGA-ZS-A9CD-01 20 62198638 62198638 C T HELZ2 Silent p.V691V 0.04 TCGA-ZS-A9CD-01 21 47695145 47695145 G A MCM3AP Silent p.T651T 0.30 TCGA-ZS-A9CD-01 21 47737220 47737220 C A C21orf58 Intron 0.42 TCGA-ZS-A9CD-01 22 16267031 16267031 C T POTEH Missense_Mutation p.G473D 0.07 tolerated_low_confidence(0.24) benign(0.015) TCGA-ZS-A9CD-01 2 100058822 100058822 G A REV1 Silent p.L154L 0.30 TCGA-ZS-A9CD-01 2 101009642 101009642 G A CHST10 3'UTR 0.30 TCGA-ZS-A9CD-01 2 160181399 160181399 T C BAZ2B Silent p.K2092K 0.04 TCGA-ZS-A9CD-01 2 170002368 170002368 C G LRP2 Missense_Mutation p.E4293Q 0.20 possibly_damaging(0.725) TCGA-ZS-A9CD-01 2 20137511 20137511 C T WDR35 Missense_Mutation p.D765N 0.24 deleterious(0) probably_damaging(0.995) TCGA-ZS-A9CD-01 2 207639082 207639082 A C FASTKD2 Missense_Mutation p.Y463S 0.25 deleterious(0) probably_damaging(1) TCGA-ZS-A9CD-01 2 21236228 21236228 A - APOB Frame_Shift_Del p.F1340Lfs*17 0.14 TCGA-ZS-A9CD-01 2 225750511 225750511 C T DOCK10 Silent p.K208K 0.29 TCGA-ZS-A9CD-01 2 233114009 233114009 G A DIS3L2 Missense_Mutation p.D460N 0.07 deleterious(0.03) probably_damaging(0.998) TCGA-ZS-A9CD-01 2 47184111 47184111 A G TTC7A Missense_Mutation p.Q161R 0.20 tolerated(1) benign(0.001) TCGA-ZS-A9CD-01 2 99013428 99013428 G A CNGA3 Missense_Mutation p.E599K 0.31 deleterious(0.01) benign(0.418) TCGA-ZS-A9CD-01 3 124160836 124160836 C T KALRN Silent p.Y1079Y 0.23 TCGA-ZS-A9CD-01 3 124210191 124210191 G A KALRN Missense_Mutation p.E1535K 0.28 deleterious(0) benign(0.412) TCGA-ZS-A9CD-01 3 132086778 132086778 C T ACPP 3'UTR 0.54 TCGA-ZS-A9CD-01 3 142775377 142775377 C T U2SURP 3'UTR 0.23 TCGA-ZS-A9CD-01 3 14860691 14860691 G T FGD5 Missense_Mutation p.R38L 0.32 deleterious_low_confidence(0) benign(0.199) TCGA-ZS-A9CD-01 3 15686574 15686574 C A BTD Missense_Mutation p.T404N 0.22 tolerated(0.14) probably_damaging(0.994) TCGA-ZS-A9CD-01 3 15686579 15686579 G T BTD Missense_Mutation p.V406F 0.21 deleterious(0.01) probably_damaging(0.924) TCGA-ZS-A9CD-01 3 183898987 183899008 AAGGCACAGCTGATGAAACAAG - AP2M1 Frame_Shift_Del p.K227Tfs*42 0.16 TCGA-ZS-A9CD-01 3 195615340 195615340 G A TNK2 Silent p.Y103Y 0.22 TCGA-ZS-A9CD-01 3 33883512 33883512 G A PDCD6IP Silent p.Q440Q 0.27 TCGA-ZS-A9CD-01 3 37670698 37670698 C T ITGA9 Silent p.I570I 0.22 TCGA-ZS-A9CD-01 3 46925049 46925049 G C PTH1R 5'UTR 0.28 TCGA-ZS-A9CD-01 3 51671348 51671348 G A RAD54L2 Missense_Mutation p.C504Y 0.20 deleterious(0) probably_damaging(1) TCGA-ZS-A9CD-01 3 77612353 77612353 A G ROBO2 Missense_Mutation p.S535G 0.24 tolerated(0.26) benign(0) TCGA-ZS-A9CD-01 3 89480491 89480491 A G EPHA3 Silent p.E776E 0.11 TCGA-ZS-A9CD-01 4 265506 265506 A C ZNF732 Missense_Mutation p.H380Q 0.09 deleterious(0) probably_damaging(0.971) TCGA-ZS-A9CD-01 4 30724272 30724272 G A PCDH7 Missense_Mutation p.D410N 0.28 deleterious(0.01) probably_damaging(1) TCGA-ZS-A9CD-01 4 3208260 3208260 T G HTT Missense_Mutation p.L1919R 0.33 probably_damaging(0.993) TCGA-ZS-A9CD-01 4 41946817 41946817 G C TMEM33 Missense_Mutation p.G135A 0.28 deleterious(0) possibly_damaging(0.603) TCGA-ZS-A9CD-01 4 71067172 71067172 T C ODAM Missense_Mutation p.I177T 0.25 deleterious(0.03) benign(0.027) TCGA-ZS-A9CD-01 4 74276080 74276096 AAGTGTGCCAGTCTCCA - ALB Frame_Shift_Del p.C224Ifs*22 0.14 TCGA-ZS-A9CD-01 4 77303825 77303825 A G CCDC158 Silent p.T284T 0.31 TCGA-ZS-A9CD-01 5 100221992 100221992 C A ST8SIA4 Intron 0.16 TCGA-ZS-A9CD-01 5 149389802 149389802 A G HMGXB3 Silent p.L147L 0.25 TCGA-ZS-A9CD-01 5 160757935 160757935 C A GABRB2 Missense_Mutation p.K344N 0.31 tolerated(0.06) benign(0.061) TCGA-ZS-A9CD-01 5 172752987 172752987 C T STC2 Missense_Mutation p.A60T 0.20 deleterious(0) possibly_damaging(0.527) TCGA-ZS-A9CD-01 5 175798911 175798911 C T ARL10 3'UTR 0.13 TCGA-ZS-A9CD-01 6 106740950 106740950 G A ATG5 Missense_Mutation p.L90F 0.06 tolerated(0.66) benign(0.006) TCGA-ZS-A9CD-01 6 106740951 106740951 A T ATG5 Silent p.L89L 0.06 TCGA-ZS-A9CD-01 6 159653741 159653741 C T FNDC1 Nonsense_Mutation p.Q733* 0.15 TCGA-ZS-A9CD-01 6 37250093 37250093 G T TBC1D22B Missense_Mutation p.R185L 0.31 deleterious(0) possibly_damaging(0.786) TCGA-ZS-A9CD-01 6 42162593 42162593 G C GUCA1B 5'UTR 0.33 TCGA-ZS-A9CD-01 6 93969086 93969086 C G EPHA7 Missense_Mutation p.R637P 0.39 deleterious(0) probably_damaging(0.983) TCGA-ZS-A9CD-01 6 96651187 96651187 C T FUT9 Silent p.N52N 0.06 TCGA-ZS-A9CD-01 6 96652040 96652040 G C FUT9 Missense_Mutation p.A337P 0.09 deleterious(0.02) probably_damaging(0.995) TCGA-ZS-A9CD-01 7 100281944 100281944 T C GIGYF1 Missense_Mutation p.E549G 0.40 deleterious(0.04) unknown(0) TCGA-ZS-A9CD-01 7 31378068 31378068 G A NEUROD6 Missense_Mutation p.S272F 0.36 deleterious(0) probably_damaging(0.951) TCGA-ZS-A9CD-01 7 74470082 74470082 C A WBSCR16 Missense_Mutation p.G386V 0.17 deleterious(0) probably_damaging(0.927) TCGA-ZS-A9CD-01 8 36664901 36664901 T C KCNU1 Missense_Mutation p.F197L 0.38 deleterious(0) probably_damaging(1) TCGA-ZS-A9CD-01 8 85833374 85833374 C T RALYL 3'UTR 0.64 TCGA-ZS-A9CD-01 9 111881763 111881763 C T TMEM245 Missense_Mutation p.R144H 0.35 deleterious(0.01) benign(0.157) TCGA-ZS-A9CD-01 9 129599592 129599592 G A ZBTB43 3'UTR 0.21 TCGA-ZS-A9CD-01 9 72131800 72131800 C G APBA1 Silent p.A109A 0.45 TCGA-ZS-A9CD-01 9 90388043 90388043 T C CTSL3P RNA 0.22 TCGA-ZS-A9CD-01 X 119562228 119562228 G T LAMP2 3'UTR 0.06 TCGA-ZS-A9CD-01 X 153042690 153042690 A G PLXNB3 Missense_Mutation p.E1675G 0.15 deleterious(0.01) possibly_damaging(0.462) TCGA-ZS-A9CD-01 X 155004358 155004358 T G SPRY3 Silent p.S275S 0.22 TCGA-ZS-A9CD-01 X 35969436 35969436 G C CXorf22 Missense_Mutation p.W282S 0.55 deleterious(0) probably_damaging(1) TCGA-ZS-A9CE-01 10 104174854 104174854 C T PSD Missense_Mutation p.R297H 0.10 tolerated(0.11) benign(0.019) TCGA-ZS-A9CE-01 10 106153114 106153120 TTAAAGA - CCDC147 Frame_Shift_Del p.K520* 0.18 TCGA-ZS-A9CE-01 10 112641197 112641197 G T PDCD4 Missense_Mutation p.A84S 0.42 tolerated(0.6) benign(0) TCGA-ZS-A9CE-01 10 126523308 126523319 CTTCCAATTATG - FAM175B In_Frame_Del p.N341_S344del 0.28 TCGA-ZS-A9CE-01 10 133963002 133963002 C T JAKMIP3 Silent p.A645A 0.25 TCGA-ZS-A9CE-01 10 70706321 70706321 G T DDX50 Missense_Mutation p.G717C 0.25 deleterious_low_confidence(0.01) unknown(0) TCGA-ZS-A9CE-01 10 75010634 75010634 T C MRPS16 Silent p.T130T 0.43 TCGA-ZS-A9CE-01 10 860959 860959 C T LARP4B Missense_Mutation p.E583K 0.16 deleterious(0.02) possibly_damaging(0.589) TCGA-ZS-A9CE-01 11 102745584 102745585 - T MMP12 RNA 0.24 TCGA-ZS-A9CE-01 11 320637 320637 G - IFITM3 Frame_Shift_Del p.W60Gfs*9 0.20 TCGA-ZS-A9CE-01 11 33682552 33682552 G A KIAA1549L Missense_Mutation p.A1754T 0.20 deleterious(0.03) probably_damaging(0.972) TCGA-ZS-A9CE-01 11 33731520 33731520 G C CD59 3'UTR 0.29 TCGA-ZS-A9CE-01 12 21918723 21918740 AGAATTGTTCCTTCGGAT - KCNJ8 In_Frame_Del p.I398_S403del 0.18 TCGA-ZS-A9CE-01 12 52885513 52885513 A G KRT6A Missense_Mutation p.F183S 0.18 deleterious(0) probably_damaging(0.973) TCGA-ZS-A9CE-01 12 55794617 55794617 T C OR6C65 Missense_Mutation p.L102S 0.45 tolerated_low_confidence(0.07) benign(0.006) TCGA-ZS-A9CE-01 12 6230347 6230347 C T VWF Silent p.S71S 0.38 TCGA-ZS-A9CE-01 12 95867968 95867968 G A METAP2 Missense_Mutation p.E5K 0.41 deleterious_low_confidence(0.03) benign(0.016) TCGA-ZS-A9CE-01 13 114322307 114322307 G A GRK1 Silent p.G202G 0.27 TCGA-ZS-A9CE-01 13 44717962 44717962 T G SMIM2 3'UTR 0.73 TCGA-ZS-A9CE-01 14 100604259 100604259 G A EVL Intron 0.18 TCGA-ZS-A9CE-01 14 105413228 105413228 C G AHNAK2 Missense_Mutation p.G2854R 0.17 possibly_damaging(0.79) TCGA-ZS-A9CE-01 14 45475303 45475303 G T FAM179B Missense_Mutation p.V913F 0.18 deleterious(0.01) benign(0.044) TCGA-ZS-A9CE-01 14 45475307 45475307 C T FAM179B Missense_Mutation p.P914L 0.18 deleterious(0.03) probably_damaging(0.996) TCGA-ZS-A9CE-01 14 73407010 73407010 G T DCAF4 Silent p.T92T 0.45 TCGA-ZS-A9CE-01 14 74180325 74180325 C T PNMA1 Silent p.L6L 0.40 TCGA-ZS-A9CE-01 14 94084535 94084535 C T UNC79 Intron 0.13 TCGA-ZS-A9CE-01 14 94423364 94423364 G T ASB2 Intron 0.47 TCGA-ZS-A9CE-01 15 54025359 54025359 C T WDR72 Splice_Site 0.27 TCGA-ZS-A9CE-01 15 62948248 62948248 C T TLN2 Missense_Mutation p.S208L 0.39 deleterious(0.03) possibly_damaging(0.692) TCGA-ZS-A9CE-01 15 64048942 64048942 T G HERC1 Missense_Mutation p.E409D 0.38 probably_damaging(0.995) TCGA-ZS-A9CE-01 15 91448887 91448887 G T MAN2A2 Missense_Mutation p.D157Y 0.20 deleterious(0.01) possibly_damaging(0.524) TCGA-ZS-A9CE-01 16 19729525 19729525 G C IQCK 5'UTR 0.19 TCGA-ZS-A9CE-01 16 30100136 30100136 A C TBX6 Missense_Mutation p.Y216D 0.39 deleterious(0) probably_damaging(1) TCGA-ZS-A9CE-01 16 47699867 47699867 G A PHKB Intron 0.12 TCGA-ZS-A9CE-01 16 55522498 55522498 G T MMP2 Missense_Mutation p.K292N 0.43 tolerated(0.19) probably_damaging(0.996) TCGA-ZS-A9CE-01 16 613785 613785 C T C16orf11 Missense_Mutation p.P164L 0.24 tolerated(1) benign(0.003) TCGA-ZS-A9CE-01 16 618039 618039 C T NHLRC4 5'UTR 0.43 TCGA-ZS-A9CE-01 16 67985897 67985897 C A SLC12A4 Missense_Mutation p.D323Y 0.40 deleterious(0) possibly_damaging(0.785) TCGA-ZS-A9CE-01 16 69143870 69143870 G A HAS3 Missense_Mutation p.G191E 0.42 deleterious(0) probably_damaging(0.952) TCGA-ZS-A9CE-01 17 29187555 29187555 G T ATAD5 Nonsense_Mutation p.E1021* 0.39 TCGA-ZS-A9CE-01 17 39296258 39296258 C T KRTAP4-6 Missense_Mutation p.R161H 0.09 deleterious(0.03) unknown(0) TCGA-ZS-A9CE-01 17 40824222 40824223 - G PLEKHH3 Frame_Shift_Ins p.G320Rfs*154 0.27 TCGA-ZS-A9CE-01 17 53398333 53398333 A G HLF 3'UTR 0.46 TCGA-ZS-A9CE-01 17 55027539 55027539 G A COIL Missense_Mutation p.P355L 0.28 tolerated(0.09) benign(0.125) TCGA-ZS-A9CE-01 17 62238222 62238222 T C TEX2 Missense_Mutation p.T922A 0.36 tolerated(0.29) benign(0.07) TCGA-ZS-A9CE-01 17 65103749 65103749 C A HELZ Nonsense_Mutation p.E1593* 0.45 TCGA-ZS-A9CE-01 17 67148533 67148533 C T ABCA10 Missense_Mutation p.R1409H 0.54 deleterious(0) possibly_damaging(0.849) TCGA-ZS-A9CE-01 17 74721921 74721921 G A JMJD6 Missense_Mutation p.A49V 0.06 tolerated(0.73) benign(0.001) TCGA-ZS-A9CE-01 17 76087679 76087679 A G TNRC6C Missense_Mutation p.S1318G 0.35 tolerated(0.21) benign(0) TCGA-ZS-A9CE-01 18 2891712 2891712 G A EMILIN2 Silent p.G529G 0.27 TCGA-ZS-A9CE-01 18 34326998 34326998 G T FHOD3 Nonsense_Mutation p.E1203* 0.20 TCGA-ZS-A9CE-01 18 61305147 61305147 T A SERPINB4 Nonsense_Mutation p.K327* 0.51 TCGA-ZS-A9CE-01 18 9258165 9258165 G C ANKRD12 Missense_Mutation p.E1634Q 0.49 tolerated_low_confidence(0.07) benign(0.323) TCGA-ZS-A9CE-01 19 1490287 1490287 C T PCSK4 Missense_Mutation p.R20H 0.45 tolerated(0.6) benign(0.019) TCGA-ZS-A9CE-01 19 19607000 19607000 A G GATAD2A Missense_Mutation p.N299S 0.31 tolerated(0.29) benign(0.008) TCGA-ZS-A9CE-01 19 22941385 22941385 T A ZNF99 Missense_Mutation p.K442N 0.43 tolerated(0.47) possibly_damaging(0.772) TCGA-ZS-A9CE-01 19 23545201 23545201 G A ZNF91 Missense_Mutation p.R194C 0.05 tolerated(0.19) benign(0.155) TCGA-ZS-A9CE-01 19 51301638 51301638 G - C19orf48 Frame_Shift_Del p.P23Qfs*22 0.19 TCGA-ZS-A9CE-01 19 54822565 54822565 A T LILRA5 Intron 0.43 TCGA-ZS-A9CE-01 19 54822761 54822761 A T LILRA5 Missense_Mutation p.L212H 0.47 deleterious(0) probably_damaging(0.965) TCGA-ZS-A9CE-01 19 9072804 9072804 T G MUC16 Missense_Mutation p.K4881T 0.11 unknown(0) TCGA-ZS-A9CE-01 1 145298329 145298329 T A NBPF10 Silent p.S247S 0.11 TCGA-ZS-A9CE-01 1 145747212 145747212 A G PDZK1 Missense_Mutation p.R57G 0.39 deleterious(0) probably_damaging(0.909) TCGA-ZS-A9CE-01 1 152192560 152192560 G T HRNR Silent p.S515S 0.43 TCGA-ZS-A9CE-01 1 152192561 152192561 G T HRNR Missense_Mutation p.S515Y 0.44 unknown(0) TCGA-ZS-A9CE-01 1 152327802 152327802 A T FLG2 Missense_Mutation p.F820L 0.50 unknown(0) TCGA-ZS-A9CE-01 1 155290828 155290828 C A RUSC1 Intron 0.31 TCGA-ZS-A9CE-01 1 155720493 155720493 A C GON4L Missense_Mutation p.L2202R 0.17 deleterious(0) possibly_damaging(0.883) TCGA-ZS-A9CE-01 1 159683527 159683527 G A CRP Nonsense_Mutation p.Q155* 0.30 TCGA-ZS-A9CE-01 1 161332494 161332494 T G SDHC 3'UTR 0.29 TCGA-ZS-A9CE-01 1 170705233 170705233 C T PRRX1 Missense_Mutation p.A215V 0.16 tolerated(0.13) benign(0.001) TCGA-ZS-A9CE-01 1 201958548 201958548 C A RNPEP Missense_Mutation p.T209N 0.18 tolerated(0.23) benign(0.02) TCGA-ZS-A9CE-01 1 203144856 203144856 G A MYBPH Missense_Mutation p.P10S 0.12 tolerated_low_confidence(0.22) benign(0.006) TCGA-ZS-A9CE-01 1 206669603 206669603 C T IKBKE 3'UTR 0.06 TCGA-ZS-A9CE-01 1 207196069 207196069 C T C1orf116 Missense_Mutation p.R347H 0.27 deleterious(0) probably_damaging(1) TCGA-ZS-A9CE-01 1 23696970 23696970 G A C1orf213 3'UTR 0.49 TCGA-ZS-A9CE-01 1 23720511 23720511 A C TCEA3 Missense_Mutation p.L227R 0.39 deleterious(0) possibly_damaging(0.774) TCGA-ZS-A9CE-01 1 238050802 238050802 A G ZP4 Missense_Mutation p.S205P 0.14 tolerated(0.29) benign(0.03) TCGA-ZS-A9CE-01 1 241094018 241094018 A T RGS7 Nonsense_Mutation p.Y128* 0.29 TCGA-ZS-A9CE-01 1 247267552 247267552 G A ZNF669 5'UTR 0.04 TCGA-ZS-A9CE-01 1 248224067 248224067 C T OR2L3 Silent p.I28I 0.30 TCGA-ZS-A9CE-01 1 248616329 248616329 C T OR2T2 Silent p.I77I 0.07 TCGA-ZS-A9CE-01 1 36306921 36306921 G T AGO4 Missense_Mutation p.R627L 0.20 deleterious(0.03) benign(0.378) TCGA-ZS-A9CE-01 1 63867986 63867986 G C ALG6 Missense_Mutation p.A77P 0.15 deleterious(0) probably_damaging(1) TCGA-ZS-A9CE-01 1 78422295 78422295 G - FUBP1 Frame_Shift_Del p.P556Lfs*109 0.28 TCGA-ZS-A9CE-01 1 78429310 78429310 C A FUBP1 Nonsense_Mutation p.E378* 0.40 TCGA-ZS-A9CE-01 1 85491786 85491786 G - MCOLN3 Intron 0.26 TCGA-ZS-A9CE-01 1 89449349 89449349 A G RBMXL1 Missense_Mutation p.V54A 0.33 deleterious(0) possibly_damaging(0.734) TCGA-ZS-A9CE-01 1 95360387 95360387 G A SLC44A3 Missense_Mutation p.R624K 0.18 tolerated(0.44) benign(0.002) TCGA-ZS-A9CE-01 20 23017238 23017238 C A SSTR4 Missense_Mutation p.P373Q 0.18 tolerated(0.08) benign(0.143) TCGA-ZS-A9CE-01 21 45078038 45078038 C T HSF2BP 5'UTR 0.49 TCGA-ZS-A9CE-01 22 19511781 19511781 C T CLDN5 Missense_Mutation p.A85T 0.04 deleterious_low_confidence(0.01) benign(0.003) TCGA-ZS-A9CE-01 22 20970714 20970714 G A SMPD4P1 RNA 0.28 TCGA-ZS-A9CE-01 22 30803523 30803523 G A SEC14L2 Silent p.Q118Q 0.36 TCGA-ZS-A9CE-01 22 32627060 32627060 T C SLC5A4 Missense_Mutation p.M342V 0.16 tolerated(0.22) benign(0.016) TCGA-ZS-A9CE-01 22 42266958 42266958 C T SREBF2 Silent p.G262G 0.38 TCGA-ZS-A9CE-01 2 11735450 11735450 G A GREB1 Silent p.E590E 0.04 TCGA-ZS-A9CE-01 2 148684705 148684706 - AGGTTA ACVR2A In_Frame_Ins p.R469_L470dup 0.61 TCGA-ZS-A9CE-01 2 15427254 15427254 C T NBAS Missense_Mutation p.S1694N 0.50 tolerated(0.45) benign(0.003) TCGA-ZS-A9CE-01 2 179422457 179422457 G T TTN Nonsense_Mutation p.Y29208* 0.72 TCGA-ZS-A9CE-01 2 220404323 220404359 TCTCCAGCAGCTCCTCTTCTTGTTCTGAGGCTGCCGC GCCT CHPF In_Frame_Del p.A692_S704delinsRR 0.17 TCGA-ZS-A9CE-01 2 222321452 222321452 G T EPHA4 Missense_Mutation p.A495D 0.38 tolerated(0.16) benign(0.165) TCGA-ZS-A9CE-01 2 242007187 242007187 C T SNED1 Missense_Mutation p.P1007S 0.21 deleterious(0.03) probably_damaging(0.973) TCGA-ZS-A9CE-01 2 28761188 28761188 T C PLB1 Silent p.N186N 0.37 TCGA-ZS-A9CE-01 2 43927267 43927267 T C PLEKHH2 Silent p.F390F 0.43 TCGA-ZS-A9CE-01 2 68622843 68622843 G A PLEK Silent p.E316E 0.21 TCGA-ZS-A9CE-01 2 71190004 71190004 A C ATP6V1B1 Missense_Mutation p.S295R 0.46 deleterious(0) probably_damaging(0.978) TCGA-ZS-A9CE-01 3 107492029 107492029 A T BBX Silent p.I487I 0.23 TCGA-ZS-A9CE-01 3 108133217 108133217 C T MYH15 Missense_Mutation p.R1356Q 0.44 deleterious(0.03) benign(0.018) TCGA-ZS-A9CE-01 3 148884845 148884845 G C HPS3 Missense_Mutation p.D872H 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-ZS-A9CE-01 3 156170702 156170702 T C KCNAB1 Missense_Mutation p.F112L 0.57 tolerated(0.09) probably_damaging(0.986) TCGA-ZS-A9CE-01 3 169099207 169099207 G T MECOM Missense_Mutation p.S72Y 0.51 deleterious(0) probably_damaging(1) TCGA-ZS-A9CE-01 3 169802764 169802764 T C GPR160 Missense_Mutation p.I335T 0.29 deleterious(0) benign(0.322) TCGA-ZS-A9CE-01 3 178936092 178936092 A C PIK3CA Missense_Mutation p.E545A 0.49 deleterious(0.02) probably_damaging(0.965) TCGA-ZS-A9CE-01 3 27418169 27418169 A G SLC4A7 3'UTR 0.14 TCGA-ZS-A9CE-01 3 4735250 4735250 G A ITPR1 Missense_Mutation p.R1354Q 0.60 tolerated(0.52) benign(0.015) TCGA-ZS-A9CE-01 3 52966136 52966137 - G SFMBT1 Frame_Shift_Ins p.F215Ifs*14 0.32 TCGA-ZS-A9CE-01 4 106162812 106162812 G A TET2 Intron 0.53 TCGA-ZS-A9CE-01 4 13589344 13589344 G A BOD1L1 Missense_Mutation p.L2778F 0.27 benign(0.248) TCGA-ZS-A9CE-01 4 153245454 153245454 C T FBXW7 Silent p.G579G 0.18 TCGA-ZS-A9CE-01 4 15733514 15733514 C T BST1 3'UTR 0.52 TCGA-ZS-A9CE-01 4 38691609 38691609 G A KLF3 Intron 0.25 TCGA-ZS-A9CE-01 4 91701657 91701657 C A CCSER1 Intron 0.26 TCGA-ZS-A9CE-01 5 102326066 102326066 T C PAM Missense_Mutation p.L525P 0.48 deleterious(0) probably_damaging(0.998) TCGA-ZS-A9CE-01 5 121187669 121187669 G A FTMT Missense_Mutation p.C4Y 0.42 tolerated_low_confidence(0.14) benign(0.001) TCGA-ZS-A9CE-01 5 13701461 13701461 C T DNAH5 Missense_Mutation p.G4475S 0.28 probably_damaging(0.959) TCGA-ZS-A9CE-01 5 140604578 140604578 G A PCDHB14 Missense_Mutation p.A501T 0.32 tolerated_low_confidence(0.11) benign(0.021) TCGA-ZS-A9CE-01 5 140604579 140604579 C A PCDHB14 Missense_Mutation p.A501D 0.33 tolerated_low_confidence(0.07) benign(0.049) TCGA-ZS-A9CE-01 5 140769171 140769171 G A PCDHGB4 Missense_Mutation p.D574N 0.30 deleterious(0) possibly_damaging(0.576) TCGA-ZS-A9CE-01 5 158750101 158750101 C T IL12B Missense_Mutation p.D109N 0.35 tolerated(0.82) benign(0.001) TCGA-ZS-A9CE-01 5 158750231 158750231 G C IL12B Missense_Mutation p.S65R 0.26 tolerated(0.21) benign(0.009) TCGA-ZS-A9CE-01 5 176732966 176732966 G C PRELID1 Missense_Mutation p.G138A 0.30 deleterious(0) possibly_damaging(0.865) TCGA-ZS-A9CE-01 5 31799220 31799220 A G PDZD2 5'UTR 0.18 TCGA-ZS-A9CE-01 5 33937613 33937613 G - RXFP3 Frame_Shift_Del p.G257Afs*52 0.27 TCGA-ZS-A9CE-01 5 3601163 3601163 C T IRX1 3'UTR 0.34 TCGA-ZS-A9CE-01 5 90074291 90074291 G A GPR98 Silent p.Q4238Q 0.52 TCGA-ZS-A9CE-01 6 152560752 152560752 C G SYNE1 Missense_Mutation p.Q6661H 0.51 benign(0.289) TCGA-ZS-A9CE-01 6 160819023 160819023 T A SLC22A3 Missense_Mutation p.C148S 0.26 deleterious(0) probably_damaging(0.997) TCGA-ZS-A9CE-01 6 31927840 31927840 G A SKIV2L Silent p.Q60Q 0.38 TCGA-ZS-A9CE-01 6 35196493 35196493 C T SCUBE3 Missense_Mutation p.A104V 0.16 deleterious(0.05) probably_damaging(0.986) TCGA-ZS-A9CE-01 6 49802972 49802972 C T CRISP1 3'UTR 0.42 TCGA-ZS-A9CE-01 6 52270444 52270444 G T PAQR8 3'UTR 0.43 TCGA-ZS-A9CE-01 6 70856559 70856559 T G COL19A1 Missense_Mutation p.D593E 0.38 tolerated(0.56) possibly_damaging(0.892) TCGA-ZS-A9CE-01 7 100247666 100247666 G C ACTL6B Silent p.L154L 0.66 TCGA-ZS-A9CE-01 7 117431601 117431601 G T CTTNBP2 Missense_Mutation p.P550Q 0.66 deleterious(0) probably_damaging(1) TCGA-ZS-A9CE-01 7 117431602 117431602 G C CTTNBP2 Missense_Mutation p.P550A 0.67 deleterious(0) probably_damaging(0.999) TCGA-ZS-A9CE-01 7 134819954 134819954 C A AGBL3 Missense_Mutation p.Q902K 0.10 tolerated_low_confidence(0.31) benign(0.003) TCGA-ZS-A9CE-01 7 2771054 2771054 C G GNA12 Missense_Mutation p.E303Q 0.04 tolerated(0.07) benign(0.143) TCGA-ZS-A9CE-01 7 2771229 2771229 C G GNA12 Silent p.G244G 0.05 TCGA-ZS-A9CE-01 7 70255042 70255042 C T AUTS2 Missense_Mutation p.P947L 0.63 tolerated(0.14) possibly_damaging(0.619) TCGA-ZS-A9CE-01 7 72717375 72717375 C T NSUN5 3'UTR 0.17 TCGA-ZS-A9CE-01 7 81372775 81372775 C A HGF Missense_Mutation p.K253N 0.05 deleterious(0.03) possibly_damaging(0.465) TCGA-ZS-A9CE-01 7 99091247 99091247 C T ZNF394 Missense_Mutation p.G531R 0.33 deleterious(0) probably_damaging(0.999) TCGA-ZS-A9CE-01 8 110420351 110420351 A G PKHD1L1 Silent p.K629K 0.18 TCGA-ZS-A9CE-01 8 55534746 55534746 C T RP1 Missense_Mutation p.P229S 0.43 deleterious(0) benign(0.403) TCGA-ZS-A9CE-01 8 57906212 57906212 C A IMPAD1 5'UTR 0.06 TCGA-ZS-A9CE-01 8 75233276 75233276 G - JPH1 Frame_Shift_Del p.R83Gfs*72 0.24 TCGA-ZS-A9CE-01 8 75274160 75274160 G A GDAP1 Missense_Mutation p.E176K 0.20 deleterious(0.04) benign(0.007) TCGA-ZS-A9CE-01 9 104303224 104303224 G T RNF20 Missense_Mutation p.V199L 0.37 tolerated(0.29) benign(0) TCGA-ZS-A9CE-01 9 127563314 127563314 C T OLFML2A Intron 0.11 TCGA-ZS-A9CE-01 9 130965733 130965734 - G DNM1 5'UTR 0.22 TCGA-ZS-A9CE-01 9 131329101 131329101 C T SPTAN1 Missense_Mutation p.R28C 0.43 deleterious(0.01) probably_damaging(0.932) TCGA-ZS-A9CE-01 9 136343498 136343498 C T SLC2A6 Missense_Mutation p.A45T 0.45 deleterious(0) probably_damaging(1) TCGA-ZS-A9CE-01 9 32552465 32552465 G A TOPORS 5'UTR 0.43 TCGA-ZS-A9CE-01 X 114524334 114524334 G A LUZP4 Silent p.S3S 0.40 TCGA-ZS-A9CE-01 X 117895239 117895239 A G IL13RA1 Missense_Mutation p.H272R 0.24 tolerated(0.52) benign(0.001) TCGA-ZS-A9CE-01 X 117959257 117959257 C A ZCCHC12 Missense_Mutation p.P17H 0.38 tolerated(0.06) benign(0.072) TCGA-ZS-A9CE-01 X 152482654 152482654 G A MAGEA1 Silent p.A119A 0.42 TCGA-ZS-A9CE-01 X 27840478 27840478 A T MAGEB10 3'UTR 0.23 TCGA-ZS-A9CE-01 X 41022048 41022048 G T USP9X Nonsense_Mutation p.E635* 0.46 TCGA-ZS-A9CE-01 X 41394032 41394032 A G CASK Silent p.H743H 0.48 TCGA-ZS-A9CE-01 X 53115089 53115089 T A TSPYL2 Silent p.T505T 0.23 TCGA-ZS-A9CE-01 X 54955093 54955093 G A TRO Missense_Mutation p.E646K 0.46 tolerated(0.05) unknown(0) TCGA-ZS-A9CE-01 X 57618959 57618959 G T ZXDB Missense_Mutation p.G160C 0.40 deleterious(0) possibly_damaging(0.775) TCGA-ZS-A9CE-01 X 57618960 57618960 G T ZXDB Missense_Mutation p.G160V 0.38 deleterious(0.04) benign(0.255) TCGA-ZS-A9CE-01 X 5810690 5810690 G A NLGN4X 3'UTR 0.62 TCGA-ZS-A9CE-01 X 71351073 71351073 G A RGAG4 Silent p.N106N 0.41 TCGA-ZS-A9CE-01 X 83723670 83723670 A G HDX Missense_Mutation p.M354T 0.10 tolerated(0.29) benign(0.067) TCGA-ZS-A9CF-01 10 102584454 102584454 C A PAX2 Silent p.P346P 0.32 TCGA-ZS-A9CF-01 10 127431661 127431661 A C EDRF1 Missense_Mutation p.L802F 0.04 tolerated(0.06) probably_damaging(0.942) TCGA-ZS-A9CF-01 10 48416487 48416487 G A GDF2 Silent p.S69S 0.50 TCGA-ZS-A9CF-01 10 89544307 89544307 C A ATAD1 Missense_Mutation p.G168V 0.42 deleterious(0) probably_damaging(1) TCGA-ZS-A9CF-01 11 1862321 1862321 C T TNNI2 Missense_Mutation p.R113W 0.46 deleterious(0) probably_damaging(0.997) TCGA-ZS-A9CF-01 11 30033969 30033969 C T KCNA4 Missense_Mutation p.R86K 0.40 tolerated_low_confidence(0.66) benign(0.067) TCGA-ZS-A9CF-01 11 34527248 34527248 A G ELF5 Missense_Mutation p.C27R 0.41 deleterious(0.04) benign(0.033) TCGA-ZS-A9CF-01 11 55872886 55872886 A T OR8H2 Missense_Mutation p.Y123F 0.44 deleterious(0.02) probably_damaging(0.91) TCGA-ZS-A9CF-01 11 58390177 58390177 A G CNTF 5'UTR 0.43 TCGA-ZS-A9CF-01 11 75146504 75146504 G A GDPD5 3'UTR 0.11 TCGA-ZS-A9CF-01 11 94308255 94308255 G C PIWIL4 Missense_Mutation p.C86S 0.41 tolerated(0.33) benign(0.001) TCGA-ZS-A9CF-01 12 102045035 102045035 C T MYBPC1 Silent p.L439L 0.40 TCGA-ZS-A9CF-01 12 132588665 132588665 T G EP400NL Missense_Mutation p.S34A 0.48 tolerated_low_confidence(1) benign(0.003) TCGA-ZS-A9CF-01 12 133195409 133195409 G A P2RX2 Missense_Mutation p.A3T 0.59 deleterious_low_confidence(0.01) benign(0.422) TCGA-ZS-A9CF-01 12 52886654 52886654 C T KRT6A Missense_Mutation p.G107S 0.46 tolerated(0.2) unknown(0) TCGA-ZS-A9CF-01 12 57865281 57865281 G A GLI1 Missense_Mutation p.A920T 0.29 tolerated_low_confidence(0.67) benign(0.001) TCGA-ZS-A9CF-01 13 110807652 110807652 C T COL4A1 Nonsense_Mutation p.W1578* 0.55 TCGA-ZS-A9CF-01 13 39918034 39918034 G A LHFP 3'UTR 0.46 TCGA-ZS-A9CF-01 13 80911241 80911241 G - SPRY2 Frame_Shift_Del p.C201Afs*12 0.28 TCGA-ZS-A9CF-01 14 107170000 107170000 G T IGHV1-69 Silent p.S94S 0.44 TCGA-ZS-A9CF-01 14 20248678 20248678 T C OR4M1 Missense_Mutation p.L66P 0.41 deleterious(0) probably_damaging(0.999) TCGA-ZS-A9CF-01 15 102462967 102462967 A T OR4F4 Missense_Mutation p.F99Y 0.48 tolerated(0.1) possibly_damaging(0.477) TCGA-ZS-A9CF-01 15 60824052 60824052 T A RORA Splice_Site p.X99_splice 0.46 TCGA-ZS-A9CF-01 15 63966786 63966786 A T HERC1 Missense_Mutation p.I2534K 0.49 possibly_damaging(0.841) TCGA-ZS-A9CF-01 15 74706891 74706891 T C SEMA7A Missense_Mutation p.T431A 0.43 deleterious(0.01) probably_damaging(0.973) TCGA-ZS-A9CF-01 15 74706913 74706913 G T SEMA7A Silent p.T423T 0.44 TCGA-ZS-A9CF-01 15 75094691 75094691 C A CSK Missense_Mutation p.P397H 0.49 deleterious(0.03) probably_damaging(0.999) TCGA-ZS-A9CF-01 16 56643388 56643388 T G MT2A 3'UTR 0.49 TCGA-ZS-A9CF-01 16 81066308 81066308 T A CENPN 3'UTR 0.35 TCGA-ZS-A9CF-01 17 10404770 10404770 G A MYH1 Missense_Mutation p.S1132F 0.79 deleterious(0.03) benign(0.012) TCGA-ZS-A9CF-01 17 10438678 10438678 T C MYH2 Missense_Mutation p.N660S 0.86 tolerated(0.13) benign(0.139) TCGA-ZS-A9CF-01 17 12649346 12649346 C A MYOCD Missense_Mutation p.S361Y 0.80 deleterious(0.01) probably_damaging(0.993) TCGA-ZS-A9CF-01 17 25975942 25975942 G T LGALS9 Missense_Mutation p.R334S 0.45 tolerated(0.11) benign(0.001) TCGA-ZS-A9CF-01 17 33448911 33448911 A G FNDC8 Missense_Mutation p.I67V 0.43 tolerated_low_confidence(0.07) benign(0.113) TCGA-ZS-A9CF-01 17 41346472 41346472 G A NBR1 Missense_Mutation p.E544K 0.45 tolerated(0.08) benign(0.03) TCGA-ZS-A9CF-01 17 72349069 72349069 C G KIF19 Missense_Mutation p.A697G 0.25 tolerated(0.26) benign(0.028) TCGA-ZS-A9CF-01 17 74004527 74004527 G C EVPL Missense_Mutation p.Q1587E 0.44 tolerated(1) benign(0.257) TCGA-ZS-A9CF-01 17 79089716 79089716 C T BAIAP2 Intron 0.10 TCGA-ZS-A9CF-01 18 43505857 43505857 G C EPG5 Nonsense_Mutation p.Y855* 0.66 TCGA-ZS-A9CF-01 19 1062215 1062215 G T ABCA7 Missense_Mutation p.C1872F 0.44 deleterious(0.01) probably_damaging(0.959) TCGA-ZS-A9CF-01 19 17597668 17597668 C A SLC27A1 Missense_Mutation p.A155D 0.46 deleterious(0) possibly_damaging(0.873) TCGA-ZS-A9CF-01 19 3155884 3155884 G T GNA15 Silent p.V226V 0.58 TCGA-ZS-A9CF-01 19 42830443 42830443 C T MEGF8 Silent p.A16A 0.48 TCGA-ZS-A9CF-01 19 54485510 54485510 G T CACNG8 Nonsense_Mutation p.E229* 0.88 TCGA-ZS-A9CF-01 19 57286539 57286539 G T ZIM2 Silent p.L367L 0.83 TCGA-ZS-A9CF-01 19 9049545 9049545 T A MUC16 Nonsense_Mutation p.R10696* 0.42 TCGA-ZS-A9CF-01 1 100605738 100605738 G C TRMT13 Missense_Mutation p.V109L 0.38 tolerated(0.09) benign(0.016) TCGA-ZS-A9CF-01 1 11596435 11596435 G C PTCHD2 Missense_Mutation p.V1291L 0.52 deleterious(0.05) probably_damaging(0.948) TCGA-ZS-A9CF-01 1 149872238 149872238 T A BOLA1 3'Flank 0.42 TCGA-ZS-A9CF-01 1 169521852 169521852 C A F5 Missense_Mutation p.M413I 0.26 tolerated(0.54) benign(0.001) TCGA-ZS-A9CF-01 1 173840092 173840092 A G ZBTB37 Silent p.V243V 0.31 TCGA-ZS-A9CF-01 1 182922289 182922289 C A SHCBP1L 5'UTR 0.31 TCGA-ZS-A9CF-01 1 200870236 200870236 C T C1orf106 Missense_Mutation p.R157W 0.36 tolerated(0.14) benign(0.018) TCGA-ZS-A9CF-01 1 212208857 212208857 C T INTS7 5'UTR 0.53 TCGA-ZS-A9CF-01 1 231700450 231700450 T C TSNAX Silent p.V224V 0.43 TCGA-ZS-A9CF-01 1 237794838 237794838 C G RYR2 Silent p.S2184S 0.41 TCGA-ZS-A9CF-01 1 246498775 246498775 T C SMYD3 Missense_Mutation p.K77R 0.51 tolerated(0.29) benign(0.035) TCGA-ZS-A9CF-01 1 33238677 33238677 T C KIAA1522 3'UTR 0.31 TCGA-ZS-A9CF-01 1 47685258 47685258 G A TAL1 3'UTR 0.70 TCGA-ZS-A9CF-01 20 13858206 13858206 G T SEL1L2 Missense_Mutation p.A329E 0.06 deleterious(0) probably_damaging(0.995) TCGA-ZS-A9CF-01 20 31024023 31024023 T C ASXL1 Silent p.L1170L 0.46 TCGA-ZS-A9CF-01 20 31622067 31622067 G A BPIFB6 Silent p.V91V 0.43 TCGA-ZS-A9CF-01 20 33862533 33862533 C G MMP24 3'UTR 0.47 TCGA-ZS-A9CF-01 20 34568456 34568456 G A CNBD2 Missense_Mutation p.V107I 0.37 deleterious(0.03) benign(0.029) TCGA-ZS-A9CF-01 20 50139710 50139710 T G NFATC2 Missense_Mutation p.Q357P 0.52 deleterious(0.02) possibly_damaging(0.501) TCGA-ZS-A9CF-01 21 22782603 22782603 A T NCAM2 Missense_Mutation p.K402M 0.39 deleterious(0) benign(0.116) TCGA-ZS-A9CF-01 21 34018849 34018849 G A SYNJ1 Missense_Mutation p.S1073L 0.42 tolerated(0.21) benign(0.017) TCGA-ZS-A9CF-01 21 46047778 46047778 T G KRTAP10-9 Silent p.S230S 0.45 TCGA-ZS-A9CF-01 22 22890574 22890574 A C PRAME Missense_Mutation p.L482R 0.42 deleterious(0) possibly_damaging(0.667) TCGA-ZS-A9CF-01 2 100900686 100900686 A G LONRF2 3'UTR 0.44 TCGA-ZS-A9CF-01 2 105977579 105977579 A G FHL2 3'UTR 0.47 TCGA-ZS-A9CF-01 2 121745822 121745822 G A GLI2 Missense_Mutation p.G778R 0.43 tolerated(0.1) benign(0.026) TCGA-ZS-A9CF-01 2 136570094 136570094 T A LCT Missense_Mutation p.N714Y 0.32 deleterious(0) benign(0.128) TCGA-ZS-A9CF-01 2 162757632 162757632 T - SLC4A10 Intron 0.29 TCGA-ZS-A9CF-01 2 1653379 1653379 C T PXDN Missense_Mutation p.A725T 0.43 tolerated(0.11) benign(0.201) TCGA-ZS-A9CF-01 2 170936401 170936401 G C UBR3 Missense_Mutation p.Q1759H 0.44 deleterious(0.02) probably_damaging(0.993) TCGA-ZS-A9CF-01 2 178257523 178257523 G T AGPS Silent p.A2A 0.38 TCGA-ZS-A9CF-01 2 179197657 179197657 T C OSBPL6 Silent p.Y182Y 0.40 TCGA-ZS-A9CF-01 2 179479290 179479290 A T TTN Silent p.T16317T 0.37 TCGA-ZS-A9CF-01 2 215674279 215674279 C A BARD1 Silent p.R5R 0.38 TCGA-ZS-A9CF-01 2 242758455 242758456 - G NEU4 3'UTR 0.33 TCGA-ZS-A9CF-01 2 70443879 70443879 A C TIA1 Intron 0.29 TCGA-ZS-A9CF-01 2 73316478 73316478 C T RAB11FIP5 Intron 0.53 TCGA-ZS-A9CF-01 2 95941842 95941842 C A PROM2 Silent p.A153A 0.44 TCGA-ZS-A9CF-01 3 124449275 124449275 C T UMPS 5'UTR 0.53 TCGA-ZS-A9CF-01 3 150876484 150876484 G A MED12L Missense_Mutation p.M245I 0.58 deleterious(0.01) benign(0.23) TCGA-ZS-A9CF-01 3 195473919 195473919 A C MUC4 3'UTR 0.22 TCGA-ZS-A9CF-01 3 38962724 38962724 G T SCN11A Silent p.A245A 0.37 TCGA-ZS-A9CF-01 3 4716014 4716014 A T ITPR1 Missense_Mutation p.K847M 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-ZS-A9CF-01 3 47459072 47459072 G A SCAP Missense_Mutation p.R898W 0.49 deleterious(0.01) probably_damaging(0.997) TCGA-ZS-A9CF-01 3 97869095 97869095 T C OR5H14 Missense_Mutation p.I289T 0.40 deleterious(0) probably_damaging(1) TCGA-ZS-A9CF-01 4 156618268 156618268 C - GUCY1A3 Frame_Shift_Del p.P84Qfs*6 0.29 TCGA-ZS-A9CF-01 4 165878676 165878676 C T FAM218A 3'UTR 0.49 TCGA-ZS-A9CF-01 4 185550584 185550586 ACT CG CASP3 Frame_Shift_Del p.Q225Pfs*100 0.29 TCGA-ZS-A9CF-01 4 188924988 188924988 T C ZFP42 3'UTR 0.51 TCGA-ZS-A9CF-01 4 69962260 69962260 G T UGT2B7 Missense_Mutation p.V8L 0.30 tolerated(0.17) benign(0.011) TCGA-ZS-A9CF-01 4 71522068 71522068 G - IGJ Frame_Shift_Del p.P153Qfs*13 0.31 TCGA-ZS-A9CF-01 4 74274521 74274524 AAGT - ALB Splice_Site p.X161_splice 0.36 TCGA-ZS-A9CF-01 4 74303922 74303922 G C AFP Missense_Mutation p.E57Q 0.44 tolerated(0.26) possibly_damaging(0.649) TCGA-ZS-A9CF-01 5 120022461 120022461 G A PRR16 3'UTR 0.44 TCGA-ZS-A9CF-01 5 128301687 128301687 G T SLC27A6 5'UTR 0.54 TCGA-ZS-A9CF-01 5 132038328 132038328 G T KIF3A Silent p.T533T 0.05 TCGA-ZS-A9CF-01 5 139266992 139266992 G T NRG2 Missense_Mutation p.R269S 0.51 tolerated(0.15) benign(0.349) TCGA-ZS-A9CF-01 5 145890262 145890262 C G TCERG1 3'UTR 0.44 TCGA-ZS-A9CF-01 5 147813252 147813252 A T FBXO38 Missense_Mutation p.I862F 0.93 deleterious(0) probably_damaging(0.983) TCGA-ZS-A9CF-01 5 149435893 149435893 C T CSF1R Silent p.R777R 0.81 TCGA-ZS-A9CF-01 5 153054114 153054114 G A GRIA1 Missense_Mutation p.G262S 0.41 deleterious(0.01) probably_damaging(1) TCGA-ZS-A9CF-01 5 175112488 175112488 G A HRH2 Missense_Mutation p.A385T 0.47 tolerated_low_confidence(0.21) benign(0.004) TCGA-ZS-A9CF-01 5 34043130 34043130 T G C1QTNF3 Missense_Mutation p.N34T 0.49 tolerated_low_confidence(0.08) benign(0.021) TCGA-ZS-A9CF-01 6 31593819 31593819 C T PRRC2A Missense_Mutation p.P288S 0.38 unknown(0) TCGA-ZS-A9CF-01 6 31760169 31760169 C G VARS Missense_Mutation p.E262D 0.18 tolerated(0.25) benign(0.055) TCGA-ZS-A9CF-01 6 42214272 42214272 C G TRERF1 Missense_Mutation p.K889N 0.45 deleterious(0.04) benign(0.403) TCGA-ZS-A9CF-01 6 43418033 43418033 G T ABCC10 3'UTR 0.65 TCGA-ZS-A9CF-01 6 49421336 49421336 C G MUT Missense_Mutation p.A349P 0.35 deleterious_low_confidence(0.04) benign(0.272) TCGA-ZS-A9CF-01 6 79577582 79577582 C T IRAK1BP1 Nonsense_Mutation p.Q97* 0.79 TCGA-ZS-A9CF-01 6 84925113 84925113 C T KIAA1009 Silent p.E130E 0.87 TCGA-ZS-A9CF-01 6 96660949 96660949 T A FUT9 3'UTR 0.84 TCGA-ZS-A9CF-01 7 150713028 150713028 T A ATG9B Missense_Mutation p.T910S 0.81 tolerated_low_confidence(0.12) benign(0.108) TCGA-ZS-A9CF-01 7 82583509 82583509 C T PCLO Missense_Mutation p.D2254N 0.54 unknown(0) TCGA-ZS-A9CF-01 7 99717482 99717482 G T CNPY4 Nonsense_Mutation p.E39* 0.06 TCGA-ZS-A9CF-01 8 101276968 101276968 T G RNF19A Missense_Mutation p.N413H 0.43 tolerated(0.07) benign(0.349) TCGA-ZS-A9CF-01 8 102701577 102701577 C A NCALD Missense_Mutation p.R181L 0.40 tolerated(0.19) benign(0.149) TCGA-ZS-A9CF-01 8 106331209 106331209 C A ZFPM2 Silent p.R14R 0.48 TCGA-ZS-A9CF-01 8 146228388 146228388 T G ZNF252P-AS1 RNA 0.25 TCGA-ZS-A9CF-01 8 22085742 22085742 C G PHYHIP Missense_Mutation p.K43N 0.88 deleterious(0.01) probably_damaging(0.972) TCGA-ZS-A9CF-01 9 125563246 125563246 T C OR1K1 Missense_Mutation p.V282A 0.40 deleterious(0) benign(0.122) TCGA-ZS-A9CF-01 9 125719407 125719407 A G RABGAP1 Silent p.E23E 0.49 TCGA-ZS-A9CF-01 9 130565239 130565239 A T FPGS Silent p.L12L 0.60 TCGA-ZS-A9CF-01 9 6610207 6610208 - GT GLDC Frame_Shift_Ins p.L207Hfs*25 0.24 TCGA-ZS-A9CF-01 9 70919051 70919051 C T FOXD4L3 Missense_Mutation p.A395V 0.36 deleterious_low_confidence(0) benign(0.003) TCGA-ZS-A9CF-01 9 87635185 87635185 T G NTRK2 Missense_Mutation p.F746C 0.52 deleterious(0) probably_damaging(0.997) TCGA-ZS-A9CF-01 X 100496749 100496749 C T DRP2 Missense_Mutation p.R218C 0.94 deleterious(0.02) probably_damaging(0.996) TCGA-ZS-A9CF-01 X 100496750 100496750 G T DRP2 Missense_Mutation p.R218L 0.94 deleterious(0.02) probably_damaging(0.966) TCGA-ZS-A9CF-01 X 105279299 105279299 G A SERPINA7 Nonsense_Mutation p.Q234* 0.86 TCGA-ZS-A9CF-01 X 128957708 128957708 T A ZDHHC9 Missense_Mutation p.K145M 0.89 deleterious(0) probably_damaging(0.946) TCGA-ZS-A9CF-01 X 152959837 152959837 G C SLC6A8 Silent p.S477S 0.96 TCGA-ZS-A9CF-01 X 30269467 30269467 T C MAGEB1 Missense_Mutation p.L286P 0.06 deleterious(0) probably_damaging(0.998) TCGA-ZS-A9CF-01 X 34962125 34962125 C T FAM47B Missense_Mutation p.R393W 0.96 tolerated(0.1) possibly_damaging(0.791) TCGA-ZS-A9CF-01 X 45017131 45017131 G T CXorf36 Silent p.G167G 0.12 TCGA-ZS-A9CF-01 X 72224900 72224900 C A PABPC1L2B 3'UTR 0.83 TCGA-ZS-A9CG-01 10 101980381 101980381 T - CHUK Frame_Shift_Del p.K146Nfs*5 0.32 TCGA-ZS-A9CG-01 10 11330509 11330509 A G CELF2 Missense_Mutation p.S324G 0.41 tolerated(0.07) benign(0.002) TCGA-ZS-A9CG-01 10 123903126 123903126 G C TACC2 Silent p.S1913S 0.28 TCGA-ZS-A9CG-01 10 123969922 123969922 T C TACC2 Silent p.S1994S 0.38 TCGA-ZS-A9CG-01 10 15115380 15115380 A G OLAH 3'UTR 0.33 TCGA-ZS-A9CG-01 10 51028218 51028218 G T PARG Silent p.L438L 0.07 TCGA-ZS-A9CG-01 11 119168164 119168165 - CATCTAT CBL Frame_Shift_Ins p.T745Ifs*10 0.16 TCGA-ZS-A9CG-01 11 122671897 122671897 T G UBASH3B Silent p.G484G 0.41 TCGA-ZS-A9CG-01 11 123065676 123065676 C T CLMP 5'UTR 0.39 TCGA-ZS-A9CG-01 11 123493478 123493478 C T GRAMD1B 3'UTR 0.36 TCGA-ZS-A9CG-01 11 18500385 18500385 C T LDHAL6A Missense_Mutation p.L323F 0.34 deleterious(0) probably_damaging(0.983) TCGA-ZS-A9CG-01 11 44074236 44074242 TCTATGG - ACCSL Frame_Shift_Del p.F266Lfs*15 0.22 TCGA-ZS-A9CG-01 12 119909936 119909936 T A CCDC60 Missense_Mutation p.I103N 0.31 tolerated(0.31) benign(0.358) TCGA-ZS-A9CG-01 12 19496279 19496279 G A PLEKHA5 Missense_Mutation p.R858H 0.36 tolerated(0.73) possibly_damaging(0.902) TCGA-ZS-A9CG-01 12 80889873 80889873 A G PTPRQ Missense_Mutation p.T656A 0.12 deleterious(0) probably_damaging(0.971) TCGA-ZS-A9CG-01 12 8248299 8248299 G A NECAP1 Missense_Mutation p.S260N 0.37 tolerated(0.18) possibly_damaging(0.474) TCGA-ZS-A9CG-01 13 39264425 39264425 A G FREM2 Missense_Mutation p.T982A 0.13 tolerated(0.09) benign(0.122) TCGA-ZS-A9CG-01 14 23549129 23549129 G A ACIN1 Missense_Mutation p.P530L 0.40 benign(0.086) TCGA-ZS-A9CG-01 14 31613412 31613412 T A HECTD1 Missense_Mutation p.N895Y 0.14 deleterious(0.02) possibly_damaging(0.706) TCGA-ZS-A9CG-01 14 34904351 34904351 C T SPTSSA 3'UTR 0.32 TCGA-ZS-A9CG-01 14 52535631 52535631 C G NID2 Missense_Mutation p.A28P 0.37 deleterious(0.04) possibly_damaging(0.908) TCGA-ZS-A9CG-01 14 75265439 75265439 C T YLPM1 Missense_Mutation p.P1147S 0.37 benign(0.224) TCGA-ZS-A9CG-01 14 99640842 99640842 C T BCL11B Silent p.P777P 0.29 TCGA-ZS-A9CG-01 15 101593240 101593240 C T LRRK1 Missense_Mutation p.A1268V 0.31 deleterious(0) probably_damaging(1) TCGA-ZS-A9CG-01 15 40398071 40398071 G T BMF Missense_Mutation p.L73I 0.41 tolerated(0.18) probably_damaging(0.995) TCGA-ZS-A9CG-01 15 54305886 54305886 A G UNC13C Silent p.E262E 0.33 TCGA-ZS-A9CG-01 16 3534783 3534783 C A NAA60 Missense_Mutation p.S219R 0.41 deleterious(0.03) benign(0.074) TCGA-ZS-A9CG-01 16 723032 723032 C T RHOT2 Silent p.R544R 0.33 TCGA-ZS-A9CG-01 16 82660622 82660622 G T CDH13 5'UTR 0.06 TCGA-ZS-A9CG-01 17 11882000 11882000 G T ZNF18 Silent p.L308L 0.27 TCGA-ZS-A9CG-01 17 35937549 35937549 C T SYNRG Missense_Mutation p.G251E 0.37 tolerated(0.24) benign(0.027) TCGA-ZS-A9CG-01 17 48539553 48539553 C T ACSF2 Silent p.C172C 0.49 TCGA-ZS-A9CG-01 17 63676 63676 T A RPH3AL Silent p.A305A 0.22 TCGA-ZS-A9CG-01 18 21437935 21437935 G C LAMA3 Missense_Mutation p.G1422R 0.49 possibly_damaging(0.866) TCGA-ZS-A9CG-01 18 6993751 6993751 G A LAMA1 Missense_Mutation p.L1633F 0.43 tolerated(0.33) probably_damaging(0.913) TCGA-ZS-A9CG-01 19 10089907 10089907 T A COL5A3 Silent p.T925T 0.13 TCGA-ZS-A9CG-01 19 1556821 1556821 C T MEX3D Missense_Mutation p.V233M 0.34 deleterious(0) probably_damaging(0.92) TCGA-ZS-A9CG-01 19 2811648 2811648 G C THOP1 Missense_Mutation p.Q608H 0.31 deleterious(0) probably_damaging(1) TCGA-ZS-A9CG-01 19 38912788 38912788 G A RASGRP4 Missense_Mutation p.S10F 0.29 deleterious(0) possibly_damaging(0.62) TCGA-ZS-A9CG-01 19 4216727 4216727 G T ANKRD24 Missense_Mutation p.A524S 0.34 tolerated(0.12) benign(0.005) TCGA-ZS-A9CG-01 19 50368637 50368637 C T PNKP Missense_Mutation p.G82E 0.10 deleterious(0.01) benign(0.081) TCGA-ZS-A9CG-01 19 52477676 52477676 T C ZNF350 5'UTR 0.05 TCGA-ZS-A9CG-01 19 55815053 55815053 T C BRSK1 Missense_Mutation p.V382A 0.34 deleterious(0.01) benign(0.153) TCGA-ZS-A9CG-01 1 158648295 158648295 C A SPTA1 Missense_Mutation p.Q236H 0.35 tolerated(0.14) possibly_damaging(0.516) TCGA-ZS-A9CG-01 1 159802783 159802783 A G SLAMF8 Missense_Mutation p.Y162C 0.48 deleterious(0) probably_damaging(1) TCGA-ZS-A9CG-01 1 190067645 190067645 C A BRINP3 Missense_Mutation p.D602Y 0.28 deleterious(0) probably_damaging(0.998) TCGA-ZS-A9CG-01 1 200842406 200842406 C T GPR25 Silent p.L81L 0.50 TCGA-ZS-A9CG-01 1 206658535 206658535 C T IKBKE Missense_Mutation p.A503V 0.23 tolerated(0.18) benign(0.006) TCGA-ZS-A9CG-01 1 22216583 22216583 A T HSPG2 Missense_Mutation p.N155K 0.12 benign(0.013) TCGA-ZS-A9CG-01 1 53680129 53680129 C T C1orf123 3'UTR 0.50 TCGA-ZS-A9CG-01 1 62516635 62516635 T G INADL Intron 0.09 TCGA-ZS-A9CG-01 1 79357337 79357337 C A ELTD1 Missense_Mutation p.G628C 0.48 deleterious(0.01) probably_damaging(1) TCGA-ZS-A9CG-01 20 33163022 33163022 G C PIGU Missense_Mutation p.C360W 0.33 deleterious(0) possibly_damaging(0.868) TCGA-ZS-A9CG-01 20 48130860 48130860 G A PTGIS Missense_Mutation p.R310C 0.32 deleterious(0.01) possibly_damaging(0.752) TCGA-ZS-A9CG-01 20 62612631 62612631 G T PRPF6 Missense_Mutation p.M11I 0.33 tolerated(0.11) benign(0.003) TCGA-ZS-A9CG-01 22 22735584 22735584 G A IGLV1-44 Missense_Mutation p.R74Q 0.09 deleterious_low_confidence(0) possibly_damaging(0.606) TCGA-ZS-A9CG-01 22 39476966 39476966 A T APOBEC3G Missense_Mutation p.E67V 0.38 deleterious(0) possibly_damaging(0.864) TCGA-ZS-A9CG-01 22 42525162 42525162 G C CYP2D6 Silent p.P126P 0.27 TCGA-ZS-A9CG-01 2 120124633 120124633 T G DBI 5'Flank 0.10 TCGA-ZS-A9CG-01 2 180008343 180008343 T A SESTD1 Missense_Mutation p.E275D 0.34 tolerated(1) benign(0) TCGA-ZS-A9CG-01 2 206994823 206994823 A C NDUFS1 Missense_Mutation p.I580S 0.43 deleterious(0) possibly_damaging(0.756) TCGA-ZS-A9CG-01 2 226447154 226447154 C T NYAP2 Missense_Mutation p.P341S 0.39 tolerated(0.07) probably_damaging(1) TCGA-ZS-A9CG-01 3 3095652 3095652 G A CNTN4 Silent p.K991K 0.04 TCGA-ZS-A9CG-01 3 41266103 41266103 G A CTNNB1 Missense_Mutation p.G34R 0.70 deleterious(0) probably_damaging(0.997) TCGA-ZS-A9CG-01 3 52437545 52437545 A T BAP1 Missense_Mutation p.L539Q 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.794) TCGA-ZS-A9CG-01 3 77147493 77147493 T C ROBO2 Splice_Site p.X146_splice 0.66 TCGA-ZS-A9CG-01 4 103528819 103528819 T G NFKB1 Missense_Mutation p.V713G 0.35 deleterious(0) probably_damaging(0.929) TCGA-ZS-A9CG-01 4 185552301 185552301 C T CASP3 Missense_Mutation p.G165D 0.39 deleterious(0) probably_damaging(1) TCGA-ZS-A9CG-01 4 26483748 26483748 C T CCKAR Missense_Mutation p.D267N 0.38 tolerated(0.15) probably_damaging(0.913) TCGA-ZS-A9CG-01 4 74274521 74274524 AAGT - ALB Splice_Site p.X161_splice 0.29 TCGA-ZS-A9CG-01 4 77680796 77680796 T C SHROOM3 Missense_Mutation p.M1766T 0.37 deleterious(0) possibly_damaging(0.787) TCGA-ZS-A9CG-01 5 110443041 110443041 G C WDR36 Missense_Mutation p.G466A 0.33 deleterious(0) possibly_damaging(0.847) TCGA-ZS-A9CG-01 5 133887742 133887742 G T JADE2 Missense_Mutation p.V52F 0.38 deleterious(0) probably_damaging(0.999) TCGA-ZS-A9CG-01 5 135692611 135692611 G A TRPC7 Silent p.D155D 0.39 TCGA-ZS-A9CG-01 5 145719608 145719608 G A POU4F3 Silent p.A206A 0.36 TCGA-ZS-A9CG-01 5 41057463 41057463 C T MROH2B Splice_Site p.X253_splice 0.35 TCGA-ZS-A9CG-01 5 93775757 93775757 G T KIAA0825 Missense_Mutation p.N809K 0.33 tolerated(0.08) benign(0.125) TCGA-ZS-A9CG-01 6 106552764 106552764 C T PRDM1 Silent p.V243V 0.36 TCGA-ZS-A9CG-01 6 24291202 24291202 C A DCDC2 Missense_Mutation p.S221I 0.15 tolerated(0.4) benign(0.156) TCGA-ZS-A9CG-01 6 30558377 30558377 G A ABCF1 Missense_Mutation p.E813K 0.38 deleterious(0.02) benign(0.235) TCGA-ZS-A9CG-01 6 49407923 49407923 A T MUT Missense_Mutation p.F651Y 0.34 deleterious_low_confidence(0) probably_damaging(1) TCGA-ZS-A9CG-01 6 74121953 74121953 C A DDX43 Missense_Mutation p.R436S 0.54 deleterious(0) probably_damaging(0.961) TCGA-ZS-A9CG-01 6 76022223 76022223 G A FILIP1 Missense_Mutation p.L1109F 0.36 tolerated(0.08) probably_damaging(0.972) TCGA-ZS-A9CG-01 7 102952611 102952611 G A PMPCB Intron 0.27 TCGA-ZS-A9CG-01 7 103008217 103008217 A T PSMC2 Nonsense_Mutation p.R369* 0.24 TCGA-ZS-A9CG-01 7 128852200 128852200 T A SMO Missense_Mutation p.W758R 0.37 tolerated_low_confidence(0.45) benign(0) TCGA-ZS-A9CG-01 7 137154301 137154301 A G DGKI Missense_Mutation p.L831P 0.40 deleterious(0) possibly_damaging(0.907) TCGA-ZS-A9CG-01 7 138603191 138603191 T C KIAA1549 Missense_Mutation p.H394R 0.39 tolerated(0.06) benign(0) TCGA-ZS-A9CG-01 7 157926453 157926453 G T PTPRN2 Missense_Mutation p.A491D 0.11 tolerated(0.14) benign(0.216) TCGA-ZS-A9CG-01 7 158715203 158715203 C A WDR60 Missense_Mutation p.P686H 0.39 deleterious(0) probably_damaging(0.953) TCGA-ZS-A9CG-01 7 2274689 2274689 A C FTSJ2 3'UTR 0.12 TCGA-ZS-A9CG-01 7 45750131 45750131 C T ADCY1 Silent p.I979I 0.39 TCGA-ZS-A9CG-01 7 84651739 84651739 T A SEMA3D Missense_Mutation p.D461V 0.41 deleterious(0) probably_damaging(0.999) TCGA-ZS-A9CG-01 7 87195498 87195498 A T ABCB1 Missense_Mutation p.M197K 0.34 deleterious(0.02) benign(0.035) TCGA-ZS-A9CG-01 8 124369923 124369923 G A ATAD2 Missense_Mutation p.A479V 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-ZS-A9CG-01 8 134147092 134147092 T A TG 3'UTR 0.21 TCGA-ZS-A9CG-01 8 143624960 143624960 A G BAI1 Splice_Site p.X1484_splice 0.33 TCGA-ZS-A9CG-01 8 22865129 22865129 C G RHOBTB2 Silent p.V479V 0.57 TCGA-ZS-A9CG-01 8 27888861 27888861 T C NUGGC Missense_Mutation p.I603V 0.19 deleterious(0.04) benign(0.011) TCGA-ZS-A9CG-01 8 48883070 48883070 G A MCM4 Splice_Site p.X479_splice 0.05 TCGA-ZS-A9CG-01 8 62212607 62212607 C A CLVS1 Missense_Mutation p.A74D 0.70 tolerated(0.32) benign(0.029) TCGA-ZS-A9CG-01 8 66582142 66582142 T A MTFR1 5'UTR 0.20 TCGA-ZS-A9CG-01 8 91095028 91095028 G A CALB1 5'UTR 0.16 TCGA-ZS-A9CG-01 9 74365256 74365256 C A TMEM2 Missense_Mutation p.A12S 0.40 tolerated_low_confidence(0.07) benign(0.24) TCGA-ZS-A9CG-01 9 96070795 96070795 C T WNK2 Silent p.L2186L 0.14 TCGA-ZS-A9CG-01 X 133303476 133303476 G T MIR363 RNA 0.84 TCGA-ZS-A9CG-01 X 306923 306923 T C PPP2R3B Missense_Mutation p.S289G 0.17 deleterious(0.05) benign(0.26)