sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-3H-AB3K-01 10 16943370 16943370 C A CUBN Silent p.S2717S 0.33 TCGA-3H-AB3K-01 10 99330063 99330063 C T UBTD1 Missense_Mutation p.S156F 0.31 deleterious(0) probably_damaging(0.999) TCGA-3H-AB3K-01 11 124493013 124493013 C T TBRG1 Missense_Mutation p.R12W 0.31 tolerated_low_confidence(0.07) benign(0) TCGA-3H-AB3K-01 11 46799808 46799808 T G CKAP5 Silent p.R877R 0.28 TCGA-3H-AB3K-01 11 55761374 55761374 G T OR5F1 Missense_Mutation p.S243Y 0.32 deleterious(0) probably_damaging(0.997) TCGA-3H-AB3K-01 13 25338357 25338357 T A RNF17 Missense_Mutation p.S6T 0.35 tolerated_low_confidence(0.05) possibly_damaging(0.483) TCGA-3H-AB3K-01 17 44803926 44803926 T G NSF Missense_Mutation p.D591E 0.36 deleterious(0.01) possibly_damaging(0.819) TCGA-3H-AB3K-01 17 4720549 4720549 G A PLD2 Missense_Mutation p.V604I 0.52 tolerated(0.11) benign(0.432) TCGA-3H-AB3K-01 19 19387793 19387793 C G SUGP1 Missense_Mutation p.R625T 0.77 deleterious(0) probably_damaging(0.999) TCGA-3H-AB3K-01 1 158056460 158056460 G T KIRREL Silent p.G195G 0.37 TCGA-3H-AB3K-01 1 29481324 29481324 T C SRSF4 Silent p.K154K 0.09 TCGA-3H-AB3K-01 22 30032794 30032794 C T NF2 Nonsense_Mutation p.R57* 0.52 TCGA-3H-AB3K-01 2 27465836 27465836 G A CAD Missense_Mutation p.E2159K 0.36 tolerated(0.15) benign(0.006) TCGA-3H-AB3K-01 2 98744826 98744826 G A VWA3B Missense_Mutation p.G276D 0.42 tolerated(0.65) benign(0.029) TCGA-3H-AB3K-01 3 52442605 52442606 AT - BAP1 Frame_Shift_Del p.I47Lfs*21 0.42 TCGA-3H-AB3K-01 3 52521658 52521658 A T NISCH Missense_Mutation p.H717L 0.37 tolerated(0.38) benign(0.032) TCGA-3H-AB3K-01 5 31526757 31526757 G A DROSHA Missense_Mutation p.P95S 0.30 tolerated_low_confidence(0.49) benign(0.064) TCGA-3H-AB3K-01 6 106960235 106960235 G A AIM1 Missense_Mutation p.G7S 0.72 tolerated(0.81) probably_damaging(0.997) TCGA-3H-AB3K-01 8 142229036 142229036 A C SLC45A4 Missense_Mutation p.F184V 0.35 deleterious(0) probably_damaging(0.953) TCGA-3H-AB3K-01 9 139927558 139927558 C T C9orf139 Missense_Mutation p.P15S 0.38 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-3H-AB3L-01 10 15761719 15761719 C A ITGA8 Missense_Mutation p.A18S 0.51 tolerated(0.61) probably_damaging(0.964) TCGA-3H-AB3L-01 10 95517946 95517946 C A LGI1 Silent p.P15P 0.09 TCGA-3H-AB3L-01 11 62529128 62529129 AC - POLR2G Frame_Shift_Del p.Y3Sfs*49 0.24 TCGA-3H-AB3L-01 11 87013452 87013452 G A TMEM135 Missense_Mutation p.M222I 0.08 tolerated(1) benign(0) TCGA-3H-AB3L-01 12 101018283 101018283 C T GAS2L3 Missense_Mutation p.S567F 0.12 deleterious(0.02) possibly_damaging(0.553) TCGA-3H-AB3L-01 12 91449171 91449171 A T KERA Splice_Site p.X296_splice 0.28 TCGA-3H-AB3L-01 14 59797316 59797333 GAAAGAGAAACTTGAAAA - DAAM1 In_Frame_Del p.K491_K496del 0.15 TCGA-3H-AB3L-01 15 31775485 31775485 G A OTUD7A 3'UTR 0.17 TCGA-3H-AB3L-01 15 80867419 80867419 G A ARNT2 Missense_Mutation p.R494Q 0.11 deleterious(0.02) possibly_damaging(0.602) TCGA-3H-AB3L-01 16 23457164 23457165 TT - COG7 Frame_Shift_Del p.K96Ifs*2 0.23 TCGA-3H-AB3L-01 16 49672565 49672565 G C ZNF423 Missense_Mutation p.F166L 0.10 deleterious(0.01) probably_damaging(0.995) TCGA-3H-AB3L-01 16 57849490 57849490 G A CTD-2600O9.1 5'UTR 0.29 TCGA-3H-AB3L-01 16 69317950 69317950 G C SNTB2 Splice_Site p.X383_splice 0.31 TCGA-3H-AB3L-01 17 19186446 19186446 C G EPN2 Missense_Mutation p.S5C 0.39 deleterious(0) probably_damaging(0.994) TCGA-3H-AB3L-01 17 57759636 57759636 C T CLTC Silent p.N1149N 0.33 TCGA-3H-AB3L-01 17 73177275 73177275 G A SUMO2 Silent p.V10V 0.32 TCGA-3H-AB3L-01 17 7578534 7578534 C A TP53 Missense_Mutation p.K132N 0.50 deleterious(0) probably_damaging(1) TCGA-3H-AB3L-01 17 76395431 76395431 C T PGS1 Missense_Mutation p.R172W 0.18 deleterious(0) possibly_damaging(0.892) TCGA-3H-AB3L-01 19 1071325 1071325 A C HMHA1 Intron 0.10 TCGA-3H-AB3L-01 19 50096659 50096659 C T PRR12 Silent p.H54H 0.36 TCGA-3H-AB3L-01 19 6720607 6720607 G A C3 5'UTR 0.15 TCGA-3H-AB3L-01 1 145541873 145541873 A T ITGA10 Silent p.G1132G 0.37 TCGA-3H-AB3L-01 1 18702837 18702837 C T IGSF21 Missense_Mutation p.P350L 0.05 tolerated(0.14) probably_damaging(1) TCGA-3H-AB3L-01 1 3712768 3712768 C G LRRC47 Silent p.L91L 0.31 TCGA-3H-AB3L-01 1 52698917 52698917 C T ZFYVE9 Silent p.D13D 0.26 TCGA-3H-AB3L-01 1 55282708 55282708 C T C1orf177 Missense_Mutation p.T366I 0.22 deleterious(0.05) possibly_damaging(0.735) TCGA-3H-AB3L-01 20 49626486 49626486 G A KCNG1 Silent p.F130F 0.28 TCGA-3H-AB3L-01 21 39763579 39763579 A C ERG Splice_Site p.X298_splice 0.25 TCGA-3H-AB3L-01 2 103324600 103324600 C T SLC9A2 Silent p.D697D 0.35 TCGA-3H-AB3L-01 2 11721022 11721022 G T GREB1 Intron 0.30 TCGA-3H-AB3L-01 2 65300186 65300186 A C CEP68 Intron 0.24 TCGA-3H-AB3L-01 3 184060625 184060625 A C FAM131A Missense_Mutation p.D201A 0.35 deleterious(0) probably_damaging(0.986) TCGA-3H-AB3L-01 3 48642136 48642136 G A UQCRC1 Silent p.T125T 0.29 TCGA-3H-AB3L-01 5 31936229 31936232 GAGA - PDZD2 Intron 0.15 TCGA-3H-AB3L-01 6 170858207 170858207 G A PSMB1 Intron 0.71 TCGA-3H-AB3L-01 6 26252156 26252156 G A HIST1H2BH Missense_Mutation p.R93K 0.27 deleterious_low_confidence(0.02) benign(0.089) TCGA-3H-AB3L-01 7 127342487 127342487 A G SND1 Splice_Site p.X197_splice 0.24 TCGA-3H-AB3L-01 8 109465366 109465366 G T EMC2 Missense_Mutation p.A99S 0.27 tolerated(0.08) benign(0.393) TCGA-3H-AB3M-01 10 91066050 91066050 G A IFIT2 Missense_Mutation p.V113I 0.43 deleterious(0) benign(0.001) TCGA-3H-AB3M-01 11 1267410 1267410 G A MUC5B Silent p.P3100P 0.67 TCGA-3H-AB3M-01 11 55889918 55889918 G T OR8H3 Missense_Mutation p.V24F 0.37 deleterious(0.02) benign(0.003) TCGA-3H-AB3M-01 11 61724448 61724448 T C BEST1 Missense_Mutation p.I145T 0.10 deleterious(0.04) benign(0.138) TCGA-3H-AB3M-01 11 6412883 6412883 A C SMPD1 Silent p.P196P 0.16 TCGA-3H-AB3M-01 11 66101585 66101585 C G RIN1 Missense_Mutation p.A466P 0.14 deleterious(0.05) possibly_damaging(0.83) TCGA-3H-AB3M-01 11 73103386 73103386 C T RELT Silent p.I166I 0.36 TCGA-3H-AB3M-01 12 122992866 122992866 T C RSRC2 Missense_Mutation p.I312V 0.08 tolerated(0.15) unknown(0) TCGA-3H-AB3M-01 12 40345009 40345009 A C SLC2A13 Intron 0.41 TCGA-3H-AB3M-01 12 50045071 50045071 A T FMNL3 Silent p.I559I 0.33 TCGA-3H-AB3M-01 12 7802085 7802085 T A APOBEC1 3'UTR 0.05 TCGA-3H-AB3M-01 12 80202342 80202342 C G PPP1R12A Missense_Mutation p.G491R 0.43 tolerated(0.05) possibly_damaging(0.721) TCGA-3H-AB3M-01 16 20974850 20974850 C A DNAH3 Silent p.S3452S 0.44 TCGA-3H-AB3M-01 16 52473535 52473535 A G TOX3 Silent p.L445L 0.33 TCGA-3H-AB3M-01 17 46675183 46675183 C G HOXB6 Missense_Mutation p.Q110H 0.04 tolerated(0.07) benign(0.013) TCGA-3H-AB3M-01 17 74901259 74901259 C T MGAT5B Silent p.F244F 0.15 TCGA-3H-AB3M-01 19 42814035 42814035 C A PRR19 Missense_Mutation p.P100H 0.71 deleterious(0.04) possibly_damaging(0.874) TCGA-3H-AB3M-01 19 813622 813622 T C LPPR3 Missense_Mutation p.N397D 0.29 tolerated(0.19) benign(0.146) TCGA-3H-AB3M-01 1 182569405 182569405 G A RGS16 3'UTR 0.33 TCGA-3H-AB3M-01 1 228400304 228400304 G A OBSCN Missense_Mutation p.D274N 0.39 probably_damaging(0.98) TCGA-3H-AB3M-01 1 248128843 248128843 C G OR2AK2 Silent p.L70L 0.42 TCGA-3H-AB3M-01 1 27706072 27706072 G T CD164L2 3'UTR 0.65 TCGA-3H-AB3M-01 20 32077990 32077990 G C CBFA2T2 5'UTR 0.20 TCGA-3H-AB3M-01 20 44838978 44838978 C T CDH22 Silent p.A418A 0.46 TCGA-3H-AB3M-01 2 100900760 100900764 TCAAT - LONRF2 Frame_Shift_Del p.N754I 0.44 TCGA-3H-AB3M-01 2 64863819 64863819 C T SERTAD2 Missense_Mutation p.V63I 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-3H-AB3M-01 2 84931284 84931284 G C DNAH6 Missense_Mutation p.E2775Q 0.09 tolerated(0.21) benign(0.426) TCGA-3H-AB3M-01 3 128369629 128369629 G C RPN1 Silent p.A5A 0.31 TCGA-3H-AB3M-01 3 184081288 184081288 G C POLR2H Missense_Mutation p.G3A 0.38 tolerated(0.08) benign(0.075) TCGA-3H-AB3M-01 3 52557884 52557884 T A STAB1 Intron 0.09 TCGA-3H-AB3M-01 4 4199549 4199549 G A OTOP1 Missense_Mutation p.R338C 0.42 tolerated(0.06) benign(0.082) TCGA-3H-AB3M-01 4 57861496 57861496 G T POLR2B Missense_Mutation p.G219V 0.66 deleterious(0.03) benign(0.04) TCGA-3H-AB3M-01 5 138860753 138860753 C G TMEM173 Silent p.L134L 0.37 TCGA-3H-AB3M-01 5 31294073 31294073 A G CDH6 Missense_Mutation p.H78R 0.32 tolerated(0.06) probably_damaging(0.992) TCGA-3H-AB3M-01 5 45262443 45262443 C A HCN1 Silent p.P751P 0.24 TCGA-3H-AB3M-01 7 148526883 148526883 G A EZH2 Nonsense_Mutation p.Q141* 0.65 TCGA-3H-AB3M-01 7 148800704 148800704 C T ZNF425 Silent p.%3D 0.06 TCGA-3H-AB3M-01 7 28449918 28449918 G A CREB5 5'Flank 0.09 TCGA-3H-AB3M-01 7 30492217 30492217 C A NOD1 Silent p.L272L 0.06 TCGA-3H-AB3M-01 7 5427780 5427780 G C TNRC18 Missense_Mutation p.P559A 0.07 benign(0.205) TCGA-3H-AB3M-01 7 7412650 7412650 C G COL28A1 Missense_Mutation p.D963H 0.43 deleterious(0) probably_damaging(0.993) TCGA-3H-AB3M-01 7 77378961 77378961 G A RSBN1L Silent p.L308L 0.19 TCGA-3H-AB3M-01 7 856276 856276 G T SUN1 Silent p.R40R 0.33 TCGA-3H-AB3M-01 7 89969830 89969830 C T GTPBP10 5'UTR 0.49 TCGA-3H-AB3M-01 8 43046732 43046732 G T HGSNAT Missense_Mutation p.C415F 0.40 deleterious(0) probably_damaging(0.998) TCGA-3H-AB3M-01 9 35717156 35717156 G A TLN1 Silent p.S815S 0.35 TCGA-3H-AB3M-01 9 86327643 86327643 G T UBQLN1 5'Flank 0.32 TCGA-3H-AB3M-01 9 97863968 97863968 C G FANCC 3'UTR 0.08 TCGA-3H-AB3M-01 X 123181347 123181347 C A STAG2 Silent p.R271R 0.45 TCGA-3H-AB3M-01 X 144337241 144337241 G C SPANXN1 Missense_Mutation p.K42N 0.11 tolerated(0.05) benign(0.05) TCGA-3H-AB3M-01 X 153698853 153698853 C T PLXNA3 Silent p.A1685A 0.33 TCGA-3H-AB3M-01 X 48418693 48418693 G A TBC1D25 Missense_Mutation p.R466Q 0.06 deleterious(0.03) possibly_damaging(0.805) TCGA-3H-AB3M-01 X 51638193 51638193 G A MAGED1 Silent p.L86L 0.10 TCGA-3H-AB3M-01 X 64744457 64744457 G C LAS1L Missense_Mutation p.D360E 0.34 tolerated(0.41) benign(0.003) TCGA-3H-AB3M-01 X 71802325 71802325 C T PHKA1 Missense_Mutation p.E1141K 0.35 tolerated(0.18) benign(0.058) TCGA-3H-AB3O-01 12 132334405 132334405 C T MMP17 Silent p.V421V 0.03 TCGA-3H-AB3O-01 15 33822851 33822851 A G RYR3 Missense_Mutation p.H113R 0.07 probably_damaging(0.981) TCGA-3H-AB3O-01 3 196746490 196746490 C A MFI2 Intron 0.07 TCGA-3H-AB3O-01 7 64438941 64438941 C T ZNF117 Silent p.E336E 0.11 TCGA-3H-AB3S-01 10 95518060 95518060 T G LGI1 Silent p.A53A 0.40 TCGA-3H-AB3S-01 11 102593328 102593328 A G MMP8 Missense_Mutation p.V60A 0.06 tolerated(0.51) benign(0.02) TCGA-3H-AB3S-01 11 1267557 1267557 C G MUC5B Silent p.G3149G 0.20 TCGA-3H-AB3S-01 11 128840436 128840436 C A ARHGAP32 Missense_Mutation p.A1544S 0.15 tolerated_low_confidence(0.47) benign(0.008) TCGA-3H-AB3S-01 11 17464326 17464326 G A ABCC8 Missense_Mutation p.T524M 0.44 tolerated(0.12) benign(0) TCGA-3H-AB3S-01 11 47611817 47611817 C A C1QTNF4 Silent p.A182A 0.06 TCGA-3H-AB3S-01 11 5173145 5173145 A C OR52A1 Missense_Mutation p.L152R 0.46 deleterious(0) possibly_damaging(0.824) TCGA-3H-AB3S-01 11 60702004 60702004 G T TMEM132A Missense_Mutation p.R536L 0.28 deleterious(0.02) possibly_damaging(0.811) TCGA-3H-AB3S-01 11 8985827 8985827 C T TMEM9B Missense_Mutation p.G12S 0.22 tolerated_low_confidence(0.5) unknown(0) TCGA-3H-AB3S-01 12 105501559 105501559 C T KIAA1033 5'UTR 0.36 TCGA-3H-AB3S-01 12 121647824 121647824 C T P2RX4 5'Flank 0.36 TCGA-3H-AB3S-01 12 53040669 53040669 A G KRT2 Silent p.L442L 0.34 TCGA-3H-AB3S-01 12 70760640 70760640 C G KCNMB4 Silent p.P42P 0.22 TCGA-3H-AB3S-01 13 103397551 103397551 T C LINC00283 RNA 0.53 TCGA-3H-AB3S-01 13 114434318 114434318 T C GRK1 Splice_Site p.X398_splice 0.36 TCGA-3H-AB3S-01 13 20235878 20235878 G A MPHOSPH8 Missense_Mutation p.G611E 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-3H-AB3S-01 13 33096392 33096392 T C N4BP2L2 Missense_Mutation p.D38G 0.26 tolerated(0.05) benign(0.096) TCGA-3H-AB3S-01 13 37453494 37453494 C T SMAD9 Silent p.E111E 0.39 TCGA-3H-AB3S-01 13 39263533 39263533 C A FREM2 Silent p.S684S 0.18 TCGA-3H-AB3S-01 14 51132154 51132154 A C SAV1 Nonsense_Mutation p.L93* 0.07 TCGA-3H-AB3S-01 14 68042709 68042709 C G PLEKHH1 Missense_Mutation p.T780S 0.18 tolerated(1) benign(0.004) TCGA-3H-AB3S-01 15 41377691 41377691 A T INO80 Missense_Mutation p.V250D 0.26 tolerated(0.61) benign(0.255) TCGA-3H-AB3S-01 15 42028468 42028469 - T MGA Frame_Shift_Ins p.E1337* 0.17 TCGA-3H-AB3S-01 15 44853299 44853299 T C EIF3J Silent p.Y243Y 0.45 TCGA-3H-AB3S-01 15 72511284 72511284 C A PKM Splice_Site p.X52_splice 0.29 TCGA-3H-AB3S-01 15 76075392 76075393 TG - RN7SL319P 5'Flank 0.36 TCGA-3H-AB3S-01 15 86338013 86338013 C T KLHL25 5'UTR 0.56 TCGA-3H-AB3S-01 15 89816637 89816637 C A FANCI Missense_Mutation p.N304K 0.37 tolerated(0.53) benign(0.002) TCGA-3H-AB3S-01 16 1259397 1259397 C T CACNA1H Silent p.D1243D 0.13 TCGA-3H-AB3S-01 16 29845281 29845281 G T MVP Silent p.V157V 0.04 TCGA-3H-AB3S-01 17 39502882 39502882 G C KRT33A Silent p.A305A 0.24 TCGA-3H-AB3S-01 17 42432116 42432116 C T FAM171A2 Missense_Mutation p.G489E 0.28 tolerated(1) possibly_damaging(0.696) TCGA-3H-AB3S-01 17 46608151 46608151 A G HOXB1 Missense_Mutation p.V39A 0.27 tolerated(0.82) benign(0.05) TCGA-3H-AB3S-01 18 673006 673006 C G TYMS 3'UTR 0.28 TCGA-3H-AB3S-01 19 40595211 40595211 T G ZNF780A Intron 0.43 TCGA-3H-AB3S-01 19 44635681 44635681 G A ZNF225 Missense_Mutation p.R305K 0.29 tolerated(0.57) possibly_damaging(0.899) TCGA-3H-AB3S-01 19 55881718 55881718 G C IL11 5'UTR 0.20 TCGA-3H-AB3S-01 19 55881719 55881719 G T IL11 5'UTR 0.22 TCGA-3H-AB3S-01 19 9046501 9046501 A G MUC16 Silent p.H11710H 0.50 TCGA-3H-AB3S-01 1 160920898 160920898 C T ITLN2 Missense_Mutation p.D126N 0.48 deleterious(0.01) benign(0.163) TCGA-3H-AB3S-01 1 226411641 226411641 C G MIXL1 Missense_Mutation p.R87G 0.27 deleterious(0) probably_damaging(0.98) TCGA-3H-AB3S-01 1 248525077 248525077 G T OR2T4 Silent p.V65V 0.19 TCGA-3H-AB3S-01 1 248525078 248525078 G T OR2T4 Missense_Mutation p.V66F 0.19 tolerated(0.16) benign(0.021) TCGA-3H-AB3S-01 1 32479571 32479571 G T KHDRBS1 5'UTR 0.47 TCGA-3H-AB3S-01 21 39671599 39671599 G A KCNJ15 Missense_Mutation p.C139Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-3H-AB3S-01 22 45281318 45281318 C A PHF21B Silent p.A455A 0.24 TCGA-3H-AB3S-01 2 103068455 103068455 T C IL18RAP Silent p.T538T 0.08 TCGA-3H-AB3S-01 2 107084708 107084708 C T RGPD3 Missense_Mutation p.A13T 0.33 tolerated(0.07) benign(0.277) TCGA-3H-AB3S-01 2 110886805 110886805 G C NPHP1 Missense_Mutation p.F614L 0.17 deleterious(0) probably_damaging(0.998) TCGA-3H-AB3S-01 2 133489610 133489610 T A NCKAP5 Missense_Mutation p.M1715L 0.39 deleterious(0.01) benign(0.014) TCGA-3H-AB3S-01 2 179476145 179476145 G A TTN Silent p.S16937S 0.30 TCGA-3H-AB3S-01 2 26257420 26257420 G A RAB10 5'UTR 0.32 TCGA-3H-AB3S-01 2 98732157 98732157 C G VWA3B Missense_Mutation p.A80G 0.40 tolerated(0.2) benign(0.39) TCGA-3H-AB3S-01 3 120068138 120068138 C T LRRC58 5'UTR 0.33 TCGA-3H-AB3S-01 3 128651726 128651726 C T RP11-723O4.6 Silent p.S402S 0.38 TCGA-3H-AB3S-01 3 172634114 172634114 G T SPATA16 Missense_Mutation p.A499E 0.22 deleterious(0.01) possibly_damaging(0.765) TCGA-3H-AB3S-01 3 52668655 52668655 G A PBRM1 Nonsense_Mutation p.Q422* 0.46 TCGA-3H-AB3S-01 4 139093070 139093070 C G SLC7A11 3'UTR 0.15 TCGA-3H-AB3S-01 4 183658032 183658032 G A TENM3 Silent p.G1013G 0.32 TCGA-3H-AB3S-01 4 71508467 71508467 G C ENAM Missense_Mutation p.G442R 0.15 deleterious(0) possibly_damaging(0.826) TCGA-3H-AB3S-01 6 119300629 119300629 C G FAM184A Missense_Mutation p.D786H 0.25 tolerated(0.06) possibly_damaging(0.881) TCGA-3H-AB3S-01 6 31783351 31783351 C T HSPA1L 5'Flank 0.34 TCGA-3H-AB3S-01 6 31842552 31842552 T - SLC44A4 Frame_Shift_Del p.V139Sfs*18 0.26 TCGA-3H-AB3S-01 6 39267035 39267035 G A KCNK17 3'UTR 0.45 TCGA-3H-AB3S-01 7 123672268 123672268 C A TMEM229A Missense_Mutation p.V264L 0.38 tolerated(1) benign(0.005) TCGA-3H-AB3S-01 7 97362019 97362019 C G TAC1 Missense_Mutation p.S32C 0.21 deleterious(0.01) possibly_damaging(0.885) TCGA-3H-AB3S-01 7 99662497 99662498 - CAT ZSCAN21 3'UTR 0.67 TCGA-3H-AB3S-01 8 1905042 1905042 C A ARHGEF10 Missense_Mutation p.D1216E 0.10 tolerated(0.81) benign(0.033) TCGA-3H-AB3S-01 8 21979125 21979125 C - HR Splice_Site p.X735_splice 0.21 TCGA-3H-AB3S-01 8 70744357 70744357 G T SLCO5A1 Missense_Mutation p.F184L 0.22 deleterious(0) possibly_damaging(0.555) TCGA-3H-AB3S-01 8 82606558 82606558 C A SLC10A5 Missense_Mutation p.G217V 0.23 deleterious(0) probably_damaging(1) TCGA-3H-AB3S-01 8 82606559 82606559 C G SLC10A5 Missense_Mutation p.G217R 0.23 deleterious(0) probably_damaging(1) TCGA-3H-AB3S-01 9 136404969 136404969 C A ADAMTSL2 Missense_Mutation p.T129K 0.05 tolerated(0.11) benign(0.105) TCGA-3H-AB3S-01 X 150869502 150869502 G T PRRG3 Missense_Mutation p.K231N 0.45 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-3H-AB3T-01 11 118377356 118377356 C T KMT2A Silent p.G3583G 0.14 TCGA-3H-AB3T-01 11 56949421 56949421 T C LRRC55 Silent p.P18P 0.19 TCGA-3H-AB3T-01 11 6632156 6632156 G A TAF10 Silent p.T218T 0.22 TCGA-3H-AB3T-01 12 122248626 122248626 C T SETD1B Missense_Mutation p.P592L 0.17 benign(0.012) TCGA-3H-AB3T-01 12 6752706 6752706 G A ACRBP Missense_Mutation p.S359L 0.35 tolerated(0.19) benign(0.084) TCGA-3H-AB3T-01 12 9303329 9303329 G A PZP Missense_Mutation p.T1432M 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-3H-AB3T-01 13 21557871 21557885 TAACCTGTTGTAATT ATTAA LATS2 Frame_Shift_Del p.N654Lfs*40 0.23 TCGA-3H-AB3T-01 14 31637675 31637675 T A HECTD1 Missense_Mutation p.D484V 0.23 tolerated(0.13) probably_damaging(0.909) TCGA-3H-AB3T-01 14 90755398 90755401 GGCT A NRDE2 In_Frame_Del p.E773_P774delinsV 0.13 TCGA-3H-AB3T-01 15 86312037 86312037 G - KLHL25 Frame_Shift_Del p.S336Qfs*9 0.27 TCGA-3H-AB3T-01 16 30663149 30663149 C T PRR14 Missense_Mutation p.P19L 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-3H-AB3T-01 16 74990491 74990491 A T WDR59 Missense_Mutation p.I41N 0.34 deleterious(0) benign(0.445) TCGA-3H-AB3T-01 17 38510722 38510722 A T RARA Missense_Mutation p.T326S 0.22 tolerated(0.07) probably_damaging(0.97) TCGA-3H-AB3T-01 17 43552917 43552917 C T PLEKHM1 Missense_Mutation p.A158T 0.26 tolerated(0.21) benign(0.086) TCGA-3H-AB3T-01 17 63533108 63533108 C T AXIN2 Missense_Mutation p.E596K 0.23 tolerated(0.17) benign(0.22) TCGA-3H-AB3T-01 17 7577111 7577111 G T TP53 Missense_Mutation p.A276D 0.41 deleterious(0) probably_damaging(0.992) TCGA-3H-AB3T-01 19 22786115 22786115 C T AC011467.1 3'Flank 0.20 TCGA-3H-AB3T-01 19 23405829 23405829 G A ZNF724P Silent p.S406S 0.25 TCGA-3H-AB3T-01 19 43965831 43965834 AGGG - LYPD3 Frame_Shift_Del p.P237Lfs*26 0.28 TCGA-3H-AB3T-01 19 56241206 56241206 C T NLRP9 Missense_Mutation p.R662Q 0.19 tolerated(1) benign(0) TCGA-3H-AB3T-01 1 150940923 150940923 G A CERS2 Missense_Mutation p.P80L 0.18 deleterious(0) benign(0.438) TCGA-3H-AB3T-01 1 152277734 152277734 G A FLG Missense_Mutation p.R3210C 0.20 unknown(0) TCGA-3H-AB3T-01 1 3477302 3477302 C T MEGF6 Intron 0.23 TCGA-3H-AB3T-01 20 2083692 2083692 T C STK35 Silent p.P191P 0.20 TCGA-3H-AB3T-01 20 32255744 32255744 G A ACTL10 Silent p.A147A 0.18 TCGA-3H-AB3T-01 20 5283346 5283346 C G PROKR2 Missense_Mutation p.M165I 0.19 deleterious(0.03) possibly_damaging(0.673) TCGA-3H-AB3T-01 22 46239616 46239616 A C ATXN10 3'UTR 0.42 TCGA-3H-AB3T-01 2 166245753 166245753 A G SCN2A Missense_Mutation p.I1813V 0.19 deleterious(0.04) benign(0.077) TCGA-3H-AB3T-01 2 191862622 191862622 C T STAT1 Missense_Mutation p.G249R 0.21 deleterious(0) probably_damaging(0.999) TCGA-3H-AB3T-01 2 216964702 216964702 G A TMEM169 Missense_Mutation p.G111R 0.20 deleterious(0) probably_damaging(1) TCGA-3H-AB3T-01 2 238494711 238494711 G A RAB17 Silent p.S29S 0.19 TCGA-3H-AB3T-01 3 121417435 121417435 C T GOLGB1 Silent p.A645A 0.16 TCGA-3H-AB3T-01 3 124952476 124952476 G A ZNF148 Missense_Mutation p.A365V 0.19 deleterious(0.01) possibly_damaging(0.477) TCGA-3H-AB3T-01 3 133475847 133475847 G A TF Silent p.Q288Q 0.23 TCGA-3H-AB3T-01 3 14187365 14187365 G A XPC 3'UTR 0.25 TCGA-3H-AB3T-01 3 32022450 32022450 C T OSBPL10 Silent p.E74E 0.33 TCGA-3H-AB3T-01 3 36900342 36900342 G A TRANK1 Silent p.V469V 0.18 TCGA-3H-AB3T-01 3 52439862 52439862 C A BAP1 Nonsense_Mutation p.E284* 0.25 TCGA-3H-AB3T-01 3 9034638 9034638 G A SRGAP3 Missense_Mutation p.S837F 0.18 deleterious(0) probably_damaging(0.991) TCGA-3H-AB3T-01 5 131923749 131923749 A G RAD50 Missense_Mutation p.N340S 0.18 tolerated(0.15) benign(0.003) TCGA-3H-AB3T-01 5 54518080 54518080 G A MCIDAS Missense_Mutation p.P177L 0.15 deleterious(0.05) benign(0.394) TCGA-3H-AB3T-01 5 95733069 95733069 C T PCSK1 Missense_Mutation p.G565S 0.23 deleterious(0) probably_damaging(1) TCGA-3H-AB3T-01 6 150001110 150001110 C A LATS1 Missense_Mutation p.D832Y 0.43 deleterious(0) probably_damaging(1) TCGA-3H-AB3T-01 6 151125837 151125837 A T PLEKHG1 Missense_Mutation p.N291I 0.41 deleterious(0) probably_damaging(1) TCGA-3H-AB3T-01 6 15468917 15468917 G A JARID2 Missense_Mutation p.G213E 0.13 deleterious(0) possibly_damaging(0.743) TCGA-3H-AB3T-01 7 45145275 45145275 G C TBRG4 Missense_Mutation p.S167W 0.16 deleterious(0) probably_damaging(0.999) TCGA-3H-AB3T-01 8 124429131 124429131 C G WDYHV1 Silent p.A14A 0.23 TCGA-3H-AB3T-01 9 104125101 104125101 G A BAAT Missense_Mutation p.A289V 0.23 tolerated(0.3) benign(0.034) TCGA-3H-AB3T-01 X 41333180 41333180 G A NYX Silent p.L158L 0.53 TCGA-3H-AB3U-01 10 103558790 103558790 G A MGEA5 Missense_Mutation p.P540S 0.05 tolerated(0.25) possibly_damaging(0.89) TCGA-3H-AB3U-01 10 50944201 50944201 A G OGDHL Missense_Mutation p.L926P 0.35 deleterious(0) possibly_damaging(0.836) TCGA-3H-AB3U-01 11 10824594 10824594 G A EIF4G2 Missense_Mutation p.R327C 0.36 deleterious(0) possibly_damaging(0.796) TCGA-3H-AB3U-01 12 120615347 120615347 G C GCN1L1 Silent p.A247A 0.49 TCGA-3H-AB3U-01 13 32367082 32367082 C T RXFP2 Missense_Mutation p.A548V 0.49 tolerated(0.8) benign(0.002) TCGA-3H-AB3U-01 15 69708369 69708369 A G KIF23 Silent p.K16K 0.05 TCGA-3H-AB3U-01 16 2511180 2511180 C T C16orf59 Missense_Mutation p.S187F 0.26 tolerated(0.08) possibly_damaging(0.748) TCGA-3H-AB3U-01 16 28181110 28181110 G A XPO6 Silent p.L176L 0.48 TCGA-3H-AB3U-01 16 53501074 53501078 TGGAA - RBL2 Frame_Shift_Del p.G657Efs*11 0.24 TCGA-3H-AB3U-01 16 55527114 55527114 C G MMP2 Missense_Mutation p.L461V 0.55 tolerated(0.54) benign(0) TCGA-3H-AB3U-01 16 89263714 89263714 C T SLC22A31 Silent p.T452T 0.58 TCGA-3H-AB3U-01 16 89346228 89346228 G A ANKRD11 Missense_Mutation p.P2241L 0.60 benign(0.004) TCGA-3H-AB3U-01 17 39537313 39537313 C A KRT34 Nonsense_Mutation p.E237* 0.33 TCGA-3H-AB3U-01 17 73489050 73489050 C A KIAA0195 Missense_Mutation p.N651K 0.25 tolerated(0.17) benign(0.008) TCGA-3H-AB3U-01 17 78079636 78079636 A C GAA Missense_Mutation p.E212A 0.60 tolerated(0.14) benign(0.014) TCGA-3H-AB3U-01 19 54647469 54647469 G A CNOT3 Missense_Mutation p.R81H 0.40 deleterious(0) probably_damaging(0.998) TCGA-3H-AB3U-01 19 54966689 54966689 C T LENG8 Missense_Mutation p.A323V 0.37 deleterious(0.04) probably_damaging(0.999) TCGA-3H-AB3U-01 19 55574496 55574496 G C RDH13 5'UTR 0.32 TCGA-3H-AB3U-01 1 161161929 161161929 C A ADAMTS4 Missense_Mutation p.K671N 0.22 deleterious(0) probably_damaging(0.999) TCGA-3H-AB3U-01 1 32538513 32538513 G A TMEM39B 5'UTR 0.33 TCGA-3H-AB3U-01 1 32782336 32782336 C T HDAC1 Missense_Mutation p.S78F 0.43 deleterious(0.01) possibly_damaging(0.907) TCGA-3H-AB3U-01 1 70504077 70504077 T A LRRC7 Missense_Mutation p.V819D 0.38 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-3H-AB3U-01 20 16030493 16030493 C T MACROD2 Missense_Mutation p.A417V 0.22 tolerated_low_confidence(0.12) benign(0.024) TCGA-3H-AB3U-01 20 31024772 31024772 G A ASXL1 Silent p.K1419K 0.51 TCGA-3H-AB3U-01 3 47038049 47038049 C T NBEAL2 Nonsense_Mutation p.Q814* 0.69 TCGA-3H-AB3U-01 3 47125275 47125277 GCT C SETD2 Frame_Shift_Del p.Q1998Rfs*3 0.75 TCGA-3H-AB3U-01 3 52437899 52437908 TTCCCCTTAT - BAP1 Frame_Shift_Del p.Y418Wfs*9 0.73 TCGA-3H-AB3U-01 5 118274976 118274976 C G DTWD2 Missense_Mutation p.V107L 0.43 tolerated(0.13) benign(0.061) TCGA-3H-AB3U-01 6 35471606 35471606 G T TULP1 Missense_Mutation p.R378S 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-3H-AB3U-01 6 83767641 83767641 C G UBE3D Missense_Mutation p.E60Q 0.43 tolerated(0.18) possibly_damaging(0.876) TCGA-3H-AB3U-01 8 95444738 95444738 T A FSBP Missense_Mutation p.D174V 0.51 tolerated(0.12) benign(0.103) TCGA-3H-AB3X-01 10 49642992 49642992 A G MAPK8 Missense_Mutation p.M402V 0.34 tolerated_low_confidence(0.09) benign(0.002) TCGA-3H-AB3X-01 10 91087783 91087783 C T IFIT3 5'UTR 0.31 TCGA-3H-AB3X-01 11 56756569 56756569 T - OR5AK2 Frame_Shift_Del p.L63Yfs*29 0.38 TCGA-3H-AB3X-01 11 61404646 61404646 C A RPLP0P2 RNA 0.33 TCGA-3H-AB3X-01 12 51203292 51203292 G C ATF1 Missense_Mutation p.G83A 0.30 tolerated(0.3) benign(0.003) TCGA-3H-AB3X-01 12 57596990 57596990 T C LRP1 Missense_Mutation p.F3580L 0.07 possibly_damaging(0.871) TCGA-3H-AB3X-01 13 107148141 107148141 C G EFNB2 Missense_Mutation p.V152L 0.19 deleterious(0.01) possibly_damaging(0.786) TCGA-3H-AB3X-01 15 23811187 23811187 G A MKRN3 Silent p.P86P 0.33 TCGA-3H-AB3X-01 15 75336739 75336739 C T PPCDC Missense_Mutation p.R82C 0.06 deleterious(0.02) benign(0.168) TCGA-3H-AB3X-01 17 4623871 4623871 G A ARRB2 Intron 0.23 TCGA-3H-AB3X-01 19 19737802 19737802 G A LPAR2 Nonsense_Mutation p.R98* 0.31 TCGA-3H-AB3X-01 19 30934962 30934962 C A ZNF536 Missense_Mutation p.H165N 0.20 deleterious(0) probably_damaging(0.996) TCGA-3H-AB3X-01 1 151263675 151263675 G A ZNF687 Missense_Mutation p.G1235E 0.38 tolerated_low_confidence(0.05) possibly_damaging(0.849) TCGA-3H-AB3X-01 1 231474262 231474262 T G SPRTN Missense_Mutation p.L45V 0.15 tolerated(0.64) benign(0.116) TCGA-3H-AB3X-01 1 47746584 47746584 G A STIL Missense_Mutation p.P516S 0.35 tolerated(0.47) benign(0.01) TCGA-3H-AB3X-01 1 89733139 89733139 G A GBP5 Missense_Mutation p.T130I 0.36 deleterious(0.01) benign(0.403) TCGA-3H-AB3X-01 21 30419606 30419606 C T USP16 Missense_Mutation p.R659W 0.40 deleterious(0.02) probably_damaging(0.913) TCGA-3H-AB3X-01 2 20205732 20205732 G C MATN3 Missense_Mutation p.P188R 0.26 deleterious(0) probably_damaging(0.998) TCGA-3H-AB3X-01 2 36583415 36583415 A T CRIM1 5'UTR 0.44 TCGA-3H-AB3X-01 2 55761037 55761037 C T CCDC104 Silent p.G142G 0.34 TCGA-3H-AB3X-01 3 38355368 38355368 G A SLC22A14 Nonsense_Mutation p.W438* 0.21 TCGA-3H-AB3X-01 5 132161219 132161219 G A SHROOM1 Missense_Mutation p.A205V 0.36 tolerated(0.15) benign(0.053) TCGA-3H-AB3X-01 6 168708409 168708409 T G DACT2 Silent p.S676S 0.28 TCGA-3H-AB3X-01 8 23709754 23709754 C T STC1 Splice_Site p.X87_splice 0.34 TCGA-3H-AB3X-01 8 30704726 30704726 T C TEX15 Missense_Mutation p.Q603R 0.39 deleterious(0.03) benign(0.268) TCGA-3H-AB3X-01 8 77767345 77767375 TTTGATTACCCATCTTTGCCATTAACTAAAA - ZFHX4 Frame_Shift_Del p.F2730Lfs*29 0.36 TCGA-3H-AB3X-01 9 100850199 100850199 C T TRIM14 Silent p.L294L 0.36 TCGA-3H-AB3X-01 9 136259423 136259423 T A C9orf96 Missense_Mutation p.F197I 0.42 tolerated(0.39) benign(0.063) TCGA-3H-AB3X-01 9 21409244 21409244 C T IFNA8 Silent p.G23G 0.31 TCGA-3U-A98D-01 10 46961895 46961895 G A SYT15 3'Flank 0.35 TCGA-3U-A98D-01 11 17608102 17608102 C T OTOG Silent p.D959D 0.32 TCGA-3U-A98D-01 11 32456520 32456534 CGGCGCGGGGCCGCC - WT1 In_Frame_Del p.G120_P124del 0.41 TCGA-3U-A98D-01 11 56954904 56954904 G T LRRC55 Missense_Mutation p.A326S 0.35 deleterious(0.01) probably_damaging(0.994) TCGA-3U-A98D-01 11 7065101 7065101 T C NLRP14 Missense_Mutation p.L615S 0.28 deleterious(0) probably_damaging(0.999) TCGA-3U-A98D-01 11 75526420 75526420 C G UVRAG 5'UTR 0.37 TCGA-3U-A98D-01 12 113826503 113826503 G T PLBD2 3'UTR 0.20 TCGA-3U-A98D-01 12 54855958 54855958 T C GTSF1 Splice_Site p.X110_splice 0.06 TCGA-3U-A98D-01 12 6666684 6666684 T - NOP2 Frame_Shift_Del p.K671Nfs*13 0.27 TCGA-3U-A98D-01 15 44958005 44958005 A C PATL2 3'UTR 0.41 TCGA-3U-A98D-01 16 67576527 67576547 CAAGCCCCACTCATACTTCCA - FAM65A In_Frame_Del p.S639_T645del 0.17 TCGA-3U-A98D-01 17 48540842 48540842 C T ACSF2 Silent p.Y325Y 0.29 TCGA-3U-A98D-01 19 1154339 1154339 C T SBNO2 5'UTR 0.33 TCGA-3U-A98D-01 19 3938740 3938740 C G NMRK2 Missense_Mutation p.F102L 0.31 deleterious(0.01) benign(0.06) TCGA-3U-A98D-01 19 46995443 46995443 C T PNMAL2 3'UTR 0.25 TCGA-3U-A98D-01 1 151337149 151337149 T A SELENBP1 Missense_Mutation p.D430V 0.28 deleterious(0) possibly_damaging(0.883) TCGA-3U-A98D-01 1 171501552 171501552 A T PRRC2C Missense_Mutation p.D440V 0.46 unknown(0) TCGA-3U-A98D-01 1 27683933 27683940 CCCAAGGC - MAP3K6 Frame_Shift_Del p.G1070Afs*65 0.10 TCGA-3U-A98D-01 1 3747619 3747619 G A CEP104 Silent p.N609N 0.37 TCGA-3U-A98D-01 20 30432938 30432938 C T FOXS1 Silent p.A136A 0.32 TCGA-3U-A98D-01 20 31413850 31413850 C A MAPRE1 Nonsense_Mutation p.C39* 0.32 TCGA-3U-A98D-01 20 57598900 57598900 G A TUBB1 Missense_Mutation p.G140S 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-3U-A98D-01 21 46021524 46021524 G A KRTAP10-7 Missense_Mutation p.A335T 0.10 deleterious(0.02) unknown(0) TCGA-3U-A98D-01 22 39826189 39826189 G A TAB1 Missense_Mutation p.V493M 0.06 tolerated_low_confidence(0.23) benign(0.002) TCGA-3U-A98D-01 2 167055445 167055445 G A SCN9A Missense_Mutation p.R1891C 0.20 tolerated(0.13) benign(0.003) TCGA-3U-A98D-01 2 17699123 17699123 T C RAD51AP2 Missense_Mutation p.H187R 0.33 tolerated(0.42) benign(0.002) TCGA-3U-A98D-01 2 179408072 179408072 C T TTN Missense_Mutation p.E32210K 0.07 TCGA-3U-A98D-01 2 202631991 202631991 C A ALS2 Missense_Mutation p.A46S 0.09 deleterious(0.01) probably_damaging(0.947) TCGA-3U-A98D-01 2 27663295 27663295 G A NRBP1 Silent p.E354E 0.52 TCGA-3U-A98D-01 2 48010539 48010539 G A MSH6 Missense_Mutation p.G56E 0.63 tolerated(0.27) benign(0.004) TCGA-3U-A98D-01 3 167000222 167000222 G T ZBBX Missense_Mutation p.S686R 0.54 tolerated(0.15) benign(0.022) TCGA-3U-A98D-01 3 174814892 174814892 G A NAALADL2 Missense_Mutation p.R119H 0.58 tolerated(0.19) benign(0.003) TCGA-3U-A98D-01 3 57368866 57368866 G A DNAH12 Silent p.D24D 0.36 TCGA-3U-A98D-01 4 177241173 177241173 C T SPCS3 5'UTR 0.45 TCGA-3U-A98D-01 4 44692779 44692779 C T GUF1 Missense_Mutation p.P461S 0.39 deleterious(0) probably_damaging(0.999) TCGA-3U-A98D-01 4 70592818 70592818 G A SULT1B1 Silent p.R293R 0.35 TCGA-3U-A98D-01 5 26881400 26881400 C A CDH9 Missense_Mutation p.A739S 0.05 deleterious(0.01) probably_damaging(0.996) TCGA-3U-A98D-01 6 123377097 123377097 C T CLVS2 Silent p.S274S 0.56 TCGA-3U-A98D-01 6 161653147 161653147 G A AGPAT4 Silent p.L33L 0.23 TCGA-3U-A98D-01 6 31431902 31431902 C G HCP5 RNA 0.27 TCGA-3U-A98D-01 6 43501700 43501700 G A XPO5 Missense_Mutation p.A796V 0.24 tolerated(0.15) benign(0.001) TCGA-3U-A98D-01 6 70744174 70744174 G T COL19A1 Missense_Mutation p.G373V 0.41 deleterious(0) unknown(0) TCGA-3U-A98D-01 7 135377111 135377111 C T SLC13A4 Missense_Mutation p.E394K 0.29 deleterious(0.02) probably_damaging(0.988) TCGA-3U-A98D-01 7 143018942 143018942 G A CLCN1 Splice_Site p.X232_splice 0.26 TCGA-3U-A98D-01 7 36571774 36571774 C T AOAH Silent p.T468T 0.32 TCGA-3U-A98D-01 7 76141172 76141172 C T UPK3B Missense_Mutation p.A200V 0.29 deleterious_low_confidence(0.04) benign(0.297) TCGA-3U-A98D-01 7 97920549 97920549 C T BRI3 Silent p.F124F 0.29 TCGA-3U-A98D-01 8 25258552 25258552 A G DOCK5 Silent p.K1632K 0.42 TCGA-3U-A98D-01 8 90937632 90937632 C T OSGIN2 Missense_Mutation p.P508S 0.34 deleterious(0.02) probably_damaging(1) TCGA-3U-A98D-01 9 6013345 6013345 G A RANBP6 Nonsense_Mutation p.Q755* 0.39 TCGA-3U-A98D-01 9 99329074 99329074 C A CDC14B Intron 0.29 TCGA-3U-A98E-01 10 118404624 118404624 A G PNLIPRP2 3'UTR 0.39 TCGA-3U-A98E-01 10 29710634 29710634 T C PTCHD3P1 RNA 0.33 TCGA-3U-A98E-01 10 75435240 75435240 G A AGAP5 Missense_Mutation p.P393L 0.15 deleterious(0.01) possibly_damaging(0.833) TCGA-3U-A98E-01 10 97752383 97752383 C T ENTPD1-AS1 Intron 0.31 TCGA-3U-A98E-01 11 111959714 111959714 C A SDHD Missense_Mutation p.A98D 0.35 deleterious(0.01) probably_damaging(0.982) TCGA-3U-A98E-01 11 130784264 130784264 G A SNX19 Missense_Mutation p.P524L 0.35 tolerated(0.05) possibly_damaging(0.878) TCGA-3U-A98E-01 11 32852164 32852164 A T PRRG4 Missense_Mutation p.H30L 0.26 tolerated(0.15) benign(0.062) TCGA-3U-A98E-01 11 5363910 5363910 G C OR51B5 Missense_Mutation p.P282R 0.34 deleterious(0) probably_damaging(0.997) TCGA-3U-A98E-01 11 55761632 55761632 A T OR5F1 Missense_Mutation p.M157K 0.22 deleterious(0.02) benign(0.038) TCGA-3U-A98E-01 11 57175170 57175170 C G SLC43A3 3'UTR 0.18 TCGA-3U-A98E-01 12 52409091 52409091 G A GRASP 3'UTR 0.25 TCGA-3U-A98E-01 12 89918315 89918315 C T GALNT4 Silent p.R4R 0.31 TCGA-3U-A98E-01 13 101763532 101763532 C T NALCN Silent p.Q746Q 0.81 TCGA-3U-A98E-01 13 21562133 21562142 TCTTGATGCG - LATS2 Frame_Shift_Del p.R593Afs*63 0.75 TCGA-3U-A98E-01 15 63054565 63054565 A G TLN2 Missense_Mutation p.N1625S 0.36 tolerated(0.38) benign(0.038) TCGA-3U-A98E-01 15 90347820 90347820 A G ANPEP Missense_Mutation p.I309T 0.50 tolerated(0.16) benign(0.073) TCGA-3U-A98E-01 16 1357517 1357517 G C UBE2I 5'Flank 0.33 TCGA-3U-A98E-01 17 53045668 53045668 C T COX11 Missense_Mutation p.V114I 0.43 tolerated(0.05) probably_damaging(0.954) TCGA-3U-A98E-01 17 56329798 56329798 T - LPO Frame_Shift_Del p.Y346Mfs*52 0.31 TCGA-3U-A98E-01 17 7249731 7249731 G C ACAP1 Missense_Mutation p.D310H 0.33 deleterious(0) probably_damaging(0.982) TCGA-3U-A98E-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.36 TCGA-3U-A98E-01 19 47646749 47646749 A C SAE1 Splice_Site p.X33_splice 0.35 TCGA-3U-A98E-01 19 54074859 54074859 G A ZNF331 Missense_Mutation p.G4D 0.36 tolerated(0.24) probably_damaging(0.992) TCGA-3U-A98E-01 1 155161992 155161992 G C MUC1 Missense_Mutation p.S47R 0.38 tolerated_low_confidence(0.11) probably_damaging(0.942) TCGA-3U-A98E-01 1 155429684 155429684 G A ASH1L Nonsense_Mutation p.Q1664* 0.39 TCGA-3U-A98E-01 22 21989962 21989962 G A CCDC116 Intron 0.47 TCGA-3U-A98E-01 2 160092694 160092694 A G WDSUB1 Silent p.Y427Y 0.28 TCGA-3U-A98E-01 2 179447858 179447858 G A TTN Missense_Mutation p.P21891L 0.36 TCGA-3U-A98E-01 2 219028889 219028889 T C CXCR1 Missense_Mutation p.N349S 0.39 deleterious(0.05) unknown(0) TCGA-3U-A98E-01 2 233899456 233899456 A G NEU2 Missense_Mutation p.S278G 0.30 tolerated(0.88) benign(0.012) TCGA-3U-A98E-01 2 39250042 39250042 T A SOS1 Missense_Mutation p.E509D 0.24 tolerated(0.4) benign(0.005) TCGA-3U-A98E-01 2 65544006 65544006 G A SPRED2 Silent p.D150D 0.35 TCGA-3U-A98E-01 3 130360515 130360515 G C COL6A6 Missense_Mutation p.G1704A 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-3U-A98E-01 3 50253028 50253028 G T SLC38A3 RNA 0.63 TCGA-3U-A98E-01 4 48152881 48152881 C A TEC Nonsense_Mutation p.G291* 0.09 TCGA-3U-A98E-01 5 176304588 176304588 C T UNC5A Missense_Mutation p.P507S 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-3U-A98E-01 6 149903638 149903638 C T GINM1 Silent p.F260F 0.47 TCGA-3U-A98E-01 6 26217522 26217522 G A HIST1H2AE Missense_Mutation p.G107D 0.57 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-3U-A98E-01 6 36742738 36742738 C T CPNE5 Missense_Mutation p.R246Q 0.07 deleterious(0.04) probably_damaging(0.999) TCGA-3U-A98E-01 7 6026637 6026637 T A PMS2 Missense_Mutation p.S587C 0.43 deleterious(0.04) benign(0.195) TCGA-3U-A98E-01 7 6370465 6370465 G A FAM220A Silent p.F107F 0.35 TCGA-3U-A98E-01 7 75915291 75915291 G A SRRM3 3'UTR 0.29 TCGA-3U-A98E-01 8 133584698 133584698 G T LRRC6 Missense_Mutation p.D419E 0.31 tolerated(0.05) possibly_damaging(0.566) TCGA-3U-A98E-01 8 86574511 86574511 G A REXO1L1P Missense_Mutation p.P406S 0.11 tolerated(0.11) benign(0.082) TCGA-3U-A98E-01 X 37955401 37955401 G C SYTL5 Missense_Mutation p.E326Q 0.14 tolerated(0.1) probably_damaging(0.946) TCGA-3U-A98E-01 X 74376029 74376029 G A ABCB7 Silent p.L27L 0.58 TCGA-3U-A98F-01 10 106401240 106401240 G T SORCS3 Missense_Mutation p.R52L 0.52 tolerated_low_confidence(0.12) benign(0.007) TCGA-3U-A98F-01 11 119063944 119063944 C G CCDC153 Missense_Mutation p.R89P 0.14 deleterious(0.01) probably_damaging(0.969) TCGA-3U-A98F-01 11 15133994 15133994 C T INSC 5'UTR 0.49 TCGA-3U-A98F-01 11 15260527 15260527 G A INSC Missense_Mutation p.A481T 0.40 tolerated(0.07) benign(0.109) TCGA-3U-A98F-01 11 34953017 34953017 G T PDHX Missense_Mutation p.W76L 0.33 deleterious(0) probably_damaging(0.996) TCGA-3U-A98F-01 11 55038208 55038208 C T TRIM48 3'UTR 0.53 TCGA-3U-A98F-01 11 78443486 78443486 C A TENM4 Nonsense_Mutation p.E1005* 0.51 TCGA-3U-A98F-01 12 52984665 52984665 G A KRT72 Silent p.R348R 0.72 TCGA-3U-A98F-01 12 56661500 56661500 C T COQ10A Intron 0.54 TCGA-3U-A98F-01 15 101825212 101825213 - T SNRPA1 Frame_Shift_Ins p.L224Afs*17 0.24 TCGA-3U-A98F-01 15 35261767 35261770 GGAC - AQR Frame_Shift_Del p.S16Kfs*7 0.50 TCGA-3U-A98F-01 15 51693900 51693900 T C GLDN Missense_Mutation p.S380P 0.29 deleterious(0.03) possibly_damaging(0.824) TCGA-3U-A98F-01 15 85402558 85402558 T A ALPK3 Missense_Mutation p.I1503N 0.53 deleterious(0) probably_damaging(0.983) TCGA-3U-A98F-01 16 88503246 88503246 G A ZNF469 Missense_Mutation p.R3095H 0.57 probably_damaging(0.998) TCGA-3U-A98F-01 17 26960332 26960332 C A KIAA0100 Missense_Mutation p.D1185Y 0.43 deleterious(0) probably_damaging(0.954) TCGA-3U-A98F-01 17 38574035 38574035 C T TOP2A Silent p.V3V 0.56 TCGA-3U-A98F-01 17 76993317 76993317 T C CANT1 Missense_Mutation p.K130E 0.41 deleterious(0.04) benign(0.351) TCGA-3U-A98F-01 18 32954011 32954011 C A ZNF396 Missense_Mutation p.R82S 0.40 deleterious(0) possibly_damaging(0.765) TCGA-3U-A98F-01 19 15996756 15996756 G A CYP4F2 Missense_Mutation p.R365C 0.37 deleterious(0.01) benign(0.431) TCGA-3U-A98F-01 19 49481393 49481393 C T GYS1 Silent p.K397K 0.68 TCGA-3U-A98F-01 19 55689711 55689711 G A SYT5 Silent p.I35I 0.29 TCGA-3U-A98F-01 19 56369355 56369355 C T NLRP4 Missense_Mutation p.T199M 0.17 tolerated(0.06) benign(0.18) TCGA-3U-A98F-01 19 9204019 9204019 C T OR1M1 Silent p.C33C 0.62 TCGA-3U-A98F-01 1 150300922 150300922 C G PRPF3 Silent p.L140L 0.24 TCGA-3U-A98F-01 1 207286433 207286433 C A C4BPA Silent p.P21P 0.42 TCGA-3U-A98F-01 1 27217268 27217268 G C GPATCH3 3'UTR 0.88 TCGA-3U-A98F-01 1 45267347 45267347 C G PLK3 Silent p.R163R 0.84 TCGA-3U-A98F-01 20 42340152 42340152 G A MYBL2 Missense_Mutation p.D544N 0.50 deleterious(0) probably_damaging(1) TCGA-3U-A98F-01 20 61951543 61951543 G A COL20A1 Silent p.S1023S 0.41 TCGA-3U-A98F-01 22 29704406 29704419 CCACCTTCATCGGC G GAS2L1 Frame_Shift_Del p.A104Gfs*93 0.69 TCGA-3U-A98F-01 22 29704419 29704419 C G GAS2L1 Silent p.G108G 0.59 TCGA-3U-A98F-01 22 30064436 30064436 G T NF2 Splice_Site p.X333_splice 0.83 TCGA-3U-A98F-01 22 45937161 45937161 C A FBLN1 Nonsense_Mutation p.C325* 0.89 TCGA-3U-A98F-01 2 108626918 108626918 T C SLC5A7 Silent p.T448T 0.50 TCGA-3U-A98F-01 2 132250495 132250495 C G MZT2A 5'Flank 0.49 TCGA-3U-A98F-01 2 135012159 135012159 C A MGAT5 Missense_Mutation p.A62E 0.50 deleterious(0) probably_damaging(0.951) TCGA-3U-A98F-01 2 153473607 153473607 A T FMNL2 Missense_Mutation p.L405F 0.32 probably_damaging(0.947) TCGA-3U-A98F-01 2 172965412 172965412 C G DLX2 Missense_Mutation p.W282C 0.44 deleterious(0) possibly_damaging(0.893) TCGA-3U-A98F-01 2 191383867 191383867 C A TMEM194B Missense_Mutation p.A86S 0.09 tolerated(0.38) benign(0) TCGA-3U-A98F-01 2 1946835 1946835 C A MYT1L Missense_Mutation p.D142Y 0.45 deleterious(0.03) unknown(0) TCGA-3U-A98F-01 2 230632265 230632265 T C TRIP12 3'UTR 0.46 TCGA-3U-A98F-01 2 239112224 239112224 G A ILKAP 5'UTR 0.55 TCGA-3U-A98F-01 3 186358202 186358202 C T FETUB 5'UTR 0.76 TCGA-3U-A98F-01 3 36898531 36898531 G A TRANK1 Silent p.D850D 0.77 TCGA-3U-A98F-01 3 73016763 73016763 T G GXYLT2 Missense_Mutation p.C348G 0.15 deleterious(0) probably_damaging(0.997) TCGA-3U-A98F-01 4 128865069 128865069 T C MFSD8 Missense_Mutation p.I93V 0.86 tolerated(0.14) benign(0.004) TCGA-3U-A98F-01 5 134033665 134033665 A G SEC24A Silent p.V728V 0.23 TCGA-3U-A98F-01 5 6604798 6604798 C - NSUN2 Frame_Shift_Del p.V580Lfs*52 0.27 TCGA-3U-A98F-01 5 80363881 80363881 A G RASGRF2 Silent p.V142V 0.40 TCGA-3U-A98F-01 5 83476262 83476262 C G EDIL3 Missense_Mutation p.G102R 0.53 deleterious(0.03) probably_damaging(1) TCGA-3U-A98F-01 5 89923278 89923278 C A GPR98 Missense_Mutation p.T308K 0.55 benign(0.002) TCGA-3U-A98F-01 7 100373293 100373293 C T ZAN Silent p.I2009I 0.19 TCGA-3U-A98F-01 8 22548122 22548122 G T EGR3 Missense_Mutation p.A343E 0.43 deleterious(0) probably_damaging(1) TCGA-3U-A98F-01 8 2815268 2815268 C T CSMD1 Missense_Mutation p.R3255H 0.42 probably_damaging(0.999) TCGA-3U-A98F-01 9 136337148 136337148 G T SLC2A6 Missense_Mutation p.R507S 0.42 deleterious_low_confidence(0.01) benign(0.131) TCGA-3U-A98F-01 9 35403183 35403183 T G UNC13B Silent p.P1419P 0.35 TCGA-3U-A98G-01 11 46369154 46369154 G C DGKZ 5'UTR 0.30 TCGA-3U-A98G-01 17 39681496 39681496 C A KRT19 Missense_Mutation p.R150S 0.08 tolerated(0.24) benign(0.257) TCGA-3U-A98G-01 2 74489351 74489351 G C SLC4A5 Missense_Mutation p.P242A 0.05 tolerated(0.41) benign(0.009) TCGA-3U-A98H-01 10 1081802 1081803 - TGGCCCACCG IDI1 3'Flank 0.16 TCGA-3U-A98H-01 10 76790802 76790802 T C KAT6B Nonstop_Mutation p.*2074Qext*16 0.20 TCGA-3U-A98H-01 11 124740918 124740918 C A ROBO3 Missense_Mutation p.Q348K 0.09 tolerated(0.07) benign(0.014) TCGA-3U-A98H-01 11 59224921 59224921 T C OR4D6 Missense_Mutation p.M163T 0.12 tolerated(0.89) benign(0.122) TCGA-3U-A98H-01 14 24439356 24439356 G T DHRS4 3'Flank 0.11 TCGA-3U-A98H-01 17 54976516 54976516 C T TRIM25 Silent p.A371A 0.17 TCGA-3U-A98H-01 19 14001054 14001054 C T C19orf57 Silent p.Q205Q 0.19 TCGA-3U-A98H-01 1 163131703 163131703 A T RGS5 Splice_Site p.X73_splice 0.15 TCGA-3U-A98H-01 1 22148792 22148792 C G LDLRAD2 3'UTR 0.23 TCGA-3U-A98H-01 1 227921685 227921685 G A JMJD4 Silent p.S205S 0.26 TCGA-3U-A98H-01 1 231557029 231557029 C T EGLN1 Missense_Mutation p.M202I 0.14 deleterious(0.02) benign(0.114) TCGA-3U-A98H-01 1 28832551 28832551 C T SNORA73B 5'Flank 0.16 TCGA-3U-A98H-01 22 30051617 30051617 G A NF2 Nonsense_Mutation p.W184* 0.20 TCGA-3U-A98H-01 22 38958356 38958356 C A DMC1 Missense_Mutation p.A88S 0.29 deleterious(0.01) possibly_damaging(0.458) TCGA-3U-A98H-01 22 50728785 50728786 - CTTG PLXNB2 Frame_Shift_Ins p.K77Qfs*14 0.21 TCGA-3U-A98H-01 2 191745972 191745972 C T GLS Silent p.L54L 0.15 TCGA-3U-A98H-01 3 47162267 47162267 G A SETD2 Nonsense_Mutation p.Q1287* 0.20 TCGA-3U-A98H-01 3 52441265 52441265 G - BAP1 Frame_Shift_Del p.H169Tfs*18 0.20 TCGA-3U-A98H-01 4 110415871 110415877 CCCTCAG - SEC24B Frame_Shift_Del p.P450Lfs*50 0.25 TCGA-3U-A98H-01 6 151670941 151670941 C T AKAP12 Missense_Mutation p.S472F 0.28 tolerated(0.06) benign(0.069) TCGA-3U-A98H-01 6 152719796 152719796 G T SYNE1 Silent p.T2436T 0.15 TCGA-3U-A98H-01 6 36106222 36106222 G T MAPK13 Splice_Site p.X254_splice 0.15 TCGA-3U-A98H-01 7 139737576 139737576 G A PARP12 Silent p.D421D 0.30 TCGA-3U-A98H-01 X 39933138 39933139 - A BCOR Frame_Shift_Ins p.S488Ifs*11 0.30 TCGA-3U-A98I-01 10 47000164 47000164 G A GPRIN2 Silent p.L428L 0.12 TCGA-3U-A98I-01 11 14535237 14535237 G A PSMA1 Silent p.G147G 0.26 TCGA-3U-A98I-01 11 63486347 63486347 C G RTN3 Missense_Mutation p.L125V 0.28 deleterious(0.01) benign(0.285) TCGA-3U-A98I-01 11 63986803 63986803 G A FERMT3 Silent p.E289E 0.23 TCGA-3U-A98I-01 12 100444023 100444023 C T UHRF1BP1L Missense_Mutation p.C1214Y 0.24 tolerated(0.07) probably_damaging(0.947) TCGA-3U-A98I-01 12 132539703 132539703 C T EP400 Nonsense_Mutation p.Q2612* 0.20 TCGA-3U-A98I-01 12 51451827 51451827 C T LETMD1 Missense_Mutation p.R323C 0.30 deleterious(0) probably_damaging(1) TCGA-3U-A98I-01 12 57003695 57003695 G C BAZ2A Missense_Mutation p.I641M 0.29 deleterious(0) probably_damaging(0.996) TCGA-3U-A98I-01 12 65270596 65270596 C T TBC1D30 3'Flank 0.21 TCGA-3U-A98I-01 12 662445 662445 G T B4GALNT3 Missense_Mutation p.M452I 0.24 tolerated(0.44) benign(0.002) TCGA-3U-A98I-01 13 48651272 48651272 T A MED4 3'UTR 0.27 TCGA-3U-A98I-01 14 69995078 69995078 A T PLEKHD1 Missense_Mutation p.Y488F 0.25 tolerated_low_confidence(0.08) benign(0.024) TCGA-3U-A98I-01 15 28263649 28263649 C A OCA2 Missense_Mutation p.G234V 0.23 deleterious(0) probably_damaging(1) TCGA-3U-A98I-01 15 62360535 62360535 C T C2CD4A Silent p.R241R 0.22 TCGA-3U-A98I-01 16 68597755 68597755 A T ZFP90 Missense_Mutation p.Q355H 0.22 deleterious(0.03) probably_damaging(0.994) TCGA-3U-A98I-01 16 75203443 75203443 G A ZFP1 Silent p.K145K 0.30 TCGA-3U-A98I-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.38 deleterious(0) probably_damaging(0.998) TCGA-3U-A98I-01 17 76433837 76433837 G C DNAH17 Missense_Mutation p.S3967R 0.40 benign(0.138) TCGA-3U-A98I-01 18 56033349 56033358 AGTTTGAATC - NEDD4L Frame_Shift_Del p.F652Rfs*73 0.33 TCGA-3U-A98I-01 19 43015772 43015772 T A CEACAM1 Missense_Mutation p.D462V 0.61 deleterious(0.05) benign(0.247) TCGA-3U-A98I-01 19 49671835 49671835 G A TRPM4 Nonsense_Mutation p.W213* 0.17 TCGA-3U-A98I-01 19 58598325 58598325 G A ZSCAN18 Silent p.H287H 0.21 TCGA-3U-A98I-01 19 9801683 9801683 T G ZNF812 Missense_Mutation p.K166Q 0.07 tolerated(0.16) probably_damaging(0.999) TCGA-3U-A98I-01 19 9875607 9875607 C A ZNF846 Intron 0.06 TCGA-3U-A98I-01 1 110254970 110254970 G C GSTM5 Silent p.G12G 0.25 TCGA-3U-A98I-01 1 152759979 152759979 C T LCE1E Silent p.C68C 0.20 TCGA-3U-A98I-01 1 155221368 155221368 G C FAM189B Missense_Mutation p.D273E 0.34 tolerated(0.57) probably_damaging(0.978) TCGA-3U-A98I-01 1 216052322 216052322 G T USH2A Missense_Mutation p.T2781N 0.11 benign(0.378) TCGA-3U-A98I-01 1 26488341 26488341 C T FAM110D Nonsense_Mutation p.Q187* 0.25 TCGA-3U-A98I-01 1 32157034 32157034 C A COL16A1 Missense_Mutation p.G461V 0.20 unknown(0) TCGA-3U-A98I-01 20 62200731 62200731 G C HELZ2 Silent p.G286G 0.20 TCGA-3U-A98I-01 22 24037227 24037227 T C RGL4 Intron 0.34 TCGA-3U-A98I-01 2 185801700 185801700 T A ZNF804A Missense_Mutation p.L526H 0.27 deleterious(0.04) benign(0.007) TCGA-3U-A98I-01 2 201736179 201736179 C G PPIL3 Missense_Mutation p.R146P 0.19 deleterious(0.02) possibly_damaging(0.874) TCGA-3U-A98I-01 2 220045446 220045446 G A FAM134A Missense_Mutation p.V204I 0.23 tolerated(0.52) benign(0.164) TCGA-3U-A98I-01 2 233347298 233347298 G A ECEL1 Missense_Mutation p.A569V 0.20 tolerated(0.06) possibly_damaging(0.64) TCGA-3U-A98I-01 2 54858064 54858064 C T SPTBN1 Silent p.Y960Y 0.17 TCGA-3U-A98I-01 2 70315574 70315574 C T PCBP1 Silent p.L233L 0.33 TCGA-3U-A98I-01 3 140692598 140692598 C A SLC25A36 Missense_Mutation p.R165S 0.08 tolerated(0.11) benign(0.047) TCGA-3U-A98I-01 3 168845793 168845793 T C MECOM Silent p.E99E 0.27 TCGA-3U-A98I-01 3 169540152 169540152 G C LRRIQ4 Missense_Mutation p.G148A 0.23 deleterious(0) probably_damaging(0.999) TCGA-3U-A98I-01 3 38149903 38149903 G A DLEC1 Missense_Mutation p.G1009E 0.09 deleterious(0) probably_damaging(0.999) TCGA-3U-A98I-01 3 7503369 7503369 A T GRM7 Missense_Mutation p.Y492F 0.21 deleterious(0.01) benign(0.354) TCGA-3U-A98I-01 4 40946968 40946968 G A APBB2 Missense_Mutation p.R320W 0.32 deleterious(0.02) probably_damaging(0.975) TCGA-3U-A98I-01 5 169143268 169143268 C T DOCK2 Nonsense_Mutation p.Q665* 0.19 TCGA-3U-A98I-01 5 35065260 35065260 G A PRLR Silent p.S600S 0.22 TCGA-3U-A98I-01 6 158922976 158922976 G A TULP4 Missense_Mutation p.V761M 0.29 tolerated_low_confidence(0.14) benign(0.01) TCGA-3U-A98I-01 6 7576670 7576670 G A DSP Missense_Mutation p.R925Q 0.31 benign(0.202) TCGA-3U-A98I-01 8 104427719 104427719 C G DCAF13 Silent p.R167R 0.24 TCGA-3U-A98I-01 8 144893114 144893114 G A SCRIB Missense_Mutation p.T412I 0.22 probably_damaging(0.999) TCGA-3U-A98I-01 8 27779396 27779396 G A SCARA5 Missense_Mutation p.A203V 0.20 tolerated(0.3) benign(0.002) TCGA-3U-A98I-01 8 77768488 77768488 G A ZFHX4 Missense_Mutation p.G3111R 0.17 probably_damaging(0.999) TCGA-3U-A98I-01 8 82714642 82714642 T A SNX16 Missense_Mutation p.D304V 0.28 deleterious(0) possibly_damaging(0.774) TCGA-3U-A98I-01 8 97621763 97621763 A - SDC2 Frame_Shift_Del p.E198Gfs*9 0.13 TCGA-3U-A98I-01 9 140127522 140127522 C G SLC34A3 Missense_Mutation p.T172S 0.22 deleterious(0.01) benign(0.033) TCGA-3U-A98I-01 X 104984616 104984616 C A IL1RAPL2 Missense_Mutation p.A327E 0.48 tolerated(0.14) possibly_damaging(0.745) TCGA-3U-A98J-01 10 103869381 103869381 G - LDB1 Frame_Shift_Del p.N237Ifs*11 0.14 TCGA-3U-A98J-01 10 48388847 48388847 C T RBP3 Silent p.V677V 0.08 TCGA-3U-A98J-01 11 284484 284484 G T NLRP6 Silent p.L794L 0.29 TCGA-3U-A98J-01 11 36614801 36614801 A G RAG2 Silent p.D306D 0.26 TCGA-3U-A98J-01 11 407446 407446 G A SIGIRR Missense_Mutation p.R202C 0.16 deleterious(0.01) probably_damaging(0.959) TCGA-3U-A98J-01 11 46419215 46419215 G C AMBRA1 Missense_Mutation p.P1138A 0.22 deleterious_low_confidence(0.01) benign(0.05) TCGA-3U-A98J-01 11 62290700 62290700 C T AHNAK Missense_Mutation p.G3730E 0.09 probably_damaging(0.997) TCGA-3U-A98J-01 11 65271754 65271755 - G MALAT1 RNA 0.20 TCGA-3U-A98J-01 11 6891585 6891585 G T OR10A2 Silent p.L200L 0.26 TCGA-3U-A98J-01 14 38149390 38149390 C G TTC6 Missense_Mutation p.T325R 0.17 tolerated_low_confidence(0.13) benign(0.001) TCGA-3U-A98J-01 16 69951761 69951761 A T WWP2 Missense_Mutation p.H385L 0.22 deleterious(0.01) benign(0.031) TCGA-3U-A98J-01 17 16725699 16725699 G A AC022596.6 RNA 0.25 TCGA-3U-A98J-01 17 40257972 40257972 C T DHX58 Missense_Mutation p.G345S 0.32 tolerated(0.63) benign(0.002) TCGA-3U-A98J-01 17 46136755 46136755 C T NFE2L1 Missense_Mutation p.R691C 0.26 deleterious(0) probably_damaging(0.913) TCGA-3U-A98J-01 18 11876625 11876625 C A GNAL Missense_Mutation p.P390T 0.24 deleterious(0.05) probably_damaging(0.966) TCGA-3U-A98J-01 1 155920693 155920693 C T ARHGEF2 Missense_Mutation p.R877H 0.38 tolerated_low_confidence(0.09) probably_damaging(0.992) TCGA-3U-A98J-01 1 17668876 17668876 C T PADI4 Missense_Mutation p.P305L 0.30 deleterious(0) probably_damaging(0.967) TCGA-3U-A98J-01 1 186925447 186925447 A T PLA2G4A Missense_Mutation p.D517V 0.15 tolerated(0.08) benign(0.063) TCGA-3U-A98J-01 1 240351536 240351536 C A FMN2 Missense_Mutation p.Q654K 0.10 unknown(0) TCGA-3U-A98J-01 1 95392591 95392591 G C CNN3 5'UTR 0.35 TCGA-3U-A98J-01 20 2083961 2083961 G A STK35 Missense_Mutation p.G281D 0.16 deleterious(0.05) benign(0.444) TCGA-3U-A98J-01 3 47823535 47823535 C T SMARCC1 5'Flank 0.26 TCGA-3U-A98J-01 4 114280386 114280386 A G ANK2 Missense_Mutation p.I3538V 0.26 probably_damaging(0.997) TCGA-3U-A98J-01 4 114682328 114682328 C T CAMK2D 5'Flank 0.35 TCGA-3U-A98J-01 5 140595771 140595771 G A PCDHB13 Silent p.V692V 0.36 TCGA-3U-A98J-01 7 101063361 101063361 C T COL26A1 Missense_Mutation p.P88S 0.23 tolerated(0.06) possibly_damaging(0.809) TCGA-3U-A98J-01 9 131454159 131454159 G A SET Missense_Mutation p.E65K 0.41 deleterious(0.01) possibly_damaging(0.831) TCGA-3U-A98J-01 9 23705059 23705059 G T ELAVL2 Missense_Mutation p.A115D 0.16 deleterious(0) probably_damaging(0.999) TCGA-3U-A98J-01 X 129759294 129759294 C T ENOX2 Silent p.L609L 0.42 TCGA-3U-A98J-01 X 70349994 70349994 A C MED12 Missense_Mutation p.Y1326S 0.69 probably_damaging(0.968) TCGA-LK-A4NW-01 10 35928212 35928212 C T FZD8 3'UTR 0.50 TCGA-LK-A4NW-01 10 5952932 5952932 T C FBXO18 Missense_Mutation p.V402A 0.18 deleterious(0) benign(0.039) TCGA-LK-A4NW-01 11 5364325 5364325 G A OR51B5 Silent p.L144L 0.21 TCGA-LK-A4NW-01 11 6265600 6265600 G A CNGA4 Silent p.E563E 0.24 TCGA-LK-A4NW-01 12 110937305 110937305 A G VPS29 Intron 0.19 TCGA-LK-A4NW-01 12 121878723 121878723 C A KDM2B Missense_Mutation p.S1169I 0.24 deleterious(0.01) benign(0.393) TCGA-LK-A4NW-01 12 12482960 12482960 C T MANSC1 3'UTR 0.19 TCGA-LK-A4NW-01 12 64823865 64823865 C T XPOT Nonsense_Mutation p.Q592* 0.10 TCGA-LK-A4NW-01 12 7351660 7351660 G T PEX5 Nonsense_Mutation p.E183* 0.09 TCGA-LK-A4NW-01 16 27374786 27374786 G C IL4R Missense_Mutation p.D705H 0.20 deleterious(0.01) probably_damaging(0.987) TCGA-LK-A4NW-01 16 57608968 57608968 C T GPR114 Nonsense_Mutation p.Q484* 0.31 TCGA-LK-A4NW-01 16 66968288 66968288 T C FAM96B 5'UTR 0.29 TCGA-LK-A4NW-01 17 17119693 17119693 C T FLCN Splice_Site p.X434_splice 0.45 TCGA-LK-A4NW-01 17 65124958 65124958 G A HELZ Missense_Mutation p.R1066W 0.18 deleterious(0) possibly_damaging(0.899) TCGA-LK-A4NW-01 17 76970871 76970871 T G LGALS3BP Missense_Mutation p.Q92P 0.16 tolerated(0.05) possibly_damaging(0.773) TCGA-LK-A4NW-01 18 33694215 33694215 T A SLC39A6 Missense_Mutation p.H563L 0.27 deleterious(0.04) probably_damaging(1) TCGA-LK-A4NW-01 19 38708233 38708233 T G DPF1 Splice_Site p.X226_splice 0.24 TCGA-LK-A4NW-01 19 5229622 5229622 C T PTPRS Silent p.S743S 0.20 TCGA-LK-A4NW-01 19 54675646 54675646 C A TMC4 Missense_Mutation p.A102S 0.28 tolerated(0.45) benign(0.051) TCGA-LK-A4NW-01 1 11190804 11190804 C T MTOR Missense_Mutation p.E1799K 0.06 tolerated(0.08) probably_damaging(0.996) TCGA-LK-A4NW-01 1 161019344 161019344 G T ARHGAP30 Nonsense_Mutation p.S519* 0.18 TCGA-LK-A4NW-01 1 167190149 167190149 A G POU2F1 Silent p.G5G 0.23 TCGA-LK-A4NW-01 1 167190152 167190152 A T POU2F1 Silent p.A6A 0.24 TCGA-LK-A4NW-01 1 214813977 214813977 C T CENPF Silent p.L766L 0.30 TCGA-LK-A4NW-01 1 223567523 223567523 C T C1orf65 Missense_Mutation p.R236W 0.26 deleterious(0.01) possibly_damaging(0.627) TCGA-LK-A4NW-01 1 67559093 67559093 G C C1orf141 Missense_Mutation p.F266L 0.28 deleterious(0.04) benign(0.002) TCGA-LK-A4NW-01 1 74836079 74836080 - T FPGT-TNNI3K Intron 0.19 TCGA-LK-A4NW-01 2 131674114 131674114 C T ARHGEF4 5'Flank 0.19 TCGA-LK-A4NW-01 2 179629023 179629023 T C TTN Missense_Mutation p.E3332G 0.05 TCGA-LK-A4NW-01 2 90139543 90139543 T C IGKV1D-16 Missense_Mutation p.F105S 0.24 tolerated(0.11) benign(0.032) TCGA-LK-A4NW-01 3 172165335 172165335 C A GHSR Intron 0.19 TCGA-LK-A4NW-01 3 52441226 52441226 C T BAP1 Missense_Mutation p.E182K 0.32 deleterious(0) probably_damaging(1) TCGA-LK-A4NW-01 4 4199728 4199728 T A OTOP1 Missense_Mutation p.Q278L 0.20 deleterious(0.02) possibly_damaging(0.628) TCGA-LK-A4NW-01 5 127730941 127730941 C T FBN2 Missense_Mutation p.G369S 0.31 tolerated(0.59) benign(0.019) TCGA-LK-A4NW-01 5 54275198 54275198 C T ESM1 Missense_Mutation p.G173R 0.16 tolerated(1) benign(0.001) TCGA-LK-A4NW-01 6 63990991 63990991 G T LGSN Silent p.T155T 0.24 TCGA-LK-A4NW-01 7 103130280 103130280 G A RELN Silent p.H3224H 0.09 TCGA-LK-A4NW-01 8 21957373 21957375 TCA - FAM160B2 In_Frame_Del p.I438del 0.15 TCGA-LK-A4NW-01 9 130473679 130473679 G A C9orf117 Silent p.E253E 0.31 TCGA-LK-A4NW-01 9 34249907 34249907 C T UBAP1 Missense_Mutation p.S469L 0.22 tolerated(0.05) possibly_damaging(0.463) TCGA-LK-A4NY-01 10 23287247 23287247 G A ARMC3 Missense_Mutation p.R449H 0.12 tolerated(0.37) benign(0.001) TCGA-LK-A4NY-01 11 101761954 101761954 T A ANGPTL5 3'UTR 0.44 TCGA-LK-A4NY-01 11 60704287 60704287 G A TMEM132A Missense_Mutation p.E995K 0.44 deleterious(0) probably_damaging(0.997) TCGA-LK-A4NY-01 11 60889283 60889283 A G CD5 Missense_Mutation p.T336A 0.42 tolerated(0.34) benign(0.006) TCGA-LK-A4NY-01 11 62532849 62532849 A G POLR2G Missense_Mutation p.N124S 0.19 tolerated(0.15) benign(0) TCGA-LK-A4NY-01 11 77780930 77780930 C G NDUFC2 3'UTR 0.36 TCGA-LK-A4NY-01 12 109371178 109371178 G C SVOP Missense_Mutation p.T61S 0.31 tolerated(0.14) benign(0.294) TCGA-LK-A4NY-01 12 110906462 110906462 G C GPN3 5'UTR 0.32 TCGA-LK-A4NY-01 12 115120678 115120678 T A TBX3 Nonsense_Mutation p.K110* 0.33 TCGA-LK-A4NY-01 12 6076678 6076678 T C VWF Missense_Mutation p.K2621E 0.09 deleterious(0) possibly_damaging(0.874) TCGA-LK-A4NY-01 12 93220049 93220049 C A EEA1 Missense_Mutation p.V473F 0.38 tolerated(0.43) benign(0.005) TCGA-LK-A4NY-01 13 100207814 100207820 TGGCTTC - TM9SF2 Frame_Shift_Del p.G556Yfs*47 0.13 TCGA-LK-A4NY-01 13 24190044 24190044 G A TNFRSF19 Silent p.V73V 0.29 TCGA-LK-A4NY-01 13 72256005 72256005 C G DACH1 Missense_Mutation p.V298L 0.39 benign(0.237) TCGA-LK-A4NY-01 14 23495333 23495333 C T PSMB5 Missense_Mutation p.D253N 0.33 deleterious(0.02) benign(0.019) TCGA-LK-A4NY-01 15 42059200 42059200 G A MGA Missense_Mutation p.E2974K 0.57 deleterious(0) benign(0.418) TCGA-LK-A4NY-01 16 2024406 2024406 C A TBL3 Missense_Mutation p.D73E 0.38 tolerated(0.41) benign(0.001) TCGA-LK-A4NY-01 16 57850369 57850369 A T CTD-2600O9.1 Missense_Mutation p.R96S 0.34 benign(0.402) TCGA-LK-A4NY-01 17 17910848 17910848 G T LRRC48 Intron 0.33 TCGA-LK-A4NY-01 17 1840891 1840891 G A RTN4RL1 Silent p.S75S 0.07 TCGA-LK-A4NY-01 17 37826561 37826561 T C PNMT Silent p.Y256Y 0.26 TCGA-LK-A4NY-01 19 13249081 13249081 T A NACC1 Missense_Mutation p.L482H 0.06 deleterious(0) benign(0.027) TCGA-LK-A4NY-01 19 14829486 14829486 C G ZNF333 Silent p.P449P 0.31 TCGA-LK-A4NY-01 19 19656432 19656432 C G CILP2 Silent p.L1026L 0.07 TCGA-LK-A4NY-01 19 4544093 4544093 G A SEMA6B Silent p.A729A 0.38 TCGA-LK-A4NY-01 19 49387044 49387044 G A TULP2 Silent p.S414S 0.20 TCGA-LK-A4NY-01 19 50982276 50982276 T C EMC10 Missense_Mutation p.S84P 0.50 deleterious(0.01) probably_damaging(0.982) TCGA-LK-A4NY-01 1 23191588 23191588 A T EPHB2 Missense_Mutation p.S396C 0.38 tolerated(0.18) probably_damaging(0.978) TCGA-LK-A4NY-01 1 24684960 24684960 C A STPG1 3'UTR 0.28 TCGA-LK-A4NY-01 1 36379503 36379503 A C AGO1 Missense_Mutation p.K548T 0.30 deleterious(0) benign(0.444) TCGA-LK-A4NY-01 1 55051557 55051557 C G ACOT11 Missense_Mutation p.I97M 0.32 deleterious(0.04) possibly_damaging(0.612) TCGA-LK-A4NY-01 1 55598310 55598310 G A USP24 Nonsense_Mutation p.Q1149* 0.36 TCGA-LK-A4NY-01 1 67702415 67702415 A T IL23R Missense_Mutation p.K325N 0.32 tolerated(0.07) benign(0) TCGA-LK-A4NY-01 1 89579763 89579763 G C GBP2 Missense_Mutation p.A362G 0.04 deleterious(0) possibly_damaging(0.88) TCGA-LK-A4NY-01 1 94643171 94643171 T A ARHGAP29 Missense_Mutation p.S968C 0.53 tolerated(0.2) benign(0.235) TCGA-LK-A4NY-01 20 30607110 30607110 A G CCM2L Silent p.G277G 0.45 TCGA-LK-A4NY-01 20 306605 306605 G C SOX12 Missense_Mutation p.G13R 0.22 tolerated(0.09) benign(0.013) TCGA-LK-A4NY-01 20 31024805 31024805 C G ASXL1 Silent p.L1430L 0.34 TCGA-LK-A4NY-01 20 60921232 60921232 T C LAMA5 Missense_Mutation p.E441G 0.34 probably_damaging(0.987) TCGA-LK-A4NY-01 22 43564793 43564793 G T TTLL12 Missense_Mutation p.D590E 0.60 tolerated(0.4) benign(0.013) TCGA-LK-A4NY-01 2 120194969 120194969 G A TMEM37 Missense_Mutation p.A176T 0.25 tolerated(0.15) probably_damaging(0.921) TCGA-LK-A4NY-01 2 186673747 186673747 G A FSIP2 Missense_Mutation p.A6661T 0.38 possibly_damaging(0.808) TCGA-LK-A4NY-01 2 44078729 44078729 G A ABCG8 Missense_Mutation p.G110E 0.35 deleterious(0.02) possibly_damaging(0.75) TCGA-LK-A4NY-01 3 126752775 126752775 C A PLXNA1 Missense_Mutation p.A1869D 0.39 deleterious(0) possibly_damaging(0.851) TCGA-LK-A4NY-01 3 12944310 12944310 C T IQSEC1 Missense_Mutation p.R937H 0.34 deleterious(0.02) benign(0.277) TCGA-LK-A4NY-01 3 133647439 133647439 C A C3orf36 Missense_Mutation p.G70V 0.35 tolerated_low_confidence(0.09) probably_damaging(0.979) TCGA-LK-A4NY-01 3 183056587 183056607 CCGGCACTTTCGTTTTAAACT - MCF2L2 Splice_Site p.X156_splice 0.24 TCGA-LK-A4NY-01 3 42684002 42684002 C A NKTR Missense_Mutation p.S1352R 0.25 deleterious_low_confidence(0) unknown(0) TCGA-LK-A4NY-01 3 64524971 64524971 C T ADAMTS9 Splice_Site p.X1841_splice 0.32 TCGA-LK-A4NY-01 4 41750749 41750749 T A PHOX2B 5'UTR 0.36 TCGA-LK-A4NY-01 5 139743360 139743360 A T SLC4A9 Missense_Mutation p.Y400F 0.35 tolerated(0.65) probably_damaging(0.999) TCGA-LK-A4NY-01 5 148699145 148699145 G C AFAP1L1 Missense_Mutation p.A494P 0.30 deleterious(0) probably_damaging(1) TCGA-LK-A4NY-01 5 157233080 157233080 G A CLINT1 Missense_Mutation p.P246S 0.38 tolerated(0.57) benign(0.027) TCGA-LK-A4NY-01 6 117642507 117642507 C A ROS1 Missense_Mutation p.V1898L 0.41 tolerated(0.09) benign(0.399) TCGA-LK-A4NY-01 6 126210419 126210419 G A NCOA7 Missense_Mutation p.E407K 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.455) TCGA-LK-A4NY-01 6 36922447 36922447 C T PI16 5'UTR 0.44 TCGA-LK-A4NY-01 7 100683959 100683959 A G MUC17 Missense_Mutation p.T3088A 0.35 possibly_damaging(0.829) TCGA-LK-A4NY-01 7 108524605 108524605 T C C7orf66 5'UTR 0.39 TCGA-LK-A4NY-01 8 101299846 101299846 T C RNF19A Missense_Mutation p.H186R 0.35 tolerated(0.2) benign(0.146) TCGA-LK-A4NY-01 8 30702133 30702133 C T TEX15 Silent p.A1467A 0.35 TCGA-LK-A4NY-01 8 67513949 67513949 A G MYBL1 Missense_Mutation p.I61T 0.30 deleterious(0) probably_damaging(0.987) TCGA-LK-A4NY-01 8 95272595 95272610 TGGCGGTTGCGGTGGC - GEM Frame_Shift_Del p.S41Ifs*36 0.24 TCGA-LK-A4NY-01 9 139836757 139836757 G T FBXW5 Silent p.I279I 0.44 TCGA-LK-A4NY-01 9 36840564 36840564 C T PAX5 Missense_Mutation p.R390H 0.24 tolerated_low_confidence(0.28) probably_damaging(0.998) TCGA-LK-A4NZ-01 10 75567173 75567173 T A NDST2 Missense_Mutation p.E325V 0.14 tolerated(0.08) possibly_damaging(0.597) TCGA-LK-A4NZ-01 11 61536758 61536758 C T MYRF Missense_Mutation p.S142L 0.28 deleterious(0) probably_damaging(0.994) TCGA-LK-A4NZ-01 11 6586987 6586987 G A DNHD1 Missense_Mutation p.E3607K 0.11 benign(0) TCGA-LK-A4NZ-01 12 48140606 48140606 G C RAPGEF3 Intron 0.14 TCGA-LK-A4NZ-01 13 103385602 103385602 G A CCDC168 Silent p.I1186I 0.22 TCGA-LK-A4NZ-01 15 72859450 72859450 T G ARIH1 Missense_Mutation p.L320V 0.22 tolerated(0.1) probably_damaging(1) TCGA-LK-A4NZ-01 16 15703434 15703434 G A KIAA0430 Silent p.Y1300Y 0.20 TCGA-LK-A4NZ-01 16 3613369 3613369 C T NLRC3 Silent p.P570P 0.23 TCGA-LK-A4NZ-01 16 72829883 72829883 G C ZFHX3 Missense_Mutation p.P2233R 0.24 probably_damaging(0.979) TCGA-LK-A4NZ-01 17 40718055 40718055 G T COASY 3'UTR 0.14 TCGA-LK-A4NZ-01 19 12691312 12691312 C G ZNF490 Missense_Mutation p.R526T 0.17 deleterious(0.02) benign(0.005) TCGA-LK-A4NZ-01 19 1912211 1912211 C G ADAT3 Missense_Mutation p.D55E 0.14 tolerated(0.46) benign(0.005) TCGA-LK-A4NZ-01 19 41405966 41405966 C T CYP2G1P RNA 0.23 TCGA-LK-A4NZ-01 19 47712571 47712571 C T SAE1 3'UTR 0.14 TCGA-LK-A4NZ-01 19 53770147 53770147 G C VN1R4 Missense_Mutation p.L258V 0.27 tolerated(0.54) benign(0.101) TCGA-LK-A4NZ-01 1 156246985 156246985 C T SMG5 Silent p.L115L 0.32 TCGA-LK-A4NZ-01 1 176661397 176661397 C A PAPPA2 Missense_Mutation p.T856N 0.25 tolerated(0.11) benign(0.015) TCGA-LK-A4NZ-01 1 35441898 35441898 A C RP11-244H3.1 RNA 0.18 TCGA-LK-A4NZ-01 20 17445987 17445987 C T PCSK2 Missense_Mutation p.R407W 0.10 deleterious(0) probably_damaging(1) TCGA-LK-A4NZ-01 20 31611322 31611322 G A BPIFB2 3'UTR 0.24 TCGA-LK-A4NZ-01 21 47551991 47551991 G A COL6A2 Missense_Mutation p.R862Q 0.16 tolerated(0.15) benign(0.398) TCGA-LK-A4NZ-01 22 30038257 30038258 - A NF2 Nonsense_Mutation p.Y144* 0.27 TCGA-LK-A4NZ-01 2 128338352 128338352 C T MYO7B Silent p.D345D 0.09 TCGA-LK-A4NZ-01 2 170058195 170058196 - AA LRP2 Frame_Shift_Ins p.I2799Lfs*6 0.14 TCGA-LK-A4NZ-01 2 179560680 179560680 C A TTN Missense_Mutation p.R10373S 0.17 TCGA-LK-A4NZ-01 2 204291923 204291923 A G ABI2 Missense_Mutation p.K426E 0.17 tolerated(0.09) possibly_damaging(0.76) TCGA-LK-A4NZ-01 3 9885663 9885663 G A RPUSD3 Silent p.R12R 0.25 TCGA-LK-A4NZ-01 4 156825179 156825180 - A TDO2 Frame_Shift_Ins p.L18Tfs*17 0.09 TCGA-LK-A4NZ-01 4 57180404 57180404 A T KIAA1211 Nonsense_Mutation p.R246* 0.27 TCGA-LK-A4NZ-01 5 1264701 1264701 C A TERT Silent p.L887L 0.18 TCGA-LK-A4NZ-01 5 16703130 16703130 C T MYO10 Missense_Mutation p.R805Q 0.22 deleterious(0) probably_damaging(0.994) TCGA-LK-A4NZ-01 6 150267553 150267553 A G ULBP2 Missense_Mutation p.E132G 0.25 tolerated(0.11) benign(0.006) TCGA-LK-A4NZ-01 6 33245564 33245564 C T B3GALT4 Missense_Mutation p.S123F 0.21 deleterious(0.04) possibly_damaging(0.601) TCGA-LK-A4NZ-01 7 146471377 146471377 C A CNTNAP2 Missense_Mutation p.P38T 0.22 deleterious(0.03) benign(0.039) TCGA-LK-A4NZ-01 8 28827942 28827942 C T HMBOX1 Missense_Mutation p.R136C 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-LK-A4NZ-01 8 39602372 39602372 G T ADAM2 3'UTR 0.27 TCGA-LK-A4NZ-01 8 57878872 57878872 C T IMPAD1 Missense_Mutation p.R229H 0.11 deleterious(0.02) probably_damaging(0.985) TCGA-LK-A4NZ-01 8 75156795 75156795 G A JPH1 Missense_Mutation p.S625L 0.13 tolerated(0.29) benign(0.021) TCGA-LK-A4NZ-01 9 5463111 5463111 G T CD274 Missense_Mutation p.L224F 0.19 deleterious(0.02) probably_damaging(0.992) TCGA-LK-A4NZ-01 9 91616333 91616333 G A S1PR3 Missense_Mutation p.R73H 0.18 deleterious(0.01) probably_damaging(1) TCGA-LK-A4O0-01 10 104230500 104230500 G A TMEM180 Silent p.A110A 0.22 TCGA-LK-A4O0-01 10 104230501 104230501 C T TMEM180 Silent p.L111L 0.21 TCGA-LK-A4O0-01 10 105793018 105793018 C T COL17A1 Silent p.A1424A 0.19 TCGA-LK-A4O0-01 10 106125714 106125714 A C CCDC147 Missense_Mutation p.Q247P 0.28 tolerated(0.07) benign(0.377) TCGA-LK-A4O0-01 10 50531055 50531055 C T C10orf71 Silent p.S155S 0.28 TCGA-LK-A4O0-01 10 81317258 81317258 G A SFTPA2 Nonsense_Mutation p.Q152* 0.25 TCGA-LK-A4O0-01 11 111943836 111943836 A G PIH1D2 Silent p.D21D 0.19 TCGA-LK-A4O0-01 11 119005009 119005009 C T HINFP Missense_Mutation p.A452V 0.28 tolerated(0.4) benign(0.002) TCGA-LK-A4O0-01 11 65273124 65273124 C T MALAT1 RNA 0.20 TCGA-LK-A4O0-01 12 27070634 27070634 C A ASUN Missense_Mutation p.G308C 0.14 deleterious(0) probably_damaging(0.953) TCGA-LK-A4O0-01 12 4737117 4737117 T A AKAP3 Silent p.L317L 0.12 TCGA-LK-A4O0-01 12 54903741 54903741 C A NCKAP1L Missense_Mutation p.A236D 0.24 tolerated(0.65) benign(0.027) TCGA-LK-A4O0-01 13 21557756 21557756 T A LATS2 Nonsense_Mutation p.K697* 0.24 TCGA-LK-A4O0-01 13 33629199 33629199 G A KL Missense_Mutation p.G449E 0.28 tolerated(0.34) benign(0.072) TCGA-LK-A4O0-01 14 19988440 19988440 G A POTEM 3'UTR 0.20 TCGA-LK-A4O0-01 14 69993453 69993453 G A PLEKHD1 Silent p.E321E 0.17 TCGA-LK-A4O0-01 15 65992916 65992916 G A DENND4A Silent p.I932I 0.22 TCGA-LK-A4O0-01 15 65992917 65992917 A T DENND4A Missense_Mutation p.I932N 0.21 deleterious(0.01) benign(0.017) TCGA-LK-A4O0-01 15 65992919 65992919 T A DENND4A Missense_Mutation p.L931F 0.22 tolerated(0.2) benign(0.002) TCGA-LK-A4O0-01 16 61689592 61689592 C A CDH8 Missense_Mutation p.G563V 0.32 deleterious(0.02) benign(0.38) TCGA-LK-A4O0-01 17 73498977 73498977 G A CASKIN2 Silent p.P726P 0.26 TCGA-LK-A4O0-01 18 33848634 33848634 G T MOCOS Missense_Mutation p.D885Y 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.707) TCGA-LK-A4O0-01 18 33952707 33952707 G A FHOD3 Missense_Mutation p.E113K 0.28 deleterious(0.03) probably_damaging(0.951) TCGA-LK-A4O0-01 19 12883048 12883048 G A HOOK2 Missense_Mutation p.P159S 0.14 tolerated(0.58) benign(0.007) TCGA-LK-A4O0-01 19 50985982 50985982 C T EMC10 3'UTR 0.19 TCGA-LK-A4O0-01 19 53959398 53959398 G C ZNF761 RNA 0.17 TCGA-LK-A4O0-01 19 55595189 55595189 T G EPS8L1 Intron 0.28 TCGA-LK-A4O0-01 19 55595193 55595193 A G EPS8L1 Intron 0.50 TCGA-LK-A4O0-01 19 5828164 5828164 C T NRTN Missense_Mutation p.R192C 0.30 deleterious(0) possibly_damaging(0.47) TCGA-LK-A4O0-01 1 156617791 156617791 C A BCAN Missense_Mutation p.P220T 0.26 deleterious(0) probably_damaging(1) TCGA-LK-A4O0-01 1 185056684 185056684 C T RNF2 Intron 0.22 TCGA-LK-A4O0-01 1 196971624 196971624 A C CFHR5 Missense_Mutation p.Q387P 0.19 tolerated(0.1) benign(0) TCGA-LK-A4O0-01 1 200977958 200977958 C T KIF21B Missense_Mutation p.R129H 0.31 tolerated(0.24) possibly_damaging(0.515) TCGA-LK-A4O0-01 1 225347067 225347067 G C DNAH14 Missense_Mutation p.E847D 0.12 tolerated(0.14) benign(0.015) TCGA-LK-A4O0-01 1 46080857 46080857 C G NASP Silent p.V613V 0.22 TCGA-LK-A4O0-01 2 212488677 212488677 A C ERBB4 Silent p.L724L 0.08 TCGA-LK-A4O0-01 2 27681014 27681014 C T IFT172 Missense_Mutation p.G985D 0.18 deleterious(0.01) probably_damaging(0.947) TCGA-LK-A4O0-01 2 3197776 3197776 G A TSSC1 Missense_Mutation p.S272F 0.13 deleterious(0) probably_damaging(0.99) TCGA-LK-A4O0-01 2 69092773 69092773 C T BMP10 Missense_Mutation p.G422D 0.29 deleterious(0.02) probably_damaging(1) TCGA-LK-A4O0-01 3 184953171 184953171 A T EHHADH Missense_Mutation p.N86K 0.22 tolerated(0.09) benign(0.102) TCGA-LK-A4O0-01 3 50332426 50332426 G A HYAL3 Missense_Mutation p.P203L 0.16 deleterious(0) probably_damaging(0.992) TCGA-LK-A4O0-01 5 167182141 167182141 G A TENM2 Intron 0.15 TCGA-LK-A4O0-01 5 54456165 54456165 G A GPX8 Missense_Mutation p.A49T 0.23 tolerated(0.47) benign(0.002) TCGA-LK-A4O0-01 6 160898304 160898304 G A LPAL2 RNA 0.22 TCGA-LK-A4O0-01 6 34850805 34850805 G A TAF11 Missense_Mutation p.S75L 0.31 tolerated(0.09) benign(0.008) TCGA-LK-A4O0-01 6 89907930 89907930 G A GABRR1 Silent p.Y127Y 0.23 TCGA-LK-A4O0-01 7 151800250 151800250 G A GALNT11 Missense_Mutation p.C158Y 0.40 deleterious(0.02) benign(0.35) TCGA-LK-A4O0-01 7 23207510 23207510 C T KLHL7 Silent p.H411H 0.18 TCGA-LK-A4O0-01 7 86541493 86541493 G T KIAA1324L Missense_Mutation p.D688E 0.19 tolerated(0.07) benign(0.249) TCGA-LK-A4O0-01 8 61533344 61533344 C G RAB2A 3'UTR 0.44 TCGA-LK-A4O0-01 9 117359953 117359953 T G ATP6V1G1 Missense_Mutation p.L96W 0.23 deleterious(0) probably_damaging(0.995) TCGA-LK-A4O0-01 9 126136280 126136280 A G CRB2 Intron 0.33 TCGA-LK-A4O0-01 X 54482194 54482194 G A FGD1 Silent p.C622C 0.10 TCGA-LK-A4O0-01 Y 3447699 3447699 C A TGIF2LY Silent p.T138T 0.34 TCGA-LK-A4O0-01 Y 6736361 6736361 C A AMELY Missense_Mutation p.R97L 0.47 deleterious(0.03) benign(0.043) TCGA-LK-A4O2-01 10 85992637 85992637 G A LRIT1 Silent p.D306D 0.15 TCGA-LK-A4O2-01 10 90665384 90665384 A - STAMBPL1 Frame_Shift_Del p.N73Mfs*10 0.23 TCGA-LK-A4O2-01 11 64359362 64359362 G T SLC22A12 Missense_Mutation p.D112Y 0.22 deleterious(0.03) possibly_damaging(0.692) TCGA-LK-A4O2-01 11 76507141 76507141 C G TSKU Missense_Mutation p.H161D 0.26 tolerated(0.09) probably_damaging(0.994) TCGA-LK-A4O2-01 14 90755472 90755472 G A NRDE2 Silent p.H749H 0.34 TCGA-LK-A4O2-01 14 91780444 91780444 C T CCDC88C Silent p.S572S 0.29 TCGA-LK-A4O2-01 15 45879951 45879951 G C BLOC1S6 Intron 0.22 TCGA-LK-A4O2-01 16 4431134 4431134 A G VASN Missense_Mutation p.N86D 0.14 deleterious(0) probably_damaging(1) TCGA-LK-A4O2-01 16 48256700 48256700 A G ABCC11 Silent p.L196L 0.21 TCGA-LK-A4O2-01 16 4910817 4910817 A C UBN1 Missense_Mutation p.E275A 0.28 tolerated(0.6) benign(0.013) TCGA-LK-A4O2-01 16 51174687 51174687 G A SALL1 Silent p.C482C 0.25 TCGA-LK-A4O2-01 17 14204844 14204844 G A HS3ST3B1 Silent p.Q3Q 0.43 TCGA-LK-A4O2-01 17 20108189 20108189 C T SPECC1 Missense_Mutation p.P276L 0.23 tolerated(0.19) benign(0.341) TCGA-LK-A4O2-01 17 25628844 25628844 C T WSB1 Missense_Mutation p.A24V 0.22 tolerated(1) benign(0.197) TCGA-LK-A4O2-01 19 11533267 11533267 C T CCDC151 Missense_Mutation p.E436K 0.18 tolerated(0.62) benign(0.027) TCGA-LK-A4O2-01 19 14706105 14706105 T C CLEC17A Silent p.S141S 0.23 TCGA-LK-A4O2-01 19 4110622 4110622 C T MAP2K2 Missense_Mutation p.R112Q 0.24 deleterious(0.01) possibly_damaging(0.655) TCGA-LK-A4O2-01 19 50363510 50363523 GATTTCTCGCCGTA - PTOV1 Splice_Site p.X414_splice 0.25 TCGA-LK-A4O2-01 19 51274143 51274143 C T GPR32 Missense_Mutation p.P96S 0.26 deleterious(0.01) possibly_damaging(0.588) TCGA-LK-A4O2-01 1 109812339 109812339 C T CELSR2 Missense_Mutation p.S2335L 0.24 deleterious(0) probably_damaging(0.982) TCGA-LK-A4O2-01 1 21221979 21221979 G A EIF4G3 Missense_Mutation p.T622I 0.20 tolerated(0.35) benign(0.01) TCGA-LK-A4O2-01 1 241032147 241032147 G A RGS7 Silent p.S152S 0.27 TCGA-LK-A4O2-01 1 248487276 248487276 T G OR2M7 Missense_Mutation p.I199L 0.12 tolerated(0.42) benign(0.003) TCGA-LK-A4O2-01 1 47514269 47514269 C G CYP4X1 Missense_Mutation p.H414D 0.24 deleterious(0) probably_damaging(1) TCGA-LK-A4O2-01 20 20349545 20349545 G A INSM1 Missense_Mutation p.A212T 0.27 tolerated(0.28) possibly_damaging(0.499) TCGA-LK-A4O2-01 21 47685359 47685359 G A MCM3AP Missense_Mutation p.A1037V 0.41 tolerated(0.5) benign(0.001) TCGA-LK-A4O2-01 2 74734198 74734198 G A PCGF1 Missense_Mutation p.A57V 0.18 deleterious(0) probably_damaging(0.999) TCGA-LK-A4O2-01 2 86716659 86716659 C G KDM3A Missense_Mutation p.I1150M 0.25 deleterious(0.03) probably_damaging(0.997) TCGA-LK-A4O2-01 3 52438545 52438545 G A BAP1 Nonsense_Mutation p.Q392* 0.26 TCGA-LK-A4O2-01 5 61604275 61604275 G A KIF2A Intron 0.50 TCGA-LK-A4O2-01 7 1474291 1474291 A C MICALL2 Missense_Mutation p.S886A 0.22 tolerated(0.16) benign(0.214) TCGA-LK-A4O2-01 7 15726176 15726176 C G MEOX2 5'UTR 0.20 TCGA-LK-A4O2-01 7 82387998 82387998 T A PCLO Nonsense_Mutation p.K5108* 0.20 TCGA-LK-A4O2-01 8 11188600 11188604 GAAAG AAAA SLC35G5 5'UTR 0.28 TCGA-LK-A4O2-01 8 132966215 132966215 G A EFR3A Splice_Site p.X213_splice 0.25 TCGA-LK-A4O2-01 8 28997651 28997651 T A KIF13B Missense_Mutation p.I848F 0.28 tolerated(0.05) benign(0.187) TCGA-LK-A4O2-01 8 8749705 8749706 - AACT MFHAS1 Frame_Shift_Ins p.F288Lfs*18 0.33 TCGA-LK-A4O2-01 9 140137751 140137751 C T TUBB4B Silent p.L361L 0.23 TCGA-LK-A4O5-01 10 26939480 26939480 C A LINC00202-2 Intron 0.14 TCGA-LK-A4O5-01 10 33515092 33515092 C A NRP1 Missense_Mutation p.W369C 0.24 deleterious(0) probably_damaging(1) TCGA-LK-A4O5-01 10 48385871 48385871 G A RBP3 Missense_Mutation p.T1074M 0.27 deleterious(0) probably_damaging(0.938) TCGA-LK-A4O5-01 10 71682484 71682484 C T COL13A1 Silent p.G377G 0.23 TCGA-LK-A4O5-01 10 72536978 72536978 G A TBATA Silent p.G207G 0.37 TCGA-LK-A4O5-01 10 7409656 7409662 CGGGGTG - SFMBT2 Frame_Shift_Del p.H129Wfs*11 0.29 TCGA-LK-A4O5-01 11 47346332 47346332 G A MADD Intron 0.42 TCGA-LK-A4O5-01 11 55322267 55322267 G T OR4C15 Missense_Mutation p.G162V 0.25 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-LK-A4O5-01 11 60775266 60775266 A G CD6 Missense_Mutation p.N118S 0.20 tolerated(0.1) possibly_damaging(0.9) TCGA-LK-A4O5-01 12 53200861 53200861 T C KRT4 Missense_Mutation p.R519G 0.37 deleterious_low_confidence(0) unknown(0) TCGA-LK-A4O5-01 12 56744619 56744619 A C STAT2 Missense_Mutation p.I363S 0.43 deleterious(0) possibly_damaging(0.882) TCGA-LK-A4O5-01 12 7526000 7526000 G A CD163L1 Missense_Mutation p.H1216Y 0.34 deleterious(0.02) possibly_damaging(0.884) TCGA-LK-A4O5-01 14 65208746 65208746 C T PLEKHG3 Silent p.A781A 0.46 TCGA-LK-A4O5-01 15 43819146 43819146 C T MAP1A Silent p.L1825L 0.24 TCGA-LK-A4O5-01 16 1877746 1877746 C T FAHD1 Silent p.I172I 0.25 TCGA-LK-A4O5-01 16 3786772 3786772 T C CREBBP Missense_Mutation p.D1480G 0.32 unknown(0) TCGA-LK-A4O5-01 16 85143874 85143874 G A FAM92B Silent p.F71F 0.05 TCGA-LK-A4O5-01 17 7106850 7106850 G A DLG4 Missense_Mutation p.A176V 0.21 deleterious(0.02) probably_damaging(1) TCGA-LK-A4O5-01 17 74449103 74449103 C T UBE2O Missense_Mutation p.D41N 0.30 tolerated_low_confidence(0.56) unknown(0) TCGA-LK-A4O5-01 17 8022081 8022098 ATGCCCCGCGTGGCATTC - ALOXE3 Missense_Mutation 0.30 TCGA-LK-A4O5-01 18 61328355 61328355 G A SERPINB3 Silent p.I32I 0.27 TCGA-LK-A4O5-01 19 50316413 50316413 T C FUZ 5'UTR 0.31 TCGA-LK-A4O5-01 19 50881498 50881498 G C NR1H2 Missense_Mutation p.D92H 0.34 deleterious(0) probably_damaging(1) TCGA-LK-A4O5-01 1 151787518 151787518 G A RORC Nonsense_Mutation p.R228* 0.27 TCGA-LK-A4O5-01 1 155258090 155258090 C G HCN3 Missense_Mutation p.Q721E 0.29 deleterious_low_confidence(0.03) benign(0.018) TCGA-LK-A4O5-01 1 156697043 156697043 G A ISG20L2 Silent p.T134T 0.37 TCGA-LK-A4O5-01 1 197097732 197097732 G A ASPM Missense_Mutation p.R942C 0.06 deleterious(0) probably_damaging(1) TCGA-LK-A4O5-01 1 211093040 211093040 G C KCNH1 Missense_Mutation p.N468K 0.36 deleterious(0) probably_damaging(0.984) TCGA-LK-A4O5-01 1 26164015 26164015 G C AUNIP Missense_Mutation p.L37V 0.48 deleterious(0.01) possibly_damaging(0.801) TCGA-LK-A4O5-01 20 42092051 42092051 G C SRSF6 3'UTR 0.18 TCGA-LK-A4O5-01 20 44002534 44002534 C T TP53TG5 3'UTR 0.06 TCGA-LK-A4O5-01 20 62340312 62340312 A C ZGPAT Missense_Mutation p.E127A 0.35 tolerated(0.11) benign(0.008) TCGA-LK-A4O5-01 21 31588130 31588130 G T CLDN8 Missense_Mutation p.N38K 0.29 tolerated(0.09) benign(0.174) TCGA-LK-A4O5-01 22 30032739 30032739 G A NF2 Splice_Site p.X39_splice 0.17 TCGA-LK-A4O5-01 22 30070829 30070830 AA - NF2 Frame_Shift_Del p.K449Rfs*45 0.22 TCGA-LK-A4O5-01 2 111921800 111921800 A C BCL2L11 Missense_Mutation p.M197L 0.32 tolerated_low_confidence(1) benign(0) TCGA-LK-A4O5-01 2 111921809 111921809 C G BCL2L11 3'UTR 0.30 TCGA-LK-A4O5-01 2 15770926 15770926 A G DDX1 Missense_Mutation p.I707V 0.28 tolerated(0.55) benign(0.001) TCGA-LK-A4O5-01 2 201728930 201728930 G A CLK1 Missense_Mutation p.P7L 0.46 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-LK-A4O5-01 2 69664670 69664670 G A NFU1 5'UTR 0.31 TCGA-LK-A4O5-01 3 186953538 186953538 G A MASP1 Silent p.Y707Y 0.36 TCGA-LK-A4O5-01 4 126240480 126240480 G A FAT4 Missense_Mutation p.G972S 0.41 probably_damaging(1) TCGA-LK-A4O5-01 4 144480942 144480942 C T SMARCA5 3'Flank 0.29 TCGA-LK-A4O5-01 4 2701482 2701482 C T FAM193A Missense_Mutation p.R904W 0.29 deleterious(0) possibly_damaging(0.629) TCGA-LK-A4O5-01 5 1294054 1294054 G A TERT Missense_Mutation p.P316L 0.31 tolerated(0.25) benign(0.002) TCGA-LK-A4O5-01 5 140256339 140256339 C T PCDHA12 Missense_Mutation p.R428W 0.37 deleterious_low_confidence(0.03) possibly_damaging(0.461) TCGA-LK-A4O5-01 5 174869749 174869749 G A DRD1 Silent p.S118S 0.06 TCGA-LK-A4O5-01 5 176942735 176942735 G A DDX41 Silent p.D174D 0.10 TCGA-LK-A4O5-01 6 168377461 168377461 C T RP3-470B24.5 RNA 0.23 TCGA-LK-A4O5-01 6 75833788 75833788 T C COL12A1 Silent p.T2249T 0.41 TCGA-LK-A4O5-01 7 122114462 122114462 G A CADPS2 Silent p.H657H 0.30 TCGA-LK-A4O5-01 7 138603614 138603614 T A KIAA1549 Missense_Mutation p.Y253F 0.31 deleterious(0.02) benign(0.372) TCGA-LK-A4O5-01 7 149523785 149523785 G A SSPO RNA 0.29 TCGA-LK-A4O5-01 7 77240328 77240328 G A PTPN12 Missense_Mutation p.E302K 0.16 deleterious(0.03) benign(0.248) TCGA-LK-A4O5-01 8 33354763 33354763 G T MAK16 Missense_Mutation p.R218I 0.25 tolerated(0.07) benign(0.111) TCGA-LK-A4O5-01 8 88885714 88885714 C T DCAF4L2 Silent p.S162S 0.05 TCGA-LK-A4O5-01 9 131193538 131193538 G C CERCAM Missense_Mutation p.G387R 0.34 deleterious(0) probably_damaging(0.997) TCGA-LK-A4O5-01 9 38595636 38595636 G A ANKRD18A Silent p.G567G 0.16 TCGA-LK-A4O5-01 X 107911594 107911594 G A COL4A5 Missense_Mutation p.G1217D 0.50 unknown(0) TCGA-LK-A4O5-01 X 21863464 21863464 T A MBTPS2 Missense_Mutation p.S134T 0.35 tolerated_low_confidence(0.42) benign(0.001) TCGA-LK-A4O6-01 10 13494566 13494566 C A BEND7 Missense_Mutation p.A334S 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-LK-A4O6-01 10 89622169 89622169 C T KLLN Missense_Mutation p.V26I 0.16 tolerated(0.13) possibly_damaging(0.621) TCGA-LK-A4O6-01 12 133810885 133810885 C A ANHX Nonsense_Mutation p.E20* 0.26 TCGA-LK-A4O6-01 12 76448807 76448807 G A NAP1L1 Nonsense_Mutation p.Q208* 0.12 TCGA-LK-A4O6-01 13 111294869 111294869 C T CARS2 Splice_Site p.X473_splice 0.13 TCGA-LK-A4O6-01 13 99092225 99092225 G T FARP1 Missense_Mutation p.S815I 0.15 deleterious(0) possibly_damaging(0.776) TCGA-LK-A4O6-01 14 42356910 42356910 A G LRFN5 Missense_Mutation p.N361S 0.21 deleterious(0) probably_damaging(0.992) TCGA-LK-A4O6-01 14 64066236 64066236 A C WDR89 Missense_Mutation p.L142W 0.06 deleterious(0) possibly_damaging(0.571) TCGA-LK-A4O6-01 15 41276401 41276401 G A INO80 Silent p.F1357F 0.11 TCGA-LK-A4O6-01 17 5317405 5317405 G C NUP88 Missense_Mutation p.L173V 0.17 tolerated(0.09) benign(0.319) TCGA-LK-A4O6-01 19 39576027 39576027 C A PAPL Missense_Mutation p.P40T 0.16 tolerated(0.19) benign(0.007) TCGA-LK-A4O6-01 19 49001892 49001892 C - LMTK3 Frame_Shift_Del p.A841Rfs*46 0.16 TCGA-LK-A4O6-01 19 51844807 51844807 C T VSIG10L Silent p.P165P 0.12 TCGA-LK-A4O6-01 19 55993939 55993939 G A ZNF628 Missense_Mutation p.G460D 0.11 deleterious(0) probably_damaging(0.995) TCGA-LK-A4O6-01 19 56482063 56482063 G A NLRP8 Splice_Site p.X845_splice 0.22 TCGA-LK-A4O6-01 19 58791014 58791014 A G ZNF8 Intron 0.21 TCGA-LK-A4O6-01 19 7614810 7614810 C T PNPLA6 Silent p.F551F 0.15 TCGA-LK-A4O6-01 1 19166247 19166247 G A TAS1R2 Missense_Mutation p.T789I 0.18 tolerated(0.11) probably_damaging(0.971) TCGA-LK-A4O6-01 20 5297153 5297153 T C PROKR2 5'UTR 0.10 TCGA-LK-A4O6-01 3 119190164 119190164 A - POGLUT1 Frame_Shift_Del p.E63Rfs*3 0.15 TCGA-LK-A4O6-01 4 10542214 10542214 A T CLNK Missense_Mutation p.L169H 0.14 deleterious(0) probably_damaging(0.959) TCGA-LK-A4O6-01 4 70351113 70351113 C G UGT2B4 Missense_Mutation p.G375R 0.13 deleterious(0) probably_damaging(0.998) TCGA-LK-A4O6-01 5 140801917 140801917 C G PCDHGA11 Missense_Mutation p.Q375E 0.08 tolerated_low_confidence(0.07) benign(0.067) TCGA-LK-A4O6-01 5 14507242 14507242 G C TRIO Missense_Mutation p.G2875A 0.13 unknown(0) TCGA-LK-A4O6-01 5 177633802 177633802 A G HNRNPAB Missense_Mutation p.K150E 0.17 deleterious(0) probably_damaging(0.971) TCGA-LK-A4O6-01 5 75621214 75621214 G A SV2C Missense_Mutation p.A676T 0.19 deleterious(0) possibly_damaging(0.866) TCGA-LK-A4O6-01 6 25479398 25479398 T C LRRC16A Intron 0.19 TCGA-LK-A4O6-01 6 26250458 26250458 G T HIST1H3F Missense_Mutation p.Q126K 0.14 deleterious_low_confidence(0.01) benign(0.014) TCGA-LK-A4O6-01 6 31915281 31915281 C T CFB Missense_Mutation p.T716M 0.16 deleterious(0.02) probably_damaging(0.997) TCGA-LK-A4O6-01 7 92763916 92763916 T G SAMD9L Missense_Mutation p.K457Q 0.13 deleterious(0.01) possibly_damaging(0.517) TCGA-LK-A4O6-01 8 70981788 70981788 G A PRDM14 Missense_Mutation p.P103L 0.14 tolerated_low_confidence(0.05) possibly_damaging(0.476) TCGA-LK-A4O6-01 9 117838732 117838732 C T TNC Missense_Mutation p.G933R 0.18 deleterious(0) probably_damaging(1) TCGA-LK-A4O6-01 X 105197059 105197059 G A NRK Missense_Mutation p.G1517D 0.18 tolerated(0.12) benign(0.192) TCGA-LK-A4O6-01 X 111698133 111698133 G A ZCCHC16 Silent p.E59E 0.13 TCGA-LK-A4O6-01 X 138724658 138724658 C T MCF2 Intron 0.11 TCGA-LK-A4O6-01 X 36254182 36254182 A C CXorf30 5'UTR 0.21 TCGA-LK-A4O7-01 10 104176284 104176284 C T PSD Missense_Mutation p.R171Q 0.33 tolerated_low_confidence(0.4) benign(0) TCGA-LK-A4O7-01 10 79567558 79567558 T C DLG5 Missense_Mutation p.I1598V 0.38 tolerated(0.4) benign(0.001) TCGA-LK-A4O7-01 10 97194379 97194379 C G SORBS1 Missense_Mutation p.D58H 0.35 deleterious_low_confidence(0) possibly_damaging(0.808) TCGA-LK-A4O7-01 10 98118764 98118764 C T OPALIN 5'UTR 0.40 TCGA-LK-A4O7-01 11 115099860 115099860 G A CADM1 Nonsense_Mutation p.Q232* 0.10 TCGA-LK-A4O7-01 11 57102669 57102669 G A SSRP1 5'UTR 0.40 TCGA-LK-A4O7-01 11 57144283 57144283 G A PRG3 3'UTR 0.43 TCGA-LK-A4O7-01 11 6048077 6048077 A G OR56A1 Silent p.L286L 0.64 TCGA-LK-A4O7-01 11 63488088 63488088 A C RTN3 Missense_Mutation p.D705A 0.04 deleterious(0.02) benign(0.293) TCGA-LK-A4O7-01 11 67818302 67818302 C T TCIRG1 3'UTR 0.39 TCGA-LK-A4O7-01 12 43822302 43822302 A C ADAMTS20 Silent p.T1229T 0.36 TCGA-LK-A4O7-01 14 71202739 71202739 G A MAP3K9 Nonsense_Mutation p.Q618* 0.52 TCGA-LK-A4O7-01 15 89010862 89010862 C A MRPS11 5'UTR 0.37 TCGA-LK-A4O7-01 16 57965643 57965643 T G CNGB1 Silent p.P504P 0.35 TCGA-LK-A4O7-01 17 40951019 40951019 G C CNTD1 5'UTR 0.45 TCGA-LK-A4O7-01 19 15291520 15291520 C A NOTCH3 Missense_Mutation p.L1038F 0.40 deleterious(0.03) benign(0.347) TCGA-LK-A4O7-01 19 36606393 36606393 G A TBCB 5'UTR 0.25 TCGA-LK-A4O7-01 19 44116444 44116444 G A SRRM5 Missense_Mutation p.M57I 0.39 tolerated(0.38) benign(0.006) TCGA-LK-A4O7-01 19 54784141 54784141 G T LILRB2 Silent p.G16G 0.36 TCGA-LK-A4O7-01 19 58281056 58281056 C T ZNF586 5'UTR 0.35 TCGA-LK-A4O7-01 1 151825975 151825975 G A THEM5 Missense_Mutation p.R23C 0.36 tolerated(0.34) benign(0.002) TCGA-LK-A4O7-01 1 155228619 155228623 ATCCA - SCAMP3 Frame_Shift_Del p.W171Vfs*51 0.29 TCGA-LK-A4O7-01 1 22336262 22336262 C T CELA3A Missense_Mutation p.T236I 0.61 deleterious(0.04) probably_damaging(0.992) TCGA-LK-A4O7-01 1 225591151 225591151 G A LBR Silent p.L568L 0.29 TCGA-LK-A4O7-01 1 228404177 228404177 G A OBSCN Silent p.L717L 0.35 TCGA-LK-A4O7-01 1 27676921 27676921 G A SYTL1 Missense_Mutation p.R317H 0.58 deleterious(0) probably_damaging(0.997) TCGA-LK-A4O7-01 20 34450997 34450997 T A PHF20 Missense_Mutation p.D161E 0.37 tolerated(1) benign(0.007) TCGA-LK-A4O7-01 20 35737040 35737040 T C MROH8 Missense_Mutation p.N1008S 0.46 tolerated(1) benign(0.006) TCGA-LK-A4O7-01 20 57769019 57769019 C T ZNF831 Missense_Mutation p.S982L 0.42 tolerated(0.16) benign(0.311) TCGA-LK-A4O7-01 21 40568586 40568586 T C BRWD1 Missense_Mutation p.N2137D 0.40 tolerated_low_confidence(0.29) benign(0.016) TCGA-LK-A4O7-01 21 45400874 45400874 C A AGPAT3 Missense_Mutation p.A283E 0.31 tolerated(0.34) benign(0.004) TCGA-LK-A4O7-01 22 19707153 19707153 C A SEPT5 Missense_Mutation p.A28D 0.07 deleterious(0) possibly_damaging(0.747) TCGA-LK-A4O7-01 2 128346120 128346120 A G MYO7B Missense_Mutation p.H615R 0.38 tolerated(0.28) benign(0.034) TCGA-LK-A4O7-01 2 159477614 159477614 A - PKP4 Frame_Shift_Del p.S132Lfs*18 0.23 TCGA-LK-A4O7-01 2 179395163 179395163 C T TTN Silent p.K35393K 0.39 TCGA-LK-A4O7-01 2 198570173 198570173 C T MARS2 Missense_Mutation p.A15V 0.31 tolerated_low_confidence(0.05) benign(0.016) TCGA-LK-A4O7-01 2 20162073 20162073 C A WDR35 Nonsense_Mutation p.E404* 0.51 TCGA-LK-A4O7-01 2 220041604 220041604 G A CNPPD1 Intron 0.33 TCGA-LK-A4O7-01 2 233001192 233001192 T C DIS3L2 Missense_Mutation p.I238T 0.38 deleterious(0) possibly_damaging(0.616) TCGA-LK-A4O7-01 2 85198508 85198508 C T KCMF1 5'UTR 0.41 TCGA-LK-A4O7-01 2 97285199 97285199 C G KANSL3 Missense_Mutation p.W187S 0.29 deleterious(0) probably_damaging(0.999) TCGA-LK-A4O7-01 3 130095673 130095673 A T COL6A5 Missense_Mutation p.M221L 0.83 tolerated(0.61) benign(0) TCGA-LK-A4O7-01 3 49899786 49899800 CTTCTTGTCGCCCAG - CAMKV In_Frame_Del p.L8_K12del 0.41 TCGA-LK-A4O7-01 3 52437795 52437795 G A BAP1 Nonsense_Mutation p.Q456* 0.70 TCGA-LK-A4O7-01 4 140307314 140307314 C T NAA15 Missense_Mutation p.P777L 0.70 tolerated(0.05) benign(0.028) TCGA-LK-A4O7-01 5 80376502 80376502 A C RASGRF2 Missense_Mutation p.N352T 0.79 deleterious(0.04) benign(0.167) TCGA-LK-A4O7-01 5 82815527 82815527 C T VCAN Missense_Mutation p.H468Y 0.36 tolerated(0.08) benign(0.003) TCGA-LK-A4O7-01 6 170893507 170893507 C T PDCD2 Missense_Mutation p.G55S 0.56 tolerated(0.58) benign(0.027) TCGA-LK-A4O7-01 6 39313491 39313491 G C KIF6 Missense_Mutation p.T769S 0.46 tolerated(0.96) benign(0.001) TCGA-LK-A4O7-01 7 31862837 31862837 C T PDE1C Missense_Mutation p.A538T 0.39 tolerated(0.58) benign(0.004) TCGA-LK-A4O7-01 7 69064861 69064861 G T AUTS2 Silent p.R74R 0.36 TCGA-LK-A4O7-01 8 125487415 125487415 T G RNF139 Missense_Mutation p.L22R 0.40 deleterious(0) probably_damaging(0.958) TCGA-LK-A4O7-01 8 143831642 143831642 G A LYPD2 3'UTR 0.50 TCGA-LK-A4O7-01 9 73205972 73205972 C T TRPM3 Silent p.G1054G 0.42 TCGA-MQ-A4KX-01 10 71139817 71139817 G C HK1 Missense_Mutation p.G415R 0.11 deleterious(0.01) possibly_damaging(0.905) TCGA-MQ-A4KX-01 11 94759070 94759070 G C KDM4E Missense_Mutation p.D117H 0.20 deleterious(0) probably_damaging(0.988) TCGA-MQ-A4KX-01 12 111342496 111342496 C A CCDC63 Missense_Mutation p.P483T 0.11 deleterious(0) probably_damaging(1) TCGA-MQ-A4KX-01 12 113824889 113824889 G C PLBD2 Silent p.L478L 0.14 TCGA-MQ-A4KX-01 15 83349453 83349453 C T AP3B2 Missense_Mutation p.E276K 0.15 tolerated(0.16) benign(0.168) TCGA-MQ-A4KX-01 17 2310387 2310387 A G AC006435.1 Missense_Mutation p.S129P 0.17 unknown(0) TCGA-MQ-A4KX-01 17 3968095 3968095 T C ZZEF1 Silent p.L1426L 0.33 TCGA-MQ-A4KX-01 19 46522861 46522861 C A PGLYRP1 Missense_Mutation p.W111L 0.25 deleterious(0) probably_damaging(1) TCGA-MQ-A4KX-01 19 9046528 9046528 A C MUC16 Silent p.V11701V 0.05 TCGA-MQ-A4KX-01 1 210001421 210001421 G T DIEXF Missense_Mutation p.G5W 0.22 deleterious_low_confidence(0.03) possibly_damaging(0.523) TCGA-MQ-A4KX-01 1 36748267 36748267 C T THRAP3 Nonsense_Mutation p.R35* 0.06 TCGA-MQ-A4KX-01 20 43933081 43933081 T G MATN4 Missense_Mutation p.I144L 0.17 benign(0.292) TCGA-MQ-A4KX-01 22 26895448 26895448 C A TFIP11 Silent p.L317L 0.06 TCGA-MQ-A4KX-01 2 118677974 118677974 T G CCDC93 Splice_Site p.X615_splice 0.23 TCGA-MQ-A4KX-01 2 178299109 178299109 C T AGPS Silent p.T135T 0.20 TCGA-MQ-A4KX-01 2 189929749 189929749 T A COL5A2 Missense_Mutation p.D533V 0.24 probably_damaging(0.958) TCGA-MQ-A4KX-01 3 121489249 121489249 C G IQCB1 Missense_Mutation p.K580N 0.15 tolerated(0.13) possibly_damaging(0.448) TCGA-MQ-A4KX-01 3 185190909 185190909 G A MAP3K13 Missense_Mutation p.G597D 0.29 deleterious(0.01) probably_damaging(1) TCGA-MQ-A4KX-01 3 32932739 32932739 G A TRIM71 Silent p.T681T 0.15 TCGA-MQ-A4KX-01 3 52442078 52442078 A C BAP1 Missense_Mutation p.C91G 0.25 deleterious(0) probably_damaging(0.979) TCGA-MQ-A4KX-01 4 187195474 187195474 T A F11 Intron 0.31 TCGA-MQ-A4KX-01 4 22737706 22737706 G A GBA3 Missense_Mutation p.G54D 0.20 tolerated(1) probably_damaging(0.934) TCGA-MQ-A4KX-01 5 137655016 137655016 G A CDC25C Silent p.P169P 0.20 TCGA-MQ-A4KX-01 6 39851737 39851737 G A DAAM2 Splice_Site p.X616_splice 0.13 TCGA-MQ-A4KX-01 7 142131560 142131560 G T TRBV5-6 Silent p.I65I 0.14 TCGA-MQ-A4KX-01 8 27931899 27931899 T A NUGGC Missense_Mutation p.Q10L 0.14 tolerated_low_confidence(0.28) benign(0.001) TCGA-MQ-A4KX-01 X 149102107 149102107 C T CXorf40B 5'UTR 0.37 TCGA-MQ-A4KX-01 X 73961991 73961991 C G KIAA2022 Missense_Mutation p.A801P 0.30 tolerated(0.13) benign(0.021) TCGA-MQ-A4KX-01 X 9656191 9656191 G A TBL1X Silent p.A164A 0.34 TCGA-MQ-A4LC-01 10 75567714 75567714 T G NDST2 Missense_Mutation p.K145Q 0.24 deleterious(0.01) probably_damaging(0.986) TCGA-MQ-A4LC-01 11 130784641 130784641 A C SNX19 Missense_Mutation p.I398M 0.05 tolerated(0.12) benign(0.379) TCGA-MQ-A4LC-01 11 46727393 46727393 G T ZNF408 Nonsense_Mutation p.E715* 0.38 TCGA-MQ-A4LC-01 11 7110852 7110852 G A RBMXL2 Silent p.S167S 0.33 TCGA-MQ-A4LC-01 12 113549959 113549959 C T RASAL1 Missense_Mutation p.A436T 0.28 tolerated(0.23) benign(0.005) TCGA-MQ-A4LC-01 12 124069211 124069211 C G TMED2 Missense_Mutation p.L10V 0.39 tolerated(0.35) unknown(0) TCGA-MQ-A4LC-01 12 133235962 133235962 C A POLE Missense_Mutation p.G1065V 0.30 deleterious(0) probably_damaging(1) TCGA-MQ-A4LC-01 16 775245 775245 C T CCDC78 Missense_Mutation p.G162R 0.29 tolerated(0.09) probably_damaging(0.99) TCGA-MQ-A4LC-01 17 27380535 27380535 A C PIPOX Missense_Mutation p.Q194H 0.38 tolerated(0.13) benign(0.005) TCGA-MQ-A4LC-01 17 36483395 36483395 A G GPR179 Silent p.C2019C 0.06 TCGA-MQ-A4LC-01 19 1026653 1026653 C T CNN2 5'UTR 0.45 TCGA-MQ-A4LC-01 20 17950526 17950526 C T MGME1 Silent p.T8T 0.12 TCGA-MQ-A4LC-01 20 3581624 3581624 C T ATRN Missense_Mutation p.A1199V 0.23 deleterious(0.02) possibly_damaging(0.742) TCGA-MQ-A4LC-01 2 220502417 220502417 C T SLC4A3 Missense_Mutation p.P911S 0.30 tolerated(0.76) benign(0.046) TCGA-MQ-A4LC-01 2 231282320 231282320 G A SP100 Missense_Mutation p.C16Y 0.14 deleterious_low_confidence(0) benign(0.03) TCGA-MQ-A4LC-01 2 239007890 239007890 G A SCLY 3'UTR 0.31 TCGA-MQ-A4LC-01 2 242289566 242289566 G A SEPT2 Missense_Mutation p.G355R 0.27 deleterious_low_confidence(0.01) unknown(0) TCGA-MQ-A4LC-01 3 111432800 111432800 C T PLCXD2 Missense_Mutation p.P231S 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-MQ-A4LC-01 3 20113902 20113904 AAT - KAT2B In_Frame_Del p.I129del 0.29 TCGA-MQ-A4LC-01 4 183522141 183522141 C T TENM3 Silent p.H192H 0.33 TCGA-MQ-A4LC-01 4 22389714 22389714 C T GPR125 Missense_Mutation p.V1194I 0.34 tolerated(0.5) benign(0.024) TCGA-MQ-A4LC-01 4 80328278 80328278 G T GK2 Nonsense_Mutation p.Y359* 0.38 TCGA-MQ-A4LC-01 5 74325182 74325182 A T GCNT4 Nonsense_Mutation p.C227* 0.26 TCGA-MQ-A4LC-01 6 52999119 52999119 C T GCM1 Missense_Mutation p.V27M 0.30 deleterious(0) probably_damaging(0.994) TCGA-MQ-A4LC-01 6 74363735 74363735 C T SLC17A5 5'UTR 0.55 TCGA-MQ-A4LC-01 7 100420180 100420180 A C EPHB4 Missense_Mutation p.F174C 0.17 deleterious(0) probably_damaging(0.985) TCGA-MQ-A4LC-01 7 76828832 76828832 C G FGL2 Missense_Mutation p.K93N 0.30 deleterious(0) possibly_damaging(0.493) TCGA-MQ-A4LC-01 9 130716185 130716185 A C FAM102A Missense_Mutation p.C56G 0.27 deleterious(0) benign(0.247) TCGA-MQ-A4LI-01 10 103869227 103869227 G A LDB1 Missense_Mutation p.S257L 0.09 deleterious(0) probably_damaging(0.989) TCGA-MQ-A4LI-01 10 104122336 104122336 C T GBF1 Silent p.V596V 0.23 TCGA-MQ-A4LI-01 10 13743340 13743340 C A FRMD4A Missense_Mutation p.K325N 0.29 deleterious(0) probably_damaging(0.999) TCGA-MQ-A4LI-01 10 37508768 37508768 C A ANKRD30A Nonsense_Mutation p.Y1320* 0.38 TCGA-MQ-A4LI-01 10 48429353 48429353 G A GDF10 Missense_Mutation p.S178L 0.39 tolerated(0.19) benign(0.016) TCGA-MQ-A4LI-01 10 98303911 98303911 C T TM9SF3 Missense_Mutation p.M369I 0.35 tolerated(0.36) benign(0.002) TCGA-MQ-A4LI-01 10 98766355 98766355 G A SLIT1 Missense_Mutation p.P1155L 0.29 deleterious(0) possibly_damaging(0.894) TCGA-MQ-A4LI-01 11 10328064 10328064 G A ADM Missense_Mutation p.G145D 0.49 deleterious(0) probably_damaging(1) TCGA-MQ-A4LI-01 11 1093499 1093499 C A MUC2 Missense_Mutation p.T1773N 0.20 unknown(0) TCGA-MQ-A4LI-01 11 1093500 1093500 C A MUC2 Silent p.T1773T 0.20 TCGA-MQ-A4LI-01 11 120351052 120351052 G A ARHGEF12 Missense_Mutation p.A1384T 0.37 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-MQ-A4LI-01 11 20181768 20181768 C T DBX1 Missense_Mutation p.G35S 0.29 tolerated(0.26) benign(0.042) TCGA-MQ-A4LI-01 11 27114843 27114843 G A BBOX1 Missense_Mutation p.A155T 0.31 tolerated(0.06) probably_damaging(0.983) TCGA-MQ-A4LI-01 11 46890672 46890672 C T LRP4 Nonsense_Mutation p.W1568* 0.39 TCGA-MQ-A4LI-01 12 101755803 101755803 G A UTP20 Missense_Mutation p.G1919R 0.38 deleterious(0.01) possibly_damaging(0.636) TCGA-MQ-A4LI-01 12 44199712 44199712 T G TWF1 Intron 0.37 TCGA-MQ-A4LI-01 12 80083891 80083891 C - PAWR Frame_Shift_Del p.G45Afs*45 0.27 TCGA-MQ-A4LI-01 14 36194280 36194280 C T RALGAPA1 Missense_Mutation p.G606R 0.57 deleterious(0.02) probably_damaging(0.964) TCGA-MQ-A4LI-01 16 89643962 89643962 G A CPNE7 Missense_Mutation p.V64M 0.77 tolerated(0.08) possibly_damaging(0.656) TCGA-MQ-A4LI-01 18 50432613 50432613 G A DCC Silent p.P204P 0.55 TCGA-MQ-A4LI-01 19 861818 861818 G A CFD Silent p.A159A 0.45 TCGA-MQ-A4LI-01 1 215901719 215901719 C A USH2A Missense_Mutation p.A3907S 0.34 benign(0.097) TCGA-MQ-A4LI-01 1 220826587 220826587 T C MARK1 Silent p.Y627Y 0.26 TCGA-MQ-A4LI-01 1 228476373 228476373 G C OBSCN Missense_Mutation p.E3804Q 0.53 probably_damaging(0.998) TCGA-MQ-A4LI-01 1 237617836 237617836 C T RYR2 Nonsense_Mutation p.R480* 0.23 TCGA-MQ-A4LI-01 1 244582210 244582217 TAAGTCCC - ADSS Splice_Site p.X264_splice 0.26 TCGA-MQ-A4LI-01 1 70876978 70876978 C T CTH 5'UTR 0.54 TCGA-MQ-A4LI-01 20 31375120 31375120 G T DNMT3B Missense_Mutation p.D173Y 0.30 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-MQ-A4LI-01 21 41719627 41719627 C T DSCAM Missense_Mutation p.A394T 0.30 tolerated(0.13) benign(0.272) TCGA-MQ-A4LI-01 2 183943642 183943642 T C DUSP19 5'UTR 0.17 TCGA-MQ-A4LI-01 2 208615824 208615824 A G CCNYL1 Missense_Mutation p.E266G 0.43 deleterious(0) benign(0.328) TCGA-MQ-A4LI-01 2 27165589 27165589 G A DPYSL5 Missense_Mutation p.V471I 0.38 tolerated(0.16) benign(0.004) TCGA-MQ-A4LI-01 3 129214368 129214368 C T IFT122 Missense_Mutation p.A760V 0.08 deleterious(0) probably_damaging(1) TCGA-MQ-A4LI-01 3 149087459 149087462 AAAC - TM4SF1 3'UTR 0.57 TCGA-MQ-A4LI-01 3 48717651 48717651 C T NCKIPSD Missense_Mutation p.M368I 0.22 tolerated(0.2) benign(0) TCGA-MQ-A4LI-01 4 2073950 2073950 G A POLN Missense_Mutation p.P865L 0.60 deleterious(0.03) benign(0.011) TCGA-MQ-A4LI-01 4 70721084 70721084 C A SULT1E1 Missense_Mutation p.C69F 0.12 deleterious(0) probably_damaging(1) TCGA-MQ-A4LI-01 5 16179742 16179742 G A MARCH11 5'UTR 0.50 TCGA-MQ-A4LI-01 5 71516684 71516684 C G MRPS27 3'UTR 0.35 TCGA-MQ-A4LI-01 5 850852 850852 C G ZDHHC11 5'UTR 0.43 TCGA-MQ-A4LI-01 6 101090583 101090583 T A ASCC3 Missense_Mutation p.I1259F 0.19 deleterious(0.03) probably_damaging(0.989) TCGA-MQ-A4LI-01 6 112460370 112460370 T A LAMA4 Missense_Mutation p.E1078D 0.38 tolerated(0.1) probably_damaging(0.997) TCGA-MQ-A4LI-01 6 116938331 116938331 A T RSPH4A Missense_Mutation p.Q182L 0.26 deleterious_low_confidence(0.03) benign(0.01) TCGA-MQ-A4LI-01 6 152651225 152651225 T A SYNE1 Missense_Mutation p.L4865F 0.41 possibly_damaging(0.86) TCGA-MQ-A4LI-01 6 27107208 27107208 C T HIST1H4I Missense_Mutation p.R41C 0.39 deleterious_low_confidence(0.03) probably_damaging(0.989) TCGA-MQ-A4LI-01 6 38851750 38851750 T C DNAH8 Silent p.P2528P 0.39 TCGA-MQ-A4LI-01 9 99691252 99691253 - T NUTM2G 5'Flank 0.39 TCGA-MQ-A4LJ-01 10 5936420 5936420 G C FBXO18 5'UTR 0.32 TCGA-MQ-A4LJ-01 10 89550073 89550073 G A ATAD1 Missense_Mutation p.P126S 0.47 deleterious(0) probably_damaging(1) TCGA-MQ-A4LJ-01 11 606516 606516 T A PHRF1 Missense_Mutation p.L509Q 0.29 deleterious(0) probably_damaging(1) TCGA-MQ-A4LJ-01 12 123714893 123714893 C G C12orf65 5'Flank 0.30 TCGA-MQ-A4LJ-01 12 50189207 50189209 GTG A NCKAP5L Frame_Shift_Del p.H812* 0.37 TCGA-MQ-A4LJ-01 12 7640676 7640676 C T CD163 Silent p.R476R 0.34 TCGA-MQ-A4LJ-01 16 20788869 20788869 G C ACSM3 Missense_Mutation p.R202T 0.14 deleterious(0) possibly_damaging(0.572) TCGA-MQ-A4LJ-01 16 71483332 71483332 G A ZNF23 Missense_Mutation p.S199L 0.58 tolerated(0.09) benign(0.005) TCGA-MQ-A4LJ-01 17 25904633 25904633 C T KSR1 Missense_Mutation p.A26V 0.39 deleterious(0) benign(0.362) TCGA-MQ-A4LJ-01 17 56389764 56389764 G A BZRAP1 Silent p.S806S 0.08 TCGA-MQ-A4LJ-01 19 45895147 45895147 C A PPP1R13L Silent p.P602P 0.37 TCGA-MQ-A4LJ-01 19 56382258 56382258 A G NLRP4 Missense_Mutation p.K807R 0.37 tolerated(0.35) benign(0.03) TCGA-MQ-A4LJ-01 2 136545957 136545957 C T LCT Silent p.K1907K 0.22 TCGA-MQ-A4LJ-01 2 33245989 33245989 G A LTBP1 Silent p.P193P 0.12 TCGA-MQ-A4LJ-01 2 97274703 97274703 G C KANSL3 Silent p.P494P 0.34 TCGA-MQ-A4LJ-01 3 132196734 132196734 A T DNAJC13 Missense_Mutation p.R849S 0.31 tolerated(0.32) benign(0.017) TCGA-MQ-A4LJ-01 3 151102968 151102968 G A MED12L Missense_Mutation p.D1658N 0.38 tolerated(0.1) probably_damaging(0.947) TCGA-MQ-A4LJ-01 3 44598746 44598746 G C ZKSCAN7 Missense_Mutation p.Q69H 0.32 tolerated(0.07) probably_damaging(0.999) TCGA-MQ-A4LJ-01 4 106111652 106111652 C T TET2 Intron 0.43 TCGA-MQ-A4LJ-01 4 85758111 85758111 G A WDFY3 Nonsense_Mutation p.R183* 0.28 TCGA-MQ-A4LJ-01 5 167420012 167420012 C - TENM2 Frame_Shift_Del p.P338Lfs*2 0.25 TCGA-MQ-A4LJ-01 6 126332399 126332399 G A TRMT11 Missense_Mutation p.G254E 0.24 deleterious(0.01) probably_damaging(0.956) TCGA-MQ-A4LJ-01 6 28403276 28403276 C A ZSCAN23 Missense_Mutation p.G173W 0.28 deleterious(0.03) benign(0.013) TCGA-MQ-A4LJ-01 6 90572091 90572110 CTGCACTAATGGTGTTTGGT - CASP8AP2 RNA 0.30 TCGA-MQ-A4LJ-01 7 126883190 126883190 C A GRM8 Missense_Mutation p.W23C 0.31 deleterious(0.01) benign(0.087) TCGA-MQ-A4LJ-01 7 138344648 138344648 C T SVOPL Missense_Mutation p.R144Q 0.32 deleterious(0.02) possibly_damaging(0.78) TCGA-MQ-A4LJ-01 7 15726227 15726227 G A MEOX2 5'UTR 0.24 TCGA-MQ-A4LJ-01 9 130494367 130494367 G T TOR2A Silent p.L304L 0.30 TCGA-MQ-A4LJ-01 9 74586509 74586509 G T C9orf85 Nonsense_Mutation p.G100* 0.36 TCGA-MQ-A4LM-01 10 31816335 31816335 T A ZEB1 3'UTR 0.50 TCGA-MQ-A4LM-01 11 610244 610244 T G PHRF1 Missense_Mutation p.M1437R 0.11 deleterious(0.01) benign(0) TCGA-MQ-A4LM-01 11 62369802 62369802 G A EML3 3'UTR 0.16 TCGA-MQ-A4LM-01 12 72050975 72050982 TATTTGTT - ZFC3H1 Frame_Shift_Del p.K233Tfs*9 0.31 TCGA-MQ-A4LM-01 12 91545560 91545560 C T DCN Silent p.L252L 0.16 TCGA-MQ-A4LM-01 12 96350671 96350671 T C AMDHD1 Missense_Mutation p.I173T 0.21 deleterious(0) probably_damaging(0.978) TCGA-MQ-A4LM-01 12 99060037 99060038 TC - APAF1 Frame_Shift_Del p.L423Ffs*4 0.14 TCGA-MQ-A4LM-01 13 21562298 21562298 C A LATS2 Nonsense_Mutation p.E541* 0.20 TCGA-MQ-A4LM-01 13 51918504 51918504 C G SERPINE3 Missense_Mutation p.P125A 0.22 deleterious(0.04) possibly_damaging(0.491) TCGA-MQ-A4LM-01 13 72053448 72053448 C G DACH1 Missense_Mutation p.G577R 0.12 probably_damaging(0.995) TCGA-MQ-A4LM-01 14 21550596 21550596 G C ARHGEF40 Missense_Mutation p.A1149P 0.18 deleterious(0.05) possibly_damaging(0.546) TCGA-MQ-A4LM-01 14 37283167 37283167 A G SLC25A21 Silent p.Y53Y 0.17 TCGA-MQ-A4LM-01 15 40590839 40590839 C A PLCB2 Missense_Mutation p.K307N 0.07 deleterious(0.03) possibly_damaging(0.561) TCGA-MQ-A4LM-01 15 50931700 50931700 C T TRPM7 Missense_Mutation p.R194K 0.14 tolerated(0.76) benign(0.011) TCGA-MQ-A4LM-01 15 98995111 98995111 G A FAM169B Missense_Mutation p.P105S 0.15 tolerated(0.77) benign(0.027) TCGA-MQ-A4LM-01 17 42255124 42255124 G A ASB16 Intron 0.12 TCGA-MQ-A4LM-01 17 4619921 4619921 C T ARRB2 Silent p.P125P 0.23 TCGA-MQ-A4LM-01 19 22940768 22940768 G A ZNF99 Missense_Mutation p.P648L 0.10 tolerated(0.05) probably_damaging(0.966) TCGA-MQ-A4LM-01 19 23405213 23405213 G A ZNF724P Missense_Mutation p.H612Y 0.18 tolerated(0.07) benign(0.211) TCGA-MQ-A4LM-01 19 2515079 2515079 C G GNG7 Missense_Mutation p.V50L 0.13 tolerated(0.06) benign(0.051) TCGA-MQ-A4LM-01 19 31040264 31040264 G A ZNF536 Silent p.A1246A 0.12 TCGA-MQ-A4LM-01 19 49611459 49611459 A G SNRNP70 Missense_Mutation p.H358R 0.20 tolerated_low_confidence(0.37) unknown(0) TCGA-MQ-A4LM-01 19 6743221 6743221 G A TRIP10 Missense_Mutation p.R121Q 0.12 deleterious(0.01) benign(0.3) TCGA-MQ-A4LM-01 19 9015723 9015723 C G MUC16 Silent p.P12700P 0.16 TCGA-MQ-A4LM-01 1 153391758 153391758 G A S100A7A Silent p.A93A 0.12 TCGA-MQ-A4LM-01 1 155295386 155295386 G A RUSC1 Silent p.L579L 0.19 TCGA-MQ-A4LM-01 1 207753732 207753732 A T CR1 Missense_Mutation p.D1695V 0.14 deleterious(0) possibly_damaging(0.595) TCGA-MQ-A4LM-01 1 226829621 226829621 C A ITPKB Splice_Site p.X817_splice 0.13 TCGA-MQ-A4LM-01 1 32828278 32828278 T G TSSK3 5'UTR 0.22 TCGA-MQ-A4LM-01 1 54605373 54605373 C T CDCP2 Silent p.Q390Q 0.21 TCGA-MQ-A4LM-01 20 60886118 60886118 C G LAMA5 Missense_Mutation p.S3374T 0.12 possibly_damaging(0.796) TCGA-MQ-A4LM-01 22 29193116 29193116 T A XBP1 Missense_Mutation p.R134S 0.22 deleterious(0) possibly_damaging(0.787) TCGA-MQ-A4LM-01 22 30070871 30070871 G T NF2 Nonsense_Mutation p.E463* 0.19 TCGA-MQ-A4LM-01 2 163137964 163137964 C A IFIH1 Missense_Mutation p.L466F 0.16 tolerated(0.23) benign(0.173) TCGA-MQ-A4LM-01 2 242194866 242194867 - T HDLBP Frame_Shift_Ins p.D335Rfs*5 0.12 TCGA-MQ-A4LM-01 2 64685443 64685443 C T LGALSL Missense_Mutation p.R134C 0.06 deleterious(0.04) benign(0.184) TCGA-MQ-A4LM-01 2 96949671 96949671 C A SNRNP200 Silent p.V1488V 0.19 TCGA-MQ-A4LM-01 3 142144277 142144277 G A XRN1 Silent p.G170G 0.16 TCGA-MQ-A4LM-01 4 88036255 88036255 C T AFF1 Missense_Mutation p.S757L 0.22 deleterious(0.01) unknown(0) TCGA-MQ-A4LM-01 5 140573094 140573094 C T PCDHB10 Silent p.D323D 0.16 TCGA-MQ-A4LM-01 5 44809402 44809402 T G MRPS30 Missense_Mutation p.V113G 0.16 deleterious(0) possibly_damaging(0.661) TCGA-MQ-A4LM-01 5 44809403 44809403 G T MRPS30 Silent p.V113V 0.16 TCGA-MQ-A4LM-01 5 92956654 92956662 GGTGCGCCA - FAM172A 3'UTR 0.31 TCGA-MQ-A4LM-01 6 134528520 134528520 C T SGK1 Missense_Mutation p.R112K 0.18 tolerated(0.49) benign(0.02) TCGA-MQ-A4LM-01 6 13814530 13814530 C G MCUR1 Silent p.A44A 0.14 TCGA-MQ-A4LM-01 6 30078364 30078364 C T TRIM31 Missense_Mutation p.R202Q 0.20 tolerated(0.14) benign(0.016) TCGA-MQ-A4LM-01 6 31783565 31783565 T C HSPA1A Missense_Mutation p.L11P 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-MQ-A4LM-01 7 74211549 74211549 T A GTF2IRD2 Missense_Mutation p.I768F 0.16 deleterious(0.05) benign(0.101) TCGA-MQ-A4LM-01 8 94794654 94794654 C A TMEM67 Missense_Mutation p.A366D 0.10 deleterious(0) probably_damaging(0.991) TCGA-MQ-A4LM-01 9 125239974 125239974 C T OR1J1 Missense_Mutation p.V78I 0.30 tolerated_low_confidence(0.12) benign(0.017) TCGA-MQ-A4LM-01 9 36840635 36840635 T G PAX5 Splice_Site p.X367_splice 0.09 TCGA-MQ-A4LM-01 9 990855 990855 C T DMRT3 Silent p.P423P 0.12 TCGA-MQ-A4LP-01 11 14479360 14479360 T G COPB1 3'UTR 0.80 TCGA-MQ-A4LP-01 11 18754214 18754214 C T PTPN5 Silent p.A418A 0.24 TCGA-MQ-A4LP-01 11 7273474 7273474 C T SYT9 Silent p.L19L 0.79 TCGA-MQ-A4LP-01 12 102046528 102046528 C T MYBPC1 Silent p.Y508Y 0.39 TCGA-MQ-A4LP-01 12 102224542 102224542 G A GNPTAB 5'UTR 0.27 TCGA-MQ-A4LP-01 12 27849564 27849564 G T REP15 Silent p.V23V 0.33 TCGA-MQ-A4LP-01 12 33579199 33579199 T G SYT10 Missense_Mutation p.E128A 0.36 deleterious(0.03) probably_damaging(0.992) TCGA-MQ-A4LP-01 12 53580237 53580237 C T ZNF740 Missense_Mutation p.R146C 0.32 deleterious(0) benign(0) TCGA-MQ-A4LP-01 12 54756437 54756437 T C GPR84 3'UTR 0.12 TCGA-MQ-A4LP-01 12 68549202 68549202 C T IFNG Silent p.S144S 0.45 TCGA-MQ-A4LP-01 13 40175074 40175074 C G LHFP Missense_Mutation p.G94R 0.36 deleterious(0.02) probably_damaging(1) TCGA-MQ-A4LP-01 13 48547412 48547412 T C SUCLA2 Missense_Mutation p.E217G 0.33 deleterious(0.03) benign(0.073) TCGA-MQ-A4LP-01 14 104136589 104136589 T C KLC1 Missense_Mutation p.L319S 0.41 deleterious(0.02) probably_damaging(0.997) TCGA-MQ-A4LP-01 14 104643363 104643363 C G KIF26A Missense_Mutation p.P1413R 0.48 tolerated(0.05) benign(0.091) TCGA-MQ-A4LP-01 14 50074287 50074287 A G LRR1 Missense_Mutation p.N151S 0.34 tolerated(0.48) benign(0.009) TCGA-MQ-A4LP-01 15 73566270 73566270 C G NEO1 Nonsense_Mutation p.Y1028* 0.43 TCGA-MQ-A4LP-01 15 78927783 78927783 C T CHRNB4 Missense_Mutation p.V68M 0.38 deleterious(0.05) probably_damaging(0.965) TCGA-MQ-A4LP-01 16 2029532 2029532 A T NOXO1 Missense_Mutation p.C243S 0.29 tolerated(0.27) possibly_damaging(0.719) TCGA-MQ-A4LP-01 16 58436999 58436999 C T GINS3 Intron 0.30 TCGA-MQ-A4LP-01 16 67997953 67997953 T C SLC12A4 Intron 0.69 TCGA-MQ-A4LP-01 16 86565694 86565694 C T MTHFSD Missense_Mutation p.V359I 0.22 tolerated(0.42) benign(0.021) TCGA-MQ-A4LP-01 17 1584247 1584247 A C PRPF8 Missense_Mutation p.L323R 0.38 tolerated(0.58) benign(0.001) TCGA-MQ-A4LP-01 17 15961859 15961859 G A NCOR1 Missense_Mutation p.A1979V 0.25 probably_damaging(0.993) TCGA-MQ-A4LP-01 17 28443833 28443833 C T NSRP1 5'UTR 0.33 TCGA-MQ-A4LP-01 17 5087486 5087486 T C ZNF594 Silent p.E22E 0.39 TCGA-MQ-A4LP-01 17 74621954 74621954 G A ST6GALNAC1 Missense_Mutation p.R518C 0.31 probably_damaging(1) TCGA-MQ-A4LP-01 18 21390385 21390385 A G LAMA3 Silent p.G553G 0.36 TCGA-MQ-A4LP-01 18 44775182 44775182 G A SKOR2 Missense_Mutation p.R125C 0.34 probably_damaging(1) TCGA-MQ-A4LP-01 19 22847821 22847821 A T ZNF492 Missense_Mutation p.K450N 0.29 deleterious(0.01) probably_damaging(0.945) TCGA-MQ-A4LP-01 19 47920901 47920901 G A MEIS3 Intron 0.32 TCGA-MQ-A4LP-01 19 55798588 55798588 C T BRSK1 Missense_Mutation p.R80W 0.24 deleterious(0) probably_damaging(0.962) TCGA-MQ-A4LP-01 1 110586449 110586449 C G STRIP1 Silent p.P419P 0.38 TCGA-MQ-A4LP-01 1 145439007 145439007 T C TXNIP Missense_Mutation p.Y69H 0.42 deleterious(0.01) probably_damaging(0.995) TCGA-MQ-A4LP-01 1 179399648 179399648 A T AXDND1 Missense_Mutation p.K465I 0.42 deleterious(0.02) possibly_damaging(0.902) TCGA-MQ-A4LP-01 1 186273976 186273978 TCT - PRG4 In_Frame_Del p.S177del 0.32 TCGA-MQ-A4LP-01 1 24975398 24975398 G A SRRM1 Missense_Mutation p.G95R 0.32 probably_damaging(1) TCGA-MQ-A4LP-01 20 33364114 33364114 G A NCOA6 Missense_Mutation p.L125F 0.39 probably_damaging(0.999) TCGA-MQ-A4LP-01 20 33855077 33855077 C T MMP24 Missense_Mutation p.P350L 0.05 deleterious(0.02) benign(0.026) TCGA-MQ-A4LP-01 20 35796605 35796605 A G MROH8 Silent p.S216S 0.40 TCGA-MQ-A4LP-01 20 6033183 6033183 C G LRRN4 Missense_Mutation p.R88P 0.26 tolerated(0.13) possibly_damaging(0.835) TCGA-MQ-A4LP-01 2 108999659 108999659 T G SULT1C4 Silent p.T168T 0.28 TCGA-MQ-A4LP-01 2 70900052 70900052 C T ADD2 Missense_Mutation p.E610K 0.39 tolerated(0.82) benign(0.031) TCGA-MQ-A4LP-01 2 97361544 97361544 C T FER1L5 RNA 0.36 TCGA-MQ-A4LP-01 2 9770526 9770526 T C YWHAQ Missense_Mutation p.Y19C 0.58 deleterious_low_confidence(0) probably_damaging(1) TCGA-MQ-A4LP-01 3 124733851 124733851 C - HEG1 Intron 0.12 TCGA-MQ-A4LP-01 4 104640867 104640867 A T TACR3 5'UTR 0.69 TCGA-MQ-A4LP-01 4 49005768 49005768 G A CWH43 Silent p.A273A 0.81 TCGA-MQ-A4LP-01 5 14290965 14290965 C T TRIO Silent p.A227A 0.16 TCGA-MQ-A4LP-01 5 16616867 16616867 G A FAM134B Missense_Mutation p.L72F 0.65 tolerated(0.1) benign(0.002) TCGA-MQ-A4LP-01 5 36268346 36268346 T - RANBP3L Frame_Shift_Del p.M98* 0.41 TCGA-MQ-A4LP-01 6 106553011 106553011 C T PRDM1 Missense_Mutation p.R326C 0.33 deleterious(0.02) benign(0.339) TCGA-MQ-A4LP-01 6 152651071 152651071 G A SYNE1 Silent p.L4917L 0.75 TCGA-MQ-A4LP-01 7 102715756 102715756 G A ARMC10 Missense_Mutation p.G13S 0.38 deleterious(0.01) possibly_damaging(0.905) TCGA-MQ-A4LP-01 7 103032125 103032125 T C SLC26A5 Missense_Mutation p.I393V 0.42 tolerated(1) probably_damaging(0.986) TCGA-MQ-A4LP-01 7 104749468 104749468 G C KMT2E Missense_Mutation p.S1183T 0.23 tolerated_low_confidence(1) benign(0) TCGA-MQ-A4LP-01 7 27880328 27880328 T A JAZF1 Nonsense_Mutation p.K182* 0.27 TCGA-MQ-A4LP-01 8 100732610 100732610 T - VPS13B Frame_Shift_Del p.L2258Yfs*59 0.30 TCGA-MQ-A4LP-01 8 110376830 110376830 T G PKHD1L1 Missense_Mutation p.I43R 0.49 deleterious(0.03) possibly_damaging(0.625) TCGA-MQ-A4LP-01 8 36641947 36641947 C T KCNU1 Nonsense_Mutation p.R7* 0.37 TCGA-MQ-A4LP-01 9 111618129 111618129 C T ACTL7B Missense_Mutation p.A28T 0.16 tolerated(0.18) benign(0.002) TCGA-MQ-A4LP-01 9 117092267 117092267 C T ORM2 Missense_Mutation p.P28L 0.32 deleterious(0.02) benign(0.11) TCGA-MQ-A4LP-01 9 139944841 139944841 G A ENTPD2 Silent p.H308H 0.41 TCGA-MQ-A4LP-01 9 82323154 82323154 T C TLE4 Missense_Mutation p.V353A 0.33 tolerated(0.65) benign(0.003) TCGA-MQ-A4LP-01 X 104463814 104463814 A G TEX13A Silent p.H354H 0.84 TCGA-MQ-A4LP-01 X 105450748 105450748 A C MUM1L1 Missense_Mutation p.R441S 0.76 deleterious(0) probably_damaging(0.999) TCGA-MQ-A4LP-01 X 114141179 114141179 G C HTR2C Missense_Mutation p.G193A 0.72 deleterious(0) possibly_damaging(0.889) TCGA-MQ-A4LP-01 X 120182902 120182902 C G GLUD2 Missense_Mutation p.T455S 0.50 tolerated(0.24) benign(0.155) TCGA-MQ-A4LV-01 11 17758001 17758001 T C KCNC1 Missense_Mutation p.M151T 0.20 tolerated(0.17) benign(0.117) TCGA-MQ-A4LV-01 11 46896574 46896574 G A LRP4 Missense_Mutation p.P1336S 0.17 deleterious(0) possibly_damaging(0.621) TCGA-MQ-A4LV-01 11 56237604 56237604 T C OR5M3 Missense_Mutation p.I124V 0.05 deleterious(0.02) benign(0.047) TCGA-MQ-A4LV-01 11 66033984 66033984 G A KLC2 Intron 0.23 TCGA-MQ-A4LV-01 12 124303723 124303723 G A DNAH10 Missense_Mutation p.R1191K 0.17 benign(0) TCGA-MQ-A4LV-01 12 133804517 133804517 A G ANHX Missense_Mutation p.S132P 0.15 deleterious(0.02) possibly_damaging(0.616) TCGA-MQ-A4LV-01 12 6230433 6230433 C T VWF Missense_Mutation p.V43I 0.22 tolerated(1) benign(0.002) TCGA-MQ-A4LV-01 13 21557696 21557696 T A LATS2 Missense_Mutation p.R717W 0.28 deleterious(0) probably_damaging(0.998) TCGA-MQ-A4LV-01 14 64727260 64727260 C T ESR2 Missense_Mutation p.A287T 0.12 tolerated(0.19) benign(0.001) TCGA-MQ-A4LV-01 14 89084642 89084642 C G EML5 Missense_Mutation p.E1858Q 0.17 tolerated(0.17) benign(0.087) TCGA-MQ-A4LV-01 15 34528337 34528337 C T SLC12A6 Missense_Mutation p.E1036K 0.21 tolerated(0.73) possibly_damaging(0.766) TCGA-MQ-A4LV-01 15 55664071 55664071 C T CCPG1 Missense_Mutation p.R209H 0.23 tolerated(0.14) benign(0.012) TCGA-MQ-A4LV-01 16 3108571 3108571 G A MMP25 Missense_Mutation p.D440N 0.23 tolerated(0.06) probably_damaging(0.951) TCGA-MQ-A4LV-01 16 50104088 50104088 G T HEATR3 Splice_Site p.X134_splice 0.32 TCGA-MQ-A4LV-01 16 8998323 8998323 C T USP7 Missense_Mutation p.R558Q 0.22 deleterious(0.03) possibly_damaging(0.838) TCGA-MQ-A4LV-01 17 27614591 27614591 C G NUFIP2 Missense_Mutation p.A141P 0.13 tolerated(0.12) possibly_damaging(0.474) TCGA-MQ-A4LV-01 19 12090373 12090373 T - ZNF763 3'UTR 0.16 TCGA-MQ-A4LV-01 19 47424907 47424907 C T ARHGAP35 Missense_Mutation p.S992F 0.15 deleterious(0.01) benign(0.205) TCGA-MQ-A4LV-01 19 48809530 48809530 G A CCDC114 Silent p.T179T 0.14 TCGA-MQ-A4LV-01 19 49377261 49377261 C T PPP1R15A Silent p.P257P 0.15 TCGA-MQ-A4LV-01 19 6784199 6784199 A G VAV1 Intron 0.31 TCGA-MQ-A4LV-01 1 152084707 152084707 T C TCHH Missense_Mutation p.E329G 0.28 unknown(0) TCGA-MQ-A4LV-01 1 152279683 152279683 C G FLG Missense_Mutation p.S2560T 0.26 probably_damaging(0.968) TCGA-MQ-A4LV-01 1 153333142 153333142 T A S100A9 Missense_Mutation p.V58D 0.20 tolerated(0.19) benign(0.001) TCGA-MQ-A4LV-01 1 153333143 153333143 C T S100A9 Silent p.V58V 0.20 TCGA-MQ-A4LV-01 1 161141566 161141566 T A B4GALT3 3'UTR 0.22 TCGA-MQ-A4LV-01 1 20657462 20657462 C T VWA5B1 Missense_Mutation p.R520W 0.18 deleterious(0) probably_damaging(0.973) TCGA-MQ-A4LV-01 1 222743974 222743974 T A TAF1A Missense_Mutation p.Q213L 0.22 deleterious(0) possibly_damaging(0.517) TCGA-MQ-A4LV-01 1 33486983 33486983 C A AK2 Missense_Mutation p.R137L 0.20 deleterious(0.02) benign(0.015) TCGA-MQ-A4LV-01 20 10631009 10631009 C G JAG1 Splice_Site p.X374_splice 0.25 TCGA-MQ-A4LV-01 20 30457917 30457917 G A DUSP15 Intron 0.18 TCGA-MQ-A4LV-01 22 30069372 30069372 A T NF2 Nonsense_Mutation p.K413* 0.24 TCGA-MQ-A4LV-01 2 105858994 105858994 G A GPR45 Missense_Mutation p.V227M 0.12 tolerated(0.28) benign(0.108) TCGA-MQ-A4LV-01 2 135985459 135985459 G C ZRANB3 Missense_Mutation p.P694R 0.18 tolerated(0.06) benign(0.288) TCGA-MQ-A4LV-01 2 228141169 228141169 C T COL4A3 Missense_Mutation p.H666Y 0.17 unknown(0) TCGA-MQ-A4LV-01 2 241621975 241621975 G A AQP12B Missense_Mutation p.P94S 0.19 deleterious(0.04) probably_damaging(0.969) TCGA-MQ-A4LV-01 2 54876854 54876854 G A SPTBN1 Missense_Mutation p.G1769R 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-MQ-A4LV-01 2 99438959 99438959 G A KIAA1211L Missense_Mutation p.R593W 0.17 tolerated(0.18) probably_damaging(0.946) TCGA-MQ-A4LV-01 3 15685917 15685917 G T BTD Missense_Mutation p.R185M 0.24 tolerated(0.12) benign(0.409) TCGA-MQ-A4LV-01 3 182880410 182880410 A G LAMP3 Missense_Mutation p.F12L 0.22 tolerated(0.26) benign(0.002) TCGA-MQ-A4LV-01 3 38180281 38180281 G T MYD88 Silent p.R43R 0.22 TCGA-MQ-A4LV-01 3 38180282 38180282 C T MYD88 Missense_Mutation p.R44C 0.20 deleterious(0.02) possibly_damaging(0.888) TCGA-MQ-A4LV-01 3 47142997 47142997 C A SETD2 Missense_Mutation p.V1656F 0.15 deleterious(0) possibly_damaging(0.876) TCGA-MQ-A4LV-01 3 52443865 52443865 G T BAP1 Missense_Mutation p.S10R 0.42 deleterious(0) probably_damaging(0.999) TCGA-MQ-A4LV-01 6 110763666 110763666 G C SLC22A16 Missense_Mutation p.L322V 0.22 tolerated(0.22) benign(0.196) TCGA-MQ-A4LV-01 6 139226246 139226246 G T REPS1 Silent p.S781S 0.25 TCGA-MQ-A4LV-01 6 41754755 41754755 C T PRICKLE4 Missense_Mutation p.S348L 0.26 deleterious(0) probably_damaging(1) TCGA-MQ-A4LV-01 6 84862484 84862484 T C KIAA1009 Missense_Mutation p.K1137E 0.14 tolerated(0.06) possibly_damaging(0.547) TCGA-MQ-A4LV-01 7 150069880 150069880 G A REPIN1 Missense_Mutation p.C574Y 0.18 deleterious(0) probably_damaging(1) TCGA-MQ-A4LV-01 7 4260945 4260945 C T SDK1 Missense_Mutation p.H1926Y 0.13 tolerated(0.13) benign(0.014) TCGA-MQ-A4LV-01 7 86998704 86998704 G A CROT Missense_Mutation p.R215H 0.22 tolerated(0.38) benign(0.009) TCGA-MQ-A4LV-01 8 145579732 145579732 G A FBXL6 Silent p.D456D 0.20 TCGA-MQ-A4LV-01 8 1719631 1719631 C A CLN8 Silent p.I137I 0.19 TCGA-MQ-A4LV-01 8 38705731 38705731 G T TACC1 3'UTR 0.25 TCGA-MQ-A4LV-01 9 84607701 84607701 T A SPATA31D1 Nonsense_Mutation p.Y772* 0.17 TCGA-MQ-A4LV-01 9 85615828 85615828 C T RASEF Missense_Mutation p.D474N 0.12 deleterious(0.05) benign(0.079) TCGA-MQ-A6BL-01 10 102783351 102783351 G A PDZD7 Silent p.C128C 0.14 TCGA-MQ-A6BL-01 10 121596444 121596444 G A MCMBP Silent p.N504N 0.11 TCGA-MQ-A6BL-01 10 124596423 124596423 C G CUZD1 Missense_Mutation p.L247F 0.04 tolerated(0.44) possibly_damaging(0.889) TCGA-MQ-A6BL-01 10 63983020 63983020 T G RTKN2 Missense_Mutation p.H253P 0.19 deleterious(0) probably_damaging(0.999) TCGA-MQ-A6BL-01 10 74828693 74828693 T G P4HA1 Missense_Mutation p.E125A 0.17 deleterious(0) probably_damaging(0.947) TCGA-MQ-A6BL-01 10 85970883 85970883 G C CDHR1 Missense_Mutation p.E483Q 0.06 deleterious(0) probably_damaging(1) TCGA-MQ-A6BL-01 11 76506693 76506693 G A TSKU Silent p.V11V 0.09 TCGA-MQ-A6BL-01 12 55820281 55820281 A T OR6C76 Missense_Mutation p.I82F 0.16 deleterious_low_confidence(0) possibly_damaging(0.852) TCGA-MQ-A6BL-01 12 57861128 57861128 C T GLI1 Missense_Mutation p.R309W 0.14 deleterious(0.03) probably_damaging(0.998) TCGA-MQ-A6BL-01 13 103387605 103387605 C G CCDC168 Missense_Mutation p.V519L 0.14 tolerated(0.67) benign(0.198) TCGA-MQ-A6BL-01 13 21557525 21557525 C T LATS2 Missense_Mutation p.E774K 0.16 deleterious(0) possibly_damaging(0.747) TCGA-MQ-A6BL-01 14 57748811 57748811 C T AP5M1 Missense_Mutation p.P318L 0.17 deleterious(0) probably_damaging(0.944) TCGA-MQ-A6BL-01 15 78558574 78558574 T C DNAJA4 Intron 0.23 TCGA-MQ-A6BL-01 16 70190853 70190853 T A PDPR 3'UTR 0.08 TCGA-MQ-A6BL-01 17 42169194 42169194 G A HDAC5 Silent p.L347L 0.27 TCGA-MQ-A6BL-01 17 46688041 46688041 G A HOXB7 Silent p.L80L 0.19 TCGA-MQ-A6BL-01 17 73274302 73274302 G A SLC25A19 Nonsense_Mutation p.Q192* 0.20 TCGA-MQ-A6BL-01 17 7481207 7481207 C G EIF4A1 Missense_Mutation p.S323R 0.17 deleterious(0) probably_damaging(0.996) TCGA-MQ-A6BL-01 19 22785658 22785658 C A AC011467.1 3'Flank 0.14 TCGA-MQ-A6BL-01 19 30934714 30934714 C T ZNF536 Missense_Mutation p.A82V 0.14 deleterious_low_confidence(0) benign(0.314) TCGA-MQ-A6BL-01 19 3179217 3179217 C T S1PR4 Missense_Mutation p.R143C 0.19 deleterious(0) probably_damaging(1) TCGA-MQ-A6BL-01 19 3778410 3778410 T A MATK Missense_Mutation p.E433V 0.14 deleterious(0.02) possibly_damaging(0.772) TCGA-MQ-A6BL-01 19 39898741 39898741 A G ZFP36 Missense_Mutation p.H134R 0.11 deleterious(0) probably_damaging(1) TCGA-MQ-A6BL-01 19 40895495 40895495 G A HIPK4 Silent p.F105F 0.10 TCGA-MQ-A6BL-01 1 153410684 153410684 G A S100A7L2 Missense_Mutation p.P52L 0.17 deleterious(0.02) benign(0.001) TCGA-MQ-A6BL-01 1 158669531 158669532 - T OR6K2 Frame_Shift_Ins p.H305Afs*6 0.16 TCGA-MQ-A6BL-01 1 16955044 16955044 T C CROCCP2 3'Flank 0.18 TCGA-MQ-A6BL-01 1 236958724 236958724 G A MTR 5'UTR 0.25 TCGA-MQ-A6BL-01 1 45115663 45115663 C T RNF220 Intron 0.24 TCGA-MQ-A6BL-01 1 75102114 75102114 A - C1orf173 Frame_Shift_Del p.R152Dfs*24 0.22 TCGA-MQ-A6BL-01 20 1961097 1961097 G A PDYN Missense_Mutation p.R213C 0.15 deleterious(0) probably_damaging(1) TCGA-MQ-A6BL-01 2 132914905 132914905 C T ANKRD30BL Missense_Mutation p.E104K 0.19 tolerated(0.2) probably_damaging(0.988) TCGA-MQ-A6BL-01 2 220075762 220075762 G C ABCB6 Silent p.T679T 0.15 TCGA-MQ-A6BL-01 3 130893741 130893741 C T NEK11 Intron 0.23 TCGA-MQ-A6BL-01 3 56655620 56655620 G T CCDC66 Nonsense_Mutation p.E941* 0.19 TCGA-MQ-A6BL-01 4 3129315 3129315 C G HTT Nonsense_Mutation p.S576* 0.13 TCGA-MQ-A6BL-01 4 48553564 48553564 A T FRYL Silent p.A1489A 0.15 TCGA-MQ-A6BL-01 5 167957425 167957425 C A FBLL1 Missense_Mutation p.Q306K 0.14 tolerated(1) benign(0.005) TCGA-MQ-A6BL-01 5 169482355 169482355 G C DOCK2 Missense_Mutation p.R1420S 0.13 tolerated(0.13) benign(0.01) TCGA-MQ-A6BL-01 5 172410873 172410873 C T ATP6V0E1 Missense_Mutation p.H4Y 0.20 tolerated(0.62) benign(0.035) TCGA-MQ-A6BL-01 5 43615972 43615972 C T NNT Missense_Mutation p.P135L 0.09 deleterious(0.02) benign(0.047) TCGA-MQ-A6BL-01 6 100960766 100960772 ACTGGCA - ASCC3 Frame_Shift_Del p.L2033* 0.20 TCGA-MQ-A6BL-01 6 143382077 143382077 C T AIG1 Silent p.P5P 0.26 TCGA-MQ-A6BL-01 6 26199348 26199348 C G HIST1H2AD Missense_Mutation p.E42Q 0.17 tolerated_low_confidence(0.18) benign(0.088) TCGA-MQ-A6BL-01 6 45882069 45882069 C T CLIC5 Missense_Mutation p.A321T 0.16 tolerated(0.19) benign(0.009) TCGA-MQ-A6BL-01 6 55192355 55192355 G A GFRAL Translation_Start_Site p.M1? 0.16 tolerated(0.05) benign(0.005) TCGA-MQ-A6BL-01 7 100850168 100850168 G C PLOD3 Missense_Mutation p.N651K 0.17 deleterious(0.01) benign(0.219) TCGA-MQ-A6BL-01 7 3197861 3197867 ATCCTCT TCCTCC AC091801.1 Missense_Mutation 0.14 TCGA-MQ-A6BL-01 7 4213916 4213916 G C SDK1 Silent p.L1621L 0.20 TCGA-MQ-A6BL-01 7 99103728 99103728 G T ZKSCAN5 Nonsense_Mutation p.E21* 0.14 TCGA-MQ-A6BL-01 8 145278013 145278013 G A MROH1 Silent p.V406V 0.11 TCGA-MQ-A6BL-01 8 146278512 146278512 A T C8orf33 Missense_Mutation p.Q128L 0.16 deleterious(0.01) possibly_damaging(0.894) TCGA-MQ-A6BL-01 8 29923631 29923631 C A TMEM66 Silent p.S289S 0.14 TCGA-MQ-A6BL-01 8 54684706 54684706 C - ATP6V1H Frame_Shift_Del p.E298Kfs*12 0.16 TCGA-MQ-A6BL-01 9 103055231 103055231 C A INVS Missense_Mutation p.L898I 0.23 tolerated_low_confidence(0.47) benign(0.009) TCGA-MQ-A6BL-01 9 127623762 127623762 C T RPL35 Missense_Mutation p.V26M 0.13 tolerated(0.08) possibly_damaging(0.636) TCGA-MQ-A6BL-01 9 135962428 135962428 C T CELP RNA 0.20 TCGA-MQ-A6BL-01 9 7103744 7103744 C T KDM4C Silent p.S828S 0.19 TCGA-MQ-A6BL-01 9 87325556 87325556 C A NTRK2 Missense_Mutation p.L145M 0.28 deleterious(0) probably_damaging(1) TCGA-MQ-A6BL-01 X 102334359 102334359 C A NXF3 Silent p.V421V 0.26 TCGA-MQ-A6BL-01 X 69456972 69456972 G A AWAT1 Missense_Mutation p.A112T 0.30 deleterious(0.03) possibly_damaging(0.795) TCGA-MQ-A6BQ-01 10 116038516 116038516 C T VWA2 Silent p.L247L 0.35 TCGA-MQ-A6BQ-01 10 43087844 43087844 C A ZNF33B 3'UTR 0.44 TCGA-MQ-A6BQ-01 11 58893184 58893184 G - FAM111B Frame_Shift_Del p.S539Pfs*5 0.25 TCGA-MQ-A6BQ-01 12 95694364 95694364 T G VEZT Missense_Mutation p.F752C 0.22 deleterious(0) probably_damaging(0.999) TCGA-MQ-A6BQ-01 13 111137284 111137284 C T COL4A2 Missense_Mutation p.P979S 0.30 possibly_damaging(0.876) TCGA-MQ-A6BQ-01 14 23417207 23417207 G A HAUS4 Missense_Mutation p.T193I 0.36 tolerated(0.12) benign(0.021) TCGA-MQ-A6BQ-01 16 55703581 55703581 G A SLC6A2 Missense_Mutation p.V127I 0.39 tolerated(0.47) possibly_damaging(0.812) TCGA-MQ-A6BQ-01 17 35939390 35939390 A C SYNRG Intron 0.27 TCGA-MQ-A6BQ-01 17 57270889 57270889 C T PRR11 Nonsense_Mutation p.Q147* 0.24 TCGA-MQ-A6BQ-01 19 12917416 12917424 CGCGGAAAA - RNASEH2A 5'UTR 0.35 TCGA-MQ-A6BQ-01 19 59074809 59074810 - GT MZF1 Frame_Shift_Ins p.V279Tfs*34 0.31 TCGA-MQ-A6BQ-01 1 26488672 26488672 G C FAM110D 3'UTR 0.44 TCGA-MQ-A6BQ-01 2 160869774 160869774 C T PLA2R1 Missense_Mutation p.R555K 0.25 deleterious(0.01) possibly_damaging(0.816) TCGA-MQ-A6BQ-01 2 202631964 202631964 G C ALS2 Missense_Mutation p.L55V 0.35 deleterious(0) probably_damaging(0.998) TCGA-MQ-A6BQ-01 2 208633229 208633229 A G FZD5 Missense_Mutation p.S79P 0.04 deleterious(0) probably_damaging(1) TCGA-MQ-A6BQ-01 2 228881390 228881390 T C SPHKAP Missense_Mutation p.T1394A 0.34 tolerated(0.81) benign(0.005) TCGA-MQ-A6BQ-01 3 155637128 155637128 G A GMPS Splice_Site p.X440_splice 0.30 TCGA-MQ-A6BQ-01 3 50402898 50402898 T G CACNA2D2 Missense_Mutation p.E1003A 0.25 tolerated(0.17) possibly_damaging(0.648) TCGA-MQ-A6BQ-01 3 9166475 9166475 C T SRGAP3 Missense_Mutation p.R65H 0.25 deleterious(0) probably_damaging(0.998) TCGA-MQ-A6BQ-01 4 54011510 54011510 T C SCFD2 Silent p.Q517Q 0.29 TCGA-MQ-A6BQ-01 5 112927718 112927718 T C YTHDC2 Missense_Mutation p.I1352T 0.35 tolerated(0.1) possibly_damaging(0.859) TCGA-MQ-A6BQ-01 6 41185682 41185682 G T TREML3P Intron 0.37 TCGA-MQ-A6BQ-01 6 56496067 56496067 T A DST Missense_Mutation p.N825Y 0.38 possibly_damaging(0.575) TCGA-MQ-A6BQ-01 7 148701052 148701052 G A PDIA4 Missense_Mutation p.P591L 0.31 deleterious(0.02) probably_damaging(0.938) TCGA-MQ-A6BQ-01 8 128752957 128752957 C G MYC Missense_Mutation p.T373R 0.33 deleterious(0) probably_damaging(0.999) TCGA-MQ-A6BQ-01 8 38285886 38285886 A T FGFR1 Missense_Mutation p.D175E 0.22 tolerated(0.59) benign(0.005) TCGA-MQ-A6BQ-01 9 20912938 20912938 G C FOCAD Missense_Mutation p.S931T 0.25 tolerated(0.39) benign(0) TCGA-MQ-A6BQ-01 X 47430353 47430353 G A ARAF Missense_Mutation p.R543Q 0.61 deleterious(0.01) benign(0.278) TCGA-MQ-A6BQ-01 Y 6954364 6954364 G A TBL1Y Missense_Mutation p.D396N 0.73 tolerated(0.12) probably_damaging(0.968) TCGA-MQ-A6BR-01 10 33134521 33134521 G A C10ORF68 Missense_Mutation p.E406K 0.71 tolerated(0.19) benign(0.201) TCGA-MQ-A6BR-01 10 43292950 43292950 C G BMS1 Missense_Mutation p.R690G 0.59 deleterious(0.02) benign(0.31) TCGA-MQ-A6BR-01 11 36511988 36511988 C A TRAF6 Missense_Mutation p.Q323H 0.57 tolerated(0.08) probably_damaging(0.993) TCGA-MQ-A6BR-01 11 77790860 77790860 C A NDUFC2 5'UTR 0.66 TCGA-MQ-A6BR-01 12 111885945 111885945 G A SH2B3 Missense_Mutation p.E523K 0.57 deleterious(0.03) probably_damaging(0.994) TCGA-MQ-A6BR-01 12 58191513 58191513 A - AVIL 3'Flank 0.73 TCGA-MQ-A6BR-01 15 102299978 102299978 G T DNM1P47 RNA 0.14 TCGA-MQ-A6BR-01 15 85410596 85410596 G T ALPK3 Missense_Mutation p.G1793V 0.55 deleterious(0) probably_damaging(1) TCGA-MQ-A6BR-01 17 18181161 18181161 G A TOP3A Silent p.G885G 0.56 TCGA-MQ-A6BR-01 17 7576855 7576855 G A TP53 Nonsense_Mutation p.Q331* 0.67 TCGA-MQ-A6BR-01 18 18572816 18572817 TT - ROCK1 Frame_Shift_Del p.Q656Rfs*4 0.29 TCGA-MQ-A6BR-01 19 54803629 54803629 T A LILRA3 Missense_Mutation p.K65N 0.51 tolerated(0.31) benign(0.025) TCGA-MQ-A6BR-01 19 5917645 5917645 G A RANBP3 Silent p.D560D 0.12 TCGA-MQ-A6BR-01 1 150923373 150923373 A - SETDB1 Frame_Shift_Del p.K674Sfs*73 0.34 TCGA-MQ-A6BR-01 20 45905501 45905501 T C ZMYND8 Missense_Mutation p.K346R 0.56 deleterious(0.05) benign(0.025) TCGA-MQ-A6BR-01 22 30035096 30035100 TTCAA - NF2 Frame_Shift_Del p.S87Gfs*15 0.52 TCGA-MQ-A6BR-01 2 109400061 109400061 A G RANBP2 Missense_Mutation p.I3127V 0.65 deleterious(0.03) probably_damaging(0.999) TCGA-MQ-A6BR-01 2 44508542 44508542 C T SLC3A1 Silent p.I209I 0.07 TCGA-MQ-A6BR-01 3 195512563 195512563 G T MUC4 Missense_Mutation p.T1963K 0.21 unknown(0) TCGA-MQ-A6BR-01 5 31305430 31305430 C T CDH6 Silent p.F383F 0.37 TCGA-MQ-A6BS-01 11 1908744 1908744 G T LSP1 Missense_Mutation p.G452V 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-MQ-A6BS-01 11 403767 403767 G C PKP3 Missense_Mutation p.E691D 0.26 tolerated(0.46) probably_damaging(0.996) TCGA-MQ-A6BS-01 12 57588163 57588163 C T LRP1 Missense_Mutation p.R2649C 0.23 possibly_damaging(0.614) TCGA-MQ-A6BS-01 12 6619460 6619460 G C NCAPD2 Intron 0.49 TCGA-MQ-A6BS-01 12 70989893 70989893 A G PTPRB Silent p.N398N 0.23 TCGA-MQ-A6BS-01 14 23447589 23447589 G C AJUBA Missense_Mutation p.L358V 0.37 tolerated(0.11) possibly_damaging(0.874) TCGA-MQ-A6BS-01 14 52164860 52164860 G T FRMD6 Missense_Mutation p.V34F 0.45 deleterious(0) probably_damaging(1) TCGA-MQ-A6BS-01 15 25315655 25315655 C T SNORD116-8 RNA 0.36 TCGA-MQ-A6BS-01 15 34355424 34355424 G A CHRM5 Nonsense_Mutation p.W169* 0.25 TCGA-MQ-A6BS-01 16 19553366 19553366 C G CCP110 Missense_Mutation p.T736S 0.34 tolerated(0.28) benign(0.04) TCGA-MQ-A6BS-01 16 4924841 4924841 C T UBN1 Silent p.G810G 0.28 TCGA-MQ-A6BS-01 16 67645994 67645994 C G CTCF Missense_Mutation p.L308V 0.27 deleterious(0.03) probably_damaging(0.928) TCGA-MQ-A6BS-01 17 10409173 10409173 C T MYH1 Silent p.R710R 0.39 TCGA-MQ-A6BS-01 17 21206523 21206523 G C MAP2K3 Missense_Mutation p.S182T 0.54 tolerated(0.24) benign(0.06) TCGA-MQ-A6BS-01 17 38296820 38296820 C T CASC3 Nonsense_Mutation p.Q7* 0.32 TCGA-MQ-A6BS-01 17 39019521 39019521 G T KRT12 Silent p.L390L 0.28 TCGA-MQ-A6BS-01 18 76753836 76753836 G A SALL3 Silent p.A615A 0.51 TCGA-MQ-A6BS-01 19 1271574 1271574 G A CIRBP Missense_Mutation p.G125E 0.41 tolerated(0.17) unknown(0) TCGA-MQ-A6BS-01 19 19453425 19453425 C T MAU2 Missense_Mutation p.P273S 0.37 tolerated(0.82) benign(0.037) TCGA-MQ-A6BS-01 19 44679885 44679885 A G ZNF226 Missense_Mutation p.N157S 0.45 tolerated(0.97) benign(0.001) TCGA-MQ-A6BS-01 19 50453350 50453350 C T SIGLEC11 Silent p.A658A 0.46 TCGA-MQ-A6BS-01 1 114184981 114184981 G C MAGI3 Missense_Mutation p.M603I 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-MQ-A6BS-01 1 151512820 151512820 G A TUFT1 5'UTR 0.23 TCGA-MQ-A6BS-01 1 160313206 160313206 G A NCSTN Missense_Mutation p.G7D 0.40 deleterious_low_confidence(0.02) benign(0.12) TCGA-MQ-A6BS-01 22 30822776 30822776 G A MTFP1 Missense_Mutation p.V47M 0.32 deleterious(0) probably_damaging(0.958) TCGA-MQ-A6BS-01 2 112779927 112779927 C A MERTK Silent p.L814L 0.18 TCGA-MQ-A6BS-01 2 177015045 177015045 G A HOXD3 5'Flank 0.13 TCGA-MQ-A6BS-01 2 179597632 179597632 G A TTN Missense_Mutation p.A5424V 0.39 TCGA-MQ-A6BS-01 2 64126709 64126709 C T VPS54 Missense_Mutation p.V878M 0.64 deleterious(0) probably_damaging(0.994) TCGA-MQ-A6BS-01 3 141904815 141904815 C G GK5 Missense_Mutation p.V258L 0.59 tolerated(0.08) benign(0.213) TCGA-MQ-A6BS-01 3 180328136 180328152 ACAAATCAAGGAGAATA - TTC14 Frame_Shift_Del p.T707* 0.20 TCGA-MQ-A6BS-01 3 195513343 195513343 G A MUC4 Missense_Mutation p.S1703F 0.16 possibly_damaging(0.782) TCGA-MQ-A6BS-01 3 19938314 19938314 A G EFHB Silent p.H530H 0.18 TCGA-MQ-A6BS-01 3 32032510 32032510 G A ZNF860 3'UTR 0.31 TCGA-MQ-A6BS-01 3 47129622 47129623 - T SETD2 Frame_Shift_Ins p.T1753Nfs*36 0.40 TCGA-MQ-A6BS-01 4 187521311 187521311 G C FAT1 Missense_Mutation p.N3948K 0.09 benign(0.031) TCGA-MQ-A6BS-01 4 47462204 47462204 T C COMMD8 Missense_Mutation p.K60R 0.10 tolerated(0.47) benign(0.006) TCGA-MQ-A6BS-01 5 175523884 175523884 C G FAM153B Missense_Mutation p.T64R 0.09 tolerated_low_confidence(0.87) possibly_damaging(0.814) TCGA-MQ-A6BS-01 5 40843646 40843646 G T CARD6 Missense_Mutation p.A226S 0.17 tolerated(0.46) benign(0.003) TCGA-MQ-A6BS-01 6 154360784 154360784 C T OPRM1 Silent p.S128S 0.76 TCGA-MQ-A6BS-01 6 292540 292540 A G DUSP22 Translation_Start_Site p.M1? 0.46 deleterious(0) benign(0.005) TCGA-MQ-A6BS-01 6 30709071 30709071 C T FLOT1 Missense_Mutation p.A84T 0.14 deleterious(0) probably_damaging(0.995) TCGA-MQ-A6BS-01 6 33272907 33272907 C T TAPBP Missense_Mutation p.D243N 0.24 deleterious(0.01) probably_damaging(0.953) TCGA-MQ-A6BS-01 6 33272986 33272986 C T TAPBP Silent p.L216L 0.24 TCGA-MQ-A6BS-01 6 33272993 33272993 C T TAPBP Missense_Mutation p.G214E 0.25 deleterious(0) probably_damaging(1) TCGA-MQ-A6BS-01 6 33273000 33273000 C T TAPBP Missense_Mutation p.G212S 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-MQ-A6BS-01 6 46660627 46660627 C T TDRD6 Missense_Mutation p.L1588F 0.04 tolerated(0.07) benign(0.078) TCGA-MQ-A6BS-01 7 103252111 103252111 C T RELN Missense_Mutation p.V948M 0.29 deleterious(0) possibly_damaging(0.883) TCGA-MQ-A6BS-01 8 110471929 110471929 G A PKHD1L1 Silent p.T2370T 0.44 TCGA-MQ-A6BS-01 9 139974535 139974535 G A UAP1L1 Silent p.P373P 0.06 TCGA-MQ-A6BS-01 9 94821476 94821476 C T SPTLC1 Silent p.E225E 0.28 TCGA-MQ-A6BS-01 X 108868104 108868104 C A KCNE1L Missense_Mutation p.R49L 0.82 deleterious(0.01) possibly_damaging(0.578) TCGA-MQ-A6BS-01 X 119249499 119249499 C T RHOXF1 Missense_Mutation p.A92T 0.78 tolerated(0.14) possibly_damaging(0.483) TCGA-MQ-A6BS-01 X 153172036 153172036 A T AVPR2 Missense_Mutation p.I324F 0.76 deleterious(0) possibly_damaging(0.903) TCGA-NQ-A57I-01 10 45488882 45488882 C T RASSF4 3'UTR 0.09 TCGA-NQ-A57I-01 10 69957164 69957164 C T MYPN Nonsense_Mutation p.R1072* 0.57 TCGA-NQ-A57I-01 11 118307464 118307464 C G KMT2A Silent p.A79A 0.38 TCGA-NQ-A57I-01 11 124120477 124120477 G - OR8G1 Frame_Shift_Del p.E19Nfs*14 0.23 TCGA-NQ-A57I-01 11 6530271 6530271 T G DNHD1 Missense_Mutation p.I361S 0.19 probably_damaging(0.999) TCGA-NQ-A57I-01 12 100646144 100646144 T - DEPDC4 3'UTR 0.30 TCGA-NQ-A57I-01 12 101705853 101705853 T C UTP20 Missense_Mutation p.V784A 0.05 tolerated(1) benign(0) TCGA-NQ-A57I-01 12 14940426 14940426 G A WBP11 Missense_Mutation p.P500L 0.28 tolerated_low_confidence(0.16) unknown(0) TCGA-NQ-A57I-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.70 deleterious(0.04) probably_damaging(0.993) TCGA-NQ-A57I-01 12 42858941 42858941 G T PRICKLE1 Missense_Mutation p.Q299K 0.11 tolerated(0.09) benign(0.026) TCGA-NQ-A57I-01 12 43769939 43769939 C T ADAMTS20 Missense_Mutation p.D1745N 0.06 tolerated(0.08) possibly_damaging(0.535) TCGA-NQ-A57I-01 12 46245644 46245645 GG - ARID2 Frame_Shift_Del p.E1247Gfs*13 0.36 TCGA-NQ-A57I-01 13 98086661 98086661 C A RAP2A 5'UTR 0.17 TCGA-NQ-A57I-01 14 104645070 104645070 C T KIF26A Missense_Mutation p.T1765I 0.44 tolerated(0.08) benign(0.01) TCGA-NQ-A57I-01 15 42115983 42115983 G A MAPKBP1 Missense_Mutation p.G1319S 0.28 tolerated(0.54) benign(0.011) TCGA-NQ-A57I-01 15 55710331 55710331 C A C15orf65 Intron 0.18 TCGA-NQ-A57I-01 15 57910302 57910302 A G MYZAP Silent p.R78R 0.20 TCGA-NQ-A57I-01 15 93540263 93540263 A G CHD2 Silent p.Q1224Q 0.28 TCGA-NQ-A57I-01 16 2259423 2259423 G A BRICD5 Silent p.I209I 0.05 TCGA-NQ-A57I-01 16 68597476 68597476 C G ZFP90 Silent p.T262T 0.07 TCGA-NQ-A57I-01 17 39645823 39645826 CTGC A KRT36 In_Frame_Del p.M97_Q98delinsI 0.61 TCGA-NQ-A57I-01 17 7577580 7577580 T C TP53 Missense_Mutation p.Y234C 0.55 deleterious(0) probably_damaging(0.992) TCGA-NQ-A57I-01 17 78185947 78185947 G T SGSH Missense_Mutation p.A291D 0.09 tolerated(0.14) probably_damaging(0.965) TCGA-NQ-A57I-01 18 61637385 61637385 A G SERPINB8 5'UTR 0.19 TCGA-NQ-A57I-01 19 20727762 20727762 T G ZNF737 Missense_Mutation p.K416T 0.05 deleterious(0.02) unknown(0) TCGA-NQ-A57I-01 19 3816840 3816840 G A ZFR2 Silent p.S645S 0.28 TCGA-NQ-A57I-01 19 48204622 48204622 C T GLTSCR1 Silent p.P1211P 0.24 TCGA-NQ-A57I-01 19 51920008 51920008 G A SIGLEC10 Silent p.P206P 0.24 TCGA-NQ-A57I-01 19 52195900 52195900 C T SPACA6P-AS RNA 0.18 TCGA-NQ-A57I-01 19 52195928 52195928 C T MIR99B RNA 0.19 TCGA-NQ-A57I-01 19 52196386 52196386 C G SPACA6P-AS RNA 0.17 TCGA-NQ-A57I-01 19 52196893 52196893 C G SPACA6P RNA 0.40 TCGA-NQ-A57I-01 19 52197018 52197018 C G SPACA6P RNA 0.47 TCGA-NQ-A57I-01 19 53887231 53887231 T G ZNF525 3'UTR 0.21 TCGA-NQ-A57I-01 19 55445093 55445093 C T NLRP7 Missense_Mutation p.R829H 0.20 tolerated(1) benign(0) TCGA-NQ-A57I-01 19 56896367 56896367 T A ZNF582 Missense_Mutation p.H140L 0.25 tolerated(0.23) benign(0.004) TCGA-NQ-A57I-01 19 9063524 9063524 C A MUC16 Silent p.L7974L 0.15 TCGA-NQ-A57I-01 19 9068667 9068667 G T MUC16 Missense_Mutation p.A6260E 0.29 unknown(0) TCGA-NQ-A57I-01 19 9070156 9070156 T G MUC16 Missense_Mutation p.T5764P 0.11 unknown(0) TCGA-NQ-A57I-01 1 160970855 160970855 G T F11R Missense_Mutation p.Q66K 0.16 tolerated(1) benign(0.001) TCGA-NQ-A57I-01 1 170940921 170940921 G T MROH9 Silent p.L171L 0.04 TCGA-NQ-A57I-01 1 17743084 17743084 T C RCC2 Silent p.E306E 0.14 TCGA-NQ-A57I-01 1 192153433 192153433 C A RGS18 Missense_Mutation p.L153I 0.15 tolerated(0.58) possibly_damaging(0.66) TCGA-NQ-A57I-01 1 34663474 34663474 G A C1orf94 Silent p.K323K 0.14 TCGA-NQ-A57I-01 1 48695024 48695024 G T SLC5A9 Missense_Mutation p.G158C 0.21 deleterious(0) probably_damaging(1) TCGA-NQ-A57I-01 1 87805758 87805758 G A LMO4 Missense_Mutation p.R121H 0.24 deleterious(0.04) benign(0.019) TCGA-NQ-A57I-01 20 33866935 33866935 C T EIF6 3'UTR 0.43 TCGA-NQ-A57I-01 20 47601325 47601325 C T ARFGEF2 Missense_Mutation p.T673M 0.23 deleterious(0.03) benign(0.041) TCGA-NQ-A57I-01 2 101869485 101869485 G A CNOT11 Missense_Mutation p.R20K 0.12 tolerated_low_confidence(0.3) unknown(0) TCGA-NQ-A57I-01 3 114058240 114058240 C G ZBTB20 Missense_Mutation p.R613P 0.40 deleterious(0) probably_damaging(0.992) TCGA-NQ-A57I-01 3 124376358 124376358 G A KALRN Missense_Mutation p.V67M 0.09 deleterious(0) probably_damaging(0.976) TCGA-NQ-A57I-01 4 129783315 129783315 C T JADE1 Missense_Mutation p.R480W 0.15 deleterious(0.01) possibly_damaging(0.676) TCGA-NQ-A57I-01 4 155748121 155748121 A G RBM46 Intron 0.20 TCGA-NQ-A57I-01 4 37446606 37446606 G A KIAA1239 Missense_Mutation p.R999Q 0.16 tolerated(0.33) benign(0.234) TCGA-NQ-A57I-01 6 26056144 26056144 A - HIST1H1C Frame_Shift_Del p.K172Rfs*22 0.14 TCGA-NQ-A57I-01 6 89856219 89856219 G T PM20D2 Missense_Mutation p.G119V 0.53 deleterious(0.04) benign(0.257) TCGA-NQ-A57I-01 7 143097091 143097091 G A EPHA1 Missense_Mutation p.S163F 0.39 deleterious(0.05) benign(0.155) TCGA-NQ-A57I-01 7 1519105 1519105 G A INTS1 Silent p.F1430F 0.14 TCGA-NQ-A57I-01 7 64639777 64639777 G C INTS4L1 RNA 0.09 TCGA-NQ-A57I-01 7 6661148 6661148 C A ZNF853 Missense_Mutation p.Q176K 0.30 deleterious_low_confidence(0) unknown(0) TCGA-NQ-A57I-01 7 98786163 98786163 C T KPNA7 Silent p.T220T 0.11 TCGA-NQ-A57I-01 8 139278013 139278013 C T FAM135B Missense_Mutation p.R77Q 0.14 deleterious(0) probably_damaging(0.914) TCGA-NQ-A57I-01 8 20110892 20110892 T G LZTS1 Missense_Mutation p.T184P 0.16 deleterious(0) probably_damaging(0.998) TCGA-NQ-A57I-01 9 101552793 101552793 G A ANKS6 Missense_Mutation p.S152F 0.50 deleterious(0) benign(0.403) TCGA-NQ-A57I-01 X 153210232 153210232 C T RENBP 5'Flank 0.58 TCGA-NQ-A638-01 11 71193958 71193958 C T NADSYN1 Missense_Mutation p.P405L 0.16 deleterious(0.02) benign(0.25) TCGA-NQ-A638-01 12 26274890 26274890 T A BHLHE41 3'UTR 0.55 TCGA-NQ-A638-01 12 72233533 72233533 T C TBC1D15 5'UTR 0.05 TCGA-NQ-A638-01 13 79190392 79190392 T A RNF219 Nonsense_Mutation p.K502* 0.24 TCGA-NQ-A638-01 14 39650941 39650941 A G PNN Silent p.K676K 0.29 TCGA-NQ-A638-01 14 58895118 58895118 G T KIAA0586 Missense_Mutation p.A58S 0.29 tolerated(0.07) probably_damaging(0.936) TCGA-NQ-A638-01 14 58895119 58895119 C T KIAA0586 Missense_Mutation p.A58V 0.28 tolerated(0.1) benign(0.336) TCGA-NQ-A638-01 14 74085954 74085954 T C ACOT6 Missense_Mutation p.I12T 0.29 deleterious(0.03) possibly_damaging(0.555) TCGA-NQ-A638-01 15 65113216 65113216 G C PIF1 Silent p.T386T 0.17 TCGA-NQ-A638-01 16 2225609 2225609 T C TRAF7 Missense_Mutation p.Y538H 0.12 tolerated(0.06) possibly_damaging(0.447) TCGA-NQ-A638-01 16 5106188 5106188 C T C16orf89 Missense_Mutation p.R210K 0.32 tolerated(1) benign(0) TCGA-NQ-A638-01 17 12899969 12899969 C G ELAC2 Missense_Mutation p.E518D 0.28 deleterious(0) probably_damaging(0.994) TCGA-NQ-A638-01 17 16062163 16062163 T A NCOR1 Nonsense_Mutation p.K215* 0.33 TCGA-NQ-A638-01 17 17719682 17719704 GCTTCCCTGGAAGGCAAGCAGGC TG SREBF1 Splice_Site p.X713_splice 0.42 TCGA-NQ-A638-01 17 37209186 37209186 G T CTD-2206N4.4 5'Flank 0.24 TCGA-NQ-A638-01 17 72436784 72436784 C G GPRC5C Missense_Mutation p.A335G 0.29 deleterious(0) possibly_damaging(0.46) TCGA-NQ-A638-01 17 74382063 74382063 C T SPHK1 Intron 0.47 TCGA-NQ-A638-01 18 44585947 44585947 C T KATNAL2 Silent p.R85R 0.42 TCGA-NQ-A638-01 19 2213925 2213925 G C DOT1L Silent p.R579R 0.22 TCGA-NQ-A638-01 19 35617453 35617453 G T LGI4 Silent p.G340G 0.41 TCGA-NQ-A638-01 19 51728522 51728522 T G CD33 Missense_Mutation p.V29G 0.18 deleterious(0) probably_damaging(0.996) TCGA-NQ-A638-01 19 55044985 55044985 G A KIR3DX1 Silent p.P35P 0.37 TCGA-NQ-A638-01 19 59028530 59028530 G A ZBTB45 Missense_Mutation p.R171C 0.34 deleterious(0) possibly_damaging(0.72) TCGA-NQ-A638-01 1 110737327 110737327 G A SLC6A17 Missense_Mutation p.G476R 0.19 deleterious(0.02) probably_damaging(0.984) TCGA-NQ-A638-01 1 1323369 1323369 G A CCNL2 Silent p.G361G 0.33 TCGA-NQ-A638-01 1 152082800 152082800 T G TCHH Missense_Mutation p.K965Q 0.17 unknown(0) TCGA-NQ-A638-01 1 240656767 240656767 C T GREM2 Nonsense_Mutation p.W3* 0.25 TCGA-NQ-A638-01 1 248616729 248616729 C A OR2T2 Missense_Mutation p.P211T 0.23 deleterious(0) probably_damaging(0.96) TCGA-NQ-A638-01 1 248616730 248616730 C A OR2T2 Missense_Mutation p.P211H 0.25 deleterious(0) probably_damaging(0.995) TCGA-NQ-A638-01 1 43111951 43111951 C T CCDC30 Missense_Mutation p.P679L 0.54 tolerated_low_confidence(0.05) benign(0.009) TCGA-NQ-A638-01 1 74819682 74819684 ACC - FPGT-TNNI3K In_Frame_Del p.H464del 0.41 TCGA-NQ-A638-01 20 57016127 57016128 - A VAPB Frame_Shift_Ins p.Q189Afs*33 0.18 TCGA-NQ-A638-01 20 61299482 61299482 T C SLCO4A1 Missense_Mutation p.V586A 0.49 tolerated(0.19) benign(0.007) TCGA-NQ-A638-01 21 43809127 43809127 C T TMPRSS3 Missense_Mutation p.R78K 0.12 tolerated(0.16) benign(0.053) TCGA-NQ-A638-01 22 30136643 30136643 C T ZMAT5 Silent p.V89V 0.61 TCGA-NQ-A638-01 22 50705577 50705577 C A MAPK11 Silent p.V158V 0.28 TCGA-NQ-A638-01 2 133539782 133539782 C T NCKAP5 Silent p.K1534K 0.05 TCGA-NQ-A638-01 2 15735266 15735266 C T DDX1 Intron 0.15 TCGA-NQ-A638-01 2 160053260 160053260 C T TANC1 Silent p.L1041L 0.22 TCGA-NQ-A638-01 2 176866925 176866925 C G KIAA1715 5'UTR 0.47 TCGA-NQ-A638-01 2 17963226 17963245 TAACTTAACTATTTTAGTAC - GEN1 3'UTR 0.36 TCGA-NQ-A638-01 2 239306306 239306306 G A TRAF3IP1 Silent p.L632L 0.54 TCGA-NQ-A638-01 2 31409327 31409327 G T CAPN14 Missense_Mutation p.L538I 0.44 deleterious(0.04) probably_damaging(0.989) TCGA-NQ-A638-01 2 67631885 67631888 CAAT - ETAA1 Frame_Shift_Del p.K693Ifs*2 0.11 TCGA-NQ-A638-01 3 196234736 196234736 C T SMCO1 3'UTR 0.21 TCGA-NQ-A638-01 3 41267295 41267295 C T CTNNB1 Silent p.F293F 0.31 TCGA-NQ-A638-01 3 52012032 52012032 C T ABHD14A Missense_Mutation p.A72V 0.23 tolerated(0.16) benign(0.002) TCGA-NQ-A638-01 4 727513 727513 T A PCGF3 Missense_Mutation p.I15N 0.38 deleterious(0) probably_damaging(0.994) TCGA-NQ-A638-01 5 154282724 154282724 C A GEMIN5 Missense_Mutation p.D882Y 0.17 deleterious(0) possibly_damaging(0.886) TCGA-NQ-A638-01 5 159992523 159992523 A T ATP10B Silent p.T1441T 0.48 TCGA-NQ-A638-01 5 16711041 16711041 G A MYO10 Silent p.S715S 0.38 TCGA-NQ-A638-01 5 176812754 176812754 C T SLC34A1 Silent p.Y4Y 0.26 TCGA-NQ-A638-01 5 41069850 41069850 C T MROH2B Missense_Mutation p.M11I 0.40 tolerated_low_confidence(1) benign(0) TCGA-NQ-A638-01 5 64020297 64020297 C G SREK1IP1 Missense_Mutation p.G128R 0.14 deleterious_low_confidence(0.01) unknown(0) TCGA-NQ-A638-01 5 92956530 92956530 C A FAM172A 3'UTR 0.51 TCGA-NQ-A638-01 6 117591886 117591886 C T VGLL2 Missense_Mutation p.T191M 0.47 deleterious(0) benign(0.112) TCGA-NQ-A638-01 7 121943242 121943242 T A FEZF1 Missense_Mutation p.I309F 0.17 deleterious(0) probably_damaging(0.996) TCGA-NQ-A638-01 7 136912772 136912772 C A PTN Missense_Mutation p.D168Y 0.22 deleterious_low_confidence(0) unknown(0) TCGA-NQ-A638-01 7 143956162 143956162 G T OR2A7 Missense_Mutation p.A187D 0.14 deleterious(0) probably_damaging(0.993) TCGA-NQ-A638-01 7 44187289 44187289 G A GCK Missense_Mutation p.R276C 0.38 deleterious(0.01) probably_damaging(0.956) TCGA-NQ-A638-01 8 103820100 103820100 G A KB-1732A1.1 RNA 0.61 TCGA-NQ-A638-01 8 144891088 144891088 G C SCRIB Silent p.L602L 0.18 TCGA-NQ-A638-01 8 25890617 25890617 G T EBF2 Missense_Mutation p.P179T 0.18 deleterious(0) probably_damaging(0.994) TCGA-NQ-A638-01 9 84562825 84562825 C A RP11-383M4.6 Intron 0.33 TCGA-NQ-A638-01 X 16859675 16859675 A C TXLNG Missense_Mutation p.Q458P 0.49 deleterious(0.01) benign(0.052) TCGA-NQ-A638-01 X 84362735 84362735 G T SATL1 Missense_Mutation p.P414T 0.59 tolerated(0.73) benign(0.075) TCGA-SC-A6LM-01 10 70451272 70451272 C T TET1 Missense_Mutation p.R2038C 0.34 deleterious(0) probably_damaging(1) TCGA-SC-A6LM-01 11 117152674 117152674 T C RNF214 Missense_Mutation p.I467T 0.30 tolerated(0.1) possibly_damaging(0.555) TCGA-SC-A6LM-01 11 47711871 47711871 G T AGBL2 Missense_Mutation p.P463H 0.37 deleterious(0) probably_damaging(1) TCGA-SC-A6LM-01 11 9450670 9450670 T G IPO7 Missense_Mutation p.I506M 0.35 tolerated(0.13) possibly_damaging(0.635) TCGA-SC-A6LM-01 12 129180457 129180457 C T TMEM132C Missense_Mutation p.R580W 0.33 deleterious(0) possibly_damaging(0.837) TCGA-SC-A6LM-01 12 39734062 39734062 G A KIF21A Nonsense_Mutation p.Q739* 0.32 TCGA-SC-A6LM-01 12 39734063 39734063 A G KIF21A Silent p.A738A 0.36 TCGA-SC-A6LM-01 12 64238602 64238602 C T SRGAP1 Silent p.S2S 0.32 TCGA-SC-A6LM-01 12 6451132 6451132 G A TNFRSF1A 5'UTR 0.46 TCGA-SC-A6LM-01 12 8276392 8276392 C G CLEC4A 5'UTR 0.33 TCGA-SC-A6LM-01 13 102106275 102106275 C T ITGBL1 Missense_Mutation p.S47L 0.33 deleterious(0.01) benign(0.386) TCGA-SC-A6LM-01 13 38320295 38320295 C G TRPC4 Missense_Mutation p.E226Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-SC-A6LM-01 13 78472332 78472332 C A EDNRB 3'UTR 0.36 TCGA-SC-A6LM-01 14 71051648 71051648 T A MED6 Missense_Mutation p.K208M 0.39 deleterious(0.03) possibly_damaging(0.674) TCGA-SC-A6LM-01 15 33988554 33988554 C T RYR3 Missense_Mutation p.A1999V 0.31 possibly_damaging(0.612) TCGA-SC-A6LM-01 15 51039813 51039813 T A SPPL2A Missense_Mutation p.N155Y 0.37 deleterious(0.05) possibly_damaging(0.806) TCGA-SC-A6LM-01 15 52643456 52643456 G T MYO5A Missense_Mutation p.P1282T 0.22 tolerated(0.63) benign(0.003) TCGA-SC-A6LM-01 15 59564516 59564516 C A MYO1E Missense_Mutation p.D46Y 0.37 deleterious(0) probably_damaging(0.997) TCGA-SC-A6LM-01 17 18226068 18226068 A G SMCR8 Missense_Mutation p.H833R 0.26 tolerated(0.38) possibly_damaging(0.854) TCGA-SC-A6LM-01 19 50193094 50193094 G T ADM5 5'UTR 0.49 TCGA-SC-A6LM-01 19 50247572 50247572 C T TSKS Missense_Mutation p.R426Q 0.38 deleterious(0.05) probably_damaging(0.982) TCGA-SC-A6LM-01 19 54613496 54613496 C T TFPT Silent p.E97E 0.35 TCGA-SC-A6LM-01 1 143767487 143767487 C G PPIAL4G Missense_Mutation p.W121S 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.616) TCGA-SC-A6LM-01 1 152280245 152280245 C A FLG Nonsense_Mutation p.G2373* 0.27 TCGA-SC-A6LM-01 1 38155391 38155391 G A C1orf109 Silent p.N54N 0.39 TCGA-SC-A6LM-01 1 48764360 48764360 C T SPATA6 3'UTR 0.37 TCGA-SC-A6LM-01 20 44665392 44665392 G A SLC12A5 Missense_Mutation p.A170T 0.34 deleterious(0.05) possibly_damaging(0.58) TCGA-SC-A6LM-01 2 27861795 27861795 A T GPN1 Missense_Mutation p.D219V 0.29 deleterious(0) probably_damaging(0.993) TCGA-SC-A6LM-01 3 10953855 10953855 C T SLC6A11 Silent p.N324N 0.52 TCGA-SC-A6LM-01 3 111637983 111637983 T C PHLDB2 Missense_Mutation p.I595T 0.39 tolerated(0.05) benign(0.017) TCGA-SC-A6LM-01 3 122632056 122632056 G A SEMA5B Silent p.C886C 0.43 TCGA-SC-A6LM-01 3 15457036 15457036 C T METTL6 Intron 0.33 TCGA-SC-A6LM-01 3 186980392 186980392 G C MASP1 Missense_Mutation p.F118L 0.29 deleterious(0.02) possibly_damaging(0.667) TCGA-SC-A6LM-01 4 40339280 40339280 C T CHRNA9 Silent p.H88H 0.36 TCGA-SC-A6LM-01 4 66467877 66467877 T A EPHA5 Missense_Mutation p.K131I 0.39 deleterious(0) probably_damaging(0.998) TCGA-SC-A6LM-01 5 123984372 123984372 C T ZNF608 Missense_Mutation p.G569S 0.28 deleterious(0) probably_damaging(1) TCGA-SC-A6LM-01 5 140574379 140574379 C T PCDHB10 Nonsense_Mutation p.Q752* 0.32 TCGA-SC-A6LM-01 5 149206254 149206254 G A PPARGC1B Missense_Mutation p.A91T 0.22 deleterious(0) probably_damaging(0.998) TCGA-SC-A6LM-01 5 41067317 41067317 C T MROH2B Missense_Mutation p.D32N 0.21 tolerated(0.06) benign(0.268) TCGA-SC-A6LM-01 6 150157397 150157397 G A LRP11 Missense_Mutation p.A359V 0.27 tolerated(0.32) benign(0.007) TCGA-SC-A6LM-01 6 51947278 51947278 C T PKHD1 Missense_Mutation p.V65M 0.35 deleterious(0.04) benign(0.018) TCGA-SC-A6LM-01 7 148903901 148903901 C T ZNF282 Silent p.T233T 0.30 TCGA-SC-A6LM-01 7 45018653 45018653 G A MYO1G 5'UTR 0.22 TCGA-SC-A6LN-01 10 112541153 112541153 C G RBM20 Silent p.T262T 0.09 TCGA-SC-A6LN-01 10 126715432 126715432 C T CTBP2 Silent p.A299A 0.25 TCGA-SC-A6LN-01 10 58118005 58118005 A G ZWINT Intron 0.48 TCGA-SC-A6LN-01 10 78711900 78711900 C T KCNMA1 Silent p.P776P 0.20 TCGA-SC-A6LN-01 11 122830072 122830072 C A C11orf63 Silent p.I752I 0.24 TCGA-SC-A6LN-01 11 63398566 63398566 T C ATL3 Silent p.Q495Q 0.28 TCGA-SC-A6LN-01 11 66298443 66298443 C G BBS1 Missense_Mutation p.L518V 0.23 tolerated(0.34) benign(0.102) TCGA-SC-A6LN-01 12 105150982 105150982 G A CHST11 Missense_Mutation p.E154K 0.28 deleterious(0.04) possibly_damaging(0.487) TCGA-SC-A6LN-01 12 49951274 49951274 C A KCNH3 Missense_Mutation p.S930R 0.26 tolerated_low_confidence(0.47) benign(0.001) TCGA-SC-A6LN-01 12 5941736 5941736 T A ANO2 Nonsense_Mutation p.K219* 0.33 TCGA-SC-A6LN-01 15 23003069 23003069 A G CYFIP1 3'UTR 0.21 TCGA-SC-A6LN-01 16 2225379 2225379 A G TRAF7 Silent p.S488S 0.33 TCGA-SC-A6LN-01 16 67318815 67318815 G A PLEKHG4 Missense_Mutation p.R631Q 0.34 tolerated(0.57) benign(0.004) TCGA-SC-A6LN-01 16 87723531 87723531 G A JPH3 Missense_Mutation p.R522Q 0.20 tolerated(0.08) benign(0.195) TCGA-SC-A6LN-01 16 88495988 88495988 G A ZNF469 Missense_Mutation p.G704S 0.20 benign(0.005) TCGA-SC-A6LN-01 16 88495989 88495989 G C ZNF469 Missense_Mutation p.G704A 0.20 benign(0.006) TCGA-SC-A6LN-01 16 89347601 89347601 G C ANKRD11 Silent p.L1783L 0.28 TCGA-SC-A6LN-01 17 37074996 37074996 G A LASP1 Missense_Mutation p.G251R 0.38 deleterious(0) probably_damaging(1) TCGA-SC-A6LN-01 19 47980157 47980157 A T KPTN Missense_Mutation p.L301Q 0.12 deleterious(0) probably_damaging(1) TCGA-SC-A6LN-01 1 142621017 142621017 C T RP11-417J8.6 RNA 0.10 TCGA-SC-A6LN-01 1 149858231 149858231 G A HIST2H2BE 5'UTR 0.11 TCGA-SC-A6LN-01 1 149949366 149949368 AGG - OTUD7B In_Frame_Del p.L27del 0.20 TCGA-SC-A6LN-01 1 1572539 1572544 CTGGAT - CDK11B In_Frame_Del p.I534_Q535del 0.35 TCGA-SC-A6LN-01 1 204380493 204380493 G A PPP1R15B Missense_Mutation p.A16V 0.24 tolerated_low_confidence(0.1) possibly_damaging(0.448) TCGA-SC-A6LN-01 1 22205105 22205105 G A HSPG2 Silent p.A841A 0.35 TCGA-SC-A6LN-01 1 985055 985055 G C AGRN Missense_Mutation p.G1542R 0.35 deleterious(0) probably_damaging(0.969) TCGA-SC-A6LN-01 20 32354799 32354799 C T ZNF341 Silent p.S448S 0.35 TCGA-SC-A6LN-01 20 40122285 40122285 A - CHD6 Frame_Shift_Del p.C403Afs*12 0.19 TCGA-SC-A6LN-01 21 45139173 45139173 G A PDXK 5'UTR 0.47 TCGA-SC-A6LN-01 22 45218320 45218320 C T ARHGAP8 Silent p.D274D 0.49 TCGA-SC-A6LN-01 2 152420384 152420384 A G NEB Missense_Mutation p.Y6178H 0.24 probably_damaging(1) TCGA-SC-A6LN-01 2 190324118 190324118 A G WDR75 Missense_Mutation p.D249G 0.26 tolerated(0.16) benign(0.05) TCGA-SC-A6LN-01 3 150282163 150282163 A G EIF2A Missense_Mutation p.N157S 0.47 deleterious(0.02) benign(0.05) TCGA-SC-A6LN-01 3 38548446 38548449 TAGT - EXOG Frame_Shift_Del p.S213Tfs*3 0.24 TCGA-SC-A6LN-01 3 38565600 38565600 A T EXOG Missense_Mutation p.D285V 0.29 deleterious(0.01) benign(0.215) TCGA-SC-A6LN-01 5 149585148 149585148 C T SLC6A7 Silent p.L555L 0.36 TCGA-SC-A6LN-01 5 79961072 79961072 C T MSH3 Nonsense_Mutation p.Q157* 0.33 TCGA-SC-A6LN-01 6 109770966 109770967 AG - MICAL1 Frame_Shift_Del p.L443Vfs*41 0.28 TCGA-SC-A6LN-01 6 43403589 43403589 G A ABCC10 Missense_Mutation p.R570Q 0.23 deleterious(0) probably_damaging(0.961) TCGA-SC-A6LN-01 7 40132430 40132430 T C CDK13 Silent p.I1094I 0.22 TCGA-SC-A6LN-01 9 109690918 109690918 C T ZNF462 Silent p.G1575G 0.31 TCGA-SC-A6LN-01 9 125617515 125617515 A T RC3H2 Silent p.P921P 0.06 TCGA-SC-A6LN-01 9 139257526 139257526 C T DNLZ Missense_Mutation p.V95M 0.36 deleterious(0) probably_damaging(0.998) TCGA-SC-A6LN-01 X 123179198 123179198 G T STAG2 Missense_Mutation p.R216L 0.60 deleterious(0.01) probably_damaging(0.987) TCGA-SC-A6LN-01 X 84189278 84189278 G A UBE2DNL RNA 0.36 TCGA-SC-A6LP-01 11 194549 194549 C T SCGB1C1 3'UTR 0.17 TCGA-SC-A6LP-01 11 8939084 8939084 T G AKIP1 Intron 0.52 TCGA-SC-A6LP-01 12 112622296 112622296 C T HECTD4 Missense_Mutation p.A3346T 0.42 benign(0.004) TCGA-SC-A6LP-01 12 862687 862687 C T WNK1 5'UTR 0.62 TCGA-SC-A6LP-01 13 93518741 93518741 C T GPC5 3'UTR 0.50 TCGA-SC-A6LP-01 14 64066236 64066236 A C WDR89 Missense_Mutation p.L142W 0.06 deleterious(0) possibly_damaging(0.571) TCGA-SC-A6LP-01 15 73076017 73076017 C A ADPGK Missense_Mutation p.G6C 0.76 deleterious_low_confidence(0.03) probably_damaging(0.97) TCGA-SC-A6LP-01 17 59489220 59489220 C T C17orf82 5'UTR 0.82 TCGA-SC-A6LP-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.73 tolerated(0.13) possibly_damaging(0.631) TCGA-SC-A6LP-01 19 42880398 42880398 G A MEGF8 Nonsense_Mutation p.W2603* 0.65 TCGA-SC-A6LP-01 19 55451321 55451321 C T NLRP7 Missense_Mutation p.R289K 0.63 tolerated(0.11) possibly_damaging(0.823) TCGA-SC-A6LP-01 1 150935077 150935078 - T SETDB1 Frame_Shift_Ins p.R1059Sfs*13 0.37 TCGA-SC-A6LP-01 1 173556859 173556859 G A SLC9C2 Silent p.S156S 0.52 TCGA-SC-A6LP-01 1 193018982 193018982 C A UCHL5 Splice_Site p.X47_splice 0.45 TCGA-SC-A6LP-01 1 79095454 79095454 G A IFI44L Missense_Mutation p.D193N 0.55 tolerated(0.34) benign(0.298) TCGA-SC-A6LP-01 21 45649510 45649510 A G ICOSLG Intron 0.24 TCGA-SC-A6LP-01 21 45987771 45987771 G A TSPEAR Silent p.R67R 0.55 TCGA-SC-A6LP-01 22 22285585 22285585 G A PPM1F Nonsense_Mutation p.Q276* 0.56 TCGA-SC-A6LP-01 22 30069477 30069477 T G NF2 Splice_Site p.X447_splice 0.71 TCGA-SC-A6LP-01 3 9944576 9944576 C T IL17RE Intron 0.61 TCGA-SC-A6LP-01 4 143235896 143235896 G A INPP4B Missense_Mutation p.P131L 0.36 tolerated(0.25) benign(0.002) TCGA-SC-A6LP-01 4 159174611 159174611 C T TMEM144 Silent p.L324L 0.59 TCGA-SC-A6LP-01 5 112312567 112312567 G A DCP2 5'UTR 0.22 TCGA-SC-A6LP-01 5 148617090 148617090 G T ABLIM3 Missense_Mutation p.R323L 0.37 deleterious(0) possibly_damaging(0.511) TCGA-SC-A6LP-01 5 54830516 54830516 G C PPAP2A 5'UTR 0.35 TCGA-SC-A6LP-01 5 80659648 80659648 C T ACOT12 Missense_Mutation p.A107T 0.54 deleterious(0) probably_damaging(1) TCGA-SC-A6LP-01 6 160577045 160577045 C T SLC22A1 Missense_Mutation p.L513F 0.05 deleterious(0) probably_damaging(0.993) TCGA-SC-A6LP-01 7 103123419 103123419 C T RELN Splice_Site p.X3394_splice 0.12 TCGA-SC-A6LP-01 9 26962046 26962046 G T IFT74 Silent p.G27G 0.46 TCGA-SC-A6LQ-01 10 115389480 115389480 T A NRAP Missense_Mutation p.N636I 0.26 deleterious(0) possibly_damaging(0.61) TCGA-SC-A6LQ-01 11 104839275 104839275 T C CASP4 5'UTR 0.12 TCGA-SC-A6LQ-01 11 44948233 44948233 C T TSPAN18 Silent p.Y208Y 0.16 TCGA-SC-A6LQ-01 11 73882404 73882404 C T PPME1 5'UTR 0.27 TCGA-SC-A6LQ-01 11 76731328 76731328 G A ACER3 Missense_Mutation p.G254E 0.20 deleterious_low_confidence(0.02) probably_damaging(0.961) TCGA-SC-A6LQ-01 12 11461631 11461631 G A PRB4 Missense_Mutation p.P96S 0.10 tolerated_low_confidence(0.06) unknown(0) TCGA-SC-A6LQ-01 12 46591554 46591554 A C SLC38A1 Silent p.L437L 0.29 TCGA-SC-A6LQ-01 12 58121304 58121304 G A AGAP2-AS1 Missense_Mutation p.V177M 0.18 possibly_damaging(0.781) TCGA-SC-A6LQ-01 14 24610175 24610175 C T EMC9 Splice_Site p.X67_splice 0.17 TCGA-SC-A6LQ-01 15 41021818 41021818 C T RAD51 Nonsense_Mutation p.R255* 0.22 TCGA-SC-A6LQ-01 15 55880081 55880081 T C PYGO1 Intron 0.16 TCGA-SC-A6LQ-01 16 31008016 31008018 GAT - STX1B In_Frame_Del p.I175del 0.13 TCGA-SC-A6LQ-01 16 31235633 31235633 G T TRIM72 Missense_Mutation p.A331S 0.11 tolerated(0.85) benign(0.069) TCGA-SC-A6LQ-01 16 424011 424011 C T TMEM8A Silent p.L632L 0.11 TCGA-SC-A6LQ-01 16 67236424 67236424 G A ELMO3 Silent p.E515E 0.19 TCGA-SC-A6LQ-01 16 89749084 89749084 T G RP11-368I7.4 3'UTR 0.22 TCGA-SC-A6LQ-01 17 70644994 70644994 C T SLC39A11 Missense_Mutation p.G300S 0.19 deleterious(0) probably_damaging(1) TCGA-SC-A6LQ-01 19 12126236 12126236 A G ZNF433 Silent p.G482G 0.15 TCGA-SC-A6LQ-01 19 14083611 14083611 T C RFX1 Missense_Mutation p.M420V 0.17 tolerated(0.15) benign(0.001) TCGA-SC-A6LQ-01 1 1479358 1479358 G A SSU72 Missense_Mutation p.S125F 0.12 deleterious(0.01) benign(0.03) TCGA-SC-A6LQ-01 1 158609788 158609788 C G SPTA1 Missense_Mutation p.E1583Q 0.22 tolerated(0.46) benign(0.027) TCGA-SC-A6LQ-01 1 27023257 27023282 CGGCGGCGGCGGTGGCGGCAGCAGCG - ARID1A Frame_Shift_Del p.G122Wfs*269 0.21 TCGA-SC-A6LQ-01 1 78041901 78041901 G A ZZZ3 Missense_Mutation p.S728L 0.23 tolerated(0.08) possibly_damaging(0.907) TCGA-SC-A6LQ-01 1 7887580 7887580 C T PER3 Missense_Mutation p.P856L 0.15 deleterious(0.04) benign(0.012) TCGA-SC-A6LQ-01 1 977023 977023 C T AGRN Missense_Mutation p.S373L 0.21 tolerated(0.11) possibly_damaging(0.651) TCGA-SC-A6LQ-01 20 24944511 24944511 G C APMAP Missense_Mutation p.H397D 0.16 tolerated(0.19) benign(0.006) TCGA-SC-A6LQ-01 2 10188523 10188523 C G KLF11 Silent p.P353P 0.14 TCGA-SC-A6LQ-01 2 165551324 165551324 C T COBLL1 Missense_Mutation p.A898T 0.23 deleterious(0) benign(0.005) TCGA-SC-A6LQ-01 2 54197885 54197885 G A PSME4 Missense_Mutation p.P13S 0.12 deleterious_low_confidence(0) unknown(0) TCGA-SC-A6LQ-01 3 111394036 111394036 G A PLCXD2 5'UTR 0.23 TCGA-SC-A6LQ-01 3 119327676 119327676 C T PLA1A Missense_Mutation p.T112M 0.16 tolerated(0.1) benign(0.014) TCGA-SC-A6LQ-01 3 157154696 157154699 TGGA - PTX3 5'UTR 0.22 TCGA-SC-A6LQ-01 3 182841858 182841858 C T LAMP3 3'UTR 0.16 TCGA-SC-A6LQ-01 3 20216191 20216191 C G SGOL1 Missense_Mutation p.E278Q 0.16 tolerated(0.13) benign(0.104) TCGA-SC-A6LQ-01 3 52621479 52621496 ATGTTTCATTTGGTCGGT - PBRM1 Intron 0.32 TCGA-SC-A6LQ-01 4 47322175 47322175 C A GABRB1 Missense_Mutation p.L165I 0.18 deleterious(0) probably_damaging(0.948) TCGA-SC-A6LQ-01 4 48422163 48422163 G A SLAIN2 Missense_Mutation p.R461H 0.16 deleterious(0) probably_damaging(0.996) TCGA-SC-A6LQ-01 4 75971438 75971438 C A PARM1 Missense_Mutation p.P305H 0.12 deleterious(0) probably_damaging(1) TCGA-SC-A6LQ-01 5 140215736 140215736 G C PCDHA7 Missense_Mutation p.V590L 0.19 tolerated_low_confidence(0.09) benign(0.219) TCGA-SC-A6LQ-01 5 149449493 149449493 A G CSF1R Missense_Mutation p.C485R 0.19 deleterious(0) probably_damaging(1) TCGA-SC-A6LQ-01 6 30672108 30672108 C A MDC1 Nonsense_Mutation p.E1618* 0.20 TCGA-SC-A6LQ-01 9 100049993 100049993 T G CCDC180 5'UTR 0.09 TCGA-SC-A6LQ-01 X 153171405 153171405 C T AVPR2 Missense_Mutation p.R149C 0.18 deleterious(0) probably_damaging(1) TCGA-SC-A6LR-01 10 63422778 63422778 G T C10orf107 5'UTR 0.19 TCGA-SC-A6LR-01 11 102487640 102487640 T C MMP20 Missense_Mutation p.N93D 0.17 tolerated(0.38) benign(0.003) TCGA-SC-A6LR-01 11 110477421 110477421 G A ARHGAP20 Silent p.L276L 0.18 TCGA-SC-A6LR-01 11 2439397 2439397 C T TRPM5 Silent p.L302L 0.24 TCGA-SC-A6LR-01 11 35287085 35287085 C T SLC1A2 Missense_Mutation p.D548N 0.17 tolerated_low_confidence(0.07) possibly_damaging(0.876) TCGA-SC-A6LR-01 11 70009452 70009452 C T ANO1 Intron 0.17 TCGA-SC-A6LR-01 11 8662610 8662610 G A TRIM66 Missense_Mutation p.H291Y 0.16 tolerated(0.11) benign(0.444) TCGA-SC-A6LR-01 12 18849177 18849177 T C PLCZ1 Missense_Mutation p.R400G 0.18 tolerated(0.12) benign(0.158) TCGA-SC-A6LR-01 12 4848438 4848438 C T GALNT8 Missense_Mutation p.R207W 0.09 deleterious(0.04) probably_damaging(0.997) TCGA-SC-A6LR-01 13 32786464 32786464 C T FRY Nonsense_Mutation p.Q1543* 0.26 TCGA-SC-A6LR-01 13 86368520 86368520 C G SLITRK6 Missense_Mutation p.E708D 0.24 tolerated(0.28) benign(0.004) TCGA-SC-A6LR-01 14 21870258 21870258 A - CHD8 Frame_Shift_Del p.L1307* 0.21 TCGA-SC-A6LR-01 14 73731400 73731400 G A PAPLN Missense_Mutation p.A1004T 0.31 tolerated(0.24) benign(0.012) TCGA-SC-A6LR-01 14 91779642 91779642 C T CCDC88C Missense_Mutation p.E840K 0.26 deleterious(0) probably_damaging(0.952) TCGA-SC-A6LR-01 15 25328812 25328812 G A SNORD116-17 RNA 0.19 TCGA-SC-A6LR-01 15 51242045 51242045 T - AP4E1 Frame_Shift_Del p.F447Lfs*5 0.19 TCGA-SC-A6LR-01 16 1837761 1837761 G A NUBP2 Missense_Mutation p.E140K 0.20 deleterious(0) probably_damaging(0.997) TCGA-SC-A6LR-01 16 27457365 27457365 C T IL21R Missense_Mutation p.R275W 0.18 tolerated(0.25) benign(0.004) TCGA-SC-A6LR-01 16 69951613 69951613 T G WWP2 Missense_Mutation p.W336G 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-SC-A6LR-01 16 69959368 69959368 C T WWP2 Silent p.G405G 0.26 TCGA-SC-A6LR-01 17 18881677 18881677 G A FAM83G Silent p.P434P 0.29 TCGA-SC-A6LR-01 17 38548509 38548509 G A TOP2A Missense_Mutation p.P1350L 0.08 tolerated(0.14) benign(0.001) TCGA-SC-A6LR-01 17 47041702 47041702 C G GIP Missense_Mutation p.W76S 0.15 deleterious(0) probably_damaging(1) TCGA-SC-A6LR-01 17 62915559 62915559 C T LRRC37A3 5'Flank 0.27 TCGA-SC-A6LR-01 17 7251512 7251512 G A ACAP1 Missense_Mutation p.V494M 0.21 tolerated(0.11) probably_damaging(0.98) TCGA-SC-A6LR-01 18 22807233 22807233 A T ZNF521 Missense_Mutation p.L217I 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-SC-A6LR-01 18 2920775 2920775 C T LPIN2 Splice_Site p.X849_splice 0.17 TCGA-SC-A6LR-01 19 54972992 54972992 C T LENG8 3'UTR 0.36 TCGA-SC-A6LR-01 19 55953712 55953712 G A SHISA7 Silent p.A173A 0.27 TCGA-SC-A6LR-01 1 114453878 114453878 G A DCLRE1B Missense_Mutation p.V222M 0.36 tolerated(0.05) possibly_damaging(0.615) TCGA-SC-A6LR-01 1 145560147 145560147 C G ANKRD35 Missense_Mutation p.D211E 0.47 deleterious(0) probably_damaging(0.954) TCGA-SC-A6LR-01 1 160143471 160143471 C T ATP1A4 Missense_Mutation p.A652V 0.18 tolerated(0.07) benign(0.172) TCGA-SC-A6LR-01 1 232094577 232094577 C T DISC1 Missense_Mutation p.T662I 0.15 tolerated(0.06) benign(0.076) TCGA-SC-A6LR-01 1 53153522 53153522 T C COA7 Missense_Mutation p.N189S 0.29 deleterious(0) probably_damaging(1) TCGA-SC-A6LR-01 1 9790741 9790741 C T CLSTN1 Missense_Mutation p.S924N 0.30 tolerated(0.16) benign(0.008) TCGA-SC-A6LR-01 22 21357440 21357440 C T AC002472.1 3'Flank 0.24 TCGA-SC-A6LR-01 22 41554467 41554467 A G EP300 Missense_Mutation p.I1185V 0.22 probably_damaging(0.953) TCGA-SC-A6LR-01 2 166894546 166894546 C T SCN1A Missense_Mutation p.V896I 0.22 tolerated(0.22) possibly_damaging(0.908) TCGA-SC-A6LR-01 2 202082364 202082364 G T CASP10 Missense_Mutation p.R490I 0.31 deleterious(0) benign(0.254) TCGA-SC-A6LR-01 2 240900599 240900599 G A NDUFA10 Missense_Mutation p.P335L 0.31 deleterious(0.03) benign(0.075) TCGA-SC-A6LR-01 2 242174973 242174973 A C HDLBP Missense_Mutation p.F981V 0.37 deleterious(0.02) benign(0.248) TCGA-SC-A6LR-01 2 32689786 32689786 C T BIRC6 Silent p.S1717S 0.29 TCGA-SC-A6LR-01 2 74441288 74441290 CAT - MTHFD2 In_Frame_Del p.I326del 0.18 TCGA-SC-A6LR-01 3 178952147 178952147 A T PIK3CA Missense_Mutation p.N1068Y 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.459) TCGA-SC-A6LR-01 3 42265082 42265082 C T TRAK1 Silent p.I905I 0.17 TCGA-SC-A6LR-01 3 64009586 64009586 G C PSMD6 5'Flank 0.14 TCGA-SC-A6LR-01 4 126237998 126237998 C T FAT4 Silent p.F144F 0.28 TCGA-SC-A6LR-01 4 146682115 146682115 C T ZNF827 3'UTR 0.30 TCGA-SC-A6LR-01 5 60628184 60628184 G A ZSWIM6 Missense_Mutation p.G29S 0.21 tolerated_low_confidence(0.07) unknown(0) TCGA-SC-A6LR-01 5 644519 644519 A C CEP72 Missense_Mutation p.T549P 0.47 deleterious(0.03) possibly_damaging(0.794) TCGA-SC-A6LR-01 5 74806967 74806967 C T COL4A3BP Silent p.P150P 0.43 TCGA-SC-A6LR-01 6 25966996 25966996 A C TRIM38 Missense_Mutation p.E82D 0.55 tolerated(0.42) benign(0.076) TCGA-SC-A6LR-01 6 26189021 26189021 C T HIST1H4D Missense_Mutation p.G95E 0.19 deleterious(0.02) possibly_damaging(0.696) TCGA-SC-A6LR-01 6 46661833 46661833 G A TDRD6 Missense_Mutation p.A1990T 0.29 tolerated(0.23) benign(0.002) TCGA-SC-A6LR-01 7 101847739 101847739 G A CUX1 Silent p.T1003T 0.20 TCGA-SC-A6LR-01 7 132412593 132412593 G A AC009365.3 Missense_Mutation p.G149S 0.17 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-SC-A6LR-01 7 140111746 140111746 G A RAB19 Missense_Mutation p.A92T 0.21 deleterious(0) probably_damaging(0.955) TCGA-SC-A6LR-01 7 150649644 150649644 C T KCNH2 Missense_Mutation p.V476I 0.23 deleterious(0.02) possibly_damaging(0.832) TCGA-SC-A6LR-01 7 98645475 98645475 C T SMURF1 Silent p.Q354Q 0.40 TCGA-SC-A6LR-01 8 42302195 42302195 G A SLC20A2 Silent p.F233F 0.19 TCGA-SC-A6LR-01 X 12994947 12994968 AATATGCACTGTACATTCCACA - TMSB4X 3'UTR 0.40 TCGA-SC-AA5Z-01 11 319917 319917 A C IFITM3 Missense_Mutation p.I108S 0.20 deleterious(0) possibly_damaging(0.904) TCGA-SC-AA5Z-01 11 55681449 55681449 C A OR5W2 Missense_Mutation p.G204C 0.15 tolerated(0.13) probably_damaging(0.999) TCGA-SC-AA5Z-01 11 616909 616909 G T CDHR5 3'UTR 0.10 TCGA-SC-AA5Z-01 11 92573895 92573895 A G FAT3 Silent p.T3512T 0.13 TCGA-SC-AA5Z-01 12 120534542 120534542 T C RAB35 3'UTR 0.11 TCGA-SC-AA5Z-01 12 120534632 120534632 T G RAB35 3'UTR 0.12 TCGA-SC-AA5Z-01 12 21427491 21427491 C T SLCO1A2 Missense_Mutation p.A569T 0.15 deleterious(0.01) possibly_damaging(0.844) TCGA-SC-AA5Z-01 12 6672667 6672667 T C NOP2 Silent p.P267P 0.05 TCGA-SC-AA5Z-01 16 88496231 88496231 G A ZNF469 Missense_Mutation p.D785N 0.14 benign(0.293) TCGA-SC-AA5Z-01 17 7577568 7577568 C A TP53 Missense_Mutation p.C238F 0.22 deleterious(0) probably_damaging(1) TCGA-SC-AA5Z-01 19 43512163 43512163 G T PSG11 3'UTR 0.30 TCGA-SC-AA5Z-01 1 185121026 185121026 T C TRMT1L Missense_Mutation p.N93D 0.17 deleterious_low_confidence(0.02) benign(0.063) TCGA-SC-AA5Z-01 22 26860036 26860036 G A HPS4 Silent p.P520P 0.22 TCGA-SC-AA5Z-01 22 30051622 30051625 GAGA - NF2 Frame_Shift_Del p.R187Lfs*21 0.31 TCGA-SC-AA5Z-01 2 74154166 74154166 C G DGUOK Missense_Mutation p.I43M 0.08 deleterious(0.02) possibly_damaging(0.831) TCGA-SC-AA5Z-01 3 56716726 56716726 G - FAM208A Frame_Shift_Del p.R104Gfs*13 0.19 TCGA-SC-AA5Z-01 4 125591481 125591481 T A ANKRD50 Missense_Mutation p.H984L 0.19 deleterious(0) probably_damaging(0.999) TCGA-SC-AA5Z-01 5 140220943 140220943 C T PCDHA8 Nonsense_Mutation p.R13* 0.27 TCGA-SC-AA5Z-01 5 157232916 157232916 T C CLINT1 Silent p.P300P 0.11 TCGA-SC-AA5Z-01 6 119245053 119245054 - A MCM9 Frame_Shift_Ins p.K182* 0.14 TCGA-SC-AA5Z-01 6 31543429 31543429 C T TNF 5'UTR 0.47 TCGA-SC-AA5Z-01 7 158716314 158716314 C T WDR60 Missense_Mutation p.T716I 0.17 deleterious(0) benign(0.006) TCGA-SC-AA5Z-01 7 64452086 64452086 C A ERV3-1 Missense_Mutation p.G440V 0.10 deleterious(0.01) probably_damaging(0.995) TCGA-SC-AA5Z-01 7 98645393 98645393 G C SMURF1 Missense_Mutation p.L382V 0.13 deleterious(0.03) benign(0.193) TCGA-SC-AA5Z-01 7 98645394 98645394 C A SMURF1 Missense_Mutation p.K381N 0.13 deleterious(0.01) probably_damaging(1) TCGA-SC-AA5Z-01 9 136594899 136594899 G A SARDH Silent p.I301I 0.21 TCGA-SC-AA5Z-01 X 79979363 79979363 C G BRWD3 Missense_Mutation p.G512R 0.41 deleterious(0) probably_damaging(0.999) TCGA-SH-A7BC-01 11 102323337 102323337 T G TMEM123 Silent p.R6R 0.07 TCGA-SH-A7BC-01 11 33720027 33720027 A G C11orf91 Missense_Mutation p.L177S 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-SH-A7BC-01 11 71946361 71946361 A G INPPL1 Missense_Mutation p.K842R 0.21 tolerated(1) benign(0.085) TCGA-SH-A7BC-01 12 14942027 14942027 G A WBP11 Silent p.L450L 0.19 TCGA-SH-A7BC-01 12 49375241 49375241 G T WNT1 Missense_Mutation p.A311S 0.22 tolerated(0.46) benign(0.003) TCGA-SH-A7BC-01 17 1494949 1494949 G C SLC43A2 Silent p.V213V 0.36 TCGA-SH-A7BC-01 17 1540091 1540091 G A SCARF1 Silent p.A515A 0.42 TCGA-SH-A7BC-01 17 27908792 27908792 C T GIT1 Missense_Mutation p.R229Q 0.17 deleterious(0) possibly_damaging(0.872) TCGA-SH-A7BC-01 17 40834668 40834668 G A CCR10 5'Flank 0.14 TCGA-SH-A7BC-01 17 61759195 61759195 G A MAP3K3 Missense_Mutation p.R222Q 0.26 tolerated(0.06) benign(0.26) TCGA-SH-A7BC-01 19 16466580 16466580 C T EPS15L1 Missense_Mutation p.R890Q 0.41 tolerated(1) benign(0.01) TCGA-SH-A7BC-01 19 1917766 1917766 C A SCAMP4 Missense_Mutation p.D27E 0.05 tolerated(1) benign(0.203) TCGA-SH-A7BC-01 1 151552159 151552159 A G TUFT1 Missense_Mutation p.D320G 0.23 deleterious(0) probably_damaging(0.994) TCGA-SH-A7BC-01 1 201779781 201779781 G A NAV1 Silent p.K1564K 0.25 TCGA-SH-A7BC-01 1 231472549 231472549 C T EXOC8 Missense_Mutation p.D315N 0.19 tolerated(0.14) benign(0.002) TCGA-SH-A7BC-01 1 237063572 237063572 A G MTR 3'UTR 0.20 TCGA-SH-A7BC-01 1 40095939 40095939 C T HEYL Silent p.T91T 0.34 TCGA-SH-A7BC-01 1 76363598 76363598 A G MSH4 Missense_Mutation p.T788A 0.19 tolerated(0.07) possibly_damaging(0.899) TCGA-SH-A7BC-01 21 45666317 45666317 A C DNMT3L Missense_Mutation p.F376C 0.15 deleterious(0) probably_damaging(1) TCGA-SH-A7BC-01 2 216271137 216271137 T C FN1 Missense_Mutation p.Y937C 0.13 deleterious(0) probably_damaging(1) TCGA-SH-A7BC-01 2 73519810 73519810 C T EGR4 Missense_Mutation p.G182D 0.39 deleterious(0) possibly_damaging(0.619) TCGA-SH-A7BC-01 3 109047804 109047804 G A DPPA4 Missense_Mutation p.L271F 0.13 deleterious(0.01) probably_damaging(0.973) TCGA-SH-A7BC-01 3 30691761 30691761 G A TGFBR2 Splice_Site p.X113_splice 0.29 TCGA-SH-A7BC-01 4 126238942 126238942 C A FAT4 Missense_Mutation p.A459E 0.10 probably_damaging(1) TCGA-SH-A7BC-01 4 178283570 178283571 - T NEIL3 Frame_Shift_Ins p.Q591Pfs*47 0.26 TCGA-SH-A7BC-01 4 57181656 57181656 C T KIAA1211 Missense_Mutation p.S663F 0.29 deleterious(0) possibly_damaging(0.683) TCGA-SH-A7BC-01 4 57181657 57181657 C T KIAA1211 Silent p.S663S 0.29 TCGA-SH-A7BC-01 5 140730631 140730631 G C PCDHGB1 Missense_Mutation p.E268D 0.18 deleterious(0.03) benign(0.168) TCGA-SH-A7BC-01 5 151166149 151166149 C T G3BP1 Intron 0.14 TCGA-SH-A7BC-01 5 32088189 32088189 G C PDZD2 Missense_Mutation p.E1545D 0.33 tolerated(0.19) possibly_damaging(0.708) TCGA-SH-A7BC-01 6 29977420 29977420 C T ZNRD1-AS1 Intron 0.38 TCGA-SH-A7BC-01 6 31687060 31687060 C T LY6G6C Missense_Mutation p.R64H 0.34 tolerated(0.19) probably_damaging(0.996) TCGA-SH-A7BC-01 6 33359713 33359716 CCAG - KIFC1 5'UTR 0.35 TCGA-SH-A7BC-01 7 150884251 150884251 G A ASB10 5'Flank 0.30 TCGA-SH-A7BC-01 7 86808877 86808877 A G DMTF1 Missense_Mutation p.D179G 0.26 deleterious(0.01) probably_damaging(0.936) TCGA-SH-A7BC-01 7 94173782 94173782 G A CASD1 Silent p.G472G 0.32 TCGA-SH-A7BC-01 8 124664965 124664965 G A KLHL38 Missense_Mutation p.R68W 0.05 deleterious(0) probably_damaging(0.968) TCGA-SH-A7BC-01 X 153775084 153775084 A G G6PD Translation_Start_Site p.M1? 0.39 deleterious_low_confidence(0) benign(0.002) TCGA-SH-A7BC-01 X 64722964 64722964 T A ZC3H12B Missense_Mutation p.Y796N 0.60 deleterious(0) probably_damaging(0.999) TCGA-SH-A7BD-01 11 117332309 117332309 G A DSCAML1 Missense_Mutation p.P1150L 0.32 deleterious(0) probably_damaging(0.981) TCGA-SH-A7BD-01 11 65271078 65271080 AAA - MALAT1 RNA 0.39 TCGA-SH-A7BD-01 11 9829610 9829610 G T SBF2 Silent p.T1460T 0.07 TCGA-SH-A7BD-01 12 13153169 13153169 T C HEBP1 5'UTR 0.29 TCGA-SH-A7BD-01 12 69140298 69140298 C G SLC35E3 Silent p.T47T 0.45 TCGA-SH-A7BD-01 15 41245734 41245734 G A CHAC1 Missense_Mutation p.G27R 0.48 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-SH-A7BD-01 15 42693910 42693910 G A CAPN3 Missense_Mutation p.V476M 0.40 tolerated(0.09) probably_damaging(0.951) TCGA-SH-A7BD-01 15 50519322 50519322 G T SLC27A2 Missense_Mutation p.M468I 0.42 tolerated(0.23) benign(0.009) TCGA-SH-A7BD-01 15 56683578 56683578 A G TEX9 Missense_Mutation p.D178G 0.48 deleterious(0.02) benign(0.316) TCGA-SH-A7BD-01 16 76669458 76669458 C A RP11-58C22.1 3'UTR 0.36 TCGA-SH-A7BD-01 17 34964914 34964914 T A MRM1 3'UTR 0.30 TCGA-SH-A7BD-01 17 57917232 57917233 - A VMP1 Frame_Shift_Ins p.I395Nfs*12 0.32 TCGA-SH-A7BD-01 19 4280352 4280352 G T SHD Nonsense_Mutation p.E98* 0.57 TCGA-SH-A7BD-01 19 53960633 53960634 AT - ZNF761 RNA 0.20 TCGA-SH-A7BD-01 19 53996212 53996212 C A ZNF813 3'UTR 0.40 TCGA-SH-A7BD-01 19 55881784 55881784 G C IL11 5'Flank 0.38 TCGA-SH-A7BD-01 1 100606409 100606409 C T TRMT13 Missense_Mutation p.A168V 0.75 deleterious(0.03) probably_damaging(0.951) TCGA-SH-A7BD-01 1 147092489 147092489 G A BCL9 Missense_Mutation p.R843Q 0.06 deleterious(0) probably_damaging(0.945) TCGA-SH-A7BD-01 1 183253848 183253849 - A NMNAT2 Frame_Shift_Ins p.V176Cfs*3 0.45 TCGA-SH-A7BD-01 1 224927214 224927214 C T CNIH3 3'UTR 0.57 TCGA-SH-A7BD-01 1 243716056 243716056 G A AKT3 Missense_Mutation p.L380F 0.39 deleterious(0.01) probably_damaging(0.99) TCGA-SH-A7BD-01 1 26603728 26603728 A C CEP85 Missense_Mutation p.T745P 0.40 deleterious(0) probably_damaging(1) TCGA-SH-A7BD-01 21 45553526 45553526 G A C21orf33 5'UTR 0.44 TCGA-SH-A7BD-01 22 24199210 24199210 C T SLC2A11 Intron 0.40 TCGA-SH-A7BD-01 2 110962575 110962575 A - NPHP1 5'UTR 0.26 TCGA-SH-A7BD-01 2 157185932 157185932 G A NR4A2 Missense_Mutation p.S256F 0.45 deleterious(0.02) possibly_damaging(0.753) TCGA-SH-A7BD-01 2 231988493 231988493 T C HTR2B 5'UTR 0.09 TCGA-SH-A7BD-01 2 74641777 74641777 C A C2orf81 Silent p.G482G 0.10 TCGA-SH-A7BD-01 2 74642309 74642309 A C C2orf81 Missense_Mutation p.L305W 0.36 tolerated(0.19) benign(0.002) TCGA-SH-A7BD-01 2 97788718 97788719 AT - ANKRD36 Frame_Shift_Del p.D194Vfs*28 0.21 TCGA-SH-A7BD-01 5 10258368 10258368 A - CCT5 Frame_Shift_Del p.K226Rfs*3 0.28 TCGA-SH-A7BD-01 5 138860784 138860784 A T TMEM173 Missense_Mutation p.L124Q 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-SH-A7BD-01 5 140966712 140966712 G A DIAPH1 Missense_Mutation p.S66F 0.21 unknown(0) TCGA-SH-A7BD-01 6 56476332 56476332 C T DST Silent p.Q1170Q 0.42 TCGA-SH-A7BD-01 7 135347313 135347313 C T C7orf73 5'UTR 0.39 TCGA-SH-A7BD-01 7 149477153 149477153 G A SSPO RNA 0.41 TCGA-SH-A7BD-01 7 94540630 94540630 A G PPP1R9A Missense_Mutation p.N402S 0.36 tolerated(0.11) benign(0.046) TCGA-SH-A7BD-01 8 53092719 53092719 G A ST18 Silent p.D80D 0.42 TCGA-SH-A7BD-01 X 105868506 105868506 A G CXorf57 Missense_Mutation p.T325A 0.90 deleterious(0.02) possibly_damaging(0.568) TCGA-SH-A7BH-01 10 37431116 37431116 G A ANKRD30A Missense_Mutation p.V375M 0.88 tolerated(0.05) benign(0.111) TCGA-SH-A7BH-01 10 38660047 38660047 C T HSD17B7P2 RNA 0.14 TCGA-SH-A7BH-01 10 50887741 50887741 G T C10orf53 5'UTR 0.75 TCGA-SH-A7BH-01 10 72511365 72511365 C A ADAMTS14 Silent p.L856L 0.78 TCGA-SH-A7BH-01 11 88300544 88300544 G A GRM5 Silent p.N769N 0.26 TCGA-SH-A7BH-01 12 117723963 117723963 G A NOS1 Silent p.H412H 0.26 TCGA-SH-A7BH-01 12 13103175 13103175 C T GPRC5D Missense_Mutation p.M48I 0.88 tolerated(1) benign(0.17) TCGA-SH-A7BH-01 12 2659137 2659137 C T CACNA1C Silent p.S473S 0.07 TCGA-SH-A7BH-01 12 44162044 44162044 G T IRAK4 Missense_Mutation p.G44C 0.80 deleterious(0.01) probably_damaging(0.999) TCGA-SH-A7BH-01 12 53433529 53433529 A C EIF4B Intron 0.83 TCGA-SH-A7BH-01 12 6204518 6204518 G A VWF Intron 0.41 TCGA-SH-A7BH-01 14 104205329 104205329 G A PPP1R13B Missense_Mutation p.S875L 0.29 deleterious(0) probably_damaging(0.99) TCGA-SH-A7BH-01 14 74825572 74825572 G A VRTN Missense_Mutation p.G696S 0.32 deleterious(0) probably_damaging(0.999) TCGA-SH-A7BH-01 14 94088094 94088094 G A UNC79 Silent p.G1328G 0.82 TCGA-SH-A7BH-01 16 30786456 30786456 G A RNF40 3'UTR 0.43 TCGA-SH-A7BH-01 16 457424 457424 G A DECR2 Splice_Site p.X68_splice 0.42 TCGA-SH-A7BH-01 17 18167294 18167294 T G MIEF2 Missense_Mutation p.V205G 0.83 deleterious(0) possibly_damaging(0.9) TCGA-SH-A7BH-01 17 21825473 21825473 C T FAM27L RNA 0.41 TCGA-SH-A7BH-01 17 38126870 38126870 C A GSDMA Silent p.S176S 0.85 TCGA-SH-A7BH-01 17 59885932 59885932 G A BRIP1 Missense_Mutation p.P272S 0.80 tolerated(0.07) possibly_damaging(0.477) TCGA-SH-A7BH-01 17 7578203 7578203 C A TP53 Missense_Mutation p.V216L 0.72 deleterious(0) probably_damaging(0.998) TCGA-SH-A7BH-01 18 20837428 20837428 C G CABLES1 3'UTR 0.35 TCGA-SH-A7BH-01 19 2211159 2211159 C T DOT1L Silent p.S471S 0.43 TCGA-SH-A7BH-01 19 46347430 46347430 G A SYMPK Silent p.A235A 0.42 TCGA-SH-A7BH-01 19 50029270 50029270 C T FCGRT Missense_Mutation p.P331L 0.37 tolerated(0.08) possibly_damaging(0.548) TCGA-SH-A7BH-01 19 51883798 51883798 T C LIM2 Missense_Mutation p.I183V 0.43 tolerated(0.21) probably_damaging(0.997) TCGA-SH-A7BH-01 19 6901952 6901952 A T EMR1 Missense_Mutation p.N194I 0.31 deleterious(0.02) benign(0.361) TCGA-SH-A7BH-01 1 149916658 149916658 C T OTUD7B Missense_Mutation p.G544S 0.43 tolerated(0.18) benign(0.103) TCGA-SH-A7BH-01 1 153916757 153916757 G C DENND4B Missense_Mutation p.P32A 0.39 tolerated(0.57) benign(0.107) TCGA-SH-A7BH-01 1 157522225 157522225 C G FCRL5 5'UTR 0.41 TCGA-SH-A7BH-01 1 161094248 161094248 G A DEDD Missense_Mutation p.A2V 0.44 tolerated_low_confidence(0.06) benign(0.026) TCGA-SH-A7BH-01 1 16907266 16907266 C T NBPF1 Missense_Mutation p.C522Y 0.06 tolerated(1) possibly_damaging(0.877) TCGA-SH-A7BH-01 1 201181941 201181941 T G IGFN1 Missense_Mutation p.D2640E 0.48 benign(0.239) TCGA-SH-A7BH-01 1 203152825 203152825 G A CHI3L1 Missense_Mutation p.L137F 0.38 tolerated(0.06) probably_damaging(0.965) TCGA-SH-A7BH-01 1 20977042 20977042 C T PINK1 Missense_Mutation p.S535L 0.27 deleterious(0) probably_damaging(0.999) TCGA-SH-A7BH-01 1 40030904 40030904 C T PABPC4 Silent p.E373E 0.21 TCGA-SH-A7BH-01 1 41303365 41303365 G A KCNQ4 Missense_Mutation p.G592R 0.60 tolerated(0.48) possibly_damaging(0.464) TCGA-SH-A7BH-01 1 86591412 86591412 A C COL24A1 Missense_Mutation p.F203V 0.37 deleterious(0) possibly_damaging(0.769) TCGA-SH-A7BH-01 20 34571994 34571994 C T CNBD2 Silent p.D166D 0.66 TCGA-SH-A7BH-01 21 36164876 36164876 C T RUNX1 Silent p.P333P 0.47 TCGA-SH-A7BH-01 22 22681942 22681942 A C IGLV1-50 Missense_Mutation p.T42P 0.35 deleterious_low_confidence(0.01) benign(0.048) TCGA-SH-A7BH-01 2 10101453 10101453 T C GRHL1 Missense_Mutation p.F186S 0.07 tolerated(0.11) possibly_damaging(0.634) TCGA-SH-A7BH-01 2 191236065 191236065 G A INPP1 Silent p.K379K 0.87 TCGA-SH-A7BH-01 2 8887280 8887280 A G KIDINS220 Missense_Mutation p.S1194P 0.07 tolerated(0.29) unknown(0) TCGA-SH-A7BH-01 3 183818170 183818170 T G HTR3E Missense_Mutation p.F4V 0.15 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-SH-A7BH-01 4 151827109 151827109 C A LRBA Nonsense_Mutation p.E546* 0.05 TCGA-SH-A7BH-01 4 36161048 36161048 G A ARAP2 Missense_Mutation p.A841V 0.76 deleterious(0) benign(0.254) TCGA-SH-A7BH-01 4 40440599 40440599 C T RBM47 Missense_Mutation p.M104I 0.78 deleterious(0.02) probably_damaging(0.985) TCGA-SH-A7BH-01 5 140207727 140207727 G A PCDHA6 Silent p.P17P 0.45 TCGA-SH-A7BH-01 5 39202986 39202986 G C FYB Missense_Mutation p.P36R 0.34 tolerated(0.06) benign(0.055) TCGA-SH-A7BH-01 6 117869098 117869098 C T DCBLD1 Intron 0.54 TCGA-SH-A7BH-01 6 2679617 2679617 C T MYLK4 Missense_Mutation p.V262M 0.22 deleterious(0) probably_damaging(0.998) TCGA-SH-A7BH-01 6 33260055 33260055 C T RGL2 Missense_Mutation p.A720T 0.25 deleterious(0) probably_damaging(0.995) TCGA-SH-A7BH-01 6 74351590 74351590 A T SLC17A5 Missense_Mutation p.Y117N 0.55 deleterious(0) probably_damaging(0.998) TCGA-SH-A7BH-01 7 102969493 102969493 C T DNAJC2 Intron 0.27 TCGA-SH-A7BH-01 7 128525197 128525197 G A KCP RNA 0.39 TCGA-SH-A7BH-01 7 129053471 129053471 G A AHCYL2 Missense_Mutation p.R468H 0.42 deleterious(0.04) benign(0.045) TCGA-SH-A7BH-01 7 139715619 139715619 C T TBXAS1 Silent p.D488D 0.45 TCGA-SH-A7BH-01 7 148709385 148709385 G A PDIA4 Missense_Mutation p.P228S 0.44 tolerated(0.11) possibly_damaging(0.701) TCGA-SH-A7BH-01 7 40789088 40789088 C A SUGCT Missense_Mutation p.S415Y 0.48 deleterious(0) benign(0.187) TCGA-SH-A7BH-01 7 51287484 51287484 C T COBL Missense_Mutation p.V67M 0.13 deleterious(0) probably_damaging(1) TCGA-SH-A7BH-01 9 130471897 130471897 G A C9orf117 Missense_Mutation p.E120K 0.10 deleterious(0) probably_damaging(0.997) TCGA-SH-A7BH-01 9 8486058 8486058 C T PTPRD Missense_Mutation p.G920E 0.64 deleterious(0) probably_damaging(0.997) TCGA-SH-A7BH-01 X 100118508 100118508 C T NOX1 Missense_Mutation p.R73H 0.39 deleterious(0) probably_damaging(1) TCGA-SH-A7BH-01 X 107097875 107097875 C T MID2 Missense_Mutation p.R253C 0.36 deleterious(0) possibly_damaging(0.891) TCGA-SH-A7BH-01 X 44938435 44938435 G A KDM6A Missense_Mutation p.E995K 0.20 deleterious(0) benign(0.173) TCGA-SH-A7BH-01 X 70523138 70523138 C T ITGB1BP2 Missense_Mutation p.P115L 0.62 tolerated(0.06) benign(0.014) TCGA-SH-A9CT-01 11 34515054 34515054 G T ELF5 Nonsense_Mutation p.Y119* 0.33 TCGA-SH-A9CT-01 11 4132848 4132848 T C RRM1 Silent p.Y155Y 0.43 TCGA-SH-A9CT-01 11 49805559 49805559 G A RP11-707M1.1 RNA 0.41 TCGA-SH-A9CT-01 11 55563493 55563493 C T OR5D14 Silent p.G154G 0.34 TCGA-SH-A9CT-01 11 74617316 74617316 A G XRRA1 Missense_Mutation p.V316A 0.32 deleterious(0) possibly_damaging(0.701) TCGA-SH-A9CT-01 12 49689096 49689096 C G PRPH Missense_Mutation p.S38C 0.06 deleterious(0.02) probably_damaging(0.921) TCGA-SH-A9CT-01 12 53880916 53880916 T C MAP3K12 Missense_Mutation p.D87G 0.35 deleterious(0.02) benign(0.012) TCGA-SH-A9CT-01 12 56881795 56881795 G A GLS2 Silent p.V36V 0.47 TCGA-SH-A9CT-01 13 41134471 41134471 G T FOXO1 Nonsense_Mutation p.S386* 0.55 TCGA-SH-A9CT-01 13 97639326 97639326 G T OXGR1 Missense_Mutation p.Q230K 0.39 tolerated(0.09) benign(0.005) TCGA-SH-A9CT-01 14 24887542 24887542 A G NYNRIN 3'UTR 0.44 TCGA-SH-A9CT-01 14 75475976 75475976 G T EIF2B2 3'UTR 0.48 TCGA-SH-A9CT-01 16 1143846 1143846 G T C1QTNF8 Missense_Mutation p.F138L 0.33 deleterious(0) probably_damaging(0.983) TCGA-SH-A9CT-01 17 73775249 73775249 G C H3F3B Missense_Mutation p.R3G 0.31 tolerated_low_confidence(0.06) benign(0) TCGA-SH-A9CT-01 19 18466723 18466723 C T PGPEP1 Missense_Mutation p.L36F 0.38 deleterious(0) benign(0.411) TCGA-SH-A9CT-01 19 19758561 19758561 C T ATP13A1 Silent p.A880A 0.27 TCGA-SH-A9CT-01 19 40275188 40275188 G A LEUTX 5'UTR 0.39 TCGA-SH-A9CT-01 19 50248506 50248506 C T TSKS Silent p.A380A 0.43 TCGA-SH-A9CT-01 19 5119677 5119677 C T KDM4B Missense_Mutation p.R377W 0.40 possibly_damaging(0.887) TCGA-SH-A9CT-01 19 9491456 9491456 A T ZNF177 Missense_Mutation p.Y150F 0.09 tolerated(0.22) benign(0.415) TCGA-SH-A9CT-01 1 227170650 227170650 A G ADCK3 Missense_Mutation p.E332G 0.12 deleterious(0.02) possibly_damaging(0.833) TCGA-SH-A9CT-01 1 32828299 32828299 C T TSSK3 5'UTR 0.59 TCGA-SH-A9CT-01 1 59248296 59248296 C G JUN Silent p.S149S 0.33 TCGA-SH-A9CT-01 22 26423305 26423312 CTCCTTGG - MYO18B Frame_Shift_Del p.S2456Wfs*18 0.52 TCGA-SH-A9CT-01 2 122004506 122004506 C T TFCP2L1 Missense_Mutation p.G182E 0.42 deleterious(0) probably_damaging(1) TCGA-SH-A9CT-01 2 54001521 54001521 T G CHAC2 Missense_Mutation p.S138R 0.39 deleterious(0) probably_damaging(0.999) TCGA-SH-A9CT-01 2 90198920 90198920 C A IGKV1D-12 Silent p.T27T 0.18 TCGA-SH-A9CT-01 2 96944405 96944405 C T SNRNP200 Missense_Mutation p.E1790K 0.35 deleterious(0) probably_damaging(0.925) TCGA-SH-A9CT-01 3 32032598 32032598 G C ZNF860 3'UTR 0.23 TCGA-SH-A9CT-01 3 63264391 63264391 C T SYNPR Silent p.P19P 0.43 TCGA-SH-A9CT-01 5 127636579 127636579 A G FBN2 Silent p.C2032C 0.34 TCGA-SH-A9CT-01 5 153372626 153372626 G A FAM114A2 Silent p.L476L 0.35 TCGA-SH-A9CT-01 6 135515560 135515560 T G MYB Missense_Mutation p.S304A 0.33 deleterious(0) probably_damaging(0.997) TCGA-SH-A9CT-01 6 153073308 153073308 C A VIP 5'UTR 0.28 TCGA-SH-A9CT-01 6 160858163 160858163 G A SLC22A3 Missense_Mutation p.R403H 0.32 deleterious(0.02) probably_damaging(0.943) TCGA-SH-A9CT-01 6 72975663 72975663 T G RIMS1 Missense_Mutation p.S1103R 0.35 tolerated(0.08) benign(0.342) TCGA-SH-A9CT-01 7 100280766 100280766 A G GIGYF1 Missense_Mutation p.W761R 0.34 deleterious(0) probably_damaging(0.986) TCGA-SH-A9CT-01 7 126698185 126698185 C T GRM8 Intron 0.40 TCGA-SH-A9CT-01 7 29438037 29438037 C T CHN2 Silent p.G75G 0.30 TCGA-SH-A9CT-01 7 50057851 50057851 G A ZPBP Silent p.Y256Y 0.39 TCGA-SH-A9CT-01 7 76256136 76256136 G A POMZP3 5'UTR 0.91 TCGA-SH-A9CT-01 7 99801705 99801705 G A STAG3 Missense_Mutation p.R921Q 0.28 deleterious(0) possibly_damaging(0.541) TCGA-SH-A9CT-01 8 67485666 67485666 G A MYBL1 Nonsense_Mutation p.Q516* 0.23 TCGA-SH-A9CT-01 9 113243572 113243572 T G SVEP1 Missense_Mutation p.E772A 0.58 benign(0.026) TCGA-SH-A9CU-01 10 127422701 127422701 A C EDRF1 Missense_Mutation p.R482S 0.39 deleterious(0) probably_damaging(0.943) TCGA-SH-A9CU-01 10 96334363 96334363 G A HELLS Missense_Mutation p.G253D 0.20 deleterious(0) probably_damaging(0.992) TCGA-SH-A9CU-01 10 97956685 97956685 G A BLNK Silent p.G410G 0.22 TCGA-SH-A9CU-01 11 17414621 17414621 C T ABCC8 Missense_Mutation p.A1555T 0.17 tolerated(0.65) benign(0.011) TCGA-SH-A9CU-01 11 33677642 33677642 G A KIAA1549L Missense_Mutation p.A1652T 0.10 tolerated(0.43) benign(0.028) TCGA-SH-A9CU-01 11 62397390 62397390 C T GANAB Missense_Mutation p.E567K 0.27 deleterious(0) probably_damaging(1) TCGA-SH-A9CU-01 11 64055208 64055234 GGCCTTTGTGGGGGCCTCGCTGCTCTT - GPR137 In_Frame_Del p.A200_F208del 0.23 TCGA-SH-A9CU-01 11 68609300 68609300 G T CPT1A 5'UTR 0.33 TCGA-SH-A9CU-01 11 72019608 72019608 G A CLPB Silent p.H373H 0.38 TCGA-SH-A9CU-01 12 123461759 123461759 C G OGFOD2 Intron 0.15 TCGA-SH-A9CU-01 12 306658 306658 G A SLC6A12 Silent p.I320I 0.35 TCGA-SH-A9CU-01 12 49072847 49072847 T C KANSL2 Missense_Mutation p.I173V 0.70 tolerated(0.44) benign(0.068) TCGA-SH-A9CU-01 12 49075719 49075719 G A KANSL2 Intron 0.63 TCGA-SH-A9CU-01 14 107083656 107083656 C T IGHV4-59 Silent p.L10L 0.43 TCGA-SH-A9CU-01 14 68241782 68241782 C G ZFYVE26 Missense_Mutation p.E1757D 0.59 tolerated(0.4) benign(0.145) TCGA-SH-A9CU-01 14 94931151 94931151 A T SERPINA9 Missense_Mutation p.S333T 0.70 tolerated(0.89) possibly_damaging(0.54) TCGA-SH-A9CU-01 15 89386815 89386815 C T ACAN Silent p.Y329Y 0.32 TCGA-SH-A9CU-01 16 30002156 30002156 C G TAOK2 3'Flank 0.21 TCGA-SH-A9CU-01 16 68308786 68308786 C T SLC7A6 Silent p.L53L 0.46 TCGA-SH-A9CU-01 16 84328551 84328551 T C WFDC1 5'UTR 0.42 TCGA-SH-A9CU-01 16 85839252 85839252 G A COX4I1 Intron 0.36 TCGA-SH-A9CU-01 16 89930254 89930254 G A SPIRE2 Missense_Mutation p.C588Y 0.34 deleterious(0) probably_damaging(0.997) TCGA-SH-A9CU-01 17 15961885 15961885 G C NCOR1 Missense_Mutation p.S1970R 0.69 benign(0.003) TCGA-SH-A9CU-01 19 37203377 37203377 T A ZNF567 Missense_Mutation p.D2E 0.37 deleterious(0.04) probably_damaging(0.994) TCGA-SH-A9CU-01 19 40319059 40319059 C A DYRK1B Missense_Mutation p.A229S 0.43 tolerated(0.63) benign(0.102) TCGA-SH-A9CU-01 19 55998384 55998384 C G NAT14 3'UTR 0.42 TCGA-SH-A9CU-01 19 58967061 58967061 T G ZNF324B Silent p.L250L 0.35 TCGA-SH-A9CU-01 19 7935721 7935721 C T CTD-3193O13.9 Silent p.P803P 0.35 TCGA-SH-A9CU-01 1 100547766 100547766 C A HIAT1 3'UTR 0.24 TCGA-SH-A9CU-01 1 115258779 115258779 C A NRAS Translation_Start_Site p.M1? 0.12 deleterious(0.03) benign(0.107) TCGA-SH-A9CU-01 1 154242737 154242737 C T UBAP2L Missense_Mutation p.S1077F 0.21 deleterious(0.01) probably_damaging(0.966) TCGA-SH-A9CU-01 1 185891577 185891577 T - HMCN1 Frame_Shift_Del p.S324Lfs*36 0.35 TCGA-SH-A9CU-01 1 67519759 67519759 C G SLC35D1 5'UTR 0.23 TCGA-SH-A9CU-01 1 86959979 86959979 C T CLCA1 Missense_Mutation p.T597M 0.07 tolerated(1) benign(0.003) TCGA-SH-A9CU-01 20 17475194 17475194 C T BFSP1 Missense_Mutation p.G508D 0.42 tolerated(0.24) benign(0.006) TCGA-SH-A9CU-01 20 30584395 30584395 G A XKR7 Missense_Mutation p.R292Q 0.44 tolerated(0.24) benign(0.015) TCGA-SH-A9CU-01 2 11720925 11720925 A G GREB1 Missense_Mutation p.N290D 0.37 tolerated(0.27) benign(0.001) TCGA-SH-A9CU-01 2 168114799 168114801 AGA - XIRP2 3'UTR 0.43 TCGA-SH-A9CU-01 2 241818364 241818364 G T AGXT 3'UTR 0.45 TCGA-SH-A9CU-01 3 12858462 12858462 C T CAND2 Silent p.D677D 0.43 TCGA-SH-A9CU-01 5 180377062 180377062 C T BTNL8 Missense_Mutation p.H341Y 0.36 deleterious(0) probably_damaging(0.929) TCGA-SH-A9CU-01 5 37224728 37224728 T C C5orf42 Silent p.A802A 0.24 TCGA-SH-A9CU-01 6 30558087 30558087 A T ABCF1 Missense_Mutation p.E768V 0.15 deleterious(0) possibly_damaging(0.864) TCGA-SH-A9CU-01 6 5086131 5086131 C G PPP1R3G Missense_Mutation p.L138V 0.24 deleterious(0) probably_damaging(0.991) TCGA-SH-A9CU-01 6 55145133 55145133 G T HCRTR2 Missense_Mutation p.M332I 0.05 tolerated(0.31) benign(0.017) TCGA-SH-A9CU-01 7 38813745 38813745 G A VPS41 Nonsense_Mutation p.Q328* 0.17 TCGA-SH-A9CU-01 7 63726829 63726829 G A ZNF679 Missense_Mutation p.C273Y 0.42 deleterious(0.01) probably_damaging(0.942) TCGA-SH-A9CU-01 7 96339014 96339014 T G SHFM1 Missense_Mutation p.E21A 0.39 deleterious(0.01) probably_damaging(0.973) TCGA-SH-A9CU-01 8 143624762 143624762 A G BAI1 Splice_Site p.X1472_splice 0.04 TCGA-SH-A9CU-01 8 22081745 22081745 T G PHYHIP Missense_Mutation p.H151P 0.41 tolerated(0.21) benign(0.003) TCGA-SH-A9CU-01 8 26510748 26510748 C G DPYSL2 Missense_Mutation p.L488V 0.29 tolerated(0.74) benign(0) TCGA-SH-A9CU-01 8 35093285 35093285 C T UNC5D 5'UTR 0.49 TCGA-SH-A9CU-01 8 41812894 41812894 G A KAT6A Silent p.V506V 0.19 TCGA-SH-A9CU-01 8 53073941 53073941 G A ST18 Missense_Mutation p.P530S 0.06 tolerated(0.39) benign(0.019) TCGA-SH-A9CU-01 X 152835152 152835152 C T ATP2B3 Intron 0.19 TCGA-TS-A7OU-01 10 88702088 88702088 G A MMRN2 Missense_Mutation p.A818V 0.46 tolerated(0.17) benign(0.018) TCGA-TS-A7OU-01 11 116706907 116706907 G C APOA1 Missense_Mutation p.Q141E 0.29 tolerated(0.26) benign(0.025) TCGA-TS-A7OU-01 11 121037415 121037416 - C TECTA Frame_Shift_Ins p.G1839Rfs*33 0.11 TCGA-TS-A7OU-01 11 60609626 60609626 G A CCDC86 Missense_Mutation p.R10Q 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-TS-A7OU-01 11 61913215 61913215 C T INCENP Silent p.L651L 0.31 TCGA-TS-A7OU-01 11 64044440 64044440 G A BAD Intron 0.24 TCGA-TS-A7OU-01 11 72287715 72287715 G A PDE2A 3'UTR 0.28 TCGA-TS-A7OU-01 11 74203231 74203231 G C LIPT2 Silent p.A215A 0.28 TCGA-TS-A7OU-01 11 74412686 74412686 C T CHRDL2 Missense_Mutation p.E376K 0.23 tolerated(0.35) benign(0.014) TCGA-TS-A7OU-01 12 22017390 22017390 A G ABCC9 Silent p.S740S 0.31 TCGA-TS-A7OU-01 12 58016715 58016715 C T SLC26A10 Nonsense_Mutation p.Q313* 0.31 TCGA-TS-A7OU-01 12 6182818 6182818 G - VWF Frame_Shift_Del p.Q322Rfs*135 0.34 TCGA-TS-A7OU-01 14 103871559 103871559 T C MARK3 Silent p.N66N 0.35 TCGA-TS-A7OU-01 15 42170777 42170777 T C SPTBN5 Missense_Mutation p.E1078G 0.32 possibly_damaging(0.804) TCGA-TS-A7OU-01 15 92988157 92988157 C T ST8SIA2 Silent p.R280R 0.38 TCGA-TS-A7OU-01 16 67221609 67221609 C G EXOC3L1 Missense_Mutation p.V187L 0.23 tolerated(0.22) benign(0.003) TCGA-TS-A7OU-01 17 62020382 62020382 G A SCN4A Silent p.C1364C 0.06 TCGA-TS-A7OU-01 17 6358733 6358733 C T PITPNM3 Silent p.S950S 0.31 TCGA-TS-A7OU-01 17 66270208 66270208 G A SLC16A6 Missense_Mutation p.P79L 0.29 deleterious(0) probably_damaging(1) TCGA-TS-A7OU-01 17 72846807 72846807 C T GRIN2C Missense_Mutation p.V405M 0.34 deleterious(0) probably_damaging(0.931) TCGA-TS-A7OU-01 17 7577550 7577550 C T TP53 Missense_Mutation p.G244D 0.40 deleterious(0) probably_damaging(1) TCGA-TS-A7OU-01 19 5133949 5133949 G A KDM4B Silent p.P654P 0.33 TCGA-TS-A7OU-01 1 169519899 169519904 CTTCAT - F5 In_Frame_Del p.D457_E458del 0.44 TCGA-TS-A7OU-01 1 201798340 201798340 G A IPO9 Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0) unknown(0) TCGA-TS-A7OU-01 1 231132940 231132940 C G ARV1 Silent p.V249V 0.39 TCGA-TS-A7OU-01 1 27177715 27177715 A T ZDHHC18 Missense_Mutation p.N310I 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-TS-A7OU-01 1 35334413 35334413 G A DLGAP3 Missense_Mutation p.P760S 0.10 deleterious(0.04) probably_damaging(0.96) TCGA-TS-A7OU-01 2 102641126 102641126 C T IL1R2 Missense_Mutation p.R295C 0.23 deleterious(0.01) probably_damaging(0.951) TCGA-TS-A7OU-01 2 153192066 153192072 GACGCGC A FMNL2 5'UTR 0.21 TCGA-TS-A7OU-01 2 206481651 206481651 A G PARD3B 3'Flank 0.06 TCGA-TS-A7OU-01 2 233710560 233710560 A C GIGYF2 Missense_Mutation p.M1163L 0.52 unknown(0) TCGA-TS-A7OU-01 2 96964614 96964614 C T SNRNP200 Missense_Mutation p.R274H 0.12 tolerated(0.08) benign(0.416) TCGA-TS-A7OU-01 3 119963115 119963115 G A GPR156 5'UTR 0.55 TCGA-TS-A7OU-01 3 32495735 32495735 G C CMTM7 Missense_Mutation p.A173P 0.27 deleterious(0.01) possibly_damaging(0.83) TCGA-TS-A7OU-01 3 33194849 33194849 G A SUSD5 Silent p.L425L 0.30 TCGA-TS-A7OU-01 4 71275532 71275532 G A PROL1 Missense_Mutation p.A163T 0.31 tolerated_low_confidence(1) unknown(0) TCGA-TS-A7OU-01 5 13922314 13922314 C G DNAH5 Missense_Mutation p.G188R 0.29 probably_damaging(0.953) TCGA-TS-A7OU-01 5 168110978 168110978 C G SLIT3 Missense_Mutation p.V1227L 0.25 deleterious(0.04) benign(0.319) TCGA-TS-A7OU-01 5 178413510 178413510 G A GRM6 Missense_Mutation p.S582F 0.30 deleterious(0.03) benign(0.308) TCGA-TS-A7OU-01 5 86410758 86410758 A T MIR4280 RNA 0.33 TCGA-TS-A7OU-01 6 152765554 152765554 G T SYNE1 Missense_Mutation p.H1277N 0.35 benign(0.083) TCGA-TS-A7OU-01 6 24576621 24576621 C G KIAA0319 Missense_Mutation p.S570T 0.29 deleterious(0.02) possibly_damaging(0.843) TCGA-TS-A7OU-01 6 99893762 99893762 G A USP45 Missense_Mutation p.S629F 0.42 deleterious(0) probably_damaging(0.994) TCGA-TS-A7OU-01 7 148979378 148979378 C T ZNF783 Missense_Mutation p.P529S 0.27 tolerated_low_confidence(1) benign(0.001) TCGA-TS-A7OU-01 7 26396717 26396717 G T SNX10 Intron 0.26 TCGA-TS-A7OU-01 7 53103525 53103525 C T POM121L12 Missense_Mutation p.P54L 0.36 deleterious(0) benign(0.011) TCGA-TS-A7OU-01 8 27327451 27327451 G A CHRNA2 Missense_Mutation p.L41F 0.32 tolerated(0.58) benign(0) TCGA-TS-A7OU-01 8 72211397 72211397 T C EYA1 Silent p.A237A 0.26 TCGA-TS-A7OU-01 X 2778091 2778091 G A GYG2 Silent p.A305A 0.73 TCGA-TS-A7OU-01 X 48925041 48925041 C T CCDC120 Missense_Mutation p.A429V 0.50 tolerated(0.19) benign(0.003) TCGA-TS-A7OY-01 10 103906908 103906908 A G PPRC1 Missense_Mutation p.M1387V 0.16 tolerated_low_confidence(0.14) benign(0.001) TCGA-TS-A7OY-01 11 43964932 43964932 G T C11orf96 3'Flank 0.12 TCGA-TS-A7OY-01 11 62476282 62476282 C A GNG3 3'UTR 0.14 TCGA-TS-A7OY-01 12 69986819 69986819 A G CCT2 Missense_Mutation p.K272E 0.16 tolerated(0.1) possibly_damaging(0.695) TCGA-TS-A7OY-01 12 94641830 94641830 C T PLXNC1 Missense_Mutation p.T847M 0.15 tolerated(0.05) possibly_damaging(0.684) TCGA-TS-A7OY-01 13 101910797 101910797 C T NALCN Silent p.A421A 0.11 TCGA-TS-A7OY-01 13 113337633 113337633 A G C13orf35 Missense_Mutation p.Y102C 0.17 tolerated_low_confidence(0.15) possibly_damaging(0.878) TCGA-TS-A7OY-01 15 25326341 25326341 T C SNORD116-12 3'Flank 0.09 TCGA-TS-A7OY-01 15 62948243 62948243 A G TLN2 Silent p.V206V 0.08 TCGA-TS-A7OY-01 17 2996271 2996271 C T OR1D2 Missense_Mutation p.S7N 0.13 deleterious(0.01) benign(0.188) TCGA-TS-A7OY-01 17 40716549 40716549 C T COASY Missense_Mutation p.S363F 0.09 deleterious(0) probably_damaging(0.999) TCGA-TS-A7OY-01 17 73569247 73569247 C T LLGL2 Silent p.G871G 0.18 TCGA-TS-A7OY-01 17 80888465 80888465 G A TBCD Missense_Mutation p.G1020D 0.15 tolerated(0.49) benign(0.013) TCGA-TS-A7OY-01 1 180167433 180167433 G A QSOX1 3'UTR 0.19 TCGA-TS-A7OY-01 1 200080431 200080431 C T NR5A2 Silent p.F404F 0.15 TCGA-TS-A7OY-01 1 31896615 31896615 C T SERINC2 Missense_Mutation p.R48C 0.14 deleterious(0) probably_damaging(1) TCGA-TS-A7OY-01 21 36259350 36259350 C T RUNX1 Silent p.L47L 0.12 TCGA-TS-A7OY-01 2 25471016 25471016 G A DNMT3A Nonsense_Mutation p.Q249* 0.24 TCGA-TS-A7OY-01 3 100489703 100489703 C G ABI3BP Missense_Mutation p.G831A 0.17 tolerated(0.25) possibly_damaging(0.521) TCGA-TS-A7OY-01 3 121448781 121448781 C G GOLGB1 Missense_Mutation p.L60F 0.11 probably_damaging(0.924) TCGA-TS-A7OY-01 3 148858925 148858925 A G HPS3 Silent p.G278G 0.13 TCGA-TS-A7OY-01 3 184044334 184044334 A G EIF4G1 Missense_Mutation p.N1088S 0.10 tolerated(0.12) possibly_damaging(0.599) TCGA-TS-A7OY-01 3 33450831 33450831 C T UBP1 Missense_Mutation p.G239D 0.08 deleterious(0) probably_damaging(0.997) TCGA-TS-A7OY-01 3 50231044 50231044 C A GNAT1 Missense_Mutation p.Q133K 0.17 tolerated(0.1) benign(0.259) TCGA-TS-A7OY-01 6 31915800 31915800 G A CFB Missense_Mutation p.S782N 0.10 deleterious(0) probably_damaging(0.998) TCGA-TS-A7OY-01 6 51656061 51656061 C T PKHD1 Missense_Mutation p.V2805I 0.11 tolerated(0.13) benign(0.277) TCGA-TS-A7OY-01 6 90572991 90572991 G A CASP8AP2 RNA 0.10 TCGA-TS-A7OY-01 7 151836855 151836855 G A KMT2C Nonsense_Mutation p.R4789* 0.06 TCGA-TS-A7OY-01 9 34380953 34380953 C T C9orf24 Missense_Mutation p.G217R 0.10 deleterious(0.03) possibly_damaging(0.6) TCGA-TS-A7OY-01 9 98229451 98229451 T C PTCH1 Missense_Mutation p.E836G 0.17 tolerated(0.23) benign(0.008) TCGA-TS-A7OY-01 X 140270787 140270787 T G LDOC1 Missense_Mutation p.E140D 0.32 tolerated_low_confidence(0.46) unknown(0) TCGA-TS-A7OZ-01 10 123843006 123843006 G A TACC2 Missense_Mutation p.E331K 0.31 benign(0.297) TCGA-TS-A7OZ-01 10 63851940 63851948 AGATCTGAG - ARID5B In_Frame_Del p.D907_S909del 0.38 TCGA-TS-A7OZ-01 11 20648388 20648388 G A SLC6A5 Silent p.T465T 0.24 TCGA-TS-A7OZ-01 11 44151688 44151688 G A EXT2 Silent p.Q424Q 0.31 TCGA-TS-A7OZ-01 11 55340030 55340030 A G OR4C16 Missense_Mutation p.M143V 0.04 tolerated(1) benign(0.001) TCGA-TS-A7OZ-01 11 55927677 55927677 C G OR8K5 Silent p.V39V 0.23 TCGA-TS-A7OZ-01 11 61067549 61067549 G A DDB1 3'UTR 0.32 TCGA-TS-A7OZ-01 11 62415236 62415236 C T INTS5 Silent p.V772V 0.30 TCGA-TS-A7OZ-01 11 73360064 73360064 C T PLEKHB1 Missense_Mutation p.P9L 0.22 deleterious_low_confidence(0.01) benign(0.35) TCGA-TS-A7OZ-01 11 770810 770810 G C PDDC1 3'UTR 0.27 TCGA-TS-A7OZ-01 12 95451605 95451605 G C NR2C1 Silent p.S198S 0.26 TCGA-TS-A7OZ-01 13 58207832 58207832 C T PCDH17 Silent p.N384N 0.22 TCGA-TS-A7OZ-01 14 31142497 31142497 G T SCFD1 Nonsense_Mutation p.E344* 0.10 TCGA-TS-A7OZ-01 14 53250187 53250187 C G GNPNAT1 Missense_Mutation p.L57F 0.22 deleterious(0) probably_damaging(0.999) TCGA-TS-A7OZ-01 15 48719927 48719927 C G FBN1 Missense_Mutation p.M2347I 0.23 benign(0.076) TCGA-TS-A7OZ-01 15 72864454 72864454 A G ARIH1 Missense_Mutation p.N388S 0.45 tolerated(0.31) benign(0.264) TCGA-TS-A7OZ-01 16 1826086 1826086 C T EME2 Silent p.S329S 0.21 TCGA-TS-A7OZ-01 16 2043150 2043150 G A SYNGR3 3'UTR 0.15 TCGA-TS-A7OZ-01 16 3543902 3543902 G T C16orf90 Silent p.T162T 0.24 TCGA-TS-A7OZ-01 17 18035764 18035764 C A MYO15A Intron 0.30 TCGA-TS-A7OZ-01 18 77730508 77730508 C T HSBP1L1 3'UTR 0.38 TCGA-TS-A7OZ-01 19 15483771 15483771 G C AKAP8 Missense_Mutation p.S251C 0.17 deleterious(0.01) possibly_damaging(0.847) TCGA-TS-A7OZ-01 19 41704522 41704522 G A CYP2S1 Missense_Mutation p.G217S 0.33 tolerated(0.53) possibly_damaging(0.696) TCGA-TS-A7OZ-01 19 49842133 49842133 G A CD37 Silent p.A208A 0.21 TCGA-TS-A7OZ-01 19 56243957 56243957 C A NLRP9 Missense_Mutation p.D414Y 0.39 deleterious(0) probably_damaging(1) TCGA-TS-A7OZ-01 19 7527041 7527041 G A ARHGEF18 Missense_Mutation p.R631Q 0.43 tolerated(0.1) benign(0.187) TCGA-TS-A7OZ-01 1 150418731 150418731 G T RPRD2 Nonsense_Mutation p.E242* 0.25 TCGA-TS-A7OZ-01 1 157650875 157650875 T A FCRL3 Missense_Mutation p.E618V 0.09 tolerated(0.13) benign(0.017) TCGA-TS-A7OZ-01 1 157650876 157650876 C A FCRL3 Nonsense_Mutation p.E618* 0.10 TCGA-TS-A7OZ-01 1 165378812 165378812 G C RXRG Silent p.V343V 0.23 TCGA-TS-A7OZ-01 1 20656741 20656741 T C VWA5B1 Silent p.L441L 0.17 TCGA-TS-A7OZ-01 1 25944768 25944768 G C MAN1C1 Missense_Mutation p.R160S 0.25 tolerated(0.75) benign(0.021) TCGA-TS-A7OZ-01 1 36026370 36026370 C G NCDN Silent p.A206A 0.36 TCGA-TS-A7OZ-01 1 79386013 79386013 A T ELTD1 Missense_Mutation p.L439Q 0.30 deleterious(0) probably_damaging(0.998) TCGA-TS-A7OZ-01 1 89150278 89150278 C T PKN2 Silent p.P5P 0.38 TCGA-TS-A7OZ-01 20 45017729 45017729 C A ELMO2 Missense_Mutation p.G125V 0.24 deleterious(0) probably_damaging(1) TCGA-TS-A7OZ-01 21 34144077 34144077 C G PAXBP1 5'UTR 0.28 TCGA-TS-A7OZ-01 22 30051642 30051642 C G NF2 Nonsense_Mutation p.Y192* 0.21 TCGA-TS-A7OZ-01 22 31591539 31591539 A T RNF185 Missense_Mutation p.R94W 0.43 deleterious(0) probably_damaging(1) TCGA-TS-A7OZ-01 22 38882362 38882362 C G DDX17 Missense_Mutation p.G592R 0.35 deleterious_low_confidence(0) benign(0.343) TCGA-TS-A7OZ-01 2 113498442 113498442 T C CKAP2L Silent p.E655E 0.19 TCGA-TS-A7OZ-01 2 231911893 231911896 ACAA - C2orf72 3'UTR 0.25 TCGA-TS-A7OZ-01 2 29092681 29092681 C T TRMT61B Missense_Mutation p.E155K 0.30 deleterious(0) probably_damaging(0.997) TCGA-TS-A7OZ-01 2 32640282 32640282 A T BIRC6 Missense_Mutation p.K641N 0.31 benign(0.327) TCGA-TS-A7OZ-01 2 32656128 32656128 A T BIRC6 Missense_Mutation p.H1073L 0.29 probably_damaging(0.986) TCGA-TS-A7OZ-01 2 3381479 3381479 G C TSSC1 5'UTR 0.33 TCGA-TS-A7OZ-01 2 36740711 36740711 C T CRIM1 Missense_Mutation p.S598L 0.25 tolerated(0.07) benign(0.024) TCGA-TS-A7OZ-01 2 74653375 74653375 C T RTKN Missense_Mutation p.V563M 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-TS-A7OZ-01 2 99220598 99220598 G C COA5 Nonsense_Mutation p.Y52* 0.22 TCGA-TS-A7OZ-01 3 132433951 132433951 G T NPHP3 Missense_Mutation p.P312H 0.23 tolerated(0.2) benign(0.001) TCGA-TS-A7OZ-01 3 52436825 52436827 CTT - BAP1 In_Frame_Del p.K651del 0.16 TCGA-TS-A7OZ-01 4 134071377 134071377 C T PCDH10 Nonsense_Mutation p.Q28* 0.23 TCGA-TS-A7OZ-01 4 57180839 57180839 G A KIAA1211 Missense_Mutation p.E391K 0.19 tolerated(0.33) unknown(0) TCGA-TS-A7OZ-01 6 127836055 127836055 G A SOGA3 Silent p.L413L 0.39 TCGA-TS-A7OZ-01 6 168479726 168479726 G T FRMD1 Missense_Mutation p.P17T 0.19 deleterious_low_confidence(0) benign(0.001) TCGA-TS-A7OZ-01 6 170151446 170151446 C G TCTE3 Missense_Mutation p.E37Q 0.40 deleterious(0.04) benign(0.052) TCGA-TS-A7OZ-01 6 26508981 26508981 T A BTN1A1 Missense_Mutation p.M387K 0.30 deleterious(0) possibly_damaging(0.873) TCGA-TS-A7OZ-01 7 123302919 123302919 C T LMOD2 Missense_Mutation p.P427S 0.17 tolerated(0.18) benign(0.063) TCGA-TS-A7OZ-01 7 50595868 50595868 C A DDC Missense_Mutation p.E227D 0.33 tolerated(0.23) benign(0.002) TCGA-TS-A7OZ-01 8 28218541 28218541 G T ZNF395 Nonsense_Mutation p.S34* 0.07 TCGA-TS-A7OZ-01 8 38883350 38883350 A G ADAM9 Missense_Mutation p.M315V 0.24 deleterious(0) probably_damaging(0.998) TCGA-TS-A7OZ-01 9 124094861 124094861 A G GSN Missense_Mutation p.M777V 0.19 tolerated(0.27) benign(0) TCGA-TS-A7OZ-01 9 136215833 136215833 G A RPL7A Silent p.K20K 0.25 TCGA-TS-A7OZ-01 X 50659422 50659422 C A BMP15 Missense_Mutation p.L332I 0.50 deleterious(0.05) probably_damaging(0.964) TCGA-TS-A7P0-01 10 115391703 115391703 C T NRAP Nonsense_Mutation p.W551* 0.30 TCGA-TS-A7P0-01 10 127677161 127677161 G A FANK1 Missense_Mutation p.R78K 0.15 tolerated(0.44) benign(0.003) TCGA-TS-A7P0-01 10 127677162 127677162 G T FANK1 Missense_Mutation p.R78S 0.15 tolerated(0.35) benign(0.192) TCGA-TS-A7P0-01 10 73058942 73058942 G T UNC5B Missense_Mutation p.D916Y 0.13 tolerated(0.3) possibly_damaging(0.835) TCGA-TS-A7P0-01 11 49598004 49598004 G T RP11-707M1.1 RNA 0.17 TCGA-TS-A7P0-01 11 61136084 61136084 G T TMEM138 Missense_Mutation p.C131F 0.13 tolerated(0.45) benign(0.001) TCGA-TS-A7P0-01 11 66039253 66039253 A G RAB1B Intron 0.19 TCGA-TS-A7P0-01 12 111321929 111321929 G A CCDC63 Missense_Mutation p.G317R 0.69 tolerated(0.09) possibly_damaging(0.663) TCGA-TS-A7P0-01 12 112036776 112036776 C T ATXN2 Silent p.Q181Q 0.12 TCGA-TS-A7P0-01 12 40687446 40687447 AA - LRRK2 Frame_Shift_Del p.R931Tfs*10 0.29 TCGA-TS-A7P0-01 12 44902756 44902756 G A NELL2 Silent p.I854I 0.21 TCGA-TS-A7P0-01 12 6935377 6935377 C A GPR162 Missense_Mutation p.D358E 0.10 tolerated(0.06) probably_damaging(0.967) TCGA-TS-A7P0-01 12 81007499 81007499 C T PTPRQ Nonsense_Mutation p.R1679* 0.12 TCGA-TS-A7P0-01 13 20716372 20716372 G - GJA3 Frame_Shift_Del p.S353Afs*46 0.11 TCGA-TS-A7P0-01 13 58208699 58208699 G C PCDH17 Silent p.L673L 0.55 TCGA-TS-A7P0-01 13 77459428 77459428 C A KCTD12 Nonsense_Mutation p.E286* 0.51 TCGA-TS-A7P0-01 13 99092475 99092475 G A FARP1 Missense_Mutation p.S872N 0.49 tolerated(0.19) benign(0.423) TCGA-TS-A7P0-01 14 24538642 24538642 C T LRRC16B 3'UTR 0.38 TCGA-TS-A7P0-01 15 75968474 75968474 C T CSPG4 Missense_Mutation p.R2129K 0.18 tolerated(0.78) benign(0.001) TCGA-TS-A7P0-01 16 11868213 11868213 G A ZC3H7A Missense_Mutation p.A261V 0.29 tolerated(0.5) benign(0.047) TCGA-TS-A7P0-01 16 21092971 21092971 G A DNAH3 Silent p.G985G 0.06 TCGA-TS-A7P0-01 16 28601724 28601724 T A CCDC101 Missense_Mutation p.I176N 0.15 deleterious(0) probably_damaging(1) TCGA-TS-A7P0-01 16 30616227 30616227 C A ZNF689 Missense_Mutation p.K287N 0.09 deleterious(0) probably_damaging(0.988) TCGA-TS-A7P0-01 16 4387577 4387577 C T GLIS2 3'UTR 0.15 TCGA-TS-A7P0-01 16 824479 824479 C T MSLNL Missense_Mutation p.G588R 0.19 benign(0.062) TCGA-TS-A7P0-01 16 89351108 89351108 G C ANKRD11 Missense_Mutation p.S614R 0.18 benign(0.093) TCGA-TS-A7P0-01 19 39589757 39589757 C T PAPL Silent p.G160G 0.16 TCGA-TS-A7P0-01 19 47712529 47712529 A G SAE1 3'UTR 0.33 TCGA-TS-A7P0-01 19 51920123 51920123 C G SIGLEC10 Missense_Mutation p.W168S 0.29 tolerated(0.11) benign(0.411) TCGA-TS-A7P0-01 1 108292181 108292181 C T VAV3 Missense_Mutation p.C432Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-TS-A7P0-01 1 156646855 156646855 C G NES Missense_Mutation p.D68H 0.13 deleterious(0) probably_damaging(0.993) TCGA-TS-A7P0-01 1 160385624 160385624 C T VANGL2 5'UTR 0.35 TCGA-TS-A7P0-01 1 169562851 169562851 C T SELP Missense_Mutation p.R800K 0.20 tolerated(0.16) benign(0.041) TCGA-TS-A7P0-01 1 169698719 169698719 C T SELE Missense_Mutation p.D271N 0.20 tolerated(0.4) benign(0.222) TCGA-TS-A7P0-01 1 206646615 206646615 G - IKBKE Frame_Shift_Del p.Q17Rfs*21 0.15 TCGA-TS-A7P0-01 1 216500980 216500980 G A USH2A Silent p.V267V 0.14 TCGA-TS-A7P0-01 1 43212787 43212787 C T LEPRE1 Nonsense_Mutation p.W737* 0.29 TCGA-TS-A7P0-01 20 35437120 35437120 G A SOGA1 Silent p.L870L 0.10 TCGA-TS-A7P0-01 21 33371213 33371213 T G HUNK Missense_Mutation p.S621A 0.26 tolerated_low_confidence(0.1) probably_damaging(0.99) TCGA-TS-A7P0-01 22 31484055 31484055 G T SMTN Missense_Mutation p.K52N 0.32 deleterious(0) probably_damaging(0.997) TCGA-TS-A7P0-01 2 175202175 175202204 GGCGGCGGCAGCGGCGGCGGCGGCAGCGGC - SP9 In_Frame_Del p.A461_A470del 0.23 TCGA-TS-A7P0-01 2 179474840 179474840 G A TTN Missense_Mutation p.P17138L 0.16 TCGA-TS-A7P0-01 2 209308107 209308107 C T PTH2R Missense_Mutation p.H182Y 0.24 deleterious(0) probably_damaging(1) TCGA-TS-A7P0-01 2 95542316 95542316 G A TEKT4 Silent p.E370E 0.20 TCGA-TS-A7P0-01 2 99234630 99234630 G A UNC50 Splice_Site p.X215_splice 0.12 TCGA-TS-A7P0-01 3 127429460 127429460 C T MGLL Missense_Mutation p.G187R 0.36 deleterious(0) benign(0.441) TCGA-TS-A7P0-01 3 160155767 160155767 G A TRIM59 Missense_Mutation p.S402F 0.10 deleterious(0.03) benign(0.029) TCGA-TS-A7P0-01 3 39229841 39229841 C G XIRP1 Missense_Mutation p.E366Q 0.15 tolerated(0.11) benign(0.052) TCGA-TS-A7P0-01 3 9594137 9594137 G C LHFPL4 Missense_Mutation p.T76S 0.13 tolerated(0.45) benign(0.023) TCGA-TS-A7P0-01 4 144480925 144480925 G T SMARCA5 3'Flank 0.10 TCGA-TS-A7P0-01 4 79204064 79204064 C G FRAS1 Missense_Mutation p.P400A 0.37 probably_damaging(1) TCGA-TS-A7P0-01 4 99955477 99955477 G T METAP1 Missense_Mutation p.R88I 0.12 deleterious(0) benign(0) TCGA-TS-A7P0-01 5 1393874 1393874 A T SLC6A3 3'UTR 0.50 TCGA-TS-A7P0-01 5 140741624 140741624 G A PCDHGB2 Missense_Mutation p.R641H 0.28 deleterious(0.02) possibly_damaging(0.495) TCGA-TS-A7P0-01 5 176918838 176918838 G A PDLIM7 Missense_Mutation p.P123L 0.33 tolerated(0.32) benign(0.067) TCGA-TS-A7P0-01 5 54404054 54404054 G C GZMA Missense_Mutation p.W153C 0.07 deleterious(0) probably_damaging(1) TCGA-TS-A7P0-01 5 79473168 79473169 - A SERINC5 Frame_Shift_Ins p.F143Lfs*37 0.10 TCGA-TS-A7P0-01 6 34261226 34261226 A G NUDT3 Splice_Site p.X114_splice 0.06 TCGA-TS-A7P0-01 7 104766771 104766771 G T SRPK2 Silent p.I613I 0.10 TCGA-TS-A7P0-01 7 142168846 142168846 G A TRBV5-4 5'UTR 0.08 TCGA-TS-A7P0-01 8 113662451 113662451 A T CSMD3 Missense_Mutation p.H1044Q 0.06 deleterious(0.04) probably_damaging(0.974) TCGA-TS-A7P0-01 8 117864868 117864868 T C RAD21 Missense_Mutation p.D414G 0.07 deleterious(0.03) benign(0.024) TCGA-TS-A7P0-01 8 131916252 131916252 G T ADCY8 Silent p.L559L 0.14 TCGA-TS-A7P0-01 8 133141963 133141963 C T KCNQ3 Missense_Mutation p.R722Q 0.07 tolerated(0.71) benign(0.001) TCGA-TS-A7P0-01 8 13357501 13357501 C T DLC1 Missense_Mutation p.R27H 0.12 tolerated_low_confidence(0.5) benign(0) TCGA-TS-A7P0-01 8 15615299 15615299 G T TUSC3 Splice_Site p.X343_splice 0.44 TCGA-TS-A7P0-01 8 22009067 22009067 C G LGI3 Missense_Mutation p.S255T 0.24 deleterious(0.01) benign(0.092) TCGA-TS-A7P0-01 8 52321696 52321696 G A PXDNL Missense_Mutation p.R830W 0.10 deleterious(0.02) possibly_damaging(0.901) TCGA-TS-A7P0-01 9 103055252 103055252 A C INVS Silent p.R905R 0.15 TCGA-TS-A7P0-01 9 140056439 140056439 G C GRIN1 Missense_Mutation p.D532H 0.20 deleterious(0) probably_damaging(0.992) TCGA-TS-A7P0-01 9 84609590 84609590 C A SPATA31D1 Missense_Mutation p.A1402D 0.21 deleterious(0) possibly_damaging(0.855) TCGA-TS-A7P0-01 X 129205031 129205031 T C ELF4 Missense_Mutation p.M265V 0.27 deleterious(0) possibly_damaging(0.718) TCGA-TS-A7P0-01 X 73045591 73045591 T C XIST RNA 0.16 TCGA-TS-A7P1-01 11 32635867 32635867 T C CCDC73 Missense_Mutation p.Q666R 0.42 tolerated(0.07) possibly_damaging(0.795) TCGA-TS-A7P1-01 11 3688772 3688772 G A CHRNA10 Silent p.D195D 0.09 TCGA-TS-A7P1-01 12 21958176 21958176 C G ABCC9 Intron 0.35 TCGA-TS-A7P1-01 12 49221718 49221718 G A CACNB3 3'UTR 0.12 TCGA-TS-A7P1-01 13 20796921 20796921 A T GJB6 Missense_Mutation p.N233K 0.34 tolerated(0.92) benign(0.001) TCGA-TS-A7P1-01 14 65197799 65197808 TGGTGGAGGA - PLEKHG3 Frame_Shift_Del p.V199Pfs*5 0.41 TCGA-TS-A7P1-01 14 97319453 97319453 G A VRK1 Missense_Mutation p.G176R 0.37 deleterious(0.02) benign(0.185) TCGA-TS-A7P1-01 16 1841289 1841289 A G IGFALS Missense_Mutation p.L415P 0.37 tolerated(0.07) probably_damaging(0.998) TCGA-TS-A7P1-01 16 66545861 66545861 C T TK2 3'UTR 0.39 TCGA-TS-A7P1-01 16 76592407 76592407 T C CNTNAP4 Missense_Mutation p.F1179L 0.27 tolerated(0.05) probably_damaging(0.999) TCGA-TS-A7P1-01 17 62969469 62969469 A G AMZ2P1 RNA 0.50 TCGA-TS-A7P1-01 19 20748611 20748611 C T ZNF737 5'Flank 0.42 TCGA-TS-A7P1-01 19 40540668 40540671 TACA - ZNF780B Frame_Shift_Del p.C699Rfs*38 0.31 TCGA-TS-A7P1-01 19 43433664 43433664 T C PSG7 Silent p.G213G 0.40 TCGA-TS-A7P1-01 19 620441 620441 G A POLRMT Missense_Mutation p.A896V 0.43 deleterious(0) probably_damaging(0.971) TCGA-TS-A7P1-01 1 155154335 155154335 C T TRIM46 Silent p.H532H 0.34 TCGA-TS-A7P1-01 1 157490296 157490296 C T FCRL5 Missense_Mutation p.A853T 0.29 tolerated(1) benign(0) TCGA-TS-A7P1-01 1 27623568 27623568 G A WDTC1 Missense_Mutation p.G326S 0.38 tolerated(0.15) benign(0.009) TCGA-TS-A7P1-01 1 39568758 39568758 G C MACF1 Intron 0.21 TCGA-TS-A7P1-01 1 43904656 43904656 C T SZT2 Silent p.T2171T 0.41 TCGA-TS-A7P1-01 2 25462033 25462033 G A DNMT3A Missense_Mutation p.R792C 0.41 deleterious(0) probably_damaging(0.996) TCGA-TS-A7P1-01 2 27169912 27169912 G T DPYSL5 3'UTR 0.37 TCGA-TS-A7P1-01 2 97365317 97365317 G C FER1L5 RNA 0.37 TCGA-TS-A7P1-01 3 36898064 36898064 T C TRANK1 Missense_Mutation p.Y1006C 0.39 deleterious(0.02) benign(0.111) TCGA-TS-A7P1-01 3 52436847 52436847 G - BAP1 Frame_Shift_Del p.A644Efs*11 0.35 TCGA-TS-A7P1-01 4 88047332 88047332 C T AFF1 Silent p.A885A 0.62 TCGA-TS-A7P1-01 5 41055957 41055957 G T MROH2B Missense_Mutation p.A307D 0.57 tolerated(0.06) possibly_damaging(0.905) TCGA-TS-A7P1-01 6 1313072 1313072 G T FOXQ1 Missense_Mutation p.D45Y 0.34 deleterious(0) probably_damaging(0.993) TCGA-TS-A7P1-01 6 1313085 1313085 A G FOXQ1 Missense_Mutation p.N49S 0.34 tolerated(0.05) probably_damaging(0.935) TCGA-TS-A7P1-01 7 4011114 4011128 CCACCCTCCTGAGGA - SDK1 In_Frame_Del p.P579_H583del 0.34 TCGA-TS-A7P1-01 8 113241043 113241043 G T CSMD3 Missense_Mutation p.L3636I 0.50 deleterious(0.03) probably_damaging(0.997) TCGA-TS-A7P1-01 8 55538815 55538815 A G RP1 Silent p.K791K 0.38 TCGA-TS-A7P3-01 11 118352578 118352578 T A KMT2A Silent p.P1261P 0.20 TCGA-TS-A7P3-01 11 132306028 132306028 C T OPCML Missense_Mutation p.V297M 0.23 deleterious(0.03) possibly_damaging(0.612) TCGA-TS-A7P3-01 11 695811 695811 C T TMEM80 Missense_Mutation p.A20V 0.18 tolerated(0.25) unknown(0) TCGA-TS-A7P3-01 12 122460060 122460060 C T BCL7A Silent p.V21V 0.16 TCGA-TS-A7P3-01 13 39262281 39262281 G A FREM2 Missense_Mutation p.R267H 0.20 deleterious(0.02) benign(0.007) TCGA-TS-A7P3-01 14 89081975 89081975 G A EML5 3'UTR 0.23 TCGA-TS-A7P3-01 15 79296322 79296322 G A RASGRF1 Silent p.A773A 0.25 TCGA-TS-A7P3-01 16 31488250 31488250 C T TGFB1I1 Silent p.C346C 0.10 TCGA-TS-A7P3-01 16 57295869 57295869 G A PLLP Silent p.L83L 0.24 TCGA-TS-A7P3-01 16 71772954 71772954 G C AP1G1 Missense_Mutation p.T723S 0.23 tolerated(1) benign(0) TCGA-TS-A7P3-01 17 37099988 37099988 T C FBXO47 Silent p.G265G 0.23 TCGA-TS-A7P3-01 17 8633443 8633443 C A CCDC42 3'UTR 0.30 TCGA-TS-A7P3-01 19 50185298 50185298 G A PRMT1 Silent p.K108K 0.27 TCGA-TS-A7P3-01 19 547306 547306 G A GZMM Missense_Mutation p.G28R 0.23 deleterious(0) probably_damaging(1) TCGA-TS-A7P3-01 19 56466192 56466192 C T NLRP8 Silent p.F256F 0.16 TCGA-TS-A7P3-01 1 155753858 155753858 G A GON4L Missense_Mutation p.S604F 0.16 deleterious(0) probably_damaging(0.992) TCGA-TS-A7P3-01 21 45773700 45773700 C A TRPM2 Missense_Mutation p.S39R 0.30 tolerated_low_confidence(0.08) benign(0.005) TCGA-TS-A7P3-01 2 132287531 132287531 C G CCDC74A Intron 0.20 TCGA-TS-A7P3-01 2 179451960 179451960 A G TTN Silent p.H21326H 0.23 TCGA-TS-A7P3-01 2 74642047 74642059 TTCGGCCCGGGCC - C2orf81 Frame_Shift_Del p.K388Nfs*39 0.25 TCGA-TS-A7P3-01 3 121383390 121383390 T C GOLGB1 Silent p.L3249L 0.25 TCGA-TS-A7P3-01 3 148881677 148881677 G A HPS3 Missense_Mutation p.V844I 0.22 tolerated(0.63) benign(0) TCGA-TS-A7P3-01 3 46750654 46750654 C T TMIE Missense_Mutation p.R84W 0.35 deleterious(0) probably_damaging(0.997) TCGA-TS-A7P3-01 4 72316936 72316936 C T SLC4A4 Nonsense_Mutation p.Q414* 0.14 TCGA-TS-A7P3-01 6 116937961 116937961 C A RSPH4A Missense_Mutation p.R59S 0.17 tolerated_low_confidence(0.71) benign(0.045) TCGA-TS-A7P3-01 6 144269245 144269245 C T PLAGL1 Missense_Mutation p.G10D 0.19 tolerated(0.21) probably_damaging(0.933) TCGA-TS-A7P3-01 6 56505390 56505390 G A DST Missense_Mutation p.R144C 0.05 probably_damaging(0.944) TCGA-TS-A7P3-01 8 42911552 42911552 A C FNTA Missense_Mutation p.Q21H 0.24 tolerated_low_confidence(0.08) unknown(0) TCGA-TS-A7P3-01 8 86573425 86573425 G A REXO1L1P 3'UTR 0.12 TCGA-TS-A7P3-01 9 131390210 131390210 C A SPTAN1 Nonsense_Mutation p.Y2232* 0.23 TCGA-TS-A7P3-01 9 98238443 98238443 T G PTCH1 Splice_Site p.X535_splice 0.29 TCGA-TS-A7P3-01 X 102931171 102931171 T C MORF4L2 Missense_Mutation p.Y262C 0.29 deleterious(0) probably_damaging(0.999) TCGA-TS-A7P6-01 10 74953308 74953308 G A FAM149B1 Missense_Mutation p.A167T 0.33 tolerated(0.38) benign(0.109) TCGA-TS-A7P6-01 11 64603603 64603603 C T CDC42BPG Missense_Mutation p.A552T 0.56 tolerated(0.48) benign(0.001) TCGA-TS-A7P6-01 11 94554772 94554772 G A AMOTL1 Missense_Mutation p.G400R 0.19 tolerated(0.15) possibly_damaging(0.9) TCGA-TS-A7P6-01 11 9917500 9917500 G A SBF2 Missense_Mutation p.A640V 0.09 deleterious(0.01) benign(0.191) TCGA-TS-A7P6-01 12 113610361 113610361 G A DDX54 Missense_Mutation p.T359M 0.32 tolerated(0.06) benign(0.092) TCGA-TS-A7P6-01 12 130912761 130912761 C G RIMBP2 Missense_Mutation p.R775T 0.10 deleterious(0) probably_damaging(0.999) TCGA-TS-A7P6-01 12 85266984 85266984 G - SLC6A15 Frame_Shift_Del p.H331Tfs*33 0.08 TCGA-TS-A7P6-01 14 23235738 23235738 C A OXA1L Missense_Mutation p.T3K 0.28 possibly_damaging(0.742) TCGA-TS-A7P6-01 14 36217935 36217935 A G RALGAPA1 Silent p.N369N 0.27 TCGA-TS-A7P6-01 16 75513347 75513347 C T CHST6 Missense_Mutation p.R127H 0.30 deleterious(0) probably_damaging(1) TCGA-TS-A7P6-01 16 90109728 90109728 C T GAS8 Missense_Mutation p.A471V 0.32 deleterious(0) benign(0.082) TCGA-TS-A7P6-01 17 48538719 48538719 G A ACSF2 Silent p.A147A 0.12 TCGA-TS-A7P6-01 17 681986 681986 T C GLOD4 Splice_Site p.X31_splice 0.37 TCGA-TS-A7P6-01 18 580374 580374 G A CETN1 5'UTR 0.30 TCGA-TS-A7P6-01 19 15852559 15852559 G T OR10H3 Missense_Mutation p.M119I 0.26 deleterious(0) benign(0.259) TCGA-TS-A7P6-01 19 19774141 19774141 G A ATP13A1 Missense_Mutation p.A112V 0.29 tolerated(0.77) benign(0.001) TCGA-TS-A7P6-01 19 40029895 40029895 C T EID2 3'UTR 0.17 TCGA-TS-A7P6-01 19 55751382 55751382 G A PPP6R1 Missense_Mutation p.R488W 0.46 deleterious(0) possibly_damaging(0.72) TCGA-TS-A7P6-01 1 240256303 240256303 C T FMN2 Silent p.G298G 0.32 TCGA-TS-A7P6-01 1 84874074 84874074 G A DNASE2B Intron 0.07 TCGA-TS-A7P6-01 1 87805739 87805739 T A LMO4 Missense_Mutation p.C115S 0.23 deleterious(0) probably_damaging(0.999) TCGA-TS-A7P6-01 21 43523667 43523667 C A C21orf128 3'UTR 0.32 TCGA-TS-A7P6-01 5 178311160 178311160 A G ZNF354B Silent p.Q569Q 0.12 TCGA-TS-A7P6-01 6 35436770 35436770 C T RPL10A Missense_Mutation p.P43S 0.48 deleterious(0.03) possibly_damaging(0.799) TCGA-TS-A7P6-01 7 15652027 15652027 C T MEOX2 Silent p.E300E 0.31 TCGA-TS-A7P6-01 7 82584540 82584540 G A PCLO Missense_Mutation p.A1910V 0.27 unknown(0) TCGA-TS-A7P6-01 8 139661909 139661909 T C COL22A1 Missense_Mutation p.K1149R 0.32 unknown(0) TCGA-TS-A7P6-01 8 30699676 30699676 A G TEX15 Silent p.N2286N 0.34 TCGA-TS-A7P6-01 9 138516030 138516030 G A GLT6D1 Silent p.N248N 0.32 TCGA-TS-A7P6-01 9 139336141 139336141 C T SEC16A 3'UTR 0.33 TCGA-TS-A7P6-01 9 71628032 71628032 C G PRKACG Missense_Mutation p.S326T 0.36 tolerated(0.06) benign(0.016) TCGA-TS-A7P6-01 X 108911456 108911456 T C ACSL4 Missense_Mutation p.M438V 0.52 tolerated(0.66) benign(0.181) TCGA-TS-A7P8-01 11 123777514 123777514 A T OR8D4 Missense_Mutation p.I126F 0.05 deleterious(0) possibly_damaging(0.646) TCGA-TS-A7P8-01 11 132182623 132182623 T A NTM Intron 0.32 TCGA-TS-A7P8-01 11 134029822 134029822 T A NCAPD3 Missense_Mutation p.T1278S 0.10 tolerated(0.95) benign(0.007) TCGA-TS-A7P8-01 11 4824923 4824923 G T OR52R1 Missense_Mutation p.Q230K 0.07 tolerated(0.2) benign(0.002) TCGA-TS-A7P8-01 11 65714833 65714833 C T TSGA10IP RNA 0.12 TCGA-TS-A7P8-01 12 14829834 14829834 G A GUCY2C Missense_Mutation p.P301L 0.14 deleterious(0.03) benign(0.049) TCGA-TS-A7P8-01 14 106330046 106330046 T C IGHJ5 Silent p.G9G 0.27 TCGA-TS-A7P8-01 14 106725254 106725254 G A IGHV3-23 Silent p.L100L 0.14 TCGA-TS-A7P8-01 14 106725267 106725267 C G IGHV3-23 Missense_Mutation p.K95N 0.12 deleterious_low_confidence(0.05) benign(0.165) TCGA-TS-A7P8-01 14 106725293 106725293 A G IGHV3-23 Missense_Mutation p.F87L 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.529) TCGA-TS-A7P8-01 14 86088319 86088319 C T FLRT2 Missense_Mutation p.A154V 0.12 deleterious(0) probably_damaging(0.967) TCGA-TS-A7P8-01 15 62214661 62214662 - A VPS13C Frame_Shift_Ins p.K2304* 0.10 TCGA-TS-A7P8-01 15 77770746 77770746 G A HMG20A Silent p.L267L 0.29 TCGA-TS-A7P8-01 16 70589000 70589000 A G SF3B3 Missense_Mutation p.N534S 0.12 tolerated(0.06) possibly_damaging(0.648) TCGA-TS-A7P8-01 16 7568364 7568364 C T RBFOX1 Silent p.S101S 0.27 TCGA-TS-A7P8-01 16 77356297 77356297 T A ADAMTS18 Missense_Mutation p.K700I 0.14 deleterious(0) probably_damaging(0.989) TCGA-TS-A7P8-01 17 49091596 49091596 G A SPAG9 Silent p.L404L 0.06 TCGA-TS-A7P8-01 17 79880876 79880876 T A MAFG Missense_Mutation p.M32L 0.10 tolerated(0.6) benign(0.006) TCGA-TS-A7P8-01 19 1388928 1388928 G T NDUFS7 Missense_Mutation p.W73C 0.13 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-TS-A7P8-01 19 38865444 38865444 C T PSMD8 Missense_Mutation p.A68V 0.12 tolerated_low_confidence(0.29) possibly_damaging(0.499) TCGA-TS-A7P8-01 19 4048233 4048233 C A ZBTB7A Missense_Mutation p.K424N 0.08 deleterious(0) possibly_damaging(0.688) TCGA-TS-A7P8-01 19 59061570 59061572 GTT - TRIM28 In_Frame_Del p.L751del 0.12 TCGA-TS-A7P8-01 19 8808778 8808778 A T ACTL9 Missense_Mutation p.S92T 0.16 tolerated(0.71) benign(0.003) TCGA-TS-A7P8-01 1 118693189 118693189 C A SPAG17 Missense_Mutation p.G98C 0.09 deleterious(0.02) probably_damaging(0.922) TCGA-TS-A7P8-01 1 156877929 156877929 G T PEAR1 Missense_Mutation p.E304D 0.10 tolerated(0.2) probably_damaging(0.952) TCGA-TS-A7P8-01 1 176833538 176833538 C T ASTN1 Missense_Mutation p.S1256N 0.08 tolerated_low_confidence(0.06) benign(0.155) TCGA-TS-A7P8-01 1 26131685 26131685 C G SEPN1 Missense_Mutation p.S152R 0.12 tolerated(0.13) probably_damaging(0.943) TCGA-TS-A7P8-01 20 3052842 3052842 C T OXT Silent p.Y80Y 0.17 TCGA-TS-A7P8-01 20 34261573 34261573 A G NFS1 Silent p.Y390Y 0.11 TCGA-TS-A7P8-01 21 34100255 34100255 A G SYNJ1 Splice_Site p.X32_splice 0.14 TCGA-TS-A7P8-01 22 23040701 23040701 G C IGLV2-23 Missense_Mutation p.S50T 0.33 tolerated_low_confidence(0.44) benign(0.003) TCGA-TS-A7P8-01 22 23040725 23040729 AACAG C IGLV2-23 Frame_Shift_Del p.Q58Pfs*10 0.10 TCGA-TS-A7P8-01 22 23055595 23055595 G C IGLV3-21 Silent p.G86G 0.24 TCGA-TS-A7P8-01 2 15601405 15601405 A T NBAS Silent p.L753L 0.10 TCGA-TS-A7P8-01 2 167760267 167760267 G A XIRP2 Missense_Mutation p.R92Q 0.08 benign(0.003) TCGA-TS-A7P8-01 2 179412667 179412667 G A TTN Missense_Mutation p.A31229V 0.11 TCGA-TS-A7P8-01 2 198266611 198266611 C T SF3B1 Missense_Mutation p.G742D 0.26 tolerated(0.06) possibly_damaging(0.774) TCGA-TS-A7P8-01 2 238253262 238253262 A G COL6A3 Missense_Mutation p.S2467P 0.11 unknown(0) TCGA-TS-A7P8-01 2 27322362 27322362 A C KHK Missense_Mutation p.D243A 0.12 tolerated(0.13) benign(0.08) TCGA-TS-A7P8-01 2 85622746 85622746 C T CAPG Missense_Mutation p.R299Q 0.06 deleterious(0.02) benign(0.011) TCGA-TS-A7P8-01 2 97862515 97862515 A T ANKRD36 Missense_Mutation p.K881N 0.05 tolerated_low_confidence(0.09) benign(0.403) TCGA-TS-A7P8-01 3 134079033 134079033 G A AMOTL2 Nonsense_Mutation p.R600* 0.22 TCGA-TS-A7P8-01 3 138738879 138738879 G A PRR23B Missense_Mutation p.R209C 0.08 tolerated(0.18) possibly_damaging(0.88) TCGA-TS-A7P8-01 4 6377653 6377653 T C PPP2R2C Missense_Mutation p.T114A 0.24 deleterious(0) possibly_damaging(0.899) TCGA-TS-A7P8-01 5 110843124 110843124 C A STARD4 Missense_Mutation p.G3V 0.09 tolerated_low_confidence(0.25) benign(0.008) TCGA-TS-A7P8-01 5 140784198 140784198 C T PCDHGA9 Missense_Mutation p.P560L 0.07 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-TS-A7P8-01 5 37303429 37303429 A C NUP155 Missense_Mutation p.Y1084D 0.07 deleterious(0) probably_damaging(0.962) TCGA-TS-A7P8-01 5 89802429 89802429 G A POLR3G Missense_Mutation p.D175N 0.06 tolerated(0.44) unknown(0) TCGA-TS-A7P8-01 6 167343254 167343254 T A RNASET2 Missense_Mutation p.Q198L 0.06 deleterious(0) probably_damaging(0.993) TCGA-TS-A7P8-01 6 75827165 75827165 G A COL12A1 Silent p.D2484D 0.31 TCGA-TS-A7P8-01 7 140534562 140534562 C T BRAF Missense_Mutation p.M117I 0.09 tolerated(0.19) benign(0) TCGA-TS-A7P8-01 8 121301876 121301876 C G COL14A1 Silent p.V1369V 0.06 TCGA-TS-A7P8-01 9 101494739 101494739 C G ANKS6 3'UTR 0.11 TCGA-TS-A7P8-01 9 36233918 36233918 T C GNE Silent p.T358T 0.31 TCGA-TS-A7P8-01 9 38595646 38595646 C T ANKRD18A Missense_Mutation p.R564H 0.12 tolerated(1) benign(0) TCGA-TS-A7P8-01 9 79320666 79320666 G T PRUNE2 Missense_Mutation p.A2175E 0.38 tolerated(0.39) benign(0.014) TCGA-TS-A7PB-01 10 46999640 46999640 G A GPRIN2 Missense_Mutation p.G254R 0.13 deleterious(0.05) benign(0.038) TCGA-TS-A7PB-01 13 73321012 73321012 G A BORA Silent p.E415E 0.24 TCGA-TS-A7PB-01 13 77852966 77852966 A T MYCBP2 Missense_Mutation p.S187R 0.29 probably_damaging(0.974) TCGA-TS-A7PB-01 14 73425433 73425433 T C DCAF4 Missense_Mutation p.S470P 0.21 tolerated(0.2) benign(0.011) TCGA-TS-A7PB-01 14 73425440 73425440 T G DCAF4 Missense_Mutation p.L472R 0.26 deleterious(0) probably_damaging(0.966) TCGA-TS-A7PB-01 15 45654362 45654362 T C GATM Missense_Mutation p.H406R 0.26 deleterious(0) probably_damaging(1) TCGA-TS-A7PB-01 16 55525753 55525753 C T MMP2 Silent p.H407H 0.08 TCGA-TS-A7PB-01 17 45351806 45351806 G T ITGB3 Missense_Mutation p.R34L 0.15 tolerated(0.13) possibly_damaging(0.752) TCGA-TS-A7PB-01 17 45821658 45821658 C T TBX21 Missense_Mutation p.T289M 0.35 deleterious(0) probably_damaging(0.928) TCGA-TS-A7PB-01 17 4789261 4789261 G T MINK1 Splice_Site p.X232_splice 0.32 TCGA-TS-A7PB-01 17 64299112 64299112 C A PRKCA Missense_Mutation p.T48N 0.26 deleterious(0) probably_damaging(0.973) TCGA-TS-A7PB-01 17 75878065 75878065 G A FLJ45079 Silent p.Y136Y 0.23 TCGA-TS-A7PB-01 17 79226231 79226231 G A SLC38A10 Missense_Mutation p.A570V 0.24 tolerated(0.48) benign(0.001) TCGA-TS-A7PB-01 17 80008308 80008308 C T RFNG Silent p.E181E 0.32 TCGA-TS-A7PB-01 19 10745522 10745522 T G SLC44A2 Missense_Mutation p.F305C 0.24 deleterious(0) benign(0.306) TCGA-TS-A7PB-01 19 1235900 1235900 G A C19orf26 Silent p.I41I 0.36 TCGA-TS-A7PB-01 19 58772963 58772963 C T ZNF544 Missense_Mutation p.R331C 0.32 tolerated(0.16) benign(0.057) TCGA-TS-A7PB-01 1 152324055 152324055 G A FLG2 Silent p.H2069H 0.24 TCGA-TS-A7PB-01 1 158435499 158435499 G A OR10K1 Missense_Mutation p.V50M 0.24 tolerated(0.22) benign(0.141) TCGA-TS-A7PB-01 1 161198229 161198229 G A TOMM40L Missense_Mutation p.V207I 0.30 tolerated(0.62) benign(0.027) TCGA-TS-A7PB-01 1 235922365 235922378 GGCCAACGGCCAAC T LYST Frame_Shift_Del p.V2259Kfs*33 0.24 TCGA-TS-A7PB-01 1 236706943 236706943 C G LGALS8 Silent p.A253A 0.30 TCGA-TS-A7PB-01 1 37337807 37337807 C T GRIK3 Silent p.A238A 0.23 TCGA-TS-A7PB-01 1 84543803 84543803 C T RP11-486G15.2 5'Flank 0.11 TCGA-TS-A7PB-01 20 2297849 2297849 C T TGM3 Nonsense_Mutation p.R269* 0.35 TCGA-TS-A7PB-01 20 55093270 55093270 C G RTFDC1 Silent p.R290R 0.22 TCGA-TS-A7PB-01 2 179588619 179588619 C T TTN Missense_Mutation p.G7123R 0.26 TCGA-TS-A7PB-01 2 54851947 54851947 G A SPTBN1 Missense_Mutation p.E397K 0.08 deleterious(0.02) probably_damaging(0.96) TCGA-TS-A7PB-01 2 74595119 74595119 G A DCTN1 Missense_Mutation p.A665V 0.35 deleterious(0.01) probably_damaging(0.926) TCGA-TS-A7PB-01 3 186508170 186508171 - T RFC4 Frame_Shift_Ins p.G276Efs*12 0.22 TCGA-TS-A7PB-01 3 47098850 47098850 G A SETD2 Nonsense_Mutation p.Q2142* 0.34 TCGA-TS-A7PB-01 4 100518240 100518240 G A MTTP Missense_Mutation p.R309Q 0.28 tolerated(1) benign(0.002) TCGA-TS-A7PB-01 4 110790945 110790945 G A LRIT3 Missense_Mutation p.G347D 0.25 deleterious(0) probably_damaging(1) TCGA-TS-A7PB-01 4 25162103 25162104 - A SEPSECS 5'Flank 0.12 TCGA-TS-A7PB-01 5 140176808 140176808 G A PCDHA2 Silent p.Q753Q 0.24 TCGA-TS-A7PB-01 5 145435738 145435738 A G SH3RF2 Missense_Mutation p.Q506R 0.28 tolerated(0.1) benign(0.011) TCGA-TS-A7PB-01 5 154214435 154214435 G A FAXDC2 Silent p.L36L 0.33 TCGA-TS-A7PB-01 5 75427791 75427791 C T SV2C Silent p.D72D 0.32 TCGA-TS-A7PB-01 6 30122134 30122134 C T TRIM10 Missense_Mutation p.C353Y 0.26 deleterious(0) probably_damaging(1) TCGA-TS-A7PB-01 6 33259908 33259908 C T RGL2 Missense_Mutation p.G769R 0.23 deleterious(0) probably_damaging(0.998) TCGA-TS-A7PB-01 6 47522379 47522379 C T CD2AP Intron 0.36 TCGA-TS-A7PB-01 7 73752825 73752825 G A CLIP2 Missense_Mutation p.A57T 0.24 tolerated(0.32) benign(0.001) TCGA-TS-A7PB-01 8 42038011 42038011 T C PLAT Missense_Mutation p.E361G 0.36 deleterious(0.01) benign(0.313) TCGA-TS-A7PB-01 9 124044200 124044201 GT - GSN-AS1 RNA 0.17 TCGA-TS-A7PB-01 9 35714261 35714261 G C TLN1 Missense_Mutation p.A1032G 0.24 deleterious(0.02) benign(0.132) TCGA-TS-A7PB-01 9 79867216 79867216 T - VPS13A Frame_Shift_Del p.F746Sfs*14 0.21 TCGA-TS-A7PB-01 X 9912855 9912855 G A SHROOM2 Missense_Mutation p.D1496N 0.63 deleterious(0) possibly_damaging(0.737) TCGA-TS-A8AI-01 10 108923788 108923788 G A SORCS1 Missense_Mutation p.A166V 0.34 tolerated(0.39) benign(0.397) TCGA-TS-A8AI-01 10 118893939 118893939 C G VAX1 Silent p.A195A 0.37 TCGA-TS-A8AI-01 10 27326822 27326822 G A ANKRD26 Missense_Mutation p.T846I 0.50 tolerated(0.07) benign(0.148) TCGA-TS-A8AI-01 11 1093275 1093275 G A MUC2 Silent p.S1698S 0.06 TCGA-TS-A8AI-01 11 119535453 119535453 G C PVRL1 3'UTR 0.24 TCGA-TS-A8AI-01 11 55563108 55563108 A G OR5D14 Missense_Mutation p.Q26R 0.21 tolerated(0.18) benign(0.12) TCGA-TS-A8AI-01 12 111801175 111801175 G A FAM109A Silent p.D32D 0.25 TCGA-TS-A8AI-01 12 3600435 3600435 C A PRMT8 5'UTR 0.75 TCGA-TS-A8AI-01 12 42853070 42853070 C - PRICKLE1 3'UTR 0.10 TCGA-TS-A8AI-01 13 100153952 100153952 G A TM9SF2 Missense_Mutation p.R31H 0.19 tolerated(0.28) benign(0.309) TCGA-TS-A8AI-01 13 37598221 37598224 TTGA - SUPT20H Frame_Shift_Del p.N513Kfs*36 0.33 TCGA-TS-A8AI-01 14 39555048 39555048 C T SEC23A Missense_Mutation p.R249Q 0.34 tolerated(0.11) benign(0.134) TCGA-TS-A8AI-01 16 31142625 31142625 C G KAT8 3'UTR 0.21 TCGA-TS-A8AI-01 16 72142713 72142713 C A DHX38 Nonsense_Mutation p.Y1090* 0.18 TCGA-TS-A8AI-01 17 19284002 19284002 C G MAPK7 Silent p.R160R 0.28 TCGA-TS-A8AI-01 17 36486011 36486011 G A GPR179 Silent p.S1147S 0.23 TCGA-TS-A8AI-01 17 7123495 7123495 C G ACADVL Silent p.P62P 0.21 TCGA-TS-A8AI-01 18 2937980 2937980 G A LPIN2 Missense_Mutation p.S293L 0.25 tolerated(0.05) possibly_damaging(0.844) TCGA-TS-A8AI-01 19 11943012 11943012 G A ZNF440 Missense_Mutation p.E341K 0.20 tolerated(0.73) benign(0.047) TCGA-TS-A8AI-01 19 46327129 46327129 C T SYMPK Missense_Mutation p.R832Q 0.28 deleterious(0.01) possibly_damaging(0.543) TCGA-TS-A8AI-01 1 152057955 152057955 G T TCHHL1 Missense_Mutation p.Q735K 0.21 deleterious(0.01) benign(0.015) TCGA-TS-A8AI-01 1 218536727 218536727 C T TGFB2 Missense_Mutation p.S133F 0.22 deleterious(0.05) benign(0) TCGA-TS-A8AI-01 1 27942264 27942264 G A FGR Silent p.I258I 0.25 TCGA-TS-A8AI-01 1 67109303 67109303 G C SGIP1 Missense_Mutation p.K120N 0.35 deleterious(0.02) probably_damaging(0.977) TCGA-TS-A8AI-01 20 18142708 18142708 G T CSRP2BP Silent p.V309V 0.29 TCGA-TS-A8AI-01 20 43926885 43926885 G A MATN4 Missense_Mutation p.R451C 0.26 probably_damaging(0.994) TCGA-TS-A8AI-01 21 46271416 46271416 G A PTTG1IP 3'UTR 0.23 TCGA-TS-A8AI-01 22 50705321 50705321 G A MAPK11 Intron 0.15 TCGA-TS-A8AI-01 2 225266033 225266033 G A FAM124B Silent p.D151D 0.26 TCGA-TS-A8AI-01 2 241496733 241496733 G C ANKMY1 5'UTR 0.27 TCGA-TS-A8AI-01 2 85097644 85097644 C T TRABD2A Missense_Mutation p.R125H 0.26 deleterious(0.04) probably_damaging(0.927) TCGA-TS-A8AI-01 3 157188105 157188105 G T VEPH1 Missense_Mutation p.Q118K 0.25 deleterious(0.02) probably_damaging(0.982) TCGA-TS-A8AI-01 3 170150608 170150608 G A CLDN11 3'UTR 0.26 TCGA-TS-A8AI-01 3 38889084 38889084 A G SCN11A Missense_Mutation p.S1493P 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-TS-A8AI-01 3 9100150 9100150 C T SRGAP3 Missense_Mutation p.D270N 0.14 deleterious(0) probably_damaging(0.995) TCGA-TS-A8AI-01 4 126412390 126412390 A G FAT4 Missense_Mutation p.I4805V 0.32 probably_damaging(0.926) TCGA-TS-A8AI-01 5 141059760 141059760 G A ARAP3 Silent p.P98P 0.23 TCGA-TS-A8AI-01 5 176024595 176024595 G A GPRIN1 Silent p.R747R 0.25 TCGA-TS-A8AI-01 6 165809810 165809810 C A PDE10A Nonsense_Mutation p.E473* 0.19 TCGA-TS-A8AI-01 6 22136742 22136742 G T CASC14 RNA 0.25 TCGA-TS-A8AI-01 6 26104304 26104304 C G HIST1H4C Silent p.G43G 0.39 TCGA-TS-A8AI-01 6 32025893 32025893 G A TNXB Silent p.H2589H 0.35 TCGA-TS-A8AI-01 6 84936103 84936103 G A KIAA1009 Silent p.N3N 0.17 TCGA-TS-A8AI-01 6 90484359 90484359 C A MDN1 Nonsense_Mutation p.E639* 0.23 TCGA-TS-A8AI-01 7 6537326 6537326 C T GRID2IP 3'Flank 0.07 TCGA-TS-A8AI-01 7 99662130 99662130 C A ZSCAN21 Missense_Mutation p.H438N 0.21 deleterious(0) probably_damaging(0.998) TCGA-TS-A8AI-01 9 130548372 130548372 G A CDK9 5'UTR 0.26 TCGA-TS-A8AI-01 9 136857289 136857289 G C VAV2 Missense_Mutation p.R38G 0.20 deleterious(0.02) possibly_damaging(0.825) TCGA-TS-A8AS-01 10 101121985 101121985 A C CNNM1 Missense_Mutation p.E620D 0.21 deleterious(0.01) benign(0.383) TCGA-TS-A8AS-01 11 64948362 64948364 CTC - AP003068.23 In_Frame_Del p.E212del 0.10 TCGA-TS-A8AS-01 11 65618539 65618539 T C SNX32 Missense_Mutation p.F206S 0.07 deleterious(0.05) benign(0.043) TCGA-TS-A8AS-01 11 68193445 68193445 G T LRP5 Splice_Site p.X1143_splice 0.16 TCGA-TS-A8AS-01 14 94464546 94464546 A T LINC00521 RNA 0.10 TCGA-TS-A8AS-01 15 91043486 91043486 C T IQGAP1 3'UTR 0.31 TCGA-TS-A8AS-01 16 4790560 4790560 G T C16orf71 Missense_Mutation p.G228V 0.15 tolerated(0.07) possibly_damaging(0.876) TCGA-TS-A8AS-01 17 33849589 33849589 G C SLFN12L 5'UTR 0.11 TCGA-TS-A8AS-01 17 78321226 78321226 G C RNF213 Missense_Mutation p.G3031R 0.07 benign(0.086) TCGA-TS-A8AS-01 19 33991870 33991870 C A PEPD Missense_Mutation p.V123L 0.09 deleterious(0.01) benign(0.402) TCGA-TS-A8AS-01 19 39805246 39805246 G A LRFN1 Missense_Mutation p.P244L 0.14 deleterious(0) benign(0.02) TCGA-TS-A8AS-01 19 45496448 45496448 T G CLPTM1 3'UTR 0.40 TCGA-TS-A8AS-01 19 55424384 55424384 C A NCR1 3'UTR 0.12 TCGA-TS-A8AS-01 1 118166314 118166314 T A FAM46C Missense_Mutation p.F275Y 0.11 deleterious(0) probably_damaging(0.982) TCGA-TS-A8AS-01 1 145474434 145474434 T C ANKRD34A Missense_Mutation p.L369S 0.09 tolerated(0.09) possibly_damaging(0.829) TCGA-TS-A8AS-01 1 64089159 64089159 G C PGM1 Missense_Mutation p.G10R 0.11 deleterious_low_confidence(0.03) benign(0.013) TCGA-TS-A8AS-01 20 4228498 4228498 C T ADRA1D Silent p.P369P 0.15 TCGA-TS-A8AS-01 21 31965054 31965054 G A KRTAP6-3 Missense_Mutation p.R90K 0.10 unknown(0) TCGA-TS-A8AS-01 22 29536316 29536316 A G KREMEN1 Silent p.T407T 0.10 TCGA-TS-A8AS-01 2 71658557 71658557 G A ZNF638 Silent p.E1917E 0.15 TCGA-TS-A8AS-01 3 112729937 112729937 T C C3orf17 Missense_Mutation p.N290D 0.17 tolerated(0.33) benign(0.117) TCGA-TS-A8AS-01 3 122825648 122825648 A G PDIA5 Missense_Mutation p.D147G 0.15 deleterious(0.01) benign(0.354) TCGA-TS-A8AS-01 3 157188284 157188284 A G VEPH1 Missense_Mutation p.V58A 0.22 deleterious(0) probably_damaging(0.998) TCGA-TS-A8AS-01 3 47604114 47604114 G A CSPG5 Silent p.N559N 0.16 TCGA-TS-A8AS-01 8 145621911 145621911 T A CPSF1 Nonsense_Mutation p.K910* 0.11 TCGA-TS-A8AS-01 9 110045953 110045953 A G RAD23B Missense_Mutation p.I15V 0.07 tolerated(0.18) unknown(0) TCGA-TS-A8AS-01 9 117266817 117266817 G A DFNB31 Missense_Mutation p.R89C 0.12 deleterious(0) possibly_damaging(0.836) TCGA-TS-A8AV-01 11 35515690 35515690 G A PAMR1 Silent p.C68C 0.06 TCGA-TS-A8AV-01 13 21549376 21549376 A C LATS2 Missense_Mutation p.L967R 0.05 deleterious(0.01) probably_damaging(0.992) TCGA-TS-A8AV-01 16 53191378 53191378 G C CHD9 Missense_Mutation p.Q459H 0.05 possibly_damaging(0.66) TCGA-TS-A8AV-01 16 67424843 67424843 C A TPPP3 Missense_Mutation p.V58F 0.07 deleterious(0) probably_damaging(0.951) TCGA-TS-A8AV-01 19 37905148 37905148 C A ZNF569 Nonsense_Mutation p.E138* 0.09 TCGA-TS-A8AV-01 1 45475781 45475781 C A HECTD3 Silent p.P212P 0.06 TCGA-TS-A8AV-01 22 37770524 37770524 G C ELFN2 Missense_Mutation p.L351V 0.04 deleterious(0) probably_damaging(0.998) TCGA-TS-A8AV-01 6 7586020 7586020 G A DSP Missense_Mutation p.R2842H 0.05 benign(0.001) TCGA-TS-A8AV-01 6 94120842 94120842 G A EPHA7 Missense_Mutation p.T70I 0.06 deleterious(0.05) probably_damaging(0.999) TCGA-TS-A8AY-01 11 46911978 46911978 G A LRP4 Missense_Mutation p.R589C 0.24 deleterious(0) probably_damaging(0.994) TCGA-TS-A8AY-01 11 69458614 69458614 C G CCND1 Silent p.L143L 0.31 TCGA-TS-A8AY-01 18 65180151 65180151 T A DSEL Missense_Mutation p.R575S 0.34 tolerated(0.1) benign(0.046) TCGA-TS-A8AY-01 19 53793163 53793163 G A BIRC8 Silent p.S155S 0.32 TCGA-TS-A8AY-01 19 7805792 7805792 G A CD209 3'UTR 0.37 TCGA-TS-A8AY-01 1 176175822 176175822 C A RFWD2 Missense_Mutation p.G98V 0.24 tolerated(0.16) benign(0.292) TCGA-TS-A8AY-01 1 176809378 176809378 T A PAPPA2 Missense_Mutation p.C1758S 0.30 deleterious(0) probably_damaging(0.999) TCGA-TS-A8AY-01 22 30403937 30403951 CCGCAGAAGCTTTTG - MTMR3 In_Frame_Del p.P309_L313del 0.46 TCGA-TS-A8AY-01 22 36712574 36712574 G C MYH9 Missense_Mutation p.F456L 0.45 probably_damaging(0.999) TCGA-TS-A8AY-01 22 38627273 38627273 C T TMEM184B Silent p.S142S 0.37 TCGA-TS-A8AY-01 2 179476242 179476242 C T TTN Missense_Mutation p.R16905H 0.30 TCGA-TS-A8AY-01 2 186659893 186659894 - A FSIP2 Frame_Shift_Ins p.T2769Nfs*9 0.29 TCGA-TS-A8AY-01 3 170906491 170906491 C T TNIK Silent p.K213K 0.33 TCGA-TS-A8AY-01 3 49362348 49362348 A T USP4 Missense_Mutation p.D204E 0.30 tolerated(0.09) possibly_damaging(0.737) TCGA-TS-A8AY-01 3 66456475 66456475 C T LRIG1 Intron 0.45 TCGA-TS-A8AY-01 3 8940621 8940621 T C RAD18 Missense_Mutation p.I427V 0.37 tolerated(0.39) benign(0.002) TCGA-TS-A8AY-01 5 36301431 36301431 G C RANBP3L Missense_Mutation p.Q30E 0.24 tolerated(0.18) benign(0.021) TCGA-TS-A8AY-01 8 40011080 40011080 T C C8orf4 Missense_Mutation p.V10A 0.30 tolerated_low_confidence(1) benign(0.002) TCGA-TS-A8AY-01 8 89053749 89053749 C T MMP16 Silent p.K588K 0.19 TCGA-TS-A8AY-01 X 138708903 138708903 C A MCF2 Missense_Mutation p.A211S 0.38 tolerated(0.53) benign(0.217) TCGA-UD-AABZ-01 10 104377210 104377210 C T SUFU Intron 0.27 TCGA-UD-AABZ-01 10 72357967 72357967 C A PRF1 Missense_Mutation p.G504C 0.24 deleterious(0) probably_damaging(0.999) TCGA-UD-AABZ-01 11 102465422 102465422 G T MMP20 Missense_Mutation p.F340L 0.25 deleterious(0.01) benign(0.034) TCGA-UD-AABZ-01 11 102738011 102738011 A G MMP12 RNA 0.28 TCGA-UD-AABZ-01 11 108173695 108173695 C G ATM Missense_Mutation p.A1812G 0.39 deleterious(0.04) benign(0.013) TCGA-UD-AABZ-01 11 31149108 31149108 G C DCDC1 Missense_Mutation p.Q465E 0.29 tolerated(0.19) possibly_damaging(0.771) TCGA-UD-AABZ-01 11 77594938 77594938 G T INTS4 Missense_Mutation p.P885T 0.06 tolerated(0.37) benign(0.012) TCGA-UD-AABZ-01 12 110976009 110976009 C A PPTC7 Missense_Mutation p.D266Y 0.23 deleterious(0) probably_damaging(0.996) TCGA-UD-AABZ-01 13 112723138 112723138 C A SOX1 Missense_Mutation p.T389K 0.29 deleterious(0) benign(0.377) TCGA-UD-AABZ-01 13 29600574 29600574 T C MTUS2 Missense_Mutation p.L590S 0.39 deleterious(0.04) possibly_damaging(0.656) TCGA-UD-AABZ-01 14 23861839 23861839 G T MYH6 Missense_Mutation p.Q1092K 0.12 deleterious(0) benign(0.063) TCGA-UD-AABZ-01 15 62174807 62174807 C A VPS13C Missense_Mutation p.L3204F 0.25 deleterious(0) probably_damaging(0.999) TCGA-UD-AABZ-01 15 93467737 93467737 A G CHD2 Silent p.K83K 0.38 TCGA-UD-AABZ-01 16 20996585 20996585 G T DNAH3 Missense_Mutation p.D2493E 0.13 deleterious(0.02) probably_damaging(1) TCGA-UD-AABZ-01 16 28549443 28549443 T C NUPR1 Missense_Mutation p.E67G 0.33 deleterious(0) possibly_damaging(0.607) TCGA-UD-AABZ-01 17 5342251 5342251 A T C1QBP Missense_Mutation p.V48E 0.16 tolerated(0.31) benign(0.203) TCGA-UD-AABZ-01 17 7329016 7329016 C A C17orf74 Missense_Mutation p.N3K 0.17 deleterious(0.01) possibly_damaging(0.859) TCGA-UD-AABZ-01 18 77895203 77895203 C T ADNP2 Missense_Mutation p.P636L 0.26 deleterious(0) possibly_damaging(0.504) TCGA-UD-AABZ-01 19 10692231 10692231 G A AP1M2 Missense_Mutation p.R160C 0.31 deleterious(0) possibly_damaging(0.791) TCGA-UD-AABZ-01 19 53302936 53302936 C T ZNF28 3'UTR 0.20 TCGA-UD-AABZ-01 1 100195274 100195274 C T FRRS1 Missense_Mutation p.E264K 0.49 tolerated(0.15) benign(0.177) TCGA-UD-AABZ-01 1 152193785 152193785 T C HRNR Missense_Mutation p.Q107R 0.15 possibly_damaging(0.546) TCGA-UD-AABZ-01 1 153660139 153660139 C G NPR1 Missense_Mutation p.R708G 0.17 deleterious(0.03) probably_damaging(0.992) TCGA-UD-AABZ-01 1 154897502 154897502 T C PMVK 3'UTR 0.25 TCGA-UD-AABZ-01 1 155253897 155253897 G A HCN3 Missense_Mutation p.D281N 0.07 tolerated(0.32) possibly_damaging(0.557) TCGA-UD-AABZ-01 1 201341172 201341172 G A TNNT2 Intron 0.49 TCGA-UD-AABZ-01 1 207753879 207753879 G T CR1 Missense_Mutation p.G1713C 0.50 deleterious(0.03) probably_damaging(0.992) TCGA-UD-AABZ-01 1 45672111 45672121 GCCCAGCGGTG - ZSWIM5 5'UTR 0.33 TCGA-UD-AABZ-01 22 30035202 30035202 G C NF2 Splice_Site p.X121_splice 0.10 TCGA-UD-AABZ-01 22 32302233 32302233 C G DEPDC5 Nonsense_Mutation p.S1512* 0.05 TCGA-UD-AABZ-01 2 105984177 105984177 G C FHL2 Nonsense_Mutation p.Y117* 0.21 TCGA-UD-AABZ-01 2 120567494 120567494 G A PTPN4 Missense_Mutation p.R22Q 0.21 deleterious(0.05) probably_damaging(0.978) TCGA-UD-AABZ-01 2 155157960 155157960 C T GALNT13 Silent p.C338C 0.26 TCGA-UD-AABZ-01 2 44531284 44531284 T G SLC3A1 Missense_Mutation p.F380C 0.27 deleterious(0) probably_damaging(0.946) TCGA-UD-AABZ-01 2 5833395 5833395 G T SOX11 Missense_Mutation p.G181V 0.38 tolerated(0.12) benign(0.008) TCGA-UD-AABZ-01 2 68479497 68479497 A T PPP3R1 5'UTR 0.31 TCGA-UD-AABZ-01 3 111766615 111766615 G T TMPRSS7 Nonsense_Mutation p.E128* 0.09 TCGA-UD-AABZ-01 3 48617483 48617483 G A COL7A1 Missense_Mutation p.P1702L 0.06 unknown(0) TCGA-UD-AABZ-01 3 57199376 57199376 C G IL17RD 5'UTR 0.35 TCGA-UD-AABZ-01 3 73657786 73657786 G A PDZRN3 Missense_Mutation p.S258F 0.23 deleterious(0) probably_damaging(0.974) TCGA-UD-AABZ-01 5 131972856 131972856 A G RAD50 Missense_Mutation p.I1147V 0.11 tolerated(0.27) benign(0.101) TCGA-UD-AABZ-01 5 32087813 32087813 G T PDZD2 Missense_Mutation p.R1420I 0.28 tolerated(0.16) benign(0.1) TCGA-UD-AABZ-01 5 40852852 40852852 C T CARD6 Missense_Mutation p.T473I 0.17 tolerated(0.13) benign(0.015) TCGA-UD-AABZ-01 5 83356158 83356158 G A EDIL3 Silent p.A366A 0.16 TCGA-UD-AABZ-01 6 30114857 30114857 G C TRIM40 Silent p.L150L 0.19 TCGA-UD-AABZ-01 6 32916562 32916562 C T HLA-DMA 3'UTR 0.25 TCGA-UD-AABZ-01 6 33163361 33163361 T A RXRB Silent p.G414G 0.33 TCGA-UD-AABZ-01 6 80737700 80737701 - A TTK Frame_Shift_Ins p.L499Tfs*18 0.18 TCGA-UD-AABZ-01 7 1474104 1474104 G A MICALL2 3'UTR 0.05 TCGA-UD-AABZ-01 7 44157601 44157601 C T POLD2 Missense_Mutation p.G95S 0.26 deleterious(0) probably_damaging(1) TCGA-UD-AABZ-01 7 97619359 97619359 G A OCM2 Nonsense_Mutation p.Q20* 0.17 TCGA-UD-AABZ-01 8 144946419 144946419 G A EPPK1 Nonsense_Mutation p.Q335* 0.36 TCGA-UD-AABZ-01 8 68395858 68395858 T G CPA6 Intron 0.17 TCGA-UD-AABZ-01 9 34656750 34656750 G A IL11RA Nonsense_Mutation p.W59* 0.31 TCGA-UD-AABZ-01 X 73960604 73960604 T A KIAA2022 Missense_Mutation p.Q1263L 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.466) TCGA-UD-AAC1-01 10 115991387 115991387 C T TDRD1 3'UTR 0.59 TCGA-UD-AAC1-01 10 129870478 129870478 C T PTPRE Silent p.D488D 0.66 TCGA-UD-AAC1-01 10 129871654 129871654 G A PTPRE Silent p.T506T 0.74 TCGA-UD-AAC1-01 10 13213187 13213187 C T MCM10 Silent p.P91P 0.80 TCGA-UD-AAC1-01 10 13702490 13702490 C T FRMD4A Missense_Mutation p.R575Q 0.68 deleterious_low_confidence(0.03) benign(0.435) TCGA-UD-AAC1-01 10 17891629 17891629 C T MRC1L1 Silent p.A370A 0.20 TCGA-UD-AAC1-01 10 27013022 27013022 C T PDSS1 Silent p.T267T 0.62 TCGA-UD-AAC1-01 10 75567582 75567582 G A NDST2 Missense_Mutation p.L189F 0.71 tolerated(0.1) probably_damaging(0.995) TCGA-UD-AAC1-01 10 75607017 75607017 G A CAMK2G Missense_Mutation p.T262M 0.70 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-UD-AAC1-01 11 103048395 103048395 G A DYNC2H1 Silent p.A1995A 0.73 TCGA-UD-AAC1-01 11 106810450 106810450 C T GUCY1A2 Silent p.A314A 0.11 TCGA-UD-AAC1-01 11 111179053 111179053 C T COLCA2 Missense_Mutation p.A119V 0.67 tolerated(0.51) benign(0.004) TCGA-UD-AAC1-01 11 118074266 118074266 C T AMICA1 Missense_Mutation p.G217S 0.71 deleterious(0.02) possibly_damaging(0.683) TCGA-UD-AAC1-01 11 12380034 12380034 C T MICALCL 3'UTR 0.78 TCGA-UD-AAC1-01 11 1267981 1267981 G A MUC5B Missense_Mutation p.G3291S 0.34 unknown(0) TCGA-UD-AAC1-01 11 33118497 33118497 G A CSTF3 Missense_Mutation p.R386W 0.56 deleterious(0) probably_damaging(1) TCGA-UD-AAC1-01 11 34680384 34680384 A G EHF Missense_Mutation p.Y292C 0.05 deleterious(0) probably_damaging(0.999) TCGA-UD-AAC1-01 11 45924221 45924221 G A MAPK8IP1 Silent p.P301P 0.63 TCGA-UD-AAC1-01 11 47380447 47380447 G A SPI1 Silent p.D148D 0.32 TCGA-UD-AAC1-01 11 55579103 55579103 G A OR5L1 Missense_Mutation p.R54Q 0.72 tolerated(0.5) benign(0.001) TCGA-UD-AAC1-01 11 57244088 57244088 C A RTN4RL2 Missense_Mutation p.R323S 0.75 tolerated(0.08) benign(0.012) TCGA-UD-AAC1-01 11 58478117 58478117 G T GLYAT Missense_Mutation p.P145H 0.66 deleterious(0.01) possibly_damaging(0.634) TCGA-UD-AAC1-01 11 62649529 62649529 A - SLC3A2 Frame_Shift_Del p.K301Rfs*31 0.62 TCGA-UD-AAC1-01 11 65810611 65810611 G A GAL3ST3 Silent p.A221A 0.67 TCGA-UD-AAC1-01 11 65810717 65810717 G A GAL3ST3 Missense_Mutation p.A186V 0.67 deleterious(0.02) benign(0.309) TCGA-UD-AAC1-01 11 66043650 66043650 C T RAB1B Missense_Mutation p.R183W 0.65 deleterious_low_confidence(0) benign(0) TCGA-UD-AAC1-01 11 6651382 6651382 G A DCHS1 Missense_Mutation p.S1548L 0.74 deleterious(0) possibly_damaging(0.497) TCGA-UD-AAC1-01 11 6653011 6653011 G A DCHS1 Missense_Mutation p.R1171C 0.65 deleterious(0.03) probably_damaging(1) TCGA-UD-AAC1-01 11 6661869 6661869 G A DCHS1 Missense_Mutation p.R326W 0.67 deleterious(0.01) probably_damaging(0.994) TCGA-UD-AAC1-01 11 67174303 67174303 T C TBC1D10C Silent p.A218A 0.70 TCGA-UD-AAC1-01 11 71940240 71940240 C T INPPL1 Missense_Mutation p.R209C 0.64 deleterious(0.04) benign(0.013) TCGA-UD-AAC1-01 11 72416897 72416897 G A ARAP1 Missense_Mutation p.R588W 0.69 deleterious(0) probably_damaging(0.999) TCGA-UD-AAC1-01 11 73988140 73988140 G A P4HA3 Missense_Mutation p.R409C 0.66 deleterious(0) probably_damaging(0.997) TCGA-UD-AAC1-01 11 799855 799855 C - PIDD Frame_Shift_Del p.V812Cfs*132 0.72 TCGA-UD-AAC1-01 11 88330390 88330390 A G GRM5 Missense_Mutation p.S509P 0.16 deleterious(0) probably_damaging(0.999) TCGA-UD-AAC1-01 11 9225409 9225409 G A DENND5A Silent p.Y249Y 0.66 TCGA-UD-AAC1-01 12 104157386 104157386 G A STAB2 Silent p.T2535T 0.68 TCGA-UD-AAC1-01 12 110813977 110813977 C T ANAPC7 Missense_Mutation p.A502T 0.68 tolerated(0.45) benign(0.002) TCGA-UD-AAC1-01 12 120128052 120128052 C T CIT Silent p.T2030T 0.70 TCGA-UD-AAC1-01 12 122620139 122620139 C T MLXIP Missense_Mutation p.A653V 0.07 tolerated(0.96) benign(0.001) TCGA-UD-AAC1-01 12 13232733 13232733 C T KIAA1467 Silent p.N551N 0.54 TCGA-UD-AAC1-01 12 40704433 40704433 C T LRRK2 Silent p.N1506N 0.69 TCGA-UD-AAC1-01 12 46245317 46245318 - G ARID2 Frame_Shift_Ins p.V1140Sfs*20 0.16 TCGA-UD-AAC1-01 12 50035654 50035654 C T FMNL3 3'UTR 0.68 TCGA-UD-AAC1-01 12 52448464 52448464 G A NR4A1 Missense_Mutation p.G131S 0.69 tolerated(0.88) benign(0.045) TCGA-UD-AAC1-01 12 56397748 56397748 G A SUOX Missense_Mutation p.R192Q 0.68 tolerated(0.12) benign(0.007) TCGA-UD-AAC1-01 12 57345813 57345813 T G RDH16 Nonstop_Mutation p.*318Cext*2 0.21 TCGA-UD-AAC1-01 12 6495306 6495306 G A LTBR Missense_Mutation p.A183T 0.23 tolerated(0.28) probably_damaging(0.972) TCGA-UD-AAC1-01 12 6554268 6554268 C T CD27 Missense_Mutation p.R3W 0.49 tolerated(0.97) benign(0.001) TCGA-UD-AAC1-01 12 7457055 7457055 G A ACSM4 Missense_Mutation p.R43H 0.75 tolerated(0.13) benign(0.015) TCGA-UD-AAC1-01 12 83444707 83444707 G A TMTC2 Missense_Mutation p.R726H 0.11 deleterious(0) probably_damaging(0.991) TCGA-UD-AAC1-01 12 85466745 85466745 G A LRRIQ1 Missense_Mutation p.G919D 0.68 tolerated(0.63) benign(0.052) TCGA-UD-AAC1-01 13 101717868 101717868 G A NALCN Missense_Mutation p.R1498C 0.66 deleterious(0) probably_damaging(0.962) TCGA-UD-AAC1-01 13 113732740 113732740 G A MCF2L Missense_Mutation p.R575Q 0.64 tolerated(0.27) benign(0.147) TCGA-UD-AAC1-01 13 21555629 21555629 C T LATS2 Missense_Mutation p.A881T 0.60 deleterious(0) probably_damaging(1) TCGA-UD-AAC1-01 13 21563167 21563167 G A LATS2 Missense_Mutation p.A251V 0.34 tolerated_low_confidence(0.22) benign(0.022) TCGA-UD-AAC1-01 13 27255386 27255387 - C WASF3 Frame_Shift_Ins p.P308Afs*29 0.38 TCGA-UD-AAC1-01 13 32869474 32869474 C T FRY Silent p.T2973T 0.68 TCGA-UD-AAC1-01 13 37678795 37678795 C T CSNK1A1L Missense_Mutation p.R200H 0.73 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-UD-AAC1-01 13 46161310 46161310 G A FAM194B Silent p.F248F 0.64 TCGA-UD-AAC1-01 14 100610278 100610278 G A EVL 3'UTR 0.74 TCGA-UD-AAC1-01 14 102689302 102689302 C T WDR20 3'UTR 0.88 TCGA-UD-AAC1-01 14 104143798 104143798 C T KLC1 Missense_Mutation p.R476C 0.66 deleterious(0) probably_damaging(0.964) TCGA-UD-AAC1-01 14 104152028 104152028 C T KLC1 Intron 0.73 TCGA-UD-AAC1-01 14 104208374 104208374 C T PPP1R13B Silent p.P525P 0.05 TCGA-UD-AAC1-01 14 24901671 24901671 C T KHNYN Nonsense_Mutation p.R402* 0.31 TCGA-UD-AAC1-01 14 36190909 36190909 G A RALGAPA1 Missense_Mutation p.R751W 0.67 deleterious(0) probably_damaging(0.999) TCGA-UD-AAC1-01 14 53327176 53327176 G A FERMT2 Missense_Mutation p.A544V 0.06 tolerated(0.34) benign(0.112) TCGA-UD-AAC1-01 14 89016830 89016830 C T PTPN21 5'UTR 0.59 TCGA-UD-AAC1-01 15 22332412 22332413 - A RP11-69H14.6 RNA 0.27 TCGA-UD-AAC1-01 15 22383127 22383127 G A OR4N4 Missense_Mutation p.A219T 0.76 tolerated(1) benign(0.026) TCGA-UD-AAC1-01 15 30064358 30064358 C T TJP1 Missense_Mutation p.R74Q 0.75 tolerated(0.08) possibly_damaging(0.901) TCGA-UD-AAC1-01 15 31334336 31334336 G A TRPM1 Silent p.H652H 0.74 TCGA-UD-AAC1-01 15 38805033 38805033 G A RASGRP1 Missense_Mutation p.T267M 0.73 deleterious(0) probably_damaging(0.996) TCGA-UD-AAC1-01 15 42145459 42145459 C T SPTBN5 Silent p.A3389A 0.68 TCGA-UD-AAC1-01 15 44092122 44092122 G A SERINC4 Silent p.S21S 0.68 TCGA-UD-AAC1-01 15 48559841 48559841 T - SLC12A1 Frame_Shift_Del p.Y748Mfs*22 0.12 TCGA-UD-AAC1-01 15 50264841 50264841 G A ATP8B4 Missense_Mutation p.T394M 0.05 deleterious(0) probably_damaging(1) TCGA-UD-AAC1-01 15 50789366 50789366 G T USP8 Silent p.R992R 0.43 TCGA-UD-AAC1-01 15 64792056 64792056 G A ZNF609 Silent p.A146A 0.66 TCGA-UD-AAC1-01 15 65350938 65350938 G A RASL12 Silent p.C84C 0.08 TCGA-UD-AAC1-01 15 83926518 83926518 C T BNC1 Missense_Mutation p.M887I 0.67 tolerated(0.32) benign(0.003) TCGA-UD-AAC1-01 15 85402596 85402596 C T ALPK3 Missense_Mutation p.R1516C 0.66 tolerated(0.07) benign(0.002) TCGA-UD-AAC1-01 15 93545444 93545446 AGA - CHD2 In_Frame_Del p.K1395del 0.56 TCGA-UD-AAC1-01 15 93588258 93588258 C T RGMA Silent p.P449P 0.26 TCGA-UD-AAC1-01 16 12497377 12497377 C T SNX29 Silent p.H676H 0.59 TCGA-UD-AAC1-01 16 1574817 1574817 G A IFT140 Missense_Mutation p.R989C 0.67 deleterious(0) probably_damaging(1) TCGA-UD-AAC1-01 16 20926885 20926885 C T LYRM1 Missense_Mutation p.T3M 0.81 tolerated(0.13) benign(0.002) TCGA-UD-AAC1-01 16 27514202 27514202 G A GTF3C1 Missense_Mutation p.R629C 0.12 deleterious(0) probably_damaging(0.997) TCGA-UD-AAC1-01 16 29675882 29675882 G A SPN Missense_Mutation p.R278H 0.69 tolerated(0.08) probably_damaging(0.923) TCGA-UD-AAC1-01 16 30018132 30018132 G A DOC2A Silent p.N284N 0.67 TCGA-UD-AAC1-01 16 30018385 30018385 C T DOC2A Silent p.A227A 0.66 TCGA-UD-AAC1-01 16 3021931 3021931 C T PAQR4 Silent p.H268H 0.77 TCGA-UD-AAC1-01 16 3640852 3640852 C T SLX4 Silent p.P929P 0.64 TCGA-UD-AAC1-01 16 51174132 51174132 G A SALL1 Silent p.S667S 0.59 TCGA-UD-AAC1-01 16 55854337 55854337 C T CES1 Missense_Mutation p.V250M 0.31 deleterious(0) probably_damaging(0.982) TCGA-UD-AAC1-01 16 56473649 56473649 G A NUDT21 Missense_Mutation p.R131C 0.57 tolerated(0.05) benign(0.147) TCGA-UD-AAC1-01 16 58544553 58544553 G A NDRG4 Intron 0.77 TCGA-UD-AAC1-01 16 67696104 67696104 C T PARD6A Missense_Mutation p.R199C 0.67 deleterious(0.01) probably_damaging(0.935) TCGA-UD-AAC1-01 16 68026864 68026864 C T DPEP2 Silent p.P84P 0.64 TCGA-UD-AAC1-01 16 69334785 69334785 G A SNTB2 Silent p.T527T 0.67 TCGA-UD-AAC1-01 16 69965762 69965762 G A WWP2 Missense_Mutation p.E551K 0.69 deleterious(0) probably_damaging(0.96) TCGA-UD-AAC1-01 16 71101154 71101154 G A HYDIN Intron 0.55 TCGA-UD-AAC1-01 16 71683357 71683359 AGC - PHLPP2 In_Frame_Del p.A1136del 0.59 TCGA-UD-AAC1-01 16 74985406 74985406 G A WDR59 Silent p.D92D 0.71 TCGA-UD-AAC1-01 16 85143966 85143966 G A FAM92B Missense_Mutation p.R41W 0.68 deleterious(0.01) probably_damaging(0.998) TCGA-UD-AAC1-01 16 89971442 89971442 C T TCF25 Silent p.N522N 0.70 TCGA-UD-AAC1-01 17 10419534 10419534 G A MYH1 Silent p.Y110Y 0.73 TCGA-UD-AAC1-01 17 1703452 1703452 G A SMYD4 Silent p.C412C 0.26 TCGA-UD-AAC1-01 17 20135606 20135606 C T SPECC1 Missense_Mutation p.R747C 0.72 tolerated(0.1) probably_damaging(0.996) TCGA-UD-AAC1-01 17 3533560 3533560 G A SHPK Silent p.S83S 0.65 TCGA-UD-AAC1-01 17 39740610 39740610 G A KRT14 Missense_Mutation p.R222C 0.80 deleterious(0.05) possibly_damaging(0.479) TCGA-UD-AAC1-01 17 71410882 71410882 C T SDK2 Silent p.P795P 0.81 TCGA-UD-AAC1-01 17 73915809 73915809 C T FBF1 Missense_Mutation p.R678H 0.60 tolerated(0.09) possibly_damaging(0.583) TCGA-UD-AAC1-01 17 75494681 75494681 G A SEPT9 Missense_Mutation p.G568S 0.67 tolerated(0.99) benign(0.007) TCGA-UD-AAC1-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.61 deleterious(0) probably_damaging(1) TCGA-UD-AAC1-01 17 78184400 78184400 C T SGSH Missense_Mutation p.D454N 0.31 tolerated(0.13) benign(0.021) TCGA-UD-AAC1-01 17 78938074 78938074 G A RPTOR Missense_Mutation p.V1318M 0.05 deleterious(0.03) probably_damaging(0.968) TCGA-UD-AAC1-01 17 79428119 79428119 G A RP11-1055B8.7 Missense_Mutation p.V2144M 0.22 benign(0.021) TCGA-UD-AAC1-01 17 7948224 7948224 C T ALOX15B Missense_Mutation p.R252C 0.65 tolerated(0.06) benign(0.077) TCGA-UD-AAC1-01 18 31263465 31263465 C T ASXL3 Missense_Mutation p.T271M 0.72 probably_damaging(1) TCGA-UD-AAC1-01 18 44190815 44190815 G A LOXHD1 Missense_Mutation p.P228L 0.78 tolerated(0.56) probably_damaging(0.96) TCGA-UD-AAC1-01 18 60241838 60241838 G A ZCCHC2 Missense_Mutation p.A842T 0.67 deleterious(0.04) benign(0.013) TCGA-UD-AAC1-01 18 77464914 77464914 G A CTDP1 Missense_Mutation p.A257T 0.69 deleterious(0.02) probably_damaging(1) TCGA-UD-AAC1-01 18 8831684 8831684 C T SOGA2 3'UTR 0.05 TCGA-UD-AAC1-01 19 10577662 10577662 C T PDE4A Missense_Mutation p.R676W 0.64 deleterious(0) probably_damaging(1) TCGA-UD-AAC1-01 19 11143993 11143993 C T SMARCA4 Missense_Mutation p.R1192C 0.70 probably_damaging(1) TCGA-UD-AAC1-01 19 11447922 11447922 C T RAB3D Missense_Mutation p.V52I 0.73 tolerated(1) benign(0.371) TCGA-UD-AAC1-01 19 12875646 12875646 G A HOOK2 Silent p.Y603Y 0.77 TCGA-UD-AAC1-01 19 14557241 14557241 C T PKN1 Missense_Mutation p.R166W 0.69 deleterious(0.01) probably_damaging(0.997) TCGA-UD-AAC1-01 19 15083610 15083610 C T SLC1A6 Missense_Mutation p.R38H 0.66 deleterious(0.03) probably_damaging(0.98) TCGA-UD-AAC1-01 19 15272217 15272217 C T NOTCH3 Silent p.P2074P 0.73 TCGA-UD-AAC1-01 19 15539052 15539052 G - WIZ Intron 0.60 TCGA-UD-AAC1-01 19 16631550 16631550 C T C19orf44 3'UTR 0.86 TCGA-UD-AAC1-01 19 17892604 17892604 G A FCHO1 Missense_Mutation p.A638T 0.66 deleterious(0) probably_damaging(0.999) TCGA-UD-AAC1-01 19 18649180 18649180 G A FKBP8 Silent p.D206D 0.76 TCGA-UD-AAC1-01 19 19162763 19162763 C T ARMC6 Silent p.H204H 0.67 TCGA-UD-AAC1-01 19 19468315 19468315 C T MAU2 3'UTR 0.64 TCGA-UD-AAC1-01 19 34791653 34791653 G A KIAA0355 Missense_Mutation p.R92H 0.68 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-UD-AAC1-01 19 3586501 3586501 C A GIPC3 Missense_Mutation p.F78L 0.70 deleterious(0) probably_damaging(0.978) TCGA-UD-AAC1-01 19 3624012 3624012 C T CACTIN Missense_Mutation p.A106T 0.66 tolerated_low_confidence(0.68) unknown(0) TCGA-UD-AAC1-01 19 36399186 36399186 G A TYROBP 5'UTR 0.66 TCGA-UD-AAC1-01 19 36595834 36595834 G A WDR62 Silent p.T1492T 0.67 TCGA-UD-AAC1-01 19 40331337 40331337 C T FBL Missense_Mutation p.R34Q 0.75 tolerated_low_confidence(0.34) benign(0.037) TCGA-UD-AAC1-01 19 40408753 40408753 G A FCGBP Silent p.F1362F 0.53 TCGA-UD-AAC1-01 19 40430371 40430371 G A FCGBP Silent p.R524R 0.26 TCGA-UD-AAC1-01 19 41744408 41744408 C T AXL Missense_Mutation p.T343M 0.77 tolerated(0.31) benign(0.017) TCGA-UD-AAC1-01 19 4174556 4174556 C T SIRT6 3'UTR 0.71 TCGA-UD-AAC1-01 19 42383337 42383337 C T CD79A Silent p.C119C 0.20 TCGA-UD-AAC1-01 19 42798837 42798837 G A CIC Missense_Mutation p.R1470H 0.05 probably_damaging(0.964) TCGA-UD-AAC1-01 19 42838298 42838298 G - MEGF8 Frame_Shift_Del p.G166Vfs*53 0.46 TCGA-UD-AAC1-01 19 44118190 44118190 C T SRRM5 Silent p.S639S 0.72 TCGA-UD-AAC1-01 19 44303052 44303052 C T LYPD5 Silent p.P94P 0.71 TCGA-UD-AAC1-01 19 47570534 47570534 G - ZC3H4 Frame_Shift_Del p.V998Cfs*146 0.44 TCGA-UD-AAC1-01 19 47969480 47969480 C T SLC8A2 Missense_Mutation p.D61N 0.28 tolerated(0.36) benign(0.003) TCGA-UD-AAC1-01 19 48041443 48041443 G A ZNF541 Missense_Mutation p.T1036M 0.78 deleterious(0.04) benign(0.007) TCGA-UD-AAC1-01 19 48184200 48184200 C T GLTSCR1 Silent p.S591S 0.65 TCGA-UD-AAC1-01 19 56223313 56223313 C T NLRP9 Missense_Mutation p.R899H 0.72 tolerated(0.2) benign(0.001) TCGA-UD-AAC1-01 19 5778532 5778532 C T CATSPERD Missense_Mutation p.R748C 0.72 tolerated(0.22) benign(0.002) TCGA-UD-AAC1-01 19 58549531 58549531 C T ZSCAN1 Silent p.A109A 0.70 TCGA-UD-AAC1-01 19 6387497 6387497 C T GTF2F1 Missense_Mutation p.A134T 0.04 tolerated(0.42) benign(0.285) TCGA-UD-AAC1-01 19 6468352 6468352 C T DENND1C Missense_Mutation p.E562K 0.69 deleterious(0) probably_damaging(0.998) TCGA-UD-AAC1-01 19 7584739 7584739 C T ZNF358 Missense_Mutation p.A204V 0.72 deleterious(0.01) probably_damaging(0.918) TCGA-UD-AAC1-01 19 8188759 8188759 C T FBN3 Silent p.P955P 0.57 TCGA-UD-AAC1-01 1 10715850 10715850 G A CASZ1 Silent p.D507D 0.66 TCGA-UD-AAC1-01 1 113197172 113197172 G A CAPZA1 Missense_Mutation p.R102Q 0.75 tolerated(0.07) benign(0.22) TCGA-UD-AAC1-01 1 114440527 114440527 G A AP4B1 Missense_Mutation p.P413S 0.69 deleterious(0.01) probably_damaging(0.988) TCGA-UD-AAC1-01 1 1190559 1190559 G A UBE2J2 3'UTR 0.66 TCGA-UD-AAC1-01 1 12557581 12557581 G A VPS13D Silent p.P4230P 0.67 TCGA-UD-AAC1-01 1 12628236 12628236 G A DHRS3 3'UTR 0.72 TCGA-UD-AAC1-01 1 1322888 1322888 G A CCNL2 Missense_Mutation p.P429L 0.66 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-UD-AAC1-01 1 150531849 150531849 G A ADAMTSL4 Silent p.P950P 0.64 TCGA-UD-AAC1-01 1 150923355 150923355 C T SETDB1 Nonsense_Mutation p.R668* 0.64 TCGA-UD-AAC1-01 1 156213992 156213992 A G PAQR6 Missense_Mutation p.F239S 0.67 deleterious_low_confidence(0) unknown(0) TCGA-UD-AAC1-01 1 160261672 160261672 G A COPA Silent p.S1074S 0.70 TCGA-UD-AAC1-01 1 16378220 16378220 G A CLCNKB Missense_Mutation p.R438H 0.65 deleterious(0) probably_damaging(1) TCGA-UD-AAC1-01 1 17312606 17312606 C T ATP13A2 3'UTR 0.64 TCGA-UD-AAC1-01 1 175299324 175299324 G A TNR Missense_Mutation p.R1227C 0.26 deleterious(0) probably_damaging(0.996) TCGA-UD-AAC1-01 1 180904933 180904933 A G KIAA1614 Missense_Mutation p.T630A 0.06 tolerated(0.22) benign(0.038) TCGA-UD-AAC1-01 1 183194828 183194828 C T LAMC2 Missense_Mutation p.R347C 0.22 deleterious(0.01) possibly_damaging(0.766) TCGA-UD-AAC1-01 1 183525291 183525291 C T NCF2 Missense_Mutation p.A515T 0.75 tolerated(0.48) benign(0.003) TCGA-UD-AAC1-01 1 186352194 186352194 C T C1orf27 Missense_Mutation p.T47M 0.08 deleterious(0) probably_damaging(0.995) TCGA-UD-AAC1-01 1 203740020 203740020 G A LAX1 Missense_Mutation p.V52I 0.64 tolerated(1) benign(0.003) TCGA-UD-AAC1-01 1 205238706 205238706 G A TMCC2 Missense_Mutation p.R459Q 0.72 deleterious(0.03) possibly_damaging(0.906) TCGA-UD-AAC1-01 1 205813220 205813220 G A PM20D1 Silent p.I234I 0.52 TCGA-UD-AAC1-01 1 206647747 206647747 G T IKBKE Missense_Mutation p.R54M 0.66 deleterious(0) probably_damaging(1) TCGA-UD-AAC1-01 1 214171536 214171536 C T PROX1 Missense_Mutation p.S553L 0.70 tolerated(0.06) probably_damaging(0.985) TCGA-UD-AAC1-01 1 214820025 214820026 - A CENPF Frame_Shift_Ins p.I2373Nfs*28 0.39 TCGA-UD-AAC1-01 1 217622633 217622633 G A GPATCH2 Missense_Mutation p.R442W 0.76 deleterious(0) probably_damaging(0.997) TCGA-UD-AAC1-01 1 223567724 223567724 C T C1orf65 Missense_Mutation p.R303W 0.70 tolerated(0.12) possibly_damaging(0.736) TCGA-UD-AAC1-01 1 224491489 224491489 C T NVL Missense_Mutation p.R299H 0.65 deleterious(0) possibly_damaging(0.613) TCGA-UD-AAC1-01 1 230372417 230372417 G A GALNT2 Missense_Mutation p.A185T 0.32 tolerated(0.52) benign(0.01) TCGA-UD-AAC1-01 1 237755152 237755152 C T RYR2 Missense_Mutation p.T1425M 0.34 possibly_damaging(0.685) TCGA-UD-AAC1-01 1 248845141 248845141 G A OR14I1 Silent p.A155A 0.67 TCGA-UD-AAC1-01 1 26109179 26109179 C T MAN1C1 Missense_Mutation p.A585V 0.73 deleterious(0) probably_damaging(0.998) TCGA-UD-AAC1-01 1 26357995 26357995 C - EXTL1 Frame_Shift_Del p.P428Qfs*6 0.39 TCGA-UD-AAC1-01 1 27428548 27428548 G A SLC9A1 Missense_Mutation p.R632C 0.64 deleterious(0) probably_damaging(0.988) TCGA-UD-AAC1-01 1 28293048 28293048 G A XKR8 Silent p.S175S 0.71 TCGA-UD-AAC1-01 1 36563987 36563987 G A COL8A2 Missense_Mutation p.T432M 0.67 tolerated(0.12) unknown(0) TCGA-UD-AAC1-01 1 36787774 36787774 C T EVA1B 3'UTR 0.67 TCGA-UD-AAC1-01 1 42880447 42880447 G A RIMKLA Silent p.P326P 0.71 TCGA-UD-AAC1-01 1 43770640 43770640 G A TIE1 Silent p.P59P 0.78 TCGA-UD-AAC1-01 1 44482800 44482800 G A SLC6A9 Silent p.S2S 0.66 TCGA-UD-AAC1-01 1 45923327 45923327 C T TESK2 Missense_Mutation p.R44Q 0.85 tolerated(0.27) benign(0.087) TCGA-UD-AAC1-01 1 51439638 51439638 G A CDKN2C Missense_Mutation p.R68Q 0.72 tolerated(0.61) benign(0.001) TCGA-UD-AAC1-01 1 85279808 85279808 G A LPAR3 Silent p.L261L 0.75 TCGA-UD-AAC1-01 1 9165578 9165578 C T GPR157 Silent p.P253P 0.75 TCGA-UD-AAC1-01 20 31390242 31390242 C T DNMT3B Nonsense_Mutation p.R733* 0.74 TCGA-UD-AAC1-01 20 3354709 3354710 - A C20orf194 Frame_Shift_Ins p.T200Yfs*5 0.43 TCGA-UD-AAC1-01 20 3759184 3759184 G A SPEF1 Missense_Mutation p.R163W 0.68 deleterious(0.04) benign(0.28) TCGA-UD-AAC1-01 20 49209631 49209631 T A FAM65C Missense_Mutation p.Y768F 0.63 deleterious(0) probably_damaging(1) TCGA-UD-AAC1-01 20 50769000 50769000 C T ZFP64 Silent p.T577T 0.60 TCGA-UD-AAC1-01 20 57429613 57429613 C T GNAS Silent p.S431S 0.07 TCGA-UD-AAC1-01 20 57484633 57484633 C T GNAS Silent p.N882N 0.67 TCGA-UD-AAC1-01 20 61511215 61511215 G A DIDO1 Silent p.S2031S 0.73 TCGA-UD-AAC1-01 20 62045496 62045496 C T KCNQ2 Missense_Mutation p.E526K 0.63 deleterious(0) probably_damaging(0.982) TCGA-UD-AAC1-01 20 62327179 62327179 G A RTEL1 3'UTR 0.76 TCGA-UD-AAC1-01 21 17177464 17177464 C T USP25 Missense_Mutation p.R223C 0.72 deleterious(0.04) benign(0.001) TCGA-UD-AAC1-01 21 27102058 27102058 G A ATP5J Silent p.A24A 0.80 TCGA-UD-AAC1-01 21 43852251 43852251 G A UBASH3A Missense_Mutation p.G404R 0.73 deleterious(0) probably_damaging(1) TCGA-UD-AAC1-01 21 44589278 44589278 C T CRYAA Silent p.F23F 0.75 TCGA-UD-AAC1-01 21 45194206 45194206 G A CSTB Silent p.H58H 0.72 TCGA-UD-AAC1-01 21 45223560 45223560 C T RRP1 Missense_Mutation p.R431C 0.89 tolerated_low_confidence(0.07) benign(0.025) TCGA-UD-AAC1-01 21 46306231 46306231 G A ITGB2 3'UTR 0.82 TCGA-UD-AAC1-01 21 47978253 47978253 C T DIP2A Missense_Mutation p.R1306C 0.09 deleterious(0) possibly_damaging(0.684) TCGA-UD-AAC1-01 22 18650711 18650711 G A USP18 Missense_Mutation p.V179I 0.72 tolerated(0.14) benign(0.025) TCGA-UD-AAC1-01 22 23492257 23492257 C T RAB36 Missense_Mutation p.T92M 0.65 deleterious(0.05) benign(0.185) TCGA-UD-AAC1-01 22 31495848 31495848 C T SMTN Missense_Mutation p.R857C 0.72 deleterious(0) probably_damaging(0.999) TCGA-UD-AAC1-01 22 32017637 32017637 C T PISD Missense_Mutation p.V152M 0.71 tolerated(0.19) benign(0.024) TCGA-UD-AAC1-01 22 37975964 37975964 G T LGALS2 5'UTR 0.67 TCGA-UD-AAC1-01 22 40802555 40802555 C T SGSM3 Silent p.A358A 0.69 TCGA-UD-AAC1-01 22 41922431 41922431 G A ACO2 Missense_Mutation p.V643I 0.82 tolerated_low_confidence(0.08) benign(0.008) TCGA-UD-AAC1-01 22 46345961 46345961 G A WNT7B Missense_Mutation p.P46L 0.05 deleterious(0.01) probably_damaging(0.998) TCGA-UD-AAC1-01 22 50644857 50644857 C T SELO Silent p.S222S 0.68 TCGA-UD-AAC1-01 22 50903468 50903468 G A SBF1 Missense_Mutation p.R432C 0.76 deleterious(0) probably_damaging(0.984) TCGA-UD-AAC1-01 2 11052975 11052975 C T KCNF1 Silent p.I141I 0.04 TCGA-UD-AAC1-01 2 113251919 113251919 G A TTL Missense_Mutation p.V146I 0.70 tolerated(0.25) benign(0.05) TCGA-UD-AAC1-01 2 119699762 119699762 C T MARCO 5'UTR 0.91 TCGA-UD-AAC1-01 2 121554980 121554980 G A GLI2 Silent p.P28P 0.71 TCGA-UD-AAC1-01 2 141598619 141598619 C T LRP1B Missense_Mutation p.R1661H 0.69 possibly_damaging(0.522) TCGA-UD-AAC1-01 2 149853828 149853828 C T KIF5C Missense_Mutation p.R692W 0.70 deleterious(0.02) possibly_damaging(0.676) TCGA-UD-AAC1-01 2 158637053 158637053 C T ACVR1 Missense_Mutation p.G43S 0.71 tolerated(0.69) benign(0.196) TCGA-UD-AAC1-01 2 159518055 159518055 C T PKP4 Intron 0.31 TCGA-UD-AAC1-01 2 160284893 160284893 G A BAZ2B Missense_Mutation p.R765C 0.08 probably_damaging(0.999) TCGA-UD-AAC1-01 2 180835381 180835381 A T CWC22 Silent p.V381V 0.11 TCGA-UD-AAC1-01 2 233899686 233899686 C T NEU2 Silent p.Y354Y 0.73 TCGA-UD-AAC1-01 2 242122273 242122273 G A PPP1R7 3'UTR 0.71 TCGA-UD-AAC1-01 2 25497891 25497891 C T DNMT3A Silent p.P186P 0.09 TCGA-UD-AAC1-01 2 27353146 27353146 C T ABHD1 Missense_Mutation p.R290C 0.74 deleterious(0.03) benign(0.284) TCGA-UD-AAC1-01 2 43459889 43459890 CT - THADA Frame_Shift_Del p.S1810* 0.48 TCGA-UD-AAC1-01 2 47637509 47637509 C T MSH2 Nonsense_Mutation p.Q215* 0.79 TCGA-UD-AAC1-01 2 61014107 61014107 C T PAPOLG Missense_Mutation p.R398C 0.76 deleterious(0.01) probably_damaging(0.991) TCGA-UD-AAC1-01 2 70122228 70122228 C T SNRNP27 Missense_Mutation p.R13C 0.86 deleterious_low_confidence(0) unknown(0) TCGA-UD-AAC1-01 2 71576230 71576230 G A ZNF638 Missense_Mutation p.R49H 0.59 tolerated(0.3) benign(0.01) TCGA-UD-AAC1-01 2 84774640 84774640 C T DNAH6 Nonsense_Mutation p.R364* 0.57 TCGA-UD-AAC1-01 2 85604495 85604495 C T ELMOD3 Silent p.G212G 0.70 TCGA-UD-AAC1-01 2 95847179 95847179 C T ZNF2 Silent p.Y202Y 0.73 TCGA-UD-AAC1-01 3 113528257 113528257 C T ATP6V1A Missense_Mutation p.R613C 0.68 deleterious(0) possibly_damaging(0.903) TCGA-UD-AAC1-01 3 114070599 114070599 C T ZBTB20 Missense_Mutation p.R109H 0.06 deleterious(0.04) probably_damaging(0.991) TCGA-UD-AAC1-01 3 121980874 121980874 G A CASR Missense_Mutation p.R331Q 0.67 tolerated(0.12) possibly_damaging(0.805) TCGA-UD-AAC1-01 3 130110303 130110303 G A COL6A5 Missense_Mutation p.A900T 0.78 tolerated(0.11) benign(0.021) TCGA-UD-AAC1-01 3 139090575 139090575 C T COPB2 Missense_Mutation p.D399N 0.06 tolerated(0.18) possibly_damaging(0.668) TCGA-UD-AAC1-01 3 142499740 142499740 C T TRPC1 Missense_Mutation p.R277W 0.65 deleterious(0) probably_damaging(0.997) TCGA-UD-AAC1-01 3 1427411 1427411 C T CNTN6 Silent p.S878S 0.77 TCGA-UD-AAC1-01 3 195610058 195610058 G A TNK2 Silent p.Y256Y 0.68 TCGA-UD-AAC1-01 3 38951598 38951598 G A SCN11A Missense_Mutation p.R354W 0.67 deleterious(0) probably_damaging(1) TCGA-UD-AAC1-01 3 49570010 49570010 G A DAG1 Missense_Mutation p.R689Q 0.67 tolerated(0.14) possibly_damaging(0.616) TCGA-UD-AAC1-01 3 49720288 49720288 G T APEH Missense_Mutation p.E632D 0.09 tolerated(0.07) probably_damaging(0.911) TCGA-UD-AAC1-01 3 58406295 58406295 G A PXK Intron 0.39 TCGA-UD-AAC1-01 3 88190002 88190002 T C ZNF654 Silent p.L514L 0.70 TCGA-UD-AAC1-01 4 110437688 110437688 G A SEC24B Missense_Mutation p.R673H 0.88 deleterious(0) probably_damaging(0.996) TCGA-UD-AAC1-01 4 126241793 126241793 C T FAT4 Silent p.H1409H 0.69 TCGA-UD-AAC1-01 4 144461562 144461562 G A SMARCA5 Missense_Mutation p.R606H 0.55 deleterious(0) probably_damaging(0.997) TCGA-UD-AAC1-01 4 155486975 155486975 C T FGB Missense_Mutation p.R44C 0.67 deleterious_low_confidence(0) probably_damaging(1) TCGA-UD-AAC1-01 4 156632086 156632086 G A GUCY1A3 Missense_Mutation p.V257I 0.73 tolerated(0.41) benign(0.004) TCGA-UD-AAC1-01 4 159782863 159782863 G A FNIP2 Missense_Mutation p.R467H 0.69 tolerated(1) benign(0.018) TCGA-UD-AAC1-01 4 1804697 1804697 G A FGFR3 Silent p.S329S 0.71 TCGA-UD-AAC1-01 4 189022320 189022320 G A TRIML2 Missense_Mutation p.L74F 0.15 tolerated(1) benign(0.002) TCGA-UD-AAC1-01 4 2939958 2939958 A - NOP14 3'UTR 0.45 TCGA-UD-AAC1-01 4 3117968 3117970 CTT - HTT In_Frame_Del p.S350del 0.63 TCGA-UD-AAC1-01 4 41600942 41600944 TAT - LIMCH1 In_Frame_Del p.I83del 0.70 TCGA-UD-AAC1-01 4 47605454 47605454 C T CORIN Silent p.T924T 0.63 TCGA-UD-AAC1-01 4 88106851 88106851 G A KLHL8 Missense_Mutation p.T106M 0.69 tolerated(0.1) benign(0.354) TCGA-UD-AAC1-01 4 89036137 89036137 C T ABCG2 Silent p.V305V 0.62 TCGA-UD-AAC1-01 5 100222244 100222244 A - ST8SIA4 Frame_Shift_Del p.F102Lfs*17 0.34 TCGA-UD-AAC1-01 5 121412698 121412698 T A LOX Splice_Site p.X211_splice 0.42 TCGA-UD-AAC1-01 5 127611827 127611827 C T FBN2 Silent p.P2499P 0.38 TCGA-UD-AAC1-01 5 132161808 132161808 C T SHROOM1 Missense_Mutation p.D9N 0.18 tolerated(0.17) benign(0) TCGA-UD-AAC1-01 5 137682604 137682604 C T FAM53C Missense_Mutation p.R379W 0.43 deleterious(0.02) benign(0.001) TCGA-UD-AAC1-01 5 139201549 139201549 G T PSD2 Missense_Mutation p.R390L 0.43 deleterious(0) benign(0.399) TCGA-UD-AAC1-01 5 139251394 139251394 C T NRG2 Missense_Mutation p.A342T 0.16 tolerated(0.13) benign(0.362) TCGA-UD-AAC1-01 5 140554521 140554521 C T PCDHB7 Missense_Mutation p.S702L 0.26 deleterious_low_confidence(0) benign(0.393) TCGA-UD-AAC1-01 5 140731367 140731367 C T PCDHGB1 Missense_Mutation p.R514C 0.48 deleterious(0.04) probably_damaging(0.996) TCGA-UD-AAC1-01 5 141019543 141019543 C - RELL2 Frame_Shift_Del p.T189Qfs*44 0.24 TCGA-UD-AAC1-01 5 142500585 142500585 C T ARHGAP26 Missense_Mutation p.T524M 0.13 deleterious(0) probably_damaging(0.924) TCGA-UD-AAC1-01 5 147492431 147492431 C - SPINK5 Frame_Shift_Del p.Q608Sfs*107 0.24 TCGA-UD-AAC1-01 5 147813085 147813085 C T FBXO38 Nonsense_Mutation p.Q843* 0.38 TCGA-UD-AAC1-01 5 148632366 148632366 G A ABLIM3 Missense_Mutation p.R635Q 0.14 tolerated(0.2) benign(0.003) TCGA-UD-AAC1-01 5 149404105 149404105 C T HMGXB3 Missense_Mutation p.T441M 0.38 tolerated(0.23) benign(0.019) TCGA-UD-AAC1-01 5 150028905 150028905 C T SYNPO Silent p.G600G 0.44 TCGA-UD-AAC1-01 5 150660677 150660677 C T SLC36A3 Missense_Mutation p.V389I 0.41 tolerated(0.06) possibly_damaging(0.538) TCGA-UD-AAC1-01 5 153056639 153056639 G A GRIA1 Missense_Mutation p.R326H 0.49 deleterious(0.01) probably_damaging(0.977) TCGA-UD-AAC1-01 5 153149898 153149898 C A GRIA1 Silent p.P741P 0.34 TCGA-UD-AAC1-01 5 154395524 154395524 G T KIF4B Missense_Mutation p.R702L 0.16 deleterious(0) probably_damaging(1) TCGA-UD-AAC1-01 5 167552043 167552043 G A TENM2 Missense_Mutation p.D733N 0.31 deleterious(0.03) probably_damaging(0.975) TCGA-UD-AAC1-01 5 168093449 168093449 G A SLIT3 3'UTR 0.52 TCGA-UD-AAC1-01 5 169480 169480 G A PLEKHG4B Missense_Mutation p.E812K 0.38 deleterious(0) probably_damaging(1) TCGA-UD-AAC1-01 5 169805957 169805957 G A KCNMB1 Silent p.S109S 0.46 TCGA-UD-AAC1-01 5 172097307 172097307 G A NEURL1B Missense_Mutation p.G184D 0.38 deleterious(0) probably_damaging(1) TCGA-UD-AAC1-01 5 176083787 176083787 G A TSPAN17 Silent p.A242A 0.32 TCGA-UD-AAC1-01 5 176761334 176761334 G A LMAN2 Silent p.I287I 0.47 TCGA-UD-AAC1-01 5 176929892 176929892 C T DOK3 3'Flank 0.67 TCGA-UD-AAC1-01 5 178310669 178310669 G A ZNF354B Missense_Mutation p.G406R 0.29 deleterious(0.03) probably_damaging(1) TCGA-UD-AAC1-01 5 179305335 179305335 G A TBC1D9B Nonsense_Mutation p.R586* 0.39 TCGA-UD-AAC1-01 5 32739136 32739136 C T NPR3 Silent p.Y353Y 0.52 TCGA-UD-AAC1-01 5 34821882 34821882 A T RAI14 Missense_Mutation p.D350V 0.40 deleterious(0) probably_damaging(0.961) TCGA-UD-AAC1-01 5 37052604 37052604 G A NIPBL Missense_Mutation p.R2400H 0.44 deleterious(0) probably_damaging(0.999) TCGA-UD-AAC1-01 5 41149449 41149449 G A C6 Silent p.D839D 0.43 TCGA-UD-AAC1-01 5 52218713 52218713 A C ITGA1 Missense_Mutation p.E800A 0.15 tolerated(0.74) benign(0.063) TCGA-UD-AAC1-01 5 55406988 55406988 G C ANKRD55 Silent p.V529V 0.11 TCGA-UD-AAC1-01 5 72427553 72427553 C T TMEM171 Missense_Mutation p.P324L 0.50 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-UD-AAC1-01 5 74959302 74959302 C T ANKDD1B Silent p.Y393Y 0.39 TCGA-UD-AAC1-01 5 75904942 75904942 G A IQGAP2 Intron 0.42 TCGA-UD-AAC1-01 5 75993845 75993845 C T IQGAP2 Nonsense_Mutation p.R1414* 0.35 TCGA-UD-AAC1-01 5 79335943 79335943 C T THBS4 Silent p.G44G 0.42 TCGA-UD-AAC1-01 5 96106290 96106290 C T CAST Missense_Mutation p.A734V 0.41 deleterious(0.03) probably_damaging(0.999) TCGA-UD-AAC1-01 6 126211906 126211906 C T NCOA7 Silent p.Y682Y 0.69 TCGA-UD-AAC1-01 6 13281207 13281207 G A TBC1D7 Intron 0.65 TCGA-UD-AAC1-01 6 133014444 133014444 A C VNN1 Missense_Mutation p.F182C 0.41 deleterious(0) probably_damaging(1) TCGA-UD-AAC1-01 6 135317963 135317963 G A HBS1L Missense_Mutation p.S306L 0.74 deleterious(0) probably_damaging(1) TCGA-UD-AAC1-01 6 146480697 146480697 G A GRM1 Missense_Mutation p.R305H 0.70 deleterious(0.03) possibly_damaging(0.805) TCGA-UD-AAC1-01 6 149983274 149983274 C T LATS1 Missense_Mutation p.R995H 0.69 deleterious(0) probably_damaging(1) TCGA-UD-AAC1-01 6 160169451 160169451 G A WTAP Intron 0.63 TCGA-UD-AAC1-01 6 161470340 161470340 C T MAP3K4 Missense_Mutation p.R346C 0.71 tolerated(0.1) probably_damaging(0.915) TCGA-UD-AAC1-01 6 166720895 166720895 A G PRR18 Missense_Mutation p.Y246H 0.66 deleterious(0) possibly_damaging(0.607) TCGA-UD-AAC1-01 6 17873612 17873612 G A KIF13A Silent p.Y72Y 0.74 TCGA-UD-AAC1-01 6 26107688 26107688 G A HIST1H1T 3'UTR 0.65 TCGA-UD-AAC1-01 6 35109083 35109083 C T TCP11 5'UTR 0.77 TCGA-UD-AAC1-01 6 37439639 37439639 C T CMTR1 Nonsense_Mutation p.R527* 0.70 TCGA-UD-AAC1-01 6 43476143 43476143 G A LRRC73 Missense_Mutation p.T150M 0.67 deleterious(0) probably_damaging(0.987) TCGA-UD-AAC1-01 6 53519013 53519013 G A KLHL31 Missense_Mutation p.A353V 0.58 tolerated(0.22) benign(0.424) TCGA-UD-AAC1-01 6 75864163 75864163 G A COL12A1 Silent p.S1178S 0.62 TCGA-UD-AAC1-01 6 89890146 89890146 G A GABRR1 Silent p.R337R 0.68 TCGA-UD-AAC1-01 7 100252740 100252740 C T ACTL6B Missense_Mutation p.E91K 0.46 tolerated(0.09) possibly_damaging(0.477) TCGA-UD-AAC1-01 7 100414977 100414977 G A EPHB4 Silent p.G475G 0.46 TCGA-UD-AAC1-01 7 114330005 114330005 G A FOXP2 3'UTR 0.36 TCGA-UD-AAC1-01 7 117375047 117375047 G A CTTNBP2 Missense_Mutation p.R1266C 0.42 deleterious(0) probably_damaging(0.973) TCGA-UD-AAC1-01 7 128363347 128363347 G A FAM71F1 Missense_Mutation p.D262N 0.37 tolerated(0.13) probably_damaging(0.999) TCGA-UD-AAC1-01 7 128588310 128588310 C T IRF5 Silent p.F409F 0.33 TCGA-UD-AAC1-01 7 134878091 134878091 C T WDR91 Silent p.P517P 0.40 TCGA-UD-AAC1-01 7 134882801 134882801 G A WDR91 Missense_Mutation p.R332C 0.46 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-UD-AAC1-01 7 135370373 135370373 G A SLC13A4 Missense_Mutation p.P501L 0.39 tolerated(0.78) possibly_damaging(0.487) TCGA-UD-AAC1-01 7 139737546 139737546 G A PARP12 Silent p.A431A 0.37 TCGA-UD-AAC1-01 7 146818173 146818173 G A CNTNAP2 Missense_Mutation p.R286Q 0.10 tolerated(0.19) possibly_damaging(0.487) TCGA-UD-AAC1-01 7 148921201 148921201 G A ZNF282 Missense_Mutation p.G493D 0.39 tolerated(0.62) probably_damaging(0.998) TCGA-UD-AAC1-01 7 150417734 150417734 G A GIMAP1 Silent p.E214E 0.37 TCGA-UD-AAC1-01 7 156801742 156801742 C T MNX1 Intron 0.34 TCGA-UD-AAC1-01 7 2284301 2284301 G A NUDT1 Missense_Mutation p.R54Q 0.37 deleterious(0.03) possibly_damaging(0.842) TCGA-UD-AAC1-01 7 2649816 2649816 C T IQCE 3'UTR 0.37 TCGA-UD-AAC1-01 7 30492469 30492469 G A NOD1 Silent p.T188T 0.45 TCGA-UD-AAC1-01 7 30961767 30961767 C T AQP1 Silent p.T157T 0.04 TCGA-UD-AAC1-01 7 4002384 4002384 C T SDK1 Missense_Mutation p.R444C 0.43 deleterious(0.04) possibly_damaging(0.773) TCGA-UD-AAC1-01 7 42187878 42187878 C T GLI3 Missense_Mutation p.R105H 0.49 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-UD-AAC1-01 7 4841441 4841442 - G RADIL Frame_Shift_Ins p.H896Afs*18 0.29 TCGA-UD-AAC1-01 7 4917471 4917471 G A RADIL Silent p.Y100Y 0.37 TCGA-UD-AAC1-01 7 51287451 51287451 C T COBL Missense_Mutation p.V78M 0.44 deleterious(0.05) possibly_damaging(0.73) TCGA-UD-AAC1-01 7 5545208 5545208 G A FBXL18 Silent p.D24D 0.17 TCGA-UD-AAC1-01 7 56049191 56049191 G A GBAS Missense_Mutation p.E102K 0.41 tolerated(0.61) benign(0.002) TCGA-UD-AAC1-01 7 5922221 5922221 C T OCM Silent p.N53N 0.04 TCGA-UD-AAC1-01 7 65557837 65557837 C T ASL Missense_Mutation p.R445C 0.38 deleterious(0.01) benign(0.011) TCGA-UD-AAC1-01 7 6836300 6836300 C T RSPH10B2 Missense_Mutation p.R779C 0.37 tolerated(0.05) possibly_damaging(0.714) TCGA-UD-AAC1-01 7 75910817 75910817 C A SRRM3 Missense_Mutation p.P356Q 0.06 tolerated(0.19) unknown(0) TCGA-UD-AAC1-01 7 87053296 87053296 C T ABCB4 Missense_Mutation p.V713M 0.41 deleterious(0.03) benign(0.407) TCGA-UD-AAC1-01 7 90741928 90741928 C T CDK14 Missense_Mutation p.S391L 0.46 deleterious(0.01) benign(0.441) TCGA-UD-AAC1-01 7 92136382 92136382 G A PEX1 Missense_Mutation p.R577C 0.41 deleterious(0.04) benign(0.021) TCGA-UD-AAC1-01 7 98741640 98741651 CCGCCGCCGCCT - SMURF1 5'UTR 0.31 TCGA-UD-AAC1-01 7 99798468 99798468 C T STAG3 Missense_Mutation p.A646V 0.43 deleterious(0) probably_damaging(0.983) TCGA-UD-AAC1-01 8 102701529 102701529 C T NCALD 3'UTR 0.32 TCGA-UD-AAC1-01 8 127569244 127569257 GGTACTGAGCCTGC - FAM84B Frame_Shift_Del p.Q127Afs*8 0.68 TCGA-UD-AAC1-01 8 133826920 133826920 A G PHF20L1 Silent p.E323E 0.75 TCGA-UD-AAC1-01 8 143399906 143399906 G A TSNARE1 Missense_Mutation p.P328L 0.60 tolerated(0.22) benign(0.002) TCGA-UD-AAC1-01 8 143694447 143694447 C T ARC Missense_Mutation p.E396K 0.64 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-UD-AAC1-01 8 145753060 145753060 C T C8orf82 Missense_Mutation p.R106H 0.71 deleterious(0.01) probably_damaging(1) TCGA-UD-AAC1-01 8 21996056 21996056 G A REEP4 Missense_Mutation p.R240C 0.66 tolerated(0.08) probably_damaging(0.932) TCGA-UD-AAC1-01 8 25158108 25158108 C T DOCK5 Missense_Mutation p.R261C 0.71 deleterious(0) possibly_damaging(0.836) TCGA-UD-AAC1-01 8 3205675 3205675 C T CSMD1 Missense_Mutation p.G1105R 0.70 probably_damaging(1) TCGA-UD-AAC1-01 8 38175549 38175549 C T WHSC1L1 Intron 0.29 TCGA-UD-AAC1-01 8 41542095 41542095 G A ANK1 Missense_Mutation p.R1543C 0.66 deleterious(0.01) possibly_damaging(0.828) TCGA-UD-AAC1-01 8 8747593 8747593 C T MFHAS1 Silent p.S992S 0.64 TCGA-UD-AAC1-01 9 104432412 104432412 G A GRIN3A Missense_Mutation p.T761M 0.70 deleterious(0) probably_damaging(1) TCGA-UD-AAC1-01 9 112899208 112899208 G A PALM2-AKAP2 Missense_Mutation p.V462I 0.65 deleterious(0.01) possibly_damaging(0.622) TCGA-UD-AAC1-01 9 117846594 117846594 C T TNC Silent p.T675T 0.62 TCGA-UD-AAC1-01 9 123667461 123667461 C T TRAF1 Missense_Mutation p.R363Q 0.72 deleterious(0) probably_damaging(0.959) TCGA-UD-AAC1-01 9 136219331 136219331 C T SURF1 Missense_Mutation p.A241T 0.65 tolerated(0.35) benign(0.025) TCGA-UD-AAC1-01 9 2718400 2718400 C T KCNV2 Missense_Mutation p.R221C 0.66 deleterious(0.01) possibly_damaging(0.856) TCGA-UD-AAC1-01 9 37860074 37860074 G A DCAF10 Missense_Mutation p.V399I 0.71 tolerated(0.67) benign(0.025) TCGA-UD-AAC1-01 9 97355860 97355860 C T FBP2 Missense_Mutation p.R50H 0.74 deleterious(0) probably_damaging(0.946) TCGA-UD-AAC1-01 X 103495012 103495012 G A ESX1 Missense_Mutation p.A373V 0.72 deleterious_low_confidence(0.02) unknown(0) TCGA-UD-AAC1-01 X 106844105 106844105 G A FRMPD3 Missense_Mutation p.D979N 0.70 deleterious_low_confidence(0.01) probably_damaging(0.96) TCGA-UD-AAC1-01 X 114426336 114426336 C T RBMXL3 Missense_Mutation p.R778C 0.68 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-UD-AAC1-01 X 140995802 140995802 C T MAGEC1 Missense_Mutation p.S871F 0.69 deleterious_low_confidence(0.01) unknown(0) TCGA-UD-AAC1-01 X 151560699 151560699 G A GABRA3 Intron 0.70 TCGA-UD-AAC1-01 X 153042673 153042673 G A PLXNB3 Silent p.T1669T 0.37 TCGA-UD-AAC1-01 X 3229307 3229307 C T MXRA5 Missense_Mutation p.E2313K 0.66 tolerated(0.18) possibly_damaging(0.847) TCGA-UD-AAC1-01 X 32583927 32583929 AAG - DMD In_Frame_Del p.L628del 0.76 TCGA-UD-AAC1-01 X 47444803 47444803 C T TIMP1 Intron 0.69 TCGA-UD-AAC1-01 X 50125552 50125552 C T DGKK RNA 0.69 TCGA-UD-AAC1-01 X 53230757 53230757 C T KDM5C Missense_Mutation p.R679H 0.08 deleterious(0.01) benign(0.432) TCGA-UD-AAC1-01 X 54785418 54785418 G C ITIH6 Missense_Mutation p.N363K 0.70 deleterious(0.02) possibly_damaging(0.772) TCGA-UD-AAC1-01 X 69262097 69262097 G A AWAT2 Missense_Mutation p.R263C 0.68 tolerated(0.1) benign(0.2) TCGA-UD-AAC1-01 X 73963249 73963249 G T KIAA2022 Missense_Mutation p.D381E 0.73 tolerated(0.47) benign(0.034) TCGA-UD-AAC1-01 X 83480794 83480794 G A MIR548I4 RNA 0.80 TCGA-UD-AAC4-01 10 120914644 120914644 G T SFXN4 Missense_Mutation p.S221Y 0.20 tolerated(1) benign(0.038) TCGA-UD-AAC4-01 10 33559624 33559624 G T NRP1 Missense_Mutation p.R137S 0.29 deleterious(0) probably_damaging(0.983) TCGA-UD-AAC4-01 10 75407574 75407574 C T SYNPO2L Silent p.Q612Q 0.29 TCGA-UD-AAC4-01 11 100211923 100211923 G A CNTN5 Missense_Mutation p.V1006I 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-UD-AAC4-01 11 59837934 59837934 T G MS4A3 3'UTR 0.33 TCGA-UD-AAC4-01 11 64323728 64323728 G A SLC22A11 Missense_Mutation p.R86H 0.33 tolerated(0.15) benign(0.246) TCGA-UD-AAC4-01 11 67201956 67201956 G A RPS6KB2 Splice_Site p.X385_splice 0.30 TCGA-UD-AAC4-01 12 129294596 129294596 C T SLC15A4 Missense_Mutation p.M301I 0.26 tolerated(0.48) benign(0.002) TCGA-UD-AAC4-01 12 63182096 63182097 CT - PPM1H Frame_Shift_Del p.R260Efs*4 0.24 TCGA-UD-AAC4-01 12 97328964 97328964 T A NEDD1 Missense_Mutation p.Y241N 0.20 deleterious(0) probably_damaging(0.997) TCGA-UD-AAC4-01 13 32800084 32800084 G C FRY Missense_Mutation p.A1727P 0.26 tolerated(0.36) benign(0.001) TCGA-UD-AAC4-01 13 46801767 46801767 A C LRRC63 Missense_Mutation p.N69T 0.34 tolerated(0.14) benign(0.164) TCGA-UD-AAC4-01 14 102453922 102453922 C T DYNC1H1 Missense_Mutation p.H891Y 0.27 benign(0.001) TCGA-UD-AAC4-01 14 33291974 33291974 G A AKAP6 Missense_Mutation p.R1652Q 0.25 deleterious(0) probably_damaging(0.996) TCGA-UD-AAC4-01 17 39887763 39887763 C A HAP1 Nonsense_Mutation p.E351* 0.15 TCGA-UD-AAC4-01 17 42990789 42990789 C T GFAP Missense_Mutation p.E210K 0.21 deleterious(0) possibly_damaging(0.535) TCGA-UD-AAC4-01 17 62818459 62818459 G A RNU7-115P 3'Flank 0.14 TCGA-UD-AAC4-01 17 78449842 78449842 T G NPTX1 Missense_Mutation p.Q135H 0.30 deleterious(0.01) possibly_damaging(0.73) TCGA-UD-AAC4-01 18 67833406 67833406 G A RTTN Silent p.A607A 0.27 TCGA-UD-AAC4-01 19 10169768 10169768 G T C3P1 RNA 0.18 TCGA-UD-AAC4-01 19 17256232 17256234 ACA - MYO9B In_Frame_Del p.N292del 0.15 TCGA-UD-AAC4-01 19 18965480 18965480 C G UPF1 Missense_Mutation p.F409L 0.19 deleterious(0.01) benign(0.055) TCGA-UD-AAC4-01 19 19330021 19330021 C T NCAN Missense_Mutation p.T124M 0.20 deleterious(0) probably_damaging(0.999) TCGA-UD-AAC4-01 19 37211204 37211204 T G ZNF567 Missense_Mutation p.I495M 0.25 tolerated(0.06) probably_damaging(0.999) TCGA-UD-AAC4-01 19 53087417 53087417 C T ZNF701 3'UTR 0.33 TCGA-UD-AAC4-01 19 7682268 7682268 G A CAMSAP3 Missense_Mutation p.R1117Q 0.42 deleterious(0.03) probably_damaging(0.947) TCGA-UD-AAC4-01 1 35227286 35227286 G T GJB4 Missense_Mutation p.G144V 0.17 tolerated(1) benign(0.013) TCGA-UD-AAC4-01 1 40421015 40421015 C T MFSD2A Silent p.P17P 0.18 TCGA-UD-AAC4-01 20 62200346 62200346 G A HELZ2 Silent p.T365T 0.21 TCGA-UD-AAC4-01 2 27301663 27301663 G C EMILIN1 5'UTR 0.24 TCGA-UD-AAC4-01 2 36583489 36583489 C G CRIM1 Silent p.V18V 0.25 TCGA-UD-AAC4-01 3 183543240 183543240 G A MAP6D1 Silent p.G32G 0.23 TCGA-UD-AAC4-01 3 52440394 52440394 T C BAP1 Splice_Site p.X220_splice 0.28 TCGA-UD-AAC4-01 4 126367692 126367692 C G FAT4 Missense_Mutation p.L2480V 0.31 benign(0.102) TCGA-UD-AAC4-01 4 128685399 128685399 T C SLC25A31 Missense_Mutation p.F121S 0.15 deleterious(0) possibly_damaging(0.545) TCGA-UD-AAC4-01 4 41633453 41633454 CT - LIMCH1 Intron 0.22 TCGA-UD-AAC4-01 4 42658978 42658978 G C ATP8A1 5'UTR 0.34 TCGA-UD-AAC4-01 5 132159132 132159132 C T SHROOM1 Nonsense_Mutation p.W679* 0.33 TCGA-UD-AAC4-01 6 106967883 106967883 C T AIM1 Missense_Mutation p.P526S 0.32 tolerated_low_confidence(0.18) benign(0.221) TCGA-UD-AAC4-01 6 111693857 111693858 - AA REV3L Frame_Shift_Ins p.E1901Lfs*30 0.20 TCGA-UD-AAC4-01 6 152783902 152783902 T G SYNE1 Missense_Mutation p.N741H 0.25 benign(0.145) TCGA-UD-AAC4-01 7 55498916 55498916 C G LANCL2 Intron 0.26 TCGA-UD-AAC4-01 7 77539621 77539621 C A PHTF2 Missense_Mutation p.T190K 0.34 tolerated(0.36) probably_damaging(0.999) TCGA-UD-AAC4-01 8 72987559 72987559 G T TRPA1 Missense_Mutation p.T29K 0.25 tolerated(0.89) benign(0.002) TCGA-UD-AAC4-01 9 123931936 123931936 G A CNTRL Missense_Mutation p.E2040K 0.28 benign(0.048) TCGA-UD-AAC4-01 X 34149199 34149199 G A FAM47A Silent p.L399L 0.57 TCGA-UD-AAC5-01 10 50953930 50953930 C A OGDHL Missense_Mutation p.A464S 0.30 tolerated(0.16) benign(0.364) TCGA-UD-AAC5-01 11 605252 605252 C A PHRF1 Missense_Mutation p.A429D 0.21 deleterious(0) probably_damaging(1) TCGA-UD-AAC5-01 11 65810262 65810262 C A GAL3ST3 Missense_Mutation p.D338Y 0.15 deleterious(0.01) possibly_damaging(0.574) TCGA-UD-AAC5-01 11 77301224 77301224 G A AQP11 Missense_Mutation p.E63K 0.46 deleterious(0) probably_damaging(0.996) TCGA-UD-AAC5-01 12 20799437 20799437 C T PDE3A Silent p.I755I 0.25 TCGA-UD-AAC5-01 15 24921902 24921902 G A NPAP1 Silent p.L296L 0.09 TCGA-UD-AAC5-01 17 45380142 45380142 C A ITGB3 Silent p.V690V 0.23 TCGA-UD-AAC5-01 17 56292144 56292144 C A MKS1 Missense_Mutation p.R158L 0.20 deleterious(0.01) probably_damaging(0.975) TCGA-UD-AAC5-01 17 7577610 7577610 T A TP53 Splice_Site p.X225_splice 0.45 TCGA-UD-AAC5-01 18 12485957 12485957 C A SPIRE1 Splice_Site p.X411_splice 0.44 TCGA-UD-AAC5-01 19 17394489 17394489 C G ANKLE1 Missense_Mutation p.P306A 0.36 tolerated(0.11) benign(0.015) TCGA-UD-AAC5-01 19 21607630 21607630 C T ZNF493 Silent p.N723N 0.43 TCGA-UD-AAC5-01 19 58220405 58220405 G T ZNF154 5'UTR 0.55 TCGA-UD-AAC5-01 1 211842664 211842664 C T NEK2 Missense_Mutation p.R259Q 0.34 deleterious(0) probably_damaging(1) TCGA-UD-AAC5-01 1 62941517 62941517 A C DOCK7 Missense_Mutation p.F1910C 0.07 deleterious(0) probably_damaging(1) TCGA-UD-AAC5-01 20 33057864 33057864 C G ITCH Missense_Mutation p.P520R 0.49 deleterious(0.01) benign(0.05) TCGA-UD-AAC5-01 20 62005392 62005392 A G RP11-261N11.8 3'Flank 0.17 TCGA-UD-AAC5-01 22 30070931 30070931 G C NF2 Splice_Site p.X482_splice 0.50 TCGA-UD-AAC5-01 2 235404757 235404757 C A ARL4C Missense_Mutation p.Q158H 0.43 deleterious(0) probably_damaging(0.949) TCGA-UD-AAC5-01 2 242063376 242063376 G C PASK Silent p.P964P 0.57 TCGA-UD-AAC5-01 3 48630626 48630628 GAA - COL7A1 In_Frame_Del p.F197del 0.24 TCGA-UD-AAC5-01 4 48035072 48035072 C A NIPAL1 Missense_Mutation p.P145T 0.08 deleterious(0) possibly_damaging(0.825) TCGA-UD-AAC5-01 5 140865011 140865011 G T PCDHGC4 Missense_Mutation p.D91Y 0.22 deleterious(0) probably_damaging(1) TCGA-UD-AAC5-01 5 15936786 15936786 T A FBXL7 Missense_Mutation p.C323S 0.41 deleterious(0.04) probably_damaging(0.987) TCGA-UD-AAC5-01 5 37299590 37299590 A C NUP155 Silent p.P1214P 0.57 TCGA-UD-AAC5-01 5 38557555 38557555 C T LIFR Intron 0.19 TCGA-UD-AAC5-01 6 41908260 41908260 A C CCND3 Missense_Mutation p.Y88D 0.31 deleterious(0) probably_damaging(0.992) TCGA-UD-AAC5-01 7 5336623 5336623 G T SLC29A4 Missense_Mutation p.D226Y 0.16 deleterious(0) probably_damaging(0.99) TCGA-UD-AAC5-01 8 117783784 117783784 T C UTP23 Silent p.S151S 0.62 TCGA-UD-AAC5-01 8 21966898 21966899 - CCGCTCCCAGTCCCTGCGGAGA NUDT18 5'UTR 0.08 TCGA-UD-AAC5-01 8 87520849 87520849 T C RMDN1 Translation_Start_Site p.M1? 0.68 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-UD-AAC5-01 9 115930833 115930833 G A FKBP15 Silent p.L1163L 0.40 TCGA-UD-AAC5-01 9 130691990 130691990 C A PIP5KL1 Missense_Mutation p.V69F 0.45 tolerated(0.54) possibly_damaging(0.748) TCGA-UD-AAC5-01 X 3242301 3242301 G A MXRA5 Silent p.S475S 0.82 TCGA-UD-AAC6-01 10 108924082 108924082 G A SORCS1 Missense_Mutation p.T68M 0.22 tolerated_low_confidence(0.25) benign(0.001) TCGA-UD-AAC6-01 10 114053774 114053774 C T TECTB Missense_Mutation p.S209L 0.23 deleterious(0) possibly_damaging(0.813) TCGA-UD-AAC6-01 10 79397345 79397347 CCG - KCNMA1 In_Frame_Del p.G20del 0.24 TCGA-UD-AAC6-01 11 111594710 111594710 C - SIK2 Frame_Shift_Del p.P880Qfs*19 0.19 TCGA-UD-AAC6-01 11 24750815 24750815 A G LUZP2 Missense_Mutation p.I55V 0.21 deleterious(0.02) probably_damaging(0.927) TCGA-UD-AAC6-01 11 60609615 60609615 G C CCDC86 Missense_Mutation p.R6S 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-UD-AAC6-01 12 42538470 42538471 - CGCCGCCGCCGCCGC GXYLT1 5'UTR 0.21 TCGA-UD-AAC6-01 12 56482578 56482578 G A ERBB3 Silent p.S345S 0.21 TCGA-UD-AAC6-01 12 98909687 98909687 C T TMPO Silent p.D14D 0.21 TCGA-UD-AAC6-01 14 23817411 23817411 T A SLC22A17 Missense_Mutation p.H266L 0.22 tolerated(0.71) benign(0.003) TCGA-UD-AAC6-01 14 51210175 51210175 T G NIN Missense_Mutation p.S1754R 0.22 tolerated(0.05) possibly_damaging(0.798) TCGA-UD-AAC6-01 16 30004431 30004431 C T HIRIP3 3'UTR 0.22 TCGA-UD-AAC6-01 17 17697913 17697913 G A RAI1 Missense_Mutation p.E551K 0.27 deleterious(0) probably_damaging(0.996) TCGA-UD-AAC6-01 17 36622933 36622933 G A ARHGAP23 Missense_Mutation p.A337T 0.36 tolerated(1) benign(0.008) TCGA-UD-AAC6-01 18 39609311 39609311 T C PIK3C3 Missense_Mutation p.M538T 0.17 tolerated(0.28) benign(0.01) TCGA-UD-AAC6-01 18 43671765 43671765 G C ATP5A1 Silent p.T64T 0.28 TCGA-UD-AAC6-01 1 147381109 147381109 G A GJA8 Missense_Mutation p.E343K 0.18 tolerated(0.16) benign(0.225) TCGA-UD-AAC6-01 1 207268801 207268801 A G C4BPB Intron 0.08 TCGA-UD-AAC6-01 1 207268813 207268813 T C C4BPB Intron 0.08 TCGA-UD-AAC6-01 1 226075205 226075205 G A RP4-559A3.7 Missense_Mutation p.A319V 0.22 unknown(0) TCGA-UD-AAC6-01 1 77987583 77987583 C T AK5 Silent p.D461D 0.19 TCGA-UD-AAC6-01 20 50408168 50408168 G A SALL4 Missense_Mutation p.S285F 0.29 deleterious(0) possibly_damaging(0.613) TCGA-UD-AAC6-01 22 16287808 16287808 C T POTEH Silent p.K26K 0.18 TCGA-UD-AAC6-01 22 24135796 24135796 G A SMARCB1 Missense_Mutation p.E95K 0.30 deleterious(0.03) probably_damaging(0.967) TCGA-UD-AAC6-01 2 212989576 212989576 C A ERBB4 Missense_Mutation p.Q45H 0.28 tolerated(1) benign(0.013) TCGA-UD-AAC6-01 3 178951900 178951900 C A PIK3CA Nonsense_Mutation p.Y985* 0.13 TCGA-UD-AAC6-01 3 179051734 179051734 G T ZNF639 Missense_Mutation p.D328Y 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-UD-AAC6-01 3 179320472 179320472 G A MRPL47 Missense_Mutation p.P71L 0.23 deleterious(0) probably_damaging(0.955) TCGA-UD-AAC6-01 3 196736504 196736504 A T MFI2 Missense_Mutation p.C504S 0.18 deleterious(0) possibly_damaging(0.629) TCGA-UD-AAC6-01 4 110791652 110791652 C G LRIT3 Missense_Mutation p.L583V 0.24 tolerated(0.26) benign(0.017) TCGA-UD-AAC6-01 5 140562480 140562480 A G PCDHB16 Missense_Mutation p.I116V 0.35 tolerated_low_confidence(0.26) benign(0.008) TCGA-UD-AAC6-01 6 11104458 11104458 G A ERVFRD-1 Silent p.G362G 0.31 TCGA-UD-AAC6-01 6 19838428 19838428 T C ID4 Splice_Site p.X147_splice 0.42 TCGA-UD-AAC6-01 6 30627578 30627578 C A DHX16 Missense_Mutation p.V597L 0.22 deleterious(0.02) unknown(0) TCGA-UD-AAC6-01 6 4032537 4032537 G A PRPF4B Silent p.K262K 0.23 TCGA-UD-AAC6-01 6 44268910 44268910 C A AARS2 Missense_Mutation p.A926S 0.35 deleterious(0.03) possibly_damaging(0.872) TCGA-UD-AAC6-01 7 139636025 139636025 C T TBXAS1 Silent p.S124S 0.38 TCGA-UD-AAC6-01 8 1844579 1844579 A T ARHGEF10 Silent p.T507T 0.28 TCGA-UD-AAC6-01 8 22031216 22031216 A T BMP1 Missense_Mutation p.I84F 0.26 tolerated(0.72) benign(0) TCGA-UD-AAC6-01 9 100745746 100745746 T A ANP32B 5'UTR 0.14 TCGA-UD-AAC6-01 9 100745747 100745747 C A ANP32B 5'UTR 0.14 TCGA-UD-AAC6-01 9 74863197 74863197 G A GDA Missense_Mutation p.R435Q 0.15 deleterious(0.03) probably_damaging(0.994) TCGA-UD-AAC6-01 X 100507649 100507649 G A DRP2 Missense_Mutation p.G641S 0.53 deleterious(0) probably_damaging(1) TCGA-UD-AAC6-01 X 154159245 154159245 T A F8 Silent p.L940L 0.42 TCGA-UD-AAC7-01 11 55872982 55872982 A T OR8H2 Missense_Mutation p.D155V 0.16 tolerated(0.07) benign(0.062) TCGA-UD-AAC7-01 12 101679537 101679537 C T UTP20 Silent p.Y68Y 0.28 TCGA-UD-AAC7-01 12 107168467 107168467 C T RP11-144F15.1 Splice_Site p.X70_splice 0.16 TCGA-UD-AAC7-01 12 53861152 53861152 A G PCBP2 Intron 0.29 TCGA-UD-AAC7-01 14 55615361 55615361 C A DLGAP5 Intron 0.09 TCGA-UD-AAC7-01 15 31862307 31862307 C T OTUD7A Missense_Mutation p.R82Q 0.11 tolerated(0.09) benign(0.178) TCGA-UD-AAC7-01 16 3486963 3486963 C T ZNF597 Missense_Mutation p.G246S 0.32 deleterious(0.01) probably_damaging(0.933) TCGA-UD-AAC7-01 16 3778928 3778928 T A CREBBP Silent p.I2040I 0.30 TCGA-UD-AAC7-01 17 38644938 38644938 C T TNS4 Silent p.S241S 0.32 TCGA-UD-AAC7-01 17 7578419 7578419 C - TP53 Frame_Shift_Del p.E171Rfs*3 0.20 TCGA-UD-AAC7-01 18 63548168 63548168 T G CDH7 3'UTR 0.28 TCGA-UD-AAC7-01 19 18546983 18546983 C A ISYNA1 Silent p.G278G 0.26 TCGA-UD-AAC7-01 19 39967162 39967162 T G SUPT5H 3'UTR 0.54 TCGA-UD-AAC7-01 19 56090168 56090168 C T ZNF579 Missense_Mutation p.A280T 0.33 tolerated(0.44) probably_damaging(0.968) TCGA-UD-AAC7-01 19 57868163 57868163 G C ZNF304 Missense_Mutation p.C309S 0.25 deleterious(0) probably_damaging(1) TCGA-UD-AAC7-01 1 2322971 2322972 - TCTTGCCG MORN1 Frame_Shift_Ins p.M1? 0.36 TCGA-UD-AAC7-01 22 30035078 30035078 G A NF2 Splice_Site p.X81_splice 0.27 TCGA-UD-AAC7-01 2 128038165 128038165 C T ERCC3 Missense_Mutation p.C462Y 0.15 deleterious(0) probably_damaging(0.969) TCGA-UD-AAC7-01 2 152371378 152371378 G A NEB Missense_Mutation p.T7657M 0.20 probably_damaging(1) TCGA-UD-AAC7-01 2 179581862 179581862 G A TTN Silent p.I8533I 0.27 TCGA-UD-AAC7-01 5 140048263 140048263 T C WDR55 Silent p.G149G 0.05 TCGA-UD-AAC7-01 6 135239520 135239520 C T ALDH8A1 3'UTR 0.39 TCGA-UD-AAC7-01 6 44233455 44233455 G A NFKBIE Nonsense_Mutation p.Q16* 0.26 TCGA-UD-AAC7-01 7 75912295 75912295 G A SRRM3 Missense_Mutation p.E537K 0.12 tolerated(0.08) benign(0.305) TCGA-UD-AAC7-01 8 2965274 2965274 T G CSMD1 Silent p.A2267A 0.15 TCGA-UD-AAC7-01 8 9912166 9912166 C T MSRA Missense_Mutation p.A47V 0.30 tolerated(0.08) benign(0.005) TCGA-UD-AAC7-01 9 125273629 125273629 C A OR1J2 Silent p.A183A 0.31 TCGA-UD-AAC7-01 X 53112479 53112479 G A TSPYL2 Missense_Mutation p.V267I 0.18 deleterious(0.03) possibly_damaging(0.605) TCGA-UT-A88C-01 11 107925444 107925444 T G CUL5 Missense_Mutation p.D208E 0.19 tolerated(1) benign(0.001) TCGA-UT-A88C-01 11 122775018 122775018 C T C11orf63 Missense_Mutation p.R244C 0.11 deleterious(0) probably_damaging(0.941) TCGA-UT-A88C-01 14 105411783 105411783 C T AHNAK2 Silent p.A3335A 0.19 TCGA-UT-A88C-01 14 31062828 31062828 C T G2E3 Missense_Mutation p.H171Y 0.11 deleterious(0) probably_damaging(0.998) TCGA-UT-A88C-01 14 51450119 51450119 A T TRIM9 Intron 0.24 TCGA-UT-A88C-01 16 14724073 14724073 G A PARN 5'UTR 0.30 TCGA-UT-A88C-01 16 2009559 2009559 C G NDUFB10 5'UTR 0.33 TCGA-UT-A88C-01 16 69370578 69370578 G A COG8 Missense_Mutation p.R139C 0.26 deleterious(0) probably_damaging(0.999) TCGA-UT-A88C-01 16 79633354 79633354 G C MAF Missense_Mutation p.S149C 0.23 tolerated(0.17) unknown(0) TCGA-UT-A88C-01 17 53038774 53038774 G A COX11 3'UTR 0.18 TCGA-UT-A88C-01 18 61262364 61262364 C T SERPINB13 Silent p.N239N 0.04 TCGA-UT-A88C-01 19 14829121 14829121 T C ZNF333 Missense_Mutation p.Y328H 0.15 tolerated(0.42) benign(0.403) TCGA-UT-A88C-01 19 19756484 19756484 T C ATP13A1 Missense_Mutation p.Q1159R 0.16 tolerated(0.08) benign(0.374) TCGA-UT-A88C-01 21 15746540 15746540 A T HSPA13 Missense_Mutation p.Y272N 0.17 tolerated(0.23) benign(0.017) TCGA-UT-A88C-01 22 22892423 22892423 G T PRAME Silent p.I226I 0.18 TCGA-UT-A88C-01 2 113416634 113416634 C T SLC20A1 Silent p.D337D 0.10 TCGA-UT-A88C-01 2 139308604 139308604 G A SPOPL Missense_Mutation p.R111K 0.22 tolerated(0.56) possibly_damaging(0.595) TCGA-UT-A88C-01 2 69049990 69049990 G A ARHGAP25 Silent p.E573E 0.16 TCGA-UT-A88C-01 3 100547235 100547235 A G ABI3BP Intron 0.10 TCGA-UT-A88C-01 3 32754852 32754852 A G CNOT10 Silent p.G248G 0.35 TCGA-UT-A88C-01 3 47162374 47162374 G T SETD2 Nonsense_Mutation p.S1251* 0.25 TCGA-UT-A88C-01 3 52439874 52439874 G A BAP1 Nonsense_Mutation p.Q280* 0.25 TCGA-UT-A88C-01 4 114277421 114277421 G A ANK2 Silent p.E2549E 0.05 TCGA-UT-A88C-01 5 156479499 156479499 C T HAVCR1 Missense_Mutation p.M182I 0.04 tolerated(0.41) unknown(0) TCGA-UT-A88C-01 5 156908560 156908560 G T ADAM19 Intron 0.18 TCGA-UT-A88C-01 5 180041180 180041180 C A FLT4 Splice_Site p.X1074_splice 0.18 TCGA-UT-A88C-01 5 180662171 180662171 G A TRIM41 3'UTR 0.27 TCGA-UT-A88C-01 5 55398349 55398349 G T ANKRD55 Missense_Mutation p.N565K 0.23 tolerated_low_confidence(0.05) benign(0.043) TCGA-UT-A88C-01 7 123092860 123092860 G A IQUB Silent p.I771I 0.30 TCGA-UT-A88C-01 7 138602458 138602458 G A KIAA1549 Silent p.I638I 0.38 TCGA-UT-A88C-01 7 150706570 150706570 G A NOS3 Silent p.P803P 0.39 TCGA-UT-A88C-01 7 150774609 150774609 C T FASTK Intron 0.10 TCGA-UT-A88C-01 9 94124102 94124102 C T AUH Missense_Mutation p.A24T 0.19 tolerated_low_confidence(0.13) benign(0.007) TCGA-UT-A88C-01 X 54481961 54481961 C A FGD1 Splice_Site p.X646_splice 0.11 TCGA-UT-A88D-01 10 104404538 104404538 G A TRIM8 Missense_Mutation p.C55Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-UT-A88D-01 10 121658188 121658188 C G SEC23IP Missense_Mutation p.S138W 0.19 deleterious(0.01) possibly_damaging(0.786) TCGA-UT-A88D-01 10 50530809 50530809 C T C10orf71 Silent p.G73G 0.28 TCGA-UT-A88D-01 10 75071665 75071665 G T TTC18 Missense_Mutation p.P434H 0.15 tolerated(0.06) possibly_damaging(0.526) TCGA-UT-A88D-01 11 6567317 6567317 G C DNHD1 Missense_Mutation p.Q1716H 0.22 benign(0.075) TCGA-UT-A88D-01 11 66453591 66453591 C T SPTBN2 Intron 0.14 TCGA-UT-A88D-01 12 108604035 108604035 G A WSCD2 Missense_Mutation p.R212H 0.14 deleterious(0.04) benign(0.009) TCGA-UT-A88D-01 12 2933301 2933301 T A ITFG2 Missense_Mutation p.L429H 0.19 deleterious(0) benign(0.12) TCGA-UT-A88D-01 12 53237904 53237904 C T KRT78 Silent p.Q340Q 0.07 TCGA-UT-A88D-01 12 58121022 58121022 C T AGAP2-AS1 Nonsense_Mutation p.Q83* 0.11 TCGA-UT-A88D-01 14 79081303 79081303 G A NRXN3 Intron 0.18 TCGA-UT-A88D-01 15 49917473 49917473 C T DTWD1 Nonsense_Mutation p.Q37* 0.10 TCGA-UT-A88D-01 16 10274038 10274038 G T GRIN2A Silent p.T77T 0.19 TCGA-UT-A88D-01 17 56402230 56402230 G A BZRAP1 Missense_Mutation p.P295L 0.30 deleterious(0.04) benign(0.013) TCGA-UT-A88D-01 17 62009614 62009614 C T CD79B Missense_Mutation p.R3K 0.12 tolerated(0.56) benign(0.076) TCGA-UT-A88D-01 17 72518994 72518994 G T CD300LB Silent p.L200L 0.15 TCGA-UT-A88D-01 17 72763089 72763089 C - SLC9A3R1 Frame_Shift_Del p.F259Sfs*28 0.16 TCGA-UT-A88D-01 19 11333484 11333484 G A DOCK6 Missense_Mutation p.T1056I 0.13 tolerated(0.13) benign(0.003) TCGA-UT-A88D-01 19 14167604 14167604 G A PALM3 Missense_Mutation p.R47W 0.15 deleterious(0) probably_damaging(1) TCGA-UT-A88D-01 19 1456315 1456315 C T APC2 Missense_Mutation p.A243V 0.19 possibly_damaging(0.636) TCGA-UT-A88D-01 19 15740127 15740127 G A CYP4F8 RNA 0.10 TCGA-UT-A88D-01 19 57175245 57175245 G A ZNF835 Missense_Mutation p.T441M 0.14 deleterious(0) probably_damaging(0.992) TCGA-UT-A88D-01 1 12343213 12343213 A T VPS13D Missense_Mutation p.Y1685F 0.16 possibly_damaging(0.887) TCGA-UT-A88D-01 1 214556674 214556674 C A PTPN14 Nonsense_Mutation p.E842* 0.17 TCGA-UT-A88D-01 1 216595583 216595583 C G USH2A Missense_Mutation p.E32D 0.20 benign(0) TCGA-UT-A88D-01 1 61798212 61798212 C T NFIA Silent p.V263V 0.15 TCGA-UT-A88D-01 21 22370861 22370861 C T NCAM2 5'UTR 0.21 TCGA-UT-A88D-01 22 25150024 25150024 C T PIWIL3 Missense_Mutation p.E312K 0.21 tolerated(0.06) benign(0.072) TCGA-UT-A88D-01 22 43088706 43088706 T C A4GALT 3'UTR 0.12 TCGA-UT-A88D-01 2 11944592 11944592 G C LPIN1 Missense_Mutation p.S735T 0.09 deleterious(0) probably_damaging(0.999) TCGA-UT-A88D-01 3 45132818 45132818 G A CDCP1 Missense_Mutation p.R614W 0.18 deleterious(0.02) possibly_damaging(0.799) TCGA-UT-A88D-01 3 52440300 52440300 T - BAP1 Frame_Shift_Del p.N251Tfs*6 0.25 TCGA-UT-A88D-01 5 134190991 134190991 A G C5orf24 Missense_Mutation p.Y134C 0.14 deleterious(0) probably_damaging(0.998) TCGA-UT-A88D-01 5 136964076 136964076 G A KLHL3 Missense_Mutation p.P501S 0.28 tolerated(0.21) benign(0.071) TCGA-UT-A88D-01 6 105726151 105726151 G A PREP Silent p.S667S 0.22 TCGA-UT-A88D-01 7 6452459 6452459 G A DAGLB Missense_Mutation p.H518Y 0.24 deleterious(0.01) benign(0.432) TCGA-UT-A88D-01 8 145107157 145107157 C T OPLAH Missense_Mutation p.A1126T 0.15 deleterious(0) probably_damaging(0.999) TCGA-UT-A88D-01 8 53477713 53477713 G A FAM150A Missense_Mutation p.A35V 0.19 tolerated(0.3) unknown(0) TCGA-UT-A88D-01 8 53477771 53477771 G A FAM150A Silent p.L16L 0.19 TCGA-UT-A88D-01 9 140083164 140083164 C T SSNA1 5'UTR 0.16 TCGA-UT-A88E-01 10 126655235 126655235 C G ZRANB1 Missense_Mutation p.T296S 0.47 tolerated(0.06) benign(0.001) TCGA-UT-A88E-01 11 118307508 118307508 C T KMT2A Missense_Mutation p.S94L 0.06 unknown(0) TCGA-UT-A88E-01 11 118512346 118512346 G A PHLDB1 Intron 0.66 TCGA-UT-A88E-01 11 20181848 20181848 G A DBX1 Missense_Mutation p.A8V 0.27 deleterious(0) possibly_damaging(0.892) TCGA-UT-A88E-01 11 61277154 61277154 C T LRRC10B Silent p.L228L 0.04 TCGA-UT-A88E-01 11 94277535 94277535 C T FUT4 Missense_Mutation p.S79F 0.69 deleterious_low_confidence(0.02) benign(0.189) TCGA-UT-A88E-01 11 96074969 96074969 T G MAML2 Silent p.R31R 0.70 TCGA-UT-A88E-01 12 100441907 100441907 C A UHRF1BP1L Silent p.G1262G 0.37 TCGA-UT-A88E-01 12 53588123 53588123 C T ITGB7 Silent p.L389L 0.45 TCGA-UT-A88E-01 12 86198809 86198809 T G RASSF9 Missense_Mutation p.K327Q 0.45 tolerated(0.28) benign(0.087) TCGA-UT-A88E-01 14 103571327 103571327 A G EXOC3L4 Splice_Site p.X462_splice 0.06 TCGA-UT-A88E-01 14 89171223 89171223 G A EML5 Nonsense_Mutation p.R678* 0.27 TCGA-UT-A88E-01 15 35233108 35233108 T A AQR Silent p.A211A 0.29 TCGA-UT-A88E-01 15 64067461 64067463 TAT - HERC1 In_Frame_Del p.K120_Y121delinsN 0.30 TCGA-UT-A88E-01 15 81644071 81644073 CTG - TMC3 In_Frame_Del p.Q349del 0.34 TCGA-UT-A88E-01 15 90771813 90771828 TCCCCAGTGTGCCCCC - SEMA4B Frame_Shift_Del p.S818Gfs*18 0.31 TCGA-UT-A88E-01 16 30793358 30793358 C T ZNF629 Missense_Mutation p.G764E 0.44 deleterious(0.02) probably_damaging(1) TCGA-UT-A88E-01 16 69419514 69419514 T C TERF2 Missense_Mutation p.I79V 0.31 tolerated(0.1) possibly_damaging(0.757) TCGA-UT-A88E-01 16 9856994 9856994 A - GRIN2A 3'UTR 0.32 TCGA-UT-A88E-01 17 11881548 11881548 G A ZNF18 Missense_Mutation p.T459M 0.35 deleterious(0) probably_damaging(0.994) TCGA-UT-A88E-01 17 1962032 1962032 G A HIC1 Missense_Mutation p.G702D 0.45 deleterious_low_confidence(0.01) benign(0.441) TCGA-UT-A88E-01 17 3181838 3181838 C T OR3A2 Missense_Mutation p.R131Q 0.44 deleterious(0) possibly_damaging(0.556) TCGA-UT-A88E-01 17 38574119 38574119 A G TOP2A 5'UTR 0.42 TCGA-UT-A88E-01 18 29793273 29793273 C A MEP1B Missense_Mutation p.P444T 0.40 tolerated(0.2) benign(0.012) TCGA-UT-A88E-01 19 14875247 14875247 G T EMR2 Missense_Mutation p.T361K 0.31 deleterious(0) possibly_damaging(0.703) TCGA-UT-A88E-01 19 41060266 41060266 G C SPTBN4 Missense_Mutation p.V1630L 0.03 deleterious(0.03) benign(0.193) TCGA-UT-A88E-01 19 56000810 56000810 G A SSC5D Missense_Mutation p.G48S 0.45 probably_damaging(1) TCGA-UT-A88E-01 19 9929424 9929424 C G FBXL12 Silent p.R22R 0.45 TCGA-UT-A88E-01 1 152484123 152484123 C A LCE5A Missense_Mutation p.P38H 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-UT-A88E-01 1 39760786 39760786 T G MACF1 Silent p.L746L 0.39 TCGA-UT-A88E-01 20 43850787 43850787 A C SEMG2 Missense_Mutation p.S172R 0.34 tolerated(0.26) probably_damaging(0.947) TCGA-UT-A88E-01 20 61982373 61982373 G A CHRNA4 Silent p.D130D 0.11 TCGA-UT-A88E-01 22 20785031 20785031 C A SCARF2 Missense_Mutation p.C340F 0.05 deleterious(0) probably_damaging(0.991) TCGA-UT-A88E-01 22 39239422 39239422 G T NPTXR Missense_Mutation p.Q148K 0.72 tolerated(0.64) benign(0.036) TCGA-UT-A88E-01 2 159196775 159196775 G A CCDC148 Silent p.N155N 0.49 TCGA-UT-A88E-01 2 179400498 179400498 A C TTN Missense_Mutation p.I33615S 0.35 TCGA-UT-A88E-01 2 209025629 209025629 G A CRYGA Missense_Mutation p.R142W 0.37 deleterious(0.04) benign(0.27) TCGA-UT-A88E-01 2 86276035 86276035 A C POLR1A Missense_Mutation p.V869G 0.78 deleterious(0.01) possibly_damaging(0.85) TCGA-UT-A88E-01 3 190363539 190363539 A G IL1RAP Missense_Mutation p.E418G 0.38 deleterious(0) probably_damaging(1) TCGA-UT-A88E-01 3 47163157 47163157 A C SETD2 Missense_Mutation p.V990G 0.27 deleterious_low_confidence(0.02) benign(0.021) TCGA-UT-A88E-01 3 49058092 49058092 G A DALRD3 5'Flank 0.67 TCGA-UT-A88E-01 3 77526570 77526570 C G ROBO2 Missense_Mutation p.R148G 0.33 deleterious(0) possibly_damaging(0.462) TCGA-UT-A88E-01 4 113108249 113108249 A C C4orf32 3'UTR 0.27 TCGA-UT-A88E-01 4 154523308 154523308 G A KIAA0922 Silent p.L757L 0.50 TCGA-UT-A88E-01 4 55524208 55524208 T G KIT Missense_Mutation p.D9E 0.14 tolerated(1) benign(0.006) TCGA-UT-A88E-01 5 161117315 161117315 C T GABRA6 Missense_Mutation p.S261F 0.44 deleterious(0) probably_damaging(0.999) TCGA-UT-A88E-01 5 37721297 37721297 C T WDR70 Silent p.Y499Y 0.41 TCGA-UT-A88E-01 5 40834613 40834613 G A RPL37 Silent p.T33T 0.41 TCGA-UT-A88E-01 5 6449002 6449002 G A UBE2QL1 5'UTR 0.49 TCGA-UT-A88E-01 6 121577296 121577296 T A TBC1D32 Silent p.T623T 0.47 TCGA-UT-A88E-01 6 170593010 170593010 C T DLL1 Missense_Mutation p.A453T 0.70 tolerated(0.11) benign(0.164) TCGA-UT-A88E-01 6 52129377 52129377 G A MCM3 3'UTR 0.41 TCGA-UT-A88E-01 7 146741000 146741000 C A CNTNAP2 Missense_Mutation p.A135E 0.07 tolerated(0.07) benign(0.141) TCGA-UT-A88E-01 7 158536362 158536362 T C ESYT2 Missense_Mutation p.D578G 0.49 deleterious(0.02) probably_damaging(0.99) TCGA-UT-A88E-01 7 44152342 44152342 C T AEBP1 Silent p.S801S 0.17 TCGA-UT-A88E-01 8 110986585 110986585 C T KCNV1 Silent p.S11S 0.39 TCGA-UT-A88E-01 8 124054313 124054313 T C DERL1 Missense_Mutation p.Y17C 0.39 tolerated(0.07) benign(0.151) TCGA-UT-A88E-01 8 145538000 145538000 C T HSF1 3'UTR 0.56 TCGA-UT-A88E-01 8 146076193 146076193 C T COMMD5 Silent p.L177L 0.05 TCGA-UT-A88E-01 8 55542770 55542770 C T RP1 Nonsense_Mutation p.Q2110* 0.13 TCGA-UT-A88E-01 9 139400004 139400004 C T NOTCH1 Silent p.A1448A 0.05 TCGA-UT-A88E-01 9 140952653 140952653 A G CACNA1B Missense_Mutation p.Q1420R 0.68 deleterious(0) probably_damaging(0.968) TCGA-UT-A88E-01 X 117861615 117861615 C T IL13RA1 Missense_Mutation p.A5V 1.00 tolerated(0.23) possibly_damaging(0.499) TCGA-UT-A88E-01 X 129804116 129804116 C T ENOX2 Missense_Mutation p.V202I 0.54 deleterious(0.04) probably_damaging(0.99) TCGA-UT-A88E-01 X 53279494 53279494 C A IQSEC2 Missense_Mutation p.R755L 0.10 deleterious(0.01) possibly_damaging(0.571) TCGA-UT-A88E-01 X 71822120 71822120 C T PHKA1 Missense_Mutation p.R974H 0.69 tolerated(0.07) benign(0.005) TCGA-UT-A88G-01 10 50950883 50950883 C T OGDHL Missense_Mutation p.G668D 0.72 deleterious(0) probably_damaging(1) TCGA-UT-A88G-01 11 59812171 59812171 C T OOSP2 Nonsense_Mutation p.Q91* 0.04 TCGA-UT-A88G-01 11 63742149 63742149 C T AP000721.4 5'UTR 0.48 TCGA-UT-A88G-01 12 124272496 124272496 G A DNAH10 Missense_Mutation p.E462K 0.30 benign(0.284) TCGA-UT-A88G-01 12 46254601 46254601 T G ARID2 Silent p.P1597P 0.39 TCGA-UT-A88G-01 12 53911106 53911106 A T ATF7 Missense_Mutation p.S423T 0.37 tolerated(0.21) benign(0.132) TCGA-UT-A88G-01 13 109438086 109438086 A C MYO16 Missense_Mutation p.E182A 0.76 deleterious(0) possibly_damaging(0.889) TCGA-UT-A88G-01 13 31495170 31495170 T C MEDAG Silent p.L136L 0.80 TCGA-UT-A88G-01 14 42355896 42355896 G A LRFN5 Missense_Mutation p.R23H 0.74 tolerated(0.15) possibly_damaging(0.812) TCGA-UT-A88G-01 15 25438473 25438473 G A SNORD115-11 3'Flank 0.21 TCGA-UT-A88G-01 15 42702785 42702785 G A CAPN3 Splice_Site p.X729_splice 0.43 TCGA-UT-A88G-01 15 49917465 49917465 A T DTWD1 Missense_Mutation p.D34V 0.28 deleterious(0.04) benign(0.197) TCGA-UT-A88G-01 15 57210489 57210498 GCTGTGTCTC TTGTCT TCF12 5'Flank 0.38 TCGA-UT-A88G-01 15 63414882 63414882 A - LACTB Frame_Shift_Del p.E137Kfs*7 0.30 TCGA-UT-A88G-01 15 83316651 83316651 G A CPEB1 5'UTR 0.50 TCGA-UT-A88G-01 16 2028327 2028327 C T TBL3 Silent p.R716R 0.80 TCGA-UT-A88G-01 17 31094695 31094695 T C MYO1D Missense_Mutation p.I264V 0.78 tolerated(0.46) benign(0.004) TCGA-UT-A88G-01 19 11417383 11417383 G C TSPAN16 Missense_Mutation p.S185T 0.50 tolerated(1) benign(0) TCGA-UT-A88G-01 19 5770964 5770964 C T CATSPERD Silent p.Y548Y 0.28 TCGA-UT-A88G-01 19 8467127 8467127 C T RAB11B Missense_Mutation p.R132W 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-UT-A88G-01 19 9921974 9921974 C - FBXL12 Frame_Shift_Del p.L194Wfs*42 0.40 TCGA-UT-A88G-01 1 165649854 165649854 T C ALDH9A1 Missense_Mutation p.Y220C 0.55 deleterious(0.03) possibly_damaging(0.471) TCGA-UT-A88G-01 1 19181066 19181066 C T TAS1R2 Missense_Mutation p.A300T 0.31 deleterious(0) probably_damaging(0.998) TCGA-UT-A88G-01 1 33236736 33236736 C G KIAA1522 Silent p.T652T 0.44 TCGA-UT-A88G-01 21 30380733 30380733 C A RWDD2B Missense_Mutation p.V93L 0.52 tolerated(0.33) benign(0.002) TCGA-UT-A88G-01 21 32015289 32015289 T C KRTAP20-3 Missense_Mutation p.F28L 0.48 tolerated_low_confidence(0.45) unknown(0) TCGA-UT-A88G-01 22 42354525 42354525 G A LINC00634 RNA 0.57 TCGA-UT-A88G-01 2 179547935 179547935 T C TTN Intron 0.43 TCGA-UT-A88G-01 3 170078130 170078140 TCCAGACAAAT - SKIL Frame_Shift_Del p.Q5Lfs*8 0.29 TCGA-UT-A88G-01 3 48587556 48587556 G C PFKFB4 Missense_Mutation p.T70S 0.45 possibly_damaging(0.595) TCGA-UT-A88G-01 3 49698442 49698442 G A BSN Missense_Mutation p.R3055H 0.52 unknown(0) TCGA-UT-A88G-01 3 57311867 57311867 C G ASB14 Missense_Mutation p.V505L 0.42 deleterious(0) possibly_damaging(0.696) TCGA-UT-A88G-01 4 72620143 72620143 G A GC Missense_Mutation p.T435I 0.89 tolerated(0.58) possibly_damaging(0.89) TCGA-UT-A88G-01 6 136878789 136878789 T - MAP3K5 3'UTR 0.51 TCGA-UT-A88G-01 6 31828265 31828265 G A NEU1 Missense_Mutation p.P250L 0.84 deleterious(0) probably_damaging(0.967) TCGA-UT-A88G-01 7 104807823 104807823 C T SRPK2 Splice_Site p.X172_splice 0.16 TCGA-UT-A88G-01 7 128829289 128829289 G A SMO Silent p.Q99Q 0.41 TCGA-UT-A88G-01 7 142919616 142919616 T C TAS2R40 Missense_Mutation p.S149P 0.40 deleterious(0) probably_damaging(1) TCGA-UT-A88G-01 7 87407191 87407191 A G RUNDC3B Silent p.Q309Q 0.44 TCGA-UT-A88G-01 8 56864592 56864592 T G LYN Missense_Mutation p.I185M 0.40 deleterious(0) probably_damaging(1) TCGA-UT-A88G-01 X 115304082 115304082 C T AGTR2 Silent p.D183D 0.42 TCGA-UT-A97Y-01 10 114059319 114059319 C T TECTB Missense_Mutation p.R302W 0.15 deleterious(0) benign(0.386) TCGA-UT-A97Y-01 11 4674593 4674593 C T OR51E1 Silent p.A279A 0.09 TCGA-UT-A97Y-01 12 86373847 86373847 A G MGAT4C Silent p.Y219Y 0.14 TCGA-UT-A97Y-01 16 2134301 2134301 G A TSC2 Missense_Mutation p.E1360K 0.08 tolerated_low_confidence(0.06) benign(0.158) TCGA-UT-A97Y-01 16 25186355 25186355 G T LCMT1 Missense_Mutation p.G328W 0.12 deleterious(0) probably_damaging(0.995) TCGA-UT-A97Y-01 17 42475308 42475308 G C GPATCH8 Missense_Mutation p.I1379M 0.07 deleterious(0.05) unknown(0) TCGA-UT-A97Y-01 17 5342384 5342384 G A C1QBP Silent p.L4L 0.20 TCGA-UT-A97Y-01 17 72436345 72436345 C T GPRC5C Silent p.L189L 0.07 TCGA-UT-A97Y-01 18 31318813 31318813 G T ASXL3 Missense_Mutation p.S482I 0.12 benign(0.086) TCGA-UT-A97Y-01 18 657887 657887 G A TYMS Missense_Mutation p.D49N 0.09 tolerated(0.07) possibly_damaging(0.663) TCGA-UT-A97Y-01 19 18344297 18344297 G A PDE4C Intron 0.10 TCGA-UT-A97Y-01 19 51917675 51917675 C T SIGLEC10 Splice_Site p.X570_splice 0.09 TCGA-UT-A97Y-01 1 197611946 197611946 A G DENND1B Silent p.N189N 0.08 TCGA-UT-A97Y-01 1 211751358 211751358 G A SLC30A1 Silent p.S199S 0.11 TCGA-UT-A97Y-01 1 22183817 22183817 G A HSPG2 Silent p.P1785P 0.12 TCGA-UT-A97Y-01 1 29630430 29630430 C T PTPRU Missense_Mutation p.P857L 0.18 tolerated(0.42) benign(0.15) TCGA-UT-A97Y-01 1 47607827 47607827 C A CYP4A22 Silent p.R144R 0.07 TCGA-UT-A97Y-01 20 17968897 17968897 G T MGME1 Missense_Mutation p.A274S 0.13 tolerated(0.05) probably_damaging(1) TCGA-UT-A97Y-01 20 49575877 49575877 C G MOCS3 Silent p.A166A 0.18 TCGA-UT-A97Y-01 20 50241876 50241876 C G ATP9A Missense_Mutation p.S624T 0.07 tolerated(0.09) benign(0.304) TCGA-UT-A97Y-01 22 30054252 30054252 G - NF2 Frame_Shift_Del 0.10 TCGA-UT-A97Y-01 2 24239089 24239089 C G MFSD2B Missense_Mutation p.P96A 0.22 deleterious(0) probably_damaging(0.973) TCGA-UT-A97Y-01 3 14724400 14724400 G A C3orf20 Silent p.V60V 0.10 TCGA-UT-A97Y-01 3 169854361 169854361 C T PHC3 Silent p.L255L 0.08 TCGA-UT-A97Y-01 5 132150525 132150525 G A SOWAHA Silent p.L404L 0.10 TCGA-UT-A97Y-01 5 161302627 161302627 T G GABRA1 Missense_Mutation p.C180G 0.04 deleterious(0.01) benign(0.007) TCGA-UT-A97Y-01 5 96098098 96098098 G T ERAP1 3'UTR 0.07 TCGA-UT-A97Y-01 6 26235055 26235055 G A HIST1H1D Missense_Mutation p.A36V 0.11 tolerated(0.22) unknown(0) TCGA-UT-A97Y-01 6 28134959 28134959 G A ZNF192P1 RNA 0.15 TCGA-UT-A97Y-01 6 28359472 28359472 C A ZSCAN12 Missense_Mutation p.V199F 0.14 deleterious(0.04) possibly_damaging(0.448) TCGA-UT-A97Y-01 6 42232494 42232494 T A TRERF1 Missense_Mutation p.N528I 0.11 deleterious(0) possibly_damaging(0.904) TCGA-UT-A97Y-01 6 7565714 7565714 C T DSP Silent p.D300D 0.10 TCGA-UT-A97Y-01 8 144379002 144379002 C T ZNF696 3'UTR 0.11 TCGA-UT-A97Y-01 8 22108078 22108078 T A POLR3D 3'UTR 0.12 TCGA-UT-A97Y-01 9 134497351 134497351 C T RAPGEF1 Silent p.S580S 0.14 TCGA-UT-A97Y-01 X 128880306 128880306 C G XPNPEP2 Silent p.L131L 0.10 TCGA-UT-A97Y-01 X 133927883 133927883 G A FAM122B Missense_Mutation p.R47W 0.10 deleterious(0) probably_damaging(0.973) TCGA-UT-A97Y-01 X 1561211 1561211 C A ASMTL Splice_Site p.X32_splice 0.08 TCGA-UT-A97Y-01 X 41082509 41082509 C G USP9X Missense_Mutation p.P2202R 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-XT-AASU-01 10 135076655 135076655 C T ADAM8 3'UTR 0.14 TCGA-XT-AASU-01 11 118952242 118952242 T C VPS11 Missense_Mutation p.L911P 0.07 deleterious(0.02) probably_damaging(0.971) TCGA-XT-AASU-01 11 66241484 66241484 C G PELI3 Intron 0.17 TCGA-XT-AASU-01 11 73620501 73620501 A T PAAF1 Missense_Mutation p.D197V 0.12 deleterious(0) probably_damaging(0.999) TCGA-XT-AASU-01 12 108169308 108169308 G A ASCL4 Missense_Mutation p.D106N 0.15 deleterious(0.01) possibly_damaging(0.466) TCGA-XT-AASU-01 12 109577375 109577375 G A ACACB Silent p.G55G 0.05 TCGA-XT-AASU-01 12 13243497 13243497 A G GSG1 Missense_Mutation p.S102P 0.19 tolerated(0.09) possibly_damaging(0.886) TCGA-XT-AASU-01 13 113826166 113826166 G T PROZ Missense_Mutation p.R339L 0.15 tolerated(1) benign(0) TCGA-XT-AASU-01 14 24808444 24808444 T C RIPK3 Missense_Mutation p.N83S 0.16 tolerated(0.09) benign(0.033) TCGA-XT-AASU-01 14 35872065 35872065 C T NFKBIA Missense_Mutation p.G183D 0.22 deleterious(0) probably_damaging(1) TCGA-XT-AASU-01 14 51411203 51411203 G C PYGL 5'UTR 0.15 TCGA-XT-AASU-01 14 75936253 75936253 C T JDP2 3'UTR 0.25 TCGA-XT-AASU-01 15 41730611 41730611 G A RTF1 Silent p.T97T 0.21 TCGA-XT-AASU-01 15 45879512 45879512 T - BLOC1S6 5'UTR 0.17 TCGA-XT-AASU-01 15 75093198 75093198 C T CSK Silent p.V219V 0.21 TCGA-XT-AASU-01 15 91434372 91434372 C T FES Missense_Mutation p.S494L 0.20 deleterious(0) probably_damaging(1) TCGA-XT-AASU-01 16 84801847 84801848 - T USP10 Frame_Shift_Ins p.T630Hfs*39 0.19 TCGA-XT-AASU-01 17 36666587 36666587 G A ARHGAP23 Silent p.V1285V 0.15 TCGA-XT-AASU-01 17 45206799 45206799 A C CDC27 Missense_Mutation p.F713C 0.20 deleterious(0) probably_damaging(1) TCGA-XT-AASU-01 17 4841639 4841639 T C SLC25A11 Missense_Mutation p.D211G 0.08 tolerated(0.38) benign(0.002) TCGA-XT-AASU-01 17 7415244 7415244 A G POLR2A Missense_Mutation p.T1406A 0.04 probably_damaging(0.973) TCGA-XT-AASU-01 18 44771290 44771290 C G SKOR2 Missense_Mutation p.R914T 0.29 unknown(0) TCGA-XT-AASU-01 18 77659148 77659148 G A KCNG2 Missense_Mutation p.A245T 0.14 tolerated(0.4) benign(0.283) TCGA-XT-AASU-01 19 10428934 10428934 C A RAVER1 Missense_Mutation p.A671S 0.11 tolerated(0.11) benign(0.123) TCGA-XT-AASU-01 19 17631971 17631971 C T PGLS 3'UTR 0.33 TCGA-XT-AASU-01 19 37644177 37644177 A G ZNF585A Silent p.H153H 0.14 TCGA-XT-AASU-01 19 49535283 49535283 C A CGB2 5'UTR 0.17 TCGA-XT-AASU-01 19 51136046 51136046 C T SYT3 Silent p.S57S 0.14 TCGA-XT-AASU-01 19 53576649 53576649 G T ZNF160 Intron 0.14 TCGA-XT-AASU-01 1 101005070 101005070 C T GPR88 Missense_Mutation p.P183L 0.17 tolerated(0.34) probably_damaging(0.975) TCGA-XT-AASU-01 1 156702804 156702804 G T RRNAD1 Missense_Mutation p.G153C 0.18 deleterious(0.01) possibly_damaging(0.759) TCGA-XT-AASU-01 1 232564295 232564295 C T SIPA1L2 Missense_Mutation p.M1424I 0.10 tolerated(0.25) benign(0.001) TCGA-XT-AASU-01 1 37291393 37291393 G A GRIK3 Missense_Mutation p.T522I 0.19 deleterious(0) probably_damaging(0.988) TCGA-XT-AASU-01 2 27360224 27360224 C T C2orf53 Missense_Mutation p.G325D 0.22 tolerated(0.06) probably_damaging(0.913) TCGA-XT-AASU-01 3 129325141 129325141 G A PLXND1 Silent p.C114C 0.23 TCGA-XT-AASU-01 3 142274833 142274833 T C ATR Missense_Mutation p.R743G 0.09 tolerated(0.47) benign(0.003) TCGA-XT-AASU-01 3 52436846 52436847 - G BAP1 Frame_Shift_Ins p.N645Kfs*3 0.16 TCGA-XT-AASU-01 3 89499424 89499424 G T EPHA3 Missense_Mutation p.R865M 0.14 deleterious(0) probably_damaging(0.998) TCGA-XT-AASU-01 4 114277914 114277914 G A ANK2 Missense_Mutation p.V2714I 0.17 benign(0.207) TCGA-XT-AASU-01 4 114278467 114278467 C G ANK2 Missense_Mutation p.T2898S 0.17 benign(0.096) TCGA-XT-AASU-01 4 123814171 123814171 C A NUDT6 Missense_Mutation p.A255S 0.19 tolerated(0.08) possibly_damaging(0.491) TCGA-XT-AASU-01 4 147863759 147863759 T C TTC29 Intron 0.10 TCGA-XT-AASU-01 4 73013015 73013015 C G NPFFR2 Missense_Mutation p.A352G 0.12 tolerated(0.16) possibly_damaging(0.507) TCGA-XT-AASU-01 5 11903975 11903975 G A CTNND2 5'UTR 0.20 TCGA-XT-AASU-01 5 2755475 2755475 C T C5orf38 3'UTR 0.14 TCGA-XT-AASU-01 6 114292166 114292166 G A HDAC2 5'UTR 0.19 TCGA-XT-AASU-01 6 18139194 18139194 C G TPMT Missense_Mutation p.C165S 0.32 tolerated(0.1) benign(0) TCGA-XT-AASU-01 6 29342534 29342534 G A OR12D3 Silent p.Y177Y 0.15 TCGA-XT-AASU-01 6 30862391 30862391 G A DDR1 Missense_Mutation p.E486K 0.23 tolerated(0.34) benign(0.197) TCGA-XT-AASU-01 6 33385399 33385399 C T CUTA Missense_Mutation p.R58Q 0.14 deleterious(0.02) probably_damaging(0.99) TCGA-XT-AASU-01 7 38725334 38725334 T A FAM183B Missense_Mutation p.E91V 0.07 deleterious(0.01) probably_damaging(0.981) TCGA-XT-AASU-01 7 38725335 38725335 C A FAM183B Nonsense_Mutation p.E91* 0.07 TCGA-XT-AASU-01 7 38725337 38725337 T C FAM183B Missense_Mutation p.Q90R 0.07 deleterious(0) benign(0.237) TCGA-XT-AASU-01 8 134251111 134251111 G A NDRG1 3'UTR 0.30 TCGA-XT-AASU-01 8 22880297 22880297 C G TNFRSF10B Missense_Mutation p.D404H 0.13 deleterious(0.01) probably_damaging(0.989) TCGA-XT-AASU-01 8 27922200 27922200 T C NUGGC Missense_Mutation p.R254G 0.05 tolerated(0.39) benign(0.006) TCGA-XT-AASU-01 8 66617000 66617000 T C MTFR1 Missense_Mutation p.I118T 0.22 tolerated(0.44) benign(0.005) TCGA-XT-AASU-01 8 79627562 79627562 A G ZC2HC1A Missense_Mutation p.R271G 0.11 tolerated(0.05) benign(0.021) TCGA-XT-AASU-01 8 88296976 88296976 C T CNBD1 Missense_Mutation p.S281L 0.31 deleterious(0) possibly_damaging(0.536) TCGA-XT-AASU-01 9 14776061 14776061 T C FREM1 Missense_Mutation p.D1528G 0.18 deleterious(0) benign(0.066) TCGA-XT-AASU-01 9 32552490 32552490 G C TOPORS 5'UTR 0.16 TCGA-XT-AASU-01 9 34997325 34997325 C T DNAJB5 3'UTR 0.15 TCGA-XT-AASU-01 9 35043750 35043750 G A C9orf131 Missense_Mutation p.R375K 0.19 tolerated(0.7) benign(0.003) TCGA-XT-AASU-01 9 85881935 85881935 C T FRMD3 Intron 0.19 TCGA-YS-A95B-01 10 135015057 135015057 C A KNDC1 Silent p.P1014P 0.08 TCGA-YS-A95B-01 10 89717711 89717711 C T PTEN Missense_Mutation p.P246S 0.35 tolerated(0.18) benign(0.06) TCGA-YS-A95B-01 11 102826378 102826378 G T MMP13 Silent p.A19A 0.19 TCGA-YS-A95B-01 13 113714946 113714946 C A MCF2L Missense_Mutation p.R137S 0.34 deleterious(0) probably_damaging(0.91) TCGA-YS-A95B-01 14 51219329 51219329 G T NIN Nonsense_Mutation p.C1619* 0.58 TCGA-YS-A95B-01 18 2784506 2784506 G T SMCHD1 Missense_Mutation p.S1869I 0.29 deleterious(0) probably_damaging(0.998) TCGA-YS-A95B-01 18 47318601 47318601 G A ACAA2 Missense_Mutation p.P225L 0.38 deleterious(0.05) probably_damaging(0.973) TCGA-YS-A95B-01 19 13934308 13934308 G A ZSWIM4 Missense_Mutation p.A620T 0.23 deleterious(0) unknown(0) TCGA-YS-A95B-01 19 44096901 44096901 C G IRGQ Silent p.G383G 0.04 TCGA-YS-A95B-01 19 8563782 8563782 C A PRAM1 Missense_Mutation p.V304L 0.37 deleterious(0.03) possibly_damaging(0.475) TCGA-YS-A95B-01 1 10753960 10753960 G A CASZ1 5'UTR 0.20 TCGA-YS-A95B-01 1 26496450 26496450 T G ZNF593 5'UTR 0.20 TCGA-YS-A95B-01 21 46644473 46644473 A G ADARB1 3'UTR 0.65 TCGA-YS-A95B-01 2 111878574 111878574 C T BCL2L11 5'UTR 0.33 TCGA-YS-A95B-01 2 170735083 170735083 A C UBR3 Missense_Mutation p.E346A 0.40 deleterious(0.03) benign(0.112) TCGA-YS-A95B-01 2 48725838 48725838 T C PPP1R21 Silent p.A633A 0.46 TCGA-YS-A95B-01 3 154055898 154055898 T A GPR149 Missense_Mutation p.S596C 0.33 deleterious(0) probably_damaging(0.999) TCGA-YS-A95B-01 4 2965818 2965818 G C GRK4 Silent p.V7V 0.37 TCGA-YS-A95B-01 4 66189926 66189926 C T EPHA5 Missense_Mutation p.R1007Q 0.39 deleterious(0.01) benign(0.2) TCGA-YS-A95B-01 5 140750029 140750029 C T PCDHGB3 Missense_Mutation p.S23F 0.43 tolerated(0.29) possibly_damaging(0.594) TCGA-YS-A95B-01 5 55206391 55206391 C T IL31RA Silent p.Y511Y 0.10 TCGA-YS-A95B-01 6 1390647 1390647 C G FOXF2 Missense_Mutation p.N155K 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-YS-A95B-01 6 42986692 42986692 C T KLHDC3 Silent p.V304V 0.35 TCGA-YS-A95B-01 6 42986695 42986695 C T KLHDC3 Silent p.L305L 0.37 TCGA-YS-A95B-01 8 144651713 144651713 A T MROH6 Silent p.G458G 0.36 TCGA-YS-A95B-01 9 136291428 136291428 G A ADAMTS13 Missense_Mutation p.D217N 0.30 deleterious(0) probably_damaging(1) TCGA-YS-A95B-01 X 79279661 79279661 T C TBX22 Silent p.Y152Y 0.38 TCGA-YS-A95C-01 12 119772950 119772950 G A CCDC60 5'UTR 0.31 TCGA-YS-A95C-01 12 52647469 52647469 G A KRT7 3'Flank 0.36 TCGA-YS-A95C-01 13 102359178 102359178 G A ITGBL1 Missense_Mutation p.R402Q 0.31 tolerated(0.09) benign(0.009) TCGA-YS-A95C-01 13 39587827 39587827 G A PROSER1 Missense_Mutation p.P521L 0.23 deleterious_low_confidence(0) benign(0.025) TCGA-YS-A95C-01 14 20942941 20942941 C T PNP Missense_Mutation p.P99S 0.28 deleterious(0) probably_damaging(0.993) TCGA-YS-A95C-01 15 24922293 24922293 C G NPAP1 Missense_Mutation p.P427A 0.05 tolerated(0.36) benign(0.02) TCGA-YS-A95C-01 16 30980750 30980750 G A SETD1A Silent p.G965G 0.25 TCGA-YS-A95C-01 16 64984723 64984723 C T CDH11 Missense_Mutation p.G614D 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-YS-A95C-01 17 19266017 19266025 CGAGTGCGC - B9D1 5'UTR 0.38 TCGA-YS-A95C-01 17 47486424 47486424 T A PHB Missense_Mutation p.I164F 0.47 deleterious(0.01) possibly_damaging(0.724) TCGA-YS-A95C-01 1 108703889 108703889 A G SLC25A24 Missense_Mutation p.V142A 0.32 deleterious(0) possibly_damaging(0.692) TCGA-YS-A95C-01 1 166039981 166039981 C A FAM78B Missense_Mutation p.D95Y 0.33 deleterious(0.01) possibly_damaging(0.568) TCGA-YS-A95C-01 20 2774963 2774963 G A CPXM1 Missense_Mutation p.P693L 0.65 deleterious(0.01) possibly_damaging(0.864) TCGA-YS-A95C-01 2 161051950 161051950 C T ITGB6 Missense_Mutation p.G175R 0.28 deleterious(0) probably_damaging(1) TCGA-YS-A95C-01 2 224866572 224866572 G A SERPINE2 Missense_Mutation p.P28S 0.30 tolerated(0.34) benign(0.004) TCGA-YS-A95C-01 2 240985208 240985208 G A OR6B3 Silent p.F94F 0.14 TCGA-YS-A95C-01 3 186965067 186965067 G A MASP1 Intron 0.23 TCGA-YS-A95C-01 3 196236519 196236519 C T SMCO1 Silent p.A24A 0.23 TCGA-YS-A95C-01 3 52440872 52440874 ATG - BAP1 In_Frame_Del p.I210del 0.32 TCGA-YS-A95C-01 3 52443882 52443882 A C BAP1 Missense_Mutation p.W5G 0.17 deleterious(0) probably_damaging(0.982) TCGA-YS-A95C-01 4 67902 67902 G C Z95704.1 3'Flank 0.17 TCGA-YS-A95C-01 5 167987967 167987967 C A PANK3 Intron 0.57 TCGA-YS-A95C-01 5 176721710 176721710 G C NSD1 Missense_Mutation p.Q2447H 0.05 deleterious_low_confidence(0) possibly_damaging(0.794) TCGA-YS-A95C-01 5 180432402 180432402 C A BTNL3 Missense_Mutation p.H311N 0.12 tolerated(0.31) benign(0.167) TCGA-YS-A95C-01 6 133055441 133055441 C T VNN3 Missense_Mutation p.D99N 0.21 tolerated(0.19) benign(0.029) TCGA-YS-A95C-01 6 69348639 69348639 T G BAI3 Silent p.A24A 0.29 TCGA-YS-A95C-01 8 37823916 37823916 G T ADRB3 Silent p.T24T 0.33 TCGA-YS-A95C-01 8 48744470 48744470 C T PRKDC Missense_Mutation p.D2723N 0.33 benign(0.013) TCGA-YS-A95C-01 9 136245913 136245913 T C C9orf96 Missense_Mutation p.Y32H 0.26 tolerated(0.19) possibly_damaging(0.611) TCGA-YS-A95C-01 X 13754715 13754715 T C OFD1 Missense_Mutation p.L77S 0.59 deleterious(0) probably_damaging(0.985) TCGA-YS-AA4M-01 10 51829472 51829472 G T FAM21A Splice_Site p.X97_splice 0.09 TCGA-YS-AA4M-01 11 58979445 58979445 G T MPEG1 Missense_Mutation p.N298K 0.12 deleterious(0) probably_damaging(0.938) TCGA-YS-AA4M-01 12 7173264 7173264 T C C1S Silent p.Y287Y 0.07 TCGA-YS-AA4M-01 16 23226483 23226483 A C SCNN1G Missense_Mutation p.E548A 0.10 deleterious(0) probably_damaging(1) TCGA-YS-AA4M-01 16 50109559 50109559 G T HEATR3 Nonsense_Mutation p.E234* 0.12 TCGA-YS-AA4M-01 17 15555027 15555027 G C TRIM16 5'UTR 0.14 TCGA-YS-AA4M-01 19 18980877 18980877 C T GDF1 Silent p.R80R 0.12 TCGA-YS-AA4M-01 19 36229433 36229433 A G KMT2B Missense_Mutation p.K2708R 0.07 benign(0.062) TCGA-YS-AA4M-01 19 47570988 47570988 T A ZC3H4 Missense_Mutation p.D846V 0.05 unknown(0) TCGA-YS-AA4M-01 19 51670955 51670955 C T CTD-3187F8.14 Intron 0.06 TCGA-YS-AA4M-01 1 207648372 207648372 C T CR2 Missense_Mutation p.P843S 0.09 tolerated(0.07) benign(0.297) TCGA-YS-AA4M-01 1 45278685 45278685 C T BTBD19 Silent p.G144G 0.08 TCGA-YS-AA4M-01 22 30000057 30000057 G - NF2 Frame_Shift_Del p.V24* 0.14 TCGA-YS-AA4M-01 22 42209343 42209356 ACTTTGACCACAAC G CCDC134 Frame_Shift_Del p.Y129Cfs*32 0.12 TCGA-YS-AA4M-01 2 103121873 103121873 T A SLC9A4 Missense_Mutation p.W381R 0.13 deleterious(0) probably_damaging(0.966) TCGA-YS-AA4M-01 2 105892050 105892050 G A TGFBRAP1 Silent p.A544A 0.07 TCGA-YS-AA4M-01 2 1652563 1652563 G A PXDN Missense_Mutation p.R997C 0.09 deleterious(0) probably_damaging(1) TCGA-YS-AA4M-01 2 201342465 201342465 G A SPATS2L Missense_Mutation p.G463E 0.10 tolerated(0.27) benign(0.022) TCGA-YS-AA4M-01 2 201886811 201886811 C T FAM126B Intron 0.09 TCGA-YS-AA4M-01 2 26915914 26915914 C A KCNK3 Silent p.G57G 0.08 TCGA-YS-AA4M-01 5 72374089 72374089 G A FCHO2 Missense_Mutation p.E644K 0.43 deleterious(0) possibly_damaging(0.906) TCGA-YS-AA4M-01 6 26156658 26156658 C T HIST1H1E Missense_Mutation p.P14S 0.18 tolerated(0.12) possibly_damaging(0.857) TCGA-YS-AA4M-01 7 1131491 1131491 G A GPER1 Missense_Mutation p.A43T 0.05 tolerated(0.3) benign(0.034) TCGA-YS-AA4M-01 7 141478975 141478975 G A TAS2R4 Missense_Mutation p.M229I 0.08 tolerated(0.44) benign(0.078) TCGA-YS-AA4M-01 8 94146987 94146987 C T C8orf87 Missense_Mutation p.D31N 0.12 deleterious_low_confidence(0) possibly_damaging(0.737) TCGA-YS-AA4M-01 9 107331777 107331777 C A OR13C8 Missense_Mutation p.T110K 0.09 deleterious(0) probably_damaging(0.999) TCGA-YS-AA4M-01 9 111679865 111679865 C G IKBKAP Missense_Mutation p.G276R 0.04 deleterious(0) probably_damaging(1) TCGA-ZN-A9VO-01 10 46999661 46999661 C T GPRIN2 Silent p.L261L 0.16 TCGA-ZN-A9VO-01 10 72015444 72015444 G C NPFFR1 Missense_Mutation p.H188D 0.45 deleterious(0.04) probably_damaging(0.983) TCGA-ZN-A9VO-01 11 65838073 65838073 A C PACS1 Missense_Mutation p.Q39P 0.05 tolerated_low_confidence(0.13) unknown(0) TCGA-ZN-A9VO-01 11 76829351 76829351 G A CAPN5 Missense_Mutation p.G374S 0.30 tolerated(1) benign(0.001) TCGA-ZN-A9VO-01 12 132636631 132636631 C T NOC4L Silent p.A440A 0.28 TCGA-ZN-A9VO-01 12 133084745 133084745 A G FBRSL1 Missense_Mutation p.M100V 0.31 tolerated(0.17) probably_damaging(0.915) TCGA-ZN-A9VO-01 12 57345813 57345813 T G RDH16 Nonstop_Mutation p.*318Cext*2 0.19 TCGA-ZN-A9VO-01 12 78571071 78571071 A C NAV3 Missense_Mutation p.K1759Q 0.14 deleterious(0.04) possibly_damaging(0.738) TCGA-ZN-A9VO-01 13 33017011 33017011 G C N4BP2L2 Missense_Mutation p.P555A 0.29 tolerated(0.36) possibly_damaging(0.684) TCGA-ZN-A9VO-01 14 31364119 31364119 C A COCH 3'Flank 0.32 TCGA-ZN-A9VO-01 14 31597130 31597130 A G HECTD1 Silent p.S1614S 0.24 TCGA-ZN-A9VO-01 17 78120776 78120776 G A EIF4A3 5'UTR 0.34 TCGA-ZN-A9VO-01 18 18622574 18622574 C T ROCK1 Missense_Mutation p.E258K 0.29 deleterious(0) probably_damaging(0.999) TCGA-ZN-A9VO-01 18 61232795 61232795 T A SERPINB12 Missense_Mutation p.F255I 0.39 tolerated(0.84) benign(0.062) TCGA-ZN-A9VO-01 18 64211262 64211262 G C CDH19 Nonsense_Mutation p.S387* 0.29 TCGA-ZN-A9VO-01 19 1004890 1004890 G A GRIN3B Missense_Mutation p.A464T 0.35 tolerated(0.11) benign(0.01) TCGA-ZN-A9VO-01 19 57839700 57839700 G A ZNF543 Silent p.K290K 0.25 TCGA-ZN-A9VO-01 19 58268024 58268024 A G ZNF776 3'UTR 0.23 TCGA-ZN-A9VO-01 1 116675974 116675974 C T MAB21L3 Silent p.I359I 0.27 TCGA-ZN-A9VO-01 1 149859152 149859152 C G HIST2H2AB Missense_Mutation p.Q105H 0.04 deleterious_low_confidence(0.01) probably_damaging(0.96) TCGA-ZN-A9VO-01 1 2340216 2340216 C T PEX10 Missense_Mutation p.R92H 0.08 deleterious(0) probably_damaging(1) TCGA-ZN-A9VO-01 1 6529196 6529196 C T PLEKHG5 Missense_Mutation p.E798K 0.34 deleterious(0.03) probably_damaging(0.953) TCGA-ZN-A9VO-01 20 61957043 61957043 C T COL20A1 Silent p.I1124I 0.29 TCGA-ZN-A9VO-01 22 30067824 30067824 C T NF2 Nonsense_Mutation p.Q337* 0.35 TCGA-ZN-A9VO-01 2 121981915 121981915 G A TFCP2L1 3'UTR 0.34 TCGA-ZN-A9VO-01 2 159651927 159651927 G A DAPL1 Missense_Mutation p.G15R 0.28 tolerated(0.12) benign(0.13) TCGA-ZN-A9VO-01 4 26322618 26322618 G C RBPJ Intron 0.23 TCGA-ZN-A9VO-01 5 68903015 68903015 T G RP11-848G14.2 RNA 0.35 TCGA-ZN-A9VO-01 5 82948532 82948532 C A HAPLN1 Missense_Mutation p.G71V 0.28 tolerated(0.14) benign(0.027) TCGA-ZN-A9VO-01 6 170190396 170190396 C T LINC00242 RNA 0.31 TCGA-ZN-A9VO-01 6 46657850 46657850 A G TDRD6 Missense_Mutation p.Q662R 0.06 deleterious(0.04) benign(0.41) TCGA-ZN-A9VO-01 7 107398743 107398743 G A CBLL1 Missense_Mutation p.R199H 0.31 tolerated(0.47) possibly_damaging(0.629) TCGA-ZN-A9VO-01 7 150912770 150912770 T G ABCF2 Missense_Mutation p.M484L 0.12 tolerated(0.5) benign(0.011) TCGA-ZN-A9VO-01 8 131172124 131172124 T A ASAP1 Silent p.L332L 0.08 TCGA-ZN-A9VO-01 8 68189549 68189549 C T ARFGEF1 Missense_Mutation p.D391N 0.48 tolerated(0.08) possibly_damaging(0.501) TCGA-ZN-A9VO-01 9 98208673 98208673 C G PTCH1 Intron 0.42 TCGA-ZN-A9VP-01 10 63851679 63851679 C - ARID5B Frame_Shift_Del p.H821Ifs*61 0.31 TCGA-ZN-A9VP-01 11 60229709 60229709 G A MS4A1 5'UTR 0.27 TCGA-ZN-A9VP-01 12 102091873 102091873 G A CHPT1 Silent p.T78T 0.57 TCGA-ZN-A9VP-01 12 129180622 129180622 C T TMEM132C Nonsense_Mutation p.R635* 0.30 TCGA-ZN-A9VP-01 14 20388812 20388812 G A OR4K5 Missense_Mutation p.G16E 0.26 deleterious(0.01) probably_damaging(1) TCGA-ZN-A9VP-01 16 309517 309517 G A ITFG3 Missense_Mutation p.G102R 0.35 tolerated(0.76) benign(0.003) TCGA-ZN-A9VP-01 17 27381689 27381689 G T PIPOX Nonsense_Mutation p.E263* 0.38 TCGA-ZN-A9VP-01 17 72436882 72436882 G A GPRC5C Missense_Mutation p.G368S 0.29 tolerated(0.17) probably_damaging(0.992) TCGA-ZN-A9VP-01 17 7578416 7578416 C A TP53 Missense_Mutation p.V172F 0.49 deleterious(0) probably_damaging(0.984) TCGA-ZN-A9VP-01 18 48255599 48255599 G A MAPK4 Missense_Mutation p.R380H 0.31 deleterious_low_confidence(0.01) probably_damaging(0.925) TCGA-ZN-A9VP-01 19 22940998 22940998 G A ZNF99 Silent p.G571G 0.15 TCGA-ZN-A9VP-01 19 33134530 33134530 G A ANKRD27 Missense_Mutation p.A178V 0.66 tolerated(1) possibly_damaging(0.499) TCGA-ZN-A9VP-01 19 54758259 54758259 G A LILRB5 Silent p.S425S 0.38 TCGA-ZN-A9VP-01 19 7975428 7975428 G A MAP2K7 Missense_Mutation p.V180M 0.34 deleterious(0) probably_damaging(0.995) TCGA-ZN-A9VP-01 1 16939933 16939933 C G NBPF1 5'UTR 0.21 TCGA-ZN-A9VP-01 1 19984294 19984294 G C MINOS1-NBL1 3'UTR 0.83 TCGA-ZN-A9VP-01 1 226044667 226044667 C T TMEM63A Silent p.S476S 0.34 TCGA-ZN-A9VP-01 1 23419908 23419908 G A LUZP1 Nonsense_Mutation p.Q283* 0.14 TCGA-ZN-A9VP-01 1 2939081 2939081 G T ACTRT2 Silent p.S277S 0.06 TCGA-ZN-A9VP-01 21 44273831 44273831 C T WDR4 Missense_Mutation p.A275T 0.07 tolerated(0.07) benign(0.016) TCGA-ZN-A9VP-01 21 46642025 46642025 G A ADARB1 Silent p.A713A 0.33 TCGA-ZN-A9VP-01 2 233498538 233498538 C A EFHD1 Missense_Mutation p.P42T 0.84 tolerated(0.52) unknown(0) TCGA-ZN-A9VP-01 2 29296184 29296184 C A C2orf71 Missense_Mutation p.R315M 0.34 deleterious(0) possibly_damaging(0.582) TCGA-ZN-A9VP-01 2 66664985 66664985 T G MEIS1 Silent p.P43P 0.30 TCGA-ZN-A9VP-01 3 46415011 46415011 G A CCR5 Silent p.P206P 0.44 TCGA-ZN-A9VP-01 5 132149744 132149744 C A SOWAHA Missense_Mutation p.T144N 0.32 tolerated(0.29) benign(0.367) TCGA-ZN-A9VP-01 7 112724276 112724276 C T GPR85 Silent p.R167R 0.05 TCGA-ZN-A9VP-01 7 121944678 121944678 C T FEZF1 5'Flank 0.58 TCGA-ZN-A9VP-01 8 23429102 23429102 G A SLC25A37 Missense_Mutation p.A251T 0.23 tolerated(0.21) benign(0.033) TCGA-ZN-A9VP-01 8 8998324 8998324 T A PPP1R3B Nonsense_Mutation p.K280* 0.23 TCGA-ZN-A9VS-01 10 123892206 123892206 G T TACC2 Missense_Mutation p.G1886C 0.28 probably_damaging(0.934) TCGA-ZN-A9VS-01 10 134145066 134145066 G A LRRC27 5'Flank 0.32 TCGA-ZN-A9VS-01 10 17127754 17127754 C A CUBN Missense_Mutation p.R651L 0.09 deleterious(0.03) possibly_damaging(0.642) TCGA-ZN-A9VS-01 10 54074175 54074175 C T DKK1 5'UTR 0.36 TCGA-ZN-A9VS-01 10 98760876 98760876 C A SLIT1 Missense_Mutation p.C1533F 0.15 deleterious(0) probably_damaging(0.997) TCGA-ZN-A9VS-01 11 6638283 6638283 C T TPP1 Missense_Mutation p.V204M 0.30 deleterious(0.01) probably_damaging(0.986) TCGA-ZN-A9VS-01 11 88911421 88911421 T C TYR Silent p.C100C 0.30 TCGA-ZN-A9VS-01 12 12630304 12630304 G A DUSP16 Silent p.V487V 0.28 TCGA-ZN-A9VS-01 12 48577848 48577848 A C C12orf68 5'UTR 0.17 TCGA-ZN-A9VS-01 12 69264018 69264018 T C CPM Missense_Mutation p.Y198C 0.35 deleterious(0) probably_damaging(0.991) TCGA-ZN-A9VS-01 12 8976322 8976322 C T A2ML1 Missense_Mutation p.P85S 0.28 tolerated(0.07) benign(0.146) TCGA-ZN-A9VS-01 14 24546497 24546497 C T CPNE6 Silent p.D478D 0.20 TCGA-ZN-A9VS-01 14 79111726 79111726 G A NRXN3 5'UTR 0.16 TCGA-ZN-A9VS-01 15 50757366 50757366 C T USP8 Missense_Mutation p.P222S 0.39 deleterious(0) probably_damaging(0.998) TCGA-ZN-A9VS-01 16 89882975 89882975 C A FANCA Missense_Mutation p.G17C 0.34 deleterious(0.01) probably_damaging(0.965) TCGA-ZN-A9VS-01 17 59477697 59477697 G T TBX2 Missense_Mutation p.D54Y 0.13 deleterious(0) probably_damaging(0.995) TCGA-ZN-A9VS-01 17 61899489 61899489 C T FTSJ3 Missense_Mutation p.D444N 0.32 deleterious(0.02) probably_damaging(0.985) TCGA-ZN-A9VS-01 19 36330164 36330164 C T NPHS1 Silent p.G1028G 0.18 TCGA-ZN-A9VS-01 19 41807475 41807475 T C HNRNPUL1 Missense_Mutation p.M518T 0.23 deleterious(0) unknown(0) TCGA-ZN-A9VS-01 1 16903848 16903848 T A NBPF1 Missense_Mutation p.K623M 0.11 deleterious(0.03) probably_damaging(0.991) TCGA-ZN-A9VS-01 1 1823093 1823094 - AGAG GNB1 5'Flank 0.52 TCGA-ZN-A9VS-01 1 247695447 247695447 G T OR2C3 Missense_Mutation p.R123S 0.29 deleterious(0) benign(0.199) TCGA-ZN-A9VS-01 1 34677971 34677971 G A C1orf94 Missense_Mutation p.G562E 0.25 deleterious(0) probably_damaging(1) TCGA-ZN-A9VS-01 1 43916551 43916551 G A SZT2 3'UTR 0.32 TCGA-ZN-A9VS-01 20 25264866 25264866 C A PYGB Missense_Mutation p.H583N 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-ZN-A9VS-01 20 5283094 5283094 C T PROKR2 Silent p.E249E 0.31 TCGA-ZN-A9VS-01 21 43702437 43702437 C A ABCG1 Silent p.T214T 0.30 TCGA-ZN-A9VS-01 2 108627248 108627248 C T SLC5A7 Silent p.T558T 0.30 TCGA-ZN-A9VS-01 2 179599086 179599086 C A TTN Missense_Mutation p.K5155N 0.26 TCGA-ZN-A9VS-01 3 102189243 102189243 C T ZPLD1 Silent p.C329C 0.27 TCGA-ZN-A9VS-01 3 129695857 129695857 G T TRH Missense_Mutation p.R176I 0.17 tolerated(0.18) benign(0.234) TCGA-ZN-A9VS-01 3 135870552 135870552 C T MSL2 Missense_Mutation p.G391R 0.31 deleterious(0) probably_damaging(1) TCGA-ZN-A9VS-01 3 19988780 19988780 A C RAB5A 5'UTR 0.18 TCGA-ZN-A9VS-01 3 20042999 20043000 - A PP2D1 Frame_Shift_Ins p.G205Wfs*4 0.28 TCGA-ZN-A9VS-01 3 9475543 9475544 - G SETD5 Frame_Shift_Ins p.A30Gfs*2 0.16 TCGA-ZN-A9VS-01 4 76912107 76912107 A G SDAD1 5'UTR 0.23 TCGA-ZN-A9VS-01 5 115298954 115298954 G A AQPEP Missense_Mutation p.E214K 0.33 tolerated(0.21) benign(0.01) TCGA-ZN-A9VS-01 5 140044511 140044511 G A WDR55 Missense_Mutation p.C5Y 0.30 deleterious_low_confidence(0.02) benign(0.049) TCGA-ZN-A9VS-01 5 140166226 140166226 C G PCDHA1 Missense_Mutation p.F117L 0.32 deleterious_low_confidence(0.02) possibly_damaging(0.588) TCGA-ZN-A9VS-01 5 140176048 140176048 G A PCDHA2 Missense_Mutation p.G500D 0.29 deleterious_low_confidence(0.04) possibly_damaging(0.632) TCGA-ZN-A9VS-01 5 140515777 140515777 A G PCDHB5 Missense_Mutation p.N254S 0.33 tolerated_low_confidence(0.07) benign(0.22) TCGA-ZN-A9VS-01 6 36287381 36287381 G A C6orf222 Missense_Mutation p.R559C 0.32 deleterious(0) probably_damaging(0.942) TCGA-ZN-A9VS-01 7 154379439 154379439 G A DPP6 Intron 0.22 TCGA-ZN-A9VS-01 8 125463055 125463055 C T TRMT12 5'UTR 0.34 TCGA-ZN-A9VS-01 9 131088144 131088144 G A COQ4 Missense_Mutation p.R129H 0.35 tolerated(0.3) benign(0.104) TCGA-ZN-A9VS-01 9 135771639 135771639 G A TSC1 Missense_Mutation p.H1160Y 0.30 deleterious(0) benign(0.285) TCGA-ZN-A9VS-01 9 19376613 19376613 C T RPS6 Missense_Mutation p.R178H 0.10 tolerated(0.2) benign(0.006) TCGA-ZN-A9VS-01 9 97062172 97062172 C T ZNF169 Missense_Mutation p.A111V 0.11 tolerated(1) benign(0.001) TCGA-ZN-A9VS-01 X 41022080 41022080 A - USP9X Frame_Shift_Del p.S646Vfs*20 0.56 TCGA-ZN-A9VS-01 X 70148831 70148831 G A SLC7A3 Missense_Mutation p.A131V 0.54 tolerated(0.05) possibly_damaging(0.687) TCGA-ZN-A9VS-01 X 92927143 92927143 A G NAP1L3 Silent p.D387D 0.60 TCGA-ZN-A9VU-01 10 112257769 112257769 C T DUSP5 5'UTR 0.33 TCGA-ZN-A9VU-01 10 71968989 71968989 T C PPA1 Missense_Mutation p.K233E 0.35 tolerated(0.13) benign(0.033) TCGA-ZN-A9VU-01 10 98031149 98031149 T C BLNK Missense_Mutation p.K3E 0.28 deleterious(0.04) benign(0.37) TCGA-ZN-A9VU-01 10 98180777 98180777 T A TLL2 Missense_Mutation p.S287C 0.34 deleterious(0) possibly_damaging(0.563) TCGA-ZN-A9VU-01 11 116728978 116728978 C T SIK3 Missense_Mutation p.R962K 0.44 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-ZN-A9VU-01 11 640109 640109 A C DRD4 Missense_Mutation p.Q287P 0.21 tolerated(0.24) unknown(0) TCGA-ZN-A9VU-01 12 124497172 124497172 C T ZNF664 Missense_Mutation p.H161Y 0.24 deleterious(0) probably_damaging(1) TCGA-ZN-A9VU-01 12 30878980 30878980 G C CAPRIN2 Missense_Mutation p.L609V 0.28 deleterious(0.03) possibly_damaging(0.641) TCGA-ZN-A9VU-01 12 57865476 57865476 G A GLI1 Missense_Mutation p.A985T 0.40 tolerated_low_confidence(0.44) benign(0.433) TCGA-ZN-A9VU-01 12 95604011 95604011 C T FGD6 Missense_Mutation p.C350Y 0.28 tolerated_low_confidence(0.88) benign(0.009) TCGA-ZN-A9VU-01 13 24876804 24876804 A - SPATA13 Frame_Shift_Del p.M1243Cfs*103 0.37 TCGA-ZN-A9VU-01 14 33004827 33004827 T G AKAP6 Missense_Mutation p.L131R 0.28 deleterious(0) probably_damaging(0.999) TCGA-ZN-A9VU-01 15 23686139 23686139 C T GOLGA6L2 Missense_Mutation p.E495K 0.21 unknown(0) TCGA-ZN-A9VU-01 16 19452013 19452013 C T TMC5 Missense_Mutation p.P218L 0.07 deleterious_low_confidence(0.03) benign(0.065) TCGA-ZN-A9VU-01 16 22448598 22448598 T C RRN3P3 RNA 0.10 TCGA-ZN-A9VU-01 16 22448619 22448619 C T RRN3P3 RNA 0.12 TCGA-ZN-A9VU-01 16 28621253 28621253 T C SULT1A1 Intron 0.29 TCGA-ZN-A9VU-01 16 599676 599676 C T CAPN15 Missense_Mutation p.S635F 0.27 deleterious(0.01) probably_damaging(1) TCGA-ZN-A9VU-01 18 19076620 19076620 C A GREB1L Silent p.R1118R 0.36 TCGA-ZN-A9VU-01 19 43433760 43433760 C A PSG7 Missense_Mutation p.W181C 0.29 deleterious(0) possibly_damaging(0.873) TCGA-ZN-A9VU-01 1 114449714 114449714 G T DCLRE1B Missense_Mutation p.D96Y 0.25 deleterious(0) probably_damaging(1) TCGA-ZN-A9VU-01 1 158606442 158606442 G A SPTA1 Missense_Mutation p.P1767S 0.32 deleterious(0.02) benign(0.185) TCGA-ZN-A9VU-01 1 160390952 160390952 C T VANGL2 Nonsense_Mutation p.R350* 0.33 TCGA-ZN-A9VU-01 1 179314178 179314178 C A SOAT1 Missense_Mutation p.L362M 0.27 tolerated(0.21) possibly_damaging(0.513) TCGA-ZN-A9VU-01 1 223940640 223940640 G C CAPN2 Missense_Mutation p.G373R 0.31 deleterious(0) probably_damaging(0.989) TCGA-ZN-A9VU-01 1 23637101 23637101 G C HNRNPR Missense_Mutation p.S586C 0.25 deleterious_low_confidence(0) unknown(0) TCGA-ZN-A9VU-01 1 26110353 26110353 A G MAN1C1 3'UTR 0.27 TCGA-ZN-A9VU-01 1 39951426 39951426 C A MACF1 Missense_Mutation p.T5418N 0.21 benign(0.061) TCGA-ZN-A9VU-01 22 17590434 17590434 C T IL17RA Silent p.L775L 0.43 TCGA-ZN-A9VU-01 2 132056889 132056889 G C FAR2P4 RNA 0.24 TCGA-ZN-A9VU-01 2 143712431 143712431 T A KYNU Missense_Mutation p.H142Q 0.24 deleterious(0) probably_damaging(0.963) TCGA-ZN-A9VU-01 2 160205619 160205619 T G BAZ2B Missense_Mutation p.E1679A 0.33 benign(0.392) TCGA-ZN-A9VU-01 2 31147115 31147115 G A GALNT14 Missense_Mutation p.S422F 0.27 deleterious(0.02) possibly_damaging(0.861) TCGA-ZN-A9VU-01 3 101540821 101540821 G A NXPE3 3'UTR 0.25 TCGA-ZN-A9VU-01 3 52436297 52436305 GCAGTCCTC - BAP1 Missense_Mutation 0.53 TCGA-ZN-A9VU-01 3 52544378 52544378 C T STAB1 Missense_Mutation p.P881L 0.40 tolerated(0.26) possibly_damaging(0.652) TCGA-ZN-A9VU-01 3 52584649 52584649 C - PBRM1 Frame_Shift_Del p.G1455Efs*34 0.32 TCGA-ZN-A9VU-01 5 176318093 176318093 G A HK3 Missense_Mutation p.P120L 0.29 tolerated(0.44) benign(0.05) TCGA-ZN-A9VU-01 5 677992 677992 C T TPPP Missense_Mutation p.G62R 0.29 deleterious(0) probably_damaging(1) TCGA-ZN-A9VU-01 6 35392567 35392567 G A PPARD Intron 0.18 TCGA-ZN-A9VU-01 6 405045 405045 G A IRF4 Missense_Mutation p.R376H 0.19 tolerated(0.16) probably_damaging(0.994) TCGA-ZN-A9VU-01 7 23830457 23830457 G A STK31 Silent p.S884S 0.28 TCGA-ZN-A9VU-01 7 72849210 72849210 C A FZD9 Missense_Mutation p.S291R 0.08 tolerated(0.58) possibly_damaging(0.571) TCGA-ZN-A9VU-01 7 89927133 89927133 G T C7orf63 Missense_Mutation p.D616Y 0.32 deleterious(0) probably_damaging(0.971) TCGA-ZN-A9VU-01 8 91804047 91804047 C T NECAB1 5'UTR 0.29 TCGA-ZN-A9VU-01 9 36216307 36216307 G T GNE 3'UTR 0.09 TCGA-ZN-A9VV-01 11 106579365 106579365 C T GUCY1A2 Missense_Mutation p.V653M 0.43 deleterious(0) probably_damaging(0.998) TCGA-ZN-A9VV-01 11 114453480 114453480 C A NXPE4 Silent p.L120L 0.48 TCGA-ZN-A9VV-01 12 53586189 53586189 C G ITGB7 Missense_Mutation p.D694H 0.45 deleterious(0.02) probably_damaging(1) TCGA-ZN-A9VV-01 12 54913071 54913071 C A NCKAP1L Missense_Mutation p.S527Y 0.41 tolerated(1) benign(0.188) TCGA-ZN-A9VV-01 15 89393009 89393009 G A ACAN Intron 0.05 TCGA-ZN-A9VV-01 16 69199248 69199248 T C CIRH1A Missense_Mutation p.F551S 0.40 deleterious(0.03) possibly_damaging(0.717) TCGA-ZN-A9VV-01 16 89877444 89877444 C T FANCA Missense_Mutation p.V107I 0.32 tolerated(0.15) benign(0.097) TCGA-ZN-A9VV-01 17 15554916 15554916 T C RP11-385D13.1 Missense_Mutation p.E3G 0.05 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-ZN-A9VV-01 17 26687839 26687839 G A TMEM199 Missense_Mutation p.G167E 0.06 deleterious(0) probably_damaging(1) TCGA-ZN-A9VV-01 17 44845993 44845993 C A WNT3 Missense_Mutation p.G254V 0.43 deleterious(0) probably_damaging(0.996) TCGA-ZN-A9VV-01 19 12800595 12800595 C T FBXW9 Missense_Mutation p.G376S 0.16 deleterious(0.05) possibly_damaging(0.823) TCGA-ZN-A9VV-01 19 21365892 21365898 TGAAGAA - ZNF431 Frame_Shift_Del p.E263Vfs*16 0.24 TCGA-ZN-A9VV-01 19 52090786 52090786 C A ZNF175 Missense_Mutation p.S401Y 0.44 deleterious(0.01) probably_damaging(0.974) TCGA-ZN-A9VV-01 19 8155033 8155033 G - FBN3 Frame_Shift_Del p.P2045Lfs*41 0.32 TCGA-ZN-A9VV-01 19 8190903 8190903 T C FBN3 Splice_Site p.X869_splice 0.40 TCGA-ZN-A9VV-01 1 12979805 12979805 C A PRAMEF7 Missense_Mutation p.H333N 0.16 benign(0.007) TCGA-ZN-A9VV-01 1 204210898 204210898 T G PLEKHA6 Silent p.T739T 0.42 TCGA-ZN-A9VV-01 1 38027833 38027833 A G DNALI1 Missense_Mutation p.N265S 0.40 deleterious(0.03) benign(0.148) TCGA-ZN-A9VV-01 1 46096198 46096198 C A GPBP1L1 Silent p.V375V 0.34 TCGA-ZN-A9VV-01 1 6512002 6512002 C T ESPN Missense_Mutation p.P724L 0.42 tolerated(0.12) probably_damaging(0.999) TCGA-ZN-A9VV-01 20 58180159 58180163 CTCCT - PHACTR3 Frame_Shift_Del p.S31Rfs*9 0.28 TCGA-ZN-A9VV-01 22 30050657 30050657 C - NF2 Frame_Shift_Del p.Y153* 0.37 TCGA-ZN-A9VV-01 3 39544313 39544313 T G MOBP Intron 0.47 TCGA-ZN-A9VV-01 3 47098559 47098559 G A SETD2 Nonsense_Mutation p.Q2239* 0.82 TCGA-ZN-A9VV-01 3 51897297 51897297 C T IQCF2 Missense_Mutation p.H136Y 0.84 deleterious(0.02) possibly_damaging(0.791) TCGA-ZN-A9VV-01 3 52439815 52439836 GTTTGCTTCCAGCACCAGCGGG - BAP1 Frame_Shift_Del p.P293Gfs*35 0.83 TCGA-ZN-A9VV-01 3 52815993 52815993 A T ITIH1 Missense_Mutation p.Q242L 0.87 deleterious(0) possibly_damaging(0.829) TCGA-ZN-A9VV-01 4 113353413 113353413 G T ALPK1 Missense_Mutation p.D904Y 0.04 deleterious(0) probably_damaging(0.962) TCGA-ZN-A9VV-01 4 1806180 1806180 G A FGFR3 Missense_Mutation p.S402N 0.45 tolerated(0.41) benign(0.005) TCGA-ZN-A9VV-01 5 157216463 157216463 G C CLINT1 Missense_Mutation p.P498R 0.46 deleterious(0) possibly_damaging(0.717) TCGA-ZN-A9VV-01 6 128040929 128040929 G C THEMIS Missense_Mutation p.Q639E 0.46 deleterious_low_confidence(0.04) benign(0.003) TCGA-ZN-A9VV-01 6 30884893 30884893 G A VARS2 Silent p.V285V 0.31 TCGA-ZN-A9VV-01 7 2420124 2420124 C T EIF3B 3'UTR 0.44 TCGA-ZN-A9VV-01 7 45115634 45115634 G A CCM2 Missense_Mutation p.S459N 0.54 tolerated(0.07) benign(0.059) TCGA-ZN-A9VV-01 8 1649552 1649552 G A DLGAP2 Missense_Mutation p.E970K 0.33 deleterious(0) probably_damaging(0.999) TCGA-ZN-A9VV-01 8 62538813 62538813 G C ASPH Intron 0.38 TCGA-ZN-A9VV-01 8 76456121 76456121 G T HNF4G Missense_Mutation p.R55I 0.39 deleterious(0) probably_damaging(0.948) TCGA-ZN-A9VV-01 9 116930818 116930818 C G COL27A1 Nonsense_Mutation p.S328* 0.43 TCGA-ZN-A9VV-01 9 135205837 135205837 T A SETX Missense_Mutation p.Y383F 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-ZN-A9VV-01 9 98220405 98220405 G - PTCH1 Frame_Shift_Del p.Q1020Sfs*29 0.11 TCGA-ZN-A9VV-01 9 98238318 98238318 G A PTCH1 Nonsense_Mutation p.Q576* 0.64 TCGA-ZN-A9VW-01 10 89717712 89717712 C T PTEN Missense_Mutation p.P246L 0.20 tolerated(0.06) benign(0.132) TCGA-ZN-A9VW-01 11 1260770 1260770 G T MUC5B Missense_Mutation p.C1186F 0.35 unknown(0) TCGA-ZN-A9VW-01 11 70332642 70332642 T G SHANK2 Missense_Mutation p.K1253N 0.29 deleterious(0) benign(0.403) TCGA-ZN-A9VW-01 12 104031011 104031011 G A STAB2 Missense_Mutation p.D236N 0.15 tolerated(0.12) benign(0.001) TCGA-ZN-A9VW-01 12 120589189 120589189 C A GCN1L1 Nonsense_Mutation p.E1357* 0.33 TCGA-ZN-A9VW-01 12 13724785 13724785 C G GRIN2B Missense_Mutation p.K708N 0.29 deleterious(0) possibly_damaging(0.52) TCGA-ZN-A9VW-01 12 22086810 22086810 G T ABCC9 Missense_Mutation p.L64I 0.25 tolerated(0.17) possibly_damaging(0.587) TCGA-ZN-A9VW-01 12 56661024 56661025 CG - COQ10A Frame_Shift_Del p.R42Tfs*22 0.27 TCGA-ZN-A9VW-01 12 56814804 56814804 C G TIMELESS Missense_Mutation p.V995L 0.25 tolerated(0.32) benign(0.018) TCGA-ZN-A9VW-01 13 103491004 103491004 T G BIVM-ERCC5 Missense_Mutation p.I350S 0.27 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-ZN-A9VW-01 13 45149703 45149703 G T TSC22D1 Missense_Mutation p.R170S 0.40 deleterious(0) probably_damaging(0.994) TCGA-ZN-A9VW-01 13 45517755 45517755 C A NUFIP1 Missense_Mutation p.S398I 0.43 deleterious(0.04) benign(0.344) TCGA-ZN-A9VW-01 13 48937087 48937087 A - RB1 Frame_Shift_Del p.I285Mfs*4 0.27 TCGA-ZN-A9VW-01 14 23896875 23896875 C T MYH7 Missense_Mutation p.E603K 0.25 deleterious(0.01) benign(0.222) TCGA-ZN-A9VW-01 14 55864145 55864145 C A ATG14 Missense_Mutation p.D77Y 0.32 deleterious(0) probably_damaging(0.983) TCGA-ZN-A9VW-01 15 42002919 42002919 G A MGA Missense_Mutation p.R819H 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-ZN-A9VW-01 15 63019311 63019311 G A TLN2 Missense_Mutation p.G1094E 0.26 deleterious(0.02) possibly_damaging(0.655) TCGA-ZN-A9VW-01 16 50357589 50357589 G A BRD7 Missense_Mutation p.T451M 0.26 deleterious(0.04) possibly_damaging(0.839) TCGA-ZN-A9VW-01 16 54967062 54967062 G T IRX5 Silent p.T243T 0.19 TCGA-ZN-A9VW-01 16 67683046 67683046 G A RLTPR Silent p.A553A 0.30 TCGA-ZN-A9VW-01 16 68573684 68573684 G A ZFP90 5'UTR 0.26 TCGA-ZN-A9VW-01 17 14248971 14248971 C T HS3ST3B1 3'UTR 0.26 TCGA-ZN-A9VW-01 17 3680878 3680878 C T ITGAE Silent p.V37V 0.27 TCGA-ZN-A9VW-01 18 12724733 12724733 A G PSMG2 Intron 0.32 TCGA-ZN-A9VW-01 18 34081918 34081918 C T FHOD3 Nonsense_Mutation p.R121* 0.19 TCGA-ZN-A9VW-01 19 13876829 13876829 G A MRI1 Missense_Mutation p.D145N 0.28 tolerated(0.2) benign(0.02) TCGA-ZN-A9VW-01 19 36223736 36223736 C T KMT2B Missense_Mutation p.L2096F 0.37 benign(0.075) TCGA-ZN-A9VW-01 19 36381310 36381310 G A NFKBID Missense_Mutation p.P230L 0.25 deleterious(0) probably_damaging(1) TCGA-ZN-A9VW-01 19 39214345 39214345 C T ACTN4 Missense_Mutation p.R512C 0.11 deleterious(0) probably_damaging(0.999) TCGA-ZN-A9VW-01 19 42351622 42351622 C T DMRTC2 Silent p.C42C 0.15 TCGA-ZN-A9VW-01 19 46388129 46388129 G A IRF2BP1 Missense_Mutation p.R302W 0.31 deleterious(0) possibly_damaging(0.531) TCGA-ZN-A9VW-01 19 55451283 55451283 G A NLRP7 Missense_Mutation p.R302W 0.30 deleterious(0) probably_damaging(0.958) TCGA-ZN-A9VW-01 19 58004654 58004654 G A ZNF419 Missense_Mutation p.M244I 0.31 tolerated(0.2) benign(0.097) TCGA-ZN-A9VW-01 1 150727599 150727599 T A CTSS Missense_Mutation p.S93C 0.15 deleterious(0.03) benign(0.002) TCGA-ZN-A9VW-01 1 17668535 17668535 C T PADI4 Silent p.Y250Y 0.36 TCGA-ZN-A9VW-01 1 223116393 223116393 G C DISP1 Missense_Mutation p.Q76H 0.06 deleterious_low_confidence(0.02) possibly_damaging(0.466) TCGA-ZN-A9VW-01 1 43200739 43200739 C T CLDN19 3'UTR 0.32 TCGA-ZN-A9VW-01 1 6190383 6190383 C T CHD5 Missense_Mutation p.G1090R 0.39 deleterious(0.01) probably_damaging(0.99) TCGA-ZN-A9VW-01 20 53208341 53208341 G T DOK5 Missense_Mutation p.G199V 0.22 deleterious(0) probably_damaging(0.997) TCGA-ZN-A9VW-01 20 57829870 57829870 C T ZNF831 3'UTR 0.32 TCGA-ZN-A9VW-01 20 60926765 60926765 C T LAMA5 Silent p.P317P 0.08 TCGA-ZN-A9VW-01 20 62065252 62065252 G A KCNQ2 Missense_Mutation p.A343V 0.19 tolerated(0.13) benign(0.102) TCGA-ZN-A9VW-01 22 30070877 30070877 G T NF2 Nonsense_Mutation p.E465* 0.32 TCGA-ZN-A9VW-01 22 50720356 50720356 T G PLXNB2 Missense_Mutation p.Y1091S 0.44 deleterious(0) probably_damaging(1) TCGA-ZN-A9VW-01 2 132914629 132914629 C A ANKRD30BL Missense_Mutation p.V142F 0.24 deleterious(0) benign(0.091) TCGA-ZN-A9VW-01 2 157435668 157435668 G T GPD2 Missense_Mutation p.V651L 0.22 tolerated(0.55) benign(0.009) TCGA-ZN-A9VW-01 3 123689047 123689047 G T ROPN1 Silent p.L138L 0.26 TCGA-ZN-A9VW-01 3 32769215 32769215 G C CNOT10 Missense_Mutation p.E416D 0.27 deleterious(0.01) probably_damaging(0.974) TCGA-ZN-A9VW-01 3 33155645 33155645 G A CRTAP Missense_Mutation p.A26T 0.30 deleterious(0) benign(0.024) TCGA-ZN-A9VW-01 3 38012928 38012928 G A CTDSPL Missense_Mutation p.E153K 0.24 deleterious(0.04) benign(0.331) TCGA-ZN-A9VW-01 3 52258211 52258211 C T TLR9 Missense_Mutation p.G195S 0.29 tolerated(0.42) benign(0.142) TCGA-ZN-A9VW-01 3 58728062 58728062 G C C3orf67 3'UTR 0.40 TCGA-ZN-A9VW-01 4 67902 67902 G C Z95704.1 3'Flank 0.11 TCGA-ZN-A9VW-01 5 128301839 128301839 G T SLC27A6 Silent p.L3L 0.38 TCGA-ZN-A9VW-01 5 131007835 131007835 G C FNIP1 Missense_Mutation p.R768G 0.33 deleterious(0) probably_damaging(0.998) TCGA-ZN-A9VW-01 5 140503797 140503797 C T PCDHB4 Silent p.S739S 0.29 TCGA-ZN-A9VW-01 5 176918879 176918879 G C PDLIM7 Missense_Mutation p.S109R 0.17 deleterious(0.04) benign(0) TCGA-ZN-A9VW-01 5 71739720 71739720 G C ZNF366 Missense_Mutation p.L700V 0.34 tolerated_low_confidence(0.16) benign(0.001) TCGA-ZN-A9VW-01 6 31759445 31759445 C T VARS Missense_Mutation p.G348S 0.36 deleterious(0) probably_damaging(1) TCGA-ZN-A9VW-01 6 3290032 3290032 G C SLC22A23 Missense_Mutation p.L427V 0.24 tolerated(0.1) probably_damaging(0.967) TCGA-ZN-A9VW-01 6 33284236 33284236 G A ZBTB22 Missense_Mutation p.S153L 0.28 deleterious(0.01) benign(0.018) TCGA-ZN-A9VW-01 7 139299130 139299130 G A HIPK2 Missense_Mutation p.A631V 0.25 tolerated(0.34) benign(0.01) TCGA-ZN-A9VW-01 7 150020602 150020602 T A ACTR3C 5'UTR 0.19 TCGA-ZN-A9VW-01 7 45010649 45010649 C T MYO1G Missense_Mutation p.E286K 0.07 tolerated(0.83) benign(0.013) TCGA-ZN-A9VW-01 8 17804789 17804789 T C PCM1 Missense_Mutation p.L293P 0.24 deleterious(0) probably_damaging(1) TCGA-ZN-A9VW-01 9 140099525 140099525 G C TMEM203 Missense_Mutation p.F114L 0.20 deleterious(0.03) benign(0.05) TCGA-ZN-A9VW-01 X 110005955 110005955 A C CHRDL1 Missense_Mutation p.L59V 0.65 tolerated(0.1) possibly_damaging(0.658) TCGA-ZN-A9VW-01 X 153588774 153588774 T C FLNA Missense_Mutation p.E1130G 0.57 deleterious(0.01) benign(0.274) TCGA-ZN-A9VW-01 X 65474912 65474912 A G HEPH Missense_Mutation p.R921G 0.52 deleterious(0) possibly_damaging(0.616) TCGA-ZN-A9VW-01 X 83362035 83362035 C G RPS6KA6 Missense_Mutation p.L375F 0.66 tolerated(0.05) benign(0.033)