sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-04-1353-01 10 95718994 95718994 G A PIPSL RNA 0.06 TCGA-04-1353-01 12 6657923 6657967 CTCCGACAGGGAGGTGTCCTCCTCGACGGCAGCCTTGCGCTCCCG - IFFO1 In_Frame_Del p.R369_E383del 0.35 TCGA-04-1353-01 13 99083507 99083507 A C FARP1 Missense_Mutation p.S706R 0.44 tolerated(0.5) benign(0.094) TCGA-04-1353-01 16 1961684 1961684 C T HS3ST6 Silent p.V281V 0.67 TCGA-04-1353-01 19 13049527 13049527 C T CALR Missense_Mutation p.L12F 0.39 tolerated(0.27) unknown(0) TCGA-04-1353-01 19 18331247 18331247 G A PDE4C Missense_Mutation p.T225I 0.05 deleterious(0) benign(0.418) TCGA-04-1353-01 19 55505643 55505643 G C NLRP2 Missense_Mutation p.W905C 0.05 tolerated(0.1) benign(0.199) TCGA-04-1353-01 1 235612133 235612133 G C TBCE 3'UTR 0.19 TCGA-04-1353-01 1 99772185 99772185 G T LPPR4 Silent p.P637P 0.42 TCGA-04-1353-01 20 21283968 21283968 T G XRN2 5'UTR 0.45 TCGA-04-1353-01 20 23473670 23473687 GAAATCTGCGCCATTCAA - CST8 In_Frame_Del p.I104_E109del 0.21 TCGA-04-1353-01 20 259879 259879 G T C20orf96 Silent p.I133I 0.41 TCGA-04-1353-01 20 36936034 36936034 G A BPI Missense_Mutation p.D70N 0.37 deleterious(0) benign(0.024) TCGA-04-1353-01 20 3766420 3766420 C G CENPB Missense_Mutation p.E237D 0.32 tolerated(0.23) unknown(0) TCGA-04-1353-01 20 42788633 42788633 C T JPH2 Missense_Mutation p.S265N 0.45 deleterious(0) probably_damaging(0.997) TCGA-04-1353-01 20 62324593 62324593 C G RTEL1 Missense_Mutation p.S1007R 0.48 deleterious(0) benign(0.067) TCGA-04-1353-01 2 203168125 203168125 A T NOP58 Missense_Mutation p.K519M 0.85 deleterious(0) possibly_damaging(0.781) TCGA-04-1353-01 2 219849831 219849831 G A FEV 5'UTR 0.50 TCGA-04-1353-01 2 27121400 27121400 C G DPYSL5 Silent p.L11L 0.20 TCGA-04-1353-01 2 74741846 74741846 C T TLX2 5'UTR 0.48 TCGA-04-1353-01 3 126748781 126748781 C T PLXNA1 Silent p.P1645P 0.44 TCGA-04-1353-01 4 48485724 48485724 G C SLC10A4 Missense_Mutation p.S49T 0.50 tolerated_low_confidence(0.05) benign(0.021) TCGA-04-1353-01 4 81187974 81187974 G C FGF5 5'UTR 0.40 TCGA-04-1353-01 5 150934013 150934013 G A FAT2 Silent p.D1285D 0.19 TCGA-04-1353-01 5 171433592 171433592 G C FBXW11 5'UTR 0.15 TCGA-04-1353-01 5 176074537 176074537 G C TSPAN17 5'UTR 0.30 TCGA-04-1353-01 8 145763178 145763178 C G ARHGAP39 Missense_Mutation p.E847D 0.27 tolerated(0.09) benign(0.075) TCGA-04-1353-01 9 127262732 127262732 C T NR5A1 Silent p.L169L 0.37 TCGA-04-1353-01 9 140135777 140135777 A G TUBB4B 5'UTR 0.36 TCGA-04-1369-01 10 5567383 5567383 G A CALML3 Missense_Mutation p.R112Q 0.20 deleterious_low_confidence(0.01) benign(0.009) TCGA-04-1369-01 10 91099434 91099434 C T IFIT3 Missense_Mutation p.T341M 0.21 deleterious(0.04) benign(0.003) TCGA-04-1369-01 11 4471489 4471489 G A OR52K2 Missense_Mutation p.G307E 0.12 tolerated(0.1) benign(0.002) TCGA-04-1369-01 11 5536659 5536659 C T UBQLNL Missense_Mutation p.G338D 0.09 tolerated(0.12) benign(0.026) TCGA-04-1369-01 11 56057993 56057993 T G OR8H1 Silent p.P182P 0.18 TCGA-04-1369-01 11 57886624 57886624 G A OR9I1 Missense_Mutation p.A98V 0.39 tolerated(0.1) probably_damaging(0.942) TCGA-04-1369-01 11 60075684 60075684 G C MS4A4A 3'UTR 0.30 TCGA-04-1369-01 11 62287701 62287701 G C AHNAK Missense_Mutation p.L4730V 0.07 possibly_damaging(0.832) TCGA-04-1369-01 11 62364298 62364298 C G MTA2 Splice_Site p.X232_splice 0.27 TCGA-04-1369-01 11 62651977 62651977 C T SLC3A2 Missense_Mutation p.R349W 0.04 deleterious(0.01) probably_damaging(0.975) TCGA-04-1369-01 11 72289292 72289292 G A PDE2A Missense_Mutation p.A867V 0.12 tolerated(0.21) benign(0.224) TCGA-04-1369-01 11 7961026 7961026 G A OR10A3 Silent p.L14L 0.13 TCGA-04-1369-01 11 89909192 89909192 G C NAALAD2 Missense_Mutation p.G519R 0.26 deleterious(0) probably_damaging(0.996) TCGA-04-1369-01 12 103232944 103232944 T A PAH 3'UTR 0.29 TCGA-04-1369-01 12 104129311 104129311 C T STAB2 Silent p.L1835L 0.33 TCGA-04-1369-01 12 109654609 109654609 G A ACACB Missense_Mutation p.D1150N 0.47 deleterious(0) possibly_damaging(0.871) TCGA-04-1369-01 12 113737674 113737675 CT - SLC8B1 Frame_Shift_Del p.R554Sfs*21 0.08 TCGA-04-1369-01 12 12311941 12311941 G T LRP6 Silent p.G871G 0.13 TCGA-04-1369-01 12 20885993 20885993 G C SLCO1C1 Missense_Mutation p.G446A 0.21 tolerated(0.65) probably_damaging(0.949) TCGA-04-1369-01 12 25672985 25672985 G T IFLTD1 Missense_Mutation p.H275N 0.20 deleterious(0) possibly_damaging(0.891) TCGA-04-1369-01 12 7301637 7301637 C T CLSTN3 Silent p.D639D 0.16 TCGA-04-1369-01 12 97313850 97313850 C A NEDD1 Missense_Mutation p.H153N 0.33 deleterious(0) probably_damaging(0.999) TCGA-04-1369-01 13 99092292 99092292 C T FARP1 Silent p.A837A 0.25 TCGA-04-1369-01 15 44177925 44177925 C T FRMD5 Missense_Mutation p.V305M 0.51 tolerated(0.06) benign(0.167) TCGA-04-1369-01 15 51504727 51504727 T C CYP19A1 Silent p.Q351Q 0.39 TCGA-04-1369-01 15 68582848 68582850 TCT - FEM1B In_Frame_Del p.L386del 0.37 TCGA-04-1369-01 16 70698039 70698039 C - MTSS1L Frame_Shift_Del p.T597Rfs*171 0.13 TCGA-04-1369-01 16 71163564 71163564 G A HYDIN Silent p.N402N 0.33 TCGA-04-1369-01 17 10443994 10443994 T G MYH2 Missense_Mutation p.N309H 0.32 deleterious(0) probably_damaging(0.996) TCGA-04-1369-01 17 19451412 19451412 C T SLC47A1 Silent p.L141L 0.36 TCGA-04-1369-01 17 20806014 20806014 G C RP11-344E13.3 RNA 0.40 TCGA-04-1369-01 17 37627173 37627173 C G CDK12 Nonsense_Mutation p.S363* 0.84 TCGA-04-1369-01 17 39296264 39296264 C A KRTAP4-6 Missense_Mutation p.C159F 0.05 deleterious(0.01) unknown(0) TCGA-04-1369-01 17 40475625 40475625 G A STAT3 Missense_Mutation p.S540L 0.08 tolerated(0.12) benign(0.102) TCGA-04-1369-01 17 42226345 42226345 C G C17orf53 Missense_Mutation p.R392G 0.13 tolerated(0.08) benign(0.027) TCGA-04-1369-01 17 7577099 7577099 C A TP53 Missense_Mutation p.R280I 0.84 deleterious(0) probably_damaging(0.977) TCGA-04-1369-01 18 30518008 30518008 A G CCDC178 Silent p.T857T 0.18 TCGA-04-1369-01 18 61471855 61471855 G A SERPINB7 Missense_Mutation p.V377I 0.06 tolerated(0.11) probably_damaging(0.999) TCGA-04-1369-01 19 10445863 10445863 G T ICAM3 Missense_Mutation p.D272E 0.20 deleterious(0.03) possibly_damaging(0.508) TCGA-04-1369-01 19 15839245 15839245 G A OR10H2 Missense_Mutation p.R131H 0.05 tolerated(0.24) benign(0.012) TCGA-04-1369-01 19 19389508 19389508 C A SUGP1 Missense_Mutation p.K542N 0.09 tolerated(0.1) probably_damaging(0.978) TCGA-04-1369-01 19 39957362 39957371 GCTGTTTGAT - SUPT5H Frame_Shift_Del p.F340Rfs*39 0.14 TCGA-04-1369-01 1 103380331 103380331 C T COL11A1 Missense_Mutation p.G1285S 0.13 unknown(0) TCGA-04-1369-01 1 120345694 120345694 G T REG4 Silent p.A54A 0.23 TCGA-04-1369-01 1 14113094 14113094 C T PRDM2 Intron 0.16 TCGA-04-1369-01 1 142803835 142803835 C T RP11-423O2.5 RNA 0.08 TCGA-04-1369-01 1 151107653 151107653 A G SEMA6C Silent p.H522H 0.24 TCGA-04-1369-01 1 152059310 152059310 T C TCHHL1 Missense_Mutation p.E283G 0.08 deleterious(0.02) benign(0.046) TCGA-04-1369-01 1 152193691 152193691 A G HRNR Silent p.D138D 0.19 TCGA-04-1369-01 1 152552193 152552193 C T LCE3D Missense_Mutation p.G74S 0.07 deleterious_low_confidence(0.03) unknown(0) TCGA-04-1369-01 1 158226066 158226066 C T CD1A Missense_Mutation p.R200W 0.10 deleterious(0) probably_damaging(0.977) TCGA-04-1369-01 1 186113321 186113321 C T HMCN1 Silent p.S4647S 0.20 TCGA-04-1369-01 1 186120472 186120472 C T HMCN1 Missense_Mutation p.R4917C 0.11 probably_damaging(0.994) TCGA-04-1369-01 1 187610770 187610770 C A ERVMER61-1 RNA 0.20 TCGA-04-1369-01 1 196392244 196392244 C A KCNT2 Splice_Site p.X374_splice 0.12 TCGA-04-1369-01 1 207039902 207039902 C A IL20 Missense_Mutation p.T100N 0.10 deleterious(0.02) benign(0.081) TCGA-04-1369-01 1 227192805 227192805 C A CDC42BPA Missense_Mutation p.R1587L 0.34 tolerated(0.44) benign(0.002) TCGA-04-1369-01 1 230928230 230928230 A C CAPN9 Missense_Mutation p.K594T 0.18 deleterious(0) possibly_damaging(0.69) TCGA-04-1369-01 1 242159384 242159384 C A MAP1LC3C 3'UTR 0.10 TCGA-04-1369-01 1 247769221 247769221 T C OR2G3 Missense_Mutation p.C112R 0.25 deleterious(0) probably_damaging(0.988) TCGA-04-1369-01 1 247769222 247769222 G T OR2G3 Missense_Mutation p.C112F 0.26 deleterious(0) probably_damaging(0.969) TCGA-04-1369-01 1 24841022 24841022 G A RCAN3 Missense_Mutation p.V54I 0.17 tolerated(0.32) possibly_damaging(0.843) TCGA-04-1369-01 20 34205117 34205117 C G SPAG4 Missense_Mutation p.L122V 0.18 tolerated(0.07) benign(0.017) TCGA-04-1369-01 20 42788455 42788455 G A JPH2 Silent p.H324H 0.50 TCGA-04-1369-01 20 60419732 60419732 C T CDH4 Silent p.S195S 0.10 TCGA-04-1369-01 20 60738631 60738631 G A SS18L1 Missense_Mutation p.S225N 0.26 tolerated_low_confidence(0.3) possibly_damaging(0.597) TCGA-04-1369-01 20 62325794 62325794 A T RTEL1 Missense_Mutation p.H1045L 0.15 tolerated(0.07) benign(0.331) TCGA-04-1369-01 21 31709853 31709853 C T KRTAP27-1 Missense_Mutation p.C45Y 0.26 deleterious(0.01) benign(0.008) TCGA-04-1369-01 22 21383369 21383369 G T SLC7A4 Missense_Mutation p.A628E 0.07 tolerated(0.1) possibly_damaging(0.5) TCGA-04-1369-01 2 170938463 170938463 G A UBR3 3'UTR 0.08 TCGA-04-1369-01 2 179640440 179640440 T C TTN Missense_Mutation p.K2051E 0.20 TCGA-04-1369-01 2 192288693 192288693 C A MYO1B 3'UTR 0.14 TCGA-04-1369-01 2 215802269 215802269 A G ABCA12 Missense_Mutation p.F2503L 0.10 tolerated(0.16) benign(0.165) TCGA-04-1369-01 3 136152417 136152417 C A STAG1 Missense_Mutation p.G544V 0.22 deleterious(0) probably_damaging(0.947) TCGA-04-1369-01 3 179458043 179458043 G A USP13 Silent p.Q421Q 0.14 TCGA-04-1369-01 3 182871541 182871541 C T LAMP3 Missense_Mutation p.V230I 0.22 tolerated(0.06) benign(0.361) TCGA-04-1369-01 3 192635635 192635635 A G MB21D2 5'UTR 0.09 TCGA-04-1369-01 3 87295008 87295008 G C CHMP2B Missense_Mutation p.V91L 0.10 tolerated(0.82) benign(0.002) TCGA-04-1369-01 4 110685797 110685797 T G CFI Silent p.I126I 0.06 TCGA-04-1369-01 4 152095977 152095977 T A SH3D19 Missense_Mutation p.K180M 0.23 tolerated(0.13) possibly_damaging(0.664) TCGA-04-1369-01 4 420587 420587 T C ABCA11P RNA 0.04 TCGA-04-1369-01 4 46305614 46305614 A T GABRA2 Missense_Mutation p.M240K 0.28 deleterious(0.01) possibly_damaging(0.906) TCGA-04-1369-01 4 69535866 69535866 A C UGT2B15 Missense_Mutation p.C157W 0.26 deleterious(0) possibly_damaging(0.512) TCGA-04-1369-01 4 70599966 70599966 C G SULT1B1 Missense_Mutation p.R131P 0.12 deleterious(0) probably_damaging(1) TCGA-04-1369-01 5 131307292 131307292 G A ACSL6 Missense_Mutation p.P462L 0.11 deleterious(0) possibly_damaging(0.856) TCGA-04-1369-01 5 140869168 140869168 G A PCDHGC5 Missense_Mutation p.V121I 0.34 tolerated(0.33) probably_damaging(0.984) TCGA-04-1369-01 5 178392373 178392373 G T ZNF454 Missense_Mutation p.S323I 0.13 deleterious(0) possibly_damaging(0.794) TCGA-04-1369-01 5 26881489 26881489 T C CDH9 Missense_Mutation p.N709S 0.18 tolerated(0.42) benign(0.191) TCGA-04-1369-01 5 78294042 78294042 G A DMGDH Silent p.L822L 0.05 TCGA-04-1369-01 6 165752848 165752848 C A PDE10A Splice_Site p.X700_splice 0.26 TCGA-04-1369-01 6 167412920 167412920 C T FGFR1OP Missense_Mutation p.A7V 0.27 tolerated_low_confidence(0.15) unknown(0) TCGA-04-1369-01 6 26225385 26225385 G A HIST1H3E Translation_Start_Site p.M1? 0.27 deleterious_low_confidence(0.01) benign(0.38) TCGA-04-1369-01 6 26509287 26509287 A G BTN1A1 Missense_Mutation p.Q489R 0.24 tolerated(0.54) benign(0.002) TCGA-04-1369-01 6 30522961 30522961 G C GNL1 Missense_Mutation p.L83V 0.26 deleterious(0.01) probably_damaging(0.911) TCGA-04-1369-01 6 31687061 31687061 G A LY6G6C Missense_Mutation p.R64C 0.22 tolerated(0.05) probably_damaging(0.997) TCGA-04-1369-01 6 41712155 41712155 T G PGC Missense_Mutation p.Y103S 0.26 deleterious(0.02) benign(0.349) TCGA-04-1369-01 6 57055298 57055298 C G RAB23 Missense_Mutation p.K225N 0.24 tolerated(0.15) benign(0.017) TCGA-04-1369-01 6 87725322 87725322 T C HTR1E Silent p.L90L 0.07 TCGA-04-1369-01 6 89907866 89907866 G T GABRR1 Missense_Mutation p.L149M 0.06 deleterious(0.02) probably_damaging(0.993) TCGA-04-1369-01 7 122768992 122768992 T C SLC13A1 Missense_Mutation p.E347G 0.21 deleterious(0) probably_damaging(1) TCGA-04-1369-01 7 150878445 150878445 C A ASB10 Nonsense_Mutation p.E229* 0.30 TCGA-04-1369-01 7 151859421 151859421 G A KMT2C Silent p.N3747N 0.21 TCGA-04-1369-01 7 51261206 51261206 G T COBL Missense_Mutation p.S109Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-04-1369-01 7 66520827 66520827 C T TYW1 Nonsense_Mutation p.Q370* 0.05 TCGA-04-1369-01 8 13162766 13162766 A C DLC1 Intron 0.04 TCGA-04-1369-01 8 145665428 145665428 C A TONSL Missense_Mutation p.G486C 0.26 deleterious(0.01) benign(0.016) TCGA-04-1369-01 8 81905489 81905489 G C PAG1 5'UTR 0.26 TCGA-04-1369-01 8 87165262 87165262 A C ATP6V0D2 3'UTR 0.16 TCGA-04-1369-01 8 87644981 87644981 T C CNGB3 Missense_Mutation p.Q440R 0.22 deleterious(0) probably_damaging(0.996) TCGA-04-1369-01 9 102866879 102866879 G A INVS Missense_Mutation p.D26N 0.17 tolerated(0.27) benign(0.118) TCGA-04-1369-01 9 117054448 117054448 G T COL27A1 Silent p.G1514G 0.27 TCGA-04-1369-01 9 39100025 39100025 C G CNTNAP3 Missense_Mutation p.G960R 0.17 deleterious(0) probably_damaging(1) TCGA-04-1369-01 9 916902 916902 C A DMRT1 Missense_Mutation p.A321E 0.18 deleterious(0) benign(0.297) TCGA-04-1369-01 9 96031125 96031125 C A WNK2 Missense_Mutation p.P1346Q 0.30 unknown(0) TCGA-04-1369-01 X 101818975 101818975 G T NXF4 Splice_Site 0.04 TCGA-04-1369-01 X 117054278 117054278 C A KLHL13 Missense_Mutation p.G102V 0.23 deleterious(0.03) benign(0.069) TCGA-04-1369-01 X 120183098 120183098 A C GLUD2 Missense_Mutation p.Q520H 0.23 tolerated(0.06) benign(0.357) TCGA-04-1369-01 X 16701313 16701313 C G CTPS2 Silent p.L303L 0.25 TCGA-04-1369-01 X 2209642 2209642 C A DHRSX Nonsense_Mutation p.E97* 0.10 TCGA-04-1369-01 X 30738166 30738166 A G GK Missense_Mutation p.H391R 0.03 deleterious(0) probably_damaging(1) TCGA-04-1369-01 X 34148304 34148304 A T FAM47A Missense_Mutation p.W698R 0.18 tolerated(0.08) benign(0.042) TCGA-04-1369-01 X 37027637 37027637 C A FAM47C Missense_Mutation p.T385N 0.21 deleterious(0.01) probably_damaging(0.978) TCGA-04-1369-01 X 49054268 49054268 C T SYP Missense_Mutation p.G45S 0.17 deleterious(0.04) probably_damaging(0.94) TCGA-04-1369-01 X 51239268 51239268 G T NUDT11 Missense_Mutation p.T10N 0.15 deleterious(0) probably_damaging(0.947) TCGA-04-1369-01 X 54278102 54278102 G A WNK3 Silent p.L796L 0.17 TCGA-04-1516-01 10 124922347 124922347 G A BUB3 Intron 0.45 TCGA-04-1516-01 11 14515232 14515232 G C COPB1 Missense_Mutation p.S149R 0.30 deleterious(0) possibly_damaging(0.795) TCGA-04-1516-01 11 55587539 55587539 T C OR5D18 Missense_Mutation p.L145P 0.25 deleterious(0) probably_damaging(0.995) TCGA-04-1516-01 11 6943157 6943157 A G OR2D3 Missense_Mutation p.R309G 0.17 deleterious(0) probably_damaging(0.928) TCGA-04-1516-01 11 74907586 74907586 A T SLCO2B1 Silent p.P487P 0.20 TCGA-04-1516-01 12 109283311 109283311 C T DAO Missense_Mutation p.P126S 0.06 deleterious(0) probably_damaging(0.947) TCGA-04-1516-01 12 6958147 6958147 G A CDCA3 3'UTR 0.16 TCGA-04-1516-01 14 102483485 102483485 C G DYNC1H1 Missense_Mutation p.H2637D 0.42 possibly_damaging(0.881) TCGA-04-1516-01 15 100537756 100537756 C A ADAMTS17 Missense_Mutation p.C877F 0.33 deleterious(0) probably_damaging(0.999) TCGA-04-1516-01 16 23700856 23700856 C G PLK1 Missense_Mutation p.H489Q 0.42 deleterious(0) possibly_damaging(0.516) TCGA-04-1516-01 16 25264268 25264268 T C ZKSCAN2 Missense_Mutation p.Q226R 0.26 deleterious(0.02) benign(0.322) TCGA-04-1516-01 16 55730170 55730170 C T SLC6A2 Missense_Mutation p.A394V 0.03 deleterious(0) possibly_damaging(0.864) TCGA-04-1516-01 17 10367839 10367839 C A MYH4 Missense_Mutation p.A200S 0.25 deleterious(0) benign(0.244) TCGA-04-1516-01 17 19454777 19454777 A T SLC47A1 Missense_Mutation p.N180I 0.37 deleterious(0) probably_damaging(0.988) TCGA-04-1516-01 17 26875116 26875116 C A UNC119 Missense_Mutation p.R113L 0.43 tolerated(0.19) possibly_damaging(0.891) TCGA-04-1516-01 17 39915076 39915076 T G JUP Missense_Mutation p.H515P 0.25 deleterious(0.02) possibly_damaging(0.519) TCGA-04-1516-01 17 57918423 57918423 G A VMP1 3'UTR 0.33 TCGA-04-1516-01 17 67133497 67133497 G T ABCA6 Missense_Mutation p.P81T 0.46 deleterious(0) probably_damaging(1) TCGA-04-1516-01 17 7577058 7577058 C A TP53 Nonsense_Mutation p.E294* 0.67 TCGA-04-1516-01 18 42531099 42531099 C G SETBP1 Silent p.V598V 0.08 TCGA-04-1516-01 19 14045201 14045201 G T PODNL1 Missense_Mutation p.Q180K 0.13 tolerated(1) benign(0.046) TCGA-04-1516-01 19 18497158 18497158 C T GDF15 Silent p.F53F 0.16 TCGA-04-1516-01 19 23927726 23927726 C A ZNF681 Missense_Mutation p.G209V 0.09 tolerated(0.53) probably_damaging(0.972) TCGA-04-1516-01 19 37677614 37677614 G A ZNF585B Silent p.C275C 0.07 TCGA-04-1516-01 1 1120563 1120563 G A TTLL10 Intron 0.25 TCGA-04-1516-01 1 169279234 169279234 G - NME7 Frame_Shift_Del p.K122Nfs*4 0.13 TCGA-04-1516-01 1 17274958 17274958 G C CROCC Missense_Mutation p.V883L 0.20 probably_damaging(0.921) TCGA-04-1516-01 1 190067300 190067300 C T BRINP3 Missense_Mutation p.G717S 0.22 deleterious(0.04) possibly_damaging(0.661) TCGA-04-1516-01 1 248309296 248309308 CCCATGCTGAATC - OR2M5 Frame_Shift_Del p.M284Sfs*10 0.13 TCGA-04-1516-01 20 10628753 10628753 G C JAG1 Missense_Mutation p.D525E 0.02 tolerated(0.16) probably_damaging(0.926) TCGA-04-1516-01 20 62190635 62190635 C A HELZ2 Missense_Mutation p.Q2638H 0.24 tolerated(0.18) benign(0.006) TCGA-04-1516-01 21 47572906 47572906 G T FTCD Silent p.I94I 0.10 TCGA-04-1516-01 22 20819202 20819202 T A KLHL22 Missense_Mutation p.Y352F 0.34 tolerated(0.18) benign(0.038) TCGA-04-1516-01 22 41856226 41856226 C G PHF5A 3'UTR 0.33 TCGA-04-1516-01 22 51011316 51011316 T C CPT1B Missense_Mutation p.N447S 0.08 tolerated(0.06) benign(0.035) TCGA-04-1516-01 2 113940052 113940052 C A PSD4 Missense_Mutation p.L7I 0.06 tolerated_low_confidence(0.05) benign(0.245) TCGA-04-1516-01 2 166532870 166532870 C A CSRNP3 Missense_Mutation p.L153M 0.19 deleterious(0.04) benign(0.273) TCGA-04-1516-01 2 179732906 179732906 C G CCDC141 Missense_Mutation p.E807D 0.14 tolerated(0.07) benign(0.106) TCGA-04-1516-01 2 27465202 27465202 C T CAD Silent p.I2043I 0.31 TCGA-04-1516-01 2 29543626 29543655 CCTGGAACCGGGCATCCTTTAGGGTCCTGA - ALK In_Frame_Del p.V503_Q512del 0.33 TCGA-04-1516-01 2 61024332 61024332 T A PAPOLG 3'UTR 0.39 TCGA-04-1516-01 3 107435527 107435527 G A BBX Missense_Mutation p.R79Q 0.20 deleterious(0) probably_damaging(0.99) TCGA-04-1516-01 3 132350184 132350184 C T ACAD11 Splice_Site p.X281_splice 0.19 TCGA-04-1516-01 3 142099015 142099015 T A XRN1 Missense_Mutation p.D875V 0.18 deleterious(0.03) benign(0.012) TCGA-04-1516-01 3 148614446 148614446 G A CPA3 Missense_Mutation p.M402I 0.12 deleterious(0.02) possibly_damaging(0.504) TCGA-04-1516-01 3 150911398 150911398 C G MED12L Missense_Mutation p.S697C 0.17 deleterious(0.03) possibly_damaging(0.645) TCGA-04-1516-01 3 154834774 154834774 A C MME Missense_Mutation p.H218P 0.39 deleterious(0.04) probably_damaging(0.999) TCGA-04-1516-01 3 183858305 183858305 C T EIF2B5 Missense_Mutation p.R315C 0.24 tolerated(0.15) benign(0.008) TCGA-04-1516-01 3 50385957 50385957 C T NPRL2 Splice_Site p.X240_splice 0.09 TCGA-04-1516-01 3 52771610 52771610 C T NEK4 Missense_Mutation p.D809N 0.49 deleterious(0.01) benign(0.039) TCGA-04-1516-01 3 53845564 53845564 G A CACNA1D 3'UTR 0.31 TCGA-04-1516-01 4 153601074 153601074 G C TMEM154 Silent p.P4P 0.46 TCGA-04-1516-01 5 114860860 114860860 A T FEM1C Silent p.S333S 0.51 TCGA-04-1516-01 5 36629575 36629575 C T SLC1A3 Nonsense_Mutation p.R69* 0.22 TCGA-04-1516-01 5 38337712 38337712 G C EGFLAM Missense_Mutation p.S63T 0.21 deleterious_low_confidence(0.01) benign(0.297) TCGA-04-1516-01 6 157528516 157528516 C T ARID1B Missense_Mutation p.L2081F 0.39 probably_damaging(0.997) TCGA-04-1516-01 6 161771035 161771035 C T PARK2 3'UTR 0.11 TCGA-04-1516-01 6 31928034 31928034 G T SKIV2L Missense_Mutation p.A92S 0.15 tolerated(1) benign(0.001) TCGA-04-1516-01 7 148950948 148950948 G C ZNF212 Missense_Mutation p.K310N 0.12 deleterious(0.03) benign(0.047) TCGA-04-1516-01 7 27135101 27135101 T A HOXA1 Missense_Mutation p.H144L 0.18 tolerated(0.42) probably_damaging(0.923) TCGA-04-1516-01 7 36763873 36763873 C T AOAH 5'UTR 0.22 TCGA-04-1516-01 7 75932058 75932058 T A HSPB1 Missense_Mutation p.L10H 0.36 deleterious(0.01) possibly_damaging(0.806) TCGA-04-1516-01 8 105511658 105511658 G T LRP12 Missense_Mutation p.A121D 0.46 deleterious(0.04) benign(0.384) TCGA-04-1516-01 8 143694873 143694873 A T ARC Missense_Mutation p.W254R 0.25 deleterious(0) probably_damaging(0.998) TCGA-04-1516-01 8 87498852 87498852 C G RMDN1 Missense_Mutation p.W119S 0.12 deleterious(0) probably_damaging(0.996) TCGA-04-1516-01 9 105767956 105767956 A T CYLC2 Missense_Mutation p.K348M 0.42 deleterious_low_confidence(0) unknown(0) TCGA-04-1516-01 9 132482984 132482984 A C PRRX2 Missense_Mutation p.Q186P 0.26 deleterious(0) possibly_damaging(0.86) TCGA-04-1516-01 X 11160360 11160360 T A ARHGAP6 Silent p.G750G 0.36 TCGA-04-1516-01 X 128873229 128873229 C T XPNPEP2 Missense_Mutation p.L14F 0.08 tolerated_low_confidence(0.16) benign(0.016) TCGA-04-1516-01 X 27766529 27766529 A C DCAF8L2 Missense_Mutation p.Q506P 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-04-1516-01 X 86772843 86772843 A C KLHL4 5'UTR 0.12 TCGA-04-1516-01 X 86772847 86772847 G T KLHL4 5'UTR 0.12 TCGA-04-1644-01 11 17432122 17432122 C G ABCC8 Missense_Mutation p.D879H 0.68 deleterious(0) benign(0.206) TCGA-04-1644-01 11 86133917 86133917 C T CCDC81 3'UTR 0.37 TCGA-04-1644-01 12 109940840 109940840 G A UBE3B Missense_Mutation p.R432H 0.43 deleterious(0.02) benign(0.022) TCGA-04-1644-01 12 112701910 112701910 T G HECTD4 Missense_Mutation p.Q765P 0.05 probably_damaging(0.943) TCGA-04-1644-01 13 95131230 95131230 T A DCT Missense_Mutation p.T94S 0.09 tolerated(0.25) benign(0.088) TCGA-04-1644-01 14 60074109 60074109 C T RTN1 Missense_Mutation p.V623I 0.41 deleterious(0.01) possibly_damaging(0.775) TCGA-04-1644-01 15 22958295 22958295 G A CYFIP1 Nonsense_Mutation p.W646* 0.38 TCGA-04-1644-01 16 19584459 19584459 C T C16orf62 Missense_Mutation p.R191C 0.41 deleterious(0.02) possibly_damaging(0.653) TCGA-04-1644-01 16 30507785 30507785 G A ITGAL Missense_Mutation p.G577E 0.72 deleterious(0.04) benign(0.077) TCGA-04-1644-01 19 16437789 16437789 C T KLF2 Missense_Mutation p.R339C 0.44 deleterious(0) unknown(0) TCGA-04-1644-01 19 35448892 35448892 G A ZNF792 Missense_Mutation p.H623Y 0.04 deleterious(0.03) benign(0.003) TCGA-04-1644-01 19 6183063 6183063 C G ACSBG2 Missense_Mutation p.P368A 0.08 deleterious(0.01) benign(0.345) TCGA-04-1644-01 1 12064078 12064078 G A MFN2 Missense_Mutation p.R397Q 0.74 tolerated(0.66) benign(0.293) TCGA-04-1644-01 1 210948740 210948740 A C KCNH1 Missense_Mutation p.S688A 0.06 tolerated(1) benign(0.001) TCGA-04-1644-01 1 42050016 42050016 G C HIVEP3 Missense_Mutation p.I151M 0.39 benign(0.372) TCGA-04-1644-01 1 62923222 62923222 C A DOCK7 Missense_Mutation p.V2092F 0.36 tolerated_low_confidence(0.72) benign(0.007) TCGA-04-1644-01 1 92755768 92755768 C T GLMN Silent p.Q127Q 0.36 TCGA-04-1644-01 20 23431148 23431148 C T CST11 Missense_Mutation p.D138N 0.07 tolerated(0.3) benign(0.084) TCGA-04-1644-01 20 34219655 34219655 G A CPNE1 Silent p.V199V 0.32 TCGA-04-1644-01 22 21345967 21345967 C T LZTR1 Missense_Mutation p.P281L 0.14 deleterious(0) probably_damaging(1) TCGA-04-1644-01 2 219209530 219209530 G A PNKD Splice_Site p.X329_splice 0.41 TCGA-04-1644-01 3 129389482 129389482 G T TMCC1 Missense_Mutation p.A401E 0.39 tolerated(0.12) benign(0.248) TCGA-04-1644-01 3 142567221 142567221 C A PCOLCE2 Missense_Mutation p.G96C 0.36 deleterious(0) probably_damaging(0.999) TCGA-04-1644-01 4 72423492 72423492 C T SLC4A4 Missense_Mutation p.R943C 0.79 deleterious(0) probably_damaging(1) TCGA-04-1644-01 5 138145786 138145786 C T CTNNA1 Nonsense_Mutation p.R121* 0.11 TCGA-04-1644-01 5 178409966 178409966 A G GRM6 Missense_Mutation p.I794T 0.71 deleterious(0) probably_damaging(0.987) TCGA-04-1644-01 5 55059883 55059883 T A DDX4 Missense_Mutation p.F109I 0.45 deleterious_low_confidence(0.04) benign(0.2) TCGA-04-1644-01 5 6663035 6663035 C T SRD5A1 Silent p.F223F 0.08 TCGA-04-1644-01 5 80088623 80088623 G T MSH3 Missense_Mutation p.G872V 0.14 deleterious(0.01) probably_damaging(0.965) TCGA-04-1644-01 6 111196329 111196329 C A AMD1 Missense_Mutation p.F7L 0.43 tolerated(0.08) benign(0.019) TCGA-04-1644-01 6 116442377 116442377 G C COL10A1 Missense_Mutation p.P301R 0.06 deleterious(0.03) unknown(0) TCGA-04-1644-01 6 117248539 117248539 G A RFX6 Silent p.A745A 0.09 TCGA-04-1644-01 6 169637845 169637845 T A THBS2 Missense_Mutation p.Q392L 0.45 deleterious(0.04) benign(0.04) TCGA-04-1644-01 6 2959420 2959420 G A SERPINB6 Silent p.T49T 0.43 TCGA-04-1644-01 6 30640696 30640696 G T DHX16 5'UTR 0.15 TCGA-04-1644-01 6 31931495 31931495 G C SKIV2L Missense_Mutation p.Q544H 0.34 tolerated(0.21) benign(0.001) TCGA-04-1644-01 7 107592565 107592565 G C LAMB1 Missense_Mutation p.I1061M 0.04 tolerated(0.21) benign(0.057) TCGA-04-1644-01 7 134136399 134136399 G A AKR1B1 Missense_Mutation p.A58V 0.36 deleterious(0.02) probably_damaging(0.963) TCGA-04-1644-01 7 144077105 144077105 C G ARHGEF5 Missense_Mutation p.R1584G 0.03 deleterious(0) probably_damaging(0.999) TCGA-04-1644-01 9 37126555 37126555 G A ZCCHC7 Missense_Mutation p.V76I 0.35 tolerated(0.81) benign(0.024) TCGA-04-1644-01 X 24523337 24523337 G C PDK3 Missense_Mutation p.G173R 0.06 deleterious(0.04) benign(0.31) TCGA-04-1644-01 X 54069219 54069219 G A PHF8 Silent p.P17P 0.36 TCGA-04-1644-01 X 80532588 80532588 G T SH3BGRL Nonsense_Mutation p.E51* 0.33 TCGA-09-2044-01 10 118458224 118458224 C A HSPA12A Silent p.T156T 0.11 TCGA-09-2044-01 10 124591758 124591758 G T CUZD1 3'UTR 0.11 TCGA-09-2044-01 10 127685191 127685191 C A FANK1 Silent p.T157T 0.09 TCGA-09-2044-01 10 15210507 15210507 G T NMT2 Silent p.A35A 0.11 TCGA-09-2044-01 10 26414461 26414461 A T MYO3A Nonsense_Mutation p.K680* 0.44 TCGA-09-2044-01 10 70646281 70646281 C A STOX1 Missense_Mutation p.P910Q 0.10 tolerated(0.07) benign(0.035) TCGA-09-2044-01 10 96602729 96602729 T A CYP2C19 Missense_Mutation p.L366Q 0.26 deleterious(0) possibly_damaging(0.88) TCGA-09-2044-01 11 108012384 108012384 T C ACAT1 Silent p.F261F 0.75 TCGA-09-2044-01 11 118958941 118958967 GTGACCTGGGGACTTTTTCTGCAGGAA - HMBS Splice_Site p.X12_splice 0.71 TCGA-09-2044-01 11 5536311 5536311 T G UBQLNL Missense_Mutation p.E454A 0.12 deleterious(0) benign(0.355) TCGA-09-2044-01 11 55659025 55659025 G T TRIM51 Missense_Mutation p.D426Y 0.16 tolerated(0.11) possibly_damaging(0.781) TCGA-09-2044-01 11 56057870 56057870 G T OR8H1 Silent p.T223T 0.30 TCGA-09-2044-01 11 57095888 57095888 G A SSRP1 Silent p.N498N 0.44 TCGA-09-2044-01 11 57886293 57886293 C A OR9I1 Missense_Mutation p.L208F 0.10 tolerated(0.52) probably_damaging(0.931) TCGA-09-2044-01 11 64033858 64033859 AC - PLCB3 Frame_Shift_Del p.D1113Efs*3 0.10 TCGA-09-2044-01 11 65392943 65392943 C - PCNXL3 Frame_Shift_Del p.P1034Rfs*21 0.09 TCGA-09-2044-01 11 65978677 65978677 C T PACS1 Missense_Mutation p.R203W 0.30 deleterious(0) probably_damaging(1) TCGA-09-2044-01 11 82639884 82639884 C T C11orf82 Missense_Mutation p.S60F 0.73 deleterious(0) probably_damaging(0.975) TCGA-09-2044-01 11 92087887 92087887 T G FAT3 Missense_Mutation p.V870G 0.79 possibly_damaging(0.811) TCGA-09-2044-01 12 101679398 101679398 C - UTP20 Frame_Shift_Del p.L60Sfs*29 0.08 TCGA-09-2044-01 12 107391845 107391845 C A CRY1 Splice_Site p.X380_splice 0.14 TCGA-09-2044-01 12 118462752 118462752 G T RFC5 Missense_Mutation p.R173L 0.22 deleterious(0) probably_damaging(0.997) TCGA-09-2044-01 12 120436370 120436370 C A CCDC64 Silent p.R159R 0.10 TCGA-09-2044-01 12 123285819 123285819 T G CCDC62 Missense_Mutation p.C376G 0.16 deleterious(0.01) possibly_damaging(0.818) TCGA-09-2044-01 12 123794119 123794119 C A SBNO1 Nonsense_Mutation p.G1152* 0.12 TCGA-09-2044-01 12 18890324 18890324 G A PLCZ1 5'UTR 0.51 TCGA-09-2044-01 12 42499769 42499770 TG A GXYLT1 Frame_Shift_Del p.T239Hfs*15 0.26 TCGA-09-2044-01 12 5685019 5685019 G T ANO2 Missense_Mutation p.Q868K 0.10 tolerated(0.79) benign(0.132) TCGA-09-2044-01 13 102379046 102379046 A G FGF14 Silent p.L180L 0.76 TCGA-09-2044-01 13 43788217 43788217 G T ENOX1 Missense_Mutation p.P614Q 0.12 tolerated(0.32) probably_damaging(0.998) TCGA-09-2044-01 13 86370376 86370376 C A SLITRK6 Missense_Mutation p.A90S 0.17 deleterious(0.02) probably_damaging(0.918) TCGA-09-2044-01 14 101418195 101418197 GAC AA SNORD114-2 RNA 0.10 TCGA-09-2044-01 14 103174915 103174915 G - RCOR1 Frame_Shift_Del p.E259Rfs*80 0.10 TCGA-09-2044-01 14 20940544 20940545 TC - PNP Frame_Shift_Del p.I30Mfs*10 0.50 TCGA-09-2044-01 14 33015182 33015182 G A AKAP6 Silent p.L441L 0.44 TCGA-09-2044-01 14 39561813 39561813 C A SEC23A Missense_Mutation p.G100C 0.13 deleterious(0.01) benign(0.127) TCGA-09-2044-01 14 71555058 71555058 G T PCNX Silent p.V1783V 0.12 TCGA-09-2044-01 14 75265245 75265248 GGTT - YLPM1 Frame_Shift_Del p.L1083* 0.54 TCGA-09-2044-01 14 76644340 76644340 A T GPATCH2L Missense_Mutation p.K354N 0.44 tolerated(0.46) probably_damaging(0.978) TCGA-09-2044-01 14 96730614 96730614 C A BDKRB1 Missense_Mutation p.H199N 0.55 tolerated(0.41) benign(0.006) TCGA-09-2044-01 15 34395145 34395145 C A PGBD4 Missense_Mutation p.P138Q 0.11 tolerated(0.28) benign(0.016) TCGA-09-2044-01 15 43817963 43817963 C A MAP1A Missense_Mutation p.P1431Q 0.12 benign(0.007) TCGA-09-2044-01 15 66044777 66044780 ACTG TTTTT DENND4A Frame_Shift_Ins p.S167Kfs*19 0.08 TCGA-09-2044-01 15 90984863 90984863 C A IQGAP1 Missense_Mutation p.Q259K 0.11 deleterious(0.01) benign(0.091) TCGA-09-2044-01 16 11444576 11444576 C T RMI2 Missense_Mutation p.L125F 0.52 deleterious(0) probably_damaging(1) TCGA-09-2044-01 16 14041793 14041793 C T ERCC4 Silent p.S780S 0.12 TCGA-09-2044-01 16 20843514 20843514 C A AC004381.6 Missense_Mutation p.Q399K 0.12 deleterious(0.04) benign(0.065) TCGA-09-2044-01 16 27715295 27715295 C A KIAA0556 Silent p.T455T 0.10 TCGA-09-2044-01 16 29824513 29824513 G A PRRT2 Silent p.E46E 0.90 TCGA-09-2044-01 17 15641337 15641337 C A TBC1D26 Silent p.T75T 0.17 TCGA-09-2044-01 17 17788043 17788043 C A TOM1L2 Missense_Mutation p.G136C 0.11 deleterious(0) probably_damaging(0.999) TCGA-09-2044-01 17 18387230 18387230 C A LGALS9C Missense_Mutation p.D27E 0.14 tolerated(0.85) benign(0.005) TCGA-09-2044-01 17 39092860 39092860 C G KRT23 5'UTR 0.64 TCGA-09-2044-01 17 41165628 41165628 G T IFI35 Missense_Mutation p.V173F 0.86 tolerated(0.36) benign(0.005) TCGA-09-2044-01 17 48757203 48757203 G T ABCC3 Missense_Mutation p.L1250F 0.10 deleterious(0.04) probably_damaging(0.934) TCGA-09-2044-01 17 57094707 57094738 TCCACTGCTCTTCGAAGTGATAGACTACCTGC - TRIM37 Frame_Shift_Del p.A769Pfs*5 0.10 TCGA-09-2044-01 17 63221418 63221418 G A RGS9 Missense_Mutation p.R569Q 0.62 tolerated_low_confidence(0.74) benign(0) TCGA-09-2044-01 17 65900902 65900902 G C BPTF Missense_Mutation p.V920L 0.36 benign(0.012) TCGA-09-2044-01 17 73520434 73520434 G T TSEN54 Missense_Mutation p.G508C 0.12 deleterious(0) probably_damaging(0.973) TCGA-09-2044-01 17 7480957 7480957 A G EIF4A1 Missense_Mutation p.N280S 0.73 deleterious(0.04) benign(0.039) TCGA-09-2044-01 17 76454653 76454653 G T DNAH17 Missense_Mutation p.A3310E 0.08 probably_damaging(0.995) TCGA-09-2044-01 17 7700538 7700538 C A DNAH2 Silent p.T2636T 0.09 TCGA-09-2044-01 17 8158843 8158843 G - PFAS Frame_Shift_Del p.V137Wfs*13 0.20 TCGA-09-2044-01 18 118410 118410 G T ROCK1P1 RNA 0.11 TCGA-09-2044-01 18 13666515 13666515 G T FAM210A Silent p.T261T 0.19 TCGA-09-2044-01 18 29488308 29488308 G T TRAPPC8 Missense_Mutation p.P399Q 0.10 deleterious(0) probably_damaging(0.986) TCGA-09-2044-01 18 33696689 33696689 G T SLC39A6 Silent p.S471S 0.13 TCGA-09-2044-01 19 18376546 18376546 C - KIAA1683 Frame_Shift_Del p.E602Kfs*50 0.17 TCGA-09-2044-01 19 42600048 42600050 CGT - POU2F2 In_Frame_Del p.Y232_G233delinsC 0.08 TCGA-09-2044-01 19 54216681 54216681 G A MIR519D RNA 0.41 TCGA-09-2044-01 19 55106396 55106396 C T LILRA1 Missense_Mutation p.P113S 0.40 tolerated(0.07) probably_damaging(0.97) TCGA-09-2044-01 19 57984804 57984804 G A ZNF772 Silent p.C436C 0.44 TCGA-09-2044-01 1 11906071 11906071 A G NPPA Missense_Mutation p.Y151H 0.30 deleterious(0) possibly_damaging(0.736) TCGA-09-2044-01 1 150915508 150915508 C A SETDB1 Missense_Mutation p.P285Q 0.12 deleterious(0.03) probably_damaging(0.998) TCGA-09-2044-01 1 153312924 153312924 G A PGLYRP4 Missense_Mutation p.R253C 0.38 tolerated(0.21) benign(0.222) TCGA-09-2044-01 1 161134340 161134340 G T USP21 Missense_Mutation p.R441L 0.11 deleterious(0.02) benign(0.107) TCGA-09-2044-01 1 161976198 161976198 G T OLFML2B Silent p.T204T 0.09 TCGA-09-2044-01 1 17594343 17594343 A G PADI3 Missense_Mutation p.M180V 0.15 deleterious(0) possibly_damaging(0.876) TCGA-09-2044-01 1 178269208 178269208 G T RASAL2 Nonsense_Mutation p.E138* 0.23 TCGA-09-2044-01 1 196250056 196250056 A C KCNT2 Missense_Mutation p.C948W 0.73 deleterious(0) probably_damaging(0.982) TCGA-09-2044-01 1 207242814 207242814 C A PFKFB2 Missense_Mutation p.P345T 0.10 probably_damaging(0.999) TCGA-09-2044-01 1 215256758 215256758 C A KCNK2 Silent p.P10P 0.09 TCGA-09-2044-01 1 228363029 228363029 G T IBA57 Missense_Mutation p.G296C 0.12 deleterious(0) probably_damaging(0.998) TCGA-09-2044-01 1 228602392 228602392 G T TRIM17 Silent p.R128R 0.13 TCGA-09-2044-01 1 237660038 237660038 T C RYR2 Missense_Mutation p.L730P 0.56 probably_damaging(1) TCGA-09-2044-01 1 241798263 241798263 C A CHML Missense_Mutation p.R269L 0.12 tolerated(0.48) benign(0.008) TCGA-09-2044-01 1 39988002 39988002 C G BMP8A Intron 0.50 TCGA-09-2044-01 1 40874358 40874358 C A SMAP2 Silent p.R91R 0.13 TCGA-09-2044-01 1 43621988 43621989 CC - FAM183A 3'UTR 0.08 TCGA-09-2044-01 1 70728372 70728372 G T ANKRD13C 3'UTR 0.11 TCGA-09-2044-01 1 71544342 71544342 G T ZRANB2 Silent p.R36R 0.09 TCGA-09-2044-01 1 85624770 85624770 G T SYDE2 Missense_Mutation p.P1083Q 0.10 deleterious(0) probably_damaging(0.98) TCGA-09-2044-01 1 99156695 99156695 G T SNX7 Missense_Mutation p.W143L 0.12 deleterious(0) probably_damaging(1) TCGA-09-2044-01 20 2846086 2846086 A G VPS16 Missense_Mutation p.D739G 0.33 tolerated(0.07) possibly_damaging(0.652) TCGA-09-2044-01 20 31601751 31601751 T A BPIFB2 Missense_Mutation p.D148E 0.34 tolerated(0.38) benign(0.025) TCGA-09-2044-01 20 31601752 31601752 G A BPIFB2 Missense_Mutation p.G149S 0.35 tolerated(0.09) benign(0.331) TCGA-09-2044-01 20 35399277 35399277 T G DSN1 Silent p.T118T 0.33 TCGA-09-2044-01 20 36770530 36770530 G C TGM2 Missense_Mutation p.L311V 0.17 deleterious(0) probably_damaging(0.963) TCGA-09-2044-01 20 3760382 3760382 C A SPEF1 Missense_Mutation p.M50I 0.12 tolerated(0.1) benign(0.29) TCGA-09-2044-01 20 44430077 44430077 G T DNTTIP1 Nonsense_Mutation p.G160* 0.38 TCGA-09-2044-01 20 46365480 46365480 C A SULF2 Missense_Mutation p.A128S 0.44 deleterious(0.04) benign(0.113) TCGA-09-2044-01 20 48263528 48263528 G T B4GALT5 Missense_Mutation p.T113N 0.41 tolerated(0.27) benign(0.042) TCGA-09-2044-01 20 50701650 50701650 G A ZFP64 Missense_Mutation p.R462C 0.10 deleterious(0) probably_damaging(0.994) TCGA-09-2044-01 21 37661381 37661381 C A DOPEY2 Missense_Mutation p.P2131Q 0.10 tolerated(0.59) benign(0.005) TCGA-09-2044-01 22 18301431 18301431 C A MICAL3 Silent p.A1332A 0.12 TCGA-09-2044-01 22 36962469 36962469 C - CACNG2 Frame_Shift_Del p.A123Qfs*14 0.12 TCGA-09-2044-01 22 41252485 41252485 C A ST13 Silent p.P20P 0.15 TCGA-09-2044-01 2 103053804 103053804 G T IL18RAP Missense_Mutation p.V238F 0.46 deleterious(0) probably_damaging(0.996) TCGA-09-2044-01 2 127828167 127828167 C T BIN1 Missense_Mutation p.D93N 0.40 deleterious(0) possibly_damaging(0.853) TCGA-09-2044-01 2 182344910 182344910 C G ITGA4 Missense_Mutation p.S224C 0.12 deleterious(0) probably_damaging(0.94) TCGA-09-2044-01 2 192261220 192261220 G C MYO1B Missense_Mutation p.W764C 0.42 deleterious(0.02) benign(0.346) TCGA-09-2044-01 2 234545823 234545823 T C UGT1A10 Missense_Mutation p.F219L 0.45 tolerated(1) benign(0.011) TCGA-09-2044-01 2 237240044 237240044 G T IQCA1 Silent p.T777T 0.11 TCGA-09-2044-01 2 26203452 26203452 G T KIF3C Silent p.P445P 0.80 TCGA-09-2044-01 2 33817187 33817187 G - FAM98A Frame_Shift_Del p.K100Sfs*20 0.08 TCGA-09-2044-01 2 74777330 74777330 C A LOXL3 Silent p.S153S 0.11 TCGA-09-2044-01 3 100287783 100287783 G A TMEM45A Missense_Mutation p.V236I 0.41 tolerated(0.68) benign(0.005) TCGA-09-2044-01 3 10123212 10123212 G C FANCD2 Intron 0.40 TCGA-09-2044-01 3 122990554 122990554 C A SEC22A Silent p.P303P 0.10 TCGA-09-2044-01 3 128060192 128060192 G T EEFSEC Silent p.G301G 0.26 TCGA-09-2044-01 3 137958347 137958349 GAT - ARMC8 In_Frame_Del p.D259del 0.21 TCGA-09-2044-01 3 141274689 141274689 C A RASA2 Missense_Mutation p.Q207K 0.12 tolerated(0.91) benign(0.192) TCGA-09-2044-01 3 14489330 14489330 G T SLC6A6 Intron 0.65 TCGA-09-2044-01 3 17109452 17109452 G T PLCL2 Missense_Mutation p.M907I 0.09 tolerated(0.07) benign(0.354) TCGA-09-2044-01 3 183910418 183910418 C G ABCF3 Silent p.T533T 0.61 TCGA-09-2044-01 3 195610111 195610111 G T TNK2 Silent p.R239R 0.10 TCGA-09-2044-01 3 41278077 41278077 A G CTNNB1 Splice_Site p.X652_splice 0.19 TCGA-09-2044-01 3 46619400 46619400 G T TDGF1 5'UTR 0.12 TCGA-09-2044-01 3 47677519 47677519 G T SMARCC1 Silent p.T828T 0.11 TCGA-09-2044-01 3 48609450 48609450 C G COL7A1 Missense_Mutation p.G2351A 0.28 probably_damaging(1) TCGA-09-2044-01 3 49315857 49315857 G T USP4 Missense_Mutation p.Q921K 0.08 deleterious(0.04) benign(0.029) TCGA-09-2044-01 3 50403456 50403456 G T CACNA2D2 Silent p.R957R 0.18 TCGA-09-2044-01 3 51430391 51430391 C A RBM15B Missense_Mutation p.R521S 0.10 tolerated(0.07) benign(0.034) TCGA-09-2044-01 4 126241925 126241925 T A FAT4 Silent p.G1453G 0.60 TCGA-09-2044-01 4 164393547 164393547 C A TKTL2 Missense_Mutation p.C447F 0.90 deleterious(0.01) probably_damaging(0.992) TCGA-09-2044-01 4 175580273 175580273 C T GLRA3 Missense_Mutation p.A335T 0.43 deleterious(0.03) probably_damaging(0.982) TCGA-09-2044-01 4 183960211 183960211 C A FAM92A1P2 RNA 0.18 TCGA-09-2044-01 4 20620429 20620429 C A SLIT2 Missense_Mutation p.Q1463K 0.15 tolerated(0.29) probably_damaging(0.953) TCGA-09-2044-01 4 76817470 76817470 G A PPEF2 Silent p.S3S 0.42 TCGA-09-2044-01 5 101834369 101834369 C A SLCO6A1 Missense_Mutation p.R60S 0.43 deleterious(0.02) benign(0.121) TCGA-09-2044-01 5 139887569 139887569 G C ANKHD1 Missense_Mutation p.E1251Q 0.09 unknown(0) TCGA-09-2044-01 5 140589667 140589667 G T PCDHB12 Silent p.S396S 0.11 TCGA-09-2044-01 5 141026288 141026288 A G FCHSD1 Missense_Mutation p.V309A 0.39 deleterious(0.04) benign(0.14) TCGA-09-2044-01 5 16672879 16672879 G A MYO10 Missense_Mutation p.A1743V 0.27 deleterious(0) probably_damaging(0.985) TCGA-09-2044-01 5 171297801 171297801 G T FBXW11 Silent p.R447R 0.10 TCGA-09-2044-01 5 37371122 37371122 C A NUP155 5'UTR 0.14 TCGA-09-2044-01 5 39285278 39285278 G T C9 3'UTR 0.10 TCGA-09-2044-01 5 45396641 45396641 C A HCN1 Missense_Mutation p.A395S 0.11 deleterious(0.03) benign(0.194) TCGA-09-2044-01 5 5460573 5460573 G A KIAA0947 Missense_Mutation p.D376N 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-09-2044-01 5 55212641 55212641 A G IL31RA Missense_Mutation p.N663S 0.77 tolerated(0.08) benign(0.069) TCGA-09-2044-01 5 75597253 75597253 G T SV2C Missense_Mutation p.W628L 0.09 tolerated(0.89) benign(0.092) TCGA-09-2044-01 5 79441989 79441990 AG - SERINC5 Frame_Shift_Del p.Y388Hfs*? 0.08 TCGA-09-2044-01 5 90004684 90004684 G T GPR98 Nonsense_Mutation p.G2928* 0.12 TCGA-09-2044-01 5 90021468 90021468 A T GPR98 Missense_Mutation p.T3386S 0.80 benign(0.012) TCGA-09-2044-01 6 107391251 107391251 G T BEND3 Silent p.R382R 0.17 TCGA-09-2044-01 6 161527627 161527630 GGAG AAA MAP3K4 Frame_Shift_Del p.R1313Kfs*24 0.08 TCGA-09-2044-01 6 31729282 31729282 C A MSH5 Silent p.R692R 0.12 TCGA-09-2044-01 6 35454350 35454350 A C TEAD3 Missense_Mutation p.D30E 0.38 tolerated(0.1) possibly_damaging(0.807) TCGA-09-2044-01 6 35918966 35918966 G A SLC26A8 Missense_Mutation p.R816W 0.32 deleterious(0) possibly_damaging(0.513) TCGA-09-2044-01 6 39877596 39877596 T C MOCS1 Missense_Mutation p.K362R 0.79 deleterious(0.02) benign(0.386) TCGA-09-2044-01 6 56006620 56006620 G T COL21A1 Missense_Mutation p.P502Q 0.12 tolerated(0.17) benign(0.068) TCGA-09-2044-01 6 56464929 56464929 G T DST Missense_Mutation p.Q1255K 0.12 benign(0.031) TCGA-09-2044-01 6 74517956 74517956 A C CD109 Silent p.R1114R 0.27 TCGA-09-2044-01 7 116339800 116339800 A G MET Missense_Mutation p.E221G 0.18 tolerated(0.74) probably_damaging(0.998) TCGA-09-2044-01 7 142378952 142378952 A G MTRNR2L6 3'Flank 0.40 TCGA-09-2044-01 7 149420954 149420954 C A KRBA1 Missense_Mutation p.P301Q 0.11 deleterious(0.02) possibly_damaging(0.6) TCGA-09-2044-01 7 32956864 32956864 G T RP9P RNA 0.10 TCGA-09-2044-01 7 77378756 77378756 C A RSBN1L Missense_Mutation p.P240Q 0.12 deleterious(0.02) benign(0.14) TCGA-09-2044-01 8 2876161 2876161 C A CSMD1 Nonsense_Mutation p.G2623* 0.11 TCGA-09-2044-01 8 62489351 62489351 C G ASPH Missense_Mutation p.A377P 0.44 deleterious(0) probably_damaging(0.998) TCGA-09-2044-01 8 65509443 65509443 G A CYP7B1 Missense_Mutation p.T426I 0.29 deleterious(0.02) probably_damaging(0.98) TCGA-09-2044-01 8 68087480 68087480 C G CSPP1 Intron 0.31 TCGA-09-2044-01 8 86042195 86042195 C A LRRCC1 Silent p.A556A 0.10 TCGA-09-2044-01 9 104449408 104449408 G T GRIN3A Silent p.T258T 0.09 TCGA-09-2044-01 9 114305002 114305002 G T ZNF483 Missense_Mutation p.R596L 0.08 tolerated(0.08) benign(0.409) TCGA-09-2044-01 9 120476874 120476874 C A TLR4 Missense_Mutation p.P823Q 0.10 deleterious(0.03) probably_damaging(0.977) TCGA-09-2044-01 9 135204974 135204974 G T SETX Missense_Mutation p.Q671K 0.11 tolerated_low_confidence(0.1) benign(0.003) TCGA-09-2044-01 9 135779074 135779084 GATCACCTTGC - TSC1 Frame_Shift_Del p.R721Qfs*9 0.69 TCGA-09-2044-01 9 136199561 136199561 C T SURF6 Silent p.E143E 0.40 TCGA-09-2044-01 9 27548308 27548308 C G C9orf72 Missense_Mutation p.G458R 0.36 deleterious(0) probably_damaging(1) TCGA-09-2044-01 9 34259595 34259595 G T KIF24 Silent p.R542R 0.09 TCGA-09-2044-01 9 88292356 88292356 G T AGTPBP1 Missense_Mutation p.P144Q 0.11 tolerated(0.4) benign(0.108) TCGA-09-2044-01 9 98215884 98215884 C A PTCH1 Missense_Mutation p.G1109C 0.18 deleterious(0) probably_damaging(1) TCGA-09-2044-01 X 103434385 103434385 T C FAM199X Missense_Mutation p.F365L 0.76 deleterious(0) probably_damaging(0.943) TCGA-09-2044-01 X 106841228 106841228 G A FRMPD3 Missense_Mutation p.V740M 0.21 deleterious(0) probably_damaging(0.999) TCGA-09-2044-01 X 133512052 133512052 G T PHF6 Missense_Mutation p.L52F 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-09-2044-01 X 135092617 135092617 C A SLC9A6 Missense_Mutation p.Q306K 0.10 tolerated(0.14) probably_damaging(0.99) TCGA-09-2044-01 X 2924734 2924746 TAACTCAGTGAGG - ARSH Splice_Site p.X28_splice 0.12 TCGA-10-0934-01 10 101646214 101646214 C T DNMBP Missense_Mutation p.R1154Q 0.39 tolerated(0.07) probably_damaging(0.955) TCGA-10-0934-01 11 124747920 124747920 C T ROBO3 Missense_Mutation p.A1025V 0.47 tolerated(0.12) benign(0.004) TCGA-10-0934-01 13 111767940 111767940 A C ARHGEF7 Missense_Mutation p.T23P 0.57 deleterious_low_confidence(0.01) benign(0.34) TCGA-10-0934-01 17 4689599 4689599 G A VMO1 Missense_Mutation p.R17W 0.48 tolerated(0.24) benign(0) TCGA-10-0934-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.41 tolerated(0.13) possibly_damaging(0.631) TCGA-10-0934-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.45 deleterious(0) probably_damaging(1) TCGA-10-0934-01 19 2039753 2039753 C T MKNK2 Silent p.A419A 0.42 TCGA-10-0934-01 19 21300346 21300346 T A ZNF714 Silent p.A292A 0.41 TCGA-10-0934-01 19 40902612 40902612 C T PRX Silent p.P549P 0.46 TCGA-10-0934-01 19 58511168 58511168 C G ZNF606 Intron 0.31 TCGA-10-0934-01 1 160208489 160208489 G A DCAF8 Missense_Mutation p.R258C 0.29 deleterious(0) benign(0.435) TCGA-10-0934-01 1 35334650 35334650 C T DLGAP3 Missense_Mutation p.V681M 0.41 deleterious(0.02) probably_damaging(0.924) TCGA-10-0934-01 2 17959283 17959283 G T GEN1 Missense_Mutation p.R406L 0.26 deleterious(0) probably_damaging(0.973) TCGA-10-0934-01 2 31758813 31758813 T C AL133247.2 Intron 0.26 TCGA-10-0934-01 2 32289109 32289109 A C SPAST Missense_Mutation p.H70P 0.53 tolerated(0.11) benign(0.346) TCGA-10-0934-01 4 52743949 52743949 C T DCUN1D4 Missense_Mutation p.S91L 0.45 tolerated(0.06) benign(0.011) TCGA-10-0934-01 7 150648860 150648860 G A KCNH2 Missense_Mutation p.R541C 0.46 deleterious(0) probably_damaging(1) TCGA-10-0934-01 8 10755661 10755661 C T XKR6 Missense_Mutation p.R576H 0.38 tolerated(0.08) probably_damaging(0.945) TCGA-10-0934-01 8 110455224 110455224 C T PKHD1L1 Silent p.S1481S 0.08 TCGA-10-0934-01 X 48760625 48760625 C T SLC35A2 3'UTR 0.47 TCGA-13-0751-01 10 135024970 135024970 G T KNDC1 Missense_Mutation p.R1318L 0.49 deleterious(0) probably_damaging(0.998) TCGA-13-0751-01 10 51769139 51769139 C T AGAP6 Silent p.G418G 0.46 TCGA-13-0751-01 10 63170155 63170155 G A TMEM26 Silent p.N344N 0.05 TCGA-13-0751-01 11 111796415 111796415 C T C11orf52 Nonsense_Mutation p.Q37* 0.23 TCGA-13-0751-01 11 134177017 134177017 G T GLB1L3 Splice_Site p.X293_splice 0.32 TCGA-13-0751-01 11 47500431 47500431 C A CELF1 Missense_Mutation p.G280V 0.12 tolerated(0.14) probably_damaging(0.979) TCGA-13-0751-01 11 62301009 62301009 G T AHNAK Missense_Mutation p.P294T 0.61 possibly_damaging(0.688) TCGA-13-0751-01 11 763918 763918 T C TALDO1 Missense_Mutation p.L270P 0.21 deleterious(0.03) probably_damaging(0.994) TCGA-13-0751-01 11 763919 763919 G T TALDO1 Silent p.L270L 0.20 TCGA-13-0751-01 12 7083734 7083734 T C EMG1 Silent p.D96D 0.09 TCGA-13-0751-01 13 23911439 23911439 G A SACS Silent p.I2192I 1.00 TCGA-13-0751-01 13 28124621 28124621 G A LNX2 Missense_Mutation p.H596Y 0.07 tolerated(0.7) possibly_damaging(0.493) TCGA-13-0751-01 13 75869117 75869117 A G TBC1D4 Silent p.H1063H 0.56 TCGA-13-0751-01 14 55241787 55241787 T C SAMD4A Silent p.S617S 0.40 TCGA-13-0751-01 14 74825030 74825030 C T VRTN Missense_Mutation p.A515V 0.43 deleterious(0) probably_damaging(0.997) TCGA-13-0751-01 14 95677167 95677167 C T CLMN Missense_Mutation p.A220T 0.05 deleterious(0) probably_damaging(0.999) TCGA-13-0751-01 15 25492559 25492559 A G SNORD115-42 RNA 0.48 TCGA-13-0751-01 15 26793203 26793203 C T GABRB3 Missense_Mutation p.D387N 0.44 tolerated(0.19) benign(0.224) TCGA-13-0751-01 15 57839702 57839702 C A CGNL1 3'UTR 0.05 TCGA-13-0751-01 15 83826190 83826190 G A HDGFRP3 Missense_Mutation p.R146W 0.43 deleterious(0) benign(0.232) TCGA-13-0751-01 15 89734322 89734322 G T ABHD2 Missense_Mutation p.G313V 0.20 deleterious(0) probably_damaging(0.978) TCGA-13-0751-01 16 2647124 2647124 G C PDPK1 Missense_Mutation p.G468R 0.52 deleterious(0) probably_damaging(0.988) TCGA-13-0751-01 16 30723395 30723395 C G SRCAP Missense_Mutation p.L578V 0.04 unknown(0) TCGA-13-0751-01 17 29226567 29226567 C A TEFM Nonsense_Mutation p.G235* 0.09 TCGA-13-0751-01 17 49337935 49337935 C G UTP18 5'UTR 0.25 TCGA-13-0751-01 17 74057191 74057191 C A SRP68 Missense_Mutation p.G252W 0.04 deleterious(0) probably_damaging(0.994) TCGA-13-0751-01 17 7573984 7573985 - AGGCCTT TP53 Nonsense_Mutation p.L348* 0.85 TCGA-13-0751-01 17 76425216 76425217 - G DNAH17 Frame_Shift_Ins p.N4125Qfs*13 0.07 TCGA-13-0751-01 17 77758863 77758863 G A CBX2 3'UTR 0.29 TCGA-13-0751-01 19 19313002 19313002 C G NR2C2AP Intron 0.22 TCGA-13-0751-01 19 19313053 19313053 C A NR2C2AP Intron 0.41 TCGA-13-0751-01 19 19313312 19313312 C T NR2C2AP Missense_Mutation p.G68S 0.18 deleterious(0) probably_damaging(1) TCGA-13-0751-01 19 19313325 19313325 C A NR2C2AP Missense_Mutation p.Q63H 0.19 tolerated(0.75) benign(0.013) TCGA-13-0751-01 19 19313878 19313878 C T NR2C2AP 5'UTR 0.20 TCGA-13-0751-01 19 20307880 20307880 C T ZNF486 Missense_Mutation p.H121Y 0.33 deleterious(0) benign(0.069) TCGA-13-0751-01 19 36113920 36113920 G T HAUS5 3'UTR 0.04 TCGA-13-0751-01 19 58379832 58379832 G C ZNF814 3'Flank 0.30 TCGA-13-0751-01 1 12884820 12884820 C T PRAMEF11 Missense_Mutation p.A431T 0.15 tolerated(0.47) benign(0.117) TCGA-13-0751-01 1 153947048 153947048 G T JTB 3'UTR 0.18 TCGA-13-0751-01 1 159043085 159043085 A T AIM2 Missense_Mutation p.F69I 0.25 tolerated(0.08) possibly_damaging(0.842) TCGA-13-0751-01 1 16242764 16242764 G A SPEN Missense_Mutation p.G462E 0.07 probably_damaging(0.958) TCGA-13-0751-01 1 16261282 16261282 G A SPEN Silent p.Q2849Q 0.17 TCGA-13-0751-01 1 245530313 245530313 G A KIF26B Missense_Mutation p.D215N 0.14 deleterious(0.02) unknown(0) TCGA-13-0751-01 1 27117350 27117350 C A PIGV Missense_Mutation p.A15E 0.03 deleterious(0) probably_damaging(0.958) TCGA-13-0751-01 1 43232304 43232304 A T LEPRE1 Silent p.L113L 0.54 TCGA-13-0751-01 20 18365034 18365034 G A DZANK1 3'UTR 0.19 TCGA-13-0751-01 20 23731339 23731339 A G CST1 Silent p.Y55Y 0.30 TCGA-13-0751-01 20 31830358 31830358 T C BPIFA1 3'UTR 0.29 TCGA-13-0751-01 22 39064042 39064042 G T CBY1 5'UTR 0.14 TCGA-13-0751-01 2 125262000 125262000 A C CNTNAP5 Silent p.T397T 0.41 TCGA-13-0751-01 2 175619076 175619076 C T CHRNA1 Silent p.T162T 0.22 TCGA-13-0751-01 2 207804354 207804354 T C CPO Silent p.L11L 0.52 TCGA-13-0751-01 2 212289026 212289026 C G ERBB4 Missense_Mutation p.G907A 0.22 deleterious(0) probably_damaging(0.99) TCGA-13-0751-01 2 219498451 219498451 G A PLCD4 Missense_Mutation p.E525K 0.35 deleterious(0) probably_damaging(0.973) TCGA-13-0751-01 2 223158470 223158470 G T PAX3 Intron 0.17 TCGA-13-0751-01 2 54081112 54081112 C A GPR75 Missense_Mutation p.G261V 0.06 tolerated(0.58) benign(0.004) TCGA-13-0751-01 2 71755466 71755466 G T DYSF Missense_Mutation p.G439C 0.05 deleterious(0) probably_damaging(0.999) TCGA-13-0751-01 2 72727056 72727056 T A EXOC6B Missense_Mutation p.I405F 0.29 deleterious(0) possibly_damaging(0.697) TCGA-13-0751-01 2 84517877 84517877 C T FUNDC2P2 RNA 0.17 TCGA-13-0751-01 2 90108798 90108798 T C IGKV6D-41 Silent p.D21D 0.23 TCGA-13-0751-01 3 133661526 133661526 G A SLCO2A1 Silent p.L516L 0.04 TCGA-13-0751-01 3 154147152 154147152 C T GPR149 Missense_Mutation p.V85M 0.19 tolerated(0.12) benign(0.196) TCGA-13-0751-01 3 188592229 188592229 A C LPP Missense_Mutation p.I601L 0.14 deleterious(0) benign(0.403) TCGA-13-0751-01 3 50357666 50357666 C G HYAL2 Silent p.L85L 0.16 TCGA-13-0751-01 5 172197180 172197180 G T DUSP1 Missense_Mutation p.T166N 0.10 deleterious(0.03) benign(0.358) TCGA-13-0751-01 5 68665299 68665299 G C TAF9 Intron 0.42 TCGA-13-0751-01 5 82786200 82786200 C T VCAN Silent p.V118V 0.02 TCGA-13-0751-01 6 136475307 136475307 G T PDE7B Missense_Mutation p.E191D 0.38 deleterious(0.04) possibly_damaging(0.873) TCGA-13-0751-01 6 161587307 161587307 G C AGPAT4 Missense_Mutation p.S107R 0.09 deleterious(0.02) possibly_damaging(0.456) TCGA-13-0751-01 6 24781746 24781746 C A GMNN Missense_Mutation p.H57Q 0.10 tolerated(1) benign(0) TCGA-13-0751-01 6 26021141 26021141 C G HIST1H3A 3'UTR 0.38 TCGA-13-0751-01 6 30229194 30229194 A T HCG17 Intron 0.06 TCGA-13-0751-01 6 33179072 33179072 C T RING1 Missense_Mutation p.P198L 0.38 deleterious(0.01) unknown(0) TCGA-13-0751-01 6 90276810 90276810 A T ANKRD6 Missense_Mutation p.T39S 0.52 tolerated(0.06) possibly_damaging(0.629) TCGA-13-0751-01 6 96988491 96988491 T C UFL1 Silent p.S413S 0.48 TCGA-13-0751-01 7 5765046 5765047 TT - RNF216 Frame_Shift_Del p.K471Mfs*25 0.09 TCGA-13-0751-01 7 89938625 89938625 A C C7orf63 Missense_Mutation p.K867Q 0.41 tolerated(0.54) benign(0.043) TCGA-13-0751-01 7 92195341 92195341 C T FAM133B Missense_Mutation p.R215Q 0.18 tolerated_low_confidence(0.31) unknown(0) TCGA-13-0751-01 7 92825177 92825177 T C HEPACAM2 Silent p.E413E 0.30 TCGA-13-0751-01 8 124693529 124693529 G C ANXA13 Nonsense_Mutation p.S342* 0.03 TCGA-13-0751-01 8 141525307 141525307 C G CHRAC1 Missense_Mutation p.D119E 0.06 tolerated(0.59) unknown(0) TCGA-13-0751-01 9 119249758 119249767 TCAGCAAAAC - ASTN2 Frame_Shift_Del p.S1072Mfs*12 0.37 TCGA-13-0751-01 X 2774571 2774571 A T GYG2 Missense_Mutation p.R205W 0.32 deleterious(0) probably_damaging(0.989) TCGA-13-0757-01 10 100995492 100995492 G A HPSE2 Missense_Mutation p.A23V 0.17 tolerated_low_confidence(0.11) benign(0.001) TCGA-13-0757-01 10 101451181 101451181 G A ENTPD7 Missense_Mutation p.R250Q 0.09 deleterious(0.01) probably_damaging(0.958) TCGA-13-0757-01 10 124742271 124742271 G A PSTK Missense_Mutation p.R80Q 0.05 deleterious(0.01) probably_damaging(0.995) TCGA-13-0757-01 10 49450396 49450396 C A FRMPD2 Splice_Site p.X126_splice 0.32 TCGA-13-0757-01 10 50532132 50532132 C A C10orf71 Nonsense_Mutation p.Y514* 0.24 TCGA-13-0757-01 10 75410675 75410675 A G SYNPO2L Intron 0.17 TCGA-13-0757-01 10 94774020 94774020 G T EXOC6 Missense_Mutation p.R722I 0.16 deleterious(0) probably_damaging(0.941) TCGA-13-0757-01 11 49974862 49974862 T C OR4C13 Silent p.I296I 0.64 TCGA-13-0757-01 11 62299197 62299207 CCACTTCTGGG - AHNAK Frame_Shift_Del p.P895Cfs*7 0.17 TCGA-13-0757-01 11 64085729 64085729 C T PRDX5 Silent p.G14G 0.65 TCGA-13-0757-01 11 65650912 65650912 G C CTSW Intron 0.84 TCGA-13-0757-01 11 66618710 66618710 C T PC Missense_Mutation p.R675H 0.79 deleterious(0) probably_damaging(0.995) TCGA-13-0757-01 11 68174017 68174018 - G LRP5 Frame_Shift_Ins p.C612Vfs*25 0.29 TCGA-13-0757-01 12 118829000 118829000 G T SUDS3 Missense_Mutation p.V144F 0.22 tolerated(0.07) benign(0.361) TCGA-13-0757-01 12 120214545 120214545 C A CIT Silent p.L589L 0.24 TCGA-13-0757-01 12 27850233 27850233 T G REP15 3'UTR 0.10 TCGA-13-0757-01 12 50453711 50453711 G T ASIC1 Missense_Mutation p.V178F 0.17 tolerated(0.06) benign(0.003) TCGA-13-0757-01 12 57861814 57861814 G A GLI1 Missense_Mutation p.R372H 0.18 deleterious(0) probably_damaging(0.997) TCGA-13-0757-01 12 58190306 58190306 G A TSFM Silent p.S327S 0.15 TCGA-13-0757-01 12 78444618 78444618 G A NAV3 Missense_Mutation p.R736Q 0.60 deleterious(0) probably_damaging(0.999) TCGA-13-0757-01 13 102227864 102227864 T G ITGBL1 Missense_Mutation p.C185G 0.03 deleterious(0) probably_damaging(1) TCGA-13-0757-01 13 111806284 111806284 C A ARHGEF7 Nonsense_Mutation p.C66* 0.15 TCGA-13-0757-01 13 21395841 21395841 A C XPO4 Splice_Site p.X391_splice 0.43 TCGA-13-0757-01 14 106111111 106111111 G - IGHG2 Frame_Shift_Del p.P6Hfs*32 0.30 TCGA-13-0757-01 14 79432448 79432448 G A NRXN3 Missense_Mutation p.V453I 0.05 tolerated(0.08) possibly_damaging(0.463) TCGA-13-0757-01 15 43821117 43821118 - G MAP1A Frame_Shift_Ins p.P2485Afs*12 0.10 TCGA-13-0757-01 15 62273640 62273640 A G VPS13C Silent p.D689D 0.23 TCGA-13-0757-01 15 78452409 78452409 C A IDH3A Intron 0.30 TCGA-13-0757-01 16 14345826 14345826 A G MKL2 Silent p.Q787Q 0.29 TCGA-13-0757-01 16 14346279 14346279 C T MKL2 Missense_Mutation p.P825S 0.50 tolerated(0.14) benign(0.026) TCGA-13-0757-01 16 20480994 20480994 G T ACSM2A Silent p.V183V 0.22 TCGA-13-0757-01 16 2979782 2979782 C T FLYWCH1 Silent p.A32A 0.29 TCGA-13-0757-01 16 7703869 7703869 G A RBFOX1 Silent p.A290A 0.33 TCGA-13-0757-01 16 80667028 80667028 C T CDYL2 Missense_Mutation p.R241H 0.52 deleterious(0) probably_damaging(0.998) TCGA-13-0757-01 17 10432189 10432189 T C MYH2 Missense_Mutation p.T1188A 0.29 tolerated(0.1) benign(0.17) TCGA-13-0757-01 17 21092142 21092142 A G DHRS7B Silent p.V246V 0.39 TCGA-13-0757-01 17 36483913 36483913 G C GPR179 Missense_Mutation p.L1847V 0.48 tolerated(0.48) possibly_damaging(0.823) TCGA-13-0757-01 17 37420451 37420451 G A FBXL20 Missense_Mutation p.R394W 0.46 deleterious(0) possibly_damaging(0.696) TCGA-13-0757-01 17 37566512 37566512 G A MED1 Silent p.A654A 0.15 TCGA-13-0757-01 17 4862912 4862912 G C SPAG7 Missense_Mutation p.R201G 0.53 deleterious(0) possibly_damaging(0.894) TCGA-13-0757-01 17 4996063 4996063 C A ZFP3 Missense_Mutation p.Q422K 0.40 tolerated(0.54) benign(0.194) TCGA-13-0757-01 17 7577106 7577106 G A TP53 Missense_Mutation p.P278S 0.86 deleterious(0.03) probably_damaging(1) TCGA-13-0757-01 17 76510915 76510915 C T DNAH17 Missense_Mutation p.E1348K 0.71 benign(0.119) TCGA-13-0757-01 17 7907408 7907408 C T GUCY2D Silent p.S320S 0.32 TCGA-13-0757-01 17 8222093 8222093 G A ARHGEF15 Missense_Mutation p.R633Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-13-0757-01 18 28991321 28991321 C T DSG4 Silent p.A774A 0.35 TCGA-13-0757-01 18 48584584 48584584 T A SMAD4 Missense_Mutation p.F253I 0.07 tolerated(0.27) benign(0.021) TCGA-13-0757-01 18 64235753 64235753 A G CDH19 Silent p.P130P 0.13 TCGA-13-0757-01 18 65178146 65178146 T G DSEL 3'UTR 0.41 TCGA-13-0757-01 18 7034627 7034627 G T LAMA1 Nonsense_Mutation p.Y634* 0.12 TCGA-13-0757-01 18 70417813 70417813 C A NETO1 Missense_Mutation p.S342I 0.15 tolerated(0.12) possibly_damaging(0.462) TCGA-13-0757-01 19 36353488 36353488 G A KIRREL2 Missense_Mutation p.R535H 0.11 tolerated(0.15) benign(0.006) TCGA-13-0757-01 19 37618551 37618551 G A ZNF420 Missense_Mutation p.E220K 0.14 deleterious(0.04) possibly_damaging(0.57) TCGA-13-0757-01 1 11249497 11249497 A G ANGPTL7 5'UTR 0.71 TCGA-13-0757-01 1 113232555 113232555 C T MOV10 Missense_Mutation p.S224L 0.10 tolerated(0.12) benign(0) TCGA-13-0757-01 1 11734816 11734816 G C MAD2L2 3'UTR 0.17 TCGA-13-0757-01 1 160249961 160249961 C T PEX19 Missense_Mutation p.V224I 0.25 tolerated(0.68) benign(0.058) TCGA-13-0757-01 1 161641261 161641261 C T FCGR2B Silent p.C71C 0.14 TCGA-13-0757-01 1 214816409 214816409 G A CENPF Missense_Mutation p.M1576I 0.20 benign(0.085) TCGA-13-0757-01 1 235878638 235878638 C T LYST Missense_Mutation p.R3216H 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-13-0757-01 1 243327609 243327609 G A CEP170 Missense_Mutation p.T1218I 0.26 deleterious(0.05) benign(0.082) TCGA-13-0757-01 1 248637114 248637114 G A OR2T3 Missense_Mutation p.V155I 0.28 tolerated(0.33) benign(0.024) TCGA-13-0757-01 1 36181887 36181888 - C C1orf216 Frame_Shift_Ins p.Q13Pfs*31 0.20 TCGA-13-0757-01 1 38155294 38155294 T C C1orf109 Missense_Mutation p.K87E 0.72 tolerated(0.11) benign(0.423) TCGA-13-0757-01 1 43911903 43911903 C A SZT2 Silent p.G2933G 0.06 TCGA-13-0757-01 20 31652516 31652516 G C BPIFB3 Missense_Mutation p.K263N 0.06 tolerated(0.49) probably_damaging(0.957) TCGA-13-0757-01 20 31975332 31975332 C A CDK5RAP1 Missense_Mutation p.M184I 0.15 deleterious(0) probably_damaging(0.999) TCGA-13-0757-01 21 47666894 47666894 G A MCM3AP Intron 0.30 TCGA-13-0757-01 22 37770311 37770311 G C ELFN2 Missense_Mutation p.R422G 0.35 deleterious(0) possibly_damaging(0.895) TCGA-13-0757-01 22 39826029 39826029 G T TAB1 Silent p.P439P 0.21 TCGA-13-0757-01 2 141108444 141108444 A C LRP1B Missense_Mutation p.S3938R 0.39 benign(0.307) TCGA-13-0757-01 2 179643803 179643803 T C TTN Missense_Mutation p.R1336G 0.30 TCGA-13-0757-01 2 179659830 179659830 G T TTN Missense_Mutation p.S355Y 0.19 TCGA-13-0757-01 2 196749476 196749476 G A DNAH7 Nonsense_Mutation p.R1866* 0.11 TCGA-13-0757-01 2 220379872 220379873 - C ASIC4 Frame_Shift_Ins p.K272Qfs*17 0.21 TCGA-13-0757-01 2 230282841 230282841 C T DNER Missense_Mutation p.C531Y 0.33 deleterious(0) probably_damaging(1) TCGA-13-0757-01 2 272228 272228 G A ACP1 Missense_Mutation p.V52M 0.09 deleterious(0) benign(0.42) TCGA-13-0757-01 2 62099426 62099426 G T CCT4 Missense_Mutation p.P428T 0.19 deleterious(0.01) probably_damaging(0.927) TCGA-13-0757-01 2 87042747 87042747 A G CD8B Missense_Mutation p.W239R 0.28 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-13-0757-01 3 122288409 122288410 TT - DTX3L Frame_Shift_Del p.L492Dfs*33 0.21 TCGA-13-0757-01 3 132361647 132361647 C A ACAD11 Splice_Site p.X84_splice 0.03 TCGA-13-0757-01 3 14567076 14567076 T A GRIP2 RNA 0.36 TCGA-13-0757-01 3 179051204 179051204 A G ZNF639 Missense_Mutation p.Y151C 0.40 tolerated(0.07) probably_damaging(0.996) TCGA-13-0757-01 3 20156380 20156380 G A KAT2B Silent p.L350L 0.19 TCGA-13-0757-01 3 42730128 42730128 C T KLHL40 Missense_Mutation p.P447L 0.28 deleterious(0.01) benign(0.356) TCGA-13-0757-01 3 50332165 50332165 C T HYAL3 Missense_Mutation p.R290Q 0.17 tolerated(0.37) benign(0.06) TCGA-13-0757-01 3 50363829 50363829 G A TUSC2 Missense_Mutation p.R76W 0.14 tolerated(0.07) benign(0.003) TCGA-13-0757-01 3 95374340 95374340 G A MTHFD2P1 RNA 0.25 TCGA-13-0757-01 4 84519202 84519202 A T AGPAT9 Splice_Site p.X333_splice 0.34 TCGA-13-0757-01 4 87809396 87809396 T G C4orf36 Missense_Mutation p.K33T 0.33 deleterious(0) possibly_damaging(0.859) TCGA-13-0757-01 5 149919774 149919774 T G NDST1 Missense_Mutation p.L566W 0.33 deleterious(0) probably_damaging(0.994) TCGA-13-0757-01 5 24491777 24491777 A C CDH10 Missense_Mutation p.M595R 0.12 deleterious(0.04) possibly_damaging(0.599) TCGA-13-0757-01 5 35965654 35965654 T C UGT3A1 Missense_Mutation p.K226R 0.11 tolerated(0.25) benign(0.074) TCGA-13-0757-01 5 43280407 43280407 A G NIM1K Missense_Mutation p.E296G 0.14 tolerated(0.38) benign(0) TCGA-13-0757-01 5 434665 434665 C T AHRR Missense_Mutation p.R626C 0.75 tolerated(0.18) possibly_damaging(0.729) TCGA-13-0757-01 5 52780984 52780984 C T FST Silent p.S293S 0.19 TCGA-13-0757-01 5 64875440 64875440 G C PPWD1 Missense_Mutation p.M450I 0.34 tolerated(0.18) benign(0.008) TCGA-13-0757-01 6 130370957 130370957 C G L3MBTL3 Missense_Mutation p.P91A 0.21 tolerated(0.37) benign(0.005) TCGA-13-0757-01 6 24489644 24489644 T C GPLD1 Missense_Mutation p.I32M 0.07 deleterious(0) probably_damaging(0.998) TCGA-13-0757-01 6 31593326 31593326 G T PRRC2A Missense_Mutation p.G233C 0.23 unknown(0) TCGA-13-0757-01 6 53516934 53516934 C G KLHL31 Missense_Mutation p.R456P 0.27 deleterious(0.02) probably_damaging(1) TCGA-13-0757-01 6 7226808 7226808 G C RREB1 Missense_Mutation p.Q272H 0.03 deleterious(0.02) benign(0.382) TCGA-13-0757-01 7 100676764 100676764 A T MUC17 Silent p.P689P 0.17 TCGA-13-0757-01 7 121726223 121726223 A G AASS Missense_Mutation p.V676A 0.10 deleterious(0.03) benign(0.032) TCGA-13-0757-01 7 122338179 122338179 G C RNF133 Missense_Mutation p.P265R 0.12 deleterious(0) possibly_damaging(0.717) TCGA-13-0757-01 7 132169636 132169636 G T PLXNA4 Intron 0.04 TCGA-13-0757-01 7 140159684 140159684 T C MKRN1 Missense_Mutation p.T123A 0.18 tolerated(0.76) benign(0.003) TCGA-13-0757-01 7 34118649 34118649 C T BMPER Missense_Mutation p.S420L 0.20 deleterious(0) probably_damaging(0.919) TCGA-13-0757-01 7 38402936 38402936 C G TRGV2 5'UTR 0.15 TCGA-13-0757-01 7 44573059 44573059 G T NPC1L1 Missense_Mutation p.L794M 0.06 deleterious(0.03) probably_damaging(0.934) TCGA-13-0757-01 8 105025739 105025739 G A RIMS2 Silent p.E1038E 0.33 TCGA-13-0757-01 8 12878814 12878814 C T KIAA1456 Missense_Mutation p.S209L 0.43 deleterious(0.03) benign(0.218) TCGA-13-0757-01 8 17830053 17830053 C T PCM1 Missense_Mutation p.P1267L 0.04 deleterious(0.01) possibly_damaging(0.732) TCGA-13-0757-01 8 22021053 22021053 C T SFTPC Silent p.N143N 0.29 TCGA-13-0757-01 8 35631901 35631901 T C UNC5D Missense_Mutation p.Y855H 0.10 tolerated(0.32) benign(0.002) TCGA-13-0757-01 8 36694330 36694330 C T KCNU1 Missense_Mutation p.P462L 0.05 deleterious(0) probably_damaging(1) TCGA-13-0757-01 8 72983947 72983947 T C TRPA1 Silent p.E89E 0.09 TCGA-13-0757-01 8 7308373 7308373 C A SPAG11B Silent p.G88G 0.63 TCGA-13-0757-01 8 7718217 7718217 G T SPAG11A Silent p.G88G 0.08 TCGA-13-0757-01 9 136132843 136132843 G T RP11-430N14.4 5'Flank 0.39 TCGA-13-0757-01 9 27950433 27950433 T C LINGO2 Silent p.S79S 0.20 TCGA-13-0757-01 9 34290239 34290239 A C KIF24 Missense_Mutation p.F354V 0.03 tolerated(0.08) benign(0.063) TCGA-13-0757-01 9 35738858 35738858 T C GBA2 Missense_Mutation p.D613G 0.18 deleterious(0.01) probably_damaging(0.974) TCGA-13-0757-01 9 79324917 79324917 G C PRUNE2 Missense_Mutation p.T758R 0.22 deleterious(0) possibly_damaging(0.894) TCGA-13-0757-01 X 103041495 103041495 G A PLP1 Missense_Mutation p.R98K 0.33 tolerated(1) benign(0.003) TCGA-13-0757-01 X 107979141 107979141 C T IRS4 Missense_Mutation p.R145Q 0.50 deleterious(0.01) probably_damaging(0.959) TCGA-13-0757-01 X 123657236 123657236 C G TENM1 Missense_Mutation p.G1004A 0.46 deleterious(0.05) possibly_damaging(0.709) TCGA-13-0757-01 X 138882219 138882219 C A ATP11C Missense_Mutation p.R240M 0.05 deleterious(0.02) probably_damaging(0.996) TCGA-13-0757-01 X 54012191 54012191 C T PHF8 Intron 0.07 TCGA-13-0757-01 X 54959828 54959828 G T PFKFB1 3'UTR 0.12 TCGA-13-1477-01 10 121586924 121586924 C T INPP5F Missense_Mutation p.P1011S 0.02 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-13-1477-01 10 127429185 127429185 C T EDRF1 Missense_Mutation p.A712V 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-13-1477-01 10 50690857 50690857 A G ERCC6 Missense_Mutation p.L682P 0.04 deleterious(0) probably_damaging(0.999) TCGA-13-1477-01 10 50835779 50835779 G A CHAT Silent p.L353L 0.03 TCGA-13-1477-01 10 5789063 5789063 G A FAM208B Missense_Mutation p.G1227R 0.37 tolerated(0.75) benign(0.001) TCGA-13-1477-01 10 74034674 74034675 - G DDIT4 Frame_Shift_Ins p.A145Gfs*50 0.17 TCGA-13-1477-01 10 88768369 88768369 C T RP11-96C23.10 3'Flank 0.03 TCGA-13-1477-01 10 91065905 91065905 A T IFIT2 Missense_Mutation p.K64N 0.05 tolerated(0.16) benign(0.229) TCGA-13-1477-01 10 95111325 95111325 T C MYOF Missense_Mutation p.K1223E 0.04 tolerated(0.31) probably_damaging(0.928) TCGA-13-1477-01 10 95661104 95661104 A G SLC35G1 Missense_Mutation p.T319A 0.03 deleterious(0.04) probably_damaging(0.966) TCGA-13-1477-01 10 97917846 97917846 G T ZNF518A RNA 0.06 TCGA-13-1477-01 11 110327648 110327648 G T FDX1 Missense_Mutation p.C106F 0.02 deleterious(0) probably_damaging(1) TCGA-13-1477-01 11 112103939 112103939 C A PTS Nonsense_Mutation p.Y99* 0.03 TCGA-13-1477-01 11 117352737 117352737 C T DSCAML1 Missense_Mutation p.V894I 0.24 tolerated(0.34) benign(0.065) TCGA-13-1477-01 11 117870362 117870362 G A IL10RA 3'UTR 0.08 TCGA-13-1477-01 11 120998985 120998986 - A TECTA Frame_Shift_Ins p.R767Qfs*92 0.20 TCGA-13-1477-01 11 123624939 123624939 C T OR6X1 Silent p.L96L 0.04 TCGA-13-1477-01 11 134151270 134151270 G T GLB1L3 Splice_Site p.X121_splice 0.07 TCGA-13-1477-01 11 62123818 62123818 C T ASRGL1 Missense_Mutation p.T71I 0.04 tolerated(0.48) benign(0.002) TCGA-13-1477-01 11 6220826 6220826 T A OR52W1 Missense_Mutation p.C125S 0.05 deleterious(0) benign(0.001) TCGA-13-1477-01 11 63256381 63256381 G T HRASLS5 Missense_Mutation p.P113T 0.04 tolerated(0.07) benign(0.231) TCGA-13-1477-01 11 63662756 63662756 C A MARK2 Silent p.G60G 0.04 TCGA-13-1477-01 11 64522950 64522950 G A PYGM Silent p.A247A 0.09 TCGA-13-1477-01 11 65144062 65144062 C T SLC25A45 Missense_Mutation p.R228Q 0.04 deleterious(0) probably_damaging(1) TCGA-13-1477-01 11 65349367 65349367 A G EHBP1L1 Silent p.S408S 0.20 TCGA-13-1477-01 11 65767549 65767549 G T EIF1AD Nonsense_Mutation p.Y57* 0.07 TCGA-13-1477-01 11 67223857 67223857 G A CABP4 Missense_Mutation p.G162D 0.05 deleterious(0) probably_damaging(0.995) TCGA-13-1477-01 11 82642927 82642927 C T C11orf82 Nonsense_Mutation p.Q183* 0.03 TCGA-13-1477-01 11 86108694 86108694 C T CCDC81 Missense_Mutation p.P223S 0.05 tolerated(0.08) benign(0.021) TCGA-13-1477-01 11 8717998 8717998 C G ST5 Missense_Mutation p.E1090Q 0.09 deleterious(0) probably_damaging(0.998) TCGA-13-1477-01 11 93800864 93800864 C A HEPHL1 Silent p.A337A 0.05 TCGA-13-1477-01 12 132212921 132212921 C T SFSWAP Silent p.H343H 0.03 TCGA-13-1477-01 12 133312013 133312014 - T ANKLE2 Frame_Shift_Ins p.R560Kfs*4 0.13 TCGA-13-1477-01 12 14959471 14959471 C A SMCO3 Silent p.G48G 0.05 TCGA-13-1477-01 12 21733447 21733447 G T GYS2 Silent p.I44I 0.07 TCGA-13-1477-01 12 42860028 42860028 G T PRICKLE1 Missense_Mutation p.A248E 0.04 deleterious(0) probably_damaging(0.99) TCGA-13-1477-01 12 47471196 47471196 T A AMIGO2 3'UTR 0.12 TCGA-13-1477-01 12 4919960 4919960 C T KCNA6 Silent p.L251L 0.03 TCGA-13-1477-01 12 57554742 57554742 G A LRP1 Silent p.A682A 0.06 TCGA-13-1477-01 12 6666525 6666525 C T NOP2 Silent p.E724E 0.06 TCGA-13-1477-01 12 90003821 90003821 C T ATP2B1 Splice_Site p.X779_splice 0.04 TCGA-13-1477-01 13 113975996 113975996 A G LAMP1 Silent p.K356K 0.07 TCGA-13-1477-01 13 75900343 75900343 C A TBC1D4 Nonsense_Mutation p.E675* 0.07 TCGA-13-1477-01 13 86368767 86368767 G A SLITRK6 Missense_Mutation p.A626V 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-13-1477-01 14 102467603 102467603 A G DYNC1H1 Missense_Mutation p.D1436G 0.04 possibly_damaging(0.521) TCGA-13-1477-01 14 105418316 105418316 C T AHNAK2 Missense_Mutation p.A1158T 0.09 benign(0.019) TCGA-13-1477-01 14 22133790 22133790 G A OR4E2 Missense_Mutation p.R165H 0.03 tolerated(0.2) probably_damaging(0.947) TCGA-13-1477-01 14 24885024 24885024 G A NYNRIN Missense_Mutation p.A1357T 0.09 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-13-1477-01 14 50195672 50195672 C T KLHDC1 Missense_Mutation p.A199V 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-13-1477-01 14 64430668 64430676 CAGAAGTTG - SYNE2 In_Frame_Del p.Q314_L316del 0.30 TCGA-13-1477-01 14 69352292 69352292 C A ACTN1 Missense_Mutation p.G412V 0.11 deleterious(0) probably_damaging(1) TCGA-13-1477-01 14 74824922 74824922 C T VRTN Missense_Mutation p.A479V 0.25 tolerated(0.51) benign(0) TCGA-13-1477-01 14 75904682 75904683 - C JDP2 Frame_Shift_Ins p.L33Pfs*18 0.10 TCGA-13-1477-01 14 95677055 95677055 G A CLMN Missense_Mutation p.A257V 0.04 tolerated(0.12) benign(0.117) TCGA-13-1477-01 14 95999894 95999894 G T GLRX5 5'Flank 0.07 TCGA-13-1477-01 15 23932097 23932097 G T NDN Missense_Mutation p.P90T 0.21 tolerated(0.78) probably_damaging(0.997) TCGA-13-1477-01 15 31294686 31294686 G T TRPM1 Missense_Mutation p.T1423K 0.24 tolerated_low_confidence(0.51) benign(0.05) TCGA-13-1477-01 15 43023915 43023915 G A CDAN1 Missense_Mutation p.R548W 0.05 deleterious(0) probably_damaging(0.995) TCGA-13-1477-01 15 55643007 55643007 C T PIGB Missense_Mutation p.L412F 0.07 deleterious(0.05) probably_damaging(0.999) TCGA-13-1477-01 15 63054621 63054621 G A TLN2 Missense_Mutation p.D1644N 0.08 deleterious(0) benign(0.162) TCGA-13-1477-01 15 93492342 93492342 G A CHD2 Intron 0.03 TCGA-13-1477-01 15 94943178 94943178 C T MCTP2 Missense_Mutation p.P640L 0.06 deleterious(0) probably_damaging(0.947) TCGA-13-1477-01 16 10729687 10729687 T C TEKT5 Missense_Mutation p.Q392R 0.02 deleterious(0) possibly_damaging(0.7) TCGA-13-1477-01 16 23647080 23647080 C A PALB2 Nonsense_Mutation p.E263* 0.14 TCGA-13-1477-01 16 28847995 28847995 G T ATXN2L Intron 0.63 TCGA-13-1477-01 16 3832826 3832826 G A CREBBP Missense_Mutation p.P478S 0.06 probably_damaging(0.993) TCGA-13-1477-01 16 3843391 3843391 G A CREBBP Silent p.C404C 0.04 TCGA-13-1477-01 16 53493465 53493465 C T RBL2 Missense_Mutation p.R428C 0.03 deleterious(0) probably_damaging(0.982) TCGA-13-1477-01 17 16456403 16456403 A G ZNF287 Silent p.H351H 0.06 TCGA-13-1477-01 17 27425406 27425406 G A MYO18A Silent p.L1280L 0.16 TCGA-13-1477-01 17 36523882 36523882 A G SOCS7 Missense_Mutation p.S437G 0.06 deleterious(0) probably_damaging(0.995) TCGA-13-1477-01 17 36700069 36700069 C T SRCIN1 Missense_Mutation p.A1136T 0.11 deleterious(0.01) benign(0.088) TCGA-13-1477-01 17 38032949 38032949 G A ZPBP2 Missense_Mutation p.A302T 0.04 deleterious(0) benign(0.143) TCGA-13-1477-01 17 39140374 39140374 C A KRT40 Missense_Mutation p.R51M 0.03 tolerated(0.08) benign(0.436) TCGA-13-1477-01 17 40951091 40951091 C T CNTD1 Silent p.D2D 0.18 TCGA-13-1477-01 17 41832764 41832764 C A SOST Silent p.R196R 0.05 TCGA-13-1477-01 17 42427901 42427902 - C GRN Frame_Shift_Ins p.L187Pfs*11 0.20 TCGA-13-1477-01 17 43332918 43332918 C T SPATA32 Missense_Mutation p.D211N 0.10 tolerated(0.24) benign(0) TCGA-13-1477-01 17 44144037 44144037 G T KANSL1 Missense_Mutation p.H572N 0.03 tolerated(0.31) benign(0.295) TCGA-13-1477-01 17 45299108 45299108 G A MYL4 Missense_Mutation p.R125H 0.18 deleterious(0) possibly_damaging(0.72) TCGA-13-1477-01 17 73956389 73956389 G T ACOX1 Missense_Mutation p.H113N 0.09 tolerated(1) benign(0) TCGA-13-1477-01 17 7479928 7479928 G A EIF4A1 Silent p.V144V 0.10 TCGA-13-1477-01 17 78348281 78348281 C T RNF213 Silent p.G4322G 0.07 TCGA-13-1477-01 17 78704493 78704493 A G RPTOR Missense_Mutation p.E214G 0.04 deleterious(0) probably_damaging(0.917) TCGA-13-1477-01 17 78921060 78921060 T G RPTOR Missense_Mutation p.D1058E 0.30 tolerated(0.24) possibly_damaging(0.48) TCGA-13-1477-01 17 8044486 8044486 G A PER1 Missense_Mutation p.A1258V 0.04 tolerated_low_confidence(0.19) benign(0.001) TCGA-13-1477-01 17 9615361 9615361 G C USP43 Silent p.L749L 0.12 TCGA-13-1477-01 18 22057221 22057221 A T HRH4 Missense_Mutation p.R290W 0.03 deleterious(0) probably_damaging(0.965) TCGA-13-1477-01 18 42531255 42531255 G T SETBP1 Missense_Mutation p.K650N 0.06 tolerated(0.05) probably_damaging(0.997) TCGA-13-1477-01 18 61030097 61030097 G A KDSR Missense_Mutation p.T38I 0.05 deleterious(0) probably_damaging(1) TCGA-13-1477-01 18 61323100 61323100 C T SERPINB3 Missense_Mutation p.G322S 0.03 tolerated(0.06) benign(0.194) TCGA-13-1477-01 19 16910702 16910702 G T NWD1 Missense_Mutation p.W1155C 0.42 deleterious(0) probably_damaging(1) TCGA-13-1477-01 19 17750681 17750681 T A UNC13A Missense_Mutation p.N942Y 0.33 deleterious(0) benign(0.012) TCGA-13-1477-01 19 17836674 17836674 C T MAP1S Nonsense_Mutation p.Q161* 0.03 TCGA-13-1477-01 19 33110405 33110405 A G ANKRD27 Missense_Mutation p.S628P 0.05 tolerated(0.12) benign(0.307) TCGA-13-1477-01 19 33623087 33623087 G A WDR88 Silent p.P4P 0.12 TCGA-13-1477-01 19 43698698 43698698 G A PSG4 Missense_Mutation p.S346L 0.04 tolerated(0.18) possibly_damaging(0.84) TCGA-13-1477-01 19 44418225 44418225 G A ZNF45 Nonsense_Mutation p.Q455* 0.04 TCGA-13-1477-01 19 44661740 44661740 C A ZNF234 Missense_Mutation p.A524D 0.09 tolerated(0.06) probably_damaging(0.963) TCGA-13-1477-01 19 44933537 44933537 G A ZNF229 Silent p.S473S 0.04 TCGA-13-1477-01 19 47233998 47233998 C T STRN4 Silent p.Q290Q 0.09 TCGA-13-1477-01 19 49110399 49110399 C T SPACA4 Missense_Mutation p.P55L 0.04 tolerated(0.35) possibly_damaging(0.634) TCGA-13-1477-01 19 49481250 49481250 A G GYS1 Silent p.L413L 0.05 TCGA-13-1477-01 19 50910264 50910264 C T POLD1 Missense_Mutation p.R507C 0.06 deleterious(0) probably_damaging(1) TCGA-13-1477-01 19 51582131 51582131 T C KLK14 Missense_Mutation p.T198A 0.03 tolerated(0.84) benign(0.001) TCGA-13-1477-01 19 56363710 56363710 C T NLRP4 Silent p.V88V 0.05 TCGA-13-1477-01 19 56370018 56370018 G A NLRP4 Missense_Mutation p.R420Q 0.49 deleterious(0.03) benign(0.079) TCGA-13-1477-01 19 57835166 57835166 C T ZNF543 Silent p.L45L 0.07 TCGA-13-1477-01 19 8315966 8315966 G A CERS4 Silent p.L2L 0.25 TCGA-13-1477-01 19 9057662 9057662 G C MUC16 Silent p.S9928S 0.10 TCGA-13-1477-01 19 9064252 9064252 A T MUC16 Missense_Mutation p.L7732M 0.02 unknown(0) TCGA-13-1477-01 19 9324610 9324610 C A OR7D4 Nonsense_Mutation p.E302* 0.04 TCGA-13-1477-01 1 100818450 100818451 - G CDC14A 5'UTR 0.14 TCGA-13-1477-01 1 110230529 110230529 G A GSTM1 Missense_Mutation p.G12R 0.18 deleterious(0) probably_damaging(1) TCGA-13-1477-01 1 11087065 11087065 C T MASP2 Silent p.R646R 0.05 TCGA-13-1477-01 1 110923684 110923684 G A SLC16A4 Missense_Mutation p.A149V 0.05 deleterious(0.02) probably_damaging(0.951) TCGA-13-1477-01 1 117618041 117618041 G A TTF2 Missense_Mutation p.G279R 0.03 tolerated(0.38) benign(0.01) TCGA-13-1477-01 1 118550681 118550681 G C SPAG17 Missense_Mutation p.Q1525E 0.04 deleterious(0) benign(0.389) TCGA-13-1477-01 1 12071607 12071607 G A MFN2 Silent p.L753L 0.04 TCGA-13-1477-01 1 151133466 151133466 C T LYSMD1 Silent p.L192L 0.05 TCGA-13-1477-01 1 152976093 152976093 A T SPRR3 3'UTR 0.09 TCGA-13-1477-01 1 153732823 153732823 C A INTS3 Missense_Mutation p.P425H 0.04 deleterious(0.01) probably_damaging(0.98) TCGA-13-1477-01 1 154744626 154744626 G A KCNN3 Missense_Mutation p.H425Y 0.09 deleterious(0.01) probably_damaging(0.986) TCGA-13-1477-01 1 155932503 155932503 C T ARHGEF2 Missense_Mutation p.G328S 0.06 deleterious(0) possibly_damaging(0.741) TCGA-13-1477-01 1 156779479 156779479 G A SH2D2A Nonsense_Mutation p.Q240* 0.05 TCGA-13-1477-01 1 157514083 157514083 A G FCRL5 Silent p.S271S 0.03 TCGA-13-1477-01 1 1575774 1575775 - CA CDK11B Frame_Shift_Ins p.E375Vfs*18 0.36 TCGA-13-1477-01 1 158323820 158323820 T C CD1E Silent p.P14P 0.03 TCGA-13-1477-01 1 158651406 158651406 G A SPTA1 Silent p.L148L 0.03 TCGA-13-1477-01 1 160124966 160124966 G T ATP1A4 Missense_Mutation p.W113C 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-13-1477-01 1 161022582 161022582 C T ARHGAP30 Missense_Mutation p.E224K 0.19 tolerated(0.07) possibly_damaging(0.786) TCGA-13-1477-01 1 175063191 175063191 G A TNN Missense_Mutation p.D464N 0.12 tolerated(0.25) benign(0.011) TCGA-13-1477-01 1 180243585 180243585 A G LHX4 Silent p.V348V 0.06 TCGA-13-1477-01 1 19490910 19490910 C T UBR4 Missense_Mutation p.V1513I 0.06 possibly_damaging(0.713) TCGA-13-1477-01 1 197326063 197326063 G A CRB1 Missense_Mutation p.G364E 0.03 deleterious(0.04) possibly_damaging(0.521) TCGA-13-1477-01 1 201191907 201191907 G T IGFN1 Missense_Mutation p.L3414F 0.04 benign(0.171) TCGA-13-1477-01 1 226026420 226026420 T A EPHX1 Missense_Mutation p.L144M 0.03 deleterious(0.02) probably_damaging(0.996) TCGA-13-1477-01 1 231556920 231556920 G A EGLN1 Nonsense_Mutation p.Q239* 0.05 TCGA-13-1477-01 1 23191391 23191391 C T EPHB2 Missense_Mutation p.A330V 0.12 deleterious(0) benign(0.062) TCGA-13-1477-01 1 232577544 232577544 C T SIPA1L2 Missense_Mutation p.E1170K 0.05 tolerated(0.06) benign(0.14) TCGA-13-1477-01 1 237494210 237494210 T C RYR2 Silent p.F67F 0.26 TCGA-13-1477-01 1 26885316 26885316 C T RPS6KA1 Missense_Mutation p.P377L 0.09 deleterious(0.01) possibly_damaging(0.486) TCGA-13-1477-01 1 27941037 27941037 C T FGR Missense_Mutation p.A385T 0.05 deleterious(0) probably_damaging(0.999) TCGA-13-1477-01 1 35250837 35250837 G A GJB3 Missense_Mutation p.M158I 0.04 tolerated(0.07) benign(0.009) TCGA-13-1477-01 1 36068822 36068822 C T PSMB2 3'UTR 0.65 TCGA-13-1477-01 1 36068823 36068823 C T PSMB2 3'UTR 0.62 TCGA-13-1477-01 1 43613595 43613595 G T FAM183A 5'Flank 0.07 TCGA-13-1477-01 1 43916502 43916502 C A SZT2 3'UTR 0.06 TCGA-13-1477-01 1 55224780 55224780 G A PARS2 Missense_Mutation p.R19C 0.10 tolerated_low_confidence(0.14) benign(0) TCGA-13-1477-01 1 67792515 67792515 C A IL12RB2 Nonsense_Mutation p.Y154* 0.09 TCGA-13-1477-01 1 89448995 89448995 C T RBMXL1 Missense_Mutation p.R172H 0.10 tolerated(0.1) benign(0.022) TCGA-13-1477-01 1 89889975 89889975 G T GBP1P1 RNA 0.06 TCGA-13-1477-01 20 1426411 1426411 T C NSFL1C Missense_Mutation p.S286G 0.03 tolerated(0.06) benign(0.191) TCGA-13-1477-01 20 25059514 25059514 G A VSX1 Missense_Mutation p.A193V 0.03 deleterious(0) possibly_damaging(0.643) TCGA-13-1477-01 20 40827936 40827936 C T PTPRT Missense_Mutation p.S812N 0.03 deleterious(0.03) benign(0.105) TCGA-13-1477-01 20 44515304 44515304 C T SPATA25 Nonsense_Mutation p.W179* 0.10 TCGA-13-1477-01 20 47582484 47582484 C A ARFGEF2 Missense_Mutation p.P328H 0.07 deleterious(0.02) benign(0.139) TCGA-13-1477-01 21 34932393 34932393 T C SON Intron 0.05 TCGA-13-1477-01 21 37609660 37609660 C T DOPEY2 Missense_Mutation p.T908M 0.46 deleterious(0) possibly_damaging(0.816) TCGA-13-1477-01 21 47663422 47663422 G A MCM3AP Silent p.H1751H 0.05 TCGA-13-1477-01 21 48064384 48064384 G A PRMT2 Missense_Mutation p.G104D 0.04 tolerated(0.25) benign(0.03) TCGA-13-1477-01 22 17451048 17451048 A G GAB4 Missense_Mutation p.F241S 0.07 deleterious_low_confidence(0.04) possibly_damaging(0.665) TCGA-13-1477-01 22 21133741 21133742 - A SERPIND1 Frame_Shift_Ins p.N49Kfs*40 0.09 TCGA-13-1477-01 22 31335957 31335957 G A MORC2 Missense_Mutation p.R264W 0.10 deleterious(0) benign(0.046) TCGA-13-1477-01 22 32791089 32791089 C T RTCB Missense_Mutation p.R368Q 0.04 tolerated(0.17) benign(0.01) TCGA-13-1477-01 2 113343638 113343638 G A CHCHD5 Nonsense_Mutation p.W30* 0.04 TCGA-13-1477-01 2 135028001 135028001 C A MGAT5 Missense_Mutation p.R96S 0.05 deleterious(0.05) possibly_damaging(0.796) TCGA-13-1477-01 2 160080854 160080854 C A TANC1 Missense_Mutation p.L1264I 0.08 deleterious(0) probably_damaging(0.999) TCGA-13-1477-01 2 163216733 163216733 C A GCA Missense_Mutation p.Q212K 0.50 tolerated(0.06) possibly_damaging(0.68) TCGA-13-1477-01 2 170097690 170097690 G T LRP2 Missense_Mutation p.H1285N 0.07 benign(0.103) TCGA-13-1477-01 2 170103991 170103991 G C LRP2 Silent p.A935A 0.23 TCGA-13-1477-01 2 170103992 170103992 G A LRP2 Missense_Mutation p.A935V 0.23 possibly_damaging(0.623) TCGA-13-1477-01 2 170103993 170103993 C G LRP2 Missense_Mutation p.A935P 0.22 possibly_damaging(0.775) TCGA-13-1477-01 2 173460625 173460625 C T PDK1 Silent p.T413T 0.05 TCGA-13-1477-01 2 217724691 217724691 C T TNP1 Missense_Mutation p.G23R 0.04 deleterious_low_confidence(0) probably_damaging(1) TCGA-13-1477-01 2 219399421 219399421 T A USP37 Missense_Mutation p.K230M 0.12 deleterious(0.05) benign(0.156) TCGA-13-1477-01 2 231742247 231742247 C A ITM2C Missense_Mutation p.R232S 0.19 deleterious(0.04) possibly_damaging(0.868) TCGA-13-1477-01 2 234357877 234357877 C A DGKD Silent p.G581G 0.07 TCGA-13-1477-01 2 25964840 25964840 C G ASXL2 3'UTR 0.07 TCGA-13-1477-01 2 27291556 27291556 G T AGBL5 Missense_Mutation p.G767W 0.34 deleterious_low_confidence(0) probably_damaging(1) TCGA-13-1477-01 2 32875203 32875203 G A TTC27 Silent p.L181L 0.06 TCGA-13-1477-01 2 64199339 64199339 G T VPS54 Missense_Mutation p.P140T 0.51 tolerated(0.58) benign(0.035) TCGA-13-1477-01 2 71892341 71892341 C A DYSF Missense_Mutation p.H1742N 0.03 tolerated(0.14) benign(0.003) TCGA-13-1477-01 2 71906220 71906220 A G DYSF Missense_Mutation p.K1973R 0.06 tolerated(0.62) benign(0.003) TCGA-13-1477-01 2 87013088 87013088 C A CD8A Silent p.V221V 0.04 TCGA-13-1477-01 2 88879037 88879037 T A EIF2AK3 Missense_Mutation p.R629W 0.03 deleterious(0) probably_damaging(0.995) TCGA-13-1477-01 2 90121838 90121838 G A IGKV1D-17 Missense_Mutation p.G19D 0.03 tolerated(0.1) benign(0.07) TCGA-13-1477-01 2 99787893 99787893 C T MITD1 Splice_Site p.X131_splice 0.04 TCGA-13-1477-01 3 111432880 111432880 G A PLCXD2 Silent p.R257R 0.06 TCGA-13-1477-01 3 143691332 143691332 A G C3orf58 Missense_Mutation p.N53S 0.60 tolerated(0.12) benign(0.08) TCGA-13-1477-01 3 154145343 154145343 C A GPR149 Missense_Mutation p.R379M 0.04 deleterious(0) benign(0.332) TCGA-13-1477-01 3 155633862 155633862 G A GMPS Missense_Mutation p.A365T 0.04 deleterious(0) probably_damaging(0.92) TCGA-13-1477-01 3 15626766 15626766 C T HACL1 Silent p.V181V 0.07 TCGA-13-1477-01 3 161221427 161221427 T C OTOL1 Silent p.T377T 0.05 TCGA-13-1477-01 3 16475431 16475431 G A RFTN1 Nonsense_Mutation p.Q87* 0.05 TCGA-13-1477-01 3 172080533 172080533 C A FNDC3B Missense_Mutation p.A969D 0.12 tolerated(0.13) benign(0.367) TCGA-13-1477-01 3 183699573 183699573 A G ABCC5 Silent p.T363T 0.43 TCGA-13-1477-01 3 18393583 18393583 C G SATB1 Missense_Mutation p.Q560H 0.03 deleterious(0) probably_damaging(0.998) TCGA-13-1477-01 3 196736671 196736671 C A MFI2 Missense_Mutation p.S448I 0.10 deleterious(0.03) possibly_damaging(0.866) TCGA-13-1477-01 3 38518782 38518782 T C ACVR2B Silent p.S19S 0.07 TCGA-13-1477-01 3 38597243 38597244 - C SCN5A Frame_Shift_Ins p.Q1483Pfs*49 0.09 TCGA-13-1477-01 3 48573838 48573838 C T PFKFB4 Missense_Mutation p.A231T 0.06 benign(0.043) TCGA-13-1477-01 3 48663337 48663337 C T SLC26A6 3'UTR 0.64 TCGA-13-1477-01 3 58255125 58255125 C T ABHD6 Silent p.D118D 0.04 TCGA-13-1477-01 3 73440222 73440222 T C PDZRN3 Missense_Mutation p.T434A 0.04 deleterious(0) possibly_damaging(0.767) TCGA-13-1477-01 4 108829787 108829787 G A SGMS2 Missense_Mutation p.C265Y 0.04 deleterious(0.02) probably_damaging(1) TCGA-13-1477-01 4 15709255 15709255 A G BST1 Missense_Mutation p.Q146R 0.04 deleterious(0.01) benign(0.285) TCGA-13-1477-01 4 187540310 187540310 T C FAT1 Missense_Mutation p.Q2477R 0.06 benign(0.008) TCGA-13-1477-01 4 69416479 69416479 T C UGT2B17 Missense_Mutation p.K410R 0.02 deleterious(0.03) probably_damaging(0.912) TCGA-13-1477-01 4 72338693 72338693 G T SLC4A4 Intron 0.03 TCGA-13-1477-01 4 83838786 83838786 A G THAP9 Missense_Mutation p.K474R 0.03 tolerated(0.24) benign(0.005) TCGA-13-1477-01 4 87692530 87692530 A C PTPN13 Silent p.I1675I 0.55 TCGA-13-1477-01 5 115298605 115298605 C T AQPEP Silent p.R97R 0.04 TCGA-13-1477-01 5 1244883 1244883 G A SLC6A18 Splice_Site p.X552_splice 0.15 TCGA-13-1477-01 5 131822759 131822759 G A IRF1 Missense_Mutation p.A84V 0.06 deleterious(0) probably_damaging(0.999) TCGA-13-1477-01 5 132561418 132561418 G A FSTL4 Missense_Mutation p.P370L 0.04 deleterious(0) possibly_damaging(0.861) TCGA-13-1477-01 5 140236886 140236886 C T PCDHA10 Missense_Mutation p.S418L 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.612) TCGA-13-1477-01 5 140595169 140595169 C G PCDHB13 Missense_Mutation p.P492A 0.09 deleterious_low_confidence(0.01) benign(0.233) TCGA-13-1477-01 5 140616218 140616218 T C PCDHB18 RNA 0.38 TCGA-13-1477-01 5 140951574 140951574 A G DIAPH1 Missense_Mutation p.W798R 0.03 probably_damaging(1) TCGA-13-1477-01 5 141335461 141335461 A G PCDH12 Silent p.H652H 0.04 TCGA-13-1477-01 5 156810282 156810282 G A CYFIP2 Missense_Mutation p.R1015H 0.12 deleterious(0.01) possibly_damaging(0.738) TCGA-13-1477-01 5 167645417 167645417 C T TENM2 Silent p.N1507N 0.27 TCGA-13-1477-01 5 172659653 172659653 C G NKX2-5 Silent p.G298G 0.29 TCGA-13-1477-01 5 35753833 35753833 G A SPEF2 Missense_Mutation p.M1146I 0.35 tolerated(1) benign(0) TCGA-13-1477-01 5 38510652 38510652 C T LIFR Missense_Mutation p.R302H 0.11 tolerated(0.68) benign(0) TCGA-13-1477-01 5 53814497 53814497 G A SNX18 Missense_Mutation p.G239S 0.05 deleterious(0) benign(0.257) TCGA-13-1477-01 5 57754661 57754661 T C PLK2 Missense_Mutation p.K129R 0.07 tolerated(1) benign(0.007) TCGA-13-1477-01 5 79054642 79054642 A G CMYA5 Missense_Mutation p.Y3726C 0.03 probably_damaging(0.999) TCGA-13-1477-01 5 95234368 95234369 - G ELL2 Frame_Shift_Ins p.A368Cfs*28 0.09 TCGA-13-1477-01 6 116949520 116949520 T C RSPH4A Silent p.H550H 0.57 TCGA-13-1477-01 6 119327231 119327231 G C FAM184A Intron 0.64 TCGA-13-1477-01 6 142409592 142409592 G A NMBR Silent p.F68F 0.04 TCGA-13-1477-01 6 150715370 150715370 C T IYD Silent p.G222G 0.10 TCGA-13-1477-01 6 157522076 157522076 G A ARID1B Missense_Mutation p.G1450S 0.12 probably_damaging(0.999) TCGA-13-1477-01 6 169648829 169648829 C T THBS2 Missense_Mutation p.G98S 0.08 deleterious(0) probably_damaging(1) TCGA-13-1477-01 6 17292121 17292121 C A RBM24 Nonsense_Mutation p.S161* 0.08 TCGA-13-1477-01 6 2779546 2779546 A G WRNIP1 Missense_Mutation p.S436G 0.04 deleterious(0.02) benign(0.277) TCGA-13-1477-01 6 28053534 28053534 G T ZNF165 Silent p.L92L 0.05 TCGA-13-1477-01 6 28334138 28334138 G T ZKSCAN3 3'UTR 0.05 TCGA-13-1477-01 6 30620609 30620609 G A C6orf136 Missense_Mutation p.V470M 0.70 deleterious(0) probably_damaging(0.997) TCGA-13-1477-01 6 31674702 31674702 C A LY6G6F Missense_Mutation p.L7I 0.05 deleterious(0.01) benign(0.364) TCGA-13-1477-01 6 31901967 31901967 T A C2 Missense_Mutation p.I247N 0.06 deleterious(0) probably_damaging(0.993) TCGA-13-1477-01 6 32261149 32261149 T G C6orf10 Missense_Mutation p.D434A 0.03 tolerated(0.21) probably_damaging(0.994) TCGA-13-1477-01 6 32948176 32948176 A G BRD2 Missense_Mutation p.E770G 0.03 deleterious(0) benign(0.403) TCGA-13-1477-01 6 33041355 33041355 G A HLA-DPA1 5'UTR 0.06 TCGA-13-1477-01 6 33138139 33138140 - G COL11A2 Frame_Shift_Ins p.G1097Rfs*12 0.20 TCGA-13-1477-01 6 46108111 46108111 A C ENPP4 Missense_Mutation p.D264A 0.30 deleterious(0) possibly_damaging(0.472) TCGA-13-1477-01 6 51935827 51935827 C T PKHD1 Missense_Mutation p.C215Y 0.03 deleterious(0) benign(0.261) TCGA-13-1477-01 6 7580172 7580172 A T DSP Missense_Mutation p.K1250M 0.07 probably_damaging(0.979) TCGA-13-1477-01 6 75851776 75851776 A T COL12A1 Silent p.S1643S 0.04 TCGA-13-1477-01 6 83896750 83896750 G C PGM3 Missense_Mutation p.T173S 0.05 tolerated(0.74) benign(0.004) TCGA-13-1477-01 6 93953189 93953189 C T EPHA7 Missense_Mutation p.M984I 0.04 tolerated(0.11) benign(0.147) TCGA-13-1477-01 7 102553618 102553618 C G FBXL13 Missense_Mutation p.R308P 0.30 deleterious(0) possibly_damaging(0.763) TCGA-13-1477-01 7 130027888 130027888 G A CPA1 3'UTR 0.04 TCGA-13-1477-01 7 140373900 140373900 T G ADCK2 Missense_Mutation p.L257R 0.12 tolerated(0.35) benign(0.013) TCGA-13-1477-01 7 151848073 151848073 T A KMT2C Missense_Mutation p.K4229M 0.06 benign(0.375) TCGA-13-1477-01 7 154598809 154598809 G A DPP6 Silent p.L551L 0.05 TCGA-13-1477-01 7 20691200 20691200 C A ABCB5 Missense_Mutation p.A497E 0.02 deleterious(0) probably_damaging(0.997) TCGA-13-1477-01 7 31378144 31378144 T C NEUROD6 Missense_Mutation p.T247A 0.04 tolerated(1) benign(0.018) TCGA-13-1477-01 7 31622789 31622789 G A CCDC129 Missense_Mutation p.M430I 0.04 tolerated(0.21) benign(0.004) TCGA-13-1477-01 7 45725752 45725752 G A ADCY1 Silent p.L755L 0.04 TCGA-13-1477-01 7 5353100 5353100 G T TNRC18 Missense_Mutation p.S2474R 0.07 benign(0.307) TCGA-13-1477-01 7 6189639 6189639 G A USP42 Silent p.L604L 0.88 TCGA-13-1477-01 8 105502918 105502918 C T LRP12 Missense_Mutation p.A855T 0.04 tolerated_low_confidence(0.1) benign(0.293) TCGA-13-1477-01 8 139153505 139153505 C T FAM135B Silent p.T1242T 0.05 TCGA-13-1477-01 8 42587315 42587315 T A CHRNB3 Missense_Mutation p.S289T 0.34 tolerated(1) probably_damaging(0.999) TCGA-13-1477-01 8 48736460 48736460 C T PRKDC Missense_Mutation p.A2960T 0.03 possibly_damaging(0.814) TCGA-13-1477-01 8 52366129 52366129 G T PXDNL Missense_Mutation p.A400D 0.03 deleterious(0) probably_damaging(0.998) TCGA-13-1477-01 8 57358323 57358323 G A PENK Intron 0.05 TCGA-13-1477-01 8 91054999 91054999 G T DECR1 Missense_Mutation p.V237L 0.07 tolerated(0.06) benign(0.025) TCGA-13-1477-01 9 107298113 107298113 A G OR13C3 Silent p.L328L 0.03 TCGA-13-1477-01 9 109687862 109687862 C T ZNF462 Missense_Mutation p.P557S 0.08 possibly_damaging(0.641) TCGA-13-1477-01 9 13115318 13115318 C A MPDZ Intron 0.11 TCGA-13-1477-01 9 137779170 137779170 A G FCN2 Missense_Mutation p.H284R 0.11 deleterious(0.01) possibly_damaging(0.765) TCGA-13-1477-01 9 138713032 138713032 C A CAMSAP1 Missense_Mutation p.D1159Y 0.05 deleterious(0.01) benign(0.012) TCGA-13-1477-01 9 2718828 2718828 C T KCNV2 Silent p.G363G 0.05 TCGA-13-1477-01 9 27950338 27950338 C T LINGO2 Missense_Mutation p.R111H 0.04 tolerated(0.11) possibly_damaging(0.616) TCGA-13-1477-01 9 37006489 37006489 T C PAX5 Silent p.P152P 0.06 TCGA-13-1477-01 9 95738854 95738854 G C FGD3 Missense_Mutation p.G106R 0.30 tolerated(0.22) benign(0.007) TCGA-13-1477-01 9 96860473 96860473 G T PTPDC1 Missense_Mutation p.G540V 0.05 deleterious(0.01) benign(0.071) TCGA-13-1477-01 X 104999298 104999298 A G IL1RAPL2 Silent p.G440G 0.03 TCGA-13-1477-01 X 112024238 112024238 C T AMOT Silent p.R783R 0.03 TCGA-13-1477-01 X 127185194 127185194 G A ACTRT1 Missense_Mutation p.T331I 0.06 tolerated(1) benign(0.063) TCGA-13-1477-01 X 129147438 129147438 A G BCORL1 Silent p.P230P 0.08 TCGA-13-1477-01 X 132160717 132160717 C A USP26 Missense_Mutation p.S511I 0.03 deleterious(0) possibly_damaging(0.596) TCGA-13-1477-01 X 133700583 133700583 G A PLAC1 Silent p.L44L 0.03 TCGA-13-1477-01 X 136648913 136648913 G A ZIC3 Silent p.A21A 0.31 TCGA-13-1477-01 X 13792741 13792741 C A GPM6B Intron 0.09 TCGA-13-1477-01 X 139006387 139006387 C T MIR505 RNA 0.04 TCGA-13-1477-01 X 147063133 147063133 A G FMR1NB Missense_Mutation p.M71V 0.04 tolerated(0.32) benign(0.043) TCGA-13-1477-01 X 155234223 155234223 C T IL9R Missense_Mutation p.A191V 0.04 deleterious(0.03) benign(0.328) TCGA-13-1477-01 X 27999407 27999407 C T DCAF8L1 Silent p.V15V 0.04 TCGA-13-1477-01 X 30269381 30269381 C T MAGEB1 Silent p.Y257Y 0.19 TCGA-13-1477-01 X 50345729 50345729 G A SHROOM4 Silent p.A1282A 0.07 TCGA-13-1477-01 X 57619716 57619716 C A ZXDB Missense_Mutation p.S412Y 0.04 deleterious(0) probably_damaging(0.987) TCGA-13-1477-01 X 68749746 68749746 T C FAM155B Silent p.L456L 0.34 TCGA-13-1477-01 X 70389792 70389792 C T NLGN3 Missense_Mutation p.R798C 0.20 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-13-1477-01 X 70468892 70468892 T C ZMYM3 Missense_Mutation p.K533R 0.06 tolerated(0.16) benign(0.011) TCGA-13-1500-01 10 27459474 27459475 - A MASTL Frame_Shift_Ins p.N531Kfs*5 0.10 TCGA-13-1500-01 10 60047395 60047396 - A CISD1 Frame_Shift_Ins p.E107Rfs*8 0.34 TCGA-13-1500-01 10 70333783 70333783 C A TET1 Missense_Mutation p.T563N 0.09 tolerated(0.06) benign(0.035) TCGA-13-1500-01 11 113215052 113215052 C G TTC12 Silent p.L348L 0.02 TCGA-13-1500-01 11 114278483 114278483 G T RBM7 Missense_Mutation p.R252I 0.03 deleterious(0) probably_damaging(0.999) TCGA-13-1500-01 11 114453674 114453674 T C NXPE4 Missense_Mutation p.K56E 0.02 tolerated(1) benign(0) TCGA-13-1500-01 11 117299316 117299316 C T DSCAML1 Missense_Mutation p.A2024T 0.51 tolerated_low_confidence(0.49) benign(0.002) TCGA-13-1500-01 11 120348177 120348177 T G ARHGEF12 Missense_Mutation p.D1158E 0.06 tolerated_low_confidence(1) benign(0) TCGA-13-1500-01 11 123513189 123513189 G A SCN3B Missense_Mutation p.T137M 0.05 tolerated(0.08) benign(0.413) TCGA-13-1500-01 11 17419262 17419262 A G ABCC8 Missense_Mutation p.L1279P 0.17 deleterious(0) probably_damaging(0.934) TCGA-13-1500-01 11 18231798 18231798 T C RP11-113D6.10 3'UTR 0.07 TCGA-13-1500-01 11 36614367 36614367 C T RAG2 Missense_Mutation p.G451E 0.59 deleterious(0) probably_damaging(1) TCGA-13-1500-01 11 47712303 47712303 C A AGBL2 Missense_Mutation p.R319L 0.58 deleterious(0) probably_damaging(0.984) TCGA-13-1500-01 11 56043515 56043515 G A OR5T1 Missense_Mutation p.R134H 0.25 deleterious(0.04) benign(0.127) TCGA-13-1500-01 11 57095835 57095835 T A SSRP1 Missense_Mutation p.K516M 0.06 deleterious(0.01) possibly_damaging(0.52) TCGA-13-1500-01 11 64977543 64977543 A T CAPN1 Missense_Mutation p.M640L 0.45 tolerated(0.19) benign(0.106) TCGA-13-1500-01 11 71155973 71155973 A T DHCR7 Missense_Mutation p.I9N 0.06 tolerated(0.49) benign(0.013) TCGA-13-1500-01 11 73179508 73179508 A G FAM168A Silent p.V4V 0.05 TCGA-13-1500-01 11 86161007 86161007 A G ME3 Missense_Mutation p.L352P 0.03 deleterious(0) probably_damaging(0.998) TCGA-13-1500-01 12 122709115 122709115 G C DIABLO Missense_Mutation p.H43D 0.44 tolerated(0.48) benign(0.102) TCGA-13-1500-01 12 123340825 123340825 G A HIP1R Silent p.A445A 0.46 TCGA-13-1500-01 12 124289404 124289404 T A DNAH10 Missense_Mutation p.I817N 0.12 possibly_damaging(0.498) TCGA-13-1500-01 12 56421693 56421693 G A IKZF4 Missense_Mutation p.R226Q 0.37 deleterious(0.03) probably_damaging(1) TCGA-13-1500-01 13 20579235 20579235 A G ZMYM2 Silent p.G385G 0.05 TCGA-13-1500-01 13 78192165 78192165 T C SCEL Missense_Mutation p.V533A 0.39 deleterious(0.05) possibly_damaging(0.702) TCGA-13-1500-01 14 55510711 55510714 TATT - SOCS4 Frame_Shift_Del p.L319Sfs*42 0.48 TCGA-13-1500-01 14 57268523 57268523 T A OTX2 Missense_Mutation p.K275M 0.09 deleterious(0) benign(0.081) TCGA-13-1500-01 14 62212456 62212456 T G HIF1A Silent p.L774L 0.05 TCGA-13-1500-01 14 69890826 69890826 G A SLC39A9 Missense_Mutation p.V38M 0.30 deleterious(0.03) benign(0.43) TCGA-13-1500-01 15 25330584 25330584 G T SNORD116-18 RNA 0.25 TCGA-13-1500-01 15 93496687 93496687 C T CHD2 Missense_Mutation p.P535S 0.36 deleterious(0) probably_damaging(0.997) TCGA-13-1500-01 16 20335343 20335343 C T GP2 Silent p.V110V 0.04 TCGA-13-1500-01 16 31383959 31383959 G T ITGAX Missense_Mutation p.Q778H 0.04 tolerated(0.08) probably_damaging(0.998) TCGA-13-1500-01 16 75688229 75688229 C A TERF2IP Silent p.I243I 0.05 TCGA-13-1500-01 16 90124522 90124522 G A PRDM7 3'UTR 0.06 TCGA-13-1500-01 17 12044463 12044463 G T MAP2K4 Splice_Site p.X363_splice 0.08 TCGA-13-1500-01 17 34257282 34257282 T A RDM1 Intron 0.14 TCGA-13-1500-01 17 40847826 40847826 C G CNTNAP1 Missense_Mutation p.P1094A 0.52 deleterious(0) probably_damaging(0.999) TCGA-13-1500-01 17 43004357 43004357 C A KIF18B Missense_Mutation p.S789I 0.27 deleterious(0) probably_damaging(0.943) TCGA-13-1500-01 17 74288369 74288369 T C QRICH2 Silent p.Q647Q 0.08 TCGA-13-1500-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.53 deleterious(0) probably_damaging(1) TCGA-13-1500-01 18 34647369 34647369 G A KIAA1328 Missense_Mutation p.D365N 0.54 tolerated(0.09) benign(0.008) TCGA-13-1500-01 19 13335556 13335556 C G CACNA1A Missense_Mutation p.D1886H 0.10 benign(0.202) TCGA-13-1500-01 19 21607165 21607165 T C ZNF493 Silent p.T568T 0.08 TCGA-13-1500-01 19 37369100 37369100 T C ZNF345 Silent p.C456C 0.28 TCGA-13-1500-01 19 40395994 40395994 C T FCGBP Missense_Mutation p.R2468H 0.20 benign(0.07) TCGA-13-1500-01 19 43698664 43698664 C A PSG4 Missense_Mutation p.E357D 0.05 tolerated(1) benign(0.013) TCGA-13-1500-01 19 44933485 44933485 A G ZNF229 Missense_Mutation p.C491R 0.12 deleterious(0.01) possibly_damaging(0.661) TCGA-13-1500-01 19 50185266 50185266 G A PRMT1 Missense_Mutation p.G98S 0.05 deleterious(0) probably_damaging(0.998) TCGA-13-1500-01 19 58453033 58453033 G A ZNF256 Silent p.C381C 0.29 TCGA-13-1500-01 1 112524552 112524552 G A KCND3 Missense_Mutation p.A266V 0.25 deleterious(0) possibly_damaging(0.787) TCGA-13-1500-01 1 115231348 115231348 T C AMPD1 Missense_Mutation p.M50V 0.32 tolerated(1) benign(0.004) TCGA-13-1500-01 1 152275855 152275855 T C FLG Missense_Mutation p.Q3836R 0.02 unknown(0) TCGA-13-1500-01 1 152279807 152279807 T A FLG Missense_Mutation p.N2519Y 0.41 possibly_damaging(0.849) TCGA-13-1500-01 1 15988099 15988099 G A RSC1A1 Missense_Mutation p.R579H 0.38 deleterious(0) probably_damaging(0.995) TCGA-13-1500-01 1 20027309 20027309 T C TMCO4 Missense_Mutation p.E445G 0.10 deleterious(0.02) benign(0.3) TCGA-13-1500-01 1 202935700 202935700 C T CYB5R1 Missense_Mutation p.R65H 0.22 deleterious(0) probably_damaging(0.998) TCGA-13-1500-01 1 203274674 203274674 C G BTG2 5'UTR 0.33 TCGA-13-1500-01 1 203708691 203708691 G T ATP2B4 Silent p.A1109A 0.27 TCGA-13-1500-01 1 204943900 204943900 G A NFASC Missense_Mutation p.A503T 0.38 deleterious(0) probably_damaging(0.978) TCGA-13-1500-01 1 205689705 205689705 T A NUCKS1 Missense_Mutation p.K102N 0.29 deleterious(0.04) possibly_damaging(0.895) TCGA-13-1500-01 1 21154143 21154143 T G EIF4G3 Silent p.L1362L 0.28 TCGA-13-1500-01 1 21154188 21154188 T A EIF4G3 Missense_Mutation p.E1347D 0.30 tolerated(0.06) probably_damaging(0.968) TCGA-13-1500-01 1 221055662 221055662 C T HLX Missense_Mutation p.A310V 0.06 deleterious(0) probably_damaging(0.968) TCGA-13-1500-01 1 232172438 232172438 A C DISC1 Splice_Site p.X810_splice 0.04 TCGA-13-1500-01 1 39988764 39988764 C A BMP8A Missense_Mutation p.T345N 0.05 deleterious(0) probably_damaging(0.997) TCGA-13-1500-01 1 91406560 91406560 A G ZNF644 Silent p.N117N 0.22 TCGA-13-1500-01 21 37736500 37736500 C T MORC3 Missense_Mutation p.A521V 0.03 tolerated(0.34) benign(0.001) TCGA-13-1500-01 21 47809302 47809302 G T PCNT Missense_Mutation p.A1266S 0.58 possibly_damaging(0.739) TCGA-13-1500-01 22 22049282 22049282 C T PPIL2 Silent p.S463S 0.22 TCGA-13-1500-01 22 22049285 22049285 C T PPIL2 Silent p.S464S 0.22 TCGA-13-1500-01 22 29737750 29737750 C T AP1B1 Splice_Site p.X513_splice 0.43 TCGA-13-1500-01 2 100625372 100625372 C T AFF3 Missense_Mutation p.A51T 0.06 deleterious(0.05) benign(0.002) TCGA-13-1500-01 2 103378693 103378693 C A TMEM182 Missense_Mutation p.A6D 0.28 deleterious(0.01) possibly_damaging(0.908) TCGA-13-1500-01 2 145156198 145156198 T C ZEB2 Silent p.S852S 0.26 TCGA-13-1500-01 2 152226719 152226719 G A TNFAIP6 Missense_Mutation p.E194K 0.02 deleterious(0.03) possibly_damaging(0.775) TCGA-13-1500-01 2 16745313 16745313 G A FAM49A Missense_Mutation p.A81V 0.04 tolerated(0.15) benign(0.273) TCGA-13-1500-01 2 20133226 20133226 A G WDR35 Missense_Mutation p.V876A 0.04 deleterious(0.01) probably_damaging(0.986) TCGA-13-1500-01 2 204000757 204000757 G A NBEAL1 Missense_Mutation p.E1362K 0.27 tolerated(0.8) benign(0.005) TCGA-13-1500-01 2 215865568 215865571 TGTG - ABCA12 Frame_Shift_Del p.H1013Tfs*31 0.42 TCGA-13-1500-01 2 220108240 220108240 G A GLB1L Missense_Mutation p.T19M 0.40 tolerated(0.22) benign(0) TCGA-13-1500-01 2 231155199 231155199 C G SP140 Missense_Mutation p.T582S 0.11 tolerated(0.87) benign(0.115) TCGA-13-1500-01 2 233671363 233671363 A T GIGYF2 Missense_Mutation p.H622L 0.33 benign(0.014) TCGA-13-1500-01 2 235404587 235404587 A T ARL4C 3'UTR 0.15 TCGA-13-1500-01 2 235404591 235404591 T A ARL4C 3'UTR 0.13 TCGA-13-1500-01 2 86702097 86702097 A C KDM3A Silent p.S641S 0.06 TCGA-13-1500-01 3 10081620 10081620 T G FANCD2 Intron 0.05 TCGA-13-1500-01 3 122628986 122628986 G A SEMA5B 3'UTR 0.43 TCGA-13-1500-01 3 185929602 185929602 G A DGKG Silent p.H633H 0.31 TCGA-13-1500-01 3 189585642 189585642 A G TP63 Silent p.T301T 0.09 TCGA-13-1500-01 3 3888528 3888528 T A LRRN1 3'UTR 0.34 TCGA-13-1500-01 4 184174991 184174991 G A WWC2 Silent p.L345L 0.53 TCGA-13-1500-01 4 188924824 188924824 A G ZFP42 Missense_Mutation p.Q288R 0.03 deleterious(0.02) probably_damaging(0.996) TCGA-13-1500-01 4 23797412 23797412 C T PPARGC1A 3'UTR 0.03 TCGA-13-1500-01 4 5564671 5564671 A G EVC2 Silent p.N1277N 0.02 TCGA-13-1500-01 5 140264012 140264012 C T PCDHA13 Missense_Mutation p.A720V 0.03 tolerated_low_confidence(0.12) benign(0.034) TCGA-13-1500-01 5 140710277 140710277 G T PCDHGA1 Missense_Mutation p.G9V 0.03 tolerated_low_confidence(0.06) benign(0.015) TCGA-13-1500-01 5 19612654 19612654 C T CDH18 Missense_Mutation p.V234I 0.27 tolerated(0.05) probably_damaging(0.994) TCGA-13-1500-01 5 41929818 41929818 T C FBXO4 Missense_Mutation p.Y149H 0.07 tolerated(0.55) benign(0) TCGA-13-1500-01 5 50118211 50118211 A G PARP8 Missense_Mutation p.T613A 0.05 tolerated(0.23) benign(0.002) TCGA-13-1500-01 5 55243396 55243396 A G IL6ST Missense_Mutation p.I621T 0.03 tolerated(0.06) benign(0.265) TCGA-13-1500-01 5 73069826 73069826 C T ARHGEF28 Missense_Mutation p.R208C 0.29 deleterious(0.01) possibly_damaging(0.586) TCGA-13-1500-01 6 12126025 12126025 A G HIVEP1 Silent p.L1999L 0.03 TCGA-13-1500-01 6 158567815 158567815 A C SERAC1 Missense_Mutation p.H162Q 0.02 tolerated(0.26) benign(0.004) TCGA-13-1500-01 6 29638163 29638163 G A MOG Missense_Mutation p.R233Q 0.42 tolerated(0.09) possibly_damaging(0.902) TCGA-13-1500-01 6 35211819 35211819 A G SCUBE3 Silent p.E717E 0.06 TCGA-13-1500-01 6 70926743 70926743 C T COL9A1 Missense_Mutation p.G875S 0.30 probably_damaging(1) TCGA-13-1500-01 7 116165023 116165023 T C CAV1 5'UTR 0.04 TCGA-13-1500-01 7 44737224 44737224 T C OGDH Missense_Mutation p.M734T 0.02 deleterious(0) probably_damaging(0.928) TCGA-13-1500-01 7 76022794 76022794 T A SRCRB4D Missense_Mutation p.S421C 0.30 tolerated(0.09) possibly_damaging(0.886) TCGA-13-1500-01 8 139601625 139601625 T C COL22A1 Silent p.Q1584Q 0.13 TCGA-13-1500-01 8 139895356 139895356 A T COL22A1 Missense_Mutation p.S20R 0.19 benign(0.019) TCGA-13-1500-01 8 145699781 145699782 - C FOXH1 Frame_Shift_Ins p.V313Gfs*4 0.11 TCGA-13-1500-01 8 1728478 1728478 C T CLN8 Silent p.H202H 0.65 TCGA-13-1500-01 9 124528904 124528904 T C DAB2IP Missense_Mutation p.M503T 0.08 deleterious(0) probably_damaging(0.956) TCGA-13-1500-01 X 10096595 10096595 A C WWC3 Splice_Site p.X761_splice 0.36 TCGA-13-1500-01 X 10176604 10176604 G A CLCN4 Missense_Mutation p.V455I 0.31 tolerated(1) benign(0.001) TCGA-13-1500-01 X 111019845 111019845 T C TRPC5 Missense_Mutation p.Q873R 0.13 tolerated_low_confidence(1) benign(0) TCGA-13-1500-01 X 129148425 129148425 G A BCORL1 Silent p.K559K 0.31 TCGA-13-1500-01 X 133559376 133559376 A G PHF6 3'UTR 0.03 TCGA-13-1500-01 X 15311298 15311298 T C ASB11 Missense_Mutation p.K172E 0.02 tolerated(0.05) probably_damaging(0.916) TCGA-13-1500-01 X 23898976 23898976 C T APOO Missense_Mutation p.V35M 0.24 tolerated(0.33) benign(0.041) TCGA-13-1500-01 X 73042907 73042907 A G XIST RNA 0.10 TCGA-13-1500-01 X 73751408 73751408 T C SLC16A2 3'UTR 0.34 TCGA-13-1505-01 11 10821215 10821215 T G EIF4G2 Missense_Mutation p.E736D 0.19 tolerated(0.7) probably_damaging(0.951) TCGA-13-1505-01 11 111414703 111414703 C - LAYN Frame_Shift_Del p.H56Mfs*7 0.11 TCGA-13-1505-01 11 117282856 117282856 A C CEP164 Missense_Mutation p.H1452P 0.10 deleterious(0) benign(0.245) TCGA-13-1505-01 11 125447464 125447464 T C EI24 Missense_Mutation p.I105T 0.11 tolerated(0.14) benign(0.16) TCGA-13-1505-01 11 2339102 2339102 G T TSPAN32 Missense_Mutation p.G304V 0.19 deleterious_low_confidence(0.01) benign(0.158) TCGA-13-1505-01 11 2339103 2339103 C G TSPAN32 Silent p.G304G 0.19 TCGA-13-1505-01 11 44626655 44626655 G A CD82 Missense_Mutation p.V62M 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-13-1505-01 11 55540921 55540921 C A OR5D13 Missense_Mutation p.A3E 0.12 tolerated_low_confidence(0.11) benign(0.005) TCGA-13-1505-01 11 56310489 56310489 G A OR5M11 Missense_Mutation p.S82L 0.18 tolerated(1) benign(0) TCGA-13-1505-01 11 61533639 61533640 - G MYRF Frame_Shift_Ins p.T118Hfs*8 0.08 TCGA-13-1505-01 11 66360370 66360371 - G CCDC87 Frame_Shift_Ins p.Q40Afs*39 0.09 TCGA-13-1505-01 11 94801044 94801044 C T SRSF8 Silent p.L218L 0.24 TCGA-13-1505-01 12 100796167 100796167 G T SLC17A8 Missense_Mutation p.E271D 0.39 tolerated(0.06) benign(0.217) TCGA-13-1505-01 12 116446604 116446604 C A MED13L Missense_Mutation p.K538N 0.10 tolerated(0.24) unknown(0) TCGA-13-1505-01 12 123006786 123006786 T A RSRC2 Nonsense_Mutation p.K23* 0.20 TCGA-13-1505-01 12 18234195 18234195 C T RERGL Missense_Mutation p.R183H 0.05 deleterious(0.01) probably_damaging(0.991) TCGA-13-1505-01 12 72388224 72388224 C G TPH2 Missense_Mutation p.T316R 0.16 deleterious(0) probably_damaging(0.994) TCGA-13-1505-01 12 8377408 8377408 G C FAM90A1 Silent p.P7P 0.10 TCGA-13-1505-01 13 38320106 38320106 G T TRPC4 Missense_Mutation p.L289I 0.03 deleterious(0) probably_damaging(0.999) TCGA-13-1505-01 13 39262686 39262686 C T FREM2 Missense_Mutation p.S402F 0.15 deleterious(0) benign(0.265) TCGA-13-1505-01 13 47275320 47275320 G T LRCH1 Missense_Mutation p.D460Y 0.05 deleterious(0) possibly_damaging(0.837) TCGA-13-1505-01 14 103574825 103574825 G C EXOC3L4 Missense_Mutation p.E649D 0.32 deleterious(0.02) possibly_damaging(0.859) TCGA-13-1505-01 14 106845573 106845573 C G IGHV3-35 Missense_Mutation p.G34A 0.11 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-13-1505-01 14 37737998 37737998 G T MIPOL1 Missense_Mutation p.K129N 0.09 deleterious(0) probably_damaging(0.972) TCGA-13-1505-01 14 42355895 42355895 C T LRFN5 Missense_Mutation p.R23C 0.09 deleterious(0) probably_damaging(0.998) TCGA-13-1505-01 15 86312927 86312927 G A KLHL25 Missense_Mutation p.L39F 0.19 tolerated(0.44) benign(0.007) TCGA-13-1505-01 16 2025875 2025875 G A TBL3 Missense_Mutation p.V352M 0.05 tolerated(0.06) probably_damaging(0.969) TCGA-13-1505-01 16 20999012 20999012 G A DNAH3 Intron 0.26 TCGA-13-1505-01 16 28909649 28909649 G A ATP2A1 Silent p.A547A 0.16 TCGA-13-1505-01 16 33020716 33020716 C A IGHV3OR16-8 Missense_Mutation p.P42T 0.16 deleterious_low_confidence(0.04) benign(0) TCGA-13-1505-01 16 67281166 67281166 G C FHOD1 Missense_Mutation p.P50A 0.56 tolerated(0.13) probably_damaging(0.968) TCGA-13-1505-01 16 67696293 67696293 C T PARD6A Missense_Mutation p.R262C 0.30 deleterious(0.04) possibly_damaging(0.772) TCGA-13-1505-01 17 1549751 1549751 G A RILP Silent p.A397A 0.74 TCGA-13-1505-01 17 19318109 19318109 G T RNF112 Silent p.V345V 0.17 TCGA-13-1505-01 17 34076160 34076160 A T GAS2L2 Missense_Mutation p.V235E 0.12 deleterious(0) probably_damaging(1) TCGA-13-1505-01 17 40826400 40826400 G C PLEKHH3 Missense_Mutation p.P64A 0.71 tolerated(0.1) unknown(0) TCGA-13-1505-01 17 42030480 42030480 G T PYY Nonsense_Mutation p.S89* 0.12 TCGA-13-1505-01 17 42030481 42030481 A G PYY Missense_Mutation p.S89P 0.12 tolerated(0.14) benign(0.006) TCGA-13-1505-01 17 4720262 4720263 TG - PLD2 Frame_Shift_Del p.M538Tfs*102 0.49 TCGA-13-1505-01 17 48596043 48596043 C T MYCBPAP Missense_Mutation p.R247C 0.23 deleterious(0) probably_damaging(0.972) TCGA-13-1505-01 17 5341451 5341451 G C C1QBP Silent p.A125A 0.09 TCGA-13-1505-01 17 7579462 7579462 A - TP53 Frame_Shift_Del p.A76Hfs*47 0.50 TCGA-13-1505-01 18 13885322 13885322 A T MC2R Missense_Mutation p.L66M 0.29 deleterious(0) probably_damaging(1) TCGA-13-1505-01 18 19997538 19997539 CT - CTAGE1 Frame_Shift_Del p.E79Vfs*9 0.09 TCGA-13-1505-01 18 29211074 29211074 G C B4GALT6 Missense_Mutation p.F208L 0.09 tolerated(0.93) benign(0.012) TCGA-13-1505-01 19 16000253 16000253 C T CYP4F2 Missense_Mutation p.D300N 0.16 deleterious(0.01) probably_damaging(0.927) TCGA-13-1505-01 19 16000263 16000263 C T CYP4F2 Silent p.L296L 0.17 TCGA-13-1505-01 19 23926677 23926677 C A ZNF681 Nonsense_Mutation p.E559* 0.06 TCGA-13-1505-01 19 42224002 42224002 T A CEACAM5 Missense_Mutation p.L549Q 0.10 deleterious(0.03) probably_damaging(1) TCGA-13-1505-01 19 47425365 47425365 C T ARHGAP35 Nonsense_Mutation p.R1145* 0.19 TCGA-13-1505-01 19 54377273 54377273 G A MYADM Missense_Mutation p.E164K 0.12 tolerated(0.16) benign(0.016) TCGA-13-1505-01 19 55239150 55239150 A T KIR3DL3 Missense_Mutation p.Q143H 0.13 tolerated(0.18) benign(0.201) TCGA-13-1505-01 19 55496466 55496476 ATTTGGATCAA - NLRP2 Frame_Shift_Del p.F695* 0.08 TCGA-13-1505-01 19 55711817 55711817 C A PTPRH Missense_Mutation p.A403S 0.15 benign(0.042) TCGA-13-1505-01 19 9074525 9074525 C T MUC16 Silent p.Q4307Q 0.06 TCGA-13-1505-01 1 156510697 156510697 G A IQGAP3 Missense_Mutation p.H848Y 0.05 tolerated(0.14) benign(0.042) TCGA-13-1505-01 1 161069905 161069905 G A KLHDC9 Missense_Mutation p.R314H 0.11 deleterious(0) probably_damaging(0.999) TCGA-13-1505-01 1 17250890 17250890 G C CROCC Missense_Mutation p.E89D 0.32 probably_damaging(0.992) TCGA-13-1505-01 1 197071041 197071041 G T ASPM Missense_Mutation p.A2447D 0.04 tolerated(0.17) probably_damaging(0.986) TCGA-13-1505-01 1 206945836 206945836 G A IL10 5'UTR 0.20 TCGA-13-1505-01 1 207790003 207790003 A G CR1 Missense_Mutation p.I2249V 0.35 tolerated(1) benign(0.018) TCGA-13-1505-01 1 233120282 233120282 A G PCNXL2 Intron 0.40 TCGA-13-1505-01 1 44069155 44069155 G A PTPRF Silent p.K803K 0.02 TCGA-13-1505-01 20 17479533 17479533 C T BFSP1 Silent p.A296A 0.07 TCGA-13-1505-01 21 33368136 33368136 C T HUNK Missense_Mutation p.S454F 0.15 tolerated_low_confidence(0.09) benign(0.332) TCGA-13-1505-01 22 24376834 24376834 C T GSTT1 Silent p.T172T 0.38 TCGA-13-1505-01 2 179397562 179397562 G A TTN Missense_Mutation p.R34594C 0.10 TCGA-13-1505-01 2 179456052 179456052 A T TTN Missense_Mutation p.S20134T 0.11 TCGA-13-1505-01 2 179610453 179610454 - CTT TTN Intron 0.13 TCGA-13-1505-01 2 219447753 219447753 C A RQCD1 Missense_Mutation p.N88K 0.15 deleterious(0) probably_damaging(0.985) TCGA-13-1505-01 2 26534166 26534166 G A GPR113 Silent p.A810A 0.10 TCGA-13-1505-01 3 14803007 14803007 G T C3orf20 Missense_Mutation p.G794W 0.27 deleterious(0) probably_damaging(0.997) TCGA-13-1505-01 3 62739418 62739418 T C CADPS Missense_Mutation p.M196V 0.22 tolerated(0.1) benign(0.019) TCGA-13-1505-01 3 62739419 62739419 G A CADPS Silent p.R195R 0.22 TCGA-13-1505-01 3 81586152 81586152 G A GBE1 Silent p.D571D 0.14 TCGA-13-1505-01 4 126240977 126240977 T C FAT4 Silent p.Y1137Y 0.18 TCGA-13-1505-01 4 126372410 126372410 C A FAT4 Silent p.I3413I 0.15 TCGA-13-1505-01 4 3208354 3208354 C T HTT Silent p.S1950S 0.24 TCGA-13-1505-01 4 55156707 55156707 G A PDGFRA Silent p.K1036K 0.03 TCGA-13-1505-01 5 153078456 153078456 C T GRIA1 Silent p.N435N 0.37 TCGA-13-1505-01 5 156665131 156665131 G C ITK Missense_Mutation p.A261P 0.14 deleterious(0.01) benign(0.25) TCGA-13-1505-01 5 156915360 156915360 G A ADAM19 Silent p.P821P 0.05 TCGA-13-1505-01 5 176887453 176887453 G A DBN1 Missense_Mutation p.S314L 0.03 tolerated(0.11) benign(0.013) TCGA-13-1505-01 5 42719546 42719546 G C GHR 3'UTR 0.10 TCGA-13-1505-01 5 53606279 53606279 G C ARL15 Missense_Mutation p.L11V 0.17 tolerated_low_confidence(0.16) benign(0) TCGA-13-1505-01 6 106553412 106553412 C A PRDM1 Silent p.P459P 0.07 TCGA-13-1505-01 6 160888715 160888715 G A LPAL2 RNA 0.15 TCGA-13-1505-01 7 113558358 113558358 G A PPP1R3A Nonsense_Mutation p.Q232* 0.11 TCGA-13-1505-01 7 37916520 37916520 C T NME8 Missense_Mutation p.A302V 0.18 tolerated(0.66) benign(0) TCGA-13-1505-01 7 6449575 6449575 C G DAGLB Missense_Mutation p.D638H 0.03 deleterious(0) probably_damaging(1) TCGA-13-1505-01 8 139688816 139688816 C A COL22A1 Silent p.G1045G 0.43 TCGA-13-1505-01 8 75928798 75928798 A T CRISPLD1 Splice_Site p.X243_splice 0.04 TCGA-13-1505-01 9 117063983 117063983 C T COL27A1 Missense_Mutation p.R1611W 0.57 unknown(0) TCGA-13-1505-01 9 130649773 130649774 - G ST6GALNAC6 Frame_Shift_Ins p.N268Qfs*32 0.10 TCGA-13-1505-01 9 712652 712652 G A KANK1 Missense_Mutation p.G629D 0.32 deleterious(0) probably_damaging(0.973) TCGA-13-1505-01 X 100911587 100911587 C T ARMCX2 Missense_Mutation p.A330T 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.704) TCGA-13-1505-01 X 118971920 118971920 G A UPF3B Missense_Mutation p.R368W 0.11 tolerated(0.14) probably_damaging(0.982) TCGA-13-1505-01 X 129203384 129203384 G A ELF4 Missense_Mutation p.P360S 0.12 tolerated(0.17) benign(0.041) TCGA-13-1505-01 X 147024700 147024700 G A FMR1 Missense_Mutation p.R442Q 0.19 deleterious(0) probably_damaging(0.979) TCGA-13-1505-01 X 153130812 153130812 G T L1CAM Silent p.A897A 0.26 TCGA-13-1505-01 X 153944597 153944597 C T GAB3 Missense_Mutation p.R27H 0.45 deleterious(0) probably_damaging(0.993) TCGA-13-1505-01 X 47307087 47307087 A G ZNF41 Silent p.G694G 0.15 TCGA-13-1505-01 X 5821582 5821582 G A NLGN4X Silent p.F379F 0.65 TCGA-13-1505-01 X 83361405 83361405 G A RPS6KA6 Missense_Mutation p.H445Y 0.06 deleterious(0.01) probably_damaging(0.993) TCGA-13-2057-01 10 18940111 18940111 A G NSUN6 Missense_Mutation p.S8P 0.20 tolerated(0.12) benign(0.013) TCGA-13-2057-01 10 22016812 22016812 A T MLLT10 Missense_Mutation p.N673I 0.18 deleterious(0.01) benign(0.1) TCGA-13-2057-01 10 51623295 51623295 G A TIMM23 5'UTR 0.29 TCGA-13-2057-01 10 73857009 73857009 C T ASCC1 3'UTR 0.28 TCGA-13-2057-01 10 81317169 81317169 G C SFTPA2 Nonsense_Mutation p.Y181* 0.35 TCGA-13-2057-01 11 121348939 121348939 C G SORL1 Missense_Mutation p.A172G 0.13 deleterious(0.02) benign(0.053) TCGA-13-2057-01 11 17530977 17530977 A G USH1C Missense_Mutation p.W647R 0.16 tolerated_low_confidence(0.09) benign(0.001) TCGA-13-2057-01 11 48267487 48267487 A C OR4X2 Missense_Mutation p.I278L 0.25 deleterious(0) probably_damaging(0.992) TCGA-13-2057-01 11 49168277 49168277 A G FOLH1 3'UTR 0.20 TCGA-13-2057-01 11 55890079 55890079 C A OR8H3 Silent p.V77V 0.27 TCGA-13-2057-01 11 56058513 56058513 A G OR8H1 Missense_Mutation p.V9A 0.15 deleterious(0.04) benign(0.033) TCGA-13-2057-01 11 57106074 57106074 T C P2RX3 Missense_Mutation p.V17A 0.09 deleterious(0.01) probably_damaging(0.968) TCGA-13-2057-01 11 57505439 57505439 C G TMX2 Missense_Mutation p.T102R 0.12 tolerated(0.18) benign(0.045) TCGA-13-2057-01 11 5799510 5799510 C T OR52N5 Missense_Mutation p.V119M 0.18 tolerated(1) benign(0.011) TCGA-13-2057-01 11 58723114 58723114 G T GLYATL1 Missense_Mutation p.D206Y 0.13 deleterious(0) possibly_damaging(0.866) TCGA-13-2057-01 11 62748468 62748468 G A SLC22A6 Silent p.L342L 0.05 TCGA-13-2057-01 11 63137867 63137867 G T SLC22A9 Missense_Mutation p.M113I 0.19 deleterious(0.04) benign(0.002) TCGA-13-2057-01 11 70505938 70505938 T A SHANK2 Missense_Mutation p.I687F 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-13-2057-01 11 70505939 70505939 C T SHANK2 Silent p.L686L 0.11 TCGA-13-2057-01 11 73881914 73881914 A G C2CD3 5'UTR 0.12 TCGA-13-2057-01 11 75277514 75277514 G A SERPINH1 Silent p.A40A 0.09 TCGA-13-2057-01 11 76257032 76257032 G T C11orf30 Missense_Mutation p.M1155I 0.14 deleterious_low_confidence(0.03) benign(0.003) TCGA-13-2057-01 11 7960143 7960143 C A OR10A3 Missense_Mutation p.V309L 0.17 tolerated(0.44) benign(0.008) TCGA-13-2057-01 11 82972977 82972977 C G CCDC90B Missense_Mutation p.L247F 0.17 deleterious(0) benign(0.29) TCGA-13-2057-01 12 10217343 10217343 G C CLEC9A Missense_Mutation p.G162R 0.03 tolerated(0.58) benign(0.015) TCGA-13-2057-01 12 104171610 104171610 C A NT5DC3 Missense_Mutation p.K548N 0.20 deleterious_low_confidence(0) benign(0.038) TCGA-13-2057-01 12 111923090 111923092 TGG ATATGT ATXN2 Nonsense_Mutation p.A994_K995delinsDI* 0.21 TCGA-13-2057-01 12 112926907 112926907 A T PTPN11 Silent p.A509A 0.14 TCGA-13-2057-01 12 118456889 118456889 C T RFC5 Silent p.Y26Y 0.19 TCGA-13-2057-01 12 121202821 121202821 G A SPPL3 Missense_Mutation p.S379F 0.83 deleterious(0.01) possibly_damaging(0.641) TCGA-13-2057-01 12 133281267 133281267 G C PXMP2 Silent p.G194G 0.04 TCGA-13-2057-01 12 20893234 20893234 T C SLCO1C1 Silent p.L555L 0.05 TCGA-13-2057-01 12 21689911 21689911 G A GYS2 Silent p.L697L 0.06 TCGA-13-2057-01 12 49726842 49726842 C T C1QL4 Missense_Mutation p.D238N 0.03 deleterious(0.01) possibly_damaging(0.84) TCGA-13-2057-01 12 49854778 49854778 G C SPATS2 5'UTR 0.13 TCGA-13-2057-01 12 53207405 53207405 G C KRT4 Missense_Mutation p.N146K 0.05 deleterious(0) possibly_damaging(0.779) TCGA-13-2057-01 12 55886923 55886923 C A OR6C68 Silent p.I254I 0.08 TCGA-13-2057-01 12 55945675 55945675 C A OR6C4 Missense_Mutation p.T222N 0.09 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-13-2057-01 12 57965903 57965903 A G KIF5A Silent p.Q474Q 0.11 TCGA-13-2057-01 12 6219729 6219729 A C VWF Missense_Mutation p.S115A 0.06 deleterious(0) benign(0.344) TCGA-13-2057-01 12 6884606 6884606 A G LAG3 Missense_Mutation p.T317A 0.07 tolerated(0.2) benign(0.171) TCGA-13-2057-01 12 7548985 7548985 C A CD163L1 Missense_Mutation p.V586L 0.07 tolerated(0.07) benign(0.089) TCGA-13-2057-01 12 75816702 75816702 A C GLIPR1L2 Missense_Mutation p.R201S 0.17 deleterious(0.03) benign(0.122) TCGA-13-2057-01 12 81102838 81102838 G T MYF6 3'UTR 0.12 TCGA-13-2057-01 12 81647107 81647107 G C ACSS3 Missense_Mutation p.V581L 0.16 deleterious(0.02) benign(0.04) TCGA-13-2057-01 13 111953827 111953827 G T ARHGEF7 Missense_Mutation p.S589I 0.21 deleterious(0.02) probably_damaging(0.97) TCGA-13-2057-01 13 22275396 22275396 C A FGF9 Nonsense_Mutation p.S150* 0.18 TCGA-13-2057-01 13 27259836 27259836 A G WASF3 Missense_Mutation p.K455E 0.21 deleterious(0) probably_damaging(0.998) TCGA-13-2057-01 13 28195943 28195943 T G POLR1D 5'UTR 0.55 TCGA-13-2057-01 13 28834642 28834642 C G PAN3 Missense_Mutation p.P436R 0.22 deleterious(0.02) possibly_damaging(0.567) TCGA-13-2057-01 13 92408650 92408650 G A GPC5 Nonsense_Mutation p.W419* 0.57 TCGA-13-2057-01 14 20876541 20876541 G A TEP1 Missense_Mutation p.R20W 0.12 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-13-2057-01 14 20979306 20979306 T A RNASE10 3'UTR 0.14 TCGA-13-2057-01 14 21488660 21488660 G A NDRG2 Missense_Mutation p.H184Y 0.04 tolerated(0.12) probably_damaging(0.939) TCGA-13-2057-01 14 61746806 61746806 G A TMEM30B 3'UTR 0.16 TCGA-13-2057-01 14 64749779 64749779 G A ESR2 5'UTR 0.10 TCGA-13-2057-01 14 70515607 70515607 T C SLC8A3 Missense_Mutation p.I762V 0.11 deleterious(0.03) benign(0.098) TCGA-13-2057-01 14 81994074 81994074 C T SEL1L Missense_Mutation p.G27S 0.36 tolerated_low_confidence(0.09) benign(0.012) TCGA-13-2057-01 14 88945477 88945477 G A PTPN21 Silent p.D766D 0.20 TCGA-13-2057-01 14 93398964 93398964 C T CHGA Missense_Mutation p.T353M 0.09 deleterious(0.01) probably_damaging(0.934) TCGA-13-2057-01 15 23811058 23811058 T C MKRN3 Silent p.A43A 0.23 TCGA-13-2057-01 15 23931868 23931868 G A NDN Missense_Mutation p.A166V 0.38 tolerated(0.23) possibly_damaging(0.654) TCGA-13-2057-01 15 25207325 25207325 C G SNURF Missense_Mutation p.R27G 0.15 tolerated_low_confidence(0.29) benign(0.376) TCGA-13-2057-01 15 50519219 50519219 C T SLC27A2 Missense_Mutation p.P434L 0.18 deleterious(0) probably_damaging(0.967) TCGA-13-2057-01 15 91463086 91463086 A G MAN2A2 3'UTR 0.24 TCGA-13-2057-01 16 3297177 3297177 G T MEFV Missense_Mutation p.Q476K 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-13-2057-01 17 10309462 10309462 C G MYH8 Silent p.L776L 0.13 TCGA-13-2057-01 17 10398388 10398388 C A MYH1 Nonsense_Mutation p.E1776* 0.17 TCGA-13-2057-01 17 11687843 11687843 C A DNAH9 Missense_Mutation p.A2683D 0.09 possibly_damaging(0.616) TCGA-13-2057-01 17 16722666 16722666 T A AC022596.6 RNA 0.08 TCGA-13-2057-01 17 18769234 18769234 T G PRPSAP2 Missense_Mutation p.S30A 0.77 tolerated(0.6) benign(0.006) TCGA-13-2057-01 17 42188140 42188140 C T HDAC5 Silent p.L18L 0.15 TCGA-13-2057-01 17 42290252 42290252 G A UBTF Missense_Mutation p.P199S 0.08 tolerated(0.09) possibly_damaging(0.612) TCGA-13-2057-01 17 4713274 4713274 G A PLD2 Silent p.G270G 0.14 TCGA-13-2057-01 17 48264224 48264224 G C COL1A1 Missense_Mutation p.D1197E 0.20 unknown(0) TCGA-13-2057-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.88 tolerated(0.11) benign(0.308) TCGA-13-2057-01 17 78933951 78933951 G C RPTOR Missense_Mutation p.G1184A 0.16 deleterious(0) probably_damaging(0.974) TCGA-13-2057-01 18 29340258 29340258 C T SLC25A52 Missense_Mutation p.V133M 0.10 tolerated(0.32) benign(0.016) TCGA-13-2057-01 18 31432759 31432759 G A NOL4 3'UTR 0.28 TCGA-13-2057-01 18 76753293 76753293 G A SALL3 Silent p.A434A 0.25 TCGA-13-2057-01 18 77894081 77894081 A G ADNP2 Missense_Mutation p.K262R 0.29 deleterious(0.05) probably_damaging(0.987) TCGA-13-2057-01 19 10426385 10426385 C T FDX1L Missense_Mutation p.D66N 0.11 deleterious(0.02) benign(0.018) TCGA-13-2057-01 19 11665168 11665168 C T ELOF1 5'UTR 0.14 TCGA-13-2057-01 19 13941757 13941757 C T ZSWIM4 Silent p.L955L 0.04 TCGA-13-2057-01 19 15230869 15230869 T C ILVBL Missense_Mutation p.N247S 0.06 tolerated(0.12) benign(0.041) TCGA-13-2057-01 19 16964979 16964979 A C SIN3B Missense_Mutation p.E322A 0.05 deleterious(0.05) benign(0.3) TCGA-13-2057-01 19 19748984 19748984 T A GMIP Missense_Mutation p.E258V 0.09 deleterious(0) probably_damaging(0.988) TCGA-13-2057-01 19 20607610 20607610 G A ZNF826P RNA 0.07 TCGA-13-2057-01 19 36831637 36831637 C G ZFP14 Missense_Mutation p.G364A 0.12 deleterious(0) probably_damaging(0.999) TCGA-13-2057-01 19 42396676 42396676 C G ARHGEF1 Missense_Mutation p.R139G 0.20 deleterious(0) probably_damaging(0.948) TCGA-13-2057-01 19 47920456 47920456 C A MEIS3 Missense_Mutation p.R55M 0.07 deleterious(0) probably_damaging(0.909) TCGA-13-2057-01 19 49539136 49539136 G A CGB1 Silent p.L67L 0.30 TCGA-13-2057-01 19 51456033 51456033 G A KLK5 5'UTR 0.18 TCGA-13-2057-01 19 51527565 51527565 G C KLK11 Missense_Mutation p.R99G 0.07 tolerated(0.3) benign(0.28) TCGA-13-2057-01 19 54502965 54502965 G T CACNG6 Missense_Mutation p.V162L 0.21 tolerated(0.21) benign(0.351) TCGA-13-2057-01 19 54849490 54849490 G A LILRA4 Silent p.T124T 0.28 TCGA-13-2057-01 19 55494397 55494397 G A NLRP2 Missense_Mutation p.R444Q 0.10 tolerated(0.91) benign(0.004) TCGA-13-2057-01 19 58190250 58190250 C T ZSCAN4 Missense_Mutation p.P427S 0.30 tolerated(0.5) benign(0.031) TCGA-13-2057-01 19 632926 632926 C T POLRMT Missense_Mutation p.G34D 0.18 deleterious_low_confidence(0) possibly_damaging(0.575) TCGA-13-2057-01 19 8576377 8576377 C T ZNF414 Silent p.A306A 0.05 TCGA-13-2057-01 19 9965174 9965174 G C OLFM2 Missense_Mutation p.D351E 0.04 tolerated(0.15) benign(0.097) TCGA-13-2057-01 1 112999421 112999421 G A CTTNBP2NL Missense_Mutation p.R436H 0.06 tolerated(0.06) probably_damaging(0.998) TCGA-13-2057-01 1 120050202 120050202 T C HSD3B1 Silent p.L35L 0.19 TCGA-13-2057-01 1 12941996 12941996 T A PRAMEF4 Missense_Mutation p.K185M 0.20 deleterious(0) probably_damaging(0.989) TCGA-13-2057-01 1 13669125 13669125 C T PRAMEF14 Missense_Mutation p.S402N 0.27 tolerated(0.52) benign(0.053) TCGA-13-2057-01 1 146757008 146757008 T C CHD1L Missense_Mutation p.I621T 0.15 tolerated(0.2) benign(0.004) TCGA-13-2057-01 1 155028902 155028902 C G ADAM15 Missense_Mutation p.Q319E 0.55 tolerated(0.46) probably_damaging(0.997) TCGA-13-2057-01 1 161192750 161192750 A C APOA2 Missense_Mutation p.L48R 0.07 deleterious(0) probably_damaging(0.999) TCGA-13-2057-01 1 161594405 161594409 GATGA - FCGR3B Frame_Shift_Del p.S236Ifs*43 0.09 TCGA-13-2057-01 1 161595976 161595976 T G FCGR3B Missense_Mutation p.K215T 0.14 tolerated(0.92) benign(0.433) TCGA-13-2057-01 1 168250310 168250310 C T TBX19 5'UTR 0.10 TCGA-13-2057-01 1 173552738 173552738 G C SLC9C2 Missense_Mutation p.L183V 0.15 tolerated(0.07) benign(0.22) TCGA-13-2057-01 1 204124169 204124169 C T REN Missense_Mutation p.R399H 0.14 deleterious(0) probably_damaging(0.999) TCGA-13-2057-01 1 227169789 227169789 G C ADCK3 Silent p.V264V 0.14 TCGA-13-2057-01 1 227333403 227333403 C A CDC42BPA Silent p.V310V 0.10 TCGA-13-2057-01 1 229772557 229772557 C T URB2 Missense_Mutation p.L733F 0.17 tolerated(0.49) benign(0.293) TCGA-13-2057-01 1 236647899 236647899 C T EDARADD 3'Flank 0.13 TCGA-13-2057-01 1 242162259 242162259 T A MAP1LC3C Missense_Mutation p.S18C 0.12 tolerated(0.12) benign(0.014) TCGA-13-2057-01 1 244735971 244735971 A T C1orf101 Missense_Mutation p.N616I 0.09 deleterious(0) probably_damaging(0.998) TCGA-13-2057-01 1 34015936 34015936 G C CSMD2 Missense_Mutation p.H2776D 0.06 tolerated(0.32) benign(0.012) TCGA-13-2057-01 1 34158543 34158543 C T CSMD2 Missense_Mutation p.G1307S 0.09 deleterious(0.02) possibly_damaging(0.744) TCGA-13-2057-01 1 89522708 89522708 C T GBP1 Silent p.V328V 0.09 TCGA-13-2057-01 1 92441967 92441967 T G BRDT Missense_Mutation p.V197G 0.03 deleterious(0.04) benign(0.024) TCGA-13-2057-01 1 93602309 93602309 C G MTF2 Missense_Mutation p.L503V 0.04 tolerated(0.51) benign(0.027) TCGA-13-2057-01 20 39794389 39794389 C G PLCG1 Missense_Mutation p.I574M 0.15 tolerated(0.18) benign(0.023) TCGA-13-2057-01 20 42275644 42275644 T A IFT52 3'UTR 0.03 TCGA-13-2057-01 20 44006229 44006229 C G TP53TG5 Missense_Mutation p.E25Q 0.12 deleterious(0.05) benign(0.027) TCGA-13-2057-01 20 44486545 44486545 C T ZSWIM3 Silent p.S27S 0.13 TCGA-13-2057-01 20 44639655 44639655 C T MMP9 Silent p.D205D 0.09 TCGA-13-2057-01 21 30257615 30257615 G T N6AMT1 Missense_Mutation p.A18D 0.14 benign(0) TCGA-13-2057-01 21 35445875 35445875 C G MRPS6 5'UTR 0.29 TCGA-13-2057-01 21 45789181 45789181 C T TRPM2 Silent p.A242A 0.18 TCGA-13-2057-01 21 45797639 45797639 G A TRPM2 Missense_Mutation p.G333S 0.21 deleterious(0) probably_damaging(0.999) TCGA-13-2057-01 21 48080756 48080756 T G PRMT2 Missense_Mutation p.V281G 0.22 tolerated(0.18) possibly_damaging(0.521) TCGA-13-2057-01 22 35947653 35947653 C G RASD2 Missense_Mutation p.N125K 0.20 tolerated(0.21) probably_damaging(0.95) TCGA-13-2057-01 22 42610753 42610753 G A TCF20 Missense_Mutation p.L187F 0.23 possibly_damaging(0.771) TCGA-13-2057-01 22 50869811 50869811 C T PPP6R2 Silent p.H446H 0.39 TCGA-13-2057-01 2 101905450 101905450 C T RNF149 Missense_Mutation p.R283K 0.11 deleterious(0) probably_damaging(0.999) TCGA-13-2057-01 2 105472801 105472801 C T POU3F3 Missense_Mutation p.A278V 0.45 tolerated_low_confidence(0.57) benign(0.002) TCGA-13-2057-01 2 107040641 107040641 T G RGPD3 Missense_Mutation p.D1261A 0.18 deleterious(0.01) possibly_damaging(0.519) TCGA-13-2057-01 2 10729817 10729817 G C NOL10 Missense_Mutation p.Q495E 0.06 tolerated(0.22) benign(0.405) TCGA-13-2057-01 2 127825762 127825762 G C BIN1 Missense_Mutation p.Q197E 0.10 deleterious(0) probably_damaging(0.999) TCGA-13-2057-01 2 189899804 189899804 G C COL5A2 Silent p.A1397A 0.11 TCGA-13-2057-01 2 197951438 197951438 C T ANKRD44 Missense_Mutation p.G403R 0.09 deleterious(0) probably_damaging(1) TCGA-13-2057-01 2 203630463 203630463 A C FAM117B Missense_Mutation p.E582D 0.10 tolerated_low_confidence(0.22) unknown(0) TCGA-13-2057-01 2 21235422 21235422 C A APOB Missense_Mutation p.V1440L 0.13 probably_damaging(0.978) TCGA-13-2057-01 2 231941813 231941813 G A PSMD1 Silent p.E336E 0.09 TCGA-13-2057-01 2 233321381 233321381 C T ALPI Silent p.R92R 0.09 TCGA-13-2057-01 2 235951006 235951006 G A SH3BP4 Silent p.L531L 0.23 TCGA-13-2057-01 2 240005875 240005875 C G HDAC4 Silent p.V831V 0.04 TCGA-13-2057-01 2 27375590 27375590 G T TCF23 Missense_Mutation p.G167V 0.14 tolerated(0.06) probably_damaging(0.999) TCGA-13-2057-01 2 37240995 37240995 C - HEATR5B Frame_Shift_Del p.A1425Lfs*10 0.12 TCGA-13-2057-01 2 37353473 37353473 G A EIF2AK2 Silent p.D289D 0.09 TCGA-13-2057-01 2 46986359 46986359 G A SOCS5 Nonsense_Mutation p.W230* 0.10 TCGA-13-2057-01 2 74699549 74699549 G C MRPL53 Silent p.L47L 0.10 TCGA-13-2057-01 2 87042774 87042774 T C CD8B Missense_Mutation p.T230A 0.11 tolerated_low_confidence(0.51) benign(0.388) TCGA-13-2057-01 3 112729532 112729532 A T C3orf17 Missense_Mutation p.D311E 0.08 deleterious(0) probably_damaging(0.999) TCGA-13-2057-01 3 119378911 119378911 C T POPDC2 Silent p.Q120Q 0.08 TCGA-13-2057-01 3 121828111 121828111 G C CD86 Splice_Site p.X235_splice 0.08 TCGA-13-2057-01 3 125695950 125695950 T G ROPN1B Missense_Mutation p.F113C 0.11 tolerated(0.31) probably_damaging(0.989) TCGA-13-2057-01 3 125726056 125726056 G A SLC41A3 Silent p.L423L 0.16 TCGA-13-2057-01 3 130682849 130682849 A T ATP2C1 Missense_Mutation p.I346F 0.14 deleterious(0) possibly_damaging(0.708) TCGA-13-2057-01 3 138174076 138174076 A G ESYT3 Missense_Mutation p.E137G 0.13 deleterious(0) probably_damaging(0.997) TCGA-13-2057-01 3 138413688 138413688 T A PIK3CB Missense_Mutation p.D611V 0.17 deleterious(0) probably_damaging(0.998) TCGA-13-2057-01 3 164906711 164906711 T A SLITRK3 Silent p.P636P 0.07 TCGA-13-2057-01 3 35778833 35778833 G T ARPP21 Missense_Mutation p.M507I 0.29 tolerated(0.17) benign(0.002) TCGA-13-2057-01 3 46944896 46944896 G A PTH1R Missense_Mutation p.R511H 0.45 deleterious(0.02) probably_damaging(0.98) TCGA-13-2057-01 3 48658923 48658923 C A TMEM89 Silent p.R89R 0.18 TCGA-13-2057-01 3 57484095 57484095 G A DNAH12 3'UTR 0.17 TCGA-13-2057-01 3 9786009 9786009 A C BRPF1 Silent p.R913R 0.33 TCGA-13-2057-01 4 113303690 113303690 C T ALPK1 Silent p.A86A 0.19 TCGA-13-2057-01 4 141489931 141489931 A T UCP1 5'UTR 0.17 TCGA-13-2057-01 4 57261535 57261535 C G PPAT Missense_Mutation p.V513L 0.14 tolerated(0.16) probably_damaging(0.996) TCGA-13-2057-01 4 84377110 84377118 GGGTCCTCA - MRPS18C 5'UTR 0.25 TCGA-13-2057-01 4 88026961 88026961 C A AFF1 Missense_Mutation p.T447N 0.16 deleterious(0.03) unknown(0) TCGA-13-2057-01 5 1078822 1078822 C T SLC12A7 Missense_Mutation p.R483Q 0.22 deleterious(0) possibly_damaging(0.877) TCGA-13-2057-01 5 137501717 137501717 T C BRD8 Missense_Mutation p.I360V 0.05 tolerated(0.21) possibly_damaging(0.562) TCGA-13-2057-01 5 140503211 140503211 C T PCDHB4 Missense_Mutation p.A544V 0.21 tolerated(0.06) benign(0.177) TCGA-13-2057-01 5 153372545 153372545 T C FAM114A2 Silent p.L503L 0.24 TCGA-13-2057-01 5 39383071 39383071 C T DAB2 Silent p.P330P 0.24 TCGA-13-2057-01 5 41153978 41153978 A T C6 Missense_Mutation p.S742T 0.18 tolerated(0.56) benign(0.015) TCGA-13-2057-01 5 43659363 43659363 G T NNT Nonsense_Mutation p.E849* 0.15 TCGA-13-2057-01 6 106553135 106553135 C T PRDM1 Missense_Mutation p.S367F 0.04 tolerated(0.1) benign(0.001) TCGA-13-2057-01 6 106960330 106960330 G C AIM1 Silent p.A38A 0.03 TCGA-13-2057-01 6 108985552 108985552 C T FOXO3 Missense_Mutation p.R506C 0.02 deleterious(0) probably_damaging(0.948) TCGA-13-2057-01 6 111654562 111654562 C T REV3L Silent p.V2563V 0.08 TCGA-13-2057-01 6 117923308 117923308 C T GOPC Silent p.V48V 0.06 TCGA-13-2057-01 6 123102275 123102275 T G FABP7 Missense_Mutation p.I95R 0.10 deleterious(0.01) benign(0.07) TCGA-13-2057-01 6 126199466 126199466 A G NCOA7 Missense_Mutation p.K137E 0.09 tolerated(0.5) possibly_damaging(0.816) TCGA-13-2057-01 6 130536361 130536361 C A SAMD3 Nonsense_Mutation p.E20* 0.20 TCGA-13-2057-01 6 133055688 133055688 T C VNN3 Silent p.E48E 0.08 TCGA-13-2057-01 6 153076417 153076417 G T VIP Missense_Mutation p.A82S 0.16 deleterious(0.01) possibly_damaging(0.884) TCGA-13-2057-01 6 161027642 161027642 A C LPA Silent p.P884P 0.25 TCGA-13-2057-01 6 17629080 17629080 A T NUP153 Missense_Mutation p.V1117D 0.15 deleterious(0) benign(0.365) TCGA-13-2057-01 6 28228189 28228189 G A NKAPL Missense_Mutation p.R347H 0.07 tolerated(0.07) possibly_damaging(0.813) TCGA-13-2057-01 6 31599151 31599151 A T PRRC2A Nonsense_Mutation p.K901* 0.22 TCGA-13-2057-01 6 32012919 32012919 G A TNXB Silent p.P26P 0.11 TCGA-13-2057-01 6 46657503 46657503 G T TDRD6 Missense_Mutation p.K546N 0.14 tolerated(0.05) probably_damaging(0.995) TCGA-13-2057-01 6 47254313 47254313 T C TNFRSF21 Missense_Mutation p.T39A 0.14 tolerated_low_confidence(0.33) benign(0) TCGA-13-2057-01 6 5771532 5771532 A G FARS2 Missense_Mutation p.K409R 0.13 tolerated(1) benign(0.015) TCGA-13-2057-01 6 7230933 7230933 C T RREB1 Silent p.N867N 0.08 TCGA-13-2057-01 6 74119052 74119052 A T DDX43 Missense_Mutation p.R421W 0.03 deleterious(0.01) probably_damaging(1) TCGA-13-2057-01 6 76715085 76715085 C G IMPG1 Missense_Mutation p.A352P 0.13 deleterious(0.03) benign(0.048) TCGA-13-2057-01 6 86181255 86181255 A G NT5E Intron 0.14 TCGA-13-2057-01 6 90354776 90354776 A G MDN1 Silent p.N5520N 0.09 TCGA-13-2057-01 6 99729275 99729275 G C FAXC Missense_Mutation p.P332R 0.05 deleterious(0) probably_damaging(0.997) TCGA-13-2057-01 7 110762876 110762876 C T LRRN3 Silent p.I16I 0.13 TCGA-13-2057-01 7 148287992 148287992 C T C7orf33 5'UTR 0.31 TCGA-13-2057-01 7 158526938 158526938 T A ESYT2 Missense_Mutation p.D881V 0.22 deleterious(0.04) possibly_damaging(0.852) TCGA-13-2057-01 7 31008682 31008682 C T GHRHR Silent p.C55C 0.79 TCGA-13-2057-01 7 31862801 31862801 C T PDE1C Missense_Mutation p.G550R 0.08 deleterious(0.05) probably_damaging(0.984) TCGA-13-2057-01 7 72727266 72727266 C T TRIM50 Missense_Mutation p.R372H 0.34 deleterious(0) probably_damaging(1) TCGA-13-2057-01 7 76134842 76134842 A T DTX2 Missense_Mutation p.D598V 0.11 deleterious(0) probably_damaging(0.997) TCGA-13-2057-01 7 99689372 99689372 G A COPS6 Missense_Mutation p.R315Q 0.22 deleterious(0.01) probably_damaging(0.954) TCGA-13-2057-01 8 100711788 100711788 G A VPS13B Missense_Mutation p.A2053T 0.10 tolerated(0.08) benign(0.066) TCGA-13-2057-01 8 144695058 144695058 C A TSTA3 3'UTR 0.15 TCGA-13-2057-01 8 144732524 144732524 G T ZNF623 Missense_Mutation p.G161V 0.24 tolerated(0.07) benign(0.067) TCGA-13-2057-01 8 195538 195538 G A ZNF596 Missense_Mutation p.A231T 0.11 tolerated(0.24) benign(0.132) TCGA-13-2057-01 8 22212974 22212974 C G PIWIL2 Missense_Mutation p.H960D 0.15 tolerated(0.18) benign(0.053) TCGA-13-2057-01 8 38835667 38835667 G A HTRA4 Splice_Site p.X322_splice 0.18 TCGA-13-2057-01 8 51351155 51351155 T C SNTG1 Missense_Mutation p.I72T 0.11 deleterious(0) possibly_damaging(0.524) TCGA-13-2057-01 8 68340317 68340317 A T CPA6 Missense_Mutation p.V364E 0.06 deleterious(0.01) possibly_damaging(0.678) TCGA-13-2057-01 8 91057177 91057177 T G DECR1 Missense_Mutation p.L280R 0.21 deleterious(0) probably_damaging(1) TCGA-13-2057-01 9 100692514 100692514 G A HEMGN Missense_Mutation p.T388I 0.15 tolerated(0.09) probably_damaging(0.934) TCGA-13-2057-01 9 109685767 109685767 G T ZNF462 Missense_Mutation p.D35Y 0.21 possibly_damaging(0.861) TCGA-13-2057-01 9 117826306 117826306 C G TNC Missense_Mutation p.G1177R 0.41 tolerated(0.11) benign(0.11) TCGA-13-2057-01 9 127952012 127952012 G C PPP6C 5'UTR 0.24 TCGA-13-2057-01 9 132816169 132816169 G C GPR107 5'UTR 0.21 TCGA-13-2057-01 9 136532046 136532051 CGTCCA - SARDH Intron 0.23 TCGA-13-2057-01 9 138903816 138903816 G T NACC2 Missense_Mutation p.A437D 0.11 deleterious(0) probably_damaging(0.998) TCGA-13-2057-01 9 140707940 140707940 G C EHMT1 Silent p.V1046V 0.20 TCGA-13-2057-01 9 19346683 19346684 AG - DENND4C Frame_Shift_Del p.E1258Gfs*34 0.46 TCGA-13-2057-01 9 32552577 32552577 C G NDUFB6 3'Flank 0.31 TCGA-13-2057-01 9 35733472 35733472 C G CREB3 Missense_Mutation p.P142R 0.18 deleterious(0) probably_damaging(1) TCGA-13-2057-01 9 4117803 4117803 T A GLIS3 Nonsense_Mutation p.R559* 0.23 TCGA-13-2057-01 9 4663126 4663126 G A PPAPDC2 Missense_Mutation p.V251I 0.19 tolerated(0.15) benign(0.036) TCGA-13-2057-01 9 6536105 6536105 T A GLDC Missense_Mutation p.I933F 0.28 deleterious(0) possibly_damaging(0.894) TCGA-13-2057-01 9 79946928 79946928 A G VPS13A Missense_Mutation p.I1998M 0.35 deleterious(0.03) benign(0.141) TCGA-13-2057-01 9 96439081 96439081 C T PHF2 Missense_Mutation p.P1013L 0.26 tolerated(0.31) unknown(0) TCGA-13-2057-01 X 101908975 101908975 A T GPRASP1 Missense_Mutation p.Q45L 0.07 deleterious(0) possibly_damaging(0.587) TCGA-13-2057-01 X 128901659 128901659 T C XPNPEP2 Silent p.S607S 0.12 TCGA-13-2057-01 X 12903901 12903901 G A TLR7 Missense_Mutation p.V92I 0.17 tolerated(0.26) benign(0.005) TCGA-13-2057-01 X 150154644 150154644 A T HMGB3 Missense_Mutation p.N91Y 0.11 deleterious(0) probably_damaging(0.944) TCGA-13-2057-01 X 151092588 151092588 T A MAGEA4 Missense_Mutation p.I151N 0.37 deleterious(0) probably_damaging(1) TCGA-13-2057-01 X 153175368 153175368 C G ARHGAP4 Silent p.G787G 0.44 TCGA-13-2057-01 X 47497543 47497543 C T ELK1 Silent p.S231S 0.32 TCGA-13-2057-01 X 49142461 49142461 C A PPP1R3F Missense_Mutation p.P437T 0.29 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-13-2057-01 X 54836166 54836166 A T MAGED2 Silent p.S19S 0.38 TCGA-13-2057-01 X 66942818 66942818 G C AR Missense_Mutation p.V867L 0.11 tolerated(0.89) benign(0.268) TCGA-13-2057-01 X 75650185 75650185 T C MAGEE1 Missense_Mutation p.F621S 0.32 deleterious(0) probably_damaging(0.999) TCGA-13-2057-01 X 79932616 79932616 T A BRWD3 Missense_Mutation p.D1634V 0.20 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-13-2057-01 X 84526250 84526250 C T ZNF711 Missense_Mutation p.P568S 0.13 tolerated(0.43) probably_damaging(0.946) TCGA-13-2059-01 10 105971787 105971787 C A WDR96 Missense_Mutation p.G238V 0.08 deleterious(0) probably_damaging(0.978) TCGA-13-2059-01 10 1066733 1066733 C T IDI2 Missense_Mutation p.A114T 0.03 tolerated(0.24) probably_damaging(0.93) TCGA-13-2059-01 10 121677541 121677541 G T SEC23IP Missense_Mutation p.A580S 0.44 tolerated(0.08) possibly_damaging(0.653) TCGA-13-2059-01 10 134012382 134012382 G C DPYSL4 Missense_Mutation p.V240L 0.23 deleterious(0.05) benign(0.034) TCGA-13-2059-01 10 24908448 24908452 CGAGG - ARHGAP21 Frame_Shift_Del p.A791Efs*17 0.18 TCGA-13-2059-01 10 26286103 26286103 C A MYO3A Missense_Mutation p.H142N 0.12 deleterious(0) probably_damaging(1) TCGA-13-2059-01 10 33468874 33468884 CCTGAGAAAAG - NRP1 3'UTR 0.18 TCGA-13-2059-01 10 34620222 34620222 A T PARD3 Missense_Mutation p.S889T 0.04 deleterious(0) probably_damaging(0.998) TCGA-13-2059-01 11 119025492 119025498 CTGACGG - ABCG4 Frame_Shift_Del p.L185Hfs*4 0.38 TCGA-13-2059-01 11 18387486 18387486 G T GTF2H1 3'UTR 0.30 TCGA-13-2059-01 11 4608093 4608093 C T OR52I2 Silent p.C17C 0.12 TCGA-13-2059-01 11 57147165 57147165 T A PRG3 Silent p.A59A 0.04 TCGA-13-2059-01 11 7531332 7531332 C T OLFML1 Silent p.N374N 0.36 TCGA-13-2059-01 12 10959410 10959410 C A TAS2R8 Missense_Mutation p.C57F 0.09 tolerated(0.13) benign(0.445) TCGA-13-2059-01 12 11061238 11061278 TCTGTGTCCTTTGTAATTGAGTTGCATTTTCTGGAGATGTT - TAS2R13 Frame_Shift_Del p.K207Rfs*23 0.08 TCGA-13-2059-01 12 12482876 12482876 C T MANSC1 3'UTR 0.14 TCGA-13-2059-01 12 13717461 13717461 G A GRIN2B Missense_Mutation p.T904M 0.14 deleterious(0) probably_damaging(0.999) TCGA-13-2059-01 12 2690847 2690847 A T CACNA1C Missense_Mutation p.I663F 0.14 tolerated(0.06) possibly_damaging(0.748) TCGA-13-2059-01 12 30784826 30784826 G A IPO8 Intron 0.08 TCGA-13-2059-01 12 39751232 39751232 C G KIF21A Missense_Mutation p.R408T 0.24 deleterious(0) probably_damaging(0.997) TCGA-13-2059-01 12 5021391 5021391 G A KCNA1 Missense_Mutation p.E283K 0.03 tolerated(0.12) benign(0.055) TCGA-13-2059-01 12 53823958 53823958 C T AMHR2 Silent p.A439A 0.36 TCGA-13-2059-01 12 53823960 53823960 A T AMHR2 Missense_Mutation p.Y440F 0.36 tolerated(0.97) benign(0.418) TCGA-13-2059-01 12 68717004 68717004 C G MDM1 Missense_Mutation p.S217T 0.31 deleterious(0) benign(0.381) TCGA-13-2059-01 12 9845471 9845471 G C CLEC2D Silent p.L135L 0.09 TCGA-13-2059-01 13 76179923 76179923 A G UCHL3 Missense_Mutation p.N223S 0.03 tolerated(0.82) benign(0.003) TCGA-13-2059-01 13 99947951 99947951 C T GPR183 Missense_Mutation p.G150D 0.35 tolerated(0.2) benign(0.36) TCGA-13-2059-01 14 20841695 20841695 C T TEP1 Missense_Mutation p.G2218R 0.36 deleterious(0) probably_damaging(1) TCGA-13-2059-01 14 20847159 20847159 C T TEP1 Missense_Mutation p.D1745N 0.08 deleterious(0.03) benign(0.025) TCGA-13-2059-01 14 21249961 21249961 G C RNASE6 Missense_Mutation p.E35Q 0.24 tolerated(0.13) possibly_damaging(0.562) TCGA-13-2059-01 14 60600950 60600950 G C PCNXL4 3'UTR 0.04 TCGA-13-2059-01 14 75483615 75483615 G C MLH3 3'UTR 0.27 TCGA-13-2059-01 14 92959964 92959964 G A SLC24A4 Missense_Mutation p.D621N 0.35 tolerated(0.1) benign(0.056) TCGA-13-2059-01 14 94756559 94756559 G T SERPINA10 Silent p.I124I 0.39 TCGA-13-2059-01 15 40659878 40659878 G A DISP2 Missense_Mutation p.G522D 0.17 deleterious(0.01) probably_damaging(0.991) TCGA-13-2059-01 15 90378845 90378853 CAGCCCGCG - C15orf38-AP3S2 In_Frame_Del p.A360_A362del 0.19 TCGA-13-2059-01 16 21215390 21215390 G C ZP2 Silent p.G311G 0.19 TCGA-13-2059-01 16 29831240 29831240 G T PAGR1 3'UTR 0.25 TCGA-13-2059-01 16 30732653 30732653 G C SRCAP Missense_Mutation p.V1133L 0.18 unknown(0) TCGA-13-2059-01 16 3455030 3455030 C T ZNF174 Intron 0.13 TCGA-13-2059-01 16 53737946 53737946 G A FTO 5'UTR 0.29 TCGA-13-2059-01 16 66575787 66575787 C T TK2 Missense_Mutation p.V76I 0.56 tolerated(1) benign(0.001) TCGA-13-2059-01 16 72991621 72991621 C A ZFHX3 Silent p.V808V 0.05 TCGA-13-2059-01 16 86612832 86612832 C G FOXL1 Missense_Mutation p.A168G 0.21 tolerated(0.54) benign(0.03) TCGA-13-2059-01 17 2139833 2139833 T G SMG6 Missense_Mutation p.Q941P 0.23 deleterious(0) probably_damaging(1) TCGA-13-2059-01 17 33586382 33586382 G C SLFN5 Missense_Mutation p.G225R 0.33 deleterious(0) probably_damaging(1) TCGA-13-2059-01 17 37881375 37881375 C G ERBB2 Missense_Mutation p.P856R 0.42 deleterious(0) probably_damaging(1) TCGA-13-2059-01 17 39726410 39726410 T G KRT9 Silent p.T235T 0.04 TCGA-13-2059-01 17 56440919 56440919 C G RNF43 Missense_Mutation p.D140H 0.73 deleterious(0) probably_damaging(1) TCGA-13-2059-01 17 7578395 7578395 G A TP53 Missense_Mutation p.H179Y 0.81 deleterious(0) probably_damaging(1) TCGA-13-2059-01 17 76562747 76562747 C G DNAH17 Silent p.T506T 0.04 TCGA-13-2059-01 17 78261940 78261940 C T RNF213 Silent p.F196F 0.38 TCGA-13-2059-01 17 78261942 78261942 A T RNF213 Missense_Mutation p.Q197L 0.38 benign(0.001) TCGA-13-2059-01 17 8159115 8159151 TCTCCTAGGTCTGGCTTTAGACTCTTGGGACCTAGAC - PFAS Splice_Site p.X192_splice 0.14 TCGA-13-2059-01 18 11753899 11753899 C T GNAL Silent p.D193D 0.18 TCGA-13-2059-01 18 44149596 44149596 G A LOXHD1 Missense_Mutation p.R685C 0.12 deleterious(0.04) probably_damaging(0.942) TCGA-13-2059-01 18 742923 742923 G C YES1 Nonsense_Mutation p.S352* 0.22 TCGA-13-2059-01 19 56423113 56423113 A G NLRP13 Silent p.S690S 0.30 TCGA-13-2059-01 19 57640847 57640847 A G USP29 Silent p.R268R 0.13 TCGA-13-2059-01 1 152283392 152283392 C T FLG Missense_Mutation p.D1324N 0.57 possibly_damaging(0.539) TCGA-13-2059-01 1 152595322 152595322 C T LCE3A Silent p.A86A 0.17 TCGA-13-2059-01 1 155735839 155735839 G A GON4L Missense_Mutation p.S1142F 0.10 deleterious_low_confidence(0) benign(0.141) TCGA-13-2059-01 1 201081382 201081382 C A CACNA1S Missense_Mutation p.R29L 0.29 deleterious(0) probably_damaging(0.996) TCGA-13-2059-01 1 247055222 247055222 C A AHCTF1 Splice_Site p.X611_splice 0.04 TCGA-13-2059-01 1 33160499 33160499 C T SYNC Silent p.R400R 0.29 TCGA-13-2059-01 1 43408904 43408904 G C SLC2A1 Missense_Mutation p.P36R 0.10 deleterious(0.01) probably_damaging(1) TCGA-13-2059-01 1 45477952 45477952 G T UROD Silent p.G5G 0.16 TCGA-13-2059-01 1 46033769 46033769 G T AKR1A1 Missense_Mutation p.A158S 0.64 tolerated(0.53) benign(0.046) TCGA-13-2059-01 1 55527225 55527225 A T PCSK9 Missense_Mutation p.E620V 0.30 tolerated(0.09) benign(0.092) TCGA-13-2059-01 1 57425840 57425840 C A C8B Missense_Mutation p.R34S 0.30 deleterious(0.05) benign(0.108) TCGA-13-2059-01 1 6202548 6202548 T A CHD5 Missense_Mutation p.T721S 0.48 deleterious(0.01) probably_damaging(0.968) TCGA-13-2059-01 1 6313948 6313948 G C GPR153 Missense_Mutation p.Q206E 0.13 tolerated(1) benign(0.078) TCGA-13-2059-01 1 86913415 86913415 A G CLCA2 Silent p.P646P 0.13 TCGA-13-2059-01 1 91809027 91809027 G A HFM1 Silent p.D765D 0.60 TCGA-13-2059-01 1 981234 981234 G T AGRN Silent p.L886L 0.15 TCGA-13-2059-01 20 2638892 2638892 C G NOP56 Missense_Mutation p.S579R 0.30 tolerated_low_confidence(0.24) benign(0.001) TCGA-13-2059-01 20 61162305 61162305 C G C20orf166 Missense_Mutation p.Q40E 0.27 deleterious_low_confidence(0) benign(0.092) TCGA-13-2059-01 21 28216738 28216738 G A ADAMTS1 Missense_Mutation p.A179V 0.51 tolerated(0.24) benign(0.035) TCGA-13-2059-01 21 30303480 30303480 G C LTN1 Missense_Mutation p.C1791W 0.15 deleterious(0) probably_damaging(1) TCGA-13-2059-01 2 120858304 120858304 G C EPB41L5 Silent p.V417V 0.09 TCGA-13-2059-01 2 179702064 179702064 G C CCDC141 Missense_Mutation p.F1294L 0.18 tolerated(0.3) benign(0.018) TCGA-13-2059-01 2 188225420 188225420 C A CALCRL Missense_Mutation p.W229L 0.03 deleterious(0) probably_damaging(1) TCGA-13-2059-01 2 197189874 197189874 C T HECW2 Splice_Site p.X191_splice 0.06 TCGA-13-2059-01 2 213872134 213872134 G C IKZF2 Missense_Mutation p.R511G 0.35 deleterious(0) benign(0.268) TCGA-13-2059-01 2 47710081 47710081 C T MSH2 Missense_Mutation p.T933I 0.05 deleterious_low_confidence(0.01) benign(0.024) TCGA-13-2059-01 3 121305004 121305004 T A ARGFX Missense_Mutation p.S169T 0.15 tolerated(0.4) benign(0.006) TCGA-13-2059-01 3 48452414 48452414 C G PLXNB1 Missense_Mutation p.G1760A 0.74 tolerated(0.06) benign(0.029) TCGA-13-2059-01 3 58635049 58635049 C G FAM3D Missense_Mutation p.K46N 0.30 tolerated(0.42) benign(0.007) TCGA-13-2059-01 5 114605435 114605435 G C CCDC112 Missense_Mutation p.Q465E 0.36 tolerated(1) benign(0) TCGA-13-2059-01 5 140167318 140167318 C T PCDHA1 Silent p.D481D 0.47 TCGA-13-2059-01 5 161324363 161324363 T A GABRA1 Missense_Mutation p.L436I 0.33 tolerated(0.16) probably_damaging(0.987) TCGA-13-2059-01 6 150240387 150240387 G A RAET1G Silent p.L141L 0.27 TCGA-13-2059-01 6 31734964 31734964 C T VWA7 Missense_Mutation p.G618D 0.27 deleterious(0.01) possibly_damaging(0.906) TCGA-13-2059-01 6 38825381 38825381 G T DNAH8 Missense_Mutation p.V1724L 0.22 benign(0) TCGA-13-2059-01 6 46657423 46657423 A C TDRD6 Missense_Mutation p.M520L 0.21 tolerated(0.1) benign(0.401) TCGA-13-2059-01 6 7583702 7583702 C T DSP Silent p.V2069V 0.11 TCGA-13-2059-01 6 80409218 80409218 G A SH3BGRL2 Missense_Mutation p.E106K 0.24 tolerated_low_confidence(0.07) benign(0.016) TCGA-13-2059-01 6 80409242 80409242 G C SH3BGRL2 3'UTR 0.24 TCGA-13-2059-01 7 100173920 100173920 T G LRCH4 Silent p.R527R 0.04 TCGA-13-2059-01 7 1026401 1026401 A T CYP2W1 Missense_Mutation p.S263C 0.15 deleterious(0) probably_damaging(0.992) TCGA-13-2059-01 7 110764433 110764459 TTCAGTTTTGGTGTCCTGGAAAGCAAG - LRRN3 In_Frame_Del p.V537_S545del 0.18 TCGA-13-2059-01 7 121691510 121691510 G C PTPRZ1 Missense_Mutation p.S2038T 0.15 tolerated(0.4) benign(0.018) TCGA-13-2059-01 7 142566375 142566375 G A EPHB6 Missense_Mutation p.V722M 0.14 deleterious(0.02) benign(0.171) TCGA-13-2059-01 7 144077224 144077224 G A ARHGEF5 3'UTR 0.14 TCGA-13-2059-01 7 17378784 17378784 T G AHR Silent p.T445T 0.14 TCGA-13-2059-01 7 2472615 2472615 G T CHST12 Missense_Mutation p.S114I 0.17 tolerated(0.19) benign(0.006) TCGA-13-2059-01 7 55980378 55980378 G T MRPS17 Nonsense_Mutation p.E4* 0.37 TCGA-13-2059-01 7 91829986 91829986 T C KRIT1 3'UTR 0.57 TCGA-13-2059-01 8 109215647 109215647 T C EIF3E Missense_Mutation p.K383E 0.14 deleterious(0) probably_damaging(0.942) TCGA-13-2059-01 8 142367108 142367108 C A GPR20 Missense_Mutation p.A306S 0.14 tolerated(0.5) benign(0.025) TCGA-13-2059-01 8 143381940 143381940 C A TSNARE1 Missense_Mutation p.M399I 0.71 tolerated(0.4) benign(0.001) TCGA-13-2059-01 8 145541028 145541028 C G DGAT1 Missense_Mutation p.Q354H 0.12 tolerated(0.13) benign(0.053) TCGA-13-2059-01 8 51449358 51449358 G T SNTG1 Missense_Mutation p.D224Y 0.31 deleterious(0) probably_damaging(0.96) TCGA-13-2059-01 8 54142199 54142199 G A OPRK1 Silent p.R267R 0.33 TCGA-13-2059-01 8 86358467 86358467 T G CA3 Missense_Mutation p.C202G 0.57 deleterious(0.01) probably_damaging(0.999) TCGA-13-2059-01 8 90994998 90994998 G A NBN Silent p.I41I 0.18 TCGA-13-2059-01 9 133911674 133911674 C G LAMC3 Missense_Mutation p.R311G 0.81 deleterious(0) probably_damaging(0.999) TCGA-13-2059-01 9 21334747 21334747 G C KLHL9 Missense_Mutation p.Q38E 0.04 tolerated(0.16) benign(0.004) TCGA-13-2059-01 9 26919314 26919314 A T PLAA Missense_Mutation p.F471I 0.18 deleterious(0) possibly_damaging(0.492) TCGA-13-2059-01 9 72895689 72895689 G A SMC5 Silent p.E231E 0.04 TCGA-13-2059-01 9 78710934 78710934 C T PCSK5 Silent p.S341S 0.24 TCGA-13-2059-01 9 87285599 87285599 C T NTRK2 5'UTR 0.05 TCGA-13-2059-01 X 138870386 138870386 T G ATP11C Silent p.S498S 0.05 TCGA-13-2059-01 X 29972793 29972793 T A IL1RAPL1 Missense_Mutation p.D452E 0.76 deleterious(0.04) probably_damaging(0.969) TCGA-13-2059-01 X 73745664 73745664 T A SLC16A2 Missense_Mutation p.L369H 0.15 deleterious(0) probably_damaging(0.934) TCGA-13-2061-01 10 123844480 123844480 C A TACC2 Missense_Mutation p.P822H 0.06 probably_damaging(1) TCGA-13-2061-01 10 123976247 123976247 A C TACC2 Missense_Mutation p.M2484L 0.08 possibly_damaging(0.542) TCGA-13-2061-01 10 17949602 17949602 A T MRC1L1 Silent p.T1322T 0.02 TCGA-13-2061-01 10 18087525 18087525 A G TMEM236 3'UTR 0.19 TCGA-13-2061-01 10 8115877 8115877 C A GATA3 Missense_Mutation p.P409H 0.44 deleterious(0.02) probably_damaging(0.989) TCGA-13-2061-01 10 98823972 98823972 G A SLIT1 Silent p.T194T 0.71 TCGA-13-2061-01 11 119212608 119212608 T A MFRP Missense_Mutation p.I492F 0.04 deleterious(0.01) benign(0.005) TCGA-13-2061-01 11 119213368 119213368 A C MFRP Missense_Mutation p.M442R 0.05 tolerated(0.34) benign(0.024) TCGA-13-2061-01 11 18158934 18158934 C A MRGPRX3 Missense_Mutation p.S62Y 0.46 deleterious(0.01) possibly_damaging(0.762) TCGA-13-2061-01 11 55653201 55653201 A - TRIM51 Frame_Shift_Del p.K100Rfs*42 0.35 TCGA-13-2061-01 11 56510658 56510658 G A OR9G4 Silent p.Y210Y 0.38 TCGA-13-2061-01 11 57983179 57983179 A T OR1S1 Missense_Mutation p.K321N 0.53 deleterious(0.03) possibly_damaging(0.517) TCGA-13-2061-01 11 57995525 57995525 C T OR10Q1 Missense_Mutation p.E275K 0.32 tolerated(0.28) possibly_damaging(0.458) TCGA-13-2061-01 11 59828789 59828789 G T MS4A3 Silent p.G52G 0.24 TCGA-13-2061-01 11 6238487 6238487 G A FAM160A2 Intron 0.52 TCGA-13-2061-01 11 63719735 63719735 C G NAA40 Missense_Mutation p.R61G 0.08 deleterious(0) possibly_damaging(0.596) TCGA-13-2061-01 12 122287595 122287595 T A HPD Missense_Mutation p.K172N 0.28 tolerated(0.47) benign(0.001) TCGA-13-2061-01 12 43770440 43770440 C G ADAMTS20 Missense_Mutation p.G1671A 0.29 deleterious(0) probably_damaging(1) TCGA-13-2061-01 12 53346480 53346480 A G KRT18 Intron 0.08 TCGA-13-2061-01 12 56081783 56081783 A T ITGA7 Missense_Mutation p.L1056Q 0.43 deleterious(0) possibly_damaging(0.572) TCGA-13-2061-01 13 53217286 53217286 G A HNRNPA1L2 Missense_Mutation p.G220E 0.33 tolerated(0.07) unknown(0) TCGA-13-2061-01 14 39900992 39900992 C A FBXO33 Silent p.L125L 0.72 TCGA-13-2061-01 14 47120967 47120967 C T RPL10L 5'UTR 0.15 TCGA-13-2061-01 14 61435208 61435208 T G MNAT1 3'UTR 0.55 TCGA-13-2061-01 14 71462632 71462632 C G PCNX Missense_Mutation p.H873Q 0.07 tolerated(0.55) benign(0.005) TCGA-13-2061-01 15 41279333 41279333 T A INO80 Missense_Mutation p.E1263V 0.73 deleterious(0) probably_damaging(0.991) TCGA-13-2061-01 15 41853482 41853482 C G TYRO3 Missense_Mutation p.S94R 0.07 deleterious(0.03) possibly_damaging(0.522) TCGA-13-2061-01 15 51799402 51799402 T A DMXL2 Missense_Mutation p.E898V 0.18 deleterious(0) probably_damaging(0.999) TCGA-13-2061-01 15 54025238 54025238 G T WDR72 Missense_Mutation p.Q37K 0.53 tolerated(0.08) possibly_damaging(0.642) TCGA-13-2061-01 15 72170562 72170562 C T MYO9A Missense_Mutation p.G1917E 0.45 tolerated(0.06) probably_damaging(1) TCGA-13-2061-01 15 75631422 75631422 T A COMMD4 Missense_Mutation p.L93Q 0.31 deleterious(0) probably_damaging(1) TCGA-13-2061-01 15 85384029 85384029 G A ALPK3 Missense_Mutation p.E709K 0.44 deleterious_low_confidence(0.02) possibly_damaging(0.504) TCGA-13-2061-01 16 23707269 23707269 G A ERN2 Missense_Mutation p.S567F 0.07 tolerated(0.06) probably_damaging(0.969) TCGA-13-2061-01 16 30134471 30134471 G T MAPK3 Silent p.V20V 0.17 TCGA-13-2061-01 16 30680487 30680487 C T FBRS Missense_Mutation p.R822W 0.47 possibly_damaging(0.794) TCGA-13-2061-01 16 48210846 48210846 C T ABCC11 Missense_Mutation p.R1176K 0.17 deleterious(0) probably_damaging(0.948) TCGA-13-2061-01 16 90127875 90127875 G A PRDM7 Missense_Mutation p.S312L 0.79 tolerated(0.76) benign(0) TCGA-13-2061-01 17 15134210 15134210 C T PMP22 3'UTR 0.09 TCGA-13-2061-01 17 3967678 3967678 C G ZZEF1 Missense_Mutation p.K1565N 0.05 deleterious(0) probably_damaging(0.964) TCGA-13-2061-01 17 4463865 4463865 T A GGT6 5'UTR 0.06 TCGA-13-2061-01 17 4717793 4717793 G T PLD2 Missense_Mutation p.W364L 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-13-2061-01 17 59480475 59480475 C T TBX2 Silent p.A239A 0.77 TCGA-13-2061-01 17 62496314 62496341 TCTTTTAAGCAGGCTAGAGTAACCTCTG - DDX5 Frame_Shift_Del p.D515Efs*65 0.82 TCGA-13-2061-01 17 62758716 62758716 C A hsa-mir-6080 RNA 0.29 TCGA-13-2061-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.78 deleterious(0) probably_damaging(1) TCGA-13-2061-01 17 7695310 7695310 T C DNAH2 Missense_Mutation p.C2326R 0.07 possibly_damaging(0.905) TCGA-13-2061-01 18 65178444 65178444 A T DSEL Silent p.P1144P 0.07 TCGA-13-2061-01 19 11597973 11597973 T C ZNF653 Missense_Mutation p.E391G 0.11 tolerated(0.06) benign(0.012) TCGA-13-2061-01 19 12462103 12462103 C A ZNF442 Missense_Mutation p.S99I 0.42 tolerated(0.14) benign(0.012) TCGA-13-2061-01 19 17373395 17373410 GCCTCCAGGGAGGCCT - USHBP1 Frame_Shift_Del p.Q198Pfs*21 0.21 TCGA-13-2061-01 19 1827427 1827427 G C REXO1 Missense_Mutation p.P454R 0.72 tolerated(0.54) benign(0.083) TCGA-13-2061-01 19 30936337 30936337 C G ZNF536 Missense_Mutation p.P623R 0.45 tolerated(0.7) benign(0.19) TCGA-13-2061-01 19 34824688 34824688 T C KIAA0355 Missense_Mutation p.V448A 0.05 tolerated(0.07) probably_damaging(0.932) TCGA-13-2061-01 19 38981324 38981324 A T RYR1 Missense_Mutation p.I2027F 0.03 benign(0.044) TCGA-13-2061-01 19 39292677 39292677 C A LGALS4 Missense_Mutation p.E260D 0.04 tolerated(0.08) benign(0.129) TCGA-13-2061-01 19 40398460 40398460 G C FCGBP Missense_Mutation p.H2169Q 0.23 possibly_damaging(0.683) TCGA-13-2061-01 19 47177981 47177981 C T PRKD2 Silent p.T812T 0.07 TCGA-13-2061-01 19 58083568 58083568 G C ZNF416 Missense_Mutation p.H568Q 0.09 deleterious(0) probably_damaging(0.95) TCGA-13-2061-01 19 6151740 6151740 G C ACSBG2 Missense_Mutation p.G107A 0.09 tolerated(0.11) benign(0.083) TCGA-13-2061-01 19 6712534 6712534 C A C3 Missense_Mutation p.M368I 0.05 tolerated(0.06) benign(0.348) TCGA-13-2061-01 19 8145917 8145917 C T FBN3 Missense_Mutation p.G2475S 0.77 deleterious(0) probably_damaging(1) TCGA-13-2061-01 1 103491156 103491156 T A COL11A1 Missense_Mutation p.D304V 0.15 possibly_damaging(0.773) TCGA-13-2061-01 1 117297439 117297439 C A CD2 Missense_Mutation p.T83K 0.38 tolerated(1) benign(0.012) TCGA-13-2061-01 1 117311264 117311264 G C CD2 Missense_Mutation p.Q305H 0.40 deleterious(0.03) possibly_damaging(0.568) TCGA-13-2061-01 1 160100344 160100344 C A ATP1A2 Missense_Mutation p.A595D 0.40 deleterious(0) possibly_damaging(0.89) TCGA-13-2061-01 1 161496473 161496473 T - HSPA6 3'UTR 0.31 TCGA-13-2061-01 1 161594115 161594115 G - FCGR3B 3'UTR 0.12 TCGA-13-2061-01 1 17330856 17330856 G C ATP13A2 Missense_Mutation p.I176M 0.03 tolerated(0.22) benign(0.031) TCGA-13-2061-01 1 180853243 180853243 C A XPR1 3'UTR 0.33 TCGA-13-2061-01 1 201288986 201288986 A T PKP1 Missense_Mutation p.Q425H 0.07 tolerated_low_confidence(0.15) benign(0.007) TCGA-13-2061-01 1 210415499 210415499 C G SERTAD4 Silent p.P296P 0.38 TCGA-13-2061-01 1 220198487 220198487 T C EPRS Missense_Mutation p.E246G 0.42 tolerated(0.21) possibly_damaging(0.555) TCGA-13-2061-01 1 35480619 35480619 A C ZMYM6 Silent p.T191T 0.02 TCGA-13-2061-01 1 36367577 36367577 C T AGO1 Missense_Mutation p.P390L 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-13-2061-01 1 45101748 45101756 ATGAGAACA - RNF220 In_Frame_Del p.E348_N350del 0.57 TCGA-13-2061-01 1 45120086 45120086 G T TMEM53 3'UTR 0.48 TCGA-13-2061-01 1 64624824 64624824 C T ROR1 Silent p.H445H 0.29 TCGA-13-2061-01 1 67890893 67890893 G A SERBP1 Nonsense_Mutation p.R160* 0.07 TCGA-13-2061-01 1 77763529 77763529 T C AK5 Missense_Mutation p.I199T 0.17 deleterious(0) probably_damaging(0.992) TCGA-13-2061-01 1 78478860 78478860 G - DNAJB4 Frame_Shift_Del p.G113Efs*15 0.36 TCGA-13-2061-01 20 31656717 31656717 A G BPIFB3 Missense_Mutation p.N363D 0.35 tolerated(0.05) benign(0.006) TCGA-13-2061-01 20 3209863 3209863 C T SLC4A11 Silent p.A675A 0.63 TCGA-13-2061-01 20 36560151 36560151 G C VSTM2L Missense_Mutation p.W79S 0.44 deleterious(0.04) possibly_damaging(0.876) TCGA-13-2061-01 20 36758624 36758624 G A TGM2 Silent p.A687A 0.41 TCGA-13-2061-01 20 464579 464579 C A CSNK2A1 3'UTR 0.25 TCGA-13-2061-01 20 47739727 47739727 G A STAU1 Nonsense_Mutation p.R290* 0.03 TCGA-13-2061-01 20 62273470 62273470 C T STMN3 Silent p.L158L 0.27 TCGA-13-2061-01 20 62319070 62319070 C G RTEL1 Missense_Mutation p.I500M 0.25 deleterious(0) probably_damaging(0.976) TCGA-13-2061-01 21 11038921 11038921 A G BAGE2 RNA 0.12 TCGA-13-2061-01 21 30316000 30316000 A G LTN1 Silent p.H1449H 0.79 TCGA-13-2061-01 22 18609613 18609613 G A TUBA8 Missense_Mutation p.E290K 0.32 deleterious_low_confidence(0) benign(0.08) TCGA-13-2061-01 22 39479798 39479798 G C APOBEC3G Missense_Mutation p.R215P 0.57 deleterious(0.01) possibly_damaging(0.79) TCGA-13-2061-01 2 105977707 105977707 G C FHL2 3'UTR 0.06 TCGA-13-2061-01 2 169758040 169758052 TTAAATCTTATAT - G6PC2 Frame_Shift_Del p.L69Gfs*55 0.38 TCGA-13-2061-01 2 169763226 169763226 T C G6PC2 Missense_Mutation p.C165R 0.33 deleterious(0) possibly_damaging(0.719) TCGA-13-2061-01 2 202131492 202131492 A T CASP8 Missense_Mutation p.R154W 0.52 deleterious(0) probably_damaging(0.985) TCGA-13-2061-01 2 211464238 211464238 C T CPS1 Missense_Mutation p.P507L 0.54 deleterious(0) possibly_damaging(0.902) TCGA-13-2061-01 2 216903891 216903891 A G PECR 3'UTR 0.40 TCGA-13-2061-01 2 219225317 219225317 C T C2orf62 Missense_Mutation p.R133W 0.03 deleterious(0) probably_damaging(0.949) TCGA-13-2061-01 2 219602597 219602597 G A TTLL4 Silent p.G66G 0.09 TCGA-13-2061-01 2 234627911 234627911 G A UGT1A4 Missense_Mutation p.V149I 0.44 tolerated(0.23) benign(0.107) TCGA-13-2061-01 2 26332666 26332666 C G RAB10 Missense_Mutation p.T73S 0.53 tolerated(0.06) benign(0.382) TCGA-13-2061-01 2 27729423 27729423 C G GCKR Silent p.T315T 0.29 TCGA-13-2061-01 2 7164528 7164528 G A RNF144A Missense_Mutation p.A180T 0.05 tolerated(0.17) benign(0.097) TCGA-13-2061-01 2 74590286 74590286 A T DCTN1 Missense_Mutation p.S1122T 0.27 tolerated(0.12) benign(0.017) TCGA-13-2061-01 2 85360992 85360992 T A TCF7L1 Missense_Mutation p.L62Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-13-2061-01 3 112710060 112710060 G C GTPBP8 Missense_Mutation p.D72H 0.47 tolerated(0.36) benign(0.005) TCGA-13-2061-01 3 124578105 124578105 G C ITGB5 Silent p.A115A 0.54 TCGA-13-2061-01 3 172224521 172224521 C T TNFSF10 Missense_Mutation p.D203N 0.13 tolerated(1) benign(0.001) TCGA-13-2061-01 3 178742742 178742742 G A ZMAT3 3'UTR 0.06 TCGA-13-2061-01 3 196388482 196388482 C G NRROS Missense_Mutation p.I656M 0.13 tolerated(0.05) possibly_damaging(0.472) TCGA-13-2061-01 3 52456307 52456307 C A PHF7 Silent p.A250A 0.67 TCGA-13-2061-01 4 515720 515720 C A PIGG Missense_Mutation p.T535N 0.13 tolerated(0.33) benign(0.001) TCGA-13-2061-01 5 137089758 137089758 C A HNRNPA0 5'UTR 0.47 TCGA-13-2061-01 5 169129351 169129351 T G DOCK2 Missense_Mutation p.F435V 0.19 deleterious(0) probably_damaging(0.95) TCGA-13-2061-01 5 177031200 177031200 G C B4GALT7 Missense_Mutation p.G24A 0.40 tolerated_low_confidence(0.49) benign(0.002) TCGA-13-2061-01 5 43280417 43280425 CCGACTCAT - NIM1K In_Frame_Del p.L301_R303del 0.33 TCGA-13-2061-01 5 43547967 43547967 C G PAIP1 Missense_Mutation p.V162L 0.08 tolerated(0.1) probably_damaging(0.997) TCGA-13-2061-01 5 56233470 56233470 G C MIER3 Missense_Mutation p.A124G 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-13-2061-01 5 66492520 66492520 T A CD180 5'UTR 0.42 TCGA-13-2061-01 6 131915365 131915365 C T MED23 Missense_Mutation p.D1036N 0.05 deleterious(0.02) probably_damaging(0.997) TCGA-13-2061-01 6 13601090 13601090 C G SIRT5 Missense_Mutation p.P256A 0.24 deleterious(0) probably_damaging(0.999) TCGA-13-2061-01 6 152671404 152671404 C A SYNE1 Missense_Mutation p.V3934F 0.78 possibly_damaging(0.794) TCGA-13-2061-01 6 24145907 24145907 G A NRSN1 Silent p.Q107Q 0.25 TCGA-13-2061-01 6 26273441 26273441 C T HIST1H2BI Missense_Mutation p.R80C 0.64 tolerated_low_confidence(0.1) benign(0.036) TCGA-13-2061-01 6 29408523 29408523 T A OR10C1 Missense_Mutation p.L244Q 0.26 deleterious(0) probably_damaging(0.995) TCGA-13-2061-01 6 43483701 43483701 C A YIPF3 Missense_Mutation p.A72S 0.28 tolerated(0.72) benign(0.022) TCGA-13-2061-01 6 47202606 47202606 A T TNFRSF21 Missense_Mutation p.M513K 0.05 deleterious(0.01) benign(0.005) TCGA-13-2061-01 6 51612779 51612779 A G PKHD1 Missense_Mutation p.F3212S 0.04 deleterious(0) probably_damaging(0.999) TCGA-13-2061-01 6 79607886 79607886 A G IRAK1BP1 Silent p.E206E 0.03 TCGA-13-2061-01 6 90383967 90383967 G C MDN1 Missense_Mutation p.P4368R 0.27 probably_damaging(0.996) TCGA-13-2061-01 6 99283537 99283537 A G POU3F2 Missense_Mutation p.D263G 0.34 deleterious(0) probably_damaging(1) TCGA-13-2061-01 7 107577656 107577656 G C LAMB1 Silent p.S1276S 0.03 TCGA-13-2061-01 7 134880911 134880911 G C WDR91 Missense_Mutation p.S410C 0.05 deleterious(0.01) probably_damaging(0.98) TCGA-13-2061-01 7 150034650 150034650 G A LRRC61 Missense_Mutation p.D234N 0.53 tolerated(0.63) benign(0.319) TCGA-13-2061-01 7 151945179 151945179 A G KMT2C Silent p.D780D 0.04 TCGA-13-2061-01 7 33427746 33427746 C A BBS9 Missense_Mutation p.T702N 0.79 deleterious(0) probably_damaging(0.97) TCGA-13-2061-01 7 50605620 50605620 T A DDC Missense_Mutation p.M125L 0.38 tolerated(0.24) probably_damaging(0.998) TCGA-13-2061-01 7 72361215 72361215 G C POM121 5'UTR 0.03 TCGA-13-2061-01 7 99817608 99817608 C A PVRIG Silent p.T25T 0.37 TCGA-13-2061-01 8 133492497 133492497 G C KCNQ3 Missense_Mutation p.R95G 0.06 tolerated(0.06) benign(0.069) TCGA-13-2061-01 8 141461133 141461133 G T TRAPPC9 Silent p.R212R 0.27 TCGA-13-2061-01 8 143995718 143995718 C A CYP11B2 Missense_Mutation p.A306S 0.46 deleterious(0.02) possibly_damaging(0.817) TCGA-13-2061-01 8 42828461 42828475 AGAATCAAAGAAAGC - HOOK3 In_Frame_Del p.E385_A389del 0.22 TCGA-13-2061-01 8 91013759 91013759 C T DECR1 Silent p.S13S 0.27 TCGA-13-2061-01 9 12694227 12694227 T C TYRP1 Silent p.P77P 0.65 TCGA-13-2061-01 9 133963009 133963009 G T LAMC3 Silent p.R1459R 0.73 TCGA-13-2061-01 9 33998843 33998843 C G UBAP2 Missense_Mutation p.R40P 0.76 deleterious(0) probably_damaging(0.998) TCGA-13-2061-01 X 107930859 107930859 A C COL4A5 Missense_Mutation p.Q1488P 0.10 benign(0.078) TCGA-13-2061-01 X 44703898 44703898 G C DUSP21 Missense_Mutation p.G174R 0.67 deleterious(0) probably_damaging(0.981) TCGA-13-2061-01 X 67937450 67937450 A T STARD8 Missense_Mutation p.S232C 0.73 tolerated(0.07) benign(0.006) TCGA-13-2065-01 10 115896971 115896971 A G C10orf118 Missense_Mutation p.C434R 0.28 deleterious(0) probably_damaging(0.998) TCGA-13-2065-01 10 55849749 55849749 T A PCDH15 Silent p.S664S 0.59 TCGA-13-2065-01 10 5948407 5948407 C G FBXO18 Missense_Mutation p.P240A 0.10 tolerated(0.42) benign(0.061) TCGA-13-2065-01 11 104819342 104819342 C T CASP4 Silent p.Q281Q 0.47 TCGA-13-2065-01 12 120195206 120195206 C T CIT Missense_Mutation p.R892Q 0.39 tolerated(0.07) probably_damaging(0.996) TCGA-13-2065-01 12 81101735 81101735 C T MYF6 Silent p.I79I 0.37 TCGA-13-2065-01 15 20588473 20588473 T A HERC2P3 RNA 0.38 TCGA-13-2065-01 15 99796123 99796123 G T LRRC28 5'UTR 0.83 TCGA-13-2065-01 16 3294554 3294554 T C MEFV Missense_Mutation p.T549A 0.35 tolerated(0.09) benign(0.027) TCGA-13-2065-01 16 343716 343716 G C AXIN1 Missense_Mutation p.S653C 0.28 deleterious(0.02) possibly_damaging(0.765) TCGA-13-2065-01 16 4414870 4414870 C G CORO7 Missense_Mutation p.R317P 0.35 deleterious(0) probably_damaging(1) TCGA-13-2065-01 16 72822428 72822428 C A ZFHX3 Silent p.G3249G 0.51 TCGA-13-2065-01 17 10363542 10363542 G T MYH4 Missense_Mutation p.T415N 0.70 deleterious(0) probably_damaging(0.999) TCGA-13-2065-01 17 38955772 38955772 T C KRT28 Missense_Mutation p.Y125C 0.73 tolerated(0.12) benign(0.049) TCGA-13-2065-01 17 7579321 7579322 CA - TP53 Frame_Shift_Del p.V122Dfs*26 0.80 TCGA-13-2065-01 17 78265425 78265425 A G RNF213 Splice_Site p.X424_splice 0.82 TCGA-13-2065-01 17 80194035 80194035 C G SLC16A3 Missense_Mutation p.Q51E 0.25 tolerated(1) benign(0.027) TCGA-13-2065-01 18 29497612 29497613 TC A TRAPPC8 Frame_Shift_Del p.E124Cfs*19 0.34 TCGA-13-2065-01 18 44555156 44555156 C T TCEB3C Missense_Mutation p.G353D 0.03 tolerated(0.18) benign(0.142) TCGA-13-2065-01 19 11943370 11943370 G A ZNF440 Missense_Mutation p.C460Y 0.39 deleterious(0.01) probably_damaging(0.993) TCGA-13-2065-01 19 17435753 17435753 G T ANO8 Missense_Mutation p.T1035N 0.25 tolerated_low_confidence(0.33) unknown(0) TCGA-13-2065-01 19 41081446 41081446 G T SPTBN4 Missense_Mutation p.D2556Y 0.38 deleterious(0.01) possibly_damaging(0.861) TCGA-13-2065-01 19 746346 746346 G A PALM Silent p.V232V 0.31 TCGA-13-2065-01 1 1225674 1225674 G A SCNN1D Silent p.Q562Q 0.40 TCGA-13-2065-01 1 149895559 149895559 C G SF3B4 Missense_Mutation p.G384R 0.51 deleterious_low_confidence(0.01) unknown(0) TCGA-13-2065-01 1 152280834 152280834 C T FLG Silent p.R2176R 0.14 TCGA-13-2065-01 1 153409673 153409673 G C S100A7L2 Missense_Mutation p.S67C 0.52 tolerated(0.22) probably_damaging(0.938) TCGA-13-2065-01 1 16959836 16959836 G A CROCCP2 RNA 0.34 TCGA-13-2065-01 1 180240367 180240367 C T LHX4 Intron 0.07 TCGA-13-2065-01 1 203054645 203054645 G A MYOG Missense_Mutation p.R149W 0.05 tolerated(0.08) benign(0.032) TCGA-13-2065-01 1 209933381 209933381 C T TRAF3IP3 5'UTR 0.75 TCGA-13-2065-01 1 223286034 223286034 C A TLR5 Missense_Mutation p.A114S 0.16 deleterious(0.04) possibly_damaging(0.863) TCGA-13-2065-01 1 2444334 2444334 C T PANK4 Missense_Mutation p.V574M 0.76 deleterious(0.01) possibly_damaging(0.875) TCGA-13-2065-01 1 57351812 57351812 G C C8A Silent p.V356V 0.34 TCGA-13-2065-01 1 62739570 62739570 G A KANK4 Silent p.N402N 0.36 TCGA-13-2065-01 1 76378613 76378613 C A MSH4 3'UTR 0.57 TCGA-13-2065-01 20 42143412 42143412 G A L3MBTL1 Silent p.Q144Q 0.63 TCGA-13-2065-01 20 742441 742441 G A SLC52A3 Silent p.S367S 0.38 TCGA-13-2065-01 21 34113812 34113812 T G PAXBP1 Intron 0.23 TCGA-13-2065-01 22 38245380 38245380 C A EIF3L 5'UTR 0.26 TCGA-13-2065-01 2 107075744 107075744 A G RGPD3 Silent p.A39A 0.28 TCGA-13-2065-01 2 130796708 130796708 G A KLF2P1 3'Flank 0.26 TCGA-13-2065-01 2 233323797 233323797 G A ALPI Missense_Mutation p.A510T 0.26 tolerated(0.63) benign(0) TCGA-13-2065-01 2 27322160 27322160 G A KHK Intron 0.42 TCGA-13-2065-01 2 46608769 46608769 G A EPAS1 Missense_Mutation p.V694M 0.26 tolerated(0.14) benign(0.003) TCGA-13-2065-01 3 112066608 112066608 G A CD200 Missense_Mutation p.G234R 0.18 deleterious(0.01) probably_damaging(0.965) TCGA-13-2065-01 3 145912201 145912201 T C PLSCR4 Silent p.R329R 0.16 TCGA-13-2065-01 3 150128592 150128592 G C TSC22D2 Missense_Mutation p.Q485H 0.61 deleterious(0) benign(0.216) TCGA-13-2065-01 3 9416212 9416212 A T THUMPD3 Missense_Mutation p.I274F 0.73 deleterious(0) probably_damaging(0.965) TCGA-13-2065-01 4 169432917 169432917 G A PALLD Missense_Mutation p.E88K 0.28 tolerated(0.31) benign(0.001) TCGA-13-2065-01 4 47679958 47679958 C G CORIN Missense_Mutation p.V416L 0.25 tolerated(0.29) benign(0.008) TCGA-13-2065-01 5 101755572 101755572 C G SLCO6A1 Missense_Mutation p.C477S 0.28 deleterious(0) probably_damaging(1) TCGA-13-2065-01 6 126333934 126333934 G T TRMT11 Nonsense_Mutation p.E315* 0.22 TCGA-13-2065-01 6 160176654 160176654 G A WTAP 3'UTR 0.34 TCGA-13-2065-01 6 32188188 32188188 G C NOTCH4 Missense_Mutation p.R385G 0.27 tolerated(0.08) possibly_damaging(0.651) TCGA-13-2065-01 6 35479548 35479548 G C TULP1 Missense_Mutation p.P76A 0.58 tolerated_low_confidence(0.5) benign(0) TCGA-13-2065-01 6 76657060 76657085 ATTTCCAGATGGAGTTGTTGGGCTGC - IMPG1 Frame_Shift_Del p.A664Rfs*8 0.18 TCGA-13-2065-01 6 99797000 99797000 G C FAXC Missense_Mutation p.H83Q 0.37 tolerated(0.06) probably_damaging(0.943) TCGA-13-2065-01 7 128846006 128846006 G T SMO Silent p.L312L 0.28 TCGA-13-2065-01 7 23794028 23794028 G T STK31 Nonsense_Mutation p.G410* 0.20 TCGA-13-2065-01 7 88965253 88965253 C G ZNF804B Missense_Mutation p.A986G 0.41 tolerated(0.27) benign(0.025) TCGA-13-2065-01 9 136640099 136640099 C A VAV2 Missense_Mutation p.R698M 0.69 deleterious(0) probably_damaging(1) TCGA-13-2065-01 9 37006474 37006474 G C PAX5 Missense_Mutation p.S157R 0.37 deleterious(0.01) possibly_damaging(0.86) TCGA-13-2065-01 X 107097870 107097870 T A MID2 Missense_Mutation p.V251D 0.51 deleterious(0) probably_damaging(0.949) TCGA-13-2065-01 X 118723534 118723534 G T NKRF Missense_Mutation p.S633R 0.32 tolerated(1) benign(0.016) TCGA-13-2065-01 X 12938969 12938969 A T TLR8 Missense_Mutation p.N604Y 0.45 deleterious(0.03) benign(0.003) TCGA-13-2065-01 X 129822875 129822875 A G ENOX2 Missense_Mutation p.I101T 0.33 deleterious(0) probably_damaging(0.996) TCGA-13-2065-01 X 47433449 47433449 G A SYN1 Missense_Mutation p.P645L 0.53 deleterious(0.02) benign(0.102) TCGA-13-2065-01 X 65242678 65242678 C T VSIG4 Intron 0.24 TCGA-13-2065-01 X 67943669 67943669 G A STARD8 Missense_Mutation p.D1001N 0.52 deleterious(0.01) possibly_damaging(0.549) TCGA-13-2071-01 10 47087575 47087575 T C NPY4R Silent p.N264N 0.22 TCGA-13-2071-01 11 117698792 117698792 C G FXYD2 5'Flank 0.65 TCGA-13-2071-01 11 119996492 119996492 C T TRIM29 Missense_Mutation p.D414N 0.04 tolerated(0.05) possibly_damaging(0.52) TCGA-13-2071-01 11 45987013 45987013 G C PHF21A Missense_Mutation p.H282Q 0.34 tolerated(0.1) probably_damaging(0.997) TCGA-13-2071-01 12 13768457 13768457 G T GRIN2B Silent p.I490I 0.50 TCGA-13-2071-01 12 53587133 53587133 C T ITGB7 Missense_Mutation p.R506H 0.59 tolerated(0.41) benign(0.004) TCGA-13-2071-01 12 95927012 95927012 C G USP44 Missense_Mutation p.D341H 0.05 deleterious(0.05) benign(0.003) TCGA-13-2071-01 13 20221098 20221098 T - MPHOSPH8 Frame_Shift_Del p.S295Rfs*20 0.20 TCGA-13-2071-01 13 25823461 25823461 T A MTMR6 Missense_Mutation p.D592V 0.47 deleterious_low_confidence(0.02) possibly_damaging(0.793) TCGA-13-2071-01 13 25823558 25823558 C A MTMR6 Nonsense_Mutation p.E560* 0.24 TCGA-13-2071-01 14 23420854 23420854 C T HAUS4 Missense_Mutation p.M125I 0.40 tolerated(0.14) benign(0) TCGA-13-2071-01 15 45725198 45725198 A T C15orf48 Missense_Mutation p.Q79L 0.05 deleterious(0) benign(0.079) TCGA-13-2071-01 15 51773448 51773448 C T DMXL2 Nonsense_Mutation p.W1952* 0.23 TCGA-13-2071-01 15 52414779 52414779 T C GNB5 3'UTR 0.05 TCGA-13-2071-01 15 72500969 72500969 C T PKM Missense_Mutation p.V277I 0.07 tolerated(0.07) benign(0.039) TCGA-13-2071-01 15 79254512 79254512 G A RASGRF1 Nonsense_Mutation p.R1266* 0.39 TCGA-13-2071-01 15 84539699 84539699 T C ADAMTSL3 Silent p.D316D 0.31 TCGA-13-2071-01 15 89694983 89694983 G A ABHD2 Silent p.R90R 0.33 TCGA-13-2071-01 15 93467709 93467709 A G CHD2 Missense_Mutation p.K74R 0.34 tolerated(0.26) unknown(0) TCGA-13-2071-01 16 1735505 1735505 C G HN1L Missense_Mutation p.S37C 0.07 tolerated(0.07) probably_damaging(0.927) TCGA-13-2071-01 16 71663384 71663384 G C MARVELD3 Missense_Mutation p.L194F 0.05 deleterious(0.01) possibly_damaging(0.636) TCGA-13-2071-01 16 71663486 71663486 A T MARVELD3 Intron 0.35 TCGA-13-2071-01 17 18233878 18233878 T A SHMT1 Missense_Mutation p.T388S 0.54 tolerated(0.24) probably_damaging(1) TCGA-13-2071-01 17 5086195 5086195 C T ZNF594 Missense_Mutation p.V453I 0.63 tolerated(1) benign(0.008) TCGA-13-2071-01 17 61787924 61787924 G A STRADA Silent p.L170L 0.06 TCGA-13-2071-01 17 73754580 73754580 G A GALK1 Silent p.G298G 0.19 TCGA-13-2071-01 17 7578462 7578467 GCGGGT - TP53 In_Frame_Del p.T155_R156del 0.60 TCGA-13-2071-01 19 10935805 10935805 A G DNM2 Missense_Mutation p.I656V 0.21 deleterious(0.03) benign(0.437) TCGA-13-2071-01 19 22784358 22784358 C T AC011467.1 5'Flank 0.38 TCGA-13-2071-01 19 33696983 33696983 G A LRP3 Missense_Mutation p.R436H 0.14 deleterious(0.05) probably_damaging(0.991) TCGA-13-2071-01 19 45899641 45899641 C A PPP1R13L Missense_Mutation p.D256Y 0.37 deleterious(0) probably_damaging(0.962) TCGA-13-2071-01 19 49259694 49259694 G A FGF21 Silent p.G67G 0.50 TCGA-13-2071-01 19 58858244 58858244 T C A1BG 3'UTR 0.48 TCGA-13-2071-01 1 144930928 144930928 T A PDE4DIP Intron 0.19 TCGA-13-2071-01 1 151288595 151288595 C G PI4KB Missense_Mutation p.Q133H 0.31 tolerated(0.11) benign(0.319) TCGA-13-2071-01 1 17410239 17410239 T A PADI2 Silent p.R344R 0.18 TCGA-13-2071-01 1 207198264 207198264 C T C1orf116 Missense_Mutation p.R84Q 0.32 tolerated(0.21) benign(0.01) TCGA-13-2071-01 1 43825411 43825433 TGGGCTTTGAACCTGAACGGTTT - CDC20 Frame_Shift_Del p.W116* 0.37 TCGA-13-2071-01 1 66067629 66067629 A T LEPR Missense_Mutation p.Q463H 0.37 deleterious(0.02) benign(0.078) TCGA-13-2071-01 1 7913460 7913460 C T UTS2 Missense_Mutation p.C11Y 0.18 tolerated_low_confidence(0.17) benign(0.003) TCGA-13-2071-01 20 29624075 29624075 C G FRG1B Silent p.V33V 0.17 TCGA-13-2071-01 20 58644939 58644939 G - C20orf197 5'UTR 0.25 TCGA-13-2071-01 2 10925098 10925098 T C PDIA6 Missense_Mutation p.I406V 0.47 tolerated(0.27) benign(0.05) TCGA-13-2071-01 2 70142504 70142504 G A MXD1 Silent p.E14E 0.34 TCGA-13-2071-01 3 11356928 11356928 T G ATG7 Silent p.L213L 0.08 TCGA-13-2071-01 3 124527907 124527907 C A ITGB5 Missense_Mutation p.G409C 0.25 deleterious(0) probably_damaging(0.993) TCGA-13-2071-01 3 12625996 12625996 G T RAF1 3'UTR 0.26 TCGA-13-2071-01 3 131181679 131181679 T C MRPL3 Missense_Mutation p.K312R 0.23 tolerated(0.19) benign(0.013) TCGA-13-2071-01 3 156710928 156710928 T G RP11-6F2.3 5'Flank 0.06 TCGA-13-2071-01 3 171362744 171362744 G T PLD1 Silent p.T833T 0.24 TCGA-13-2071-01 3 184081350 184081350 C T POLR2H Nonsense_Mutation p.R24* 0.20 TCGA-13-2071-01 3 25622184 25622184 C T RARB Silent p.L253L 0.32 TCGA-13-2071-01 3 44968337 44968337 T A ZDHHC3 Silent p.G276G 0.38 TCGA-13-2071-01 4 186180115 186180115 C G SNX25 Missense_Mutation p.L46V 0.08 tolerated(0.32) benign(0.044) TCGA-13-2071-01 4 55972056 55972056 A T KDR Missense_Mutation p.C530S 0.52 deleterious(0) probably_damaging(1) TCGA-13-2071-01 5 140175375 140175375 G A PCDHA2 Missense_Mutation p.E276K 0.66 tolerated_low_confidence(0.07) benign(0.05) TCGA-13-2071-01 5 140306756 140306756 C T PCDHAC1 Silent p.C93C 0.35 TCGA-13-2071-01 6 169053859 169053859 C G SMOC2 Missense_Mutation p.C423W 0.08 deleterious(0) probably_damaging(1) TCGA-13-2071-01 6 31691713 31691713 T C C6orf25 Missense_Mutation p.L120P 0.32 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-13-2071-01 6 6318767 6318767 C T F13A1 Splice_Site p.X44_splice 0.03 TCGA-13-2071-01 7 126883026 126883026 G A GRM8 Missense_Mutation p.A78V 0.07 deleterious(0) probably_damaging(0.994) TCGA-13-2071-01 7 142640665 142640665 C A KEL Missense_Mutation p.W537C 0.23 deleterious(0) probably_damaging(0.993) TCGA-13-2071-01 7 19765386 19765412 GATCATCTGATAAGAAAAAGAAAGGCA - TMEM196 Splice_Site p.X69_splice 0.28 TCGA-13-2071-01 7 23286477 23286477 A C GPNMB Translation_Start_Site p.M1? 0.09 deleterious(0.04) possibly_damaging(0.813) TCGA-13-2071-01 7 98643376 98643376 G A SMURF1 Missense_Mutation p.R427W 0.39 deleterious(0) probably_damaging(0.999) TCGA-13-2071-01 8 143994750 143994750 C G CYP11B2 Missense_Mutation p.A358P 0.63 deleterious(0.01) probably_damaging(0.989) TCGA-13-2071-01 8 1649524 1649524 C T DLGAP2 Silent p.R960R 0.45 TCGA-13-2071-01 8 30209758 30209758 G A TUBBP1 RNA 0.12 TCGA-13-2071-01 8 30702009 30702009 T G TEX15 Missense_Mutation p.T1509P 0.51 deleterious(0.01) benign(0.187) TCGA-13-2071-01 8 39606878 39606878 A G ADAM2 Missense_Mutation p.I656T 0.36 deleterious(0.03) benign(0.013) TCGA-13-2071-01 9 131671021 131671021 C G LRRC8A Missense_Mutation p.N526K 0.36 tolerated(0.29) probably_damaging(0.979) TCGA-13-2071-01 9 137582924 137582924 T G COL5A1 Silent p.P92P 0.26 TCGA-13-2071-01 X 109696863 109696863 A C RGAG1 Silent p.T1006T 0.48 TCGA-13-2071-01 X 112022393 112022393 C A AMOT Missense_Mutation p.A997S 0.49 unknown(0) TCGA-13-2071-01 X 138669904 138669904 C A MCF2 Missense_Mutation p.K907N 0.11 tolerated(0.34) benign(0.084) TCGA-13-2071-01 X 154158085 154158085 G A F8 Missense_Mutation p.T1327M 0.15 deleterious(0.04) benign(0.34) TCGA-13-2071-01 X 40988342 40988342 T A USP9X Missense_Mutation p.D62E 0.18 tolerated(0.54) benign(0.001) TCGA-13-2071-01 X 69647010 69647010 G T GDPD2 Missense_Mutation p.M242I 0.29 deleterious(0) probably_damaging(1) TCGA-13-2071-01 X 70836959 70836959 A T CXCR3 Silent p.S168S 0.12 TCGA-13-A5FT-01 10 15290725 15290725 G C FAM171A1 Missense_Mutation p.P223A 0.20 deleterious(0.03) probably_damaging(0.972) TCGA-13-A5FT-01 10 17130275 17130275 G A CUBN Missense_Mutation p.P612L 0.27 tolerated(0.1) benign(0.17) TCGA-13-A5FT-01 10 24832028 24832028 G A KIAA1217 Missense_Mutation p.E1277K 0.20 tolerated(0.07) possibly_damaging(0.547) TCGA-13-A5FT-01 10 55582143 55582143 G A PCDH15 Silent p.P1783P 0.41 TCGA-13-A5FT-01 10 75910711 75910711 T C AP3M1 5'UTR 0.41 TCGA-13-A5FT-01 10 94393542 94393542 A G KIF11 Missense_Mutation p.Q622R 0.47 tolerated(0.5) benign(0.296) TCGA-13-A5FT-01 11 55111599 55111599 G T OR4A16 Missense_Mutation p.R308I 0.41 tolerated_low_confidence(0.1) benign(0.022) TCGA-13-A5FT-01 11 56000298 56000298 C G OR5T2 Missense_Mutation p.V122L 0.38 tolerated(0.1) benign(0.021) TCGA-13-A5FT-01 11 57099903 57099903 G C SSRP1 Missense_Mutation p.L276V 0.36 deleterious(0.04) benign(0.314) TCGA-13-A5FT-01 11 65714794 65714794 G A TSGA10IP RNA 0.53 TCGA-13-A5FT-01 11 76731618 76731619 TG - ACER3 3'UTR 0.30 TCGA-13-A5FT-01 11 93456446 93456446 G T KIAA1731 Missense_Mutation p.D2063Y 0.43 deleterious(0) possibly_damaging(0.861) TCGA-13-A5FT-01 11 93463585 93463585 G C KIAA1731 3'Flank 0.51 TCGA-13-A5FT-01 12 123187519 123187519 G C HCAR2 Silent p.L104L 0.56 TCGA-13-A5FT-01 12 12870852 12870870 TCGGCCTGCAGGAACCTCT - CDKN1B Frame_Shift_Del p.C29Rfs*7 0.37 TCGA-13-A5FT-01 12 18892094 18892094 A G CAPZA3 Missense_Mutation p.I298V 0.38 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-13-A5FT-01 12 20854393 20854393 G C SLCO1C1 Missense_Mutation p.G91R 0.10 deleterious(0) probably_damaging(0.999) TCGA-13-A5FT-01 12 32884397 32884397 T G DNM1L Missense_Mutation p.H436Q 0.31 deleterious(0) possibly_damaging(0.771) TCGA-13-A5FT-01 12 40964429 40964429 C T MUC19 3'UTR 0.13 TCGA-13-A5FT-01 12 62790083 62790083 A G USP15 Missense_Mutation p.D860G 0.35 deleterious(0.03) probably_damaging(0.959) TCGA-13-A5FT-01 12 81112730 81112730 C A MYF5 Missense_Mutation p.P223H 0.40 deleterious(0) benign(0.236) TCGA-13-A5FT-01 12 8352420 8352420 G C FAM66C RNA 0.35 TCGA-13-A5FT-01 13 29001382 29001382 T A FLT1 Missense_Mutation p.Q450H 0.59 deleterious(0.04) probably_damaging(0.999) TCGA-13-A5FT-01 14 22521166 22521166 C G TRAV21 Missense_Mutation p.L63V 0.39 tolerated(0.19) probably_damaging(0.98) TCGA-13-A5FT-01 14 23588069 23588069 G A CEBPE Missense_Mutation p.P78S 0.42 tolerated(0.25) benign(0.362) TCGA-13-A5FT-01 14 51387306 51387306 G C PYGL Missense_Mutation p.R270G 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-13-A5FT-01 14 59655427 59655441 ACCGGATCCCATTGT - DAAM1 5'UTR 0.23 TCGA-13-A5FT-01 15 28273115 28273115 C T OCA2 Silent p.L139L 0.26 TCGA-13-A5FT-01 15 64463563 64463568 CCAAGG - CSNK1G1 3'UTR 0.44 TCGA-13-A5FT-01 16 12293457 12293457 G T SNX29 Splice_Site p.X532_splice 0.24 TCGA-13-A5FT-01 16 14958483 14958483 G A NOMO1 Silent p.L479L 0.34 TCGA-13-A5FT-01 16 80638236 80638236 C T CDYL2 3'UTR 0.73 TCGA-13-A5FT-01 16 83065793 83065793 C T CDH13 Silent p.V159V 0.64 TCGA-13-A5FT-01 17 48629007 48629007 G C SPATA20 Missense_Mutation p.C571S 0.89 deleterious(0.04) possibly_damaging(0.493) TCGA-13-A5FT-01 17 56051188 56051188 T C VEZF1 3'UTR 0.79 TCGA-13-A5FT-01 17 58235743 58235743 C T CA4 Missense_Mutation p.P227L 0.18 deleterious(0) probably_damaging(1) TCGA-13-A5FT-01 17 60526814 60526814 G C METTL2A 3'UTR 0.83 TCGA-13-A5FT-01 17 61909749 61909749 A - SMARCD2 3'UTR 0.09 TCGA-13-A5FT-01 17 7417127 7417127 C G POLR2A Silent p.P1848P 0.75 TCGA-13-A5FT-01 17 74731937 74731937 T C SRSF2 3'UTR 0.78 TCGA-13-A5FT-01 17 74731939 74731939 A T SRSF2 3'UTR 0.77 TCGA-13-A5FT-01 17 7578500 7578500 G AA TP53 Frame_Shift_Ins p.Q144Lfs*5 0.52 TCGA-13-A5FT-01 18 18530649 18530649 C G ROCK1 3'UTR 0.56 TCGA-13-A5FT-01 18 18530650 18530650 A T ROCK1 3'UTR 0.53 TCGA-13-A5FT-01 19 1003280 1003280 G T GRIN3B Missense_Mutation p.S193I 1.00 tolerated(0.16) benign(0.211) TCGA-13-A5FT-01 19 1008741 1008741 G A GRIN3B Missense_Mutation p.R864H 0.76 deleterious(0) probably_damaging(0.991) TCGA-13-A5FT-01 19 18474261 18474261 C T PGPEP1 Silent p.F166F 0.34 TCGA-13-A5FT-01 19 35863309 35863309 C T GPR42 3'UTR 0.17 TCGA-13-A5FT-01 19 40023451 40023451 C T EID2B 5'UTR 0.37 TCGA-13-A5FT-01 19 40885586 40885586 G T HIPK4 Silent p.R587R 0.22 TCGA-13-A5FT-01 19 54755026 54755026 G T LILRB5 Intron 0.18 TCGA-13-A5FT-01 19 55147951 55147951 C A LILRB1 Missense_Mutation p.P554T 0.32 tolerated(0.16) benign(0.01) TCGA-13-A5FT-01 19 56001764 56001764 C G SSC5D Missense_Mutation p.A192G 0.38 benign(0.021) TCGA-13-A5FT-01 19 57060324 57060324 C G ZFP28 Intron 0.34 TCGA-13-A5FT-01 1 113265763 113265763 C G FAM19A3 Missense_Mutation p.R81G 0.29 deleterious(0) possibly_damaging(0.619) TCGA-13-A5FT-01 1 16892163 16892163 T A NBPF1 Missense_Mutation p.E1010V 0.08 deleterious(0) possibly_damaging(0.625) TCGA-13-A5FT-01 1 17418967 17418967 T C PADI2 Silent p.G197G 0.12 TCGA-13-A5FT-01 1 17418968 17418968 C A PADI2 Missense_Mutation p.G197V 0.13 deleterious(0.03) probably_damaging(0.956) TCGA-13-A5FT-01 1 185932951 185932951 A T HMCN1 Missense_Mutation p.K674N 0.37 probably_damaging(0.994) TCGA-13-A5FT-01 1 214788182 214788182 A T CENPF Missense_Mutation p.N57I 0.31 benign(0.394) TCGA-13-A5FT-01 1 214815049 214815049 G A CENPF Missense_Mutation p.S1123N 0.40 benign(0.003) TCGA-13-A5FT-01 1 23720468 23720468 G C TCEA3 Silent p.R241R 0.76 TCGA-13-A5FT-01 1 237868640 237868640 G A RYR2 Missense_Mutation p.A3193T 0.35 benign(0.058) TCGA-13-A5FT-01 1 241934991 241934991 A T WDR64 Missense_Mutation p.E751V 0.38 deleterious(0.02) benign(0.145) TCGA-13-A5FT-01 1 39852876 39852876 C G MACF1 Missense_Mutation p.L2726V 0.25 probably_damaging(0.999) TCGA-13-A5FT-01 1 44435692 44435692 A G DPH2 5'UTR 0.13 TCGA-13-A5FT-01 1 45805919 45805919 G C MUTYH Missense_Mutation p.P3R 0.13 tolerated_low_confidence(0.07) benign(0.123) TCGA-13-A5FT-01 1 46751514 46751514 T G LRRC41 Missense_Mutation p.K339Q 0.35 tolerated(0.37) possibly_damaging(0.607) TCGA-13-A5FT-01 1 52882556 52882556 G C PRPF38A 3'UTR 0.22 TCGA-13-A5FT-01 1 71872988 71872988 G A NEGR1 3'UTR 0.39 TCGA-13-A5FT-01 1 76384617 76384617 A C ASB17 3'UTR 0.28 TCGA-13-A5FT-01 1 76387886 76387886 A G ASB17 Missense_Mutation p.L187P 0.31 deleterious(0.02) benign(0.144) TCGA-13-A5FT-01 1 84701472 84701472 C G PRKACB 3'UTR 0.31 TCGA-13-A5FT-01 21 33684377 33684377 G A MRAP 3'UTR 0.39 TCGA-13-A5FT-01 21 45950988 45950988 G T TSPEAR Missense_Mutation p.L191M 0.54 tolerated(0.06) possibly_damaging(0.729) TCGA-13-A5FT-01 22 32480560 32480560 C T SLC5A1 Nonsense_Mutation p.R267* 0.73 TCGA-13-A5FT-01 2 114258273 114258273 C T FOXD4L1 3'UTR 0.28 TCGA-13-A5FT-01 2 114335680 114335680 G T FAM138B RNA 0.35 TCGA-13-A5FT-01 2 131520225 131520225 G - AMER3 Frame_Shift_Del p.R196Gfs*70 0.41 TCGA-13-A5FT-01 2 15378783 15378783 T A NBAS Missense_Mutation p.T1918S 0.42 tolerated(0.07) benign(0.135) TCGA-13-A5FT-01 2 162865098 162865098 G A DPP4 Missense_Mutation p.A654V 0.44 deleterious(0) probably_damaging(0.995) TCGA-13-A5FT-01 2 163200719 163200719 C G GCA 5'UTR 0.39 TCGA-13-A5FT-01 2 166767852 166767852 G C TTC21B Missense_Mutation p.L816V 0.26 tolerated(0.06) possibly_damaging(0.901) TCGA-13-A5FT-01 2 179419677 179419677 G A TTN Silent p.A29503A 0.07 TCGA-13-A5FT-01 2 220136110 220136110 T G TUBA4B RNA 0.43 TCGA-13-A5FT-01 2 32445423 32445423 T C SLC30A6 Missense_Mutation p.S383P 0.36 deleterious(0) probably_damaging(0.956) TCGA-13-A5FT-01 2 42285375 42285375 C T PKDCC 3'UTR 0.22 TCGA-13-A5FT-01 2 54028558 54028558 C T ERLEC1 Nonsense_Mutation p.Q184* 0.51 TCGA-13-A5FT-01 2 80831252 80831252 T G CTNNA2 Missense_Mutation p.I748S 0.39 deleterious(0) probably_damaging(0.986) TCGA-13-A5FT-01 3 101482001 101482001 C G CEP97 Intron 0.45 TCGA-13-A5FT-01 3 122144798 122144798 C G KPNA1 3'UTR 0.47 TCGA-13-A5FT-01 3 125786807 125786807 G A SLC41A3 Missense_Mutation p.L86F 0.40 deleterious(0.03) benign(0.049) TCGA-13-A5FT-01 3 151082931 151082932 AT TTGTCTG MED12L Frame_Shift_Ins p.N1006Ifs*13 0.28 TCGA-13-A5FT-01 3 183524308 183524308 A G YEATS2 Intron 0.57 TCGA-13-A5FT-01 3 195609165 195609175 TCCAACAACGA - TNK2 Frame_Shift_Del p.S275Pfs*4 0.46 TCGA-13-A5FT-01 3 22424065 22424065 T C HMGB1P5 RNA 0.39 TCGA-13-A5FT-01 3 30734645 30734645 T A TGFBR2 3'UTR 0.43 TCGA-13-A5FT-01 3 39149005 39149005 G A GORASP1 Missense_Mutation p.P10S 0.88 tolerated(0.12) benign(0.008) TCGA-13-A5FT-01 3 87018034 87018034 C G VGLL3 Missense_Mutation p.V215L 0.40 tolerated(0.15) benign(0.104) TCGA-13-A5FT-01 4 119552902 119552902 C G RP11-384K6.6 RNA 0.33 TCGA-13-A5FT-01 4 123170750 123170750 G T KIAA1109 Missense_Mutation p.V1875F 0.68 benign(0.044) TCGA-13-A5FT-01 5 1461950 1461950 T C LPCAT1 3'UTR 0.26 TCGA-13-A5FT-01 5 167984208 167984208 A G PANK3 3'UTR 0.51 TCGA-13-A5FT-01 5 180661279 180661279 C T TRIM41 Missense_Mutation p.P466L 0.46 deleterious(0) probably_damaging(0.985) TCGA-13-A5FT-01 5 24487423 24487423 T A CDH10 3'UTR 0.36 TCGA-13-A5FT-01 5 37183212 37183212 C T C5orf42 Missense_Mutation p.D1691N 0.39 tolerated(0.07) benign(0.066) TCGA-13-A5FT-01 5 5460688 5460688 G C KIAA0947 Missense_Mutation p.G414A 0.52 tolerated(0.12) possibly_damaging(0.641) TCGA-13-A5FT-01 5 653466 653467 - C CEP72 3'UTR 0.71 TCGA-13-A5FT-01 6 135787503 135787503 A G AHI1 Silent p.T66T 0.71 TCGA-13-A5FT-01 6 32800418 32800418 G C TAP2 Missense_Mutation p.L377V 0.38 deleterious(0.02) benign(0.34) TCGA-13-A5FT-01 6 33638551 33638551 G A ITPR3 Missense_Mutation p.V849M 0.11 tolerated(0.22) benign(0.012) TCGA-13-A5FT-01 6 36334514 36334514 C A ETV7 Missense_Mutation p.V312F 0.36 tolerated(0.07) benign(0.19) TCGA-13-A5FT-01 6 47682297 47682297 G A GPR115 Missense_Mutation p.R439H 0.44 deleterious(0.01) benign(0.303) TCGA-13-A5FT-01 6 4935902 4935902 A G CDYL Missense_Mutation p.E282G 0.71 deleterious(0) probably_damaging(0.996) TCGA-13-A5FT-01 6 52615270 52615270 C A GSTA2 3'UTR 0.51 TCGA-13-A5FT-01 6 52701164 52701164 C G GSTA5 Missense_Mutation p.G48R 0.21 deleterious(0.03) benign(0.175) TCGA-13-A5FT-01 7 129128136 129128136 G T STRIP2 3'UTR 0.33 TCGA-13-A5FT-01 7 24727185 24727185 G C MPP6 Missense_Mutation p.E525D 0.33 tolerated(0.37) benign(0.026) TCGA-13-A5FT-01 7 31377830 31377830 G T NEUROD6 3'UTR 0.37 TCGA-13-A5FT-01 7 34193413 34193418 AATGGT C BMPER 3'UTR 0.21 TCGA-13-A5FT-01 7 38805185 38805185 G C VPS41 Missense_Mutation p.L442V 0.39 deleterious(0) possibly_damaging(0.571) TCGA-13-A5FT-01 7 87092167 87092167 T C ABCB4 Missense_Mutation p.I65V 0.48 tolerated(0.7) benign(0.006) TCGA-13-A5FT-01 8 125498452 125498452 T G RNF139 Missense_Mutation p.L188V 0.44 tolerated(0.18) benign(0.006) TCGA-13-A5FT-01 8 13947640 13947640 G T SGCZ 3'UTR 0.70 TCGA-13-A5FT-01 8 145094985 145094985 A G SPATC1 Silent p.A129A 0.38 TCGA-13-A5FT-01 8 55537736 55537736 A G RP1 Missense_Mutation p.T432A 0.51 tolerated(0.51) benign(0.051) TCGA-13-A5FT-01 9 104032350 104032350 T G LPPR1 Missense_Mutation p.I84M 0.37 tolerated(0.13) possibly_damaging(0.483) TCGA-13-A5FT-01 9 116346664 116346664 G A RGS3 Missense_Mutation p.G991D 0.78 deleterious(0) probably_damaging(0.973) TCGA-13-A5FT-01 9 131072119 131072119 G A TRUB2 Missense_Mutation p.R236W 0.48 deleterious(0.04) probably_damaging(0.999) TCGA-13-A5FT-01 9 136582497 136582497 C T SARDH Silent p.R367R 0.41 TCGA-13-A5FT-01 9 37899855 37899855 G T SLC25A51 5'UTR 0.47 TCGA-13-A5FT-01 X 103499182 103499182 G A ESX1 Silent p.Y53Y 0.46 TCGA-13-A5FT-01 X 111078295 111078295 T G TRPC5 Missense_Mutation p.N584H 0.20 deleterious(0.01) possibly_damaging(0.734) TCGA-13-A5FT-01 X 19008205 19008205 G A GPR64 3'UTR 0.57 TCGA-13-A5FT-01 X 46884169 46884169 C T JADE3 Missense_Mutation p.R110W 0.31 deleterious(0.03) possibly_damaging(0.479) TCGA-13-A5FT-01 X 88008735 88008737 ATG - CPXCR1 In_Frame_Del p.D108del 0.20 TCGA-13-A5FT-01 X 92965640 92965640 A G FAM133A 3'UTR 0.16 TCGA-13-A5FU-01 10 103292729 103292729 G A BTRC Silent p.L333L 0.20 TCGA-13-A5FU-01 10 104126866 104126866 A C GBF1 Missense_Mutation p.N819H 0.25 tolerated(0.14) benign(0.028) TCGA-13-A5FU-01 10 122622292 122622292 C G WDR11 Missense_Mutation p.S191C 0.23 deleterious(0.01) benign(0.345) TCGA-13-A5FU-01 10 33552752 33552752 G A NRP1 Silent p.S160S 0.08 TCGA-13-A5FU-01 10 49658991 49658991 G C ARHGAP22 Missense_Mutation p.S410C 0.30 tolerated(0.07) probably_damaging(0.917) TCGA-13-A5FU-01 10 5963432 5963432 A G FBXO18 Missense_Mutation p.K792R 0.05 tolerated(0.46) benign(0.025) TCGA-13-A5FU-01 11 101833149 101833149 G A KIAA1377 Silent p.T461T 0.27 TCGA-13-A5FU-01 11 102565756 102565756 C G MMP27 Silent p.L325L 0.08 TCGA-13-A5FU-01 11 119206512 119206512 A G RNF26 Missense_Mutation p.N227S 0.19 deleterious(0.04) benign(0.181) TCGA-13-A5FU-01 11 62620381 62620381 C T SLC3A2 5'Flank 0.24 TCGA-13-A5FU-01 11 65319486 65319486 G A LTBP3 Silent p.S496S 0.09 TCGA-13-A5FU-01 11 6740586 6740586 G A GVINP1 RNA 0.41 TCGA-13-A5FU-01 12 18793467 18793467 G C PIK3C2G Silent p.T1388T 0.09 TCGA-13-A5FU-01 12 32134757 32134757 C G KIAA1551 Missense_Mutation p.P290A 0.17 deleterious(0.05) possibly_damaging(0.758) TCGA-13-A5FU-01 12 49420213 49420213 C T KMT2D Missense_Mutation p.R5179H 0.47 unknown(0) TCGA-13-A5FU-01 12 50474336 50474336 G A ASIC1 Missense_Mutation p.E421K 0.09 deleterious(0) probably_damaging(0.994) TCGA-13-A5FU-01 12 71286728 71286728 A T PTPRR Missense_Mutation p.L30M 0.06 tolerated_low_confidence(0.11) benign(0.02) TCGA-13-A5FU-01 13 20715723 20715723 C A GJA3 3'UTR 0.67 TCGA-13-A5FU-01 13 50207698 50207698 C T ARL11 3'UTR 0.32 TCGA-13-A5FU-01 14 105836220 105836220 T G PACS2 Missense_Mutation p.F262V 0.12 tolerated(0.06) probably_damaging(0.999) TCGA-13-A5FU-01 14 22616331 22616331 G C TRAV27 Missense_Mutation p.Q24H 0.15 tolerated(0.05) possibly_damaging(0.82) TCGA-13-A5FU-01 14 39716500 39716500 C T MIA2 Missense_Mutation p.S241L 0.09 tolerated(0.11) benign(0.22) TCGA-13-A5FU-01 15 28356855 28356855 C T HERC2 3'UTR 0.25 TCGA-13-A5FU-01 15 42178308 42178308 C T SPTBN5 Missense_Mutation p.R382H 0.29 probably_damaging(1) TCGA-13-A5FU-01 16 25258166 25258166 C A ZKSCAN2 Missense_Mutation p.A451S 0.15 tolerated(0.74) benign(0.002) TCGA-13-A5FU-01 16 67473031 67473031 G T ATP6V0D1 Missense_Mutation p.A220D 0.23 deleterious(0) probably_damaging(0.952) TCGA-13-A5FU-01 16 698219 698219 G - FAM195A 3'UTR 0.31 TCGA-13-A5FU-01 16 88788378 88788378 G A PIEZO1 Silent p.A1684A 0.57 TCGA-13-A5FU-01 17 30348635 30348635 C T LRRC37B Missense_Mutation p.T157I 0.23 deleterious(0) benign(0.022) TCGA-13-A5FU-01 17 61904939 61904939 G T FTSJ3 5'UTR 0.61 TCGA-13-A5FU-01 17 64728934 64728934 T A PRKCA Missense_Mutation p.S349R 0.40 deleterious(0) probably_damaging(0.99) TCGA-13-A5FU-01 17 72937898 72937898 G T OTOP3 Missense_Mutation p.V162L 0.34 tolerated(1) probably_damaging(0.994) TCGA-13-A5FU-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.80 tolerated(0.13) possibly_damaging(0.631) TCGA-13-A5FU-01 18 56651734 56651734 T C ZNF532 3'UTR 0.19 TCGA-13-A5FU-01 18 9257080 9257080 G A ANKRD12 Missense_Mutation p.R1272Q 0.31 deleterious(0.03) benign(0.122) TCGA-13-A5FU-01 19 45017336 45017336 G T CEACAM20 RNA 0.16 TCGA-13-A5FU-01 1 152383342 152383342 C A CRNN Missense_Mutation p.K72N 0.12 deleterious(0.02) benign(0.022) TCGA-13-A5FU-01 1 156843473 156843473 G T NTRK1 Missense_Mutation p.C300F 0.37 deleterious(0) probably_damaging(1) TCGA-13-A5FU-01 1 169390769 169390769 A T CCDC181 Silent p.T300T 0.10 TCGA-13-A5FU-01 1 228335226 228335226 C T GUK1 Missense_Mutation p.P145L 0.19 deleterious(0) probably_damaging(0.995) TCGA-13-A5FU-01 1 237167519 237167519 C A MT1HL1 Missense_Mutation p.G52W 0.15 deleterious(0) unknown(0) TCGA-13-A5FU-01 1 244852633 244852633 A G DESI2 Silent p.T66T 0.10 TCGA-13-A5FU-01 1 26387724 26387724 C T TRIM63 Missense_Mutation p.C145Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-13-A5FU-01 1 31351497 31351497 C T SDC3 Missense_Mutation p.D77N 0.15 deleterious(0.02) probably_damaging(0.966) TCGA-13-A5FU-01 1 32205130 32205130 G T BAI2 Silent p.R758R 0.35 TCGA-13-A5FU-01 1 32832039 32832039 G A BSDC1 3'Flank 0.09 TCGA-13-A5FU-01 1 35251191 35251191 T A GJB3 3'UTR 0.14 TCGA-13-A5FU-01 1 42948469 42948469 A G CCDC30 5'UTR 0.08 TCGA-13-A5FU-01 1 86851225 86851225 A T ODF2L Silent p.L54L 0.24 TCGA-13-A5FU-01 1 95699768 95699768 G A RWDD3 5'UTR 0.42 TCGA-13-A5FU-01 20 43942771 43942771 C A RBPJL Missense_Mutation p.T285K 0.14 tolerated(0.06) possibly_damaging(0.809) TCGA-13-A5FU-01 20 46313201 46313201 T A SULF2 Missense_Mutation p.M288L 0.20 tolerated(0.99) benign(0.001) TCGA-13-A5FU-01 2 110015273 110015273 C T SH3RF3 Silent p.S391S 0.31 TCGA-13-A5FU-01 2 11778850 11778850 G A GREB1 Silent p.S1867S 0.53 TCGA-13-A5FU-01 2 132288307 132288307 C T CCDC74A Missense_Mutation p.R151C 0.09 tolerated(0.05) benign(0.121) TCGA-13-A5FU-01 2 170806532 170806532 A G UBR3 Missense_Mutation p.K1168E 0.47 tolerated(0.36) probably_damaging(0.986) TCGA-13-A5FU-01 2 173370591 173370591 C T ITGA6 3'UTR 0.10 TCGA-13-A5FU-01 2 202672367 202672367 G A CDK15 Splice_Site p.X91_splice 0.15 TCGA-13-A5FU-01 2 238277415 238277415 C T COL6A3 Missense_Mutation p.R1564H 0.36 benign(0.023) TCGA-13-A5FU-01 2 24929492 24929492 C T NCOA1 Nonsense_Mutation p.R385* 0.16 TCGA-13-A5FU-01 2 60688058 60688058 G A BCL11A Silent p.Y663Y 0.29 TCGA-13-A5FU-01 2 71213473 71213473 G C TEX261 3'UTR 0.27 TCGA-13-A5FU-01 3 127379463 127379463 G C PODXL2 Missense_Mutation p.E198Q 0.28 tolerated(0.29) benign(0.01) TCGA-13-A5FU-01 3 148614671 148614671 A T CPA3 3'UTR 0.23 TCGA-13-A5FU-01 3 151164897 151164897 C G IGSF10 Missense_Mutation p.V958L 0.27 tolerated(0.24) benign(0.003) TCGA-13-A5FU-01 3 180325485 180325485 G A TTC14 Missense_Mutation p.A408T 0.34 deleterious(0) probably_damaging(0.983) TCGA-13-A5FU-01 3 188594584 188594584 T G LPP 3'UTR 0.12 TCGA-13-A5FU-01 3 190936590 190936590 A G OSTN Missense_Mutation p.K53E 0.22 deleterious(0) probably_damaging(0.999) TCGA-13-A5FU-01 3 195935380 195935380 A T ZDHHC19 Missense_Mutation p.F154I 0.21 deleterious(0) probably_damaging(0.916) TCGA-13-A5FU-01 3 33118687 33118687 G A GLB1 Intron 0.26 TCGA-13-A5FU-01 3 46658713 46658713 G A TDGF1 RNA 0.09 TCGA-13-A5FU-01 3 50416889 50416889 C T CACNA2D2 Missense_Mutation p.E376K 0.12 tolerated(0.3) benign(0.069) TCGA-13-A5FU-01 3 52745625 52745625 T C NEK4 3'UTR 0.29 TCGA-13-A5FU-01 4 113108894 113108895 - T C4orf32 3'UTR 0.11 TCGA-13-A5FU-01 4 146095852 146095852 A G OTUD4 Silent p.C3C 0.11 TCGA-13-A5FU-01 4 44652115 44652115 C T YIPF7 Missense_Mutation p.M25I 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.851) TCGA-13-A5FU-01 4 780321 780321 G A CPLX1 Missense_Mutation p.P125S 0.30 deleterious(0.01) possibly_damaging(0.626) TCGA-13-A5FU-01 4 84406262 84406262 C A FAM175A 5'UTR 0.13 TCGA-13-A5FU-01 5 109103333 109103333 C T MAN2A1 Silent p.I311I 0.13 TCGA-13-A5FU-01 5 140176690 140176690 C T PCDHA2 Missense_Mutation p.T714M 0.24 deleterious_low_confidence(0.03) benign(0.317) TCGA-13-A5FU-01 5 140579867 140579867 C A PCDHB11 Missense_Mutation p.P174T 0.20 tolerated_low_confidence(0.06) benign(0.303) TCGA-13-A5FU-01 5 166802327 166802327 C T TENM2 Silent p.S117S 0.16 TCGA-13-A5FU-01 5 76114896 76114896 G C F2RL1 5'UTR 0.22 TCGA-13-A5FU-01 5 95726664 95726664 G T PCSK1 3'UTR 0.33 TCGA-13-A5FU-01 6 119522418 119522418 C T MAN1A1 Splice_Site p.X404_splice 0.51 TCGA-13-A5FU-01 6 26637669 26637669 T A ZNF322 Silent p.T371T 0.19 TCGA-13-A5FU-01 6 27805967 27805967 A T HIST1H2AK Missense_Mutation p.Y51N 0.27 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-13-A5FU-01 6 33271643 33271643 C T TAPBP Missense_Mutation p.G475D 0.26 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-13-A5FU-01 6 41743323 41743323 C G FRS3 Missense_Mutation p.E29D 0.29 tolerated(1) possibly_damaging(0.785) TCGA-13-A5FU-01 6 43514476 43514476 A G XPO5 Missense_Mutation p.V725A 0.23 tolerated(0.29) benign(0.041) TCGA-13-A5FU-01 7 100478916 100478916 C T SRRT Missense_Mutation p.R45C 0.31 deleterious(0) unknown(0) TCGA-13-A5FU-01 7 123295934 123295934 C A LMOD2 5'UTR 0.28 TCGA-13-A5FU-01 7 131817921 131817921 C T PLXNA4 Missense_Mutation p.D1826N 0.19 deleterious(0) probably_damaging(1) TCGA-13-A5FU-01 7 142231614 142231614 G T TRBV10-1 Silent p.A101A 0.12 TCGA-13-A5FU-01 7 158526354 158526354 G A ESYT2 3'UTR 0.57 TCGA-13-A5FU-01 7 21628977 21628977 T C DNAH11 Missense_Mutation p.F709L 0.06 benign(0.001) TCGA-13-A5FU-01 7 91747875 91747875 G T CYP51A1 Missense_Mutation p.P381T 0.19 deleterious(0) probably_damaging(0.989) TCGA-13-A5FU-01 8 144457792 144457792 A C RHPN1 Missense_Mutation p.I44L 0.04 deleterious(0.01) benign(0.297) TCGA-13-A5FU-01 8 55534723 55534723 C T RP1 Missense_Mutation p.A221V 0.12 deleterious(0.03) probably_damaging(0.936) TCGA-13-A5FU-01 9 140850184 140850184 C T CACNA1B Missense_Mutation p.R369C 0.16 deleterious(0) benign(0.428) TCGA-13-A5FU-01 9 42472219 42472219 G C FAM95B1 RNA 0.27 TCGA-13-A5FU-01 9 77377350 77377350 A T TRPM6 Missense_Mutation p.L1413I 0.42 tolerated_low_confidence(0.35) benign(0.001) TCGA-13-A5FU-01 9 99157225 99157225 C T ZNF367 Splice_Site p.X191_splice 0.14 TCGA-13-A5FU-01 X 10588454 10588454 C T MID1 5'UTR 0.17 TCGA-13-A5FU-01 X 123775833 123775833 G A TENM1 Silent p.L629L 0.10 TCGA-13-A5FU-01 X 135314002 135314002 C T MAP7D3 Missense_Mutation p.V372M 0.14 tolerated(0.21) benign(0.205) TCGA-13-A5FU-01 X 148770638 148770638 G A MAGEA11 Translation_Start_Site p.M1? 0.22 benign(0.043) TCGA-13-A5FU-01 X 153420071 153420071 A G OPN1LW Missense_Mutation p.T201A 0.18 deleterious(0.02) possibly_damaging(0.644) TCGA-13-A5FU-01 X 44938476 44938476 A C KDM6A Silent p.A1008A 0.06 TCGA-13-A5FU-01 X 52677358 52677358 C A SSX7 Missense_Mutation p.C140F 0.10 tolerated(0.1) benign(0.127) TCGA-13-A5FU-01 X 69507585 69507585 G A PDZD11 Silent p.S108S 0.14 TCGA-13-A5FU-01 X 70749592 70749592 C A OGT 5'Flank 0.35 TCGA-13-A5FU-01 X 73524291 73524291 G A ZCCHC13 Missense_Mutation p.G64R 0.11 deleterious(0.01) benign(0.155) TCGA-13-A5FU-01 X 91134032 91134032 C G PCDH11X Missense_Mutation p.D931E 0.15 tolerated(0.1) benign(0.068) TCGA-20-0991-01 10 100143488 100143488 G A PYROXD2 3'UTR 0.64 TCGA-20-0991-01 10 102048070 102048070 A T PKD2L1 3'UTR 0.38 TCGA-20-0991-01 10 112269926 112269926 G A DUSP5 Missense_Mutation p.M299I 0.22 tolerated(1) benign(0) TCGA-20-0991-01 10 121203154 121203154 C T GRK5 Missense_Mutation p.R386C 0.67 deleterious(0) probably_damaging(0.984) TCGA-20-0991-01 10 129901523 129901523 G A MKI67 Missense_Mutation p.L2861F 0.10 tolerated(0.11) probably_damaging(0.939) TCGA-20-0991-01 10 134161772 134161772 G A LRRC27 Missense_Mutation p.D280N 0.21 tolerated(1) benign(0) TCGA-20-0991-01 10 134161783 134161783 G A LRRC27 Silent p.L283L 0.16 TCGA-20-0991-01 10 134648925 134648925 C T TTC40 Silent p.V2209V 0.12 TCGA-20-0991-01 10 135342060 135342060 G A CYP2E1 Missense_Mutation p.A85T 0.06 deleterious(0.04) probably_damaging(0.961) TCGA-20-0991-01 10 46998899 46998899 G A GPRIN2 Missense_Mutation p.E7K 0.18 deleterious_low_confidence(0.05) possibly_damaging(0.794) TCGA-20-0991-01 10 5803343 5803344 CT - FAM208B Frame_Shift_Del p.R2363Ifs*20 0.10 TCGA-20-0991-01 10 71913618 71913618 C T SAR1A Silent p.G152G 0.07 TCGA-20-0991-01 10 73461899 73461899 C T CDH23 Silent p.L432L 0.84 TCGA-20-0991-01 10 75673405 75673405 A G PLAU Missense_Mutation p.Q190R 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-20-0991-01 10 75673406 75673406 G A PLAU Silent p.Q190Q 0.29 TCGA-20-0991-01 10 88476450 88476450 G A LDB3 Missense_Mutation p.R538K 0.23 deleterious(0.04) possibly_damaging(0.815) TCGA-20-0991-01 10 93947 93947 A T TUBB8 Missense_Mutation p.C129S 0.41 tolerated_low_confidence(0.08) benign(0.412) TCGA-20-0991-01 10 94234621 94234621 T G IDE Missense_Mutation p.D698A 0.20 tolerated(0.12) benign(0.004) TCGA-20-0991-01 11 110454442 110454442 T C ARHGAP20 Missense_Mutation p.R479G 0.20 deleterious(0.04) probably_damaging(0.983) TCGA-20-0991-01 11 111385565 111385566 - C C11orf88 Frame_Shift_Ins p.L23Ifs*16 0.07 TCGA-20-0991-01 11 116692493 116692493 T G APOA4 Missense_Mutation p.D94A 0.27 tolerated(0.08) benign(0.139) TCGA-20-0991-01 11 120673537 120673537 G A GRIK4 Missense_Mutation p.R73K 0.18 tolerated(0.87) benign(0.001) TCGA-20-0991-01 11 120673539 120673539 G A GRIK4 Missense_Mutation p.D74N 0.18 tolerated(0.24) probably_damaging(0.997) TCGA-20-0991-01 11 123811064 123811064 G A OR4D5 Silent p.V247V 0.03 TCGA-20-0991-01 11 128680520 128680520 C T FLI1 Silent p.Y332Y 0.40 TCGA-20-0991-01 11 16863128 16863128 C T PLEKHA7 Missense_Mutation p.A280T 0.04 deleterious(0.01) possibly_damaging(0.554) TCGA-20-0991-01 11 16863135 16863135 C T PLEKHA7 Missense_Mutation p.M277I 0.04 deleterious(0) benign(0.308) TCGA-20-0991-01 11 44130759 44130759 G T EXT2 Silent p.T217T 0.16 TCGA-20-0991-01 11 46341985 46341985 G A CREB3L1 Missense_Mutation p.E477K 0.13 tolerated_low_confidence(0.06) possibly_damaging(0.722) TCGA-20-0991-01 11 46702600 46702600 A C ARHGAP1 Missense_Mutation p.V199G 0.20 deleterious(0) possibly_damaging(0.451) TCGA-20-0991-01 11 62286552 62286552 G C AHNAK Missense_Mutation p.L5113V 0.55 benign(0.053) TCGA-20-0991-01 11 62287657 62287657 A G AHNAK Silent p.P4744P 0.33 TCGA-20-0991-01 11 62289121 62289121 C T AHNAK Silent p.K4256K 0.05 TCGA-20-0991-01 11 65486676 65486676 C G KAT5 3'UTR 0.21 TCGA-20-0991-01 11 66812181 66812181 G A SYT12 Missense_Mutation p.A319T 0.34 deleterious(0.02) benign(0.374) TCGA-20-0991-01 11 66812184 66812184 G A SYT12 Missense_Mutation p.D320N 0.32 deleterious(0.04) probably_damaging(0.951) TCGA-20-0991-01 11 66812185 66812185 G A SYT12 Splice_Site p.X320_splice 0.32 TCGA-20-0991-01 11 77639496 77639496 G A INTS4 Silent p.N421N 0.20 TCGA-20-0991-01 12 108093149 108093149 G A PWP1 Splice_Site p.X249_splice 0.07 TCGA-20-0991-01 12 108930298 108930298 T C SART3 Missense_Mutation p.R480G 0.11 deleterious(0.02) benign(0.268) TCGA-20-0991-01 12 110205819 110205819 G A FAM222A Missense_Mutation p.E29K 0.77 tolerated(0.26) benign(0.113) TCGA-20-0991-01 12 123276578 123276578 G A CCDC62 Missense_Mutation p.E228K 0.39 tolerated(0.07) benign(0.005) TCGA-20-0991-01 12 125396443 125396443 C A UBC Silent p.V625V 0.03 TCGA-20-0991-01 12 126004167 126004167 C T TMEM132B Missense_Mutation p.A425V 0.14 tolerated(0.11) benign(0.161) TCGA-20-0991-01 12 20890101 20890101 A T SLCO1C1 Missense_Mutation p.K481N 0.13 tolerated(0.92) benign(0.102) TCGA-20-0991-01 12 53800433 53800433 A T SP1 Silent p.A580A 0.22 TCGA-20-0991-01 12 54119048 54119048 C T CALCOCO1 Intron 0.60 TCGA-20-0991-01 12 55420538 55420538 C T NEUROD4 Silent p.D105D 0.15 TCGA-20-0991-01 12 56333298 56333298 G A DGKA Missense_Mutation p.G232R 0.23 tolerated(0.12) probably_damaging(1) TCGA-20-0991-01 12 56398442 56398442 T G SUOX Silent p.L423L 0.34 TCGA-20-0991-01 12 57502041 57502041 G A STAT6 Silent p.V7V 0.47 TCGA-20-0991-01 12 66717961 66717961 G A HELB Silent p.L832L 0.15 TCGA-20-0991-01 12 71947044 71947044 G A LGR5 Missense_Mutation p.G207E 0.18 tolerated(0.96) benign(0.097) TCGA-20-0991-01 12 72893328 72893328 C T TRHDE Silent p.D500D 0.12 TCGA-20-0991-01 13 23985470 23985470 T G SACS 5'UTR 0.53 TCGA-20-0991-01 13 31233494 31233494 A C USPL1 3'UTR 0.38 TCGA-20-0991-01 13 33250056 33250056 G A PDS5B Missense_Mutation p.A308T 0.06 deleterious(0) possibly_damaging(0.644) TCGA-20-0991-01 13 33679580 33679580 C G STARD13 3'UTR 0.33 TCGA-20-0991-01 13 38156560 38156560 G A POSTN Silent p.N445N 0.35 TCGA-20-0991-01 13 46559458 46559458 C T ZC3H13 Missense_Mutation p.G565E 0.03 probably_damaging(0.981) TCGA-20-0991-01 13 48986168 48986168 C T LPAR6 Missense_Mutation p.R131K 0.30 tolerated(0.53) benign(0.074) TCGA-20-0991-01 13 52158825 52158825 T C WDFY2 Translation_Start_Site p.M1? 0.52 deleterious(0) possibly_damaging(0.838) TCGA-20-0991-01 13 52693521 52693521 T C NEK5 Missense_Mutation p.K50E 0.31 deleterious(0) probably_damaging(0.931) TCGA-20-0991-01 13 61985871 61985871 T C PCDH20 Silent p.R787R 0.33 TCGA-20-0991-01 14 102452623 102452623 C G DYNC1H1 Missense_Mutation p.D687E 0.42 benign(0.044) TCGA-20-0991-01 14 105410862 105410862 T C AHNAK2 Silent p.K3642K 0.24 TCGA-20-0991-01 14 105410877 105410877 C T AHNAK2 Silent p.K3637K 0.18 TCGA-20-0991-01 14 105818753 105818754 - C PACS2 Frame_Shift_Ins p.S85Qfs*57 0.10 TCGA-20-0991-01 14 21894304 21894304 C T CHD8 Missense_Mutation p.E567K 0.07 deleterious(0.02) benign(0.3) TCGA-20-0991-01 14 24108162 24108162 G A DHRS2 Missense_Mutation p.R30K 0.37 tolerated(0.35) benign(0.007) TCGA-20-0991-01 14 30132919 30132919 C T PRKD1 Missense_Mutation p.D228N 0.41 tolerated(0.35) benign(0.142) TCGA-20-0991-01 14 33836390 33836390 A T NPAS3 Splice_Site p.X129_splice 0.10 TCGA-20-0991-01 14 69808446 69808446 C T GALNT16 Silent p.F412F 0.39 TCGA-20-0991-01 14 74409178 74409178 C T FAM161B Missense_Mutation p.R452K 0.08 tolerated(0.35) benign(0.017) TCGA-20-0991-01 14 76147939 76147939 G A TTLL5 Missense_Mutation p.R78H 0.04 deleterious(0.01) possibly_damaging(0.728) TCGA-20-0991-01 15 34646017 34646017 C - NUTM1 Frame_Shift_Del p.P313Lfs*2 0.16 TCGA-20-0991-01 15 41341575 41341575 G A INO80 Missense_Mutation p.S829F 0.14 deleterious(0) probably_damaging(0.991) TCGA-20-0991-01 15 42058998 42058998 C A MGA Missense_Mutation p.D2906E 0.33 tolerated(0.21) benign(0.059) TCGA-20-0991-01 15 42156109 42156109 G T SPTBN5 Missense_Mutation p.N2344K 0.08 benign(0.1) TCGA-20-0991-01 15 42434744 42434744 G A PLA2G4F Missense_Mutation p.R771C 0.22 tolerated(0.12) benign(0.032) TCGA-20-0991-01 15 52181327 52181327 C G TMOD3 Missense_Mutation p.Q161E 0.11 tolerated(0.24) benign(0) TCGA-20-0991-01 15 59383326 59383326 A T RNF111 Missense_Mutation p.R913S 0.12 deleterious(0.01) probably_damaging(0.98) TCGA-20-0991-01 15 66621559 66621559 G C DIS3L Missense_Mutation p.G786A 0.56 deleterious(0) probably_damaging(0.994) TCGA-20-0991-01 15 91185309 91185309 T G CRTC3 Missense_Mutation p.S599R 0.42 deleterious(0.03) benign(0.133) TCGA-20-0991-01 15 99472878 99472878 C A IGF1R Missense_Mutation p.F958L 0.11 tolerated(0.18) benign(0.001) TCGA-20-0991-01 16 24831467 24831467 T C TNRC6A Silent p.N1696N 0.35 TCGA-20-0991-01 16 28115942 28115942 G A XPO6 Silent p.T957T 0.22 TCGA-20-0991-01 16 29906739 29906739 G C SEZ6L2 Missense_Mutation p.L232V 0.30 tolerated(1) benign(0.326) TCGA-20-0991-01 16 31498730 31498730 T C SLC5A2 Intron 0.54 TCGA-20-0991-01 16 31499718 31499718 G A SLC5A2 Missense_Mutation p.V346M 0.21 deleterious(0) probably_damaging(0.982) TCGA-20-0991-01 16 3165838 3165839 - C ZNF205 Frame_Shift_Ins p.R96Pfs*84 0.20 TCGA-20-0991-01 16 3334023 3334023 T C ZNF263 Missense_Mutation p.W69R 0.63 deleterious(0) probably_damaging(0.999) TCGA-20-0991-01 16 66997786 66997786 G A CES3 Missense_Mutation p.D170N 0.13 tolerated(0.47) possibly_damaging(0.513) TCGA-20-0991-01 16 66997789 66997789 G A CES3 Missense_Mutation p.V171M 0.13 deleterious(0.01) possibly_damaging(0.869) TCGA-20-0991-01 16 84472840 84472840 T C ATP2C2 Missense_Mutation p.L352P 0.76 deleterious(0) probably_damaging(0.974) TCGA-20-0991-01 16 89347698 89347698 G C ANKRD11 Missense_Mutation p.A1751G 0.52 benign(0.004) TCGA-20-0991-01 17 26816346 26816346 G A SLC13A2 Missense_Mutation p.V73M 0.19 tolerated(0.51) benign(0.002) TCGA-20-0991-01 17 26890860 26890862 CCT - PIGS In_Frame_Del p.E117del 0.14 TCGA-20-0991-01 17 33904601 33904601 C T PEX12 Missense_Mutation p.E46K 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-20-0991-01 17 34499265 34499265 A C TBC1D3B Missense_Mutation p.I149R 0.28 deleterious(0) benign(0.278) TCGA-20-0991-01 17 38349236 38349236 G A RAPGEFL1 Silent p.E395E 0.11 TCGA-20-0991-01 17 39670338 39670338 G A KRT15 Silent p.F436F 0.08 TCGA-20-0991-01 17 56327811 56327811 G A LPO Silent p.L203L 0.09 TCGA-20-0991-01 17 7577559 7577559 G A TP53 Missense_Mutation p.S241F 0.41 deleterious(0) probably_damaging(1) TCGA-20-0991-01 17 76989694 76989694 G A CANT1 Missense_Mutation p.R382C 0.50 deleterious(0) possibly_damaging(0.743) TCGA-20-0991-01 17 904288 904288 T G TIMM22 Missense_Mutation p.F182C 0.20 deleterious(0) probably_damaging(1) TCGA-20-0991-01 17 904289 904289 T G TIMM22 Missense_Mutation p.F182L 0.20 deleterious(0) probably_damaging(0.998) TCGA-20-0991-01 18 33613674 33613674 G A RPRD1A Missense_Mutation p.S93L 0.05 deleterious(0.03) benign(0.309) TCGA-20-0991-01 18 47091836 47091836 G A LIPG Missense_Mutation p.A83T 0.47 tolerated(0.21) possibly_damaging(0.512) TCGA-20-0991-01 19 12256244 12256244 T C ZNF625 Silent p.K329K 0.03 TCGA-20-0991-01 19 12637613 12637613 T C ZNF564 Missense_Mutation p.R437G 0.03 deleterious(0) possibly_damaging(0.454) TCGA-20-0991-01 19 13227156 13227156 T A TRMT1 Nonsense_Mutation p.R20* 0.26 TCGA-20-0991-01 19 13339595 13339595 T A CACNA1A Intron 0.08 TCGA-20-0991-01 19 1418332 1418332 T G DAZAP1 Missense_Mutation p.V67G 0.46 deleterious(0) unknown(0) TCGA-20-0991-01 19 17088351 17088351 C T CPAMD8 Splice_Site p.X576_splice 0.05 TCGA-20-0991-01 19 36435738 36435739 - C LRFN3 Frame_Shift_Ins p.G571Rfs*10 0.10 TCGA-20-0991-01 19 36581382 36581382 G A WDR62 Missense_Mutation p.C665Y 0.07 deleterious(0.01) probably_damaging(0.976) TCGA-20-0991-01 19 37904396 37904396 T C ZNF569 Silent p.G388G 0.18 TCGA-20-0991-01 19 37904402 37904402 C T ZNF569 Silent p.E386E 0.14 TCGA-20-0991-01 19 37976014 37976014 C T ZNF570 Missense_Mutation p.P497L 0.17 deleterious(0.02) probably_damaging(1) TCGA-20-0991-01 19 38126053 38126053 T C ZFP30 Silent p.E463E 0.07 TCGA-20-0991-01 19 38160142 38160142 A G ZNF781 Missense_Mutation p.I303T 0.60 tolerated(0.42) benign(0.152) TCGA-20-0991-01 19 38160485 38160485 G A ZNF781 Missense_Mutation p.L189F 0.76 tolerated(0.43) possibly_damaging(0.587) TCGA-20-0991-01 19 38160486 38160486 T C ZNF781 Silent p.L188L 0.75 TCGA-20-0991-01 19 39955485 39955485 C T SUPT5H Silent p.Y224Y 0.70 TCGA-20-0991-01 19 41383249 41383249 C G CYP2A7 Missense_Mutation p.G336A 0.16 deleterious(0) benign(0.359) TCGA-20-0991-01 19 44537132 44537132 G A ZNF222 Silent p.K475K 0.06 TCGA-20-0991-01 19 44740311 44740311 T C ZNF227 Silent p.Y576Y 0.06 TCGA-20-0991-01 19 47570553 47570553 T C ZC3H4 Missense_Mutation p.K991R 0.31 unknown(0) TCGA-20-0991-01 19 50964807 50964807 C T MYBPC2 Silent p.F980F 0.05 TCGA-20-0991-01 19 53014994 53014994 T C ZNF578 Missense_Mutation p.S454P 0.12 tolerated(1) benign(0.003) TCGA-20-0991-01 19 53302181 53302181 G A ZNF28 3'UTR 0.08 TCGA-20-0991-01 19 54254465 54254465 T C MIR522 RNA 0.37 TCGA-20-0991-01 19 54254477 54254477 T A MIR522 RNA 0.47 TCGA-20-0991-01 19 54255664 54255664 A C MIR519A1 RNA 0.50 TCGA-20-0991-01 19 54803173 54803173 C T LILRA3 Silent p.L168L 0.17 TCGA-20-0991-01 19 54803196 54803196 C T LILRA3 Missense_Mutation p.E161K 0.19 tolerated(0.08) possibly_damaging(0.665) TCGA-20-0991-01 19 56896183 56896183 A G ZNF582 Silent p.C201C 0.28 TCGA-20-0991-01 19 57036831 57036831 G C ZNF471 Silent p.G465G 0.12 TCGA-20-0991-01 19 57840501 57840501 T C ZNF543 Silent p.H557H 0.17 TCGA-20-0991-01 19 57932253 57932253 T A ZNF17 Missense_Mutation p.S465T 0.07 tolerated(1) benign(0.002) TCGA-20-0991-01 19 58232297 58232297 C T ZNF671 Missense_Mutation p.R386Q 0.69 tolerated(1) benign(0.113) TCGA-20-0991-01 19 6665098 6665098 C T TNFSF14 Missense_Mutation p.G188R 0.20 tolerated(0.1) benign(0.013) TCGA-20-0991-01 1 109815314 109815314 G A CELSR2 Missense_Mutation p.G2703S 0.32 tolerated(1) benign(0.003) TCGA-20-0991-01 1 109815332 109815332 G A CELSR2 Missense_Mutation p.G2709S 0.29 tolerated(0.73) benign(0.007) TCGA-20-0991-01 1 114483238 114483238 C A HIPK1 Missense_Mutation p.A78D 0.48 deleterious(0) possibly_damaging(0.856) TCGA-20-0991-01 1 12836244 12836244 C A PRAMEF12 Missense_Mutation p.H282Q 0.08 tolerated(0.28) probably_damaging(0.944) TCGA-20-0991-01 1 151314856 151314856 C T RFX5 Missense_Mutation p.E553K 0.09 deleterious_low_confidence(0.01) benign(0.242) TCGA-20-0991-01 1 152275842 152275842 A G FLG Silent p.S3840S 0.04 TCGA-20-0991-01 1 152275843 152275843 G A FLG Missense_Mutation p.S3840F 0.04 unknown(0) TCGA-20-0991-01 1 152276150 152276150 G A FLG Missense_Mutation p.R3738C 0.09 unknown(0) TCGA-20-0991-01 1 152276161 152276161 C T FLG Missense_Mutation p.R3734K 0.07 unknown(0) TCGA-20-0991-01 1 152283198 152283198 T C FLG Silent p.R1388R 0.04 TCGA-20-0991-01 1 152283200 152283200 G A FLG Nonsense_Mutation p.R1388* 0.04 TCGA-20-0991-01 1 152323609 152323609 C T FLG2 Missense_Mutation p.R2218K 0.08 benign(0.242) TCGA-20-0991-01 1 152326414 152326414 T C FLG2 Missense_Mutation p.K1283R 0.12 benign(0.042) TCGA-20-0991-01 1 152488084 152488084 C T CRCT1 Silent p.C75C 0.41 TCGA-20-0991-01 1 152595424 152595424 G A LCE3A Silent p.H52H 0.49 TCGA-20-0991-01 1 152595426 152595426 G A LCE3A Missense_Mutation p.H52Y 0.49 deleterious_low_confidence(0.01) unknown(0) TCGA-20-0991-01 1 152595447 152595447 G A LCE3A Missense_Mutation p.R45C 0.39 deleterious_low_confidence(0.04) unknown(0) TCGA-20-0991-01 1 156264616 156264616 G A C1orf85 Silent p.P104P 0.12 TCGA-20-0991-01 1 156785616 156785616 C T SH2D2A Intron 0.14 TCGA-20-0991-01 1 160268941 160268941 G A COPA Missense_Mutation p.P603L 0.11 tolerated(0.07) benign(0.003) TCGA-20-0991-01 1 160788045 160788045 C T LY9 Silent p.F460F 0.08 TCGA-20-0991-01 1 160788075 160788075 C T LY9 Silent p.I470I 0.07 TCGA-20-0991-01 1 160788078 160788078 C T LY9 Silent p.F471F 0.06 TCGA-20-0991-01 1 161163815 161163815 G C ADAMTS4 Missense_Mutation p.H486Q 0.10 deleterious(0) possibly_damaging(0.68) TCGA-20-0991-01 1 165386408 165386408 C G RXRG Missense_Mutation p.K164N 0.07 deleterious(0) probably_damaging(0.998) TCGA-20-0991-01 1 170699491 170699491 T C PRRX1 Intron 0.31 TCGA-20-0991-01 1 184042011 184042011 C T TSEN15 3'UTR 0.10 TCGA-20-0991-01 1 205272784 205272784 C T NUAK2 Missense_Mutation p.E561K 0.10 tolerated_low_confidence(0.06) benign(0.002) TCGA-20-0991-01 1 216062312 216062312 T C USH2A Missense_Mutation p.N2560S 0.47 possibly_damaging(0.764) TCGA-20-0991-01 1 228466512 228466512 G A OBSCN Missense_Mutation p.E2757K 0.12 probably_damaging(0.998) TCGA-20-0991-01 1 23693628 23693628 G A ZNF436 Missense_Mutation p.L23F 0.43 tolerated(1) benign(0.008) TCGA-20-0991-01 1 241798365 241798365 G A CHML Missense_Mutation p.S235L 0.06 deleterious(0.01) probably_damaging(1) TCGA-20-0991-01 1 243652358 243652358 G T SDCCAG8 Missense_Mutation p.Q676H 0.27 deleterious(0.01) possibly_damaging(0.793) TCGA-20-0991-01 1 39853154 39853154 C T MACF1 Silent p.L2818L 0.03 TCGA-20-0991-01 1 42045958 42045958 G A HIVEP3 Missense_Mutation p.S1504L 0.10 benign(0.002) TCGA-20-0991-01 1 44438290 44438290 T C DPH2 3'UTR 0.24 TCGA-20-0991-01 1 45098044 45098044 G A RNF220 Silent p.Q312Q 0.03 TCGA-20-0991-01 1 47564900 47564900 G T CYP4Z1 Missense_Mutation p.Q337H 0.05 deleterious(0) probably_damaging(0.934) TCGA-20-0991-01 1 57173243 57173243 A G PRKAA2 Missense_Mutation p.T506A 0.42 tolerated(0.77) benign(0.001) TCGA-20-0991-01 1 7887623 7887623 C T PER3 Silent p.F870F 0.03 TCGA-20-0991-01 20 10622147 10622147 C T JAG1 Silent p.A959A 0.32 TCGA-20-0991-01 20 17434520 17434520 C T PCSK2 Missense_Mutation p.T340I 0.41 tolerated(0.25) probably_damaging(0.996) TCGA-20-0991-01 20 2464368 2464368 C T ZNF343 Silent p.E413E 0.15 TCGA-20-0991-01 20 279267 279267 G A ZCCHC3 Missense_Mutation p.G347D 0.07 tolerated(0.11) benign(0.001) TCGA-20-0991-01 20 279281 279281 G A ZCCHC3 Missense_Mutation p.D352N 0.07 tolerated(0.56) benign(0.031) TCGA-20-0991-01 20 30898259 30898259 G A KIF3B Missense_Mutation p.E227K 0.28 deleterious(0.01) benign(0.096) TCGA-20-0991-01 20 36859664 36859664 G A KIAA1755 Missense_Mutation p.A604V 0.39 deleterious(0.02) possibly_damaging(0.589) TCGA-20-0991-01 20 44037576 44037576 C T DBNDD2 Missense_Mutation p.S194F 0.05 deleterious(0.01) possibly_damaging(0.883) TCGA-20-0991-01 20 9346157 9346157 A C PLCB4 Silent p.R167R 0.13 TCGA-20-0991-01 21 30257607 30257607 C A N6AMT1 Missense_Mutation p.D21Y 0.08 benign(0.06) TCGA-20-0991-01 21 44108048 44108048 G A PDE9A Silent p.L54L 0.20 TCGA-20-0991-01 21 45949824 45949824 T C TSPEAR Missense_Mutation p.Q216R 0.86 deleterious(0.01) possibly_damaging(0.701) TCGA-20-0991-01 22 31737388 31737388 A G PATZ1 Intron 0.34 TCGA-20-0991-01 22 42610624 42610624 G A TCF20 Nonsense_Mutation p.Q230* 0.11 TCGA-20-0991-01 2 100623097 100623097 C T AFF3 Silent p.G315G 0.42 TCGA-20-0991-01 2 100623099 100623099 C T AFF3 Missense_Mutation p.G315R 0.41 tolerated(0.25) benign(0.395) TCGA-20-0991-01 2 100623100 100623100 C T AFF3 Silent p.Q314Q 0.41 TCGA-20-0991-01 2 108924986 108924986 C G SULT1C2 3'UTR 0.33 TCGA-20-0991-01 2 121747935 121747935 G T GLI2 Missense_Mutation p.S1482I 0.16 deleterious(0.04) possibly_damaging(0.507) TCGA-20-0991-01 2 133542216 133542216 C G NCKAP5 Missense_Mutation p.R723T 0.43 deleterious(0.01) benign(0.001) TCGA-20-0991-01 2 136437752 136437752 C T R3HDM1 Missense_Mutation p.P738S 0.07 tolerated(0.06) benign(0.008) TCGA-20-0991-01 2 136564711 136564711 G A LCT Missense_Mutation p.S1387F 0.15 deleterious(0) possibly_damaging(0.908) TCGA-20-0991-01 2 145147028 145147028 T C ZEB2 Missense_Mutation p.D1212G 0.06 deleterious_low_confidence(0) benign(0.023) TCGA-20-0991-01 2 15758310 15758310 G C DDX1 Silent p.G374G 0.42 TCGA-20-0991-01 2 170062032 170062032 G T LRP2 Missense_Mutation p.L2558M 0.26 possibly_damaging(0.795) TCGA-20-0991-01 2 170097655 170097655 G A LRP2 Silent p.C1296C 0.06 TCGA-20-0991-01 2 178982796 178982796 C T RBM45 Silent p.I146I 0.16 TCGA-20-0991-01 2 209190717 209190717 C T PIKFYVE Missense_Mutation p.T1061I 0.39 tolerated(0.29) benign(0.005) TCGA-20-0991-01 2 217724284 217724284 C T TNP1 3'UTR 0.83 TCGA-20-0991-01 2 233498690 233498690 C T EFHD1 Silent p.I92I 0.17 TCGA-20-0991-01 2 238722286 238722286 G C RBM44 Missense_Mutation p.G13R 0.10 deleterious(0.01) possibly_damaging(0.897) TCGA-20-0991-01 2 25965566 25965566 G C ASXL2 Missense_Mutation p.P1214A 0.16 tolerated(0.08) benign(0.008) TCGA-20-0991-01 2 66664969 66664969 A T MEIS1 Missense_Mutation p.H38L 0.39 tolerated(0.17) probably_damaging(0.995) TCGA-20-0991-01 2 95539243 95539243 C A TEKT4 Intron 0.18 TCGA-20-0991-01 3 10123070 10123070 G A FANCD2 Missense_Mutation p.G1049E 0.13 tolerated(0.2) benign(0.044) TCGA-20-0991-01 3 112999991 112999991 G A BOC Missense_Mutation p.E808K 0.07 deleterious(0) probably_damaging(0.998) TCGA-20-0991-01 3 126735390 126735391 - C PLXNA1 Frame_Shift_Ins p.G1018Rfs*22 0.09 TCGA-20-0991-01 3 151105860 151105860 G A MED12L Missense_Mutation p.R1749K 0.73 tolerated(1) benign(0.002) TCGA-20-0991-01 3 151105861 151105861 G T MED12L Missense_Mutation p.R1749S 0.74 tolerated(0.07) benign(0.084) TCGA-20-0991-01 3 178976863 178976863 C T LRRFIP1P1 RNA 0.08 TCGA-20-0991-01 3 193174848 193174848 C T ATP13A4 Missense_Mutation p.R619Q 0.19 tolerated(0.41) benign(0.009) TCGA-20-0991-01 3 195295826 195295826 A G APOD Missense_Mutation p.I172T 0.22 deleterious(0) probably_damaging(1) TCGA-20-0991-01 3 42678741 42678741 C A NKTR Missense_Mutation p.S515R 0.12 deleterious_low_confidence(0.02) unknown(0) TCGA-20-0991-01 3 42739827 42739827 C T HHATL Missense_Mutation p.G167D 0.15 tolerated(0.33) benign(0.424) TCGA-20-0991-01 3 50382649 50382649 T C ZMYND10 Missense_Mutation p.H36R 0.24 tolerated(0.07) possibly_damaging(0.468) TCGA-20-0991-01 3 58154219 58154219 A T FLNB Missense_Mutation p.L2448F 0.27 deleterious(0) probably_damaging(0.999) TCGA-20-0991-01 3 93782042 93782042 G A DHFRL1 5'UTR 0.08 TCGA-20-0991-01 3 9874828 9874828 T A TTLL3 Missense_Mutation p.L675Q 0.41 tolerated(0.06) probably_damaging(0.987) TCGA-20-0991-01 4 113571627 113571627 G A LARP7 Silent p.R442R 0.15 TCGA-20-0991-01 4 114279142 114279142 C A ANK2 Missense_Mutation p.S3123Y 0.29 probably_damaging(0.921) TCGA-20-0991-01 4 121957405 121957405 C T NDNF 3'UTR 0.07 TCGA-20-0991-01 4 141889014 141889014 G A RNF150 Silent p.I166I 0.15 TCGA-20-0991-01 4 174219283 174219283 C T GALNT7 Missense_Mutation p.P328L 0.59 deleterious(0) probably_damaging(0.999) TCGA-20-0991-01 4 21950280 21950280 G A KCNIP4 5'UTR 0.16 TCGA-20-0991-01 4 6086641 6086641 C T JAKMIP1 Missense_Mutation p.E296K 0.13 deleterious(0.02) possibly_damaging(0.481) TCGA-20-0991-01 4 79832579 79832579 G T BMP2K Missense_Mutation p.D960Y 0.07 deleterious_low_confidence(0) unknown(0) TCGA-20-0991-01 5 131007463 131007463 G A FNIP1 Missense_Mutation p.P892S 0.11 tolerated(0.79) benign(0) TCGA-20-0991-01 5 132160484 132160484 A G SHROOM1 Missense_Mutation p.M355T 0.20 tolerated(0.18) benign(0.005) TCGA-20-0991-01 5 140250462 140250462 A G PCDHA11 Missense_Mutation p.K592E 0.11 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-20-0991-01 5 140557910 140557910 C T PCDHB8 Missense_Mutation p.H99Y 0.08 deleterious_low_confidence(0.03) benign(0.362) TCGA-20-0991-01 5 140711070 140711070 C A PCDHGA1 Silent p.A273A 0.39 TCGA-20-0991-01 5 140763768 140763768 G T PCDHGA7 Missense_Mutation p.R434S 0.40 deleterious_low_confidence(0.04) benign(0.006) TCGA-20-0991-01 5 146703561 146703561 G A STK32A Missense_Mutation p.E121K 0.09 tolerated(0.09) benign(0.002) TCGA-20-0991-01 5 150922494 150922494 G C FAT2 Missense_Mutation p.P2732A 0.16 benign(0.085) TCGA-20-0991-01 5 33989076 33989076 T C AMACR Intron 0.36 TCGA-20-0991-01 5 41870467 41870467 G A OXCT1 5'UTR 0.22 TCGA-20-0991-01 5 54457025 54457025 C T GPX8 Silent p.I136I 0.17 TCGA-20-0991-01 5 63510184 63510184 A G RNF180 Missense_Mutation p.E344G 0.27 deleterious(0.04) benign(0.054) TCGA-20-0991-01 5 66084575 66084575 C T MAST4 Missense_Mutation p.R199C 0.30 probably_damaging(0.977) TCGA-20-0991-01 5 89689835 89689835 A C CETN3 3'UTR 0.39 TCGA-20-0991-01 6 105406094 105406094 G A LIN28B Missense_Mutation p.G44E 0.29 deleterious(0) probably_damaging(1) TCGA-20-0991-01 6 105406107 105406107 G A LIN28B Missense_Mutation p.M48I 0.28 deleterious(0.01) probably_damaging(0.913) TCGA-20-0991-01 6 105406115 105406115 G A LIN28B Missense_Mutation p.R51Q 0.26 tolerated(0.05) possibly_damaging(0.7) TCGA-20-0991-01 6 116832984 116832984 C A FAM26E Missense_Mutation p.P42H 0.30 deleterious(0) probably_damaging(0.994) TCGA-20-0991-01 6 117864371 117864371 G A DCBLD1 Missense_Mutation p.R481K 0.06 tolerated(0.09) possibly_damaging(0.87) TCGA-20-0991-01 6 127797200 127797200 C T SOGA3 Silent p.E657E 0.12 TCGA-20-0991-01 6 128319867 128319867 C T PTPRK Missense_Mutation p.E893K 0.09 deleterious(0.01) probably_damaging(0.975) TCGA-20-0991-01 6 144086568 144086568 C T PHACTR2 Missense_Mutation p.H289Y 0.10 deleterious_low_confidence(0) benign(0.001) TCGA-20-0991-01 6 155565824 155565824 G A TIAM2 Missense_Mutation p.M1150I 0.06 deleterious(0) possibly_damaging(0.712) TCGA-20-0991-01 6 160103485 160103485 G A SOD2 3'UTR 0.09 TCGA-20-0991-01 6 26205148 26205148 G C HIST1H4E Missense_Mutation p.K92N 0.12 deleterious(0.03) possibly_damaging(0.781) TCGA-20-0991-01 6 31855630 31855630 A C EHMT2 Silent p.L618L 0.18 TCGA-20-0991-01 6 35480431 35480431 C T TULP1 Silent p.P28P 0.08 TCGA-20-0991-01 6 38142751 38142751 G A BTBD9 3'UTR 0.05 TCGA-20-0991-01 6 43412975 43412975 C T ABCC10 Missense_Mutation p.R985W 0.70 deleterious(0) probably_damaging(0.976) TCGA-20-0991-01 6 4954211 4954211 T C CDYL Missense_Mutation p.V519A 0.64 tolerated(0.5) benign(0.048) TCGA-20-0991-01 6 55266659 55266659 G A GFRAL 3'UTR 0.16 TCGA-20-0991-01 6 94120794 94120794 C T EPHA7 Missense_Mutation p.R86Q 0.05 tolerated(0.16) benign(0.041) TCGA-20-0991-01 7 100856128 100856128 C T PLOD3 Missense_Mutation p.G292R 0.54 tolerated(0.52) benign(0.019) TCGA-20-0991-01 7 103230148 103230148 C T RELN Missense_Mutation p.C1347Y 0.37 deleterious(0) possibly_damaging(0.798) TCGA-20-0991-01 7 103230149 103230149 A T RELN Missense_Mutation p.C1347S 0.38 deleterious(0) probably_damaging(0.956) TCGA-20-0991-01 7 135366327 135366327 A T SLC13A4 Missense_Mutation p.I622N 0.06 tolerated(0.11) benign(0.003) TCGA-20-0991-01 7 141759468 141785646 7:141759468-141785646 - MGAM large deletion p.X1540_splice 0.17 TCGA-20-0991-01 7 143079757 143079757 G A ZYX Silent p.K160K 0.05 TCGA-20-0991-01 7 143079761 143079761 G A ZYX Missense_Mutation p.D162N 0.04 tolerated(0.07) probably_damaging(0.992) TCGA-20-0991-01 7 1578821 1578821 C - MAFK 5'UTR 0.19 TCGA-20-0991-01 7 20197898 20197898 C T MACC1 Missense_Mutation p.V696I 0.17 tolerated(0.11) benign(0.024) TCGA-20-0991-01 7 20766699 20766699 G A ABCB5 Missense_Mutation p.V888M 0.55 deleterious(0.03) benign(0.167) TCGA-20-0991-01 7 72413722 72413722 T A POM121 Missense_Mutation p.F799I 0.31 deleterious(0) probably_damaging(0.991) TCGA-20-0991-01 7 73255498 73255498 G T WBSCR27 Missense_Mutation p.R52S 0.21 tolerated(0.6) benign(0.002) TCGA-20-0991-01 7 99631437 99631437 G A ZKSCAN1 Missense_Mutation p.E437K 0.58 deleterious(0.01) probably_damaging(0.996) TCGA-20-0991-01 8 100026027 100026027 C T VPS13B Missense_Mutation p.S4L 0.32 deleterious(0) possibly_damaging(0.637) TCGA-20-0991-01 8 104943609 104943609 T C RIMS2 Missense_Mutation p.L788P 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-20-0991-01 8 105361498 105361498 T C DCSTAMP Missense_Mutation p.W240R 0.31 tolerated(0.53) benign(0.002) TCGA-20-0991-01 8 105361499 105361499 G T DCSTAMP Missense_Mutation p.W240L 0.32 tolerated(0.32) benign(0.001) TCGA-20-0991-01 8 119122833 119122833 C T EXT1 Silent p.A151A 0.10 TCGA-20-0991-01 8 125989760 125989760 G C ZNF572 Missense_Mutation p.C417S 0.26 deleterious(0) probably_damaging(0.976) TCGA-20-0991-01 8 139890117 139890117 G A COL22A1 Silent p.G178G 0.37 TCGA-20-0991-01 8 142227244 142227244 G A SLC45A4 Silent p.V507V 0.21 TCGA-20-0991-01 8 143570761 143570761 C T BAI1 Missense_Mutation p.R865C 0.18 tolerated(0.06) possibly_damaging(0.898) TCGA-20-0991-01 8 42026674 42026674 C T AP3M2 3'UTR 0.19 TCGA-20-0991-01 8 77764726 77764726 G A ZFHX4 Missense_Mutation p.E1857K 0.06 possibly_damaging(0.486) TCGA-20-0991-01 9 103060324 103060324 G A INVS Intron 0.15 TCGA-20-0991-01 9 104170635 104170635 G A ZNF189 Silent p.Q195Q 0.10 TCGA-20-0991-01 9 107332186 107332186 A C OR13C8 Silent p.T246T 0.23 TCGA-20-0991-01 9 109686674 109686674 G A ZNF462 Missense_Mutation p.V161I 0.21 benign(0.097) TCGA-20-0991-01 9 113228215 113228215 C A SVEP1 Silent p.R1084R 0.06 TCGA-20-0991-01 9 114538164 114538164 C T C9orf84 Missense_Mutation p.E53K 0.11 tolerated(0.08) possibly_damaging(0.621) TCGA-20-0991-01 9 116971772 116971772 C T COL27A1 Intron 0.07 TCGA-20-0991-01 9 130206972 130206972 G A ZNF79 Silent p.K331K 0.10 TCGA-20-0991-01 9 136282753 136282753 T G REXO4 Missense_Mutation p.K71T 0.22 deleterious(0) probably_damaging(0.963) TCGA-20-0991-01 9 139360479 139360479 C T SEC16A Missense_Mutation p.S1413N 0.29 tolerated(0.44) benign(0.011) TCGA-20-0991-01 9 19058102 19058102 T A HAUS6 Missense_Mutation p.H888L 0.25 tolerated(0.69) benign(0.005) TCGA-20-0991-01 9 37492704 37492704 A C POLR1E Silent p.R132R 0.27 TCGA-20-0991-01 9 37492705 37492705 G A POLR1E Missense_Mutation p.R132K 0.27 tolerated(0.1) benign(0.267) TCGA-20-0991-01 9 5969171 5969171 G A KIAA2026 Missense_Mutation p.R354C 0.16 deleterious(0.04) probably_damaging(0.996) TCGA-20-0991-01 9 75435853 75435853 A G TMC1 Missense_Mutation p.N620S 0.33 deleterious(0) possibly_damaging(0.789) TCGA-20-0991-01 9 79326141 79326141 T C PRUNE2 Missense_Mutation p.K350R 0.20 deleterious(0) probably_damaging(1) TCGA-20-0991-01 9 95768341 95768341 A G FGD3 Missense_Mutation p.K239R 0.26 deleterious(0) probably_damaging(0.936) TCGA-20-0991-01 X 100117188 100117188 C A NOX1 Missense_Mutation p.R259L 0.10 tolerated(0.7) benign(0.001) TCGA-20-0991-01 X 105011215 105011215 G A IL1RAPL2 Missense_Mutation p.S541N 0.07 deleterious(0) probably_damaging(0.985) TCGA-20-0991-01 X 107434729 107434729 T A COL4A6 Silent p.P406P 0.05 TCGA-20-0991-01 X 117526631 117526631 C T WDR44 Silent p.L75L 0.08 TCGA-20-0991-01 X 132160507 132160507 G A USP26 Missense_Mutation p.S581F 0.38 tolerated(0.15) benign(0.286) TCGA-20-0991-01 X 153222478 153222478 A T HCFC1 Missense_Mutation p.I796N 0.25 deleterious(0) probably_damaging(0.989) TCGA-20-0991-01 X 34149784 34149784 G T FAM47A Silent p.P204P 0.27 TCGA-20-0991-01 X 50052251 50052251 C T CCNB3 Missense_Mutation p.S361F 0.13 tolerated(0.08) benign(0.005) TCGA-20-0991-01 X 50052252 50052252 C T CCNB3 Silent p.S361S 0.13 TCGA-20-0991-01 X 50053851 50053851 G A CCNB3 Silent p.E894E 0.08 TCGA-20-0991-01 X 54800526 54800526 G A ITIH6 Silent p.T297T 0.07 TCGA-20-0991-01 X 54800538 54800538 G A ITIH6 Silent p.S293S 0.08 TCGA-20-0991-01 X 66766107 66766107 A G AR Silent p.G373G 0.34 TCGA-20-0991-01 X 69647174 69647174 T G GDPD2 Missense_Mutation p.V266G 0.72 deleterious(0) probably_damaging(0.94) TCGA-23-1110-01 10 128797685 128797685 C T DOCK1 Nonsense_Mutation p.R279* 0.98 TCGA-23-1110-01 10 17145125 17145125 T G CUBN Missense_Mutation p.K510T 0.13 deleterious(0) probably_damaging(1) TCGA-23-1110-01 10 436258 436258 G C DIP2C Silent p.P480P 0.31 TCGA-23-1110-01 10 64136256 64136256 T C ZNF365 Missense_Mutation p.Y102H 0.27 tolerated_low_confidence(0.48) benign(0.161) TCGA-23-1110-01 10 64944406 64944406 A T JMJD1C Missense_Mutation p.V2308E 0.20 deleterious(0) probably_damaging(0.999) TCGA-23-1110-01 10 70066604 70066604 T C PBLD 5'UTR 0.20 TCGA-23-1110-01 10 75053292 75053292 T A TTC18 Intron 0.18 TCGA-23-1110-01 10 75526260 75526260 T C SEC24C Missense_Mutation p.F587S 0.05 deleterious(0) probably_damaging(0.958) TCGA-23-1110-01 11 102207518 102207518 C G BIRC3 Missense_Mutation p.T536R 0.24 deleterious(0.01) possibly_damaging(0.703) TCGA-23-1110-01 11 123901230 123901230 C A OR10G8 Missense_Mutation p.L301M 0.32 tolerated(0.11) possibly_damaging(0.779) TCGA-23-1110-01 11 18739641 18739641 C G IGSF22 Splice_Site p.X271_splice 0.45 TCGA-23-1110-01 11 59132241 59132241 A T OR5AN1 Missense_Mutation p.I104F 0.24 tolerated(1) benign(0.001) TCGA-23-1110-01 11 61607803 61607803 C G FADS2 Intron 0.16 TCGA-23-1110-01 11 62286515 62286515 G C AHNAK Missense_Mutation p.S5125C 0.22 probably_damaging(0.987) TCGA-23-1110-01 11 63057878 63057878 T A SLC22A10 Missense_Mutation p.S81T 0.71 deleterious(0.04) benign(0.212) TCGA-23-1110-01 12 11138745 11138745 C A TAS2R50 Missense_Mutation p.A239S 0.04 tolerated(0.05) benign(0.417) TCGA-23-1110-01 12 5153943 5153943 G A KCNA5 Missense_Mutation p.M210I 0.30 tolerated(0.54) benign(0.007) TCGA-23-1110-01 12 53849127 53849137 GCAGGAAGTTG - PCBP2 Splice_Site p.X24_splice 0.27 TCGA-23-1110-01 12 7249275 7249275 C T C1RL Silent p.S392S 0.04 TCGA-23-1110-01 12 88898957 88898957 T G KITLG 3'UTR 0.82 TCGA-23-1110-01 13 20041412 20041412 A G TPTE2 Silent p.D155D 0.33 TCGA-23-1110-01 13 52509059 52509059 G A ATP7B Missense_Mutation p.R1411W 0.97 tolerated(0.05) benign(0.028) TCGA-23-1110-01 13 58207797 58207797 C T PCDH17 Silent p.L373L 0.09 TCGA-23-1110-01 13 88330418 88330418 A G SLITRK5 Silent p.V925V 0.47 TCGA-23-1110-01 13 99043104 99043104 A T FARP1 Missense_Mutation p.E353V 0.14 tolerated(0.06) possibly_damaging(0.728) TCGA-23-1110-01 14 19563418 19563418 T A POTEG Missense_Mutation p.L311H 0.50 tolerated(0.14) possibly_damaging(0.684) TCGA-23-1110-01 14 20585626 20585626 G A OR4K17 Missense_Mutation p.G21S 0.04 tolerated_low_confidence(0.52) benign(0.012) TCGA-23-1110-01 14 24707820 24707820 G C GMPR2 Missense_Mutation p.V313L 0.21 tolerated(0.24) benign(0.009) TCGA-23-1110-01 14 64518439 64518439 T C SYNE2 Missense_Mutation p.L2603P 0.49 probably_damaging(1) TCGA-23-1110-01 14 70171360 70171360 C A KIAA0247 Missense_Mutation p.S120Y 0.30 deleterious(0) probably_damaging(0.954) TCGA-23-1110-01 15 43500502 43500502 A T EPB42 Missense_Mutation p.M364K 0.38 deleterious(0) probably_damaging(0.96) TCGA-23-1110-01 15 45442897 45442897 C T DUOX1 Silent p.I962I 0.36 TCGA-23-1110-01 15 86822963 86822963 G C AGBL1 Missense_Mutation p.E677D 0.45 tolerated(1) benign(0.022) TCGA-23-1110-01 15 90125915 90125915 A T TICRR Splice_Site p.X219_splice 0.04 TCGA-23-1110-01 16 1479277 1479277 C A C16orf91 Silent p.G23G 0.35 TCGA-23-1110-01 16 19056666 19056666 T A TMC7 Missense_Mutation p.W487R 0.39 deleterious(0) probably_damaging(0.996) TCGA-23-1110-01 16 28922431 28922431 G A RABEP2 Missense_Mutation p.R322W 0.11 deleterious(0) benign(0.026) TCGA-23-1110-01 16 48230203 48230203 C A ABCC11 Nonsense_Mutation p.E782* 0.37 TCGA-23-1110-01 16 58283935 58283935 C T CCDC113 Missense_Mutation p.S6F 0.23 deleterious(0) benign(0.252) TCGA-23-1110-01 16 66947454 66947454 T A CDH16 Missense_Mutation p.E281D 0.55 tolerated(1) benign(0.002) TCGA-23-1110-01 16 830551 830551 A G MSLNL Silent p.T150T 0.10 TCGA-23-1110-01 16 90126903 90126903 T C PRDM7 Missense_Mutation p.E360G 0.29 deleterious(0) probably_damaging(0.986) TCGA-23-1110-01 17 18054759 18054759 T A MYO15A Missense_Mutation p.F2569I 0.50 unknown(0) TCGA-23-1110-01 17 39633357 39633357 T G KRT35 Missense_Mutation p.N440T 0.42 tolerated(0.91) benign(0) TCGA-23-1110-01 17 49272709 49272709 C A MBTD1 Missense_Mutation p.G413V 0.25 deleterious(0) probably_damaging(0.997) TCGA-23-1110-01 17 57262467 57262483 TCCTGGAACTTCAATTT - PRR11 Frame_Shift_Del p.W62* 0.28 TCGA-23-1110-01 17 62964243 62964243 C A AMZ2P1 RNA 0.58 TCGA-23-1110-01 17 7578403 7578403 C T TP53 Missense_Mutation p.C176Y 0.95 deleterious(0) probably_damaging(0.995) TCGA-23-1110-01 18 63548168 63548168 T A CDH7 3'UTR 0.07 TCGA-23-1110-01 19 10370467 10370473 CGGCCAC - MRPL4 Frame_Shift_Del p.A306Rfs*11 0.29 TCGA-23-1110-01 19 1360296 1360296 C T MUM1 Missense_Mutation p.H127Y 0.08 deleterious(0.04) benign(0.024) TCGA-23-1110-01 19 17366269 17366269 C T USHBP1 Silent p.Q539Q 0.26 TCGA-23-1110-01 19 20736585 20736585 G A ZNF737 Silent p.C20C 0.04 TCGA-23-1110-01 19 33370060 33370060 C T CEP89 3'UTR 0.30 TCGA-23-1110-01 19 40030750 40030750 C T EID2 5'UTR 0.15 TCGA-23-1110-01 19 40901639 40901639 C T PRX Missense_Mutation p.A874T 0.15 tolerated(0.14) possibly_damaging(0.695) TCGA-23-1110-01 19 42839282 42839282 G A MEGF8 Silent p.V218V 0.17 TCGA-23-1110-01 19 44791915 44791915 A T ZNF235 Missense_Mutation p.L558H 0.28 deleterious(0) probably_damaging(1) TCGA-23-1110-01 19 46215245 46215245 G A FBXO46 Silent p.F503F 0.47 TCGA-23-1110-01 19 46522497 46522497 C T PGLYRP1 Silent p.%3D 0.36 TCGA-23-1110-01 19 49657294 49657294 T C HRC Missense_Mutation p.S401G 0.29 tolerated(0.06) benign(0.021) TCGA-23-1110-01 19 54445451 54445451 C T CACNG7 Silent p.S244S 0.35 TCGA-23-1110-01 19 54803581 54803581 G T LILRA3 Silent p.G81G 0.32 TCGA-23-1110-01 19 55220413 55220413 C T AC098784.2 3'Flank 0.19 TCGA-23-1110-01 19 55556577 55556577 G C RDH13 Nonsense_Mutation p.Y287* 0.24 TCGA-23-1110-01 19 58578735 58578735 G A ZNF135 Missense_Mutation p.E319K 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-23-1110-01 1 107979317 107979317 A C NTNG1 Missense_Mutation p.H429P 0.43 tolerated(0.06) benign(0) TCGA-23-1110-01 1 12819361 12819361 G C C1orf158 Missense_Mutation p.R115P 0.19 deleterious(0) probably_damaging(0.996) TCGA-23-1110-01 1 142713649 142713649 T C RP11-417J8.6 RNA 0.11 TCGA-23-1110-01 1 152009450 152009450 C T S100A11 5'UTR 0.36 TCGA-23-1110-01 1 152484108 152484108 C T LCE5A Missense_Mutation p.P33L 0.13 deleterious_low_confidence(0) unknown(0) TCGA-23-1110-01 1 155791321 155791321 G C GON4L Missense_Mutation p.H303D 0.27 deleterious(0) benign(0.402) TCGA-23-1110-01 1 159409906 159409906 A T OR10J1 Missense_Mutation p.I120F 0.29 deleterious(0.01) probably_damaging(0.984) TCGA-23-1110-01 1 165513563 165513563 G T LRRC52 Silent p.G10G 0.30 TCGA-23-1110-01 1 172501734 172501734 G C SUCO 5'Flank 0.17 TCGA-23-1110-01 1 201061156 201061156 T G CACNA1S Missense_Mutation p.K162T 0.19 deleterious(0.01) probably_damaging(1) TCGA-23-1110-01 1 223284970 223284970 G T TLR5 Silent p.T468T 0.31 TCGA-23-1110-01 1 226019478 226019478 A T EPHX1 Splice_Site p.X62_splice 0.22 TCGA-23-1110-01 1 45120665 45120665 G T TMEM53 Missense_Mutation p.R134S 0.56 tolerated(1) benign(0.008) TCGA-23-1110-01 1 84864267 84864267 C A DNASE2B Missense_Mutation p.A7E 0.47 tolerated(0.07) benign(0.178) TCGA-23-1110-01 20 19870273 19870273 G T RIN2 Missense_Mutation p.G59C 0.19 tolerated_low_confidence(0.25) benign(0.003) TCGA-23-1110-01 20 22563750 22563750 T G FOXA2 Missense_Mutation p.N44H 0.44 deleterious(0.02) probably_damaging(0.942) TCGA-23-1110-01 20 2622020 2622020 C T TMC2 3'UTR 0.93 TCGA-23-1110-01 20 46292356 46292356 G T SULF2 Missense_Mutation p.Q690K 0.05 tolerated(0.25) benign(0.001) TCGA-23-1110-01 21 11014994 11014994 G C TPTE RNA 0.18 TCGA-23-1110-01 21 31852454 31852454 G A KRTAP19-1 Silent p.G61G 0.23 TCGA-23-1110-01 21 44329129 44329129 T G NDUFV3 Nonstop_Mutation p.*474Gext*5 0.28 TCGA-23-1110-01 22 16279257 16279257 C G POTEH Missense_Mutation p.Q322H 0.05 deleterious(0.05) probably_damaging(0.986) TCGA-23-1110-01 22 50217397 50217397 A C BRD1 Missense_Mutation p.M190R 0.19 deleterious(0) probably_damaging(0.968) TCGA-23-1110-01 22 50217398 50217398 T C BRD1 Missense_Mutation p.M190V 0.19 tolerated(0.34) benign(0.241) TCGA-23-1110-01 2 11944604 11944604 A G LPIN1 Missense_Mutation p.Q739R 0.67 deleterious(0) probably_damaging(0.945) TCGA-23-1110-01 2 16082160 16082160 C G MYCN 5'UTR 0.26 TCGA-23-1110-01 2 179427935 179427935 A G TTN Missense_Mutation p.Y27642H 0.27 TCGA-23-1110-01 2 179429763 179429763 A T TTN Silent p.I27032I 0.03 TCGA-23-1110-01 2 182402892 182402892 T C CERKL 3'Flank 0.39 TCGA-23-1110-01 2 201438387 201438387 G T SGOL2 Missense_Mutation p.K1106N 0.23 tolerated(0.3) benign(0.446) TCGA-23-1110-01 2 203684351 203684351 T A ICA1L Intron 0.35 TCGA-23-1110-01 2 218678419 218678419 T C TNS1 Missense_Mutation p.Q1513R 0.29 deleterious(0.02) probably_damaging(0.945) TCGA-23-1110-01 2 218925022 218925022 A G CXCR2P1 RNA 0.28 TCGA-23-1110-01 2 234526586 234526586 C G UGT1A8 Nonsense_Mutation p.S78* 0.25 TCGA-23-1110-01 2 87017544 87017544 C T CD8A Missense_Mutation p.D104N 0.29 tolerated(0.73) benign(0.003) TCGA-23-1110-01 3 108822695 108822695 C A MORC1 Splice_Site p.X75_splice 0.26 TCGA-23-1110-01 3 113528311 113528311 C A ATP6V1A 3'UTR 0.07 TCGA-23-1110-01 3 133654647 133654647 G C SLCO2A1 Silent p.A595A 0.22 TCGA-23-1110-01 3 138762640 138762640 C G PRR23C 3'UTR 0.36 TCGA-23-1110-01 3 152553610 152553610 G A P2RY1 Silent p.T13T 0.17 TCGA-23-1110-01 3 16358730 16358730 G A RFTN1 Nonsense_Mutation p.R448* 0.91 TCGA-23-1110-01 3 179066743 179066743 T A MFN1 Missense_Mutation p.F35Y 0.12 tolerated(0.05) possibly_damaging(0.864) TCGA-23-1110-01 3 184910746 184910746 C G EHHADH Silent p.V480V 0.15 TCGA-23-1110-01 3 186974476 186974476 C A MASP1 Silent p.V240V 0.21 TCGA-23-1110-01 3 38941406 38941406 T A SCN11A Silent p.P667P 0.43 TCGA-23-1110-01 3 38941407 38941407 G T SCN11A Missense_Mutation p.P667Q 0.43 tolerated(0.31) benign(0.011) TCGA-23-1110-01 3 39307351 39307351 G C CX3CR1 Missense_Mutation p.T249R 0.06 deleterious(0.02) probably_damaging(1) TCGA-23-1110-01 3 46487931 46487931 C G LTF Missense_Mutation p.G453R 0.48 deleterious(0) possibly_damaging(0.865) TCGA-23-1110-01 3 52255227 52255227 T A TLR9 3'UTR 0.31 TCGA-23-1110-01 3 98001793 98001793 G A OR5H2 Missense_Mutation p.G21E 0.14 deleterious(0.01) probably_damaging(0.932) TCGA-23-1110-01 4 103870433 103870433 A G SLC9B1 Silent p.P121P 0.28 TCGA-23-1110-01 4 107846995 107846995 G C DKK2 Missense_Mutation p.R112G 0.46 deleterious(0) probably_damaging(0.995) TCGA-23-1110-01 4 123533830 123533830 G T IL21 3'UTR 0.38 TCGA-23-1110-01 4 13603693 13603693 T C BOD1L1 Missense_Mutation p.K1611E 0.28 probably_damaging(0.998) TCGA-23-1110-01 4 155505781 155505781 A T FGA Missense_Mutation p.L699Q 0.37 deleterious(0) probably_damaging(0.975) TCGA-23-1110-01 4 162402181 162402181 T A FSTL5 Missense_Mutation p.K533N 0.34 deleterious(0.01) probably_damaging(0.977) TCGA-23-1110-01 4 25334974 25334974 A C ZCCHC4 Missense_Mutation p.K167Q 0.22 deleterious(0.02) possibly_damaging(0.788) TCGA-23-1110-01 4 36230420 36230420 C A ARAP2 Missense_Mutation p.G230V 0.46 tolerated_low_confidence(0.25) benign(0.006) TCGA-23-1110-01 4 36230421 36230421 C T ARAP2 Missense_Mutation p.G230R 0.46 tolerated_low_confidence(0.33) benign(0.009) TCGA-23-1110-01 4 36230974 36230974 C T ARAP2 Silent p.L45L 0.49 TCGA-23-1110-01 4 77276468 77276483 GCAACCCACCTTATTT - CCDC158 Splice_Site p.X760_splice 0.36 TCGA-23-1110-01 4 99064327 99064327 G C STPG2 5'UTR 0.42 TCGA-23-1110-01 5 135186175 135186175 G T SLC25A48 Missense_Mutation p.R51M 0.30 deleterious(0) possibly_damaging(0.882) TCGA-23-1110-01 5 137492860 137492860 A T BRD8 Intron 0.04 TCGA-23-1110-01 5 137501781 137501781 G T BRD8 Missense_Mutation p.N338K 0.06 tolerated(0.4) benign(0.01) TCGA-23-1110-01 5 169145742 169145742 G A DOCK2 Silent p.K738K 0.04 TCGA-23-1110-01 5 173534461 173534461 G A NSG2 Missense_Mutation p.A157T 0.97 tolerated(0.4) benign(0.086) TCGA-23-1110-01 5 176520496 176520496 C G FGFR4 Silent p.A447A 0.56 TCGA-23-1110-01 5 33445499 33445499 G A TARS Missense_Mutation p.G43S 0.35 tolerated(0.19) probably_damaging(0.991) TCGA-23-1110-01 5 40964847 40964847 A C C7 Missense_Mutation p.E585A 0.50 tolerated(0.72) benign(0.023) TCGA-23-1110-01 5 65118757 65118757 G T NLN 3'UTR 0.24 TCGA-23-1110-01 5 73931122 73931122 T G ENC1 Missense_Mutation p.T397P 0.46 tolerated(0.16) probably_damaging(0.995) TCGA-23-1110-01 6 105573326 105573340 GTTTGGCCCTTTTTC A BVES Frame_Shift_Del p.L155Ffs*7 0.13 TCGA-23-1110-01 6 128298168 128298168 G T PTPRK Missense_Mutation p.T1254K 0.17 deleterious(0) probably_damaging(0.993) TCGA-23-1110-01 6 144772594 144772594 A G UTRN Missense_Mutation p.M721V 1.00 tolerated(0.28) benign(0.002) TCGA-23-1110-01 6 30121774 30121774 C T TRIM10 Missense_Mutation p.R473Q 0.15 tolerated(0.28) probably_damaging(0.999) TCGA-23-1110-01 6 30890956 30890956 G T VARS2 Missense_Mutation p.R784L 0.37 deleterious(0) probably_damaging(0.952) TCGA-23-1110-01 6 41655674 41655674 C G TFEB Silent p.A214A 0.27 TCGA-23-1110-01 6 41739143 41739143 T G FRS3 Silent p.P231P 0.46 TCGA-23-1110-01 6 70071237 70071237 C A BAI3 Missense_Mutation p.Q1358K 0.25 tolerated(0.19) benign(0.054) TCGA-23-1110-01 6 7240715 7240715 A G RREB1 Missense_Mutation p.T1285A 0.32 deleterious(0.02) benign(0.026) TCGA-23-1110-01 6 73110374 73110374 A G RIMS1 Silent p.S1679S 0.20 TCGA-23-1110-01 7 100686648 100686648 C A MUC17 Missense_Mutation p.S3984Y 0.25 benign(0.009) TCGA-23-1110-01 7 1131801 1131801 T A GPER1 Missense_Mutation p.F146Y 1.00 deleterious(0) probably_damaging(1) TCGA-23-1110-01 7 127334971 127334971 G T SND1 Silent p.G106G 0.03 TCGA-23-1110-01 7 139138383 139138383 C T KLRG2 Missense_Mutation p.A394T 0.07 tolerated(0.26) benign(0.072) TCGA-23-1110-01 7 140051320 140051320 T C SLC37A3 Intron 0.55 TCGA-23-1110-01 7 149129558 149129558 C A ZNF777 Missense_Mutation p.C602F 0.33 tolerated(0.69) benign(0.003) TCGA-23-1110-01 7 151878644 151878644 G C KMT2C Missense_Mutation p.P2101A 0.63 possibly_damaging(0.529) TCGA-23-1110-01 7 40127843 40127843 G T CDK13 Missense_Mutation p.G1050C 0.23 deleterious(0) probably_damaging(1) TCGA-23-1110-01 7 98445637 98445637 A T TMEM130 3'UTR 0.14 TCGA-23-1110-01 8 133637631 133637631 G T LRRC6 Missense_Mutation p.D241E 0.19 tolerated(0.88) benign(0.002) TCGA-23-1110-01 8 2088796 2088796 C A MYOM2 Missense_Mutation p.D1317E 0.26 tolerated(0.17) probably_damaging(0.966) TCGA-23-1110-01 8 27303406 27303406 G T PTK2B Silent p.R770R 0.35 TCGA-23-1110-01 8 36692362 36692362 C T KCNU1 Missense_Mutation p.A424V 0.20 tolerated(0.1) benign(0.022) TCGA-23-1110-01 8 37697734 37697734 C G GPR124 Silent p.P869P 0.22 TCGA-23-1110-01 8 56723473 56723473 C G TGS1 Missense_Mutation p.A726G 0.14 tolerated(0.05) benign(0.011) TCGA-23-1110-01 8 57025501 57025501 T A MOS Nonstop_Mutation p.*347Cext*? 0.53 TCGA-23-1110-01 8 86245847 86245847 A - CA1 Frame_Shift_Del p.H120Tfs*2 0.31 TCGA-23-1110-01 9 101530427 101530427 G C ANKS6 Missense_Mutation p.A693G 0.47 tolerated(0.13) benign(0.333) TCGA-23-1110-01 9 127316808 127316808 T A NR6A1 Missense_Mutation p.I62F 0.35 deleterious(0) probably_damaging(0.997) TCGA-23-1110-01 9 128434612 128434612 C G MAPKAP1 Missense_Mutation p.R81T 0.49 tolerated(0.06) possibly_damaging(0.842) TCGA-23-1110-01 9 26988665 26988665 A T IFT74 Splice_Site p.X156_splice 0.08 TCGA-23-1110-01 9 32487984 32487984 G C DDX58 Missense_Mutation p.L391V 0.35 deleterious(0) possibly_damaging(0.627) TCGA-23-1110-01 9 33076580 33076580 C T SMU1 Splice_Site p.X9_splice 0.30 TCGA-23-1110-01 9 3330481 3330481 C T RFX3 Missense_Mutation p.M84I 0.12 tolerated(0.24) benign(0.01) TCGA-23-1110-01 X 12735839 12735839 C A FRMPD4 Missense_Mutation p.P965Q 0.46 tolerated_low_confidence(0.07) benign(0.239) TCGA-23-1110-01 X 14936873 14936873 C A MOSPD2 Nonsense_Mutation p.S463* 0.08 TCGA-23-1110-01 X 152159720 152159720 T C PNMA5 Silent p.Q141Q 0.55 TCGA-23-1110-01 X 2407538 2407538 G A ZBED1 Missense_Mutation p.A408V 0.62 deleterious(0.01) benign(0.33) TCGA-23-1110-01 X 3241097 3241097 G C MXRA5 Missense_Mutation p.P877A 0.48 tolerated(0.22) benign(0.019) TCGA-23-1110-01 X 51151349 51151349 C T CXorf67 Missense_Mutation p.T494I 0.27 tolerated(0.59) probably_damaging(0.991) TCGA-23-1110-01 X 55042153 55042153 C T ALAS2 Silent p.E342E 0.28 TCGA-23-1110-01 X 73070908 73070908 T A XIST RNA 0.33 TCGA-23-1110-01 X 85236776 85236776 A T CHM Missense_Mutation p.F52I 0.53 deleterious(0) probably_damaging(0.999) TCGA-23-2641-01 10 111624957 111624957 G A XPNPEP1 Silent p.I662I 0.15 TCGA-23-2641-01 10 124266332 124266352 GCGAGGCGGCAAAGAGCTGGG - HTRA1 In_Frame_Del p.R302_G308del 0.86 TCGA-23-2641-01 10 134008405 134008405 C T DPYSL4 Missense_Mutation p.R124W 0.50 deleterious(0) probably_damaging(0.99) TCGA-23-2641-01 10 32197759 32197759 T G ARHGAP12 Missense_Mutation p.K9Q 0.49 tolerated_low_confidence(0.05) benign(0.342) TCGA-23-2641-01 10 86130904 86130904 T C CCSER2 Silent p.N32N 0.08 TCGA-23-2641-01 10 88441363 88441363 G C LDB3 Silent p.P164P 0.40 TCGA-23-2641-01 11 20940857 20940857 C A NELL1 Missense_Mutation p.L246I 0.47 tolerated(0.87) benign(0.047) TCGA-23-2641-01 11 22261148 22261148 C T ANO5 Missense_Mutation p.P266S 0.43 tolerated(0.8) benign(0.424) TCGA-23-2641-01 11 35327661 35327661 G C SLC1A2 Missense_Mutation p.I230M 0.42 tolerated(0.22) benign(0.044) TCGA-23-2641-01 11 51411697 51411697 G A OR4A5 Silent p.A233A 0.43 TCGA-23-2641-01 11 5602421 5602421 G T OR52B6 Missense_Mutation p.L105F 0.75 tolerated(1) benign(0) TCGA-23-2641-01 11 6023857 6023857 G C OR56A4 Silent p.A174A 0.80 TCGA-23-2641-01 11 64622936 64622936 G C EHD1 Missense_Mutation p.S313C 0.11 tolerated(0.09) benign(0.195) TCGA-23-2641-01 11 65172367 65172367 C T FRMD8 Silent p.C368C 0.39 TCGA-23-2641-01 11 67821219 67821219 A C CHKA 3'UTR 0.29 TCGA-23-2641-01 11 68343468 68343468 C G PPP6R3 Missense_Mutation p.T501R 0.37 tolerated(0.14) benign(0.088) TCGA-23-2641-01 11 70194497 70194497 G A PPFIA1 Missense_Mutation p.E712K 0.08 tolerated(0.09) possibly_damaging(0.693) TCGA-23-2641-01 11 89224418 89224418 G T NOX4 5'UTR 0.44 TCGA-23-2641-01 12 15134399 15134399 G - PDE6H Frame_Shift_Del p.I82Lfs*73 0.30 TCGA-23-2641-01 12 22012569 22012569 C A ABCC9 Missense_Mutation p.R819I 0.44 deleterious(0) probably_damaging(0.999) TCGA-23-2641-01 12 53671331 53671331 T G ESPL1 Missense_Mutation p.D721E 0.31 tolerated(0.06) benign(0.033) TCGA-23-2641-01 12 55846843 55846843 G A OR6C2 Silent p.L282L 0.46 TCGA-23-2641-01 12 56625229 56625229 C A SLC39A5 Silent p.G57G 0.03 TCGA-23-2641-01 12 57603947 57603947 C T LRP1 Missense_Mutation p.P4192L 0.37 benign(0.424) TCGA-23-2641-01 12 57870186 57870186 G A ARHGAP9 Silent p.F359F 0.53 TCGA-23-2641-01 13 50590107 50590107 C T KCNRG Nonsense_Mutation p.Q160* 0.62 TCGA-23-2641-01 14 102449774 102449774 T G DYNC1H1 Missense_Mutation p.L430R 0.48 benign(0.248) TCGA-23-2641-01 14 23395460 23395460 C T PRMT5 Missense_Mutation p.R220H 0.40 deleterious(0) probably_damaging(0.989) TCGA-23-2641-01 14 23815819 23815819 G T SLC22A17 3'UTR 0.60 TCGA-23-2641-01 14 45645735 45645735 T C FANCM Missense_Mutation p.Y1260H 0.56 tolerated(0.52) benign(0.081) TCGA-23-2641-01 14 57947439 57947439 C G C14orf105 Missense_Mutation p.E177Q 0.06 deleterious(0.01) benign(0.269) TCGA-23-2641-01 14 93649846 93649846 T C MOAP1 Missense_Mutation p.R248G 0.05 deleterious(0.05) benign(0.18) TCGA-23-2641-01 15 23811074 23811074 C A MKRN3 Missense_Mutation p.P49T 0.84 tolerated(0.37) benign(0.002) TCGA-23-2641-01 15 73615062 73615062 A C HCN4 Silent p.G1124G 0.34 TCGA-23-2641-01 16 15850216 15850216 G A MYH11 Silent p.I584I 0.37 TCGA-23-2641-01 16 31388219 31388219 T A ITGAX Missense_Mutation p.F870I 0.48 deleterious(0.02) benign(0.408) TCGA-23-2641-01 16 86601261 86601261 C A FOXC2 Missense_Mutation p.P107H 0.82 deleterious(0) probably_damaging(1) TCGA-23-2641-01 17 34233791 34233791 T G AC015849.16 RNA 0.08 TCGA-23-2641-01 17 35300290 35300290 G T LHX1 Silent p.L361L 0.95 TCGA-23-2641-01 17 41245302 41245302 T - BRCA1 Frame_Shift_Del p.D749Vfs*4 0.47 TCGA-23-2641-01 17 43516885 43516885 T A PLEKHM1 Missense_Mutation p.H1006L 0.84 tolerated(0.3) benign(0.424) TCGA-23-2641-01 17 65026879 65026879 G T CACNG4 Missense_Mutation p.R248M 0.87 deleterious(0.02) possibly_damaging(0.678) TCGA-23-2641-01 17 7578370 7578370 C A TP53 Splice_Site p.X187_splice 0.89 TCGA-23-2641-01 17 7836551 7836551 G A CNTROB Missense_Mutation p.A52T 0.79 deleterious(0) probably_damaging(0.974) TCGA-23-2641-01 19 15198798 15198798 G T OR1I1 Missense_Mutation p.V308L 0.37 tolerated(0.19) benign(0.057) TCGA-23-2641-01 19 15734012 15734012 C A CYP4F8 RNA 0.44 TCGA-23-2641-01 19 16799174 16799174 G T TMEM38A Missense_Mutation p.A298S 0.36 tolerated(0.22) benign(0.242) TCGA-23-2641-01 19 35613964 35613964 G A FXYD3 Intron 0.32 TCGA-23-2641-01 19 38956800 38956800 G C RYR1 Missense_Mutation p.Q980H 0.64 possibly_damaging(0.874) TCGA-23-2641-01 19 51323277 51323277 C T KLK1 Missense_Mutation p.D171N 0.04 tolerated(0.16) benign(0.038) TCGA-23-2641-01 19 51630492 51630492 C T SIGLEC9 Silent p.F318F 0.12 TCGA-23-2641-01 19 51770626 51770626 G C SIGLECL1 Splice_Site p.X137_splice 0.13 TCGA-23-2641-01 19 54313661 54313761 19:54313661-54313761 - NLRP12 large deletion p.Q386Gfs*58 0.30 TCGA-23-2641-01 1 12033052 12033052 G C PLOD1 Missense_Mutation p.E676Q 0.48 tolerated(0.52) benign(0.145) TCGA-23-2641-01 1 120468135 120468135 C T NOTCH2 Missense_Mutation p.R1435Q 0.43 deleterious(0.03) possibly_damaging(0.536) TCGA-23-2641-01 1 156622640 156622640 C A BCAN Missense_Mutation p.T633N 0.06 tolerated(0.23) probably_damaging(0.997) TCGA-23-2641-01 1 167095721 167095721 G C DUSP27 Silent p.L451L 0.45 TCGA-23-2641-01 1 183087281 183087281 A G LAMC1 Missense_Mutation p.S664G 0.35 tolerated(0.62) benign(0.287) TCGA-23-2641-01 1 186008089 186008089 A G HMCN1 Missense_Mutation p.I1994V 0.39 probably_damaging(0.941) TCGA-23-2641-01 1 225591064 225591064 C T LBR Missense_Mutation p.V597M 0.05 tolerated(0.07) benign(0.342) TCGA-23-2641-01 1 247769215 247769215 A C OR2G3 Missense_Mutation p.T110P 0.61 deleterious(0) possibly_damaging(0.905) TCGA-23-2641-01 1 27720935 27720935 G C GPR3 Missense_Mutation p.Q211H 0.46 tolerated(0.28) benign(0.02) TCGA-23-2641-01 20 32856961 32856961 C G ASIP Missense_Mutation p.S129R 0.57 tolerated(0.05) benign(0) TCGA-23-2641-01 20 47835901 47835901 T C DDX27 Silent p.L3L 0.03 TCGA-23-2641-01 20 62039876 62039876 C A KCNQ2 Missense_Mutation p.V593L 0.48 tolerated(0.58) possibly_damaging(0.568) TCGA-23-2641-01 20 62587744 62587744 T C UCKL1 5'UTR 0.48 TCGA-23-2641-01 22 23523956 23523956 C G BCR Missense_Mutation p.P270R 0.36 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-23-2641-01 22 24583262 24583262 A G SUSD2 Missense_Mutation p.S579G 0.29 deleterious(0.04) possibly_damaging(0.472) TCGA-23-2641-01 22 51183314 51183314 C T ACR Silent p.P315P 0.78 TCGA-23-2641-01 2 165947014 165947014 G A SCN3A Silent p.P1883P 0.31 TCGA-23-2641-01 2 180634384 180634384 G A ZNF385B Silent p.F33F 0.33 TCGA-23-2641-01 2 27360035 27360035 G T C2orf53 Missense_Mutation p.S388Y 0.48 tolerated(0.06) benign(0.408) TCGA-23-2641-01 2 27466298 27466316 CGGATCCCCGCGCAGCCTA - CAD Frame_Shift_Del p.D2198Sfs*15 0.23 TCGA-23-2641-01 2 27601390 27601390 G C ZNF513 Missense_Mutation p.P248R 0.08 tolerated(0.19) possibly_damaging(0.804) TCGA-23-2641-01 2 27656279 27656279 G A NRBP1 Missense_Mutation p.E47K 0.05 tolerated(0.15) possibly_damaging(0.899) TCGA-23-2641-01 2 71046519 71046519 T A CLEC4F Missense_Mutation p.N79I 0.34 deleterious(0.01) possibly_damaging(0.599) TCGA-23-2641-01 2 95481002 95481002 T C ANKRD20A8P RNA 0.43 TCGA-23-2641-01 3 121980889 121980899 AGGTCCATCCC - CASR Frame_Shift_Del p.V337Efs*17 0.29 TCGA-23-2641-01 3 122090639 122090639 G A CCDC58 Silent p.L20L 0.04 TCGA-23-2641-01 3 12776127 12776127 G A TMEM40 3'UTR 0.39 TCGA-23-2641-01 3 128580291 128580291 C T RP11-723O4.9 5'Flank 0.54 TCGA-23-2641-01 3 133483731 133483731 G T TF Missense_Mutation p.C437F 0.60 deleterious(0) benign(0.063) TCGA-23-2641-01 3 140406647 140406647 G T TRIM42 Nonsense_Mutation p.E375* 0.28 TCGA-23-2641-01 3 183013187 183013187 G C MCF2L2 Missense_Mutation p.L526V 0.21 deleterious(0.02) possibly_damaging(0.883) TCGA-23-2641-01 3 195955761 195955761 C T SLC51A Silent p.L201L 0.21 TCGA-23-2641-01 3 38926838 38926838 C T SCN11A Missense_Mutation p.G1002D 0.44 tolerated(0.57) benign(0.079) TCGA-23-2641-01 4 155219074 155219074 T A DCHS2 Missense_Mutation p.E1676V 0.84 deleterious(0) benign(0.361) TCGA-23-2641-01 4 156751190 156751190 C A ASIC5 Missense_Mutation p.G446C 0.81 deleterious(0) probably_damaging(0.999) TCGA-23-2641-01 4 8307757 8307757 C T HTRA3 Missense_Mutation p.S419L 0.04 deleterious(0) possibly_damaging(0.87) TCGA-23-2641-01 4 8307765 8307765 C T HTRA3 Silent p.L422L 0.05 TCGA-23-2641-01 5 1335172 1335172 C T CLPTM1L Missense_Mutation p.G266R 0.39 deleterious(0) probably_damaging(0.999) TCGA-23-2641-01 5 140229994 140229994 C T PCDHA9 Silent p.D638D 0.39 TCGA-23-2641-01 5 140869355 140869355 A G PCDHGC5 Missense_Mutation p.K183R 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-23-2641-01 5 148730727 148730727 G T GRPEL2 Missense_Mutation p.G187V 0.49 deleterious(0.04) benign(0.424) TCGA-23-2641-01 5 176017575 176017575 G C CDHR2 Missense_Mutation p.E1142D 0.57 tolerated(0.11) benign(0.003) TCGA-23-2641-01 5 176024996 176024996 C A GPRIN1 Missense_Mutation p.G614W 0.37 deleterious(0) probably_damaging(0.947) TCGA-23-2641-01 5 37180169 37180169 A G C5orf42 Missense_Mutation p.V1896A 0.55 tolerated(0.27) benign(0.033) TCGA-23-2641-01 6 130465771 130465771 T C SAMD3 Missense_Mutation p.Q486R 0.05 tolerated(0.75) benign(0.004) TCGA-23-2641-01 6 26197305 26197305 C G HIST1H3D Silent p.S58S 0.46 TCGA-23-2641-01 6 29408282 29408282 T C OR10C1 Missense_Mutation p.S164P 0.49 deleterious(0) possibly_damaging(0.796) TCGA-23-2641-01 6 31637142 31637142 C G CSNK2B-LY6G5B-1181 Silent p.P138P 0.36 TCGA-23-2641-01 6 31996265 31996265 G A C4B Silent p.A1062A 0.15 TCGA-23-2641-01 6 32156101 32156101 G C PBX2 Missense_Mutation p.S159W 0.45 deleterious(0) probably_damaging(0.999) TCGA-23-2641-01 6 33282987 33282987 C T ZBTB22 Silent p.L569L 0.45 TCGA-23-2641-01 6 55266735 55266735 C A GFRAL 3'UTR 0.45 TCGA-23-2641-01 6 56504509 56504509 C T DST Silent p.Q357Q 0.40 TCGA-23-2641-01 7 100279859 100279859 C T GIGYF1 Splice_Site p.X921_splice 0.83 TCGA-23-2641-01 7 101833140 101833140 G A CUX1 Silent p.K366K 0.82 TCGA-23-2641-01 7 122635555 122635555 A G TAS2R16 Missense_Mutation p.V45A 0.25 tolerated(1) benign(0.065) TCGA-23-2641-01 7 143053905 143053905 G C FAM131B Missense_Mutation p.A274G 0.58 tolerated(0.27) benign(0.108) TCGA-23-2641-01 7 56174185 56174185 T C CHCHD2 5'UTR 0.53 TCGA-23-2641-01 8 131370364 131370392 CCGAGACAGAGATCTGGTCCGGCATCCTG - ASAP1 Splice_Site p.X20_splice 0.18 TCGA-23-2641-01 8 133911145 133911145 C T TG Missense_Mutation p.A1107V 0.43 tolerated(0.49) benign(0.015) TCGA-23-2641-01 8 133925442 133925442 G A TG Nonsense_Mutation p.W1437* 0.67 TCGA-23-2641-01 8 37553648 37553648 A C ZNF703 Silent p.R51R 0.38 TCGA-23-2641-01 8 99162737 99162737 G C POP1 Missense_Mutation p.G643R 0.45 deleterious(0) probably_damaging(1) TCGA-23-2641-01 9 3225011 3225011 T C RFX3 3'UTR 0.05 TCGA-23-2641-01 9 339061 339061 G - DOCK8 Frame_Shift_Del p.R493Nfs*16 0.09 TCGA-23-2641-01 9 34613833 34613833 A G DCTN3 Silent p.D169D 0.02 TCGA-23-2641-01 X 107978426 107978426 G A IRS4 Silent p.L383L 0.64 TCGA-23-2641-01 X 135630949 135630949 C T VGLL1 Missense_Mutation p.T139I 0.84 deleterious(0.01) benign(0.021) TCGA-23-2641-01 X 154290202 154290224 CTGAGCACAACACTTACGCAGTT - CMC4 Frame_Shift_Del p.E34Vfs*13 0.46 TCGA-23-2641-01 X 75397448 75397448 C T PBDC1 Intron 0.10 TCGA-23-2641-01 X 7868839 7868839 A T PNPLA4 Missense_Mutation p.V217E 0.78 tolerated(0.11) benign(0.005) TCGA-23-2643-01 10 99216673 99216673 G A ZDHHC16 3'UTR 0.08 TCGA-23-2643-01 11 73689120 73689120 G T UCP2 Missense_Mutation p.P50T 0.25 tolerated(0.13) benign(0.049) TCGA-23-2643-01 11 94759397 94759397 G T KDM4E Nonsense_Mutation p.E226* 0.36 TCGA-23-2643-01 12 10603159 10603159 C G KLRC1 Missense_Mutation p.E69D 0.27 deleterious(0.03) possibly_damaging(0.452) TCGA-23-2643-01 12 132328609 132328609 C A MMP17 Missense_Mutation p.D317E 0.35 tolerated(0.71) benign(0.003) TCGA-23-2643-01 12 39994461 39994461 G A ABCD2 Missense_Mutation p.L520F 0.33 deleterious(0.02) benign(0.362) TCGA-23-2643-01 12 48131261 48131261 G A RAPGEF3 3'UTR 0.43 TCGA-23-2643-01 12 53901312 53901312 C G NPFF 5'UTR 0.28 TCGA-23-2643-01 12 6838451 6838451 G A COPS7A Silent p.L122L 0.43 TCGA-23-2643-01 12 96252814 96252814 C T SNRPF 5'UTR 0.13 TCGA-23-2643-01 12 96367809 96367809 C T HAL 3'UTR 0.16 TCGA-23-2643-01 13 53217390 53217390 G T HNRNPA1L2 Nonsense_Mutation p.G255* 0.45 TCGA-23-2643-01 14 20844277 20844277 C T TEP1 Missense_Mutation p.G2079R 0.42 deleterious(0) probably_damaging(0.985) TCGA-23-2643-01 15 68118526 68118526 C T SKOR1 Silent p.R306R 0.21 TCGA-23-2643-01 16 3015034 3015034 G T KREMEN2 Missense_Mutation p.R90L 0.33 deleterious(0) probably_damaging(0.92) TCGA-23-2643-01 16 67986208 67986208 C T SLC12A4 Missense_Mutation p.V268M 0.40 deleterious(0) probably_damaging(1) TCGA-23-2643-01 17 2303993 2303993 G - MNT Frame_Shift_Del p.T5Sfs*82 0.45 TCGA-23-2643-01 17 42992478 42992478 C T GFAP Missense_Mutation p.R126Q 0.48 tolerated(1) benign(0.022) TCGA-23-2643-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.81 deleterious(0) probably_damaging(1) TCGA-23-2643-01 19 43348564 43348564 C G PSG10P RNA 0.10 TCGA-23-2643-01 19 53344477 53344477 C G ZNF468 Missense_Mutation p.C357S 0.21 deleterious(0) possibly_damaging(0.848) TCGA-23-2643-01 19 55720788 55720788 C G PTPRH Missense_Mutation p.G5A 0.11 benign(0.002) TCGA-23-2643-01 19 55720789 55720789 C A PTPRH Missense_Mutation p.G5C 0.12 benign(0.352) TCGA-23-2643-01 1 145589324 145589324 G C NUDT17 Missense_Mutation p.T35R 0.13 deleterious(0.05) benign(0.001) TCGA-23-2643-01 1 151110197 151110197 C T SEMA6C Missense_Mutation p.R249Q 0.16 deleterious(0.03) benign(0.417) TCGA-23-2643-01 1 211923233 211923233 G C LPGAT1 3'UTR 0.11 TCGA-23-2643-01 1 40219087 40219087 C A PPIE Intron 0.02 TCGA-23-2643-01 20 23804714 23804714 G C CST2 Nonsense_Mutation p.Y123* 0.14 TCGA-23-2643-01 20 56083841 56083841 G A CTCFL Missense_Mutation p.R499C 0.18 deleterious(0) possibly_damaging(0.629) TCGA-23-2643-01 21 36081021 36081021 A G CLIC6 Missense_Mutation p.H545R 0.19 deleterious(0) probably_damaging(0.992) TCGA-23-2643-01 21 46233960 46233960 G T SUMO3 Silent p.S27S 0.10 TCGA-23-2643-01 22 37465128 37465128 C A TMPRSS6 Missense_Mutation p.A709S 0.12 tolerated(0.14) possibly_damaging(0.568) TCGA-23-2643-01 22 50617477 50617477 C T PANX2 Missense_Mutation p.P602L 0.53 tolerated_low_confidence(0.2) benign(0.011) TCGA-23-2643-01 2 107446614 107446614 A G ST6GAL2 Missense_Mutation p.L409P 0.21 probably_damaging(1) TCGA-23-2643-01 2 233791839 233791839 G A NGEF Silent p.A147A 0.21 TCGA-23-2643-01 3 142274948 142274948 C G ATR Missense_Mutation p.K704N 0.17 deleterious(0.02) possibly_damaging(0.632) TCGA-23-2643-01 3 25835759 25835759 A G OXSM Missense_Mutation p.H385R 0.32 deleterious(0) probably_damaging(1) TCGA-23-2643-01 3 42742233 42742233 C G HHATL Missense_Mutation p.G29A 0.20 tolerated(0.64) benign(0.04) TCGA-23-2643-01 3 49713594 49713594 A T APEH Missense_Mutation p.D183V 0.27 tolerated(0.06) benign(0.011) TCGA-23-2643-01 4 114177019 114177019 G A ANK2 Silent p.A373A 0.52 TCGA-23-2643-01 4 118005645 118005645 G C TRAM1L1 Missense_Mutation p.S302W 0.24 deleterious(0.01) probably_damaging(0.959) TCGA-23-2643-01 4 185616499 185616499 G C CENPU Silent p.A400A 0.22 TCGA-23-2643-01 4 8470094 8470094 G C TRMT44 Intron 0.09 TCGA-23-2643-01 5 139909250 139909250 A T ANKHD1 Missense_Mutation p.D2240V 0.08 probably_damaging(0.922) TCGA-23-2643-01 5 161324410 161324410 C T GABRA1 Silent p.A451A 0.05 TCGA-23-2643-01 5 176084503 176084503 C G TSPAN17 Intron 0.31 TCGA-23-2643-01 5 50073958 50073958 C G PARP8 Missense_Mutation p.L192V 0.23 deleterious(0.02) possibly_damaging(0.723) TCGA-23-2643-01 5 52367801 52367801 C G ITGA2 Missense_Mutation p.R757G 0.05 tolerated(0.12) possibly_damaging(0.704) TCGA-23-2643-01 5 79355677 79355686 CTGCCCCGAG - THBS4 Frame_Shift_Del p.C313Afs*27 0.40 TCGA-23-2643-01 5 917281 917281 C A TRIP13 3'UTR 0.16 TCGA-23-2643-01 6 138539373 138539373 G A PBOV1 Nonsense_Mutation p.R54* 0.24 TCGA-23-2643-01 6 39564011 39564011 C T KIF6 Missense_Mutation p.R222H 0.16 deleterious(0) probably_damaging(1) TCGA-23-2643-01 6 51611518 51611518 C A PKHD1 Splice_Site p.X3333_splice 0.17 TCGA-23-2643-01 6 52843335 52843335 C A GSTA4 Missense_Mutation p.G201V 0.58 deleterious(0) probably_damaging(0.976) TCGA-23-2643-01 6 7230840 7230840 G C RREB1 Silent p.A836A 0.21 TCGA-23-2643-01 7 115889146 115889146 A G TES Silent p.K62K 0.21 TCGA-23-2643-01 7 142622597 142622597 C G TRPV5 Intron 0.07 TCGA-23-2643-01 7 1590564 1590564 G A TMEM184A Missense_Mutation p.R92C 0.21 deleterious(0) probably_damaging(0.999) TCGA-23-2643-01 7 64838814 64838814 C G ZNF92 5'UTR 0.20 TCGA-23-2643-01 7 65447157 65447157 G C GUSB Missense_Mutation p.S5W 0.29 tolerated_low_confidence(0.13) benign(0.001) TCGA-23-2643-01 7 97488629 97488629 A - ASNS Frame_Shift_Del p.L190* 0.10 TCGA-23-2643-01 8 103664187 103664187 T C KLF10 Missense_Mutation p.T125A 0.14 tolerated(1) benign(0) TCGA-23-2643-01 9 8485788 8485788 T A PTPRD Missense_Mutation p.Q1010L 0.05 tolerated(0.15) possibly_damaging(0.885) TCGA-23-2643-01 9 97401466 97401474 TGACTGCTG - FBP1 In_Frame_Del p.T40_V42del 0.52 TCGA-23-2643-01 X 105855952 105855952 C T CXorf57 Silent p.S214S 0.40 TCGA-23-2643-01 X 118925576 118925576 G A RPL39 5'UTR 0.56 TCGA-23-2643-01 X 132670122 132670122 A G GPC3 3'UTR 0.04 TCGA-23-2643-01 X 152159634 152159634 G T PNMA5 Missense_Mutation p.P170Q 0.34 deleterious(0.03) possibly_damaging(0.477) TCGA-23-2643-01 X 18283884 18283884 G A SCML2 Missense_Mutation p.P257S 0.20 tolerated(0.17) benign(0.01) TCGA-23-2643-01 X 21755710 21755710 G A SMPX Silent p.L80L 0.08 TCGA-23-2643-01 X 47424713 47424713 G A ARAF Missense_Mutation p.R174H 0.06 tolerated(0.53) benign(0) TCGA-23-2643-01 X 70608604 70608604 G A TAF1 Nonsense_Mutation p.W882* 0.40 TCGA-23-2643-01 X 70614011 70614011 A C TAF1 Missense_Mutation p.M1128L 0.18 tolerated(0.14) benign(0.086) TCGA-23-2647-01 10 105151963 105151963 C T USMG5 Silent p.V55V 0.06 TCGA-23-2647-01 10 121551040 121551040 G T INPP5F Missense_Mutation p.K109N 0.14 deleterious(0) probably_damaging(1) TCGA-23-2647-01 10 38241574 38241583 TTTCTCCCCT - ZNF25 Frame_Shift_Del p.G282Pfs*97 0.35 TCGA-23-2647-01 10 49812950 49812950 C G ARHGAP22 5'UTR 0.20 TCGA-23-2647-01 11 117869480 117869480 A T IL10RA Silent p.P287P 0.40 TCGA-23-2647-01 11 17758017 17758017 G - KCNC1 Frame_Shift_Del p.L157Sfs*63 0.39 TCGA-23-2647-01 11 18159377 18159377 C A MRGPRX3 Missense_Mutation p.P210T 0.42 deleterious(0.05) benign(0.366) TCGA-23-2647-01 11 22272328 22272328 T C ANO5 Missense_Mutation p.M352T 0.04 deleterious(0) possibly_damaging(0.751) TCGA-23-2647-01 11 30358292 30358292 C A ARL14EP Missense_Mutation p.Q245K 0.03 tolerated(0.1) probably_damaging(0.968) TCGA-23-2647-01 11 49974762 49974790 TACCCATTGATAAAGCAGTTGCTGTATTC - OR4C13 Frame_Shift_Del p.P264Hfs*24 0.33 TCGA-23-2647-01 11 56230434 56230434 G C OR5M9 Silent p.V148V 0.40 TCGA-23-2647-01 11 7091590 7091590 A C NLRP14 Missense_Mutation p.I1017L 0.39 tolerated(0.31) benign(0.006) TCGA-23-2647-01 11 77553635 77553635 G T AAMDC Silent p.G31G 0.40 TCGA-23-2647-01 12 2968344 2968344 A G FOXM1 Silent p.P622P 0.23 TCGA-23-2647-01 12 4479675 4479675 G T FGF23 Missense_Mutation p.A197D 0.30 tolerated(0.06) benign(0.091) TCGA-23-2647-01 12 7087774 7087774 C G LPCAT3 Missense_Mutation p.W288C 0.14 deleterious(0) probably_damaging(1) TCGA-23-2647-01 14 20586281 20586281 T A OR4K17 Missense_Mutation p.L239Q 0.68 deleterious(0) probably_damaging(0.919) TCGA-23-2647-01 14 50131833 50131833 T G POLE2 Missense_Mutation p.S209R 0.62 deleterious(0) benign(0.236) TCGA-23-2647-01 14 94413738 94413738 C T ASB2 Missense_Mutation p.G337S 0.36 deleterious(0) probably_damaging(0.999) TCGA-23-2647-01 15 20488788 20488788 T G CHEK2P2 RNA 0.08 TCGA-23-2647-01 15 48580692 48580692 G A SLC12A1 Missense_Mutation p.R951H 0.07 deleterious(0.01) probably_damaging(0.99) TCGA-23-2647-01 15 64429966 64429966 T C SNX1 Intron 0.23 TCGA-23-2647-01 16 31503377 31503377 T C C16orf58 Missense_Mutation p.K421R 0.32 tolerated(0.9) benign(0.001) TCGA-23-2647-01 16 67222695 67222695 G A EXOC3L1 Missense_Mutation p.P119L 0.57 tolerated(0.06) benign(0.197) TCGA-23-2647-01 16 7383021 7383021 G T RBFOX1 Missense_Mutation p.V7F 0.38 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-23-2647-01 16 9186847 9186847 A G C16orf72 Missense_Mutation p.N99S 0.36 tolerated(0.96) possibly_damaging(0.824) TCGA-23-2647-01 17 42288464 42288464 G A UBTF Silent p.I382I 0.69 TCGA-23-2647-01 17 7574008 7574009 - TCAC TP53 Frame_Shift_Ins p.M340Sfs*8 0.73 TCGA-23-2647-01 18 3582024 3582024 G A DLGAP1 Missense_Mutation p.A605V 0.07 tolerated(0.11) probably_damaging(0.997) TCGA-23-2647-01 18 54424291 54424291 C T WDR7 Missense_Mutation p.R823C 0.70 deleterious(0.02) benign(0.167) TCGA-23-2647-01 19 10116775 10116775 C G COL5A3 Missense_Mutation p.G74A 0.38 unknown(0) TCGA-23-2647-01 19 10404451 10404451 G C ICAM5 Missense_Mutation p.V515L 0.37 tolerated(0.14) benign(0.15) TCGA-23-2647-01 19 39847636 39847636 C T SAMD4B Missense_Mutation p.R35C 0.33 tolerated(0.06) benign(0.032) TCGA-23-2647-01 19 46094336 46094336 G A GPR4 Silent p.R263R 0.17 TCGA-23-2647-01 1 107691158 107691158 C A NTNG1 5'UTR 0.34 TCGA-23-2647-01 1 152648665 152648665 C A LCE2C Silent p.P58P 0.39 TCGA-23-2647-01 1 185125846 185125846 G A TRMT1L 5'UTR 0.67 TCGA-23-2647-01 1 186266037 186266037 G T PRG4 Silent p.L10L 0.23 TCGA-23-2647-01 1 20412612 20412612 A G PLA2G5 Missense_Mutation p.K26R 0.30 tolerated(0.72) benign(0.067) TCGA-23-2647-01 1 204513713 204513713 G C MDM4 Missense_Mutation p.L241F 0.19 deleterious(0.03) benign(0.162) TCGA-23-2647-01 1 249119163 249119163 C T SH3BP5L 5'UTR 0.28 TCGA-23-2647-01 1 27180284 27180284 C G ZDHHC18 Missense_Mutation p.P373A 0.40 tolerated(0.07) benign(0.105) TCGA-23-2647-01 1 36563246 36563246 G A COL8A2 Missense_Mutation p.S679L 0.22 deleterious(0) probably_damaging(1) TCGA-23-2647-01 1 43912706 43912720 GCGCCTCGTGCATCA - SZT2 In_Frame_Del p.R2995_Q2999del 0.14 TCGA-23-2647-01 1 92946162 92946162 C A GFI1 Missense_Mutation p.S261I 0.27 tolerated(0.11) possibly_damaging(0.677) TCGA-23-2647-01 20 32663739 32663739 A T RALY Missense_Mutation p.K146M 0.05 deleterious(0) probably_damaging(0.968) TCGA-23-2647-01 21 34038437 34038437 G A SYNJ1 Missense_Mutation p.A693V 0.40 deleterious(0) probably_damaging(0.956) TCGA-23-2647-01 22 22277737 22277747 CGTCAAAGAAG - PPM1F Frame_Shift_Del p.F362Rfs*82 0.57 TCGA-23-2647-01 22 26688766 26688766 G T SEZ6L Missense_Mutation p.K163N 0.40 deleterious_low_confidence(0.04) possibly_damaging(0.478) TCGA-23-2647-01 22 50966077 50966077 C T TYMP Missense_Mutation p.G196R 0.54 tolerated(0.89) benign(0.046) TCGA-23-2647-01 2 175962273 175962273 C G ATF2 Missense_Mutation p.D293H 0.40 tolerated(0.18) possibly_damaging(0.707) TCGA-23-2647-01 2 27480126 27480126 G - SLC30A3 Frame_Shift_Del p.L225Cfs*240 0.36 TCGA-23-2647-01 2 48686934 48686934 G A PPP1R21 Silent p.E139E 0.08 TCGA-23-2647-01 3 14769977 14769977 G C C3orf20 Missense_Mutation p.K574N 0.24 tolerated(0.14) benign(0.376) TCGA-23-2647-01 3 149290703 149290703 G A WWTR1 Silent p.V172V 0.78 TCGA-23-2647-01 3 150400031 150400031 C G FAM194A Missense_Mutation p.D286H 0.73 deleterious(0) probably_damaging(0.98) TCGA-23-2647-01 5 140175418 140175418 A C PCDHA2 Missense_Mutation p.Q290P 0.79 deleterious_low_confidence(0.02) benign(0.108) TCGA-23-2647-01 5 72857055 72857055 G C ANKRA2 Silent p.T116T 0.68 TCGA-23-2647-01 6 152557382 152557382 A T SYNE1 Missense_Mutation p.D6752E 0.10 possibly_damaging(0.728) TCGA-23-2647-01 6 1930358 1930358 G C GMDS Silent p.G250G 0.29 TCGA-23-2647-01 6 84563457 84563457 A C RIPPLY2 Missense_Mutation p.K47Q 0.39 tolerated(0.13) benign(0.032) TCGA-23-2647-01 7 102669142 102669143 - T FBXL13 Frame_Shift_Ins p.M41Nfs*32 0.31 TCGA-23-2647-01 7 113519201 113519201 C T PPP1R3A Missense_Mutation p.S649N 0.44 tolerated(1) benign(0) TCGA-23-2647-01 7 138441222 138441222 T A ATP6V0A4 Missense_Mutation p.I235F 0.12 deleterious(0.01) possibly_damaging(0.72) TCGA-23-2647-01 7 146805326 146805326 C T CNTNAP2 Missense_Mutation p.A213V 0.36 deleterious(0) benign(0.007) TCGA-23-2647-01 7 148702414 148702414 C T PDIA4 Silent p.E447E 0.41 TCGA-23-2647-01 7 148895804 148895804 T G ZNF282 Missense_Mutation p.V182G 0.33 deleterious(0) possibly_damaging(0.848) TCGA-23-2647-01 7 55863655 55863655 T G SEPT14 Missense_Mutation p.Q417P 0.39 deleterious(0.04) benign(0.01) TCGA-23-2647-01 8 119936867 119936867 C A TNFRSF11B Missense_Mutation p.A318S 0.03 tolerated(0.38) benign(0.012) TCGA-23-2647-01 8 22442878 22442878 G C PDLIM2 Missense_Mutation p.R419P 0.66 deleterious(0.03) benign(0.047) TCGA-23-2647-01 9 136336974 136336974 C G SLC2A6 3'UTR 0.79 TCGA-23-2647-01 9 96233573 96233573 G C FAM120A Missense_Mutation p.G209R 0.24 deleterious(0) probably_damaging(1) TCGA-23-2647-01 X 127185282 127185282 C A ACTRT1 Missense_Mutation p.G302W 0.10 deleterious(0) probably_damaging(0.997) TCGA-23-2647-01 X 132887741 132887741 C T GPC3 Missense_Mutation p.G267E 0.66 deleterious(0) probably_damaging(0.991) TCGA-23-2647-01 X 144337311 144337311 C A SPANXN1 Missense_Mutation p.Q66K 0.58 deleterious(0.01) probably_damaging(0.996) TCGA-23-2647-01 X 23019108 23019108 G A DDX53 Missense_Mutation p.V312M 0.63 deleterious(0) probably_damaging(0.999) TCGA-23-2647-01 X 6069176 6069176 G A NLGN4X Missense_Mutation p.P111L 0.63 deleterious(0.01) probably_damaging(0.999) TCGA-23-2649-01 10 104678273 104678273 G C CNNM2 Missense_Mutation p.K12N 0.24 deleterious_low_confidence(0) benign(0.403) TCGA-23-2649-01 10 105361944 105361944 C G SH3PXD2A Missense_Mutation p.G983R 0.25 deleterious(0.05) benign(0.323) TCGA-23-2649-01 10 1170258 1170258 A G WDR37 Missense_Mutation p.I402V 0.15 tolerated(0.26) possibly_damaging(0.456) TCGA-23-2649-01 10 17276768 17276768 G A VIM Missense_Mutation p.R320Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-23-2649-01 10 70738604 70738604 G - DDX21 Frame_Shift_Del p.V637* 0.24 TCGA-23-2649-01 10 74683987 74683987 G A OIT3 Missense_Mutation p.V318M 0.22 deleterious(0.02) probably_damaging(0.973) TCGA-23-2649-01 11 104774117 104774117 C T CASP12 5'Flank 0.38 TCGA-23-2649-01 11 10615085 10615085 G C MRVI1 Missense_Mutation p.P710R 0.30 deleterious(0.01) possibly_damaging(0.717) TCGA-23-2649-01 11 118047151 118047158 AGAGACTG - SCN2B 5'UTR 0.28 TCGA-23-2649-01 11 118486873 118486873 A C PHLDB1 Missense_Mutation p.N101T 0.37 deleterious(0) probably_damaging(0.988) TCGA-23-2649-01 11 120198146 120198146 A C TMEM136 Missense_Mutation p.H21P 0.29 deleterious_low_confidence(0.03) benign(0.016) TCGA-23-2649-01 11 46893150 46893150 C A LRP4 Nonsense_Mutation p.E1540* 0.27 TCGA-23-2649-01 11 56431795 56431795 C G OR5AR1 Missense_Mutation p.L212V 0.30 tolerated(0.34) possibly_damaging(0.52) TCGA-23-2649-01 11 57135539 57135539 C A P2RX3 Missense_Mutation p.A300D 0.18 deleterious(0) probably_damaging(1) TCGA-23-2649-01 11 63713370 63713390 TGGATGCCGTTTGTGCCAAAG - NAA40 In_Frame_Del p.V25_A31del 0.32 TCGA-23-2649-01 11 85445291 85445291 C G SYTL2 Missense_Mutation p.E360Q 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-23-2649-01 11 85779710 85779710 T C PICALM Missense_Mutation p.K38R 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-23-2649-01 12 101701959 101701974 TCAGGATGATGGGCTC - UTP20 Splice_Site p.X666_splice 0.27 TCGA-23-2649-01 12 41323797 41323797 A G CNTN1 Missense_Mutation p.I232M 0.25 tolerated(0.17) benign(0.065) TCGA-23-2649-01 12 42853781 42853781 C A PRICKLE1 Nonsense_Mutation p.G776* 0.55 TCGA-23-2649-01 12 48173946 48173946 G T SLC48A1 Missense_Mutation p.S108I 0.24 deleterious(0) possibly_damaging(0.731) TCGA-23-2649-01 12 48919586 48919586 C A OR8S1 Missense_Mutation p.P58T 0.19 deleterious(0) probably_damaging(0.991) TCGA-23-2649-01 12 48919587 48919587 C G OR8S1 Missense_Mutation p.P58R 0.19 deleterious(0) probably_damaging(0.997) TCGA-23-2649-01 12 69135623 69135623 C G NUP107 Missense_Mutation p.Q845E 0.29 deleterious(0) possibly_damaging(0.637) TCGA-23-2649-01 13 28913358 28913358 C T FLT1 Missense_Mutation p.R812Q 0.24 tolerated(0.24) possibly_damaging(0.663) TCGA-23-2649-01 14 102901427 102901427 A G TECPR2 Missense_Mutation p.Y758C 0.48 deleterious(0) probably_damaging(0.999) TCGA-23-2649-01 14 103336579 103336579 A C TRAF3 Missense_Mutation p.Q14P 0.52 tolerated_low_confidence(0.1) benign(0) TCGA-23-2649-01 14 105930753 105930753 C T MTA1 Missense_Mutation p.T398I 0.50 deleterious(0.03) benign(0.405) TCGA-23-2649-01 14 70634682 70634682 A G SLC8A3 Missense_Mutation p.I153T 0.25 deleterious(0) probably_damaging(0.997) TCGA-23-2649-01 14 76232700 76232700 T C TTLL5 Silent p.N668N 0.70 TCGA-23-2649-01 14 93650695 93650695 G C MOAP1 5'UTR 0.67 TCGA-23-2649-01 15 79058799 79058799 G T ADAMTS7 Missense_Mutation p.P1152T 0.21 tolerated(0.21) benign(0.071) TCGA-23-2649-01 16 16244575 16244575 C A ABCC6 Missense_Mutation p.Q1421H 0.50 deleterious(0.04) possibly_damaging(0.811) TCGA-23-2649-01 16 27549656 27549656 G A GTF3C1 Silent p.I151I 0.37 TCGA-23-2649-01 16 4390365 4390365 G C CORO7-PAM16 Missense_Mutation p.I1034M 0.22 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-23-2649-01 16 58075617 58075617 A C MMP15 Missense_Mutation p.Q336P 0.24 tolerated(0.76) benign(0.062) TCGA-23-2649-01 16 67979072 67979072 G A SLC12A4 Silent p.V1030V 0.50 TCGA-23-2649-01 16 72831913 72831928 TTGAGTGAAAGATTCC - ZFHX3 Frame_Shift_Del p.E1552Rfs*5 0.20 TCGA-23-2649-01 16 89334918 89334918 C T ANKRD11 Missense_Mutation p.V2654I 0.18 probably_damaging(0.993) TCGA-23-2649-01 16 89789687 89789687 C T ZNF276 Silent p.S192S 0.30 TCGA-23-2649-01 17 12666711 12666711 T G MYOCD Missense_Mutation p.I904S 0.27 deleterious(0) possibly_damaging(0.761) TCGA-23-2649-01 17 16326074 16326074 G A TRPV2 Missense_Mutation p.A166T 0.34 deleterious(0) probably_damaging(0.984) TCGA-23-2649-01 17 26962549 26962549 G C KIAA0100 Missense_Mutation p.L686V 0.53 tolerated(0.1) benign(0.276) TCGA-23-2649-01 17 27794198 27794198 C T TAOK1 Silent p.I56I 0.32 TCGA-23-2649-01 17 29184107 29184107 A T ATAD5 Nonsense_Mutation p.K924* 0.42 TCGA-23-2649-01 17 40939863 40939863 G A WNK4 Silent p.Q603Q 0.37 TCGA-23-2649-01 17 73228962 73228962 G C NUP85 Missense_Mutation p.K471N 0.43 deleterious(0) possibly_damaging(0.854) TCGA-23-2649-01 17 7577579 7577579 G C TP53 Nonsense_Mutation p.Y234* 0.78 TCGA-23-2649-01 18 12686335 12686335 G C CEP76 Missense_Mutation p.R350G 0.25 deleterious(0.04) possibly_damaging(0.579) TCGA-23-2649-01 18 21033305 21033305 C G RIOK3 5'UTR 0.27 TCGA-23-2649-01 18 31523052 31523052 T C NOL4 Missense_Mutation p.R507G 0.30 deleterious(0) possibly_damaging(0.808) TCGA-23-2649-01 18 44559660 44559660 T C TCEB3B Missense_Mutation p.E659G 0.28 deleterious(0.02) benign(0.001) TCGA-23-2649-01 18 56204618 56204618 G C ALPK2 Missense_Mutation p.P934R 0.27 deleterious(0.01) probably_damaging(0.985) TCGA-23-2649-01 18 580774 580774 G A CETN1 Silent p.S122S 0.25 TCGA-23-2649-01 19 15726547 15726547 C T AD000091.2 5'Flank 0.28 TCGA-23-2649-01 19 16799107 16799107 T A TMEM38A Missense_Mutation p.H275Q 0.20 tolerated(0.6) benign(0.002) TCGA-23-2649-01 19 33167146 33167146 C A ANKRD27 5'Flank 0.24 TCGA-23-2649-01 19 40408751 40408751 C T FCGBP Missense_Mutation p.G1363D 0.25 probably_damaging(0.914) TCGA-23-2649-01 19 40408752 40408752 C A FCGBP Missense_Mutation p.G1363C 0.25 probably_damaging(1) TCGA-23-2649-01 19 40477071 40477071 C A PSMC4 5'UTR 0.28 TCGA-23-2649-01 19 46915441 46915441 C T CCDC8 Silent p.R209R 0.56 TCGA-23-2649-01 19 54782141 54782141 T C LILRB2 Missense_Mutation p.S411G 0.14 deleterious(0) probably_damaging(0.998) TCGA-23-2649-01 19 54782142 54782142 G T LILRB2 Silent p.P410P 0.13 TCGA-23-2649-01 19 871095 871095 C G MED16 Missense_Mutation p.G753R 0.30 deleterious(0) probably_damaging(0.988) TCGA-23-2649-01 1 110299781 110299781 C G EPS8L3 Missense_Mutation p.A327P 0.22 tolerated(0.16) possibly_damaging(0.854) TCGA-23-2649-01 1 111661425 111661425 A G DRAM2 Splice_Site p.X231_splice 0.35 TCGA-23-2649-01 1 145827032 145827032 T C GPR89A 5'UTR 0.26 TCGA-23-2649-01 1 153333314 153333314 A C S100A9 Nonstop_Mutation p.*115Yext*24 0.25 TCGA-23-2649-01 1 156618391 156618391 G A BCAN Silent p.K267K 0.24 TCGA-23-2649-01 1 156642460 156642460 T G NES Missense_Mutation p.K507T 0.16 tolerated(0.05) benign(0.051) TCGA-23-2649-01 1 157490854 157490854 T C FCRL5 Missense_Mutation p.N823S 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-23-2649-01 1 157666820 157666820 T C FCRL3 Intron 0.11 TCGA-23-2649-01 1 162535876 162535876 C G UAP1 Silent p.L6L 0.12 TCGA-23-2649-01 1 16354393 16354393 G T CLCNKA Missense_Mutation p.A287S 0.27 tolerated(0.09) benign(0.056) TCGA-23-2649-01 1 166944486 166944486 C T ILDR2 Missense_Mutation p.R7K 0.28 tolerated(0.38) benign(0.01) TCGA-23-2649-01 1 168161550 168161550 C A TIPRL Intron 0.21 TCGA-23-2649-01 1 171486773 171486773 T C PRRC2C Silent p.P188P 0.20 TCGA-23-2649-01 1 180165665 180165665 C T QSOX1 Silent p.D579D 0.20 TCGA-23-2649-01 1 202861626 202861626 C T KLHL12 3'UTR 0.25 TCGA-23-2649-01 1 206945708 206945708 G A IL10 Nonsense_Mutation p.Q25* 0.19 TCGA-23-2649-01 1 217955521 217955521 C A SPATA17 Silent p.P243P 0.24 TCGA-23-2649-01 1 223990521 223990521 T C TP53BP2 Missense_Mutation p.E303G 0.28 deleterious(0.02) possibly_damaging(0.791) TCGA-23-2649-01 1 230472976 230472976 T A PGBD5 Missense_Mutation p.K249M 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-23-2649-01 1 23885373 23885373 C A ID3 Intron 0.36 TCGA-23-2649-01 1 245018790 245018790 C A HNRNPU Missense_Mutation p.G763V 0.26 deleterious(0.01) unknown(0) TCGA-23-2649-01 1 26795504 26795504 G C DHDDS Missense_Mutation p.R296P 0.34 tolerated(0.33) possibly_damaging(0.629) TCGA-23-2649-01 1 35250947 35250947 C A GJB3 Missense_Mutation p.S195Y 0.37 deleterious(0) probably_damaging(1) TCGA-23-2649-01 1 40349001 40349001 C T TRIT1 Missense_Mutation p.D55N 0.14 deleterious(0) probably_damaging(1) TCGA-23-2649-01 1 41978923 41978923 T - HIVEP3 Frame_Shift_Del p.N1990Tfs*198 0.53 TCGA-23-2649-01 1 94997915 94997915 G C F3 Missense_Mutation p.P238R 0.31 tolerated(0.53) benign(0.015) TCGA-23-2649-01 20 37356582 37356582 C T SLC32A1 Missense_Mutation p.A293V 0.50 deleterious(0.03) benign(0.356) TCGA-23-2649-01 21 15517068 15517068 A G LIPI Missense_Mutation p.Y412H 0.15 tolerated(0.52) possibly_damaging(0.804) TCGA-23-2649-01 21 34725117 34725117 G C IFNAR1 Silent p.L399L 0.14 TCGA-23-2649-01 21 38460546 38460546 G A TTC3 Missense_Mutation p.D80N 0.12 deleterious(0.01) benign(0.279) TCGA-23-2649-01 21 43523733 43523733 G C C21orf128 3'UTR 0.19 TCGA-23-2649-01 2 113951510 113951510 C G PSD4 Silent p.P722P 0.32 TCGA-23-2649-01 2 127818189 127818189 C A BIN1 Intron 0.53 TCGA-23-2649-01 2 131688686 131688686 T G ARHGEF4 Silent p.P52P 0.21 TCGA-23-2649-01 2 131688694 131688694 C A ARHGEF4 Missense_Mutation p.P55H 0.19 deleterious_low_confidence(0.02) benign(0.188) TCGA-23-2649-01 2 136558237 136558238 CC ACA LCT Frame_Shift_Ins p.W1602Lfs*3 0.28 TCGA-23-2649-01 2 166737246 166737246 C T TTC21B Missense_Mutation p.A1250T 0.21 deleterious(0) possibly_damaging(0.899) TCGA-23-2649-01 2 178083987 178083987 C G HNRNPA3 Missense_Mutation p.S366C 0.15 deleterious_low_confidence(0.02) benign(0.184) TCGA-23-2649-01 2 21225627 21225627 C G APOB Missense_Mutation p.E4223Q 0.18 benign(0.212) TCGA-23-2649-01 2 219259733 219259733 A T SLC11A1 Missense_Mutation p.D543V 0.55 deleterious_low_confidence(0.02) benign(0.031) TCGA-23-2649-01 2 228217244 228217244 G C MFF Missense_Mutation p.G256A 0.31 tolerated(0.1) probably_damaging(0.977) TCGA-23-2649-01 2 234366988 234366988 G C DGKD Missense_Mutation p.S880T 0.25 deleterious(0.05) probably_damaging(0.913) TCGA-23-2649-01 2 241402904 241402904 G C GPC1 Silent p.L286L 0.75 TCGA-23-2649-01 2 24285961 24285961 A G FKBP1B Missense_Mutation p.T76A 0.47 deleterious(0.01) benign(0.421) TCGA-23-2649-01 2 37035991 37035991 C T VIT Missense_Mutation p.T589M 0.23 deleterious(0) probably_damaging(1) TCGA-23-2649-01 2 38893208 38893208 G A GALM 5'UTR 0.20 TCGA-23-2649-01 3 100373784 100373784 C A GPR128 Missense_Mutation p.N495K 0.18 tolerated(0.57) benign(0.093) TCGA-23-2649-01 3 118866357 118866357 C T C3orf30 Missense_Mutation p.P441S 0.15 tolerated(0.59) benign(0.086) TCGA-23-2649-01 3 122632161 122632161 C T SEMA5B Silent p.R851R 0.27 TCGA-23-2649-01 3 127337955 127337955 G T MCM2 Missense_Mutation p.S700I 0.31 tolerated(0.15) benign(0.102) TCGA-23-2649-01 3 133647616 133647616 T A C3orf36 Missense_Mutation p.E11V 0.19 tolerated_low_confidence(0.09) possibly_damaging(0.607) TCGA-23-2649-01 3 15477870 15477870 T G EAF1 Missense_Mutation p.I183S 0.40 deleterious(0) benign(0.036) TCGA-23-2649-01 3 164725758 164725758 T C SI Missense_Mutation p.N1403S 0.11 tolerated(0.09) benign(0.021) TCGA-23-2649-01 3 38542913 38542913 C G EXOG Missense_Mutation p.F127L 0.32 tolerated(0.68) benign(0) TCGA-23-2649-01 3 46622701 46622701 G T TDGF1 Missense_Mutation p.M176I 0.28 tolerated(0.37) benign(0.012) TCGA-23-2649-01 3 93772267 93772270 TTAT - ARL13B 3'UTR 0.55 TCGA-23-2649-01 4 104579400 104579400 A G TACR3 Missense_Mutation p.W237R 0.46 deleterious(0.01) probably_damaging(0.996) TCGA-23-2649-01 4 106888398 106888398 C G NPNT Missense_Mutation p.R497G 0.24 deleterious(0) probably_damaging(0.999) TCGA-23-2649-01 4 138442092 138442092 T C PCDH18 3'UTR 0.21 TCGA-23-2649-01 4 71201025 71201025 C G CABS1 Missense_Mutation p.T90S 0.26 tolerated(0.19) possibly_damaging(0.866) TCGA-23-2649-01 4 71346579 71346579 A - MUC7 Frame_Shift_Del p.K40Nfs*13 0.18 TCGA-23-2649-01 4 84502751 84502751 G C AGPAT9 Missense_Mutation p.G82A 0.29 tolerated(0.66) benign(0.156) TCGA-23-2649-01 4 90874341 90874353 ATTTAGTGCTCAT - MMRN1 Frame_Shift_Del p.S1155Lfs*4 0.27 TCGA-23-2649-01 5 13781064 13781064 G C DNAH5 Missense_Mutation p.S2942C 0.17 possibly_damaging(0.902) TCGA-23-2649-01 5 1441484 1441484 G A SLC6A3 Silent p.P136P 0.16 TCGA-23-2649-01 5 148748176 148748176 G T PCYOX1L Missense_Mutation p.D482Y 0.35 deleterious(0) probably_damaging(1) TCGA-23-2649-01 5 176916810 176916810 G C PDLIM7 Missense_Mutation p.P199R 0.18 deleterious(0.04) benign(0.01) TCGA-23-2649-01 5 177571007 177571007 C T RMND5B Nonsense_Mutation p.R198* 0.47 TCGA-23-2649-01 5 33527447 33527447 A C ADAMTS12 Missense_Mutation p.L1544R 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-23-2649-01 5 37061025 37061025 C T NIPBL Missense_Mutation p.H2589Y 0.21 tolerated(0.16) benign(0.003) TCGA-23-2649-01 5 52096887 52096887 A G PELO Missense_Mutation p.Y220C 0.30 deleterious(0) probably_damaging(0.995) TCGA-23-2649-01 5 68728873 68728873 C T MARVELD2 Silent p.L486L 0.26 TCGA-23-2649-01 5 7891483 7891483 A G MTRR Splice_Site p.X470_splice 0.15 TCGA-23-2649-01 6 100838549 100838549 C T SIM1 Silent p.S663S 0.06 TCGA-23-2649-01 6 108076812 108076812 C G SCML4 Intron 0.08 TCGA-23-2649-01 6 10874129 10874129 C G GCM2 3'UTR 0.33 TCGA-23-2649-01 6 109308688 109308688 C G SESN1 3'UTR 0.41 TCGA-23-2649-01 6 132966668 132966668 T C TAAR1 Missense_Mutation p.I159V 0.26 tolerated(1) benign(0.26) TCGA-23-2649-01 6 138428387 138428387 C T PERP Missense_Mutation p.A31T 0.38 tolerated(0.11) benign(0.019) TCGA-23-2649-01 6 30712169 30712169 C A IER3 Nonsense_Mutation p.E43* 0.55 TCGA-23-2649-01 6 38645034 38645034 C T GLO1 3'UTR 0.23 TCGA-23-2649-01 6 43270123 43270123 C G SLC22A7 Missense_Mutation p.A416G 0.39 deleterious(0.05) benign(0.441) TCGA-23-2649-01 6 73787100 73787100 T A KCNQ5 Missense_Mutation p.N224K 0.48 deleterious(0) possibly_damaging(0.475) TCGA-23-2649-01 6 83839159 83839159 C G DOPEY1 Nonsense_Mutation p.S758* 0.08 TCGA-23-2649-01 6 83848674 83848674 G A DOPEY1 Missense_Mutation p.G1638D 0.30 deleterious(0) probably_damaging(0.998) TCGA-23-2649-01 7 100028200 100028200 C T MEPCE Silent p.L187L 0.27 TCGA-23-2649-01 7 100175461 100175492 GCGTTCTCTGGGTCCCCGGGGCTCCCGGGCCA - LRCH4 Frame_Shift_Del p.L331Qfs*14 0.62 TCGA-23-2649-01 7 107638875 107638875 G A LAMB1 Silent p.D92D 0.27 TCGA-23-2649-01 7 55270491 55270491 G C EGFR Intron 0.19 TCGA-23-2649-01 7 65540936 65540936 C G ASL Intron 0.24 TCGA-23-2649-01 7 87032453 87032453 T C ABCB4 Missense_Mutation p.K1218E 0.26 deleterious(0) probably_damaging(0.979) TCGA-23-2649-01 8 121313008 121313008 G A COL14A1 Missense_Mutation p.C1451Y 0.07 deleterious(0) probably_damaging(0.998) TCGA-23-2649-01 8 139833637 139833637 A G COL22A1 Silent p.D329D 0.08 TCGA-23-2649-01 8 143817049 143817049 G A THEM6 3'UTR 0.14 TCGA-23-2649-01 8 74894733 74894733 T G TMEM70 3'UTR 0.37 TCGA-23-2649-01 9 109773468 109773468 G C ZNF462 3'UTR 0.44 TCGA-23-2649-01 X 100880002 100880002 C T ARMCX3 Silent p.T11T 0.27 TCGA-23-2649-01 X 102885158 102885158 G A TCEAL1 Missense_Mutation p.R105K 0.21 tolerated(0.07) possibly_damaging(0.801) TCGA-23-2649-01 X 117035836 117035836 G A KLHL13 Silent p.G483G 0.23 TCGA-23-2649-01 X 129271256 129271264 CAGACAGGG - AIFM1 Intron 0.39 TCGA-23-2649-01 X 132161219 132161219 G A USP26 Missense_Mutation p.R344W 0.19 deleterious(0) possibly_damaging(0.601) TCGA-23-2649-01 X 153284523 153284523 G A IRAK1 Missense_Mutation p.P148L 0.16 deleterious(0) possibly_damaging(0.887) TCGA-23-2649-01 X 19390893 19390893 C A MAP3K15 Nonsense_Mutation p.E996* 0.25 TCGA-23-2649-01 X 34148343 34148343 A G FAM47A Missense_Mutation p.S685P 0.33 tolerated(0.58) possibly_damaging(0.782) TCGA-23-2649-01 X 55047546 55047546 C A ALAS2 Missense_Mutation p.V193F 0.16 deleterious(0) probably_damaging(0.99) TCGA-23-2649-01 X 55478888 55478888 C T MAGEH1 Silent p.A27A 0.08 TCGA-23-2649-01 X 71933809 71933809 C T PHKA1 5'UTR 0.16 TCGA-24-1431-01 10 105362558 105362558 G A SH3PXD2A Missense_Mutation p.T778M 0.15 tolerated(0.08) benign(0.036) TCGA-24-1431-01 10 117704258 117704258 C T ATRNL1 Missense_Mutation p.H1370Y 0.05 tolerated(0.08) benign(0.062) TCGA-24-1431-01 10 14816463 14816463 G A FAM107B Missense_Mutation p.P67L 0.05 deleterious_low_confidence(0.01) benign(0.01) TCGA-24-1431-01 10 294432 294432 G A ZMYND11 Missense_Mutation p.V462M 0.15 tolerated(0.16) benign(0.207) TCGA-24-1431-01 10 81318659 81318659 C A SFTPA2 Missense_Mutation p.G92V 0.07 deleterious(0.01) probably_damaging(0.973) TCGA-24-1431-01 11 102826424 102826424 C G MMP13 Missense_Mutation p.G4A 0.47 tolerated(0.59) benign(0.001) TCGA-24-1431-01 11 121000464 121000464 G T TECTA Missense_Mutation p.D829Y 0.02 tolerated(0.31) benign(0.17) TCGA-24-1431-01 11 17408887 17408887 A G KCNJ11 Missense_Mutation p.L251P 0.06 deleterious(0) probably_damaging(1) TCGA-24-1431-01 11 18387482 18387482 C A GTF2H1 3'UTR 0.61 TCGA-24-1431-01 11 27389448 27389448 C A LGR4 Missense_Mutation p.R941L 0.55 tolerated_low_confidence(0.09) benign(0.016) TCGA-24-1431-01 11 47333342 47333342 G T MADD Silent p.G1406G 0.23 TCGA-24-1431-01 11 6048913 6048913 G T OR56A1 Missense_Mutation p.P8T 0.49 tolerated(0.81) benign(0.01) TCGA-24-1431-01 11 61563597 61563597 G T FEN1 Missense_Mutation p.S255I 0.05 deleterious(0) benign(0.239) TCGA-24-1431-01 11 73849787 73849787 G T C2CD3 Silent p.L311L 0.03 TCGA-24-1431-01 11 92495129 92495129 C A FAT3 Nonsense_Mutation p.Y1259* 0.25 TCGA-24-1431-01 12 108600109 108600109 C A WSCD2 Silent p.A142A 0.06 TCGA-24-1431-01 12 11461282 11461282 T A PRB4 Missense_Mutation p.N212I 0.22 deleterious_low_confidence(0) unknown(0) TCGA-24-1431-01 12 48367088 48367088 T G COL2A1 3'UTR 0.22 TCGA-24-1431-01 12 52452682 52452682 C A NR4A1 Missense_Mutation p.P597H 0.53 deleterious(0) probably_damaging(0.997) TCGA-24-1431-01 12 53457544 53457544 G A TENC1 Missense_Mutation p.A1380T 0.18 deleterious(0) probably_damaging(0.967) TCGA-24-1431-01 12 54803060 54803060 G C ITGA5 Missense_Mutation p.T180R 0.32 tolerated(0.06) benign(0.355) TCGA-24-1431-01 12 56712210 56712210 T C PAN2 Missense_Mutation p.I1129V 0.49 deleterious(0) probably_damaging(0.971) TCGA-24-1431-01 12 62715384 62715384 A G USP15 Silent p.Q205Q 0.06 TCGA-24-1431-01 12 75601654 75601654 A G KCNC2 Missense_Mutation p.L37P 0.12 deleterious(0) probably_damaging(0.992) TCGA-24-1431-01 13 28519454 28519454 G A ATP5EP2 Missense_Mutation p.A20T 0.26 deleterious(0) probably_damaging(0.947) TCGA-24-1431-01 14 105695178 105695178 C G BRF1 Missense_Mutation p.C256S 0.75 tolerated(0.21) benign(0.369) TCGA-24-1431-01 14 96730768 96730768 C T BDKRB1 Missense_Mutation p.A250V 0.70 tolerated(0.56) benign(0.027) TCGA-24-1431-01 15 34651850 34651850 C T LPCAT4 Missense_Mutation p.A447T 0.06 tolerated(0.33) benign(0.11) TCGA-24-1431-01 15 63125721 63125721 G A TLN2 Missense_Mutation p.D2341N 0.23 tolerated(1) benign(0) TCGA-24-1431-01 15 63618506 63618506 A G CA12 Missense_Mutation p.M348T 0.18 tolerated(0.35) benign(0) TCGA-24-1431-01 15 74628259 74628259 A G CCDC33 Intron 0.05 TCGA-24-1431-01 15 81221505 81221505 C A KIAA1199 Missense_Mutation p.P868T 0.06 deleterious(0) probably_damaging(0.99) TCGA-24-1431-01 15 89860094 89860094 C A FANCI 3'UTR 0.42 TCGA-24-1431-01 16 11002997 11002997 G T CIITA Missense_Mutation p.K923N 0.34 tolerated(0.07) benign(0.031) TCGA-24-1431-01 16 20331765 20331765 C T GP2 Missense_Mutation p.C229Y 0.12 deleterious(0) probably_damaging(1) TCGA-24-1431-01 16 30593886 30593886 C A ZNF785 Missense_Mutation p.G405W 0.28 deleterious(0) probably_damaging(0.979) TCGA-24-1431-01 16 3190722 3190722 C T ZNF213 Silent p.L252L 0.77 TCGA-24-1431-01 16 58327680 58327680 C T PRSS54 Missense_Mutation p.R14Q 0.29 tolerated(0.05) possibly_damaging(0.806) TCGA-24-1431-01 16 68325535 68325535 C G SLC7A6 Silent p.G331G 0.02 TCGA-24-1431-01 16 82104623 82104623 C A HSD17B2 Nonsense_Mutation p.Y185* 0.04 TCGA-24-1431-01 17 11757742 11757742 C T DNAH9 Silent p.I3310I 0.07 TCGA-24-1431-01 17 33849320 33849320 G A SLFN12L Nonsense_Mutation p.Q27* 0.07 TCGA-24-1431-01 17 61495768 61495768 G A TANC2 Missense_Mutation p.R1339K 0.48 tolerated(0.06) benign(0.444) TCGA-24-1431-01 17 7229863 7229863 C T NEURL4 Missense_Mutation p.R366H 0.67 deleterious(0) probably_damaging(0.999) TCGA-24-1431-01 17 7251520 7251520 A G ACAP1 Silent p.K496K 0.24 TCGA-24-1431-01 17 74073072 74073072 G T GALR2 Missense_Mutation p.A242S 0.62 deleterious(0.02) probably_damaging(0.968) TCGA-24-1431-01 17 7578275 7578275 G A TP53 Nonsense_Mutation p.Q192* 0.89 TCGA-24-1431-01 19 12738812 12738893 GAAAAACCCTATAAATGTAAACAATGTGGAAAAACCTTCATATATCACCAGCCCTTTCAAAGACATGAGCGGACTCACATTG - ZNF791 Frame_Shift_Del p.P159Nfs*75 0.11 TCGA-24-1431-01 19 12738893 12738894 - GA ZNF791 Frame_Shift_Ins p.P187Nfs*75 0.19 TCGA-24-1431-01 19 12739234 12739235 - AA ZNF791 Frame_Shift_Ins p.P299Nfs*50 0.32 TCGA-24-1431-01 19 19653197 19653197 C G CILP2 Missense_Mutation p.D202E 0.29 deleterious(0.04) benign(0.05) TCGA-24-1431-01 19 45992716 45992716 C T RTN2 Missense_Mutation p.V377M 0.23 deleterious(0) probably_damaging(0.994) TCGA-24-1431-01 19 47151940 47151940 G T DACT3 Silent p.A563A 0.16 TCGA-24-1431-01 19 52724363 52724363 A - PPP2R1A Frame_Shift_Del p.M499* 0.18 TCGA-24-1431-01 19 53644222 53644222 G T ZNF347 Missense_Mutation p.T621N 0.06 deleterious(0.02) possibly_damaging(0.552) TCGA-24-1431-01 19 53762472 53762472 A G VN1R2 Missense_Mutation p.S282G 0.03 tolerated(1) benign(0.081) TCGA-24-1431-01 19 58084491 58084491 G T ZNF416 Missense_Mutation p.Q261K 0.08 tolerated(0.08) benign(0.04) TCGA-24-1431-01 19 9073278 9073278 G A MUC16 Missense_Mutation p.A4723V 0.02 unknown(0) TCGA-24-1431-01 19 9084640 9084640 C T MUC16 Missense_Mutation p.S2392N 0.04 unknown(0) TCGA-24-1431-01 19 9677501 9677501 G C ZNF121 Silent p.A96A 0.96 TCGA-24-1431-01 1 1191490 1191490 C G UBE2J2 Missense_Mutation p.V160L 0.46 tolerated(0.66) benign(0.001) TCGA-24-1431-01 1 12065827 12065827 C A MFN2 Missense_Mutation p.R519S 0.03 tolerated(0.56) possibly_damaging(0.619) TCGA-24-1431-01 1 150239879 150239879 C T APH1A Splice_Site p.X120_splice 0.07 TCGA-24-1431-01 1 150483554 150483554 A G ECM1 Silent p.P223P 0.23 TCGA-24-1431-01 1 152192404 152192404 C A HRNR Missense_Mutation p.R567S 0.28 unknown(0) TCGA-24-1431-01 1 156230371 156230371 T C SMG5 Silent p.E718E 0.31 TCGA-24-1431-01 1 169080710 169080710 C T ATP1B1 Missense_Mutation p.T67I 0.19 deleterious(0.02) benign(0.27) TCGA-24-1431-01 1 196695740 196695740 C A CFH Missense_Mutation p.Q672K 0.16 deleterious(0.01) benign(0.243) TCGA-24-1431-01 1 216692752 216692752 G T ESRRG Missense_Mutation p.L304M 0.03 deleterious(0.01) probably_damaging(1) TCGA-24-1431-01 1 237015827 237015827 T C MTR Silent p.L568L 0.19 TCGA-24-1431-01 1 24077510 24077510 C A TCEB3 Missense_Mutation p.L165I 0.10 tolerated(0.41) benign(0.23) TCGA-24-1431-01 1 247151470 247151470 C T ZNF695 Missense_Mutation p.R116K 0.02 tolerated(1) benign(0.041) TCGA-24-1431-01 1 45307519 45307519 C T PTCH2 Missense_Mutation p.V89M 0.19 tolerated(0.09) benign(0.276) TCGA-24-1431-01 20 36956004 36956004 C T BPI Silent p.S396S 0.16 TCGA-24-1431-01 20 43945519 43945519 G A RBPJL Missense_Mutation p.A492T 0.27 tolerated(0.31) benign(0.002) TCGA-24-1431-01 20 9520153 9520153 G C PAK7 Missense_Mutation p.P706A 0.04 deleterious(0.02) probably_damaging(0.968) TCGA-24-1431-01 21 37605173 37605173 T G DOPEY2 Missense_Mutation p.Y808D 0.09 tolerated(0.24) benign(0.066) TCGA-24-1431-01 22 19902746 19902746 G C TXNRD2 Nonsense_Mutation p.Y194* 0.12 TCGA-24-1431-01 22 44067863 44067863 G A EFCAB6 Missense_Mutation p.H544Y 0.33 tolerated(0.06) benign(0.232) TCGA-24-1431-01 2 179435090 179435090 C A TTN Missense_Mutation p.A25257S 0.18 TCGA-24-1431-01 2 179637955 179637955 T C TTN Missense_Mutation p.K2579R 0.38 TCGA-24-1431-01 2 179637956 179637956 T A TTN Nonsense_Mutation p.K2579* 0.37 TCGA-24-1431-01 2 218925724 218925724 G C CXCR2P1 RNA 0.34 TCGA-24-1431-01 2 219513829 219513829 G A ZNF142 Silent p.L268L 0.53 TCGA-24-1431-01 2 220099841 220099841 G C ANKZF1 Missense_Mutation p.A500P 0.14 deleterious(0) possibly_damaging(0.709) TCGA-24-1431-01 2 27262651 27262651 C A TMEM214 Missense_Mutation p.P523H 0.05 deleterious(0) possibly_damaging(0.784) TCGA-24-1431-01 2 27521466 27521466 C G TRIM54 Missense_Mutation p.S67C 0.37 deleterious(0.01) probably_damaging(0.951) TCGA-24-1431-01 2 56149582 56149582 T C EFEMP1 Intron 0.34 TCGA-24-1431-01 2 61436105 61436105 T C USP34 Missense_Mutation p.R2950G 0.27 deleterious(0.04) benign(0.078) TCGA-24-1431-01 2 64084990 64084990 C T UGP2 Missense_Mutation p.R59W 0.29 tolerated(0.17) benign(0.141) TCGA-24-1431-01 2 80529398 80529398 G T LRRTM1 Missense_Mutation p.P516H 0.16 deleterious(0.01) possibly_damaging(0.819) TCGA-24-1431-01 2 98994220 98994220 G T CNGA3 Missense_Mutation p.A58S 0.24 tolerated_low_confidence(0.57) benign(0.006) TCGA-24-1431-01 3 184102421 184102421 G A CHRD Missense_Mutation p.G513R 0.24 deleterious(0) probably_damaging(1) TCGA-24-1431-01 3 197427629 197427629 C A KIAA0226 Missense_Mutation p.Q372H 0.10 deleterious_low_confidence(0.01) benign(0.009) TCGA-24-1431-01 3 51394487 51394487 T A DOCK3 Missense_Mutation p.V1533E 0.24 tolerated(0.58) benign(0.03) TCGA-24-1431-01 3 52426844 52426844 A T DNAH1 Splice_Site p.X3427_splice 0.48 TCGA-24-1431-01 3 62259432 62259432 A C PTPRG Missense_Mutation p.E1126D 0.48 deleterious(0.04) probably_damaging(0.944) TCGA-24-1431-01 4 8207301 8207301 G A SH3TC1 Intron 0.40 TCGA-24-1431-01 4 8417592 8417592 G A ACOX3 Silent p.V93V 0.24 TCGA-24-1431-01 5 13845038 13845038 C G DNAH5 Missense_Mutation p.E1727Q 0.03 benign(0.007) TCGA-24-1431-01 5 63257368 63257368 G A HTR1A Missense_Mutation p.A60V 0.22 deleterious(0.03) probably_damaging(1) TCGA-24-1431-01 5 75967644 75967644 C T IQGAP2 Silent p.V968V 0.07 TCGA-24-1431-01 5 75979615 75979615 G A IQGAP2 Missense_Mutation p.D1260N 0.78 tolerated(0.17) benign(0.089) TCGA-24-1431-01 5 86686767 86686767 G T RASA1 3'Flank 0.11 TCGA-24-1431-01 6 109285506 109285506 G A ARMC2 Missense_Mutation p.G759D 0.09 deleterious(0) probably_damaging(0.965) TCGA-24-1431-01 6 137479591 137479591 C G IL22RA2 Missense_Mutation p.K30N 0.04 deleterious(0) probably_damaging(0.948) TCGA-24-1431-01 6 14131810 14131810 G A CD83 Silent p.Q71Q 0.09 TCGA-24-1431-01 6 15627696 15627696 C G DTNBP1 Missense_Mutation p.S78T 0.06 tolerated(0.31) benign(0.242) TCGA-24-1431-01 6 158994457 158994457 C T TMEM181 Missense_Mutation p.A142V 0.19 tolerated(0.83) benign(0.184) TCGA-24-1431-01 6 41160551 41160553 TCT - TREML2 In_Frame_Del p.K291del 0.29 TCGA-24-1431-01 6 4125523 4125523 G T ECI2 Silent p.T252T 0.07 TCGA-24-1431-01 6 88224686 88224686 C A RARS2 Nonsense_Mutation p.E547* 0.06 TCGA-24-1431-01 6 99856121 99856121 C T PNISR Missense_Mutation p.A234T 0.12 deleterious(0) probably_damaging(0.999) TCGA-24-1431-01 7 127954888 127954888 C G RBM28 Missense_Mutation p.Q658H 0.05 tolerated(0.69) benign(0.006) TCGA-24-1431-01 7 131151051 131151051 G T MKLN1 Missense_Mutation p.G602V 0.06 deleterious(0) probably_damaging(1) TCGA-24-1431-01 7 140223206 140223206 T G DENND2A Missense_Mutation p.I856L 0.78 tolerated(0.31) possibly_damaging(0.78) TCGA-24-1431-01 7 151850001 151850001 A C KMT2C Silent p.L4105L 0.24 TCGA-24-1431-01 7 30825391 30825391 T A FAM188B Missense_Mutation p.L149H 0.07 tolerated(0.11) possibly_damaging(0.838) TCGA-24-1431-01 7 5096936 5096936 C T RBAK-RBAKDN Missense_Mutation p.S9L 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-24-1431-01 7 794323 794323 G C HEATR2 Silent p.G374G 0.27 TCGA-24-1431-01 7 89854832 89854832 T C STEAP2 Missense_Mutation p.F146L 0.16 tolerated(0.1) possibly_damaging(0.536) TCGA-24-1431-01 7 98563374 98563374 G A TRRAP Silent p.V2337V 0.21 TCGA-24-1431-01 8 119936936 119936936 G T TNFRSF11B Missense_Mutation p.L295I 0.06 deleterious(0) probably_damaging(0.999) TCGA-24-1431-01 8 134042152 134042152 G A TG Missense_Mutation p.G2375R 0.34 deleterious(0) probably_damaging(1) TCGA-24-1431-01 8 72184083 72184083 A G EYA1 Silent p.S292S 0.03 TCGA-24-1431-01 8 97342500 97342500 C A PTDSS1 Missense_Mutation p.H411Q 0.11 tolerated(0.57) benign(0.001) TCGA-24-1431-01 9 127904909 127904909 T C SCAI Intron 0.48 TCGA-24-1431-01 9 15777692 15777692 T C CCDC171 Silent p.C922C 0.07 TCGA-24-1431-01 9 18753427 18753427 G A ADAMTSL1 Missense_Mutation p.R713H 0.44 tolerated(0.31) benign(0.001) TCGA-24-1431-01 9 35092380 35092380 C T PIGO Missense_Mutation p.G502R 0.06 tolerated(0.35) benign(0.024) TCGA-24-1431-01 9 74970928 74970928 C A ZFAND5 Missense_Mutation p.A195S 0.08 deleterious(0) probably_damaging(0.998) TCGA-24-1431-01 9 78911689 78911689 A G PCSK5 Missense_Mutation p.D1144G 0.28 tolerated(0.27) benign(0.009) TCGA-24-1431-01 9 79931298 79931298 C A VPS13A Silent p.V1613V 0.30 TCGA-24-1431-01 9 8317909 8317909 C A PTPRD Nonsense_Mutation p.E1902* 0.05 TCGA-24-1431-01 9 8389323 8389323 A G PTPRD Missense_Mutation p.L1432P 0.03 deleterious(0) probably_damaging(1) TCGA-24-1431-01 X 123663812 123663812 G A TENM1 Silent p.G891G 0.05 TCGA-24-1431-01 X 16887280 16887280 G C RBBP7 Missense_Mutation p.T71R 0.41 deleterious(0) probably_damaging(0.999) TCGA-24-1431-01 X 23723953 23723953 C A ACOT9 Missense_Mutation p.V289F 0.10 deleterious(0.01) possibly_damaging(0.517) TCGA-24-1431-01 X 79285994 79285994 C G TBX22 Intron 0.66 TCGA-25-1319-01 10 128974383 128974383 G A FAM196A Missense_Mutation p.R93C 0.33 deleterious(0.01) possibly_damaging(0.852) TCGA-25-1319-01 10 24874369 24874369 C T ARHGAP21 Missense_Mutation p.D1617N 0.24 deleterious(0.01) possibly_damaging(0.76) TCGA-25-1319-01 10 27702228 27702228 G A PTCHD3 Missense_Mutation p.R318W 0.23 deleterious(0.01) possibly_damaging(0.764) TCGA-25-1319-01 11 67210003 67210003 G A CORO1B Missense_Mutation p.R33C 0.35 deleterious(0) probably_damaging(0.996) TCGA-25-1319-01 12 113706676 113706676 C T TPCN1 Missense_Mutation p.R292C 0.21 deleterious(0) probably_damaging(0.992) TCGA-25-1319-01 12 12491533 12491533 G A MANSC1 Intron 0.32 TCGA-25-1319-01 12 46230406 46230406 G A ARID2 Missense_Mutation p.R247H 0.31 tolerated(0.16) probably_damaging(0.966) TCGA-25-1319-01 12 53207919 53207919 C G KRT4 5'UTR 0.21 TCGA-25-1319-01 12 57501507 57501507 C T STAT6 Missense_Mutation p.D46N 0.23 tolerated(0.67) probably_damaging(0.982) TCGA-25-1319-01 14 104457534 104457534 C T TDRD9 Nonsense_Mutation p.R385* 0.60 TCGA-25-1319-01 14 106866555 106866555 C G IGHV3-38 Missense_Mutation p.V67L 0.22 tolerated_low_confidence(0.13) benign(0.154) TCGA-25-1319-01 14 50735979 50735979 T C L2HGDH Missense_Mutation p.S270G 0.52 deleterious(0.04) probably_damaging(0.991) TCGA-25-1319-01 14 71492844 71492844 G A PCNX Missense_Mutation p.R1065H 0.26 tolerated(0.09) probably_damaging(0.972) TCGA-25-1319-01 15 50901807 50901807 C A TRPM7 Missense_Mutation p.A851S 0.42 deleterious(0) probably_damaging(0.994) TCGA-25-1319-01 16 27720106 27720106 G A KIAA0556 Silent p.S490S 0.26 TCGA-25-1319-01 17 44770403 44770403 C T NSF Silent p.G360G 0.28 TCGA-25-1319-01 17 56084348 56084348 G A SRSF1 Missense_Mutation p.R51C 0.93 tolerated(0.05) benign(0.157) TCGA-25-1319-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.91 deleterious(0) probably_damaging(1) TCGA-25-1319-01 18 11868562 11868562 G A GNAL Missense_Mutation p.V311I 0.40 deleterious(0.02) benign(0.435) TCGA-25-1319-01 18 56411710 56411710 G A MALT1 Missense_Mutation p.V632I 0.22 tolerated(0.21) benign(0.014) TCGA-25-1319-01 19 13226578 13226578 C A TRMT1 Missense_Mutation p.K105N 0.48 tolerated(0.31) benign(0.042) TCGA-25-1319-01 19 13226583 13226583 C T TRMT1 Splice_Site p.X104_splice 0.47 TCGA-25-1319-01 19 15839218 15839218 G A OR10H2 Missense_Mutation p.R122H 0.31 deleterious(0.02) probably_damaging(0.953) TCGA-25-1319-01 19 39019037 39019037 C T RYR1 Missense_Mutation p.T3639M 0.07 benign(0.003) TCGA-25-1319-01 19 50945551 50945551 G A MYBPC2 Missense_Mutation p.E295K 0.38 deleterious(0) probably_damaging(0.947) TCGA-25-1319-01 1 158435388 158435388 G A OR10K1 Missense_Mutation p.V13I 0.19 tolerated(1) benign(0.007) TCGA-25-1319-01 1 235993636 235993636 C T LYST Missense_Mutation p.E28K 0.43 deleterious_low_confidence(0) benign(0.397) TCGA-25-1319-01 1 46159420 46159420 C T TMEM69 Missense_Mutation p.A196V 0.31 deleterious(0) possibly_damaging(0.763) TCGA-25-1319-01 1 6700073 6700073 G A DNAJC11 Missense_Mutation p.T381M 0.40 deleterious(0.01) possibly_damaging(0.644) TCGA-25-1319-01 1 78383899 78383899 G T NEXN Nonsense_Mutation p.E130* 0.26 TCGA-25-1319-01 1 89448770 89448770 C G RBMXL1 Missense_Mutation p.G247A 0.24 deleterious(0.01) possibly_damaging(0.507) TCGA-25-1319-01 20 2605002 2605002 G A TMC2 Missense_Mutation p.A756T 0.21 tolerated(0.31) benign(0.065) TCGA-25-1319-01 20 2774723 2774723 G C CPXM1 3'UTR 0.26 TCGA-25-1319-01 20 32438855 32438855 G A CHMP4B Missense_Mutation p.G156R 0.48 deleterious(0.03) possibly_damaging(0.905) TCGA-25-1319-01 20 60847220 60847220 C T OSBPL2 Missense_Mutation p.P100S 0.22 deleterious(0) probably_damaging(1) TCGA-25-1319-01 22 26100154 26100154 C T ADRBK2 Missense_Mutation p.R436W 0.46 deleterious(0) probably_damaging(0.997) TCGA-25-1319-01 2 114354009 114354009 G T WASH2P RNA 0.07 TCGA-25-1319-01 2 163302673 163302673 A C KCNH7 Missense_Mutation p.F470C 0.25 deleterious(0) probably_damaging(0.986) TCGA-25-1319-01 2 167085346 167085346 G T SCN9A Missense_Mutation p.T1343K 0.31 deleterious(0.03) probably_damaging(0.943) TCGA-25-1319-01 2 204304938 204304938 G A RAPH1 Missense_Mutation p.P992L 0.41 unknown(0) TCGA-25-1319-01 2 219603723 219603723 G T TTLL4 Missense_Mutation p.D442Y 0.26 deleterious(0.02) benign(0.014) TCGA-25-1319-01 2 233243615 233271701 2:233243615-233271701 - ALPP large deletion 0.10 TCGA-25-1319-01 3 147131243 147131243 C A ZIC1 Missense_Mutation p.P417T 0.22 tolerated(0.28) benign(0) TCGA-25-1319-01 3 156421399 156421399 C T TIPARP Silent p.Y478Y 0.43 TCGA-25-1319-01 3 43388910 43388910 G T SNRK Missense_Mutation p.V387F 0.27 tolerated(0.7) possibly_damaging(0.804) TCGA-25-1319-01 3 9470678 9470678 T C SETD5 Missense_Mutation p.M19T 0.21 deleterious(0) possibly_damaging(0.504) TCGA-25-1319-01 4 134073508 134073508 T G PCDH10 Missense_Mutation p.V738G 0.28 deleterious(0) possibly_damaging(0.634) TCGA-25-1319-01 4 185689498 185689498 G A ACSL1 Missense_Mutation p.P367L 0.33 deleterious(0) probably_damaging(0.995) TCGA-25-1319-01 4 69184446 69184446 G A YTHDC1 Nonsense_Mutation p.R575* 0.24 TCGA-25-1319-01 5 129019935 129019935 C T ADAMTS19 Silent p.S923S 0.22 TCGA-25-1319-01 5 140789004 140789004 G A PCDHGB6 Missense_Mutation p.R412Q 0.30 deleterious(0.01) probably_damaging(0.969) TCGA-25-1319-01 5 148207663 148207663 C A ADRB2 3'UTR 0.53 TCGA-25-1319-01 5 169025560 169025560 T G SPDL1 Silent p.L371L 0.29 TCGA-25-1319-01 5 176316506 176316506 C T HK3 Missense_Mutation p.D264N 0.30 tolerated(0.06) probably_damaging(0.969) TCGA-25-1319-01 5 23527677 23527677 C G PRDM9 Missense_Mutation p.T827R 0.10 deleterious(0.01) probably_damaging(0.93) TCGA-25-1319-01 5 59982922 59982922 G T DEPDC1B Missense_Mutation p.Q61K 0.40 tolerated(0.37) benign(0.285) TCGA-25-1319-01 6 42231079 42231079 C T TRERF1 Silent p.S621S 0.35 TCGA-25-1319-01 6 42819929 42819929 C T GLTSCR1L Silent p.L647L 0.44 TCGA-25-1319-01 7 103179742 103179742 C T RELN Silent p.T2321T 0.14 TCGA-25-1319-01 7 142032439 142032439 C G TRBV7-1 Missense_Mutation p.Q87E 0.19 tolerated(1) benign(0.001) TCGA-25-1319-01 7 143792231 143792231 G T OR2A12 Missense_Mutation p.V11F 0.37 tolerated(1) benign(0.001) TCGA-25-1319-01 7 4050614 4050614 G T SDK1 Silent p.V716V 0.22 TCGA-25-1319-01 7 41729271 41729271 C T INHBA Missense_Mutation p.V420M 0.31 deleterious(0) probably_damaging(1) TCGA-25-1319-01 7 93108747 93108747 C T CALCR Missense_Mutation p.V60I 0.28 tolerated(0.31) benign(0.004) TCGA-25-1319-01 8 121432109 121432109 G A MRPL13 Missense_Mutation p.H126Y 0.65 deleterious(0.03) probably_damaging(1) TCGA-25-1319-01 8 121432110 121432110 C A MRPL13 Missense_Mutation p.L125F 0.65 deleterious(0) probably_damaging(0.996) TCGA-25-1319-01 8 125551521 125551521 G T NDUFB9 Missense_Mutation p.V32F 0.09 tolerated(0.7) benign(0.054) TCGA-25-1319-01 8 77766549 77766549 G A ZFHX4 Silent p.S2464S 0.34 TCGA-25-1319-01 8 95186438 95186438 G T CDH17 Missense_Mutation p.P159T 0.28 tolerated(0.1) probably_damaging(0.976) TCGA-25-1319-01 X 100808226 100808226 G C ARMCX1 Missense_Mutation p.E105Q 0.23 tolerated_low_confidence(0.1) probably_damaging(0.986) TCGA-25-1319-01 X 153699459 153699459 G A PLXNA3 Missense_Mutation p.R1723H 0.52 deleterious(0) probably_damaging(0.999) TCGA-25-1319-01 X 30261039 30261039 A C MAGEB4 Missense_Mutation p.S263R 0.24 deleterious(0.01) probably_damaging(0.957) TCGA-25-1319-01 X 44171998 44171998 C T EFHC2 Missense_Mutation p.G16E 0.20 deleterious(0.01) possibly_damaging(0.634) TCGA-25-1319-01 X 62570404 62570404 C A SPIN4 Nonsense_Mutation p.E99* 0.33 TCGA-25-2397-01 10 17275895 17275895 A G VIM Missense_Mutation p.N283D 0.39 deleterious(0) probably_damaging(0.959) TCGA-25-2397-01 10 6258106 6258106 C T PFKFB3 Silent p.A106A 0.05 TCGA-25-2397-01 10 73570298 73570298 G A CDH23 Missense_Mutation p.D777N 0.10 tolerated(0.2) benign(0.02) TCGA-25-2397-01 10 99215801 99215801 G C ZDHHC16 Missense_Mutation p.R340T 0.93 deleterious(0.02) possibly_damaging(0.627) TCGA-25-2397-01 11 119005059 119005059 C G HINFP Missense_Mutation p.Q469E 0.39 tolerated(0.45) benign(0.08) TCGA-25-2397-01 11 119535978 119535978 G T PVRL1 Missense_Mutation p.H345N 0.67 tolerated(0.45) benign(0.002) TCGA-25-2397-01 11 123777899 123777899 C T OR8D4 Missense_Mutation p.S254F 0.28 deleterious(0) probably_damaging(0.977) TCGA-25-2397-01 11 605697 605697 C T PHRF1 Missense_Mutation p.A475V 0.35 deleterious(0) probably_damaging(0.999) TCGA-25-2397-01 12 11338988 11338988 T A TAS2R42 Missense_Mutation p.S186C 0.24 tolerated(0.11) possibly_damaging(0.459) TCGA-25-2397-01 12 11339008 11339008 G C TAS2R42 Missense_Mutation p.S179C 0.22 tolerated(0.11) benign(0.269) TCGA-25-2397-01 12 120180258 120180258 A T CIT Missense_Mutation p.D972E 0.81 tolerated(0.15) possibly_damaging(0.839) TCGA-25-2397-01 12 12240306 12240306 C G BCL2L14 Nonsense_Mutation p.S198* 0.54 TCGA-25-2397-01 12 32138746 32138746 C T KIAA1551 Silent p.T1619T 0.49 TCGA-25-2397-01 12 56600356 56600356 C G RNF41 Missense_Mutation p.A277P 0.89 deleterious(0.02) possibly_damaging(0.89) TCGA-25-2397-01 12 8374698 8374698 G A FAM90A1 Missense_Mutation p.T372I 0.34 tolerated(0.1) possibly_damaging(0.907) TCGA-25-2397-01 14 42356914 42356914 T A LRFN5 Silent p.P362P 0.25 TCGA-25-2397-01 14 45644550 45644550 C G FANCM Missense_Mutation p.Q865E 0.32 tolerated(0.64) benign(0.03) TCGA-25-2397-01 15 43314945 43314945 C - UBR1 Frame_Shift_Del p.A932Lfs*6 0.32 TCGA-25-2397-01 15 54527227 54527227 G T UNC13C Splice_Site p.X1024_splice 0.28 TCGA-25-2397-01 15 74363371 74363372 AT - GOLGA6A Frame_Shift_Del p.Y654* 0.18 TCGA-25-2397-01 16 21848805 21848805 G C NPIPB4 Silent p.L301L 0.28 TCGA-25-2397-01 16 68325433 68325471 AAGTGCCTTTTCTGTGCCCTGCCCCCAGACATTTGCTGA - SLC7A6 Splice_Site p.X307_splice 0.31 TCGA-25-2397-01 17 11583243 11583243 T C DNAH9 Silent p.L1175L 0.39 TCGA-25-2397-01 17 16722310 16722310 C T AC022596.6 RNA 0.33 TCGA-25-2397-01 17 25636254 25636254 A C WSB1 Silent p.V280V 0.60 TCGA-25-2397-01 17 30986192 30986192 C T MYO1D Nonsense_Mutation p.W762* 0.85 TCGA-25-2397-01 17 7577536 7577536 T C TP53 Missense_Mutation p.R249G 0.89 deleterious(0) probably_damaging(0.991) TCGA-25-2397-01 18 77475043 77475043 C A CTDP1 Missense_Mutation p.P528H 0.76 deleterious(0.04) benign(0.268) TCGA-25-2397-01 18 8798189 8798189 G C SOGA2 Missense_Mutation p.C779S 0.40 tolerated(0.06) benign(0.008) TCGA-25-2397-01 19 39028526 39028526 A T RYR1 Missense_Mutation p.K3872M 0.33 benign(0.004) TCGA-25-2397-01 19 51132635 51132651 GCCGATGAGGTCGTGCC - SYT3 Frame_Shift_Del p.R394Pfs*16 0.74 TCGA-25-2397-01 19 54189720 54189720 A C MIR520A 5'Flank 0.36 TCGA-25-2397-01 19 54720835 54720835 C T LILRB3 3'UTR 0.29 TCGA-25-2397-01 19 56953103 56953103 C A ZNF667 Missense_Mutation p.G421W 0.32 deleterious(0) probably_damaging(1) TCGA-25-2397-01 1 11861439 11861439 G C MTHFR Missense_Mutation p.A85G 0.18 tolerated(0.15) benign(0.232) TCGA-25-2397-01 1 152732301 152732301 G T KPRP Missense_Mutation p.K79N 0.44 tolerated(0.23) benign(0.001) TCGA-25-2397-01 1 15771225 15771225 T C CTRC Silent p.D206D 0.26 TCGA-25-2397-01 1 161130839 161130839 G C USP21 Missense_Mutation p.A137P 0.46 deleterious_low_confidence(0.03) benign(0.401) TCGA-25-2397-01 1 161163544 161163544 G A ADAMTS4 Nonsense_Mutation p.Q541* 0.37 TCGA-25-2397-01 1 167096082 167096082 G T DUSP27 Missense_Mutation p.A572S 0.53 tolerated(0.21) benign(0.08) TCGA-25-2397-01 1 197061153 197061153 G C ASPM Missense_Mutation p.H3110D 0.34 deleterious(0.05) possibly_damaging(0.544) TCGA-25-2397-01 1 29650280 29650280 G A PTPRU Silent p.G1374G 0.28 TCGA-25-2397-01 1 85787007 85787007 C G DDAH1 3'UTR 0.36 TCGA-25-2397-01 20 31583501 31583501 C A SUN5 Missense_Mutation p.G153V 0.43 tolerated(0.12) probably_damaging(0.987) TCGA-25-2397-01 20 43929514 43929530 GCCCATCACTCACGGTT - MATN4 Splice_Site p.X337_splice 0.38 TCGA-25-2397-01 21 11058323 11058323 G A BAGE2 Intron 0.06 TCGA-25-2397-01 21 31062155 31062155 A G GRIK1 Missense_Mutation p.F146S 0.44 deleterious(0) possibly_damaging(0.567) TCGA-25-2397-01 21 33651261 33651261 T A MIS18A Missense_Mutation p.K22M 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.73) TCGA-25-2397-01 2 187693058 187693058 G A ZSWIM2 Missense_Mutation p.H519Y 0.35 tolerated(0.23) benign(0.002) TCGA-25-2397-01 2 219251451 219251451 C A SLC11A1 Missense_Mutation p.L163I 0.45 deleterious(0.02) benign(0.098) TCGA-25-2397-01 2 225661100 225661100 C G DOCK10 Missense_Mutation p.G1624A 0.50 deleterious(0) probably_damaging(0.999) TCGA-25-2397-01 2 55898475 55898475 C G PNPT1 Missense_Mutation p.D319H 0.39 tolerated(0.09) benign(0.02) TCGA-25-2397-01 2 71360051 71360051 A T MPHOSPH10 Missense_Mutation p.K38M 0.49 deleterious(0.01) possibly_damaging(0.704) TCGA-25-2397-01 2 86718009 86718013 AGAAG - KDM3A Frame_Shift_Del p.E1194Afs*14 0.32 TCGA-25-2397-01 3 113955455 113955455 G T ZNF80 Missense_Mutation p.T156N 0.36 deleterious(0.04) benign(0.163) TCGA-25-2397-01 3 134322972 134322972 G A KY Missense_Mutation p.R479C 0.33 tolerated(0.14) benign(0.214) TCGA-25-2397-01 3 151163655 151163655 T A IGSF10 Missense_Mutation p.T1372S 0.42 tolerated(0.28) benign(0.005) TCGA-25-2397-01 3 160395291 160395291 G A ARL14 Missense_Mutation p.E53K 0.10 deleterious(0.04) benign(0.317) TCGA-25-2397-01 3 161221343 161221343 G C OTOL1 Missense_Mutation p.L349F 0.45 deleterious(0) probably_damaging(0.998) TCGA-25-2397-01 3 170879112 170879112 A C TNIK Nonsense_Mutation p.Y321* 0.53 TCGA-25-2397-01 3 186980355 186980355 A T MASP1 Missense_Mutation p.F131I 0.31 deleterious(0) probably_damaging(1) TCGA-25-2397-01 3 25542776 25542776 G A RARB Missense_Mutation p.R137Q 0.05 deleterious(0) benign(0.379) TCGA-25-2397-01 3 44488257 44488257 T C ZNF445 Missense_Mutation p.Q969R 0.04 deleterious(0) benign(0.069) TCGA-25-2397-01 3 45436066 45436066 T A LARS2 Missense_Mutation p.Y41N 0.24 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-25-2397-01 3 48465170 48465170 G T PLXNB1 Missense_Mutation p.S284Y 0.25 tolerated(0.63) benign(0.389) TCGA-25-2397-01 4 106600413 106600413 G C ARHGEF38 3'UTR 0.43 TCGA-25-2397-01 4 107846967 107846967 C T DKK2 Missense_Mutation p.R121H 0.35 tolerated(0.44) probably_damaging(0.997) TCGA-25-2397-01 5 102353104 102353104 A G PAM Missense_Mutation p.T800A 0.86 tolerated(1) benign(0) TCGA-25-2397-01 5 161569237 161569237 C A GABRG2 Silent p.T319T 0.19 TCGA-25-2397-01 5 169689718 169689718 G C LCP2 Missense_Mutation p.Q283E 0.76 tolerated(0.33) benign(0.075) TCGA-25-2397-01 5 175798882 175798882 T G ARL10 Missense_Mutation p.L240W 0.71 deleterious(0) probably_damaging(0.998) TCGA-25-2397-01 5 6378579 6378579 G T MED10 Missense_Mutation p.D6E 0.27 tolerated(1) probably_damaging(0.967) TCGA-25-2397-01 6 24415279 24415279 A C MRS2 Missense_Mutation p.K203Q 0.32 tolerated(0.19) benign(0.248) TCGA-25-2397-01 6 34003643 34003643 G T GRM4 Silent p.I748I 0.23 TCGA-25-2397-01 6 70909413 70909413 G C COL19A1 Missense_Mutation p.G1066R 0.66 deleterious(0) probably_damaging(1) TCGA-25-2397-01 7 102098029 102098029 G C ALKBH4 Missense_Mutation p.L241V 0.26 deleterious(0.03) probably_damaging(0.967) TCGA-25-2397-01 7 149515042 149515042 A G SSPO RNA 0.91 TCGA-25-2397-01 7 149517861 149517861 T G SSPO RNA 0.49 TCGA-25-2397-01 7 37903980 37903980 C T NME8 Missense_Mutation p.P162L 0.25 deleterious(0) probably_damaging(1) TCGA-25-2397-01 7 76924014 76924014 A G CCDC146 Missense_Mutation p.N900S 0.39 tolerated(0.51) benign(0.008) TCGA-25-2397-01 7 80299328 80299328 G A CD36 Missense_Mutation p.D270N 0.40 deleterious(0) probably_damaging(0.984) TCGA-25-2397-01 8 145138051 145138051 C T GPAA1 Silent p.I33I 0.25 TCGA-25-2397-01 8 26614212 26614212 T C ADRA1A Intron 0.27 TCGA-25-2397-01 8 59728142 59728142 G C TOX Missense_Mutation p.P383A 0.41 tolerated(0.07) probably_damaging(0.98) TCGA-25-2397-01 9 130868089 130868089 T A SLC25A25 Missense_Mutation p.W277R 0.45 deleterious(0) probably_damaging(0.937) TCGA-25-2397-01 9 33026910 33026910 G C DNAJA1 Missense_Mutation p.G78R 0.33 deleterious(0.03) benign(0.269) TCGA-25-2397-01 9 82336789 82336789 G A TLE4 Missense_Mutation p.D658N 0.47 deleterious(0.01) probably_damaging(0.995) TCGA-25-2397-01 X 107320448 107320448 C G VSIG1 Missense_Mutation p.P370R 0.54 deleterious_low_confidence(0.04) unknown(0) TCGA-25-2398-01 10 104176300 104176300 C T PSD Missense_Mutation p.A166T 0.29 tolerated_low_confidence(0.23) benign(0.001) TCGA-25-2398-01 10 30316939 30316939 G C KIAA1462 Missense_Mutation p.P713R 0.14 tolerated(0.56) benign(0.311) TCGA-25-2398-01 10 30656751 30656751 C T AL161651.1 5'Flank 0.10 TCGA-25-2398-01 10 3174604 3174604 G C PFKP Missense_Mutation p.K627N 0.13 deleterious(0.01) possibly_damaging(0.704) TCGA-25-2398-01 10 51225033 51225033 A T AGAP8 Missense_Mutation p.I650N 0.10 deleterious(0.05) possibly_damaging(0.842) TCGA-25-2398-01 10 75553688 75553688 G A ZSWIM8 Silent p.A837A 0.19 TCGA-25-2398-01 11 1096417 1096417 G A MUC2 Missense_Mutation p.E2148K 0.10 unknown(0) TCGA-25-2398-01 11 117093978 117093978 A - PCSK7 Frame_Shift_Del p.C367Wfs*20 0.21 TCGA-25-2398-01 11 124743233 124743233 G A ROBO3 Missense_Mutation p.V522M 0.18 deleterious(0.04) probably_damaging(0.992) TCGA-25-2398-01 11 31099428 31099428 C A DCDC1 Missense_Mutation p.G761V 0.09 deleterious(0) benign(0.25) TCGA-25-2398-01 11 62040523 62040523 C T SCGB2A2 3'UTR 0.28 TCGA-25-2398-01 11 6816144 6816144 G A OR6A2 Missense_Mutation p.R266W 0.33 deleterious(0.04) probably_damaging(1) TCGA-25-2398-01 11 76905436 76905436 T G MYO7A Missense_Mutation p.F1397C 0.17 deleterious(0) possibly_damaging(0.819) TCGA-25-2398-01 12 54970410 54970410 G A PDE1B Missense_Mutation p.V478M 0.11 deleterious(0.03) benign(0.015) TCGA-25-2398-01 12 56817082 56817082 A G TIMELESS Silent p.S756S 0.13 TCGA-25-2398-01 12 8990997 8990997 G A A2ML1 Silent p.A307A 0.16 TCGA-25-2398-01 13 28011388 28011388 C A MTIF3 Silent p.L161L 0.14 TCGA-25-2398-01 13 39586999 39586999 G C PROSER1 Missense_Mutation p.P797R 0.10 deleterious(0.01) possibly_damaging(0.699) TCGA-25-2398-01 14 106866613 106866613 G A IGHV3-38 Silent p.T47T 0.24 TCGA-25-2398-01 14 38724433 38724433 G C CLEC14A Missense_Mutation p.D265E 0.19 tolerated(0.58) benign(0.009) TCGA-25-2398-01 14 64689908 64689908 A C SYNE2 Missense_Mutation p.Q6731P 0.18 possibly_damaging(0.849) TCGA-25-2398-01 15 28228549 28228549 G C OCA2 Missense_Mutation p.T482S 0.29 deleterious(0) probably_damaging(0.998) TCGA-25-2398-01 15 33926788 33926788 A G RYR3 Missense_Mutation p.D1010G 0.13 probably_damaging(0.99) TCGA-25-2398-01 15 41276060 41276060 G A INO80 Silent p.D1379D 0.38 TCGA-25-2398-01 16 27460252 27460252 G A IL21R Missense_Mutation p.G422E 0.18 tolerated(0.35) benign(0.022) TCGA-25-2398-01 16 4718285 4718285 C T MGRN1 Missense_Mutation p.S233F 0.22 tolerated(0.07) probably_damaging(1) TCGA-25-2398-01 16 53504077 53504077 C T RBL2 Missense_Mutation p.T742M 0.18 deleterious(0.02) probably_damaging(0.943) TCGA-25-2398-01 16 72133637 72133638 GA T DHX38 Frame_Shift_Del p.D323Ffs*6 0.39 TCGA-25-2398-01 17 16722229 16722229 C T AC022596.6 RNA 0.37 TCGA-25-2398-01 17 72363841 72363841 G A GPR142 Nonsense_Mutation p.W66* 0.24 TCGA-25-2398-01 18 56203552 56203552 G A ALPK2 Silent p.A1289A 0.14 TCGA-25-2398-01 18 580898 580898 C T CETN1 Missense_Mutation p.R164W 0.26 deleterious(0.02) benign(0.128) TCGA-25-2398-01 18 71740792 71740792 C A FBXO15 Silent p.L479L 0.17 TCGA-25-2398-01 19 11891822 11891822 G C ZNF441 Missense_Mutation p.E395Q 0.34 tolerated(1) possibly_damaging(0.728) TCGA-25-2398-01 19 13220216 13220216 G A TRMT1 Missense_Mutation p.T459I 0.28 tolerated(0.11) benign(0.159) TCGA-25-2398-01 19 19338833 19338833 C T NCAN Missense_Mutation p.P802S 0.20 tolerated(0.16) benign(0.444) TCGA-25-2398-01 19 20308856 20308856 C T ZNF486 Missense_Mutation p.S446F 0.15 tolerated(0.21) possibly_damaging(0.641) TCGA-25-2398-01 19 36526310 36526310 C G THAP8 3'UTR 0.12 TCGA-25-2398-01 19 38933062 38933062 T A RYR1 Missense_Mutation p.M80K 0.08 benign(0.188) TCGA-25-2398-01 19 39221770 39221770 A G CAPN12 Missense_Mutation p.V684A 0.24 tolerated(0.38) benign(0.001) TCGA-25-2398-01 19 47422700 47422700 C T ARHGAP35 Silent p.I256I 0.15 TCGA-25-2398-01 19 47422896 47422896 C T ARHGAP35 Silent p.L322L 0.23 TCGA-25-2398-01 19 47423092 47423092 C T ARHGAP35 Missense_Mutation p.P387L 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-25-2398-01 19 47423109 47423109 C T ARHGAP35 Missense_Mutation p.H393Y 0.16 tolerated(0.11) probably_damaging(0.995) TCGA-25-2398-01 19 47423117 47423117 C T ARHGAP35 Silent p.D395D 0.18 TCGA-25-2398-01 19 47423162 47423162 C T ARHGAP35 Silent p.V410V 0.17 TCGA-25-2398-01 19 47423186 47423186 C T ARHGAP35 Silent p.A418A 0.16 TCGA-25-2398-01 19 47423274 47423274 C T ARHGAP35 Missense_Mutation p.P448S 0.20 deleterious(0) probably_damaging(0.999) TCGA-25-2398-01 19 47423275 47423275 C T ARHGAP35 Missense_Mutation p.P448L 0.19 deleterious(0) probably_damaging(0.999) TCGA-25-2398-01 19 47423688 47423688 C T ARHGAP35 Nonsense_Mutation p.Q586* 0.31 TCGA-25-2398-01 19 47502565 47502565 C - ARHGAP35 Frame_Shift_Del p.N1348Tfs*14 0.32 TCGA-25-2398-01 19 53208487 53208487 T A ZNF611 Silent p.S607S 0.22 TCGA-25-2398-01 19 58265193 58265193 G C ZNF776 Missense_Mutation p.R232T 0.24 tolerated(0.18) benign(0.271) TCGA-25-2398-01 19 6495297 6495297 C T TUBB4A Missense_Mutation p.E405K 0.17 deleterious_low_confidence(0.02) benign(0.095) TCGA-25-2398-01 1 153659765 153659765 G A NPR1 Silent p.K675K 0.31 TCGA-25-2398-01 1 183101586 183101587 - A LAMC1 Frame_Shift_Ins p.T1207Nfs*4 0.17 TCGA-25-2398-01 1 40007493 40007493 T C PPIEL RNA 0.29 TCGA-25-2398-01 1 43149119 43149119 G T YBX1 Missense_Mutation p.G71V 0.14 deleterious(0) benign(0.042) TCGA-25-2398-01 1 8000029 8000029 A T TNFRSF9 Missense_Mutation p.V9E 0.42 deleterious(0.05) benign(0.099) TCGA-25-2398-01 20 3026885 3026885 G A MRPS26 Missense_Mutation p.M57I 0.15 tolerated(0.12) benign(0.023) TCGA-25-2398-01 20 52192307 52192307 C G ZNF217 Missense_Mutation p.C999S 0.36 tolerated(0.14) benign(0.232) TCGA-25-2398-01 20 62366049 62366049 T C ZGPAT Silent p.S308S 0.05 TCGA-25-2398-01 22 29537934 29537934 C T KREMEN1 Missense_Mutation p.S421F 0.56 deleterious_low_confidence(0) possibly_damaging(0.747) TCGA-25-2398-01 22 31679151 31679151 C G PIK3IP1 Silent p.V237V 0.69 TCGA-25-2398-01 3 101050938 101050938 G A SENP7 Silent p.L863L 0.15 TCGA-25-2398-01 3 15084546 15084546 G A NR2C2 3'UTR 0.24 TCGA-25-2398-01 3 184001640 184001640 C T ECE2 Missense_Mutation p.T413M 0.16 deleterious(0) possibly_damaging(0.767) TCGA-25-2398-01 3 186839088 186839088 T C RPL39L Translation_Start_Site p.M1? 0.11 deleterious(0.04) probably_damaging(0.914) TCGA-25-2398-01 3 50392684 50392684 C T TMEM115 3'UTR 0.27 TCGA-25-2398-01 5 140048817 140048817 A C WDR55 Missense_Mutation p.T272P 0.24 tolerated(0.13) benign(0.37) TCGA-25-2398-01 6 30105087 30105087 G C TRIM40 Missense_Mutation p.E92Q 0.06 tolerated(0.17) benign(0.091) TCGA-25-2398-01 6 30121658 30121658 C T TRIM10 3'UTR 0.08 TCGA-25-2398-01 6 30121747 30121747 C G TRIM10 Nonstop_Mutation p.*482Sext*34 0.07 TCGA-25-2398-01 6 30121977 30121977 C T TRIM10 Silent p.V405V 0.11 TCGA-25-2398-01 6 30124820 30124820 C A TRIM10 Missense_Mutation p.R264I 0.09 deleterious(0.04) possibly_damaging(0.514) TCGA-25-2398-01 6 30954260 30954260 G A MUC21 Missense_Mutation p.S103N 0.07 deleterious(0.01) unknown(0) TCGA-25-2398-01 6 30954433 30954433 G A MUC21 Missense_Mutation p.E161K 0.06 tolerated(0.32) unknown(0) TCGA-25-2398-01 6 30955776 30955776 G C MUC21 Splice_Site p.X503_splice 0.06 TCGA-25-2398-01 6 30955794 30955794 G A MUC21 Silent p.L508L 0.07 TCGA-25-2398-01 7 142625188 142625188 G T TRPV5 Silent p.R302R 0.22 TCGA-25-2398-01 7 148951470 148951470 G A ZNF212 Silent p.L484L 0.10 TCGA-25-2398-01 7 37780789 37780789 A G GPR141 Missense_Mutation p.Y265C 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-25-2398-01 7 72418750 72418750 C G POM121 Intron 0.19 TCGA-25-2398-01 7 77885616 77885616 C T MAGI2 Missense_Mutation p.R564Q 0.13 tolerated(0.74) benign(0.011) TCGA-25-2398-01 9 136287670 136287670 T C ADAMTS13 Splice_Site p.X35_splice 0.18 TCGA-25-2398-01 9 71395727 71395727 G A FAM122A Missense_Mutation p.R216K 0.05 tolerated(0.29) probably_damaging(0.999) TCGA-25-2398-01 X 100912140 100912140 C T ARMCX2 Silent p.V145V 0.27 TCGA-29-2429-01 10 16553185 16553185 G T PTER Missense_Mutation p.R327I 0.25 deleterious(0) probably_damaging(0.999) TCGA-29-2429-01 10 52566565 52566566 AA - A1CF Frame_Shift_Del p.L570Sfs*7 0.20 TCGA-29-2429-01 10 52580322 52580322 A - A1CF Frame_Shift_Del p.L294* 0.26 TCGA-29-2429-01 10 78651338 78651344 TCCCTAT - KCNMA1 Frame_Shift_Del p.N1077Tfs*8 0.59 TCGA-29-2429-01 11 108180907 108180907 T G ATM Missense_Mutation p.F1928C 0.24 tolerated(0.33) benign(0.008) TCGA-29-2429-01 11 123909523 123909523 G T OR10G7 Silent p.T62T 0.18 TCGA-29-2429-01 11 125830873 125830873 G T CDON Missense_Mutation p.S1276R 0.21 deleterious_low_confidence(0.02) benign(0.398) TCGA-29-2429-01 11 134131645 134131645 C T ACAD8 Missense_Mutation p.T318I 0.21 deleterious(0) benign(0.176) TCGA-29-2429-01 11 49597897 49597897 G T RP11-707M1.1 RNA 0.17 TCGA-29-2429-01 11 5276216 5276216 C T HBG2 5'UTR 0.33 TCGA-29-2429-01 11 65810697 65810697 C T GAL3ST3 Missense_Mutation p.A193T 0.30 tolerated(0.22) benign(0.081) TCGA-29-2429-01 11 68514684 68514684 T A MTL5 Missense_Mutation p.N208Y 0.28 deleterious(0) possibly_damaging(0.885) TCGA-29-2429-01 11 68707039 68707039 G A IGHMBP2 Missense_Mutation p.R941Q 0.29 deleterious(0) probably_damaging(0.983) TCGA-29-2429-01 11 76979561 76979561 C T GDPD4 Missense_Mutation p.M216I 0.29 deleterious(0) possibly_damaging(0.846) TCGA-29-2429-01 12 105151233 105151233 C T CHST11 Silent p.F237F 0.23 TCGA-29-2429-01 12 115117724 115117724 A G TBX3 Silent p.G237G 0.21 TCGA-29-2429-01 12 21962857 21962858 - C ABCC9 Frame_Shift_Ins p.D1415Gfs*2 0.23 TCGA-29-2429-01 12 53509382 53509382 G A SOAT2 Missense_Mutation p.V218M 0.27 tolerated(0.11) benign(0.191) TCGA-29-2429-01 12 54943554 54943554 C T PDE1B Intron 0.38 TCGA-29-2429-01 12 66308715 66308715 A G HMGA2 Intron 0.32 TCGA-29-2429-01 12 91539797 91539797 A T DCN 3'UTR 0.30 TCGA-29-2429-01 13 45723918 45723918 A C GTF2F2 Missense_Mutation p.T52P 0.10 tolerated(0.5) benign(0.002) TCGA-29-2429-01 14 51225138 51225138 C G NIN Silent p.A870A 0.29 TCGA-29-2429-01 14 77746808 77746808 T A POMT2 Splice_Site p.X552_splice 0.12 TCGA-29-2429-01 14 86089206 86089206 T C FLRT2 Missense_Mutation p.Y450H 0.28 deleterious(0) probably_damaging(0.936) TCGA-29-2429-01 14 90770317 90770317 G A NRDE2 Missense_Mutation p.R323W 0.47 tolerated(0.12) benign(0.022) TCGA-29-2429-01 14 93264220 93264220 G C GOLGA5 Missense_Mutation p.K146N 0.49 tolerated(0.11) benign(0.265) TCGA-29-2429-01 15 28474390 28474390 C T HERC2 Silent p.Q1741Q 0.22 TCGA-29-2429-01 15 44951409 44951409 G A SPG11 Missense_Mutation p.P179S 0.32 tolerated(0.14) probably_damaging(0.986) TCGA-29-2429-01 15 62948201 62948201 G A TLN2 Silent p.T192T 0.31 TCGA-29-2429-01 15 85165241 85165241 G C ZSCAN2 Missense_Mutation p.Q605H 0.21 deleterious(0.01) probably_damaging(0.947) TCGA-29-2429-01 16 19127323 19127323 C A ITPRIPL2 Missense_Mutation p.R514S 0.20 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-29-2429-01 16 31409190 31409190 G A ITGAD Silent p.S129S 0.23 TCGA-29-2429-01 16 71096188 71096188 C A HYDIN Missense_Mutation p.G754W 0.31 probably_damaging(0.999) TCGA-29-2429-01 17 1636852 1636852 C A WDR81 Missense_Mutation p.H1507Q 0.19 deleterious(0) probably_damaging(0.998) TCGA-29-2429-01 17 18003900 18003900 C A DRG2 Silent p.G186G 0.27 TCGA-29-2429-01 17 18139976 18139976 C T LLGL1 Missense_Mutation p.L470F 0.30 deleterious(0) probably_damaging(0.964) TCGA-29-2429-01 17 21117510 21117510 C T TMEM11 5'UTR 0.25 TCGA-29-2429-01 17 47295147 47295147 C G ABI3 Missense_Mutation p.T111S 0.71 tolerated(0.26) benign(0.216) TCGA-29-2429-01 17 4923836 4923836 G A KIF1C Silent p.P600P 0.23 TCGA-29-2429-01 17 7578530 7578553 ACATCTTGTTGAGGGCAGGGGAGT - TP53 In_Frame_Del p.Y126_M133del 0.66 TCGA-29-2429-01 18 43223964 43223964 C G SLC14A2 Missense_Mutation p.P397R 0.26 deleterious(0.02) benign(0.197) TCGA-29-2429-01 19 13084645 13084645 G A DAND5 3'UTR 0.78 TCGA-29-2429-01 19 14877071 14877071 C T EMR2 Missense_Mutation p.G204S 0.08 tolerated(0.1) possibly_damaging(0.819) TCGA-29-2429-01 19 15366124 15366124 C T BRD4 Silent p.K677K 0.10 TCGA-29-2429-01 19 18054154 18054154 G A CCDC124 Missense_Mutation p.R145H 0.06 deleterious(0) probably_damaging(0.973) TCGA-29-2429-01 19 20807109 20807109 A C ZNF626 Missense_Mutation p.L525R 0.21 deleterious_low_confidence(0) benign(0.047) TCGA-29-2429-01 19 33608855 33608855 G C GPATCH1 Missense_Mutation p.G774A 0.14 tolerated(0.24) benign(0.08) TCGA-29-2429-01 19 47197271 47197271 G A PRKD2 Silent p.G479G 0.26 TCGA-29-2429-01 1 151403146 151403146 G C POGZ Missense_Mutation p.T152R 0.26 deleterious(0) possibly_damaging(0.895) TCGA-29-2429-01 1 151773709 151773709 C G LINGO4 Missense_Mutation p.G491A 0.28 deleterious(0) probably_damaging(0.998) TCGA-29-2429-01 1 154998856 154998857 - A DCST2 Frame_Shift_Ins p.F512Lfs*57 0.12 TCGA-29-2429-01 1 156347189 156347189 C T RHBG Silent p.L95L 0.33 TCGA-29-2429-01 1 158064749 158064749 C T KIRREL Nonsense_Mutation p.R705* 0.15 TCGA-29-2429-01 1 158435980 158435980 C T OR10K1 Missense_Mutation p.P210L 0.19 deleterious(0) probably_damaging(1) TCGA-29-2429-01 1 158549276 158549276 G T OR10X1 Silent p.R138R 0.34 TCGA-29-2429-01 1 17326759 17326759 C A ATP13A2 Missense_Mutation p.V297L 0.29 deleterious(0.02) benign(0.212) TCGA-29-2429-01 1 32841929 32841929 C G BSDC1 Missense_Mutation p.D381H 0.31 deleterious(0) probably_damaging(0.998) TCGA-29-2429-01 1 35658672 35658672 G A SFPQ 5'UTR 0.20 TCGA-29-2429-01 1 38463061 38463061 G T FHL3 3'UTR 0.38 TCGA-29-2429-01 1 42048869 42048869 G T HIVEP3 Missense_Mutation p.P534T 0.29 possibly_damaging(0.621) TCGA-29-2429-01 1 70385045 70385045 G A LRRC7 Intron 0.25 TCGA-29-2429-01 1 85331490 85331490 C T LPAR3 Missense_Mutation p.R105H 0.30 deleterious(0.01) probably_damaging(1) TCGA-29-2429-01 1 87558290 87558290 T G HS2ST1 Missense_Mutation p.F176V 0.31 deleterious(0) probably_damaging(0.965) TCGA-29-2429-01 20 21376927 21376927 C A NKX2-4 Silent p.T229T 0.22 TCGA-29-2429-01 20 24973361 24973361 A T APMAP 5'UTR 0.33 TCGA-29-2429-01 20 31590698 31590698 G A SUN5 Silent p.S35S 0.17 TCGA-29-2429-01 20 35509093 35509093 C G TLDC2 Silent p.L126L 0.19 TCGA-29-2429-01 20 43995882 43995882 G C SYS1 3'UTR 0.09 TCGA-29-2429-01 20 51873061 51873061 G A TSHZ2 Missense_Mutation p.E1022K 0.17 deleterious(0) probably_damaging(0.998) TCGA-29-2429-01 21 35821633 35821633 C G KCNE1 Silent p.L100L 0.30 TCGA-29-2429-01 2 166231449 166231449 A G SCN2A Silent p.G1409G 0.15 TCGA-29-2429-01 2 166243403 166243403 A G SCN2A Missense_Mutation p.N1567D 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-29-2429-01 2 166897912 166897912 C T SCN1A Nonsense_Mutation p.W748* 0.15 TCGA-29-2429-01 2 167160544 167160544 G C SCN9A Intron 0.17 TCGA-29-2429-01 2 172379005 172379005 G A CYBRD1 5'UTR 0.10 TCGA-29-2429-01 2 179629408 179629408 C A TTN Silent p.L3278L 0.17 TCGA-29-2429-01 2 48915091 48915091 A T LHCGR Missense_Mutation p.N615K 0.26 deleterious(0) probably_damaging(1) TCGA-29-2429-01 3 111368636 111368636 G A CD96 Missense_Mutation p.E581K 0.26 deleterious(0) probably_damaging(0.994) TCGA-29-2429-01 3 121341365 121341365 T C FBXO40 Silent p.L363L 0.22 TCGA-29-2429-01 3 129155581 129155581 C G MBD4 Silent p.V302V 0.25 TCGA-29-2429-01 3 168802657 168802657 A C MECOM 3'UTR 0.27 TCGA-29-2429-01 3 172538037 172538078 AAAATCTTAAATTATAGAAATGTATAGACACCTCATACTCAA - ECT2 3'UTR 0.14 TCGA-29-2429-01 3 182756855 182756855 C T MCCC1 Missense_Mutation p.A446T 0.34 tolerated(0.3) benign(0.189) TCGA-29-2429-01 3 184052592 184052592 A G EIF4G1 Missense_Mutation p.S1573G 0.17 deleterious(0) possibly_damaging(0.705) TCGA-29-2429-01 3 38793864 38793864 C T SCN10A Missense_Mutation p.R534Q 0.34 tolerated(0.06) benign(0.006) TCGA-29-2429-01 3 48040250 48040250 A C MAP4 Missense_Mutation p.F34C 0.28 deleterious(0) probably_damaging(0.91) TCGA-29-2429-01 4 40440207 40440207 A T RBM47 Missense_Mutation p.I235N 0.25 tolerated(0.45) possibly_damaging(0.51) TCGA-29-2429-01 4 94693633 94693633 G C GRID2 Missense_Mutation p.R1003P 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.852) TCGA-29-2429-01 5 115339037 115339037 G C AQPEP Missense_Mutation p.G666A 0.18 deleterious(0.03) probably_damaging(0.974) TCGA-29-2429-01 5 39383170 39383170 G A DAB2 Silent p.D297D 0.31 TCGA-29-2429-01 5 77524010 77524010 A T AP3B1 Missense_Mutation p.D111E 0.24 deleterious(0.01) possibly_damaging(0.852) TCGA-29-2429-01 5 98207755 98207755 C T CHD1 Silent p.K1287K 0.15 TCGA-29-2429-01 6 108366015 108366015 C A OSTM1 Missense_Mutation p.A327S 0.30 deleterious(0.05) possibly_damaging(0.885) TCGA-29-2429-01 6 117686365 117686365 G C ROS1 Missense_Mutation p.F992L 0.28 tolerated(0.67) benign(0.004) TCGA-29-2429-01 6 129419451 129419451 T C LAMA2 Missense_Mutation p.L177P 0.28 deleterious(0) probably_damaging(0.98) TCGA-29-2429-01 6 137019804 137019804 T C MAP3K5 Missense_Mutation p.Y210C 0.26 deleterious(0) probably_damaging(0.999) TCGA-29-2429-01 6 2890404 2890404 G A SERPINB9 Missense_Mutation p.S375L 0.12 deleterious(0.01) probably_damaging(0.916) TCGA-29-2429-01 6 30309877 30309877 C T TRIM39 Silent p.A466A 0.48 TCGA-29-2429-01 6 31937743 31937743 C G DXO Missense_Mutation p.D368H 0.18 deleterious(0) possibly_damaging(0.791) TCGA-29-2429-01 6 31962423 31962423 T C C4A Missense_Mutation p.V914A 0.13 deleterious(0.01) benign(0.055) TCGA-29-2429-01 7 134346212 134346212 C G BPGM 5'UTR 0.16 TCGA-29-2429-01 7 42006013 42006013 C T GLI3 Silent p.P886P 0.27 TCGA-29-2429-01 7 73183985 73183985 A G CLDN3 Missense_Mutation p.L132P 0.19 deleterious(0) probably_damaging(0.998) TCGA-29-2429-01 7 73183987 73183987 G T CLDN3 Silent p.T131T 0.18 TCGA-29-2429-01 7 73483220 73483220 G C ELN 3'UTR 0.15 TCGA-29-2429-01 8 145135279 145135279 G A EXOSC4 Silent p.A171A 0.12 TCGA-29-2429-01 8 26484731 26484731 A G DPYSL2 Missense_Mutation p.I181V 0.36 deleterious(0.02) benign(0.001) TCGA-29-2429-01 8 33319027 33319027 G C FUT10 5'UTR 0.12 TCGA-29-2429-01 9 15468838 15468838 G C PSIP1 Missense_Mutation p.R404G 0.21 deleterious(0) probably_damaging(0.995) TCGA-29-2429-01 X 106016295 106016295 G C RNF128 Missense_Mutation p.V213L 0.37 deleterious(0.01) probably_damaging(0.994) TCGA-29-2429-01 X 31187671 31187671 T C DMD Missense_Mutation p.Q3481R 0.32 benign(0.145) TCGA-29-2431-01 10 103826522 103826522 A G HPS6 Missense_Mutation p.T431A 0.14 tolerated(0.35) benign(0.107) TCGA-29-2431-01 10 17195362 17195363 - AA TRDMT1 Intron 0.19 TCGA-29-2431-01 10 73510821 73510821 C T C10orf54 3'UTR 0.25 TCGA-29-2431-01 10 75434369 75434369 G A AGAP5 Silent p.D683D 0.27 TCGA-29-2431-01 10 93902837 93902837 C G CPEB3 Missense_Mutation p.V468L 0.04 tolerated(0.09) benign(0.199) TCGA-29-2431-01 11 111229592 111229592 C T POU2AF1 Missense_Mutation p.R23H 0.04 deleterious(0) probably_damaging(1) TCGA-29-2431-01 11 55406706 55406706 G T OR4P4 Missense_Mutation p.E291D 0.30 tolerated(0.08) benign(0.071) TCGA-29-2431-01 12 112093386 112093386 T C BRAP Missense_Mutation p.K432R 0.02 deleterious(0.05) benign(0.194) TCGA-29-2431-01 12 119978522 119978522 C G CCDC60 3'UTR 0.05 TCGA-29-2431-01 12 133354366 133354366 C T GOLGA3 Missense_Mutation p.G1203E 0.41 deleterious(0.01) probably_damaging(0.947) TCGA-29-2431-01 14 94568222 94568222 G A IFI27L1 Missense_Mutation p.A42T 0.29 tolerated(0.28) possibly_damaging(0.798) TCGA-29-2431-01 15 35085654 35085654 G A ACTC1 Silent p.D82D 0.27 TCGA-29-2431-01 15 74335580 74335580 G A PML Intron 0.15 TCGA-29-2431-01 15 76175727 76175727 T C UBE2Q2 Silent p.P282P 0.26 TCGA-29-2431-01 15 85488010 85488010 G A SLC28A1 Missense_Mutation p.A596T 0.36 tolerated(0.37) benign(0.017) TCGA-29-2431-01 15 90023525 90023525 A G RHCG Missense_Mutation p.S213P 0.26 deleterious(0.03) benign(0.119) TCGA-29-2431-01 16 29917248 29917248 T A ASPHD1 3'UTR 0.06 TCGA-29-2431-01 16 57685510 57685510 G T GPR56 Missense_Mutation p.A155S 0.40 tolerated(0.55) benign(0.034) TCGA-29-2431-01 17 7579420 7579420 G - TP53 Frame_Shift_Del p.S90Pfs*33 0.69 TCGA-29-2431-01 18 60017107 60017107 G A TNFRSF11A Missense_Mutation p.D74N 0.33 tolerated(0.77) possibly_damaging(0.746) TCGA-29-2431-01 19 39734498 39734516 TGGTGGAGGCGGCCCCGGG - IFNL3 Frame_Shift_Del p.T147Ifs*34 0.17 TCGA-29-2431-01 19 46021045 46021045 G A VASP Missense_Mutation p.A44T 0.22 tolerated(0.5) unknown(0) TCGA-29-2431-01 19 59021228 59021228 C T SLC27A5 Missense_Mutation p.G348D 0.39 deleterious(0) probably_damaging(0.965) TCGA-29-2431-01 1 142803866 142803866 C - RP11-423O2.5 RNA 0.36 TCGA-29-2431-01 1 159021646 159021646 G A IFI16 Missense_Mutation p.V559I 0.16 tolerated(0.19) possibly_damaging(0.861) TCGA-29-2431-01 1 175956112 175956112 A G RFWD2 Silent p.V700V 0.14 TCGA-29-2431-01 1 206241636 206241636 C G C1orf186 Missense_Mutation p.Q51H 0.33 deleterious(0.01) possibly_damaging(0.855) TCGA-29-2431-01 1 220206916 220206916 G C EPRS Missense_Mutation p.L106V 0.07 deleterious(0.01) possibly_damaging(0.77) TCGA-29-2431-01 1 41486001 41486001 C T SLFNL1 Missense_Mutation p.R111H 0.23 tolerated(0.11) benign(0.146) TCGA-29-2431-01 1 74957819 74957819 C T TNNI3K Silent p.L841L 0.30 TCGA-29-2431-01 20 48098725 48098725 A G KCNB1 Missense_Mutation p.F98S 0.06 deleterious(0) probably_damaging(0.999) TCGA-29-2431-01 22 24658524 24658524 C G POM121L9P RNA 0.27 TCGA-29-2431-01 22 24658559 24658559 C G POM121L9P RNA 0.21 TCGA-29-2431-01 2 11696695 11696695 C T GREB1 5'UTR 0.06 TCGA-29-2431-01 2 182409449 182409449 C G CERKL Missense_Mutation p.R474T 0.25 deleterious(0) probably_damaging(0.978) TCGA-29-2431-01 2 214794702 214794702 T C SPAG16 Silent p.T411T 0.34 TCGA-29-2431-01 2 231371031 231371031 G C SP100 Missense_Mutation p.K628N 0.25 deleterious(0) probably_damaging(0.978) TCGA-29-2431-01 2 70188517 70188517 C T ASPRV1 Missense_Mutation p.V102I 0.72 tolerated(0.56) benign(0.006) TCGA-29-2431-01 3 107938387 107938387 T G IFT57 Missense_Mutation p.E82A 0.17 deleterious(0) probably_damaging(0.99) TCGA-29-2431-01 3 129238543 129238543 G A IFT122 Missense_Mutation p.A1253T 0.23 deleterious(0.04) benign(0.157) TCGA-29-2431-01 3 151165563 151165563 G A IGSF10 Missense_Mutation p.R736C 0.13 deleterious(0.03) possibly_damaging(0.796) TCGA-29-2431-01 3 48621330 48621330 C A COL7A1 Intron 0.45 TCGA-29-2431-01 3 62254765 62254765 T - PTPRG Frame_Shift_Del p.I977Mfs*4 0.30 TCGA-29-2431-01 4 114203879 114203879 A T ANK2 Missense_Mutation p.I644L 0.65 possibly_damaging(0.714) TCGA-29-2431-01 4 98902460 98902460 G C STPG2 Missense_Mutation p.P208A 0.08 deleterious(0.03) possibly_damaging(0.798) TCGA-29-2431-01 5 132222026 132222026 T G AFF4 Silent p.S1025S 0.29 TCGA-29-2431-01 6 26094528 26094528 T C HFE 3'UTR 0.46 TCGA-29-2431-01 6 29012152 29012152 G A OR2W1 Silent p.S267S 0.02 TCGA-29-2431-01 6 29342686 29342686 G A OR12D3 Missense_Mutation p.P127S 0.32 deleterious(0) probably_damaging(0.997) TCGA-29-2431-01 7 100082979 100082979 C A NYAP1 Missense_Mutation p.H15Q 0.41 tolerated(0.18) possibly_damaging(0.844) TCGA-29-2431-01 8 121823572 121823572 G A SNTB1 Missense_Mutation p.A171V 0.23 deleterious(0.04) probably_damaging(0.999) TCGA-29-2431-01 8 126059566 126059566 T C KIAA0196 Missense_Mutation p.D796G 0.18 tolerated(0.09) benign(0.392) TCGA-29-2431-01 9 120475369 120475369 A T TLR4 Missense_Mutation p.E321D 0.13 tolerated(0.58) benign(0) TCGA-29-2431-01 9 131285076 131285076 C T GLE1 Missense_Mutation p.R188W 0.26 deleterious(0) probably_damaging(0.955) TCGA-29-2431-01 9 131395168 131395168 T G SPTAN1 Missense_Mutation p.I2414M 0.05 deleterious(0) benign(0.04) TCGA-29-2432-01 10 121567542 121567542 C G INPP5F Missense_Mutation p.S513R 0.22 deleterious(0) probably_damaging(0.915) TCGA-29-2432-01 10 123970013 123970013 G A TACC2 Missense_Mutation p.D2025N 0.09 probably_damaging(0.995) TCGA-29-2432-01 10 128147616 128147616 A C C10orf90 Silent p.P630P 0.19 TCGA-29-2432-01 10 35897090 35897090 G T GJD4 Missense_Mutation p.V217F 0.47 deleterious(0.01) possibly_damaging(0.801) TCGA-29-2432-01 10 45480393 45480393 T C RASSF4 Missense_Mutation p.I169T 0.21 deleterious(0) probably_damaging(0.997) TCGA-29-2432-01 10 50724735 50724735 G T ERCC6-PGBD3 Silent p.P610P 0.38 TCGA-29-2432-01 10 75863660 75863660 G C VCL Missense_Mutation p.W702S 0.06 deleterious(0) probably_damaging(0.999) TCGA-29-2432-01 10 93788808 93788808 T A BTAF1 3'UTR 0.17 TCGA-29-2432-01 10 98303742 98303742 A C TM9SF3 Intron 0.40 TCGA-29-2432-01 11 66332382 66332382 C T CTSF Missense_Mutation p.V381M 0.72 deleterious(0.03) possibly_damaging(0.595) TCGA-29-2432-01 11 73796734 73796734 G C C2CD3 Missense_Mutation p.A1280G 0.23 deleterious(0.01) possibly_damaging(0.874) TCGA-29-2432-01 11 93913319 93913319 T - PANX1 Frame_Shift_Del p.L366Pfs*2 0.20 TCGA-29-2432-01 12 121622368 121622368 C G P2RX7 Silent p.V517V 0.65 TCGA-29-2432-01 12 32755149 32755149 G C FGD4 Missense_Mutation p.K297N 0.18 deleterious(0) probably_damaging(0.996) TCGA-29-2432-01 12 47629392 47629392 G T PCED1B Silent p.R182R 0.29 TCGA-29-2432-01 12 48238764 48238764 G A VDR Missense_Mutation p.A400V 0.28 tolerated(0.24) benign(0.035) TCGA-29-2432-01 12 7556156 7556157 TC - CD163L1 Frame_Shift_Del p.R461Ifs*9 0.15 TCGA-29-2432-01 14 105929881 105929881 C G MTA1 Missense_Mutation p.P357A 0.24 deleterious(0) probably_damaging(0.997) TCGA-29-2432-01 14 24030606 24030606 T C AP1G2 Missense_Mutation p.D631G 0.18 tolerated(1) benign(0.002) TCGA-29-2432-01 14 33242889 33242889 C G AKAP6 Silent p.L1126L 0.24 TCGA-29-2432-01 14 65235790 65235790 T C SPTB Missense_Mutation p.N1995S 0.20 tolerated(0.86) benign(0) TCGA-29-2432-01 14 71275547 71275547 G A MAP3K9 Silent p.R114R 0.24 TCGA-29-2432-01 14 76905769 76905769 T A ESRRB Missense_Mutation p.S25T 0.20 deleterious(0.04) possibly_damaging(0.828) TCGA-29-2432-01 15 42107468 42107468 G A MAPKBP1 Silent p.E400E 0.21 TCGA-29-2432-01 16 1394521 1394521 G C BAIAP3 Missense_Mutation p.E587Q 0.34 tolerated(0.12) possibly_damaging(0.613) TCGA-29-2432-01 16 16291943 16291943 G C ABCC6 Missense_Mutation p.L425V 0.11 tolerated(1) benign(0.008) TCGA-29-2432-01 16 20329554 20329581 GGGGGTGGCATAGCAGTTCCTCAACACC - GP2 Frame_Shift_Del p.V397Lfs*8 0.15 TCGA-29-2432-01 16 20548537 20548540 AGAG - ACSM2B 3'UTR 0.46 TCGA-29-2432-01 16 24202459 24202459 G A PRKCB Missense_Mutation p.E591K 0.52 deleterious(0.03) benign(0.296) TCGA-29-2432-01 16 27445751 27445751 A C IL21R Missense_Mutation p.S45R 0.36 tolerated(0.55) benign(0.015) TCGA-29-2432-01 16 28847795 28847795 G C ATXN2L Silent p.L1096L 0.16 TCGA-29-2432-01 16 75467258 75467258 C T CFDP1 5'UTR 0.24 TCGA-29-2432-01 16 81077192 81077192 G T ATMIN Missense_Mutation p.K363N 0.13 deleterious(0) possibly_damaging(0.873) TCGA-29-2432-01 17 72462821 72462821 C A CD300A 5'UTR 0.16 TCGA-29-2432-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.56 deleterious(0) probably_damaging(0.997) TCGA-29-2432-01 17 78237543 78237543 C T RNF213 Silent p.C21C 0.44 TCGA-29-2432-01 19 16513090 16513090 G A EPS15L1 Intron 0.30 TCGA-29-2432-01 19 19243235 19243235 G C TMEM161A Nonsense_Mutation p.Y123* 0.59 TCGA-29-2432-01 19 38200708 38200708 C G ZNF607 Missense_Mutation p.G9R 0.67 tolerated(0.77) benign(0) TCGA-29-2432-01 19 41007827 41007827 G C SPTBN4 Splice_Site p.X262_splice 0.21 TCGA-29-2432-01 19 42882880 42882880 G A MEGF8 3'UTR 0.17 TCGA-29-2432-01 19 43679488 43679488 T C PSG5 Silent p.Q281Q 0.03 TCGA-29-2432-01 19 46174540 46174540 C A GIPR Intron 0.20 TCGA-29-2432-01 19 48977443 48977443 G A CYTH2 Silent p.T184T 0.20 TCGA-29-2432-01 19 53207775 53207775 A T ZNF611 3'UTR 0.36 TCGA-29-2432-01 1 151789281 151789281 C T RORC Missense_Mutation p.G53S 0.26 deleterious(0) probably_damaging(1) TCGA-29-2432-01 1 151994930 151994930 G A NBPF18P RNA 0.47 TCGA-29-2432-01 1 152733748 152733748 G T KPRP Missense_Mutation p.D562Y 0.29 deleterious_low_confidence(0) possibly_damaging(0.483) TCGA-29-2432-01 1 159505234 159505234 G A OR10J5 Silent p.C188C 0.37 TCGA-29-2432-01 1 19473417 19473417 C T UBR4 Silent p.V2569V 0.17 TCGA-29-2432-01 1 201332551 201332551 A T TNNT2 Intron 0.42 TCGA-29-2432-01 1 242015649 242015649 C A EXO1 Missense_Mutation p.P73T 0.15 deleterious(0) probably_damaging(1) TCGA-29-2432-01 1 244756716 244756716 C G C1orf101 Missense_Mutation p.P737A 0.37 tolerated(0.09) benign(0.319) TCGA-29-2432-01 1 248343796 248343796 G A OR2M2 Missense_Mutation p.G170E 0.22 deleterious(0.02) possibly_damaging(0.833) TCGA-29-2432-01 1 43869271 43869271 G C SZT2 Splice_Site p.X52_splice 0.21 TCGA-29-2432-01 1 7887575 7887575 C - PER3 Frame_Shift_Del p.P856Lfs*32 0.12 TCGA-29-2432-01 1 9078434 9078434 C T SLC2A7 Missense_Mutation p.G146D 0.16 deleterious(0) probably_damaging(1) TCGA-29-2432-01 1 94564537 94564537 C A ABCA4 Missense_Mutation p.G194V 0.25 tolerated(0.07) probably_damaging(0.999) TCGA-29-2432-01 20 20056208 20056208 A G C20orf26 Missense_Mutation p.H172R 0.23 tolerated(0.27) benign(0.076) TCGA-29-2432-01 20 5294584 5294584 A T PROKR2 Missense_Mutation p.N144K 0.22 deleterious(0) probably_damaging(0.996) TCGA-29-2432-01 20 58448961 58448961 A T SYCP2 Missense_Mutation p.F1169I 0.31 tolerated(0.16) benign(0) TCGA-29-2432-01 20 61444447 61444447 G A OGFR Missense_Mutation p.G494R 0.18 tolerated(0.23) benign(0.007) TCGA-29-2432-01 21 31965075 31965075 C G KRTAP6-3 Missense_Mutation p.S97C 0.41 unknown(0) TCGA-29-2432-01 22 24204383 24204383 G A AP000350.10 Silent p.P3P 0.15 TCGA-29-2432-01 22 24384263 24384263 G A GSTT1 5'UTR 0.72 TCGA-29-2432-01 22 36922085 36922085 C T EIF3D Missense_Mutation p.M28I 0.10 tolerated(0.65) benign(0.04) TCGA-29-2432-01 2 113671393 113671393 C A IL37 Missense_Mutation p.P36Q 0.05 tolerated(0.08) benign(0.06) TCGA-29-2432-01 2 116593799 116593799 G A DPP10 Missense_Mutation p.V677M 0.26 deleterious(0) benign(0.065) TCGA-29-2432-01 2 119604357 119604357 A G EN1 Silent p.A129A 0.37 TCGA-29-2432-01 2 170493379 170493379 A G PPIG Silent p.E537E 0.15 TCGA-29-2432-01 2 222428769 222428769 C T EPHA4 Missense_Mutation p.E169K 0.10 tolerated(0.21) probably_damaging(0.974) TCGA-29-2432-01 2 234580612 234580612 C T UGT1A9 Missense_Mutation p.P11L 0.09 tolerated(0.41) benign(0.002) TCGA-29-2432-01 2 242438556 242438556 C T STK25 Missense_Mutation p.E207K 0.18 deleterious(0) probably_damaging(1) TCGA-29-2432-01 2 27587588 27587588 G C EIF2B4 Missense_Mutation p.L477V 0.22 deleterious(0) probably_damaging(0.967) TCGA-29-2432-01 2 33413786 33413786 C T LTBP1 Silent p.Y523Y 0.21 TCGA-29-2432-01 2 40656129 40656129 C A SLC8A1 Missense_Mutation p.R431L 0.21 tolerated(0.11) probably_damaging(0.998) TCGA-29-2432-01 2 63223825 63223825 A T EHBP1 Silent p.A1080A 0.20 TCGA-29-2432-01 3 113789576 113789576 A G QTRTD1 Missense_Mutation p.D158G 0.14 deleterious(0.01) probably_damaging(1) TCGA-29-2432-01 3 180685969 180685969 A T FXR1 Silent p.G443G 0.41 TCGA-29-2432-01 3 44763470 44763470 G A ZNF502 Silent p.A387A 0.10 TCGA-29-2432-01 3 48726977 48726977 G A IP6K2 Silent p.G258G 0.27 TCGA-29-2432-01 3 49050042 49050042 T A WDR6 Missense_Mutation p.S389T 0.23 tolerated(0.27) benign(0.054) TCGA-29-2432-01 3 52555462 52555462 T C STAB1 Silent p.R1998R 0.19 TCGA-29-2432-01 3 53126420 53126420 A C RFT1 Missense_Mutation p.F475V 0.43 tolerated(0.28) benign(0.403) TCGA-29-2432-01 4 90169018 90169018 C T GPRIN3 Silent p.R748R 0.20 TCGA-29-2432-01 5 118569151 118569151 C T DMXL1 Nonsense_Mutation p.Q2798* 0.13 TCGA-29-2432-01 5 139189299 139189307 GATTCAGCG - PSD2 In_Frame_Del p.D92_A94del 0.14 TCGA-29-2432-01 5 140558832 140558832 C G PCDHB8 Missense_Mutation p.T406R 0.12 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-29-2432-01 5 151784620 151784620 C G NMUR2 Missense_Mutation p.E19Q 0.46 tolerated(0.12) benign(0.046) TCGA-29-2432-01 5 176665275 176665275 G A NSD1 Missense_Mutation p.R1320Q 0.38 tolerated_low_confidence(0.13) benign(0.01) TCGA-29-2432-01 5 179334815 179334815 G A TBC1D9B Silent p.L3L 0.29 TCGA-29-2432-01 5 54529143 54529143 C A CCNO Missense_Mutation p.G70V 0.11 tolerated(0.13) benign(0.005) TCGA-29-2432-01 6 136934308 136934308 C A MAP3K5 Nonsense_Mutation p.E789* 0.38 TCGA-29-2432-01 6 26406179 26406179 T C BTN3A1 Missense_Mutation p.M43T 0.15 deleterious(0.04) possibly_damaging(0.689) TCGA-29-2432-01 6 30877746 30877746 C T GTF2H4 Missense_Mutation p.R94W 0.09 deleterious(0.02) probably_damaging(0.932) TCGA-29-2432-01 6 38775494 38775494 C G DNAH8 Splice_Site p.X869_splice 0.39 TCGA-29-2432-01 6 39278751 39278752 GC A KCNK17 Frame_Shift_Del p.S90Ifs*33 0.22 TCGA-29-2432-01 6 43608290 43608290 A - MAD2L1BP 3'UTR 0.33 TCGA-29-2432-01 6 51882300 51882300 G A PKHD1 Silent p.Y1836Y 0.08 TCGA-29-2432-01 7 135287641 135287641 A G NUP205 Silent p.L867L 0.15 TCGA-29-2432-01 7 15470653 15470653 C G AGMO Missense_Mutation p.V164L 0.49 tolerated(0.24) benign(0.012) TCGA-29-2432-01 7 34888188 34888188 T C NPSR1 Missense_Mutation p.V313A 0.18 tolerated(0.07) possibly_damaging(0.845) TCGA-29-2432-01 7 92135565 92135565 G A PEX1 Nonsense_Mutation p.R633* 0.15 TCGA-29-2432-01 7 92905560 92905560 A G CCDC132 Silent p.L295L 0.18 TCGA-29-2432-01 8 100548922 100548922 G C VPS13B Intron 0.13 TCGA-29-2432-01 8 145621956 145621956 C A CPSF1 Missense_Mutation p.V895F 0.08 deleterious(0.05) possibly_damaging(0.563) TCGA-29-2432-01 8 146106924 146106924 G C ZNF250 Missense_Mutation p.H553Q 0.09 deleterious(0) probably_damaging(0.996) TCGA-29-2432-01 8 66639197 66639197 G A PDE7A Missense_Mutation p.T278I 0.17 tolerated(0.2) benign(0.002) TCGA-29-2432-01 9 104324751 104324751 A T RNF20 3'UTR 0.22 TCGA-29-2432-01 9 111899877 111899877 G A FRRS1L Missense_Mutation p.P298L 0.19 tolerated(0.09) probably_damaging(0.925) TCGA-29-2432-01 9 118973935 118973935 C G PAPPA Missense_Mutation p.P548A 0.26 deleterious(0) possibly_damaging(0.822) TCGA-29-2432-01 9 124079409 124079409 G A GSN Missense_Mutation p.E318K 0.10 tolerated(0.34) benign(0.069) TCGA-29-2432-01 9 12694160 12694160 G A TYRP1 Missense_Mutation p.R55H 0.24 tolerated(0.12) benign(0.232) TCGA-29-2432-01 9 130423445 130423445 G T STXBP1 Silent p.L130L 0.16 TCGA-29-2432-01 9 137987847 137987847 C T OLFM1 Silent p.H128H 0.66 TCGA-29-2432-01 9 214631 214631 G C C9orf66 Missense_Mutation p.R256G 0.23 tolerated_low_confidence(0.08) benign(0.433) TCGA-29-2432-01 9 286478 286478 T A DOCK8 Silent p.P58P 0.23 TCGA-29-2432-01 9 35091645 35091645 C A PIGO Missense_Mutation p.V747L 0.22 deleterious(0.02) possibly_damaging(0.677) TCGA-29-2432-01 9 35103081 35103081 C A STOML2 Missense_Mutation p.R4L 0.16 deleterious(0.01) unknown(0) TCGA-29-2432-01 9 73461470 73461470 A G TRPM3 Missense_Mutation p.L167P 0.14 deleterious(0) probably_damaging(0.943) TCGA-29-2432-01 X 107403874 107403874 C T COL4A6 Silent p.G1449G 0.18 TCGA-29-2432-01 X 117707865 117707865 C T DOCK11 Missense_Mutation p.R425C 0.08 deleterious(0) possibly_damaging(0.507) TCGA-29-2432-01 X 118723233 118723233 T C NKRF 3'UTR 0.33 TCGA-29-2432-01 X 13727391 13727391 G A RAB9A Missense_Mutation p.E176K 0.14 deleterious(0.03) benign(0.15) TCGA-29-2432-01 X 83351223 83351223 G A RPS6KA6 Silent p.D650D 0.17 TCGA-29-2434-01 10 105330710 105330710 G T NEURL1 Missense_Mutation p.G56V 0.44 tolerated(0.13) benign(0.059) TCGA-29-2434-01 10 28966845 28966845 T A BAMBI Missense_Mutation p.Y7N 0.21 deleterious_low_confidence(0.05) benign(0.076) TCGA-29-2434-01 10 5009455 5009455 A T AKR1C1 Intron 0.50 TCGA-29-2434-01 10 75533133 75533145 CCTGGGCGCTGTG - FUT11 Frame_Shift_Del p.L299Pfs*9 0.95 TCGA-29-2434-01 10 90356624 90356624 G C LIPJ Missense_Mutation p.Q218H 0.36 tolerated(0.13) benign(0.001) TCGA-29-2434-01 11 102714195 102714195 T C MMP3 Missense_Mutation p.D28G 0.41 tolerated(0.15) benign(0.02) TCGA-29-2434-01 11 17531982 17531982 C T USH1C Silent p.Q500Q 0.25 TCGA-29-2434-01 11 59211212 59211212 T C OR5A1 Missense_Mutation p.S191P 0.40 deleterious(0.01) benign(0.247) TCGA-29-2434-01 11 59282611 59282611 A G OR4D9 Missense_Mutation p.I76V 0.43 tolerated(1) benign(0.004) TCGA-29-2434-01 11 64599897 64599897 C T CDC42BPG Intron 0.41 TCGA-29-2434-01 11 68816420 68816420 C A TPCN2 5'UTR 0.48 TCGA-29-2434-01 11 8947274 8947274 G C C11orf16 Missense_Mutation p.Q314E 0.05 tolerated(0.12) possibly_damaging(0.747) TCGA-29-2434-01 11 94192749 94192749 T C MRE11A Splice_Site p.X443_splice 0.38 TCGA-29-2434-01 12 132632456 132632456 C T NOC4L Missense_Mutation p.T212M 0.28 tolerated(0.09) benign(0.046) TCGA-29-2434-01 12 19436473 19436473 C A PLEKHA5 Missense_Mutation p.P525T 0.29 tolerated(0.22) benign(0.009) TCGA-29-2434-01 12 68619501 68619501 C A IL26 Silent p.L12L 0.44 TCGA-29-2434-01 12 7984221 7984221 A G SLC2A14 Missense_Mutation p.L107P 0.14 deleterious(0.02) benign(0.152) TCGA-29-2434-01 13 113536171 113536171 C G ATP11A 3'UTR 0.42 TCGA-29-2434-01 13 27643232 27643232 C T USP12 3'UTR 0.30 TCGA-29-2434-01 13 50235197 50235197 C T EBPL Nonsense_Mutation p.W176* 0.30 TCGA-29-2434-01 13 64321072 64321072 G A AL445989.1 Missense_Mutation p.G47S 0.33 unknown(0) TCGA-29-2434-01 14 100402380 100402380 G A EML1 Missense_Mutation p.A661T 0.66 deleterious(0.01) possibly_damaging(0.664) TCGA-29-2434-01 14 105477757 105477757 C G CDCA4 Missense_Mutation p.E170D 0.20 tolerated(0.13) benign(0.049) TCGA-29-2434-01 14 39561751 39561751 T C SEC23A Silent p.V120V 0.18 TCGA-29-2434-01 14 54416767 54416767 C G BMP4 Missense_Mutation p.G404R 0.27 deleterious(0) probably_damaging(0.993) TCGA-29-2434-01 14 76108239 76108239 A T FLVCR2 Missense_Mutation p.N503Y 0.90 deleterious(0.03) benign(0.189) TCGA-29-2434-01 14 79270070 79270070 G A NRXN3 Missense_Mutation p.A345T 0.88 deleterious(0.01) probably_damaging(0.991) TCGA-29-2434-01 15 24922533 24922533 T A NPAP1 Missense_Mutation p.F507I 0.22 deleterious(0.02) benign(0.199) TCGA-29-2434-01 15 68582024 68582024 C A FEM1B Missense_Mutation p.H110N 0.04 tolerated(0.64) benign(0.007) TCGA-29-2434-01 16 2158972 2158972 G C PKD1 Missense_Mutation p.L2066V 0.95 probably_damaging(1) TCGA-29-2434-01 16 4016940 4016940 C T ADCY9 Silent p.S966S 0.92 TCGA-29-2434-01 16 417577 417577 C A MRPL28 3'UTR 0.48 TCGA-29-2434-01 16 4940815 4940815 C G PPL Missense_Mutation p.E692D 0.26 deleterious(0) benign(0.289) TCGA-29-2434-01 16 50349009 50349009 C T ADCY7 Missense_Mutation p.A1019V 0.13 deleterious(0) probably_damaging(0.999) TCGA-29-2434-01 16 50759443 50759443 G A NOD2 Missense_Mutation p.A976T 0.11 tolerated(0.06) benign(0.274) TCGA-29-2434-01 16 53859939 53859939 G T FTO Missense_Mutation p.R96L 0.44 deleterious(0) probably_damaging(1) TCGA-29-2434-01 16 70530318 70530318 T C COG4 Missense_Mutation p.K500E 0.39 deleterious(0.04) possibly_damaging(0.805) TCGA-29-2434-01 16 9210587 9210587 G T C16orf72 Missense_Mutation p.V216L 0.30 tolerated(0.48) benign(0.004) TCGA-29-2434-01 17 33586531 33586531 A G SLFN5 Missense_Mutation p.I274M 0.46 tolerated(0.12) possibly_damaging(0.89) TCGA-29-2434-01 17 36453032 36453032 C T MRPL45 5'UTR 0.22 TCGA-29-2434-01 17 42287494 42287494 C T UBTF Missense_Mutation p.E542K 0.42 deleterious(0.01) probably_damaging(0.927) TCGA-29-2434-01 17 43545851 43545865 GAGGCCATGGAGGGA - PLEKHM1 In_Frame_Del p.S340_L344del 0.33 TCGA-29-2434-01 17 7481744 7481744 T C EIF4A1 Silent p.I387I 0.26 TCGA-29-2434-01 17 7577095 7577095 G C TP53 Missense_Mutation p.D281E 0.88 deleterious(0.01) probably_damaging(0.971) TCGA-29-2434-01 17 8794203 8794203 T C PIK3R5 Missense_Mutation p.E170G 0.93 deleterious(0.02) probably_damaging(0.995) TCGA-29-2434-01 18 29709119 29709119 C T RNF138 Missense_Mutation p.A236V 0.44 deleterious(0) probably_damaging(0.998) TCGA-29-2434-01 19 12841739 12841739 G C C19orf43 3'UTR 0.09 TCGA-29-2434-01 19 33370101 33370130 GGAGCAGACATCGCAGCCGTCCAGCAGGTC - CEP89 In_Frame_Del p.D764_S773del 0.26 TCGA-29-2434-01 19 40828136 40828152 GGGGACTGGCCTTGGCT A C19orf47 Frame_Shift_Del p.A303Sfs*4 0.31 TCGA-29-2434-01 19 4153721 4153721 C T CREB3L3 5'UTR 0.42 TCGA-29-2434-01 19 42858805 42858805 C G MEGF8 Missense_Mutation p.D1292E 0.27 deleterious(0.01) possibly_damaging(0.79) TCGA-29-2434-01 19 45317433 45317433 G A BCAM Nonsense_Mutation p.W270* 0.30 TCGA-29-2434-01 19 48878980 48878980 G T SYNGR4 Missense_Mutation p.A148S 0.34 tolerated(0.21) benign(0.096) TCGA-29-2434-01 19 52250020 52250020 G A FPR1 Silent p.S76S 0.47 TCGA-29-2434-01 19 54617895 54617895 C T TFPT Missense_Mutation p.R70Q 0.47 tolerated(0.62) benign(0.002) TCGA-29-2434-01 19 54655965 54655965 C T CNOT3 Silent p.A536A 0.41 TCGA-29-2434-01 19 6857271 6857271 G A VAV1 3'Flank 0.86 TCGA-29-2434-01 1 11074009 11074009 C G TARDBP Silent p.V75V 0.28 TCGA-29-2434-01 1 112019976 112019976 C T C1orf162 Missense_Mutation p.A43V 0.44 tolerated(0.05) probably_damaging(0.986) TCGA-29-2434-01 1 155148389 155148389 G T TRIM46 Missense_Mutation p.K117N 0.24 deleterious(0) benign(0.276) TCGA-29-2434-01 1 155319141 155319141 G A ASH1L Missense_Mutation p.L2511F 0.21 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-29-2434-01 1 155319142 155319142 C T ASH1L Missense_Mutation p.M2510I 0.21 deleterious_low_confidence(0.04) probably_damaging(0.976) TCGA-29-2434-01 1 158368525 158368525 A C OR10T2 Missense_Mutation p.H244Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-29-2434-01 1 158517009 158517009 C G OR6Y1 Missense_Mutation p.C296S 0.04 tolerated(0.21) probably_damaging(0.964) TCGA-29-2434-01 1 15957017 15957017 A T DDI2 Missense_Mutation p.N156Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-29-2434-01 1 160136403 160136403 C T ATP1A4 Missense_Mutation p.T378M 0.27 deleterious(0) probably_damaging(1) TCGA-29-2434-01 1 178490503 178490503 G T TEX35 Intron 0.19 TCGA-29-2434-01 1 207646195 207646195 C A CR2 Missense_Mutation p.T550N 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-29-2434-01 1 244716019 244716019 G A C1orf101 Missense_Mutation p.R311H 0.24 tolerated(0.73) benign(0.002) TCGA-29-2434-01 1 44402229 44402244 GCTCCTGCCGCCGCGC - ARTN Frame_Shift_Del p.S161Afs*103 0.44 TCGA-29-2434-01 1 53544495 53544495 C T PODN Missense_Mutation p.S486L 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-29-2434-01 1 89654347 89654347 A G GBP4 Missense_Mutation p.V443A 0.45 tolerated(0.19) benign(0.17) TCGA-29-2434-01 20 20177351 20177351 G A C20orf26 Silent p.K576K 0.40 TCGA-29-2434-01 20 34090440 34090440 C G CEP250 Missense_Mutation p.Q1415E 0.36 benign(0.018) TCGA-29-2434-01 20 47244462 47244462 C G PREX1 Missense_Mutation p.L1602F 0.06 deleterious(0) probably_damaging(0.999) TCGA-29-2434-01 20 57415359 57415359 C T RP4-806M20.3 5'Flank 0.72 TCGA-29-2434-01 20 58452580 58452580 C A SYCP2 Missense_Mutation p.D1004Y 0.12 deleterious(0.04) benign(0.072) TCGA-29-2434-01 20 60913525 60913525 C G LAMA5 Missense_Mutation p.Q539H 0.16 benign(0.444) TCGA-29-2434-01 21 30521518 30521518 C T MAP3K7CL Missense_Mutation p.P127S 0.31 tolerated_low_confidence(0.18) benign(0.028) TCGA-29-2434-01 21 40584593 40584593 C A BRWD1 Missense_Mutation p.R1300I 0.42 deleterious(0.01) benign(0) TCGA-29-2434-01 21 46707753 46707753 C G POFUT2 Missense_Mutation p.G12R 0.53 tolerated(0.35) benign(0.02) TCGA-29-2434-01 22 21330564 21330564 T C AIFM3 Missense_Mutation p.Y290H 0.33 deleterious(0) probably_damaging(0.994) TCGA-29-2434-01 22 24582233 24582233 A C SUSD2 Missense_Mutation p.T498P 0.30 tolerated(0.11) benign(0.433) TCGA-29-2434-01 22 39067332 39067332 A G CBY1 Intron 0.32 TCGA-29-2434-01 2 112566576 112566576 T C ANAPC1 Silent p.V1260V 0.41 TCGA-29-2434-01 2 120005445 120005445 C G STEAP3 Missense_Mutation p.A238G 0.15 tolerated(0.33) benign(0.108) TCGA-29-2434-01 2 135738852 135738852 G T MAP3K19 Missense_Mutation p.N1153K 0.44 deleterious(0) benign(0.098) TCGA-29-2434-01 2 166848638 166848638 C T SCN1A Missense_Mutation p.C1716Y 0.35 deleterious(0) probably_damaging(0.998) TCGA-29-2434-01 2 187626817 187626817 C T FAM171B Missense_Mutation p.T583M 0.25 tolerated(0.1) benign(0.218) TCGA-29-2434-01 2 192815031 192815031 C T TMEFF2 3'UTR 0.44 TCGA-29-2434-01 2 198363399 198363399 C G HSPD1 Missense_Mutation p.K58N 0.26 deleterious(0) probably_damaging(1) TCGA-29-2434-01 2 200820527 200820527 G A C2orf47 Silent p.A2A 0.28 TCGA-29-2434-01 2 220396852 220396852 T A ASIC4 Splice_Site p.X412_splice 0.22 TCGA-29-2434-01 2 232672376 232672376 A T COPS7B 3'UTR 0.29 TCGA-29-2434-01 2 234545171 234545187 GGCTCGCGCAGGGTGGA - UGT1A10 Frame_Shift_Del p.M1_?7 0.14 TCGA-29-2434-01 3 10401654 10401654 C A ATP2B2 Missense_Mutation p.V605L 0.03 deleterious(0.04) benign(0.262) TCGA-29-2434-01 3 120389270 120389283 TTACCTGGTTAGGA - HGD Splice_Site p.X91_splice 0.16 TCGA-29-2434-01 3 136573892 136573892 T C SLC35G2 Missense_Mutation p.M197T 0.19 tolerated(0.37) benign(0.097) TCGA-29-2434-01 3 13896259 13896259 C A WNT7A Missense_Mutation p.G114C 0.18 deleterious(0) probably_damaging(0.999) TCGA-29-2434-01 3 148875272 148875272 G A HPS3 Missense_Mutation p.E549K 0.17 tolerated(0.12) probably_damaging(0.953) TCGA-29-2434-01 3 155571037 155571037 T A SLC33A1 Missense_Mutation p.Q250H 0.05 deleterious(0.01) benign(0.058) TCGA-29-2434-01 3 15686960 15686960 G A BTD Missense_Mutation p.A533T 0.03 deleterious(0.03) possibly_damaging(0.831) TCGA-29-2434-01 3 160233298 160233298 C G KPNA4 Missense_Mutation p.C325S 0.14 tolerated(0.15) benign(0.06) TCGA-29-2434-01 3 169644857 169644857 C G SAMD7 Silent p.T269T 0.11 TCGA-29-2434-01 3 184045201 184045201 G C EIF4G1 Missense_Mutation p.S1216T 0.30 tolerated(0.09) benign(0.119) TCGA-29-2434-01 3 193042677 193042677 G C ATP13A5 Silent p.L550L 0.67 TCGA-29-2434-01 3 195711467 195711467 C T SDHAP1 RNA 0.06 TCGA-29-2434-01 3 42788802 42788802 C A CCDC13 Missense_Mutation p.D223Y 0.19 deleterious(0) probably_damaging(0.981) TCGA-29-2434-01 3 49160307 49160307 G A LAMB2 Missense_Mutation p.A1468V 0.33 tolerated(0.26) benign(0) TCGA-29-2434-01 3 52257120 52257120 G T TLR9 Missense_Mutation p.N558K 0.63 tolerated(0.43) benign(0.142) TCGA-29-2434-01 3 52712517 52712517 T G PBRM1 Silent p.R79R 0.03 TCGA-29-2434-01 4 119978619 119978619 T A SYNPO2 Missense_Mutation p.W1106R 0.38 tolerated(0.35) possibly_damaging(0.555) TCGA-29-2434-01 4 47593177 47593177 G A ATP10D Missense_Mutation p.G1354R 0.36 tolerated(0.61) benign(0.002) TCGA-29-2434-01 4 55968612 55968612 A T KDR Missense_Mutation p.I684N 0.56 deleterious(0) probably_damaging(0.932) TCGA-29-2434-01 4 5699354 5699354 C A EVC2 Missense_Mutation p.W83C 0.57 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-29-2434-01 4 69817045 69817045 A G UGT2A3 Missense_Mutation p.V145A 0.27 deleterious(0.04) possibly_damaging(0.9) TCGA-29-2434-01 5 137514418 137514418 T G BRD8 5'UTR 0.36 TCGA-29-2434-01 5 140531278 140531278 C G PCDHB6 Missense_Mutation p.I480M 0.03 deleterious_low_confidence(0) benign(0.132) TCGA-29-2434-01 5 26915874 26915874 C T CDH9 Silent p.K129K 0.10 TCGA-29-2434-01 5 38427278 38427278 G C EGFLAM Missense_Mutation p.D660H 0.26 deleterious(0) probably_damaging(1) TCGA-29-2434-01 5 80422919 80422919 T C RASGRF2 Missense_Mutation p.S875P 0.44 tolerated_low_confidence(0.2) benign(0.003) TCGA-29-2434-01 6 155732402 155732425 CCCCTGCTCACTCATCCGTGTTTC - NOX3 In_Frame_Del p.E460_G467del 0.17 TCGA-29-2434-01 6 25682188 25682188 T G SCGN Missense_Mutation p.F161V 0.36 deleterious(0) probably_damaging(0.977) TCGA-29-2434-01 6 25966673 25966673 T C TRIM38 5'UTR 0.21 TCGA-29-2434-01 6 38862480 38862480 A T DNAH8 Nonsense_Mutation p.K2646* 0.36 TCGA-29-2434-01 6 43307012 43307012 C T ZNF318 Missense_Mutation p.S1575N 0.20 probably_damaging(0.967) TCGA-29-2434-01 6 43323046 43323046 G T ZNF318 Missense_Mutation p.L676I 0.24 possibly_damaging(0.855) TCGA-29-2434-01 6 44364158 44364158 A - CDC5L Frame_Shift_Del p.K174Nfs*23 0.21 TCGA-29-2434-01 6 69348999 69348999 A G BAI3 Silent p.K144K 0.28 TCGA-29-2434-01 6 84061798 84061798 T C ME1 Silent p.P141P 0.44 TCGA-29-2434-01 7 100279168 100279168 T A GIGYF1 3'UTR 0.32 TCGA-29-2434-01 7 133948829 133948829 A G LRGUK 3'UTR 0.50 TCGA-29-2434-01 7 138261140 138261140 A C TRIM24 Silent p.V679V 0.10 TCGA-29-2434-01 7 150769178 150769178 G A SLC4A2 Silent p.L830L 0.20 TCGA-29-2434-01 7 151846077 151846077 G T KMT2C Missense_Mutation p.A4312D 0.23 probably_damaging(0.999) TCGA-29-2434-01 7 28527796 28527796 T G CREB5 Missense_Mutation p.Y3D 0.48 deleterious_low_confidence(0) benign(0.024) TCGA-29-2434-01 7 31124406 31124406 C G ADCYAP1R1 Missense_Mutation p.L165V 0.15 deleterious(0.01) possibly_damaging(0.823) TCGA-29-2434-01 7 32535410 32535410 G A AVL9 Missense_Mutation p.C30Y 0.22 tolerated(0.08) benign(0.043) TCGA-29-2434-01 7 42959049 42959063 CTGAGGAAATTAGTG - PSMA2 Intron 0.19 TCGA-29-2434-01 7 51111077 51111077 C G COBL Intron 0.27 TCGA-29-2434-01 7 72413915 72413915 G C POM121 Missense_Mutation p.S863T 0.17 deleterious(0.01) benign(0.154) TCGA-29-2434-01 7 86416244 86416244 T G GRM3 Missense_Mutation p.I379S 0.17 tolerated(0.17) possibly_damaging(0.8) TCGA-29-2434-01 7 87144616 87144616 G T ABCB1 Missense_Mutation p.S1071R 0.18 deleterious(0) benign(0.34) TCGA-29-2434-01 7 99950412 99950412 C T PILRB 5'UTR 0.37 TCGA-29-2434-01 8 142432202 142432202 T C PTP4A3 5'UTR 0.38 TCGA-29-2434-01 8 38002755 38002755 G C STAR Silent p.L243L 0.39 TCGA-29-2434-01 9 130165961 130165961 G A SLC2A8 Missense_Mutation p.R249Q 0.49 deleterious(0.04) benign(0.017) TCGA-29-2434-01 9 75435908 75435908 C T TMC1 Silent p.G638G 0.30 TCGA-29-2434-01 9 79981666 79981666 T C VPS13A Silent p.S2783S 0.33 TCGA-29-2434-01 X 148577989 148577996 GGGACCTC - IDS Frame_Shift_Del p.E43* 0.24 TCGA-29-2434-01 X 152958573 152958573 C A SLC6A8 Silent p.A285A 0.27 TCGA-29-2434-01 X 153689044 153689044 A T PLXNA3 Missense_Mutation p.K174M 0.63 deleterious(0) possibly_damaging(0.788) TCGA-29-2434-01 X 15800868 15800868 G C CA5B 3'UTR 0.76 TCGA-29-2434-01 X 69670154 69670154 C T DLG3 Missense_Mutation p.A280V 0.43 tolerated(0.07) benign(0.095) TCGA-29-2434-01 X 77084497 77084497 G T MAGT1 3'UTR 0.36 TCGA-29-2434-01 X 96204031 96204031 G T DIAPH2 Missense_Mutation p.R536L 0.40 tolerated(0.06) unknown(0) TCGA-29-2436-01 10 106865197 106865197 C T SORCS3 Missense_Mutation p.T379I 0.13 deleterious(0.04) benign(0.296) TCGA-29-2436-01 10 121336661 121336661 C T TIAL1 Silent p.T281T 0.05 TCGA-29-2436-01 10 26508165 26508165 G A GAD2 Silent p.L160L 0.46 TCGA-29-2436-01 10 76789545 76789545 G C KAT6B Missense_Mutation p.V1655L 0.42 probably_damaging(0.986) TCGA-29-2436-01 13 111938507 111938507 G T ARHGEF7 Missense_Mutation p.S676I 0.15 deleterious(0.01) possibly_damaging(0.897) TCGA-29-2436-01 14 65209165 65209165 G A PLEKHG3 Missense_Mutation p.G921D 0.35 tolerated(0.17) benign(0.03) TCGA-29-2436-01 17 20806000 20806000 C T RP11-344E13.3 RNA 0.08 TCGA-29-2436-01 19 53793623 53793623 G A BIRC8 Missense_Mutation p.T2M 0.33 deleterious(0.01) benign(0.255) TCGA-29-2436-01 1 160786381 160786381 C A LY9 Intron 0.39 TCGA-29-2436-01 20 58570919 58570919 C T CDH26 Silent p.S566S 0.26 TCGA-29-2436-01 2 113147719 113147719 T G RGPD8 Missense_Mutation p.K935Q 0.22 tolerated(0.21) benign(0.315) TCGA-29-2436-01 3 11067951 11067951 G A SLC6A1 Silent p.S328S 0.31 TCGA-29-2436-01 5 140536926 140536926 C G PCDHB17 Silent p.P450P 0.04 TCGA-29-2436-01 X 53966650 53966650 G A PHF8 Silent p.R1019R 0.35 TCGA-29-A5NZ-01 10 105495551 105495551 C A SH3PXD2A Missense_Mutation p.R82L 0.11 deleterious(0) probably_damaging(0.998) TCGA-29-A5NZ-01 10 26482140 26482140 G T MYO3A Missense_Mutation p.C1482F 0.19 deleterious_low_confidence(0.04) benign(0) TCGA-29-A5NZ-01 11 105732809 105732809 G A GRIA4 Missense_Mutation p.A183T 0.25 tolerated(0.18) probably_damaging(0.945) TCGA-29-A5NZ-01 11 33564257 33564257 C G KIAA1549L Missense_Mutation p.P86R 0.20 tolerated_low_confidence(0.05) benign(0.015) TCGA-29-A5NZ-01 11 46341949 46341949 G A CREB3L1 Missense_Mutation p.D465N 0.04 tolerated_low_confidence(0.08) benign(0.051) TCGA-29-A5NZ-01 11 66475138 66475138 C T SPTBN2 Missense_Mutation p.R501H 0.09 deleterious(0) probably_damaging(0.999) TCGA-29-A5NZ-01 11 67053704 67053704 C T ADRBK1 3'UTR 0.33 TCGA-29-A5NZ-01 12 121176958 121176958 A C ACADS Missense_Mutation p.K349Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-29-A5NZ-01 12 53468543 53468543 G A SPRYD3 Missense_Mutation p.R133C 0.23 deleterious(0.04) possibly_damaging(0.729) TCGA-29-A5NZ-01 12 69158752 69158752 T A SLC35E3 3'UTR 0.04 TCGA-29-A5NZ-01 12 81101789 81101789 C T MYF6 Silent p.A97A 0.17 TCGA-29-A5NZ-01 12 86377301 86377301 G A MGAT4C Missense_Mutation p.R99W 0.34 deleterious(0) probably_damaging(0.968) TCGA-29-A5NZ-01 12 93795826 93795826 G A NUDT4 3'UTR 0.12 TCGA-29-A5NZ-01 12 98987473 98987473 C T SLC25A3 5'UTR 0.26 TCGA-29-A5NZ-01 14 105617670 105617670 C T JAG2 Missense_Mutation p.G406D 0.35 deleterious(0.05) probably_damaging(1) TCGA-29-A5NZ-01 14 105618364 105618364 C A JAG2 Missense_Mutation p.C317F 0.20 deleterious(0) probably_damaging(1) TCGA-29-A5NZ-01 14 105618560 105618560 C T JAG2 Missense_Mutation p.S286N 0.34 deleterious(0.01) probably_damaging(0.985) TCGA-29-A5NZ-01 14 21770716 21770716 G A RPGRIP1 Missense_Mutation p.G187D 0.20 tolerated(0.44) benign(0.004) TCGA-29-A5NZ-01 14 93706221 93706222 - G BTBD7 3'UTR 0.75 TCGA-29-A5NZ-01 14 95577774 95577774 C T DICER1 Silent p.L712L 0.88 TCGA-29-A5NZ-01 15 101610013 101610013 C T LRRK1 3'UTR 0.30 TCGA-29-A5NZ-01 15 20662844 20662844 A T HERC2P3 Splice_Site 0.17 TCGA-29-A5NZ-01 15 72170435 72170435 C T MYO9A Silent p.V1959V 0.24 TCGA-29-A5NZ-01 16 30779683 30779683 G A RNF40 Missense_Mutation p.R604Q 0.48 tolerated(0.51) benign(0.002) TCGA-29-A5NZ-01 16 58437121 58437121 A - GINS3 Frame_Shift_Del p.D142Ifs*63 0.15 TCGA-29-A5NZ-01 16 8736374 8736374 C A METTL22 Missense_Mutation p.A321D 0.18 tolerated(0.1) benign(0.022) TCGA-29-A5NZ-01 17 7577141 7577141 C T TP53 Missense_Mutation p.G266E 0.80 deleterious(0) probably_damaging(0.999) TCGA-29-A5NZ-01 17 78410070 78410070 C A ENDOV 3'UTR 0.33 TCGA-29-A5NZ-01 19 10664622 10664622 G C KRI1 3'UTR 0.15 TCGA-29-A5NZ-01 19 12845289 12845289 G C C19orf43 Missense_Mutation p.N61K 0.17 deleterious(0) probably_damaging(0.999) TCGA-29-A5NZ-01 19 15839222 15839222 C T OR10H2 Silent p.Y123Y 0.08 TCGA-29-A5NZ-01 19 17212590 17212590 C G MYO9B Missense_Mutation p.I21M 0.26 deleterious(0) probably_damaging(0.974) TCGA-29-A5NZ-01 19 36349434 36349434 C T KIRREL2 Silent p.S112S 0.42 TCGA-29-A5NZ-01 19 38876848 38876848 C T GGN Missense_Mutation p.D352N 0.16 deleterious_low_confidence(0) unknown(0) TCGA-29-A5NZ-01 19 42791741 42791741 C T CIC Silent p.I209I 0.21 TCGA-29-A5NZ-01 19 48602935 48602935 G C PLA2G4C Missense_Mutation p.T157S 0.17 deleterious(0.02) probably_damaging(0.917) TCGA-29-A5NZ-01 1 115319005 115319005 G C SIKE1 Missense_Mutation p.Q166E 0.22 tolerated(0.1) benign(0.228) TCGA-29-A5NZ-01 1 153654252 153654252 C T NPR1 Missense_Mutation p.H370Y 0.42 deleterious(0.01) benign(0.047) TCGA-29-A5NZ-01 1 168698279 168698279 C A DPT Missense_Mutation p.G45V 0.26 deleterious(0) probably_damaging(0.998) TCGA-29-A5NZ-01 1 175323591 175323591 C T TNR Silent p.T1106T 0.55 TCGA-29-A5NZ-01 1 207220990 207220990 T C YOD1 3'UTR 0.28 TCGA-29-A5NZ-01 1 224566652 224566652 T - CNIH4 3'UTR 0.25 TCGA-29-A5NZ-01 1 247694716 247694716 A C OR2C3 3'UTR 0.38 TCGA-29-A5NZ-01 1 28887727 28887727 A T TRNAU1AP Intron 0.30 TCGA-29-A5NZ-01 1 33790187 33790187 C T PHC2 3'UTR 0.27 TCGA-29-A5NZ-01 1 3431965 3431965 C G MEGF6 Splice_Site p.X244_splice 0.28 TCGA-29-A5NZ-01 1 37346311 37346311 C T GRIK3 Silent p.S158S 0.16 TCGA-29-A5NZ-01 1 46499512 46499512 G C MAST2 Missense_Mutation p.E1192D 0.44 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-29-A5NZ-01 1 46739853 46739853 C T RAD54L Nonsense_Mutation p.R552* 0.16 TCGA-29-A5NZ-01 22 36236388 36236388 T C RBFOX2 Intron 0.77 TCGA-29-A5NZ-01 2 141641521 141641521 A C LRP1B Missense_Mutation p.I1345R 0.33 benign(0.001) TCGA-29-A5NZ-01 2 165551691 165551691 C T COBLL1 Silent p.V775V 0.25 TCGA-29-A5NZ-01 2 220462867 220462867 T G STK11IP Missense_Mutation p.L20R 0.26 deleterious(0) possibly_damaging(0.882) TCGA-29-A5NZ-01 3 107429379 107429379 G T BBX Missense_Mutation p.K24N 0.30 deleterious(0) benign(0.424) TCGA-29-A5NZ-01 3 112992040 112992040 C T BOC Silent p.P362P 0.43 TCGA-29-A5NZ-01 3 122433205 122433205 C T PARP14 Missense_Mutation p.S1310L 0.17 tolerated(0.07) probably_damaging(0.998) TCGA-29-A5NZ-01 3 155654207 155654207 T G GMPS Missense_Mutation p.S630A 0.15 tolerated(0.05) probably_damaging(0.974) TCGA-29-A5NZ-01 3 195515522 195515522 G C MUC4 Missense_Mutation p.L977V 0.12 unknown(0) TCGA-29-A5NZ-01 3 197431509 197431509 C A KIAA0226 Nonsense_Mutation p.E123* 0.17 TCGA-29-A5NZ-01 3 22424366 22424366 G T HMGB1P5 RNA 0.17 TCGA-29-A5NZ-01 3 44952588 44952588 C T TGM4 Missense_Mutation p.T582M 0.24 tolerated(0.46) benign(0) TCGA-29-A5NZ-01 3 48965163 48965163 G T ARIH2 Nonsense_Mutation p.E58* 0.32 TCGA-29-A5NZ-01 3 56696465 56696465 A G FAM208A Silent p.L370L 0.39 TCGA-29-A5NZ-01 3 9885284 9885284 G T RPUSD3 Missense_Mutation p.H43N 0.56 tolerated(0.35) benign(0.002) TCGA-29-A5NZ-01 4 13604023 13604023 G T BOD1L1 Missense_Mutation p.Q1501K 0.21 benign(0) TCGA-29-A5NZ-01 4 147561775 147561775 C T POU4F2 Missense_Mutation p.R349C 0.17 deleterious(0) possibly_damaging(0.787) TCGA-29-A5NZ-01 4 159091889 159091889 G C FAM198B Silent p.P213P 0.20 TCGA-29-A5NZ-01 4 174448232 174448233 - G HAND2 3'UTR 0.13 TCGA-29-A5NZ-01 5 129019848 129019848 C A ADAMTS19 Missense_Mutation p.H894Q 0.62 deleterious(0.02) probably_damaging(0.998) TCGA-29-A5NZ-01 5 140257073 140257073 C T PCDHA12 Silent p.N672N 0.56 TCGA-29-A5NZ-01 5 140503479 140503479 C T PCDHB4 Silent p.D633D 0.25 TCGA-29-A5NZ-01 6 107067078 107067078 G A RTN4IP1 Missense_Mutation p.R207C 0.36 deleterious(0) probably_damaging(0.984) TCGA-29-A5NZ-01 6 107811722 107811722 G T SOBP 5'UTR 0.32 TCGA-29-A5NZ-01 6 1390701 1390701 C A FOXF2 Nonsense_Mutation p.Y173* 0.10 TCGA-29-A5NZ-01 6 39859474 39859474 G C DAAM2 Missense_Mutation p.A773P 0.23 deleterious(0.02) possibly_damaging(0.804) TCGA-29-A5NZ-01 6 53010419 53010419 G A GCM1 Silent p.D4D 0.24 TCGA-29-A5NZ-01 6 90367955 90367955 G A MDN1 Silent p.A5052A 0.31 TCGA-29-A5NZ-01 7 12727289 12727289 G A ARL4A 5'UTR 0.13 TCGA-29-A5NZ-01 7 146829418 146829418 C T CNTNAP2 Missense_Mutation p.R389W 0.31 tolerated(0.13) possibly_damaging(0.786) TCGA-29-A5NZ-01 7 19737998 19737998 C A TWISTNB Nonsense_Mutation p.E320* 0.21 TCGA-29-A5NZ-01 7 5540562 5540562 G A FBXL18 Silent p.R446R 0.48 TCGA-29-A5NZ-01 8 145584013 145584013 C T SLC52A2 Silent p.N287N 0.21 TCGA-29-A5NZ-01 8 1514061 1514061 G A DLGAP2 Splice_Site p.X401_splice 0.36 TCGA-29-A5NZ-01 8 53023878 53023878 A T ST18 3'UTR 0.24 TCGA-29-A5NZ-01 X 37027784 37027784 G A FAM47C Missense_Mutation p.R434H 0.71 tolerated_low_confidence(0.28) possibly_damaging(0.869) TCGA-36-2530-01 10 101835745 101835745 C T CPN1 Missense_Mutation p.V115I 0.51 tolerated(0.23) benign(0.01) TCGA-36-2530-01 10 105840428 105840428 C A COL17A1 Missense_Mutation p.D2Y 0.28 unknown(0) TCGA-36-2530-01 10 33491639 33491639 A G NRP1 Intron 0.52 TCGA-36-2530-01 10 5922318 5922318 G C ANKRD16 Missense_Mutation p.Q291E 0.34 tolerated(0.5) benign(0.062) TCGA-36-2530-01 11 104905082 104905082 C G CASP1 Missense_Mutation p.V43L 0.65 tolerated(0.18) benign(0.33) TCGA-36-2530-01 11 121000761 121000761 G T TECTA Missense_Mutation p.G928W 0.24 deleterious(0) benign(0.016) TCGA-36-2530-01 11 46686995 46686995 C G ATG13 Silent p.T354T 0.08 TCGA-36-2530-01 11 59224755 59224755 G T OR4D6 Missense_Mutation p.G108C 0.51 deleterious(0) probably_damaging(1) TCGA-36-2530-01 11 60637083 60637083 C T ZP1 Missense_Mutation p.A131V 0.47 tolerated(1) benign(0) TCGA-36-2530-01 11 67275483 67275497 GGGGTGCCCGGCCCA - CDK2AP2 In_Frame_Del p.G20_P24del 0.29 TCGA-36-2530-01 12 110226215 110226215 C A TRPV4 Missense_Mutation p.W733L 0.06 deleterious(0) probably_damaging(0.999) TCGA-36-2530-01 12 113314560 113314560 G A RPH3A Missense_Mutation p.G354R 0.46 tolerated(0.23) benign(0.278) TCGA-36-2530-01 12 12243719 12243719 A T BCL2L14 Missense_Mutation p.E205V 0.43 deleterious(0) possibly_damaging(0.79) TCGA-36-2530-01 12 130185032 130185032 G A TMEM132D Silent p.Y97Y 0.23 TCGA-36-2530-01 12 56620151 56620151 C T NABP2 Silent p.D128D 0.34 TCGA-36-2530-01 13 20004655 20004655 T A TPTE2 Missense_Mutation p.M419L 0.45 tolerated(0.31) benign(0.017) TCGA-36-2530-01 14 105766838 105766838 G A BRF1 Silent p.F43F 0.21 TCGA-36-2530-01 14 52194535 52194535 A - FRMD6 Frame_Shift_Del p.D554Tfs*104 0.36 TCGA-36-2530-01 15 44751205 44751205 C G CTDSPL2 5'UTR 0.49 TCGA-36-2530-01 15 75975295 75975295 T A CSPG4 Missense_Mutation p.I1513F 0.24 deleterious(0) possibly_damaging(0.495) TCGA-36-2530-01 16 11862301 11862301 C G ZC3H7A Missense_Mutation p.Q410H 0.39 tolerated(0.2) benign(0) TCGA-36-2530-01 16 19194849 19194849 G T SYT17 Splice_Site p.X111_splice 0.43 TCGA-36-2530-01 16 30982858 30982858 A G SETD1A Missense_Mutation p.E1059G 0.41 unknown(0) TCGA-36-2530-01 16 780487 780487 G A NARFL Missense_Mutation p.A454V 0.24 tolerated(0.19) benign(0.12) TCGA-36-2530-01 16 8948865 8948865 C A CARHSP1 3'UTR 0.43 TCGA-36-2530-01 17 15510908 15510908 A G RP11-385D13.1 Silent p.N714N 0.86 TCGA-36-2530-01 17 15539456 15539456 G C TRIM16 Missense_Mutation p.A248G 0.89 deleterious(0.03) benign(0.191) TCGA-36-2530-01 17 177350 177363 GCTGGGGGTGGGGA CCTGGCGGGGGGGG RPH3AL 5'UTR 0.09 TCGA-36-2530-01 17 17942245 17942245 C T ATPAF2 Missense_Mutation p.S28N 0.87 tolerated_low_confidence(0.37) benign(0.012) TCGA-36-2530-01 17 33849705 33849705 C A SLFN12L 5'UTR 0.89 TCGA-36-2530-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.93 deleterious(0) probably_damaging(0.994) TCGA-36-2530-01 17 40858140 40858140 T G EZH1 Missense_Mutation p.Y575S 0.89 deleterious(0) probably_damaging(0.991) TCGA-36-2530-01 17 73486374 73486391 TGCCTGTGGAGAGGCCCG - KIAA0195 In_Frame_Del p.A339_R344del 0.93 TCGA-36-2530-01 17 7577558 7577558 G - TP53 Frame_Shift_Del p.C242Afs*5 0.60 TCGA-36-2530-01 17 79205240 79205240 C A ENTHD2 Silent p.L284L 1.00 TCGA-36-2530-01 18 335101 335101 G T COLEC12 Missense_Mutation p.P486Q 0.88 tolerated(0.16) unknown(0) TCGA-36-2530-01 18 56939652 56939652 C G RAX Missense_Mutation p.D162H 0.89 deleterious(0) probably_damaging(1) TCGA-36-2530-01 19 10571778 10571778 C A PDE4A Silent p.T488T 0.46 TCGA-36-2530-01 19 22157526 22157526 C G ZNF208 Missense_Mutation p.E104Q 0.31 tolerated(0.39) possibly_damaging(0.594) TCGA-36-2530-01 19 36616687 36616687 C T TBCB 3'UTR 0.13 TCGA-36-2530-01 1 180601190 180601190 G T XPR1 5'UTR 0.52 TCGA-36-2530-01 1 180793950 180793950 C G XPR1 Silent p.G275G 0.43 TCGA-36-2530-01 1 190067027 190067027 T C BRINP3 3'UTR 0.38 TCGA-36-2530-01 1 204199581 204199581 C A PLEKHA6 Missense_Mutation p.S848I 0.50 deleterious(0.02) possibly_damaging(0.52) TCGA-36-2530-01 1 207224211 207224211 G C YOD1 Missense_Mutation p.D55E 0.57 tolerated(0.58) benign(0) TCGA-36-2530-01 1 236389793 236389793 C T ERO1LB Nonsense_Mutation p.W276* 0.42 TCGA-36-2530-01 1 26079974 26079974 G T MAN1C1 Splice_Site p.X279_splice 0.85 TCGA-36-2530-01 1 31532112 31532112 C T PUM1 Missense_Mutation p.G101D 0.13 deleterious_low_confidence(0.01) benign(0.055) TCGA-36-2530-01 1 44134890 44134890 C T KDM4A Missense_Mutation p.T428M 0.40 deleterious(0.05) benign(0.029) TCGA-36-2530-01 1 46660041 46660041 T G POMGNT1 Missense_Mutation p.N262H 0.27 possibly_damaging(0.847) TCGA-36-2530-01 1 53679319 53679319 G A CPT2 3'UTR 0.34 TCGA-36-2530-01 1 6170036 6170036 C T CHD5 Silent p.A1799A 0.94 TCGA-36-2530-01 20 30784386 30784386 G A PLAGL2 Nonsense_Mutation p.Q454* 0.44 TCGA-36-2530-01 21 18966581 18966581 G A BTG3 Nonsense_Mutation p.R241* 0.90 TCGA-36-2530-01 21 44836782 44836782 T A SIK1 Missense_Mutation p.H731L 0.80 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-36-2530-01 22 45574641 45574641 T A NUP50 Missense_Mutation p.V288D 0.05 tolerated(0.11) benign(0.033) TCGA-36-2530-01 2 11053429 11053429 C T KCNF1 Missense_Mutation p.R293W 0.51 deleterious(0) probably_damaging(1) TCGA-36-2530-01 2 118586868 118586868 G C DDX18 Missense_Mutation p.E566Q 0.10 deleterious(0.01) benign(0.16) TCGA-36-2530-01 2 1507728 1507728 G A TPO Missense_Mutation p.E799K 0.20 deleterious(0) probably_damaging(0.995) TCGA-36-2530-01 2 179641962 179641962 T G TTN Missense_Mutation p.K1576N 0.23 TCGA-36-2530-01 2 20871081 20871081 C A GDF7 Missense_Mutation p.P417T 0.72 deleterious(0) probably_damaging(0.991) TCGA-36-2530-01 2 219619197 219619197 C T TTLL4 3'UTR 0.33 TCGA-36-2530-01 2 227662615 227662615 G A IRS1 Silent p.I280I 0.44 TCGA-36-2530-01 2 228884300 228884300 C A SPHKAP Missense_Mutation p.V424L 0.49 tolerated(0.23) benign(0.008) TCGA-36-2530-01 2 25505532 25505532 G A DNMT3A Missense_Mutation p.P76S 0.63 tolerated_low_confidence(0.51) benign(0) TCGA-36-2530-01 2 28821575 28821575 G C PLB1 Missense_Mutation p.A808P 0.40 tolerated(0.11) benign(0.248) TCGA-36-2530-01 3 112358642 112358642 T A CCDC80 Missense_Mutation p.K37N 0.44 deleterious_low_confidence(0.03) benign(0) TCGA-36-2530-01 3 121383290 121383290 G A GOLGB1 3'UTR 0.08 TCGA-36-2530-01 3 169664517 169664517 C T RP11-379K17.4 RNA 0.25 TCGA-36-2530-01 3 179470151 179470151 C G USP13 Silent p.P596P 0.34 TCGA-36-2530-01 3 93603626 93603626 C G PROS1 Missense_Mutation p.E480Q 0.45 deleterious(0.03) probably_damaging(0.938) TCGA-36-2530-01 4 3416554 3416554 G T RGS12 Missense_Mutation p.A756S 0.26 deleterious(0.03) possibly_damaging(0.688) TCGA-36-2530-01 4 71508977 71508977 T A ENAM Missense_Mutation p.S612T 0.78 tolerated(0.08) possibly_damaging(0.64) TCGA-36-2530-01 4 84457593 84457593 G A AGPAT9 Intron 0.86 TCGA-36-2530-01 5 131630261 131630261 A G SLC22A4 5'UTR 0.41 TCGA-36-2530-01 5 70671702 70671702 A C RP11-136K7.2 Intron 0.89 TCGA-36-2530-01 5 98215409 98215437 ATCCATATTTGAGAAGTTGGCAACCTGAT - CHD1 Splice_Site p.X1021_splice 0.33 TCGA-36-2530-01 6 117114178 117114178 G A GPRC6A Silent p.I636I 0.03 TCGA-36-2530-01 6 41185623 41185623 G T TREML3P RNA 0.47 TCGA-36-2530-01 6 82460166 82460166 A C FAM46A Missense_Mutation p.V192G 0.55 deleterious(0) probably_damaging(1) TCGA-36-2530-01 7 144060494 144060494 A G ARHGEF5 Silent p.G244G 0.16 TCGA-36-2530-01 7 624149 624149 G C PRKAR1B Missense_Mutation p.I255M 0.88 deleterious(0.01) possibly_damaging(0.54) TCGA-36-2530-01 8 23059380 23059380 G C TNFRSF10A Missense_Mutation p.C190W 0.46 deleterious(0) probably_damaging(1) TCGA-36-2530-01 8 23118255 23118255 C A CHMP7 3'UTR 0.44 TCGA-36-2530-01 8 42171902 42171902 C T IKBKB Missense_Mutation p.T252M 0.89 deleterious(0) benign(0.436) TCGA-36-2530-01 8 72964842 72964842 C G TRPA1 Missense_Mutation p.R601S 0.42 tolerated(0.48) benign(0.33) TCGA-36-2530-01 9 114393962 114393962 G C DNAJC25-GNG10 Missense_Mutation p.R92P 0.29 tolerated(0.12) benign(0.219) TCGA-36-2530-01 9 115805102 115805102 T A ZFP37 Missense_Mutation p.K599I 0.32 deleterious(0) probably_damaging(1) TCGA-36-2530-01 9 117092749 117092749 T C ORM2 Silent p.F50F 0.30 TCGA-36-2530-01 9 126777578 126777578 G C LHX2 Missense_Mutation p.L167F 0.67 tolerated(0.65) probably_damaging(0.998) TCGA-36-2530-01 9 128201085 128201085 G A MAPKAP1 3'UTR 0.39 TCGA-36-2530-01 9 131085051 131085051 G T COQ4 5'UTR 0.22 TCGA-36-2530-01 9 132984935 132984935 T G NCS1 Missense_Mutation p.F105C 0.35 deleterious(0) probably_damaging(1) TCGA-36-2530-01 9 134136439 134136439 T C FAM78A Missense_Mutation p.T208A 0.35 deleterious(0.05) probably_damaging(0.994) TCGA-36-2530-01 9 135545542 135545542 C T DDX31 Missense_Mutation p.R32K 0.37 deleterious_low_confidence(0) benign(0.067) TCGA-36-2530-01 9 19050779 19050779 C A RRAGA 3'UTR 0.64 TCGA-36-2530-01 9 71840954 71840954 C T TJP2 Missense_Mutation p.T389I 0.46 deleterious(0) probably_damaging(0.976) TCGA-36-2530-01 X 148797274 148797274 A G MAGEA11 Missense_Mutation p.E68G 0.05 tolerated_low_confidence(1) possibly_damaging(0.727) TCGA-36-2530-01 X 153033787 153033787 G A PLXNB3 Silent p.L413L 0.73 TCGA-36-2530-01 X 49066098 49066098 G A CACNA1F Silent p.S1615S 0.86 TCGA-36-2530-01 X 77150805 77150805 C T MAGT1 Splice_Site p.X66_splice 0.58 TCGA-36-2532-01 10 103899913 103899913 G C PPRC1 Missense_Mutation p.A550P 0.76 deleterious_low_confidence(0.03) benign(0.439) TCGA-36-2532-01 10 23292194 23292194 G A ARMC3 Missense_Mutation p.E528K 0.24 deleterious(0) possibly_damaging(0.786) TCGA-36-2532-01 10 29773679 29773679 G A SVIL Nonsense_Mutation p.Q1621* 0.03 TCGA-36-2532-01 10 31134108 31134108 A G ZNF438 Missense_Mutation p.C757R 0.68 tolerated(0.38) benign(0) TCGA-36-2532-01 10 54527920 54527920 C T MBL2 Missense_Mutation p.A242T 0.79 tolerated(0.1) possibly_damaging(0.686) TCGA-36-2532-01 10 82187242 82187242 C T FAM213A Missense_Mutation p.S189L 0.17 tolerated(0.1) benign(0.201) TCGA-36-2532-01 11 47198065 47198065 A - ARFGAP2 Splice_Site p.X64_splice 0.30 TCGA-36-2532-01 11 73021631 73021631 G A ARHGEF17 Missense_Mutation p.A650T 0.51 tolerated_low_confidence(1) benign(0.001) TCGA-36-2532-01 11 7531010 7531010 C G OLFML1 Nonsense_Mutation p.S267* 0.05 TCGA-36-2532-01 11 7531047 7531047 C G OLFML1 Silent p.L279L 0.04 TCGA-36-2532-01 12 104089393 104089393 G T STAB2 Missense_Mutation p.M1147I 0.39 tolerated(0.13) probably_damaging(0.977) TCGA-36-2532-01 12 117290288 117290288 A C RNFT2 3'Flank 0.34 TCGA-36-2532-01 15 23689165 23689165 G A GOLGA6L2 Missense_Mutation p.A117V 0.47 possibly_damaging(0.623) TCGA-36-2532-01 15 41148489 41148489 G A SPINT1 Missense_Mutation p.G451D 0.42 tolerated(0.06) benign(0.111) TCGA-36-2532-01 16 66545736 66545736 G C TK2 3'UTR 0.92 TCGA-36-2532-01 16 72137913 72137913 G A DHX38 Silent p.G631G 0.79 TCGA-36-2532-01 17 2282502 2282502 G A SGSM2 Intron 0.70 TCGA-36-2532-01 17 29557332 29557332 G - NF1 Frame_Shift_Del p.C1016Vfs*3 0.40 TCGA-36-2532-01 17 4857022 4857022 A G ENO3 Missense_Mutation p.N109S 0.70 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-36-2532-01 17 7578442 7578442 T C TP53 Missense_Mutation p.Y163C 0.80 deleterious(0) probably_damaging(0.999) TCGA-36-2532-01 1 111957050 111957050 A T OVGP1 3'UTR 0.35 TCGA-36-2532-01 1 150936528 150936528 C T SETDB1 Missense_Mutation p.R1243C 0.02 deleterious(0) probably_damaging(0.998) TCGA-36-2532-01 1 151381209 151381213 ACGGA - POGZ Frame_Shift_Del p.F673* 0.51 TCGA-36-2532-01 1 182869023 182869023 A C SHCBP1L 3'UTR 0.38 TCGA-36-2532-01 1 201798345 201798345 C T IPO9 Missense_Mutation p.A3V 0.46 tolerated_low_confidence(0.06) unknown(0) TCGA-36-2532-01 1 31346169 31346169 C A SDC3 Silent p.L406L 0.42 TCGA-36-2532-01 1 36479559 36479559 G A AGO3 Missense_Mutation p.R439Q 0.43 tolerated(0.07) possibly_damaging(0.714) TCGA-36-2532-01 1 9782090 9782090 A G PIK3CD Missense_Mutation p.K705E 0.40 tolerated(0.05) possibly_damaging(0.566) TCGA-36-2532-01 20 24950955 24950955 C A APMAP Missense_Mutation p.M197I 0.43 tolerated(0.21) benign(0) TCGA-36-2532-01 20 25472099 25472099 C T NINL Missense_Mutation p.R458Q 0.03 tolerated(0.14) benign(0.01) TCGA-36-2532-01 20 5096209 5096209 C G PCNA Missense_Mutation p.E198Q 0.04 tolerated(0.12) benign(0.05) TCGA-36-2532-01 22 21383181 21383181 C T SLC7A4 3'UTR 0.89 TCGA-36-2532-01 2 109098183 109098183 G C GCC2 Missense_Mutation p.E1031Q 0.41 deleterious(0) possibly_damaging(0.575) TCGA-36-2532-01 2 172965648 172965648 G A DLX2 Missense_Mutation p.R204W 0.40 deleterious(0) probably_damaging(1) TCGA-36-2532-01 3 125649450 125649450 C G ALG1L Missense_Mutation p.E100Q 0.28 tolerated(0.09) probably_damaging(0.924) TCGA-36-2532-01 3 128292556 128292556 T A C3orf27 Missense_Mutation p.H6L 0.37 benign(0.402) TCGA-36-2532-01 3 138724617 138724617 G A PRR23A Missense_Mutation p.P165L 0.34 tolerated(1) benign(0.009) TCGA-36-2532-01 3 180630485 180630485 G A FXR1 Silent p.L4L 0.03 TCGA-36-2532-01 3 182575809 182575809 G C ATP11B Missense_Mutation p.S332T 0.48 tolerated(0.54) benign(0.08) TCGA-36-2532-01 3 183381322 183381322 G A KLHL24 Missense_Mutation p.E333K 0.03 deleterious(0.02) possibly_damaging(0.811) TCGA-36-2532-01 3 48605019 48605019 C G COL7A1 Silent p.L2678L 0.04 TCGA-36-2532-01 3 53779712 53779712 C G CACNA1D Missense_Mutation p.T1043S 0.41 tolerated(0.06) probably_damaging(0.994) TCGA-36-2532-01 5 139232565 139232565 G A NRG2 Missense_Mutation p.P447L 0.40 deleterious(0.04) possibly_damaging(0.557) TCGA-36-2532-01 5 140482498 140482498 G A PCDHB3 Silent p.L755L 0.35 TCGA-36-2532-01 5 33937765 33937765 C T RXFP3 Missense_Mutation p.A307V 0.31 tolerated(0.44) benign(0.004) TCGA-36-2532-01 5 83680210 83680210 G C EDIL3 5'UTR 0.04 TCGA-36-2532-01 6 28057043 28057043 A G ZNF165 Missense_Mutation p.H418R 0.32 deleterious(0) probably_damaging(0.998) TCGA-36-2532-01 6 40360135 40360135 G T LRFN2 Silent p.P639P 0.65 TCGA-36-2532-01 7 100686898 100686898 T G MUC17 Silent p.P4067P 0.44 TCGA-36-2532-01 7 77423646 77423646 G A TMEM60 Silent p.F15F 0.38 TCGA-36-2532-01 8 145582858 145582858 C G SLC52A2 5'UTR 0.26 TCGA-36-2532-01 8 145583350 145583350 C T SLC52A2 Silent p.T66T 0.32 TCGA-36-2532-01 8 145583713 145583713 C A SLC52A2 Missense_Mutation p.F187L 0.18 tolerated(0.78) benign(0.008) TCGA-36-2532-01 8 145583754 145583754 C G SLC52A2 Missense_Mutation p.T201S 0.19 tolerated(0.57) benign(0.007) TCGA-36-2532-01 8 145583844 145583844 C G SLC52A2 Nonsense_Mutation p.S231* 0.23 TCGA-36-2532-01 8 145584055 145584055 C T SLC52A2 Silent p.S301S 0.28 TCGA-36-2532-01 8 15397958 15397958 C A TUSC3 Missense_Mutation p.P7T 0.38 deleterious_low_confidence(0) unknown(0) TCGA-36-2532-01 8 27369416 27369416 G A EPHX2 Missense_Mutation p.V242M 0.39 deleterious(0) benign(0.182) TCGA-36-2532-01 8 72935129 72935129 A G TRPA1 3'UTR 0.47 TCGA-36-2532-01 9 115421709 115421709 G A KIAA1958 Missense_Mutation p.S504N 0.51 tolerated(0.27) benign(0) TCGA-36-2532-01 9 117113156 117113156 G A AKNA Silent p.L1068L 0.05 TCGA-36-2532-01 9 139872144 139872144 G A PTGDS Silent p.K38K 0.11 TCGA-36-2532-01 9 140081941 140081941 G A ANAPC2 Silent p.S244S 0.57 TCGA-36-2532-01 9 20912864 20912864 G A FOCAD Splice_Site p.X907_splice 0.31 TCGA-36-2532-01 9 91995988 91995988 C T SEMA4D Missense_Mutation p.D549N 0.11 tolerated(0.07) benign(0.017) TCGA-36-2532-01 X 111698666 111698666 C T ZCCHC16 Missense_Mutation p.S237F 0.40 tolerated(0.08) benign(0.091) TCGA-36-2533-01 10 15647732 15647732 G A ITGA8 Missense_Mutation p.S654L 0.17 deleterious(0) possibly_damaging(0.733) TCGA-36-2533-01 10 43088068 43088068 T C ZNF33B Missense_Mutation p.Y777C 0.20 deleterious(0.04) benign(0.002) TCGA-36-2533-01 10 54531208 54531217 CCTGGTTCCC - MBL2 Splice_Site p.X60_splice 0.17 TCGA-36-2533-01 11 111957585 111957585 C A SDHD 5'UTR 0.57 TCGA-36-2533-01 11 122944324 122944324 C A CLMP Missense_Mutation p.G327V 0.22 tolerated(0.09) benign(0.221) TCGA-36-2533-01 11 34978943 34978943 A G PDHX Missense_Mutation p.S119G 0.17 deleterious(0) possibly_damaging(0.626) TCGA-36-2533-01 11 58190471 58190471 C G OR5B2 Missense_Mutation p.K88N 0.20 tolerated_low_confidence(0.13) benign(0.013) TCGA-36-2533-01 11 64897614 64897616 GTT - SYVN1 In_Frame_Del p.T424del 0.13 TCGA-36-2533-01 11 67174357 67174357 C G TBC1D10C Missense_Mutation p.H236Q 0.41 tolerated(0.61) benign(0) TCGA-36-2533-01 11 67209508 67209508 C G CORO1B Missense_Mutation p.V85L 0.04 deleterious(0.01) probably_damaging(0.982) TCGA-36-2533-01 12 123186799 123186799 C G HCAR2 Silent p.A344A 0.13 TCGA-36-2533-01 12 40645170 40645170 C G LRRK2 Missense_Mutation p.H365Q 0.50 tolerated(0.63) benign(0.003) TCGA-36-2533-01 12 52754812 52754812 C G KRT85 Missense_Mutation p.G450A 0.13 deleterious(0.01) probably_damaging(0.991) TCGA-36-2533-01 12 53170780 53170780 C A KRT76 Missense_Mutation p.G99V 0.37 tolerated(0.13) unknown(0) TCGA-36-2533-01 12 56435757 56435757 A C RPS26 5'UTR 0.35 TCGA-36-2533-01 12 57920600 57920601 CA - MBD6 Frame_Shift_Del p.H558Qfs*16 0.28 TCGA-36-2533-01 12 7054969 7054969 G A C12orf57 Missense_Mutation p.E89K 0.51 tolerated(0.08) benign(0.006) TCGA-36-2533-01 13 42877816 42877816 A G AKAP11 Missense_Mutation p.D1645G 0.05 deleterious(0) probably_damaging(0.983) TCGA-36-2533-01 13 43872524 43872524 C A ENOX1 Missense_Mutation p.Q468H 0.34 tolerated(0.06) benign(0.001) TCGA-36-2533-01 13 51825732 51825732 C G FAM124A Missense_Mutation p.P113A 0.49 deleterious(0.05) benign(0.209) TCGA-36-2533-01 14 102675779 102675780 TG - WDR20 Frame_Shift_Del p.V456Afs*43 0.13 TCGA-36-2533-01 14 21993152 21993152 G A SALL2 Missense_Mutation p.P237L 0.16 deleterious(0.03) possibly_damaging(0.548) TCGA-36-2533-01 14 21993153 21993153 G T SALL2 Missense_Mutation p.P237T 0.16 tolerated(0.09) benign(0.025) TCGA-36-2533-01 14 23549291 23549293 CCT - ACIN1 In_Frame_Del p.G476del 0.31 TCGA-36-2533-01 14 39639249 39639249 T A TRAPPC6B Silent p.G17G 0.03 TCGA-36-2533-01 14 39650026 39650026 G C PNN Missense_Mutation p.E371D 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.718) TCGA-36-2533-01 15 39885816 39885816 C A THBS1 Missense_Mutation p.P1072T 0.17 tolerated(0.32) benign(0.045) TCGA-36-2533-01 15 52356635 52356635 T A MAPK6 Missense_Mutation p.I535N 0.41 deleterious_low_confidence(0) possibly_damaging(0.74) TCGA-36-2533-01 16 16267249 16267249 T G ABCC6 Silent p.S893S 0.18 TCGA-36-2533-01 16 19195409 19195409 G T SYT17 Missense_Mutation p.L297F 0.12 deleterious(0) probably_damaging(0.999) TCGA-36-2533-01 16 19195414 19195414 A T SYT17 Missense_Mutation p.E299V 0.12 deleterious(0.04) benign(0.025) TCGA-36-2533-01 16 24581309 24581309 C T RBBP6 Nonsense_Mutation p.Q1100* 0.25 TCGA-36-2533-01 16 27457369 27457369 T G IL21R Missense_Mutation p.F276C 0.22 deleterious(0) probably_damaging(1) TCGA-36-2533-01 16 2815985 2815985 G A SRRM2 Missense_Mutation p.G1819D 0.18 unknown(0) TCGA-36-2533-01 16 29872538 29872548 CAGCGGTCCGT - CDIPT Frame_Shift_Del p.T71Lfs*44 0.59 TCGA-36-2533-01 16 30965038 30965038 C A ORAI3 Missense_Mutation p.P254H 0.49 deleterious(0) probably_damaging(1) TCGA-36-2533-01 16 47117252 47117252 T C NETO2 Silent p.K486K 0.16 TCGA-36-2533-01 17 10304450 10304450 C T MYH8 Missense_Mutation p.R1056Q 0.31 deleterious(0) possibly_damaging(0.848) TCGA-36-2533-01 17 12666922 12666922 T A MYOCD Missense_Mutation p.N974K 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-36-2533-01 17 27901865 27901866 CT - GIT1 Frame_Shift_Del p.S723* 0.30 TCGA-36-2533-01 17 27963139 27963139 C A SSH2 Missense_Mutation p.M676I 0.35 tolerated_low_confidence(0.48) benign(0.002) TCGA-36-2533-01 17 48562147 48562147 T A RSAD1 Silent p.S418S 0.30 TCGA-36-2533-01 17 6690856 6690856 C T FBXO39 3'UTR 0.80 TCGA-36-2533-01 17 73733410 73733410 G A ITGB4 Silent p.E666E 0.30 TCGA-36-2533-01 17 7579313 7579313 G A TP53 Missense_Mutation p.T125M 0.73 deleterious(0.03) probably_damaging(0.996) TCGA-36-2533-01 17 80053327 80053327 C T FASN Missense_Mutation p.R50Q 0.69 deleterious(0) probably_damaging(0.998) TCGA-36-2533-01 19 10468414 10468445 AGGGCCCAAGGGTCTCCTAGACATACCTCGGA - TYK2 Splice_Site p.X821_splice 0.22 TCGA-36-2533-01 19 14077444 14077444 C A RFX1 Splice_Site p.X617_splice 0.27 TCGA-36-2533-01 19 19651023 19651023 G C CILP2 Missense_Mutation p.E58D 0.24 deleterious(0.03) possibly_damaging(0.827) TCGA-36-2533-01 19 42880299 42880301 TCT - MEGF8 In_Frame_Del p.F2572del 0.17 TCGA-36-2533-01 19 45262720 45262721 CA - BCL3 Frame_Shift_Del p.Q405Vfs*61 0.23 TCGA-36-2533-01 19 49658196 49658196 C A HRC Missense_Mutation p.G100V 0.18 deleterious(0.01) benign(0.145) TCGA-36-2533-01 19 50982299 50982299 C A EMC10 Missense_Mutation p.S91R 0.17 deleterious(0.01) possibly_damaging(0.694) TCGA-36-2533-01 19 5843995 5843995 G A FUT3 Missense_Mutation p.P286S 0.40 deleterious(0) probably_damaging(1) TCGA-36-2533-01 1 110466731 110466732 TG - CSF1 Frame_Shift_Del p.V497Lfs*50 0.53 TCGA-36-2533-01 1 111147503 111147503 T A KCNA2 5'UTR 0.36 TCGA-36-2533-01 1 112028382 112028384 CTC - ADORA3 In_Frame_Del p.R318del 0.31 TCGA-36-2533-01 1 119575848 119575848 C G WARS2 Missense_Mutation p.D257H 0.40 deleterious(0) probably_damaging(1) TCGA-36-2533-01 1 149783748 149783748 T C HIST2H2BF Missense_Mutation p.K44R 0.17 tolerated_low_confidence(0.06) possibly_damaging(0.894) TCGA-36-2533-01 1 155630015 155630016 CA - YY1AP1 Frame_Shift_Del p.V700Efs*10 0.30 TCGA-36-2533-01 1 162468013 162468014 AA - UHMK1 Frame_Shift_Del p.K75Rfs*37 0.21 TCGA-36-2533-01 1 19441927 19441927 G A UBR4 Silent p.N3676N 0.08 TCGA-36-2533-01 1 229685102 229685102 G T ABCB10 Silent p.I199I 0.55 TCGA-36-2533-01 1 31907017 31907019 CTC - SERINC2 In_Frame_Del p.L458del 0.45 TCGA-36-2533-01 1 32829205 32829206 AG - TSSK3 Frame_Shift_Del p.R53Ifs*22 0.18 TCGA-36-2533-01 1 67337151 67337151 A C WDR78 Nonsense_Mutation p.L281* 0.31 TCGA-36-2533-01 1 70652990 70652993 GAAG - LRRC40 Frame_Shift_Del p.P121Lfs*3 0.26 TCGA-36-2533-01 20 36022358 36022358 C T SRC Silent p.S137S 0.25 TCGA-36-2533-01 20 377247 377247 G A TRIB3 Nonsense_Mutation p.W330* 0.26 TCGA-36-2533-01 20 47244476 47244476 G T PREX1 Missense_Mutation p.Q1598K 0.31 deleterious(0.03) possibly_damaging(0.838) TCGA-36-2533-01 20 62630983 62630983 C A PRPF6 Silent p.L298L 0.24 TCGA-36-2533-01 22 22277487 22277487 G T PPM1F Missense_Mutation p.T448N 0.32 tolerated_low_confidence(0.13) benign(0.006) TCGA-36-2533-01 22 23596071 23596071 C G BCR Nonsense_Mutation p.Y455* 0.37 TCGA-36-2533-01 2 132254864 132254864 C G MZT2A 5'Flank 0.16 TCGA-36-2533-01 2 141215097 141215098 GA - LRP1B Frame_Shift_Del p.S3250Tfs*18 0.24 TCGA-36-2533-01 2 162865112 162865112 A G DPP4 Silent p.C649C 0.15 TCGA-36-2533-01 2 179613334 179613334 G T TTN Intron 0.35 TCGA-36-2533-01 2 182542453 182542453 A G NEUROD1 3'UTR 0.23 TCGA-36-2533-01 2 217234805 217234805 G A MARCH4 Missense_Mutation p.A60V 0.25 tolerated_low_confidence(0.05) benign(0.049) TCGA-36-2533-01 2 239037432 239037432 G A ESPNL Missense_Mutation p.G434R 0.38 tolerated(0.06) benign(0.135) TCGA-36-2533-01 3 100274162 100274162 G A TMEM45A Missense_Mutation p.R36Q 0.32 tolerated(0.12) benign(0.066) TCGA-36-2533-01 3 112647884 112647884 T - CD200R1 Frame_Shift_Del p.N183Tfs*39 0.19 TCGA-36-2533-01 3 119534576 119534576 G A NR1I2 Missense_Mutation p.R392H 0.07 tolerated(0.05) probably_damaging(0.997) TCGA-36-2533-01 3 183858257 183858257 C T EIF2B5 Missense_Mutation p.R299C 0.22 tolerated(0.07) possibly_damaging(0.627) TCGA-36-2533-01 3 186761001 186761001 C G ST6GAL1 Silent p.P170P 0.36 TCGA-36-2533-01 3 195955131 195955131 C G SLC51A Missense_Mutation p.L170V 0.17 tolerated(1) benign(0.024) TCGA-36-2533-01 3 37061951 37061951 C G MLH1 Silent p.T345T 0.21 TCGA-36-2533-01 3 39225777 39225777 C T XIRP1 Silent p.G1720G 0.19 TCGA-36-2533-01 3 48420930 48420930 C A FBXW12 Missense_Mutation p.P219H 0.25 deleterious(0) probably_damaging(0.99) TCGA-36-2533-01 4 177071318 177071318 T - WDR17 Frame_Shift_Del p.L749Yfs*16 0.17 TCGA-36-2533-01 4 47428009 47428009 G A GABRB1 Missense_Mutation p.V467I 0.17 tolerated(0.48) benign(0.044) TCGA-36-2533-01 5 139942247 139942247 C A APBB3 Splice_Site p.X117_splice 0.05 TCGA-36-2533-01 5 140501624 140501624 C A PCDHB4 Missense_Mutation p.A15D 0.08 deleterious_low_confidence(0.03) benign(0.14) TCGA-36-2533-01 5 145529206 145529206 A T LARS Silent p.I494I 0.19 TCGA-36-2533-01 5 178634695 178634695 T C ADAMTS2 Missense_Mutation p.D237G 0.38 tolerated(0.8) benign(0.001) TCGA-36-2533-01 5 9630017 9630017 G A TAS2R1 Missense_Mutation p.P43L 0.47 deleterious(0) possibly_damaging(0.818) TCGA-36-2533-01 6 11010983 11010983 C T ELOVL2 Silent p.P21P 0.18 TCGA-36-2533-01 6 116747991 116747991 G T DSE Splice_Site p.X224_splice 0.30 TCGA-36-2533-01 6 30457652 30457652 T A HLA-E Missense_Mutation p.W72R 0.45 deleterious_low_confidence(0) probably_damaging(1) TCGA-36-2533-01 6 33382137 33382137 G A PHF1 Silent p.L290L 0.18 TCGA-36-2533-01 6 43100368 43100368 T A PTK7 Missense_Mutation p.C399S 0.23 deleterious(0) probably_damaging(0.997) TCGA-36-2533-01 7 100482647 100482649 AGA - SRRT In_Frame_Del p.K383del 0.28 TCGA-36-2533-01 7 121701362 121701362 G T PTPRZ1 3'UTR 0.14 TCGA-36-2533-01 7 128784897 128784899 TCT - TSPAN33 In_Frame_Del p.F29del 0.12 TCGA-36-2533-01 7 44152694 44152696 AAC - AEBP1 In_Frame_Del p.N893del 0.40 TCGA-36-2533-01 7 45931586 45931586 A G IGFBP1 Missense_Mutation p.E192G 0.32 deleterious(0) possibly_damaging(0.665) TCGA-36-2533-01 7 49815026 49815026 T A VWC2 5'UTR 0.09 TCGA-36-2533-01 8 102582623 102582623 G A GRHL2 Splice_Site p.X245_splice 0.42 TCGA-36-2533-01 8 131921955 131921955 C T ADCY8 Missense_Mutation p.G547R 0.10 deleterious(0) probably_damaging(1) TCGA-36-2533-01 8 133726253 133726253 G C TMEM71 Missense_Mutation p.T268S 0.08 deleterious(0.04) benign(0.136) TCGA-36-2533-01 8 139164354 139164354 G T FAM135B Silent p.T788T 0.27 TCGA-36-2533-01 8 144620674 144620674 C A ZC3H3 Missense_Mutation p.G288V 0.55 tolerated(0.07) possibly_damaging(0.813) TCGA-36-2533-01 8 146016693 146016695 CTT - RPL8 In_Frame_Del p.K156del 0.16 TCGA-36-2533-01 8 41122938 41122940 CTT - SFRP1 In_Frame_Del p.K231del 0.18 TCGA-36-2533-01 8 53049163 53049163 A T ST18 Missense_Mutation p.S763T 0.39 tolerated(0.11) probably_damaging(0.952) TCGA-36-2533-01 8 92355635 92355635 C A SLC26A7 Missense_Mutation p.P361T 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-36-2533-01 8 95505026 95505026 T G KIAA1429 Missense_Mutation p.E1554D 0.38 tolerated(0.54) benign(0.009) TCGA-36-2533-01 9 127933430 127933432 GAG - PPP6C In_Frame_Del p.L72del 0.37 TCGA-36-2533-01 9 131117388 131117388 G A SLC27A4 Missense_Mutation p.D461N 0.24 tolerated(0.51) probably_damaging(0.928) TCGA-36-2533-01 9 3330438 3330486 TCCCTTGAGTATCAAAGTAATTCCCTCCAGTATTTTGGCTGTACATCTG - RFX3 Frame_Shift_Del p.Q83Vfs*5 0.34 TCGA-36-2533-01 X 108779198 108779198 C A NXT2 Missense_Mutation p.S29R 0.18 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-36-2533-01 X 114864146 114864146 G A PLS3 Splice_Site p.X123_splice 0.15 TCGA-36-2533-01 X 122532605 122532605 C T GRIA3 Missense_Mutation p.P344L 0.31 tolerated(0.06) benign(0.298) TCGA-36-2533-01 X 53117199 53117199 A C TSPYL2 3'UTR 0.11 TCGA-36-2533-01 X 57313447 57313447 A - FAAH2 Frame_Shift_Del p.K64Rfs*2 0.33 TCGA-36-2533-01 X 66765620 66765620 C T AR Missense_Mutation p.A211V 0.51 tolerated_low_confidence(0.34) benign(0.012) TCGA-36-2534-01 10 102053121 102053121 T C PKD2L1 Missense_Mutation p.I559V 0.81 deleterious(0.01) possibly_damaging(0.855) TCGA-36-2534-01 10 118236316 118236316 G C PNLIPRP3 Missense_Mutation p.G442A 0.14 deleterious(0.04) possibly_damaging(0.775) TCGA-36-2534-01 10 45799431 45799431 G A OR13A1 Missense_Mutation p.P147L 0.91 deleterious(0.01) benign(0.207) TCGA-36-2534-01 10 93702253 93702253 A G BTAF1 Missense_Mutation p.R110G 0.44 deleterious(0.02) benign(0.244) TCGA-36-2534-01 11 103908178 103908178 G - DDI1 Frame_Shift_Del p.A210Lfs*5 0.49 TCGA-36-2534-01 11 118014566 118014566 G C SCN4B Missense_Mutation p.L149V 0.43 deleterious(0.02) possibly_damaging(0.7) TCGA-36-2534-01 11 130342955 130342955 T A ADAMTS15 Missense_Mutation p.F698I 0.10 deleterious(0.02) probably_damaging(1) TCGA-36-2534-01 11 236209 236209 A T SIRT3 Silent p.L40L 0.84 TCGA-36-2534-01 11 47436071 47436071 T G SLC39A13 Intron 0.47 TCGA-36-2534-01 11 4869934 4869934 A T OR51S1 Missense_Mutation p.F169I 0.10 tolerated(0.27) benign(0.094) TCGA-36-2534-01 11 552165 552165 G A LRRC56 Missense_Mutation p.D372N 0.76 deleterious(0.01) possibly_damaging(0.907) TCGA-36-2534-01 11 59211067 59211067 C T OR5A1 Silent p.G142G 0.35 TCGA-36-2534-01 11 62298134 62298134 A C AHNAK Missense_Mutation p.L1252R 0.10 probably_damaging(0.97) TCGA-36-2534-01 11 62374563 62374563 C G EML3 Missense_Mutation p.K457N 0.42 deleterious(0.03) probably_damaging(0.998) TCGA-36-2534-01 11 62564015 62564015 T G NXF1 Silent p.G401G 0.06 TCGA-36-2534-01 11 62747321 62747321 C G SLC22A6 Silent p.L379L 0.42 TCGA-36-2534-01 11 65554906 65554906 A T OVOL1 Missense_Mutation p.E21V 0.38 deleterious(0) benign(0.329) TCGA-36-2534-01 11 68853169 68853169 T C TPCN2 Silent p.C623C 0.47 TCGA-36-2534-01 11 7661068 7661068 C T PPFIBP2 Missense_Mutation p.P448S 0.39 tolerated(0.34) benign(0.001) TCGA-36-2534-01 11 8704142 8704142 C T RPL27A 5'UTR 0.14 TCGA-36-2534-01 11 92887287 92887287 C A SLC36A4 Missense_Mutation p.L398F 0.46 deleterious(0) possibly_damaging(0.817) TCGA-36-2534-01 12 2930926 2930926 C G ITFG2 Missense_Mutation p.Q306E 0.45 deleterious(0.02) benign(0.012) TCGA-36-2534-01 12 40681174 40681174 G C LRRK2 Missense_Mutation p.R841T 0.05 deleterious(0) possibly_damaging(0.786) TCGA-36-2534-01 12 46211571 46211587 ATGCACTCTCCTATCAA - ARID2 Frame_Shift_Del p.C180* 0.20 TCGA-36-2534-01 12 49521682 49521682 T G TUBA1B 3'UTR 0.44 TCGA-36-2534-01 12 54764729 54764729 C G ZNF385A Silent p.S272S 0.05 TCGA-36-2534-01 12 56355206 56355206 G C PMEL Missense_Mutation p.L77V 0.43 deleterious(0) probably_damaging(0.999) TCGA-36-2534-01 12 56742953 56742953 G T STAT2 Missense_Mutation p.N478K 0.44 tolerated(0.09) benign(0.021) TCGA-36-2534-01 12 91371994 91371994 T G EPYC Missense_Mutation p.T71P 0.07 tolerated(0.25) benign(0.001) TCGA-36-2534-01 14 101200673 101200673 G A DLK1 Missense_Mutation p.A198T 0.78 tolerated(0.55) benign(0.042) TCGA-36-2534-01 14 23829010 23829010 G A EFS Missense_Mutation p.A226V 0.41 tolerated(0.26) possibly_damaging(0.696) TCGA-36-2534-01 14 25044514 25044514 C A CTSG Missense_Mutation p.V54L 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-36-2534-01 14 59931606 59931606 G A GPR135 Silent p.I113I 0.21 TCGA-36-2534-01 14 70714265 70714265 G T ADAM21P1 RNA 0.37 TCGA-36-2534-01 14 72961965 72961965 G C RGS6 Missense_Mutation p.E320D 0.05 tolerated(0.23) benign(0.008) TCGA-36-2534-01 14 74206317 74206317 G T ELMSAN1 Nonsense_Mutation p.S132* 0.31 TCGA-36-2534-01 14 77809609 77809609 G C TMED8 Silent p.T224T 0.39 TCGA-36-2534-01 14 93408232 93408232 C T ITPK1 Missense_Mutation p.E307K 0.81 deleterious(0.02) benign(0.298) TCGA-36-2534-01 15 23049261 23049261 G C NIPA1 Silent p.T186T 0.06 TCGA-36-2534-01 15 31776686 31776686 T - OTUD7A Frame_Shift_Del p.N531Tfs*88 0.64 TCGA-36-2534-01 15 58837994 58837994 T A LIPC Missense_Mutation p.S210T 0.90 deleterious(0) probably_damaging(0.986) TCGA-36-2534-01 15 75094337 75094337 G C CSK Splice_Site p.X362_splice 0.06 TCGA-36-2534-01 15 76523706 76523706 T C ETFA Missense_Mutation p.I284V 0.86 deleterious(0.02) benign(0.207) TCGA-36-2534-01 15 90216524 90216524 T C PLIN1 Missense_Mutation p.N56S 0.05 tolerated(0.15) benign(0.057) TCGA-36-2534-01 16 20803396 20803396 A G ACSM3 Missense_Mutation p.K467E 0.28 tolerated(1) benign(0.001) TCGA-36-2534-01 16 2111946 2111946 C G TSC2 Missense_Mutation p.N398K 0.06 deleterious(0.01) benign(0.112) TCGA-36-2534-01 16 23499997 23499997 T A GGA2 Missense_Mutation p.D170V 0.29 deleterious(0.03) benign(0.317) TCGA-36-2534-01 16 24372921 24372921 T A CACNG3 Missense_Mutation p.Y229N 0.32 tolerated(0.24) benign(0.046) TCGA-36-2534-01 16 24950756 24950756 G T ARHGAP17 Missense_Mutation p.S551R 0.25 tolerated(0.12) benign(0.131) TCGA-36-2534-01 16 30990567 30990567 C G SETD1A Missense_Mutation p.P1154A 0.51 unknown(0) TCGA-36-2534-01 16 48221239 48221239 T C ABCC11 Missense_Mutation p.I936V 0.06 tolerated(0.3) benign(0.006) TCGA-36-2534-01 16 66839822 66839822 G C NAE1 Missense_Mutation p.H480D 0.87 deleterious(0) benign(0.144) TCGA-36-2534-01 16 69725709 69725709 G A NFAT5 Missense_Mutation p.G661R 0.85 probably_damaging(0.991) TCGA-36-2534-01 16 88697595 88697595 C G ZC3H18 Missense_Mutation p.T917S 0.79 tolerated_low_confidence(0.14) benign(0.259) TCGA-36-2534-01 16 9186006 9186006 C G C16orf72 Missense_Mutation p.D35E 0.40 tolerated(1) benign(0.001) TCGA-36-2534-01 17 10416193 10416193 C A MYH1 Missense_Mutation p.D299Y 0.86 deleterious(0) possibly_damaging(0.732) TCGA-36-2534-01 17 27849422 27849422 T C TAOK1 Missense_Mutation p.I678T 0.84 tolerated(0.18) benign(0.005) TCGA-36-2534-01 17 29670026 29670026 G T NF1 Splice_Site p.X2355_splice 0.20 TCGA-36-2534-01 17 33768204 33768204 G C SLFN13 Missense_Mutation p.L702V 0.76 deleterious(0) probably_damaging(1) TCGA-36-2534-01 17 3662784 3662784 G T ITGAE Missense_Mutation p.Q260K 0.77 tolerated(0.42) possibly_damaging(0.575) TCGA-36-2534-01 17 38859865 38859883 GAAGCTGCTTCCACCAGCA - KRT24 Frame_Shift_Del p.G23Vfs*24 0.70 TCGA-36-2534-01 17 41203135 41203135 C A BRCA1 Splice_Site p.X1781_splice 0.91 TCGA-36-2534-01 17 4645731 4645731 A T ZMYND15 Silent p.A363A 0.17 TCGA-36-2534-01 17 46863617 46863617 G A TTLL6 Missense_Mutation p.S557L 0.91 deleterious(0.02) possibly_damaging(0.63) TCGA-36-2534-01 17 7576855 7576855 G A TP53 Nonsense_Mutation p.Q331* 0.82 TCGA-36-2534-01 17 7951805 7951805 C T ALOX15B Silent p.I651I 0.79 TCGA-36-2534-01 19 11833723 11833723 A G ZNF823 Missense_Mutation p.L209S 0.44 tolerated(0.8) benign(0.266) TCGA-36-2534-01 19 1278880 1278880 G C C19orf24 3'UTR 0.83 TCGA-36-2534-01 19 14877054 14877054 G A EMR2 Silent p.V209V 0.07 TCGA-36-2534-01 19 16060236 16060236 G T OR10H4 Missense_Mutation p.R140L 0.40 tolerated(0.06) benign(0.073) TCGA-36-2534-01 19 17664454 17664454 C A FAM129C 3'UTR 0.13 TCGA-36-2534-01 19 18241441 18241441 C G MAST3 Missense_Mutation p.P425R 0.06 deleterious(0) probably_damaging(0.999) TCGA-36-2534-01 19 19371670 19371670 T A HAPLN4 Missense_Mutation p.T146S 0.50 tolerated(0.08) probably_damaging(0.998) TCGA-36-2534-01 19 35828676 35828676 T C CD22 Missense_Mutation p.I246T 0.04 deleterious(0.01) probably_damaging(0.944) TCGA-36-2534-01 19 40354111 40354111 C A FCGBP 3'UTR 0.77 TCGA-36-2534-01 19 42585374 42585374 G A ZNF574 Silent p.V872V 0.06 TCGA-36-2534-01 19 47912361 47912361 G C MEIS3 Missense_Mutation p.L285V 0.11 deleterious(0) probably_damaging(0.969) TCGA-36-2534-01 19 57669774 57669774 A G DUXA Silent p.F120F 0.10 TCGA-36-2534-01 19 58790962 58790962 C A ZNF8 Intron 0.23 TCGA-36-2534-01 19 6380459 6380459 G C GTF2F1 Missense_Mutation p.L463V 0.05 deleterious(0) probably_damaging(0.996) TCGA-36-2534-01 19 830900 830900 G C AZU1 Missense_Mutation p.V185L 0.81 tolerated(0.09) benign(0.014) TCGA-36-2534-01 19 9204363 9204363 T C OR1M1 Missense_Mutation p.L148P 0.51 tolerated(0.31) benign(0) TCGA-36-2534-01 1 104112301 104112301 G T AMY2B Intron 0.19 TCGA-36-2534-01 1 104112305 104112305 G C AMY2B Intron 0.42 TCGA-36-2534-01 1 114357513 114357513 A T PTPN22 3'UTR 0.47 TCGA-36-2534-01 1 117122026 117122026 C T IGSF3 Missense_Mutation p.V1128I 0.38 tolerated(0.22) possibly_damaging(0.883) TCGA-36-2534-01 1 120464419 120464419 G C NOTCH2 Missense_Mutation p.Q1743E 0.41 tolerated(0.28) benign(0.2) TCGA-36-2534-01 1 169439231 169439231 C A SLC19A2 Missense_Mutation p.G334V 0.45 deleterious(0) probably_damaging(1) TCGA-36-2534-01 1 17263285 17263285 G T CROCC Missense_Mutation p.Q370H 0.83 possibly_damaging(0.73) TCGA-36-2534-01 1 182026653 182026653 G T ZNF648 Missense_Mutation p.P165T 0.40 tolerated(0.63) benign(0) TCGA-36-2534-01 1 183617796 183617796 C T APOBEC4 Missense_Mutation p.A41T 0.33 deleterious(0) probably_damaging(0.999) TCGA-36-2534-01 1 185269234 185269234 G A IVNS1ABP Silent p.Y466Y 0.51 TCGA-36-2534-01 1 201009170 201009170 G A CACNA1S Missense_Mutation p.A1804V 0.08 tolerated_low_confidence(0.1) benign(0.002) TCGA-36-2534-01 1 201252994 201252994 A G PKP1 Missense_Mutation p.K55R 0.05 tolerated(0.33) benign(0.261) TCGA-36-2534-01 1 227618218 227618218 G T CTD-2090I13.1 RNA 0.25 TCGA-36-2534-01 1 247655292 247655292 C G OR2W5 RNA 0.31 TCGA-36-2534-01 1 31187155 31187155 G T MATN1 Nonsense_Mutation p.C460* 0.63 TCGA-36-2534-01 20 30419940 30419940 G A MYLK2 Splice_Site p.X570_splice 0.33 TCGA-36-2534-01 20 30753155 30753155 G C TM9SF4 Missense_Mutation p.V613L 0.29 tolerated(0.17) benign(0.378) TCGA-36-2534-01 20 47254268 47254268 C A PREX1 Silent p.L1309L 0.07 TCGA-36-2534-01 20 54579162 54579162 C G CBLN4 Silent p.G22G 0.06 TCGA-36-2534-01 21 43221550 43221550 C A PRDM15 Silent p.G1458G 0.43 TCGA-36-2534-01 21 45789004 45789004 G C TRPM2 Intron 0.39 TCGA-36-2534-01 22 19166129 19166130 - A SLC25A1 Frame_Shift_Ins p.A20Cfs*69 0.38 TCGA-36-2534-01 22 19166130 19166130 C T SLC25A1 Silent p.K19K 0.43 TCGA-36-2534-01 22 37499388 37499388 G A TMPRSS6 Missense_Mutation p.P33S 0.42 deleterious(0.01) probably_damaging(0.996) TCGA-36-2534-01 22 41832754 41832754 C T TOB2 Missense_Mutation p.S199N 0.15 tolerated(0.78) benign(0) TCGA-36-2534-01 22 42609793 42609793 G C TCF20 Missense_Mutation p.P507A 0.05 benign(0.001) TCGA-36-2534-01 2 143986163 143986163 A G ARHGAP15 Missense_Mutation p.T104A 0.68 tolerated(0.64) possibly_damaging(0.472) TCGA-36-2534-01 2 163163342 163163342 C G IFIH1 Missense_Mutation p.D216H 0.29 deleterious(0.02) benign(0.39) TCGA-36-2534-01 2 169940017 169940017 T G DHRS9 Missense_Mutation p.S164R 0.05 deleterious(0) probably_damaging(1) TCGA-36-2534-01 2 20138094 20138094 T A WDR35 Silent p.A676A 0.42 TCGA-36-2534-01 2 21233200 21233200 T C APOB Silent p.Q2180Q 0.39 TCGA-36-2534-01 2 240954195 240954195 G A NDUFA10 Silent p.P210P 0.43 TCGA-36-2534-01 2 24299240 24299240 T C SF3B14 5'UTR 0.47 TCGA-36-2534-01 2 27587370 27587370 T G EIF2B4 Missense_Mutation p.D510A 0.44 deleterious(0) probably_damaging(1) TCGA-36-2534-01 2 44559784 44559784 C A PREPL Missense_Mutation p.W389C 0.07 deleterious(0) possibly_damaging(0.747) TCGA-36-2534-01 2 48808115 48808115 G A STON1-GTF2A1L Missense_Mutation p.A115T 0.39 tolerated(0.59) benign(0) TCGA-36-2534-01 2 73456033 73456033 C G PRADC1 Silent p.V112V 0.52 TCGA-36-2534-01 2 88423936 88423936 T A FABP1 Intron 0.47 TCGA-36-2534-01 3 100053569 100053569 C A NIT2 5'UTR 0.66 TCGA-36-2534-01 3 112643345 112643345 C A CD200R1 Missense_Mutation p.V306F 0.12 tolerated(0.1) benign(0.002) TCGA-36-2534-01 3 1339577 1339577 G A CNTN6 Silent p.V221V 0.75 TCGA-36-2534-01 3 138739360 138739360 C T PRR23B Silent p.P48P 0.36 TCGA-36-2534-01 3 160968761 160968761 T C NMD3 3'UTR 0.23 TCGA-36-2534-01 4 187086508 187086508 G A FAM149A Missense_Mutation p.V352M 0.44 tolerated(0.36) benign(0.007) TCGA-36-2534-01 4 39448094 39448094 A C KLB Missense_Mutation p.K583T 0.41 deleterious(0.01) possibly_damaging(0.877) TCGA-36-2534-01 4 527631 527631 G A PIGG Missense_Mutation p.V866M 0.76 tolerated(0.07) possibly_damaging(0.888) TCGA-36-2534-01 4 69796893 69796893 A T UGT2A3 Missense_Mutation p.I355K 0.06 deleterious(0) probably_damaging(0.974) TCGA-36-2534-01 4 96762459 96762459 C T PDHA2 Silent p.S386S 0.79 TCGA-36-2534-01 5 134147462 134147462 C G DDX46 Missense_Mutation p.A788G 0.12 tolerated(0.27) benign(0.437) TCGA-36-2534-01 5 140208319 140208319 A G PCDHA6 Missense_Mutation p.T215A 0.05 tolerated_low_confidence(0.06) benign(0.214) TCGA-36-2534-01 5 140589848 140589848 G A PCDHB12 Missense_Mutation p.A457T 0.06 tolerated_low_confidence(1) benign(0.001) TCGA-36-2534-01 5 40841613 40841613 G C CARD6 Missense_Mutation p.E43D 0.42 deleterious(0) probably_damaging(0.982) TCGA-36-2534-01 5 45267238 45267238 A C HCN1 Missense_Mutation p.M579R 0.08 deleterious(0) possibly_damaging(0.902) TCGA-36-2534-01 5 7826926 7826926 C T ADCY2 Missense_Mutation p.T1073M 0.42 deleterious(0) probably_damaging(1) TCGA-36-2534-01 5 850781 850781 G T ZDHHC11 5'UTR 0.59 TCGA-36-2534-01 6 10995339 10995339 G A ELOVL2 Missense_Mutation p.R136W 0.38 deleterious(0) probably_damaging(1) TCGA-36-2534-01 6 16145472 16145472 G T MYLIP Missense_Mutation p.C391F 0.42 tolerated(0.05) possibly_damaging(0.588) TCGA-36-2534-01 6 19838210 19838210 G A ID4 Silent p.L75L 0.34 TCGA-36-2534-01 6 27861369 27861369 C G HIST1H2BO Nonsense_Mutation p.Y43* 0.43 TCGA-36-2534-01 6 30638975 30638975 C A DHX16 Missense_Mutation p.R95L 0.86 tolerated(0.13) probably_damaging(0.931) TCGA-36-2534-01 6 33281917 33281917 G A TAPBP 5'UTR 0.13 TCGA-36-2534-01 6 41877141 41877141 T G MED20 Missense_Mutation p.K97Q 0.42 deleterious(0.01) possibly_damaging(0.713) TCGA-36-2534-01 6 46133125 46133125 C A ENPP5 Silent p.L335L 0.50 TCGA-36-2534-01 7 100411573 100411573 C G EPHB4 Silent p.L553L 0.40 TCGA-36-2534-01 7 100685766 100685766 G A MUC17 Missense_Mutation p.S3690N 0.44 benign(0.213) TCGA-36-2534-01 7 114174756 114174756 C T FOXP2 Silent p.L85L 0.66 TCGA-36-2534-01 7 117149180 117149180 T A CFTR Missense_Mutation p.I86N 0.07 deleterious(0) possibly_damaging(0.884) TCGA-36-2534-01 7 123509246 123509246 G A HYAL4 Missense_Mutation p.G307R 0.27 tolerated(0.09) probably_damaging(0.968) TCGA-36-2534-01 7 127231348 127231348 C T ARF5 Missense_Mutation p.R180C 0.28 deleterious_low_confidence(0) possibly_damaging(0.839) TCGA-36-2534-01 7 137269994 137269994 G A DGKI Silent p.P508P 0.31 TCGA-36-2534-01 7 27238031 27238031 G T HOXA13 Missense_Mutation p.S318Y 0.45 tolerated(0.11) probably_damaging(0.931) TCGA-36-2534-01 7 33020143 33020143 G A FKBP9 Missense_Mutation p.D291N 0.05 tolerated(0.13) probably_damaging(0.984) TCGA-36-2534-01 7 39247106 39247130 GCCAGCAAGGACTGGTTCTCACACT - POU6F2 Frame_Shift_Del p.G136Rfs*19 0.69 TCGA-36-2534-01 7 73771734 73771734 A T CLIP2 Missense_Mutation p.E381V 0.27 deleterious(0) probably_damaging(0.982) TCGA-36-2534-01 7 97617752 97617752 C A OCM2 Missense_Mutation p.G57V 0.40 deleterious(0) probably_damaging(1) TCGA-36-2534-01 7 99564733 99564733 A C AZGP1 Missense_Mutation p.S264A 0.42 tolerated(0.44) benign(0.005) TCGA-36-2534-01 8 119391936 119391936 C T SAMD12 Missense_Mutation p.R109Q 0.39 deleterious(0.02) probably_damaging(0.992) TCGA-36-2534-01 8 133764044 133764044 C G TMEM71 Missense_Mutation p.E101Q 0.20 deleterious(0) probably_damaging(1) TCGA-36-2534-01 8 141436737 141436737 G A TRAPPC9 Missense_Mutation p.A386V 0.17 deleterious(0.02) probably_damaging(0.971) TCGA-36-2534-01 8 145689935 145689935 C - CYHR1 Frame_Shift_Del p.A52Pfs*4 0.72 TCGA-36-2534-01 8 145773414 145773414 C T ARHGAP39 Silent p.K352K 0.41 TCGA-36-2534-01 8 146033660 146033660 G C ZNF517 Silent p.R453R 0.13 TCGA-36-2534-01 8 25261089 25261089 G T DOCK5 Nonsense_Mutation p.E1648* 0.76 TCGA-36-2534-01 8 37822813 37822813 G A ADRB3 Missense_Mutation p.A392V 0.71 tolerated(0.19) benign(0.157) TCGA-36-2534-01 8 42026496 42026496 C G AP3M2 Missense_Mutation p.L392V 0.12 tolerated(0.07) possibly_damaging(0.665) TCGA-36-2534-01 8 59059507 59059507 G A FAM110B Missense_Mutation p.E240K 0.46 tolerated(0.9) benign(0.009) TCGA-36-2534-01 8 72951154 72951154 G C TRPA1 Missense_Mutation p.N747K 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-36-2534-01 9 101470794 101470794 C G GABBR2 Missense_Mutation p.G76R 0.35 deleterious(0.02) probably_damaging(0.997) TCGA-36-2534-01 9 115456490 115456490 C T INIP Missense_Mutation p.A17T 0.49 deleterious(0.01) benign(0.089) TCGA-36-2534-01 9 116930928 116930928 C A COL27A1 Missense_Mutation p.P365T 0.41 unknown(0) TCGA-36-2534-01 9 133760930 133760930 G C ABL1 Missense_Mutation p.E1104Q 0.47 tolerated_low_confidence(0.05) probably_damaging(0.996) TCGA-36-2534-01 9 136289530 136289530 G A ADAMTS13 Missense_Mutation p.V88M 0.09 deleterious(0) probably_damaging(0.999) TCGA-36-2534-01 9 27284732 27284732 C T EQTN Missense_Mutation p.V292I 0.47 tolerated_low_confidence(1) benign(0.001) TCGA-36-2534-01 X 100169627 100169627 G A XKRX Silent p.G350G 0.45 TCGA-36-2534-01 X 108868276 108868276 C A KCNE1L 5'UTR 0.23 TCGA-36-2534-01 X 118143138 118143138 T A LONRF3 Missense_Mutation p.I527K 0.44 deleterious(0) probably_damaging(0.998) TCGA-36-2534-01 X 34962025 34962025 C T FAM47B Silent p.D359D 0.46 TCGA-36-2534-01 X 47497528 47497528 C A ELK1 Silent p.V236V 0.42 TCGA-36-2534-01 X 64887661 64887661 C T MSN 5'UTR 0.44 TCGA-36-2534-01 X 69262115 69262115 G A AWAT2 Missense_Mutation p.P257S 0.05 deleterious(0.02) probably_damaging(0.997) TCGA-36-2537-01 10 115348774 115348774 T A NRAP Missense_Mutation p.E1718V 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-36-2537-01 11 119044495 119044495 G T NLRX1 Missense_Mutation p.M179I 0.36 tolerated(0.42) probably_damaging(0.989) TCGA-36-2537-01 11 119044496 119044496 G T NLRX1 Missense_Mutation p.V180F 0.36 deleterious(0) probably_damaging(0.998) TCGA-36-2537-01 11 57947150 57947150 C T OR9Q1 Silent p.V78V 0.40 TCGA-36-2537-01 11 59997512 59997512 C A MS4A4E Missense_Mutation p.G6V 0.38 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-36-2537-01 11 6662540 6662540 C T DCHS1 Missense_Mutation p.R102H 0.68 deleterious(0.03) benign(0.381) TCGA-36-2537-01 12 70004520 70004534 CATCTTGTCCAGCGG - LRRC10 In_Frame_Del p.P29_M33del 0.37 TCGA-36-2537-01 15 41813157 41813157 A C RPAP1 Missense_Mutation p.L1076R 0.05 tolerated(0.28) benign(0.026) TCGA-36-2537-01 15 42681172 42681172 G A CAPN3 Missense_Mutation p.A227T 0.30 deleterious(0) possibly_damaging(0.908) TCGA-36-2537-01 15 56130801 56130801 T C NEDD4 Missense_Mutation p.D1025G 0.34 deleterious(0) probably_damaging(0.993) TCGA-36-2537-01 16 24817560 24817560 C T TNRC6A Nonsense_Mutation p.Q1429* 0.34 TCGA-36-2537-01 16 57601422 57601422 C G GPR114 Missense_Mutation p.P247R 0.35 deleterious(0) probably_damaging(0.988) TCGA-36-2537-01 16 88722100 88722100 G A MVD Silent p.G214G 0.27 TCGA-36-2537-01 17 17712753 17712777 GGTAGGGGACCACAGTGTTTTGTAG - RAI1 Splice_Site p.X1903_splice 0.40 TCGA-36-2537-01 17 21319402 21319402 G T KCNJ12 Missense_Mutation p.D250Y 0.20 deleterious(0) probably_damaging(1) TCGA-36-2537-01 17 3844790 3844790 G C ATP2A3 Missense_Mutation p.D568E 0.04 tolerated(0.08) probably_damaging(0.998) TCGA-36-2537-01 17 39280111 39280111 G A KRTAP4-12 Silent p.P88P 0.46 TCGA-36-2537-01 17 42930905 42930905 C A EFTUD2 Missense_Mutation p.V816F 0.55 deleterious(0) possibly_damaging(0.766) TCGA-36-2537-01 17 7578517 7578517 G A TP53 Missense_Mutation p.A138V 0.56 deleterious(0.03) possibly_damaging(0.644) TCGA-36-2537-01 19 14674819 14674819 C T TECR Missense_Mutation p.P98L 0.31 deleterious(0) possibly_damaging(0.839) TCGA-36-2537-01 19 35757275 35757275 C T LSR Silent p.G312G 0.39 TCGA-36-2537-01 19 42222192 42222192 G T CEACAM5 Missense_Mutation p.E461D 0.36 tolerated(0.33) benign(0.148) TCGA-36-2537-01 19 49558616 49558638 ACCTGGAACATCTCCATCCTTGG - CGB7 Splice_Site 0.12 TCGA-36-2537-01 19 57705353 57705353 G C ZNF264 Silent p.G48G 0.51 TCGA-36-2537-01 1 78001623 78001623 T C AK5 Missense_Mutation p.V507A 0.35 tolerated(0.66) benign(0.001) TCGA-36-2537-01 1 94946050 94946050 G A ABCD3 Missense_Mutation p.V239I 0.24 tolerated(0.72) benign(0.008) TCGA-36-2537-01 20 25456923 25456923 C T NINL Missense_Mutation p.E1002K 0.29 tolerated(0.1) benign(0.032) TCGA-36-2537-01 20 44451999 44451999 C A TNNC2 Missense_Mutation p.E157D 0.35 tolerated(0.13) benign(0.267) TCGA-36-2537-01 20 47614986 47614986 C T ARFGEF2 Missense_Mutation p.R1126W 0.06 deleterious(0) probably_damaging(1) TCGA-36-2537-01 20 9376218 9376218 C T PLCB4 Missense_Mutation p.S488F 0.35 deleterious(0.05) benign(0.081) TCGA-36-2537-01 21 45157298 45157298 G T PDXK Intron 0.42 TCGA-36-2537-01 21 47549213 47549213 A T COL6A2 Intron 0.29 TCGA-36-2537-01 22 38877312 38877312 T A KDELR3 Silent p.T149T 0.35 TCGA-36-2537-01 2 135745642 135745642 G A MAP3K19 Missense_Mutation p.A267V 0.44 tolerated(0.33) benign(0.021) TCGA-36-2537-01 2 234357890 234357913 TCCACCGGAGACCGCTTGGTGGCA - DGKD In_Frame_Del p.T587_S594del 0.72 TCGA-36-2537-01 3 113128097 113128097 T C WDR52 Missense_Mutation p.N249S 0.28 tolerated(1) benign(0.001) TCGA-36-2537-01 3 130398309 130398309 T G PIK3R4 Missense_Mutation p.K1309N 0.30 tolerated(0.23) benign(0.147) TCGA-36-2537-01 3 143212562 143212562 G A SLC9A9 Silent p.S416S 0.34 TCGA-36-2537-01 3 27216277 27216277 G A NEK10 Silent p.A851A 0.32 TCGA-36-2537-01 3 9949955 9949955 G T IL17RE Silent p.L233L 0.31 TCGA-36-2537-01 4 111482725 111482725 T A ENPEP 3'UTR 0.48 TCGA-36-2537-01 4 122681608 122681608 G A TMEM155 Silent p.S78S 0.34 TCGA-36-2537-01 4 124235272 124235272 C A SPATA5 3'UTR 0.26 TCGA-36-2537-01 4 188924559 188924559 A T ZFP42 Missense_Mutation p.R200W 0.50 deleterious(0) possibly_damaging(0.777) TCGA-36-2537-01 4 678391 678391 G C MFSD7 Intron 0.33 TCGA-36-2537-01 5 161302625 161302625 C G GABRA1 Missense_Mutation p.A179G 0.48 deleterious(0) benign(0.067) TCGA-36-2537-01 6 109308670 109308670 C A SESN1 3'UTR 0.36 TCGA-36-2537-01 6 31541137 31541137 C A LTA Missense_Mutation p.S95R 0.36 tolerated(0.38) benign(0.01) TCGA-36-2537-01 6 33238020 33238021 TC A VPS52 Frame_Shift_Del p.E44Cfs*26 0.33 TCGA-36-2537-01 6 43008015 43008015 C T CUL7 Silent p.V1475V 0.35 TCGA-36-2537-01 7 110303641 110303641 C G IMMP2L 3'UTR 0.34 TCGA-36-2537-01 7 26223322 26223322 G C NFE2L3 Missense_Mutation p.R251T 0.27 tolerated(0.24) benign(0.008) TCGA-36-2537-01 7 73107745 73107745 G C WBSCR22 Splice_Site p.X199_splice 0.04 TCGA-36-2537-01 7 75044922 75044922 C G POM121C 3'Flank 0.21 TCGA-36-2537-01 7 75686807 75686807 G C MDH2 Missense_Mutation p.K105N 0.22 deleterious(0) probably_damaging(0.945) TCGA-36-2537-01 7 93555456 93555456 G A GNG11 Silent p.E50E 0.36 TCGA-36-2537-01 8 12957274 12957274 C T DLC1 Missense_Mutation p.D858N 0.59 tolerated(0.19) benign(0.149) TCGA-36-2537-01 8 133144484 133144484 G T KCNQ3 Silent p.S609S 0.19 TCGA-36-2537-01 8 142229919 142229919 A G SLC45A4 Missense_Mutation p.L96P 0.18 deleterious(0) possibly_damaging(0.642) TCGA-36-2537-01 9 35377622 35377622 G A UNC13B Silent p.Q582Q 0.55 TCGA-36-2537-01 X 100871176 100871176 C G ARMCX6 Silent p.A145A 0.57 TCGA-36-2538-01 10 20534434 20534434 G A PLXDC2 Silent p.E491E 0.51 TCGA-36-2538-01 10 26558022 26558052 AAATCTATATTTCTTTTTCCTTCCAGAGGGA - GAD2 Splice_Site p.X307_splice 0.40 TCGA-36-2538-01 10 79737337 79737337 C G POLR3A Missense_Mutation p.G1358R 0.24 deleterious(0) probably_damaging(0.998) TCGA-36-2538-01 11 60785470 60785470 C A CD6 Missense_Mutation p.Q608K 0.52 deleterious(0.04) benign(0.215) TCGA-36-2538-01 11 77775072 77775072 G A THRSP Missense_Mutation p.A49T 0.38 tolerated(0.37) benign(0.092) TCGA-36-2538-01 11 77884982 77884990 TCTTGAGGT CCTCCAGGG KCTD21 Missense_Mutation p.NLKR204TLEG 0.08 TCGA-36-2538-01 12 10958741 10958741 C T TAS2R8 Missense_Mutation p.G280D 0.39 deleterious(0.01) possibly_damaging(0.772) TCGA-36-2538-01 12 6979678 6979678 T C TPI1 3'UTR 0.42 TCGA-36-2538-01 13 48881462 48881462 C T RB1 Nonsense_Mutation p.Q62* 0.69 TCGA-36-2538-01 15 66797142 66797142 G A RPL4 5'UTR 0.29 TCGA-36-2538-01 16 3077694 3077721 GAGTGTTTTTCATTTTCTTTTTTTTTTT - THOC6 3'UTR 0.25 TCGA-36-2538-01 16 31422654 31422654 T C ITGAD Missense_Mutation p.V508A 0.33 tolerated(0.12) benign(0.005) TCGA-36-2538-01 16 57787122 57787122 G A KATNB1 Missense_Mutation p.S330N 0.33 tolerated(0.32) benign(0.03) TCGA-36-2538-01 16 67007053 67007053 C G CES3 3'UTR 0.26 TCGA-36-2538-01 16 84213822 84213832 CAGGGGCTGCA - TAF1C Frame_Shift_Del p.V502Afs*47 0.26 TCGA-36-2538-01 16 89351486 89351486 A T ANKRD11 Missense_Mutation p.S488R 0.26 probably_damaging(0.944) TCGA-36-2538-01 17 20149327 20149327 C T SPECC1 Missense_Mutation p.P814S 0.55 tolerated(1) benign(0.002) TCGA-36-2538-01 17 7578448 7578448 G T TP53 Missense_Mutation p.A161D 0.69 deleterious(0) probably_damaging(1) TCGA-36-2538-01 17 79257259 79257259 C G SLC38A10 Missense_Mutation p.V103L 0.27 deleterious(0) probably_damaging(0.999) TCGA-36-2538-01 19 2254190 2254190 T A JSRP1 Silent p.G86G 0.60 TCGA-36-2538-01 19 4174680 4174680 C T SIRT6 Silent p.E334E 0.80 TCGA-36-2538-01 19 58452731 58452731 C T ZNF256 Nonsense_Mutation p.W482* 0.60 TCGA-36-2538-01 1 150975186 150975186 T G FAM63A Intron 0.27 TCGA-36-2538-01 1 153004916 153004916 C A SPRR1B Missense_Mutation p.P32Q 0.35 deleterious(0.02) probably_damaging(0.942) TCGA-36-2538-01 1 183539950 183539950 C T NCF2 Missense_Mutation p.D212N 0.35 deleterious(0) probably_damaging(0.999) TCGA-36-2538-01 1 196887346 196887346 G T CFHR4 Missense_Mutation p.C515F 0.38 deleterious(0) probably_damaging(0.921) TCGA-36-2538-01 1 202727577 202727577 C A KDM5B Missense_Mutation p.R380L 0.03 deleterious(0) possibly_damaging(0.888) TCGA-36-2538-01 1 20810087 20810087 A C CAMK2N1 3'UTR 0.60 TCGA-36-2538-01 1 235283208 235283208 C T TOMM20 Missense_Mutation p.D59N 0.35 tolerated(0.15) benign(0.181) TCGA-36-2538-01 20 36640945 36640945 A G TTI1 Missense_Mutation p.L425P 0.03 deleterious(0) probably_damaging(0.985) TCGA-36-2538-01 20 61039909 61039909 C T GATA5 Missense_Mutation p.A393T 0.38 deleterious(0) possibly_damaging(0.798) TCGA-36-2538-01 22 46327179 46327179 G A WNT7B Silent p.C123C 0.62 TCGA-36-2538-01 2 128018872 128018872 C T ERCC3 Missense_Mutation p.D666N 0.34 deleterious(0.01) probably_damaging(1) TCGA-36-2538-01 2 158399269 158399269 G C ACVR1C Nonsense_Mutation p.S350* 0.52 TCGA-36-2538-01 2 26698896 26698896 C T OTOF Silent p.A959A 0.26 TCGA-36-2538-01 2 73316417 73316417 C A RAB11FIP5 Missense_Mutation p.G153V 0.33 deleterious(0) probably_damaging(1) TCGA-36-2538-01 2 99256314 99256314 C A MGAT4A Missense_Mutation p.D427Y 0.19 deleterious(0) probably_damaging(0.945) TCGA-36-2538-01 3 113098286 113098286 A T WDR52 Missense_Mutation p.F722Y 0.27 tolerated(0.53) benign(0.094) TCGA-36-2538-01 3 113795662 113795662 C T QTRTD1 Nonsense_Mutation p.R219* 0.51 TCGA-36-2538-01 3 193854818 193854818 G A HES1 Silent p.L91L 0.25 TCGA-36-2538-01 3 44775970 44775970 G C ZNF501 Missense_Mutation p.K19N 0.40 deleterious_low_confidence(0) benign(0.025) TCGA-36-2538-01 3 98489735 98489735 G T ST3GAL6 Silent p.V34V 0.29 TCGA-36-2538-01 4 71891559 71891559 G A DCK Silent p.R192R 0.23 TCGA-36-2538-01 5 114552671 114552671 C G PGGT1B Splice_Site p.X282_splice 0.60 TCGA-36-2538-01 5 172590743 172590743 C T BNIP1 Missense_Mutation p.T212M 0.58 deleterious(0) possibly_damaging(0.742) TCGA-36-2538-01 5 94027831 94027831 G C ANKRD32 Silent p.V855V 0.06 TCGA-36-2538-01 5 9629771 9629771 A T TAS2R1 Missense_Mutation p.L125Q 0.23 deleterious(0) probably_damaging(0.971) TCGA-36-2538-01 6 112394072 112394072 C T TUBE1 Missense_Mutation p.S328N 0.45 deleterious(0.03) benign(0.045) TCGA-36-2538-01 6 31747405 31747405 G C VARS Missense_Mutation p.P1090A 0.35 tolerated(0.51) benign(0.004) TCGA-36-2538-01 6 33259701 33259701 G T RGL2 3'UTR 0.41 TCGA-36-2538-01 6 35088778 35088778 T C TCP11 Missense_Mutation p.N221S 0.17 deleterious(0.02) probably_damaging(0.913) TCGA-36-2538-01 6 38743608 38743608 A G DNAH8 Missense_Mutation p.I398V 0.20 benign(0.006) TCGA-36-2538-01 6 598111 598111 A C EXOC2 Missense_Mutation p.V328G 0.22 deleterious(0) probably_damaging(0.927) TCGA-36-2538-01 7 117364609 117364609 C A CTTNBP2 Missense_Mutation p.S1480I 0.35 tolerated(0.24) benign(0.002) TCGA-36-2538-01 7 83636709 83636709 A C SEMA3A Missense_Mutation p.V367G 0.33 tolerated(0.57) probably_damaging(0.973) TCGA-36-2538-01 7 87537420 87537420 A T DBF4 Missense_Mutation p.D656V 0.31 deleterious(0) benign(0.048) TCGA-36-2538-01 7 92761517 92761517 G A SAMD9L Silent p.H1256H 0.42 TCGA-36-2538-01 7 99054147 99054147 C G CPSF4 3'UTR 0.31 TCGA-36-2538-01 8 103572819 103572819 C G ODF1 Missense_Mutation p.R154G 0.39 deleterious(0.05) probably_damaging(0.982) TCGA-36-2538-01 8 140743260 140743260 G A TRAPPC9 3'UTR 0.38 TCGA-36-2538-01 X 153541113 153541113 G T TKTL1 Missense_Mutation p.V285F 0.66 tolerated(0.18) benign(0.014) TCGA-36-2538-01 X 40540085 40540085 A T MED14 Missense_Mutation p.S845R 0.50 tolerated(0.3) possibly_damaging(0.733) TCGA-36-2538-01 X 70323949 70323949 C A CXorf65 Missense_Mutation p.G147V 0.56 deleterious(0.01) probably_damaging(0.992) TCGA-36-2539-01 10 104679500 104679500 C T CNNM2 Silent p.T421T 0.45 TCGA-36-2539-01 10 82126680 82126680 G T DYDC2 Missense_Mutation p.M183I 0.19 tolerated(0.24) benign(0.008) TCGA-36-2539-01 11 116655120 116655120 C A ZNF259 Nonsense_Mutation p.E289* 0.25 TCGA-36-2539-01 11 117302344 117302344 G T DSCAML1 Silent p.R1820R 0.26 TCGA-36-2539-01 11 122756665 122756665 T G C11orf63 Missense_Mutation p.H36Q 0.16 tolerated(0.09) benign(0.016) TCGA-36-2539-01 11 124487278 124487278 A T PANX3 Missense_Mutation p.S145C 0.26 deleterious(0) probably_damaging(0.972) TCGA-36-2539-01 11 128839371 128839371 G A ARHGAP32 Nonsense_Mutation p.Q1899* 0.18 TCGA-36-2539-01 11 56431467 56431467 T - OR5AR1 Frame_Shift_Del p.F104Lfs*2 0.13 TCGA-36-2539-01 11 57235182 57235182 G T RTN4RL2 Silent p.V44V 0.24 TCGA-36-2539-01 11 61083826 61083826 T C DDB1 Silent p.E447E 0.24 TCGA-36-2539-01 11 65793220 65793220 G C CATSPER1 Missense_Mutation p.Q211E 0.30 tolerated(1) benign(0.003) TCGA-36-2539-01 11 67132642 67132642 C T CLCF1 Missense_Mutation p.A215T 0.09 tolerated_low_confidence(0.07) benign(0.01) TCGA-36-2539-01 11 7083733 7083733 G T NLRP14 Missense_Mutation p.G992W 0.40 deleterious(0) probably_damaging(0.984) TCGA-36-2539-01 11 75277853 75277853 C A SERPINH1 Missense_Mutation p.H153Q 0.10 deleterious(0.01) probably_damaging(0.967) TCGA-36-2539-01 11 94194158 94194158 C G MRE11A Missense_Mutation p.G424R 0.07 tolerated(0.52) possibly_damaging(0.553) TCGA-36-2539-01 12 123344702 123344702 G A HIP1R Missense_Mutation p.R835Q 0.32 tolerated(0.46) probably_damaging(0.98) TCGA-36-2539-01 12 3782626 3782626 C A EFCAB4B Missense_Mutation p.E219D 0.26 deleterious(0.01) possibly_damaging(0.848) TCGA-36-2539-01 12 6499461 6499461 A G LTBR Missense_Mutation p.R329G 0.06 deleterious(0.01) benign(0.158) TCGA-36-2539-01 12 9085861 9085861 A G PHC1 Missense_Mutation p.H603R 0.24 tolerated(0.1) unknown(0) TCGA-36-2539-01 14 105861040 105861040 C T PACS2 3'UTR 0.23 TCGA-36-2539-01 14 24026133 24026133 G A THTPA Missense_Mutation p.R56Q 0.24 tolerated(1) benign(0.003) TCGA-36-2539-01 14 65199547 65199547 G T PLEKHG3 Nonsense_Mutation p.E369* 0.23 TCGA-36-2539-01 14 72205868 72205868 A T SIPA1L1 Missense_Mutation p.D1802V 0.28 deleterious(0) probably_damaging(0.994) TCGA-36-2539-01 14 73569920 73569920 C G RBM25 Silent p.G296G 0.30 TCGA-36-2539-01 14 74763113 74763113 C T ABCD4 Silent p.R155R 0.04 TCGA-36-2539-01 14 96707461 96707461 A G BDKRB2 Missense_Mutation p.R266G 0.21 deleterious(0.02) possibly_damaging(0.688) TCGA-36-2539-01 15 72454682 72454682 C T GRAMD2 Silent p.A331A 0.04 TCGA-36-2539-01 15 81274487 81274487 G A MESDC2 Missense_Mutation p.H84Y 0.35 deleterious(0.05) benign(0.346) TCGA-36-2539-01 15 86312295 86312295 G A KLHL25 Silent p.A249A 0.07 TCGA-36-2539-01 16 67942865 67942865 G A PSKH1 Silent p.T71T 0.05 TCGA-36-2539-01 16 81320920 81320920 C G BCMO1 Silent p.L441L 0.18 TCGA-36-2539-01 16 89627311 89627311 G T RPL13 5'UTR 0.27 TCGA-36-2539-01 17 10424577 10424577 T C MYH2 3'UTR 0.36 TCGA-36-2539-01 17 21092083 21092083 C G DHRS7B Missense_Mutation p.Q227E 0.04 tolerated(0.27) benign(0.013) TCGA-36-2539-01 17 36552172 36552172 A T SOCS7 Missense_Mutation p.E566V 0.08 deleterious(0) possibly_damaging(0.706) TCGA-36-2539-01 17 56357338 56357338 T G MPO Missense_Mutation p.M96L 0.35 tolerated(0.72) benign(0.002) TCGA-36-2539-01 17 72860098 72860098 C T FDXR Missense_Mutation p.R408H 0.07 tolerated(0.58) benign(0.021) TCGA-36-2539-01 17 74396252 74396252 C A UBE2O Missense_Mutation p.Q377H 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.459) TCGA-36-2539-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.38 TCGA-36-2539-01 18 28918344 28918344 G C DSG1 Missense_Mutation p.L444F 0.06 tolerated(0.74) benign(0.046) TCGA-36-2539-01 18 43243869 43243869 A T SLC14A2 Nonsense_Mutation p.K491* 0.26 TCGA-36-2539-01 19 10663760 10663761 - A ATG4D 3'UTR 0.13 TCGA-36-2539-01 19 13008553 13008553 T - GCDH Frame_Shift_Del p.N373Kfs*28 0.23 TCGA-36-2539-01 19 40357690 40357690 C A FCGBP Missense_Mutation p.C5208F 0.36 probably_damaging(0.999) TCGA-36-2539-01 19 50208013 50208013 C T CPT1C Missense_Mutation p.P247L 0.28 deleterious(0) benign(0.169) TCGA-36-2539-01 19 5274315 5274315 G A PTPRS Silent p.G44G 0.11 TCGA-36-2539-01 1 153651993 153651993 C G NPR1 Missense_Mutation p.L137V 0.21 tolerated(0.91) benign(0.013) TCGA-36-2539-01 1 155895441 155895441 G C KIAA0907 Missense_Mutation p.P292R 0.31 deleterious(0) probably_damaging(1) TCGA-36-2539-01 1 200378734 200378734 C G ZNF281 Missense_Mutation p.G34R 0.24 deleterious_low_confidence(0.03) unknown(0) TCGA-36-2539-01 1 212860168 212860168 G A BATF3 Missense_Mutation p.R117W 0.12 deleterious(0) probably_damaging(0.999) TCGA-36-2539-01 1 227079449 227079449 G A PSEN2 Missense_Mutation p.D326N 0.27 tolerated(0.37) possibly_damaging(0.471) TCGA-36-2539-01 1 33117020 33117020 G A RBBP4 Intron 0.08 TCGA-36-2539-01 1 61848994 61848994 G A NFIA Silent p.T389T 0.06 TCGA-36-2539-01 20 49510368 49510368 C G ADNP Missense_Mutation p.V295L 0.28 tolerated(0.18) benign(0.208) TCGA-36-2539-01 21 32492754 32492754 T A TIAM1 Missense_Mutation p.S1570C 0.26 deleterious_low_confidence(0.03) benign(0.371) TCGA-36-2539-01 21 34974579 34974579 C A CRYZL1 Nonsense_Mutation p.E180* 0.20 TCGA-36-2539-01 21 43984817 43984817 G A SLC37A1 Splice_Site p.X379_splice 0.21 TCGA-36-2539-01 22 30090740 30090740 G C NF2 Splice_Site p.X580_splice 0.19 TCGA-36-2539-01 22 31608337 31608337 C G LIMK2 5'UTR 0.19 TCGA-36-2539-01 22 32100655 32100655 G A PRR14L Silent p.S1938S 0.07 TCGA-36-2539-01 22 50587959 50587978 TGAGCGTGGCTTTGCCAGTG - MOV10L1 Intron 0.22 TCGA-36-2539-01 2 160636685 160636685 C T LY75-CD302 Silent p.A1741A 0.29 TCGA-36-2539-01 2 197653978 197653978 C A GTF3C3 Missense_Mutation p.L281F 0.27 tolerated(0.08) possibly_damaging(0.796) TCGA-36-2539-01 2 197863638 197863638 G A ANKRD44 Silent p.G861G 0.06 TCGA-36-2539-01 2 204304868 204304868 C T RAPH1 Silent p.K1015K 0.26 TCGA-36-2539-01 2 204736161 204736161 G A CTLA4 Missense_Mutation p.G173E 0.21 deleterious(0.05) benign(0.19) TCGA-36-2539-01 2 212251599 212251599 T C ERBB4 Missense_Mutation p.M1154V 0.11 tolerated(0.59) benign(0.031) TCGA-36-2539-01 2 44079924 44079924 T C ABCG8 Missense_Mutation p.L294S 0.39 tolerated(0.5) benign(0.009) TCGA-36-2539-01 2 55473575 55473575 G A MTIF2 Missense_Mutation p.A335V 0.05 tolerated(0.27) benign(0.227) TCGA-36-2539-01 2 85777684 85777701 CGAAAGACATAGAGCTTT - GGCX In_Frame_Del p.K688_R693del 0.27 TCGA-36-2539-01 3 121980902 121980902 G C CASR Missense_Mutation p.R340S 0.24 tolerated(1) benign(0.002) TCGA-36-2539-01 3 186572017 186572017 G A ADIPOQ Missense_Mutation p.G87R 0.03 deleterious(0) probably_damaging(1) TCGA-36-2539-01 3 7620595 7620595 A T GRM7 Missense_Mutation p.I668F 0.03 tolerated(0.19) probably_damaging(0.935) TCGA-36-2539-01 4 114302795 114302795 G A ANK2 3'UTR 0.28 TCGA-36-2539-01 4 153258956 153258956 C G FBXW7 Missense_Mutation p.E287Q 0.38 deleterious(0) probably_damaging(0.99) TCGA-36-2539-01 4 40045197 40045197 G A RP11-333E13.4 RNA 0.31 TCGA-36-2539-01 4 68499144 68499145 - T UBA6 Frame_Shift_Ins p.L688Vfs*3 0.14 TCGA-36-2539-01 5 13788871 13788871 A C DNAH5 Missense_Mutation p.I2867M 0.40 benign(0.308) TCGA-36-2539-01 5 139193782 139193782 A T PSD2 Silent p.S283S 0.21 TCGA-36-2539-01 5 139906584 139906584 C G ANKHD1 Missense_Mutation p.P1671R 0.07 probably_damaging(0.975) TCGA-36-2539-01 5 140182411 140182411 G A PCDHA3 Silent p.P543P 0.04 TCGA-36-2539-01 5 140432711 140432711 C G PCDHB1 Silent p.V552V 0.24 TCGA-36-2539-01 5 140517412 140517412 G A PCDHB5 3'UTR 0.31 TCGA-36-2539-01 5 140604609 140604609 G A PCDHB14 Missense_Mutation p.G511D 0.06 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-36-2539-01 5 150887122 150887122 G T FAT2 Missense_Mutation p.P4037H 0.26 benign(0.04) TCGA-36-2539-01 5 169483749 169483749 G A DOCK2 Missense_Mutation p.V1453I 0.07 tolerated(0.18) benign(0) TCGA-36-2539-01 5 37157917 37157917 C A C5orf42 Splice_Site p.X2605_splice 0.43 TCGA-36-2539-01 6 110501769 110501769 C A CDC40 Missense_Mutation p.T41N 0.41 tolerated(0.48) benign(0.001) TCGA-36-2539-01 6 124125392 124125392 T C NKAIN2 Missense_Mutation p.M16T 0.05 deleterious(0) benign(0.015) TCGA-36-2539-01 6 27925342 27925342 G T OR2B6 Silent p.G108G 0.48 TCGA-36-2539-01 6 30919553 30919553 T A DPCR1 Silent p.P1104P 0.28 TCGA-36-2539-01 6 42796574 42796574 T C GLTSCR1L Missense_Mutation p.V168A 0.37 deleterious(0.01) probably_damaging(0.995) TCGA-36-2539-01 6 5260960 5260960 C A LYRM4 Missense_Mutation p.A3S 0.41 tolerated_low_confidence(0.06) possibly_damaging(0.846) TCGA-36-2539-01 7 151962138 151962138 A G KMT2C Missense_Mutation p.V390A 0.04 probably_damaging(0.999) TCGA-36-2539-01 7 26224974 26224974 T C NFE2L3 Silent p.D552D 0.30 TCGA-36-2539-01 7 27150323 27150323 T A HOXA3 5'UTR 0.23 TCGA-36-2539-01 7 2974212 2974212 C A CARD11 Missense_Mutation p.A465S 0.03 tolerated(0.67) benign(0) TCGA-36-2539-01 7 49815161 49815161 G T VWC2 Missense_Mutation p.G44C 0.16 tolerated_low_confidence(0.06) possibly_damaging(0.533) TCGA-36-2539-01 7 50611679 50611679 G A DDC Silent p.P35P 0.27 TCGA-36-2539-01 8 104384003 104384003 C G CTHRC1 Missense_Mutation p.A40G 0.15 tolerated_low_confidence(0.2) benign(0.033) TCGA-36-2539-01 8 132051626 132051626 G C ADCY8 Missense_Mutation p.I318M 0.16 tolerated(0.15) benign(0.076) TCGA-36-2539-01 8 143928122 143928122 G C GML 3'UTR 0.21 TCGA-36-2539-01 8 94934717 94934717 G C PDP1 Missense_Mutation p.D169H 0.23 deleterious(0) probably_damaging(0.999) TCGA-36-2539-01 9 131122832 131122832 A G SLC27A4 3'UTR 0.20 TCGA-36-2539-01 9 131870173 131870173 C T CRAT Missense_Mutation p.D71N 0.26 tolerated(0.05) benign(0.002) TCGA-36-2539-01 9 34648148 34648148 A G GALT Missense_Mutation p.N182D 0.26 deleterious(0) probably_damaging(1) TCGA-36-2539-01 9 37740307 37740307 C A FRMPD1 Missense_Mutation p.N594K 0.28 deleterious(0.01) probably_damaging(0.952) TCGA-36-2539-01 9 7174764 7174764 G C KDM4C 3'UTR 0.25 TCGA-36-2539-01 X 106466001 106466001 T C PIH1D3 Missense_Mutation p.V120A 0.17 deleterious(0) probably_damaging(0.998) TCGA-36-2539-01 X 118544163 118544163 G A SLC25A43 Silent p.P176P 0.33 TCGA-36-2539-01 X 132162152 132162152 T A USP26 Nonsense_Mutation p.K33* 0.25 TCGA-36-2539-01 X 5811016 5811016 G A NLGN4X Missense_Mutation p.R765C 0.08 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-36-2539-01 X 64949512 64949512 C T MSN Silent p.G135G 0.03 TCGA-36-2540-01 12 100806547 100806547 G A SLC17A8 Splice_Site p.X396_splice 0.33 TCGA-36-2540-01 17 56598247 56598247 C T SEPT4 Intron 0.34 TCGA-36-2540-01 18 5489039 5489039 G A EPB41L3 Silent p.F48F 0.57 TCGA-36-2540-01 19 8921997 8921997 T C ZNF558 Missense_Mutation p.Y390C 0.34 tolerated(0.17) possibly_damaging(0.707) TCGA-36-2540-01 7 102113192 102113192 G A LRWD1 Missense_Mutation p.V582I 0.31 tolerated(0.35) benign(0.007) TCGA-36-2540-01 7 123594015 123594015 A G SPAM1 Missense_Mutation p.I131V 0.31 deleterious(0.03) probably_damaging(0.951) TCGA-36-2540-01 8 124027738 124027738 G A DERL1 Silent p.G235G 0.37 TCGA-36-2540-01 X 12937755 12937755 C T TLR8 Missense_Mutation p.T199M 0.24 tolerated(0.06) benign(0.064) TCGA-36-2542-01 10 13629055 13629055 C T PRPF18 5'UTR 0.08 TCGA-36-2542-01 10 14974840 14974852 CTTGCACACGTAC - DCLRE1C Splice_Site p.X260_splice 0.35 TCGA-36-2542-01 10 72061135 72061135 T G LRRC20 Missense_Mutation p.E177A 0.10 deleterious_low_confidence(0.01) benign(0.015) TCGA-36-2542-01 10 7605294 7605294 G T ITIH5 Missense_Mutation p.Q861K 0.42 tolerated(1) benign(0.002) TCGA-36-2542-01 11 113295109 113295109 G A DRD2 Missense_Mutation p.P89S 0.36 deleterious(0) probably_damaging(0.985) TCGA-36-2542-01 11 119508924 119508924 G C RP11-196E1.3 Intron 0.04 TCGA-36-2542-01 11 12284041 12284041 C A MICAL2 Missense_Mutation p.P1117T 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-36-2542-01 11 132290133 132290133 A T OPCML Missense_Mutation p.L331H 0.34 tolerated(0.24) possibly_damaging(0.76) TCGA-36-2542-01 11 2188191 2188191 G T TH Missense_Mutation p.A287D 0.41 tolerated(0.1) benign(0.001) TCGA-36-2542-01 11 3838603 3838603 C A PGAP2 Missense_Mutation p.F62L 0.28 tolerated(0.9) benign(0) TCGA-36-2542-01 11 397268 397268 G A PKP3 Missense_Mutation p.S256N 0.41 tolerated(0.18) benign(0.201) TCGA-36-2542-01 11 65341130 65341130 G T FAM89B 3'UTR 0.21 TCGA-36-2542-01 12 18890386 18890386 T A PLCZ1 5'UTR 0.22 TCGA-36-2542-01 12 48359760 48359760 C A TMEM106C Missense_Mutation p.L131I 0.25 tolerated(0.71) benign(0.055) TCGA-36-2542-01 12 52200410 52200410 A G SCN8A Missense_Mutation p.I1714V 0.08 deleterious(0.02) probably_damaging(0.996) TCGA-36-2542-01 12 75895678 75895678 G T GLIPR1 3'UTR 0.44 TCGA-36-2542-01 12 8211663 8211663 G A C3AR1 Silent p.S373S 0.31 TCGA-36-2542-01 14 103180760 103180760 G A RCOR1 Missense_Mutation p.V287I 0.62 tolerated(0.32) benign(0.31) TCGA-36-2542-01 14 21109629 21109629 C T OR6S1 Silent p.L74L 0.39 TCGA-36-2542-01 14 50246941 50246941 G C KLHDC2 Missense_Mutation p.G262R 0.10 deleterious(0.02) possibly_damaging(0.559) TCGA-36-2542-01 14 59113731 59113731 C T DACT1 Missense_Mutation p.T797M 0.51 deleterious(0.01) possibly_damaging(0.901) TCGA-36-2542-01 14 70633718 70633718 A C SLC8A3 Missense_Mutation p.F474L 0.64 deleterious(0) probably_damaging(0.937) TCGA-36-2542-01 15 102294613 102294613 G T DNM1P47 RNA 0.14 TCGA-36-2542-01 15 44067566 44067566 C T ELL3 Missense_Mutation p.V195I 0.55 tolerated(0.11) benign(0) TCGA-36-2542-01 15 65447156 65447156 A T CLPX Silent p.V525V 0.09 TCGA-36-2542-01 16 20559445 20559457 AGAGTTTCTGGAA - ACSM2B Frame_Shift_Del p.L342Rfs*23 0.40 TCGA-36-2542-01 16 24922749 24922749 C G SLC5A11 Silent p.A641A 0.37 TCGA-36-2542-01 16 66836832 66836859 AGAATTTTACAGACTAAAGCACAACCCG - NAE1 3'UTR 0.66 TCGA-36-2542-01 16 8989591 8989591 C G USP7 Missense_Mutation p.E943Q 0.31 deleterious(0.04) benign(0.44) TCGA-36-2542-01 17 33510505 33510505 C T UNC45B Silent p.C813C 0.04 TCGA-36-2542-01 17 36891716 36891737 GCTGGGAGCCTTGTCGCTGACT - PCGF2 Frame_Shift_Del p.V259Lfs*53 0.72 TCGA-36-2542-01 17 41243733 41243745 TTACTGCAGTCAT - BRCA1 Frame_Shift_Del p.N1268Tfs*3 0.48 TCGA-36-2542-01 17 42988741 42988741 C T GFAP Silent p.R330R 0.12 TCGA-36-2542-01 17 60526037 60526037 C G METTL2A Missense_Mutation p.R362G 0.75 deleterious(0) probably_damaging(0.999) TCGA-36-2542-01 17 62500099 62500102 ACAG - DDX5 Splice_Site p.X147_splice 0.80 TCGA-36-2542-01 17 73774604 73774605 - A H3F3B 3'UTR 0.27 TCGA-36-2542-01 17 7577105 7577105 G C TP53 Missense_Mutation p.P278R 0.71 deleterious(0) probably_damaging(1) TCGA-36-2542-01 18 50912510 50912510 T A DCC Splice_Site p.X819_splice 0.50 TCGA-36-2542-01 19 13260652 13260652 A G STX10 Missense_Mutation p.L32P 0.35 deleterious(0.05) possibly_damaging(0.563) TCGA-36-2542-01 19 3119342 3119342 T G GNA11 Missense_Mutation p.F292V 0.34 deleterious(0) probably_damaging(0.993) TCGA-36-2542-01 19 36303778 36303778 C G PRODH2 Missense_Mutation p.G53A 0.11 deleterious_low_confidence(0.04) probably_damaging(0.91) TCGA-36-2542-01 19 37646781 37646781 C T CTC-454I21.3 Missense_Mutation p.R81H 0.12 tolerated(0.78) benign(0.002) TCGA-36-2542-01 19 47217202 47217202 G A PRKD2 Silent p.D99D 0.50 TCGA-36-2542-01 19 50040395 50040395 C T RCN3 Missense_Mutation p.T184I 0.48 deleterious(0) possibly_damaging(0.653) TCGA-36-2542-01 19 5684792 5684792 G C HSD11B1L Intron 0.40 TCGA-36-2542-01 19 5684793 5684793 C T HSD11B1L Intron 0.41 TCGA-36-2542-01 19 581411 581411 G A BSG Missense_Mutation p.G297S 0.36 deleterious(0) probably_damaging(0.99) TCGA-36-2542-01 1 192547373 192547373 G C RGS1 Missense_Mutation p.S101T 0.38 tolerated(0.55) benign(0.045) TCGA-36-2542-01 1 210329144 210329144 T G SYT14 Missense_Mutation p.S460A 0.35 deleterious(0.04) benign(0.008) TCGA-36-2542-01 1 218614630 218614630 C G TGFB2 Missense_Mutation p.L419V 0.35 tolerated(0.28) benign(0.234) TCGA-36-2542-01 1 224607272 224607272 T C WDR26 Silent p.E270E 0.10 TCGA-36-2542-01 1 2340118 2340118 G A PEX10 Nonsense_Mutation p.R125* 0.43 TCGA-36-2542-01 1 243419325 243419325 C A SDCCAG8 5'Flank 0.21 TCGA-36-2542-01 1 37961519 37961519 C A MEAF6 Missense_Mutation p.E188D 0.05 deleterious_low_confidence(0.04) benign(0.022) TCGA-36-2542-01 20 30753276 30753276 C G TM9SF4 3'UTR 0.33 TCGA-36-2542-01 20 37174911 37174916 CCTTCA - RALGAPB In_Frame_Del p.P916_S917del 0.13 TCGA-36-2542-01 20 50405670 50405670 A T SALL4 Missense_Mutation p.S824R 0.49 deleterious(0.04) possibly_damaging(0.582) TCGA-36-2542-01 20 62624829 62624829 A C PRPF6 Silent p.S143S 0.57 TCGA-36-2542-01 21 34018831 34018831 G A SYNJ1 Missense_Mutation p.T1079I 0.17 deleterious(0.04) benign(0.011) TCGA-36-2542-01 21 38072127 38072127 C A SIM2 Silent p.L27L 0.21 TCGA-36-2542-01 21 44839324 44839324 C G SIK1 Missense_Mutation p.R385P 0.14 tolerated(0.06) possibly_damaging(0.689) TCGA-36-2542-01 21 45712971 45712971 G T AIRE Silent p.L397L 0.35 TCGA-36-2542-01 22 41537079 41537079 A G EP300 Missense_Mutation p.K636E 0.15 possibly_damaging(0.472) TCGA-36-2542-01 22 43529171 43529171 C T MCAT Missense_Mutation p.G351S 0.31 deleterious(0) probably_damaging(1) TCGA-36-2542-01 22 51015865 51015865 C A CPT1B Missense_Mutation p.G57C 0.55 deleterious(0) possibly_damaging(0.76) TCGA-36-2542-01 2 112725808 112725808 G A MERTK Silent p.P313P 0.07 TCGA-36-2542-01 2 120640100 120640100 A T PTPN4 Missense_Mutation p.Q163L 0.40 tolerated(0.05) benign(0.001) TCGA-36-2542-01 2 152293851 152293851 G C RIF1 Missense_Mutation p.G490A 0.22 deleterious(0) possibly_damaging(0.858) TCGA-36-2542-01 2 206992629 206992629 C G NDUFS1 Missense_Mutation p.K606N 0.06 deleterious(0) probably_damaging(0.998) TCGA-36-2542-01 2 216292974 216292974 C T FN1 Missense_Mutation p.C258Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-36-2542-01 2 223917913 223917913 G T KCNE4 Missense_Mutation p.G122V 0.22 deleterious(0.05) possibly_damaging(0.826) TCGA-36-2542-01 2 37463246 37463246 A T NDUFAF7 Missense_Mutation p.Y75F 0.30 deleterious(0) probably_damaging(0.987) TCGA-36-2542-01 3 112358449 112358449 C G CCDC80 Missense_Mutation p.V102L 0.06 tolerated_low_confidence(0.5) possibly_damaging(0.571) TCGA-36-2542-01 3 113955434 113955434 C T ZNF80 Missense_Mutation p.C163Y 0.49 deleterious(0) probably_damaging(0.989) TCGA-36-2542-01 3 119379141 119379141 C A POPDC2 Missense_Mutation p.G44C 0.34 deleterious(0) probably_damaging(1) TCGA-36-2542-01 3 164741547 164741547 T A SI Missense_Mutation p.K970N 0.38 tolerated(0.31) benign(0.008) TCGA-36-2542-01 3 52729555 52729555 G C GLT8D1 Missense_Mutation p.L232V 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-36-2542-01 3 52858557 52858578 GGATCTTGATTAGGGCTTCCCG - ITIH4 Frame_Shift_Del p.R294Wfs*34 0.10 TCGA-36-2542-01 3 53154019 53154019 G A RFT1 Silent p.L193L 0.30 TCGA-36-2542-01 4 140587070 140587070 C A MGST2 5'UTR 0.31 TCGA-36-2542-01 4 40144436 40144436 T A N4BP2 Silent p.A1643A 0.12 TCGA-36-2542-01 5 141052463 141052463 G A ARAP3 Nonsense_Mutation p.Q375* 0.41 TCGA-36-2542-01 5 150846759 150846759 G C SLC36A1 Splice_Site p.X140_splice 0.33 TCGA-36-2542-01 5 169108799 169108799 C - DOCK2 Frame_Shift_Del p.P175Lfs*53 0.26 TCGA-36-2542-01 5 26881242 26881242 C A CDH9 3'UTR 0.04 TCGA-36-2542-01 5 6663040 6663040 C T SRD5A1 Missense_Mutation p.T225M 0.37 deleterious(0) probably_damaging(0.997) TCGA-36-2542-01 5 86679577 86679596 GGATGTTCAATATCATCTCA - RASA1 Frame_Shift_Del 0.35 TCGA-36-2542-01 6 129609120 129609120 G A LAMA2 Missense_Mutation p.C889Y 0.61 deleterious(0) probably_damaging(1) TCGA-36-2542-01 6 26031875 26031875 C T HIST1H3B 3'UTR 0.08 TCGA-36-2542-01 6 28543042 28543042 T A SCAND3 Silent p.R480R 0.45 TCGA-36-2542-01 6 31541349 31541349 C T LTA Missense_Mutation p.S166L 0.08 tolerated(0.06) probably_damaging(1) TCGA-36-2542-01 6 33281788 33281788 C T TAPBP Missense_Mutation p.A11T 0.34 tolerated(0.22) unknown(0) TCGA-36-2542-01 6 49427027 49427027 C A MUT Silent p.L51L 0.25 TCGA-36-2542-01 6 86282043 86282043 C G SNX14 Missense_Mutation p.C104S 0.25 deleterious(0) probably_damaging(0.999) TCGA-36-2542-01 6 88182667 88182667 G T SLC35A1 5'Flank 0.29 TCGA-36-2542-01 7 102944373 102944373 A T PMPCB Missense_Mutation p.E181V 0.11 deleterious(0) probably_damaging(1) TCGA-36-2542-01 7 135366378 135366378 A T SLC13A4 Missense_Mutation p.V605D 0.31 tolerated(0.06) possibly_damaging(0.598) TCGA-36-2542-01 7 139724414 139724414 C G PARP12 Silent p.S684S 0.40 TCGA-36-2542-01 7 151917707 151917707 T A KMT2C Nonsense_Mutation p.K1205* 0.13 TCGA-36-2542-01 7 40117693 40117693 G C CDK13 Missense_Mutation p.R957P 0.34 tolerated(0.05) probably_damaging(0.977) TCGA-36-2542-01 7 44715805 44715805 G T OGDH Intron 0.33 TCGA-36-2542-01 7 98574269 98574269 A G TRRAP Missense_Mutation p.N2701S 0.20 possibly_damaging(0.533) TCGA-36-2542-01 8 43152233 43152233 C G POTEA RNA 0.13 TCGA-36-2542-01 8 67049400 67049400 T C TRIM55 Missense_Mutation p.L193P 0.10 deleterious(0) probably_damaging(0.968) TCGA-36-2542-01 8 67049401 67049401 G T TRIM55 Silent p.L193L 0.10 TCGA-36-2542-01 9 100353682 100353682 G A TMOD1 Missense_Mutation p.R327Q 0.54 deleterious(0) probably_damaging(0.978) TCGA-36-2542-01 9 95572089 95572089 C G ANKRD19P RNA 0.09 TCGA-36-2542-01 X 105011288 105011288 T A IL1RAPL2 Silent p.P565P 0.34 TCGA-36-2542-01 X 118972370 118972370 T A UPF3B Nonsense_Mutation p.K323* 0.10 TCGA-36-2542-01 X 23412062 23412062 G C PTCHD1 Silent p.L809L 0.41 TCGA-36-2542-01 X 53115193 53115193 G A TSPYL2 Missense_Mutation p.G540D 0.32 tolerated_low_confidence(0.19) probably_damaging(0.959) TCGA-36-2543-01 10 105110480 105110480 G T PCGF6 Nonsense_Mutation p.S115* 0.26 TCGA-36-2543-01 10 105110481 105110481 A C PCGF6 Missense_Mutation p.S115A 0.26 tolerated(0.22) benign(0) TCGA-36-2543-01 10 31138940 31138940 C G ZNF438 Missense_Mutation p.A132P 0.31 tolerated(0.25) benign(0.022) TCGA-36-2543-01 10 43600516 43600516 G A RET Missense_Mutation p.G248S 0.27 tolerated(0.32) benign(0.031) TCGA-36-2543-01 11 117302345 117302345 C T DSCAML1 Missense_Mutation p.R1820H 0.23 tolerated(0.79) benign(0.014) TCGA-36-2543-01 11 118390715 118390715 C T KMT2A Missense_Mutation p.R3789C 0.03 probably_damaging(0.935) TCGA-36-2543-01 11 120918333 120918333 C T TBCEL Missense_Mutation p.S77L 0.26 tolerated(0.34) benign(0) TCGA-36-2543-01 11 4790675 4790675 A G OR51F1 Missense_Mutation p.I158T 0.62 tolerated(0.07) benign(0.03) TCGA-36-2543-01 11 55944839 55944839 C G OR5J2 Missense_Mutation p.T249S 0.53 tolerated(0.23) benign(0.236) TCGA-36-2543-01 11 62365832 62365832 C G MTA2 Missense_Mutation p.E113D 0.21 tolerated(0.06) probably_damaging(0.992) TCGA-36-2543-01 11 63994371 63994371 G A NUDT22 Missense_Mutation p.G83S 0.47 deleterious(0.01) probably_damaging(0.996) TCGA-36-2543-01 11 64627570 64627570 G A EHD1 Silent p.P247P 0.21 TCGA-36-2543-01 11 74413945 74413945 G C CHRDL2 Silent p.V338V 0.03 TCGA-36-2543-01 11 9803138 9803138 A C SBF2 Missense_Mutation p.I1789M 0.26 deleterious(0) probably_damaging(0.999) TCGA-36-2543-01 12 41316223 41316223 C T CNTN1 Silent p.S131S 0.41 TCGA-36-2543-01 12 50513995 50513995 A T COX14 Missense_Mutation p.M57L 0.36 tolerated_low_confidence(1) benign(0) TCGA-36-2543-01 12 53224025 53224025 C G KRT79 Silent p.V250V 0.34 TCGA-36-2543-01 15 40558489 40558489 G A PAK6 Missense_Mutation p.M217I 0.66 tolerated(0.19) benign(0) TCGA-36-2543-01 16 30975449 30975449 C G SETD1A Missense_Mutation p.A225G 0.26 benign(0.158) TCGA-36-2543-01 17 18219709 18219709 G C SMCR8 Missense_Mutation p.L202F 0.30 deleterious(0) probably_damaging(1) TCGA-36-2543-01 17 29665110 29665110 C T NF1 Nonsense_Mutation p.R2258* 0.65 TCGA-36-2543-01 17 34236332 34236332 G T AC015849.16 RNA 0.24 TCGA-36-2543-01 17 34236644 34236644 G T AC015849.16 RNA 0.42 TCGA-36-2543-01 17 64782999 64782999 T G PRKCA Silent p.G540G 0.15 TCGA-36-2543-01 17 7577153 7577153 C A TP53 Missense_Mutation p.G262V 0.64 deleterious(0) probably_damaging(0.994) TCGA-36-2543-01 17 79845839 79845850 AAAAAAAAAAAG - ALYREF 3'UTR 0.23 TCGA-36-2543-01 19 13035072 13035072 C T FARSA Silent p.K427K 0.21 TCGA-36-2543-01 19 1969714 1969714 G T CSNK1G2 5'UTR 0.59 TCGA-36-2543-01 19 37853871 37853871 C G HKR1 Missense_Mutation p.R392G 0.39 deleterious(0.01) possibly_damaging(0.872) TCGA-36-2543-01 19 38800255 38800255 C G YIF1B Missense_Mutation p.Q29H 0.30 tolerated(0.13) benign(0.001) TCGA-36-2543-01 19 40433851 40433851 C T FCGBP Missense_Mutation p.G140S 0.18 possibly_damaging(0.607) TCGA-36-2543-01 19 47542391 47542391 C G NPAS1 Silent p.V262V 0.12 TCGA-36-2543-01 19 5039897 5039897 C T KDM4B Silent p.D64D 0.64 TCGA-36-2543-01 19 52196155 52196155 C G SPACA6P-AS RNA 0.50 TCGA-36-2543-01 19 52569725 52569725 T C ZNF841 Silent p.S470S 0.35 TCGA-36-2543-01 1 110168957 110168957 G T AMPD2 Missense_Mutation p.G201C 0.64 deleterious(0.02) possibly_damaging(0.598) TCGA-36-2543-01 1 161789467 161789467 A T ATF6 Missense_Mutation p.E318D 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-36-2543-01 1 180163347 180163347 G C QSOX1 Splice_Site p.X430_splice 0.50 TCGA-36-2543-01 1 190067657 190067657 G A BRINP3 Missense_Mutation p.R598W 0.23 deleterious(0) possibly_damaging(0.798) TCGA-36-2543-01 1 231858341 231858341 C G DISC1 Intron 0.05 TCGA-36-2543-01 1 235397796 235397796 A C ARID4B Silent p.P199P 0.28 TCGA-36-2543-01 1 236751310 236751310 C G HEATR1 Missense_Mutation p.V522L 0.50 tolerated(0.68) benign(0.012) TCGA-36-2543-01 1 24140781 24140781 C G HMGCL Missense_Mutation p.E132D 0.10 deleterious(0.04) possibly_damaging(0.675) TCGA-36-2543-01 1 244755027 244755027 T C C1orf101 Missense_Mutation p.I728T 0.17 deleterious(0.01) probably_damaging(0.987) TCGA-36-2543-01 1 245022057 245022057 C T HNRNPU Missense_Mutation p.E402K 0.05 deleterious(0) unknown(0) TCGA-36-2543-01 1 37291203 37291203 C A GRIK3 Splice_Site p.X585_splice 0.41 TCGA-36-2543-01 1 44070598 44070598 C T PTPRF Missense_Mutation p.A1021V 0.52 deleterious(0.04) benign(0.047) TCGA-36-2543-01 20 30309760 30309760 G C BCL2L1 Missense_Mutation p.Q88E 0.09 tolerated(0.88) benign(0.282) TCGA-36-2543-01 20 60883116 60883116 C T ADRM1 Missense_Mutation p.P299L 0.35 deleterious(0) unknown(0) TCGA-36-2543-01 2 102968130 102968130 G A IL1RL1 Missense_Mutation p.D474N 0.36 tolerated(0.33) benign(0.208) TCGA-36-2543-01 2 26700092 26700092 T A OTOF Missense_Mutation p.K824M 0.35 tolerated(0.41) benign(0.09) TCGA-36-2543-01 2 27532712 27532712 G C MPV17 3'UTR 0.07 TCGA-36-2543-01 2 71801345 71801345 G A DYSF Silent p.A1082A 0.46 TCGA-36-2543-01 2 96934374 96934374 G C CIAO1 Missense_Mutation p.Q223H 0.03 tolerated(0.08) benign(0.25) TCGA-36-2543-01 3 111927095 111927095 A T SLC9C1 Missense_Mutation p.I639N 0.38 deleterious(0) possibly_damaging(0.536) TCGA-36-2543-01 3 124483356 124483356 C G ITGB5 Missense_Mutation p.G729A 0.05 tolerated(0.96) possibly_damaging(0.694) TCGA-36-2543-01 3 128126996 128126998 AGG - EEFSEC In_Frame_Del p.E564del 0.68 TCGA-36-2543-01 3 196657885 196657885 A C SENP5 3'UTR 0.27 TCGA-36-2543-01 3 42448718 42448718 A G LYZL4 Missense_Mutation p.L9P 0.04 deleterious(0) probably_damaging(0.997) TCGA-36-2543-01 3 49377436 49377436 G A USP4 Missense_Mutation p.R8C 0.34 deleterious_low_confidence(0.05) benign(0) TCGA-36-2543-01 3 50005100 50005100 C T RBM6 Missense_Mutation p.P81L 0.19 deleterious_low_confidence(0.03) benign(0.02) TCGA-36-2543-01 3 51895690 51895690 T C IQCF2 Missense_Mutation p.V3A 0.28 deleterious(0) benign(0.03) TCGA-36-2543-01 4 145038082 145038082 G C GYPA Silent p.L94L 0.50 TCGA-36-2543-01 4 184562609 184562609 C A RWDD4 Missense_Mutation p.G183C 0.05 deleterious(0) possibly_damaging(0.86) TCGA-36-2543-01 4 47605609 47605609 G A CORIN Missense_Mutation p.R873C 0.60 deleterious(0.04) probably_damaging(0.982) TCGA-36-2543-01 5 114607081 114607081 A G CCDC112 Silent p.H387H 0.37 TCGA-36-2543-01 5 129072808 129072808 G A ADAMTS19 Missense_Mutation p.R1174Q 0.33 tolerated(0.07) possibly_damaging(0.904) TCGA-36-2543-01 5 74325582 74325582 T C GCNT4 Missense_Mutation p.D94G 0.36 tolerated(0.25) benign(0.028) TCGA-36-2543-01 6 10586456 10586456 G A GCNT2 Intron 0.50 TCGA-36-2543-01 6 110300600 110300600 G A GPR6 Silent p.A95A 0.28 TCGA-36-2543-01 6 30297548 30297548 G T TRIM39 Splice_Site p.X151_splice 0.23 TCGA-36-2543-01 6 31541152 31541152 G C LTA Silent p.L100L 0.24 TCGA-36-2543-01 6 33652595 33652595 C T ITPR3 Silent p.L1728L 0.08 TCGA-36-2543-01 6 36075286 36075286 C T MAPK14 Missense_Mutation p.A299V 0.33 tolerated(0.14) probably_damaging(1) TCGA-36-2543-01 6 41243843 41243843 A C TREM1 3'UTR 0.37 TCGA-36-2543-01 7 107204449 107204449 C G COG5 5'UTR 0.17 TCGA-36-2543-01 7 30054392 30054392 T C FKBP14 Missense_Mutation p.I199V 0.36 deleterious(0) possibly_damaging(0.851) TCGA-36-2543-01 7 4900691 4900691 C T PAPOLB Missense_Mutation p.A250T 0.35 deleterious(0) probably_damaging(0.994) TCGA-36-2543-01 7 92763495 92763495 C G SAMD9L Missense_Mutation p.R597T 0.32 deleterious(0.02) probably_damaging(0.994) TCGA-36-2543-01 8 103317451 103317451 G T UBR5 Missense_Mutation p.Q897K 0.55 tolerated(0.57) possibly_damaging(0.824) TCGA-36-2543-01 8 133734347 133734347 G C TMEM71 Missense_Mutation p.Q212E 0.36 tolerated(0.15) benign(0.009) TCGA-36-2543-01 8 56866545 56866545 T G LYN Splice_Site p.X264_splice 0.36 TCGA-36-2543-01 8 57228799 57228799 C A SDR16C5 Missense_Mutation p.K36N 0.16 deleterious(0) probably_damaging(0.999) TCGA-36-2543-01 8 67062653 67062653 A T TRIM55 Missense_Mutation p.N313Y 0.04 deleterious(0) benign(0.418) TCGA-36-2543-01 9 117579 117579 C A FOXD4 Missense_Mutation p.D181Y 0.17 deleterious(0) probably_damaging(0.998) TCGA-36-2543-01 9 134038482 134038482 T C NUP214 Missense_Mutation p.L882P 0.06 probably_damaging(0.976) TCGA-36-2543-01 9 35609518 35609518 C A TESK1 Missense_Mutation p.P554T 0.38 tolerated(0.96) probably_damaging(0.992) TCGA-36-2543-01 9 39109165 39109165 C T CNTNAP3 Missense_Mutation p.R786H 0.37 tolerated(0.66) benign(0.004) TCGA-36-2543-01 9 77390934 77390934 G A TRPM6 Missense_Mutation p.R1090C 0.61 deleterious(0) possibly_damaging(0.841) TCGA-36-2543-01 X 101098106 101098106 C T NXF5 5'UTR 0.34 TCGA-36-2543-01 X 107084583 107084583 G A MID2 Missense_Mutation p.A230T 0.32 tolerated(0.07) benign(0.017) TCGA-36-2543-01 X 135428631 135428631 T G GPR112 Missense_Mutation p.S922R 0.39 deleterious(0.02) possibly_damaging(0.518) TCGA-36-2543-01 X 147967464 147967464 T C AFF2 Silent p.L436L 0.20 TCGA-36-2544-01 10 100189400 100189400 C T HPS1 Splice_Site p.X290_splice 0.93 TCGA-36-2544-01 10 49459740 49459740 A G FRMPD2 Intron 0.62 TCGA-36-2544-01 10 75277097 75277097 C G USP54 Missense_Mutation p.K1029N 0.26 deleterious_low_confidence(0) benign(0.282) TCGA-36-2544-01 11 108383766 108383766 G C EXPH5 Missense_Mutation p.P823R 0.49 deleterious(0.01) possibly_damaging(0.838) TCGA-36-2544-01 11 17742511 17742511 C A MYOD1 Nonsense_Mutation p.Y231* 0.85 TCGA-36-2544-01 11 56756895 56756895 C A OR5AK2 Nonsense_Mutation p.C169* 0.47 TCGA-36-2544-01 11 57135859 57135859 C A P2RX3 Missense_Mutation p.N317K 0.42 deleterious(0.01) benign(0.349) TCGA-36-2544-01 11 62297752 62297752 G T AHNAK Missense_Mutation p.H1379Q 0.31 benign(0.219) TCGA-36-2544-01 11 74303648 74303648 G A POLD3 5'UTR 0.28 TCGA-36-2544-01 12 104031811 104031811 C T STAB2 Nonsense_Mutation p.R243* 0.44 TCGA-36-2544-01 12 15654706 15654706 C T PTPRO Missense_Mutation p.P272S 0.46 tolerated_low_confidence(0.43) benign(0.004) TCGA-36-2544-01 12 54338822 54338822 C A HOXC13 Missense_Mutation p.R259S 0.48 deleterious(0) possibly_damaging(0.814) TCGA-36-2544-01 12 54576197 54576197 G A SMUG1 Missense_Mutation p.P166S 0.44 deleterious(0.04) possibly_damaging(0.566) TCGA-36-2544-01 12 56711171 56711171 A T PAN2 3'UTR 0.41 TCGA-36-2544-01 13 25363856 25363856 A G RNF17 Missense_Mutation p.E294G 0.29 tolerated(0.06) probably_damaging(0.932) TCGA-36-2544-01 14 39591656 39591656 G T GEMIN2 Missense_Mutation p.G143V 0.05 deleterious(0.04) possibly_damaging(0.703) TCGA-36-2544-01 14 55326408 55326408 T A GCH1 Missense_Mutation p.K167I 0.61 deleterious(0) probably_damaging(0.996) TCGA-36-2544-01 14 59950697 59950697 C A L3HYPDH Missense_Mutation p.R113L 0.43 deleterious(0) probably_damaging(1) TCGA-36-2544-01 14 65249227 65249227 C A SPTB Silent p.L1349L 0.57 TCGA-36-2544-01 14 94467521 94467521 T A LINC00521 RNA 0.47 TCGA-36-2544-01 15 66821190 66821190 A G ZWILCH Missense_Mutation p.T324A 0.25 tolerated(0.22) benign(0.02) TCGA-36-2544-01 15 78486862 78486862 T C ACSBG1 Missense_Mutation p.K147E 0.32 deleterious(0) probably_damaging(0.936) TCGA-36-2544-01 15 91448687 91448687 G A MAN2A2 Silent p.P113P 0.61 TCGA-36-2544-01 15 91512754 91512754 C A PRC1 Missense_Mutation p.G558C 0.42 deleterious(0.02) benign(0.114) TCGA-36-2544-01 16 49315292 49315292 C A CBLN1 Missense_Mutation p.V29L 0.33 tolerated(0.13) benign(0.02) TCGA-36-2544-01 17 12626204 12626204 G C MYOCD Missense_Mutation p.K98N 0.14 deleterious(0) probably_damaging(0.998) TCGA-36-2544-01 17 19552332 19552332 G T ALDH3A2 Silent p.R16R 0.87 TCGA-36-2544-01 17 41246566 41246567 AT - BRCA1 Frame_Shift_Del p.C328* 0.61 TCGA-36-2544-01 17 45479570 45479571 - T EFCAB13 Splice_Site p.X673_splice 0.45 TCGA-36-2544-01 17 5009610 5009610 G A ZNF232 Nonsense_Mutation p.Q282* 0.90 TCGA-36-2544-01 17 7579390 7579393 GGAA - TP53 Frame_Shift_Del p.S99Rfs*23 0.87 TCGA-36-2544-01 18 8798104 8798104 C T SOGA2 Missense_Mutation p.P751S 0.43 tolerated(0.22) benign(0.023) TCGA-36-2544-01 19 14938717 14938717 A C OR7A5 Missense_Mutation p.F113V 0.40 deleterious_low_confidence(0) benign(0.126) TCGA-36-2544-01 19 15383927 15383927 C T BRD4 5'UTR 0.08 TCGA-36-2544-01 19 17396546 17396546 C T ANKLE1 Silent p.C531C 0.44 TCGA-36-2544-01 19 19603513 19603513 G A GATAD2A Missense_Mutation p.A176T 0.36 tolerated(0.31) benign(0.001) TCGA-36-2544-01 19 55106291 55106291 G A LILRA1 Missense_Mutation p.V78M 0.03 tolerated(0.13) benign(0.317) TCGA-36-2544-01 19 58232130 58232130 C A ZNF671 Missense_Mutation p.V442L 0.03 tolerated(0.36) benign(0.005) TCGA-36-2544-01 1 110737464 110737464 C G SLC6A17 Intron 0.55 TCGA-36-2544-01 1 111773364 111773364 G T CHI3L2 Missense_Mutation p.G24V 0.18 tolerated(0.12) benign(0.081) TCGA-36-2544-01 1 152733791 152733791 G A KPRP Missense_Mutation p.S576N 0.52 deleterious_low_confidence(0.05) benign(0.383) TCGA-36-2544-01 1 20005164 20005164 G A HTR6 Silent p.L273L 0.92 TCGA-36-2544-01 1 220971268 220971268 C T MARC1 Missense_Mutation p.A222V 0.48 tolerated(0.28) benign(0.032) TCGA-36-2544-01 1 28099860 28099860 C T STX12 Silent p.P14P 0.92 TCGA-36-2544-01 1 37975112 37975112 G A MEAF6 Missense_Mutation p.R80W 0.28 deleterious(0.02) benign(0.043) TCGA-36-2544-01 1 53730058 53730058 C T LRP8 Missense_Mutation p.D480N 0.10 tolerated(0.12) probably_damaging(0.999) TCGA-36-2544-01 1 68896808 68896808 C G RPE65 Missense_Mutation p.D464H 0.29 tolerated(0.07) possibly_damaging(0.59) TCGA-36-2544-01 20 56136665 56136665 C T PCK1 Silent p.L66L 0.53 TCGA-36-2544-01 21 31588306 31588306 G C CLDN8 5'UTR 0.36 TCGA-36-2544-01 21 34067449 34067449 C G SYNJ1 Missense_Mutation p.S247T 0.38 deleterious(0) probably_damaging(0.993) TCGA-36-2544-01 22 23629403 23629403 G C BCR Missense_Mutation p.E822Q 0.83 tolerated(0.07) probably_damaging(0.913) TCGA-36-2544-01 22 51008064 51008064 T C CPT1B Missense_Mutation p.I726V 0.86 tolerated(0.1) benign(0.086) TCGA-36-2544-01 2 203420683 203420700 AACAAAAGAGCCCCGGCT - BMPR2 In_Frame_Del p.T766_L771del 0.52 TCGA-36-2544-01 2 21229396 21229396 G A APOB Silent p.T3448T 0.91 TCGA-36-2544-01 2 218925694 218925694 A C CXCR2P1 RNA 0.46 TCGA-36-2544-01 2 48701861 48701861 G C PPP1R21 Silent p.A376A 0.28 TCGA-36-2544-01 3 10442673 10442673 G T ATP2B2 Missense_Mutation p.R249S 0.44 deleterious(0.02) benign(0.392) TCGA-36-2544-01 3 132400688 132400688 C G NPHP3 3'UTR 0.94 TCGA-36-2544-01 3 138738870 138738870 G A PRR23B Missense_Mutation p.R212C 0.07 tolerated(0.18) benign(0.013) TCGA-36-2544-01 3 155267709 155267709 A T PLCH1 Missense_Mutation p.I398N 0.95 deleterious(0) probably_damaging(0.969) TCGA-36-2544-01 3 173322764 173322764 T A NLGN1 Missense_Mutation p.L126M 0.05 deleterious(0.03) probably_damaging(0.984) TCGA-36-2544-01 3 45559524 45559524 C T LARS2 Missense_Mutation p.A725V 0.39 tolerated(0.26) benign(0.026) TCGA-36-2544-01 4 102783720 102783720 T C BANK1 Missense_Mutation p.V221A 0.88 tolerated(0.11) benign(0.34) TCGA-36-2544-01 4 38828762 38828762 C G TLR6 Missense_Mutation p.R778T 0.43 deleterious(0.02) probably_damaging(0.988) TCGA-36-2544-01 5 145872522 145872522 C T TCERG1 Missense_Mutation p.R718C 0.43 deleterious(0) unknown(0) TCGA-36-2544-01 5 149212411 149212411 C A PPARGC1B Missense_Mutation p.P259T 0.29 tolerated(0.2) possibly_damaging(0.663) TCGA-36-2544-01 5 41731710 41731710 A T OXCT1 3'UTR 0.31 TCGA-36-2544-01 6 170626612 170626612 C A FAM120B Missense_Mutation p.A45D 0.78 deleterious(0) probably_damaging(0.999) TCGA-36-2544-01 6 27860619 27860619 G A HIST1H2AM Silent p.I103I 0.03 TCGA-36-2544-01 6 30680632 30680632 C G MDC1 Missense_Mutation p.A363P 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-36-2544-01 6 43400295 43400295 G C ABCC10 Missense_Mutation p.G193R 0.44 tolerated(0.55) benign(0.034) TCGA-36-2544-01 6 43416866 43416866 G C ABCC10 Missense_Mutation p.G1376A 0.04 deleterious(0.01) benign(0.245) TCGA-36-2544-01 6 73843315 73843315 C T KCNQ5 Silent p.F492F 0.42 TCGA-36-2544-01 7 100684246 100684246 C A MUC17 Silent p.T3183T 0.43 TCGA-36-2544-01 7 150774420 150774420 G C FASTK Missense_Mutation p.T423S 0.82 tolerated(0.26) probably_damaging(0.997) TCGA-36-2544-01 7 151848574 151848574 C G KMT2C Missense_Mutation p.G4207R 0.73 probably_damaging(1) TCGA-36-2544-01 7 41729641 41729641 C A INHBA Missense_Mutation p.Q296H 0.44 tolerated(0.32) possibly_damaging(0.796) TCGA-36-2544-01 7 44467273 44467273 T G NUDCD3 Missense_Mutation p.D180A 0.03 deleterious(0) benign(0.416) TCGA-36-2544-01 7 92765038 92765038 C G SAMD9L Missense_Mutation p.D83H 0.42 tolerated(0.14) benign(0.008) TCGA-36-2544-01 8 38095663 38095663 G T DDHD2 Silent p.T186T 0.44 TCGA-36-2544-01 8 42218810 42218810 C T POLB Intron 0.44 TCGA-36-2544-01 9 2104000 2104000 C G SMARCA2 Intron 0.43 TCGA-36-2544-01 9 75404198 75404198 G T TMC1 Missense_Mutation p.D397Y 0.08 deleterious(0.01) possibly_damaging(0.805) TCGA-36-2544-01 X 118723301 118723301 A G NKRF 3'UTR 0.48 TCGA-36-2544-01 X 22012496 22012496 C T SMS 3'UTR 0.51 TCGA-36-2544-01 X 38182167 38182167 G C RPGR Missense_Mutation p.N62K 0.43 probably_damaging(1) TCGA-36-2544-01 X 51644798 51644798 G A MAGED1 Silent p.G759G 0.49 TCGA-36-2544-01 X 54161410 54161410 G T FAM120C Missense_Mutation p.S490R 0.43 tolerated(0.16) benign(0.01) TCGA-36-2544-01 X 67941906 67941906 G C STARD8 Missense_Mutation p.S826T 0.45 tolerated(0.51) benign(0.173) TCGA-36-2545-01 10 102262135 102262147 TCAGATTCTGTGG - SEC31B Frame_Shift_Del p.T425Nfs*3 0.25 TCGA-36-2545-01 10 134660515 134660515 G T TTC40 Missense_Mutation p.A2063E 0.80 deleterious(0.01) benign(0.422) TCGA-36-2545-01 10 26790054 26790054 A T APBB1IP Intron 0.29 TCGA-36-2545-01 10 5005701 5005701 G C AKR1C1 Missense_Mutation p.G22A 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-36-2545-01 11 116730119 116730119 G T SIK3 Missense_Mutation p.S770Y 0.22 deleterious_low_confidence(0) possibly_damaging(0.466) TCGA-36-2545-01 11 120198021 120198021 G A TMEM136 5'UTR 0.39 TCGA-36-2545-01 11 121429447 121429447 T C SORL1 Silent p.D937D 0.13 TCGA-36-2545-01 11 61562915 61562915 G T FEN1 Missense_Mutation p.G28C 0.14 deleterious(0) probably_damaging(1) TCGA-36-2545-01 11 73078743 73078743 G C ARHGEF17 Missense_Mutation p.R2037P 0.30 deleterious(0) possibly_damaging(0.87) TCGA-36-2545-01 11 73714832 73714832 G C UCP3 Intron 0.38 TCGA-36-2545-01 12 10525659 10525659 C T KLRK1 3'UTR 0.32 TCGA-36-2545-01 12 14993570 14993570 C A ART4 Missense_Mutation p.G221V 0.19 deleterious(0.01) possibly_damaging(0.477) TCGA-36-2545-01 12 2973660 2973660 C G FOXM1 Silent p.R364R 0.35 TCGA-36-2545-01 14 102476663 102476663 G A DYNC1H1 Missense_Mutation p.R2091Q 0.33 probably_damaging(1) TCGA-36-2545-01 14 21971365 21971365 A G METTL3 Missense_Mutation p.I225T 0.13 deleterious(0) probably_damaging(0.919) TCGA-36-2545-01 14 65289844 65289844 C G SPTB 5'UTR 0.22 TCGA-36-2545-01 15 25925360 25925360 C T ATP10A Silent p.P1258P 0.34 TCGA-36-2545-01 15 43584208 43584208 A C TGM7 Missense_Mutation p.F176C 0.47 tolerated(0.1) possibly_damaging(0.711) TCGA-36-2545-01 16 14041820 14041822 TCT - ERCC4 In_Frame_Del p.L791del 0.39 TCGA-36-2545-01 16 1449440 1449440 G T UNKL Silent p.G223G 0.71 TCGA-36-2545-01 16 2349517 2349517 T G ABCA3 Missense_Mutation p.N543T 0.28 deleterious(0.03) benign(0.006) TCGA-36-2545-01 16 27460570 27460570 C T IL21R Missense_Mutation p.P528L 0.32 deleterious(0) probably_damaging(0.995) TCGA-36-2545-01 17 19250429 19250429 C G B9D1 Intron 0.44 TCGA-36-2545-01 17 45820495 45820495 G T TBX21 Missense_Mutation p.Q235H 0.63 deleterious(0) benign(0.174) TCGA-36-2545-01 17 45820496 45820496 G T TBX21 Nonsense_Mutation p.E236* 0.64 TCGA-36-2545-01 17 5009372 5009372 C T ZNF232 Missense_Mutation p.C361Y 0.28 deleterious(0.03) possibly_damaging(0.879) TCGA-36-2545-01 17 67411118 67411118 A G MAP2K6 5'UTR 0.72 TCGA-36-2545-01 17 73723323 73723323 G A ITGB4 Missense_Mutation p.R43H 0.19 deleterious(0) probably_damaging(1) TCGA-36-2545-01 17 7573984 7573984 A - TP53 Frame_Shift_Del p.L348Wfs*22 0.44 TCGA-36-2545-01 19 18496969 18496969 G C GDF15 5'UTR 0.43 TCGA-36-2545-01 19 33372864 33372864 T A CEP89 Missense_Mutation p.E674V 0.45 deleterious(0) possibly_damaging(0.866) TCGA-36-2545-01 19 35449623 35449623 G C ZNF792 Missense_Mutation p.S379C 0.21 deleterious(0.03) probably_damaging(0.997) TCGA-36-2545-01 19 45406183 45406183 G A TOMM40 Intron 0.10 TCGA-36-2545-01 19 51273967 51273967 A G GPR32 Missense_Mutation p.E37G 0.36 tolerated(0.06) benign(0.025) TCGA-36-2545-01 19 55805403 55805403 C T BRSK1 Silent p.P159P 0.19 TCGA-36-2545-01 1 103573742 103573742 C A COL11A1 5'UTR 0.39 TCGA-36-2545-01 1 115420722 115420722 T A SYCP1 Missense_Mutation p.L270Q 0.21 tolerated(0.08) probably_damaging(0.969) TCGA-36-2545-01 1 152882688 152882688 G C IVL Missense_Mutation p.V139L 0.25 tolerated_low_confidence(0.19) unknown(0) TCGA-36-2545-01 1 155263070 155263094 GCTGCCCGACGTAGCTCCTCAAACA - PKLR Frame_Shift_Del p.L437Rfs*3 0.17 TCGA-36-2545-01 1 156845442 156845442 A G NTRK1 Silent p.Q495Q 0.16 TCGA-36-2545-01 1 167404461 167404461 C T CD247 Intron 0.10 TCGA-36-2545-01 1 173962001 173962001 G C RC3H1 Missense_Mutation p.C41W 0.16 deleterious(0) probably_damaging(1) TCGA-36-2545-01 1 175063337 175063337 G C TNN Missense_Mutation p.W512C 0.31 deleterious(0) probably_damaging(0.999) TCGA-36-2545-01 1 179057054 179057054 G A TOR3A Silent p.L216L 0.16 TCGA-36-2545-01 1 31191762 31191762 G A MATN1 Nonsense_Mutation p.Q162* 0.69 TCGA-36-2545-01 1 32266120 32266122 CAT - SPOCD1 In_Frame_Del p.M508del 0.63 TCGA-36-2545-01 1 44069379 44069379 C T PTPRF Silent p.G852G 0.18 TCGA-36-2545-01 1 46193309 46193309 T C IPP Missense_Mutation p.I348V 0.37 tolerated(0.37) benign(0.252) TCGA-36-2545-01 1 94522196 94522196 G T ABCA4 Silent p.A781A 0.28 TCGA-36-2545-01 20 18794395 18794395 G T SCP2D1 5'UTR 0.48 TCGA-36-2545-01 20 24964563 24964563 G C APMAP Missense_Mutation p.S63C 0.08 tolerated(0.33) benign(0.053) TCGA-36-2545-01 21 35893746 35893746 G A RCAN1 Intron 0.38 TCGA-36-2545-01 22 39224376 39224376 G C NPTXR Missense_Mutation p.L256V 0.16 tolerated(0.11) benign(0.219) TCGA-36-2545-01 22 39795804 39795804 C G TAB1 5'UTR 0.06 TCGA-36-2545-01 22 42032774 42032774 G C XRCC6 Missense_Mutation p.G197R 0.17 deleterious(0) probably_damaging(0.999) TCGA-36-2545-01 22 50216771 50216771 T A BRD1 Missense_Mutation p.N399Y 0.26 deleterious(0.02) possibly_damaging(0.498) TCGA-36-2545-01 2 204292191 204292191 A G ABI2 3'UTR 0.23 TCGA-36-2545-01 2 208477892 208477892 G A METTL21A Missense_Mutation p.R179W 0.28 deleterious(0.01) benign(0.169) TCGA-36-2545-01 2 219103497 219103497 A G ARPC2 Missense_Mutation p.K127E 0.41 tolerated(0.1) benign(0.409) TCGA-36-2545-01 2 228788900 228788900 A G DAW1 3'UTR 0.38 TCGA-36-2545-01 2 71206928 71206928 C G ANKRD53 Missense_Mutation p.D185E 0.37 tolerated(0.34) benign(0.075) TCGA-36-2545-01 2 71376573 71376573 C T MPHOSPH10 Missense_Mutation p.S629F 0.20 deleterious(0) possibly_damaging(0.691) TCGA-36-2545-01 2 74592301 74592301 G C DCTN1 Missense_Mutation p.L1033V 0.33 deleterious(0) probably_damaging(0.997) TCGA-36-2545-01 2 95541370 95541370 C T TEKT4 Missense_Mutation p.A325V 0.38 tolerated(0.29) benign(0.089) TCGA-36-2545-01 3 129324764 129324788 ATGGCGATCTCGGGCGTGTTCTCGA - PLXND1 Frame_Shift_Del p.F232Sfs*41 0.33 TCGA-36-2545-01 3 167766100 167766100 C G GOLIM4 Missense_Mutation p.E81Q 0.12 deleterious(0) probably_damaging(0.94) TCGA-36-2545-01 3 38888181 38888181 G C SCN11A 3'UTR 0.17 TCGA-36-2545-01 3 52548846 52548846 G T STAB1 Splice_Site p.X1269_splice 0.41 TCGA-36-2545-01 3 69026887 69026887 G A EOGT Missense_Mutation p.P405L 0.15 deleterious(0.01) probably_damaging(0.96) TCGA-36-2545-01 6 24429276 24429276 C G GPLD1 Missense_Mutation p.S836T 0.20 tolerated(0.4) benign(0.004) TCGA-36-2545-01 6 28540532 28540532 T C SCAND3 Missense_Mutation p.N1045S 0.04 tolerated(0.08) probably_damaging(0.931) TCGA-36-2545-01 6 29943088 29943088 C T HCG9 RNA 0.10 TCGA-36-2545-01 6 30228270 30228270 G C HCG17 Intron 0.31 TCGA-36-2545-01 6 31602070 31602070 G C PRRC2A Missense_Mutation p.G1593R 0.33 unknown(0) TCGA-36-2545-01 6 35393750 35393750 G A PPARD Missense_Mutation p.R407Q 0.17 deleterious(0) probably_damaging(0.957) TCGA-36-2545-01 6 43472582 43472620 AGCCCCAGGGGCTGTGGTGCCTACCTCAGTCATTGCCCG - TJAP1 In_Frame_Del p.A222_R234del 0.35 TCGA-36-2545-01 6 47846634 47846634 A G PTCHD4 Missense_Mutation p.F649S 0.34 deleterious(0) probably_damaging(0.984) TCGA-36-2545-01 7 103029841 103029841 G A SLC26A5 Silent p.L448L 0.24 TCGA-36-2545-01 7 121652512 121652538 ACTTCGCTTAAACCTGTGCTTAGTGCA - PTPRZ1 In_Frame_Del p.T1138_A1146del 0.15 TCGA-36-2545-01 7 148716228 148716231 TATC - PDIA4 Frame_Shift_Del p.D110Kfs*24 0.18 TCGA-36-2545-01 7 150884201 150884201 G C ASB10 Missense_Mutation p.S6C 0.59 deleterious_low_confidence(0) benign(0.417) TCGA-36-2545-01 7 23808679 23808716 ACTTAAAAAATTTTATGACTGGAAGTGTGATAAAAGAG - STK31 Frame_Shift_Del p.L495Gfs*6 0.39 TCGA-36-2545-01 7 4002369 4002369 G A SDK1 Missense_Mutation p.A439T 0.62 tolerated(0.53) benign(0.017) TCGA-36-2545-01 8 103851876 103851876 A C AZIN1 Splice_Site p.X92_splice 0.09 TCGA-36-2545-01 8 119122970 119122970 A T EXT1 Missense_Mutation p.F106I 0.19 tolerated(0.07) benign(0.092) TCGA-36-2545-01 8 22475937 22475937 T G CCAR2 Missense_Mutation p.C717G 0.21 deleterious(0.01) probably_damaging(0.99) TCGA-36-2545-01 8 87588261 87588261 C A CNGB3 Missense_Mutation p.G734V 0.13 tolerated(0.16) benign(0.017) TCGA-36-2545-01 9 131703970 131703970 C A PHYHD1 Missense_Mutation p.P278T 0.28 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-36-2545-01 9 140481453 140481453 G A ZMYND19 Missense_Mutation p.R109W 0.66 deleterious(0.02) benign(0.001) TCGA-36-2545-01 9 73218366 73218366 C T TRPM3 Silent p.L884L 0.66 TCGA-36-2545-01 9 86530547 86530547 T C KIF27 5'UTR 0.11 TCGA-36-2545-01 X 101857911 101857911 T C ARMCX5 Missense_Mutation p.I281T 0.47 deleterious(0.03) benign(0.012) TCGA-36-2545-01 X 134494200 134494200 A G ZNF449 Silent p.L252L 0.13 TCGA-36-2545-01 X 152482084 152482084 G C MAGEA1 Silent p.V309V 0.12 TCGA-36-2545-01 X 152482085 152482085 A T MAGEA1 Missense_Mutation p.V309D 0.11 deleterious_low_confidence(0) unknown(0) TCGA-36-2545-01 X 152720366 152720366 C G HAUS7 Intron 0.13 TCGA-36-2545-01 X 153173342 153173342 T C ARHGAP4 Silent p.P934P 0.20 TCGA-36-2545-01 X 153713313 153713313 C T UBL4A 3'UTR 0.53 TCGA-36-2545-01 X 39932444 39932444 C A BCOR Missense_Mutation p.A719S 0.14 tolerated(0.31) probably_damaging(0.995) TCGA-36-2545-01 X 48762607 48762607 C A SLC35A2 Silent p.R193R 0.51 TCGA-36-2547-01 10 103912207 103912207 C A NOLC1 Missense_Mutation p.L14M 0.24 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-36-2547-01 10 104240612 104240643 TCCCGACATTAGAAGGTTTTTCTGTGGATGGA - ACTR1A Missense_Mutation 0.41 TCGA-36-2547-01 10 112343293 112343293 A G SMC3 Missense_Mutation p.N319S 0.19 tolerated(0.06) benign(0.007) TCGA-36-2547-01 10 121214583 121214583 C T GRK5 3'UTR 0.32 TCGA-36-2547-01 10 53227587 53227630 ACCGTCAAGAGTAAGACTATTTTCATATTTTTAAAATATTTTCA - PRKG1 Splice_Site p.X195_splice 0.23 TCGA-36-2547-01 10 71962872 71962872 C T PPA1 3'UTR 0.07 TCGA-36-2547-01 11 101362391 101362391 C G TRPC6 Missense_Mutation p.V342L 0.23 deleterious(0) benign(0.077) TCGA-36-2547-01 11 118047102 118047102 C A SCN2B Silent p.T15T 0.20 TCGA-36-2547-01 11 126079444 126079444 T C RPUSD4 Missense_Mutation p.R177G 0.09 deleterious(0.03) possibly_damaging(0.474) TCGA-36-2547-01 11 35454364 35454364 T A PAMR1 Missense_Mutation p.D585V 0.27 deleterious(0) probably_damaging(1) TCGA-36-2547-01 11 48511008 48511008 T C OR4A47 Missense_Mutation p.S222P 0.35 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-36-2547-01 11 57095779 57095779 G A SSRP1 Missense_Mutation p.P535S 0.50 tolerated(0.41) benign(0.007) TCGA-36-2547-01 11 62388127 62388127 G T B3GAT3 Nonsense_Mutation p.C33* 0.31 TCGA-36-2547-01 11 67372182 67372182 G C C11orf72 Missense_Mutation p.S120C 0.25 possibly_damaging(0.843) TCGA-36-2547-01 11 71724347 71724347 C T NUMA1 Missense_Mutation p.R1401Q 0.08 probably_damaging(0.999) TCGA-36-2547-01 11 74053598 74053598 T A PGM2L1 Nonsense_Mutation p.K514* 0.25 TCGA-36-2547-01 11 76829351 76829351 G A CAPN5 Missense_Mutation p.G374S 0.17 tolerated(1) benign(0.001) TCGA-36-2547-01 12 109182204 109182204 G A SSH1 Missense_Mutation p.R904C 0.25 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-36-2547-01 12 119961528 119961528 C G CCDC60 Nonsense_Mutation p.Y378* 0.16 TCGA-36-2547-01 12 21668639 21668639 T C GOLT1B Nonstop_Mutation p.*139Qext*19 0.09 TCGA-36-2547-01 12 3765503 3765503 C G EFCAB4B Missense_Mutation p.E278Q 0.13 tolerated(0.08) probably_damaging(0.922) TCGA-36-2547-01 12 54367695 54367695 G C HOXC11 Missense_Mutation p.G224R 0.33 deleterious(0.05) benign(0.11) TCGA-36-2547-01 12 54756634 54756634 G T GPR84 Silent p.P334P 0.26 TCGA-36-2547-01 12 57600504 57600504 C T LRP1 Missense_Mutation p.R3947W 0.12 benign(0.394) TCGA-36-2547-01 12 57861946 57861946 G C GLI1 Missense_Mutation p.R416T 0.34 tolerated(0.54) probably_damaging(0.992) TCGA-36-2547-01 12 58114203 58114203 A C OS9 Missense_Mutation p.K594Q 0.55 deleterious(0) probably_damaging(0.999) TCGA-36-2547-01 12 7361136 7361136 C A PEX5 Missense_Mutation p.A437D 0.13 deleterious(0) probably_damaging(0.977) TCGA-36-2547-01 12 8278166 8278166 A G CLEC4A Missense_Mutation p.E31G 0.35 tolerated(0.14) benign(0.049) TCGA-36-2547-01 13 41766912 41766912 C T KBTBD7 Missense_Mutation p.M494I 0.34 tolerated(0.06) benign(0.315) TCGA-36-2547-01 13 50134205 50134205 G C RCBTB1 Missense_Mutation p.A98G 0.52 tolerated(0.09) benign(0.071) TCGA-36-2547-01 14 23777076 23777076 G T BCL2L2-PABPN1 Missense_Mutation p.G34W 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-36-2547-01 14 23793585 23793585 C A PABPN1 Intron 0.25 TCGA-36-2547-01 14 51224245 51224276 ACTTCCTGTCTCTGAACAGAGCTCGTCCCTGT - NIN Frame_Shift_Del p.T1158Qfs*6 0.45 TCGA-36-2547-01 15 22709696 22709696 T G AC116165.1 5'Flank 0.19 TCGA-36-2547-01 15 63032942 63032942 G A TLN2 Silent p.A1333A 0.09 TCGA-36-2547-01 15 71184262 71184262 G T THAP10 Missense_Mutation p.A117E 0.22 deleterious(0.03) benign(0.146) TCGA-36-2547-01 15 85447422 85447459 TGCGTGTTCGTCGCTCTCCTCTTTGCCTGCTCAAAGCA - SLC28A1 Frame_Shift_Del p.C186Sfs*109 0.16 TCGA-36-2547-01 16 15122905 15122905 G C PDXDC1 Intron 0.16 TCGA-36-2547-01 16 57181468 57181469 AA - CPNE2 Frame_Shift_Del p.K516Rfs*22 0.41 TCGA-36-2547-01 16 57800814 57800814 C G KIFC3 Missense_Mutation p.K434N 0.19 deleterious(0) possibly_damaging(0.721) TCGA-36-2547-01 16 747033 747033 G A FBXL16 Missense_Mutation p.R125W 0.07 deleterious(0) probably_damaging(0.991) TCGA-36-2547-01 16 75258620 75258620 C T CTRB1 Silent p.P216P 0.39 TCGA-36-2547-01 16 8898695 8898695 A G PMM2 Missense_Mutation p.R84G 0.24 tolerated(0.06) benign(0.057) TCGA-36-2547-01 17 18181361 18181361 C A TOP3A Missense_Mutation p.A819S 0.30 tolerated(0.07) probably_damaging(0.979) TCGA-36-2547-01 17 31065331 31065331 C G MYO1D Silent p.L562L 0.76 TCGA-36-2547-01 17 38412677 38412680 GAGA - WIPF2 5'UTR 0.10 TCGA-36-2547-01 17 39775843 39775843 T C KRT17 3'UTR 0.27 TCGA-36-2547-01 17 40328120 40328120 G A KCNH4 Nonsense_Mutation p.R261* 0.05 TCGA-36-2547-01 17 48538646 48538646 A T ACSF2 Missense_Mutation p.K123I 0.05 deleterious(0.01) possibly_damaging(0.892) TCGA-36-2547-01 17 7577094 7577096 GGT CGGCGGGG TP53 Frame_Shift_Ins p.D281Afs*66 0.41 TCGA-36-2547-01 17 76967514 76967514 G T LGALS3BP 3'UTR 0.81 TCGA-36-2547-01 18 21519187 21519187 C G LAMA3 Missense_Mutation p.L2955V 0.11 benign(0.009) TCGA-36-2547-01 18 28712568 28712568 A G DSC1 Missense_Mutation p.I734T 0.48 deleterious(0.03) probably_damaging(0.999) TCGA-36-2547-01 18 7050779 7050779 T G LAMA1 Silent p.R168R 0.65 TCGA-36-2547-01 18 72998153 72998153 A G TSHZ1 Missense_Mutation p.H219R 0.32 deleterious(0) probably_damaging(1) TCGA-36-2547-01 19 14785650 14785650 C G EMR3 5'UTR 0.18 TCGA-36-2547-01 19 17838345 17838345 A T MAP1S Missense_Mutation p.S718C 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-36-2547-01 19 19790530 19790530 T A ZNF101 Silent p.V244V 0.44 TCGA-36-2547-01 19 42409343 42409343 A C ARHGEF1 Missense_Mutation p.T771P 0.30 deleterious(0.02) possibly_damaging(0.803) TCGA-36-2547-01 19 43233443 43233443 T G PSG3 Missense_Mutation p.N359H 0.26 tolerated(0.07) benign(0.313) TCGA-36-2547-01 19 991315 991315 C G WDR18 Missense_Mutation p.Q299E 0.46 tolerated(0.07) benign(0.129) TCGA-36-2547-01 1 109804474 109804474 A C CELSR2 Missense_Mutation p.S1448R 0.19 deleterious(0) probably_damaging(1) TCGA-36-2547-01 1 109856567 109856567 C G SORT1 3'UTR 0.07 TCGA-36-2547-01 1 115282494 115282494 G A CSDE1 Silent p.N52N 0.17 TCGA-36-2547-01 1 11918474 11918474 G A NPPB Missense_Mutation p.T62I 0.71 tolerated(0.5) benign(0) TCGA-36-2547-01 1 154458531 154458531 G C SHE Missense_Mutation p.H397D 0.23 deleterious(0.01) probably_damaging(1) TCGA-36-2547-01 1 159558471 159558471 C T APCS Silent p.V215V 0.19 TCGA-36-2547-01 1 173842707 173842707 A G ZBTB37 Intron 0.25 TCGA-36-2547-01 1 182545452 182545452 C A RNASEL Missense_Mutation p.G660C 0.35 deleterious(0.04) probably_damaging(0.983) TCGA-36-2547-01 1 19593797 19593797 G A AKR7L Silent p.I153I 0.32 TCGA-36-2547-01 1 207112590 207112590 G A PIGR Missense_Mutation p.P88S 0.59 deleterious(0) probably_damaging(0.987) TCGA-36-2547-01 1 213224646 213224646 C A RPS6KC1 5'UTR 0.58 TCGA-36-2547-01 1 215813953 215813953 C T USH2A Missense_Mutation p.R4972H 0.26 benign(0.068) TCGA-36-2547-01 1 223178376 223178376 A C DISP1 Missense_Mutation p.T1213P 0.89 tolerated_low_confidence(0.29) benign(0.003) TCGA-36-2547-01 1 226125021 226125021 A G LEFTY2 3'UTR 0.15 TCGA-36-2547-01 1 226551735 226551735 C T PARP1 Missense_Mutation p.D899N 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-36-2547-01 1 247587804 247587804 G A NLRP3 Silent p.V353V 0.58 TCGA-36-2547-01 1 247835658 247835658 T A OR13G1 Missense_Mutation p.E229V 0.20 deleterious(0.02) possibly_damaging(0.691) TCGA-36-2547-01 1 248458830 248458830 G C OR2T12 Missense_Mutation p.N17K 0.21 tolerated(0.18) benign(0.008) TCGA-36-2547-01 1 248512717 248512717 G T OR14C36 Missense_Mutation p.R214M 0.18 tolerated(0.38) benign(0.017) TCGA-36-2547-01 1 24995972 24995972 G A SRRM1 Missense_Mutation p.V700I 0.32 unknown(0) TCGA-36-2547-01 1 38488461 38488461 C G UTP11L Missense_Mutation p.Q220E 0.11 tolerated(0.69) benign(0.208) TCGA-36-2547-01 1 39903522 39903522 T A MACF1 Missense_Mutation p.I3962N 0.32 probably_damaging(0.991) TCGA-36-2547-01 1 40097227 40097227 G A HEYL Missense_Mutation p.R58C 0.02 deleterious(0) probably_damaging(1) TCGA-36-2547-01 1 43317034 43317034 G - ZNF691 Frame_Shift_Del p.E167Kfs*28 0.27 TCGA-36-2547-01 1 44878386 44878386 A T RNF220 Missense_Mutation p.N206I 0.21 tolerated(0.25) benign(0) TCGA-36-2547-01 1 45478570 45478570 G C UROD Intron 0.15 TCGA-36-2547-01 1 47144202 47144202 C A EFCAB14 Missense_Mutation p.L473F 0.27 tolerated(0.52) benign(0.191) TCGA-36-2547-01 1 47717183 47717183 C G STIL Missense_Mutation p.Q1164H 0.19 tolerated(0.13) benign(0.053) TCGA-36-2547-01 1 48703467 48703467 C T SLC5A9 Missense_Mutation p.P495L 0.27 deleterious(0.01) probably_damaging(1) TCGA-36-2547-01 1 76365303 76365303 G C MSH4 Missense_Mutation p.G844A 0.36 deleterious(0) probably_damaging(0.994) TCGA-36-2547-01 1 94528847 94528847 G A ABCA4 Silent p.S527S 0.35 TCGA-36-2547-01 20 17606168 17606168 C G RRBP1 Missense_Mutation p.V582L 0.12 tolerated(0.33) benign(0) TCGA-36-2547-01 20 2638646 2638646 A C NOP56 Missense_Mutation p.E497D 0.19 tolerated_low_confidence(0.28) benign(0.217) TCGA-36-2547-01 20 32677652 32677652 G C EIF2S2 Missense_Mutation p.R296G 0.08 deleterious(0) possibly_damaging(0.684) TCGA-36-2547-01 20 32693295 32693295 C T EIF2S2 Missense_Mutation p.M24I 0.14 tolerated(0.08) probably_damaging(0.914) TCGA-36-2547-01 20 39990998 39990998 G T EMILIN3 Missense_Mutation p.A404E 0.19 tolerated(0.09) benign(0.118) TCGA-36-2547-01 20 56137857 56137857 G A PCK1 Missense_Mutation p.R171Q 0.03 deleterious(0.02) possibly_damaging(0.775) TCGA-36-2547-01 20 58349307 58349316 AAGAGAAAGT - PHACTR3 Frame_Shift_Del p.R313Kfs*51 0.35 TCGA-36-2547-01 20 62737497 62737497 C T NPBWR2 Missense_Mutation p.V230M 0.20 deleterious(0.01) possibly_damaging(0.905) TCGA-36-2547-01 21 11021189 11021189 G C BAGE2 RNA 0.03 TCGA-36-2547-01 22 18570811 18570811 T G PEX26 Silent p.S296S 0.44 TCGA-36-2547-01 22 24086677 24086677 G A ZNF70 Silent p.I217I 0.19 TCGA-36-2547-01 22 32506260 32506260 C T SLC5A1 3'UTR 0.27 TCGA-36-2547-01 22 36116671 36116671 G A APOL5 Missense_Mutation p.V38I 0.26 tolerated_low_confidence(0.27) benign(0.097) TCGA-36-2547-01 22 36688211 36688211 T G MYH9 Missense_Mutation p.K1389Q 0.22 possibly_damaging(0.864) TCGA-36-2547-01 2 100210582 100210582 C G AFF3 Missense_Mutation p.C539S 0.18 tolerated(0.26) benign(0.108) TCGA-36-2547-01 2 120723115 120723115 T C PTPN4 Missense_Mutation p.W818R 0.16 deleterious(0) probably_damaging(1) TCGA-36-2547-01 2 135908055 135908055 C T RAB3GAP1 Silent p.L680L 0.82 TCGA-36-2547-01 2 15557673 15557673 T G NBAS Missense_Mutation p.K914T 0.31 tolerated(0.09) benign(0.446) TCGA-36-2547-01 2 155711326 155711339 GATTCTTTAAAGTT - KCNJ3 Frame_Shift_Del p.F337Lfs*9 0.29 TCGA-36-2547-01 2 162879287 162879287 C T DPP4 Missense_Mutation p.S349N 0.04 deleterious(0.02) probably_damaging(0.931) TCGA-36-2547-01 2 165947357 165947357 A T SCN3A Missense_Mutation p.V1769D 0.57 deleterious(0) probably_damaging(0.999) TCGA-36-2547-01 2 170938354 170938354 C T UBR3 3'UTR 0.19 TCGA-36-2547-01 2 172648092 172648092 T G SLC25A12 Missense_Mutation p.K485T 0.57 deleterious(0.01) benign(0.206) TCGA-36-2547-01 2 210569343 210569343 A T MAP2 Intron 0.26 TCGA-36-2547-01 2 220172163 220172163 T A PTPRN Intron 0.24 TCGA-36-2547-01 2 220290913 220290913 C A DES 3'UTR 0.21 TCGA-36-2547-01 2 220405693 220405693 G A CHPF Missense_Mutation p.T348M 0.26 deleterious(0) possibly_damaging(0.878) TCGA-36-2547-01 2 231926010 231926010 G T PSMD1 Nonsense_Mutation p.E16* 0.18 TCGA-36-2547-01 2 233413617 233413617 T C TIGD1 Missense_Mutation p.N326D 0.42 tolerated(0.12) benign(0.001) TCGA-36-2547-01 2 29443655 29443655 G A ALK Nonsense_Mutation p.Q1188* 0.37 TCGA-36-2547-01 2 29443656 29443656 C G ALK Silent p.L1187L 0.37 TCGA-36-2547-01 2 38978437 38978437 G A SRSF7 5'UTR 0.41 TCGA-36-2547-01 2 42578489 42578489 C T COX7A2L Missense_Mutation p.G72D 0.18 tolerated(0.08) possibly_damaging(0.903) TCGA-36-2547-01 2 53955887 53955887 T C ASB3 Missense_Mutation p.Y224C 0.06 deleterious(0) probably_damaging(1) TCGA-36-2547-01 2 61304214 61304214 C T KIAA1841 Silent p.D197D 0.12 TCGA-36-2547-01 2 64863627 64863627 C A SERTAD2 Nonsense_Mutation p.E127* 0.18 TCGA-36-2547-01 2 65492379 65492379 C T ACTR2 Intron 0.27 TCGA-36-2547-01 2 68384628 68384628 G A WDR92 5'UTR 0.20 TCGA-36-2547-01 2 70188222 70188222 C G ASPRV1 Missense_Mutation p.G200A 0.08 tolerated(0.09) probably_damaging(0.997) TCGA-36-2547-01 2 71592676 71592676 C T ZNF638 Missense_Mutation p.T612I 0.20 tolerated(0.26) benign(0.001) TCGA-36-2547-01 2 73316586 73316586 G C RAB11FIP5 Intron 0.14 TCGA-36-2547-01 2 75425938 75425961 GACCGTGTAGGCAGCTGCCCAAAG - TACR1 In_Frame_Del p.L34_V41del 0.30 TCGA-36-2547-01 2 95519316 95519316 G C ANKRD20A8P RNA 0.15 TCGA-36-2547-01 3 108818261 108818261 T A MORC1 Missense_Mutation p.T123S 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-36-2547-01 3 115561369 115561369 A T LSAMP Missense_Mutation p.S236T 0.21 tolerated(0.28) benign(0.012) TCGA-36-2547-01 3 157820636 157820636 C G SHOX2 Missense_Mutation p.G153A 0.10 tolerated(0.99) benign(0.03) TCGA-36-2547-01 3 185766215 185766215 G C ETV5 3'UTR 0.33 TCGA-36-2547-01 3 197765514 197765533 ATTTCTTCTGTGTATATGGC - LMLN Frame_Shift_Del p.F686Lfs*18 0.12 TCGA-36-2547-01 3 27161286 27161286 G T NEK10 Missense_Mutation p.S1109Y 0.23 tolerated(0.16) benign(0.356) TCGA-36-2547-01 3 38182744 38182744 G C MYD88 Missense_Mutation p.W307C 0.51 deleterious(0) probably_damaging(1) TCGA-36-2547-01 3 45067876 45067883 CTCCTCCT - CLEC3B Frame_Shift_Del p.L9Pfs*34 0.40 TCGA-36-2547-01 3 48604107 48604107 C T COL7A1 Missense_Mutation p.E2764K 0.32 probably_damaging(0.998) TCGA-36-2547-01 3 9975017 9975017 G C IL17RC Missense_Mutation p.D706H 0.27 deleterious(0) probably_damaging(0.981) TCGA-36-2547-01 4 6114562 6114562 G A JAKMIP1 Missense_Mutation p.R6W 0.37 deleterious(0) probably_damaging(0.987) TCGA-36-2547-01 4 73013238 73013238 C T NPFFR2 Silent p.G426G 0.05 TCGA-36-2547-01 4 85696070 85696070 G C WDFY3 Missense_Mutation p.L1553V 0.34 tolerated(0.1) benign(0.443) TCGA-36-2547-01 4 89042873 89042873 G T ABCG2 Silent p.I201I 0.28 TCGA-36-2547-01 4 89577085 89577085 C G HERC3 Missense_Mutation p.A323G 0.29 tolerated(1) benign(0.122) TCGA-36-2547-01 5 138643751 138643751 G A MATR3 Missense_Mutation p.R216K 0.57 tolerated(0.12) possibly_damaging(0.815) TCGA-36-2547-01 5 140604913 140604913 C T PCDHB14 Silent p.P612P 0.38 TCGA-36-2547-01 5 33637690 33637690 A C ADAMTS12 Missense_Mutation p.F627C 0.19 tolerated(0.14) possibly_damaging(0.894) TCGA-36-2547-01 5 38458444 38458444 A G EGFLAM Missense_Mutation p.M915V 0.15 tolerated(1) benign(0.002) TCGA-36-2547-01 5 55439720 55439720 G C ANKRD55 Missense_Mutation p.Q174E 0.24 deleterious(0.01) benign(0.078) TCGA-36-2547-01 5 647995 647995 T A CEP72 Missense_Mutation p.I581N 0.18 deleterious(0.03) probably_damaging(0.959) TCGA-36-2547-01 5 67586537 67586537 C T PIK3R1 Intron 0.38 TCGA-36-2547-01 5 92929390 92929390 C T NR2F1 Silent p.L372L 0.39 TCGA-36-2547-01 5 95067664 95067664 T C RHOBTB3 Missense_Mutation p.V35A 0.41 deleterious(0.01) benign(0.115) TCGA-36-2547-01 6 10831066 10831066 G C MAK 5'UTR 0.47 TCGA-36-2547-01 6 110059646 110059646 T G FIG4 Missense_Mutation p.C255W 0.29 deleterious(0) probably_damaging(0.945) TCGA-36-2547-01 6 123102305 123102305 T A FABP7 Missense_Mutation p.F105Y 0.51 deleterious(0) benign(0.016) TCGA-36-2547-01 6 132047311 132047311 A T ENPP3 Missense_Mutation p.M642L 0.17 tolerated(1) benign(0.002) TCGA-36-2547-01 6 20151460 20151460 C A MBOAT1 Missense_Mutation p.M93I 0.13 tolerated(1) benign(0.001) TCGA-36-2547-01 6 28540482 28540482 A G SCAND3 Silent p.L1062L 0.31 TCGA-36-2547-01 6 31496835 31496835 G A MCCD1 Missense_Mutation p.R15H 0.21 tolerated(0.58) benign(0) TCGA-36-2547-01 6 49583450 49583450 G T RHAG Missense_Mutation p.A176D 0.28 deleterious(0) probably_damaging(0.986) TCGA-36-2547-01 6 55039484 55039484 C G HCRTR2 Missense_Mutation p.D33E 0.12 tolerated(0.6) benign(0.003) TCGA-36-2547-01 6 7231272 7231272 T G RREB1 Silent p.P980P 0.28 TCGA-36-2547-01 6 89967689 89967689 C G GABRR2 Missense_Mutation p.M366I 0.39 tolerated(0.21) benign(0.007) TCGA-36-2547-01 7 103155865 103155865 G A RELN Missense_Mutation p.P2629L 0.08 tolerated(0.35) benign(0.029) TCGA-36-2547-01 7 134853758 134853758 G C C7orf49 5'UTR 0.10 TCGA-36-2547-01 7 138794086 138794086 G A ZC3HAV1 5'UTR 0.24 TCGA-36-2547-01 7 155255078 155255078 G A EN2 Missense_Mutation p.R233Q 0.11 deleterious(0) benign(0.266) TCGA-36-2547-01 7 44228624 44228624 C G GCK 5'UTR 0.32 TCGA-36-2547-01 7 65432891 65432891 G A GUSB Missense_Mutation p.P494S 0.18 tolerated(0.14) benign(0.046) TCGA-36-2547-01 7 65546870 65546870 C T ASL Silent p.D31D 0.20 TCGA-36-2547-01 7 87076386 87076386 G C ABCB4 Silent p.V323V 0.29 TCGA-36-2547-01 7 90492572 90492572 G A CDK14 Silent p.V191V 0.03 TCGA-36-2547-01 7 93520034 93520034 A C TFPI2 5'UTR 0.29 TCGA-36-2547-01 7 97766717 97766717 G A LMTK2 Missense_Mutation p.C65Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-36-2547-01 7 97941486 97941486 C T BAIAP2L1 Missense_Mutation p.E244K 0.08 tolerated(0.08) benign(0.426) TCGA-36-2547-01 7 99753465 99753465 G C C7orf43 Intron 0.29 TCGA-36-2547-01 8 108913149 108913149 G A RSPO2 3'UTR 0.37 TCGA-36-2547-01 8 133899410 133899410 T G TG Missense_Mutation p.V598G 0.21 deleterious(0) benign(0.124) TCGA-36-2547-01 8 142221533 142221533 C T SLC45A4 3'UTR 0.17 TCGA-36-2547-01 8 33358035 33358035 C G MAK16 3'UTR 0.38 TCGA-36-2547-01 8 41577264 41577264 G T ANK1 Missense_Mutation p.P374Q 0.38 deleterious(0.01) probably_damaging(1) TCGA-36-2547-01 8 87520853 87520853 C G RMDN1 5'UTR 0.32 TCGA-36-2547-01 9 101798461 101798461 G A COL15A1 Missense_Mutation p.G767R 0.38 deleterious(0) possibly_damaging(0.752) TCGA-36-2547-01 9 110247994 110247994 C G KLF4 3'UTR 0.39 TCGA-36-2547-01 9 117808917 117808917 G T TNC Missense_Mutation p.P1633T 0.43 tolerated(0.08) benign(0.41) TCGA-36-2547-01 9 125391625 125391625 G C OR1B1 Missense_Mutation p.L64V 0.33 deleterious(0) possibly_damaging(0.835) TCGA-36-2547-01 9 130630642 130630642 T C AK1 Silent p.E158E 0.25 TCGA-36-2547-01 9 34458838 34458838 A G DNAI1 5'UTR 0.24 TCGA-36-2547-01 9 35107716 35107716 G A FAM214B Missense_Mutation p.L186F 0.26 deleterious(0.03) benign(0.009) TCGA-36-2547-01 9 36118898 36118898 G T RECK Missense_Mutation p.A800S 0.15 tolerated(1) benign(0.001) TCGA-36-2547-01 X 119293027 119293027 G A RHOXF2 Silent p.S62S 0.24 TCGA-36-2547-01 X 145075858 145075858 T A MIR890 RNA 0.37 TCGA-36-2547-01 X 16688749 16688749 T C CTPS2 Silent p.K381K 0.14 TCGA-36-2547-01 X 31144780 31144780 G T DMD Silent p.T3675T 0.32 TCGA-36-2547-01 X 47074275 47074275 G A UBA1 Missense_Mutation p.D1042N 0.55 deleterious(0.04) benign(0.243) TCGA-36-2547-01 X 49106803 49106803 C A CCDC22 3'UTR 0.44 TCGA-36-2547-01 X 54784956 54784956 G A ITIH6 Silent p.G517G 0.19 TCGA-36-2547-01 X 63551599 63551599 G T MTMR8 Missense_Mutation p.P397H 0.30 deleterious(0) probably_damaging(1) TCGA-36-2547-01 X 65392395 65392395 C G HEPH Silent p.P176P 0.34 TCGA-36-2547-01 X 66943649 66943649 G T AR Missense_Mutation p.G910V 0.33 deleterious(0) probably_damaging(1) TCGA-36-2547-01 X 67731781 67731781 G C YIPF6 Missense_Mutation p.D50H 0.31 deleterious(0.05) possibly_damaging(0.838) TCGA-36-2547-01 X 70148830 70148830 G A SLC7A3 Silent p.A131A 0.06 TCGA-36-2547-01 X 72804259 72804274 CCAGAAGAATTTAAAA - CHIC1 Frame_Shift_Del p.E121Afs*5 0.48 TCGA-36-2547-01 X 8503805 8503805 A G KAL1 Missense_Mutation p.S557P 0.31 deleterious(0.01) possibly_damaging(0.818) TCGA-36-2548-01 10 28229687 28229687 C T ARMC4 Silent p.S597S 0.39 TCGA-36-2548-01 10 67829111 67829111 G T CTNNA3 Missense_Mutation p.A705D 0.21 deleterious(0) unknown(0) TCGA-36-2548-01 11 118220583 118220583 A T CD3G Nonsense_Mutation p.K69* 0.54 TCGA-36-2548-01 11 12785801 12785801 G A TEAD1 Missense_Mutation p.G8S 0.72 tolerated(0.48) benign(0.021) TCGA-36-2548-01 11 12883835 12883835 A T TEAD1 Missense_Mutation p.T81S 0.05 deleterious(0.02) possibly_damaging(0.72) TCGA-36-2548-01 11 55761462 55761462 T A OR5F1 Missense_Mutation p.I214F 0.07 deleterious(0) probably_damaging(0.978) TCGA-36-2548-01 11 60687260 60687260 T G TMEM109 Missense_Mutation p.L32W 0.53 deleterious(0.04) benign(0.006) TCGA-36-2548-01 11 64112015 64112015 C T CCDC88B Nonsense_Mutation p.Q668* 0.08 TCGA-36-2548-01 12 101723078 101723078 C T UTP20 Missense_Mutation p.P1090S 0.39 deleterious(0.02) probably_damaging(1) TCGA-36-2548-01 12 122281734 122281734 C T HPD Missense_Mutation p.R279H 0.40 tolerated(0.05) benign(0.003) TCGA-36-2548-01 12 14577943 14577943 C G ATF7IP Missense_Mutation p.P365R 0.05 tolerated_low_confidence(0.05) possibly_damaging(0.904) TCGA-36-2548-01 12 54396531 54396531 G A HOXC9 3'UTR 0.31 TCGA-36-2548-01 12 81111012 81111012 C T MYF5 Missense_Mutation p.A57V 0.05 tolerated(0.12) probably_damaging(0.999) TCGA-36-2548-01 12 81242066 81242066 A G LIN7A Silent p.N79N 0.09 TCGA-36-2548-01 13 30857844 30857844 G A KATNAL1 Missense_Mutation p.S24L 0.08 deleterious(0.02) benign(0.367) TCGA-36-2548-01 13 31205140 31205140 G A USPL1 Missense_Mutation p.G133S 0.25 tolerated(0.53) benign(0.021) TCGA-36-2548-01 13 39265898 39265898 G A FREM2 Missense_Mutation p.D1473N 0.57 deleterious(0) benign(0.168) TCGA-36-2548-01 14 92076841 92076841 G C CATSPERB Missense_Mutation p.L861V 0.14 deleterious(0.03) benign(0.124) TCGA-36-2548-01 15 43525374 43525374 G A TGM5 3'UTR 0.86 TCGA-36-2548-01 15 59344631 59344631 G T RNF111 Splice_Site p.X336_splice 0.77 TCGA-36-2548-01 15 73408959 73408959 T C NEO1 Missense_Mutation p.V70A 0.91 tolerated(0.74) benign(0.015) TCGA-36-2548-01 16 57504969 57504969 C G POLR2C Missense_Mutation p.L256V 0.11 deleterious(0) probably_damaging(0.999) TCGA-36-2548-01 16 57698685 57698685 A C GPR56 3'UTR 0.10 TCGA-36-2548-01 17 15234710 15234710 C T TEKT3 Missense_Mutation p.V65M 0.44 tolerated(0.13) benign(0.004) TCGA-36-2548-01 17 38978560 38978560 C G KRT10 Missense_Mutation p.S93T 0.84 tolerated_low_confidence(0.32) unknown(0) TCGA-36-2548-01 17 67024708 67024708 T C ABCA9 Missense_Mutation p.N528S 0.81 deleterious(0.02) possibly_damaging(0.782) TCGA-36-2548-01 17 7578370 7578370 C A TP53 Splice_Site p.X187_splice 0.84 TCGA-36-2548-01 18 21033329 21033329 C A RIOK3 5'UTR 0.15 TCGA-36-2548-01 19 49472860 49472860 C A GYS1 Silent p.G633G 0.44 TCGA-36-2548-01 19 51503501 51503501 G A KLK8 Missense_Mutation p.R127C 0.42 deleterious(0.02) benign(0.337) TCGA-36-2548-01 19 58117973 58117973 T C ZNF530 Silent p.F360F 0.16 TCGA-36-2548-01 1 118039453 118039453 G T MAN1A2 Silent p.G451G 0.26 TCGA-36-2548-01 1 160098836 160098836 G A ATP1A2 Missense_Mutation p.R428H 0.06 deleterious(0.03) benign(0.118) TCGA-36-2548-01 1 16258718 16258718 C T SPEN Missense_Mutation p.P1995S 0.67 benign(0.006) TCGA-36-2548-01 1 186281274 186281274 T C TPR 3'UTR 0.24 TCGA-36-2548-01 1 200978545 200978545 G A KIF21B Missense_Mutation p.P38L 0.24 deleterious(0) probably_damaging(0.997) TCGA-36-2548-01 1 231472153 231472153 G A EXOC8 Missense_Mutation p.R447C 0.25 deleterious(0) probably_damaging(0.927) TCGA-36-2548-01 1 33990501 33990501 G A CSMD2 Silent p.G3315G 0.21 TCGA-36-2548-01 1 36938155 36938155 C T CSF3R Missense_Mutation p.R269H 0.62 deleterious(0.03) probably_damaging(0.98) TCGA-36-2548-01 20 2597941 2597941 G A TMC2 Missense_Mutation p.D722N 0.22 tolerated(0.29) probably_damaging(0.925) TCGA-36-2548-01 20 33328515 33328519 CTGCA - NCOA6 Frame_Shift_Del p.A1848Wfs*4 0.10 TCGA-36-2548-01 21 30458145 30458145 C T MAP3K7CL 5'UTR 0.04 TCGA-36-2548-01 21 45707401 45707401 C A AIRE Silent p.G155G 0.07 TCGA-36-2548-01 22 22277487 22277487 G A PPM1F Missense_Mutation p.T448I 0.77 tolerated_low_confidence(0.15) benign(0.01) TCGA-36-2548-01 22 30737781 30737781 T G SF3A1 Missense_Mutation p.E324A 0.04 deleterious(0.01) probably_damaging(0.982) TCGA-36-2548-01 22 31600476 31600476 T A RNF185 Silent p.A161A 0.10 TCGA-36-2548-01 2 114476795 114476795 C T SLC35F5 Missense_Mutation p.D478N 0.20 tolerated(0.07) probably_damaging(0.918) TCGA-36-2548-01 2 131117022 131117022 C A PTPN18 Missense_Mutation p.T111N 0.31 deleterious(0) probably_damaging(0.995) TCGA-36-2548-01 2 159214994 159214994 T A CCDC148 Silent p.A38A 0.05 TCGA-36-2548-01 2 74607176 74607176 G C DCTN1 5'UTR 0.15 TCGA-36-2548-01 2 79314029 79314029 T C REG1B Missense_Mutation p.N31S 0.09 tolerated(1) benign(0) TCGA-36-2548-01 2 99013338 99013338 C T CNGA3 Missense_Mutation p.R569C 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-36-2548-01 3 167525120 167525120 G - SERPINI1 Frame_Shift_Del p.G324Afs*19 0.30 TCGA-36-2548-01 3 196612859 196612859 G A SENP5 Silent p.Q269Q 0.05 TCGA-36-2548-01 4 164272349 164272349 C T NPY5R Silent p.H308H 0.79 TCGA-36-2548-01 5 169810802 169810802 G A KCNMB1 Nonsense_Mutation p.Q63* 0.41 TCGA-36-2548-01 5 169810806 169810806 C T KCNMB1 Silent p.R61R 0.41 TCGA-36-2548-01 5 64966090 64966090 C T SGTB Missense_Mutation p.A300T 0.90 tolerated_low_confidence(0.47) benign(0.001) TCGA-36-2548-01 6 38820486 38820486 T A DNAH8 Missense_Mutation p.V1611E 0.07 possibly_damaging(0.903) TCGA-36-2548-01 7 121668653 121668653 C G PTPRZ1 Missense_Mutation p.P1679R 0.16 deleterious(0) possibly_damaging(0.884) TCGA-36-2548-01 7 135312722 135312723 AT - NUP205 Frame_Shift_Del p.M1599Vfs*35 0.20 TCGA-36-2548-01 7 81359096 81359096 C A HGF Splice_Site p.X289_splice 0.06 TCGA-36-2548-01 7 87514430 87514430 C A DBF4 Missense_Mutation p.P119H 0.59 deleterious(0) probably_damaging(0.998) TCGA-36-2548-01 7 92078169 92078169 G A GATAD1 Missense_Mutation p.R118K 0.16 deleterious(0) probably_damaging(0.994) TCGA-36-2548-01 8 110287655 110287655 C T NUDCD1 Missense_Mutation p.G367R 0.04 deleterious(0) probably_damaging(0.997) TCGA-36-2548-01 8 145735156 145735156 C T MFSD3 Missense_Mutation p.A147V 0.17 deleterious(0.01) possibly_damaging(0.805) TCGA-36-2548-01 8 2000387 2000387 G T MYOM2 Missense_Mutation p.K73N 0.38 tolerated(0.18) benign(0.147) TCGA-36-2548-01 8 37964644 37964644 A T ASH2L Missense_Mutation p.T121S 0.08 tolerated(0.44) benign(0.001) TCGA-36-2548-01 9 103035328 103035328 A T INVS Missense_Mutation p.H585L 0.03 deleterious(0) probably_damaging(0.999) TCGA-36-2548-01 9 130489348 130489348 G C TTC16 Missense_Mutation p.V509L 0.14 tolerated(0.6) benign(0.002) TCGA-36-2548-01 9 130579302 130579302 G T ENG Intron 0.34 TCGA-36-2548-01 X 101098102 101098102 T G NXF5 5'UTR 0.22 TCGA-36-2548-01 X 111078157 111078157 G T TRPC5 Missense_Mutation p.L630I 0.23 tolerated(0.45) possibly_damaging(0.573) TCGA-36-2548-01 X 142718596 142718596 T C SLITRK4 Missense_Mutation p.K110R 0.42 tolerated(0.33) probably_damaging(0.98) TCGA-36-2548-01 X 53989292 53989292 G T PHF8 Missense_Mutation p.P878T 0.15 deleterious(0.04) probably_damaging(0.998) TCGA-36-2551-01 10 79576407 79576407 G A DLG5 Silent p.I1309I 0.36 TCGA-36-2551-01 10 81070809 81070809 G A ZMIZ1 Silent p.Q988Q 0.32 TCGA-36-2551-01 11 123777489 123777489 C T OR8D4 Silent p.A117A 0.02 TCGA-36-2551-01 11 60899428 60899428 T C VPS37C Missense_Mutation p.Y311C 0.20 deleterious(0) probably_damaging(0.998) TCGA-36-2551-01 12 14976320 14976320 C G C12orf60 Missense_Mutation p.L151V 0.10 deleterious(0) probably_damaging(0.997) TCGA-36-2551-01 13 52035089 52035089 A G RPS4XP16 RNA 0.21 TCGA-36-2551-01 14 73554800 73554800 C T RBM25 Silent p.L158L 0.20 TCGA-36-2551-01 16 31089129 31089129 C T ZNF646 Missense_Mutation p.S495L 0.30 deleterious(0) probably_damaging(0.991) TCGA-36-2551-01 16 418370 418370 C T MRPL28 Silent p.T207T 0.64 TCGA-36-2551-01 16 50707906 50707906 G A SNX20 Missense_Mutation p.A121V 0.19 deleterious(0.04) benign(0.046) TCGA-36-2551-01 17 7578268 7578268 A C TP53 Missense_Mutation p.L194R 0.83 deleterious(0) probably_damaging(1) TCGA-36-2551-01 18 45394716 45394716 C T SMAD2 Silent p.E211E 0.34 TCGA-36-2551-01 19 10939824 10939824 G A DNM2 Missense_Mutation p.R724H 0.29 deleterious(0.04) probably_damaging(0.954) TCGA-36-2551-01 19 36509905 36509905 T A CLIP3 Missense_Mutation p.I360F 0.15 deleterious(0) probably_damaging(0.998) TCGA-36-2551-01 19 36674234 36674234 G A ZNF565 Nonsense_Mutation p.Q212* 0.09 TCGA-36-2551-01 19 44065143 44065143 C T XRCC1 Silent p.V58V 0.20 TCGA-36-2551-01 19 49316751 49316751 C G HSD17B14 Missense_Mutation p.D201H 0.19 deleterious(0.01) possibly_damaging(0.786) TCGA-36-2551-01 19 5711914 5711914 C T LONP1 Silent p.A246A 0.27 TCGA-36-2551-01 19 58966712 58966712 G C ZNF324B Missense_Mutation p.R134T 0.08 deleterious(0.03) possibly_damaging(0.611) TCGA-36-2551-01 1 115130079 115130079 C T DENND2C Missense_Mutation p.R895Q 0.35 deleterious(0) probably_damaging(0.991) TCGA-36-2551-01 1 115220097 115220097 A T AMPD1 Missense_Mutation p.H454Q 0.18 tolerated(0.24) possibly_damaging(0.864) TCGA-36-2551-01 1 120165701 120165701 G A ZNF697 Missense_Mutation p.S422L 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-36-2551-01 1 12921385 12921385 C T PRAMEF2 Silent p.D392D 0.07 TCGA-36-2551-01 1 1430897 1430897 C T ATAD3B Silent p.L549L 0.43 TCGA-36-2551-01 1 16069337 16069337 C A TMEM82 Silent p.I32I 0.05 TCGA-36-2551-01 1 161196732 161196733 - CAGC TOMM40L Frame_Shift_Ins p.H59Qfs*35 0.24 TCGA-36-2551-01 1 16907446 16907446 A G NBPF1 Missense_Mutation p.V462A 0.03 tolerated(0.2) benign(0.389) TCGA-36-2551-01 1 205290843 205290843 G A NUAK2 5'UTR 0.36 TCGA-36-2551-01 1 211469095 211469095 G A RCOR3 Silent p.E339E 0.17 TCGA-36-2551-01 1 225695656 225695656 G T ENAH Missense_Mutation p.S512Y 0.24 deleterious(0) possibly_damaging(0.851) TCGA-36-2551-01 1 6266735 6266735 G A RNF207 Missense_Mutation p.G47D 0.19 tolerated(0.45) benign(0.013) TCGA-36-2551-01 1 70486799 70486799 C T LRRC7 Missense_Mutation p.A473V 0.10 deleterious(0.04) benign(0.212) TCGA-36-2551-01 21 33063207 33063207 T C SCAF4 Silent p.E596E 0.10 TCGA-36-2551-01 22 22293656 22293656 G A PPM1F Intron 0.29 TCGA-36-2551-01 22 38823296 38823296 G A KCNJ4 Missense_Mutation p.S281L 0.10 tolerated(0.08) benign(0.023) TCGA-36-2551-01 22 41735127 41735127 G A ZC3H7B Missense_Mutation p.D250N 0.40 tolerated(0.32) benign(0.068) TCGA-36-2551-01 2 201355033 201355033 C T KCTD18 Silent p.T357T 0.13 TCGA-36-2551-01 3 147128703 147128703 T C ZIC1 Silent p.N268N 0.15 TCGA-36-2551-01 3 149290738 149290738 G C WWTR1 Missense_Mutation p.Q161E 0.14 deleterious(0.04) possibly_damaging(0.709) TCGA-36-2551-01 3 170625460 170625460 A C EIF5A2 Missense_Mutation p.S46A 0.06 deleterious(0.02) benign(0.121) TCGA-36-2551-01 3 173996816 173996816 T A NLGN1 Missense_Mutation p.L342H 0.14 deleterious(0) probably_damaging(1) TCGA-36-2551-01 4 164061530 164061530 G A NAF1 Silent p.F241F 0.15 TCGA-36-2551-01 4 907421 907421 C G GAK Missense_Mutation p.G61R 0.18 deleterious(0) benign(0.367) TCGA-36-2551-01 5 140181289 140181289 T G PCDHA3 Silent p.T169T 0.43 TCGA-36-2551-01 6 102503202 102503202 T C GRIK2 Intron 0.22 TCGA-36-2551-01 6 30513986 30513986 A G GNL1 Missense_Mutation p.S563P 0.20 tolerated(0.25) possibly_damaging(0.763) TCGA-36-2551-01 6 46656033 46656033 G A TDRD6 Silent p.T56T 0.18 TCGA-36-2551-01 8 53028906 53028906 G A ST18 Silent p.L978L 0.18 TCGA-36-2552-01 10 105344930 105344930 G A NEURL1 Silent p.P429P 0.40 TCGA-36-2552-01 10 120920435 120920435 C A SFXN4 Missense_Mutation p.R109L 0.16 deleterious(0) probably_damaging(1) TCGA-36-2552-01 10 75107962 75107962 C T TTC18 Silent p.L127L 0.14 TCGA-36-2552-01 11 132399049 132399049 G A OPCML Silent p.D144D 0.26 TCGA-36-2552-01 11 134064590 134064590 C T NCAPD3 Silent p.E553E 0.07 TCGA-36-2552-01 11 134064592 134064592 C T NCAPD3 Missense_Mutation p.E553K 0.07 deleterious(0.01) possibly_damaging(0.694) TCGA-36-2552-01 11 134064611 134064611 C G NCAPD3 Silent p.L546L 0.09 TCGA-36-2552-01 11 134064630 134064630 C G NCAPD3 Missense_Mutation p.R540T 0.09 tolerated(0.07) benign(0.04) TCGA-36-2552-01 11 134252867 134252867 C T B3GAT1 Missense_Mutation p.V219I 0.25 deleterious(0) probably_damaging(0.999) TCGA-36-2552-01 11 5701015 5701015 T C TRIM5 Silent p.T131T 0.29 TCGA-36-2552-01 11 6653811 6653811 G A DCHS1 Missense_Mutation p.R978C 0.56 deleterious(0) probably_damaging(0.93) TCGA-36-2552-01 11 86120325 86120325 A T CCDC81 Missense_Mutation p.E379V 0.51 deleterious(0.02) possibly_damaging(0.676) TCGA-36-2552-01 12 32138288 32138289 - TCTG KIAA1551 Frame_Shift_Ins p.V1469Lfs*8 0.29 TCGA-36-2552-01 12 8077092 8077092 T C SLC2A3 Missense_Mutation p.R328G 0.07 deleterious(0) possibly_damaging(0.794) TCGA-36-2552-01 13 114107615 114107615 G A ADPRHL1 Silent p.L46L 0.16 TCGA-36-2552-01 13 77625229 77625229 A G MYCBP2 Silent p.F4570F 0.26 TCGA-36-2552-01 14 30105511 30105511 G C PRKD1 Missense_Mutation p.A392G 0.35 tolerated(0.37) benign(0.001) TCGA-36-2552-01 14 36840633 36840633 G A DPPA3P2 RNA 0.21 TCGA-36-2552-01 15 43527071 43527071 C G TGM5 Missense_Mutation p.D591H 0.33 deleterious(0) probably_damaging(0.995) TCGA-36-2552-01 15 62201317 62201317 C T VPS13C Missense_Mutation p.G2951D 0.34 deleterious(0) probably_damaging(0.977) TCGA-36-2552-01 16 1129571 1129571 G C SSTR5 Missense_Mutation p.V235L 0.04 deleterious(0.01) benign(0.294) TCGA-36-2552-01 16 22926393 22926393 G A HS3ST2 Missense_Mutation p.R205Q 0.30 deleterious(0) probably_damaging(1) TCGA-36-2552-01 16 55532304 55532304 C T MMP2 Silent p.A571A 0.47 TCGA-36-2552-01 17 45755731 45755731 T C KPNB1 Missense_Mutation p.Y769H 0.42 deleterious(0) probably_damaging(0.961) TCGA-36-2552-01 17 58258690 58258690 T C USP32 Missense_Mutation p.I1515V 0.50 tolerated(0.54) possibly_damaging(0.833) TCGA-36-2552-01 17 6348467 6348467 C A FAM64A Missense_Mutation p.R13S 0.33 tolerated(0.35) probably_damaging(0.962) TCGA-36-2552-01 17 7578275 7578275 G A TP53 Nonsense_Mutation p.Q192* 0.97 TCGA-36-2552-01 18 13884676 13884676 G C MC2R Missense_Mutation p.P281R 0.58 tolerated(0.65) possibly_damaging(0.536) TCGA-36-2552-01 18 13885598 13885598 C T MC2R 5'UTR 0.15 TCGA-36-2552-01 18 32833723 32833723 C G ZSCAN30 Missense_Mutation p.K392N 0.19 deleterious(0) probably_damaging(0.959) TCGA-36-2552-01 18 43262529 43262529 C T SLC14A2 3'UTR 0.53 TCGA-36-2552-01 19 18542826 18542826 C T SSBP4 Silent p.G194G 0.19 TCGA-36-2552-01 19 4817807 4817807 G - TICAM1 Frame_Shift_Del p.R195Dfs*59 0.33 TCGA-36-2552-01 19 50155966 50155966 G T SCAF1 Missense_Mutation p.D774Y 0.29 unknown(0) TCGA-36-2552-01 19 55349042 55349042 A C KIR2DS4 Missense_Mutation p.K28Q 0.05 deleterious_low_confidence(0) possibly_damaging(0.865) TCGA-36-2552-01 19 8160335 8160335 G C FBN3 Missense_Mutation p.C1903W 0.21 deleterious(0) probably_damaging(1) TCGA-36-2552-01 1 109242315 109242315 G C PRPF38B Missense_Mutation p.R438S 0.22 tolerated_low_confidence(0.16) unknown(0) TCGA-36-2552-01 1 149783928 149783928 C A HIST2H2BF 5'UTR 0.22 TCGA-36-2552-01 1 211545789 211545789 G T TRAF5 Silent p.L473L 0.22 TCGA-36-2552-01 1 236708109 236708109 G A LGALS8 Missense_Mutation p.R275H 0.15 deleterious(0.03) probably_damaging(0.997) TCGA-36-2552-01 1 249119035 249119035 C T SH3BP5L Missense_Mutation p.E34K 0.18 tolerated_low_confidence(0.14) possibly_damaging(0.587) TCGA-36-2552-01 1 53535708 53535708 C T PODN Missense_Mutation p.P109S 0.29 tolerated(0.13) benign(0.079) TCGA-36-2552-01 1 6191693 6191693 T A CHD5 Missense_Mutation p.N1087I 0.28 deleterious(0) probably_damaging(0.998) TCGA-36-2552-01 1 92149315 92149315 G T TGFBR3 Missense_Mutation p.S846Y 0.29 deleterious(0) unknown(0) TCGA-36-2552-01 1 92182216 92182216 C G TGFBR3 Missense_Mutation p.G539A 0.24 tolerated(0.93) benign(0.256) TCGA-36-2552-01 20 31023269 31023269 C T ASXL1 Silent p.H918H 0.24 TCGA-36-2552-01 20 7864192 7864192 A G HAO1 3'UTR 0.22 TCGA-36-2552-01 2 189863012 189863012 T C COL3A1 Silent p.G648G 0.18 TCGA-36-2552-01 2 19552014 19552014 C T OSR1 3'UTR 0.31 TCGA-36-2552-01 2 210517907 210517907 C T MAP2 Missense_Mutation p.R5W 0.16 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-36-2552-01 2 71654514 71654514 C A ZNF638 Missense_Mutation p.L1839I 0.42 tolerated(0.34) benign(0.219) TCGA-36-2552-01 2 74764017 74764017 T C LOXL3 Missense_Mutation p.H244R 0.64 tolerated(0.06) benign(0.186) TCGA-36-2552-01 3 121412987 121412987 A C GOLGB1 Missense_Mutation p.L2128R 0.11 probably_damaging(0.983) TCGA-36-2552-01 3 126291304 126291304 C A TXNRD3NB Missense_Mutation p.R28L 0.16 benign(0.433) TCGA-36-2552-01 3 15480767 15480767 C T EAF1 3'UTR 0.32 TCGA-36-2552-01 3 184039626 184039626 C T EIF4G1 Silent p.V425V 0.47 TCGA-36-2552-01 4 155720135 155720135 C G RBM46 Missense_Mutation p.A274G 0.23 deleterious(0.03) probably_damaging(0.996) TCGA-36-2552-01 4 30725361 30725361 G A PCDH7 Missense_Mutation p.D773N 0.32 deleterious(0.03) benign(0.002) TCGA-36-2552-01 4 55963933 55963933 C T KDR Missense_Mutation p.G837D 0.27 deleterious(0) probably_damaging(1) TCGA-36-2552-01 4 68501269 68501269 A T UBA6 Missense_Mutation p.L582I 0.31 deleterious(0.01) benign(0.284) TCGA-36-2552-01 4 72897572 72897572 G A NPFFR2 5'UTR 0.20 TCGA-36-2552-01 4 79860319 79860319 C T PAQR3 Nonsense_Mutation p.W20* 0.69 TCGA-36-2552-01 5 13886208 13886208 G A DNAH5 Missense_Mutation p.H870Y 0.24 benign(0.152) TCGA-36-2552-01 5 176316712 176316712 C T HK3 Missense_Mutation p.D222N 0.64 deleterious(0.02) probably_damaging(0.958) TCGA-36-2552-01 5 43613218 43613218 G T NNT Silent p.L120L 0.51 TCGA-36-2552-01 6 135287503 135287503 G A HBS1L Silent p.Y669Y 0.30 TCGA-36-2552-01 6 26638633 26638633 T C ZNF322 Missense_Mutation p.Q50R 0.12 deleterious(0.03) benign(0) TCGA-36-2552-01 6 27860929 27860929 G A HIST1H2AM 5'UTR 0.19 TCGA-36-2552-01 6 28214786 28214786 C A ZKSCAN4 Missense_Mutation p.D247Y 0.14 deleterious(0) probably_damaging(0.954) TCGA-36-2552-01 6 31604061 31604061 G A PRRC2A Silent p.Q1900Q 0.13 TCGA-36-2552-01 6 33373321 33373321 C T KIFC1 Silent p.G483G 0.17 TCGA-36-2552-01 6 46988487 46988487 C A GPR110 Silent p.S197S 0.11 TCGA-36-2552-01 6 49986696 49986696 C T DEFB110 Silent p.Q66Q 0.17 TCGA-36-2552-01 6 71464756 71464756 C G SMAP1 Missense_Mutation p.P109R 0.20 deleterious(0) probably_damaging(1) TCGA-36-2552-01 6 76572384 76572384 G T MYO6 Missense_Mutation p.D540Y 0.17 tolerated(1) unknown(0) TCGA-36-2552-01 7 107217967 107217967 G C DUS4L Missense_Mutation p.A306P 0.14 deleterious(0.04) probably_damaging(0.974) TCGA-36-2552-01 7 54612403 54612403 G A VSTM2A Silent p.S56S 0.12 TCGA-36-2552-01 7 93055784 93055784 C T CALCR Missense_Mutation p.D471N 0.54 tolerated(0.11) benign(0.006) TCGA-36-2552-01 8 144895096 144895096 G A SCRIB Silent p.D226D 0.29 TCGA-36-2552-01 8 24771918 24771918 C T NEFM Silent p.R204R 0.33 TCGA-36-2552-01 8 57026336 57026336 C G MOS Missense_Mutation p.G69A 0.35 deleterious(0) probably_damaging(1) TCGA-36-2552-01 8 88886294 88886294 A T DCAF4L2 5'UTR 0.33 TCGA-36-2552-01 X 154020058 154020058 A C MPP1 Missense_Mutation p.M104R 0.89 deleterious(0) possibly_damaging(0.811) TCGA-3P-A9WA-01 10 12212749 12212749 A C NUDT5 Missense_Mutation p.L173V 0.48 tolerated(0.35) benign(0.331) TCGA-3P-A9WA-01 10 13686101 13686101 A G FRMD4A 3'UTR 0.53 TCGA-3P-A9WA-01 10 24884668 24884668 G C ARHGAP21 Silent p.L1230L 0.13 TCGA-3P-A9WA-01 10 62701588 62701588 A G RHOBTB1 5'UTR 0.21 TCGA-3P-A9WA-01 10 8115803 8115803 G A GATA3 Silent p.E384E 0.16 TCGA-3P-A9WA-01 10 97174450 97174450 A G SORBS1 Missense_Mutation p.F204S 0.88 deleterious_low_confidence(0) possibly_damaging(0.453) TCGA-3P-A9WA-01 11 108128295 108128295 A G ATM Missense_Mutation p.M780V 0.07 tolerated(0.27) benign(0.005) TCGA-3P-A9WA-01 11 118124632 118124633 TC - MPZL2 3'UTR 0.17 TCGA-3P-A9WA-01 11 14889079 14889079 C G PDE3B Missense_Mutation p.P972A 0.72 deleterious(0.04) probably_damaging(1) TCGA-3P-A9WA-01 11 34492590 34492590 T G CAT Splice_Site p.X506_splice 0.36 TCGA-3P-A9WA-01 11 47829948 47829948 A T NUP160 Missense_Mutation p.L792Q 0.10 deleterious(0) possibly_damaging(0.718) TCGA-3P-A9WA-01 11 62284371 62284371 C A AHNAK Missense_Mutation p.G5840W 0.48 probably_damaging(1) TCGA-3P-A9WA-01 11 65113480 65113480 G C DPF2 Missense_Mutation p.K285N 0.28 deleterious(0) possibly_damaging(0.884) TCGA-3P-A9WA-01 11 68029266 68029266 T C C11orf24 Silent p.K399K 0.46 TCGA-3P-A9WA-01 11 88780845 88780845 T A GRM5 Missense_Mutation p.I66F 0.24 deleterious(0) probably_damaging(0.994) TCGA-3P-A9WA-01 11 94354209 94354209 A C PIWIL4 3'UTR 0.42 TCGA-3P-A9WA-01 11 94862082 94862082 A G ENDOD1 Missense_Mutation p.K281R 0.20 tolerated(0.25) benign(0.09) TCGA-3P-A9WA-01 11 9754126 9754126 A G SWAP70 Missense_Mutation p.K317E 0.80 tolerated(0.07) benign(0.293) TCGA-3P-A9WA-01 12 102159022 102159022 G T GNPTAB Missense_Mutation p.P558Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-3P-A9WA-01 12 121891034 121891034 G C KDM2B Missense_Mutation p.C616W 0.58 deleterious(0) probably_damaging(1) TCGA-3P-A9WA-01 12 125420295 125420295 A T RPL22P19 RNA 0.40 TCGA-3P-A9WA-01 12 21069016 21069016 G C SLCO1B3 Missense_Mutation p.K648N 0.45 deleterious(0.02) benign(0.242) TCGA-3P-A9WA-01 12 22778496 22778496 G A ETNK1 Nonsense_Mutation p.W133* 0.23 TCGA-3P-A9WA-01 12 27850479 27850479 A C REP15 3'UTR 0.42 TCGA-3P-A9WA-01 12 40692205 40692205 A T LRRK2 Missense_Mutation p.K1086I 0.10 deleterious(0.01) possibly_damaging(0.895) TCGA-3P-A9WA-01 12 49153076 49153076 G T LINC00935 Missense_Mutation p.R55I 0.11 benign(0.206) TCGA-3P-A9WA-01 12 49494210 49494210 C A LMBR1L Missense_Mutation p.V401F 0.47 deleterious(0) possibly_damaging(0.717) TCGA-3P-A9WA-01 12 49494211 49494211 C A LMBR1L Silent p.L400L 0.47 TCGA-3P-A9WA-01 12 51593637 51593637 C T POU6F1 5'UTR 0.10 TCGA-3P-A9WA-01 12 54971262 54971263 AT - PPP1R1A 3'Flank 0.34 TCGA-3P-A9WA-01 12 6981424 6981424 G C SPSB2 Missense_Mutation p.I214M 0.45 tolerated(1) possibly_damaging(0.577) TCGA-3P-A9WA-01 12 72167740 72167740 T C RAB21 Missense_Mutation p.V110A 0.39 tolerated(0.12) possibly_damaging(0.838) TCGA-3P-A9WA-01 13 103525633 103525633 G T ERCC5 Missense_Mutation p.W968C 0.80 deleterious(0) probably_damaging(0.999) TCGA-3P-A9WA-01 14 106236076 106236077 CC G IGHG3 Frame_Shift_Del p.W243Sfs*2 0.18 TCGA-3P-A9WA-01 14 24779883 24779883 T C LTB4R2 Missense_Mutation p.Y5H 0.50 tolerated(0.2) benign(0.005) TCGA-3P-A9WA-01 14 30095694 30095694 A G PRKD1 Silent p.Y598Y 0.22 TCGA-3P-A9WA-01 14 59930679 59930679 C T GPR135 Silent p.L422L 0.08 TCGA-3P-A9WA-01 14 65237713 65237713 C G SPTB Silent p.R1896R 0.53 TCGA-3P-A9WA-01 14 69392358 69392358 C T ACTN1 Missense_Mutation p.R46Q 0.25 deleterious(0.03) probably_damaging(0.995) TCGA-3P-A9WA-01 14 71577893 71577893 C T PCNX 3'UTR 0.44 TCGA-3P-A9WA-01 14 74179343 74179343 T C PNMA1 Missense_Mutation p.K334E 0.47 tolerated(0.55) benign(0.008) TCGA-3P-A9WA-01 14 74206198 74206198 C T ELMSAN1 Missense_Mutation p.G172S 0.22 tolerated_low_confidence(0.11) benign(0.242) TCGA-3P-A9WA-01 15 20490540 20490540 C A CHEK2P2 RNA 0.10 TCGA-3P-A9WA-01 15 31294915 31294915 C A TRPM1 Nonsense_Mutation p.E1347* 0.26 TCGA-3P-A9WA-01 15 34542879 34542879 G T SLC12A6 Missense_Mutation p.S515Y 0.40 deleterious(0) probably_damaging(0.992) TCGA-3P-A9WA-01 15 41988413 41988413 T C MGA Missense_Mutation p.V402A 0.38 tolerated(0.05) benign(0.405) TCGA-3P-A9WA-01 15 43324803 43324803 T A UBR1 Silent p.L739L 0.06 TCGA-3P-A9WA-01 15 44092806 44092806 C G HYPK Missense_Mutation p.R4G 0.57 tolerated_low_confidence(0.05) benign(0.011) TCGA-3P-A9WA-01 15 44944109 44944109 T C SPG11 Missense_Mutation p.N346D 0.22 tolerated(0.33) possibly_damaging(0.542) TCGA-3P-A9WA-01 15 45562466 45562466 G A SLC28A2 Missense_Mutation p.G547E 0.17 deleterious(0) probably_damaging(1) TCGA-3P-A9WA-01 15 89744980 89744980 G A ABHD2 3'UTR 0.58 TCGA-3P-A9WA-01 15 98286676 98286676 G A LINC00923 3'UTR 0.38 TCGA-3P-A9WA-01 16 28617417 28617417 C A SULT1A1 Missense_Mutation p.Q245H 0.22 deleterious(0.05) benign(0.084) TCGA-3P-A9WA-01 16 29916176 29916176 T A ASPHD1 Missense_Mutation p.L318Q 0.45 deleterious(0) probably_damaging(0.995) TCGA-3P-A9WA-01 16 4312325 4312325 C A TFAP4 Missense_Mutation p.Q118H 0.49 deleterious(0.01) possibly_damaging(0.827) TCGA-3P-A9WA-01 16 5075596 5075596 C A NAGPA Missense_Mutation p.E477D 0.35 benign(0.002) TCGA-3P-A9WA-01 16 5083912 5083912 C A NAGPA Missense_Mutation p.A2S 0.52 possibly_damaging(0.739) TCGA-3P-A9WA-01 16 53525423 53525423 T G AKTIP 3'UTR 0.60 TCGA-3P-A9WA-01 16 58568135 58568135 A G CNOT1 Silent p.D1937D 0.48 TCGA-3P-A9WA-01 16 66792677 66792677 T C CCDC79 Missense_Mutation p.I665M 0.36 tolerated(0.12) possibly_damaging(0.505) TCGA-3P-A9WA-01 16 67039257 67039257 T C CES4A Missense_Mutation p.F426L 0.62 tolerated(0.07) benign(0.067) TCGA-3P-A9WA-01 16 69339109 69339109 A T SNTB2 3'UTR 0.33 TCGA-3P-A9WA-01 17 40994928 40994928 C A PSME3 3'UTR 0.83 TCGA-3P-A9WA-01 17 42399085 42399085 G A SLC25A39 Silent p.S125S 0.86 TCGA-3P-A9WA-01 17 49375249 49375249 G T UTP18 3'UTR 0.36 TCGA-3P-A9WA-01 17 71197559 71197559 C A COG1 Missense_Mutation p.D531E 0.78 deleterious(0) probably_damaging(0.995) TCGA-3P-A9WA-01 17 71199879 71199879 A C COG1 Missense_Mutation p.M777L 0.83 tolerated(1) benign(0.002) TCGA-3P-A9WA-01 17 7360076 7360076 G C CHRNB1 3'UTR 0.90 TCGA-3P-A9WA-01 17 74288964 74288964 G C QRICH2 Missense_Mutation p.A449G 0.31 tolerated(0.11) benign(0.208) TCGA-3P-A9WA-01 17 74731665 74731665 A C SRSF2 3'UTR 0.80 TCGA-3P-A9WA-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.75 deleterious(0) probably_damaging(0.993) TCGA-3P-A9WA-01 17 79781139 79781139 T A FAM195B Missense_Mutation p.D93V 0.82 deleterious(0.03) probably_damaging(0.999) TCGA-3P-A9WA-01 18 3155046 3155046 C T MYOM1 Silent p.L514L 0.07 TCGA-3P-A9WA-01 18 55146555 55146555 C G ONECUT2 3'UTR 0.37 TCGA-3P-A9WA-01 18 63511290 63511290 T C CDH7 Silent p.N408N 0.49 TCGA-3P-A9WA-01 18 63511291 63511291 A T CDH7 Missense_Mutation p.S409C 0.52 deleterious(0.04) benign(0.071) TCGA-3P-A9WA-01 19 34845141 34845141 A C KIAA0355 3'UTR 0.20 TCGA-3P-A9WA-01 19 48018301 48018301 T A NAPA 5'UTR 0.80 TCGA-3P-A9WA-01 19 50931390 50931390 G T SPIB Missense_Mutation p.G196C 0.71 deleterious(0) probably_damaging(1) TCGA-3P-A9WA-01 19 6475336 6475336 T C DENND1C Silent p.K334K 0.81 TCGA-3P-A9WA-01 1 110577287 110577287 C A STRIP1 Missense_Mutation p.P10T 0.22 tolerated_low_confidence(0.08) possibly_damaging(0.641) TCGA-3P-A9WA-01 1 113066703 113066703 A C ST7L 3'UTR 0.50 TCGA-3P-A9WA-01 1 114641716 114641716 C T SYT6 Missense_Mutation p.R370Q 0.40 tolerated(0.08) probably_damaging(0.975) TCGA-3P-A9WA-01 1 115218504 115218504 G C AMPD1 Silent p.L536L 0.49 TCGA-3P-A9WA-01 1 152692010 152692010 C A C1orf68 Missense_Mutation p.Q5K 0.26 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-3P-A9WA-01 1 153640097 153640097 T C ILF2 Missense_Mutation p.K110E 0.45 tolerated(0.08) benign(0.443) TCGA-3P-A9WA-01 1 158450360 158450361 TC - OR10R2 Frame_Shift_Del p.L232Vfs*20 0.17 TCGA-3P-A9WA-01 1 1670492 1670492 C T SLC35E2 Silent p.A109A 0.06 TCGA-3P-A9WA-01 1 167095679 167095679 C A DUSP27 Missense_Mutation p.S437R 0.40 tolerated(0.36) benign(0.223) TCGA-3P-A9WA-01 1 178514632 178514632 T C C1ORF220 Silent p.G6G 0.47 TCGA-3P-A9WA-01 1 183111917 183111917 A G LAMC1 Missense_Mutation p.K1608E 0.47 deleterious_low_confidence(0.02) benign(0.114) TCGA-3P-A9WA-01 1 203098065 203098065 G A ADORA1 Nonsense_Mutation p.W32* 0.38 TCGA-3P-A9WA-01 1 207217519 207217519 T G YOD1 3'UTR 0.10 TCGA-3P-A9WA-01 1 21097445 21097445 A T HP1BP3 Nonsense_Mutation p.L211* 0.05 TCGA-3P-A9WA-01 1 220445756 220445756 C T RAB3GAP2 5'UTR 0.30 TCGA-3P-A9WA-01 1 24121915 24121915 A T LYPLA2 3'UTR 0.41 TCGA-3P-A9WA-01 1 243287852 243287852 T A CEP170 3'UTR 0.03 TCGA-3P-A9WA-01 1 243667939 243667940 TA - AKT3 3'UTR 0.43 TCGA-3P-A9WA-01 1 243667940 243667940 A T AKT3 3'UTR 0.28 TCGA-3P-A9WA-01 1 36645145 36645145 C A MAP7D1 Missense_Mutation p.N739K 0.39 unknown(0) TCGA-3P-A9WA-01 1 47728720 47728735 TCTGCCAGCTGGCCAC - STIL Frame_Shift_Del p.S890Kfs*3 0.12 TCGA-3P-A9WA-01 1 64100547 64100547 C T PGM1 Missense_Mutation p.P262S 0.10 tolerated(0.16) possibly_damaging(0.903) TCGA-3P-A9WA-01 1 6445674 6445674 G T ACOT7 Missense_Mutation p.S18Y 0.40 deleterious_low_confidence(0.01) benign(0.011) TCGA-3P-A9WA-01 1 76378666 76378666 A G MSH4 3'UTR 0.16 TCGA-3P-A9WA-01 1 7828050 7828050 G C CAMTA1 3'UTR 0.37 TCGA-3P-A9WA-01 1 79402035 79402035 C A ELTD1 Missense_Mutation p.M274I 0.46 tolerated(0.55) benign(0.013) TCGA-3P-A9WA-01 1 85656100 85656100 C T SYDE2 Missense_Mutation p.E361K 0.43 deleterious(0) benign(0.309) TCGA-3P-A9WA-01 1 93619971 93619971 A C TMED5 3'UTR 0.62 TCGA-3P-A9WA-01 20 16492153 16492153 C T KIF16B Missense_Mutation p.E156K 0.48 deleterious(0) probably_damaging(0.999) TCGA-3P-A9WA-01 20 47589740 47589740 C T ARFGEF2 Silent p.N528N 0.25 TCGA-3P-A9WA-01 20 48250803 48250803 A G B4GALT5 3'UTR 0.15 TCGA-3P-A9WA-01 20 61429982 61429982 T G MRGBP Missense_Mutation p.F105C 0.29 deleterious(0) probably_damaging(0.996) TCGA-3P-A9WA-01 22 36146476 36146476 T C RBFOX2 Intron 0.38 TCGA-3P-A9WA-01 22 38824074 38824074 C A KCNJ4 Missense_Mutation p.V22F 0.20 deleterious(0) probably_damaging(1) TCGA-3P-A9WA-01 22 39112061 39112061 C T GTPBP1 Nonsense_Mutation p.R152* 0.38 TCGA-3P-A9WA-01 22 41833023 41833023 C A TOB2 Silent p.V109V 0.43 TCGA-3P-A9WA-01 2 166605264 166605264 C A GALNT3 3'UTR 0.21 TCGA-3P-A9WA-01 2 169787363 169787363 G A ABCB11 Nonsense_Mutation p.Q1075* 0.31 TCGA-3P-A9WA-01 2 202900191 202900191 C A FZD7 Missense_Mutation p.T274N 0.26 deleterious(0) probably_damaging(1) TCGA-3P-A9WA-01 2 206659903 206659903 G A NRP2 3'UTR 0.67 TCGA-3P-A9WA-01 2 210685062 210685062 C A UNC80 Missense_Mutation p.L664I 0.39 probably_damaging(0.969) TCGA-3P-A9WA-01 2 24993060 24993060 C A NCOA1 3'UTR 0.41 TCGA-3P-A9WA-01 2 3502770 3502770 G A ADI1 Silent p.R168R 0.47 TCGA-3P-A9WA-01 2 61024282 61024282 C G PAPOLG Missense_Mutation p.T733S 0.55 tolerated_low_confidence(0.12) benign(0.206) TCGA-3P-A9WA-01 3 122288550 122288550 T C DTX3L Silent p.A538A 0.84 TCGA-3P-A9WA-01 3 149686247 149686247 T C PFN2 Missense_Mutation p.R75G 0.52 deleterious(0.03) probably_damaging(0.999) TCGA-3P-A9WA-01 3 153973833 153973833 A C ARHGEF26 3'UTR 0.33 TCGA-3P-A9WA-01 3 160120522 160120522 T A SMC4 Missense_Mutation p.M126K 0.13 deleterious(0) probably_damaging(0.974) TCGA-3P-A9WA-01 3 170608933 170608933 A T EIF5A2 3'UTR 0.35 TCGA-3P-A9WA-01 3 194369465 194369466 CT - LSG1 Frame_Shift_Del p.E496Gfs*2 0.19 TCGA-3P-A9WA-01 3 197510209 197510209 T C FYTTD1 3'UTR 0.28 TCGA-3P-A9WA-01 3 45557744 45557744 A T LARS2 Nonsense_Mutation p.K674* 0.28 TCGA-3P-A9WA-01 3 49718661 49718661 A C APEH Missense_Mutation p.N476T 0.12 deleterious(0.01) benign(0.429) TCGA-3P-A9WA-01 3 49836296 49836297 GT - CDHR4 Frame_Shift_Del p.T153Sfs*32 0.36 TCGA-3P-A9WA-01 3 50131151 50131154 AGAG - RBM5 Splice_Site p.X62_splice 0.13 TCGA-3P-A9WA-01 3 50356462 50356462 A G HYAL2 Silent p.S312S 0.42 TCGA-3P-A9WA-01 3 52485187 52485187 G A TNNC1 3'UTR 0.22 TCGA-3P-A9WA-01 3 52938814 52938814 A T SFMBT1 3'UTR 0.51 TCGA-3P-A9WA-01 3 53321289 53321289 T G DCP1A 3'UTR 0.48 TCGA-3P-A9WA-01 3 57107798 57107798 T C SPATA12 Missense_Mutation p.S26P 0.45 deleterious_low_confidence(0) possibly_damaging(0.82) TCGA-3P-A9WA-01 3 57658128 57658129 TC - DENND6A Frame_Shift_Del p.E92Kfs*25 0.21 TCGA-3P-A9WA-01 3 68788233 68788233 G C FAM19A4 Missense_Mutation p.T135S 0.16 deleterious(0) probably_damaging(1) TCGA-3P-A9WA-01 3 75786398 75786398 C G ZNF717 Missense_Mutation p.R792S 0.40 deleterious(0.02) benign(0.069) TCGA-3P-A9WA-01 3 99513852 99513852 G A COL8A1 Silent p.G369G 0.11 TCGA-3P-A9WA-01 4 110687924 110687924 A C CFI Nonsense_Mutation p.Y38* 0.68 TCGA-3P-A9WA-01 4 123160823 123160823 A G KIAA1109 Missense_Mutation p.Y1329C 0.90 possibly_damaging(0.784) TCGA-3P-A9WA-01 4 166418852 166418852 T C CPE 3'UTR 0.76 TCGA-3P-A9WA-01 4 184207189 184207189 C T WWC2 Missense_Mutation p.R1040C 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-3P-A9WA-01 5 137087549 137087549 A C HNRNPA0 3'UTR 0.36 TCGA-3P-A9WA-01 5 137524642 137524643 AA - CDC23 3'UTR 0.33 TCGA-3P-A9WA-01 5 140767959 140767959 T G PCDHGB4 Missense_Mutation p.Y170D 0.18 deleterious(0) probably_damaging(1) TCGA-3P-A9WA-01 5 159833601 159833601 A T SLU7 Silent p.A387A 0.79 TCGA-3P-A9WA-01 5 178339608 178339608 G A ZFP2 5'UTR 0.27 TCGA-3P-A9WA-01 5 179662944 179662944 T C MAPK9 3'UTR 0.81 TCGA-3P-A9WA-01 6 139694725 139694725 G A CITED2 Silent p.L119L 0.35 TCGA-3P-A9WA-01 6 147067132 147067132 C A ADGB Silent p.L1084L 0.20 TCGA-3P-A9WA-01 6 163736321 163736321 T C PACRG 3'UTR 0.92 TCGA-3P-A9WA-01 6 30545215 30545217 AAG - ABCF1 In_Frame_Del p.K36del 0.46 TCGA-3P-A9WA-01 6 42897222 42897222 T - CNPY3 5'UTR 0.50 TCGA-3P-A9WA-01 6 43495369 43495369 T C XPO5 Intron 0.44 TCGA-3P-A9WA-01 7 100092102 100092102 G A NYAP1 3'UTR 0.48 TCGA-3P-A9WA-01 7 100679982 100679982 T A MUC17 Missense_Mutation p.L1762H 0.42 possibly_damaging(0.862) TCGA-3P-A9WA-01 7 121942184 121942184 G C FEZF1 Missense_Mutation p.T432R 0.14 tolerated(0.08) unknown(0) TCGA-3P-A9WA-01 7 128034995 128034995 C T IMPDH1 Missense_Mutation p.G500S 0.11 deleterious(0.01) probably_damaging(0.955) TCGA-3P-A9WA-01 7 142460381 142460381 G C PRSS1 Missense_Mutation p.C185S 0.28 deleterious(0.01) probably_damaging(0.933) TCGA-3P-A9WA-01 7 148895505 148895505 C T ZNF282 Silent p.P82P 0.43 TCGA-3P-A9WA-01 7 149545067 149545067 C G ZNF862 Missense_Mutation p.S162C 0.32 tolerated_low_confidence(0.1) benign(0.007) TCGA-3P-A9WA-01 7 15651942 15651942 A C MEOX2 3'UTR 0.07 TCGA-3P-A9WA-01 7 44146310 44146310 A T AEBP1 Missense_Mutation p.K140M 0.49 deleterious_low_confidence(0) unknown(0) TCGA-3P-A9WA-01 7 6791060 6791060 G A RSPH10B2 5'Flank 0.34 TCGA-3P-A9WA-01 7 73753031 73753031 C T CLIP2 Silent p.G125G 0.52 TCGA-3P-A9WA-01 8 101145741 101145742 CA - FBXO43 3'UTR 0.21 TCGA-3P-A9WA-01 8 65509439 65509440 GG - CYP7B1 Frame_Shift_Del p.T427Ifs*44 0.18 TCGA-3P-A9WA-01 8 85095892 85095892 G T RALYL 5'Flank 0.29 TCGA-3P-A9WA-01 8 98827626 98827626 C A LAPTM4B Nonsense_Mutation p.Y185* 0.40 TCGA-3P-A9WA-01 9 131492186 131492186 G C ZER1 3'UTR 0.32 TCGA-3P-A9WA-01 9 133967082 133967082 T C LAMC3 Missense_Mutation p.F1546L 0.24 tolerated(0.11) benign(0.022) TCGA-3P-A9WA-01 9 135277022 135277022 G A TTF1 Missense_Mutation p.S396F 0.59 tolerated(0.08) possibly_damaging(0.713) TCGA-3P-A9WA-01 9 136536656 136536656 C A SARDH Splice_Site p.X776_splice 0.18 TCGA-3P-A9WA-01 9 136915495 136915495 C T BRD3 Splice_Site p.X238_splice 0.41 TCGA-3P-A9WA-01 9 138438019 138438019 C T OBP2A 5'UTR 0.44 TCGA-3P-A9WA-01 9 140176309 140176309 A G TOR4A 3'UTR 0.62 TCGA-3P-A9WA-01 9 140176409 140176412 AGAG - TOR4A 3'UTR 0.33 TCGA-3P-A9WA-01 9 22008833 22008833 G C CDKN2B Silent p.P40P 0.36 TCGA-3P-A9WA-01 9 37126560 37126560 T G ZCCHC7 Silent p.L77L 0.19 TCGA-3P-A9WA-01 9 86618112 86618112 C G RMI1 3'UTR 0.33 TCGA-3P-A9WA-01 9 99252535 99252535 G A HABP4 3'UTR 0.59 TCGA-3P-A9WA-01 X 100117739 100117739 G T NOX1 Silent p.S136S 0.49 TCGA-3P-A9WA-01 X 100387222 100387222 C A CENPI Missense_Mutation p.P444H 0.43 deleterious(0) possibly_damaging(0.497) TCGA-3P-A9WA-01 X 114537960 114537960 A C LUZP4 Missense_Mutation p.N107H 0.42 deleterious(0) probably_damaging(0.972) TCGA-3P-A9WA-01 X 117814593 117814593 C G DOCK11 Missense_Mutation p.T1870S 0.40 deleterious(0) probably_damaging(0.997) TCGA-3P-A9WA-01 X 125684960 125684960 T C DCAF12L1 3'UTR 0.33 TCGA-3P-A9WA-01 X 129394415 129394415 G C ZNF280C Missense_Mutation p.D3E 0.40 deleterious_low_confidence(0.02) benign(0.337) TCGA-3P-A9WA-01 X 12940054 12940054 G A TLR8 Silent p.Q965Q 0.15 TCGA-3P-A9WA-01 X 136648657 136648657 C G ZIC3 5'UTR 0.38 TCGA-3P-A9WA-01 X 138643927 138643927 C A F9 Missense_Mutation p.H361Q 0.50 tolerated(0.32) benign(0.031) TCGA-3P-A9WA-01 X 153049639 153049639 G C SRPK3 Missense_Mutation p.R373P 0.48 tolerated(0.27) possibly_damaging(0.453) TCGA-3P-A9WA-01 X 153599266 153599266 G T FLNA Silent p.R116R 0.17 TCGA-3P-A9WA-01 X 31139097 31139097 G T DMD 3'UTR 0.49 TCGA-3P-A9WA-01 X 34962555 34962555 C T FAM47B Missense_Mutation p.P536L 0.44 tolerated(0.14) benign(0.325) TCGA-3P-A9WA-01 X 38146231 38146231 C A RPGR Missense_Mutation p.R674M 0.33 benign(0.001) TCGA-3P-A9WA-01 X 48214104 48214104 C T SSX3 Silent p.V49V 0.41 TCGA-3P-A9WA-01 X 71872466 71872466 G T PHKA1 Missense_Mutation p.D391E 0.32 tolerated(0.4) benign(0.038) TCGA-3P-A9WA-01 X 83128135 83128135 C A CYLC1 Missense_Mutation p.T140K 0.40 tolerated(0.1) probably_damaging(0.978) TCGA-42-2582-01 10 101964894 101964904 GCACTGCTTCA - CHUK Frame_Shift_Del p.E429Lfs*10 0.30 TCGA-42-2582-01 10 103348008 103348008 C A DPCD 5'Flank 0.41 TCGA-42-2582-01 10 120917401 120917401 G A SFXN4 Silent p.I151I 0.10 TCGA-42-2582-01 10 54076367 54076401 TGTGCTAGACACTTCTGGTCCAAGATCTGTAAACC - DKK1 Frame_Shift_Del p.A202Pfs*11 0.22 TCGA-42-2582-01 10 76863744 76863744 C A DUSP13 Intron 0.27 TCGA-42-2582-01 11 111365973 111365973 C A BTG4 Missense_Mutation p.G193C 0.06 deleterious(0) probably_damaging(0.977) TCGA-42-2582-01 11 123847840 123847840 G C OR10S1 Missense_Mutation p.H187D 0.34 deleterious(0.03) benign(0.325) TCGA-42-2582-01 11 22833406 22833406 T G GAS2 Nonsense_Mutation p.Y262* 0.07 TCGA-42-2582-01 11 5625910 5625910 C T TRIM6 Intron 0.10 TCGA-42-2582-01 11 57097599 57097599 G C SSRP1 Missense_Mutation p.N483K 0.29 tolerated(0.33) benign(0.005) TCGA-42-2582-01 11 61959643 61959643 A C SCGB1D1 Silent p.A57A 0.29 TCGA-42-2582-01 11 62766517 62766517 C G SLC22A8 Missense_Mutation p.A213P 0.28 deleterious(0.01) possibly_damaging(0.609) TCGA-42-2582-01 11 64037615 64037615 G A BAD 3'UTR 0.31 TCGA-42-2582-01 11 68701360 68701360 G A IGHMBP2 Missense_Mutation p.E506K 0.33 deleterious(0) possibly_damaging(0.783) TCGA-42-2582-01 12 108930543 108930543 T C SART3 Missense_Mutation p.E443G 0.13 deleterious(0) probably_damaging(0.928) TCGA-42-2582-01 12 20769280 20769280 C T PDE3A Silent p.R462R 0.35 TCGA-42-2582-01 12 21331541 21331541 G T SLCO1B1 Missense_Mutation p.W171C 0.27 deleterious(0) probably_damaging(1) TCGA-42-2582-01 12 55945013 55945013 G A OR6C4 Translation_Start_Site p.M1? 0.31 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-42-2582-01 12 70206746 70206746 C G RAB3IP Missense_Mutation p.I427M 0.26 deleterious(0) probably_damaging(0.999) TCGA-42-2582-01 13 50589816 50589816 G T KCNRG Missense_Mutation p.D63Y 0.13 deleterious(0) probably_damaging(0.994) TCGA-42-2582-01 14 102689222 102689222 G A WDR20 3'UTR 0.10 TCGA-42-2582-01 14 103410775 103410775 A C CDC42BPB Silent p.A1287A 0.37 TCGA-42-2582-01 14 105212718 105212718 C T ADSSL1 Silent p.V482V 0.30 TCGA-42-2582-01 14 23818562 23818562 C A SLC22A17 Missense_Mutation p.G149C 0.36 tolerated(0.06) probably_damaging(0.989) TCGA-42-2582-01 15 37390358 37390358 C G MEIS2 Missense_Mutation p.V19L 0.38 tolerated_low_confidence(0.74) benign(0.001) TCGA-42-2582-01 15 42565619 42565619 C T TMEM87A 5'UTR 0.25 TCGA-42-2582-01 15 44624251 44624251 C G CASC4 Missense_Mutation p.A184G 0.29 tolerated(0.21) possibly_damaging(0.547) TCGA-42-2582-01 15 45047102 45047102 C A TRIM69 Missense_Mutation p.S4Y 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.529) TCGA-42-2582-01 15 50769603 50769603 G A USP8 Silent p.L375L 0.27 TCGA-42-2582-01 16 20334200 20334200 T C GP2 Missense_Mutation p.N216D 0.09 deleterious(0.05) benign(0.026) TCGA-42-2582-01 16 30002839 30002839 A T TAOK2 3'Flank 0.34 TCGA-42-2582-01 16 30666310 30666310 C A PRR14 Missense_Mutation p.P340H 0.34 deleterious(0) probably_damaging(0.938) TCGA-42-2582-01 16 84270316 84270316 T A KCNG4 Intron 0.31 TCGA-42-2582-01 17 11622712 11622712 G T DNAH9 Missense_Mutation p.A1872S 0.36 probably_damaging(0.918) TCGA-42-2582-01 17 11622727 11622727 A C DNAH9 Missense_Mutation p.T1877P 0.40 probably_damaging(1) TCGA-42-2582-01 17 17125919 17125919 G C FLCN Silent p.A225A 0.04 TCGA-42-2582-01 17 26864140 26864141 CT - FOXN1 Frame_Shift_Del p.L545Vfs*7 0.39 TCGA-42-2582-01 17 47904077 47904077 G A KAT7 Silent p.V550V 0.06 TCGA-42-2582-01 17 65026969 65026969 C T CACNG4 Missense_Mutation p.T278M 0.05 deleterious(0) probably_damaging(0.953) TCGA-42-2582-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.44 tolerated(0.13) possibly_damaging(0.631) TCGA-42-2582-01 17 7578275 7578277 GAG - TP53 In_Frame_Del p.P191del 0.13 TCGA-42-2582-01 18 10672824 10672824 T G PIEZO2 Silent p.T2623T 0.05 TCGA-42-2582-01 18 19762737 19762737 T C GATA6 Missense_Mutation p.M483T 0.33 deleterious(0) probably_damaging(0.961) TCGA-42-2582-01 18 52262336 52262336 T A DYNAP Splice_Site p.X100_splice 0.32 TCGA-42-2582-01 19 10565567 10565567 G C PDE4A Missense_Mutation p.Q282H 0.14 deleterious(0) benign(0.086) TCGA-42-2582-01 19 12986952 12986952 A C DNASE2 Missense_Mutation p.M312R 0.15 deleterious(0) probably_damaging(0.974) TCGA-42-2582-01 19 39881625 39881625 C T PAF1 5'UTR 0.12 TCGA-42-2582-01 19 43375948 43375948 C T PSG1 Missense_Mutation p.R227H 0.41 tolerated(0.12) benign(0.031) TCGA-42-2582-01 19 44223744 44223744 G A IRGC Missense_Mutation p.R345Q 0.08 tolerated(0.17) possibly_damaging(0.878) TCGA-42-2582-01 19 45260367 45260367 G A BCL3 Missense_Mutation p.G205S 0.41 deleterious(0) probably_damaging(1) TCGA-42-2582-01 19 54172420 54172420 C T MIR512-2 RNA 0.29 TCGA-42-2582-01 19 56413556 56413556 C G NLRP13 Missense_Mutation p.Q878H 0.14 tolerated(0.52) probably_damaging(0.942) TCGA-42-2582-01 19 5844007 5844007 C T FUT3 Missense_Mutation p.E282K 0.37 deleterious(0) probably_damaging(1) TCGA-42-2582-01 19 7711161 7711161 G T STXBP2 Missense_Mutation p.E461D 0.16 tolerated(0.53) benign(0.009) TCGA-42-2582-01 1 101194683 101194683 A T VCAM1 Missense_Mutation p.I317F 0.05 tolerated(0.12) possibly_damaging(0.905) TCGA-42-2582-01 1 114439155 114439155 A T AP4B1 Intron 0.07 TCGA-42-2582-01 1 145581539 145581539 C T PIAS3 Missense_Mutation p.P374S 0.08 tolerated(0.07) probably_damaging(0.993) TCGA-42-2582-01 1 145586876 145586876 A G NUDT17 Missense_Mutation p.M271T 0.09 tolerated(1) benign(0) TCGA-42-2582-01 1 15793896 15793896 C A CELA2A Missense_Mutation p.P219T 0.16 deleterious(0) probably_damaging(1) TCGA-42-2582-01 1 161197480 161197480 G T TOMM40L Missense_Mutation p.V111F 0.25 tolerated(0.25) benign(0.018) TCGA-42-2582-01 1 177250398 177250398 G A BRINP2 Missense_Mutation p.A696T 0.10 deleterious(0.03) benign(0.115) TCGA-42-2582-01 1 180601231 180601231 G A XPR1 5'UTR 0.20 TCGA-42-2582-01 1 205116560 205116560 G C DSTYK 3'UTR 0.13 TCGA-42-2582-01 1 210006589 210006589 T G DIEXF Missense_Mutation p.S150A 0.35 tolerated(0.39) benign(0.021) TCGA-42-2582-01 1 212553331 212553331 G C TMEM206 Missense_Mutation p.L243V 0.30 tolerated(0.23) benign(0.046) TCGA-42-2582-01 1 22005802 22005802 G A USP48 3'UTR 0.28 TCGA-42-2582-01 1 236306111 236306111 G C GPR137B Missense_Mutation p.Q63H 0.19 deleterious(0) probably_damaging(0.985) TCGA-42-2582-01 1 24671394 24671394 C G GRHL3 Missense_Mutation p.P476R 0.29 tolerated(0.37) benign(0.11) TCGA-42-2582-01 1 247588066 247588066 G A NLRP3 Missense_Mutation p.A441T 0.08 tolerated(0.06) possibly_damaging(0.79) TCGA-42-2582-01 1 33790577 33790577 G C PHC2 Missense_Mutation p.D822E 0.13 deleterious(0) probably_damaging(1) TCGA-42-2582-01 1 47162270 47162270 C A EFCAB14 Missense_Mutation p.A178S 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-42-2582-01 1 65877036 65877036 T C DNAJC6 Missense_Mutation p.M913T 0.02 deleterious(0) probably_damaging(0.984) TCGA-42-2582-01 1 67266930 67266930 G C INSL5 5'UTR 0.06 TCGA-42-2582-01 1 8075377 8075377 T C ERRFI1 Missense_Mutation p.I65V 0.04 tolerated(0.67) benign(0.01) TCGA-42-2582-01 1 8404039 8404039 A T SLC45A1 Missense_Mutation p.D738V 0.34 tolerated(0.18) benign(0.002) TCGA-42-2582-01 1 86904779 86904779 A G CLCA2 Missense_Mutation p.K398R 0.04 tolerated(0.28) benign(0.015) TCGA-42-2582-01 20 17341264 17341264 A T PCSK2 Missense_Mutation p.T162S 0.03 deleterious(0.03) probably_damaging(0.959) TCGA-42-2582-01 20 3211161 3211161 C A SLC4A11 Missense_Mutation p.R515M 0.44 deleterious(0) probably_damaging(0.998) TCGA-42-2582-01 20 36640088 36640088 G C TTI1 Missense_Mutation p.L711V 0.31 tolerated(0.51) benign(0.025) TCGA-42-2582-01 20 42208615 42208615 G C SGK2 Missense_Mutation p.E345Q 0.03 deleterious(0.01) possibly_damaging(0.552) TCGA-42-2582-01 21 33038773 33038773 G C SOD1 Missense_Mutation p.A61P 0.29 deleterious(0) probably_damaging(0.997) TCGA-42-2582-01 22 17590378 17590378 G A IL17RA Missense_Mutation p.E757K 0.31 deleterious(0.04) benign(0.036) TCGA-42-2582-01 22 24577545 24577545 G A SUSD2 Missense_Mutation p.G20S 0.12 tolerated_low_confidence(0.18) unknown(0) TCGA-42-2582-01 22 32625288 32625288 C T SLC5A4 Missense_Mutation p.M391I 0.09 deleterious(0.04) benign(0.007) TCGA-42-2582-01 2 112733038 112733038 C T MERTK Missense_Mutation p.T378M 0.35 deleterious(0) probably_damaging(0.996) TCGA-42-2582-01 2 1481091 1481091 C T TPO Silent p.R351R 0.23 TCGA-42-2582-01 2 170044485 170044485 C G LRP2 Missense_Mutation p.G3108A 0.06 benign(0.436) TCGA-42-2582-01 2 175983049 175983049 C T ATF2 Missense_Mutation p.G83D 0.25 deleterious(0) benign(0.024) TCGA-42-2582-01 2 188245195 188245195 T A CALCRL Missense_Mutation p.K136M 0.31 tolerated(0.09) benign(0.024) TCGA-42-2582-01 2 204292061 204292061 C T ABI2 Missense_Mutation p.H472Y 0.27 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-42-2582-01 2 211019041 211019041 A G KANSL1L Missense_Mutation p.L89S 0.12 deleterious(0) possibly_damaging(0.908) TCGA-42-2582-01 2 219679138 219679138 T C CYP27A1 Missense_Mutation p.I407T 0.32 tolerated(0.11) benign(0.035) TCGA-42-2582-01 2 219878017 219878017 G A CCDC108 Silent p.I1307I 0.30 TCGA-42-2582-01 2 240098122 240098124 CTC - HDAC4 In_Frame_Del p.E159del 0.64 TCGA-42-2582-01 2 242162677 242162677 G C ANO7 Missense_Mutation p.V854L 0.11 deleterious(0.01) probably_damaging(0.927) TCGA-42-2582-01 2 242573315 242573315 T G THAP4 Missense_Mutation p.H86P 0.25 tolerated_low_confidence(0.09) probably_damaging(0.939) TCGA-42-2582-01 2 27375665 27375665 C A TCF23 Missense_Mutation p.S192Y 0.31 deleterious(0.01) benign(0.133) TCGA-42-2582-01 2 38407991 38407991 G C CYP1B1-AS1 RNA 0.05 TCGA-42-2582-01 2 42490350 42490350 A G EML4 Missense_Mutation p.H182R 0.34 tolerated(0.52) benign(0.001) TCGA-42-2582-01 2 61175193 61175193 T G PUS10 Missense_Mutation p.K479T 0.39 tolerated(0.21) benign(0.09) TCGA-42-2582-01 2 96798404 96798404 G A ASTL Missense_Mutation p.T171M 0.04 tolerated(0.24) possibly_damaging(0.553) TCGA-42-2582-01 3 10345775 10345775 C G SEC13 Missense_Mutation p.V264L 0.22 tolerated(0.06) possibly_damaging(0.451) TCGA-42-2582-01 3 122274676 122274676 C G PARP9 Silent p.L149L 0.05 TCGA-42-2582-01 3 154834270 154834270 G A MME Missense_Mutation p.V121I 0.26 tolerated(0.06) probably_damaging(0.968) TCGA-42-2582-01 3 170078429 170078429 C G SKIL Missense_Mutation p.P104A 0.38 deleterious(0) probably_damaging(0.999) TCGA-42-2582-01 3 178960842 178960842 C T KCNMB3 Missense_Mutation p.M230I 0.06 deleterious(0) possibly_damaging(0.844) TCGA-42-2582-01 3 180321112 180321112 G T TTC14 Splice_Site p.X162_splice 0.33 TCGA-42-2582-01 3 182946086 182946086 C A MCF2L2 Missense_Mutation p.R705I 0.04 deleterious(0) probably_damaging(0.997) TCGA-42-2582-01 3 182987851 182987851 C T B3GNT5 Missense_Mutation p.L89F 0.04 tolerated(0.76) benign(0.405) TCGA-42-2582-01 3 184428929 184428929 C T MAGEF1 Silent p.R227R 0.13 TCGA-42-2582-01 3 197238679 197238679 C G BDH1 3'UTR 0.08 TCGA-42-2582-01 3 42680198 42680198 A G NKTR Missense_Mutation p.K1001R 0.26 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-42-2582-01 3 52014934 52014934 A T ABHD14A Missense_Mutation p.H239L 0.37 deleterious(0.03) probably_damaging(0.971) TCGA-42-2582-01 4 169602534 169602534 C G PALLD Missense_Mutation p.A380G 0.22 tolerated(0.16) benign(0.038) TCGA-42-2582-01 4 46976321 46976321 C A GABRA4 Nonsense_Mutation p.E217* 0.26 TCGA-42-2582-01 4 70826669 70826669 T G CSN2 Silent p.A15A 0.36 TCGA-42-2582-01 4 853447 853447 G A GAK Missense_Mutation p.S1077F 0.05 deleterious(0.02) possibly_damaging(0.823) TCGA-42-2582-01 5 137771377 137771377 G A KDM3B Silent p.L1758L 0.29 TCGA-42-2582-01 5 141325139 141325139 A C PCDH12 Missense_Mutation p.L1121R 0.08 deleterious(0) probably_damaging(0.999) TCGA-42-2582-01 5 35871304 35871304 A T IL7R Missense_Mutation p.N176Y 0.09 deleterious(0.04) benign(0.36) TCGA-42-2582-01 6 132189257 132189257 T C ENPP1 Missense_Mutation p.S422P 0.05 deleterious(0) probably_damaging(0.991) TCGA-42-2582-01 6 76550376 76550376 G T MYO6 Missense_Mutation p.V210L 0.11 deleterious(0.03) unknown(0) TCGA-42-2582-01 6 76550377 76550377 T C MYO6 Missense_Mutation p.V210A 0.10 deleterious(0) unknown(0) TCGA-42-2582-01 6 90409877 90409877 G A MDN1 Silent p.T2925T 0.04 TCGA-42-2582-01 7 100456550 100456550 G A SLC12A9 Missense_Mutation p.G284E 0.23 deleterious(0) probably_damaging(0.999) TCGA-42-2582-01 7 107258898 107258898 T A BCAP29 Missense_Mutation p.Y299N 0.20 deleterious_low_confidence(0) benign(0) TCGA-42-2582-01 7 121943919 121943919 G T FEZF1 Missense_Mutation p.H191Q 0.22 tolerated(0.22) benign(0.003) TCGA-42-2582-01 7 20198696 20198696 G T MACC1 Missense_Mutation p.P430T 0.35 deleterious(0.04) possibly_damaging(0.759) TCGA-42-2582-01 7 31862710 31862710 C G PDE1C Missense_Mutation p.R580T 0.27 tolerated(0.16) benign(0.001) TCGA-42-2582-01 7 87178682 87178682 A T ABCB1 Silent p.V569V 0.04 TCGA-42-2582-01 7 87178715 87178715 C T ABCB1 Silent p.T558T 0.26 TCGA-42-2582-01 7 87835800 87835800 C T SRI Missense_Mutation p.S197N 0.21 tolerated(0.15) benign(0.007) TCGA-42-2582-01 7 93116281 93116281 A G CALCR Missense_Mutation p.F23L 0.19 tolerated_low_confidence(1) benign(0.001) TCGA-42-2582-01 8 143425640 143425640 G C TSNARE1 Missense_Mutation p.H144Q 0.10 deleterious_low_confidence(0.03) possibly_damaging(0.767) TCGA-42-2582-01 8 20075706 20075706 G C ATP6V1B2 Missense_Mutation p.A437P 0.06 deleterious(0) probably_damaging(0.998) TCGA-42-2582-01 8 41399701 41399701 G C GINS4 3'UTR 0.36 TCGA-42-2582-01 8 67968839 67968839 C G COPS5 Missense_Mutation p.G192R 0.08 deleterious(0.01) possibly_damaging(0.816) TCGA-42-2582-01 9 117187439 117187439 G T DFNB31 Intron 0.49 TCGA-42-2582-01 9 127969863 127969863 G C RABEPK Missense_Mutation p.G25A 0.25 deleterious(0.01) probably_damaging(0.987) TCGA-42-2582-01 9 5185596 5185596 G T INSL6 Silent p.R3R 0.38 TCGA-42-2582-01 9 5300023 5300023 C A RLN2 3'UTR 0.39 TCGA-42-2582-01 9 8317907 8317907 C A PTPRD Missense_Mutation p.E1902D 0.34 deleterious(0) probably_damaging(0.979) TCGA-42-2582-01 9 90582352 90582352 G C CDK20 3'UTR 0.32 TCGA-42-2582-01 X 10085348 10085348 C T WWC3 Missense_Mutation p.P417S 0.55 tolerated(0.08) probably_damaging(1) TCGA-42-2582-01 X 102005393 102005393 A C BHLHB9 Missense_Mutation p.L490F 0.33 tolerated(0.96) probably_damaging(0.987) TCGA-42-2582-01 X 114880760 114880760 T C PLS3 Silent p.H472H 0.09 TCGA-42-2582-01 X 124097586 124097586 C T TENM1 Missense_Mutation p.C6Y 0.23 tolerated_low_confidence(0.07) possibly_damaging(0.733) TCGA-42-2582-01 X 134993362 134993362 A T SAGE1 Missense_Mutation p.T673S 0.21 tolerated(0.26) benign(0.136) TCGA-42-2582-01 X 150909361 150909361 T A CNGA2 Missense_Mutation p.L157Q 0.22 deleterious(0) possibly_damaging(0.907) TCGA-42-2582-01 X 71708844 71708844 T C HDAC8 Missense_Mutation p.S226G 0.05 deleterious(0.01) possibly_damaging(0.601) TCGA-42-2582-01 X 92927626 92927626 T G NAP1L3 Missense_Mutation p.E226D 0.29 tolerated_low_confidence(0.17) possibly_damaging(0.523) TCGA-42-2587-01 10 121658043 121658043 A C SEC23IP Missense_Mutation p.S90R 0.18 deleterious(0.01) benign(0.273) TCGA-42-2587-01 10 26310606 26310606 C G MYO3A Intron 0.24 TCGA-42-2587-01 10 26781274 26781274 G A APBB1IP Missense_Mutation p.D7N 0.28 deleterious(0) probably_damaging(0.993) TCGA-42-2587-01 10 28101268 28101268 C G ARMC4 3'UTR 0.18 TCGA-42-2587-01 10 29776123 29776123 C T SVIL Missense_Mutation p.G1485E 0.34 deleterious(0) probably_damaging(1) TCGA-42-2587-01 10 44876221 44876221 G T CXCL12 Missense_Mutation p.L57I 0.15 tolerated(0.09) probably_damaging(0.952) TCGA-42-2587-01 10 5682766 5682766 C T ASB13 Missense_Mutation p.C246Y 0.27 deleterious(0) probably_damaging(0.992) TCGA-42-2587-01 10 72192504 72192504 C G NODAL 3'UTR 0.29 TCGA-42-2587-01 10 7682777 7682777 C G ITIH5 Missense_Mutation p.R114T 0.19 deleterious(0) possibly_damaging(0.549) TCGA-42-2587-01 10 92675935 92675935 C T ANKRD1 Missense_Mutation p.R215Q 0.34 tolerated(0.14) possibly_damaging(0.897) TCGA-42-2587-01 11 111225140 111225140 A G POU2AF1 Missense_Mutation p.V206A 0.12 deleterious(0) possibly_damaging(0.657) TCGA-42-2587-01 11 116824810 116824810 T G SIK3 Missense_Mutation p.E77A 0.15 deleterious(0.01) benign(0.271) TCGA-42-2587-01 11 118773562 118773562 C A BCL9L Missense_Mutation p.G297V 0.15 probably_damaging(0.972) TCGA-42-2587-01 11 121428091 121428091 T C SORL1 Silent p.A880A 0.24 TCGA-42-2587-01 11 124440034 124440034 T G OR8A1 Missense_Mutation p.S24A 0.15 deleterious(0) possibly_damaging(0.598) TCGA-42-2587-01 11 124765553 124765553 G T ROBO4 Missense_Mutation p.S279Y 0.19 deleterious(0.02) probably_damaging(0.947) TCGA-42-2587-01 11 128840428 128840428 T G ARHGAP32 Silent p.G1546G 0.16 TCGA-42-2587-01 11 128840429 128840429 C T ARHGAP32 Missense_Mutation p.G1546E 0.16 tolerated_low_confidence(0.08) probably_damaging(0.915) TCGA-42-2587-01 11 129939869 129939869 A C APLP2 5'UTR 0.20 TCGA-42-2587-01 11 44956512 44956512 G A TP53I11 Silent p.L165L 0.34 TCGA-42-2587-01 11 56511036 56511036 C A OR9G4 Missense_Mutation p.L84F 0.37 deleterious(0) probably_damaging(0.999) TCGA-42-2587-01 11 60739292 60739315 GCTTCCCACAGGCAGCCACGCGTA - CD6 5'UTR 0.58 TCGA-42-2587-01 11 64034924 64034924 G T PLCB3 Missense_Mutation p.D1201Y 0.16 deleterious(0) possibly_damaging(0.639) TCGA-42-2587-01 11 66033414 66033414 G A KLC2 Missense_Mutation p.M511I 0.49 tolerated_low_confidence(0.42) benign(0) TCGA-42-2587-01 11 71946470 71946470 C A INPPL1 Silent p.R878R 0.16 TCGA-42-2587-01 11 72408491 72408491 C A ARAP1 Missense_Mutation p.G944C 0.10 tolerated(0.1) benign(0.112) TCGA-42-2587-01 11 72527857 72527857 C T ATG16L2 Missense_Mutation p.T68I 0.10 tolerated(0.23) benign(0.048) TCGA-42-2587-01 11 73677253 73677273 GGAGGCAGGGCACACGCATCA - DNAJB13 In_Frame_Del p.W188_T195delinsS 0.14 TCGA-42-2587-01 11 74303709 74303709 G A POLD3 Silent p.A2A 0.15 TCGA-42-2587-01 11 92702947 92702947 G A MTNR1B Missense_Mutation p.R19H 0.76 tolerated(0.14) benign(0.003) TCGA-42-2587-01 12 122281642 122281642 C G HPD Missense_Mutation p.V310L 0.45 tolerated(0.55) benign(0.114) TCGA-42-2587-01 12 18852725 18852725 T G PLCZ1 Intron 0.24 TCGA-42-2587-01 12 4736433 4736433 C A AKAP3 Missense_Mutation p.R545S 0.25 tolerated(0.74) benign(0.055) TCGA-42-2587-01 12 48535129 48535129 G T PFKM Missense_Mutation p.W530C 0.29 deleterious(0) probably_damaging(1) TCGA-42-2587-01 12 49398332 49398332 G C PRKAG1 Nonsense_Mutation p.Y174* 0.29 TCGA-42-2587-01 12 50344953 50344953 G A AQP2 Missense_Mutation p.G114R 0.23 tolerated(0.09) probably_damaging(0.967) TCGA-42-2587-01 12 56713505 56713505 T A PAN2 Missense_Mutation p.K1001I 0.33 deleterious(0.03) probably_damaging(0.981) TCGA-42-2587-01 12 72366384 72366384 C G TPH2 Missense_Mutation p.P232A 0.30 tolerated(0.09) benign(0.281) TCGA-42-2587-01 12 88586468 88586468 T C TMTC3 Silent p.D598D 0.27 TCGA-42-2587-01 13 115057249 115057249 G C UPF3A Missense_Mutation p.E276D 0.63 tolerated(0.05) possibly_damaging(0.62) TCGA-42-2587-01 13 48951105 48951105 G - RB1 Frame_Shift_Del p.G423Dfs*34 0.41 TCGA-42-2587-01 14 23868006 23868006 C A MYH6 Missense_Mutation p.A608S 0.36 deleterious(0.04) benign(0.054) TCGA-42-2587-01 14 64587762 64587762 G C SYNE2 Missense_Mutation p.D4381H 0.03 probably_damaging(1) TCGA-42-2587-01 15 101718613 101718613 C G CHSY1 Missense_Mutation p.M463I 0.30 tolerated(0.16) benign(0.006) TCGA-42-2587-01 15 102346199 102346199 T C OR4F6 Missense_Mutation p.S93P 0.26 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-42-2587-01 15 29561597 29561597 G C NDNL2 Missense_Mutation p.P105A 0.43 deleterious(0) probably_damaging(0.994) TCGA-42-2587-01 15 51791063 51791063 G A DMXL2 Missense_Mutation p.P1453L 0.09 tolerated(0.1) benign(0.06) TCGA-42-2587-01 15 51791064 51791064 G C DMXL2 Missense_Mutation p.P1453A 0.10 tolerated(0.41) benign(0.001) TCGA-42-2587-01 15 51791066 51791066 A T DMXL2 Missense_Mutation p.I1452K 0.10 tolerated(0.93) benign(0.002) TCGA-42-2587-01 15 65623543 65623543 T C IGDCC3 Missense_Mutation p.E469G 0.40 tolerated(0.43) benign(0.02) TCGA-42-2587-01 15 75042402 75042402 G A CYP1A2 Missense_Mutation p.R108Q 0.15 deleterious(0) probably_damaging(0.988) TCGA-42-2587-01 15 79304860 79304860 C A RASGRF1 Missense_Mutation p.R612S 0.42 tolerated(0.64) benign(0) TCGA-42-2587-01 15 80452117 80452136 TGGGCCTGGGTCAGGCTGCC - FAH Frame_Shift_Del p.G72Efs*21 0.76 TCGA-42-2587-01 16 17228434 17228434 G T XYLT1 Silent p.I641I 0.11 TCGA-42-2587-01 16 17228435 17228435 A C XYLT1 Missense_Mutation p.I641S 0.11 tolerated(0.41) benign(0.232) TCGA-42-2587-01 16 2030431 2030431 G C NOXO1 Missense_Mutation p.P118R 0.47 tolerated(0.18) possibly_damaging(0.838) TCGA-42-2587-01 16 27790052 27790052 G A KIAA0556 3'UTR 0.16 TCGA-42-2587-01 16 30522399 30522399 G A ITGAL Missense_Mutation p.D910N 0.21 tolerated(0.32) benign(0.02) TCGA-42-2587-01 16 53513102 53513102 C T RBL2 Missense_Mutation p.R914C 0.32 deleterious(0) probably_damaging(0.959) TCGA-42-2587-01 16 66436859 66436859 C G CDH5 Missense_Mutation p.D714E 0.51 tolerated(0.4) possibly_damaging(0.553) TCGA-42-2587-01 16 67226979 67226979 G A E2F4 Missense_Mutation p.E105K 0.45 tolerated(0.06) benign(0.012) TCGA-42-2587-01 16 731186 731186 A T STUB1 Missense_Mutation p.N65I 0.42 deleterious(0) probably_damaging(1) TCGA-42-2587-01 16 80654773 80654773 C T CDYL2 Silent p.L298L 0.53 TCGA-42-2587-01 16 89643970 89643970 G C CPNE7 Silent p.R66R 0.45 TCGA-42-2587-01 17 10368836 10368836 T A MYH4 Missense_Mutation p.Y143F 0.20 deleterious(0.04) probably_damaging(0.945) TCGA-42-2587-01 17 27003401 27003401 G T SUPT6H Missense_Mutation p.D284Y 0.20 deleterious(0) probably_damaging(0.984) TCGA-42-2587-01 17 27577316 27577316 C T CRYBA1 Silent p.G71G 0.15 TCGA-42-2587-01 17 3446831 3446831 A T TRPV3 Missense_Mutation p.L135M 0.16 deleterious(0.02) possibly_damaging(0.826) TCGA-42-2587-01 17 40330944 40330944 C T KCNH4 Silent p.E59E 0.59 TCGA-42-2587-01 17 47810026 47810026 G C FAM117A Missense_Mutation p.Q85E 0.03 tolerated(0.16) benign(0.228) TCGA-42-2587-01 17 74774279 74774279 G A MFSD11 Missense_Mutation p.A399T 0.47 deleterious(0.03) probably_damaging(0.979) TCGA-42-2587-01 17 7577568 7577568 C T TP53 Missense_Mutation p.C238Y 0.52 deleterious(0) probably_damaging(1) TCGA-42-2587-01 17 76967999 76967999 C T LGALS3BP Missense_Mutation p.D473N 0.48 tolerated(0.93) benign(0.006) TCGA-42-2587-01 18 21494780 21494780 G A LAMA3 Missense_Mutation p.E2534K 0.18 possibly_damaging(0.842) TCGA-42-2587-01 18 7888115 7888115 C G PTPRM Missense_Mutation p.L70V 0.43 tolerated(0.16) benign(0.009) TCGA-42-2587-01 19 12800615 12800616 - GCA FBXW9 In_Frame_Ins p.L368dup 0.27 TCGA-42-2587-01 19 1854633 1854633 C T KLF16 Missense_Mutation p.R195H 0.55 deleterious(0) probably_damaging(0.975) TCGA-42-2587-01 19 19414218 19414218 G T SUGP1 Nonsense_Mutation p.Y234* 0.13 TCGA-42-2587-01 19 36347813 36347813 A G KIRREL2 5'Flank 0.44 TCGA-42-2587-01 19 38968433 38968433 C T RYR1 Silent p.H1459H 0.27 TCGA-42-2587-01 19 39224367 39224367 G C CAPN12 Missense_Mutation p.L645V 0.03 deleterious(0) probably_damaging(0.963) TCGA-42-2587-01 19 39734530 39734530 C T IFNL3 Silent p.T142T 0.18 TCGA-42-2587-01 19 39760395 39760395 G A IFNL2 Silent p.T146T 0.12 TCGA-42-2587-01 19 43349270 43349270 T G PSG10P RNA 0.06 TCGA-42-2587-01 19 45184572 45184572 A G CEACAM19 Missense_Mutation p.I260M 0.26 tolerated(0.78) benign(0.001) TCGA-42-2587-01 19 45593512 45593512 C G GEMIN7 Missense_Mutation p.A47G 0.38 tolerated(0.48) benign(0) TCGA-42-2587-01 19 53454173 53454173 G T ZNF816 Nonsense_Mutation p.Y285* 0.34 TCGA-42-2587-01 19 53995905 53995905 T G ZNF813 3'UTR 0.27 TCGA-42-2587-01 19 57036523 57036523 C G ZNF471 Missense_Mutation p.R363G 0.35 deleterious(0.01) probably_damaging(0.988) TCGA-42-2587-01 1 109192951 109192951 G C HENMT1 Missense_Mutation p.P213R 0.31 deleterious(0) benign(0.358) TCGA-42-2587-01 1 109525396 109525396 C A WDR47 Missense_Mutation p.D709Y 0.29 deleterious(0) possibly_damaging(0.838) TCGA-42-2587-01 1 116947177 116947177 G A ATP1A1 3'UTR 0.28 TCGA-42-2587-01 1 11879592 11879592 G C CLCN6 Missense_Mutation p.K109N 0.30 deleterious(0) probably_damaging(0.989) TCGA-42-2587-01 1 144994641 144994641 C G PDE4DIP Missense_Mutation p.E31Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-42-2587-01 1 145474108 145474108 A T ANKRD34A Silent p.P260P 0.22 TCGA-42-2587-01 1 147230155 147230155 C T GJA5 3'UTR 0.27 TCGA-42-2587-01 1 155701179 155701179 C G DAP3 Missense_Mutation p.N292K 0.12 deleterious(0.02) possibly_damaging(0.673) TCGA-42-2587-01 1 156642452 156642452 C T NES Missense_Mutation p.A510T 0.03 tolerated(0.23) benign(0.063) TCGA-42-2587-01 1 157559023 157559023 C T FCRL4 Missense_Mutation p.S93N 0.39 deleterious(0) probably_damaging(0.999) TCGA-42-2587-01 1 157666105 157666105 G C FCRL3 Missense_Mutation p.S286C 0.28 deleterious(0) probably_damaging(0.999) TCGA-42-2587-01 1 171621198 171621198 C T MYOC Missense_Mutation p.C185Y 0.52 deleterious(0) probably_damaging(0.916) TCGA-42-2587-01 1 178834753 178834753 G A ANGPTL1 Silent p.F53F 0.29 TCGA-42-2587-01 1 193099331 193099331 C G CDC73 Missense_Mutation p.P89A 0.21 tolerated(0.05) possibly_damaging(0.831) TCGA-42-2587-01 1 201965318 201965318 G C RNPEP Missense_Mutation p.E261Q 0.31 tolerated(0.36) benign(0.016) TCGA-42-2587-01 1 215914835 215914835 C A USH2A Missense_Mutation p.A3865S 0.24 benign(0.126) TCGA-42-2587-01 1 220267775 220267775 A G IARS2 Missense_Mutation p.M73V 0.25 tolerated(0.17) benign(0.012) TCGA-42-2587-01 1 228290929 228290929 G A C1orf35 5'UTR 0.19 TCGA-42-2587-01 1 248551628 248551628 C A OR2T6 Missense_Mutation p.T240N 0.18 deleterious(0) probably_damaging(1) TCGA-42-2587-01 1 34052763 34052763 G C CSMD2 Missense_Mutation p.P2290A 0.46 tolerated(0.08) benign(0.028) TCGA-42-2587-01 1 43133283 43133284 - AATACTGT PPIH Intron 0.29 TCGA-42-2587-01 1 47028368 47028396 CGCAGTGACCCACGAAGGGTGGGTAGCCA - MKNK1 Frame_Shift_Del p.S296Rfs*21 0.19 TCGA-42-2587-01 1 62271127 62271127 C G INADL Silent p.V519V 0.36 TCGA-42-2587-01 1 894653 894653 G C NOC2L 5'UTR 0.50 TCGA-42-2587-01 20 2796199 2796199 T A C20orf141 Silent p.T92T 0.32 TCGA-42-2587-01 20 47260987 47260987 T A PREX1 Missense_Mutation p.R1187S 0.24 tolerated(0.13) possibly_damaging(0.589) TCGA-42-2587-01 20 5844128 5844128 C A C20orf196 3'UTR 0.22 TCGA-42-2587-01 20 5943981 5943981 T G MCM8 Missense_Mutation p.V284G 0.20 tolerated(0.38) benign(0.15) TCGA-42-2587-01 21 31768518 31768518 T G KRTAP13-1 Silent p.T38T 0.45 TCGA-42-2587-01 22 31043034 31043034 A C SLC35E4 3'UTR 0.63 TCGA-42-2587-01 22 31330883 31330905 TGCACCAGAGGGGCAGGTCGGGA - MORC2 Frame_Shift_Del p.S624Afs*42 0.17 TCGA-42-2587-01 2 170062940 170062940 A G LRP2 Silent p.S2430S 0.25 TCGA-42-2587-01 2 173431632 173431632 C G PDK1 Missense_Mutation p.S247C 0.19 tolerated(0.05) benign(0.188) TCGA-42-2587-01 2 191898662 191898662 G T STAT4 Missense_Mutation p.H564N 0.18 deleterious(0.01) possibly_damaging(0.677) TCGA-42-2587-01 2 207619911 207619911 C A MDH1B Missense_Mutation p.E244D 0.35 tolerated(0.39) benign(0.037) TCGA-42-2587-01 2 218696175 218696175 C A TNS1 Intron 0.12 TCGA-42-2587-01 2 219134725 219134725 C A AAMP Nonsense_Mutation p.E29* 0.26 TCGA-42-2587-01 2 234669339 234669339 C G UGT1A8 Intron 0.44 TCGA-42-2587-01 2 39477711 39477711 T A MAP4K3 3'UTR 0.40 TCGA-42-2587-01 2 39487854 39487854 T C MAP4K3 Missense_Mutation p.E734G 0.24 deleterious(0) benign(0.186) TCGA-42-2587-01 2 44531474 44531474 G C SLC3A1 Missense_Mutation p.W443C 0.18 deleterious(0) probably_damaging(1) TCGA-42-2587-01 3 11059642 11059642 C A SLC6A1 Missense_Mutation p.L118M 0.38 deleterious(0.03) probably_damaging(0.97) TCGA-42-2587-01 3 12458340 12458340 G C PPARG Missense_Mutation p.E319D 0.07 deleterious(0.04) probably_damaging(0.972) TCGA-42-2587-01 3 142443565 142443565 G A TRPC1 Missense_Mutation p.C55Y 0.03 deleterious(0) possibly_damaging(0.481) TCGA-42-2587-01 3 16216631 16216631 C A GALNT15 5'UTR 0.05 TCGA-42-2587-01 3 184064484 184064518 GGTCTCCGTGTCACTGCTGCTGGTGGCACTGTCTC - CLCN2 Frame_Shift_Del p.R858Hfs*2 0.35 TCGA-42-2587-01 3 186971048 186971048 G C MASP1 Missense_Mutation p.P267R 0.19 tolerated(1) benign(0.002) TCGA-42-2587-01 3 52003497 52003497 T C ABHD14B Missense_Mutation p.D193G 0.17 deleterious(0.01) probably_damaging(0.978) TCGA-42-2587-01 3 97806545 97806545 C T OR5AC2 Missense_Mutation p.H177Y 0.31 tolerated(0.07) benign(0.139) TCGA-42-2587-01 4 106614528 106614528 T A INTS12 Missense_Mutation p.D142V 0.46 deleterious(0.01) possibly_damaging(0.841) TCGA-42-2587-01 4 158257019 158257019 T A GRIA2 Missense_Mutation p.L488H 0.46 deleterious(0) probably_damaging(0.985) TCGA-42-2587-01 4 6296894 6296894 A G WFS1 Missense_Mutation p.E280G 0.51 tolerated(0.09) probably_damaging(0.988) TCGA-42-2587-01 4 74853710 74853710 G C PPBP Silent p.T37T 0.29 TCGA-42-2587-01 4 84374423 84374423 C G HELQ Missense_Mutation p.D325H 0.46 deleterious(0.01) benign(0.052) TCGA-42-2587-01 5 102482230 102482230 G A PPIP5K2 Splice_Site p.X163_splice 0.10 TCGA-42-2587-01 5 127697452 127697452 C T FBN2 Missense_Mutation p.G840R 0.19 deleterious(0) probably_damaging(0.999) TCGA-42-2587-01 5 132234820 132234820 G A AFF4 Missense_Mutation p.T401I 0.22 deleterious(0.04) benign(0.007) TCGA-42-2587-01 5 140579941 140579941 G T PCDHB11 Missense_Mutation p.K198N 0.21 deleterious_low_confidence(0) possibly_damaging(0.551) TCGA-42-2587-01 5 140615491 140615491 C G PCDHB18 RNA 0.37 TCGA-42-2587-01 5 176517632 176517632 G A FGFR4 Silent p.Q111Q 0.35 TCGA-42-2587-01 5 480132 480132 C G SLC9A3 Intron 0.15 TCGA-42-2587-01 5 94030921 94030921 A G ANKRD32 Silent p.E1027E 0.51 TCGA-42-2587-01 6 10875140 10875140 A G GCM2 Silent p.G203G 0.16 TCGA-42-2587-01 6 152265553 152265553 C A ESR1 Missense_Mutation p.P336T 0.58 deleterious(0) possibly_damaging(0.458) TCGA-42-2587-01 6 26285587 26285587 A G HIST1H4H Silent p.I47I 0.39 TCGA-42-2587-01 6 33402968 33402968 T G SYNGAP1 Missense_Mutation p.H183Q 0.21 tolerated(0.07) benign(0.28) TCGA-42-2587-01 6 38893978 38893978 G T DNAH8 Missense_Mutation p.D3487Y 0.24 possibly_damaging(0.482) TCGA-42-2587-01 6 41038868 41038868 C G OARD1 Intron 0.17 TCGA-42-2587-01 6 42988453 42988453 C T KLHDC3 Silent p.I377I 0.30 TCGA-42-2587-01 6 83905884 83905884 G T RWDD2A Missense_Mutation p.D258Y 0.12 deleterious(0) probably_damaging(0.995) TCGA-42-2587-01 6 83905952 83905952 G A RWDD2A Silent p.Q280Q 0.11 TCGA-42-2587-01 6 88251647 88251647 G T RARS2 Missense_Mutation p.H201N 0.14 deleterious(0) probably_damaging(0.995) TCGA-42-2587-01 6 90605258 90605258 A C GJA10 Silent p.S357S 0.24 TCGA-42-2587-01 7 100224455 100224455 C T TFR2 Silent p.R689R 0.25 TCGA-42-2587-01 7 103368647 103368647 A C RELN Missense_Mutation p.C222G 0.09 deleterious(0.03) benign(0.264) TCGA-42-2587-01 7 105912982 105912982 C G NAMPT Missense_Mutation p.W147C 0.21 deleterious(0) possibly_damaging(0.78) TCGA-42-2587-01 7 1132411 1132411 C T GPER1 Silent p.N349N 0.23 TCGA-42-2587-01 7 136699622 136699622 T A CHRM2 Missense_Mutation p.S4T 0.23 tolerated(0.34) unknown(0) TCGA-42-2587-01 7 137076016 137076016 G A DGKI Missense_Mutation p.R1050C 0.43 tolerated(0.09) benign(0.004) TCGA-42-2587-01 7 141536936 141536936 C T PRSS37 Silent p.V181V 0.23 TCGA-42-2587-01 7 143027916 143027916 A G CLCN1 Missense_Mutation p.Y302C 0.20 deleterious(0) probably_damaging(0.999) TCGA-42-2587-01 7 16502347 16502347 A G SOSTDC1 Silent p.D149D 0.03 TCGA-42-2587-01 7 24331335 24331335 T C NPY 3'UTR 0.08 TCGA-42-2587-01 7 36580054 36580054 A T AOAH Missense_Mutation p.Y393N 0.03 tolerated(0.19) possibly_damaging(0.694) TCGA-42-2587-01 7 44179950 44179950 G T MYL7 Missense_Mutation p.F90L 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-42-2587-01 7 80300301 80300301 A G CD36 Missense_Mutation p.Y276C 0.44 deleterious(0.01) probably_damaging(0.987) TCGA-42-2587-01 7 91708846 91708846 G T AKAP9 Missense_Mutation p.V2467L 0.19 benign(0.006) TCGA-42-2587-01 7 92764390 92764390 G A SAMD9L Missense_Mutation p.P299S 0.04 tolerated(0.83) benign(0.006) TCGA-42-2587-01 8 100128018 100128018 T C VPS13B Missense_Mutation p.Y285H 0.08 deleterious(0) benign(0.403) TCGA-42-2587-01 8 101721841 101721841 T C PABPC1 Missense_Mutation p.Y364C 0.03 deleterious(0) probably_damaging(0.997) TCGA-42-2587-01 8 92406522 92406522 C T SLC26A7 3'UTR 0.31 TCGA-42-2587-01 9 108483838 108483838 C G TMEM38B Missense_Mutation p.P97R 0.22 deleterious(0) probably_damaging(1) TCGA-42-2587-01 9 112900197 112900197 G A PALM2-AKAP2 Silent p.P791P 0.36 TCGA-42-2587-01 9 114304468 114304468 A T ZNF483 Missense_Mutation p.K418I 0.11 deleterious(0) benign(0.377) TCGA-42-2587-01 9 117165559 117165559 C A DFNB31 Missense_Mutation p.G827C 0.38 deleterious(0) probably_damaging(1) TCGA-42-2587-01 9 135982607 135982607 C T RALGDS Silent p.L426L 0.11 TCGA-42-2587-01 9 137774380 137774380 A G FCN2 Missense_Mutation p.M37V 0.48 tolerated(1) benign(0) TCGA-42-2587-01 9 138642002 138642002 T C KCNT1 Missense_Mutation p.F105L 0.38 deleterious(0.03) benign(0.303) TCGA-42-2587-01 9 35043225 35043225 C G C9orf131 Missense_Mutation p.P200R 0.52 deleterious(0) probably_damaging(0.999) TCGA-42-2587-01 9 86502015 86502015 C G KIF27 Missense_Mutation p.R727T 0.26 deleterious(0) possibly_damaging(0.721) TCGA-42-2587-01 9 96054853 96054853 G T WNK2 Missense_Mutation p.E1739D 0.32 unknown(0) TCGA-42-2587-01 X 135292251 135292251 C A FHL1 3'UTR 0.29 TCGA-42-2587-01 X 135292252 135292252 C A FHL1 3'UTR 0.29 TCGA-42-2587-01 X 141291029 141291034 TGACCT GGCA MAGEC2 Frame_Shift_Del p.E247Vfs*24 0.23 TCGA-42-2587-01 X 151424430 151424439 TCATGCCATG - GABRA3 Frame_Shift_Del p.T121Mfs*4 0.21 TCGA-42-2587-01 X 2161118 2161118 G C DHRSX Missense_Mutation p.H250Q 0.42 deleterious(0) probably_damaging(0.947) TCGA-42-2587-01 X 26212169 26212169 C T MAGEB6 Missense_Mutation p.P69L 0.14 tolerated(0.29) possibly_damaging(0.874) TCGA-42-2587-01 X 41334057 41334057 G T NYX Missense_Mutation p.V451L 0.56 tolerated_low_confidence(0.19) benign(0.002) TCGA-42-2588-01 10 102057289 102057289 C T PKD2L1 Missense_Mutation p.G269D 0.24 deleterious(0) probably_damaging(0.992) TCGA-42-2588-01 10 134623928 134623928 C T TTC40 Missense_Mutation p.R2550Q 0.34 tolerated_low_confidence(0.14) benign(0.049) TCGA-42-2588-01 10 21185902 21185902 C T NEBL Silent p.T46T 0.18 TCGA-42-2588-01 10 70679675 70679675 A G DDX50 Missense_Mutation p.I393V 0.08 deleterious(0.04) possibly_damaging(0.685) TCGA-42-2588-01 11 46782247 46782247 C T CKAP5 Missense_Mutation p.E1437K 0.11 tolerated(0.17) benign(0.334) TCGA-42-2588-01 12 115112565 115112565 G A TBX3 Missense_Mutation p.A392V 0.17 tolerated(0.27) benign(0.003) TCGA-42-2588-01 12 123276620 123276620 C T CCDC62 Missense_Mutation p.R242C 0.25 deleterious(0) probably_damaging(0.999) TCGA-42-2588-01 12 123825568 123825568 G A SBNO1 Silent p.N206N 0.28 TCGA-42-2588-01 13 25276176 25276176 G A ATP12A Missense_Mutation p.R668H 0.29 deleterious(0.02) probably_damaging(0.954) TCGA-42-2588-01 14 72200444 72200444 G A SIPA1L1 Missense_Mutation p.M1662I 0.28 tolerated(0.17) benign(0.001) TCGA-42-2588-01 15 65471338 65471338 T C CLPX Missense_Mutation p.K98E 0.27 tolerated(0.17) probably_damaging(0.98) TCGA-42-2588-01 15 65559014 65559014 G A PARP16 Silent p.N135N 0.18 TCGA-42-2588-01 16 11000367 11000371 CAGTT - CIITA Frame_Shift_Del p.Q340Lfs*58 0.44 TCGA-42-2588-01 16 55579714 55579714 G A LPCAT2 Missense_Mutation p.R307Q 0.17 deleterious(0.02) possibly_damaging(0.581) TCGA-42-2588-01 17 10432209 10432209 C T MYH2 Missense_Mutation p.R1181H 0.61 deleterious(0.04) benign(0.302) TCGA-42-2588-01 17 27277212 27277212 C T PHF12 Missense_Mutation p.S40N 0.41 tolerated(0.16) benign(0.035) TCGA-42-2588-01 17 37619152 37619153 - C CDK12 Frame_Shift_Ins p.Y279Lfs*19 0.49 TCGA-42-2588-01 17 46847347 46847347 G A TTLL6 Missense_Mutation p.T718M 0.62 tolerated_low_confidence(0.61) benign(0.029) TCGA-42-2588-01 17 48742574 48742574 G A ABCC3 Missense_Mutation p.G467R 0.60 deleterious(0.01) possibly_damaging(0.847) TCGA-42-2588-01 17 7574013 7574013 G - TP53 Frame_Shift_Del p.F338Lfs*7 0.41 TCGA-42-2588-01 19 36322249 36322249 G A NPHS1 Silent p.N1112N 0.32 TCGA-42-2588-01 19 50983882 50983882 C T EMC10 Silent p.H149H 0.28 TCGA-42-2588-01 1 167889285 167889285 A G MPC2 Silent p.N93N 0.29 TCGA-42-2588-01 1 171605738 171605738 G T MYOC Missense_Mutation p.T281N 0.27 tolerated(0.07) probably_damaging(0.989) TCGA-42-2588-01 1 222717104 222717104 C T HHIPL2 Missense_Mutation p.R250H 0.31 deleterious(0.01) possibly_damaging(0.69) TCGA-42-2588-01 1 2938217 2938219 ATT CTTC ACTRT2 5'UTR 0.52 TCGA-42-2588-01 1 40960830 40960830 G T ZFP69 Missense_Mutation p.G227V 0.38 tolerated(0.3) benign(0.01) TCGA-42-2588-01 20 31040143 31040143 G A C20orf112 Missense_Mutation p.P329L 0.28 tolerated(0.56) possibly_damaging(0.561) TCGA-42-2588-01 21 10914433 10914433 C T TPTE Missense_Mutation p.R429H 0.08 deleterious(0.05) benign(0.038) TCGA-42-2588-01 22 30184758 30184758 G T ASCC2 3'UTR 0.27 TCGA-42-2588-01 2 220099649 220099649 C T ANKZF1 Missense_Mutation p.R436W 0.28 deleterious(0) probably_damaging(0.972) TCGA-42-2588-01 3 100274161 100274161 C A TMEM45A Silent p.R36R 0.29 TCGA-42-2588-01 3 12950858 12950858 G - IQSEC1 Frame_Shift_Del p.N846Tfs*27 0.39 TCGA-42-2588-01 3 50374791 50374791 C T RASSF1 Intron 0.57 TCGA-42-2588-01 4 20555547 20555547 A G SLIT2 Missense_Mutation p.D894G 0.28 tolerated(0.62) probably_damaging(0.998) TCGA-42-2588-01 5 140202914 140202914 G A PCDHA5 Silent p.A518A 0.28 TCGA-42-2588-01 5 140801040 140801040 C T PCDHGA11 Silent p.S82S 0.16 TCGA-42-2588-01 5 156378557 156378557 G A TIMD4 Silent p.P215P 0.28 TCGA-42-2588-01 5 16463842 16463842 T C ZNF622 Missense_Mutation p.D212G 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-42-2588-01 5 64887582 64887582 T C TRIM23 3'UTR 0.29 TCGA-42-2588-01 6 132891636 132891636 A G TAAR6 Missense_Mutation p.H59R 0.03 deleterious(0) probably_damaging(0.976) TCGA-42-2588-01 6 160872095 160872095 C T SLC22A3 3'UTR 0.35 TCGA-42-2588-01 6 24572835 24572835 G T KIAA0319 Missense_Mutation p.S609Y 0.17 deleterious(0.03) possibly_damaging(0.461) TCGA-42-2588-01 6 30692330 30692330 C T TUBB 3'UTR 0.25 TCGA-42-2588-01 6 43477440 43477440 G A LRRC73 Silent p.N28N 0.27 TCGA-42-2588-01 6 50811098 50811098 G A TFAP2B Missense_Mutation p.R459K 0.28 deleterious(0.02) possibly_damaging(0.688) TCGA-42-2588-01 9 139089515 139089515 C G LHX3 Missense_Mutation p.G289R 0.43 deleterious(0.04) benign(0.39) TCGA-42-2588-01 X 108647661 108647661 C T GUCY2F Missense_Mutation p.R674Q 0.22 deleterious(0.03) benign(0.036) TCGA-42-2588-01 X 54209006 54209006 G A FAM120C Missense_Mutation p.P209L 0.22 deleterious(0) probably_damaging(0.999) TCGA-42-2589-01 10 121607129 121607129 C T MCMBP Missense_Mutation p.E275K 0.04 tolerated(0.55) benign(0.004) TCGA-42-2589-01 10 28436480 28436480 G C MPP7 Missense_Mutation p.L83V 0.13 deleterious(0) benign(0.441) TCGA-42-2589-01 10 52573743 52573743 C A A1CF Silent p.L407L 0.39 TCGA-42-2589-01 10 74104771 74104771 T G DNAJB12 Missense_Mutation p.N117T 0.05 tolerated(0.27) benign(0.023) TCGA-42-2589-01 10 95452485 95452485 C - FRA10AC1 Frame_Shift_Del p.E100Kfs*26 0.09 TCGA-42-2589-01 11 122671983 122671983 C A UBASH3B Missense_Mutation p.A513E 0.24 tolerated(0.66) possibly_damaging(0.476) TCGA-42-2589-01 11 124440870 124440870 T A OR8A1 Missense_Mutation p.N302K 0.42 deleterious(0) possibly_damaging(0.881) TCGA-42-2589-01 11 16068144 16068144 C A SOX6 Missense_Mutation p.E513D 0.31 deleterious(0.02) possibly_damaging(0.878) TCGA-42-2589-01 11 6231584 6231584 G C C11orf42 Missense_Mutation p.V193L 0.61 tolerated(0.17) benign(0.02) TCGA-42-2589-01 11 63885420 63885420 G C FLRT1 Missense_Mutation p.V561L 0.40 deleterious(0.01) possibly_damaging(0.61) TCGA-42-2589-01 11 65810469 65810469 C T GAL3ST3 Missense_Mutation p.A269T 0.42 tolerated(0.15) benign(0.192) TCGA-42-2589-01 11 6644764 6644764 C T DCHS1 Missense_Mutation p.V2715M 0.75 tolerated(0.21) benign(0.022) TCGA-42-2589-01 12 52307369 52307369 G T ACVRL1 Nonsense_Mutation p.G114* 0.46 TCGA-42-2589-01 12 52452829 52452829 C G NR4A1 3'UTR 0.41 TCGA-42-2589-01 12 53462034 53462034 C A SPRYD3 Missense_Mutation p.A250S 0.43 deleterious(0.02) possibly_damaging(0.791) TCGA-42-2589-01 12 53462035 53462035 C G SPRYD3 Missense_Mutation p.Q249H 0.42 deleterious(0) probably_damaging(0.921) TCGA-42-2589-01 12 54577550 54577550 C G SMUG1 Missense_Mutation p.E59Q 0.04 deleterious(0.05) benign(0.193) TCGA-42-2589-01 12 57389741 57389741 C G GPR182 Missense_Mutation p.Q250E 0.40 tolerated(0.64) benign(0.02) TCGA-42-2589-01 12 57472511 57472511 T C TMEM194A Silent p.K6K 0.41 TCGA-42-2589-01 12 6483986 6483986 C A SCNN1A Missense_Mutation p.E47D 0.67 tolerated_low_confidence(0.12) benign(0.001) TCGA-42-2589-01 12 70003992 70003992 C T LRRC10 Silent p.A209A 0.08 TCGA-42-2589-01 12 71078030 71078030 C G PTPRR Missense_Mutation p.K458N 0.36 deleterious(0.02) benign(0.016) TCGA-42-2589-01 13 100915018 100915018 C G PCCA Missense_Mutation p.S251C 0.46 deleterious(0) probably_damaging(0.986) TCGA-42-2589-01 13 45965174 45965174 G C SLC25A30 3'Flank 0.08 TCGA-42-2589-01 14 52186956 52186956 C T FRMD6 Missense_Mutation p.P403L 0.73 tolerated(0.69) benign(0.011) TCGA-42-2589-01 14 76420970 76420970 G A TTLL5 3'UTR 0.69 TCGA-42-2589-01 16 12145846 12145846 C A SNX29 Missense_Mutation p.D297E 0.33 tolerated_low_confidence(0.22) probably_damaging(0.944) TCGA-42-2589-01 16 20839845 20839845 C G AC004381.6 Missense_Mutation p.H382D 0.31 tolerated(0.12) benign(0.017) TCGA-42-2589-01 16 20996443 20996443 C T DNAH3 Missense_Mutation p.V2541I 0.33 tolerated(1) benign(0.002) TCGA-42-2589-01 16 2339608 2339608 C T ABCA3 Missense_Mutation p.V843M 0.09 tolerated(0.07) benign(0.067) TCGA-42-2589-01 16 30991352 30991352 C G SETD1A Nonsense_Mutation p.Y1415* 0.43 TCGA-42-2589-01 16 57712216 57712216 G T GPR97 Silent p.G160G 0.72 TCGA-42-2589-01 16 69366758 69366758 G A COG8 Missense_Mutation p.R481C 0.69 deleterious(0) probably_damaging(0.917) TCGA-42-2589-01 16 90109666 90109666 C T GAS8 Silent p.D450D 0.84 TCGA-42-2589-01 17 26961806 26961832 CTCCTCAATTTTGCGGGCAGGCAACAA - KIAA0100 In_Frame_Del p.L926_L934del 0.17 TCGA-42-2589-01 17 36891700 36891700 C G PCGF2 Missense_Mutation p.A271P 0.76 tolerated(0.25) possibly_damaging(0.708) TCGA-42-2589-01 17 3921023 3921023 G T ZZEF1 Missense_Mutation p.S2548Y 0.15 deleterious(0.05) probably_damaging(0.954) TCGA-42-2589-01 17 40332908 40332908 G T KCNH4 Missense_Mutation p.A19D 0.18 deleterious(0) possibly_damaging(0.61) TCGA-42-2589-01 17 45822700 45822700 G A TBX21 Missense_Mutation p.E526K 0.15 deleterious_low_confidence(0.02) benign(0.129) TCGA-42-2589-01 17 57642973 57642973 C G DHX40 5'UTR 0.85 TCGA-42-2589-01 17 63554461 63554461 T A AXIN2 Missense_Mutation p.Y93F 0.81 tolerated(0.14) benign(0.274) TCGA-42-2589-01 17 67537924 67537924 C T MAP2K6 3'UTR 0.77 TCGA-42-2589-01 17 7187299 7187299 C A SLC2A4 Missense_Mutation p.T152K 0.04 tolerated(0.08) benign(0.281) TCGA-42-2589-01 17 7460688 7460690 GTC - TNFSF12 Intron 0.62 TCGA-42-2589-01 17 7578403 7578403 C T TP53 Missense_Mutation p.C176Y 0.71 deleterious(0) probably_damaging(0.995) TCGA-42-2589-01 18 12030523 12030523 C T IMPA2 3'UTR 0.04 TCGA-42-2589-01 18 14543179 14543179 C T POTEC 5'Flank 0.12 TCGA-42-2589-01 18 56964052 56964052 C A CPLX4 Missense_Mutation p.D121Y 0.42 deleterious(0.01) possibly_damaging(0.879) TCGA-42-2589-01 19 43087447 43087447 G T CEACAM8 Missense_Mutation p.A334D 0.72 tolerated(0.2) benign(0.372) TCGA-42-2589-01 19 53793285 53793285 G C BIRC8 Missense_Mutation p.L115V 0.22 tolerated(1) benign(0.001) TCGA-42-2589-01 1 109373233 109373233 C G AKNAD1 Missense_Mutation p.E596Q 0.03 deleterious(0.01) possibly_damaging(0.677) TCGA-42-2589-01 1 151134352 151134352 A T LYSMD1 Silent p.G135G 0.13 TCGA-42-2589-01 1 152671548 152671548 G T LCE2A Silent p.G57G 0.24 TCGA-42-2589-01 1 152732155 152732155 G A KPRP Missense_Mutation p.A31T 0.17 tolerated_low_confidence(0.14) benign(0.12) TCGA-42-2589-01 1 155300288 155300288 G A RUSC1 Missense_Mutation p.E879K 0.02 deleterious(0.03) probably_damaging(0.997) TCGA-42-2589-01 1 156848988 156848988 T G NTRK1 Missense_Mutation p.L627R 0.60 deleterious(0) possibly_damaging(0.862) TCGA-42-2589-01 1 160460936 160460936 A G SLAMF6 Missense_Mutation p.S209P 0.41 deleterious(0.03) possibly_damaging(0.831) TCGA-42-2589-01 1 177133839 177133839 G T ASTN1 5'Flank 0.54 TCGA-42-2589-01 1 182443379 182443379 C A RGSL1 Missense_Mutation p.A378D 0.46 tolerated(0.07) benign(0.031) TCGA-42-2589-01 1 183109570 183109570 A G LAMC1 Missense_Mutation p.N1502S 0.44 tolerated(0.55) benign(0.006) TCGA-42-2589-01 1 19439004 19439004 G T UBR4 Intron 0.12 TCGA-42-2589-01 1 207071088 207071088 A T IL24 5'UTR 0.09 TCGA-42-2589-01 1 211256199 211256199 T A KCNH1 Missense_Mutation p.S161C 0.25 deleterious(0) possibly_damaging(0.827) TCGA-42-2589-01 1 227261589 227261597 TTAACTTTA - CDC42BPA In_Frame_Del p.N901_V903del 0.33 TCGA-42-2589-01 1 235613591 235613591 G A B3GALNT2 Missense_Mutation p.P478L 0.79 deleterious(0) benign(0.388) TCGA-42-2589-01 1 238090743 238090743 C T RP11-193H5.1 RNA 0.05 TCGA-42-2589-01 1 27689414 27689414 C A MAP3K6 Missense_Mutation p.G357V 0.07 deleterious(0) probably_damaging(0.998) TCGA-42-2589-01 1 36754751 36754751 C A THRAP3 Missense_Mutation p.S377R 0.08 tolerated(0.15) possibly_damaging(0.469) TCGA-42-2589-01 1 36755027 36755027 C T THRAP3 Silent p.G469G 0.05 TCGA-42-2589-01 1 47583523 47583523 C A CYP4Z1 Missense_Mutation p.H479N 0.21 deleterious(0.03) benign(0.036) TCGA-42-2589-01 20 239725 239725 A G DEFB132 Silent p.A22A 0.03 TCGA-42-2589-01 20 3683957 3683957 G C SIGLEC1 Missense_Mutation p.S372C 0.24 deleterious(0.01) possibly_damaging(0.852) TCGA-42-2589-01 20 43926617 43926617 G A MATN4 Missense_Mutation p.A507V 0.28 benign(0.138) TCGA-42-2589-01 20 56138629 56138629 T A PCK1 Silent p.G269G 0.42 TCGA-42-2589-01 21 43134209 43134222 CAGGTGACTGCATC - LINC00479 RNA 0.39 TCGA-42-2589-01 21 45950952 45950952 G C TSPEAR Missense_Mutation p.R203G 0.47 deleterious(0) possibly_damaging(0.904) TCGA-42-2589-01 22 24583177 24583177 C T SUSD2 Silent p.F550F 0.15 TCGA-42-2589-01 22 43280541 43280541 C A PACSIN2 Silent p.L212L 0.12 TCGA-42-2589-01 2 136616941 136616941 G A MCM6 Missense_Mutation p.A431V 0.19 deleterious(0.02) probably_damaging(1) TCGA-42-2589-01 2 152325223 152325224 - GTGGCACCA RIF1 In_Frame_Ins p.A2300_V2302dup 0.22 TCGA-42-2589-01 2 189866316 189866316 G A COL3A1 Splice_Site p.X797_splice 0.36 TCGA-42-2589-01 2 201724423 201724423 C G CLK1 Silent p.V218V 0.19 TCGA-42-2589-01 2 201790656 201790656 C A ORC2 Splice_Site p.X351_splice 0.33 TCGA-42-2589-01 2 203378485 203378485 T G BMPR2 Silent p.A154A 0.04 TCGA-42-2589-01 2 21230073 21230073 A G APOB Missense_Mutation p.Y3223H 0.09 probably_damaging(0.997) TCGA-42-2589-01 2 241622248 241622248 C G AQP12B Missense_Mutation p.G3R 0.53 deleterious(0) probably_damaging(0.973) TCGA-42-2589-01 2 264932 264932 C A ACP1 5'UTR 0.17 TCGA-42-2589-01 2 27305517 27305517 C G EMILIN1 Missense_Mutation p.R360G 0.82 benign(0.001) TCGA-42-2589-01 2 27522413 27522413 C G TRIM54 Missense_Mutation p.L177V 0.70 tolerated_low_confidence(0.44) benign(0) TCGA-42-2589-01 2 27596119 27596119 C G SNX17 Missense_Mutation p.Q88E 0.44 tolerated(0.05) possibly_damaging(0.789) TCGA-42-2589-01 2 32660642 32660642 A C BIRC6 Missense_Mutation p.E1163A 0.28 benign(0.024) TCGA-42-2589-01 2 39033742 39033742 C T DHX57 Missense_Mutation p.D1259N 0.03 deleterious(0) probably_damaging(0.985) TCGA-42-2589-01 2 70677904 70677904 C A TGFA 3'UTR 0.50 TCGA-42-2589-01 2 74595991 74595991 A G DCTN1 Missense_Mutation p.L573S 0.37 deleterious(0) probably_damaging(1) TCGA-42-2589-01 3 125877469 125877469 C T ALDH1L1 Silent p.E57E 0.16 TCGA-42-2589-01 3 40231703 40231703 C T MYRIP Silent p.L472L 0.19 TCGA-42-2589-01 4 2077203 2077203 C A POLN Missense_Mutation p.D811Y 0.21 deleterious(0) probably_damaging(0.992) TCGA-42-2589-01 4 55971066 55971066 C G KDR Silent p.T577T 0.03 TCGA-42-2589-01 4 86915767 86915767 G A ARHGAP24 Silent p.V320V 0.68 TCGA-42-2589-01 4 89709064 89709064 G A FAM13A Nonsense_Mutation p.R371* 0.71 TCGA-42-2589-01 5 19483433 19483433 A T CDH18 Missense_Mutation p.L620H 0.41 deleterious(0) probably_damaging(0.997) TCGA-42-2589-01 5 45262305 45262305 C T HCN1 Silent p.V797V 0.34 TCGA-42-2589-01 5 54581243 54581243 C T DHX29 Missense_Mutation p.V412I 0.42 deleterious(0.04) possibly_damaging(0.703) TCGA-42-2589-01 6 107019950 107019950 G C RTN4IP1 Missense_Mutation p.P371R 0.35 deleterious(0.03) possibly_damaging(0.713) TCGA-42-2589-01 6 108882613 108882613 G T FOXO3 Missense_Mutation p.D68Y 0.70 deleterious(0.01) benign(0.032) TCGA-42-2589-01 6 150063682 150063682 T G NUP43 Missense_Mutation p.T116P 0.09 tolerated(0.14) benign(0) TCGA-42-2589-01 6 33371877 33371877 G A KIFC1 Missense_Mutation p.G243R 0.43 tolerated(0.52) benign(0.001) TCGA-42-2589-01 6 34214590 34214590 A C C6orf1 Missense_Mutation p.S61A 0.55 deleterious_low_confidence(0.03) benign(0.38) TCGA-42-2589-01 6 52143648 52143648 C T MCM3 Silent p.R302R 0.40 TCGA-42-2589-01 6 54191699 54191699 C A TINAG Missense_Mutation p.S203R 0.39 tolerated(0.13) benign(0.002) TCGA-42-2589-01 7 104747842 104747842 G C KMT2E Missense_Mutation p.G980R 0.53 deleterious_low_confidence(0.01) benign(0.316) TCGA-42-2589-01 7 137128829 137128829 C T DGKI Missense_Mutation p.D927N 0.38 tolerated(0.16) benign(0.079) TCGA-42-2589-01 7 150692311 150692311 C A NOS3 Missense_Mutation p.T60N 0.36 tolerated(0.6) benign(0.127) TCGA-42-2589-01 7 44260278 44260278 C G CAMK2B Missense_Mutation p.E569Q 0.06 deleterious_low_confidence(0.02) possibly_damaging(0.844) TCGA-42-2589-01 7 89976047 89976047 G C GTPBP10 5'UTR 0.39 TCGA-42-2589-01 7 99720454 99720454 G C CNPY4 Silent p.G130G 0.04 TCGA-42-2589-01 8 127569045 127569045 C G FAM84B Missense_Mutation p.S197T 0.31 tolerated(0.19) possibly_damaging(0.516) TCGA-42-2589-01 8 144682176 144682176 C T TIGD5 3'UTR 0.23 TCGA-42-2589-01 8 27255119 27255119 G T PTK2B Missense_Mutation p.E6D 0.69 tolerated_low_confidence(0.12) benign(0.075) TCGA-42-2589-01 8 57078828 57078828 G T PLAG1 Missense_Mutation p.P493T 0.21 deleterious(0) probably_damaging(0.981) TCGA-42-2589-01 8 57078829 57078829 G T PLAG1 Silent p.L492L 0.21 TCGA-42-2589-01 8 95539310 95539310 G C KIAA1429 Missense_Mutation p.L388V 0.31 tolerated(0.2) probably_damaging(0.998) TCGA-42-2589-01 9 138395782 138395782 A C MRPS2 Missense_Mutation p.I232L 0.10 tolerated(0.11) benign(0.122) TCGA-42-2589-01 9 21239728 21239728 G T IFNA14 Missense_Mutation p.N69K 0.32 tolerated(0.8) benign(0.01) TCGA-42-2589-01 9 69205457 69205457 C G CBWD6 Missense_Mutation p.G361R 0.70 deleterious(0) probably_damaging(0.995) TCGA-42-2589-01 9 990675 990675 C A DMRT3 Silent p.P363P 0.76 TCGA-42-2589-01 X 12736742 12736742 C A FRMPD4 Missense_Mutation p.P1266H 0.48 tolerated_low_confidence(0.53) benign(0.104) TCGA-42-2589-01 X 129205376 129205376 T C ELF4 Missense_Mutation p.N184S 0.05 tolerated(0.7) benign(0.004) TCGA-42-2589-01 X 154213016 154213016 G A F8 Missense_Mutation p.R245W 0.10 tolerated(0.06) benign(0.022) TCGA-42-2589-01 X 32613940 32613943 GTGA - DMD Frame_Shift_Del p.H512Wfs*4 0.11 TCGA-42-2589-01 X 48375613 48375613 G A PORCN Missense_Mutation p.A406T 0.42 tolerated(0.13) benign(0.038) TCGA-42-2589-01 X 70472829 70472829 G C ZMYM3 Missense_Mutation p.P93A 0.89 tolerated_low_confidence(0.22) benign(0.004) TCGA-42-2589-01 X 71427733 71427733 G C ERCC6L Missense_Mutation p.T295S 0.88 deleterious(0) possibly_damaging(0.799) TCGA-42-2590-01 10 35929226 35929226 C T FZD8 Missense_Mutation p.E378K 0.15 tolerated_low_confidence(0.28) benign(0.005) TCGA-42-2590-01 11 44956312 44956312 C A TP53I11 3'UTR 0.41 TCGA-42-2590-01 11 44956313 44956313 C T TP53I11 3'UTR 0.39 TCGA-42-2590-01 11 64374616 64374616 T C NRXN2 3'UTR 0.08 TCGA-42-2590-01 11 95523655 95523655 T C CEP57 5'UTR 0.19 TCGA-42-2590-01 12 116452960 116452960 C T MED13L Missense_Mutation p.V377I 0.12 deleterious(0.03) unknown(0) TCGA-42-2590-01 12 131561317 131561317 T C GPR133 Intron 0.79 TCGA-42-2590-01 12 5022035 5022035 A G KCNA1 3'UTR 0.13 TCGA-42-2590-01 12 53647596 53647596 T A MFSD5 Missense_Mutation p.L433H 0.09 tolerated(0.18) possibly_damaging(0.893) TCGA-42-2590-01 12 57398678 57398678 T C ZBTB39 Silent p.Q8Q 0.24 TCGA-42-2590-01 12 85450734 85450734 A T LRRIQ1 Missense_Mutation p.E721D 0.62 tolerated(0.05) benign(0.03) TCGA-42-2590-01 13 42335323 42335323 C A VWA8 Missense_Mutation p.K789N 0.12 deleterious(0) probably_damaging(0.955) TCGA-42-2590-01 13 52646089 52646089 G C NEK5 Missense_Mutation p.P639A 0.43 tolerated(0.46) benign(0.015) TCGA-42-2590-01 15 22955196 22955196 C T CYFIP1 Silent p.D530D 0.32 TCGA-42-2590-01 15 50154499 50154499 C A ATP8B4 Missense_Mutation p.M1080I 0.41 tolerated(0.43) benign(0.001) TCGA-42-2590-01 15 96880925 96880925 T C NR2F2 3'UTR 0.09 TCGA-42-2590-01 16 20976434 20976434 C G DNAH3 Missense_Mutation p.Q2924H 0.33 tolerated(0.08) benign(0.015) TCGA-42-2590-01 16 27818807 27818807 C T GSG1L Splice_Site p.X300_splice 0.37 TCGA-42-2590-01 16 686168 686168 G T C16orf13 Missense_Mutation p.H41Q 0.63 deleterious(0) probably_damaging(1) TCGA-42-2590-01 16 68842726 68842726 A T CDH1 Missense_Mutation p.D221V 0.20 deleterious(0) probably_damaging(0.999) TCGA-42-2590-01 16 84879575 84879575 T G CRISPLD2 Intron 0.41 TCGA-42-2590-01 17 32647889 32647889 A T CCL8 Missense_Mutation p.K88M 0.15 deleterious(0) probably_damaging(0.946) TCGA-42-2590-01 17 3850844 3850844 C A ATP2A3 Silent p.P312P 0.11 TCGA-42-2590-01 17 38858184 38858184 A T KRT24 Missense_Mutation p.I206N 0.42 deleterious(0.01) possibly_damaging(0.532) TCGA-42-2590-01 17 47075262 47075262 A G IGF2BP1 Missense_Mutation p.K52R 0.14 tolerated(0.33) benign(0.042) TCGA-42-2590-01 17 55926658 55926658 T C MRPS23 Missense_Mutation p.Y53C 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-42-2590-01 17 7573999 7573999 T - TP53 Frame_Shift_Del p.E343Gfs*2 0.38 TCGA-42-2590-01 18 44121818 44121818 C T LOXHD1 Nonsense_Mutation p.W167* 0.40 TCGA-42-2590-01 18 74696735 74696735 T A RP11-862L9.3 3'Flank 0.15 TCGA-42-2590-01 19 1376585 1376585 C T MUM1 3'UTR 0.83 TCGA-42-2590-01 19 14758001 14758001 G C EMR3 Missense_Mutation p.H292D 0.40 deleterious(0.01) benign(0.167) TCGA-42-2590-01 19 14774264 14774264 C T EMR3 Silent p.Q55Q 0.35 TCGA-42-2590-01 19 14952576 14952576 A T OR7A10 Silent p.T38T 0.45 TCGA-42-2590-01 19 38964346 38964346 A T RYR1 Silent p.G1365G 0.24 TCGA-42-2590-01 19 48654585 48654585 G C LIG1 Missense_Mutation p.P160A 0.57 tolerated(0.09) benign(0.159) TCGA-42-2590-01 19 49846651 49846651 T A TEAD2 Missense_Mutation p.D309V 0.20 deleterious(0) probably_damaging(0.997) TCGA-42-2590-01 19 55880236 55880236 G A IL11 Silent p.G27G 0.12 TCGA-42-2590-01 19 58029434 58029434 G T ZNF773 3'UTR 0.62 TCGA-42-2590-01 1 119474281 119474281 T C TBX15 Missense_Mutation p.H21R 0.27 deleterious(0) benign(0.148) TCGA-42-2590-01 1 160259751 160259751 C G COPA 3'UTR 0.22 TCGA-42-2590-01 1 168698375 168698375 A T DPT Missense_Mutation p.V13D 0.37 deleterious(0.01) benign(0.012) TCGA-42-2590-01 1 204956572 204956572 G C NFASC Missense_Mutation p.V833L 0.29 tolerated(0.11) benign(0.343) TCGA-42-2590-01 1 216348797 216348797 A T USH2A Missense_Mutation p.V1475D 0.17 possibly_damaging(0.714) TCGA-42-2590-01 1 226076589 226076589 G T LEFTY1 Missense_Mutation p.Q60K 0.17 tolerated(1) benign(0.005) TCGA-42-2590-01 1 240070820 240070820 C T CHRM3 Silent p.S23S 0.15 TCGA-42-2590-01 1 27124321 27124321 C G PIGV Missense_Mutation p.L490V 0.34 deleterious(0) probably_damaging(0.992) TCGA-42-2590-01 1 28891299 28891299 C T TRNAU1AP Silent p.P121P 0.18 TCGA-42-2590-01 20 37536564 37536564 C G PPP1R16B Missense_Mutation p.S338R 0.29 deleterious(0) probably_damaging(0.999) TCGA-42-2590-01 22 29724827 29724827 T C AP1B1 Missense_Mutation p.T945A 0.30 tolerated(0.86) benign(0.004) TCGA-42-2590-01 2 198949110 198949110 G A PLCL1 Missense_Mutation p.S290N 0.09 tolerated(0.23) benign(0.009) TCGA-42-2590-01 2 55252965 55252965 G A RTN4 Missense_Mutation p.P757L 0.21 deleterious(0) possibly_damaging(0.52) TCGA-42-2590-01 2 71043497 71043497 T A CLEC4F Missense_Mutation p.K339I 0.12 deleterious(0) benign(0.11) TCGA-42-2590-01 3 100096582 100096582 A G TOMM70A Silent p.D353D 0.08 TCGA-42-2590-01 3 111849273 111849273 T G GCSAM Intron 0.03 TCGA-42-2590-01 3 40353562 40353562 T C EIF1B 3'UTR 0.47 TCGA-42-2590-01 3 48609849 48609849 G A COL7A1 Silent p.A2314A 0.04 TCGA-42-2590-01 4 11401466 11401466 G A HS3ST1 Missense_Mutation p.P55L 0.24 deleterious(0) probably_damaging(1) TCGA-42-2590-01 4 41984081 41984081 A C DCAF4L1 Missense_Mutation p.Q91P 0.12 deleterious(0) benign(0.003) TCGA-42-2590-01 4 8307891 8307891 C A HTRA3 3'UTR 0.15 TCGA-42-2590-01 5 115177311 115177311 C A ATG12 5'UTR 0.15 TCGA-42-2590-01 5 180166171 180166171 C A OR2Y1 Silent p.V296V 0.30 TCGA-42-2590-01 5 80504181 80504181 T C RASGRF2 Missense_Mutation p.L1027P 0.15 deleterious(0) probably_damaging(0.998) TCGA-42-2590-01 6 31973505 31973505 G T C4A 3'Flank 0.53 TCGA-42-2590-01 6 66044888 66044888 T A EYS Missense_Mutation p.E584V 0.26 tolerated(0.25) probably_damaging(0.958) TCGA-42-2590-01 7 100479699 100479699 C A SRRT Missense_Mutation p.L142M 0.20 tolerated(0.25) benign(0.109) TCGA-42-2590-01 7 104747164 104747164 A G KMT2E Missense_Mutation p.Y931C 0.13 deleterious_low_confidence(0.04) possibly_damaging(0.759) TCGA-42-2590-01 7 115897388 115897388 A C TES Missense_Mutation p.Q373P 0.08 deleterious(0) probably_damaging(1) TCGA-42-2590-01 7 150217746 150217753 AAATGAAG - GIMAP7 Frame_Shift_Del p.E230* 0.62 TCGA-42-2590-01 7 24874146 24874146 G A OSBPL3 Silent p.L569L 0.07 TCGA-42-2590-01 7 6731854 6731854 G T ZNF12 Missense_Mutation p.P240H 0.40 tolerated(0.11) benign(0.426) TCGA-42-2590-01 7 99696885 99696885 C G MCM7 Intron 0.28 TCGA-42-2590-01 8 101300170 101300170 T C RNF19A Missense_Mutation p.K78R 0.07 tolerated_low_confidence(0.25) benign(0.004) TCGA-42-2590-01 8 42214856 42214856 G C POLB Missense_Mutation p.V166L 0.12 tolerated(0.64) benign(0.001) TCGA-42-2590-01 8 88885717 88885717 C T DCAF4L2 Silent p.A161A 0.24 TCGA-42-2590-01 9 136302926 136302926 G A ADAMTS13 Missense_Mutation p.R498H 0.68 deleterious(0) probably_damaging(0.989) TCGA-42-2590-01 9 89763745 89763745 G C C9orf170 Missense_Mutation p.A34P 0.34 tolerated_low_confidence(0.09) possibly_damaging(0.82) TCGA-42-2590-01 X 117032741 117032741 C T KLHL13 3'UTR 0.11 TCGA-42-2590-01 X 135638897 135638897 C G VGLL1 3'UTR 0.40 TCGA-42-2590-01 X 148044409 148044409 C A AFF2 Missense_Mutation p.T952N 0.34 tolerated(0.36) benign(0.008) TCGA-42-2590-01 X 149639721 149639721 C T MAMLD1 Nonsense_Mutation p.R601* 0.28 TCGA-42-2590-01 X 48682136 48682136 G A HDAC6 Missense_Mutation p.G1082R 0.14 deleterious(0.02) benign(0.263) TCGA-42-2590-01 X 9711702 9711702 G A GPR143 Missense_Mutation p.L224F 0.27 deleterious(0.01) probably_damaging(0.975) TCGA-42-2591-01 10 119003807 119003807 A G SLC18A2 Missense_Mutation p.I149M 0.50 deleterious(0.01) benign(0.243) TCGA-42-2591-01 10 123842938 123842938 G A TACC2 Missense_Mutation p.R308K 0.45 benign(0.034) TCGA-42-2591-01 10 50227631 50227631 C G VSTM4 3'UTR 0.83 TCGA-42-2591-01 11 121492915 121492915 G T SORL1 Missense_Mutation p.D2037Y 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-42-2591-01 11 121492916 121492916 A G SORL1 Missense_Mutation p.D2037G 0.36 tolerated(0.18) probably_damaging(0.999) TCGA-42-2591-01 11 4661045 4661045 C G OR51D1 Missense_Mutation p.P9A 0.82 tolerated(0.33) benign(0.02) TCGA-42-2591-01 11 60201361 60201361 C A MS4A5 Missense_Mutation p.Q155K 0.42 tolerated(0.99) benign(0.122) TCGA-42-2591-01 11 62286674 62286674 T C AHNAK Missense_Mutation p.K5072R 0.53 possibly_damaging(0.832) TCGA-42-2591-01 12 54676365 54676365 G T HNRNPA1 Missense_Mutation p.G198C 0.14 deleterious(0.03) unknown(0) TCGA-42-2591-01 12 99038483 99038483 T G IKBIP 5'UTR 1.00 TCGA-42-2591-01 13 39338457 39338457 G A FREM2 Silent p.T1760T 0.85 TCGA-42-2591-01 14 30068314 30068314 C T PRKD1 Silent p.R695R 0.31 TCGA-42-2591-01 15 20657723 20657723 C A HERC2P3 RNA 0.30 TCGA-42-2591-01 16 17211510 17211548 GATGGGCTGCCTGTTCGAGAAGGTCAGAGGCGCAACGAG - XYLT1 In_Frame_Del p.L838_I850del 0.64 TCGA-42-2591-01 16 24802935 24802935 C A TNRC6A Missense_Mutation p.S991Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-42-2591-01 16 30546003 30546003 C T ZNF747 5'UTR 0.32 TCGA-42-2591-01 16 46629506 46629506 T A SHCBP1 Silent p.S474S 0.37 TCGA-42-2591-01 16 86600879 86600879 C T FOXC2 5'UTR 0.47 TCGA-42-2591-01 17 18154772 18154772 G A FLII Missense_Mutation p.A468V 0.83 tolerated(0.41) benign(0.001) TCGA-42-2591-01 17 3649118 3649118 C T ITGAE Silent p.R753R 0.74 TCGA-42-2591-01 17 41276113 41276113 T C BRCA1 Translation_Start_Site p.M1? 0.93 deleterious(0) probably_damaging(0.969) TCGA-42-2591-01 17 6902279 6902279 G C ALOX12 Missense_Mutation p.E184Q 0.83 tolerated(0.07) possibly_damaging(0.875) TCGA-42-2591-01 17 74014216 74014216 A T EVPL Intron 0.56 TCGA-42-2591-01 17 7578203 7578203 C T TP53 Missense_Mutation p.V216M 0.80 deleterious(0) probably_damaging(1) TCGA-42-2591-01 17 78321283 78321283 G A RNF213 Missense_Mutation p.V3050M 0.89 benign(0.352) TCGA-42-2591-01 18 21743245 21743245 C G OSBPL1A Missense_Mutation p.R917S 0.79 deleterious(0) probably_damaging(0.997) TCGA-42-2591-01 18 64172451 64172451 G T CDH19 Missense_Mutation p.F639L 0.80 deleterious(0.01) possibly_damaging(0.678) TCGA-42-2591-01 18 7050767 7050767 G C LAMA1 Missense_Mutation p.P172A 0.81 deleterious(0.02) probably_damaging(1) TCGA-42-2591-01 19 19843878 19843878 G A ZNF14 5'UTR 0.43 TCGA-42-2591-01 19 36004015 36004015 A C DMKN Missense_Mutation p.I121M 0.37 deleterious(0) possibly_damaging(0.808) TCGA-42-2591-01 19 7620148 7620150 AGA - PNPLA6 In_Frame_Del p.K955del 0.94 TCGA-42-2591-01 1 12855836 12855836 C A PRAMEF1 Silent p.A372A 0.23 TCGA-42-2591-01 1 12921325 12921325 C A PRAMEF2 Silent p.G372G 0.12 TCGA-42-2591-01 1 153177535 153177535 C T LELP1 3'UTR 0.47 TCGA-42-2591-01 1 157067751 157067751 C A ETV3L Missense_Mutation p.Q172H 0.42 tolerated(0.07) benign(0.06) TCGA-42-2591-01 1 15821826 15821826 G T CASP9 Missense_Mutation p.D330E 0.40 deleterious(0) probably_damaging(0.998) TCGA-42-2591-01 1 161771867 161771867 T G ATF6 Silent p.P238P 0.51 TCGA-42-2591-01 1 169099302 169099310 GTCCTTCCC - ATP1B1 In_Frame_Del p.L209_V211del 0.28 TCGA-42-2591-01 1 19983391 19983391 G C MINOS1-NBL1 Silent p.V105V 0.53 TCGA-42-2591-01 1 205064070 205064070 C T RBBP5 Missense_Mutation p.D507N 0.83 deleterious(0) benign(0.077) TCGA-42-2591-01 1 205064071 205064071 C T RBBP5 Silent p.G506G 0.83 TCGA-42-2591-01 1 236906286 236906286 G T ACTN2 Nonsense_Mutation p.E400* 0.44 TCGA-42-2591-01 1 32627966 32627966 C T KPNA6 Missense_Mutation p.S251F 0.41 deleterious(0.02) possibly_damaging(0.873) TCGA-42-2591-01 1 46669016 46669016 C G LURAP1 5'UTR 0.48 TCGA-42-2591-01 1 54509155 54509155 G A TMEM59 Missense_Mutation p.T145I 0.35 tolerated(0.13) benign(0.406) TCGA-42-2591-01 1 902140 902140 G C PLEKHN1 Missense_Mutation p.G47A 0.58 tolerated(0.49) benign(0.098) TCGA-42-2591-01 1 95369073 95369073 G C CNN3 Missense_Mutation p.S22C 0.61 deleterious(0.02) benign(0.237) TCGA-42-2591-01 1 99772459 99772459 C T LPPR4 Missense_Mutation p.R729W 0.69 deleterious(0) probably_damaging(0.975) TCGA-42-2591-01 20 34089716 34089716 C T CEP250 Silent p.L1315L 0.37 TCGA-42-2591-01 20 58330315 58330315 C T PHACTR3 Missense_Mutation p.T146M 0.33 tolerated(0.27) benign(0.003) TCGA-42-2591-01 21 34635590 34635590 G A IFNAR2 Missense_Mutation p.A445T 0.40 tolerated(0.22) benign(0.143) TCGA-42-2591-01 21 36164573 36164573 G A RUNX1 Silent p.N434N 0.43 TCGA-42-2591-01 21 47722406 47722406 G T C21orf58 Missense_Mutation p.A269D 0.43 deleterious(0.02) probably_damaging(0.943) TCGA-42-2591-01 22 21347964 21347964 C A LZTR1 Missense_Mutation p.P425H 0.82 deleterious(0) probably_damaging(0.95) TCGA-42-2591-01 22 26776302 26776302 C A SEZ6L 3'UTR 0.80 TCGA-42-2591-01 2 128865555 128865566 TCAGTTTCTGTC - UGGT1 In_Frame_Del p.F107_S111delinsL 0.30 TCGA-42-2591-01 2 160803198 160803199 - T PLA2R1 Intron 0.39 TCGA-42-2591-01 2 201950406 201950406 A G NDUFB3 3'UTR 0.34 TCGA-42-2591-01 2 46808328 46808328 T G RHOQ 3'UTR 0.47 TCGA-42-2591-01 2 74593703 74593703 G A DCTN1 Silent p.V837V 0.06 TCGA-42-2591-01 2 84686349 84686349 G A SUCLG1 Silent p.V15V 0.45 TCGA-42-2591-01 2 9611541 9611541 A T CPSF3 Missense_Mutation p.K642N 0.43 tolerated(0.55) benign(0.008) TCGA-42-2591-01 3 126386139 126386139 A T NUP210P1 RNA 0.07 TCGA-42-2591-01 3 32031148 32031148 C A ZNF860 Missense_Mutation p.Q193K 0.07 deleterious(0.02) probably_damaging(0.952) TCGA-42-2591-01 3 48624491 48624491 C G COL7A1 Missense_Mutation p.D1064H 0.82 unknown(0) TCGA-42-2591-01 3 66460577 66460577 C T LRIG1 Missense_Mutation p.S304N 0.64 tolerated(0.07) benign(0.014) TCGA-42-2591-01 3 9594307 9594307 C G LHFPL4 Silent p.S19S 0.78 TCGA-42-2591-01 3 9935022 9935022 C A JAGN1 Missense_Mutation p.D171E 0.36 tolerated(0.09) benign(0.1) TCGA-42-2591-01 4 186291955 186291955 C T LRP2BP Missense_Mutation p.D273N 0.78 tolerated(0.06) benign(0.405) TCGA-42-2591-01 4 36075397 36075397 T C ARAP2 Missense_Mutation p.I1553V 0.43 tolerated(1) benign(0.004) TCGA-42-2591-01 4 46994890 46994890 T A GABRA4 Missense_Mutation p.S54C 0.44 deleterious(0.01) possibly_damaging(0.823) TCGA-42-2591-01 4 5564555 5564555 C T EVC2 3'UTR 0.73 TCGA-42-2591-01 4 90856203 90856203 G A MMRN1 Missense_Mutation p.E458K 0.79 tolerated(0.05) benign(0.021) TCGA-42-2591-01 5 178410092 178410092 A C GRM6 Missense_Mutation p.I752S 0.87 deleterious(0.04) benign(0.378) TCGA-42-2591-01 5 68413108 68413108 A C SLC30A5 Missense_Mutation p.S442R 0.15 deleterious(0) probably_damaging(0.998) TCGA-42-2591-01 6 137019684 137019684 C T MAP3K5 Missense_Mutation p.C250Y 0.78 tolerated(0.09) probably_damaging(0.999) TCGA-42-2591-01 6 158502243 158502243 C T SYNJ2 Silent p.A890A 0.77 TCGA-42-2591-01 6 33990586 33990586 T C GRM4 3'UTR 0.48 TCGA-42-2591-01 6 38791347 38791347 G C DNAH8 Missense_Mutation p.A1027P 0.30 benign(0.206) TCGA-42-2591-01 6 55119999 55119999 C T HCRTR2 Silent p.I156I 0.47 TCGA-42-2591-01 6 90062354 90062354 C A UBE2J1 5'UTR 0.64 TCGA-42-2591-01 6 97561812 97561812 G T KLHL32 Missense_Mutation p.V261F 0.80 deleterious(0.01) benign(0.145) TCGA-42-2591-01 7 22533386 22533386 C A STEAP1B Missense_Mutation p.A52S 0.04 tolerated_low_confidence(0.45) benign(0.012) TCGA-42-2591-01 7 72954225 72954225 C T BCL7B Silent p.Q141Q 0.43 TCGA-42-2591-01 7 94040248 94040248 C T COL1A2 Silent p.G415G 0.45 TCGA-42-2591-01 8 10390534 10390534 G C PRSS55 Missense_Mutation p.K239N 0.44 tolerated(0.11) benign(0.342) TCGA-42-2591-01 8 69445372 69445372 A G C8orf34 Missense_Mutation p.M365V 0.44 tolerated(0.09) possibly_damaging(0.839) TCGA-42-2591-01 9 103108399 103108399 G A TEX10 Silent p.S364S 0.32 TCGA-42-2591-01 9 34126488 34126488 A C DCAF12 5'UTR 0.39 TCGA-42-2591-01 9 69423385 69423385 A C ANKRD20A4 Missense_Mutation p.K561Q 0.15 deleterious(0) possibly_damaging(0.851) TCGA-42-2591-01 9 71869425 71869425 A T AL358113.1 Missense_Mutation p.M73K 0.27 unknown(0) TCGA-42-2591-01 9 72920249 72920249 A G SMC5 Silent p.Q517Q 0.28 TCGA-42-2591-01 9 73002792 73002792 A C KLF9 Missense_Mutation p.F212C 0.32 deleterious(0) probably_damaging(1) TCGA-42-2591-01 X 102931234 102931234 T G MORF4L2 Missense_Mutation p.Y241S 0.41 tolerated(0.06) possibly_damaging(0.767) TCGA-42-2591-01 X 123040873 123040873 G C XIAP Missense_Mutation p.E446Q 0.45 deleterious(0) possibly_damaging(0.897) TCGA-42-2591-01 X 123518243 123518243 T A TENM1 Missense_Mutation p.S2180C 0.35 deleterious(0) possibly_damaging(0.848) TCGA-42-2591-01 X 151808926 151808926 A G GABRQ Silent p.G79G 0.42 TCGA-42-2591-01 X 40540156 40540156 T C MED14 Missense_Mutation p.I822V 0.44 tolerated(0.28) benign(0.018) TCGA-42-2591-01 X 51151131 51151131 C T CXorf67 Silent p.I421I 0.45 TCGA-42-2591-01 X 69249373 69249373 A T EDA Silent p.G242G 0.41 TCGA-42-2591-01 X 69671761 69671761 C G DLG3 Missense_Mutation p.L344V 0.44 tolerated(0.12) benign(0.012) TCGA-42-2591-01 X 92964358 92964358 C T FAM133A 5'UTR 0.37 TCGA-42-2593-01 10 29775421 29775421 T C SVIL Silent p.Q1517Q 0.31 TCGA-42-2593-01 10 82098173 82098178 CAAAAA - DYDC1 Intron 0.25 TCGA-42-2593-01 10 85991460 85991460 G C LRIT1 3'UTR 0.37 TCGA-42-2593-01 11 64011488 64011488 G A FKBP2 Missense_Mutation p.R139Q 0.27 tolerated(0.07) benign(0.019) TCGA-42-2593-01 11 64878880 64878880 G A VPS51 Missense_Mutation p.G724R 0.54 deleterious(0) probably_damaging(1) TCGA-42-2593-01 11 77387912 77387912 C T RSF1 Missense_Mutation p.R1089Q 0.22 deleterious(0) probably_damaging(0.996) TCGA-42-2593-01 12 11546076 11546076 G A PRB2 Silent p.G312G 0.06 TCGA-42-2593-01 12 43833799 43833799 A G ADAMTS20 Silent p.N788N 0.03 TCGA-42-2593-01 13 77657196 77657196 G A MYCBP2 Silent p.S3631S 0.28 TCGA-42-2593-01 14 34269275 34269275 G A NPAS3 Missense_Mutation p.E588K 0.44 tolerated(0.15) possibly_damaging(0.905) TCGA-42-2593-01 14 61180436 61180436 G C SIX4 Missense_Mutation p.P679A 0.37 deleterious_low_confidence(0.01) benign(0.02) TCGA-42-2593-01 14 73961952 73961952 A G HEATR4 Missense_Mutation p.L922S 0.34 deleterious(0) possibly_damaging(0.47) TCGA-42-2593-01 16 48221290 48221290 G - ABCC11 Frame_Shift_Del p.L919Ffs*2 0.33 TCGA-42-2593-01 17 3788931 3788931 T C CAMKK1 Silent p.V17V 0.53 TCGA-42-2593-01 17 48166769 48166769 C T ITGA3 3'UTR 0.24 TCGA-42-2593-01 17 56344915 56344915 C T LPO Silent p.G633G 0.20 TCGA-42-2593-01 17 7577123 7577123 A C TP53 Missense_Mutation p.V272G 0.77 deleterious(0) probably_damaging(1) TCGA-42-2593-01 18 19761469 19761469 C A GATA6 Missense_Mutation p.T453N 0.03 deleterious(0.01) probably_damaging(0.999) TCGA-42-2593-01 18 55233782 55233782 G A FECH Silent p.Y171Y 0.44 TCGA-42-2593-01 19 40903700 40903700 G A PRX Missense_Mutation p.R187C 0.21 deleterious(0) possibly_damaging(0.835) TCGA-42-2593-01 19 41509981 41509981 G A CYP2B6 Missense_Mutation p.A83T 0.16 tolerated(0.15) benign(0.338) TCGA-42-2593-01 19 51647876 51647876 C T SIGLEC7 Missense_Mutation p.T216I 0.26 deleterious(0.02) probably_damaging(0.986) TCGA-42-2593-01 19 6928211 6928211 A G EMR1 Missense_Mutation p.T760A 0.37 tolerated(0.39) benign(0.007) TCGA-42-2593-01 1 11898441 11898441 C T CLCN6 Missense_Mutation p.P782L 0.20 deleterious(0) probably_damaging(1) TCGA-42-2593-01 1 142803804 142803804 A T RP11-423O2.5 RNA 0.35 TCGA-42-2593-01 1 157069012 157069012 G C ETV3L Missense_Mutation p.P73A 0.27 deleterious(0) probably_damaging(1) TCGA-42-2593-01 1 207238390 207238390 G A PFKFB2 Missense_Mutation p.V173I 0.21 probably_damaging(0.998) TCGA-42-2593-01 1 224377960 224377960 A G DEGS1 Missense_Mutation p.N255S 0.19 deleterious(0.05) possibly_damaging(0.571) TCGA-42-2593-01 1 28607256 28607256 G A SESN2 Silent p.A462A 0.27 TCGA-42-2593-01 1 42046666 42046666 A G HIVEP3 Missense_Mutation p.L1268P 0.25 probably_damaging(0.999) TCGA-42-2593-01 20 34457439 34457439 C T PHF20 Silent p.V296V 0.17 TCGA-42-2593-01 20 35234264 35234264 C T C20orf24 5'UTR 0.22 TCGA-42-2593-01 20 3660138 3660138 C T ADAM33 Splice_Site p.X59_splice 0.21 TCGA-42-2593-01 20 61527906 61527906 G A DIDO1 Silent p.S677S 0.16 TCGA-42-2593-01 21 11058161 11058161 A T BAGE2 Intron 0.10 TCGA-42-2593-01 21 35467316 35467316 C T SLC5A3 5'UTR 0.36 TCGA-42-2593-01 2 103324823 103324823 C G SLC9A2 Missense_Mutation p.Q772E 0.29 tolerated(1) benign(0) TCGA-42-2593-01 2 118582162 118582162 C A DDX18 Missense_Mutation p.L362I 0.26 deleterious(0) possibly_damaging(0.901) TCGA-42-2593-01 2 231371125 231371125 C T SP100 Missense_Mutation p.R660C 0.17 deleterious(0) probably_damaging(0.988) TCGA-42-2593-01 2 233748704 233748704 G A NGEF Missense_Mutation p.R530W 0.02 deleterious(0) probably_damaging(0.988) TCGA-42-2593-01 2 74657454 74657454 T C RTKN Missense_Mutation p.E157G 0.32 tolerated(0.4) benign(0.001) TCGA-42-2593-01 3 119348435 119348435 C A PLA1A 3'UTR 0.25 TCGA-42-2593-01 3 127318341 127318341 C T MCM2 Silent p.L63L 0.20 TCGA-42-2593-01 3 137717861 137717861 C T CLDN18 Missense_Mutation p.R51C 0.19 deleterious(0.01) possibly_damaging(0.761) TCGA-42-2593-01 3 151545797 151545797 G T AADAC Missense_Mutation p.R346I 0.21 deleterious(0) probably_damaging(0.999) TCGA-42-2593-01 3 182584152 182584152 C T ATP11B Nonsense_Mutation p.Q514* 0.21 TCGA-42-2593-01 4 110650915 110650915 G A PLA2G12A Silent p.A17A 0.06 TCGA-42-2593-01 5 1278860 1278860 C T TERT Missense_Mutation p.V728I 0.19 deleterious(0.01) possibly_damaging(0.85) TCGA-42-2593-01 5 140764413 140764413 C T PCDHGA7 Silent p.H649H 0.26 TCGA-42-2593-01 5 66478755 66478755 A T CD180 Missense_Mutation p.L639Q 0.33 deleterious(0) possibly_damaging(0.761) TCGA-42-2593-01 6 100390836 100390836 G A MCHR2 Silent p.D192D 0.60 TCGA-42-2593-01 6 292448 292448 C A DUSP22 5'UTR 0.12 TCGA-42-2593-01 6 30595641 30595641 G A ATAT1 Missense_Mutation p.A80T 0.14 deleterious(0.02) possibly_damaging(0.543) TCGA-42-2593-01 6 32006192 32006192 G A CYP21A2 5'UTR 0.18 TCGA-42-2593-01 6 43107207 43107207 C T PTK7 Missense_Mutation p.T529M 0.17 deleterious(0.01) probably_damaging(0.987) TCGA-42-2593-01 6 70098602 70098602 C G BAI3 Missense_Mutation p.P1463R 0.19 tolerated(0.26) benign(0.073) TCGA-42-2593-01 7 29111504 29111504 G A CPVL Missense_Mutation p.A250V 0.27 deleterious(0.04) possibly_damaging(0.908) TCGA-42-2593-01 8 195847 195847 C A ZNF596 Missense_Mutation p.P334T 0.40 deleterious(0) benign(0.146) TCGA-42-2593-01 8 38287212 38287212 C T FGFR1 Missense_Mutation p.V149I 0.35 tolerated(0.33) benign(0.053) TCGA-42-2593-01 9 101017850 101017850 A C TBC1D2 5'UTR 0.37 TCGA-42-2593-01 9 133333935 133333935 C T ASS1 Missense_Mutation p.R108W 0.35 deleterious(0.04) benign(0.009) TCGA-42-2593-01 9 19058886 19058886 C G HAUS6 Missense_Mutation p.V627L 0.36 deleterious(0.05) benign(0.392) TCGA-42-2593-01 9 90502053 90502053 G A SPATA31E1 Missense_Mutation p.R884Q 0.05 tolerated(0.33) benign(0.192) TCGA-42-2593-01 X 151336868 151336868 G A GABRA3 Silent p.T437T 0.03 TCGA-59-2372-01 10 134158114 134158114 G C LRRC27 Missense_Mutation p.W171C 0.07 tolerated(1) benign(0.439) TCGA-59-2372-01 10 48413728 48413728 C T GDF2 Silent p.V380V 0.27 TCGA-59-2372-01 10 54048544 54048544 G T PRKG1 Missense_Mutation p.D590Y 0.24 deleterious(0) probably_damaging(0.994) TCGA-59-2372-01 10 55944984 55944984 T A PCDH15 Silent p.S450S 0.10 TCGA-59-2372-01 11 123994127 123994127 T C VWA5A Missense_Mutation p.Y329H 0.24 deleterious(0) possibly_damaging(0.899) TCGA-59-2372-01 11 14665916 14665916 G C PDE3B Missense_Mutation p.E99Q 0.53 tolerated(0.55) benign(0.009) TCGA-59-2372-01 12 123332626 123332626 G T HIP1R Nonsense_Mutation p.E48* 0.18 TCGA-59-2372-01 12 123892121 123892121 C T SETD8 Silent p.H310H 0.17 TCGA-59-2372-01 12 43826516 43826516 T A ADAMTS20 Missense_Mutation p.Q940L 0.21 tolerated(0.23) benign(0.017) TCGA-59-2372-01 12 49523068 49523068 C - TUBA1B Frame_Shift_Del p.G111Afs*71 0.33 TCGA-59-2372-01 12 52306961 52306961 G A ACVRL1 Missense_Mutation p.R47Q 0.19 tolerated(1) benign(0.001) TCGA-59-2372-01 12 52710722 52710722 A G KRT83 Missense_Mutation p.I279T 0.20 deleterious(0.01) possibly_damaging(0.474) TCGA-59-2372-01 12 52842689 52842689 C T KRT6B Silent p.E380E 0.04 TCGA-59-2372-01 12 6646542 6646542 G C GAPDH Missense_Mutation p.V171L 0.18 tolerated_low_confidence(0.06) benign(0.005) TCGA-59-2372-01 12 93247726 93247726 G C EEA1 Missense_Mutation p.A124G 0.16 tolerated(0.44) benign(0) TCGA-59-2372-01 12 93793057 93793057 C G NUDT4 Missense_Mutation p.P150A 0.08 tolerated(0.43) benign(0.004) TCGA-59-2372-01 13 103450935 103450935 G A KDELC1 Missense_Mutation p.P29L 0.93 tolerated(0.06) probably_damaging(0.951) TCGA-59-2372-01 13 115030666 115030666 G C CDC16 Missense_Mutation p.M518I 0.47 tolerated(0.12) benign(0.02) TCGA-59-2372-01 13 21553914 21553914 C T LATS2 Nonsense_Mutation p.W896* 0.45 TCGA-59-2372-01 13 28611346 28611346 T C FLT3 Missense_Mutation p.K429E 0.39 deleterious(0) probably_damaging(0.991) TCGA-59-2372-01 13 43180995 43180995 C G TNFSF11 Missense_Mutation p.L299V 0.45 tolerated(0.25) probably_damaging(1) TCGA-59-2372-01 14 24845700 24845700 G T NFATC4 Missense_Mutation p.G816W 0.34 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-59-2372-01 14 63246582 63246582 G A KCNH5 Missense_Mutation p.A628V 0.91 tolerated(0.07) benign(0.341) TCGA-59-2372-01 14 71513768 71513768 A G PCNX Missense_Mutation p.N1369S 0.15 tolerated(0.15) possibly_damaging(0.867) TCGA-59-2372-01 15 43939654 43939654 G T CATSPER2 Missense_Mutation p.Q53K 0.28 tolerated(0.43) benign(0.313) TCGA-59-2372-01 15 44900695 44900695 A C SPG11 Missense_Mutation p.C1134G 0.25 tolerated(0.37) possibly_damaging(0.765) TCGA-59-2372-01 15 64455191 64455191 G A PPIB 5'UTR 0.67 TCGA-59-2372-01 15 78452454 78452454 G A IDH3A Silent p.E65E 0.19 TCGA-59-2372-01 15 79058719 79058719 C A ADAMTS7 Missense_Mutation p.R1178S 0.24 tolerated(0.6) benign(0.001) TCGA-59-2372-01 15 93010509 93010509 G A ST8SIA2 3'UTR 0.16 TCGA-59-2372-01 16 10574756 10574756 G T ATF7IP2 Nonsense_Mutation p.E524* 0.15 TCGA-59-2372-01 16 3014558 3014558 C G KREMEN2 Missense_Mutation p.L13V 0.19 tolerated_low_confidence(0.11) benign(0.066) TCGA-59-2372-01 16 4475904 4475904 C A DNAJA3 Missense_Mutation p.R8S 0.16 deleterious_low_confidence(0.01) probably_damaging(0.96) TCGA-59-2372-01 16 58538308 58538308 C T NDRG4 Silent p.S150S 0.20 TCGA-59-2372-01 16 69148781 69148781 C T HAS3 Missense_Mutation p.T425I 0.23 tolerated(1) benign(0.002) TCGA-59-2372-01 16 69693665 69693665 C G NFAT5 Missense_Mutation p.A411G 0.21 possibly_damaging(0.482) TCGA-59-2372-01 17 11572543 11572543 G A DNAH9 Missense_Mutation p.R965Q 0.43 possibly_damaging(0.609) TCGA-59-2372-01 17 28772784 28772784 C A CPD Silent p.S873S 0.34 TCGA-59-2372-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.96 tolerated(0.11) benign(0.308) TCGA-59-2372-01 19 15917978 15917978 G A OR10H1 Silent p.I290I 0.51 TCGA-59-2372-01 19 46997806 46997806 G A PNMAL2 Missense_Mutation p.P306L 0.89 tolerated(0.19) benign(0.005) TCGA-59-2372-01 19 54417766 54417766 G A CACNG7 Missense_Mutation p.G70D 0.48 deleterious(0.02) probably_damaging(1) TCGA-59-2372-01 19 56424337 56424337 A C NLRP13 Silent p.A282A 0.07 TCGA-59-2372-01 1 154931827 154931827 G A PYGO2 Nonsense_Mutation p.Q217* 0.08 TCGA-59-2372-01 1 160057364 160057364 C T KCNJ9 Silent p.G313G 0.05 TCGA-59-2372-01 1 161127060 161127060 T G UFC1 Missense_Mutation p.W70G 0.27 deleterious(0) probably_damaging(0.995) TCGA-59-2372-01 1 179063255 179063255 G C TOR3A Missense_Mutation p.E282D 0.17 tolerated(0.18) benign(0.071) TCGA-59-2372-01 1 179858456 179858456 G T TOR1AIP1 Missense_Mutation p.D188Y 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-59-2372-01 1 185109229 185109229 C A TRMT1L Missense_Mutation p.V329L 0.30 tolerated(0.85) benign(0.004) TCGA-59-2372-01 1 208215600 208215600 T G PLXNA2 Missense_Mutation p.S1377R 0.21 tolerated(0.11) possibly_damaging(0.486) TCGA-59-2372-01 1 212911630 212911630 T G NSL1 3'UTR 0.17 TCGA-59-2372-01 1 235345708 235345708 C G ARID4B Missense_Mutation p.K842N 0.17 tolerated_low_confidence(0.14) probably_damaging(0.996) TCGA-59-2372-01 1 242035520 242035520 C T EXO1 Missense_Mutation p.T485I 0.28 deleterious(0) benign(0.117) TCGA-59-2372-01 1 39913465 39913465 G A MACF1 Silent p.L4562L 0.07 TCGA-59-2372-01 1 64643492 64643492 G A ROR1 Missense_Mutation p.G590R 0.36 tolerated(0.25) benign(0.055) TCGA-59-2372-01 1 7723535 7723535 G C CAMTA1 Missense_Mutation p.E310Q 0.19 deleterious(0.02) probably_damaging(0.993) TCGA-59-2372-01 1 89655818 89655818 A G GBP4 Missense_Mutation p.L367P 0.19 deleterious(0) probably_damaging(1) TCGA-59-2372-01 20 2575584 2575584 C T TMC2 Silent p.F349F 0.05 TCGA-59-2372-01 20 34219904 34219904 T A CPNE1 Missense_Mutation p.Q172L 0.44 tolerated(0.11) possibly_damaging(0.481) TCGA-59-2372-01 20 3845437 3845437 T G MAVS Splice_Site p.X386_splice 0.22 TCGA-59-2372-01 20 57570544 57570545 CT - CTSZ 3'UTR 0.63 TCGA-59-2372-01 20 61512109 61512109 G A DIDO1 Silent p.T1733T 0.27 TCGA-59-2372-01 20 9402041 9402041 G T PLCB4 Missense_Mutation p.R739L 0.17 deleterious(0) probably_damaging(0.999) TCGA-59-2372-01 21 11049449 11049449 C T BAGE2 Splice_Site 0.08 TCGA-59-2372-01 21 40670383 40670383 C G BRWD1 Missense_Mutation p.R108S 0.42 deleterious(0.02) probably_damaging(0.942) TCGA-59-2372-01 21 46595935 46595935 C G ADARB1 Missense_Mutation p.P107A 0.10 deleterious(0) probably_damaging(0.981) TCGA-59-2372-01 22 20383893 20383893 G C AC023490.1 3'Flank 0.44 TCGA-59-2372-01 22 29735018 29735018 G A AP1B1 Silent p.G708G 0.93 TCGA-59-2372-01 22 37882265 37882265 C T MFNG 5'UTR 0.32 TCGA-59-2372-01 22 38881982 38881982 T C DDX17 Silent p.Q718Q 0.96 TCGA-59-2372-01 22 41573070 41573070 C T EP300 Silent p.L1785L 0.08 TCGA-59-2372-01 2 114489221 114489221 C T SLC35F5 Missense_Mutation p.G309R 0.71 tolerated(0.05) probably_damaging(0.951) TCGA-59-2372-01 2 157352564 157352564 G A GPD2 Silent p.L37L 0.23 TCGA-59-2372-01 2 210569215 210569215 A T MAP2 Intron 0.12 TCGA-59-2372-01 2 223168522 223168522 C G CCDC140 5'UTR 0.40 TCGA-59-2372-01 2 224866605 224866605 G C SERPINE2 Missense_Mutation p.L17V 0.26 deleterious(0.04) benign(0.024) TCGA-59-2372-01 2 27873071 27873071 A T GPN1 3'UTR 0.21 TCGA-59-2372-01 2 70933508 70933508 C T ADD2 Silent p.S11S 0.25 TCGA-59-2372-01 2 99614684 99614684 C G TSGA10 Missense_Mutation p.E691D 0.22 tolerated(0.1) benign(0.022) TCGA-59-2372-01 3 167293788 167293788 G A WDR49 Missense_Mutation p.A135V 0.03 tolerated(0.13) benign(0.007) TCGA-59-2372-01 3 179458107 179458107 A G USP13 Missense_Mutation p.N443D 0.03 deleterious(0.04) probably_damaging(0.992) TCGA-59-2372-01 4 156864417 156864417 C T CTSO Splice_Site p.X46_splice 0.22 TCGA-59-2372-01 4 20731653 20731653 G T KCNIP4 3'UTR 0.33 TCGA-59-2372-01 4 77700128 77700128 C T SHROOM3 Missense_Mutation p.T1930M 0.50 deleterious(0.03) possibly_damaging(0.627) TCGA-59-2372-01 5 134364621 134364621 C T PITX1 Missense_Mutation p.G265S 0.10 tolerated(0.06) possibly_damaging(0.457) TCGA-59-2372-01 5 137475672 137475672 A G BRD8 3'UTR 0.22 TCGA-59-2372-01 5 140590003 140590003 G A PCDHB12 Silent p.A508A 0.09 TCGA-59-2372-01 5 147286085 147286085 G A C5orf46 5'Flank 0.06 TCGA-59-2372-01 5 150678161 150678161 C T SLC36A3 Missense_Mutation p.G71D 0.28 deleterious(0) probably_damaging(0.993) TCGA-59-2372-01 5 177419746 177419746 G T PROP1 Silent p.L215L 0.18 TCGA-59-2372-01 5 77477334 77477334 A C AP3B1 Silent p.A313A 0.23 TCGA-59-2372-01 5 82937415 82937415 C A HAPLN1 Missense_Mutation p.R322I 0.35 deleterious(0) probably_damaging(0.999) TCGA-59-2372-01 6 144783805 144783805 C G UTRN Missense_Mutation p.L957V 0.56 tolerated(0.14) benign(0.314) TCGA-59-2372-01 6 154489077 154489077 C A IPCEF1 Missense_Mutation p.R361L 0.88 deleterious(0) probably_damaging(0.977) TCGA-59-2372-01 6 26451915 26451915 T C BTN3A3 Missense_Mutation p.L344P 0.21 deleterious(0) probably_damaging(0.998) TCGA-59-2372-01 6 47754322 47754322 G A OPN5 Missense_Mutation p.A68T 0.20 tolerated(0.13) possibly_damaging(0.772) TCGA-59-2372-01 7 100680734 100680734 A G MUC17 Missense_Mutation p.S2013G 0.23 probably_damaging(0.983) TCGA-59-2372-01 7 123593871 123593871 G A SPAM1 Missense_Mutation p.A83T 0.15 tolerated(0.18) benign(0.067) TCGA-59-2372-01 7 127484381 127484381 A G SND1 Missense_Mutation p.N416S 0.08 tolerated(0.16) benign(0.008) TCGA-59-2372-01 7 150937197 150937197 C A SMARCD3 Splice_Site p.X391_splice 0.20 TCGA-59-2372-01 7 5336737 5336737 C T SLC29A4 Missense_Mutation p.R264W 0.36 tolerated(0.06) probably_damaging(0.93) TCGA-59-2372-01 7 64167243 64167243 C T ZNF107 Silent p.P187P 0.26 TCGA-59-2372-01 7 73152009 73152009 G C ABHD11 Missense_Mutation p.S115R 0.26 deleterious(0) benign(0.378) TCGA-59-2372-01 8 17400910 17400910 C T SLC7A2 Missense_Mutation p.T61I 0.26 deleterious(0.02) benign(0.012) TCGA-59-2372-01 8 2050535 2050535 G C MYOM2 Missense_Mutation p.D900H 0.33 tolerated(0.07) possibly_damaging(0.738) TCGA-59-2372-01 8 41545726 41545726 C T ANK1 Silent p.Q1443Q 0.72 TCGA-59-2372-01 9 111624682 111624682 C T ACTL7A Missense_Mutation p.A27V 0.52 tolerated_low_confidence(0.44) benign(0) TCGA-59-2372-01 9 125946542 125946542 T C STRBP 5'UTR 0.50 TCGA-59-2372-01 9 126144764 126144764 C A DENND1A Missense_Mutation p.K659N 0.90 tolerated(0.08) benign(0.097) TCGA-59-2372-01 9 133579333 133579333 C T EXOSC2 3'UTR 0.36 TCGA-59-2372-01 9 136341446 136341446 C G SLC2A6 Missense_Mutation p.E159Q 0.47 deleterious(0) probably_damaging(1) TCGA-59-2372-01 9 136598970 136598970 G A SARDH Missense_Mutation p.T109M 0.46 deleterious(0) probably_damaging(0.997) TCGA-59-2372-01 X 131188771 131188771 T G MST4 Missense_Mutation p.I52S 0.51 deleterious(0) probably_damaging(1) TCGA-59-2372-01 X 153418474 153418474 G C OPN1LW Missense_Mutation p.K157N 0.67 deleterious(0.01) probably_damaging(0.976) TCGA-59-2372-01 X 153881764 153881764 C T CTAG2 Missense_Mutation p.G9E 0.38 deleterious_low_confidence(0) unknown(0) TCGA-59-2372-01 X 49851437 49851437 G A CLCN5 Silent p.P489P 0.36 TCGA-59-A5PD-01 10 112342384 112342384 C A SMC3 Missense_Mutation p.A263E 0.50 deleterious(0.01) benign(0.356) TCGA-59-A5PD-01 10 114198135 114198135 G C ZDHHC6 Missense_Mutation p.L232V 0.43 tolerated(0.3) benign(0.256) TCGA-59-A5PD-01 10 119044635 119044635 T C PDZD8 Missense_Mutation p.I537V 0.14 tolerated_low_confidence(0.2) benign(0.002) TCGA-59-A5PD-01 10 121587337 121587337 G A INPP5F 3'UTR 0.22 TCGA-59-A5PD-01 10 123843486 123843486 G T TACC2 Missense_Mutation p.A491S 0.51 benign(0.37) TCGA-59-A5PD-01 10 13225034 13225034 G A MCM10 Silent p.T345T 0.26 TCGA-59-A5PD-01 10 134980937 134980937 A T KNDC1 Missense_Mutation p.E52V 0.12 deleterious(0) possibly_damaging(0.788) TCGA-59-A5PD-01 10 21169770 21169770 G T NEBL Missense_Mutation p.P145T 0.28 deleterious(0.04) possibly_damaging(0.806) TCGA-59-A5PD-01 10 33468447 33468456 GACACACTAC AT NRP1 3'UTR 0.39 TCGA-59-A5PD-01 10 96698556 96698556 T A CYP2C9 Silent p.I39I 0.30 TCGA-59-A5PD-01 10 98745452 98745452 A C C10orf12 3'UTR 0.20 TCGA-59-A5PD-01 11 123065758 123065758 C G CLMP 5'UTR 0.57 TCGA-59-A5PD-01 11 124016013 124016013 A T VWA5A Nonsense_Mutation p.K742* 0.60 TCGA-59-A5PD-01 11 128710111 128710111 C T KCNJ1 Missense_Mutation p.V29I 0.69 tolerated(0.24) benign(0) TCGA-59-A5PD-01 11 130784235 130784235 G C SNX19 Missense_Mutation p.R534G 0.58 deleterious(0) probably_damaging(0.982) TCGA-59-A5PD-01 11 134217273 134217273 C T GLB1L2 Silent p.T168T 0.65 TCGA-59-A5PD-01 11 43380494 43380494 G - TTC17 5'UTR 0.58 TCGA-59-A5PD-01 11 46406713 46406713 C T CHRM4 Silent p.R465R 0.49 TCGA-59-A5PD-01 11 55433284 55433284 G A OR4C6 Silent p.A214A 0.19 TCGA-59-A5PD-01 11 61197340 61197340 A T CPSF7 5'UTR 0.58 TCGA-59-A5PD-01 11 61555402 61555402 C T MYRF 3'UTR 0.16 TCGA-59-A5PD-01 11 63668470 63668476 GACTCGC TGG MARK2 Frame_Shift_Del p.D344Wfs*10 0.39 TCGA-59-A5PD-01 11 6589776 6589776 G C DNHD1 Missense_Mutation p.V4211L 0.25 benign(0.015) TCGA-59-A5PD-01 11 66327696 66327696 C T CTSF 3'Flank 0.58 TCGA-59-A5PD-01 11 71728702 71728702 G C NUMA1 Intron 0.35 TCGA-59-A5PD-01 11 9160540 9160540 C A DENND5A 3'UTR 0.31 TCGA-59-A5PD-01 11 93469313 93469335 CATTCATGATCCTGTCACATTTT - TAF1D Missense_Mutation 0.44 TCGA-59-A5PD-01 11 94924639 94924639 G C SESN3 Missense_Mutation p.R91G 0.54 deleterious(0) probably_damaging(0.935) TCGA-59-A5PD-01 12 124415068 124415068 C T DNAH10 Silent p.N4126N 0.67 TCGA-59-A5PD-01 12 132589474 132589474 G A EP400NL Silent p.T171T 0.33 TCGA-59-A5PD-01 12 48533675 48533675 G T PFKM Missense_Mutation p.V462F 0.18 tolerated(0.68) possibly_damaging(0.562) TCGA-59-A5PD-01 12 49658892 49658892 G T TUBA1C 5'UTR 0.62 TCGA-59-A5PD-01 12 52284545 52284545 A G ANKRD33 Missense_Mutation p.Q272R 0.72 tolerated(0.12) possibly_damaging(0.888) TCGA-59-A5PD-01 12 53809022 53809022 C T SP1 3'Flank 0.69 TCGA-59-A5PD-01 12 70048664 70048683 CAGGTCCTAGAACTTGGTGG - BEST3 3'UTR 0.23 TCGA-59-A5PD-01 12 81111153 81111153 A C MYF5 Missense_Mutation p.E104A 0.34 deleterious(0) possibly_damaging(0.517) TCGA-59-A5PD-01 13 115092469 115092469 C T CHAMP1 3'UTR 0.29 TCGA-59-A5PD-01 13 50071321 50071321 A C PHF11 Intron 0.59 TCGA-59-A5PD-01 14 101347943 101347943 G C RTL1 Missense_Mutation p.N1061K 0.74 deleterious_low_confidence(0.04) benign(0.109) TCGA-59-A5PD-01 14 53619098 53619098 C G DDHD1 Missense_Mutation p.S240T 0.67 tolerated(0.34) benign(0.038) TCGA-59-A5PD-01 14 55310314 55310314 T C GCH1 3'UTR 0.27 TCGA-59-A5PD-01 14 55819652 55819652 A G FBXO34 3'UTR 0.51 TCGA-59-A5PD-01 14 74193403 74193403 G A ELMSAN1 Silent p.D771D 0.41 TCGA-59-A5PD-01 14 92790165 92790165 G C SLC24A4 5'UTR 0.70 TCGA-59-A5PD-01 15 100339988 100339988 T A DNM1P46 RNA 0.56 TCGA-59-A5PD-01 15 31294019 31294019 A T TRPM1 3'UTR 0.29 TCGA-59-A5PD-01 15 45467450 45467450 A G SHF Missense_Mutation p.W207R 0.15 deleterious(0) probably_damaging(0.998) TCGA-59-A5PD-01 15 48495320 48495320 G A CTXN2 3'UTR 0.07 TCGA-59-A5PD-01 15 48495535 48495535 C T CTXN2 3'UTR 0.29 TCGA-59-A5PD-01 15 51988186 51988186 T C SCG3 Missense_Mutation p.L328P 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-59-A5PD-01 15 59516990 59516990 G C MYO1E Missense_Mutation p.H225Q 0.34 tolerated(1) benign(0) TCGA-59-A5PD-01 15 79585970 79585970 A C ANKRD34C Missense_Mutation p.E115A 0.23 deleterious(0.01) probably_damaging(0.932) TCGA-59-A5PD-01 15 81241208 81241208 C G KIAA1199 Missense_Mutation p.H1343Q 0.21 tolerated(0.56) benign(0.042) TCGA-59-A5PD-01 15 85164346 85164346 A C ZSCAN2 Missense_Mutation p.Q307P 0.27 tolerated(0.13) benign(0.395) TCGA-59-A5PD-01 15 85165957 85165957 A T ZSCAN2 3'UTR 0.42 TCGA-59-A5PD-01 15 90233911 90233911 C A PEX11A 5'UTR 0.48 TCGA-59-A5PD-01 15 91838208 91838208 C T SV2B 3'UTR 0.21 TCGA-59-A5PD-01 16 11785151 11785151 G C TXNDC11 Missense_Mutation p.T632S 0.36 tolerated(0.49) benign(0.219) TCGA-59-A5PD-01 16 1400842 1400842 G A TSR3 Silent p.C164C 0.15 TCGA-59-A5PD-01 16 19451395 19451395 A G TMC5 Missense_Mutation p.E12G 0.37 tolerated_low_confidence(0.14) benign(0.006) TCGA-59-A5PD-01 16 28838284 28838284 G A ATXN2L Missense_Mutation p.D240N 0.31 tolerated(0.21) benign(0.021) TCGA-59-A5PD-01 16 318873 318873 C G ITFG3 Missense_Mutation p.R516G 0.27 deleterious_low_confidence(0.05) benign(0) TCGA-59-A5PD-01 16 4910837 4910837 C G UBN1 Missense_Mutation p.L282V 0.62 tolerated(0.43) benign(0.045) TCGA-59-A5PD-01 16 67190479 67190479 A G TRADD Missense_Mutation p.S29P 0.26 tolerated(0.3) probably_damaging(0.995) TCGA-59-A5PD-01 16 71686801 71686801 T A PHLPP2 Silent p.A903A 0.31 TCGA-59-A5PD-01 16 72012215 72012215 C G PKD1L3 RNA 0.31 TCGA-59-A5PD-01 16 778950 778950 G C HAGHL Intron 0.21 TCGA-59-A5PD-01 16 87742983 87742983 G A KLHDC4 Silent p.Y445Y 0.16 TCGA-59-A5PD-01 17 16706572 16706572 G T CCDC144A 3'UTR 0.62 TCGA-59-A5PD-01 17 28512552 28512552 C G NSRP1 Missense_Mutation p.Q513E 0.25 tolerated(0.2) benign(0.01) TCGA-59-A5PD-01 17 28512572 28512572 A T NSRP1 Silent p.A519A 0.24 TCGA-59-A5PD-01 17 33875258 33875258 T A SLFN14 Nonstop_Mutation p.*913Cext*26 0.16 TCGA-59-A5PD-01 17 3438941 3438941 G C TRPV3 Missense_Mutation p.A237G 0.16 tolerated(0.13) benign(0.167) TCGA-59-A5PD-01 17 40259714 40259714 G A DHX58 Missense_Mutation p.A302V 0.58 deleterious(0) probably_damaging(0.996) TCGA-59-A5PD-01 17 45569809 45569809 G C MRPL45P2 RNA 0.21 TCGA-59-A5PD-01 17 46199349 46199349 G A SNX11 3'UTR 0.70 TCGA-59-A5PD-01 17 5073953 5073954 GC T USP6 Frame_Shift_Del p.A1233Lfs*11 0.41 TCGA-59-A5PD-01 17 58040215 58040233 CGCTCAGAATCAAAATATA TGCATAACAAGT RNFT1 Frame_Shift_Del p.Y157Tfs*12 0.23 TCGA-59-A5PD-01 17 62855779 62855779 A C LRRC37A3 Silent p.A1495A 0.80 TCGA-59-A5PD-01 17 71377056 71377056 C G SDK2 Missense_Mutation p.S1580T 0.71 tolerated(0.33) benign(0.012) TCGA-59-A5PD-01 17 72959927 72959927 G C HID1 Missense_Mutation p.R99G 0.81 deleterious(0.02) probably_damaging(0.987) TCGA-59-A5PD-01 17 73102063 73102063 C G SLC16A5 Missense_Mutation p.L485V 0.18 deleterious_low_confidence(0) possibly_damaging(0.874) TCGA-59-A5PD-01 17 74470466 74470466 T A RHBDF2 Nonsense_Mutation p.K514* 0.17 TCGA-59-A5PD-01 17 7578492 7578492 C T TP53 Nonsense_Mutation p.W146* 0.79 TCGA-59-A5PD-01 17 8274687 8274687 A C KRBA2 Missense_Mutation p.S56A 0.23 deleterious_low_confidence(0.02) benign(0.062) TCGA-59-A5PD-01 18 580368 580368 C T CETN1 5'UTR 0.64 TCGA-59-A5PD-01 18 65179087 65179087 C T DSEL Missense_Mutation p.R930Q 0.13 tolerated(1) benign(0.011) TCGA-59-A5PD-01 18 7043328 7043328 A C LAMA1 Silent p.T351T 0.23 TCGA-59-A5PD-01 18 8826071 8826071 C A SOGA2 Silent p.P1521P 0.45 TCGA-59-A5PD-01 19 14519682 14519682 C T DDX39A 3'UTR 0.14 TCGA-59-A5PD-01 19 18324226 18324226 C G PDE4C Silent p.V520V 0.35 TCGA-59-A5PD-01 19 3028930 3028930 G A TLE2 5'UTR 0.25 TCGA-59-A5PD-01 19 36884663 36884663 A C ZFP82 Silent p.T193T 0.43 TCGA-59-A5PD-01 19 3959484 3959484 T A DAPK3 Missense_Mutation p.K327M 0.73 tolerated(0.1) benign(0.083) TCGA-59-A5PD-01 19 41745216 41745216 C G AXL Missense_Mutation p.P428A 0.49 deleterious(0.01) benign(0.146) TCGA-59-A5PD-01 19 4267737 4267737 C T CCDC94 Silent p.C275C 0.65 TCGA-59-A5PD-01 19 48048489 48048489 C T ZNF541 Missense_Mutation p.V433I 0.43 tolerated(0.07) benign(0.354) TCGA-59-A5PD-01 19 51995029 51995029 C T SIGLEC12 Missense_Mutation p.A552T 0.53 tolerated(0.24) benign(0.278) TCGA-59-A5PD-01 19 54598322 54598322 A T OSCAR 3'UTR 0.75 TCGA-59-A5PD-01 19 56565176 56565176 T C NLRP5 Splice_Site p.X1100_splice 0.41 TCGA-59-A5PD-01 19 7082906 7082906 A T ZNF557 Silent p.G148G 0.23 TCGA-59-A5PD-01 19 8841863 8841863 T A OR2Z1 Missense_Mutation p.I158N 0.52 deleterious(0) possibly_damaging(0.806) TCGA-59-A5PD-01 1 150116974 150116974 A G VPS45 Nonstop_Mutation p.*571Wext*21 0.08 TCGA-59-A5PD-01 1 157650790 157650790 C A FCRL3 Silent p.L646L 0.49 TCGA-59-A5PD-01 1 161007698 161007698 C T TSTD1 Intron 0.22 TCGA-59-A5PD-01 1 162740176 162740176 T C DDR2 Missense_Mutation p.S460P 0.44 tolerated(0.2) benign(0.01) TCGA-59-A5PD-01 1 166819158 166819158 G C POGK Missense_Mutation p.D448H 0.29 tolerated(0.1) probably_damaging(0.998) TCGA-59-A5PD-01 1 169578793 169578793 C A SELP Missense_Mutation p.V428F 0.29 tolerated(0.29) possibly_damaging(0.481) TCGA-59-A5PD-01 1 198608185 198608185 C G PTPRC 5'UTR 0.62 TCGA-59-A5PD-01 1 200974017 200974017 C T KIF21B Silent p.S259S 0.23 TCGA-59-A5PD-01 1 203004757 203004757 G A PPFIA4 5'UTR 0.07 TCGA-59-A5PD-01 1 204103763 204103763 G A ETNK2 Intron 0.27 TCGA-59-A5PD-01 1 223168257 223168257 C T DISP1 Missense_Mutation p.S307L 0.34 deleterious(0) possibly_damaging(0.728) TCGA-59-A5PD-01 1 231954795 231954795 T C DISC1 Intron 0.48 TCGA-59-A5PD-01 1 28476470 28476470 A T PTAFR 3'UTR 0.58 TCGA-59-A5PD-01 1 33998789 33998789 G A CSMD2 Silent p.N3200N 0.46 TCGA-59-A5PD-01 1 39823452 39823452 G C MACF1 Missense_Mutation p.V1882L 0.23 possibly_damaging(0.508) TCGA-59-A5PD-01 1 47534366 47534366 G T CYP4Z1 Missense_Mutation p.V84F 0.38 tolerated(1) benign(0.225) TCGA-59-A5PD-01 1 52485885 52485885 A C TXNDC12 3'UTR 0.23 TCGA-59-A5PD-01 1 52704094 52704094 T C ZFYVE9 Silent p.S335S 0.29 TCGA-59-A5PD-01 1 82456928 82456928 A T LPHN2 3'UTR 0.27 TCGA-59-A5PD-01 20 33447260 33447260 C G GGT7 Missense_Mutation p.E334Q 0.17 deleterious(0.01) probably_damaging(0.983) TCGA-59-A5PD-01 20 391175 391175 T C RBCK1 Intron 0.51 TCGA-59-A5PD-01 20 49195803 49195803 G A PTPN1 Silent p.L267L 0.16 TCGA-59-A5PD-01 20 52770250 52770250 C A CYP24A1 3'UTR 0.35 TCGA-59-A5PD-01 20 61525436 61525436 C T DIDO1 Missense_Mutation p.A895T 0.11 benign(0.004) TCGA-59-A5PD-01 21 15599437 15599437 G A RBM11 Silent p.E223E 0.29 TCGA-59-A5PD-01 21 27938609 27938609 T A CYYR1 Missense_Mutation p.Y51F 0.17 deleterious(0.05) probably_damaging(0.982) TCGA-59-A5PD-01 21 35796198 35796198 G C AP000322.53 5'UTR 0.41 TCGA-59-A5PD-01 22 23964338 23964338 T G C22orf43 Missense_Mutation p.L108F 0.53 tolerated_low_confidence(0.1) benign(0.017) TCGA-59-A5PD-01 22 28193077 28193077 G C MN1 Missense_Mutation p.P1152R 1.00 probably_damaging(1) TCGA-59-A5PD-01 22 36886166 36886166 G C FOXRED2 Silent p.G648G 0.11 TCGA-59-A5PD-01 22 36886167 36886167 C T FOXRED2 Missense_Mutation p.G648D 0.11 tolerated_low_confidence(0.67) benign(0.002) TCGA-59-A5PD-01 22 41368575 41368575 G A RBX1 3'UTR 0.18 TCGA-59-A5PD-01 22 46929635 46929635 C G CELSR1 Missense_Mutation p.G1145R 0.15 deleterious(0) probably_damaging(1) TCGA-59-A5PD-01 2 103318882 103318882 A T SLC9A2 Missense_Mutation p.K589I 0.23 tolerated(0.2) benign(0.007) TCGA-59-A5PD-01 2 109381979 109381979 T C RANBP2 Missense_Mutation p.F1662L 0.41 deleterious(0.02) benign(0.04) TCGA-59-A5PD-01 2 136547252 136547252 G C LCT Missense_Mutation p.P1818A 0.35 deleterious(0.02) possibly_damaging(0.512) TCGA-59-A5PD-01 2 149866813 149866813 G C KIF5C Missense_Mutation p.K905N 0.22 deleterious(0) probably_damaging(0.963) TCGA-59-A5PD-01 2 152296613 152296613 C G RIF1 Missense_Mutation p.S540C 0.36 deleterious(0) probably_damaging(0.914) TCGA-59-A5PD-01 2 15618392 15618392 G C NBAS Missense_Mutation p.P369A 0.50 deleterious(0.01) possibly_damaging(0.872) TCGA-59-A5PD-01 2 166847962 166847962 C T SCN1A Silent p.T1941T 0.45 TCGA-59-A5PD-01 2 175939236 175939236 T A ATF2 3'UTR 0.05 TCGA-59-A5PD-01 2 179593080 179593080 C A TTN Missense_Mutation p.D6491Y 0.46 TCGA-59-A5PD-01 2 191300856 191300856 A G MFSD6 Missense_Mutation p.E34G 0.18 tolerated(0.14) benign(0.002) TCGA-59-A5PD-01 2 191929681 191929681 C A STAT4 Missense_Mutation p.A212S 0.32 deleterious(0.01) benign(0.043) TCGA-59-A5PD-01 2 200137336 200137336 C T SATB2 Silent p.A600A 0.29 TCGA-59-A5PD-01 2 204824359 204824359 C G ICOS 3'UTR 0.06 TCGA-59-A5PD-01 2 20870883 20870883 C T GDF7 Missense_Mutation p.R351C 0.19 deleterious(0.02) probably_damaging(0.994) TCGA-59-A5PD-01 2 213866308 213866308 C T IKZF2 3'UTR 0.54 TCGA-59-A5PD-01 2 242139598 242139598 C G ANO7 Missense_Mutation p.P225R 0.23 tolerated(0.6) benign(0.087) TCGA-59-A5PD-01 2 25059815 25059815 A G ADCY3 Missense_Mutation p.S545P 0.13 tolerated(0.72) benign(0) TCGA-59-A5PD-01 2 31572692 31572692 C A XDH Silent p.R943R 0.14 TCGA-59-A5PD-01 2 33952509 33952509 C T AC009499.1 Intron 0.33 TCGA-59-A5PD-01 2 46707871 46707871 G C TMEM247 Missense_Mutation p.E149Q 0.24 deleterious(0.03) possibly_damaging(0.707) TCGA-59-A5PD-01 2 48667989 48667989 A G PPP1R21 5'UTR 0.50 TCGA-59-A5PD-01 2 69472500 69472500 C A ANTXR1 Silent p.P526P 0.31 TCGA-59-A5PD-01 2 70165475 70165475 A T MXD1 3'UTR 0.11 TCGA-59-A5PD-01 2 97637980 97637980 C T FAM178B Silent p.G74G 0.37 TCGA-59-A5PD-01 3 10127560 10127560 C T FANCD2 Nonsense_Mutation p.R1097* 0.24 TCGA-59-A5PD-01 3 108174667 108174667 C T MYH15 Silent p.K746K 0.09 TCGA-59-A5PD-01 3 113002418 113002418 C T BOC Silent p.S864S 0.13 TCGA-59-A5PD-01 3 123680166 123680166 G - CCDC14 5'UTR 0.16 TCGA-59-A5PD-01 3 124439504 124439504 C A RP11-71H17.7 5'Flank 0.51 TCGA-59-A5PD-01 3 124689434 124689434 G T HEG1 3'UTR 0.33 TCGA-59-A5PD-01 3 128864692 128864692 C A ISY1 Missense_Mutation p.R71L 0.13 deleterious(0) probably_damaging(0.982) TCGA-59-A5PD-01 3 167034867 167034867 C T ZBBX Missense_Mutation p.A374T 0.17 tolerated(0.16) benign(0.133) TCGA-59-A5PD-01 3 183889792 183889792 C T DVL3 3'UTR 0.37 TCGA-59-A5PD-01 3 189612664 189612664 G C TP63 3'UTR 0.05 TCGA-59-A5PD-01 3 194061930 194061930 C T CPN2 Nonsense_Mutation p.W501* 0.06 TCGA-59-A5PD-01 3 195508655 195508655 G A MUC4 Missense_Mutation p.P3266S 0.18 possibly_damaging(0.858) TCGA-59-A5PD-01 3 195590345 195590345 T A TNK2 3'UTR 0.54 TCGA-59-A5PD-01 3 21792420 21792420 C T ZNF385D 5'UTR 0.78 TCGA-59-A5PD-01 3 46062503 46062503 G T XCR1 Missense_Mutation p.P313T 0.86 tolerated(0.24) benign(0.004) TCGA-59-A5PD-01 3 49842111 49842111 C T FAM212A Silent p.P185P 0.79 TCGA-59-A5PD-01 3 52417436 52417436 A G DNAH1 Missense_Mutation p.N2659S 0.40 benign(0.189) TCGA-59-A5PD-01 3 57344775 57344775 G C DNAH12 Silent p.G341G 0.27 TCGA-59-A5PD-01 4 110650911 110650911 C G PLA2G12A Missense_Mutation p.V19L 0.78 tolerated(0.56) benign(0.067) TCGA-59-A5PD-01 4 110970529 110970529 T G ELOVL6 3'UTR 0.32 TCGA-59-A5PD-01 4 151203677 151203677 A C LRBA Nonsense_Mutation p.Y2758* 0.42 TCGA-59-A5PD-01 4 166964547 166964547 C T TLL1 Silent p.V500V 0.53 TCGA-59-A5PD-01 4 2428271 2428271 C A RP11-503N18.1 RNA 0.33 TCGA-59-A5PD-01 4 41694392 41694392 C G LIMCH1 Missense_Mutation p.R1073G 0.61 deleterious(0) probably_damaging(1) TCGA-59-A5PD-01 4 52938118 52938118 A T SPATA18 Missense_Mutation p.H185L 0.17 tolerated(0.5) benign(0.117) TCGA-59-A5PD-01 4 66467895 66467921 CTGGAAGCACCTTCATTGGAGATCCAA - EPHA5 In_Frame_Del p.S116_S124del 0.34 TCGA-59-A5PD-01 4 68925049 68925049 A G TMPRSS11F Missense_Mutation p.C385R 0.23 deleterious(0) probably_damaging(1) TCGA-59-A5PD-01 4 73013511 73013511 T A NPFFR2 Silent p.T517T 0.49 TCGA-59-A5PD-01 4 79462180 79462180 G A FRAS1 Missense_Mutation p.E3981K 0.38 benign(0.003) TCGA-59-A5PD-01 4 84374709 84374709 G A HELQ Silent p.N229N 0.17 TCGA-59-A5PD-01 4 88226203 88226203 A G HSD17B13 3'UTR 0.21 TCGA-59-A5PD-01 5 1036380 1036380 G C NKD2 Missense_Mutation p.S223T 0.10 tolerated(0.41) benign(0.015) TCGA-59-A5PD-01 5 140248834 140248834 C T PCDHA11 Missense_Mutation p.A49V 0.49 deleterious_low_confidence(0.01) possibly_damaging(0.897) TCGA-59-A5PD-01 5 145508259 145508259 C T LARS Silent p.L952L 0.28 TCGA-59-A5PD-01 5 147803564 147803564 T G FBXO38 Nonsense_Mutation p.L541* 0.32 TCGA-59-A5PD-01 5 15935343 15935343 C A FBXL7 Intron 0.06 TCGA-59-A5PD-01 5 24487983 24487983 T G CDH10 Missense_Mutation p.K719T 0.20 tolerated(0.32) benign(0.31) TCGA-59-A5PD-01 5 272886 272886 C T PDCD6 Silent p.N54N 0.56 TCGA-59-A5PD-01 5 5461142 5461142 G C KIAA0947 Missense_Mutation p.K565N 0.13 deleterious(0) possibly_damaging(0.888) TCGA-59-A5PD-01 5 58147278 58147278 T G RAB3C 3'UTR 0.25 TCGA-59-A5PD-01 5 61697903 61697903 G T DIMT1 Missense_Mutation p.T67N 0.50 deleterious(0.01) possibly_damaging(0.735) TCGA-59-A5PD-01 5 79033781 79033781 C T CMYA5 Missense_Mutation p.P3065S 0.66 benign(0.205) TCGA-59-A5PD-01 6 110933891 110933891 C T CDK19 3'UTR 0.64 TCGA-59-A5PD-01 6 130505749 130505749 G C SAMD3 Missense_Mutation p.L135V 0.51 tolerated_low_confidence(0.15) benign(0.002) TCGA-59-A5PD-01 6 151773515 151773515 C T C6orf211 5'UTR 0.53 TCGA-59-A5PD-01 6 22136750 22136750 T C CASC14 RNA 0.15 TCGA-59-A5PD-01 6 27101266 27101266 G C HIST1H2AG 3'UTR 0.50 TCGA-59-A5PD-01 6 31704048 31704048 C A CLIC1 Missense_Mutation p.L10F 0.53 deleterious(0.02) benign(0.176) TCGA-59-A5PD-01 6 31928242 31928242 A G SKIV2L Missense_Mutation p.T130A 0.19 deleterious(0.03) benign(0.018) TCGA-59-A5PD-01 6 40360521 40360521 C T LRFN2 Missense_Mutation p.A511T 0.19 tolerated(0.38) benign(0.004) TCGA-59-A5PD-01 6 47759634 47759634 T A OPN5 Missense_Mutation p.F116Y 0.43 deleterious(0) possibly_damaging(0.896) TCGA-59-A5PD-01 6 50807873 50807873 A T TFAP2B Missense_Mutation p.E315D 0.43 deleterious(0.01) possibly_damaging(0.617) TCGA-59-A5PD-01 6 75912449 75912449 G T COL12A1 Silent p.S20S 0.37 TCGA-59-A5PD-01 7 101925164 101925164 C T SH2B2 5'Flank 0.30 TCGA-59-A5PD-01 7 107218039 107218039 T G DUS4L 3'UTR 0.29 TCGA-59-A5PD-01 7 111540469 111540469 G A DOCK4 Missense_Mutation p.R481W 0.46 deleterious(0) probably_damaging(0.993) TCGA-59-A5PD-01 7 128434457 128434457 A G CCDC136 Silent p.E24E 0.27 TCGA-59-A5PD-01 7 131830039 131830039 C T PLXNA4 Silent p.L1688L 0.15 TCGA-59-A5PD-01 7 150711301 150711301 C T ATG9B 3'UTR 0.21 TCGA-59-A5PD-01 7 151927407 151927407 C A KMT2C Splice_Site p.X924_splice 0.39 TCGA-59-A5PD-01 7 2768330 2768330 C T GNA12 3'UTR 0.33 TCGA-59-A5PD-01 7 38269627 38269627 T C STARD3NL 3'UTR 0.20 TCGA-59-A5PD-01 7 38468187 38468187 C G AMPH Intron 0.19 TCGA-59-A5PD-01 7 44609420 44609420 G C DDX56 Missense_Mutation p.L403V 0.26 tolerated(0.56) benign(0.004) TCGA-59-A5PD-01 7 45125487 45125487 C A NACAD Nonsense_Mutation p.E98* 0.47 TCGA-59-A5PD-01 8 135725123 135725123 G T ZFAT 5'UTR 0.24 TCGA-59-A5PD-01 8 145555712 145555712 A G SCRT1 3'UTR 0.48 TCGA-59-A5PD-01 8 8747609 8747609 C T MFHAS1 Missense_Mutation p.C987Y 0.35 deleterious(0) possibly_damaging(0.692) TCGA-59-A5PD-01 8 90958380 90958380 C T NBN Silent p.K686K 0.43 TCGA-59-A5PD-01 9 117087432 117087432 G T ORM1 Missense_Mutation p.K180N 0.74 deleterious(0.03) probably_damaging(0.994) TCGA-59-A5PD-01 9 124751560 124751560 T A TTLL11 Nonsense_Mutation p.K485* 0.74 TCGA-59-A5PD-01 9 134473666 134473666 C G RAPGEF1 Missense_Mutation p.A677P 0.39 tolerated(0.28) benign(0.207) TCGA-59-A5PD-01 9 135204371 135204372 - ATTCTAAACTA SETX Nonsense_Mutation p.E872* 0.17 TCGA-59-A5PD-01 9 16436012 16436012 T A BNC2 Missense_Mutation p.E727V 0.27 tolerated(0.09) benign(0.005) TCGA-59-A5PD-01 9 23692357 23692357 A G ELAVL2 3'UTR 0.34 TCGA-59-A5PD-01 9 35370341 35370341 A T UNC13B Missense_Mutation p.D414V 0.59 deleterious(0) probably_damaging(0.999) TCGA-59-A5PD-01 9 37746501 37746501 G A FRMPD1 Missense_Mutation p.R1491H 0.71 deleterious(0.04) benign(0.017) TCGA-59-A5PD-01 9 6645315 6645315 T A GLDC Missense_Mutation p.D62V 0.10 tolerated(0.1) benign(0.432) TCGA-59-A5PD-01 X 101623759 101623759 C T NXF2B Silent p.A201A 0.27 TCGA-59-A5PD-01 X 103495144 103495144 C G ESX1 Missense_Mutation p.R329P 0.21 tolerated_low_confidence(0.17) unknown(0) TCGA-59-A5PD-01 X 109695175 109695175 G A RGAG1 Missense_Mutation p.V444I 0.50 tolerated(0.13) benign(0.037) TCGA-59-A5PD-01 X 120182853 120182853 T A GLUD2 Missense_Mutation p.Y439N 0.28 deleterious(0) probably_damaging(1) TCGA-59-A5PD-01 X 125684831 125684831 G T DCAF12L1 3'UTR 0.37 TCGA-59-A5PD-01 X 129364597 129364597 C T ZNF280C Missense_Mutation p.M292I 0.15 deleterious(0) probably_damaging(0.945) TCGA-59-A5PD-01 X 129474170 129474170 G A SLC25A14 5'UTR 0.25 TCGA-59-A5PD-01 X 139038680 139038680 T G CXorf66 Missense_Mutation p.K154T 0.27 tolerated(0.07) possibly_damaging(0.859) TCGA-59-A5PD-01 X 147031194 147031194 T A FMR1 3'UTR 0.31 TCGA-59-A5PD-01 X 148038093 148038093 G C AFF2 Missense_Mutation p.A840P 0.21 tolerated(0.99) benign(0.283) TCGA-59-A5PD-01 X 48455925 48455925 A T WDR13 5'UTR 0.64 TCGA-59-A5PD-01 X 48887872 48887872 G C TFE3 Missense_Mutation p.H509D 0.84 tolerated(0.58) possibly_damaging(0.537) TCGA-59-A5PD-01 X 51233923 51233923 A T NUDT11 3'UTR 0.24 TCGA-59-A5PD-01 X 52679403 52679403 C A SSX7 Missense_Mutation p.K110N 0.12 deleterious(0) probably_damaging(0.964) TCGA-59-A5PD-01 X 63409421 63409421 T - AMER1 3'UTR 0.08 TCGA-59-A5PD-01 X 71521528 71521528 A G CITED1 3'UTR 0.31 TCGA-59-A5PD-01 X 73072466 73072466 G T XIST RNA 0.16 TCGA-59-A5PD-01 X 90692868 90692868 G A PABPC5 3'UTR 0.17 TCGA-5X-AA5U-01 10 105830198 105830198 G C COL17A1 Missense_Mutation p.A198G 0.27 unknown(0) TCGA-5X-AA5U-01 10 127542655 127542655 C - DHX32 Frame_Shift_Del p.D323Mfs*16 0.17 TCGA-5X-AA5U-01 10 27529362 27529362 C A ACBD5 Missense_Mutation p.D23Y 0.41 deleterious_low_confidence(0) benign(0.051) TCGA-5X-AA5U-01 11 61914264 61914264 C G INCENP Silent p.R698R 0.27 TCGA-5X-AA5U-01 11 93468341 93468341 T - KIAA1731 3'Flank 0.20 TCGA-5X-AA5U-01 12 107281664 107281664 C T RIC8B 3'Flank 0.20 TCGA-5X-AA5U-01 12 121458801 121458801 C T OASL Missense_Mutation p.V370M 0.18 tolerated(0.05) possibly_damaging(0.544) TCGA-5X-AA5U-01 12 131453600 131453600 A T GPR133 Intron 0.08 TCGA-5X-AA5U-01 12 48172891 48172891 G A SLC48A1 Missense_Mutation p.G73S 0.29 tolerated(0.38) possibly_damaging(0.826) TCGA-5X-AA5U-01 12 72936131 72936131 T C TRHDE Silent p.L550L 0.31 TCGA-5X-AA5U-01 13 21751742 21751742 A C MRP63 3'UTR 0.20 TCGA-5X-AA5U-01 13 23908241 23908241 T C SACS Silent p.K3258K 0.28 TCGA-5X-AA5U-01 14 24436612 24436612 T C DHRS4 Intron 0.38 TCGA-5X-AA5U-01 16 15761228 15761228 A G NDE1 Missense_Mutation p.I57V 0.31 tolerated(0.51) benign(0.001) TCGA-5X-AA5U-01 17 43227525 43227526 - GGAGCT HEXIM1 In_Frame_Ins p.E328_L329dup 0.17 TCGA-5X-AA5U-01 18 43328369 43328369 C A SLC14A1 Silent p.G381G 0.25 TCGA-5X-AA5U-01 18 61233876 61233876 T C SERPINB12 Missense_Mutation p.W284R 0.49 deleterious(0) probably_damaging(0.998) TCGA-5X-AA5U-01 19 10476192 10476192 C A TYK2 Splice_Site p.X337_splice 0.21 TCGA-5X-AA5U-01 19 12298146 12298146 G A ZNF136 Missense_Mutation p.S318N 0.11 tolerated(0.24) benign(0.02) TCGA-5X-AA5U-01 19 13915818 13915818 G C ZSWIM4 Missense_Mutation p.E190Q 0.25 deleterious(0) benign(0.015) TCGA-5X-AA5U-01 19 14991737 14991737 A C OR7A17 Missense_Mutation p.L144R 0.21 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-5X-AA5U-01 19 54722253 54722253 C A LILRB3 Missense_Mutation p.D524Y 0.28 deleterious(0) possibly_damaging(0.655) TCGA-5X-AA5U-01 1 100336320 100336320 C T AGL Nonsense_Mutation p.R285* 0.14 TCGA-5X-AA5U-01 1 176833520 176833520 C T ASTN1 Missense_Mutation p.G1262E 0.17 deleterious_low_confidence(0) possibly_damaging(0.818) TCGA-5X-AA5U-01 1 176905304 176905304 A T ASTN1 Intron 0.80 TCGA-5X-AA5U-01 1 19234917 19234917 G C IFFO2 3'UTR 0.17 TCGA-5X-AA5U-01 1 209800759 209800759 G C LAMB3 Missense_Mutation p.P485R 0.20 deleterious(0.03) probably_damaging(0.952) TCGA-5X-AA5U-01 1 3322165 3322165 G A PRDM16 Missense_Mutation p.G380D 0.18 deleterious(0) probably_damaging(0.998) TCGA-5X-AA5U-01 1 36039221 36039221 C T TFAP2E Intron 0.19 TCGA-5X-AA5U-01 1 77634995 77634995 C A PIGK Nonsense_Mutation p.E109* 0.28 TCGA-5X-AA5U-01 20 50140037 50140037 G C NFATC2 Missense_Mutation p.P248R 0.18 deleterious(0) probably_damaging(0.999) TCGA-5X-AA5U-01 20 58449065 58449065 G A SYCP2 Missense_Mutation p.T1134I 0.16 tolerated(0.13) probably_damaging(0.959) TCGA-5X-AA5U-01 20 8721001 8721001 T C PLCB1 Silent p.Y773Y 0.26 TCGA-5X-AA5U-01 22 24654012 24654012 C G POM121L9P RNA 0.26 TCGA-5X-AA5U-01 22 49147540 49147540 C T FAM19A5 3'Flank 0.46 TCGA-5X-AA5U-01 2 1480893 1480893 C A TPO Silent p.A285A 0.37 TCGA-5X-AA5U-01 2 189910626 189910626 C T COL5A2 Missense_Mutation p.R1070H 0.25 unknown(0) TCGA-5X-AA5U-01 2 70314938 70314938 C G PCBP1 Missense_Mutation p.H21Q 0.17 tolerated(0.24) probably_damaging(0.985) TCGA-5X-AA5U-01 2 97476037 97476037 G A CNNM4 3'UTR 0.59 TCGA-5X-AA5U-01 3 62518689 62518689 G A CADPS Silent p.C716C 0.26 TCGA-5X-AA5U-01 5 140517176 140517176 G A PCDHB5 Silent p.S720S 0.24 TCGA-5X-AA5U-01 8 22035454 22035454 C T BMP1 Missense_Mutation p.R274W 0.08 deleterious(0) probably_damaging(0.998) TCGA-5X-AA5U-01 8 75926225 75926225 G A CRISPLD1 Missense_Mutation p.V172M 0.39 deleterious(0) probably_damaging(0.984) TCGA-5X-AA5U-01 9 107528649 107528649 C G NIPSNAP3B Missense_Mutation p.T35R 0.41 tolerated(0.06) benign(0.06) TCGA-5X-AA5U-01 9 117311 117311 G T FOXD4 Nonsense_Mutation p.S270* 0.30 TCGA-5X-AA5U-01 X 105922359 105922359 C A CXorf57 3'UTR 0.64 TCGA-5X-AA5U-01 X 141290648 141290648 G C MAGEC2 3'UTR 0.55 TCGA-5X-AA5U-01 X 153278582 153278582 G A IRAK1 Silent p.P614P 0.30 TCGA-5X-AA5U-01 X 73524025 73524025 A C ZCCHC13 5'UTR 0.36 TCGA-5X-AA5U-01 X 7811983 7811983 C A VCX Missense_Mutation p.P183T 0.07 deleterious(0.01) unknown(0) TCGA-5X-AA5U-01 X 8434320 8434320 C A VCX3B Missense_Mutation p.P213T 0.12 deleterious(0) unknown(0) TCGA-OY-A56P-01 10 115351962 115351962 G A NRAP Silent p.I1545I 0.56 TCGA-OY-A56P-01 10 48929238 48929238 G A RNA5SP314 5'Flank 0.25 TCGA-OY-A56P-01 10 48929260 48929260 G A RNA5SP314 5'Flank 0.24 TCGA-OY-A56P-01 11 6737325 6737325 G A GVINP1 RNA 0.47 TCGA-OY-A56P-01 12 46662670 46662670 G T SLC38A1 5'UTR 0.60 TCGA-OY-A56P-01 13 111132605 111132605 G A COL4A2 Missense_Mutation p.A876T 0.12 benign(0.095) TCGA-OY-A56P-01 15 31668318 31668318 G T KLF13 3'UTR 0.24 TCGA-OY-A56P-01 15 42117469 42117469 C T MAPKBP1 Silent p.T1460T 0.12 TCGA-OY-A56P-01 15 49447775 49447775 T C COPS2 Translation_Start_Site p.M1? 0.95 deleterious(0) unknown(0) TCGA-OY-A56P-01 16 2816332 2816332 T C SRRM2 Missense_Mutation p.S1935P 0.65 unknown(0) TCGA-OY-A56P-01 17 43183262 43183262 G T NMT1 3'UTR 0.99 TCGA-OY-A56P-01 17 49296322 49296322 A T MBTD1 Silent p.A124A 0.14 TCGA-OY-A56P-01 17 7577081 7577081 T C TP53 Missense_Mutation p.E286G 1.00 deleterious(0) probably_damaging(0.988) TCGA-OY-A56P-01 17 7852743 7852743 C T CNTROB Missense_Mutation p.P898L 0.16 tolerated_low_confidence(0.08) possibly_damaging(0.853) TCGA-OY-A56P-01 17 80919010 80919010 G A B3GNTL1 Silent p.G216G 0.35 TCGA-OY-A56P-01 18 14778018 14778018 G A ANKRD30B Missense_Mutation p.C455Y 0.19 tolerated_low_confidence(0.15) possibly_damaging(0.694) TCGA-OY-A56P-01 18 19093823 19093823 C G GREB1L Missense_Mutation p.L1593V 0.52 deleterious(0) probably_damaging(0.999) TCGA-OY-A56P-01 19 18368909 18368909 G A KIAA1683 Missense_Mutation p.A1062V 0.20 tolerated(0.95) benign(0) TCGA-OY-A56P-01 19 37239754 37239754 C G ZNF850 Missense_Mutation p.D730H 0.04 deleterious(0.02) probably_damaging(0.956) TCGA-OY-A56P-01 19 43702179 43702179 G C PSG4 Missense_Mutation p.R227G 0.16 deleterious(0.01) possibly_damaging(0.454) TCGA-OY-A56P-01 1 175331943 175331943 C G TNR Missense_Mutation p.G904R 0.29 deleterious(0.01) possibly_damaging(0.651) TCGA-OY-A56P-01 1 183387457 183387459 GTT - NMNAT2 5'UTR 0.57 TCGA-OY-A56P-01 1 223442011 223442011 C T SUSD4 Missense_Mutation p.R123H 0.33 tolerated(0.55) benign(0.025) TCGA-OY-A56P-01 1 32829320 32829320 C T TSSK3 Silent p.L90L 0.33 TCGA-OY-A56P-01 1 55136198 55136198 C A MROH7 Missense_Mutation p.S473Y 0.24 deleterious(0) probably_damaging(0.91) TCGA-OY-A56P-01 22 29695598 29695598 G T EWSR1 Missense_Mutation p.R568L 1.00 tolerated_low_confidence(0.15) unknown(0) TCGA-OY-A56P-01 22 30824481 30824481 G A MTFP1 Missense_Mutation p.R154H 0.24 deleterious(0) probably_damaging(0.993) TCGA-OY-A56P-01 22 37768971 37768971 C T ELFN2 3'UTR 0.12 TCGA-OY-A56P-01 2 153504379 153504379 A G FMNL2 Missense_Mutation p.Q1080R 0.18 unknown(0) TCGA-OY-A56P-01 2 183866945 183866945 G C NCKAP1 Missense_Mutation p.T147R 0.08 deleterious(0.01) possibly_damaging(0.851) TCGA-OY-A56P-01 2 197750153 197750153 T C PGAP1 Missense_Mutation p.I423V 0.27 tolerated(0.89) benign(0.002) TCGA-OY-A56P-01 2 204293243 204293243 C A ABI2 3'UTR 0.54 TCGA-OY-A56P-01 2 37267568 37267568 A G HEATR5B Silent p.L984L 0.11 TCGA-OY-A56P-01 2 86374945 86374945 G A IMMT Silent p.V471V 0.59 TCGA-OY-A56P-01 3 167240172 167240172 T C WDR49 Missense_Mutation p.E550G 0.61 tolerated(0.08) benign(0.025) TCGA-OY-A56P-01 3 46963771 46963771 C G CCDC12 Missense_Mutation p.E138Q 0.18 deleterious(0.03) benign(0.39) TCGA-OY-A56P-01 3 50296101 50296101 G A GNAI2 3'UTR 0.44 TCGA-OY-A56P-01 3 52818466 52818466 G A ITIH1 Silent p.E460E 0.13 TCGA-OY-A56P-01 3 52818467 52818467 G C ITIH1 Missense_Mutation p.D461H 0.13 deleterious(0.01) probably_damaging(0.992) TCGA-OY-A56P-01 3 57386144 57386144 A C DNAH12 Missense_Mutation p.F38V 0.13 deleterious(0) probably_damaging(0.987) TCGA-OY-A56P-01 5 159821920 159821920 C T C5orf54 Missense_Mutation p.R193H 0.28 deleterious(0) probably_damaging(0.999) TCGA-OY-A56P-01 6 62604661 62604661 C T KHDRBS2 Missense_Mutation p.R230H 0.27 tolerated(0.16) benign(0.006) TCGA-OY-A56P-01 7 20198946 20198946 T C MACC1 Silent p.L346L 0.43 TCGA-OY-A56P-01 7 50611606 50611606 C T DDC Missense_Mutation p.V60I 0.20 tolerated(0.98) benign(0.011) TCGA-OY-A56P-01 7 95951351 95951351 C A SLC25A13 5'UTR 0.17 TCGA-OY-A56P-01 7 99999619 99999619 A T ZCWPW1 Missense_Mutation p.L506Q 0.14 tolerated(0.09) benign(0.139) TCGA-OY-A56P-01 8 128751258 128751258 C T MYC Silent p.S265S 0.20 TCGA-OY-A56P-01 8 142477516 142477516 C T MROH5 3'UTR 0.11 TCGA-OY-A56P-01 8 145168594 145168594 G A KIAA1875 Missense_Mutation p.R1073H 0.14 tolerated_low_confidence(0.12) benign(0.301) TCGA-OY-A56P-01 8 1626702 1626702 T - DLGAP2 Frame_Shift_Del p.L792* 0.20 TCGA-OY-A56P-01 8 48882614 48882614 G C MCM4 Missense_Mutation p.K477N 0.24 deleterious(0) probably_damaging(0.992) TCGA-OY-A56P-01 X 80371841 80371841 C T HMGN5 Splice_Site p.X44_splice 1.00 TCGA-OY-A56Q-01 10 15151743 15151743 A G NMT2 Silent p.Y478Y 0.20 TCGA-OY-A56Q-01 10 91099434 91099434 C T IFIT3 Missense_Mutation p.T341M 0.23 deleterious(0.04) benign(0.003) TCGA-OY-A56Q-01 11 1478187 1478187 C A BRSK2 Intron 0.22 TCGA-OY-A56Q-01 11 212908 212908 G A RIC8A Missense_Mutation p.G434R 0.40 deleterious(0) probably_damaging(0.998) TCGA-OY-A56Q-01 11 33763225 33763225 C A FBXO3 3'UTR 0.36 TCGA-OY-A56Q-01 11 5758564 5758564 C G OR56B1 Missense_Mutation p.T273R 0.29 deleterious(0.02) benign(0.288) TCGA-OY-A56Q-01 11 62293758 62293758 C G AHNAK Missense_Mutation p.D2711H 0.20 probably_damaging(0.985) TCGA-OY-A56Q-01 11 66101471 66101471 G A RIN1 Missense_Mutation p.R504C 0.51 tolerated(0.05) benign(0.027) TCGA-OY-A56Q-01 11 77033727 77033727 C T PAK1 3'Flank 0.53 TCGA-OY-A56Q-01 12 120534818 120534818 G A RAB35 3'UTR 0.27 TCGA-OY-A56Q-01 12 393307 393307 A T KDM5A 3'UTR 0.04 TCGA-OY-A56Q-01 12 9312543 9312543 C G PZP Missense_Mutation p.G1043A 0.11 deleterious(0.05) probably_damaging(0.999) TCGA-OY-A56Q-01 14 102843168 102843168 A G TECPR2 Missense_Mutation p.Y37C 0.92 deleterious(0.01) probably_damaging(0.999) TCGA-OY-A56Q-01 14 103434625 103434625 C G CDC42BPB Missense_Mutation p.D771H 0.23 deleterious(0) benign(0.252) TCGA-OY-A56Q-01 14 22279704 22279704 C T TRAV9-1 Silent p.L11L 1.00 TCGA-OY-A56Q-01 15 37100578 37100578 G A C15orf41 Missense_Mutation p.C257Y 0.53 tolerated(0.12) possibly_damaging(0.69) TCGA-OY-A56Q-01 15 45427438 45427438 A G DUOX1 Silent p.R148R 0.19 TCGA-OY-A56Q-01 15 59466369 59466369 C T MYO1E Missense_Mutation p.R707K 0.23 tolerated(0.16) benign(0.059) TCGA-OY-A56Q-01 16 1836639 1836639 C T NUBP2 Missense_Mutation p.R40C 0.14 tolerated(0.15) possibly_damaging(0.846) TCGA-OY-A56Q-01 16 28506059 28506059 G A APOBR Silent p.L19L 0.17 TCGA-OY-A56Q-01 16 67006837 67006837 G T CES3 Missense_Mutation p.R534L 0.29 tolerated(0.14) possibly_damaging(0.637) TCGA-OY-A56Q-01 16 71765919 71765919 G C AP1G1 3'Flank 0.12 TCGA-OY-A56Q-01 16 75263902 75263902 A C BCAR1 Missense_Mutation p.L753R 0.25 deleterious(0) probably_damaging(1) TCGA-OY-A56Q-01 16 88941965 88941965 C T CBFA2T3 3'UTR 0.38 TCGA-OY-A56Q-01 17 13980182 13980182 C T COX10 Missense_Mutation p.S103L 0.28 tolerated(0.22) benign(0.003) TCGA-OY-A56Q-01 17 26210112 26210112 C T LYRM9 5'UTR 0.35 TCGA-OY-A56Q-01 17 44772015 44772015 A G NSF Missense_Mutation p.N454S 0.31 tolerated(0.17) benign(0.391) TCGA-OY-A56Q-01 17 7366396 7366396 C T ZBTB4 Silent p.E635E 0.17 TCGA-OY-A56Q-01 17 7576865 7576865 A C TP53 Nonsense_Mutation p.Y327* 1.00 TCGA-OY-A56Q-01 18 319980 319980 T C COLEC12 3'UTR 0.23 TCGA-OY-A56Q-01 18 44560420 44560420 C A TCEB3B Missense_Mutation p.A406S 0.23 tolerated(0.09) possibly_damaging(0.855) TCGA-OY-A56Q-01 18 5419839 5419839 G T EPB41L3 Silent p.I459I 0.37 TCGA-OY-A56Q-01 18 6986270 6986270 C T LAMA1 Missense_Mutation p.A1749T 0.21 tolerated(0.2) benign(0.038) TCGA-OY-A56Q-01 19 13209547 13209547 C T NFIX 3'Flank 0.04 TCGA-OY-A56Q-01 19 14070105 14070105 G A DCAF15 Missense_Mutation p.A345T 0.10 tolerated_low_confidence(0.64) benign(0.046) TCGA-OY-A56Q-01 19 1877388 1877388 G A ABHD17A Silent p.L299L 0.23 TCGA-OY-A56Q-01 19 22156528 22156528 C A ZNF208 Missense_Mutation p.W436C 0.09 tolerated(0.17) benign(0.059) TCGA-OY-A56Q-01 19 36517536 36517536 C T CLIP3 Missense_Mutation p.D172N 0.08 deleterious(0.03) possibly_damaging(0.673) TCGA-OY-A56Q-01 19 39423443 39423443 G A MRPS12 3'UTR 0.11 TCGA-OY-A56Q-01 19 44242300 44242300 G A SMG9 Missense_Mutation p.L295F 0.12 deleterious(0.04) probably_damaging(0.981) TCGA-OY-A56Q-01 1 114306576 114306576 T A RSBN1 3'UTR 0.11 TCGA-OY-A56Q-01 1 12908035 12908035 G C HNRNPCL1 Missense_Mutation p.I36M 0.05 deleterious(0.01) possibly_damaging(0.593) TCGA-OY-A56Q-01 1 149288707 149288707 C T RP11-403I13.8 RNA 0.25 TCGA-OY-A56Q-01 1 186644490 186644491 TT - PTGS2 Frame_Shift_Del p.K432Sfs*7 0.11 TCGA-OY-A56Q-01 1 210948782 210948782 G A KCNH1 Missense_Mutation p.R674W 0.15 deleterious(0.01) probably_damaging(0.95) TCGA-OY-A56Q-01 1 230829285 230829285 G A COG2 3'UTR 0.78 TCGA-OY-A56Q-01 1 28863387 28863387 G T RCC1 Missense_Mutation p.V387L 0.23 tolerated(0.06) benign(0.395) TCGA-OY-A56Q-01 1 29616225 29616225 G A PTPRU Splice_Site p.X783_splice 0.23 TCGA-OY-A56Q-01 1 45965085 45965085 C T CCDC163P Missense_Mutation p.E37K 0.39 deleterious_low_confidence(0.03) possibly_damaging(0.486) TCGA-OY-A56Q-01 20 18529291 18529292 - TT SEC23B Frame_Shift_Ins p.N596Lfs*20 0.12 TCGA-OY-A56Q-01 20 37547664 37547664 T C PPP1R16B 3'UTR 0.13 TCGA-OY-A56Q-01 20 4833723 4833723 C T SLC23A2 3'UTR 0.27 TCGA-OY-A56Q-01 22 22385751 22385751 C T IGLV4-69 Silent p.D80D 0.32 TCGA-OY-A56Q-01 22 41318518 41318518 G A XPNPEP3 Splice_Site p.X412_splice 0.23 TCGA-OY-A56Q-01 2 220098052 220098052 G A ANKZF1 Missense_Mutation p.R239Q 0.10 deleterious(0.02) probably_damaging(0.995) TCGA-OY-A56Q-01 2 70402873 70402888 GCATCTTGAGGCAGTA CCATCT C2orf42 Frame_Shift_Del p.L319Qfs*4 0.13 TCGA-OY-A56Q-01 2 74042613 74042613 G A C2orf78 Silent p.K421K 0.33 TCGA-OY-A56Q-01 2 74328541 74328541 C T TET3 Silent p.F1407F 0.14 TCGA-OY-A56Q-01 2 90139299 90139299 A T IGKV1D-16 Missense_Mutation p.I24F 0.12 deleterious(0) probably_damaging(0.912) TCGA-OY-A56Q-01 3 123021905 123021905 G A ADCY5 Silent p.P907P 0.10 TCGA-OY-A56Q-01 3 126748300 126748300 G A PLXNA1 Silent p.S1597S 0.08 TCGA-OY-A56Q-01 3 138352075 138352075 C A FAIM 3'UTR 0.17 TCGA-OY-A56Q-01 3 196236406 196236406 G A SMCO1 Missense_Mutation p.A62V 0.22 deleterious(0.01) probably_damaging(0.942) TCGA-OY-A56Q-01 3 51497215 51497215 C T VPRBP Missense_Mutation p.R97Q 0.09 deleterious(0.02) possibly_damaging(0.585) TCGA-OY-A56Q-01 4 123113489 123113489 G T KIAA1109 Missense_Mutation p.G336V 0.24 possibly_damaging(0.878) TCGA-OY-A56Q-01 4 185038181 185038181 C T ENPP6 Missense_Mutation p.G228D 0.26 tolerated(0.28) benign(0.014) TCGA-OY-A56Q-01 5 11346615 11346615 G A CTNND2 Silent p.Y499Y 0.21 TCGA-OY-A56Q-01 5 140250187 140250187 A C PCDHA11 Missense_Mutation p.D500A 0.49 deleterious_low_confidence(0.02) benign(0.083) TCGA-OY-A56Q-01 5 140503695 140503695 C T PCDHB4 Silent p.L705L 0.24 TCGA-OY-A56Q-01 5 174156341 174156341 A - MSX2 Frame_Shift_Del p.I188Sfs*21 0.17 TCGA-OY-A56Q-01 6 24843673 24843673 T A FAM65B Missense_Mutation p.H446L 0.09 tolerated(0.47) benign(0) TCGA-OY-A56Q-01 6 26199244 26199244 C G HIST1H2AD Missense_Mutation p.K76N 0.08 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-OY-A56Q-01 6 32153204 32153204 C A PBX2 3'UTR 0.50 TCGA-OY-A56Q-01 6 82461469 82461469 G A FAM46A Silent p.H130H 0.20 TCGA-OY-A56Q-01 7 1533402 1533402 C T INTS1 Missense_Mutation p.V686M 0.08 deleterious(0.02) benign(0.026) TCGA-OY-A56Q-01 7 19737830 19737830 C G TWISTNB 3'UTR 0.19 TCGA-OY-A56Q-01 7 2274960 2274960 C T FTSJ2 Missense_Mutation p.V180M 0.12 tolerated(0.46) benign(0.004) TCGA-OY-A56Q-01 8 13357596 13357596 C A DLC1 5'UTR 0.15 TCGA-OY-A56Q-01 8 42274328 42274328 C T SLC20A2 3'UTR 0.21 TCGA-OY-A56Q-01 8 43053093 43053093 C G HGSNAT Missense_Mutation p.P575R 0.26 deleterious(0) probably_damaging(0.957) TCGA-OY-A56Q-01 9 100672273 100672273 G A C9orf156 Silent p.A345A 0.21 TCGA-OY-A56Q-01 9 713330 713330 C T KANK1 Missense_Mutation p.P855L 0.07 deleterious(0.03) probably_damaging(0.986) TCGA-OY-A56Q-01 9 77377208 77377208 C T TRPM6 Missense_Mutation p.G1460D 0.76 tolerated_low_confidence(0.11) benign(0.011) TCGA-OY-A56Q-01 X 151815586 151815586 G A GABRQ Missense_Mutation p.V162M 1.00 tolerated(1) benign(0.218) TCGA-OY-A56Q-01 X 155239804 155239804 C G IL9R Missense_Mutation p.S432R 0.11 tolerated_low_confidence(0.09) possibly_damaging(0.883) TCGA-OY-A56Q-01 X 53644026 53644026 A G HUWE1 Missense_Mutation p.F621S 0.91 probably_damaging(0.999) TCGA-OY-A56Q-01 X 54265329 54265329 G T WNK3 Missense_Mutation p.S1285R 0.73 deleterious(0) probably_damaging(0.999) TCGA-VG-A8LO-01 10 102777893 102777898 GCTCCC - PDZD7 In_Frame_Del p.G494_S495del 0.28 TCGA-VG-A8LO-01 10 103530261 103530261 C T FGF8 Missense_Mutation p.R187Q 0.41 deleterious(0.01) probably_damaging(0.92) TCGA-VG-A8LO-01 10 104184910 104184910 A T CUEDC2 Silent p.L12L 0.45 TCGA-VG-A8LO-01 10 15254593 15254593 G C FAM171A1 3'UTR 0.30 TCGA-VG-A8LO-01 10 3823685 3823685 C A KLF6 Intron 0.36 TCGA-VG-A8LO-01 11 1013947 1013947 G A MUC6 Missense_Mutation p.A2365V 0.74 unknown(0) TCGA-VG-A8LO-01 11 117299132 117299132 T A DSCAML1 Missense_Mutation p.D2085V 0.67 deleterious_low_confidence(0) benign(0.143) TCGA-VG-A8LO-01 11 128839270 128839270 T A ARHGAP32 Missense_Mutation p.Q1932H 0.15 tolerated_low_confidence(0.19) possibly_damaging(0.736) TCGA-VG-A8LO-01 11 57080500 57080500 C T TNKS1BP1 Silent p.Q554Q 0.48 TCGA-VG-A8LO-01 11 57413842 57413842 G C YPEL4 Silent p.L74L 0.27 TCGA-VG-A8LO-01 11 76868346 76868346 C A MYO7A Missense_Mutation p.H253N 0.27 deleterious(0) probably_damaging(0.996) TCGA-VG-A8LO-01 11 93399876 93399876 G C KIAA1731 Translation_Start_Site p.M1? 0.46 deleterious(0) probably_damaging(0.995) TCGA-VG-A8LO-01 12 10531226 10531226 T - KLRK1 Frame_Shift_Del p.N119Tfs*17 0.25 TCGA-VG-A8LO-01 12 32135027 32135031 TCAAA - KIAA1551 Frame_Shift_Del p.N381Sfs*16 0.43 TCGA-VG-A8LO-01 12 49226324 49226324 C T DDX23 Silent p.A612A 0.39 TCGA-VG-A8LO-01 12 62892795 62892795 G C MON2 Missense_Mutation p.E178Q 0.54 deleterious(0) probably_damaging(0.994) TCGA-VG-A8LO-01 13 67801898 67801898 C A PCDH9 Missense_Mutation p.E225D 0.17 tolerated(0.11) probably_damaging(0.999) TCGA-VG-A8LO-01 13 98896988 98896988 T A FARP1 Intron 0.32 TCGA-VG-A8LO-01 14 42236142 42236142 T C LRFN5 5'UTR 0.70 TCGA-VG-A8LO-01 14 69254838 69254838 A C ZFP36L1 3'UTR 0.86 TCGA-VG-A8LO-01 14 92454655 92454655 C G TRIP11 Missense_Mutation p.E1745Q 0.36 tolerated(0.06) possibly_damaging(0.478) TCGA-VG-A8LO-01 15 102249007 102249007 C T TARSL2 Missense_Mutation p.E307K 0.39 tolerated(0.21) benign(0.005) TCGA-VG-A8LO-01 15 43020204 43020204 C T CDAN1 Missense_Mutation p.V966M 0.46 deleterious(0.03) probably_damaging(0.991) TCGA-VG-A8LO-01 15 91510314 91510314 C G PRC1 3'UTR 0.47 TCGA-VG-A8LO-01 15 93541740 93541740 G A CHD2 Silent p.V1299V 0.44 TCGA-VG-A8LO-01 16 3929978 3929978 G A CREBBP 5'UTR 0.88 TCGA-VG-A8LO-01 16 46782001 46782001 C T MYLK3 Silent p.K35K 0.57 TCGA-VG-A8LO-01 16 58030761 58030763 GAG - ZNF319 In_Frame_Del p.S471del 0.33 TCGA-VG-A8LO-01 17 10417403 10417403 C T MYH1 Missense_Mutation p.R191H 0.83 tolerated(0.09) benign(0.01) TCGA-VG-A8LO-01 17 45820491 45820491 G A TBX21 Missense_Mutation p.R234H 0.80 deleterious(0) benign(0.111) TCGA-VG-A8LO-01 17 72960674 72960674 G T HID1 Silent p.A40A 0.79 TCGA-VG-A8LO-01 17 74077573 74077573 G A EXOC7 3'Flank 0.94 TCGA-VG-A8LO-01 17 74942457 74942457 G T MGAT5B Splice_Site p.X626_splice 0.98 TCGA-VG-A8LO-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.94 deleterious(0) probably_damaging(1) TCGA-VG-A8LO-01 18 24035080 24035080 A G KCTD1 3'UTR 0.39 TCGA-VG-A8LO-01 19 1257561 1257561 C T MIDN 3'UTR 0.85 TCGA-VG-A8LO-01 19 16640699 16640712 TGATGAGGGTGGCC - CHERP Splice_Site p.X293_splice 0.23 TCGA-VG-A8LO-01 19 34843641 34843641 C G KIAA0355 Silent p.L998L 0.46 TCGA-VG-A8LO-01 19 36607049 36607049 T G TBCB Missense_Mutation p.L74R 0.30 deleterious(0) probably_damaging(0.997) TCGA-VG-A8LO-01 19 4170175 4170175 G C CREB3L3 Missense_Mutation p.R287T 0.54 deleterious(0) probably_damaging(0.986) TCGA-VG-A8LO-01 19 45324221 45324221 G C BCAM 3'UTR 0.62 TCGA-VG-A8LO-01 19 53117081 53117081 G A ZNF83 Missense_Mutation p.S246F 0.49 deleterious(0.01) probably_damaging(0.982) TCGA-VG-A8LO-01 19 54395818 54395818 G C PRKCG Missense_Mutation p.D248H 0.49 deleterious(0.01) probably_damaging(0.979) TCGA-VG-A8LO-01 19 610371 610371 G A HCN2 Missense_Mutation p.S517N 0.10 tolerated(0.4) benign(0.002) TCGA-VG-A8LO-01 19 6693037 6693037 G T C3 Missense_Mutation p.D1096E 0.40 tolerated(0.3) benign(0.002) TCGA-VG-A8LO-01 19 8645770 8645770 G C ADAMTS10 3'UTR 0.40 TCGA-VG-A8LO-01 1 10240859 10240860 - T UBE4B 3'UTR 0.26 TCGA-VG-A8LO-01 1 151414616 151414616 C G POGZ Missense_Mutation p.S22T 0.20 tolerated(0.16) probably_damaging(0.93) TCGA-VG-A8LO-01 1 166991088 166991088 C A MAEL Missense_Mutation p.S434Y 0.25 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-VG-A8LO-01 1 18812358 18812358 G A KLHDC7A 3'UTR 0.49 TCGA-VG-A8LO-01 1 190250791 190250791 C T BRINP3 Missense_Mutation p.R109H 0.32 tolerated(0.18) probably_damaging(0.998) TCGA-VG-A8LO-01 1 202283944 202283944 G C LGR6 Missense_Mutation p.D528H 0.30 deleterious(0.01) possibly_damaging(0.738) TCGA-VG-A8LO-01 1 202301005 202301005 A C UBE2T Missense_Mutation p.S184R 0.32 tolerated_low_confidence(0.66) benign(0.001) TCGA-VG-A8LO-01 1 205241072 205241072 C T TMCC2 Silent p.I650I 0.21 TCGA-VG-A8LO-01 1 231344823 231344823 G A TRIM67 Silent p.V650V 0.24 TCGA-VG-A8LO-01 1 247836148 247836148 C A OR13G1 Missense_Mutation p.V66L 0.20 tolerated(1) benign(0.087) TCGA-VG-A8LO-01 1 39877463 39877463 A C KIAA0754 Missense_Mutation p.H373P 0.42 benign(0.001) TCGA-VG-A8LO-01 1 46867821 46867821 A G FAAH Missense_Mutation p.K85R 0.42 tolerated(0.19) probably_damaging(0.988) TCGA-VG-A8LO-01 1 7840135 7840135 A G VAMP3 3'UTR 0.48 TCGA-VG-A8LO-01 20 2732414 2732414 G A EBF4 Missense_Mutation p.D359N 0.55 deleterious(0.01) probably_damaging(0.953) TCGA-VG-A8LO-01 20 3146371 3146371 G C LZTS3 Silent p.A365A 0.32 TCGA-VG-A8LO-01 20 33642831 33642831 C T TRPC4AP Missense_Mutation p.S159N 0.09 tolerated(0.51) benign(0.009) TCGA-VG-A8LO-01 20 35396431 35396431 T G DSN1 Missense_Mutation p.I124L 0.38 deleterious(0) probably_damaging(0.998) TCGA-VG-A8LO-01 21 10906971 10906971 A T TPTE Missense_Mutation p.D530E 0.23 tolerated(1) benign(0.004) TCGA-VG-A8LO-01 21 45774582 45774582 G T TRPM2 Missense_Mutation p.V73L 0.50 tolerated(0.17) benign(0.012) TCGA-VG-A8LO-01 2 130737431 130737431 C A RAB6C 5'UTR 0.09 TCGA-VG-A8LO-01 2 149241088 149241088 G C MBD5 Intron 0.44 TCGA-VG-A8LO-01 2 152500427 152500427 C T NEB Missense_Mutation p.D2621N 0.42 probably_damaging(0.947) TCGA-VG-A8LO-01 2 233405345 233405345 C T CHRNG Nonsense_Mutation p.R92* 0.51 TCGA-VG-A8LO-01 2 238262003 238262003 T G COL6A3 Missense_Mutation p.Q2224P 0.35 benign(0) TCGA-VG-A8LO-01 2 239057718 239057718 C T KLHL30 Silent p.H470H 0.33 TCGA-VG-A8LO-01 2 65300114 65300114 G T CEP68 Missense_Mutation p.K628N 0.48 deleterious(0) probably_damaging(0.949) TCGA-VG-A8LO-01 2 9545025 9545025 A T ITGB1BP1 3'UTR 0.04 TCGA-VG-A8LO-01 3 11300958 11300958 G A HRH1 Missense_Mutation p.V79I 0.29 tolerated(0.16) benign(0.021) TCGA-VG-A8LO-01 3 113508655 113508655 C T ATP6V1A Missense_Mutation p.P319L 0.60 deleterious(0) probably_damaging(1) TCGA-VG-A8LO-01 3 138023770 138023770 G A NME9 Nonsense_Mutation p.R185* 0.88 TCGA-VG-A8LO-01 3 149193670 149193670 G A TM4SF4 Missense_Mutation p.G79S 0.32 deleterious(0.05) probably_damaging(0.982) TCGA-VG-A8LO-01 3 16261465 16261465 G T GALNT15 Missense_Mutation p.D525Y 0.41 deleterious(0.01) possibly_damaging(0.646) TCGA-VG-A8LO-01 3 38294914 38294914 C T OXSR1 3'UTR 0.39 TCGA-VG-A8LO-01 3 43073931 43073931 A G FAM198A Missense_Mutation p.H59R 0.36 tolerated_low_confidence(0.38) benign(0.005) TCGA-VG-A8LO-01 3 48507023 48507023 C T ATRIP 3'UTR 0.57 TCGA-VG-A8LO-01 3 49044447 49044460 GCCCCACCCCGCCA - P4HTM 3'UTR 0.52 TCGA-VG-A8LO-01 3 49201137 49201137 C T CCDC71 Missense_Mutation p.V169I 0.35 deleterious(0.04) possibly_damaging(0.47) TCGA-VG-A8LO-01 3 52245377 52245377 G T ALAS1 Missense_Mutation p.G470V 0.44 deleterious(0) probably_damaging(1) TCGA-VG-A8LO-01 3 57330902 57330902 A C ASB14 5'Flank 0.43 TCGA-VG-A8LO-01 3 72897412 72897412 G C SHQ1 Missense_Mutation p.S27C 0.41 deleterious(0) probably_damaging(0.984) TCGA-VG-A8LO-01 3 86990142 86990142 T G VGLL3 3'UTR 0.36 TCGA-VG-A8LO-01 4 38990579 38990579 A G TMEM156 Missense_Mutation p.S211P 0.54 tolerated(0.1) benign(0.126) TCGA-VG-A8LO-01 4 39863937 39863937 C A PDS5A Silent p.L996L 0.40 TCGA-VG-A8LO-01 4 62542573 62542573 T G LPHN3 Missense_Mutation p.V100G 0.46 deleterious(0.05) probably_damaging(0.98) TCGA-VG-A8LO-01 5 156788557 156788557 G C CYFIP2 Missense_Mutation p.R971T 0.09 deleterious(0) probably_damaging(0.994) TCGA-VG-A8LO-01 5 160717971 160717971 G T GABRB2 3'UTR 0.37 TCGA-VG-A8LO-01 5 31504700 31504700 G C DROSHA Missense_Mutation p.R544G 0.54 deleterious(0) possibly_damaging(0.621) TCGA-VG-A8LO-01 5 34796051 34796051 C G RAI14 Missense_Mutation p.L62V 0.43 tolerated(0.4) probably_damaging(0.999) TCGA-VG-A8LO-01 5 72798416 72798416 G C BTF3 Missense_Mutation p.G102A 0.04 tolerated(0.14) possibly_damaging(0.633) TCGA-VG-A8LO-01 6 133049913 133049913 A C VNN3 Missense_Mutation p.D168E 0.31 deleterious(0.01) possibly_damaging(0.606) TCGA-VG-A8LO-01 6 33739985 33739985 G A LEMD2 3'UTR 0.68 TCGA-VG-A8LO-01 7 111368663 111368663 C T DOCK4 Silent p.R1856R 0.46 TCGA-VG-A8LO-01 7 123514866 123514866 A T HYAL4 Missense_Mutation p.I336F 0.43 tolerated(0.37) benign(0.036) TCGA-VG-A8LO-01 7 128317628 128317628 C G FAM71F2 Missense_Mutation p.L126V 0.05 deleterious(0) possibly_damaging(0.897) TCGA-VG-A8LO-01 7 131888158 131888158 C T PLXNA4 Silent p.E773E 0.44 TCGA-VG-A8LO-01 7 27148154 27148154 A T HOXA3 Missense_Mutation p.W238R 0.50 deleterious(0) probably_damaging(0.961) TCGA-VG-A8LO-01 7 73151910 73151910 C T ABHD11 Missense_Mutation p.M148I 0.42 deleterious(0) probably_damaging(0.99) TCGA-VG-A8LO-01 7 87043027 87043027 T C ABCB4 Missense_Mutation p.T897A 0.46 tolerated(0.05) benign(0.11) TCGA-VG-A8LO-01 8 142441152 142441152 C G PTP4A3 3'UTR 0.15 TCGA-VG-A8LO-01 8 146075924 146075924 A C COMMD5 3'UTR 0.21 TCGA-VG-A8LO-01 8 146075925 146075925 A T COMMD5 3'UTR 0.21 TCGA-VG-A8LO-01 8 71078817 71078817 G A NCOA2 Silent p.I238I 0.22 TCGA-VG-A8LO-01 8 86354306 86354307 GA T CA3 Frame_Shift_Del p.R80Efs*55 0.28 TCGA-VG-A8LO-01 9 119382594 119382594 C A ASTN2 Missense_Mutation p.Q1016H 0.28 tolerated(0.29) unknown(0) TCGA-VG-A8LO-01 9 133542052 133542052 C G PRDM12 Missense_Mutation p.S94C 0.34 deleterious(0.03) possibly_damaging(0.873) TCGA-VG-A8LO-01 9 90535198 90535198 T A SPATA31C1 RNA 0.35 TCGA-VG-A8LO-01 X 56590611 56590611 T A UBQLN2 Missense_Mutation p.I102N 0.36 deleterious(0) probably_damaging(1) TCGA-WR-A838-01 10 15561382 15561382 C T ITGA8 Silent p.P1004P 0.22 TCGA-WR-A838-01 10 51225041 51225041 C A AGAP8 Missense_Mutation p.Q647H 0.36 tolerated(0.07) probably_damaging(0.986) TCGA-WR-A838-01 10 5948342 5948342 A G FBXO18 Missense_Mutation p.E218G 0.45 tolerated(0.09) benign(0.005) TCGA-WR-A838-01 10 73500652 73500652 A G CDH23 Missense_Mutation p.N1526S 0.19 deleterious(0.02) possibly_damaging(0.451) TCGA-WR-A838-01 10 87373284 87373284 C A GRID1 Missense_Mutation p.K827N 0.50 tolerated(0.18) benign(0.243) TCGA-WR-A838-01 11 32126347 32126347 G T RCN1 3'UTR 0.33 TCGA-WR-A838-01 11 4936759 4936759 C T OR51G2 Silent p.P45P 0.50 TCGA-WR-A838-01 11 50003874 50003874 G T OR4C12 Missense_Mutation p.S55Y 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.877) TCGA-WR-A838-01 11 5530474 5530474 G T UBQLN3 Silent p.A105A 0.18 TCGA-WR-A838-01 11 58207394 58207394 G T OR5B12 Silent p.P77P 0.11 TCGA-WR-A838-01 11 67259394 67259394 G - PITPNM1 3'UTR 0.11 TCGA-WR-A838-01 11 87032871 87032871 A G TMEM135 3'UTR 0.23 TCGA-WR-A838-01 12 4919723 4919723 G A KCNA6 Silent p.P172P 0.14 TCGA-WR-A838-01 12 56743547 56743547 A C STAT2 Intron 0.30 TCGA-WR-A838-01 13 102029127 102029127 G A NALCN Missense_Mutation p.L190F 0.08 tolerated(0.13) benign(0.106) TCGA-WR-A838-01 13 44456491 44456491 C T LACC1 Nonsense_Mutation p.R245* 0.28 TCGA-WR-A838-01 14 64593373 64593373 C G SYNE2 Missense_Mutation p.L4589V 0.20 benign(0.319) TCGA-WR-A838-01 15 27188474 27188474 C T GABRA5 Silent p.F330F 0.72 TCGA-WR-A838-01 15 31294516 31294516 C T TRPM1 Missense_Mutation p.V1480I 0.29 tolerated_low_confidence(0.55) benign(0.004) TCGA-WR-A838-01 17 3786360 3786360 G A CAMKK1 Silent p.H208H 0.11 TCGA-WR-A838-01 17 7578442 7578442 T C TP53 Missense_Mutation p.Y163C 0.25 deleterious(0) probably_damaging(0.999) TCGA-WR-A838-01 17 7578549 7578550 GG T TP53 Frame_Shift_Del p.S127Yfs*43 0.50 TCGA-WR-A838-01 18 12277132 12277132 C T CIDEA Missense_Mutation p.R175W 0.10 deleterious(0.01) probably_damaging(0.981) TCGA-WR-A838-01 19 16980423 16980423 C T SIN3B Silent p.G685G 0.19 TCGA-WR-A838-01 19 39926531 39926531 G C RPS16 Missense_Mutation p.P2R 0.16 tolerated_low_confidence(0.11) benign(0.109) TCGA-WR-A838-01 19 50655894 50655894 C T IZUMO2 Missense_Mutation p.R213K 0.13 deleterious(0) benign(0.14) TCGA-WR-A838-01 19 54650350 54650350 A G CNOT3 Missense_Mutation p.D284G 0.15 deleterious(0.02) possibly_damaging(0.877) TCGA-WR-A838-01 19 8530345 8530345 G T HNRNPM Missense_Mutation p.E192D 0.18 deleterious(0.03) benign(0.22) TCGA-WR-A838-01 1 110717556 110717556 G A SLC6A17 Missense_Mutation p.V243I 0.53 tolerated(1) benign(0.001) TCGA-WR-A838-01 1 156163878 156163878 A G SLC25A44 5'Flank 0.22 TCGA-WR-A838-01 1 16073454 16073454 C T TMEM82 Missense_Mutation p.R284C 0.32 deleterious(0.04) benign(0.051) TCGA-WR-A838-01 1 16957415 16957415 G A CROCCP2 RNA 0.10 TCGA-WR-A838-01 1 197127107 197127108 - T ZBTB41 3'UTR 0.20 TCGA-WR-A838-01 20 30661571 30661571 C T HCK Silent p.H93H 0.31 TCGA-WR-A838-01 20 56935158 56935158 G A RAB22A 3'UTR 0.17 TCGA-WR-A838-01 2 114351787 114351787 C T WASH2P RNA 0.14 TCGA-WR-A838-01 2 204291931 204291931 G - ABI2 Frame_Shift_Del p.E429Kfs*27 0.27 TCGA-WR-A838-01 2 210561432 210561432 A G MAP2 Silent p.E1449E 0.72 TCGA-WR-A838-01 2 30481932 30481932 G A LBH 3'UTR 0.18 TCGA-WR-A838-01 2 96919035 96919035 G C TMEM127 3'UTR 0.36 TCGA-WR-A838-01 3 195505834 195505834 G A MUC4 Missense_Mutation p.A4206V 0.10 unknown(0) TCGA-WR-A838-01 3 27161279 27161279 T C NEK10 Silent p.G1111G 0.12 TCGA-WR-A838-01 3 64083154 64083154 T C PRICKLE2 3'UTR 0.23 TCGA-WR-A838-01 3 65376868 65376869 - T MAGI1 Frame_Shift_Ins p.P789Tfs*5 0.24 TCGA-WR-A838-01 4 108817056 108817056 A G SGMS2 Missense_Mutation p.K116R 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-WR-A838-01 4 144917413 144917413 C T GYPB 3'UTR 0.11 TCGA-WR-A838-01 4 54362318 54362318 T C LNX1 Missense_Mutation p.I408V 0.59 tolerated(0.19) benign(0.075) TCGA-WR-A838-01 5 114916798 114916798 T A TMED7-TICAM2 Silent p.T221T 0.44 TCGA-WR-A838-01 5 140725739 140725739 G C PCDHGA3 Silent p.A713A 0.75 TCGA-WR-A838-01 5 140807351 140807351 G A PCDHGB6 Intron 0.58 TCGA-WR-A838-01 7 4917323 4917323 G A RADIL Nonsense_Mutation p.R150* 0.27 TCGA-WR-A838-01 8 75764239 75764239 A T PI15 3'UTR 0.62 TCGA-WR-A838-01 9 130271336 130271336 C T FAM129B Silent p.L412L 0.28 TCGA-WR-A838-01 X 44703350 44703350 C T DUSP21 5'UTR 0.25 TCGA-WR-A838-01 X 55289722 55289722 G A PAGE3 Missense_Mutation p.P52L 0.31 deleterious(0.02) benign(0.101)