sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-2J-AAB1-01 10 1149626 1149626 C A WDR37 Missense_Mutation p.R271S 0.18 deleterious(0) probably_damaging(0.982) TCGA-2J-AAB1-01 10 21098813 21098813 G A NEBL Missense_Mutation p.R845C 0.23 deleterious(0) probably_damaging(0.996) TCGA-2J-AAB1-01 10 27324564 27324565 - T ANKRD26 Frame_Shift_Ins p.E939Rfs*6 0.16 TCGA-2J-AAB1-01 11 108382677 108382678 - G EXPH5 Frame_Shift_Ins p.Q1186Pfs*5 0.17 TCGA-2J-AAB1-01 11 1213464 1213465 - G MUC5AC RNA 0.09 TCGA-2J-AAB1-01 11 122659916 122659916 G A UBASH3B Missense_Mutation p.G294S 0.19 deleterious(0) probably_damaging(1) TCGA-2J-AAB1-01 11 122667627 122667627 A G UBASH3B Missense_Mutation p.I415V 0.05 tolerated(0.58) benign(0) TCGA-2J-AAB1-01 11 12534985 12534985 G T PARVA Intron 0.05 TCGA-2J-AAB1-01 11 5475025 5475025 C A OR51I2 Missense_Mutation p.L103I 0.18 deleterious(0.01) benign(0.146) TCGA-2J-AAB1-01 11 5475027 5475027 T A OR51I2 Silent p.L103L 0.17 TCGA-2J-AAB1-01 11 55905125 55905125 G T OR8J3 Missense_Mutation p.Q24K 0.19 tolerated(0.12) probably_damaging(0.993) TCGA-2J-AAB1-01 12 112374530 112374530 A T TMEM116 Missense_Mutation p.L185Q 0.18 deleterious(0) probably_damaging(1) TCGA-2J-AAB1-01 12 113711435 113711435 G A TPCN1 Missense_Mutation p.V374M 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-2J-AAB1-01 12 132635870 132635870 C T NOC4L Missense_Mutation p.R344C 0.17 deleterious(0) probably_damaging(0.998) TCGA-2J-AAB1-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.12 deleterious(0.03) benign(0.376) TCGA-2J-AAB1-01 12 57919654 57919666 GGGGCCCCTGGGA - MBD6 Frame_Shift_Del p.L304Pfs*69 0.10 TCGA-2J-AAB1-01 12 85255590 85255590 C T SLC6A15 Missense_Mutation p.D672N 0.20 tolerated(0.11) probably_damaging(0.998) TCGA-2J-AAB1-01 12 95922666 95922666 G A USP44 Missense_Mutation p.P514L 0.17 tolerated(0.2) benign(0.099) TCGA-2J-AAB1-01 13 47266683 47266683 G T LRCH1 Missense_Mutation p.D343Y 0.19 deleterious(0.01) probably_damaging(1) TCGA-2J-AAB1-01 13 66878827 66878827 G A PCDH9 Missense_Mutation p.A1225V 0.21 deleterious(0.04) benign(0) TCGA-2J-AAB1-01 13 70535555 70535555 G A KLHL1 Silent p.S234S 0.12 TCGA-2J-AAB1-01 14 102028329 102028329 G A DIO3 Missense_Mutation p.G166S 0.05 deleterious(0) possibly_damaging(0.854) TCGA-2J-AAB1-01 14 107078513 107078513 C T IGHV1-58 Missense_Mutation p.V71I 0.21 benign(0) TCGA-2J-AAB1-01 14 20248817 20248817 G A OR4M1 Missense_Mutation p.M112I 0.06 tolerated(0.95) benign(0.009) TCGA-2J-AAB1-01 15 44028268 44028268 C T RNU6-354P 5'Flank 0.22 TCGA-2J-AAB1-01 16 1256207 1256207 C A CACNA1H Missense_Mutation p.R903S 0.18 deleterious(0) probably_damaging(0.999) TCGA-2J-AAB1-01 16 1256208 1256208 G A CACNA1H Missense_Mutation p.R903H 0.18 deleterious(0) probably_damaging(0.999) TCGA-2J-AAB1-01 16 615296 615296 G A C16orf11 Missense_Mutation p.A569T 0.24 tolerated_low_confidence(0.12) benign(0.146) TCGA-2J-AAB1-01 16 67006841 67006841 C T CES3 Silent p.A535A 0.05 TCGA-2J-AAB1-01 17 1840902 1840902 C T RTN4RL1 Missense_Mutation p.G72S 0.16 deleterious(0.03) probably_damaging(0.984) TCGA-2J-AAB1-01 17 39596894 39596894 C T KRT38 Missense_Mutation p.A94T 0.18 tolerated(0.24) benign(0.002) TCGA-2J-AAB1-01 17 4544868 4544868 C G ALOX15 Missense_Mutation p.V27L 0.18 deleterious(0.01) possibly_damaging(0.667) TCGA-2J-AAB1-01 18 7023334 7023334 C T LAMA1 Missense_Mutation p.E844K 0.23 deleterious(0.02) benign(0.009) TCGA-2J-AAB1-01 19 14006194 14006194 G A C19orf57 Missense_Mutation p.A66V 0.16 tolerated(0.14) benign(0.001) TCGA-2J-AAB1-01 19 55899358 55899358 C T RPL28 Missense_Mutation p.T89M 0.04 tolerated(0.14) possibly_damaging(0.861) TCGA-2J-AAB1-01 1 114454068 114454068 T G DCLRE1B Missense_Mutation p.F285C 0.17 deleterious(0) probably_damaging(1) TCGA-2J-AAB1-01 1 118550780 118550780 G A SPAG17 Missense_Mutation p.R1492W 0.08 deleterious(0.02) benign(0.193) TCGA-2J-AAB1-01 1 152382863 152382863 G A CRNN Missense_Mutation p.T232I 0.18 deleterious(0.03) possibly_damaging(0.472) TCGA-2J-AAB1-01 1 161953983 161953983 G A OLFML2B Missense_Mutation p.R579C 0.18 deleterious(0) probably_damaging(0.988) TCGA-2J-AAB1-01 1 201981145 201981145 G A ELF3 Nonsense_Mutation p.W75* 0.16 TCGA-2J-AAB1-01 1 6279452 6279452 G A RNF207 Silent p.R630R 0.23 TCGA-2J-AAB1-01 1 75622617 75622617 G A LHX8 Missense_Mutation p.V284I 0.03 tolerated(0.32) benign(0.018) TCGA-2J-AAB1-01 1 94497517 94497517 C T ABCA4 Silent p.Q1315Q 0.05 TCGA-2J-AAB1-01 1 98205957 98205957 A C DPYD Missense_Mutation p.I104M 0.17 deleterious(0) probably_damaging(1) TCGA-2J-AAB1-01 20 37653909 37653909 C G DHX35 Missense_Mutation p.L570V 0.19 tolerated(0.14) benign(0.215) TCGA-2J-AAB1-01 20 40085993 40085993 C T CHD6 Missense_Mutation p.E914K 0.20 deleterious(0.01) probably_damaging(0.946) TCGA-2J-AAB1-01 21 40578077 40578077 G A BRWD1 Missense_Mutation p.R1441W 0.18 deleterious(0) possibly_damaging(0.549) TCGA-2J-AAB1-01 22 26736580 26736580 T C SEZ6L Missense_Mutation p.F732L 0.15 deleterious(0.02) benign(0.097) TCGA-2J-AAB1-01 22 50538027 50538027 C T MOV10L1 Silent p.C146C 0.17 TCGA-2J-AAB1-01 2 121740416 121740416 C T GLI2 Missense_Mutation p.S548L 0.14 deleterious(0) probably_damaging(0.992) TCGA-2J-AAB1-01 2 149542414 149542414 A G EPC2 Missense_Mutation p.H732R 0.10 tolerated(0.85) benign(0.009) TCGA-2J-AAB1-01 2 160087288 160087288 C T TANC1 Missense_Mutation p.T1784I 0.22 tolerated_low_confidence(0.27) benign(0.001) TCGA-2J-AAB1-01 2 178762794 178762794 G A PDE11A Silent p.I431I 0.22 TCGA-2J-AAB1-01 2 220239025 220239025 A C DNPEP Missense_Mutation p.L483V 0.17 tolerated(0.65) benign(0.001) TCGA-2J-AAB1-01 2 228762908 228762908 G A DAW1 Missense_Mutation p.A151T 0.14 tolerated(0.13) probably_damaging(0.982) TCGA-2J-AAB1-01 2 38812916 38812916 G A HNRNPLL Missense_Mutation p.A134V 0.03 deleterious(0) probably_damaging(0.958) TCGA-2J-AAB1-01 2 49189831 49189831 G T FSHR 3'UTR 0.06 TCGA-2J-AAB1-01 2 68622834 68622834 C - PLEK Frame_Shift_Del p.L314Ffs*48 0.22 TCGA-2J-AAB1-01 2 89340177 89340177 C T IGKV1-12 Missense_Mutation p.A7T 0.16 tolerated(0.52) benign(0.004) TCGA-2J-AAB1-01 3 183855998 183855998 T C EIF2B5 Silent p.D243D 0.04 TCGA-2J-AAB1-01 3 30732957 30732957 G T TGFBR2 Missense_Mutation p.D549Y 0.38 deleterious(0) probably_damaging(1) TCGA-2J-AAB1-01 3 42727555 42727555 G A KLHL40 Missense_Mutation p.A149T 0.43 deleterious(0.04) possibly_damaging(0.547) TCGA-2J-AAB1-01 3 51400102 51400102 C T DOCK3 Nonsense_Mutation p.R1764* 0.33 TCGA-2J-AAB1-01 4 46979145 46979145 C T GABRA4 Silent p.A170A 0.15 TCGA-2J-AAB1-01 4 68699089 68699089 G A TMPRSS11D Silent p.A175A 0.03 TCGA-2J-AAB1-01 5 112176765 112176765 A G APC Missense_Mutation p.D1825G 0.20 benign(0.115) TCGA-2J-AAB1-01 5 140229874 140229874 C T PCDHA9 Silent p.D598D 0.19 TCGA-2J-AAB1-01 5 140230003 140230003 C T PCDHA9 Silent p.D641D 0.14 TCGA-2J-AAB1-01 5 151271898 151271898 T A GLRA1 Missense_Mutation p.D53V 0.04 deleterious(0) probably_damaging(0.986) TCGA-2J-AAB1-01 5 5242275 5242275 G A ADAMTS16 Missense_Mutation p.R878H 0.14 tolerated(0.22) benign(0.002) TCGA-2J-AAB1-01 5 9197372 9197372 C T SEMA5A Missense_Mutation p.A326T 0.12 deleterious(0) possibly_damaging(0.705) TCGA-2J-AAB1-01 7 149513539 149513539 G A SSPO RNA 0.17 TCGA-2J-AAB1-01 7 150845978 150845978 G A GBX1 Missense_Mutation p.R264C 0.04 deleterious(0) probably_damaging(1) TCGA-2J-AAB1-01 8 54141837 54141837 G A OPRK1 3'UTR 0.17 TCGA-2J-AAB1-01 9 139836995 139836995 G A FBXW5 Intron 0.16 TCGA-2J-AAB1-01 9 140146549 140146550 - C C9orf173 Frame_Shift_Ins p.H124Pfs*35 0.23 TCGA-2J-AAB1-01 9 34256356 34256356 C G KIF24 Missense_Mutation p.E1083D 0.06 tolerated(0.15) benign(0.205) TCGA-2J-AAB1-01 X 119674244 119674244 A C CUL4B Missense_Mutation p.N557K 0.32 deleterious(0) possibly_damaging(0.627) TCGA-2J-AAB1-01 X 70757810 70757810 G A OGT Missense_Mutation p.R117H 0.42 deleterious(0.04) benign(0.128) TCGA-2J-AAB4-01 10 43697262 43697262 A G RASGEF1A Silent p.C151C 0.11 TCGA-2J-AAB4-01 10 44876321 44876321 G A CXCL12 Silent p.P23P 0.14 TCGA-2J-AAB4-01 10 50315941 50315941 C G VSTM4 Missense_Mutation p.R52T 0.08 deleterious(0) probably_damaging(0.999) TCGA-2J-AAB4-01 10 94109589 94109589 A G MARCH5 Missense_Mutation p.I239V 0.12 tolerated(0.19) benign(0.006) TCGA-2J-AAB4-01 11 130343247 130343247 G A ADAMTS15 Missense_Mutation p.R795H 0.24 deleterious(0) probably_damaging(0.989) TCGA-2J-AAB4-01 11 62398507 62398512 AGACTA - GANAB In_Frame_Del p.S403_L404del 0.18 TCGA-2J-AAB4-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.10 deleterious(0) possibly_damaging(0.479) TCGA-2J-AAB4-01 16 21080894 21080894 G A DNAH3 Missense_Mutation p.R1075C 0.13 tolerated(0.07) possibly_damaging(0.849) TCGA-2J-AAB4-01 16 2228635 2228635 C T CASKIN1 Silent p.A1404A 0.12 TCGA-2J-AAB4-01 16 3293521 3293521 C T MEFV Missense_Mutation p.E656K 0.17 deleterious(0) probably_damaging(0.999) TCGA-2J-AAB4-01 17 7100076 7100076 C T DLG4 Silent p.S404S 0.12 TCGA-2J-AAB4-01 17 7578554 7578554 A T TP53 Missense_Mutation p.Y126N 0.19 deleterious(0) probably_damaging(1) TCGA-2J-AAB4-01 18 40853958 40853958 T A SYT4 Missense_Mutation p.T146S 0.17 tolerated(1) benign(0.001) TCGA-2J-AAB4-01 18 48584504 48584504 C - SMAD4 Frame_Shift_Del p.S227Vfs*14 0.20 TCGA-2J-AAB4-01 19 19905821 19905821 T C ZNF506 Missense_Mutation p.K292R 0.13 deleterious(0.04) benign(0.023) TCGA-2J-AAB4-01 19 30433560 30433560 G C URI1 Missense_Mutation p.E36Q 0.14 deleterious(0.02) benign(0.07) TCGA-2J-AAB4-01 19 37368703 37368703 G A ZNF345 Missense_Mutation p.R324K 0.14 tolerated(0.32) benign(0.105) TCGA-2J-AAB4-01 19 43383710 43383710 G A PSG1 Silent p.P8P 0.17 TCGA-2J-AAB4-01 1 107867468 107867468 G A NTNG1 Missense_Mutation p.V271I 0.10 tolerated(0.17) benign(0.022) TCGA-2J-AAB4-01 1 228584522 228584522 C A TRIM11 Intron 0.11 TCGA-2J-AAB4-01 20 2290352 2290352 G T TGM3 Silent p.A19A 0.13 TCGA-2J-AAB4-01 21 43706012 43706012 A G ABCG1 Missense_Mutation p.Q294R 0.13 deleterious(0.01) benign(0.119) TCGA-2J-AAB4-01 2 230312173 230312173 C T DNER Missense_Mutation p.G449R 0.13 tolerated(0.83) benign(0.022) TCGA-2J-AAB4-01 2 61448662 61448662 G A USP34 Missense_Mutation p.S2625F 0.14 deleterious(0.01) possibly_damaging(0.758) TCGA-2J-AAB4-01 3 13679189 13679189 G A FBLN2 Missense_Mutation p.A1156T 0.04 tolerated(0.08) benign(0.3) TCGA-2J-AAB4-01 3 195027287 195027287 G A ACAP2 Nonsense_Mutation p.Q357* 0.13 TCGA-2J-AAB4-01 3 39136218 39136218 G A WDR48 Missense_Mutation p.R673H 0.16 deleterious(0) probably_damaging(0.993) TCGA-2J-AAB4-01 3 64526867 64526867 G A ADAMTS9 Missense_Mutation p.R1809W 0.17 deleterious(0) probably_damaging(1) TCGA-2J-AAB4-01 3 73047308 73047308 A G PPP4R2 Missense_Mutation p.M39V 0.13 tolerated(0.23) benign(0.007) TCGA-2J-AAB4-01 4 5800472 5800472 C T EVC Missense_Mutation p.R753W 0.09 deleterious(0) probably_damaging(1) TCGA-2J-AAB4-01 6 152539461 152539461 T C SYNE1 Missense_Mutation p.I7374M 0.15 benign(0.027) TCGA-2J-AAB4-01 6 29574715 29574715 C T GABBR1 Missense_Mutation p.A726T 0.14 tolerated(0.23) benign(0.027) TCGA-2J-AAB4-01 6 43413586 43413586 C T ABCC10 Missense_Mutation p.R1094C 0.15 deleterious(0) probably_damaging(1) TCGA-2J-AAB4-01 7 131012646 131012646 C T MKLN1 5'UTR 0.20 TCGA-2J-AAB4-01 7 21727066 21727066 C A DNAH11 Silent p.R1956R 0.16 TCGA-2J-AAB4-01 7 43580819 43580819 C T HECW1 Silent p.D1359D 0.10 TCGA-2J-AAB4-01 7 76062797 76062797 C T ZP3 Silent p.N182N 0.17 TCGA-2J-AAB4-01 9 101992661 101992668 TTCTGTAT - SEC61B Frame_Shift_Del p.S83Yfs*57 0.11 TCGA-2J-AAB4-01 9 126144428 126144428 G C DENND1A Silent p.G771G 0.17 TCGA-2J-AAB4-01 9 2718192 2718192 C T KCNV2 Silent p.F151F 0.10 TCGA-2J-AAB4-01 X 144909364 144909364 A C TMEM257 Silent p.R57R 0.41 TCGA-2J-AAB4-01 X 30718984 30718984 G A GK Silent p.V265V 0.31 TCGA-2J-AAB6-01 10 125426411 125426411 C T GPR26 Missense_Mutation p.P163L 0.17 tolerated(0.29) benign(0.008) TCGA-2J-AAB6-01 10 133058648 133058648 C T TCERG1L Missense_Mutation p.A244T 0.17 tolerated(0.24) benign(0.041) TCGA-2J-AAB6-01 10 64136259 64136259 A T ZNF365 Missense_Mutation p.S103C 0.28 deleterious_low_confidence(0.03) probably_damaging(0.965) TCGA-2J-AAB6-01 11 105836750 105836750 G A GRIA4 Intron 0.39 TCGA-2J-AAB6-01 11 120776148 120776148 C T GRIK4 Silent p.G474G 0.40 TCGA-2J-AAB6-01 11 128391808 128391808 C T ETS1 Intron 0.39 TCGA-2J-AAB6-01 11 60235849 60235849 C T MS4A1 Nonsense_Mutation p.Q268* 0.21 TCGA-2J-AAB6-01 11 67262964 67262964 G A PITPNM1 Silent p.A809A 0.26 TCGA-2J-AAB6-01 11 78440582 78440582 G A TENM4 Missense_Mutation p.P1082L 0.21 deleterious(0.03) benign(0.03) TCGA-2J-AAB6-01 12 117914339 117914339 G A KSR2 Missense_Mutation p.R838C 0.20 deleterious(0.02) benign(0.089) TCGA-2J-AAB6-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.53 deleterious(0) possibly_damaging(0.479) TCGA-2J-AAB6-01 12 32861115 32861117 AAG - DNM1L In_Frame_Del p.E110del 0.51 TCGA-2J-AAB6-01 13 25466782 25466782 G A CENPJ Missense_Mutation p.A1072V 0.18 tolerated(0.29) benign(0.001) TCGA-2J-AAB6-01 13 66878849 66878849 T A PCDH9 Missense_Mutation p.N1218Y 0.13 tolerated(0.05) benign(0.037) TCGA-2J-AAB6-01 14 21991588 21991588 C T SALL2 Silent p.P758P 0.16 TCGA-2J-AAB6-01 14 24108419 24108419 C T DHRS2 Missense_Mutation p.R58W 0.21 tolerated(0.05) possibly_damaging(0.84) TCGA-2J-AAB6-01 14 45578898 45578898 T C PRPF39 Missense_Mutation p.I364T 0.18 deleterious(0.04) possibly_damaging(0.461) TCGA-2J-AAB6-01 14 71500186 71500186 T G PCNX Missense_Mutation p.I1200S 0.21 deleterious(0.01) benign(0.208) TCGA-2J-AAB6-01 15 102345944 102345944 G A OR4F6 Missense_Mutation p.V8M 0.27 tolerated_low_confidence(0.1) benign(0.051) TCGA-2J-AAB6-01 15 45410081 45410081 T G DUOXA2 Missense_Mutation p.L313V 0.30 tolerated_low_confidence(0.09) benign(0.002) TCGA-2J-AAB6-01 15 65116102 65116102 G A PIF1 Missense_Mutation p.R145C 0.33 deleterious(0.01) benign(0.298) TCGA-2J-AAB6-01 16 4803036 4803036 C T ZNF500 Missense_Mutation p.G262S 0.19 tolerated(0.07) benign(0.347) TCGA-2J-AAB6-01 16 70866926 70866926 C A HYDIN Missense_Mutation p.S4575I 0.22 benign(0.045) TCGA-2J-AAB6-01 16 84228145 84228145 G A ADAD2 Silent p.A244A 0.54 TCGA-2J-AAB6-01 17 53158469 53158469 C T STXBP4 Missense_Mutation p.R472C 0.28 deleterious(0.01) possibly_damaging(0.726) TCGA-2J-AAB6-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.47 tolerated(0.13) possibly_damaging(0.631) TCGA-2J-AAB6-01 18 24436417 24436417 C T AQP4 Missense_Mutation p.A244T 0.28 deleterious(0.01) probably_damaging(1) TCGA-2J-AAB6-01 19 15131402 15131402 C T CCDC105 Nonsense_Mutation p.R269* 0.25 TCGA-2J-AAB6-01 19 22940908 22940908 A G ZNF99 Silent p.A601A 0.29 TCGA-2J-AAB6-01 19 2834140 2834140 C T ZNF554 Nonsense_Mutation p.Q303* 0.29 TCGA-2J-AAB6-01 19 45809925 45809925 C T CKM 3'UTR 0.16 TCGA-2J-AAB6-01 19 46307741 46307741 C T RSPH6A Silent p.P474P 0.13 TCGA-2J-AAB6-01 19 49362745 49362745 G A PLEKHA4 Missense_Mutation p.R225W 0.54 deleterious(0.01) benign(0.022) TCGA-2J-AAB6-01 19 52023419 52023419 C T SIGLEC6 Missense_Mutation p.A427T 0.46 deleterious(0) benign(0.089) TCGA-2J-AAB6-01 19 52249584 52249584 C T FPR1 Missense_Mutation p.G222R 0.47 deleterious(0) probably_damaging(0.998) TCGA-2J-AAB6-01 1 152648628 152648628 C A LCE2C Missense_Mutation p.S46Y 0.18 deleterious_low_confidence(0) unknown(0) TCGA-2J-AAB6-01 1 16945566 16945566 C T RP5-1182A14.5 3'Flank 0.15 TCGA-2J-AAB6-01 1 175365844 175365844 T A TNR Missense_Mutation p.Y359F 0.19 tolerated(0.14) probably_damaging(0.999) TCGA-2J-AAB6-01 1 179530445 179530445 G T NPHS2 Missense_Mutation p.P144T 0.40 tolerated(0.06) possibly_damaging(0.608) TCGA-2J-AAB6-01 1 197112823 197112823 T G ASPM Silent p.R187R 0.39 TCGA-2J-AAB6-01 1 247978702 247978702 C A OR14A16 Silent p.L110L 0.19 TCGA-2J-AAB6-01 1 248112943 248112943 A C OR2L8 Silent p.R262R 0.21 TCGA-2J-AAB6-01 1 248202362 248202362 C T OR2L2 Nonsense_Mutation p.R265* 0.21 TCGA-2J-AAB6-01 1 4772146 4772146 G A AJAP1 Silent p.A72A 0.29 TCGA-2J-AAB6-01 20 35177521 35177521 A G MYL9 Missense_Mutation p.M130V 0.37 tolerated(0.12) possibly_damaging(0.709) TCGA-2J-AAB6-01 21 10951332 10951332 C T TPTE Missense_Mutation p.R127H 0.09 tolerated(0.28) benign(0.072) TCGA-2J-AAB6-01 21 46306690 46306690 C T ITGB2 Silent p.R736R 0.27 TCGA-2J-AAB6-01 22 25294015 25294015 A G SGSM1 Missense_Mutation p.N755S 0.53 tolerated(0.27) benign(0.024) TCGA-2J-AAB6-01 22 28194939 28194939 C T MN1 Silent p.Q531Q 0.33 TCGA-2J-AAB6-01 22 28194945 28194945 C T MN1 Silent p.Q529Q 0.44 TCGA-2J-AAB6-01 22 31837984 31837984 C T EIF4ENIF1 Missense_Mutation p.R776H 0.52 deleterious(0.03) benign(0.01) TCGA-2J-AAB6-01 22 43996133 43996133 C T EFCAB6 Missense_Mutation p.E898K 0.26 tolerated(0.14) benign(0.086) TCGA-2J-AAB6-01 22 50941833 50941833 C T LMF2 Missense_Mutation p.R704Q 0.25 tolerated(0.14) benign(0.059) TCGA-2J-AAB6-01 2 131797606 131797606 C T ARHGEF4 Silent p.D255D 0.17 TCGA-2J-AAB6-01 2 132021474 132021474 C T POTEE Missense_Mutation p.R816C 0.21 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-2J-AAB6-01 2 179455980 179455980 C T TTN Missense_Mutation p.G20158S 0.25 TCGA-2J-AAB6-01 2 180014068 180014068 C G SESTD1 Missense_Mutation p.L179F 0.17 tolerated(0.08) benign(0.075) TCGA-2J-AAB6-01 2 1893097 1893097 G A MYT1L Silent p.G810G 0.27 TCGA-2J-AAB6-01 2 220409474 220409474 C T TMEM198 Missense_Mutation p.R9W 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.689) TCGA-2J-AAB6-01 2 231120208 231120208 C T SP140 Missense_Mutation p.R401C 0.22 tolerated(0.05) benign(0.255) TCGA-2J-AAB6-01 2 241713624 241713624 T C KIF1A Missense_Mutation p.Y338C 0.27 deleterious(0) probably_damaging(0.999) TCGA-2J-AAB6-01 2 42671164 42671164 A T KCNG3 Missense_Mutation p.F407L 0.31 tolerated(0.55) probably_damaging(0.996) TCGA-2J-AAB6-01 2 49190190 49190190 G T FSHR Missense_Mutation p.F590L 0.23 deleterious(0.01) possibly_damaging(0.59) TCGA-2J-AAB6-01 2 85779621 85779621 G A GGCX Missense_Mutation p.R453C 0.30 deleterious(0.03) possibly_damaging(0.67) TCGA-2J-AAB6-01 3 13360637 13360637 G A NUP210 Missense_Mutation p.T1833M 0.19 deleterious(0.01) possibly_damaging(0.563) TCGA-2J-AAB6-01 3 38662392 38662392 C T SCN5A Missense_Mutation p.A185T 0.22 tolerated(0.17) possibly_damaging(0.671) TCGA-2J-AAB6-01 3 48219349 48219349 G T CDC25A Missense_Mutation p.L227M 0.43 tolerated(0.21) benign(0.384) TCGA-2J-AAB6-01 3 58385103 58385103 C G PXK Missense_Mutation p.P394A 0.20 deleterious(0.01) possibly_damaging(0.513) TCGA-2J-AAB6-01 4 87622708 87622708 G A PTPN13 Missense_Mutation p.E317K 0.30 tolerated(0.26) benign(0.381) TCGA-2J-AAB6-01 5 148424197 148424197 A T SH3TC2 Missense_Mutation p.L95H 0.52 deleterious(0) probably_damaging(1) TCGA-2J-AAB6-01 6 160501166 160501166 G A IGF2R Missense_Mutation p.D1898N 0.27 tolerated(0.13) benign(0.229) TCGA-2J-AAB6-01 7 6006583 6006583 C T RSPH10B Silent p.V55V 0.18 TCGA-2J-AAB6-01 7 83764207 83764207 T C SEMA3A Missense_Mutation p.H58R 0.43 tolerated(0.82) benign(0.399) TCGA-2J-AAB6-01 7 99654807 99654807 C T ZSCAN21 Nonsense_Mutation p.R60* 0.25 TCGA-2J-AAB6-01 9 123785771 123785772 - T C5 Frame_Shift_Ins p.P343Tfs*34 0.42 TCGA-2J-AAB6-01 9 135114577 135114577 C T NTNG2 Nonsense_Mutation p.R381* 0.33 TCGA-2J-AAB6-01 X 36090000 36090000 T C CHDC2 Silent p.A34A 0.51 TCGA-2J-AAB6-01 X 49063557 49063557 G C CACNA1F Missense_Mutation p.L1725V 0.76 tolerated(0.44) benign(0.001) TCGA-2J-AAB6-01 X 591576 591576 C T SHOX 5'UTR 0.44 TCGA-2J-AAB8-01 10 124908058 124908064 AGCCGGA - HMX2 Frame_Shift_Del p.E55Afs*114 0.19 TCGA-2J-AAB8-01 10 50946068 50946068 G A OGDHL Silent p.I814I 0.05 TCGA-2J-AAB8-01 11 30033513 30033513 C T KCNA4 Missense_Mutation p.G238E 0.07 deleterious(0) probably_damaging(1) TCGA-2J-AAB8-01 12 13240148 13240148 C T GSG1 Silent p.A205A 0.16 TCGA-2J-AAB8-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.09 deleterious(0.03) benign(0.376) TCGA-2J-AAB8-01 12 54675182 54675182 C T HNRNPA1 Missense_Mutation p.P10S 0.13 tolerated(0.08) possibly_damaging(0.814) TCGA-2J-AAB8-01 12 56086734 56086734 C T ITGA7 Missense_Mutation p.R917Q 0.08 tolerated(0.06) benign(0.095) TCGA-2J-AAB8-01 13 21562295 21562295 G T LATS2 Missense_Mutation p.Q542K 0.12 tolerated(0.14) probably_damaging(0.966) TCGA-2J-AAB8-01 13 21562296 21562296 C T LATS2 Silent p.E541E 0.12 TCGA-2J-AAB8-01 14 32586406 32586406 T - ARHGAP5 Frame_Shift_Del p.F1260Lfs*61 0.23 TCGA-2J-AAB8-01 14 73137768 73137769 - T DPF3 3'UTR 0.19 TCGA-2J-AAB8-01 15 30020212 30020212 G A TJP1 Nonsense_Mutation p.R677* 0.10 TCGA-2J-AAB8-01 15 42836106 42836106 C T LRRC57 3'UTR 0.16 TCGA-2J-AAB8-01 15 50223420 50223420 C T ATP8B4 Missense_Mutation p.R513Q 0.12 deleterious(0.01) possibly_damaging(0.908) TCGA-2J-AAB8-01 15 73616169 73616169 G T HCN4 Nonsense_Mutation p.C755* 0.16 TCGA-2J-AAB8-01 16 20355441 20355441 G A UMOD Silent p.I412I 0.07 TCGA-2J-AAB8-01 16 30723277 30723277 C G SRCAP Missense_Mutation p.S538R 0.10 unknown(0) TCGA-2J-AAB8-01 17 44060812 44060812 C T MAPT Silent p.S214S 0.08 TCGA-2J-AAB8-01 17 47482526 47482526 C T PHB Missense_Mutation p.G216D 0.11 deleterious(0) possibly_damaging(0.873) TCGA-2J-AAB8-01 17 7099798 7099798 G C DLG4 Missense_Mutation p.P437A 0.16 deleterious(0) probably_damaging(0.992) TCGA-2J-AAB8-01 17 74014618 74014618 C T EVPL Missense_Mutation p.V450M 0.16 deleterious(0) possibly_damaging(0.874) TCGA-2J-AAB8-01 17 7578433 7578433 G T TP53 Nonsense_Mutation p.S166* 0.21 TCGA-2J-AAB8-01 18 22040673 22040675 CTT - HRH4 5'UTR 0.09 TCGA-2J-AAB8-01 18 48584787 48584787 C T SMAD4 Nonsense_Mutation p.Q289* 0.05 TCGA-2J-AAB8-01 19 11492697 11492697 G A EPOR Silent p.A112A 0.13 TCGA-2J-AAB8-01 19 16910925 16910925 C T NWD1 Missense_Mutation p.P1230S 0.16 deleterious(0.03) probably_damaging(0.982) TCGA-2J-AAB8-01 1 145578668 145578668 G A PIAS3 Silent p.A158A 0.06 TCGA-2J-AAB8-01 1 151554206 151554206 C T TUFT1 3'UTR 0.05 TCGA-2J-AAB8-01 1 169529961 169529961 G A F5 Silent p.D139D 0.03 TCGA-2J-AAB8-01 1 169677858 169677858 G A SELL Nonsense_Mutation p.R71* 0.07 TCGA-2J-AAB8-01 1 175331865 175331865 C T TNR Missense_Mutation p.E930K 0.24 tolerated(0.12) benign(0.376) TCGA-2J-AAB8-01 1 203045589 203045589 G A PPFIA4 3'UTR 0.14 TCGA-2J-AAB8-01 1 233511709 233511709 C T MLK4 Nonsense_Mutation p.R575* 0.11 TCGA-2J-AAB8-01 1 248402643 248402643 C T OR2M4 Missense_Mutation p.P138L 0.18 tolerated(0.66) benign(0.002) TCGA-2J-AAB8-01 1 67724439 67724439 C G IL23R Silent p.S506S 0.05 TCGA-2J-AAB8-01 22 21288172 21288172 C A CRKL Silent p.A139A 0.06 TCGA-2J-AAB8-01 22 45580351 45580351 G A NUP50 Missense_Mutation p.V408I 0.08 tolerated(0.86) benign(0.015) TCGA-2J-AAB8-01 2 170428438 170428438 G C FASTKD1 Missense_Mutation p.I34M 0.08 tolerated(0.24) benign(0.151) TCGA-2J-AAB8-01 2 189850473 189850473 G A COL3A1 Missense_Mutation p.G139E 0.06 unknown(0) TCGA-2J-AAB8-01 2 213914507 213914507 G C IKZF2 Missense_Mutation p.F168L 0.04 deleterious(0.05) probably_damaging(0.994) TCGA-2J-AAB8-01 2 25051001 25051001 G A ADCY3 Silent p.P734P 0.06 TCGA-2J-AAB8-01 2 29443582 29443582 C T ALK Missense_Mutation p.R1212H 0.19 deleterious(0) possibly_damaging(0.873) TCGA-2J-AAB8-01 2 55252908 55252908 A C RTN4 Missense_Mutation p.F776C 0.11 tolerated(0.18) benign(0.428) TCGA-2J-AAB8-01 3 10443850 10443850 C T ATP2B2 Missense_Mutation p.V194M 0.06 deleterious(0) probably_damaging(0.999) TCGA-2J-AAB8-01 3 183368090 183368090 A T KLHL24 5'UTR 0.11 TCGA-2J-AAB8-01 3 49936064 49936064 A G MST1R Missense_Mutation p.C536R 0.16 deleterious(0) probably_damaging(0.999) TCGA-2J-AAB8-01 4 184931519 184931519 G A STOX2 Missense_Mutation p.E510K 0.17 deleterious(0.01) benign(0.11) TCGA-2J-AAB8-01 4 184932370 184932370 G A STOX2 Silent p.E793E 0.09 TCGA-2J-AAB8-01 4 88412840 88412840 G A SPARCL1 Silent p.A407A 0.12 TCGA-2J-AAB8-01 5 126771182 126771182 G A MEGF10 Splice_Site p.X702_splice 0.10 TCGA-2J-AAB8-01 5 167182058 167182058 G A TENM2 Intron 0.07 TCGA-2J-AAB8-01 5 79366517 79366517 G A THBS4 Missense_Mutation p.G502S 0.06 deleterious(0.03) benign(0.106) TCGA-2J-AAB8-01 5 82940318 82940318 G A HAPLN1 Silent p.G213G 0.07 TCGA-2J-AAB8-01 6 2116094 2116094 C T GMDS Missense_Mutation p.D86N 0.07 deleterious_low_confidence(0) probably_damaging(1) TCGA-2J-AAB8-01 7 100692136 100692136 G A MUC17 Silent p.E4182E 0.07 TCGA-2J-AAB8-01 7 150772809 150772810 - A SLC4A2 Frame_Shift_Ins p.H1140Qfs*80 0.10 TCGA-2J-AAB8-01 7 4259748 4259748 C G SDK1 Missense_Mutation p.S1849R 0.04 deleterious(0) benign(0.1) TCGA-2J-AAB8-01 8 106431448 106431448 C G ZFPM2 Missense_Mutation p.D39E 0.12 tolerated(0.39) benign(0.065) TCGA-2J-AAB8-01 8 113326150 113326150 G A CSMD3 Missense_Mutation p.R2561W 0.14 deleterious(0) probably_damaging(0.97) TCGA-2J-AAB8-01 8 144645015 144645015 A T GSDMD Missense_Mutation p.M466L 0.10 tolerated(0.25) benign(0) TCGA-2J-AAB8-01 8 38107250 38107250 C G DDHD2 Missense_Mutation p.Q425E 0.09 deleterious(0.01) benign(0.02) TCGA-2J-AAB8-01 8 77763870 77763870 A T ZFHX4 Missense_Mutation p.K1571N 0.07 possibly_damaging(0.607) TCGA-2J-AAB8-01 9 139360714 139360714 A G SEC16A Splice_Site p.X1376_splice 0.11 TCGA-2J-AAB8-01 9 94794825 94794825 G A SPTLC1 Silent p.V448V 0.10 TCGA-2J-AAB8-01 X 22117217 22117217 G A PHEX Missense_Mutation p.V343I 0.12 tolerated(0.21) possibly_damaging(0.669) TCGA-2J-AAB9-01 10 97818055 97818055 A C CCNJ 3'UTR 0.08 TCGA-2J-AAB9-01 16 76486445 76486445 C T CNTNAP4 Missense_Mutation p.P298L 0.05 deleterious(0.01) probably_damaging(0.923) TCGA-2J-AAB9-01 17 29645681 29645681 A G EVI2A Silent p.H140H 0.06 TCGA-2J-AAB9-01 17 7579377 7579377 G A TP53 Nonsense_Mutation p.Q104* 0.07 TCGA-2J-AAB9-01 18 29848632 29848632 C T GAREM Silent p.P611P 0.07 TCGA-2J-AAB9-01 19 5693658 5693658 G A LONP1 Missense_Mutation p.R815C 0.06 deleterious(0.01) possibly_damaging(0.838) TCGA-2J-AAB9-01 19 8808452 8808452 G A ACTL9 Silent p.H200H 0.07 TCGA-2J-AAB9-01 1 154306722 154306722 C T ATP8B2 Silent p.F276F 0.05 TCGA-2J-AAB9-01 1 221875700 221875700 C A DUSP10 3'UTR 0.07 TCGA-2J-AAB9-01 20 47704596 47704596 C T CSE1L Missense_Mutation p.P592S 0.06 tolerated(0.75) benign(0.101) TCGA-2J-AAB9-01 22 45312324 45312324 C T PHF21B Missense_Mutation p.A134T 0.07 tolerated(0.43) benign(0.009) TCGA-2J-AAB9-01 2 120776837 120776837 G A EPB41L5 Silent p.L59L 0.07 TCGA-2J-AAB9-01 2 223489170 223489170 G A FARSB Silent p.L331L 0.06 TCGA-2J-AAB9-01 3 123345771 123345771 G A MYLK Missense_Mutation p.T1711M 0.10 deleterious(0) benign(0.109) TCGA-2J-AAB9-01 3 14552768 14552768 C T GRIP2 RNA 0.09 TCGA-2J-AAB9-01 3 151107890 151107890 G A MED12L Missense_Mutation p.G1824S 0.04 tolerated(0.15) benign(0.017) TCGA-2J-AAB9-01 3 183904017 183904017 C T ABCF3 Silent p.L8L 0.05 TCGA-2J-AAB9-01 4 15444115 15444115 G A C1QTNF7 Missense_Mutation p.A195T 0.05 tolerated(0.18) possibly_damaging(0.476) TCGA-2J-AAB9-01 5 110459563 110459563 A G WDR36 Missense_Mutation p.T793A 0.05 deleterious(0) probably_damaging(0.983) TCGA-2J-AAB9-01 5 140183013 140183013 C T PCDHA3 Missense_Mutation p.A744V 0.04 deleterious_low_confidence(0.02) possibly_damaging(0.466) TCGA-2J-AAB9-01 5 40854341 40854341 C T CARD6 Silent p.S969S 0.04 TCGA-2J-AAB9-01 7 100466383 100466383 G T TRIP6 Silent p.G210G 0.07 TCGA-2J-AAB9-01 7 87190672 87190672 A G ABCB1 Missense_Mutation p.L245S 0.05 tolerated(0.69) benign(0.004) TCGA-2J-AAB9-01 8 100729436 100729436 C T VPS13B Silent p.N2189N 0.07 TCGA-2J-AAB9-01 X 31525402 31525402 T A DMD Missense_Mutation p.I2796F 0.06 benign(0.402) TCGA-2J-AAB9-01 X 44928823 44928823 G T KDM6A Splice_Site p.X642_splice 0.05 TCGA-2J-AABA-01 10 21158753 21158753 G A NEBL Silent p.D166D 0.19 TCGA-2J-AABA-01 11 1092201 1092201 G A MUC2 Silent p.S1340S 0.16 TCGA-2J-AABA-01 11 44089316 44089316 C G ACCS Missense_Mutation p.L47V 0.15 tolerated(0.09) benign(0.055) TCGA-2J-AABA-01 12 79990331 79990331 G A PAWR Missense_Mutation p.S264L 0.15 tolerated(0.14) possibly_damaging(0.6) TCGA-2J-AABA-01 17 13399907 13399907 C T HS3ST3A1 Silent p.A276A 0.09 TCGA-2J-AABA-01 17 29559101 29559101 C T NF1 Nonsense_Mutation p.Q1070* 0.19 TCGA-2J-AABA-01 18 48604705 48604705 G A SMAD4 Nonsense_Mutation p.W509* 0.18 TCGA-2J-AABA-01 19 45017226 45017231 GTTACC - CEACAM20 Splice_Site 0.20 TCGA-2J-AABA-01 19 53304471 53304471 G C ZNF28 Missense_Mutation p.H209Q 0.12 deleterious(0.04) probably_damaging(0.993) TCGA-2J-AABA-01 19 53960290 53960290 C T ZNF761 RNA 0.10 TCGA-2J-AABA-01 1 110035305 110035305 A G ATXN7L2 3'UTR 0.19 TCGA-2J-AABA-01 1 200950209 200950209 C T KIF21B Silent p.P1286P 0.14 TCGA-2J-AABA-01 1 27101342 27101342 G T ARID1A Nonsense_Mutation p.E1542* 0.18 TCGA-2J-AABA-01 20 56227291 56227309 GCCCCTCCATGCGCCCGCC - PMEPA1 Frame_Shift_Del p.G222Rfs*42 0.13 TCGA-2J-AABA-01 2 120194962 120194962 C - TMEM37 Frame_Shift_Del p.L174* 0.22 TCGA-2J-AABA-01 2 133541374 133541374 T C NCKAP5 Missense_Mutation p.I1004V 0.15 tolerated(0.82) benign(0.001) TCGA-2J-AABA-01 2 179431867 179431867 C T TTN Missense_Mutation p.R26331Q 0.19 TCGA-2J-AABA-01 2 197636516 197636516 T - GTF3C3 Frame_Shift_Del p.N739Mfs*35 0.20 TCGA-2J-AABA-01 2 21225066 21225069 GACT - APOB Frame_Shift_Del p.S4409* 0.20 TCGA-2J-AABA-01 2 25459873 25459873 G A DNMT3A Missense_Mutation p.P804S 0.16 deleterious(0.03) probably_damaging(0.993) TCGA-2J-AABA-01 2 74688883 74688883 C T MOGS Missense_Mutation p.R678Q 0.14 tolerated(0.13) benign(0.015) TCGA-2J-AABA-01 2 8891668 8891668 C A KIDINS220 Missense_Mutation p.V1040L 0.14 tolerated(0.54) benign(0.04) TCGA-2J-AABA-01 2 97019996 97019996 G T NCAPH Missense_Mutation p.D360Y 0.13 deleterious(0.01) benign(0.114) TCGA-2J-AABA-01 3 120500382 120500382 G C GTF2E1 3'UTR 0.18 TCGA-2J-AABA-01 3 51897313 51897313 G A IQCF2 Missense_Mutation p.C141Y 0.12 tolerated(0.43) probably_damaging(0.999) TCGA-2J-AABA-01 4 122258001 122258001 G A QRFPR Silent p.V174V 0.17 TCGA-2J-AABA-01 4 153244139 153244139 C T FBXW7 Nonsense_Mutation p.W673* 0.12 TCGA-2J-AABA-01 4 6107417 6107417 G A JAKMIP1 Missense_Mutation p.A136V 0.18 tolerated(0.07) benign(0.093) TCGA-2J-AABA-01 4 88583927 88583927 G A DMP1 Missense_Mutation p.V333I 0.12 tolerated(0.23) benign(0.04) TCGA-2J-AABA-01 5 179247944 179247944 C T SQSTM1 Missense_Mutation p.S3L 0.07 deleterious(0.01) benign(0.246) TCGA-2J-AABA-01 5 79029066 79029066 A G CMYA5 Missense_Mutation p.D1493G 0.13 benign(0.026) TCGA-2J-AABA-01 6 168299092 168299092 G - MLLT4 Frame_Shift_Del p.A509Qfs*9 0.14 TCGA-2J-AABA-01 6 93967819 93967819 C T EPHA7 Missense_Mutation p.R703K 0.20 tolerated(1) benign(0.025) TCGA-2J-AABA-01 7 129096387 129096387 G A STRIP2 Missense_Mutation p.M314I 0.18 deleterious(0.04) probably_damaging(0.999) TCGA-2J-AABA-01 7 1522220 1522220 C T INTS1 Missense_Mutation p.R1222H 0.21 deleterious(0) possibly_damaging(0.832) TCGA-2J-AABA-01 7 27169037 27169037 C T HOXA4 Missense_Mutation p.R257H 0.16 deleterious(0) probably_damaging(0.999) TCGA-2J-AABA-01 7 43810766 43810766 A T BLVRA Silent p.A3A 0.18 TCGA-2J-AABA-01 7 5569258 5569260 CGA - ACTB In_Frame_Del p.V10del 0.21 TCGA-2J-AABA-01 8 105263381 105263381 A C RIMS2 Missense_Mutation p.K1274T 0.16 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-2J-AABA-01 8 30924630 30924630 C T WRN Missense_Mutation p.R196C 0.15 deleterious(0) probably_damaging(0.998) TCGA-2J-AABA-01 8 75944513 75944513 C T CRISPLD1 3'UTR 0.05 TCGA-2J-AABE-01 10 45954652 45954652 C T MARCH8 Missense_Mutation p.V163I 0.26 tolerated(0.54) benign(0.007) TCGA-2J-AABE-01 11 13378443 13378443 C T ARNTL Intron 0.30 TCGA-2J-AABE-01 12 111121035 111121035 C T HVCN1 Missense_Mutation p.E6K 0.18 tolerated_low_confidence(0.11) benign(0.015) TCGA-2J-AABE-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.14 deleterious(0.03) benign(0.376) TCGA-2J-AABE-01 12 5154148 5154148 C A KCNA5 Missense_Mutation p.R279S 0.15 tolerated(0.11) benign(0.096) TCGA-2J-AABE-01 13 36900684 36900684 G C SPG20 Intron 0.17 TCGA-2J-AABE-01 14 35072604 35072604 T C SNX6 Missense_Mutation p.I168V 0.16 tolerated(1) benign(0.001) TCGA-2J-AABE-01 15 102304486 102304486 C A DNM1P47 RNA 0.12 TCGA-2J-AABE-01 16 16248786 16248786 G C ABCC6 Missense_Mutation p.P1329A 0.11 deleterious(0.03) benign(0.044) TCGA-2J-AABE-01 17 16699432 16699432 C T CCDC144A 3'UTR 0.12 TCGA-2J-AABE-01 17 56492875 56492875 G A RNF43 Nonsense_Mutation p.Q22* 0.22 TCGA-2J-AABE-01 18 48591861 48591861 C - SMAD4 Frame_Shift_Del p.P342Lfs*42 0.24 TCGA-2J-AABE-01 19 11833554 11833554 T C ZNF823 Silent p.R265R 0.14 TCGA-2J-AABE-01 19 37677113 37677113 G T ZNF585B Missense_Mutation p.H442Q 0.16 tolerated(0.46) benign(0.364) TCGA-2J-AABE-01 19 39805357 39805357 A T LRFN1 Missense_Mutation p.V207E 0.25 deleterious(0.01) possibly_damaging(0.602) TCGA-2J-AABE-01 19 40901352 40901352 A G PRX Silent p.A969A 0.05 TCGA-2J-AABE-01 19 50154632 50154632 C T SCAF1 Missense_Mutation p.P329L 0.24 unknown(0) TCGA-2J-AABE-01 19 56901800 56901800 T G ZNF582 Missense_Mutation p.Q27P 0.16 deleterious(0) probably_damaging(0.995) TCGA-2J-AABE-01 1 145281517 145281517 T C NOTCH2NL Silent p.I149I 0.07 TCGA-2J-AABE-01 1 158151261 158151261 C T CD1D Silent p.F26F 0.16 TCGA-2J-AABE-01 1 24121164 24121164 C G LYPLA2 Intron 0.13 TCGA-2J-AABE-01 1 243778456 243778456 A G AKT3 Missense_Mutation p.V190A 0.04 tolerated(0.09) possibly_damaging(0.449) TCGA-2J-AABE-01 1 28661125 28661125 C T MED18 Missense_Mutation p.P91S 0.19 tolerated(0.08) benign(0.012) TCGA-2J-AABE-01 20 47896888 47896888 C T ZNFX1 5'Flank 0.10 TCGA-2J-AABE-01 21 38269242 38269242 G A HLCS Missense_Mutation p.R457C 0.18 tolerated(0.09) possibly_damaging(0.88) TCGA-2J-AABE-01 2 131096687 131096687 C T CCDC115 3'UTR 0.14 TCGA-2J-AABE-01 2 136567449 136567449 C T LCT Missense_Mutation p.S823N 0.04 tolerated(0.6) benign(0.001) TCGA-2J-AABE-01 2 230902087 230902087 T C SLC16A14 3'UTR 0.27 TCGA-2J-AABE-01 2 97527143 97527143 C T SEMA4C Silent p.V574V 0.13 TCGA-2J-AABE-01 3 142396872 142396872 A T PLS1 Splice_Site p.X166_splice 0.16 TCGA-2J-AABE-01 3 50645400 50645400 G C CISH Missense_Mutation p.R156G 0.16 tolerated(0.1) probably_damaging(0.937) TCGA-2J-AABE-01 3 52388864 52388864 G A DNAH1 Silent p.L1162L 0.17 TCGA-2J-AABE-01 3 52728222 52728222 A G GNL3 Silent p.T527T 0.15 TCGA-2J-AABE-01 3 52778267 52778267 T C NEK4 Missense_Mutation p.M628V 0.19 tolerated(0.2) benign(0.001) TCGA-2J-AABE-01 4 26756566 26756566 C G TBC1D19 Silent p.T526T 0.15 TCGA-2J-AABE-01 4 57182165 57182165 C T KIAA1211 Missense_Mutation p.P833S 0.18 tolerated(0.41) possibly_damaging(0.803) TCGA-2J-AABE-01 4 57676313 57676313 G A SPINK2 Missense_Mutation p.P83S 0.18 tolerated(0.09) possibly_damaging(0.74) TCGA-2J-AABE-01 5 140554541 140554541 G T PCDHB7 Missense_Mutation p.V709L 0.13 tolerated_low_confidence(0.15) benign(0.021) TCGA-2J-AABE-01 5 140554552 140554552 C G PCDHB7 Missense_Mutation p.C712W 0.14 tolerated_low_confidence(0.15) benign(0.199) TCGA-2J-AABE-01 5 177651565 177651565 C G PHYKPL Missense_Mutation p.A168P 0.18 deleterious(0) probably_damaging(0.995) TCGA-2J-AABE-01 6 144780435 144780435 C T UTRN Silent p.G884G 0.05 TCGA-2J-AABE-01 6 27835072 27835074 TTC - HIST1H1B In_Frame_Del p.K78del 0.26 TCGA-2J-AABE-01 6 51921495 51921495 C T PKHD1 Splice_Site p.X565_splice 0.16 TCGA-2J-AABE-01 6 79655783 79655783 G A PHIP Missense_Mutation p.S1522F 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.641) TCGA-2J-AABE-01 6 88299660 88299660 G A RARS2 Missense_Mutation p.R6C 0.19 deleterious(0) possibly_damaging(0.79) TCGA-2J-AABE-01 7 95442629 95442629 C T DYNC1I1 Silent p.G115G 0.19 TCGA-2J-AABE-01 7 99219001 99219001 A T ZSCAN25 Silent p.P131P 0.09 TCGA-2J-AABE-01 8 105160951 105160951 C T RIMS2 Intron 0.16 TCGA-2J-AABE-01 9 137004932 137004932 C T WDR5 Intron 0.14 TCGA-2J-AABF-01 10 118895992 118895992 G A VAX1 Silent p.S140S 0.11 TCGA-2J-AABF-01 11 19256510 19256510 G A E2F8 Nonsense_Mutation p.R183* 0.16 TCGA-2J-AABF-01 11 34184254 34184254 G A ABTB2 Missense_Mutation p.A696V 0.09 tolerated(0.31) benign(0.002) TCGA-2J-AABF-01 11 75298708 75298708 G A MAP6 Missense_Mutation p.P613L 0.09 tolerated_low_confidence(0.14) possibly_damaging(0.908) TCGA-2J-AABF-01 12 19436284 19436284 G A PLEKHA5 Missense_Mutation p.E462K 0.10 deleterious(0) probably_damaging(0.995) TCGA-2J-AABF-01 12 20774340 20774340 G A PDE3A Missense_Mutation p.R512Q 0.07 deleterious(0.02) benign(0.379) TCGA-2J-AABF-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.10 deleterious(0) benign(0.361) TCGA-2J-AABF-01 12 53607867 53607867 G A RARG Silent p.L263L 0.07 TCGA-2J-AABF-01 12 54348951 54348951 G A HOXC12 Missense_Mutation p.G80S 0.11 tolerated(0.5) benign(0.007) TCGA-2J-AABF-01 12 6970246 6970246 C T USP5 Missense_Mutation p.P492S 0.06 deleterious(0.03) probably_damaging(0.973) TCGA-2J-AABF-01 12 88512344 88512344 C T CEP290 Missense_Mutation p.E543K 0.18 possibly_damaging(0.904) TCGA-2J-AABF-01 15 102252128 102252128 G A TARSL2 Missense_Mutation p.P256L 0.06 deleterious(0) probably_damaging(0.929) TCGA-2J-AABF-01 15 78305282 78305282 A T TBC1D2B Missense_Mutation p.L718Q 0.09 deleterious(0) probably_damaging(1) TCGA-2J-AABF-01 15 80465429 80465429 T A FAH Silent p.S260S 0.19 TCGA-2J-AABF-01 16 11945423 11945423 T C RSL1D1 5'UTR 0.10 TCGA-2J-AABF-01 16 28854169 28854169 G T TUFM 3'UTR 0.19 TCGA-2J-AABF-01 16 31393261 31393261 C T ITGAX 3'UTR 0.10 TCGA-2J-AABF-01 16 3533506 3533506 C T NAA60 Missense_Mutation p.L161F 0.07 deleterious(0.01) probably_damaging(0.987) TCGA-2J-AABF-01 16 7703894 7703894 G A RBFOX1 Missense_Mutation p.V299M 0.09 deleterious(0.01) possibly_damaging(0.598) TCGA-2J-AABF-01 17 16831075 16831075 A C TBC1D27 RNA 0.07 TCGA-2J-AABF-01 17 61902464 61902464 C T FTSJ3 Missense_Mutation p.E219K 0.07 deleterious(0) probably_damaging(0.954) TCGA-2J-AABF-01 17 62009629 62009629 G A CD79B 5'UTR 0.10 TCGA-2J-AABF-01 17 7010342 7010342 C T ASGR2 Missense_Mutation p.V214I 0.08 deleterious(0.04) possibly_damaging(0.583) TCGA-2J-AABF-01 17 7577555 7577555 G T TP53 Nonsense_Mutation p.C242* 0.18 TCGA-2J-AABF-01 19 33696978 33696978 C T LRP3 Silent p.A434A 0.09 TCGA-2J-AABF-01 19 51961269 51961269 G A SIGLEC8 Missense_Mutation p.R125W 0.05 deleterious(0.03) probably_damaging(0.996) TCGA-2J-AABF-01 19 53117004 53117004 G A ZNF83 Missense_Mutation p.H272Y 0.04 tolerated(0.35) possibly_damaging(0.589) TCGA-2J-AABF-01 19 57089047 57089047 G T ZNF470 Missense_Mutation p.R417I 0.04 deleterious(0) probably_damaging(0.988) TCGA-2J-AABF-01 19 7998774 7998774 C T TIMM44 Missense_Mutation p.E220K 0.12 tolerated(0.21) benign(0.023) TCGA-2J-AABF-01 1 10510135 10510135 A C CORT 5'UTR 0.08 TCGA-2J-AABF-01 1 158153826 158153826 G A CD1D Splice_Site p.X329_splice 0.08 TCGA-2J-AABF-01 1 160801121 160801121 A G CD244 3'UTR 0.04 TCGA-2J-AABF-01 1 19505631 19505631 C T UBR4 Silent p.V756V 0.14 TCGA-2J-AABF-01 1 22216568 22216568 C G HSPG2 Missense_Mutation p.Q160H 0.07 possibly_damaging(0.885) TCGA-2J-AABF-01 1 22216609 22216609 C A HSPG2 Nonsense_Mutation p.E147* 0.08 TCGA-2J-AABF-01 1 237550598 237550598 C T RYR2 Silent p.N198N 0.14 TCGA-2J-AABF-01 1 37346362 37346362 C A GRIK3 Silent p.P141P 0.12 TCGA-2J-AABF-01 20 34260692 34260692 C T NFS1 Missense_Mutation p.R432H 0.07 deleterious(0.04) benign(0.022) TCGA-2J-AABF-01 20 36868017 36868017 T C KIAA1755 Missense_Mutation p.T554A 0.05 tolerated(0.63) benign(0.002) TCGA-2J-AABF-01 20 3785242 3785242 G A CDC25B Missense_Mutation p.R506H 0.16 deleterious(0) probably_damaging(0.985) TCGA-2J-AABF-01 20 61341006 61341006 C T NTSR1 Silent p.D149D 0.06 TCGA-2J-AABF-01 20 61511164 61511164 G A DIDO1 Silent p.S2048S 0.07 TCGA-2J-AABF-01 22 29837713 29837713 G A RFPL1 Missense_Mutation p.V186M 0.08 tolerated(0.17) probably_damaging(0.93) TCGA-2J-AABF-01 2 1497609 1497609 C T TPO Missense_Mutation p.R602C 0.13 deleterious(0) probably_damaging(0.977) TCGA-2J-AABF-01 2 167168078 167168078 A G SCN9A Silent p.Y63Y 0.08 TCGA-2J-AABF-01 2 179587193 179587193 G A TTN Nonsense_Mutation p.R7441* 0.13 TCGA-2J-AABF-01 2 220312960 220312960 G A SPEG Silent p.S360S 0.09 TCGA-2J-AABF-01 2 80136879 80136879 G A CTNNA2 Missense_Mutation p.V338M 0.11 deleterious(0) possibly_damaging(0.906) TCGA-2J-AABF-01 3 113850098 113850098 C T DRD3 Silent p.A291A 0.07 TCGA-2J-AABF-01 3 125734346 125734346 C T SLC41A3 Missense_Mutation p.V321I 0.08 tolerated(0.27) benign(0.113) TCGA-2J-AABF-01 3 39431021 39431021 C T SLC25A38 Silent p.S35S 0.05 TCGA-2J-AABF-01 4 47427807 47427807 C T GABRB1 Silent p.S399S 0.11 TCGA-2J-AABF-01 4 5830236 5830236 G A CRMP1 Missense_Mutation p.R595C 0.06 deleterious(0.01) probably_damaging(0.974) TCGA-2J-AABF-01 5 112175046 112175046 C A APC Missense_Mutation p.S1252Y 0.07 benign(0.109) TCGA-2J-AABF-01 6 121560264 121560264 G A TBC1D32 Silent p.T772T 0.15 TCGA-2J-AABF-01 6 123869741 123869741 C A TRDN Missense_Mutation p.K83N 0.08 deleterious_low_confidence(0) unknown(0) TCGA-2J-AABF-01 7 122377080 122377080 C A CADPS2 Missense_Mutation p.A128S 0.06 tolerated(0.57) benign(0.034) TCGA-2J-AABF-01 7 73010006 73010006 G A MLXIPL Silent p.Y757Y 0.07 TCGA-2J-AABF-01 7 794231 794231 C T HEATR2 Missense_Mutation p.R344C 0.08 deleterious(0) probably_damaging(0.995) TCGA-2J-AABF-01 7 94293374 94293374 G A PEG10 Missense_Mutation p.R169H 0.17 tolerated(0.11) probably_damaging(0.912) TCGA-2J-AABF-01 8 102649148 102649149 - CTCT GRHL2 Frame_Shift_Ins p.R504Lfs*10 0.15 TCGA-2J-AABF-01 8 27320780 27320780 G A CHRNA2 Missense_Mutation p.R394C 0.06 deleterious(0.04) benign(0.345) TCGA-2J-AABF-01 8 73480145 73480145 C T KCNB2 Missense_Mutation p.T59M 0.05 deleterious(0) probably_damaging(0.998) TCGA-2J-AABF-01 8 88249204 88249204 A G CNBD1 Missense_Mutation p.N212S 0.08 tolerated(0.26) benign(0.003) TCGA-2J-AABF-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.22 TCGA-2J-AABF-01 X 47835701 47835701 C G ZNF182 Missense_Mutation p.E595D 0.13 deleterious(0.02) probably_damaging(0.972) TCGA-2J-AABF-01 X 79938009 79938009 C T BRWD3 Missense_Mutation p.R1451H 0.03 deleterious(0) probably_damaging(0.996) TCGA-2J-AABH-01 10 61844558 61844558 T C ANK3 Silent p.L1292L 0.24 TCGA-2J-AABH-01 10 70516196 70516196 G A CCAR1 Missense_Mutation p.V598I 0.24 tolerated(0.26) possibly_damaging(0.482) TCGA-2J-AABH-01 11 62389371 62389371 T A B3GAT3 Missense_Mutation p.I17F 0.23 deleterious(0.03) benign(0.024) TCGA-2J-AABH-01 11 62533969 62533969 T C POLR2G Missense_Mutation p.L170P 0.25 tolerated(0.11) benign(0.005) TCGA-2J-AABH-01 11 86518765 86518765 C T PRSS23 Missense_Mutation p.P27L 0.22 tolerated(0.24) benign(0.001) TCGA-2J-AABH-01 12 112530884 112530884 T C NAA25 Missense_Mutation p.K39E 0.03 deleterious(0) probably_damaging(0.983) TCGA-2J-AABH-01 12 117703242 117703242 C T NOS1 Missense_Mutation p.R672H 0.26 deleterious(0.02) benign(0.01) TCGA-2J-AABH-01 12 123682836 123682836 C T MPHOSPH9 Silent p.V509V 0.22 TCGA-2J-AABH-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.20 deleterious(0) possibly_damaging(0.479) TCGA-2J-AABH-01 12 25398285 25398285 C T KRAS Missense_Mutation p.G12S 0.19 deleterious(0.03) possibly_damaging(0.644) TCGA-2J-AABH-01 12 7177305 7177305 G T C1S Missense_Mutation p.A473S 0.20 deleterious(0) probably_damaging(0.999) TCGA-2J-AABH-01 14 22133993 22133993 C T OR4E2 Missense_Mutation p.R233C 0.23 deleterious(0.02) benign(0.26) TCGA-2J-AABH-01 14 23893229 23893229 T C MYH7 Missense_Mutation p.T937A 0.21 tolerated(0.08) benign(0.143) TCGA-2J-AABH-01 14 62547800 62547800 C T SYT16 Silent p.F414F 0.19 TCGA-2J-AABH-01 15 66832448 66832448 G A ZWILCH Silent p.Q529Q 0.35 TCGA-2J-AABH-01 16 1811270 1811270 G T MAPK8IP3 Missense_Mutation p.E500D 0.23 tolerated(0.37) benign(0.004) TCGA-2J-AABH-01 16 29824835 29824835 C T PRRT2 Missense_Mutation p.P154S 0.23 tolerated_low_confidence(0.1) benign(0.109) TCGA-2J-AABH-01 17 37785436 37785451 GACCAACGCCTGCCAT - PPP1R1B Frame_Shift_Del p.R32Sfs*43 0.20 TCGA-2J-AABH-01 17 39389087 39389087 T G KRTAP9-3 Missense_Mutation p.C112G 0.24 deleterious(0.01) probably_damaging(0.969) TCGA-2J-AABH-01 17 42160137 42160137 C A HDAC5 Missense_Mutation p.A840S 0.10 tolerated(0.09) possibly_damaging(0.516) TCGA-2J-AABH-01 17 7328946 7328946 G A C17orf74 5'UTR 0.31 TCGA-2J-AABH-01 17 7579503 7579503 C - TP53 Frame_Shift_Del p.E62Kfs*61 0.39 TCGA-2J-AABH-01 19 1005311 1005311 C T GRIN3B Missense_Mutation p.T604M 0.22 deleterious(0) probably_damaging(0.999) TCGA-2J-AABH-01 19 1236016 1236016 G A C19orf26 Silent p.D28D 0.26 TCGA-2J-AABH-01 19 38994959 38994959 C T RYR1 Missense_Mutation p.R2676W 0.35 possibly_damaging(0.531) TCGA-2J-AABH-01 19 50314661 50314661 A G FUZ Missense_Mutation p.C151R 0.37 deleterious(0) probably_damaging(0.983) TCGA-2J-AABH-01 1 224922304 224922304 C T CNIH3 Silent p.Y117Y 0.20 TCGA-2J-AABH-01 1 237586430 237586430 G A RYR2 Missense_Mutation p.R296Q 0.03 probably_damaging(0.978) TCGA-2J-AABH-01 1 24495932 24495932 G A IFNLR1 Silent p.S114S 0.22 TCGA-2J-AABH-01 1 247902215 247902215 T C OR14K1 Missense_Mutation p.F100S 0.20 deleterious(0) probably_damaging(0.941) TCGA-2J-AABH-01 2 166900451 166900451 C T SCN1A Missense_Mutation p.A591T 0.21 tolerated(0.16) probably_damaging(0.971) TCGA-2J-AABH-01 2 170062574 170062574 G A LRP2 Silent p.R2505R 0.23 TCGA-2J-AABH-01 2 220115248 220115248 C T TUBA4A Silent p.L391L 0.19 TCGA-2J-AABH-01 2 231380272 231380273 - A SP100 Intron 0.35 TCGA-2J-AABH-01 2 60688625 60688625 G A BCL11A Silent p.N474N 0.24 TCGA-2J-AABH-01 2 88829062 88829062 G T TEX37 3'UTR 0.25 TCGA-2J-AABH-01 2 9663463 9663463 T A ADAM17 Missense_Mutation p.E253V 0.24 deleterious(0.01) probably_damaging(0.985) TCGA-2J-AABH-01 3 156978980 156978980 G A VEPH1 Silent p.N815N 0.25 TCGA-2J-AABH-01 4 6596365 6596365 G C MAN2B2 Missense_Mutation p.Q321H 0.24 deleterious(0.05) benign(0.049) TCGA-2J-AABH-01 4 7666172 7666172 G A SORCS2 Missense_Mutation p.V349M 0.21 deleterious(0) probably_damaging(0.97) TCGA-2J-AABH-01 5 140214165 140214165 C T PCDHA7 Missense_Mutation p.A66V 0.22 tolerated_low_confidence(1) benign(0.002) TCGA-2J-AABH-01 5 32229910 32229910 C T MTMR12 Missense_Mutation p.E740K 0.25 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-2J-AABH-01 5 73930609 73930609 T C ENC1 Missense_Mutation p.I568V 0.28 tolerated(1) benign(0.004) TCGA-2J-AABH-01 5 79031709 79031709 C A CMYA5 Nonsense_Mutation p.S2374* 0.19 TCGA-2J-AABH-01 6 32151673 32151673 C T AGER Silent p.R48R 0.16 TCGA-2J-AABH-01 7 18067087 18067087 T C PRPS1L1 Missense_Mutation p.I107V 0.22 deleterious(0.02) benign(0.132) TCGA-2J-AABH-01 7 87138791 87138791 C A ABCB1 Missense_Mutation p.D1097Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-2J-AABH-01 8 143694586 143694586 G T ARC Silent p.I349I 0.19 TCGA-2J-AABH-01 8 143694625 143694625 G A ARC Silent p.F336F 0.18 TCGA-2J-AABH-01 8 145027910 145027910 C T PLEC 5'Flank 0.11 TCGA-2J-AABH-01 8 145756121 145756121 G A ARHGAP39 Missense_Mutation p.R1039C 0.13 deleterious(0) possibly_damaging(0.726) TCGA-2J-AABH-01 9 129851341 129851341 G T ANGPTL2 Nonsense_Mutation p.Y453* 0.23 TCGA-2J-AABH-01 9 33248516 33248516 G C SPINK4 3'UTR 0.26 TCGA-2J-AABH-01 X 130220336 130220336 C T ARHGAP36 Missense_Mutation p.R439C 0.43 deleterious(0.01) probably_damaging(0.993) TCGA-2J-AABH-01 X 152710707 152710707 G A TREX2 Missense_Mutation p.T61M 0.43 deleterious(0.01) probably_damaging(1) TCGA-2J-AABI-01 11 113661207 113661207 G A ATF4P4 RNA 0.36 TCGA-2J-AABI-01 11 46894718 46894718 G A LRP4 Missense_Mutation p.R1506W 0.34 deleterious(0) probably_damaging(1) TCGA-2J-AABI-01 11 6632128 6632128 G T TAF10 3'UTR 0.30 TCGA-2J-AABI-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.59 deleterious(0.03) benign(0.376) TCGA-2J-AABI-01 12 4920048 4920048 C T KCNA6 Missense_Mutation p.R281C 0.17 deleterious(0) probably_damaging(0.999) TCGA-2J-AABI-01 14 70517819 70517819 C T SLC8A3 Silent p.T679T 0.52 TCGA-2J-AABI-01 15 42742345 42742345 G A ZNF106 Missense_Mutation p.H686Y 0.34 deleterious(0.01) benign(0.167) TCGA-2J-AABI-01 15 62232964 62232964 T C VPS13C Missense_Mutation p.N1828S 0.30 tolerated(0.67) benign(0.007) TCGA-2J-AABI-01 15 65667682 65667682 G A IGDCC3 Silent p.V54V 0.41 TCGA-2J-AABI-01 15 73528770 73528770 G A NEO1 Silent p.T458T 0.40 TCGA-2J-AABI-01 16 53265573 53265573 C G CHD9 Nonsense_Mutation p.Y796* 0.30 TCGA-2J-AABI-01 17 62036708 62036708 C T SCN4A Missense_Mutation p.D646N 0.39 deleterious(0) probably_damaging(0.992) TCGA-2J-AABI-01 17 7578199 7578200 - CC TP53 Frame_Shift_Ins p.V217Gfs*31 0.43 TCGA-2J-AABI-01 17 78449379 78449379 G A NPTX1 Missense_Mutation p.T195I 0.39 deleterious(0.03) benign(0.071) TCGA-2J-AABI-01 18 10472020 10472020 C T APCDD1 Missense_Mutation p.R246W 0.35 deleterious(0) probably_damaging(0.951) TCGA-2J-AABI-01 18 48584730 48584730 G - SMAD4 Frame_Shift_Del p.G270Efs*66 0.41 TCGA-2J-AABI-01 19 18306860 18306860 G A MPV17L2 Missense_Mutation p.D206N 0.56 deleterious_low_confidence(0.01) benign(0.074) TCGA-2J-AABI-01 19 35176281 35176281 C T ZNF302 3'UTR 0.59 TCGA-2J-AABI-01 19 44351438 44351438 C T ZNF283 Missense_Mutation p.H229Y 0.53 deleterious(0.01) possibly_damaging(0.539) TCGA-2J-AABI-01 1 248004939 248004939 G A OR11L1 Missense_Mutation p.S87F 0.42 tolerated(0.08) benign(0.006) TCGA-2J-AABI-01 1 42914150 42914150 C T ZMYND12 Missense_Mutation p.E138K 0.45 deleterious(0) possibly_damaging(0.836) TCGA-2J-AABI-01 20 58514231 58514231 G A PPP1R3D Silent p.R252R 0.34 TCGA-2J-AABI-01 22 26423013 26423013 G T MYO18B Missense_Mutation p.R2358I 0.50 tolerated(0.47) benign(0.076) TCGA-2J-AABI-01 2 231936963 231936963 G A PSMD1 Missense_Mutation p.E239K 0.05 tolerated(0.91) benign(0.005) TCGA-2J-AABI-01 2 236649676 236649676 G C AGAP1 Missense_Mutation p.G127A 0.31 tolerated(0.06) benign(0.058) TCGA-2J-AABI-01 3 123385147 123385147 G A MYLK Silent p.R1250R 0.36 TCGA-2J-AABI-01 3 150460358 150460358 T C SIAH2 Missense_Mutation p.E182G 0.38 deleterious(0.04) benign(0.403) TCGA-2J-AABI-01 3 164709985 164709985 G A SI Missense_Mutation p.R1655W 0.32 deleterious(0.02) probably_damaging(1) TCGA-2J-AABI-01 3 39175709 39175709 G A TTC21A Missense_Mutation p.V925M 0.51 deleterious(0) possibly_damaging(0.863) TCGA-2J-AABI-01 4 104511030 104511030 C T TACR3 Missense_Mutation p.V403M 0.32 deleterious(0.02) possibly_damaging(0.496) TCGA-2J-AABI-01 4 177052717 177052717 C G WDR17 Missense_Mutation p.S333C 0.34 deleterious(0.02) possibly_damaging(0.765) TCGA-2J-AABI-01 5 113699700 113699700 T C KCNN2 Splice_Site p.X194_splice 0.40 TCGA-2J-AABI-01 5 140209874 140209874 C T PCDHA6 Missense_Mutation p.T733M 0.35 deleterious_low_confidence(0.01) benign(0.024) TCGA-2J-AABI-01 5 140257253 140257253 C T PCDHA12 Silent p.C732C 0.36 TCGA-2J-AABI-01 7 94040236 94040236 T C COL1A2 Silent p.D411D 0.33 TCGA-2J-AABI-01 9 141015982 141015982 G A CACNA1B Missense_Mutation p.R2184H 0.30 deleterious(0.01) probably_damaging(0.98) TCGA-2J-AABI-01 X 100118509 100118509 G A NOX1 Missense_Mutation p.R73C 0.32 deleterious(0) probably_damaging(1) TCGA-2J-AABI-01 X 138701810 138701810 G C MCF2 Missense_Mutation p.T308R 0.27 deleterious(0) possibly_damaging(0.754) TCGA-2J-AABI-01 X 151900345 151900345 G A MAGEA12 Silent p.S152S 0.35 TCGA-2J-AABK-01 10 108434807 108434807 G A SORCS1 Missense_Mutation p.T647I 0.10 deleterious(0.01) possibly_damaging(0.66) TCGA-2J-AABK-01 10 135020488 135020488 G A KNDC1 Intron 0.16 TCGA-2J-AABK-01 11 57582920 57582920 G - CTNND1 Frame_Shift_Del p.R919Hfs*5 0.11 TCGA-2J-AABK-01 11 62293318 62293318 G A AHNAK Silent p.G2857G 0.04 TCGA-2J-AABK-01 11 89224485 89224485 G A NOX4 5'UTR 0.15 TCGA-2J-AABK-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.08 deleterious(0) possibly_damaging(0.479) TCGA-2J-AABK-01 12 49666572 49666572 A G TUBA1C Silent p.K304K 0.10 TCGA-2J-AABK-01 12 498206 498206 C G KDM5A Missense_Mutation p.E18Q 0.08 deleterious(0) possibly_damaging(0.768) TCGA-2J-AABK-01 12 57323240 57323240 G A SDR9C7 Nonsense_Mutation p.R220* 0.10 TCGA-2J-AABK-01 12 64588215 64588215 C T C12orf66 Missense_Mutation p.V249M 0.09 tolerated(0.23) benign(0.196) TCGA-2J-AABK-01 12 7548911 7548911 G A CD163L1 Silent p.D610D 0.08 TCGA-2J-AABK-01 13 36767849 36767849 C T SOHLH2 Silent p.G190G 0.03 TCGA-2J-AABK-01 14 75469848 75469848 G A EIF2B2 Missense_Mutation p.S52N 0.06 tolerated(0.41) benign(0.005) TCGA-2J-AABK-01 15 62172889 62172889 T A VPS13C Silent p.L3307L 0.09 TCGA-2J-AABK-01 15 91017344 91017344 C T IQGAP1 Missense_Mutation p.R852W 0.11 deleterious(0) probably_damaging(1) TCGA-2J-AABK-01 16 84211348 84211348 C T DNAAF1 Silent p.S693S 0.03 TCGA-2J-AABK-01 17 10366281 10366281 C A MYH4 Missense_Mutation p.M303I 0.06 deleterious(0.02) benign(0.261) TCGA-2J-AABK-01 17 7577123 7577123 A G TP53 Missense_Mutation p.V272A 0.13 deleterious(0.01) probably_damaging(0.983) TCGA-2J-AABK-01 17 78337556 78337556 G A RNF213 Missense_Mutation p.G3906R 0.08 benign(0.275) TCGA-2J-AABK-01 19 17653012 17653012 G A FAM129C Missense_Mutation p.R444Q 0.05 tolerated(0.18) benign(0.232) TCGA-2J-AABK-01 19 46998384 46998384 G A PNMAL2 Silent p.D113D 0.10 TCGA-2J-AABK-01 19 48800579 48800579 G A CCDC114 Missense_Mutation p.S556F 0.07 deleterious(0.02) possibly_damaging(0.563) TCGA-2J-AABK-01 19 56424320 56424320 T A NLRP13 Missense_Mutation p.D288V 0.09 deleterious(0) probably_damaging(0.993) TCGA-2J-AABK-01 19 56702324 56702324 G A ZSCAN5B Silent p.D207D 0.07 TCGA-2J-AABK-01 1 110254908 110254908 T A GSTM5 5'UTR 0.10 TCGA-2J-AABK-01 1 110254909 110254909 C T GSTM5 5'UTR 0.10 TCGA-2J-AABK-01 1 118165467 118165467 C T FAM46C 5'UTR 0.16 TCGA-2J-AABK-01 1 151039879 151039879 A G MLLT11 Missense_Mutation p.N60S 0.04 tolerated(0.86) benign(0.002) TCGA-2J-AABK-01 1 152382385 152382385 G T CRNN Missense_Mutation p.S391R 0.08 tolerated(0.31) benign(0.017) TCGA-2J-AABK-01 1 155023379 155023379 C T DCST1 3'UTR 0.09 TCGA-2J-AABK-01 1 180805698 180805698 C A XPR1 Silent p.A449A 0.05 TCGA-2J-AABK-01 1 201079379 201079379 G C CACNA1S Missense_Mutation p.I57M 0.11 deleterious(0) probably_damaging(0.999) TCGA-2J-AABK-01 1 23111370 23111370 C A EPHB2 Silent p.G204G 0.15 TCGA-2J-AABK-01 1 237948081 237948081 G A RYR2 Missense_Mutation p.A4357T 0.19 benign(0.027) TCGA-2J-AABK-01 1 37948837 37948837 A T ZC3H12A Silent p.G475G 0.13 TCGA-2J-AABK-01 21 32499427 32499427 G A TIAM1 Silent p.S1363S 0.09 TCGA-2J-AABK-01 21 39493319 39493319 C T DSCR4 Missense_Mutation p.E11K 0.08 possibly_damaging(0.486) TCGA-2J-AABK-01 21 46902721 46902721 G A COL18A1 Missense_Mutation p.A743T 0.09 possibly_damaging(0.695) TCGA-2J-AABK-01 2 32774494 32774494 C T BIRC6 Missense_Mutation p.L4364F 0.09 probably_damaging(0.997) TCGA-2J-AABK-01 2 37455921 37455921 C T CEBPZ Missense_Mutation p.V139M 0.07 tolerated(0.1) benign(0.132) TCGA-2J-AABK-01 2 85857980 85857980 C T USP39 Missense_Mutation p.P287L 0.07 deleterious(0) probably_damaging(0.987) TCGA-2J-AABK-01 3 130354557 130354557 C T COL6A6 Silent p.D1681D 0.06 TCGA-2J-AABK-01 3 47041634 47041634 C G NBEAL2 Missense_Mutation p.L1349V 0.04 tolerated(0.09) probably_damaging(0.953) TCGA-2J-AABK-01 3 49049685 49049685 G A WDR6 Missense_Mutation p.D270N 0.11 tolerated(0.18) benign(0.199) TCGA-2J-AABK-01 4 69111329 69111329 C T TMPRSS11B 5'UTR 0.09 TCGA-2J-AABK-01 5 177421284 177421284 C A PROP1 Missense_Mutation p.R55S 0.11 tolerated(0.34) benign(0.012) TCGA-2J-AABK-01 5 79854551 79854551 G A ANKRD34B Nonsense_Mutation p.R430* 0.04 TCGA-2J-AABK-01 6 10756833 10756833 G T TMEM14B 3'UTR 0.14 TCGA-2J-AABK-01 6 31752372 31752372 C T VARS Silent p.E489E 0.05 TCGA-2J-AABK-01 6 83847927 83847927 A G DOPEY1 Missense_Mutation p.K1389R 0.05 tolerated(0.1) benign(0.157) TCGA-2J-AABK-01 7 140481423 140481423 C G BRAF Missense_Mutation p.R462T 0.12 deleterious(0) benign(0.193) TCGA-2J-AABK-01 7 75401253 75401253 G A CCL26 Nonsense_Mutation p.R48* 0.10 TCGA-2J-AABK-01 8 145620538 145620538 C T CPSF1 Silent p.P1043P 0.09 TCGA-2J-AABK-01 9 126202749 126202749 C T DENND1A Missense_Mutation p.A460T 0.07 tolerated(0.44) benign(0.007) TCGA-2J-AABK-01 9 141012490 141012490 G A CACNA1B Missense_Mutation p.R1957H 0.09 deleterious(0.04) benign(0.087) TCGA-2J-AABK-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.11 TCGA-2J-AABK-01 X 129200658 129200658 T C ELF4 3'UTR 0.16 TCGA-2J-AABK-01 X 135426583 135426583 A T GPR112 Missense_Mutation p.S240C 0.25 deleterious(0) possibly_damaging(0.751) TCGA-2J-AABO-01 10 102743445 102743445 G A SEMA4G Missense_Mutation p.A697T 0.16 tolerated(1) possibly_damaging(0.542) TCGA-2J-AABO-01 10 1406022 1406022 G A ADARB2 Missense_Mutation p.A93V 0.23 tolerated(0.15) benign(0.004) TCGA-2J-AABO-01 11 119030980 119030980 C T ABCG4 Missense_Mutation p.T494M 0.22 deleterious(0) probably_damaging(0.909) TCGA-2J-AABO-01 11 119144654 119144654 G C CBL Missense_Mutation p.A223P 0.10 deleterious(0) probably_damaging(0.989) TCGA-2J-AABO-01 11 36597180 36597180 C T RAG1 Missense_Mutation p.R776W 0.10 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-2J-AABO-01 11 56380401 56380401 C T OR5M1 Missense_Mutation p.R193H 0.20 tolerated(0.7) benign(0.002) TCGA-2J-AABO-01 11 57076887 57076887 C T TNKS1BP1 Missense_Mutation p.A1100T 0.08 tolerated(0.56) benign(0.015) TCGA-2J-AABO-01 11 613572 613572 C T IRF7 Missense_Mutation p.V304M 0.05 deleterious(0) probably_damaging(0.985) TCGA-2J-AABO-01 11 63233706 63233706 G A HRASLS5 Missense_Mutation p.P208L 0.06 deleterious(0) probably_damaging(1) TCGA-2J-AABO-01 11 8159921 8159921 T A RIC3 Intron 0.19 TCGA-2J-AABO-01 11 92600211 92600211 C T FAT3 Missense_Mutation p.S3988L 0.13 benign(0.127) TCGA-2J-AABO-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.29 deleterious(0) possibly_damaging(0.479) TCGA-2J-AABO-01 12 52715017 52715017 C T KRT83 Missense_Mutation p.A35T 0.10 tolerated(0.05) benign(0.008) TCGA-2J-AABO-01 12 55688832 55688832 C T OR6C6 Missense_Mutation p.R62H 0.09 deleterious_low_confidence(0.02) benign(0.046) TCGA-2J-AABO-01 12 56862356 56862356 C T SPRYD4 5'UTR 0.07 TCGA-2J-AABO-01 13 42764629 42764629 C A DGKH Missense_Mutation p.A668D 0.08 tolerated(0.59) benign(0.001) TCGA-2J-AABO-01 13 86368010 86368010 C A SLITRK6 3'UTR 0.07 TCGA-2J-AABO-01 14 24709046 24709046 G T TINF2 Missense_Mutation p.P438H 0.12 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-2J-AABO-01 14 59113461 59113461 C T DACT1 Missense_Mutation p.A707V 0.05 tolerated(0.25) benign(0.005) TCGA-2J-AABO-01 14 63174356 63174356 C T KCNH5 Missense_Mutation p.S946N 0.08 tolerated_low_confidence(0.53) benign(0.001) TCGA-2J-AABO-01 15 29346967 29346967 G A APBA2 Missense_Mutation p.G294R 0.06 tolerated_low_confidence(0.27) benign(0.135) TCGA-2J-AABO-01 15 42503943 42503943 C T TMEM87A Missense_Mutation p.R544Q 0.07 tolerated(0.06) possibly_damaging(0.892) TCGA-2J-AABO-01 15 50741645 50741645 G - USP8 Frame_Shift_Del p.E100Kfs*12 0.12 TCGA-2J-AABO-01 16 31091179 31091179 G A ZNF646 Silent p.K1178K 0.11 TCGA-2J-AABO-01 16 67709902 67709902 C T GFOD2 Missense_Mutation p.R105Q 0.09 deleterious(0.02) benign(0.15) TCGA-2J-AABO-01 17 42476539 42476539 C T GPATCH8 Missense_Mutation p.R969Q 0.07 tolerated(0.12) unknown(0) TCGA-2J-AABO-01 17 43345029 43345029 C T MAP3K14-AS1 RNA 0.07 TCGA-2J-AABO-01 17 73836181 73836181 G A UNC13D Missense_Mutation p.S290L 0.10 tolerated(0.17) benign(0.001) TCGA-2J-AABO-01 17 7577141 7577141 C A TP53 Missense_Mutation p.G266V 0.34 deleterious(0) probably_damaging(0.999) TCGA-2J-AABO-01 18 7032156 7032156 T C LAMA1 Missense_Mutation p.Y728C 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-2J-AABO-01 19 3771573 3771573 G T RAX2 Missense_Mutation p.S56R 0.09 deleterious(0) probably_damaging(0.985) TCGA-2J-AABO-01 19 4511956 4511956 G A PLIN4 Silent p.T658T 0.10 TCGA-2J-AABO-01 19 47969356 47969356 G A SLC8A2 Missense_Mutation p.S102L 0.10 deleterious(0) probably_damaging(1) TCGA-2J-AABO-01 19 5654163 5654163 G A SAFB Missense_Mutation p.D540N 0.10 tolerated(0.07) possibly_damaging(0.573) TCGA-2J-AABO-01 19 56895220 56895220 G A ZNF582 3'UTR 0.08 TCGA-2J-AABO-01 19 58453978 58453978 C T ZNF256 Silent p.Q66Q 0.26 TCGA-2J-AABO-01 1 112525004 112525004 G A KCND3 Silent p.D115D 0.10 TCGA-2J-AABO-01 1 114968220 114968220 G T TRIM33 Missense_Mutation p.L516I 0.10 deleterious(0.04) benign(0.334) TCGA-2J-AABO-01 1 115417138 115417138 C T SYCP1 Missense_Mutation p.R204W 0.08 deleterious(0) probably_damaging(1) TCGA-2J-AABO-01 1 1244928 1244928 C T PUSL1 Missense_Mutation p.R140W 0.13 tolerated(0.25) benign(0.006) TCGA-2J-AABO-01 1 152127241 152127241 G A RPTN Silent p.D778D 0.19 TCGA-2J-AABO-01 1 161643018 161643018 A G FCGR2B Silent p.Q215Q 0.13 TCGA-2J-AABO-01 1 19438992 19438992 C T UBR4 Intron 0.07 TCGA-2J-AABO-01 1 65730495 65730495 G A DNAJC6 5'UTR 0.12 TCGA-2J-AABO-01 20 3674202 3674202 T C SIGLEC1 Missense_Mutation p.I1134V 0.09 tolerated(0.11) benign(0.019) TCGA-2J-AABO-01 20 43384834 43384834 G A RIMS4 Missense_Mutation p.R252W 0.23 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-2J-AABO-01 20 60587922 60587923 - GCCT TAF4 Frame_Shift_Ins p.Q531Gfs*68 0.22 TCGA-2J-AABO-01 21 39492431 39492431 G A DSCR4 Missense_Mutation p.T67M 0.03 benign(0.002) TCGA-2J-AABO-01 21 41447025 41447025 C A DSCAM Silent p.L1609L 0.06 TCGA-2J-AABO-01 22 26165019 26165019 G A MYO18B Missense_Mutation p.R379Q 0.14 tolerated_low_confidence(1) benign(0.002) TCGA-2J-AABO-01 22 36122258 36122258 C T APOL5 Missense_Mutation p.P48L 0.09 tolerated(0.3) benign(0.032) TCGA-2J-AABO-01 22 41542773 41542773 G A EP300 Missense_Mutation p.R695H 0.05 unknown(0) TCGA-2J-AABO-01 2 136567237 136567237 C T LCT Missense_Mutation p.E894K 0.08 deleterious(0) possibly_damaging(0.812) TCGA-2J-AABO-01 2 222307700 222307700 T G EPHA4 Missense_Mutation p.K641N 0.07 deleterious(0) probably_damaging(0.989) TCGA-2J-AABO-01 2 239037368 239037368 G A ESPNL Silent p.A412A 0.17 TCGA-2J-AABO-01 2 26534165 26534165 C T GPR113 Missense_Mutation p.A811T 0.10 tolerated(0.16) possibly_damaging(0.596) TCGA-2J-AABO-01 2 36726453 36726453 C T CRIM1 Silent p.R488R 0.11 TCGA-2J-AABO-01 2 37571893 37571893 C T QPCT Missense_Mutation p.R7W 0.08 tolerated_low_confidence(0.07) possibly_damaging(0.689) TCGA-2J-AABO-01 2 95715409 95715409 C T MAL Silent p.D115D 0.19 TCGA-2J-AABO-01 3 105456084 105456084 C T CBLB Silent p.G334G 0.05 TCGA-2J-AABO-01 3 136573585 136573586 - A SLC35G2 Frame_Shift_Ins p.N97Kfs*27 0.08 TCGA-2J-AABO-01 3 56667404 56667404 T G FAM208A Missense_Mutation p.S1139R 0.14 tolerated(0.1) benign(0.005) TCGA-2J-AABO-01 3 58555463 58555463 C T FAM107A Missense_Mutation p.R42Q 0.08 tolerated(0.09) benign(0.272) TCGA-2J-AABO-01 4 110880564 110880564 C G EGF Missense_Mutation p.A346G 0.20 tolerated(0.08) benign(0.347) TCGA-2J-AABO-01 4 114275125 114275125 G A ANK2 Missense_Mutation p.R1784Q 0.11 benign(0.28) TCGA-2J-AABO-01 4 123542066 123542066 C T IL21 Missense_Mutation p.R34H 0.09 tolerated(0.11) benign(0.173) TCGA-2J-AABO-01 4 141543566 141543566 C A TBC1D9 Missense_Mutation p.G1195V 0.09 deleterious_low_confidence(0.02) benign(0.086) TCGA-2J-AABO-01 4 57871882 57871882 G A POLR2B Missense_Mutation p.R405K 0.13 tolerated(0.17) possibly_damaging(0.881) TCGA-2J-AABO-01 4 83905426 83905426 C A LIN54 Missense_Mutation p.R191M 0.12 deleterious(0) probably_damaging(0.947) TCGA-2J-AABO-01 5 122923840 122923840 G A CSNK1G3 Missense_Mutation p.G251D 0.10 deleterious(0) probably_damaging(1) TCGA-2J-AABO-01 5 132559896 132559896 A G FSTL4 Missense_Mutation p.L442P 0.07 deleterious(0.03) probably_damaging(0.999) TCGA-2J-AABO-01 5 94114845 94114845 G A MCTP1 Silent p.D860D 0.22 TCGA-2J-AABO-01 6 43406443 43406443 C T ABCC10 Silent p.T679T 0.10 TCGA-2J-AABO-01 7 150698985 150698985 G A NOS3 Missense_Mutation p.E527K 0.22 deleterious(0) probably_damaging(0.994) TCGA-2J-AABO-01 7 66410199 66410199 C T TMEM248 Silent p.N132N 0.05 TCGA-2J-AABO-01 8 3047474 3047474 G A CSMD1 Silent p.N1786N 0.10 TCGA-2J-AABO-01 8 57026538 57026538 G A MOS Missense_Mutation p.P2S 0.06 deleterious(0) probably_damaging(0.998) TCGA-2J-AABO-01 9 101216358 101216358 G A GABBR2 Missense_Mutation p.R381W 0.13 deleterious(0) possibly_damaging(0.87) TCGA-2J-AABO-01 9 138011686 138011686 G A OLFM1 Missense_Mutation p.A356T 0.15 deleterious(0.01) probably_damaging(0.948) TCGA-2J-AABO-01 9 138670646 138670646 G A KCNT1 Missense_Mutation p.V903I 0.10 tolerated(0.11) benign(0.364) TCGA-2J-AABO-01 X 123518249 123518249 G A TENM1 Missense_Mutation p.R2178C 0.05 deleterious(0) probably_damaging(0.943) TCGA-2J-AABO-01 X 12939864 12939864 G A TLR8 Missense_Mutation p.R902H 0.18 tolerated(0.06) probably_damaging(0.998) TCGA-2J-AABO-01 X 135314079 135314079 G A MAP7D3 Missense_Mutation p.S346L 0.47 tolerated(0.61) benign(0.034) TCGA-2J-AABO-01 X 91090535 91090535 C T PCDH11X Missense_Mutation p.A11V 0.12 tolerated(0.26) benign(0.169) TCGA-2J-AABP-01 10 81111297 81111297 C T PPIF Missense_Mutation p.R124C 0.35 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-2J-AABP-01 11 122726507 122726507 C T CRTAM Nonsense_Mutation p.R199* 0.43 TCGA-2J-AABP-01 11 16068200 16068200 T C SOX6 Missense_Mutation p.T495A 0.05 tolerated(1) benign(0.014) TCGA-2J-AABP-01 11 22696443 22696443 C T GAS2 Missense_Mutation p.R10C 0.42 deleterious(0) possibly_damaging(0.775) TCGA-2J-AABP-01 11 408737 408737 G A SIGIRR Missense_Mutation p.P55L 0.23 tolerated(0.68) benign(0.003) TCGA-2J-AABP-01 11 5364535 5364535 T C OR51B5 Missense_Mutation p.T74A 0.12 tolerated(0.11) benign(0.012) TCGA-2J-AABP-01 11 5536585 5536585 T C UBQLNL Missense_Mutation p.I363V 0.14 tolerated(0.65) benign(0.005) TCGA-2J-AABP-01 11 55890089 55890089 A G OR8H3 Missense_Mutation p.K81E 0.10 deleterious(0.01) benign(0.167) TCGA-2J-AABP-01 11 6498495 6498495 T G ARFIP2 Missense_Mutation p.K292Q 0.50 deleterious(0) probably_damaging(0.996) TCGA-2J-AABP-01 11 6622651 6622651 G A RRP8 Silent p.A215A 0.09 TCGA-2J-AABP-01 11 92715195 92715195 G T MTNR1B Missense_Mutation p.C269F 0.08 tolerated(1) benign(0.004) TCGA-2J-AABP-01 12 10167245 10167245 A G CLEC12B Missense_Mutation p.E105G 0.15 tolerated(0.12) benign(0.015) TCGA-2J-AABP-01 12 110230501 110230501 G A TRPV4 Missense_Mutation p.R594C 0.21 deleterious(0) probably_damaging(1) TCGA-2J-AABP-01 12 25232196 25232196 G A LRMP Missense_Mutation p.V15M 0.11 tolerated_low_confidence(0.11) benign(0.13) TCGA-2J-AABP-01 12 2676769 2676769 G A CACNA1C Silent p.T568T 0.14 TCGA-2J-AABP-01 12 54960852 54960852 G A PDE1B Missense_Mutation p.V70I 0.10 tolerated(0.08) benign(0.028) TCGA-2J-AABP-01 12 56742351 56742351 C G STAT2 Missense_Mutation p.E562D 0.47 tolerated(0.53) benign(0.002) TCGA-2J-AABP-01 12 96704950 96704950 T C CDK17 Silent p.L141L 0.08 TCGA-2J-AABP-01 14 104245101 104245101 T C PPP1R13B Missense_Mutation p.E112G 0.11 deleterious(0.02) benign(0.003) TCGA-2J-AABP-01 14 20612452 20612452 G A OR4N5 Silent p.K186K 0.60 TCGA-2J-AABP-01 14 25325188 25325188 C T STXBP6 Silent p.T135T 0.08 TCGA-2J-AABP-01 15 29346935 29346935 C T APBA2 Missense_Mutation p.S283L 0.15 deleterious_low_confidence(0) benign(0.152) TCGA-2J-AABP-01 15 56735721 56735721 T C MNS1 Silent p.L306L 0.07 TCGA-2J-AABP-01 15 59519753 59519753 C T MYO1E Missense_Mutation p.E183K 0.08 deleterious(0) possibly_damaging(0.699) TCGA-2J-AABP-01 15 62948259 62948259 G A TLN2 Missense_Mutation p.V212M 0.11 deleterious(0) possibly_damaging(0.665) TCGA-2J-AABP-01 17 4621608 4621608 C G ARRB2 Missense_Mutation p.S246C 0.63 deleterious(0) possibly_damaging(0.717) TCGA-2J-AABP-01 17 72860052 72860052 G A FDXR Silent p.I423I 0.09 TCGA-2J-AABP-01 17 7577547 7577547 C T TP53 Missense_Mutation p.G245D 0.58 deleterious(0) probably_damaging(1) TCGA-2J-AABP-01 18 19283559 19283559 C T ABHD3 Silent p.P104P 0.54 TCGA-2J-AABP-01 18 30349623 30349623 T A KLHL14 Missense_Mutation p.Q311L 0.09 deleterious(0.01) possibly_damaging(0.901) TCGA-2J-AABP-01 19 11618812 11618812 T C ECSIT Missense_Mutation p.I264V 0.12 tolerated(0.12) probably_damaging(0.923) TCGA-2J-AABP-01 19 14150430 14150430 C A IL27RA Missense_Mutation p.A110E 0.11 tolerated(0.22) benign(0.011) TCGA-2J-AABP-01 19 15839203 15839203 T C OR10H2 Missense_Mutation p.V117A 0.06 tolerated(0.63) possibly_damaging(0.529) TCGA-2J-AABP-01 19 36043993 36043993 C T ATP4A Silent p.A899A 0.06 TCGA-2J-AABP-01 19 49937267 49937267 G C SLC17A7 Missense_Mutation p.A225G 0.47 tolerated(0.09) benign(0.118) TCGA-2J-AABP-01 19 50779289 50779289 C A MYH14 Missense_Mutation p.S1170Y 0.54 deleterious(0.01) possibly_damaging(0.5) TCGA-2J-AABP-01 19 51875040 51875040 T A NKG7 Missense_Mutation p.E163D 0.07 tolerated(0.47) possibly_damaging(0.899) TCGA-2J-AABP-01 19 53794419 53794419 C T BIRC8 5'UTR 0.15 TCGA-2J-AABP-01 19 55175822 55175822 C T LILRB4 Missense_Mutation p.P181S 0.38 tolerated(1) benign(0.004) TCGA-2J-AABP-01 19 57328548 57328548 T C PEG3 Missense_Mutation p.E421G 0.10 tolerated(0.06) benign(0.156) TCGA-2J-AABP-01 19 5783697 5783697 G A PRR22 Silent p.P187P 0.21 TCGA-2J-AABP-01 19 57931756 57931756 C T ZNF17 Missense_Mutation p.P299L 0.06 tolerated(0.06) possibly_damaging(0.874) TCGA-2J-AABP-01 19 5923907 5923907 C T RANBP3 Missense_Mutation p.E339K 0.14 tolerated(0.09) probably_damaging(0.973) TCGA-2J-AABP-01 19 6853988 6853988 A T VAV1 Missense_Mutation p.K788I 0.08 tolerated(0.57) benign(0.374) TCGA-2J-AABP-01 19 9085442 9085442 C A MUC16 Missense_Mutation p.A2125S 0.33 unknown(0) TCGA-2J-AABP-01 1 107691193 107691193 A T NTNG1 5'UTR 0.11 TCGA-2J-AABP-01 1 109242415 109242415 C A PRPF38B Silent p.R472R 0.09 TCGA-2J-AABP-01 1 1115519 1115519 A T TTLL10 Missense_Mutation p.E102V 0.65 tolerated_low_confidence(0.12) benign(0.032) TCGA-2J-AABP-01 1 152330000 152330000 C T FLG2 Missense_Mutation p.V88I 0.54 unknown(0) TCGA-2J-AABP-01 1 153066012 153066012 C A SPRR2E Missense_Mutation p.K72N 0.10 tolerated_low_confidence(0.53) unknown(0) TCGA-2J-AABP-01 1 154570940 154570940 C A ADAR Missense_Mutation p.A575S 0.13 tolerated(0.15) benign(0.016) TCGA-2J-AABP-01 1 157804321 157804321 T C CD5L Silent p.R198R 0.09 TCGA-2J-AABP-01 1 158449944 158449944 T C OR10R2 Missense_Mutation p.Y93H 0.10 deleterious(0) probably_damaging(1) TCGA-2J-AABP-01 1 18703434 18703434 C T IGSF21 Silent p.T414T 0.06 TCGA-2J-AABP-01 1 205904836 205904836 C T SLC26A9 Missense_Mutation p.R38H 0.10 deleterious(0.01) benign(0.158) TCGA-2J-AABP-01 1 226175604 226175604 C T SDE2 Missense_Mutation p.G376E 0.10 tolerated(0.1) benign(0.024) TCGA-2J-AABP-01 1 6184091 6184091 G A CHD5 Missense_Mutation p.S1539L 0.08 tolerated(0.42) benign(0.002) TCGA-2J-AABP-01 1 76253257 76253257 A G RABGGTB Missense_Mutation p.I27V 0.54 tolerated(0.09) benign(0.137) TCGA-2J-AABP-01 20 20278839 20278839 A G C20orf26 Silent p.V1077V 0.06 TCGA-2J-AABP-01 20 23066355 23066355 T A CD93 Nonsense_Mutation p.K159* 0.08 TCGA-2J-AABP-01 20 33045269 33045269 A G ITCH Missense_Mutation p.R470G 0.05 deleterious(0) probably_damaging(0.989) TCGA-2J-AABP-01 20 3721480 3721480 C T HSPA12B Missense_Mutation p.S21F 0.10 deleterious_low_confidence(0.04) possibly_damaging(0.827) TCGA-2J-AABP-01 20 41400107 41400107 T C PTPRT Missense_Mutation p.K218E 0.34 tolerated(0.06) possibly_damaging(0.824) TCGA-2J-AABP-01 20 50071192 50071192 T C NFATC2 Missense_Mutation p.E581G 0.09 deleterious(0) probably_damaging(0.997) TCGA-2J-AABP-01 20 50310602 50310602 G A ATP9A Missense_Mutation p.T196M 0.39 deleterious(0) probably_damaging(0.999) TCGA-2J-AABP-01 20 62654185 62654185 A T PRPF6 Missense_Mutation p.S575C 0.31 deleterious(0) possibly_damaging(0.806) TCGA-2J-AABP-01 22 37465248 37465248 C T TMPRSS6 Missense_Mutation p.V669M 0.20 deleterious(0) probably_damaging(0.977) TCGA-2J-AABP-01 22 41739536 41739536 G A ZC3H7B Missense_Mutation p.R472Q 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-2J-AABP-01 22 51063767 51063767 C T ARSA Missense_Mutation p.G446S 0.09 tolerated_low_confidence(0.52) benign(0.004) TCGA-2J-AABP-01 2 113742500 113742500 C A IL36G Silent p.S128S 0.57 TCGA-2J-AABP-01 2 131976197 131976197 G A POTEE Silent p.G74G 0.05 TCGA-2J-AABP-01 2 141298554 141298554 T G LRP1B Missense_Mutation p.N2501H 0.11 possibly_damaging(0.904) TCGA-2J-AABP-01 2 158397669 158397669 G T ACVR1C Missense_Mutation p.F386L 0.04 tolerated(0.07) probably_damaging(0.997) TCGA-2J-AABP-01 2 166201075 166201075 T C SCN2A Missense_Mutation p.F858S 0.13 deleterious(0.01) benign(0.259) TCGA-2J-AABP-01 2 172584337 172584337 G A DYNC1I2 Missense_Mutation p.V335M 0.48 deleterious(0) probably_damaging(0.977) TCGA-2J-AABP-01 2 179644650 179644650 G C TTN Intron 0.15 TCGA-2J-AABP-01 2 215848571 215848571 C T ABCA12 Silent p.L1394L 0.36 TCGA-2J-AABP-01 2 227872866 227872866 G C COL4A4 Missense_Mutation p.I1559M 0.16 unknown(0) TCGA-2J-AABP-01 2 50724643 50724643 T C NRXN1 Missense_Mutation p.I943V 0.09 tolerated(0.91) benign(0.013) TCGA-2J-AABP-01 2 72411216 72411216 G A EXOC6B Missense_Mutation p.T766I 0.15 tolerated(0.63) benign(0) TCGA-2J-AABP-01 3 130881264 130881264 C T NEK11 Silent p.I325I 0.11 TCGA-2J-AABP-01 3 166958498 166958498 G C ZBBX 3'UTR 0.17 TCGA-2J-AABP-01 3 32398865 32398865 G T CMTM8 Missense_Mutation p.V50F 0.08 deleterious(0) possibly_damaging(0.713) TCGA-2J-AABP-01 3 46902236 46902236 G T MYL3 Silent p.V79V 0.12 TCGA-2J-AABP-01 3 4735395 4735395 C T ITPR1 Silent p.R1402R 0.11 TCGA-2J-AABP-01 4 155937 155937 T C ZNF718 RNA 0.13 TCGA-2J-AABP-01 4 41984296 41984296 C T DCAF4L1 Missense_Mutation p.R163W 0.07 deleterious(0) possibly_damaging(0.608) TCGA-2J-AABP-01 4 68436828 68436828 G T STAP1 Missense_Mutation p.L49F 0.07 deleterious(0) probably_damaging(0.919) TCGA-2J-AABP-01 4 95506861 95506861 C T PDLIM5 Missense_Mutation p.L183F 0.06 deleterious(0) probably_damaging(0.979) TCGA-2J-AABP-01 4 99399943 99399943 A T TSPAN5 Missense_Mutation p.F157I 0.07 tolerated(0.41) benign(0.158) TCGA-2J-AABP-01 5 137289964 137289964 C T FAM13B Missense_Mutation p.D515N 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-2J-AABP-01 5 13883067 13883067 G T DNAH5 Nonsense_Mutation p.C1040* 0.06 TCGA-2J-AABP-01 5 140182606 140182606 G A PCDHA3 Silent p.S608S 0.31 TCGA-2J-AABP-01 5 140389648 140389648 G T PCDHAC1 3'UTR 0.15 TCGA-2J-AABP-01 5 149375208 149375208 G C TIGD6 Missense_Mutation p.P235R 0.17 deleterious(0) probably_damaging(0.994) TCGA-2J-AABP-01 5 174869606 174869606 G T DRD1 Missense_Mutation p.A166E 0.11 tolerated(0.44) probably_damaging(0.977) TCGA-2J-AABP-01 5 175956566 175956566 G A RNF44 Missense_Mutation p.S365L 0.12 deleterious(0.03) benign(0.012) TCGA-2J-AABP-01 5 179297387 179297387 G A TBC1D9B Missense_Mutation p.R865W 0.37 deleterious(0.03) benign(0.003) TCGA-2J-AABP-01 5 23526354 23526354 A G PRDM9 Missense_Mutation p.E386G 0.05 deleterious(0) benign(0.054) TCGA-2J-AABP-01 5 24593539 24593539 A T CDH10 Missense_Mutation p.S21T 0.06 tolerated(0.68) benign(0.002) TCGA-2J-AABP-01 5 43624207 43624207 G A NNT Missense_Mutation p.R254Q 0.04 deleterious(0) probably_damaging(1) TCGA-2J-AABP-01 5 7727300 7727300 G A ADCY2 Silent p.A599A 0.27 TCGA-2J-AABP-01 6 110146342 110146342 A C FIG4 Silent p.P866P 0.10 TCGA-2J-AABP-01 6 12124753 12124753 T C HIVEP1 Silent p.S1575S 0.06 TCGA-2J-AABP-01 6 151857487 151857487 C T CCDC170 Missense_Mutation p.T31M 0.12 deleterious(0.05) probably_damaging(0.939) TCGA-2J-AABP-01 6 31842799 31842799 C T SLC44A4 Silent p.K83K 0.26 TCGA-2J-AABP-01 6 35888839 35888839 G C SRPK1 5'UTR 0.13 TCGA-2J-AABP-01 6 54254644 54254644 T G TINAG Missense_Mutation p.L451R 0.09 deleterious(0.05) probably_damaging(1) TCGA-2J-AABP-01 7 107866732 107866732 T C NRCAM Missense_Mutation p.E214G 0.12 deleterious(0.03) benign(0.403) TCGA-2J-AABP-01 7 131815128 131815128 C A PLXNA4 3'UTR 0.09 TCGA-2J-AABP-01 7 14620499 14620499 G A DGKB Nonsense_Mutation p.R534* 0.15 TCGA-2J-AABP-01 7 149152729 149152729 C T ZNF777 Missense_Mutation p.V129I 0.07 tolerated_low_confidence(0.11) benign(0) TCGA-2J-AABP-01 7 156963025 156963025 C G UBE3C Missense_Mutation p.R75G 0.54 tolerated(0.13) benign(0.031) TCGA-2J-AABP-01 7 26400616 26400616 C T SNX10 Nonsense_Mutation p.R16* 0.27 TCGA-2J-AABP-01 7 27213854 27213854 G A HOXA10 Silent p.P24P 0.33 TCGA-2J-AABP-01 8 106815772 106815772 C G ZFPM2 3'UTR 0.10 TCGA-2J-AABP-01 8 11189622 11189622 T A SLC35G5 Missense_Mutation p.V336E 0.28 tolerated(1) benign(0.087) TCGA-2J-AABP-01 8 120255673 120255673 C T MAL2 Missense_Mutation p.T159M 0.08 deleterious(0) probably_damaging(0.999) TCGA-2J-AABP-01 8 143999078 143999078 C T CYP11B2 Missense_Mutation p.G60D 0.09 tolerated(0.16) benign(0.139) TCGA-2J-AABP-01 8 144681662 144681662 C T TIGD5 Missense_Mutation p.A530V 0.26 tolerated(0.13) benign(0.006) TCGA-2J-AABP-01 8 144681772 144681772 G A TIGD5 Missense_Mutation p.A567T 0.33 tolerated(0.57) benign(0.016) TCGA-2J-AABP-01 8 19805853 19805853 T C LPL Splice_Site p.X83_splice 0.05 TCGA-2J-AABP-01 9 111617958 111617958 C T ACTL7B Missense_Mutation p.E85K 0.14 tolerated(0.35) benign(0.137) TCGA-2J-AABP-01 9 126164112 126164112 C T DENND1A Intron 0.10 TCGA-2J-AABP-01 9 3829444 3829444 G C GLIS3 Missense_Mutation p.S841C 0.06 tolerated(0.26) probably_damaging(0.998) TCGA-2J-AABP-01 9 84532244 84532244 G A SPATA31D5P RNA 0.08 TCGA-2J-AABP-01 X 123514403 123514403 C T TENM1 Missense_Mutation p.E2728K 0.10 tolerated(0.1) benign(0.087) TCGA-2J-AABP-01 X 153880703 153880703 C T CTAG2 Missense_Mutation p.A158T 0.08 deleterious_low_confidence(0) unknown(0) TCGA-2J-AABP-01 X 15603621 15603621 C T ACE2 Missense_Mutation p.V293I 0.04 tolerated(0.19) possibly_damaging(0.796) TCGA-2J-AABR-01 14 50249311 50249311 C T KLHDC2 Missense_Mutation p.R366W 0.05 deleterious(0.01) benign(0.052) TCGA-2J-AABR-01 16 55519538 55519538 C T MMP2 Silent p.N227N 0.03 TCGA-2J-AABR-01 17 40817827 40817827 G A TUBG2 Silent p.P275P 0.05 TCGA-2J-AABR-01 19 12551790 12551790 G C CTD-3105H18.16 5'UTR 0.06 TCGA-2J-AABR-01 19 56244158 56244158 C T NLRP9 Missense_Mutation p.V347M 0.03 tolerated(0.45) benign(0.003) TCGA-2J-AABR-01 1 186328936 186328936 T C TPR Missense_Mutation p.M462V 0.05 benign(0.019) TCGA-2J-AABR-01 1 46032622 46032622 C T AKR1A1 Missense_Mutation p.R96W 0.04 deleterious(0) probably_damaging(0.923) TCGA-2J-AABR-01 22 27008105 27008105 G A CRYBB1 Missense_Mutation p.S77L 0.05 deleterious(0.05) benign(0.084) TCGA-2J-AABR-01 5 150911532 150911532 C T FAT2 Splice_Site p.X3143_splice 0.05 TCGA-2J-AABR-01 5 37370977 37370977 G C NUP155 Missense_Mutation p.Q35E 0.03 tolerated(0.23) benign(0.002) TCGA-2J-AABR-01 7 31792961 31792961 T A PDE1C 3'UTR 0.04 TCGA-2J-AABT-01 10 129536020 129536020 G C FOXI2 Missense_Mutation p.K161N 0.18 deleterious(0) probably_damaging(0.977) TCGA-2J-AABT-01 10 135106041 135106041 C T TUBGCP2 Silent p.E420E 0.14 TCGA-2J-AABT-01 10 23297251 23297251 C T ARMC3 Nonsense_Mutation p.R626* 0.06 TCGA-2J-AABT-01 11 123813765 123813765 G A OR6T1 Missense_Mutation p.R261C 0.04 deleterious(0) probably_damaging(0.995) TCGA-2J-AABT-01 12 130923012 130923012 G A RIMBP2 Silent p.P501P 0.12 TCGA-2J-AABT-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.12 deleterious(0.03) benign(0.376) TCGA-2J-AABT-01 12 56420631 56420631 G A IKZF4 Missense_Mutation p.R118Q 0.04 deleterious(0.04) benign(0.09) TCGA-2J-AABT-01 12 96412615 96412615 A C LTA4H Missense_Mutation p.L260V 0.13 deleterious(0) benign(0.187) TCGA-2J-AABT-01 13 19999089 19999089 G C TPTE2 Missense_Mutation p.N488K 0.10 deleterious(0.04) possibly_damaging(0.596) TCGA-2J-AABT-01 14 33292241 33292241 C T AKAP6 Missense_Mutation p.S1741F 0.13 deleterious(0) probably_damaging(0.998) TCGA-2J-AABT-01 14 58766562 58766562 C T ARID4A 5'UTR 0.08 TCGA-2J-AABT-01 14 58766563 58766563 A C ARID4A 5'UTR 0.08 TCGA-2J-AABT-01 14 58766564 58766564 C T ARID4A 5'UTR 0.08 TCGA-2J-AABT-01 15 91517846 91517846 C T PRC1 Missense_Mutation p.R440Q 0.02 tolerated(0.07) benign(0.013) TCGA-2J-AABT-01 17 1489346 1489346 C T SLC43A2 Splice_Site p.X360_splice 0.19 TCGA-2J-AABT-01 17 21826294 21826294 T A FAM27L RNA 0.11 TCGA-2J-AABT-01 17 32953994 32953994 G A TMEM132E Missense_Mutation p.G216R 0.12 tolerated(0.09) probably_damaging(1) TCGA-2J-AABT-01 17 7578213 7578213 A - TP53 Frame_Shift_Del p.R213Dfs*34 0.18 TCGA-2J-AABT-01 17 78321495 78321495 C T RNF213 Silent p.Y3120Y 0.11 TCGA-2J-AABT-01 19 55396764 55396765 - A FCAR Frame_Shift_Ins p.N65Kfs*16 0.15 TCGA-2J-AABT-01 19 56244155 56244155 T C NLRP9 Missense_Mutation p.K348E 0.10 deleterious(0) benign(0.255) TCGA-2J-AABT-01 19 7986996 7986996 A G SNAPC2 Missense_Mutation p.K150R 0.10 tolerated(0.16) benign(0.137) TCGA-2J-AABT-01 19 9047851 9047851 C T MUC16 Silent p.P11260P 0.05 TCGA-2J-AABT-01 1 167870912 167870912 G A ADCY10 Nonsense_Mutation p.R142* 0.11 TCGA-2J-AABT-01 1 215408265 215408265 A C KCNK2 Missense_Mutation p.D353A 0.14 deleterious(0) probably_damaging(0.998) TCGA-2J-AABT-01 1 67279820 67279820 G A WDR78 Missense_Mutation p.S847L 0.10 deleterious_low_confidence(0.03) benign(0.016) TCGA-2J-AABT-01 20 30432939 30432939 G A FOXS1 Missense_Mutation p.A136V 0.13 tolerated(0.16) benign(0.001) TCGA-2J-AABT-01 21 17205843 17205843 G T USP25 Nonsense_Mutation p.E724* 0.15 TCGA-2J-AABT-01 21 47549168 47549168 G A COL6A2 Intron 0.08 TCGA-2J-AABT-01 22 38130478 38130478 C T TRIOBP Missense_Mutation p.P1379S 0.08 tolerated_low_confidence(0.05) benign(0.009) TCGA-2J-AABT-01 22 38130531 38130531 C T TRIOBP Silent p.P1396P 0.13 TCGA-2J-AABT-01 2 179640850 179640850 G A TTN Missense_Mutation p.A1914V 0.15 TCGA-2J-AABT-01 2 197189711 197189711 T C HECW2 Missense_Mutation p.H245R 0.11 tolerated(0.11) probably_damaging(0.998) TCGA-2J-AABT-01 2 207345998 207345998 G A ADAM23 Missense_Mutation p.G159S 0.15 tolerated(0.09) probably_damaging(0.976) TCGA-2J-AABT-01 3 149095399 149095399 G T TM4SF1 5'UTR 0.14 TCGA-2J-AABT-01 3 58302276 58302276 A C RPP14 Missense_Mutation p.Y66S 0.13 deleterious(0.03) probably_damaging(0.938) TCGA-2J-AABT-01 4 148984411 148984411 T - ARHGAP10 Frame_Shift_Del p.S715Lfs*6 0.18 TCGA-2J-AABT-01 4 153249472 153249473 - AA FBXW7 Frame_Shift_Ins p.S436Lfs*63 0.17 TCGA-2J-AABT-01 5 89814997 89814997 G A LYSMD3 Missense_Mutation p.S187L 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-2J-AABT-01 6 33639826 33639826 A G ITPR3 Missense_Mutation p.I917V 0.11 tolerated(0.24) possibly_damaging(0.542) TCGA-2J-AABT-01 8 144992109 144992109 G A PLEC Silent p.P4097P 0.10 TCGA-2J-AABT-01 X 24751941 24751941 G A POLA1 Intron 0.16 TCGA-2J-AABU-01 10 48389752 48389752 G A RBP3 Silent p.L376L 0.22 TCGA-2J-AABU-01 11 62760673 62760673 G A SLC22A8 3'UTR 0.34 TCGA-2J-AABU-01 11 65826742 65826742 C T SF3B2 Missense_Mutation p.A418V 0.20 tolerated(0.55) benign(0) TCGA-2J-AABU-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.35 deleterious(0.03) benign(0.376) TCGA-2J-AABU-01 12 49943305 49943305 G A KCNH3 Missense_Mutation p.R517H 0.38 deleterious(0) probably_damaging(0.992) TCGA-2J-AABU-01 12 91502249 91502249 G A LUM Missense_Mutation p.R170W 0.36 deleterious(0.03) benign(0.105) TCGA-2J-AABU-01 14 20019852 20019852 G A POTEM Silent p.Y123Y 0.12 TCGA-2J-AABU-01 14 24886612 24886612 A G NYNRIN Missense_Mutation p.K1886R 0.22 deleterious_low_confidence(0.01) benign(0.427) TCGA-2J-AABU-01 15 48714160 48714160 G A FBN1 Missense_Mutation p.T2520M 0.22 probably_damaging(0.952) TCGA-2J-AABU-01 15 83428187 83428187 A T FSD2 Missense_Mutation p.F721L 0.25 tolerated(0.15) benign(0.02) TCGA-2J-AABU-01 17 42851860 42851860 T C ADAM11 Missense_Mutation p.Y360H 0.23 deleterious(0) benign(0.028) TCGA-2J-AABU-01 17 61345105 61345116 TCAGCCACCAGC - TANC2 Splice_Site p.X271_splice 0.23 TCGA-2J-AABU-01 17 75212444 75212444 G A SEC14L1 Intron 0.25 TCGA-2J-AABU-01 17 7578208 7578208 T C TP53 Missense_Mutation p.H214R 0.41 deleterious(0.02) probably_damaging(0.922) TCGA-2J-AABU-01 19 2278825 2278825 A T C19orf35 Missense_Mutation p.S124T 0.17 tolerated(0.53) benign(0.008) TCGA-2J-AABU-01 19 43237088 43237088 C T PSG3 Missense_Mutation p.S186N 0.22 tolerated(0.07) benign(0.077) TCGA-2J-AABU-01 19 44833545 44833545 A C ZNF112 Silent p.T261T 0.24 TCGA-2J-AABU-01 19 50365046 50365046 G A PNKP Silent p.D427D 0.28 TCGA-2J-AABU-01 19 53572263 53572263 A C ZNF160 Silent p.P508P 0.25 TCGA-2J-AABU-01 1 167893745 167893745 A C MPC2 Missense_Mutation p.I47S 0.20 tolerated(0.11) benign(0.005) TCGA-2J-AABU-01 1 246078893 246078893 T - SMYD3 Frame_Shift_Del p.K251Sfs*3 0.24 TCGA-2J-AABU-01 1 86196283 86196283 A G COL24A1 Silent p.H1697H 0.27 TCGA-2J-AABU-01 2 138163324 138163324 C T THSD7B Missense_Mutation p.T881M 0.25 deleterious(0) possibly_damaging(0.897) TCGA-2J-AABU-01 2 149854968 149854968 T A KIF5C Missense_Mutation p.S719T 0.18 deleterious(0.03) benign(0.437) TCGA-2J-AABU-01 2 50765572 50765572 T G NRXN1 Missense_Mutation p.K694N 0.21 tolerated(0.08) possibly_damaging(0.788) TCGA-2J-AABU-01 2 61304193 61304193 G T KIAA1841 Silent p.V190V 0.04 TCGA-2J-AABU-01 2 77745555 77745555 A G LRRTM4 Silent p.P480P 0.21 TCGA-2J-AABU-01 3 128889154 128889154 C T CNBP 3'UTR 0.23 TCGA-2J-AABU-01 4 103517377 103517377 A G NFKB1 Silent p.K461K 0.20 TCGA-2J-AABU-01 4 20618553 20618553 G A SLIT2 Missense_Mutation p.V1290M 0.25 tolerated(0.1) benign(0.318) TCGA-2J-AABU-01 4 86898803 86898803 T C ARHGAP24 Missense_Mutation p.I296T 0.21 deleterious(0) probably_damaging(0.99) TCGA-2J-AABU-01 5 177022351 177022351 C T TMED9 Silent p.L214L 0.20 TCGA-2J-AABU-01 6 6225029 6225029 A G F13A1 Missense_Mutation p.V288A 0.29 deleterious(0.02) possibly_damaging(0.654) TCGA-2J-AABU-01 6 8430252 8430252 C T SLC35B3 Missense_Mutation p.V48M 0.34 deleterious(0.02) benign(0.064) TCGA-2J-AABU-01 7 100607857 100607857 C T MUC3A Silent p.N668N 0.16 TCGA-2J-AABU-01 7 2617923 2617923 C T IQCE Silent p.L171L 0.24 TCGA-2J-AABU-01 7 37382282 37382282 C T ELMO1 Missense_Mutation p.A5T 0.26 tolerated(0.23) benign(0.029) TCGA-2J-AABU-01 7 37960365 37960365 A C EPDR1 5'UTR 0.09 TCGA-2J-AABU-01 8 52321490 52321490 G A PXDNL Silent p.N898N 0.28 TCGA-2J-AABU-01 9 35612889 35612889 G A CD72 Silent p.L264L 0.03 TCGA-2J-AABU-01 9 35612958 35612958 G A CD72 Nonsense_Mutation p.Q241* 0.03 TCGA-2J-AABV-01 10 50820417 50820417 G A SLC18A3 3'UTR 0.04 TCGA-2J-AABV-01 11 108178642 108178642 G A ATM Missense_Mutation p.R1898Q 0.03 tolerated(0.55) benign(0.001) TCGA-2J-AABV-01 19 10463185 10463185 C T TYK2 Silent p.A1081A 0.04 TCGA-2J-AABV-01 19 5456659 5456659 T C ZNRF4 Missense_Mutation p.I386T 0.03 deleterious(0.01) benign(0.051) TCGA-2J-AABV-01 1 158725052 158725052 C A OR6K6 Missense_Mutation p.D149E 0.03 deleterious(0) probably_damaging(0.999) TCGA-2J-AABV-01 1 237632393 237632393 G A RYR2 Silent p.A538A 0.03 TCGA-2J-AABV-01 20 44402912 44402912 A G WFDC3 3'UTR 0.08 TCGA-2J-AABV-01 2 170044544 170044544 G A LRP2 Silent p.I3088I 0.03 TCGA-2J-AABV-01 2 202606452 202606452 C T ALS2 Missense_Mutation p.A766T 0.04 deleterious(0.04) benign(0.043) TCGA-2J-AABV-01 2 72359477 72359477 C T CYP26B1 Missense_Mutation p.R473H 0.09 tolerated(0.07) possibly_damaging(0.735) TCGA-2J-AABV-01 4 125599973 125599973 A T ANKRD50 Silent p.I200I 0.03 TCGA-2J-AABV-01 5 140167494 140167494 C T PCDHA1 Missense_Mutation p.A540V 0.04 deleterious_low_confidence(0) possibly_damaging(0.731) TCGA-2J-AABV-01 5 38954899 38954899 C T RICTOR Missense_Mutation p.G892S 0.02 deleterious(0.03) probably_damaging(0.991) TCGA-2J-AABV-01 6 127768717 127768717 C T KIAA0408 Silent p.T249T 0.03 TCGA-2J-AABV-01 8 11301851 11301851 C T FAM167A Missense_Mutation p.D24N 0.20 deleterious(0.01) probably_damaging(0.984) TCGA-2J-AABV-01 X 79282761 79282761 A G TBX22 Missense_Mutation p.K269E 0.06 deleterious(0.01) probably_damaging(0.99) TCGA-2L-AAQA-01 10 102672997 102672997 C T FAM178A Missense_Mutation p.P44S 0.35 deleterious_low_confidence(0.05) probably_damaging(0.999) TCGA-2L-AAQA-01 10 88126102 88126102 C A GRID1 Silent p.V16V 0.07 TCGA-2L-AAQA-01 10 99696061 99696061 G A CRTAC1 Missense_Mutation p.A96V 0.23 deleterious(0.05) probably_damaging(0.958) TCGA-2L-AAQA-01 11 1016412 1016414 GAG - MUC6 In_Frame_Del p.S2130del 0.36 TCGA-2L-AAQA-01 11 33369721 33369721 G C HIPK3 Missense_Mutation p.L772F 0.34 tolerated(0.7) benign(0.034) TCGA-2L-AAQA-01 11 35513689 35513689 G A PAMR1 Nonsense_Mutation p.R95* 0.28 TCGA-2L-AAQA-01 11 45936217 45936217 C T PEX16 Missense_Mutation p.G160D 0.27 tolerated(0.44) benign(0.002) TCGA-2L-AAQA-01 12 108013765 108013765 G A BTBD11 Missense_Mutation p.V819I 0.23 deleterious(0.05) possibly_damaging(0.79) TCGA-2L-AAQA-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.30 deleterious(0) possibly_damaging(0.479) TCGA-2L-AAQA-01 12 39117617 39117617 A T CPNE8 Missense_Mutation p.L291M 0.26 deleterious(0.03) possibly_damaging(0.653) TCGA-2L-AAQA-01 12 4920011 4920011 G A KCNA6 Silent p.T268T 0.30 TCGA-2L-AAQA-01 12 50191075 50191075 T A NCKAP5L Missense_Mutation p.I190F 0.32 deleterious(0) probably_damaging(0.998) TCGA-2L-AAQA-01 13 111955512 111955512 C A ARHGEF7 3'UTR 0.06 TCGA-2L-AAQA-01 13 53217652 53217652 C T HNRNPA1L2 3'UTR 0.33 TCGA-2L-AAQA-01 15 23890209 23890209 G A MAGEL2 Missense_Mutation p.A291V 0.07 tolerated(0.18) benign(0.039) TCGA-2L-AAQA-01 15 68119756 68119756 C T SKOR1 Intron 0.07 TCGA-2L-AAQA-01 15 72103116 72103116 C A NR2E3 RNA 0.09 TCGA-2L-AAQA-01 15 74425848 74425848 C T ISLR2 Silent p.R251R 0.31 TCGA-2L-AAQA-01 16 20370532 20370532 G A PDILT 3'UTR 0.30 TCGA-2L-AAQA-01 16 69973964 69973964 C A WWP2 3'UTR 0.11 TCGA-2L-AAQA-01 17 32647821 32647821 C T CCL8 Silent p.I65I 0.33 TCGA-2L-AAQA-01 17 56492904 56492908 AGGGC - RNF43 Frame_Shift_Del p.A11Lfs*27 0.21 TCGA-2L-AAQA-01 17 74097870 74097870 C T EXOC7 Silent p.T67T 0.46 TCGA-2L-AAQA-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.46 tolerated(0.11) benign(0.308) TCGA-2L-AAQA-01 17 80616499 80616499 C T RAB40B Missense_Mutation p.A145T 0.34 deleterious(0) possibly_damaging(0.61) TCGA-2L-AAQA-01 18 25570188 25570188 C T CDH2 Missense_Mutation p.V491I 0.45 tolerated(0.19) benign(0.006) TCGA-2L-AAQA-01 18 56246544 56246544 A T ALPK2 Missense_Mutation p.D488E 0.43 tolerated(0.25) benign(0.101) TCGA-2L-AAQA-01 18 74153538 74153538 G T ZNF516 Silent p.G491G 0.14 TCGA-2L-AAQA-01 19 15567402 15567402 G A RASAL3 Missense_Mutation p.A496V 0.28 deleterious(0) probably_damaging(0.999) TCGA-2L-AAQA-01 19 1953861 1953861 G A CSNK1G2 Intron 0.29 TCGA-2L-AAQA-01 19 34912428 34912428 T C PDCD2L Missense_Mutation p.S268P 0.30 deleterious(0) probably_damaging(0.974) TCGA-2L-AAQA-01 19 44662288 44662288 C T ZNF234 3'UTR 0.29 TCGA-2L-AAQA-01 19 56042597 56042597 G A SBK2 Silent p.Y123Y 0.29 TCGA-2L-AAQA-01 19 56600294 56600294 G A ZNF787 Missense_Mutation p.R83W 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-2L-AAQA-01 19 8595429 8595429 C T MYO1F Missense_Mutation p.R691Q 0.03 deleterious(0.01) possibly_damaging(0.475) TCGA-2L-AAQA-01 1 100336383 100336383 G A AGL Missense_Mutation p.V306I 0.33 tolerated(0.53) benign(0.005) TCGA-2L-AAQA-01 1 114445373 114445373 A G AP4B1 Silent p.Y75Y 0.46 TCGA-2L-AAQA-01 1 1560722 1560722 G A MIB2 Missense_Mutation p.G375R 0.10 deleterious(0) probably_damaging(0.996) TCGA-2L-AAQA-01 1 176833536 176833536 C T ASTN1 Missense_Mutation p.E1257K 0.13 deleterious_low_confidence(0) benign(0.292) TCGA-2L-AAQA-01 1 86590761 86590761 C T COL24A1 Missense_Mutation p.E420K 0.40 tolerated(0.3) benign(0.136) TCGA-2L-AAQA-01 20 3145622 3145622 G T LZTS3 Missense_Mutation p.S500R 0.07 deleterious(0) probably_damaging(0.972) TCGA-2L-AAQA-01 20 5100411 5100411 G A PCNA Missense_Mutation p.L12F 0.07 tolerated(0.11) possibly_damaging(0.497) TCGA-2L-AAQA-01 20 51871827 51871827 G A TSHZ2 Silent p.A610A 0.25 TCGA-2L-AAQA-01 20 56227349 56227349 G - PMEPA1 Frame_Shift_Del p.S209Afs*61 0.26 TCGA-2L-AAQA-01 21 41385178 41385178 G A DSCAM Missense_Mutation p.T1941M 0.29 tolerated_low_confidence(0.19) possibly_damaging(0.715) TCGA-2L-AAQA-01 22 38153721 38153721 G A TRIOBP Missense_Mutation p.R1930Q 0.46 deleterious(0.03) probably_damaging(0.99) TCGA-2L-AAQA-01 22 38165362 38165362 C T TRIOBP Missense_Mutation p.R2277W 0.15 deleterious(0) probably_damaging(0.958) TCGA-2L-AAQA-01 2 106710580 106710580 G A UXS1 Missense_Mutation p.H394Y 0.26 deleterious(0.01) benign(0.033) TCGA-2L-AAQA-01 2 121106698 121106698 C T INHBB Missense_Mutation p.R158C 0.28 deleterious(0.05) possibly_damaging(0.825) TCGA-2L-AAQA-01 2 12858610 12858610 T G TRIB2 Silent p.S59S 0.28 TCGA-2L-AAQA-01 2 173333979 173333979 T A ITGA6 Missense_Mutation p.W172R 0.30 deleterious(0.03) probably_damaging(0.919) TCGA-2L-AAQA-01 2 225338866 225338866 G A CUL3 3'UTR 0.20 TCGA-2L-AAQA-01 2 26682924 26682924 C A OTOF Missense_Mutation p.G1988V 0.12 deleterious(0) probably_damaging(1) TCGA-2L-AAQA-01 2 27607706 27607706 C T PPM1G Missense_Mutation p.R220H 0.04 tolerated(0.11) benign(0) TCGA-2L-AAQA-01 2 73457283 73457283 G A PRADC1 Silent p.Y42Y 0.25 TCGA-2L-AAQA-01 3 10107621 10107621 C T FANCD2 Silent p.F781F 0.22 TCGA-2L-AAQA-01 3 119962542 119962542 C T GPR156 Missense_Mutation p.G60R 0.30 deleterious(0) probably_damaging(1) TCGA-2L-AAQA-01 3 178936074 178936074 C G PIK3CA Missense_Mutation p.P539R 0.25 deleterious(0) possibly_damaging(0.796) TCGA-2L-AAQA-01 3 4722339 4722339 G A ITPR1 Missense_Mutation p.G1009R 0.33 deleterious(0.04) benign(0.114) TCGA-2L-AAQA-01 3 87276538 87276538 C T CHMP2B 5'UTR 0.24 TCGA-2L-AAQA-01 3 97851871 97851871 G A OR5H1 Silent p.T110T 0.28 TCGA-2L-AAQA-01 4 155156138 155156138 C T DCHS2 Silent p.T2767T 0.04 TCGA-2L-AAQA-01 5 10973809 10973809 A C CTNND2 Missense_Mutation p.V1145G 0.30 tolerated(0.21) benign(0.003) TCGA-2L-AAQA-01 5 121362757 121362757 G A SRFBP1 Missense_Mutation p.R409K 0.36 tolerated(0.43) benign(0.083) TCGA-2L-AAQA-01 5 140052939 140052939 G A DND1 Missense_Mutation p.A20V 0.20 tolerated(0.52) benign(0.022) TCGA-2L-AAQA-01 5 140745619 140745619 C T PCDHGA5 Silent p.G574G 0.33 TCGA-2L-AAQA-01 5 150885588 150885588 G A FAT2 Silent p.S4196S 0.28 TCGA-2L-AAQA-01 5 155771526 155771526 C T SGCD Missense_Mutation p.R11W 0.26 deleterious(0.01) possibly_damaging(0.838) TCGA-2L-AAQA-01 5 176318141 176318141 C T HK3 Missense_Mutation p.R104H 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-2L-AAQA-01 5 180166545 180166545 G A OR2Y1 Nonsense_Mutation p.R172* 0.34 TCGA-2L-AAQA-01 5 64868000 64868000 G A PPWD1 Missense_Mutation p.V286I 0.27 tolerated(0.84) benign(0) TCGA-2L-AAQA-01 5 72195908 72195908 G A TNPO1 Nonsense_Mutation p.W805* 0.31 TCGA-2L-AAQA-01 6 33382134 33382134 C A PHF1 Silent p.L289L 0.35 TCGA-2L-AAQA-01 7 107398626 107398626 G A CBLL1 Missense_Mutation p.R160Q 0.30 tolerated(0.19) benign(0.2) TCGA-2L-AAQA-01 7 150035737 150035737 A G RARRES2 Missense_Mutation p.S157P 0.17 deleterious(0.03) possibly_damaging(0.807) TCGA-2L-AAQA-01 7 44042414 44042414 T C SPDYE1 Missense_Mutation p.L162P 0.09 deleterious(0) probably_damaging(0.979) TCGA-2L-AAQA-01 7 99669508 99669508 T C ZNF3 Missense_Mutation p.H200R 0.29 deleterious(0.01) probably_damaging(0.98) TCGA-2L-AAQA-01 8 145660399 145660399 C T TONSL Splice_Site p.X1002_splice 0.28 TCGA-2L-AAQA-01 8 98788032 98788032 C T LAPTM4B Missense_Mutation p.A23V 0.07 tolerated_low_confidence(0.13) benign(0.013) TCGA-2L-AAQA-01 9 139228944 139228944 C T GPSM1 Missense_Mutation p.R37C 0.19 deleterious(0) probably_damaging(1) TCGA-2L-AAQA-01 9 140507340 140507354 CTTTGCAGCCATCCG - ARRDC1 Splice_Site p.X40_splice 0.27 TCGA-2L-AAQA-01 9 34256761 34256761 A G KIF24 Silent p.Y948Y 0.30 TCGA-2L-AAQE-01 10 134896361 134896361 C T GPR123-AS1 3'Flank 0.17 TCGA-2L-AAQE-01 10 50532475 50532475 G A C10orf71 Missense_Mutation p.G629R 0.24 tolerated(0.7) benign(0.001) TCGA-2L-AAQE-01 10 81373876 81373876 T C SFTPA1 3'UTR 0.23 TCGA-2L-AAQE-01 11 26556047 26556047 G A ANO3 Missense_Mutation p.R305Q 0.26 deleterious(0) probably_damaging(0.997) TCGA-2L-AAQE-01 11 31541617 31541617 G A ELP4 Missense_Mutation p.V80I 0.25 tolerated(0.17) probably_damaging(0.954) TCGA-2L-AAQE-01 11 56310189 56310189 G A OR5M11 Missense_Mutation p.P182L 0.25 deleterious(0.01) probably_damaging(0.916) TCGA-2L-AAQE-01 11 58723412 58723412 G A GLYATL1 Missense_Mutation p.R305H 0.27 tolerated(0.3) benign(0.002) TCGA-2L-AAQE-01 12 119568554 119568554 T A SRRM4 Missense_Mutation p.L229H 0.28 tolerated_low_confidence(0.2) probably_damaging(0.966) TCGA-2L-AAQE-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.29 deleterious(0) benign(0.361) TCGA-2L-AAQE-01 12 49254866 49254866 T A RND1 Missense_Mutation p.I123F 0.33 deleterious(0) possibly_damaging(0.709) TCGA-2L-AAQE-01 12 99898356 99898356 A T ANKS1B Missense_Mutation p.F446I 0.26 tolerated(0.13) benign(0.04) TCGA-2L-AAQE-01 14 24784967 24784967 G C LTB4R Missense_Mutation p.S37T 0.27 tolerated(0.42) benign(0.005) TCGA-2L-AAQE-01 14 93693442 93693442 A C UBR7 3'UTR 0.31 TCGA-2L-AAQE-01 15 25223413 25223413 G A SNRPN Silent p.T211T 0.27 TCGA-2L-AAQE-01 16 16150130 16150130 C T ABCC1 Missense_Mutation p.T552I 0.19 tolerated(0.93) possibly_damaging(0.776) TCGA-2L-AAQE-01 16 31391078 31391078 G T ITGAX Missense_Mutation p.V957F 0.36 tolerated(0.21) probably_damaging(0.999) TCGA-2L-AAQE-01 17 56659016 56659016 C G TEX14 Missense_Mutation p.E1089Q 0.21 deleterious(0.03) possibly_damaging(0.572) TCGA-2L-AAQE-01 17 7579575 7579575 G A TP53 Nonsense_Mutation p.Q38* 0.34 TCGA-2L-AAQE-01 17 80196868 80196868 C T SLC16A3 3'UTR 0.14 TCGA-2L-AAQE-01 19 13084387 13084387 G A DAND5 Missense_Mutation p.R170H 0.28 tolerated(0.48) benign(0.075) TCGA-2L-AAQE-01 19 36004243 36004243 G A DMKN Silent p.D45D 0.19 TCGA-2L-AAQE-01 19 40541025 40541025 C T ZNF780B Missense_Mutation p.G581R 0.13 deleterious(0) probably_damaging(0.996) TCGA-2L-AAQE-01 19 46834437 46834437 C T HIF3A Silent p.D579D 0.20 TCGA-2L-AAQE-01 19 49300574 49300574 C T BCAT2 Missense_Mutation p.V238M 0.21 deleterious(0.02) possibly_damaging(0.472) TCGA-2L-AAQE-01 19 8155007 8155007 C T FBN3 Missense_Mutation p.E2054K 0.27 deleterious(0.01) probably_damaging(0.978) TCGA-2L-AAQE-01 1 152286796 152286796 T A FLG Missense_Mutation p.E189V 0.05 possibly_damaging(0.728) TCGA-2L-AAQE-01 1 50574837 50574837 C T ELAVL4 Intron 0.29 TCGA-2L-AAQE-01 20 62166328 62166328 C T PTK6 Silent p.R105R 0.16 TCGA-2L-AAQE-01 21 37609569 37609569 C T DOPEY2 Missense_Mutation p.R878C 0.14 tolerated(0.19) benign(0.006) TCGA-2L-AAQE-01 22 22869193 22869193 G A ZNF280A Silent p.D254D 0.35 TCGA-2L-AAQE-01 2 88125207 88125207 C T RGPD2 Silent p.S14S 0.25 TCGA-2L-AAQE-01 3 142741710 142741710 C T U2SURP Missense_Mutation p.S345F 0.23 deleterious(0) possibly_damaging(0.852) TCGA-2L-AAQE-01 3 146177707 146177707 A - PLSCR2 Frame_Shift_Del p.E69Kfs*13 0.23 TCGA-2L-AAQE-01 3 49062645 49062645 C T IMPDH2 Missense_Mutation p.R355Q 0.26 tolerated(0.1) possibly_damaging(0.532) TCGA-2L-AAQE-01 3 50330022 50330022 C T IFRD2 5'Flank 0.25 TCGA-2L-AAQE-01 5 136315143 136315143 C T SPOCK1 Missense_Mutation p.R336Q 0.24 tolerated(0.36) probably_damaging(0.912) TCGA-2L-AAQE-01 5 140216036 140216036 G A PCDHA7 Missense_Mutation p.E690K 0.11 tolerated_low_confidence(0.07) benign(0.018) TCGA-2L-AAQE-01 5 145719822 145719822 C T POU4F3 Missense_Mutation p.R278C 0.20 deleterious(0) probably_damaging(1) TCGA-2L-AAQE-01 5 36049023 36049023 A T UGT3A2 Missense_Mutation p.L271M 0.13 deleterious(0) probably_damaging(0.988) TCGA-2L-AAQE-01 6 136599814 136599814 G A BCLAF1 Nonsense_Mutation p.R69* 0.10 TCGA-2L-AAQE-01 8 107782214 107782214 G A ABRA Missense_Mutation p.P69S 0.10 tolerated(0.17) benign(0.034) TCGA-2L-AAQE-01 8 139820045 139820045 C T COL22A1 Missense_Mutation p.G487E 0.06 unknown(0) TCGA-2L-AAQE-01 8 41572577 41572577 G A ANK1 Silent p.L573L 0.51 TCGA-2L-AAQE-01 9 132397818 132397818 C T NTMT1 3'UTR 0.13 TCGA-2L-AAQE-01 9 135917536 135917536 C T GTF3C5 Silent p.H72H 0.15 TCGA-2L-AAQE-01 9 21971111 21971111 G A CDKN2A Missense_Mutation p.H83Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-2L-AAQE-01 X 119005785 119005785 C A RNF113A 5'UTR 0.27 TCGA-2L-AAQE-01 X 30237553 30237553 A T MAGEB2 Missense_Mutation p.M286L 0.20 deleterious(0.01) benign(0.348) TCGA-2L-AAQE-01 X 44911012 44911030 CTGCACAAGTAAAAGCAAC - KDM6A Frame_Shift_Del p.S238Lfs*6 0.32 TCGA-2L-AAQE-01 X 75004114 75004114 T C MAGEE2 Missense_Mutation p.H258R 0.23 tolerated(0.07) probably_damaging(0.994) TCGA-2L-AAQI-01 11 111853203 111853203 G A DIXDC1 Missense_Mutation p.G303R 0.07 tolerated(0.29) possibly_damaging(0.867) TCGA-2L-AAQI-01 11 6261751 6261751 G A CNGA4 Missense_Mutation p.E243K 0.14 deleterious(0) probably_damaging(0.993) TCGA-2L-AAQI-01 12 131569149 131569149 G A GPR133 Missense_Mutation p.V538I 0.17 tolerated(0.23) benign(0.008) TCGA-2L-AAQI-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.11 deleterious(0) possibly_damaging(0.479) TCGA-2L-AAQI-01 12 41323657 41323657 C T CNTN1 Missense_Mutation p.R186W 0.14 deleterious(0) probably_damaging(1) TCGA-2L-AAQI-01 12 52845384 52845384 C T KRT6B Missense_Mutation p.R160Q 0.04 deleterious(0.01) possibly_damaging(0.481) TCGA-2L-AAQI-01 12 52867043 52867043 C T KRT6C Missense_Mutation p.R160Q 0.14 deleterious(0.01) probably_damaging(0.914) TCGA-2L-AAQI-01 14 101200618 101200618 C T DLK1 Silent p.C179C 0.12 TCGA-2L-AAQI-01 16 5077996 5077996 C A NAGPA Nonsense_Mutation p.G371* 0.11 TCGA-2L-AAQI-01 16 8890319 8890319 C T TMEM186 Silent p.S44S 0.09 TCGA-2L-AAQI-01 17 62290359 62290359 A C TEX2 Missense_Mutation p.L407V 0.14 tolerated(0.22) possibly_damaging(0.72) TCGA-2L-AAQI-01 17 7577090 7577090 C G TP53 Missense_Mutation p.R283P 0.18 deleterious(0.01) probably_damaging(0.978) TCGA-2L-AAQI-01 17 76968673 76968673 G A LGALS3BP Missense_Mutation p.A248V 0.11 tolerated(0.05) benign(0.209) TCGA-2L-AAQI-01 19 12969441 12969441 G C MAST1 Missense_Mutation p.Q418H 0.06 deleterious(0) probably_damaging(0.983) TCGA-2L-AAQI-01 19 46914987 46914987 C T CCDC8 Missense_Mutation p.E361K 0.14 benign(0.038) TCGA-2L-AAQI-01 19 55144109 55144109 C A LILRB1 Missense_Mutation p.P286T 0.06 tolerated(0.27) benign(0.092) TCGA-2L-AAQI-01 1 160340909 160340909 G A NHLH1 Missense_Mutation p.V130M 0.14 deleterious(0) possibly_damaging(0.623) TCGA-2L-AAQI-01 1 233514924 233514924 T G MLK4 Nonsense_Mutation p.Y724* 0.12 TCGA-2L-AAQI-01 1 248344094 248344094 G A OR2M2 Silent p.T269T 0.13 TCGA-2L-AAQI-01 1 9011714 9011714 C T CA6 Intron 0.08 TCGA-2L-AAQI-01 20 1551562 1551562 C A SIRPB1 Missense_Mutation p.D325Y 0.13 deleterious(0.03) possibly_damaging(0.637) TCGA-2L-AAQI-01 20 31388072 31388072 G A DNMT3B Missense_Mutation p.V625M 0.14 deleterious(0) possibly_damaging(0.694) TCGA-2L-AAQI-01 20 31984682 31984682 C T CDK5RAP1 Silent p.P63P 0.16 TCGA-2L-AAQI-01 20 60503309 60503309 C T CDH4 Silent p.N611N 0.11 TCGA-2L-AAQI-01 20 62193693 62193693 C A HELZ2 Silent p.P2115P 0.10 TCGA-2L-AAQI-01 21 34118020 34118020 G A PAXBP1 Missense_Mutation p.R645C 0.12 tolerated(0.07) benign(0.011) TCGA-2L-AAQI-01 2 213872107 213872107 G A IKZF2 Nonsense_Mutation p.R520* 0.11 TCGA-2L-AAQI-01 3 119331938 119331938 G A PLA1A Missense_Mutation p.V213M 0.11 deleterious(0) probably_damaging(1) TCGA-2L-AAQI-01 3 123813627 123813627 G A KALRN 5'UTR 0.12 TCGA-2L-AAQI-01 3 128292432 128292432 C T C3orf27 Silent p.K47K 0.13 TCGA-2L-AAQI-01 3 150908624 150908624 G A MED12L Missense_Mutation p.G625E 0.12 deleterious(0.02) probably_damaging(1) TCGA-2L-AAQI-01 3 54604065 54604065 C T CACNA2D3 Silent p.I274I 0.13 TCGA-2L-AAQI-01 4 264685 264685 C T ZNF732 3'UTR 0.15 TCGA-2L-AAQI-01 5 140908065 140908065 G C DIAPH1 Missense_Mutation p.L1035V 0.14 benign(0.208) TCGA-2L-AAQI-01 5 176882043 176882043 G A PRR7 5'UTR 0.14 TCGA-2L-AAQI-01 5 33683131 33683131 C A ADAMTS12 Nonsense_Mutation p.E303* 0.14 TCGA-2L-AAQI-01 6 18171668 18171668 C T KDM1B Silent p.A164A 0.05 TCGA-2L-AAQI-01 6 62887161 62887161 G A KHDRBS2 Missense_Mutation p.L50F 0.09 deleterious(0.01) benign(0.084) TCGA-2L-AAQI-01 7 100212491 100212491 C T MOSPD3 Silent p.H171H 0.12 TCGA-2L-AAQI-01 7 137148251 137148251 G A DGKI Missense_Mutation p.H915Y 0.16 tolerated(0.05) benign(0.129) TCGA-2L-AAQI-01 7 38389212 38389212 G T TRGV5 Missense_Mutation p.T33N 0.11 deleterious(0.02) possibly_damaging(0.837) TCGA-2L-AAQI-01 7 53103442 53103442 C T POM121L12 Silent p.P26P 0.14 TCGA-2L-AAQI-01 8 10470671 10470671 C T RP1L1 Missense_Mutation p.V313I 0.14 possibly_damaging(0.851) TCGA-2L-AAQI-01 8 139890170 139890170 C T COL22A1 Missense_Mutation p.A161T 0.13 unknown(0) TCGA-2L-AAQI-01 8 145109606 145109606 G A OPLAH Silent p.F848F 0.13 TCGA-2L-AAQI-01 X 44879977 44879977 T A KDM6A Splice_Site p.X188_splice 0.23 TCGA-2L-AAQJ-01 10 22031001 22031009 AAACGCAAC - MLLT10 3'UTR 0.23 TCGA-2L-AAQJ-01 10 26434386 26434386 G A MYO3A Missense_Mutation p.G810S 0.13 tolerated(0.13) benign(0.009) TCGA-2L-AAQJ-01 10 30336573 30336573 G A KIAA1462 Missense_Mutation p.R57C 0.20 deleterious(0.03) possibly_damaging(0.729) TCGA-2L-AAQJ-01 10 95791760 95791760 G - PLCE1 Frame_Shift_Del p.E320Sfs*6 0.17 TCGA-2L-AAQJ-01 11 102980335 102980335 T C DYNC2H1 Missense_Mutation p.L11P 0.08 benign(0.104) TCGA-2L-AAQJ-01 11 130343367 130343367 C T ADAMTS15 Missense_Mutation p.P835L 0.23 tolerated(0.12) benign(0.002) TCGA-2L-AAQJ-01 11 5462461 5462461 G A OR51I1 Missense_Mutation p.A95V 0.26 deleterious(0.04) benign(0.032) TCGA-2L-AAQJ-01 11 72295749 72295749 G A PDE2A Silent p.A461A 0.20 TCGA-2L-AAQJ-01 11 77907359 77907359 G A USP35 Missense_Mutation p.R23Q 0.20 tolerated(0.18) unknown(0) TCGA-2L-AAQJ-01 12 108051434 108051434 G T BTBD11 Missense_Mutation p.R1085M 0.17 tolerated(0.08) possibly_damaging(0.864) TCGA-2L-AAQJ-01 12 110221488 110221488 G A TRPV4 Missense_Mutation p.R852C 0.20 deleterious_low_confidence(0.04) benign(0.241) TCGA-2L-AAQJ-01 12 112642326 112642326 C A HECTD4 Nonsense_Mutation p.E2599* 0.09 TCGA-2L-AAQJ-01 12 112642327 112642327 G A HECTD4 Silent p.D2598D 0.10 TCGA-2L-AAQJ-01 12 112642347 112642347 T G HECTD4 Missense_Mutation p.T2592P 0.09 probably_damaging(0.997) TCGA-2L-AAQJ-01 12 122825945 122825945 G A CLIP1 Silent p.N602N 0.14 TCGA-2L-AAQJ-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.23 deleterious(0) benign(0.361) TCGA-2L-AAQJ-01 12 6138548 6138548 C T VWF Missense_Mutation p.R976H 0.23 tolerated(0.22) benign(0.003) TCGA-2L-AAQJ-01 12 66641598 66641598 G A IRAK3 Missense_Mutation p.E480K 0.25 deleterious(0) probably_damaging(0.998) TCGA-2L-AAQJ-01 12 67691335 67691335 C T CAND1 Missense_Mutation p.L214F 0.22 deleterious(0.02) possibly_damaging(0.866) TCGA-2L-AAQJ-01 12 7086376 7086376 G C LPCAT3 Missense_Mutation p.L466V 0.28 tolerated(0.21) possibly_damaging(0.593) TCGA-2L-AAQJ-01 13 23912096 23912096 T G SACS Missense_Mutation p.K1973N 0.14 probably_damaging(0.996) TCGA-2L-AAQJ-01 13 39262875 39262875 C T FREM2 Missense_Mutation p.P465L 0.12 tolerated(0.19) benign(0) TCGA-2L-AAQJ-01 13 46357678 46357678 G A SIAH3 Missense_Mutation p.T217M 0.18 deleterious(0.02) probably_damaging(0.971) TCGA-2L-AAQJ-01 14 102028119 102028119 G A DIO3 Missense_Mutation p.D96N 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.537) TCGA-2L-AAQJ-01 14 104618363 104618363 C A KIF26A Silent p.L100L 0.25 TCGA-2L-AAQJ-01 14 28734026 28734026 G T BNIP3P1 RNA 0.22 TCGA-2L-AAQJ-01 14 32562544 32562545 - T ARHGAP5 Frame_Shift_Ins p.E893* 0.20 TCGA-2L-AAQJ-01 14 32623887 32623887 G A ARHGAP5 Nonsense_Mutation p.W1414* 0.23 TCGA-2L-AAQJ-01 14 33291973 33291973 C T AKAP6 Nonsense_Mutation p.R1652* 0.20 TCGA-2L-AAQJ-01 14 36840911 36840911 G T DPPA3P2 RNA 0.20 TCGA-2L-AAQJ-01 15 43552730 43552730 G A TGM5 Missense_Mutation p.R20W 0.11 deleterious(0.01) possibly_damaging(0.671) TCGA-2L-AAQJ-01 15 63881225 63881225 C T USP3 Intron 0.22 TCGA-2L-AAQJ-01 15 79603582 79603582 C T TMED3 5'UTR 0.15 TCGA-2L-AAQJ-01 15 84705713 84705713 G A ADAMTSL3 Missense_Mutation p.R1648Q 0.23 tolerated(1) benign(0.004) TCGA-2L-AAQJ-01 16 30977566 30977567 AG - SETD1A Frame_Shift_Del p.G789Hfs*35 0.24 TCGA-2L-AAQJ-01 16 3706107 3706107 G A DNASE1 Missense_Mutation p.A81T 0.19 tolerated(0.1) benign(0.018) TCGA-2L-AAQJ-01 16 49671084 49671084 C T ZNF423 Missense_Mutation p.R660Q 0.18 tolerated(0.39) benign(0.018) TCGA-2L-AAQJ-01 17 27401145 27401145 G A TIAF1 Missense_Mutation p.R25W 0.13 tolerated_low_confidence(1) benign(0) TCGA-2L-AAQJ-01 17 66253070 66253070 A C AMZ2 Missense_Mutation p.K348T 0.12 tolerated(0.06) possibly_damaging(0.557) TCGA-2L-AAQJ-01 17 72363648 72363648 A T GPR142 Missense_Mutation p.S2C 0.13 deleterious_low_confidence(0) benign(0.018) TCGA-2L-AAQJ-01 17 7577141 7577141 C T TP53 Missense_Mutation p.G266E 0.24 deleterious(0) probably_damaging(0.999) TCGA-2L-AAQJ-01 17 79412086 79412086 G A RP11-1055B8.7 Missense_Mutation p.G906D 0.38 benign(0.344) TCGA-2L-AAQJ-01 17 8791989 8791989 G C PIK3R5 Missense_Mutation p.S372W 0.13 deleterious(0.02) probably_damaging(0.93) TCGA-2L-AAQJ-01 17 9923189 9923189 G AT GAS7 Frame_Shift_Ins p.P70Hfs*33 0.22 TCGA-2L-AAQJ-01 18 3879329 3879329 G A DLGAP1 Missense_Mutation p.A247V 0.20 deleterious(0.01) benign(0.079) TCGA-2L-AAQJ-01 18 42530405 42530405 G A SETBP1 Missense_Mutation p.G367E 0.27 tolerated(0.15) possibly_damaging(0.865) TCGA-2L-AAQJ-01 19 2255335 2255335 C T JSRP1 5'UTR 0.23 TCGA-2L-AAQJ-01 19 34884838 34884838 C T GPI Missense_Mutation p.T321M 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.849) TCGA-2L-AAQJ-01 19 39914871 39914871 C G PLEKHG2 Nonsense_Mutation p.S1033* 0.19 TCGA-2L-AAQJ-01 19 40093198 40093198 A G LGALS13 5'UTR 0.19 TCGA-2L-AAQJ-01 19 43411814 43411814 G A PSG6 Missense_Mutation p.T300M 0.23 deleterious(0) benign(0.409) TCGA-2L-AAQJ-01 19 52272706 52272706 C T FPR2 Silent p.T265T 0.22 TCGA-2L-AAQJ-01 19 5244288 5244288 G A PTPRS Silent p.Y398Y 0.24 TCGA-2L-AAQJ-01 19 57175831 57175831 C T ZNF835 Missense_Mutation p.G246S 0.11 deleterious(0.02) probably_damaging(0.995) TCGA-2L-AAQJ-01 1 156621427 156621427 G A BCAN Missense_Mutation p.G415R 0.16 tolerated(0.16) benign(0.013) TCGA-2L-AAQJ-01 1 175105027 175105027 G T TNN Missense_Mutation p.W1126L 0.21 deleterious(0) probably_damaging(1) TCGA-2L-AAQJ-01 1 205819140 205819140 T G PM20D1 Missense_Mutation p.T21P 0.10 deleterious(0.01) possibly_damaging(0.844) TCGA-2L-AAQJ-01 1 207697152 207697152 C T CR1 Silent p.P228P 0.19 TCGA-2L-AAQJ-01 1 233507804 233507804 G A MLK4 Missense_Mutation p.V525M 0.27 deleterious(0) probably_damaging(0.999) TCGA-2L-AAQJ-01 20 34240896 34240896 C T RBM12 Silent p.S783S 0.24 TCGA-2L-AAQJ-01 20 3673686 3673686 C T SIGLEC1 Missense_Mutation p.A1201T 0.31 tolerated(0.06) probably_damaging(0.947) TCGA-2L-AAQJ-01 21 11098773 11098773 G A BAGE2 RNA 0.06 TCGA-2L-AAQJ-01 21 46596475 46596475 C T ADARB1 Missense_Mutation p.R287W 0.27 deleterious(0) probably_damaging(0.998) TCGA-2L-AAQJ-01 21 47648552 47648552 C G LSS Intron 0.13 TCGA-2L-AAQJ-01 22 18021889 18021889 C T CECR2 Missense_Mutation p.T665I 0.10 tolerated(0.07) benign(0.206) TCGA-2L-AAQJ-01 22 24939822 24939822 C T GUCD1 Missense_Mutation p.A206T 0.29 deleterious(0.02) probably_damaging(0.938) TCGA-2L-AAQJ-01 2 220101856 220101856 T C GLB1L Missense_Mutation p.I635V 0.19 tolerated_low_confidence(0.44) benign(0.001) TCGA-2L-AAQJ-01 2 24533237 24533237 C T ITSN2 Missense_Mutation p.G190E 0.12 tolerated(0.15) benign(0.017) TCGA-2L-AAQJ-01 3 123021980 123021980 C T ADCY5 Silent p.A882A 0.21 TCGA-2L-AAQJ-01 3 178984555 178984555 G A KCNMB3 5'UTR 0.20 TCGA-2L-AAQJ-01 3 30713171 30713171 C T TGFBR2 Nonsense_Mutation p.Q191* 0.24 TCGA-2L-AAQJ-01 3 53752385 53752385 G T CACNA1D Missense_Mutation p.G483V 0.23 tolerated(0.09) possibly_damaging(0.854) TCGA-2L-AAQJ-01 3 8794835 8794835 G A OXTR Missense_Mutation p.T333M 0.29 deleterious(0) possibly_damaging(0.772) TCGA-2L-AAQJ-01 4 16504411 16504411 G A LDB2 Missense_Mutation p.T326M 0.19 tolerated(0.07) probably_damaging(0.915) TCGA-2L-AAQJ-01 4 185599474 185599475 - T PRIMPOL Frame_Shift_Ins p.P314Sfs*9 0.10 TCGA-2L-AAQJ-01 4 56877620 56877620 G T CEP135 Nonsense_Mutation p.E850* 0.18 TCGA-2L-AAQJ-01 4 80246531 80246531 G A NAA11 Silent p.G167G 0.24 TCGA-2L-AAQJ-01 4 96762066 96762066 G T PDHA2 Missense_Mutation p.M255I 0.21 deleterious(0) possibly_damaging(0.895) TCGA-2L-AAQJ-01 5 145886749 145886749 A G TCERG1 Silent p.Q963Q 0.20 TCGA-2L-AAQJ-01 5 146750320 146750320 C A STK32A Nonsense_Mutation p.S255* 0.18 TCGA-2L-AAQJ-01 5 156590194 156590194 G A FAM71B Missense_Mutation p.A361V 0.19 tolerated(0.26) benign(0.026) TCGA-2L-AAQJ-01 5 167489122 167489122 G A TENM2 Missense_Mutation p.R456Q 0.22 tolerated(0.41) benign(0.01) TCGA-2L-AAQJ-01 6 112575382 112575382 C T LAMA4 5'UTR 0.29 TCGA-2L-AAQJ-01 6 32974460 32974460 G A HLA-DOA 3'UTR 0.25 TCGA-2L-AAQJ-01 6 41704646 41704646 A G PGC Missense_Mutation p.Y371H 0.05 deleterious(0) probably_damaging(1) TCGA-2L-AAQJ-01 7 111368508 111368508 C T DOCK4 Missense_Mutation p.R1908Q 0.23 tolerated_low_confidence(0.07) possibly_damaging(0.859) TCGA-2L-AAQJ-01 7 154684403 154684403 C T DPP6 3'UTR 0.22 TCGA-2L-AAQJ-01 7 157926586 157926586 C T PTPRN2 Missense_Mutation p.V447I 0.20 deleterious(0.04) benign(0.058) TCGA-2L-AAQJ-01 7 4188979 4188979 C T SDK1 Silent p.S1503S 0.17 TCGA-2L-AAQJ-01 7 42005299 42005299 G A GLI3 Silent p.H1124H 0.21 TCGA-2L-AAQJ-01 7 44715672 44715672 T C OGDH Missense_Mutation p.L377P 0.14 deleterious(0) probably_damaging(1) TCGA-2L-AAQJ-01 7 5232787 5232787 G A WIPI2 Missense_Mutation p.R38H 0.20 tolerated_low_confidence(0.31) benign(0.01) TCGA-2L-AAQJ-01 7 5644983 5644983 G A FSCN1 Missense_Mutation p.E454K 0.21 deleterious(0) possibly_damaging(0.823) TCGA-2L-AAQJ-01 7 77885649 77885649 C T MAGI2 Missense_Mutation p.R553Q 0.19 tolerated(0.51) possibly_damaging(0.836) TCGA-2L-AAQJ-01 8 121160087 121160087 G T COL14A1 Missense_Mutation p.K2N 0.10 deleterious_low_confidence(0.04) benign(0.075) TCGA-2L-AAQJ-01 8 23294452 23294452 C T ENTPD4 Missense_Mutation p.A457T 0.18 tolerated(0.06) probably_damaging(0.995) TCGA-2L-AAQJ-01 8 25193885 25193885 T C DOCK5 Silent p.L775L 0.16 TCGA-2L-AAQJ-01 8 32505842 32505842 G A NRG1 Intron 0.24 TCGA-2L-AAQJ-01 8 67341337 67341337 G A RRS1 5'UTR 0.22 TCGA-2L-AAQJ-01 8 81888976 81888976 T G PAG1 Missense_Mutation p.T368P 0.10 tolerated(0.18) benign(0.003) TCGA-2L-AAQJ-01 9 131669884 131669884 G A LRRC8A Silent p.P147P 0.21 TCGA-2L-AAQJ-01 9 139944888 139944888 A T ENTPD2 Missense_Mutation p.F293I 0.22 tolerated(0.17) benign(0.034) TCGA-2L-AAQJ-01 9 21974769 21974770 - GGCCGT CDKN2A In_Frame_Ins p.T18_A19dup 0.15 TCGA-2L-AAQJ-01 X 107316507 107316507 G A VSIG1 Missense_Mutation p.G235E 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-2L-AAQJ-01 X 119243069 119243069 C T RHOXF1 3'UTR 0.21 TCGA-2L-AAQJ-01 X 130218925 130218925 T C ARHGAP36 Missense_Mutation p.L281P 0.17 deleterious(0) probably_damaging(0.925) TCGA-2L-AAQJ-01 X 146342062 146342062 A T MIR509-1 RNA 0.17 TCGA-2L-AAQJ-01 X 30326930 30326930 T G NR0B1 Missense_Mutation p.K184T 0.24 tolerated_low_confidence(0.08) benign(0) TCGA-2L-AAQJ-01 X 30327066 30327066 G C NR0B1 Missense_Mutation p.H139D 0.22 deleterious_low_confidence(0) benign(0.381) TCGA-2L-AAQJ-01 X 34148936 34148936 C T FAM47A Missense_Mutation p.R487Q 0.20 tolerated(0.38) possibly_damaging(0.572) TCGA-2L-AAQJ-01 X 40526067 40526067 A C MED14 Missense_Mutation p.L1057W 0.32 deleterious(0) probably_damaging(0.974) TCGA-2L-AAQJ-01 X 48819916 48819916 C T KCND1 Missense_Mutation p.G624S 0.22 tolerated_low_confidence(0.99) benign(0) TCGA-2L-AAQJ-01 X 56310931 56310931 G A KLF8 3'UTR 0.22 TCGA-2L-AAQJ-01 X 83724365 83724365 T A HDX Silent p.T122T 0.15 TCGA-2L-AAQL-01 10 135009218 135009218 G A KNDC1 Missense_Mutation p.V543I 0.23 tolerated(0.24) benign(0.028) TCGA-2L-AAQL-01 10 17169885 17169885 C A CUBN Silent p.G97G 0.14 TCGA-2L-AAQL-01 10 18828549 18828549 C T CACNB2 Missense_Mutation p.R627C 0.16 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-2L-AAQL-01 11 113078701 113078701 C T NCAM1 Missense_Mutation p.A357V 0.06 tolerated(0.06) possibly_damaging(0.499) TCGA-2L-AAQL-01 11 132307148 132307148 G A OPCML Missense_Mutation p.P211L 0.12 deleterious(0) probably_damaging(0.988) TCGA-2L-AAQL-01 11 92532543 92532543 G A FAT3 Missense_Mutation p.V2122I 0.17 benign(0.005) TCGA-2L-AAQL-01 12 25380276 25380276 T C KRAS Missense_Mutation p.Q61R 0.18 tolerated(0.06) benign(0.374) TCGA-2L-AAQL-01 12 97112291 97112291 C T C12orf55 Silent p.S2265S 0.17 TCGA-2L-AAQL-01 14 21875121 21875121 C G CHD8 Missense_Mutation p.C934S 0.16 deleterious(0.01) probably_damaging(0.985) TCGA-2L-AAQL-01 14 64468799 64468799 G C SYNE2 Missense_Mutation p.R1262S 0.19 benign(0.234) TCGA-2L-AAQL-01 16 1843655 1843655 C A IGFALS 5'UTR 0.14 TCGA-2L-AAQL-01 16 19488791 19488791 G A TMC5 Missense_Mutation p.G707D 0.18 deleterious(0) probably_damaging(0.993) TCGA-2L-AAQL-01 16 86544569 86544569 T C FOXF1 Missense_Mutation p.F132L 0.24 deleterious(0.04) probably_damaging(0.971) TCGA-2L-AAQL-01 16 89350085 89350085 C A ANKRD11 Silent p.L955L 0.21 TCGA-2L-AAQL-01 17 7578555 7578555 C A TP53 Splice_Site p.X126_splice 0.30 TCGA-2L-AAQL-01 17 79914915 79914915 C T NOTUM Missense_Mutation p.R244H 0.17 tolerated(0.12) benign(0.11) TCGA-2L-AAQL-01 18 44272163 44272163 C A ST8SIA5 Missense_Mutation p.A94S 0.20 benign(0.04) TCGA-2L-AAQL-01 18 55289087 55289087 C G NARS 5'UTR 0.25 TCGA-2L-AAQL-01 19 1785279 1785279 C A ATP8B3 Missense_Mutation p.K1137N 0.15 tolerated(0.16) possibly_damaging(0.754) TCGA-2L-AAQL-01 19 37310991 37310991 C A ZNF790 Missense_Mutation p.K85N 0.03 tolerated(0.06) benign(0.014) TCGA-2L-AAQL-01 19 3980040 3980040 G C EEF2 Nonsense_Mutation p.Y457* 0.13 TCGA-2L-AAQL-01 19 43439844 43439845 - G PSG7 Frame_Shift_Ins p.G48Rfs*43 0.16 TCGA-2L-AAQL-01 19 6694601 6694601 G A C3 Missense_Mutation p.R999W 0.11 deleterious(0.01) possibly_damaging(0.842) TCGA-2L-AAQL-01 19 8807951 8807951 G C ACTL9 Missense_Mutation p.H367Q 0.15 tolerated(0.49) benign(0.023) TCGA-2L-AAQL-01 1 101705012 101705012 T G S1PR1 Missense_Mutation p.F158V 0.20 tolerated(0.48) benign(0.002) TCGA-2L-AAQL-01 1 104160198 104160198 T G AMY2A Missense_Mutation p.Y46D 0.23 deleterious(0) probably_damaging(0.992) TCGA-2L-AAQL-01 1 11897102 11897102 A G CLCN6 Missense_Mutation p.Q676R 0.23 tolerated(0.79) benign(0.017) TCGA-2L-AAQL-01 1 161166670 161166670 G A ADAMTS4 Missense_Mutation p.R212C 0.17 deleterious(0) possibly_damaging(0.751) TCGA-2L-AAQL-01 1 231298879 231298879 C T TRIM67 Missense_Mutation p.S55L 0.15 tolerated(0.39) benign(0.008) TCGA-2L-AAQL-01 1 247920907 247920907 G T OR1C1 Missense_Mutation p.P268T 0.29 tolerated(0.32) benign(0.391) TCGA-2L-AAQL-01 1 248569553 248569553 C A OR2T1 Missense_Mutation p.F86L 0.14 tolerated(1) benign(0.003) TCGA-2L-AAQL-01 1 66102532 66102532 C T LEPR Missense_Mutation p.T1111M 0.21 tolerated(0.08) possibly_damaging(0.776) TCGA-2L-AAQL-01 1 67147855 67147855 C T SGIP1 Missense_Mutation p.P373L 0.21 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-2L-AAQL-01 1 9085071 9085071 G A SLC2A7 Silent p.Y38Y 0.16 TCGA-2L-AAQL-01 20 48561946 48561946 G A RNF114 Missense_Mutation p.V107M 0.18 tolerated(0.05) possibly_damaging(0.632) TCGA-2L-AAQL-01 21 35281465 35281465 C T AP000304.12 Silent p.V32V 0.18 TCGA-2L-AAQL-01 22 24456384 24456385 - A CABIN1 Intron 0.10 TCGA-2L-AAQL-01 22 50728171 50728171 G A PLXNB2 Silent p.A281A 0.14 TCGA-2L-AAQL-01 2 190535201 190535201 C T ASNSD1 Silent p.L561L 0.18 TCGA-2L-AAQL-01 2 20508209 20508209 G A PUM2 Missense_Mutation p.P219S 0.17 tolerated_low_confidence(0.48) benign(0.001) TCGA-2L-AAQL-01 2 219266400 219266400 C T CTDSP1 Missense_Mutation p.P61S 0.21 tolerated(0.2) probably_damaging(0.998) TCGA-2L-AAQL-01 2 226447451 226447451 G A NYAP2 Missense_Mutation p.V440I 0.17 tolerated(0.08) probably_damaging(0.996) TCGA-2L-AAQL-01 3 112005603 112005603 A G SLC9C1 Silent p.T12T 0.03 TCGA-2L-AAQL-01 3 132415576 132415576 G A NPHP3 Missense_Mutation p.R724C 0.19 tolerated(0.22) benign(0.001) TCGA-2L-AAQL-01 3 30713755 30713758 CCTC - TGFBR2 Frame_Shift_Del p.L386Tfs*26 0.20 TCGA-2L-AAQL-01 5 1074737 1074737 C A SLC12A7 Missense_Mutation p.A673S 0.19 deleterious(0.01) probably_damaging(0.989) TCGA-2L-AAQL-01 5 134130654 134130654 G A DDX46 Missense_Mutation p.V581I 0.23 tolerated(1) benign(0.02) TCGA-2L-AAQL-01 5 140167336 140167336 C T PCDHA1 Silent p.N487N 0.22 TCGA-2L-AAQL-01 5 140751953 140751953 C T PCDHGB3 Silent p.F664F 0.19 TCGA-2L-AAQL-01 5 15928366 15928366 C T FBXL7 Silent p.N165N 0.20 TCGA-2L-AAQL-01 6 105474175 105474175 C A LIN28B Missense_Mutation p.S67R 0.18 deleterious(0.02) possibly_damaging(0.861) TCGA-2L-AAQL-01 6 124979616 124979616 C A NKAIN2 Intron 0.13 TCGA-2L-AAQL-01 6 51944795 51944795 G A PKHD1 Missense_Mutation p.S98F 0.23 deleterious(0.01) possibly_damaging(0.711) TCGA-2L-AAQL-01 7 126173853 126173853 G A GRM8 Missense_Mutation p.T528M 0.13 tolerated(1) benign(0.091) TCGA-2L-AAQL-01 7 128495282 128495282 G AA FLNC Frame_Shift_Ins p.D2389Kfs*2 0.09 TCGA-2L-AAQL-01 7 142655036 142655036 T G KEL Missense_Mutation p.K184Q 0.18 tolerated(0.48) benign(0.016) TCGA-2L-AAQL-01 7 21640427 21640427 G A DNAH11 Missense_Mutation p.R1045Q 0.14 probably_damaging(0.972) TCGA-2L-AAQL-01 7 43351452 43351452 C T HECW1 Nonsense_Mutation p.R40* 0.18 TCGA-2L-AAQL-01 7 75634627 75634627 C T STYXL1 Silent p.K183K 0.16 TCGA-2L-AAQL-01 7 77212936 77212936 T G PTPN12 Missense_Mutation p.F117C 0.18 deleterious(0) probably_damaging(0.999) TCGA-2L-AAQL-01 7 96653995 96653995 T A DLX5 5'UTR 0.20 TCGA-2L-AAQL-01 8 11637109 11637109 C G NEIL2 Silent p.V47V 0.24 TCGA-2L-AAQL-01 8 22006465 22006465 C T LGI3 Silent p.P285P 0.33 TCGA-2L-AAQL-01 8 54684564 54684564 C T ATP6V1H Missense_Mutation p.S345N 0.28 deleterious(0.05) probably_damaging(0.959) TCGA-2L-AAQL-01 9 1056510 1056510 A G DMRT2 Missense_Mutation p.D308G 0.16 deleterious(0) probably_damaging(0.998) TCGA-2L-AAQL-01 9 130486669 130486670 - G TTC16 Intron 0.10 TCGA-2L-AAQL-01 9 137593107 137593107 C T COL5A1 Silent p.S194S 0.21 TCGA-2L-AAQL-01 9 137734150 137734150 G A COL5A1 3'UTR 0.14 TCGA-2L-AAQL-01 9 26919394 26919394 A G PLAA Missense_Mutation p.L444P 0.03 deleterious(0) probably_damaging(1) TCGA-2L-AAQL-01 9 4118378 4118378 C T GLIS3 Missense_Mutation p.G367D 0.31 tolerated(0.14) benign(0.022) TCGA-2L-AAQL-01 9 95475673 95475673 G A BICD2 3'UTR 0.17 TCGA-2L-AAQL-01 X 129185988 129185988 G A BCORL1 Missense_Mutation p.R1617H 0.21 benign(0.049) TCGA-2L-AAQL-01 X 70642968 70642970 AAG - TAF1 In_Frame_Del p.E1506del 0.33 TCGA-2L-AAQL-01 X 73062286 73062286 C A XIST RNA 0.07 TCGA-2L-AAQM-01 10 120818809 120818809 G A EIF3A Missense_Mutation p.P515L 0.21 deleterious(0) unknown(0) TCGA-2L-AAQM-01 10 32561075 32561075 C G EPC1 Missense_Mutation p.L651F 0.85 deleterious(0) probably_damaging(0.996) TCGA-2L-AAQM-01 10 63170286 63170286 G T TMEM26 Missense_Mutation p.L301I 0.03 tolerated(0.15) possibly_damaging(0.796) TCGA-2L-AAQM-01 11 113679043 113679043 C T USP28 Missense_Mutation p.G761S 0.82 tolerated(0.27) possibly_damaging(0.817) TCGA-2L-AAQM-01 11 119535743 119535743 T C PVRL1 Missense_Mutation p.D423G 0.04 deleterious(0) possibly_damaging(0.78) TCGA-2L-AAQM-01 11 62406863 62406863 G A GANAB Missense_Mutation p.L74F 0.23 deleterious(0.02) benign(0.043) TCGA-2L-AAQM-01 11 64574572 64574572 T C MEN1 Splice_Site p.X280_splice 0.86 TCGA-2L-AAQM-01 11 64595223 64595223 C T CDC42BPG Missense_Mutation p.E1334K 0.38 deleterious(0) probably_damaging(0.977) TCGA-2L-AAQM-01 12 118588698 118588698 T A TAOK3 3'UTR 0.09 TCGA-2L-AAQM-01 12 123472826 123472826 C T PITPNM2 Silent p.K984K 0.03 TCGA-2L-AAQM-01 12 99007736 99007736 G A IKBIP Missense_Mutation p.T227M 0.04 tolerated(0.21) benign(0.004) TCGA-2L-AAQM-01 14 76905998 76905998 G A ESRRB Missense_Mutation p.R101H 0.49 deleterious(0) probably_damaging(0.999) TCGA-2L-AAQM-01 15 102294272 102294272 C G DNM1P47 RNA 0.17 TCGA-2L-AAQM-01 16 70508567 70508567 G T FUK Missense_Mutation p.A709S 0.21 deleterious(0.01) benign(0.217) TCGA-2L-AAQM-01 16 87921837 87921837 T G CA5A Missense_Mutation p.E272D 0.88 tolerated(0.14) probably_damaging(0.921) TCGA-2L-AAQM-01 17 36065033 36065033 C A HNF1B Missense_Mutation p.L410F 0.04 deleterious(0) probably_damaging(1) TCGA-2L-AAQM-01 17 53007467 53007467 A T TOM1L1 Missense_Mutation p.R252W 0.02 deleterious(0) probably_damaging(1) TCGA-2L-AAQM-01 17 77042773 77042773 A G C1QTNF1 Missense_Mutation p.K98E 0.06 deleterious(0) probably_damaging(0.99) TCGA-2L-AAQM-01 19 10084482 10084482 T C COL5A3 Missense_Mutation p.T1188A 0.48 possibly_damaging(0.453) TCGA-2L-AAQM-01 19 44611966 44611966 G A ZNF224 Nonsense_Mutation p.W551* 0.24 TCGA-2L-AAQM-01 19 51518155 51518155 C T KLK10 Silent p.S244S 0.07 TCGA-2L-AAQM-01 19 5831898 5831898 G A FUT6 Silent p.P227P 0.10 TCGA-2L-AAQM-01 1 115216566 115216585 CAGTGAGATCATTAGCCCTT - AMPD1 Frame_Shift_Del p.K673Ifs*4 0.79 TCGA-2L-AAQM-01 1 16257931 16257937 TGCCAAG - SPEN Frame_Shift_Del p.A1733Lfs*15 0.24 TCGA-2L-AAQM-01 1 162769621 162769621 T G HSD17B7 Missense_Mutation p.F179C 0.87 deleterious(0) probably_damaging(0.998) TCGA-2L-AAQM-01 1 225971060 225971060 A T SRP9 Missense_Mutation p.D44V 0.70 deleterious(0) probably_damaging(0.979) TCGA-2L-AAQM-01 1 54426130 54426130 C A LRRC42 Missense_Mutation p.T236K 0.37 tolerated(1) benign(0.012) TCGA-2L-AAQM-01 1 70303923 70303923 C T LRRC7 Missense_Mutation p.R164W 0.07 deleterious(0) probably_damaging(0.938) TCGA-2L-AAQM-01 20 19955543 19955543 A G RIN2 Missense_Mutation p.S341G 0.15 tolerated(0.23) benign(0.005) TCGA-2L-AAQM-01 20 20018172 20018172 T C CRNKL1 Missense_Mutation p.E725G 0.48 deleterious(0.03) benign(0.005) TCGA-2L-AAQM-01 20 50769153 50769153 C G ZFP64 Missense_Mutation p.L526F 0.04 tolerated(0.07) possibly_damaging(0.797) TCGA-2L-AAQM-01 21 15858102 15858102 T C SAMSN1 3'UTR 0.94 TCGA-2L-AAQM-01 22 36587621 36587621 C T APOL4 Silent p.G185G 0.38 TCGA-2L-AAQM-01 3 111688612 111688612 C T PHLDB2 Missense_Mutation p.H1131Y 0.10 deleterious(0) probably_damaging(0.983) TCGA-2L-AAQM-01 3 52598121 52598121 A C PBRM1 Missense_Mutation p.L1249V 0.22 deleterious(0) possibly_damaging(0.567) TCGA-2L-AAQM-01 4 166946577 166946577 G T TLL1 Silent p.G384G 0.45 TCGA-2L-AAQM-01 4 47676485 47676485 A T CORIN Missense_Mutation p.C428S 0.04 deleterious(0.01) probably_damaging(0.98) TCGA-2L-AAQM-01 4 48621345 48621345 C G FRYL Missense_Mutation p.R119S 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-2L-AAQM-01 4 93511319 93511319 G T GRID2 Missense_Mutation p.E42D 0.02 tolerated(0.5) possibly_damaging(0.867) TCGA-2L-AAQM-01 4 99064373 99064373 G A STPG2 5'UTR 0.38 TCGA-2L-AAQM-01 5 65309380 65309380 C A ERBB2IP Silent p.L130L 0.18 TCGA-2L-AAQM-01 5 65474799 65474799 A T SREK1 3'UTR 0.45 TCGA-2L-AAQM-01 6 129828687 129828687 T A LAMA2 Silent p.P2919P 0.12 TCGA-2L-AAQM-01 6 28097476 28097480 ATGTG - ZSCAN16 Frame_Shift_Del p.C266* 0.85 TCGA-2L-AAQM-01 6 38750805 38750805 C A DNAH8 Missense_Mutation p.P545Q 0.87 benign(0.016) TCGA-2L-AAQM-01 7 30066109 30066109 A C FKBP14 Missense_Mutation p.W6G 0.03 tolerated(0.21) benign(0) TCGA-2L-AAQM-01 9 132502126 132502126 C T PTGES Missense_Mutation p.D75N 0.51 deleterious(0.03) probably_damaging(0.925) TCGA-2L-AAQM-01 9 140880925 140880925 C A CACNA1B Silent p.I610I 0.42 TCGA-2L-AAQM-01 X 73046100 73046100 G A XIST RNA 0.04 TCGA-2L-AAQM-01 X 85969720 85969720 A G DACH2 Missense_Mutation p.I367M 0.14 deleterious(0) possibly_damaging(0.541) TCGA-3A-A9I5-01 10 17949641 17949641 A G MRC1L1 Silent p.L1335L 0.16 TCGA-3A-A9I5-01 10 31799625 31799625 T C ZEB1 Missense_Mutation p.L170S 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-3A-A9I5-01 11 6340250 6340250 G A PRKCDBP 3'UTR 0.14 TCGA-3A-A9I5-01 12 124414897 124414897 G C DNAH10OS 3'UTR 0.18 TCGA-3A-A9I5-01 12 40716292 40716294 TGA - LRRK2 In_Frame_Del p.M1831del 0.15 TCGA-3A-A9I5-01 13 21205194 21205194 A G IFT88 Missense_Mutation p.R456G 0.16 deleterious(0.01) benign(0.064) TCGA-3A-A9I5-01 13 40293931 40293931 C A COG6 Missense_Mutation p.F517L 0.12 deleterious(0.01) possibly_damaging(0.844) TCGA-3A-A9I5-01 15 102294396 102294396 G C DNM1P47 RNA 0.15 TCGA-3A-A9I5-01 15 39544251 39544251 T C C15orf54 5'UTR 0.19 TCGA-3A-A9I5-01 15 72611989 72611989 G A CELF6 Missense_Mutation p.T76M 0.09 deleterious(0) probably_damaging(0.995) TCGA-3A-A9I5-01 16 1537593 1537593 G A PTX4 Missense_Mutation p.R169W 0.16 tolerated(0.15) benign(0.006) TCGA-3A-A9I5-01 16 86602198 86602198 G A FOXC2 Silent p.A419A 0.16 TCGA-3A-A9I5-01 17 40318480 40318480 C A KCNH4 Missense_Mutation p.A559S 0.31 tolerated(1) benign(0.007) TCGA-3A-A9I5-01 19 38976333 38976333 G A RYR1 Missense_Mutation p.V1680M 0.19 possibly_damaging(0.884) TCGA-3A-A9I5-01 19 42860499 42860499 C T MEGF8 Missense_Mutation p.R1439C 0.14 deleterious(0) probably_damaging(0.975) TCGA-3A-A9I5-01 19 44417694 44417695 TT - ZNF45 Frame_Shift_Del p.R632Sfs*11 0.15 TCGA-3A-A9I5-01 19 50101153 50101153 C T PRR12 Silent p.P1187P 0.18 TCGA-3A-A9I5-01 19 51330227 51330227 G A KLK15 Missense_Mutation p.R130C 0.19 tolerated(0.06) benign(0.126) TCGA-3A-A9I5-01 19 58718233 58718233 G T ZNF274 Missense_Mutation p.D135Y 0.19 deleterious(0) possibly_damaging(0.563) TCGA-3A-A9I5-01 1 147230999 147230999 C G GJA5 Missense_Mutation p.E116D 0.27 tolerated(0.41) benign(0.002) TCGA-3A-A9I5-01 1 151611414 151611414 T C SNX27 Missense_Mutation p.I121T 0.11 deleterious(0) probably_damaging(0.997) TCGA-3A-A9I5-01 1 158325907 158325907 C T CD1E Intron 0.12 TCGA-3A-A9I5-01 1 184764871 184764871 A T FAM129A Missense_Mutation p.L676H 0.11 tolerated(0.24) possibly_damaging(0.632) TCGA-3A-A9I5-01 1 233515284 233515284 A G MLK4 Silent p.G844G 0.10 TCGA-3A-A9I5-01 20 51872260 51872260 C T TSHZ2 Missense_Mutation p.R755C 0.16 tolerated(0.06) benign(0.004) TCGA-3A-A9I5-01 21 33104026 33104026 T G SCAF4 5'UTR 0.12 TCGA-3A-A9I5-01 22 40075258 40075258 C T CACNA1I Silent p.D1734D 0.21 TCGA-3A-A9I5-01 22 43625113 43625113 C T SCUBE1 Missense_Mutation p.R350H 0.20 tolerated(0.06) benign(0.001) TCGA-3A-A9I5-01 22 51064677 51064677 C T ARSA Missense_Mutation p.G295D 0.05 deleterious(0) probably_damaging(1) TCGA-3A-A9I5-01 3 138724864 138724864 G A PRR23A Missense_Mutation p.P83S 0.06 tolerated(0.1) benign(0.011) TCGA-3A-A9I5-01 3 142151540 142151540 G A XRN1 Nonsense_Mutation p.R91* 0.11 TCGA-3A-A9I5-01 3 184294634 184294634 G T EPHB3 Silent p.V339V 0.13 TCGA-3A-A9I5-01 3 77684144 77684144 G A ROBO2 Missense_Mutation p.R1311Q 0.21 tolerated_low_confidence(0.38) benign(0.238) TCGA-3A-A9I5-01 4 110909769 110909769 G A EGF Missense_Mutation p.V880M 0.19 tolerated(0.1) possibly_damaging(0.756) TCGA-3A-A9I5-01 4 185339858 185339858 C A IRF2 Missense_Mutation p.K64N 0.18 deleterious(0) probably_damaging(0.996) TCGA-3A-A9I5-01 6 117593645 117593645 C G VGLL2 Silent p.S314S 0.13 TCGA-3A-A9I5-01 6 150004721 150004721 G A LATS1 Missense_Mutation p.R502C 0.14 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-3A-A9I5-01 6 24654677 24654682 GGAAAA - TDP2 In_Frame_Del p.F199_P200del 0.11 TCGA-3A-A9I5-01 6 56469950 56469950 G A DST Intron 0.12 TCGA-3A-A9I5-01 6 56469951 56469951 A T DST Intron 0.12 TCGA-3A-A9I5-01 6 62687982 62687983 - T KHDRBS2 Frame_Shift_Ins p.F158Ifs*5 0.13 TCGA-3A-A9I5-01 7 100679767 100679767 T - MUC17 Frame_Shift_Del p.P1691Lfs*2 0.13 TCGA-3A-A9I5-01 7 148984847 148984847 G T ZNF783 3'Flank 0.15 TCGA-3A-A9I5-01 7 32909811 32909811 G T KBTBD2 Missense_Mutation p.L340I 0.15 tolerated(0.38) benign(0.002) TCGA-3A-A9I5-01 9 86498835 86498835 T A KIF27 Nonsense_Mutation p.K780* 0.04 TCGA-3A-A9I7-01 11 65554913 65554913 C G OVOL1 Silent p.P23P 0.11 TCGA-3A-A9I7-01 12 101603630 101603630 C A SLC5A8 5'UTR 0.09 TCGA-3A-A9I7-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.07 deleterious(0) benign(0.361) TCGA-3A-A9I7-01 12 28116383 28116383 C T PTHLH Missense_Mutation p.R141Q 0.06 deleterious(0) probably_damaging(0.997) TCGA-3A-A9I7-01 12 368930 368930 G C SLC6A13 Intron 0.09 TCGA-3A-A9I7-01 17 3181227 3181227 T G OR3A2 3'UTR 0.06 TCGA-3A-A9I7-01 17 78923328 78923328 C G RPTOR Missense_Mutation p.D1117E 0.05 tolerated(0.36) possibly_damaging(0.897) TCGA-3A-A9I7-01 18 10485496 10485496 A G APCDD1 Missense_Mutation p.Y271C 0.05 deleterious(0.03) possibly_damaging(0.749) TCGA-3A-A9I7-01 18 21110072 21110072 C T C18orf8 Silent p.H525H 0.02 TCGA-3A-A9I7-01 18 22806967 22806967 G A ZNF521 Silent p.S305S 0.03 TCGA-3A-A9I7-01 19 38958285 38958285 C T RYR1 Missense_Mutation p.R1072C 0.04 probably_damaging(0.999) TCGA-3A-A9I7-01 19 4217177 4217177 G A ANKRD24 Missense_Mutation p.A674T 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.483) TCGA-3A-A9I7-01 19 50861863 50861863 G A NAPSA Missense_Mutation p.R404C 0.05 deleterious(0.01) possibly_damaging(0.513) TCGA-3A-A9I7-01 1 34099024 34099024 G T CSMD2 Missense_Mutation p.T1693K 0.33 deleterious(0) probably_damaging(0.959) TCGA-3A-A9I7-01 2 242189325 242189325 G A HDLBP Silent p.I481I 0.06 TCGA-3A-A9I7-01 4 169206628 169206628 G C DDX60 Missense_Mutation p.P454R 0.03 deleterious(0.01) possibly_damaging(0.655) TCGA-3A-A9I7-01 5 19612555 19612555 G A CDH18 Missense_Mutation p.R267C 0.03 deleterious(0.02) possibly_damaging(0.792) TCGA-3A-A9I7-01 6 31923047 31923047 G A NELFE Silent p.P105P 0.04 TCGA-3A-A9I7-01 6 43307934 43307934 G C ZNF318 Missense_Mutation p.P1268A 0.02 benign(0.009) TCGA-3A-A9I7-01 7 140301961 140301961 C T DENND2A Silent p.T79T 0.06 TCGA-3A-A9I7-01 7 4917411 4917411 G A RADIL Silent p.G120G 0.05 TCGA-3A-A9I7-01 8 1841800 1841800 G A ARHGEF10 Silent p.K416K 0.06 TCGA-3A-A9I7-01 8 38110300 38110300 A G DDHD2 Missense_Mutation p.M560V 0.08 tolerated(1) possibly_damaging(0.734) TCGA-3A-A9I9-01 10 105158241 105158241 G C PDCD11 Missense_Mutation p.E20Q 0.16 tolerated(0.37) benign(0.197) TCGA-3A-A9I9-01 10 129903384 129903384 C G MKI67 Missense_Mutation p.K2240N 0.16 deleterious(0.04) probably_damaging(0.99) TCGA-3A-A9I9-01 10 24908567 24908567 G A ARHGAP21 Missense_Mutation p.H753Y 0.13 deleterious(0) probably_damaging(0.953) TCGA-3A-A9I9-01 10 42832963 42832963 A G RP11-313J2.1 RNA 0.14 TCGA-3A-A9I9-01 10 75407582 75407582 G C SYNPO2L Missense_Mutation p.R610G 0.16 deleterious(0) probably_damaging(0.994) TCGA-3A-A9I9-01 11 121028674 121028674 G A TECTA Missense_Mutation p.R1477H 0.14 tolerated(0.07) probably_damaging(0.998) TCGA-3A-A9I9-01 11 122667631 122667631 G A UBASH3B Missense_Mutation p.R416H 0.20 deleterious(0) possibly_damaging(0.792) TCGA-3A-A9I9-01 11 48238701 48238701 G A OR4B1 Missense_Mutation p.V114M 0.15 deleterious(0.03) benign(0.094) TCGA-3A-A9I9-01 11 57311123 57311123 G A SMTNL1 Silent p.Q271Q 0.15 TCGA-3A-A9I9-01 11 61508664 61508664 G A DAGLA Missense_Mutation p.A672T 0.14 deleterious(0.02) benign(0.203) TCGA-3A-A9I9-01 11 8941166 8941166 T C AKIP1 3'UTR 0.20 TCGA-3A-A9I9-01 12 133240667 133240667 C G POLE Missense_Mutation p.V877L 0.15 tolerated(0.09) benign(0.082) TCGA-3A-A9I9-01 12 133501918 133501918 A G ZNF605 3'UTR 0.23 TCGA-3A-A9I9-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.11 deleterious(0.03) benign(0.376) TCGA-3A-A9I9-01 12 4554454 4554454 C T FGF6 Missense_Mutation p.G95S 0.17 deleterious(0) probably_damaging(1) TCGA-3A-A9I9-01 12 6579809 6579809 G A VAMP1 5'UTR 0.19 TCGA-3A-A9I9-01 12 69158752 69158752 T A SLC35E3 3'UTR 0.05 TCGA-3A-A9I9-01 12 7172426 7172426 C A C1S Missense_Mutation p.F180L 0.14 deleterious(0) probably_damaging(0.926) TCGA-3A-A9I9-01 12 7254607 7254607 C T C1RL Missense_Mutation p.R126K 0.16 tolerated(0.61) benign(0.01) TCGA-3A-A9I9-01 13 103301346 103301346 T A TPP2 Silent p.L906L 0.12 TCGA-3A-A9I9-01 13 45768730 45768730 C T KCTD4 5'UTR 0.20 TCGA-3A-A9I9-01 14 100374050 100374050 G C EML1 Missense_Mutation p.E381Q 0.15 tolerated(0.27) possibly_damaging(0.697) TCGA-3A-A9I9-01 14 39818172 39818172 C G CTAGE5 Missense_Mutation p.P752A 0.13 tolerated(0.05) benign(0.041) TCGA-3A-A9I9-01 14 68118129 68118129 A C VTI1B Silent p.V224V 0.14 TCGA-3A-A9I9-01 14 71200060 71200060 C G MAP3K9 Splice_Site p.X690_splice 0.13 TCGA-3A-A9I9-01 14 77857589 77857589 G A SAMD15 3'UTR 0.10 TCGA-3A-A9I9-01 15 24922695 24922695 G A NPAP1 Missense_Mutation p.A561T 0.14 tolerated(0.89) benign(0.001) TCGA-3A-A9I9-01 15 39876541 39876541 C T THBS1 Missense_Mutation p.P315L 0.16 deleterious(0.05) benign(0.004) TCGA-3A-A9I9-01 15 59359283 59359283 G C RNF111 Splice_Site p.X562_splice 0.16 TCGA-3A-A9I9-01 15 90150053 90150053 C T TICRR Nonsense_Mutation p.Q907* 0.07 TCGA-3A-A9I9-01 16 313364 313364 A T ITFG3 Missense_Mutation p.T359S 0.10 tolerated(0.66) benign(0.407) TCGA-3A-A9I9-01 16 48248799 48248799 G A ABCC11 Missense_Mutation p.A414V 0.13 tolerated(0.08) benign(0.04) TCGA-3A-A9I9-01 16 67166803 67166803 C T C16orf70 Missense_Mutation p.P147S 0.13 tolerated(0.63) possibly_damaging(0.756) TCGA-3A-A9I9-01 16 67576517 67576517 C G FAM65A Missense_Mutation p.H630D 0.10 deleterious(0.02) benign(0.088) TCGA-3A-A9I9-01 16 72138480 72138480 C T DHX38 Silent p.F702F 0.14 TCGA-3A-A9I9-01 16 80718735 80718735 G A CDYL2 Missense_Mutation p.R106W 0.18 deleterious(0.03) benign(0.01) TCGA-3A-A9I9-01 16 81142229 81142229 C A RNU6-1191P 5'Flank 0.18 TCGA-3A-A9I9-01 17 1690713 1690713 C A SMYD4 Intron 0.22 TCGA-3A-A9I9-01 17 26971150 26971150 G C KIAA0100 Missense_Mutation p.L42V 0.14 tolerated(0.18) possibly_damaging(0.866) TCGA-3A-A9I9-01 17 45206848 45206848 T A CDC27 Missense_Mutation p.T697S 0.03 deleterious(0.01) probably_damaging(0.996) TCGA-3A-A9I9-01 17 45916852 45916852 G A SCRN2 Silent p.L172L 0.14 TCGA-3A-A9I9-01 17 47301945 47301945 C A PHOSPHO1 Missense_Mutation p.G181V 0.20 deleterious(0) probably_damaging(1) TCGA-3A-A9I9-01 17 48917574 48917580 CAGGCTG - WFIKKN2 Frame_Shift_Del p.A310Pfs*18 0.11 TCGA-3A-A9I9-01 17 49272667 49272667 C T MBTD1 Missense_Mutation p.G427E 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-3A-A9I9-01 17 62049079 62049079 C A SCN4A Intron 0.20 TCGA-3A-A9I9-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.12 deleterious(0) probably_damaging(1) TCGA-3A-A9I9-01 17 78324169 78324169 G A RNF213 Missense_Mutation p.R3386H 0.06 benign(0) TCGA-3A-A9I9-01 17 79866869 79866869 C T PCYT2 Missense_Mutation p.E75K 0.14 deleterious(0.02) possibly_damaging(0.833) TCGA-3A-A9I9-01 17 8398511 8398511 C A MYH10 Missense_Mutation p.G1334C 0.05 benign(0.014) TCGA-3A-A9I9-01 18 3879577 3879577 G A DLGAP1 Silent p.N164N 0.20 TCGA-3A-A9I9-01 19 18555403 18555403 A T ELL 3'UTR 0.20 TCGA-3A-A9I9-01 19 36220898 36220898 A G KMT2B Missense_Mutation p.T1650A 0.12 probably_damaging(0.973) TCGA-3A-A9I9-01 19 40408807 40408807 G A FCGBP Silent p.N1344N 0.14 TCGA-3A-A9I9-01 19 42848986 42848986 G C MEGF8 Splice_Site p.X699_splice 0.08 TCGA-3A-A9I9-01 19 52709296 52709296 G C PPP2R1A Missense_Mutation p.E84Q 0.04 tolerated(0.11) benign(0.003) TCGA-3A-A9I9-01 19 7673099 7673099 G A CAMSAP3 Missense_Mutation p.A264T 0.04 deleterious(0) possibly_damaging(0.699) TCGA-3A-A9I9-01 19 8190867 8190867 A G FBN3 Silent p.C880C 0.13 TCGA-3A-A9I9-01 19 9086442 9086457 GCTGGACTCTGTCCTT - MUC16 Frame_Shift_Del p.R1787Qfs*36 0.15 TCGA-3A-A9I9-01 19 9921950 9921950 G A FBXL12 Silent p.L201L 0.15 TCGA-3A-A9I9-01 1 109477302 109477302 G A CLCC1 Missense_Mutation p.P549L 0.14 tolerated_low_confidence(0.17) benign(0.181) TCGA-3A-A9I9-01 1 118477263 118477263 G C WDR3 Missense_Mutation p.L113F 0.06 deleterious(0.01) probably_damaging(0.938) TCGA-3A-A9I9-01 1 155188655 155188655 G C GBAP1 RNA 0.12 TCGA-3A-A9I9-01 1 155531886 155531886 G A ASH1L Intron 0.16 TCGA-3A-A9I9-01 1 196695962 196695962 T C CFH Missense_Mutation p.Y710H 0.15 tolerated(1) benign(0.002) TCGA-3A-A9I9-01 1 209799171 209799171 C G LAMB3 Missense_Mutation p.G600R 0.14 tolerated(0.5) benign(0.005) TCGA-3A-A9I9-01 1 228562337 228562337 A G OBSCN Missense_Mutation p.K8473R 0.13 probably_damaging(0.979) TCGA-3A-A9I9-01 1 247614391 247614391 A G OR2B11 Silent p.N298N 0.17 TCGA-3A-A9I9-01 1 31409636 31409636 C T PUM1 Missense_Mutation p.A1097T 0.05 tolerated(0.07) benign(0.026) TCGA-3A-A9I9-01 1 36752630 36752630 C T THRAP3 Missense_Mutation p.P267S 0.18 tolerated(0.12) probably_damaging(0.986) TCGA-3A-A9I9-01 1 36752631 36752631 C T THRAP3 Missense_Mutation p.P267L 0.18 deleterious(0.01) probably_damaging(0.991) TCGA-3A-A9I9-01 1 53459476 53459476 C G SCP2 Intron 0.18 TCGA-3A-A9I9-01 20 36147320 36147320 C G BLCAP Missense_Mutation p.G86A 0.14 tolerated_low_confidence(0.11) benign(0.104) TCGA-3A-A9I9-01 20 43374752 43374752 C A KCNK15 Silent p.L67L 0.28 TCGA-3A-A9I9-01 20 61512310 61512310 G T DIDO1 Silent p.G1666G 0.25 TCGA-3A-A9I9-01 21 40571514 40571514 T A BRWD1 Missense_Mutation p.N1610Y 0.04 deleterious(0.01) probably_damaging(0.998) TCGA-3A-A9I9-01 21 46047922 46047922 C T KRTAP10-9 Silent p.R278R 0.17 TCGA-3A-A9I9-01 22 18769259 18769259 A C GGT3P Intron 0.04 TCGA-3A-A9I9-01 22 36962506 36962506 C A CACNG2 Silent p.L110L 0.15 TCGA-3A-A9I9-01 2 116510788 116510788 C A DPP10 Missense_Mutation p.T334N 0.12 deleterious(0.01) benign(0.088) TCGA-3A-A9I9-01 2 159077147 159077147 T A CCDC148 Nonsense_Mutation p.K444* 0.12 TCGA-3A-A9I9-01 2 179638079 179638079 C T TTN Missense_Mutation p.G2538S 0.15 TCGA-3A-A9I9-01 2 182347132 182347132 G C ITGA4 Missense_Mutation p.E296Q 0.04 tolerated(0.39) probably_damaging(0.999) TCGA-3A-A9I9-01 2 210650909 210650909 T C UNC80 Silent p.I240I 0.06 TCGA-3A-A9I9-01 2 219251895 219251895 G C SLC11A1 Missense_Mutation p.W171C 0.12 deleterious(0) probably_damaging(1) TCGA-3A-A9I9-01 2 219251897 219251897 G T SLC11A1 Missense_Mutation p.G172V 0.11 tolerated(0.08) probably_damaging(0.997) TCGA-3A-A9I9-01 2 227875104 227875104 C A COL4A4 Missense_Mutation p.G1483C 0.13 unknown(0) TCGA-3A-A9I9-01 2 242572368 242572368 C T THAP4 Missense_Mutation p.V402I 0.07 tolerated(0.1) benign(0.002) TCGA-3A-A9I9-01 2 27261588 27261588 G C TMEM214 Missense_Mutation p.E438Q 0.08 deleterious(0.01) probably_damaging(0.982) TCGA-3A-A9I9-01 2 46987120 46987120 T C SOCS5 Missense_Mutation p.L484P 0.19 deleterious(0) probably_damaging(0.969) TCGA-3A-A9I9-01 2 55795477 55795477 C T SMEK2 Silent p.R596R 0.16 TCGA-3A-A9I9-01 2 98280369 98280369 G A ACTR1B 5'UTR 0.10 TCGA-3A-A9I9-01 3 113320452 113320452 G C SIDT1 Missense_Mutation p.A355P 0.04 tolerated(0.29) benign(0.008) TCGA-3A-A9I9-01 3 113595066 113595066 C T GRAMD1C Missense_Mutation p.L140F 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-3A-A9I9-01 3 119121031 119121031 C T ARHGAP31 Missense_Mutation p.R478C 0.14 deleterious(0) possibly_damaging(0.874) TCGA-3A-A9I9-01 3 120321028 120321028 T G NDUFB4 Intron 0.16 TCGA-3A-A9I9-01 3 128631665 128631665 C T ACAD9 3'UTR 0.16 TCGA-3A-A9I9-01 3 15116060 15116060 C T ZFYVE20 Silent p.R528R 0.24 TCGA-3A-A9I9-01 3 154032888 154032888 A C DHX36 Missense_Mutation p.L184V 0.17 deleterious(0) benign(0.081) TCGA-3A-A9I9-01 3 185783686 185783686 G C ETV5 Missense_Mutation p.P276A 0.05 tolerated(0.11) possibly_damaging(0.78) TCGA-3A-A9I9-01 3 38671831 38671831 C G SCN5A Silent p.R121R 0.13 TCGA-3A-A9I9-01 3 40529155 40529155 C T ZNF619 Missense_Mutation p.S425L 0.17 deleterious(0.04) benign(0.256) TCGA-3A-A9I9-01 3 54962035 54962035 T A LRTM1 5'UTR 0.14 TCGA-3A-A9I9-01 3 54962052 54962052 G A LRTM1 5'UTR 0.15 TCGA-3A-A9I9-01 4 100784951 100784951 G C DAPP1 Missense_Mutation p.D209H 0.17 deleterious(0) probably_damaging(0.983) TCGA-3A-A9I9-01 4 17839269 17839269 G C NCAPG Missense_Mutation p.E771Q 0.15 deleterious(0.01) probably_damaging(0.985) TCGA-3A-A9I9-01 4 187524664 187524664 A G FAT1 Silent p.G3672G 0.15 TCGA-3A-A9I9-01 4 38933133 38933133 C T FAM114A1 Missense_Mutation p.A408V 0.04 tolerated(0.13) benign(0.006) TCGA-3A-A9I9-01 4 678335 678335 G C MFSD7 Missense_Mutation p.I259M 0.14 deleterious(0) possibly_damaging(0.526) TCGA-3A-A9I9-01 4 74283893 74283893 T C ALB Missense_Mutation p.V506A 0.14 tolerated(1) benign(0.034) TCGA-3A-A9I9-01 4 88727301 88727301 G T IBSP Nonsense_Mutation p.G71* 0.15 TCGA-3A-A9I9-01 4 89183681 89183681 C G PPM1K 3'UTR 0.16 TCGA-3A-A9I9-01 5 140475321 140475321 C T PCDHB2 Missense_Mutation p.T316I 0.13 deleterious_low_confidence(0.03) benign(0.049) TCGA-3A-A9I9-01 5 140869580 140869580 G A PCDHGC5 Missense_Mutation p.G258D 0.15 deleterious(0.04) probably_damaging(1) TCGA-3A-A9I9-01 5 149216585 149216585 C G PPARGC1B Missense_Mutation p.S856C 0.13 deleterious(0.01) benign(0.093) TCGA-3A-A9I9-01 5 174869707 174869707 C G DRD1 Missense_Mutation p.E132D 0.16 deleterious(0.01) benign(0.162) TCGA-3A-A9I9-01 5 76646926 76646926 G A PDE8B Missense_Mutation p.G352R 0.12 deleterious(0) probably_damaging(1) TCGA-3A-A9I9-01 6 43612810 43612810 G A RSPH9 5'UTR 0.15 TCGA-3A-A9I9-01 6 44248064 44248064 G A TCTE1 Missense_Mutation p.R454C 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-3A-A9I9-01 6 7231195 7231195 G A RREB1 Missense_Mutation p.E955K 0.17 tolerated(0.11) benign(0.141) TCGA-3A-A9I9-01 7 100421350 100421350 C T EPHB4 Silent p.E109E 0.11 TCGA-3A-A9I9-01 7 103234836 103234836 C T RELN Missense_Mutation p.D1215N 0.13 deleterious(0) probably_damaging(0.995) TCGA-3A-A9I9-01 7 149171720 149171720 G A ZNF746 Missense_Mutation p.R565W 0.08 deleterious(0) probably_damaging(0.988) TCGA-3A-A9I9-01 7 47842826 47842826 G T PKD1L1 Silent p.P2648P 0.11 TCGA-3A-A9I9-01 8 124348628 124348628 C G ATAD2 Missense_Mutation p.D1066H 0.14 deleterious(0) possibly_damaging(0.797) TCGA-3A-A9I9-01 8 56675075 56675075 G A TMEM68 Intron 0.17 TCGA-3A-A9I9-01 8 71082538 71082538 A G NCOA2 Missense_Mutation p.L147P 0.14 deleterious(0) probably_damaging(1) TCGA-3A-A9I9-01 8 99019798 99019798 C T MATN2 Silent p.H514H 0.17 TCGA-3A-A9I9-01 9 140330612 140330612 G T ENTPD8 Silent p.L301L 0.15 TCGA-3A-A9I9-01 9 34613679 34613679 C G DCTN3 3'UTR 0.23 TCGA-3A-A9I9-01 9 34613680 34613680 C A DCTN3 3'UTR 0.24 TCGA-3A-A9I9-01 9 35700280 35700280 C T TLN1 Missense_Mutation p.V2190I 0.04 tolerated(0.07) possibly_damaging(0.867) TCGA-3A-A9I9-01 9 71951186 71951186 G T FAM189A2 Splice_Site p.X4_splice 0.14 TCGA-3A-A9I9-01 X 103349565 103349565 C T SLC25A53 Missense_Mutation p.V126M 0.07 tolerated(0.13) benign(0.118) TCGA-3A-A9I9-01 X 150345311 150345311 G A GPR50 Missense_Mutation p.V40I 0.22 tolerated(0.21) benign(0.014) TCGA-3A-A9I9-01 X 47272834 47272834 A T ZNF157 Missense_Mutation p.K454N 0.24 tolerated(0.07) probably_damaging(0.994) TCGA-3A-A9I9-01 X 47498346 47498346 G A ELK1 Missense_Mutation p.P201L 0.42 tolerated(0.05) probably_damaging(0.998) TCGA-3A-A9I9-01 X 50350791 50350791 T C SHROOM4 Silent p.A1117A 0.13 TCGA-3A-A9I9-01 X 54841940 54841940 C A MAGED2 Missense_Mutation p.T549N 0.29 tolerated(0.06) unknown(0) TCGA-3A-A9IB-01 10 95719691 95719692 AA - PIPSL RNA 0.21 TCGA-3A-A9IB-01 11 26743035 26743035 C T SLC5A12 Missense_Mutation p.R76H 0.18 deleterious(0.01) probably_damaging(0.944) TCGA-3A-A9IB-01 11 5322242 5322242 G A HBE1 Intron 0.05 TCGA-3A-A9IB-01 11 63449189 63449189 C T RTN3 Silent p.G27G 0.20 TCGA-3A-A9IB-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.20 deleterious(0) benign(0.361) TCGA-3A-A9IB-01 12 52760836 52760836 G A KRT85 Silent p.C118C 0.17 TCGA-3A-A9IB-01 12 57594247 57594247 G A LRP1 Missense_Mutation p.C3346Y 0.24 probably_damaging(0.985) TCGA-3A-A9IB-01 13 109779895 109779895 G A MYO16 Missense_Mutation p.E1328K 0.13 deleterious(0.04) benign(0.426) TCGA-3A-A9IB-01 15 48707785 48707785 C T FBN1 Missense_Mutation p.E2667K 0.26 benign(0.419) TCGA-3A-A9IB-01 16 50664178 50664178 C T NKD1 Missense_Mutation p.R182W 0.08 deleterious(0.01) probably_damaging(1) TCGA-3A-A9IB-01 16 72163043 72163043 C G PMFBP1 Missense_Mutation p.K624N 0.25 deleterious(0.01) possibly_damaging(0.628) TCGA-3A-A9IB-01 16 89842201 89842201 G C FANCA Missense_Mutation p.L617V 0.11 tolerated(0.1) benign(0.364) TCGA-3A-A9IB-01 17 27869675 27869675 G C TAOK1 Missense_Mutation p.E881Q 0.15 deleterious(0.03) benign(0.03) TCGA-3A-A9IB-01 17 32953589 32953589 C T TMEM132E Missense_Mutation p.R171W 0.18 deleterious(0.05) probably_damaging(0.995) TCGA-3A-A9IB-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.29 deleterious(0) probably_damaging(1) TCGA-3A-A9IB-01 18 21098885 21098887 CAT - C18orf8 In_Frame_Del p.H230del 0.38 TCGA-3A-A9IB-01 19 52090881 52090881 A G ZNF175 Missense_Mutation p.T433A 0.19 tolerated(0.34) benign(0.172) TCGA-3A-A9IB-01 19 52919334 52919334 G C ZNF528 Missense_Mutation p.G410A 0.17 deleterious(0) benign(0.171) TCGA-3A-A9IB-01 1 110172959 110172959 G A AMPD2 Silent p.P750P 0.19 TCGA-3A-A9IB-01 1 12887241 12887241 G A PRAMEF11 Missense_Mutation p.R206C 0.18 deleterious(0.02) possibly_damaging(0.857) TCGA-3A-A9IB-01 1 168066276 168066276 G A GPR161 Missense_Mutation p.A210V 0.17 tolerated(0.27) benign(0.004) TCGA-3A-A9IB-01 1 226032215 226032215 G A EPHX1 Missense_Mutation p.D353N 0.18 deleterious(0.04) possibly_damaging(0.871) TCGA-3A-A9IB-01 1 67303362 67303362 T G WDR78 Intron 0.25 TCGA-3A-A9IB-01 20 37356232 37356232 C T SLC32A1 Silent p.D176D 0.20 TCGA-3A-A9IB-01 20 55966783 55966783 C A RBM38 Nonsense_Mutation p.S49* 0.20 TCGA-3A-A9IB-01 21 45970839 45970839 C - KRTAP10-2 Frame_Shift_Del p.C168Sfs*178 0.14 TCGA-3A-A9IB-01 22 35463185 35463185 G A ISX Silent p.A35A 0.17 TCGA-3A-A9IB-01 2 111425242 111425242 C T BUB1 Missense_Mutation p.V221M 0.16 tolerated(0.06) possibly_damaging(0.553) TCGA-3A-A9IB-01 2 160738720 160738720 C A LY75-CD302 Silent p.A387A 0.16 TCGA-3A-A9IB-01 2 165950907 165950907 G C SCN3A Missense_Mutation p.Q1505E 0.15 deleterious(0) benign(0.012) TCGA-3A-A9IB-01 2 33487847 33487847 C T LTBP1 Missense_Mutation p.S826F 0.12 deleterious(0) probably_damaging(0.954) TCGA-3A-A9IB-01 2 96690527 96690527 A G GPAT2 Silent p.H474H 0.03 TCGA-3A-A9IB-01 2 99012788 99012788 C G CNGA3 Missense_Mutation p.F385L 0.24 tolerated(0.15) probably_damaging(0.93) TCGA-3A-A9IB-01 3 195027329 195027329 C T ACAP2 Missense_Mutation p.A343T 0.09 deleterious(0) probably_damaging(0.998) TCGA-3A-A9IB-01 3 197562598 197562598 G C LRCH3 Missense_Mutation p.E386Q 0.08 deleterious(0.03) possibly_damaging(0.905) TCGA-3A-A9IB-01 4 44450555 44450555 C T KCTD8 5'UTR 0.09 TCGA-3A-A9IB-01 5 140554443 140554443 C T PCDHB7 Missense_Mutation p.A676V 0.11 tolerated_low_confidence(0.87) benign(0.005) TCGA-3A-A9IB-01 5 169446049 169446049 C A DOCK2 Silent p.A1106A 0.16 TCGA-3A-A9IB-01 5 176003158 176003158 T A CDHR2 Missense_Mutation p.L389H 0.15 deleterious(0) probably_damaging(0.966) TCGA-3A-A9IB-01 6 159646578 159646578 T C FNDC1 Missense_Mutation p.V299A 0.21 deleterious(0) unknown(0) TCGA-3A-A9IB-01 6 17669530 17669530 C T NUP153 Silent p.L336L 0.19 TCGA-3A-A9IB-01 6 74115486 74115486 C T DDX43 Silent p.D245D 0.19 TCGA-3A-A9IB-01 6 80720617 80720617 A T TTK Missense_Mutation p.N186Y 0.12 deleterious(0) probably_damaging(0.997) TCGA-3A-A9IB-01 7 107546792 107546792 A C DLD Silent p.A221A 0.06 TCGA-3A-A9IB-01 8 102585988 102585988 A G GRHL2 Missense_Mutation p.Y276C 0.48 deleterious(0) probably_damaging(0.995) TCGA-3A-A9IB-01 8 23054679 23054701 CAGCCTCCTCCTCTGAGACCCTT - TNFRSF10A Frame_Shift_Del p.E344Afs*8 0.10 TCGA-3A-A9IB-01 9 21974727 21974744 CCTCCAGCAGCGCCCGCA - CDKN2A In_Frame_Del p.V28_E33del 0.49 TCGA-3A-A9IB-01 9 84533048 84533048 C T SPATA31D5P RNA 0.59 TCGA-3A-A9IB-01 X 83319323 83319323 G A RPS6KA6 Nonsense_Mutation p.R734* 0.24 TCGA-3A-A9IC-01 11 45246046 45246046 G A PRDM11 Missense_Mutation p.A341T 0.18 tolerated_low_confidence(0.22) benign(0.005) TCGA-3A-A9IC-01 11 55655602 55655602 T A TRIM51 Missense_Mutation p.L201Q 0.14 deleterious(0) probably_damaging(0.992) TCGA-3A-A9IC-01 11 64329557 64329557 C A SLC22A11 Missense_Mutation p.F193L 0.20 deleterious(0.03) benign(0.319) TCGA-3A-A9IC-01 11 70281225 70281225 G A CTTN Missense_Mutation p.R500H 0.03 tolerated(0.06) probably_damaging(0.999) TCGA-3A-A9IC-01 11 75562938 75562938 G A UVRAG Missense_Mutation p.R43Q 0.04 deleterious(0) probably_damaging(0.999) TCGA-3A-A9IC-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.18 deleterious(0.03) benign(0.376) TCGA-3A-A9IC-01 13 48986341 48986341 C T LPAR6 Silent p.R73R 0.22 TCGA-3A-A9IC-01 13 99567729 99567729 T C DOCK9 Missense_Mutation p.E249G 0.04 deleterious(0.01) probably_damaging(1) TCGA-3A-A9IC-01 14 50044478 50044478 A T RPS29 3'UTR 0.05 TCGA-3A-A9IC-01 15 25940081 25940081 G A ATP10A Silent p.F991F 0.15 TCGA-3A-A9IC-01 15 43785347 43785347 G A TP53BP1 5'UTR 0.08 TCGA-3A-A9IC-01 15 50152223 50152223 C T ATP8B4 3'UTR 0.18 TCGA-3A-A9IC-01 16 1306874 1306874 G A TPSD1 Missense_Mutation p.V111I 0.22 tolerated(0.14) benign(0.126) TCGA-3A-A9IC-01 16 31766391 31766391 C A ZNF720 Intron 0.16 TCGA-3A-A9IC-01 16 55730216 55730216 C T SLC6A2 Silent p.F409F 0.19 TCGA-3A-A9IC-01 17 61611489 61611489 C T KCNH6 Silent p.I306I 0.20 TCGA-3A-A9IC-01 17 7579321 7579322 CA - TP53 Frame_Shift_Del p.V122Dfs*26 0.17 TCGA-3A-A9IC-01 18 61562529 61562529 C A SERPINB2 Missense_Mutation p.A67E 0.17 tolerated(1) benign(0.001) TCGA-3A-A9IC-01 18 7567856 7567856 C A PTPRM Missense_Mutation p.L14I 0.14 tolerated_low_confidence(0.36) unknown(0) TCGA-3A-A9IC-01 19 32845207 32845207 C T ZNF507 Nonsense_Mutation p.R491* 0.24 TCGA-3A-A9IC-01 19 35175765 35175765 C T ZNF302 Missense_Mutation p.H275Y 0.27 deleterious(0) probably_damaging(1) TCGA-3A-A9IC-01 19 58384887 58384887 C T ZNF814 Missense_Mutation p.R624H 0.19 deleterious(0.01) probably_damaging(0.912) TCGA-3A-A9IC-01 19 9063069 9063069 G A MUC16 Missense_Mutation p.T8126I 0.18 unknown(0) TCGA-3A-A9IC-01 19 9325236 9325236 G A OR7D4 Missense_Mutation p.S93F 0.20 deleterious(0.01) benign(0.043) TCGA-3A-A9IC-01 1 100964516 100964516 C T CDC14A Silent p.L485L 0.20 TCGA-3A-A9IC-01 1 108322082 108322082 T A VAV3 Silent p.T118T 0.16 TCGA-3A-A9IC-01 1 197070385 197070385 T C ASPM Missense_Mutation p.T2666A 0.30 tolerated(0.83) possibly_damaging(0.679) TCGA-3A-A9IC-01 1 79093845 79093845 C T IFI44L Missense_Mutation p.S82F 0.04 tolerated(0.19) probably_damaging(0.964) TCGA-3A-A9IC-01 2 1204809 1204809 G A SNTG2 Silent p.S204S 0.20 TCGA-3A-A9IC-01 2 190603299 190603299 A G ANKAR Silent p.V1197V 0.17 TCGA-3A-A9IC-01 2 190718684 190718684 A G PMS1 Missense_Mutation p.N281S 0.18 tolerated(0.77) benign(0.023) TCGA-3A-A9IC-01 3 30732964 30732964 A T TGFBR2 Missense_Mutation p.E551V 0.21 deleterious(0) probably_damaging(1) TCGA-3A-A9IC-01 3 69985877 69985877 C T MITF Intron 0.06 TCGA-3A-A9IC-01 4 183958909 183958909 C T FAM92A1P2 RNA 0.16 TCGA-3A-A9IC-01 5 140589361 140589361 T G PCDHB12 Missense_Mutation p.I294M 0.07 deleterious_low_confidence(0.03) possibly_damaging(0.612) TCGA-3A-A9IC-01 5 145838683 145838683 C T TCERG1 Silent p.A225A 0.30 TCGA-3A-A9IC-01 6 111693843 111693843 C G REV3L Missense_Mutation p.Q1905H 0.12 deleterious(0) probably_damaging(0.998) TCGA-3A-A9IC-01 6 152763329 152763329 C T SYNE1 Missense_Mutation p.A1297T 0.15 benign(0.001) TCGA-3A-A9IC-01 6 28327520 28327520 C T ZKSCAN3 Missense_Mutation p.R53C 0.16 tolerated(0.1) benign(0.284) TCGA-3A-A9IC-01 7 100687041 100687041 C T MUC17 Missense_Mutation p.T4115M 0.14 unknown(0) TCGA-3A-A9IC-01 7 154585899 154585899 G A DPP6 Missense_Mutation p.G416E 0.19 deleterious(0) probably_damaging(1) TCGA-3A-A9IC-01 7 73097630 73097630 C A DNAJC30 Missense_Mutation p.D42Y 0.16 deleterious(0.05) benign(0.026) TCGA-3A-A9IC-01 7 76889317 76889317 C A CCDC146 Intron 0.20 TCGA-3A-A9IC-01 8 131916097 131916097 C T ADCY8 Missense_Mutation p.R611Q 0.13 deleterious(0.04) benign(0.076) TCGA-3A-A9IC-01 X 101382205 101382205 C T TCEAL2 Missense_Mutation p.P135S 0.16 deleterious(0) possibly_damaging(0.876) TCGA-3A-A9IC-01 X 24712071 24712071 T A POLA1 5'UTR 0.28 TCGA-3A-A9IC-01 X 3002668 3002668 G T ARSF Missense_Mutation p.G264V 0.14 deleterious(0.01) possibly_damaging(0.544) TCGA-3A-A9IC-01 X 32503058 32503058 G A DMD Silent p.A927A 0.17 TCGA-3A-A9IC-01 X 55042077 55042077 G A ALAS2 Missense_Mutation p.R368W 0.03 deleterious(0) possibly_damaging(0.823) TCGA-3A-A9IH-01 10 134155718 134155718 C T LRRC27 Missense_Mutation p.H115Y 0.24 tolerated(0.07) probably_damaging(0.932) TCGA-3A-A9IH-01 11 1159032 1159032 G A MUC5AC Missense_Mutation p.A404T 0.21 tolerated(0.1) benign(0.054) TCGA-3A-A9IH-01 11 17415843 17415843 G A ABCC8 Silent p.D1505D 0.18 TCGA-3A-A9IH-01 11 28311787 28311787 C G METTL15 Missense_Mutation p.Q148E 0.28 tolerated(1) benign(0.004) TCGA-3A-A9IH-01 11 5142557 5142557 C A OR52A4 RNA 0.26 TCGA-3A-A9IH-01 11 74559225 74559225 G A XRRA1 Missense_Mutation p.R547C 0.24 tolerated(0.06) benign(0.002) TCGA-3A-A9IH-01 11 92538476 92538476 C T FAT3 Silent p.S3018S 0.09 TCGA-3A-A9IH-01 12 22063212 22063212 G A ABCC9 Missense_Mutation p.T400M 0.28 deleterious(0) probably_damaging(0.961) TCGA-3A-A9IH-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.16 deleterious(0.03) benign(0.376) TCGA-3A-A9IH-01 12 64377799 64377799 A G SRGAP1 Missense_Mutation p.Q47R 0.06 deleterious(0) possibly_damaging(0.867) TCGA-3A-A9IH-01 12 79679566 79679566 G A SYT1 Splice_Site p.X56_splice 0.16 TCGA-3A-A9IH-01 13 113140311 113140311 G A TUBGCP3 Missense_Mutation p.T907M 0.24 deleterious_low_confidence(0) benign(0.32) TCGA-3A-A9IH-01 13 32759255 32759255 A G FRY Missense_Mutation p.M1097V 0.20 deleterious(0.03) benign(0.155) TCGA-3A-A9IH-01 14 24429144 24429144 G C DHRS4 Missense_Mutation p.V114L 0.04 deleterious(0) benign(0.225) TCGA-3A-A9IH-01 15 26866539 26866539 T A GABRB3 Missense_Mutation p.K128M 0.28 deleterious(0) probably_damaging(0.992) TCGA-3A-A9IH-01 15 43851071 43851071 G C PPIP5K1 Missense_Mutation p.L1103V 0.16 deleterious_low_confidence(0) possibly_damaging(0.67) TCGA-3A-A9IH-01 15 56958635 56958635 T C ZNF280D Missense_Mutation p.Y651C 0.16 deleterious(0) probably_damaging(0.996) TCGA-3A-A9IH-01 15 63908760 63908760 C A HERC1 Missense_Mutation p.V4604L 0.23 probably_damaging(0.996) TCGA-3A-A9IH-01 16 20357449 20357449 G A UMOD Missense_Mutation p.T394M 0.17 tolerated(0.18) benign(0.082) TCGA-3A-A9IH-01 16 49672109 49672109 G A ZNF423 Silent p.H318H 0.27 TCGA-3A-A9IH-01 16 67397524 67397524 C G LRRC36 Silent p.P203P 0.04 TCGA-3A-A9IH-01 16 70902514 70902514 C T HYDIN Missense_Mutation p.V3757I 0.21 possibly_damaging(0.636) TCGA-3A-A9IH-01 16 84056458 84056458 G A SLC38A8 Missense_Mutation p.R243C 0.20 deleterious(0.01) possibly_damaging(0.893) TCGA-3A-A9IH-01 16 88752818 88752818 C A SNAI3 5'UTR 0.19 TCGA-3A-A9IH-01 17 10398336 10398336 G A MYH1 Missense_Mutation p.T1793M 0.33 deleterious(0.02) benign(0.399) TCGA-3A-A9IH-01 17 34074090 34074090 G A GAS2L2 Missense_Mutation p.R344C 0.31 tolerated(0.17) benign(0.001) TCGA-3A-A9IH-01 17 37099973 37099973 C T FBXO47 Silent p.Q270Q 0.21 TCGA-3A-A9IH-01 17 64770147 64770147 G A PRKCA Missense_Mutation p.A523T 0.18 deleterious(0) probably_damaging(0.989) TCGA-3A-A9IH-01 17 7578502 7578502 A T TP53 Missense_Mutation p.V143E 0.32 deleterious(0) probably_damaging(1) TCGA-3A-A9IH-01 17 76497216 76497216 G A DNAH17-AS1 3'UTR 0.23 TCGA-3A-A9IH-01 18 19429284 19429284 T C MIB1 Missense_Mutation p.S841P 0.14 deleterious(0.03) possibly_damaging(0.659) TCGA-3A-A9IH-01 18 48575093 48575093 C A SMAD4 Missense_Mutation p.A96D 0.19 deleterious(0) probably_damaging(0.969) TCGA-3A-A9IH-01 18 50450207 50450207 C T DCC Silent p.G276G 0.27 TCGA-3A-A9IH-01 19 1221313 1221314 - C STK11 Frame_Shift_Ins p.L282Afs*3 0.38 TCGA-3A-A9IH-01 19 37905084 37905084 A T ZNF569 Missense_Mutation p.L159H 0.15 tolerated(0.56) benign(0.072) TCGA-3A-A9IH-01 19 52091537 52091537 G A ZNF175 Silent p.S651S 0.21 TCGA-3A-A9IH-01 1 150722622 150722622 T G CTSS Missense_Mutation p.K218T 0.24 tolerated(0.5) benign(0.011) TCGA-3A-A9IH-01 1 154680305 154680305 G A KCNN3 3'UTR 0.23 TCGA-3A-A9IH-01 1 155449582 155449582 C T ASH1L Missense_Mutation p.A1027T 0.27 tolerated_low_confidence(0.1) probably_damaging(0.998) TCGA-3A-A9IH-01 1 247751947 247751947 G A OR2G2 Missense_Mutation p.A96T 0.16 tolerated(0.45) benign(0) TCGA-3A-A9IH-01 1 29314224 29314224 C A EPB41 Missense_Mutation p.S92Y 0.26 deleterious(0) probably_damaging(0.997) TCGA-3A-A9IH-01 22 26173732 26173732 G A MYO18B Silent p.V684V 0.14 TCGA-3A-A9IH-01 22 26173733 26173733 G C MYO18B Missense_Mutation p.D685H 0.14 deleterious(0.01) probably_damaging(0.952) TCGA-3A-A9IH-01 2 27327322 27327322 C A CGREF1 Intron 0.10 TCGA-3A-A9IH-01 2 32582309 32582309 G A BIRC6 Missense_Mutation p.R27Q 0.38 unknown(0) TCGA-3A-A9IH-01 2 85571747 85571747 T C RETSAT Missense_Mutation p.Y409C 0.21 deleterious(0) possibly_damaging(0.682) TCGA-3A-A9IH-01 2 89976340 89976340 C T IGKV2D-30 Missense_Mutation p.R71C 0.04 deleterious(0.04) benign(0.011) TCGA-3A-A9IH-01 3 183860631 183860631 G A EIF2B5 Silent p.E537E 0.18 TCGA-3A-A9IH-01 4 167713399 167713399 G A SPOCK3 Missense_Mutation p.R214W 0.23 deleterious(0) probably_damaging(0.995) TCGA-3A-A9IH-01 4 174253329 174253329 G A HMGB2 Missense_Mutation p.P178S 0.19 tolerated(0.06) benign(0.112) TCGA-3A-A9IH-01 6 166572035 166572035 G A T Missense_Mutation p.T359I 0.34 tolerated(0.06) benign(0.273) TCGA-3A-A9IH-01 6 32171920 32171920 G C NOTCH4 Missense_Mutation p.H1038D 0.35 deleterious(0.01) benign(0.355) TCGA-3A-A9IH-01 7 23458413 23458413 C T IGF2BP3 Silent p.P89P 0.13 TCGA-3A-A9IH-01 8 27661078 27661085 CACACACG - ESCO2 3'UTR 0.26 TCGA-3A-A9IH-01 8 53045690 53045690 C T ST18 Missense_Mutation p.G791R 0.23 deleterious(0) probably_damaging(0.998) TCGA-3A-A9IH-01 9 127651788 127651788 C T GOLGA1 Missense_Mutation p.E509K 0.17 tolerated(0.1) benign(0.019) TCGA-3A-A9IH-01 9 140160826 140160826 G C NELFB Missense_Mutation p.G348A 0.23 deleterious(0.02) possibly_damaging(0.489) TCGA-3A-A9IH-01 9 21971095 21971096 - CC CDKN2A Frame_Shift_Ins p.E88Gfs*59 0.33 TCGA-3A-A9IH-01 X 105183982 105183982 A G NRK Missense_Mutation p.K1307E 0.07 deleterious(0.04) possibly_damaging(0.879) TCGA-3A-A9IH-01 X 118370268 118370268 G A PGRMC1 5'UTR 0.19 TCGA-3A-A9IH-01 X 151870321 151870321 C G MAGEA6 3'UTR 0.20 TCGA-3A-A9IH-01 X 151870327 151870327 C G MAGEA6 3'UTR 0.20 TCGA-3A-A9IH-01 X 18192194 18192194 C G BEND2 Missense_Mutation p.R646P 0.23 tolerated(0.19) benign(0.098) TCGA-3A-A9IH-01 X 32591647 32591647 G A DMD Silent p.A604A 0.25 TCGA-3A-A9IH-01 X 57619818 57619818 G A ZXDB Missense_Mutation p.R446Q 0.25 deleterious(0) probably_damaging(0.998) TCGA-3A-A9IJ-01 10 101553424 101553424 G T ABCC2 Silent p.L150L 0.41 TCGA-3A-A9IJ-01 13 51956195 51956195 A G INTS6 Silent p.Y415Y 0.04 TCGA-3A-A9IJ-01 14 70826257 70826257 G A COX16 Silent p.L16L 0.05 TCGA-3A-A9IJ-01 15 26793020 26793020 T C GABRB3 Missense_Mutation p.I448V 0.04 tolerated(0.08) possibly_damaging(0.657) TCGA-3A-A9IJ-01 15 75013810 75013810 G A CYP1A1 Silent p.S329S 0.14 TCGA-3A-A9IJ-01 16 19067868 19067868 C T TMC7 Missense_Mutation p.P626S 0.40 tolerated(0.22) benign(0.007) TCGA-3A-A9IJ-01 16 84695471 84695471 G A KLHL36 Missense_Mutation p.R528H 0.10 tolerated(0.17) benign(0.042) TCGA-3A-A9IJ-01 17 1303373 1303373 G A YWHAE Missense_Mutation p.A11V 0.37 deleterious_low_confidence(0.02) benign(0.335) TCGA-3A-A9IJ-01 17 1563731 1563731 A G PRPF8 Missense_Mutation p.C1594R 0.39 deleterious(0.01) possibly_damaging(0.877) TCGA-3A-A9IJ-01 17 20108795 20108795 G T SPECC1 Missense_Mutation p.R478L 0.04 deleterious(0) possibly_damaging(0.454) TCGA-3A-A9IJ-01 17 38079367 38079367 C A ORMDL3 Silent p.V108V 0.04 TCGA-3A-A9IJ-01 1 98386497 98386497 G A DPYD 5'UTR 0.50 TCGA-3A-A9IJ-01 21 41719747 41719747 G T DSCAM Missense_Mutation p.L354I 0.03 tolerated(1) benign(0.006) TCGA-3A-A9IJ-01 3 77645801 77645801 T A ROBO2 Missense_Mutation p.D934E 0.12 tolerated(0.8) benign(0.417) TCGA-3A-A9IJ-01 4 102783700 102783700 C T BANK1 Silent p.F214F 0.10 TCGA-3A-A9IJ-01 5 55247756 55247756 C A IL6ST Splice_Site p.X567_splice 0.31 TCGA-3A-A9IJ-01 6 26156981 26156981 A T HIST1H1E Missense_Mutation p.K121N 0.10 deleterious(0.02) unknown(0) TCGA-3A-A9IJ-01 6 26156982 26156982 A T HIST1H1E Nonsense_Mutation p.K122* 0.10 TCGA-3A-A9IJ-01 9 131019147 131019147 T G GOLGA2 3'UTR 0.40 TCGA-3A-A9IL-01 10 103454189 103454189 C A FBXW4 Missense_Mutation p.R70L 0.14 tolerated(0.06) benign(0.002) TCGA-3A-A9IL-01 18 19371315 19371315 G A MIB1 Intron 0.27 TCGA-3A-A9IL-01 19 37210852 37210852 C G ZNF567 Missense_Mutation p.T378S 0.20 deleterious(0.04) probably_damaging(0.981) TCGA-3A-A9IL-01 1 203316552 203316552 T C FMOD Missense_Mutation p.N283D 0.07 tolerated(0.43) benign(0.001) TCGA-3A-A9IL-01 1 75037940 75037940 T A C1orf173 Missense_Mutation p.T1152S 0.37 deleterious(0.02) benign(0.046) TCGA-3A-A9IL-01 2 242447488 242447488 G A STK25 5'UTR 0.25 TCGA-3A-A9IL-01 2 73519782 73519782 A G EGR4 Silent p.I191I 0.35 TCGA-3A-A9IL-01 8 81599683 81599683 G A ZNF704 Silent p.S112S 0.16 TCGA-3A-A9IL-01 9 33989115 33989115 C T UBAP2 Missense_Mutation p.E100K 0.54 deleterious(0) probably_damaging(0.91) TCGA-3A-A9IL-01 9 84303163 84303163 G T TLE1 5'UTR 0.10 TCGA-3A-A9IL-01 X 153664299 153664299 C A ATP6AP1 3'UTR 0.23 TCGA-3A-A9IN-01 10 50532454 50532454 G T C10orf71 Nonsense_Mutation p.E622* 0.51 TCGA-3A-A9IN-01 10 88649818 88649818 G A BMPR1A Splice_Site p.X23_splice 0.46 TCGA-3A-A9IN-01 11 33123878 33123878 T G CSTF3 Missense_Mutation p.E224A 0.05 deleterious(0.01) benign(0.089) TCGA-3A-A9IN-01 11 64573203 64573205 CTC - MEN1 In_Frame_Del p.E368del 0.55 TCGA-3A-A9IN-01 12 31944965 31944965 C T H3F3C Missense_Mutation p.V46M 0.36 deleterious_low_confidence(0.01) benign(0.168) TCGA-3A-A9IN-01 13 39550704 39550704 T C STOML3 Missense_Mutation p.I68V 0.06 tolerated(0.13) probably_damaging(0.994) TCGA-3A-A9IN-01 15 73562521 73562521 C T NEO1 Nonsense_Mutation p.R889* 0.48 TCGA-3A-A9IN-01 16 863394 863394 A G PRR25 Missense_Mutation p.T248A 0.10 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-3A-A9IN-01 16 88745006 88745007 GC - SNAI3 Frame_Shift_Del p.S243Kfs*41 0.25 TCGA-3A-A9IN-01 17 3324717 3324717 T C OR3A3 Missense_Mutation p.F286L 0.30 tolerated(1) benign(0.075) TCGA-3A-A9IN-01 17 42849820 42849820 A T ADAM11 Nonsense_Mutation p.R222* 0.09 TCGA-3A-A9IN-01 17 79207196 79207196 G A ENTHD2 Intron 0.28 TCGA-3A-A9IN-01 18 2666233 2666233 T C SMCHD1 Splice_Site p.X88_splice 0.33 TCGA-3A-A9IN-01 18 43667402 43667402 G - ATP5A1 Frame_Shift_Del p.Q286Sfs*23 0.29 TCGA-3A-A9IN-01 18 60036335 60036335 C T TNFRSF11A Silent p.S395S 0.07 TCGA-3A-A9IN-01 18 72998635 72998635 C A TSHZ1 Missense_Mutation p.H380N 0.29 deleterious(0) probably_damaging(1) TCGA-3A-A9IN-01 19 17648272 17648272 T G FAM129C Missense_Mutation p.L203R 0.35 deleterious(0) probably_damaging(0.986) TCGA-3A-A9IN-01 19 23926745 23926745 C A ZNF681 Missense_Mutation p.C536F 0.26 deleterious(0) probably_damaging(0.99) TCGA-3A-A9IN-01 19 54074910 54074910 C T ZNF331 Missense_Mutation p.A21V 0.06 deleterious(0) probably_damaging(0.983) TCGA-3A-A9IN-01 19 7615219 7615219 C T PNPLA6 Missense_Mutation p.A626V 0.08 tolerated(1) benign(0.001) TCGA-3A-A9IN-01 1 107867515 107867515 C T NTNG1 Silent p.Y286Y 0.50 TCGA-3A-A9IN-01 1 154515294 154515294 T C TDRD10 Missense_Mutation p.M167T 0.48 deleterious(0) benign(0.203) TCGA-3A-A9IN-01 1 169562853 169562853 G A SELP Silent p.F799F 0.08 TCGA-3A-A9IN-01 20 32246312 32246312 C G NECAB3 Missense_Mutation p.E347D 0.03 deleterious(0) probably_damaging(0.987) TCGA-3A-A9IN-01 21 10914388 10914388 G A TPTE Missense_Mutation p.S444F 0.05 tolerated(0.8) benign(0.056) TCGA-3A-A9IN-01 2 128528422 128528422 C T WDR33 Missense_Mutation p.G45E 0.35 deleterious(0) unknown(0) TCGA-3A-A9IN-01 2 1687905 1687905 C G PXDN Missense_Mutation p.Q145H 0.44 tolerated(0.07) benign(0.03) TCGA-3A-A9IN-01 2 235404735 235404735 C G ARL4C Missense_Mutation p.E166Q 0.46 tolerated(0.24) probably_damaging(0.92) TCGA-3A-A9IN-01 2 74759839 74759839 C T HTRA2 Silent p.H403H 0.05 TCGA-3A-A9IN-01 3 186793611 186793611 C G ST6GAL1 3'UTR 0.44 TCGA-3A-A9IN-01 3 27444674 27444674 A G SLC4A7 Silent p.Y750Y 0.10 TCGA-3A-A9IN-01 4 185615905 185615914 AACTAATTAT - PRIMPOL Frame_Shift_Del p.L553Kfs*7 0.28 TCGA-3A-A9IN-01 4 40752940 40752940 C G NSUN7 Missense_Mutation p.S77C 0.29 tolerated(0.09) benign(0.014) TCGA-3A-A9IN-01 5 100152193 100152193 A T ST8SIA4 Intron 0.37 TCGA-3A-A9IN-01 6 33288715 33288715 C - DAXX Frame_Shift_Del p.P280Lfs*14 0.42 TCGA-3A-A9IN-01 6 44081762 44081762 T C MRPL14 Missense_Mutation p.I86V 0.51 tolerated(0.31) benign(0.074) TCGA-3A-A9IN-01 7 128470833 128470833 G A FLNC Missense_Mutation p.E48K 0.33 deleterious(0) possibly_damaging(0.691) TCGA-3A-A9IN-01 8 2092740 2092740 G C MYOM2 Missense_Mutation p.E1411D 0.47 tolerated(0.18) benign(0.042) TCGA-3A-A9IN-01 9 99799590 99799590 G - CTSV Frame_Shift_Del p.L114Ffs*13 0.29 TCGA-3A-A9IN-01 X 152959611 152959611 C T SLC6A8 Silent p.T427T 0.07 TCGA-3A-A9IO-01 10 75854102 75854102 A G VCL Missense_Mutation p.K476E 0.07 tolerated(0.43) probably_damaging(0.998) TCGA-3A-A9IO-01 19 53302935 53302935 A T ZNF28 3'UTR 0.20 TCGA-3A-A9IO-01 19 9059381 9059381 G T MUC16 Silent p.T9355T 0.09 TCGA-3A-A9IO-01 1 177133612 177133612 G A ASTN1 Silent p.L67L 0.33 TCGA-3A-A9IO-01 1 247769306 247769306 T A OR2G3 Missense_Mutation p.L140H 0.22 deleterious(0.01) probably_damaging(0.969) TCGA-3A-A9IO-01 20 33722547 33722547 G A EDEM2 Silent p.I232I 0.07 TCGA-3A-A9IO-01 2 25046089 25046089 C T ADCY3 Missense_Mutation p.D958N 0.08 deleterious(0) probably_damaging(0.999) TCGA-3A-A9IO-01 3 50385605 50385623 CACGGTAGTGCCAGGGCTC - NPRL2 Frame_Shift_Del p.S289Efs*19 0.46 TCGA-3A-A9IO-01 3 58514557 58514558 AG - ACOX2 Frame_Shift_Del p.T373Sfs*12 0.38 TCGA-3A-A9IO-01 4 186298198 186298198 C T LRP2BP Intron 0.34 TCGA-3A-A9IO-01 8 92998452 92998452 G A RUNX1T1 Silent p.I404I 0.05 TCGA-3A-A9IO-01 9 17416086 17416086 G A CNTLN Missense_Mutation p.A1005T 0.31 tolerated(0.07) possibly_damaging(0.753) TCGA-3A-A9IO-01 X 224472 224472 G A GTPBP6 Missense_Mutation p.R172C 0.09 deleterious(0.02) probably_damaging(0.93) TCGA-3A-A9IR-01 10 33515104 33515104 G A NRP1 Silent p.N365N 0.47 TCGA-3A-A9IR-01 12 49445917 49445917 C - KMT2D Frame_Shift_Del p.E517Sfs*413 0.34 TCGA-3A-A9IR-01 14 59950906 59950906 A G L3HYPDH Silent p.S43S 0.30 TCGA-3A-A9IR-01 14 65253368 65253368 A G SPTB Silent p.G1105G 0.40 TCGA-3A-A9IR-01 14 93412799 93412799 C A ITPK1 Nonsense_Mutation p.E260* 0.48 TCGA-3A-A9IR-01 15 43696705 43696705 T G TUBGCP4 Missense_Mutation p.L648R 0.09 deleterious(0) probably_damaging(0.998) TCGA-3A-A9IR-01 16 20856445 20856445 G A AC004381.6 Missense_Mutation p.G669D 0.41 tolerated(0.06) probably_damaging(0.969) TCGA-3A-A9IR-01 17 7348716 7348716 A G CHRNB1 Silent p.Q62Q 0.41 TCGA-3A-A9IR-01 19 3754263 3754263 A T APBA3 Missense_Mutation p.L231Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-3A-A9IR-01 19 54664079 54664079 G A TMC4 Silent p.R701R 0.43 TCGA-3A-A9IR-01 1 155170284 155170284 T C THBS3 Missense_Mutation p.N556D 0.46 tolerated(1) benign(0.009) TCGA-3A-A9IR-01 1 223284937 223284937 G C TLR5 Missense_Mutation p.F479L 0.46 tolerated(1) benign(0.004) TCGA-3A-A9IR-01 1 35222917 35222917 A G GJB5 5'UTR 0.04 TCGA-3A-A9IR-01 20 24993472 24993472 C A ACSS1 Silent p.G561G 0.45 TCGA-3A-A9IR-01 21 43299470 43299470 C T PRDM15 Missense_Mutation p.R4H 0.37 tolerated_low_confidence(0.48) possibly_damaging(0.522) TCGA-3A-A9IR-01 2 214149201 214149201 G T SPAG16 5'UTR 0.39 TCGA-3A-A9IR-01 3 121126282 121126282 T C STXBP5L Missense_Mutation p.I951T 0.48 deleterious(0.03) benign(0.202) TCGA-3A-A9IR-01 3 57898112 57898112 A G SLMAP Silent p.Q534Q 0.05 TCGA-3A-A9IR-01 3 71803791 71803791 G A GPR27 Silent p.T197T 0.11 TCGA-3A-A9IR-01 5 140208566 140208566 G A PCDHA6 Missense_Mutation p.R297Q 0.46 tolerated_low_confidence(0.12) benign(0.004) TCGA-3A-A9IR-01 6 134373764 134373764 A C SLC2A12 5'UTR 0.43 TCGA-3A-A9IR-01 7 42005281 42005281 G A GLI3 Silent p.D1130D 0.35 TCGA-3A-A9IR-01 9 99180246 99180246 G A ZNF367 Silent p.C23C 0.09 TCGA-3A-A9IR-01 X 50213492 50213492 A G DGKK RNA 0.49 TCGA-3A-A9IR-01 X 70463797 70463797 G A ZMYM3 Missense_Mutation p.A1105V 0.47 deleterious(0.01) possibly_damaging(0.734) TCGA-3A-A9IS-01 10 27536507 27536507 G T RP11-85G18.6 Intron 0.44 TCGA-3A-A9IS-01 11 11354301 11354301 C A GALNT18 Missense_Mutation p.W452C 0.50 deleterious(0) probably_damaging(0.999) TCGA-3A-A9IS-01 11 557841 557841 G C C11orf35 Intron 0.40 TCGA-3A-A9IS-01 11 65360906 65360906 C G KCNK7 Intron 0.44 TCGA-3A-A9IS-01 11 82882859 82882859 G T PCF11 Splice_Site p.X1221_splice 0.13 TCGA-3A-A9IS-01 12 112165781 112165781 C T ACAD10 Silent p.P390P 0.41 TCGA-3A-A9IS-01 12 53686084 53686084 G A ESPL1 Missense_Mutation p.S1940N 0.07 tolerated(0.41) benign(0.02) TCGA-3A-A9IS-01 12 7080041 7080041 T A EMG1 5'UTR 0.25 TCGA-3A-A9IS-01 13 41929345 41929345 C A NAA16 Missense_Mutation p.S360R 0.18 tolerated(0.2) possibly_damaging(0.493) TCGA-3A-A9IS-01 14 37132535 37132535 C A PAX9 Missense_Mutation p.H146Q 0.32 tolerated(0.21) probably_damaging(0.986) TCGA-3A-A9IS-01 14 96730887 96730887 A G BDKRB1 Missense_Mutation p.I290V 0.29 tolerated(0.42) benign(0.026) TCGA-3A-A9IS-01 17 29556978 29556978 G A NF1 Missense_Mutation p.M992I 0.32 tolerated(0.13) possibly_damaging(0.577) TCGA-3A-A9IS-01 18 60051988 60051991 TGTG A TNFRSF11A In_Frame_Del p.N524_V525delinsK 0.31 TCGA-3A-A9IS-01 19 1428858 1428858 T A DAZAP1 Silent p.A188A 0.09 TCGA-3A-A9IS-01 19 2250861 2250861 T G AMH Missense_Mutation p.S226R 0.08 deleterious(0.04) probably_damaging(0.928) TCGA-3A-A9IS-01 19 45284309 45284309 G A CBLC Splice_Site p.X167_splice 0.03 TCGA-3A-A9IS-01 19 52375911 52375911 A - ZNF577 Frame_Shift_Del p.P445Qfs*7 0.30 TCGA-3A-A9IS-01 1 118485115 118485115 C - WDR3 Frame_Shift_Del p.L349Cfs*8 0.35 TCGA-3A-A9IS-01 1 227935771 227935771 G A SNAP47 Missense_Mutation p.A157T 0.53 tolerated(0.13) benign(0.003) TCGA-3A-A9IS-01 1 227935772 227935772 C T SNAP47 Missense_Mutation p.A157V 0.53 tolerated(0.17) benign(0.001) TCGA-3A-A9IS-01 1 249150605 249150605 G A ZNF692 Missense_Mutation p.P186S 0.45 tolerated(0.35) benign(0.024) TCGA-3A-A9IS-01 1 94466574 94466574 C - ABCA4 Frame_Shift_Del p.V2124Sfs*21 0.35 TCGA-3A-A9IS-01 20 16488699 16488699 A - KIF16B Frame_Shift_Del p.M202Wfs*15 0.12 TCGA-3A-A9IS-01 20 31601685 31601685 C T BPIFB2 Silent p.S126S 0.24 TCGA-3A-A9IS-01 20 45133322 45133322 G A ZNF334 Silent p.L27L 0.21 TCGA-3A-A9IS-01 20 60791076 60791076 G A HRH3 Missense_Mutation p.H442Y 0.24 tolerated_low_confidence(0.09) benign(0.007) TCGA-3A-A9IS-01 20 62195959 62195959 T A HELZ2 Missense_Mutation p.M1406L 0.31 deleterious(0.04) benign(0.134) TCGA-3A-A9IS-01 2 107049640 107049640 C A RGPD3 Missense_Mutation p.L769F 0.24 tolerated(0.63) benign(0.146) TCGA-3A-A9IS-01 2 109408155 109408155 C A CCDC138 Missense_Mutation p.F97L 0.41 tolerated(0.23) benign(0.294) TCGA-3A-A9IS-01 2 163003928 163003928 G A GCG Silent p.S63S 0.15 TCGA-3A-A9IS-01 2 216288219 216288219 T C FN1 Missense_Mutation p.N416S 0.45 deleterious(0) probably_damaging(0.976) TCGA-3A-A9IS-01 2 242168911 242168911 G A HDLBP 3'UTR 0.16 TCGA-3A-A9IS-01 2 85822895 85822895 C T RNF181 Silent p.S3S 0.41 TCGA-3A-A9IS-01 3 45126999 45126999 G A CDCP1 3'UTR 0.27 TCGA-3A-A9IS-01 4 146563617 146563619 CTT - MMAA In_Frame_Del p.S183del 0.32 TCGA-3A-A9IS-01 4 2339217 2339217 G C ZFYVE28 Silent p.V176V 0.19 TCGA-3A-A9IS-01 5 114548273 114548273 C G PGGT1B Missense_Mutation p.L320F 0.21 tolerated(0.28) possibly_damaging(0.538) TCGA-3A-A9IS-01 5 121356407 121356407 C A SRFBP1 Missense_Mutation p.T326K 0.50 tolerated(0.14) benign(0.035) TCGA-3A-A9IS-01 5 127744367 127744367 C T FBN2 Missense_Mutation p.D360N 0.21 deleterious(0.03) benign(0.441) TCGA-3A-A9IS-01 5 169805501 169805501 T C KCNMB1 3'UTR 0.31 TCGA-3A-A9IS-01 5 848671 848671 G - ZDHHC11 Frame_Shift_Del p.M110Cfs*12 0.11 TCGA-3A-A9IS-01 7 104747966 104747966 C T KMT2E Missense_Mutation p.S1021L 0.30 deleterious_low_confidence(0) benign(0.307) TCGA-3A-A9IS-01 7 138944016 138944016 C T UBN2 Missense_Mutation p.P269S 0.26 tolerated(0.85) benign(0.002) TCGA-3A-A9IS-01 7 42958801 42958801 T C PSMA2 Intron 0.30 TCGA-3A-A9IS-01 9 135554771 135554771 C T GTF3C4 Nonsense_Mutation p.Q589* 0.25 TCGA-3A-A9IS-01 9 137017152 137017152 G A WDR5 Splice_Site p.X211_splice 0.29 TCGA-3A-A9IS-01 9 138649158 138649158 G A KCNT1 Silent p.P230P 0.33 TCGA-3A-A9IS-01 X 139866027 139866027 G A CDR1 Missense_Mutation p.R169C 0.03 tolerated(0.2) possibly_damaging(0.835) TCGA-3A-A9IS-01 X 153994624 153994624 A G DKC1 Missense_Mutation p.I133V 0.07 deleterious(0.02) benign(0.199) TCGA-3A-A9IS-01 X 76778782 76778782 A C ATRX Missense_Mutation p.L2266W 0.97 probably_damaging(0.999) TCGA-3A-A9IS-01 X 99551254 99551254 C T PCDH19 3'UTR 0.92 TCGA-3A-A9IU-01 10 74310995 74310995 C T MICU1 Silent p.V145V 0.45 TCGA-3A-A9IU-01 11 72408662 72408662 C T ARAP1 Missense_Mutation p.V924M 0.24 deleterious(0) possibly_damaging(0.841) TCGA-3A-A9IU-01 11 88924443 88924443 G A TYR Missense_Mutation p.R298Q 0.29 tolerated(0.34) benign(0.213) TCGA-3A-A9IU-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.24 deleterious(0) benign(0.361) TCGA-3A-A9IU-01 12 45105106 45105106 G T NELL2 Silent p.T436T 0.21 TCGA-3A-A9IU-01 13 23903583 23903583 C T SACS 3'UTR 0.28 TCGA-3A-A9IU-01 15 25953374 25953374 T G ATP10A Missense_Mutation p.E806D 0.25 tolerated(1) benign(0.001) TCGA-3A-A9IU-01 15 91557033 91557033 C T VPS33B Splice_Site p.X119_splice 0.25 TCGA-3A-A9IU-01 16 1129924 1129924 C T SSTR5 Silent p.R352R 0.19 TCGA-3A-A9IU-01 16 2156826 2156826 T C PKD1 Missense_Mutation p.S2397G 0.09 benign(0.008) TCGA-3A-A9IU-01 16 4016903 4016903 C T ADCY9 Missense_Mutation p.G979S 0.28 tolerated(0.65) benign(0.051) TCGA-3A-A9IU-01 18 34901802 34901802 G A CELF4 Nonsense_Mutation p.R138* 0.33 TCGA-3A-A9IU-01 18 48703322 48703322 C T MEX3C Missense_Mutation p.G460E 0.38 tolerated(0.12) benign(0.264) TCGA-3A-A9IU-01 18 48703539 48703539 C G MEX3C Missense_Mutation p.E388Q 0.28 deleterious(0.02) possibly_damaging(0.841) TCGA-3A-A9IU-01 18 48703576 48703576 C T MEX3C Silent p.G375G 0.33 TCGA-3A-A9IU-01 18 48703851 48703851 C G MEX3C Missense_Mutation p.E284Q 0.22 deleterious(0.05) probably_damaging(0.974) TCGA-3A-A9IU-01 18 48703884 48703884 C T MEX3C Missense_Mutation p.E273K 0.24 deleterious(0) probably_damaging(0.991) TCGA-3A-A9IU-01 18 48703887 48703887 C T MEX3C Missense_Mutation p.G272S 0.24 deleterious(0) probably_damaging(1) TCGA-3A-A9IU-01 18 65180274 65180274 C A DSEL Missense_Mutation p.Q534H 0.47 deleterious(0.05) benign(0.081) TCGA-3A-A9IU-01 18 65180275 65180275 T A DSEL Missense_Mutation p.Q534L 0.47 deleterious(0) possibly_damaging(0.763) TCGA-3A-A9IU-01 18 8784181 8784181 C T SOGA2 Silent p.H357H 0.24 TCGA-3A-A9IU-01 19 17405196 17405196 G A ABHD8 Silent p.G350G 0.41 TCGA-3A-A9IU-01 19 49232704 49232704 G A RASIP1 Silent p.R441R 0.17 TCGA-3A-A9IU-01 19 58862886 58862886 G A A1BG Missense_Mutation p.R261C 0.24 deleterious(0.01) probably_damaging(0.969) TCGA-3A-A9IU-01 1 154192337 154192337 A T C1orf43 Missense_Mutation p.V48D 0.20 deleterious(0.01) possibly_damaging(0.846) TCGA-3A-A9IU-01 1 213061902 213061903 - TACT FLVCR1 Frame_Shift_Ins p.S462Yfs*7 0.22 TCGA-3A-A9IU-01 20 58519968 58519968 C T FAM217B Nonsense_Mutation p.R324* 0.26 TCGA-3A-A9IU-01 22 50279783 50279783 G A ZBED4 Missense_Mutation p.V825M 0.39 tolerated(0.17) benign(0.324) TCGA-3A-A9IU-01 2 101089991 101089991 G A NMS Missense_Mutation p.R58H 0.23 tolerated(0.31) benign(0.374) TCGA-3A-A9IU-01 2 28635275 28635275 C T FOSL2 Missense_Mutation p.S314L 0.27 deleterious(0) probably_damaging(0.95) TCGA-3A-A9IU-01 2 97400208 97400208 C G LMAN2L Missense_Mutation p.G121A 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-3A-A9IU-01 3 121720701 121720701 G A ILDR1 Silent p.L130L 0.28 TCGA-3A-A9IU-01 3 170786732 170786732 C T TNIK Missense_Mutation p.G1202S 0.28 deleterious(0) probably_damaging(0.999) TCGA-3A-A9IU-01 3 52555958 52555958 G A STAB1 Missense_Mutation p.V2088M 0.27 tolerated(0.22) benign(0.004) TCGA-3A-A9IU-01 5 80667586 80667586 A G ACOT12 Missense_Mutation p.F81L 0.26 deleterious(0) probably_damaging(0.999) TCGA-3A-A9IU-01 5 96342191 96342191 A G LNPEP Silent p.Q669Q 0.26 TCGA-3A-A9IU-01 6 10984107 10984107 C A ELOVL2 Missense_Mutation p.M266I 0.25 tolerated(0.31) benign(0) TCGA-3A-A9IU-01 7 48411864 48411864 G A ABCA13 Missense_Mutation p.V3635I 0.27 benign(0.001) TCGA-3A-A9IU-01 8 85774611 85774611 C T RALYL Missense_Mutation p.T178M 0.28 tolerated(0.14) benign(0.417) TCGA-3A-A9IU-01 9 21971000 21971000 C A CDKN2A Nonsense_Mutation p.E120* 0.38 TCGA-3A-A9IU-01 9 7049110 7049110 C T KDM4C Silent p.C778C 0.38 TCGA-3A-A9IU-01 9 77282784 77282784 G A RORB Missense_Mutation p.A360T 0.28 deleterious(0) probably_damaging(0.93) TCGA-3A-A9IU-01 X 135429875 135429875 C A GPR112 Missense_Mutation p.T1337K 0.53 deleterious(0) possibly_damaging(0.541) TCGA-3A-A9IV-01 10 88459097 88459097 G C LDB3 Intron 0.87 TCGA-3A-A9IV-01 10 96805579 96805579 G A CYP2C8 Missense_Mutation p.P317S 0.35 deleterious(0.01) probably_damaging(0.942) TCGA-3A-A9IV-01 11 108236153 108236153 G T ATM Missense_Mutation p.G3030V 0.41 deleterious(0) probably_damaging(1) TCGA-3A-A9IV-01 11 43602960 43602960 T C MIR129-2 RNA 0.87 TCGA-3A-A9IV-01 11 65269606 65269610 ATCTG CTCT MALAT1 RNA 0.35 TCGA-3A-A9IV-01 12 10561520 10561520 G A KLRC4 Missense_Mutation p.L93F 0.26 tolerated(0.2) benign(0.017) TCGA-3A-A9IV-01 12 123983260 123983260 C T RILPL1 Missense_Mutation p.R211Q 0.09 deleterious(0.01) possibly_damaging(0.803) TCGA-3A-A9IV-01 12 4919415 4919415 C T KCNA6 Missense_Mutation p.P70S 0.56 deleterious(0.02) probably_damaging(0.999) TCGA-3A-A9IV-01 12 4919970 4919970 G C KCNA6 Missense_Mutation p.G255R 0.60 tolerated(0.54) benign(0) TCGA-3A-A9IV-01 13 49951138 49951138 T C CAB39L Missense_Mutation p.T81A 0.37 tolerated(0.5) benign(0.001) TCGA-3A-A9IV-01 13 74387392 74387392 G T KLF12 Missense_Mutation p.Q235K 0.41 tolerated(0.08) benign(0.039) TCGA-3A-A9IV-01 14 106926420 106926420 C A IGHV3-43 Missense_Mutation p.C41F 0.43 deleterious_low_confidence(0) possibly_damaging(0.619) TCGA-3A-A9IV-01 14 29237840 29237840 C T FOXG1 Missense_Mutation p.P452L 0.19 tolerated_low_confidence(0.42) benign(0.065) TCGA-3A-A9IV-01 14 64519024 64519024 C T SYNE2 Missense_Mutation p.T2798I 0.46 benign(0.045) TCGA-3A-A9IV-01 15 39882017 39882017 C T THBS1 Silent p.P646P 0.34 TCGA-3A-A9IV-01 15 39892986 39892986 T C FSIP1 3'UTR 0.81 TCGA-3A-A9IV-01 15 52643597 52643597 G A MYO5A Missense_Mutation p.P1235S 0.33 tolerated(0.73) benign(0.007) TCGA-3A-A9IV-01 15 68379085 68379089 CTAGG - PIAS1 Splice_Site p.X156_splice 0.71 TCGA-3A-A9IV-01 15 86266503 86266503 G A AKAP13 Missense_Mutation p.V2237I 0.45 tolerated(0.49) benign(0.001) TCGA-3A-A9IV-01 16 3077715 3077715 T C THOC6 3'UTR 0.68 TCGA-3A-A9IV-01 16 66956180 66956180 C A RRAD Silent p.A242A 0.84 TCGA-3A-A9IV-01 17 17106061 17106061 G A PLD6 3'UTR 0.14 TCGA-3A-A9IV-01 17 3370783 3370783 G T SPATA22 Missense_Mutation p.L37I 0.24 tolerated(0.08) benign(0.416) TCGA-3A-A9IV-01 17 72937715 72937715 C A OTOP3 Missense_Mutation p.L101M 0.61 deleterious(0) probably_damaging(0.999) TCGA-3A-A9IV-01 17 73870863 73870863 G C TRIM47 Missense_Mutation p.L540V 0.59 tolerated(0.12) probably_damaging(0.999) TCGA-3A-A9IV-01 18 2566951 2566951 G A METTL4 Nonsense_Mutation p.R89* 0.19 TCGA-3A-A9IV-01 18 43417042 43417042 C T SIGLEC15 Missense_Mutation p.T34I 0.40 tolerated(0.06) benign(0.038) TCGA-3A-A9IV-01 19 13873869 13873869 C T CCDC130 Missense_Mutation p.S393L 0.20 deleterious(0) probably_damaging(0.991) TCGA-3A-A9IV-01 19 19672926 19672926 C A PBX4 Missense_Mutation p.A345S 0.17 tolerated_low_confidence(0.14) benign(0.04) TCGA-3A-A9IV-01 19 21132761 21132761 C A ZNF85 Missense_Mutation p.P481T 0.42 deleterious(0.01) benign(0.193) TCGA-3A-A9IV-01 19 21281113 21281113 C G ZNF714 Missense_Mutation p.F13L 0.14 deleterious(0) probably_damaging(0.98) TCGA-3A-A9IV-01 19 39597715 39597715 G A PAPL Silent p.S414S 0.28 TCGA-3A-A9IV-01 19 53304126 53304126 C T ZNF28 Silent p.G324G 0.31 TCGA-3A-A9IV-01 1 109822732 109822732 G T PSRC1 3'UTR 0.29 TCGA-3A-A9IV-01 1 156843643 156843643 G A NTRK1 Missense_Mutation p.G357S 0.26 deleterious(0) probably_damaging(1) TCGA-3A-A9IV-01 1 39799857 39799857 G A MACF1 Intron 0.36 TCGA-3A-A9IV-01 20 31685516 31685516 G A BPIFB4 Missense_Mutation p.V498M 0.24 deleterious(0.05) probably_damaging(0.994) TCGA-3A-A9IV-01 20 40049225 40049225 C T CHD6 Missense_Mutation p.G2017E 0.21 tolerated_low_confidence(0.55) benign(0.158) TCGA-3A-A9IV-01 20 42088842 42088842 G A SRSF6 Missense_Mutation p.R184H 0.21 deleterious(0.01) unknown(0) TCGA-3A-A9IV-01 20 48561967 48561967 C G RNF114 Missense_Mutation p.Q114E 0.39 tolerated(0.05) benign(0.191) TCGA-3A-A9IV-01 2 217340008 217340008 G A SMARCAL1 Missense_Mutation p.R754H 0.33 deleterious(0.01) benign(0.262) TCGA-3A-A9IV-01 3 183756704 183756704 C T HTR3D Missense_Mutation p.L436F 0.84 deleterious(0.04) possibly_damaging(0.635) TCGA-3A-A9IV-01 5 137754813 137754814 AG - KDM3B Frame_Shift_Del p.S1203* 0.32 TCGA-3A-A9IV-01 5 140799824 140799826 AAG - PCDHGB7 In_Frame_Del p.K801del 0.66 TCGA-3A-A9IV-01 5 169506095 169506095 G A DOCK2 Missense_Mutation p.R1704K 0.60 tolerated_low_confidence(0.22) possibly_damaging(0.471) TCGA-3A-A9IV-01 5 65350232 65350232 A G ERBB2IP Missense_Mutation p.N1029S 0.29 tolerated(0.07) probably_damaging(0.997) TCGA-3A-A9IV-01 5 74652258 74652258 G T HMGCR Missense_Mutation p.M657I 0.31 deleterious(0) probably_damaging(0.996) TCGA-3A-A9IV-01 5 79033053 79033053 C T CMYA5 Missense_Mutation p.S2822L 0.65 benign(0.121) TCGA-3A-A9IV-01 5 82815406 82815406 T C VCAN Silent p.T427T 0.28 TCGA-3A-A9IV-01 5 86674214 86674214 T C RASA1 Silent p.D782D 0.57 TCGA-3A-A9IV-01 6 152786392 152786392 C T SYNE1 Splice_Site p.X644_splice 0.85 TCGA-3A-A9IV-01 6 31785295 31785295 G A HSPA1A Missense_Mutation p.E588K 0.61 deleterious_low_confidence(0.01) benign(0.321) TCGA-3A-A9IV-01 6 39876859 39876859 C T MOCS1 Silent p.Q374Q 0.36 TCGA-3A-A9IV-01 7 106300652 106300652 G A CCDC71L Missense_Mutation p.P231S 0.41 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-3A-A9IV-01 7 142119945 142119945 T C TRBV7-7 Silent p.P74P 0.43 TCGA-3A-A9IV-01 7 72722532 72722532 C T NSUN5 Missense_Mutation p.A38T 0.03 deleterious(0) probably_damaging(0.985) TCGA-3A-A9IV-01 X 76778853 76778879 CTGAAGGAGCTCTGCAAGTATGGTATC - ATRX In_Frame_Del p.D2234_Q2242del 0.77 TCGA-3A-A9IX-01 12 49717988 49717988 C T TROAP Intron 0.04 TCGA-3A-A9IX-01 13 97999092 97999092 G A MBNL2 Missense_Mutation p.R192Q 0.05 deleterious(0.04) probably_damaging(0.994) TCGA-3A-A9IX-01 14 63269191 63269191 G A KCNH5 Missense_Mutation p.R560C 0.04 deleterious(0) probably_damaging(0.945) TCGA-3A-A9IX-01 15 84909451 84909451 C T GOLGA6L4 Missense_Mutation p.R449W 0.22 deleterious(0.02) unknown(0) TCGA-3A-A9IX-01 16 108512 108512 G A RHBDF1 Missense_Mutation p.R799W 0.05 deleterious(0.02) possibly_damaging(0.88) TCGA-3A-A9IX-01 16 30456632 30456632 G T SEPHS2 Missense_Mutation p.F139L 0.04 benign(0.208) TCGA-3A-A9IX-01 16 56973198 56973198 G A HERPUD1 Missense_Mutation p.G161S 0.05 tolerated(0.21) benign(0.006) TCGA-3A-A9IX-01 17 7578475 7578475 G - TP53 Frame_Shift_Del p.P152Rfs*18 0.08 TCGA-3A-A9IX-01 1 112298213 112298214 - GC DDX20 5'UTR 0.26 TCGA-3A-A9IX-01 1 153747855 153747855 G A SLC27A3 Missense_Mutation p.R8H 0.05 deleterious_low_confidence(0) unknown(0) TCGA-3A-A9IX-01 1 247473673 247473673 T C ZNF496 Missense_Mutation p.Y246C 0.05 deleterious(0) probably_damaging(0.984) TCGA-3A-A9IX-01 21 39087258 39087258 C T KCNJ6 Missense_Mutation p.G68S 0.04 tolerated(0.14) probably_damaging(0.984) TCGA-3A-A9IX-01 2 11772081 11772081 G A GREB1 Missense_Mutation p.R1553H 0.05 deleterious(0) probably_damaging(0.999) TCGA-3A-A9IX-01 2 229890686 229890686 G A PID1 Missense_Mutation p.R137W 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-3A-A9IX-01 3 1418745 1418745 G A CNTN6 Missense_Mutation p.V718I 0.03 tolerated(0.07) benign(0.008) TCGA-3A-A9IX-01 3 164786914 164786914 C T SI Missense_Mutation p.V109I 0.09 deleterious(0) benign(0.014) TCGA-3A-A9IX-01 3 52292632 52292632 C A WDR82 Missense_Mutation p.D278Y 0.06 deleterious(0) possibly_damaging(0.811) TCGA-3A-A9IX-01 3 77600066 77600066 C T ROBO2 Missense_Mutation p.A402V 0.05 tolerated(0.16) possibly_damaging(0.798) TCGA-3A-A9IX-01 7 103474008 103474008 G A RELN Missense_Mutation p.A150V 0.05 deleterious(0.04) benign(0.016) TCGA-3A-A9IX-01 8 3263557 3263557 C T CSMD1 Missense_Mutation p.R753H 0.06 probably_damaging(0.999) TCGA-3A-A9IX-01 9 139265516 139265516 G A CARD9 Missense_Mutation p.A135V 0.07 tolerated(0.35) benign(0.003) TCGA-3A-A9IX-01 X 10102530 10102530 A G WWC3 Missense_Mutation p.K886R 0.10 tolerated(0.08) possibly_damaging(0.691) TCGA-3A-A9IX-01 X 79971717 79971717 T A BRWD3 Missense_Mutation p.D755V 0.07 deleterious(0.04) possibly_damaging(0.864) TCGA-3A-A9IX-01 X 79971738 79971738 T A BRWD3 Missense_Mutation p.E748V 0.07 deleterious(0.01) possibly_damaging(0.644) TCGA-3A-A9IZ-01 10 117221467 117221474 TTATCAAT - ATRNL1 Frame_Shift_Del p.Q1115Lfs*8 0.33 TCGA-3A-A9IZ-01 10 16882333 16882333 G A CUBN Missense_Mutation p.P3343L 0.25 deleterious(0.02) benign(0.103) TCGA-3A-A9IZ-01 10 72289039 72289039 C A PALD1 Nonsense_Mutation p.Y80* 0.23 TCGA-3A-A9IZ-01 10 99024599 99024599 A T ARHGAP19 Silent p.I129I 0.38 TCGA-3A-A9IZ-01 11 118375293 118375293 C A KMT2A Missense_Mutation p.L2896I 0.22 probably_damaging(0.99) TCGA-3A-A9IZ-01 11 30032887 30032887 G A KCNA4 Missense_Mutation p.R447C 0.05 deleterious(0) probably_damaging(0.997) TCGA-3A-A9IZ-01 11 4928955 4928955 C A OR51A7 Missense_Mutation p.S119Y 0.39 deleterious(0) probably_damaging(0.981) TCGA-3A-A9IZ-01 11 57958767 57958767 G A OR9Q2 Missense_Mutation p.E269K 0.21 tolerated(0.07) benign(0.072) TCGA-3A-A9IZ-01 11 6953847 6953847 A G ZNF215 Missense_Mutation p.N115S 0.16 tolerated(0.09) benign(0.166) TCGA-3A-A9IZ-01 11 73364058 73364058 C G PLEKHB1 Missense_Mutation p.P130R 0.06 deleterious(0.03) possibly_damaging(0.843) TCGA-3A-A9IZ-01 11 93911725 93911725 C T PANX1 Missense_Mutation p.S171L 0.22 tolerated(0.38) benign(0.002) TCGA-3A-A9IZ-01 12 118481162 118481162 G C WSB2 Missense_Mutation p.A68G 0.03 tolerated(0.37) benign(0.001) TCGA-3A-A9IZ-01 12 15807213 15807213 T G EPS8 Silent p.T372T 0.05 TCGA-3A-A9IZ-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.27 deleterious(0) benign(0.361) TCGA-3A-A9IZ-01 12 3649855 3649855 C A PRMT8 Silent p.P53P 0.27 TCGA-3A-A9IZ-01 13 51287310 51287310 T C DLEU7 3'UTR 0.45 TCGA-3A-A9IZ-01 13 99339977 99339977 T C SLC15A1 Missense_Mutation p.N562S 0.38 tolerated(1) benign(0.001) TCGA-3A-A9IZ-01 14 69791503 69791503 A T GALNT16 Nonsense_Mutation p.K144* 0.29 TCGA-3A-A9IZ-01 15 23812458 23812458 G A MKRN3 3'UTR 0.22 TCGA-3A-A9IZ-01 15 48766481 48766481 C G FBN1 Missense_Mutation p.G1394A 0.32 possibly_damaging(0.771) TCGA-3A-A9IZ-01 15 75014944 75014944 C A CYP1A1 Missense_Mutation p.K165N 0.24 deleterious(0.04) benign(0.059) TCGA-3A-A9IZ-01 16 15677014 15677014 G C C16orf45 Missense_Mutation p.E141Q 0.09 deleterious(0.02) possibly_damaging(0.864) TCGA-3A-A9IZ-01 16 16284067 16284068 - GG ABCC6 Frame_Shift_Ins p.L530Pfs*34 0.25 TCGA-3A-A9IZ-01 16 1869148 1869148 G A HAGH Missense_Mutation p.P170L 0.30 deleterious(0.05) possibly_damaging(0.547) TCGA-3A-A9IZ-01 16 22385600 22385600 C G CDR2 Missense_Mutation p.E11Q 0.23 tolerated(0.25) probably_damaging(0.999) TCGA-3A-A9IZ-01 16 81232548 81232548 C G PKD1L2 Missense_Mutation p.G421A 0.23 deleterious(0.01) possibly_damaging(0.902) TCGA-3A-A9IZ-01 17 42336630 42336630 C T SLC4A1 Silent p.P259P 0.30 TCGA-3A-A9IZ-01 17 58511366 58511366 C T C17orf64 3'Flank 0.26 TCGA-3A-A9IZ-01 17 71381998 71381998 T A SDK2 Silent p.L1519L 0.29 TCGA-3A-A9IZ-01 17 7577559 7577559 G T TP53 Missense_Mutation p.S241Y 0.37 deleterious(0) probably_damaging(1) TCGA-3A-A9IZ-01 17 8170106 8170106 G A PFAS Missense_Mutation p.V953M 0.38 deleterious(0.01) possibly_damaging(0.869) TCGA-3A-A9IZ-01 18 29116237 29116237 T G DSG2 Missense_Mutation p.L499R 0.04 deleterious(0) probably_damaging(0.999) TCGA-3A-A9IZ-01 19 39899383 39899383 C A ZFP36 3'UTR 0.27 TCGA-3A-A9IZ-01 19 6829851 6829851 C G VAV1 Silent p.S440S 0.07 TCGA-3A-A9IZ-01 1 115828736 115828736 C T NGF Silent p.T227T 0.04 TCGA-3A-A9IZ-01 1 12887282 12887282 C T PRAMEF11 Missense_Mutation p.R192K 0.45 tolerated(0.89) benign(0.023) TCGA-3A-A9IZ-01 1 152275642 152275642 C T FLG Missense_Mutation p.R3907H 0.06 unknown(0) TCGA-3A-A9IZ-01 1 152282178 152282178 C A FLG Missense_Mutation p.E1728D 0.28 benign(0.217) TCGA-3A-A9IZ-01 1 33957115 33957115 T C ZSCAN20 Silent p.D419D 0.25 TCGA-3A-A9IZ-01 1 34383705 34383705 A T CSMD2 Missense_Mutation p.S264T 0.23 tolerated(0.17) benign(0.232) TCGA-3A-A9IZ-01 1 77528872 77528872 A G ST6GALNAC5 Missense_Mutation p.E331G 0.26 benign(0.024) TCGA-3A-A9IZ-01 1 82453016 82453016 T C LPHN2 Intron 0.27 TCGA-3A-A9IZ-01 22 16287625 16287625 G A POTEH Silent p.D87D 0.19 TCGA-3A-A9IZ-01 2 128471486 128471486 G A WDR33 Silent p.G993G 0.03 TCGA-3A-A9IZ-01 2 131984442 131984442 A C POTEE Missense_Mutation p.Q286P 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.785) TCGA-3A-A9IZ-01 2 158157419 158157419 C G GALNT5 Missense_Mutation p.L783V 0.29 deleterious(0) probably_damaging(0.963) TCGA-3A-A9IZ-01 2 24051724 24051724 C T ATAD2B Missense_Mutation p.C605Y 0.29 deleterious(0) possibly_damaging(0.838) TCGA-3A-A9IZ-01 2 25468126 25468126 C G DNMT3A Missense_Mutation p.C517S 0.25 deleterious(0) probably_damaging(0.998) TCGA-3A-A9IZ-01 2 48808480 48808480 C T STON1-GTF2A1L Silent p.L236L 0.10 TCGA-3A-A9IZ-01 2 97365699 97365721 GCCCCCAAGCTACCTCCTAGAAC - FER1L5 RNA 0.27 TCGA-3A-A9IZ-01 3 108149680 108149680 T G MYH15 Missense_Mutation p.Q1124P 0.29 deleterious(0) probably_damaging(0.987) TCGA-3A-A9IZ-01 3 14209834 14209834 G A XPC Silent p.F153F 0.21 TCGA-3A-A9IZ-01 3 172028627 172028627 G C FNDC3B Missense_Mutation p.D404H 0.04 deleterious(0) probably_damaging(0.994) TCGA-3A-A9IZ-01 3 53289849 53289849 C A TKT Intron 0.31 TCGA-3A-A9IZ-01 4 96075899 96075899 C G BMPR1B 3'UTR 0.27 TCGA-3A-A9IZ-01 5 127488461 127488461 G A SLC12A2 Missense_Mutation p.R776H 0.24 tolerated(0.23) benign(0.031) TCGA-3A-A9IZ-01 5 140799066 140799066 G C PCDHGB7 Missense_Mutation p.S547T 0.25 tolerated(0.38) possibly_damaging(0.88) TCGA-3A-A9IZ-01 5 1432653 1432653 A - SLC6A3 Frame_Shift_Del p.P194Lfs*66 0.21 TCGA-3A-A9IZ-01 5 169267840 169267840 G A DOCK2 Missense_Mutation p.R928Q 0.24 tolerated(0.06) possibly_damaging(0.556) TCGA-3A-A9IZ-01 5 178585787 178585787 C T ADAMTS2 Missense_Mutation p.D357N 0.28 tolerated(0.09) benign(0.41) TCGA-3A-A9IZ-01 5 45262090 45262090 C T HCN1 Missense_Mutation p.R869K 0.30 tolerated_low_confidence(0.21) benign(0.001) TCGA-3A-A9IZ-01 6 109309803 109309828 TTCAGGAGTGCAAACAACAGTTTTGA - SESN1 Frame_Shift_Del p.I496Kfs*8 0.46 TCGA-3A-A9IZ-01 6 135560395 135560395 T C MIR548A2 3'Flank 0.33 TCGA-3A-A9IZ-01 6 24582552 24582552 C T KIAA0319 Nonsense_Mutation p.W372* 0.27 TCGA-3A-A9IZ-01 7 113518053 113518053 C G PPP1R3A Missense_Mutation p.V1032L 0.25 tolerated(0.32) benign(0) TCGA-3A-A9IZ-01 7 28610110 28610110 C A CREB5 Missense_Mutation p.S140Y 0.26 deleterious(0) probably_damaging(0.961) TCGA-3A-A9IZ-01 8 107705020 107705020 G A OXR1 Missense_Mutation p.R198Q 0.20 deleterious(0.01) benign(0.256) TCGA-3A-A9IZ-01 8 8875864 8875864 A T ERI1 Missense_Mutation p.M214L 0.23 tolerated(0.6) benign(0.015) TCGA-3A-A9IZ-01 8 97342493 97342493 A G PTDSS1 Missense_Mutation p.Y409C 0.17 tolerated(0.15) benign(0.001) TCGA-3A-A9IZ-01 9 104357018 104357018 G A PPP3R2 Silent p.F65F 0.27 TCGA-3A-A9IZ-01 9 139412288 139412288 C T NOTCH1 Missense_Mutation p.V453I 0.24 tolerated(0.95) benign(0.264) TCGA-3A-A9IZ-01 9 79318726 79318726 G A PRUNE2 Silent p.A2601A 0.25 TCGA-3A-A9IZ-01 9 90501079 90501079 C T SPATA31E1 Silent p.V559V 0.03 TCGA-3A-A9IZ-01 X 133303764 133303764 C T MIR19B2 RNA 0.16 TCGA-3A-A9IZ-01 X 152159333 152159333 C G PNMA5 Silent p.L270L 0.17 TCGA-3A-A9J0-01 10 125557591 125557591 C T CPXM2 Missense_Mutation p.V264I 0.07 tolerated(0.14) benign(0.028) TCGA-3A-A9J0-01 10 24959236 24959236 T G ARHGAP21 Missense_Mutation p.T52P 0.06 tolerated(0.14) benign(0.077) TCGA-3A-A9J0-01 10 6063598 6063598 G A IL2RA Silent p.F142F 0.22 TCGA-3A-A9J0-01 10 7423877 7423877 T G SFMBT2 5'UTR 0.63 TCGA-3A-A9J0-01 11 125281736 125281736 G A PKNOX2 Missense_Mutation p.R304H 0.18 deleterious(0) probably_damaging(0.991) TCGA-3A-A9J0-01 11 129993656 129993656 G A APLP2 Missense_Mutation p.A358T 0.18 deleterious(0.05) probably_damaging(0.983) TCGA-3A-A9J0-01 11 13749183 13749183 G T FAR1 Missense_Mutation p.L446F 0.16 tolerated(0.19) possibly_damaging(0.893) TCGA-3A-A9J0-01 11 75851957 75851957 G A UVRAG Missense_Mutation p.V534I 0.19 tolerated_low_confidence(0.52) benign(0.001) TCGA-3A-A9J0-01 12 132396530 132396530 C T ULK1 Missense_Mutation p.P331L 0.58 deleterious(0) probably_damaging(0.999) TCGA-3A-A9J0-01 12 133502024 133502024 C G ZNF605 Missense_Mutation p.E652Q 0.40 tolerated(0.12) benign(0.069) TCGA-3A-A9J0-01 12 32754273 32754273 A G FGD4 Missense_Mutation p.N251S 0.21 tolerated(0.06) benign(0.326) TCGA-3A-A9J0-01 13 100637726 100637726 G T ZIC2 Silent p.A463A 0.11 TCGA-3A-A9J0-01 13 25444786 25444786 C T RNF17 Silent p.S1452S 0.29 TCGA-3A-A9J0-01 13 33635841 33635841 C T KL Silent p.I875I 0.37 TCGA-3A-A9J0-01 13 53420319 53420319 G A PCDH8 Silent p.I751I 0.11 TCGA-3A-A9J0-01 13 58207158 58207158 G A PCDH17 Missense_Mutation p.D160N 0.11 deleterious(0) probably_damaging(1) TCGA-3A-A9J0-01 13 78293775 78293775 G A SLAIN1 Silent p.A81A 0.12 TCGA-3A-A9J0-01 14 53386031 53386031 C T FERMT2 Silent p.K67K 0.13 TCGA-3A-A9J0-01 14 64066609 64066609 A T WDR89 Missense_Mutation p.L18I 0.26 tolerated(0.49) benign(0.001) TCGA-3A-A9J0-01 14 93651708 93651708 C T TMEM251 5'UTR 0.31 TCGA-3A-A9J0-01 15 52534277 52534277 G A MYO5C Nonsense_Mutation p.R842* 0.25 TCGA-3A-A9J0-01 15 54825264 54825264 C T UNC13C Missense_Mutation p.T1899I 0.07 tolerated_low_confidence(0.06) benign(0.006) TCGA-3A-A9J0-01 15 93588701 93588701 C T RGMA Missense_Mutation p.V302I 0.11 tolerated(1) benign(0.037) TCGA-3A-A9J0-01 16 1246017 1246017 G A CACNA1H Missense_Mutation p.V213M 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-3A-A9J0-01 16 23119457 23119457 A G USP31 Silent p.H227H 0.18 TCGA-3A-A9J0-01 16 25251421 25251421 A C ZKSCAN2 Missense_Mutation p.F874V 0.14 deleterious(0) possibly_damaging(0.846) TCGA-3A-A9J0-01 16 28841228 28841228 C T ATXN2L Missense_Mutation p.R295C 0.18 deleterious(0) probably_damaging(0.999) TCGA-3A-A9J0-01 16 30366159 30366159 G A CD2BP2 Intron 0.18 TCGA-3A-A9J0-01 16 30393182 30393182 G A SEPT1 Silent p.A73A 0.03 TCGA-3A-A9J0-01 16 56904081 56904081 C T SLC12A3 Silent p.F225F 0.16 TCGA-3A-A9J0-01 16 708985 708985 C G WDR90 Silent p.L995L 0.04 TCGA-3A-A9J0-01 16 72132878 72132878 A T DHX38 Nonsense_Mutation p.K273* 0.34 TCGA-3A-A9J0-01 16 89764252 89764252 C T SPATA2L Silent p.A255A 0.35 TCGA-3A-A9J0-01 17 1538332 1538332 C T SCARF1 Missense_Mutation p.R738Q 0.16 tolerated(0.54) benign(0.014) TCGA-3A-A9J0-01 17 37842172 37842172 C A PGAP3 Intron 0.09 TCGA-3A-A9J0-01 17 7578370 7578370 C T TP53 Splice_Site p.X187_splice 0.42 TCGA-3A-A9J0-01 18 52899837 52899837 C T TCF4 Missense_Mutation p.E620K 0.28 tolerated(0.64) possibly_damaging(0.661) TCGA-3A-A9J0-01 18 59912054 59912054 G A KIAA1468 Missense_Mutation p.D560N 0.34 tolerated(0.13) probably_damaging(0.917) TCGA-3A-A9J0-01 18 60563163 60563163 T G PHLPP1 Missense_Mutation p.L788R 0.29 deleterious(0) probably_damaging(0.999) TCGA-3A-A9J0-01 19 14846902 14846902 C T EMR2 3'UTR 0.22 TCGA-3A-A9J0-01 19 55106342 55106342 C T LILRA1 Missense_Mutation p.R95W 0.22 deleterious(0.02) benign(0.264) TCGA-3A-A9J0-01 19 55450945 55450945 C T NLRP7 Silent p.T414T 0.31 TCGA-3A-A9J0-01 19 55690401 55690401 C T SYT5 Silent p.P3P 0.08 TCGA-3A-A9J0-01 19 758042 758042 C T MISP Missense_Mutation p.R366W 0.38 deleterious(0) probably_damaging(0.998) TCGA-3A-A9J0-01 19 8180474 8180474 C T FBN3 Missense_Mutation p.E1255K 0.22 tolerated(0.06) benign(0.089) TCGA-3A-A9J0-01 19 9225729 9225729 C T OR7G1 Silent p.A237A 0.25 TCGA-3A-A9J0-01 19 9764114 9764114 G T ZNF562 Missense_Mutation p.N264K 0.07 tolerated(0.35) benign(0) TCGA-3A-A9J0-01 1 12908073 12908073 T C HNRNPCL1 Missense_Mutation p.N24D 0.06 deleterious(0) benign(0.349) TCGA-3A-A9J0-01 1 153520200 153520200 C A S100A3 Missense_Mutation p.E88D 0.15 tolerated(0.68) benign(0.006) TCGA-3A-A9J0-01 1 156012004 156012004 G A UBQLN4 Silent p.F430F 0.12 TCGA-3A-A9J0-01 1 163317716 163317716 G A NUF2 Missense_Mutation p.R371H 0.14 tolerated(0.2) benign(0.016) TCGA-3A-A9J0-01 1 186030997 186030997 C T HMCN1 Missense_Mutation p.R2443W 0.18 probably_damaging(0.999) TCGA-3A-A9J0-01 1 197072286 197072286 C T ASPM Missense_Mutation p.R2032H 0.20 deleterious(0.01) possibly_damaging(0.843) TCGA-3A-A9J0-01 1 223175862 223175862 G A DISP1 Missense_Mutation p.V375I 0.32 tolerated(0.14) benign(0.258) TCGA-3A-A9J0-01 1 227223274 227223274 G A CDC42BPA Silent p.N1043N 0.16 TCGA-3A-A9J0-01 1 228246856 228246856 G A WNT3A Missense_Mutation p.R250H 0.14 deleterious(0.01) probably_damaging(0.993) TCGA-3A-A9J0-01 1 248402386 248402386 G T OR2M4 Missense_Mutation p.E52D 0.13 tolerated(1) benign(0.001) TCGA-3A-A9J0-01 1 34092119 34092119 C T CSMD2 Missense_Mutation p.A1715T 0.16 tolerated(0.23) benign(0.008) TCGA-3A-A9J0-01 1 41976495 41976495 C T HIVEP3 Missense_Mutation p.G2283E 0.19 benign(0.01) TCGA-3A-A9J0-01 1 85124124 85124124 C T SSX2IP Missense_Mutation p.G319R 0.07 tolerated(0.17) possibly_damaging(0.784) TCGA-3A-A9J0-01 20 30795736 30795736 C T POFUT1 5'UTR 0.60 TCGA-3A-A9J0-01 20 3128938 3128938 C T FASTKD5 Missense_Mutation p.R260K 0.13 tolerated(0.34) benign(0.035) TCGA-3A-A9J0-01 20 33586211 33586212 AC - MYH7B Frame_Shift_Del p.Q1330Dfs*60 0.26 TCGA-3A-A9J0-01 20 37536753 37536753 C T PPP1R16B Missense_Mutation p.R371W 0.14 deleterious(0) possibly_damaging(0.517) TCGA-3A-A9J0-01 20 44685140 44685142 AGA - SLC12A5 In_Frame_Del p.K1040del 0.14 TCGA-3A-A9J0-01 21 41710288 41710288 C T DSCAM Missense_Mutation p.R508Q 0.41 deleterious(0.04) probably_damaging(0.993) TCGA-3A-A9J0-01 21 47545822 47545822 C T COL6A2 Missense_Mutation p.A698V 0.24 deleterious(0.05) probably_damaging(0.999) TCGA-3A-A9J0-01 22 22277807 22277807 G A PPM1F Silent p.A341A 0.24 TCGA-3A-A9J0-01 22 30722767 30722767 G A TBC1D10A Missense_Mutation p.T35I 0.15 tolerated(0.19) benign(0.002) TCGA-3A-A9J0-01 2 109092224 109092224 A G GCC2 Missense_Mutation p.E993G 0.26 deleterious(0) probably_damaging(0.994) TCGA-3A-A9J0-01 2 113514074 113514074 A G CKAP2L Missense_Mutation p.S292P 0.29 tolerated(0.08) benign(0.045) TCGA-3A-A9J0-01 2 133402714 133402714 C G GPR39 Missense_Mutation p.N299K 0.24 tolerated(0.13) probably_damaging(0.963) TCGA-3A-A9J0-01 2 220080843 220080843 G A ABCB6 Missense_Mutation p.R344W 0.17 tolerated(0.09) possibly_damaging(0.773) TCGA-3A-A9J0-01 2 241697827 241697827 G A KIF1A Silent p.T844T 0.10 TCGA-3A-A9J0-01 2 242065640 242065640 C T PASK Missense_Mutation p.S897N 0.30 tolerated(0.68) probably_damaging(0.973) TCGA-3A-A9J0-01 3 108172884 108172884 G A MYH15 Nonsense_Mutation p.R810* 0.13 TCGA-3A-A9J0-01 3 186276243 186276243 G A TBCCD1 Missense_Mutation p.S152F 0.29 tolerated(0.09) benign(0.439) TCGA-3A-A9J0-01 3 186518951 186518951 C T RFC4 Silent p.Q55Q 0.17 TCGA-3A-A9J0-01 3 36547239 36547239 G A STAC Missense_Mutation p.G278E 0.29 tolerated(1) benign(0.003) TCGA-3A-A9J0-01 3 36779648 36779648 T C DCLK3 Missense_Mutation p.K168R 0.31 tolerated(0.6) benign(0.003) TCGA-3A-A9J0-01 3 41266136 41266136 T C CTNNB1 Missense_Mutation p.S45P 0.32 deleterious(0) probably_damaging(0.939) TCGA-3A-A9J0-01 3 46728567 46728567 C T ALS2CL Missense_Mutation p.G147D 0.25 tolerated(0.54) benign(0.018) TCGA-3A-A9J0-01 3 4718357 4718357 C T ITPR1 Missense_Mutation p.R932W 0.24 tolerated(0.1) probably_damaging(0.998) TCGA-3A-A9J0-01 4 125599951 125599952 - A ANKRD50 Frame_Shift_Ins p.T208Yfs*16 0.31 TCGA-3A-A9J0-01 4 151160950 151160950 G A DCLK2 Silent p.A558A 0.06 TCGA-3A-A9J0-01 4 153750783 153750783 A G ARFIP1 5'UTR 0.16 TCGA-3A-A9J0-01 4 57244478 57244482 TTTTA - AASDH Frame_Shift_Del p.I167Kfs*5 0.21 TCGA-3A-A9J0-01 4 88243945 88243945 A G HSD17B13 Missense_Mutation p.S17P 0.18 tolerated(0.19) unknown(0) TCGA-3A-A9J0-01 5 128863477 128863477 C T ADAMTS19 Nonsense_Mutation p.Q369* 0.56 TCGA-3A-A9J0-01 5 134907476 134907476 A T CXCL14 3'UTR 0.53 TCGA-3A-A9J0-01 5 140552501 140552501 G A PCDHB7 Missense_Mutation p.E29K 0.20 deleterious_low_confidence(0.04) benign(0.103) TCGA-3A-A9J0-01 5 43040202 43040202 C T ANXA2R 5'UTR 0.18 TCGA-3A-A9J0-01 5 71494871 71494871 C T MAP1B Missense_Mutation p.R1897W 0.60 probably_damaging(0.983) TCGA-3A-A9J0-01 5 71495084 71495084 G A MAP1B Missense_Mutation p.E1968K 0.18 possibly_damaging(0.649) TCGA-3A-A9J0-01 5 94922345 94922346 - A ARSK Frame_Shift_Ins p.N262Kfs*12 0.37 TCGA-3A-A9J0-01 6 112496518 112496518 C T LAMA4 Missense_Mutation p.E452K 0.41 tolerated(0.45) benign(0.2) TCGA-3A-A9J0-01 6 137524778 137524778 C A IFNGR1 Missense_Mutation p.E197D 0.33 tolerated(0.25) benign(0.015) TCGA-3A-A9J0-01 6 161006101 161006101 C T LPA Silent p.R1422R 0.34 TCGA-3A-A9J0-01 6 30955236 30955236 C T MUC21 Silent p.T428T 0.14 TCGA-3A-A9J0-01 6 32063700 32063700 C T TNXB Missense_Mutation p.G644S 0.22 probably_damaging(0.994) TCGA-3A-A9J0-01 6 84233890 84233890 G A PRSS35 Missense_Mutation p.E244K 0.18 tolerated(0.43) benign(0.054) TCGA-3A-A9J0-01 6 93956606 93956606 C T EPHA7 Missense_Mutation p.R877H 0.32 deleterious(0) probably_damaging(0.999) TCGA-3A-A9J0-01 7 32526806 32526806 A G LSM5 3'UTR 0.29 TCGA-3A-A9J0-01 7 42018305 42018305 C T GLI3 Missense_Mutation p.V514M 0.30 deleterious(0) possibly_damaging(0.681) TCGA-3A-A9J0-01 7 45699701 45699701 G A ADCY1 Silent p.P456P 0.32 TCGA-3A-A9J0-01 7 71142270 71142270 G A WBSCR17 Silent p.P493P 0.02 TCGA-3A-A9J0-01 8 20107374 20107374 G A LZTS1 Silent p.Y550Y 0.23 TCGA-3A-A9J0-01 8 88886262 88886262 C G DCAF4L2 5'UTR 0.19 TCGA-3A-A9J0-01 9 27158047 27158047 G T TEK Nonsense_Mutation p.E91* 0.23 TCGA-3A-A9J0-01 9 77376995 77376995 C T TRPM6 Missense_Mutation p.R1531H 0.20 tolerated_low_confidence(0.62) benign(0.001) TCGA-3A-A9J0-01 9 95869990 95869990 G A C9orf89 Silent p.T14T 0.42 TCGA-3A-A9J0-01 X 34657384 34657384 G A TMEM47 Missense_Mutation p.A116V 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-3A-A9J0-01 Y 4968431 4968431 G C PCDH11Y Missense_Mutation p.D938H 0.44 deleterious(0) possibly_damaging(0.668) TCGA-3E-AAAY-01 10 43701485 43701485 C T RASGEF1A Missense_Mutation p.R27H 0.11 tolerated(0.11) benign(0.002) TCGA-3E-AAAY-01 10 64005797 64005797 T C RTKN2 Missense_Mutation p.K93E 0.03 tolerated(0.42) benign(0.008) TCGA-3E-AAAY-01 11 2154783 2154783 G A IGF2 Silent p.S146S 0.08 TCGA-3E-AAAY-01 11 2182109 2182109 G A INS-IGF2 Silent p.C31C 0.04 TCGA-3E-AAAY-01 11 34218927 34218927 C A ABTB2 Nonsense_Mutation p.E397* 0.04 TCGA-3E-AAAY-01 12 49950199 49950199 T C KCNH3 Missense_Mutation p.F839L 0.04 deleterious(0.01) benign(0.39) TCGA-3E-AAAY-01 13 103343178 103343178 C T METTL21C Silent p.A89A 0.11 TCGA-3E-AAAY-01 13 98671972 98671972 G T IPO5 Missense_Mutation p.V1010F 0.07 tolerated(0.07) benign(0.045) TCGA-3E-AAAY-01 16 29819148 29819148 C T MAZ Missense_Mutation p.R348W 0.08 deleterious(0) probably_damaging(0.942) TCGA-3E-AAAY-01 16 70254632 70254632 A T FKSG63 5'Flank 0.22 TCGA-3E-AAAY-01 16 84218620 84218620 A T TAF1C 5'UTR 0.09 TCGA-3E-AAAY-01 17 7577058 7577058 C A TP53 Nonsense_Mutation p.E294* 0.10 TCGA-3E-AAAY-01 18 44268880 44268880 G C ST8SIA5 Missense_Mutation p.S105C 0.03 possibly_damaging(0.687) TCGA-3E-AAAY-01 19 17412369 17412369 G A ABHD8 Silent p.N19N 0.10 TCGA-3E-AAAY-01 19 51647799 51647799 C G SIGLEC7 Silent p.S190S 0.05 TCGA-3E-AAAY-01 19 52448449 52448449 G A ZNF613 Missense_Mutation p.S438N 0.07 deleterious(0.05) benign(0.093) TCGA-3E-AAAY-01 19 55501405 55501405 C T NLRP2 Silent p.S794S 0.08 TCGA-3E-AAAY-01 19 7735211 7735211 G A RETN Silent p.A101A 0.09 TCGA-3E-AAAY-01 19 9213690 9213690 G A OR7G2 Missense_Mutation p.T98M 0.06 deleterious(0.03) possibly_damaging(0.493) TCGA-3E-AAAY-01 1 21071440 21071440 C T HP1BP3 Silent p.T504T 0.03 TCGA-3E-AAAY-01 1 47685731 47685731 C T TAL1 Silent p.P219P 0.06 TCGA-3E-AAAY-01 20 29965177 29965177 C T DEFB118 3'Flank 0.05 TCGA-3E-AAAY-01 21 45478983 45478983 G A TRAPPC10 Splice_Site p.X227_splice 0.05 TCGA-3E-AAAY-01 2 234229331 234229331 C T SAG Silent p.I79I 0.10 TCGA-3E-AAAY-01 3 102196331 102196331 G A ZPLD1 Missense_Mutation p.A389T 0.04 deleterious(0.01) benign(0.368) TCGA-3E-AAAY-01 3 7728108 7728108 A C GRM7 Intron 0.06 TCGA-3E-AAAY-01 4 15627448 15627448 A G FBXL5 Missense_Mutation p.I426T 0.09 tolerated_low_confidence(0.58) benign(0.001) TCGA-3E-AAAY-01 4 77700356 77700356 G T SHROOM3 3'UTR 0.05 TCGA-3E-AAAY-01 5 137777145 137777145 C T REEP2 Silent p.L59L 0.05 TCGA-3E-AAAY-01 5 140481822 140481822 G A PCDHB3 Missense_Mutation p.R530H 0.07 tolerated_low_confidence(0.25) benign(0.003) TCGA-3E-AAAY-01 5 179548100 179548100 A C RASGEF1C Missense_Mutation p.F255C 0.05 deleterious(0) probably_damaging(0.994) TCGA-3E-AAAY-01 7 72892025 72892025 T G BAZ1B Missense_Mutation p.N589T 0.07 tolerated(0.61) benign(0) TCGA-3E-AAAY-01 8 68334690 68334690 T A CPA6 3'UTR 0.10 TCGA-3E-AAAY-01 8 77767067 77767067 A G ZFHX4 Missense_Mutation p.H2637R 0.06 probably_damaging(0.964) TCGA-3E-AAAY-01 9 101891209 101891209 C T TGFBR1 Missense_Mutation p.S57F 0.08 deleterious(0.01) benign(0.327) TCGA-3E-AAAY-01 9 21974747 21974747 T - CDKN2A Frame_Shift_Del p.E27Gfs*26 0.09 TCGA-3E-AAAY-01 9 34381395 34381395 A T C9orf24 Silent p.P148P 0.08 TCGA-3E-AAAY-01 X 99925874 99925874 C T SRPX2 Missense_Mutation p.R430C 0.14 deleterious(0) probably_damaging(0.999) TCGA-3E-AAAZ-01 10 135170216 135170216 G A FUOM Silent p.S84S 0.31 TCGA-3E-AAAZ-01 11 108117798 108117798 C T ATM Missense_Mutation p.R337C 0.17 deleterious(0) probably_damaging(0.999) TCGA-3E-AAAZ-01 11 18738405 18738405 C A IGSF22 Missense_Mutation p.K372N 0.19 deleterious(0) possibly_damaging(0.805) TCGA-3E-AAAZ-01 11 56237502 56237502 T C OR5M3 Missense_Mutation p.T158A 0.19 tolerated(0.19) possibly_damaging(0.6) TCGA-3E-AAAZ-01 11 76063580 76063580 A G PRKRIR Missense_Mutation p.L205P 0.21 deleterious(0) probably_damaging(0.995) TCGA-3E-AAAZ-01 12 110815272 110815272 T C ANAPC7 Missense_Mutation p.K462R 0.21 deleterious(0.03) possibly_damaging(0.535) TCGA-3E-AAAZ-01 12 113906184 113906184 C G LHX5 Missense_Mutation p.L141F 0.21 deleterious(0.02) possibly_damaging(0.535) TCGA-3E-AAAZ-01 12 124326011 124326011 C T DNAH10 Missense_Mutation p.T1642M 0.17 benign(0.298) TCGA-3E-AAAZ-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.15 deleterious(0) possibly_damaging(0.479) TCGA-3E-AAAZ-01 12 63543857 63543857 G A AVPR1A Missense_Mutation p.R254C 0.20 tolerated(0.06) benign(0.022) TCGA-3E-AAAZ-01 13 109777647 109777647 C T MYO16 Silent p.N1219N 0.15 TCGA-3E-AAAZ-01 14 66209165 66209165 C T FUT8 3'UTR 0.21 TCGA-3E-AAAZ-01 14 77846757 77846757 G A SAMD15 Missense_Mutation p.R574Q 0.18 tolerated(0.3) benign(0.089) TCGA-3E-AAAZ-01 14 80668531 80668531 T A DIO2 3'Flank 0.23 TCGA-3E-AAAZ-01 15 40756141 40756141 C G BAHD1 Missense_Mutation p.L633V 0.24 tolerated(0.08) benign(0.39) TCGA-3E-AAAZ-01 15 77906745 77906745 C T LINGO1 Missense_Mutation p.A502T 0.09 tolerated(0.07) possibly_damaging(0.848) TCGA-3E-AAAZ-01 16 1962193 1962193 G A HS3ST6 Nonsense_Mutation p.R112* 0.22 TCGA-3E-AAAZ-01 16 30581656 30581656 G A ZNF688 Missense_Mutation p.R138C 0.20 tolerated(0.13) benign(0.258) TCGA-3E-AAAZ-01 16 57153169 57153169 G A CPNE2 Nonsense_Mutation p.W190* 0.16 TCGA-3E-AAAZ-01 17 40714982 40714982 G A COASY Silent p.V143V 0.09 TCGA-3E-AAAZ-01 17 42225373 42225373 C T C17orf53 Missense_Mutation p.P68S 0.20 tolerated(0.18) benign(0.046) TCGA-3E-AAAZ-01 17 56440904 56440904 G A RNF43 Nonsense_Mutation p.R145* 0.20 TCGA-3E-AAAZ-01 18 45368211 45368211 G C SMAD2 Nonsense_Mutation p.S464* 0.21 TCGA-3E-AAAZ-01 18 48591889 48591889 A C SMAD4 Missense_Mutation p.D351A 0.22 deleterious(0) probably_damaging(1) TCGA-3E-AAAZ-01 19 33183406 33183406 G C NUDT19 Silent p.R180R 0.24 TCGA-3E-AAAZ-01 19 37118421 37118421 C T ZNF382 Missense_Mutation p.T541I 0.14 tolerated(1) benign(0.057) TCGA-3E-AAAZ-01 19 37676154 37676154 C T ZNF585B Missense_Mutation p.S762N 0.19 tolerated(0.45) benign(0.001) TCGA-3E-AAAZ-01 19 46307696 46307696 C T RSPH6A Silent p.S489S 0.05 TCGA-3E-AAAZ-01 19 55147980 55147980 G A LILRB1 Silent p.T563T 0.12 TCGA-3E-AAAZ-01 19 55494938 55494938 G A NLRP2 Silent p.Q624Q 0.22 TCGA-3E-AAAZ-01 1 193111023 193111023 A G CDC73 Missense_Mutation p.K186E 0.15 deleterious(0.01) probably_damaging(0.957) TCGA-3E-AAAZ-01 1 193172923 193172949 AGGAGGGTGCATCTGCCCGGAAGACTC - CDC73 Splice_Site p.X325_splice 0.10 TCGA-3E-AAAZ-01 1 205273036 205273036 C T NUAK2 Missense_Mutation p.V477M 0.11 tolerated(0.26) probably_damaging(0.94) TCGA-3E-AAAZ-01 1 233114000 233114000 C G NTPCR 3'UTR 0.36 TCGA-3E-AAAZ-01 1 247587616 247587616 G A NLRP3 Missense_Mutation p.V291M 0.36 tolerated(0.13) benign(0.152) TCGA-3E-AAAZ-01 1 3411193 3411193 C T MEGF6 Silent p.G1328G 0.19 TCGA-3E-AAAZ-01 20 13846127 13846127 C T SEL1L2 Intron 0.04 TCGA-3E-AAAZ-01 20 1961195 1961195 C T PDYN Missense_Mutation p.R180H 0.18 deleterious(0) probably_damaging(0.999) TCGA-3E-AAAZ-01 21 30693720 30693720 T C BACH1 Missense_Mutation p.V40A 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-3E-AAAZ-01 22 30976083 30976083 G T PES1 Missense_Mutation p.Q376K 0.20 deleterious(0.01) probably_damaging(0.926) TCGA-3E-AAAZ-01 2 11780474 11780474 G A GREB1 Missense_Mutation p.R1915H 0.18 deleterious(0) probably_damaging(0.999) TCGA-3E-AAAZ-01 2 241737207 241737207 G T KIF1A 5'UTR 0.18 TCGA-3E-AAAZ-01 2 242625239 242625239 C T DTYMK Missense_Mutation p.D62N 0.20 tolerated(0.81) benign(0.004) TCGA-3E-AAAZ-01 3 100951770 100951770 A T IMPG2 Missense_Mutation p.W1030R 0.22 deleterious(0.02) possibly_damaging(0.561) TCGA-3E-AAAZ-01 3 130361862 130361862 G A COL6A6 Missense_Mutation p.R1741H 0.13 tolerated(1) benign(0) TCGA-3E-AAAZ-01 3 38103746 38103746 G T DLEC1 Missense_Mutation p.D254Y 0.07 deleterious(0.04) benign(0.007) TCGA-3E-AAAZ-01 3 439920 439920 C T CHL1 Silent p.I1035I 0.17 TCGA-3E-AAAZ-01 3 46026472 46026472 C A FYCO1 5'UTR 0.22 TCGA-3E-AAAZ-01 3 99569205 99569205 G A FILIP1L Nonsense_Mutation p.Q439* 0.17 TCGA-3E-AAAZ-01 4 123283432 123283432 G T KIAA1109 3'UTR 0.20 TCGA-3E-AAAZ-01 5 140175222 140175222 A G PCDHA2 Missense_Mutation p.T225A 0.17 deleterious_low_confidence(0) benign(0.113) TCGA-3E-AAAZ-01 5 156590130 156590130 G T FAM71B Silent p.T382T 0.04 TCGA-3E-AAAZ-01 5 54423083 54423083 A - CDC20B Splice_Site p.X330_splice 0.17 TCGA-3E-AAAZ-01 6 117113727 117113727 C T GPRC6A Missense_Mutation p.G787S 0.17 tolerated(0.48) possibly_damaging(0.486) TCGA-3E-AAAZ-01 6 158922970 158922970 G A TULP4 Missense_Mutation p.G759R 0.06 deleterious_low_confidence(0) possibly_damaging(0.716) TCGA-3E-AAAZ-01 7 126173814 126173814 C G GRM8 Missense_Mutation p.C541S 0.18 deleterious(0) possibly_damaging(0.885) TCGA-3E-AAAZ-01 7 131012625 131012625 A G MKLN1 5'UTR 0.17 TCGA-3E-AAAZ-01 7 77230064 77230064 G A PTPN12 Missense_Mutation p.M212I 0.22 deleterious(0) benign(0.163) TCGA-3E-AAAZ-01 8 104225200 104225200 G A BAALC Missense_Mutation p.G72S 0.18 tolerated(0.72) benign(0.09) TCGA-3E-AAAZ-01 9 125315452 125315452 G T OR1N2 Nonsense_Mutation p.E2* 0.20 TCGA-3E-AAAZ-01 9 139795034 139795034 C T TRAF2 Intron 0.21 TCGA-3E-AAAZ-01 9 139917290 139917290 G A ABCA2 Silent p.D101D 0.24 TCGA-3E-AAAZ-01 9 141014657 141014657 C T CACNA1B Missense_Mutation p.T2024M 0.33 tolerated(0.06) benign(0.339) TCGA-3E-AAAZ-01 9 97843044 97843044 G T C9orf3 Missense_Mutation p.R767S 0.14 tolerated(0.18) benign(0.11) TCGA-3E-AAAZ-01 X 114082716 114082716 C T HTR2C Missense_Mutation p.S167L 0.28 deleterious(0) probably_damaging(0.961) TCGA-3E-AAAZ-01 X 295027 295027 G A PPP2R3B 3'UTR 0.31 TCGA-F2-6879-01 11 406437 406439 GTC - SIGIRR In_Frame_Del p.D327del 0.43 TCGA-F2-6879-01 11 66190209 66190209 A T NPAS4 Missense_Mutation p.K165N 0.33 deleterious(0.04) probably_damaging(0.948) TCGA-F2-6879-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.43 deleterious(0) possibly_damaging(0.479) TCGA-F2-6879-01 13 47466615 47466615 C T HTR2A Missense_Mutation p.V175I 0.33 tolerated(1) benign(0.015) TCGA-F2-6879-01 14 79746678 79746678 C T NRXN3 Intron 0.05 TCGA-F2-6879-01 15 35084689 35084689 C T ACTC1 Missense_Mutation p.R179H 0.25 deleterious_low_confidence(0.05) probably_damaging(0.911) TCGA-F2-6879-01 16 50666302 50666302 C T NKD1 Missense_Mutation p.T269M 0.36 deleterious(0) probably_damaging(0.94) TCGA-F2-6879-01 17 18668178 18668178 T C FBXW10 Splice_Site p.X519_splice 0.46 TCGA-F2-6879-01 17 42332022 42332022 C T SLC4A1 Silent p.S633S 0.49 TCGA-F2-6879-01 17 43192471 43192471 G A PLCD3 Missense_Mutation p.R567W 0.09 deleterious(0.01) benign(0.139) TCGA-F2-6879-01 17 4458561 4458561 G A MYBBP1A Missense_Mutation p.A20V 0.56 tolerated(0.37) benign(0.023) TCGA-F2-6879-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.46 deleterious(0) probably_damaging(1) TCGA-F2-6879-01 18 6943188 6943188 C T LAMA1 Missense_Mutation p.G3020S 0.32 deleterious(0) possibly_damaging(0.896) TCGA-F2-6879-01 19 48918276 48918276 G C GRIN2D Missense_Mutation p.G523A 0.29 deleterious(0) probably_damaging(0.964) TCGA-F2-6879-01 19 57286068 57286068 G A ZIM2 Silent p.C524C 0.25 TCGA-F2-6879-01 1 16069389 16069389 G A TMEM82 Missense_Mutation p.V50M 0.06 deleterious(0.01) possibly_damaging(0.833) TCGA-F2-6879-01 1 167095421 167095421 C T DUSP27 Silent p.Y351Y 0.22 TCGA-F2-6879-01 1 193150555 193150555 A C B3GALT2 Missense_Mutation p.H46Q 0.06 tolerated_low_confidence(1) benign(0.001) TCGA-F2-6879-01 1 221057767 221057767 G A HLX Silent p.G396G 0.31 TCGA-F2-6879-01 1 228479741 228479741 C T OBSCN Silent p.Y3923Y 0.07 TCGA-F2-6879-01 1 38079563 38079563 C T RSPO1 Silent p.A146A 0.33 TCGA-F2-6879-01 1 74715181 74715181 G A FPGT-TNNI3K Missense_Mutation p.R177H 0.28 tolerated(0.07) possibly_damaging(0.809) TCGA-F2-6879-01 20 62838994 62838994 G A MYT1 Missense_Mutation p.A149T 0.24 benign(0.032) TCGA-F2-6879-01 21 46925862 46925862 C A COL18A1 Missense_Mutation p.N1246K 0.26 benign(0.277) TCGA-F2-6879-01 2 179193055 179193055 G A OSBPL6 Missense_Mutation p.E90K 0.06 tolerated(0.15) probably_damaging(0.997) TCGA-F2-6879-01 2 207174767 207174767 G A ZDBF2 Missense_Mutation p.D1839N 0.33 tolerated(0.22) possibly_damaging(0.539) TCGA-F2-6879-01 3 151160955 151160955 C T IGSF10 Missense_Mutation p.R1927Q 0.33 deleterious(0) probably_damaging(0.998) TCGA-F2-6879-01 3 169644398 169644398 C T SAMD7 Silent p.P116P 0.31 TCGA-F2-6879-01 3 194062372 194062372 G A CPN2 Missense_Mutation p.P354S 0.33 tolerated(0.33) benign(0.065) TCGA-F2-6879-01 3 42950359 42950359 C T ZNF662 Missense_Mutation p.R97W 0.31 tolerated(0.47) benign(0.002) TCGA-F2-6879-01 4 126241496 126241502 CAATACC - FAT4 Frame_Shift_Del p.N1311Lfs*16 0.26 TCGA-F2-6879-01 4 1985370 1985370 G A NELFA Missense_Mutation p.T463M 0.12 deleterious(0) probably_damaging(0.968) TCGA-F2-6879-01 5 149677192 149677192 C T ARSI Missense_Mutation p.G432D 0.36 tolerated(0.05) probably_damaging(0.999) TCGA-F2-6879-01 5 180039610 180039610 G A FLT4 Missense_Mutation p.R1145C 0.05 deleterious(0.02) benign(0.032) TCGA-F2-6879-01 5 32364367 32364367 T C ZFR Silent p.L950L 0.38 TCGA-F2-6879-01 5 38337656 38337656 C T EGFLAM Silent p.G44G 0.20 TCGA-F2-6879-01 6 44254103 44254103 G A TCTE1 Silent p.G148G 0.43 TCGA-F2-6879-01 6 73043409 73043409 G A RIMS1 Missense_Mutation p.G1413S 0.45 deleterious(0) possibly_damaging(0.746) TCGA-F2-6879-01 8 106815014 106815014 C T ZFPM2 Nonsense_Mutation p.R902* 0.28 TCGA-F2-6879-01 8 110131289 110131289 C T TRHR Silent p.L268L 0.24 TCGA-F2-6879-01 8 124664206 124664206 G A KLHL38 Missense_Mutation p.R321W 0.26 deleterious(0) benign(0.131) TCGA-F2-6879-01 8 15967630 15967630 T C MSR1 Silent p.S440S 0.52 TCGA-F2-6879-01 8 94767364 94767364 A G TMEM67 Silent p.R74R 0.45 TCGA-F2-6879-01 9 137674564 137674564 C T COL5A1 Missense_Mutation p.R828W 0.29 unknown(0) TCGA-F2-6879-01 9 21974768 21974775 GCGGCCGT - CDKN2A Frame_Shift_Del p.T18Gfs*23 0.39 TCGA-F2-6879-01 X 148037698 148037698 G A AFF2 Missense_Mutation p.R708Q 0.63 deleterious(0) probably_damaging(0.994) TCGA-F2-7273-01 10 76789141 76789141 G C KAT6B Missense_Mutation p.S1520T 0.03 benign(0.043) TCGA-F2-7273-01 16 15029047 15029047 G A NPIPA1 5'Flank 0.25 TCGA-F2-7273-01 16 30206149 30206149 G A SULT1A3 5'Flank 0.11 TCGA-F2-7273-01 3 50138136 50138137 - T RBM5 Intron 0.17 TCGA-F2-A44G-01 10 103348197 103348197 C T DPCD Intron 0.20 TCGA-F2-A44G-01 10 125426350 125426350 G A GPR26 Missense_Mutation p.A143T 0.14 tolerated(0.41) benign(0.028) TCGA-F2-A44G-01 10 125506294 125506294 G A CPXM2 Nonsense_Mutation p.R753* 0.14 TCGA-F2-A44G-01 11 102708080 102708080 C A MMP3 Nonsense_Mutation p.E428* 0.10 TCGA-F2-A44G-01 11 5364521 5364521 C T OR51B5 Silent p.T78T 0.13 TCGA-F2-A44G-01 11 63520109 63520109 T A RTN3 Missense_Mutation p.S957T 0.13 deleterious(0.01) probably_damaging(1) TCGA-F2-A44G-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.14 deleterious(0) benign(0.361) TCGA-F2-A44G-01 12 53170616 53170616 C A KRT76 Nonsense_Mutation p.G154* 0.13 TCGA-F2-A44G-01 14 68274196 68274196 G A ZFYVE26 Missense_Mutation p.R269W 0.16 tolerated(0.19) benign(0.001) TCGA-F2-A44G-01 15 35168180 35168180 C A AQR Missense_Mutation p.A1065S 0.11 deleterious(0) probably_damaging(0.992) TCGA-F2-A44G-01 16 2495532 2495532 G T CCNF Missense_Mutation p.V335L 0.13 deleterious(0.03) probably_damaging(0.989) TCGA-F2-A44G-01 16 9934952 9934952 G T GRIN2A Silent p.T446T 0.13 TCGA-F2-A44G-01 17 10432367 10432367 G A MYH2 Silent p.I1128I 0.14 TCGA-F2-A44G-01 17 11837209 11837209 G A DNAH9 Missense_Mutation p.D4104N 0.14 probably_damaging(1) TCGA-F2-A44G-01 17 36869292 36869292 A G MLLT6 Intron 0.17 TCGA-F2-A44G-01 17 67411092 67411092 T C MAP2K6 5'UTR 0.14 TCGA-F2-A44G-01 19 17943473 17943473 G A JAK3 Silent p.G845G 0.13 TCGA-F2-A44G-01 19 3980040 3980040 G T EEF2 Nonsense_Mutation p.Y457* 0.11 TCGA-F2-A44G-01 19 49447742 49447742 C T DHDH Silent p.H291H 0.14 TCGA-F2-A44G-01 19 56133054 56133054 G A ZNF784 3'UTR 0.17 TCGA-F2-A44G-01 19 56953504 56953504 C T ZNF667 Missense_Mutation p.G287E 0.11 tolerated(0.06) benign(0.272) TCGA-F2-A44G-01 19 57175237 57175237 G A ZNF835 Missense_Mutation p.R444W 0.15 deleterious(0) probably_damaging(0.983) TCGA-F2-A44G-01 1 150921869 150921869 C G SETDB1 Nonsense_Mutation p.S483* 0.13 TCGA-F2-A44G-01 1 165177322 165177322 C T LMX1A Silent p.Q265Q 0.14 TCGA-F2-A44G-01 1 34158555 34158555 C T CSMD2 Missense_Mutation p.E1303K 0.15 deleterious(0.02) probably_damaging(0.916) TCGA-F2-A44G-01 1 98157326 98157326 G A DPYD Missense_Mutation p.P237S 0.18 deleterious(0) benign(0.151) TCGA-F2-A44G-01 20 31604852 31604852 G T BPIFB2 Missense_Mutation p.C174F 0.14 deleterious(0.02) probably_damaging(0.995) TCGA-F2-A44G-01 20 57429663 57429663 A C GNAS Missense_Mutation p.D448A 0.20 tolerated_low_confidence(0.66) unknown(0) TCGA-F2-A44G-01 22 39382043 39382043 C T APOBEC3B Missense_Mutation p.A134V 0.12 tolerated(0.09) probably_damaging(0.984) TCGA-F2-A44G-01 2 110849265 110849265 G A MALL Missense_Mutation p.S63L 0.07 deleterious(0) probably_damaging(0.919) TCGA-F2-A44G-01 2 219678840 219678840 G C CYP27A1 Missense_Mutation p.G372R 0.12 tolerated(0.19) benign(0.094) TCGA-F2-A44G-01 3 123411658 123411658 C T MYLK Silent p.E1163E 0.04 TCGA-F2-A44G-01 3 40498851 40498851 C G RPL14 5'UTR 0.10 TCGA-F2-A44G-01 3 46415541 46415541 A G CCR5 3'UTR 0.14 TCGA-F2-A44G-01 4 119609076 119609076 A G METTL14 Splice_Site p.X23_splice 0.18 TCGA-F2-A44G-01 4 119626803 119626803 G A METTL14 Missense_Mutation p.R298H 0.12 deleterious(0) probably_damaging(0.997) TCGA-F2-A44G-01 4 169374381 169374381 C T DDX60L Missense_Mutation p.R297H 0.12 tolerated(1) benign(0) TCGA-F2-A44G-01 4 82380664 82380667 CTTT - RASGEF1B Intron 0.11 TCGA-F2-A44G-01 4 84342813 84342813 C T HELQ Nonsense_Mutation p.W951* 0.14 TCGA-F2-A44G-01 5 135587384 135587384 G A TRPC7 Missense_Mutation p.T511M 0.14 tolerated(0.09) benign(0.404) TCGA-F2-A44G-01 5 140581425 140581425 C T PCDHB11 Missense_Mutation p.A693V 0.15 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-F2-A44G-01 5 140772668 140772668 C T PCDHGA8 Silent p.C96C 0.03 TCGA-F2-A44G-01 5 14756009 14756009 G A ANKH Silent p.F159F 0.16 TCGA-F2-A44G-01 5 73981215 73981215 C T HEXB Missense_Mutation p.R44W 0.15 deleterious(0.01) benign(0.023) TCGA-F2-A44G-01 5 82818108 82818108 A G VCAN Missense_Mutation p.E1328G 0.14 deleterious(0.03) benign(0.085) TCGA-F2-A44G-01 7 138447711 138447711 C G ATP6V0A4 Missense_Mutation p.L117F 0.15 deleterious(0) probably_damaging(0.943) TCGA-F2-A44G-01 7 150716447 150716447 C T ATG9B Silent p.S326S 0.10 TCGA-F2-A44G-01 7 44841061 44841061 T C PPIA 3'UTR 0.14 TCGA-F2-A44G-01 7 57528950 57528950 A G ZNF716 Silent p.R261R 0.11 TCGA-F2-A44G-01 8 106815377 106815377 G A ZFPM2 Missense_Mutation p.G1023R 0.09 tolerated(0.06) benign(0.263) TCGA-F2-A44G-01 8 1626541 1626541 C T DLGAP2 Missense_Mutation p.A737V 0.13 tolerated(0.29) benign(0.127) TCGA-F2-A44G-01 9 90584165 90584165 C A CDK20 Missense_Mutation p.D263Y 0.14 deleterious(0) possibly_damaging(0.873) TCGA-F2-A44G-01 X 100078981 100078981 C T CSTF2 Missense_Mutation p.P184L 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-F2-A44G-01 X 104463929 104463929 G T TEX13A Missense_Mutation p.T316N 0.13 tolerated(0.07) possibly_damaging(0.788) TCGA-F2-A44G-01 X 40539348 40539348 T - MED14 Frame_Shift_Del p.N883Tfs*11 0.14 TCGA-F2-A44H-01 11 20676316 20676316 C T SLC6A5 Missense_Mutation p.R766C 0.04 deleterious(0) probably_damaging(0.997) TCGA-F2-A44H-01 11 6622389 6622389 G T RRP8 Missense_Mutation p.L303I 0.12 tolerated(0.3) probably_damaging(0.912) TCGA-F2-A44H-01 12 115112388 115112388 G A TBX3 Missense_Mutation p.A451V 0.08 tolerated(0.22) benign(0.001) TCGA-F2-A44H-01 12 6858098 6858098 G A MLF2 Missense_Mutation p.R204W 0.09 deleterious(0.02) benign(0.446) TCGA-F2-A44H-01 14 20019865 20019865 G T POTEM Missense_Mutation p.P119H 0.08 deleterious(0.01) benign(0.004) TCGA-F2-A44H-01 14 23885302 23885302 G C MYH7 Missense_Mutation p.L1622V 0.12 deleterious(0.03) possibly_damaging(0.872) TCGA-F2-A44H-01 14 74874134 74874134 C T SYNDIG1L 3'UTR 0.07 TCGA-F2-A44H-01 17 30615948 30615949 - C RHBDL3 Frame_Shift_Ins p.R146Pfs*4 0.12 TCGA-F2-A44H-01 17 57158534 57158534 T A TRIM37 Missense_Mutation p.H139L 0.05 deleterious(0.03) probably_damaging(0.909) TCGA-F2-A44H-01 18 43833700 43833700 A T C18orf25 Silent p.T312T 0.18 TCGA-F2-A44H-01 18 56274646 56274646 C T ALPK2 Nonsense_Mutation p.W45* 0.14 TCGA-F2-A44H-01 19 17515193 17515193 C A BST2 Silent p.V113V 0.11 TCGA-F2-A44H-01 19 54744909 54744909 G A LILRA6 Silent p.Y251Y 0.05 TCGA-F2-A44H-01 19 5745924 5745924 G A CATSPERD Missense_Mutation p.G220S 0.10 deleterious(0.01) possibly_damaging(0.834) TCGA-F2-A44H-01 1 109883487 109883487 T C SORT1 Missense_Mutation p.T375A 0.16 deleterious(0.01) benign(0.233) TCGA-F2-A44H-01 21 47704430 47704430 C T MCM3AP Silent p.A257A 0.12 TCGA-F2-A44H-01 2 241556456 241556456 A G GPR35 Intron 0.07 TCGA-F2-A44H-01 2 29295765 29295765 G T C2orf71 Missense_Mutation p.P455T 0.06 tolerated(0.62) benign(0.025) TCGA-F2-A44H-01 2 68729986 68729986 T A APLF Missense_Mutation p.F98I 0.13 deleterious(0) probably_damaging(0.999) TCGA-F2-A44H-01 4 140058938 140058938 A T ELF2 5'UTR 0.09 TCGA-F2-A44H-01 5 76349893 76349893 A T AGGF1 Missense_Mutation p.D524V 0.08 tolerated(0.05) benign(0.323) TCGA-F2-A44H-01 6 152651474 152651474 T C SYNE1 Silent p.E4782E 0.04 TCGA-F2-A44H-01 7 37354484 37354484 G A ELMO1 Silent p.A54A 0.08 TCGA-F2-A44H-01 8 37974234 37974234 A T ASH2L Missense_Mutation p.N282Y 0.09 tolerated(0.42) benign(0.126) TCGA-F2-A44H-01 8 52321508 52321508 G C PXDNL Silent p.A892A 0.10 TCGA-F2-A44H-01 9 95610736 95610736 T C ZNF484 Silent p.P113P 0.16 TCGA-F2-A44H-01 X 47045114 47045114 G C RBM10 Splice_Site p.X786_splice 0.21 TCGA-F2-A7TX-01 10 116307515 116307515 C G ABLIM1 Missense_Mutation p.D232H 0.31 deleterious(0) probably_damaging(0.985) TCGA-F2-A7TX-01 10 12870810 12870810 C T CAMK1D Missense_Mutation p.S361L 0.08 deleterious_low_confidence(0.02) benign(0.064) TCGA-F2-A7TX-01 11 108040579 108040579 C T NPAT Missense_Mutation p.V968I 0.09 tolerated(0.19) benign(0.327) TCGA-F2-A7TX-01 11 121023690 121023690 C T TECTA Silent p.C1402C 0.05 TCGA-F2-A7TX-01 11 57177551 57177551 C T SLC43A3 Silent p.S368S 0.09 TCGA-F2-A7TX-01 11 92715454 92715454 G A MTNR1B Silent p.V355V 0.15 TCGA-F2-A7TX-01 11 92715455 92715455 C T MTNR1B Nonsense_Mutation p.Q356* 0.16 TCGA-F2-A7TX-01 12 113645289 113645289 G A IQCD Missense_Mutation p.T228I 0.14 tolerated(0.15) benign(0.047) TCGA-F2-A7TX-01 12 130184899 130184899 G A TMEM132D Missense_Mutation p.R142W 0.15 tolerated(0.14) benign(0.073) TCGA-F2-A7TX-01 12 130921729 130921729 G A RIMBP2 Silent p.G571G 0.31 TCGA-F2-A7TX-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.16 deleterious(0) benign(0.361) TCGA-F2-A7TX-01 12 49433687 49433687 G A KMT2D Silent p.D2622D 0.07 TCGA-F2-A7TX-01 12 49434081 49434082 - C KMT2D Frame_Shift_Ins p.A2491Gfs*15 0.20 TCGA-F2-A7TX-01 13 42273275 42273275 G A VWA8 Missense_Mutation p.H1166Y 0.27 tolerated(0.16) benign(0.002) TCGA-F2-A7TX-01 14 24505740 24505740 G A RP11-468E2.9 RNA 0.13 TCGA-F2-A7TX-01 14 38678945 38678945 C T SSTR1 Silent p.S117S 0.07 TCGA-F2-A7TX-01 14 74968210 74968210 G A LTBP2 Missense_Mutation p.R1752W 0.15 deleterious(0.02) probably_damaging(0.93) TCGA-F2-A7TX-01 15 41226899 41226899 A T DLL4 Missense_Mutation p.N335I 0.05 deleterious(0) probably_damaging(1) TCGA-F2-A7TX-01 15 54306714 54306714 G C UNC13C Missense_Mutation p.Q538H 0.10 deleterious_low_confidence(0) benign(0.017) TCGA-F2-A7TX-01 15 56535410 56535410 T C RFX7 Missense_Mutation p.N25S 0.11 tolerated_low_confidence(0.46) benign(0.001) TCGA-F2-A7TX-01 15 64449137 64449137 G C SNX22 3'UTR 0.17 TCGA-F2-A7TX-01 16 17228362 17228362 C T XYLT1 Silent p.T665T 0.21 TCGA-F2-A7TX-01 16 81479102 81479102 C G CMIP Missense_Mutation p.P86A 0.30 tolerated(0.22) benign(0.168) TCGA-F2-A7TX-01 17 44060673 44060673 G A MAPT Missense_Mutation p.R168H 0.21 tolerated(0.57) benign(0.001) TCGA-F2-A7TX-01 17 46627995 46627995 C T HOXB3 Missense_Mutation p.V333I 0.08 tolerated(0.42) benign(0.001) TCGA-F2-A7TX-01 17 7578260 7578260 C T TP53 Missense_Mutation p.V197M 0.19 deleterious(0.04) probably_damaging(1) TCGA-F2-A7TX-01 19 17313080 17313080 G A MYO9B Missense_Mutation p.G1602S 0.17 tolerated(0.19) benign(0.052) TCGA-F2-A7TX-01 19 38976774 38976774 C T RYR1 Missense_Mutation p.R1827C 0.21 probably_damaging(0.994) TCGA-F2-A7TX-01 19 46915715 46915715 C T CCDC8 Missense_Mutation p.R118H 0.14 benign(0.439) TCGA-F2-A7TX-01 1 11716084 11716084 C T FBXO44 Silent p.P64P 0.14 TCGA-F2-A7TX-01 1 152324100 152324100 G A FLG2 Silent p.A2054A 0.09 TCGA-F2-A7TX-01 1 200613582 200613582 T C DDX59 Missense_Mutation p.K554E 0.08 deleterious(0) possibly_damaging(0.899) TCGA-F2-A7TX-01 1 202935980 202935980 A T CYB5R1 Missense_Mutation p.L21H 0.08 tolerated(0.1) possibly_damaging(0.525) TCGA-F2-A7TX-01 1 205312564 205312564 C T KLHDC8A Missense_Mutation p.D57N 0.08 tolerated(0.67) benign(0.004) TCGA-F2-A7TX-01 1 222885606 222885606 T G AIDA Missense_Mutation p.R18S 0.08 deleterious(0.03) benign(0.016) TCGA-F2-A7TX-01 1 27099479 27099479 G A ARID1A Splice_Site p.X1239_splice 0.14 TCGA-F2-A7TX-01 1 27099947 27099947 C T ARID1A Nonsense_Mutation p.R1276* 0.09 TCGA-F2-A7TX-01 1 38260133 38260133 C A MANEAL Silent p.P93P 0.10 TCGA-F2-A7TX-01 1 43778910 43778910 G A TIE1 Missense_Mutation p.V678I 0.08 tolerated(1) benign(0.004) TCGA-F2-A7TX-01 1 67137671 67137671 C A SGIP1 Missense_Mutation p.L185I 0.08 tolerated(0.4) benign(0.187) TCGA-F2-A7TX-01 20 60585136 60585136 A G TAF4 Missense_Mutation p.V576A 0.08 probably_damaging(0.93) TCGA-F2-A7TX-01 2 26950912 26950912 G A KCNK3 Missense_Mutation p.V221M 0.14 deleterious(0) probably_damaging(1) TCGA-F2-A7TX-01 3 180320015 180320015 A - TTC14 5'UTR 0.17 TCGA-F2-A7TX-01 4 100871402 100871402 T C H2AFZ 5'UTR 0.05 TCGA-F2-A7TX-01 4 123843664 123843664 G T NUDT6 Missense_Mutation p.P22T 0.12 deleterious_low_confidence(0.05) benign(0.021) TCGA-F2-A7TX-01 4 48114421 48114421 G A TXK Missense_Mutation p.P95S 0.15 deleterious(0.02) possibly_damaging(0.874) TCGA-F2-A7TX-01 5 13811871 13811871 G A DNAH5 Missense_Mutation p.S2431F 0.09 benign(0.012) TCGA-F2-A7TX-01 5 140720414 140720414 G A PCDHGA2 Missense_Mutation p.V626M 0.17 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-F2-A7TX-01 5 36608640 36608640 G A SLC1A3 Missense_Mutation p.E39K 0.15 tolerated(0.2) benign(0.002) TCGA-F2-A7TX-01 6 42620364 42620364 C T UBR2 Missense_Mutation p.S917L 0.28 deleterious(0) benign(0.403) TCGA-F2-A7TX-01 7 1026862 1026862 C T CYP2W1 Silent p.G313G 0.15 TCGA-F2-A7TX-01 7 104746087 104746088 - A KMT2E Frame_Shift_Ins p.R802Kfs*8 0.13 TCGA-F2-A7TX-01 7 21611423 21611423 G T DNAH11 Splice_Site p.X476_splice 0.05 TCGA-F2-A7TX-01 7 53104355 53104355 G A POM121L12 3'UTR 0.14 TCGA-F2-A7TX-01 8 133048648 133048648 C - OC90 Intron 0.18 TCGA-F2-A7TX-01 8 139380170 139380170 A T FAM135B Missense_Mutation p.N19K 0.16 deleterious(0) probably_damaging(0.998) TCGA-F2-A7TX-01 9 107367884 107367884 G C OR13C2 Missense_Mutation p.L9V 0.06 tolerated(1) benign(0.008) TCGA-F2-A7TX-01 9 111693455 111693455 A G IKBKAP 5'UTR 0.07 TCGA-F2-A7TX-01 9 137328351 137328351 C T RXRA Missense_Mutation p.S427F 0.24 deleterious(0) probably_damaging(1) TCGA-F2-A8YN-01 11 129722430 129722430 G A TMEM45B Missense_Mutation p.G18E 0.28 deleterious(0) probably_damaging(0.998) TCGA-F2-A8YN-01 11 7437383 7437383 A G SYT9 Silent p.T385T 0.18 TCGA-F2-A8YN-01 12 105464556 105464556 G A ALDH1L2 Missense_Mutation p.P74S 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.513) TCGA-F2-A8YN-01 12 10959184 10959184 C T TAS2R8 Nonsense_Mutation p.W132* 0.05 TCGA-F2-A8YN-01 12 129278570 129278570 G T SLC15A4 3'UTR 0.25 TCGA-F2-A8YN-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.35 deleterious(0.03) benign(0.376) TCGA-F2-A8YN-01 12 26816711 26816712 AT - ITPR2 Frame_Shift_Del p.D540Afs*36 0.36 TCGA-F2-A8YN-01 13 101736104 101736104 G A NALCN Nonsense_Mutation p.R1181* 0.25 TCGA-F2-A8YN-01 13 25255720 25255720 C T ATP12A Silent p.S10S 0.27 TCGA-F2-A8YN-01 13 38211315 38211315 C G TRPC4 Missense_Mutation p.E892Q 0.25 tolerated_low_confidence(0.06) benign(0.01) TCGA-F2-A8YN-01 14 19377838 19377838 C A OR11H12 Missense_Mutation p.S82Y 0.23 deleterious(0) probably_damaging(0.992) TCGA-F2-A8YN-01 14 24517390 24517390 T C LRRC16B 5'Flank 0.31 TCGA-F2-A8YN-01 14 93954015 93954015 C T UNC79 Missense_Mutation p.S32F 0.04 deleterious(0.04) benign(0.293) TCGA-F2-A8YN-01 15 101115212 101115212 T C LINS Missense_Mutation p.D204G 0.12 deleterious(0) probably_damaging(0.981) TCGA-F2-A8YN-01 15 25947218 25947218 C G ATP10A Missense_Mutation p.D869H 0.04 deleterious(0) benign(0.176) TCGA-F2-A8YN-01 15 50528437 50528437 A G SLC27A2 3'UTR 0.10 TCGA-F2-A8YN-01 15 53081647 53081647 C T ONECUT1 Silent p.V145V 0.14 TCGA-F2-A8YN-01 15 64025227 64025227 C T HERC1 Missense_Mutation p.G922R 0.34 benign(0.048) TCGA-F2-A8YN-01 16 24580170 24580170 G T RBBP6 Missense_Mutation p.S720I 0.06 deleterious_low_confidence(0) unknown(0) TCGA-F2-A8YN-01 16 67333359 67333359 G A KCTD19 Missense_Mutation p.P298L 0.24 deleterious(0) probably_damaging(0.999) TCGA-F2-A8YN-01 16 71101253 71101253 G T HYDIN Missense_Mutation p.A672E 0.29 probably_damaging(0.991) TCGA-F2-A8YN-01 17 10209864 10209864 G A MYH13 Missense_Mutation p.T1793M 0.40 deleterious(0.01) benign(0.005) TCGA-F2-A8YN-01 17 21319451 21319451 C T KCNJ12 Missense_Mutation p.S266L 0.23 tolerated(0.05) probably_damaging(0.946) TCGA-F2-A8YN-01 17 38926251 38926251 G A KRT26 Nonsense_Mutation p.Q269* 0.41 TCGA-F2-A8YN-01 17 45669380 45669380 A G NPEPPS Missense_Mutation p.K440R 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-F2-A8YN-01 17 48191617 48191617 G T SAMD14 Silent p.P320P 0.04 TCGA-F2-A8YN-01 17 7578180 7578190 AGGCGGCTCAT - TP53 Frame_Shift_Del p.Y220* 0.33 TCGA-F2-A8YN-01 19 15271444 15271444 C - NOTCH3 3'UTR 0.27 TCGA-F2-A8YN-01 19 17010311 17010311 C T CPAMD8 Missense_Mutation p.R1655H 0.27 deleterious(0.01) probably_damaging(1) TCGA-F2-A8YN-01 19 17057923 17057923 C T CPAMD8 Missense_Mutation p.V922I 0.31 tolerated(0.15) benign(0.271) TCGA-F2-A8YN-01 19 41383142 41383142 G A CYP2A7 Missense_Mutation p.R372C 0.27 deleterious(0) probably_damaging(0.999) TCGA-F2-A8YN-01 1 155408246 155408246 A G ASH1L Silent p.V1900V 0.28 TCGA-F2-A8YN-01 1 156926239 156926239 C T ARHGEF11 Nonsense_Mutation p.W548* 0.02 TCGA-F2-A8YN-01 1 158548759 158548759 T A OR10X1 Nonsense_Mutation p.K311* 0.07 TCGA-F2-A8YN-01 1 166944560 166944560 A C ILDR2 5'UTR 0.29 TCGA-F2-A8YN-01 1 19181067 19181067 G A TAS1R2 Silent p.I299I 0.24 TCGA-F2-A8YN-01 1 36638181 36638181 C T MAP7D1 Missense_Mutation p.R193C 0.29 probably_damaging(0.999) TCGA-F2-A8YN-01 1 37346245 37346245 G A GRIK3 Silent p.D180D 0.03 TCGA-F2-A8YN-01 1 49511348 49511348 G A AGBL4 Missense_Mutation p.P168S 0.22 deleterious(0) probably_damaging(1) TCGA-F2-A8YN-01 1 85575766 85575766 C T WDR63 Silent p.H578H 0.26 TCGA-F2-A8YN-01 20 57613612 57613612 T A SLMO2 Missense_Mutation p.D37V 0.31 deleterious(0) probably_damaging(0.997) TCGA-F2-A8YN-01 22 26164808 26164808 G T MYO18B Missense_Mutation p.V309L 0.35 tolerated_low_confidence(0.51) benign(0.011) TCGA-F2-A8YN-01 22 29445400 29445400 C T ZNRF3 Nonsense_Mutation p.Q411* 0.27 TCGA-F2-A8YN-01 2 120005741 120005741 C T STEAP3 Missense_Mutation p.R337C 0.04 tolerated(0.15) probably_damaging(0.96) TCGA-F2-A8YN-01 2 128466262 128466262 C T WDR33 Missense_Mutation p.R1257Q 0.28 deleterious_low_confidence(0) possibly_damaging(0.602) TCGA-F2-A8YN-01 2 141200074 141200074 G A LRP1B Silent p.C3471C 0.03 TCGA-F2-A8YN-01 2 219414540 219414540 C A USP37 Missense_Mutation p.D141Y 0.20 deleterious(0) possibly_damaging(0.526) TCGA-F2-A8YN-01 2 231174695 231174695 C T SP140 Silent p.C705C 0.23 TCGA-F2-A8YN-01 2 43768407 43768407 C T THADA Missense_Mutation p.C1052Y 0.26 deleterious(0) probably_damaging(0.996) TCGA-F2-A8YN-01 2 60688454 60688454 G A BCL11A Silent p.G531G 0.05 TCGA-F2-A8YN-01 3 123046467 123046467 G A ADCY5 Missense_Mutation p.R649W 0.44 deleterious(0) probably_damaging(0.95) TCGA-F2-A8YN-01 3 123419230 123419230 C T MYLK Missense_Mutation p.A1029T 0.26 tolerated(0.23) benign(0.409) TCGA-F2-A8YN-01 3 187387014 187387014 C T SST Missense_Mutation p.E64K 0.16 tolerated(0.16) benign(0.012) TCGA-F2-A8YN-01 3 78666996 78666996 G A ROBO1 Silent p.S1357S 0.04 TCGA-F2-A8YN-01 3 78666997 78666997 G T ROBO1 Missense_Mutation p.S1357Y 0.04 deleterious(0) probably_damaging(0.982) TCGA-F2-A8YN-01 5 140530477 140530477 G A PCDHB6 Silent p.A213A 0.30 TCGA-F2-A8YN-01 5 140795043 140795043 G A PCDHGA10 Silent p.S767S 0.18 TCGA-F2-A8YN-01 5 168195164 168195164 G A SLIT3 Intron 0.04 TCGA-F2-A8YN-01 5 177574596 177574596 G A RMND5B Missense_Mutation p.R308Q 0.23 deleterious(0) probably_damaging(0.941) TCGA-F2-A8YN-01 5 39331865 39331865 G C C9 Missense_Mutation p.F176L 0.06 deleterious(0.01) possibly_damaging(0.507) TCGA-F2-A8YN-01 6 109690132 109690132 C T CD164 Silent p.L172L 0.55 TCGA-F2-A8YN-01 6 136570277 136570277 T A MTFR2 5'UTR 0.03 TCGA-F2-A8YN-01 6 137815036 137815036 C T OLIG3 Missense_Mutation p.R91H 0.14 deleterious(0) possibly_damaging(0.873) TCGA-F2-A8YN-01 6 144507954 144507954 C T STX11 Missense_Mutation p.R64W 0.07 deleterious(0) probably_damaging(1) TCGA-F2-A8YN-01 6 147124079 147124079 G C ADGB Intron 0.30 TCGA-F2-A8YN-01 6 32017099 32017099 G A TNXB 5'Flank 0.03 TCGA-F2-A8YN-01 6 96651947 96651947 G A FUT9 Missense_Mutation p.D306N 0.36 deleterious(0.03) possibly_damaging(0.573) TCGA-F2-A8YN-01 7 120768504 120768504 C T CPED1 Silent p.F457F 0.26 TCGA-F2-A8YN-01 7 27203297 27203297 C G HOXA9 Missense_Mutation p.R248S 0.05 deleterious(0) probably_damaging(0.987) TCGA-F2-A8YN-01 7 45753642 45753642 G A ADCY1 3'UTR 0.33 TCGA-F2-A8YN-01 7 63709435 63709435 G A ZNF679 5'UTR 0.27 TCGA-F2-A8YN-01 7 72754662 72754662 G A FKBP6 Missense_Mutation p.R204Q 0.03 tolerated(0.18) benign(0.068) TCGA-F2-A8YN-01 8 20107135 20107135 G A LZTS1 3'UTR 0.35 TCGA-F2-A8YN-01 9 114904607 114904607 A G SUSD1 Silent p.H233H 0.27 TCGA-F2-A8YN-01 9 21974771 21974774 GCCG A CDKN2A In_Frame_Del p.T18_A19delinsI 0.38 TCGA-F2-A8YN-01 9 98244279 98244279 T C PTCH1 Missense_Mutation p.D233G 0.26 deleterious(0) probably_damaging(1) TCGA-F2-A8YN-01 X 114141599 114141599 T A HTR2C Missense_Mutation p.L333Q 0.35 tolerated(0.07) probably_damaging(0.917) TCGA-F2-A8YN-01 X 134947460 134947461 - A CT45A5 Frame_Shift_Ins p.E163* 0.47 TCGA-F2-A8YN-01 X 154001414 154001414 T A DKC1 Missense_Mutation p.L349I 0.06 tolerated(0.17) possibly_damaging(0.734) TCGA-FB-A4P5-01 11 49831678 49831678 G T RP11-707M1.1 RNA 0.04 TCGA-FB-A4P5-01 17 73748594 73748594 G A ITGB4 Missense_Mutation p.M1348I 0.03 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-FB-A4P5-01 17 75398245 75398245 C T SEPT9 Nonsense_Mutation p.Q61* 0.05 TCGA-FB-A4P5-01 17 9808122 9808122 C T RCVRN Missense_Mutation p.V126I 0.04 tolerated(0.23) benign(0.014) TCGA-FB-A4P5-01 18 61653557 61653557 C G SERPINB8 Intron 0.05 TCGA-FB-A4P5-01 19 52619638 52619638 T C ZNF616 Missense_Mutation p.Q260R 0.04 tolerated(0.79) benign(0.04) TCGA-FB-A4P5-01 19 9721440 9721440 G A ZNF561 Silent p.H299H 0.04 TCGA-FB-A4P5-01 2 99013339 99013339 G A CNGA3 Missense_Mutation p.R569H 0.04 deleterious(0) probably_damaging(0.988) TCGA-FB-A4P5-01 8 141461429 141461429 G A TRAPPC9 Missense_Mutation p.T113M 0.05 deleterious(0.01) probably_damaging(0.995) TCGA-FB-A4P5-01 X 131216469 131216469 G A FRMD7 Missense_Mutation p.A276V 0.03 deleterious(0) probably_damaging(0.998) TCGA-FB-A4P5-01 X 40573077 40573077 C T MED14 Missense_Mutation p.R202Q 0.03 deleterious(0) possibly_damaging(0.749) TCGA-FB-A4P6-01 8 68062082 68062082 T C CSPP1 Silent p.Y675Y 0.03 TCGA-FB-A545-01 10 55616938 55616938 G T PCDH15 Missense_Mutation p.T1268K 0.50 tolerated(0.36) possibly_damaging(0.625) TCGA-FB-A545-01 11 32955744 32955744 A G QSER1 Silent p.V851V 0.49 TCGA-FB-A545-01 11 35218359 35218359 T G CD44 Missense_Mutation p.F245C 0.27 deleterious(0.01) benign(0.221) TCGA-FB-A545-01 11 62303520 62303521 - C AHNAK Frame_Shift_Ins p.S18* 0.30 TCGA-FB-A545-01 12 130184677 130184677 C T TMEM132D Missense_Mutation p.V216M 0.42 tolerated(0.24) benign(0.01) TCGA-FB-A545-01 12 24048945 24048945 G A SOX5 Nonsense_Mutation p.R18* 0.46 TCGA-FB-A545-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.36 deleterious(0) possibly_damaging(0.479) TCGA-FB-A545-01 12 4920057 4920057 G A KCNA6 Missense_Mutation p.A284T 0.40 tolerated(0.07) possibly_damaging(0.503) TCGA-FB-A545-01 14 23776971 23776971 G A BCL2L2-PABPN1 Intron 0.30 TCGA-FB-A545-01 15 79090455 79090455 T C ADAMTS7 Missense_Mutation p.K153E 0.53 deleterious(0.01) possibly_damaging(0.595) TCGA-FB-A545-01 15 88483870 88483870 A G NTRK3 Missense_Mutation p.M567T 0.46 tolerated(0.16) benign(0.089) TCGA-FB-A545-01 16 1749047 1749047 G A HN1L 3'UTR 0.57 TCGA-FB-A545-01 16 28841310 28841310 C T ATXN2L Missense_Mutation p.T322I 0.37 deleterious(0.01) probably_damaging(0.981) TCGA-FB-A545-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.54 deleterious(0) probably_damaging(0.998) TCGA-FB-A545-01 17 76967565 76967565 G T LGALS3BP 3'UTR 0.40 TCGA-FB-A545-01 18 14542998 14542998 C T POTEC Missense_Mutation p.D50N 0.07 deleterious_low_confidence(0.03) possibly_damaging(0.555) TCGA-FB-A545-01 1 215960150 215960150 C T USH2A Missense_Mutation p.D3417N 0.22 benign(0.26) TCGA-FB-A545-01 1 217947827 217947827 G A SPATA17 Missense_Mutation p.R224H 0.42 tolerated(0.55) benign(0.006) TCGA-FB-A545-01 1 26872417 26872417 G A RPS6KA1 Missense_Mutation p.R9H 0.47 deleterious_low_confidence(0.01) benign(0.001) TCGA-FB-A545-01 1 32196436 32196436 C T BAI2 Missense_Mutation p.V1449M 0.19 tolerated(0.25) possibly_damaging(0.907) TCGA-FB-A545-01 1 60491098 60491098 C G C1orf87 Missense_Mutation p.D368H 0.32 deleterious(0) possibly_damaging(0.582) TCGA-FB-A545-01 1 86497562 86497562 C G COL24A1 Missense_Mutation p.R683T 0.41 tolerated(0.27) benign(0.132) TCGA-FB-A545-01 20 33874249 33874249 C T FAM83C 3'UTR 0.35 TCGA-FB-A545-01 20 42635419 42635419 G T TOX2 Missense_Mutation p.G133V 0.29 deleterious(0.02) possibly_damaging(0.612) TCGA-FB-A545-01 22 20760941 20760941 A G ZNF74 Missense_Mutation p.N540D 0.32 tolerated(0.11) probably_damaging(0.985) TCGA-FB-A545-01 22 38119251 38119251 G A TRIOBP Missense_Mutation p.G230R 0.30 deleterious_low_confidence(0) benign(0.001) TCGA-FB-A545-01 2 179655562 179655562 T C TTN Missense_Mutation p.E558G 0.38 TCGA-FB-A545-01 2 220414568 220414568 C T TMEM198 Missense_Mutation p.R359W 0.31 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-FB-A545-01 2 90044354 90044354 C A IGKV2D-24 Missense_Mutation p.A92E 0.31 deleterious(0) benign(0.064) TCGA-FB-A545-01 2 99226308 99226308 C T UNC50 Missense_Mutation p.A29V 0.33 tolerated(0.27) possibly_damaging(0.774) TCGA-FB-A545-01 3 129195581 129195581 C T IFT122 Missense_Mutation p.R413C 0.42 deleterious(0.04) benign(0.427) TCGA-FB-A545-01 3 18462359 18462359 T G SATB1 Missense_Mutation p.E34A 0.42 deleterious(0) probably_damaging(0.973) TCGA-FB-A545-01 3 38087134 38087134 T C DLEC1 Missense_Mutation p.M171T 0.43 tolerated(0.31) benign(0.002) TCGA-FB-A545-01 3 49723069 49723069 G A MST1 Silent p.D449D 0.39 TCGA-FB-A545-01 3 49936017 49936017 C T MST1R Missense_Mutation p.M551I 0.38 tolerated(0.5) benign(0.002) TCGA-FB-A545-01 4 42580334 42580334 G A ATP8A1 Silent p.I357I 0.40 TCGA-FB-A545-01 5 178139093 178139093 G A ZNF354A Missense_Mutation p.H596Y 0.54 deleterious(0.02) probably_damaging(0.999) TCGA-FB-A545-01 6 111880452 111880452 G C TRAF3IP2 3'UTR 0.53 TCGA-FB-A545-01 6 35705825 35705825 G A ARMC12 Missense_Mutation p.R89Q 0.42 tolerated(0.23) benign(0.078) TCGA-FB-A545-01 6 84649843 84649843 C T CYB5R4 Missense_Mutation p.L393F 0.54 deleterious(0) probably_damaging(0.974) TCGA-FB-A545-01 7 150217038 150217038 A G GIMAP7 5'UTR 0.18 TCGA-FB-A545-01 8 124664070 124664070 C T KLHL38 Missense_Mutation p.G366E 0.31 tolerated(0.08) benign(0.08) TCGA-FB-A545-01 9 110249719 110249720 - G KLF4 Frame_Shift_Ins p.L319Pfs*4 0.28 TCGA-FB-A545-01 9 21971063 21971068 GGTGCA - CDKN2A In_Frame_Del p.L97_H98del 0.50 TCGA-FB-A545-01 X 107925082 107925082 G T COL4A5 Missense_Mutation p.G1394C 0.39 probably_damaging(1) TCGA-FB-A545-01 X 36007687 36007687 A G CXorf22 3'UTR 0.50 TCGA-FB-A5VM-01 10 115594787 115594787 T C DCLRE1A 3'UTR 0.10 TCGA-FB-A5VM-01 10 76797813 76797813 G A DUPD1 Silent p.V148V 0.13 TCGA-FB-A5VM-01 11 107462660 107462660 G C AP000889.3 Missense_Mutation p.L59F 0.17 tolerated_low_confidence(0.1) probably_damaging(0.934) TCGA-FB-A5VM-01 11 18736985 18736985 C G IGSF22 Missense_Mutation p.V509L 0.13 deleterious(0.03) benign(0.071) TCGA-FB-A5VM-01 11 22281145 22281145 A G ANO5 Silent p.E496E 0.11 TCGA-FB-A5VM-01 11 33763529 33763529 T C FBXO3 Silent p.E447E 0.12 TCGA-FB-A5VM-01 11 33763531 33763531 C T FBXO3 Missense_Mutation p.E447K 0.12 tolerated_low_confidence(0.37) unknown(0) TCGA-FB-A5VM-01 11 59599213 59599213 G A GIF Missense_Mutation p.A377V 0.11 deleterious(0.02) benign(0.023) TCGA-FB-A5VM-01 12 25380275 25380275 T G KRAS Missense_Mutation p.Q61H 0.13 deleterious(0) benign(0.371) TCGA-FB-A5VM-01 14 105818795 105818797 CTC - PACS2 In_Frame_Del p.S97del 0.34 TCGA-FB-A5VM-01 15 90892199 90892199 G T GABARAPL3 Missense_Mutation p.F77L 0.07 deleterious(0.02) benign(0.21) TCGA-FB-A5VM-01 15 93595475 93595475 C T RGMA Silent p.P139P 0.13 TCGA-FB-A5VM-01 16 10626632 10626632 T C EMP2 3'UTR 0.11 TCGA-FB-A5VM-01 16 47683068 47683068 G A PHKB Missense_Mutation p.D584N 0.14 deleterious(0.02) probably_damaging(1) TCGA-FB-A5VM-01 16 67695975 67695975 C T PARD6A Nonsense_Mutation p.R156* 0.13 TCGA-FB-A5VM-01 17 43591874 43591874 G A LRRC37A4P RNA 0.22 TCGA-FB-A5VM-01 17 67183986 67183986 C A ABCA10 Silent p.V722V 0.14 TCGA-FB-A5VM-01 17 7579585 7579585 G - TP53 Frame_Shift_Del p.L35Cfs*9 0.23 TCGA-FB-A5VM-01 18 33289706 33289706 G A GALNT1 Missense_Mutation p.R551Q 0.16 tolerated(0.4) benign(0.02) TCGA-FB-A5VM-01 19 10071228 10071228 C T COL5A3 Silent p.R1699R 0.14 TCGA-FB-A5VM-01 19 42799006 42799006 A G CIC Missense_Mutation p.Y1497C 0.10 probably_damaging(0.984) TCGA-FB-A5VM-01 19 44280710 44280710 G C KCNN4 Missense_Mutation p.H80D 0.12 deleterious(0) probably_damaging(0.979) TCGA-FB-A5VM-01 19 57089013 57089014 - TAA ZNF470 In_Frame_Ins p.F406delinsLI 0.11 TCGA-FB-A5VM-01 19 58231717 58231717 A T ZNF671 3'UTR 0.13 TCGA-FB-A5VM-01 1 153723618 153723618 C T INTS3 Missense_Mutation p.T211M 0.08 deleterious(0) probably_damaging(0.999) TCGA-FB-A5VM-01 1 156038083 156038083 G A RAB25 Missense_Mutation p.A88T 0.16 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FB-A5VM-01 1 161953822 161953822 G A OLFML2B Silent p.I632I 0.16 TCGA-FB-A5VM-01 1 186916023 186916023 C A PLA2G4A Silent p.S398S 0.11 TCGA-FB-A5VM-01 1 245318761 245318761 C T KIF26B Missense_Mutation p.A12V 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.75) TCGA-FB-A5VM-01 1 34401481 34401481 C T CSMD2 Missense_Mutation p.G158S 0.11 deleterious(0) probably_damaging(0.982) TCGA-FB-A5VM-01 1 70641617 70641617 G C LRRC40 Missense_Mutation p.L285V 0.06 deleterious(0.04) probably_damaging(0.968) TCGA-FB-A5VM-01 1 71873147 71873147 C T NEGR1 Silent p.K349K 0.14 TCGA-FB-A5VM-01 20 55012332 55012332 G T CASS4 Missense_Mutation p.G50V 0.09 deleterious(0) probably_damaging(1) TCGA-FB-A5VM-01 20 56186849 56186849 T G ZBP1 Missense_Mutation p.N270H 0.13 deleterious(0) probably_damaging(0.995) TCGA-FB-A5VM-01 21 46229016 46229016 C T SUMO3 Silent p.Q56Q 0.12 TCGA-FB-A5VM-01 22 40662850 40662850 C T TNRC6B Silent p.P872P 0.16 TCGA-FB-A5VM-01 2 111556628 111556628 C T ACOXL Silent p.N166N 0.13 TCGA-FB-A5VM-01 2 135745297 135745297 T C MAP3K19 Missense_Mutation p.Q382R 0.14 tolerated(0.25) benign(0.02) TCGA-FB-A5VM-01 2 157435503 157435503 G T GPD2 Missense_Mutation p.D624Y 0.08 deleterious(0) possibly_damaging(0.738) TCGA-FB-A5VM-01 2 165953881 165953881 C A SCN3A Missense_Mutation p.D1374Y 0.13 deleterious(0.02) benign(0.16) TCGA-FB-A5VM-01 3 140401600 140401600 G A TRIM42 Missense_Mutation p.R213H 0.12 deleterious(0.01) benign(0.01) TCGA-FB-A5VM-01 3 172643179 172643179 T G SPATA16 Missense_Mutation p.K395N 0.11 deleterious(0.02) possibly_damaging(0.607) TCGA-FB-A5VM-01 3 98109887 98109887 A G OR5K3 Missense_Mutation p.I126M 0.22 deleterious(0) probably_damaging(1) TCGA-FB-A5VM-01 3 9956176 9956176 C T IL17RE Intron 0.26 TCGA-FB-A5VM-01 4 154542991 154542991 G T KIAA0922 Missense_Mutation p.Q1283H 0.12 tolerated(0.08) benign(0.047) TCGA-FB-A5VM-01 4 47163392 47163392 T C GABRB1 Missense_Mutation p.F123L 0.12 tolerated(0.24) probably_damaging(0.955) TCGA-FB-A5VM-01 4 5798842 5798842 G A EVC Silent p.T660T 0.14 TCGA-FB-A5VM-01 4 88732603 88732603 C T IBSP Silent p.S165S 0.14 TCGA-FB-A5VM-01 5 126793021 126793021 C A MEGF10 3'UTR 0.22 TCGA-FB-A5VM-01 5 136997650 136997650 A G KLHL3 Missense_Mutation p.M236T 0.18 deleterious(0) probably_damaging(0.925) TCGA-FB-A5VM-01 5 14610393 14610393 C T FAM105A Silent p.N347N 0.08 TCGA-FB-A5VM-01 5 5235183 5235183 A G ADAMTS16 Missense_Mutation p.N636S 0.09 deleterious(0.02) possibly_damaging(0.702) TCGA-FB-A5VM-01 6 12121002 12121002 T C HIVEP1 Missense_Mutation p.V325A 0.15 tolerated(0.09) benign(0.033) TCGA-FB-A5VM-01 6 121544428 121544428 G T TBC1D32 Missense_Mutation p.P812H 0.11 deleterious(0) probably_damaging(0.996) TCGA-FB-A5VM-01 6 26413540 26413540 G A BTN3A1 Missense_Mutation p.E388K 0.12 tolerated(0.22) benign(0.054) TCGA-FB-A5VM-01 6 33374225 33374225 T C KIFC1 Missense_Mutation p.S597P 0.12 deleterious(0.03) probably_damaging(0.997) TCGA-FB-A5VM-01 6 90422465 90422465 C T MDN1 Missense_Mutation p.R2420Q 0.12 benign(0.002) TCGA-FB-A5VM-01 7 100460407 100460407 G A SLC12A9 Missense_Mutation p.V606M 0.15 deleterious(0) possibly_damaging(0.594) TCGA-FB-A5VM-01 7 117432633 117432633 G A CTTNBP2 Missense_Mutation p.T206M 0.15 tolerated(0.16) benign(0.042) TCGA-FB-A5VM-01 7 36917614 36917614 C T ELMO1 Splice_Site p.X608_splice 0.11 TCGA-FB-A5VM-01 7 99521174 99521174 A T GJC3 Missense_Mutation p.D278E 0.12 deleterious_low_confidence(0) benign(0.417) TCGA-FB-A5VM-01 8 10470231 10470231 G A RP1L1 Silent p.T459T 0.14 TCGA-FB-A5VM-01 8 105026802 105026802 G A RIMS2 Missense_Mutation p.R1098Q 0.12 deleterious_low_confidence(0) possibly_damaging(0.8) TCGA-FB-A5VM-01 8 114449093 114449093 G A CSMD3 5'UTR 0.26 TCGA-FB-A5VM-01 8 133153411 133153411 C T KCNQ3 Missense_Mutation p.R477H 0.10 deleterious(0.01) probably_damaging(0.956) TCGA-FB-A5VM-01 8 142441234 142441234 G T PTP4A3 3'UTR 0.10 TCGA-FB-A5VM-01 8 146076505 146076505 G A COMMD5 Silent p.V73V 0.15 TCGA-FB-A5VM-01 9 82187661 82187661 T A TLE4 5'UTR 0.10 TCGA-FB-A5VM-01 X 152806983 152806983 G T ATP2B3 Silent p.S125S 0.30 TCGA-FB-A5VM-01 X 79932804 79932804 G A BRWD3 Silent p.I1571I 0.28 TCGA-FB-A78T-01 10 117061456 117061456 G C ATRNL1 Missense_Mutation p.M907I 0.26 tolerated(0.06) benign(0.438) TCGA-FB-A78T-01 10 17949700 17949700 G C MRC1L1 Missense_Mutation p.C1355S 0.04 probably_damaging(1) TCGA-FB-A78T-01 11 14536026 14536026 C T PSMA1 Missense_Mutation p.R95H 0.09 deleterious(0) benign(0.216) TCGA-FB-A78T-01 11 66043759 66043759 C G RAB1B 3'UTR 0.33 TCGA-FB-A78T-01 11 72406856 72406856 C G ARAP1 Silent p.V1109V 0.08 TCGA-FB-A78T-01 12 25398282 25398282 C A KRAS Missense_Mutation p.G13C 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-FB-A78T-01 12 25398283 25398283 A G KRAS Silent p.G12G 0.14 TCGA-FB-A78T-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.14 deleterious(0.02) possibly_damaging(0.773) TCGA-FB-A78T-01 12 57859598 57859598 C T GLI1 Missense_Mutation p.R218W 0.04 deleterious(0) probably_damaging(0.998) TCGA-FB-A78T-01 12 72955964 72955964 A C TRHDE Missense_Mutation p.K558T 0.06 tolerated(0.17) benign(0.237) TCGA-FB-A78T-01 13 28136823 28136823 C G LNX2 Missense_Mutation p.E317D 0.21 deleterious(0) probably_damaging(0.935) TCGA-FB-A78T-01 14 36783734 36783735 - T MBIP Frame_Shift_Ins p.I186Yfs*2 0.26 TCGA-FB-A78T-01 14 74358760 74358760 C A ZNF410 5'UTR 0.19 TCGA-FB-A78T-01 15 29397624 29397624 G T APBA2 Missense_Mutation p.A523S 0.34 deleterious(0.01) probably_damaging(0.973) TCGA-FB-A78T-01 15 75109005 75109005 C T LMAN1L Silent p.D157D 0.22 TCGA-FB-A78T-01 16 31500513 31500513 G C SLC5A2 Missense_Mutation p.G507R 0.29 tolerated(0.13) probably_damaging(1) TCGA-FB-A78T-01 16 50263245 50263245 G C PAPD5 3'UTR 0.04 TCGA-FB-A78T-01 16 72992317 72992317 G A ZFHX3 Silent p.G576G 0.26 TCGA-FB-A78T-01 17 2224891 2224891 G C SRR Missense_Mutation p.G192A 0.07 deleterious(0) probably_damaging(1) TCGA-FB-A78T-01 17 34136521 34136521 C T TAF15 5'UTR 0.27 TCGA-FB-A78T-01 17 42394958 42394958 C T RUNDC3A Intron 0.25 TCGA-FB-A78T-01 17 74136135 74136135 G A FOXJ1 Silent p.Y114Y 0.26 TCGA-FB-A78T-01 17 7577538 7577538 C A TP53 Missense_Mutation p.R248L 0.29 deleterious(0) probably_damaging(1) TCGA-FB-A78T-01 18 48604736 48604736 G T SMAD4 Nonsense_Mutation p.E520* 0.37 TCGA-FB-A78T-01 19 34832943 34832943 G T KIAA0355 Missense_Mutation p.A702S 0.20 tolerated_low_confidence(0.37) benign(0.013) TCGA-FB-A78T-01 19 37643141 37643141 C T ZNF585A Missense_Mutation p.E499K 0.22 deleterious(0.04) possibly_damaging(0.778) TCGA-FB-A78T-01 19 40520557 40520557 T C ZNF546 Silent p.H460H 0.28 TCGA-FB-A78T-01 19 4511842 4511842 G A PLIN4 Silent p.V696V 0.13 TCGA-FB-A78T-01 19 50963351 50963351 C T MYBPC2 Missense_Mutation p.A949V 0.14 tolerated(1) benign(0.376) TCGA-FB-A78T-01 19 52220299 52220299 G A HAS1 Nonsense_Mutation p.R284* 0.28 TCGA-FB-A78T-01 1 150528719 150528719 C T ADAMTSL4 Missense_Mutation p.R485C 0.21 deleterious(0) probably_damaging(0.967) TCGA-FB-A78T-01 1 207642232 207642232 T A CR2 Missense_Mutation p.F241Y 0.05 tolerated(0.1) benign(0.005) TCGA-FB-A78T-01 1 228480445 228480445 G A OBSCN Missense_Mutation p.V4038M 0.23 benign(0.021) TCGA-FB-A78T-01 1 38265867 38265867 C T MANEAL Missense_Mutation p.L456F 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-FB-A78T-01 1 9011554 9011554 G A CA6 Intron 0.17 TCGA-FB-A78T-01 20 33345146 33345146 G A NCOA6 Nonsense_Mutation p.Q469* 0.26 TCGA-FB-A78T-01 20 40980846 40980846 T C PTPRT Missense_Mutation p.N547S 0.26 tolerated(0.06) benign(0.056) TCGA-FB-A78T-01 20 42695426 42695426 A T TOX2 Silent p.P471P 0.04 TCGA-FB-A78T-01 2 113089550 113089550 G A ZC3H6 Missense_Mutation p.G1019R 0.21 tolerated(0.43) benign(0.032) TCGA-FB-A78T-01 2 17830679 17830679 C A VSNL1 Missense_Mutation p.F55L 0.13 tolerated(0.06) benign(0.033) TCGA-FB-A78T-01 2 97033078 97033078 G A NCAPH Silent p.L655L 0.05 TCGA-FB-A78T-01 2 98377121 98377121 G T TMEM131 Missense_Mutation p.N1681K 0.34 tolerated_low_confidence(0.44) benign(0.036) TCGA-FB-A78T-01 3 119132851 119132851 C T ARHGAP31 Missense_Mutation p.P692L 0.22 deleterious(0.04) benign(0.282) TCGA-FB-A78T-01 3 122274267 122274267 C A PARP9 Missense_Mutation p.A286S 0.24 deleterious(0.01) benign(0.094) TCGA-FB-A78T-01 3 140282022 140282022 G A CLSTN2 Missense_Mutation p.R820Q 0.25 tolerated(0.6) benign(0) TCGA-FB-A78T-01 3 183911015 183911015 A G ABCF3 Missense_Mutation p.M626V 0.26 tolerated(0.07) possibly_damaging(0.542) TCGA-FB-A78T-01 3 21706481 21706481 C T ZNF385D Missense_Mutation p.R21H 0.23 tolerated(0.1) benign(0.001) TCGA-FB-A78T-01 5 140229343 140229343 C A PCDHA9 Nonsense_Mutation p.Y421* 0.25 TCGA-FB-A78T-01 5 74886218 74886218 G C POLK Missense_Mutation p.E437Q 0.05 deleterious(0.04) possibly_damaging(0.471) TCGA-FB-A78T-01 6 29455344 29455344 G T MAS1L Silent p.I112I 0.25 TCGA-FB-A78T-01 7 106508903 106508903 C T PIK3CG Silent p.N299N 0.21 TCGA-FB-A78T-01 9 21971143 21971152 CAGTTGGGCT - CDKN2A Frame_Shift_Del p.E69Afs*74 0.44 TCGA-FB-A78T-01 9 5720313 5720313 A G KIAA1432 Missense_Mutation p.Q191R 0.25 deleterious(0.01) benign(0.213) TCGA-FB-A78T-01 9 90499515 90499517 TCC - SPATA31E1 In_Frame_Del p.L127del 0.32 TCGA-FB-A78T-01 X 123181288 123181288 A C STAG2 Missense_Mutation p.E251A 0.05 deleterious(0) probably_damaging(0.919) TCGA-FB-A78T-01 X 125685938 125685938 C T DCAF12L1 Silent p.A218A 0.27 TCGA-FB-A78T-01 X 130222630 130222630 C T ARHGAP36 Silent p.S505S 0.25 TCGA-FB-A78T-01 X 146318508 146318508 G A MIR508 RNA 0.35 TCGA-FB-A78T-01 X 26213152 26213152 G C MAGEB6 Missense_Mutation p.D397H 0.34 deleterious(0) probably_damaging(0.993) TCGA-FB-A78T-01 X 69672545 69672545 G T DLG3 Intron 0.09 TCGA-FB-A7DR-01 10 15183511 15183511 C T NMT2 Silent p.Q52Q 0.10 TCGA-FB-A7DR-01 10 27703290 27703290 G A PTCHD3 5'UTR 0.16 TCGA-FB-A7DR-01 10 28024186 28024186 G A MKX Missense_Mutation p.R156W 0.10 deleterious(0) probably_damaging(0.999) TCGA-FB-A7DR-01 10 63957932 63957932 G T RTKN2 Missense_Mutation p.T522K 0.10 tolerated(0.41) benign(0.003) TCGA-FB-A7DR-01 10 71903618 71903618 G A TYSND1 Missense_Mutation p.P426L 0.07 tolerated(1) benign(0.005) TCGA-FB-A7DR-01 11 22382454 22382454 C A SLC17A6 Nonsense_Mutation p.Y195* 0.09 TCGA-FB-A7DR-01 11 33731808 33731808 A C CD59 Missense_Mutation p.L84R 0.11 deleterious(0) probably_damaging(0.999) TCGA-FB-A7DR-01 11 46407277 46407277 C - CHRM4 Frame_Shift_Del p.P278Qfs*68 0.11 TCGA-FB-A7DR-01 11 64120286 64120286 C T CCDC88B Missense_Mutation p.R1143C 0.08 deleterious(0) probably_damaging(0.977) TCGA-FB-A7DR-01 11 66318750 66318750 G A ACTN3 3'UTR 0.12 TCGA-FB-A7DR-01 11 73022572 73022572 C T ARHGEF17 Silent p.P963P 0.10 TCGA-FB-A7DR-01 11 75508352 75508352 T G DGAT2 Missense_Mutation p.F262V 0.08 deleterious(0) probably_damaging(0.996) TCGA-FB-A7DR-01 11 93464174 93464174 A C KIAA1731 3'Flank 0.12 TCGA-FB-A7DR-01 12 16036495 16036495 C T STRAP Nonsense_Mutation p.Q45* 0.10 TCGA-FB-A7DR-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.10 deleterious(0) possibly_damaging(0.479) TCGA-FB-A7DR-01 12 53170672 53170672 C - KRT76 Frame_Shift_Del p.G135Vfs*24 0.20 TCGA-FB-A7DR-01 12 57485472 57485472 C T NAB2 Silent p.V216V 0.11 TCGA-FB-A7DR-01 12 57485473 57485473 C T NAB2 Missense_Mutation p.P217S 0.11 tolerated(0.42) benign(0) TCGA-FB-A7DR-01 12 57485474 57485474 C T NAB2 Missense_Mutation p.P217L 0.11 tolerated(0.05) benign(0.012) TCGA-FB-A7DR-01 14 106321805 106321805 C T IGHM Silent p.Q143Q 0.15 TCGA-FB-A7DR-01 14 106805378 106805378 G T IGHV4-31 Missense_Mutation p.P62Q 0.11 deleterious_low_confidence(0.04) probably_damaging(0.953) TCGA-FB-A7DR-01 14 73407031 73407031 G A DCAF4 Silent p.K99K 0.11 TCGA-FB-A7DR-01 15 102294661 102294661 G C DNM1P47 RNA 0.21 TCGA-FB-A7DR-01 15 74922153 74922153 C A CLK3 Missense_Mutation p.L616M 0.14 tolerated(0.11) possibly_damaging(0.908) TCGA-FB-A7DR-01 16 4391484 4391484 G T PAM16 Missense_Mutation p.A37D 0.07 deleterious(0.04) possibly_damaging(0.598) TCGA-FB-A7DR-01 17 61607501 61607501 C T KCNH6 Silent p.D119D 0.07 TCGA-FB-A7DR-01 17 80194631 80194631 C T SLC16A3 Missense_Mutation p.R84C 0.13 deleterious(0) probably_damaging(0.982) TCGA-FB-A7DR-01 19 10945733 10945733 G T TMED1 Silent p.I114I 0.10 TCGA-FB-A7DR-01 19 18779702 18779702 G A KLHL26 Missense_Mutation p.V499M 0.11 tolerated(0.09) probably_damaging(0.971) TCGA-FB-A7DR-01 19 49174003 49174003 G A NTN5 Missense_Mutation p.R81C 0.14 deleterious(0) possibly_damaging(0.863) TCGA-FB-A7DR-01 19 53889597 53889597 G T ZNF525 3'Flank 0.10 TCGA-FB-A7DR-01 1 120436490 120436491 - A ADAM30 3'UTR 0.13 TCGA-FB-A7DR-01 1 144859863 144859863 T G PDE4DIP Missense_Mutation p.Q2074P 0.05 deleterious(0.01) possibly_damaging(0.84) TCGA-FB-A7DR-01 1 156845430 156845430 C T NTRK1 Silent p.I491I 0.10 TCGA-FB-A7DR-01 1 158227626 158227626 G T CD1A 3'UTR 0.07 TCGA-FB-A7DR-01 1 186413293 186413293 G A PDC Missense_Mutation p.P187S 0.09 deleterious(0) probably_damaging(1) TCGA-FB-A7DR-01 1 247978219 247978219 A C OR14A16 Missense_Mutation p.I271M 0.13 tolerated(0.12) benign(0.088) TCGA-FB-A7DR-01 1 248636948 248636948 G A OR2T3 Silent p.P99P 0.12 TCGA-FB-A7DR-01 1 26520380 26520380 G A CATSPER4 Splice_Site p.X153_splice 0.10 TCGA-FB-A7DR-01 20 10273546 10273546 C T SNAP25 Intron 0.15 TCGA-FB-A7DR-01 20 32336800 32336800 C A ZNF341 Missense_Mutation p.S137R 0.10 deleterious(0) possibly_damaging(0.659) TCGA-FB-A7DR-01 21 46925285 46925285 C T COL18A1 Silent p.P1189P 0.07 TCGA-FB-A7DR-01 22 25150021 25150021 C - PIWIL3 Frame_Shift_Del p.E313Kfs*2 0.16 TCGA-FB-A7DR-01 22 30772763 30772763 G A CCDC157 3'UTR 0.15 TCGA-FB-A7DR-01 2 241465801 241465801 A G ANKMY1 Missense_Mutation p.F250L 0.10 deleterious(0) probably_damaging(0.997) TCGA-FB-A7DR-01 3 141162874 141162875 - A ZBTB38 Frame_Shift_Ins p.T551Nfs*9 0.12 TCGA-FB-A7DR-01 3 147128727 147128727 T G ZIC1 Missense_Mutation p.C276W 0.09 deleterious(0) benign(0.395) TCGA-FB-A7DR-01 3 186299863 186299863 G A DNAJB11 Missense_Mutation p.E227K 0.09 deleterious(0) probably_damaging(0.996) TCGA-FB-A7DR-01 4 6865606 6865606 G T KIAA0232 Missense_Mutation p.G1166V 0.12 deleterious(0) probably_damaging(1) TCGA-FB-A7DR-01 5 140593588 140593588 T A PCDHB13 5'UTR 0.13 TCGA-FB-A7DR-01 5 148748329 148748329 C T PCYOX1L 3'UTR 0.10 TCGA-FB-A7DR-01 5 153035414 153035414 C G GRIA1 Missense_Mutation p.H237Q 0.13 deleterious(0) probably_damaging(0.923) TCGA-FB-A7DR-01 6 157510773 157510773 C T ARID1B Intron 0.13 TCGA-FB-A7DR-01 7 21751430 21751430 C A DNAH11 Missense_Mutation p.S2319Y 0.13 probably_damaging(0.999) TCGA-FB-A7DR-01 7 44282246 44282246 G T CAMK2B Silent p.I203I 0.06 TCGA-FB-A7DR-01 8 143614731 143614731 C T BAI1 Silent p.T1158T 0.12 TCGA-FB-A7DR-01 8 37690642 37690642 C A GPR124 Missense_Mutation p.D404E 0.15 deleterious(0.02) possibly_damaging(0.816) TCGA-FB-A7DR-01 9 71155605 71155605 C T TMEM252 Silent p.A42A 0.12 TCGA-FB-AAPP-01 10 100152219 100152219 C T PYROXD2 Silent p.P344P 0.16 TCGA-FB-AAPP-01 10 124377583 124377583 C T DMBT1 Nonsense_Mutation p.R1519* 0.03 TCGA-FB-AAPP-01 10 134261371 134261371 C T C10orf91 Missense_Mutation p.R82C 0.05 tolerated_low_confidence(0.08) possibly_damaging(0.835) TCGA-FB-AAPP-01 10 30315575 30315575 G A KIAA1462 Missense_Mutation p.R1168W 0.08 tolerated(0.11) benign(0.38) TCGA-FB-AAPP-01 10 3178679 3178679 C T PFKP Missense_Mutation p.R755W 0.10 deleterious(0) probably_damaging(0.999) TCGA-FB-AAPP-01 11 101375374 101375374 C T TRPC6 Missense_Mutation p.G109D 0.54 deleterious(0) probably_damaging(1) TCGA-FB-AAPP-01 11 109294404 109294404 G A C11orf87 Silent p.P15P 0.27 TCGA-FB-AAPP-01 11 117335865 117335865 G A DSCAML1 Missense_Mutation p.R1080W 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-FB-AAPP-01 11 121033012 121033012 C T TECTA Silent p.A1735A 0.17 TCGA-FB-AAPP-01 11 124740169 124740169 G A ROBO3 Missense_Mutation p.R292H 0.26 deleterious(0.02) benign(0.091) TCGA-FB-AAPP-01 11 124793759 124793759 C A HEPACAM Missense_Mutation p.R192I 0.10 deleterious(0.01) probably_damaging(1) TCGA-FB-AAPP-01 11 128842373 128842373 T C ARHGAP32 Missense_Mutation p.N1329S 0.07 tolerated_low_confidence(1) benign(0.001) TCGA-FB-AAPP-01 11 134038048 134038048 C A NCAPD3 Missense_Mutation p.S1139I 0.06 deleterious(0) possibly_damaging(0.866) TCGA-FB-AAPP-01 11 33566734 33566734 G A KIAA1549L Silent p.T768T 0.59 TCGA-FB-AAPP-01 11 4142834 4142834 C T RRM1 Missense_Mutation p.R293C 0.08 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-FB-AAPP-01 12 100550723 100550723 G C AC010203.1 3'Flank 0.44 TCGA-FB-AAPP-01 12 121600237 121600237 C T P2RX7 Silent p.T149T 0.05 TCGA-FB-AAPP-01 12 125435335 125435335 C T DHX37 Missense_Mutation p.D962N 0.18 deleterious(0.03) possibly_damaging(0.819) TCGA-FB-AAPP-01 12 21531268 21531268 C G IAPP Missense_Mutation p.L60V 0.47 tolerated(0.18) benign(0.341) TCGA-FB-AAPP-01 12 49087818 49087818 G A CCNT1 Silent p.R393R 0.03 TCGA-FB-AAPP-01 12 57588845 57588845 G A LRP1 Missense_Mutation p.D2757N 0.03 probably_damaging(1) TCGA-FB-AAPP-01 12 95907493 95907493 G A METAP2 Missense_Mutation p.R417H 0.04 deleterious(0.01) probably_damaging(0.989) TCGA-FB-AAPP-01 13 25171679 25171679 T C RP11-556N21.1 RNA 0.51 TCGA-FB-AAPP-01 13 27333439 27333439 C T GPR12 Missense_Mutation p.V176I 0.38 tolerated(0.25) benign(0.008) TCGA-FB-AAPP-01 14 38724315 38724315 G A CLEC14A Missense_Mutation p.R305C 0.50 tolerated(0.14) benign(0.292) TCGA-FB-AAPP-01 15 25924815 25924815 C T ATP10A Silent p.P1391P 0.07 TCGA-FB-AAPP-01 15 42052633 42052633 G A MGA Missense_Mutation p.R2435Q 0.05 deleterious(0) probably_damaging(0.997) TCGA-FB-AAPP-01 15 42140039 42140039 G A PLA2G4B Missense_Mutation p.R1007Q 0.12 tolerated(0.31) unknown(0) TCGA-FB-AAPP-01 15 42172014 42172014 T C SPTBN5 Missense_Mutation p.S954G 0.19 benign(0.013) TCGA-FB-AAPP-01 15 43527833 43527833 C T TGM5 Silent p.P516P 0.18 TCGA-FB-AAPP-01 15 74622597 74622597 C A CCDC33 Missense_Mutation p.A453D 0.12 deleterious(0.01) probably_damaging(0.991) TCGA-FB-AAPP-01 15 75113416 75113416 G A LMAN1L Missense_Mutation p.G303E 0.50 tolerated(0.12) benign(0.263) TCGA-FB-AAPP-01 15 81172080 81172080 G A KIAA1199 Missense_Mutation p.D89N 0.22 tolerated(0.53) benign(0.009) TCGA-FB-AAPP-01 16 28914723 28914723 A C ATP2A1 Missense_Mutation p.D981A 0.45 deleterious(0) probably_damaging(1) TCGA-FB-AAPP-01 16 34739676 34739676 G T RP11-80F22.15 RNA 0.48 TCGA-FB-AAPP-01 16 51175457 51175457 C T SALL1 Missense_Mutation p.V226I 0.48 tolerated(1) benign(0.01) TCGA-FB-AAPP-01 16 85009895 85009895 C A ZDHHC7 3'UTR 0.70 TCGA-FB-AAPP-01 16 85952250 85952250 G A IRF8 Missense_Mutation p.G277R 0.08 deleterious(0) probably_damaging(1) TCGA-FB-AAPP-01 16 89579447 89579447 T C SPG7 Splice_Site p.X126_splice 0.91 TCGA-FB-AAPP-01 17 26685942 26685942 C T TMEM199 Missense_Mutation p.S72F 0.05 tolerated(0.23) benign(0.157) TCGA-FB-AAPP-01 17 45891044 45891044 G A OSBPL7 Missense_Mutation p.P503L 0.09 deleterious(0) probably_damaging(1) TCGA-FB-AAPP-01 17 56492756 56492757 CA - RNF43 Frame_Shift_Del p.L61Qfs*13 0.60 TCGA-FB-AAPP-01 18 76753947 76753947 G T SALL3 Silent p.L652L 0.11 TCGA-FB-AAPP-01 19 30099608 30099608 G A POP4 Missense_Mutation p.D18N 0.04 tolerated(0.33) benign(0.004) TCGA-FB-AAPP-01 19 31769889 31769889 G A TSHZ3 Silent p.D270D 0.04 TCGA-FB-AAPP-01 19 35557205 35557205 G A HPN 3'UTR 0.58 TCGA-FB-AAPP-01 19 43098947 43098947 G A CEACAM8 Missense_Mutation p.R12C 0.45 tolerated(0.25) benign(0.004) TCGA-FB-AAPP-01 19 47290737 47290737 G A SLC1A5 Silent p.I162I 0.24 TCGA-FB-AAPP-01 19 55045157 55045157 A G KIR3DX1 Missense_Mutation p.R93G 0.24 deleterious(0) benign(0.214) TCGA-FB-AAPP-01 19 55686641 55686641 G A SYT5 Missense_Mutation p.R203C 0.10 deleterious(0) probably_damaging(0.953) TCGA-FB-AAPP-01 19 6828153 6828153 C T VAV1 Nonsense_Mutation p.R332* 0.23 TCGA-FB-AAPP-01 1 100111819 100111819 T C PALMD 5'UTR 0.06 TCGA-FB-AAPP-01 1 101194865 101194865 C T VCAM1 Silent p.N377N 0.08 TCGA-FB-AAPP-01 1 11291104 11291104 C T MTOR Missense_Mutation p.R886H 0.28 deleterious(0) probably_damaging(0.999) TCGA-FB-AAPP-01 1 13910573 13910573 G T PDPN Silent p.S91S 0.05 TCGA-FB-AAPP-01 1 158687397 158687397 C T OR6K3 Missense_Mutation p.G170E 0.05 deleterious(0) possibly_damaging(0.884) TCGA-FB-AAPP-01 1 175293512 175293512 C T TNR Missense_Mutation p.G1313R 0.14 deleterious(0) probably_damaging(1) TCGA-FB-AAPP-01 1 184772798 184772798 C T FAM129A Missense_Mutation p.R492Q 0.09 deleterious(0) probably_damaging(0.968) TCGA-FB-AAPP-01 1 202842822 202842822 C A RP11-480I12.7 RNA 0.55 TCGA-FB-AAPP-01 1 231337128 231337128 G A TRIM67 Missense_Mutation p.V467I 0.53 deleterious(0.01) probably_damaging(0.972) TCGA-FB-AAPP-01 1 240371102 240371102 T C FMN2 Missense_Mutation p.I997T 0.24 unknown(0) TCGA-FB-AAPP-01 1 2528091 2528091 C T MMEL1 Missense_Mutation p.R437H 0.05 deleterious(0) probably_damaging(0.968) TCGA-FB-AAPP-01 1 82408791 82408791 G A LPHN2 Missense_Mutation p.R179H 0.24 deleterious(0) probably_damaging(0.993) TCGA-FB-AAPP-01 1 9803970 9803970 G A CLSTN1 Missense_Mutation p.P443L 0.21 deleterious(0.03) probably_damaging(1) TCGA-FB-AAPP-01 20 10629323 10629323 G A JAG1 Silent p.G481G 0.10 TCGA-FB-AAPP-01 20 126290 126290 C T DEFB126 Missense_Mutation p.S98L 0.05 tolerated(0.17) unknown(0) TCGA-FB-AAPP-01 20 1277814 1277814 C T SNPH Missense_Mutation p.R26W 0.15 deleterious(0) probably_damaging(0.992) TCGA-FB-AAPP-01 20 45920611 45920611 C T ZMYND8 Missense_Mutation p.V197I 0.04 tolerated(0.05) benign(0.274) TCGA-FB-AAPP-01 20 47879967 47879967 G A ZNFX1 Silent p.T735T 0.12 TCGA-FB-AAPP-01 20 57484420 57484420 C T GNAS Missense_Mutation p.R844C 0.96 deleterious(0.01) probably_damaging(1) TCGA-FB-AAPP-01 20 61162268 61162268 G A C20orf166 Silent p.V27V 0.13 TCGA-FB-AAPP-01 21 11047546 11047546 C A BAGE2 RNA 0.04 TCGA-FB-AAPP-01 21 39755757 39755757 G A ERG Silent p.N343N 0.57 TCGA-FB-AAPP-01 21 45855046 45855046 G A TRPM2 Missense_Mutation p.R1336H 0.25 deleterious(0) possibly_damaging(0.832) TCGA-FB-AAPP-01 21 47545713 47545713 G A COL6A2 Missense_Mutation p.V662M 0.35 deleterious(0) probably_damaging(1) TCGA-FB-AAPP-01 22 31884692 31884693 - TCTCCTA EIF4ENIF1 Nonsense_Mutation p.S5* 0.20 TCGA-FB-AAPP-01 22 37603719 37603719 C T SSTR3 Missense_Mutation p.V42I 0.08 tolerated(0.29) benign(0.005) TCGA-FB-AAPP-01 22 42605760 42605760 T C TCF20 Missense_Mutation p.E1851G 0.17 probably_damaging(0.999) TCGA-FB-AAPP-01 2 113888640 113888640 C T IL1RN Missense_Mutation p.P78L 0.17 tolerated(0.14) benign(0.104) TCGA-FB-AAPP-01 2 11758761 11758761 C T GREB1 Missense_Mutation p.R1254C 0.32 deleterious(0.01) possibly_damaging(0.821) TCGA-FB-AAPP-01 2 136605704 136605704 G A MCM6 Missense_Mutation p.R658C 0.51 deleterious(0) probably_damaging(0.995) TCGA-FB-AAPP-01 2 143986187 143986187 C T ARHGAP15 Nonsense_Mutation p.R112* 0.03 TCGA-FB-AAPP-01 2 160964285 160964285 C T ITGB6 Missense_Mutation p.V725I 0.07 tolerated(0.62) benign(0.007) TCGA-FB-AAPP-01 2 177036748 177036748 G A HOXD3 Missense_Mutation p.A349T 0.27 tolerated(0.28) possibly_damaging(0.821) TCGA-FB-AAPP-01 2 179413171 179413171 C T TTN Missense_Mutation p.R31061H 0.03 TCGA-FB-AAPP-01 2 186672819 186672819 G A FSIP2 Silent p.K6351K 0.42 TCGA-FB-AAPP-01 2 211168328 211168328 C T MYL1 Intron 0.21 TCGA-FB-AAPP-01 2 21250863 21250863 C T APOB Missense_Mutation p.R635Q 0.21 benign(0.195) TCGA-FB-AAPP-01 2 224463590 224463590 C A SCG2 Missense_Mutation p.L137F 0.39 tolerated(0.1) benign(0.133) TCGA-FB-AAPP-01 2 24299094 24299094 C T SF3B14 Silent p.A2A 0.34 TCGA-FB-AAPP-01 2 33952796 33952796 C T AC009499.1 Intron 0.39 TCGA-FB-AAPP-01 2 42531673 42531673 T A EML4 Missense_Mutation p.I650K 0.42 deleterious(0) possibly_damaging(0.756) TCGA-FB-AAPP-01 2 44502859 44502860 - C SLC3A1 Frame_Shift_Ins p.Q63Pfs*73 0.14 TCGA-FB-AAPP-01 2 54753681 54753681 G C SPTBN1 Silent p.R42R 0.20 TCGA-FB-AAPP-01 2 60983588 60983588 C T PAPOLG 5'UTR 0.08 TCGA-FB-AAPP-01 2 79348754 79348754 G A REG1A Missense_Mutation p.R44H 0.03 deleterious(0.03) benign(0.003) TCGA-FB-AAPP-01 3 100362231 100362231 C T GPR128 Missense_Mutation p.R274C 0.23 deleterious(0) possibly_damaging(0.8) TCGA-FB-AAPP-01 3 100455439 100455441 AGA - TFG In_Frame_Del p.E201del 0.17 TCGA-FB-AAPP-01 3 122002846 122002846 C T CASR Missense_Mutation p.P692L 0.25 tolerated(0.24) probably_damaging(0.986) TCGA-FB-AAPP-01 3 140689817 140689817 G A SLC25A36 Missense_Mutation p.R145Q 0.10 deleterious(0.01) possibly_damaging(0.563) TCGA-FB-AAPP-01 3 155301425 155301425 C T PLCH1 Missense_Mutation p.D191N 0.04 deleterious(0) probably_damaging(1) TCGA-FB-AAPP-01 3 167525063 167525063 G T SERPINI1 Missense_Mutation p.D305Y 0.05 deleterious(0) benign(0.272) TCGA-FB-AAPP-01 3 184298566 184298566 G A EPHB3 Missense_Mutation p.R813Q 0.51 deleterious(0.01) probably_damaging(1) TCGA-FB-AAPP-01 3 47618381 47618381 T A CSPG5 Missense_Mutation p.S379C 0.05 deleterious(0) probably_damaging(0.999) TCGA-FB-AAPP-01 3 9036163 9036163 G A SRGAP3 Missense_Mutation p.R758W 0.24 deleterious(0) probably_damaging(0.999) TCGA-FB-AAPP-01 4 110221776 110221776 G A COL25A1 Silent p.I110I 0.04 TCGA-FB-AAPP-01 4 175897739 175897739 A C ADAM29 Missense_Mutation p.I355L 0.21 tolerated(0.08) benign(0.252) TCGA-FB-AAPP-01 4 186336369 186336370 - T UFSP2 Frame_Shift_Ins p.N208Kfs*20 0.34 TCGA-FB-AAPP-01 4 187172778 187172778 C T KLKB1 Missense_Mutation p.L336F 0.10 tolerated(0.64) benign(0.072) TCGA-FB-AAPP-01 4 25366651 25366651 C A ZCCHC4 Silent p.I423I 0.04 TCGA-FB-AAPP-01 4 3769385 3769385 G A ADRA2C Missense_Mutation p.R351H 0.13 deleterious(0.03) benign(0.014) TCGA-FB-AAPP-01 4 47578836 47578836 C T ATP10D Missense_Mutation p.S1138L 0.32 deleterious(0) probably_damaging(0.999) TCGA-FB-AAPP-01 4 47578839 47578839 G T ATP10D Missense_Mutation p.G1139V 0.31 deleterious(0) probably_damaging(1) TCGA-FB-AAPP-01 5 140554443 140554443 C T PCDHB7 Missense_Mutation p.A676V 0.07 tolerated_low_confidence(0.87) benign(0.005) TCGA-FB-AAPP-01 5 140720485 140720485 C T PCDHGA2 Silent p.H649H 0.04 TCGA-FB-AAPP-01 5 149011717 149011717 G A ARHGEF37 Missense_Mutation p.R664Q 0.04 deleterious(0.03) benign(0.001) TCGA-FB-AAPP-01 5 161924 161924 G A PLEKHG4B Silent p.L482L 0.19 TCGA-FB-AAPP-01 5 178391963 178391963 C A ZNF454 Silent p.V186V 0.08 TCGA-FB-AAPP-01 5 179193309 179193309 C T MAML1 Missense_Mutation p.T433M 0.15 deleterious(0.02) benign(0.411) TCGA-FB-AAPP-01 5 26881445 26881445 C T CDH9 Missense_Mutation p.D724N 0.05 tolerated(0.12) probably_damaging(0.997) TCGA-FB-AAPP-01 5 33937967 33937967 C T RXFP3 Silent p.S374S 0.05 TCGA-FB-AAPP-01 5 476448 476448 C T SLC9A3 Missense_Mutation p.E646K 0.20 deleterious(0.01) benign(0.194) TCGA-FB-AAPP-01 5 71490089 71490089 C T MAP1B Nonsense_Mutation p.R303* 0.47 TCGA-FB-AAPP-01 6 12123822 12123822 G A HIVEP1 Missense_Mutation p.R1265H 0.46 deleterious(0) probably_damaging(0.999) TCGA-FB-AAPP-01 6 132022505 132022505 G A OR2A4 Silent p.L13L 0.05 TCGA-FB-AAPP-01 6 132891982 132891982 C T TAAR6 Silent p.D174D 0.59 TCGA-FB-AAPP-01 6 136888858 136888859 - CTCA MAP3K5 Frame_Shift_Ins p.T1225Efs*10 0.59 TCGA-FB-AAPP-01 6 152420041 152420041 G A ESR1 Silent p.S576S 0.16 TCGA-FB-AAPP-01 6 165715541 165715541 G A C6orf118 Silent p.R90R 0.60 TCGA-FB-AAPP-01 6 167796338 167796338 G A TCP10 Silent p.A8A 0.28 TCGA-FB-AAPP-01 6 24515421 24515421 A G ALDH5A1 Silent p.S264S 0.21 TCGA-FB-AAPP-01 6 28329181 28329181 C T ZKSCAN3 Silent p.S161S 0.33 TCGA-FB-AAPP-01 6 43018136 43018136 C T CUL7 Missense_Mutation p.V496I 0.46 deleterious(0.01) possibly_damaging(0.499) TCGA-FB-AAPP-01 6 55739269 55739269 G A BMP5 Missense_Mutation p.T132M 0.07 tolerated(0.25) benign(0.009) TCGA-FB-AAPP-01 7 119915439 119915439 G A KCND2 Silent p.A251A 0.49 TCGA-FB-AAPP-01 7 154876006 154876006 G A HTR5A Missense_Mutation p.V295M 0.04 deleterious(0.02) probably_damaging(0.967) TCGA-FB-AAPP-01 7 1607453 1607453 C T PSMG3 Missense_Mutation p.A84T 0.10 tolerated(1) benign(0.006) TCGA-FB-AAPP-01 7 1785967 1785967 G A ELFN1 Missense_Mutation p.E579K 0.44 deleterious(0.01) probably_damaging(0.922) TCGA-FB-AAPP-01 7 19184847 19184847 G A FERD3L Nonsense_Mutation p.R47* 0.03 TCGA-FB-AAPP-01 7 35144338 35144338 G A DPY19L2P1 RNA 0.45 TCGA-FB-AAPP-01 8 144889134 144889134 G A SCRIB Missense_Mutation p.A743V 0.38 probably_damaging(0.998) TCGA-FB-AAPP-01 8 3263663 3263663 A G CSMD1 Missense_Mutation p.S718P 0.42 probably_damaging(0.999) TCGA-FB-AAPP-01 8 59059480 59059480 G A FAM110B Missense_Mutation p.A231T 0.04 tolerated(0.43) benign(0.001) TCGA-FB-AAPP-01 8 87549866 87549866 C T CPNE3 Missense_Mutation p.R179W 0.04 deleterious(0) probably_damaging(0.952) TCGA-FB-AAPP-01 9 111617940 111617940 C T ACTL7B Missense_Mutation p.D91N 0.48 tolerated(0.5) probably_damaging(0.999) TCGA-FB-AAPP-01 9 111625720 111625720 G A ACTL7A Missense_Mutation p.R373H 0.43 deleterious(0.01) benign(0.235) TCGA-FB-AAPP-01 9 119976846 119976846 C T ASTN2 Missense_Mutation p.R269H 0.35 deleterious_low_confidence(0.02) unknown(0) TCGA-FB-AAPP-01 9 130269516 130269516 G A FAM129B Missense_Mutation p.R617W 0.05 deleterious(0.04) benign(0.046) TCGA-FB-AAPP-01 9 130507312 130507312 C T SH2D3C Missense_Mutation p.R444H 0.43 deleterious(0) probably_damaging(0.999) TCGA-FB-AAPP-01 9 137622301 137622301 G A COL5A1 Missense_Mutation p.D382N 0.05 benign(0.33) TCGA-FB-AAPP-01 9 137721880 137721880 G A COL5A1 Missense_Mutation p.R1709H 0.05 unknown(0) TCGA-FB-AAPP-01 9 2644767 2644767 G A VLDLR Missense_Mutation p.C367Y 0.19 deleterious(0.01) probably_damaging(0.981) TCGA-FB-AAPP-01 9 6980958 6980958 A G KDM4C Missense_Mutation p.M319V 0.48 deleterious(0) possibly_damaging(0.475) TCGA-FB-AAPP-01 X 107869450 107869450 T C COL4A5 Silent p.G1039G 0.04 TCGA-FB-AAPP-01 X 49598495 49598495 A G PAGE4 3'UTR 0.96 TCGA-FB-AAPP-01 X 65824331 65824331 C T EDA2R Missense_Mutation p.R95H 0.91 deleterious(0.02) possibly_damaging(0.901) TCGA-FB-AAPP-01 X 83128600 83128600 G T CYLC1 Missense_Mutation p.S295I 0.71 tolerated(0.13) unknown(0) TCGA-FB-AAPP-01 X 90691366 90691366 A T PABPC5 Missense_Mutation p.I264F 0.31 tolerated(0.56) benign(0.011) TCGA-FB-AAPQ-01 10 129877829 129877829 G T PTPRE Missense_Mutation p.G633V 0.26 deleterious(0) probably_damaging(0.995) TCGA-FB-AAPQ-01 10 132891371 132891371 C T TCERG1L 3'UTR 0.04 TCGA-FB-AAPQ-01 10 63170325 63170325 A C TMEM26 Missense_Mutation p.F288V 0.22 deleterious(0) probably_damaging(1) TCGA-FB-AAPQ-01 11 103006455 103006455 A G DYNC2H1 Silent p.G784G 0.19 TCGA-FB-AAPQ-01 11 113270540 113270540 G A ANKK1 Missense_Mutation p.A617T 0.21 deleterious(0.02) benign(0.049) TCGA-FB-AAPQ-01 11 134031774 134031774 T C NCAPD3 Missense_Mutation p.N1196D 0.22 deleterious(0.01) possibly_damaging(0.76) TCGA-FB-AAPQ-01 11 14901766 14901766 C A CYP2R1 Nonsense_Mutation p.E306* 0.05 TCGA-FB-AAPQ-01 11 319946 319946 G T IFITM3 Silent p.A98A 0.20 TCGA-FB-AAPQ-01 11 45947827 45947827 T C GYLTL1B Missense_Mutation p.C313R 0.16 deleterious(0) probably_damaging(1) TCGA-FB-AAPQ-01 11 64419602 64419602 G A NRXN2 Missense_Mutation p.A814V 0.23 tolerated(0.11) benign(0.071) TCGA-FB-AAPQ-01 11 77919947 77919947 G A USP35 Silent p.T510T 0.24 TCGA-FB-AAPQ-01 12 104326605 104326605 T - HSP90B1 Frame_Shift_Del p.F100Sfs*2 0.25 TCGA-FB-AAPQ-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.23 deleterious(0) benign(0.361) TCGA-FB-AAPQ-01 12 45568140 45568140 T C PLEKHA8P1 RNA 0.14 TCGA-FB-AAPQ-01 12 62860841 62860841 C G MON2 5'UTR 0.19 TCGA-FB-AAPQ-01 14 107078487 107078487 G A IGHV1-58 Silent p.Y79Y 0.24 TCGA-FB-AAPQ-01 16 50745137 50745137 C T NOD2 Missense_Mutation p.R439C 0.24 tolerated(0.08) benign(0.036) TCGA-FB-AAPQ-01 16 77317858 77317858 T C ADAMTS18 Missense_Mutation p.I1221V 0.05 deleterious_low_confidence(0) benign(0.031) TCGA-FB-AAPQ-01 17 34236101 34236101 C T AC015849.16 RNA 0.19 TCGA-FB-AAPQ-01 17 36709027 36709027 C T SRCIN1 Missense_Mutation p.G756S 0.24 deleterious(0.04) benign(0.172) TCGA-FB-AAPQ-01 17 7577131 7577132 GC - TP53 Frame_Shift_Del p.S269Ifs*2 0.23 TCGA-FB-AAPQ-01 18 48591919 48591919 G A SMAD4 Missense_Mutation p.R361H 0.30 deleterious(0.03) probably_damaging(1) TCGA-FB-AAPQ-01 19 17173553 17173553 T A HAUS8 Missense_Mutation p.M62L 0.05 tolerated(0.47) benign(0.001) TCGA-FB-AAPQ-01 19 55086476 55086476 G T LILRA2 Missense_Mutation p.D211Y 0.32 deleterious(0.01) probably_damaging(0.979) TCGA-FB-AAPQ-01 19 55239346 55239346 C A KIR3DL3 Missense_Mutation p.P209T 0.34 deleterious(0) probably_damaging(0.996) TCGA-FB-AAPQ-01 1 161092295 161092295 C T DEDD Missense_Mutation p.R200Q 0.10 deleterious(0) possibly_damaging(0.636) TCGA-FB-AAPQ-01 1 161187859 161187859 C T FCER1G Nonsense_Mutation p.R45* 0.13 TCGA-FB-AAPQ-01 1 167064080 167064088 GGTTGTCAT - DUSP27 Missense_Mutation 0.29 TCGA-FB-AAPQ-01 1 233497954 233497954 G T MLK4 Missense_Mutation p.E489D 0.03 tolerated(0.18) benign(0.063) TCGA-FB-AAPQ-01 1 236849894 236849894 G A ACTN2 5'UTR 0.27 TCGA-FB-AAPQ-01 1 241798099 241798099 C T CHML Missense_Mutation p.E324K 0.04 deleterious(0.03) benign(0.276) TCGA-FB-AAPQ-01 20 37353589 37353589 C T SLC32A1 Silent p.G74G 0.18 TCGA-FB-AAPQ-01 20 55758862 55758862 G A BMP7 Missense_Mutation p.R292W 0.27 deleterious(0) probably_damaging(0.996) TCGA-FB-AAPQ-01 21 33975451 33975451 T A C21orf59 Intron 0.19 TCGA-FB-AAPQ-01 22 31523352 31523352 G A INPP5J Missense_Mutation p.G173S 0.19 deleterious(0) probably_damaging(1) TCGA-FB-AAPQ-01 22 42970161 42970161 C A SERHL2 3'UTR 0.20 TCGA-FB-AAPQ-01 2 100027216 100027216 A C REV1 Silent p.P762P 0.20 TCGA-FB-AAPQ-01 2 101893632 101893633 - A RNF149 3'UTR 0.21 TCGA-FB-AAPQ-01 2 103068312 103068312 A G IL18RAP Missense_Mutation p.I491V 0.04 tolerated(1) benign(0.014) TCGA-FB-AAPQ-01 2 1243542 1243542 C T SNTG2 Silent p.S294S 0.38 TCGA-FB-AAPQ-01 2 185802417 185802417 C T ZNF804A Missense_Mutation p.S765L 0.20 deleterious(0) probably_damaging(0.95) TCGA-FB-AAPQ-01 2 220494825 220494825 A G SLC4A3 Missense_Mutation p.T215A 0.11 tolerated_low_confidence(0.78) benign(0) TCGA-FB-AAPQ-01 2 222301271 222301271 A G EPHA4 Missense_Mutation p.S732P 0.15 deleterious(0) probably_damaging(0.979) TCGA-FB-AAPQ-01 2 242757458 242757458 G A NEU4 Missense_Mutation p.R193H 0.20 tolerated(1) benign(0.006) TCGA-FB-AAPQ-01 2 68882679 68882679 G A PROKR1 Missense_Mutation p.E385K 0.30 deleterious_low_confidence(0) possibly_damaging(0.797) TCGA-FB-AAPQ-01 3 148563359 148563359 G A CPB1 Missense_Mutation p.M309I 0.18 deleterious(0.01) benign(0.352) TCGA-FB-AAPQ-01 3 51418535 51418535 G A DOCK3 Missense_Mutation p.G1880S 0.29 tolerated_low_confidence(0.17) probably_damaging(0.999) TCGA-FB-AAPQ-01 3 99879303 99879303 G A CMSS1 Silent p.K61K 0.16 TCGA-FB-AAPQ-01 4 154557660 154557660 A C KIAA0922 Missense_Mutation p.T1589P 0.05 deleterious(0) probably_damaging(1) TCGA-FB-AAPQ-01 4 167675595 167675595 A - SPOCK3 Intron 0.25 TCGA-FB-AAPQ-01 5 150584969 150584969 C G CCDC69 Missense_Mutation p.G39A 0.23 tolerated(0.4) benign(0.005) TCGA-FB-AAPQ-01 6 32046935 32046935 C T RNA5SP206 5'Flank 0.21 TCGA-FB-AAPQ-01 7 105204334 105204334 G A RINT1 Missense_Mutation p.R609H 0.26 deleterious(0.02) probably_damaging(0.985) TCGA-FB-AAPQ-01 8 110588134 110588134 C T SYBU Silent p.R331R 0.04 TCGA-FB-AAPQ-01 8 41563703 41563703 A G ANK1 Silent p.D718D 0.25 TCGA-FB-AAPQ-01 9 104357220 104357220 C T PPP3R2 5'UTR 0.04 TCGA-FB-AAPQ-01 9 130272530 130272530 G C FAM129B Silent p.V352V 0.19 TCGA-FB-AAPQ-01 X 47500789 47500789 G A ELK1 Nonsense_Mutation p.Q18* 0.57 TCGA-FB-AAPS-01 10 17145151 17145151 G A CUBN Silent p.F501F 0.04 TCGA-FB-AAPS-01 10 50256523 50256523 C T VSTM4 Missense_Mutation p.A259T 0.05 deleterious(0.01) possibly_damaging(0.543) TCGA-FB-AAPS-01 10 73485201 73485201 G A CDH23 Missense_Mutation p.R1173Q 0.10 deleterious(0.01) probably_damaging(0.963) TCGA-FB-AAPS-01 11 27390249 27390249 G A LGR4 Missense_Mutation p.T674I 0.05 tolerated(0.58) benign(0.007) TCGA-FB-AAPS-01 12 100466468 100466468 C T UHRF1BP1L Missense_Mutation p.D511N 0.04 deleterious(0) probably_damaging(0.996) TCGA-FB-AAPS-01 13 109859074 109859074 G A MYO16 Missense_Mutation p.E1823K 0.10 deleterious_low_confidence(0) benign(0.322) TCGA-FB-AAPS-01 13 28979946 28979946 G A FLT1 Missense_Mutation p.R508C 0.05 deleterious(0.02) probably_damaging(0.988) TCGA-FB-AAPS-01 13 29599068 29599068 T A MTUS2 Missense_Mutation p.F88Y 0.06 tolerated(1) benign(0.244) TCGA-FB-AAPS-01 14 52781689 52781689 C T PTGER2 Silent p.P141P 0.05 TCGA-FB-AAPS-01 14 96779761 96779761 G T ATG2B Missense_Mutation p.F1218L 0.05 deleterious(0) benign(0.111) TCGA-FB-AAPS-01 15 69696202 69696202 C A PAQR5 3'UTR 0.07 TCGA-FB-AAPS-01 15 83438550 83438550 T C FSD2 Missense_Mutation p.N452D 0.09 deleterious(0) probably_damaging(1) TCGA-FB-AAPS-01 16 84476138 84476138 C T ATP2C2 Missense_Mutation p.A445V 0.07 deleterious(0) probably_damaging(1) TCGA-FB-AAPS-01 17 41006599 41006599 G A AOC3 Missense_Mutation p.V579M 0.05 deleterious(0.03) benign(0.002) TCGA-FB-AAPS-01 17 7578395 7578395 G A TP53 Missense_Mutation p.H179Y 0.07 deleterious(0) probably_damaging(1) TCGA-FB-AAPS-01 18 10530778 10530778 G T NAPG Missense_Mutation p.G23V 0.09 deleterious(0.05) benign(0.372) TCGA-FB-AAPS-01 19 17571500 17571500 C T NXNL1 Missense_Mutation p.R60Q 0.06 tolerated(0.21) benign(0.036) TCGA-FB-AAPS-01 19 36572414 36572414 G T WDR62 Missense_Mutation p.R438L 0.05 deleterious(0) probably_damaging(1) TCGA-FB-AAPS-01 19 38858385 38858385 G A CATSPERG Missense_Mutation p.E967K 0.06 tolerated(0.05) possibly_damaging(0.502) TCGA-FB-AAPS-01 1 158592846 158592846 C T SPTA1 Missense_Mutation p.R2016H 0.05 tolerated(0.05) benign(0.069) TCGA-FB-AAPS-01 1 32196581 32196581 G A BAI2 Silent p.S1400S 0.05 TCGA-FB-AAPS-01 1 38079563 38079563 C T RSPO1 Silent p.A146A 0.11 TCGA-FB-AAPS-01 1 44878230 44878230 G A RNF220 Missense_Mutation p.R154H 0.04 deleterious(0.03) probably_damaging(0.987) TCGA-FB-AAPS-01 22 19050735 19050735 C A DGCR2 Missense_Mutation p.R202L 0.05 deleterious_low_confidence(0.03) benign(0.262) TCGA-FB-AAPS-01 2 179444687 179444687 G A TTN Missense_Mutation p.R22443C 0.07 TCGA-FB-AAPS-01 2 21234547 21234547 G T APOB Silent p.V1731V 0.05 TCGA-FB-AAPS-01 2 48915275 48915275 C T LHCGR Missense_Mutation p.R554Q 0.05 tolerated(0.37) benign(0.023) TCGA-FB-AAPS-01 4 119978661 119978661 G A SYNPO2 Missense_Mutation p.D1120N 0.05 tolerated(0.42) benign(0.018) TCGA-FB-AAPS-01 5 121187809 121187809 G A FTMT Missense_Mutation p.A51T 0.16 tolerated(0.39) benign(0.004) TCGA-FB-AAPS-01 6 132909791 132909791 G A TAAR5 3'UTR 0.05 TCGA-FB-AAPS-01 6 7229268 7229268 G T RREB1 Missense_Mutation p.E312D 0.05 tolerated(0.19) benign(0.073) TCGA-FB-AAPS-01 6 7229269 7229269 C T RREB1 Nonsense_Mutation p.Q313* 0.05 TCGA-FB-AAPS-01 8 4494899 4494899 G A CSMD1 Silent p.Y89Y 0.05 TCGA-FB-AAPS-01 8 8176529 8176529 C T SGK223 Missense_Mutation p.R1119H 0.05 probably_damaging(0.998) TCGA-FB-AAPS-01 9 131186737 131186737 C T CERCAM Missense_Mutation p.R204C 0.04 deleterious(0) probably_damaging(0.957) TCGA-FB-AAPS-01 9 32784266 32784266 G A TMEM215 Missense_Mutation p.V29I 0.05 deleterious(0) probably_damaging(0.987) TCGA-FB-AAPS-01 X 108924283 108924283 C T ACSL4 Missense_Mutation p.G241E 0.10 deleterious(0.02) benign(0.171) TCGA-FB-AAPS-01 X 135957079 135957080 - A RBMX Intron 0.08 TCGA-FB-AAPS-01 X 30577641 30577641 A T CXorf21 Missense_Mutation p.L278M 0.04 deleterious(0.02) possibly_damaging(0.857) TCGA-FB-AAPU-01 11 10500085 10500085 C G AMPD3 Missense_Mutation p.F87L 0.03 tolerated(0.29) benign(0.004) TCGA-FB-AAPU-01 11 17794037 17794037 C A KCNC1 Missense_Mutation p.L466M 0.33 tolerated(0.24) probably_damaging(0.926) TCGA-FB-AAPU-01 11 47399917 47399917 C T SPI1 5'UTR 0.24 TCGA-FB-AAPU-01 11 5969013 5969013 T A OR56A3 Missense_Mutation p.V146D 0.32 deleterious(0.02) benign(0.278) TCGA-FB-AAPU-01 11 6503419 6503419 G A TIMM10B Missense_Mutation p.E94K 0.22 tolerated(0.33) benign(0.006) TCGA-FB-AAPU-01 11 73718034 73718034 C T UCP3 Silent p.L18L 0.32 TCGA-FB-AAPU-01 11 8122047 8122047 C T TUB Intron 0.34 TCGA-FB-AAPU-01 12 121098645 121098645 T C CABP1 Splice_Site p.X313_splice 0.07 TCGA-FB-AAPU-01 12 22637787 22637787 C A C2CD5 Missense_Mutation p.C465F 0.09 deleterious(0.01) benign(0.007) TCGA-FB-AAPU-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.34 deleterious(0.03) benign(0.376) TCGA-FB-AAPU-01 12 3042674 3042674 G A TULP3 Missense_Mutation p.E263K 0.31 deleterious(0.03) possibly_damaging(0.669) TCGA-FB-AAPU-01 12 71029558 71029558 C T PTPRB Missense_Mutation p.G115D 0.32 deleterious_low_confidence(0.02) possibly_damaging(0.818) TCGA-FB-AAPU-01 13 32937480 32937480 A - BRCA2 Frame_Shift_Del p.V2716Wfs*17 0.35 TCGA-FB-AAPU-01 14 50911762 50911762 T C MAP4K5 Missense_Mutation p.I446V 0.08 tolerated(0.59) benign(0.001) TCGA-FB-AAPU-01 15 40682085 40682085 C T KNSTRN Missense_Mutation p.R214W 0.33 deleterious(0) possibly_damaging(0.799) TCGA-FB-AAPU-01 15 83215935 83215935 G T CPEB1 Missense_Mutation p.S484R 0.55 deleterious(0.04) benign(0.046) TCGA-FB-AAPU-01 16 62055298 62055298 G A CDH8 Missense_Mutation p.R4W 0.11 tolerated_low_confidence(0.09) probably_damaging(0.973) TCGA-FB-AAPU-01 16 67221162 67221162 C T EXOC3L1 Missense_Mutation p.A336T 0.34 tolerated(0.67) benign(0.021) TCGA-FB-AAPU-01 17 41738449 41738449 T C MEOX1 Missense_Mutation p.R152G 0.02 deleterious(0.04) benign(0.034) TCGA-FB-AAPU-01 17 47230177 47230177 C T B4GALNT2 Silent p.R183R 0.33 TCGA-FB-AAPU-01 17 66430712 66430712 C A WIPI1 Missense_Mutation p.R226L 0.23 deleterious(0) possibly_damaging(0.547) TCGA-FB-AAPU-01 17 66430734 66430734 C A WIPI1 Missense_Mutation p.G219W 0.22 deleterious(0) probably_damaging(0.996) TCGA-FB-AAPU-01 17 76047129 76047153 CCCCCAACAGAACTGGGCTAGCAAA - TNRC6C Frame_Shift_Del p.Q664Kfs*5 0.09 TCGA-FB-AAPU-01 19 11022882 11022882 G A CARM1 Missense_Mutation p.G194D 0.02 deleterious(0) probably_damaging(1) TCGA-FB-AAPU-01 19 15483674 15483674 C T AKAP8 Silent p.R283R 0.22 TCGA-FB-AAPU-01 19 38590667 38590667 G T SIPA1L3 Silent p.G577G 0.32 TCGA-FB-AAPU-01 19 4501203 4501203 A G HDGFRP2 Missense_Mutation p.D602G 0.30 tolerated(0.06) possibly_damaging(0.728) TCGA-FB-AAPU-01 19 50753776 50753777 - C MYH14 Frame_Shift_Ins p.G557Wfs*8 0.31 TCGA-FB-AAPU-01 19 53270312 53270312 G T ZNF600 Missense_Mutation p.L233I 0.06 deleterious(0.01) possibly_damaging(0.836) TCGA-FB-AAPU-01 19 757669 757669 C T MISP Silent p.N241N 0.24 TCGA-FB-AAPU-01 1 154998864 154998864 G T DCST2 Missense_Mutation p.L509I 0.21 tolerated(0.28) possibly_damaging(0.566) TCGA-FB-AAPU-01 1 172571287 172571297 AAATACTTCTC - SUCO Frame_Shift_Del p.N1035Ifs*2 0.24 TCGA-FB-AAPU-01 1 176564265 176564265 T C PAPPA2 Silent p.L509L 0.22 TCGA-FB-AAPU-01 1 176659486 176659486 G A PAPPA2 Missense_Mutation p.R784Q 0.39 tolerated(0.82) benign(0.013) TCGA-FB-AAPU-01 1 1849760 1849760 G A TMEM52 Missense_Mutation p.A94V 0.55 tolerated(0.12) benign(0.297) TCGA-FB-AAPU-01 1 228602776 228602776 C A TRIM17 5'UTR 0.20 TCGA-FB-AAPU-01 1 22986137 22986137 G A C1QB Splice_Site p.X63_splice 0.54 TCGA-FB-AAPU-01 1 241671912 241671912 A G FH Silent p.T243T 0.50 TCGA-FB-AAPU-01 1 50884890 50884890 G A DMRTA2 Missense_Mutation p.A359V 0.64 tolerated_low_confidence(0.33) possibly_damaging(0.499) TCGA-FB-AAPU-01 1 78031331 78031331 G C ZZZ3 Missense_Mutation p.N902K 0.30 deleterious(0) probably_damaging(0.998) TCGA-FB-AAPU-01 1 85417986 85417986 G A MCOLN2 Silent p.G229G 0.07 TCGA-FB-AAPU-01 1 94578575 94578575 G C ABCA4 Silent p.V38V 0.17 TCGA-FB-AAPU-01 20 55033569 55033569 C T CASS4 Silent p.V709V 0.34 TCGA-FB-AAPU-01 20 60511862 60511862 A G CDH4 Missense_Mutation p.E871G 0.13 deleterious(0) probably_damaging(1) TCGA-FB-AAPU-01 20 60701454 60701454 G A LSM14B Missense_Mutation p.S129N 0.36 tolerated(0.11) benign(0.014) TCGA-FB-AAPU-01 21 43815480 43815480 C T TMPRSS3 Missense_Mutation p.R16Q 0.34 tolerated_low_confidence(0.17) possibly_damaging(0.573) TCGA-FB-AAPU-01 22 20103778 20103778 C T TRMT2A Missense_Mutation p.V128I 0.28 tolerated(0.12) benign(0.008) TCGA-FB-AAPU-01 22 22316871 22316871 C T TOP3B Silent p.E485E 0.06 TCGA-FB-AAPU-01 22 24579030 24579030 C G SUSD2 Missense_Mutation p.Q28E 0.05 tolerated(0.15) benign(0.11) TCGA-FB-AAPU-01 22 24579094 24579094 C G SUSD2 Missense_Mutation p.S49C 0.10 tolerated(0.09) possibly_damaging(0.886) TCGA-FB-AAPU-01 22 29915009 29915009 T C THOC5 Missense_Mutation p.Q492R 0.09 deleterious(0) benign(0.403) TCGA-FB-AAPU-01 22 37466587 37466587 C A TMPRSS6 Missense_Mutation p.C602F 0.04 deleterious(0) probably_damaging(1) TCGA-FB-AAPU-01 22 39084975 39084975 C A JOSD1 Missense_Mutation p.K158N 0.04 tolerated(0.09) benign(0.146) TCGA-FB-AAPU-01 22 41620150 41620150 T A L3MBTL2 Missense_Mutation p.Y357N 0.42 deleterious(0) probably_damaging(0.998) TCGA-FB-AAPU-01 22 43524566 43524566 G C BIK Missense_Mutation p.D109H 0.51 tolerated(0.17) possibly_damaging(0.835) TCGA-FB-AAPU-01 2 120005698 120005698 C T STEAP3 Silent p.C322C 0.55 TCGA-FB-AAPU-01 2 151326505 151326505 A G RND3 Missense_Mutation p.M244T 0.52 deleterious(0) possibly_damaging(0.775) TCGA-FB-AAPU-01 2 1653014 1653014 G A PXDN Silent p.H846H 0.36 TCGA-FB-AAPU-01 2 234959698 234959698 A T SPP2 Missense_Mutation p.S57C 0.42 deleterious(0.01) probably_damaging(0.99) TCGA-FB-AAPU-01 2 24521586 24521586 A G ITSN2 Missense_Mutation p.I481T 0.31 deleterious(0.01) unknown(0) TCGA-FB-AAPU-01 2 27322158 27322158 C G KHK Intron 0.31 TCGA-FB-AAPU-01 2 42719978 42719978 C G KCNG3 Missense_Mutation p.G222R 0.34 tolerated(0.53) benign(0.001) TCGA-FB-AAPU-01 3 122081856 122081856 C T CCDC58 Missense_Mutation p.E115K 0.30 deleterious(0) probably_damaging(0.942) TCGA-FB-AAPU-01 3 123418920 123418920 G A MYLK Missense_Mutation p.T1132M 0.33 tolerated(0.06) benign(0.425) TCGA-FB-AAPU-01 3 142094760 142094760 A C XRN1 Missense_Mutation p.V953G 0.27 deleterious(0) possibly_damaging(0.905) TCGA-FB-AAPU-01 3 156866115 156866115 C T CCNL1 Missense_Mutation p.R499H 0.31 tolerated(0.13) unknown(0) TCGA-FB-AAPU-01 3 42917299 42917299 A C CYP8B1 Missense_Mutation p.W4G 0.42 deleterious(0.01) possibly_damaging(0.783) TCGA-FB-AAPU-01 4 128816239 128816239 G C PLK4 Missense_Mutation p.W898C 0.29 deleterious(0.02) benign(0.443) TCGA-FB-AAPU-01 4 41605916 41605916 G A LIMCH1 Silent p.L123L 0.33 TCGA-FB-AAPU-01 4 54248462 54248462 G C FIP1L1 Missense_Mutation p.G63A 0.38 tolerated(0.53) benign(0.012) TCGA-FB-AAPU-01 4 73205337 73205337 C G ADAMTS3 Missense_Mutation p.M245I 0.03 tolerated(0.12) benign(0) TCGA-FB-AAPU-01 4 73414444 73414444 C G ADAMTS3 Silent p.T85T 0.30 TCGA-FB-AAPU-01 5 112769663 112769663 G A TSSK1B Missense_Mutation p.R292W 0.36 tolerated_low_confidence(0.18) benign(0.006) TCGA-FB-AAPU-01 5 123984759 123984759 A T ZNF608 Missense_Mutation p.S440T 0.04 tolerated(0.22) benign(0.006) TCGA-FB-AAPU-01 5 140793564 140793564 C T PCDHGA10 Silent p.D274D 0.07 TCGA-FB-AAPU-01 5 147040819 147040819 G C JAKMIP2 Missense_Mutation p.R107G 0.50 deleterious(0) benign(0.066) TCGA-FB-AAPU-01 5 148206693 148206693 C G ADRB2 Missense_Mutation p.T100S 0.04 tolerated(0.88) benign(0.001) TCGA-FB-AAPU-01 5 57750426 57750426 A C PLK2 Nonsense_Mutation p.L681* 0.03 TCGA-FB-AAPU-01 6 105198307 105198307 C G HACE1 Missense_Mutation p.R751T 0.07 tolerated(0.32) possibly_damaging(0.626) TCGA-FB-AAPU-01 6 169639743 169639743 G A THBS2 Silent p.C360C 0.08 TCGA-FB-AAPU-01 6 37605121 37605121 G T MDGA1 3'UTR 0.33 TCGA-FB-AAPU-01 6 39866704 39866704 G A DAAM2 Silent p.A890A 0.19 TCGA-FB-AAPU-01 6 73834247 73834247 C A KCNQ5 Intron 0.32 TCGA-FB-AAPU-01 7 142459745 142459747 CAT - PRSS1 In_Frame_Del p.I108del 0.63 TCGA-FB-AAPU-01 7 150417597 150417597 A C GIMAP1 Missense_Mutation p.T169P 0.21 deleterious(0.01) benign(0.178) TCGA-FB-AAPU-01 7 150699033 150699033 C T NOS3 Missense_Mutation p.R543W 0.43 deleterious(0.04) probably_damaging(0.932) TCGA-FB-AAPU-01 7 4247761 4247761 G A SDK1 Missense_Mutation p.E1749K 0.06 tolerated(0.27) benign(0.082) TCGA-FB-AAPU-01 7 94293789 94293789 T A PEG10 Missense_Mutation p.N307K 0.22 deleterious(0.02) benign(0.11) TCGA-FB-AAPU-01 8 133184899 133184899 T A KCNQ3 Missense_Mutation p.Q362H 0.40 deleterious(0) possibly_damaging(0.867) TCGA-FB-AAPU-01 8 142432213 142432213 C T PTP4A3 5'UTR 0.60 TCGA-FB-AAPU-01 8 26722090 26722090 G A ADRA1A Missense_Mutation p.R133C 0.24 deleterious(0) probably_damaging(0.996) TCGA-FB-AAPU-01 8 28575489 28575489 C A EXTL3 Missense_Mutation p.P638H 0.25 deleterious(0) probably_damaging(0.999) TCGA-FB-AAPU-01 8 28717081 28717081 C A INTS9 Splice_Site p.X4_splice 0.24 TCGA-FB-AAPU-01 8 28908804 28908804 G T HMBOX1 3'UTR 0.33 TCGA-FB-AAPU-01 9 103090198 103090198 G C TEX10 Missense_Mutation p.Q558E 0.37 deleterious(0.02) probably_damaging(0.952) TCGA-FB-AAPU-01 9 107591266 107591282 CCAGAGGATGCTGTTGT - ABCA1 Frame_Shift_Del p.D677Vfs*2 0.35 TCGA-FB-AAPU-01 9 116837247 116837247 G C AMBP Missense_Mutation p.H110Q 0.29 deleterious(0.02) benign(0.196) TCGA-FB-AAPU-01 9 120053699 120053699 C A ASTN2 Missense_Mutation p.S179I 0.13 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-FB-AAPU-01 9 36170825 36170825 C T CCIN Silent p.V442V 0.28 TCGA-FB-AAPU-01 9 36351123 36351123 C G RNF38 Missense_Mutation p.E418Q 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-FB-AAPU-01 9 36351150 36351150 C T RNF38 Missense_Mutation p.E409K 0.31 deleterious(0.01) benign(0.437) TCGA-FB-AAPU-01 9 84528377 84528377 C G SPATA31D5P RNA 0.30 TCGA-FB-AAPU-01 X 105970227 105970227 C T RNF128 Silent p.A28A 0.27 TCGA-FB-AAPU-01 X 108921610 108921610 G T ACSL4 Missense_Mutation p.D271E 0.14 deleterious(0) probably_damaging(0.998) TCGA-FB-AAPU-01 X 118221500 118221500 C A KIAA1210 Missense_Mutation p.K1231N 0.20 tolerated(0.08) benign(0.101) TCGA-FB-AAPU-01 X 37850202 37850202 A T CXorf27 Missense_Mutation p.Q37L 0.34 tolerated(0.15) benign(0.266) TCGA-FB-AAPU-01 X 50136189 50136189 G T DGKK RNA 0.07 TCGA-FB-AAPU-01 X 50378166 50378166 C G SHROOM4 Missense_Mutation p.V303L 0.32 tolerated(0.18) benign(0.013) TCGA-FB-AAPY-01 10 125539748 125539748 G A CPXM2 Missense_Mutation p.R305W 0.10 deleterious(0) probably_damaging(0.939) TCGA-FB-AAPY-01 10 34663823 34663823 G A PARD3 Silent p.D549D 0.15 TCGA-FB-AAPY-01 10 72025941 72025941 G A NPFFR1 Missense_Mutation p.R72W 0.11 deleterious(0) probably_damaging(0.998) TCGA-FB-AAPY-01 11 123810641 123810641 C A OR4D5 Missense_Mutation p.F106L 0.15 tolerated(0.43) probably_damaging(0.952) TCGA-FB-AAPY-01 11 124412927 124412927 C A OR8B12 Missense_Mutation p.M208I 0.14 tolerated_low_confidence(0.1) benign(0.001) TCGA-FB-AAPY-01 11 132177680 132177680 C T NTM Silent p.A208A 0.15 TCGA-FB-AAPY-01 11 4594586 4594586 A T C11orf40 Missense_Mutation p.D86E 0.07 tolerated_low_confidence(0.67) possibly_damaging(0.621) TCGA-FB-AAPY-01 11 47681762 47681762 G A AGBL2 Missense_Mutation p.A891V 0.12 tolerated_low_confidence(1) benign(0.002) TCGA-FB-AAPY-01 11 64375284 64375284 G A NRXN2 Missense_Mutation p.T1508M 0.10 deleterious(0) benign(0.004) TCGA-FB-AAPY-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.11 deleterious(0) benign(0.361) TCGA-FB-AAPY-01 12 57578958 57578958 A G LRP1 Missense_Mutation p.I2145V 0.08 benign(0.026) TCGA-FB-AAPY-01 12 68720759 68720759 G A MDM1 Missense_Mutation p.P59L 0.13 deleterious(0) probably_damaging(1) TCGA-FB-AAPY-01 14 22928115 22928115 T A TRDJ3 Missense_Mutation p.F10I 0.16 unknown(0) TCGA-FB-AAPY-01 14 64735549 64735549 G T ESR2 Missense_Mutation p.L206I 0.15 deleterious(0) possibly_damaging(0.85) TCGA-FB-AAPY-01 15 25953443 25953443 G A ATP10A Silent p.D783D 0.12 TCGA-FB-AAPY-01 15 26026228 26026228 C T ATP10A Missense_Mutation p.A198T 0.11 deleterious(0.02) possibly_damaging(0.899) TCGA-FB-AAPY-01 16 57559977 57559977 C T CCDC102A Silent p.E216E 0.14 TCGA-FB-AAPY-01 17 11998898 11998898 C T MAP2K4 Missense_Mutation p.R134W 0.13 deleterious(0) benign(0.115) TCGA-FB-AAPY-01 17 39334112 39334112 C T KRTAP4-2 Missense_Mutation p.R102H 0.15 tolerated(0.09) unknown(0) TCGA-FB-AAPY-01 17 42882797 42882797 G A GJC1 Missense_Mutation p.T130M 0.13 deleterious(0.03) possibly_damaging(0.454) TCGA-FB-AAPY-01 17 61611293 61611293 C T KCNH6 Missense_Mutation p.A241V 0.17 tolerated(0.12) benign(0.005) TCGA-FB-AAPY-01 17 7577558 7577558 G - TP53 Frame_Shift_Del p.C242Afs*5 0.16 TCGA-FB-AAPY-01 18 10471951 10471951 C T APCDD1 Missense_Mutation p.L223F 0.17 tolerated(0.71) benign(0.033) TCGA-FB-AAPY-01 18 18562785 18562785 C T ROCK1 Missense_Mutation p.R833K 0.13 tolerated(0.46) benign(0.003) TCGA-FB-AAPY-01 18 48581229 48581229 C A SMAD4 Nonsense_Mutation p.S178* 0.17 TCGA-FB-AAPY-01 19 47258677 47258677 G A FKRP 5'UTR 0.10 TCGA-FB-AAPY-01 19 48789965 48789965 G A ZNF114 Missense_Mutation p.E362K 0.26 tolerated(0.79) possibly_damaging(0.635) TCGA-FB-AAPY-01 19 54649652 54649652 C T CNOT3 Missense_Mutation p.A237V 0.05 tolerated(0.11) benign(0.389) TCGA-FB-AAPY-01 1 11007918 11007918 C T C1orf127 Silent p.T758T 0.10 TCGA-FB-AAPY-01 1 160213756 160213756 C T DCAF8 Missense_Mutation p.A15T 0.13 tolerated_low_confidence(0.49) benign(0.001) TCGA-FB-AAPY-01 1 244574656 244574656 C T ADSS Silent p.A417A 0.16 TCGA-FB-AAPY-01 21 31864178 31864178 C T KRTAP19-3 Missense_Mutation p.R33H 0.12 tolerated_low_confidence(0.32) unknown(0) TCGA-FB-AAPY-01 2 241712602 241712602 C T KIF1A Missense_Mutation p.R370H 0.15 deleterious(0) probably_damaging(1) TCGA-FB-AAPY-01 3 193130095 193130096 - T ATP13A4 Frame_Shift_Ins p.M1027Nfs*4 0.11 TCGA-FB-AAPY-01 5 102509562 102509562 G A PPIP5K2 Silent p.V805V 0.14 TCGA-FB-AAPY-01 5 140176342 140176342 A G PCDHA2 Missense_Mutation p.D598G 0.12 deleterious_low_confidence(0.01) probably_damaging(0.94) TCGA-FB-AAPY-01 6 10764813 10764813 G A MAK Missense_Mutation p.R582W 0.14 deleterious(0.01) benign(0.031) TCGA-FB-AAPY-01 7 139756817 139756817 T A PARP12 Missense_Mutation p.D200V 0.13 tolerated(0.06) benign(0.125) TCGA-FB-AAPY-01 X 148072839 148072839 C T AFF2 Missense_Mutation p.R1305C 0.23 deleterious(0) probably_damaging(0.998) TCGA-FB-AAPZ-01 11 69978186 69978186 G A ANO1 Splice_Site p.X420_splice 0.25 TCGA-FB-AAPZ-01 12 10147796 10147796 C A CLEC1B Missense_Mutation p.R163L 0.05 deleterious(0) probably_damaging(0.99) TCGA-FB-AAPZ-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.34 deleterious(0.03) benign(0.376) TCGA-FB-AAPZ-01 12 5603793 5603793 G A NTF3 Missense_Mutation p.R151Q 0.43 deleterious(0) possibly_damaging(0.885) TCGA-FB-AAPZ-01 14 101004539 101004539 C T BEGAIN Missense_Mutation p.E517K 0.51 tolerated(0.09) benign(0.152) TCGA-FB-AAPZ-01 14 20215715 20215715 C A OR4Q3 Silent p.L43L 0.50 TCGA-FB-AAPZ-01 14 64681074 64681074 G A SYNE2 Missense_Mutation p.E6407K 0.48 probably_damaging(0.999) TCGA-FB-AAPZ-01 14 79175640 79175640 C T NRXN3 Silent p.G61G 0.50 TCGA-FB-AAPZ-01 15 25924552 25924552 C T ATP10A Missense_Mutation p.R1479Q 0.07 tolerated_low_confidence(0.57) benign(0.017) TCGA-FB-AAPZ-01 15 68570843 68570843 A G FEM1B Missense_Mutation p.S30G 0.67 tolerated(0.35) benign(0) TCGA-FB-AAPZ-01 16 20781387 20781387 C T ACSM3 Missense_Mutation p.R11C 0.61 tolerated_low_confidence(0.15) benign(0) TCGA-FB-AAPZ-01 16 29872467 29872467 T C CDIPT Missense_Mutation p.M98V 0.45 tolerated(0.24) benign(0.173) TCGA-FB-AAPZ-01 16 71423854 71423854 C T CALB2 3'UTR 0.36 TCGA-FB-AAPZ-01 16 77327045 77327045 C T ADAMTS18 Silent p.L1039L 0.35 TCGA-FB-AAPZ-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.68 TCGA-FB-AAPZ-01 18 18625398 18625398 G A ROCK1 Missense_Mutation p.L149F 0.10 deleterious(0) probably_damaging(1) TCGA-FB-AAPZ-01 18 3086037 3086046 TCTGTTATAA - MYOM1 Frame_Shift_Del p.L1414Rfs*14 0.16 TCGA-FB-AAPZ-01 18 44030346 44030346 G A RNF165 Missense_Mutation p.V235I 0.57 tolerated(0.16) probably_damaging(0.99) TCGA-FB-AAPZ-01 19 40520572 40520572 T C ZNF546 Silent p.G465G 0.40 TCGA-FB-AAPZ-01 19 43259170 43259170 G A PSG8 Missense_Mutation p.R320C 0.38 tolerated(0.16) possibly_damaging(0.788) TCGA-FB-AAPZ-01 19 43523094 43523094 C T PSG11 Silent p.L179L 0.40 TCGA-FB-AAPZ-01 19 55665406 55665406 T G TNNI3 Missense_Mutation p.T181P 0.40 deleterious(0.03) benign(0.126) TCGA-FB-AAPZ-01 1 155209725 155209725 G A GBA Missense_Mutation p.R87W 0.09 deleterious(0.01) probably_damaging(0.992) TCGA-FB-AAPZ-01 1 190067294 190067294 G A BRINP3 Missense_Mutation p.R719C 0.41 tolerated(0.07) possibly_damaging(0.543) TCGA-FB-AAPZ-01 1 22924191 22924191 C T EPHA8 Silent p.Y651Y 0.25 TCGA-FB-AAPZ-01 20 58381152 58381152 C T PHACTR3 Missense_Mutation p.P411S 0.43 deleterious(0) possibly_damaging(0.572) TCGA-FB-AAPZ-01 21 42080519 42080519 G A DSCAM Silent p.H74H 0.12 TCGA-FB-AAPZ-01 21 42749046 42749046 G T MX2 Missense_Mutation p.Q71H 0.42 tolerated(0.06) benign(0.028) TCGA-FB-AAPZ-01 2 165349469 165349469 C T GRB14 3'UTR 0.45 TCGA-FB-AAPZ-01 2 178990889 178990889 C G RBM45 Missense_Mutation p.Q471E 0.37 tolerated(0.21) possibly_damaging(0.581) TCGA-FB-AAPZ-01 2 210887849 210887849 A T KANSL1L Missense_Mutation p.L930I 0.19 deleterious(0) probably_damaging(0.999) TCGA-FB-AAPZ-01 2 39934299 39934299 G A TMEM178A Missense_Mutation p.V209M 0.06 deleterious(0) probably_damaging(0.979) TCGA-FB-AAPZ-01 2 85532397 85532397 G A TCF7L1 Missense_Mutation p.R287Q 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-FB-AAPZ-01 2 87085431 87085431 C T CD8B Missense_Mutation p.R51H 0.34 tolerated(0.18) benign(0.248) TCGA-FB-AAPZ-01 3 108572493 108572493 C A TRAT1 Nonsense_Mutation p.Y110* 0.12 TCGA-FB-AAPZ-01 3 49412957 49412957 G A RHOA Silent p.L22L 0.33 TCGA-FB-AAPZ-01 4 71275677 71275677 G A PROL1 Missense_Mutation p.R211H 0.26 tolerated_low_confidence(0.22) unknown(0) TCGA-FB-AAPZ-01 4 90035666 90035667 - A TIGD2 Frame_Shift_Ins p.Q517Tfs*6 0.17 TCGA-FB-AAPZ-01 5 129039960 129039960 G A ADAMTS19 Missense_Mutation p.R1057H 0.06 tolerated(0.07) benign(0.236) TCGA-FB-AAPZ-01 5 143853641 143853641 T C KCTD16 Silent p.P417P 0.34 TCGA-FB-AAPZ-01 5 43508741 43508741 G A C5orf34 Nonsense_Mutation p.R75* 0.37 TCGA-FB-AAPZ-01 5 88027589 88027589 C T MEF2C Missense_Mutation p.R274Q 0.37 deleterious(0) probably_damaging(0.997) TCGA-FB-AAPZ-01 6 46108833 46108833 A C ENPP4 Missense_Mutation p.M291L 0.31 tolerated(0.41) benign(0.002) TCGA-FB-AAPZ-01 7 18067464 18067464 G A PRPS1L1 5'UTR 0.30 TCGA-FB-AAPZ-01 7 35923505 35923505 G A SEPT7 Missense_Mutation p.R244H 0.04 tolerated(0.07) benign(0.113) TCGA-FB-AAPZ-01 7 47933504 47933504 G A PKD1L1 Silent p.F808F 0.38 TCGA-FB-AAPZ-01 X 37653065 37653065 T C CYBB Splice_Site p.X161_splice 0.13 TCGA-FB-AAQ0-01 11 111626165 111626165 G A PPP2R1B Missense_Mutation p.R233C 0.13 deleterious(0) probably_damaging(1) TCGA-FB-AAQ0-01 11 125763815 125763816 - TCAA PUS3 Nonsense_Mutation p.E437Dfs*2 0.43 TCGA-FB-AAQ0-01 11 30926703 30926703 C A DCDC1 Missense_Mutation p.L1371F 0.35 deleterious(0) possibly_damaging(0.765) TCGA-FB-AAQ0-01 12 124323215 124323215 C T DNAH10 Silent p.C1587C 0.04 TCGA-FB-AAQ0-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.26 deleterious(0.03) benign(0.376) TCGA-FB-AAQ0-01 13 113678964 113678964 G A MCF2L Missense_Mutation p.R57Q 0.06 deleterious(0.03) probably_damaging(0.994) TCGA-FB-AAQ0-01 14 24910070 24910073 AGTC - SDR39U1 Frame_Shift_Del p.D130Ffs*6 0.31 TCGA-FB-AAQ0-01 14 55004518 55004518 T G CGRRF1 Missense_Mutation p.L217V 0.28 tolerated(0.26) benign(0.051) TCGA-FB-AAQ0-01 14 95572489 95572489 T A DICER1 Missense_Mutation p.K959I 0.05 tolerated(0.1) probably_damaging(0.995) TCGA-FB-AAQ0-01 15 23811532 23811532 G A MKRN3 Silent p.A201A 0.38 TCGA-FB-AAQ0-01 15 79323771 79323771 G A RASGRF1 Silent p.Y411Y 0.11 TCGA-FB-AAQ0-01 16 15841926 15841926 C T MYH11 Missense_Mutation p.V727I 0.17 benign(0.333) TCGA-FB-AAQ0-01 16 27356274 27356274 C A IL4R Missense_Mutation p.N98K 0.25 tolerated(0.11) benign(0.087) TCGA-FB-AAQ0-01 16 56423115 56423115 G C AMFR Missense_Mutation p.H420D 0.03 deleterious(0.01) possibly_damaging(0.566) TCGA-FB-AAQ0-01 16 84806216 84806216 G A USP10 Missense_Mutation p.V690I 0.27 tolerated(0.1) probably_damaging(0.95) TCGA-FB-AAQ0-01 17 12883530 12883530 G A ARHGAP44 Missense_Mutation p.S640N 0.43 deleterious(0) possibly_damaging(0.754) TCGA-FB-AAQ0-01 17 30814578 30814578 C T CDK5R1 5'UTR 0.25 TCGA-FB-AAQ0-01 17 39670886 39670886 G C KRT15 Intron 0.05 TCGA-FB-AAQ0-01 17 40030190 40030190 G A ACLY Missense_Mutation p.S839L 0.37 tolerated(0.08) probably_damaging(0.973) TCGA-FB-AAQ0-01 17 7578235 7578235 T G TP53 Missense_Mutation p.Y205S 0.46 deleterious(0) possibly_damaging(0.523) TCGA-FB-AAQ0-01 18 31538269 31538269 G A NOL4 Silent p.D390D 0.04 TCGA-FB-AAQ0-01 19 31769290 31769290 A C TSHZ3 Missense_Mutation p.V470G 0.15 tolerated(0.38) possibly_damaging(0.664) TCGA-FB-AAQ0-01 19 31770055 31770055 C T TSHZ3 Missense_Mutation p.R215H 0.04 deleterious(0.03) probably_damaging(0.999) TCGA-FB-AAQ0-01 19 36104957 36104957 C G HAUS5 Missense_Mutation p.P72R 0.07 tolerated(0.17) probably_damaging(0.923) TCGA-FB-AAQ0-01 19 48833591 48833591 C G EMP3 Missense_Mutation p.A119G 0.32 deleterious(0) possibly_damaging(0.735) TCGA-FB-AAQ0-01 19 51020800 51020800 C T LRRC4B 3'UTR 0.11 TCGA-FB-AAQ0-01 19 54803682 54803682 T G LILRA3 Silent p.R48R 0.36 TCGA-FB-AAQ0-01 19 55349155 55349155 G A KIR2DS4 Silent p.K65K 0.06 TCGA-FB-AAQ0-01 19 56244180 56244180 C T NLRP9 Silent p.T339T 0.17 TCGA-FB-AAQ0-01 1 12251922 12251922 G T TNFRSF1B Silent p.G133G 0.23 TCGA-FB-AAQ0-01 1 156437921 156437921 G A MEF2D Missense_Mutation p.P473L 0.04 tolerated(0.18) benign(0.432) TCGA-FB-AAQ0-01 1 228238515 228238515 G A WNT3A Missense_Mutation p.D158N 0.07 tolerated(1) benign(0.113) TCGA-FB-AAQ0-01 1 228612733 228612733 C A HIST3H3 Missense_Mutation p.E98D 0.06 deleterious_low_confidence(0.03) possibly_damaging(0.682) TCGA-FB-AAQ0-01 1 242271086 242271086 C T PLD5 Missense_Mutation p.V376I 0.25 tolerated(0.2) benign(0.099) TCGA-FB-AAQ0-01 1 62455974 62455974 A C INADL Missense_Mutation p.I1269L 0.05 tolerated(0.1) probably_damaging(0.931) TCGA-FB-AAQ0-01 1 86961301 86961301 C T CLCA1 Missense_Mutation p.R686W 0.24 tolerated(0.06) benign(0.386) TCGA-FB-AAQ0-01 21 47355186 47355186 G A PCBP3 Silent p.P292P 0.19 TCGA-FB-AAQ0-01 2 179436797 179436797 G A TTN Missense_Mutation p.R24688C 0.24 TCGA-FB-AAQ0-01 2 215891634 215891634 C T ABCA12 Missense_Mutation p.A364T 0.20 tolerated(0.84) benign(0.002) TCGA-FB-AAQ0-01 2 86693827 86693827 C T KDM3A Missense_Mutation p.S447L 0.05 deleterious_low_confidence(0.02) benign(0.241) TCGA-FB-AAQ0-01 3 108746697 108746697 G T MORC1 Silent p.G535G 0.04 TCGA-FB-AAQ0-01 3 125649457 125649457 C T ALG1L Silent p.V97V 0.06 TCGA-FB-AAQ0-01 3 12869094 12869094 C T CAND2 Silent p.Y1122Y 0.23 TCGA-FB-AAQ0-01 3 140406735 140406735 C T TRIM42 Missense_Mutation p.S404F 0.28 deleterious(0.02) benign(0.352) TCGA-FB-AAQ0-01 3 154018452 154018452 C T DHX36 Missense_Mutation p.M464I 0.08 tolerated(0.34) benign(0.002) TCGA-FB-AAQ0-01 4 141543578 141543578 C T TBC1D9 Missense_Mutation p.R1191Q 0.09 tolerated_low_confidence(0.39) benign(0.007) TCGA-FB-AAQ0-01 4 22737642 22737642 G T GBA3 Missense_Mutation p.D33Y 0.34 deleterious(0) probably_damaging(1) TCGA-FB-AAQ0-01 5 140594777 140594777 C T PCDHB13 Missense_Mutation p.A361V 0.03 deleterious_low_confidence(0.03) benign(0.005) TCGA-FB-AAQ0-01 6 144759999 144759999 A C UTRN Missense_Mutation p.K454Q 0.31 tolerated(0.2) benign(0.008) TCGA-FB-AAQ0-01 6 155575617 155575617 C T TIAM2 Missense_Mutation p.R1460C 0.26 deleterious(0) probably_damaging(0.996) TCGA-FB-AAQ0-01 6 32820990 32820990 C T TAP1 Missense_Mutation p.V202I 0.09 tolerated(0.09) benign(0.002) TCGA-FB-AAQ0-01 6 44223304 44223304 A T SLC35B2 Silent p.G146G 0.33 TCGA-FB-AAQ0-01 7 141618819 141618819 C T OR9A4 Silent p.V48V 0.03 TCGA-FB-AAQ0-01 7 151933008 151933008 G A KMT2C Missense_Mutation p.S888F 0.05 probably_damaging(0.998) TCGA-FB-AAQ0-01 7 6628542 6628542 C G ZDHHC4 3'UTR 0.26 TCGA-FB-AAQ0-01 8 56015735 56015735 C A XKR4 Missense_Mutation p.S229R 0.28 tolerated(0.58) benign(0.169) TCGA-FB-AAQ0-01 8 59404241 59404241 G C CYP7A1 Silent p.P436P 0.32 TCGA-FB-AAQ0-01 8 69033248 69033248 C T PREX2 Missense_Mutation p.R1230W 0.33 deleterious(0) benign(0.306) TCGA-FB-AAQ0-01 8 77765105 77765105 G A ZFHX4 Missense_Mutation p.R1983H 0.30 possibly_damaging(0.715) TCGA-FB-AAQ0-01 9 124967022 124967022 C T LHX6 3'UTR 0.54 TCGA-FB-AAQ0-01 9 139929195 139929195 T A C9orf139 Missense_Mutation p.C88S 0.49 deleterious_low_confidence(0) benign(0.291) TCGA-FB-AAQ0-01 X 32486730 32486730 C T DMD Missense_Mutation p.R1016Q 0.11 benign(0.001) TCGA-FB-AAQ1-01 10 47087166 47087166 C T NPY4R Missense_Mutation p.S128F 0.09 deleterious(0) probably_damaging(1) TCGA-FB-AAQ1-01 11 129800938 129800938 G A PRDM10 Silent p.D501D 0.19 TCGA-FB-AAQ1-01 11 2411735 2411735 G A CD81 Missense_Mutation p.A54T 0.20 tolerated(0.12) probably_damaging(0.924) TCGA-FB-AAQ1-01 11 61549225 61549226 - C MYRF Frame_Shift_Ins p.R983Pfs*15 0.22 TCGA-FB-AAQ1-01 12 1136977 1136977 C A ERC1 5'UTR 0.14 TCGA-FB-AAQ1-01 12 124397822 124397822 G A DNAH10 Missense_Mutation p.A3320T 0.28 probably_damaging(0.998) TCGA-FB-AAQ1-01 12 13717533 13717533 C T GRIN2B Missense_Mutation p.R880H 0.16 tolerated(0.05) benign(0.018) TCGA-FB-AAQ1-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.19 deleterious(0) benign(0.361) TCGA-FB-AAQ1-01 12 62148670 62148670 G T FAM19A2 Missense_Mutation p.A81D 0.22 deleterious(0.01) benign(0.155) TCGA-FB-AAQ1-01 14 23244654 23244654 T A SLC7A7 Missense_Mutation p.N365I 0.12 tolerated(0.15) benign(0.394) TCGA-FB-AAQ1-01 14 39868915 39868915 G A FBXO33 Silent p.T491T 0.13 TCGA-FB-AAQ1-01 16 32077592 32077592 C T IGHV3OR16-9 Silent p.T69T 0.11 TCGA-FB-AAQ1-01 17 62891285 62891285 C T LRRC37A3 Silent p.E697E 0.19 TCGA-FB-AAQ1-01 17 7579470 7579471 - G TP53 Frame_Shift_Ins p.V73Rfs*76 0.30 TCGA-FB-AAQ1-01 18 2666912 2666912 G A SMCHD1 Silent p.S102S 0.19 TCGA-FB-AAQ1-01 19 19655586 19655586 C T CILP2 Silent p.Y744Y 0.12 TCGA-FB-AAQ1-01 19 52217079 52217079 C T HAS1 Silent p.A446A 0.13 TCGA-FB-AAQ1-01 19 58600197 58600197 C A ZSCAN18 Silent p.L193L 0.13 TCGA-FB-AAQ1-01 19 8564207 8564207 G A PRAM1 Missense_Mutation p.A162V 0.10 tolerated(0.3) benign(0.007) TCGA-FB-AAQ1-01 19 9577789 9577789 G A ZNF560 Missense_Mutation p.R612C 0.10 tolerated(0.09) possibly_damaging(0.722) TCGA-FB-AAQ1-01 1 152282228 152282228 G A FLG Nonsense_Mutation p.R1712* 0.18 TCGA-FB-AAQ1-01 1 154316375 154316375 G A ATP8B2 Missense_Mutation p.A622T 0.18 deleterious(0) possibly_damaging(0.821) TCGA-FB-AAQ1-01 1 40236249 40236249 C T OXCT2 Missense_Mutation p.A227T 0.10 tolerated(0.16) possibly_damaging(0.839) TCGA-FB-AAQ1-01 20 3065237 3065237 G A AVP Silent p.G28G 0.12 TCGA-FB-AAQ1-01 20 49195731 49195731 C T PTPN1 Silent p.S243S 0.12 TCGA-FB-AAQ1-01 21 31964845 31964845 C T KRTAP6-3 Silent p.Y20Y 0.23 TCGA-FB-AAQ1-01 22 25294312 25294312 C T SGSM1 Missense_Mutation p.T854M 0.23 tolerated(0.11) benign(0.007) TCGA-FB-AAQ1-01 22 44384997 44384997 A G SAMM50 Missense_Mutation p.Y361C 0.25 tolerated(0.06) possibly_damaging(0.895) TCGA-FB-AAQ1-01 2 197187274 197187274 C T HECW2 Missense_Mutation p.R271H 0.11 deleterious(0) probably_damaging(0.999) TCGA-FB-AAQ1-01 2 202900003 202900003 C T FZD7 Silent p.P211P 0.05 TCGA-FB-AAQ1-01 2 238940869 238940869 G A UBE2F Missense_Mutation p.V140I 0.05 tolerated(0.32) benign(0.016) TCGA-FB-AAQ1-01 2 43787408 43787408 G A THADA Silent p.L810L 0.24 TCGA-FB-AAQ1-01 3 165547794 165547794 G T BCHE Missense_Mutation p.T343N 0.09 tolerated(0.06) probably_damaging(0.924) TCGA-FB-AAQ1-01 3 36759634 36759634 G A DCLK3 Silent p.G540G 0.18 TCGA-FB-AAQ1-01 3 49662573 49662574 - GTA BSN In_Frame_Ins p.V131dup 0.29 TCGA-FB-AAQ1-01 3 52442006 52442006 T G BAP1 Missense_Mutation p.M115L 0.17 tolerated(1) benign(0.021) TCGA-FB-AAQ1-01 4 184930914 184930914 G A STOX2 Missense_Mutation p.R308Q 0.22 deleterious(0) probably_damaging(0.97) TCGA-FB-AAQ1-01 4 42127607 42127607 G A BEND4 Missense_Mutation p.P380L 0.26 tolerated_low_confidence(1) probably_damaging(0.982) TCGA-FB-AAQ1-01 4 90034245 90034245 C A TIGD2 Silent p.S40S 0.13 TCGA-FB-AAQ1-01 5 147510862 147510862 T C SPINK5 Missense_Mutation p.I1032T 0.17 tolerated(0.54) benign(0.268) TCGA-FB-AAQ1-01 5 36985035 36985035 A G NIPBL Missense_Mutation p.I585V 0.07 tolerated_low_confidence(0.53) benign(0) TCGA-FB-AAQ1-01 5 55203287 55203287 C T IL31RA Silent p.G451G 0.14 TCGA-FB-AAQ1-01 6 110763856 110763856 A G SLC22A16 Silent p.A258A 0.23 TCGA-FB-AAQ1-01 6 31737463 31737463 G A VWA7 Missense_Mutation p.R436W 0.11 tolerated(0.06) benign(0.135) TCGA-FB-AAQ1-01 6 31748522 31748522 G A VARS Silent p.T919T 0.18 TCGA-FB-AAQ1-01 6 33690903 33690903 G T IP6K3 Nonsense_Mutation p.S276* 0.10 TCGA-FB-AAQ1-01 7 103180720 103180720 C T RELN Missense_Mutation p.R2285H 0.21 deleterious(0.02) probably_damaging(0.994) TCGA-FB-AAQ1-01 7 127975996 127975996 A G RBM28 Silent p.D238D 0.21 TCGA-FB-AAQ1-01 7 150556084 150556084 G A AOC1 Missense_Mutation p.D602N 0.16 tolerated(0.68) benign(0.004) TCGA-FB-AAQ1-01 8 25890660 25890660 G A EBF2 Silent p.C164C 0.19 TCGA-FB-AAQ1-01 8 73848256 73848256 C T KCNB2 Silent p.D222D 0.21 TCGA-FB-AAQ1-01 9 131256879 131256879 G T ODF2 Missense_Mutation p.D615Y 0.24 deleterious(0) probably_damaging(0.935) TCGA-FB-AAQ2-01 11 110007605 110007605 C T ZC3H12C Missense_Mutation p.A80V 0.20 tolerated(0.52) benign(0) TCGA-FB-AAQ2-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.30 deleterious(0) benign(0.361) TCGA-FB-AAQ2-01 12 57910556 57910556 G A DDIT3 3'UTR 0.16 TCGA-FB-AAQ2-01 12 6939687 6939687 G A LEPREL2 Silent p.A273A 0.11 TCGA-FB-AAQ2-01 12 81647110 81647110 G A ACSS3 Missense_Mutation p.A582T 0.21 deleterious(0.01) benign(0.289) TCGA-FB-AAQ2-01 13 46287859 46287859 C T SPERT Silent p.H233H 0.16 TCGA-FB-AAQ2-01 14 68233050 68233050 C T ZFYVE26 Missense_Mutation p.E1969K 0.22 deleterious(0) probably_damaging(0.988) TCGA-FB-AAQ2-01 15 42362977 42362977 G A PLA2G4D Missense_Mutation p.R661W 0.33 deleterious(0.02) benign(0.019) TCGA-FB-AAQ2-01 15 74743165 74743165 C A UBL7 Missense_Mutation p.A170S 0.04 tolerated(0.09) benign(0.1) TCGA-FB-AAQ2-01 15 79350772 79350772 G T RASGRF1 Missense_Mutation p.H145Q 0.12 deleterious(0) probably_damaging(0.994) TCGA-FB-AAQ2-01 16 27367137 27367166 GAGCCCTTCGAGCAGCACCTCCTGCTGGGC - IL4R In_Frame_Del p.E227_G236del 0.15 TCGA-FB-AAQ2-01 16 55362807 55362807 G A IRX6 Missense_Mutation p.R306H 0.22 deleterious(0.02) benign(0.413) TCGA-FB-AAQ2-01 17 7577106 7577106 G A TP53 Missense_Mutation p.P278S 0.36 deleterious(0.03) probably_damaging(1) TCGA-FB-AAQ2-01 17 78039368 78039368 C T CCDC40 Missense_Mutation p.R509C 0.06 deleterious(0) probably_damaging(1) TCGA-FB-AAQ2-01 18 13621266 13621266 C T LDLRAD4 Missense_Mutation p.P111L 0.21 tolerated(0.22) benign(0.064) TCGA-FB-AAQ2-01 18 59483165 59483165 C T RNF152 Missense_Mutation p.V178I 0.26 tolerated(0.37) benign(0.023) TCGA-FB-AAQ2-01 19 1272618 1272618 T G CIRBP 3'UTR 0.26 TCGA-FB-AAQ2-01 19 30935540 30935540 G A ZNF536 Silent p.A357A 0.21 TCGA-FB-AAQ2-01 19 38188048 38188048 G A ZNF607 3'UTR 0.34 TCGA-FB-AAQ2-01 19 39016037 39016037 G A RYR1 Silent p.T3507T 0.24 TCGA-FB-AAQ2-01 19 47193872 47193872 T C PRKD2 Silent p.E598E 0.17 TCGA-FB-AAQ2-01 19 49079301 49079301 C T SULT2B1 Missense_Mutation p.R59W 0.23 tolerated(0.06) benign(0.021) TCGA-FB-AAQ2-01 19 50412073 50412073 G A NUP62 Missense_Mutation p.A331V 0.18 deleterious(0.05) benign(0.283) TCGA-FB-AAQ2-01 1 176845741 176845741 C T ASTN1 Missense_Mutation p.R1132Q 0.23 deleterious(0) probably_damaging(0.951) TCGA-FB-AAQ2-01 1 74507071 74507071 C T LRRIQ3 Missense_Mutation p.R515H 0.17 tolerated(0.47) benign(0.021) TCGA-FB-AAQ2-01 20 57769239 57769239 G A ZNF831 Silent p.P1055P 0.08 TCGA-FB-AAQ2-01 2 1426896 1426896 G T TPO Missense_Mutation p.M58I 0.20 tolerated(0.19) benign(0.005) TCGA-FB-AAQ2-01 2 180308122 180308122 G A ZNF385B Missense_Mutation p.A424V 0.21 tolerated(0.16) benign(0.268) TCGA-FB-AAQ2-01 2 220136561 220136561 C T TUBA4B RNA 0.24 TCGA-FB-AAQ2-01 3 123813705 123813705 C G KALRN Missense_Mutation p.D7E 0.22 tolerated_low_confidence(0.22) unknown(0) TCGA-FB-AAQ2-01 3 141292025 141292025 A G RASA2 Missense_Mutation p.I441V 0.20 tolerated(1) benign(0.003) TCGA-FB-AAQ2-01 3 9506122 9506122 A G SETD5 Silent p.P830P 0.23 TCGA-FB-AAQ2-01 5 13900472 13900472 G A DNAH5 Missense_Mutation p.P701L 0.21 possibly_damaging(0.908) TCGA-FB-AAQ2-01 5 161128572 161128572 C T GABRA6 Silent p.S385S 0.22 TCGA-FB-AAQ2-01 5 5239387 5239387 C T ADAMTS16 Nonsense_Mutation p.Q760* 0.22 TCGA-FB-AAQ2-01 5 94803623 94803623 G A TTC37 Missense_Mutation p.R1523C 0.06 deleterious(0) probably_damaging(0.991) TCGA-FB-AAQ2-01 7 116960785 116960785 C A WNT2 Missense_Mutation p.S49I 0.21 tolerated(0.15) possibly_damaging(0.454) TCGA-FB-AAQ2-01 7 148427298 148427298 C A CUL1 Silent p.I28I 0.05 TCGA-FB-AAQ2-01 8 133150166 133150166 C T KCNQ3 Missense_Mutation p.D556N 0.24 deleterious(0) probably_damaging(0.959) TCGA-FB-AAQ2-01 8 1857468 1857468 C T ARHGEF10 Missense_Mutation p.H659Y 0.28 tolerated(0.61) benign(0.005) TCGA-FB-AAQ2-01 9 104187759 104187759 G A ALDOB Missense_Mutation p.R259C 0.23 deleterious(0.03) probably_damaging(0.998) TCGA-FB-AAQ2-01 9 130649855 130649855 C T ST6GALNAC6 Silent p.S240S 0.23 TCGA-FB-AAQ2-01 9 21974695 21974695 G - CDKN2A Frame_Shift_Del p.Y44* 0.33 TCGA-FB-AAQ2-01 9 75775747 75775747 T G ANXA1 Missense_Mutation p.I138S 0.23 tolerated(0.05) benign(0.106) TCGA-FB-AAQ2-01 9 95179346 95179346 T A OMD Missense_Mutation p.E165D 0.22 deleterious(0) probably_damaging(0.963) TCGA-FB-AAQ2-01 X 148055040 148055040 G A AFF2 Missense_Mutation p.A1103T 0.26 deleterious(0) probably_damaging(0.978) TCGA-FB-AAQ2-01 X 15554529 15554529 G A BMX Missense_Mutation p.D401N 0.29 tolerated(0.09) benign(0.023) TCGA-FB-AAQ2-01 X 47039289 47039289 G - RBM10 Frame_Shift_Del p.L304Ffs*4 0.34 TCGA-FB-AAQ3-01 10 100503755 100503755 A - HPSE2 Frame_Shift_Del p.F223Lfs*3 0.23 TCGA-FB-AAQ3-01 10 129216680 129216680 G A DOCK1 Missense_Mutation p.D1502N 0.20 deleterious(0.04) probably_damaging(0.948) TCGA-FB-AAQ3-01 11 7818171 7818171 C T OR5P2 Missense_Mutation p.E107K 0.19 deleterious(0) probably_damaging(0.953) TCGA-FB-AAQ3-01 12 116413394 116413394 C A MED13L Missense_Mutation p.W1838C 0.12 deleterious(0) probably_damaging(0.999) TCGA-FB-AAQ3-01 12 130648664 130648664 G A FZD10 Missense_Mutation p.A393T 0.16 tolerated(0.15) probably_damaging(0.998) TCGA-FB-AAQ3-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.13 deleterious(0) benign(0.361) TCGA-FB-AAQ3-01 12 49360058 49360058 C T WNT10B Silent p.R330R 0.19 TCGA-FB-AAQ3-01 12 80651774 80651774 T A OTOGL Missense_Mutation p.D618E 0.21 deleterious(0) probably_damaging(0.998) TCGA-FB-AAQ3-01 12 81769706 81769706 C G PPFIA2 Missense_Mutation p.E334Q 0.07 deleterious(0.01) benign(0.331) TCGA-FB-AAQ3-01 12 82752352 82752352 C T METTL25 Missense_Mutation p.A3V 0.14 deleterious_low_confidence(0) possibly_damaging(0.619) TCGA-FB-AAQ3-01 12 94658986 94658986 G T PLXNC1 Silent p.P1194P 0.15 TCGA-FB-AAQ3-01 14 100380996 100380996 G A EML1 Missense_Mutation p.A591T 0.20 tolerated(0.28) benign(0.129) TCGA-FB-AAQ3-01 15 29347038 29347038 G T APBA2 Missense_Mutation p.Q317H 0.12 deleterious_low_confidence(0) benign(0.221) TCGA-FB-AAQ3-01 16 23702206 23702206 G C ERN2 Nonsense_Mutation p.Y957* 0.14 TCGA-FB-AAQ3-01 16 87866457 87866457 C T SLC7A5 3'UTR 0.05 TCGA-FB-AAQ3-01 17 29226555 29226555 G A TEFM Nonsense_Mutation p.Q239* 0.14 TCGA-FB-AAQ3-01 17 35960421 35960421 C G SYNRG Missense_Mutation p.R36T 0.08 tolerated_low_confidence(0.06) benign(0.154) TCGA-FB-AAQ3-01 17 39978680 39978680 G T FKBP10 3'UTR 0.12 TCGA-FB-AAQ3-01 17 7578397 7578398 - G TP53 Frame_Shift_Ins p.H178Pfs*3 0.28 TCGA-FB-AAQ3-01 19 18331319 18331319 G A PDE4C Missense_Mutation p.T201M 0.17 deleterious(0.02) possibly_damaging(0.466) TCGA-FB-AAQ3-01 19 19656676 19656676 C T CILP2 Missense_Mutation p.P1108S 0.13 tolerated(0.2) benign(0.009) TCGA-FB-AAQ3-01 19 3976682 3976682 T A EEF2 Missense_Mutation p.H816L 0.16 deleterious(0) probably_damaging(0.999) TCGA-FB-AAQ3-01 19 57335649 57335649 C A PEG3 Missense_Mutation p.K125N 0.18 tolerated(0.14) benign(0.253) TCGA-FB-AAQ3-01 19 57988734 57988734 C A ZNF772 5'UTR 0.17 TCGA-FB-AAQ3-01 1 205589059 205589059 A C ELK4 Intron 0.20 TCGA-FB-AAQ3-01 1 39784230 39784230 G A MACF1 Missense_Mutation p.M1301I 0.10 possibly_damaging(0.717) TCGA-FB-AAQ3-01 1 4832475 4832475 C T AJAP1 Silent p.N351N 0.11 TCGA-FB-AAQ3-01 20 3065264 3065264 C T AVP Silent p.A19A 0.18 TCGA-FB-AAQ3-01 2 164467285 164467285 C T FIGN Missense_Mutation p.D353N 0.17 deleterious(0.01) possibly_damaging(0.548) TCGA-FB-AAQ3-01 2 79255473 79255473 C T REG3G 3'UTR 0.17 TCGA-FB-AAQ3-01 4 143033802 143033802 G A INPP4B Silent p.A723A 0.17 TCGA-FB-AAQ3-01 5 121786604 121786604 C T SNCAIP Missense_Mutation p.P688S 0.18 tolerated(0.27) benign(0.057) TCGA-FB-AAQ3-01 5 137288332 137288332 G A FAM13B Missense_Mutation p.R617W 0.15 deleterious(0) possibly_damaging(0.726) TCGA-FB-AAQ3-01 5 140223264 140223264 C T PCDHA8 Silent p.G786G 0.17 TCGA-FB-AAQ3-01 5 140798660 140798660 C T PCDHGB7 Missense_Mutation p.R412W 0.04 deleterious(0) probably_damaging(1) TCGA-FB-AAQ3-01 5 79336068 79336069 - T THBS4 Frame_Shift_Ins p.E88* 0.17 TCGA-FB-AAQ3-01 6 100061933 100061933 G A PRDM13 Silent p.P474P 0.20 TCGA-FB-AAQ3-01 6 149983251 149983251 C A LATS1 Nonsense_Mutation p.E1003* 0.24 TCGA-FB-AAQ3-01 6 26124629 26124629 G A HIST1H2AC Missense_Mutation p.E57K 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FB-AAQ3-01 6 73935126 73935126 G T KHDC1L Silent p.A2A 0.16 TCGA-FB-AAQ3-01 7 36194002 36194002 G C EEPD1 Missense_Mutation p.K23N 0.17 tolerated(0.12) benign(0.113) TCGA-FB-AAQ3-01 8 75761394 75761394 C A PI15 Missense_Mutation p.P228Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-FB-AAQ3-01 9 125424096 125424096 C A OR1L1 Silent p.I34I 0.19 TCGA-FB-AAQ3-01 X 138678769 138678769 C T MCF2 Missense_Mutation p.R815H 0.17 deleterious(0.01) probably_damaging(0.939) TCGA-FB-AAQ3-01 X 27766129 27766129 A G DCAF8L2 Missense_Mutation p.T373A 0.16 tolerated(0.24) benign(0.026) TCGA-FB-AAQ3-01 X 30269201 30269201 G A MAGEB1 Silent p.R197R 0.18 TCGA-FB-AAQ3-01 X 48931491 48931491 G A PRAF2 Silent p.F52F 0.23 TCGA-FB-AAQ3-01 X 5821524 5821524 C T NLGN4X Missense_Mutation p.V399M 0.10 deleterious(0) possibly_damaging(0.878) TCGA-FB-AAQ6-01 10 101166530 101166530 C A GOT1 Missense_Mutation p.G126V 0.33 tolerated(0.39) probably_damaging(0.968) TCGA-FB-AAQ6-01 10 101563916 101563916 A G ABCC2 Silent p.L450L 0.17 TCGA-FB-AAQ6-01 10 119013857 119013857 G A SLC18A2 Intron 0.26 TCGA-FB-AAQ6-01 10 50532116 50532116 G A C10orf71 Missense_Mutation p.R509H 0.29 tolerated(0.11) benign(0.051) TCGA-FB-AAQ6-01 10 53458724 53458724 G T CSTF2T Missense_Mutation p.H196N 0.32 tolerated(0.94) benign(0.157) TCGA-FB-AAQ6-01 11 109294680 109294680 C T C11orf87 Silent p.S107S 0.26 TCGA-FB-AAQ6-01 11 134253672 134253672 G A B3GAT1 Missense_Mutation p.R175C 0.17 deleterious(0.03) benign(0.046) TCGA-FB-AAQ6-01 11 17794252 17794252 G A KCNC1 Intron 0.04 TCGA-FB-AAQ6-01 11 18738333 18738333 G A IGSF22 Silent p.S396S 0.16 TCGA-FB-AAQ6-01 11 63665747 63665747 A G MARK2 Missense_Mutation p.N111S 0.26 tolerated(0.05) possibly_damaging(0.689) TCGA-FB-AAQ6-01 11 8284970 8284970 G A LMO1 5'UTR 0.17 TCGA-FB-AAQ6-01 11 88027031 88027031 C T CTSC 3'UTR 0.35 TCGA-FB-AAQ6-01 12 112632807 112632807 G A HECTD4 Silent p.I2731I 0.25 TCGA-FB-AAQ6-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.22 deleterious(0) possibly_damaging(0.479) TCGA-FB-AAQ6-01 12 40020079 40020079 G A C12orf40 5'UTR 0.37 TCGA-FB-AAQ6-01 12 64609707 64609707 C T C12orf66 Missense_Mutation p.R91H 0.23 deleterious(0.01) probably_damaging(0.964) TCGA-FB-AAQ6-01 12 75601178 75601178 C T KCNC2 Missense_Mutation p.A196T 0.28 tolerated(0.37) benign(0.057) TCGA-FB-AAQ6-01 14 59793694 59793695 - A DAAM1 Frame_Shift_Ins p.M455Nfs*7 0.25 TCGA-FB-AAQ6-01 15 31334358 31334358 C A TRPM1 Missense_Mutation p.S645I 0.33 deleterious(0.02) benign(0.41) TCGA-FB-AAQ6-01 15 43621570 43621570 G C LCMT2 Missense_Mutation p.A373G 0.32 deleterious(0.01) benign(0.098) TCGA-FB-AAQ6-01 15 78921685 78921685 T G CHRNB4 Missense_Mutation p.H321P 0.28 deleterious(0) probably_damaging(1) TCGA-FB-AAQ6-01 15 85384098 85384098 C A ALPK3 Silent p.R732R 0.33 TCGA-FB-AAQ6-01 16 10524582 10524582 T C ATF7IP2 Silent p.V35V 0.31 TCGA-FB-AAQ6-01 17 37564572 37564572 G A MED1 Missense_Mutation p.P1301L 0.29 deleterious_low_confidence(0) unknown(0) TCGA-FB-AAQ6-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.20 deleterious(0) probably_damaging(1) TCGA-FB-AAQ6-01 18 48591891 48591891 G T SMAD4 Nonsense_Mutation p.G352* 0.38 TCGA-FB-AAQ6-01 18 48591892 48591892 G T SMAD4 Missense_Mutation p.G352V 0.38 deleterious(0) probably_damaging(1) TCGA-FB-AAQ6-01 19 3162865 3162865 G A GNA15 Missense_Mutation p.D325N 0.31 deleterious(0.01) benign(0.174) TCGA-FB-AAQ6-01 19 40901569 40901569 C T PRX Missense_Mutation p.R897Q 0.25 deleterious(0.01) benign(0.417) TCGA-FB-AAQ6-01 19 54081219 54081219 A G ZNF331 3'UTR 0.21 TCGA-FB-AAQ6-01 19 55220640 55220640 C T AC098784.2 3'Flank 0.25 TCGA-FB-AAQ6-01 19 9064926 9064926 G A MUC16 Missense_Mutation p.A7507V 0.29 unknown(0) TCGA-FB-AAQ6-01 19 9271674 9271674 C T ZNF317 Silent p.C451C 0.25 TCGA-FB-AAQ6-01 1 110738217 110738217 G A SLC6A17 Missense_Mutation p.C501Y 0.51 deleterious(0) probably_damaging(1) TCGA-FB-AAQ6-01 1 151634647 151634647 C T SNX27 Silent p.Y269Y 0.21 TCGA-FB-AAQ6-01 1 152681682 152681683 - AGCTCTGGGGGCTGCTGT LCE4A In_Frame_Ins p.S44delinsRALGAAV 0.09 TCGA-FB-AAQ6-01 1 155205555 155205555 G T GBA Missense_Mutation p.N435K 0.18 deleterious(0) probably_damaging(0.978) TCGA-FB-AAQ6-01 1 159856380 159856380 G A CCDC19 Nonsense_Mutation p.Q230* 0.08 TCGA-FB-AAQ6-01 1 169510549 169510549 G A F5 Missense_Mutation p.P1260L 0.26 tolerated_low_confidence(0.06) benign(0.003) TCGA-FB-AAQ6-01 1 186017951 186017951 A T HMCN1 Missense_Mutation p.N2186I 0.08 probably_damaging(0.984) TCGA-FB-AAQ6-01 1 230492737 230492737 C T PGBD5 Missense_Mutation p.R152H 0.19 deleterious(0.01) probably_damaging(0.974) TCGA-FB-AAQ6-01 1 233482283 233482283 A - MLK4 Frame_Shift_Del p.M302* 0.24 TCGA-FB-AAQ6-01 1 24859625 24859625 C G RCAN3 Missense_Mutation p.P141R 0.56 deleterious(0) probably_damaging(1) TCGA-FB-AAQ6-01 20 11899817 11899817 G A BTBD3 Missense_Mutation p.G137E 0.26 deleterious(0) possibly_damaging(0.568) TCGA-FB-AAQ6-01 20 24646110 24646110 C T SYNDIG1 Silent p.I249I 0.39 TCGA-FB-AAQ6-01 21 32253686 32253686 A G KRTAP11-1 Missense_Mutation p.L53P 0.20 deleterious(0.02) probably_damaging(1) TCGA-FB-AAQ6-01 21 34969588 34969588 G A CRYZL1 Nonsense_Mutation p.Q266* 0.32 TCGA-FB-AAQ6-01 21 41741051 41741051 G T DSCAM Missense_Mutation p.S210R 0.03 deleterious(0.04) probably_damaging(1) TCGA-FB-AAQ6-01 21 45833885 45833885 C T TRPM2 Missense_Mutation p.T1025M 0.03 deleterious(0) probably_damaging(1) TCGA-FB-AAQ6-01 22 17083077 17083077 G A TPTEP1 RNA 0.18 TCGA-FB-AAQ6-01 22 29130542 29130542 G C CHEK2 Missense_Mutation p.S56R 0.27 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-FB-AAQ6-01 22 37273798 37273798 G A NCF4 3'UTR 0.32 TCGA-FB-AAQ6-01 22 41573306 41573306 C G EP300 Missense_Mutation p.T1864S 0.25 benign(0.006) TCGA-FB-AAQ6-01 2 170411659 170411660 - A FASTKD1 Frame_Shift_Ins p.A397Cfs*4 0.28 TCGA-FB-AAQ6-01 2 179253838 179253838 T C OSBPL6 Silent p.N778N 0.32 TCGA-FB-AAQ6-01 2 215645418 215645418 T C BARD1 Missense_Mutation p.T394A 0.14 tolerated(0.13) benign(0.196) TCGA-FB-AAQ6-01 2 85617280 85617280 A C ELMOD3 Missense_Mutation p.K279Q 0.03 tolerated(0.95) benign(0.041) TCGA-FB-AAQ6-01 3 132207849 132207849 C G DNAJC13 Missense_Mutation p.A1151G 0.28 deleterious(0.01) benign(0.167) TCGA-FB-AAQ6-01 3 183703357 183703357 G A ABCC5 Intron 0.31 TCGA-FB-AAQ6-01 3 30732996 30732996 C T TGFBR2 Missense_Mutation p.R562C 0.47 deleterious(0) probably_damaging(1) TCGA-FB-AAQ6-01 3 42251691 42251691 T G TRAK1 Intron 0.45 TCGA-FB-AAQ6-01 3 48462686 48462686 C T PLXNB1 Missense_Mutation p.M587I 0.45 tolerated(0.75) benign(0.02) TCGA-FB-AAQ6-01 5 140799542 140799542 G A PCDHGB7 Missense_Mutation p.A706T 0.34 tolerated(0.59) benign(0.046) TCGA-FB-AAQ6-01 5 150891812 150891812 G A FAT2 Missense_Mutation p.A3940V 0.23 benign(0.432) TCGA-FB-AAQ6-01 5 175111377 175111377 G T HRH2 Intron 0.30 TCGA-FB-AAQ6-01 5 37125474 37125474 C G C5orf42 Missense_Mutation p.D2890H 0.03 deleterious(0) possibly_damaging(0.532) TCGA-FB-AAQ6-01 6 163510311 163510311 C T PACRG Nonsense_Mutation p.R162* 0.43 TCGA-FB-AAQ6-01 6 28227596 28227596 C T NKAPL Silent p.D149D 0.26 TCGA-FB-AAQ6-01 6 64412409 64412409 G T PHF3 Missense_Mutation p.M1037I 0.15 tolerated(0.09) probably_damaging(0.994) TCGA-FB-AAQ6-01 6 64413449 64413449 G A PHF3 Silent p.L1085L 0.12 TCGA-FB-AAQ6-01 6 64413463 64413463 G A PHF3 Missense_Mutation p.G1090E 0.11 tolerated(1) benign(0.001) TCGA-FB-AAQ6-01 6 64413504 64413504 G C PHF3 Missense_Mutation p.D1104H 0.08 deleterious(0) probably_damaging(0.994) TCGA-FB-AAQ6-01 6 7229470 7229470 G A RREB1 Missense_Mutation p.A380T 0.19 tolerated(0.55) benign(0.008) TCGA-FB-AAQ6-01 7 137092622 137092622 G A DGKI Silent p.H981H 0.27 TCGA-FB-AAQ6-01 7 141478409 141478409 A G TAS2R4 Missense_Mutation p.I41V 0.26 tolerated(0.55) benign(0.026) TCGA-FB-AAQ6-01 7 151917775 151917775 G C KMT2C Nonsense_Mutation p.S1182* 0.28 TCGA-FB-AAQ6-01 7 2951891 2951891 G A CARD11 Missense_Mutation p.T1020M 0.36 tolerated(0.08) benign(0.001) TCGA-FB-AAQ6-01 7 66785098 66785098 A C STAG3L4 RNA 0.14 TCGA-FB-AAQ6-01 8 120633644 120633644 C T ENPP2 Silent p.V136V 0.30 TCGA-FB-AAQ6-01 8 139268947 139268947 G A FAM135B Missense_Mutation p.T118M 0.07 deleterious(0) probably_damaging(0.932) TCGA-FB-AAQ6-01 8 37728914 37728914 C A RAB11FIP1 Missense_Mutation p.A1136S 0.26 tolerated(0.18) benign(0.13) TCGA-FB-AAQ6-01 8 55533850 55533850 C T RP1 Silent p.H108H 0.34 TCGA-FB-AAQ6-01 8 75928804 75928804 G C CRISPLD1 Silent p.G244G 0.12 TCGA-FB-AAQ6-01 9 5064981 5064981 A G JAK2 Silent p.K385K 0.46 TCGA-FB-AAQ6-01 X 129265770 129265770 C A AIFM1 Missense_Mutation p.D485Y 0.61 deleterious(0) probably_damaging(0.999) TCGA-FB-AAQ6-01 Y 16942001 16942001 C T NLGN4Y Silent p.N401N 0.25 TCGA-FZ-5919-01 10 55582841 55582842 - A PCDH15 Frame_Shift_Ins p.V1551Cfs*13 0.11 TCGA-FZ-5919-01 11 101984938 101984938 C T YAP1 Missense_Mutation p.P129S 0.03 deleterious(0.04) possibly_damaging(0.75) TCGA-FZ-5919-01 11 20673951 20673951 C T SLC6A5 Silent p.I729I 0.03 TCGA-FZ-5919-01 11 22849412 22849412 T G SVIP Missense_Mutation p.K21N 0.05 deleterious(0.01) probably_damaging(0.994) TCGA-FZ-5919-01 11 66454976 66454976 G A SPTBN2 Missense_Mutation p.P2215L 0.10 tolerated(0.27) benign(0) TCGA-FZ-5919-01 11 6652947 6652947 C T DCHS1 Missense_Mutation p.S1192N 0.05 tolerated(0.15) possibly_damaging(0.842) TCGA-FZ-5919-01 12 110765385 110765385 A G ATP2A2 Missense_Mutation p.M220V 0.04 tolerated(0.57) benign(0.001) TCGA-FZ-5919-01 12 125612743 125612743 A C AACS Missense_Mutation p.N449T 0.15 deleterious(0) probably_damaging(0.982) TCGA-FZ-5919-01 12 15673188 15673188 G A PTPRO Silent p.V611V 0.20 TCGA-FZ-5919-01 12 15673198 15673198 G C PTPRO Missense_Mutation p.D615H 0.18 deleterious(0) possibly_damaging(0.471) TCGA-FZ-5919-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.15 deleterious(0) benign(0.361) TCGA-FZ-5919-01 12 48372412 48372412 C T COL2A1 Missense_Mutation p.E955K 0.09 unknown(0) TCGA-FZ-5919-01 12 58207947 58207947 G A AVIL Silent p.Y43Y 0.06 TCGA-FZ-5919-01 12 69260780 69260780 G A CPM Missense_Mutation p.T279M 0.11 deleterious(0) probably_damaging(0.996) TCGA-FZ-5919-01 12 99071230 99071230 C A APAF1 Silent p.S607S 0.03 TCGA-FZ-5919-01 13 46066374 46066374 A T COG3 Silent p.T392T 0.08 TCGA-FZ-5919-01 13 95095781 95095781 G T DCT Nonsense_Mutation p.Y463* 0.12 TCGA-FZ-5919-01 15 82335639 82335639 G A MEX3B Silent p.S524S 0.05 TCGA-FZ-5919-01 16 28509280 28509280 G A APOBR Missense_Mutation p.G973D 0.13 deleterious(0.01) probably_damaging(0.982) TCGA-FZ-5919-01 16 3063292 3063292 C T CLDN9 5'UTR 0.10 TCGA-FZ-5919-01 16 4836091 4836091 C T SEPT12 Missense_Mutation p.G61D 0.09 deleterious(0) probably_damaging(1) TCGA-FZ-5919-01 16 80667060 80667060 G A CDYL2 Silent p.Y230Y 0.03 TCGA-FZ-5919-01 17 49043606 49043606 C A SPAG9 3'UTR 0.07 TCGA-FZ-5919-01 17 7348796 7348796 G A CHRNB1 Intron 0.05 TCGA-FZ-5919-01 17 7578413 7578413 C G TP53 Missense_Mutation p.V173L 0.13 deleterious(0) probably_damaging(0.998) TCGA-FZ-5919-01 17 80361874 80361874 C T OGFOD3 Missense_Mutation p.R213H 0.06 deleterious(0) probably_damaging(1) TCGA-FZ-5919-01 19 43411981 43411981 G T PSG6 Silent p.T244T 0.09 TCGA-FZ-5919-01 19 49355519 49355530 GTCTCTCTTAAG - PLEKHA4 In_Frame_Del p.R462_L465del 0.12 TCGA-FZ-5919-01 19 7810584 7810584 G A CD209 Nonsense_Mutation p.Q190* 0.05 TCGA-FZ-5919-01 1 110031576 110031576 G A ATXN7L2 Silent p.E297E 0.04 TCGA-FZ-5919-01 1 204589069 204589069 C T LRRN2 Missense_Mutation p.A18T 0.08 tolerated(0.33) unknown(0) TCGA-FZ-5919-01 1 34285425 34285425 C T CSMD2 Missense_Mutation p.V365I 0.05 tolerated(0.38) benign(0.078) TCGA-FZ-5919-01 1 34329991 34329991 G A HMGB4 Missense_Mutation p.D67N 0.09 deleterious(0.03) probably_damaging(1) TCGA-FZ-5919-01 20 30526969 30526969 C T TTLL9 Silent p.V381V 0.10 TCGA-FZ-5919-01 20 6093196 6093196 T G FERMT1 Missense_Mutation p.K154Q 0.05 tolerated(0.18) probably_damaging(0.916) TCGA-FZ-5919-01 2 179576918 179576918 C T TTN Silent p.P9213P 0.04 TCGA-FZ-5919-01 2 179643640 179643640 G A TTN Missense_Mutation p.P1390L 0.05 TCGA-FZ-5919-01 2 211532923 211532923 G T CPS1 Missense_Mutation p.G1345V 0.07 deleterious(0) probably_damaging(1) TCGA-FZ-5919-01 3 119217506 119217506 A G TIMMDC1 5'UTR 0.04 TCGA-FZ-5919-01 3 122990615 122990615 G A SEC22A 3'UTR 0.05 TCGA-FZ-5919-01 3 178917478 178917478 G A PIK3CA Missense_Mutation p.G118D 0.13 tolerated(0.05) possibly_damaging(0.704) TCGA-FZ-5919-01 3 196387199 196387199 C T NRROS Missense_Mutation p.R229W 0.04 deleterious(0.01) possibly_damaging(0.724) TCGA-FZ-5919-01 5 68669707 68669707 C T RAD17 Silent p.G31G 0.12 TCGA-FZ-5919-01 6 46129388 46129388 G T ENPP5 Missense_Mutation p.S370Y 0.03 deleterious(0) possibly_damaging(0.907) TCGA-FZ-5919-01 6 89388128 89388128 G C RNGTT Missense_Mutation p.Q484E 0.03 tolerated(0.97) benign(0) TCGA-FZ-5919-01 7 4153009 4153009 G A SDK1 Missense_Mutation p.V1175M 0.23 tolerated(0.4) benign(0.088) TCGA-FZ-5919-01 7 42005706 42005706 G A GLI3 Missense_Mutation p.R989W 0.15 deleterious(0.01) possibly_damaging(0.816) TCGA-FZ-5919-01 7 43540839 43540839 C T HECW1 Silent p.Y1183Y 0.10 TCGA-FZ-5919-01 7 5923595 5923595 C T OCM Missense_Mutation p.A90V 0.03 deleterious(0.02) possibly_damaging(0.556) TCGA-FZ-5919-01 8 22960677 22960677 G A TNFRSF10C Missense_Mutation p.V15I 0.09 tolerated_low_confidence(0.06) benign(0.002) TCGA-FZ-5919-01 9 116812071 116812071 G T ZNF618 Missense_Mutation p.C737F 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-FZ-5919-01 9 36217507 36217507 T C GNE Missense_Mutation p.Y706C 0.03 deleterious_low_confidence(0) probably_damaging(1) TCGA-FZ-5919-01 X 39933048 39933048 G A BCOR Silent p.N517N 0.03 TCGA-FZ-5919-01 X 48690597 48690597 C T PCSK1N Missense_Mutation p.R90Q 0.06 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-FZ-5919-01 X 76225928 76225928 G C MIR325 5'Flank 0.04 TCGA-FZ-5919-01 X 77112307 77112307 T A MAGT1 Missense_Mutation p.I231F 0.07 deleterious(0) possibly_damaging(0.847) TCGA-FZ-5920-01 11 122931494 122931494 A G HSPA8 Missense_Mutation p.L73P 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FZ-5920-01 11 123597658 123597658 C G ZNF202 Missense_Mutation p.D332H 0.10 tolerated(0.13) benign(0.236) TCGA-FZ-5920-01 11 55873188 55873188 A G OR8H2 Missense_Mutation p.T224A 0.09 tolerated(0.31) benign(0.084) TCGA-FZ-5920-01 11 65546346 65546356 GCCAGCAAAGA - AP5B1 Frame_Shift_Del p.L537Pfs*67 0.16 TCGA-FZ-5920-01 12 106532400 106532400 T C NUAK1 Missense_Mutation p.D11G 0.45 tolerated_low_confidence(0.38) benign(0.001) TCGA-FZ-5920-01 12 118105363 118105363 G A KSR2 Missense_Mutation p.R363C 0.27 deleterious(0.01) possibly_damaging(0.795) TCGA-FZ-5920-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.31 deleterious(0) benign(0.361) TCGA-FZ-5920-01 12 51685907 51685907 G T BIN2 Missense_Mutation p.A328E 0.07 tolerated(0.1) possibly_damaging(0.478) TCGA-FZ-5920-01 12 54367353 54367353 G A HOXC11 Missense_Mutation p.V110I 0.21 tolerated(0.45) benign(0.352) TCGA-FZ-5920-01 15 24924064 24924064 G A NPAP1 Missense_Mutation p.G1017D 0.09 deleterious_low_confidence(0) possibly_damaging(0.661) TCGA-FZ-5920-01 15 29400578 29400578 G A APBA2 Missense_Mutation p.V675M 0.20 deleterious(0) probably_damaging(0.955) TCGA-FZ-5920-01 16 28515269 28515269 C T IL27 Missense_Mutation p.R45K 0.21 tolerated(0.28) benign(0.005) TCGA-FZ-5920-01 16 57601845 57601845 T C GPR114 Missense_Mutation p.L300P 0.09 deleterious(0.02) probably_damaging(0.993) TCGA-FZ-5920-01 17 48631710 48631710 G A SPATA20 Missense_Mutation p.V686M 0.12 tolerated(0.1) possibly_damaging(0.694) TCGA-FZ-5920-01 17 74288692 74288692 C A QRICH2 Missense_Mutation p.D540Y 0.11 tolerated(0.27) benign(0.038) TCGA-FZ-5920-01 17 7578464 7578476 GGGTGCCGGGCGG - TP53 Frame_Shift_Del p.P152Afs*14 0.29 TCGA-FZ-5920-01 17 7707727 7707728 - GAG DNAH2 In_Frame_Ins p.E3044dup 0.31 TCGA-FZ-5920-01 19 12059966 12059966 C G ZNF700 Nonsense_Mutation p.S376* 0.24 TCGA-FZ-5920-01 19 12223527 12223527 C T ZNF788 Missense_Mutation p.R389C 0.21 deleterious(0.03) benign(0) TCGA-FZ-5920-01 19 12502436 12502436 G T ZNF799 Missense_Mutation p.S259Y 0.09 deleterious(0) possibly_damaging(0.571) TCGA-FZ-5920-01 19 16024596 16024596 G A CYP4F11 Silent p.R507R 0.10 TCGA-FZ-5920-01 19 30935498 30935498 C T ZNF536 Silent p.N343N 0.10 TCGA-FZ-5920-01 19 38958370 38958370 G A RYR1 Missense_Mutation p.R1100H 0.07 probably_damaging(1) TCGA-FZ-5920-01 19 7527146 7527146 G A ARHGEF18 Missense_Mutation p.R666Q 0.11 tolerated(0.21) benign(0.042) TCGA-FZ-5920-01 1 222716971 222716971 C T HHIPL2 Silent p.S294S 0.19 TCGA-FZ-5920-01 1 247875276 247875276 C T OR6F1 Missense_Mutation p.R261H 0.16 deleterious(0.02) probably_damaging(0.954) TCGA-FZ-5920-01 1 34068135 34068135 C A CSMD2 Missense_Mutation p.G2184W 0.04 tolerated(0.1) probably_damaging(0.954) TCGA-FZ-5920-01 1 43888983 43888983 A G SZT2 Missense_Mutation p.I751V 0.14 tolerated(0.15) possibly_damaging(0.593) TCGA-FZ-5920-01 20 44838993 44838993 G T CDH22 Silent p.V413V 0.16 TCGA-FZ-5920-01 20 62172886 62172886 C T SRMS Missense_Mutation p.R345H 0.14 tolerated(0.55) benign(0.004) TCGA-FZ-5920-01 21 31692255 31692255 G A KRTAP26-1 Silent p.S33S 0.14 TCGA-FZ-5920-01 22 40813466 40813466 G A MKL1 Missense_Mutation p.A699V 0.06 tolerated(0.18) benign(0.001) TCGA-FZ-5920-01 2 136071117 136071117 G A ZRANB3 Missense_Mutation p.A303V 0.10 tolerated(0.38) benign(0.013) TCGA-FZ-5920-01 2 145147456 145147456 C T ZEB2 Silent p.S1069S 0.11 TCGA-FZ-5920-01 2 145156919 145156919 G A ZEB2 Missense_Mutation p.A612V 0.09 tolerated(0.13) probably_damaging(0.998) TCGA-FZ-5920-01 2 179614364 179614364 C A TTN Intron 0.11 TCGA-FZ-5920-01 2 196729627 196729627 C T DNAH7 Missense_Mutation p.R2251H 0.22 tolerated(1) benign(0) TCGA-FZ-5920-01 2 207804319 207804319 G A CPO 5'UTR 0.12 TCGA-FZ-5920-01 2 26101176 26101176 G A ASXL2 5'UTR 0.11 TCGA-FZ-5920-01 2 37259800 37259801 - T HEATR5B Frame_Shift_Ins p.N1111Kfs*9 0.17 TCGA-FZ-5920-01 3 169637339 169637339 T C SAMD7 Missense_Mutation p.I18T 0.09 deleterious(0) benign(0.026) TCGA-FZ-5920-01 3 433473 433473 T A CHL1 Nonsense_Mutation p.Y969* 0.08 TCGA-FZ-5920-01 3 50141711 50141711 A G RBM5 Missense_Mutation p.K200E 0.22 deleterious(0.03) probably_damaging(0.982) TCGA-FZ-5920-01 4 109784477 109784477 T C COL25A1 Missense_Mutation p.K384E 0.12 deleterious(0.03) probably_damaging(0.997) TCGA-FZ-5920-01 4 174450243 174450243 G A HAND2 Silent p.P66P 0.11 TCGA-FZ-5920-01 4 17579127 17579127 C G LAP3 Silent p.V13V 0.12 TCGA-FZ-5920-01 4 86950350 86950350 C A MAPK10 Missense_Mutation p.G418C 0.06 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-FZ-5920-01 5 110819841 110819841 G A CAMK4 Missense_Mutation p.E367K 0.08 tolerated(0.14) benign(0.007) TCGA-FZ-5920-01 5 32268842 32268842 A T MTMR12 Missense_Mutation p.L183Q 0.18 tolerated(0.05) probably_damaging(0.99) TCGA-FZ-5920-01 6 13644862 13644862 G A RANBP9 Missense_Mutation p.R343W 0.12 deleterious(0) probably_damaging(0.993) TCGA-FZ-5920-01 6 147525792 147525792 C T STXBP5 Nonsense_Mutation p.Q42* 0.09 TCGA-FZ-5920-01 6 26027283 26027283 C T HIST1H4B Silent p.V66V 0.14 TCGA-FZ-5920-01 6 28539892 28539892 A G SCAND3 Silent p.P1258P 0.03 TCGA-FZ-5920-01 6 56357816 56357816 A T DST Silent p.L4199L 0.13 TCGA-FZ-5920-01 7 100491142 100491142 C T ACHE Missense_Mutation p.A238T 0.08 deleterious(0) probably_damaging(0.979) TCGA-FZ-5920-01 7 150776054 150776054 C T FASTK Missense_Mutation p.R187H 0.26 tolerated(0.13) benign(0.009) TCGA-FZ-5920-01 7 35271146 35271146 C T TBX20 Missense_Mutation p.R287Q 0.09 deleterious(0) probably_damaging(0.994) TCGA-FZ-5920-01 7 38433731 38433731 C T AMPH Silent p.A494A 0.08 TCGA-FZ-5920-01 7 73249275 73249275 G C WBSCR27 Missense_Mutation p.A179G 0.19 tolerated(0.2) benign(0.147) TCGA-FZ-5920-01 7 98453722 98453722 C T TMEM130 Silent p.A212A 0.11 TCGA-FZ-5920-01 8 12957788 12957788 C T DLC1 Silent p.A686A 0.10 TCGA-FZ-5920-01 8 13948053 13948056 CTGT - SGCZ Frame_Shift_Del p.T279Cfs*19 0.16 TCGA-FZ-5920-01 8 15601118 15601118 C T TUSC3 Missense_Mutation p.R312W 0.03 deleterious(0) probably_damaging(0.978) TCGA-FZ-5920-01 8 28314447 28314447 C T FBXO16 Missense_Mutation p.V115M 0.08 deleterious(0) probably_damaging(0.998) TCGA-FZ-5920-01 9 126125189 126125189 G A CRB2 Missense_Mutation p.C47Y 0.11 deleterious(0) unknown(0) TCGA-FZ-5920-01 9 21974679 21974679 G - CDKN2A Frame_Shift_Del p.Q50Rfs*3 0.32 TCGA-FZ-5920-01 9 72131100 72131100 G A APBA1 Missense_Mutation p.R343C 0.06 deleterious(0) possibly_damaging(0.847) TCGA-FZ-5920-01 9 97864014 97864014 A G FANCC Missense_Mutation p.L551P 0.09 deleterious(0) probably_damaging(0.973) TCGA-FZ-5920-01 X 70389238 70389238 G A NLGN3 Missense_Mutation p.R613Q 0.26 deleterious(0.01) possibly_damaging(0.821) TCGA-FZ-5920-01 X 75397752 75397752 G A PBDC1 3'UTR 0.16 TCGA-FZ-5921-01 10 106899195 106899195 G A SORCS3 Missense_Mutation p.R418Q 0.08 tolerated(0.07) benign(0.025) TCGA-FZ-5921-01 10 13234464 13234464 C T MCM10 Silent p.S548S 0.09 TCGA-FZ-5921-01 10 6557092 6557092 C T PRKCQ Silent p.S2S 0.08 TCGA-FZ-5921-01 10 74770789 74770789 C T P4HA1 Missense_Mutation p.D459N 0.07 tolerated(0.05) probably_damaging(0.986) TCGA-FZ-5921-01 11 102706890 102706890 G T MMP3 Missense_Mutation p.H467Q 0.12 tolerated(0.13) benign(0.042) TCGA-FZ-5921-01 11 93836096 93836096 T C HEPHL1 Silent p.Y864Y 0.09 TCGA-FZ-5921-01 12 117662844 117662844 C T NOS1 Missense_Mutation p.R1302Q 0.09 deleterious(0.03) probably_damaging(1) TCGA-FZ-5921-01 12 131621519 131621519 G T GPR133 Missense_Mutation p.G799V 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-FZ-5921-01 12 131621523 131621523 G A GPR133 Silent p.L800L 0.06 TCGA-FZ-5921-01 12 131621557 131621557 G C GPR133 Missense_Mutation p.E812Q 0.07 deleterious(0) probably_damaging(0.986) TCGA-FZ-5921-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.14 deleterious(0) possibly_damaging(0.479) TCGA-FZ-5921-01 12 39763966 39763966 C T KIF21A Missense_Mutation p.A48T 0.20 deleterious(0) possibly_damaging(0.897) TCGA-FZ-5921-01 12 78513106 78513106 A G NAV3 Missense_Mutation p.S1044G 0.12 deleterious(0) probably_damaging(0.995) TCGA-FZ-5921-01 13 23910739 23910739 G A SACS Nonsense_Mutation p.R2426* 0.22 TCGA-FZ-5921-01 14 105419058 105419058 G A AHNAK2 Silent p.A910A 0.08 TCGA-FZ-5921-01 14 59930958 59930958 C T GPR135 Silent p.T329T 0.05 TCGA-FZ-5921-01 14 62541981 62541981 G A SYT16 Missense_Mutation p.E289K 0.05 tolerated(0.06) benign(0.254) TCGA-FZ-5921-01 14 62542083 62542083 G A SYT16 Missense_Mutation p.D323N 0.06 deleterious(0.01) possibly_damaging(0.796) TCGA-FZ-5921-01 15 25924728 25924728 G T ATP10A Silent p.T1420T 0.17 TCGA-FZ-5921-01 15 50193367 50193368 - T ATP8B4 Frame_Shift_Ins p.Q738Afs*33 0.14 TCGA-FZ-5921-01 15 68612671 68612671 G A ITGA11 Missense_Mutation p.S823F 0.11 deleterious(0.01) possibly_damaging(0.701) TCGA-FZ-5921-01 15 74636146 74636146 G A CYP11A1 Silent p.D271D 0.17 TCGA-FZ-5921-01 15 90931566 90931566 C T IQGAP1 5'UTR 0.13 TCGA-FZ-5921-01 16 51173233 51173233 C A SALL1 Missense_Mutation p.G967V 0.16 deleterious(0.05) benign(0.196) TCGA-FZ-5921-01 16 81095233 81095233 G A C16orf46 Silent p.L241L 0.08 TCGA-FZ-5921-01 16 81095234 81095234 C G C16orf46 Silent p.V240V 0.08 TCGA-FZ-5921-01 17 43194110 43194110 G A PLCD3 Silent p.C434C 0.08 TCGA-FZ-5921-01 17 71382685 71382685 A G SDK2 Missense_Mutation p.L1466P 0.15 deleterious(0) probably_damaging(0.971) TCGA-FZ-5921-01 17 74289257 74289257 C A QRICH2 Missense_Mutation p.L351F 0.18 tolerated(0.7) benign(0.307) TCGA-FZ-5921-01 17 7578475 7578475 G A TP53 Missense_Mutation p.P152L 0.16 tolerated(0.08) probably_damaging(0.91) TCGA-FZ-5921-01 17 76455227 76455227 G A DNAH17 Silent p.A3225A 0.09 TCGA-FZ-5921-01 17 8092931 8092931 G C C17orf59 Missense_Mutation p.C176W 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.817) TCGA-FZ-5921-01 18 7036029 7036029 G A LAMA1 Missense_Mutation p.T599M 0.08 tolerated(0.06) benign(0.16) TCGA-FZ-5921-01 19 22156518 22156518 G T ZNF208 Missense_Mutation p.L440I 0.08 deleterious(0) probably_damaging(0.995) TCGA-FZ-5921-01 19 33467438 33467438 C T C19orf40 Silent p.I166I 0.14 TCGA-FZ-5921-01 19 36050067 36050067 G C ATP4A Silent p.R361R 0.11 TCGA-FZ-5921-01 19 40382654 40382654 A C FCGBP Nonsense_Mutation p.L3411* 0.13 TCGA-FZ-5921-01 19 47570533 47570533 C T ZC3H4 Missense_Mutation p.V998M 0.07 unknown(0) TCGA-FZ-5921-01 19 51411614 51411614 C T KLK4 Splice_Site p.X204_splice 0.08 TCGA-FZ-5921-01 1 11561569 11561569 G A PTCHD2 Missense_Mutation p.V174I 0.08 tolerated_low_confidence(0.27) benign(0.001) TCGA-FZ-5921-01 1 151265430 151265432 CTC - PI4KB In_Frame_Del p.E795del 0.26 TCGA-FZ-5921-01 1 156213592 156213592 C T PAQR6 3'UTR 0.15 TCGA-FZ-5921-01 1 158908939 158908939 C T PYHIN1 Missense_Mutation p.P161S 0.14 tolerated(0.13) benign(0.123) TCGA-FZ-5921-01 1 16955029 16955029 C T CROCCP2 3'Flank 0.11 TCGA-FZ-5921-01 1 169586589 169586589 C T SELP Nonsense_Mutation p.W53* 0.08 TCGA-FZ-5921-01 1 248201829 248201829 G A OR2L2 Missense_Mutation p.G87E 0.08 deleterious(0.02) benign(0.292) TCGA-FZ-5921-01 1 85561704 85561704 G A WDR63 Splice_Site p.X421_splice 0.06 TCGA-FZ-5921-01 20 13098235 13098235 C T SPTLC3 Missense_Mutation p.H339Y 0.06 deleterious(0) probably_damaging(1) TCGA-FZ-5921-01 20 44574946 44574946 C T PCIF1 Silent p.F512F 0.07 TCGA-FZ-5921-01 22 43272926 43272926 G A PACSIN2 Silent p.T373T 0.21 TCGA-FZ-5921-01 22 44559756 44559756 G A PARVB Missense_Mutation p.A355T 0.09 deleterious(0) probably_damaging(0.98) TCGA-FZ-5921-01 2 119600717 119600717 G A EN1 Missense_Mutation p.R326C 0.08 deleterious(0) probably_damaging(0.998) TCGA-FZ-5921-01 2 119604052 119604052 C T EN1 Missense_Mutation p.G231D 0.15 tolerated(0.18) benign(0.011) TCGA-FZ-5921-01 2 141245239 141245239 G A LRP1B Nonsense_Mutation p.R3064* 0.08 TCGA-FZ-5921-01 2 242814188 242814188 G A CXXC11 Missense_Mutation p.A161T 0.08 tolerated(0.13) benign(0.082) TCGA-FZ-5921-01 2 26536714 26536714 G A GPR113 Missense_Mutation p.P397L 0.08 deleterious(0) benign(0.085) TCGA-FZ-5921-01 2 39440588 39440588 C T CDKL4 Missense_Mutation p.V106I 0.05 tolerated(0.96) benign(0.003) TCGA-FZ-5921-01 2 44055164 44055164 G A ABCG5 Missense_Mutation p.R198W 0.09 deleterious(0) probably_damaging(1) TCGA-FZ-5921-01 2 70903959 70903959 G A ADD2 Missense_Mutation p.A521V 0.08 deleterious(0.01) possibly_damaging(0.861) TCGA-FZ-5921-01 3 109050853 109050853 C T DPPA4 Silent p.E68E 0.08 TCGA-FZ-5921-01 3 12983364 12983364 C T IQSEC1 Missense_Mutation p.V23I 0.12 deleterious_low_confidence(0.02) benign(0.021) TCGA-FZ-5921-01 3 142218556 142218556 C A ATR Nonsense_Mutation p.E1765* 0.11 TCGA-FZ-5921-01 3 38592495 38592495 C T SCN5A Missense_Mutation p.D1790N 0.10 deleterious(0) probably_damaging(0.999) TCGA-FZ-5921-01 4 123164205 123164205 T G KIAA1109 Missense_Mutation p.L1575R 0.06 probably_damaging(0.926) TCGA-FZ-5921-01 4 156135406 156135406 G A NPY2R Silent p.P105P 0.08 TCGA-FZ-5921-01 4 46042946 46042946 A G GABRG1 3'UTR 0.09 TCGA-FZ-5921-01 4 74719545 74719545 C T PF4V1 Missense_Mutation p.T49I 0.13 tolerated(0.08) probably_damaging(0.936) TCGA-FZ-5921-01 4 79847745 79847745 G A PAQR3 Missense_Mutation p.S211L 0.05 deleterious(0.01) benign(0.028) TCGA-FZ-5921-01 4 81967430 81967430 G A BMP3 Silent p.R285R 0.08 TCGA-FZ-5921-01 4 8214499 8214499 C T SH3TC1 Missense_Mutation p.R107W 0.11 deleterious(0) probably_damaging(1) TCGA-FZ-5921-01 5 113698895 113698895 C T KCNN2 Silent p.F141F 0.06 TCGA-FZ-5921-01 5 1294328 1294328 C T TERT Missense_Mutation p.G225R 0.09 tolerated(0.57) benign(0) TCGA-FZ-5921-01 5 150696194 150696194 G A SLC36A2 3'UTR 0.22 TCGA-FZ-5921-01 5 153054198 153054198 C T GRIA1 Missense_Mutation p.R290W 0.12 deleterious(0) probably_damaging(0.972) TCGA-FZ-5921-01 5 156378788 156378788 C T TIMD4 Silent p.T138T 0.07 TCGA-FZ-5921-01 5 179248115 179248115 C G SQSTM1 Missense_Mutation p.P60R 0.21 tolerated(0.44) benign(0.088) TCGA-FZ-5921-01 6 69666614 69666614 A C BAI3 Silent p.R480R 0.07 TCGA-FZ-5921-01 6 73919774 73919774 C T RP11-257K9.8 3'UTR 0.14 TCGA-FZ-5921-01 6 76022446 76022446 C T FILIP1 Silent p.R1034R 0.09 TCGA-FZ-5921-01 6 76751711 76751711 C T IMPG1 Missense_Mutation p.R67Q 0.07 deleterious(0.02) benign(0.22) TCGA-FZ-5921-01 7 115891866 115891866 C T TES Missense_Mutation p.A252V 0.12 deleterious(0.02) probably_damaging(1) TCGA-FZ-5921-01 7 128850261 128850261 G T SMO Missense_Mutation p.E508D 0.16 tolerated(0.14) benign(0.039) TCGA-FZ-5921-01 7 27196029 27196029 C T HOXA7 Missense_Mutation p.A46T 0.22 tolerated(0.08) benign(0.206) TCGA-FZ-5921-01 7 76028102 76028102 G A SRCRB4D Missense_Mutation p.T163M 0.07 deleterious(0.03) possibly_damaging(0.507) TCGA-FZ-5921-01 8 21560393 21560393 G A GFRA2 Missense_Mutation p.T381M 0.17 tolerated(0.11) benign(0.022) TCGA-FZ-5921-01 8 77767609 77767609 G A ZFHX4 Missense_Mutation p.E2818K 0.15 probably_damaging(0.98) TCGA-FZ-5921-01 9 125797765 125797765 C T GPR21 Missense_Mutation p.S307F 0.15 deleterious(0) probably_damaging(0.989) TCGA-FZ-5921-01 9 126133673 126133673 T A CRB2 Missense_Mutation p.L751H 0.09 tolerated(0.54) possibly_damaging(0.869) TCGA-FZ-5921-01 9 990182 990182 C T DMRT3 Missense_Mutation p.S199F 0.07 deleterious(0) benign(0.135) TCGA-FZ-5921-01 9 990458 990458 C G DMRT3 Nonsense_Mutation p.S291* 0.07 TCGA-FZ-5921-01 9 990482 990482 C T DMRT3 Missense_Mutation p.S299F 0.07 deleterious(0.01) benign(0.039) TCGA-FZ-5921-01 9 990525 990525 C G DMRT3 Missense_Mutation p.I313M 0.05 tolerated_low_confidence(0.08) benign(0.023) TCGA-FZ-5921-01 9 990557 990557 C T DMRT3 Missense_Mutation p.S324L 0.05 deleterious_low_confidence(0) benign(0.057) TCGA-FZ-5921-01 9 990581 990581 C T DMRT3 Missense_Mutation p.S332L 0.05 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-FZ-5921-01 9 990814 990814 C T DMRT3 Missense_Mutation p.P410S 0.11 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-FZ-5921-01 9 990923 990923 C T DMRT3 Missense_Mutation p.S446L 0.08 deleterious_low_confidence(0.02) benign(0.004) TCGA-FZ-5921-01 9 990980 990980 C G DMRT3 Missense_Mutation p.S465C 0.07 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-FZ-5921-01 9 991066 991066 C G DMRT3 3'UTR 0.06 TCGA-FZ-5921-01 X 131212649 131212649 T G FRMD7 Missense_Mutation p.K466Q 0.07 tolerated(0.26) benign(0.009) TCGA-FZ-5921-01 X 153416268 153416268 C T OPN1LW Missense_Mutation p.R85C 0.06 deleterious(0) probably_damaging(1) TCGA-FZ-5922-01 10 129347620 129347620 T G NPS 5'UTR 0.17 TCGA-FZ-5922-01 10 129847884 129847884 G A PTPRE Missense_Mutation p.R125H 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-FZ-5922-01 10 5808002 5808002 C T GDI2 Silent p.K435K 0.16 TCGA-FZ-5922-01 10 6067953 6067953 C T IL2RA Missense_Mutation p.A34T 0.17 deleterious(0) probably_damaging(0.991) TCGA-FZ-5922-01 12 10145836 10145836 T C CLEC1B Missense_Mutation p.H199R 0.17 tolerated(0.2) benign(0.04) TCGA-FZ-5922-01 12 104682725 104682725 G A TXNRD1 Silent p.L107L 0.16 TCGA-FZ-5922-01 12 23728637 23728637 G C SOX5 Missense_Mutation p.P434A 0.04 deleterious(0.01) benign(0.073) TCGA-FZ-5922-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.13 deleterious(0) possibly_damaging(0.479) TCGA-FZ-5922-01 12 64536582 64536582 G A SRGAP1 3'UTR 0.18 TCGA-FZ-5922-01 13 28127529 28127529 G A LNX2 Missense_Mutation p.H532Y 0.17 tolerated(0.49) probably_damaging(0.999) TCGA-FZ-5922-01 13 36900551 36900551 G A SPG20 Intron 0.08 TCGA-FZ-5922-01 13 46952072 46952072 T C KIAA0226L 5'UTR 0.12 TCGA-FZ-5922-01 15 40662363 40662363 C G DISP2 Missense_Mutation p.D1350E 0.05 tolerated(0.43) possibly_damaging(0.822) TCGA-FZ-5922-01 16 21065824 21065824 G A DNAH3 Missense_Mutation p.A1319V 0.22 tolerated(0.05) benign(0.03) TCGA-FZ-5922-01 16 67237464 67237484 TCATTGCCCCCTCCAAGCGGG - ELMO3 Nonsense_Mutation p.F696_E703delins* 0.20 TCGA-FZ-5922-01 16 89789731 89789731 C T ZNF276 Missense_Mutation p.A207V 0.17 deleterious(0.01) possibly_damaging(0.651) TCGA-FZ-5922-01 19 22780172 22780172 C A RN7SL860P 5'Flank 0.21 TCGA-FZ-5922-01 1 167734835 167734835 C T MPZL1 Missense_Mutation p.S36L 0.18 tolerated(0.06) possibly_damaging(0.879) TCGA-FZ-5922-01 1 193219881 193219881 G A CDC73 3'UTR 0.19 TCGA-FZ-5922-01 1 245850589 245850589 T A KIF26B Missense_Mutation p.M1435K 0.21 tolerated(0.14) unknown(0) TCGA-FZ-5922-01 1 27106165 27106165 G - ARID1A Frame_Shift_Del p.G1926Efs*30 0.30 TCGA-FZ-5922-01 20 1161418 1161418 G A TMEM74B 3'UTR 0.05 TCGA-FZ-5922-01 21 45402220 45402220 G A AGPAT3 Missense_Mutation p.E360K 0.17 tolerated(0.22) benign(0.084) TCGA-FZ-5922-01 22 22049265 22049265 G T PPIL2 Nonsense_Mutation p.E458* 0.18 TCGA-FZ-5922-01 22 29727462 29727462 G C AP1B1 Missense_Mutation p.L834V 0.16 tolerated(0.25) benign(0.005) TCGA-FZ-5922-01 2 220371072 220371072 G T GMPPA Missense_Mutation p.D364Y 0.19 tolerated(0.57) probably_damaging(0.949) TCGA-FZ-5922-01 2 233351013 233351013 G A ECEL1 Silent p.D117D 0.15 TCGA-FZ-5922-01 2 74184338 74184338 C T DGUOK Silent p.H226H 0.17 TCGA-FZ-5922-01 2 86433365 86433366 - A MRPL35 Frame_Shift_Ins p.T61Nfs*4 0.21 TCGA-FZ-5922-01 3 133560230 133560230 C G RAB6B Missense_Mutation p.R63P 0.16 deleterious(0) probably_damaging(0.973) TCGA-FZ-5922-01 3 170783996 170783996 G - TNIK Frame_Shift_Del p.L1327Yfs*24 0.16 TCGA-FZ-5922-01 3 179472528 179472528 A G USP13 Missense_Mutation p.I603V 0.02 tolerated(0.75) benign(0.019) TCGA-FZ-5922-01 3 41277892 41277892 G A CTNNB1 Missense_Mutation p.C619Y 0.18 tolerated(0.05) possibly_damaging(0.555) TCGA-FZ-5922-01 3 52439312 52439312 T G BAP1 Splice_Site p.X311_splice 0.23 TCGA-FZ-5922-01 4 155176731 155176731 G A DCHS2 Missense_Mutation p.A1839V 0.19 deleterious(0.02) benign(0.117) TCGA-FZ-5922-01 4 39462521 39462521 C G LIAS Missense_Mutation p.L53V 0.17 tolerated(0.54) benign(0.004) TCGA-FZ-5922-01 4 54231749 54231749 C T SCFD2 Silent p.A120A 0.22 TCGA-FZ-5922-01 4 88534045 88534045 A T DSPP Missense_Mutation p.D236V 0.20 probably_damaging(0.988) TCGA-FZ-5922-01 5 140476009 140476009 C T PCDHB2 Silent p.S545S 0.10 TCGA-FZ-5922-01 5 150911268 150911268 C T FAT2 Missense_Mutation p.A3231T 0.16 benign(0.013) TCGA-FZ-5922-01 6 161529826 161529826 T C MAP3K4 Silent p.L1391L 0.23 TCGA-FZ-5922-01 6 17688753 17688753 T C NUP153 Missense_Mutation p.T70A 0.05 tolerated(0.47) benign(0.002) TCGA-FZ-5922-01 6 33180151 33180151 A G RING1 Missense_Mutation p.Y399C 0.21 deleterious(0) unknown(0) TCGA-FZ-5922-01 7 100320819 100320819 T C EPO 3'UTR 0.48 TCGA-FZ-5922-01 7 10979660 10979660 C T NDUFA4 Missense_Mutation p.A9T 0.08 tolerated(0.06) benign(0.105) TCGA-FZ-5922-01 7 123508827 123508827 C G HYAL4 Nonsense_Mutation p.S167* 0.18 TCGA-FZ-5922-01 7 126173847 126173847 T G GRM8 Missense_Mutation p.K530T 0.03 deleterious(0.03) possibly_damaging(0.761) TCGA-FZ-5922-01 7 128658021 128658021 A T TNPO3 Missense_Mutation p.I104N 0.18 deleterious(0) probably_damaging(0.998) TCGA-FZ-5922-01 7 142562188 142562188 C T EPHB6 Silent p.Y210Y 0.02 TCGA-FZ-5922-01 7 897577 897577 G A SUN1 Missense_Mutation p.D503N 0.17 deleterious(0.01) probably_damaging(0.977) TCGA-FZ-5922-01 9 101911535 101911535 G A TGFBR1 Missense_Mutation p.R487Q 0.24 deleterious(0) probably_damaging(0.98) TCGA-FZ-5922-01 X 118140187 118140187 G A LONRF3 Missense_Mutation p.G507S 0.35 tolerated(0.17) benign(0.037) TCGA-FZ-5923-01 10 129536923 129536923 G A FOXI2 Silent p.A217A 0.20 TCGA-FZ-5923-01 10 133958614 133958614 C T JAKMIP3 Missense_Mutation p.R536C 0.08 deleterious(0) probably_damaging(0.982) TCGA-FZ-5923-01 10 88702296 88702296 G A MMRN2 Missense_Mutation p.R749W 0.03 tolerated(0.08) possibly_damaging(0.462) TCGA-FZ-5923-01 11 108141784 108141791 ATCTTAGT - ATM Splice_Site p.X947_splice 0.18 TCGA-FZ-5923-01 11 124413511 124413511 C T OR8B12 Missense_Mutation p.E14K 0.12 tolerated_low_confidence(0.31) benign(0.001) TCGA-FZ-5923-01 11 7111150 7111150 G A RBMXL2 Missense_Mutation p.D267N 0.14 tolerated(0.08) benign(0.008) TCGA-FZ-5923-01 12 112622141 112622141 G A HECTD4 Silent p.T3397T 0.06 TCGA-FZ-5923-01 12 117768312 117768312 G A NOS1 Missense_Mutation p.A188V 0.04 tolerated_low_confidence(0.35) benign(0) TCGA-FZ-5923-01 12 132466743 132466743 T C EP400 Missense_Mutation p.L550S 0.07 unknown(0) TCGA-FZ-5923-01 12 1943539 1943539 C T LRTM2 Silent p.D255D 0.09 TCGA-FZ-5923-01 12 21680123 21680123 G A C12orf39 Missense_Mutation p.A48T 0.04 tolerated(0.29) probably_damaging(0.998) TCGA-FZ-5923-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.09 deleterious(0) benign(0.361) TCGA-FZ-5923-01 12 72070632 72070632 A T THAP2 Missense_Mutation p.E144V 0.11 deleterious(0) benign(0.261) TCGA-FZ-5923-01 13 28908198 28908198 G T FLT1 Missense_Mutation p.P853T 0.12 tolerated(0.62) probably_damaging(0.975) TCGA-FZ-5923-01 13 29598940 29598940 G A MTUS2 Silent p.T45T 0.04 TCGA-FZ-5923-01 15 48780430 48780430 C T FBN1 Missense_Mutation p.E1073K 0.09 probably_damaging(0.95) TCGA-FZ-5923-01 16 1035280 1035280 G A SOX8 Missense_Mutation p.R412H 0.14 deleterious(0) probably_damaging(0.998) TCGA-FZ-5923-01 16 72830460 72830460 G T ZFHX3 Missense_Mutation p.P2041T 0.07 benign(0.419) TCGA-FZ-5923-01 16 75512997 75512997 C T CHST6 Missense_Mutation p.E244K 0.13 tolerated(0.26) probably_damaging(0.981) TCGA-FZ-5923-01 17 71354323 71354323 C T SDK2 Missense_Mutation p.V1830M 0.09 tolerated(0.05) possibly_damaging(0.594) TCGA-FZ-5923-01 17 75205427 75205427 G A SEC14L1 Missense_Mutation p.E494K 0.03 tolerated(0.63) benign(0.318) TCGA-FZ-5923-01 17 76047044 76047044 C T TNRC6C Missense_Mutation p.T634M 0.03 deleterious(0.03) possibly_damaging(0.562) TCGA-FZ-5923-01 18 48591918 48591918 C T SMAD4 Missense_Mutation p.R361C 0.09 deleterious(0) probably_damaging(1) TCGA-FZ-5923-01 18 909573 909573 C T ADCYAP1 Silent p.A156A 0.06 TCGA-FZ-5923-01 19 11304177 11304177 C T KANK2 Silent p.A193A 0.04 TCGA-FZ-5923-01 19 12502559 12502559 G A ZNF799 Missense_Mutation p.T218M 0.12 deleterious(0.04) benign(0.229) TCGA-FZ-5923-01 19 14862377 14862377 G A EMR2 Missense_Mutation p.T632M 0.12 tolerated(0.25) benign(0.101) TCGA-FZ-5923-01 19 1487059 1487059 G A PCSK4 Silent p.R287R 0.08 TCGA-FZ-5923-01 19 33696374 33696374 G A LRP3 Missense_Mutation p.R233H 0.05 deleterious(0.04) benign(0.028) TCGA-FZ-5923-01 19 41089528 41089528 G A SHKBP1 Missense_Mutation p.R357H 0.08 deleterious(0) probably_damaging(0.999) TCGA-FZ-5923-01 1 115222920 115222920 C T AMPD1 Missense_Mutation p.D276N 0.03 deleterious(0.01) probably_damaging(0.999) TCGA-FZ-5923-01 1 12887547 12887547 G A PRAMEF11 Missense_Mutation p.R104W 0.14 tolerated(0.05) benign(0.066) TCGA-FZ-5923-01 1 151112146 151112146 C T SEMA6C Missense_Mutation p.E89K 0.03 tolerated(0.08) benign(0) TCGA-FZ-5923-01 1 158153994 158153994 C T CD1D 3'UTR 0.03 TCGA-FZ-5923-01 1 171174741 171174741 T A FMO2 Missense_Mutation p.L384H 0.05 deleterious(0) probably_damaging(1) TCGA-FZ-5923-01 1 228467882 228467882 C T OBSCN Missense_Mutation p.R2985W 0.08 probably_damaging(1) TCGA-FZ-5923-01 1 240374520 240374520 G A FMN2 Silent p.K1350K 0.03 TCGA-FZ-5923-01 20 24993297 24993297 C T ACSS1 Missense_Mutation p.D571N 0.03 tolerated(0.49) benign(0.009) TCGA-FZ-5923-01 20 35060245 35060245 G A DLGAP4 Missense_Mutation p.R42H 0.13 tolerated(0.63) benign(0.04) TCGA-FZ-5923-01 21 28337977 28337977 G A ADAMTS5 Missense_Mutation p.S245L 0.13 tolerated(0.38) benign(0) TCGA-FZ-5923-01 21 45753013 45753013 C T C21orf2 Silent p.L92L 0.10 TCGA-FZ-5923-01 21 47532319 47532319 G A COL6A2 Missense_Mutation p.R181H 0.05 deleterious(0) probably_damaging(0.998) TCGA-FZ-5923-01 22 31859948 31859948 G A EIF4ENIF1 Nonsense_Mutation p.R102* 0.04 TCGA-FZ-5923-01 2 127808793 127808794 - CCCG BIN1 Frame_Shift_Ins p.T468Wfs*18 0.11 TCGA-FZ-5923-01 2 175619033 175619033 C T CHRNA1 Missense_Mutation p.V177I 0.06 tolerated(0.17) probably_damaging(0.999) TCGA-FZ-5923-01 2 179569435 179569435 C T TTN Missense_Mutation p.D9922N 0.09 TCGA-FZ-5923-01 2 179604915 179604915 C T TTN Missense_Mutation p.V4349M 0.14 TCGA-FZ-5923-01 2 192701269 192701269 C T SDPR Missense_Mutation p.E220K 0.08 tolerated(0.09) benign(0.022) TCGA-FZ-5923-01 2 207452819 207452819 G A ADAM23 Missense_Mutation p.R598H 0.12 deleterious(0.05) probably_damaging(0.993) TCGA-FZ-5923-01 2 27276415 27276415 C T AGBL5 Missense_Mutation p.R121C 0.09 deleterious(0) probably_damaging(1) TCGA-FZ-5923-01 2 27656328 27656328 G A NRBP1 Missense_Mutation p.R63H 0.14 deleterious(0) probably_damaging(0.997) TCGA-FZ-5923-01 2 28635390 28635390 C T FOSL2 3'UTR 0.10 TCGA-FZ-5923-01 2 44051560 44051560 A G ABCG5 Missense_Mutation p.S306P 0.08 deleterious(0) probably_damaging(1) TCGA-FZ-5923-01 2 46611909 46611909 G A EPAS1 3'UTR 0.10 TCGA-FZ-5923-01 3 101177867 101177867 G A SENP7 Silent p.I72I 0.03 TCGA-FZ-5923-01 3 179519804 179519804 A C PEX5L Missense_Mutation p.F565V 0.14 deleterious(0) probably_damaging(1) TCGA-FZ-5923-01 3 194790812 194790812 T C XXYLT1 Missense_Mutation p.N272D 0.06 deleterious(0.01) probably_damaging(0.932) TCGA-FZ-5923-01 3 197562601 197562601 G T LRCH3 Nonsense_Mutation p.E387* 0.11 TCGA-FZ-5923-01 3 31725318 31725318 G A OSBPL10 Missense_Mutation p.H512Y 0.08 deleterious(0.03) benign(0.334) TCGA-FZ-5923-01 3 47125634 47125634 C T SETD2 Missense_Mutation p.R1879H 0.04 deleterious(0) possibly_damaging(0.863) TCGA-FZ-5923-01 3 64085557 64085557 G A PRICKLE2 Nonsense_Mutation p.R569* 0.09 TCGA-FZ-5923-01 3 95374591 95374591 G T MTHFD2P1 RNA 0.09 TCGA-FZ-5923-01 4 109670416 109670416 G A ETNPPL Missense_Mutation p.S302F 0.07 deleterious(0.01) possibly_damaging(0.786) TCGA-FZ-5923-01 4 57333839 57333839 C G SRP72 Missense_Mutation p.A13G 0.11 tolerated(0.25) benign(0.015) TCGA-FZ-5923-01 4 77065403 77065403 G C NUP54 Missense_Mutation p.T65S 0.12 tolerated(0.48) unknown(0) TCGA-FZ-5923-01 4 99325653 99325653 T C RAP1GDS1 Silent p.S222S 0.10 TCGA-FZ-5923-01 5 168244314 168244314 C T SLIT3 Missense_Mutation p.V262M 0.07 tolerated(0.1) probably_damaging(0.979) TCGA-FZ-5923-01 5 45267329 45267329 G A HCN1 Missense_Mutation p.R549C 0.02 deleterious(0) probably_damaging(1) TCGA-FZ-5923-01 5 7835544 7835544 C T C5orf49 Missense_Mutation p.R72Q 0.13 deleterious(0) probably_damaging(1) TCGA-FZ-5923-01 5 79617205 79617205 G T SPZ1 Missense_Mutation p.D391Y 0.08 deleterious(0.01) possibly_damaging(0.507) TCGA-FZ-5923-01 6 151936716 151936716 G A CCDC170 Missense_Mutation p.E617K 0.07 deleterious(0.01) probably_damaging(0.925) TCGA-FZ-5923-01 6 29080438 29080438 G A OR2J3 Silent p.P257P 0.11 TCGA-FZ-5923-01 6 39053874 39053874 G T GLP1R 3'UTR 0.13 TCGA-FZ-5923-01 7 147914427 147914427 C T CNTNAP2 Nonsense_Mutation p.Q1020* 0.02 TCGA-FZ-5923-01 7 77379157 77379157 C T RSBN1L Missense_Mutation p.P374S 0.11 deleterious(0.05) possibly_damaging(0.734) TCGA-FZ-5923-01 7 98254349 98254349 C A NPTX2 Nonsense_Mutation p.C253* 0.03 TCGA-FZ-5923-01 8 142229763 142229763 T C SLC45A4 Missense_Mutation p.H148R 0.21 deleterious(0.04) benign(0.428) TCGA-FZ-5923-01 8 21900685 21900685 A G FGF17 Missense_Mutation p.Q22R 0.04 tolerated(0.14) unknown(0) TCGA-FZ-5923-01 8 24813396 24813396 G A CTD-2168K21.2 5'Flank 0.07 TCGA-FZ-5923-01 8 26627800 26627800 G A ADRA1A Missense_Mutation p.R423W 0.06 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-FZ-5923-01 8 38133932 38133932 C T WHSC1L1 Silent p.Q1318Q 0.09 TCGA-FZ-5923-01 9 108151353 108151353 A G SLC44A1 3'UTR 0.09 TCGA-FZ-5923-01 9 115818910 115818912 CTC - ZFP37 In_Frame_Del p.R20del 0.18 TCGA-FZ-5923-01 9 131185102 131185102 A G CERCAM Intron 0.14 TCGA-FZ-5923-01 9 136529088 136529088 C G SARDH Missense_Mutation p.G894R 0.04 deleterious(0.04) probably_damaging(0.988) TCGA-FZ-5923-01 9 138516228 138516228 G A GLT6D1 Silent p.F182F 0.08 TCGA-FZ-5923-01 9 139324045 139324045 G A INPP5E 3'UTR 0.05 TCGA-FZ-5923-01 9 27950456 27950456 C T LINGO2 Missense_Mutation p.V72I 0.15 tolerated(0.51) benign(0.003) TCGA-FZ-5923-01 X 18189251 18189251 G A BEND2 Silent p.C685C 0.10 TCGA-FZ-5923-01 X 64738237 64738237 G A LAS1L Silent p.G519G 0.07 TCGA-FZ-5924-01 10 12142180 12142180 A G DHTKD1 Missense_Mutation p.R559G 0.24 deleterious(0) probably_damaging(1) TCGA-FZ-5924-01 10 131639152 131639152 G A EBF3 Missense_Mutation p.S497L 0.23 deleterious_low_confidence(0.01) benign(0.131) TCGA-FZ-5924-01 10 20534299 20534299 G C PLXDC2 Missense_Mutation p.E446D 0.20 tolerated(0.33) benign(0.004) TCGA-FZ-5924-01 10 27324226 27324226 A G ANKRD26 Silent p.D1051D 0.27 TCGA-FZ-5924-01 10 27702139 27702139 G A PTCHD3 Silent p.L347L 0.24 TCGA-FZ-5924-01 10 96005755 96005755 A G PLCE1 Missense_Mutation p.K825E 0.27 deleterious(0.01) benign(0.118) TCGA-FZ-5924-01 11 108380143 108380143 A T EXPH5 3'UTR 0.12 TCGA-FZ-5924-01 11 134254062 134254062 G A B3GAT1 Missense_Mutation p.R45C 0.26 deleterious_low_confidence(0.01) benign(0.416) TCGA-FZ-5924-01 11 64323727 64323727 C T SLC22A11 Missense_Mutation p.R86C 0.27 deleterious(0.01) probably_damaging(0.97) TCGA-FZ-5924-01 11 66637839 66637839 G A PC Silent p.P279P 0.15 TCGA-FZ-5924-01 11 69063185 69063185 G A MYEOV Missense_Mutation p.V90M 0.12 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-FZ-5924-01 12 130647817 130647817 C T FZD10 Silent p.C110C 0.05 TCGA-FZ-5924-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.12 deleterious(0.03) benign(0.376) TCGA-FZ-5924-01 12 2702421 2702421 G A CACNA1C Missense_Mutation p.R858H 0.17 deleterious(0.02) possibly_damaging(0.648) TCGA-FZ-5924-01 12 45803201 45803201 C T ANO6 Nonsense_Mutation p.R669* 0.33 TCGA-FZ-5924-01 14 105707720 105707720 G T BRF1 Missense_Mutation p.H192Q 0.20 tolerated(0.23) benign(0.145) TCGA-FZ-5924-01 14 65266502 65266502 C T SPTB Missense_Mutation p.A343T 0.26 tolerated(0.06) benign(0.177) TCGA-FZ-5924-01 15 49255053 49255053 C T SHC4 Missense_Mutation p.G54S 0.26 tolerated(0.81) benign(0.098) TCGA-FZ-5924-01 15 80800573 80800573 G A ARNT2 Silent p.S233S 0.20 TCGA-FZ-5924-01 15 96880982 96880982 G A NR2F2 3'UTR 0.16 TCGA-FZ-5924-01 16 2086466 2086466 G A SLC9A3R2 Missense_Mutation p.A186T 0.21 deleterious(0.04) benign(0.311) TCGA-FZ-5924-01 16 46956249 46956249 C A GPT2 Missense_Mutation p.P378Q 0.24 deleterious(0.01) probably_damaging(0.972) TCGA-FZ-5924-01 17 39122914 39122914 A G KRT39 Silent p.F65F 0.22 TCGA-FZ-5924-01 17 48625031 48625031 C - SPATA20 Intron 0.30 TCGA-FZ-5924-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.30 deleterious(0) probably_damaging(1) TCGA-FZ-5924-01 19 47935504 47935507 GCGA - SLC8A2 Frame_Shift_Del p.L769Pfs*49 0.33 TCGA-FZ-5924-01 19 49658442 49658442 G T HRC Missense_Mutation p.A18D 0.25 deleterious(0) probably_damaging(0.981) TCGA-FZ-5924-01 1 207643052 207643052 C T CR2 Missense_Mutation p.P277L 0.16 deleterious(0.03) benign(0.132) TCGA-FZ-5924-01 1 212459533 212459533 A G PPP2R5A Silent p.K27K 0.36 TCGA-FZ-5924-01 20 10273541 10273541 C T SNAP25 Intron 0.21 TCGA-FZ-5924-01 21 30428764 30428764 A T CCT8 3'UTR 0.32 TCGA-FZ-5924-01 21 47422162 47422162 C T COL6A1 Silent p.G699G 0.25 TCGA-FZ-5924-01 2 1668825 1668825 G A PXDN Missense_Mutation p.T438M 0.23 tolerated(0.1) benign(0.064) TCGA-FZ-5924-01 2 168099977 168099977 T C XIRP2 Missense_Mutation p.V692A 0.21 probably_damaging(0.985) TCGA-FZ-5924-01 2 178098962 178098962 A G NFE2L2 Missense_Mutation p.I28T 0.22 deleterious(0) probably_damaging(0.98) TCGA-FZ-5924-01 2 207172204 207172204 G A ZDBF2 Silent p.K984K 0.23 TCGA-FZ-5924-01 2 207572064 207572064 C T DYTN Silent p.P86P 0.16 TCGA-FZ-5924-01 2 29295775 29295775 C T C2orf71 Silent p.G451G 0.24 TCGA-FZ-5924-01 2 88082705 88082705 A G RGPD2 Missense_Mutation p.S1280P 0.21 deleterious(0) possibly_damaging(0.504) TCGA-FZ-5924-01 3 130095344 130095344 G C COL6A5 Missense_Mutation p.G111A 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-FZ-5924-01 3 42728164 42728164 G A KLHL40 Missense_Mutation p.V352I 0.27 tolerated(0.18) benign(0.034) TCGA-FZ-5924-01 5 1268676 1268676 G A TERT Silent p.G847G 0.20 TCGA-FZ-5924-01 5 138941312 138941313 - CCCTTCCCCGT UBE2D2 5'UTR 0.14 TCGA-FZ-5924-01 5 178194331 178194331 C T AACSP1 RNA 0.23 TCGA-FZ-5924-01 5 55206448 55206448 C A IL31RA Silent p.T530T 0.18 TCGA-FZ-5924-01 7 21985535 21985535 C G CDCA7L 5'UTR 0.29 TCGA-FZ-5924-01 7 36373702 36373703 - T KIAA0895 Frame_Shift_Ins p.H357Tfs*2 0.30 TCGA-FZ-5924-01 8 120843973 120843973 T C TAF2 Splice_Site p.X28_splice 0.28 TCGA-FZ-5924-01 8 89086968 89086968 G A MMP16 Nonsense_Mutation p.Q363* 0.23 TCGA-FZ-5924-01 9 127549437 127549437 G A OLFML2A Missense_Mutation p.A92T 0.32 deleterious(0) probably_damaging(0.99) TCGA-FZ-5924-01 X 48761886 48761886 G A SLC35A2 Intron 0.56 TCGA-FZ-5924-01 X 70472554 70472555 - A ZMYM3 Frame_Shift_Ins p.Q185Tfs*8 0.38 TCGA-FZ-5926-01 10 30658075 30658075 C T AL161651.1 5'Flank 0.04 TCGA-FZ-5926-01 11 122805736 122805736 C T C11orf63 Silent p.L529L 0.09 TCGA-FZ-5926-01 11 26619970 26619970 C A ANO3 Missense_Mutation p.D502E 0.05 deleterious(0) probably_damaging(0.999) TCGA-FZ-5926-01 11 7981305 7981305 A T NLRP10 Nonsense_Mutation p.C618* 0.04 TCGA-FZ-5926-01 11 8724252 8724252 G A ST5 Missense_Mutation p.R863W 0.04 deleterious(0) probably_damaging(0.999) TCGA-FZ-5926-01 11 92616466 92616466 G A FAT3 Missense_Mutation p.V4282M 0.05 possibly_damaging(0.849) TCGA-FZ-5926-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.09 deleterious(0) benign(0.361) TCGA-FZ-5926-01 12 41831612 41831612 G A PDZRN4 Intron 0.03 TCGA-FZ-5926-01 12 57861870 57861870 G A GLI1 Missense_Mutation p.A391T 0.06 deleterious(0) probably_damaging(0.996) TCGA-FZ-5926-01 12 66731897 66731897 G T HELB 3'UTR 0.03 TCGA-FZ-5926-01 14 100182237 100182237 C T CYP46A1 Missense_Mutation p.R262W 0.03 deleterious(0.01) probably_damaging(0.948) TCGA-FZ-5926-01 14 21792810 21792810 C T RPGRIP1 Missense_Mutation p.P599L 0.03 deleterious(0.03) benign(0.036) TCGA-FZ-5926-01 14 91700906 91700906 G A GPR68 Silent p.I163I 0.06 TCGA-FZ-5926-01 15 83226611 83226611 G A CPEB1 Missense_Mutation p.R169C 0.03 deleterious_low_confidence(0) probably_damaging(0.949) TCGA-FZ-5926-01 16 2817974 2817974 C T SRRM2 Missense_Mutation p.T2482M 0.03 probably_damaging(0.943) TCGA-FZ-5926-01 16 3299561 3299561 C T MEFV Missense_Mutation p.R377H 0.08 tolerated(0.06) benign(0.409) TCGA-FZ-5926-01 17 18154700 18154700 G A FLII Missense_Mutation p.T492M 0.09 tolerated(0.2) benign(0.028) TCGA-FZ-5926-01 17 33977630 33977630 G A AP2B1 Missense_Mutation p.V540I 0.07 tolerated(0.29) benign(0.031) TCGA-FZ-5926-01 17 39673185 39673185 C T KRT15 Missense_Mutation p.V205I 0.05 deleterious(0.01) possibly_damaging(0.655) TCGA-FZ-5926-01 17 68172063 68172063 G A KCNJ2 Missense_Mutation p.V295M 0.04 deleterious(0) probably_damaging(1) TCGA-FZ-5926-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.10 tolerated(0.13) possibly_damaging(0.631) TCGA-FZ-5926-01 17 78321227 78321227 G A RNF213 Missense_Mutation p.G3031D 0.07 possibly_damaging(0.793) TCGA-FZ-5926-01 17 7942847 7942847 G A ALOX15B Silent p.P97P 0.12 TCGA-FZ-5926-01 18 7774244 7774244 G A PTPRM Silent p.P57P 0.03 TCGA-FZ-5926-01 19 55106342 55106342 C T LILRA1 Missense_Mutation p.R95W 0.04 deleterious(0.02) benign(0.264) TCGA-FZ-5926-01 19 8206691 8206691 G A FBN3 Nonsense_Mutation p.Q259* 0.07 TCGA-FZ-5926-01 1 118535130 118535130 T G SPAG17 Missense_Mutation p.I1774L 0.02 tolerated(0.42) benign(0.034) TCGA-FZ-5926-01 1 192321195 192321195 G A RGS21 Missense_Mutation p.R36Q 0.10 tolerated(0.13) possibly_damaging(0.634) TCGA-FZ-5926-01 1 19455510 19455510 G A UBR4 Nonsense_Mutation p.R2989* 0.05 TCGA-FZ-5926-01 1 2530110 2530110 G A MMEL1 Silent p.I387I 0.07 TCGA-FZ-5926-01 1 34209014 34209014 G A CSMD2 Silent p.A640A 0.07 TCGA-FZ-5926-01 1 91851171 91851171 G T HFM1 Missense_Mutation p.P239T 0.03 deleterious(0.02) benign(0.282) TCGA-FZ-5926-01 20 30064350 30064350 C T REM1 Silent p.S34S 0.10 TCGA-FZ-5926-01 20 33324554 33324554 G A NCOA6 Nonsense_Mutation p.Q1968* 0.10 TCGA-FZ-5926-01 20 33324555 33324555 C A NCOA6 Silent p.S1967S 0.10 TCGA-FZ-5926-01 20 42198157 42198157 G T SGK2 Splice_Site p.X180_splice 0.07 TCGA-FZ-5926-01 20 44641961 44641961 G A MMP9 Silent p.T466T 0.09 TCGA-FZ-5926-01 20 45607198 45607198 G AA EYA2 Intron 0.09 TCGA-FZ-5926-01 2 177015088 177015088 G A HOXD3 5'Flank 0.08 TCGA-FZ-5926-01 2 179319081 179319081 G C DFNB59 Silent p.L78L 0.05 TCGA-FZ-5926-01 2 179569272 179569272 C T TTN Missense_Mutation p.G9976D 0.04 TCGA-FZ-5926-01 2 188343525 188343525 T C TFPI Intron 0.09 TCGA-FZ-5926-01 3 124103747 124103747 C T KALRN Missense_Mutation p.T607M 0.03 deleterious(0) unknown(0) TCGA-FZ-5926-01 3 41504591 41504591 C A ULK4 Missense_Mutation p.R1127L 0.08 deleterious(0) probably_damaging(0.995) TCGA-FZ-5926-01 3 56662562 56662562 C T FAM208A Silent p.L1276L 0.08 TCGA-FZ-5926-01 4 66197831 66197831 C A EPHA5 Missense_Mutation p.L956F 0.04 tolerated(0.09) benign(0.108) TCGA-FZ-5926-01 5 92923762 92923762 G A NR2F1 Silent p.S201S 0.04 TCGA-FZ-5926-01 6 163987788 163987788 C T QKI Missense_Mutation p.R324C 0.05 tolerated(0.08) probably_damaging(0.997) TCGA-FZ-5926-01 6 30104878 30104878 A G TRIM40 Missense_Mutation p.K22R 0.03 tolerated(0.14) possibly_damaging(0.67) TCGA-FZ-5926-01 7 129909574 129909574 C T CPA2 Silent p.N73N 0.05 TCGA-FZ-5926-01 7 2946234 2946234 C G CARD11 3'UTR 0.07 TCGA-FZ-5926-01 9 137593108 137593108 G A COL5A1 Missense_Mutation p.D195N 0.06 benign(0.183) TCGA-FZ-5926-01 9 20789554 20789554 C T FOCAD Missense_Mutation p.L468F 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-FZ-5926-01 X 44936003 44936003 A T KDM6A Nonsense_Mutation p.R922* 0.04 TCGA-FZ-5926-01 X 47058941 47058941 T C UBA1 Silent p.A136A 0.03 TCGA-FZ-5926-01 X 70519912 70519912 C T NONO Missense_Mutation p.R468C 0.06 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-H6-8124-01 10 111876161 111876161 A G ADD3 Missense_Mutation p.Y160C 0.56 tolerated(0.14) probably_damaging(1) TCGA-H6-8124-01 10 25138811 25138811 C A PRTFDC1 Missense_Mutation p.V214F 0.47 deleterious(0) probably_damaging(0.98) TCGA-H6-8124-01 11 64564293 64564293 G A MAP4K2 Missense_Mutation p.P494S 0.32 deleterious(0.02) probably_damaging(0.994) TCGA-H6-8124-01 11 73076866 73076866 C T ARHGEF17 Missense_Mutation p.R1957W 0.31 deleterious(0.03) probably_damaging(0.968) TCGA-H6-8124-01 11 95724867 95724867 G A MAML2 Silent p.G720G 0.35 TCGA-H6-8124-01 12 15095522 15095522 G A ARHGDIB Silent p.D180D 0.72 TCGA-H6-8124-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.69 deleterious(0) possibly_damaging(0.479) TCGA-H6-8124-01 12 57573330 57573330 G A LRP1 Missense_Mutation p.V1653I 0.23 probably_damaging(0.997) TCGA-H6-8124-01 12 89743153 89743153 C A DUSP6 Missense_Mutation p.D342Y 0.54 deleterious(0) probably_damaging(0.971) TCGA-H6-8124-01 13 33110585 33110585 T C N4BP2L2 Intron 0.36 TCGA-H6-8124-01 13 36744857 36744857 C T SOHLH2 Silent p.A433A 0.38 TCGA-H6-8124-01 15 31202898 31202928 TGGTGAATCCCAATGGACAGAAACAGCAGCT G FAN1 In_Frame_Del p.L486_L496delinsW 0.17 TCGA-H6-8124-01 17 7577568 7577568 C T TP53 Missense_Mutation p.C238Y 0.57 deleterious(0) probably_damaging(1) TCGA-H6-8124-01 19 17213029 17213029 C A MYO9B Missense_Mutation p.H168N 0.50 tolerated(1) benign(0.008) TCGA-H6-8124-01 19 37644488 37644488 T C ZNF585A Missense_Mutation p.N50D 0.51 tolerated(0.18) benign(0.034) TCGA-H6-8124-01 19 40363276 40363276 C T FCGBP Missense_Mutation p.E4932K 0.52 possibly_damaging(0.545) TCGA-H6-8124-01 19 58153483 58153484 - A ZNF211 Frame_Shift_Ins p.S610Ifs*33 0.38 TCGA-H6-8124-01 1 111494596 111494596 G A LRIF1 Missense_Mutation p.L304F 0.33 deleterious(0) probably_damaging(0.934) TCGA-H6-8124-01 1 160063798 160063798 A C IGSF8 Missense_Mutation p.F202L 0.31 deleterious(0) probably_damaging(0.977) TCGA-H6-8124-01 1 205312365 205312365 G A KLHDC8A Missense_Mutation p.T123M 0.34 deleterious(0.02) benign(0.047) TCGA-H6-8124-01 1 2444410 2444410 C T PANK4 Silent p.L548L 0.34 TCGA-H6-8124-01 1 4772528 4772528 G A AJAP1 Missense_Mutation p.V200I 0.39 tolerated(0.92) benign(0) TCGA-H6-8124-01 1 68952619 68952619 C A DEPDC1 Splice_Site p.X257_splice 0.30 TCGA-H6-8124-01 20 30584387 30584387 C T XKR7 Silent p.D289D 0.28 TCGA-H6-8124-01 2 1670184 1670184 C T PXDN Missense_Mutation p.A365T 0.14 deleterious(0.01) benign(0.323) TCGA-H6-8124-01 2 179318123 179318123 G A DFNB59 5'UTR 0.17 TCGA-H6-8124-01 2 219500518 219500518 G C PLCD4 Splice_Site p.X633_splice 0.46 TCGA-H6-8124-01 2 234627639 234627639 C T UGT1A4 Missense_Mutation p.A58V 0.40 tolerated(1) benign(0.012) TCGA-H6-8124-01 2 99858781 99858781 G A LYG2 3'UTR 0.40 TCGA-H6-8124-01 3 133327737 133327737 G A TOPBP1 Missense_Mutation p.L1415F 0.31 deleterious(0) probably_damaging(0.999) TCGA-H6-8124-01 3 152880927 152880962 AACAAAGCCTCGGTAGACGAGCTATTTGCCGAGATC - RAP2B In_Frame_Del p.N149_I160del 0.36 TCGA-H6-8124-01 3 48699138 48699138 C T CELSR3 Silent p.A310A 0.16 TCGA-H6-8124-01 4 2306490 2306490 G A ZFYVE28 Missense_Mutation p.S526F 0.29 tolerated_low_confidence(0.06) possibly_damaging(0.463) TCGA-H6-8124-01 4 3516576 3516582 AGCTTCT - LRPAP1 Frame_Shift_Del p.E303Gfs*13 0.39 TCGA-H6-8124-01 4 94006305 94006305 G A GRID2 Missense_Mutation p.R135Q 0.33 tolerated(0.22) benign(0.278) TCGA-H6-8124-01 5 158750144 158750144 G A IL12B Silent p.G94G 0.35 TCGA-H6-8124-01 6 170597430 170597430 G A DLL1 Silent p.S189S 0.46 TCGA-H6-8124-01 7 101870648 101870648 A C CUX1 Missense_Mutation p.E1055D 0.33 tolerated(0.09) unknown(0) TCGA-H6-8124-01 7 45614538 45614540 CTT - ADCY1 In_Frame_Del p.F133del 0.43 TCGA-H6-8124-01 7 53103972 53103972 G A POM121L12 Missense_Mutation p.S203N 0.35 tolerated(0.26) possibly_damaging(0.682) TCGA-H6-8124-01 7 79764466 79764466 C G GNAI1 5'UTR 0.32 TCGA-H6-8124-01 7 87563718 87563718 G A ADAM22 5'UTR 0.21 TCGA-H6-8124-01 7 87564445 87564445 G A ADAM22 Missense_Mutation p.E64K 0.22 deleterious(0.01) probably_damaging(0.939) TCGA-H6-8124-01 8 21986391 21986391 C T HR Missense_Mutation p.R98H 0.10 tolerated_low_confidence(0.09) benign(0.014) TCGA-H6-8124-01 9 21974782 21974782 C T CDKN2A Nonsense_Mutation p.W15* 0.63 TCGA-H6-8124-01 9 21974786 21974786 T C CDKN2A Missense_Mutation p.D14G 0.63 deleterious(0.01) benign(0.055) TCGA-H6-8124-01 X 153587767 153587767 C A FLNA Missense_Mutation p.G1384C 0.34 deleterious(0) probably_damaging(1) TCGA-H6-8124-01 X 47426043 47426043 G A ARAF Missense_Mutation p.R188H 0.41 tolerated(0.42) benign(0) TCGA-H6-8124-01 X 49854844 49854844 G A CLCN5 Missense_Mutation p.V606M 0.36 deleterious(0) probably_damaging(0.999) TCGA-H6-A45N-01 10 82036258 82036258 C T MAT1A Silent p.T214T 0.04 TCGA-H6-A45N-01 11 101362330 101362330 T A TRPC6 Missense_Mutation p.N362I 0.04 deleterious(0.01) benign(0.355) TCGA-H6-A45N-01 11 102668153 102668153 C T MMP1 Missense_Mutation p.E62K 0.05 tolerated(0.43) possibly_damaging(0.905) TCGA-H6-A45N-01 11 126174162 126174162 T A DCPS Missense_Mutation p.F63I 0.05 tolerated(0.08) benign(0.429) TCGA-H6-A45N-01 11 27015967 27015967 G C FIBIN 5'UTR 0.06 TCGA-H6-A45N-01 16 70814758 70814758 G A VAC14 Missense_Mutation p.P344L 0.08 tolerated(0.16) benign(0.001) TCGA-H6-A45N-01 17 7577094 7577094 G C TP53 Missense_Mutation p.R282G 0.23 deleterious(0.03) benign(0.278) TCGA-H6-A45N-01 18 10677782 10677782 C A PIEZO2 Missense_Mutation p.M2568I 0.05 deleterious(0.01) benign(0.05) TCGA-H6-A45N-01 19 14208284 14208284 C T PRKACA Silent p.K218K 0.06 TCGA-H6-A45N-01 19 44612263 44612263 G C ZNF224 Missense_Mutation p.K650N 0.03 tolerated(0.05) benign(0.001) TCGA-H6-A45N-01 19 55607482 55607482 G A PPP1R12C Missense_Mutation p.R364W 0.10 deleterious(0) probably_damaging(0.996) TCGA-H6-A45N-01 19 59028970 59028970 T C ZBTB45 Missense_Mutation p.N24S 0.09 deleterious(0.01) probably_damaging(0.992) TCGA-H6-A45N-01 1 150444672 150444672 C G RPRD2 Missense_Mutation p.A1083G 0.08 deleterious_low_confidence(0) possibly_damaging(0.872) TCGA-H6-A45N-01 1 157805907 157805907 G A CD5L Missense_Mutation p.R32C 0.04 deleterious(0) probably_damaging(0.984) TCGA-H6-A45N-01 1 49208355 49208355 C T BEND5 Silent p.T278T 0.03 TCGA-H6-A45N-01 1 52940826 52940826 G A ZCCHC11 Missense_Mutation p.T802I 0.04 tolerated(0.21) benign(0.004) TCGA-H6-A45N-01 22 40061961 40061961 G A CACNA1I Missense_Mutation p.A1352T 0.05 deleterious(0) possibly_damaging(0.798) TCGA-H6-A45N-01 2 128712656 128712656 C - SAP130 Frame_Shift_Del p.V802Wfs*18 0.08 TCGA-H6-A45N-01 2 163302689 163302689 C T KCNH7 Missense_Mutation p.D465N 0.04 deleterious(0) probably_damaging(0.999) TCGA-H6-A45N-01 2 211179819 211179819 C A MYL1 5'UTR 0.04 TCGA-H6-A45N-01 6 10755436 10755436 C T TMEM14B Silent p.F88F 0.06 TCGA-H6-A45N-01 6 6002623 6002623 C G NRN1 Missense_Mutation p.G55R 0.08 tolerated(0.07) benign(0.215) TCGA-H6-A45N-01 6 90660239 90660239 G A BACH2 Missense_Mutation p.A529V 0.05 deleterious(0.04) probably_damaging(0.988) TCGA-H6-A45N-01 7 141759383 141759383 C T MGAM Missense_Mutation p.R1311W 0.05 deleterious(0) probably_damaging(0.999) TCGA-H6-A45N-01 7 16655415 16655415 C A ANKMY2 Missense_Mutation p.G162V 0.09 tolerated(0.08) benign(0.236) TCGA-H6-A45N-01 7 30662035 30662035 G A GARS Missense_Mutation p.E524K 0.04 tolerated(0.13) benign(0.114) TCGA-H6-A45N-01 9 35236562 35236562 G C UNC13B Missense_Mutation p.K83N 0.04 tolerated_low_confidence(0.14) benign(0) TCGA-H6-A45N-01 X 135429571 135429571 A G GPR112 Missense_Mutation p.T1236A 0.04 tolerated(0.05) benign(0.052) TCGA-H8-A6C1-01 10 55944926 55944926 C T PCDH15 Missense_Mutation p.D470N 0.18 tolerated(0.12) probably_damaging(1) TCGA-H8-A6C1-01 10 7618670 7618670 C T ITIH5 Missense_Mutation p.R575H 0.19 deleterious(0) possibly_damaging(0.636) TCGA-H8-A6C1-01 11 55063026 55063026 T G TRIM51HP RNA 0.10 TCGA-H8-A6C1-01 11 78180334 78180334 T G NARS2 Missense_Mutation p.I329L 0.17 tolerated(0.41) benign(0.173) TCGA-H8-A6C1-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.13 deleterious(0) possibly_damaging(0.479) TCGA-H8-A6C1-01 12 6650735 6650735 C T IFFO1 Missense_Mutation p.R510H 0.15 deleterious(0) probably_damaging(0.999) TCGA-H8-A6C1-01 15 84694186 84694186 C T ADAMTSL3 Missense_Mutation p.R1552W 0.24 deleterious(0.01) benign(0.001) TCGA-H8-A6C1-01 16 1259139 1259139 C T CACNA1H Silent p.R1157R 0.12 TCGA-H8-A6C1-01 16 7568354 7568354 C T RBFOX1 Missense_Mutation p.A98V 0.21 deleterious(0.03) benign(0.247) TCGA-H8-A6C1-01 17 7579716 7579716 G - TP53 Frame_Shift_Del p.P27Lfs*17 0.24 TCGA-H8-A6C1-01 17 78348328 78348328 G A RNF213 Missense_Mutation p.R4338H 0.20 probably_damaging(0.999) TCGA-H8-A6C1-01 19 12760241 12760241 G A MAN2B1 Missense_Mutation p.R757W 0.16 deleterious(0.01) benign(0.379) TCGA-H8-A6C1-01 19 36253204 36253204 G T C19orf55 Missense_Mutation p.V164F 0.16 deleterious(0.04) benign(0.318) TCGA-H8-A6C1-01 19 58187505 58187505 T A ZSCAN4 5'UTR 0.33 TCGA-H8-A6C1-01 1 153916630 153916630 C A DENND4B Missense_Mutation p.G74V 0.04 deleterious(0) probably_damaging(0.999) TCGA-H8-A6C1-01 1 161696656 161696656 C A FCRLB Missense_Mutation p.F246L 0.16 tolerated(0.67) benign(0.268) TCGA-H8-A6C1-01 1 57224419 57224419 A C C1orf168 Silent p.T356T 0.22 TCGA-H8-A6C1-01 1 79387436 79387436 C T ELTD1 Nonsense_Mutation p.W373* 0.15 TCGA-H8-A6C1-01 1 82408793 82408793 A G LPHN2 Missense_Mutation p.T180A 0.21 deleterious(0) possibly_damaging(0.891) TCGA-H8-A6C1-01 21 37741700 37741700 A T MORC3 Silent p.I678I 0.17 TCGA-H8-A6C1-01 22 25280108 25280108 C T SGSM1 Silent p.C583C 0.15 TCGA-H8-A6C1-01 2 206610562 206610562 G A NRP2 Nonsense_Mutation p.W578* 0.23 TCGA-H8-A6C1-01 3 194062235 194062235 G A CPN2 Silent p.C399C 0.22 TCGA-H8-A6C1-01 3 50329757 50329757 C T IFRD2 Silent p.E47E 0.18 TCGA-H8-A6C1-01 5 140228551 140228551 G A PCDHA9 Silent p.A157A 0.15 TCGA-H8-A6C1-01 6 129802516 129802516 G A LAMA2 Missense_Mutation p.G2561S 0.20 deleterious(0) probably_damaging(1) TCGA-H8-A6C1-01 8 104709490 104709490 G A RIMS2 Missense_Mutation p.R118H 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-H8-A6C1-01 8 27690580 27690581 - T PBK Frame_Shift_Ins p.K18Efs*50 0.21 TCGA-H8-A6C1-01 8 41794801 41794801 C T KAT6A Missense_Mutation p.E1109K 0.18 benign(0.158) TCGA-H8-A6C1-01 8 72754901 72754901 C T MSC Missense_Mutation p.A206T 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-H8-A6C1-01 9 106878520 106878520 C T SMC2 Missense_Mutation p.R571C 0.19 deleterious(0.02) benign(0.348) TCGA-HV-A5A3-01 10 116444085 116444085 G A ABLIM1 Missense_Mutation p.L10F 0.29 tolerated_low_confidence(0.16) benign(0) TCGA-HV-A5A3-01 10 17363216 17363216 C T ST8SIA6 Silent p.T286T 0.13 TCGA-HV-A5A3-01 10 55826528 55826528 C A PCDH15 Missense_Mutation p.G737C 0.25 deleterious(0.01) benign(0.33) TCGA-HV-A5A3-01 11 1077612 1077612 A T MUC2 Missense_Mutation p.H121L 0.26 possibly_damaging(0.831) TCGA-HV-A5A3-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.50 deleterious(0) benign(0.361) TCGA-HV-A5A3-01 13 43934128 43934128 G A ENOX1 Missense_Mutation p.P150S 0.30 deleterious(0) probably_damaging(0.979) TCGA-HV-A5A3-01 14 75590766 75590766 T G NEK9 Missense_Mutation p.E127A 0.27 tolerated(0.35) probably_damaging(0.997) TCGA-HV-A5A3-01 14 86087923 86087923 T A FLRT2 Missense_Mutation p.I22N 0.26 deleterious(0) possibly_damaging(0.594) TCGA-HV-A5A3-01 14 94464479 94464479 T A LINC00521 RNA 0.26 TCGA-HV-A5A3-01 15 26825521 26825521 C T GABRB3 Silent p.P209P 0.05 TCGA-HV-A5A3-01 15 74636261 74636261 A G CYP11A1 Missense_Mutation p.F233S 0.42 deleterious(0) probably_damaging(0.999) TCGA-HV-A5A3-01 16 30793072 30793072 G A ZNF629 Silent p.L859L 0.32 TCGA-HV-A5A3-01 16 61851519 61851519 C T CDH8 Missense_Mutation p.V381M 0.26 tolerated(0.15) possibly_damaging(0.735) TCGA-HV-A5A3-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.34 deleterious(0) probably_damaging(1) TCGA-HV-A5A3-01 18 48603028 48603028 T A SMAD4 Nonsense_Mutation p.C443* 0.38 TCGA-HV-A5A3-01 18 5398076 5398076 G A EPB41L3 Nonsense_Mutation p.R806* 0.30 TCGA-HV-A5A3-01 19 22362994 22362994 C A ZNF676 Nonsense_Mutation p.E509* 0.23 TCGA-HV-A5A3-01 19 39760163 39760163 G A IFNL2 Silent p.L102L 0.46 TCGA-HV-A5A3-01 19 51189519 51189519 C T SHANK1 Missense_Mutation p.R851Q 0.47 benign(0.238) TCGA-HV-A5A3-01 19 54327405 54327405 G A NLRP12 Silent p.D8D 0.20 TCGA-HV-A5A3-01 19 55711614 55711614 G A PTPRH Silent p.S470S 0.20 TCGA-HV-A5A3-01 1 111824378 111824378 A C CHIAP2 RNA 0.33 TCGA-HV-A5A3-01 1 150529967 150529967 C T ADAMTSL4 Intron 0.19 TCGA-HV-A5A3-01 1 19477078 19477078 G A UBR4 Silent p.L2475L 0.16 TCGA-HV-A5A3-01 1 248366501 248366501 C T OR2M3 Silent p.V44V 0.17 TCGA-HV-A5A3-01 1 39878506 39878506 G T KIAA0754 Missense_Mutation p.G721C 0.24 unknown(0) TCGA-HV-A5A3-01 20 30232606 30232606 C T COX4I2 Missense_Mutation p.R139W 0.16 tolerated(1) benign(0) TCGA-HV-A5A3-01 22 24717438 24717438 G A SPECC1L Missense_Mutation p.V164I 0.31 tolerated(0.45) benign(0.002) TCGA-HV-A5A3-01 22 46327243 46327243 C T WNT7B Missense_Mutation p.R102H 0.29 deleterious(0.01) possibly_damaging(0.87) TCGA-HV-A5A3-01 2 176044902 176044902 C A ATP5G3 Missense_Mutation p.R15L 0.21 tolerated(0.06) possibly_damaging(0.741) TCGA-HV-A5A3-01 2 207827279 207827279 C A CPO Missense_Mutation p.Q240K 0.19 deleterious(0) probably_damaging(0.999) TCGA-HV-A5A3-01 2 54133986 54133986 T C PSME4 Missense_Mutation p.H935R 0.28 tolerated(0.07) benign(0.119) TCGA-HV-A5A3-01 3 125876347 125876347 G C ALDH1L1 Missense_Mutation p.L133V 0.21 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-HV-A5A3-01 3 148563350 148563350 C A CPB1 Nonsense_Mutation p.Y306* 0.37 TCGA-HV-A5A3-01 3 185364845 185364845 C T IGF2BP2 Missense_Mutation p.V559I 0.22 tolerated(0.09) probably_damaging(0.993) TCGA-HV-A5A3-01 5 140604697 140604697 G A PCDHB14 Silent p.A540A 0.33 TCGA-HV-A5A3-01 5 141000918 141000918 C T HDAC3 3'UTR 0.20 TCGA-HV-A5A3-01 5 150945261 150945261 C T FAT2 Missense_Mutation p.A1078T 0.32 benign(0.022) TCGA-HV-A5A3-01 5 33577113 33577113 G C ADAMTS12 Missense_Mutation p.N1006K 0.12 tolerated(0.53) benign(0.005) TCGA-HV-A5A3-01 5 66462696 66462696 G T MAST4 Missense_Mutation p.K2563N 0.30 benign(0.36) TCGA-HV-A5A3-01 5 66462697 66462697 G T MAST4 Missense_Mutation p.D2564Y 0.30 possibly_damaging(0.847) TCGA-HV-A5A3-01 7 135418752 135418752 G A FAM180A Missense_Mutation p.R165C 0.23 deleterious(0.02) possibly_damaging(0.799) TCGA-HV-A5A3-01 7 143747854 143747854 C T OR2A5 Silent p.Y120Y 0.32 TCGA-HV-A5A3-01 7 98995523 98995523 C T PDAP1 Missense_Mutation p.R150Q 0.29 deleterious(0.03) possibly_damaging(0.857) TCGA-HV-A5A3-01 8 442574 442574 C - TDRP Frame_Shift_Del p.G128Vfs*39 0.37 TCGA-HV-A5A3-01 9 139620623 139620623 T G FAM69B 3'Flank 0.35 TCGA-HV-A5A4-01 10 112649342 112649342 A G PDCD4 Missense_Mutation p.T277A 0.30 tolerated(0.27) benign(0.002) TCGA-HV-A5A4-01 11 6432332 6432332 C T APBB1 Silent p.T82T 0.29 TCGA-HV-A5A4-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.46 deleterious(0) possibly_damaging(0.479) TCGA-HV-A5A4-01 13 46946268 46946268 C T KIAA0226L Missense_Mutation p.A115T 0.23 tolerated(0.33) benign(0.002) TCGA-HV-A5A4-01 14 22102229 22102231 TAG - OR10G2 In_Frame_Del p.Y257del 0.17 TCGA-HV-A5A4-01 15 67555549 67555549 C G IQCH Silent p.S88S 0.31 TCGA-HV-A5A4-01 16 1270897 1270897 G A CACNA1H Missense_Mutation p.R2322Q 0.27 tolerated_low_confidence(0.41) benign(0.001) TCGA-HV-A5A4-01 16 20357476 20357476 C T UMOD Missense_Mutation p.R385Q 0.25 tolerated(1) benign(0.065) TCGA-HV-A5A4-01 16 67189164 67189164 G T TRADD Missense_Mutation p.L155M 0.39 tolerated(0.06) probably_damaging(0.999) TCGA-HV-A5A4-01 17 42992592 42992592 C T GFAP Missense_Mutation p.R88H 0.23 tolerated(0.33) probably_damaging(0.979) TCGA-HV-A5A4-01 17 7476151 7476151 C A EIF4A1 5'UTR 0.23 TCGA-HV-A5A4-01 17 78086379 78086379 C T GAA Missense_Mutation p.A586V 0.27 deleterious(0.04) probably_damaging(0.927) TCGA-HV-A5A4-01 17 78282819 78282819 A T RNF213 Missense_Mutation p.I835F 0.25 possibly_damaging(0.486) TCGA-HV-A5A4-01 18 21136301 21136301 C T NPC1 Missense_Mutation p.R411Q 0.24 tolerated(0.43) benign(0.001) TCGA-HV-A5A4-01 18 48604736 48604736 G T SMAD4 Nonsense_Mutation p.E520* 0.37 TCGA-HV-A5A4-01 19 3740730 3740730 C T TJP3 Silent p.Y613Y 0.20 TCGA-HV-A5A4-01 19 4513275 4513275 C T PLIN4 Missense_Mutation p.G219S 0.26 deleterious(0.04) probably_damaging(0.955) TCGA-HV-A5A4-01 19 51378013 51378013 G T AC037199.1 Missense_Mutation p.P10T 0.25 unknown(0) TCGA-HV-A5A4-01 19 57327380 57327380 G A PEG3 Silent p.F810F 0.27 TCGA-HV-A5A4-01 1 11596541 11596541 C T PTCHD2 Missense_Mutation p.T1326M 0.29 deleterious(0) probably_damaging(0.997) TCGA-HV-A5A4-01 1 151131265 151131265 T C TNFAIP8L2 Missense_Mutation p.I31T 0.43 deleterious(0.03) benign(0.001) TCGA-HV-A5A4-01 1 154296116 154296116 C T AQP10 Missense_Mutation p.R181W 0.40 deleterious(0.04) probably_damaging(0.98) TCGA-HV-A5A4-01 1 155007014 155007014 C T DCST1 Silent p.G55G 0.16 TCGA-HV-A5A4-01 22 30975143 30975143 T C PES1 Missense_Mutation p.E501G 0.32 tolerated(0.09) possibly_damaging(0.727) TCGA-HV-A5A4-01 22 50717108 50717109 - GGAGCCC PLXNB2 Frame_Shift_Ins p.T1522Gfs*154 0.12 TCGA-HV-A5A4-01 2 179599224 179599224 G C TTN Missense_Mutation p.F5109L 0.24 TCGA-HV-A5A4-01 3 120673880 120673880 C T STXBP5L Nonsense_Mutation p.R95* 0.31 TCGA-HV-A5A4-01 3 138738644 138738644 G A PRR23B 3'UTR 0.28 TCGA-HV-A5A4-01 3 46008034 46008034 T C FYCO1 Missense_Mutation p.Q931R 0.10 tolerated(0.24) benign(0.006) TCGA-HV-A5A4-01 3 53218900 53218900 G T PRKCD Missense_Mutation p.M266I 0.21 deleterious(0.05) probably_damaging(0.997) TCGA-HV-A5A4-01 3 73433778 73433778 G A PDZRN3 Missense_Mutation p.R647C 0.30 deleterious(0) probably_damaging(0.932) TCGA-HV-A5A4-01 4 107845202 107845202 C T DKK2 Missense_Mutation p.R230H 0.25 deleterious(0) probably_damaging(0.987) TCGA-HV-A5A4-01 5 149513526 149513526 C T PDGFRB Missense_Mutation p.R226H 0.23 deleterious(0.01) possibly_damaging(0.77) TCGA-HV-A5A4-01 5 160063232 160063251 AGGGCACTGGGAAGGAAGCT TTGGCATGTAGAA ATP10B Frame_Shift_Del p.S356Ffs*14 0.15 TCGA-HV-A5A4-01 5 169509808 169509808 C A DOCK2 Missense_Mutation p.S1813R 0.09 tolerated_low_confidence(0.05) benign(0.001) TCGA-HV-A5A4-01 5 95768760 95768760 G A PCSK1 5'UTR 0.27 TCGA-HV-A5A4-01 6 152614868 152614868 C T SYNE1 Missense_Mutation p.R5956H 0.27 probably_damaging(0.994) TCGA-HV-A5A4-01 6 32944179 32944179 C T BRD2 Missense_Mutation p.H255Y 0.26 tolerated(1) benign(0.326) TCGA-HV-A5A4-01 6 90660535 90660535 G A BACH2 Silent p.S430S 0.21 TCGA-HV-A5A4-01 7 150746117 150746117 G A ASIC3 Missense_Mutation p.V49M 0.22 deleterious(0.05) benign(0.091) TCGA-HV-A5A4-01 7 151853388 151853388 G - KMT2C Frame_Shift_Del p.P3905Lfs*29 0.20 TCGA-HV-A5A4-01 7 5410118 5410118 C A TNRC18 Missense_Mutation p.E1369D 0.26 possibly_damaging(0.779) TCGA-HV-A5A4-01 7 78636417 78636417 C T MAGI2 Missense_Mutation p.R136H 0.30 tolerated(0.36) possibly_damaging(0.883) TCGA-HV-A5A4-01 7 99258126 99258126 T C CYP3A5 Missense_Mutation p.N341S 0.31 tolerated(0.05) benign(0.011) TCGA-HV-A5A4-01 9 140919489 140919489 G A CACNA1B Missense_Mutation p.V1051M 0.20 tolerated(0.26) possibly_damaging(0.887) TCGA-HV-A5A4-01 9 215392 215392 C T C9orf66 Missense_Mutation p.R2K 0.26 deleterious_low_confidence(0) benign(0.14) TCGA-HV-A5A4-01 9 95077968 95077968 C T NOL8 Silent p.A313A 0.32 TCGA-HV-A5A4-01 X 111697971 111697971 G A ZCCHC16 Silent p.T5T 0.25 TCGA-HV-A5A4-01 X 135618242 135618242 G A VGLL1 Silent p.T21T 0.28 TCGA-HV-A5A4-01 X 91090467 91090467 C T PCDH11X 5'UTR 0.07 TCGA-HV-A5A5-01 11 102816457 102816457 A T MMP13 Silent p.I411I 0.07 TCGA-HV-A5A5-01 11 64116904 64116904 G C CCDC88B Silent p.L906L 0.12 TCGA-HV-A5A5-01 12 43886398 43886398 G A ADAMTS20 Missense_Mutation p.T329I 0.08 deleterious(0.01) probably_damaging(0.947) TCGA-HV-A5A5-01 13 52661584 52661584 G A NEK5 Missense_Mutation p.R428C 0.04 deleterious(0.01) benign(0.346) TCGA-HV-A5A5-01 14 24569250 24569250 C T PCK2 Silent p.A354A 0.13 TCGA-HV-A5A5-01 16 24231517 24231517 C T PRKCB 3'UTR 0.05 TCGA-HV-A5A5-01 16 31102595 31102595 C A VKORC1 Missense_Mutation p.V118F 0.06 tolerated(0.11) benign(0.035) TCGA-HV-A5A5-01 16 56686964 56686964 G A MT1B Missense_Mutation p.R58H 0.08 deleterious(0) unknown(0) TCGA-HV-A5A5-01 17 4356344 4356344 C T SPNS3 Silent p.G319G 0.04 TCGA-HV-A5A5-01 17 7578235 7578235 T A TP53 Missense_Mutation p.Y205F 0.09 deleterious(0) probably_damaging(0.935) TCGA-HV-A5A5-01 18 67614045 67614045 C T CD226 Missense_Mutation p.V103I 0.06 tolerated(0.15) benign(0.217) TCGA-HV-A5A5-01 19 43702149 43702149 G A PSG4 Missense_Mutation p.P237S 0.07 tolerated(0.35) benign(0.394) TCGA-HV-A5A5-01 2 77746270 77746270 C T LRRTM4 Missense_Mutation p.R242H 0.10 deleterious(0.03) probably_damaging(0.976) TCGA-HV-A5A5-01 3 13860786 13860786 G A WNT7A Silent p.A235A 0.04 TCGA-HV-A5A5-01 4 114277476 114277476 T G ANK2 Missense_Mutation p.C2568G 0.08 possibly_damaging(0.907) TCGA-HV-A5A5-01 4 125592599 125592599 A G ANKRD50 Silent p.G611G 0.04 TCGA-HV-A5A5-01 4 184368445 184368445 C T CDKN2AIP Silent p.L536L 0.07 TCGA-HV-A5A5-01 5 24505322 24505322 A G CDH10 Missense_Mutation p.I431T 0.06 tolerated(0.15) benign(0.036) TCGA-HV-A5A5-01 6 41888624 41888624 T C MED20 Intron 0.10 TCGA-HV-A5A5-01 6 97424015 97424015 C A KLHL32 Missense_Mutation p.H56N 0.08 deleterious(0) probably_damaging(0.996) TCGA-HV-A5A5-01 7 128035057 128035057 G A IMPDH1 Missense_Mutation p.T479M 0.05 deleterious(0.01) possibly_damaging(0.743) TCGA-HV-A5A5-01 9 34311094 34311094 C T KIF24 Missense_Mutation p.R84H 0.08 tolerated(0.39) benign(0.001) TCGA-HV-A5A5-01 9 428461 428461 C G DOCK8 Missense_Mutation p.H1480D 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-HV-A5A5-01 X 18956750 18956750 C G PHKA2 Missense_Mutation p.V346L 0.08 tolerated(0.13) benign(0.003) TCGA-HV-A5A5-01 X 19392682 19392682 G A MAP3K15 Missense_Mutation p.R896C 0.07 deleterious(0) probably_damaging(0.999) TCGA-HV-A5A5-01 X 78426854 78426854 T A GPR174 Missense_Mutation p.F117Y 0.08 tolerated(1) benign(0.056) TCGA-HV-A5A5-01 X 84560887 84560887 C T POF1B Silent p.L449L 0.06 TCGA-HV-A5A6-01 10 122626196 122626196 A T WDR11 Silent p.A370A 0.35 TCGA-HV-A5A6-01 11 113675589 113675589 C T USP28 Splice_Site p.X860_splice 0.26 TCGA-HV-A5A6-01 11 18763931 18763931 G A PTPN5 Silent p.I201I 0.17 TCGA-HV-A5A6-01 11 56143815 56143815 C T OR8U1 Missense_Mutation p.S239L 0.29 deleterious(0) probably_damaging(0.999) TCGA-HV-A5A6-01 11 64533556 64533556 C T SF1 Intron 0.32 TCGA-HV-A5A6-01 11 67048254 67048254 C T ADRBK1 Silent p.H185H 0.31 TCGA-HV-A5A6-01 12 110655943 110655943 G A IFT81 Missense_Mutation p.C648Y 0.28 deleterious(0) probably_damaging(0.969) TCGA-HV-A5A6-01 12 130827607 130827607 C T PIWIL1 Missense_Mutation p.R51W 0.33 deleterious(0) probably_damaging(0.925) TCGA-HV-A5A6-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.37 deleterious(0) benign(0.361) TCGA-HV-A5A6-01 12 6080794 6080794 G A VWF Missense_Mutation p.R2507W 0.35 deleterious(0.01) possibly_damaging(0.876) TCGA-HV-A5A6-01 12 8380195 8380195 G A FAM90A1 5'UTR 0.15 TCGA-HV-A5A6-01 14 105420573 105420573 G A AHNAK2 Silent p.C405C 0.16 TCGA-HV-A5A6-01 14 24538728 24538728 G A LRRC16B 3'UTR 0.17 TCGA-HV-A5A6-01 14 57698417 57698417 T A EXOC5 Missense_Mutation p.S319C 0.34 deleterious(0.03) possibly_damaging(0.781) TCGA-HV-A5A6-01 15 25470355 25470355 A C SNORD115-30 RNA 0.16 TCGA-HV-A5A6-01 15 52903953 52903953 T C FAM214A Missense_Mutation p.R75G 0.14 deleterious(0) possibly_damaging(0.889) TCGA-HV-A5A6-01 15 99512680 99512680 G A PGPEP1L Silent p.D115D 0.15 TCGA-HV-A5A6-01 16 3293394 3293394 T C MEFV Missense_Mutation p.E698G 0.31 tolerated(0.08) probably_damaging(0.963) TCGA-HV-A5A6-01 16 55733527 55733527 G T SLC6A2 Missense_Mutation p.W517C 0.15 deleterious(0) probably_damaging(0.997) TCGA-HV-A5A6-01 16 70688501 70688501 C T IL34 Missense_Mutation p.T30M 0.10 deleterious(0.01) probably_damaging(0.97) TCGA-HV-A5A6-01 16 71913839 71913839 C T ZNF821 Missense_Mutation p.R4Q 0.15 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-HV-A5A6-01 16 72094379 72094379 G A HP Missense_Mutation p.D271N 0.08 tolerated(0.17) benign(0.12) TCGA-HV-A5A6-01 16 89724100 89724100 G A CHMP1A 5'UTR 0.26 TCGA-HV-A5A6-01 17 7574003 7574003 G - TP53 Frame_Shift_Del p.R342Efs*3 0.38 TCGA-HV-A5A6-01 19 14749135 14749135 G A EMR3 Silent p.I422I 0.15 TCGA-HV-A5A6-01 19 36219013 36219013 G A KMT2B Silent p.A1504A 0.09 TCGA-HV-A5A6-01 19 46878998 46878998 C T PPP5C Silent p.I167I 0.10 TCGA-HV-A5A6-01 19 51133050 51133050 A T SYT3 Missense_Mutation p.F351L 0.42 tolerated(0.08) benign(0.209) TCGA-HV-A5A6-01 19 56135868 56135868 G A ZNF784 Silent p.S20S 0.16 TCGA-HV-A5A6-01 19 8609328 8609328 G A MYO1F Silent p.S459S 0.18 TCGA-HV-A5A6-01 1 111702113 111702113 G T CEPT1 Nonsense_Mutation p.E151* 0.28 TCGA-HV-A5A6-01 1 113162484 113162484 T A CAPZA1 Missense_Mutation p.D6E 0.12 tolerated(1) benign(0) TCGA-HV-A5A6-01 1 113162485 113162485 C T CAPZA1 Missense_Mutation p.R7C 0.12 tolerated(0.06) benign(0.001) TCGA-HV-A5A6-01 1 151552137 151552137 A G TUFT1 Missense_Mutation p.K313E 0.16 deleterious(0) possibly_damaging(0.82) TCGA-HV-A5A6-01 1 16262018 16262018 C T SPEN Nonsense_Mutation p.Q3095* 0.13 TCGA-HV-A5A6-01 1 23420022 23420022 C G LUZP1 Missense_Mutation p.G245R 0.29 tolerated(0.12) probably_damaging(0.953) TCGA-HV-A5A6-01 1 99762345 99762345 G C LPPR4 Missense_Mutation p.G154R 0.32 tolerated(0.58) possibly_damaging(0.794) TCGA-HV-A5A6-01 20 17417442 17417442 G A PCSK2 Missense_Mutation p.A267T 0.27 deleterious(0.01) probably_damaging(0.96) TCGA-HV-A5A6-01 22 23596046 23596046 G A BCR Missense_Mutation p.R447H 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.84) TCGA-HV-A5A6-01 22 24658515 24658515 C T POM121L9P RNA 0.31 TCGA-HV-A5A6-01 22 50589311 50589311 G A MOV10L1 Missense_Mutation p.A959T 0.39 deleterious(0.01) benign(0.418) TCGA-HV-A5A6-01 2 168726199 168726199 G A B3GALT1 Missense_Mutation p.R217H 0.32 tolerated(0.14) benign(0.013) TCGA-HV-A5A6-01 2 24262175 24262175 A G C2orf44 Missense_Mutation p.S64P 0.28 tolerated(0.2) probably_damaging(0.986) TCGA-HV-A5A6-01 2 27449518 27449518 G A CAD Splice_Site p.X719_splice 0.31 TCGA-HV-A5A6-01 2 54045126 54045126 A G ERLEC1 3'UTR 0.31 TCGA-HV-A5A6-01 2 73901099 73901099 C T ALMS1P RNA 0.06 TCGA-HV-A5A6-01 2 75914998 75914999 - T GCFC2 Frame_Shift_Ins p.V549Sfs*42 0.14 TCGA-HV-A5A6-01 3 172534509 172534509 C T ECT2 Missense_Mutation p.T846I 0.29 deleterious(0) benign(0.172) TCGA-HV-A5A6-01 4 113511003 113511003 T A C4orf21 Missense_Mutation p.T1002S 0.41 tolerated(0.43) benign(0.194) TCGA-HV-A5A6-01 5 154394186 154394186 G A KIF4B Missense_Mutation p.R256H 0.48 deleterious(0) probably_damaging(0.982) TCGA-HV-A5A6-01 5 26889954 26889954 T C CDH9 Silent p.K501K 0.47 TCGA-HV-A5A6-01 5 434610 434610 G A AHRR Silent p.S607S 0.32 TCGA-HV-A5A6-01 6 15497190 15497190 C T JARID2 Silent p.R578R 0.21 TCGA-HV-A5A6-01 6 43251409 43251409 G A TTBK1 Silent p.A977A 0.19 TCGA-HV-A5A6-01 7 143826995 143826995 C T OR2A14 Missense_Mutation p.R264C 0.25 tolerated(0.05) benign(0.026) TCGA-HV-A5A6-01 7 23000935 23000935 A G FAM126A Silent p.N250N 0.07 TCGA-HV-A5A6-01 7 2473140 2473140 G A CHST12 Missense_Mutation p.R289H 0.18 tolerated(0.14) benign(0.001) TCGA-HV-A5A6-01 7 97863071 97863071 G T TECPR1 Missense_Mutation p.A445D 0.10 tolerated(0.67) benign(0.019) TCGA-HV-A5A6-01 9 135944558 135944560 AAG - CEL In_Frame_Del p.K405del 0.09 TCGA-HV-A5A6-01 9 21971196 21971198 CAT - CDKN2A In_Frame_Del p.M54del 0.35 TCGA-HV-A5A6-01 X 11187680 11187680 G A ARHGAP6 Missense_Mutation p.T585M 0.16 deleterious(0) probably_damaging(0.943) TCGA-HV-A5A6-01 X 70149579 70149579 C T SLC7A3 Missense_Mutation p.R90Q 0.25 deleterious(0.05) possibly_damaging(0.867) TCGA-HV-A7OL-01 10 23250963 23250963 G A ARMC3 Missense_Mutation p.D230N 0.20 deleterious(0.04) possibly_damaging(0.639) TCGA-HV-A7OL-01 11 113078690 113078690 C T NCAM1 Silent p.G353G 0.20 TCGA-HV-A7OL-01 11 57466302 57466302 A G ZDHHC5 Missense_Mutation p.N465S 0.15 deleterious(0.04) benign(0.098) TCGA-HV-A7OL-01 11 57559074 57559074 G A CTNND1 Missense_Mutation p.E42K 0.16 deleterious(0.01) benign(0.225) TCGA-HV-A7OL-01 11 64666137 64666137 G A ATG2A Missense_Mutation p.R1548W 0.20 deleterious(0) possibly_damaging(0.586) TCGA-HV-A7OL-01 11 76731441 76731441 A G ACER3 3'UTR 0.19 TCGA-HV-A7OL-01 11 85375165 85375165 T C CREBZF Missense_Mutation p.E252G 0.18 tolerated(0.23) probably_damaging(0.996) TCGA-HV-A7OL-01 11 89768759 89768759 G A TRIM49C Missense_Mutation p.R127H 0.13 tolerated(0.19) benign(0.01) TCGA-HV-A7OL-01 12 111758041 111758041 C A CUX2 Missense_Mutation p.A743D 0.16 deleterious(0.02) benign(0.082) TCGA-HV-A7OL-01 12 131487822 131487822 C T GPR133 Silent p.T373T 0.21 TCGA-HV-A7OL-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.25 deleterious(0) benign(0.361) TCGA-HV-A7OL-01 12 52388028 52388028 C A ACVR1B 3'Flank 0.12 TCGA-HV-A7OL-01 12 99640630 99640630 C T ANKS1B Missense_Mutation p.R590Q 0.18 tolerated(0.48) benign(0) TCGA-HV-A7OL-01 13 110434482 110434482 C T IRS2 Missense_Mutation p.G1307R 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.616) TCGA-HV-A7OL-01 15 33954961 33954961 C T RYR3 Missense_Mutation p.R1744W 0.16 possibly_damaging(0.462) TCGA-HV-A7OL-01 15 34130099 34130099 T C RYR3 Missense_Mutation p.M3973T 0.20 benign(0.028) TCGA-HV-A7OL-01 15 72338352 72338352 C T MYO9A Missense_Mutation p.V185I 0.19 deleterious(0) benign(0.201) TCGA-HV-A7OL-01 16 2024605 2024605 C T TBL3 Missense_Mutation p.R102C 0.19 deleterious(0.01) benign(0.42) TCGA-HV-A7OL-01 16 20976524 20976524 G A DNAH3 Silent p.Y2894Y 0.18 TCGA-HV-A7OL-01 16 3801767 3801767 C T CREBBP Missense_Mutation p.E1247K 0.20 unknown(0) TCGA-HV-A7OL-01 16 703653 703653 C T WDR90 Silent p.H454H 0.20 TCGA-HV-A7OL-01 17 44430255 44430255 C T ARL17B Missense_Mutation p.A64T 0.20 tolerated_low_confidence(1) benign(0) TCGA-HV-A7OL-01 17 56448270 56448270 A G RNF43 Splice_Site p.X125_splice 0.31 TCGA-HV-A7OL-01 17 7578538 7578538 T A TP53 Missense_Mutation p.N131I 0.28 deleterious(0) probably_damaging(0.999) TCGA-HV-A7OL-01 17 9684814 9684814 C T DHRS7C Silent p.V84V 0.22 TCGA-HV-A7OL-01 18 28725666 28725666 T - DSC1 Frame_Shift_Del p.I283Sfs*38 0.24 TCGA-HV-A7OL-01 19 39100239 39100239 A G MAP4K1 Missense_Mutation p.C335R 0.29 tolerated(0.56) benign(0.019) TCGA-HV-A7OL-01 19 55298074 55298074 G A KIR2DL1 3'Flank 0.18 TCGA-HV-A7OL-01 1 12779503 12779503 C G AADACL3 Missense_Mutation p.I8M 0.18 deleterious(0) possibly_damaging(0.73) TCGA-HV-A7OL-01 1 222802593 222802593 C T MIA3 Silent p.L677L 0.17 TCGA-HV-A7OL-01 1 232940983 232940984 - A MAP10 Frame_Shift_Ins p.T74Nfs*14 0.21 TCGA-HV-A7OL-01 1 235490256 235490256 T C ARID4B 5'UTR 0.17 TCGA-HV-A7OL-01 1 248004586 248004586 C A OR11L1 Missense_Mutation p.A205S 0.04 tolerated(0.16) possibly_damaging(0.862) TCGA-HV-A7OL-01 1 36939177 36939177 C T CSF3R Missense_Mutation p.V178M 0.19 tolerated(0.08) benign(0.164) TCGA-HV-A7OL-01 1 37947303 37947303 A G ZC3H12A Missense_Mutation p.I229V 0.19 deleterious(0) probably_damaging(0.998) TCGA-HV-A7OL-01 20 4771183 4771183 G A RASSF2 Missense_Mutation p.R151C 0.25 deleterious(0.01) probably_damaging(0.912) TCGA-HV-A7OL-01 20 60883799 60883799 G T ADRM1 Missense_Mutation p.E402D 0.15 tolerated(0.15) unknown(0) TCGA-HV-A7OL-01 20 60883800 60883800 G T ADRM1 Missense_Mutation p.D403Y 0.15 deleterious(0) unknown(0) TCGA-HV-A7OL-01 20 62187669 62187669 C T C20orf195 Missense_Mutation p.A218V 0.16 tolerated(0.87) benign(0.001) TCGA-HV-A7OL-01 21 43543258 43543258 A C UMODL1 Missense_Mutation p.S1177R 0.15 deleterious(0) probably_damaging(0.999) TCGA-HV-A7OL-01 2 10583672 10583672 C T ODC1 Missense_Mutation p.D204N 0.15 tolerated(0.05) benign(0.057) TCGA-HV-A7OL-01 2 107032411 107032411 T G RGPD3 Missense_Mutation p.E1653D 0.15 tolerated_low_confidence(0.11) benign(0) TCGA-HV-A7OL-01 2 171818252 171818252 A C GORASP2 Silent p.T301T 0.18 TCGA-HV-A7OL-01 2 176988911 176988911 C A HOXD9 3'UTR 0.17 TCGA-HV-A7OL-01 2 228855826 228855826 G T SPHKAP Missense_Mutation p.P1617T 0.20 deleterious(0) probably_damaging(0.982) TCGA-HV-A7OL-01 2 43452623 43452623 C - ZFP36L2 Frame_Shift_Del p.G107Afs*80 0.14 TCGA-HV-A7OL-01 2 54120082 54120082 A T PSME4 Missense_Mutation p.F1352I 0.18 deleterious(0.02) possibly_damaging(0.548) TCGA-HV-A7OL-01 3 101446386 101446386 G A CEP97 Splice_Site p.X115_splice 0.16 TCGA-HV-A7OL-01 3 186769122 186769122 G C ST6GAL1 Silent p.L231L 0.09 TCGA-HV-A7OL-01 3 52551596 52551596 G A STAB1 Missense_Mutation p.G1532R 0.17 deleterious(0) probably_damaging(1) TCGA-HV-A7OL-01 4 71508260 71508260 C A ENAM Missense_Mutation p.R373S 0.21 tolerated(0.08) possibly_damaging(0.492) TCGA-HV-A7OL-01 5 140755802 140755802 C T PCDHGA6 Missense_Mutation p.R718C 0.19 deleterious_low_confidence(0.01) benign(0.033) TCGA-HV-A7OL-01 5 65288599 65288599 G A ERBB2IP Missense_Mutation p.R18Q 0.18 deleterious(0) probably_damaging(0.997) TCGA-HV-A7OL-01 6 131894445 131894445 T C ARG1 Missense_Mutation p.I8T 0.25 deleterious(0) benign(0.068) TCGA-HV-A7OL-01 6 38690644 38690644 C T DNAH8 5'Flank 0.27 TCGA-HV-A7OL-01 6 71232278 71232278 C T FAM135A Silent p.Y364Y 0.24 TCGA-HV-A7OL-01 7 100204241 100204241 C T PCOLCE Missense_Mutation p.P310S 0.18 tolerated(0.08) benign(0.05) TCGA-HV-A7OL-01 7 53104235 53104235 G T POM121L12 Missense_Mutation p.A291S 0.14 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-HV-A7OL-01 7 94052353 94052353 C T COL1A2 Nonsense_Mutation p.R830* 0.20 TCGA-HV-A7OL-01 8 2041801 2041801 G A MYOM2 Missense_Mutation p.V670M 0.16 deleterious(0) probably_damaging(0.922) TCGA-HV-A7OL-01 9 132481624 132481624 G A PRRX2 Missense_Mutation p.R125H 0.07 deleterious(0) probably_damaging(0.975) TCGA-HV-A7OL-01 9 137593148 137593148 G A COL5A1 Missense_Mutation p.G208D 0.05 probably_damaging(1) TCGA-HV-A7OL-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.23 TCGA-HV-A7OL-01 9 79438590 79438590 T C PRUNE2 Silent p.G238G 0.16 TCGA-HV-A7OL-01 X 96185760 96185760 T G DIAPH2 Missense_Mutation p.L336R 0.34 deleterious(0) unknown(0) TCGA-HV-A7OP-01 10 104176584 104176584 C T PSD Missense_Mutation p.R71H 0.25 deleterious_low_confidence(0.02) probably_damaging(0.987) TCGA-HV-A7OP-01 10 105048170 105048170 C T INA Missense_Mutation p.S415L 0.33 tolerated(0.1) benign(0.003) TCGA-HV-A7OP-01 10 118460624 118460624 C T HSPA12A Missense_Mutation p.D91N 0.04 tolerated(0.05) benign(0.259) TCGA-HV-A7OP-01 10 128193005 128193005 C G C10orf90 Missense_Mutation p.R255T 0.30 deleterious(0) possibly_damaging(0.796) TCGA-HV-A7OP-01 10 132915167 132915167 C T TCERG1L Silent p.E430E 0.28 TCGA-HV-A7OP-01 10 22862387 22862387 C T PIP4K2A Splice_Site p.X165_splice 0.28 TCGA-HV-A7OP-01 10 24816938 24816938 T C KIAA1217 Missense_Mutation p.L991P 0.03 deleterious(0) probably_damaging(1) TCGA-HV-A7OP-01 10 61834899 61834899 G A ANK3 Missense_Mutation p.R1914W 0.07 probably_damaging(0.985) TCGA-HV-A7OP-01 10 73472564 73472564 C A C10orf105 3'UTR 0.60 TCGA-HV-A7OP-01 10 82331253 82331253 C T SH2D4B Silent p.I138I 0.12 TCGA-HV-A7OP-01 10 91162380 91162380 T A IFIT1 Silent p.T116T 0.31 TCGA-HV-A7OP-01 10 93221081 93221081 G A HECTD2 Missense_Mutation p.D160N 0.03 tolerated(0.26) benign(0.058) TCGA-HV-A7OP-01 11 105483022 105483022 C T GRIA4 Silent p.N36N 0.06 TCGA-HV-A7OP-01 11 34668171 34668172 - G EHF Frame_Shift_Ins p.A118Gfs*24 0.51 TCGA-HV-A7OP-01 11 55579038 55579038 T A OR5L1 Silent p.L32L 0.09 TCGA-HV-A7OP-01 11 62620497 62620497 C G SLC3A2 5'Flank 0.09 TCGA-HV-A7OP-01 11 65123359 65123368 CCAAGATGTC - TIGD3 Frame_Shift_Del p.K28Sfs*67 0.12 TCGA-HV-A7OP-01 12 122285009 122285009 G A HPD Silent p.I236I 0.23 TCGA-HV-A7OP-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.79 deleterious(0) benign(0.361) TCGA-HV-A7OP-01 12 38714204 38714204 A T ALG10B Missense_Mutation p.K204M 0.27 deleterious(0.01) benign(0.217) TCGA-HV-A7OP-01 12 58121196 58121196 G A AGAP2-AS1 Missense_Mutation p.A141T 0.87 possibly_damaging(0.695) TCGA-HV-A7OP-01 12 58158695 58158695 C G CYP27B1 Missense_Mutation p.E269Q 0.83 tolerated(0.06) probably_damaging(0.971) TCGA-HV-A7OP-01 12 7241475 7241475 C T C1R Silent p.S291S 0.16 TCGA-HV-A7OP-01 13 103298740 103298740 A C TPP2 Missense_Mutation p.Q830H 0.32 tolerated(0.24) probably_damaging(0.962) TCGA-HV-A7OP-01 13 24200926 24200926 C T TNFRSF19 Missense_Mutation p.P147L 0.27 deleterious(0.03) probably_damaging(0.958) TCGA-HV-A7OP-01 13 26273464 26273464 A G ATP8A2 Missense_Mutation p.K789E 0.04 deleterious(0) possibly_damaging(0.769) TCGA-HV-A7OP-01 13 31858882 31858882 T A B3GALTL Silent p.I316I 0.09 TCGA-HV-A7OP-01 13 39454821 39454821 G A FREM2 Missense_Mutation p.R3136K 0.03 tolerated_low_confidence(0.73) benign(0) TCGA-HV-A7OP-01 13 86370131 86370131 A T SLITRK6 Silent p.A171A 0.28 TCGA-HV-A7OP-01 14 30047559 30047559 A - PRKD1 Frame_Shift_Del p.I816Sfs*7 0.24 TCGA-HV-A7OP-01 14 34419830 34419830 G A EGLN3 Silent p.V43V 0.14 TCGA-HV-A7OP-01 14 57938236 57938237 - T C14orf105 Frame_Shift_Ins p.M243Nfs*7 0.61 TCGA-HV-A7OP-01 15 41043687 41043687 G T RMDN3 Missense_Mutation p.S154Y 0.84 deleterious(0.02) probably_damaging(0.994) TCGA-HV-A7OP-01 15 67482873 67482873 A T SMAD3 Nonstop_Mutation p.*426Lext*6 0.80 TCGA-HV-A7OP-01 15 75664478 75664478 C T SIN3A Missense_Mutation p.V1222M 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-HV-A7OP-01 16 29848107 29848107 G T MVP Missense_Mutation p.G246V 0.08 deleterious(0) probably_damaging(0.961) TCGA-HV-A7OP-01 16 57243042 57243042 T C RSPRY1 Silent p.D153D 0.10 TCGA-HV-A7OP-01 16 66998264 66998264 G A CES3 Missense_Mutation p.G189R 0.57 deleterious(0) probably_damaging(1) TCGA-HV-A7OP-01 16 68014188 68014188 G A DPEP3 Silent p.P57P 0.12 TCGA-HV-A7OP-01 16 68024785 68024785 G A DPEP2 Missense_Mutation p.S283L 0.08 deleterious(0.01) probably_damaging(1) TCGA-HV-A7OP-01 16 789832 789832 C T NARFL Intron 0.60 TCGA-HV-A7OP-01 17 14205233 14205233 G A HS3ST3B1 Missense_Mutation p.G133E 0.40 tolerated(0.07) benign(0.326) TCGA-HV-A7OP-01 17 60754766 60754766 G A MRC2 Silent p.P657P 0.37 TCGA-HV-A7OP-01 18 31241680 31241680 C T ASXL3 Silent p.H152H 0.06 TCGA-HV-A7OP-01 18 31709908 31709908 G A NOL4 Missense_Mutation p.S114L 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-HV-A7OP-01 19 22817239 22817239 C - ZNF492 5'UTR 0.22 TCGA-HV-A7OP-01 19 41622456 41622456 G T CYP2F1 Missense_Mutation p.D90Y 0.07 deleterious(0) probably_damaging(0.994) TCGA-HV-A7OP-01 19 55494011 55494011 C T NLRP2 Silent p.P315P 0.06 TCGA-HV-A7OP-01 1 116947163 116947163 A G ATP1A1 3'UTR 0.83 TCGA-HV-A7OP-01 1 150484272 150484272 C T ECM1 Missense_Mutation p.R377C 0.11 deleterious(0.02) possibly_damaging(0.899) TCGA-HV-A7OP-01 1 158390071 158390071 G A OR10K2 Nonsense_Mutation p.Q196* 0.24 TCGA-HV-A7OP-01 1 190067701 190067701 C T BRINP3 Missense_Mutation p.S583N 0.24 deleterious(0) probably_damaging(0.986) TCGA-HV-A7OP-01 1 228238532 228238532 G T WNT3A Silent p.G163G 0.03 TCGA-HV-A7OP-01 1 233489603 233489603 G A MLK4 Missense_Mutation p.G346D 0.04 deleterious(0.01) probably_damaging(1) TCGA-HV-A7OP-01 1 247875338 247875338 C T OR6F1 Silent p.T240T 0.09 TCGA-HV-A7OP-01 1 32381581 32381582 - TAA PTP4A2 In_Frame_Ins p.L34_K35insI 0.64 TCGA-HV-A7OP-01 1 3407102 3407102 G A MEGF6 Missense_Mutation p.A1539V 0.06 tolerated_low_confidence(0.2) benign(0.028) TCGA-HV-A7OP-01 1 53543466 53543466 C G PODN Missense_Mutation p.T331S 0.16 tolerated(0.07) possibly_damaging(0.88) TCGA-HV-A7OP-01 1 99772631 99772631 G A LPPR4 3'UTR 0.19 TCGA-HV-A7OP-01 20 23029062 23029062 G A THBD Silent p.G360G 0.16 TCGA-HV-A7OP-01 20 40049687 40049687 T C CHD6 Missense_Mutation p.H1863R 0.45 deleterious_low_confidence(0.04) benign(0.006) TCGA-HV-A7OP-01 20 55100020 55100020 C T FAM209A Silent p.T52T 0.08 TCGA-HV-A7OP-01 20 55904913 55904913 C T SPO11 5'UTR 0.44 TCGA-HV-A7OP-01 20 944604 944604 C T RSPO4 Missense_Mutation p.C190Y 0.12 deleterious(0) probably_damaging(0.992) TCGA-HV-A7OP-01 22 41621925 41621925 T C L3MBTL2 Missense_Mutation p.I495T 0.38 deleterious(0) possibly_damaging(0.885) TCGA-HV-A7OP-01 2 179546424 179546424 G A TTN Missense_Mutation p.P11046S 0.05 TCGA-HV-A7OP-01 2 27248501 27248501 C T MAPRE3 Missense_Mutation p.R174W 0.05 deleterious(0.04) possibly_damaging(0.696) TCGA-HV-A7OP-01 2 54855304 54855304 T G SPTBN1 Missense_Mutation p.L572R 0.38 deleterious(0) probably_damaging(0.996) TCGA-HV-A7OP-01 3 130293015 130293015 T A COL6A6 Missense_Mutation p.F1065I 0.44 tolerated(0.45) benign(0.048) TCGA-HV-A7OP-01 3 178951994 178951994 G A PIK3CA Missense_Mutation p.D1017N 0.41 deleterious(0.01) probably_damaging(0.94) TCGA-HV-A7OP-01 3 180688069 180688069 G A FXR1 Missense_Mutation p.R509Q 0.06 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-HV-A7OP-01 3 25637964 25637964 C T RARB Missense_Mutation p.L402F 0.43 deleterious(0) probably_damaging(0.995) TCGA-HV-A7OP-01 3 25668727 25668727 C T TOP2B Missense_Mutation p.R651H 0.43 deleterious(0) probably_damaging(0.931) TCGA-HV-A7OP-01 3 47308515 47308515 T G KIF9 Missense_Mutation p.K240T 0.14 deleterious(0) probably_damaging(0.999) TCGA-HV-A7OP-01 3 55508500 55508500 G A WNT5A Silent p.G183G 0.44 TCGA-HV-A7OP-01 3 64667008 64667008 T C ADAMTS9 Missense_Mutation p.Y183C 0.07 deleterious(0) probably_damaging(0.995) TCGA-HV-A7OP-01 4 134073206 134073206 G A PCDH10 Silent p.E637E 0.14 TCGA-HV-A7OP-01 4 151023709 151023709 G A DCLK2 Silent p.V167V 0.12 TCGA-HV-A7OP-01 4 26321449 26321449 G T RBPJ 5'UTR 0.84 TCGA-HV-A7OP-01 4 87653817 87653817 C A PTPN13 Missense_Mutation p.L586M 0.11 deleterious(0.02) possibly_damaging(0.577) TCGA-HV-A7OP-01 4 87968372 87968372 C - AFF1 Frame_Shift_Del p.R230Gfs*27 0.48 TCGA-HV-A7OP-01 5 112162891 112162891 C T APC Nonsense_Mutation p.R499* 0.82 TCGA-HV-A7OP-01 5 133478560 133478560 A T TCF7 Missense_Mutation p.I302F 0.10 deleterious(0) probably_damaging(0.923) TCGA-HV-A7OP-01 5 140256419 140256419 G A PCDHA12 Silent p.A454A 0.80 TCGA-HV-A7OP-01 5 140431042 140431043 - C PCDHB1 5'UTR 0.08 TCGA-HV-A7OP-01 5 140603142 140603142 G T PCDHB14 Missense_Mutation p.G22V 0.82 tolerated_low_confidence(0.53) benign(0.06) TCGA-HV-A7OP-01 5 33936896 33936896 C T RXFP3 Silent p.G17G 0.07 TCGA-HV-A7OP-01 6 151161016 151161017 AG - PLEKHG1 Frame_Shift_Del p.E1049Vfs*31 0.41 TCGA-HV-A7OP-01 6 16254859 16254859 G T GMPR Missense_Mutation p.V120L 0.43 tolerated(0.64) benign(0.007) TCGA-HV-A7OP-01 6 165715668 165715668 A G C6orf118 Missense_Mutation p.L48P 0.45 deleterious(0) probably_damaging(0.992) TCGA-HV-A7OP-01 6 3284091 3284091 C G SLC22A23 Silent p.V566V 0.07 TCGA-HV-A7OP-01 6 51618013 51618013 C T PKHD1 Missense_Mutation p.R2979Q 0.40 tolerated(0.16) benign(0.251) TCGA-HV-A7OP-01 6 56472575 56472575 C T DST Intron 0.42 TCGA-HV-A7OP-01 6 71246002 71246002 A T FAM135A Silent p.S1335S 0.40 TCGA-HV-A7OP-01 6 73751750 73751750 G A KCNQ5 Missense_Mutation p.R194K 0.06 deleterious(0) probably_damaging(0.999) TCGA-HV-A7OP-01 6 75884785 75884785 G A COL12A1 Silent p.D893D 0.07 TCGA-HV-A7OP-01 7 106508584 106508584 C T PIK3CG Missense_Mutation p.P193L 0.06 tolerated(0.08) benign(0.008) TCGA-HV-A7OP-01 7 14661065 14661065 C T DGKB Missense_Mutation p.V409M 0.10 tolerated(0.24) benign(0.058) TCGA-HV-A7OP-01 7 148851398 148851398 G A ZNF398 Missense_Mutation p.R129Q 0.44 deleterious(0) probably_damaging(0.984) TCGA-HV-A7OP-01 7 48313734 48313734 G A ABCA13 Missense_Mutation p.A1491T 0.38 benign(0.004) TCGA-HV-A7OP-01 7 803512 803512 C G HEATR2 Missense_Mutation p.H562D 0.39 deleterious(0) probably_damaging(0.912) TCGA-HV-A7OP-01 7 87229495 87229495 A C ABCB1 Missense_Mutation p.D2E 0.09 tolerated_low_confidence(0.42) benign(0) TCGA-HV-A7OP-01 7 91674456 91674456 C A AKAP9 Missense_Mutation p.S1766Y 0.44 possibly_damaging(0.632) TCGA-HV-A7OP-01 8 116599641 116599641 G A TRPS1 Silent p.L763L 0.13 TCGA-HV-A7OP-01 8 120118316 120118316 C T COLEC10 Silent p.S240S 0.42 TCGA-HV-A7OP-01 8 139145029 139145029 G T FAM135B Missense_Mutation p.A1343E 0.07 deleterious(0) benign(0.329) TCGA-HV-A7OP-01 8 145066693 145066693 A G GRINA Missense_Mutation p.I295V 0.38 tolerated(0.36) benign(0.017) TCGA-HV-A7OP-01 8 6301971 6301971 G T MCPH1 Missense_Mutation p.G243V 0.21 tolerated(0.25) benign(0.003) TCGA-HV-A7OP-01 8 68423884 68423884 G A CPA6 Silent p.L108L 0.42 TCGA-HV-A7OP-01 8 81399879 81399879 C T ZBTB10 Silent p.T278T 0.04 TCGA-HV-A7OP-01 9 118035 118035 C T FOXD4 Missense_Mutation p.V29I 0.04 tolerated(0.71) benign(0.025) TCGA-HV-A7OP-01 9 127996170 127996171 - AGA RABEPK In_Frame_Ins p.Q344_T345insK 0.12 TCGA-HV-A7OP-01 9 33948659 33948659 T C UBAP2 Intron 0.47 TCGA-HV-A7OP-01 9 35800075 35800075 G T NPR2 Silent p.L348L 0.06 TCGA-HV-A7OP-01 9 79966268 79966268 G A VPS13A Missense_Mutation p.G2442D 0.08 tolerated(0.06) probably_damaging(0.982) TCGA-HV-A7OP-01 9 95077502 95077502 C T NOL8 Missense_Mutation p.E469K 0.40 tolerated(0.08) benign(0.039) TCGA-HV-A7OP-01 X 119425154 119425154 C T TMEM255A Silent p.A102A 0.83 TCGA-HV-A7OP-01 X 138643810 138643810 C T F9 Silent p.D322D 0.90 TCGA-HV-A7OP-01 X 2840009 2840009 G A ARSD Missense_Mutation p.A84V 0.85 deleterious(0.02) possibly_damaging(0.793) TCGA-HV-AA8V-01 11 115047275 115047275 G A CADM1 Silent p.D416D 0.08 TCGA-HV-AA8V-01 11 33050274 33050274 T C DEPDC7 Missense_Mutation p.S240P 0.07 tolerated(1) benign(0) TCGA-HV-AA8V-01 11 9459508 9459508 G A IPO7 Missense_Mutation p.D826N 0.06 deleterious(0) benign(0.216) TCGA-HV-AA8V-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.09 deleterious(0) possibly_damaging(0.479) TCGA-HV-AA8V-01 12 85449402 85449402 T A LRRIQ1 Missense_Mutation p.N277K 0.06 tolerated(0.7) benign(0.009) TCGA-HV-AA8V-01 16 70721823 70721823 C A VAC14 3'UTR 0.06 TCGA-HV-AA8V-01 17 7578478 7578478 G C TP53 Missense_Mutation p.P151R 0.08 deleterious(0) probably_damaging(0.997) TCGA-HV-AA8V-01 18 21121386 21121386 C T NPC1 Missense_Mutation p.V753M 0.06 tolerated(0.1) benign(0.042) TCGA-HV-AA8V-01 18 48575159 48575159 C T SMAD4 Missense_Mutation p.A118V 0.08 deleterious(0.04) probably_damaging(0.971) TCGA-HV-AA8V-01 19 6417818 6417818 A G KHSRP Missense_Mutation p.I338T 0.05 deleterious(0.01) benign(0.09) TCGA-HV-AA8V-01 1 12785321 12785321 C T AADACL3 Silent p.F137F 0.08 TCGA-HV-AA8V-01 1 167802257 167802257 C A ADCY10 Silent p.V1187V 0.07 TCGA-HV-AA8V-01 1 19488970 19488970 A G UBR4 Missense_Mutation p.S1634P 0.09 possibly_damaging(0.841) TCGA-HV-AA8V-01 20 57268896 57268896 G A NPEPL1 Missense_Mutation p.R85Q 0.07 deleterious(0) probably_damaging(0.998) TCGA-HV-AA8V-01 20 57484420 57484420 C T GNAS Missense_Mutation p.R844C 0.08 deleterious(0.01) probably_damaging(1) TCGA-HV-AA8V-01 21 44317096 44317096 G T NDUFV3 Silent p.A36A 0.07 TCGA-HV-AA8V-01 22 17662742 17662742 C T CECR1 Silent p.R470R 0.06 TCGA-HV-AA8V-01 22 20939239 20939239 T C MED15 Missense_Mutation p.F634S 0.08 deleterious(0.01) probably_damaging(0.996) TCGA-HV-AA8V-01 22 36685180 36685180 C T MYH9 Missense_Mutation p.R1503H 0.06 possibly_damaging(0.735) TCGA-HV-AA8V-01 2 227660886 227660886 G A IRS1 Missense_Mutation p.R857W 0.10 deleterious(0) probably_damaging(0.993) TCGA-HV-AA8V-01 2 234749480 234749480 C A HJURP Missense_Mutation p.S649I 0.06 deleterious(0.04) benign(0.146) TCGA-HV-AA8V-01 2 39526942 39526942 C A MAP4K3 Missense_Mutation p.D374Y 0.08 tolerated(0.08) possibly_damaging(0.553) TCGA-HV-AA8V-01 3 128199973 128199973 C T GATA2 Silent p.P444P 0.09 TCGA-HV-AA8V-01 3 169550783 169550783 G A LRRIQ4 Missense_Mutation p.E448K 0.08 tolerated(0.82) benign(0.088) TCGA-HV-AA8V-01 3 3084848 3084848 G A CNTN4 Splice_Site p.X900_splice 0.06 TCGA-HV-AA8V-01 3 45751115 45751115 C T SACM1L Silent p.F153F 0.08 TCGA-HV-AA8V-01 4 41747993 41748013 GCCGCCGCTGCCGCTGCCGCC - PHOX2B In_Frame_Del p.A254_A260del 0.24 TCGA-HV-AA8V-01 5 140744450 140744450 G A PCDHGA5 Missense_Mutation p.G185R 0.08 tolerated_low_confidence(0.15) benign(0.26) TCGA-HV-AA8V-01 5 79084856 79084856 T G CMYA5 Missense_Mutation p.F3873C 0.08 probably_damaging(0.993) TCGA-HV-AA8V-01 6 107391539 107391539 G A BEND3 Missense_Mutation p.R286W 0.06 deleterious(0.04) possibly_damaging(0.888) TCGA-HV-AA8V-01 6 55739380 55739380 T A BMP5 Missense_Mutation p.E95V 0.06 deleterious(0.04) benign(0.219) TCGA-HV-AA8V-01 7 134613527 134613527 G A CALD1 Missense_Mutation p.D32N 0.08 deleterious(0) unknown(0) TCGA-HV-AA8V-01 8 121535626 121535626 T C MTBP 3'UTR 0.07 TCGA-HV-AA8V-01 8 127569401 127569401 C A FAM84B Silent p.L78L 0.08 TCGA-HV-AA8V-01 8 143603456 143603456 G A BAI1 Missense_Mutation p.R1052H 0.13 deleterious(0) benign(0.001) TCGA-HV-AA8V-01 8 145580129 145580129 T A FBXL6 Silent p.G352G 0.05 TCGA-HV-AA8V-01 8 23297388 23297388 C A ENTPD4 Missense_Mutation p.G308V 0.10 deleterious(0) probably_damaging(1) TCGA-HV-AA8V-01 8 24324330 24324330 C T ADAM7 Silent p.N136N 0.06 TCGA-HV-AA8V-01 8 8560232 8560232 G A CLDN23 Silent p.E108E 0.09 TCGA-HV-AA8V-01 X 102931572 102931572 T A MORF4L2 Missense_Mutation p.E128D 0.12 deleterious(0.03) benign(0.348) TCGA-HV-AA8V-01 X 152159280 152159280 C T PNMA5 Missense_Mutation p.R288H 0.12 tolerated(0.08) possibly_damaging(0.867) TCGA-HV-AA8V-01 X 27839749 27839749 G T MAGEB10 Missense_Mutation p.G109V 0.16 deleterious(0.01) possibly_damaging(0.704) TCGA-HV-AA8X-01 10 118318720 118318721 - A PNLIP Frame_Shift_Ins p.D329Efs*2 0.24 TCGA-HV-AA8X-01 10 121551520 121551521 - GAGG INPP5F Frame_Shift_Ins p.D197Efs*11 0.29 TCGA-HV-AA8X-01 10 121590808 121590808 A C MCMBP 3'UTR 0.35 TCGA-HV-AA8X-01 10 26432452 26432452 C A MYO3A Missense_Mutation p.L780M 0.27 deleterious(0) probably_damaging(0.95) TCGA-HV-AA8X-01 10 6157416 6157416 C T RBM17 Missense_Mutation p.A368V 0.04 deleterious(0) probably_damaging(0.998) TCGA-HV-AA8X-01 11 11398786 11398786 C T GALNT18 Missense_Mutation p.R307H 0.27 tolerated(0.23) probably_damaging(0.97) TCGA-HV-AA8X-01 11 124749808 124749808 G A ROBO3 Missense_Mutation p.V1308M 0.29 tolerated_low_confidence(0.11) benign(0.006) TCGA-HV-AA8X-01 11 76982196 76982196 C T GDPD4 Missense_Mutation p.V127M 0.28 tolerated(0.14) benign(0.092) TCGA-HV-AA8X-01 12 117977587 117977587 G A KSR2 Missense_Mutation p.P542S 0.42 tolerated(0.4) probably_damaging(1) TCGA-HV-AA8X-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.25 deleterious(0) benign(0.361) TCGA-HV-AA8X-01 12 49523505 49523505 G A TUBA1B Missense_Mutation p.R2C 0.43 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-HV-AA8X-01 12 6672578 6672578 G A NOP2 Missense_Mutation p.S297F 0.42 deleterious(0) benign(0.401) TCGA-HV-AA8X-01 12 76779953 76779953 C A OSBPL8 Nonsense_Mutation p.E510* 0.42 TCGA-HV-AA8X-01 14 20586444 20586444 C T OR4K17 Silent p.F293F 0.41 TCGA-HV-AA8X-01 14 34270091 34270091 G A NPAS3 Missense_Mutation p.G860S 0.34 tolerated_low_confidence(0.11) benign(0.015) TCGA-HV-AA8X-01 15 36989551 36989551 G A C15orf41 Silent p.L168L 0.05 TCGA-HV-AA8X-01 15 41813192 41813192 C T RPAP1 Silent p.S1064S 0.24 TCGA-HV-AA8X-01 15 89382241 89382241 G A ACAN Missense_Mutation p.E140K 0.34 deleterious(0) unknown(0) TCGA-HV-AA8X-01 15 93007522 93007522 G A ST8SIA2 Silent p.P345P 0.06 TCGA-HV-AA8X-01 16 24883505 24883505 G A SLC5A11 Missense_Mutation p.A113T 0.05 deleterious(0) possibly_damaging(0.697) TCGA-HV-AA8X-01 16 67424140 67424140 G A TPPP3 Silent p.D156D 0.28 TCGA-HV-AA8X-01 16 85743833 85743833 C T C16orf74 Missense_Mutation p.D37N 0.37 tolerated_low_confidence(1) benign(0.003) TCGA-HV-AA8X-01 17 33771812 33771812 G T SLFN13 Silent p.T296T 0.17 TCGA-HV-AA8X-01 17 40825305 40825305 C T PLEKHH3 Missense_Mutation p.G220R 0.41 tolerated(0.47) unknown(0) TCGA-HV-AA8X-01 17 48650072 48650072 T C CACNA1G Missense_Mutation p.Y302H 0.32 tolerated(0.21) benign(0.02) TCGA-HV-AA8X-01 17 62080283 62080283 G A ICAM2 Missense_Mutation p.P218S 0.24 tolerated(0.08) possibly_damaging(0.666) TCGA-HV-AA8X-01 17 7577505 7577505 T A TP53 Missense_Mutation p.D259V 0.39 deleterious(0.01) probably_damaging(0.991) TCGA-HV-AA8X-01 18 21894217 21894217 C G OSBPL1A Missense_Mutation p.R322T 0.16 deleterious(0.03) possibly_damaging(0.889) TCGA-HV-AA8X-01 18 21894274 21894274 C T OSBPL1A Missense_Mutation p.C303Y 0.17 tolerated(0.57) probably_damaging(0.964) TCGA-HV-AA8X-01 18 21897296 21897296 C T OSBPL1A Silent p.R267R 0.42 TCGA-HV-AA8X-01 18 21898597 21898597 C A OSBPL1A Missense_Mutation p.A234S 0.21 tolerated(0.73) benign(0.014) TCGA-HV-AA8X-01 18 48575209 48575209 C T SMAD4 Nonsense_Mutation p.R135* 0.07 TCGA-HV-AA8X-01 19 18311123 18311151 TGGGGTACACTCACCAGTCCTGCACTGCA - RAB3A Splice_Site p.X111_splice 0.16 TCGA-HV-AA8X-01 19 22574796 22574796 G A ZNF98 Missense_Mutation p.A414V 0.36 tolerated(0.05) possibly_damaging(0.634) TCGA-HV-AA8X-01 19 50399114 50399114 G A IL4I1 Silent p.A92A 0.05 TCGA-HV-AA8X-01 19 54696142 54696142 C T TSEN34 Silent p.Y221Y 0.17 TCGA-HV-AA8X-01 19 55378105 55378105 G A KIR3DL2 Silent p.T429T 0.32 TCGA-HV-AA8X-01 1 150443776 150443776 T - RPRD2 Frame_Shift_Del p.S785Lfs*29 0.38 TCGA-HV-AA8X-01 1 15541498 15541498 G A TMEM51 5'UTR 0.11 TCGA-HV-AA8X-01 1 227171759 227171759 C A ADCK3 Intron 0.22 TCGA-HV-AA8X-01 1 8418382 8418382 G A RERE Missense_Mutation p.R1405C 0.11 unknown(0) TCGA-HV-AA8X-01 20 33588844 33588844 G - MYH7B Frame_Shift_Del p.E1829Nfs*3 0.31 TCGA-HV-AA8X-01 2 107040051 107040051 T G RGPD3 Missense_Mutation p.K1458Q 0.05 deleterious(0.03) probably_damaging(0.972) TCGA-HV-AA8X-01 2 116066832 116066832 C A DPP10 Missense_Mutation p.S30R 0.27 tolerated(0.11) benign(0.064) TCGA-HV-AA8X-01 2 152420121 152420121 G A NEB Missense_Mutation p.A6231V 0.24 benign(0.025) TCGA-HV-AA8X-01 2 216274779 216274779 G A FN1 Missense_Mutation p.T667I 0.50 deleterious(0.01) possibly_damaging(0.643) TCGA-HV-AA8X-01 2 29296840 29296840 G A C2orf71 Silent p.T96T 0.32 TCGA-HV-AA8X-01 2 5833606 5833606 G A SOX11 Silent p.P251P 0.27 TCGA-HV-AA8X-01 2 95542520 95542520 G A TEKT4 3'UTR 0.21 TCGA-HV-AA8X-01 2 98928694 98928694 G A VWA3B Missense_Mutation p.R1256H 0.38 tolerated_low_confidence(0.6) benign(0) TCGA-HV-AA8X-01 3 126291164 126291164 G T TXNRD3NB Missense_Mutation p.L75M 0.26 possibly_damaging(0.82) TCGA-HV-AA8X-01 3 12856671 12856671 C T CAND2 Silent p.D346D 0.46 TCGA-HV-AA8X-01 3 27385769 27385769 A T NEK10 Missense_Mutation p.I119K 0.46 deleterious(0.04) benign(0.076) TCGA-HV-AA8X-01 3 52554552 52554552 G A STAB1 Missense_Mutation p.R1879Q 0.37 tolerated(0.67) benign(0.002) TCGA-HV-AA8X-01 4 100140375 100140375 G T ADH6 5'UTR 0.32 TCGA-HV-AA8X-01 4 95210760 95210760 C G SMARCAD1 3'UTR 0.32 TCGA-HV-AA8X-01 5 114506859 114506859 C T TRIM36 Intron 0.32 TCGA-HV-AA8X-01 5 118484750 118484750 G T DMXL1 Missense_Mutation p.M1076I 0.15 tolerated(0.11) benign(0.133) TCGA-HV-AA8X-01 5 54527370 54527370 G A CCNO Missense_Mutation p.R296W 0.28 deleterious(0.02) possibly_damaging(0.72) TCGA-HV-AA8X-01 5 79745505 79745505 C G ZFYVE16 Missense_Mutation p.L1067V 0.26 deleterious(0) probably_damaging(0.997) TCGA-HV-AA8X-01 5 92924048 92924048 G A NR2F1 Missense_Mutation p.D297N 0.16 deleterious(0.04) probably_damaging(0.925) TCGA-HV-AA8X-01 6 130761706 130761706 G T TMEM200A Missense_Mutation p.D47Y 0.48 deleterious(0) probably_damaging(0.999) TCGA-HV-AA8X-01 6 42571440 42571440 G A UBR2 Missense_Mutation p.A216T 0.29 tolerated(0.4) benign(0.003) TCGA-HV-AA8X-01 7 123269120 123269120 G A ASB15 Missense_Mutation p.V358I 0.26 tolerated(0.06) possibly_damaging(0.721) TCGA-HV-AA8X-01 7 142458419 142458421 TGA - PRSS1 In_Frame_Del p.D22del 0.14 TCGA-HV-AA8X-01 7 27182747 27182747 C T HOXA5 Silent p.A160A 0.35 TCGA-HV-AA8X-01 7 2998183 2998183 G A CARD11 5'UTR 0.28 TCGA-HV-AA8X-01 8 144804265 144804265 G A MAPK15 Silent p.P493P 0.32 TCGA-HV-AA8X-01 X 125299404 125299404 G A DCAF12L2 Silent p.G168G 0.26 TCGA-HV-AA8X-01 X 44969494 44969503 AGTAAGTCAA - KDM6A Splice_Site p.X1392_splice 0.31 TCGA-HV-AA8X-01 X 69713266 69713266 G A DLG3 Intron 0.29 TCGA-HZ-7289-01 10 50725028 50725028 C A ERCC6-PGBD3 Nonsense_Mutation p.E513* 0.08 TCGA-HZ-7289-01 10 81928927 81928927 T C ANXA11 Missense_Mutation p.Y120C 0.32 deleterious(0.04) unknown(0) TCGA-HZ-7289-01 10 93389816 93389816 G A PPP1R3C Silent p.D274D 0.22 TCGA-HZ-7289-01 11 108124539 108124539 A C ATM Splice_Site p.X633_splice 0.60 TCGA-HZ-7289-01 11 110494918 110494918 G C ARHGAP20 Silent p.G157G 0.53 TCGA-HZ-7289-01 11 124310146 124310146 G T OR8B8 Missense_Mutation p.T279N 0.10 deleterious_low_confidence(0.02) probably_damaging(0.939) TCGA-HZ-7289-01 11 5290746 5290746 C T HBE1 Missense_Mutation p.A85T 0.37 tolerated(1) benign(0.004) TCGA-HZ-7289-01 12 109278890 109278890 G A DAO Silent p.A36A 0.25 TCGA-HZ-7289-01 12 124242536 124242536 G C ATP6V0A2 Missense_Mutation p.S843T 0.07 tolerated(0.44) benign(0.051) TCGA-HZ-7289-01 12 124825185 124825185 G A NCOR2 Silent p.P1767P 0.26 TCGA-HZ-7289-01 12 25002795 25002795 T G BCAT1 Missense_Mutation p.N212T 0.05 tolerated(0.33) benign(0.003) TCGA-HZ-7289-01 12 26580903 26580903 G A ITPR2 Silent p.L2296L 0.10 TCGA-HZ-7289-01 12 330084 330084 G T SLC6A13 3'UTR 0.03 TCGA-HZ-7289-01 12 40704299 40704299 C T LRRK2 Missense_Mutation p.R1462C 0.18 tolerated(0.15) possibly_damaging(0.518) TCGA-HZ-7289-01 12 52884454 52884454 G A KRT6A Missense_Mutation p.R326C 0.17 deleterious(0.02) possibly_damaging(0.632) TCGA-HZ-7289-01 12 54348806 54348806 G T HOXC12 Silent p.A31A 0.05 TCGA-HZ-7289-01 12 68707443 68707443 A C MDM1 Missense_Mutation p.D530E 0.68 deleterious(0) probably_damaging(0.997) TCGA-HZ-7289-01 14 103807469 103807469 G A EIF5 3'UTR 0.25 TCGA-HZ-7289-01 14 50100984 50100984 G A DNAAF2 Missense_Mutation p.A295V 0.23 tolerated(0.13) possibly_damaging(0.67) TCGA-HZ-7289-01 14 60212959 60212959 A T RTN1 Nonsense_Mutation p.L161* 0.08 TCGA-HZ-7289-01 14 73459982 73459982 G A ZFYVE1 Missense_Mutation p.H358Y 0.42 tolerated(0.15) benign(0.004) TCGA-HZ-7289-01 14 74424980 74424980 G T COQ6 Missense_Mutation p.L204F 0.06 deleterious(0) probably_damaging(0.997) TCGA-HZ-7289-01 15 41501725 41501725 G A EXD1 Missense_Mutation p.R112C 0.60 deleterious(0) probably_damaging(1) TCGA-HZ-7289-01 15 42059147 42059147 C G MGA Missense_Mutation p.A2956G 0.09 deleterious_low_confidence(0.02) benign(0.003) TCGA-HZ-7289-01 15 75932236 75932236 G C IMP3 Missense_Mutation p.R92G 0.05 tolerated(0.14) benign(0.004) TCGA-HZ-7289-01 16 57787404 57787404 G A KATNB1 Missense_Mutation p.E384K 0.24 tolerated(0.15) possibly_damaging(0.824) TCGA-HZ-7289-01 16 744694 744694 G T FBXL16 Missense_Mutation p.Q411K 0.07 tolerated(0.4) benign(0.007) TCGA-HZ-7289-01 16 78056626 78056626 C T CLEC3A Missense_Mutation p.R44C 0.24 deleterious(0.03) probably_damaging(0.939) TCGA-HZ-7289-01 16 84797846 84797846 C T USP10 Silent p.T603T 0.42 TCGA-HZ-7289-01 16 90160926 90160926 G A TUBB8P7 RNA 0.24 TCGA-HZ-7289-01 17 18025706 18025706 C T MYO15A Missense_Mutation p.P1198S 0.19 unknown(0) TCGA-HZ-7289-01 17 37842226 37842226 G A PGAP3 Silent p.T76T 0.20 TCGA-HZ-7289-01 17 38555132 38555132 C T TOP2A Missense_Mutation p.D1116N 0.50 tolerated(0.16) benign(0.014) TCGA-HZ-7289-01 17 40831612 40831612 A C CCR10 Missense_Mutation p.S350A 0.15 tolerated(0.21) probably_damaging(0.952) TCGA-HZ-7289-01 17 5365761 5365761 G A DHX33 Missense_Mutation p.R186W 0.20 deleterious(0.02) probably_damaging(0.91) TCGA-HZ-7289-01 17 65941849 65941849 G A BPTF Missense_Mutation p.R2342H 0.21 possibly_damaging(0.888) TCGA-HZ-7289-01 17 72584875 72584875 G A CD300LD Missense_Mutation p.R52W 0.23 tolerated(1) benign(0) TCGA-HZ-7289-01 17 72943312 72943312 G A OTOP3 Silent p.S454S 0.19 TCGA-HZ-7289-01 18 61460480 61460480 T G SERPINB7 Missense_Mutation p.L102R 0.36 deleterious(0) probably_damaging(0.95) TCGA-HZ-7289-01 19 35176007 35176007 C T ZNF302 Silent p.H355H 0.17 TCGA-HZ-7289-01 19 4048140 4048140 G C ZBTB7A Missense_Mutation p.N455K 0.29 deleterious(0) possibly_damaging(0.739) TCGA-HZ-7289-01 19 40883778 40883778 G A PLD3 Missense_Mutation p.R424H 0.16 deleterious(0) possibly_damaging(0.774) TCGA-HZ-7289-01 19 50390732 50390732 G T TBC1D17 Splice_Site p.X482_splice 0.36 TCGA-HZ-7289-01 19 53209243 53209243 T C ZNF611 Silent p.Q355Q 0.36 TCGA-HZ-7289-01 19 55710122 55710122 C A PTPRH Missense_Mutation p.G527C 0.15 possibly_damaging(0.886) TCGA-HZ-7289-01 19 56424179 56424179 C A NLRP13 Missense_Mutation p.W335L 0.34 deleterious(0) probably_damaging(0.999) TCGA-HZ-7289-01 19 57327021 57327021 C T PEG3 Missense_Mutation p.R930H 0.31 tolerated(0.13) benign(0.035) TCGA-HZ-7289-01 1 100613486 100613486 C T TRMT13 Missense_Mutation p.A285V 0.16 tolerated(0.17) benign(0.309) TCGA-HZ-7289-01 1 110883874 110883874 G T RBM15 Missense_Mutation p.R616L 0.24 deleterious(0) possibly_damaging(0.891) TCGA-HZ-7289-01 1 118539013 118539013 T C SPAG17 Missense_Mutation p.E1678G 0.34 deleterious(0) probably_damaging(0.996) TCGA-HZ-7289-01 1 178885503 178885504 - A RALGPS2 3'UTR 0.19 TCGA-HZ-7289-01 1 99167440 99167440 A G SNX7 Missense_Mutation p.K369R 0.18 tolerated(0.43) benign(0.028) TCGA-HZ-7289-01 20 30681703 30681703 A G HCK Missense_Mutation p.Y377C 0.15 deleterious(0) probably_damaging(0.995) TCGA-HZ-7289-01 20 57484420 57484420 C T GNAS Missense_Mutation p.R844C 0.47 deleterious(0.01) probably_damaging(1) TCGA-HZ-7289-01 20 57564956 57564956 C T NELFCD Missense_Mutation p.A252V 0.25 tolerated(1) benign(0.004) TCGA-HZ-7289-01 22 41257516 41257516 A G DNAJB7 Silent p.G161G 0.17 TCGA-HZ-7289-01 22 50657234 50657234 G A TUBGCP6 Silent p.D1573D 0.32 TCGA-HZ-7289-01 2 100210198 100210198 C T AFF3 Missense_Mutation p.R667H 0.43 deleterious(0) probably_damaging(0.977) TCGA-HZ-7289-01 2 109380688 109380688 C T RANBP2 Silent p.R1231R 0.19 TCGA-HZ-7289-01 2 167760152 167760152 C G XIRP2 Missense_Mutation p.P54A 0.53 benign(0.009) TCGA-HZ-7289-01 2 171242714 171242714 G A MYO3B Missense_Mutation p.G436R 0.48 deleterious(0) probably_damaging(1) TCGA-HZ-7289-01 2 219530636 219530636 T C RNF25 Intron 0.17 TCGA-HZ-7289-01 2 234627926 234627926 G T UGT1A4 Missense_Mutation p.V154F 0.18 tolerated(1) benign(0.028) TCGA-HZ-7289-01 2 234681097 234681097 C T UGT1A4 Silent p.V499V 0.45 TCGA-HZ-7289-01 2 25467064 25467064 C T DNMT3A Missense_Mutation p.R604Q 0.21 tolerated(0.05) benign(0.431) TCGA-HZ-7289-01 2 27351452 27351452 C T ABHD1 Silent p.P86P 0.42 TCGA-HZ-7289-01 2 70188473 70188473 C T ASPRV1 Nonsense_Mutation p.W116* 0.43 TCGA-HZ-7289-01 3 127642283 127642283 C A KBTBD12 Missense_Mutation p.H127N 0.20 tolerated(0.58) benign(0.123) TCGA-HZ-7289-01 3 133099106 133099106 C T TMEM108 Missense_Mutation p.P184L 0.38 tolerated_low_confidence(0.35) benign(0.003) TCGA-HZ-7289-01 3 169710773 169710773 A G SEC62 Silent p.Q374Q 0.06 TCGA-HZ-7289-01 3 48452387 48452387 A C PLXNB1 Missense_Mutation p.V1769G 0.13 deleterious(0) probably_damaging(1) TCGA-HZ-7289-01 3 48508064 48508064 C T TREX1 Nonsense_Mutation p.Q59* 0.17 TCGA-HZ-7289-01 4 103806273 103806273 G A CISD2 Intron 0.06 TCGA-HZ-7289-01 4 126373660 126373660 G A FAT4 Missense_Mutation p.R3830H 0.16 benign(0) TCGA-HZ-7289-01 4 154624846 154624846 G A TLR2 Missense_Mutation p.D263N 0.06 deleterious(0) probably_damaging(1) TCGA-HZ-7289-01 4 22456513 22456513 C T GPR125 Missense_Mutation p.R150Q 0.35 tolerated(1) benign(0.147) TCGA-HZ-7289-01 4 48548200 48548200 G A FRYL Silent p.S1721S 0.37 TCGA-HZ-7289-01 5 1294338 1294338 C T TERT Silent p.A221A 0.12 TCGA-HZ-7289-01 5 140230505 140230505 A G PCDHA9 Intron 0.04 TCGA-HZ-7289-01 5 140230517 140230517 C G PCDHA9 Intron 0.03 TCGA-HZ-7289-01 5 16676227 16676227 A - MYO10 Frame_Shift_Del p.Y1527Tfs*26 0.32 TCGA-HZ-7289-01 5 81283497 81283497 G C ATG10 Missense_Mutation p.K36N 0.23 deleterious(0) probably_damaging(0.974) TCGA-HZ-7289-01 6 119295669 119295669 C T FAM184A Missense_Mutation p.E947K 0.27 deleterious(0.01) possibly_damaging(0.788) TCGA-HZ-7289-01 6 35050548 35050548 C T ANKS1A Silent p.H930H 0.05 TCGA-HZ-7289-01 6 56393693 56393693 G A DST Nonsense_Mutation p.Q3253* 0.28 TCGA-HZ-7289-01 6 5771561 5771561 C A FARS2 Missense_Mutation p.R419S 0.48 deleterious(0) probably_damaging(0.999) TCGA-HZ-7289-01 7 100320819 100320819 T C EPO 3'UTR 0.50 TCGA-HZ-7289-01 7 102518012 102518012 G A FBXL13 Nonsense_Mutation p.R513* 0.14 TCGA-HZ-7289-01 7 41729138 41729138 G T INHBA 3'UTR 0.25 TCGA-HZ-7289-01 7 73008053 73008053 C T MLXIPL 3'UTR 0.20 TCGA-HZ-7289-01 7 94879384 94879384 C A PPP1R9A Missense_Mutation p.T738N 0.23 tolerated(0.27) benign(0.007) TCGA-HZ-7289-01 8 101052308 101052308 G T RGS22 Missense_Mutation p.T649N 0.49 tolerated(0.07) benign(0.01) TCGA-HZ-7289-01 8 131793086 131793086 G A ADCY8 Silent p.G1102G 0.24 TCGA-HZ-7289-01 8 144776010 144776010 C T ZNF707 Silent p.D142D 0.22 TCGA-HZ-7289-01 9 110064366 110064366 A - RAD23B Frame_Shift_Del p.N68Tfs*7 0.17 TCGA-HZ-7289-01 9 113166766 113166766 C G SVEP1 Missense_Mutation p.W3169C 0.34 probably_damaging(1) TCGA-HZ-7289-01 9 126165765 126165765 C T DENND1A Missense_Mutation p.R498H 0.14 deleterious(0.03) probably_damaging(0.985) TCGA-HZ-7289-01 9 137809657 137809657 G T FCN1 Missense_Mutation p.H21N 0.16 tolerated(0.1) benign(0.005) TCGA-HZ-7289-01 9 97207438 97207438 T A HIATL1 Missense_Mutation p.S235T 0.37 tolerated(0.1) benign(0.141) TCGA-HZ-7289-01 X 139038807 139038807 T A CXorf66 Missense_Mutation p.M112L 0.71 tolerated(0.34) benign(0) TCGA-HZ-7918-01 10 105206747 105206747 C G CALHM2 3'UTR 0.11 TCGA-HZ-7918-01 10 16562659 16562659 G A C1QL3 Nonsense_Mutation p.Q136* 0.04 TCGA-HZ-7918-01 10 3185639 3185639 C A PITRM1 Missense_Mutation p.V864L 0.06 deleterious(0) probably_damaging(0.993) TCGA-HZ-7918-01 10 61552865 61552865 G A CCDC6 Missense_Mutation p.P412L 0.13 deleterious(0.01) benign(0.143) TCGA-HZ-7918-01 10 79589222 79589222 G A DLG5 Silent p.I692I 0.03 TCGA-HZ-7918-01 11 113105776 113105776 C A NCAM1 Missense_Mutation p.T621N 0.20 deleterious(0.01) probably_damaging(0.953) TCGA-HZ-7918-01 11 118375783 118375783 C T KMT2A Missense_Mutation p.P3059L 0.04 possibly_damaging(0.656) TCGA-HZ-7918-01 11 122850021 122850021 G C BSX Missense_Mutation p.S136C 0.05 deleterious(0) probably_damaging(0.998) TCGA-HZ-7918-01 11 5289744 5289744 C G HBE1 Missense_Mutation p.K133N 0.17 deleterious(0) probably_damaging(0.998) TCGA-HZ-7918-01 11 60197072 60197072 C T MS4A5 5'UTR 0.15 TCGA-HZ-7918-01 11 62648627 62648627 G C SLC3A2 Missense_Mutation p.K146N 0.15 deleterious(0) probably_damaging(0.996) TCGA-HZ-7918-01 11 65351822 65351822 C G EHBP1L1 Missense_Mutation p.N1068K 0.04 deleterious(0) probably_damaging(1) TCGA-HZ-7918-01 11 66331559 66331559 C T CTSF Silent p.K460K 0.10 TCGA-HZ-7918-01 11 67067334 67067334 C T ANKRD13D Missense_Mutation p.A306V 0.09 tolerated(0.37) probably_damaging(0.936) TCGA-HZ-7918-01 11 67076881 67076899 TTGAACATGGCCCGGGAGA - SSH3 Frame_Shift_Del p.N360Tfs*64 0.14 TCGA-HZ-7918-01 11 73555970 73555980 CCCAGTATGTT - MRPL48 Frame_Shift_Del p.Y109Pfs*8 0.20 TCGA-HZ-7918-01 11 74977124 74977124 G C ARRB1 3'UTR 0.11 TCGA-HZ-7918-01 11 8704288 8704288 T C RPL27A 5'UTR 0.21 TCGA-HZ-7918-01 12 104373759 104373759 G A TDG Missense_Mutation p.R106K 0.09 tolerated(0.48) benign(0.298) TCGA-HZ-7918-01 12 13219646 13219646 G A KIAA1467 Missense_Mutation p.V309I 0.04 tolerated(0.11) benign(0.048) TCGA-HZ-7918-01 12 2760901 2760901 G C CACNA1C Silent p.R1395R 0.16 TCGA-HZ-7918-01 12 40499348 40499348 G A SLC2A13 Missense_Mutation p.S88F 0.14 deleterious(0) probably_damaging(0.997) TCGA-HZ-7918-01 12 46245520 46245520 G C ARID2 Missense_Mutation p.G1205A 0.16 tolerated_low_confidence(0.21) probably_damaging(0.996) TCGA-HZ-7918-01 12 62860794 62860794 G A MON2 5'UTR 0.45 TCGA-HZ-7918-01 12 6692545 6692545 C A CHD4 Splice_Site p.X1294_splice 0.03 TCGA-HZ-7918-01 13 100617947 100617947 T A ZIC5 Missense_Mutation p.D559V 0.26 deleterious(0) probably_damaging(0.999) TCGA-HZ-7918-01 14 103996579 103996579 C T TRMT61A Silent p.Y88Y 0.17 TCGA-HZ-7918-01 14 21861651 21861651 C T CHD8 Silent p.E2101E 0.16 TCGA-HZ-7918-01 14 22458938 22458938 C T TRAV16 Silent p.L30L 0.15 TCGA-HZ-7918-01 14 31355263 31355270 GCTGTACA - COCH Frame_Shift_Del p.A408Vfs*4 0.12 TCGA-HZ-7918-01 14 35873637 35873637 C G NFKBIA Missense_Mutation p.E72Q 0.13 deleterious(0.03) possibly_damaging(0.48) TCGA-HZ-7918-01 15 27778056 27778056 A T GABRG3 3'UTR 0.13 TCGA-HZ-7918-01 15 40954405 40954405 G C CASC5 3'UTR 0.19 TCGA-HZ-7918-01 15 63481790 63481790 T C RAB8B 5'UTR 0.18 TCGA-HZ-7918-01 15 65158129 65158129 C G PLEKHO2 3'UTR 0.14 TCGA-HZ-7918-01 15 65793003 65793003 G A DPP8 Silent p.L179L 0.12 TCGA-HZ-7918-01 15 73045100 73045100 A G ADPGK Missense_Mutation p.L358P 0.18 deleterious(0) probably_damaging(0.978) TCGA-HZ-7918-01 15 81295381 81295381 G T MESDC1 Missense_Mutation p.A257S 0.09 tolerated(0.31) benign(0.015) TCGA-HZ-7918-01 16 69375677 69375677 A C NIP7 3'UTR 0.08 TCGA-HZ-7918-01 16 89611106 89611106 G A SPG7 Missense_Mutation p.D459N 0.14 deleterious(0) probably_damaging(0.998) TCGA-HZ-7918-01 16 89764126 89764126 C T SPATA2L Silent p.E297E 0.12 TCGA-HZ-7918-01 16 90162368 90162368 T C TUBB8P7 RNA 0.15 TCGA-HZ-7918-01 17 11650939 11650939 G A DNAH9 Missense_Mutation p.G2156S 0.11 benign(0.179) TCGA-HZ-7918-01 17 27857472 27857472 C T TAOK1 Silent p.I732I 0.12 TCGA-HZ-7918-01 17 29325974 29325984 GCCAGCTCTCT - RNF135 Frame_Shift_Del p.Q356Mfs*24 0.18 TCGA-HZ-7918-01 17 3661083 3661083 C A ITGAE Missense_Mutation p.G313C 0.16 deleterious(0) probably_damaging(1) TCGA-HZ-7918-01 17 39114945 39114945 A G KRT39 Missense_Mutation p.C462R 0.03 tolerated(0.56) benign(0.006) TCGA-HZ-7918-01 17 40010103 40010103 G A KLHL11 Silent p.Y672Y 0.14 TCGA-HZ-7918-01 17 56620313 56620313 G T C17orf47 Missense_Mutation p.P412H 0.09 deleterious(0) probably_damaging(0.979) TCGA-HZ-7918-01 17 67522730 67522730 G T MAP2K6 Missense_Mutation p.R254L 0.12 deleterious(0.04) benign(0.258) TCGA-HZ-7918-01 17 79801863 79801863 C G P4HB 3'UTR 0.32 TCGA-HZ-7918-01 17 80049208 80049208 G A FASN Missense_Mutation p.P461L 0.14 deleterious(0) possibly_damaging(0.761) TCGA-HZ-7918-01 18 46783384 46783384 T A DYM Missense_Mutation p.I486F 0.15 tolerated(0.08) benign(0.342) TCGA-HZ-7918-01 19 15354198 15354198 C G BRD4 Missense_Mutation p.L894F 0.07 possibly_damaging(0.587) TCGA-HZ-7918-01 19 17311139 17311139 G C MYO9B Missense_Mutation p.D1426H 0.08 tolerated(0.08) probably_damaging(0.95) TCGA-HZ-7918-01 19 2877458 2877458 G A ZNF556 Missense_Mutation p.A168T 0.16 tolerated(0.79) benign(0.007) TCGA-HZ-7918-01 19 34685499 34685499 C T LSM14A Missense_Mutation p.P80S 0.13 deleterious(0) benign(0.257) TCGA-HZ-7918-01 19 38229307 38229307 G T ZNF573 3'UTR 0.07 TCGA-HZ-7918-01 19 40711993 40711993 G A MAP3K10 Missense_Mutation p.R455H 0.19 deleterious(0) probably_damaging(0.97) TCGA-HZ-7918-01 19 41884321 41884321 G C TMEM91 Missense_Mutation p.R36T 0.05 tolerated_low_confidence(0.46) benign(0.092) TCGA-HZ-7918-01 19 45315574 45315574 A C BCAM Missense_Mutation p.E120A 0.06 deleterious(0.03) possibly_damaging(0.627) TCGA-HZ-7918-01 19 49520322 49520322 A C LHB Splice_Site p.X5_splice 0.09 TCGA-HZ-7918-01 19 49547870 49547870 A T CGB5 Missense_Mutation p.T18S 0.17 tolerated(0.2) benign(0.008) TCGA-HZ-7918-01 19 51503919 51503919 G A KLK8 Silent p.V42V 0.09 TCGA-HZ-7918-01 19 52497760 52497760 T C ZNF615 Missense_Mutation p.Q201R 0.12 deleterious(0.04) benign(0.275) TCGA-HZ-7918-01 19 56565133 56565133 C T NLRP5 Silent p.C1086C 0.13 TCGA-HZ-7918-01 19 56701318 56701318 C T ZSCAN5B Missense_Mutation p.V456I 0.04 tolerated(0.07) benign(0.395) TCGA-HZ-7918-01 19 5783339 5783339 A T PRR22 Missense_Mutation p.C307S 0.12 tolerated(0.77) benign(0.002) TCGA-HZ-7918-01 19 7743463 7743463 A G CTD-3214H19.16 Missense_Mutation p.I27V 0.15 tolerated_low_confidence(0.49) benign(0) TCGA-HZ-7918-01 19 8661292 8661292 C A ADAMTS10 Silent p.L363L 0.10 TCGA-HZ-7918-01 19 9801486 9801489 AGTG - ZNF812 Frame_Shift_Del p.F230Lfs*10 0.17 TCGA-HZ-7918-01 1 110768648 110768664 CTGGCCTCACCCAACCC - KCNC4 Frame_Shift_Del p.T559Lfs*39 0.15 TCGA-HZ-7918-01 1 112020662 112020662 G A C1orf162 Missense_Mutation p.E129K 0.16 tolerated(0.15) probably_damaging(0.981) TCGA-HZ-7918-01 1 117087113 117087113 T C CD58 Missense_Mutation p.K62E 0.19 deleterious(0) probably_damaging(0.999) TCGA-HZ-7918-01 1 149920861 149920869 CCTGGCTTA - OTUD7B Splice_Site p.X413_splice 0.17 TCGA-HZ-7918-01 1 151040172 151040172 G C MLLT11 3'UTR 0.10 TCGA-HZ-7918-01 1 154525225 154525225 C G UBE2Q1 Missense_Mutation p.Q267H 0.04 deleterious(0.02) benign(0.019) TCGA-HZ-7918-01 1 154544140 154544140 C G CHRNB2 Missense_Mutation p.L281V 0.10 deleterious(0) probably_damaging(0.999) TCGA-HZ-7918-01 1 158390123 158390123 G A OR10K2 Silent p.F178F 0.16 TCGA-HZ-7918-01 1 158517108 158517108 G T OR6Y1 Missense_Mutation p.T263N 0.14 tolerated(0.08) probably_damaging(0.995) TCGA-HZ-7918-01 1 161139773 161139773 G T PPOX Missense_Mutation p.V316L 0.09 tolerated(0.18) possibly_damaging(0.636) TCGA-HZ-7918-01 1 185966578 185966578 G C HMCN1 Missense_Mutation p.D1266H 0.14 benign(0.398) TCGA-HZ-7918-01 1 197404147 197404147 C G CRB1 Missense_Mutation p.Q1052E 0.04 tolerated(0.1) possibly_damaging(0.669) TCGA-HZ-7918-01 1 206822032 206822032 G A DYRK3 Missense_Mutation p.E497K 0.03 deleterious(0) benign(0.371) TCGA-HZ-7918-01 1 220326745 220326745 A C RAB3GAP2 Missense_Mutation p.L1217V 0.18 deleterious(0) probably_damaging(0.999) TCGA-HZ-7918-01 1 44680376 44680376 G C DMAP1 Missense_Mutation p.D67H 0.13 deleterious(0) probably_damaging(0.993) TCGA-HZ-7918-01 1 45486422 45486422 G T ZSWIM5 Missense_Mutation p.Q830K 0.14 deleterious(0.03) unknown(0) TCGA-HZ-7918-01 1 54518946 54518946 C G TMEM59 5'UTR 0.13 TCGA-HZ-7918-01 20 43703783 43703783 T A STK4 Missense_Mutation p.I477K 0.05 deleterious(0) probably_damaging(0.965) TCGA-HZ-7918-01 20 43703792 43703792 A T STK4 Missense_Mutation p.K480M 0.04 deleterious(0) probably_damaging(0.999) TCGA-HZ-7918-01 20 61591929 61591929 C T SLC17A9 Silent p.S157S 0.10 TCGA-HZ-7918-01 20 62729444 62729444 T A OPRL1 Missense_Mutation p.W175R 0.09 deleterious(0) probably_damaging(1) TCGA-HZ-7918-01 21 47614458 47614458 G T LSS Silent p.A645A 0.20 TCGA-HZ-7918-01 2 109524464 109524464 G A EDAR Missense_Mutation p.A272V 0.12 deleterious(0) probably_damaging(0.99) TCGA-HZ-7918-01 2 135988368 135988368 T C ZRANB3 Missense_Mutation p.T557A 0.07 tolerated(0.75) benign(0.012) TCGA-HZ-7918-01 2 143959733 143959733 C T ARHGAP15 Missense_Mutation p.H66Y 0.17 tolerated(0.22) probably_damaging(0.959) TCGA-HZ-7918-01 2 171323216 171323216 G C MYO3B Silent p.V1003V 0.13 TCGA-HZ-7918-01 2 28849295 28849295 G T PLB1 Missense_Mutation p.D1194Y 0.12 deleterious(0.01) possibly_damaging(0.722) TCGA-HZ-7918-01 2 42511790 42511790 G T EML4 Missense_Mutation p.D320Y 0.13 deleterious(0) probably_damaging(1) TCGA-HZ-7918-01 2 60688255 60688255 C A BCL11A Missense_Mutation p.D598Y 0.15 deleterious(0.01) possibly_damaging(0.861) TCGA-HZ-7918-01 2 88751603 88751603 G A FOXI3 RNA 0.28 TCGA-HZ-7918-01 2 95815575 95815575 G T ZNF514 Missense_Mutation p.L219I 0.03 deleterious(0) possibly_damaging(0.736) TCGA-HZ-7918-01 3 11851103 11851103 G C TAMM41 Silent p.T254T 0.08 TCGA-HZ-7918-01 3 129020839 129020839 G C HMCES Missense_Mutation p.D228H 0.16 deleterious(0) probably_damaging(0.983) TCGA-HZ-7918-01 3 164908435 164908435 C T SLITRK3 Missense_Mutation p.D62N 0.11 deleterious(0) probably_damaging(0.998) TCGA-HZ-7918-01 3 184079221 184079221 T G CLCN2 Missense_Mutation p.Q16P 0.12 tolerated(0.22) benign(0.229) TCGA-HZ-7918-01 3 27297832 27297832 T C NEK10 Missense_Mutation p.E682G 0.09 tolerated(0.07) possibly_damaging(0.74) TCGA-HZ-7918-01 3 27759190 27759190 C A EOMES Nonsense_Mutation p.E478* 0.08 TCGA-HZ-7918-01 3 45533136 45533136 G A LARS2 Missense_Mutation p.G456D 0.17 deleterious(0) probably_damaging(1) TCGA-HZ-7918-01 4 128804674 128804674 A G PLK4 Silent p.L101L 0.24 TCGA-HZ-7918-01 4 152638043 152638043 C T PET112 Missense_Mutation p.D209N 0.11 deleterious(0) probably_damaging(0.997) TCGA-HZ-7918-01 4 153332931 153332931 C T FBXW7 Missense_Mutation p.G9S 0.17 deleterious_low_confidence(0) unknown(0) TCGA-HZ-7918-01 4 15572024 15572024 G T CC2D2A Missense_Mutation p.D1167Y 0.19 deleterious(0) probably_damaging(0.967) TCGA-HZ-7918-01 4 16258063 16258063 G A TAPT1-AS1 RNA 0.07 TCGA-HZ-7918-01 4 189065010 189065010 G C TRIML1 Missense_Mutation p.E252Q 0.17 tolerated(0.22) benign(0.287) TCGA-HZ-7918-01 4 47462175 47462175 A C COMMD8 Missense_Mutation p.L70V 0.12 tolerated(0.33) benign(0.015) TCGA-HZ-7918-01 4 48605373 48605373 C G FRYL Missense_Mutation p.L289F 0.13 deleterious(0) probably_damaging(0.975) TCGA-HZ-7918-01 5 122272452 122272452 G C SNX24 Missense_Mutation p.M28I 0.23 tolerated(0.45) benign(0.023) TCGA-HZ-7918-01 5 154395716 154395716 A C KIF4B Missense_Mutation p.D766A 0.14 deleterious(0.05) benign(0.41) TCGA-HZ-7918-01 5 155756568 155756568 G A SGCD 5'UTR 0.12 TCGA-HZ-7918-01 5 177576618 177576618 G C NHP2 3'UTR 0.17 TCGA-HZ-7918-01 5 180056837 180056837 T A FLT4 Splice_Site p.X226_splice 0.43 TCGA-HZ-7918-01 5 76507011 76507011 G A PDE8B Silent p.A87A 0.41 TCGA-HZ-7918-01 6 116579984 116579984 C T TSPYL4 5'Flank 0.09 TCGA-HZ-7918-01 6 155123170 155123170 C T SCAF8 Silent p.A224A 0.22 TCGA-HZ-7918-01 6 160492963 160492963 A C IGF2R Missense_Mutation p.S1489R 0.04 deleterious(0.01) probably_damaging(0.975) TCGA-HZ-7918-01 6 25670278 25670278 A T SCGN Nonsense_Mutation p.K149* 0.15 TCGA-HZ-7918-01 6 25670281 25670281 C A SCGN Missense_Mutation p.L150M 0.15 deleterious(0) probably_damaging(0.997) TCGA-HZ-7918-01 6 2838132 2838132 G A SERPINB1 Silent p.V136V 0.09 TCGA-HZ-7918-01 6 32020759 32020759 C G TNXB Missense_Mutation p.E2933Q 0.18 possibly_damaging(0.859) TCGA-HZ-7918-01 6 43305986 43305986 C A ZNF318 Missense_Mutation p.S1917I 0.12 benign(0.219) TCGA-HZ-7918-01 6 52146932 52146932 A G MCM3 Missense_Mutation p.C193R 0.13 deleterious(0) probably_damaging(0.994) TCGA-HZ-7918-01 6 52996784 52996811 TAACTAACTCAAAAATCCAACCTGGAAA - GCM1 Splice_Site p.X145_splice 0.11 TCGA-HZ-7918-01 6 83076114 83076114 A C TPBG 3'UTR 0.15 TCGA-HZ-7918-01 6 85457659 85457659 G A TBX18 Silent p.V306V 0.13 TCGA-HZ-7918-01 7 135418815 135418815 G C FAM180A Missense_Mutation p.Q144E 0.12 deleterious(0) probably_damaging(0.994) TCGA-HZ-7918-01 7 42012195 42012195 G C GLI3 Missense_Mutation p.T615S 0.15 deleterious(0.01) probably_damaging(0.955) TCGA-HZ-7918-01 7 72718971 72718971 G A NSUN5 Silent p.L208L 0.08 TCGA-HZ-7918-01 7 72718972 72718972 A T NSUN5 Missense_Mutation p.L208H 0.08 deleterious(0) probably_damaging(0.966) TCGA-HZ-7918-01 7 87178760 87178760 A G ABCB1 Silent p.R543R 0.16 TCGA-HZ-7918-01 7 95818665 95818665 G T SLC25A13 Silent p.R292R 0.17 TCGA-HZ-7918-01 8 100155279 100155279 C G VPS13B Missense_Mutation p.L577V 0.30 tolerated(0.27) possibly_damaging(0.636) TCGA-HZ-7918-01 8 124267697 124267697 C T ZHX1 Missense_Mutation p.E164K 0.04 deleterious(0.03) benign(0.079) TCGA-HZ-7918-01 8 124664765 124664792 GCTGGGGGCCAACTGGCTCTGCAAGTAC - KLHL38 Frame_Shift_Del p.Y126Tfs*5 0.19 TCGA-HZ-7918-01 8 133595976 133595976 A T LRRC6 Silent p.T397T 0.09 TCGA-HZ-7918-01 8 142222650 142222650 G C SLC45A4 Missense_Mutation p.I598M 0.05 deleterious(0.02) possibly_damaging(0.495) TCGA-HZ-7918-01 8 143427196 143427196 T G TSNARE1 Missense_Mutation p.E49A 0.06 deleterious_low_confidence(0) benign(0.265) TCGA-HZ-7918-01 8 144650380 144650380 G T MROH6 Missense_Mutation p.L566M 0.15 tolerated(0.12) probably_damaging(0.999) TCGA-HZ-7918-01 8 145154701 145154701 C G SHARPIN Missense_Mutation p.E188D 0.10 tolerated(0.2) possibly_damaging(0.593) TCGA-HZ-7918-01 8 22864416 22864416 C G RHOBTB2 Missense_Mutation p.H242D 0.13 deleterious(0.04) possibly_damaging(0.829) TCGA-HZ-7918-01 8 41834718 41834718 C G KAT6A Missense_Mutation p.D391H 0.09 possibly_damaging(0.885) TCGA-HZ-7918-01 8 48744458 48744458 G A PRKDC Silent p.L2727L 0.15 TCGA-HZ-7918-01 8 68062034 68062034 G C CSPP1 Missense_Mutation p.M659I 0.12 deleterious(0) probably_damaging(0.935) TCGA-HZ-7918-01 8 97311970 97311970 C G PTDSS1 Missense_Mutation p.Q217E 0.07 deleterious(0.02) probably_damaging(0.975) TCGA-HZ-7918-01 9 100328234 100328234 G A TMOD1 Silent p.A241A 0.16 TCGA-HZ-7918-01 9 116822475 116822475 G A AMBP 3'UTR 0.15 TCGA-HZ-7918-01 9 125273681 125273681 A G OR1J2 Missense_Mutation p.T201A 0.18 deleterious_low_confidence(0.03) benign(0.049) TCGA-HZ-7918-01 9 132395107 132395107 T A NTMT1 Missense_Mutation p.I42N 0.16 deleterious(0) probably_damaging(0.971) TCGA-HZ-7918-01 9 132662705 132662705 C T FNBP1 Missense_Mutation p.S517N 0.10 deleterious(0.03) benign(0.053) TCGA-HZ-7918-01 9 139902234 139902234 G C ABCA2 3'UTR 0.10 TCGA-HZ-7918-01 9 32634851 32634851 A G TAF1L Silent p.L243L 0.08 TCGA-HZ-7918-01 9 3271027 3271027 T C RFX3 Missense_Mutation p.D393G 0.11 deleterious(0.03) benign(0.334) TCGA-HZ-7918-01 9 33468069 33468069 C T NOL6 Missense_Mutation p.M461I 0.05 deleterious(0.03) possibly_damaging(0.893) TCGA-HZ-7918-01 9 35095294 35095294 A T PIGO Missense_Mutation p.V90E 0.06 tolerated(0.81) benign(0.011) TCGA-HZ-7918-01 9 36390574 36390574 G C RNF38 Missense_Mutation p.P18A 0.13 tolerated_low_confidence(0.36) benign(0.002) TCGA-HZ-7918-01 X 128624058 128624058 C T SMARCA1 Missense_Mutation p.D643N 0.23 deleterious(0) probably_damaging(0.996) TCGA-HZ-7918-01 X 128696369 128696369 G A OCRL Silent p.L316L 0.20 TCGA-HZ-7918-01 X 47446054 47446054 G C TIMP1 Silent p.L196L 0.05 TCGA-HZ-7918-01 X 48932556 48932556 C T WDR45 Missense_Mutation p.G331E 0.06 deleterious(0) probably_damaging(0.999) TCGA-HZ-7918-01 X 48932560 48932560 C G WDR45 Missense_Mutation p.D330H 0.06 deleterious(0) probably_damaging(0.991) TCGA-HZ-7919-01 10 121510593 121510593 G A INPP5F Missense_Mutation p.D35N 0.23 deleterious(0.02) probably_damaging(0.992) TCGA-HZ-7919-01 10 51748340 51748340 T G AGAP6 5'Flank 0.08 TCGA-HZ-7919-01 11 117058103 117058103 G C SIDT2 Missense_Mutation p.R342P 0.17 tolerated(0.29) benign(0.414) TCGA-HZ-7919-01 11 124626110 124626110 T C ESAM Silent p.P200P 0.24 TCGA-HZ-7919-01 11 33094069 33094069 G A TCP11L1 Silent p.Q459Q 0.18 TCGA-HZ-7919-01 11 56019769 56019769 C T OR5T3 Missense_Mutation p.P32S 0.22 tolerated_low_confidence(0.17) benign(0.005) TCGA-HZ-7919-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.28 deleterious(0.03) benign(0.376) TCGA-HZ-7919-01 12 5155075 5155075 G A KCNA5 Missense_Mutation p.V588I 0.22 tolerated_low_confidence(0.41) benign(0) TCGA-HZ-7919-01 12 52818190 52818190 C G KRT75 3'UTR 0.21 TCGA-HZ-7919-01 12 53202606 53202606 C G KRT4 Missense_Mutation p.S288T 0.19 deleterious(0.01) benign(0.355) TCGA-HZ-7919-01 12 57144844 57144844 A G PRIM1 Missense_Mutation p.I80T 0.15 deleterious(0) probably_damaging(0.95) TCGA-HZ-7919-01 14 21458225 21458225 C T METTL17 Missense_Mutation p.P22S 0.19 tolerated_low_confidence(0.09) benign(0.015) TCGA-HZ-7919-01 14 76330128 76330128 C T TTLL5 Nonsense_Mutation p.Q1149* 0.20 TCGA-HZ-7919-01 15 45406819 45406819 G A DUOXA2 Missense_Mutation p.G6S 0.20 deleterious(0.03) benign(0.201) TCGA-HZ-7919-01 15 69553486 69553486 A C GLCE Missense_Mutation p.Q216P 0.24 deleterious(0) probably_damaging(0.998) TCGA-HZ-7919-01 15 71704038 71704038 G A THSD4 Missense_Mutation p.R343H 0.20 deleterious(0.03) benign(0.006) TCGA-HZ-7919-01 15 83926674 83926674 C T BNC1 Silent p.T835T 0.17 TCGA-HZ-7919-01 15 86212982 86212982 T C AKAP13 Silent p.F1678F 0.17 TCGA-HZ-7919-01 16 30505643 30505643 G A ITGAL Missense_Mutation p.G442R 0.44 tolerated(0.57) benign(0.002) TCGA-HZ-7919-01 16 3452365 3452365 G A ZNF174 Missense_Mutation p.V121M 0.05 deleterious(0) probably_damaging(0.999) TCGA-HZ-7919-01 16 64981819 64981819 C T CDH11 Missense_Mutation p.R693H 0.37 deleterious(0) probably_damaging(0.999) TCGA-HZ-7919-01 16 70415640 70415640 G C ST3GAL2 Missense_Mutation p.I335M 0.35 probably_damaging(0.987) TCGA-HZ-7919-01 16 84120998 84120998 T C MBTPS1 Missense_Mutation p.I367V 0.20 tolerated(0.11) possibly_damaging(0.773) TCGA-HZ-7919-01 16 89838200 89838200 C T FANCA Silent p.V679V 0.42 TCGA-HZ-7919-01 17 19575061 19575061 G T ALDH3A2 Missense_Mutation p.G412V 0.15 deleterious(0) probably_damaging(0.999) TCGA-HZ-7919-01 17 39983731 39983731 C T NT5C3B Missense_Mutation p.D239N 0.15 deleterious(0.04) possibly_damaging(0.55) TCGA-HZ-7919-01 17 74681156 74681156 C G MXRA7 Missense_Mutation p.Q166H 0.24 benign(0.041) TCGA-HZ-7919-01 18 20516852 20516852 C G RBBP8 Missense_Mutation p.S13C 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-HZ-7919-01 18 48604787 48604787 G C SMAD4 Missense_Mutation p.D537H 0.24 deleterious(0) probably_damaging(1) TCGA-HZ-7919-01 19 4364084 4364084 C T SH3GL1 Splice_Site p.X155_splice 0.21 TCGA-HZ-7919-01 19 49000674 49000674 G A LMTK3 Nonsense_Mutation p.Q1247* 0.18 TCGA-HZ-7919-01 19 49129495 49129495 C T SPHK2 Silent p.R129R 0.27 TCGA-HZ-7919-01 1 10425167 10425167 G C KIF1B Missense_Mutation p.R1413T 0.13 deleterious(0) probably_damaging(0.974) TCGA-HZ-7919-01 1 10425187 10425187 G C KIF1B Missense_Mutation p.D1420H 0.15 deleterious(0) probably_damaging(0.998) TCGA-HZ-7919-01 1 10425500 10425500 G A KIF1B Missense_Mutation p.E1470K 0.18 deleterious(0.01) benign(0.107) TCGA-HZ-7919-01 1 11252354 11252354 A G ANGPTL7 Missense_Mutation p.Y135C 0.21 deleterious(0.01) possibly_damaging(0.903) TCGA-HZ-7919-01 1 114340098 114340098 G C RSBN1 Missense_Mutation p.L422V 0.15 deleterious(0) probably_damaging(0.996) TCGA-HZ-7919-01 1 201966564 201966564 C T RNPEP Silent p.I324I 0.17 TCGA-HZ-7919-01 1 201966573 201966573 C T RNPEP Silent p.I327I 0.16 TCGA-HZ-7919-01 1 203276480 203276480 T G BTG2 Missense_Mutation p.S131A 0.23 tolerated(0.28) benign(0.001) TCGA-HZ-7919-01 1 220752846 220752846 A C MARK1 Missense_Mutation p.K68Q 0.26 deleterious(0) probably_damaging(0.954) TCGA-HZ-7919-01 20 19981313 19981313 C G RIN2 Silent p.L856L 0.16 TCGA-HZ-7919-01 20 42694633 42694633 C T TOX2 Silent p.G414G 0.16 TCGA-HZ-7919-01 21 47545202 47545202 T A COL6A2 Missense_Mutation p.V598E 0.03 deleterious(0) possibly_damaging(0.833) TCGA-HZ-7919-01 22 32464533 32464533 C A SLC5A1 Silent p.I141I 0.19 TCGA-HZ-7919-01 22 36678521 36678521 G T MYH9 3'UTR 0.26 TCGA-HZ-7919-01 2 11742547 11742547 C T GREB1 Missense_Mutation p.H849Y 0.37 tolerated(0.05) benign(0.225) TCGA-HZ-7919-01 2 228552007 228552007 T C SLC19A3 3'UTR 0.42 TCGA-HZ-7919-01 2 43965587 43965587 G C PLEKHH2 Missense_Mutation p.Q1017H 0.38 deleterious(0) possibly_damaging(0.808) TCGA-HZ-7919-01 3 15718557 15718557 C T ANKRD28 Missense_Mutation p.E903K 0.19 deleterious(0.01) possibly_damaging(0.903) TCGA-HZ-7919-01 3 196311085 196311085 G A FBXO45 Missense_Mutation p.A253T 0.21 deleterious(0) probably_damaging(1) TCGA-HZ-7919-01 4 74919842 74919842 G C PPBPP2 RNA 0.14 TCGA-HZ-7919-01 4 9998478 9998478 T C SLC2A9 Missense_Mutation p.T113A 0.21 deleterious(0) possibly_damaging(0.734) TCGA-HZ-7919-01 5 140754472 140754472 C T PCDHGA6 Silent p.H274H 0.18 TCGA-HZ-7919-01 5 66461307 66461307 G C MAST4 Missense_Mutation p.E2100D 0.20 benign(0.002) TCGA-HZ-7919-01 6 132859638 132859638 G C TAAR9 Silent p.L70L 0.24 TCGA-HZ-7919-01 6 18258216 18258216 G C DEK Missense_Mutation p.L109V 0.20 deleterious(0) probably_damaging(0.986) TCGA-HZ-7919-01 6 2624100 2624100 G C C6orf195 5'UTR 0.25 TCGA-HZ-7919-01 6 29364423 29364423 G A OR12D2 5'UTR 0.09 TCGA-HZ-7919-01 6 42541728 42541728 G C UBR2 Missense_Mutation p.C112S 0.04 deleterious(0) probably_damaging(0.986) TCGA-HZ-7919-01 7 100414848 100414848 G A EPHB4 Silent p.F518F 0.25 TCGA-HZ-7919-01 7 38725545 38725545 G A FAM183B Missense_Mutation p.R21W 0.25 tolerated(0.19) benign(0.034) TCGA-HZ-7919-01 7 39046433 39046433 C G POU6F2 5'UTR 0.18 TCGA-HZ-7919-01 7 47869028 47869028 C G PKD1L1 Missense_Mutation p.E2244Q 0.22 deleterious(0.01) benign(0.132) TCGA-HZ-7919-01 7 73114652 73114652 T G STX1A 3'UTR 0.42 TCGA-HZ-7919-01 7 99277588 99277588 T G CYP3A5 5'UTR 0.23 TCGA-HZ-7919-01 9 131386635 131386635 C G SPTAN1 Nonsense_Mutation p.S1954* 0.21 TCGA-HZ-7919-01 9 131513437 131513437 G A ZER1 Silent p.R383R 0.21 TCGA-HZ-7919-01 9 138393703 138393703 G C MRPS2 Missense_Mutation p.K61N 0.18 deleterious(0.04) benign(0.027) TCGA-HZ-7919-01 X 1508186 1508186 C T SLC25A6 Silent p.Q182Q 0.18 TCGA-HZ-7919-01 X 153583275 153583275 T C FLNA Missense_Mutation p.Y1712C 0.25 deleterious(0) probably_damaging(0.992) TCGA-HZ-7919-01 X 27766766 27766766 G A DCAF8L2 Missense_Mutation p.R585H 0.09 tolerated(0.72) benign(0.005) TCGA-HZ-7919-01 X 79985487 79985487 G A BRWD3 Missense_Mutation p.T387M 0.19 deleterious(0) probably_damaging(0.967) TCGA-HZ-7920-01 1 142803673 142803673 C T RP11-423O2.5 RNA 0.08 TCGA-HZ-7920-01 21 46058142 46058142 C T KRTAP10-10 3'UTR 0.11 TCGA-HZ-7920-01 22 40820376 40820376 A C MKL1 Missense_Mutation p.V104G 0.04 deleterious(0) probably_damaging(0.966) TCGA-HZ-7922-01 10 96269882 96269882 A G TBC1D12 Silent p.E545E 0.17 TCGA-HZ-7922-01 11 123810383 123810383 T C OR4D5 Silent p.V20V 0.08 TCGA-HZ-7922-01 12 25380275 25380275 T A KRAS Missense_Mutation p.Q61H 0.39 deleterious(0) benign(0.371) TCGA-HZ-7922-01 12 46231283 46231283 A G ARID2 Missense_Mutation p.M375V 0.21 deleterious(0.03) probably_damaging(0.958) TCGA-HZ-7922-01 12 4920010 4920010 C T KCNA6 Missense_Mutation p.T268M 0.03 deleterious(0) probably_damaging(1) TCGA-HZ-7922-01 12 53459657 53459657 C T SPRYD3 Missense_Mutation p.G430R 0.23 tolerated(0.06) probably_damaging(0.992) TCGA-HZ-7922-01 12 70209146 70209146 G A RAB3IP Missense_Mutation p.D451N 0.19 tolerated(0.08) benign(0.434) TCGA-HZ-7922-01 13 28001293 28001293 G T GTF3A Missense_Mutation p.R89L 0.27 deleterious(0) probably_damaging(0.999) TCGA-HZ-7922-01 13 67802227 67802227 C A PCDH9 Missense_Mutation p.V116L 0.08 tolerated(0.06) possibly_damaging(0.626) TCGA-HZ-7922-01 13 67802228 67802228 C A PCDH9 Silent p.V115V 0.08 TCGA-HZ-7922-01 14 60945081 60945081 C T C14orf39 Missense_Mutation p.R87H 0.20 tolerated(1) benign(0) TCGA-HZ-7922-01 15 57823890 57823890 C - CGNL1 Frame_Shift_Del p.D1068Efs*34 0.22 TCGA-HZ-7922-01 16 30389182 30389182 C - MYLPF Frame_Shift_Del p.Y158Tfs*35 0.15 TCGA-HZ-7922-01 16 4702743 4702743 G T MGRN1 Nonsense_Mutation p.E121* 0.31 TCGA-HZ-7922-01 16 67682073 67682073 C T RLTPR Missense_Mutation p.A397V 0.36 tolerated_low_confidence(0.27) benign(0) TCGA-HZ-7922-01 16 67961230 67961230 C G PSKH1 Silent p.P320P 0.34 TCGA-HZ-7922-01 17 16089977 16089977 A G NCOR1 Missense_Mutation p.S45P 0.13 benign(0.424) TCGA-HZ-7922-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.39 TCGA-HZ-7922-01 19 13397337 13397338 - G CACNA1A Frame_Shift_Ins p.L1178Pfs*38 0.33 TCGA-HZ-7922-01 19 14034358 14034358 C T CC2D1A Intron 0.35 TCGA-HZ-7922-01 19 36633201 36633201 G A CAPNS1 Splice_Site p.X70_splice 0.27 TCGA-HZ-7922-01 19 40368392 40368392 T C FCGBP Missense_Mutation p.D4319G 0.06 probably_damaging(0.963) TCGA-HZ-7922-01 19 44006338 44006338 T C PHLDB3 Missense_Mutation p.Q104R 0.21 tolerated(0.07) benign(0.004) TCGA-HZ-7922-01 19 50504080 50504080 T C VRK3 Silent p.S193S 0.13 TCGA-HZ-7922-01 19 51322554 51322554 A T KLK1 Missense_Mutation p.S229T 0.41 deleterious(0) probably_damaging(0.984) TCGA-HZ-7922-01 19 51322555 51322555 T G KLK1 Silent p.T228T 0.40 TCGA-HZ-7922-01 19 56369355 56369355 C T NLRP4 Missense_Mutation p.T199M 0.21 tolerated(0.06) benign(0.18) TCGA-HZ-7922-01 1 100843110 100843110 C A CDC14A Missense_Mutation p.A50E 0.12 deleterious(0.05) benign(0.167) TCGA-HZ-7922-01 1 196227479 196227479 C T KCNT2 Missense_Mutation p.R1019Q 0.28 deleterious(0.02) possibly_damaging(0.844) TCGA-HZ-7922-01 1 248039221 248039221 C T TRIM58 Silent p.P297P 0.27 TCGA-HZ-7922-01 1 55138848 55138848 A T MROH7 Missense_Mutation p.S562C 0.08 deleterious(0) probably_damaging(0.957) TCGA-HZ-7922-01 1 75037471 75037471 G A C1orf173 Missense_Mutation p.A1308V 0.14 tolerated(1) benign(0) TCGA-HZ-7922-01 1 79392719 79392719 G T ELTD1 Missense_Mutation p.S312Y 0.13 deleterious(0.01) possibly_damaging(0.89) TCGA-HZ-7922-01 21 47538549 47538549 C T COL6A2 Missense_Mutation p.R380C 0.33 deleterious(0) probably_damaging(0.999) TCGA-HZ-7922-01 22 29886317 29886317 G A NEFH Silent p.E896E 0.29 TCGA-HZ-7922-01 2 179579858 179579858 G A TTN Silent p.S8685S 0.34 TCGA-HZ-7922-01 2 215835096 215835096 G A ABCA12 Missense_Mutation p.P1864L 0.17 deleterious(0) probably_damaging(0.996) TCGA-HZ-7922-01 2 71795377 71795377 G A DYSF Missense_Mutation p.V925I 0.15 tolerated(0.25) benign(0.017) TCGA-HZ-7922-01 3 119327676 119327676 C T PLA1A Missense_Mutation p.T112M 0.24 tolerated(0.1) benign(0.014) TCGA-HZ-7922-01 3 48491541 48491541 G A ATRIP Missense_Mutation p.V116I 0.40 tolerated(0.1) benign(0.002) TCGA-HZ-7922-01 3 78734918 78734918 C A ROBO1 Missense_Mutation p.K440N 0.29 deleterious(0) probably_damaging(0.998) TCGA-HZ-7922-01 4 1283769 1283769 A G MAEA Missense_Mutation p.K23R 0.12 deleterious(0.03) benign(0.048) TCGA-HZ-7922-01 4 151791686 151791686 G C LRBA Missense_Mutation p.Q814E 0.37 tolerated(0.87) possibly_damaging(0.766) TCGA-HZ-7922-01 5 32126388 32126388 G A GOLPH3 Missense_Mutation p.P276L 0.28 tolerated(0.38) benign(0.117) TCGA-HZ-7922-01 7 128477594 128477594 A G FLNC Missense_Mutation p.Y281C 0.39 deleterious(0) probably_damaging(0.999) TCGA-HZ-7922-01 7 5410273 5410273 C T TNRC18 Missense_Mutation p.G1318S 0.37 benign(0.011) TCGA-HZ-7922-01 8 97156945 97156945 G A GDF6 Missense_Mutation p.T405M 0.15 deleterious(0) probably_damaging(1) TCGA-HZ-7922-01 9 130507114 130507114 G A SH2D3C Missense_Mutation p.A510V 0.35 tolerated(0.14) benign(0.006) TCGA-HZ-7922-01 X 112048283 112048283 C T AMOT Silent p.A556A 0.38 TCGA-HZ-7922-01 X 15582310 15582310 G A ACE2 Missense_Mutation p.R716C 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.677) TCGA-HZ-7922-01 X 70389792 70389792 C T NLGN3 Missense_Mutation p.R798C 0.28 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-HZ-7924-01 19 619645 619645 G A POLRMT Missense_Mutation p.R1003C 0.03 deleterious(0) benign(0.289) TCGA-HZ-7925-01 11 4843497 4843497 T G OR51F2 Missense_Mutation p.F294L 0.05 deleterious(0) probably_damaging(0.996) TCGA-HZ-7925-01 11 89891358 89891358 G A NAALAD2 Missense_Mutation p.R281Q 0.10 tolerated(0.18) benign(0) TCGA-HZ-7925-01 12 110397662 110397662 C T GIT2 Silent p.S363S 0.08 TCGA-HZ-7925-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.10 deleterious(0) possibly_damaging(0.479) TCGA-HZ-7925-01 12 80632702 80632702 G T OTOGL Missense_Mutation p.V288L 0.14 tolerated(0.68) benign(0.01) TCGA-HZ-7925-01 14 25043947 25043947 C T CTSG Silent p.A91A 0.22 TCGA-HZ-7925-01 14 59946013 59946013 C T L3HYPDH Missense_Mutation p.G189S 0.16 deleterious(0) probably_damaging(1) TCGA-HZ-7925-01 15 62993388 62993388 G A TLN2 Silent p.T557T 0.15 TCGA-HZ-7925-01 15 79296394 79296394 C T RASGRF1 Silent p.S749S 0.11 TCGA-HZ-7925-01 17 34797422 34797422 G A TBC1D3G 3'UTR 0.07 TCGA-HZ-7925-01 17 44115873 44115906 GGTGTCCGGCCAACCCCACACAGGTACTTACCGA - KANSL1 Splice_Site p.X847_splice 0.13 TCGA-HZ-7925-01 17 56356676 56356676 G A MPO Silent p.N220N 0.17 TCGA-HZ-7925-01 17 7578525 7578525 G T TP53 Nonsense_Mutation p.C135* 0.12 TCGA-HZ-7925-01 18 48584825 48584826 - TG SMAD4 Frame_Shift_Ins 0.21 TCGA-HZ-7925-01 19 39787112 39787112 C T IFNL1 Silent p.A17A 0.11 TCGA-HZ-7925-01 19 51133283 51133283 G A SYT3 Silent p.L274L 0.12 TCGA-HZ-7925-01 1 152681682 152681683 - AGCTCTGGGGGCTGCTGT LCE4A In_Frame_Ins p.S44delinsRALGAAV 0.09 TCGA-HZ-7925-01 1 173835779 173835780 - T ZBTB37 5'Flank 0.09 TCGA-HZ-7925-01 1 203798664 203798664 G T ZC3H11A Missense_Mutation p.Q128H 0.09 deleterious(0) probably_damaging(0.993) TCGA-HZ-7925-01 1 211256132 211256132 C T KCNH1 Missense_Mutation p.R183H 0.23 tolerated(0.17) benign(0.104) TCGA-HZ-7925-01 1 216498693 216498693 T C USH2A Missense_Mutation p.N366S 0.11 benign(0.023) TCGA-HZ-7925-01 1 231830345 231830345 G A DISC1 Missense_Mutation p.A281T 0.08 tolerated(0.74) benign(0.074) TCGA-HZ-7925-01 2 133542683 133542683 G A NCKAP5 Silent p.G567G 0.13 TCGA-HZ-7925-01 2 179621444 179621444 T C TTN Missense_Mutation p.T3587A 0.11 TCGA-HZ-7925-01 2 73302662 73302662 C G RAB11FIP5 Missense_Mutation p.G650A 0.07 tolerated_low_confidence(0.26) benign(0) TCGA-HZ-7925-01 5 115327959 115327959 C T AQPEP Silent p.H415H 0.14 TCGA-HZ-7925-01 5 140222482 140222482 G A PCDHA8 Missense_Mutation p.E526K 0.11 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-HZ-7925-01 5 173337529 173337529 C T CPEB4 Missense_Mutation p.R377C 0.15 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-HZ-7925-01 6 13230385 13230385 C T PHACTR1 Missense_Mutation p.R451W 0.12 deleterious(0) probably_damaging(0.942) TCGA-HZ-7925-01 6 32046935 32046935 C T RNA5SP206 5'Flank 0.10 TCGA-HZ-7925-01 7 100320819 100320819 T C EPO 3'UTR 0.51 TCGA-HZ-7925-01 7 27148069 27148069 C T HOXA3 Missense_Mutation p.R266H 0.11 tolerated(0.17) benign(0.363) TCGA-HZ-7925-01 7 38393523 38393523 G A TRGV4 Silent p.G49G 0.15 TCGA-HZ-7925-01 9 77423011 77423011 C T TRPM6 Missense_Mutation p.R526H 0.11 deleterious(0.01) possibly_damaging(0.902) TCGA-HZ-7925-01 X 153135631 153135631 G A L1CAM Nonsense_Mutation p.Q291* 0.25 TCGA-HZ-7926-01 10 26243817 26243817 G T MYO3A Missense_Mutation p.E61D 0.09 deleterious(0.04) probably_damaging(0.967) TCGA-HZ-7926-01 11 5529285 5529285 G T UBQLN3 Missense_Mutation p.Q502K 0.06 deleterious(0.04) benign(0.021) TCGA-HZ-7926-01 11 59596985 59596985 T C GIF Missense_Mutation p.H409R 0.06 tolerated(0.1) benign(0.388) TCGA-HZ-7926-01 12 105150940 105150940 G A CHST11 Missense_Mutation p.G140R 0.06 deleterious(0) probably_damaging(0.991) TCGA-HZ-7926-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.12 deleterious(0) benign(0.361) TCGA-HZ-7926-01 13 103514870 103514870 C T BIVM-ERCC5 Silent p.H883H 0.06 TCGA-HZ-7926-01 13 25671664 25671664 A C PABPC3 Missense_Mutation p.N443T 0.06 tolerated(0.46) benign(0.005) TCGA-HZ-7926-01 13 28622533 28622533 C T FLT3 Missense_Mutation p.D362N 0.12 tolerated(0.17) benign(0.368) TCGA-HZ-7926-01 14 105346747 105346747 C T CEP170B Missense_Mutation p.R153W 0.14 deleterious(0) probably_damaging(0.994) TCGA-HZ-7926-01 14 19988368 19988368 G A POTEM 3'UTR 0.10 TCGA-HZ-7926-01 14 51094836 51094836 C T ATL1 Nonsense_Mutation p.R403* 0.06 TCGA-HZ-7926-01 14 90650874 90650874 G T KCNK13 Nonsense_Mutation p.E252* 0.06 TCGA-HZ-7926-01 15 75091650 75091650 C T CSK Missense_Mutation p.R94W 0.06 deleterious(0.01) possibly_damaging(0.898) TCGA-HZ-7926-01 16 3367798 3367798 A G ZNF75A Missense_Mutation p.T274A 0.05 deleterious(0.04) benign(0.019) TCGA-HZ-7926-01 17 37565585 37565585 T G MED1 Missense_Mutation p.L963F 0.05 tolerated_low_confidence(0.06) probably_damaging(0.943) TCGA-HZ-7926-01 17 7577035 7577036 - G TP53 Frame_Shift_Ins p.G302Rfs*4 0.19 TCGA-HZ-7926-01 19 13227177 13227177 G A TRMT1 Missense_Mutation p.R13C 0.05 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-HZ-7926-01 19 48537514 48537514 G A CABP5 Missense_Mutation p.R152W 0.10 deleterious(0) benign(0.25) TCGA-HZ-7926-01 19 58549468 58549468 C T ZSCAN1 Silent p.G88G 0.07 TCGA-HZ-7926-01 19 7833838 7833838 C A CLEC4M Silent p.I388I 0.06 TCGA-HZ-7926-01 1 155160807 155160807 G A MUC1 Silent p.S240S 0.12 TCGA-HZ-7926-01 1 158435756 158435756 C T OR10K1 Silent p.L135L 0.11 TCGA-HZ-7926-01 1 161198886 161198886 G A TOMM40L 3'UTR 0.03 TCGA-HZ-7926-01 1 162688902 162688902 A G DDR2 Missense_Mutation p.I17V 0.10 tolerated(0.52) unknown(0) TCGA-HZ-7926-01 1 222835427 222835427 C T MIA3 Nonsense_Mutation p.R1715* 0.12 TCGA-HZ-7926-01 1 247592989 247592989 G A NLRP3 Silent p.L753L 0.05 TCGA-HZ-7926-01 1 3415047 3415047 G A MEGF6 Silent p.D1080D 0.09 TCGA-HZ-7926-01 1 93672842 93672842 G T CCDC18 Nonsense_Mutation p.E420* 0.06 TCGA-HZ-7926-01 20 30432695 30432695 C T FOXS1 Silent p.A217A 0.11 TCGA-HZ-7926-01 20 43926857 43926857 C T MATN4 Missense_Mutation p.R460H 0.08 probably_damaging(0.999) TCGA-HZ-7926-01 2 210559008 210559008 C T MAP2 Missense_Mutation p.P705L 0.11 deleterious(0) probably_damaging(1) TCGA-HZ-7926-01 2 212589903 212589903 A G ERBB4 Silent p.C213C 0.04 TCGA-HZ-7926-01 2 220420834 220420834 C T OBSL1 Missense_Mutation p.R1506H 0.11 tolerated(0.41) possibly_damaging(0.903) TCGA-HZ-7926-01 2 64117306 64117306 A G UGP2 Missense_Mutation p.N469S 0.10 tolerated(0.11) benign(0.363) TCGA-HZ-7926-01 3 48726088 48726088 C T IP6K2 Missense_Mutation p.R300H 0.04 deleterious(0) probably_damaging(0.999) TCGA-HZ-7926-01 4 100512445 100512445 G C MTTP Silent p.V185V 0.11 TCGA-HZ-7926-01 4 42627669 42627669 C T ATP8A1 Missense_Mutation p.A76T 0.07 tolerated(0.15) probably_damaging(0.989) TCGA-HZ-7926-01 4 84353360 84353360 C T HELQ Silent p.Q703Q 0.05 TCGA-HZ-7926-01 5 101576431 101576431 G A SLCO4C1 Nonsense_Mutation p.R623* 0.12 TCGA-HZ-7926-01 5 101834438 101834438 T G SLCO6A1 Silent p.G37G 0.11 TCGA-HZ-7926-01 5 140482066 140482066 G A PCDHB3 Silent p.E611E 0.04 TCGA-HZ-7926-01 5 24535262 24535262 G A CDH10 Missense_Mutation p.T258M 0.05 deleterious(0.04) probably_damaging(0.998) TCGA-HZ-7926-01 5 55059848 55059848 C G DDX4 Nonsense_Mutation p.S97* 0.04 TCGA-HZ-7926-01 5 82835841 82835841 G A VCAN Missense_Mutation p.G2340E 0.11 tolerated(0.61) benign(0.028) TCGA-HZ-7926-01 6 100061823 100061823 C T PRDM13 Missense_Mutation p.P438S 0.08 tolerated_low_confidence(0.18) benign(0.11) TCGA-HZ-7926-01 6 28227796 28227797 - T NKAPL Frame_Shift_Ins p.D217* 0.08 TCGA-HZ-7926-01 6 41888809 41888809 T A MED20 5'UTR 0.09 TCGA-HZ-7926-01 6 43155033 43155033 G A CUL9 Silent p.P479P 0.06 TCGA-HZ-7926-01 7 107643416 107643416 T C LAMB1 Intron 0.13 TCGA-HZ-7926-01 7 116557995 116557995 C T CAPZA2 3'UTR 0.14 TCGA-HZ-7926-01 9 140135771 140135771 T G TUBB4B 5'UTR 0.10 TCGA-HZ-7926-01 9 21971003 21971004 - A CDKN2A Frame_Shift_Ins p.E119* 0.16 TCGA-HZ-7926-01 X 9907312 9907312 C T SHROOM2 Missense_Mutation p.A1406V 0.14 deleterious(0.01) probably_damaging(0.992) TCGA-HZ-8001-01 10 71683572 71683572 C T COL13A1 Silent p.V404V 0.06 TCGA-HZ-8001-01 11 17415843 17415843 G A ABCC8 Silent p.D1505D 0.04 TCGA-HZ-8001-01 11 55595169 55595169 C A OR5L2 Missense_Mutation p.H159N 0.08 deleterious(0.04) probably_damaging(0.999) TCGA-HZ-8001-01 11 613476 613476 C T IRF7 Missense_Mutation p.A336T 0.05 tolerated(0.16) possibly_damaging(0.548) TCGA-HZ-8001-01 12 10569320 10569320 C T KLRC3 Missense_Mutation p.R178H 0.08 deleterious(0.04) possibly_damaging(0.521) TCGA-HZ-8001-01 12 124352474 124352474 G T DNAH10 Missense_Mutation p.D2325Y 0.05 possibly_damaging(0.863) TCGA-HZ-8001-01 12 53573662 53573662 A C CSAD 5'UTR 0.07 TCGA-HZ-8001-01 12 56705037 56705037 G A CNPY2 Silent p.G122G 0.06 TCGA-HZ-8001-01 13 103718456 103718456 G A SLC10A2 Silent p.S48S 0.04 TCGA-HZ-8001-01 14 105716868 105716868 C T BTBD6 Silent p.S439S 0.09 TCGA-HZ-8001-01 14 22676006 22676006 C A TRAV34 Silent p.I106I 0.09 TCGA-HZ-8001-01 14 47343307 47343307 C T MDGA2 Missense_Mutation p.R845K 0.04 tolerated(0.05) probably_damaging(0.987) TCGA-HZ-8001-01 14 71197063 71197063 G A MAP3K9 3'UTR 0.09 TCGA-HZ-8001-01 14 75537764 75537764 T G ZC2HC1C Missense_Mutation p.V163G 0.08 tolerated(0.22) benign(0.02) TCGA-HZ-8001-01 16 22926868 22926868 C A HS3ST2 Missense_Mutation p.D363E 0.04 deleterious(0) benign(0.235) TCGA-HZ-8001-01 16 50711341 50711341 C T SNX20 Missense_Mutation p.D33N 0.09 tolerated(0.08) benign(0.232) TCGA-HZ-8001-01 17 36499508 36499508 C T GPR179 Silent p.G55G 0.03 TCGA-HZ-8001-01 17 38792702 38792702 C T SMARCE1 Missense_Mutation p.R105Q 0.08 tolerated(0.06) possibly_damaging(0.553) TCGA-HZ-8001-01 17 57093064 57093064 C T TRIM37 Missense_Mutation p.R828Q 0.04 tolerated_low_confidence(0.12) benign(0.002) TCGA-HZ-8001-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.09 deleterious(0) probably_damaging(1) TCGA-HZ-8001-01 19 34868485 34868485 C T GPI Intron 0.05 TCGA-HZ-8001-01 19 56545008 56545008 A C NLRP5 Missense_Mutation p.K850Q 0.08 tolerated(0.24) benign(0.111) TCGA-HZ-8001-01 1 182992997 182992997 G T LAMC1 Missense_Mutation p.R49L 0.08 deleterious(0) probably_damaging(0.995) TCGA-HZ-8001-01 1 204588995 204588995 C T LRRN2 Silent p.T42T 0.05 TCGA-HZ-8001-01 1 228467880 228467880 C T OBSCN Missense_Mutation p.A2984V 0.09 benign(0.105) TCGA-HZ-8001-01 1 27106228 27106228 C T ARID1A Nonsense_Mutation p.Q1947* 0.04 TCGA-HZ-8001-01 1 32222194 32222194 G C BAI2 Missense_Mutation p.R82G 0.09 deleterious(0) possibly_damaging(0.664) TCGA-HZ-8001-01 1 32669888 32669888 G A CCDC28B Missense_Mutation p.D145N 0.05 tolerated(0.35) benign(0.012) TCGA-HZ-8001-01 1 47123857 47123857 A T ATPAF1 Missense_Mutation p.L167H 0.08 deleterious(0) probably_damaging(1) TCGA-HZ-8001-01 20 29976959 29976959 G A DEFB119 Missense_Mutation p.R46C 0.07 deleterious(0) probably_damaging(0.968) TCGA-HZ-8001-01 20 48130848 48130848 C T PTGIS Missense_Mutation p.E314K 0.10 tolerated(0.16) benign(0.095) TCGA-HZ-8001-01 21 28338459 28338459 G A ADAMTS5 Silent p.G84G 0.04 TCGA-HZ-8001-01 2 179574354 179574354 G T TTN Nonsense_Mutation p.Y9564* 0.07 TCGA-HZ-8001-01 2 230660000 230660000 G A TRIP12 Missense_Mutation p.A1213V 0.07 tolerated(0.18) benign(0.051) TCGA-HZ-8001-01 2 232672287 232672288 - A COPS7B Frame_Shift_Ins p.H243Qfs*3 0.13 TCGA-HZ-8001-01 2 31178784 31178784 G A GALNT14 Missense_Mutation p.R181W 0.09 deleterious(0) probably_damaging(1) TCGA-HZ-8001-01 2 74135852 74135852 C T ACTG2 Missense_Mutation p.P103L 0.03 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-HZ-8001-01 3 138738751 138738751 C T PRR23B Silent p.P251P 0.06 TCGA-HZ-8001-01 3 142185227 142185227 T G ATR Missense_Mutation p.N2279T 0.10 tolerated(0.39) benign(0.367) TCGA-HZ-8001-01 3 151129293 151129293 G A MED12L Silent p.Q2011Q 0.08 TCGA-HZ-8001-01 4 154709592 154709592 G A SFRP2 Silent p.F132F 0.04 TCGA-HZ-8001-01 4 37863199 37863199 C A PGM2 Missense_Mutation p.P602Q 0.08 deleterious(0) probably_damaging(0.996) TCGA-HZ-8001-01 4 38830874 38830874 A G TLR6 Missense_Mutation p.F74S 0.07 tolerated(0.85) benign(0.001) TCGA-HZ-8001-01 4 435583 435583 T G ZNF721 Missense_Mutation p.K891N 0.04 deleterious(0.01) probably_damaging(0.992) TCGA-HZ-8001-01 4 71024100 71024100 T C C4orf40 Missense_Mutation p.I44T 0.06 tolerated(0.27) benign(0.35) TCGA-HZ-8001-01 4 71510452 71510452 A G ENAM Silent p.E1103E 0.09 TCGA-HZ-8001-01 4 84375061 84375061 T C HELQ Missense_Mutation p.D112G 0.05 deleterious_low_confidence(0.02) benign(0.113) TCGA-HZ-8001-01 5 127866347 127866347 C T FBN2 Missense_Mutation p.R126H 0.08 deleterious(0.01) benign(0) TCGA-HZ-8001-01 6 100896021 100896021 C T SIM1 Splice_Site p.X284_splice 0.05 TCGA-HZ-8001-01 6 37631799 37631799 G A MDGA1 Missense_Mutation p.R51W 0.10 deleterious(0) probably_damaging(0.998) TCGA-HZ-8001-01 7 135258466 135258466 G T NUP205 Missense_Mutation p.G79V 0.03 deleterious(0) probably_damaging(1) TCGA-HZ-8001-01 8 64099487 64099487 A - YTHDF3 Frame_Shift_Del p.L306* 0.08 TCGA-HZ-8001-01 9 126129592 126129592 G A CRB2 Missense_Mutation p.R299H 0.05 tolerated(0.15) unknown(0) TCGA-HZ-8001-01 9 130442473 130442473 C G STXBP1 Missense_Mutation p.P500R 0.08 deleterious(0) probably_damaging(0.999) TCGA-HZ-8001-01 9 36058869 36058869 C T RECK Nonsense_Mutation p.R69* 0.13 TCGA-HZ-8001-01 9 8492935 8492935 G A PTPRD Silent p.L798L 0.11 TCGA-HZ-8001-01 X 105153065 105153065 C T NRK Missense_Mutation p.L479F 0.23 tolerated(0.32) benign(0.009) TCGA-HZ-8001-01 X 107037529 107037529 C T NCBP2L Missense_Mutation p.R27C 0.23 deleterious(0.01) benign(0.026) TCGA-HZ-8001-01 X 1584907 1584907 G A P2RY8 Missense_Mutation p.T182M 0.06 tolerated(0.06) benign(0.084) TCGA-HZ-8002-01 10 1405435 1405435 C T ADARB2 Missense_Mutation p.G289R 0.09 deleterious(0) probably_damaging(1) TCGA-HZ-8002-01 10 45488853 45488853 G A RASSF4 3'UTR 0.10 TCGA-HZ-8002-01 11 47296667 47296667 C T MADD Missense_Mutation p.R206C 0.02 deleterious(0) probably_damaging(0.999) TCGA-HZ-8002-01 11 67220263 67220263 C A CABP4 5'Flank 0.07 TCGA-HZ-8002-01 12 126138387 126138387 G A TMEM132B Missense_Mutation p.E790K 0.04 tolerated(0.08) benign(0.115) TCGA-HZ-8002-01 12 5021748 5021748 C T KCNA1 Silent p.L402L 0.05 TCGA-HZ-8002-01 12 56825369 56825369 C T TIMELESS Missense_Mutation p.G236E 0.05 tolerated(0.93) benign(0.027) TCGA-HZ-8002-01 13 111870079 111870079 C T ARHGEF7 Silent p.F195F 0.03 TCGA-HZ-8002-01 17 14205111 14205111 G A HS3ST3B1 Silent p.A92A 0.07 TCGA-HZ-8002-01 17 73624802 73624802 G A RECQL5 Missense_Mutation p.P844S 0.03 tolerated(0.74) benign(0.011) TCGA-HZ-8002-01 18 31538336 31538336 C G NOL4 Missense_Mutation p.S368T 0.03 tolerated(0.28) benign(0.264) TCGA-HZ-8002-01 1 154920764 154920764 C T PBXIP1 Missense_Mutation p.R163Q 0.05 tolerated(0.26) benign(0.078) TCGA-HZ-8002-01 1 159888604 159888604 G A TAGLN2 Missense_Mutation p.R196C 0.02 tolerated(0.07) possibly_damaging(0.545) TCGA-HZ-8002-01 1 99772446 99772446 C T LPPR4 Silent p.R724R 0.05 TCGA-HZ-8002-01 21 44479374 44479374 G A CBS Silent p.G395G 0.03 TCGA-HZ-8002-01 2 189927907 189927907 T A COL5A2 Missense_Mutation p.K620N 0.03 probably_damaging(0.983) TCGA-HZ-8002-01 5 31526591 31526591 G A DROSHA Missense_Mutation p.S150F 0.04 tolerated_low_confidence(0.19) benign(0.193) TCGA-HZ-8002-01 8 110984838 110984838 C T KCNV1 Missense_Mutation p.V214I 0.03 tolerated(1) benign(0) TCGA-HZ-8002-01 8 77766675 77766675 A G ZFHX4 Silent p.E2506E 0.03 TCGA-HZ-8002-01 9 34976561 34976561 C T KIAA1045 Missense_Mutation p.R225C 0.06 deleterious(0.02) probably_damaging(0.97) TCGA-HZ-8002-01 X 38146147 38146147 C T RPGR Nonsense_Mutation p.W702* 0.06 TCGA-HZ-8003-01 10 18087580 18087580 C A TMEM236 3'UTR 0.07 TCGA-HZ-8003-01 11 123886737 123886737 T C OR10G4 Silent p.S152S 0.03 TCGA-HZ-8003-01 12 113303278 113303278 G A RPH3A Missense_Mutation p.R97H 0.05 tolerated(0.09) possibly_damaging(0.722) TCGA-HZ-8003-01 14 21680019 21680019 G T HNRNPC Missense_Mutation p.S209Y 0.02 tolerated(0.28) benign(0.055) TCGA-HZ-8003-01 14 64580216 64580216 A G SYNE2 Missense_Mutation p.N4256S 0.05 benign(0.04) TCGA-HZ-8003-01 17 40262918 40262918 G A DHX58 Silent p.I128I 0.03 TCGA-HZ-8003-01 19 2110781 2110781 G A AP3D1 Missense_Mutation p.L1034F 0.04 deleterious(0.03) benign(0.001) TCGA-HZ-8003-01 1 145440118 145440118 T A TXNIP Silent p.I184I 0.04 TCGA-HZ-8003-01 1 158631116 158631116 G C SPTA1 Missense_Mutation p.Q850E 0.02 tolerated(0.43) benign(0.257) TCGA-HZ-8003-01 1 85279808 85279808 G A LPAR3 Silent p.L261L 0.03 TCGA-HZ-8003-01 22 50664531 50664531 T C TUBGCP6 Missense_Mutation p.D594G 0.03 deleterious(0) benign(0.131) TCGA-HZ-8003-01 2 74474203 74474203 G A SLC4A5 Silent p.F673F 0.04 TCGA-HZ-8003-01 3 129214429 129214429 C T IFT122 Silent p.L780L 0.03 TCGA-HZ-8003-01 4 2951988 2951988 C T NOP14 Intron 0.05 TCGA-HZ-8003-01 5 33947401 33947401 G A SLC45A2 Missense_Mutation p.T412M 0.04 deleterious(0) probably_damaging(0.996) TCGA-HZ-8003-01 6 158924700 158924700 G C TULP4 Missense_Mutation p.K1335N 0.03 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-HZ-8003-01 6 159197482 159197482 A G EZR Silent p.N251N 0.03 TCGA-HZ-8003-01 7 135662042 135662042 T C MTPN 5'UTR 0.50 TCGA-HZ-8003-01 7 142124487 142144004 7:142124487-142144004 - TRBV5-6 large deletion 0.27 TCGA-HZ-8003-01 8 116430660 116430660 A T TRPS1 Silent p.V907V 0.03 TCGA-HZ-8003-01 X 135313711 135313711 C T MAP7D3 Missense_Mutation p.A469T 0.03 tolerated(0.56) benign(0.012) TCGA-HZ-8005-01 10 102249858 102249858 G A SEC31B Missense_Mutation p.P958S 0.18 deleterious(0.04) possibly_damaging(0.566) TCGA-HZ-8005-01 10 104163099 104163099 G A PSD Missense_Mutation p.A978V 0.07 tolerated(0.24) benign(0.02) TCGA-HZ-8005-01 10 55566772 55566772 C A PCDH15 Missense_Mutation p.S1538I 0.09 deleterious_low_confidence(0.04) benign(0.171) TCGA-HZ-8005-01 11 111624222 111624222 T C PPP2R1B Missense_Mutation p.K370R 0.16 tolerated(0.19) benign(0.019) TCGA-HZ-8005-01 11 117299205 117299205 C T DSCAML1 Missense_Mutation p.A2061T 0.11 tolerated_low_confidence(1) benign(0.002) TCGA-HZ-8005-01 11 123894473 123894473 G A OR10G9 Missense_Mutation p.V252I 0.17 tolerated(1) benign(0.012) TCGA-HZ-8005-01 11 48328426 48328426 A G OR4S1 Missense_Mutation p.I218V 0.10 tolerated(1) benign(0.002) TCGA-HZ-8005-01 11 55703122 55703122 A T OR5I1 Missense_Mutation p.I252N 0.05 deleterious(0) probably_damaging(0.999) TCGA-HZ-8005-01 11 6265298 6265298 A G CNGA4 Missense_Mutation p.I463V 0.27 tolerated(1) benign(0) TCGA-HZ-8005-01 11 78381519 78381519 C T TENM4 Silent p.T1957T 0.16 TCGA-HZ-8005-01 11 9166560 9166560 A G DENND5A Missense_Mutation p.I1035T 0.15 deleterious(0.02) benign(0.038) TCGA-HZ-8005-01 12 123003584 123003584 A - RSRC2 Intron 0.23 TCGA-HZ-8005-01 12 25380275 25380275 T G KRAS Missense_Mutation p.Q61H 0.27 deleterious(0) benign(0.371) TCGA-HZ-8005-01 12 52779007 52779007 G C KRT84 Silent p.G121G 0.07 TCGA-HZ-8005-01 12 57110765 57110765 G C NACA Intron 0.06 TCGA-HZ-8005-01 14 102552342 102552342 A T HSP90AA1 Silent p.T216T 0.14 TCGA-HZ-8005-01 14 22409639 22409639 G A TRAV9-2 Silent p.T43T 0.21 TCGA-HZ-8005-01 14 59820665 59820665 T C DAAM1 Missense_Mutation p.V790A 0.21 tolerated(0.53) benign(0.241) TCGA-HZ-8005-01 14 69704529 69704529 C T EXD2 Silent p.L510L 0.07 TCGA-HZ-8005-01 14 75136745 75136745 C G AREL1 Missense_Mutation p.E565Q 0.08 deleterious(0) probably_damaging(0.996) TCGA-HZ-8005-01 14 94245551 94245551 G A PRIMA1 Missense_Mutation p.P67L 0.11 deleterious(0) possibly_damaging(0.49) TCGA-HZ-8005-01 16 61935231 61935231 G A CDH8 Silent p.T133T 0.14 TCGA-HZ-8005-01 16 72923765 72923765 G A ZFHX3 Nonsense_Mutation p.Q1105* 0.13 TCGA-HZ-8005-01 16 84812641 84812641 G A USP10 Missense_Mutation p.E784K 0.06 tolerated(0.09) possibly_damaging(0.555) TCGA-HZ-8005-01 16 84812769 84812769 G T USP10 3'UTR 0.14 TCGA-HZ-8005-01 17 10358056 10358056 A G MYH4 Missense_Mutation p.L836P 0.19 deleterious(0) probably_damaging(1) TCGA-HZ-8005-01 17 21318768 21318768 G A KCNJ12 Silent p.T38T 0.07 TCGA-HZ-8005-01 17 40940393 40940393 C T WNK4 Missense_Mutation p.R670C 0.18 deleterious(0) unknown(0) TCGA-HZ-8005-01 17 59760573 59760573 A G BRIP1 3'UTR 0.14 TCGA-HZ-8005-01 17 61561229 61561229 C G ACE Missense_Mutation p.L536V 0.20 tolerated(0.16) possibly_damaging(0.904) TCGA-HZ-8005-01 17 7576852 7576852 C T TP53 Splice_Site p.X331_splice 0.16 TCGA-HZ-8005-01 18 18608802 18608802 A - ROCK1 Frame_Shift_Del p.I383Ffs*13 0.21 TCGA-HZ-8005-01 19 11917498 11917498 G T ZNF491 Nonsense_Mutation p.E244* 0.03 TCGA-HZ-8005-01 19 5219432 5219432 G A PTPRS Missense_Mutation p.P1271L 0.18 tolerated(0.42) benign(0.02) TCGA-HZ-8005-01 19 5978075 5978075 C G RANBP3 Missense_Mutation p.E7Q 0.07 tolerated_low_confidence(0.13) benign(0.004) TCGA-HZ-8005-01 19 8808115 8808115 C T ACTL9 Missense_Mutation p.V313I 0.15 tolerated(0.15) benign(0.005) TCGA-HZ-8005-01 1 1565062 1565062 C T MIB2 Silent p.V984V 0.19 TCGA-HZ-8005-01 1 158618345 158618345 C T SPTA1 Missense_Mutation p.R1223Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-HZ-8005-01 1 177001821 177001821 G A ASTN1 Silent p.H212H 0.10 TCGA-HZ-8005-01 1 179887348 179887348 G A TOR1AIP1 Missense_Mutation p.A576T 0.18 tolerated(0.16) possibly_damaging(0.724) TCGA-HZ-8005-01 1 202273709 202273709 C T LGR6 Missense_Mutation p.R341W 0.07 deleterious(0) possibly_damaging(0.893) TCGA-HZ-8005-01 1 21031222 21031222 G A KIF17 Missense_Mutation p.R281C 0.10 deleterious(0) probably_damaging(0.995) TCGA-HZ-8005-01 1 45294923 45294923 C T PTCH2 Missense_Mutation p.G426D 0.23 deleterious(0) probably_damaging(1) TCGA-HZ-8005-01 1 6272918 6272918 G T RNF207 Intron 0.09 TCGA-HZ-8005-01 1 79387314 79387314 G T ELTD1 Missense_Mutation p.S414Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-HZ-8005-01 1 8000140 8000140 T G TNFRSF9 Splice_Site 0.13 TCGA-HZ-8005-01 20 30556116 30556116 C A XKR7 Silent p.G46G 0.13 TCGA-HZ-8005-01 20 33147601 33147604 GTGA - MAP1LC3A Frame_Shift_Del p.S94Cfs*57 0.37 TCGA-HZ-8005-01 20 36641253 36641253 A C TTI1 Missense_Mutation p.S322R 0.27 tolerated(0.11) benign(0.005) TCGA-HZ-8005-01 21 38868512 38868512 G T DYRK1A Missense_Mutation p.K397N 0.12 deleterious(0.01) possibly_damaging(0.826) TCGA-HZ-8005-01 22 42300961 42300961 C T SREBF2 Missense_Mutation p.T1063M 0.07 tolerated(0.24) benign(0.007) TCGA-HZ-8005-01 22 42781196 42781196 C T NFAM1 Missense_Mutation p.E262K 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-HZ-8005-01 2 128051714 128051714 C T ERCC3 5'UTR 0.11 TCGA-HZ-8005-01 2 21238344 21238344 C A APOB Nonsense_Mutation p.E1136* 0.07 TCGA-HZ-8005-01 2 212578361 212578361 A T ERBB4 Missense_Mutation p.V299E 0.15 deleterious(0.01) probably_damaging(0.99) TCGA-HZ-8005-01 2 219029412 219029412 G A CXCR1 Missense_Mutation p.R175C 0.08 deleterious(0) benign(0.428) TCGA-HZ-8005-01 3 127325137 127325137 C T MCM2 Missense_Mutation p.R284C 0.28 deleterious(0.01) benign(0.433) TCGA-HZ-8005-01 3 147128364 147128364 G A ZIC1 Silent p.S155S 0.35 TCGA-HZ-8005-01 4 164272416 164272416 C A NPY5R Missense_Mutation p.P331T 0.24 tolerated(0.11) probably_damaging(1) TCGA-HZ-8005-01 4 183696229 183696229 G A TENM3 Missense_Mutation p.G1743S 0.21 tolerated(0.12) probably_damaging(0.937) TCGA-HZ-8005-01 4 83765499 83765499 A C SEC31A Intron 0.08 TCGA-HZ-8005-01 5 162930356 162930356 C G MAT2B 5'Flank 0.04 TCGA-HZ-8005-01 5 44815246 44815255 TAGTTCACTT - MRPS30 Frame_Shift_Del p.V422Yfs*2 0.17 TCGA-HZ-8005-01 5 77805805 77805805 G A LHFPL2 Missense_Mutation p.R78W 0.17 deleterious(0.02) possibly_damaging(0.646) TCGA-HZ-8005-01 6 13977539 13977539 C G RNF182 Silent p.V63V 0.16 TCGA-HZ-8005-01 6 30881824 30881824 A C GTF2H4 3'UTR 0.25 TCGA-HZ-8005-01 6 36824364 36824364 G A PPIL1 Missense_Mutation p.T93M 0.22 deleterious(0.02) probably_damaging(0.995) TCGA-HZ-8005-01 6 44255545 44255545 C A TCTE1 Silent p.T6T 0.04 TCGA-HZ-8005-01 7 17378954 17378954 C A AHR Missense_Mutation p.P502Q 0.19 deleterious(0.02) possibly_damaging(0.627) TCGA-HZ-8005-01 7 71252834 71252834 C T CALN1 Missense_Mutation p.A238T 0.05 deleterious(0) probably_damaging(0.994) TCGA-HZ-8005-01 8 103564103 103564103 C A ODF1 Missense_Mutation p.H50N 0.07 deleterious_low_confidence(0.03) possibly_damaging(0.775) TCGA-HZ-8005-01 8 110348356 110348356 G A ENY2 Splice_Site p.X3_splice 0.15 TCGA-HZ-8005-01 8 55541791 55541791 A G RP1 Silent p.V1783V 0.05 TCGA-HZ-8005-01 8 71071800 71071803 AGTT - NCOA2 Frame_Shift_Del p.K354Tfs*13 0.32 TCGA-HZ-8005-01 8 74516052 74516052 G A STAU2 Missense_Mutation p.A313V 0.24 tolerated(0.85) possibly_damaging(0.733) TCGA-HZ-8005-01 8 82439272 82439272 C T FABP12 Missense_Mutation p.D111N 0.07 tolerated(0.11) probably_damaging(0.959) TCGA-HZ-8005-01 9 120475078 120475078 A G TLR4 Silent p.K224K 0.09 TCGA-HZ-8005-01 X 101623462 101623462 G T NXF2B Silent p.R238R 0.12 TCGA-HZ-8005-01 X 101910080 101910080 C T GPRASP1 Silent p.D413D 0.31 TCGA-HZ-8005-01 X 7812055 7812055 T A VCX Nonstop_Mutation p.*207Kext*13 0.03 TCGA-HZ-8315-01 11 47267184 47267184 G A ACP2 Intron 0.15 TCGA-HZ-8315-01 11 6661892 6661892 C T DCHS1 Missense_Mutation p.R318Q 0.13 deleterious(0.03) possibly_damaging(0.527) TCGA-HZ-8315-01 11 89774373 89774373 G A TRIM49C Silent p.S338S 0.09 TCGA-HZ-8315-01 12 102056180 102056180 A G MYBPC1 Missense_Mutation p.R668G 0.11 deleterious(0) probably_damaging(0.999) TCGA-HZ-8315-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.13 deleterious(0) benign(0.361) TCGA-HZ-8315-01 12 27149763 27149763 C T TM7SF3 Missense_Mutation p.D144N 0.10 tolerated(0.51) benign(0.039) TCGA-HZ-8315-01 12 53552313 53552313 C T CSAD Silent p.R515R 0.13 TCGA-HZ-8315-01 12 54929924 54929924 C T NCKAP1L Missense_Mutation p.P990S 0.11 tolerated(0.19) benign(0.044) TCGA-HZ-8315-01 12 58019519 58019519 C T SLC26A10 Silent p.C561C 0.14 TCGA-HZ-8315-01 12 7061156 7061156 C G PTPN6 Missense_Mutation p.Q48E 0.08 tolerated(1) benign(0.083) TCGA-HZ-8315-01 12 7061302 7061302 C T PTPN6 Silent p.L96L 0.13 TCGA-HZ-8315-01 12 7173836 7173836 A G C1S Missense_Mutation p.K296E 0.13 tolerated(0.67) benign(0.438) TCGA-HZ-8315-01 12 81242056 81242056 C T LIN7A Missense_Mutation p.E83K 0.10 deleterious(0) possibly_damaging(0.881) TCGA-HZ-8315-01 13 114795342 114795342 G A RASA3 Missense_Mutation p.R132W 0.22 deleterious(0) possibly_damaging(0.777) TCGA-HZ-8315-01 13 38225420 38225420 T C TRPC4 Silent p.E687E 0.14 TCGA-HZ-8315-01 13 50108182 50108182 C T RCBTB1 3'UTR 0.12 TCGA-HZ-8315-01 14 106054174 106054174 C T IGHA2 Silent p.S115S 0.11 TCGA-HZ-8315-01 14 74345810 74345810 C G PTGR2 Missense_Mutation p.F177L 0.12 tolerated(1) benign(0) TCGA-HZ-8315-01 15 40568406 40568406 G C PAK6 3'UTR 0.16 TCGA-HZ-8315-01 16 29852959 29852959 G A MVP Missense_Mutation p.E412K 0.16 deleterious(0) probably_damaging(0.972) TCGA-HZ-8315-01 16 50745886 50745886 C A NOD2 Silent p.G688G 0.14 TCGA-HZ-8315-01 16 67262758 67262758 C G TMEM208 Missense_Mutation p.L120V 0.13 tolerated(0.2) benign(0.372) TCGA-HZ-8315-01 16 69988323 69988323 G T CLEC18A Missense_Mutation p.W101C 0.08 tolerated(0.18) benign(0.22) TCGA-HZ-8315-01 17 42330701 42330701 C - SLC4A1 Frame_Shift_Del p.G699Afs*11 0.15 TCGA-HZ-8315-01 17 43592244 43592244 C T LRRC37A4P RNA 0.25 TCGA-HZ-8315-01 17 47677787 47677787 G A SPOP Nonsense_Mutation p.Q360* 0.14 TCGA-HZ-8315-01 17 64225477 64225477 G A APOH Silent p.I7I 0.12 TCGA-HZ-8315-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.14 deleterious(0) probably_damaging(1) TCGA-HZ-8315-01 18 48591977 48591978 GT - SMAD4 Splice_Site p.X380_splice 0.11 TCGA-HZ-8315-01 19 10257056 10257056 C T DNMT1 Silent p.V955V 0.09 TCGA-HZ-8315-01 19 18420597 18420597 G A LSM4 Silent p.D73D 0.18 TCGA-HZ-8315-01 19 21990677 21990677 A G ZNF43 Missense_Mutation p.L721P 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-HZ-8315-01 19 23329161 23329161 C A ZNF730 Missense_Mutation p.L439I 0.08 deleterious(0.03) probably_damaging(0.987) TCGA-HZ-8315-01 19 34180278 34180278 C T CHST8 Silent p.L37L 0.10 TCGA-HZ-8315-01 19 43766196 43766196 G A PSG9 Silent p.D175D 0.36 TCGA-HZ-8315-01 19 49536269 49536269 A T CGB2 Missense_Mutation p.N95Y 0.10 deleterious(0) probably_damaging(0.996) TCGA-HZ-8315-01 19 50823922 50823922 G A KCNC3 Missense_Mutation p.R700C 0.14 deleterious_low_confidence(0) benign(0.12) TCGA-HZ-8315-01 19 53384748 53384748 G A ZNF320 Missense_Mutation p.H211Y 0.13 deleterious(0.01) probably_damaging(1) TCGA-HZ-8315-01 19 9026241 9026241 G A MUC16 Missense_Mutation p.R12249C 0.16 possibly_damaging(0.888) TCGA-HZ-8315-01 19 9047967 9047967 A G MUC16 Missense_Mutation p.F11222L 0.09 benign(0.003) TCGA-HZ-8315-01 1 104160219 104160219 G C AMY2A Missense_Mutation p.G53R 0.16 deleterious(0.02) possibly_damaging(0.756) TCGA-HZ-8315-01 1 20964418 20964418 G C PINK1 Silent p.L157L 0.13 TCGA-HZ-8315-01 1 2418364 2418364 G A PLCH2 Missense_Mutation p.E252K 0.14 deleterious(0.01) possibly_damaging(0.475) TCGA-HZ-8315-01 1 27058070 27058070 C - ARID1A Frame_Shift_Del p.Q594Sfs*25 0.13 TCGA-HZ-8315-01 1 28208522 28208522 C T THEMIS2 Silent p.V229V 0.08 TCGA-HZ-8315-01 1 32137235 32137235 G A COL16A1 Missense_Mutation p.P1044L 0.11 unknown(0) TCGA-HZ-8315-01 1 52849599 52849599 C T ORC1 Missense_Mutation p.G589D 0.09 tolerated(0.06) probably_damaging(0.942) TCGA-HZ-8315-01 1 62954668 62954668 A C DOCK7 Missense_Mutation p.D1779E 0.11 tolerated(0.11) benign(0.247) TCGA-HZ-8315-01 1 67242967 67242967 C T TCTEX1D1 Missense_Mutation p.P124S 0.12 deleterious(0.04) possibly_damaging(0.461) TCGA-HZ-8315-01 20 13260457 13260457 C T ISM1 Silent p.D185D 0.10 TCGA-HZ-8315-01 20 44539794 44539794 G C PLTP Missense_Mutation p.S66C 0.13 deleterious(0.01) probably_damaging(0.976) TCGA-HZ-8315-01 20 49510803 49510803 C T ADNP Missense_Mutation p.D150N 0.12 tolerated(0.07) benign(0.109) TCGA-HZ-8315-01 22 29913325 29913325 C A THOC5 Missense_Mutation p.C507F 0.13 tolerated(0.2) benign(0.308) TCGA-HZ-8315-01 2 138208441 138208441 C T THSD7B Missense_Mutation p.P996S 0.16 deleterious(0.02) unknown(0) TCGA-HZ-8315-01 2 148657137 148657138 - T ACVR2A Splice_Site p.X125_splice 0.13 TCGA-HZ-8315-01 2 166904211 166904211 C G SCN1A Missense_Mutation p.D366H 0.12 deleterious(0) probably_damaging(1) TCGA-HZ-8315-01 2 197183345 197183345 C T HECW2 Missense_Mutation p.E757K 0.14 tolerated_low_confidence(0.6) benign(0.002) TCGA-HZ-8315-01 2 21225669 21225669 C T APOB Missense_Mutation p.G4209R 0.13 benign(0.005) TCGA-HZ-8315-01 2 72362468 72362468 G A CYP26B1 Silent p.R170R 0.14 TCGA-HZ-8315-01 3 155860874 155860874 G A KCNAB1 Intron 0.15 TCGA-HZ-8315-01 3 196736601 196736601 C T MFI2 Silent p.R471R 0.12 TCGA-HZ-8315-01 3 42590112 42590112 G A SEC22C 3'Flank 0.12 TCGA-HZ-8315-01 3 51752246 51752246 G T GRM2 3'UTR 0.12 TCGA-HZ-8315-01 3 62535605 62535605 G A CADPS Nonsense_Mutation p.Q647* 0.12 TCGA-HZ-8315-01 4 52779460 52779460 C G DCUN1D4 Nonsense_Mutation p.S242* 0.12 TCGA-HZ-8315-01 5 146236103 146236103 C T PPP2R2B Intron 0.14 TCGA-HZ-8315-01 6 43269953 43269955 CTC - SLC22A7 In_Frame_Del p.S360del 0.14 TCGA-HZ-8315-01 7 20668330 20668330 T C ABCB5 Missense_Mutation p.L43P 0.13 tolerated(0.06) benign(0.114) TCGA-HZ-8315-01 7 23826539 23826539 C T STK31 Missense_Mutation p.S828L 0.12 tolerated(0.21) benign(0.042) TCGA-HZ-8315-01 8 55372342 55372342 C T SOX17 Silent p.D344D 0.16 TCGA-HZ-8315-01 9 114304519 114304519 G C ZNF483 Missense_Mutation p.G435A 0.14 tolerated(0.07) possibly_damaging(0.745) TCGA-HZ-8315-01 9 135505739 135505739 C A DDX31 Missense_Mutation p.A620S 0.11 deleterious(0.01) probably_damaging(0.995) TCGA-HZ-8315-01 9 140218269 140218269 C T EXD3 Missense_Mutation p.D698N 0.12 tolerated(0.61) benign(0.432) TCGA-HZ-8315-01 9 140952517 140952517 G A CACNA1B Missense_Mutation p.V1375M 0.12 deleterious(0.02) probably_damaging(0.98) TCGA-HZ-8315-01 X 11157013 11157013 G A ARHGAP6 Silent p.N965N 0.10 TCGA-HZ-8315-01 X 125298663 125298663 G A DCAF12L2 Silent p.D415D 0.14 TCGA-HZ-8315-01 X 149839952 149839952 G A MTM1 Missense_Mutation p.E566K 0.12 deleterious(0.01) benign(0.033) TCGA-HZ-8315-01 X 16876907 16876907 C T RBBP7 Missense_Mutation p.E169K 0.12 deleterious(0) probably_damaging(0.973) TCGA-HZ-8315-01 X 70367846 70367846 C T NLGN3 Missense_Mutation p.R83C 0.14 deleterious(0) probably_damaging(1) TCGA-HZ-8315-01 X 73051051 73051051 G A XIST RNA 0.12 TCGA-HZ-8315-01 X 74282184 74282184 C T ABCB7 Silent p.S639S 0.13 TCGA-HZ-8315-01 X 83128929 83128929 T G CYLC1 Missense_Mutation p.F405V 0.13 tolerated(1) unknown(0) TCGA-HZ-8317-01 11 18467784 18467784 G T LDHC Silent p.G246G 0.04 TCGA-HZ-8317-01 12 7559406 7559406 C T CD163L1 Missense_Mutation p.R270H 0.05 tolerated(0.2) benign(0.001) TCGA-HZ-8317-01 15 70346894 70346894 G T TLE3 Missense_Mutation p.T573K 0.05 deleterious(0) probably_damaging(0.935) TCGA-HZ-8317-01 19 57642253 57642253 G A USP29 Missense_Mutation p.C737Y 0.05 tolerated(1) benign(0.026) TCGA-HZ-8317-01 1 236739626 236739626 G A HEATR1 Missense_Mutation p.H993Y 0.03 tolerated(0.06) benign(0.001) TCGA-HZ-8317-01 20 31385055 31385055 G C DNMT3B Silent p.V480V 0.08 TCGA-HZ-8317-01 20 57484421 57484421 G A GNAS Missense_Mutation p.R844H 0.09 deleterious(0.01) probably_damaging(1) TCGA-HZ-8317-01 3 49405942 49405942 A T RHOA Missense_Mutation p.Y66N 0.05 deleterious(0) probably_damaging(0.923) TCGA-HZ-8317-01 5 140712120 140712120 G A PCDHGA1 Silent p.T623T 0.04 TCGA-HZ-8317-01 7 102953369 102953369 A T PMPCB 3'UTR 0.04 TCGA-HZ-8317-01 8 41800505 41800505 G A KAT6A Missense_Mutation p.R748C 0.05 probably_damaging(0.925) TCGA-HZ-8317-01 X 152031181 152031181 C T NSDHL Silent p.G152G 0.04 TCGA-HZ-8317-01 X 155254905 155254905 G C WASH6P RNA 0.32 TCGA-HZ-8317-01 X 31089614 31089614 C T FTHL17 Missense_Mutation p.V153M 0.04 deleterious(0.05) possibly_damaging(0.69) TCGA-HZ-8636-01 10 46965752 46965752 C T SYT15 Missense_Mutation p.R262H 0.10 tolerated(0.61) benign(0.001) TCGA-HZ-8636-01 11 1250411 1250411 C G MUC5B Missense_Mutation p.P330A 0.20 unknown(0) TCGA-HZ-8636-01 11 1262417 1262417 C T MUC5B Missense_Mutation p.P1436L 0.22 unknown(0) TCGA-HZ-8636-01 11 2356954 2356954 G A CD81-AS1 Intron 0.11 TCGA-HZ-8636-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.26 deleterious(0) possibly_damaging(0.479) TCGA-HZ-8636-01 12 40153752 40153752 A G SLC2A13 3'UTR 0.07 TCGA-HZ-8636-01 13 25263488 25263488 C T ATP12A Missense_Mutation p.S174F 0.04 deleterious(0) possibly_damaging(0.602) TCGA-HZ-8636-01 14 100575996 100575996 C T EVL Intron 0.23 TCGA-HZ-8636-01 14 20916117 20916117 G A OSGEP Nonsense_Mutation p.R247* 0.05 TCGA-HZ-8636-01 14 31404475 31404475 G A STRN3 Silent p.D294D 0.25 TCGA-HZ-8636-01 14 57268475 57268475 G A OTX2 Missense_Mutation p.S291L 0.19 deleterious(0) possibly_damaging(0.533) TCGA-HZ-8636-01 15 34102719 34102719 C T RYR3 Missense_Mutation p.R3356W 0.23 possibly_damaging(0.899) TCGA-HZ-8636-01 15 41224371 41224371 A T DLL4 Missense_Mutation p.I221F 0.04 deleterious(0) benign(0.196) TCGA-HZ-8636-01 15 63089584 63089584 G A TLN2 Missense_Mutation p.D2073N 0.05 tolerated(0.31) benign(0.006) TCGA-HZ-8636-01 15 65703590 65703590 G A IGDCC4 Silent p.A63A 0.06 TCGA-HZ-8636-01 15 73614835 73614835 G A HCN4 Missense_Mutation p.P1200L 0.08 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-HZ-8636-01 15 73615826 73615826 C T HCN4 Missense_Mutation p.G870R 0.04 deleterious_low_confidence(0.03) unknown(0) TCGA-HZ-8636-01 16 19883726 19883726 G A GPRC5B Missense_Mutation p.R148W 0.04 deleterious(0) probably_damaging(0.993) TCGA-HZ-8636-01 16 56362667 56362667 G A GNAO1 Missense_Mutation p.R143Q 0.24 deleterious(0.01) probably_damaging(0.937) TCGA-HZ-8636-01 16 88066732 88066732 C T BANP Missense_Mutation p.P353S 0.06 tolerated_low_confidence(0.61) benign(0.097) TCGA-HZ-8636-01 17 56390036 56390036 C G BZRAP1 Missense_Mutation p.E716Q 0.09 deleterious(0) probably_damaging(0.991) TCGA-HZ-8636-01 17 7225225 7225225 C T NEURL4 Missense_Mutation p.V944I 0.06 tolerated(0.12) benign(0.21) TCGA-HZ-8636-01 17 72943167 72943167 C T OTOP3 Missense_Mutation p.T406M 0.10 tolerated(0.05) possibly_damaging(0.56) TCGA-HZ-8636-01 17 7578411 7578412 - ACG TP53 In_Frame_Ins p.V173dup 0.39 TCGA-HZ-8636-01 19 36050774 36050774 C T ATP4A Missense_Mutation p.R330Q 0.21 tolerated(0.16) benign(0.082) TCGA-HZ-8636-01 19 36317411 36317411 G A NPHS1 3'UTR 0.27 TCGA-HZ-8636-01 19 38572367 38572368 - GCCACCGCCACC SIPA1L3 In_Frame_Ins p.A61_T64dup 0.10 TCGA-HZ-8636-01 19 53342917 53342917 G A ZNF468 3'UTR 0.21 TCGA-HZ-8636-01 19 55993096 55993096 G C ZNF628 Missense_Mutation p.G179A 0.17 tolerated(0.43) probably_damaging(0.996) TCGA-HZ-8636-01 19 57133444 57133444 G A ZNF71 Silent p.T263T 0.07 TCGA-HZ-8636-01 1 101379319 101379319 T C SLC30A7 Silent p.H204H 0.26 TCGA-HZ-8636-01 1 150776542 150776542 C G CTSK Missense_Mutation p.K191N 0.07 tolerated(0.05) benign(0.003) TCGA-HZ-8636-01 1 15987039 15987039 G A RSC1A1 Missense_Mutation p.D226N 0.09 tolerated(0.18) benign(0.097) TCGA-HZ-8636-01 1 28240605 28240605 G A RPA2 Missense_Mutation p.S29L 0.08 tolerated(0.07) benign(0.022) TCGA-HZ-8636-01 1 35251184 35251184 G A GJB3 3'UTR 0.12 TCGA-HZ-8636-01 20 34785959 34785959 A G EPB41L1 Missense_Mutation p.N555S 0.15 tolerated(1) benign(0) TCGA-HZ-8636-01 20 50238628 50238635 GATGTCTT - ATP9A Frame_Shift_Del p.Q698Pfs*24 0.08 TCGA-HZ-8636-01 21 47556871 47556871 C T FTCD Intron 0.32 TCGA-HZ-8636-01 22 21330770 21330770 C T AIFM3 Missense_Mutation p.R325C 0.27 tolerated(0.05) possibly_damaging(0.631) TCGA-HZ-8636-01 22 24451432 24451432 G A CABIN1 Silent p.S301S 0.18 TCGA-HZ-8636-01 22 37578651 37578651 C T C1QTNF6 Silent p.P138P 0.05 TCGA-HZ-8636-01 2 1426892 1426892 C T TPO Missense_Mutation p.T57M 0.15 deleterious(0) possibly_damaging(0.886) TCGA-HZ-8636-01 2 170070366 170070366 G A LRP2 Silent p.N1947N 0.21 TCGA-HZ-8636-01 2 185802911 185802911 G C ZNF804A Missense_Mutation p.D930H 0.08 deleterious(0.04) possibly_damaging(0.495) TCGA-HZ-8636-01 2 220428119 220428119 C T OBSL1 Missense_Mutation p.V880I 0.07 tolerated(0.08) possibly_damaging(0.837) TCGA-HZ-8636-01 2 26204102 26204102 G A KIF3C Missense_Mutation p.R229C 0.06 possibly_damaging(0.657) TCGA-HZ-8636-01 2 27156166 27156166 C T DPYSL5 Missense_Mutation p.S252L 0.15 deleterious(0.03) benign(0.005) TCGA-HZ-8636-01 3 113464819 113464819 C T NAA50 5'UTR 0.07 TCGA-HZ-8636-01 3 13860779 13860779 C T WNT7A Missense_Mutation p.V238M 0.09 deleterious(0) probably_damaging(0.982) TCGA-HZ-8636-01 3 142281392 142281392 A G ATR Silent p.D284D 0.07 TCGA-HZ-8636-01 4 169837051 169837051 G A PALLD Missense_Mutation p.R908H 0.30 deleterious(0) probably_damaging(0.984) TCGA-HZ-8636-01 5 112770240 112770240 G A TSSK1B Silent p.L99L 0.04 TCGA-HZ-8636-01 5 150660632 150660632 C G SLC36A3 Missense_Mutation p.E404Q 0.09 tolerated(0.21) benign(0.316) TCGA-HZ-8636-01 5 170837698 170837698 A G NPM1 3'UTR 0.11 TCGA-HZ-8636-01 5 72798334 72798334 A G BTF3 Missense_Mutation p.K75E 0.16 deleterious(0.01) benign(0.213) TCGA-HZ-8636-01 5 72798335 72798335 A T BTF3 Missense_Mutation p.K75M 0.16 deleterious(0) possibly_damaging(0.897) TCGA-HZ-8636-01 5 93077092 93077092 C T POU5F2 Missense_Mutation p.V60M 0.06 tolerated(0.16) benign(0.013) TCGA-HZ-8636-01 6 35716363 35716363 C T ARMC12 Missense_Mutation p.L274F 0.05 deleterious(0.01) possibly_damaging(0.881) TCGA-HZ-8636-01 7 142574925 142574925 G A TRPV6 Missense_Mutation p.R153C 0.22 tolerated(0.07) benign(0.02) TCGA-HZ-8636-01 7 23221735 23221735 C G NUPL2 Missense_Mutation p.R11G 0.25 deleterious(0.01) probably_damaging(1) TCGA-HZ-8636-01 7 82544266 82544266 G T PCLO Missense_Mutation p.Q4346K 0.09 unknown(0) TCGA-HZ-8636-01 9 138376844 138376844 C T PPP1R26 Missense_Mutation p.S163F 0.23 deleterious(0.03) probably_damaging(0.919) TCGA-HZ-8636-01 X 128927070 128927070 C A SASH3 Silent p.R303R 0.20 TCGA-HZ-8636-01 X 140335774 140335774 C T SPANXC Missense_Mutation p.R57K 0.15 tolerated(0.89) probably_damaging(0.982) TCGA-HZ-8636-01 X 153631476 153631476 C T DNASE1L1 Missense_Mutation p.R194H 0.25 tolerated(0.21) benign(0.081) TCGA-HZ-8636-01 X 153927709 153927709 C A GAB3 Missense_Mutation p.G402V 0.04 tolerated(0.53) benign(0.001) TCGA-HZ-8636-01 X 30269599 30269599 C T MAGEB1 Missense_Mutation p.T330M 0.17 tolerated(0.1) unknown(0) TCGA-HZ-8637-01 10 72489912 72489912 C T ADAMTS14 Missense_Mutation p.R337C 0.08 deleterious(0) probably_damaging(0.993) TCGA-HZ-8637-01 11 101323682 101323682 C T TRPC6 3'UTR 0.07 TCGA-HZ-8637-01 11 120998885 120998885 C T TECTA Silent p.S733S 0.22 TCGA-HZ-8637-01 12 122669269 122669269 G T LRRC43 Silent p.T118T 0.11 TCGA-HZ-8637-01 12 18891410 18891410 G C CAPZA3 Missense_Mutation p.V70L 0.10 deleterious(0.01) probably_damaging(0.99) TCGA-HZ-8637-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.11 deleterious(0) possibly_damaging(0.479) TCGA-HZ-8637-01 12 81568670 81568670 G A ACSS3 Missense_Mutation p.R401H 0.05 deleterious(0.02) possibly_damaging(0.9) TCGA-HZ-8637-01 13 46718595 46718595 C T LCP1 Missense_Mutation p.R412Q 0.04 tolerated(0.07) benign(0.042) TCGA-HZ-8637-01 14 20851408 20851408 A C TEP1 Silent p.S1324S 0.10 TCGA-HZ-8637-01 15 42147503 42147503 G T SPTBN5 Silent p.T3114T 0.08 TCGA-HZ-8637-01 16 56642525 56642525 C G MT2A 5'UTR 0.10 TCGA-HZ-8637-01 16 67203674 67203674 A G HSF4 Missense_Mutation p.S489G 0.06 tolerated_low_confidence(0.13) benign(0) TCGA-HZ-8637-01 16 89341354 89341354 G A ANKRD11 Silent p.I2527I 0.12 TCGA-HZ-8637-01 17 67144973 67144973 G A ABCA10 Missense_Mutation p.P1543S 0.05 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-HZ-8637-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.21 deleterious(0) probably_damaging(1) TCGA-HZ-8637-01 19 44103397 44103397 G A ZNF576 Missense_Mutation p.R167Q 0.05 deleterious(0.01) probably_damaging(0.994) TCGA-HZ-8637-01 1 154184613 154184613 G A C1orf43 Intron 0.17 TCGA-HZ-8637-01 1 156914928 156914928 C T ARHGEF11 Silent p.K958K 0.14 TCGA-HZ-8637-01 1 248737166 248737166 C T OR2T34 Missense_Mutation p.R298H 0.11 deleterious(0) benign(0.01) TCGA-HZ-8637-01 1 27269375 27269375 T C NUDC Missense_Mutation p.F187S 0.10 deleterious(0.04) possibly_damaging(0.551) TCGA-HZ-8637-01 20 10030553 10030553 C T ANKEF1 Missense_Mutation p.R446W 0.11 deleterious(0.03) benign(0.04) TCGA-HZ-8637-01 21 44524456 44524456 G A U2AF1 Missense_Mutation p.S34F 0.09 deleterious(0) possibly_damaging(0.835) TCGA-HZ-8637-01 22 36003260 36003260 A - MB 3'UTR 0.09 TCGA-HZ-8637-01 2 166514474 166514474 C T CSRNP3 Missense_Mutation p.R118W 0.09 deleterious(0.03) probably_damaging(0.932) TCGA-HZ-8637-01 2 216246983 216246983 G C FN1 Missense_Mutation p.Q1706E 0.09 tolerated(0.08) benign(0.445) TCGA-HZ-8637-01 2 233273223 233273223 G A ALPPL2 Missense_Mutation p.V266M 0.09 deleterious(0) probably_damaging(0.978) TCGA-HZ-8637-01 2 95515039 95515039 G A RNU6-1320P 5'Flank 0.07 TCGA-HZ-8637-01 3 108129678 108129678 T C MYH15 Missense_Mutation p.E1436G 0.05 deleterious(0) probably_damaging(0.981) TCGA-HZ-8637-01 3 36872996 36872996 T A TRANK1 Missense_Mutation p.E2649V 0.09 deleterious_low_confidence(0) benign(0.049) TCGA-HZ-8637-01 4 7968594 7968594 T C ABLIM2 3'UTR 0.27 TCGA-HZ-8637-01 5 145719395 145719395 G A POU4F3 Silent p.P135P 0.09 TCGA-HZ-8637-01 5 1879903 1879903 G A IRX4 Missense_Mutation p.R151C 0.13 deleterious(0) probably_damaging(0.999) TCGA-HZ-8637-01 6 144508554 144508554 C T STX11 Missense_Mutation p.R264W 0.13 deleterious(0) probably_damaging(0.958) TCGA-HZ-8637-01 6 3224942 3224942 C T TUBB2B 3'UTR 0.05 TCGA-HZ-8637-01 7 121694078 121694078 G A PTPRZ1 Missense_Mutation p.D2123N 0.09 deleterious(0.02) possibly_damaging(0.789) TCGA-HZ-8637-01 7 43351558 43351558 C T HECW1 Missense_Mutation p.S75L 0.11 deleterious(0.04) possibly_damaging(0.765) TCGA-HZ-8637-01 7 94050355 94050355 G A COL1A2 Missense_Mutation p.R777H 0.07 unknown(0) TCGA-HZ-8637-01 8 36788639 36788639 C T KCNU1 Silent p.H969H 0.08 TCGA-HZ-8637-01 8 53062293 53062293 T C ST18 Missense_Mutation p.E684G 0.13 deleterious(0) probably_damaging(0.983) TCGA-HZ-8637-01 9 117853350 117853350 C G TNC 5'UTR 0.20 TCGA-HZ-8637-01 9 117853369 117853369 G T TNC 5'UTR 0.19 TCGA-HZ-8637-01 9 21216655 21216655 A G IFNA16 3'UTR 0.12 TCGA-HZ-8637-01 X 107979420 107979420 C G IRS4 Missense_Mutation p.G52A 0.09 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-HZ-8637-01 X 132351106 132351106 G A TFDP3 Silent p.N394N 0.19 TCGA-HZ-8637-01 X 153069953 153069953 C T PDZD4 Missense_Mutation p.V389I 0.05 tolerated(0.2) benign(0.402) TCGA-HZ-8637-01 X 22266140 22266140 C T PHEX 3'UTR 0.13 TCGA-HZ-8637-01 X 79279655 79279655 A G TBX22 Silent p.K150K 0.19 TCGA-HZ-8637-01 X 99956515 99956515 G A SYTL4 Missense_Mutation p.R89W 0.16 deleterious(0.02) benign(0.006) TCGA-HZ-8638-01 12 106532400 106532400 T C NUAK1 Missense_Mutation p.D11G 0.38 tolerated_low_confidence(0.38) benign(0.001) TCGA-HZ-A49G-01 10 135215660 135215660 A G MTG1 Missense_Mutation p.E194G 0.06 deleterious(0.02) possibly_damaging(0.464) TCGA-HZ-A49G-01 10 81930573 81930573 C A ANXA11 Missense_Mutation p.D52Y 0.05 deleterious(0.04) unknown(0) TCGA-HZ-A49G-01 11 10785352 10785352 A C CTR9 Missense_Mutation p.N374H 0.05 deleterious(0) probably_damaging(0.997) TCGA-HZ-A49G-01 11 35227738 35227738 C T CD44 Silent p.F454F 0.08 TCGA-HZ-A49G-01 11 46782199 46782199 G A CKAP5 Missense_Mutation p.R1453C 0.10 deleterious(0) benign(0) TCGA-HZ-A49G-01 11 6262838 6262838 G A CNGA4 Silent p.Q365Q 0.06 TCGA-HZ-A49G-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.08 deleterious(0) benign(0.361) TCGA-HZ-A49G-01 12 40677757 40677757 G A LRRK2 Silent p.A774A 0.11 TCGA-HZ-A49G-01 13 103299607 103299607 A G TPP2 Silent p.L847L 0.09 TCGA-HZ-A49G-01 14 106311716 106311716 C T IGHD Missense_Mutation p.R99H 0.08 tolerated_low_confidence(0.06) benign(0.237) TCGA-HZ-A49G-01 14 24659700 24659700 G A TM9SF1 Missense_Mutation p.A438V 0.08 tolerated(0.08) possibly_damaging(0.625) TCGA-HZ-A49G-01 15 41028735 41028735 G A RMDN3 3'UTR 0.07 TCGA-HZ-A49G-01 16 69973005 69973005 G A WWP2 Missense_Mutation p.G807R 0.10 deleterious(0) probably_damaging(1) TCGA-HZ-A49G-01 16 9210640 9210640 T - C16orf72 Frame_Shift_Del p.L234* 0.11 TCGA-HZ-A49G-01 17 45788129 45788129 C T TBKBP1 3'UTR 0.05 TCGA-HZ-A49G-01 17 7577114 7577114 C A TP53 Missense_Mutation p.C275F 0.08 deleterious(0) probably_damaging(0.983) TCGA-HZ-A49G-01 19 42821981 42821981 T A TMEM145 Missense_Mutation p.F341I 0.09 deleterious(0.03) benign(0.422) TCGA-HZ-A49G-01 19 43268187 43268187 T C PSG8 Missense_Mutation p.N104S 0.08 deleterious(0) possibly_damaging(0.844) TCGA-HZ-A49G-01 19 48654515 48654515 G A LIG1 Missense_Mutation p.T183M 0.06 tolerated(0.34) benign(0.005) TCGA-HZ-A49G-01 19 6718398 6718398 G C C3 Nonsense_Mutation p.S98* 0.05 TCGA-HZ-A49G-01 1 161645099 161645099 A T FCGR2B Missense_Mutation p.K271N 0.12 deleterious(0.02) benign(0.115) TCGA-HZ-A49G-01 1 179320574 179320574 C T SOAT1 Missense_Mutation p.R525C 0.09 deleterious(0) possibly_damaging(0.841) TCGA-HZ-A49G-01 1 19212958 19212958 C A ALDH4A1 Missense_Mutation p.K99N 0.10 tolerated(0.09) possibly_damaging(0.598) TCGA-HZ-A49G-01 1 22030753 22030753 A G USP48 Splice_Site p.X839_splice 0.08 TCGA-HZ-A49G-01 1 39749752 39749752 G T MACF1 Missense_Mutation p.R315S 0.05 benign(0.046) TCGA-HZ-A49G-01 1 43888232 43888232 G T SZT2 Silent p.L617L 0.06 TCGA-HZ-A49G-01 20 21689881 21689881 G A PAX1 Missense_Mutation p.V361M 0.03 deleterious_low_confidence(0.02) benign(0.406) TCGA-HZ-A49G-01 20 41101179 41101179 C T PTPRT Missense_Mutation p.V393M 0.04 deleterious(0) probably_damaging(0.932) TCGA-HZ-A49G-01 22 22892513 22892513 A C PRAME Missense_Mutation p.I196M 0.06 tolerated(0.24) benign(0.037) TCGA-HZ-A49G-01 2 157186342 157186342 C T NR4A2 Silent p.S119S 0.08 TCGA-HZ-A49G-01 2 179476557 179476557 G A TTN Missense_Mutation p.R16827W 0.05 TCGA-HZ-A49G-01 2 235949561 235949561 A C SH3BP4 Missense_Mutation p.N50H 0.06 deleterious_low_confidence(0.04) benign(0.281) TCGA-HZ-A49G-01 3 138289266 138289266 T C CEP70 Missense_Mutation p.E120G 0.16 deleterious(0.01) benign(0.392) TCGA-HZ-A49G-01 3 44611616 44611616 C A ZKSCAN7 Missense_Mutation p.F338L 0.04 tolerated(0.23) benign(0.025) TCGA-HZ-A49G-01 5 31323483 31323483 C A CDH6 3'UTR 0.08 TCGA-HZ-A49G-01 5 31323484 31323484 C A CDH6 3'UTR 0.08 TCGA-HZ-A49G-01 6 108768484 108768484 G T LACE1 Missense_Mutation p.G292V 0.08 deleterious(0.02) benign(0.091) TCGA-HZ-A49G-01 6 165832222 165832222 A T PDE10A Missense_Mutation p.F300Y 0.10 deleterious(0) possibly_damaging(0.866) TCGA-HZ-A49G-01 6 70935662 70935662 C T COL9A1 Missense_Mutation p.G852S 0.04 probably_damaging(1) TCGA-HZ-A49G-01 7 20768012 20768012 C T ABCB5 Missense_Mutation p.A934V 0.09 deleterious(0) probably_damaging(0.923) TCGA-HZ-A49G-01 8 105456665 105456665 C T DPYS Missense_Mutation p.G202R 0.06 tolerated(0.41) probably_damaging(0.932) TCGA-HZ-A49G-01 8 145096207 145096207 A G SPATC1 Missense_Mutation p.I461V 0.08 tolerated(0.15) probably_damaging(0.984) TCGA-HZ-A49G-01 9 21971003 21971003 C T CDKN2A Missense_Mutation p.E119K 0.10 tolerated(0.68) benign(0.084) TCGA-HZ-A49G-01 9 5233847 5233847 C T INSL4 Silent p.D130D 0.06 TCGA-HZ-A49G-01 X 102564742 102564742 G A BEX2 Missense_Mutation p.R87W 0.04 tolerated(0.09) benign(0.067) TCGA-HZ-A49G-01 X 25033684 25033684 G A ARX Silent p.R57R 0.12 TCGA-HZ-A49G-01 X 63406128 63406128 G A AMER1 3'UTR 0.11 TCGA-HZ-A49H-01 10 104170669 104170669 G A PSD Silent p.I679I 0.05 TCGA-HZ-A49H-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.11 deleterious(0) possibly_damaging(0.479) TCGA-HZ-A49H-01 12 56522089 56522089 C T ESYT1 5'UTR 0.19 TCGA-HZ-A49H-01 14 24546432 24546432 G A CPNE6 Missense_Mutation p.V457M 0.09 deleterious(0) probably_damaging(0.992) TCGA-HZ-A49H-01 19 2210769 2210769 C T DOT1L Silent p.P422P 0.16 TCGA-HZ-A49H-01 1 190067264 190067264 G A BRINP3 Missense_Mutation p.R729C 0.05 deleterious(0) probably_damaging(0.996) TCGA-HZ-A49H-01 1 204006440 204006440 C T LINC00303 RNA 0.15 TCGA-HZ-A49H-01 1 37324731 37324731 C T GRIK3 Missense_Mutation p.R361H 0.16 deleterious(0.02) possibly_damaging(0.687) TCGA-HZ-A49H-01 2 118705727 118705727 T - CCDC93 Frame_Shift_Del p.N393Mfs*4 0.14 TCGA-HZ-A49H-01 5 160034027 160034027 G A ATP10B Missense_Mutation p.P969S 0.11 tolerated(0.13) benign(0.057) TCGA-HZ-A49H-01 9 123253652 123253652 A C CDK5RAP2 Missense_Mutation p.L472W 0.12 deleterious(0) possibly_damaging(0.869) TCGA-HZ-A49H-01 X 34149477 34149477 C T FAM47A Missense_Mutation p.E307K 0.15 tolerated(0.05) possibly_damaging(0.837) TCGA-HZ-A49I-01 10 104173704 104173704 C T PSD Missense_Mutation p.A459T 0.18 deleterious(0.04) possibly_damaging(0.449) TCGA-HZ-A49I-01 10 17026279 17026279 C A CUBN Splice_Site p.X1451_splice 0.17 TCGA-HZ-A49I-01 10 18961589 18961595 ACTAGCT - ARL5B Frame_Shift_Del p.A100Qfs*28 0.11 TCGA-HZ-A49I-01 10 32143120 32143120 T C ARHGAP12 Silent p.E321E 0.20 TCGA-HZ-A49I-01 10 74806700 74806700 C G P4HA1 Missense_Mutation p.D354H 0.02 deleterious(0.03) possibly_damaging(0.498) TCGA-HZ-A49I-01 10 87628834 87628834 G A GRID1 Missense_Mutation p.T295M 0.19 tolerated(1) benign(0.002) TCGA-HZ-A49I-01 10 98145915 98145915 G A TLL2 Missense_Mutation p.P637L 0.14 deleterious(0) probably_damaging(0.999) TCGA-HZ-A49I-01 11 134244879 134244879 A C GLB1L2 Missense_Mutation p.E613A 0.16 deleterious(0) probably_damaging(0.978) TCGA-HZ-A49I-01 11 63996707 63996707 C T NUDT22 Intron 0.15 TCGA-HZ-A49I-01 11 66331362 66331362 G A CTSF 3'UTR 0.09 TCGA-HZ-A49I-01 12 122999745 122999745 C T RSRC2 Missense_Mutation p.R211K 0.17 deleterious(0.05) unknown(0) TCGA-HZ-A49I-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.29 deleterious(0) benign(0.361) TCGA-HZ-A49I-01 12 69218184 69218184 C G MDM2 Missense_Mutation p.H134D 0.15 tolerated(0.59) benign(0.025) TCGA-HZ-A49I-01 13 99947840 99947840 A G GPR183 Missense_Mutation p.F187S 0.17 deleterious(0) probably_damaging(0.996) TCGA-HZ-A49I-01 14 24429127 24429127 G T DHRS4 Missense_Mutation p.G108V 0.16 deleterious(0) possibly_damaging(0.82) TCGA-HZ-A49I-01 14 94780770 94780770 C T SERPINA6 Missense_Mutation p.M72I 0.19 tolerated(0.23) benign(0.082) TCGA-HZ-A49I-01 16 3607671 3607671 C T NLRC3 Silent p.A721A 0.15 TCGA-HZ-A49I-01 17 7577544 7577544 A C TP53 Missense_Mutation p.M246R 0.16 deleterious(0) probably_damaging(1) TCGA-HZ-A49I-01 18 52924608 52924608 A G TCF4 Missense_Mutation p.W464R 0.03 deleterious(0) probably_damaging(1) TCGA-HZ-A49I-01 18 56585592 56585592 G A ZNF532 Missense_Mutation p.D25N 0.20 deleterious(0) probably_damaging(0.999) TCGA-HZ-A49I-01 19 17660273 17660273 G T FAM129C Missense_Mutation p.A594S 0.13 tolerated(0.13) possibly_damaging(0.487) TCGA-HZ-A49I-01 19 53208248 53269151 19:53208248-53269151 - ZNF611 large deletion 0.17 TCGA-HZ-A49I-01 19 55501388 55501388 A G NLRP2 Splice_Site p.X789_splice 0.15 TCGA-HZ-A49I-01 19 7796974 7796974 C T CLEC4G Silent p.R5R 0.16 TCGA-HZ-A49I-01 1 112046027 112046027 G A ADORA3 5'UTR 0.18 TCGA-HZ-A49I-01 1 156128241 156128241 C T SEMA4A Silent p.C142C 0.16 TCGA-HZ-A49I-01 1 161495096 161495096 T G HSPA6 Silent p.A216A 0.12 TCGA-HZ-A49I-01 1 16269204 16269204 C A ZBTB17 Missense_Mutation p.G620W 0.11 deleterious(0) probably_damaging(1) TCGA-HZ-A49I-01 1 177199125 177199125 C T BRINP2 Missense_Mutation p.A38V 0.14 tolerated_low_confidence(0.14) benign(0.017) TCGA-HZ-A49I-01 1 180063129 180063129 G A CEP350 Missense_Mutation p.S2630N 0.03 benign(0) TCGA-HZ-A49I-01 1 207647654 207647654 T A CR2 Missense_Mutation p.I770N 0.03 deleterious(0.05) benign(0.069) TCGA-HZ-A49I-01 1 207867914 207867914 C G CR1L Missense_Mutation p.P227R 0.18 deleterious(0.04) benign(0.259) TCGA-HZ-A49I-01 1 22928191 22928191 G A EPHA8 Missense_Mutation p.R992Q 0.12 tolerated(0.11) probably_damaging(0.999) TCGA-HZ-A49I-01 1 37947235 37947235 A T ZC3H12A Missense_Mutation p.K206M 0.15 deleterious(0) probably_damaging(0.999) TCGA-HZ-A49I-01 1 39950371 39950371 G A MACF1 Silent p.P5335P 0.15 TCGA-HZ-A49I-01 1 86372901 86372901 C T COL24A1 Silent p.G918G 0.13 TCGA-HZ-A49I-01 20 36855620 36855620 C T KIAA1755 Missense_Mutation p.R663Q 0.13 tolerated(0.34) benign(0.007) TCGA-HZ-A49I-01 20 36859706 36859706 C T KIAA1755 Missense_Mutation p.R590Q 0.22 deleterious(0.02) probably_damaging(1) TCGA-HZ-A49I-01 21 34925124 34925124 C T SON Missense_Mutation p.P1196L 0.16 benign(0.023) TCGA-HZ-A49I-01 21 40650700 40650700 G A BRWD1 Silent p.G324G 0.18 TCGA-HZ-A49I-01 2 141200116 141200116 G A LRP1B Silent p.D3457D 0.16 TCGA-HZ-A49I-01 2 179583694 179583694 G T TTN Missense_Mutation p.P8078Q 0.10 TCGA-HZ-A49I-01 3 10106107 10106107 C T FANCD2 Missense_Mutation p.P672L 0.07 tolerated(0.3) benign(0.026) TCGA-HZ-A49I-01 3 14220083 14220083 C T LSM3 5'UTR 0.15 TCGA-HZ-A49I-01 3 186338817 186338817 G A AHSG 3'UTR 0.26 TCGA-HZ-A49I-01 3 27346443 27346443 G A NEK10 Missense_Mutation p.R275C 0.04 deleterious(0) probably_damaging(0.998) TCGA-HZ-A49I-01 3 45817325 45817325 C T SLC6A20 Silent p.P170P 0.19 TCGA-HZ-A49I-01 4 185033945 185033945 G A ENPP6 Silent p.S291S 0.19 TCGA-HZ-A49I-01 4 88370318 88370318 T A NUDT9 Missense_Mutation p.N185K 0.28 tolerated(0.28) benign(0.078) TCGA-HZ-A49I-01 5 135416282 135416282 G A VTRNA2-1 RNA 0.15 TCGA-HZ-A49I-01 5 52235424 52235424 C T ITGA1 Missense_Mutation p.A1028V 0.13 tolerated(0.9) benign(0.003) TCGA-HZ-A49I-01 6 22292852 22292852 C T PRL Missense_Mutation p.R76Q 0.22 tolerated(0.26) benign(0.277) TCGA-HZ-A49I-01 7 26883668 26883668 G A SKAP2 Silent p.D96D 0.15 TCGA-HZ-A49I-01 7 30094411 30094411 T G PLEKHA8 Missense_Mutation p.C295G 0.16 tolerated(0.41) benign(0) TCGA-HZ-A49I-01 7 96650047 96650048 TC - DLX5 Missense_Mutation 0.15 TCGA-HZ-A49I-01 8 100861089 100861089 G T VPS13B Missense_Mutation p.G3368V 0.02 deleterious(0) benign(0.03) TCGA-HZ-A49I-01 8 10470187 10470187 C G RP1L1 Missense_Mutation p.R474T 0.16 possibly_damaging(0.845) TCGA-HZ-A49I-01 8 144992083 144992083 G A PLEC Missense_Mutation p.A4106V 0.14 probably_damaging(0.996) TCGA-HZ-A49I-01 8 71581369 71581369 G A LACTB2 5'UTR 0.13 TCGA-HZ-A49I-01 8 8749703 8749703 G - MFHAS1 Frame_Shift_Del p.P289Lfs*53 0.21 TCGA-HZ-A49I-01 8 92097044 92097046 ATT - OTUD6B In_Frame_Del p.Y308del 0.20 TCGA-HZ-A49I-01 9 127316820 127316820 G A NR6A1 Nonsense_Mutation p.R58* 0.19 TCGA-HZ-A49I-01 X 119738054 119738054 C A MCTS1 5'Flank 0.35 TCGA-HZ-A49I-01 Y 14821339 14821340 - A USP9Y 5'UTR 0.33 TCGA-HZ-A4BH-01 10 16794556 16794556 C T RSU1 Missense_Mutation p.V194I 0.08 tolerated(0.07) possibly_damaging(0.795) TCGA-HZ-A4BH-01 10 37506771 37506771 A G ANKRD30A Missense_Mutation p.I1022V 0.15 tolerated(0.98) benign(0) TCGA-HZ-A4BH-01 10 49457187 49457187 G A FRMPD2 Silent p.A62A 0.19 TCGA-HZ-A4BH-01 10 50833616 50833616 G A CHAT Missense_Mutation p.G284S 0.16 deleterious(0) probably_damaging(0.99) TCGA-HZ-A4BH-01 10 87362370 87362370 G A GRID1 Missense_Mutation p.S897L 0.19 deleterious_low_confidence(0) possibly_damaging(0.544) TCGA-HZ-A4BH-01 11 132205076 132205076 G A NTM 3'UTR 0.20 TCGA-HZ-A4BH-01 11 63307030 63307030 C T RARRES3 Missense_Mutation p.R18C 0.06 deleterious(0) probably_damaging(0.988) TCGA-HZ-A4BH-01 11 64434761 64434761 C T NRXN2 Missense_Mutation p.E587K 0.14 deleterious(0.04) benign(0.003) TCGA-HZ-A4BH-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.18 deleterious(0) benign(0.361) TCGA-HZ-A4BH-01 12 32135653 32135653 T C KIAA1551 Silent p.L588L 0.15 TCGA-HZ-A4BH-01 12 58127884 58127884 G A AGAP2 Missense_Mutation p.R492C 0.07 deleterious(0.04) benign(0.004) TCGA-HZ-A4BH-01 12 65857005 65857005 C T MSRB3 Missense_Mutation p.S161L 0.14 deleterious(0) probably_damaging(0.993) TCGA-HZ-A4BH-01 13 111121596 111121596 G A COL4A2 Missense_Mutation p.A710T 0.16 benign(0.013) TCGA-HZ-A4BH-01 14 45431977 45431977 C T FAM179B Missense_Mutation p.A118V 0.06 tolerated_low_confidence(0.06) benign(0.423) TCGA-HZ-A4BH-01 14 94750279 94750279 G A SERPINA10 3'UTR 0.22 TCGA-HZ-A4BH-01 15 24921804 24921804 G A NPAP1 Missense_Mutation p.E264K 0.13 tolerated(0.5) possibly_damaging(0.79) TCGA-HZ-A4BH-01 15 29346316 29346316 G A APBA2 Missense_Mutation p.V77M 0.14 tolerated_low_confidence(0.08) possibly_damaging(0.908) TCGA-HZ-A4BH-01 15 77472919 77472919 T C PEAK1 Missense_Mutation p.I450M 0.16 tolerated(0.05) probably_damaging(0.935) TCGA-HZ-A4BH-01 16 31926313 31926313 A G ZNF267 Missense_Mutation p.E248G 0.15 deleterious(0) benign(0.354) TCGA-HZ-A4BH-01 16 343713 343713 G A AXIN1 Missense_Mutation p.S654L 0.07 tolerated(0.07) possibly_damaging(0.627) TCGA-HZ-A4BH-01 16 84229512 84229512 G A ADAD2 Missense_Mutation p.V464M 0.07 deleterious(0.03) benign(0.301) TCGA-HZ-A4BH-01 17 27889843 27889843 G A ABHD15 Silent p.F381F 0.07 TCGA-HZ-A4BH-01 17 2996105 2996105 G A OR1D2 Silent p.F62F 0.09 TCGA-HZ-A4BH-01 17 3119669 3119669 G A OR1A1 Missense_Mutation p.G252D 0.17 deleterious(0) probably_damaging(0.982) TCGA-HZ-A4BH-01 17 57270937 57270937 C T PRR11 Silent p.L163L 0.12 TCGA-HZ-A4BH-01 17 57270942 57270942 C G PRR11 Missense_Mutation p.I164M 0.12 tolerated(0.28) benign(0.353) TCGA-HZ-A4BH-01 17 57271031 57271031 C T PRR11 Missense_Mutation p.P194L 0.15 deleterious(0.04) possibly_damaging(0.657) TCGA-HZ-A4BH-01 17 57271093 57271093 C T PRR11 Nonsense_Mutation p.Q215* 0.22 TCGA-HZ-A4BH-01 17 7578526 7578526 C T TP53 Missense_Mutation p.C135Y 0.16 deleterious(0) probably_damaging(1) TCGA-HZ-A4BH-01 19 10097024 10097024 G A COL5A3 Silent p.G773G 0.10 TCGA-HZ-A4BH-01 19 18099263 18099263 C T KCNN1 Missense_Mutation p.R367W 0.25 deleterious(0) probably_damaging(0.973) TCGA-HZ-A4BH-01 19 35500042 35500042 C T GRAMD1A Missense_Mutation p.R10W 0.07 deleterious(0) unknown(0) TCGA-HZ-A4BH-01 19 36302895 36302895 T A PRODH2 Missense_Mutation p.E265V 0.06 deleterious(0.02) possibly_damaging(0.624) TCGA-HZ-A4BH-01 19 36302896 36302896 C A PRODH2 Nonsense_Mutation p.E265* 0.06 TCGA-HZ-A4BH-01 19 36303115 36303115 C A PRODH2 Missense_Mutation p.G220V 0.10 deleterious(0.01) benign(0.13) TCGA-HZ-A4BH-01 19 40882579 40882579 C T PLD3 Silent p.R361R 0.20 TCGA-HZ-A4BH-01 19 43910636 43910636 G A TEX101 5'UTR 0.08 TCGA-HZ-A4BH-01 19 45860929 45860929 G A ERCC2 Silent p.D422D 0.09 TCGA-HZ-A4BH-01 19 46506729 46506729 C T CCDC61 Silent p.F67F 0.19 TCGA-HZ-A4BH-01 19 7976364 7976364 C T MAP2K7 Missense_Mutation p.T327M 0.26 deleterious(0) probably_damaging(0.961) TCGA-HZ-A4BH-01 1 107979392 107979392 C T NTNG1 Missense_Mutation p.P454L 0.15 deleterious(0.01) unknown(0) TCGA-HZ-A4BH-01 1 109560150 109560150 C A WDR47 Missense_Mutation p.D78Y 0.13 deleterious(0) probably_damaging(0.95) TCGA-HZ-A4BH-01 1 12943068 12943068 G A PRAMEF4 Missense_Mutation p.R50C 0.09 tolerated(0.18) benign(0.003) TCGA-HZ-A4BH-01 1 183604865 183604865 C T ARPC5 5'UTR 0.10 TCGA-HZ-A4BH-01 1 202714993 202714993 C T KDM5B Silent p.K772K 0.08 TCGA-HZ-A4BH-01 1 231830151 231830151 C T DISC1 Missense_Mutation p.S216L 0.07 deleterious(0) probably_damaging(0.994) TCGA-HZ-A4BH-01 1 241799053 241799053 G A CHML Missense_Mutation p.P6S 0.06 deleterious(0) probably_damaging(0.975) TCGA-HZ-A4BH-01 1 35227279 35227279 G A GJB4 Missense_Mutation p.D142N 0.16 deleterious(0) probably_damaging(1) TCGA-HZ-A4BH-01 20 60774235 60774235 G A MTG2 Missense_Mutation p.A250T 0.25 tolerated(0.07) possibly_damaging(0.588) TCGA-HZ-A4BH-01 22 19184149 19184149 C T CLTCL1 Missense_Mutation p.E1298K 0.07 deleterious(0) possibly_damaging(0.8) TCGA-HZ-A4BH-01 22 21991276 21991276 G T CCDC116 Missense_Mutation p.D587Y 0.07 deleterious_low_confidence(0.01) benign(0.006) TCGA-HZ-A4BH-01 22 38823340 38823340 G A KCNJ4 Silent p.D266D 0.08 TCGA-HZ-A4BH-01 2 113885304 113885304 A T IL1RN Missense_Mutation p.M38L 0.11 tolerated(0.13) benign(0.005) TCGA-HZ-A4BH-01 2 1520713 1520713 C T TPO Silent p.I859I 0.10 TCGA-HZ-A4BH-01 2 204009874 204009874 C T NBEAL1 Silent p.L1736L 0.06 TCGA-HZ-A4BH-01 2 204267424 204267427 ATGA - ABI2 Frame_Shift_Del p.N321Efs*22 0.16 TCGA-HZ-A4BH-01 2 71741003 71741003 T A DYSF Missense_Mutation p.S237R 0.06 tolerated(0.45) benign(0.008) TCGA-HZ-A4BH-01 3 123383037 123383037 C T MYLK Silent p.A1300A 0.08 TCGA-HZ-A4BH-01 3 178976959 178976959 T C LRRFIP1P1 RNA 0.06 TCGA-HZ-A4BH-01 3 72427709 72427709 C T RYBP Missense_Mutation p.D261N 0.16 deleterious(0) possibly_damaging(0.908) TCGA-HZ-A4BH-01 3 98251438 98251438 G C GPR15 Missense_Mutation p.K187N 0.07 tolerated(0.49) benign(0.122) TCGA-HZ-A4BH-01 4 138451227 138451227 C T PCDH18 Silent p.L672L 0.08 TCGA-HZ-A4BH-01 4 25158572 25158572 G A SEPSECS Silent p.S98S 0.17 TCGA-HZ-A4BH-01 5 140180975 140180975 C T PCDHA3 Missense_Mutation p.R65W 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.516) TCGA-HZ-A4BH-01 5 141335640 141335640 C T PCDH12 Missense_Mutation p.E593K 0.17 tolerated(0.17) benign(0.322) TCGA-HZ-A4BH-01 5 161576159 161576159 G A GABRG2 Missense_Mutation p.R363Q 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-HZ-A4BH-01 5 36170522 36170522 A G SKP2 Missense_Mutation p.T250A 0.06 tolerated(0.76) benign(0) TCGA-HZ-A4BH-01 5 5239938 5239938 G A ADAMTS16 Missense_Mutation p.R808Q 0.07 tolerated(0.11) benign(0.041) TCGA-HZ-A4BH-01 5 80550266 80550266 G A CKMT2 Missense_Mutation p.D135N 0.07 tolerated(0.26) benign(0.013) TCGA-HZ-A4BH-01 6 111498424 111498424 G C SLC16A10 Missense_Mutation p.E166D 0.10 tolerated(0.25) benign(0.075) TCGA-HZ-A4BH-01 6 22294688 22294688 C T PRL Missense_Mutation p.V52I 0.11 tolerated(0.43) benign(0.001) TCGA-HZ-A4BH-01 6 66063415 66063415 G C EYS Missense_Mutation p.F465L 0.13 tolerated(0.63) benign(0.001) TCGA-HZ-A4BH-01 7 45003667 45003667 C T MYO1G Missense_Mutation p.R909Q 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-HZ-A4BH-01 8 11831528 11831528 G A DEFB136 Missense_Mutation p.A52V 0.07 deleterious(0.01) benign(0.269) TCGA-HZ-A4BH-01 8 142445279 142445279 G A PTP4A3 3'Flank 0.19 TCGA-HZ-A4BH-01 9 127715068 127715068 G A SCAI 3'UTR 0.18 TCGA-HZ-A4BH-01 9 18941744 18941744 C T FAM154A Silent p.T104T 0.20 TCGA-HZ-A4BH-01 9 21971111 21971111 G C CDKN2A Missense_Mutation p.H83D 0.12 deleterious(0) probably_damaging(1) TCGA-HZ-A4BH-01 9 40772994 40772994 G A ZNF658 Missense_Mutation p.R761W 0.14 deleterious(0) possibly_damaging(0.765) TCGA-HZ-A4BH-01 X 106845431 106845431 T C FRMPD3 Missense_Mutation p.Y1421H 0.28 deleterious(0.02) possibly_damaging(0.837) TCGA-HZ-A4BH-01 X 34150323 34150323 G T FAM47A Silent p.R25R 0.06 TCGA-HZ-A4BK-01 10 27964309 27964309 G A MKX Missense_Mutation p.T303M 0.08 tolerated(0.08) probably_damaging(0.996) TCGA-HZ-A4BK-01 10 32740612 32740612 G A CCDC7 Silent p.S14S 0.15 TCGA-HZ-A4BK-01 10 51769519 51769519 A - AGAP6 Frame_Shift_Del p.S547Afs*69 0.10 TCGA-HZ-A4BK-01 10 74813157 74813157 C T P4HA1 Missense_Mutation p.G219R 0.07 deleterious(0) probably_damaging(1) TCGA-HZ-A4BK-01 10 88659808 88659808 G A BMPR1A Missense_Mutation p.R152Q 0.07 tolerated(0.64) benign(0.034) TCGA-HZ-A4BK-01 10 88702455 88702455 C T MMRN2 Missense_Mutation p.G696R 0.13 tolerated(0.15) benign(0.032) TCGA-HZ-A4BK-01 10 89419767 89419767 T C PAPSS2 Splice_Site p.X9_splice 0.08 TCGA-HZ-A4BK-01 11 117307888 117307888 G A DSCAML1 Missense_Mutation p.A1617V 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-HZ-A4BK-01 11 5510886 5510886 C A OR52D1 Nonsense_Mutation p.S317* 0.06 TCGA-HZ-A4BK-01 11 61719315 61719315 C T BEST1 Intron 0.07 TCGA-HZ-A4BK-01 11 6650981 6650981 C G DCHS1 Missense_Mutation p.E1653Q 0.13 tolerated(0.3) benign(0.009) TCGA-HZ-A4BK-01 12 130935797 130935797 G A RIMBP2 Silent p.S132S 0.18 TCGA-HZ-A4BK-01 12 22025599 22025599 C T ABCC9 Missense_Mutation p.G720S 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-HZ-A4BK-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.32 deleterious(0) benign(0.361) TCGA-HZ-A4BK-01 13 21311867 21311867 A C N6AMT2 Silent p.G74G 0.13 TCGA-HZ-A4BK-01 14 23898246 23898246 C T MYH7 Missense_Mutation p.R442H 0.06 deleterious(0.01) probably_damaging(0.985) TCGA-HZ-A4BK-01 16 2034871 2034871 G T GFER Missense_Mutation p.D128Y 0.07 deleterious(0) probably_damaging(0.991) TCGA-HZ-A4BK-01 16 71481928 71481928 G T ZNF23 3'UTR 0.08 TCGA-HZ-A4BK-01 16 71570744 71570744 C T CHST4 Missense_Mutation p.S55F 0.07 deleterious(0) probably_damaging(1) TCGA-HZ-A4BK-01 17 39577780 39577780 G C KRT37 Silent p.A360A 0.16 TCGA-HZ-A4BK-01 17 41566830 41566830 C T DHX8 Silent p.I54I 0.11 TCGA-HZ-A4BK-01 17 43531559 43531559 G C PLEKHM1 Silent p.L553L 0.20 TCGA-HZ-A4BK-01 17 7578479 7578479 G T TP53 Missense_Mutation p.P151T 0.17 deleterious(0) probably_damaging(0.983) TCGA-HZ-A4BK-01 19 13915898 13915898 G A ZSWIM4 Silent p.L216L 0.16 TCGA-HZ-A4BK-01 19 14581423 14581423 G A PKN1 Missense_Mutation p.D831N 0.09 deleterious(0) possibly_damaging(0.542) TCGA-HZ-A4BK-01 19 18545173 18545173 C G SSBP4 3'UTR 0.20 TCGA-HZ-A4BK-01 19 23927097 23927097 C G ZNF681 Missense_Mutation p.E419Q 0.06 deleterious(0.03) possibly_damaging(0.847) TCGA-HZ-A4BK-01 19 43430713 43430713 G A PSG7 Missense_Mutation p.R289C 0.08 deleterious(0.01) possibly_damaging(0.594) TCGA-HZ-A4BK-01 1 103453235 103453235 G C COL11A1 Missense_Mutation p.A819G 0.07 unknown(0) TCGA-HZ-A4BK-01 1 108023321 108023321 G A NTNG1 Silent p.T493T 0.06 TCGA-HZ-A4BK-01 1 11595630 11595630 G A PTCHD2 Missense_Mutation p.V1249M 0.07 deleterious(0) possibly_damaging(0.908) TCGA-HZ-A4BK-01 1 1254756 1254756 C T CPSF3L Missense_Mutation p.E123K 0.19 tolerated(0.07) probably_damaging(0.956) TCGA-HZ-A4BK-01 1 151288137 151288137 C T PI4KB Missense_Mutation p.R286H 0.08 deleterious(0) probably_damaging(1) TCGA-HZ-A4BK-01 1 151789160 151789160 G A RORC Missense_Mutation p.A93V 0.22 deleterious(0) probably_damaging(0.966) TCGA-HZ-A4BK-01 1 169528443 169528443 C A F5 Missense_Mutation p.Q226H 0.15 tolerated(0.09) benign(0.068) TCGA-HZ-A4BK-01 1 237632473 237632473 T C RYR2 Missense_Mutation p.L565P 0.15 probably_damaging(0.942) TCGA-HZ-A4BK-01 1 247769183 247769183 C T OR2G3 Missense_Mutation p.A99V 0.09 tolerated(1) benign(0.001) TCGA-HZ-A4BK-01 1 3422767 3422767 C T MEGF6 Missense_Mutation p.R608H 0.09 tolerated(0.17) benign(0.052) TCGA-HZ-A4BK-01 21 30339377 30339377 G A LTN1 Missense_Mutation p.T525I 0.08 deleterious(0.05) benign(0.009) TCGA-HZ-A4BK-01 2 201354765 201354765 G A KCTD18 3'UTR 0.08 TCGA-HZ-A4BK-01 2 207170979 207170979 C T ZDBF2 Missense_Mutation p.S576L 0.08 deleterious(0) possibly_damaging(0.706) TCGA-HZ-A4BK-01 2 71896785 71896785 G A DYSF Missense_Mutation p.R1898H 0.09 deleterious(0.04) probably_damaging(0.99) TCGA-HZ-A4BK-01 3 122634365 122634365 C T SEMA5B Missense_Mutation p.R691Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-HZ-A4BK-01 3 39185116 39185117 AG - CSRNP1 Frame_Shift_Del p.S400* 0.08 TCGA-HZ-A4BK-01 3 52726994 52726994 G T GNL3 Missense_Mutation p.A326S 0.10 tolerated(0.49) benign(0.088) TCGA-HZ-A4BK-01 3 52726995 52726995 C T GNL3 Missense_Mutation p.A326V 0.10 tolerated(0.47) benign(0.05) TCGA-HZ-A4BK-01 4 170926893 170926893 C T MFAP3L Missense_Mutation p.V46M 0.10 tolerated(0.26) benign(0.002) TCGA-HZ-A4BK-01 4 367212 367212 A G ZNF141 Missense_Mutation p.H329R 0.10 deleterious(0.01) probably_damaging(0.96) TCGA-HZ-A4BK-01 5 140482020 140482020 C T PCDHB3 Missense_Mutation p.S596L 0.06 deleterious_low_confidence(0.01) benign(0.321) TCGA-HZ-A4BK-01 5 150907687 150907687 G A FAT2 Missense_Mutation p.A3345V 0.18 probably_damaging(1) TCGA-HZ-A4BK-01 5 180039570 180039570 G A FLT4 Missense_Mutation p.A1158V 0.18 deleterious(0.01) possibly_damaging(0.466) TCGA-HZ-A4BK-01 5 33455699 33455699 T C TARS Missense_Mutation p.S228P 0.18 deleterious(0.02) probably_damaging(0.944) TCGA-HZ-A4BK-01 5 33549440 33549440 C T ADAMTS12 Missense_Mutation p.V1392M 0.08 tolerated(0.09) benign(0.169) TCGA-HZ-A4BK-01 6 33041428 33041428 A G HLA-DPA1 5'UTR 0.10 TCGA-HZ-A4BK-01 6 34498289 34498289 A C PACSIN1 Missense_Mutation p.K321T 0.07 tolerated(0.08) possibly_damaging(0.701) TCGA-HZ-A4BK-01 7 123254593 123254593 A G ASB15 Missense_Mutation p.T13A 0.09 tolerated(0.13) benign(0.011) TCGA-HZ-A4BK-01 7 150069256 150069256 C G REPIN1 Missense_Mutation p.S366C 0.13 deleterious(0.02) probably_damaging(0.993) TCGA-HZ-A4BK-01 7 53103801 53103801 G A POM121L12 Missense_Mutation p.R146H 0.15 tolerated(0.15) benign(0) TCGA-HZ-A4BK-01 8 113697836 113697836 G A CSMD3 Missense_Mutation p.L761F 0.07 deleterious(0) probably_damaging(1) TCGA-HZ-A4BK-01 8 70617453 70617453 C T SLCO5A1 Missense_Mutation p.V479I 0.12 tolerated(0.5) benign(0.393) TCGA-HZ-A4BK-01 8 73480175 73480175 C A KCNB2 Missense_Mutation p.T69K 0.09 deleterious(0) probably_damaging(0.925) TCGA-HZ-A4BK-01 9 113261346 113261346 G A SVEP1 Silent p.V552V 0.10 TCGA-HZ-A4BK-01 9 37746200 37746200 G A FRMPD1 Missense_Mutation p.A1391T 0.05 tolerated(0.53) benign(0.003) TCGA-HZ-A4BK-01 9 95773521 95773521 C T FGD3 Silent p.A334A 0.06 TCGA-HZ-A4BK-01 X 136649486 136649486 C T ZIC3 Silent p.A212A 0.10 TCGA-HZ-A4BK-01 X 13803924 13803924 C T GPM6B Missense_Mutation p.C62Y 0.11 deleterious(0) probably_damaging(1) TCGA-HZ-A4BK-01 X 153048258 153048258 C T SRPK3 Silent p.H169H 0.13 TCGA-HZ-A4BK-01 X 2161133 2161133 C T DHRSX Silent p.T245T 0.07 TCGA-HZ-A4BK-01 X 7223159 7223159 G A STS Missense_Mutation p.G344E 0.09 deleterious(0) probably_damaging(1) TCGA-HZ-A77O-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.19 deleterious(0) possibly_damaging(0.479) TCGA-HZ-A77O-01 17 74899382 74899382 C A MGAT5B Intron 0.27 TCGA-HZ-A77O-01 17 7578550 7578550 G A TP53 Missense_Mutation p.S127F 0.36 deleterious(0) probably_damaging(1) TCGA-HZ-A77O-01 19 42862961 42862961 G A MEGF8 Missense_Mutation p.R1666H 0.23 tolerated_low_confidence(0.46) benign(0) TCGA-HZ-A77O-01 19 48259965 48259965 T G GLTSCR2 Missense_Mutation p.V465G 0.17 deleterious(0) probably_damaging(0.922) TCGA-HZ-A77O-01 1 161167857 161167857 G T ADAMTS4 Silent p.A187A 0.22 TCGA-HZ-A77O-01 1 205091100 205091100 G A RBBP5 5'UTR 0.15 TCGA-HZ-A77O-01 1 229750171 229750171 C T TAF5L Missense_Mutation p.R20Q 0.20 deleterious(0.01) possibly_damaging(0.688) TCGA-HZ-A77O-01 1 23648137 23648137 C T HNRNPR Missense_Mutation p.R232H 0.32 deleterious(0) benign(0.221) TCGA-HZ-A77O-01 1 248023988 248023988 G A TRIM58 Missense_Mutation p.V164M 0.22 tolerated(0.1) benign(0.028) TCGA-HZ-A77O-01 20 42680013 42680013 G A TOX2 Missense_Mutation p.R160H 0.25 tolerated(0.11) probably_damaging(0.993) TCGA-HZ-A77O-01 20 47309258 47309258 G A PREX1 Nonsense_Mutation p.R330* 0.21 TCGA-HZ-A77O-01 22 20229361 20229361 C T RTN4R Missense_Mutation p.G432D 0.24 tolerated(0.07) probably_damaging(0.999) TCGA-HZ-A77O-01 22 44237769 44237769 G A SULT4A1 Silent p.G71G 0.14 TCGA-HZ-A77O-01 22 46098600 46098600 G A ATXN10 Missense_Mutation p.V174I 0.25 tolerated(0.18) benign(0.055) TCGA-HZ-A77O-01 2 169940070 169940070 C T DHRS9 Missense_Mutation p.A182V 0.20 deleterious(0.01) probably_damaging(0.947) TCGA-HZ-A77O-01 2 242066535 242066535 C T PASK Missense_Mutation p.G599S 0.09 tolerated(0.14) possibly_damaging(0.604) TCGA-HZ-A77O-01 2 99907775 99907775 G A LYG1 Silent p.I86I 0.24 TCGA-HZ-A77O-01 4 183714508 183714508 G A TENM3 Missense_Mutation p.R2228H 0.22 tolerated(0.21) benign(0) TCGA-HZ-A77O-01 4 8218705 8218705 C G SH3TC1 Missense_Mutation p.P217R 0.17 deleterious(0) probably_damaging(0.951) TCGA-HZ-A77O-01 4 83601872 83601872 C T SCD5 Missense_Mutation p.R186Q 0.20 tolerated(0.15) benign(0.037) TCGA-HZ-A77O-01 5 141693733 141693733 C A SPRY4 3'UTR 0.25 TCGA-HZ-A77O-01 6 146351187 146351187 C T GRM1 Silent p.F178F 0.35 TCGA-HZ-A77O-01 6 33555441 33555441 C T GGNBP1 Intron 0.36 TCGA-HZ-A77O-01 7 151921103 151921103 T C KMT2C Missense_Mutation p.D1107G 0.28 probably_damaging(0.987) TCGA-HZ-A77O-01 7 92732859 92732859 A G SAMD9 Missense_Mutation p.I851T 0.23 deleterious(0.04) benign(0.046) TCGA-HZ-A77O-01 8 139767411 139767411 G A COL22A1 Missense_Mutation p.P674S 0.03 unknown(0) TCGA-HZ-A77O-01 8 17412559 17412559 T G SLC7A2 Intron 0.27 TCGA-HZ-A77O-01 9 114911537 114911537 G T SUSD1 Silent p.G120G 0.32 TCGA-HZ-A77O-01 9 21971111 21971111 G A CDKN2A Missense_Mutation p.H83Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-HZ-A77O-01 X 100506020 100506020 A G DRP2 Missense_Mutation p.K605E 0.23 deleterious(0) probably_damaging(0.998) TCGA-HZ-A77O-01 X 31090125 31090125 G T FTHL17 5'UTR 0.21 TCGA-HZ-A77O-01 X 54099471 54099471 C A FAM120C Missense_Mutation p.D1096Y 0.22 deleterious_low_confidence(0) possibly_damaging(0.66) TCGA-HZ-A77P-01 10 103590842 103590842 G A KCNIP2 Silent p.P52P 0.13 TCGA-HZ-A77P-01 10 29822208 29822208 G A SVIL Missense_Mutation p.P363L 0.10 deleterious(0.02) benign(0.027) TCGA-HZ-A77P-01 10 35317808 35317808 G A CUL2 Missense_Mutation p.A535V 0.11 deleterious(0) benign(0.406) TCGA-HZ-A77P-01 11 13408297 13408297 G T ARNTL Silent p.P624P 0.08 TCGA-HZ-A77P-01 11 31823124 31823124 G A PAX6 Silent p.N128N 0.11 TCGA-HZ-A77P-01 11 43852525 43852525 G T HSD17B12 Splice_Site p.X168_splice 0.08 TCGA-HZ-A77P-01 11 48510911 48510911 C A OR4A47 Missense_Mutation p.D189E 0.09 deleterious_low_confidence(0.01) benign(0.248) TCGA-HZ-A77P-01 11 65408965 65408965 C T SIPA1 Silent p.N191N 0.08 TCGA-HZ-A77P-01 11 66034032 66034032 T A KLC2 Intron 0.07 TCGA-HZ-A77P-01 12 105150764 105150764 G T CHST11 Missense_Mutation p.R81L 0.08 deleterious(0.01) probably_damaging(1) TCGA-HZ-A77P-01 12 20801641 20801641 G A PDE3A Missense_Mutation p.R862H 0.10 deleterious(0) probably_damaging(0.999) TCGA-HZ-A77P-01 12 43847747 43847747 C T ADAMTS20 Missense_Mutation p.G575R 0.08 deleterious(0) probably_damaging(1) TCGA-HZ-A77P-01 12 4479899 4479899 G A FGF23 Silent p.N122N 0.11 TCGA-HZ-A77P-01 12 48367243 48367243 C T COL2A1 Missense_Mutation p.G1471R 0.10 unknown(0) TCGA-HZ-A77P-01 12 72057560 72057560 C G ZFC3H1 5'UTR 0.14 TCGA-HZ-A77P-01 13 32783787 32783787 A T FRY Missense_Mutation p.K1447N 0.17 tolerated(0.15) benign(0.296) TCGA-HZ-A77P-01 14 24475125 24475125 C T DHRS4L2 3'UTR 0.18 TCGA-HZ-A77P-01 14 64727336 64727336 G A ESR2 Silent p.D261D 0.22 TCGA-HZ-A77P-01 15 91573251 91573251 T C AC068831.10 Intron 0.11 TCGA-HZ-A77P-01 16 14280893 14280893 G T MKL2 Intron 0.09 TCGA-HZ-A77P-01 17 16285438 16285438 C G UBB Missense_Mutation p.L73V 0.11 tolerated(0.07) benign(0.05) TCGA-HZ-A77P-01 17 7578484 7578485 - A TP53 Frame_Shift_Ins p.S149Ffs*32 0.13 TCGA-HZ-A77P-01 17 79983019 79983019 T G LRRC45 Missense_Mutation p.L166R 0.11 deleterious(0.01) probably_damaging(0.917) TCGA-HZ-A77P-01 18 53017618 53017618 C T TCF4 Missense_Mutation p.R276Q 0.14 deleterious(0.01) possibly_damaging(0.691) TCGA-HZ-A77P-01 18 5419762 5419762 C T EPB41L3 Missense_Mutation p.R485Q 0.12 tolerated(0.25) benign(0.004) TCGA-HZ-A77P-01 19 1555293 1555293 C T MEX3D 3'UTR 0.12 TCGA-HZ-A77P-01 19 4219626 4219626 C T ANKRD24 Silent p.H1014H 0.11 TCGA-HZ-A77P-01 19 55672738 55672738 C T DNAAF3 Missense_Mutation p.V306I 0.10 tolerated(0.19) benign(0.259) TCGA-HZ-A77P-01 19 56156655 56156655 A G ZNF581 3'UTR 0.15 TCGA-HZ-A77P-01 19 59073841 59073841 C G MZF1 Missense_Mutation p.E601D 0.13 tolerated(0.28) benign(0.001) TCGA-HZ-A77P-01 1 160098814 160098814 C T ATP1A2 Nonsense_Mutation p.R421* 0.08 TCGA-HZ-A77P-01 1 179989235 179989235 G T CEP350 Nonsense_Mutation p.E776* 0.11 TCGA-HZ-A77P-01 1 179989588 179989594 TCAGAAG - CEP350 Frame_Shift_Del p.Q894Cfs*18 0.15 TCGA-HZ-A77P-01 1 179989793 179989793 G C CEP350 Missense_Mutation p.D962H 0.13 possibly_damaging(0.54) TCGA-HZ-A77P-01 1 182027016 182027016 C T ZNF648 Missense_Mutation p.E44K 0.11 tolerated(0.09) benign(0) TCGA-HZ-A77P-01 1 26646860 26646860 C A CD52 3'UTR 0.09 TCGA-HZ-A77P-01 1 63789346 63789346 C T FOXD3 Missense_Mutation p.P206L 0.11 deleterious(0) probably_damaging(0.998) TCGA-HZ-A77P-01 20 29978252 29978252 A G DEFB119 Missense_Mutation p.L12P 0.16 deleterious(0.01) unknown(0) TCGA-HZ-A77P-01 21 34922087 34922087 G T SON Missense_Mutation p.A184S 0.11 benign(0.364) TCGA-HZ-A77P-01 22 26743709 26743709 C T SEZ6L Missense_Mutation p.S746L 0.11 deleterious(0.03) benign(0.072) TCGA-HZ-A77P-01 22 44602360 44602360 G A PARVG 3'UTR 0.11 TCGA-HZ-A77P-01 2 64117237 64117237 T C UGP2 Missense_Mutation p.F446S 0.08 deleterious(0) probably_damaging(0.999) TCGA-HZ-A77P-01 3 101574269 101574269 C A NFKBIZ Missense_Mutation p.Q541K 0.11 tolerated(0.07) benign(0.428) TCGA-HZ-A77P-01 3 108110745 108110745 C A MYH15 Missense_Mutation p.K1784N 0.10 deleterious(0) benign(0.245) TCGA-HZ-A77P-01 3 140866041 140866041 G A SPSB4 Missense_Mutation p.R251H 0.09 deleterious(0.04) benign(0.037) TCGA-HZ-A77P-01 3 38622673 38622673 C T SCN5A Missense_Mutation p.A993T 0.13 tolerated(0.55) benign(0.01) TCGA-HZ-A77P-01 5 122163297 122163297 G A SNX2 Missense_Mutation p.V489I 0.09 tolerated(0.46) benign(0.006) TCGA-HZ-A77P-01 5 129037148 129037148 G A ADAMTS19 Missense_Mutation p.A1002T 0.10 tolerated(0.79) benign(0.004) TCGA-HZ-A77P-01 5 140725483 140725483 C T PCDHGA3 Missense_Mutation p.T628M 0.10 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-HZ-A77P-01 5 140729951 140729951 G A PCDHGB1 Missense_Mutation p.G42S 0.08 deleterious(0) possibly_damaging(0.542) TCGA-HZ-A77P-01 5 434517 434517 G T AHRR Missense_Mutation p.W576C 0.09 deleterious(0.03) possibly_damaging(0.742) TCGA-HZ-A77P-01 6 26406286 26406286 T C BTN3A1 Missense_Mutation p.Y79H 0.09 tolerated(0.2) probably_damaging(1) TCGA-HZ-A77P-01 6 26426723 26426723 G C BTN2A3P RNA 0.09 TCGA-HZ-A77P-01 6 28501886 28501886 C T GPX5 Missense_Mutation p.T203M 0.11 deleterious(0.04) benign(0.024) TCGA-HZ-A77P-01 6 31795903 31795903 T C HSPA1B Missense_Mutation p.V59A 0.07 tolerated_low_confidence(0.16) benign(0.067) TCGA-HZ-A77P-01 8 120770369 120770369 A G TAF2 Silent p.Y904Y 0.09 TCGA-HZ-A77P-01 8 21846540 21846540 G A XPO7 Missense_Mutation p.R605H 0.10 tolerated(0.14) benign(0.018) TCGA-HZ-A77P-01 8 88365930 88365930 G A CNBD1 Missense_Mutation p.V407I 0.12 tolerated(0.44) benign(0.04) TCGA-HZ-A77P-01 8 99045355 99045355 C T MATN2 Silent p.D889D 0.08 TCGA-HZ-A77P-01 9 34521742 34521742 G A ENHO 5'UTR 0.12 TCGA-HZ-A77P-01 X 299380 299380 G T PPP2R3B Silent p.I512I 0.07 TCGA-HZ-A77P-01 X 45011191 45011191 G A CXorf36 Silent p.S336S 0.23 TCGA-HZ-A77Q-01 10 81930605 81930605 T C ANXA11 Missense_Mutation p.N41S 0.06 tolerated(0.23) unknown(0) TCGA-HZ-A77Q-01 12 14774147 14774147 C - GUCY2C Frame_Shift_Del p.E869Kfs*23 0.12 TCGA-HZ-A77Q-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.06 deleterious(0.03) benign(0.376) TCGA-HZ-A77Q-01 13 110960263 110960263 C A COL4A2 Missense_Mutation p.Q5K 0.12 benign(0.006) TCGA-HZ-A77Q-01 14 100123403 100123403 C T HHIPL1 Silent p.D323D 0.11 TCGA-HZ-A77Q-01 14 79434626 79434626 C T NRXN3 Missense_Mutation p.R654C 0.13 deleterious(0) probably_damaging(0.979) TCGA-HZ-A77Q-01 15 28263683 28263683 C T OCA2 Missense_Mutation p.V223M 0.15 tolerated(0.23) benign(0.007) TCGA-HZ-A77Q-01 15 83926420 83926420 G A BNC1 Missense_Mutation p.A920V 0.08 tolerated(0.15) benign(0.139) TCGA-HZ-A77Q-01 16 1129733 1129733 G A SSTR5 Missense_Mutation p.V289M 0.16 tolerated(0.05) probably_damaging(0.975) TCGA-HZ-A77Q-01 16 81116359 81116359 T C GCSH 3'UTR 0.08 TCGA-HZ-A77Q-01 16 82033377 82033377 C T SDR42E1 Missense_Mutation p.G174D 0.06 deleterious(0) benign(0.072) TCGA-HZ-A77Q-01 17 12013744 12013744 G T MAP2K4 Splice_Site p.X229_splice 0.10 TCGA-HZ-A77Q-01 17 36708223 36708223 C T SRCIN1 Missense_Mutation p.G876R 0.11 deleterious(0.04) possibly_damaging(0.872) TCGA-HZ-A77Q-01 17 38857542 38857542 C T KRT24 Silent p.E235E 0.11 TCGA-HZ-A77Q-01 17 39521158 39521158 G T KRT33B Missense_Mutation p.Q324K 0.05 deleterious(0) possibly_damaging(0.654) TCGA-HZ-A77Q-01 17 46862366 46862366 C T TTLL6 Silent p.S653S 0.15 TCGA-HZ-A77Q-01 17 56439980 56439980 T - RNF43 Frame_Shift_Del p.V205Wfs*7 0.19 TCGA-HZ-A77Q-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.17 deleterious(0) probably_damaging(1) TCGA-HZ-A77Q-01 17 78338344 78338344 A G RNF213 Silent p.L3954L 0.08 TCGA-HZ-A77Q-01 18 48591908 48591916 TGGAGGAGA - SMAD4 In_Frame_Del p.G358_D360del 0.20 TCGA-HZ-A77Q-01 19 17213368 17213368 G A MYO9B Splice_Site p.X280_splice 0.20 TCGA-HZ-A77Q-01 19 43237144 43237144 T G PSG3 Missense_Mutation p.L167F 0.03 tolerated(0.18) probably_damaging(1) TCGA-HZ-A77Q-01 19 45997638 45997638 G A RTN2 Silent p.P200P 0.13 TCGA-HZ-A77Q-01 19 53794247 53794247 C T BIRC8 5'UTR 0.30 TCGA-HZ-A77Q-01 19 53912628 53912630 GAA - ZNF765 3'UTR 0.16 TCGA-HZ-A77Q-01 1 147381108 147381108 C T GJA8 Silent p.A342A 0.10 TCGA-HZ-A77Q-01 1 201019522 201019522 C T CACNA1S Silent p.E1412E 0.10 TCGA-HZ-A77Q-01 1 21050638 21050638 C T SH2D5 Missense_Mutation p.R246H 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-HZ-A77Q-01 20 3016525 3016525 C G PTPRA Missense_Mutation p.I712M 0.18 tolerated(0.07) possibly_damaging(0.806) TCGA-HZ-A77Q-01 21 33312484 33312484 A G HUNK Missense_Mutation p.K188E 0.05 deleterious(0) probably_damaging(0.974) TCGA-HZ-A77Q-01 21 41300976 41300976 G A PCP4 Silent p.A43A 0.08 TCGA-HZ-A77Q-01 22 31328956 31328956 G A MORC2 Silent p.A752A 0.19 TCGA-HZ-A77Q-01 2 1497610 1497610 G A TPO Missense_Mutation p.R602H 0.17 deleterious(0) probably_damaging(0.977) TCGA-HZ-A77Q-01 2 197090556 197090556 A G HECW2 Missense_Mutation p.I1319T 0.10 deleterious(0) probably_damaging(0.925) TCGA-HZ-A77Q-01 2 219411667 219411667 G C USP37 Missense_Mutation p.L193V 0.15 tolerated(0.58) benign(0.055) TCGA-HZ-A77Q-01 2 220172205 220172205 G A PTPRN Nonsense_Mutation p.Q81* 0.13 TCGA-HZ-A77Q-01 2 95541370 95541370 C T TEKT4 Missense_Mutation p.A325V 0.10 tolerated(0.29) benign(0.089) TCGA-HZ-A77Q-01 3 108353719 108353719 G C DZIP3 Missense_Mutation p.G273A 0.04 deleterious(0) benign(0.419) TCGA-HZ-A77Q-01 3 128200016 128200016 G T GATA2 Missense_Mutation p.A430E 0.09 tolerated(0.18) probably_damaging(0.986) TCGA-HZ-A77Q-01 3 140401487 140401487 G A TRIM42 Silent p.K175K 0.11 TCGA-HZ-A77Q-01 3 140401695 140401695 C T TRIM42 Missense_Mutation p.R245C 0.10 deleterious(0) possibly_damaging(0.874) TCGA-HZ-A77Q-01 3 179083014 179083014 G A MFN1 Splice_Site p.X251_splice 0.13 TCGA-HZ-A77Q-01 3 22424061 22424061 T A HMGB1P5 RNA 0.11 TCGA-HZ-A77Q-01 3 46062772 46062772 G A XCR1 Missense_Mutation p.T223M 0.10 deleterious(0) probably_damaging(0.999) TCGA-HZ-A77Q-01 4 138451498 138451498 C T PCDH18 Missense_Mutation p.R582H 0.11 tolerated(0.58) benign(0.002) TCGA-HZ-A77Q-01 4 147560372 147560372 C T POU4F2 Missense_Mutation p.S27L 0.07 deleterious_low_confidence(0) benign(0.006) TCGA-HZ-A77Q-01 4 1656790 1656790 C G FAM53A Missense_Mutation p.S266T 0.12 tolerated(0.55) possibly_damaging(0.714) TCGA-HZ-A77Q-01 4 46305547 46305547 G T GABRA2 Silent p.I262I 0.12 TCGA-HZ-A77Q-01 5 127730895 127730895 G A FBN2 Missense_Mutation p.T384M 0.12 deleterious(0) benign(0.414) TCGA-HZ-A77Q-01 5 132362202 132362202 C T ZCCHC10 Missense_Mutation p.A10T 0.10 deleterious_low_confidence(0.01) benign(0.232) TCGA-HZ-A77Q-01 5 68524181 68524181 A T MRPS36 Missense_Mutation p.K87N 0.11 deleterious(0) probably_damaging(0.929) TCGA-HZ-A77Q-01 6 26501880 26501880 C T BTN1A1 Silent p.L48L 0.04 TCGA-HZ-A77Q-01 6 34003600 34003600 G A GRM4 Missense_Mutation p.L763F 0.10 deleterious(0) probably_damaging(0.98) TCGA-HZ-A77Q-01 7 100199953 100199953 G A PCOLCE 5'UTR 0.19 TCGA-HZ-A77Q-01 7 123269090 123269090 G A ASB15 Missense_Mutation p.D348N 0.12 deleterious(0) probably_damaging(0.932) TCGA-HZ-A77Q-01 7 150934530 150934530 C T CHPF2 Missense_Mutation p.P361L 0.10 tolerated(0.07) possibly_damaging(0.83) TCGA-HZ-A77Q-01 7 40900109 40900109 G A SUGCT 3'UTR 0.14 TCGA-HZ-A77Q-01 7 50455075 50455075 C T IKZF1 Intron 0.12 TCGA-HZ-A77Q-01 7 82583922 82583923 AG - PCLO Frame_Shift_Del p.L2116Yfs*15 0.13 TCGA-HZ-A77Q-01 8 110576764 110576764 C A EBAG9 Missense_Mutation p.N206K 0.11 tolerated(0.2) benign(0.036) TCGA-HZ-A77Q-01 8 116426269 116426270 - T TRPS1 Frame_Shift_Ins p.N1289Kfs*5 0.11 TCGA-HZ-A77Q-01 8 77766289 77766289 G T ZFHX4 Missense_Mutation p.A2378S 0.13 benign(0.046) TCGA-HZ-A77Q-01 8 92364116 92364116 G C SLC26A7 Splice_Site p.X406_splice 0.10 TCGA-HZ-A77Q-01 9 135462791 135462791 C T BARHL1 Missense_Mutation p.A181V 0.11 deleterious(0.03) benign(0.072) TCGA-HZ-A77Q-01 X 49113997 49113997 C T FOXP3 Missense_Mutation p.R114Q 0.11 tolerated_low_confidence(0.3) benign(0.012) TCGA-HZ-A77Q-01 X 65819559 65819559 C T EDA2R Missense_Mutation p.D242N 0.10 tolerated(0.19) benign(0.048) TCGA-HZ-A77Q-01 X 9864330 9864330 T C SHROOM2 Silent p.F794F 0.13 TCGA-HZ-A8P0-01 10 25226219 25226219 C - PRTFDC1 Frame_Shift_Del p.G78Vfs*9 0.23 TCGA-HZ-A8P0-01 10 49667870 49667870 C T ARHGAP22 Silent p.A188A 0.18 TCGA-HZ-A8P0-01 10 88260206 88260206 T G WAPAL Missense_Mutation p.D265A 0.24 tolerated_low_confidence(0.57) benign(0.009) TCGA-HZ-A8P0-01 11 1025891 1025892 - T MUC6 Frame_Shift_Ins p.Q905Tfs*189 0.19 TCGA-HZ-A8P0-01 11 108356954 108356954 C T KDELC2 Missense_Mutation p.R205Q 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-HZ-A8P0-01 11 59211572 59211572 A G OR5A1 Missense_Mutation p.K311E 0.18 tolerated(0.08) benign(0.009) TCGA-HZ-A8P0-01 11 61730184 61730184 G A BEST1 Missense_Mutation p.D460N 0.16 tolerated_low_confidence(0.24) benign(0.018) TCGA-HZ-A8P0-01 12 104147083 104147083 C T STAB2 Silent p.N2222N 0.19 TCGA-HZ-A8P0-01 12 11149731 11149731 C T TAS2R20 Silent p.S248S 0.17 TCGA-HZ-A8P0-01 12 25380275 25380275 T A KRAS Missense_Mutation p.Q61H 0.20 deleterious(0) benign(0.371) TCGA-HZ-A8P0-01 12 53681786 53681786 G A ESPL1 Missense_Mutation p.D1403N 0.19 tolerated(0.06) possibly_damaging(0.898) TCGA-HZ-A8P0-01 14 19553823 19553823 G A POTEG Missense_Mutation p.R136H 0.04 tolerated(0.12) benign(0.003) TCGA-HZ-A8P0-01 14 22192277 22192277 C T TRAV3 Silent p.L18L 0.20 TCGA-HZ-A8P0-01 14 34269465 34269465 A T NPAS3 Missense_Mutation p.E651V 0.19 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-HZ-A8P0-01 14 95590833 95590833 C T DICER1 Missense_Mutation p.C359Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-HZ-A8P0-01 15 65219105 65219105 G C ANKDD1A Silent p.G159G 0.18 TCGA-HZ-A8P0-01 15 68119541 68119541 A T SKOR1 Intron 0.21 TCGA-HZ-A8P0-01 15 92690367 92690367 C T SLCO3A1 Missense_Mutation p.P556S 0.19 tolerated(0.06) probably_damaging(1) TCGA-HZ-A8P0-01 16 30778186 30778186 A G RNF40 Missense_Mutation p.N473S 0.12 tolerated(0.12) probably_damaging(0.992) TCGA-HZ-A8P0-01 16 3639154 3639154 C T SLX4 Silent p.A1495A 0.19 TCGA-HZ-A8P0-01 16 55803970 55803970 A G CES1P1 RNA 0.42 TCGA-HZ-A8P0-01 16 57546445 57546445 T C CCDC102A 3'UTR 0.27 TCGA-HZ-A8P0-01 17 26495642 26495642 G A NLK Missense_Mutation p.G336R 0.20 deleterious(0.04) possibly_damaging(0.582) TCGA-HZ-A8P0-01 17 8370257 8370257 C T NDEL1 Silent p.N318N 0.15 TCGA-HZ-A8P0-01 19 1207092 1207092 C - STK11 Frame_Shift_Del p.Y60* 0.37 TCGA-HZ-A8P0-01 19 39897505 39897505 C T ZFP36 5'UTR 0.19 TCGA-HZ-A8P0-01 19 50981234 50981234 C T EMC10 Silent p.L55L 0.19 TCGA-HZ-A8P0-01 19 56416346 56416346 C T NLRP13 Silent p.A860A 0.20 TCGA-HZ-A8P0-01 1 149882423 149882423 C T SV2A Missense_Mutation p.G304S 0.18 deleterious(0) probably_damaging(0.993) TCGA-HZ-A8P0-01 1 156280946 156280946 C T CCT3 Missense_Mutation p.R399H 0.11 deleterious(0) benign(0.167) TCGA-HZ-A8P0-01 1 186269304 186269304 A C PRG4 Missense_Mutation p.Y53S 0.12 probably_damaging(0.984) TCGA-HZ-A8P0-01 1 203138179 203138179 G A MYBPH Silent p.G424G 0.12 TCGA-HZ-A8P0-01 1 203138180 203138180 C T MYBPH Missense_Mutation p.G424D 0.11 tolerated(0.4) benign(0.267) TCGA-HZ-A8P0-01 1 216495296 216495296 C T USH2A Missense_Mutation p.D525N 0.11 benign(0.021) TCGA-HZ-A8P0-01 1 221875697 221875697 C T DUSP10 3'UTR 0.11 TCGA-HZ-A8P0-01 1 231044752 231044752 G A TTC13 Missense_Mutation p.S775L 0.11 deleterious(0.01) benign(0.368) TCGA-HZ-A8P0-01 1 248309316 248309316 C A OR2M5 Silent p.I289I 0.14 TCGA-HZ-A8P0-01 2 136873279 136873279 C T CXCR4 Silent p.T77T 0.18 TCGA-HZ-A8P0-01 2 152466350 152466350 T C NEB Silent p.A4101A 0.18 TCGA-HZ-A8P0-01 2 71060828 71060828 G A CD207 Missense_Mutation p.R172W 0.19 tolerated(0.06) benign(0.004) TCGA-HZ-A8P0-01 2 88828905 88828905 A G TEX37 Silent p.L152L 0.20 TCGA-HZ-A8P0-01 4 155458483 155458483 A C PLRG1 Silent p.A480A 0.16 TCGA-HZ-A8P0-01 4 159091348 159091348 G A FAM198B Intron 0.22 TCGA-HZ-A8P0-01 6 138199962 138199962 C T TNFAIP3 Silent p.A460A 0.14 TCGA-HZ-A8P0-01 8 105026833 105026833 G A RIMS2 Silent p.T1108T 0.20 TCGA-HZ-A8P0-01 8 144812372 144812372 C T FAM83H Silent p.Q127Q 0.23 TCGA-HZ-A8P0-01 8 146067242 146067242 C T ZNF7 Silent p.Y250Y 0.20 TCGA-HZ-A8P0-01 9 117846677 117846677 G A TNC Missense_Mutation p.R648W 0.19 deleterious(0.03) probably_damaging(0.997) TCGA-HZ-A8P0-01 9 140968501 140968501 G A CACNA1B Missense_Mutation p.A1614T 0.17 deleterious(0.01) probably_damaging(0.984) TCGA-HZ-A8P0-01 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.12 TCGA-HZ-A8P0-01 9 33463120 33463120 C - NOL6 Frame_Shift_Del p.D1068Ifs*14 0.13 TCGA-HZ-A8P1-01 10 103239151 103239151 C G BTRC Missense_Mutation p.C87W 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.841) TCGA-HZ-A8P1-01 10 74912158 74912158 A G ECD Missense_Mutation p.Y269H 0.34 deleterious(0) probably_damaging(1) TCGA-HZ-A8P1-01 10 85968486 85968486 G A CDHR1 Missense_Mutation p.G390E 0.24 deleterious(0) probably_damaging(0.997) TCGA-HZ-A8P1-01 11 117376404 117376404 G A DSCAML1 Silent p.I669I 0.21 TCGA-HZ-A8P1-01 11 118416125 118416125 T C IFT46 Missense_Mutation p.Q324R 0.33 deleterious(0.02) probably_damaging(0.973) TCGA-HZ-A8P1-01 11 56258789 56258789 G A OR5M8 Missense_Mutation p.R20W 0.30 deleterious(0.02) benign(0.002) TCGA-HZ-A8P1-01 11 67209273 67209273 C G CORO1B Missense_Mutation p.E129Q 0.21 tolerated(0.21) probably_damaging(0.986) TCGA-HZ-A8P1-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.28 deleterious(0) benign(0.361) TCGA-HZ-A8P1-01 12 27078694 27078694 C G ASUN Missense_Mutation p.E225D 0.26 tolerated(0.46) benign(0.013) TCGA-HZ-A8P1-01 12 50452799 50452799 C G ASIC1 Missense_Mutation p.Q84E 0.24 tolerated(1) benign(0.001) TCGA-HZ-A8P1-01 12 80747175 80747175 C A OTOGL Missense_Mutation p.N1817K 0.35 deleterious(0) probably_damaging(0.999) TCGA-HZ-A8P1-01 12 81101627 81101627 C T MYF6 Silent p.P43P 0.32 TCGA-HZ-A8P1-01 12 9303328 9303328 C T PZP Silent p.T1432T 0.30 TCGA-HZ-A8P1-01 13 113742040 113742040 C T MCF2L Missense_Mutation p.T872M 0.26 deleterious(0) possibly_damaging(0.836) TCGA-HZ-A8P1-01 13 96675949 96675949 G A UGGT2 Silent p.H102H 0.32 TCGA-HZ-A8P1-01 14 24868592 24868593 AC - NYNRIN Frame_Shift_Del p.T48Pfs*77 0.25 TCGA-HZ-A8P1-01 15 27777959 27777959 C T GABRG3 Missense_Mutation p.R446W 0.22 deleterious(0.01) probably_damaging(1) TCGA-HZ-A8P1-01 15 65890685 65890685 T C VWA9 Missense_Mutation p.D184G 0.29 tolerated(0.38) benign(0.009) TCGA-HZ-A8P1-01 15 85147523 85147523 C T ZSCAN2 Missense_Mutation p.A122V 0.29 tolerated(1) benign(0.001) TCGA-HZ-A8P1-01 16 75269619 75269619 C T BCAR1 Missense_Mutation p.R439Q 0.44 tolerated(0.4) benign(0.006) TCGA-HZ-A8P1-01 16 90027351 90027351 G T DEF8 Missense_Mutation p.R237L 0.30 tolerated(0.77) possibly_damaging(0.564) TCGA-HZ-A8P1-01 18 48575215 48575216 - T SMAD4 Frame_Shift_Ins p.S138Ifs*5 0.41 TCGA-HZ-A8P1-01 18 8636248 8636249 CA - RAB12 Splice_Site p.X173_splice 0.28 TCGA-HZ-A8P1-01 19 16060573 16060573 G A OR10H4 Silent p.T252T 0.03 TCGA-HZ-A8P1-01 19 23927502 23927502 G A ZNF681 Missense_Mutation p.R284C 0.37 tolerated(1) benign(0.001) TCGA-HZ-A8P1-01 19 53960395 53960395 G A ZNF761 RNA 0.22 TCGA-HZ-A8P1-01 19 58549369 58549369 G A ZSCAN1 Silent p.A55A 0.21 TCGA-HZ-A8P1-01 1 148017611 148017611 A G NBPF14 Silent p.G230G 0.10 TCGA-HZ-A8P1-01 1 216061988 216061988 T C USH2A Missense_Mutation p.E2668G 0.04 benign(0.043) TCGA-HZ-A8P1-01 1 223285330 223285330 C G TLR5 Silent p.L348L 0.23 TCGA-HZ-A8P1-01 1 228248086 228248086 G A WNT3A 3'UTR 0.26 TCGA-HZ-A8P1-01 1 23240039 23240039 C T EPHB2 Silent p.N980N 0.41 TCGA-HZ-A8P1-01 1 27106178 27106178 C - ARID1A Frame_Shift_Del p.S1930* 0.39 TCGA-HZ-A8P1-01 1 31191606 31191606 T G MATN1 Silent p.R214R 0.45 TCGA-HZ-A8P1-01 1 76226969 76226969 A G ACADM Missense_Mutation p.T374A 0.43 tolerated(0.13) benign(0.003) TCGA-HZ-A8P1-01 1 78414411 78414411 C T FUBP1 3'UTR 0.44 TCGA-HZ-A8P1-01 1 877573 877573 G T SAMD11 Silent p.L309L 0.13 TCGA-HZ-A8P1-01 21 15889230 15889230 C - SAMSN1 Frame_Shift_Del p.A156Pfs*23 0.19 TCGA-HZ-A8P1-01 21 31654689 31654689 C T KRTAP24-1 Missense_Mutation p.V188I 0.31 deleterious(0.05) benign(0.006) TCGA-HZ-A8P1-01 2 131520725 131520725 C T AMER3 Silent p.S360S 0.04 TCGA-HZ-A8P1-01 2 133014574 133014574 C T MIR663B RNA 0.11 TCGA-HZ-A8P1-01 2 179578044 179578044 G A TTN Silent p.S8939S 0.07 TCGA-HZ-A8P1-01 2 190597916 190597916 A G ANKAR Silent p.E1128E 0.34 TCGA-HZ-A8P1-01 2 191064754 191064754 T G C2orf88 Silent p.T56T 0.30 TCGA-HZ-A8P1-01 2 200213649 200213649 C A SATB2 Silent p.L316L 0.04 TCGA-HZ-A8P1-01 2 214182035 214182035 A C SPAG16 Missense_Mutation p.N164T 0.35 tolerated(0.19) benign(0.416) TCGA-HZ-A8P1-01 2 234875381 234875381 C T TRPM8 Silent p.I669I 0.37 TCGA-HZ-A8P1-01 2 54093911 54093911 T C PSME4 Silent p.A1790A 0.37 TCGA-HZ-A8P1-01 3 39453425 39453425 G A RPSA Silent p.V222V 0.09 TCGA-HZ-A8P1-01 3 52651477 52651477 C G PBRM1 Missense_Mutation p.R540T 0.03 deleterious(0) possibly_damaging(0.898) TCGA-HZ-A8P1-01 4 164246771 164246771 G A NPY1R Missense_Mutation p.T280I 0.36 deleterious(0.02) possibly_damaging(0.487) TCGA-HZ-A8P1-01 4 177069371 177069371 T A WDR17 Missense_Mutation p.N618K 0.35 deleterious(0) probably_damaging(0.999) TCGA-HZ-A8P1-01 4 187005297 187005297 C T TLR3 Silent p.H819H 0.33 TCGA-HZ-A8P1-01 4 48069714 48069714 T C TXK Silent p.E508E 0.35 TCGA-HZ-A8P1-01 4 7666085 7666085 C T SORCS2 Missense_Mutation p.R320W 0.26 tolerated(0.08) benign(0.02) TCGA-HZ-A8P1-01 4 83742207 83742207 T C SEC31A Missense_Mutation p.K1156E 0.02 deleterious(0) probably_damaging(0.998) TCGA-HZ-A8P1-01 4 87744851 87744851 G A SLC10A6 Missense_Mutation p.S375L 0.24 deleterious_low_confidence(0.04) benign(0.115) TCGA-HZ-A8P1-01 4 88986632 88986632 G A PKD2 Missense_Mutation p.R742Q 0.27 tolerated(0.1) possibly_damaging(0.899) TCGA-HZ-A8P1-01 4 99982458 99982458 C T METAP1 Missense_Mutation p.S384F 0.16 tolerated(0.06) benign(0) TCGA-HZ-A8P1-01 5 150715058 150715058 C T SLC36A2 Silent p.T192T 0.29 TCGA-HZ-A8P1-01 5 70308630 70308630 A G NAIP Missense_Mutation p.L38P 0.33 tolerated(0.25) benign(0.065) TCGA-HZ-A8P1-01 6 66063349 66063349 A T EYS Splice_Site p.X487_splice 0.38 TCGA-HZ-A8P1-01 6 73830223 73830223 C T KCNQ5 Silent p.Y381Y 0.07 TCGA-HZ-A8P1-01 7 127668984 127668984 C T LRRC4 Silent p.Q570Q 0.42 TCGA-HZ-A8P1-01 7 18625006 18625006 G A HDAC9 Missense_Mutation p.R42H 0.12 deleterious(0.02) probably_damaging(0.99) TCGA-HZ-A8P1-01 7 3991368 3991378 GGAGGACCTGA - SDK1 Frame_Shift_Del p.E323Cfs*46 0.25 TCGA-HZ-A8P1-01 8 118147547 118147547 C T SLC30A8 5'Flank 0.27 TCGA-HZ-A8P1-01 8 2092682 2092682 C T MYOM2 Missense_Mutation p.S1392L 0.50 tolerated(0.34) benign(0.009) TCGA-HZ-A8P1-01 8 42129663 42129663 G A IKBKB Nonsense_Mutation p.W15* 0.46 TCGA-HZ-A8P1-01 8 42129664 42129664 G A IKBKB Missense_Mutation p.E16K 0.46 tolerated(0.07) benign(0.129) TCGA-HZ-A8P1-01 9 106889705 106889705 G A SMC2 Missense_Mutation p.E912K 0.03 tolerated(0.59) benign(0.002) TCGA-HZ-A8P1-01 9 12698537 12698537 G C TYRP1 Missense_Mutation p.L265F 0.45 tolerated(0.05) benign(0.309) TCGA-HZ-A8P1-01 9 19786147 19786147 G A SLC24A2 Nonsense_Mutation p.R240* 0.21 TCGA-HZ-A8P1-01 9 35733435 35733435 T C CREB3 Silent p.L130L 0.32 TCGA-HZ-A8P1-01 X 118221146 118221146 C A KIAA1210 Missense_Mutation p.K1349N 0.11 tolerated(0.16) benign(0.032) TCGA-HZ-A8P1-01 X 138664505 138664505 C T MCF2 3'UTR 0.51 TCGA-HZ-A8P1-01 X 215966 215966 C T PLCXD1 Silent p.D312D 0.41 TCGA-HZ-A9TJ-01 10 16877170 16877170 G A CUBN Missense_Mutation p.A3402V 0.11 tolerated(0.24) benign(0.292) TCGA-HZ-A9TJ-01 10 43019068 43019068 A G ZNF37BP RNA 0.24 TCGA-HZ-A9TJ-01 11 1629414 1629414 C T KRTAP5-3 Missense_Mutation p.G68S 0.07 tolerated(0.55) unknown(0) TCGA-HZ-A9TJ-01 11 21556023 21556023 C T NELL1 Silent p.D583D 0.19 TCGA-HZ-A9TJ-01 11 3129166 3129166 C T OSBPL5 Nonsense_Mutation p.W234* 0.42 TCGA-HZ-A9TJ-01 11 36472814 36472814 T A PRR5L Missense_Mutation p.V214E 0.19 deleterious(0) probably_damaging(0.939) TCGA-HZ-A9TJ-01 11 36595176 36595176 C T RAG1 Nonsense_Mutation p.R108* 0.39 TCGA-HZ-A9TJ-01 11 49974001 49974001 G A OR4C13 Silent p.E9E 0.20 TCGA-HZ-A9TJ-01 11 59282719 59282719 G T OR4D9 Missense_Mutation p.V112F 0.15 deleterious(0) possibly_damaging(0.634) TCGA-HZ-A9TJ-01 12 104377099 104377099 G T TDG Missense_Mutation p.V242F 0.03 deleterious(0.01) benign(0.231) TCGA-HZ-A9TJ-01 12 131593364 131593364 G A GPR133 Silent p.V661V 0.60 TCGA-HZ-A9TJ-01 12 20787935 20787935 C A PDE3A Missense_Mutation p.P649H 0.09 tolerated(0.08) benign(0.345) TCGA-HZ-A9TJ-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.25 deleterious(0) possibly_damaging(0.479) TCGA-HZ-A9TJ-01 12 33031332 33031332 T C PKP2 Missense_Mutation p.Y161C 0.04 deleterious(0.02) possibly_damaging(0.886) TCGA-HZ-A9TJ-01 12 44782272 44782272 G T TMEM117 Missense_Mutation p.Q454H 0.04 tolerated_low_confidence(0.48) probably_damaging(0.991) TCGA-HZ-A9TJ-01 12 50044493 50044493 G A FMNL3 Missense_Mutation p.R656C 0.21 tolerated(0.11) probably_damaging(0.99) TCGA-HZ-A9TJ-01 12 5021899 5021899 C A KCNA1 Missense_Mutation p.S452Y 0.13 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-HZ-A9TJ-01 13 111102671 111102671 G A COL4A2 Silent p.P403P 0.30 TCGA-HZ-A9TJ-01 13 21751133 21751133 C T MRP63 Silent p.F26F 0.13 TCGA-HZ-A9TJ-01 14 100405553 100405553 G A EML1 Silent p.S756S 0.15 TCGA-HZ-A9TJ-01 14 104169592 104169592 C T XRCC3 Missense_Mutation p.R160Q 0.17 tolerated(0.46) benign(0.015) TCGA-HZ-A9TJ-01 14 75416111 75416111 G A PGF Silent p.G88G 0.04 TCGA-HZ-A9TJ-01 14 89016677 89016677 G A PTPN21 Silent p.L29L 0.21 TCGA-HZ-A9TJ-01 15 52672018 52672018 C T MYO5A Splice_Site p.X700_splice 0.15 TCGA-HZ-A9TJ-01 16 3140385 3140385 C T ZSCAN10 Silent p.A295A 0.22 TCGA-HZ-A9TJ-01 16 48117506 48117506 C T ABCC12 3'UTR 0.45 TCGA-HZ-A9TJ-01 16 57764951 57764951 C T CCDC135 Missense_Mutation p.R834C 0.33 deleterious(0) benign(0.347) TCGA-HZ-A9TJ-01 16 57945695 57945695 G A CNGB1 Silent p.L818L 0.33 TCGA-HZ-A9TJ-01 16 83994666 83994666 G A OSGIN1 Silent p.Q159Q 0.19 TCGA-HZ-A9TJ-01 17 32953262 32953262 C T TMEM132E Missense_Mutation p.R62W 0.16 deleterious(0) possibly_damaging(0.528) TCGA-HZ-A9TJ-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.48 tolerated(0.11) benign(0.308) TCGA-HZ-A9TJ-01 17 80015076 80015076 C T GPS1 3'UTR 0.19 TCGA-HZ-A9TJ-01 17 80320465 80320465 T C TEX19 Missense_Mutation p.W147R 0.19 deleterious(0) probably_damaging(0.999) TCGA-HZ-A9TJ-01 18 19353645 19353645 G A MIB1 Missense_Mutation p.D198N 0.04 deleterious(0.01) probably_damaging(0.914) TCGA-HZ-A9TJ-01 18 44661018 44661018 C T HDHD2 Silent p.K53K 0.23 TCGA-HZ-A9TJ-01 19 10203915 10203915 C T C19orf66 3'UTR 0.24 TCGA-HZ-A9TJ-01 19 50436260 50436260 G A ATF5 Missense_Mutation p.A254T 0.05 deleterious(0) probably_damaging(0.997) TCGA-HZ-A9TJ-01 19 54245814 54245815 - A MIR520H RNA 0.09 TCGA-HZ-A9TJ-01 19 55048290 55048290 C T KIR3DX1 Missense_Mutation p.T286M 0.24 deleterious(0.03) benign(0.432) TCGA-HZ-A9TJ-01 1 103400665 103400665 G C COL11A1 Missense_Mutation p.P1148R 0.12 unknown(0) TCGA-HZ-A9TJ-01 1 12364627 12364627 C T VPS13D Missense_Mutation p.T2094M 0.14 benign(0.032) TCGA-HZ-A9TJ-01 1 142713239 142713239 T A RP11-417J8.6 RNA 0.22 TCGA-HZ-A9TJ-01 1 162343627 162343627 G A C1orf111 3'UTR 0.46 TCGA-HZ-A9TJ-01 1 171509737 171509737 C T PRRC2C Silent p.V1042V 0.43 TCGA-HZ-A9TJ-01 1 223986037 223986037 C T TP53BP2 Missense_Mutation p.V610M 0.04 tolerated(0.19) probably_damaging(0.999) TCGA-HZ-A9TJ-01 1 248403055 248403055 G A OR2M4 Silent p.S275S 0.15 TCGA-HZ-A9TJ-01 1 70257750 70257750 C T LRRC7 Nonsense_Mutation p.R72* 0.28 TCGA-HZ-A9TJ-01 1 70541973 70541973 C A LRRC7 Missense_Mutation p.P1444T 0.13 tolerated(0.07) benign(0.204) TCGA-HZ-A9TJ-01 1 74905279 74905279 G A TNNI3K Missense_Mutation p.E763K 0.05 tolerated(0.4) possibly_damaging(0.703) TCGA-HZ-A9TJ-01 20 21376877 21376877 C T NKX2-4 Missense_Mutation p.R246Q 0.18 deleterious(0) probably_damaging(0.986) TCGA-HZ-A9TJ-01 20 44685548 44685548 C T SLC12A5 Silent p.N1064N 0.12 TCGA-HZ-A9TJ-01 20 45354423 45354423 G A SLC2A10 Missense_Mutation p.V250M 0.12 deleterious(0) probably_damaging(0.998) TCGA-HZ-A9TJ-01 20 55212855 55212856 CA - TFAP2C Frame_Shift_Del p.P380Rfs*57 0.25 TCGA-HZ-A9TJ-01 20 60772965 60772965 G A MTG2 Missense_Mutation p.G137E 0.05 deleterious(0) probably_damaging(1) TCGA-HZ-A9TJ-01 21 32493062 32493062 G A TIAM1 Missense_Mutation p.P1467L 0.15 deleterious(0.01) benign(0.383) TCGA-HZ-A9TJ-01 21 32589921 32589921 C A TIAM1 Missense_Mutation p.W697L 0.13 tolerated(0.16) benign(0.326) TCGA-HZ-A9TJ-01 21 46932271 46932271 G A COL18A1 Missense_Mutation p.V1507M 0.06 probably_damaging(0.996) TCGA-HZ-A9TJ-01 22 23401620 23401620 C G RTDR1 3'UTR 0.42 TCGA-HZ-A9TJ-01 22 46931761 46931761 G C CELSR1 Missense_Mutation p.P436R 0.16 deleterious(0.04) probably_damaging(1) TCGA-HZ-A9TJ-01 2 121742187 121742187 G A GLI2 Silent p.P608P 0.12 TCGA-HZ-A9TJ-01 2 133540781 133540781 G A NCKAP5 Silent p.I1201I 0.16 TCGA-HZ-A9TJ-01 2 138400061 138400061 G A THSD7B Missense_Mutation p.R1271Q 0.31 tolerated(0.91) unknown(0) TCGA-HZ-A9TJ-01 2 179397543 179397543 C T TTN Nonsense_Mutation p.W34600* 0.32 TCGA-HZ-A9TJ-01 2 227660886 227660886 G - IRS1 Frame_Shift_Del p.R857Gfs*86 0.14 TCGA-HZ-A9TJ-01 2 241700765 241700776 CCAGCTCACACT - KIF1A In_Frame_Del p.E712_L715del 0.18 TCGA-HZ-A9TJ-01 2 242312551 242312551 T A FARP2 Missense_Mutation p.V10D 0.36 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-HZ-A9TJ-01 2 242373703 242373703 T A FARP2 Missense_Mutation p.V333D 0.15 deleterious(0.01) probably_damaging(0.974) TCGA-HZ-A9TJ-01 2 26689975 26689975 G A OTOF Missense_Mutation p.R1452C 0.16 deleterious(0.02) probably_damaging(0.915) TCGA-HZ-A9TJ-01 2 43937444 43937444 G T PLEKHH2 Missense_Mutation p.G730V 0.22 deleterious(0) possibly_damaging(0.626) TCGA-HZ-A9TJ-01 2 44102445 44102445 C T ABCG8 Missense_Mutation p.A550V 0.32 deleterious(0) probably_damaging(0.916) TCGA-HZ-A9TJ-01 2 54133825 54133825 C T PSME4 Silent p.R951R 0.04 TCGA-HZ-A9TJ-01 2 71629120 71629120 A G ZNF638 Missense_Mutation p.N911S 0.06 deleterious(0.05) benign(0.176) TCGA-HZ-A9TJ-01 2 87085345 87085345 T G CD8B Missense_Mutation p.I80L 0.11 tolerated(0.08) benign(0.013) TCGA-HZ-A9TJ-01 3 105290748 105290748 A G ALCAM Missense_Mutation p.K573E 0.11 deleterious(0) unknown(0) TCGA-HZ-A9TJ-01 3 11067497 11067497 C T SLC6A1 Silent p.Y296Y 0.14 TCGA-HZ-A9TJ-01 3 133119141 133119141 C T BFSP2 Missense_Mutation p.R72C 0.15 deleterious(0.03) benign(0.082) TCGA-HZ-A9TJ-01 3 143100949 143100949 C T SLC9A9 Missense_Mutation p.V493M 0.16 deleterious(0.01) benign(0.066) TCGA-HZ-A9TJ-01 3 183017842 183017842 T A MCF2L2 Missense_Mutation p.K419I 0.08 deleterious(0.02) benign(0.175) TCGA-HZ-A9TJ-01 3 48563059 48563059 T A PFKFB4 Missense_Mutation p.Y344F 0.09 benign(0.01) TCGA-HZ-A9TJ-01 3 49842859 49842859 A T UBA7 Missense_Mutation p.L974Q 0.44 deleterious(0) possibly_damaging(0.9) TCGA-HZ-A9TJ-01 3 85961592 85961592 G A CADM2 Missense_Mutation p.R193Q 0.34 tolerated(0.91) benign(0.002) TCGA-HZ-A9TJ-01 4 100803121 100803121 G A LAMTOR3 3'UTR 0.06 TCGA-HZ-A9TJ-01 4 151738335 151738335 A G LRBA Missense_Mutation p.V1749A 0.24 tolerated(0.07) benign(0.063) TCGA-HZ-A9TJ-01 4 89744170 89744170 T C FAM13A Intron 0.21 TCGA-HZ-A9TJ-01 5 127487026 127487026 C G SLC12A2 Missense_Mutation p.A734G 0.14 deleterious(0) possibly_damaging(0.902) TCGA-HZ-A9TJ-01 5 140769477 140769477 C T PCDHGB4 Missense_Mutation p.R676C 0.18 tolerated(0.13) possibly_damaging(0.485) TCGA-HZ-A9TJ-01 5 145651191 145651191 G A RBM27 Missense_Mutation p.G981E 0.11 tolerated(0.28) benign(0.063) TCGA-HZ-A9TJ-01 5 153026597 153026597 G A GRIA1 Silent p.T120T 0.24 TCGA-HZ-A9TJ-01 5 37187926 37187926 C A C5orf42 Missense_Mutation p.C1277F 0.07 deleterious(0) probably_damaging(1) TCGA-HZ-A9TJ-01 5 45262241 45262241 C T HCN1 Missense_Mutation p.V819M 0.08 tolerated_low_confidence(0.23) benign(0.001) TCGA-HZ-A9TJ-01 6 155450620 155450620 G A TIAM2 Missense_Mutation p.G88D 0.08 tolerated_low_confidence(0.06) benign(0.394) TCGA-HZ-A9TJ-01 6 160163179 160163180 - T WTAP Splice_Site p.X49_splice 0.15 TCGA-HZ-A9TJ-01 6 166571782 166571782 C T T 3'UTR 0.09 TCGA-HZ-A9TJ-01 6 7571743 7571743 C G DSP Missense_Mutation p.S610C 0.06 benign(0.191) TCGA-HZ-A9TJ-01 7 100679220 100679220 C T MUC17 Missense_Mutation p.T1508M 0.07 unknown(0) TCGA-HZ-A9TJ-01 7 135304378 135304378 A G NUP205 Missense_Mutation p.I1391V 0.07 tolerated(0.4) benign(0.009) TCGA-HZ-A9TJ-01 7 157370783 157370783 G A PTPRN2 Missense_Mutation p.A849V 0.07 tolerated(1) benign(0.007) TCGA-HZ-A9TJ-01 7 21599227 21599227 G A DNAH11 Silent p.P233P 0.10 TCGA-HZ-A9TJ-01 7 90894600 90894600 C T FZD1 Silent p.P135P 0.04 TCGA-HZ-A9TJ-01 8 139165088 139165088 C A FAM135B Nonsense_Mutation p.E544* 0.08 TCGA-HZ-A9TJ-01 8 1645335 1645335 C T DLGAP2 Missense_Mutation p.P860L 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-HZ-A9TJ-01 8 19252165 19252165 A T SH2D4A 3'UTR 0.08 TCGA-HZ-A9TJ-01 8 32600368 32600368 C G NRG1 Intron 0.07 TCGA-HZ-A9TJ-01 8 55533656 55533656 G A RP1 Missense_Mutation p.G44R 0.04 deleterious(0) probably_damaging(1) TCGA-HZ-A9TJ-01 8 91929840 91929840 C T NECAB1 Nonsense_Mutation p.Q160* 0.07 TCGA-HZ-A9TJ-01 9 119976795 119976795 T A ASTN2 Missense_Mutation p.E286V 0.07 deleterious_low_confidence(0) unknown(0) TCGA-HZ-A9TJ-01 9 125797611 125797611 C T GPR21 Nonsense_Mutation p.R256* 0.05 TCGA-HZ-A9TJ-01 9 135102349 135102349 G A NTNG2 Missense_Mutation p.R324H 0.13 tolerated(0.21) benign(0.02) TCGA-HZ-A9TJ-01 9 21974702 21974702 T A CDKN2A Missense_Mutation p.N42I 0.61 deleterious(0) probably_damaging(1) TCGA-HZ-A9TJ-01 9 21974704 21974704 C A CDKN2A Silent p.P41P 0.61 TCGA-HZ-A9TJ-01 X 118284525 118284525 C A KIAA1210 Silent p.T6T 0.67 TCGA-HZ-A9TJ-01 X 153138054 153138054 C G L1CAM Missense_Mutation p.E64Q 0.29 tolerated(0.35) benign(0.023) TCGA-HZ-A9TJ-01 X 91132649 91132649 C T PCDH11X Silent p.F470F 0.64 TCGA-IB-7644-01 10 104142121 104142121 T - GBF1 3'UTR 0.28 TCGA-IB-7644-01 10 123844650 123844650 G A TACC2 Missense_Mutation p.V879M 0.30 possibly_damaging(0.907) TCGA-IB-7644-01 11 132307162 132307162 G A OPCML Silent p.N206N 0.32 TCGA-IB-7644-01 12 110933972 110933972 G A VPS29 Missense_Mutation p.R18W 0.28 deleterious(0) benign(0.03) TCGA-IB-7644-01 12 20854386 20854386 T C SLCO1C1 Silent p.F88F 0.36 TCGA-IB-7644-01 12 21011409 21011409 G C LST3 Missense_Mutation p.G88A 0.04 deleterious(0) probably_damaging(1) TCGA-IB-7644-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.17 deleterious(0) possibly_damaging(0.479) TCGA-IB-7644-01 13 107196318 107196318 T C ARGLU1 3'UTR 0.29 TCGA-IB-7644-01 13 25480645 25480645 C A CENPJ Missense_Mutation p.D511Y 0.32 deleterious(0) possibly_damaging(0.674) TCGA-IB-7644-01 13 96651510 96651510 T C UGGT2 Missense_Mutation p.I238V 0.31 deleterious(0.04) probably_damaging(0.995) TCGA-IB-7644-01 14 86089482 86089482 C A FLRT2 Missense_Mutation p.L542M 0.32 tolerated(0.22) probably_damaging(0.921) TCGA-IB-7644-01 15 72208758 72208758 G C MYO9A Missense_Mutation p.H880D 0.39 deleterious(0) probably_damaging(0.99) TCGA-IB-7644-01 16 1842049 1842049 G A IGFALS Silent p.L162L 0.33 TCGA-IB-7644-01 16 70055803 70055803 G C PDXDC2P RNA 0.27 TCGA-IB-7644-01 17 7579358 7579358 C A TP53 Missense_Mutation p.R110L 0.43 deleterious(0.04) possibly_damaging(0.898) TCGA-IB-7644-01 18 48575671 48575671 C G SMAD4 Nonsense_Mutation p.S144* 0.38 TCGA-IB-7644-01 18 61156680 61156680 T C SERPINB5 Missense_Mutation p.I136T 0.50 deleterious(0) benign(0.408) TCGA-IB-7644-01 19 13445253 13445253 C T CACNA1A Silent p.L379L 0.31 TCGA-IB-7644-01 19 41063285 41063285 T C SPTBN4 Silent p.H1882H 0.33 TCGA-IB-7644-01 1 228194801 228194801 C T WNT3A 5'UTR 0.27 TCGA-IB-7644-01 20 49510730 49510730 T A ADNP Missense_Mutation p.D174V 0.31 deleterious(0) probably_damaging(0.999) TCGA-IB-7644-01 22 46327243 46327243 C T WNT7B Missense_Mutation p.R102H 0.48 deleterious(0.01) possibly_damaging(0.87) TCGA-IB-7644-01 2 27601875 27601875 G A ZNF513 Silent p.D86D 0.04 TCGA-IB-7644-01 3 48680455 48680455 G A CELSR3 Missense_Mutation p.P2784L 0.33 tolerated(0.68) benign(0) TCGA-IB-7644-01 3 49166233 49166233 C T LAMB2 Missense_Mutation p.R584H 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-IB-7644-01 3 73438996 73438996 G A PDZRN3 Missense_Mutation p.R463C 0.29 deleterious(0.01) possibly_damaging(0.787) TCGA-IB-7644-01 4 78740398 78740398 G A CNOT6L Intron 0.31 TCGA-IB-7644-01 5 140188477 140188477 C T PCDHA4 Missense_Mutation p.R569W 0.34 tolerated_low_confidence(0.26) benign(0.001) TCGA-IB-7644-01 5 140788898 140788898 G A PCDHGB6 Missense_Mutation p.G377R 0.23 deleterious(0.02) possibly_damaging(0.751) TCGA-IB-7644-01 5 151045924 151045924 G A SPARC Silent p.D244D 0.21 TCGA-IB-7644-01 6 158490618 158490618 C G SYNJ2 Missense_Mutation p.S618C 0.46 deleterious(0) possibly_damaging(0.781) TCGA-IB-7644-01 6 160174521 160174521 G A WTAP Missense_Mutation p.C161Y 0.42 deleterious(0) probably_damaging(0.999) TCGA-IB-7644-01 6 17605243 17605248 TTAGTT - FAM8A1 In_Frame_Del p.L314_V315del 0.28 TCGA-IB-7644-01 6 47682152 47682152 A T GPR115 Missense_Mutation p.M391L 0.33 deleterious(0) probably_damaging(0.996) TCGA-IB-7644-01 7 75028266 75028266 C T TRIM73 Missense_Mutation p.P17S 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7644-01 X 106890883 106890883 G A PRPS1 Missense_Mutation p.G251E 0.05 deleterious(0) probably_damaging(0.987) TCGA-IB-7645-01 11 132180047 132180047 G A NTM Missense_Mutation p.V235M 0.06 tolerated(0.07) possibly_damaging(0.826) TCGA-IB-7645-01 11 61091514 61091514 C T DDB1 Silent p.E286E 0.03 TCGA-IB-7645-01 11 61091563 61091563 C G DDB1 Missense_Mutation p.R270T 0.02 deleterious(0) probably_damaging(0.997) TCGA-IB-7645-01 12 122687867 122687867 C T LRRC43 Missense_Mutation p.P617S 0.05 tolerated(0.81) benign(0.007) TCGA-IB-7645-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.10 deleterious(0) possibly_damaging(0.479) TCGA-IB-7645-01 12 52827640 52827640 C T KRT75 Missense_Mutation p.R150H 0.04 deleterious(0.01) benign(0.444) TCGA-IB-7645-01 12 68051338 68051338 C T DYRK2 Silent p.H217H 0.06 TCGA-IB-7645-01 13 109704657 109704657 A G MYO16 Missense_Mutation p.N939S 0.12 tolerated(0.2) possibly_damaging(0.823) TCGA-IB-7645-01 13 96592266 96592266 T C UGGT2 Missense_Mutation p.H586R 0.14 tolerated(0.46) benign(0.031) TCGA-IB-7645-01 14 20216249 20216249 C T OR4Q3 Silent p.I221I 0.04 TCGA-IB-7645-01 14 51026943 51026943 C T ATL1 5'UTR 0.09 TCGA-IB-7645-01 16 5112524 5112524 G A C16orf89 Missense_Mutation p.P87L 0.04 tolerated(0.11) benign(0.027) TCGA-IB-7645-01 16 84228111 84228111 C T ADAD2 Missense_Mutation p.A233V 0.08 deleterious(0.01) possibly_damaging(0.489) TCGA-IB-7645-01 17 39137358 39137358 C A KRT40 Nonsense_Mutation p.E245* 0.10 TCGA-IB-7645-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.08 TCGA-IB-7645-01 18 909532 909532 C T ADCYAP1 Missense_Mutation p.R143C 0.03 deleterious(0) probably_damaging(0.998) TCGA-IB-7645-01 19 42563599 42563599 G A GRIK5 Missense_Mutation p.R197W 0.07 deleterious(0.05) benign(0.004) TCGA-IB-7645-01 19 50666024 50666024 C T IZUMO2 Silent p.T93T 0.08 TCGA-IB-7645-01 19 56538511 56538511 G T NLRP5 Silent p.A304A 0.07 TCGA-IB-7645-01 1 152732688 152732688 C T KPRP Silent p.F208F 0.06 TCGA-IB-7645-01 1 207669664 207669664 G A CR1 Missense_Mutation p.G18S 0.07 tolerated_low_confidence(0.55) benign(0.101) TCGA-IB-7645-01 1 248756293 248756293 G C OR2T10 Nonsense_Mutation p.Y259* 0.08 TCGA-IB-7645-01 1 35370343 35370343 C T DLGAP3 Silent p.P214P 0.07 TCGA-IB-7645-01 1 39988771 39988771 C T BMP8A Silent p.H347H 0.03 TCGA-IB-7645-01 1 75685021 75685021 G A SLC44A5 Missense_Mutation p.A396V 0.04 deleterious(0) probably_damaging(0.986) TCGA-IB-7645-01 21 43838614 43838614 C T UBASH3A Silent p.S314S 0.05 TCGA-IB-7645-01 2 170177381 170177381 C T LRP2 Silent p.A31A 0.04 TCGA-IB-7645-01 2 21233909 21233909 T C APOB Missense_Mutation p.H1944R 0.04 probably_damaging(0.991) TCGA-IB-7645-01 2 216271856 216271856 G A FN1 Missense_Mutation p.R903C 0.04 deleterious(0.01) possibly_damaging(0.851) TCGA-IB-7645-01 2 219890812 219890812 C T CCDC108 Missense_Mutation p.A761T 0.04 tolerated(0.32) benign(0.073) TCGA-IB-7645-01 2 79384703 79384703 C T REG3A Missense_Mutation p.S152N 0.04 tolerated(0.66) benign(0.003) TCGA-IB-7645-01 2 98430514 98430514 G T TMEM131 Missense_Mutation p.H513N 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-IB-7645-01 3 52649473 52649473 C T PBRM1 Splice_Site p.X607_splice 0.08 TCGA-IB-7645-01 4 119161830 119161830 T C NDST3 Missense_Mutation p.V757A 0.07 tolerated(0.8) benign(0.003) TCGA-IB-7645-01 4 123168391 123168391 G A KIAA1109 Silent p.K1797K 0.03 TCGA-IB-7645-01 4 6114531 6114531 G A JAKMIP1 Missense_Mutation p.T16M 0.08 tolerated(0.23) benign(0.005) TCGA-IB-7645-01 5 5469027 5469027 A G KIAA0947 Missense_Mutation p.M2050V 0.05 deleterious(0.04) benign(0.133) TCGA-IB-7645-01 7 138341226 138341226 C T SVOPL Silent p.T167T 0.11 TCGA-IB-7645-01 7 142569526 142569526 C A TRPV6 Missense_Mutation p.R704S 0.07 tolerated_low_confidence(0.74) benign(0.05) TCGA-IB-7645-01 7 23164881 23164881 C T KLHL7 Intron 0.05 TCGA-IB-7645-01 7 47944116 47944116 G A PKD1L1 Missense_Mutation p.T597M 0.03 tolerated(0.29) benign(0.006) TCGA-IB-7645-01 8 110457259 110457259 C A PKHD1L1 Missense_Mutation p.L1721I 0.13 tolerated(0.41) benign(0.433) TCGA-IB-7645-01 8 130789715 130789715 C T GSDMC Missense_Mutation p.R40Q 0.05 tolerated(0.71) benign(0.266) TCGA-IB-7645-01 8 22926433 22926433 T C TNFRSF10B 5'UTR 0.10 TCGA-IB-7645-01 8 61139438 61139438 C G CA8 Missense_Mutation p.Q190H 0.04 deleterious(0.03) benign(0.344) TCGA-IB-7645-01 9 87635240 87635240 C A NTRK2 Silent p.T764T 0.04 TCGA-IB-7645-01 X 152807149 152807149 C T ATP2B3 Silent p.G143G 0.05 TCGA-IB-7645-01 X 18674869 18674869 C T RS1 Missense_Mutation p.E30K 0.06 tolerated_low_confidence(0.8) benign(0.024) TCGA-IB-7645-01 X 69478844 69478844 C T P2RY4 Missense_Mutation p.V211M 0.05 deleterious(0.01) benign(0.228) TCGA-IB-7645-01 X 8763195 8763195 C T FAM9A Missense_Mutation p.G252E 0.06 tolerated_low_confidence(1) unknown(0) TCGA-IB-7646-01 10 131959074 131959074 C T GLRX3 Silent p.I97I 0.33 TCGA-IB-7646-01 10 61833923 61833923 C T ANK3 Missense_Mutation p.R2239H 0.03 probably_damaging(0.98) TCGA-IB-7646-01 10 75530836 75530836 C T SEC24C Missense_Mutation p.R1090W 0.31 deleterious(0) probably_damaging(0.965) TCGA-IB-7646-01 11 113281640 113281640 C T DRD2 Missense_Mutation p.V381M 0.12 deleterious(0) possibly_damaging(0.901) TCGA-IB-7646-01 11 124007800 124007801 - A VWA5A Frame_Shift_Ins p.D571Rfs*6 0.26 TCGA-IB-7646-01 11 61549234 61549234 G A MYRF Missense_Mutation p.R985H 0.32 deleterious(0.01) possibly_damaging(0.72) TCGA-IB-7646-01 11 64812163 64812163 A C SAC3D1 Missense_Mutation p.E347D 0.12 tolerated_low_confidence(0.08) benign(0.006) TCGA-IB-7646-01 11 65638816 65638816 G T EFEMP2 Missense_Mutation p.T60N 0.12 deleterious(0.03) possibly_damaging(0.904) TCGA-IB-7646-01 11 66333389 66333389 C A CTSF Missense_Mutation p.G293C 0.30 deleterious(0) probably_damaging(1) TCGA-IB-7646-01 11 68773653 68773653 G A MRGPRF Missense_Mutation p.P42L 0.26 tolerated(0.08) possibly_damaging(0.813) TCGA-IB-7646-01 11 73008405 73008405 C T P2RY6 Missense_Mutation p.A281V 0.13 tolerated(1) benign(0.028) TCGA-IB-7646-01 11 73020596 73020596 G C ARHGEF17 Missense_Mutation p.D305H 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.733) TCGA-IB-7646-01 12 106461627 106461627 G A NUAK1 Silent p.S313S 0.21 TCGA-IB-7646-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.21 deleterious(0) benign(0.361) TCGA-IB-7646-01 12 42854329 42854329 T C PRICKLE1 Missense_Mutation p.E593G 0.20 deleterious(0.02) benign(0.164) TCGA-IB-7646-01 12 70048804 70048804 G C BEST3 Missense_Mutation p.I630M 0.24 tolerated_low_confidence(0.1) benign(0.234) TCGA-IB-7646-01 13 111368263 111368263 A G ING1 Missense_Mutation p.D158G 0.30 tolerated(0.39) benign(0.03) TCGA-IB-7646-01 13 113053418 113053418 G A SPACA7 Missense_Mutation p.E94K 0.17 tolerated(0.12) benign(0.142) TCGA-IB-7646-01 14 23869987 23869987 G C MYH6 Silent p.T447T 0.13 TCGA-IB-7646-01 14 24785420 24785420 C T LTB4R Missense_Mutation p.T188M 0.30 tolerated(0.26) possibly_damaging(0.79) TCGA-IB-7646-01 14 42360832 42360832 G A LRFN5 Missense_Mutation p.V589M 0.24 tolerated(0.22) benign(0.003) TCGA-IB-7646-01 14 45398354 45398354 G A KLHL28 Silent p.V531V 0.14 TCGA-IB-7646-01 14 92628035 92628035 C T CPSF2 Nonsense_Mutation p.Q766* 0.11 TCGA-IB-7646-01 16 1706239 1706239 C - CRAMP1L Frame_Shift_Del p.E497Rfs*5 0.08 TCGA-IB-7646-01 16 27544625 27544625 A C GTF3C1 Missense_Mutation p.L279R 0.26 deleterious(0) probably_damaging(0.99) TCGA-IB-7646-01 16 50813757 50813757 G A CYLD Silent p.L440L 0.14 TCGA-IB-7646-01 17 39596736 39596736 G A KRT38 Silent p.T146T 0.23 TCGA-IB-7646-01 17 57650476 57650476 G A DHX40 Splice_Site p.X143_splice 0.22 TCGA-IB-7646-01 17 74283929 74283929 C G QRICH2 Missense_Mutation p.G1117A 0.04 deleterious(0.03) probably_damaging(0.914) TCGA-IB-7646-01 17 7577517 7577517 A G TP53 Missense_Mutation p.I255T 0.27 deleterious(0) probably_damaging(0.999) TCGA-IB-7646-01 17 77926611 77926612 - G TBC1D16 Frame_Shift_Ins p.S263Vfs*85 0.26 TCGA-IB-7646-01 18 21745087 21745087 C - OSBPL1A Frame_Shift_Del p.E898Kfs*67 0.08 TCGA-IB-7646-01 18 5892008 5892008 G A TMEM200C Missense_Mutation p.R19C 0.11 deleterious(0) probably_damaging(0.993) TCGA-IB-7646-01 19 15383931 15383931 C A BRD4 5'UTR 0.18 TCGA-IB-7646-01 19 45818781 45818781 C T CKM Silent p.T141T 0.15 TCGA-IB-7646-01 19 50812427 50812427 C T MYH14 Missense_Mutation p.R1985W 0.13 deleterious(0) probably_damaging(0.986) TCGA-IB-7646-01 19 8666006 8666006 G T ADAMTS10 Missense_Mutation p.P206T 0.15 tolerated(0.08) benign(0.024) TCGA-IB-7646-01 1 145323670 145323670 A C NBPF10 Missense_Mutation p.E1169D 0.03 benign(0.194) TCGA-IB-7646-01 1 216496975 216496975 C T USH2A Missense_Mutation p.R464H 0.22 probably_damaging(1) TCGA-IB-7646-01 1 247920822 247920822 T C OR1C1 Missense_Mutation p.D296G 0.20 deleterious(0) benign(0.151) TCGA-IB-7646-01 20 43933094 43933094 C T MATN4 Silent p.P139P 0.33 TCGA-IB-7646-01 20 51870106 51870106 G A TSHZ2 Missense_Mutation p.G37S 0.22 tolerated(0.75) benign(0.004) TCGA-IB-7646-01 21 35469256 35469274 CCCAACGGGAAATCTGAAG TCCA SLC5A3 In_Frame_Del p.P587_D593delinsSN 0.09 TCGA-IB-7646-01 2 216288871 216288871 G A FN1 Missense_Mutation p.T405I 0.20 deleterious(0.04) benign(0.39) TCGA-IB-7646-01 3 140397360 140397360 C T TRIM42 Missense_Mutation p.R97C 0.21 deleterious(0) possibly_damaging(0.847) TCGA-IB-7646-01 3 57282266 57282266 A C APPL1 Silent p.T250T 0.25 TCGA-IB-7646-01 4 160260455 160260455 G T RAPGEF2 Missense_Mutation p.R667I 0.07 deleterious(0) probably_damaging(0.958) TCGA-IB-7646-01 4 166418730 166418730 T C CPE Missense_Mutation p.W467R 0.04 deleterious_low_confidence(0.01) unknown(0) TCGA-IB-7646-01 4 26491074 26491074 A C CCKAR Missense_Mutation p.S49A 0.10 tolerated(0.41) benign(0.338) TCGA-IB-7646-01 4 47322169 47322169 A T GABRB1 Missense_Mutation p.M163L 0.06 deleterious(0.02) possibly_damaging(0.47) TCGA-IB-7646-01 4 71522118 71522118 G T IGJ Silent p.V136V 0.24 TCGA-IB-7646-01 5 139725927 139725927 G T HBEGF 5'UTR 0.20 TCGA-IB-7646-01 5 161115979 161115979 C T GABRA6 Missense_Mutation p.R84C 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-IB-7646-01 6 105563588 105563588 G A BVES Missense_Mutation p.R311W 0.14 deleterious(0) probably_damaging(1) TCGA-IB-7646-01 6 137323435 137323435 C T IL20RA Missense_Mutation p.V308M 0.16 tolerated(0.18) benign(0.243) TCGA-IB-7646-01 6 36368236 36368236 G A PXT1 Nonsense_Mutation p.R99* 0.17 TCGA-IB-7646-01 6 75965841 75965841 T C TMEM30A Missense_Mutation p.N355D 0.15 tolerated(0.2) benign(0.098) TCGA-IB-7646-01 7 154596629 154596629 A G DPP6 Missense_Mutation p.Y501C 0.24 deleterious(0) probably_damaging(0.991) TCGA-IB-7646-01 7 41729807 41729807 C T INHBA Missense_Mutation p.R241Q 0.18 tolerated(0.12) probably_damaging(0.956) TCGA-IB-7646-01 7 42079807 42079807 G T GLI3 Silent p.A286A 0.10 TCGA-IB-7646-01 7 53104077 53104077 C T POM121L12 Missense_Mutation p.P238L 0.23 tolerated(0.06) benign(0.413) TCGA-IB-7646-01 7 6189801 6189801 C T USP42 Silent p.N658N 0.20 TCGA-IB-7646-01 8 118165302 118165302 C T SLC30A8 Missense_Mutation p.R131W 0.21 tolerated(0.07) probably_damaging(0.927) TCGA-IB-7646-01 8 1882002 1882002 A G ARHGEF10 Missense_Mutation p.K1039R 0.26 tolerated(0.1) benign(0.05) TCGA-IB-7646-01 8 27634027 27634027 C T ESCO2 Silent p.L68L 0.27 TCGA-IB-7646-01 8 35647893 35647893 G A UNC5D Missense_Mutation p.A892T 0.22 deleterious(0.01) possibly_damaging(0.621) TCGA-IB-7646-01 9 15678782 15678782 A T CCDC171 Missense_Mutation p.N368I 0.20 deleterious(0.01) possibly_damaging(0.854) TCGA-IB-7646-01 X 107977753 107977753 T A IRS4 Nonsense_Mutation p.K608* 0.47 TCGA-IB-7646-01 X 152845779 152845779 C T ATP2B3 3'UTR 0.51 TCGA-IB-7646-01 X 24839663 24839663 T C POLA1 Missense_Mutation p.V1169A 0.51 tolerated(0.07) benign(0.099) TCGA-IB-7646-01 X 49459355 49459355 A C PAGE1 Missense_Mutation p.L7V 0.41 tolerated_low_confidence(0.59) possibly_damaging(0.874) TCGA-IB-7646-01 X 55047614 55047614 C T ALAS2 Missense_Mutation p.R170H 0.49 deleterious(0) probably_damaging(1) TCGA-IB-7647-01 10 102262171 102262171 C T SEC31B Missense_Mutation p.R417H 0.13 tolerated(0.68) benign(0.002) TCGA-IB-7647-01 10 25883181 25883181 C A GPR158 Intron 0.06 TCGA-IB-7647-01 10 61847990 61847990 C G ANK3 Missense_Mutation p.G1152A 0.12 probably_damaging(0.999) TCGA-IB-7647-01 11 1031906 1031906 C T MUC6 Missense_Mutation p.R88Q 0.05 unknown(0) TCGA-IB-7647-01 11 3838588 3838588 G A PGAP2 Silent p.T57T 0.11 TCGA-IB-7647-01 11 40137319 40137319 C T LRRC4C Missense_Mutation p.R175H 0.05 deleterious(0.01) probably_damaging(0.987) TCGA-IB-7647-01 12 114836449 114836449 G T TBX5 Missense_Mutation p.H147N 0.14 deleterious(0.01) probably_damaging(0.974) TCGA-IB-7647-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.09 deleterious(0) possibly_damaging(0.479) TCGA-IB-7647-01 12 44917143 44917143 A T NELL2 Missense_Mutation p.D693E 0.10 tolerated(1) benign(0.001) TCGA-IB-7647-01 14 42356419 42356419 G A LRFN5 Missense_Mutation p.M197I 0.14 deleterious(0) benign(0.026) TCGA-IB-7647-01 15 25287181 25287181 G A SNORD109A RNA 0.07 TCGA-IB-7647-01 16 19528371 19528371 A T GDE1 Silent p.I134I 0.11 TCGA-IB-7647-01 16 19528372 19528372 A T GDE1 Missense_Mutation p.I134N 0.11 deleterious(0) possibly_damaging(0.776) TCGA-IB-7647-01 16 21974207 21974207 G T UQCRC2 Splice_Site p.X172_splice 0.10 TCGA-IB-7647-01 16 57060803 57060803 G A NLRC5 Missense_Mutation p.D650N 0.04 deleterious(0) possibly_damaging(0.868) TCGA-IB-7647-01 17 1840990 1840990 C T RTN4RL1 Silent p.A42A 0.18 TCGA-IB-7647-01 17 4806107 4806107 G A C17orf107 3'UTR 0.17 TCGA-IB-7647-01 17 48821167 48821167 C T LUC7L3 Missense_Mutation p.T176M 0.13 deleterious(0.02) unknown(0) TCGA-IB-7647-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7647-01 18 40323373 40323373 G A RIT2 3'UTR 0.13 TCGA-IB-7647-01 18 40323385 40323385 A T RIT2 3'UTR 0.10 TCGA-IB-7647-01 19 14674472 14674472 C T TECR Missense_Mutation p.P41S 0.05 tolerated(0.12) probably_damaging(1) TCGA-IB-7647-01 19 15271507 15271507 G A NOTCH3 Missense_Mutation p.P2311L 0.11 deleterious_low_confidence(0) benign(0.105) TCGA-IB-7647-01 19 19625658 19625658 G A TSSK6 Silent p.Y193Y 0.12 TCGA-IB-7647-01 19 38976522 38976522 G A RYR1 Missense_Mutation p.A1743T 0.12 benign(0.067) TCGA-IB-7647-01 19 41025935 41025935 C T SPTBN4 Silent p.L1177L 0.17 TCGA-IB-7647-01 19 45853603 45853603 C G KLC3 Nonsense_Mutation p.S383* 0.07 TCGA-IB-7647-01 19 45853629 45853629 C T KLC3 Nonsense_Mutation p.Q392* 0.09 TCGA-IB-7647-01 19 45854888 45854888 C G ERCC2 Nonstop_Mutation p.*761Sext*7 0.08 TCGA-IB-7647-01 19 45854979 45854979 C G ERCC2 Missense_Mutation p.E731Q 0.09 tolerated(0.09) possibly_damaging(0.77) TCGA-IB-7647-01 19 58232832 58232832 C T ZNF671 Missense_Mutation p.D208N 0.05 tolerated(0.24) benign(0.216) TCGA-IB-7647-01 19 9074001 9074001 G A MUC16 Missense_Mutation p.A4482V 0.07 unknown(0) TCGA-IB-7647-01 1 16455955 16455955 G A EPHA2 Silent p.I933I 0.03 TCGA-IB-7647-01 1 205241064 205241064 A G TMCC2 Missense_Mutation p.N648D 0.11 deleterious(0) possibly_damaging(0.897) TCGA-IB-7647-01 1 229568336 229568336 C T ACTA1 Missense_Mutation p.V141M 0.17 deleterious_low_confidence(0.02) benign(0.116) TCGA-IB-7647-01 1 247655201 247655201 C T OR2W5 RNA 0.04 TCGA-IB-7647-01 1 248262826 248262826 T G OR2L13 Missense_Mutation p.V50G 0.04 deleterious(0.01) benign(0.082) TCGA-IB-7647-01 1 60330911 60330911 C A HOOK1 Missense_Mutation p.Q580K 0.04 tolerated(0.17) benign(0.229) TCGA-IB-7647-01 20 21492879 21492879 C T NKX2-2 Silent p.T168T 0.12 TCGA-IB-7647-01 20 50140613 50140613 G A NFATC2 Missense_Mutation p.S56F 0.05 deleterious(0) possibly_damaging(0.905) TCGA-IB-7647-01 20 62851191 62851191 C T MYT1 Silent p.D699D 0.09 TCGA-IB-7647-01 21 43999848 43999848 C T SLC37A1 Silent p.F508F 0.11 TCGA-IB-7647-01 22 16449649 16449649 C T OR11H1 Silent p.L52L 0.04 TCGA-IB-7647-01 2 105858390 105858390 G A GPR45 Silent p.G25G 0.06 TCGA-IB-7647-01 2 175300690 175300690 G A GPR155 3'UTR 0.09 TCGA-IB-7647-01 2 179464316 179464316 C A TTN Missense_Mutation p.G18771V 0.05 TCGA-IB-7647-01 2 179641506 179641506 A G TTN Silent p.Y1695Y 0.13 TCGA-IB-7647-01 2 26702178 26702178 C T OTOF Missense_Mutation p.R723H 0.13 tolerated(0.34) possibly_damaging(0.726) TCGA-IB-7647-01 2 85533483 85533483 A T TCF7L1 Nonsense_Mutation p.R382* 0.04 TCGA-IB-7647-01 3 151155325 151155325 G C IGSF10 Missense_Mutation p.P2342A 0.03 deleterious(0.05) probably_damaging(1) TCGA-IB-7647-01 3 178948163 178948163 A G PIK3CA Missense_Mutation p.R979G 0.12 tolerated(0.15) benign(0.268) TCGA-IB-7647-01 3 197707289 197707289 C T LMLN Silent p.Y214Y 0.03 TCGA-IB-7647-01 3 48677669 48677669 G A CELSR3 Missense_Mutation p.R3117W 0.14 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-IB-7647-01 4 100205883 100205883 A G ADH1A Silent p.L113L 0.15 TCGA-IB-7647-01 4 175224891 175224892 - A CEP44 Frame_Shift_Ins p.Q95Afs*17 0.13 TCGA-IB-7647-01 5 140176361 140176361 C T PCDHA2 Silent p.N604N 0.07 TCGA-IB-7647-01 6 7229287 7229288 - ACAC RREB1 Frame_Shift_Ins p.C321Hfs*3 0.16 TCGA-IB-7647-01 7 149129516 149129516 G A ZNF777 Missense_Mutation p.A616V 0.13 tolerated(0.46) benign(0.001) TCGA-IB-7647-01 7 93055621 93055621 C T CALCR 3'UTR 0.11 TCGA-IB-7647-01 7 94740662 94740662 G A PPP1R9A Missense_Mutation p.R496H 0.05 deleterious(0) possibly_damaging(0.767) TCGA-IB-7647-01 8 132051844 132051844 C T ADCY8 Missense_Mutation p.G246S 0.06 tolerated(0.24) possibly_damaging(0.724) TCGA-IB-7647-01 8 144698284 144698284 C T TSTA3 Missense_Mutation p.D85N 0.15 deleterious(0.01) possibly_damaging(0.77) TCGA-IB-7647-01 8 69358802 69358802 T G C8orf34 Intron 0.17 TCGA-IB-7647-01 8 86027446 86027446 G A LRRCC1 Missense_Mutation p.C219Y 0.12 tolerated(0.31) benign(0.064) TCGA-IB-7647-01 9 130575756 130575756 C T FPGS Missense_Mutation p.T546I 0.10 tolerated(0.2) benign(0.037) TCGA-IB-7647-01 9 135537950 135537950 C T DDX31 Missense_Mutation p.A175T 0.11 tolerated(0.39) benign(0.001) TCGA-IB-7647-01 9 18777015 18777015 G A ADAMTSL1 Missense_Mutation p.G930S 0.13 deleterious(0) probably_damaging(0.993) TCGA-IB-7647-01 X 135432097 135432097 G C GPR112 Missense_Mutation p.G2078R 0.06 tolerated(0.05) benign(0.347) TCGA-IB-7647-01 X 35820358 35820358 C T MAGEB16 Silent p.H15H 0.16 TCGA-IB-7647-01 X 35974224 35974224 G A CXorf22 Missense_Mutation p.E441K 0.08 tolerated(0.77) benign(0.001) TCGA-IB-7649-01 10 13534699 13534699 A T BEND7 Missense_Mutation p.L198Q 0.08 tolerated_low_confidence(0.61) benign(0.006) TCGA-IB-7649-01 10 73115969 73115969 T C SLC29A3 Missense_Mutation p.Y248H 0.03 deleterious(0.02) probably_damaging(0.948) TCGA-IB-7649-01 10 93711219 93711219 G C BTAF1 Missense_Mutation p.G154R 0.07 deleterious(0.02) possibly_damaging(0.498) TCGA-IB-7649-01 11 10597887 10597887 C A MRVI1 Nonsense_Mutation p.E911* 0.12 TCGA-IB-7649-01 11 107535878 107535878 G A ELMOD1 Silent p.A320A 0.18 TCGA-IB-7649-01 11 66468444 66468444 C G SPTBN2 Missense_Mutation p.E1042D 0.15 tolerated(0.16) benign(0.022) TCGA-IB-7649-01 11 68190978 68190978 A T LRP5 Missense_Mutation p.S1017C 0.15 tolerated(0.09) benign(0.289) TCGA-IB-7649-01 11 77937956 77937956 C T GAB2 Silent p.P254P 0.07 TCGA-IB-7649-01 12 25380275 25380275 T G KRAS Missense_Mutation p.Q61H 0.08 deleterious(0) benign(0.371) TCGA-IB-7649-01 12 58010135 58010135 C T ARHGEF25 Missense_Mutation p.P536S 0.14 tolerated(0.43) benign(0.006) TCGA-IB-7649-01 13 35883716 35883716 A G NBEA Missense_Mutation p.I1964V 0.07 tolerated(1) benign(0.007) TCGA-IB-7649-01 14 23870014 23870014 G C MYH6 Missense_Mutation p.N438K 0.06 tolerated(1) benign(0.115) TCGA-IB-7649-01 14 53558534 53558534 C T DDHD1 Missense_Mutation p.D420N 0.12 deleterious(0.04) benign(0.167) TCGA-IB-7649-01 15 74032751 74032751 G A C15orf59 Missense_Mutation p.S130L 0.13 tolerated(0.27) benign(0.001) TCGA-IB-7649-01 16 30749733 30749733 C T SRCAP Missense_Mutation p.P2791L 0.04 unknown(0) TCGA-IB-7649-01 16 69689654 69689654 C T NFAT5 Missense_Mutation p.T383I 0.05 probably_damaging(1) TCGA-IB-7649-01 17 15909860 15909860 A G TTC19 Silent p.E218E 0.15 TCGA-IB-7649-01 17 37334238 37334238 G T CACNB1 Missense_Mutation p.P382H 0.09 deleterious(0) probably_damaging(0.999) TCGA-IB-7649-01 17 7579311 7579311 C T TP53 Splice_Site p.X125_splice 0.13 TCGA-IB-7649-01 19 11596575 11596575 T C ZNF653 Missense_Mutation p.N489S 0.10 deleterious(0.01) possibly_damaging(0.493) TCGA-IB-7649-01 19 1257115 1257115 C A MIDN Missense_Mutation p.H417Q 0.08 tolerated(0.44) benign(0.227) TCGA-IB-7649-01 19 50000840 50000840 C T RPS11 Missense_Mutation p.R71W 0.12 tolerated(0.07) benign(0.026) TCGA-IB-7649-01 19 5455852 5455852 C T ZNRF4 Missense_Mutation p.P117L 0.03 deleterious(0) probably_damaging(0.995) TCGA-IB-7649-01 1 19609223 19609223 G C AKR7A3 3'UTR 0.13 TCGA-IB-7649-01 1 204587730 204587730 C T LRRN2 Missense_Mutation p.R464Q 0.08 deleterious(0.01) benign(0.085) TCGA-IB-7649-01 20 5903661 5903661 G A CHGB Missense_Mutation p.D291N 0.08 tolerated(0.25) benign(0.088) TCGA-IB-7649-01 2 127806138 127806138 G A BIN1 Silent p.G582G 0.07 TCGA-IB-7649-01 2 179429212 179429212 C T TTN Missense_Mutation p.R27216H 0.07 TCGA-IB-7649-01 2 26951301 26951301 C T KCNK3 Silent p.G350G 0.11 TCGA-IB-7649-01 2 3691377 3691377 G A COLEC11 Missense_Mutation p.R176H 0.10 deleterious(0.01) possibly_damaging(0.891) TCGA-IB-7649-01 2 96852425 96852425 G A STARD7 3'UTR 0.08 TCGA-IB-7649-01 3 130452457 130452457 T A PIK3R4 Missense_Mutation p.Y462F 0.13 deleterious(0) probably_damaging(0.997) TCGA-IB-7649-01 3 151164707 151164707 C T IGSF10 Missense_Mutation p.R1021Q 0.07 tolerated(0.08) probably_damaging(0.998) TCGA-IB-7649-01 3 165548002 165548002 A C BCHE Missense_Mutation p.L274V 0.12 deleterious(0) probably_damaging(0.969) TCGA-IB-7649-01 3 72893552 72893552 C T SHQ1 Missense_Mutation p.V56I 0.06 tolerated(0.18) benign(0.023) TCGA-IB-7649-01 4 126412333 126412333 G A FAT4 Missense_Mutation p.G4786R 0.09 probably_damaging(1) TCGA-IB-7649-01 5 140720422 140720422 G A PCDHGA2 Silent p.T628T 0.04 TCGA-IB-7649-01 6 26157290 26157290 G T HIST1H1E 3'UTR 0.17 TCGA-IB-7649-01 6 27100336 27100336 G A HIST1H2BJ Missense_Mutation p.S65L 0.06 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-IB-7649-01 6 78172557 78172557 A C HTR1B Silent p.R188R 0.04 TCGA-IB-7649-01 8 59404129 59404129 C G CYP7A1 Missense_Mutation p.A474P 0.09 tolerated(0.32) benign(0.002) TCGA-IB-7649-01 8 59490601 59490601 G T SDCBP Missense_Mutation p.V138F 0.10 deleterious(0) probably_damaging(0.982) TCGA-IB-7649-01 9 21971010 21971026 GTCCACGGGCAGACGGC - CDKN2A Frame_Shift_Del p.G111Afs*3 0.15 TCGA-IB-7649-01 X 47038526 47038526 C T RBM10 Nonsense_Mutation p.R230* 0.08 TCGA-IB-7649-01 X 5821413 5821413 G A NLGN4X Missense_Mutation p.R436W 0.08 deleterious(0) probably_damaging(0.999) TCGA-IB-7649-01 X 64719038 64719038 A T ZC3H12B Missense_Mutation p.D303V 0.08 deleterious(0) probably_damaging(1) TCGA-IB-7649-01 X 70367880 70367880 C T NLGN3 Missense_Mutation p.S94L 0.08 tolerated(0.14) possibly_damaging(0.763) TCGA-IB-7651-01 10 100015438 100015438 C T LOXL4 Missense_Mutation p.R496H 0.08 tolerated(0.36) benign(0.013) TCGA-IB-7651-01 10 100021971 100021971 C A LOXL4 Splice_Site p.X93_splice 0.19 TCGA-IB-7651-01 10 100152291 100152291 G A PYROXD2 Silent p.G320G 0.15 TCGA-IB-7651-01 10 100177447 100177447 G A HPS1 Silent p.T659T 0.18 TCGA-IB-7651-01 10 100503711 100503711 C T HPSE2 Missense_Mutation p.S238N 0.18 tolerated(0.1) benign(0.412) TCGA-IB-7651-01 10 101090473 101090473 C T CNNM1 Silent p.R443R 0.17 TCGA-IB-7651-01 10 101136957 101136957 C T CNNM1 Silent p.S774S 0.16 TCGA-IB-7651-01 10 101151259 101151259 C T CNNM1 Missense_Mutation p.P948S 0.12 deleterious_low_confidence(0.04) benign(0.288) TCGA-IB-7651-01 10 101180479 101180479 T G GOT1 Missense_Mutation p.N68H 0.19 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 10 101190246 101190246 C A GOT1 Missense_Mutation p.R26M 0.18 tolerated(0.05) benign(0.144) TCGA-IB-7651-01 10 101370678 101370678 G A SLC25A28 Silent p.I341I 0.10 TCGA-IB-7651-01 10 101460751 101460751 T G ENTPD7 Missense_Mutation p.S453A 0.21 tolerated(0.1) benign(0.092) TCGA-IB-7651-01 10 101473058 101473058 T C COX15 3'Flank 0.17 TCGA-IB-7651-01 10 101560322 101560322 T C ABCC2 Splice_Site p.X403_splice 0.19 TCGA-IB-7651-01 10 101604222 101604222 G T ABCC2 Missense_Mutation p.K1329N 0.18 deleterious(0) possibly_damaging(0.589) TCGA-IB-7651-01 10 101636806 101636806 C T DNMBP 3'UTR 0.11 TCGA-IB-7651-01 10 101646207 101646207 G T DNMBP Missense_Mutation p.N1156K 0.19 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 10 101654741 101654741 A G DNMBP Missense_Mutation p.F1040L 0.15 tolerated(0.07) probably_damaging(1) TCGA-IB-7651-01 10 101659757 101659757 T C DNMBP Missense_Mutation p.D874G 0.15 deleterious(0.01) probably_damaging(0.99) TCGA-IB-7651-01 10 101835819 101835819 G A CPN1 Missense_Mutation p.A90V 0.20 tolerated(1) benign(0.003) TCGA-IB-7651-01 10 101912014 101912014 G A ERLIN1 Silent p.F307F 0.22 TCGA-IB-7651-01 10 101964413 101964413 A G CHUK Silent p.L453L 0.20 TCGA-IB-7651-01 10 101996923 101996923 G T CWF19L1 Intron 0.08 TCGA-IB-7651-01 10 102055907 102055907 G T PKD2L1 Missense_Mutation p.A443D 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 102056007 102056007 C T PKD2L1 Missense_Mutation p.E410K 0.18 tolerated(0.37) benign(0.074) TCGA-IB-7651-01 10 102114262 102114262 C T SCD Nonsense_Mutation p.R174* 0.14 TCGA-IB-7651-01 10 102265204 102265204 G A SEC31B Missense_Mutation p.P365S 0.21 deleterious(0.04) benign(0.265) TCGA-IB-7651-01 10 102286192 102286192 G T NDUFB8 Nonsense_Mutation p.C144* 0.19 TCGA-IB-7651-01 10 102307967 102307967 G A HIF1AN 3'UTR 0.09 TCGA-IB-7651-01 10 102509502 102509502 G A PAX2 Splice_Site p.X15_splice 0.19 TCGA-IB-7651-01 10 102509561 102509561 C T PAX2 Silent p.P34P 0.18 TCGA-IB-7651-01 10 102584662 102584662 C T PAX2 Intron 0.18 TCGA-IB-7651-01 10 102684141 102684141 C T FAM178A Silent p.T461T 0.18 TCGA-IB-7651-01 10 102689733 102689733 C A FAM178A Missense_Mutation p.A771D 0.14 tolerated(0.17) probably_damaging(0.977) TCGA-IB-7651-01 10 102743421 102743421 C A SEMA4G Missense_Mutation p.L689I 0.14 deleterious(0.04) probably_damaging(0.998) TCGA-IB-7651-01 10 102743779 102743779 A G SEMA4G Missense_Mutation p.N808S 0.17 tolerated(0.07) benign(0.006) TCGA-IB-7651-01 10 102749183 102749183 C T C10orf2 Nonsense_Mutation p.R406* 0.18 TCGA-IB-7651-01 10 102763691 102763691 G A LZTS2 Missense_Mutation p.S279N 0.21 tolerated(0.23) benign(0.051) TCGA-IB-7651-01 10 102765260 102765260 C A LZTS2 Missense_Mutation p.L372M 0.20 deleterious(0.03) possibly_damaging(0.713) TCGA-IB-7651-01 10 102766458 102766458 C T LZTS2 Nonsense_Mutation p.R515* 0.20 TCGA-IB-7651-01 10 102766922 102766922 C A LZTS2 Silent p.I669I 0.10 TCGA-IB-7651-01 10 102777979 102777979 G T PDZD7 Missense_Mutation p.L467M 0.17 deleterious(0.01) probably_damaging(0.961) TCGA-IB-7651-01 10 102783309 102783309 C A PDZD7 Missense_Mutation p.E142D 0.19 tolerated(0.12) benign(0.246) TCGA-IB-7651-01 10 102988278 102988278 G T LBX1 Missense_Mutation p.L99M 0.32 deleterious(0.02) probably_damaging(0.947) TCGA-IB-7651-01 10 103285770 103285770 C A BTRC Missense_Mutation p.A186D 0.18 tolerated(0.43) benign(0.004) TCGA-IB-7651-01 10 103339447 103339447 G A POLL Silent p.S497S 0.09 TCGA-IB-7651-01 10 103342623 103342623 C T POLL Missense_Mutation p.R364H 0.22 tolerated(0.08) benign(0.016) TCGA-IB-7651-01 10 103347012 103347012 C A POLL Nonsense_Mutation p.E36* 0.18 TCGA-IB-7651-01 10 103369242 103369242 C A DPCD 3'UTR 0.20 TCGA-IB-7651-01 10 103427655 103427655 C A FBXW4 Missense_Mutation p.S253I 0.18 deleterious(0.01) possibly_damaging(0.804) TCGA-IB-7651-01 10 103542239 103542239 G A NPM3 Missense_Mutation p.P107L 0.17 deleterious(0.03) possibly_damaging(0.636) TCGA-IB-7651-01 10 103559127 103559127 G A MGEA5 Silent p.T427T 0.19 TCGA-IB-7651-01 10 103565854 103565854 A C MGEA5 Nonsense_Mutation p.Y233* 0.23 TCGA-IB-7651-01 10 103567613 103567613 T C MGEA5 Missense_Mutation p.I176V 0.19 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 10 103766356 103766356 A G C10orf76 Missense_Mutation p.V330A 0.19 tolerated(0.87) benign(0.001) TCGA-IB-7651-01 10 103783272 103783272 C T C10orf76 Missense_Mutation p.V211I 0.16 tolerated(0.37) benign(0.053) TCGA-IB-7651-01 10 103869426 103869426 C A LDB1 Missense_Mutation p.Q221H 0.15 tolerated(0.19) possibly_damaging(0.832) TCGA-IB-7651-01 10 103900616 103900616 A C PPRC1 Missense_Mutation p.E784A 0.21 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-IB-7651-01 10 103901019 103901019 C T PPRC1 Silent p.A918A 0.17 TCGA-IB-7651-01 10 103908623 103908623 G A PPRC1 Missense_Mutation p.R1556Q 0.15 deleterious(0.05) possibly_damaging(0.553) TCGA-IB-7651-01 10 103921395 103921395 T C NOLC1 Silent p.P608P 0.19 TCGA-IB-7651-01 10 103986348 103986348 T C ELOVL3 Missense_Mutation p.F15L 0.16 tolerated(0.87) benign(0.001) TCGA-IB-7651-01 10 103989015 103989015 T C ELOVL3 3'UTR 0.21 TCGA-IB-7651-01 10 103991721 103991721 G A PITX3 Silent p.S39S 0.08 TCGA-IB-7651-01 10 104121533 104121533 A G GBF1 Missense_Mutation p.E516G 0.15 deleterious(0) possibly_damaging(0.861) TCGA-IB-7651-01 10 104136495 104136495 C A GBF1 Missense_Mutation p.P1408H 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 10 104136509 104136509 C T GBF1 Missense_Mutation p.L1413F 0.18 tolerated(0.7) benign(0.444) TCGA-IB-7651-01 10 104142153 104142153 C A GBF1 3'UTR 0.21 TCGA-IB-7651-01 10 104156690 104156690 C T NFKB2 Silent p.I91I 0.19 TCGA-IB-7651-01 10 104183780 104183780 C T CUEDC2 Silent p.G189G 0.18 TCGA-IB-7651-01 10 104230514 104230514 C T TMEM180 Missense_Mutation p.A115V 0.21 tolerated(0.2) benign(0.008) TCGA-IB-7651-01 10 104352378 104352378 G T SUFU Missense_Mutation p.S165I 0.20 tolerated(0.1) possibly_damaging(0.624) TCGA-IB-7651-01 10 104416127 104416127 C T TRIM8 Missense_Mutation p.R345W 0.19 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-IB-7651-01 10 104594579 104594579 C A CYP17A1 Missense_Mutation p.S210I 0.16 deleterious(0.05) benign(0.015) TCGA-IB-7651-01 10 104620108 104620108 G A C10orf32 Missense_Mutation p.R54Q 0.17 tolerated(0.07) benign(0.179) TCGA-IB-7651-01 10 104650340 104650340 A G AS3MT Missense_Mutation p.I309V 0.21 tolerated(0.23) benign(0.012) TCGA-IB-7651-01 10 104679703 104679703 C T CNNM2 Missense_Mutation p.S489F 0.16 deleterious(0) probably_damaging(0.936) TCGA-IB-7651-01 10 104679834 104679834 G A CNNM2 Missense_Mutation p.A533T 0.10 tolerated(0.11) benign(0.066) TCGA-IB-7651-01 10 104836929 104836929 G A CNNM2 Missense_Mutation p.A874T 0.16 tolerated(0.07) benign(0.077) TCGA-IB-7651-01 10 105036934 105036934 G A INA 5'UTR 0.23 TCGA-IB-7651-01 10 105037253 105037253 G T INA Missense_Mutation p.K95N 0.12 deleterious(0) probably_damaging(0.975) TCGA-IB-7651-01 10 105152192 105152192 G A USMG5 Missense_Mutation p.A8V 0.17 tolerated(0.09) benign(0.105) TCGA-IB-7651-01 10 105164918 105164918 C A PDCD11 Missense_Mutation p.A181D 0.14 deleterious(0.01) possibly_damaging(0.521) TCGA-IB-7651-01 10 105172912 105172912 G T PDCD11 Missense_Mutation p.V340F 0.10 tolerated(0.06) benign(0.24) TCGA-IB-7651-01 10 105198541 105198541 T C PDCD11 Missense_Mutation p.I1334T 0.09 deleterious(0) benign(0.14) TCGA-IB-7651-01 10 105206962 105206962 C T CALHM2 Missense_Mutation p.A307T 0.22 tolerated(0.57) benign(0.001) TCGA-IB-7651-01 10 105207135 105207135 C T CALHM2 Missense_Mutation p.R249H 0.04 tolerated(0.06) benign(0.006) TCGA-IB-7651-01 10 105218206 105218206 G T CALHM1 Nonsense_Mutation p.C101* 0.19 TCGA-IB-7651-01 10 105218421 105218421 C T CALHM1 Missense_Mutation p.A30T 0.19 tolerated(0.07) probably_damaging(0.998) TCGA-IB-7651-01 10 105362601 105362601 G T SH3PXD2A Missense_Mutation p.L764I 0.18 tolerated(0.1) probably_damaging(0.997) TCGA-IB-7651-01 10 105362640 105362640 G A SH3PXD2A Missense_Mutation p.R751W 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 10 105363480 105363480 C T SH3PXD2A Missense_Mutation p.A471T 0.10 deleterious(0.01) probably_damaging(0.982) TCGA-IB-7651-01 10 105657393 105657393 C T OBFC1 Silent p.Q222Q 0.19 TCGA-IB-7651-01 10 105670293 105670293 C A OBFC1 Missense_Mutation p.S74I 0.18 tolerated(0.17) benign(0.151) TCGA-IB-7651-01 10 105761972 105761972 G A SLK Missense_Mutation p.A346T 0.17 tolerated(0.09) probably_damaging(0.999) TCGA-IB-7651-01 10 105779604 105779604 G A SLK Missense_Mutation p.R1082Q 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 105801279 105801279 C T COL17A1 Missense_Mutation p.G857S 0.14 probably_damaging(0.986) TCGA-IB-7651-01 10 105813871 105813871 G A COL17A1 Nonsense_Mutation p.R584* 0.17 TCGA-IB-7651-01 10 105836072 105836072 G T COL17A1 Silent p.R106R 0.21 TCGA-IB-7651-01 10 105927385 105927385 A G WDR96 Silent p.C934C 0.20 TCGA-IB-7651-01 10 105948089 105948089 C T WDR96 Silent p.S542S 0.20 TCGA-IB-7651-01 10 106037862 106037862 G A GSTO2 Silent p.E118E 0.15 TCGA-IB-7651-01 10 106058905 106058905 G A GSTO2 Missense_Mutation p.A199T 0.16 tolerated(0.16) benign(0.001) TCGA-IB-7651-01 10 106074778 106074778 C T ITPRIP Missense_Mutation p.M344I 0.17 tolerated(1) benign(0.002) TCGA-IB-7651-01 10 106075278 106075278 G T ITPRIP Missense_Mutation p.L178I 0.16 tolerated(0.62) benign(0.005) TCGA-IB-7651-01 10 106075312 106075312 G T ITPRIP Silent p.G166G 0.16 TCGA-IB-7651-01 10 106075652 106075652 A G ITPRIP Missense_Mutation p.L53S 0.18 tolerated(0.11) possibly_damaging(0.854) TCGA-IB-7651-01 10 106937871 106937871 C T SORCS3 Missense_Mutation p.S650L 0.19 tolerated(0.1) benign(0.002) TCGA-IB-7651-01 10 106959834 106959834 G A SORCS3 Missense_Mutation p.C696Y 0.18 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 10 107016608 107016608 C T SORCS3 Silent p.S1123S 0.17 TCGA-IB-7651-01 10 1088604 1088604 G A IDI1 Silent p.L169L 0.17 TCGA-IB-7651-01 10 108923970 108923970 G A SORCS1 Silent p.S105S 0.21 TCGA-IB-7651-01 10 111877175 111877175 A G ADD3 Missense_Mutation p.N188D 0.18 deleterious(0) possibly_damaging(0.7) TCGA-IB-7651-01 10 112328724 112328724 G T SMC3 Missense_Mutation p.R15I 0.15 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 10 112335133 112335133 G A SMC3 Missense_Mutation p.R57H 0.06 deleterious(0) probably_damaging(0.985) TCGA-IB-7651-01 10 112724738 112724738 G A SHOC2 Missense_Mutation p.E208K 0.15 tolerated(0.68) probably_damaging(0.937) TCGA-IB-7651-01 10 112771563 112771563 G A SHOC2 Missense_Mutation p.R579H 0.19 deleterious(0) benign(0.386) TCGA-IB-7651-01 10 112839042 112839042 G A ADRA2A Missense_Mutation p.G430S 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-IB-7651-01 10 11312657 11312657 T C CELF2 Missense_Mutation p.F216S 0.20 deleterious(0) possibly_damaging(0.799) TCGA-IB-7651-01 10 1132252 1132252 G C WDR37 Missense_Mutation p.E187Q 0.16 tolerated(0.07) probably_damaging(0.932) TCGA-IB-7651-01 10 11363230 11363230 C T CELF2 Missense_Mutation p.T392I 0.15 tolerated(0.09) benign(0.171) TCGA-IB-7651-01 10 113917132 113917132 C A GPAM Missense_Mutation p.D666Y 0.19 deleterious(0.01) possibly_damaging(0.907) TCGA-IB-7651-01 10 113928664 113928664 C T GPAM Missense_Mutation p.D281N 0.17 deleterious(0.01) probably_damaging(0.976) TCGA-IB-7651-01 10 113937793 113937793 A G GPAM Missense_Mutation p.I83T 0.17 tolerated(0.1) possibly_damaging(0.697) TCGA-IB-7651-01 10 114053586 114053586 G T TECTB Missense_Mutation p.G192W 0.19 deleterious(0.01) probably_damaging(0.99) TCGA-IB-7651-01 10 114053768 114053768 C T TECTB Missense_Mutation p.T207I 0.18 deleterious(0) probably_damaging(0.983) TCGA-IB-7651-01 10 114057903 114057903 C T TECTB Missense_Mutation p.R250W 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 114170354 114170354 G A ACSL5 Missense_Mutation p.E309K 0.15 deleterious(0.03) benign(0.06) TCGA-IB-7651-01 10 114190566 114190566 C T ZDHHC6 Missense_Mutation p.R413K 0.14 tolerated_low_confidence(0.31) benign(0.002) TCGA-IB-7651-01 10 114575062 114575062 C T VTI1A Missense_Mutation p.R192C 0.19 deleterious(0.02) probably_damaging(0.996) TCGA-IB-7651-01 10 114918429 114918429 A G TCF7L2 Intron 0.18 TCGA-IB-7651-01 10 11504924 11504924 C A USP6NL Missense_Mutation p.R685M 0.21 tolerated_low_confidence(0.05) possibly_damaging(0.882) TCGA-IB-7651-01 10 11523859 11523859 C T USP6NL Missense_Mutation p.D347N 0.12 tolerated(0.22) benign(0.03) TCGA-IB-7651-01 10 115345621 115345621 A C HABP2 Missense_Mutation p.Q481P 0.23 tolerated(0.06) benign(0.433) TCGA-IB-7651-01 10 115355411 115355411 C T NRAP Missense_Mutation p.A1503T 0.18 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 10 115365537 115365537 C A NRAP Missense_Mutation p.G1300V 0.18 tolerated(0.05) possibly_damaging(0.739) TCGA-IB-7651-01 10 115385861 115385861 A G NRAP Missense_Mutation p.V730A 0.17 deleterious(0) benign(0.405) TCGA-IB-7651-01 10 115485189 115485189 G A CASP7 Missense_Mutation p.V182I 0.16 tolerated(0.36) benign(0.003) TCGA-IB-7651-01 10 115527167 115527167 T G PLEKHS1 Missense_Mutation p.F90L 0.20 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 10 115636517 115636517 A G NHLRC2 Missense_Mutation p.Y190C 0.20 deleterious(0.02) benign(0.031) TCGA-IB-7651-01 10 115805121 115805121 C T ADRB1 Silent p.R410R 0.23 TCGA-IB-7651-01 10 115887367 115887367 G A C10orf118 Missense_Mutation p.A749V 0.13 tolerated(0.62) benign(0.007) TCGA-IB-7651-01 10 115904338 115904338 T G C10orf118 Missense_Mutation p.K380T 0.10 tolerated(0.05) probably_damaging(0.945) TCGA-IB-7651-01 10 115985896 115985896 C T TDRD1 Silent p.T1032T 0.20 TCGA-IB-7651-01 10 116092980 116092980 C A AFAP1L2 Missense_Mutation p.A74S 0.18 tolerated(0.15) benign(0.01) TCGA-IB-7651-01 10 116196108 116196108 G A ABLIM1 Missense_Mutation p.R750W 0.17 tolerated(0.18) benign(0.002) TCGA-IB-7651-01 10 116203826 116203826 G A ABLIM1 Missense_Mutation p.S632F 0.20 deleterious(0.01) benign(0.032) TCGA-IB-7651-01 10 116417899 116417899 C A ABLIM1 Missense_Mutation p.V21F 0.18 tolerated_low_confidence(0.07) benign(0.027) TCGA-IB-7651-01 10 116444123 116444123 C T ABLIM1 5'UTR 0.15 TCGA-IB-7651-01 10 116444156 116444156 G T ABLIM1 5'UTR 0.22 TCGA-IB-7651-01 10 116595962 116595962 C T FAM160B1 Missense_Mutation p.A160V 0.17 deleterious(0.01) benign(0.311) TCGA-IB-7651-01 10 116710908 116710908 G A TRUB1 Silent p.K147K 0.07 TCGA-IB-7651-01 10 116925332 116925332 G T ATRNL1 Missense_Mutation p.S340I 0.14 deleterious(0.03) possibly_damaging(0.671) TCGA-IB-7651-01 10 117024714 117024714 G T ATRNL1 Missense_Mutation p.D578Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 10 1175231 1175231 C T WDR37 Missense_Mutation p.R478W 0.16 deleterious(0) benign(0.249) TCGA-IB-7651-01 10 117856270 117856270 C T GFRA1 Missense_Mutation p.R259H 0.20 deleterious(0) probably_damaging(0.934) TCGA-IB-7651-01 10 117884933 117884933 C T GFRA1 Missense_Mutation p.R190H 0.22 tolerated(0.05) benign(0.283) TCGA-IB-7651-01 10 11797423 11797423 G A ECHDC3 Missense_Mutation p.R136Q 0.18 tolerated(1) benign(0.003) TCGA-IB-7651-01 10 11805264 11805264 C T ECHDC3 Silent p.A211A 0.18 TCGA-IB-7651-01 10 118231349 118231349 T C PNLIPRP3 Missense_Mutation p.V377A 0.14 deleterious(0) benign(0.262) TCGA-IB-7651-01 10 118307977 118307977 C A PNLIP Missense_Mutation p.L103M 0.18 deleterious(0.03) probably_damaging(0.981) TCGA-IB-7651-01 10 118353918 118353918 A C PNLIPRP1 Intron 0.15 TCGA-IB-7651-01 10 118380475 118380475 G A PNLIPRP2 5'UTR 0.21 TCGA-IB-7651-01 10 118385552 118385552 G A PNLIPRP2 Silent p.A100A 0.16 TCGA-IB-7651-01 10 118404618 118404618 G A PNLIPRP2 3'UTR 0.12 TCGA-IB-7651-01 10 118423620 118423620 C T C10orf82 3'UTR 0.25 TCGA-IB-7651-01 10 118434865 118434865 G A HSPA12A Silent p.A485A 0.22 TCGA-IB-7651-01 10 118458251 118458251 C A HSPA12A Splice_Site p.X148_splice 0.19 TCGA-IB-7651-01 10 118645867 118645867 G A KIAA1598 Silent p.S628S 0.12 TCGA-IB-7651-01 10 118671334 118671334 G A KIAA1598 Silent p.C442C 0.18 TCGA-IB-7651-01 10 118738812 118738812 G A KIAA1598 Silent p.G22G 0.13 TCGA-IB-7651-01 10 118738814 118738814 C A KIAA1598 Missense_Mutation p.G22C 0.13 tolerated(0.14) probably_damaging(0.999) TCGA-IB-7651-01 10 118891804 118891804 T - VAX1 3'Flank 0.12 TCGA-IB-7651-01 10 118896084 118896084 C A VAX1 Nonsense_Mutation p.E110* 0.21 TCGA-IB-7651-01 10 118960693 118960693 C T KCNK18 Missense_Mutation p.L83F 0.18 tolerated(0.08) benign(0.03) TCGA-IB-7651-01 10 119003516 119003516 G A SLC18A2 Silent p.K52K 0.19 TCGA-IB-7651-01 10 119003809 119003809 G A SLC18A2 Missense_Mutation p.G150E 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 119302963 119302963 G A EMX2 Missense_Mutation p.G62D 0.22 tolerated(0.06) benign(0.092) TCGA-IB-7651-01 10 119799769 119799769 G A RAB11FIP2 Nonsense_Mutation p.R221* 0.20 TCGA-IB-7651-01 10 11984744 11984744 C T UPF2 Missense_Mutation p.G1100S 0.17 tolerated(0.36) probably_damaging(0.997) TCGA-IB-7651-01 10 11997479 11997479 G A UPF2 Missense_Mutation p.R868C 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 120353797 120353797 G A PRLHR Silent p.C320C 0.23 TCGA-IB-7651-01 10 12070779 12070779 G A UPF2 Silent p.D370D 0.21 TCGA-IB-7651-01 10 120830529 120830529 G A EIF3A Missense_Mutation p.H204Y 0.20 deleterious(0) unknown(0) TCGA-IB-7651-01 10 121286924 121286924 C A RGS10 Missense_Mutation p.S21I 0.15 tolerated(0.13) benign(0.001) TCGA-IB-7651-01 10 121342012 121342012 C T TIAL1 Missense_Mutation p.A80T 0.18 tolerated(0.83) benign(0.21) TCGA-IB-7651-01 10 121429472 121429472 C A BAG3 Missense_Mutation p.P97H 0.06 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 10 121429651 121429651 G A BAG3 Missense_Mutation p.A157T 0.15 tolerated(0.15) benign(0.213) TCGA-IB-7651-01 10 121551041 121551041 C T INPP5F Missense_Mutation p.H110Y 0.17 deleterious(0) possibly_damaging(0.801) TCGA-IB-7651-01 10 121618597 121618597 A C MCMBP Missense_Mutation p.Y81D 0.16 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 10 121663749 121663749 G A SEC23IP Missense_Mutation p.R354Q 0.21 deleterious(0) possibly_damaging(0.904) TCGA-IB-7651-01 10 121692654 121692654 G A SEC23IP Missense_Mutation p.A966T 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 121692664 121692664 G A SEC23IP Missense_Mutation p.S969N 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 10 12197864 12197864 G A SEC61A2 Missense_Mutation p.A184T 0.18 deleterious(0.02) possibly_damaging(0.829) TCGA-IB-7651-01 10 12204260 12204260 G A SEC61A2 Missense_Mutation p.D406N 0.20 deleterious(0.02) possibly_damaging(0.654) TCGA-IB-7651-01 10 122619695 122619695 C A WDR11 Missense_Mutation p.L143I 0.18 tolerated(0.18) benign(0.241) TCGA-IB-7651-01 10 122626665 122626665 C A WDR11 Silent p.S426S 0.19 TCGA-IB-7651-01 10 122630757 122630757 C T WDR11 Missense_Mutation p.T457M 0.22 deleterious(0) benign(0.363) TCGA-IB-7651-01 10 122650367 122650367 C T WDR11 Missense_Mutation p.A828V 0.20 deleterious(0.02) benign(0.012) TCGA-IB-7651-01 10 12292401 12292401 G A CDC123 3'UTR 0.12 TCGA-IB-7651-01 10 1230812 1230812 G A ADARB2 Silent p.L678L 0.21 TCGA-IB-7651-01 10 123600741 123600741 C T ATE1 Missense_Mutation p.G338D 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 10 123661906 123661906 C A ATE1 Missense_Mutation p.E271D 0.17 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 10 123724800 123724800 C T NSMCE4A Splice_Site p.X251_splice 0.18 TCGA-IB-7651-01 10 123842275 123842275 C T TACC2 Missense_Mutation p.A87V 0.20 probably_damaging(0.998) TCGA-IB-7651-01 10 123842597 123842597 C T TACC2 Silent p.I194I 0.09 TCGA-IB-7651-01 10 123842859 123842859 G A TACC2 Missense_Mutation p.A282T 0.15 benign(0.343) TCGA-IB-7651-01 10 123843830 123843830 G A TACC2 Silent p.K605K 0.17 TCGA-IB-7651-01 10 124034607 124034607 C T BTBD16 Missense_Mutation p.S4L 0.16 tolerated(0.16) benign(0) TCGA-IB-7651-01 10 124152810 124152810 C A PLEKHA1 Missense_Mutation p.L32M 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 124333230 124333230 G T DMBT1 Splice_Site p.X79_splice 0.16 TCGA-IB-7651-01 10 124336170 124336170 G A DMBT1 Missense_Mutation p.S180N 0.08 tolerated(0.52) benign(0.267) TCGA-IB-7651-01 10 124395524 124395524 A C DMBT1 Missense_Mutation p.N2060T 0.22 tolerated(0.21) benign(0.22) TCGA-IB-7651-01 10 124457244 124457244 A C C10orf120 3'UTR 0.18 TCGA-IB-7651-01 10 124457595 124457595 T A C10orf120 Missense_Mutation p.D221V 0.20 tolerated(0.05) benign(0.256) TCGA-IB-7651-01 10 124457633 124457633 G A C10orf120 Silent p.A208A 0.18 TCGA-IB-7651-01 10 124591924 124591924 G T CUZD1 Missense_Mutation p.P565H 0.20 deleterious(0.01) possibly_damaging(0.717) TCGA-IB-7651-01 10 124594412 124594412 C T CUZD1 Missense_Mutation p.A398T 0.16 tolerated(0.36) probably_damaging(0.958) TCGA-IB-7651-01 10 124691977 124691977 T C C10orf88 Missense_Mutation p.D435G 0.18 deleterious(0.04) benign(0.009) TCGA-IB-7651-01 10 124692104 124692104 G A C10orf88 Missense_Mutation p.L393F 0.17 deleterious(0.01) benign(0.13) TCGA-IB-7651-01 10 124742796 124742796 G A PSTK Missense_Mutation p.G173S 0.17 tolerated(0.17) probably_damaging(0.979) TCGA-IB-7651-01 10 124800860 124800860 C T ACADSB Missense_Mutation p.L216F 0.16 tolerated(0.39) possibly_damaging(0.835) TCGA-IB-7651-01 10 124800885 124800885 A G ACADSB Missense_Mutation p.D224G 0.06 deleterious(0.02) possibly_damaging(0.457) TCGA-IB-7651-01 10 124909094 124909094 A G HMX2 Missense_Mutation p.K93E 0.19 deleterious(0.04) benign(0.057) TCGA-IB-7651-01 10 124919965 124919965 A C BUB3 Missense_Mutation p.T154P 0.18 deleterious(0.01) probably_damaging(0.957) TCGA-IB-7651-01 10 124923400 124923400 G A BUB3 3'UTR 0.10 TCGA-IB-7651-01 10 125426094 125426094 G A GPR26 Silent p.V57V 0.15 TCGA-IB-7651-01 10 125447554 125447554 C T GPR26 Nonsense_Mutation p.R298* 0.14 TCGA-IB-7651-01 10 125804220 125804220 C T CHST15 Silent p.P254P 0.20 TCGA-IB-7651-01 10 125804230 125804230 C T CHST15 Missense_Mutation p.R251H 0.22 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 10 126094013 126094013 C T OAT Missense_Mutation p.A214T 0.09 deleterious(0.01) possibly_damaging(0.902) TCGA-IB-7651-01 10 126100554 126100554 C A OAT Nonsense_Mutation p.E63* 0.18 TCGA-IB-7651-01 10 126681860 126681860 A C CTBP2 Missense_Mutation p.I857S 0.11 deleterious(0) probably_damaging(0.968) TCGA-IB-7651-01 10 12708741 12708741 G T CAMK1D Missense_Mutation p.K77N 0.18 tolerated(0.13) benign(0.044) TCGA-IB-7651-01 10 127417664 127417664 G A EDRF1 Silent p.E295E 0.13 TCGA-IB-7651-01 10 127421991 127421991 A G EDRF1 Missense_Mutation p.T383A 0.20 deleterious(0.01) benign(0.207) TCGA-IB-7651-01 10 127442353 127442353 C T EDRF1 Missense_Mutation p.R1162W 0.17 deleterious(0) possibly_damaging(0.857) TCGA-IB-7651-01 10 127456127 127456127 A G MMP21 Silent p.L462L 0.23 TCGA-IB-7651-01 10 127459093 127459093 C T MMP21 Silent p.E349E 0.18 TCGA-IB-7651-01 10 127461256 127461256 C T MMP21 Missense_Mutation p.R254H 0.20 tolerated(0.55) benign(0.022) TCGA-IB-7651-01 10 127503679 127503679 G A UROS Silent p.Y56Y 0.14 TCGA-IB-7651-01 10 127516166 127516166 G T BCCIP Missense_Mutation p.D94Y 0.20 deleterious(0) probably_damaging(0.981) TCGA-IB-7651-01 10 127529488 127529488 C T DHX32 Missense_Mutation p.E541K 0.21 deleterious(0.03) possibly_damaging(0.624) TCGA-IB-7651-01 10 127541841 127541841 G T BCCIP 3'UTR 0.19 TCGA-IB-7651-01 10 127542554 127542554 G A DHX32 Silent p.I356I 0.18 TCGA-IB-7651-01 10 127786984 127786984 C A ADAM12 Splice_Site p.X335_splice 0.20 TCGA-IB-7651-01 10 127806713 127806713 G A ADAM12 Missense_Mutation p.A169V 0.08 tolerated(0.24) benign(0.008) TCGA-IB-7651-01 10 12858268 12858268 C T CAMK1D Silent p.N258N 0.11 TCGA-IB-7651-01 10 128908593 128908593 C T DOCK1 Silent p.V845V 0.22 TCGA-IB-7651-01 10 128973575 128973575 A C FAM196A Missense_Mutation p.L362R 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 129160443 129160443 G A DOCK1 Silent p.Q1112Q 0.16 TCGA-IB-7651-01 10 129202634 129202634 C T DOCK1 Missense_Mutation p.P1334S 0.16 deleterious(0.01) possibly_damaging(0.874) TCGA-IB-7651-01 10 129224193 129224193 T C DOCK1 Missense_Mutation p.L1590P 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 10 129690991 129690991 A T CLRN3 Missense_Mutation p.S20T 0.18 tolerated(0.06) possibly_damaging(0.817) TCGA-IB-7651-01 10 129868066 129868066 A G PTPRE Missense_Mutation p.Q373R 0.16 deleterious(0.02) benign(0.039) TCGA-IB-7651-01 10 129901952 129901952 C T MKI67 Missense_Mutation p.A2718T 0.17 tolerated(1) benign(0.018) TCGA-IB-7651-01 10 129903573 129903573 G A MKI67 Silent p.S2177S 0.21 TCGA-IB-7651-01 10 129904345 129904345 A G MKI67 Missense_Mutation p.F1920S 0.16 tolerated(0.54) benign(0.206) TCGA-IB-7651-01 10 129905311 129905311 C T MKI67 Missense_Mutation p.R1598Q 0.20 deleterious(0.01) benign(0.003) TCGA-IB-7651-01 10 129905528 129905528 C T MKI67 Missense_Mutation p.A1526T 0.17 tolerated(0.27) possibly_damaging(0.606) TCGA-IB-7651-01 10 129906354 129906354 G T MKI67 Silent p.P1250P 0.17 TCGA-IB-7651-01 10 129907026 129907026 C T MKI67 Silent p.K1026K 0.21 TCGA-IB-7651-01 10 129914033 129914033 G A MKI67 Silent p.S213S 0.17 TCGA-IB-7651-01 10 1313190 1313190 G A ADARB2 Silent p.H384H 0.18 TCGA-IB-7651-01 10 131973336 131973336 G A GLRX3 Missense_Mutation p.G314R 0.14 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 10 13246275 13246275 C A MCM10 Nonsense_Mutation p.Y804* 0.22 TCGA-IB-7651-01 10 13276255 13276255 T G UCMA Missense_Mutation p.T2P 0.14 tolerated(0.12) possibly_damaging(0.558) TCGA-IB-7651-01 10 132891434 132891434 T G TCERG1L Missense_Mutation p.K584N 0.16 deleterious(0) possibly_damaging(0.497) TCGA-IB-7651-01 10 133058578 133058578 C T TCERG1L Missense_Mutation p.R267H 0.17 tolerated(0.09) benign(0.145) TCGA-IB-7651-01 10 13323092 13323092 C T PHYH Missense_Mutation p.A283T 0.18 deleterious(0.03) probably_damaging(0.935) TCGA-IB-7651-01 10 133784250 133784250 C T BNIP3 Missense_Mutation p.S144N 0.22 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 133955529 133955529 C T JAKMIP3 Silent p.L527L 0.15 TCGA-IB-7651-01 10 133962996 133962996 C A JAKMIP3 Nonsense_Mutation p.C643* 0.12 TCGA-IB-7651-01 10 134010555 134010555 C A DPYSL4 Missense_Mutation p.L191M 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 134012464 134012464 C T DPYSL4 Missense_Mutation p.A267V 0.22 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 134158066 134158066 C T LRRC27 Silent p.L155L 0.20 TCGA-IB-7651-01 10 134161812 134161812 C T LRRC27 Missense_Mutation p.A293V 0.18 deleterious(0) benign(0.001) TCGA-IB-7651-01 10 134188633 134188633 C T LRRC27 Nonsense_Mutation p.R494* 0.19 TCGA-IB-7651-01 10 134188732 134188732 C T LRRC27 Missense_Mutation p.R527C 0.15 tolerated_low_confidence(0.17) benign(0.066) TCGA-IB-7651-01 10 134188828 134188828 G A LRRC27 3'UTR 0.15 TCGA-IB-7651-01 10 134218335 134218335 G A PWWP2B Missense_Mutation p.A111T 0.20 tolerated(0.87) benign(0.005) TCGA-IB-7651-01 10 134219145 134219145 T C PWWP2B Missense_Mutation p.S381P 0.22 deleterious(0.05) benign(0.42) TCGA-IB-7651-01 10 134219225 134219225 C T PWWP2B Silent p.L407L 0.20 TCGA-IB-7651-01 10 134230748 134230748 C T PWWP2B 3'UTR 0.21 TCGA-IB-7651-01 10 134563063 134563063 G A INPP5A Missense_Mutation p.D259N 0.15 tolerated(0.53) probably_damaging(0.948) TCGA-IB-7651-01 10 134591331 134591331 C T INPP5A Intron 0.13 TCGA-IB-7651-01 10 134598469 134598469 T G NKX6-2 Missense_Mutation p.N262T 0.17 tolerated_low_confidence(0.14) benign(0.005) TCGA-IB-7651-01 10 134622044 134622044 G A TTC40 Missense_Mutation p.R2677W 0.23 tolerated_low_confidence(0.12) benign(0) TCGA-IB-7651-01 10 134622314 134622314 C A TTC40 Missense_Mutation p.A2587S 0.08 tolerated_low_confidence(0.23) benign(0.023) TCGA-IB-7651-01 10 134623955 134623955 G A TTC40 Missense_Mutation p.A2541V 0.04 tolerated_low_confidence(0.13) benign(0.045) TCGA-IB-7651-01 10 134627697 134627697 C T TTC40 Silent p.T2449T 0.15 TCGA-IB-7651-01 10 134743011 134743011 C T TTC40 Intron 0.11 TCGA-IB-7651-01 10 134743101 134743101 C T TTC40 Intron 0.15 TCGA-IB-7651-01 10 13489312 13489312 G A BEND7 Silent p.I345I 0.11 TCGA-IB-7651-01 10 134893885 134893885 C A GPR123-AS1 3'Flank 0.33 TCGA-IB-7651-01 10 134942098 134942098 C T GPR123 Silent p.L256L 0.09 TCGA-IB-7651-01 10 134942239 134942239 C T GPR123 Missense_Mutation p.L303F 0.20 deleterious(0) probably_damaging(0.963) TCGA-IB-7651-01 10 134942485 134942485 G C GPR123 Missense_Mutation p.A385P 0.10 tolerated(0.1) possibly_damaging(0.897) TCGA-IB-7651-01 10 134942923 134942923 C T GPR123 Missense_Mutation p.P531S 0.11 tolerated(0.19) benign(0.084) TCGA-IB-7651-01 10 134943032 134943032 C T GPR123 3'UTR 0.19 TCGA-IB-7651-01 10 134996942 134996942 C T KNDC1 Missense_Mutation p.A152V 0.15 tolerated(0.2) benign(0.015) TCGA-IB-7651-01 10 134999981 134999981 C A KNDC1 Missense_Mutation p.P377T 0.21 tolerated(0.46) benign(0.015) TCGA-IB-7651-01 10 135015230 135015230 C A KNDC1 Missense_Mutation p.S1072Y 0.22 tolerated(0.17) benign(0.028) TCGA-IB-7651-01 10 135025297 135025297 G A KNDC1 Missense_Mutation p.E1391K 0.20 tolerated(0.06) benign(0.069) TCGA-IB-7651-01 10 135032456 135032456 C A KNDC1 Missense_Mutation p.P1600H 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 10 135044157 135044157 A G UTF1 Missense_Mutation p.K122R 0.22 tolerated(0.19) benign(0.444) TCGA-IB-7651-01 10 135044789 135044789 C T UTF1 Missense_Mutation p.A290V 0.15 tolerated_low_confidence(1) possibly_damaging(0.499) TCGA-IB-7651-01 10 135051472 135051472 C T VENTX Silent p.G18G 0.20 TCGA-IB-7651-01 10 135051528 135051528 C A VENTX Missense_Mutation p.P37H 0.23 deleterious(0) possibly_damaging(0.816) TCGA-IB-7651-01 10 135085191 135085191 C T ADAM8 Missense_Mutation p.M375I 0.12 tolerated(0.24) benign(0.012) TCGA-IB-7651-01 10 135086319 135086319 C T ADAM8 Missense_Mutation p.V230M 0.16 deleterious(0) probably_damaging(0.979) TCGA-IB-7651-01 10 135095825 135095825 A G TUBGCP2 Silent p.L799L 0.18 TCGA-IB-7651-01 10 135095846 135095846 T G TUBGCP2 Missense_Mutation p.K792Q 0.17 tolerated(0.08) benign(0.062) TCGA-IB-7651-01 10 135103451 135103451 C T TUBGCP2 Missense_Mutation p.E441K 0.21 deleterious(0.01) benign(0.063) TCGA-IB-7651-01 10 135160877 135160877 A G PRAP1 5'UTR 0.23 TCGA-IB-7651-01 10 135211958 135211958 A C MTG1 Missense_Mutation p.E101A 0.19 tolerated(0.14) benign(0.019) TCGA-IB-7651-01 10 135233564 135233564 G A MTG1 Silent p.A300A 0.18 TCGA-IB-7651-01 10 135345639 135345639 G A CYP2E1 Missense_Mutation p.D167N 0.07 tolerated(0.1) benign(0.101) TCGA-IB-7651-01 10 13542030 13542030 G T BEND7 Missense_Mutation p.L14M 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IB-7651-01 10 135438745 135438745 G T FRG2B Missense_Mutation p.A232D 0.14 deleterious(0) possibly_damaging(0.624) TCGA-IB-7651-01 10 13699307 13699307 G A FRMD4A Missense_Mutation p.P761L 0.17 tolerated(0.06) probably_damaging(0.998) TCGA-IB-7651-01 10 13743470 13743470 A G FRMD4A Missense_Mutation p.V282A 0.17 deleterious(0.05) probably_damaging(0.962) TCGA-IB-7651-01 10 1405926 1405926 G A ADARB2 Missense_Mutation p.A125V 0.30 tolerated(0.17) benign(0.273) TCGA-IB-7651-01 10 14816459 14816459 G A FAM107B Silent p.S68S 0.20 TCGA-IB-7651-01 10 14939493 14939493 T G SUV39H2 Missense_Mutation p.F276V 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 14939500 14939500 T C SUV39H2 Missense_Mutation p.M278T 0.16 tolerated(0.13) probably_damaging(0.993) TCGA-IB-7651-01 10 15138848 15138848 G A C10orf111 5'UTR 0.12 TCGA-IB-7651-01 10 15145661 15145661 C T RPP38 Silent p.G116G 0.21 TCGA-IB-7651-01 10 15161458 15161458 G A NMT2 Nonsense_Mutation p.R352* 0.18 TCGA-IB-7651-01 10 15174860 15174860 G A NMT2 Silent p.V225V 0.11 TCGA-IB-7651-01 10 15573078 15573078 G A ITGA8 Missense_Mutation p.P985S 0.04 tolerated(0.07) possibly_damaging(0.78) TCGA-IB-7651-01 10 1569013 1569013 G A ADARB2 Intron 0.17 TCGA-IB-7651-01 10 1569038 1569038 A T ADARB2 Intron 0.18 TCGA-IB-7651-01 10 15697376 15697376 G A ITGA8 Silent p.V326V 0.16 TCGA-IB-7651-01 10 15729956 15729956 G T ITGA8 Missense_Mutation p.A142D 0.20 deleterious(0.03) probably_damaging(0.951) TCGA-IB-7651-01 10 15820920 15820920 G T FAM188A 3'UTR 0.27 TCGA-IB-7651-01 10 16556570 16556570 T C C1QL3 Missense_Mutation p.N242S 0.05 deleterious(0.03) possibly_damaging(0.579) TCGA-IB-7651-01 10 16556588 16556588 G T C1QL3 Missense_Mutation p.A236D 0.17 deleterious(0.05) possibly_damaging(0.475) TCGA-IB-7651-01 10 16562739 16562739 C T C1QL3 Missense_Mutation p.G109D 0.07 deleterious(0.02) benign(0.008) TCGA-IB-7651-01 10 16877056 16877056 A C CUBN Missense_Mutation p.L3440R 0.17 deleterious(0) possibly_damaging(0.507) TCGA-IB-7651-01 10 16877137 16877137 T G CUBN Missense_Mutation p.D3413A 0.18 tolerated(0.34) benign(0.005) TCGA-IB-7651-01 10 16878269 16878269 C A CUBN Missense_Mutation p.R3382I 0.20 tolerated(0.22) benign(0.004) TCGA-IB-7651-01 10 16946075 16946075 G T CUBN Missense_Mutation p.P2651H 0.19 tolerated(0.2) benign(0.008) TCGA-IB-7651-01 10 16949516 16949516 C T CUBN Missense_Mutation p.E2566K 0.18 deleterious(0.01) possibly_damaging(0.839) TCGA-IB-7651-01 10 17113893 17113893 A G CUBN Silent p.S793S 0.19 TCGA-IB-7651-01 10 17113900 17113900 G A CUBN Missense_Mutation p.T791I 0.10 deleterious(0.01) possibly_damaging(0.694) TCGA-IB-7651-01 10 17210891 17210891 C A TRDMT1 Missense_Mutation p.R67I 0.15 deleterious(0.01) benign(0.116) TCGA-IB-7651-01 10 17276772 17276772 A G VIM Silent p.R321R 0.15 TCGA-IB-7651-01 10 17277377 17277377 C A VIM Silent p.G406G 0.18 TCGA-IB-7651-01 10 17636234 17636234 G T PTPLA Missense_Mutation p.L252I 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 10 17636369 17636370 - A PTPLA Frame_Shift_Ins p.I207Yfs*11 0.12 TCGA-IB-7651-01 10 17730057 17730057 C T STAM Missense_Mutation p.A110V 0.17 deleterious(0.03) benign(0.144) TCGA-IB-7651-01 10 17747711 17747711 A G STAM Missense_Mutation p.M394V 0.17 tolerated(0.5) benign(0.001) TCGA-IB-7651-01 10 17750861 17750861 G A STAM Silent p.P432P 0.20 TCGA-IB-7651-01 10 1779419 1779419 G A ADARB2 5'UTR 0.21 TCGA-IB-7651-01 10 18250690 18250690 C T SLC39A12 Silent p.L148L 0.18 TCGA-IB-7651-01 10 18284597 18284597 G A SLC39A12 Missense_Mutation p.D516N 0.18 deleterious(0.04) possibly_damaging(0.633) TCGA-IB-7651-01 10 18689859 18689859 G T CACNB2 Intron 0.12 TCGA-IB-7651-01 10 18807857 18807857 A C CACNB2 Missense_Mutation p.K302Q 0.17 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 10 18823122 18823122 C A CACNB2 Missense_Mutation p.P391H 0.14 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 18828262 18828262 G A CACNB2 Missense_Mutation p.R531H 0.17 tolerated_low_confidence(0.09) probably_damaging(0.932) TCGA-IB-7651-01 10 18828568 18828568 G A CACNB2 Missense_Mutation p.R633H 0.16 tolerated_low_confidence(0.07) benign(0.009) TCGA-IB-7651-01 10 20290821 20290821 C T PLXDC2 Missense_Mutation p.T77M 0.20 deleterious(0.01) possibly_damaging(0.79) TCGA-IB-7651-01 10 20432253 20432253 C T PLXDC2 Nonsense_Mutation p.R191* 0.16 TCGA-IB-7651-01 10 21178809 21178809 T G NEBL Missense_Mutation p.N75H 0.17 tolerated(0.13) possibly_damaging(0.548) TCGA-IB-7651-01 10 21309118 21309118 C T NEBL Silent p.K25K 0.21 TCGA-IB-7651-01 10 21962743 21962743 T C MLLT10 Missense_Mutation p.S506P 0.24 tolerated(0.07) possibly_damaging(0.762) TCGA-IB-7651-01 10 22019972 22019972 C T MLLT10 Missense_Mutation p.T736I 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 10 22022979 22022979 T C MLLT10 Missense_Mutation p.S927P 0.19 tolerated(0.28) benign(0) TCGA-IB-7651-01 10 22048251 22048251 C T DNAJC1 Missense_Mutation p.E482K 0.19 tolerated(0.07) benign(0.018) TCGA-IB-7651-01 10 22618434 22618434 C A COMMD3-BMI1 Nonsense_Mutation p.S458* 0.17 TCGA-IB-7651-01 10 22678185 22678185 C A SPAG6 Missense_Mutation p.L317I 0.10 tolerated(0.22) probably_damaging(0.998) TCGA-IB-7651-01 10 22699988 22699988 G A SPAG6 Missense_Mutation p.R448Q 0.17 deleterious(0.03) benign(0.086) TCGA-IB-7651-01 10 23287078 23287078 G A ARMC3 Missense_Mutation p.A393T 0.18 tolerated(0.07) possibly_damaging(0.804) TCGA-IB-7651-01 10 23287157 23287157 C G ARMC3 Missense_Mutation p.A419G 0.20 deleterious(0) possibly_damaging(0.882) TCGA-IB-7651-01 10 23287286 23287286 C A ARMC3 Missense_Mutation p.A462D 0.17 deleterious(0) benign(0.112) TCGA-IB-7651-01 10 23321797 23321797 G A ARMC3 Missense_Mutation p.A752T 0.17 deleterious(0.01) possibly_damaging(0.85) TCGA-IB-7651-01 10 23326238 23326238 C T ARMC3 Missense_Mutation p.R817C 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 23409785 23409785 A C MSRB2 Missense_Mutation p.K181N 0.17 deleterious(0) benign(0.13) TCGA-IB-7651-01 10 23481479 23481479 A T PTF1A Missense_Mutation p.E7V 0.14 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-IB-7651-01 10 24498026 24498026 C T KIAA1217 5'Flank 0.23 TCGA-IB-7651-01 10 24508579 24508579 T C KIAA1217 Missense_Mutation p.V32A 0.20 deleterious(0) possibly_damaging(0.719) TCGA-IB-7651-01 10 24783453 24783453 A G KIAA1217 Silent p.K568K 0.17 TCGA-IB-7651-01 10 24820880 24820880 C T KIAA1217 Silent p.G1068G 0.09 TCGA-IB-7651-01 10 24832433 24832433 C T KIAA1217 Nonsense_Mutation p.Q1412* 0.17 TCGA-IB-7651-01 10 24880606 24880606 A C ARHGAP21 Missense_Mutation p.W1337G 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 24880896 24880896 G A ARHGAP21 Nonsense_Mutation p.R1308* 0.16 TCGA-IB-7651-01 10 24889643 24889643 C T ARHGAP21 Missense_Mutation p.A1022T 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 10 24909750 24909750 G A ARHGAP21 Silent p.I358I 0.18 TCGA-IB-7651-01 10 24910055 24910055 C T ARHGAP21 Missense_Mutation p.V257I 0.18 tolerated(0.48) benign(0.004) TCGA-IB-7651-01 10 24911659 24911659 T C ARHGAP21 Intron 0.19 TCGA-IB-7651-01 10 25273753 25273753 G A ENKUR Missense_Mutation p.R226C 0.18 deleterious(0.01) probably_damaging(0.977) TCGA-IB-7651-01 10 25886972 25886972 C T GPR158 Missense_Mutation p.T806I 0.18 deleterious(0) benign(0.066) TCGA-IB-7651-01 10 25887906 25887906 C T GPR158 Silent p.S1117S 0.15 TCGA-IB-7651-01 10 26305807 26305807 G A MYO3A Silent p.P189P 0.16 TCGA-IB-7651-01 10 26432413 26432413 A T MYO3A Missense_Mutation p.I767F 0.19 deleterious(0) probably_damaging(0.949) TCGA-IB-7651-01 10 26443677 26443677 C T MYO3A Silent p.G906G 0.21 TCGA-IB-7651-01 10 26462912 26462912 A G MYO3A Missense_Mutation p.Y1240C 0.19 tolerated_low_confidence(0.17) benign(0.001) TCGA-IB-7651-01 10 26559594 26559594 C T GAD2 Missense_Mutation p.A334V 0.04 deleterious(0.01) possibly_damaging(0.522) TCGA-IB-7651-01 10 26939577 26939577 A G LINC00202-2 RNA 0.20 TCGA-IB-7651-01 10 27313378 27313378 A C ANKRD26 Silent p.T1361T 0.15 TCGA-IB-7651-01 10 27313399 27313399 A G ANKRD26 Silent p.V1354V 0.16 TCGA-IB-7651-01 10 27382725 27382725 C T ANKRD26 Silent p.T82T 0.19 TCGA-IB-7651-01 10 27436510 27436510 C T YME1L1 Missense_Mutation p.E86K 0.15 tolerated_low_confidence(0.75) benign(0) TCGA-IB-7651-01 10 27459101 27459101 G A MASTL Missense_Mutation p.D405N 0.18 tolerated(0.36) benign(0.013) TCGA-IB-7651-01 10 27497259 27497259 G A ACBD5 Silent p.I440I 0.08 TCGA-IB-7651-01 10 27687219 27687219 G A PTCHD3 3'UTR 0.20 TCGA-IB-7651-01 10 27692284 27692284 A C PTCHD3 Missense_Mutation p.F405C 0.15 tolerated(0.44) benign(0.003) TCGA-IB-7651-01 10 27964176 27964176 C T MKX Silent p.P347P 0.16 TCGA-IB-7651-01 10 28345483 28345483 G A MPP7 Missense_Mutation p.R493C 0.08 tolerated(0.07) benign(0.16) TCGA-IB-7651-01 10 28822471 28822472 - C WAC 5'UTR 0.10 TCGA-IB-7651-01 10 28878735 28878735 G A WAC Missense_Mutation p.R151Q 0.19 tolerated(0.06) benign(0.089) TCGA-IB-7651-01 10 28897207 28897207 A G WAC Missense_Mutation p.T338A 0.10 tolerated_low_confidence(0.27) benign(0.015) TCGA-IB-7651-01 10 28970438 28970438 C T BAMBI Missense_Mutation p.H110Y 0.14 tolerated(1) benign(0.003) TCGA-IB-7651-01 10 28970998 28970998 C T BAMBI Missense_Mutation p.R151W 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 10 294415 294415 A G ZMYND11 Missense_Mutation p.Q456R 0.15 deleterious(0.01) probably_damaging(0.983) TCGA-IB-7651-01 10 295039 295039 G T ZMYND11 Intron 0.16 TCGA-IB-7651-01 10 29754582 29754582 G T SVIL Silent p.P2025P 0.16 TCGA-IB-7651-01 10 29762878 29762878 G A SVIL Silent p.A1806A 0.15 TCGA-IB-7651-01 10 29769596 29769596 G A SVIL Silent p.I1749I 0.18 TCGA-IB-7651-01 10 29779902 29779902 G A SVIL Missense_Mutation p.R1356C 0.16 deleterious(0) probably_damaging(0.97) TCGA-IB-7651-01 10 29891241 29891241 C A SVIL Intron 0.26 TCGA-IB-7651-01 10 30315241 30315241 G A KIAA1462 Missense_Mutation p.A1279V 0.08 deleterious(0.02) possibly_damaging(0.487) TCGA-IB-7651-01 10 30315768 30315768 G A KIAA1462 Silent p.I1103I 0.23 TCGA-IB-7651-01 10 30316752 30316752 C T KIAA1462 Silent p.P775P 0.18 TCGA-IB-7651-01 10 30316881 30316881 C T KIAA1462 Silent p.T732T 0.06 TCGA-IB-7651-01 10 30602406 30602406 C T MTPAP 3'UTR 0.15 TCGA-IB-7651-01 10 30611535 30611535 G A MTPAP Missense_Mutation p.T335I 0.23 deleterious(0.01) benign(0.112) TCGA-IB-7651-01 10 30629378 30629378 C T MTPAP Missense_Mutation p.G111D 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 10 30658538 30658538 C T AL161651.1 5'Flank 0.42 TCGA-IB-7651-01 10 30747153 30747153 C T MAP3K8 Silent p.S338S 0.08 TCGA-IB-7651-01 10 30749820 30749820 C A MAP3K8 3'UTR 0.19 TCGA-IB-7651-01 10 31138175 31138175 G A ZNF438 Missense_Mutation p.R387W 0.19 tolerated(0.11) benign(0.011) TCGA-IB-7651-01 10 3143110 3143110 C T PFKP Intron 0.19 TCGA-IB-7651-01 10 31810297 31810297 A C ZEB1 Missense_Mutation p.Q679H 0.19 tolerated(0.12) benign(0.004) TCGA-IB-7651-01 10 31815766 31815766 C T ZEB1 Silent p.Y984Y 0.21 TCGA-IB-7651-01 10 3189841 3189841 G A PITRM1 Silent p.L721L 0.08 TCGA-IB-7651-01 10 3191914 3191914 C T PITRM1 Silent p.Q590Q 0.17 TCGA-IB-7651-01 10 3205979 3205979 C T PITRM1 Silent p.P243P 0.18 TCGA-IB-7651-01 10 3206051 3206051 C A PITRM1 Missense_Mutation p.Q219H 0.19 deleterious(0.03) benign(0.236) TCGA-IB-7651-01 10 32099638 32099638 C A ARHGAP12 Missense_Mutation p.Q663H 0.13 tolerated(0.13) benign(0.035) TCGA-IB-7651-01 10 32320176 32320176 T C KIF5B Missense_Mutation p.N469S 0.14 tolerated(0.21) benign(0.026) TCGA-IB-7651-01 10 32560500 32560500 G T EPC1 Missense_Mutation p.S807Y 0.18 deleterious(0.01) benign(0.197) TCGA-IB-7651-01 10 32560597 32560597 G A EPC1 Nonsense_Mutation p.R775* 0.17 TCGA-IB-7651-01 10 32635840 32635840 T C EPC1 Missense_Mutation p.S2G 0.20 deleterious(0) probably_damaging(0.977) TCGA-IB-7651-01 10 32978017 32978017 G T C10ORF68 Missense_Mutation p.R64M 0.19 tolerated(0.07) benign(0.417) TCGA-IB-7651-01 10 32983848 32983848 C T C10ORF68 Nonsense_Mutation p.Q103* 0.17 TCGA-IB-7651-01 10 33113457 33113457 C T C10ORF68 Nonsense_Mutation p.R336* 0.18 TCGA-IB-7651-01 10 33135307 33135307 C T C10ORF68 Missense_Mutation p.T446I 0.15 tolerated(0.24) benign(0.019) TCGA-IB-7651-01 10 33495125 33495125 G A NRP1 Intron 0.14 TCGA-IB-7651-01 10 34400149 34400149 G A PARD3 Missense_Mutation p.A1340V 0.19 tolerated_low_confidence(0.17) possibly_damaging(0.703) TCGA-IB-7651-01 10 34985290 34985290 C T PARD3 Missense_Mutation p.D60N 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 35500811 35500811 C A CREM 3'UTR 0.29 TCGA-IB-7651-01 10 35841947 35841947 G A CCNY Missense_Mutation p.V194M 0.19 deleterious(0) possibly_damaging(0.854) TCGA-IB-7651-01 10 35842011 35842011 T C CCNY Missense_Mutation p.I215T 0.20 deleterious(0) possibly_damaging(0.601) TCGA-IB-7651-01 10 35896742 35896742 G A GJD4 Missense_Mutation p.A101T 0.19 tolerated(0.1) benign(0.164) TCGA-IB-7651-01 10 35897020 35897020 G T GJD4 Missense_Mutation p.E193D 0.11 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 10 35929686 35929686 G A FZD8 Silent p.G224G 0.11 TCGA-IB-7651-01 10 37441021 37441021 A G ANKRD30A Missense_Mutation p.D504G 0.17 deleterious(0.02) benign(0.089) TCGA-IB-7651-01 10 37486234 37486234 C T ANKRD30A Silent p.F824F 0.09 TCGA-IB-7651-01 10 3823892 3823892 C T KLF6 Missense_Mutation p.G206D 0.18 deleterious(0.01) unknown(0) TCGA-IB-7651-01 10 38343685 38343685 G T ZNF33A Missense_Mutation p.K211N 0.14 tolerated(0.07) benign(0.283) TCGA-IB-7651-01 10 38344716 38344716 G A ZNF33A Missense_Mutation p.C555Y 0.21 deleterious(0.03) probably_damaging(1) TCGA-IB-7651-01 10 38403694 38403694 G A ZNF37A Silent p.S9S 0.19 TCGA-IB-7651-01 10 38406336 38406336 G T ZNF37A Missense_Mutation p.R86I 0.17 tolerated(0.2) benign(0.202) TCGA-IB-7651-01 10 38407455 38407455 G A ZNF37A Missense_Mutation p.R459K 0.17 tolerated(0.07) probably_damaging(0.984) TCGA-IB-7651-01 10 395299 395299 G A DIP2C Silent p.G1027G 0.06 TCGA-IB-7651-01 10 395334 395334 C T DIP2C Missense_Mutation p.V1016M 0.14 tolerated(0.2) benign(0.376) TCGA-IB-7651-01 10 410353 410353 G A DIP2C Missense_Mutation p.A813V 0.17 tolerated(1) benign(0.1) TCGA-IB-7651-01 10 410407 410407 C T DIP2C Missense_Mutation p.G795D 0.19 tolerated(0.06) probably_damaging(0.985) TCGA-IB-7651-01 10 410494 410494 G A DIP2C Missense_Mutation p.P766L 0.16 tolerated(0.1) benign(0.02) TCGA-IB-7651-01 10 43015757 43015757 T G ZNF37BP RNA 0.23 TCGA-IB-7651-01 10 43019169 43019169 C T ZNF37BP RNA 0.17 TCGA-IB-7651-01 10 43088932 43088932 C A ZNF33B Missense_Mutation p.R489I 0.19 deleterious(0.02) benign(0.017) TCGA-IB-7651-01 10 43315745 43315745 G A BMS1 Missense_Mutation p.R881Q 0.19 deleterious(0.03) possibly_damaging(0.573) TCGA-IB-7651-01 10 43596002 43596002 C T RET Missense_Mutation p.R57W 0.16 deleterious_low_confidence(0) possibly_damaging(0.624) TCGA-IB-7651-01 10 43601943 43601943 C A RET Missense_Mutation p.F329L 0.11 tolerated(0.11) probably_damaging(0.968) TCGA-IB-7651-01 10 43612162 43612162 C A RET Missense_Mutation p.A756D 0.04 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 43613844 43613844 C T RET Nonsense_Mutation p.R770* 0.15 TCGA-IB-7651-01 10 43615116 43615116 C T RET Missense_Mutation p.R844W 0.13 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 10 43623580 43623580 C T RET Missense_Mutation p.P1070S 0.16 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-IB-7651-01 10 43650908 43650908 C T CSGALNACT2 Missense_Mutation p.A104V 0.17 tolerated(0.49) benign(0.006) TCGA-IB-7651-01 10 43691614 43691614 T C RASGEF1A 3'UTR 0.22 TCGA-IB-7651-01 10 43691985 43691985 C T RASGEF1A Missense_Mutation p.A454T 0.16 deleterious(0) benign(0.356) TCGA-IB-7651-01 10 43694616 43694616 G A RASGEF1A Silent p.R292R 0.20 TCGA-IB-7651-01 10 43882434 43882434 G A HNRNPF Missense_Mutation p.A300V 0.18 deleterious(0.03) probably_damaging(0.936) TCGA-IB-7651-01 10 43882502 43882502 G A HNRNPF Silent p.G277G 0.19 TCGA-IB-7651-01 10 44052679 44052679 G A ZNF239 Silent p.A283A 0.18 TCGA-IB-7651-01 10 44053102 44053102 C A ZNF239 Missense_Mutation p.Q142H 0.14 tolerated(0.15) possibly_damaging(0.72) TCGA-IB-7651-01 10 44112192 44112192 G T ZNF485 Missense_Mutation p.R234I 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-IB-7651-01 10 44139542 44139542 G A ZNF32 Silent p.L260L 0.19 TCGA-IB-7651-01 10 44141643 44141643 C A ZNF32 5'UTR 0.17 TCGA-IB-7651-01 10 45799016 45799016 G A OR13A1 Silent p.S285S 0.16 TCGA-IB-7651-01 10 46121762 46121762 C T ZFAND4 Silent p.Q503Q 0.20 TCGA-IB-7651-01 10 46264949 46264949 C T FAM21C Missense_Mutation p.S641F 0.18 deleterious(0) possibly_damaging(0.73) TCGA-IB-7651-01 10 46322028 46322028 C T AGAP4 Missense_Mutation p.A443T 0.11 deleterious(0.03) probably_damaging(0.987) TCGA-IB-7651-01 10 46962105 46962105 C A SYT15 Missense_Mutation p.Q377H 0.06 tolerated(1) benign(0.002) TCGA-IB-7651-01 10 46999004 46999004 A C GPRIN2 Missense_Mutation p.T42P 0.08 deleterious(0) benign(0.044) TCGA-IB-7651-01 10 46999231 46999231 G A GPRIN2 Missense_Mutation p.M117I 0.06 deleterious(0.04) benign(0.001) TCGA-IB-7651-01 10 46999326 46999326 G A GPRIN2 Missense_Mutation p.S149N 0.11 deleterious(0) possibly_damaging(0.828) TCGA-IB-7651-01 10 47087512 47087512 G A NPY4R Silent p.R243R 0.07 TCGA-IB-7651-01 10 47756730 47756730 G A ANXA8L2 Missense_Mutation p.R215K 0.20 tolerated(0.39) benign(0.003) TCGA-IB-7651-01 10 48371057 48371057 G A ZNF488 Silent p.E175E 0.20 TCGA-IB-7651-01 10 48413908 48413908 G A GDF2 Silent p.S320S 0.17 TCGA-IB-7651-01 10 48429256 48429256 G A GDF10 Silent p.V210V 0.22 TCGA-IB-7651-01 10 4889811 4889811 G A AKR1E2 3'UTR 0.22 TCGA-IB-7651-01 10 49371699 49371699 C A FRMPD2 Missense_Mutation p.A1185S 0.15 tolerated(0.59) benign(0.002) TCGA-IB-7651-01 10 49446033 49446033 C T FRMPD2 Splice_Site p.X307_splice 0.19 TCGA-IB-7651-01 10 49612896 49612896 G A MAPK8 Missense_Mutation p.A42T 0.15 deleterious(0) possibly_damaging(0.668) TCGA-IB-7651-01 10 50122110 50122110 G A LRRC18 Missense_Mutation p.R31C 0.16 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 10 5014837 5014837 C T AKR1C1 Missense_Mutation p.H248Y 0.19 tolerated(0.81) benign(0.033) TCGA-IB-7651-01 10 50531186 50531186 C T C10orf71 Missense_Mutation p.P199L 0.17 tolerated(0.76) probably_damaging(1) TCGA-IB-7651-01 10 50574348 50574348 C T DRGX Missense_Mutation p.R207H 0.22 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 10 50599296 50599296 A T DRGX Missense_Mutation p.F21I 0.17 deleterious_low_confidence(0.01) benign(0.266) TCGA-IB-7651-01 10 50678905 50678905 C T ERCC6 Missense_Mutation p.C1034Y 0.16 tolerated(1) benign(0.005) TCGA-IB-7651-01 10 50724850 50724850 C A ERCC6-PGBD3 Missense_Mutation p.R572M 0.20 deleterious_low_confidence(0.04) unknown(0) TCGA-IB-7651-01 10 50819143 50819143 C T SLC18A3 Silent p.S119S 0.09 TCGA-IB-7651-01 10 50820002 50820002 G A SLC18A3 Missense_Mutation p.A406T 0.09 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 10 50835752 50835752 C T CHAT Silent p.D344D 0.20 TCGA-IB-7651-01 10 50854680 50854680 G T CHAT Missense_Mutation p.S414I 0.17 tolerated(0.16) possibly_damaging(0.547) TCGA-IB-7651-01 10 50860033 50860033 C A CHAT Missense_Mutation p.L539I 0.05 tolerated(0.07) probably_damaging(0.914) TCGA-IB-7651-01 10 50943139 50943139 G T OGDHL 3'UTR 0.27 TCGA-IB-7651-01 10 50955097 50955097 C T OGDHL Missense_Mutation p.R382H 0.18 tolerated(0.08) benign(0.219) TCGA-IB-7651-01 10 51225014 51225014 G A AGAP8 Silent p.Y656Y 0.40 TCGA-IB-7651-01 10 51465371 51465371 G A AGAP7 Missense_Mutation p.T362I 0.19 deleterious(0.02) benign(0.326) TCGA-IB-7651-01 10 51465483 51465483 C T AGAP7 Missense_Mutation p.A325T 0.20 deleterious(0.05) benign(0.304) TCGA-IB-7651-01 10 5147842 5147842 G A AKR1C3 Missense_Mutation p.R301K 0.20 tolerated(0.59) benign(0.011) TCGA-IB-7651-01 10 51584652 51584652 G A NCOA4 Missense_Mutation p.G267R 0.20 deleterious(0) benign(0.021) TCGA-IB-7651-01 10 51748543 51748543 C T AGAP6 Missense_Mutation p.S23L 0.28 tolerated_low_confidence(0.2) benign(0.001) TCGA-IB-7651-01 10 51768812 51768812 C T AGAP6 Silent p.S309S 0.04 TCGA-IB-7651-01 10 51768996 51768996 C A AGAP6 Missense_Mutation p.L371M 0.19 tolerated(0.09) possibly_damaging(0.688) TCGA-IB-7651-01 10 51769191 51769191 C T AGAP6 Nonsense_Mutation p.Q436* 0.14 TCGA-IB-7651-01 10 51769922 51769922 C T AGAP6 Silent p.Y679Y 0.12 TCGA-IB-7651-01 10 51873706 51873706 C T FAM21A Silent p.S697S 0.09 TCGA-IB-7651-01 10 5203856 5203856 A G AKR1CL1 Missense_Mutation p.V114A 0.24 deleterious(0.01) possibly_damaging(0.787) TCGA-IB-7651-01 10 52103414 52103414 G A SGMS1 Missense_Mutation p.S154L 0.22 tolerated(0.05) possibly_damaging(0.475) TCGA-IB-7651-01 10 52103962 52103962 G A SGMS1 5'UTR 0.15 TCGA-IB-7651-01 10 5238805 5238805 C T AKR1C4 5'UTR 0.21 TCGA-IB-7651-01 10 52390538 52390538 C T RP11-50E11.3 RNA 0.11 TCGA-IB-7651-01 10 5247767 5247767 C T AKR1C4 Silent p.F139F 0.19 TCGA-IB-7651-01 10 52566453 52566453 T G A1CF 3'UTR 0.17 TCGA-IB-7651-01 10 52595854 52595854 G A A1CF Missense_Mutation p.A203V 0.08 deleterious(0) possibly_damaging(0.887) TCGA-IB-7651-01 10 52595869 52595869 C T A1CF Missense_Mutation p.R198Q 0.07 deleterious(0.03) probably_damaging(0.994) TCGA-IB-7651-01 10 5435806 5435806 T G TUBAL3 Missense_Mutation p.I339L 0.18 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-IB-7651-01 10 54527848 54527848 C T MBL2 3'UTR 0.18 TCGA-IB-7651-01 10 5498209 5498209 C T NET1 Nonsense_Mutation p.R453* 0.16 TCGA-IB-7651-01 10 55582479 55582479 G T PCDH15 Missense_Mutation p.F1671L 0.17 tolerated_low_confidence(0.74) benign(0.001) TCGA-IB-7651-01 10 55587172 55587172 C T PCDH15 Missense_Mutation p.E1450K 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.824) TCGA-IB-7651-01 10 55600201 55600201 A T PCDH15 Missense_Mutation p.S1288T 0.20 tolerated(0.24) benign(0.049) TCGA-IB-7651-01 10 55600233 55600233 T G PCDH15 Missense_Mutation p.E1277A 0.20 deleterious(0.01) benign(0.345) TCGA-IB-7651-01 10 55626499 55626499 G T PCDH15 Missense_Mutation p.A1207D 0.09 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 10 5566985 5566985 G A CALML3 5'UTR 0.24 TCGA-IB-7651-01 10 55719536 55719536 G T PCDH15 Silent p.V1026V 0.21 TCGA-IB-7651-01 10 55826621 55826621 C A PCDH15 Missense_Mutation p.V706L 0.17 tolerated(0.08) benign(0.033) TCGA-IB-7651-01 10 55892654 55892654 G T PCDH15 Missense_Mutation p.A633D 0.16 tolerated(0.13) possibly_damaging(0.896) TCGA-IB-7651-01 10 56077098 56077098 A C PCDH15 Missense_Mutation p.L270R 0.10 deleterious(0.04) possibly_damaging(0.521) TCGA-IB-7651-01 10 56128916 56128916 A T PCDH15 Silent p.T146T 0.18 TCGA-IB-7651-01 10 56129000 56129000 G A PCDH15 Silent p.V118V 0.20 TCGA-IB-7651-01 10 5773107 5773107 C T FAM208B Missense_Mutation p.S382L 0.20 tolerated(0.13) benign(0.003) TCGA-IB-7651-01 10 5777300 5777300 A G FAM208B Missense_Mutation p.K413R 0.18 tolerated(0.47) possibly_damaging(0.448) TCGA-IB-7651-01 10 5784280 5784280 G A FAM208B Missense_Mutation p.D850N 0.19 deleterious(0.03) benign(0.302) TCGA-IB-7651-01 10 5788293 5788293 G A FAM208B Missense_Mutation p.G970D 0.20 tolerated(1) benign(0.003) TCGA-IB-7651-01 10 5788959 5788959 G A FAM208B Missense_Mutation p.G1192D 0.20 deleterious(0.04) benign(0.046) TCGA-IB-7651-01 10 5810310 5810310 T C GDI2 Missense_Mutation p.Y286C 0.20 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 10 58118426 58118426 G T ZWINT Missense_Mutation p.A228D 0.19 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 10 58118706 58118706 C T ZWINT Silent p.E161E 0.16 TCGA-IB-7651-01 10 5945034 5945034 C T FBXO18 Missense_Mutation p.A69V 0.18 deleterious(0.01) possibly_damaging(0.798) TCGA-IB-7651-01 10 5948357 5948357 G A FBXO18 Missense_Mutation p.R223Q 0.10 tolerated(0.68) benign(0.002) TCGA-IB-7651-01 10 60121147 60121147 C A UBE2D1 Missense_Mutation p.P25H 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-IB-7651-01 10 60154908 60154908 G A TFAM 3'UTR 0.11 TCGA-IB-7651-01 10 60588555 60588555 G A BICC1 Silent p.S943S 0.05 TCGA-IB-7651-01 10 61554264 61554264 G A CCDC6 Silent p.H399H 0.17 TCGA-IB-7651-01 10 61572421 61572421 C A CCDC6 Missense_Mutation p.K273N 0.22 tolerated(0.08) probably_damaging(0.966) TCGA-IB-7651-01 10 61832967 61832967 G A ANK3 Missense_Mutation p.R2558C 0.17 benign(0.249) TCGA-IB-7651-01 10 61846505 61846505 T C ANK3 Silent p.S1226S 0.16 TCGA-IB-7651-01 10 61848050 61848050 T G ANK3 Missense_Mutation p.Q1132P 0.19 probably_damaging(0.92) TCGA-IB-7651-01 10 61848065 61848065 G A ANK3 Missense_Mutation p.T1127M 0.17 probably_damaging(1) TCGA-IB-7651-01 10 62023664 62023664 C T ANK3 Missense_Mutation p.A210T 0.22 probably_damaging(0.999) TCGA-IB-7651-01 10 62648459 62648459 G A RHOBTB1 Missense_Mutation p.R323W 0.08 deleterious(0) benign(0.001) TCGA-IB-7651-01 10 62670660 62670660 C T RHOBTB1 Missense_Mutation p.R94H 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 63525708 63525708 C T C10orf107 Silent p.N188N 0.14 TCGA-IB-7651-01 10 63852705 63852705 C T ARID5B Silent p.S1161S 0.18 TCGA-IB-7651-01 10 64159483 64159483 C T ZNF365 Intron 0.19 TCGA-IB-7651-01 10 64159577 64159577 G A ZNF365 Intron 0.18 TCGA-IB-7651-01 10 64382994 64382994 T G ZNF365 Silent p.S371S 0.18 TCGA-IB-7651-01 10 64414614 64414614 C T ZNF365 Intron 0.18 TCGA-IB-7651-01 10 64573594 64573594 G T EGR2 Silent p.I268I 0.15 TCGA-IB-7651-01 10 64573855 64573855 G A EGR2 Silent p.L181L 0.21 TCGA-IB-7651-01 10 64573870 64573870 G T EGR2 Silent p.G176G 0.21 TCGA-IB-7651-01 10 6470103 6470103 G T PRKCQ 3'UTR 0.09 TCGA-IB-7651-01 10 6483904 6483904 G A PRKCQ Missense_Mutation p.P596L 0.20 tolerated(0.22) probably_damaging(0.98) TCGA-IB-7651-01 10 64927615 64927615 T G JMJD1C 3'UTR 0.16 TCGA-IB-7651-01 10 64937606 64937606 C A JMJD1C Missense_Mutation p.K2365N 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-IB-7651-01 10 64968149 64968149 A G JMJD1C Missense_Mutation p.F1094L 0.21 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 10 64968369 64968369 C A JMJD1C Missense_Mutation p.E1020D 0.18 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 10 64975428 64975428 G A JMJD1C Missense_Mutation p.S236F 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-IB-7651-01 10 65225411 65225411 C T JMJD1C Silent p.E4E 0.13 TCGA-IB-7651-01 10 67680191 67680191 T C CTNNA3 Missense_Mutation p.E862G 0.20 deleterious(0) unknown(0) TCGA-IB-7651-01 10 68686696 68686696 C T LRRTM3 Silent p.L8L 0.21 TCGA-IB-7651-01 10 68686880 68686880 G A LRRTM3 Missense_Mutation p.R69H 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 68687299 68687299 G A LRRTM3 Missense_Mutation p.E209K 0.14 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 69366623 69366623 C T CTNNA3 Missense_Mutation p.R95H 0.15 deleterious(0.02) possibly_damaging(0.812) TCGA-IB-7651-01 10 69651188 69651188 T C SIRT1 Missense_Mutation p.F273S 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 69926239 69926239 C T MYPN Missense_Mutation p.R597C 0.22 deleterious(0) probably_damaging(0.961) TCGA-IB-7651-01 10 69966658 69966658 A G MYPN Missense_Mutation p.Y1264C 0.23 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 10 69991175 69991175 C A ATOH7 Missense_Mutation p.S87I 0.11 tolerated(0.12) possibly_damaging(0.682) TCGA-IB-7651-01 10 70101600 70101600 G A HNRNPH3 Missense_Mutation p.G319D 0.17 deleterious(0.02) benign(0.003) TCGA-IB-7651-01 10 70182500 70182500 C A DNA2 Missense_Mutation p.G872W 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 70248346 70248346 C T SLC25A16 Silent p.G217G 0.17 TCGA-IB-7651-01 10 70332731 70332731 G T TET1 Missense_Mutation p.E212D 0.20 tolerated(0.28) benign(0.02) TCGA-IB-7651-01 10 70333489 70333489 C A TET1 Missense_Mutation p.A465D 0.24 deleterious(0) possibly_damaging(0.747) TCGA-IB-7651-01 10 70406025 70406025 C T TET1 Missense_Mutation p.S1180F 0.16 deleterious(0) possibly_damaging(0.868) TCGA-IB-7651-01 10 70426935 70426935 G A TET1 Missense_Mutation p.R1532Q 0.26 tolerated(0.16) benign(0.052) TCGA-IB-7651-01 10 70450655 70450655 C T TET1 Missense_Mutation p.S1832L 0.19 deleterious(0.01) benign(0.139) TCGA-IB-7651-01 10 70508917 70508917 G A CCAR1 Missense_Mutation p.R284H 0.16 tolerated(0.11) probably_damaging(0.964) TCGA-IB-7651-01 10 70515188 70515188 C T CCAR1 Missense_Mutation p.S507L 0.20 deleterious(0) probably_damaging(0.968) TCGA-IB-7651-01 10 70644062 70644062 G A STOX1 Silent p.T170T 0.07 TCGA-IB-7651-01 10 70644973 70644973 A C STOX1 Missense_Mutation p.K474T 0.19 tolerated(0.36) benign(0.015) TCGA-IB-7651-01 10 70645435 70645435 T C STOX1 Missense_Mutation p.F628S 0.04 tolerated(0.25) benign(0.012) TCGA-IB-7651-01 10 70673194 70673194 C T DDX50 Missense_Mutation p.R269C 0.18 deleterious(0) probably_damaging(0.971) TCGA-IB-7651-01 10 70673252 70673252 T C DDX50 Missense_Mutation p.V288A 0.18 deleterious(0) probably_damaging(0.98) TCGA-IB-7651-01 10 70679738 70679738 G A DDX50 Splice_Site p.X413_splice 0.17 TCGA-IB-7651-01 10 70864053 70864053 G A SRGN 3'UTR 0.31 TCGA-IB-7651-01 10 70892692 70892692 C T VPS26A Silent p.I14I 0.19 TCGA-IB-7651-01 10 70940063 70940063 G A SUPV3L1 Missense_Mutation p.A6T 0.21 tolerated_low_confidence(0.22) benign(0.003) TCGA-IB-7651-01 10 70946204 70946204 C A SUPV3L1 Missense_Mutation p.L119I 0.18 tolerated(0.15) possibly_damaging(0.541) TCGA-IB-7651-01 10 71119777 71119777 C T HK1 Silent p.N121N 0.15 TCGA-IB-7651-01 10 71129326 71129326 G A HK1 Missense_Mutation p.R278Q 0.20 tolerated(0.19) benign(0.302) TCGA-IB-7651-01 10 71142486 71142486 G A HK1 Silent p.T507T 0.20 TCGA-IB-7651-01 10 71164835 71164835 C T TACR2 Missense_Mutation p.R315H 0.21 deleterious(0.01) probably_damaging(0.976) TCGA-IB-7651-01 10 71392750 71392750 C T C10orf35 Missense_Mutation p.L101F 0.14 tolerated(0.32) probably_damaging(0.997) TCGA-IB-7651-01 10 71392907 71392907 C T C10orf35 3'UTR 0.12 TCGA-IB-7651-01 10 71392964 71392964 G A C10orf35 3'UTR 0.15 TCGA-IB-7651-01 10 71851615 71851615 C A H2AFY2 Missense_Mutation p.L128I 0.12 tolerated(0.85) benign(0.115) TCGA-IB-7651-01 10 71874688 71874688 C T AIFM2 Missense_Mutation p.A320T 0.20 tolerated(0.88) benign(0.001) TCGA-IB-7651-01 10 71880912 71880912 C T AIFM2 Missense_Mutation p.G117D 0.17 deleterious(0) probably_damaging(0.965) TCGA-IB-7651-01 10 72285694 72285694 G T PALD1 5'UTR 0.18 TCGA-IB-7651-01 10 72299451 72299451 G A PALD1 Missense_Mutation p.R614H 0.15 tolerated(0.17) benign(0.005) TCGA-IB-7651-01 10 7230594 7230594 C T SFMBT2 Silent p.L600L 0.18 TCGA-IB-7651-01 10 72307142 72307142 C T PALD1 Silent p.S734S 0.08 TCGA-IB-7651-01 10 72357840 72357840 G A PRF1 Missense_Mutation p.P546L 0.19 deleterious(0.02) benign(0.033) TCGA-IB-7651-01 10 7244459 7244459 G A SFMBT2 Silent p.V490V 0.17 TCGA-IB-7651-01 10 72496502 72496502 A G ADAMTS14 Missense_Mutation p.T521A 0.13 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 10 72500759 72500759 C T ADAMTS14 Missense_Mutation p.R592C 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 10 72631635 72631635 T C SGPL1 Silent p.C317C 0.19 TCGA-IB-7651-01 10 7285598 7285598 G T SFMBT2 Missense_Mutation p.L348M 0.18 deleterious(0.03) probably_damaging(1) TCGA-IB-7651-01 10 73051266 73051266 G A UNC5B Missense_Mutation p.A458T 0.21 tolerated(0.07) possibly_damaging(0.792) TCGA-IB-7651-01 10 73121880 73121880 G A SLC29A3 Missense_Mutation p.V315I 0.21 tolerated(0.3) benign(0.032) TCGA-IB-7651-01 10 7326106 7326106 G A SFMBT2 Nonsense_Mutation p.R178* 0.11 TCGA-IB-7651-01 10 73447448 73447448 C T CDH23 Silent p.F269F 0.17 TCGA-IB-7651-01 10 73462397 73462397 G A CDH23 Silent p.L485L 0.19 TCGA-IB-7651-01 10 73500672 73500672 G A CDH23 Missense_Mutation p.E1533K 0.20 tolerated(0.25) probably_damaging(0.921) TCGA-IB-7651-01 10 73521358 73521358 T C C10orf54 Missense_Mutation p.T170A 0.18 tolerated(0.73) benign(0.002) TCGA-IB-7651-01 10 73521597 73521597 C T C10orf54 Missense_Mutation p.R90H 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 10 73569753 73569753 C T CDH23 Missense_Mutation p.R727C 0.18 tolerated(0.09) possibly_damaging(0.794) TCGA-IB-7651-01 10 73571308 73571308 C T CDH23 Missense_Mutation p.A840V 0.16 tolerated(0.54) benign(0.027) TCGA-IB-7651-01 10 73588645 73588645 G A PSAP Missense_Mutation p.P189S 0.17 tolerated(0.15) benign(0.041) TCGA-IB-7651-01 10 73588821 73588821 T G PSAP Missense_Mutation p.E130A 0.13 tolerated(0.41) possibly_damaging(0.542) TCGA-IB-7651-01 10 73765519 73765519 C T CHST3 5'UTR 0.11 TCGA-IB-7651-01 10 73765538 73765538 T G CHST3 5'UTR 0.21 TCGA-IB-7651-01 10 73767332 73767332 C T CHST3 Silent p.A181A 0.08 TCGA-IB-7651-01 10 73921319 73921319 C T ASCC1 Silent p.Q229Q 0.06 TCGA-IB-7651-01 10 73973061 73973061 C T ASCC1 5'UTR 0.23 TCGA-IB-7651-01 10 74034579 74034579 C T DDIT4 Missense_Mutation p.S111F 0.18 deleterious(0.02) possibly_damaging(0.492) TCGA-IB-7651-01 10 74671483 74671483 G T OIT3 Nonsense_Mutation p.G226* 0.18 TCGA-IB-7651-01 10 74767880 74767880 G T P4HA1 3'UTR 0.19 TCGA-IB-7651-01 10 74806855 74806855 G A P4HA1 Missense_Mutation p.P302L 0.18 deleterious(0.02) benign(0.279) TCGA-IB-7651-01 10 75006444 75006444 A G DNAJC9 Splice_Site p.X107_splice 0.20 TCGA-IB-7651-01 10 75056758 75056758 C A TTC18 Intron 0.19 TCGA-IB-7651-01 10 75101334 75101334 G A TTC18 Silent p.D205D 0.17 TCGA-IB-7651-01 10 75107993 75107993 C A TTC18 Missense_Mutation p.G117V 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 75277367 75277367 C T USP54 Silent p.E939E 0.21 TCGA-IB-7651-01 10 75408231 75408231 C A SYNPO2L Missense_Mutation p.Q393H 0.19 deleterious(0.05) possibly_damaging(0.486) TCGA-IB-7651-01 10 75510920 75510920 C A SEC24C Missense_Mutation p.A76D 0.16 tolerated(0.28) benign(0.075) TCGA-IB-7651-01 10 75520113 75520113 G A SEC24C Silent p.P273P 0.17 TCGA-IB-7651-01 10 75520479 75520479 G A SEC24C Missense_Mutation p.G287R 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 75526270 75526270 C T SEC24C Silent p.N590N 0.18 TCGA-IB-7651-01 10 75528646 75528646 C T SEC24C Missense_Mutation p.R754W 0.09 deleterious(0.02) benign(0.299) TCGA-IB-7651-01 10 75528855 75528855 C A SEC24C Missense_Mutation p.T790N 0.17 deleterious(0.04) probably_damaging(1) TCGA-IB-7651-01 10 75529125 75529125 C A SEC24C Missense_Mutation p.S815R 0.19 deleterious(0.01) possibly_damaging(0.646) TCGA-IB-7651-01 10 75532151 75532151 A G AC022400.2 Silent p.A76A 0.18 TCGA-IB-7651-01 10 75561174 75561174 G A ZSWIM8 Missense_Mutation p.G1809D 0.19 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 10 75671996 75671996 G A PLAU Missense_Mutation p.G37R 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 75673487 75673487 C T PLAU Silent p.C217C 0.19 TCGA-IB-7651-01 10 75863594 75863594 G A VCL Missense_Mutation p.R680H 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 10 75877971 75877971 G T VCL 3'UTR 0.20 TCGA-IB-7651-01 10 75893913 75893913 T C AP3M1 Missense_Mutation p.N152S 0.17 tolerated(0.06) benign(0.013) TCGA-IB-7651-01 10 7605113 7605113 T G ITIH5 Missense_Mutation p.D921A 0.19 deleterious(0) possibly_damaging(0.89) TCGA-IB-7651-01 10 76603081 76603081 G A KAT6B Missense_Mutation p.A156T 0.18 probably_damaging(0.969) TCGA-IB-7651-01 10 76744928 76744928 G A KAT6B Missense_Mutation p.E822K 0.19 probably_damaging(0.998) TCGA-IB-7651-01 10 76784866 76784866 A G KAT6B Missense_Mutation p.T1175A 0.17 possibly_damaging(0.833) TCGA-IB-7651-01 10 7682770 7682770 C A ITIH5 Missense_Mutation p.K116N 0.13 deleterious(0.01) possibly_damaging(0.877) TCGA-IB-7651-01 10 7682790 7682790 C T ITIH5 Missense_Mutation p.E110K 0.13 tolerated(0.08) benign(0.343) TCGA-IB-7651-01 10 7683960 7683960 C T ITIH5 Missense_Mutation p.A77T 0.18 tolerated(0.4) possibly_damaging(0.624) TCGA-IB-7651-01 10 76854490 76854490 G T DUSP13 Missense_Mutation p.L231I 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 10 76867809 76867809 A C DUSP13 Intron 0.22 TCGA-IB-7651-01 10 76928312 76928312 C T SAMD8 Nonsense_Mutation p.R230* 0.20 TCGA-IB-7651-01 10 76936003 76936003 T C SAMD8 Intron 0.16 TCGA-IB-7651-01 10 76936086 76936086 G A SAMD8 Intron 0.16 TCGA-IB-7651-01 10 7762890 7762890 C T ITIH2 Silent p.F234F 0.18 TCGA-IB-7651-01 10 7776892 7776892 G A ITIH2 Missense_Mutation p.A599T 0.04 deleterious(0.04) possibly_damaging(0.87) TCGA-IB-7651-01 10 7786082 7786082 G T ITIH2 Missense_Mutation p.K749N 0.20 tolerated(0.07) benign(0.236) TCGA-IB-7651-01 10 78317117 78317117 C T C10orf11 3'UTR 0.15 TCGA-IB-7651-01 10 7840983 7840983 C T ATP5C1 Missense_Mutation p.P85L 0.21 tolerated(0.05) benign(0.152) TCGA-IB-7651-01 10 78647147 78647147 C T KCNMA1 Silent p.S1179S 0.19 TCGA-IB-7651-01 10 78651348 78651348 C T KCNMA1 Missense_Mutation p.A1076T 0.09 tolerated(0.1) possibly_damaging(0.493) TCGA-IB-7651-01 10 78943289 78943289 A G KCNMA1 Missense_Mutation p.F233S 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 78944632 78944632 T C KCNMA1 Silent p.L215L 0.21 TCGA-IB-7651-01 10 79613246 79613246 C T DLG5 Missense_Mutation p.V244M 0.19 tolerated(0.39) possibly_damaging(0.509) TCGA-IB-7651-01 10 79737151 79737151 G A POLR3A 3'UTR 0.13 TCGA-IB-7651-01 10 8006790 8006790 C T TAF3 Silent p.S439S 0.16 TCGA-IB-7651-01 10 81037008 81037008 C T ZMIZ1 Silent p.S117S 0.20 TCGA-IB-7651-01 10 81056521 81056521 C T ZMIZ1 Intron 0.13 TCGA-IB-7651-01 10 8115837 8115837 G A GATA3 Missense_Mutation p.A396T 0.20 tolerated(0.07) benign(0.023) TCGA-IB-7651-01 10 81192458 81192458 G A ZCCHC24 Silent p.I101I 0.16 TCGA-IB-7651-01 10 81272742 81272742 C T EIF5AL1 Missense_Mutation p.R113C 0.07 deleterious(0) benign(0.025) TCGA-IB-7651-01 10 81319256 81319256 G A SFTPA2 5'UTR 0.18 TCGA-IB-7651-01 10 81371565 81371565 C T SFTPA1 Missense_Mutation p.A10V 0.06 tolerated_low_confidence(0.38) benign(0.002) TCGA-IB-7651-01 10 81372118 81372118 C T SFTPA1 Silent p.L90L 0.19 TCGA-IB-7651-01 10 81702155 81702155 G T SFTPD Missense_Mutation p.A141D 0.19 tolerated(0.36) benign(0.003) TCGA-IB-7651-01 10 81850679 81850679 T C TMEM254 3'UTR 0.17 TCGA-IB-7651-01 10 85955302 85955302 C T CDHR1 Silent p.N36N 0.07 TCGA-IB-7651-01 10 85973961 85973961 G A CDHR1 Missense_Mutation p.A722T 0.19 deleterious_low_confidence(0.01) probably_damaging(0.972) TCGA-IB-7651-01 10 85974159 85974159 C A CDHR1 Missense_Mutation p.L788I 0.10 deleterious_low_confidence(0.02) benign(0.017) TCGA-IB-7651-01 10 85974198 85974198 G A CDHR1 Missense_Mutation p.A801T 0.19 tolerated_low_confidence(0.19) benign(0.15) TCGA-IB-7651-01 10 85984832 85984832 G A LRIT2 Missense_Mutation p.P50L 0.16 tolerated(0.05) possibly_damaging(0.606) TCGA-IB-7651-01 10 85997326 85997326 C A LRIT1 Missense_Mutation p.R80M 0.16 tolerated(0.19) possibly_damaging(0.519) TCGA-IB-7651-01 10 86012754 86012754 C A RGR Missense_Mutation p.S171Y 0.20 deleterious(0) probably_damaging(0.937) TCGA-IB-7651-01 10 86130805 86130805 G A CCSER2 5'UTR 0.17 TCGA-IB-7651-01 10 87373312 87373312 C T GRID1 Missense_Mutation p.S818N 0.19 tolerated(0.68) benign(0.001) TCGA-IB-7651-01 10 87379700 87379700 C T GRID1 Missense_Mutation p.G762S 0.09 tolerated(0.2) benign(0.08) TCGA-IB-7651-01 10 87406942 87406942 C T GRID1 Intron 0.18 TCGA-IB-7651-01 10 87482893 87482893 C T GRID1 Missense_Mutation p.E622K 0.16 deleterious(0.01) benign(0.36) TCGA-IB-7651-01 10 88123711 88123711 C A GRID1 Missense_Mutation p.Q74H 0.14 tolerated(0.09) benign(0.002) TCGA-IB-7651-01 10 88211754 88211754 T C WAPAL Silent p.G1028G 0.18 TCGA-IB-7651-01 10 88419688 88419688 C T OPN4 Silent p.G290G 0.15 TCGA-IB-7651-01 10 88452318 88452318 C T LDB3 Nonsense_Mutation p.R364* 0.17 TCGA-IB-7651-01 10 88635777 88635777 T C BMPR1A Translation_Start_Site p.M1? 0.15 deleterious_low_confidence(0.01) benign(0.021) TCGA-IB-7651-01 10 88659555 88659555 C A BMPR1A Missense_Mutation p.S113Y 0.19 deleterious(0.04) probably_damaging(0.941) TCGA-IB-7651-01 10 88696774 88696774 T C MMRN2 Missense_Mutation p.H859R 0.05 deleterious(0) possibly_damaging(0.904) TCGA-IB-7651-01 10 88703517 88703517 T G MMRN2 Missense_Mutation p.K342Q 0.18 deleterious(0) probably_damaging(0.972) TCGA-IB-7651-01 10 88703541 88703541 C T MMRN2 Missense_Mutation p.D334N 0.19 tolerated(0.1) benign(0.263) TCGA-IB-7651-01 10 88752010 88752010 G T RP11-96C23.5 RNA 0.15 TCGA-IB-7651-01 10 88768262 88768262 C T RP11-96C23.10 3'Flank 0.10 TCGA-IB-7651-01 10 88769136 88769136 G A RP11-96C23.10 3'Flank 0.18 TCGA-IB-7651-01 10 88930603 88930603 T C FAM35A Missense_Mutation p.V612A 0.19 deleterious(0.01) benign(0.228) TCGA-IB-7651-01 10 88930652 88930652 A G FAM35A Silent p.E628E 0.16 TCGA-IB-7651-01 10 88940025 88940025 C T FAM35A Silent p.S719S 0.18 TCGA-IB-7651-01 10 88946903 88946903 C T FAM35A Silent p.L752L 0.14 TCGA-IB-7651-01 10 88988216 88988216 C T NUTM2A Silent p.C193C 0.07 TCGA-IB-7651-01 10 89473032 89473032 G A PAPSS2 Missense_Mutation p.V116I 0.17 tolerated(0.6) benign(0.006) TCGA-IB-7651-01 10 89487110 89487110 G A PAPSS2 Missense_Mutation p.G317E 0.17 tolerated(0.15) benign(0.018) TCGA-IB-7651-01 10 90122337 90122337 G T RNLS Silent p.V224V 0.16 TCGA-IB-7651-01 10 90356605 90356605 C T LIPJ Missense_Mutation p.S212L 0.19 deleterious(0.05) benign(0.011) TCGA-IB-7651-01 10 90429617 90429617 A G LIPF Missense_Mutation p.D159G 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 10 90433384 90433384 T G LIPF Missense_Mutation p.F247V 0.17 tolerated(0.13) possibly_damaging(0.689) TCGA-IB-7651-01 10 90438204 90438204 C T LIPF Silent p.S331S 0.04 TCGA-IB-7651-01 10 90583062 90583062 C T ANKRD22 Missense_Mutation p.R158H 0.04 tolerated(0.64) benign(0.001) TCGA-IB-7651-01 10 90673146 90673146 A G STAMBPL1 Missense_Mutation p.N237D 0.20 tolerated(0.66) benign(0.001) TCGA-IB-7651-01 10 90699290 90699290 T A ACTA2 Missense_Mutation p.E261V 0.16 deleterious_low_confidence(0.02) probably_damaging(0.977) TCGA-IB-7651-01 10 91007366 91007366 G T LIPA Missense_Mutation p.L14I 0.15 tolerated(0.25) benign(0.005) TCGA-IB-7651-01 10 91098786 91098786 A T IFIT3 Missense_Mutation p.K125M 0.19 deleterious(0.02) possibly_damaging(0.772) TCGA-IB-7651-01 10 91162578 91162578 G A IFIT1 Silent p.A182A 0.19 TCGA-IB-7651-01 10 91162883 91162883 C T IFIT1 Missense_Mutation p.S284F 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 91177557 91177557 C G IFIT5 Missense_Mutation p.L201V 0.20 deleterious(0.02) probably_damaging(0.963) TCGA-IB-7651-01 10 91192767 91192767 T G SLC16A12 3'UTR 0.22 TCGA-IB-7651-01 10 91195956 91195956 A C SLC16A12 Missense_Mutation p.F383L 0.21 deleterious(0.01) possibly_damaging(0.643) TCGA-IB-7651-01 10 91203589 91203589 G A SLC16A12 Silent p.F76F 0.17 TCGA-IB-7651-01 10 91469201 91469201 A C KIF20B Missense_Mutation p.K112Q 0.19 deleterious(0) possibly_damaging(0.828) TCGA-IB-7651-01 10 91477381 91477381 G A KIF20B Silent p.Q391Q 0.20 TCGA-IB-7651-01 10 91497999 91497999 C A KIF20B Missense_Mutation p.T1094N 0.10 tolerated(0.48) benign(0.001) TCGA-IB-7651-01 10 91498777 91498777 G T KIF20B Missense_Mutation p.R1240M 0.18 deleterious(0.01) probably_damaging(0.979) TCGA-IB-7651-01 10 92508676 92508676 A G HTR7 Silent p.N405N 0.10 TCGA-IB-7651-01 10 92509222 92509222 C A HTR7 Missense_Mutation p.Q223H 0.21 tolerated(0.25) benign(0.168) TCGA-IB-7651-01 10 92655655 92655655 C T RPP30 Missense_Mutation p.P200S 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-IB-7651-01 10 92663014 92663014 C A RPP30 Missense_Mutation p.L322I 0.16 deleterious_low_confidence(0) benign(0.364) TCGA-IB-7651-01 10 92672561 92672561 C T ANKRD1 3'UTR 0.22 TCGA-IB-7651-01 10 92672565 92672565 T C ANKRD1 3'UTR 0.17 TCGA-IB-7651-01 10 92675933 92675933 C T ANKRD1 Missense_Mutation p.D216N 0.17 deleterious(0) possibly_damaging(0.866) TCGA-IB-7651-01 10 93011074 93011074 G A PCGF5 Silent p.P117P 0.15 TCGA-IB-7651-01 10 93011174 93011174 C T PCGF5 Nonsense_Mutation p.Q151* 0.17 TCGA-IB-7651-01 10 93244323 93244323 G A HECTD2 Missense_Mutation p.R294H 0.11 deleterious(0) probably_damaging(0.97) TCGA-IB-7651-01 10 93256087 93256087 C T HECTD2 Silent p.G546G 0.11 TCGA-IB-7651-01 10 93608297 93608297 G A TNKS2 Missense_Mutation p.S839N 0.15 tolerated(0.32) benign(0.346) TCGA-IB-7651-01 10 93695422 93695422 G A BTAF1 Missense_Mutation p.R8H 0.24 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 10 93711250 93711250 G A BTAF1 Missense_Mutation p.S164N 0.10 tolerated(0.69) benign(0) TCGA-IB-7651-01 10 93713536 93713536 G T BTAF1 Nonsense_Mutation p.G203* 0.21 TCGA-IB-7651-01 10 93768637 93768637 C T BTAF1 Silent p.L1289L 0.19 TCGA-IB-7651-01 10 93999697 93999697 C A CPEB3 Missense_Mutation p.Q137H 0.08 deleterious(0.05) possibly_damaging(0.735) TCGA-IB-7651-01 10 94373174 94373174 C T KIF11 Missense_Mutation p.A277V 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 94381182 94381182 C A KIF11 Missense_Mutation p.A390D 0.07 deleterious(0) possibly_damaging(0.791) TCGA-IB-7651-01 10 94452255 94452255 G A HHEX Silent p.P164P 0.17 TCGA-IB-7651-01 10 94834670 94834670 C T CYP26A1 Silent p.R183R 0.18 TCGA-IB-7651-01 10 94836365 94836365 A G CYP26A1 Missense_Mutation p.Y355C 0.16 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 10 95082866 95082866 C T MYOF Missense_Mutation p.G1809R 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-IB-7651-01 10 95353719 95353719 G A RBP4 Silent p.L143L 0.18 TCGA-IB-7651-01 10 95353756 95353756 G A RBP4 Missense_Mutation p.T131M 0.17 deleterious(0) probably_damaging(0.943) TCGA-IB-7651-01 10 95396763 95396763 G T PDE6C Missense_Mutation p.E475D 0.15 tolerated(0.11) benign(0.014) TCGA-IB-7651-01 10 95429492 95429492 C G FRA10AC1 3'UTR 0.22 TCGA-IB-7651-01 10 95719394 95719394 C A PIPSL RNA 0.17 TCGA-IB-7651-01 10 95720147 95720147 C T PIPSL RNA 0.17 TCGA-IB-7651-01 10 95720340 95720340 G T PIPSL RNA 0.19 TCGA-IB-7651-01 10 95720635 95720635 G T PIPSL RNA 0.22 TCGA-IB-7651-01 10 95720749 95720749 G A PIPSL RNA 0.22 TCGA-IB-7651-01 10 96018655 96018655 T C PLCE1 Missense_Mutation p.F1218S 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 10 96022269 96022269 T G PLCE1 Missense_Mutation p.V1278G 0.18 tolerated(0.42) benign(0.012) TCGA-IB-7651-01 10 96022417 96022417 T C PLCE1 Silent p.L1327L 0.18 TCGA-IB-7651-01 10 96044717 96044717 T C PLCE1 Missense_Mutation p.F1677S 0.21 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 10 96076504 96076504 C T PLCE1 Silent p.T2111T 0.17 TCGA-IB-7651-01 10 96100033 96100033 C A NOC3L Missense_Mutation p.G594C 0.15 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 10 96117060 96117060 G A NOC3L Missense_Mutation p.H127Y 0.23 tolerated(0.69) benign(0.377) TCGA-IB-7651-01 10 96291155 96291155 G A TBC1D12 Missense_Mutation p.E733K 0.19 deleterious(0.01) benign(0.333) TCGA-IB-7651-01 10 96351995 96351995 G T HELLS Nonsense_Mutation p.E593* 0.18 TCGA-IB-7651-01 10 96447959 96447959 G T CYP2C18 Missense_Mutation p.G137W 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 96484190 96484190 C A CYP2C18 Missense_Mutation p.A350D 0.19 deleterious(0) possibly_damaging(0.879) TCGA-IB-7651-01 10 96493196 96493196 G A CYP2C18 Splice_Site p.X431_splice 0.21 TCGA-IB-7651-01 10 96707611 96707611 G A CYP2C9 Missense_Mutation p.R186H 0.09 tolerated(0.15) possibly_damaging(0.565) TCGA-IB-7651-01 10 97096906 97096906 G A SORBS1 Missense_Mutation p.T1004I 0.09 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-IB-7651-01 10 97397085 97397085 G A ALDH18A1 Missense_Mutation p.R138W 0.17 deleterious(0) probably_damaging(0.97) TCGA-IB-7651-01 10 97773576 97773576 C A CC2D2B Missense_Mutation p.P117H 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 97817750 97817750 C T CCNJ Missense_Mutation p.R302C 0.21 tolerated(0.25) benign(0.002) TCGA-IB-7651-01 10 97818091 97818091 C T CCNJ 3'UTR 0.21 TCGA-IB-7651-01 10 97916210 97916210 C T ZNF518A RNA 0.20 TCGA-IB-7651-01 10 97951516 97951516 C T BLNK 3'UTR 0.17 TCGA-IB-7651-01 10 97967627 97967627 C T BLNK Splice_Site p.X258_splice 0.18 TCGA-IB-7651-01 10 98064324 98064324 G A DNTT Missense_Mutation p.A24T 0.19 tolerated(0.14) benign(0.001) TCGA-IB-7651-01 10 98097997 98097997 A C DNTT 3'UTR 0.22 TCGA-IB-7651-01 10 98105750 98105750 A G OPALIN Missense_Mutation p.M125T 0.21 tolerated_low_confidence(0.18) benign(0.402) TCGA-IB-7651-01 10 98188430 98188430 G A TLL2 Missense_Mutation p.T199M 0.14 deleterious(0.02) possibly_damaging(0.889) TCGA-IB-7651-01 10 98282018 98282018 C A TM9SF3 3'UTR 0.15 TCGA-IB-7651-01 10 98325081 98325081 A G TM9SF3 Missense_Mutation p.I134T 0.05 deleterious(0.01) possibly_damaging(0.876) TCGA-IB-7651-01 10 98376418 98376418 C T PIK3AP1 Silent p.K664K 0.16 TCGA-IB-7651-01 10 98405355 98405355 G T PIK3AP1 Missense_Mutation p.A417D 0.16 tolerated(0.63) benign(0.007) TCGA-IB-7651-01 10 98741161 98741161 C A C10orf12 Missense_Mutation p.A5D 0.12 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 98741860 98741860 T G C10orf12 Missense_Mutation p.I238S 0.19 tolerated(0.08) benign(0.047) TCGA-IB-7651-01 10 98744054 98744054 C T C10orf12 Silent p.G969G 0.17 TCGA-IB-7651-01 10 98760969 98760969 C T SLIT1 Missense_Mutation p.R1502Q 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-IB-7651-01 10 98808726 98808726 T G SLIT1 Missense_Mutation p.K484T 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 10 98816148 98816148 A G SLIT1 Missense_Mutation p.S411P 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 10 98823297 98823297 G A SLIT1 Silent p.I236I 0.20 TCGA-IB-7651-01 10 98989630 98989630 C T ARHGAP19 Missense_Mutation p.R429Q 0.17 deleterious(0.01) possibly_damaging(0.631) TCGA-IB-7651-01 10 99190716 99190716 G A PGAM1 Missense_Mutation p.R140H 0.16 tolerated(0.38) benign(0.007) TCGA-IB-7651-01 10 99327681 99327681 G A UBTD1 Silent p.E27E 0.18 TCGA-IB-7651-01 10 99330200 99330200 A G UBTD1 Missense_Mutation p.T202A 0.18 tolerated(0.46) possibly_damaging(0.678) TCGA-IB-7651-01 10 99358558 99358558 G A HOGA1 Missense_Mutation p.E80K 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 10 99422666 99422666 C T PI4K2A Nonsense_Mutation p.R279* 0.16 TCGA-IB-7651-01 10 99433364 99433364 A C PI4K2A Missense_Mutation p.K405N 0.21 deleterious(0.01) benign(0.285) TCGA-IB-7651-01 10 99624000 99624000 G T GOLGA7B Missense_Mutation p.D123Y 0.06 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 10 99667810 99667810 G A CRTAC1 Silent p.N270N 0.05 TCGA-IB-7651-01 11 10051375 10051375 G A SBF2 Silent p.V150V 0.18 TCGA-IB-7651-01 11 10064430 10064430 G A SBF2 Silent p.C80C 0.19 TCGA-IB-7651-01 11 1006544 1006544 T G AP2A2 Missense_Mutation p.F741L 0.18 tolerated(0.08) possibly_damaging(0.809) TCGA-IB-7651-01 11 100996859 100996859 T G PGR Missense_Mutation p.Q556H 0.24 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 11 100998653 100998653 G A PGR Silent p.P383P 0.16 TCGA-IB-7651-01 11 100998847 100998847 G A PGR Missense_Mutation p.R319C 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 11 100999149 100999149 G A PGR Missense_Mutation p.A218V 0.19 tolerated_low_confidence(0.9) benign(0.007) TCGA-IB-7651-01 11 101342042 101342042 G A TRPC6 Missense_Mutation p.P761S 0.16 tolerated(0.06) probably_damaging(0.998) TCGA-IB-7651-01 11 101342956 101342956 A G TRPC6 Missense_Mutation p.V706A 0.15 tolerated(0.1) probably_damaging(0.996) TCGA-IB-7651-01 11 101353865 101353865 T G TRPC6 Missense_Mutation p.K442T 0.14 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 11 101374763 101374763 C T TRPC6 Missense_Mutation p.E313K 0.17 deleterious(0) possibly_damaging(0.669) TCGA-IB-7651-01 11 101951987 101951987 C A C11orf70 Missense_Mutation p.S217Y 0.17 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 11 102033283 102033283 T C YAP1 Silent p.N223N 0.20 TCGA-IB-7651-01 11 102100835 102100835 C T YAP1 3'UTR 0.11 TCGA-IB-7651-01 11 102195227 102195227 C T BIRC3 5'UTR 0.16 TCGA-IB-7651-01 11 102220830 102220830 A G BIRC2 Missense_Mutation p.K82R 0.17 tolerated(0.11) benign(0.077) TCGA-IB-7651-01 11 102394121 102394121 G T MMP7 Missense_Mutation p.L209M 0.20 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 11 1025023 1025023 G A MUC6 Missense_Mutation p.R1016C 0.13 unknown(0) TCGA-IB-7651-01 11 102595565 102595565 G A MMP8 Missense_Mutation p.P8S 0.19 tolerated(0.58) benign(0.08) TCGA-IB-7651-01 11 102647433 102647433 C A MMP10 Missense_Mutation p.A233S 0.16 tolerated(0.06) possibly_damaging(0.801) TCGA-IB-7651-01 11 102733744 102733744 G A MMP12 RNA 0.15 TCGA-IB-7651-01 11 1028027 1028027 G T MUC6 Missense_Mutation p.L596M 0.14 unknown(0) TCGA-IB-7651-01 11 1028689 1028689 C A MUC6 Missense_Mutation p.Q516H 0.12 unknown(0) TCGA-IB-7651-01 11 1029525 1029525 C A MUC6 Missense_Mutation p.G369V 0.07 unknown(0) TCGA-IB-7651-01 11 102980404 102980404 G A DYNC2H1 Missense_Mutation p.C34Y 0.16 benign(0) TCGA-IB-7651-01 11 103062952 103062952 T G DYNC2H1 Missense_Mutation p.F2556C 0.20 benign(0.038) TCGA-IB-7651-01 11 103086499 103086499 A T DYNC2H1 Missense_Mutation p.N2915I 0.20 benign(0.162) TCGA-IB-7651-01 11 103093703 103093703 C T DYNC2H1 Missense_Mutation p.R3081C 0.15 probably_damaging(0.999) TCGA-IB-7651-01 11 103158293 103158293 G T DYNC2H1 Missense_Mutation p.R3692I 0.14 probably_damaging(0.991) TCGA-IB-7651-01 11 103191850 103191850 C T DYNC2H1 Missense_Mutation p.L3947F 0.19 probably_damaging(0.997) TCGA-IB-7651-01 11 10328148 10328148 C T ADM Missense_Mutation p.A173V 0.17 tolerated_low_confidence(0.07) unknown(0) TCGA-IB-7651-01 11 103907738 103907738 C T DDI1 Missense_Mutation p.S63F 0.19 deleterious(0.01) possibly_damaging(0.866) TCGA-IB-7651-01 11 104820346 104820346 G T CASP4 Missense_Mutation p.F235L 0.17 deleterious(0) probably_damaging(0.944) TCGA-IB-7651-01 11 104822727 104822727 G A CASP4 Missense_Mutation p.P90S 0.20 tolerated(0.84) benign(0.002) TCGA-IB-7651-01 11 104871201 104871201 C T CASP5 Missense_Mutation p.A260T 0.14 tolerated(0.37) benign(0.016) TCGA-IB-7651-01 11 104872894 104872894 C T CASP5 Missense_Mutation p.R206H 0.16 deleterious(0.03) probably_damaging(0.942) TCGA-IB-7651-01 11 104879584 104879584 G T CASP5 Missense_Mutation p.S57Y 0.17 tolerated_low_confidence(0.12) benign(0.307) TCGA-IB-7651-01 11 104900402 104900402 G T CASP1 Silent p.A284A 0.09 TCGA-IB-7651-01 11 104971328 104971328 A G CARD17 Silent p.I62I 0.09 TCGA-IB-7651-01 11 10506432 10506432 G A AMPD3 Missense_Mutation p.D228N 0.16 tolerated(0.53) benign(0) TCGA-IB-7651-01 11 105483199 105483199 C T GRIA4 Intron 0.22 TCGA-IB-7651-01 11 105797622 105797622 C A GRIA4 Missense_Mutation p.A668D 0.08 tolerated(0.07) possibly_damaging(0.613) TCGA-IB-7651-01 11 10582264 10582264 C A LYVE1 Nonsense_Mutation p.E161* 0.09 TCGA-IB-7651-01 11 105850509 105850509 A G GRIA4 3'UTR 0.17 TCGA-IB-7651-01 11 105924236 105924236 T C KBTBD3 Missense_Mutation p.T394A 0.18 deleterious(0) probably_damaging(0.938) TCGA-IB-7651-01 11 105929591 105929591 C A KBTBD3 Splice_Site p.X78_splice 0.16 TCGA-IB-7651-01 11 105950319 105950319 G A AASDHPPT Silent p.P103P 0.17 TCGA-IB-7651-01 11 10603427 10603427 C T MRVI1 Missense_Mutation p.A783T 0.21 deleterious(0.02) possibly_damaging(0.89) TCGA-IB-7651-01 11 10615776 10615776 G A MRVI1 Intron 0.18 TCGA-IB-7651-01 11 106558105 106558105 A G GUCY1A2 3'UTR 0.19 TCGA-IB-7651-01 11 107309826 107309826 C T CWF19L2 Silent p.S218S 0.17 TCGA-IB-7651-01 11 107462633 107462633 C A AP000889.3 Missense_Mutation p.S50R 0.19 tolerated_low_confidence(0.41) benign(0) TCGA-IB-7651-01 11 107501173 107501173 C A ELMOD1 Nonsense_Mutation p.Y16* 0.18 TCGA-IB-7651-01 11 107535879 107535879 C T ELMOD1 Silent p.L321L 0.19 TCGA-IB-7651-01 11 107682519 107682519 G A SLC35F2 Silent p.G96G 0.17 TCGA-IB-7651-01 11 10772966 10772966 C T CTR9 Missense_Mutation p.R3W 0.21 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-IB-7651-01 11 10783548 10783548 C T CTR9 Missense_Mutation p.P266S 0.16 tolerated(0.79) benign(0.002) TCGA-IB-7651-01 11 107879985 107879985 G A CUL5 5'UTR 0.15 TCGA-IB-7651-01 11 10789414 10789414 C A CTR9 Missense_Mutation p.P583H 0.20 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 11 107923465 107923465 C T CUL5 Missense_Mutation p.H164Y 0.13 tolerated(0.57) benign(0.008) TCGA-IB-7651-01 11 10793106 10793106 T C CTR9 Missense_Mutation p.L796S 0.18 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 11 108014709 108014709 G T ACAT1 Splice_Site p.X314_splice 0.17 TCGA-IB-7651-01 11 108016987 108016987 C T ACAT1 Missense_Mutation p.A355V 0.04 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 108018094 108018094 G A ACAT1 Missense_Mutation p.A421T 0.16 deleterious(0.01) possibly_damaging(0.554) TCGA-IB-7651-01 11 108042973 108042973 T C NPAT Missense_Mutation p.N913S 0.16 tolerated(0.58) benign(0.133) TCGA-IB-7651-01 11 108043568 108043568 G A NPAT Missense_Mutation p.P715S 0.14 tolerated(0.23) benign(0.026) TCGA-IB-7651-01 11 108044536 108044536 T C NPAT Missense_Mutation p.N392S 0.13 tolerated(0.9) benign(0.015) TCGA-IB-7651-01 11 1080508 1080508 G T MUC2 Missense_Mutation p.D384Y 0.12 probably_damaging(0.972) TCGA-IB-7651-01 11 108198454 108198454 C A ATM Missense_Mutation p.P2353H 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 11 108201008 108201008 C T ATM Missense_Mutation p.R2459C 0.19 tolerated(0.11) benign(0.344) TCGA-IB-7651-01 11 108214019 108214019 T G ATM Missense_Mutation p.L2780R 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 108225552 108225552 C T ATM Missense_Mutation p.T2934I 0.15 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 11 10823295 10823295 C T EIF4G2 Silent p.Q442Q 0.17 TCGA-IB-7651-01 11 108382146 108382146 G T EXPH5 Missense_Mutation p.A1363D 0.06 deleterious(0) benign(0.145) TCGA-IB-7651-01 11 108383192 108383192 T C EXPH5 Silent p.E1014E 0.20 TCGA-IB-7651-01 11 108586668 108586668 A C DDX10 Missense_Mutation p.Q462P 0.19 tolerated(0.3) possibly_damaging(0.857) TCGA-IB-7651-01 11 108593877 108593877 C A DDX10 Nonsense_Mutation p.Y551* 0.18 TCGA-IB-7651-01 11 1086426 1086426 C T MUC2 Silent p.S1045S 0.17 TCGA-IB-7651-01 11 108709201 108709201 A G DDX10 Missense_Mutation p.K665R 0.19 tolerated(0.09) benign(0.23) TCGA-IB-7651-01 11 1092185 1092185 A G MUC2 Missense_Mutation p.D1335G 0.15 benign(0.305) TCGA-IB-7651-01 11 109294503 109294503 G T C11orf87 Silent p.T48T 0.09 TCGA-IB-7651-01 11 110035963 110035963 G A ZC3H12C Missense_Mutation p.R718Q 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-IB-7651-01 11 110124728 110124728 T C RDX Missense_Mutation p.E301G 0.17 deleterious(0.03) possibly_damaging(0.626) TCGA-IB-7651-01 11 110128544 110128544 A C RDX Missense_Mutation p.L216V 0.20 deleterious(0.03) possibly_damaging(0.583) TCGA-IB-7651-01 11 1102483 1102483 G A MUC2 Missense_Mutation p.E2623K 0.10 unknown(0) TCGA-IB-7651-01 11 110327671 110327671 A G FDX1 Missense_Mutation p.T114A 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 11 1104196 1104196 T C MUC2 Missense_Mutation p.V2796A 0.18 unknown(0) TCGA-IB-7651-01 11 110451031 110451031 C A ARHGAP20 Missense_Mutation p.G880V 0.20 tolerated(0.25) possibly_damaging(0.851) TCGA-IB-7651-01 11 110454328 110454328 T C ARHGAP20 Missense_Mutation p.I517V 0.20 tolerated(0.09) benign(0.024) TCGA-IB-7651-01 11 110501445 110501445 G A ARHGAP20 Silent p.L87L 0.17 TCGA-IB-7651-01 11 111385713 111385713 G T C11orf88 Silent p.R68R 0.19 TCGA-IB-7651-01 11 111574013 111574013 C A SIK2 Missense_Mutation p.L272I 0.22 tolerated(0.16) benign(0.01) TCGA-IB-7651-01 11 111614190 111614190 C A PPP2R1B Missense_Mutation p.E488D 0.18 tolerated(0.36) benign(0.001) TCGA-IB-7651-01 11 111622994 111622994 G A PPP2R1B Silent p.I409I 0.20 TCGA-IB-7651-01 11 111711410 111711410 G A ALG9 Missense_Mutation p.L210F 0.19 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 11 111724395 111724395 G A ALG9 Silent p.L85L 0.15 TCGA-IB-7651-01 11 111739395 111739395 C T ALG9 5'UTR 0.19 TCGA-IB-7651-01 11 111753104 111753104 G A C11orf1 Missense_Mutation p.A20T 0.18 tolerated(0.29) benign(0.01) TCGA-IB-7651-01 11 111866132 111866132 C T DIXDC1 Silent p.S510S 0.17 TCGA-IB-7651-01 11 111866170 111866170 G A DIXDC1 Missense_Mutation p.R523H 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 111899614 111899614 C T DLAT Missense_Mutation p.S202L 0.21 tolerated(0.19) benign(0.002) TCGA-IB-7651-01 11 111916599 111916599 C T DLAT Nonsense_Mutation p.R435* 0.16 TCGA-IB-7651-01 11 111930659 111930659 G A DLAT Missense_Mutation p.S516N 0.20 deleterious(0.01) benign(0.022) TCGA-IB-7651-01 11 111941873 111941873 G A PIH1D2 Missense_Mutation p.H146Y 0.17 tolerated(0.29) benign(0.033) TCGA-IB-7651-01 11 112084459 112084459 G A BCO2 Missense_Mutation p.A403T 0.15 tolerated(0.63) benign(0.014) TCGA-IB-7651-01 11 113075180 113075180 C T NCAM1 Silent p.G159G 0.18 TCGA-IB-7651-01 11 113102908 113102908 G T NCAM1 Missense_Mutation p.Q468H 0.11 tolerated(0.2) benign(0.003) TCGA-IB-7651-01 11 113258669 113258669 C T ANKK1 Silent p.F21F 0.15 TCGA-IB-7651-01 11 113266921 113266921 C T ANKK1 Missense_Mutation p.P272L 0.13 tolerated(0.09) benign(0.232) TCGA-IB-7651-01 11 113267969 113267969 C A ANKK1 Missense_Mutation p.L288M 0.24 deleterious(0.02) possibly_damaging(0.762) TCGA-IB-7651-01 11 113269997 113269997 G A ANKK1 Missense_Mutation p.A436T 0.20 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 11 113281506 113281506 G T DRD2 Silent p.I425I 0.19 TCGA-IB-7651-01 11 113560616 113560616 C T TMPRSS5 Silent p.V410V 0.16 TCGA-IB-7651-01 11 113604252 113604252 G T ZW10 3'UTR 0.14 TCGA-IB-7651-01 11 113610060 113610060 T G ZW10 Missense_Mutation p.N543T 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 11362395 11362395 C T GALNT18 Missense_Mutation p.V417I 0.18 tolerated(0.06) probably_damaging(0.994) TCGA-IB-7651-01 11 113660146 113660146 G T ATF4P4 RNA 0.16 TCGA-IB-7651-01 11 113661438 113661438 G A ATF4P4 RNA 0.18 TCGA-IB-7651-01 11 113683039 113683039 C T USP28 Missense_Mutation p.C644Y 0.13 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 113683095 113683095 G T USP28 Silent p.S625S 0.15 TCGA-IB-7651-01 11 113688414 113688414 G A USP28 Missense_Mutation p.H477Y 0.20 tolerated(0.05) benign(0.317) TCGA-IB-7651-01 11 113702669 113702669 T C USP28 Missense_Mutation p.D269G 0.06 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 11373731 11373731 C A CSNK2A3 Silent p.R312R 0.15 TCGA-IB-7651-01 11 11374681 11374681 C T CSNK2A3 5'UTR 0.20 TCGA-IB-7651-01 11 113780108 113780108 A G HTR3B Silent p.R48R 0.17 TCGA-IB-7651-01 11 113815474 113815474 A C HTR3B Missense_Mutation p.T363P 0.17 tolerated(0.17) benign(0.004) TCGA-IB-7651-01 11 113853894 113853894 G A HTR3A Missense_Mutation p.G149S 0.20 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 11 113857382 113857382 G A HTR3A Missense_Mutation p.G289D 0.10 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 11 113860390 113860390 G A HTR3A Missense_Mutation p.V486M 0.19 tolerated(0.11) possibly_damaging(0.689) TCGA-IB-7651-01 11 113860579 113860579 G T HTR3A 3'UTR 0.22 TCGA-IB-7651-01 11 113934573 113934573 G A ZBTB16 Missense_Mutation p.S184N 0.19 tolerated(0.09) benign(0.001) TCGA-IB-7651-01 11 114278261 114278261 G A RBM7 Missense_Mutation p.S178N 0.18 tolerated(0.81) benign(0) TCGA-IB-7651-01 11 114278379 114278379 G T RBM7 Missense_Mutation p.Q217H 0.19 deleterious(0.04) benign(0.006) TCGA-IB-7651-01 11 114310303 114310303 A G REXO2 Missense_Mutation p.H18R 0.10 tolerated_low_confidence(0.95) unknown(0) TCGA-IB-7651-01 11 114465413 114465413 A C NXPE4 Missense_Mutation p.I23M 0.16 tolerated(0.06) benign(0.064) TCGA-IB-7651-01 11 114569326 114569326 G A NXPE2 Missense_Mutation p.C231Y 0.05 tolerated(0.05) probably_damaging(0.986) TCGA-IB-7651-01 11 115049448 115049448 C T CADM1 Missense_Mutation p.V376M 0.16 tolerated(0.07) probably_damaging(0.945) TCGA-IB-7651-01 11 115088668 115088668 G A CADM1 Silent p.G255G 0.19 TCGA-IB-7651-01 11 115099861 115099861 C T CADM1 Silent p.L231L 0.16 TCGA-IB-7651-01 11 1157814 1157814 A G MUC5AC Missense_Mutation p.D294G 0.15 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 11 116627904 116627904 C A BUD13 Missense_Mutation p.R575I 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 116661334 116661334 C T APOA5 Missense_Mutation p.R204H 0.21 tolerated(0.44) benign(0.007) TCGA-IB-7651-01 11 116662558 116662558 C T APOA5 Missense_Mutation p.V7M 0.17 tolerated(0.06) benign(0.019) TCGA-IB-7651-01 11 116693862 116693862 C T APOA4 Missense_Mutation p.A16T 0.12 tolerated(1) unknown(0) TCGA-IB-7651-01 11 116703601 116703601 G A APOC3 3'UTR 0.17 TCGA-IB-7651-01 11 116718256 116718256 C T SIK3 Silent p.S1190S 0.16 TCGA-IB-7651-01 11 117105005 117105005 T C RNF214 Missense_Mutation p.V6A 0.16 deleterious_low_confidence(0.01) benign(0.157) TCGA-IB-7651-01 11 117166061 117166061 G A BACE1 Missense_Mutation p.S118F 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 117222548 117222548 C T CEP164 Silent p.N79N 0.19 TCGA-IB-7651-01 11 117241887 117241887 G A CEP164 Missense_Mutation p.S286N 0.16 tolerated(0.11) benign(0.081) TCGA-IB-7651-01 11 117302397 117302397 G A DSCAML1 Missense_Mutation p.R1803W 0.07 deleterious(0) probably_damaging(0.969) TCGA-IB-7651-01 11 117303203 117303203 T G DSCAML1 Missense_Mutation p.I1742L 0.14 tolerated(0.13) benign(0.012) TCGA-IB-7651-01 11 117308099 117308099 G A DSCAML1 Missense_Mutation p.L1547F 0.16 tolerated(0.07) possibly_damaging(0.885) TCGA-IB-7651-01 11 117392003 117392003 G A DSCAML1 Missense_Mutation p.T412M 0.21 deleterious(0.01) probably_damaging(0.975) TCGA-IB-7651-01 11 117651219 117651219 C T DSCAML1 Missense_Mutation p.R178H 0.18 tolerated(1) benign(0.005) TCGA-IB-7651-01 11 117691342 117691342 C A FXYD2 Intron 0.17 TCGA-IB-7651-01 11 117860269 117860269 C T IL10RA Missense_Mutation p.R101W 0.10 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 117869470 117869470 G A IL10RA Missense_Mutation p.R284H 0.18 tolerated(0.27) benign(0.001) TCGA-IB-7651-01 11 117975511 117975511 C T TMPRSS4 Missense_Mutation p.A139V 0.10 deleterious(0.03) possibly_damaging(0.601) TCGA-IB-7651-01 11 118015933 118015933 G A SCN4B Missense_Mutation p.L25F 0.19 tolerated(0.45) benign(0.007) TCGA-IB-7651-01 11 118038968 118038968 G A SCN2B Missense_Mutation p.R94W 0.08 deleterious(0) probably_damaging(0.937) TCGA-IB-7651-01 11 118039321 118039321 G A SCN2B Silent p.C72C 0.20 TCGA-IB-7651-01 11 118068807 118068807 C A AMICA1 Splice_Site p.X304_splice 0.18 TCGA-IB-7651-01 11 118083625 118083625 C T AMICA1 Intron 0.04 TCGA-IB-7651-01 11 118100520 118100520 G A MPZL3 3'UTR 0.15 TCGA-IB-7651-01 11 118179150 118179150 G T CD3E Nonsense_Mutation p.E27* 0.12 TCGA-IB-7651-01 11 118247314 118247314 C A UBE4A Silent p.I499I 0.19 TCGA-IB-7651-01 11 118263583 118263583 G A UBE4A Missense_Mutation p.R1023K 0.17 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 11 118355026 118355026 T C KMT2A Silent p.F1405F 0.21 TCGA-IB-7651-01 11 118373499 118373499 G A KMT2A Missense_Mutation p.D2298N 0.18 benign(0.018) TCGA-IB-7651-01 11 118374332 118374332 A G KMT2A Silent p.Q2575Q 0.19 TCGA-IB-7651-01 11 118425964 118425964 T G IFT46 Silent p.R138R 0.17 TCGA-IB-7651-01 11 118428591 118428591 G A IFT46 Silent p.G20G 0.18 TCGA-IB-7651-01 11 118453977 118453977 C T ARCN1 Silent p.V117V 0.18 TCGA-IB-7651-01 11 118454554 118454554 C T ARCN1 Missense_Mutation p.R160C 0.09 deleterious(0) possibly_damaging(0.776) TCGA-IB-7651-01 11 118498785 118498785 C T PHLDB1 Silent p.L416L 0.19 TCGA-IB-7651-01 11 118502965 118502965 G T PHLDB1 Missense_Mutation p.Q777H 0.17 tolerated(0.08) benign(0.04) TCGA-IB-7651-01 11 118521155 118521155 C A PHLDB1 Nonsense_Mutation p.C1259* 0.09 TCGA-IB-7651-01 11 118625471 118625471 G A DDX6 Silent p.L468L 0.16 TCGA-IB-7651-01 11 118769762 118769762 G A BCL9L Missense_Mutation p.R1288C 0.20 benign(0.106) TCGA-IB-7651-01 11 118770898 118770898 G A BCL9L Missense_Mutation p.P1045L 0.11 benign(0.001) TCGA-IB-7651-01 11 118772712 118772712 C T BCL9L Silent p.L580L 0.15 TCGA-IB-7651-01 11 118773616 118773616 G T BCL9L Missense_Mutation p.A279D 0.16 possibly_damaging(0.908) TCGA-IB-7651-01 11 118881506 118881506 C T CCDC84 Missense_Mutation p.S139F 0.13 deleterious(0) benign(0.201) TCGA-IB-7651-01 11 118919076 118919076 G A HYOU1 Silent p.L754L 0.20 TCGA-IB-7651-01 11 118949921 118949921 C T VPS11 Silent p.S782S 0.19 TCGA-IB-7651-01 11 118978770 118978770 G T C2CD2L Missense_Mutation p.V107L 0.14 deleterious(0.03) benign(0.016) TCGA-IB-7651-01 11 118978862 118978862 C T DPAGT1 5'UTR 0.15 TCGA-IB-7651-01 11 118983078 118983078 C A C2CD2L Missense_Mutation p.L354M 0.15 tolerated(0.07) possibly_damaging(0.736) TCGA-IB-7651-01 11 118983574 118983574 C T C2CD2L Silent p.D459D 0.11 TCGA-IB-7651-01 11 118984415 118984415 C T C2CD2L Silent p.S494S 0.17 TCGA-IB-7651-01 11 118984608 118984608 A G C2CD2L Silent p.T512T 0.16 TCGA-IB-7651-01 11 119003275 119003275 G A HINFP Missense_Mutation p.R249H 0.17 deleterious(0) possibly_damaging(0.818) TCGA-IB-7651-01 11 119004915 119004915 G A HINFP Missense_Mutation p.E421K 0.20 tolerated(0.09) benign(0.254) TCGA-IB-7651-01 11 119030980 119030980 C T ABCG4 Missense_Mutation p.T494M 0.15 deleterious(0) probably_damaging(0.909) TCGA-IB-7651-01 11 119057350 119057350 G T PDZD3 Missense_Mutation p.R94M 0.17 deleterious(0) possibly_damaging(0.882) TCGA-IB-7651-01 11 119181118 119181118 G A MCAM Missense_Mutation p.P618S 0.15 tolerated(0.49) probably_damaging(0.999) TCGA-IB-7651-01 11 119212585 119212585 C T MFRP Silent p.E499E 0.21 TCGA-IB-7651-01 11 119216795 119216795 G A MFRP Missense_Mutation p.L78F 0.12 tolerated(0.07) benign(0.06) TCGA-IB-7651-01 11 119243427 119243427 C A USP2 Missense_Mutation p.R255I 0.09 deleterious(0.01) benign(0.136) TCGA-IB-7651-01 11 119244150 119244150 G A USP2 Missense_Mutation p.S14L 0.15 deleterious_low_confidence(0) possibly_damaging(0.67) TCGA-IB-7651-01 11 119535964 119535964 G A PVRL1 Silent p.A349A 0.19 TCGA-IB-7651-01 11 119535972 119535972 G A PVRL1 Missense_Mutation p.R347W 0.19 deleterious(0.02) possibly_damaging(0.522) TCGA-IB-7651-01 11 120097673 120097673 G A OAF Missense_Mutation p.R172H 0.18 deleterious(0.02) probably_damaging(0.995) TCGA-IB-7651-01 11 120343820 120343820 A C ARHGEF12 Missense_Mutation p.N1006T 0.08 tolerated(0.11) benign(0.001) TCGA-IB-7651-01 11 120347416 120347416 G T ARHGEF12 Missense_Mutation p.Q1108H 0.18 tolerated(0.11) benign(0.034) TCGA-IB-7651-01 11 120348237 120348237 T C ARHGEF12 Splice_Site p.X1178_splice 0.10 TCGA-IB-7651-01 11 120355208 120355208 A C ARHGEF12 Missense_Mutation p.K1539T 0.10 deleterious_low_confidence(0.03) benign(0.14) TCGA-IB-7651-01 11 120355855 120355855 G A ARHGEF12 3'UTR 0.17 TCGA-IB-7651-01 11 120769288 120769288 C A GRIK4 Silent p.L404L 0.20 TCGA-IB-7651-01 11 120989026 120989026 C T TECTA Missense_Mutation p.R268W 0.18 deleterious(0) possibly_damaging(0.776) TCGA-IB-7651-01 11 120989208 120989208 A G TECTA Silent p.P328P 0.15 TCGA-IB-7651-01 11 120998829 120998829 C T TECTA Missense_Mutation p.L715F 0.18 deleterious(0.03) possibly_damaging(0.451) TCGA-IB-7651-01 11 121000350 121000350 A G TECTA Missense_Mutation p.N791D 0.19 tolerated(0.33) probably_damaging(0.933) TCGA-IB-7651-01 11 121028656 121028656 C T TECTA Missense_Mutation p.A1471V 0.16 tolerated(0.22) benign(0.028) TCGA-IB-7651-01 11 121031011 121031011 C T TECTA Silent p.C1619C 0.19 TCGA-IB-7651-01 11 121060582 121060582 C A TECTA Missense_Mutation p.S2120R 0.18 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-IB-7651-01 11 121383800 121383800 G T SORL1 Missense_Mutation p.R343I 0.18 deleterious(0.02) possibly_damaging(0.531) TCGA-IB-7651-01 11 121440888 121440888 G A SORL1 Silent p.Q1082Q 0.17 TCGA-IB-7651-01 11 121459973 121459973 G T SORL1 Missense_Mutation p.D1318Y 0.08 tolerated(0.21) benign(0.367) TCGA-IB-7651-01 11 12264276 12264276 C T MICAL2 Missense_Mutation p.A872V 0.09 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-IB-7651-01 11 122677157 122677157 C A UBASH3B Silent p.S545S 0.07 TCGA-IB-7651-01 11 122774741 122774741 G A C11orf63 Silent p.T151T 0.19 TCGA-IB-7651-01 11 12284100 12284100 G A MICAL2 Intron 0.21 TCGA-IB-7651-01 11 122848527 122848527 C A BSX Missense_Mutation p.A178S 0.22 tolerated(0.68) benign(0.003) TCGA-IB-7651-01 11 122848534 122848534 T C BSX Silent p.E175E 0.22 TCGA-IB-7651-01 11 122930388 122930388 G T HSPA8 Missense_Mutation p.L305M 0.16 tolerated_low_confidence(0.09) benign(0.406) TCGA-IB-7651-01 11 122944425 122944425 G A CLMP Silent p.G293G 0.17 TCGA-IB-7651-01 11 12341278 12341278 G A MICALCL Missense_Mutation p.E488K 0.18 deleterious(0.05) possibly_damaging(0.698) TCGA-IB-7651-01 11 123481019 123481019 G A GRAMD1B Missense_Mutation p.R488H 0.16 tolerated(0.57) probably_damaging(0.997) TCGA-IB-7651-01 11 123598907 123598907 G A ZNF202 Missense_Mutation p.P256S 0.18 tolerated(0.12) probably_damaging(1) TCGA-IB-7651-01 11 123601239 123601239 G T ZNF202 Missense_Mutation p.L120M 0.17 deleterious(0.05) probably_damaging(1) TCGA-IB-7651-01 11 123624503 123624503 G A OR6X1 Missense_Mutation p.H242Y 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 123624731 123624731 A C OR6X1 Missense_Mutation p.F166V 0.18 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 11 123624777 123624777 G A OR6X1 Silent p.G150G 0.16 TCGA-IB-7651-01 11 123676536 123676536 G T OR6M1 Missense_Mutation p.F174L 0.20 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 11 123753789 123753789 C G TMEM225 3'UTR 0.16 TCGA-IB-7651-01 11 123753963 123753963 G A TMEM225 Missense_Mutation p.S187F 0.18 deleterious(0) benign(0.01) TCGA-IB-7651-01 11 123754818 123754818 T G TMEM225 Missense_Mutation p.T143P 0.20 deleterious(0.01) probably_damaging(0.961) TCGA-IB-7651-01 11 123754867 123754867 T G TMEM225 Missense_Mutation p.Q126H 0.18 tolerated(0.09) benign(0.001) TCGA-IB-7651-01 11 123777647 123777647 G T OR8D4 Missense_Mutation p.G170V 0.08 deleterious(0.05) possibly_damaging(0.832) TCGA-IB-7651-01 11 123811251 123811251 G T OR4D5 Missense_Mutation p.G310C 0.17 deleterious(0) benign(0.417) TCGA-IB-7651-01 11 123813879 123813879 C T OR6T1 Missense_Mutation p.A223T 0.12 tolerated(0.41) benign(0.038) TCGA-IB-7651-01 11 123847863 123847863 C T OR10S1 Missense_Mutation p.R179H 0.16 tolerated(0.29) benign(0.006) TCGA-IB-7651-01 11 123894465 123894465 G A OR10G9 Missense_Mutation p.C249Y 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 123993815 123993815 G T VWA5A Missense_Mutation p.Q303H 0.24 deleterious(0.01) probably_damaging(0.928) TCGA-IB-7651-01 11 124135190 124135190 C T OR8G5 Silent p.D156D 0.18 TCGA-IB-7651-01 11 124189745 124189745 C A OR8D2 Missense_Mutation p.A117S 0.21 tolerated(0.15) benign(0.079) TCGA-IB-7651-01 11 124190029 124190029 T C OR8D2 Missense_Mutation p.E22G 0.20 tolerated(0.09) benign(0.205) TCGA-IB-7651-01 11 124310687 124310687 T G OR8B8 Missense_Mutation p.T99P 0.08 deleterious_low_confidence(0) possibly_damaging(0.824) TCGA-IB-7651-01 11 124413189 124413189 C T OR8B12 Missense_Mutation p.R121H 0.14 deleterious_low_confidence(0.03) benign(0.12) TCGA-IB-7651-01 11 124509617 124509617 C T SIAE Silent p.S371S 0.20 TCGA-IB-7651-01 11 124545184 124545184 C T SPA17 Silent p.T8T 0.13 TCGA-IB-7651-01 11 124618371 124618371 G T VSIG2 Missense_Mutation p.L256M 0.18 deleterious(0.01) probably_damaging(0.987) TCGA-IB-7651-01 11 124738946 124738946 G A ROBO3 Missense_Mutation p.D137N 0.14 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 124740119 124740119 G A ROBO3 Silent p.V275V 0.19 TCGA-IB-7651-01 11 124742317 124742317 G A ROBO3 Missense_Mutation p.R400H 0.23 deleterious(0.05) benign(0.141) TCGA-IB-7651-01 11 124742334 124742334 A C ROBO3 Silent p.R406R 0.22 TCGA-IB-7651-01 11 124765426 124765426 G A ROBO4 Silent p.F321F 0.19 TCGA-IB-7651-01 11 124765468 124765468 G A ROBO4 Silent p.S307S 0.05 TCGA-IB-7651-01 11 124765734 124765734 G A ROBO4 Missense_Mutation p.P252S 0.18 tolerated(0.17) benign(0.099) TCGA-IB-7651-01 11 124789985 124789985 G A HEPACAM 3'UTR 0.21 TCGA-IB-7651-01 11 124845009 124845009 A C CCDC15 Missense_Mutation p.K178N 0.15 deleterious(0) probably_damaging(0.971) TCGA-IB-7651-01 11 124857477 124857477 G A CCDC15 Missense_Mutation p.R452K 0.14 tolerated(1) benign(0.016) TCGA-IB-7651-01 11 124951718 124951718 C T SLC37A2 Silent p.S267S 0.15 TCGA-IB-7651-01 11 124956130 124956130 G T SLC37A2 3'UTR 0.17 TCGA-IB-7651-01 11 1251032 1251032 C T MUC5B Silent p.S405S 0.15 TCGA-IB-7651-01 11 1251768 1251768 G A MUC5B Missense_Mutation p.G470S 0.13 unknown(0) TCGA-IB-7651-01 11 1252652 1252652 G A MUC5B Splice_Site p.X514_splice 0.21 TCGA-IB-7651-01 11 125267823 125267823 C T PKNOX2 Silent p.V151V 0.20 TCGA-IB-7651-01 11 125445239 125445239 T C EI24 Silent p.R41R 0.16 TCGA-IB-7651-01 11 1254494 1254494 G A MUC5B Missense_Mutation p.V773M 0.25 unknown(0) TCGA-IB-7651-01 11 125451139 125451139 G T EI24 Nonsense_Mutation p.E236* 0.13 TCGA-IB-7651-01 11 125542362 125542362 C A ACRV1 3'UTR 0.20 TCGA-IB-7651-01 11 125542528 125542528 A C ACRV1 Missense_Mutation p.I253S 0.17 deleterious(0) possibly_damaging(0.839) TCGA-IB-7651-01 11 1255461 1255461 G A MUC5B Missense_Mutation p.D802N 0.20 unknown(0) TCGA-IB-7651-01 11 125546291 125546291 C A ACRV1 Missense_Mutation p.Q212H 0.19 deleterious(0) probably_damaging(0.967) TCGA-IB-7651-01 11 1255465 1255465 G T MUC5B Missense_Mutation p.C803F 0.20 unknown(0) TCGA-IB-7651-01 11 125765172 125765172 C A PUS3 Missense_Mutation p.E297D 0.19 tolerated(0.13) benign(0.016) TCGA-IB-7651-01 11 125788671 125788671 A C DDX25 Missense_Mutation p.N396T 0.22 deleterious(0) benign(0.019) TCGA-IB-7651-01 11 1258188 1258188 G A MUC5B Missense_Mutation p.D1031N 0.19 unknown(0) TCGA-IB-7651-01 11 125853983 125853983 G A CDON Missense_Mutation p.R927C 0.18 deleterious(0.04) probably_damaging(0.996) TCGA-IB-7651-01 11 126079531 126079531 G A RPUSD4 Silent p.L148L 0.16 TCGA-IB-7651-01 11 126133894 126133894 C T SRPR Missense_Mutation p.V612I 0.20 deleterious(0.02) probably_damaging(0.982) TCGA-IB-7651-01 11 1262147 1262147 G T MUC5B Missense_Mutation p.G1346V 0.09 unknown(0) TCGA-IB-7651-01 11 126215338 126215338 G A DCPS Missense_Mutation p.A282T 0.18 tolerated(0.37) benign(0.155) TCGA-IB-7651-01 11 126278040 126278040 C T ST3GAL4 Missense_Mutation p.R130W 0.16 deleterious(0) possibly_damaging(0.893) TCGA-IB-7651-01 11 126294626 126294626 C T KIRREL3 Missense_Mutation p.S729N 0.09 tolerated(0.22) probably_damaging(0.979) TCGA-IB-7651-01 11 126294877 126294877 C T KIRREL3 Silent p.E645E 0.12 TCGA-IB-7651-01 11 126316668 126316668 G A KIRREL3 Missense_Mutation p.R371W 0.12 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 1263600 1263600 C A MUC5B Nonsense_Mutation p.C1830* 0.19 TCGA-IB-7651-01 11 1264986 1264986 C A MUC5B Silent p.R2292R 0.08 TCGA-IB-7651-01 11 1265710 1265710 G T MUC5B Missense_Mutation p.A2534S 0.12 unknown(0) TCGA-IB-7651-01 11 1266175 1266175 T C MUC5B Missense_Mutation p.S2689P 0.12 unknown(0) TCGA-IB-7651-01 11 1268144 1268144 C T MUC5B Missense_Mutation p.S3345F 0.14 unknown(0) TCGA-IB-7651-01 11 1270821 1270821 G A MUC5B Silent p.T4237T 0.16 TCGA-IB-7651-01 11 1272392 1272392 C T MUC5B Missense_Mutation p.T4761M 0.18 unknown(0) TCGA-IB-7651-01 11 1275968 1275968 C T MUC5B Silent p.N5174N 0.18 TCGA-IB-7651-01 11 1279584 1279584 G T MUC5B Missense_Mutation p.G5527V 0.15 unknown(0) TCGA-IB-7651-01 11 128680721 128680721 C T FLI1 Silent p.N399N 0.05 TCGA-IB-7651-01 11 128709054 128709054 G A KCNJ1 Missense_Mutation p.S381L 0.15 tolerated(0.09) benign(0.074) TCGA-IB-7651-01 11 128781835 128781835 G A KCNJ5 Missense_Mutation p.D223N 0.15 tolerated(0.69) probably_damaging(1) TCGA-IB-7651-01 11 128786590 128786590 G A KCNJ5 Silent p.G408G 0.19 TCGA-IB-7651-01 11 128839218 128839218 G A ARHGAP32 Nonsense_Mutation p.R1950* 0.22 TCGA-IB-7651-01 11 128839523 128839523 G A ARHGAP32 Missense_Mutation p.T1848M 0.18 deleterious(0) benign(0.277) TCGA-IB-7651-01 11 128844286 128844286 C T ARHGAP32 Missense_Mutation p.V922I 0.23 tolerated(0.14) benign(0.207) TCGA-IB-7651-01 11 129321161 129321161 A G BARX2 Missense_Mutation p.E235G 0.05 tolerated(0.05) benign(0.002) TCGA-IB-7651-01 11 129321300 129321300 T C BARX2 3'UTR 0.14 TCGA-IB-7651-01 11 129793151 129793151 G A PRDM10 Nonsense_Mutation p.Q680* 0.21 TCGA-IB-7651-01 11 129804999 129804999 C T PRDM10 Missense_Mutation p.S385N 0.17 tolerated(0.1) benign(0.005) TCGA-IB-7651-01 11 129993589 129993589 C T APLP2 Silent p.C335C 0.06 TCGA-IB-7651-01 11 130011402 130011402 G A APLP2 Missense_Mutation p.E657K 0.16 tolerated(0.15) possibly_damaging(0.679) TCGA-IB-7651-01 11 130067743 130067743 G A ST14 Silent p.P454P 0.17 TCGA-IB-7651-01 11 130106855 130106855 G A ZBTB44 Intron 0.23 TCGA-IB-7651-01 11 130108397 130108397 G T ZBTB44 Silent p.T403T 0.17 TCGA-IB-7651-01 11 130275525 130275525 G T ADAMTS8 Silent p.A866A 0.20 TCGA-IB-7651-01 11 130281332 130281332 G A ADAMTS8 Missense_Mutation p.T577M 0.10 tolerated(0.16) benign(0.432) TCGA-IB-7651-01 11 130288972 130288972 G A ADAMTS8 Silent p.D312D 0.20 TCGA-IB-7651-01 11 130748219 130748219 G A SNX19 3'UTR 0.06 TCGA-IB-7651-01 11 130748391 130748391 C T SNX19 Missense_Mutation p.V969I 0.05 tolerated(0.44) benign(0.003) TCGA-IB-7651-01 11 130785193 130785193 G A SNX19 Silent p.G214G 0.18 TCGA-IB-7651-01 11 131781318 131781318 G A NTM 5'Flank 0.25 TCGA-IB-7651-01 11 131781469 131781469 C T NTM Missense_Mutation p.R32C 0.04 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 11 132177654 132177654 G A NTM Missense_Mutation p.E200K 0.19 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 11 132812820 132812820 C T OPCML Splice_Site p.X56_splice 0.14 TCGA-IB-7651-01 11 132812857 132812857 T C OPCML Missense_Mutation p.N44S 0.15 tolerated(0.15) possibly_damaging(0.852) TCGA-IB-7651-01 11 13378325 13378325 G A ARNTL Splice_Site p.X60_splice 0.20 TCGA-IB-7651-01 11 133790142 133790142 C T IGSF9B Missense_Mutation p.G1160S 0.19 tolerated_low_confidence(0.54) benign(0.077) TCGA-IB-7651-01 11 133790553 133790553 T G IGSF9B Missense_Mutation p.S1023R 0.19 tolerated_low_confidence(0.26) benign(0.271) TCGA-IB-7651-01 11 133790610 133790610 C T IGSF9B Missense_Mutation p.E1004K 0.18 deleterious_low_confidence(0.04) probably_damaging(0.994) TCGA-IB-7651-01 11 133790821 133790821 C A IGSF9B Missense_Mutation p.Q933H 0.21 tolerated(0.74) benign(0.003) TCGA-IB-7651-01 11 133791235 133791235 T G IGSF9B Missense_Mutation p.E795D 0.24 tolerated(0.14) possibly_damaging(0.669) TCGA-IB-7651-01 11 133795814 133795814 C T IGSF9B Silent p.P618P 0.14 TCGA-IB-7651-01 11 133814213 133814213 C T IGSF9B Missense_Mutation p.R104H 0.14 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 11 133815997 133815997 T G IGSF9B Missense_Mutation p.K74T 0.10 deleterious(0.03) benign(0.408) TCGA-IB-7651-01 11 134037948 134037948 A C NCAPD3 Missense_Mutation p.D1172E 0.17 tolerated(0.31) benign(0.02) TCGA-IB-7651-01 11 134055268 134055268 G A NCAPD3 Silent p.D733D 0.24 TCGA-IB-7651-01 11 134073691 134073691 C T NCAPD3 Silent p.K442K 0.20 TCGA-IB-7651-01 11 134074865 134074865 C T NCAPD3 Missense_Mutation p.A340T 0.15 tolerated(0.38) benign(0.001) TCGA-IB-7651-01 11 134076509 134076509 G A NCAPD3 Missense_Mutation p.A334V 0.19 tolerated(0.05) possibly_damaging(0.809) TCGA-IB-7651-01 11 134079098 134079098 G A NCAPD3 Silent p.V245V 0.18 TCGA-IB-7651-01 11 134109963 134109963 C A VPS26B Missense_Mutation p.S153R 0.17 tolerated(0.44) possibly_damaging(0.771) TCGA-IB-7651-01 11 134113076 134113076 G A VPS26B Silent p.K203K 0.14 TCGA-IB-7651-01 11 134115478 134115478 G A VPS26B Silent p.R335R 0.12 TCGA-IB-7651-01 11 134123498 134123498 C T ACAD8 Silent p.L2L 0.18 TCGA-IB-7651-01 11 134183877 134183877 G A GLB1L3 Missense_Mutation p.G541D 0.17 tolerated(0.68) benign(0.005) TCGA-IB-7651-01 11 134238539 134238539 G T GLB1L2 Missense_Mutation p.E297D 0.07 tolerated(0.68) benign(0.006) TCGA-IB-7651-01 11 134244527 134244527 G A GLB1L2 Missense_Mutation p.G580D 0.16 deleterious(0.01) possibly_damaging(0.623) TCGA-IB-7651-01 11 134257523 134257523 C T B3GAT1 Missense_Mutation p.V11I 0.14 tolerated_low_confidence(0.21) benign(0.007) TCGA-IB-7651-01 11 134257616 134257616 G A B3GAT1 Intron 0.17 TCGA-IB-7651-01 11 13438716 13438716 G A BTBD10 Nonsense_Mutation p.R226* 0.19 TCGA-IB-7651-01 11 13466718 13466718 G A BTBD10 5'UTR 0.19 TCGA-IB-7651-01 11 13743352 13743352 G T FAR1 Missense_Mutation p.W401C 0.22 deleterious(0) probably_damaging(0.957) TCGA-IB-7651-01 11 14504589 14504589 G A COPB1 Nonsense_Mutation p.R316* 0.14 TCGA-IB-7651-01 11 14510081 14510081 A G COPB1 Missense_Mutation p.F219S 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-IB-7651-01 11 14535242 14535242 T C PSMA1 Missense_Mutation p.M146V 0.20 tolerated(0.12) benign(0.004) TCGA-IB-7651-01 11 14880590 14880590 C T PDE3B Missense_Mutation p.A841V 0.17 deleterious(0.01) possibly_damaging(0.85) TCGA-IB-7651-01 11 14902107 14902107 T G CYP2R1 Missense_Mutation p.N192T 0.17 deleterious(0.03) possibly_damaging(0.751) TCGA-IB-7651-01 11 1491566 1491566 G A MOB2 Missense_Mutation p.L215F 0.18 deleterious(0.01) probably_damaging(0.936) TCGA-IB-7651-01 11 15096342 15096342 G A CALCB Silent p.A26A 0.17 TCGA-IB-7651-01 11 15134050 15134050 G T INSC Missense_Mutation p.S12I 0.13 deleterious_low_confidence(0.03) benign(0.008) TCGA-IB-7651-01 11 15134052 15134052 G A INSC Missense_Mutation p.E13K 0.13 deleterious_low_confidence(0) benign(0) TCGA-IB-7651-01 11 15212360 15212360 G T INSC Missense_Mutation p.K278N 0.20 deleterious(0) benign(0.139) TCGA-IB-7651-01 11 16007925 16007925 A G SOX6 Missense_Mutation p.Y650H 0.18 deleterious(0) probably_damaging(0.97) TCGA-IB-7651-01 11 1606276 1606276 G A KRTAP5-1 Silent p.G68G 0.17 TCGA-IB-7651-01 11 16077436 16077436 G A SOX6 Silent p.A371A 0.18 TCGA-IB-7651-01 11 1619657 1619657 C T KRTAP5-2 5'Flank 0.21 TCGA-IB-7651-01 11 1629124 1629124 G A KRTAP5-3 Silent p.C164C 0.18 TCGA-IB-7651-01 11 16760319 16760319 C T C11orf58 5'UTR 0.16 TCGA-IB-7651-01 11 16766172 16766172 G A C11orf58 Missense_Mutation p.A30T 0.21 deleterious(0.01) probably_damaging(0.911) TCGA-IB-7651-01 11 16811333 16811333 C T PLEKHA7 Missense_Mutation p.A1049T 0.17 tolerated(0.57) benign(0.01) TCGA-IB-7651-01 11 16823313 16823313 G A PLEKHA7 Nonsense_Mutation p.R737* 0.19 TCGA-IB-7651-01 11 16863183 16863183 G T PLEKHA7 Nonsense_Mutation p.Y261* 0.21 TCGA-IB-7651-01 11 17141433 17141433 C T PIK3C2A Missense_Mutation p.A916T 0.19 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 11 17150888 17150888 T G PIK3C2A Missense_Mutation p.E786D 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 11 17156420 17156420 T C PIK3C2A Missense_Mutation p.Q685R 0.19 tolerated(0.66) benign(0.269) TCGA-IB-7651-01 11 1718682 1718682 C A KRTAP5-6 Silent p.G69G 0.10 TCGA-IB-7651-01 11 17190264 17190264 C T PIK3C2A Missense_Mutation p.R342Q 0.08 tolerated_low_confidence(0.23) possibly_damaging(0.517) TCGA-IB-7651-01 11 17316892 17316892 C T NUCB2 Silent p.L8L 0.19 TCGA-IB-7651-01 11 17408593 17408593 A C KCNJ11 Missense_Mutation p.L349R 0.07 deleterious(0) probably_damaging(0.961) TCGA-IB-7651-01 11 17414677 17414677 T G ABCC8 Splice_Site p.X1537_splice 0.17 TCGA-IB-7651-01 11 17496471 17496471 G A ABCC8 Silent p.V84V 0.17 TCGA-IB-7651-01 11 17517163 17517163 G A USH1C Missense_Mutation p.R870C 0.20 deleterious_low_confidence(0.05) benign(0) TCGA-IB-7651-01 11 17545008 17545008 G A USH1C Silent p.V259V 0.20 TCGA-IB-7651-01 11 17547982 17547982 G A USH1C Nonsense_Mutation p.R196* 0.18 TCGA-IB-7651-01 11 17757938 17757938 G A KCNC1 Missense_Mutation p.S130N 0.25 tolerated(0.49) benign(0.005) TCGA-IB-7651-01 11 1778668 1778668 C T CTSD Missense_Mutation p.G197D 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 11 17793582 17793582 G A KCNC1 Missense_Mutation p.R314H 0.20 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 11 18042657 18042657 G A TPH1 Missense_Mutation p.R406W 0.17 deleterious(0) possibly_damaging(0.754) TCGA-IB-7651-01 11 18057690 18057690 C A TPH1 Splice_Site p.X40_splice 0.17 TCGA-IB-7651-01 11 18159146 18159146 C T MRGPRX3 Missense_Mutation p.R133C 0.18 deleterious(0.02) benign(0.16) TCGA-IB-7651-01 11 18313060 18313060 G A HPS5 Missense_Mutation p.A790V 0.16 tolerated(1) benign(0.007) TCGA-IB-7651-01 11 18359773 18359773 T G GTF2H1 Silent p.S155S 0.17 TCGA-IB-7651-01 11 18387396 18387396 C T GTF2H1 Missense_Mutation p.R543C 0.15 deleterious(0.04) benign(0.094) TCGA-IB-7651-01 11 18478136 18478136 G A LDHAL6A 5'UTR 0.22 TCGA-IB-7651-01 11 18536312 18536312 C T TSG101 Silent p.K90K 0.13 TCGA-IB-7651-01 11 18536328 18536328 G T TSG101 Missense_Mutation p.P85H 0.14 deleterious(0) probably_damaging(0.968) TCGA-IB-7651-01 11 18557951 18557951 A G UEVLD Splice_Site p.X375_splice 0.19 TCGA-IB-7651-01 11 1862727 1862727 C T TNNI2 Silent p.I165I 0.18 TCGA-IB-7651-01 11 18722484 18722484 A C TMEM86A Missense_Mutation p.K9T 0.21 tolerated(0.06) possibly_damaging(0.894) TCGA-IB-7651-01 11 18723381 18723381 C T TMEM86A Missense_Mutation p.A183V 0.15 deleterious(0) probably_damaging(0.931) TCGA-IB-7651-01 11 18729430 18729430 G A IGSF22 Silent p.R1067R 0.14 TCGA-IB-7651-01 11 18955973 18955973 C T MRGPRX1 Missense_Mutation p.R120H 0.18 tolerated(0.06) possibly_damaging(0.458) TCGA-IB-7651-01 11 1901374 1901374 G T LSP1 Missense_Mutation p.Q165H 0.18 deleterious_low_confidence(0) possibly_damaging(0.563) TCGA-IB-7651-01 11 1904667 1904667 C T LSP1 Silent p.Y253Y 0.16 TCGA-IB-7651-01 11 19259489 19259489 G A E2F8 Missense_Mutation p.A69V 0.19 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 11 1955621 1955621 G T TNNT3 Missense_Mutation p.K142N 0.14 deleterious(0) possibly_damaging(0.908) TCGA-IB-7651-01 11 1958209 1958209 G A TNNT3 Missense_Mutation p.S233N 0.09 tolerated(1) benign(0.003) TCGA-IB-7651-01 11 19901485 19901485 G T NAV2 Missense_Mutation p.Q194H 0.19 deleterious(0) probably_damaging(0.984) TCGA-IB-7651-01 11 19901641 19901641 G T NAV2 Missense_Mutation p.Q246H 0.20 tolerated_low_confidence(0.21) benign(0.002) TCGA-IB-7651-01 11 19961293 19961293 G A NAV2 Missense_Mutation p.G730E 0.18 deleterious(0.02) possibly_damaging(0.786) TCGA-IB-7651-01 11 20066559 20066559 C T NAV2 Missense_Mutation p.P1105L 0.19 tolerated(0.49) probably_damaging(0.999) TCGA-IB-7651-01 11 20089942 20089942 A C NAV2 Missense_Mutation p.N1717H 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 11 20404603 20404603 C T HTATIP2 Missense_Mutation p.S228F 0.18 tolerated(0.39) benign(0.001) TCGA-IB-7651-01 11 20417453 20417453 G A PRMT3 Missense_Mutation p.A169T 0.18 possibly_damaging(0.87) TCGA-IB-7651-01 11 20652292 20652292 G A SLC6A5 Missense_Mutation p.V519I 0.19 deleterious(0.02) probably_damaging(0.987) TCGA-IB-7651-01 11 20691166 20691166 G A NELL1 5'UTR 0.21 TCGA-IB-7651-01 11 20948936 20948936 G A NELL1 Missense_Mutation p.R281Q 0.19 tolerated(0.13) possibly_damaging(0.846) TCGA-IB-7651-01 11 209565 209565 C T RIC8A Silent p.D97D 0.21 TCGA-IB-7651-01 11 21581775 21581775 C T NELL1 Silent p.N609N 0.17 TCGA-IB-7651-01 11 2167572 2167572 G A INS-IGF2 3'Flank 0.23 TCGA-IB-7651-01 11 2186913 2186913 G T TH Silent p.S426S 0.15 TCGA-IB-7651-01 11 2189854 2189854 G A TH Silent p.A149A 0.26 TCGA-IB-7651-01 11 22225378 22225378 C T ANO5 Silent p.Y23Y 0.11 TCGA-IB-7651-01 11 22283829 22283829 G A ANO5 Silent p.E595E 0.16 TCGA-IB-7651-01 11 22301230 22301230 C T ANO5 Silent p.N887N 0.14 TCGA-IB-7651-01 11 22363311 22363311 C T SLC17A6 Silent p.G108G 0.17 TCGA-IB-7651-01 11 22381043 22381043 C A SLC17A6 Silent p.I181I 0.15 TCGA-IB-7651-01 11 22696559 22696559 A G GAS2 Silent p.L48L 0.17 TCGA-IB-7651-01 11 22747968 22747968 C T GAS2 Missense_Mutation p.S133L 0.18 deleterious(0) probably_damaging(0.913) TCGA-IB-7651-01 11 22777449 22777449 C T GAS2 Missense_Mutation p.R225W 0.18 deleterious(0.05) probably_damaging(0.973) TCGA-IB-7651-01 11 2423983 2423983 G A TSSC4 Silent p.L40L 0.20 TCGA-IB-7651-01 11 2432869 2432869 C T TRPM5 Missense_Mutation p.R868H 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 2436266 2436266 C T TRPM5 Silent p.P497P 0.10 TCGA-IB-7651-01 11 2482892 2482892 G A KCNQ1 Intron 0.15 TCGA-IB-7651-01 11 2606516 2606516 G A KCNQ1 Silent p.P369P 0.05 TCGA-IB-7651-01 11 26463513 26463513 C T ANO3 Missense_Mutation p.P32L 0.17 deleterious_low_confidence(0) possibly_damaging(0.856) TCGA-IB-7651-01 11 26465342 26465342 T C ANO3 Missense_Mutation p.V91A 0.17 tolerated_low_confidence(0.38) benign(0.002) TCGA-IB-7651-01 11 26574818 26574818 G A ANO3 Missense_Mutation p.E438K 0.18 tolerated(0.6) benign(0.285) TCGA-IB-7651-01 11 26581452 26581452 G T MUC15 3'UTR 0.20 TCGA-IB-7651-01 11 26582721 26582721 G T MUC15 Missense_Mutation p.S326Y 0.21 deleterious(0.01) probably_damaging(0.919) TCGA-IB-7651-01 11 26619917 26619917 G T ANO3 Missense_Mutation p.V485F 0.17 tolerated(0.06) probably_damaging(0.988) TCGA-IB-7651-01 11 26619977 26619977 G A ANO3 Missense_Mutation p.E505K 0.17 deleterious(0.01) possibly_damaging(0.504) TCGA-IB-7651-01 11 26620437 26620437 T G ANO3 Nonsense_Mutation p.Y521* 0.13 TCGA-IB-7651-01 11 26669283 26669283 T C ANO3 Missense_Mutation p.I819T 0.17 deleterious(0) probably_damaging(0.925) TCGA-IB-7651-01 11 27016810 27016810 T G FIBIN 3'UTR 0.21 TCGA-IB-7651-01 11 27389278 27389278 A C LGR4 3'UTR 0.22 TCGA-IB-7651-01 11 27528444 27528444 G T LIN7C 5'Flank 0.12 TCGA-IB-7651-01 11 27679922 27679922 C T BDNF Missense_Mutation p.E146K 0.17 deleterious(0.05) probably_damaging(0.956) TCGA-IB-7651-01 11 28134880 28134880 A C METTL15 5'UTR 0.16 TCGA-IB-7651-01 11 28318399 28318399 G C METTL15 Missense_Mutation p.K233N 0.19 deleterious(0.04) benign(0.363) TCGA-IB-7651-01 11 290822 290822 C T ATHL1 Silent p.G205G 0.22 TCGA-IB-7651-01 11 30033579 30033579 C T KCNA4 Missense_Mutation p.R216H 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-IB-7651-01 11 30033811 30033811 T G KCNA4 Silent p.R139R 0.16 TCGA-IB-7651-01 11 30255204 30255204 G A FSHB Missense_Mutation p.G83S 0.19 deleterious(0.03) probably_damaging(0.974) TCGA-IB-7651-01 11 30914541 30914541 G A DCDC1 Missense_Mutation p.H1633Y 0.20 deleterious(0.04) benign(0.291) TCGA-IB-7651-01 11 30915873 30915873 C T DCDC1 Silent p.Q1605Q 0.16 TCGA-IB-7651-01 11 30938573 30938573 T G DCDC1 Missense_Mutation p.D1099A 0.20 deleterious(0.01) possibly_damaging(0.728) TCGA-IB-7651-01 11 31115709 31115709 T C DCDC1 Missense_Mutation p.H669R 0.19 tolerated(0.21) benign(0.013) TCGA-IB-7651-01 11 3115648 3115648 G A OSBPL5 Intron 0.20 TCGA-IB-7651-01 11 31312288 31312288 A C DCDC1 Missense_Mutation p.L289R 0.08 deleterious(0.01) benign(0.128) TCGA-IB-7651-01 11 31805078 31805078 C A ELP4 3'UTR 0.19 TCGA-IB-7651-01 11 32460538 32460538 G A WT1 5'Flank 0.18 TCGA-IB-7651-01 11 3249343 3249343 G A MRGPRE Silent p.C228C 0.21 TCGA-IB-7651-01 11 3249838 3249838 G A MRGPRE Silent p.D63D 0.17 TCGA-IB-7651-01 11 32635356 32635356 C A CCDC73 Missense_Mutation p.Q836H 0.17 tolerated(0.07) benign(0.178) TCGA-IB-7651-01 11 32635397 32635397 T G CCDC73 Missense_Mutation p.K823Q 0.17 deleterious(0.04) probably_damaging(0.921) TCGA-IB-7651-01 11 32955888 32955888 G A QSER1 Silent p.V899V 0.17 TCGA-IB-7651-01 11 32956758 32956758 C A QSER1 Silent p.P1189P 0.19 TCGA-IB-7651-01 11 32987888 32987888 C T QSER1 Missense_Mutation p.T1542I 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 33117913 33117913 T G CSTF3 Missense_Mutation p.K438N 0.20 deleterious(0) possibly_damaging(0.765) TCGA-IB-7651-01 11 33123884 33123884 T G CSTF3 Missense_Mutation p.E222A 0.26 tolerated(0.07) benign(0.045) TCGA-IB-7651-01 11 33373714 33373714 G A HIPK3 Missense_Mutation p.R1025Q 0.18 tolerated(0.17) benign(0.009) TCGA-IB-7651-01 11 33564355 33564355 G A KIAA1549L Missense_Mutation p.A119T 0.19 tolerated_low_confidence(0.05) possibly_damaging(0.498) TCGA-IB-7651-01 11 33572673 33572673 G A KIAA1549L Missense_Mutation p.E900K 0.36 deleterious(0.01) possibly_damaging(0.621) TCGA-IB-7651-01 11 33612912 33612912 G A KIAA1549L Missense_Mutation p.V1269I 0.09 tolerated(0.62) benign(0.011) TCGA-IB-7651-01 11 33689517 33689517 G A KIAA1549L Silent p.L1789L 0.22 TCGA-IB-7651-01 11 33739011 33739011 C A CD59 Missense_Mutation p.S25I 0.13 deleterious(0) possibly_damaging(0.767) TCGA-IB-7651-01 11 3380315 3380315 C A ZNF195 3'UTR 0.18 TCGA-IB-7651-01 11 3380552 3380552 G A ZNF195 Silent p.F562F 0.19 TCGA-IB-7651-01 11 3380642 3380642 G A ZNF195 Silent p.T532T 0.08 TCGA-IB-7651-01 11 3381120 3381120 T G ZNF195 Missense_Mutation p.Q373P 0.19 deleterious(0) possibly_damaging(0.84) TCGA-IB-7651-01 11 3381489 3381489 C T ZNF195 Missense_Mutation p.G250D 0.17 tolerated(0.11) probably_damaging(0.999) TCGA-IB-7651-01 11 34162000 34162000 C A NAT10 Missense_Mutation p.L825M 0.18 deleterious(0.01) probably_damaging(0.971) TCGA-IB-7651-01 11 34181856 34181856 G T ABTB2 Nonsense_Mutation p.C814* 0.18 TCGA-IB-7651-01 11 34194836 34194836 C T ABTB2 Silent p.P421P 0.08 TCGA-IB-7651-01 11 34482810 34482810 G A CAT Missense_Mutation p.A357T 0.17 deleterious(0.02) benign(0.267) TCGA-IB-7651-01 11 35218302 35218302 G T CD44 Missense_Mutation p.S226I 0.18 deleterious(0.05) benign(0.216) TCGA-IB-7651-01 11 35250775 35250775 A T CD44 Missense_Mutation p.E708D 0.18 deleterious(0) probably_damaging(0.961) TCGA-IB-7651-01 11 35282310 35282310 C A SLC1A2 3'UTR 0.23 TCGA-IB-7651-01 11 35338932 35338932 G A SLC1A2 Missense_Mutation p.T50M 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 35461197 35461197 G T PAMR1 Missense_Mutation p.L377I 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-IB-7651-01 11 36422814 36422814 G A PRR5L Missense_Mutation p.S48N 0.13 tolerated(0.23) benign(0.024) TCGA-IB-7651-01 11 36596004 36596004 G T RAG1 Nonsense_Mutation p.E384* 0.18 TCGA-IB-7651-01 11 3688612 3688612 G A CHRNA10 Missense_Mutation p.L249F 0.19 deleterious(0.03) benign(0.337) TCGA-IB-7651-01 11 3688708 3688708 C T CHRNA10 Missense_Mutation p.G217S 0.17 tolerated(0.07) possibly_damaging(0.466) TCGA-IB-7651-01 11 373496 373496 C A B4GALNT4 Silent p.S228S 0.12 TCGA-IB-7651-01 11 373509 373509 C T B4GALNT4 Missense_Mutation p.P233S 0.12 tolerated(0.12) possibly_damaging(0.781) TCGA-IB-7651-01 11 375875 375875 G T B4GALNT4 Missense_Mutation p.E338D 0.19 deleterious(0.02) possibly_damaging(0.862) TCGA-IB-7651-01 11 376150 376150 G A B4GALNT4 Missense_Mutation p.R391H 0.17 deleterious(0.04) probably_damaging(0.995) TCGA-IB-7651-01 11 377173 377173 C T B4GALNT4 Missense_Mutation p.R684C 0.16 deleterious(0) unknown(0) TCGA-IB-7651-01 11 377297 377297 A G B4GALNT4 Missense_Mutation p.Y725C 0.14 deleterious(0) unknown(0) TCGA-IB-7651-01 11 3793016 3793016 C T NUP98 Missense_Mutation p.G249D 0.13 deleterious(0.01) possibly_damaging(0.628) TCGA-IB-7651-01 11 3800140 3800140 G A NUP98 Silent p.N106N 0.11 TCGA-IB-7651-01 11 380400 380400 G A B4GALNT4 Missense_Mutation p.V942M 0.23 tolerated(0.54) unknown(0) TCGA-IB-7651-01 11 380410 380410 G A B4GALNT4 Missense_Mutation p.R945H 0.19 deleterious(0) unknown(0) TCGA-IB-7651-01 11 396980 396980 G A PKP3 Missense_Mutation p.R160K 0.25 tolerated(0.23) probably_damaging(0.99) TCGA-IB-7651-01 11 399008 399008 C T PKP3 Missense_Mutation p.A362V 0.15 deleterious(0.01) possibly_damaging(0.741) TCGA-IB-7651-01 11 40136372 40136372 T G LRRC4C Missense_Mutation p.T491P 0.15 tolerated(0.4) benign(0.028) TCGA-IB-7651-01 11 405971 405971 G A SIGIRR Silent p.D386D 0.16 TCGA-IB-7651-01 11 407518 407518 G A SIGIRR Missense_Mutation p.R178C 0.12 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 11 407555 407555 G A SIGIRR Silent p.Y165Y 0.17 TCGA-IB-7651-01 11 4128754 4128754 G A RRM1 Missense_Mutation p.A126T 0.18 tolerated_low_confidence(0.1) benign(0.027) TCGA-IB-7651-01 11 418966 418966 T C ANO9 Missense_Mutation p.H653R 0.18 deleterious(0.02) probably_damaging(0.996) TCGA-IB-7651-01 11 420737 420737 G A ANO9 Silent p.F538F 0.17 TCGA-IB-7651-01 11 43342961 43342961 A C API5 Missense_Mutation p.D109A 0.17 deleterious(0.01) possibly_damaging(0.791) TCGA-IB-7651-01 11 43345051 43345051 G A API5 Silent p.Q205Q 0.16 TCGA-IB-7651-01 11 43345158 43345158 G A API5 Missense_Mutation p.C241Y 0.07 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 11 43351531 43351531 C T API5 Missense_Mutation p.R382W 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 43357578 43357578 G T API5 Intron 0.21 TCGA-IB-7651-01 11 43418341 43418341 C T TTC17 Missense_Mutation p.A249V 0.15 tolerated(1) benign(0.034) TCGA-IB-7651-01 11 43418898 43418898 C T TTC17 Missense_Mutation p.H259Y 0.17 tolerated(0.09) benign(0.296) TCGA-IB-7651-01 11 43776590 43776590 C T HSD17B12 Intron 0.12 TCGA-IB-7651-01 11 43837021 43837021 A G HSD17B12 Silent p.E142E 0.18 TCGA-IB-7651-01 11 4389036 4389036 G T OR52B4 Missense_Mutation p.L164I 0.17 deleterious(0.01) probably_damaging(0.982) TCGA-IB-7651-01 11 44069708 44069708 C T ACCSL Missense_Mutation p.T41M 0.19 tolerated(0.11) benign(0) TCGA-IB-7651-01 11 44074969 44074969 G A ACCSL Missense_Mutation p.R321Q 0.18 deleterious(0.03) possibly_damaging(0.835) TCGA-IB-7651-01 11 44080142 44080142 G A ACCSL Missense_Mutation p.R506H 0.17 tolerated(0.2) benign(0.049) TCGA-IB-7651-01 11 44129365 44129365 C A EXT2 Missense_Mutation p.L68M 0.19 deleterious(0.03) probably_damaging(0.939) TCGA-IB-7651-01 11 44253909 44253909 C T EXT2 Missense_Mutation p.R590W 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 11 44296954 44296954 C T ALX4 Missense_Mutation p.V241M 0.19 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 11 44939520 44939520 C T TSPAN18 Intron 0.14 TCGA-IB-7651-01 11 45246288 45246288 T C PRDM11 Silent p.V421V 0.18 TCGA-IB-7651-01 11 45246517 45246517 C T PRDM11 3'UTR 0.12 TCGA-IB-7651-01 11 45265679 45265679 G T SYT13 Missense_Mutation p.S402Y 0.22 deleterious(0) benign(0.372) TCGA-IB-7651-01 11 45307687 45307687 G T SYT13 Nonsense_Mutation p.C24* 0.25 TCGA-IB-7651-01 11 45832503 45832503 G A SLC35C1 Missense_Mutation p.A238T 0.19 deleterious(0) probably_damaging(0.937) TCGA-IB-7651-01 11 45924210 45924210 G A MAPK8IP1 Missense_Mutation p.A298T 0.23 tolerated(0.43) benign(0.002) TCGA-IB-7651-01 11 45928146 45928146 C T C11orf94 Missense_Mutation p.E91K 0.15 deleterious(0) possibly_damaging(0.458) TCGA-IB-7651-01 11 45928432 45928432 C T C11orf94 Missense_Mutation p.G55S 0.14 deleterious(0.01) possibly_damaging(0.862) TCGA-IB-7651-01 11 45931662 45931662 G A PEX16 Missense_Mutation p.A340V 0.18 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-IB-7651-01 11 45948141 45948141 C A GYLTL1B Missense_Mutation p.A386D 0.19 deleterious(0.04) benign(0.045) TCGA-IB-7651-01 11 45992707 45992707 G A PHF21A Missense_Mutation p.A191V 0.21 tolerated(0.14) benign(0.184) TCGA-IB-7651-01 11 4608230 4608230 C A OR52I2 Missense_Mutation p.A63D 0.15 tolerated(0.2) benign(0.258) TCGA-IB-7651-01 11 4608988 4608988 G T OR52I2 Missense_Mutation p.A316S 0.09 deleterious(0.02) benign(0.034) TCGA-IB-7651-01 11 4615444 4615444 G A OR52I1 Missense_Mutation p.R59Q 0.22 deleterious(0) benign(0.008) TCGA-IB-7651-01 11 4615645 4615645 G A OR52I1 Missense_Mutation p.R126H 0.16 deleterious(0.02) benign(0.24) TCGA-IB-7651-01 11 4626372 4626372 G A TRIM68 Silent p.S121S 0.06 TCGA-IB-7651-01 11 4626710 4626710 C A TRIM68 Missense_Mutation p.A9S 0.15 tolerated(0.69) possibly_damaging(0.9) TCGA-IB-7651-01 11 46332593 46332593 G A CREB3L1 Silent p.V202V 0.19 TCGA-IB-7651-01 11 46341984 46341984 C T CREB3L1 Silent p.H476H 0.22 TCGA-IB-7651-01 11 46342045 46342045 G A CREB3L1 Missense_Mutation p.D497N 0.20 tolerated_low_confidence(0.24) benign(0) TCGA-IB-7651-01 11 46387834 46387834 C T DGKZ Missense_Mutation p.R10W 0.13 deleterious_low_confidence(0) benign(0.226) TCGA-IB-7651-01 11 46387913 46387913 G A DGKZ Missense_Mutation p.R36H 0.11 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-IB-7651-01 11 46399765 46399765 C A DGKZ Missense_Mutation p.A975D 0.17 tolerated(0.15) benign(0.002) TCGA-IB-7651-01 11 46404188 46404188 G A MDK Missense_Mutation p.G99D 0.24 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 46405113 46405113 G A MDK 3'UTR 0.17 TCGA-IB-7651-01 11 46418987 46418987 G A AMBRA1 3'UTR 0.15 TCGA-IB-7651-01 11 46419227 46419227 G A AMBRA1 Nonsense_Mutation p.R1134* 0.18 TCGA-IB-7651-01 11 46430125 46430125 G A AMBRA1 Missense_Mutation p.A1024V 0.17 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-IB-7651-01 11 4661117 4661117 G T OR51D1 Missense_Mutation p.G33W 0.20 deleterious(0.01) probably_damaging(0.981) TCGA-IB-7651-01 11 4661207 4661207 C T OR51D1 Missense_Mutation p.R63C 0.20 deleterious(0.04) possibly_damaging(0.577) TCGA-IB-7651-01 11 46637220 46637220 C T HARBI1 Missense_Mutation p.E190K 0.21 tolerated(0.32) probably_damaging(0.998) TCGA-IB-7651-01 11 46717607 46717607 G A ARHGAP1 Silent p.S17S 0.17 TCGA-IB-7651-01 11 46726961 46726961 C T ZNF408 Missense_Mutation p.R571C 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 11 4674108 4674108 C A OR51E1 Missense_Mutation p.L118M 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 46744800 46744800 C T F2 Silent p.C129C 0.04 TCGA-IB-7651-01 11 46771875 46771875 G A CKAP5 Missense_Mutation p.R1885W 0.18 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 11 46800054 46800054 G A CKAP5 Silent p.D843D 0.17 TCGA-IB-7651-01 11 46911059 46911059 G A LRP4 Silent p.N706N 0.20 TCGA-IB-7651-01 11 46914620 46914620 C A LRP4 Missense_Mutation p.R534M 0.19 deleterious(0) possibly_damaging(0.825) TCGA-IB-7651-01 11 4703289 4703289 A G OR51E2 Missense_Mutation p.F218S 0.20 tolerated(0.05) possibly_damaging(0.836) TCGA-IB-7651-01 11 47182794 47182794 A G C11orf49 Intron 0.18 TCGA-IB-7651-01 11 47186899 47186899 G A ARFGAP2 3'UTR 0.09 TCGA-IB-7651-01 11 47199390 47199390 C T PACSIN3 3'UTR 0.16 TCGA-IB-7651-01 11 47261518 47261518 G A ACP2 3'UTR 0.24 TCGA-IB-7651-01 11 47281365 47281365 C T NR1H3 Missense_Mutation p.P23S 0.14 tolerated_low_confidence(0.1) benign(0.002) TCGA-IB-7651-01 11 47282040 47282040 G A NR1H3 Missense_Mutation p.A105T 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 47296342 47296342 C A MADD Missense_Mutation p.F97L 0.22 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 11 47350777 47350777 C A MADD 3'UTR 0.17 TCGA-IB-7651-01 11 47355139 47355139 C A MYBPC3 Missense_Mutation p.E1053D 0.18 deleterious(0.04) possibly_damaging(0.61) TCGA-IB-7651-01 11 47360107 47360107 C T MYBPC3 Missense_Mutation p.G758S 0.16 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 11 47364609 47364609 C T MYBPC3 Silent p.V438V 0.14 TCGA-IB-7651-01 11 47371447 47371447 C T MYBPC3 Missense_Mutation p.V178M 0.15 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 11 47381477 47381477 C T SPI1 Missense_Mutation p.R87H 0.11 tolerated(0.06) probably_damaging(0.949) TCGA-IB-7651-01 11 47434981 47434981 G A SLC39A13 Missense_Mutation p.A190T 0.18 tolerated(0.45) benign(0.009) TCGA-IB-7651-01 11 47611561 47611561 C T C1QTNF4 Missense_Mutation p.E268K 0.08 tolerated(0.29) possibly_damaging(0.588) TCGA-IB-7651-01 11 47644304 47644304 G T MTCH2 Nonsense_Mutation p.Y258* 0.17 TCGA-IB-7651-01 11 47657112 47657112 C T MTCH2 Silent p.E97E 0.15 TCGA-IB-7651-01 11 47732006 47732006 G T AGBL2 Missense_Mutation p.P52H 0.17 tolerated_low_confidence(0.07) benign(0.027) TCGA-IB-7651-01 11 47735874 47735874 A C AGBL2 Missense_Mutation p.F20C 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IB-7651-01 11 47736258 47736258 A C AGBL2 5'UTR 0.23 TCGA-IB-7651-01 11 47738964 47738964 A C FNBP4 3'UTR 0.17 TCGA-IB-7651-01 11 47772826 47772826 G A FNBP4 Silent p.G218G 0.17 TCGA-IB-7651-01 11 47830003 47830003 A G NUP160 Missense_Mutation p.Y774H 0.17 tolerated(0.54) benign(0.001) TCGA-IB-7651-01 11 47858498 47858498 G A NUP160 Missense_Mutation p.H295Y 0.20 tolerated(0.09) possibly_damaging(0.603) TCGA-IB-7651-01 11 4790217 4790217 T C OR51F1 Missense_Mutation p.T311A 0.20 tolerated(0.88) benign(0.002) TCGA-IB-7651-01 11 48149438 48149438 G A PTPRJ Silent p.K400K 0.04 TCGA-IB-7651-01 11 48161167 48161167 A G PTPRJ Missense_Mutation p.N761S 0.17 tolerated(0.11) benign(0.032) TCGA-IB-7651-01 11 4825055 4825055 C T OR52R1 Missense_Mutation p.A186T 0.19 deleterious(0.02) probably_damaging(1) TCGA-IB-7651-01 11 48266694 48266694 G T OR4X2 Missense_Mutation p.Q13H 0.19 deleterious(0.01) benign(0.004) TCGA-IB-7651-01 11 48267073 48267073 G T OR4X2 Missense_Mutation p.A140S 0.19 tolerated(0.55) possibly_damaging(0.859) TCGA-IB-7651-01 11 48267277 48267277 G T OR4X2 Missense_Mutation p.A208S 0.14 tolerated(0.28) benign(0.034) TCGA-IB-7651-01 11 48286112 48286112 G A OR4X1 Missense_Mutation p.A234T 0.18 deleterious(0.01) probably_damaging(0.979) TCGA-IB-7651-01 11 488249 488249 C T PTDSS2 Silent p.F224F 0.17 TCGA-IB-7651-01 11 489663 489663 C T PTDSS2 Silent p.L349L 0.32 TCGA-IB-7651-01 11 4903513 4903513 C T OR51T1 Silent p.I155I 0.17 TCGA-IB-7651-01 11 4903783 4903783 C A OR51T1 Missense_Mutation p.F245L 0.16 tolerated(1) benign(0.027) TCGA-IB-7651-01 11 49168261 49168261 G A FOLH1 3'UTR 0.20 TCGA-IB-7651-01 11 49175791 49175791 C A FOLH1 Missense_Mutation p.S626I 0.19 tolerated(0.05) benign(0.074) TCGA-IB-7651-01 11 49204705 49204705 G T FOLH1 Missense_Mutation p.L306I 0.17 deleterious(0.02) benign(0.358) TCGA-IB-7651-01 11 4929297 4929297 G T OR51A7 Missense_Mutation p.R233M 0.16 deleterious(0.02) probably_damaging(0.912) TCGA-IB-7651-01 11 494985 494985 C A RNH1 Missense_Mutation p.S399I 0.08 deleterious(0.01) probably_damaging(0.989) TCGA-IB-7651-01 11 49598003 49598003 T G RP11-707M1.1 RNA 0.15 TCGA-IB-7651-01 11 49831766 49831766 G A RP11-707M1.1 RNA 0.16 TCGA-IB-7651-01 11 5009471 5009471 C A MMP26 Silent p.I10I 0.17 TCGA-IB-7651-01 11 5013249 5013249 G T MMP26 Missense_Mutation p.Q217H 0.15 tolerated(0.56) benign(0.167) TCGA-IB-7651-01 11 5013323 5013323 C T MMP26 Missense_Mutation p.A242V 0.07 tolerated(0.34) benign(0.003) TCGA-IB-7651-01 11 5079958 5079958 G T OR52E2 Silent p.I300I 0.21 TCGA-IB-7651-01 11 51411541 51411541 C T OR4A5 Silent p.T285T 0.17 TCGA-IB-7651-01 11 51411819 51411819 C A OR4A5 Missense_Mutation p.G193C 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IB-7651-01 11 51411931 51411931 C T OR4A5 Silent p.A155A 0.19 TCGA-IB-7651-01 11 51515910 51515910 C A OR4C46 Missense_Mutation p.A210D 0.18 deleterious_low_confidence(0) benign(0.018) TCGA-IB-7651-01 11 51516165 51516165 C T OR4C46 Missense_Mutation p.A295V 0.19 deleterious_low_confidence(0.03) benign(0.244) TCGA-IB-7651-01 11 5153029 5153029 G A OR52A5 Missense_Mutation p.L282F 0.18 tolerated(0.17) benign(0.139) TCGA-IB-7651-01 11 5173380 5173380 C T OR52A1 Missense_Mutation p.A74T 0.18 tolerated(0.08) benign(0.019) TCGA-IB-7651-01 11 5221587 5221587 C T OR51V1 Missense_Mutation p.G115D 0.16 deleterious(0.05) benign(0.33) TCGA-IB-7651-01 11 5221811 5221811 G T OR51V1 Missense_Mutation p.F40L 0.19 tolerated(0.27) benign(0.016) TCGA-IB-7651-01 11 5246706 5246706 T C HBB 3'UTR 0.17 TCGA-IB-7651-01 11 5248009 5248009 C T HBB Nonsense_Mutation p.W38* 0.17 TCGA-IB-7651-01 11 5269531 5269531 T C HBG1 3'UTR 0.12 TCGA-IB-7651-01 11 5322876 5322876 T C OR51B4 Missense_Mutation p.I101V 0.15 deleterious(0.05) benign(0.226) TCGA-IB-7651-01 11 533503 533503 C T HRAS Missense_Mutation p.A134T 0.16 deleterious(0) probably_damaging(0.978) TCGA-IB-7651-01 11 5364599 5364599 A G OR51B5 Silent p.N52N 0.20 TCGA-IB-7651-01 11 5411272 5411272 T C OR51M1 Missense_Mutation p.V215A 0.19 tolerated(0.07) possibly_damaging(0.811) TCGA-IB-7651-01 11 5411487 5411487 C T OR51M1 Missense_Mutation p.L287F 0.18 tolerated(0.19) benign(0.06) TCGA-IB-7651-01 11 5443517 5443517 C T OR51Q1 Silent p.I29I 0.03 TCGA-IB-7651-01 11 5444251 5444251 T C OR51Q1 Missense_Mutation p.V274A 0.05 tolerated(0.07) possibly_damaging(0.734) TCGA-IB-7651-01 11 5475109 5475109 C T OR51I2 Missense_Mutation p.R131C 0.18 deleterious(0.02) possibly_damaging(0.77) TCGA-IB-7651-01 11 5475516 5475516 G A OR51I2 Silent p.K266K 0.20 TCGA-IB-7651-01 11 5510879 5510879 A G OR52D1 Missense_Mutation p.K315E 0.23 tolerated(0.06) benign(0.156) TCGA-IB-7651-01 11 55135508 55135508 A C OR4A15 Missense_Mutation p.E50A 0.17 tolerated_low_confidence(0.22) benign(0.017) TCGA-IB-7651-01 11 55135947 55135947 C A OR4A15 Missense_Mutation p.F196L 0.17 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-IB-7651-01 11 55136198 55136198 T C OR4A15 Missense_Mutation p.V280A 0.18 deleterious_low_confidence(0.01) benign(0.411) TCGA-IB-7651-01 11 5529987 5529987 C T UBQLN3 Missense_Mutation p.A268T 0.18 deleterious(0) possibly_damaging(0.852) TCGA-IB-7651-01 11 5530082 5530082 C T UBQLN3 Missense_Mutation p.S236N 0.19 tolerated(0.7) benign(0.113) TCGA-IB-7651-01 11 5530259 5530259 A T UBQLN3 Missense_Mutation p.I177N 0.15 deleterious(0) probably_damaging(0.94) TCGA-IB-7651-01 11 5530451 5530451 C A UBQLN3 Missense_Mutation p.S113I 0.15 deleterious(0.03) possibly_damaging(0.645) TCGA-IB-7651-01 11 5536814 5536814 T G UBQLNL Missense_Mutation p.Q286H 0.20 tolerated(0.19) benign(0.003) TCGA-IB-7651-01 11 5537044 5537044 C T UBQLNL Missense_Mutation p.E210K 0.18 deleterious(0) possibly_damaging(0.522) TCGA-IB-7651-01 11 55371093 55371093 T C OR4C11 Missense_Mutation p.I253V 0.20 tolerated(0.05) benign(0.11) TCGA-IB-7651-01 11 55371242 55371242 G A OR4C11 Missense_Mutation p.A203V 0.09 tolerated(0.17) benign(0.026) TCGA-IB-7651-01 11 5537124 5537124 C T UBQLNL Missense_Mutation p.R183Q 0.04 tolerated(0.83) benign(0.003) TCGA-IB-7651-01 11 55406127 55406127 A C OR4P4 Missense_Mutation p.Q98H 0.19 deleterious(0.01) probably_damaging(0.98) TCGA-IB-7651-01 11 55418546 55418546 C T OR4S2 Missense_Mutation p.P56L 0.13 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 11 55541337 55541337 C A OR5D13 Missense_Mutation p.L142I 0.17 deleterious(0.03) possibly_damaging(0.461) TCGA-IB-7651-01 11 55587163 55587163 G A OR5D18 Missense_Mutation p.D20N 0.24 deleterious(0.01) benign(0.078) TCGA-IB-7651-01 11 55587930 55587930 C T OR5D18 Silent p.A275A 0.20 TCGA-IB-7651-01 11 55595572 55595572 G A OR5L2 Missense_Mutation p.R293K 0.22 deleterious(0.01) possibly_damaging(0.452) TCGA-IB-7651-01 11 55606350 55606350 G A OR5D16 Silent p.V41V 0.17 TCGA-IB-7651-01 11 55606577 55606577 T G OR5D16 Missense_Mutation p.F117C 0.20 deleterious(0) possibly_damaging(0.593) TCGA-IB-7651-01 11 55653575 55653575 C A TRIM51 Intron 0.22 TCGA-IB-7651-01 11 55658776 55658776 T C TRIM51 Missense_Mutation p.W343R 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 55658916 55658916 C T TRIM51 Silent p.C389C 0.15 TCGA-IB-7651-01 11 55659283 55659283 A C TRIM51 3'UTR 0.21 TCGA-IB-7651-01 11 5566168 5566168 C T OR52H1 Missense_Mutation p.A196T 0.17 deleterious(0.01) possibly_damaging(0.826) TCGA-IB-7651-01 11 55681230 55681230 A C OR5W2 Missense_Mutation p.F277V 0.15 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 11 55761759 55761759 A G OR5F1 Missense_Mutation p.F115L 0.16 tolerated(1) benign(0.079) TCGA-IB-7651-01 11 55798285 55798285 C T OR5AS1 Missense_Mutation p.L131F 0.17 deleterious(0) possibly_damaging(0.793) TCGA-IB-7651-01 11 55798820 55798820 G T OR5AS1 Missense_Mutation p.G309V 0.13 tolerated(0.53) benign(0.001) TCGA-IB-7651-01 11 55873329 55873329 G T OR8H2 Missense_Mutation p.D271Y 0.19 deleterious(0.01) probably_damaging(0.991) TCGA-IB-7651-01 11 55890184 55890184 T C OR8H3 Silent p.C112C 0.17 TCGA-IB-7651-01 11 55890321 55890321 T C OR8H3 Missense_Mutation p.V158A 0.09 tolerated(0.13) benign(0.05) TCGA-IB-7651-01 11 55905003 55905003 T A OR8J3 Missense_Mutation p.R64S 0.19 tolerated(0.33) benign(0.371) TCGA-IB-7651-01 11 55927041 55927041 G T OR8K5 Missense_Mutation p.F251L 0.19 tolerated_low_confidence(0.12) benign(0.094) TCGA-IB-7651-01 11 55927351 55927351 T G OR8K5 Missense_Mutation p.Q148P 0.14 tolerated_low_confidence(1) benign(0) TCGA-IB-7651-01 11 5602224 5602224 C T OR52B6 Silent p.L40L 0.18 TCGA-IB-7651-01 11 5602323 5602323 G A OR52B6 Missense_Mutation p.A73T 0.19 tolerated(0.1) benign(0.026) TCGA-IB-7651-01 11 56043515 56043515 G A OR5T1 Missense_Mutation p.R134H 0.15 deleterious(0.04) benign(0.127) TCGA-IB-7651-01 11 56127922 56127922 C T OR8J1 Missense_Mutation p.A67V 0.19 deleterious(0.01) possibly_damaging(0.589) TCGA-IB-7651-01 11 56143190 56143190 T G OR8U1 Missense_Mutation p.F31V 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 11 56185131 56185131 T G OR5R1 Missense_Mutation p.H193P 0.22 deleterious(0) possibly_damaging(0.887) TCGA-IB-7651-01 11 56230077 56230077 C T OR5M9 Silent p.E267E 0.17 TCGA-IB-7651-01 11 56237249 56237249 T C OR5M3 Missense_Mutation p.H242R 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 11 56237597 56237597 T G OR5M3 Missense_Mutation p.N126T 0.16 deleterious(0.01) benign(0.183) TCGA-IB-7651-01 11 5626734 5626734 G A TRIM6 Silent p.S257S 0.19 TCGA-IB-7651-01 11 56310088 56310088 A G OR5M11 Missense_Mutation p.S216P 0.18 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 11 56310189 56310189 G A OR5M11 Missense_Mutation p.P182L 0.15 deleterious(0.01) probably_damaging(0.916) TCGA-IB-7651-01 11 56310287 56310287 G A OR5M11 Silent p.V149V 0.18 TCGA-IB-7651-01 11 56344805 56344805 A G OR5M10 Silent p.H131H 0.20 TCGA-IB-7651-01 11 563541 563541 C T RASSF7 Intron 0.21 TCGA-IB-7651-01 11 56756842 56756842 G A OR5AK2 Missense_Mutation p.G152S 0.05 tolerated(0.07) possibly_damaging(0.887) TCGA-IB-7651-01 11 56756950 56756950 T G OR5AK2 Missense_Mutation p.S188A 0.19 tolerated(0.07) benign(0.246) TCGA-IB-7651-01 11 5687305 5687305 C A TRIM5 Missense_Mutation p.E258D 0.19 deleterious(0.02) benign(0.02) TCGA-IB-7651-01 11 56949909 56949909 G A LRRC55 Missense_Mutation p.G181E 0.21 tolerated(0.45) benign(0.004) TCGA-IB-7651-01 11 56950046 56950046 G A LRRC55 Missense_Mutation p.G227S 0.06 tolerated(0.12) possibly_damaging(0.783) TCGA-IB-7651-01 11 5699533 5699533 C T TRIM5 Silent p.T215T 0.09 TCGA-IB-7651-01 11 57003238 57003238 T C APLNR 3'UTR 0.15 TCGA-IB-7651-01 11 57068363 57068363 G A TNKS1BP1 Silent p.S1708S 0.18 TCGA-IB-7651-01 11 57076499 57076499 G A TNKS1BP1 Missense_Mutation p.S1229F 0.20 tolerated(0.05) possibly_damaging(0.864) TCGA-IB-7651-01 11 57076904 57076904 A G TNKS1BP1 Missense_Mutation p.V1094A 0.22 tolerated(0.6) probably_damaging(0.917) TCGA-IB-7651-01 11 57077332 57077332 C T TNKS1BP1 Silent p.E951E 0.18 TCGA-IB-7651-01 11 57098390 57098390 C T SSRP1 Missense_Mutation p.G412E 0.14 tolerated(0.08) benign(0.033) TCGA-IB-7651-01 11 57102123 57102123 C T SSRP1 Splice_Site p.X19_splice 0.17 TCGA-IB-7651-01 11 57156117 57156117 C T PRG2 Missense_Mutation p.R144Q 0.18 tolerated(0.8) benign(0.005) TCGA-IB-7651-01 11 57193571 57193571 G A SLC43A3 Silent p.G25G 0.20 TCGA-IB-7651-01 11 5730920 5730920 T C TRIM22 3'UTR 0.12 TCGA-IB-7651-01 11 57373534 57373534 G T SERPING1 Missense_Mutation p.S246I 0.17 tolerated(0.05) benign(0.412) TCGA-IB-7651-01 11 57457546 57457546 G A ZDHHC5 Missense_Mutation p.R143H 0.18 deleterious(0) possibly_damaging(0.851) TCGA-IB-7651-01 11 57506148 57506148 C T TMX2 Missense_Mutation p.R152W 0.16 deleterious(0) possibly_damaging(0.728) TCGA-IB-7651-01 11 57564342 57564342 G A CTNND1 Silent p.E278E 0.18 TCGA-IB-7651-01 11 5776325 5776325 C A OR52N4 Missense_Mutation p.L119I 0.05 tolerated(0.16) possibly_damaging(0.574) TCGA-IB-7651-01 11 57799000 57799000 G A OR6Q1 Silent p.S192S 0.04 TCGA-IB-7651-01 11 57982253 57982253 A G OR1S1 Missense_Mutation p.N13D 0.17 tolerated(0.64) benign(0.002) TCGA-IB-7651-01 11 57982274 57982274 A G OR1S1 Missense_Mutation p.T20A 0.17 deleterious(0.01) possibly_damaging(0.694) TCGA-IB-7651-01 11 5799527 5799527 A G OR52N5 Missense_Mutation p.V113A 0.20 deleterious(0.01) possibly_damaging(0.593) TCGA-IB-7651-01 11 57995968 57995968 T C OR10Q1 Missense_Mutation p.Y127C 0.19 deleterious(0.02) probably_damaging(0.966) TCGA-IB-7651-01 11 5799696 5799696 T C OR52N5 Missense_Mutation p.I57V 0.05 tolerated(0.38) benign(0.054) TCGA-IB-7651-01 11 5799846 5799846 A C OR52N5 Missense_Mutation p.L7V 0.21 tolerated_low_confidence(0.93) benign(0.001) TCGA-IB-7651-01 11 58170524 58170524 C T OR5B3 Missense_Mutation p.R120H 0.16 deleterious_low_confidence(0.04) benign(0.152) TCGA-IB-7651-01 11 58206921 58206921 G A OR5B12 Missense_Mutation p.A235V 0.20 deleterious_low_confidence(0) possibly_damaging(0.869) TCGA-IB-7651-01 11 58207122 58207122 C A OR5B12 Missense_Mutation p.R168I 0.15 tolerated_low_confidence(0.05) benign(0.029) TCGA-IB-7651-01 11 58343319 58343319 G A LPXN Intron 0.16 TCGA-IB-7651-01 11 58381795 58381795 C T ZFP91 Nonsense_Mutation p.R361* 0.13 TCGA-IB-7651-01 11 58384868 58384868 G A ZFP91 Missense_Mutation p.A468T 0.21 deleterious(0.01) possibly_damaging(0.878) TCGA-IB-7651-01 11 5842359 5842359 G A OR52N2 Missense_Mutation p.R265H 0.18 deleterious(0.05) benign(0.081) TCGA-IB-7651-01 11 58723238 58723238 T A GLYATL1 Missense_Mutation p.V247D 0.16 tolerated(0.16) benign(0.007) TCGA-IB-7651-01 11 587346 587346 C A PHRF1 Missense_Mutation p.S101Y 0.25 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 11 5878211 5878211 T C OR52E8 Missense_Mutation p.K241R 0.16 deleterious(0.03) possibly_damaging(0.533) TCGA-IB-7651-01 11 58920006 58920006 A G FAM111A Missense_Mutation p.T289A 0.16 tolerated(0.52) benign(0.012) TCGA-IB-7651-01 11 58920677 58920677 C T FAM111A Silent p.V512V 0.18 TCGA-IB-7651-01 11 58949753 58949753 G A DTX4 Silent p.K251K 0.23 TCGA-IB-7651-01 11 58978424 58978424 G A MPEG1 Missense_Mutation p.R639W 0.21 deleterious(0.01) possibly_damaging(0.724) TCGA-IB-7651-01 11 59189727 59189727 C T OR5A2 Missense_Mutation p.G234S 0.17 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 11 59211369 59211369 C T OR5A1 Missense_Mutation p.T243M 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 59271327 59271327 C A OR4D11 Silent p.S93S 0.19 TCGA-IB-7651-01 11 59560891 59560891 G A STX3 Silent p.E193E 0.10 TCGA-IB-7651-01 11 59560935 59560935 T C STX3 Missense_Mutation p.I208T 0.16 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 11 59612937 59612937 C T GIF 5'UTR 0.04 TCGA-IB-7651-01 11 59620480 59620480 C T TCN1 Missense_Mutation p.E424K 0.18 deleterious(0) possibly_damaging(0.844) TCGA-IB-7651-01 11 59631526 59631526 G T TCN1 Missense_Mutation p.P38H 0.08 tolerated(0.18) possibly_damaging(0.478) TCGA-IB-7651-01 11 59828619 59828619 C T MS4A3 Intron 0.15 TCGA-IB-7651-01 11 59857209 59857209 C T MS4A2 Missense_Mutation p.S34F 0.20 tolerated(0.07) benign(0.308) TCGA-IB-7651-01 11 59857283 59857283 G A MS4A2 Missense_Mutation p.E59K 0.24 tolerated(0.07) possibly_damaging(0.591) TCGA-IB-7651-01 11 59857875 59857875 A G MS4A2 Missense_Mutation p.I85V 0.19 tolerated(0.28) benign(0.044) TCGA-IB-7651-01 11 59939538 59939538 T C MS4A6A 3'Flank 0.17 TCGA-IB-7651-01 11 59949188 59949188 G A MS4A6A Missense_Mutation p.P33S 0.16 tolerated(0.26) benign(0.259) TCGA-IB-7651-01 11 6007343 6007343 C T OR52L1 Missense_Mutation p.G273E 0.15 deleterious(0.02) probably_damaging(1) TCGA-IB-7651-01 11 60105331 60105331 G A MS4A6E Missense_Mutation p.E89K 0.18 tolerated(1) benign(0) TCGA-IB-7651-01 11 60150639 60150639 G A MS4A7 Missense_Mutation p.G9R 0.20 tolerated(0.44) benign(0.011) TCGA-IB-7651-01 11 60184368 60184368 G A MS4A14 Missense_Mutation p.D676N 0.19 tolerated(0.28) benign(0.115) TCGA-IB-7651-01 11 60234492 60234492 G A MS4A1 Missense_Mutation p.V212I 0.20 tolerated(0.16) possibly_damaging(0.756) TCGA-IB-7651-01 11 60271185 60271185 C T MS4A12 Silent p.S161S 0.18 TCGA-IB-7651-01 11 60310080 60310080 C T MS4A13 3'UTR 0.13 TCGA-IB-7651-01 11 60689496 60689496 C T TMEM109 Silent p.A197A 0.15 TCGA-IB-7651-01 11 60696112 60696112 C T TMEM132A Silent p.G182G 0.07 TCGA-IB-7651-01 11 60696127 60696127 G T TMEM132A Missense_Mutation p.E187D 0.16 deleterious(0.02) possibly_damaging(0.768) TCGA-IB-7651-01 11 60697983 60697983 A G TMEM132A Missense_Mutation p.I290V 0.08 tolerated(1) benign(0.023) TCGA-IB-7651-01 11 60705372 60705372 C T SLC15A3 Missense_Mutation p.G521R 0.18 tolerated(0.53) benign(0.04) TCGA-IB-7651-01 11 60739244 60739244 C T CD6 5'UTR 0.13 TCGA-IB-7651-01 11 60886791 60886791 T C CD5 Silent p.G183G 0.18 TCGA-IB-7651-01 11 60892563 60892563 T C CD5 Missense_Mutation p.S447P 0.17 deleterious(0.05) benign(0.103) TCGA-IB-7651-01 11 60899816 60899816 C T VPS37C Missense_Mutation p.V182I 0.14 tolerated(0.27) benign(0.046) TCGA-IB-7651-01 11 61026092 61026092 C T VWCE 3'UTR 0.10 TCGA-IB-7651-01 11 61026582 61026582 C A VWCE Missense_Mutation p.Q811H 0.09 tolerated_low_confidence(0.13) benign(0.004) TCGA-IB-7651-01 11 61042028 61042028 G A VWCE Silent p.Y508Y 0.18 TCGA-IB-7651-01 11 61048181 61048181 C A VWCE Missense_Mutation p.K413N 0.16 tolerated(0.21) benign(0.079) TCGA-IB-7651-01 11 61079518 61079518 G A DDB1 Missense_Mutation p.T703I 0.08 deleterious(0.01) possibly_damaging(0.562) TCGA-IB-7651-01 11 61080983 61080983 C T DDB1 Missense_Mutation p.G686D 0.17 deleterious(0) possibly_damaging(0.761) TCGA-IB-7651-01 11 61135318 61135318 T G TMEM138 Intron 0.19 TCGA-IB-7651-01 11 61295552 61295552 T C SYT7 Missense_Mutation p.T228A 0.07 tolerated(0.07) benign(0.028) TCGA-IB-7651-01 11 61323619 61323619 G T SYT7 Missense_Mutation p.T31N 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.607) TCGA-IB-7651-01 11 61404371 61404371 G A RPLP0P2 RNA 0.19 TCGA-IB-7651-01 11 61490390 61490390 T C DAGLA Missense_Mutation p.Y123H 0.17 tolerated(0.07) probably_damaging(0.996) TCGA-IB-7651-01 11 61498802 61498802 G A DAGLA Missense_Mutation p.R288H 0.19 tolerated(0.32) possibly_damaging(0.65) TCGA-IB-7651-01 11 61507115 61507115 A C DAGLA Missense_Mutation p.H612P 0.18 deleterious(0.04) probably_damaging(0.993) TCGA-IB-7651-01 11 61537791 61537791 G T MYRF Silent p.P178P 0.15 TCGA-IB-7651-01 11 61543861 61543861 G A MYRF Missense_Mutation p.A486T 0.20 deleterious(0) probably_damaging(0.952) TCGA-IB-7651-01 11 61551832 61551832 G T MYRF Missense_Mutation p.S1092I 0.13 tolerated(0.05) benign(0.008) TCGA-IB-7651-01 11 61580775 61580775 C A FADS1 Missense_Mutation p.M142I 0.18 deleterious(0.01) benign(0.373) TCGA-IB-7651-01 11 61644341 61644341 A T FADS3 Missense_Mutation p.V327D 0.19 deleterious(0) possibly_damaging(0.609) TCGA-IB-7651-01 11 61645639 61645639 A G FADS3 Missense_Mutation p.Y266H 0.17 deleterious(0) possibly_damaging(0.903) TCGA-IB-7651-01 11 61727416 61727416 C T BEST1 Missense_Mutation p.P274L 0.11 deleterious(0) benign(0.09) TCGA-IB-7651-01 11 61917621 61917621 C T INCENP Silent p.S828S 0.18 TCGA-IB-7651-01 11 61919402 61919402 G A INCENP Missense_Mutation p.G904D 0.15 deleterious(0.03) benign(0.42) TCGA-IB-7651-01 11 61960966 61960966 A G SCGB1D1 3'UTR 0.23 TCGA-IB-7651-01 11 61977935 61977935 G A SCGB2A1 Missense_Mutation p.D36N 0.16 tolerated(0.58) possibly_damaging(0.831) TCGA-IB-7651-01 11 62064997 62064997 C T SCGB1D4 Silent p.K63K 0.19 TCGA-IB-7651-01 11 62284073 62284073 G A AHNAK 3'UTR 0.19 TCGA-IB-7651-01 11 62284885 62284885 G A AHNAK Silent p.F5668F 0.21 TCGA-IB-7651-01 11 62285051 62285051 A C AHNAK Missense_Mutation p.F5613C 0.20 probably_damaging(0.917) TCGA-IB-7651-01 11 62285755 62285755 A G AHNAK Silent p.G5378G 0.17 TCGA-IB-7651-01 11 62285818 62285818 G A AHNAK Silent p.N5357N 0.18 TCGA-IB-7651-01 11 62286943 62286943 A G AHNAK Silent p.F4982F 0.18 TCGA-IB-7651-01 11 62287933 62287933 C T AHNAK Missense_Mutation p.M4652I 0.16 benign(0.356) TCGA-IB-7651-01 11 62290929 62290929 G T AHNAK Missense_Mutation p.L3654M 0.20 probably_damaging(0.937) TCGA-IB-7651-01 11 62291340 62291340 G T AHNAK Missense_Mutation p.L3517I 0.22 benign(0.025) TCGA-IB-7651-01 11 62291895 62291895 G T AHNAK Missense_Mutation p.P3332T 0.21 possibly_damaging(0.803) TCGA-IB-7651-01 11 62293900 62293900 G A AHNAK Silent p.P2663P 0.18 TCGA-IB-7651-01 11 62295806 62295806 G A AHNAK Missense_Mutation p.P2028L 0.17 probably_damaging(0.962) TCGA-IB-7651-01 11 62299043 62299043 G T AHNAK Missense_Mutation p.P949H 0.15 probably_damaging(1) TCGA-IB-7651-01 11 62299103 62299103 A G AHNAK Missense_Mutation p.L929P 0.15 probably_damaging(0.999) TCGA-IB-7651-01 11 62299523 62299523 G A AHNAK Missense_Mutation p.A789V 0.17 benign(0.03) TCGA-IB-7651-01 11 62301544 62301544 G A AHNAK Silent p.S115S 0.16 TCGA-IB-7651-01 11 62327638 62327638 C A EEF1G Missense_Mutation p.R353M 0.18 deleterious(0) probably_damaging(0.947) TCGA-IB-7651-01 11 62334931 62334931 G T EEF1G Missense_Mutation p.P198T 0.20 deleterious(0.02) possibly_damaging(0.513) TCGA-IB-7651-01 11 62341389 62341389 G A EEF1G 5'UTR 0.19 TCGA-IB-7651-01 11 62346472 62346472 G A TUT1 Silent p.L279L 0.16 TCGA-IB-7651-01 11 62373565 62373565 C T EML3 Silent p.G542G 0.14 TCGA-IB-7651-01 11 62373584 62373584 C T EML3 Missense_Mutation p.R536H 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-IB-7651-01 11 62376231 62376231 C T EML3 Missense_Mutation p.A326T 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 11 62382344 62382344 G T ROM1 3'UTR 0.18 TCGA-IB-7651-01 11 62384603 62384603 G A B3GAT3 Silent p.V158V 0.16 TCGA-IB-7651-01 11 62388054 62388054 G A B3GAT3 Missense_Mutation p.L58F 0.28 tolerated(0.06) possibly_damaging(0.602) TCGA-IB-7651-01 11 6238932 6238932 A G FAM160A2 Silent p.G642G 0.21 TCGA-IB-7651-01 11 62393376 62393376 A G GANAB Missense_Mutation p.S938P 0.12 tolerated(0.23) benign(0.113) TCGA-IB-7651-01 11 6239851 6239851 C A FAM160A2 Nonsense_Mutation p.E472* 0.19 TCGA-IB-7651-01 11 62400663 62400663 C A GANAB Missense_Mutation p.K259N 0.21 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 11 62414372 62414372 A G INTS5 3'UTR 0.19 TCGA-IB-7651-01 11 62416125 62416125 G A INTS5 Missense_Mutation p.A476V 0.18 tolerated(0.16) possibly_damaging(0.511) TCGA-IB-7651-01 11 62417038 62417038 C T INTS5 Missense_Mutation p.A172T 0.18 deleterious(0.01) benign(0.004) TCGA-IB-7651-01 11 62417472 62417472 C A RP11-831H9.11 Splice_Site p.X88_splice 0.20 TCGA-IB-7651-01 11 6244424 6244424 T C FAM160A2 Silent p.R274R 0.23 TCGA-IB-7651-01 11 62444433 62444433 G A UBXN1 Silent p.A232A 0.09 TCGA-IB-7651-01 11 6245399 6245399 G A FAM160A2 Missense_Mutation p.T73I 0.19 deleterious(0.02) possibly_damaging(0.676) TCGA-IB-7651-01 11 62472966 62472966 C T BSCL2 Missense_Mutation p.V71I 0.21 tolerated(0.52) benign(0.099) TCGA-IB-7651-01 11 62482812 62482812 G T HNRNPUL2 Silent p.R735R 0.18 TCGA-IB-7651-01 11 62491420 62491420 C A HNRNPUL2 Missense_Mutation p.E239D 0.04 tolerated(0.4) benign(0.351) TCGA-IB-7651-01 11 62545792 62545792 G A TAF6L Missense_Mutation p.A141T 0.14 tolerated(0.59) benign(0.03) TCGA-IB-7651-01 11 62549675 62549675 C T TAF6L Missense_Mutation p.P233S 0.17 tolerated(0.46) benign(0.013) TCGA-IB-7651-01 11 62549768 62549768 C T TAF6L Missense_Mutation p.R264W 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 62557503 62557503 G A TMEM179B Missense_Mutation p.R215H 0.22 tolerated(0.16) benign(0.004) TCGA-IB-7651-01 11 6261612 6261612 C T CNGA4 Silent p.F196F 0.18 TCGA-IB-7651-01 11 62620486 62620486 T C SLC3A2 5'Flank 0.18 TCGA-IB-7651-01 11 62751503 62751503 G A SLC22A6 Missense_Mutation p.S129F 0.13 deleterious(0.01) possibly_damaging(0.797) TCGA-IB-7651-01 11 62760994 62760994 G T SLC22A8 Silent p.I477I 0.19 TCGA-IB-7651-01 11 62782455 62782455 G A SLC22A8 Intron 0.18 TCGA-IB-7651-01 11 6291375 6291375 G T CCKBR Missense_Mutation p.S154I 0.19 deleterious(0) probably_damaging(0.969) TCGA-IB-7651-01 11 6292613 6292613 G A CCKBR Missense_Mutation p.R395H 0.10 deleterious(0.02) probably_damaging(0.917) TCGA-IB-7651-01 11 63257730 63257730 C T HRASLS5 Missense_Mutation p.R85K 0.18 tolerated_low_confidence(0.27) benign(0.001) TCGA-IB-7651-01 11 63283034 63283034 G A LGALS12 Splice_Site p.X239_splice 0.10 TCGA-IB-7651-01 11 63307081 63307081 C A RARRES3 Missense_Mutation p.H35N 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 63312164 63312164 C T RARRES3 Missense_Mutation p.R64C 0.11 deleterious(0.01) possibly_damaging(0.72) TCGA-IB-7651-01 11 63312262 63312262 G A RARRES3 Silent p.A96A 0.17 TCGA-IB-7651-01 11 63327622 63327622 C T HRASLS2 Missense_Mutation p.R18H 0.18 deleterious(0.04) probably_damaging(0.92) TCGA-IB-7651-01 11 63330814 63330814 G A HRASLS2 5'UTR 0.19 TCGA-IB-7651-01 11 6340679 6340679 T C PRKCDBP Missense_Mutation p.D167G 0.12 tolerated(0.06) possibly_damaging(0.674) TCGA-IB-7651-01 11 63487245 63487245 C A RTN3 Missense_Mutation p.S424Y 0.17 tolerated(0.91) benign(0.002) TCGA-IB-7651-01 11 63487781 63487781 C T RTN3 Missense_Mutation p.P603S 0.17 tolerated(0.08) benign(0.139) TCGA-IB-7651-01 11 63517644 63517644 G T RTN3 Missense_Mutation p.Q904H 0.19 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 11 63585407 63585407 C T C11orf84 Silent p.S86S 0.18 TCGA-IB-7651-01 11 63586402 63586402 G A C11orf84 Missense_Mutation p.D288N 0.22 tolerated_low_confidence(0.15) benign(0.003) TCGA-IB-7651-01 11 63667527 63667527 T C MARK2 Missense_Mutation p.V238A 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 63676641 63676641 C T MARK2 Missense_Mutation p.R767W 0.15 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 11 63720001 63720001 G A NAA40 Missense_Mutation p.R125Q 0.17 tolerated(0.07) possibly_damaging(0.812) TCGA-IB-7651-01 11 63721914 63721914 C T NAA40 Missense_Mutation p.S226F 0.19 deleterious_low_confidence(0.01) unknown(0) TCGA-IB-7651-01 11 63742167 63742167 G T AP000721.4 Silent p.T5T 0.14 TCGA-IB-7651-01 11 63782725 63782725 G A MACROD1 Silent p.G182G 0.23 TCGA-IB-7651-01 11 63883842 63883842 C A FLRT1 Missense_Mutation p.L35M 0.24 tolerated(0.08) possibly_damaging(0.615) TCGA-IB-7651-01 11 63884115 63884115 C T FLRT1 Missense_Mutation p.P126S 0.21 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 11 63884481 63884481 C T FLRT1 Nonsense_Mutation p.Q248* 0.23 TCGA-IB-7651-01 11 63961682 63961682 G A STIP1 Missense_Mutation p.A81T 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 11 63978299 63978299 C T FERMT3 Missense_Mutation p.A126V 0.18 tolerated(0.09) benign(0.001) TCGA-IB-7651-01 11 63987987 63987987 G T FERMT3 Missense_Mutation p.S468I 0.23 tolerated(0.13) possibly_damaging(0.654) TCGA-IB-7651-01 11 64012183 64012183 C T PPP1R14B 3'UTR 0.17 TCGA-IB-7651-01 11 64021957 64021957 C A PLCB3 Missense_Mutation p.P57H 0.19 deleterious(0.01) possibly_damaging(0.869) TCGA-IB-7651-01 11 64022436 64022436 A G PLCB3 Missense_Mutation p.T105A 0.16 deleterious(0) probably_damaging(0.97) TCGA-IB-7651-01 11 64051656 64051656 C T BAD Missense_Mutation p.G62E 0.19 tolerated(0.2) benign(0.358) TCGA-IB-7651-01 11 64054213 64054213 C T GPR137 Missense_Mutation p.R131C 0.17 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 11 64055662 64055662 C T GPR137 Silent p.Y311Y 0.16 TCGA-IB-7651-01 11 64056115 64056115 G A GPR137 Missense_Mutation p.R376Q 0.16 deleterious(0) possibly_damaging(0.703) TCGA-IB-7651-01 11 64064699 64064699 G A KCNK4 Missense_Mutation p.R141Q 0.05 tolerated(0.84) possibly_damaging(0.837) TCGA-IB-7651-01 11 64082215 64082215 G A ESRRA Missense_Mutation p.A192T 0.19 tolerated(0.68) benign(0.001) TCGA-IB-7651-01 11 64109494 64109494 A C CCDC88B Missense_Mutation p.E235A 0.18 deleterious(0.01) benign(0.345) TCGA-IB-7651-01 11 64111522 64111522 G T CCDC88B Missense_Mutation p.E503D 0.15 tolerated(0.58) benign(0.055) TCGA-IB-7651-01 11 64111581 64111581 G T CCDC88B Missense_Mutation p.R523M 0.14 deleterious_low_confidence(0.04) benign(0.268) TCGA-IB-7651-01 11 64132779 64132779 G A RPS6KA4 Missense_Mutation p.D305N 0.16 tolerated(0.57) benign(0.008) TCGA-IB-7651-01 11 64137088 64137088 G A RPS6KA4 Silent p.P533P 0.20 TCGA-IB-7651-01 11 64137787 64137787 G A RPS6KA4 Missense_Mutation p.E630K 0.16 tolerated(0.49) benign(0.039) TCGA-IB-7651-01 11 64138899 64138899 G A RPS6KA4 Missense_Mutation p.V756I 0.22 tolerated_low_confidence(0.52) benign(0.002) TCGA-IB-7651-01 11 6422833 6422833 C T APBB1 Missense_Mutation p.A490T 0.14 deleterious(0) possibly_damaging(0.6) TCGA-IB-7651-01 11 6432329 6432329 G A APBB1 Silent p.A83A 0.04 TCGA-IB-7651-01 11 64359294 64359294 G A SLC22A12 Missense_Mutation p.R89H 0.16 tolerated(0.21) probably_damaging(0.912) TCGA-IB-7651-01 11 64374726 64374726 G A NRXN2 Missense_Mutation p.A1694V 0.16 deleterious(0.04) benign(0.094) TCGA-IB-7651-01 11 64410050 64410050 C T NRXN2 Intron 0.16 TCGA-IB-7651-01 11 644529 644529 C T DEAF1 3'UTR 0.10 TCGA-IB-7651-01 11 64504476 64504476 C T RASGRP2 Missense_Mutation p.A282T 0.24 deleterious(0.02) benign(0.012) TCGA-IB-7651-01 11 64518041 64518041 C A PYGM Missense_Mutation p.D662Y 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 64518890 64518890 C A PYGM Missense_Mutation p.A626S 0.18 tolerated(1) benign(0.179) TCGA-IB-7651-01 11 64536602 64536602 C T SF1 Splice_Site p.X385_splice 0.20 TCGA-IB-7651-01 11 64537827 64537827 C T SF1 Missense_Mutation p.R222Q 0.08 deleterious(0) probably_damaging(0.98) TCGA-IB-7651-01 11 64563851 64563851 G A MAP4K2 Missense_Mutation p.H549Y 0.19 tolerated(0.15) benign(0.02) TCGA-IB-7651-01 11 64568445 64568445 C T MAP4K2 Missense_Mutation p.V197I 0.17 tolerated(1) benign(0.001) TCGA-IB-7651-01 11 64572567 64572567 G A MEN1 Missense_Mutation p.P435L 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 64573758 64573758 C T MEN1 Missense_Mutation p.R337H 0.22 tolerated(0.13) possibly_damaging(0.484) TCGA-IB-7651-01 11 64599088 64599088 G A CDC42BPG Nonsense_Mutation p.Q1065* 0.20 TCGA-IB-7651-01 11 64602876 64602876 C A CDC42BPG Missense_Mutation p.E632D 0.18 tolerated(0.1) benign(0.015) TCGA-IB-7651-01 11 64606559 64606559 C T CDC42BPG Silent p.T274T 0.18 TCGA-IB-7651-01 11 64607741 64607741 C T CDC42BPG Splice_Site p.X145_splice 0.18 TCGA-IB-7651-01 11 64641903 64641903 C T EHD1 Silent p.R164R 0.22 TCGA-IB-7651-01 11 64662641 64662641 G A ATG2A Missense_Mutation p.S1874L 0.16 deleterious(0) benign(0.228) TCGA-IB-7651-01 11 64669563 64669563 G A ATG2A Silent p.V1330V 0.17 TCGA-IB-7651-01 11 64695588 64695588 C A PPP2R5B Silent p.P183P 0.16 TCGA-IB-7651-01 11 64698961 64698961 C T PPP2R5B Silent p.H315H 0.20 TCGA-IB-7651-01 11 6477406 6477406 C T TRIM3 Splice_Site p.X477_splice 0.16 TCGA-IB-7651-01 11 6477726 6477726 G A TRIM3 Silent p.R410R 0.24 TCGA-IB-7651-01 11 6479076 6479076 G A TRIM3 Missense_Mutation p.T122M 0.17 tolerated(0.09) possibly_damaging(0.577) TCGA-IB-7651-01 11 6479370 6479370 G A TRIM3 Silent p.A96A 0.16 TCGA-IB-7651-01 11 64803116 64803116 C T SNX15 Silent p.F215F 0.19 TCGA-IB-7651-01 11 64825602 64825602 G A NAALADL1 Silent p.Y102Y 0.23 TCGA-IB-7651-01 11 64847051 64847051 G A CDCA5 Missense_Mutation p.T151I 0.19 tolerated(0.12) benign(0.025) TCGA-IB-7651-01 11 64855532 64855532 C T ZFPL1 Silent p.S293S 0.16 TCGA-IB-7651-01 11 64875903 64875903 G A VPS51 Silent p.A320A 0.17 TCGA-IB-7651-01 11 64889267 64889267 C T FAU Missense_Mutation p.A7T 0.15 tolerated(0.24) benign(0.177) TCGA-IB-7651-01 11 64895881 64895881 C T SYVN1 Silent p.Q609Q 0.18 TCGA-IB-7651-01 11 64972252 64972252 G A CAPN1 Missense_Mutation p.A422T 0.21 deleterious(0) probably_damaging(0.957) TCGA-IB-7651-01 11 6500398 6500398 A G ARFIP2 Missense_Mutation p.V96A 0.15 deleterious(0.02) possibly_damaging(0.728) TCGA-IB-7651-01 11 65063055 65063055 T C POLA2 Missense_Mutation p.I502T 0.17 deleterious(0) possibly_damaging(0.673) TCGA-IB-7651-01 11 65088649 65088649 C T CDC42EP2 Missense_Mutation p.R94W 0.10 tolerated(0.17) benign(0.298) TCGA-IB-7651-01 11 65113213 65113213 C T DPF2 Silent p.G238G 0.19 TCGA-IB-7651-01 11 65113742 65113742 C T DPF2 Missense_Mutation p.T310I 0.18 deleterious(0) probably_damaging(0.959) TCGA-IB-7651-01 11 65113775 65113775 G A DPF2 Missense_Mutation p.R321H 0.20 deleterious(0.03) possibly_damaging(0.716) TCGA-IB-7651-01 11 65156957 65156957 G A FRMD8 Missense_Mutation p.A71T 0.24 deleterious(0) probably_damaging(0.909) TCGA-IB-7651-01 11 65172384 65172384 C T FRMD8 Missense_Mutation p.A374V 0.15 tolerated(0.15) benign(0.003) TCGA-IB-7651-01 11 6523988 6523988 A C DNHD1 Missense_Mutation p.Q251P 0.17 benign(0.093) TCGA-IB-7651-01 11 65268953 65268953 A G MALAT1 RNA 0.20 TCGA-IB-7651-01 11 65272161 65272161 C T MALAT1 RNA 0.20 TCGA-IB-7651-01 11 65300199 65300199 G T SCYL1 Missense_Mutation p.V385F 0.18 deleterious(0) possibly_damaging(0.866) TCGA-IB-7651-01 11 65302805 65302805 C T SCYL1 Silent p.C446C 0.12 TCGA-IB-7651-01 11 65304578 65304578 C T SCYL1 Silent p.D646D 0.13 TCGA-IB-7651-01 11 65308385 65308385 G T LTBP3 Silent p.T978T 0.15 TCGA-IB-7651-01 11 65392409 65392409 G A PCNXL3 Silent p.P947P 0.23 TCGA-IB-7651-01 11 65394998 65394998 G A PCNXL3 Missense_Mutation p.R1216H 0.19 tolerated(0.4) benign(0.008) TCGA-IB-7651-01 11 65408899 65408899 C T SIPA1 Silent p.L169L 0.10 TCGA-IB-7651-01 11 65408934 65408934 C T SIPA1 Missense_Mutation p.A181V 0.16 tolerated(0.79) benign(0) TCGA-IB-7651-01 11 65408968 65408968 G A SIPA1 Silent p.A192A 0.19 TCGA-IB-7651-01 11 6541262 6541262 T C DNHD1 Missense_Mutation p.V572A 0.17 benign(0.006) TCGA-IB-7651-01 11 6541427 6541427 G T DNHD1 Intron 0.24 TCGA-IB-7651-01 11 65416876 65416876 G T SIPA1 Missense_Mutation p.S817I 0.17 tolerated(0.32) benign(0.001) TCGA-IB-7651-01 11 65416912 65416912 C A SIPA1 Missense_Mutation p.T829N 0.19 deleterious(0.02) probably_damaging(0.982) TCGA-IB-7651-01 11 65423197 65423197 G T RELA Missense_Mutation p.A332D 0.16 deleterious(0.02) possibly_damaging(0.795) TCGA-IB-7651-01 11 65481297 65481297 C T KAT5 Missense_Mutation p.S223L 0.18 tolerated(0.38) benign(0.003) TCGA-IB-7651-01 11 65486480 65486480 T C RNASEH2C 3'UTR 0.23 TCGA-IB-7651-01 11 65486675 65486675 C T KAT5 3'UTR 0.20 TCGA-IB-7651-01 11 65562523 65562523 G A OVOL1 Missense_Mutation p.R172Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 11 65630597 65630597 A C MUS81 Missense_Mutation p.S223R 0.09 tolerated(0.12) benign(0.09) TCGA-IB-7651-01 11 65631319 65631319 C T MUS81 Nonsense_Mutation p.R336* 0.10 TCGA-IB-7651-01 11 65632028 65632028 G A MUS81 Missense_Mutation p.V374I 0.18 tolerated(0.84) benign(0.001) TCGA-IB-7651-01 11 65634326 65634326 C A EFEMP2 3'UTR 0.17 TCGA-IB-7651-01 11 65637409 65637409 G A EFEMP2 Missense_Mutation p.R216C 0.21 deleterious(0.03) probably_damaging(0.953) TCGA-IB-7651-01 11 65746568 65746568 C A SART1 3'UTR 0.28 TCGA-IB-7651-01 11 65770776 65770776 C A BANF1 Missense_Mutation p.P19T 0.21 tolerated(0.28) benign(0.082) TCGA-IB-7651-01 11 65784598 65784598 T G CATSPER1 Missense_Mutation p.E750A 0.09 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 11 65789270 65789270 G T CATSPER1 Missense_Mutation p.L504I 0.19 deleterious(0.02) possibly_damaging(0.718) TCGA-IB-7651-01 11 65790401 65790401 C T CATSPER1 Missense_Mutation p.E450K 0.07 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 11 65792817 65792817 C T CATSPER1 Missense_Mutation p.R345H 0.09 tolerated(0.64) benign(0.001) TCGA-IB-7651-01 11 65793057 65793057 C T CATSPER1 Missense_Mutation p.S265N 0.15 tolerated(0.32) benign(0.021) TCGA-IB-7651-01 11 65793392 65793392 T G CATSPER1 Missense_Mutation p.Q153H 0.19 tolerated(1) benign(0) TCGA-IB-7651-01 11 65793568 65793568 C T CATSPER1 Missense_Mutation p.G95S 0.18 tolerated(1) benign(0.039) TCGA-IB-7651-01 11 65811009 65811009 G A GAL3ST3 Missense_Mutation p.R89C 0.09 deleterious(0.03) benign(0.028) TCGA-IB-7651-01 11 65829183 65829183 G T SF3B2 Missense_Mutation p.K602N 0.05 deleterious(0.01) probably_damaging(0.981) TCGA-IB-7651-01 11 6587919 6587919 A G DNHD1 Missense_Mutation p.Y3770C 0.15 benign(0) TCGA-IB-7651-01 11 6588955 6588955 G A DNHD1 Silent p.T4072T 0.20 TCGA-IB-7651-01 11 6592149 6592149 G A DNHD1 Silent p.P4469P 0.19 TCGA-IB-7651-01 11 65988131 65988131 C T PACS1 Silent p.R356R 0.15 TCGA-IB-7651-01 11 66034455 66034455 C T KLC2 3'UTR 0.17 TCGA-IB-7651-01 11 66039549 66039549 G A RAB1B Intron 0.10 TCGA-IB-7651-01 11 66043577 66043577 C T RAB1B Silent p.V158V 0.17 TCGA-IB-7651-01 11 66043694 66043694 C T RAB1B Silent p.G197G 0.22 TCGA-IB-7651-01 11 66052203 66052203 C T YIF1A Missense_Mutation p.V263I 0.21 tolerated(0.4) benign(0.041) TCGA-IB-7651-01 11 66062461 66062461 C A TMEM151A Silent p.G248G 0.22 TCGA-IB-7651-01 11 66083499 66083499 C T CD248 Missense_Mutation p.E334K 0.21 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 11 66099666 66099666 G T RIN1 3'UTR 0.19 TCGA-IB-7651-01 11 66102411 66102411 G T RIN1 Missense_Mutation p.L287I 0.17 deleterious(0.03) probably_damaging(0.996) TCGA-IB-7651-01 11 66109606 66109606 G A BRMS1 Missense_Mutation p.R34W 0.09 deleterious(0.01) possibly_damaging(0.804) TCGA-IB-7651-01 11 66136654 66136654 G A SLC29A2 Missense_Mutation p.R98C 0.29 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 11 66192584 66192584 G A NPAS4 Silent p.S741S 0.20 TCGA-IB-7651-01 11 6621780 6621780 C T RRP8 Missense_Mutation p.R396H 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 6622562 6622562 C T RRP8 Missense_Mutation p.R245Q 0.12 tolerated(0.06) possibly_damaging(0.562) TCGA-IB-7651-01 11 66243552 66243552 T C PELI3 Missense_Mutation p.F442L 0.21 tolerated(0.08) probably_damaging(0.973) TCGA-IB-7651-01 11 66254796 66254796 G A DPP3 Missense_Mutation p.D186N 0.18 tolerated(0.26) benign(0.024) TCGA-IB-7651-01 11 66255388 66255388 C A DPP3 Missense_Mutation p.L193I 0.20 tolerated(1) benign(0.004) TCGA-IB-7651-01 11 66259196 66259196 C T DPP3 Silent p.R319R 0.19 TCGA-IB-7651-01 11 66294149 66294149 C T BBS1 Missense_Mutation p.R404C 0.08 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 66297358 66297358 G T BBS1 Missense_Mutation p.A470S 0.19 tolerated(0.19) benign(0.331) TCGA-IB-7651-01 11 66307147 66307147 G T ZDHHC24 Silent p.S236S 0.23 TCGA-IB-7651-01 11 6631921 6631921 C A ILK 3'UTR 0.30 TCGA-IB-7651-01 11 66327730 66327730 C T CTSF 3'Flank 0.18 TCGA-IB-7651-01 11 66329613 66329613 C T CTSF 3'Flank 0.20 TCGA-IB-7651-01 11 66359860 66359860 G T CCDC87 Silent p.I209I 0.09 TCGA-IB-7651-01 11 66366974 66366974 G A CCS Missense_Mutation p.V99M 0.17 deleterious(0) probably_damaging(0.95) TCGA-IB-7651-01 11 6637257 6637257 C T TPP1 Missense_Mutation p.R375H 0.15 deleterious(0.02) probably_damaging(0.987) TCGA-IB-7651-01 11 6637890 6637890 A G TPP1 Splice_Site p.X296_splice 0.17 TCGA-IB-7651-01 11 6643477 6643477 C T DCHS1 Missense_Mutation p.A3144T 0.17 tolerated(0.12) benign(0.346) TCGA-IB-7651-01 11 66436255 66436255 C T RBM4B Missense_Mutation p.R307H 0.14 deleterious(0.03) benign(0.01) TCGA-IB-7651-01 11 6643989 6643989 C T DCHS1 Missense_Mutation p.G2973D 0.12 tolerated(0.34) benign(0.027) TCGA-IB-7651-01 11 6644403 6644403 A G DCHS1 Missense_Mutation p.V2835A 0.14 deleterious(0) probably_damaging(0.935) TCGA-IB-7651-01 11 66444613 66444613 C T RBM4B 5'UTR 0.22 TCGA-IB-7651-01 11 66453327 66453327 G T SPTBN2 3'UTR 0.15 TCGA-IB-7651-01 11 6645358 6645358 C T DCHS1 Missense_Mutation p.A2517T 0.20 tolerated(0.55) benign(0.008) TCGA-IB-7651-01 11 66455061 66455061 G A SPTBN2 Missense_Mutation p.R2187W 0.19 deleterious(0.01) benign(0.226) TCGA-IB-7651-01 11 66456195 66456195 G A SPTBN2 Missense_Mutation p.R2054W 0.20 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 11 66460174 66460174 G A SPTBN2 Silent p.L1675L 0.18 TCGA-IB-7651-01 11 66468126 66468126 C A SPTBN2 Missense_Mutation p.E1148D 0.17 tolerated(0.22) benign(0.339) TCGA-IB-7651-01 11 66472170 66472170 G A SPTBN2 Silent p.S859S 0.14 TCGA-IB-7651-01 11 6647793 6647793 C T DCHS1 Silent p.Q2118Q 0.07 TCGA-IB-7651-01 11 66481107 66481107 G A SPTBN2 Missense_Mutation p.P256L 0.20 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 11 6651110 6651110 C T DCHS1 Missense_Mutation p.E1610K 0.20 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 11 6652301 6652301 G T DCHS1 Missense_Mutation p.L1305I 0.09 tolerated(0.37) benign(0.016) TCGA-IB-7651-01 11 66611062 66611062 G A RCE1 Missense_Mutation p.A46T 0.18 tolerated(0.06) probably_damaging(0.996) TCGA-IB-7651-01 11 6661247 6661247 G A DCHS1 Missense_Mutation p.A533V 0.23 deleterious(0.04) possibly_damaging(0.61) TCGA-IB-7651-01 11 66619997 66619997 T C PC Missense_Mutation p.T580A 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 6662109 6662109 G T DCHS1 Missense_Mutation p.L246M 0.06 tolerated(0.26) possibly_damaging(0.873) TCGA-IB-7651-01 11 66816068 66816068 G A SYT12 Missense_Mutation p.R369H 0.18 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 11 66834227 66834227 G A RHOD Missense_Mutation p.R80H 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 11 66975059 66975059 A G KDM2A Missense_Mutation p.Y129C 0.07 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 11 67012741 67012741 T C KDM2A Silent p.L549L 0.13 TCGA-IB-7651-01 11 67018039 67018039 G A KDM2A Silent p.Q846Q 0.18 TCGA-IB-7651-01 11 67049920 67049920 A G ADRBK1 Missense_Mutation p.Y356C 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 67049925 67049925 G A ADRBK1 Missense_Mutation p.A358T 0.16 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 11 67050268 67050268 C T ADRBK1 Silent p.I402I 0.18 TCGA-IB-7651-01 11 67068443 67068443 C A ANKRD13D Intron 0.20 TCGA-IB-7651-01 11 67163803 67163803 C T RAD9A Silent p.T268T 0.18 TCGA-IB-7651-01 11 67166104 67166104 C T PPP1CA Missense_Mutation p.A310T 0.18 tolerated_low_confidence(0.11) benign(0.005) TCGA-IB-7651-01 11 67196455 67196455 C T RPS6KB2 Silent p.D27D 0.14 TCGA-IB-7651-01 11 67200475 67200475 C T RPS6KB2 Silent p.G223G 0.13 TCGA-IB-7651-01 11 67205955 67205955 C A CORO1B Missense_Mutation p.E454D 0.16 tolerated(0.34) benign(0.001) TCGA-IB-7651-01 11 67206391 67206391 G A CORO1B Silent p.P365P 0.18 TCGA-IB-7651-01 11 67209083 67209083 G A CORO1B Intron 0.16 TCGA-IB-7651-01 11 67219490 67219490 C T GPR152 Missense_Mutation p.A236T 0.09 tolerated(0.05) probably_damaging(0.967) TCGA-IB-7651-01 11 67260478 67260478 G A PITPNM1 Missense_Mutation p.A1133V 0.14 deleterious(0) possibly_damaging(0.479) TCGA-IB-7651-01 11 67352153 67352153 C T GSTP1 Intron 0.15 TCGA-IB-7651-01 11 67354023 67354023 C T GSTP1 Missense_Mutation p.P203L 0.20 deleterious(0) possibly_damaging(0.812) TCGA-IB-7651-01 11 67376922 67376922 G T NDUFV1 Splice_Site p.X109_splice 0.16 TCGA-IB-7651-01 11 67397232 67397232 G T NUDT8 Missense_Mutation p.L51M 0.21 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 11 67401799 67401799 G A TBX10 Missense_Mutation p.A137V 0.17 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 11 67410175 67410175 T G ACY3 3'UTR 0.19 TCGA-IB-7651-01 11 67433656 67433656 G T ALDH3B2 Missense_Mutation p.L86M 0.16 tolerated(0.21) possibly_damaging(0.824) TCGA-IB-7651-01 11 67564237 67564237 C A FAM86C2P RNA 0.14 TCGA-IB-7651-01 11 67789274 67789274 C T ALDH3B1 Missense_Mutation p.R294W 0.17 tolerated(0.08) possibly_damaging(0.828) TCGA-IB-7651-01 11 67790162 67790162 A C ALDH3B1 Missense_Mutation p.E348A 0.18 deleterious(0.03) benign(0.073) TCGA-IB-7651-01 11 67804104 67804104 C T NDUFS8 3'UTR 0.19 TCGA-IB-7651-01 11 67816688 67816688 G T TCIRG1 Missense_Mutation p.S605I 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 67925463 67925463 C A SUV420H1 Missense_Mutation p.D784Y 0.04 deleterious(0) probably_damaging(0.928) TCGA-IB-7651-01 11 67925796 67925796 C T SUV420H1 Missense_Mutation p.V673I 0.14 tolerated(0.42) benign(0.002) TCGA-IB-7651-01 11 67933312 67933312 C T SUV420H1 Intron 0.21 TCGA-IB-7651-01 11 67939172 67939172 G A SUV420H1 Nonsense_Mutation p.R220* 0.12 TCGA-IB-7651-01 11 6815939 6815939 G A OR6A2 3'UTR 0.16 TCGA-IB-7651-01 11 6816484 6816484 G A OR6A2 Silent p.G152G 0.06 TCGA-IB-7651-01 11 6816737 6816737 G A OR6A2 Missense_Mutation p.S68F 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 11 6816882 6816882 C T OR6A2 Missense_Mutation p.A20T 0.17 tolerated(1) possibly_damaging(0.722) TCGA-IB-7651-01 11 68171011 68171011 T C LRP5 Missense_Mutation p.F549L 0.16 deleterious(0.01) possibly_damaging(0.819) TCGA-IB-7651-01 11 68181324 68181324 G A LRP5 Missense_Mutation p.D891N 0.18 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 11 68191127 68191127 C T LRP5 Silent p.R1066R 0.20 TCGA-IB-7651-01 11 68206126 68206126 G A LRP5 Missense_Mutation p.G1442S 0.20 tolerated(0.99) benign(0.002) TCGA-IB-7651-01 11 68517673 68517673 G A MTL5 Silent p.G152G 0.19 TCGA-IB-7651-01 11 68517909 68517909 C T MTL5 Missense_Mutation p.D74N 0.19 deleterious_low_confidence(0.05) benign(0.051) TCGA-IB-7651-01 11 68527694 68527694 G A CPT1A Missense_Mutation p.P714L 0.20 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 11 68664142 68664142 G A MRPL21 Silent p.V79V 0.17 TCGA-IB-7651-01 11 6867249 6867249 A G OR10A5 Silent p.E112E 0.20 TCGA-IB-7651-01 11 68703961 68703961 G A IGHMBP2 Silent p.T671T 0.25 TCGA-IB-7651-01 11 68707097 68707097 C A IGHMBP2 Silent p.S960S 0.18 TCGA-IB-7651-01 11 68747857 68747857 G A MRGPRD Missense_Mutation p.T200I 0.16 tolerated(0.97) benign(0.065) TCGA-IB-7651-01 11 688045 688045 G T DEAF1 Missense_Mutation p.P177H 0.08 deleterious(0) probably_damaging(0.935) TCGA-IB-7651-01 11 68821505 68821505 C T TPCN2 Silent p.A38A 0.15 TCGA-IB-7651-01 11 68830434 68830434 G A TPCN2 Missense_Mutation p.R210H 0.19 deleterious(0.02) probably_damaging(0.91) TCGA-IB-7651-01 11 6913006 6913006 G A OR2D2 Silent p.G242G 0.22 TCGA-IB-7651-01 11 6913214 6913214 C T OR2D2 Missense_Mutation p.S173N 0.21 tolerated(0.37) benign(0.008) TCGA-IB-7651-01 11 70170552 70170552 G A PPFIA1 Silent p.Q103Q 0.04 TCGA-IB-7651-01 11 70224133 70224133 C T PPFIA1 Intron 0.12 TCGA-IB-7651-01 11 70224261 70224261 G A PPFIA1 Missense_Mutation p.M1170I 0.17 tolerated(0.3) benign(0.001) TCGA-IB-7651-01 11 70319395 70319395 G A SHANK2 Missense_Mutation p.P1711L 0.18 deleterious(0.01) possibly_damaging(0.713) TCGA-IB-7651-01 11 70319396 70319396 G T SHANK2 Missense_Mutation p.P1711T 0.18 deleterious(0) possibly_damaging(0.641) TCGA-IB-7651-01 11 70332710 70332710 A C SHANK2 Missense_Mutation p.S1231A 0.13 tolerated(0.28) benign(0.001) TCGA-IB-7651-01 11 70333167 70333167 G T SHANK2 Silent p.P1078P 0.19 TCGA-IB-7651-01 11 7063707 7063707 C T NLRP14 Silent p.F150F 0.20 TCGA-IB-7651-01 11 7079535 7079535 G T NLRP14 Missense_Mutation p.E829D 0.19 tolerated(0.59) benign(0.263) TCGA-IB-7651-01 11 7110341 7110341 G A RBMXL2 5'UTR 0.10 TCGA-IB-7651-01 11 7111361 7111361 C T RBMXL2 Missense_Mutation p.S337L 0.14 tolerated(0.25) benign(0) TCGA-IB-7651-01 11 7111476 7111476 C T RBMXL2 Silent p.G375G 0.18 TCGA-IB-7651-01 11 71146496 71146496 G A DHCR7 Silent p.C451C 0.04 TCGA-IB-7651-01 11 71148891 71148891 G T DHCR7 Missense_Mutation p.D310E 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 11 71152458 71152458 G A DHCR7 Silent p.G147G 0.14 TCGA-IB-7651-01 11 71183494 71183494 G T NADSYN1 Splice_Site p.X136_splice 0.15 TCGA-IB-7651-01 11 71183521 71183521 G A NADSYN1 Missense_Mutation p.R145Q 0.15 tolerated(0.17) possibly_damaging(0.611) TCGA-IB-7651-01 11 71184618 71184618 G A NADSYN1 Silent p.P184P 0.22 TCGA-IB-7651-01 11 71208551 71208551 C T NADSYN1 Missense_Mutation p.A596V 0.11 deleterious(0.04) benign(0.087) TCGA-IB-7651-01 11 71249100 71249100 C T KRTAP5-8 5'UTR 0.09 TCGA-IB-7651-01 11 71259531 71259531 G T KRTAP5-9 5'UTR 0.21 TCGA-IB-7651-01 11 71260330 71260330 T G KRTAP5-9 3'UTR 0.18 TCGA-IB-7651-01 11 71510783 71510783 A G FAM86C1 3'UTR 0.21 TCGA-IB-7651-01 11 71720154 71720154 C A NUMA1 Missense_Mutation p.E1639D 0.16 probably_damaging(0.997) TCGA-IB-7651-01 11 71726974 71726974 C T NUMA1 Silent p.K525K 0.21 TCGA-IB-7651-01 11 71735344 71735344 C T NUMA1 Missense_Mutation p.D62N 0.20 benign(0.003) TCGA-IB-7651-01 11 71820891 71820891 C T ANAPC15 3'UTR 0.15 TCGA-IB-7651-01 11 71850696 71850696 G A FOLR3 Missense_Mutation p.A229T 0.19 tolerated(0.57) possibly_damaging(0.49) TCGA-IB-7651-01 11 71850826 71850826 C T FOLR3 Missense_Mutation p.A272V 0.15 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 11 71906964 71906964 G A FOLR1 Missense_Mutation p.A173T 0.16 tolerated(0.27) benign(0.074) TCGA-IB-7651-01 11 71941873 71941873 A G INPPL1 Missense_Mutation p.M411V 0.19 deleterious(0) possibly_damaging(0.633) TCGA-IB-7651-01 11 71948167 71948167 G T INPPL1 Splice_Site p.X960_splice 0.19 TCGA-IB-7651-01 11 72004396 72004396 G A CLPB 3'UTR 0.10 TCGA-IB-7651-01 11 721660 721660 G A EPS8L2 Silent p.K288K 0.15 TCGA-IB-7651-01 11 722509 722509 T C EPS8L2 Missense_Mutation p.S390P 0.16 tolerated(0.2) benign(0.16) TCGA-IB-7651-01 11 72288386 72288386 C A PDE2A 3'UTR 0.19 TCGA-IB-7651-01 11 72299898 72299898 G A PDE2A Missense_Mutation p.P334S 0.21 deleterious(0.02) probably_damaging(0.985) TCGA-IB-7651-01 11 72423582 72423582 G A ARAP1 Missense_Mutation p.A260V 0.18 tolerated(0.08) benign(0.437) TCGA-IB-7651-01 11 72554472 72554472 C T FCHSD2 Intron 0.16 TCGA-IB-7651-01 11 72578921 72578921 T C FCHSD2 Missense_Mutation p.T433A 0.15 tolerated(0.65) benign(0.001) TCGA-IB-7651-01 11 725803 725803 C A EPS8L2 Missense_Mutation p.L546I 0.19 deleterious(0.01) probably_damaging(0.954) TCGA-IB-7651-01 11 72945946 72945946 G A P2RY2 Missense_Mutation p.A248T 0.21 tolerated(0.2) benign(0.065) TCGA-IB-7651-01 11 72945948 72945948 C T P2RY2 Silent p.A248A 0.20 TCGA-IB-7651-01 11 73020891 73020891 A T ARHGEF17 Missense_Mutation p.D403V 0.18 deleterious_low_confidence(0) benign(0.307) TCGA-IB-7651-01 11 73074371 73074371 G A ARHGEF17 Missense_Mutation p.S1706N 0.19 deleterious(0) benign(0.242) TCGA-IB-7651-01 11 73372564 73372564 G A PLEKHB1 Missense_Mutation p.A217T 0.18 tolerated(0.31) possibly_damaging(0.856) TCGA-IB-7651-01 11 73555945 73555945 G A MRPL48 Missense_Mutation p.D99N 0.21 tolerated(0.08) possibly_damaging(0.558) TCGA-IB-7651-01 11 73571043 73571043 C T MRPL48 Nonsense_Mutation p.R155* 0.18 TCGA-IB-7651-01 11 73575366 73575366 G A MRPL48 Missense_Mutation p.R197Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 11 73630036 73630036 T C PAAF1 Missense_Mutation p.L326P 0.22 deleterious(0) possibly_damaging(0.521) TCGA-IB-7651-01 11 73712499 73712499 C T UCP3 Silent p.R299R 0.16 TCGA-IB-7651-01 11 73714790 73714790 G T UCP3 Intron 0.19 TCGA-IB-7651-01 11 73714966 73714966 G A UCP3 Missense_Mutation p.R244W 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 73718174 73718174 G A UCP3 5'UTR 0.20 TCGA-IB-7651-01 11 73768505 73768505 G T C2CD3 Missense_Mutation p.T1679N 0.16 deleterious(0) probably_damaging(0.945) TCGA-IB-7651-01 11 73789414 73789414 G T C2CD3 Missense_Mutation p.P1450H 0.04 tolerated(0.5) probably_damaging(0.981) TCGA-IB-7651-01 11 73803472 73803472 T C C2CD3 Missense_Mutation p.N1169S 0.22 tolerated(0.98) benign(0.012) TCGA-IB-7651-01 11 73809190 73809190 C T C2CD3 Missense_Mutation p.R948Q 0.15 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 11 73814473 73814473 C A C2CD3 Missense_Mutation p.Q761H 0.17 tolerated(0.09) benign(0.047) TCGA-IB-7651-01 11 73850003 73850003 G T C2CD3 Missense_Mutation p.D239E 0.17 deleterious(0.03) probably_damaging(0.987) TCGA-IB-7651-01 11 73980723 73980723 C T P4HA3 Missense_Mutation p.A481T 0.11 tolerated(0.18) benign(0.084) TCGA-IB-7651-01 11 74049647 74049647 C A PGM2L1 Splice_Site p.X545_splice 0.15 TCGA-IB-7651-01 11 74054391 74054391 A G PGM2L1 Missense_Mutation p.L430P 0.19 deleterious(0.01) probably_damaging(0.915) TCGA-IB-7651-01 11 74417568 74417568 C T CHRDL2 Silent p.S182S 0.15 TCGA-IB-7651-01 11 7441783 7441783 G A SYT9 Missense_Mutation p.A462T 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-IB-7651-01 11 74424519 74424519 G T CHRDL2 Silent p.A67A 0.19 TCGA-IB-7651-01 11 74545772 74545772 G T RNF169 Missense_Mutation p.Q298H 0.07 deleterious(0.03) possibly_damaging(0.838) TCGA-IB-7651-01 11 74570255 74570255 G A XRRA1 Missense_Mutation p.T365M 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-IB-7651-01 11 74617337 74617337 T A XRRA1 Missense_Mutation p.D309V 0.17 deleterious(0.01) possibly_damaging(0.739) TCGA-IB-7651-01 11 7488167 7488167 C T SYT9 3'UTR 0.20 TCGA-IB-7651-01 11 74914295 74914295 G T SLCO2B1 Intron 0.19 TCGA-IB-7651-01 11 74914312 74914312 C T SLCO2B1 Intron 0.09 TCGA-IB-7651-01 11 74914430 74914430 G A SLCO2B1 Missense_Mutation p.R636Q 0.17 tolerated(0.27) benign(0.057) TCGA-IB-7651-01 11 74994458 74994458 C T ARRB1 Missense_Mutation p.R76H 0.17 deleterious(0.02) probably_damaging(0.989) TCGA-IB-7651-01 11 75153439 75153439 G T GDPD5 Missense_Mutation p.A379D 0.22 deleterious(0.02) possibly_damaging(0.453) TCGA-IB-7651-01 11 75153542 75153542 G T GDPD5 Missense_Mutation p.L345I 0.15 deleterious(0.04) possibly_damaging(0.868) TCGA-IB-7651-01 11 75316859 75316859 G A MAP6 Missense_Mutation p.A437V 0.18 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 11 75442258 75442258 A T MOGAT2 Missense_Mutation p.E311V 0.19 deleterious(0.01) probably_damaging(0.925) TCGA-IB-7651-01 11 75599929 75599929 T C UVRAG Silent p.G163G 0.20 TCGA-IB-7651-01 11 75718637 75718637 A G UVRAG Missense_Mutation p.E324G 0.14 deleterious(0) probably_damaging(0.98) TCGA-IB-7651-01 11 75851896 75851896 A G UVRAG Silent p.R513R 0.08 TCGA-IB-7651-01 11 75907625 75907625 C T WNT11 Missense_Mutation p.R74H 0.19 tolerated(0.12) probably_damaging(0.91) TCGA-IB-7651-01 11 76063034 76063034 A C PRKRIR Missense_Mutation p.V387G 0.20 deleterious(0) possibly_damaging(0.695) TCGA-IB-7651-01 11 76169327 76169327 G A C11orf30 Missense_Mutation p.A116T 0.17 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-IB-7651-01 11 76257202 76257202 C T C11orf30 Missense_Mutation p.S1212L 0.20 tolerated_low_confidence(0.14) benign(0.131) TCGA-IB-7651-01 11 7654163 7654163 C T PPFIBP2 Silent p.T378T 0.16 TCGA-IB-7651-01 11 7672936 7672936 T C PPFIBP2 Missense_Mutation p.I766T 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 76751323 76751323 G A B3GNT6 Missense_Mutation p.R243H 0.23 tolerated(0.21) benign(0.011) TCGA-IB-7651-01 11 76796041 76796041 G A CAPN5 Missense_Mutation p.D37N 0.19 tolerated(0.12) possibly_damaging(0.819) TCGA-IB-7651-01 11 76814037 76814037 C A OMP Missense_Mutation p.S51Y 0.23 tolerated_low_confidence(1) benign(0.013) TCGA-IB-7651-01 11 76825452 76825452 G A CAPN5 Missense_Mutation p.R224Q 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-IB-7651-01 11 76869383 76869383 G A MYO7A Missense_Mutation p.A304T 0.23 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 11 76870504 76870504 G A MYO7A Missense_Mutation p.E339K 0.11 tolerated(0.15) benign(0.045) TCGA-IB-7651-01 11 76912528 76912528 G A MYO7A Missense_Mutation p.G1630R 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 76969510 76969510 G A GDPD4 Missense_Mutation p.S262F 0.08 tolerated(0.69) benign(0.003) TCGA-IB-7651-01 11 7721940 7721940 G T OVCH2 Silent p.G268G 0.12 TCGA-IB-7651-01 11 77639550 77639550 C A INTS4 Missense_Mutation p.Q403H 0.19 tolerated(0.54) benign(0.421) TCGA-IB-7651-01 11 77885614 77885614 G A KCTD21 5'UTR 0.18 TCGA-IB-7651-01 11 77920696 77920696 G A USP35 Missense_Mutation p.A599T 0.04 deleterious(0) unknown(0) TCGA-IB-7651-01 11 77921647 77921647 G T USP35 Missense_Mutation p.D916Y 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 77924851 77924851 G A USP35 Missense_Mutation p.V1017I 0.18 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-IB-7651-01 11 77931441 77931441 G A GAB2 Missense_Mutation p.A604V 0.18 tolerated(0.84) probably_damaging(0.987) TCGA-IB-7651-01 11 77937523 77937523 G A GAB2 Nonsense_Mutation p.R399* 0.13 TCGA-IB-7651-01 11 7818353 7818353 C A OR5P2 Missense_Mutation p.R46I 0.22 deleterious(0.01) benign(0.077) TCGA-IB-7651-01 11 78277273 78277273 G A NARS2 Nonsense_Mutation p.R140* 0.20 TCGA-IB-7651-01 11 78368960 78368960 G A TENM4 3'UTR 0.16 TCGA-IB-7651-01 11 78369427 78369427 G A TENM4 Silent p.R2662R 0.17 TCGA-IB-7651-01 11 78369860 78369860 G T TENM4 Missense_Mutation p.S2518Y 0.17 deleterious(0.03) benign(0.281) TCGA-IB-7651-01 11 78372542 78372542 G A TENM4 Silent p.Y2501Y 0.13 TCGA-IB-7651-01 11 78372605 78372605 G A TENM4 Silent p.F2480F 0.12 TCGA-IB-7651-01 11 78419498 78419498 C T TENM4 Missense_Mutation p.D1373N 0.15 tolerated(0.24) benign(0.315) TCGA-IB-7651-01 11 78440485 78440485 A C TENM4 Nonsense_Mutation p.Y1114* 0.14 TCGA-IB-7651-01 11 7846775 7846775 T G OR5P3 Missense_Mutation p.T249P 0.16 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 11 788638 788638 G A CEND1 5'UTR 0.22 TCGA-IB-7651-01 11 792041 792041 C T SLC25A22 Silent p.S282S 0.17 TCGA-IB-7651-01 11 7950054 7950054 G A OR10A6 Silent p.D52D 0.18 TCGA-IB-7651-01 11 7981307 7981308 - T NLRP10 Frame_Shift_Ins p.C618Mfs*13 0.23 TCGA-IB-7651-01 11 7982118 7982118 G A NLRP10 Silent p.L347L 0.06 TCGA-IB-7651-01 11 804251 804251 G T PIDD Silent p.G46G 0.25 TCGA-IB-7651-01 11 8060332 8060332 C T TUB 5'UTR 0.16 TCGA-IB-7651-01 11 811728 811728 G A RPLP2 Intron 0.19 TCGA-IB-7651-01 11 8118259 8118259 A C TUB Missense_Mutation p.E253A 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-IB-7651-01 11 82444633 82444633 C T FAM181B Missense_Mutation p.A47T 0.20 tolerated(0.23) possibly_damaging(0.908) TCGA-IB-7651-01 11 8248572 8248572 C T LMO1 Silent p.R105R 0.15 TCGA-IB-7651-01 11 82561517 82561517 C A PRCP Nonsense_Mutation p.E169* 0.18 TCGA-IB-7651-01 11 82639965 82639965 C T C11orf82 Missense_Mutation p.A87V 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 82880369 82880369 C T PCF11 Missense_Mutation p.P998S 0.19 deleterious(0.04) possibly_damaging(0.761) TCGA-IB-7651-01 11 82976975 82976975 T C CCDC90B Missense_Mutation p.D214G 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 83641454 83641455 - T DLG2 Frame_Shift_Ins p.V472Cfs*2 0.15 TCGA-IB-7651-01 11 837331 837331 G A CD151 Missense_Mutation p.A145T 0.20 deleterious(0.04) possibly_damaging(0.826) TCGA-IB-7651-01 11 8414051 8414051 G A STK33 3'UTR 0.18 TCGA-IB-7651-01 11 8414220 8414220 T G STK33 Missense_Mutation p.K461T 0.23 tolerated_low_confidence(0.4) benign(0.053) TCGA-IB-7651-01 11 84245751 84245751 G A DLG2 Silent p.D127D 0.18 TCGA-IB-7651-01 11 84634141 84634141 C T DLG2 Intron 0.16 TCGA-IB-7651-01 11 85375468 85375468 G A CREBZF Missense_Mutation p.A151V 0.23 tolerated_low_confidence(0.07) benign(0.03) TCGA-IB-7651-01 11 85425558 85425558 G A SYTL2 Intron 0.06 TCGA-IB-7651-01 11 85435654 85435654 G A SYTL2 Missense_Mutation p.P616S 0.17 tolerated(0.81) benign(0) TCGA-IB-7651-01 11 85733411 85733411 C A PICALM Missense_Mutation p.G151W 0.21 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 11 85967452 85967452 T C EED Silent p.C150C 0.22 TCGA-IB-7651-01 11 85988142 85988142 A G EED Missense_Mutation p.I363V 0.19 deleterious(0.02) benign(0.283) TCGA-IB-7651-01 11 85989623 85989623 T G EED 3'UTR 0.17 TCGA-IB-7651-01 11 862729 862729 C A TSPAN4 Nonsense_Mutation p.C81* 0.18 TCGA-IB-7651-01 11 86518792 86518792 G A PRSS23 Missense_Mutation p.R36H 0.12 tolerated(0.09) benign(0.007) TCGA-IB-7651-01 11 86519307 86519307 G A PRSS23 Missense_Mutation p.D208N 0.19 tolerated(0.58) benign(0.001) TCGA-IB-7651-01 11 87013442 87013442 G A TMEM135 Missense_Mutation p.R219K 0.21 tolerated(0.42) benign(0.001) TCGA-IB-7651-01 11 8707399 8707399 G A RPL27A 3'UTR 0.14 TCGA-IB-7651-01 11 8717975 8717975 C A ST5 Missense_Mutation p.K1097N 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 11 8734225 8734225 C T ST5 Missense_Mutation p.R682H 0.13 tolerated(0.12) benign(0.054) TCGA-IB-7651-01 11 8737215 8737215 T C ST5 Missense_Mutation p.N594D 0.19 tolerated(0.1) benign(0.064) TCGA-IB-7651-01 11 8747727 8747727 C T ST5 Missense_Mutation p.S457N 0.20 tolerated(0.24) possibly_damaging(0.488) TCGA-IB-7651-01 11 87908434 87908434 G A RAB38 Missense_Mutation p.A40V 0.14 deleterious(0.01) probably_damaging(0.979) TCGA-IB-7651-01 11 87908579 87908579 C T RAB38 5'UTR 0.16 TCGA-IB-7651-01 11 88242512 88242512 C T GRM5 Missense_Mutation p.A963T 0.19 tolerated_low_confidence(0.39) benign(0.002) TCGA-IB-7651-01 11 88300355 88300355 G A GRM5 Silent p.N832N 0.20 TCGA-IB-7651-01 11 88300442 88300442 A C GRM5 Missense_Mutation p.C803W 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 11 88386453 88386453 G A GRM5 Missense_Mutation p.L344F 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 88780583 88780583 G T GRM5 Missense_Mutation p.S153Y 0.09 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 88924508 88924508 T G TYR Missense_Mutation p.F320V 0.05 tolerated(0.29) benign(0.446) TCGA-IB-7651-01 11 88924572 88924572 G T TYR Missense_Mutation p.R341I 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 89017970 89017970 G A TYR Missense_Mutation p.R405H 0.18 tolerated(0.14) benign(0.003) TCGA-IB-7651-01 11 89028501 89028501 G A TYR Silent p.E519E 0.12 TCGA-IB-7651-01 11 89133228 89133228 G A NOX4 Missense_Mutation p.P344L 0.17 deleterious(0) probably_damaging(0.978) TCGA-IB-7651-01 11 89385740 89385740 C A FOLH1B RNA 0.17 TCGA-IB-7651-01 11 89424667 89424667 C T FOLH1B RNA 0.13 TCGA-IB-7651-01 11 8950933 8950933 G T C11orf16 Silent p.A105A 0.10 TCGA-IB-7651-01 11 89531369 89531369 G T TRIM49 Missense_Mutation p.L430I 0.11 deleterious(0.02) possibly_damaging(0.861) TCGA-IB-7651-01 11 89537253 89537253 T C TRIM49 Missense_Mutation p.I129V 0.10 tolerated(0.36) benign(0.052) TCGA-IB-7651-01 11 89537566 89537566 G A TRIM49 Silent p.D24D 0.13 TCGA-IB-7651-01 11 89774511 89774511 G T TRIM49C Missense_Mutation p.K384N 0.16 deleterious(0) possibly_damaging(0.887) TCGA-IB-7651-01 11 89868815 89868815 T C NAALAD2 Silent p.A57A 0.17 TCGA-IB-7651-01 11 89882186 89882186 T G NAALAD2 Missense_Mutation p.S132A 0.21 tolerated(0.32) benign(0.05) TCGA-IB-7651-01 11 89903276 89903276 A G NAALAD2 Missense_Mutation p.Y461C 0.17 deleterious(0.02) probably_damaging(0.948) TCGA-IB-7651-01 11 9164309 9164309 C T DENND5A Silent p.S1157S 0.18 TCGA-IB-7651-01 11 9166622 9166622 G T DENND5A Silent p.G1014G 0.15 TCGA-IB-7651-01 11 9172287 9172287 C A DENND5A Missense_Mutation p.R849M 0.16 deleterious(0) probably_damaging(0.967) TCGA-IB-7651-01 11 9200460 9200460 C A DENND5A Missense_Mutation p.S539I 0.19 deleterious(0.04) possibly_damaging(0.477) TCGA-IB-7651-01 11 92085814 92085814 A G FAT3 Missense_Mutation p.Q179R 0.19 benign(0.267) TCGA-IB-7651-01 11 92258078 92258078 A G FAT3 Missense_Mutation p.N1191D 0.18 probably_damaging(0.997) TCGA-IB-7651-01 11 92533803 92533803 G A FAT3 Missense_Mutation p.D2542N 0.21 benign(0.057) TCGA-IB-7651-01 11 92534276 92534276 G A FAT3 Silent p.L2699L 0.15 TCGA-IB-7651-01 11 92534289 92534289 T G FAT3 Missense_Mutation p.F2704V 0.16 benign(0.001) TCGA-IB-7651-01 11 92577129 92577129 T G FAT3 Silent p.V3532V 0.18 TCGA-IB-7651-01 11 92624341 92624341 C A FAT3 3'UTR 0.27 TCGA-IB-7651-01 11 92702921 92702921 C T MTNR1B Silent p.C10C 0.21 TCGA-IB-7651-01 11 92901261 92901261 C T SLC36A4 Missense_Mutation p.S206N 0.16 tolerated(0.16) benign(0.008) TCGA-IB-7651-01 11 92917667 92917667 G A SLC36A4 Missense_Mutation p.H67Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 11 9335893 9335893 C T TMEM41B Silent p.A32A 0.09 TCGA-IB-7651-01 11 93465654 93465654 C T KIAA1731 3'Flank 0.18 TCGA-IB-7651-01 11 93471348 93471348 C A TAF1D Missense_Mutation p.R129I 0.17 deleterious(0) possibly_damaging(0.67) TCGA-IB-7651-01 11 93487188 93487188 C T C11orf54 Silent p.L105L 0.17 TCGA-IB-7651-01 11 93526947 93526947 G A MED17 Missense_Mutation p.D231N 0.19 tolerated(0.13) probably_damaging(0.98) TCGA-IB-7651-01 11 93529577 93529577 C T MED17 Silent p.S338S 0.15 TCGA-IB-7651-01 11 93808358 93808358 C T HEPHL1 Missense_Mutation p.A508V 0.18 tolerated(0.25) possibly_damaging(0.802) TCGA-IB-7651-01 11 93815642 93815642 G A HEPHL1 Missense_Mutation p.R592K 0.18 deleterious(0.01) benign(0.001) TCGA-IB-7651-01 11 93826709 93826709 C T HEPHL1 Silent p.G779G 0.15 TCGA-IB-7651-01 11 93914052 93914052 G T PANX1 3'UTR 0.15 TCGA-IB-7651-01 11 94192582 94192582 C T MRE11A Missense_Mutation p.D498N 0.16 tolerated(0.09) benign(0.046) TCGA-IB-7651-01 11 94231498 94231498 C T ANKRD49 Missense_Mutation p.L174F 0.18 tolerated(0.74) benign(0.002) TCGA-IB-7651-01 11 94231778 94231778 T C ANKRD49 3'UTR 0.24 TCGA-IB-7651-01 11 94278557 94278557 G T FUT4 Missense_Mutation p.D420Y 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 94310447 94310447 C A PIWIL4 Missense_Mutation p.S101Y 0.13 deleterious(0.01) possibly_damaging(0.548) TCGA-IB-7651-01 11 94533141 94533141 G T AMOTL1 Missense_Mutation p.S262I 0.18 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 11 94554837 94554837 G A AMOTL1 Silent p.P421P 0.19 TCGA-IB-7651-01 11 94602523 94602523 C T AMOTL1 Silent p.A883A 0.11 TCGA-IB-7651-01 11 94731619 94731619 G A KDM4D Silent p.Q361Q 0.16 TCGA-IB-7651-01 11 94731922 94731922 T G KDM4D Silent p.A462A 0.21 TCGA-IB-7651-01 11 94732006 94732006 C A KDM4D Silent p.P490P 0.19 TCGA-IB-7651-01 11 94759017 94759017 G A KDM4E Missense_Mutation p.R99H 0.30 tolerated(0.13) benign(0.002) TCGA-IB-7651-01 11 94759193 94759193 C A KDM4E Missense_Mutation p.L158M 0.06 deleterious(0.01) possibly_damaging(0.835) TCGA-IB-7651-01 11 94908712 94908712 T C SESN3 Missense_Mutation p.T448A 0.17 deleterious(0.01) possibly_damaging(0.578) TCGA-IB-7651-01 11 94924617 94924617 C T SESN3 Missense_Mutation p.R98H 0.19 tolerated(0.63) benign(0.132) TCGA-IB-7651-01 11 94924736 94924736 A G SESN3 Silent p.R58R 0.18 TCGA-IB-7651-01 11 95519306 95519306 G A FAM76B Missense_Mutation p.R114W 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 11 95555146 95555146 T G CEP57 Intron 0.13 TCGA-IB-7651-01 11 95713041 95713041 G T MAML2 Missense_Mutation p.L848I 0.22 unknown(0) TCGA-IB-7651-01 11 96092228 96092228 C T CCDC82 Missense_Mutation p.E499K 0.20 tolerated(0.09) benign(0.004) TCGA-IB-7651-01 11 9746232 9746232 G A SWAP70 Missense_Mutation p.E148K 0.17 tolerated(0.53) benign(0.146) TCGA-IB-7651-01 11 9761736 9761736 G T SWAP70 Missense_Mutation p.Q399H 0.19 tolerated(0.1) benign(0.376) TCGA-IB-7651-01 11 9874236 9874236 G A SBF2 Missense_Mutation p.P866L 0.19 deleterious(0.03) possibly_damaging(0.699) TCGA-IB-7651-01 11 99690411 99690411 T G CNTN5 Silent p.A64A 0.10 TCGA-IB-7651-01 11 99690413 99690413 C T CNTN5 Missense_Mutation p.S65F 0.09 tolerated_low_confidence(0.09) possibly_damaging(0.643) TCGA-IB-7651-01 11 99872819 99872819 A G CNTN5 Missense_Mutation p.T311A 0.17 tolerated(0.48) possibly_damaging(0.719) TCGA-IB-7651-01 12 10005919 10005919 A G CLEC2B Missense_Mutation p.C144R 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 100444940 100444940 C T UHRF1BP1L Missense_Mutation p.A1162T 0.22 tolerated(0.55) benign(0.002) TCGA-IB-7651-01 12 100550600 100550600 C A AC010203.1 3'Flank 0.08 TCGA-IB-7651-01 12 100656045 100656045 C T DEPDC4 Missense_Mutation p.E233K 0.19 tolerated(0.36) benign(0.011) TCGA-IB-7651-01 12 100723037 100723037 C T SCYL2 Silent p.A567A 0.18 TCGA-IB-7651-01 12 100797876 100797876 C T SLC17A8 Nonsense_Mutation p.Q372* 0.20 TCGA-IB-7651-01 12 100806634 100806634 G T SLC17A8 Nonsense_Mutation p.G425* 0.15 TCGA-IB-7651-01 12 100930371 100930371 G T NR1H4 Nonsense_Mutation p.E282* 0.17 TCGA-IB-7651-01 12 100930822 100930822 C A NR1H4 Missense_Mutation p.P320T 0.16 deleterious(0) possibly_damaging(0.77) TCGA-IB-7651-01 12 101016096 101016096 G A GAS2L3 Missense_Mutation p.R231Q 0.22 deleterious(0) possibly_damaging(0.736) TCGA-IB-7651-01 12 101017454 101017454 A C GAS2L3 Missense_Mutation p.K291Q 0.19 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 12 101017514 101017514 A C GAS2L3 Missense_Mutation p.T311P 0.08 tolerated(0.11) benign(0.043) TCGA-IB-7651-01 12 101295517 101295517 C T ANO4 5'UTR 0.08 TCGA-IB-7651-01 12 101295607 101295607 T G ANO4 Missense_Mutation p.V15G 0.18 tolerated_low_confidence(0.41) benign(0.017) TCGA-IB-7651-01 12 10134657 10134657 G A CLEC12A Nonsense_Mutation p.W200* 0.17 TCGA-IB-7651-01 12 101436160 101436160 G A ANO4 Nonsense_Mutation p.W321* 0.20 TCGA-IB-7651-01 12 101560474 101560474 C A SLC5A8 Missense_Mutation p.A442S 0.14 deleterious(0.04) benign(0.364) TCGA-IB-7651-01 12 101576692 101576692 T C SLC5A8 Missense_Mutation p.T352A 0.10 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 12 101584320 101584320 C T SLC5A8 Nonsense_Mutation p.W253* 0.20 TCGA-IB-7651-01 12 10167267 10167267 G T CLEC12B Missense_Mutation p.Q112H 0.19 tolerated(0.06) benign(0.056) TCGA-IB-7651-01 12 10168306 10168306 C A CLEC12B Silent p.G220G 0.21 TCGA-IB-7651-01 12 101689296 101689296 C A UTP20 Nonsense_Mutation p.C430* 0.24 TCGA-IB-7651-01 12 101760367 101760367 C T UTP20 Silent p.L2053L 0.17 TCGA-IB-7651-01 12 102040565 102040565 C T MYBPC1 Silent p.C305C 0.17 TCGA-IB-7651-01 12 102056307 102056307 G T MYBPC1 Missense_Mutation p.R710M 0.21 deleterious(0) benign(0.367) TCGA-IB-7651-01 12 102067280 102067280 T G MYBPC1 Missense_Mutation p.S890A 0.18 deleterious(0) benign(0.314) TCGA-IB-7651-01 12 10206926 10206926 G A CLEC9A Missense_Mutation p.A50T 0.14 tolerated(1) benign(0.001) TCGA-IB-7651-01 12 102078191 102078191 A C MYBPC1 Intron 0.10 TCGA-IB-7651-01 12 102117041 102117041 G A CHPT1 Silent p.K292K 0.18 TCGA-IB-7651-01 12 102158045 102158045 A G GNPTAB Missense_Mutation p.Y884H 0.20 tolerated(0.15) benign(0.003) TCGA-IB-7651-01 12 102159023 102159023 G A GNPTAB Missense_Mutation p.P558S 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 10223882 10223882 G A CLEC1A 3'UTR 0.21 TCGA-IB-7651-01 12 102468224 102468224 C T NUP37 Missense_Mutation p.A297T 0.12 tolerated(0.64) benign(0) TCGA-IB-7651-01 12 102558319 102558319 G A PARPBP Missense_Mutation p.G200E 0.26 deleterious(0.04) possibly_damaging(0.774) TCGA-IB-7651-01 12 102576327 102576327 G A PARPBP Silent p.R395R 0.24 TCGA-IB-7651-01 12 102590515 102590515 C A PARPBP 3'Flank 0.28 TCGA-IB-7651-01 12 102811477 102811477 C T IGF1 3'UTR 0.14 TCGA-IB-7651-01 12 103238180 103238180 G T PAH Silent p.L333L 0.14 TCGA-IB-7651-01 12 10342543 10342543 C A TMEM52B Missense_Mutation p.A99D 0.19 tolerated(0.11) possibly_damaging(0.853) TCGA-IB-7651-01 12 103695853 103695853 G A C12orf42 3'UTR 0.16 TCGA-IB-7651-01 12 103696338 103696338 C T C12orf42 Splice_Site p.X211_splice 0.15 TCGA-IB-7651-01 12 103700054 103700054 G T C12orf42 Missense_Mutation p.P110H 0.10 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 12 10374440 10374440 T C GABARAPL1 Missense_Mutation p.Y115H 0.21 deleterious(0.02) benign(0.277) TCGA-IB-7651-01 12 103984787 103984787 C T STAB2 Missense_Mutation p.S65F 0.23 deleterious(0) possibly_damaging(0.529) TCGA-IB-7651-01 12 104015879 104015879 C T STAB2 Silent p.S159S 0.16 TCGA-IB-7651-01 12 104122724 104122724 C T STAB2 Missense_Mutation p.S1678L 0.15 tolerated(0.07) benign(0.122) TCGA-IB-7651-01 12 104133248 104133248 T C STAB2 Splice_Site p.X1918_splice 0.19 TCGA-IB-7651-01 12 104157272 104157272 G A STAB2 Silent p.S2497S 0.24 TCGA-IB-7651-01 12 104179235 104179235 C A NT5DC3 Missense_Mutation p.G403C 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 104340598 104340598 C A HSP90B1 Missense_Mutation p.A714D 0.20 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 12 104380828 104380828 A G TDG Missense_Mutation p.H398R 0.16 tolerated_low_confidence(0.21) benign(0.001) TCGA-IB-7651-01 12 104461826 104461826 A C HCFC2 Missense_Mutation p.K138N 0.20 deleterious(0) probably_damaging(0.977) TCGA-IB-7651-01 12 104487331 104487332 - A HCFC2 Frame_Shift_Ins p.N486Kfs*2 0.21 TCGA-IB-7651-01 12 104697806 104697806 G A EID3 Missense_Mutation p.A32T 0.22 tolerated(0.44) benign(0.012) TCGA-IB-7651-01 12 105151191 105151191 C T CHST11 Silent p.N223N 0.16 TCGA-IB-7651-01 12 105431901 105431901 G A ALDH1L2 Missense_Mutation p.L709F 0.21 deleterious(0.03) benign(0.037) TCGA-IB-7651-01 12 105582102 105582102 T G APPL2 Missense_Mutation p.N534T 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 10568293 10568293 T G KLRC3 Missense_Mutation p.S230R 0.17 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-IB-7651-01 12 10603785 10603785 C T KLRC1 Intron 0.15 TCGA-IB-7651-01 12 106460674 106460674 C T NUAK1 Missense_Mutation p.R631Q 0.20 tolerated(0.6) probably_damaging(0.996) TCGA-IB-7651-01 12 106532208 106532208 C A NUAK1 Missense_Mutation p.R75M 0.16 deleterious(0) possibly_damaging(0.905) TCGA-IB-7651-01 12 106633726 106633726 C A CKAP4 Missense_Mutation p.E295D 0.18 tolerated(0.11) benign(0.056) TCGA-IB-7651-01 12 106772100 106772100 G A POLR3B Silent p.L184L 0.19 TCGA-IB-7651-01 12 106857272 106857272 G T POLR3B Missense_Mutation p.D863Y 0.15 tolerated(0.06) benign(0.024) TCGA-IB-7651-01 12 106903307 106903307 C T POLR3B Silent p.L1128L 0.21 TCGA-IB-7651-01 12 107048102 107048102 A G RFX4 Silent p.Q105Q 0.13 TCGA-IB-7651-01 12 107126802 107126802 G A RFX4 Silent p.V533V 0.18 TCGA-IB-7651-01 12 107208523 107208523 C T RIC8B Missense_Mutation p.T61I 0.19 deleterious(0.01) benign(0.059) TCGA-IB-7651-01 12 107393758 107393758 G A CRY1 Nonsense_Mutation p.R263* 0.16 TCGA-IB-7651-01 12 10762505 10762505 C A MAGOHB Missense_Mutation p.K63N 0.13 deleterious(0) possibly_damaging(0.838) TCGA-IB-7651-01 12 10774566 10774566 G A STYK1 Missense_Mutation p.P325S 0.20 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 12 107914310 107914310 G T BTBD11 Missense_Mutation p.Q394H 0.20 tolerated(0.09) possibly_damaging(0.679) TCGA-IB-7651-01 12 107937887 107937887 G A BTBD11 Silent p.E487E 0.18 TCGA-IB-7651-01 12 108013842 108013842 C A BTBD11 Nonsense_Mutation p.C844* 0.27 TCGA-IB-7651-01 12 108051379 108051379 C A BTBD11 Missense_Mutation p.L1067M 0.23 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 108082406 108082406 G A PWP1 Missense_Mutation p.G49D 0.17 tolerated(1) benign(0) TCGA-IB-7651-01 12 108082504 108082504 G A PWP1 Missense_Mutation p.E82K 0.22 tolerated(0.09) benign(0.014) TCGA-IB-7651-01 12 108128027 108128027 G A PRDM4 Missense_Mutation p.A789V 0.21 deleterious_low_confidence(0.02) benign(0.054) TCGA-IB-7651-01 12 108145246 108145246 G A PRDM4 Nonsense_Mutation p.Q358* 0.06 TCGA-IB-7651-01 12 108169235 108169235 C T ASCL4 Silent p.R81R 0.14 TCGA-IB-7651-01 12 108589544 108589544 G T WSCD2 5'UTR 0.21 TCGA-IB-7651-01 12 108626655 108626655 G A WSCD2 Missense_Mutation p.G376D 0.18 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 12 108686528 108686528 T A CMKLR1 Missense_Mutation p.K71M 0.19 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 12 108913102 108913102 C T FICD Silent p.G409G 0.18 TCGA-IB-7651-01 12 109181823 109181823 G A SSH1 Missense_Mutation p.P1031S 0.18 tolerated_low_confidence(0.51) benign(0.007) TCGA-IB-7651-01 12 109201572 109201572 C T SSH1 Missense_Mutation p.E190K 0.20 deleterious(0.04) benign(0.103) TCGA-IB-7651-01 12 109278775 109278775 C A DAO Intron 0.17 TCGA-IB-7651-01 12 109278930 109278930 G A DAO Missense_Mutation p.G50S 0.14 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 109293208 109293208 G A DAO Missense_Mutation p.R290Q 0.13 deleterious(0.02) probably_damaging(0.993) TCGA-IB-7651-01 12 109306241 109306241 G A SVOP 3'UTR 0.21 TCGA-IB-7651-01 12 109332674 109332674 C T SVOP Missense_Mutation p.A211T 0.19 tolerated(0.41) benign(0.006) TCGA-IB-7651-01 12 109523652 109523652 G A USP30 Silent p.L490L 0.08 TCGA-IB-7651-01 12 109530459 109530459 C T ALKBH2 Missense_Mutation p.A45T 0.18 tolerated_low_confidence(0.75) benign(0.001) TCGA-IB-7651-01 12 109577565 109577565 G A ACACB Missense_Mutation p.G119R 0.18 tolerated_low_confidence(0.11) benign(0.002) TCGA-IB-7651-01 12 109604757 109604757 G A ACACB Missense_Mutation p.E249K 0.16 deleterious(0.01) benign(0.184) TCGA-IB-7651-01 12 109605787 109605787 G A ACACB Silent p.R291R 0.17 TCGA-IB-7651-01 12 109612034 109612034 C T ACACB Silent p.S405S 0.13 TCGA-IB-7651-01 12 10962247 10962247 A C TAS2R9 Missense_Mutation p.I143S 0.16 tolerated(0.05) possibly_damaging(0.657) TCGA-IB-7651-01 12 109629664 109629664 G A ACACB Missense_Mutation p.D770N 0.18 deleterious(0.03) benign(0.03) TCGA-IB-7651-01 12 109637233 109637233 C T ACACB Missense_Mutation p.T885M 0.20 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 12 109637282 109637282 G A ACACB Silent p.S901S 0.16 TCGA-IB-7651-01 12 109644617 109644617 G A ACACB Missense_Mutation p.V1006I 0.19 tolerated(1) benign(0.078) TCGA-IB-7651-01 12 109674992 109674992 G A ACACB Missense_Mutation p.R1490H 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 109697952 109697952 A G ACACB Intron 0.26 TCGA-IB-7651-01 12 109719515 109719515 C T FOXN4 Missense_Mutation p.A331T 0.14 tolerated(0.18) benign(0.079) TCGA-IB-7651-01 12 10978550 10978550 A C TAS2R10 Missense_Mutation p.F107V 0.16 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 12 109959007 109959007 C T UBE3B Missense_Mutation p.R711C 0.22 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 109967770 109967770 C T UBE3B Silent p.S901S 0.25 TCGA-IB-7651-01 12 110246189 110246189 G A TRPV4 Silent p.I157I 0.20 TCGA-IB-7651-01 12 110385234 110385234 A G GIT2 Missense_Mutation p.S490P 0.17 tolerated(0.38) benign(0) TCGA-IB-7651-01 12 110450942 110450942 C T ANKRD13A Missense_Mutation p.A81V 0.18 deleterious(0.02) benign(0.424) TCGA-IB-7651-01 12 110765515 110765515 T C ATP2A2 Missense_Mutation p.V263A 0.03 tolerated(0.09) benign(0.432) TCGA-IB-7651-01 12 110778497 110778497 C T ATP2A2 Silent p.L599L 0.20 TCGA-IB-7651-01 12 110784169 110784169 C T ATP2A2 Missense_Mutation p.S1008L 0.29 tolerated_low_confidence(0.07) benign(0.001) TCGA-IB-7651-01 12 110784227 110784227 C A ATP2A2 Silent p.I1027I 0.28 TCGA-IB-7651-01 12 11091357 11091357 G A TAS2R14 Silent p.I150I 0.18 TCGA-IB-7651-01 12 110960151 110960151 A G RAD9B Missense_Mutation p.S354G 0.30 tolerated(0.2) benign(0.009) TCGA-IB-7651-01 12 111078889 111078889 G A TCTN1 Missense_Mutation p.V347I 0.18 tolerated(0.07) benign(0.022) TCGA-IB-7651-01 12 111317744 111317744 A C CCDC63 Missense_Mutation p.N175T 0.27 deleterious(0.02) possibly_damaging(0.833) TCGA-IB-7651-01 12 111471949 111471949 C T CUX2 5'UTR 0.18 TCGA-IB-7651-01 12 111758430 111758430 C T CUX2 Missense_Mutation p.P873S 0.10 tolerated(0.2) benign(0.102) TCGA-IB-7651-01 12 111758478 111758478 G A CUX2 Missense_Mutation p.E889K 0.27 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 12 111776115 111776115 C T CUX2 Silent p.I1074I 0.13 TCGA-IB-7651-01 12 111785782 111785782 C T CUX2 Nonsense_Mutation p.R1372* 0.04 TCGA-IB-7651-01 12 111895132 111895132 C T ATXN2 Silent p.A1134A 0.13 TCGA-IB-7651-01 12 112182630 112182630 G A ACAD10 Missense_Mutation p.S664N 0.15 tolerated(0.35) benign(0) TCGA-IB-7651-01 12 112326328 112326328 C T MAPKAPK5 Nonsense_Mutation p.Q336* 0.23 TCGA-IB-7651-01 12 112481532 112481532 G A NAA25 Missense_Mutation p.A716V 0.08 tolerated(0.2) benign(0.021) TCGA-IB-7651-01 12 112509748 112509748 C A NAA25 Missense_Mutation p.E329D 0.26 deleterious(0.03) probably_damaging(0.997) TCGA-IB-7651-01 12 112579955 112579955 G T TRAFD1 Nonsense_Mutation p.E236* 0.23 TCGA-IB-7651-01 12 112622084 112622084 G T HECTD4 Silent p.A3416A 0.15 TCGA-IB-7651-01 12 112642296 112642296 G A HECTD4 Nonsense_Mutation p.R2609* 0.05 TCGA-IB-7651-01 12 112646316 112646316 G A HECTD4 Silent p.D2516D 0.07 TCGA-IB-7651-01 12 112919958 112919958 C T PTPN11 Silent p.S391S 0.17 TCGA-IB-7651-01 12 113328755 113328755 C T RPH3A Silent p.C574C 0.27 TCGA-IB-7651-01 12 113405976 113405976 C T OAS3 Missense_Mutation p.P1034L 0.28 deleterious(0.01) possibly_damaging(0.786) TCGA-IB-7651-01 12 113407771 113407771 C A OAS3 Missense_Mutation p.A1086D 0.17 tolerated(0.09) possibly_damaging(0.515) TCGA-IB-7651-01 12 113496015 113496015 C T DTX1 Silent p.H6H 0.23 TCGA-IB-7651-01 12 113496122 113496122 C T DTX1 Missense_Mutation p.A42V 0.25 deleterious(0.01) benign(0.06) TCGA-IB-7651-01 12 113496220 113496220 G A DTX1 Missense_Mutation p.D75N 0.17 deleterious(0) benign(0.229) TCGA-IB-7651-01 12 113545942 113545942 C T RASAL1 Missense_Mutation p.R488Q 0.24 tolerated(0.06) probably_damaging(0.974) TCGA-IB-7651-01 12 113553024 113553024 G A RASAL1 Missense_Mutation p.S350L 0.16 deleterious(0.03) possibly_damaging(0.59) TCGA-IB-7651-01 12 113599090 113599090 G A DDX54 Nonsense_Mutation p.R800* 0.18 TCGA-IB-7651-01 12 113603721 113603721 C T DDX54 Missense_Mutation p.V511I 0.24 tolerated(0.12) benign(0.362) TCGA-IB-7651-01 12 113698178 113698178 G A TPCN1 Missense_Mutation p.G112S 0.13 tolerated(0.16) possibly_damaging(0.453) TCGA-IB-7651-01 12 1137623 1137623 G T ERC1 Missense_Mutation p.S185I 0.16 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 12 113824778 113824778 G A PLBD2 Silent p.Q441Q 0.05 TCGA-IB-7651-01 12 113825591 113825591 C A PLBD2 Silent p.A494A 0.04 TCGA-IB-7651-01 12 11420871 11420871 T C PRB3 Silent p.P104P 0.18 TCGA-IB-7651-01 12 114282486 114282486 G A RBM19 Silent p.A924A 0.28 TCGA-IB-7651-01 12 114377943 114377943 G A RBM19 Missense_Mutation p.T587I 0.09 deleterious(0) probably_damaging(0.924) TCGA-IB-7651-01 12 115120759 115120759 G A TBX3 Missense_Mutation p.P83S 0.22 tolerated(0.38) benign(0.199) TCGA-IB-7651-01 12 11545836 11545836 C A PRB2 Missense_Mutation p.Q392H 0.09 tolerated_low_confidence(0.11) unknown(0) TCGA-IB-7651-01 12 11545869 11545869 T C PRB2 Silent p.P381P 0.09 TCGA-IB-7651-01 12 116410035 116410035 C T MED13L Missense_Mutation p.S1913N 0.18 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 12 116446921 116446921 G A MED13L Missense_Mutation p.R433C 0.19 deleterious(0) unknown(0) TCGA-IB-7651-01 12 116714891 116714891 C T MED13L Missense_Mutation p.D16N 0.15 deleterious(0) unknown(0) TCGA-IB-7651-01 12 116714945 116714945 G A MED13L 5'UTR 0.34 TCGA-IB-7651-01 12 117013978 117013978 G A MAP1LC3B2 Silent p.Q77Q 0.18 TCGA-IB-7651-01 12 117155658 117155658 T G C12orf49 Missense_Mutation p.K192T 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 117187661 117187661 G A RNFT2 Silent p.A33A 0.20 TCGA-IB-7651-01 12 117484630 117484630 C T TESC Missense_Mutation p.M121I 0.20 deleterious(0.01) possibly_damaging(0.794) TCGA-IB-7651-01 12 117494618 117494618 C T TESC Missense_Mutation p.D68N 0.15 tolerated(0.07) possibly_damaging(0.557) TCGA-IB-7651-01 12 117595739 117595739 G A FBXO21 Missense_Mutation p.R493C 0.21 deleterious(0) possibly_damaging(0.891) TCGA-IB-7651-01 12 117693744 117693744 T C NOS1 Missense_Mutation p.H877R 0.16 tolerated(0.37) benign(0) TCGA-IB-7651-01 12 117703293 117703293 T C NOS1 Missense_Mutation p.D655G 0.15 deleterious(0) probably_damaging(0.975) TCGA-IB-7651-01 12 117768514 117768514 G A NOS1 Missense_Mutation p.R121W 0.18 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-IB-7651-01 12 117914325 117914325 G A KSR2 Silent p.P842P 0.28 TCGA-IB-7651-01 12 118454605 118454605 C T RFC5 5'UTR 0.10 TCGA-IB-7651-01 12 118474256 118474256 G T WSB2 Missense_Mutation p.S240R 0.20 tolerated(0.06) possibly_damaging(0.773) TCGA-IB-7651-01 12 118480730 118480730 G T WSB2 Missense_Mutation p.L159M 0.18 deleterious(0) probably_damaging(0.93) TCGA-IB-7651-01 12 118829014 118829014 G T SUDS3 Missense_Mutation p.E148D 0.18 tolerated(0.27) benign(0.015) TCGA-IB-7651-01 12 119559878 119559878 C T SRRM4 Silent p.S156S 0.15 TCGA-IB-7651-01 12 119568492 119568492 C T SRRM4 Silent p.G208G 0.21 TCGA-IB-7651-01 12 119568590 119568590 C T SRRM4 Missense_Mutation p.P241L 0.22 tolerated_low_confidence(0.53) benign(0.007) TCGA-IB-7651-01 12 119568613 119568613 C A SRRM4 Missense_Mutation p.L249I 0.21 deleterious_low_confidence(0.05) possibly_damaging(0.627) TCGA-IB-7651-01 12 119592129 119592129 G A SRRM4 Silent p.S491S 0.17 TCGA-IB-7651-01 12 119631653 119631653 C T HSPB8 Missense_Mutation p.T194I 0.19 tolerated_low_confidence(0.11) benign(0.003) TCGA-IB-7651-01 12 119909945 119909945 T A CCDC60 Missense_Mutation p.I106N 0.19 deleterious(0.03) possibly_damaging(0.757) TCGA-IB-7651-01 12 119916949 119916949 G A CCDC60 Missense_Mutation p.R131H 0.18 deleterious(0.04) benign(0.041) TCGA-IB-7651-01 12 119957964 119957964 C T CCDC60 Missense_Mutation p.A336V 0.08 tolerated(0.17) benign(0.056) TCGA-IB-7651-01 12 119961570 119961570 C T CCDC60 Silent p.S392S 0.20 TCGA-IB-7651-01 12 120114475 120114475 C T PRKAB1 Silent p.S222S 0.21 TCGA-IB-7651-01 12 120135797 120135797 C T CIT Missense_Mutation p.A1896T 0.08 tolerated(0.37) benign(0.345) TCGA-IB-7651-01 12 120139738 120139738 C T CIT Missense_Mutation p.S1777N 0.22 tolerated(0.17) probably_damaging(0.999) TCGA-IB-7651-01 12 120168356 120168356 C T CIT Missense_Mutation p.A1144T 0.21 tolerated(0.09) possibly_damaging(0.644) TCGA-IB-7651-01 12 120195263 120195263 C T CIT Missense_Mutation p.R873Q 0.21 tolerated(0.44) benign(0.002) TCGA-IB-7651-01 12 120436420 120436420 G A CCDC64 Silent p.K175K 0.19 TCGA-IB-7651-01 12 120502561 120502561 C T CCDC64 Missense_Mutation p.R263W 0.18 deleterious(0.02) possibly_damaging(0.854) TCGA-IB-7651-01 12 120568522 120568522 G A GCN1L1 Silent p.G2533G 0.14 TCGA-IB-7651-01 12 120599349 120599349 C T GCN1L1 Missense_Mutation p.R794Q 0.17 possibly_damaging(0.791) TCGA-IB-7651-01 12 120602181 120602181 C A GCN1L1 Nonsense_Mutation p.G603* 0.16 TCGA-IB-7651-01 12 120606009 120606009 T C GCN1L1 Intron 0.19 TCGA-IB-7651-01 12 120650126 120650126 G A PXN Silent p.L603L 0.22 TCGA-IB-7651-01 12 120660699 120660699 C T PXN Missense_Mutation p.A154T 0.19 tolerated(0.14) probably_damaging(0.947) TCGA-IB-7651-01 12 120783401 120783401 T G MSI1 Missense_Mutation p.Y361S 0.15 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-IB-7651-01 12 120878420 120878420 G T COX6A1 3'UTR 0.23 TCGA-IB-7651-01 12 120984244 120984244 G A RNF10 Missense_Mutation p.R65H 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 121175748 121175748 C T ACADS Missense_Mutation p.A194V 0.18 tolerated(0.53) possibly_damaging(0.762) TCGA-IB-7651-01 12 121202852 121202852 A C SPPL3 Missense_Mutation p.S369A 0.20 tolerated(0.09) benign(0.098) TCGA-IB-7651-01 12 121437184 121437184 A G HNF1A Missense_Mutation p.T539A 0.15 tolerated(0.15) possibly_damaging(0.523) TCGA-IB-7651-01 12 121442209 121442209 C T C12orf43 Missense_Mutation p.S179N 0.08 tolerated(0.14) benign(0.004) TCGA-IB-7651-01 12 121681814 121681814 C T CAMKK2 Intron 0.17 TCGA-IB-7651-01 12 121757499 121757499 C A ANAPC5 Splice_Site p.X546_splice 0.23 TCGA-IB-7651-01 12 121758243 121758243 G T ANAPC5 Missense_Mutation p.S487Y 0.17 tolerated(0.17) benign(0.043) TCGA-IB-7651-01 12 121783678 121783678 C A ANAPC5 Missense_Mutation p.R185I 0.18 tolerated(0.19) benign(0.051) TCGA-IB-7651-01 12 121867810 121867810 G A KDM2B 3'UTR 0.21 TCGA-IB-7651-01 12 121878882 121878882 G A KDM2B Missense_Mutation p.R1147W 0.13 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 121880000 121880000 G T KDM2B Missense_Mutation p.L1082M 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 121880187 121880187 C T KDM2B Silent p.P1019P 0.13 TCGA-IB-7651-01 12 121881856 121881856 G A KDM2B Missense_Mutation p.R804W 0.22 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-IB-7651-01 12 121891035 121891035 C T KDM2B Missense_Mutation p.C616Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 12 1219453 1219453 G T ERC1 Missense_Mutation p.R419S 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-IB-7651-01 12 122097217 122097217 G A MORN3 Silent p.I61I 0.10 TCGA-IB-7651-01 12 122107269 122107269 C T MORN3 Missense_Mutation p.E41K 0.18 deleterious(0.01) benign(0.258) TCGA-IB-7651-01 12 122218727 122218727 C T TMEM120B 3'UTR 0.16 TCGA-IB-7651-01 12 122219028 122219028 G A RHOF Silent p.D99D 0.15 TCGA-IB-7651-01 12 122281734 122281734 C T HPD Missense_Mutation p.R279H 0.15 tolerated(0.05) benign(0.003) TCGA-IB-7651-01 12 122295256 122295256 C T HPD Missense_Mutation p.S59N 0.14 deleterious(0) possibly_damaging(0.806) TCGA-IB-7651-01 12 122337749 122337749 G A PSMD9 Missense_Mutation p.A151T 0.14 deleterious(0.03) probably_damaging(0.909) TCGA-IB-7651-01 12 122380800 122380800 G T WDR66 Splice_Site p.X371_splice 0.16 TCGA-IB-7651-01 12 12252009 12252009 T C BCL2L14 3'UTR 0.12 TCGA-IB-7651-01 12 122618405 122618405 C T MLXIP Missense_Mutation p.R535W 0.10 tolerated(0.16) possibly_damaging(0.582) TCGA-IB-7651-01 12 122620057 122620057 C A MLXIP Missense_Mutation p.H626N 0.16 tolerated(0.19) benign(0.093) TCGA-IB-7651-01 12 122620104 122620104 G A MLXIP Silent p.P641P 0.21 TCGA-IB-7651-01 12 122622746 122622746 G A MLXIP Silent p.R720R 0.19 TCGA-IB-7651-01 12 122669187 122669187 G A LRRC43 Missense_Mutation p.R91H 0.06 deleterious(0.05) benign(0) TCGA-IB-7651-01 12 122677357 122677357 C T LRRC43 Silent p.D385D 0.20 TCGA-IB-7651-01 12 122691403 122691403 G A B3GNT4 Missense_Mutation p.R202H 0.16 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 12 12274332 12274332 G A LRP6 Missense_Mutation p.H1524Y 0.14 tolerated(1) benign(0.016) TCGA-IB-7651-01 12 122826040 122826040 T G CLIP1 Missense_Mutation p.T571P 0.20 tolerated(0.1) benign(0.221) TCGA-IB-7651-01 12 122848584 122848584 C T CLIP1 Missense_Mutation p.G243D 0.07 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 122862247 122862247 C T CLIP1 Missense_Mutation p.G116S 0.21 deleterious(0.02) probably_damaging(1) TCGA-IB-7651-01 12 122958719 122958719 G A ZCCHC8 Silent p.V483V 0.18 TCGA-IB-7651-01 12 122962754 122962754 G A ZCCHC8 Missense_Mutation p.A409V 0.25 tolerated(0.23) benign(0.003) TCGA-IB-7651-01 12 123026646 123026646 A G KNTC1 Silent p.T165T 0.13 TCGA-IB-7651-01 12 123072361 123072361 A G KNTC1 Silent p.S1278S 0.15 TCGA-IB-7651-01 12 123082326 123082326 G A KNTC1 Silent p.T1468T 0.22 TCGA-IB-7651-01 12 12312866 12312866 G T LRP6 Missense_Mutation p.P771H 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 12 123186899 123186899 C T HCAR2 Missense_Mutation p.R311H 0.18 tolerated(0.45) benign(0.022) TCGA-IB-7651-01 12 123187521 123187521 G A HCAR2 Missense_Mutation p.L104F 0.21 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 12 123265728 123265728 A G CCDC62 Missense_Mutation p.T83A 0.19 tolerated(0.06) possibly_damaging(0.847) TCGA-IB-7651-01 12 123297931 123297931 A G CCDC62 Missense_Mutation p.I656V 0.19 tolerated(0.21) benign(0.206) TCGA-IB-7651-01 12 123339642 123339642 C T HIP1R Silent p.F273F 0.22 TCGA-IB-7651-01 12 12334299 12334299 C T LRP6 Missense_Mutation p.D351N 0.07 tolerated(0.29) benign(0.216) TCGA-IB-7651-01 12 123352062 123352062 C T VPS37B Silent p.R153R 0.14 TCGA-IB-7651-01 12 123462876 123462876 G A OGFOD2 Intron 0.17 TCGA-IB-7651-01 12 123463381 123463381 C A OGFOD2 Missense_Mutation p.L145M 0.17 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 12 123463481 123463481 A C OGFOD2 Missense_Mutation p.N178T 0.21 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 12 123485384 123485384 G A PITPNM2 Missense_Mutation p.R389C 0.17 deleterious(0.02) benign(0.28) TCGA-IB-7651-01 12 123494407 123494407 G A PITPNM2 Silent p.I211I 0.17 TCGA-IB-7651-01 12 123794273 123794273 A G SBNO1 Silent p.Y1142Y 0.10 TCGA-IB-7651-01 12 123814975 123814975 C T SBNO1 Silent p.S375S 0.10 TCGA-IB-7651-01 12 123889552 123889552 C T SETD8 Missense_Mutation p.A260V 0.16 deleterious(0.01) possibly_damaging(0.705) TCGA-IB-7651-01 12 123900293 123900293 G A RILPL2 3'UTR 0.22 TCGA-IB-7651-01 12 123950548 123950548 G T SNRNP35 Missense_Mutation p.R159I 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 123983096 123983096 G A RILPL1 Missense_Mutation p.P266S 0.17 tolerated(0.3) benign(0.017) TCGA-IB-7651-01 12 124221607 124221607 T C ATP6V0A2 Missense_Mutation p.V276A 0.20 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 12 124256171 124256171 G A DNAH10 Missense_Mutation p.E47K 0.13 benign(0.001) TCGA-IB-7651-01 12 124270422 124270422 C T DNAH10 Missense_Mutation p.R393C 0.19 probably_damaging(0.999) TCGA-IB-7651-01 12 124274538 124274538 G A DNAH10 Missense_Mutation p.R501H 0.17 benign(0.051) TCGA-IB-7651-01 12 124289558 124289558 T G DNAH10 Missense_Mutation p.I868M 0.19 benign(0.259) TCGA-IB-7651-01 12 124303737 124303737 G A DNAH10 Missense_Mutation p.E1196K 0.16 benign(0.002) TCGA-IB-7651-01 12 124320029 124320029 C T DNAH10 Missense_Mutation p.P1501L 0.18 probably_damaging(0.996) TCGA-IB-7651-01 12 124332579 124332579 C T DNAH10 Silent p.D1844D 0.19 TCGA-IB-7651-01 12 124335466 124335466 G A DNAH10 Missense_Mutation p.R1927H 0.20 benign(0.077) TCGA-IB-7651-01 12 124359997 124359997 C A DNAH10 Missense_Mutation p.L2602M 0.19 probably_damaging(0.998) TCGA-IB-7651-01 12 124383316 124383316 G A DNAH10 Missense_Mutation p.A3081T 0.22 possibly_damaging(0.557) TCGA-IB-7651-01 12 124397810 124397810 C T DNAH10 Missense_Mutation p.R3316W 0.18 possibly_damaging(0.734) TCGA-IB-7651-01 12 124415935 124415935 C A DNAH10 Missense_Mutation p.L4160I 0.19 probably_damaging(1) TCGA-IB-7651-01 12 124416568 124416568 C A DNAH10 Silent p.I4285I 0.06 TCGA-IB-7651-01 12 124421736 124421736 C T CCDC92 Missense_Mutation p.V289I 0.11 tolerated_low_confidence(0.19) benign(0.014) TCGA-IB-7651-01 12 124422143 124422143 C A CCDC92 Missense_Mutation p.S153I 0.20 tolerated(0.11) possibly_damaging(0.635) TCGA-IB-7651-01 12 124497096 124497096 A T ZNF664 Missense_Mutation p.R135S 0.12 deleterious(0.01) probably_damaging(0.976) TCGA-IB-7651-01 12 124497536 124497536 C T ZNF664 3'UTR 0.19 TCGA-IB-7651-01 12 124796398 124796398 A G FAM101A 5'UTR 0.14 TCGA-IB-7651-01 12 124798899 124798899 G A FAM101A Missense_Mutation p.R79H 0.20 deleterious(0) probably_damaging(0.959) TCGA-IB-7651-01 12 124798970 124798970 C T FAM101A Missense_Mutation p.H103Y 0.21 tolerated(0.09) possibly_damaging(0.622) TCGA-IB-7651-01 12 124799117 124799117 G A FAM101A 3'UTR 0.25 TCGA-IB-7651-01 12 124826572 124826572 G A NCOR2 Missense_Mutation p.P1662L 0.12 probably_damaging(0.951) TCGA-IB-7651-01 12 124827723 124827723 C T NCOR2 Silent p.T1588T 0.07 TCGA-IB-7651-01 12 12482845 12482845 G A MANSC1 3'UTR 0.17 TCGA-IB-7651-01 12 124856630 124856630 G A NCOR2 Silent p.S915S 0.20 TCGA-IB-7651-01 12 124885145 124885145 G A NCOR2 Missense_Mutation p.A572V 0.17 unknown(0) TCGA-IB-7651-01 12 124885186 124885186 G A NCOR2 Silent p.N558N 0.16 TCGA-IB-7651-01 12 12496182 12496182 G T MANSC1 Missense_Mutation p.L23M 0.16 deleterious(0.03) probably_damaging(0.981) TCGA-IB-7651-01 12 1250905 1250905 G T ERC1 Missense_Mutation p.K563N 0.16 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 12 125302125 125302125 C A SCARB1 Missense_Mutation p.Q85H 0.20 tolerated(0.54) possibly_damaging(0.525) TCGA-IB-7651-01 12 125397088 125397088 G A UBC Silent p.I410I 0.06 TCGA-IB-7651-01 12 125432718 125432718 G A DHX37 Silent p.P1100P 0.13 TCGA-IB-7651-01 12 125434989 125434989 G A DHX37 Missense_Mutation p.R1031W 0.15 deleterious(0) possibly_damaging(0.772) TCGA-IB-7651-01 12 125437016 125437016 G A DHX37 Silent p.G932G 0.13 TCGA-IB-7651-01 12 125509989 125509989 C T BRI3BP 3'UTR 0.13 TCGA-IB-7651-01 12 125576018 125576018 G A AACS Silent p.A173A 0.20 TCGA-IB-7651-01 12 125834834 125834834 G A TMEM132B Missense_Mutation p.A297T 0.19 deleterious(0.01) possibly_damaging(0.447) TCGA-IB-7651-01 12 126128621 126128621 G T TMEM132B Splice_Site p.X475_splice 0.14 TCGA-IB-7651-01 12 126128656 126128656 G T TMEM132B Missense_Mutation p.G486V 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 126138750 126138750 G T TMEM132B Missense_Mutation p.A911S 0.13 deleterious(0) probably_damaging(0.961) TCGA-IB-7651-01 12 12630240 12630240 C T DUSP16 Missense_Mutation p.V509M 0.17 tolerated(0.69) benign(0.003) TCGA-IB-7651-01 12 12814094 12814094 C A GPR19 3'UTR 0.10 TCGA-IB-7651-01 12 12815366 12815366 C A GPR19 Missense_Mutation p.R6I 0.16 tolerated_low_confidence(0.15) benign(0.038) TCGA-IB-7651-01 12 1291225 1291225 G A ERC1 Silent p.E670E 0.08 TCGA-IB-7651-01 12 129299465 129299465 C T SLC15A4 Missense_Mutation p.V233I 0.17 tolerated(0.57) benign(0.021) TCGA-IB-7651-01 12 129360481 129360481 C T GLT1D1 Missense_Mutation p.H31Y 0.17 deleterious(0.01) benign(0.291) TCGA-IB-7651-01 12 12938588 12938588 G A APOLD1 Intron 0.23 TCGA-IB-7651-01 12 12940622 12940622 A C APOLD1 3'UTR 0.19 TCGA-IB-7651-01 12 129566325 129566325 C T TMEM132D Silent p.E634E 0.20 TCGA-IB-7651-01 12 12974144 12974144 C T DDX47 Missense_Mutation p.R62C 0.16 deleterious(0) probably_damaging(0.923) TCGA-IB-7651-01 12 12974954 12974954 A C DDX47 Missense_Mutation p.R166S 0.15 deleterious(0.05) benign(0.02) TCGA-IB-7651-01 12 130185005 130185005 C T TMEM132D Silent p.V106V 0.16 TCGA-IB-7651-01 12 130185134 130185134 C A TMEM132D Missense_Mutation p.K63N 0.19 deleterious(0) probably_damaging(0.965) TCGA-IB-7651-01 12 130647687 130647687 A G FZD10 Missense_Mutation p.Q67R 0.22 tolerated(0.16) benign(0.004) TCGA-IB-7651-01 12 130898738 130898738 G A RIMBP2 Missense_Mutation p.L862F 0.17 tolerated(0.13) probably_damaging(0.961) TCGA-IB-7651-01 12 130919324 130919324 G A RIMBP2 Silent p.G719G 0.06 TCGA-IB-7651-01 12 130919411 130919411 G A RIMBP2 Silent p.S690S 0.19 TCGA-IB-7651-01 12 13102917 13102917 A G GPRC5D Silent p.I134I 0.19 TCGA-IB-7651-01 12 131466502 131466502 G T GPR133 Missense_Mutation p.Q128H 0.20 tolerated(0.06) benign(0.403) TCGA-IB-7651-01 12 131498749 131498749 C T GPR133 Missense_Mutation p.A446V 0.15 tolerated(0.15) benign(0.1) TCGA-IB-7651-01 12 131561384 131561384 C T GPR133 Silent p.N504N 0.15 TCGA-IB-7651-01 12 131622691 131622691 G A GPR133 Missense_Mutation p.A816T 0.19 deleterious(0.04) possibly_damaging(0.908) TCGA-IB-7651-01 12 131622774 131622774 C T GPR133 Silent p.L843L 0.11 TCGA-IB-7651-01 12 13208820 13208820 A G KIAA1467 Missense_Mutation p.I125V 0.20 tolerated(0.13) benign(0.143) TCGA-IB-7651-01 12 13232935 13232935 C T KIAA1467 Missense_Mutation p.P619S 0.09 tolerated(0.11) possibly_damaging(0.526) TCGA-IB-7651-01 12 132334409 132334409 G A MMP17 Missense_Mutation p.D423N 0.19 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 12 132393284 132393284 G A ULK1 Missense_Mutation p.D138N 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 12 132394520 132394520 G A ULK1 Missense_Mutation p.R261H 0.18 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 12 132405897 132405897 C A ULK1 Silent p.I1048I 0.21 TCGA-IB-7651-01 12 132426155 132426155 G A PUS1 Missense_Mutation p.S288N 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 132475998 132475998 T C EP400 Silent p.S892S 0.16 TCGA-IB-7651-01 12 132498065 132498065 G A EP400 Silent p.P1214P 0.22 TCGA-IB-7651-01 12 132502101 132502101 C T EP400 Silent p.S1315S 0.16 TCGA-IB-7651-01 12 132528242 132528242 C T EP400 Missense_Mutation p.S2140F 0.13 unknown(0) TCGA-IB-7651-01 12 132554069 132554069 C T EP400 Silent p.G2968G 0.18 TCGA-IB-7651-01 12 132589527 132589527 C T EP400NL Missense_Mutation p.S189F 0.17 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-IB-7651-01 12 132625245 132625245 C T DDX51 Silent p.P492P 0.08 TCGA-IB-7651-01 12 132626412 132626412 C T DDX51 Silent p.E326E 0.17 TCGA-IB-7651-01 12 132627285 132627285 A G DDX51 Missense_Mutation p.S220P 0.19 tolerated(0.08) possibly_damaging(0.514) TCGA-IB-7651-01 12 132636673 132636673 C T NOC4L Silent p.S454S 0.15 TCGA-IB-7651-01 12 132636687 132636687 C T NOC4L Missense_Mutation p.A459V 0.13 tolerated(0.37) benign(0.003) TCGA-IB-7651-01 12 132681651 132681651 G C GALNT9 3'UTR 0.11 TCGA-IB-7651-01 12 132681759 132681759 C T GALNT9 Missense_Mutation p.E203K 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 133196281 133196281 G T P2RX2 Missense_Mutation p.S109I 0.17 tolerated(0.1) probably_damaging(0.915) TCGA-IB-7651-01 12 133201243 133201243 G A POLE 3'UTR 0.17 TCGA-IB-7651-01 12 133201511 133201511 C T POLE Missense_Mutation p.A2243T 0.17 tolerated(0.59) benign(0) TCGA-IB-7651-01 12 133220118 133220118 T C POLE Missense_Mutation p.H1440R 0.17 tolerated(0.28) benign(0) TCGA-IB-7651-01 12 133225890 133225890 A G POLE Splice_Site p.X1335_splice 0.14 TCGA-IB-7651-01 12 133225918 133225918 G T POLE Missense_Mutation p.L1327M 0.16 deleterious(0.03) benign(0.189) TCGA-IB-7651-01 12 133250198 133250198 G A POLE Missense_Mutation p.P441L 0.19 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 12 133253184 133253184 G C POLE Missense_Mutation p.P286R 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 133306443 133306443 C T ANKLE2 Missense_Mutation p.A769T 0.16 tolerated(0.46) benign(0.01) TCGA-IB-7651-01 12 133331501 133331501 G T ANKLE2 Missense_Mutation p.P134T 0.23 tolerated(1) benign(0) TCGA-IB-7651-01 12 133349840 133349840 C T GOLGA3 Missense_Mutation p.A1450T 0.15 tolerated(1) benign(0.001) TCGA-IB-7651-01 12 133359027 133359027 T C GOLGA3 Missense_Mutation p.N1107S 0.17 tolerated(0.07) benign(0.121) TCGA-IB-7651-01 12 133428227 133428227 T C CHFR Missense_Mutation p.D502G 0.05 tolerated(0.33) benign(0.15) TCGA-IB-7651-01 12 133732818 133732818 C A ZNF10 Missense_Mutation p.S329Y 0.17 deleterious(0) probably_damaging(0.942) TCGA-IB-7651-01 12 133733668 133733668 C T ZNF10 3'UTR 0.11 TCGA-IB-7651-01 12 133779301 133779301 C T ZNF268 Silent p.F343F 0.16 TCGA-IB-7651-01 12 133780923 133780923 G T ZNF268 Missense_Mutation p.R884I 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 1346029 1346029 C T ERC1 Nonsense_Mutation p.R816* 0.08 TCGA-IB-7651-01 12 13716563 13716563 G A GRIN2B Silent p.N1203N 0.23 TCGA-IB-7651-01 12 13720117 13720117 C T GRIN2B Missense_Mutation p.D814N 0.14 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 13828724 13828724 C T GRIN2B Silent p.P360P 0.16 TCGA-IB-7651-01 12 13906396 13906396 G A GRIN2B Missense_Mutation p.L289F 0.13 deleterious(0.04) possibly_damaging(0.753) TCGA-IB-7651-01 12 14634068 14634068 C T ATF7IP Nonsense_Mutation p.R1077* 0.15 TCGA-IB-7651-01 12 14781607 14781607 A T GUCY2C Missense_Mutation p.I741N 0.18 deleterious(0) probably_damaging(0.967) TCGA-IB-7651-01 12 14805932 14805932 C A GUCY2C Missense_Mutation p.R496I 0.23 deleterious(0) possibly_damaging(0.863) TCGA-IB-7651-01 12 14947480 14947480 G T WBP11 Missense_Mutation p.P238T 0.04 tolerated_low_confidence(0.16) unknown(0) TCGA-IB-7651-01 12 14995976 14995976 G A ART4 Silent p.I24I 0.19 TCGA-IB-7651-01 12 14996086 14996086 C A ART4 5'UTR 0.21 TCGA-IB-7651-01 12 15095404 15095404 C T ARHGDIB 3'UTR 0.18 TCGA-IB-7651-01 12 15262298 15262298 C T RERG Missense_Mutation p.V116I 0.20 deleterious(0.02) benign(0.389) TCGA-IB-7651-01 12 15370385 15370385 C A RERG Silent p.G13G 0.20 TCGA-IB-7651-01 12 15654735 15654735 C T PTPRO Silent p.S281S 0.14 TCGA-IB-7651-01 12 15654981 15654981 C T PTPRO Silent p.I363I 0.18 TCGA-IB-7651-01 12 15739837 15739837 G A PTPRO Missense_Mutation p.E1088K 0.16 deleterious(0) benign(0.267) TCGA-IB-7651-01 12 15742452 15742452 T G PTPRO Missense_Mutation p.D1158E 0.22 tolerated(1) benign(0.002) TCGA-IB-7651-01 12 15803788 15803788 C T EPS8 Missense_Mutation p.R468H 0.14 tolerated(0.08) benign(0.024) TCGA-IB-7651-01 12 15807132 15807132 A G EPS8 Silent p.N399N 0.20 TCGA-IB-7651-01 12 1741887 1741887 C T WNT5B Silent p.C48C 0.14 TCGA-IB-7651-01 12 176596 176596 G T IQSEC3 Missense_Mutation p.R183I 0.12 deleterious(0.01) possibly_damaging(0.846) TCGA-IB-7651-01 12 18234333 18234333 T G RERGL Missense_Mutation p.E137A 0.14 deleterious(0) possibly_damaging(0.802) TCGA-IB-7651-01 12 18544112 18544112 A G PIK3C2G Silent p.R643R 0.12 TCGA-IB-7651-01 12 18552635 18552635 C T PIK3C2G Silent p.F682F 0.18 TCGA-IB-7651-01 12 18836151 18836151 A G PLCZ1 3'UTR 0.19 TCGA-IB-7651-01 12 18891833 18891833 G A CAPZA3 Missense_Mutation p.E211K 0.22 deleterious(0.01) probably_damaging(0.959) TCGA-IB-7651-01 12 19615452 19615452 G A AEBP2 Missense_Mutation p.S227N 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.815) TCGA-IB-7651-01 12 19671045 19671045 G A AEBP2 Silent p.K502K 0.12 TCGA-IB-7651-01 12 1992050 1992050 C T CACNA2D4 Missense_Mutation p.A490T 0.14 deleterious(0.04) possibly_damaging(0.823) TCGA-IB-7651-01 12 20522684 20522684 C T PDE3A Missense_Mutation p.R156C 0.18 tolerated(0.05) benign(0.22) TCGA-IB-7651-01 12 20523167 20523167 C T PDE3A Missense_Mutation p.P317S 0.20 tolerated(1) benign(0.125) TCGA-IB-7651-01 12 2055426 2055426 G A DCP1B Silent p.I600I 0.11 TCGA-IB-7651-01 12 2062076 2062076 G A DCP1B Missense_Mutation p.R344C 0.22 tolerated(0.15) benign(0.001) TCGA-IB-7651-01 12 2062369 2062369 G T DCP1B Missense_Mutation p.P246H 0.19 tolerated(0.06) benign(0.015) TCGA-IB-7651-01 12 2064720 2064720 T C DCP1B Missense_Mutation p.T177A 0.14 tolerated(0.08) benign(0.013) TCGA-IB-7651-01 12 20769306 20769306 C T PDE3A Missense_Mutation p.A471V 0.18 tolerated(0.48) benign(0.15) TCGA-IB-7651-01 12 20790055 20790055 G A PDE3A Missense_Mutation p.E675K 0.15 deleterious(0) benign(0.312) TCGA-IB-7651-01 12 20832995 20832995 C T PDE3A Silent p.Y1072Y 0.12 TCGA-IB-7651-01 12 20833316 20833316 C T PDE3A 3'UTR 0.23 TCGA-IB-7651-01 12 20890164 20890164 T C SLCO1C1 Silent p.C502C 0.19 TCGA-IB-7651-01 12 21014072 21014072 G A SLCO1B3 Missense_Mutation p.D161N 0.20 deleterious(0.01) benign(0.284) TCGA-IB-7651-01 12 21069345 21069345 G T SLCO1B3 3'UTR 0.19 TCGA-IB-7651-01 12 21200112 21200112 C T SLCO1B7 Nonsense_Mutation p.Q319* 0.14 TCGA-IB-7651-01 12 21294592 21294592 G T SLCO1B1 Missense_Mutation p.K28N 0.08 deleterious(0) possibly_damaging(0.904) TCGA-IB-7651-01 12 21355541 21355541 T C SLCO1B1 Missense_Mutation p.S418P 0.22 deleterious(0.02) probably_damaging(0.936) TCGA-IB-7651-01 12 21459897 21459897 C T SLCO1A2 Missense_Mutation p.V121I 0.14 tolerated(0.4) benign(0.014) TCGA-IB-7651-01 12 21487720 21487720 A C SLCO1A2 Intron 0.21 TCGA-IB-7651-01 12 21526313 21526313 C A IAPP Missense_Mutation p.L10I 0.19 tolerated(0.09) benign(0.041) TCGA-IB-7651-01 12 21598390 21598390 G T PYROXD1 Missense_Mutation p.S92I 0.13 deleterious(0.03) benign(0.152) TCGA-IB-7651-01 12 21624421 21624421 T C RECQL Silent p.T536T 0.20 TCGA-IB-7651-01 12 21644468 21644468 C T RECQL Missense_Mutation p.A67T 0.20 tolerated(0.58) benign(0) TCGA-IB-7651-01 12 21659878 21659878 T G GOLT1B Missense_Mutation p.F29V 0.20 deleterious(0.02) possibly_damaging(0.644) TCGA-IB-7651-01 12 21690005 21690005 A G GYS2 Silent p.D665D 0.21 TCGA-IB-7651-01 12 21795006 21795006 C T LDHB Missense_Mutation p.V159M 0.18 deleterious(0.01) possibly_damaging(0.595) TCGA-IB-7651-01 12 21926289 21926289 C T KCNJ8 Missense_Mutation p.A88T 0.16 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 12 21998636 21998636 G A ABCC9 Silent p.F999F 0.14 TCGA-IB-7651-01 12 22486947 22486947 C T ST8SIA1 Missense_Mutation p.A74T 0.19 tolerated(0.19) benign(0.048) TCGA-IB-7651-01 12 22487118 22487118 C T ST8SIA1 Missense_Mutation p.A17T 0.20 tolerated_low_confidence(0.09) benign(0.307) TCGA-IB-7651-01 12 22602810 22602810 T G C2CD5 Missense_Mutation p.N963H 0.19 tolerated(0.12) possibly_damaging(0.815) TCGA-IB-7651-01 12 22624371 22624371 T G C2CD5 Missense_Mutation p.N774H 0.19 tolerated(0.08) benign(0.017) TCGA-IB-7651-01 12 23716316 23716316 G T SOX5 Missense_Mutation p.A455D 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 12 23893858 23893858 G T SOX5 Silent p.A228A 0.19 TCGA-IB-7651-01 12 24970854 24970854 G T BCAT1 3'UTR 0.24 TCGA-IB-7651-01 12 25031471 25031471 C T BCAT1 Missense_Mutation p.G180E 0.07 deleterious(0) probably_damaging(0.96) TCGA-IB-7651-01 12 250375 250375 C T IQSEC3 Nonsense_Mutation p.R693* 0.12 TCGA-IB-7651-01 12 25232195 25232195 C T LRMP Silent p.R14R 0.16 TCGA-IB-7651-01 12 25232657 25232657 G T LRMP Missense_Mutation p.E68D 0.15 tolerated_low_confidence(0.06) benign(0.424) TCGA-IB-7651-01 12 25263104 25263104 C T CASC1 Missense_Mutation p.S617N 0.19 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.12 deleterious(0) benign(0.361) TCGA-IB-7651-01 12 25699363 25699363 T C IFLTD1 Missense_Mutation p.K146E 0.20 tolerated(0.23) benign(0.039) TCGA-IB-7651-01 12 25702320 25702320 T G IFLTD1 Missense_Mutation p.T84P 0.17 tolerated(0.23) possibly_damaging(0.464) TCGA-IB-7651-01 12 26217586 26217586 C T RASSF8 Nonsense_Mutation p.R87* 0.22 TCGA-IB-7651-01 12 26348816 26348816 G A SSPN Missense_Mutation p.G71S 0.10 tolerated(0.05) benign(0.25) TCGA-IB-7651-01 12 26809444 26809444 G A ITPR2 Missense_Mutation p.R744C 0.08 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 12 26816642 26816642 C T ITPR2 Silent p.S563S 0.20 TCGA-IB-7651-01 12 27069065 27069065 A G ASUN Missense_Mutation p.I373T 0.21 tolerated(0.5) benign(0.326) TCGA-IB-7651-01 12 271138 271138 C A IQSEC3 Silent p.I830I 0.20 TCGA-IB-7651-01 12 27116329 27116329 G T FGFR1OP2 Missense_Mutation p.A189S 0.22 deleterious(0.01) probably_damaging(0.967) TCGA-IB-7651-01 12 27152544 27152544 C A TM7SF3 Missense_Mutation p.E104D 0.19 tolerated(0.26) benign(0.42) TCGA-IB-7651-01 12 2717701 2717701 C A CACNA1C Silent p.S1147S 0.23 TCGA-IB-7651-01 12 2721099 2721099 G A CACNA1C Missense_Mutation p.A1270T 0.10 tolerated(0.14) benign(0.081) TCGA-IB-7651-01 12 27234975 27234975 C T C12orf71 Missense_Mutation p.D148N 0.11 tolerated(0.06) benign(0.203) TCGA-IB-7651-01 12 27475324 27475324 A C STK38L Missense_Mutation p.K444T 0.18 deleterious(0) probably_damaging(0.984) TCGA-IB-7651-01 12 274980 274980 C T IQSEC3 Silent p.D965D 0.20 TCGA-IB-7651-01 12 2760913 2760913 G A CACNA1C Nonsense_Mutation p.W1399* 0.09 TCGA-IB-7651-01 12 2774091 2774091 A C CACNA1C Missense_Mutation p.T1493P 0.15 tolerated(0.11) benign(0) TCGA-IB-7651-01 12 2775934 2775934 C T CACNA1C Missense_Mutation p.R1585C 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 27800872 27800872 T G PPFIBP1 Intron 0.29 TCGA-IB-7651-01 12 27869269 27869269 C T MRPS35 Missense_Mutation p.P67S 0.17 tolerated(0.67) benign(0.019) TCGA-IB-7651-01 12 2788897 2788897 C T CACNA1C Silent p.G1841G 0.14 TCGA-IB-7651-01 12 27908478 27908478 T - MRPS35 3'UTR 0.16 TCGA-IB-7651-01 12 2795331 2795331 G T CACNA1C Splice_Site p.X1942_splice 0.16 TCGA-IB-7651-01 12 2795339 2795339 G A CACNA1C Silent p.R1944R 0.15 TCGA-IB-7651-01 12 2797893 2797893 C A CACNA1C Missense_Mutation p.A2070D 0.19 tolerated_low_confidence(0.19) benign(0.001) TCGA-IB-7651-01 12 28636989 28636989 C A CCDC91 Missense_Mutation p.T369N 0.19 deleterious(0.03) benign(0.299) TCGA-IB-7651-01 12 2907877 2907877 G A FKBP4 Silent p.E133E 0.16 TCGA-IB-7651-01 12 29469871 29469871 C T FAR2 Silent p.Y351Y 0.19 TCGA-IB-7651-01 12 29624906 29624906 C T OVCH1 Missense_Mutation p.G562D 0.08 deleterious(0.04) probably_damaging(1) TCGA-IB-7651-01 12 29624909 29624909 C T OVCH1 Missense_Mutation p.C561Y 0.24 deleterious(0.04) benign(0.403) TCGA-IB-7651-01 12 29629167 29629167 G A OVCH1 Silent p.Y481Y 0.15 TCGA-IB-7651-01 12 29644056 29644056 G A OVCH1 Missense_Mutation p.S175F 0.23 deleterious(0) possibly_damaging(0.461) TCGA-IB-7651-01 12 29649590 29649590 G A OVCH1 Missense_Mutation p.R28C 0.18 tolerated(0.07) possibly_damaging(0.878) TCGA-IB-7651-01 12 29659826 29659826 G A TMTC1 Missense_Mutation p.R868C 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 29673629 29673629 T C TMTC1 Missense_Mutation p.I604V 0.20 tolerated(1) benign(0.003) TCGA-IB-7651-01 12 29673650 29673650 G A TMTC1 Missense_Mutation p.R597W 0.19 deleterious(0) probably_damaging(0.953) TCGA-IB-7651-01 12 29709921 29709921 G T TMTC1 Silent p.R515R 0.18 TCGA-IB-7651-01 12 2994494 2994494 G A RHNO1 5'UTR 0.18 TCGA-IB-7651-01 12 3000093 3000093 G T TULP3 5'UTR 0.14 TCGA-IB-7651-01 12 30806011 30806011 A G IPO8 Missense_Mutation p.I655T 0.19 tolerated(0.14) benign(0.028) TCGA-IB-7651-01 12 30823918 30823918 T G IPO8 Missense_Mutation p.K341T 0.19 deleterious(0) possibly_damaging(0.728) TCGA-IB-7651-01 12 30863426 30863426 G A CAPRIN2 Intron 0.19 TCGA-IB-7651-01 12 30873798 30873798 C T CAPRIN2 Missense_Mutation p.D699N 0.15 tolerated(0.16) possibly_damaging(0.876) TCGA-IB-7651-01 12 30878969 30878969 A G CAPRIN2 Silent p.D612D 0.20 TCGA-IB-7651-01 12 30906676 30906676 C T CAPRIN2 Missense_Mutation p.A8T 0.11 deleterious_low_confidence(0) benign(0.005) TCGA-IB-7651-01 12 31136041 31136041 C A TSPAN11 Missense_Mutation p.L220M 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 3120191 3120191 G A TEAD4 Missense_Mutation p.R83H 0.21 deleterious(0.01) probably_damaging(0.993) TCGA-IB-7651-01 12 3121335 3121335 G T TEAD4 Splice_Site p.X98_splice 0.15 TCGA-IB-7651-01 12 31254899 31254899 C A DDX11 Missense_Mutation p.L729M 0.06 deleterious(0.02) possibly_damaging(0.856) TCGA-IB-7651-01 12 31255888 31255888 C T DDX11 Silent p.G797G 0.14 TCGA-IB-7651-01 12 31600696 31600696 A G DENND5B Missense_Mutation p.F546S 0.22 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 319185 319185 T C SLC6A12 5'UTR 0.15 TCGA-IB-7651-01 12 32133908 32133908 C T KIAA1551 Missense_Mutation p.P7S 0.16 tolerated(0.07) possibly_damaging(0.728) TCGA-IB-7651-01 12 32137828 32137828 T C KIAA1551 Silent p.S1313S 0.19 TCGA-IB-7651-01 12 32481286 32481286 C T BICD1 Missense_Mutation p.R633W 0.19 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 12 32490443 32490443 T C BICD1 Missense_Mutation p.Y755H 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 32772647 32772647 C A FGD4 Missense_Mutation p.L452M 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 32772752 32772752 C A FGD4 Missense_Mutation p.P487T 0.19 deleterious(0.02) possibly_damaging(0.641) TCGA-IB-7651-01 12 32778624 32778624 C T FGD4 Nonsense_Mutation p.R558* 0.18 TCGA-IB-7651-01 12 32884840 32884840 G A DNM1L Missense_Mutation p.C470Y 0.17 deleterious(0.01) benign(0.034) TCGA-IB-7651-01 12 32895632 32895632 G T DNM1L Nonsense_Mutation p.E702* 0.09 TCGA-IB-7651-01 12 33003785 33003785 C A PKP2 Missense_Mutation p.L431F 0.21 deleterious(0) probably_damaging(0.912) TCGA-IB-7651-01 12 33031179 33031179 C T PKP2 Missense_Mutation p.R212H 0.17 tolerated(0.33) benign(0.018) TCGA-IB-7651-01 12 33559978 33559978 G T SYT10 Missense_Mutation p.L275I 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 33579114 33579114 T C SYT10 Silent p.A156A 0.19 TCGA-IB-7651-01 12 3387723 3387723 C T TSPAN9 Missense_Mutation p.T67M 0.18 deleterious(0.03) probably_damaging(0.986) TCGA-IB-7651-01 12 34178927 34178927 T C ALG10 Missense_Mutation p.C167R 0.18 deleterious(0.01) possibly_damaging(0.477) TCGA-IB-7651-01 12 3789439 3789439 C T EFCAB4B Missense_Mutation p.G102D 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 38710827 38710827 G A ALG10B Silent p.Q44Q 0.17 TCGA-IB-7651-01 12 38714900 38714900 G A ALG10B Missense_Mutation p.R436K 0.18 tolerated(0.52) benign(0.001) TCGA-IB-7651-01 12 3931121 3931121 G T PARP11 Missense_Mutation p.L156I 0.20 tolerated(0.36) benign(0.302) TCGA-IB-7651-01 12 39711958 39711958 G A KIF21A Silent p.S1275S 0.12 TCGA-IB-7651-01 12 39713771 39713771 G T KIF21A Missense_Mutation p.S1239Y 0.17 deleterious(0) probably_damaging(0.957) TCGA-IB-7651-01 12 40012798 40012798 T C ABCD2 Missense_Mutation p.D207G 0.21 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 40044117 40044117 A C C12orf40 Missense_Mutation p.K216T 0.18 tolerated(0.27) benign(0.067) TCGA-IB-7651-01 12 40223918 40223918 C A SLC2A13 Missense_Mutation p.A478S 0.18 tolerated(0.53) benign(0.074) TCGA-IB-7651-01 12 40499124 40499124 C T SLC2A13 Missense_Mutation p.A163T 0.18 tolerated(0.07) benign(0.009) TCGA-IB-7651-01 12 40653291 40653291 C T LRRK2 Silent p.S476S 0.09 TCGA-IB-7651-01 12 40693003 40693003 A G LRRK2 Missense_Mutation p.N1147S 0.19 tolerated(0.11) benign(0.019) TCGA-IB-7651-01 12 40697802 40697802 G A LRRK2 Missense_Mutation p.A1215T 0.20 tolerated(0.14) benign(0.002) TCGA-IB-7651-01 12 40702280 40702280 A C LRRK2 Missense_Mutation p.Q1324P 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 12 40704345 40704345 G A LRRK2 Missense_Mutation p.R1477Q 0.17 tolerated(0.44) possibly_damaging(0.853) TCGA-IB-7651-01 12 41333262 41333262 A G CNTN1 Missense_Mutation p.T452A 0.17 deleterious(0.05) benign(0.247) TCGA-IB-7651-01 12 41387041 41387041 C T CNTN1 Missense_Mutation p.P695S 0.15 deleterious(0.02) probably_damaging(1) TCGA-IB-7651-01 12 41410595 41410595 C T CNTN1 Nonsense_Mutation p.R766* 0.19 TCGA-IB-7651-01 12 41414236 41414236 C T CNTN1 Silent p.S839S 0.17 TCGA-IB-7651-01 12 41900458 41900458 G T PDZRN4 Missense_Mutation p.K348N 0.15 deleterious(0.03) probably_damaging(0.997) TCGA-IB-7651-01 12 41949534 41949534 G A PDZRN4 Missense_Mutation p.R446Q 0.16 deleterious(0.01) possibly_damaging(0.477) TCGA-IB-7651-01 12 42499768 42499768 G A GXYLT1 Missense_Mutation p.T239I 0.22 deleterious(0) possibly_damaging(0.833) TCGA-IB-7651-01 12 42853563 42853563 G A PRICKLE1 3'UTR 0.20 TCGA-IB-7651-01 12 42862549 42862549 A G PRICKLE1 Missense_Mutation p.F156S 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 432350 432350 G A KDM5A Missense_Mutation p.L725F 0.17 tolerated(0.09) possibly_damaging(0.699) TCGA-IB-7651-01 12 43777426 43777426 G T ADAMTS20 Missense_Mutation p.L1578I 0.16 tolerated(0.19) benign(0.126) TCGA-IB-7651-01 12 4385201 4385201 G A CCND2 Missense_Mutation p.V76I 0.18 deleterious(0.04) benign(0.438) TCGA-IB-7651-01 12 4385275 4385275 C T CCND2 Silent p.L100L 0.18 TCGA-IB-7651-01 12 43886389 43886389 T G ADAMTS20 Missense_Mutation p.N332T 0.17 deleterious(0.02) possibly_damaging(0.875) TCGA-IB-7651-01 12 44148466 44148466 T C PUS7L Missense_Mutation p.I195V 0.23 tolerated(0.18) benign(0.125) TCGA-IB-7651-01 12 44166052 44166052 C A IRAK4 Missense_Mutation p.P126H 0.17 deleterious(0.02) possibly_damaging(0.738) TCGA-IB-7651-01 12 44191256 44191256 C T TWF1 Splice_Site p.X211_splice 0.14 TCGA-IB-7651-01 12 4460469 4460469 C T C12orf5 Silent p.L103L 0.13 TCGA-IB-7651-01 12 4479908 4479908 C T FGF23 Silent p.T119T 0.13 TCGA-IB-7651-01 12 4488548 4488548 C A FGF23 Missense_Mutation p.Q67H 0.13 deleterious(0) probably_damaging(0.961) TCGA-IB-7651-01 12 44913879 44913879 G A NELL2 Missense_Mutation p.T820I 0.11 tolerated(0.14) benign(0.343) TCGA-IB-7651-01 12 44913995 44913995 A G NELL2 Silent p.C781C 0.11 TCGA-IB-7651-01 12 45105088 45105088 G A NELL2 Silent p.C442C 0.17 TCGA-IB-7651-01 12 45173747 45173747 C T NELL2 Missense_Mutation p.G182S 0.18 tolerated(0.13) benign(0.147) TCGA-IB-7651-01 12 45269691 45269691 A C NELL2 Intron 0.20 TCGA-IB-7651-01 12 45429866 45429866 C T DBX2 Silent p.P145P 0.17 TCGA-IB-7651-01 12 45567294 45567294 C T PLEKHA8P1 RNA 0.21 TCGA-IB-7651-01 12 4609488 4609488 C T C12orf4 Missense_Mutation p.R419Q 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-IB-7651-01 12 46233202 46233202 G A ARID2 Missense_Mutation p.S474N 0.19 tolerated(0.79) benign(0) TCGA-IB-7651-01 12 46254587 46254587 A G ARID2 Missense_Mutation p.T1593A 0.16 tolerated(0.13) benign(0.001) TCGA-IB-7651-01 12 46318633 46318633 G A SCAF11 Missense_Mutation p.P1262S 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 46321115 46321115 C T SCAF11 Missense_Mutation p.R790Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 4634664 4634664 A C C12orf4 Missense_Mutation p.F198V 0.14 deleterious(0) possibly_damaging(0.683) TCGA-IB-7651-01 12 4652985 4652985 G T RAD51AP1 Nonsense_Mutation p.E42* 0.18 TCGA-IB-7651-01 12 46591706 46591706 G A SLC38A1 Silent p.V420V 0.23 TCGA-IB-7651-01 12 46758265 46758265 G T SLC38A2 Silent p.T260T 0.08 TCGA-IB-7651-01 12 4708305 4708305 G T DYRK4 Missense_Mutation p.E224D 0.18 deleterious(0.05) possibly_damaging(0.521) TCGA-IB-7651-01 12 47168916 47168916 C T SLC38A4 Silent p.V405V 0.16 TCGA-IB-7651-01 12 47173814 47173814 C T SLC38A4 Splice_Site p.X165_splice 0.19 TCGA-IB-7651-01 12 4721773 4721773 C T DYRK4 Missense_Mutation p.R404W 0.16 deleterious(0.01) possibly_damaging(0.841) TCGA-IB-7651-01 12 4722727 4722727 G A DYRK4 Silent p.T457T 0.07 TCGA-IB-7651-01 12 4737071 4737071 G T AKAP3 Missense_Mutation p.L333I 0.14 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 47471719 47471719 T C AMIGO2 Missense_Mutation p.E356G 0.08 deleterious(0.03) benign(0.302) TCGA-IB-7651-01 12 47472178 47472178 C T AMIGO2 Missense_Mutation p.R203Q 0.16 tolerated(0.11) benign(0.01) TCGA-IB-7651-01 12 47629701 47629701 C T PCED1B Silent p.H285H 0.20 TCGA-IB-7651-01 12 47630184 47630184 T C PCED1B 3'UTR 0.17 TCGA-IB-7651-01 12 4796197 4796197 C A NDUFA9 Missense_Mutation p.L353M 0.23 deleterious(0.04) possibly_damaging(0.601) TCGA-IB-7651-01 12 48073291 48073291 C T RPAP3 Silent p.P424P 0.16 TCGA-IB-7651-01 12 48075569 48075569 C T RPAP3 Missense_Mutation p.A342T 0.17 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 12 48110168 48110168 C A ENDOU Missense_Mutation p.Q222H 0.16 deleterious(0.02) possibly_damaging(0.566) TCGA-IB-7651-01 12 48134179 48134179 C A RAPGEF3 Splice_Site p.X744_splice 0.17 TCGA-IB-7651-01 12 48141337 48141337 G A RAPGEF3 Nonsense_Mutation p.R516* 0.17 TCGA-IB-7651-01 12 48185667 48185667 C T HDAC7 Missense_Mutation p.R600Q 0.19 deleterious(0.02) probably_damaging(0.99) TCGA-IB-7651-01 12 48188548 48188548 G A HDAC7 Missense_Mutation p.P485S 0.17 tolerated(0.35) benign(0.004) TCGA-IB-7651-01 12 48238712 48238712 G A VDR Silent p.I417I 0.17 TCGA-IB-7651-01 12 48359923 48359923 C A TMEM106C Missense_Mutation p.L155M 0.05 deleterious(0) probably_damaging(0.979) TCGA-IB-7651-01 12 48391959 48391959 A G COL2A1 Missense_Mutation p.I112T 0.20 unknown(0) TCGA-IB-7651-01 12 48538862 48538862 G A PFKM Missense_Mutation p.A752T 0.14 tolerated(0.11) benign(0.047) TCGA-IB-7651-01 12 48577906 48577906 A G C12orf68 Translation_Start_Site p.M1? 0.18 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-IB-7651-01 12 48723547 48723547 G A H1FNT Missense_Mutation p.R158H 0.21 tolerated(0.29) possibly_damaging(0.715) TCGA-IB-7651-01 12 48736841 48736841 C T ZNF641 Missense_Mutation p.R411Q 0.17 tolerated(0.4) probably_damaging(0.994) TCGA-IB-7651-01 12 48739206 48739206 G A ZNF641 Missense_Mutation p.R124W 0.18 deleterious(0.01) possibly_damaging(0.745) TCGA-IB-7651-01 12 4874633 4874633 G T GALNT8 Missense_Mutation p.G561V 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 12 4881757 4881757 C T GALNT8 Silent p.S636S 0.13 TCGA-IB-7651-01 12 49165651 49165651 G A ADCY6 Missense_Mutation p.R965C 0.08 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 49170893 49170893 G A ADCY6 Missense_Mutation p.A457V 0.22 deleterious(0) possibly_damaging(0.889) TCGA-IB-7651-01 12 4919450 4919450 G T KCNA6 Missense_Mutation p.R81S 0.17 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 12 4920607 4920607 G A KCNA6 Missense_Mutation p.R467Q 0.19 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 12 49255902 49255902 C A RND1 Splice_Site p.X70_splice 0.20 TCGA-IB-7651-01 12 49298137 49298137 A C CCDC65 Missense_Mutation p.K6N 0.16 deleterious(0.02) possibly_damaging(0.714) TCGA-IB-7651-01 12 49312057 49312057 G T CCDC65 Splice_Site p.X204_splice 0.15 TCGA-IB-7651-01 12 49312112 49312112 C T CCDC65 Silent p.L222L 0.20 TCGA-IB-7651-01 12 49314776 49314776 C T CCDC65 Silent p.L364L 0.14 TCGA-IB-7651-01 12 49334929 49334929 G A ARF3 5'UTR 0.18 TCGA-IB-7651-01 12 49373312 49373312 G A WNT1 Missense_Mutation p.V56I 0.17 tolerated(0.36) benign(0.056) TCGA-IB-7651-01 12 49392084 49392084 G A DDN Missense_Mutation p.P192L 0.25 tolerated_low_confidence(0.11) probably_damaging(0.998) TCGA-IB-7651-01 12 49416497 49416497 C T KMT2D Missense_Mutation p.R5405H 0.17 unknown(0) TCGA-IB-7651-01 12 49420094 49420094 G T KMT2D Missense_Mutation p.L5219I 0.15 unknown(0) TCGA-IB-7651-01 12 49420396 49420396 G A KMT2D Missense_Mutation p.A5118V 0.19 unknown(0) TCGA-IB-7651-01 12 49420873 49420873 G A KMT2D Missense_Mutation p.A4959V 0.15 unknown(0) TCGA-IB-7651-01 12 49425501 49425501 C A KMT2D Missense_Mutation p.Q4329H 0.17 unknown(0) TCGA-IB-7651-01 12 49427246 49427246 G T KMT2D Missense_Mutation p.L3748I 0.16 benign(0.424) TCGA-IB-7651-01 12 49435265 49435265 C A KMT2D Missense_Mutation p.K2096N 0.13 probably_damaging(0.972) TCGA-IB-7651-01 12 49444835 49444835 A G KMT2D Silent p.P877P 0.19 TCGA-IB-7651-01 12 49485151 49485151 C T DHH Missense_Mutation p.A109T 0.19 tolerated(0.61) benign(0.363) TCGA-IB-7651-01 12 49488219 49488219 C T DHH Missense_Mutation p.G26D 0.16 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 12 49579133 49579133 C T TUBA1A Missense_Mutation p.R339H 0.19 deleterious_low_confidence(0.05) benign(0.024) TCGA-IB-7651-01 12 49691311 49691311 G T PRPH Missense_Mutation p.D390Y 0.12 deleterious(0) possibly_damaging(0.661) TCGA-IB-7651-01 12 49718041 49718041 G A TROAP Intron 0.15 TCGA-IB-7651-01 12 49719388 49719388 G A TROAP Missense_Mutation p.A148T 0.12 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 12 49743036 49743036 G T DNAJC22 Missense_Mutation p.Q127H 0.19 deleterious(0) probably_damaging(0.965) TCGA-IB-7651-01 12 49883338 49883338 G T SPATS2 Missense_Mutation p.V66L 0.15 deleterious(0) benign(0.253) TCGA-IB-7651-01 12 49893906 49893906 G A SPATS2 Missense_Mutation p.A253T 0.18 tolerated(1) probably_damaging(1) TCGA-IB-7651-01 12 49933258 49933258 C T KCNH3 Missense_Mutation p.T20M 0.20 deleterious(0) probably_damaging(0.985) TCGA-IB-7651-01 12 49942692 49942692 C A KCNH3 Missense_Mutation p.L402M 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 12 49943286 49943286 C T KCNH3 Missense_Mutation p.R511C 0.22 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 49948160 49948160 G T KCNH3 Missense_Mutation p.E653D 0.19 tolerated(1) benign(0.001) TCGA-IB-7651-01 12 49951765 49951765 G T KCNH3 3'UTR 0.22 TCGA-IB-7651-01 12 49993797 49993797 C A FAM186B Missense_Mutation p.E542D 0.19 tolerated(0.28) benign(0.19) TCGA-IB-7651-01 12 50039516 50039516 C A FMNL3 3'UTR 0.18 TCGA-IB-7651-01 12 50055822 50055822 C T FMNL3 Missense_Mutation p.E127K 0.21 deleterious(0.01) benign(0.102) TCGA-IB-7651-01 12 50188802 50188802 G A NCKAP5L Silent p.G947G 0.18 TCGA-IB-7651-01 12 50195630 50195630 C T NCKAP5L Splice_Site p.X117_splice 0.16 TCGA-IB-7651-01 12 5021052 5021052 G A KCNA1 Missense_Mutation p.A170T 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-IB-7651-01 12 5021067 5021067 A G KCNA1 Missense_Mutation p.M175V 0.11 tolerated(0.18) benign(0.057) TCGA-IB-7651-01 12 50232651 50232651 C T BCDIN3D Missense_Mutation p.A128T 0.13 tolerated(0.58) benign(0.019) TCGA-IB-7651-01 12 50295144 50295144 G T FAIM2 Intron 0.12 TCGA-IB-7651-01 12 50358797 50358798 - G AQP5 Frame_Shift_Ins p.A214Gfs*21 0.11 TCGA-IB-7651-01 12 50386039 50386039 G A RACGAP1 Missense_Mutation p.R523C 0.18 tolerated(0.09) benign(0.096) TCGA-IB-7651-01 12 50399109 50399109 C T RACGAP1 Missense_Mutation p.E119K 0.17 deleterious(0.01) possibly_damaging(0.598) TCGA-IB-7651-01 12 50475404 50475404 G A ASIC1 Missense_Mutation p.R566Q 0.20 tolerated(0.51) benign(0.038) TCGA-IB-7651-01 12 50483666 50483666 G T SMARCD1 Splice_Site p.X258_splice 0.22 TCGA-IB-7651-01 12 50499448 50499448 G A GPD1 Missense_Mutation p.A113T 0.14 tolerated(0.14) benign(0.091) TCGA-IB-7651-01 12 50529583 50529583 G T CERS5 Silent p.L268L 0.18 TCGA-IB-7651-01 12 50536960 50536960 G T CERS5 Missense_Mutation p.L111M 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 50575758 50575758 C T LIMA1 Silent p.E402E 0.08 TCGA-IB-7651-01 12 50575804 50575804 G A LIMA1 Missense_Mutation p.A387V 0.06 tolerated(0.74) benign(0.005) TCGA-IB-7651-01 12 50616055 50616055 T C LIMA1 Missense_Mutation p.R127G 0.19 tolerated(0.16) benign(0.009) TCGA-IB-7651-01 12 50848199 50848199 C T LARP4 Missense_Mutation p.R374C 0.11 deleterious(0.03) benign(0.028) TCGA-IB-7651-01 12 51068306 51068306 A G DIP2B Silent p.S230S 0.14 TCGA-IB-7651-01 12 51072569 51072569 G A DIP2B Missense_Mutation p.A342T 0.18 deleterious(0.04) possibly_damaging(0.902) TCGA-IB-7651-01 12 51203316 51203316 C A ATF1 Missense_Mutation p.A91D 0.17 tolerated(0.39) benign(0.1) TCGA-IB-7651-01 12 51279109 51279109 G T TMPRSS12 Nonsense_Mutation p.G245* 0.06 TCGA-IB-7651-01 12 51390647 51390647 C T SLC11A2 Missense_Mutation p.A291T 0.17 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 12 51390675 51390675 C T SLC11A2 Silent p.Q281Q 0.18 TCGA-IB-7651-01 12 51493563 51493563 C A TFCP2 Splice_Site p.X384_splice 0.17 TCGA-IB-7651-01 12 51502943 51502943 C A TFCP2 Missense_Mutation p.E226D 0.16 tolerated(0.29) benign(0.06) TCGA-IB-7651-01 12 5153586 5153586 G A KCNA5 Silent p.P91P 0.10 TCGA-IB-7651-01 12 51566352 51566352 G T TFCP2 5'UTR 0.27 TCGA-IB-7651-01 12 51585522 51585522 C T POU6F1 Silent p.E139E 0.19 TCGA-IB-7651-01 12 51589917 51589917 C T POU6F1 Missense_Mutation p.V29M 0.14 tolerated(0.21) benign(0.016) TCGA-IB-7651-01 12 51736376 51736376 G A CELA1 Silent p.S103S 0.18 TCGA-IB-7651-01 12 51752996 51752996 G A GALNT6 Missense_Mutation p.R430C 0.11 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 52080881 52080881 G A SCN8A Silent p.T164T 0.10 TCGA-IB-7651-01 12 52115445 52115445 C T SCN8A Missense_Mutation p.A584V 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 12 52309191 52309191 G A ACVRL1 Missense_Mutation p.G319S 0.20 tolerated(0.07) possibly_damaging(0.886) TCGA-IB-7651-01 12 52369215 52369215 C A ACVR1B Missense_Mutation p.S86R 0.17 tolerated(0.07) possibly_damaging(0.71) TCGA-IB-7651-01 12 52380666 52380666 G A ACVR1B Missense_Mutation p.A442T 0.18 tolerated(0.17) probably_damaging(0.999) TCGA-IB-7651-01 12 52450400 52450400 C T NR4A1 Missense_Mutation p.P390S 0.14 deleterious(0.02) probably_damaging(0.995) TCGA-IB-7651-01 12 52470606 52470606 C T C12orf44 Nonsense_Mutation p.Q97* 0.17 TCGA-IB-7651-01 12 52564981 52564981 G A KRT80 3'UTR 0.24 TCGA-IB-7651-01 12 52627084 52627084 T C KRT7 Missense_Mutation p.S2P 0.18 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-IB-7651-01 12 52685244 52685244 G T KRT81 Silent p.T2T 0.18 TCGA-IB-7651-01 12 52702259 52702259 A G KRT86 Missense_Mutation p.T451A 0.18 tolerated(0.11) benign(0.001) TCGA-IB-7651-01 12 52710773 52710773 G T KRT83 Missense_Mutation p.T262N 0.18 deleterious(0) possibly_damaging(0.853) TCGA-IB-7651-01 12 52715095 52715095 C T KRT83 Missense_Mutation p.G9S 0.19 tolerated(0.49) benign(0.014) TCGA-IB-7651-01 12 52758891 52758891 G A KRT85 Missense_Mutation p.R162C 0.21 deleterious(0) possibly_damaging(0.745) TCGA-IB-7651-01 12 52799988 52799988 G A KRT82 Missense_Mutation p.P25L 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-IB-7651-01 12 52863465 52863465 G A KRT6C Silent p.G471G 0.16 TCGA-IB-7651-01 12 52864412 52864412 G A KRT6C Silent p.Y360Y 0.14 TCGA-IB-7651-01 12 52886914 52886914 G A KRT6A Missense_Mutation p.A20V 0.17 deleterious(0.04) unknown(0) TCGA-IB-7651-01 12 52908948 52908948 G A KRT5 Silent p.G517G 0.17 TCGA-IB-7651-01 12 52913904 52913904 G A KRT5 Silent p.G59G 0.39 TCGA-IB-7651-01 12 52964527 52964527 C T KRT74 Missense_Mutation p.A312T 0.11 tolerated(0.15) benign(0.02) TCGA-IB-7651-01 12 53010165 53010165 C T KRT73 Splice_Site p.X150_splice 0.23 TCGA-IB-7651-01 12 53040535 53040535 G A KRT2 Silent p.G486G 0.07 TCGA-IB-7651-01 12 53042884 53042884 G A KRT2 Silent p.D288D 0.18 TCGA-IB-7651-01 12 53043735 53043735 C T KRT2 Missense_Mutation p.R275H 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-IB-7651-01 12 53044171 53044171 T G KRT2 Missense_Mutation p.N251T 0.19 deleterious(0) possibly_damaging(0.747) TCGA-IB-7651-01 12 53045633 53045633 G T KRT2 Silent p.G98G 0.12 TCGA-IB-7651-01 12 53045841 53045841 A G KRT2 Missense_Mutation p.V29A 0.17 tolerated(0.08) unknown(0) TCGA-IB-7651-01 12 53069496 53069496 A G KRT1 Missense_Mutation p.V503A 0.17 deleterious(0) unknown(0) TCGA-IB-7651-01 12 53073598 53073598 G A KRT1 Nonsense_Mutation p.R179* 0.17 TCGA-IB-7651-01 12 53186985 53186985 G A KRT3 Missense_Mutation p.R297C 0.24 deleterious(0.03) benign(0.398) TCGA-IB-7651-01 12 53189544 53189544 C A KRT3 Missense_Mutation p.G95C 0.10 tolerated(0.06) unknown(0) TCGA-IB-7651-01 12 53207653 53207653 T A KRT4 Missense_Mutation p.S64C 0.18 deleterious(0.01) probably_damaging(0.934) TCGA-IB-7651-01 12 53208169 53208169 C A KRT4 5'UTR 0.24 TCGA-IB-7651-01 12 53224076 53224076 C T KRT79 Silent p.K233K 0.15 TCGA-IB-7651-01 12 53227585 53227585 C T KRT79 Missense_Mutation p.A154T 0.15 deleterious(0) possibly_damaging(0.863) TCGA-IB-7651-01 12 53421816 53421816 G T EIF4B Missense_Mutation p.G275C 0.04 deleterious(0) probably_damaging(0.965) TCGA-IB-7651-01 12 53427635 53427635 C A EIF4B Missense_Mutation p.P342H 0.22 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 53454543 53454543 G A TENC1 Silent p.Q961Q 0.11 TCGA-IB-7651-01 12 53456960 53456960 G A TENC1 Missense_Mutation p.S1314N 0.08 tolerated(0.16) benign(0) TCGA-IB-7651-01 12 53495973 53495973 C T IGFBP6 3'UTR 0.15 TCGA-IB-7651-01 12 53497948 53497948 G A SOAT2 Silent p.T32T 0.15 TCGA-IB-7651-01 12 53565117 53565117 G A CSAD Missense_Mutation p.S214L 0.19 deleterious(0) probably_damaging(0.911) TCGA-IB-7651-01 12 53585269 53585269 C T ITGB7 3'UTR 0.18 TCGA-IB-7651-01 12 53590575 53590575 G A ITGB7 Silent p.L202L 0.19 TCGA-IB-7651-01 12 53607427 53607427 C T RARG Missense_Mutation p.G291R 0.18 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 12 53607995 53607995 G A RARG Nonsense_Mutation p.Q221* 0.17 TCGA-IB-7651-01 12 53675330 53675330 G A ESPL1 Missense_Mutation p.D847N 0.18 tolerated(0.07) benign(0.019) TCGA-IB-7651-01 12 53680262 53680262 C T ESPL1 Nonsense_Mutation p.Q1248* 0.18 TCGA-IB-7651-01 12 53708104 53708104 C T AAAS Missense_Mutation p.D223N 0.14 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 12 53722858 53722858 G T SP7 Missense_Mutation p.P123H 0.18 tolerated(0.11) probably_damaging(0.996) TCGA-IB-7651-01 12 53776411 53776411 C A SP1 Missense_Mutation p.A227D 0.15 tolerated(0.1) possibly_damaging(0.908) TCGA-IB-7651-01 12 53823757 53823757 G A AMHR2 Missense_Mutation p.R428K 0.20 tolerated(0.15) benign(0.001) TCGA-IB-7651-01 12 53823984 53823984 C T AMHR2 Missense_Mutation p.P448L 0.21 deleterious(0.02) possibly_damaging(0.482) TCGA-IB-7651-01 12 53825160 53825160 T A AMHR2 Missense_Mutation p.L542H 0.20 deleterious_low_confidence(0) possibly_damaging(0.869) TCGA-IB-7651-01 12 53861069 53861069 G A PCBP2 Missense_Mutation p.G264E 0.19 tolerated(0.08) possibly_damaging(0.585) TCGA-IB-7651-01 12 53873226 53873226 G A PCBP2 Silent p.%3D 0.22 TCGA-IB-7651-01 12 53880791 53880791 G A MAP3K12 Missense_Mutation p.R129C 0.18 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 12 53880946 53880946 G A MAP3K12 Missense_Mutation p.A77V 0.19 deleterious(0.03) possibly_damaging(0.596) TCGA-IB-7651-01 12 53898552 53898552 G A TARBP2 Missense_Mutation p.R189H 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 12 53899866 53899866 G A TARBP2 Silent p.E345E 0.17 TCGA-IB-7651-01 12 53901208 53901208 G A NPFF Silent p.D17D 0.19 TCGA-IB-7651-01 12 54059090 54059090 C T ATP5G2 3'UTR 0.22 TCGA-IB-7651-01 12 54333171 54333171 C T HOXC13 Missense_Mutation p.P161S 0.20 tolerated(0.32) possibly_damaging(0.735) TCGA-IB-7651-01 12 54367428 54367428 G A HOXC11 Missense_Mutation p.A135T 0.04 tolerated(0.57) benign(0.005) TCGA-IB-7651-01 12 54394142 54394142 C T HOXC9 Missense_Mutation p.P57L 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 54426931 54426931 T G HOXC5 Missense_Mutation p.F9V 0.05 deleterious(0.03) benign(0.035) TCGA-IB-7651-01 12 54448914 54448914 G A HOXC4 Silent p.P240P 0.20 TCGA-IB-7651-01 12 54576573 54576573 C A SMUG1 Intron 0.25 TCGA-IB-7651-01 12 54686881 54686881 T C NFE2 Silent p.A133A 0.17 TCGA-IB-7651-01 12 54795226 54795226 G A ITGA5 Silent p.S808S 0.09 TCGA-IB-7651-01 12 54797065 54797065 G T ITGA5 Missense_Mutation p.A607D 0.18 tolerated(0.14) benign(0.226) TCGA-IB-7651-01 12 54802689 54802689 G A ITGA5 Silent p.A211A 0.21 TCGA-IB-7651-01 12 54905762 54905762 A G NCKAP1L Missense_Mutation p.N272D 0.18 tolerated(0.52) possibly_damaging(0.593) TCGA-IB-7651-01 12 54920455 54920455 G A NCKAP1L Missense_Mutation p.R767H 0.14 deleterious(0.04) possibly_damaging(0.806) TCGA-IB-7651-01 12 54969384 54969384 G A PDE1B Missense_Mutation p.R412H 0.16 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 12 55028594 55028594 G T LACRT Missense_Mutation p.A11D 0.16 deleterious_low_confidence(0) unknown(0) TCGA-IB-7651-01 12 55252124 55252124 C A MUCL1 3'UTR 0.20 TCGA-IB-7651-01 12 55524378 55524378 C T OR9K2 Silent p.L276L 0.20 TCGA-IB-7651-01 12 55641685 55641685 T G OR6C74 Missense_Mutation p.L205R 0.06 deleterious_low_confidence(0) probably_damaging(1) TCGA-IB-7651-01 12 55714983 55714983 T G OR6C1 Missense_Mutation p.C200W 0.17 tolerated_low_confidence(0.14) benign(0.02) TCGA-IB-7651-01 12 55725792 55725792 T C OR6C3 Missense_Mutation p.F103S 0.19 tolerated_low_confidence(0.12) benign(0.035) TCGA-IB-7651-01 12 55863420 55863420 G T OR6C70 Missense_Mutation p.A168D 0.17 tolerated_low_confidence(0.64) benign(0.084) TCGA-IB-7651-01 12 56031342 56031342 C A OR10P1 Missense_Mutation p.L223M 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-IB-7651-01 12 56075767 56075767 C A METTL7B Missense_Mutation p.L77M 0.19 deleterious(0) possibly_damaging(0.905) TCGA-IB-7651-01 12 56092293 56092293 A G ITGA7 Missense_Mutation p.Y360H 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 56092537 56092537 C T ITGA7 Missense_Mutation p.G323S 0.15 tolerated(1) benign(0.007) TCGA-IB-7651-01 12 56113380 56113380 C A BLOC1S1 Missense_Mutation p.S150Y 0.19 deleterious(0) possibly_damaging(0.766) TCGA-IB-7651-01 12 56113489 56113489 C A BLOC1S1 3'Flank 0.22 TCGA-IB-7651-01 12 56121030 56121030 G A CD63 Missense_Mutation p.P54S 0.20 tolerated(0.07) benign(0.438) TCGA-IB-7651-01 12 56212807 56212807 C T ORMDL2 Silent p.S8S 0.15 TCGA-IB-7651-01 12 56333198 56333198 G T DGKA Splice_Site p.X199_splice 0.04 TCGA-IB-7651-01 12 56428846 56428846 G T IKZF4 Nonsense_Mutation p.E497* 0.20 TCGA-IB-7651-01 12 56429147 56429147 C A IKZF4 3'UTR 0.20 TCGA-IB-7651-01 12 56489582 56489582 C T ERBB3 Missense_Mutation p.R683W 0.16 deleterious(0.01) probably_damaging(0.987) TCGA-IB-7651-01 12 56492614 56492614 G T ERBB3 Missense_Mutation p.D922Y 0.18 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 12 56505030 56505030 C A PA2G4 Silent p.T334T 0.17 TCGA-IB-7651-01 12 56515509 56515509 C A ZC3H10 Missense_Mutation p.A388D 0.13 deleterious(0.04) benign(0.425) TCGA-IB-7651-01 12 56536096 56536096 G A ESYT1 Missense_Mutation p.G884S 0.04 deleterious(0.01) probably_damaging(0.981) TCGA-IB-7651-01 12 56552389 56552389 G T MYL6 Intron 0.19 TCGA-IB-7651-01 12 56554469 56554469 A T MYL6 Intron 0.17 TCGA-IB-7651-01 12 56558134 56558134 A G SMARCC2 Missense_Mutation p.V1174A 0.21 deleterious_low_confidence(0) unknown(0) TCGA-IB-7651-01 12 56558242 56558242 G A SMARCC2 Missense_Mutation p.S1138F 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-IB-7651-01 12 56565170 56565170 C A SMARCC2 Missense_Mutation p.E713D 0.20 tolerated(0.39) benign(0.217) TCGA-IB-7651-01 12 56620171 56620171 A G NABP2 Missense_Mutation p.Q135R 0.15 tolerated(0.41) benign(0.004) TCGA-IB-7651-01 12 56639194 56639194 C T ANKRD52 Missense_Mutation p.G791R 0.23 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 12 56641840 56641840 G A ANKRD52 Missense_Mutation p.R649C 0.19 tolerated(0.17) possibly_damaging(0.834) TCGA-IB-7651-01 12 56647086 56647086 G A ANKRD52 Silent p.G362G 0.18 TCGA-IB-7651-01 12 56647941 56647941 G A ANKRD52 Silent p.G272G 0.19 TCGA-IB-7651-01 12 56651145 56651145 C A ANKRD52 Missense_Mutation p.D38Y 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 56661127 56661127 C T COQ10A Intron 0.17 TCGA-IB-7651-01 12 56712063 56712063 C A PAN2 Missense_Mutation p.D1178Y 0.15 deleterious(0.03) probably_damaging(0.931) TCGA-IB-7651-01 12 56722398 56722398 C A PAN2 Missense_Mutation p.A104S 0.18 tolerated(0.67) benign(0.033) TCGA-IB-7651-01 12 56750351 56750351 G A STAT2 Missense_Mutation p.A2V 0.18 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 12 56811983 56811983 C T TIMELESS Missense_Mutation p.R1130Q 0.17 tolerated_low_confidence(0.26) benign(0.017) TCGA-IB-7651-01 12 56827200 56827200 C A TIMELESS Missense_Mutation p.V132F 0.19 deleterious(0) possibly_damaging(0.491) TCGA-IB-7651-01 12 56848296 56848296 C T MIP Nonsense_Mutation p.W34* 0.16 TCGA-IB-7651-01 12 56866494 56866494 G A GLS2 Silent p.G497G 0.21 TCGA-IB-7651-01 12 56915740 56915740 C T RBMS2 5'UTR 0.18 TCGA-IB-7651-01 12 57005806 57005806 C T BAZ2A Missense_Mutation p.A456T 0.15 tolerated(0.65) benign(0.041) TCGA-IB-7651-01 12 57032949 57032949 T C ATP5B Missense_Mutation p.H477R 0.18 tolerated_low_confidence(0.37) benign(0.001) TCGA-IB-7651-01 12 57109918 57109918 G T NACA Missense_Mutation p.S646Y 0.08 deleterious_low_confidence(0) benign(0.003) TCGA-IB-7651-01 12 57110723 57110723 C A NACA Intron 0.21 TCGA-IB-7651-01 12 57111655 57111655 G A NACA Intron 0.19 TCGA-IB-7651-01 12 57113606 57113606 A G NACA Missense_Mutation p.S570P 0.22 tolerated_low_confidence(0.42) benign(0.009) TCGA-IB-7651-01 12 57114403 57114403 G T NACA Missense_Mutation p.S304Y 0.17 deleterious_low_confidence(0.05) benign(0.001) TCGA-IB-7651-01 12 57115165 57115165 G T NACA Missense_Mutation p.S50Y 0.07 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-IB-7651-01 12 57345960 57345960 C T RDH16 Silent p.E269E 0.18 TCGA-IB-7651-01 12 57351092 57351092 C T RDH16 Missense_Mutation p.R52Q 0.21 tolerated(0.12) possibly_damaging(0.474) TCGA-IB-7651-01 12 57389159 57389159 C A GPR182 Missense_Mutation p.L56I 0.19 tolerated(0.05) probably_damaging(0.947) TCGA-IB-7651-01 12 57389519 57389519 G T GPR182 Missense_Mutation p.G176C 0.05 tolerated(0.09) possibly_damaging(0.521) TCGA-IB-7651-01 12 57389924 57389924 C T GPR182 Silent p.L311L 0.09 TCGA-IB-7651-01 12 57396934 57396934 G T ZBTB39 Missense_Mutation p.L590M 0.18 tolerated(0.18) probably_damaging(0.996) TCGA-IB-7651-01 12 57397488 57397488 C T ZBTB39 Missense_Mutation p.C405Y 0.21 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 12 57397725 57397725 C A ZBTB39 Missense_Mutation p.S326I 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-IB-7651-01 12 57431699 57431699 G A MYO1A Nonsense_Mutation p.R639* 0.18 TCGA-IB-7651-01 12 57432600 57432600 G A MYO1A Missense_Mutation p.A509V 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 57453749 57453749 C A TMEM194A Missense_Mutation p.Q416H 0.24 deleterious(0) benign(0.205) TCGA-IB-7651-01 12 57487215 57487215 G A NAB2 Silent p.T434T 0.16 TCGA-IB-7651-01 12 57493091 57493091 C T STAT6 Missense_Mutation p.R626Q 0.22 tolerated(0.32) probably_damaging(0.929) TCGA-IB-7651-01 12 57499295 57499295 C T STAT6 Silent p.S256S 0.18 TCGA-IB-7651-01 12 57499303 57499303 G A STAT6 Missense_Mutation p.R254W 0.17 deleterious(0.03) possibly_damaging(0.806) TCGA-IB-7651-01 12 57539109 57539109 G T LRP1 Missense_Mutation p.S226I 0.14 benign(0.074) TCGA-IB-7651-01 12 57543444 57543444 C A LRP1 Intron 0.25 TCGA-IB-7651-01 12 57559588 57559588 C T LRP1 Missense_Mutation p.A844V 0.17 benign(0.004) TCGA-IB-7651-01 12 57577289 57577289 C T LRP1 Silent p.H1930H 0.17 TCGA-IB-7651-01 12 57577893 57577893 C A LRP1 Silent p.G1985G 0.17 TCGA-IB-7651-01 12 57578941 57578941 G A LRP1 Missense_Mutation p.G2139D 0.16 probably_damaging(1) TCGA-IB-7651-01 12 57587035 57587035 C T LRP1 Silent p.C2544C 0.18 TCGA-IB-7651-01 12 57587393 57587393 C T LRP1 Missense_Mutation p.R2577C 0.17 probably_damaging(1) TCGA-IB-7651-01 12 57587714 57587714 C T LRP1 Missense_Mutation p.R2613W 0.17 possibly_damaging(0.66) TCGA-IB-7651-01 12 57588276 57588276 C T LRP1 Silent p.R2686R 0.09 TCGA-IB-7651-01 12 57590814 57590814 C T LRP1 Missense_Mutation p.A2981V 0.10 benign(0.004) TCGA-IB-7651-01 12 57606279 57606279 G A LRP1 Missense_Mutation p.E4526K 0.15 probably_damaging(0.986) TCGA-IB-7651-01 12 57625629 57625629 G A SHMT2 Missense_Mutation p.A149T 0.16 deleterious(0.04) probably_damaging(0.996) TCGA-IB-7651-01 12 57626282 57626282 G A SHMT2 Missense_Mutation p.R214Q 0.18 tolerated(0.46) benign(0.181) TCGA-IB-7651-01 12 57626358 57626358 G T SHMT2 Missense_Mutation p.E239D 0.16 tolerated(0.11) benign(0.142) TCGA-IB-7651-01 12 57843728 57843728 C T INHBC Missense_Mutation p.L328F 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 57849173 57849173 G A INHBE 5'UTR 0.15 TCGA-IB-7651-01 12 57859671 57859671 G A GLI1 Missense_Mutation p.C242Y 0.20 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 12 57860099 57860099 G T GLI1 Missense_Mutation p.R280M 0.20 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 12 57864247 57864247 C T GLI1 Missense_Mutation p.A575V 0.16 tolerated(0.35) benign(0.005) TCGA-IB-7651-01 12 57864506 57864506 C A GLI1 Silent p.G661G 0.21 TCGA-IB-7651-01 12 57865846 57865846 G A GLI1 3'UTR 0.19 TCGA-IB-7651-01 12 57873102 57873102 G A ARHGAP9 Missense_Mutation p.L30F 0.09 tolerated(0.08) probably_damaging(0.999) TCGA-IB-7651-01 12 57968967 57968967 G A KIF5A Missense_Mutation p.R606Q 0.20 tolerated(0.18) benign(0.043) TCGA-IB-7651-01 12 57969516 57969516 G A KIF5A Missense_Mutation p.E667K 0.17 tolerated(0.06) possibly_damaging(0.907) TCGA-IB-7651-01 12 57994625 57994625 G T PIP4K2C Missense_Mutation p.S282I 0.17 deleterious(0) probably_damaging(0.98) TCGA-IB-7651-01 12 58005689 58005689 G A ARHGEF25 Intron 0.16 TCGA-IB-7651-01 12 58022910 58022910 T G B4GALNT1 Silent p.G244G 0.19 TCGA-IB-7651-01 12 58024955 58024955 G A B4GALNT1 Intron 0.20 TCGA-IB-7651-01 12 58142188 58142188 C T TSPAN31 3'Flank 0.18 TCGA-IB-7651-01 12 58144864 58144864 G A CDK4 Missense_Mutation p.R122C 0.22 tolerated(0.17) benign(0.031) TCGA-IB-7651-01 12 58145073 58145073 G T CDK4 Missense_Mutation p.L91M 0.18 deleterious(0) probably_damaging(0.972) TCGA-IB-7651-01 12 58151910 58151910 C T MARCH9 Missense_Mutation p.T178M 0.17 deleterious(0.04) benign(0.295) TCGA-IB-7651-01 12 58200264 58200264 A G AVIL Missense_Mutation p.I517T 0.09 deleterious(0) possibly_damaging(0.576) TCGA-IB-7651-01 12 58203397 58203397 C A AVIL Missense_Mutation p.A308S 0.21 deleterious(0.04) possibly_damaging(0.838) TCGA-IB-7651-01 12 58223343 58223343 C T CTDSP2 Missense_Mutation p.G34E 0.09 tolerated(0.21) benign(0.006) TCGA-IB-7651-01 12 58335665 58335665 G A XRCC6BP1 Missense_Mutation p.E61K 0.19 tolerated(0.9) benign(0.018) TCGA-IB-7651-01 12 5841705 5841705 G A ANO2 Missense_Mutation p.T509M 0.16 tolerated(0.09) benign(0.013) TCGA-IB-7651-01 12 59277343 59277343 T C LRIG3 Silent p.L425L 0.15 TCGA-IB-7651-01 12 59283900 59283900 G A LRIG3 Silent p.V179V 0.20 TCGA-IB-7651-01 12 59284508 59284508 G A LRIG3 Missense_Mutation p.L152F 0.22 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 5941725 5941725 G A ANO2 Silent p.S222S 0.22 TCGA-IB-7651-01 12 60169243 60169243 C T SLC16A7 Silent p.G389G 0.13 TCGA-IB-7651-01 12 6030260 6030260 C A ANO2 Missense_Mutation p.E156D 0.17 tolerated(0.1) benign(0.021) TCGA-IB-7651-01 12 6125267 6125267 C T VWF Missense_Mutation p.A1815T 0.18 deleterious(0.01) probably_damaging(0.948) TCGA-IB-7651-01 12 6128448 6128448 C T VWF Missense_Mutation p.R1379H 0.12 deleterious(0.01) benign(0.014) TCGA-IB-7651-01 12 62104134 62104134 C A FAM19A2 3'UTR 0.21 TCGA-IB-7651-01 12 62104139 62104139 C T FAM19A2 3'UTR 0.20 TCGA-IB-7651-01 12 6232045 6232045 C A VWF Intron 0.14 TCGA-IB-7651-01 12 62696619 62696619 A G USP15 Missense_Mutation p.Y89C 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 12 62775384 62775384 C T USP15 Silent p.A343A 0.19 TCGA-IB-7651-01 12 62777738 62777738 C T USP15 Missense_Mutation p.P403S 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-IB-7651-01 12 62861091 62861091 T G MON2 Missense_Mutation p.V35G 0.20 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 12 62996663 62996663 T C C12orf61 3'UTR 0.19 TCGA-IB-7651-01 12 63195669 63195669 C T PPM1H Missense_Mutation p.R228H 0.07 deleterious(0.04) probably_damaging(0.984) TCGA-IB-7651-01 12 6334663 6334663 G A CD9 Silent p.E46E 0.21 TCGA-IB-7651-01 12 63544452 63544452 G A AVPR1A Silent p.I55I 0.18 TCGA-IB-7651-01 12 64038261 64038261 G A DPY19L2 Missense_Mutation p.A242V 0.16 deleterious(0) benign(0.297) TCGA-IB-7651-01 12 6424222 6424222 T C PLEKHG6 Missense_Mutation p.F116L 0.12 deleterious(0.01) possibly_damaging(0.899) TCGA-IB-7651-01 12 6437436 6437436 G T PLEKHG6 3'UTR 0.29 TCGA-IB-7651-01 12 6438433 6438433 C T TNFRSF1A 3'UTR 0.23 TCGA-IB-7651-01 12 6438717 6438717 G A TNFRSF1A Missense_Mutation p.R377C 0.16 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 12 6442635 6442635 C T TNFRSF1A Missense_Mutation p.V124M 0.17 deleterious(0) probably_damaging(0.956) TCGA-IB-7651-01 12 64456834 64456834 C T SRGAP1 Silent p.S313S 0.19 TCGA-IB-7651-01 12 64485152 64485152 C T SRGAP1 Silent p.F511F 0.16 TCGA-IB-7651-01 12 64536230 64536230 G A SRGAP1 Silent p.L1012L 0.17 TCGA-IB-7651-01 12 6457292 6457292 C T SCNN1A Missense_Mutation p.R645Q 0.06 tolerated(0.17) possibly_damaging(0.586) TCGA-IB-7651-01 12 6457894 6457894 G A SCNN1A Missense_Mutation p.T602M 0.11 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 12 64664489 64664489 A G C12orf56 Silent p.T370T 0.20 TCGA-IB-7651-01 12 64818836 64818836 G A XPOT Silent p.R442R 0.17 TCGA-IB-7651-01 12 64841907 64841907 C A XPOT Missense_Mutation p.P962H 0.17 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-IB-7651-01 12 64895141 64895141 C T TBK1 Missense_Mutation p.R724C 0.16 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-IB-7651-01 12 65461485 65461485 G A WIF1 Silent p.H208H 0.18 TCGA-IB-7651-01 12 65462580 65462580 G T WIF1 Missense_Mutation p.P168T 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 65632541 65632541 G A LEMD3 Missense_Mutation p.R623H 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 6567973 6567973 G T TAPBPL Missense_Mutation p.R356M 0.18 deleterious(0) possibly_damaging(0.779) TCGA-IB-7651-01 12 65702408 65702408 G A MSRB3 Intron 0.17 TCGA-IB-7651-01 12 657400 657400 C T B4GALNT3 Nonsense_Mutation p.R264* 0.15 TCGA-IB-7651-01 12 65856975 65856975 G A MSRB3 Missense_Mutation p.R151H 0.17 deleterious(0.01) probably_damaging(0.951) TCGA-IB-7651-01 12 6601500 6601500 G A MRPL51 Silent p.H108H 0.16 TCGA-IB-7651-01 12 6602431 6602431 G A MRPL51 5'UTR 0.18 TCGA-IB-7651-01 12 6618917 6618917 G A NCAPD2 Silent p.L54L 0.05 TCGA-IB-7651-01 12 6619865 6619865 C T NCAPD2 Silent p.N111N 0.15 TCGA-IB-7651-01 12 6623541 6623541 G A NCAPD2 Missense_Mutation p.R233H 0.09 tolerated(0.36) benign(0.045) TCGA-IB-7651-01 12 6626806 6626806 G T NCAPD2 Missense_Mutation p.Q455H 0.17 deleterious(0.02) possibly_damaging(0.519) TCGA-IB-7651-01 12 66308936 66308936 G A HMGA2 Intron 0.20 TCGA-IB-7651-01 12 66547187 66547187 G A TMBIM4 Missense_Mutation p.L47F 0.16 tolerated(0.1) benign(0.062) TCGA-IB-7651-01 12 665887 665887 C T B4GALNT3 Silent p.V745V 0.22 TCGA-IB-7651-01 12 66641994 66641994 A G IRAK3 3'UTR 0.16 TCGA-IB-7651-01 12 6664931 6664931 C T IFFO1 Missense_Mutation p.A89T 0.10 deleterious(0) probably_damaging(0.937) TCGA-IB-7651-01 12 66700219 66700219 G T HELB Silent p.G234G 0.14 TCGA-IB-7651-01 12 6670153 6670153 G A NOP2 Missense_Mutation p.R464W 0.21 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 12 66718889 66718889 A G HELB Missense_Mutation p.T885A 0.16 deleterious(0) possibly_damaging(0.558) TCGA-IB-7651-01 12 6687287 6687287 C T CHD4 Nonsense_Mutation p.W1712* 0.20 TCGA-IB-7651-01 12 6690899 6690899 G T CHD4 Missense_Mutation p.P1533T 0.15 tolerated(0.38) possibly_damaging(0.908) TCGA-IB-7651-01 12 6700658 6700658 C T CHD4 Missense_Mutation p.R1105Q 0.18 deleterious(0) possibly_damaging(0.857) TCGA-IB-7651-01 12 6707221 6707221 C T CHD4 Silent p.K577K 0.20 TCGA-IB-7651-01 12 6729583 6729583 C T LPAR5 Missense_Mutation p.V278M 0.12 deleterious(0.05) probably_damaging(0.974) TCGA-IB-7651-01 12 6730346 6730346 G A LPAR5 Silent p.R23R 0.16 TCGA-IB-7651-01 12 6753300 6753300 T C ACRBP Intron 0.11 TCGA-IB-7651-01 12 67686551 67686551 C T CAND1 Missense_Mutation p.S121F 0.17 tolerated(0.13) possibly_damaging(0.786) TCGA-IB-7651-01 12 67699732 67699732 C A CAND1 Missense_Mutation p.L762M 0.07 deleterious(0.01) probably_damaging(0.99) TCGA-IB-7651-01 12 68052573 68052573 C A DYRK2 3'UTR 0.23 TCGA-IB-7651-01 12 6858017 6858017 C T MLF2 Missense_Mutation p.A231T 0.17 deleterious(0.02) probably_damaging(0.984) TCGA-IB-7651-01 12 68619463 68619463 T C IL26 Missense_Mutation p.Q25R 0.19 tolerated(0.18) benign(0.025) TCGA-IB-7651-01 12 68688962 68688962 A G MDM1 3'UTR 0.13 TCGA-IB-7651-01 12 68707511 68707511 C T MDM1 Missense_Mutation p.E508K 0.20 tolerated(0.45) benign(0.094) TCGA-IB-7651-01 12 69044201 69044202 - T RAP1B Frame_Shift_Ins p.V29Cfs*13 0.21 TCGA-IB-7651-01 12 69050899 69050899 C T RAP1B Missense_Mutation p.R163W 0.19 deleterious(0.03) benign(0.031) TCGA-IB-7651-01 12 69125432 69125432 G A NUP107 Missense_Mutation p.R644Q 0.07 deleterious(0) possibly_damaging(0.651) TCGA-IB-7651-01 12 69222680 69222680 G T MDM2 Missense_Mutation p.S218I 0.09 deleterious(0.01) probably_damaging(0.988) TCGA-IB-7651-01 12 6925373 6925373 C A CD4 Silent p.T253T 0.17 TCGA-IB-7651-01 12 6927707 6927707 G T CD4 Missense_Mutation p.R426M 0.16 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 12 6928490 6928490 A G CD4 Missense_Mutation p.I458V 0.15 tolerated(0.13) benign(0.031) TCGA-IB-7651-01 12 6936268 6936268 G A GPR162 Missense_Mutation p.A556T 0.21 tolerated_low_confidence(0.79) benign(0) TCGA-IB-7651-01 12 6946916 6946916 G A LEPREL2 Missense_Mutation p.D577N 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 6952223 6952223 C A GNB3 Missense_Mutation p.H62Q 0.16 tolerated(0.09) benign(0.335) TCGA-IB-7651-01 12 6958344 6958344 G A CDCA3 Silent p.L224L 0.09 TCGA-IB-7651-01 12 69653851 69653851 T C CPSF6 Missense_Mutation p.L448P 0.16 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 12 6970734 6970734 C T USP5 Silent p.V542V 0.11 TCGA-IB-7651-01 12 6976836 6976836 G A TPI1 Missense_Mutation p.A73T 0.22 tolerated(0.24) benign(0.075) TCGA-IB-7651-01 12 6979528 6979528 T G TPI1 Missense_Mutation p.I281S 0.13 deleterious(0) probably_damaging(0.947) TCGA-IB-7651-01 12 69991040 69991040 T G CCT2 Missense_Mutation p.S363A 0.18 deleterious(0) possibly_damaging(0.749) TCGA-IB-7651-01 12 70004637 70004637 G T LRRC10 5'UTR 0.16 TCGA-IB-7651-01 12 70049199 70049199 G T BEST3 Missense_Mutation p.L499M 0.10 tolerated_low_confidence(0.13) benign(0.001) TCGA-IB-7651-01 12 70049400 70049400 C A BEST3 Missense_Mutation p.A432S 0.09 tolerated(0.66) benign(0.004) TCGA-IB-7651-01 12 70149369 70149369 T C RAB3IP Missense_Mutation p.S77P 0.18 tolerated_low_confidence(0.05) benign(0.322) TCGA-IB-7651-01 12 70206614 70206614 A G RAB3IP Missense_Mutation p.D412G 0.18 deleterious(0.05) probably_damaging(0.971) TCGA-IB-7651-01 12 7024962 7024962 T G ENO2 5'UTR 0.14 TCGA-IB-7651-01 12 7045789 7045789 C A ATN1 Silent p.A453A 0.17 TCGA-IB-7651-01 12 7045981 7045981 C T ATN1 Silent p.H517H 0.16 TCGA-IB-7651-01 12 7046106 7046106 G T ATN1 Missense_Mutation p.S559I 0.19 benign(0.072) TCGA-IB-7651-01 12 7047972 7047972 G A ATN1 Missense_Mutation p.G949D 0.14 probably_damaging(0.999) TCGA-IB-7651-01 12 7061307 7061307 A G PTPN6 Missense_Mutation p.Y98C 0.12 tolerated(0.05) probably_damaging(0.973) TCGA-IB-7651-01 12 7064578 7064578 G A PTPN6 Missense_Mutation p.R226Q 0.16 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 12 7066930 7066930 G T PTPN6 Missense_Mutation p.Q396H 0.25 tolerated(0.4) benign(0.291) TCGA-IB-7651-01 12 70731292 70731292 C A CNOT2 Missense_Mutation p.S300Y 0.10 tolerated(0.18) benign(0.26) TCGA-IB-7651-01 12 70760741 70760741 G A KCNMB4 Missense_Mutation p.C76Y 0.20 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 12 70824545 70824545 C A KCNMB4 3'UTR 0.24 TCGA-IB-7651-01 12 7091893 7091893 G T LPCAT3 Missense_Mutation p.L104I 0.12 deleterious(0.04) probably_damaging(0.947) TCGA-IB-7651-01 12 70938438 70938438 C T PTPRB Missense_Mutation p.S1798N 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 70949649 70949649 C T PTPRB Splice_Site p.X1665_splice 0.17 TCGA-IB-7651-01 12 70953185 70953185 T G PTPRB Missense_Mutation p.K1551T 0.21 tolerated(0.12) benign(0.131) TCGA-IB-7651-01 12 70953285 70953285 T C PTPRB Missense_Mutation p.R1518G 0.20 deleterious(0.05) benign(0.007) TCGA-IB-7651-01 12 70974816 70974816 C A PTPRB Missense_Mutation p.V860F 0.17 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 12 70980889 70980889 C T PTPRB Missense_Mutation p.E737K 0.19 deleterious(0.02) probably_damaging(0.959) TCGA-IB-7651-01 12 70986112 70986112 C A PTPRB Missense_Mutation p.S577I 0.16 tolerated(0.41) possibly_damaging(0.586) TCGA-IB-7651-01 12 71029672 71029672 C A PTPRB Missense_Mutation p.G77V 0.17 tolerated_low_confidence(0.15) benign(0.067) TCGA-IB-7651-01 12 7169900 7169900 G T C1S Nonsense_Mutation p.E43* 0.15 TCGA-IB-7651-01 12 7173250 7173250 T C C1S Missense_Mutation p.W283R 0.12 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 7177355 7177355 C T C1S Silent p.S489S 0.15 TCGA-IB-7651-01 12 7177578 7177578 C A C1S Missense_Mutation p.L564M 0.24 tolerated(0.13) possibly_damaging(0.517) TCGA-IB-7651-01 12 71978503 71978503 C T LGR5 Missense_Mutation p.P905S 0.15 tolerated(0.13) benign(0.176) TCGA-IB-7651-01 12 72008644 72008644 C A ZFC3H1 Missense_Mutation p.R1777I 0.18 deleterious(0.02) benign(0.169) TCGA-IB-7651-01 12 72017193 72017193 T C ZFC3H1 Missense_Mutation p.Q1564R 0.17 tolerated(1) benign(0.009) TCGA-IB-7651-01 12 72024411 72024411 T C ZFC3H1 Silent p.T1231T 0.16 TCGA-IB-7651-01 12 72026135 72026135 C T ZFC3H1 Missense_Mutation p.E993K 0.17 tolerated(0.33) possibly_damaging(0.651) TCGA-IB-7651-01 12 72032277 72032277 G A ZFC3H1 Missense_Mutation p.P549L 0.20 tolerated(0.11) benign(0.008) TCGA-IB-7651-01 12 72057309 72057309 T G ZFC3H1 Missense_Mutation p.S28R 0.17 tolerated_low_confidence(0.06) benign(0.307) TCGA-IB-7651-01 12 72070775 72070775 C T THAP2 Missense_Mutation p.P192S 0.18 deleterious(0.02) probably_damaging(0.992) TCGA-IB-7651-01 12 72080331 72080331 C A TMEM19 5'UTR 0.17 TCGA-IB-7651-01 12 72083392 72083392 C T TMEM19 Missense_Mutation p.P51L 0.17 deleterious(0.01) probably_damaging(0.913) TCGA-IB-7651-01 12 72300817 72300817 G A TBC1D15 Missense_Mutation p.R417K 0.19 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 12 72416266 72416266 G T TPH2 Nonsense_Mutation p.E386* 0.18 TCGA-IB-7651-01 12 72425041 72425041 G A TPH2 Missense_Mutation p.A390T 0.16 deleterious(0.02) probably_damaging(0.986) TCGA-IB-7651-01 12 72425523 72425523 G T TPH2 3'UTR 0.20 TCGA-IB-7651-01 12 7249062 7249062 G A C1RL Silent p.G463G 0.12 TCGA-IB-7651-01 12 72771827 72771827 C A TRHDE Missense_Mutation p.A369D 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 7288002 7288002 A T CLSTN3 Missense_Mutation p.T155S 0.13 tolerated(0.18) benign(0.122) TCGA-IB-7651-01 12 7310163 7310163 G A CLSTN3 Missense_Mutation p.R869H 0.15 deleterious(0.01) probably_damaging(0.909) TCGA-IB-7651-01 12 7361053 7361053 G T PEX5 Missense_Mutation p.R409S 0.18 deleterious(0.01) benign(0.311) TCGA-IB-7651-01 12 7459295 7459295 G T ACSM4 Missense_Mutation p.R123I 0.20 deleterious(0) possibly_damaging(0.855) TCGA-IB-7651-01 12 7531634 7531634 G A CD163L1 Nonsense_Mutation p.R771* 0.20 TCGA-IB-7651-01 12 7531717 7531717 G A CD163L1 Missense_Mutation p.P743L 0.21 tolerated(0.37) benign(0.006) TCGA-IB-7651-01 12 75444592 75444592 G A KCNC2 Missense_Mutation p.T398I 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 75444616 75444616 G T KCNC2 Missense_Mutation p.A390D 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 7559140 7559140 C T CD163L1 Missense_Mutation p.V359M 0.16 deleterious(0) probably_damaging(0.951) TCGA-IB-7651-01 12 7559320 7559320 C T CD163L1 Missense_Mutation p.V299I 0.15 tolerated(0.73) possibly_damaging(0.751) TCGA-IB-7651-01 12 75692696 75692696 T C CAPS2 Missense_Mutation p.D321G 0.19 deleterious(0) probably_damaging(0.983) TCGA-IB-7651-01 12 75763911 75763911 C T GLIPR1L1 Silent p.A219A 0.17 TCGA-IB-7651-01 12 75875790 75875790 G A GLIPR1 Nonsense_Mutation p.W117* 0.17 TCGA-IB-7651-01 12 7639264 7639264 T A CD163 Silent p.G763G 0.13 TCGA-IB-7651-01 12 76442238 76442238 G A NAP1L1 Nonsense_Mutation p.Q383* 0.20 TCGA-IB-7651-01 12 76740146 76740146 A G BBS10 Missense_Mutation p.L540S 0.19 tolerated(0.49) benign(0.031) TCGA-IB-7651-01 12 76740403 76740403 A C BBS10 Missense_Mutation p.S454R 0.18 tolerated(0.14) benign(0.015) TCGA-IB-7651-01 12 76742101 76742101 G A BBS10 Missense_Mutation p.A13V 0.20 tolerated_low_confidence(0.53) benign(0.009) TCGA-IB-7651-01 12 76749664 76749664 A T OSBPL8 3'UTR 0.19 TCGA-IB-7651-01 12 76749729 76749729 G T OSBPL8 Missense_Mutation p.D870E 0.15 tolerated(0.2) benign(0.257) TCGA-IB-7651-01 12 76784265 76784265 G A OSBPL8 Missense_Mutation p.P368S 0.20 tolerated(0.54) benign(0.055) TCGA-IB-7651-01 12 77239492 77239492 C T ZDHHC17 Nonsense_Mutation p.R445* 0.06 TCGA-IB-7651-01 12 77239525 77239525 T C ZDHHC17 Missense_Mutation p.C456R 0.16 deleterious(0) benign(0.14) TCGA-IB-7651-01 12 77423632 77423632 C T E2F7 Silent p.P621P 0.17 TCGA-IB-7651-01 12 77438548 77438548 G A E2F7 Missense_Mutation p.S286F 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 12 78225229 78225229 T C NAV3 5'UTR 0.21 TCGA-IB-7651-01 12 78400927 78400927 G A NAV3 Missense_Mutation p.V537I 0.15 tolerated(0.22) benign(0.015) TCGA-IB-7651-01 12 78510602 78510602 A C NAV3 Missense_Mutation p.N896T 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 12 78531042 78531042 C T NAV3 Silent p.F1509F 0.17 TCGA-IB-7651-01 12 78571064 78571064 A G NAV3 Silent p.A1756A 0.20 TCGA-IB-7651-01 12 78583834 78583834 C A NAV3 Nonsense_Mutation p.Y2020* 0.14 TCGA-IB-7651-01 12 7864106 7864106 T C DPPA3 5'UTR 0.18 TCGA-IB-7651-01 12 7882073 7882073 C T CLEC4C 3'UTR 0.12 TCGA-IB-7651-01 12 7947749 7947749 C A NANOG 3'UTR 0.10 TCGA-IB-7651-01 12 7947777 7947777 T C NANOG 3'UTR 0.09 TCGA-IB-7651-01 12 7966715 7966715 T C SLC2A14 3'UTR 0.08 TCGA-IB-7651-01 12 7982451 7982451 A G SLC2A14 Missense_Mutation p.Y165H 0.18 deleterious(0.01) probably_damaging(0.929) TCGA-IB-7651-01 12 8048157 8048157 C T NANOGP1 RNA 0.05 TCGA-IB-7651-01 12 8050873 8050873 T C NANOGP1 RNA 0.12 TCGA-IB-7651-01 12 8083844 8083844 G T SLC2A3 Silent p.A169A 0.19 TCGA-IB-7651-01 12 8083913 8083913 C T SLC2A3 Silent p.S146S 0.15 TCGA-IB-7651-01 12 81102007 81102007 A C MYF6 Missense_Mutation p.K170T 0.19 tolerated(0.2) probably_damaging(0.991) TCGA-IB-7651-01 12 81102744 81102744 G T MYF6 3'UTR 0.20 TCGA-IB-7651-01 12 81111163 81111163 G T MYF5 Missense_Mutation p.K107N 0.11 deleterious(0.02) probably_damaging(1) TCGA-IB-7651-01 12 81111216 81111216 G A MYF5 Missense_Mutation p.R125K 0.19 deleterious(0) benign(0.273) TCGA-IB-7651-01 12 81111235 81111235 C T MYF5 Silent p.I131I 0.17 TCGA-IB-7651-01 12 81205351 81205351 G A LIN7A Missense_Mutation p.R199C 0.17 deleterious(0.02) benign(0.194) TCGA-IB-7651-01 12 81472066 81472066 C T ACSS3 Missense_Mutation p.S56F 0.17 tolerated(0.07) possibly_damaging(0.745) TCGA-IB-7651-01 12 81660794 81660794 C A PPFIA2 Missense_Mutation p.R1164S 0.18 deleterious(0) possibly_damaging(0.568) TCGA-IB-7651-01 12 81661781 81661781 G A PPFIA2 Silent p.S1132S 0.16 TCGA-IB-7651-01 12 81732974 81732974 G A PPFIA2 Nonsense_Mutation p.R845* 0.18 TCGA-IB-7651-01 12 8203160 8203160 G A FOXJ2 Missense_Mutation p.G527D 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 12 8211461 8211461 C A C3AR1 Missense_Mutation p.D441Y 0.14 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 12 8212009 8212009 A G C3AR1 Missense_Mutation p.V258A 0.14 tolerated(0.52) benign(0.001) TCGA-IB-7651-01 12 8290773 8290773 C T CLEC4A Missense_Mutation p.R202C 0.16 deleterious(0.02) benign(0.187) TCGA-IB-7651-01 12 83290240 83290240 T G TMTC2 Missense_Mutation p.L433R 0.18 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 12 83359596 83359596 G T TMTC2 Intron 0.21 TCGA-IB-7651-01 12 85255611 85255611 C A SLC6A15 Nonsense_Mutation p.E665* 0.19 TCGA-IB-7651-01 12 85449460 85449460 T G LRRIQ1 Missense_Mutation p.F297V 0.11 deleterious(0) possibly_damaging(0.56) TCGA-IB-7651-01 12 85531680 85531680 C A LRRIQ1 Missense_Mutation p.A1421D 0.18 tolerated(0.09) possibly_damaging(0.894) TCGA-IB-7651-01 12 85623425 85623425 A T LRRIQ1 Missense_Mutation p.K1651N 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 12 86272330 86272330 G A NTS Missense_Mutation p.A115T 0.21 tolerated(0.31) possibly_damaging(0.538) TCGA-IB-7651-01 12 8691851 8691851 T G CLEC4E Missense_Mutation p.E61A 0.20 tolerated(0.18) benign(0.114) TCGA-IB-7651-01 12 88380103 88380103 G T C12orf50 Missense_Mutation p.S303Y 0.12 deleterious(0.03) possibly_damaging(0.632) TCGA-IB-7651-01 12 88437384 88437384 T C C12orf29 Missense_Mutation p.W105R 0.23 deleterious(0) possibly_damaging(0.6) TCGA-IB-7651-01 12 88449353 88449353 C T CEP290 Silent p.Q2320Q 0.16 TCGA-IB-7651-01 12 88566449 88566449 C T TMTC3 Nonsense_Mutation p.R376* 0.15 TCGA-IB-7651-01 12 8926260 8926260 T G RIMKLB Missense_Mutation p.S347R 0.19 tolerated_low_confidence(0.24) benign(0.278) TCGA-IB-7651-01 12 8926329 8926329 G A RIMKLB Silent p.L370L 0.19 TCGA-IB-7651-01 12 8975302 8975302 G T A2ML1 Nonsense_Mutation p.E19* 0.20 TCGA-IB-7651-01 12 89814910 89814910 A C POC1B 3'UTR 0.19 TCGA-IB-7651-01 12 89885781 89885781 T C POC1B Silent p.V128V 0.08 TCGA-IB-7651-01 12 89985005 89985005 G A ATP2B1 Missense_Mutation p.S1140L 0.19 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-IB-7651-01 12 9002321 9002321 T C A2ML1 Silent p.S695S 0.17 TCGA-IB-7651-01 12 90024332 90024332 G T ATP2B1 Missense_Mutation p.A293D 0.16 deleterious(0) possibly_damaging(0.512) TCGA-IB-7651-01 12 90024380 90024380 G A ATP2B1 Missense_Mutation p.A277V 0.13 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 12 90049503 90049503 C T ATP2B1 Missense_Mutation p.G54E 0.17 deleterious(0.02) benign(0.041) TCGA-IB-7651-01 12 9010616 9010616 A C A2ML1 Missense_Mutation p.D1061A 0.21 tolerated(0.15) benign(0.098) TCGA-IB-7651-01 12 9016434 9016434 G A A2ML1 Missense_Mutation p.A1183T 0.21 tolerated(0.68) benign(0.011) TCGA-IB-7651-01 12 9020513 9020513 G T A2ML1 Missense_Mutation p.V1265F 0.17 deleterious(0.04) benign(0.089) TCGA-IB-7651-01 12 9083073 9083073 G T PHC1 Nonsense_Mutation p.G219* 0.16 TCGA-IB-7651-01 12 9089850 9089850 C T PHC1 Silent p.R852R 0.18 TCGA-IB-7651-01 12 9089855 9089855 G A PHC1 Missense_Mutation p.R854H 0.17 deleterious(0) unknown(0) TCGA-IB-7651-01 12 91347597 91347597 T C CCER1 Missense_Mutation p.E308G 0.09 tolerated(0.16) unknown(0) TCGA-IB-7651-01 12 91348413 91348413 G A CCER1 Missense_Mutation p.S36L 0.18 deleterious(0) possibly_damaging(0.776) TCGA-IB-7651-01 12 91371927 91371927 A G EPYC Missense_Mutation p.I93T 0.16 tolerated(0.1) benign(0.011) TCGA-IB-7651-01 12 91449450 91449450 G A KERA Silent p.A203A 0.18 TCGA-IB-7651-01 12 91449713 91449713 C T KERA Missense_Mutation p.A116T 0.16 deleterious(0.03) possibly_damaging(0.507) TCGA-IB-7651-01 12 91450049 91450049 T G KERA Missense_Mutation p.T4P 0.19 tolerated(0.28) benign(0) TCGA-IB-7651-01 12 91502072 91502072 T C LUM Missense_Mutation p.N229D 0.16 deleterious(0.02) benign(0.065) TCGA-IB-7651-01 12 91545540 91545540 G T DCN Missense_Mutation p.A259D 0.06 tolerated(0.64) benign(0.002) TCGA-IB-7651-01 12 9225459 9225459 C A A2M Silent p.V1255V 0.09 TCGA-IB-7651-01 12 9252027 9252027 C T A2M Missense_Mutation p.V551M 0.18 tolerated(0.13) possibly_damaging(0.73) TCGA-IB-7651-01 12 9268478 9268478 C T A2M 5'UTR 0.21 TCGA-IB-7651-01 12 9301557 9301557 C T PZP 3'UTR 0.15 TCGA-IB-7651-01 12 9317762 9317762 G T PZP Silent p.V820V 0.14 TCGA-IB-7651-01 12 93196191 93196191 T C EEA1 Missense_Mutation p.I887V 0.18 tolerated(1) benign(0.001) TCGA-IB-7651-01 12 93206839 93206839 C A EEA1 Missense_Mutation p.A654S 0.10 tolerated(0.09) probably_damaging(0.999) TCGA-IB-7651-01 12 93226446 93226446 C T EEA1 Missense_Mutation p.E366K 0.16 deleterious(0) probably_damaging(0.983) TCGA-IB-7651-01 12 9354925 9354925 C T PZP Missense_Mutation p.R157Q 0.17 deleterious(0.04) benign(0.002) TCGA-IB-7651-01 12 93895014 93895014 G T MRPL42 3'UTR 0.18 TCGA-IB-7651-01 12 94072579 94072579 G A CRADD Missense_Mutation p.R10H 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 12 94072626 94072626 G A CRADD Missense_Mutation p.V26I 0.19 tolerated(0.77) probably_damaging(0.996) TCGA-IB-7651-01 12 94673321 94673321 T C PLXNC1 Missense_Mutation p.V1224A 0.19 tolerated(0.3) probably_damaging(0.959) TCGA-IB-7651-01 12 94725559 94725559 G T CCDC41 Missense_Mutation p.L542I 0.20 deleterious(0.05) possibly_damaging(0.58) TCGA-IB-7651-01 12 94976014 94976014 C T TMCC3 Missense_Mutation p.A127T 0.19 tolerated(0.09) benign(0.362) TCGA-IB-7651-01 12 95228587 95228587 C T MIR492 3'Flank 0.13 TCGA-IB-7651-01 12 95416132 95416132 G T NR2C1 Missense_Mutation p.A562D 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-IB-7651-01 12 95422177 95422177 A G NR2C1 Missense_Mutation p.V506A 0.17 tolerated(0.15) benign(0.292) TCGA-IB-7651-01 12 95422292 95422292 A T NR2C1 Missense_Mutation p.S468T 0.15 tolerated(0.1) benign(0.273) TCGA-IB-7651-01 12 95453692 95453692 G A NR2C1 Silent p.D118D 0.13 TCGA-IB-7651-01 12 95602826 95602826 G A FGD6 Missense_Mutation p.A745V 0.09 tolerated(0.08) benign(0.013) TCGA-IB-7651-01 12 95611076 95611076 C A FGD6 5'UTR 0.22 TCGA-IB-7651-01 12 95922698 95922698 A C USP44 Nonsense_Mutation p.Y503* 0.19 TCGA-IB-7651-01 12 96131853 96131853 G T NTN4 Missense_Mutation p.L219M 0.04 tolerated(0.07) probably_damaging(1) TCGA-IB-7651-01 12 96386496 96386496 G A HAL Missense_Mutation p.S226F 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-IB-7651-01 12 96412579 96412579 C A LTA4H Nonsense_Mutation p.E272* 0.23 TCGA-IB-7651-01 12 96412999 96412999 A G LTA4H Silent p.L220L 0.19 TCGA-IB-7651-01 12 96641197 96641197 C T ELK3 Silent p.N229N 0.16 TCGA-IB-7651-01 12 97147575 97147575 A C C12orf55 Missense_Mutation p.K2580T 0.17 deleterious(0.01) benign(0) TCGA-IB-7651-01 12 9715589 9715589 T C RP11-726G1.1 RNA 0.23 TCGA-IB-7651-01 12 97157959 97157959 G A C12orf55 Missense_Mutation p.E2691K 0.13 tolerated(0.17) benign(0) TCGA-IB-7651-01 12 97303532 97303532 G A NEDD1 Missense_Mutation p.A6T 0.21 tolerated_low_confidence(0.23) benign(0.029) TCGA-IB-7651-01 12 98126309 98126309 G A RP11-1016B18.1 RNA 0.33 TCGA-IB-7651-01 12 987393 987393 C T WNK1 Nonsense_Mutation p.Q747* 0.13 TCGA-IB-7651-01 12 9875164 9875164 C A CLECL1 3'UTR 0.13 TCGA-IB-7651-01 12 98849496 98849496 C A SLC9A7P1 RNA 0.17 TCGA-IB-7651-01 12 98927591 98927591 A G TMPO Missense_Mutation p.K519R 0.18 tolerated_low_confidence(0.17) benign(0.019) TCGA-IB-7651-01 12 98941365 98941365 G T TMPO Missense_Mutation p.R256I 0.18 deleterious(0) probably_damaging(0.944) TCGA-IB-7651-01 12 99053094 99053094 G A APAF1 Missense_Mutation p.R228H 0.18 deleterious(0.01) benign(0.183) TCGA-IB-7651-01 12 99059345 99059345 G A APAF1 Missense_Mutation p.V324I 0.18 tolerated(0.54) benign(0.007) TCGA-IB-7651-01 12 99074166 99074166 G A APAF1 Missense_Mutation p.D678N 0.17 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 12 9913444 9913444 C T CD69 5'UTR 0.22 TCGA-IB-7651-01 12 99548174 99548174 C A ANKS1B Splice_Site p.X807_splice 0.21 TCGA-IB-7651-01 12 99837462 99837462 T C ANKS1B Missense_Mutation p.I522V 0.13 tolerated(0.11) possibly_damaging(0.683) TCGA-IB-7651-01 13 100193890 100193890 A C TM9SF2 Missense_Mutation p.D329A 0.21 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 13 100617583 100617583 C A ZIC5 3'UTR 0.16 TCGA-IB-7651-01 13 100617847 100617847 C A ZIC5 Silent p.G592G 0.16 TCGA-IB-7651-01 13 100622745 100622745 C A ZIC5 Missense_Mutation p.E395D 0.10 deleterious(0.03) benign(0.062) TCGA-IB-7651-01 13 100637299 100637299 C A ZIC2 Missense_Mutation p.P392H 0.14 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 13 100637318 100637318 C T ZIC2 Silent p.C398C 0.21 TCGA-IB-7651-01 13 101257327 101257327 T C TMTC4 Missense_Mutation p.D735G 0.14 deleterious(0.01) probably_damaging(0.933) TCGA-IB-7651-01 13 101277772 101277772 G A TMTC4 Intron 0.12 TCGA-IB-7651-01 13 101277781 101277781 G A TMTC4 Intron 0.05 TCGA-IB-7651-01 13 101287360 101287360 C T TMTC4 Missense_Mutation p.R431H 0.12 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 13 101710303 101710303 G A NALCN Missense_Mutation p.R1671C 0.13 deleterious(0.02) possibly_damaging(0.795) TCGA-IB-7651-01 13 101714357 101714357 C T NALCN Missense_Mutation p.R1573H 0.17 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 13 101735213 101735213 T C NALCN Missense_Mutation p.T1238A 0.05 tolerated(0.22) benign(0.05) TCGA-IB-7651-01 13 101777028 101777028 C T NALCN Missense_Mutation p.R708H 0.16 tolerated(0.31) benign(0.003) TCGA-IB-7651-01 13 102568812 102568812 G A FGF14 Intron 0.16 TCGA-IB-7651-01 13 102568890 102568890 T G FGF14 Intron 0.16 TCGA-IB-7651-01 13 103249462 103249462 C A TPP2 Missense_Mutation p.S25Y 0.20 deleterious(0) possibly_damaging(0.526) TCGA-IB-7651-01 13 103288009 103288009 C A TPP2 Missense_Mutation p.A489D 0.16 deleterious(0.01) possibly_damaging(0.702) TCGA-IB-7651-01 13 103338488 103338488 C T METTL21C Missense_Mutation p.D230N 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 13 103440220 103440220 G A KDELC1 Silent p.G449G 0.15 TCGA-IB-7651-01 13 103441551 103441551 G A KDELC1 Silent p.I368I 0.16 TCGA-IB-7651-01 13 103450919 103450919 T C KDELC1 Missense_Mutation p.I34M 0.19 deleterious(0) benign(0.336) TCGA-IB-7651-01 13 103504492 103504492 C T BIVM-ERCC5 Missense_Mutation p.A464V 0.12 tolerated(0.12) probably_damaging(0.971) TCGA-IB-7651-01 13 103698447 103698447 G A SLC10A2 3'UTR 0.12 TCGA-IB-7651-01 13 107145730 107145730 G T EFNB2 Silent p.I220I 0.14 TCGA-IB-7651-01 13 108518818 108518818 C T FAM155A Missense_Mutation p.A43T 0.15 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 13 108861101 108861101 G T LIG4 Missense_Mutation p.A839D 0.16 tolerated(0.98) benign(0.003) TCGA-IB-7651-01 13 108862042 108862042 A C LIG4 Nonsense_Mutation p.Y525* 0.17 TCGA-IB-7651-01 13 108863228 108863228 T C LIG4 Missense_Mutation p.Y130C 0.20 deleterious(0) possibly_damaging(0.906) TCGA-IB-7651-01 13 108881891 108881891 G A ABHD13 Missense_Mutation p.D109N 0.17 tolerated(0.32) benign(0.008) TCGA-IB-7651-01 13 109475617 109475617 C T MYO16 Missense_Mutation p.S341L 0.17 tolerated(0.26) benign(0.004) TCGA-IB-7651-01 13 109644787 109644787 A C MYO16 Missense_Mutation p.E789D 0.20 deleterious(0.04) benign(0.081) TCGA-IB-7651-01 13 109817315 109817315 C T MYO16 Missense_Mutation p.T1722I 0.17 tolerated_low_confidence(0.2) benign(0.043) TCGA-IB-7651-01 13 110435097 110435097 T C IRS2 Missense_Mutation p.T1102A 0.20 tolerated(0.14) benign(0.049) TCGA-IB-7651-01 13 110436549 110436549 C T IRS2 Missense_Mutation p.A618T 0.09 tolerated(0.39) benign(0.003) TCGA-IB-7651-01 13 110436569 110436569 C T IRS2 Missense_Mutation p.R611H 0.10 tolerated(0.07) benign(0.044) TCGA-IB-7651-01 13 110828977 110828977 C A COL4A1 Missense_Mutation p.Q988H 0.15 benign(0) TCGA-IB-7651-01 13 110853794 110853794 C A COL4A1 Missense_Mutation p.G359C 0.22 unknown(0) TCGA-IB-7651-01 13 111111123 111111123 G A COL4A2 Missense_Mutation p.A480T 0.04 benign(0.258) TCGA-IB-7651-01 13 111118398 111118398 C T COL4A2 Missense_Mutation p.A676V 0.07 benign(0.1) TCGA-IB-7651-01 13 111130421 111130421 G T COL4A2 Missense_Mutation p.G833C 0.21 benign(0.141) TCGA-IB-7651-01 13 111164356 111164356 A C COL4A2 Missense_Mutation p.T1653P 0.11 unknown(0) TCGA-IB-7651-01 13 111287135 111287135 G A CARKD Intron 0.12 TCGA-IB-7651-01 13 111329415 111329415 G T CARS2 Missense_Mutation p.L231M 0.21 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 13 111340107 111340107 C T CARS2 Missense_Mutation p.G178R 0.19 tolerated(0.41) benign(0.029) TCGA-IB-7651-01 13 111366616 111366616 C T ING1 5'Flank 0.14 TCGA-IB-7651-01 13 111368056 111368056 C A ING1 Missense_Mutation p.P89H 0.19 deleterious_low_confidence(0.02) benign(0.002) TCGA-IB-7651-01 13 111896285 111896285 T C ARHGEF7 Missense_Mutation p.Y297H 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 13 111953130 111953130 C T ARHGEF7 Missense_Mutation p.P567S 0.11 tolerated(0.05) possibly_damaging(0.887) TCGA-IB-7651-01 13 111992248 111992248 G A TEX29 Missense_Mutation p.A70T 0.17 tolerated(0.1) possibly_damaging(0.695) TCGA-IB-7651-01 13 113174253 113174253 C T TUBGCP3 Missense_Mutation p.A610T 0.16 deleterious(0) possibly_damaging(0.902) TCGA-IB-7651-01 13 113333706 113333706 G T C13orf35 Nonsense_Mutation p.E5* 0.17 TCGA-IB-7651-01 13 113439559 113439559 C T ATP11A Silent p.I50I 0.12 TCGA-IB-7651-01 13 113478723 113478723 C T ATP11A Nonsense_Mutation p.R286* 0.06 TCGA-IB-7651-01 13 113496682 113496682 C T ATP11A Missense_Mutation p.R600C 0.26 deleterious(0.05) benign(0.013) TCGA-IB-7651-01 13 113622757 113622757 A G MCF2L 5'Flank 0.15 TCGA-IB-7651-01 13 113634067 113634067 G T MCF2L Intron 0.25 TCGA-IB-7651-01 13 113740496 113740496 G T MCF2L Missense_Mutation p.S769I 0.21 tolerated(0.06) benign(0.33) TCGA-IB-7651-01 13 113744223 113744223 C T MCF2L Intron 0.18 TCGA-IB-7651-01 13 113803401 113803401 G A F10 Missense_Mutation p.R346H 0.22 deleterious(0.04) benign(0.307) TCGA-IB-7651-01 13 113803648 113803648 G T F10 Missense_Mutation p.K428N 0.05 deleterious(0.01) possibly_damaging(0.887) TCGA-IB-7651-01 13 113803779 113803779 C A F10 Missense_Mutation p.P472H 0.14 deleterious(0) benign(0.252) TCGA-IB-7651-01 13 113813025 113813025 C T PROZ Silent p.L17L 0.16 TCGA-IB-7651-01 13 113975904 113975904 C T LAMP1 Nonsense_Mutation p.R326* 0.13 TCGA-IB-7651-01 13 113980393 113980393 C T GRTP1 Silent p.P192P 0.10 TCGA-IB-7651-01 13 114156189 114156189 T C TMCO3 Silent p.S313S 0.22 TCGA-IB-7651-01 13 114203924 114203924 C A TMCO3 3'UTR 0.20 TCGA-IB-7651-01 13 114288234 114288234 C T TFDP1 Silent p.R168R 0.14 TCGA-IB-7651-01 13 114321980 114321980 G T GRK1 Missense_Mutation p.E93D 0.13 tolerated(0.29) probably_damaging(0.999) TCGA-IB-7651-01 13 114526473 114526473 C T GAS6 Missense_Mutation p.V510M 0.13 tolerated(0.1) benign(0.074) TCGA-IB-7651-01 13 114530064 114530064 G A GAS6 Missense_Mutation p.T461M 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-IB-7651-01 13 114531617 114531617 G A GAS6 Missense_Mutation p.A404V 0.19 tolerated(0.99) possibly_damaging(0.648) TCGA-IB-7651-01 13 114538727 114538727 G A GAS6 Intron 0.12 TCGA-IB-7651-01 13 114541118 114541118 G A GAS6 Silent p.C171C 0.12 TCGA-IB-7651-01 13 114795310 114795310 G A RASA3 Silent p.V142V 0.12 TCGA-IB-7651-01 13 115002285 115002285 G T CDC16 Missense_Mutation p.D39Y 0.17 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 13 115070355 115070355 C T UPF3A Missense_Mutation p.S465L 0.22 tolerated(0.11) benign(0.041) TCGA-IB-7651-01 13 115090319 115090319 G A CHAMP1 Nonsense_Mutation p.W334* 0.21 TCGA-IB-7651-01 13 19751686 19751686 C T TUBA3C Missense_Mutation p.G146D 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-IB-7651-01 13 19997079 19997079 G A TPTE2 3'UTR 0.17 TCGA-IB-7651-01 13 20025342 20025342 C A TPTE2 Missense_Mutation p.K255N 0.11 deleterious(0.01) benign(0.088) TCGA-IB-7651-01 13 20325517 20325517 C A PSPC1 Missense_Mutation p.K287N 0.17 deleterious(0.02) benign(0.062) TCGA-IB-7651-01 13 20409711 20409711 T C ZMYM5 3'Flank 0.25 TCGA-IB-7651-01 13 20411659 20411659 T G ZMYM5 3'UTR 0.26 TCGA-IB-7651-01 13 20625673 20625673 G A ZMYM2 Missense_Mutation p.R798H 0.23 tolerated(0.07) benign(0.006) TCGA-IB-7651-01 13 20635250 20635250 G A ZMYM2 Missense_Mutation p.A933T 0.22 tolerated(1) benign(0.002) TCGA-IB-7651-01 13 20660175 20660175 A G ZMYM2 3'UTR 0.10 TCGA-IB-7651-01 13 20660215 20660215 T G ZMYM2 3'UTR 0.17 TCGA-IB-7651-01 13 20716897 20716897 C T GJA3 Silent p.P177P 0.16 TCGA-IB-7651-01 13 20717142 20717142 C T GJA3 Missense_Mutation p.V96M 0.11 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 13 20763277 20763277 G A GJB2 Silent p.A148A 0.15 TCGA-IB-7651-01 13 20797589 20797589 C T GJB6 Missense_Mutation p.G11R 0.18 deleterious(0.01) possibly_damaging(0.835) TCGA-IB-7651-01 13 21212570 21212570 G A IFT88 Missense_Mutation p.A505T 0.18 tolerated(0.52) benign(0.099) TCGA-IB-7651-01 13 21303256 21303256 T C N6AMT2 Missense_Mutation p.Y203C 0.15 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 13 21357783 21357783 G T XPO4 3'UTR 0.12 TCGA-IB-7651-01 13 21383304 21383304 G A XPO4 Nonsense_Mutation p.R471* 0.13 TCGA-IB-7651-01 13 21383952 21383952 G A XPO4 Missense_Mutation p.A443V 0.13 tolerated(0.12) benign(0.358) TCGA-IB-7651-01 13 21549149 21549149 G A LATS2 Nonsense_Mutation p.R1043* 0.15 TCGA-IB-7651-01 13 21562824 21562824 G T LATS2 Silent p.T365T 0.11 TCGA-IB-7651-01 13 21720978 21720978 G A SAP18 Missense_Mutation p.V92I 0.17 tolerated(0.28) benign(0.017) TCGA-IB-7651-01 13 21729846 21729846 G A SKA3 Silent p.S408S 0.11 TCGA-IB-7651-01 13 21732194 21732194 G A SKA3 Missense_Mutation p.S329L 0.10 deleterious(0.03) possibly_damaging(0.894) TCGA-IB-7651-01 13 23904672 23904672 C T SACS Missense_Mutation p.R4448H 0.13 probably_damaging(0.991) TCGA-IB-7651-01 13 23905023 23905023 C T SACS Missense_Mutation p.R4331Q 0.13 probably_damaging(0.978) TCGA-IB-7651-01 13 23905812 23905812 C A SACS Missense_Mutation p.S4068I 0.22 probably_damaging(0.991) TCGA-IB-7651-01 13 23910147 23910147 C A SACS Missense_Mutation p.G2623V 0.17 probably_damaging(1) TCGA-IB-7651-01 13 23910802 23910802 C A SACS Nonsense_Mutation p.E2405* 0.17 TCGA-IB-7651-01 13 23911291 23911291 C T SACS Missense_Mutation p.A2242T 0.18 probably_damaging(0.995) TCGA-IB-7651-01 13 23915088 23915088 C T SACS Missense_Mutation p.R976H 0.17 benign(0.004) TCGA-IB-7651-01 13 23929587 23929587 C A SACS Missense_Mutation p.Q388H 0.14 possibly_damaging(0.677) TCGA-IB-7651-01 13 23929960 23929960 C T SACS Missense_Mutation p.G264D 0.20 probably_damaging(1) TCGA-IB-7651-01 13 23932601 23932601 G A SACS Silent p.Y159Y 0.13 TCGA-IB-7651-01 13 24190110 24190110 C T TNFRSF19 Silent p.C95C 0.13 TCGA-IB-7651-01 13 24200923 24200923 A C TNFRSF19 Missense_Mutation p.E146A 0.12 deleterious(0.02) probably_damaging(0.912) TCGA-IB-7651-01 13 24242173 24242173 C T TNFRSF19 Missense_Mutation p.P264L 0.19 tolerated(0.09) benign(0.001) TCGA-IB-7651-01 13 24243246 24243246 C T TNFRSF19 Nonsense_Mutation p.R419* 0.11 TCGA-IB-7651-01 13 24471055 24471055 C A C1QTNF9B Missense_Mutation p.R24M 0.07 tolerated(0.09) possibly_damaging(0.748) TCGA-IB-7651-01 13 24860906 24860906 C T SPATA13 Nonsense_Mutation p.R829* 0.17 TCGA-IB-7651-01 13 24895592 24895592 G A C1QTNF9 Missense_Mutation p.E230K 0.17 tolerated(0.11) benign(0.007) TCGA-IB-7651-01 13 25008755 25008755 G A PARP4 Silent p.L1508L 0.14 TCGA-IB-7651-01 13 25068788 25068788 G A PARP4 Silent p.L222L 0.24 TCGA-IB-7651-01 13 25264557 25264557 G T ATP12A Nonsense_Mutation p.G210* 0.15 TCGA-IB-7651-01 13 25264578 25264578 G A ATP12A Missense_Mutation p.D217N 0.15 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 13 25268581 25268581 G T ATP12A Splice_Site p.X466_splice 0.15 TCGA-IB-7651-01 13 25281487 25281487 C T ATP12A Silent p.C809C 0.15 TCGA-IB-7651-01 13 25418028 25418028 A C RNF17 Missense_Mutation p.E917A 0.19 tolerated(0.06) possibly_damaging(0.874) TCGA-IB-7651-01 13 25425606 25425606 A C RNF17 Missense_Mutation p.T1073P 0.18 deleterious(0.05) benign(0.348) TCGA-IB-7651-01 13 25457211 25457212 - T CENPJ 3'UTR 0.23 TCGA-IB-7651-01 13 25463468 25463468 T A CENPJ Missense_Mutation p.Y1096F 0.15 tolerated(0.2) benign(0.009) TCGA-IB-7651-01 13 25671076 25671076 C A PABPC3 Missense_Mutation p.A247D 0.19 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 13 25671625 25671625 G A PABPC3 Missense_Mutation p.R430H 0.15 tolerated(0.06) benign(0.033) TCGA-IB-7651-01 13 25671992 25671992 G T PABPC3 Missense_Mutation p.K552N 0.16 deleterious(0.02) benign(0.007) TCGA-IB-7651-01 13 25672226 25672226 T G PABPC3 Silent p.T630T 0.20 TCGA-IB-7651-01 13 25831394 25831394 C A MTMR6 Missense_Mutation p.Q345H 0.21 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 13 25912815 25912815 G A NUPL1 Missense_Mutation p.A526T 0.11 deleterious(0.02) possibly_damaging(0.834) TCGA-IB-7651-01 13 25914343 25914343 C T NUPL1 3'UTR 0.25 TCGA-IB-7651-01 13 26535801 26535801 C T ATP8A2 Missense_Mutation p.A1091V 0.16 tolerated(1) benign(0.024) TCGA-IB-7651-01 13 26788516 26788516 A C RNF6 Missense_Mutation p.D501E 0.17 tolerated(1) benign(0) TCGA-IB-7651-01 13 26828901 26828901 A C CDK8 Missense_Mutation p.K41N 0.14 deleterious(0) possibly_damaging(0.542) TCGA-IB-7651-01 13 26923286 26923286 G A CDK8 Nonsense_Mutation p.W94* 0.16 TCGA-IB-7651-01 13 26978250 26978250 C T CDK8 3'UTR 0.17 TCGA-IB-7651-01 13 27255212 27255212 G A WASF3 Silent p.T246T 0.18 TCGA-IB-7651-01 13 27333552 27333552 C T GPR12 Missense_Mutation p.R138H 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 13 27333952 27333952 G A GPR12 Silent p.L5L 0.17 TCGA-IB-7651-01 13 27643438 27643438 G T USP12 Missense_Mutation p.F365L 0.09 deleterious(0.03) benign(0.434) TCGA-IB-7651-01 13 27645271 27645271 G A USP12 Silent p.G316G 0.08 TCGA-IB-7651-01 13 27829420 27829420 C T RPL21 Silent p.Y57Y 0.21 TCGA-IB-7651-01 13 28009581 28009581 T C GTF3A Silent p.S315S 0.16 TCGA-IB-7651-01 13 28240122 28240122 C A POLR1D 3'UTR 0.09 TCGA-IB-7651-01 13 28498408 28498408 C T PDX1 Missense_Mutation p.A141V 0.19 tolerated(0.74) benign(0.002) TCGA-IB-7651-01 13 28602336 28602336 G T FLT3 Missense_Mutation p.L678M 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 13 28609635 28609635 G A FLT3 Missense_Mutation p.P532S 0.20 tolerated(0.25) benign(0.002) TCGA-IB-7651-01 13 28844994 28844994 G T PAN3 Missense_Mutation p.G650V 0.12 deleterious(0.01) probably_damaging(0.94) TCGA-IB-7651-01 13 28901672 28901672 A C FLT1 Missense_Mutation p.I908S 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 13 28964088 28964088 C T FLT1 Missense_Mutation p.S605N 0.04 tolerated(0.22) benign(0.016) TCGA-IB-7651-01 13 29275610 29275610 T C SLC46A3 Intron 0.17 TCGA-IB-7651-01 13 29287142 29287142 A G SLC46A3 Silent p.T245T 0.19 TCGA-IB-7651-01 13 29287292 29287292 A G SLC46A3 Silent p.G195G 0.20 TCGA-IB-7651-01 13 29599490 29599490 A G MTUS2 Missense_Mutation p.T229A 0.23 deleterious(0.05) benign(0.164) TCGA-IB-7651-01 13 30077420 30077420 G A MTUS2 3'UTR 0.16 TCGA-IB-7651-01 13 30104741 30104741 G A SLC7A1 Missense_Mutation p.S213L 0.18 deleterious(0) possibly_damaging(0.49) TCGA-IB-7651-01 13 30341410 30341410 A C UBL3 Missense_Mutation p.N112K 0.15 tolerated(0.15) benign(0.034) TCGA-IB-7651-01 13 30815139 30815139 C T KATNAL1 Missense_Mutation p.A193T 0.14 tolerated(0.54) benign(0.002) TCGA-IB-7651-01 13 31205600 31205600 G T USPL1 Missense_Mutation p.S286I 0.14 tolerated(0.07) possibly_damaging(0.532) TCGA-IB-7651-01 13 31232400 31232400 A C USPL1 Missense_Mutation p.E729A 0.20 tolerated(0.09) benign(0.311) TCGA-IB-7651-01 13 31232733 31232733 C T USPL1 Missense_Mutation p.A840V 0.15 tolerated(0.34) benign(0.032) TCGA-IB-7651-01 13 31491584 31491584 A G MEDAG Missense_Mutation p.E108G 0.18 deleterious(0.01) benign(0.001) TCGA-IB-7651-01 13 31495263 31495263 G T MEDAG Missense_Mutation p.Q167H 0.17 deleterious(0.01) benign(0.124) TCGA-IB-7651-01 13 31498673 31498673 G A MEDAG 3'UTR 0.18 TCGA-IB-7651-01 13 31724241 31724241 A T HSPH1 Missense_Mutation p.H329Q 0.05 tolerated(0.25) benign(0) TCGA-IB-7651-01 13 32313705 32313705 T C RXFP2 5'UTR 0.16 TCGA-IB-7651-01 13 32376620 32376620 C A RXFP2 3'UTR 0.19 TCGA-IB-7651-01 13 32527006 32527006 C A EEF1DP3 RNA 0.18 TCGA-IB-7651-01 13 32527069 32527069 C T EEF1DP3 RNA 0.16 TCGA-IB-7651-01 13 32527230 32527230 C T EEF1DP3 RNA 0.10 TCGA-IB-7651-01 13 32722003 32722003 T G FRY Silent p.L437L 0.16 TCGA-IB-7651-01 13 32745307 32745307 C T FRY Missense_Mutation p.S684L 0.13 deleterious(0.02) benign(0.067) TCGA-IB-7651-01 13 32747543 32747543 C T FRY Nonsense_Mutation p.R731* 0.17 TCGA-IB-7651-01 13 32768363 32768363 C T FRY Silent p.D1225D 0.15 TCGA-IB-7651-01 13 32783857 32783857 C A FRY Missense_Mutation p.L1471I 0.18 deleterious(0) probably_damaging(0.915) TCGA-IB-7651-01 13 32906448 32906448 G A BRCA2 Missense_Mutation p.S278N 0.18 tolerated(0.14) benign(0.023) TCGA-IB-7651-01 13 32911541 32911541 A T BRCA2 Missense_Mutation p.I1017F 0.19 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 13 32912529 32912529 C A BRCA2 Missense_Mutation p.T1346N 0.22 tolerated(0.05) probably_damaging(0.949) TCGA-IB-7651-01 13 32913417 32913417 A C BRCA2 Missense_Mutation p.N1642T 0.14 tolerated(0.1) benign(0.044) TCGA-IB-7651-01 13 32913836 32913837 - A BRCA2 Frame_Shift_Ins p.N1784Kfs*3 0.19 TCGA-IB-7651-01 13 32914727 32914727 G A BRCA2 Missense_Mutation p.V2079M 0.14 tolerated(1) benign(0.001) TCGA-IB-7651-01 13 32953972 32953972 T C BRCA2 Silent p.T3013T 0.17 TCGA-IB-7651-01 13 32978376 32978376 C T N4BP2L1 Intron 0.11 TCGA-IB-7651-01 13 33017510 33017510 C T N4BP2L2 Nonsense_Mutation p.W388* 0.12 TCGA-IB-7651-01 13 33281111 33281111 G T PDS5B Missense_Mutation p.A633S 0.09 tolerated(0.27) benign(0.054) TCGA-IB-7651-01 13 33349198 33349198 T G PDS5B 3'UTR 0.11 TCGA-IB-7651-01 13 33591381 33591381 C T KL Missense_Mutation p.A268V 0.17 deleterious(0.02) possibly_damaging(0.615) TCGA-IB-7651-01 13 33635273 33635273 C T KL Missense_Mutation p.T686M 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 13 35615281 35615281 C A NBEA Missense_Mutation p.A169D 0.07 tolerated(0.39) benign(0.028) TCGA-IB-7651-01 13 35630181 35630181 G A NBEA Missense_Mutation p.R336Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 13 36049526 36049526 G A MAB21L1 Silent p.C250C 0.13 TCGA-IB-7651-01 13 36049967 36049967 G A MAB21L1 Silent p.S103S 0.16 TCGA-IB-7651-01 13 36050059 36050059 C T MAB21L1 Missense_Mutation p.E73K 0.21 deleterious(0.01) possibly_damaging(0.655) TCGA-IB-7651-01 13 36050193 36050193 G A MAB21L1 Missense_Mutation p.A28V 0.21 tolerated(0.52) benign(0.006) TCGA-IB-7651-01 13 36050304 36050304 G A MAB21L1 5'UTR 0.24 TCGA-IB-7651-01 13 36220438 36220438 C T NBEA Nonsense_Mutation p.Q2554* 0.08 TCGA-IB-7651-01 13 36367610 36367610 C T DCLK1 Missense_Mutation p.G651S 0.19 tolerated(0.2) probably_damaging(0.931) TCGA-IB-7651-01 13 36424831 36424831 C T DCLK1 Intron 0.13 TCGA-IB-7651-01 13 36424911 36424911 G A DCLK1 Intron 0.14 TCGA-IB-7651-01 13 36686021 36686021 C T DCLK1 Silent p.T236T 0.08 TCGA-IB-7651-01 13 36686204 36686204 C T DCLK1 Silent p.E175E 0.14 TCGA-IB-7651-01 13 36700099 36700099 A G DCLK1 Missense_Mutation p.V59A 0.20 tolerated(0.18) unknown(0) TCGA-IB-7651-01 13 36878365 36878365 A C SPG20 3'UTR 0.12 TCGA-IB-7651-01 13 36878678 36878678 T C SPG20 Missense_Mutation p.I609V 0.13 tolerated(0.09) benign(0.012) TCGA-IB-7651-01 13 36878745 36878745 A G SPG20 Silent p.A586A 0.20 TCGA-IB-7651-01 13 36900795 36900795 A G SPG20 Missense_Mutation p.I402T 0.14 tolerated(0.62) benign(0.001) TCGA-IB-7651-01 13 36905734 36905734 C A SPG20 Splice_Site p.X271_splice 0.20 TCGA-IB-7651-01 13 37012230 37012230 C A CCNA1 Missense_Mutation p.L191I 0.15 tolerated(0.64) benign(0.03) TCGA-IB-7651-01 13 37014291 37014291 G A CCNA1 Missense_Mutation p.V357M 0.13 deleterious(0.02) probably_damaging(0.996) TCGA-IB-7651-01 13 37447026 37447026 G A SMAD9 Missense_Mutation p.H147Y 0.18 tolerated(0.21) benign(0.012) TCGA-IB-7651-01 13 37453838 37453838 G T SMAD9 5'UTR 0.17 TCGA-IB-7651-01 13 37573380 37573380 G A ALG5 Missense_Mutation p.L20F 0.15 tolerated(0.58) benign(0.184) TCGA-IB-7651-01 13 37582916 37582916 G T EXOSC8 Missense_Mutation p.G220V 0.15 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 13 37678964 37678964 T C CSNK1A1L Missense_Mutation p.M144V 0.17 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-IB-7651-01 13 37679320 37679320 G A CSNK1A1L Missense_Mutation p.S25F 0.12 deleterious_low_confidence(0.01) probably_damaging(0.917) TCGA-IB-7651-01 13 37679424 37679424 G T CSNK1A1L 5'UTR 0.11 TCGA-IB-7651-01 13 38154704 38154704 C T POSTN Missense_Mutation p.R508H 0.08 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 13 38160387 38160387 C T POSTN Missense_Mutation p.A262T 0.17 tolerated(0.78) benign(0.002) TCGA-IB-7651-01 13 38266283 38266283 A C TRPC4 Missense_Mutation p.F363V 0.15 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 13 38266348 38266348 G T TRPC4 Missense_Mutation p.P341H 0.19 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 13 38924138 38924138 C T UFM1 Missense_Mutation p.S2L 0.20 deleterious_low_confidence(0.04) benign(0.006) TCGA-IB-7651-01 13 38924356 38924356 C T UFM1 Intron 0.11 TCGA-IB-7651-01 13 39262299 39262299 G A FREM2 Missense_Mutation p.R273H 0.08 tolerated(0.1) benign(0.002) TCGA-IB-7651-01 13 39262336 39262336 G T FREM2 Missense_Mutation p.E285D 0.17 deleterious(0.02) possibly_damaging(0.603) TCGA-IB-7651-01 13 39262809 39262809 G A FREM2 Missense_Mutation p.R443Q 0.18 tolerated(0.09) benign(0.351) TCGA-IB-7651-01 13 39263085 39263085 G A FREM2 Missense_Mutation p.R535H 0.14 deleterious(0.03) probably_damaging(0.988) TCGA-IB-7651-01 13 39263542 39263542 G T FREM2 Missense_Mutation p.Q687H 0.15 tolerated(1) benign(0.004) TCGA-IB-7651-01 13 39263556 39263556 G A FREM2 Missense_Mutation p.R692H 0.13 deleterious(0.02) benign(0.033) TCGA-IB-7651-01 13 39264040 39264040 C T FREM2 Silent p.H853H 0.19 TCGA-IB-7651-01 13 39264502 39264502 G A FREM2 Silent p.R1007R 0.13 TCGA-IB-7651-01 13 39264866 39264866 G A FREM2 Missense_Mutation p.A1129T 0.09 tolerated(0.08) benign(0.038) TCGA-IB-7651-01 13 39265074 39265074 T G FREM2 Missense_Mutation p.F1198C 0.19 deleterious(0) probably_damaging(0.94) TCGA-IB-7651-01 13 39357242 39357242 G A FREM2 Missense_Mutation p.V1893I 0.20 tolerated(1) benign(0.002) TCGA-IB-7651-01 13 39448647 39448647 C T FREM2 Silent p.I2735I 0.14 TCGA-IB-7651-01 13 39450468 39450468 C T FREM2 Silent p.T2831T 0.18 TCGA-IB-7651-01 13 39541021 39541021 G A STOML3 Silent p.L273L 0.16 TCGA-IB-7651-01 13 39587359 39587359 G T PROSER1 Missense_Mutation p.S677Y 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.66) TCGA-IB-7651-01 13 39621894 39621894 G T NHLRC3 Missense_Mutation p.S292I 0.16 tolerated(0.2) benign(0.11) TCGA-IB-7651-01 13 39917889 39917889 T C LHFP 3'UTR 0.09 TCGA-IB-7651-01 13 41340970 41340970 T C MRPS31 Missense_Mutation p.T118A 0.17 tolerated(0.1) benign(0.27) TCGA-IB-7651-01 13 41791362 41791362 T A MTRF1 Missense_Mutation p.E409D 0.18 tolerated(0.14) benign(0.016) TCGA-IB-7651-01 13 41899884 41899884 G T NAA16 Missense_Mutation p.Q196H 0.10 deleterious(0.01) probably_damaging(0.995) TCGA-IB-7651-01 13 41949760 41949760 C A NAA16 3'UTR 0.06 TCGA-IB-7651-01 13 42149881 42149881 G T VWA8 Missense_Mutation p.L1789M 0.16 tolerated(0.05) possibly_damaging(0.868) TCGA-IB-7651-01 13 42803436 42803436 G A DGKH 3'UTR 0.11 TCGA-IB-7651-01 13 42876137 42876137 G A AKAP11 Silent p.V1085V 0.20 TCGA-IB-7651-01 13 43148613 43148613 C T TNFSF11 Silent p.G58G 0.19 TCGA-IB-7651-01 13 43500515 43500515 C T EPSTI1 Missense_Mutation p.S205N 0.16 tolerated(0.21) benign(0.117) TCGA-IB-7651-01 13 43538235 43538235 T G EPSTI1 Missense_Mutation p.Q124H 0.16 deleterious(0.02) probably_damaging(1) TCGA-IB-7651-01 13 43935567 43935567 A C ENOX1 Missense_Mutation p.F77C 0.15 deleterious(0) probably_damaging(0.921) TCGA-IB-7651-01 13 43986136 43986136 C T ENOX1 Missense_Mutation p.V42M 0.20 tolerated(0.89) possibly_damaging(0.461) TCGA-IB-7651-01 13 43986165 43986165 G A ENOX1 Missense_Mutation p.A32V 0.14 tolerated_low_confidence(0.11) benign(0.017) TCGA-IB-7651-01 13 44464409 44464409 A G LACC1 Nonstop_Mutation p.*431Wext*3 0.19 TCGA-IB-7651-01 13 45149075 45149075 C T TSC22D1 Missense_Mutation p.S379N 0.19 tolerated(1) benign(0) TCGA-IB-7651-01 13 45976427 45976427 T C SLC25A30 Missense_Mutation p.T158A 0.09 tolerated(0.45) benign(0.007) TCGA-IB-7651-01 13 45976437 45976437 C A SLC25A30 Missense_Mutation p.Q154H 0.13 tolerated(0.06) benign(0.03) TCGA-IB-7651-01 13 46067616 46067616 A C COG3 Missense_Mutation p.N441T 0.18 deleterious(0.03) possibly_damaging(0.786) TCGA-IB-7651-01 13 46276968 46276968 C T SPERT Missense_Mutation p.P45L 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-IB-7651-01 13 46287329 46287329 G A SPERT Missense_Mutation p.E57K 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.802) TCGA-IB-7651-01 13 46537780 46537780 T C ZC3H13 3'UTR 0.22 TCGA-IB-7651-01 13 46563006 46563006 G A ZC3H13 Missense_Mutation p.H391Y 0.21 unknown(0) TCGA-IB-7651-01 13 46701581 46701581 C A LCP1 3'UTR 0.22 TCGA-IB-7651-01 13 46704966 46704966 C T LCP1 Silent p.E578E 0.17 TCGA-IB-7651-01 13 46716542 46716542 C T LCP1 Missense_Mutation p.A463T 0.20 deleterious(0) possibly_damaging(0.85) TCGA-IB-7651-01 13 46730615 46730615 G A LCP1 Missense_Mutation p.T150M 0.14 tolerated(0.11) benign(0.055) TCGA-IB-7651-01 13 46733793 46733793 G A LCP1 Missense_Mutation p.A2V 0.17 deleterious_low_confidence(0.01) benign(0.184) TCGA-IB-7651-01 13 46946460 46946460 C T KIAA0226L Missense_Mutation p.A51T 0.18 deleterious(0) probably_damaging(0.935) TCGA-IB-7651-01 13 47011872 47011872 A G PPP1R2P4 RNA 0.15 TCGA-IB-7651-01 13 47255891 47255891 G A LRCH1 Missense_Mutation p.E199K 0.16 deleterious(0) possibly_damaging(0.462) TCGA-IB-7651-01 13 47262061 47262061 C T LRCH1 Silent p.S299S 0.15 TCGA-IB-7651-01 13 47269052 47269052 C T LRCH1 Missense_Mutation p.P382L 0.17 tolerated(0.32) benign(0.019) TCGA-IB-7651-01 13 47297373 47297373 A C LRCH1 Silent p.R593R 0.11 TCGA-IB-7651-01 13 47316005 47316005 G A LRCH1 3'UTR 0.14 TCGA-IB-7651-01 13 47345570 47345570 G T ESD Missense_Mutation p.A277D 0.11 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 13 48528619 48528619 C A SUCLA2 Missense_Mutation p.Q292H 0.21 deleterious(0) benign(0.009) TCGA-IB-7651-01 13 48832293 48832293 A C ITM2B Missense_Mutation p.D162A 0.14 deleterious(0.04) possibly_damaging(0.795) TCGA-IB-7651-01 13 48955427 48955427 C A RB1 Missense_Mutation p.P515T 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 13 48986181 48986181 G T LPAR6 Missense_Mutation p.L127I 0.07 tolerated(0.68) benign(0.012) TCGA-IB-7651-01 13 49054158 49054158 A G RB1 Missense_Mutation p.K913R 0.18 deleterious_low_confidence(0.04) possibly_damaging(0.794) TCGA-IB-7651-01 13 49281308 49281308 T C CYSLTR2 Missense_Mutation p.Y119H 0.13 deleterious(0.02) possibly_damaging(0.712) TCGA-IB-7651-01 13 49741418 49741418 C A FNDC3A Missense_Mutation p.P339Q 0.09 deleterious(0) possibly_damaging(0.878) TCGA-IB-7651-01 13 49772216 49772216 C T FNDC3A Silent p.S863S 0.15 TCGA-IB-7651-01 13 49796490 49796490 G A MLNR Missense_Mutation p.A406T 0.15 tolerated(0.3) benign(0.003) TCGA-IB-7651-01 13 49841720 49841720 A C CDADC1 Missense_Mutation p.K175N 0.11 tolerated(0.07) probably_damaging(0.943) TCGA-IB-7651-01 13 49852631 49852631 C T CDADC1 Missense_Mutation p.A399V 0.16 deleterious(0) probably_damaging(0.939) TCGA-IB-7651-01 13 49866007 49866007 T C CDADC1 3'UTR 0.24 TCGA-IB-7651-01 13 50080886 50080886 T G PHF11 Missense_Mutation p.N70K 0.15 deleterious(0.01) possibly_damaging(0.461) TCGA-IB-7651-01 13 50125569 50125569 T C RCBTB1 Silent p.T249T 0.20 TCGA-IB-7651-01 13 50141409 50141409 C T RCBTB1 Missense_Mutation p.D3N 0.12 deleterious(0) possibly_damaging(0.486) TCGA-IB-7651-01 13 50235155 50235155 T G EBPL Missense_Mutation p.E190D 0.14 tolerated(0.29) benign(0.063) TCGA-IB-7651-01 13 50237284 50237284 T C EBPL Missense_Mutation p.T97A 0.24 deleterious(0.02) benign(0.41) TCGA-IB-7651-01 13 50489247 50489247 C T SPRYD7 Silent p.T181T 0.14 TCGA-IB-7651-01 13 51522132 51522132 T C RNASEH2B Missense_Mutation p.I209T 0.21 tolerated(0.14) benign(0.06) TCGA-IB-7651-01 13 51935903 51935903 A C SERPINE3 Intron 0.10 TCGA-IB-7651-01 13 52234790 52234790 G A WDFY2 Missense_Mutation p.A66T 0.08 tolerated(0.41) benign(0) TCGA-IB-7651-01 13 52439824 52439824 G T CCDC70 Nonsense_Mutation p.E104* 0.09 TCGA-IB-7651-01 13 52524499 52524499 G A ATP7B Silent p.G828G 0.16 TCGA-IB-7651-01 13 52593269 52593269 C A ALG11 Missense_Mutation p.L89M 0.16 deleterious(0.02) probably_damaging(0.994) TCGA-IB-7651-01 13 52598190 52598190 C T ALG11 Silent p.N108N 0.18 TCGA-IB-7651-01 13 52603460 52603460 C T UTP14C Missense_Mutation p.L174F 0.16 tolerated(0.4) benign(0.03) TCGA-IB-7651-01 13 52603992 52603992 T C UTP14C Missense_Mutation p.V351A 0.20 tolerated(0.37) benign(0.078) TCGA-IB-7651-01 13 52657437 52657437 G A NEK5 Missense_Mutation p.P511S 0.15 tolerated(0.13) benign(0.007) TCGA-IB-7651-01 13 52684547 52684547 C T NEK5 Splice_Site p.X133_splice 0.09 TCGA-IB-7651-01 13 52744196 52744196 G A MRPS31P5 RNA 0.14 TCGA-IB-7651-01 13 52863976 52863976 G A RP11-248G5.8 RNA 0.13 TCGA-IB-7651-01 13 52952067 52952067 C T THSD1 Missense_Mutation p.A680T 0.18 tolerated(0.65) benign(0.005) TCGA-IB-7651-01 13 52952422 52952422 G A THSD1 Silent p.D561D 0.09 TCGA-IB-7651-01 13 52991255 52991255 G A VPS36 Silent p.G309G 0.17 TCGA-IB-7651-01 13 53007820 53007820 C A VPS36 Nonsense_Mutation p.E169* 0.17 TCGA-IB-7651-01 13 53029624 53029624 C T CKAP2 5'UTR 0.19 TCGA-IB-7651-01 13 53217583 53217583 G T HNRNPA1L2 Missense_Mutation p.R319I 0.14 deleterious_low_confidence(0) unknown(0) TCGA-IB-7651-01 13 53282672 53282672 T C LECT1 Missense_Mutation p.H263R 0.16 deleterious(0.02) benign(0.012) TCGA-IB-7651-01 13 53282814 53282814 C T LECT1 Missense_Mutation p.V216M 0.12 tolerated(0.27) benign(0.045) TCGA-IB-7651-01 13 53419069 53419069 C A PCDH8 Splice_Site p.X947_splice 0.06 TCGA-IB-7651-01 13 53419603 53419603 G A PCDH8 Silent p.S932S 0.05 TCGA-IB-7651-01 13 53420462 53420462 C T PCDH8 Missense_Mutation p.A704T 0.17 deleterious(0.03) possibly_damaging(0.668) TCGA-IB-7651-01 13 53422137 53422137 G A PCDH8 Silent p.S145S 0.18 TCGA-IB-7651-01 13 53422634 53422634 G A PCDH8 5'UTR 0.15 TCGA-IB-7651-01 13 53624940 53624940 T C OLFM4 3'UTR 0.19 TCGA-IB-7651-01 13 58207971 58207971 G A PCDH17 Missense_Mutation p.D431N 0.20 deleterious(0.04) probably_damaging(1) TCGA-IB-7651-01 13 60348321 60348321 A C DIAPH3 Splice_Site p.X1107_splice 0.13 TCGA-IB-7651-01 13 60686224 60686224 C A DIAPH3 Missense_Mutation p.A104S 0.15 tolerated(0.84) benign(0) TCGA-IB-7651-01 13 61986877 61986877 G A PCDH20 Missense_Mutation p.A452V 0.18 deleterious(0.04) possibly_damaging(0.84) TCGA-IB-7651-01 13 61987229 61987229 C A PCDH20 Missense_Mutation p.V335L 0.16 tolerated(0.18) benign(0.013) TCGA-IB-7651-01 13 64321008 64321008 C A AL445989.1 Silent p.G25G 0.19 TCGA-IB-7651-01 13 66879090 66879090 A G PCDH9 Silent p.G1137G 0.15 TCGA-IB-7651-01 13 67801996 67801996 C T PCDH9 Missense_Mutation p.V193M 0.19 deleterious(0.05) probably_damaging(0.964) TCGA-IB-7651-01 13 70293595 70293595 C T KLHL1 Missense_Mutation p.G641R 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 13 70413134 70413134 G T KLHL1 Missense_Mutation p.A463D 0.13 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 13 70681635 70681635 C A KLHL1 Missense_Mutation p.S66I 0.18 tolerated_low_confidence(0.19) benign(0.001) TCGA-IB-7651-01 13 70681841 70681841 A G KLHL1 5'UTR 0.12 TCGA-IB-7651-01 13 72049848 72049848 C A DACH1 Missense_Mutation p.R670S 0.19 benign(0.444) TCGA-IB-7651-01 13 73636671 73636671 C T KLF5 Missense_Mutation p.P312S 0.13 deleterious(0) probably_damaging(0.968) TCGA-IB-7651-01 13 74420163 74420163 G A KLF12 Silent p.G157G 0.15 TCGA-IB-7651-01 13 75876437 75876437 G T TBC1D4 Silent p.S951S 0.14 TCGA-IB-7651-01 13 76100571 76100571 G A COMMD6 3'Flank 0.08 TCGA-IB-7651-01 13 76104365 76104365 C T COMMD6 Missense_Mutation p.S31N 0.04 deleterious(0) benign(0.383) TCGA-IB-7651-01 13 76111727 76111727 C T COMMD6 Intron 0.18 TCGA-IB-7651-01 13 76369557 76369557 G A LMO7 5'UTR 0.14 TCGA-IB-7651-01 13 76379826 76379826 G A LMO7 Missense_Mutation p.E143K 0.16 deleterious(0) probably_damaging(0.949) TCGA-IB-7651-01 13 76395671 76395671 T C LMO7 Silent p.L623L 0.05 TCGA-IB-7651-01 13 76429476 76429476 G A LMO7 Intron 0.18 TCGA-IB-7651-01 13 77459400 77459400 C T KCTD12 Missense_Mutation p.S295N 0.21 tolerated(1) benign(0.007) TCGA-IB-7651-01 13 77460047 77460047 G A KCTD12 Silent p.R79R 0.19 TCGA-IB-7651-01 13 77570262 77570262 G T CLN5 Nonsense_Mutation p.G238* 0.04 TCGA-IB-7651-01 13 77595939 77595939 C A FBXL3 Missense_Mutation p.E19D 0.18 tolerated_low_confidence(0.55) benign(0.001) TCGA-IB-7651-01 13 77625140 77625140 C T MYCBP2 Missense_Mutation p.C4600Y 0.11 probably_damaging(0.987) TCGA-IB-7651-01 13 77632491 77632491 G A MYCBP2 Silent p.C4359C 0.15 TCGA-IB-7651-01 13 77635368 77635368 G T MYCBP2 Missense_Mutation p.F4286L 0.15 probably_damaging(0.937) TCGA-IB-7651-01 13 77692486 77692486 G A MYCBP2 Intron 0.14 TCGA-IB-7651-01 13 77699592 77699592 A G MYCBP2 Silent p.S2594S 0.18 TCGA-IB-7651-01 13 77736067 77736067 C A MYCBP2 Nonsense_Mutation p.E2153* 0.17 TCGA-IB-7651-01 13 77742684 77742684 G A MYCBP2 Missense_Mutation p.S1960L 0.14 possibly_damaging(0.895) TCGA-IB-7651-01 13 77779470 77779470 C T MYCBP2 Missense_Mutation p.R1217H 0.17 probably_damaging(0.998) TCGA-IB-7651-01 13 78477491 78477491 G A EDNRB Nonsense_Mutation p.R291* 0.15 TCGA-IB-7651-01 13 78492556 78492556 C A EDNRB Missense_Mutation p.K141N 0.17 tolerated(0.15) benign(0.366) TCGA-IB-7651-01 13 79175532 79175532 C T POU4F1 3'UTR 0.14 TCGA-IB-7651-01 13 79175757 79175757 G A POU4F1 Silent p.N351N 0.19 TCGA-IB-7651-01 13 79190301 79190301 G T RNF219 Missense_Mutation p.A532D 0.13 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 13 79190435 79190435 C T RNF219 Silent p.T487T 0.15 TCGA-IB-7651-01 13 79191336 79191336 G T RNF219 Intron 0.09 TCGA-IB-7651-01 13 79952975 79952975 T C RBM26 Missense_Mutation p.K47E 0.22 tolerated(0.13) unknown(0) TCGA-IB-7651-01 13 84453725 84453725 C T SLITRK1 Missense_Mutation p.V640M 0.18 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 13 84454641 84454641 G T SLITRK1 Silent p.P334P 0.14 TCGA-IB-7651-01 13 84455008 84455008 T G SLITRK1 Missense_Mutation p.N212T 0.08 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 13 88328479 88328479 C A SLITRK5 Missense_Mutation p.S279Y 0.18 tolerated(0.06) possibly_damaging(0.702) TCGA-IB-7651-01 13 88329152 88329152 G A SLITRK5 Silent p.P503P 0.17 TCGA-IB-7651-01 13 88329162 88329162 C A SLITRK5 Missense_Mutation p.L507I 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 13 88329270 88329270 T G SLITRK5 Missense_Mutation p.L543V 0.19 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 13 90883434 90883434 C T MIR622 5'Flank 0.12 TCGA-IB-7651-01 13 92101141 92101141 A C GPC5 Missense_Mutation p.K97T 0.18 deleterious(0.01) possibly_damaging(0.654) TCGA-IB-7651-01 13 93518645 93518645 A T GPC5 Missense_Mutation p.T558S 0.13 tolerated_low_confidence(0.22) benign(0.042) TCGA-IB-7651-01 13 93879588 93879588 G - GPC6 5'UTR 0.12 TCGA-IB-7651-01 13 95092163 95092163 C A DCT Nonsense_Mutation p.E550* 0.15 TCGA-IB-7651-01 13 95118886 95118886 C A DCT Missense_Mutation p.D208Y 0.16 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 13 95131483 95131483 C T DCT Silent p.L9L 0.17 TCGA-IB-7651-01 13 95131562 95131562 G A DCT 5'UTR 0.16 TCGA-IB-7651-01 13 95735417 95735417 T A ABCC4 Missense_Mutation p.D888V 0.20 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 13 95813533 95813533 C T ABCC4 Missense_Mutation p.V789I 0.14 tolerated(0.47) benign(0.013) TCGA-IB-7651-01 13 95886992 95886992 A G ABCC4 Missense_Mutation p.Y135H 0.18 deleterious(0.01) possibly_damaging(0.62) TCGA-IB-7651-01 13 96285517 96285517 C A DZIP1 Missense_Mutation p.R219L 0.08 deleterious(0) possibly_damaging(0.866) TCGA-IB-7651-01 13 96293679 96293679 C T DZIP1 Missense_Mutation p.G156D 0.15 tolerated(0.21) benign(0.148) TCGA-IB-7651-01 13 96409944 96409944 A C DNAJC3 Missense_Mutation p.Q147P 0.19 deleterious(0.01) possibly_damaging(0.891) TCGA-IB-7651-01 13 96443261 96443261 A G DNAJC3 Missense_Mutation p.R498G 0.08 tolerated(0.24) benign(0.019) TCGA-IB-7651-01 13 96453997 96453997 G A UGGT2 3'UTR 0.14 TCGA-IB-7651-01 13 97928576 97928576 C T MBNL2 Silent p.R29R 0.15 TCGA-IB-7651-01 13 98043610 98043610 A G MBNL2 3'UTR 0.13 TCGA-IB-7651-01 13 98086853 98086853 G A RAP2A Silent p.E43E 0.17 TCGA-IB-7651-01 13 98828993 98828993 G A RNF113B Silent p.N166N 0.19 TCGA-IB-7651-01 13 98829110 98829110 G A RNF113B Silent p.I127I 0.15 TCGA-IB-7651-01 13 99047599 99047599 C A FARP1 Missense_Mutation p.P428H 0.09 tolerated(0.09) benign(0.002) TCGA-IB-7651-01 13 99061637 99061637 C T FARP1 Missense_Mutation p.S487L 0.23 deleterious(0.03) benign(0.005) TCGA-IB-7651-01 13 99099020 99099020 T C FARP1 Missense_Mutation p.F1002S 0.17 deleterious(0) probably_damaging(0.966) TCGA-IB-7651-01 13 99515346 99515346 A C DOCK9 Missense_Mutation p.F1169C 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-IB-7651-01 13 99947758 99947758 G T GPR183 Silent p.I214I 0.06 TCGA-IB-7651-01 14 100119107 100119107 G A HHIPL1 Missense_Mutation p.V268I 0.23 tolerated(0.48) possibly_damaging(0.573) TCGA-IB-7651-01 14 100119188 100119188 G A HHIPL1 Missense_Mutation p.V295M 0.24 tolerated(0.07) probably_damaging(0.966) TCGA-IB-7651-01 14 100129317 100129317 A C HHIPL1 Missense_Mutation p.N536T 0.14 tolerated(0.34) benign(0.304) TCGA-IB-7651-01 14 100135184 100135184 C T HHIPL1 Intron 0.18 TCGA-IB-7651-01 14 100158175 100158175 G A CYP46A1 Missense_Mutation p.V87I 0.19 tolerated(0.27) benign(0.008) TCGA-IB-7651-01 14 100187648 100187648 G A CYP46A1 Silent p.Q351Q 0.17 TCGA-IB-7651-01 14 100367375 100367375 C A EML1 Missense_Mutation p.S355Y 0.18 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 14 100404186 100404186 G A EML1 Missense_Mutation p.V729M 0.16 tolerated(0.25) possibly_damaging(0.564) TCGA-IB-7651-01 14 100405613 100405613 C T EML1 Silent p.G776G 0.20 TCGA-IB-7651-01 14 100705717 100705717 G T YY1 Nonsense_Mutation p.E46* 0.16 TCGA-IB-7651-01 14 100759254 100759254 A G SLC25A29 Missense_Mutation p.L93P 0.15 tolerated(0.07) possibly_damaging(0.637) TCGA-IB-7651-01 14 100795904 100795904 C A SLC25A47 Nonsense_Mutation p.C283* 0.16 TCGA-IB-7651-01 14 100813093 100813093 G A WARS Silent p.S272S 0.18 TCGA-IB-7651-01 14 100826997 100826997 G A WARS Missense_Mutation p.R106W 0.20 deleterious(0) possibly_damaging(0.552) TCGA-IB-7651-01 14 100828156 100828156 C A WARS Missense_Mutation p.A68S 0.19 tolerated(0.16) benign(0.005) TCGA-IB-7651-01 14 100847746 100847746 G A WDR25 Missense_Mutation p.S162N 0.18 tolerated(0.34) benign(0.006) TCGA-IB-7651-01 14 100847801 100847801 A G WDR25 Silent p.R180R 0.21 TCGA-IB-7651-01 14 101200802 101200802 G T DLK1 Missense_Mutation p.G241C 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 14 101201350 101201350 G A DLK1 3'UTR 0.14 TCGA-IB-7651-01 14 101491378 101491378 G A MIR380 RNA 0.20 TCGA-IB-7651-01 14 101506578 101506578 C T MIR654 RNA 0.15 TCGA-IB-7651-01 14 101510584 101510584 C T MIR1185-2 RNA 0.11 TCGA-IB-7651-01 14 101518850 101518850 G A MIR487A RNA 0.16 TCGA-IB-7651-01 14 101526926 101526926 G A MIR496 RNA 0.23 TCGA-IB-7651-01 14 101531679 101531679 C T MIR409 RNA 0.19 TCGA-IB-7651-01 14 101531947 101531947 C T MIR369 RNA 0.18 TCGA-IB-7651-01 14 101533122 101533122 C T MIR656 RNA 0.18 TCGA-IB-7651-01 14 102026671 102026671 C A DIO3 5'Flank 0.09 TCGA-IB-7651-01 14 102028036 102028036 G A DIO3 Missense_Mutation p.R68H 0.13 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 14 102028103 102028103 C T DIO3 Silent p.G90G 0.14 TCGA-IB-7651-01 14 102028265 102028265 C T DIO3 Silent p.D144D 0.18 TCGA-IB-7651-01 14 102368104 102368104 G T PPP2R5C Nonsense_Mutation p.E332* 0.19 TCGA-IB-7651-01 14 102446777 102446777 C T DYNC1H1 Missense_Mutation p.A284V 0.11 probably_damaging(0.949) TCGA-IB-7651-01 14 102453024 102453024 C T DYNC1H1 Missense_Mutation p.A821V 0.20 benign(0.017) TCGA-IB-7651-01 14 102467348 102467348 C T DYNC1H1 Nonsense_Mutation p.R1378* 0.18 TCGA-IB-7651-01 14 102472334 102472334 C A DYNC1H1 Missense_Mutation p.P1848H 0.09 benign(0.014) TCGA-IB-7651-01 14 102482234 102482234 G A DYNC1H1 Silent p.T2428T 0.21 TCGA-IB-7651-01 14 102493837 102493837 T C DYNC1H1 Missense_Mutation p.S3002P 0.17 benign(0.25) TCGA-IB-7651-01 14 102493846 102493846 C A DYNC1H1 Missense_Mutation p.L3005M 0.17 probably_damaging(0.996) TCGA-IB-7651-01 14 102505518 102505518 C A DYNC1H1 Missense_Mutation p.T3796N 0.16 benign(0.004) TCGA-IB-7651-01 14 102510214 102510214 T C DYNC1H1 Silent p.S4172S 0.13 TCGA-IB-7651-01 14 102514985 102514985 C T DYNC1H1 Silent p.L4451L 0.17 TCGA-IB-7651-01 14 102516924 102516924 T C DYNC1H1 3'UTR 0.10 TCGA-IB-7651-01 14 102548126 102548126 T C HSP90AA1 Missense_Mutation p.T830A 0.20 tolerated_low_confidence(0.8) unknown(0) TCGA-IB-7651-01 14 102549964 102549964 C T HSP90AA1 Missense_Mutation p.A591T 0.13 tolerated_low_confidence(0.1) unknown(0) TCGA-IB-7651-01 14 102695660 102695660 C T MOK Missense_Mutation p.R409H 0.19 tolerated(1) benign(0.002) TCGA-IB-7651-01 14 102792469 102792469 G A ZNF839 Missense_Mutation p.A146T 0.18 tolerated(1) benign(0.001) TCGA-IB-7651-01 14 102822114 102822114 C T CINP Silent p.L114L 0.18 TCGA-IB-7651-01 14 102974022 102974022 C T ANKRD9 Missense_Mutation p.A69T 0.21 tolerated(0.74) benign(0.003) TCGA-IB-7651-01 14 103174849 103174849 G A RCOR1 Nonsense_Mutation p.W236* 0.18 TCGA-IB-7651-01 14 103444469 103444469 G A CDC42BPB Missense_Mutation p.T405M 0.16 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 14 103566837 103566837 G A EXOC3L4 Missense_Mutation p.G94D 0.24 deleterious(0.01) possibly_damaging(0.629) TCGA-IB-7651-01 14 103597432 103597432 C T TNFAIP2 Silent p.L415L 0.18 TCGA-IB-7651-01 14 103804290 103804290 C T EIF5 Intron 0.14 TCGA-IB-7651-01 14 103805668 103805668 C T EIF5 Nonsense_Mutation p.R302* 0.15 TCGA-IB-7651-01 14 103958353 103958353 C A MARK3 Missense_Mutation p.T609N 0.19 deleterious(0) possibly_damaging(0.493) TCGA-IB-7651-01 14 103969356 103969356 C T MARK3 Missense_Mutation p.A685V 0.18 tolerated(0.06) probably_damaging(0.995) TCGA-IB-7651-01 14 103969447 103969447 G T MARK3 Missense_Mutation p.M715I 0.20 tolerated(0.19) benign(0.248) TCGA-IB-7651-01 14 103988793 103988793 C T CKB Missense_Mutation p.R13H 0.19 tolerated(0.29) benign(0) TCGA-IB-7651-01 14 103996563 103996563 G A TRMT61A Missense_Mutation p.R83H 0.17 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 14 104026472 104026472 T C BAG5 Missense_Mutation p.T385A 0.22 tolerated(0.07) possibly_damaging(0.907) TCGA-IB-7651-01 14 104143826 104143826 C T KLC1 Missense_Mutation p.T485M 0.16 deleterious(0.02) probably_damaging(0.972) TCGA-IB-7651-01 14 104473017 104473017 G A TDRD9 Missense_Mutation p.M638I 0.14 tolerated(0.34) benign(0.026) TCGA-IB-7651-01 14 104639499 104639499 G A KIF26A Missense_Mutation p.E536K 0.13 deleterious(0) benign(0.043) TCGA-IB-7651-01 14 104642801 104642801 G A KIF26A Missense_Mutation p.A1226T 0.20 tolerated(0.61) benign(0.002) TCGA-IB-7651-01 14 105061343 105061343 C T TMEM179 3'UTR 0.15 TCGA-IB-7651-01 14 105063451 105063451 C T TMEM179 Missense_Mutation p.A107T 0.28 tolerated(0.07) benign(0.418) TCGA-IB-7651-01 14 105170381 105170381 G T INF2 Intron 0.09 TCGA-IB-7651-01 14 105174179 105174179 C T INF2 Silent p.T525T 0.07 TCGA-IB-7651-01 14 105174224 105174224 C T INF2 Silent p.A540A 0.16 TCGA-IB-7651-01 14 105177986 105177986 C T INF2 Silent p.P813P 0.15 TCGA-IB-7651-01 14 105179212 105179212 C T INF2 Silent p.I886I 0.15 TCGA-IB-7651-01 14 105179914 105179914 C T INF2 Missense_Mutation p.S1004F 0.17 deleterious_low_confidence(0.01) unknown(0) TCGA-IB-7651-01 14 105180722 105180722 C T INF2 Missense_Mutation p.R1075C 0.16 deleterious_low_confidence(0) unknown(0) TCGA-IB-7651-01 14 105181089 105181089 C T INF2 Missense_Mutation p.A1197V 0.17 tolerated_low_confidence(0.12) unknown(0) TCGA-IB-7651-01 14 105208312 105208312 C T ADSSL1 Silent p.I350I 0.18 TCGA-IB-7651-01 14 105213442 105213442 A C ADSSL1 3'UTR 0.20 TCGA-IB-7651-01 14 105258975 105258975 G A AKT1 Silent p.S2S 0.08 TCGA-IB-7651-01 14 105353352 105353352 G A CEP170B Missense_Mutation p.A926T 0.10 tolerated(0.14) possibly_damaging(0.891) TCGA-IB-7651-01 14 105353570 105353570 C T CEP170B Silent p.T998T 0.17 TCGA-IB-7651-01 14 105354058 105354058 C T CEP170B Missense_Mutation p.A1161V 0.21 deleterious(0.04) benign(0.06) TCGA-IB-7651-01 14 105407193 105407193 G A AHNAK2 Silent p.F4865F 0.17 TCGA-IB-7651-01 14 105408319 105408319 G A AHNAK2 Missense_Mutation p.A4490V 0.19 benign(0.034) TCGA-IB-7651-01 14 105411530 105411530 G T AHNAK2 Missense_Mutation p.L3420I 0.18 benign(0.006) TCGA-IB-7651-01 14 105412761 105412761 C T AHNAK2 Silent p.E3009E 0.03 TCGA-IB-7651-01 14 105412916 105412916 C T AHNAK2 Missense_Mutation p.A2958T 0.20 benign(0.008) TCGA-IB-7651-01 14 105414796 105414796 G T AHNAK2 Missense_Mutation p.S2331Y 0.18 possibly_damaging(0.781) TCGA-IB-7651-01 14 105418648 105418648 C A AHNAK2 Missense_Mutation p.S1047I 0.04 possibly_damaging(0.856) TCGA-IB-7651-01 14 105419440 105419440 G T AHNAK2 Missense_Mutation p.P783H 0.19 probably_damaging(0.987) TCGA-IB-7651-01 14 105420293 105420293 C A AHNAK2 Nonsense_Mutation p.E499* 0.19 TCGA-IB-7651-01 14 105477705 105477705 A G CDCA4 Missense_Mutation p.Y188H 0.17 deleterious(0.04) possibly_damaging(0.465) TCGA-IB-7651-01 14 105517442 105517442 G A GPR132 Silent p.T344T 0.05 TCGA-IB-7651-01 14 105613723 105613723 C T JAG2 Missense_Mutation p.G807S 0.13 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 14 105614748 105614748 G A JAG2 Silent p.C683C 0.11 TCGA-IB-7651-01 14 105617706 105617706 C T JAG2 Missense_Mutation p.C394Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 14 105643299 105643299 C T NUDT14 Splice_Site p.X64_splice 0.15 TCGA-IB-7651-01 14 105677562 105677562 G A BRF1 Silent p.S631S 0.20 TCGA-IB-7651-01 14 105695248 105695248 G T BRF1 Missense_Mutation p.L233I 0.21 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 14 105905013 105905013 C T MTA1 Silent p.Y11Y 0.19 TCGA-IB-7651-01 14 105995269 105995269 A C TMEM121 Missense_Mutation p.N33T 0.24 deleterious(0.01) benign(0.059) TCGA-IB-7651-01 14 106054176 106054176 A G IGHA2 Missense_Mutation p.S115P 0.24 tolerated(0.06) benign(0.025) TCGA-IB-7651-01 14 106110927 106110927 G A IGHG2 Silent p.S67S 0.22 TCGA-IB-7651-01 14 106173701 106173701 G A IGHA1 Missense_Mutation p.T289I 0.10 tolerated(0.23) benign(0.045) TCGA-IB-7651-01 14 106174356 106174356 G T IGHA1 Missense_Mutation p.L145I 0.24 tolerated(0.48) possibly_damaging(0.729) TCGA-IB-7651-01 14 106174790 106174790 G A IGHA1 Silent p.T71T 0.17 TCGA-IB-7651-01 14 106208468 106208468 G A IGHG1 Silent p.C144C 0.10 TCGA-IB-7651-01 14 106209262 106209262 G T IGHG1 Silent p.G49G 0.19 TCGA-IB-7651-01 14 106237597 106237597 G A IGHG3 Silent p.G49G 0.23 TCGA-IB-7651-01 14 106452714 106452714 C T IGHV1-2 Missense_Mutation p.S103N 0.11 tolerated(0.24) benign(0.026) TCGA-IB-7651-01 14 106452767 106452767 G A IGHV1-2 Silent p.G85G 0.04 TCGA-IB-7651-01 14 106494250 106494250 C A IGHV2-5 Missense_Mutation p.S81I 0.20 deleterious(0) possibly_damaging(0.879) TCGA-IB-7651-01 14 106539333 106539333 G A IGHV1-8 Missense_Mutation p.P33S 0.46 deleterious(0.02) possibly_damaging(0.693) TCGA-IB-7651-01 14 106691796 106691796 G A IGHV3-21 Silent p.Y76Y 0.16 TCGA-IB-7651-01 14 106725432 106725432 G T IGHV3-23 Silent p.S40S 0.11 TCGA-IB-7651-01 14 106791066 106791066 G A IGHV3-30 Missense_Mutation p.T97M 0.06 tolerated_low_confidence(0.19) benign(0.079) TCGA-IB-7651-01 14 106791288 106791288 A C IGHV3-30 Missense_Mutation p.L23R 0.06 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-IB-7651-01 14 106791307 106791307 C T IGHV3-30 Missense_Mutation p.V17I 0.06 tolerated_low_confidence(0.05) probably_damaging(0.992) TCGA-IB-7651-01 14 106815742 106815742 C T IGHV3-33 Missense_Mutation p.A111T 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.57) TCGA-IB-7651-01 14 106815818 106815818 G A IGHV3-33 Silent p.G85G 0.05 TCGA-IB-7651-01 14 106845525 106845525 T C IGHV3-35 Missense_Mutation p.N50S 0.19 tolerated_low_confidence(1) benign(0.004) TCGA-IB-7651-01 14 106866479 106866479 G T IGHV3-38 Missense_Mutation p.S92Y 0.05 deleterious_low_confidence(0.02) possibly_damaging(0.761) TCGA-IB-7651-01 14 106877742 106877742 G A IGHV4-39 Silent p.S84S 0.09 TCGA-IB-7651-01 14 106877921 106877921 G A IGHV4-39 Silent p.L25L 0.14 TCGA-IB-7651-01 14 106926254 106926254 G T IGHV3-43 Missense_Mutation p.N96K 0.08 deleterious_low_confidence(0.04) benign(0.105) TCGA-IB-7651-01 14 106926451 106926451 C T IGHV3-43 Missense_Mutation p.V31I 0.10 deleterious_low_confidence(0.02) benign(0.246) TCGA-IB-7651-01 14 107013102 107013102 C A IGHV3-49 Nonsense_Mutation p.E65* 0.16 TCGA-IB-7651-01 14 107049117 107049117 C T IGHV3-53 Missense_Mutation p.E2K 0.19 tolerated_low_confidence(0.19) benign(0.029) TCGA-IB-7651-01 14 107283063 107283063 C T IGHV7-81 Missense_Mutation p.G27D 0.16 deleterious(0.01) probably_damaging(0.987) TCGA-IB-7651-01 14 19377733 19377733 C T OR11H12 Missense_Mutation p.T47I 0.10 tolerated(0.51) benign(0.004) TCGA-IB-7651-01 14 19566057 19566057 A C POTEG Missense_Mutation p.K367N 0.07 deleterious(0.04) benign(0.021) TCGA-IB-7651-01 14 20215653 20215653 C T OR4Q3 Silent p.L23L 0.12 TCGA-IB-7651-01 14 20216181 20216181 C T OR4Q3 Silent p.L199L 0.05 TCGA-IB-7651-01 14 20216295 20216295 G A OR4Q3 Missense_Mutation p.V237I 0.10 deleterious(0) benign(0.012) TCGA-IB-7651-01 14 20248580 20248580 C A OR4M1 Silent p.S33S 0.12 TCGA-IB-7651-01 14 20249045 20249045 C A OR4M1 Silent p.A188A 0.13 TCGA-IB-7651-01 14 20296521 20296521 A G OR4N2 Missense_Mutation p.H305R 0.14 tolerated(0.21) benign(0.003) TCGA-IB-7651-01 14 20389182 20389182 G T OR4K5 Missense_Mutation p.R139S 0.12 deleterious(0.03) benign(0.035) TCGA-IB-7651-01 14 20404104 20404104 C A OR4K1 Silent p.S93S 0.12 TCGA-IB-7651-01 14 20404198 20404198 G T OR4K1 Missense_Mutation p.A125S 0.11 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 14 20404376 20404376 T C OR4K1 Missense_Mutation p.V184A 0.15 deleterious(0) possibly_damaging(0.73) TCGA-IB-7651-01 14 20483064 20483064 C A OR4K14 Nonsense_Mutation p.G97* 0.16 TCGA-IB-7651-01 14 20666038 20666038 C A OR11G2 Missense_Mutation p.L182I 0.14 deleterious(0.03) possibly_damaging(0.702) TCGA-IB-7651-01 14 20666258 20666258 C T OR11G2 Missense_Mutation p.S255F 0.16 deleterious(0) possibly_damaging(0.624) TCGA-IB-7651-01 14 20692788 20692788 T C OR11H6 Missense_Mutation p.I307T 0.22 deleterious(0) possibly_damaging(0.589) TCGA-IB-7651-01 14 20770011 20770011 C A TTC5 Missense_Mutation p.Q55H 0.08 tolerated(0.11) benign(0.003) TCGA-IB-7651-01 14 20779691 20779691 C T CCNB1IP1 3'UTR 0.04 TCGA-IB-7651-01 14 20784609 20784609 A G CCNB1IP1 Missense_Mutation p.V25A 0.14 deleterious(0) possibly_damaging(0.801) TCGA-IB-7651-01 14 20825861 20825861 A G PARP2 Missense_Mutation p.T553A 0.16 deleterious(0.05) benign(0.065) TCGA-IB-7651-01 14 20841224 20841224 A G TEP1 Silent p.N2299N 0.17 TCGA-IB-7651-01 14 20841685 20841685 C T TEP1 Missense_Mutation p.R2221Q 0.18 tolerated(0.18) benign(0.106) TCGA-IB-7651-01 14 20841723 20841723 C T TEP1 Silent p.E2208E 0.06 TCGA-IB-7651-01 14 20843925 20843925 C T TEP1 Missense_Mutation p.D2118N 0.17 deleterious(0.04) benign(0.29) TCGA-IB-7651-01 14 20850180 20850180 C T TEP1 Missense_Mutation p.R1439Q 0.17 tolerated(0.55) benign(0.007) TCGA-IB-7651-01 14 20872901 20872901 C T TEP1 Missense_Mutation p.V301I 0.16 tolerated(1) benign(0.004) TCGA-IB-7651-01 14 20916132 20916132 C T OSGEP Missense_Mutation p.V242I 0.10 tolerated(0.12) benign(0.075) TCGA-IB-7651-01 14 20940628 20940628 G A PNP Missense_Mutation p.R58Q 0.07 tolerated(0.74) benign(0.001) TCGA-IB-7651-01 14 21052116 21052116 C A RNASE11 Missense_Mutation p.S173I 0.08 deleterious(0) probably_damaging(0.972) TCGA-IB-7651-01 14 21215860 21215860 C T EDDM3A Missense_Mutation p.P41S 0.17 tolerated(0.25) probably_damaging(0.998) TCGA-IB-7651-01 14 21502136 21502136 C A RNASE13 Missense_Mutation p.Q104H 0.09 tolerated(0.14) possibly_damaging(0.694) TCGA-IB-7651-01 14 21547044 21547044 C A ARHGEF40 Missense_Mutation p.L750M 0.13 tolerated(0.13) probably_damaging(0.996) TCGA-IB-7651-01 14 21561402 21561402 C T ZNF219 Silent p.P18P 0.22 TCGA-IB-7651-01 14 21702191 21702191 G A HNRNPC Silent p.F54F 0.20 TCGA-IB-7651-01 14 21788264 21788264 T G RPGRIP1 Missense_Mutation p.I465M 0.21 tolerated(0.13) benign(0.177) TCGA-IB-7651-01 14 21830444 21830444 G A SUPT16H Nonsense_Mutation p.R569* 0.21 TCGA-IB-7651-01 14 21859667 21859667 C T CHD8 Nonsense_Mutation p.W2340* 0.16 TCGA-IB-7651-01 14 21861744 21861744 G A CHD8 Silent p.D2070D 0.11 TCGA-IB-7651-01 14 21863231 21863231 C T CHD8 Missense_Mutation p.A1744T 0.08 tolerated(0.33) benign(0.185) TCGA-IB-7651-01 14 21868399 21868399 G A CHD8 Silent p.I1546I 0.22 TCGA-IB-7651-01 14 21869119 21869119 G A CHD8 Missense_Mutation p.R1429W 0.20 deleterious(0) possibly_damaging(0.895) TCGA-IB-7651-01 14 21894391 21894391 G A CHD8 Missense_Mutation p.P538S 0.10 tolerated(0.27) possibly_damaging(0.643) TCGA-IB-7651-01 14 21899168 21899168 C T CHD8 Missense_Mutation p.R212Q 0.15 tolerated_low_confidence(0.19) possibly_damaging(0.598) TCGA-IB-7651-01 14 21931868 21931868 G A RAB2B Missense_Mutation p.H141Y 0.19 deleterious(0.01) benign(0.101) TCGA-IB-7651-01 14 21961134 21961134 G T TOX4 Missense_Mutation p.Q453H 0.18 tolerated(0.08) benign(0.36) TCGA-IB-7651-01 14 21971467 21971467 G A METTL3 Missense_Mutation p.A191V 0.18 tolerated(0.31) benign(0.039) TCGA-IB-7651-01 14 21991201 21991201 G A SALL2 Silent p.S887S 0.23 TCGA-IB-7651-01 14 21993139 21993139 G T SALL2 Silent p.L241L 0.13 TCGA-IB-7651-01 14 22038099 22038099 G A OR10G3 Silent p.I259I 0.18 TCGA-IB-7651-01 14 22102553 22102553 A C OR10G2 Missense_Mutation p.L149R 0.18 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 14 22204513 22204513 G A TRAV4 Missense_Mutation p.A5T 0.28 tolerated(1) benign(0.002) TCGA-IB-7651-01 14 22294121 22294121 G A TRAV10 Silent p.E75E 0.19 TCGA-IB-7651-01 14 22315371 22315371 C T TRAV8-2 Silent p.S103S 0.15 TCGA-IB-7651-01 14 22337474 22337474 G T TRAV13-1 Missense_Mutation p.A89S 0.19 tolerated(0.27) benign(0.373) TCGA-IB-7651-01 14 22434167 22434167 T A TRAV12-3 Missense_Mutation p.S74T 0.18 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 14 22458898 22458898 G A TRAV16 Missense_Mutation p.G17E 0.22 tolerated(0.2) benign(0.109) TCGA-IB-7651-01 14 22471902 22471902 G A TRAV18 Missense_Mutation p.A109T 0.12 deleterious(0) possibly_damaging(0.474) TCGA-IB-7651-01 14 22580906 22580906 T C TRAV25 Silent p.F83F 0.08 TCGA-IB-7651-01 14 22616333 22616333 G A TRAV27 Missense_Mutation p.S25N 0.17 tolerated(0.34) benign(0.051) TCGA-IB-7651-01 14 22616368 22616368 C A TRAV27 Missense_Mutation p.L37I 0.20 tolerated(0.23) benign(0.003) TCGA-IB-7651-01 14 23240499 23240499 G A OXA1L Silent p.T435T 0.22 TCGA-IB-7651-01 14 23243280 23243280 G A SLC7A7 Silent p.L431L 0.15 TCGA-IB-7651-01 14 23282281 23282281 C T SLC7A7 Silent p.E109E 0.18 TCGA-IB-7651-01 14 23306057 23306057 C A MMP14 Missense_Mutation p.L11I 0.22 tolerated(0.52) unknown(0) TCGA-IB-7651-01 14 23306078 23306078 C T MMP14 Missense_Mutation p.L18F 0.11 tolerated(0.09) unknown(0) TCGA-IB-7651-01 14 23311685 23311685 C T MMP14 Silent p.R149R 0.17 TCGA-IB-7651-01 14 23341345 23341345 G A LRP10 5'UTR 0.16 TCGA-IB-7651-01 14 23345402 23345402 G A LRP10 Silent p.T415T 0.05 TCGA-IB-7651-01 14 23353936 23353936 C T REM2 Missense_Mutation p.R53W 0.17 deleterious(0) benign(0.001) TCGA-IB-7651-01 14 23354048 23354048 C T REM2 Missense_Mutation p.P90L 0.09 deleterious(0) possibly_damaging(0.651) TCGA-IB-7651-01 14 23354091 23354091 G T REM2 Silent p.G104G 0.17 TCGA-IB-7651-01 14 23398403 23398403 C A PRMT5 Intron 0.16 TCGA-IB-7651-01 14 23502760 23502760 C T PSMB5 Missense_Mutation p.A108T 0.11 deleterious(0.02) benign(0.39) TCGA-IB-7651-01 14 23504175 23504175 C A PSMB5 5'UTR 0.28 TCGA-IB-7651-01 14 23528517 23528517 C A ACIN1 Missense_Mutation p.R1289M 0.19 unknown(0) TCGA-IB-7651-01 14 23528572 23528572 G A ACIN1 Missense_Mutation p.R1271W 0.17 unknown(0) TCGA-IB-7651-01 14 23587999 23587999 G A CEBPE Missense_Mutation p.A101V 0.18 tolerated(0.3) benign(0.001) TCGA-IB-7651-01 14 23609809 23609809 T G SLC7A8 Missense_Mutation p.K220T 0.18 tolerated(0.41) benign(0.018) TCGA-IB-7651-01 14 23793419 23793419 G A PABPN1 Missense_Mutation p.A268T 0.05 tolerated(0.07) benign(0.044) TCGA-IB-7651-01 14 23794499 23794499 A G BCL2L2-PABPN1 3'UTR 0.18 TCGA-IB-7651-01 14 23821156 23821156 C T SLC22A17 Splice_Site p.X89_splice 0.20 TCGA-IB-7651-01 14 23821267 23821267 T C SLC22A17 Missense_Mutation p.T53A 0.19 tolerated_low_confidence(0.5) benign(0.002) TCGA-IB-7651-01 14 23821354 23821354 C T SLC22A17 Missense_Mutation p.A24T 0.10 tolerated_low_confidence(0.07) benign(0.001) TCGA-IB-7651-01 14 23828965 23828965 G A EFS Missense_Mutation p.A241V 0.20 tolerated(0.17) benign(0.008) TCGA-IB-7651-01 14 23846456 23846456 C T CMTM5 5'UTR 0.18 TCGA-IB-7651-01 14 23856842 23856842 C T MYH6 Missense_Mutation p.E1516K 0.16 deleterious(0.01) possibly_damaging(0.895) TCGA-IB-7651-01 14 23857491 23857491 G A MYH6 Missense_Mutation p.A1411V 0.22 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 14 23873579 23873579 T G MYH6 Missense_Mutation p.I221L 0.16 deleterious(0.01) probably_damaging(0.962) TCGA-IB-7651-01 14 23886420 23886420 G T MYH7 Silent p.A1487A 0.16 TCGA-IB-7651-01 14 23895007 23895007 G A MYH7 Missense_Mutation p.A728V 0.18 deleterious(0.01) benign(0.066) TCGA-IB-7651-01 14 23895227 23895227 C T MYH7 Missense_Mutation p.R703H 0.12 deleterious(0) probably_damaging(0.984) TCGA-IB-7651-01 14 24033058 24033058 G T AP1G2 Missense_Mutation p.L367M 0.13 tolerated(0.63) probably_damaging(1) TCGA-IB-7651-01 14 24033572 24033572 C T AP1G2 Missense_Mutation p.R316H 0.13 deleterious(0.01) benign(0.04) TCGA-IB-7651-01 14 24040262 24040262 C T JPH4 Missense_Mutation p.A560T 0.21 tolerated(0.52) benign(0.002) TCGA-IB-7651-01 14 24044904 24044904 C T JPH4 Missense_Mutation p.A381T 0.17 tolerated(0.06) benign(0.117) TCGA-IB-7651-01 14 24045124 24045124 G A JPH4 Silent p.G307G 0.13 TCGA-IB-7651-01 14 24470603 24470603 C A DHRS4L2 Missense_Mutation p.P181H 0.15 deleterious(0.01) probably_damaging(0.939) TCGA-IB-7651-01 14 24473710 24473710 C A DHRS4L2 Intron 0.17 TCGA-IB-7651-01 14 24523715 24523715 C T LRRC16B Silent p.G119G 0.15 TCGA-IB-7651-01 14 24527939 24527939 C A LRRC16B Silent p.T481T 0.21 TCGA-IB-7651-01 14 24566204 24566204 C T PCK2 Nonsense_Mutation p.R45* 0.19 TCGA-IB-7651-01 14 24567497 24567497 C T PCK2 Nonsense_Mutation p.Q121* 0.18 TCGA-IB-7651-01 14 24568398 24568398 G A PCK2 Missense_Mutation p.A269T 0.09 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 14 24587623 24587623 C T DCAF11 Nonsense_Mutation p.R202* 0.18 TCGA-IB-7651-01 14 24608299 24608299 G A EMC9 Missense_Mutation p.R183W 0.15 deleterious(0.03) benign(0.089) TCGA-IB-7651-01 14 24617572 24617572 G A RNF31 Missense_Mutation p.V149I 0.20 deleterious(0.04) possibly_damaging(0.779) TCGA-IB-7651-01 14 24619877 24619877 C T RNF31 Missense_Mutation p.S423L 0.10 tolerated(0.32) benign(0.069) TCGA-IB-7651-01 14 24619958 24619958 G T RNF31 Missense_Mutation p.S450I 0.08 deleterious(0.05) benign(0.1) TCGA-IB-7651-01 14 24635385 24635385 G A IRF9 Missense_Mutation p.A388T 0.21 deleterious(0) possibly_damaging(0.849) TCGA-IB-7651-01 14 24641667 24641667 C A REC8 Intron 0.25 TCGA-IB-7651-01 14 24642111 24642111 G A REC8 Silent p.E43E 0.20 TCGA-IB-7651-01 14 24646361 24646361 G A REC8 Silent p.E212E 0.16 TCGA-IB-7651-01 14 24651000 24651000 G A IPO4 Nonsense_Mutation p.R953* 0.20 TCGA-IB-7651-01 14 24652349 24652349 C T IPO4 Missense_Mutation p.V752M 0.16 tolerated(0.25) benign(0.011) TCGA-IB-7651-01 14 24658926 24658926 C T TM9SF1 Missense_Mutation p.A506T 0.16 deleterious(0.03) benign(0.069) TCGA-IB-7651-01 14 24683543 24683543 G A NEDD8-MDP1 Missense_Mutation p.R143W 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 14 24684946 24684946 C T MDP1 Missense_Mutation p.S32N 0.15 tolerated(0.24) benign(0.003) TCGA-IB-7651-01 14 24701474 24701474 C A NEDD8 5'UTR 0.14 TCGA-IB-7651-01 14 24702249 24702249 C T GMPR2 5'UTR 0.29 TCGA-IB-7651-01 14 24710962 24710962 C A TINF2 Missense_Mutation p.K106N 0.18 tolerated(0.05) possibly_damaging(0.607) TCGA-IB-7651-01 14 24724683 24724683 C T TGM1 Missense_Mutation p.G511D 0.08 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 14 24731070 24731070 G C TGM1 Missense_Mutation p.N113K 0.08 tolerated(0.98) benign(0.001) TCGA-IB-7651-01 14 24768170 24768170 G A DHRS1 Missense_Mutation p.A48V 0.12 deleterious(0.02) possibly_damaging(0.612) TCGA-IB-7651-01 14 24771544 24771544 C T NOP9 Nonsense_Mutation p.Q353* 0.18 TCGA-IB-7651-01 14 24772330 24772330 C T NOP9 Silent p.A398A 0.14 TCGA-IB-7651-01 14 24780826 24780826 G A LTB4R2 Missense_Mutation p.R319H 0.24 tolerated(0.09) benign(0.306) TCGA-IB-7651-01 14 24806143 24806143 C A RIPK3 Missense_Mutation p.E428D 0.19 tolerated(0.26) benign(0.416) TCGA-IB-7651-01 14 24808519 24808519 G T RIPK3 Missense_Mutation p.S58Y 0.19 tolerated(0.1) probably_damaging(0.982) TCGA-IB-7651-01 14 24838511 24838511 G T NFATC4 Intron 0.13 TCGA-IB-7651-01 14 24838944 24838944 C T NFATC4 Missense_Mutation p.P177S 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 14 24839076 24839076 G A NFATC4 Missense_Mutation p.A221T 0.15 deleterious(0) benign(0.002) TCGA-IB-7651-01 14 24843013 24843013 G A NFATC4 Missense_Mutation p.V621M 0.23 deleterious(0) probably_damaging(0.985) TCGA-IB-7651-01 14 24843536 24843536 G T NFATC4 Missense_Mutation p.Q642H 0.18 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 14 24847026 24847026 C T NFATC4 3'UTR 0.19 TCGA-IB-7651-01 14 24868646 24868646 C T NYNRIN Missense_Mutation p.A65V 0.15 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-IB-7651-01 14 24877090 24877090 C A NYNRIN Missense_Mutation p.L72M 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-IB-7651-01 14 24877997 24877997 C A NYNRIN Missense_Mutation p.L333I 0.15 tolerated_low_confidence(0.1) benign(0.04) TCGA-IB-7651-01 14 24878150 24878150 T A NYNRIN Missense_Mutation p.S384T 0.11 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-IB-7651-01 14 24880593 24880593 A C NYNRIN Missense_Mutation p.K860T 0.20 deleterious_low_confidence(0.01) probably_damaging(0.932) TCGA-IB-7651-01 14 24884117 24884117 C T NYNRIN Silent p.I1054I 0.17 TCGA-IB-7651-01 14 24884802 24884802 C T NYNRIN Missense_Mutation p.R1283C 0.18 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-IB-7651-01 14 24885464 24885464 C T NYNRIN Silent p.G1503G 0.17 TCGA-IB-7651-01 14 24886379 24886379 G A NYNRIN Silent p.A1808A 0.16 TCGA-IB-7651-01 14 24900668 24900668 G T KHNYN Splice_Site p.X68_splice 0.21 TCGA-IB-7651-01 14 24901383 24901383 G A KHNYN Missense_Mutation p.A306T 0.21 tolerated(0.14) benign(0.002) TCGA-IB-7651-01 14 24976656 24976656 G T CMA1 Missense_Mutation p.L39M 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-IB-7651-01 14 25044478 25044478 A G CTSG Missense_Mutation p.W66R 0.17 tolerated(0.43) probably_damaging(0.915) TCGA-IB-7651-01 14 25288317 25288317 G A STXBP6 Nonsense_Mutation p.R179* 0.20 TCGA-IB-7651-01 14 26917292 26917292 C T NOVA1 Missense_Mutation p.G466D 0.07 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 14 26941524 26941524 A C NOVA1 Splice_Site p.X173_splice 0.19 TCGA-IB-7651-01 14 29236501 29236501 G A FOXG1 Missense_Mutation p.D6N 0.12 deleterious_low_confidence(0) unknown(0) TCGA-IB-7651-01 14 29236593 29236593 C T FOXG1 Silent p.S36S 0.22 TCGA-IB-7651-01 14 29237629 29237629 G A FOXG1 Missense_Mutation p.A382T 0.23 tolerated(0.13) benign(0.07) TCGA-IB-7651-01 14 29237961 29237961 C T FOXG1 3'UTR 0.17 TCGA-IB-7651-01 14 30107904 30107904 G A PRKD1 Silent p.C301C 0.19 TCGA-IB-7651-01 14 31077197 31077197 C T G2E3 Silent p.C474C 0.16 TCGA-IB-7651-01 14 31085649 31085649 C T G2E3 Missense_Mutation p.T677I 0.15 deleterious(0) probably_damaging(0.932) TCGA-IB-7651-01 14 31119778 31119778 A G SCFD1 Missense_Mutation p.D226G 0.18 deleterious(0) probably_damaging(0.981) TCGA-IB-7651-01 14 31144232 31144232 C T SCFD1 Silent p.L401L 0.16 TCGA-IB-7651-01 14 31348032 31348032 C T COCH Silent p.N85N 0.14 TCGA-IB-7651-01 14 31355162 31355162 G T COCH Missense_Mutation p.G374V 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 14 31358724 31358724 G A COCH Intron 0.20 TCGA-IB-7651-01 14 31364597 31364597 C T STRN3 3'UTR 0.20 TCGA-IB-7651-01 14 31374730 31374730 G T STRN3 Silent p.G641G 0.20 TCGA-IB-7651-01 14 31416418 31416418 C A STRN3 Missense_Mutation p.Q198H 0.13 tolerated(0.11) possibly_damaging(0.837) TCGA-IB-7651-01 14 31576881 31576881 G A HECTD1 Silent p.G2170G 0.21 TCGA-IB-7651-01 14 31597095 31597095 G A HECTD1 Missense_Mutation p.T1626I 0.19 deleterious(0.01) probably_damaging(0.969) TCGA-IB-7651-01 14 31597990 31597990 G T HECTD1 Missense_Mutation p.S1529R 0.24 tolerated(0.12) probably_damaging(0.962) TCGA-IB-7651-01 14 31618318 31618318 A G HECTD1 Missense_Mutation p.V735A 0.20 tolerated(0.12) possibly_damaging(0.549) TCGA-IB-7651-01 14 31641142 31641142 A G HECTD1 Silent p.G419G 0.17 TCGA-IB-7651-01 14 31647447 31647447 T C HECTD1 Missense_Mutation p.T52A 0.17 deleterious(0) possibly_damaging(0.656) TCGA-IB-7651-01 14 31771685 31771685 G A RP11-596D21.1 RNA 0.14 TCGA-IB-7651-01 14 31819115 31819115 C T HEATR5A Missense_Mutation p.G570E 0.20 deleterious(0.02) benign(0.251) TCGA-IB-7651-01 14 31844154 31844154 G A HEATR5A Missense_Mutation p.H284Y 0.28 tolerated(0.14) benign(0.05) TCGA-IB-7651-01 14 32560065 32560065 G T ARHGAP5 Nonsense_Mutation p.G64* 0.14 TCGA-IB-7651-01 14 32560429 32560429 T C ARHGAP5 Missense_Mutation p.V185A 0.22 tolerated(0.32) benign(0.004) TCGA-IB-7651-01 14 32561798 32561798 G A ARHGAP5 Silent p.S641S 0.19 TCGA-IB-7651-01 14 32562094 32562094 A C ARHGAP5 Missense_Mutation p.K740T 0.21 tolerated(0.23) benign(0.04) TCGA-IB-7651-01 14 32902714 32902714 C T AKAP6 Silent p.S5S 0.15 TCGA-IB-7651-01 14 34029338 34029338 C T NPAS3 Silent p.G160G 0.20 TCGA-IB-7651-01 14 34269138 34269138 C T NPAS3 Missense_Mutation p.A542V 0.20 tolerated(0.08) possibly_damaging(0.75) TCGA-IB-7651-01 14 34269619 34269619 C T NPAS3 Silent p.G702G 0.24 TCGA-IB-7651-01 14 34985588 34985588 A G EAPP Silent p.C262C 0.08 TCGA-IB-7651-01 14 35036896 35036896 G A SNX6 Missense_Mutation p.A400V 0.18 deleterious(0) benign(0.403) TCGA-IB-7651-01 14 35245537 35245537 G A BAZ1A Silent p.R807R 0.17 TCGA-IB-7651-01 14 35483956 35483956 G A SRP54 Missense_Mutation p.G298D 0.16 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 14 35593373 35593373 C T KIAA0391 Silent p.L308L 0.20 TCGA-IB-7651-01 14 35735990 35735990 C T KIAA0391 Missense_Mutation p.R445W 0.20 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 14 35783581 35783581 C T PSMA6 Silent p.C201C 0.13 TCGA-IB-7651-01 14 35872963 35872963 G A NFKBIA Missense_Mutation p.T90I 0.18 tolerated(0.27) benign(0.261) TCGA-IB-7651-01 14 36004387 36004387 G A INSM2 Missense_Mutation p.R310H 0.10 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 14 36004916 36004916 G A INSM2 Silent p.E486E 0.17 TCGA-IB-7651-01 14 36041836 36041836 C T RALGAPA1 Missense_Mutation p.G1927D 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 14 36143867 36143867 G T RALGAPA1 Missense_Mutation p.T1052N 0.20 tolerated(0.41) possibly_damaging(0.625) TCGA-IB-7651-01 14 36154173 36154173 G T RALGAPA1 Missense_Mutation p.S913Y 0.17 tolerated(0.28) probably_damaging(0.998) TCGA-IB-7651-01 14 36295809 36295809 C T BRMS1L Silent p.S29S 0.16 TCGA-IB-7651-01 14 36840771 36840771 A C DPPA3P2 RNA 0.22 TCGA-IB-7651-01 14 36986961 36986961 C T NKX2-1 Missense_Mutation p.R243H 0.09 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 14 37050154 37050154 C T NKX2-8 Missense_Mutation p.A225T 0.20 tolerated(0.26) benign(0.007) TCGA-IB-7651-01 14 37050665 37050665 C T NKX2-8 Silent p.S54S 0.14 TCGA-IB-7651-01 14 37132272 37132272 C T PAX9 Nonsense_Mutation p.R59* 0.11 TCGA-IB-7651-01 14 37132689 37132689 G A PAX9 Missense_Mutation p.V198I 0.19 tolerated(0.12) probably_damaging(0.972) TCGA-IB-7651-01 14 37194861 37194861 C T SLC25A21 Missense_Mutation p.G118R 0.20 tolerated(0.36) probably_damaging(0.985) TCGA-IB-7651-01 14 37737973 37737973 A G MIPOL1 Missense_Mutation p.D121G 0.08 tolerated(0.1) possibly_damaging(0.69) TCGA-IB-7651-01 14 38016120 38016120 C T MIPOL1 Silent p.L425L 0.15 TCGA-IB-7651-01 14 38060474 38060474 T G FOXA1 3'UTR 0.18 TCGA-IB-7651-01 14 38061834 38061834 G A FOXA1 Missense_Mutation p.T52I 0.18 deleterious(0.01) possibly_damaging(0.698) TCGA-IB-7651-01 14 38678962 38678962 G A SSTR1 Nonsense_Mutation p.W123* 0.19 TCGA-IB-7651-01 14 38679130 38679130 T C SSTR1 Missense_Mutation p.L179P 0.19 tolerated(0.1) possibly_damaging(0.848) TCGA-IB-7651-01 14 38724293 38724293 C T CLEC14A Missense_Mutation p.S312N 0.17 tolerated(0.11) benign(0.018) TCGA-IB-7651-01 14 38724527 38724527 C T CLEC14A Missense_Mutation p.R234H 0.21 tolerated(0.52) benign(0.004) TCGA-IB-7651-01 14 38724650 38724650 C T CLEC14A Missense_Mutation p.R193H 0.20 tolerated(0.12) benign(0.067) TCGA-IB-7651-01 14 39510075 39510075 C T SEC23A Missense_Mutation p.R668Q 0.25 deleterious(0.01) benign(0.229) TCGA-IB-7651-01 14 39587259 39587259 G A GEMIN2 Silent p.Q104Q 0.17 TCGA-IB-7651-01 14 39639363 39639363 C A TRAPPC6B 5'UTR 0.21 TCGA-IB-7651-01 14 39650344 39650344 G A PNN Silent p.Q477Q 0.19 TCGA-IB-7651-01 14 39650731 39650731 T C PNN Silent p.S606S 0.13 TCGA-IB-7651-01 14 39706205 39706205 G T MIA2 Missense_Mutation p.E65D 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 14 42356113 42356113 C T LRFN5 Silent p.F95F 0.14 TCGA-IB-7651-01 14 42356347 42356347 G A LRFN5 Silent p.L173L 0.19 TCGA-IB-7651-01 14 42356731 42356731 A G LRFN5 Silent p.G301G 0.20 TCGA-IB-7651-01 14 42360508 42360508 A G LRFN5 Missense_Mutation p.M481V 0.19 tolerated(0.27) benign(0) TCGA-IB-7651-01 14 42360546 42360546 C T LRFN5 Silent p.G493G 0.19 TCGA-IB-7651-01 14 44973805 44973805 C T FSCB Missense_Mutation p.D796N 0.16 tolerated(0.09) unknown(0) TCGA-IB-7651-01 14 44974963 44974963 C T FSCB Missense_Mutation p.A410T 0.15 tolerated(0.26) benign(0.004) TCGA-IB-7651-01 14 45431649 45431649 C A FAM179B Missense_Mutation p.L9I 0.18 tolerated_low_confidence(0.1) unknown(0) TCGA-IB-7651-01 14 45431712 45431712 G A FAM179B Missense_Mutation p.A30T 0.26 tolerated_low_confidence(0.21) benign(0.023) TCGA-IB-7651-01 14 45432435 45432435 G A FAM179B Missense_Mutation p.E271K 0.17 deleterious_low_confidence(0.01) benign(0.281) TCGA-IB-7651-01 14 45432455 45432455 C A FAM179B Missense_Mutation p.F277L 0.17 tolerated_low_confidence(0.24) probably_damaging(0.99) TCGA-IB-7651-01 14 45432488 45432488 C T FAM179B Silent p.G288G 0.21 TCGA-IB-7651-01 14 45433278 45433278 G A FAM179B Missense_Mutation p.A552T 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 14 45571884 45571884 G T PRPF39 Missense_Mutation p.S241I 0.16 deleterious(0) possibly_damaging(0.808) TCGA-IB-7651-01 14 45605403 45605403 T C FANCM Silent p.L57L 0.05 TCGA-IB-7651-01 14 45636216 45636216 G C FANCM Missense_Mutation p.V618L 0.16 tolerated(0.14) benign(0.002) TCGA-IB-7651-01 14 45645252 45645252 C T FANCM Missense_Mutation p.R1099C 0.18 tolerated(0.07) benign(0.002) TCGA-IB-7651-01 14 45667953 45667953 C T FANCM Silent p.T1941T 0.18 TCGA-IB-7651-01 14 45687562 45687562 T C MIS18BP1 Missense_Mutation p.Y922C 0.10 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 14 45693599 45693599 G T MIS18BP1 Missense_Mutation p.L731I 0.19 tolerated(0.06) benign(0.011) TCGA-IB-7651-01 14 45716257 45716257 G T MIS18BP1 Missense_Mutation p.T78N 0.17 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 14 47120482 47120482 C T RPL10L Missense_Mutation p.R153H 0.20 tolerated(0.18) benign(0.026) TCGA-IB-7651-01 14 47120892 47120892 C T RPL10L Silent p.P16P 0.18 TCGA-IB-7651-01 14 47324240 47324240 A T MDGA2 Missense_Mutation p.I957N 0.10 tolerated(0.14) benign(0.001) TCGA-IB-7651-01 14 47504353 47504353 C T MDGA2 Missense_Mutation p.M560I 0.04 tolerated(0.35) benign(0.009) TCGA-IB-7651-01 14 50044480 50044480 C A RPS29 3'UTR 0.19 TCGA-IB-7651-01 14 50088031 50088031 C A MGAT2 Silent p.L15L 0.20 TCGA-IB-7651-01 14 50092390 50092390 A G DNAAF2 Missense_Mutation p.V795A 0.11 tolerated(0.19) benign(0.002) TCGA-IB-7651-01 14 50094868 50094868 C T DNAAF2 Silent p.R623R 0.11 TCGA-IB-7651-01 14 50118009 50118009 C T POLE2 Missense_Mutation p.S433N 0.23 tolerated(0.28) benign(0.003) TCGA-IB-7651-01 14 50218425 50218425 C T KLHDC1 Nonsense_Mutation p.R386* 0.18 TCGA-IB-7651-01 14 50255946 50255946 T G NEMF Missense_Mutation p.N938T 0.16 tolerated(0.61) benign(0.003) TCGA-IB-7651-01 14 50318311 50318311 C A NEMF Missense_Mutation p.K67N 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 14 50641224 50641224 C T SOS2 Missense_Mutation p.R339H 0.07 deleterious(0) probably_damaging(0.96) TCGA-IB-7651-01 14 50768820 50768820 A G L2HGDH Missense_Mutation p.L108P 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 14 50799011 50799011 C T CDKL1 Missense_Mutation p.R313Q 0.17 tolerated(0.15) benign(0.005) TCGA-IB-7651-01 14 51094994 51094994 C T ATL1 Silent p.I455I 0.22 TCGA-IB-7651-01 14 51221342 51221342 G A NIN Missense_Mutation p.T1558M 0.15 deleterious(0.01) benign(0.299) TCGA-IB-7651-01 14 51223934 51223934 G A NIN Missense_Mutation p.R1272C 0.21 deleterious(0.02) benign(0.01) TCGA-IB-7651-01 14 51239168 51239168 G A NIN Nonsense_Mutation p.R278* 0.17 TCGA-IB-7651-01 14 51378884 51378884 C T PYGL Silent p.T586T 0.20 TCGA-IB-7651-01 14 51378995 51378995 G A PYGL Silent p.F549F 0.15 TCGA-IB-7651-01 14 51382068 51382068 G A PYGL Silent p.I463I 0.19 TCGA-IB-7651-01 14 52167809 52167809 C T FRMD6 Missense_Mutation p.L76F 0.21 deleterious(0) probably_damaging(0.971) TCGA-IB-7651-01 14 52182142 52182142 C T FRMD6 Silent p.L317L 0.21 TCGA-IB-7651-01 14 52493938 52493938 G A NID2 Silent p.G885G 0.20 TCGA-IB-7651-01 14 52534638 52534638 C A NID2 Missense_Mutation p.A158S 0.20 tolerated(0.05) benign(0.424) TCGA-IB-7651-01 14 52735160 52735160 C A PTGDR Missense_Mutation p.L210M 0.17 deleterious(0) probably_damaging(0.968) TCGA-IB-7651-01 14 52735331 52735331 C A PTGDR Missense_Mutation p.L267M 0.21 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 14 52957612 52957612 C T TXNDC16 Missense_Mutation p.A290T 0.16 deleterious(0) probably_damaging(0.95) TCGA-IB-7651-01 14 52978026 52978026 G T TXNDC16 Missense_Mutation p.L230I 0.16 tolerated(0.46) benign(0.017) TCGA-IB-7651-01 14 53518626 53518626 C T DDHD1 Silent p.S819S 0.20 TCGA-IB-7651-01 14 53540518 53540518 T C DDHD1 Missense_Mutation p.H446R 0.19 tolerated(0.38) benign(0.001) TCGA-IB-7651-01 14 53558604 53558604 G A DDHD1 Silent p.A396A 0.20 TCGA-IB-7651-01 14 54417345 54417345 C T BMP4 Missense_Mutation p.R211Q 0.14 tolerated(0.43) benign(0.006) TCGA-IB-7651-01 14 54417408 54417408 A G BMP4 Missense_Mutation p.V190A 0.20 tolerated(0.89) benign(0) TCGA-IB-7651-01 14 55004875 55004875 G A CGRRF1 Missense_Mutation p.G258E 0.16 tolerated(0.23) probably_damaging(0.999) TCGA-IB-7651-01 14 55255700 55255700 C T SAMD4A 3'UTR 0.17 TCGA-IB-7651-01 14 55310453 55310453 C A GCH1 3'UTR 0.18 TCGA-IB-7651-01 14 55326402 55326402 G A GCH1 Missense_Mutation p.A169V 0.19 deleterious(0.02) probably_damaging(1) TCGA-IB-7651-01 14 55455901 55455901 G T WDHD1 Nonsense_Mutation p.C457* 0.18 TCGA-IB-7651-01 14 55462511 55462511 C A WDHD1 Missense_Mutation p.K321N 0.18 tolerated(0.07) benign(0.13) TCGA-IB-7651-01 14 55511079 55511079 C A SOCS4 Nonsense_Mutation p.C440* 0.24 TCGA-IB-7651-01 14 55636179 55636179 G A DLGAP5 Nonsense_Mutation p.R496* 0.18 TCGA-IB-7651-01 14 55817495 55817495 T C FBXO34 Silent p.S129S 0.22 TCGA-IB-7651-01 14 55818571 55818571 G A FBXO34 Missense_Mutation p.G488D 0.18 tolerated(0.25) possibly_damaging(0.784) TCGA-IB-7651-01 14 55836433 55836433 C T ATG14 Silent p.A461A 0.18 TCGA-IB-7651-01 14 55836605 55836605 G T ATG14 Missense_Mutation p.S404Y 0.15 deleterious(0) probably_damaging(0.97) TCGA-IB-7651-01 14 55844555 55844555 C T ATG14 Missense_Mutation p.S385N 0.15 tolerated(0.32) benign(0) TCGA-IB-7651-01 14 56103175 56103175 A G KTN1 Silent p.L490L 0.16 TCGA-IB-7651-01 14 57268778 57268778 G T OTX2 Missense_Mutation p.A190D 0.21 deleterious(0.01) possibly_damaging(0.67) TCGA-IB-7651-01 14 57272168 57272168 A G OTX2 Missense_Mutation p.S3P 0.17 deleterious(0.01) possibly_damaging(0.894) TCGA-IB-7651-01 14 57713495 57713495 C A EXOC5 Missense_Mutation p.E68D 0.04 deleterious(0.03) benign(0.228) TCGA-IB-7651-01 14 57735932 57735932 C T AP5M1 5'UTR 0.19 TCGA-IB-7651-01 14 57752979 57752979 T G AP5M1 Missense_Mutation p.C444W 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 14 58063507 58063507 G T SLC35F4 Missense_Mutation p.P37T 0.13 tolerated_low_confidence(0.45) benign(0.001) TCGA-IB-7651-01 14 58605363 58605363 A C C14orf37 Silent p.G238G 0.20 TCGA-IB-7651-01 14 58605508 58605508 T C C14orf37 Missense_Mutation p.Q190R 0.17 tolerated(0.06) benign(0.145) TCGA-IB-7651-01 14 58697142 58697142 G A ACTR10 Missense_Mutation p.E272K 0.17 deleterious(0.04) possibly_damaging(0.486) TCGA-IB-7651-01 14 58811415 58811415 T G ARID4A Silent p.P303P 0.14 TCGA-IB-7651-01 14 58838690 58838690 G A ARID4A Missense_Mutation p.A1253T 0.20 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 14 58949251 58949251 G A KIAA0586 Missense_Mutation p.A1042T 0.17 tolerated(0.08) benign(0.02) TCGA-IB-7651-01 14 59105255 59105255 G A DACT1 Missense_Mutation p.R112K 0.15 tolerated(0.11) benign(0.337) TCGA-IB-7651-01 14 59112077 59112077 G A DACT1 Missense_Mutation p.V246I 0.16 tolerated(0.08) benign(0.025) TCGA-IB-7651-01 14 59730276 59730276 G A DAAM1 Silent p.T27T 0.19 TCGA-IB-7651-01 14 59797313 59797313 A C DAAM1 Missense_Mutation p.K489N 0.15 deleterious(0.02) unknown(0) TCGA-IB-7651-01 14 59814285 59814285 C T DAAM1 Missense_Mutation p.R712W 0.10 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 14 59835462 59835462 G T DAAM1 Missense_Mutation p.R1041L 0.22 deleterious(0) probably_damaging(0.98) TCGA-IB-7651-01 14 59942594 59942594 G T L3HYPDH Missense_Mutation p.A311D 0.21 deleterious(0.01) probably_damaging(0.949) TCGA-IB-7651-01 14 59950867 59950867 C A L3HYPDH Missense_Mutation p.Q56H 0.21 deleterious(0.01) benign(0.006) TCGA-IB-7651-01 14 59970602 59970602 A C JKAMP Silent p.R250R 0.18 TCGA-IB-7651-01 14 60063429 60063429 C A RTN1 3'UTR 0.19 TCGA-IB-7651-01 14 60074020 60074020 G A RTN1 Silent p.D652D 0.18 TCGA-IB-7651-01 14 60212623 60212623 C T RTN1 Missense_Mutation p.R273K 0.17 tolerated(0.23) benign(0.013) TCGA-IB-7651-01 14 60574429 60574429 C T PCNXL4 Intron 0.19 TCGA-IB-7651-01 14 60581598 60581598 G A PCNXL4 Splice_Site p.X56_splice 0.18 TCGA-IB-7651-01 14 60585139 60585139 A G PCNXL4 Silent p.Q323Q 0.22 TCGA-IB-7651-01 14 60591135 60591135 C A PCNXL4 Missense_Mutation p.S515Y 0.20 deleterious(0) probably_damaging(0.928) TCGA-IB-7651-01 14 60591214 60591214 G A PCNXL4 Silent p.R541R 0.20 TCGA-IB-7651-01 14 60591898 60591898 G A PCNXL4 Silent p.L769L 0.11 TCGA-IB-7651-01 14 60903473 60903473 G T C14orf39 3'UTR 0.23 TCGA-IB-7651-01 14 60921756 60921756 T C C14orf39 Missense_Mutation p.D489G 0.17 tolerated(0.1) possibly_damaging(0.908) TCGA-IB-7651-01 14 60977961 60977961 C T SIX6 Silent p.C244C 0.08 TCGA-IB-7651-01 14 61115456 61115456 G A SIX1 Missense_Mutation p.P151L 0.17 deleterious(0) probably_damaging(0.916) TCGA-IB-7651-01 14 61180112 61180112 G T SIX4 3'UTR 0.16 TCGA-IB-7651-01 14 61180513 61180513 A G SIX4 Missense_Mutation p.V653A 0.14 tolerated_low_confidence(0.17) benign(0.005) TCGA-IB-7651-01 14 61186709 61186709 C T SIX4 Missense_Mutation p.V440I 0.18 tolerated_low_confidence(0.53) benign(0.001) TCGA-IB-7651-01 14 61439254 61439254 C T TRMT5 3'UTR 0.21 TCGA-IB-7651-01 14 61442419 61442419 C T TRMT5 Silent p.Q406Q 0.19 TCGA-IB-7651-01 14 61446005 61446005 C T TRMT5 Missense_Mutation p.G204E 0.06 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 14 62014512 62014512 G A RP11-47I22.4 Missense_Mutation p.E110K 0.17 tolerated(0.05) probably_damaging(0.995) TCGA-IB-7651-01 14 62207888 62207888 C A HIF1A Missense_Mutation p.S716Y 0.17 deleterious(0.01) benign(0.328) TCGA-IB-7651-01 14 62234006 62234006 C T SNAPC1 Missense_Mutation p.A122V 0.23 tolerated(0.17) possibly_damaging(0.558) TCGA-IB-7651-01 14 62567469 62567469 T C SYT16 3'UTR 0.21 TCGA-IB-7651-01 14 63175128 63175128 G A KCNH5 Missense_Mutation p.R689C 0.22 deleterious(0.03) benign(0.253) TCGA-IB-7651-01 14 63246595 63246595 C T KCNH5 Missense_Mutation p.A624T 0.19 deleterious(0.01) probably_damaging(0.938) TCGA-IB-7651-01 14 63269112 63269112 G A KCNH5 Missense_Mutation p.A586V 0.18 tolerated(0.09) benign(0.183) TCGA-IB-7651-01 14 63269190 63269190 C T KCNH5 Missense_Mutation p.R560H 0.16 deleterious(0) possibly_damaging(0.863) TCGA-IB-7651-01 14 63453898 63453898 C T KCNH5 Silent p.T147T 0.19 TCGA-IB-7651-01 14 63473112 63473112 G T KCNH5 Nonsense_Mutation p.C92* 0.12 TCGA-IB-7651-01 14 64066119 64066119 C T WDR89 Missense_Mutation p.S181N 0.17 tolerated(0.43) benign(0.014) TCGA-IB-7651-01 14 64152848 64152848 A G SGPP1 Missense_Mutation p.I434T 0.19 deleterious(0.02) benign(0.006) TCGA-IB-7651-01 14 64434512 64434512 T C SYNE2 Missense_Mutation p.L359P 0.18 benign(0.003) TCGA-IB-7651-01 14 64496734 64496734 C A SYNE2 Missense_Mutation p.P2279H 0.18 probably_damaging(0.946) TCGA-IB-7651-01 14 64518405 64518405 G A SYNE2 Missense_Mutation p.D2592N 0.20 probably_damaging(0.999) TCGA-IB-7651-01 14 64518467 64518467 G T SYNE2 Missense_Mutation p.Q2612H 0.16 benign(0.046) TCGA-IB-7651-01 14 64519119 64519119 G T SYNE2 Nonsense_Mutation p.E2830* 0.20 TCGA-IB-7651-01 14 64520359 64520359 G T SYNE2 Missense_Mutation p.S3243I 0.15 probably_damaging(0.943) TCGA-IB-7651-01 14 64532244 64532244 G T SYNE2 Missense_Mutation p.G3436V 0.06 possibly_damaging(0.597) TCGA-IB-7651-01 14 64532268 64532268 C T SYNE2 Missense_Mutation p.S3444L 0.23 benign(0.009) TCGA-IB-7651-01 14 64604534 64604534 C T SYNE2 Silent p.H4892H 0.20 TCGA-IB-7651-01 14 64625366 64625366 G A SYNE2 Missense_Mutation p.M5272I 0.17 benign(0.149) TCGA-IB-7651-01 14 64637136 64637136 C T SYNE2 Missense_Mutation p.R5731C 0.17 benign(0.002) TCGA-IB-7651-01 14 64679654 64679654 C T SYNE2 Silent p.L6329L 0.22 TCGA-IB-7651-01 14 64692087 64692087 G A SYNE2 Missense_Mutation p.R6856Q 0.21 probably_damaging(0.939) TCGA-IB-7651-01 14 64727439 64727439 C T ESR2 Missense_Mutation p.R227H 0.21 deleterious(0.04) benign(0.006) TCGA-IB-7651-01 14 64988779 64988779 C T ZBTB1 Missense_Mutation p.P186L 0.21 tolerated(0.11) possibly_damaging(0.617) TCGA-IB-7651-01 14 64998636 64998636 A G RP11-973N13.4 Intron 0.19 TCGA-IB-7651-01 14 65007778 65007778 G A HSPA2 Missense_Mutation p.A71T 0.18 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-IB-7651-01 14 65008035 65008035 C T HSPA2 Silent p.R156R 0.18 TCGA-IB-7651-01 14 65241151 65241151 C T SPTB Missense_Mutation p.R1646Q 0.29 tolerated(0.8) benign(0.047) TCGA-IB-7651-01 14 65249188 65249188 G A SPTB Silent p.D1362D 0.17 TCGA-IB-7651-01 14 65253315 65253315 G A SPTB Missense_Mutation p.S1123F 0.20 tolerated(0.62) benign(0.382) TCGA-IB-7651-01 14 65260266 65260266 C T SPTB Silent p.A705A 0.21 TCGA-IB-7651-01 14 65406150 65406150 C A GPX2 3'UTR 0.16 TCGA-IB-7651-01 14 65409265 65409265 G A GPX2 Silent p.R60R 0.13 TCGA-IB-7651-01 14 67671449 67671449 G A FAM71D Silent p.S185S 0.18 TCGA-IB-7651-01 14 67671472 67671472 T C FAM71D Missense_Mutation p.I193T 0.16 deleterious(0.01) possibly_damaging(0.717) TCGA-IB-7651-01 14 67826421 67826421 C T ATP6V1D 5'UTR 0.08 TCGA-IB-7651-01 14 67940506 67940506 C T TMEM229B Silent p.T45T 0.14 TCGA-IB-7651-01 14 68113681 68113681 G T ARG2 Missense_Mutation p.D221Y 0.16 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 14 68159251 68159251 T G RDH11 Missense_Mutation p.I85L 0.16 tolerated(0.05) probably_damaging(0.986) TCGA-IB-7651-01 14 68215095 68215095 G A ZFYVE26 3'UTR 0.11 TCGA-IB-7651-01 14 68229498 68229498 G T ZFYVE26 Missense_Mutation p.A2017D 0.14 deleterious(0.03) benign(0.109) TCGA-IB-7651-01 14 68229501 68229501 A G ZFYVE26 Missense_Mutation p.V2016A 0.15 deleterious(0) probably_damaging(0.918) TCGA-IB-7651-01 14 68271970 68271970 T C ZFYVE26 Missense_Mutation p.H412R 0.09 deleterious(0.05) possibly_damaging(0.51) TCGA-IB-7651-01 14 69358972 69358972 G A ACTN1 Missense_Mutation p.P295L 0.17 deleterious(0.03) possibly_damaging(0.872) TCGA-IB-7651-01 14 69521423 69521423 A C DCAF5 Missense_Mutation p.I660M 0.18 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-IB-7651-01 14 69695578 69695578 G A EXD2 Missense_Mutation p.A127T 0.09 deleterious(0) probably_damaging(0.955) TCGA-IB-7651-01 14 69922559 69922559 G T SLC39A9 Missense_Mutation p.M223I 0.19 tolerated(0.52) benign(0.015) TCGA-IB-7651-01 14 70252828 70252828 G A SLC10A1 Missense_Mutation p.R185C 0.16 tolerated(0.08) benign(0.021) TCGA-IB-7651-01 14 70252875 70252875 G T SLC10A1 Missense_Mutation p.P169H 0.17 deleterious(0.03) possibly_damaging(0.732) TCGA-IB-7651-01 14 70346414 70346414 G A SMOC1 Missense_Mutation p.A7T 0.15 tolerated_low_confidence(0.22) benign(0.005) TCGA-IB-7651-01 14 70633807 70633807 C T SLC8A3 Missense_Mutation p.D445N 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 14 70924986 70924986 G A ADAM21 Missense_Mutation p.G257E 0.04 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 14 70926319 70926319 C T ADAM21 Silent p.V701V 0.19 TCGA-IB-7651-01 14 70991330 70991330 T G ADAM20 Missense_Mutation p.I99L 0.22 deleterious(0.02) benign(0.006) TCGA-IB-7651-01 14 71109141 71109141 C T TTC9 Missense_Mutation p.R99W 0.17 deleterious(0.01) possibly_damaging(0.522) TCGA-IB-7651-01 14 71134289 71134289 C A TTC9 Missense_Mutation p.L139I 0.19 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 14 71209278 71209278 G A MAP3K9 Missense_Mutation p.R453W 0.17 deleterious(0) probably_damaging(0.924) TCGA-IB-7651-01 14 71267541 71267541 C T MAP3K9 Silent p.E221E 0.14 TCGA-IB-7651-01 14 71267726 71267726 G A MAP3K9 Missense_Mutation p.R160C 0.20 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 14 71540352 71540352 C T PCNX Missense_Mutation p.P1648L 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 14 71575657 71575657 C T PCNX Missense_Mutation p.A2213V 0.08 deleterious_low_confidence(0.01) benign(0.121) TCGA-IB-7651-01 14 72085567 72085567 C T SIPA1L1 Missense_Mutation p.S531F 0.16 tolerated(0.06) benign(0.235) TCGA-IB-7651-01 14 72090900 72090900 G A SIPA1L1 Missense_Mutation p.A589T 0.17 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 14 72152161 72152161 C T SIPA1L1 Nonsense_Mutation p.R1063* 0.19 TCGA-IB-7651-01 14 72165840 72165840 G A SIPA1L1 Missense_Mutation p.E1173K 0.18 tolerated(0.07) benign(0.16) TCGA-IB-7651-01 14 72204965 72204965 G T SIPA1L1 Missense_Mutation p.D1732Y 0.15 deleterious(0) possibly_damaging(0.812) TCGA-IB-7651-01 14 73029253 73029253 G A RGS6 3'Flank 0.14 TCGA-IB-7651-01 14 73159903 73159903 T G DPF3 Missense_Mutation p.K208T 0.15 deleterious(0) possibly_damaging(0.859) TCGA-IB-7651-01 14 73412676 73412676 C A DCAF4 Missense_Mutation p.L207M 0.18 deleterious(0.03) benign(0.094) TCGA-IB-7651-01 14 73437502 73437502 G T ZFYVE1 3'UTR 0.16 TCGA-IB-7651-01 14 73570180 73570180 G A RBM25 Missense_Mutation p.R383Q 0.17 unknown(0) TCGA-IB-7651-01 14 73673163 73673163 C T PSEN1 Missense_Mutation p.S313F 0.20 deleterious(0.02) possibly_damaging(0.513) TCGA-IB-7651-01 14 73720627 73720627 C T PAPLN Silent p.N393N 0.08 TCGA-IB-7651-01 14 73721304 73721304 G A PAPLN Silent p.A435A 0.17 TCGA-IB-7651-01 14 73729383 73729383 C A PAPLN Silent p.L830L 0.12 TCGA-IB-7651-01 14 73730979 73730979 C T PAPLN Silent p.G947G 0.13 TCGA-IB-7651-01 14 73967357 73967357 G A HEATR4 Missense_Mutation p.A728V 0.19 deleterious(0.03) benign(0.094) TCGA-IB-7651-01 14 73989008 73989008 C A HEATR4 Missense_Mutation p.K283N 0.17 tolerated(0.1) benign(0.141) TCGA-IB-7651-01 14 74138242 74138242 C T DNAL1 Intron 0.21 TCGA-IB-7651-01 14 74205659 74205659 C A ELMSAN1 Missense_Mutation p.K351N 0.22 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 14 74433689 74433689 G A ENTPD5 Missense_Mutation p.T410M 0.18 deleterious(0.04) benign(0.271) TCGA-IB-7651-01 14 74538953 74538953 G A ALDH6A1 Missense_Mutation p.R101C 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 14 74753355 74753355 G A ABCD4 Intron 0.20 TCGA-IB-7651-01 14 74824322 74824322 G A VRTN Missense_Mutation p.G279D 0.11 tolerated(0.73) possibly_damaging(0.821) TCGA-IB-7651-01 14 74961670 74961670 C T ISCA2 Silent p.C144C 0.15 TCGA-IB-7651-01 14 74975656 74975656 C T LTBP2 Splice_Site p.X1135_splice 0.22 TCGA-IB-7651-01 14 75130641 75130641 G A AREL1 Missense_Mutation p.A777V 0.06 deleterious(0.04) possibly_damaging(0.781) TCGA-IB-7651-01 14 75140748 75140748 G T AREL1 Missense_Mutation p.P383T 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-IB-7651-01 14 75142502 75142502 G T AREL1 Missense_Mutation p.S327Y 0.19 deleterious(0.01) probably_damaging(0.991) TCGA-IB-7651-01 14 75142633 75142633 G A AREL1 Silent p.I283I 0.18 TCGA-IB-7651-01 14 75284986 75284986 G A YLPM1 Missense_Mutation p.R2000H 0.18 probably_damaging(0.992) TCGA-IB-7651-01 14 75567812 75567812 G A NEK9 Silent p.L629L 0.22 TCGA-IB-7651-01 14 75618848 75618848 T C TMED10 Splice_Site p.X76_splice 0.12 TCGA-IB-7651-01 14 75643079 75643079 G A TMED10 Silent p.G68G 0.23 TCGA-IB-7651-01 14 76012831 76012831 C T BATF Silent p.N65N 0.08 TCGA-IB-7651-01 14 76108229 76108229 A G FLVCR2 Silent p.E499E 0.18 TCGA-IB-7651-01 14 76135778 76135778 T C TTLL5 Missense_Mutation p.W32R 0.04 deleterious(0) possibly_damaging(0.756) TCGA-IB-7651-01 14 76231067 76231067 C T TTLL5 Missense_Mutation p.R554C 0.18 deleterious(0) possibly_damaging(0.556) TCGA-IB-7651-01 14 76248892 76248892 G T TTLL5 Nonsense_Mutation p.E860* 0.18 TCGA-IB-7651-01 14 76620626 76620626 G T GPATCH2L Intron 0.26 TCGA-IB-7651-01 14 76644343 76644343 G A GPATCH2L Silent p.A355A 0.13 TCGA-IB-7651-01 14 76905684 76905684 G A ESRRB Intron 0.04 TCGA-IB-7651-01 14 76905708 76905708 C T ESRRB Silent p.D4D 0.16 TCGA-IB-7651-01 14 77292985 77292985 A G C14orf166B Intron 0.24 TCGA-IB-7651-01 14 77493962 77493962 C T IRF2BPL Silent p.K58K 0.16 TCGA-IB-7651-01 14 77576198 77576198 C T CIPC Silent p.S60S 0.19 TCGA-IB-7651-01 14 77580103 77580103 G A CIPC Silent p.T214T 0.13 TCGA-IB-7651-01 14 77605761 77605761 G A ZDHHC22 Silent p.H107H 0.22 TCGA-IB-7651-01 14 77606018 77606018 T C ZDHHC22 Missense_Mutation p.T22A 0.11 tolerated(0.07) probably_damaging(0.991) TCGA-IB-7651-01 14 77787020 77787020 G A POMT2 Missense_Mutation p.P2L 0.20 deleterious_low_confidence(0.01) benign(0.105) TCGA-IB-7651-01 14 77810118 77810118 G A TMED8 Nonsense_Mutation p.Q126* 0.16 TCGA-IB-7651-01 14 77812773 77812773 C T TMED8 Silent p.R82R 0.15 TCGA-IB-7651-01 14 77857396 77857396 T G SAMD15 Missense_Mutation p.L612V 0.16 deleterious(0.01) benign(0.2) TCGA-IB-7651-01 14 77935698 77935698 C T AHSA1 3'UTR 0.12 TCGA-IB-7651-01 14 77942335 77942335 C T ISM2 Missense_Mutation p.S440N 0.21 deleterious(0.02) benign(0.154) TCGA-IB-7651-01 14 78063618 78063618 C T SPTLC2 Missense_Mutation p.V80I 0.23 tolerated(1) benign(0.002) TCGA-IB-7651-01 14 78142126 78142126 C T ALKBH1 Missense_Mutation p.A205T 0.16 tolerated(0.13) benign(0.081) TCGA-IB-7651-01 14 78189607 78189607 T C SNW1 Silent p.A349A 0.18 TCGA-IB-7651-01 14 78221419 78221419 G T SNW1 Missense_Mutation p.A20D 0.15 tolerated(0.66) benign(0.003) TCGA-IB-7651-01 14 78365490 78365490 G A ADCK1 Missense_Mutation p.M210I 0.19 tolerated(0.14) benign(0.055) TCGA-IB-7651-01 14 78390815 78390815 G T ADCK1 Missense_Mutation p.G292C 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 14 78392209 78392209 G A ADCK1 Missense_Mutation p.G371R 0.17 deleterious(0) possibly_damaging(0.579) TCGA-IB-7651-01 14 79175616 79175616 G A NRXN3 Silent p.A53A 0.17 TCGA-IB-7651-01 14 79175641 79175641 G A NRXN3 Missense_Mutation p.E62K 0.19 tolerated(0.26) possibly_damaging(0.683) TCGA-IB-7651-01 14 79433613 79433613 G A NRXN3 Missense_Mutation p.R574H 0.19 tolerated(0.08) probably_damaging(0.951) TCGA-IB-7651-01 14 79454462 79454462 T C NRXN3 Silent p.Y707Y 0.16 TCGA-IB-7651-01 14 79746562 79746562 G A NRXN3 Intron 0.18 TCGA-IB-7651-01 14 80158534 80158534 G A NRXN3 Intron 0.19 TCGA-IB-7651-01 14 80669213 80669213 C T DIO2 Missense_Mutation p.R250H 0.16 tolerated(0.19) benign(0.01) TCGA-IB-7651-01 14 80669239 80669239 C T DIO2 Silent p.P241P 0.08 TCGA-IB-7651-01 14 81329141 81329141 C T CEP128 Missense_Mutation p.R241H 0.17 tolerated(0.07) benign(0.201) TCGA-IB-7651-01 14 81554371 81554371 C A TSHR Missense_Mutation p.L131I 0.19 deleterious(0) possibly_damaging(0.899) TCGA-IB-7651-01 14 81609439 81609439 C T TSHR Missense_Mutation p.T346I 0.18 tolerated(0.42) benign(0.001) TCGA-IB-7651-01 14 81609861 81609861 G A TSHR Missense_Mutation p.D487N 0.22 deleterious(0.02) benign(0.329) TCGA-IB-7651-01 14 81646534 81646534 T G GTF2A1 3'UTR 0.18 TCGA-IB-7651-01 14 81862432 81862432 G T STON2 Missense_Mutation p.S60Y 0.10 tolerated_low_confidence(0.1) benign(0.299) TCGA-IB-7651-01 14 86088565 86088565 C T FLRT2 Missense_Mutation p.S236L 0.20 deleterious(0) possibly_damaging(0.714) TCGA-IB-7651-01 14 86089311 86089311 C T FLRT2 Missense_Mutation p.P485S 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-IB-7651-01 14 88477128 88477128 A C GPR65 5'UTR 0.22 TCGA-IB-7651-01 14 88478371 88478371 C T GPR65 3'UTR 0.22 TCGA-IB-7651-01 14 88651862 88651862 A T KCNK10 3'UTR 0.19 TCGA-IB-7651-01 14 88652276 88652276 C T KCNK10 Missense_Mutation p.R412H 0.20 tolerated_low_confidence(0.12) benign(0.007) TCGA-IB-7651-01 14 88658693 88658693 C T KCNK10 Missense_Mutation p.G248D 0.15 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 14 88904553 88904553 C T SPATA7 Silent p.D529D 0.13 TCGA-IB-7651-01 14 88946237 88946237 C T PTPN21 Missense_Mutation p.S513N 0.19 tolerated(1) benign(0.001) TCGA-IB-7651-01 14 88983460 88983460 G T PTPN21 Missense_Mutation p.S109Y 0.18 deleterious(0.01) possibly_damaging(0.748) TCGA-IB-7651-01 14 88983472 88983472 A G PTPN21 Missense_Mutation p.V105A 0.18 deleterious(0.02) benign(0.058) TCGA-IB-7651-01 14 89038501 89038501 C T ZC3H14 Silent p.S121S 0.19 TCGA-IB-7651-01 14 89039209 89039209 G A ZC3H14 Missense_Mutation p.S240N 0.18 tolerated(0.22) benign(0.007) TCGA-IB-7651-01 14 89044479 89044479 A G ZC3H14 Missense_Mutation p.N425S 0.17 tolerated(0.73) benign(0.001) TCGA-IB-7651-01 14 89061012 89061012 T A ZC3H14 Intron 0.21 TCGA-IB-7651-01 14 89083140 89083140 C T EML5 Missense_Mutation p.G1909E 0.20 deleterious(0.01) probably_damaging(0.987) TCGA-IB-7651-01 14 89171223 89171223 G A EML5 Nonsense_Mutation p.R678* 0.15 TCGA-IB-7651-01 14 89300058 89300058 G A TTC8 Missense_Mutation p.V46M 0.14 tolerated_low_confidence(0.37) benign(0.001) TCGA-IB-7651-01 14 89307480 89307480 A C TTC8 Missense_Mutation p.R143S 0.08 deleterious(0) probably_damaging(0.974) TCGA-IB-7651-01 14 90263636 90263636 C A EFCAB11 Missense_Mutation p.S148I 0.06 deleterious(0) probably_damaging(0.948) TCGA-IB-7651-01 14 90485729 90485729 C T TDP1 Silent p.Y537Y 0.17 TCGA-IB-7651-01 14 90650476 90650476 C T KCNK13 Missense_Mutation p.A119V 0.19 tolerated(0.22) benign(0.013) TCGA-IB-7651-01 14 90650750 90650750 C A KCNK13 Nonsense_Mutation p.C210* 0.16 TCGA-IB-7651-01 14 90651173 90651173 C T KCNK13 Silent p.D351D 0.16 TCGA-IB-7651-01 14 90735847 90735847 G A PSMC1 Missense_Mutation p.A330T 0.12 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 14 90744551 90744551 T G NRDE2 3'UTR 0.23 TCGA-IB-7651-01 14 90754819 90754819 C A NRDE2 Missense_Mutation p.S967I 0.18 deleterious(0.04) benign(0.211) TCGA-IB-7651-01 14 91044542 91044542 C A TTC7B Missense_Mutation p.A740S 0.21 tolerated(0.13) possibly_damaging(0.892) TCGA-IB-7651-01 14 91211192 91211192 T G TTC7B Missense_Mutation p.T174P 0.04 deleterious(0.01) benign(0.312) TCGA-IB-7651-01 14 91360773 91360773 C A RPS6KA5 Missense_Mutation p.R543M 0.05 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 14 91526692 91526692 C T RPS6KA5 Silent p.K29K 0.27 TCGA-IB-7651-01 14 91749816 91749816 C A CCDC88C Missense_Mutation p.S1496I 0.09 deleterious(0.01) possibly_damaging(0.594) TCGA-IB-7651-01 14 91755667 91755667 G T CCDC88C Missense_Mutation p.A1408D 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 14 91763825 91763825 G T CCDC88C Missense_Mutation p.L1264M 0.28 tolerated(0.08) probably_damaging(0.95) TCGA-IB-7651-01 14 91770280 91770280 C T CCDC88C Missense_Mutation p.A1134T 0.15 tolerated(0.09) benign(0.032) TCGA-IB-7651-01 14 91774720 91774720 C T CCDC88C Missense_Mutation p.R994H 0.15 tolerated(0.24) benign(0.001) TCGA-IB-7651-01 14 91780320 91780320 G A CCDC88C Missense_Mutation p.R614W 0.22 deleterious(0) possibly_damaging(0.462) TCGA-IB-7651-01 14 91804434 91804434 G A CCDC88C Missense_Mutation p.A322V 0.19 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 14 91805638 91805638 G A CCDC88C Missense_Mutation p.R265C 0.24 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 14 91929101 91929101 G A SMEK1 Nonsense_Mutation p.Q638* 0.08 TCGA-IB-7651-01 14 92047229 92047229 G A CATSPERB 3'UTR 0.20 TCGA-IB-7651-01 14 92159477 92159477 C A CATSPERB Missense_Mutation p.S275I 0.14 tolerated(0.41) benign(0) TCGA-IB-7651-01 14 92280104 92280104 C T TC2N Missense_Mutation p.E4K 0.11 deleterious(0) possibly_damaging(0.488) TCGA-IB-7651-01 14 92347762 92347762 T G FBLN5 Missense_Mutation p.D288A 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 14 92353550 92353550 G A FBLN5 Silent p.G242G 0.16 TCGA-IB-7651-01 14 92465608 92465608 G A TRIP11 Missense_Mutation p.S1623F 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 14 92470112 92470112 T C TRIP11 Missense_Mutation p.D1403G 0.19 tolerated(0.06) benign(0.036) TCGA-IB-7651-01 14 92588068 92588068 G A NDUFB1 Silent p.V18V 0.10 TCGA-IB-7651-01 14 92608558 92608558 G A CPSF2 Missense_Mutation p.D238N 0.18 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 14 92609433 92609433 A G CPSF2 Missense_Mutation p.H312R 0.08 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 14 92620736 92620736 T C CPSF2 Missense_Mutation p.L392P 0.27 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 14 92790300 92790300 C A SLC24A4 Missense_Mutation p.S42R 0.16 tolerated_low_confidence(0.49) benign(0.002) TCGA-IB-7651-01 14 92909751 92909751 G A SLC24A4 Missense_Mutation p.R197H 0.19 tolerated(0.55) benign(0.003) TCGA-IB-7651-01 14 93118417 93118417 C T RIN3 Silent p.C341C 0.15 TCGA-IB-7651-01 14 93119069 93119069 C A RIN3 Missense_Mutation p.L559M 0.09 tolerated(0.1) probably_damaging(0.96) TCGA-IB-7651-01 14 93390551 93390551 G A CHGA Silent p.A18A 0.18 TCGA-IB-7651-01 14 93399081 93399081 G A CHGA Missense_Mutation p.R392Q 0.23 tolerated(0.06) benign(0.005) TCGA-IB-7651-01 14 93678410 93678410 C T RP11-371E8.4 Silent p.Y145Y 0.12 TCGA-IB-7651-01 14 93693449 93693449 T C UBR7 3'UTR 0.19 TCGA-IB-7651-01 14 93712552 93712552 G A BTBD7 Silent p.R734R 0.14 TCGA-IB-7651-01 14 93814406 93814406 G A COX8C Silent p.T53T 0.19 TCGA-IB-7651-01 14 94044282 94044282 G A UNC79 Missense_Mutation p.R592H 0.18 tolerated(0.07) benign(0.003) TCGA-IB-7651-01 14 94088131 94088131 C T UNC79 Missense_Mutation p.R1341C 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IB-7651-01 14 94155086 94155086 A G UNC79 Missense_Mutation p.I2191V 0.05 tolerated(0.69) benign(0.004) TCGA-IB-7651-01 14 94170971 94170971 C A UNC79 Missense_Mutation p.L2379M 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-IB-7651-01 14 94187802 94187802 G A PRIMA1 Silent p.N150N 0.21 TCGA-IB-7651-01 14 94395237 94395237 C A FAM181A Silent p.V264V 0.09 TCGA-IB-7651-01 14 94417504 94417504 C T ASB2 Missense_Mutation p.A241T 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 14 94417571 94417571 C T ASB2 Silent p.A218A 0.18 TCGA-IB-7651-01 14 94419708 94419708 C T ASB2 Silent p.P208P 0.16 TCGA-IB-7651-01 14 94526811 94526811 C A DDX24 Missense_Mutation p.A516S 0.17 tolerated(0.06) possibly_damaging(0.532) TCGA-IB-7651-01 14 94545647 94545647 C T DDX24 Missense_Mutation p.V148I 0.07 tolerated(0.24) benign(0.035) TCGA-IB-7651-01 14 94568225 94568225 G A IFI27L1 Missense_Mutation p.A43T 0.19 deleterious(0.02) possibly_damaging(0.798) TCGA-IB-7651-01 14 94582203 94582203 G T IFI27 Missense_Mutation p.K66N 0.15 tolerated(0.08) possibly_damaging(0.728) TCGA-IB-7651-01 14 94711935 94711935 T A PPP4R4 Silent p.A452A 0.17 TCGA-IB-7651-01 14 94725670 94725670 A C PPP4R4 Missense_Mutation p.Q697H 0.16 deleterious(0.05) probably_damaging(0.957) TCGA-IB-7651-01 14 94756575 94756575 G A SERPINA10 Missense_Mutation p.P119L 0.18 deleterious(0.05) benign(0.009) TCGA-IB-7651-01 14 94847322 94847322 T C SERPINA1 Missense_Mutation p.Y268C 0.16 deleterious(0) possibly_damaging(0.864) TCGA-IB-7651-01 14 94933482 94933482 C T SERPINA9 Missense_Mutation p.R307K 0.17 tolerated(0.97) benign(0.066) TCGA-IB-7651-01 14 94962746 94962746 T C SERPINA12 Missense_Mutation p.D290G 0.19 deleterious(0.03) benign(0.175) TCGA-IB-7651-01 14 95054153 95054153 C A SERPINA5 Missense_Mutation p.L152M 0.19 tolerated(0.06) benign(0.156) TCGA-IB-7651-01 14 95054179 95054179 C T SERPINA5 Silent p.T160T 0.14 TCGA-IB-7651-01 14 95056472 95056472 C T SERPINA5 Silent p.R238R 0.17 TCGA-IB-7651-01 14 95109872 95109872 G A SERPINA13P RNA 0.17 TCGA-IB-7651-01 14 95556721 95556721 C A DICER1 3'UTR 0.21 TCGA-IB-7651-01 14 95560313 95560313 T C DICER1 Missense_Mutation p.K1759R 0.19 tolerated(0.59) probably_damaging(0.929) TCGA-IB-7651-01 14 95566220 95566220 C T DICER1 Missense_Mutation p.R1368H 0.20 tolerated(0.39) probably_damaging(0.997) TCGA-IB-7651-01 14 95569987 95569987 T G DICER1 Missense_Mutation p.K1249T 0.18 tolerated_low_confidence(0.48) benign(0.001) TCGA-IB-7651-01 14 95571439 95571439 C T DICER1 Missense_Mutation p.V1080M 0.05 deleterious(0.01) probably_damaging(0.982) TCGA-IB-7651-01 14 95572534 95572534 C T DICER1 Missense_Mutation p.R944Q 0.17 tolerated(0.31) probably_damaging(0.993) TCGA-IB-7651-01 14 95582075 95582075 T C DICER1 Silent p.P612P 0.20 TCGA-IB-7651-01 14 95596505 95596505 C T DICER1 Missense_Mutation p.A155T 0.10 tolerated(0.29) benign(0.081) TCGA-IB-7651-01 14 95921720 95921720 G T SYNE3 Silent p.R377R 0.17 TCGA-IB-7651-01 14 96758421 96758421 G A ATG2B Missense_Mutation p.T1814M 0.17 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 14 96777551 96777551 G A ATG2B Missense_Mutation p.A1355V 0.18 tolerated(0.1) probably_damaging(0.962) TCGA-IB-7651-01 14 96789073 96789073 C A ATG2B Splice_Site p.X847_splice 0.18 TCGA-IB-7651-01 14 96795031 96795031 A C ATG2B Missense_Mutation p.S652A 0.15 tolerated(0.15) benign(0.015) TCGA-IB-7651-01 14 96813603 96813603 A G ATG2B Missense_Mutation p.S80P 0.14 deleterious(0.01) probably_damaging(0.917) TCGA-IB-7651-01 14 96848753 96848753 C T GSKIP Silent p.L57L 0.17 TCGA-IB-7651-01 14 96871122 96871122 G A AK7 Missense_Mutation p.R108H 0.17 tolerated(1) benign(0.001) TCGA-IB-7651-01 14 96887164 96887164 T G AK7 Missense_Mutation p.D168E 0.17 tolerated(0.09) probably_damaging(0.968) TCGA-IB-7651-01 14 97018865 97018865 G A PAPOLA Missense_Mutation p.D524N 0.17 tolerated(0.09) benign(0.053) TCGA-IB-7651-01 14 97029194 97029194 A C PAPOLA Missense_Mutation p.E702D 0.21 tolerated(0.54) benign(0.011) TCGA-IB-7651-01 14 99641019 99641019 C T BCL11B Silent p.S718S 0.22 TCGA-IB-7651-01 14 99697702 99697702 C T BCL11B Missense_Mutation p.G207E 0.21 tolerated(0.09) possibly_damaging(0.645) TCGA-IB-7651-01 14 99697788 99697788 C T BCL11B Silent p.P178P 0.21 TCGA-IB-7651-01 14 99723995 99723995 C A BCL11B Missense_Mutation p.Q80H 0.17 deleterious(0.04) benign(0.023) TCGA-IB-7651-01 14 99959071 99959071 C T CCNK Silent p.H19H 0.14 TCGA-IB-7651-01 14 99976659 99976659 A G CCNK Missense_Mutation p.Y428C 0.09 tolerated_low_confidence(0.11) unknown(0) TCGA-IB-7651-01 15 100185786 100185787 - T MEF2A Frame_Shift_Ins p.G27Wfs*8 0.17 TCGA-IB-7651-01 15 100211654 100211654 G T MEF2A Intron 0.14 TCGA-IB-7651-01 15 100271942 100271942 G A LYSMD4 Missense_Mutation p.R59C 0.10 deleterious(0.02) benign(0.042) TCGA-IB-7651-01 15 100332299 100332299 G T AC090825.1 5'Flank 0.18 TCGA-IB-7651-01 15 100332479 100332479 T C AC090825.1 5'Flank 0.04 TCGA-IB-7651-01 15 100333050 100333050 G T AC090825.1 3'Flank 0.15 TCGA-IB-7651-01 15 100333097 100333097 C A AC090825.1 3'Flank 0.12 TCGA-IB-7651-01 15 100339937 100339937 G A DNM1P46 RNA 0.19 TCGA-IB-7651-01 15 100591811 100591811 G A ADAMTS17 Silent p.S807S 0.18 TCGA-IB-7651-01 15 100739611 100739611 C A ADAMTS17 Missense_Mutation p.G365C 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 15 100821525 100821525 G A ADAMTS17 Missense_Mutation p.T233M 0.24 tolerated(0.21) probably_damaging(0.998) TCGA-IB-7651-01 15 101433995 101433995 C A ALDH1A3 Intron 0.20 TCGA-IB-7651-01 15 101448629 101448629 G A ALDH1A3 Missense_Mutation p.A470T 0.16 tolerated(0.11) benign(0.238) TCGA-IB-7651-01 15 101454999 101454999 C A ALDH1A3 3'UTR 0.22 TCGA-IB-7651-01 15 101464744 101464744 C A LRRK1 5'UTR 0.20 TCGA-IB-7651-01 15 101523781 101523781 C T LRRK1 Missense_Mutation p.R104C 0.17 tolerated(0.15) benign(0.006) TCGA-IB-7651-01 15 101552339 101552339 T C LRRK1 Missense_Mutation p.F470L 0.17 tolerated(0.11) benign(0.029) TCGA-IB-7651-01 15 101602803 101602803 C A LRRK1 Missense_Mutation p.L1608I 0.16 deleterious(0.02) possibly_damaging(0.744) TCGA-IB-7651-01 15 101813029 101813029 C A VIMP Missense_Mutation p.A173S 0.15 tolerated(1) benign(0.026) TCGA-IB-7651-01 15 101933572 101933572 C T PCSK6 Missense_Mutation p.G351R 0.19 tolerated(0.46) benign(0.221) TCGA-IB-7651-01 15 102211926 102211926 A G TARSL2 Missense_Mutation p.F605S 0.18 tolerated(0.09) benign(0.016) TCGA-IB-7651-01 15 102252167 102252167 G A TARSL2 Missense_Mutation p.A243V 0.19 deleterious(0.03) possibly_damaging(0.901) TCGA-IB-7651-01 15 102304767 102304767 C T DNM1P47 RNA 0.11 TCGA-IB-7651-01 15 102305072 102305072 G T DNM1P47 RNA 0.13 TCGA-IB-7651-01 15 102462780 102462780 G T OR4F4 Missense_Mutation p.F161L 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-IB-7651-01 15 20588595 20588595 C T HERC2P3 RNA 0.16 TCGA-IB-7651-01 15 20643866 20643866 G A HERC2P3 RNA 0.12 TCGA-IB-7651-01 15 20643955 20643955 C T HERC2P3 RNA 0.12 TCGA-IB-7651-01 15 20645841 20645841 G A HERC2P3 RNA 0.13 TCGA-IB-7651-01 15 20649486 20649486 C T HERC2P3 RNA 0.08 TCGA-IB-7651-01 15 20649517 20649517 C T HERC2P3 RNA 0.10 TCGA-IB-7651-01 15 22332609 22332609 C T RP11-69H14.6 RNA 0.19 TCGA-IB-7651-01 15 22382753 22382753 A G OR4N4 Missense_Mutation p.Y94C 0.14 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 15 22383287 22383287 C A OR4N4 Missense_Mutation p.S272Y 0.18 deleterious(0.01) probably_damaging(0.981) TCGA-IB-7651-01 15 22473062 22473062 T C IGHV4OR15-8 Missense_Mutation p.E70G 0.11 tolerated(0.33) benign(0) TCGA-IB-7651-01 15 22473122 22473122 C T IGHV4OR15-8 Missense_Mutation p.S50N 0.12 tolerated(0.05) benign(0.006) TCGA-IB-7651-01 15 22709083 22709083 C T AC116165.1 5'Flank 0.08 TCGA-IB-7651-01 15 23002959 23002959 G A CYFIP1 Silent p.K1227K 0.23 TCGA-IB-7651-01 15 23108758 23108758 G A RP11-566K19.6 RNA 0.20 TCGA-IB-7651-01 15 23261073 23261073 G A GOLGA8I Missense_Mutation p.A250T 0.17 deleterious(0.03) probably_damaging(0.944) TCGA-IB-7651-01 15 23299120 23299120 G T HERC2P2 Intron 0.11 TCGA-IB-7651-01 15 23299801 23299801 G A HERC2P2 RNA 0.10 TCGA-IB-7651-01 15 23310029 23310029 G A HERC2P2 RNA 0.21 TCGA-IB-7651-01 15 23410635 23410635 G A RP11-467N20.5 Missense_Mutation p.A185V 0.36 possibly_damaging(0.453) TCGA-IB-7651-01 15 23810940 23810940 C A MKRN3 Missense_Mutation p.P4H 0.14 deleterious(0) unknown(0) TCGA-IB-7651-01 15 23811271 23811271 C A MKRN3 Missense_Mutation p.N114K 0.17 deleterious(0.05) benign(0.031) TCGA-IB-7651-01 15 23812378 23812378 T C MKRN3 Silent p.D483D 0.17 TCGA-IB-7651-01 15 23889232 23889232 G T MAGEL2 Missense_Mutation p.L617I 0.21 deleterious(0.01) benign(0.396) TCGA-IB-7651-01 15 23890438 23890438 G A MAGEL2 Missense_Mutation p.P215S 0.19 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 15 23932430 23932430 G A NDN 5'UTR 0.19 TCGA-IB-7651-01 15 24922482 24922482 G T NPAP1 Missense_Mutation p.A490S 0.18 tolerated(0.05) possibly_damaging(0.55) TCGA-IB-7651-01 15 24922621 24922621 C A NPAP1 Missense_Mutation p.P536H 0.18 deleterious(0.02) probably_damaging(0.982) TCGA-IB-7651-01 15 24922657 24922657 T C NPAP1 Missense_Mutation p.M548T 0.19 tolerated(0.11) benign(0.013) TCGA-IB-7651-01 15 24923233 24923233 C A NPAP1 Missense_Mutation p.A740D 0.18 deleterious(0.05) benign(0.331) TCGA-IB-7651-01 15 24924410 24924410 A C NPAP1 Missense_Mutation p.K1132N 0.19 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-IB-7651-01 15 25221477 25221477 C T SNRPN Missense_Mutation p.R61C 0.14 tolerated(0.06) benign(0.189) TCGA-IB-7651-01 15 25222994 25222994 G T SNRPN Missense_Mutation p.A164S 0.20 tolerated(0.31) probably_damaging(0.935) TCGA-IB-7651-01 15 25227125 25227125 G A SNRPN 3'Flank 0.18 TCGA-IB-7651-01 15 25321120 25321120 C T SNORD116-11 RNA 0.12 TCGA-IB-7651-01 15 25339251 25339251 C T SNORD116-24 RNA 0.19 TCGA-IB-7651-01 15 25423768 25423768 G T SNORD115-6 5'Flank 0.19 TCGA-IB-7651-01 15 25436561 25436561 T C SNORD115-11 3'Flank 0.09 TCGA-IB-7651-01 15 25440072 25440072 C T SNORD115-14 RNA 0.17 TCGA-IB-7651-01 15 25444599 25444599 C T SNORD115-16 RNA 0.15 TCGA-IB-7651-01 15 25449299 25449299 C A SNORD115-20 5'Flank 0.15 TCGA-IB-7651-01 15 25472117 25472117 T C SNORD115-33 5'Flank 0.21 TCGA-IB-7651-01 15 25475840 25475840 G A SNORD115-33 5'Flank 0.17 TCGA-IB-7651-01 15 25486732 25486732 T C SNORD115-40 5'Flank 0.16 TCGA-IB-7651-01 15 25486791 25486791 G A SNORD115-40 5'Flank 0.18 TCGA-IB-7651-01 15 25523494 25523494 C T SNORD109B RNA 0.15 TCGA-IB-7651-01 15 25605662 25605662 C T UBE3A Missense_Mutation p.A544T 0.17 tolerated(0.08) benign(0.267) TCGA-IB-7651-01 15 25616462 25616462 C T UBE3A Missense_Mutation p.V290I 0.15 tolerated(0.34) benign(0.005) TCGA-IB-7651-01 15 25959091 25959091 G A ATP10A Missense_Mutation p.R692W 0.18 tolerated(0.19) possibly_damaging(0.645) TCGA-IB-7651-01 15 25963453 25963453 C T ATP10A Missense_Mutation p.S486N 0.16 tolerated(0.12) benign(0.139) TCGA-IB-7651-01 15 26026197 26026197 C T ATP10A Missense_Mutation p.R208Q 0.04 tolerated(1) benign(0.004) TCGA-IB-7651-01 15 26806166 26806166 G T GABRB3 Missense_Mutation p.F331L 0.17 deleterious(0.04) benign(0.378) TCGA-IB-7651-01 15 26866564 26866564 C T GABRB3 Missense_Mutation p.D120N 0.18 deleterious(0) probably_damaging(0.955) TCGA-IB-7651-01 15 27017577 27017577 C A GABRB3 Missense_Mutation p.S71I 0.20 deleterious(0) benign(0.303) TCGA-IB-7651-01 15 27114471 27114471 A G GABRA5 Missense_Mutation p.S26G 0.19 tolerated_low_confidence(0.38) benign(0) TCGA-IB-7651-01 15 27185073 27185073 C T GABRA5 Silent p.G242G 0.18 TCGA-IB-7651-01 15 27185111 27185111 G T GABRA5 Missense_Mutation p.R255M 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 15 27188450 27188450 G A GABRA5 Nonsense_Mutation p.W322* 0.22 TCGA-IB-7651-01 15 27572106 27572106 G A GABRG3 Missense_Mutation p.A141T 0.20 tolerated(0.1) benign(0.298) TCGA-IB-7651-01 15 28327038 28327038 C A OCA2 5'UTR 0.25 TCGA-IB-7651-01 15 28356873 28356873 G A HERC2 3'UTR 0.21 TCGA-IB-7651-01 15 28357165 28357165 T C HERC2 Missense_Mutation p.N4750S 0.09 possibly_damaging(0.53) TCGA-IB-7651-01 15 28358303 28358303 G A HERC2 Missense_Mutation p.R4716C 0.21 probably_damaging(0.982) TCGA-IB-7651-01 15 28358723 28358723 G A HERC2 Missense_Mutation p.T4672M 0.17 probably_damaging(0.934) TCGA-IB-7651-01 15 28360609 28360609 G T HERC2 Missense_Mutation p.A4563D 0.17 probably_damaging(0.996) TCGA-IB-7651-01 15 28377840 28377840 G T HERC2 Missense_Mutation p.L4123M 0.21 probably_damaging(0.988) TCGA-IB-7651-01 15 28413705 28413705 C T HERC2 Missense_Mutation p.A3421T 0.20 benign(0.003) TCGA-IB-7651-01 15 28446601 28446601 C T HERC2 Splice_Site p.X2572_splice 0.19 TCGA-IB-7651-01 15 28463640 28463640 T G HERC2 Missense_Mutation p.K2008T 0.18 benign(0.027) TCGA-IB-7651-01 15 28473421 28473421 C T HERC2 Missense_Mutation p.D1803N 0.06 benign(0) TCGA-IB-7651-01 15 28510844 28510844 A G HERC2 Missense_Mutation p.V597A 0.17 possibly_damaging(0.732) TCGA-IB-7651-01 15 28510973 28510973 C T HERC2 Silent p.R582R 0.16 TCGA-IB-7651-01 15 28514426 28514426 C T HERC2 Missense_Mutation p.V472M 0.12 benign(0.268) TCGA-IB-7651-01 15 28771529 28771529 G T GOLGA8G Missense_Mutation p.L348M 0.09 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 15 28903890 28903890 G A HERC2P9 RNA 0.10 TCGA-IB-7651-01 15 29092332 29092332 C A GOLGA6L7P RNA 0.26 TCGA-IB-7651-01 15 29093718 29093718 T G GOLGA6L7P RNA 0.18 TCGA-IB-7651-01 15 29385310 29385310 G A APBA2 Missense_Mutation p.D368N 0.09 deleterious(0.02) benign(0.1) TCGA-IB-7651-01 15 29393844 29393844 G A APBA2 Missense_Mutation p.A461T 0.17 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 15 29561540 29561540 G A NDNL2 Missense_Mutation p.P124S 0.15 tolerated(0.39) benign(0.19) TCGA-IB-7651-01 15 30003138 30003138 C A TJP1 Missense_Mutation p.Q1423H 0.18 deleterious_low_confidence(0.04) possibly_damaging(0.873) TCGA-IB-7651-01 15 30010931 30010931 A G TJP1 Missense_Mutation p.S1139P 0.16 tolerated_low_confidence(0.14) benign(0) TCGA-IB-7651-01 15 30011019 30011019 C A TJP1 Missense_Mutation p.Q1109H 0.16 deleterious_low_confidence(0.04) benign(0.003) TCGA-IB-7651-01 15 30012008 30012008 T C TJP1 Silent p.S992S 0.17 TCGA-IB-7651-01 15 30065561 30065561 C A TJP1 Splice_Site p.X29_splice 0.14 TCGA-IB-7651-01 15 30659671 30659671 C T CHRFAM7A Missense_Mutation p.V224M 0.05 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 15 30663349 30663349 G T CHRFAM7A Missense_Mutation p.L188I 0.10 tolerated(0.15) probably_damaging(0.984) TCGA-IB-7651-01 15 30925773 30925773 G A ARHGAP11B Missense_Mutation p.R94H 0.17 deleterious(0) probably_damaging(0.98) TCGA-IB-7651-01 15 30926422 30926422 A G ARHGAP11B Missense_Mutation p.D116G 0.17 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 15 31202973 31202973 C A FAN1 Missense_Mutation p.T511N 0.23 tolerated(0.07) possibly_damaging(0.901) TCGA-IB-7651-01 15 31318431 31318431 G A TRPM1 Silent p.F1197F 0.21 TCGA-IB-7651-01 15 31318444 31318444 C A TRPM1 Missense_Mutation p.R1193M 0.22 deleterious(0.01) benign(0.007) TCGA-IB-7651-01 15 31323236 31323236 T C TRPM1 Missense_Mutation p.Y1043C 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 15 31329913 31329913 C A TRPM1 Splice_Site p.X874_splice 0.20 TCGA-IB-7651-01 15 31362299 31362299 T G TRPM1 Missense_Mutation p.S89R 0.19 tolerated(0.44) benign(0.002) TCGA-IB-7651-01 15 31793994 31793994 G T OTUD7A Missense_Mutation p.P350H 0.17 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 15 31818563 31818563 G A OTUD7A Silent p.G287G 0.17 TCGA-IB-7651-01 15 32929721 32929721 T G ARHGAP11A Missense_Mutation p.I916S 0.16 tolerated(0.11) benign(0.08) TCGA-IB-7651-01 15 33149272 33149272 G T FMN1 Missense_Mutation p.S1068Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 15 33260974 33260974 G A FMN1 Silent p.I753I 0.15 TCGA-IB-7651-01 15 33261570 33261570 G A FMN1 Nonsense_Mutation p.R555* 0.19 TCGA-IB-7651-01 15 33261663 33261663 G A FMN1 Missense_Mutation p.R524W 0.05 deleterious(0) unknown(0) TCGA-IB-7651-01 15 33825537 33825537 G A RYR3 Missense_Mutation p.R127K 0.10 possibly_damaging(0.654) TCGA-IB-7651-01 15 33855181 33855181 A G RYR3 Silent p.K372K 0.17 TCGA-IB-7651-01 15 33872190 33872190 A G RYR3 Missense_Mutation p.T428A 0.15 benign(0) TCGA-IB-7651-01 15 33873841 33873841 C A RYR3 Missense_Mutation p.L524M 0.18 probably_damaging(0.966) TCGA-IB-7651-01 15 33926885 33926885 C T RYR3 Silent p.R1042R 0.21 TCGA-IB-7651-01 15 33926918 33926918 A G RYR3 Silent p.P1053P 0.08 TCGA-IB-7651-01 15 33927881 33927881 C T RYR3 Missense_Mutation p.A1081V 0.16 possibly_damaging(0.813) TCGA-IB-7651-01 15 33954523 33954523 C T RYR3 Missense_Mutation p.L1598F 0.15 probably_damaging(0.924) TCGA-IB-7651-01 15 33954869 33954869 C A RYR3 Missense_Mutation p.P1713H 0.21 probably_damaging(0.992) TCGA-IB-7651-01 15 33955915 33955915 T C RYR3 Missense_Mutation p.F1866L 0.10 probably_damaging(0.916) TCGA-IB-7651-01 15 33988633 33988633 C A RYR3 Silent p.R2025R 0.17 TCGA-IB-7651-01 15 34030740 34030740 G A RYR3 Silent p.L2535L 0.17 TCGA-IB-7651-01 15 34040438 34040438 C T RYR3 Nonsense_Mutation p.R2705* 0.14 TCGA-IB-7651-01 15 34078040 34078040 G T RYR3 Missense_Mutation p.G3149V 0.17 probably_damaging(0.999) TCGA-IB-7651-01 15 34137128 34137128 C T RYR3 Silent p.D4454D 0.20 TCGA-IB-7651-01 15 34137155 34137155 C A RYR3 Missense_Mutation p.F4463L 0.20 benign(0.065) TCGA-IB-7651-01 15 34355142 34355142 C T CHRM5 Missense_Mutation p.A75V 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 15 34355538 34355538 C A CHRM5 Missense_Mutation p.S207Y 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 15 34355722 34355722 G T CHRM5 Missense_Mutation p.Q268H 0.18 tolerated(0.11) benign(0.048) TCGA-IB-7651-01 15 34394945 34394945 C A PGBD4 Silent p.R71R 0.06 TCGA-IB-7651-01 15 34395531 34395531 C T PGBD4 Missense_Mutation p.P267S 0.16 tolerated(0.27) probably_damaging(0.994) TCGA-IB-7651-01 15 34395759 34395759 T C PGBD4 Silent p.L343L 0.18 TCGA-IB-7651-01 15 34440855 34440855 C T KATNBL1 Missense_Mutation p.E179K 0.14 deleterious(0) possibly_damaging(0.676) TCGA-IB-7651-01 15 34520760 34520760 G A EMC4 Silent p.S162S 0.18 TCGA-IB-7651-01 15 34529730 34529730 G A SLC12A6 Missense_Mutation p.R942W 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 15 34531296 34531296 C A SLC12A6 Missense_Mutation p.K834N 0.16 tolerated(1) possibly_damaging(0.881) TCGA-IB-7651-01 15 34532995 34532995 T C SLC12A6 Missense_Mutation p.D768G 0.20 tolerated(0.07) probably_damaging(0.999) TCGA-IB-7651-01 15 34546711 34546711 C T SLC12A6 Missense_Mutation p.R319H 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 15 34640500 34640500 C T NUTM1 Missense_Mutation p.S116L 0.16 tolerated(0.06) benign(0.021) TCGA-IB-7651-01 15 34640559 34640559 G T NUTM1 Missense_Mutation p.A136S 0.13 tolerated(0.06) possibly_damaging(0.728) TCGA-IB-7651-01 15 34648046 34648046 G A NUTM1 Missense_Mutation p.G585R 0.15 deleterious(0.04) benign(0.132) TCGA-IB-7651-01 15 34649317 34649317 G T NUTM1 Missense_Mutation p.K1008N 0.14 tolerated(0.06) benign(0.026) TCGA-IB-7651-01 15 34649395 34649395 G A NUTM1 Silent p.E1034E 0.09 TCGA-IB-7651-01 15 34678849 34678849 G A GOLGA8A Silent p.L88L 0.13 TCGA-IB-7651-01 15 35084354 35084354 C A ACTC1 Missense_Mutation p.V249F 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.861) TCGA-IB-7651-01 15 35196597 35196597 C A AQR Missense_Mutation p.E647D 0.15 tolerated(0.19) benign(0.067) TCGA-IB-7651-01 15 35273720 35273720 T C ZNF770 Missense_Mutation p.K639R 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 15 35275070 35275070 T G ZNF770 Missense_Mutation p.K189T 0.17 tolerated(0.16) benign(0.21) TCGA-IB-7651-01 15 36984338 36984338 C T C15orf41 Silent p.N146N 0.17 TCGA-IB-7651-01 15 37385817 37385817 C T MEIS2 Missense_Mutation p.E202K 0.15 deleterious(0.05) benign(0.007) TCGA-IB-7651-01 15 37390266 37390266 C T MEIS2 Silent p.Q49Q 0.19 TCGA-IB-7651-01 15 38791016 38791016 C A RASGRP1 Nonsense_Mutation p.G618* 0.18 TCGA-IB-7651-01 15 38803860 38803860 C T RASGRP1 Missense_Mutation p.S304N 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 15 39544706 39544706 C T C15orf54 Missense_Mutation p.P124S 0.18 tolerated_low_confidence(0.7) benign(0.025) TCGA-IB-7651-01 15 39885651 39885651 G A THBS1 Missense_Mutation p.E1017K 0.04 tolerated(0.2) benign(0.343) TCGA-IB-7651-01 15 39886550 39886550 C T THBS1 Silent p.I1138I 0.16 TCGA-IB-7651-01 15 40005738 40005738 T G FSIP1 Silent p.G365G 0.17 TCGA-IB-7651-01 15 40018892 40018892 C A FSIP1 Missense_Mutation p.Q316H 0.21 deleterious(0) possibly_damaging(0.896) TCGA-IB-7651-01 15 40269004 40269004 C T EIF2AK4 Silent p.D736D 0.12 TCGA-IB-7651-01 15 40303495 40303495 C T EIF2AK4 Missense_Mutation p.T1236M 0.24 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 15 40494850 40494850 C A BUB1B Silent p.T563T 0.17 TCGA-IB-7651-01 15 40564567 40564567 G A PAK6 Missense_Mutation p.R334H 0.05 tolerated(0.14) benign(0) TCGA-IB-7651-01 15 40583386 40583386 T C PLCB2 Splice_Site p.X957_splice 0.12 TCGA-IB-7651-01 15 40584302 40584302 G T PLCB2 Missense_Mutation p.S830Y 0.18 deleterious(0) possibly_damaging(0.738) TCGA-IB-7651-01 15 40595493 40595493 G A PLCB2 Missense_Mutation p.P76L 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 15 40659920 40659920 G A DISP2 Missense_Mutation p.R536H 0.17 tolerated(0.18) possibly_damaging(0.66) TCGA-IB-7651-01 15 40662041 40662041 G A DISP2 Missense_Mutation p.S1243N 0.18 tolerated(0.27) benign(0.002) TCGA-IB-7651-01 15 40751121 40751121 G A BAHD1 Missense_Mutation p.R153H 0.10 tolerated(0.2) benign(0.002) TCGA-IB-7651-01 15 40751773 40751773 G T BAHD1 Silent p.G370G 0.19 TCGA-IB-7651-01 15 40754438 40754438 G A BAHD1 Missense_Mutation p.R587H 0.18 tolerated(0.07) possibly_damaging(0.904) TCGA-IB-7651-01 15 40764185 40764185 T C CHST14 Missense_Mutation p.V258A 0.20 deleterious(0) possibly_damaging(0.644) TCGA-IB-7651-01 15 40949277 40949277 G T CASC5 Missense_Mutation p.K2200N 0.15 tolerated(0.06) possibly_damaging(0.526) TCGA-IB-7651-01 15 41023465 41023465 C A RAD51 3'UTR 0.18 TCGA-IB-7651-01 15 41029390 41029390 G A RMDN3 Silent p.L431L 0.18 TCGA-IB-7651-01 15 41043684 41043684 C T RMDN3 Missense_Mutation p.S155N 0.20 deleterious(0.01) probably_damaging(0.988) TCGA-IB-7651-01 15 41059447 41059447 C A GCHFR Missense_Mutation p.P52H 0.08 deleterious(0) probably_damaging(0.961) TCGA-IB-7651-01 15 41165267 41165267 A C RHOV Missense_Mutation p.C234G 0.10 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 15 41192523 41192523 C A VPS18 Missense_Mutation p.L503I 0.03 tolerated(0.14) possibly_damaging(0.541) TCGA-IB-7651-01 15 41194882 41194882 G A VPS18 Silent p.L755L 0.06 TCGA-IB-7651-01 15 41275118 41275118 G A INO80 Silent p.A1465A 0.08 TCGA-IB-7651-01 15 41372020 41372020 C T INO80 Missense_Mutation p.R337H 0.18 tolerated(0.06) benign(0.084) TCGA-IB-7651-01 15 41657701 41657701 G A NUSAP1 Silent p.R254R 0.18 TCGA-IB-7651-01 15 41745191 41745191 C A RTF1 Silent p.A134A 0.22 TCGA-IB-7651-01 15 41772926 41772926 G A RTF1 3'UTR 0.21 TCGA-IB-7651-01 15 41805286 41805286 C A LTK Nonsense_Mutation p.E26* 0.17 TCGA-IB-7651-01 15 41814074 41814074 G A RPAP1 Missense_Mutation p.A967V 0.24 tolerated(0.31) benign(0.004) TCGA-IB-7651-01 15 41814317 41814317 T C RPAP1 Silent p.A958A 0.17 TCGA-IB-7651-01 15 41962075 41962075 T C MGA Missense_Mutation p.I328T 0.17 tolerated(0.35) benign(0.007) TCGA-IB-7651-01 15 41991346 41991346 G T MGA Missense_Mutation p.G726V 0.15 tolerated(0.25) benign(0.005) TCGA-IB-7651-01 15 42035217 42035217 A G MGA Missense_Mutation p.T1687A 0.17 deleterious(0.01) benign(0.358) TCGA-IB-7651-01 15 42042630 42042630 G A MGA Silent p.L2275L 0.24 TCGA-IB-7651-01 15 42057138 42057138 C T MGA Missense_Mutation p.P2600L 0.09 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 15 42058209 42058209 C T MGA Silent p.D2643D 0.05 TCGA-IB-7651-01 15 42107871 42107871 A G MAPKBP1 Missense_Mutation p.D462G 0.16 deleterious(0.02) benign(0.053) TCGA-IB-7651-01 15 42116132 42116132 C T MAPKBP1 Silent p.P1368P 0.18 TCGA-IB-7651-01 15 42116688 42116688 C T MAPKBP1 Missense_Mutation p.A1413V 0.19 tolerated(0.2) benign(0.003) TCGA-IB-7651-01 15 42117590 42117590 C T MAPKBP1 Silent p.L1501L 0.15 TCGA-IB-7651-01 15 42135893 42135893 C T PLA2G4B Nonsense_Mutation p.R486* 0.20 TCGA-IB-7651-01 15 42136770 42136770 C T PLA2G4B Silent p.C558C 0.07 TCGA-IB-7651-01 15 42137858 42137858 C T PLA2G4B Silent p.Y691Y 0.07 TCGA-IB-7651-01 15 42162667 42162667 A G SPTBN5 Silent p.L1847L 0.12 TCGA-IB-7651-01 15 42164561 42164561 G A SPTBN5 Missense_Mutation p.R1702C 0.25 possibly_damaging(0.729) TCGA-IB-7651-01 15 42178429 42178429 G A SPTBN5 Missense_Mutation p.R342W 0.18 probably_damaging(0.981) TCGA-IB-7651-01 15 42178435 42178435 C A SPTBN5 Missense_Mutation p.A340S 0.17 benign(0.299) TCGA-IB-7651-01 15 42276014 42276014 G A PLA2G4E Missense_Mutation p.L849F 0.23 deleterious(0.04) benign(0.02) TCGA-IB-7651-01 15 42285034 42285034 G A PLA2G4E Silent p.R457R 0.17 TCGA-IB-7651-01 15 42364020 42364020 C T PLA2G4D Missense_Mutation p.G509R 0.15 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 15 42373813 42373813 C T PLA2G4D Splice_Site p.X274_splice 0.10 TCGA-IB-7651-01 15 42458803 42458803 G A VPS39 Silent p.L522L 0.19 TCGA-IB-7651-01 15 42481361 42481361 G T VPS39 Missense_Mutation p.T98N 0.19 tolerated(0.19) benign(0.234) TCGA-IB-7651-01 15 42521011 42521011 A C TMEM87A Missense_Mutation p.I380S 0.17 tolerated(0.12) possibly_damaging(0.632) TCGA-IB-7651-01 15 42631902 42631902 G A GANC Missense_Mutation p.E627K 0.20 probably_damaging(0.991) TCGA-IB-7651-01 15 42644405 42644405 T G GANC 3'UTR 0.11 TCGA-IB-7651-01 15 42693957 42693957 G A CAPN3 Silent p.K491K 0.21 TCGA-IB-7651-01 15 42695010 42695010 C T CAPN3 Missense_Mutation p.H519Y 0.14 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 15 42702663 42702663 A G CAPN3 Missense_Mutation p.H718R 0.22 tolerated(0.37) benign(0.001) TCGA-IB-7651-01 15 42717205 42717205 T C ZNF106 Missense_Mutation p.I1650V 0.20 tolerated(1) benign(0.02) TCGA-IB-7651-01 15 42740566 42740566 C A ZNF106 Missense_Mutation p.G924C 0.18 tolerated(0.23) benign(0.037) TCGA-IB-7651-01 15 42822003 42822003 C T SNAP23 Nonsense_Mutation p.R186* 0.15 TCGA-IB-7651-01 15 42853482 42853482 A G HAUS2 Missense_Mutation p.T91A 0.18 tolerated(0.82) benign(0.005) TCGA-IB-7651-01 15 43024010 43024010 G A CDAN1 Missense_Mutation p.P516L 0.20 tolerated(0.05) probably_damaging(0.996) TCGA-IB-7651-01 15 43027493 43027493 C A CDAN1 Missense_Mutation p.K341N 0.14 tolerated(0.28) benign(0.311) TCGA-IB-7651-01 15 43027557 43027557 T C CDAN1 Missense_Mutation p.N320S 0.09 tolerated(0.09) probably_damaging(0.979) TCGA-IB-7651-01 15 43027821 43027821 G A CDAN1 Missense_Mutation p.S277L 0.20 tolerated(0.1) benign(0.002) TCGA-IB-7651-01 15 43045264 43045264 C A TTBK2 Missense_Mutation p.R727I 0.09 deleterious_low_confidence(0.03) benign(0.215) TCGA-IB-7651-01 15 43067457 43067457 G T TTBK2 Missense_Mutation p.P625H 0.17 tolerated_low_confidence(0.29) benign(0.006) TCGA-IB-7651-01 15 43351939 43351939 G A UBR1 Missense_Mutation p.R316C 0.18 tolerated(0.06) benign(0.086) TCGA-IB-7651-01 15 43476788 43476788 C T TMEM62 3'UTR 0.22 TCGA-IB-7651-01 15 43527084 43527084 C T TGM5 Silent p.Q586Q 0.15 TCGA-IB-7651-01 15 43571363 43571363 C A TGM7 Missense_Mutation p.M597I 0.16 tolerated(0.66) benign(0.001) TCGA-IB-7651-01 15 43574251 43574251 G A TGM7 Missense_Mutation p.A381V 0.09 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 15 43621480 43621480 C A LCMT2 Missense_Mutation p.S403I 0.19 tolerated(0.35) benign(0.035) TCGA-IB-7651-01 15 43653581 43653581 A C ZSCAN29 Missense_Mutation p.I750S 0.19 deleterious(0.02) probably_damaging(0.993) TCGA-IB-7651-01 15 43672359 43672359 A C TUBGCP4 Missense_Mutation p.E173D 0.16 tolerated(0.19) benign(0.144) TCGA-IB-7651-01 15 43692416 43692416 C T TUBGCP4 Silent p.L531L 0.15 TCGA-IB-7651-01 15 43693986 43693986 C T TUBGCP4 Nonsense_Mutation p.R557* 0.17 TCGA-IB-7651-01 15 43705430 43705430 T G TP53BP1 Missense_Mutation p.K1731T 0.18 tolerated(0.1) probably_damaging(0.979) TCGA-IB-7651-01 15 43708516 43708516 A G TP53BP1 Missense_Mutation p.S1594P 0.18 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 15 43713271 43713271 C T TP53BP1 Missense_Mutation p.R1401H 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 15 43816613 43816613 A G MAP1A Missense_Mutation p.E981G 0.17 probably_damaging(0.999) TCGA-IB-7651-01 15 43816999 43816999 G A MAP1A Missense_Mutation p.G1110S 0.16 benign(0.069) TCGA-IB-7651-01 15 43817488 43817488 T C MAP1A Missense_Mutation p.Y1273H 0.16 possibly_damaging(0.667) TCGA-IB-7651-01 15 43818982 43818982 C T MAP1A Missense_Mutation p.R1771C 0.16 probably_damaging(0.935) TCGA-IB-7651-01 15 43822472 43822472 G T MAP1A 3'UTR 0.21 TCGA-IB-7651-01 15 43822560 43822560 G A MAP1A 3'UTR 0.09 TCGA-IB-7651-01 15 43873540 43873540 G T PPIP5K1 Missense_Mutation p.S275Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 15 43910165 43910165 C T STRC Missense_Mutation p.G152S 0.10 tolerated(0.41) possibly_damaging(0.846) TCGA-IB-7651-01 15 43988490 43988490 C T CKMT1A Missense_Mutation p.R269W 0.13 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 15 43990318 43990318 T C CKMT1A Missense_Mutation p.V328A 0.16 deleterious(0.04) probably_damaging(0.968) TCGA-IB-7651-01 15 44037246 44037246 G T PDIA3 5'Flank 0.18 TCGA-IB-7651-01 15 44059072 44059072 C A PDIA3 Missense_Mutation p.A331D 0.04 tolerated(0.29) benign(0.013) TCGA-IB-7651-01 15 44062493 44062493 G A PDIA3 Missense_Mutation p.A438T 0.18 tolerated(0.06) probably_damaging(0.991) TCGA-IB-7651-01 15 44088365 44088365 G A SERINC4 Silent p.S376S 0.15 TCGA-IB-7651-01 15 44184228 44184228 A C FRMD5 Missense_Mutation p.F227V 0.18 tolerated(0.39) benign(0.422) TCGA-IB-7651-01 15 44216429 44216429 G A FRMD5 Missense_Mutation p.R61C 0.17 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 15 44581358 44581358 A C CASC4 Missense_Mutation p.E44A 0.19 deleterious(0.02) probably_damaging(0.938) TCGA-IB-7651-01 15 44695169 44695169 T C CASC4 Missense_Mutation p.V386A 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-IB-7651-01 15 44855412 44855412 C T SPG11 Silent p.K2413K 0.22 TCGA-IB-7651-01 15 45059546 45059546 G A TRIM69 Missense_Mutation p.R360K 0.17 deleterious(0.03) probably_damaging(0.951) TCGA-IB-7651-01 15 45408806 45408806 G A DUOXA2 Missense_Mutation p.A145T 0.19 deleterious(0) probably_damaging(0.958) TCGA-IB-7651-01 15 45431796 45431796 C T DUOX1 Missense_Mutation p.T463I 0.17 tolerated(0.08) benign(0.005) TCGA-IB-7651-01 15 45444185 45444185 G A DUOX1 Missense_Mutation p.R1043H 0.16 deleterious(0.01) possibly_damaging(0.84) TCGA-IB-7651-01 15 45453117 45453117 G T DUOX1 Missense_Mutation p.G1262V 0.20 tolerated(0.24) benign(0.027) TCGA-IB-7651-01 15 45455749 45455749 C T DUOX1 Missense_Mutation p.T1423M 0.14 deleterious(0) probably_damaging(0.984) TCGA-IB-7651-01 15 45455883 45455883 C A DUOX1 Missense_Mutation p.L1468M 0.19 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 15 45983304 45983304 G A SQRDL 3'UTR 0.19 TCGA-IB-7651-01 15 48055280 48055280 C T SEMA6D Silent p.V242V 0.14 TCGA-IB-7651-01 15 48056061 48056061 C T SEMA6D Silent p.R254R 0.19 TCGA-IB-7651-01 15 48064076 48064076 T C SEMA6D 3'UTR 0.13 TCGA-IB-7651-01 15 48414088 48414088 G A SLC24A5 Silent p.S52S 0.18 TCGA-IB-7651-01 15 48414324 48414324 A G SLC24A5 Intron 0.20 TCGA-IB-7651-01 15 48426538 48426538 G A SLC24A5 Missense_Mutation p.G129S 0.16 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 15 48441415 48441415 C T MYEF2 Missense_Mutation p.G511E 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 15 48537060 48537060 C T SLC12A1 Nonsense_Mutation p.R471* 0.15 TCGA-IB-7651-01 15 48628255 48628255 G A DUT Missense_Mutation p.G175D 0.17 deleterious(0.01) probably_damaging(0.989) TCGA-IB-7651-01 15 48703398 48703398 C T FBN1 Missense_Mutation p.G2802D 0.08 possibly_damaging(0.814) TCGA-IB-7651-01 15 48718062 48718062 C A FBN1 Splice_Site p.X2402_splice 0.15 TCGA-IB-7651-01 15 48720570 48720570 C T FBN1 Missense_Mutation p.A2324T 0.09 benign(0.042) TCGA-IB-7651-01 15 48760266 48760266 C T FBN1 Missense_Mutation p.R1539Q 0.19 benign(0.001) TCGA-IB-7651-01 15 48779354 48779354 G A FBN1 Silent p.G1169G 0.16 TCGA-IB-7651-01 15 48779509 48779509 C T FBN1 Missense_Mutation p.D1155N 0.20 probably_damaging(0.987) TCGA-IB-7651-01 15 48779598 48779598 C T FBN1 Missense_Mutation p.R1125Q 0.18 probably_damaging(0.999) TCGA-IB-7651-01 15 48787772 48787772 G A FBN1 Silent p.C811C 0.16 TCGA-IB-7651-01 15 48812972 48812972 C T FBN1 Missense_Mutation p.R344H 0.18 probably_damaging(0.966) TCGA-IB-7651-01 15 48905247 48905247 A G FBN1 Silent p.P69P 0.18 TCGA-IB-7651-01 15 49030524 49030524 C A CEP152 Missense_Mutation p.Q1685H 0.11 tolerated(0.09) possibly_damaging(0.889) TCGA-IB-7651-01 15 49054658 49054658 G T CEP152 Missense_Mutation p.A831D 0.19 deleterious(0.01) probably_damaging(0.99) TCGA-IB-7651-01 15 49059316 49059316 C T CEP152 Missense_Mutation p.D741N 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-IB-7651-01 15 49064749 49064749 C A CEP152 Missense_Mutation p.D573Y 0.15 deleterious(0) possibly_damaging(0.896) TCGA-IB-7651-01 15 49064762 49064762 T C CEP152 Silent p.Q568Q 0.15 TCGA-IB-7651-01 15 49064784 49064784 C T CEP152 Missense_Mutation p.R561H 0.14 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 15 49081138 49081138 C T CEP152 Missense_Mutation p.D345N 0.16 deleterious(0) benign(0.245) TCGA-IB-7651-01 15 49089912 49089912 C T CEP152 Silent p.E69E 0.19 TCGA-IB-7651-01 15 49135605 49135605 C T SHC4 Splice_Site p.X495_splice 0.16 TCGA-IB-7651-01 15 49255234 49255234 G A SHC4 5'UTR 0.08 TCGA-IB-7651-01 15 49308835 49308835 T C SECISBP2L Missense_Mutation p.M495V 0.17 deleterious(0.02) possibly_damaging(0.874) TCGA-IB-7651-01 15 49320695 49320695 C T SECISBP2L Silent p.Q283Q 0.19 TCGA-IB-7651-01 15 49431799 49431799 G A COPS2 Missense_Mutation p.R100W 0.07 deleterious(0) possibly_damaging(0.757) TCGA-IB-7651-01 15 49860490 49860490 C T FAM227B Silent p.V233V 0.18 TCGA-IB-7651-01 15 49867255 49867255 C T FAM227B Missense_Mutation p.A200T 0.16 deleterious(0) possibly_damaging(0.902) TCGA-IB-7651-01 15 49868971 49868971 A C FAM227B Missense_Mutation p.I171M 0.19 tolerated(0.09) benign(0.245) TCGA-IB-7651-01 15 49917327 49917327 T C DTWD1 5'UTR 0.15 TCGA-IB-7651-01 15 50209130 50209130 C A ATP8B4 Splice_Site p.X714_splice 0.20 TCGA-IB-7651-01 15 50339654 50339654 C T ATP8B4 Missense_Mutation p.R32H 0.40 tolerated(0.52) benign(0.003) TCGA-IB-7651-01 15 50534865 50534865 C T HDC Silent p.Q527Q 0.21 TCGA-IB-7651-01 15 50786282 50786282 G A USP8 Silent p.G821G 0.11 TCGA-IB-7651-01 15 50788095 50788095 C T USP8 Silent p.D903D 0.16 TCGA-IB-7651-01 15 50822088 50822088 G A USP50 Missense_Mutation p.T281M 0.18 deleterious(0.02) possibly_damaging(0.719) TCGA-IB-7651-01 15 50838796 50838796 G T USP50 5'UTR 0.08 TCGA-IB-7651-01 15 50901842 50901842 A C TRPM7 Missense_Mutation p.L839R 0.17 deleterious(0.01) possibly_damaging(0.786) TCGA-IB-7651-01 15 51207651 51207651 A T AP4E1 Missense_Mutation p.M77L 0.17 tolerated(0.07) benign(0.026) TCGA-IB-7651-01 15 51223034 51223034 G A AP4E1 Silent p.G245G 0.16 TCGA-IB-7651-01 15 51289963 51289963 G A AP4E1 Silent p.V929V 0.17 TCGA-IB-7651-01 15 51293373 51293373 G T AP4E1 Missense_Mutation p.E1082D 0.18 tolerated(1) benign(0.013) TCGA-IB-7651-01 15 51350473 51350473 C A TNFAIP8L3 Missense_Mutation p.A162S 0.13 tolerated(0.09) probably_damaging(0.945) TCGA-IB-7651-01 15 51529135 51529135 C T CYP19A1 Missense_Mutation p.A73T 0.20 deleterious(0.01) benign(0.327) TCGA-IB-7651-01 15 51535162 51535162 G A CYP19A1 Intron 0.20 TCGA-IB-7651-01 15 51693790 51693790 G T GLDN Missense_Mutation p.G343V 0.09 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 15 51696637 51696637 C A GLDN Missense_Mutation p.L448I 0.09 tolerated(0.29) benign(0.034) TCGA-IB-7651-01 15 51750948 51750948 G T DMXL2 Silent p.I2657I 0.16 TCGA-IB-7651-01 15 51772901 51772901 C T DMXL2 Silent p.L2134L 0.18 TCGA-IB-7651-01 15 51791720 51791720 C T DMXL2 Missense_Mutation p.R1234K 0.17 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 15 51860756 51860756 C A DMXL2 Splice_Site p.X72_splice 0.22 TCGA-IB-7651-01 15 51975574 51975574 C T SCG3 Nonsense_Mutation p.R114* 0.14 TCGA-IB-7651-01 15 52338703 52338703 C T MAPK6 Silent p.L16L 0.09 TCGA-IB-7651-01 15 52338767 52338767 C T MAPK6 Missense_Mutation p.A37V 0.04 deleterious(0.02) possibly_damaging(0.448) TCGA-IB-7651-01 15 52425618 52425618 C T GNB5 Missense_Mutation p.V274M 0.15 deleterious(0.04) probably_damaging(0.914) TCGA-IB-7651-01 15 52513390 52513390 G A MYO5C Silent p.I1230I 0.13 TCGA-IB-7651-01 15 52539194 52539194 G T MYO5C Nonsense_Mutation p.Y633* 0.15 TCGA-IB-7651-01 15 52901191 52901191 C T FAM214A Silent p.Q640Q 0.21 TCGA-IB-7651-01 15 52901701 52901701 C T FAM214A Silent p.E470E 0.18 TCGA-IB-7651-01 15 52902196 52902196 G A FAM214A Silent p.G305G 0.11 TCGA-IB-7651-01 15 53809847 53809847 T C WDR72 3'UTR 0.09 TCGA-IB-7651-01 15 53815426 53815426 G A WDR72 Missense_Mutation p.S1081F 0.16 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 15 53889435 53889435 C T WDR72 Missense_Mutation p.V997I 0.04 tolerated(0.11) possibly_damaging(0.638) TCGA-IB-7651-01 15 53908400 53908400 A G WDR72 Missense_Mutation p.L668S 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-IB-7651-01 15 54306705 54306705 G A UNC13C Nonsense_Mutation p.W535* 0.21 TCGA-IB-7651-01 15 54307992 54307992 G T UNC13C Missense_Mutation p.K964N 0.23 tolerated_low_confidence(0.09) benign(0.157) TCGA-IB-7651-01 15 54527296 54527296 T C UNC13C Missense_Mutation p.V1047A 0.19 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-IB-7651-01 15 54556523 54556523 G A UNC13C Silent p.Q1202Q 0.16 TCGA-IB-7651-01 15 54586236 54586236 G A UNC13C Missense_Mutation p.G1321E 0.17 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-IB-7651-01 15 54626001 54626001 G A UNC13C Missense_Mutation p.D1511N 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-IB-7651-01 15 54825191 54825191 A C UNC13C Missense_Mutation p.T1875P 0.14 tolerated_low_confidence(0.73) benign(0.001) TCGA-IB-7651-01 15 55483181 55483181 T A RSL24D1 Missense_Mutation p.N87I 0.17 tolerated(0.07) benign(0.352) TCGA-IB-7651-01 15 55516100 55516100 C T RAB27A Missense_Mutation p.A152T 0.17 deleterious(0.02) benign(0.326) TCGA-IB-7651-01 15 55613553 55613553 C A PIGB Missense_Mutation p.L128I 0.17 deleterious(0.02) probably_damaging(0.944) TCGA-IB-7651-01 15 55912364 55912364 C T PRTG Missense_Mutation p.S1100N 0.15 tolerated_low_confidence(0.1) benign(0.002) TCGA-IB-7651-01 15 55964735 55964735 C T PRTG Missense_Mutation p.G650D 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 15 55965763 55965763 C T PRTG Missense_Mutation p.R553H 0.16 deleterious(0.01) benign(0.262) TCGA-IB-7651-01 15 55972411 55972411 C A PRTG Splice_Site p.X272_splice 0.20 TCGA-IB-7651-01 15 56132913 56132913 G A NEDD4 Silent p.T964T 0.08 TCGA-IB-7651-01 15 56139215 56139215 C A NEDD4 Missense_Mutation p.R867S 0.16 deleterious(0) probably_damaging(0.961) TCGA-IB-7651-01 15 56385880 56385880 G A RFX7 Missense_Mutation p.T1349I 0.14 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-IB-7651-01 15 56388340 56388340 G A RFX7 Missense_Mutation p.A529V 0.22 tolerated_low_confidence(0.79) benign(0.001) TCGA-IB-7651-01 15 56923986 56923986 A G ZNF280D Silent p.L884L 0.17 TCGA-IB-7651-01 15 56958693 56958693 C T ZNF280D Missense_Mutation p.E632K 0.19 tolerated(0.42) possibly_damaging(0.699) TCGA-IB-7651-01 15 56985325 56985325 T C ZNF280D Missense_Mutation p.Y157C 0.18 tolerated(0.1) probably_damaging(0.957) TCGA-IB-7651-01 15 57731164 57731164 G A CGNL1 Missense_Mutation p.A323T 0.17 tolerated(0.09) possibly_damaging(0.53) TCGA-IB-7651-01 15 57754064 57754064 A C CGNL1 Silent p.R793R 0.15 TCGA-IB-7651-01 15 57913875 57913875 C T MYZAP Nonsense_Mutation p.R130* 0.17 TCGA-IB-7651-01 15 59064120 59064120 C A FAM63B Missense_Mutation p.L176M 0.15 deleterious_low_confidence(0.01) probably_damaging(0.961) TCGA-IB-7651-01 15 59323801 59323801 C T RNF111 Silent p.D260D 0.16 TCGA-IB-7651-01 15 59344625 59344625 C T RNF111 Silent p.S334S 0.21 TCGA-IB-7651-01 15 59368362 59368362 G T RNF111 Missense_Mutation p.Q632H 0.15 tolerated_low_confidence(0.12) benign(0.348) TCGA-IB-7651-01 15 59399591 59399591 G A CCNB2 Missense_Mutation p.R32Q 0.19 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 15 59417083 59417083 G A CCNB2 3'UTR 0.12 TCGA-IB-7651-01 15 59911797 59911797 T C GCNT3 3'UTR 0.17 TCGA-IB-7651-01 15 59964895 59964895 G A BNIP2 Silent p.V293V 0.13 TCGA-IB-7651-01 15 60297560 60297560 C T FOXB1 Missense_Mutation p.A133V 0.18 tolerated(0.14) benign(0.036) TCGA-IB-7651-01 15 60724161 60724161 G A NARG2 Missense_Mutation p.L845F 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 15 60741867 60741867 T G NARG2 Silent p.T433T 0.21 TCGA-IB-7651-01 15 60748989 60748989 A C NARG2 Missense_Mutation p.I178S 0.14 deleterious(0.02) benign(0.007) TCGA-IB-7651-01 15 60803641 60803641 T C RORA Missense_Mutation p.N235D 0.08 tolerated(0.34) benign(0) TCGA-IB-7651-01 15 62165457 62165457 C A VPS13C Missense_Mutation p.K3522N 0.19 deleterious(0) probably_damaging(0.962) TCGA-IB-7651-01 15 62264895 62264895 C T VPS13C Missense_Mutation p.E896K 0.17 tolerated(0.94) benign(0.017) TCGA-IB-7651-01 15 62283994 62283994 C A VPS13C Missense_Mutation p.R454L 0.11 deleterious(0) possibly_damaging(0.805) TCGA-IB-7651-01 15 63019326 63019326 C T TLN2 Missense_Mutation p.A1099V 0.16 tolerated(0.19) benign(0.007) TCGA-IB-7651-01 15 63029241 63029241 C T TLN2 Silent p.L1175L 0.08 TCGA-IB-7651-01 15 63084884 63084884 C A TLN2 Silent p.G1927G 0.21 TCGA-IB-7651-01 15 63356268 63356268 C T TPM1 Intron 0.15 TCGA-IB-7651-01 15 63551873 63551873 C T RAB8B Silent p.S154S 0.15 TCGA-IB-7651-01 15 63618305 63618305 C T CA12 3'UTR 0.33 TCGA-IB-7651-01 15 63916522 63916522 C T HERC1 Missense_Mutation p.S4427N 0.15 benign(0.345) TCGA-IB-7651-01 15 63920906 63920906 T C HERC1 Missense_Mutation p.T4359A 0.20 benign(0.11) TCGA-IB-7651-01 15 63935242 63935242 G A HERC1 Nonsense_Mutation p.Q3783* 0.17 TCGA-IB-7651-01 15 63967220 63967220 C T HERC1 Silent p.T2389T 0.18 TCGA-IB-7651-01 15 64017505 64017505 T G HERC1 Missense_Mutation p.D1185A 0.16 benign(0.031) TCGA-IB-7651-01 15 64019960 64019960 C T HERC1 Missense_Mutation p.A1078T 0.12 benign(0.082) TCGA-IB-7651-01 15 64025296 64025296 C T HERC1 Missense_Mutation p.V899I 0.17 benign(0.127) TCGA-IB-7651-01 15 64050478 64050478 C T HERC1 Missense_Mutation p.E373K 0.20 possibly_damaging(0.896) TCGA-IB-7651-01 15 64380897 64380897 G A FAM96A Missense_Mutation p.A93V 0.21 deleterious(0.01) benign(0.313) TCGA-IB-7651-01 15 64404870 64404870 G T SNX1 Missense_Mutation p.Q86H 0.19 deleterious(0.01) possibly_damaging(0.605) TCGA-IB-7651-01 15 64448127 64448127 C T PPIB 3'UTR 0.17 TCGA-IB-7651-01 15 64673670 64673670 T A KIAA0101 5'UTR 0.21 TCGA-IB-7651-01 15 64962610 64962610 C T ZNF609 Nonsense_Mutation p.R347* 0.16 TCGA-IB-7651-01 15 65108464 65108464 G T PIF1 3'UTR 0.26 TCGA-IB-7651-01 15 65112092 65112092 C A PIF1 Missense_Mutation p.Q429H 0.04 deleterious(0.02) probably_damaging(0.996) TCGA-IB-7651-01 15 65157620 65157620 C T PLEKHO2 Missense_Mutation p.P336S 0.16 tolerated(0.26) benign(0.022) TCGA-IB-7651-01 15 65236846 65236846 C T ANKDD1A Intron 0.17 TCGA-IB-7651-01 15 65236895 65236895 G T ANKDD1A Missense_Mutation p.S371I 0.09 tolerated(0.4) possibly_damaging(0.493) TCGA-IB-7651-01 15 65316129 65316129 G A MTFMT Silent p.G141G 0.26 TCGA-IB-7651-01 15 65448058 65448058 C T CLPX Missense_Mutation p.R428K 0.19 tolerated(0.66) benign(0.401) TCGA-IB-7651-01 15 65555562 65555562 C T PARP16 Missense_Mutation p.G206S 0.16 deleterious(0) probably_damaging(0.953) TCGA-IB-7651-01 15 65578689 65578689 G A PARP16 Missense_Mutation p.L26F 0.16 tolerated(0.11) benign(0.134) TCGA-IB-7651-01 15 65623869 65623869 G T IGDCC3 Missense_Mutation p.P426H 0.24 deleterious(0) probably_damaging(0.984) TCGA-IB-7651-01 15 65678349 65678349 C T IGDCC4 Silent p.A1000A 0.17 TCGA-IB-7651-01 15 65682504 65682504 G T IGDCC4 Silent p.T799T 0.14 TCGA-IB-7651-01 15 65688258 65688258 G A IGDCC4 Missense_Mutation p.A414V 0.23 tolerated(0.46) probably_damaging(0.977) TCGA-IB-7651-01 15 65688350 65688350 G A IGDCC4 Silent p.V383V 0.20 TCGA-IB-7651-01 15 65694733 65694733 C T IGDCC4 Missense_Mutation p.R219H 0.21 tolerated(0.43) benign(0.005) TCGA-IB-7651-01 15 65892120 65892120 A G VWA9 Silent p.L103L 0.17 TCGA-IB-7651-01 15 65918300 65918300 C A SLC24A1 Missense_Mutation p.L628I 0.18 possibly_damaging(0.636) TCGA-IB-7651-01 15 65962264 65962264 C A DENND4A Splice_Site p.X1546_splice 0.21 TCGA-IB-7651-01 15 65982789 65982789 C A DENND4A Missense_Mutation p.W1380C 0.14 deleterious(0) probably_damaging(0.912) TCGA-IB-7651-01 15 66007885 66007885 G T DENND4A Missense_Mutation p.F628L 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 15 66031062 66031062 A G DENND4A Silent p.T261T 0.18 TCGA-IB-7651-01 15 66044893 66044893 C T DENND4A Missense_Mutation p.A129T 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 15 66170283 66170283 A T RAB11A Missense_Mutation p.R140S 0.16 deleterious_low_confidence(0.05) benign(0.177) TCGA-IB-7651-01 15 66190303 66190303 G A MEGF11 Missense_Mutation p.A1035V 0.17 tolerated(0.19) benign(0.024) TCGA-IB-7651-01 15 66190367 66190367 C T MEGF11 Missense_Mutation p.D1014N 0.16 deleterious(0.02) benign(0.008) TCGA-IB-7651-01 15 66633578 66633578 C T TIPIN Missense_Mutation p.E198K 0.09 deleterious(0) probably_damaging(0.967) TCGA-IB-7651-01 15 66729129 66729129 A C MAP2K1 Silent p.R113R 0.16 TCGA-IB-7651-01 15 66791951 66791951 C T RPL4 Missense_Mutation p.A360T 0.06 tolerated(0.14) benign(0.002) TCGA-IB-7651-01 15 66794186 66794186 C A RPL4 Missense_Mutation p.K162N 0.08 tolerated(0.09) benign(0.349) TCGA-IB-7651-01 15 66807941 66807941 C T ZWILCH Silent p.G93G 0.15 TCGA-IB-7651-01 15 66857032 66857032 G A LCTL Silent p.D88D 0.21 TCGA-IB-7651-01 15 67524224 67524224 C T AAGAB Missense_Mutation p.E155K 0.18 deleterious(0) possibly_damaging(0.908) TCGA-IB-7651-01 15 67665742 67665742 G T IQCH Missense_Mutation p.R448M 0.19 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 15 67768123 67768123 C A IQCH Silent p.I922I 0.21 TCGA-IB-7651-01 15 68118532 68118532 C A SKOR1 Silent p.A308A 0.16 TCGA-IB-7651-01 15 68479934 68479934 G T PIAS1 Missense_Mutation p.D573Y 0.17 deleterious_low_confidence(0) benign(0.394) TCGA-IB-7651-01 15 68479978 68479978 G A PIAS1 Silent p.Q587Q 0.18 TCGA-IB-7651-01 15 68500697 68500697 G A CLN6 Silent p.F239F 0.15 TCGA-IB-7651-01 15 68937536 68937536 G A CORO2B Missense_Mutation p.R18Q 0.20 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 15 69018383 69018383 C T CORO2B 3'UTR 0.24 TCGA-IB-7651-01 15 69222960 69222960 C T SPESP1 5'UTR 0.14 TCGA-IB-7651-01 15 69238882 69238882 A G SPESP1 Missense_Mutation p.M337V 0.22 deleterious(0.01) benign(0.001) TCGA-IB-7651-01 15 69323949 69323949 C A NOX5 Silent p.G139G 0.18 TCGA-IB-7651-01 15 69324134 69324134 T C NOX5 Missense_Mutation p.M201T 0.18 tolerated(0.05) benign(0.01) TCGA-IB-7651-01 15 69325509 69325509 C T NOX5 Silent p.H249H 0.31 TCGA-IB-7651-01 15 69348991 69348991 C T NOX5 Silent p.G751G 0.22 TCGA-IB-7651-01 15 69696207 69696207 A C PAQR5 3'UTR 0.09 TCGA-IB-7651-01 15 69718750 69718750 A C KIF23 Missense_Mutation p.K308T 0.20 deleterious(0) possibly_damaging(0.816) TCGA-IB-7651-01 15 70353110 70353110 C T TLE3 Intron 0.16 TCGA-IB-7651-01 15 70358362 70358362 C T TLE3 Missense_Mutation p.D190N 0.14 tolerated(0.15) benign(0.1) TCGA-IB-7651-01 15 70949320 70949320 G T UACA 3'UTR 0.14 TCGA-IB-7651-01 15 70969475 70969475 A C UACA Missense_Mutation p.V335G 0.19 tolerated(0.09) possibly_damaging(0.811) TCGA-IB-7651-01 15 70970491 70970491 C A UACA Nonsense_Mutation p.E316* 0.06 TCGA-IB-7651-01 15 70970515 70970515 C T UACA Missense_Mutation p.E308K 0.15 deleterious(0.01) benign(0.297) TCGA-IB-7651-01 15 71174954 71174954 G A THAP10 Silent p.L205L 0.21 TCGA-IB-7651-01 15 71188217 71188217 G A LRRC49 Silent p.S50S 0.21 TCGA-IB-7651-01 15 71276472 71276472 T C LRRC49 Missense_Mutation p.W354R 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 15 72039244 72039244 C T THSD4 Silent p.L702L 0.21 TCGA-IB-7651-01 15 72103910 72103910 G A NR2E3 RNA 0.13 TCGA-IB-7651-01 15 72119059 72119059 C A MYO9A Missense_Mutation p.K2503N 0.16 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-IB-7651-01 15 72119296 72119296 G A MYO9A Silent p.D2424D 0.17 TCGA-IB-7651-01 15 72146772 72146772 G A MYO9A Nonsense_Mutation p.R2098* 0.18 TCGA-IB-7651-01 15 72146819 72146819 A T MYO9A Missense_Mutation p.L2082H 0.18 deleterious(0) probably_damaging(0.94) TCGA-IB-7651-01 15 72176078 72176078 C T MYO9A Splice_Site p.X1752_splice 0.17 TCGA-IB-7651-01 15 72191130 72191130 G A MYO9A Silent p.A1238A 0.18 TCGA-IB-7651-01 15 72192062 72192062 G A MYO9A Nonsense_Mutation p.Q1146* 0.19 TCGA-IB-7651-01 15 72208782 72208782 C T MYO9A Missense_Mutation p.D872N 0.22 deleterious(0.03) possibly_damaging(0.833) TCGA-IB-7651-01 15 72286859 72286859 C T MYO9A Missense_Mutation p.R513Q 0.19 tolerated(0.1) possibly_damaging(0.459) TCGA-IB-7651-01 15 72338363 72338363 C A MYO9A Missense_Mutation p.S181I 0.20 deleterious(0) probably_damaging(0.969) TCGA-IB-7651-01 15 72432323 72432323 C T SENP8 Missense_Mutation p.S120F 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 15 72432577 72432577 C A SENP8 Missense_Mutation p.L205I 0.12 tolerated(0.33) possibly_damaging(0.873) TCGA-IB-7651-01 15 72455661 72455661 C T GRAMD2 Missense_Mutation p.S301N 0.09 tolerated(0.42) benign(0.006) TCGA-IB-7651-01 15 72501087 72501087 A G PKM Silent p.V237V 0.09 TCGA-IB-7651-01 15 72546819 72546819 T G PARP6 Missense_Mutation p.M390L 0.13 tolerated(0.4) benign(0) TCGA-IB-7651-01 15 72551961 72551961 T C PARP6 Silent p.G266G 0.19 TCGA-IB-7651-01 15 72557756 72557756 C T PARP6 Missense_Mutation p.D79N 0.09 deleterious(0) possibly_damaging(0.838) TCGA-IB-7651-01 15 72582592 72582592 G A CELF6 Silent p.D133D 0.15 TCGA-IB-7651-01 15 72608191 72608191 G A CELF6 Missense_Mutation p.P114S 0.24 tolerated(0.08) benign(0.359) TCGA-IB-7651-01 15 72853880 72853880 G T ARIH1 Missense_Mutation p.S265I 0.15 deleterious(0) probably_damaging(0.979) TCGA-IB-7651-01 15 72875582 72875582 G T ARIH1 Missense_Mutation p.Q541H 0.16 deleterious(0.02) benign(0.411) TCGA-IB-7651-01 15 72953649 72953649 G T GOLGA6B Missense_Mutation p.Q203H 0.05 tolerated(0.07) benign(0.387) TCGA-IB-7651-01 15 72972455 72972455 A C HIGD2B 5'UTR 0.23 TCGA-IB-7651-01 15 72987519 72987519 G T BBS4 Missense_Mutation p.R9I 0.17 tolerated_low_confidence(0.2) benign(0.013) TCGA-IB-7651-01 15 73045191 73045191 G A ADPGK Silent p.L328L 0.22 TCGA-IB-7651-01 15 73409160 73409160 G T NEO1 Missense_Mutation p.G137V 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 15 73616569 73616569 C T HCN4 Silent p.R668R 0.21 TCGA-IB-7651-01 15 73621943 73621943 C T HCN4 Missense_Mutation p.D521N 0.20 deleterious(0.01) unknown(0) TCGA-IB-7651-01 15 73994861 73994861 G A CD276 Silent p.A115A 0.18 TCGA-IB-7651-01 15 73995295 73995295 T G CD276 Missense_Mutation p.L201V 0.13 deleterious(0.01) probably_damaging(0.973) TCGA-IB-7651-01 15 74003513 74003513 T C CD276 Splice_Site p.X528_splice 0.16 TCGA-IB-7651-01 15 74325728 74325728 C T PML Missense_Mutation p.H544Y 0.15 tolerated(0.06) possibly_damaging(0.598) TCGA-IB-7651-01 15 74425273 74425273 G A ISLR2 Missense_Mutation p.A60T 0.20 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 15 74467458 74467458 C T ISLR Missense_Mutation p.R87C 0.17 tolerated(0.18) probably_damaging(0.98) TCGA-IB-7651-01 15 74467777 74467777 C T ISLR Missense_Mutation p.T193I 0.19 tolerated(0.18) benign(0.035) TCGA-IB-7651-01 15 74472287 74472287 C T STRA6 3'Flank 0.19 TCGA-IB-7651-01 15 74653879 74653879 C A CYP11A1 Intron 0.17 TCGA-IB-7651-01 15 74708920 74708920 C T SEMA7A Missense_Mutation p.C266Y 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 15 74911554 74911554 G A CLK3 Missense_Mutation p.R154Q 0.05 deleterious_low_confidence(0.03) benign(0.097) TCGA-IB-7651-01 15 74911640 74911640 C T CLK3 Nonsense_Mutation p.R183* 0.16 TCGA-IB-7651-01 15 74948392 74948392 G A EDC3 Missense_Mutation p.H168Y 0.09 tolerated(1) benign(0.001) TCGA-IB-7651-01 15 75014721 75014721 G T CYP1A1 Missense_Mutation p.L240I 0.15 deleterious(0) possibly_damaging(0.901) TCGA-IB-7651-01 15 75042451 75042451 C A CYP1A2 Silent p.T124T 0.21 TCGA-IB-7651-01 15 75044494 75044494 C T CYP1A2 Missense_Mutation p.R358W 0.15 deleterious(0) benign(0.028) TCGA-IB-7651-01 15 75114202 75114202 C T LMAN1L Silent p.T364T 0.15 TCGA-IB-7651-01 15 75116790 75116790 T C LMAN1L Silent p.T474T 0.18 TCGA-IB-7651-01 15 75131059 75131059 C T ULK3 Missense_Mutation p.E343K 0.25 tolerated(0.13) benign(0.422) TCGA-IB-7651-01 15 75133792 75133792 C T ULK3 Silent p.Q141Q 0.15 TCGA-IB-7651-01 15 75190002 75190002 T C MPI Silent p.N401N 0.18 TCGA-IB-7651-01 15 75309056 75309056 G A SCAMP5 Missense_Mutation p.V87I 0.17 tolerated(0.12) probably_damaging(0.997) TCGA-IB-7651-01 15 75310804 75310804 G A SCAMP5 Silent p.S147S 0.16 TCGA-IB-7651-01 15 75311382 75311382 A G SCAMP5 3'UTR 0.22 TCGA-IB-7651-01 15 75499684 75499684 C A C15orf39 Missense_Mutation p.P432H 0.14 deleterious(0) probably_damaging(0.95) TCGA-IB-7651-01 15 75499830 75499830 C T C15orf39 Missense_Mutation p.R481W 0.08 deleterious(0.01) benign(0.068) TCGA-IB-7651-01 15 75500244 75500244 A G C15orf39 Missense_Mutation p.K619E 0.20 tolerated(0.41) benign(0) TCGA-IB-7651-01 15 75500779 75500779 C A C15orf39 Missense_Mutation p.A797D 0.18 tolerated(0.07) benign(0.12) TCGA-IB-7651-01 15 75653521 75653521 G A MAN2C1 Silent p.T442T 0.11 TCGA-IB-7651-01 15 75682033 75682033 G T SIN3A Missense_Mutation p.A994D 0.16 deleterious(0) possibly_damaging(0.802) TCGA-IB-7651-01 15 75684615 75684615 C A SIN3A Missense_Mutation p.S940I 0.21 deleterious(0.01) possibly_damaging(0.47) TCGA-IB-7651-01 15 75684652 75684652 G A SIN3A Missense_Mutation p.R928W 0.18 deleterious(0) possibly_damaging(0.564) TCGA-IB-7651-01 15 75942572 75942572 C T SNX33 Missense_Mutation p.R377C 0.20 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 15 75949349 75949349 C T SNX33 Silent p.G506G 0.18 TCGA-IB-7651-01 15 75969039 75969039 C T CSPG4 Missense_Mutation p.A1941T 0.18 tolerated(0.54) benign(0.001) TCGA-IB-7651-01 15 75975290 75975290 C T CSPG4 Silent p.E1514E 0.23 TCGA-IB-7651-01 15 75980453 75980453 G A CSPG4 Missense_Mutation p.P985S 0.05 deleterious(0.02) probably_damaging(0.916) TCGA-IB-7651-01 15 75980460 75980460 A G CSPG4 Silent p.D982D 0.19 TCGA-IB-7651-01 15 75980750 75980750 G A CSPG4 Missense_Mutation p.L886F 0.18 deleterious(0.01) possibly_damaging(0.714) TCGA-IB-7651-01 15 75981284 75981284 G A CSPG4 Nonsense_Mutation p.Q708* 0.20 TCGA-IB-7651-01 15 75981567 75981567 C T CSPG4 Silent p.A613A 0.17 TCGA-IB-7651-01 15 75981992 75981992 C T CSPG4 Missense_Mutation p.V472M 0.12 deleterious(0.01) probably_damaging(0.957) TCGA-IB-7651-01 15 76073005 76073005 A C RN7SL319P 5'Flank 0.14 TCGA-IB-7651-01 15 76075187 76075187 G T RN7SL319P 5'Flank 0.16 TCGA-IB-7651-01 15 76222500 76222500 A C FBXO22 Intron 0.23 TCGA-IB-7651-01 15 76484318 76484318 C T C15orf27 Missense_Mutation p.R260W 0.15 deleterious(0) possibly_damaging(0.855) TCGA-IB-7651-01 15 76630302 76630302 A G ISL2 Missense_Mutation p.Y81C 0.17 deleterious(0.03) benign(0.301) TCGA-IB-7651-01 15 76696915 76696915 G A SCAPER Silent p.A1139A 0.15 TCGA-IB-7651-01 15 77064232 77064232 T G SCAPER Missense_Mutation p.T367P 0.09 tolerated(0.21) benign(0.301) TCGA-IB-7651-01 15 77325208 77325208 G A PSTPIP1 Missense_Mutation p.V282M 0.36 deleterious(0) benign(0.075) TCGA-IB-7651-01 15 77407411 77407411 G A PEAK1 Missense_Mutation p.S1443F 0.17 deleterious(0) possibly_damaging(0.887) TCGA-IB-7651-01 15 77425553 77425553 G A PEAK1 Nonsense_Mutation p.R1291* 0.16 TCGA-IB-7651-01 15 77425586 77425586 G A PEAK1 Missense_Mutation p.L1280F 0.16 deleterious(0.02) possibly_damaging(0.793) TCGA-IB-7651-01 15 77473289 77473289 G T PEAK1 Missense_Mutation p.S327Y 0.14 deleterious(0.03) benign(0.429) TCGA-IB-7651-01 15 77907931 77907931 G A LINGO1 Silent p.I106I 0.11 TCGA-IB-7651-01 15 78208882 78208882 C T RP11-114H24.7 RNA 0.06 TCGA-IB-7651-01 15 78211580 78211580 G A RP11-114H24.7 Intron 0.18 TCGA-IB-7651-01 15 78305387 78305387 A C TBC1D2B Missense_Mutation p.F683C 0.15 deleterious(0.02) benign(0.126) TCGA-IB-7651-01 15 78316861 78316861 C T TBC1D2B Silent p.Q369Q 0.19 TCGA-IB-7651-01 15 78322507 78322507 G A TBC1D2B Missense_Mutation p.S230L 0.17 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 15 78398138 78398138 C T CIB2 Missense_Mutation p.G162D 0.21 tolerated(0.08) possibly_damaging(0.57) TCGA-IB-7651-01 15 78398176 78398176 G A CIB2 Silent p.C149C 0.08 TCGA-IB-7651-01 15 78403609 78403609 C T CIB2 Silent p.S32S 0.17 TCGA-IB-7651-01 15 78454048 78454048 G A IDH3A Missense_Mutation p.D139N 0.20 tolerated(1) benign(0.064) TCGA-IB-7651-01 15 78458537 78458537 C A IDH3A Missense_Mutation p.P304T 0.19 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 15 78474929 78474929 T C ACSBG1 Missense_Mutation p.E258G 0.16 tolerated(0.25) benign(0.012) TCGA-IB-7651-01 15 78557118 78557118 A G DNAJA4 Missense_Mutation p.T34A 0.14 deleterious(0) possibly_damaging(0.89) TCGA-IB-7651-01 15 78572804 78572804 G A DNAJA4 3'UTR 0.22 TCGA-IB-7651-01 15 78585111 78585111 G T WDR61 Missense_Mutation p.L56I 0.09 deleterious(0.04) benign(0.389) TCGA-IB-7651-01 15 78640310 78640310 C T CRABP1 Silent p.V135V 0.14 TCGA-IB-7651-01 15 78780532 78780532 T C IREB2 Missense_Mutation p.V602A 0.17 tolerated(0.06) possibly_damaging(0.602) TCGA-IB-7651-01 15 78805579 78805579 T C HYKK Missense_Mutation p.V50A 0.21 deleterious(0) possibly_damaging(0.895) TCGA-IB-7651-01 15 78837253 78837253 G A PSMA4 Silent p.L110L 0.19 TCGA-IB-7651-01 15 78893874 78893874 C A CHRNA3 Missense_Mutation p.R370S 0.20 tolerated(0.29) benign(0.122) TCGA-IB-7651-01 15 78893898 78893898 G A CHRNA3 Silent p.N362N 0.18 TCGA-IB-7651-01 15 78921375 78921375 C T CHRNB4 Silent p.V424V 0.19 TCGA-IB-7651-01 15 78921496 78921496 C A CHRNB4 Missense_Mutation p.G384V 0.18 tolerated(0.19) possibly_damaging(0.511) TCGA-IB-7651-01 15 79058949 79058949 G T ADAMTS7 Missense_Mutation p.P1102T 0.11 tolerated(0.12) benign(0.008) TCGA-IB-7651-01 15 79059345 79059345 T C ADAMTS7 Missense_Mutation p.T970A 0.17 tolerated(0.39) benign(0.013) TCGA-IB-7651-01 15 79059359 79059359 C T ADAMTS7 Missense_Mutation p.R965Q 0.22 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 15 79059868 79059868 G A ADAMTS7 Silent p.A904A 0.22 TCGA-IB-7651-01 15 79064008 79064008 C A ADAMTS7 Silent p.G765G 0.10 TCGA-IB-7651-01 15 79064172 79064172 C A ADAMTS7 Splice_Site p.X711_splice 0.16 TCGA-IB-7651-01 15 79082066 79082066 C T ADAMTS7 Silent p.P381P 0.19 TCGA-IB-7651-01 15 79189528 79189528 C A MORF4L1 3'UTR 0.21 TCGA-IB-7651-01 15 79224731 79224731 C T CTSH Missense_Mutation p.G159R 0.16 deleterious(0) probably_damaging(0.955) TCGA-IB-7651-01 15 79760664 79760664 G A KIAA1024 Missense_Mutation p.A897T 0.19 tolerated(0.19) benign(0.026) TCGA-IB-7651-01 15 80478528 80478528 C T FAH Silent p.L413L 0.18 TCGA-IB-7651-01 15 81241240 81241240 C A KIAA1199 Missense_Mutation p.P1354H 0.16 deleterious_low_confidence(0) unknown(0) TCGA-IB-7651-01 15 81294944 81294944 G A MESDC1 Missense_Mutation p.S111N 0.14 tolerated(0.36) benign(0.164) TCGA-IB-7651-01 15 81427610 81427610 G T C15orf26 Splice_Site p.X24_splice 0.13 TCGA-IB-7651-01 15 81430434 81430434 G A C15orf26 Silent p.Q145Q 0.09 TCGA-IB-7651-01 15 81571983 81571983 C T IL16 Silent p.L317L 0.18 TCGA-IB-7651-01 15 81592491 81592491 C T IL16 Silent p.L942L 0.20 TCGA-IB-7651-01 15 81614779 81614779 G A STARD5 Silent p.T84T 0.08 TCGA-IB-7651-01 15 81625165 81625165 G A TMC3 Silent p.L966L 0.18 TCGA-IB-7651-01 15 81650547 81650547 G A TMC3 Missense_Mutation p.A229V 0.16 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 15 81666401 81666401 T C TMC3 Silent p.A6A 0.17 TCGA-IB-7651-01 15 82335787 82335787 G A MEX3B Missense_Mutation p.A475V 0.13 tolerated(0.18) benign(0.108) TCGA-IB-7651-01 15 82444692 82444692 T G EFTUD1 Missense_Mutation p.K701N 0.16 deleterious(0.01) benign(0.05) TCGA-IB-7651-01 15 82532772 82532772 T G EFTUD1 Missense_Mutation p.N168T 0.12 deleterious(0.01) benign(0.102) TCGA-IB-7651-01 15 82555261 82555261 T G FAM154B Missense_Mutation p.I14S 0.14 deleterious(0) probably_damaging(0.913) TCGA-IB-7651-01 15 83335598 83335598 G T AP3B2 Missense_Mutation p.L585I 0.17 deleterious(0.04) benign(0.326) TCGA-IB-7651-01 15 83346884 83346884 G A AP3B2 Silent p.N406N 0.21 TCGA-IB-7651-01 15 83424801 83424801 G T FSD2 3'UTR 0.18 TCGA-IB-7651-01 15 83440974 83440974 G T FSD2 Missense_Mutation p.S373Y 0.24 deleterious(0.01) probably_damaging(0.988) TCGA-IB-7651-01 15 83478510 83478510 G A WHAMM Missense_Mutation p.G11D 0.18 tolerated(0.06) probably_damaging(0.982) TCGA-IB-7651-01 15 84237341 84237341 C T SH3GL3 Missense_Mutation p.T83I 0.15 tolerated(0.12) benign(0.213) TCGA-IB-7651-01 15 84257442 84257442 C T SH3GL3 Nonsense_Mutation p.R253* 0.15 TCGA-IB-7651-01 15 84539609 84539609 C T ADAMTSL3 Silent p.P286P 0.20 TCGA-IB-7651-01 15 85165419 85165419 C T ZSCAN2 3'UTR 0.24 TCGA-IB-7651-01 15 85186746 85186746 G T WDR73 Silent p.A364A 0.12 TCGA-IB-7651-01 15 85191804 85191804 C T WDR73 Missense_Mutation p.R84K 0.14 tolerated(0.35) benign(0.004) TCGA-IB-7651-01 15 85326844 85326844 G T ZNF592 Missense_Mutation p.G313V 0.17 tolerated(0.23) probably_damaging(0.998) TCGA-IB-7651-01 15 85341876 85341876 G T ZNF592 Missense_Mutation p.D932Y 0.18 deleterious(0.01) probably_damaging(0.982) TCGA-IB-7651-01 15 85345648 85345648 G A ZNF592 3'UTR 0.23 TCGA-IB-7651-01 15 85401163 85401163 G A ALPK3 Missense_Mutation p.G1267D 0.17 deleterious(0.03) possibly_damaging(0.634) TCGA-IB-7651-01 15 85407773 85407773 G A ALPK3 Missense_Mutation p.E1736K 0.18 deleterious(0) possibly_damaging(0.543) TCGA-IB-7651-01 15 85478712 85478712 C T SLC28A1 Missense_Mutation p.A515V 0.04 tolerated(0.44) benign(0.009) TCGA-IB-7651-01 15 85488368 85488368 G A SLC28A1 Silent p.E629E 0.09 TCGA-IB-7651-01 15 85488457 85488457 G A SLC28A1 3'UTR 0.21 TCGA-IB-7651-01 15 85488468 85488468 C A SLC28A1 3'UTR 0.22 TCGA-IB-7651-01 15 85488584 85488584 G A SLC28A1 3'UTR 0.24 TCGA-IB-7651-01 15 85610412 85610412 G A PDE8A Silent p.Q137Q 0.16 TCGA-IB-7651-01 15 85652283 85652283 G A PDE8A Splice_Site p.X346_splice 0.16 TCGA-IB-7651-01 15 85658679 85658679 C T PDE8A Nonsense_Mutation p.R454* 0.13 TCGA-IB-7651-01 15 86122939 86122939 A G AKAP13 Missense_Mutation p.K547R 0.18 tolerated_low_confidence(0.23) benign(0.004) TCGA-IB-7651-01 15 86125099 86125099 G A AKAP13 Missense_Mutation p.G1267E 0.19 deleterious_low_confidence(0.01) benign(0.026) TCGA-IB-7651-01 15 86800203 86800203 G A AGBL1 Silent p.P239P 0.17 TCGA-IB-7651-01 15 86822881 86822881 G A AGBL1 Missense_Mutation p.R650H 0.18 tolerated(0.58) benign(0.017) TCGA-IB-7651-01 15 86822914 86822914 G A AGBL1 Missense_Mutation p.G661E 0.21 deleterious(0.02) benign(0.041) TCGA-IB-7651-01 15 87217645 87217645 G A AGBL1 Missense_Mutation p.A1021T 0.16 tolerated(0.4) benign(0.003) TCGA-IB-7651-01 15 87572121 87572121 G A AGBL1 3'UTR 0.15 TCGA-IB-7651-01 15 87572170 87572170 C T AGBL1 3'UTR 0.10 TCGA-IB-7651-01 15 88420315 88420315 G A NTRK3 Missense_Mutation p.R791W 0.16 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 15 88522688 88522688 C A NTRK3 Intron 0.17 TCGA-IB-7651-01 15 88669595 88669595 C A NTRK3 Missense_Mutation p.A435S 0.09 deleterious(0.02) possibly_damaging(0.596) TCGA-IB-7651-01 15 88799241 88799241 C T NTRK3 Silent p.P48P 0.15 TCGA-IB-7651-01 15 89010892 89010892 G A MRPS11 5'UTR 0.20 TCGA-IB-7651-01 15 89018411 89018411 C T MRPS11 Missense_Mutation p.R118W 0.15 deleterious(0) probably_damaging(0.977) TCGA-IB-7651-01 15 89073957 89073957 C T DET1 Missense_Mutation p.R338Q 0.21 tolerated(0.59) benign(0.104) TCGA-IB-7651-01 15 89169883 89169883 G A AEN Missense_Mutation p.R148K 0.15 tolerated(0.27) benign(0.085) TCGA-IB-7651-01 15 89398733 89398733 C A ACAN Missense_Mutation p.L973I 0.19 tolerated(0.37) benign(0.145) TCGA-IB-7651-01 15 89400745 89400745 C A ACAN Silent p.P1643P 0.17 TCGA-IB-7651-01 15 89400789 89400789 C T ACAN Missense_Mutation p.T1658I 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 15 89400831 89400831 C A ACAN Missense_Mutation p.A1672D 0.16 tolerated(0.42) probably_damaging(0.99) TCGA-IB-7651-01 15 89402178 89402178 G T ACAN Missense_Mutation p.R2121I 0.15 tolerated(0.16) benign(0.379) TCGA-IB-7651-01 15 89403630 89403630 C T ACAN Silent p.C2302C 0.12 TCGA-IB-7651-01 15 89421380 89421380 C T HAPLN3 Missense_Mutation p.A302T 0.03 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 15 89421412 89421412 G A HAPLN3 Missense_Mutation p.A291V 0.17 deleterious(0) possibly_damaging(0.904) TCGA-IB-7651-01 15 89424833 89424833 C T HAPLN3 Missense_Mutation p.R83H 0.18 tolerated(0.14) benign(0.035) TCGA-IB-7651-01 15 89758374 89758374 G T RLBP1 Missense_Mutation p.L148I 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 15 89860100 89860100 C T FANCI 3'UTR 0.19 TCGA-IB-7651-01 15 89865049 89865049 G A POLG Missense_Mutation p.A839V 0.18 deleterious(0.02) probably_damaging(0.989) TCGA-IB-7651-01 15 89872050 89872050 C T POLG Missense_Mutation p.D346N 0.17 tolerated(0.06) probably_damaging(0.947) TCGA-IB-7651-01 15 89872175 89872175 G A POLG Missense_Mutation p.A341V 0.21 tolerated(0.23) benign(0.002) TCGA-IB-7651-01 15 89873447 89873447 C T POLG Silent p.S240S 0.07 TCGA-IB-7651-01 15 90167307 90167307 G A TICRR Missense_Mutation p.A1256T 0.19 tolerated(0.08) possibly_damaging(0.603) TCGA-IB-7651-01 15 90167585 90167585 C T TICRR Silent p.S1348S 0.20 TCGA-IB-7651-01 15 90171617 90171617 G A KIF7 3'UTR 0.14 TCGA-IB-7651-01 15 90246478 90246478 C A WDR93 Intron 0.24 TCGA-IB-7651-01 15 90340856 90340856 T A ANPEP Missense_Mutation p.S703C 0.18 deleterious(0.01) possibly_damaging(0.762) TCGA-IB-7651-01 15 90346982 90346982 C T ANPEP Missense_Mutation p.A445T 0.12 deleterious(0.05) benign(0.101) TCGA-IB-7651-01 15 90348375 90348375 C T ANPEP Silent p.T277T 0.18 TCGA-IB-7651-01 15 90631667 90631667 C T IDH2 Missense_Mutation p.G201D 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-IB-7651-01 15 90631926 90631926 G T IDH2 Missense_Mutation p.L143M 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-IB-7651-01 15 90631955 90631955 T C IDH2 Missense_Mutation p.K133R 0.14 tolerated_low_confidence(0.42) benign(0.016) TCGA-IB-7651-01 15 90766793 90766793 C T SEMA4B Silent p.G288G 0.14 TCGA-IB-7651-01 15 90771368 90771368 C T SEMA4B Silent p.S669S 0.17 TCGA-IB-7651-01 15 90771863 90771863 C A SEMA4B Missense_Mutation p.D834E 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 15 90774380 90774380 C A CIB1 Nonsense_Mutation p.E138* 0.12 TCGA-IB-7651-01 15 90774446 90774451 CTAGAG TT CIB1 Splice_Site p.X116_splice 0.15 TCGA-IB-7651-01 15 90785069 90785069 G A GDPGP1 Missense_Mutation p.R310Q 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 15 90796595 90796595 T G TTLL13 Missense_Mutation p.F138C 0.20 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 15 90800938 90800938 G A TTLL13 Missense_Mutation p.A307T 0.18 tolerated(0.59) benign(0.001) TCGA-IB-7651-01 15 90809089 90809089 G A NGRN Missense_Mutation p.E49K 0.21 tolerated(0.19) benign(0.057) TCGA-IB-7651-01 15 90814847 90814847 C T NGRN Nonsense_Mutation p.Q235* 0.06 TCGA-IB-7651-01 15 90904469 90904469 G A ZNF774 Missense_Mutation p.R469H 0.20 tolerated(0.57) probably_damaging(0.966) TCGA-IB-7651-01 15 90904619 90904619 C T ZNF774 3'UTR 0.15 TCGA-IB-7651-01 15 91017342 91017342 C T IQGAP1 Missense_Mutation p.A851V 0.18 deleterious(0.04) possibly_damaging(0.597) TCGA-IB-7651-01 15 91083357 91083357 G A CRTC3 Silent p.A73A 0.23 TCGA-IB-7651-01 15 91303942 91303942 G A BLM Missense_Mutation p.G447R 0.17 tolerated(0.18) benign(0.002) TCGA-IB-7651-01 15 91328228 91328228 G A BLM Missense_Mutation p.A914T 0.19 tolerated(0.1) possibly_damaging(0.621) TCGA-IB-7651-01 15 91346826 91346826 T G BLM Missense_Mutation p.L1145R 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 15 91347508 91347508 G T BLM Nonsense_Mutation p.E1224* 0.19 TCGA-IB-7651-01 15 91424215 91424215 C T FURIN Silent p.P579P 0.08 TCGA-IB-7651-01 15 91424593 91424593 G A FURIN Missense_Mutation p.D624N 0.21 tolerated(0.58) benign(0) TCGA-IB-7651-01 15 91435948 91435948 C T FES Silent p.G573G 0.19 TCGA-IB-7651-01 15 91461902 91461902 G A MAN2A2 Missense_Mutation p.A1073T 0.14 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 15 91512344 91512344 G A PRC1 Missense_Mutation p.P586S 0.13 tolerated(0.47) possibly_damaging(0.785) TCGA-IB-7651-01 15 91548319 91548319 C T VPS33B Missense_Mutation p.S379N 0.15 tolerated(0.5) benign(0.018) TCGA-IB-7651-01 15 91575710 91575710 G A AC068831.10 RNA 0.21 TCGA-IB-7651-01 15 91578446 91578446 G A AC068831.10 RNA 0.07 TCGA-IB-7651-01 15 91769481 91769481 G A SV2B 5'UTR 0.07 TCGA-IB-7651-01 15 92459545 92459545 G A SLCO3A1 Missense_Mutation p.R168H 0.23 tolerated(0.2) possibly_damaging(0.602) TCGA-IB-7651-01 15 92459678 92459678 G A SLCO3A1 Silent p.S212S 0.23 TCGA-IB-7651-01 15 92647576 92647576 C T SLCO3A1 Silent p.C271C 0.09 TCGA-IB-7651-01 15 93521533 93521533 G A CHD2 Missense_Mutation p.V883I 0.18 tolerated(0.94) benign(0.202) TCGA-IB-7651-01 15 93616263 93616263 G T RGMA Intron 0.11 TCGA-IB-7651-01 15 94841508 94841508 A C MCTP2 Missense_Mutation p.K5T 0.18 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-IB-7651-01 15 94841523 94841523 G A MCTP2 Missense_Mutation p.G10D 0.18 tolerated_low_confidence(0.09) benign(0.044) TCGA-IB-7651-01 15 95013650 95013650 C T MCTP2 Missense_Mutation p.R817W 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 15 96875553 96875553 G T NR2F2 Missense_Mutation p.Q73H 0.15 tolerated(0.14) benign(0.048) TCGA-IB-7651-01 15 97326812 97326812 A C SPATA8 5'UTR 0.13 TCGA-IB-7651-01 15 97326860 97326860 G A SPATA8 5'UTR 0.24 TCGA-IB-7651-01 15 98508838 98508838 A G ARRDC4 Missense_Mutation p.I106V 0.18 tolerated(0.71) benign(0.002) TCGA-IB-7651-01 15 98513913 98513913 C T ARRDC4 Silent p.C380C 0.17 TCGA-IB-7651-01 15 99456414 99456414 C T IGF1R Silent p.Y577Y 0.15 TCGA-IB-7651-01 15 99465579 99465579 G A IGF1R Missense_Mutation p.D802N 0.19 deleterious(0.04) probably_damaging(0.95) TCGA-IB-7651-01 15 99472828 99472828 G A IGF1R Missense_Mutation p.V942I 0.08 tolerated(1) benign(0.001) TCGA-IB-7651-01 15 99500663 99500663 A G IGF1R Missense_Mutation p.T1366A 0.18 tolerated_low_confidence(1) benign(0) TCGA-IB-7651-01 15 99511757 99511757 C T PGPEP1L Missense_Mutation p.A181T 0.13 tolerated(0.21) benign(0.084) TCGA-IB-7651-01 15 99666928 99666928 G A SYNM Missense_Mutation p.A312T 0.11 deleterious(0.01) probably_damaging(0.969) TCGA-IB-7651-01 15 99670348 99670348 G A SYNM Missense_Mutation p.G594S 0.15 tolerated(0.1) benign(0.097) TCGA-IB-7651-01 15 99672987 99672987 C T SYNM Silent p.S1473S 0.15 TCGA-IB-7651-01 15 99740177 99740177 C T TTC23 Missense_Mutation p.G236S 0.18 deleterious(0.02) possibly_damaging(0.871) TCGA-IB-7651-01 15 99926383 99926383 C A LRRC28 3'UTR 0.19 TCGA-IB-7651-01 16 1034862 1034862 G A SOX8 Missense_Mutation p.V273I 0.19 deleterious(0.02) probably_damaging(0.992) TCGA-IB-7651-01 16 1034993 1034993 G T SOX8 Missense_Mutation p.W316C 0.22 deleterious(0) possibly_damaging(0.838) TCGA-IB-7651-01 16 1035032 1035032 C T SOX8 Silent p.T329T 0.19 TCGA-IB-7651-01 16 10532037 10532037 G A ATF7IP2 Missense_Mutation p.R347H 0.19 deleterious(0.02) probably_damaging(0.945) TCGA-IB-7651-01 16 107212 107212 A G SNRNP25 3'UTR 0.23 TCGA-IB-7651-01 16 10775953 10775953 C T TEKT5 Missense_Mutation p.E254K 0.20 tolerated(0.11) benign(0.041) TCGA-IB-7651-01 16 10862849 10862849 C A TVP23A 3'UTR 0.19 TCGA-IB-7651-01 16 108725 108725 C T RHBDF1 Missense_Mutation p.A728T 0.10 deleterious(0) probably_damaging(0.943) TCGA-IB-7651-01 16 10996534 10996534 G A CIITA Silent p.S216S 0.20 TCGA-IB-7651-01 16 11066877 11066877 C T CLEC16A Silent p.S229S 0.23 TCGA-IB-7651-01 16 11114148 11114148 G A CLEC16A Missense_Mutation p.A468T 0.21 tolerated(0.15) probably_damaging(0.987) TCGA-IB-7651-01 16 11272254 11272254 G A CLEC16A Missense_Mutation p.E957K 0.19 tolerated_low_confidence(0.43) benign(0.212) TCGA-IB-7651-01 16 1129206 1129206 G A SSTR5 Missense_Mutation p.R113H 0.09 deleterious(0.02) probably_damaging(1) TCGA-IB-7651-01 16 1129417 1129417 C T SSTR5 Silent p.G183G 0.21 TCGA-IB-7651-01 16 1129709 1129709 G A SSTR5 Missense_Mutation p.A281T 0.20 tolerated(0.49) benign(0.028) TCGA-IB-7651-01 16 112988 112988 C T RHBDF1 Missense_Mutation p.A219T 0.20 deleterious(0.02) benign(0.26) TCGA-IB-7651-01 16 1129926 1129926 C T SSTR5 Missense_Mutation p.A353V 0.08 tolerated(0.56) benign(0.036) TCGA-IB-7651-01 16 1129969 1129969 C T SSTR5 3'UTR 0.27 TCGA-IB-7651-01 16 113124 113124 T C RHBDF1 Silent p.E173E 0.15 TCGA-IB-7651-01 16 11362939 11362939 C A TNP2 Nonsense_Mutation p.G61* 0.17 TCGA-IB-7651-01 16 11650327 11650327 G A LITAF Intron 0.33 TCGA-IB-7651-01 16 11785247 11785247 G A TXNDC11 Missense_Mutation p.P600L 0.18 tolerated(0.1) possibly_damaging(0.551) TCGA-IB-7651-01 16 11792005 11792005 G A TXNDC11 Silent p.A361A 0.22 TCGA-IB-7651-01 16 11873039 11873039 C T ZC3H7A Missense_Mutation p.A97T 0.09 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 11941533 11941533 C T RSL1D1 Missense_Mutation p.V126I 0.16 tolerated(1) benign(0.02) TCGA-IB-7651-01 16 11967016 11967016 G A GSPT1 Missense_Mutation p.A625V 0.15 deleterious(0) possibly_damaging(0.841) TCGA-IB-7651-01 16 11990584 11990584 T G GSPT1 Silent p.I165I 0.25 TCGA-IB-7651-01 16 12059063 12059063 G A TNFRSF17 5'UTR 0.05 TCGA-IB-7651-01 16 12450028 12450028 G T SNX29 Missense_Mutation p.E597D 0.21 tolerated(0.08) possibly_damaging(0.9) TCGA-IB-7651-01 16 1254314 1254314 G A CACNA1H Silent p.P769P 0.18 TCGA-IB-7651-01 16 1291436 1291436 G A TPSAB1 Missense_Mutation p.D79N 0.15 tolerated(0.24) benign(0.002) TCGA-IB-7651-01 16 1306840 1306840 G A TPSD1 Silent p.E99E 0.21 TCGA-IB-7651-01 16 136767 136767 G A NPRL3 Silent p.S548S 0.21 TCGA-IB-7651-01 16 1394480 1394480 G A BAIAP3 Missense_Mutation p.R573H 0.23 tolerated(0.2) possibly_damaging(0.684) TCGA-IB-7651-01 16 1397955 1397955 G A BAIAP3 Missense_Mutation p.R1064H 0.17 tolerated(0.14) benign(0.015) TCGA-IB-7651-01 16 14022092 14022092 G T ERCC4 Missense_Mutation p.K264N 0.16 deleterious(0.04) possibly_damaging(0.566) TCGA-IB-7651-01 16 14026249 14026249 C A ERCC4 Intron 0.21 TCGA-IB-7651-01 16 14029521 14029521 G A ERCC4 Missense_Mutation p.V578M 0.21 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 16 14041754 14041754 C T ERCC4 Silent p.F767F 0.19 TCGA-IB-7651-01 16 14042302 14042302 C A ERCC4 3'UTR 0.22 TCGA-IB-7651-01 16 14234480 14234480 C T MKL2 Missense_Mutation p.A6V 0.06 tolerated(0.27) benign(0.004) TCGA-IB-7651-01 16 14294209 14294209 C A MKL2 Intron 0.16 TCGA-IB-7651-01 16 14334513 14334513 C T MKL2 Intron 0.17 TCGA-IB-7651-01 16 14340860 14340860 C T MKL2 Silent p.I581I 0.15 TCGA-IB-7651-01 16 14341058 14341058 C A MKL2 Nonsense_Mutation p.C647* 0.15 TCGA-IB-7651-01 16 14355422 14355422 G T MKL2 3'UTR 0.18 TCGA-IB-7651-01 16 14403174 14403174 G A MIR365A RNA 0.13 TCGA-IB-7651-01 16 14738367 14738367 G A BFAR Missense_Mutation p.R55H 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 16 14966106 14966106 C T NOMO1 Silent p.I658I 0.16 TCGA-IB-7651-01 16 14970277 14970277 G T NOMO1 Missense_Mutation p.Q806H 0.18 deleterious(0.05) possibly_damaging(0.553) TCGA-IB-7651-01 16 14989432 14989432 C T NOMO1 Missense_Mutation p.A1200V 0.08 tolerated(0.17) benign(0.004) TCGA-IB-7651-01 16 1502883 1502883 C T CLCN7 Missense_Mutation p.R409Q 0.23 tolerated(0.18) benign(0.041) TCGA-IB-7651-01 16 150396 150396 G A NPRL3 Silent p.A247A 0.25 TCGA-IB-7651-01 16 1507738 1507738 G A CLCN7 Missense_Mutation p.S232F 0.18 tolerated(0.22) benign(0.001) TCGA-IB-7651-01 16 1509188 1509188 G A CLCN7 Missense_Mutation p.P199S 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 16 15098085 15098085 G A PDXDC1 Missense_Mutation p.G95E 0.03 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 16 15116568 15116568 G A PDXDC1 Missense_Mutation p.R366Q 0.08 tolerated(0.6) benign(0.003) TCGA-IB-7651-01 16 15198404 15198404 G A RP11-1186N24.5 3'Flank 0.24 TCGA-IB-7651-01 16 1537406 1537406 G A PTX4 Missense_Mutation p.P231L 0.18 tolerated(0.16) benign(0.015) TCGA-IB-7651-01 16 1551487 1551487 G A TELO2 Missense_Mutation p.A450T 0.24 tolerated(0.56) benign(0.001) TCGA-IB-7651-01 16 1557010 1557010 G A TELO2 Silent p.A728A 0.18 TCGA-IB-7651-01 16 15718648 15718648 C T KIAA0430 Missense_Mutation p.A750T 0.08 tolerated(0.45) benign(0.001) TCGA-IB-7651-01 16 15729733 15729733 C A KIAA0430 Missense_Mutation p.G204V 0.23 tolerated_low_confidence(0.08) possibly_damaging(0.764) TCGA-IB-7651-01 16 1573949 1573949 G A IFT140 Silent p.G1050G 0.22 TCGA-IB-7651-01 16 15781279 15781279 C T NDE1 Missense_Mutation p.A145V 0.20 tolerated(0.27) probably_damaging(0.97) TCGA-IB-7651-01 16 15814797 15814797 G A MYH11 Missense_Mutation p.R1571W 0.18 probably_damaging(0.993) TCGA-IB-7651-01 16 15818439 15818439 C T NDE1 3'UTR 0.21 TCGA-IB-7651-01 16 15826526 15826526 G T MYH11 Silent p.A1189A 0.20 TCGA-IB-7651-01 16 15829434 15829434 G T MYH11 Missense_Mutation p.L1106I 0.20 possibly_damaging(0.544) TCGA-IB-7651-01 16 15841795 15841795 T G MYH11 Missense_Mutation p.E736A 0.16 probably_damaging(0.998) TCGA-IB-7651-01 16 15844149 15844149 G A MYH11 Missense_Mutation p.T642M 0.16 possibly_damaging(0.84) TCGA-IB-7651-01 16 15853516 15853516 C T MYH11 Missense_Mutation p.V447M 0.19 probably_damaging(1) TCGA-IB-7651-01 16 15982427 15982427 C T FOPNL Missense_Mutation p.E6K 0.16 deleterious(0) probably_damaging(0.926) TCGA-IB-7651-01 16 16251606 16251606 C T ABCC6 Missense_Mutation p.E1266K 0.23 tolerated(0.05) benign(0.017) TCGA-IB-7651-01 16 1636214 1636214 G T IFT140 Missense_Mutation p.L358M 0.17 tolerated(0.22) benign(0.243) TCGA-IB-7651-01 16 169169 169169 G A NPRL3 Nonsense_Mutation p.R92* 0.23 TCGA-IB-7651-01 16 17211831 17211831 G A XYLT1 Silent p.G743G 0.10 TCGA-IB-7651-01 16 17352928 17352928 C T XYLT1 Missense_Mutation p.R277H 0.16 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 16 17353281 17353281 G A XYLT1 Silent p.D159D 0.20 TCGA-IB-7651-01 16 1756509 1756509 C T MAPK8IP3 Missense_Mutation p.P57S 0.22 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 1816924 1816924 C A MAPK8IP3 Missense_Mutation p.L1013M 0.16 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 16 1817158 1817158 T C MAPK8IP3 Missense_Mutation p.W1032R 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 1822318 1822318 C A MRPS34 Missense_Mutation p.E187D 0.18 tolerated(0.05) benign(0.116) TCGA-IB-7651-01 16 1825702 1825702 C A EME2 Intron 0.14 TCGA-IB-7651-01 16 1827164 1827164 C T SPSB3 Silent p.A334A 0.07 TCGA-IB-7651-01 16 1827764 1827764 C A SPSB3 Missense_Mutation p.K235N 0.18 deleterious(0.02) probably_damaging(0.996) TCGA-IB-7651-01 16 1827983 1827983 C T SPSB3 Missense_Mutation p.G187S 0.15 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 16 1841445 1841445 C T IGFALS Missense_Mutation p.R363H 0.18 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 16 18531932 18531932 G A NOMO2 Silent p.A781A 0.21 TCGA-IB-7651-01 16 18532153 18532153 G T NOMO2 Missense_Mutation p.P736H 0.11 deleterious(0.03) probably_damaging(0.962) TCGA-IB-7651-01 16 18604006 18604006 C T ABCC6P1 RNA 0.13 TCGA-IB-7651-01 16 1866938 1866938 C T HAGH Missense_Mutation p.E235K 0.15 deleterious(0) probably_damaging(0.98) TCGA-IB-7651-01 16 1877337 1877337 G T FAHD1 Missense_Mutation p.S36I 0.18 deleterious(0.02) benign(0.14) TCGA-IB-7651-01 16 18840938 18840938 C T SMG1 Silent p.R3091R 0.16 TCGA-IB-7651-01 16 18849783 18849783 T G SMG1 Missense_Mutation p.S2364R 0.21 deleterious(0.03) probably_damaging(0.995) TCGA-IB-7651-01 16 18856783 18856783 T C SMG1 Missense_Mutation p.K2063E 0.19 tolerated(0.11) benign(0.078) TCGA-IB-7651-01 16 1903110 1903110 T C MEIOB Missense_Mutation p.I236M 0.20 tolerated(0.09) benign(0.267) TCGA-IB-7651-01 16 19058438 19058438 A G TMC7 Missense_Mutation p.Q536R 0.20 deleterious(0.02) possibly_damaging(0.864) TCGA-IB-7651-01 16 19089510 19089510 G T COQ7 3'UTR 0.27 TCGA-IB-7651-01 16 19195263 19195263 C T SYT17 Missense_Mutation p.R249C 0.16 deleterious(0.02) benign(0.073) TCGA-IB-7651-01 16 19468007 19468007 G T TMC5 Intron 0.18 TCGA-IB-7651-01 16 19509393 19509393 C A TMC5 3'UTR 0.18 TCGA-IB-7651-01 16 19514705 19514705 G A GDE1 3'UTR 0.18 TCGA-IB-7651-01 16 19547923 19547923 G A CCP110 Missense_Mutation p.S311N 0.05 tolerated(0.5) benign(0.192) TCGA-IB-7651-01 16 19551989 19551989 G T CCP110 Missense_Mutation p.E643D 0.15 tolerated(0.37) probably_damaging(0.971) TCGA-IB-7651-01 16 19702706 19702706 C T C16orf62 Silent p.D942D 0.24 TCGA-IB-7651-01 16 19710833 19710833 C T C16orf62 Missense_Mutation p.R975C 0.15 deleterious(0) possibly_damaging(0.862) TCGA-IB-7651-01 16 19838353 19838353 C T IQCK Silent p.R232R 0.17 TCGA-IB-7651-01 16 19883239 19883239 G A GPRC5B Missense_Mutation p.T310M 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-IB-7651-01 16 19883350 19883350 G A GPRC5B Missense_Mutation p.A273V 0.21 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 16 19883423 19883423 C T GPRC5B Missense_Mutation p.A249T 0.10 tolerated(0.05) benign(0.014) TCGA-IB-7651-01 16 19883930 19883930 G A GPRC5B Missense_Mutation p.R80W 0.18 deleterious(0.02) probably_damaging(1) TCGA-IB-7651-01 16 1995840 1995840 C A RPL3L Missense_Mutation p.R348I 0.20 deleterious(0) probably_damaging(0.956) TCGA-IB-7651-01 16 1997042 1997042 C T RPL3L Missense_Mutation p.R249H 0.05 deleterious(0.04) benign(0.103) TCGA-IB-7651-01 16 20043043 20043043 C T GPR139 3'UTR 0.19 TCGA-IB-7651-01 16 20043299 20043299 C A GPR139 Missense_Mutation p.A274S 0.23 deleterious(0.03) probably_damaging(0.996) TCGA-IB-7651-01 16 20043354 20043354 C T GPR139 Silent p.A255A 0.19 TCGA-IB-7651-01 16 2012373 2012373 C T RPS2 Intron 0.21 TCGA-IB-7651-01 16 20322533 20322533 T G GP2 3'UTR 0.26 TCGA-IB-7651-01 16 20331047 20331047 A G GP2 Missense_Mutation p.V304A 0.17 tolerated(1) benign(0.006) TCGA-IB-7651-01 16 20355365 20355365 C T UMOD Missense_Mutation p.A438T 0.22 tolerated(0.05) benign(0.017) TCGA-IB-7651-01 16 2035947 2035947 G A GFER Missense_Mutation p.R179H 0.10 tolerated(0.1) benign(0.003) TCGA-IB-7651-01 16 2035969 2035969 C T GFER Silent p.F186F 0.18 TCGA-IB-7651-01 16 20370579 20370579 C T PDILT 3'UTR 0.19 TCGA-IB-7651-01 16 20384360 20384360 C A PDILT Missense_Mutation p.D256Y 0.19 deleterious(0) possibly_damaging(0.854) TCGA-IB-7651-01 16 20422901 20422901 C A ACSM5 Missense_Mutation p.P32H 0.19 tolerated(0.07) possibly_damaging(0.469) TCGA-IB-7651-01 16 2042719 2042719 G A SYNGR3 Silent p.T140T 0.18 TCGA-IB-7651-01 16 2042976 2042976 T C SYNGR3 Missense_Mutation p.V198A 0.16 tolerated(0.51) benign(0.001) TCGA-IB-7651-01 16 20430652 20430652 C T ACSM5 Missense_Mutation p.A173V 0.22 tolerated(0.06) benign(0.311) TCGA-IB-7651-01 16 20442373 20442373 C T ACSM5 Missense_Mutation p.A395V 0.16 deleterious(0.04) benign(0.114) TCGA-IB-7651-01 16 20448438 20448438 G A ACSM5 Missense_Mutation p.R458H 0.09 tolerated(0.47) benign(0.005) TCGA-IB-7651-01 16 20451781 20451781 G A ACSM5 3'UTR 0.19 TCGA-IB-7651-01 16 20476939 20476939 C T ACSM2A Missense_Mutation p.A93V 0.07 tolerated(0.64) benign(0.09) TCGA-IB-7651-01 16 2048484 2048484 C T ZNF598 Missense_Mutation p.A822T 0.22 benign(0.068) TCGA-IB-7651-01 16 2048485 2048485 C T ZNF598 Silent p.T821T 0.22 TCGA-IB-7651-01 16 2049591 2049591 G A ZNF598 Silent p.L653L 0.18 TCGA-IB-7651-01 16 20559396 20559396 G T ACSM2B Silent p.G362G 0.15 TCGA-IB-7651-01 16 20570669 20570669 G A ACSM2B Missense_Mutation p.A93V 0.22 tolerated(0.66) benign(0.034) TCGA-IB-7651-01 16 20681260 20681260 C T ACSM1 Silent p.S267S 0.18 TCGA-IB-7651-01 16 20748126 20748126 A G THUMPD1 Intron 0.08 TCGA-IB-7651-01 16 20787326 20787326 A G ACSM3 Missense_Mutation p.R129G 0.20 deleterious(0) possibly_damaging(0.557) TCGA-IB-7651-01 16 20807831 20807831 C T ERI2 3'UTR 0.18 TCGA-IB-7651-01 16 20807899 20807899 A G ERI2 3'UTR 0.24 TCGA-IB-7651-01 16 20851745 20851745 C A AC004381.6 Missense_Mutation p.S527R 0.22 tolerated(0.34) benign(0.057) TCGA-IB-7651-01 16 20871273 20871273 C T DCUN1D3 Missense_Mutation p.E284K 0.11 tolerated_low_confidence(0.49) benign(0.021) TCGA-IB-7651-01 16 2087936 2087936 C T SLC9A3R2 Missense_Mutation p.A322V 0.15 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 16 2094713 2094713 G A NTHL1 Missense_Mutation p.A156V 0.20 tolerated(0.19) benign(0.094) TCGA-IB-7651-01 16 20959914 20959914 C T DNAH3 Missense_Mutation p.R3745H 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 20966215 20966215 G A DNAH3 Missense_Mutation p.A3664V 0.22 tolerated(0.12) benign(0.005) TCGA-IB-7651-01 16 20974849 20974849 C A DNAH3 Missense_Mutation p.A3453S 0.23 tolerated(0.79) benign(0.012) TCGA-IB-7651-01 16 20975154 20975154 T C DNAH3 Missense_Mutation p.D3351G 0.19 tolerated(0.06) benign(0.005) TCGA-IB-7651-01 16 20975642 20975642 C A DNAH3 Missense_Mutation p.K3188N 0.23 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 16 20976326 20976326 G T DNAH3 Nonsense_Mutation p.C2960* 0.19 TCGA-IB-7651-01 16 21049222 21049222 C T DNAH3 Missense_Mutation p.R1604H 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 21098312 21098312 T G DNAH3 Missense_Mutation p.K912T 0.19 deleterious(0.01) probably_damaging(0.978) TCGA-IB-7651-01 16 2112582 2112582 C T TSC2 Silent p.L448L 0.15 TCGA-IB-7651-01 16 21181905 21181905 C A TMEM159 Missense_Mutation p.L82M 0.22 tolerated(0.07) benign(0.028) TCGA-IB-7651-01 16 2120560 2120560 C T TSC2 Missense_Mutation p.A607V 0.19 tolerated(0.14) probably_damaging(0.989) TCGA-IB-7651-01 16 2124212 2124212 C A TSC2 Silent p.V789V 0.17 TCGA-IB-7651-01 16 21261844 21261844 G T ANKS4B Missense_Mutation p.E319D 0.16 tolerated(0.62) benign(0.029) TCGA-IB-7651-01 16 2129279 2129279 C T TSC2 Missense_Mutation p.S1045F 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 16 2130329 2130329 G A TSC2 Silent p.V1187V 0.18 TCGA-IB-7651-01 16 21328268 21328268 C T CRYM-AS1 RNA 0.07 TCGA-IB-7651-01 16 2134252 2134252 G T TSC2 Missense_Mutation p.E1343D 0.28 tolerated_low_confidence(0.38) benign(0.032) TCGA-IB-7651-01 16 2136299 2136299 G A TSC2 Missense_Mutation p.D1590N 0.22 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 2143020 2143020 G A PKD1 Silent p.H3697H 0.04 TCGA-IB-7651-01 16 2147772 2147772 C T PKD1 Missense_Mutation p.V3393I 0.17 benign(0.017) TCGA-IB-7651-01 16 2147955 2147955 C T PKD1 Missense_Mutation p.G3361R 0.23 benign(0.02) TCGA-IB-7651-01 16 2153410 2153410 G T PKD1 Missense_Mutation p.A2883D 0.20 benign(0.005) TCGA-IB-7651-01 16 2153863 2153863 C T PKD1 Missense_Mutation p.R2732Q 0.18 benign(0) TCGA-IB-7651-01 16 2160529 2160529 G A PKD1 Missense_Mutation p.R1547C 0.21 benign(0.033) TCGA-IB-7651-01 16 2161761 2161761 C T PKD1 Missense_Mutation p.G1136D 0.21 benign(0.002) TCGA-IB-7651-01 16 2161784 2161784 G A PKD1 Silent p.S1128S 0.23 TCGA-IB-7651-01 16 2164407 2164407 C G PKD1 Missense_Mutation p.V873L 0.21 benign(0.001) TCGA-IB-7651-01 16 2164529 2164529 C T PKD1 Missense_Mutation p.R832H 0.23 benign(0) TCGA-IB-7651-01 16 2168027 2168027 C T PKD1 Silent p.S322S 0.27 TCGA-IB-7651-01 16 2168110 2168110 C T PKD1 Missense_Mutation p.A295T 0.20 benign(0.007) TCGA-IB-7651-01 16 21716385 21716385 C T OTOA Intron 0.22 TCGA-IB-7651-01 16 21739636 21739636 C T OTOA Silent p.I697I 0.06 TCGA-IB-7651-01 16 21814035 21814035 C A RRN3P1 RNA 0.26 TCGA-IB-7651-01 16 2203518 2203518 C T RAB26 3'UTR 0.22 TCGA-IB-7651-01 16 22142594 22142594 C T VWA3A Missense_Mutation p.A574V 0.21 deleterious(0.03) probably_damaging(0.987) TCGA-IB-7651-01 16 22163834 22163834 C T VWA3A Missense_Mutation p.A1095V 0.17 tolerated(0.2) benign(0.026) TCGA-IB-7651-01 16 2223366 2223366 C T TRAF7 Silent p.I326I 0.13 TCGA-IB-7651-01 16 2223811 2223811 C T TRAF7 Missense_Mutation p.A370V 0.18 tolerated(0.06) benign(0.095) TCGA-IB-7651-01 16 22320292 22320292 G A POLR3E Missense_Mutation p.R71H 0.18 tolerated(0.11) possibly_damaging(0.608) TCGA-IB-7651-01 16 22324989 22324989 G A POLR3E Missense_Mutation p.S138N 0.20 deleterious(0.02) benign(0.038) TCGA-IB-7651-01 16 22328345 22328345 G T POLR3E Missense_Mutation p.S253I 0.20 tolerated(0.2) benign(0.148) TCGA-IB-7651-01 16 2236773 2236773 C T CASKIN1 Missense_Mutation p.R328Q 0.21 possibly_damaging(0.85) TCGA-IB-7651-01 16 2236819 2236819 C T CASKIN1 Missense_Mutation p.E313K 0.16 probably_damaging(0.992) TCGA-IB-7651-01 16 2239246 2239246 C T CASKIN1 Missense_Mutation p.R160H 0.16 probably_damaging(1) TCGA-IB-7651-01 16 22545850 22545850 G A NPIPB5 Missense_Mutation p.E516K 0.05 tolerated_low_confidence(0.19) possibly_damaging(0.899) TCGA-IB-7651-01 16 2256400 2256400 T C MLST8 Silent p.I57I 0.17 TCGA-IB-7651-01 16 2259423 2259423 G A BRICD5 Silent p.I209I 0.11 TCGA-IB-7651-01 16 2264199 2264199 G A PGP Silent p.L194L 0.20 TCGA-IB-7651-01 16 2264203 2264203 G A PGP Silent p.G192G 0.13 TCGA-IB-7651-01 16 2273605 2273605 G A E4F1 5'UTR 0.15 TCGA-IB-7651-01 16 2279622 2279622 G A E4F1 Missense_Mutation p.V121M 0.22 deleterious(0.02) benign(0.317) TCGA-IB-7651-01 16 22826268 22826268 C T HS3ST2 Missense_Mutation p.R113W 0.14 deleterious(0) probably_damaging(0.918) TCGA-IB-7651-01 16 22926338 22926338 G A HS3ST2 Missense_Mutation p.A187T 0.22 tolerated(0.16) probably_damaging(0.91) TCGA-IB-7651-01 16 22926574 22926574 G A HS3ST2 Silent p.P265P 0.21 TCGA-IB-7651-01 16 22926592 22926592 C T HS3ST2 Silent p.F271F 0.22 TCGA-IB-7651-01 16 23080093 23080093 C T USP31 Silent p.S1111S 0.17 TCGA-IB-7651-01 16 23093780 23093780 T C USP31 Missense_Mutation p.I643M 0.20 deleterious(0) possibly_damaging(0.756) TCGA-IB-7651-01 16 231010 231010 C T HBQ1 Missense_Mutation p.A111V 0.17 deleterious(0.01) benign(0.284) TCGA-IB-7651-01 16 23226069 23226069 C T SCNN1G Silent p.D510D 0.19 TCGA-IB-7651-01 16 2328417 2328417 G A ABCA3 Silent p.I1530I 0.19 TCGA-IB-7651-01 16 2334403 2334403 G A ABCA3 Missense_Mutation p.H1247Y 0.18 tolerated(0.23) benign(0.01) TCGA-IB-7651-01 16 23364329 23364329 C A SCNN1B Silent p.G173G 0.18 TCGA-IB-7651-01 16 23382619 23382619 G A SCNN1B Splice_Site p.X294_splice 0.19 TCGA-IB-7651-01 16 23403772 23403772 G A COG7 Missense_Mutation p.T692I 0.21 tolerated(0.16) benign(0.389) TCGA-IB-7651-01 16 23430028 23430028 A G COG7 Missense_Mutation p.V377A 0.19 deleterious(0) benign(0.049) TCGA-IB-7651-01 16 2347331 2347331 G A ABCA3 Silent p.Y754Y 0.22 TCGA-IB-7651-01 16 2347394 2347394 G A ABCA3 Silent p.I733I 0.18 TCGA-IB-7651-01 16 23536371 23536371 T G EARS2 Intron 0.31 TCGA-IB-7651-01 16 23555946 23555946 G A EARS2 Missense_Mutation p.A125V 0.08 tolerated(0.22) benign(0.152) TCGA-IB-7651-01 16 2358456 2358456 G A ABCA3 Missense_Mutation p.A427V 0.14 tolerated(0.09) benign(0.066) TCGA-IB-7651-01 16 23641691 23641691 T G PALB2 Missense_Mutation p.D595A 0.07 deleterious(0.03) benign(0.108) TCGA-IB-7651-01 16 23646945 23646945 C T PALB2 Missense_Mutation p.A308T 0.17 tolerated(0.44) benign(0.023) TCGA-IB-7651-01 16 23649187 23649187 C T PALB2 Silent p.P65P 0.21 TCGA-IB-7651-01 16 23693421 23693421 T G PLK1 Silent p.T253T 0.05 TCGA-IB-7651-01 16 23702279 23702279 C T ERN2 Missense_Mutation p.R933H 0.09 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 16 23706195 23706195 C A ERN2 Missense_Mutation p.G700C 0.18 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 16 23713497 23713497 G T ERN2 Silent p.T441T 0.17 TCGA-IB-7651-01 16 2373489 2373489 G A ABCA3 Intron 0.20 TCGA-IB-7651-01 16 23767434 23767434 G A CHP2 Missense_Mutation p.R91H 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 23847551 23847551 C T PRKCB Missense_Mutation p.R19C 0.27 deleterious(0.01) possibly_damaging(0.479) TCGA-IB-7651-01 16 24192159 24192159 G T PRKCB Missense_Mutation p.K481N 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 24560342 24560342 C A RBBP6 Intron 0.28 TCGA-IB-7651-01 16 24581479 24581479 A G RBBP6 Silent p.V1156V 0.06 TCGA-IB-7651-01 16 24581622 24581622 C T RBBP6 Missense_Mutation p.A1204V 0.18 tolerated_low_confidence(0.07) unknown(0) TCGA-IB-7651-01 16 24835213 24835213 C T TNRC6A 3'UTR 0.06 TCGA-IB-7651-01 16 24922842 24922842 C T SLC5A11 Silent p.G672G 0.18 TCGA-IB-7651-01 16 24931466 24931466 C A ARHGAP17 Missense_Mutation p.E877D 0.19 deleterious_low_confidence(0) benign(0) TCGA-IB-7651-01 16 24942726 24942726 C A ARHGAP17 Splice_Site p.X632_splice 0.24 TCGA-IB-7651-01 16 24946886 24946886 C T ARHGAP17 Missense_Mutation p.G600D 0.10 deleterious_low_confidence(0) benign(0.196) TCGA-IB-7651-01 16 24958811 24958811 T C ARHGAP17 Silent p.R411R 0.06 TCGA-IB-7651-01 16 2499376 2499376 T C CCNF Missense_Mutation p.S438P 0.23 deleterious(0.01) possibly_damaging(0.877) TCGA-IB-7651-01 16 2510961 2510961 C A C16orf59 Missense_Mutation p.S114Y 0.21 deleterious(0.01) possibly_damaging(0.667) TCGA-IB-7651-01 16 2510970 2510970 C T C16orf59 Missense_Mutation p.T117M 0.21 deleterious(0.04) possibly_damaging(0.855) TCGA-IB-7651-01 16 2511088 2511088 G A C16orf59 Silent p.R156R 0.09 TCGA-IB-7651-01 16 25143812 25143812 G A LCMT1 Missense_Mutation p.A99T 0.18 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 16 25189343 25189343 A G LCMT1 Silent p.%3D 0.20 TCGA-IB-7651-01 16 25189427 25189427 G A LCMT1 3'UTR 0.19 TCGA-IB-7651-01 16 2522417 2522417 G A NTN3 Missense_Mutation p.V239I 0.19 tolerated(0.19) benign(0.001) TCGA-IB-7651-01 16 2522741 2522741 A C NTN3 Missense_Mutation p.N323T 0.08 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 16 25228637 25228637 G A AQP8 Missense_Mutation p.G44D 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 2523431 2523431 C A NTN3 Missense_Mutation p.D440E 0.17 tolerated(0.38) benign(0.069) TCGA-IB-7651-01 16 25251325 25251325 G A ZKSCAN2 Missense_Mutation p.R906W 0.22 deleterious(0.03) probably_damaging(0.93) TCGA-IB-7651-01 16 25255541 25255541 G A ZKSCAN2 Missense_Mutation p.R516W 0.20 deleterious(0.02) probably_damaging(0.956) TCGA-IB-7651-01 16 25258585 25258585 A C ZKSCAN2 Missense_Mutation p.V311G 0.17 tolerated(0.2) benign(0.002) TCGA-IB-7651-01 16 2546886 2546886 C T RP11-20I23.1 Missense_Mutation p.A246V 0.09 deleterious(0.05) possibly_damaging(0.775) TCGA-IB-7651-01 16 2569231 2569231 C A RP11-20I23.1 Nonsense_Mutation p.C326* 0.21 TCGA-IB-7651-01 16 2570854 2570854 G A AMDHD2 Silent p.R56R 0.20 TCGA-IB-7651-01 16 2580903 2580903 C T CEMP1 Missense_Mutation p.A58T 0.20 tolerated_low_confidence(0.52) benign(0) TCGA-IB-7651-01 16 27226239 27226239 A G KDM8 Silent p.P274P 0.04 TCGA-IB-7651-01 16 27232124 27232124 T G KDM8 3'UTR 0.19 TCGA-IB-7651-01 16 27460438 27460438 G A IL21R Missense_Mutation p.G484D 0.09 tolerated(0.06) benign(0.324) TCGA-IB-7651-01 16 27473805 27473805 T C GTF3C1 Missense_Mutation p.D1976G 0.11 tolerated(0.17) benign(0.003) TCGA-IB-7651-01 16 27480702 27480702 G T GTF3C1 Missense_Mutation p.L1662I 0.15 tolerated(0.06) probably_damaging(0.997) TCGA-IB-7651-01 16 27500951 27500951 G A GTF3C1 Missense_Mutation p.R1089C 0.18 deleterious(0) probably_damaging(0.912) TCGA-IB-7651-01 16 27503771 27503771 G A GTF3C1 Silent p.N1013N 0.17 TCGA-IB-7651-01 16 27506672 27506672 G A GTF3C1 Missense_Mutation p.T831M 0.14 tolerated(0.11) benign(0.005) TCGA-IB-7651-01 16 27642431 27642431 G A KIAA0556 Missense_Mutation p.R119K 0.31 tolerated(0.34) possibly_damaging(0.748) TCGA-IB-7651-01 16 27751850 27751850 C A KIAA0556 Silent p.I744I 0.22 TCGA-IB-7651-01 16 27790003 27790003 C T KIAA0556 3'UTR 0.18 TCGA-IB-7651-01 16 27818817 27818817 A T GSG1L Missense_Mutation p.Y297N 0.18 tolerated_low_confidence(0.16) benign(0.139) TCGA-IB-7651-01 16 27840187 27840187 C A GSG1L Missense_Mutation p.K251N 0.18 tolerated(0.07) probably_damaging(0.997) TCGA-IB-7651-01 16 27856320 27856320 C T GSG1L Missense_Mutation p.G205S 0.16 deleterious(0) probably_damaging(0.979) TCGA-IB-7651-01 16 28109719 28109719 C T XPO6 3'UTR 0.18 TCGA-IB-7651-01 16 2812144 2812144 C T SRRM2 Nonsense_Mutation p.R539* 0.09 TCGA-IB-7651-01 16 2812267 2812267 C T SRRM2 Missense_Mutation p.R580C 0.06 unknown(0) TCGA-IB-7651-01 16 2815936 2815936 C T SRRM2 Missense_Mutation p.R1803W 0.18 unknown(0) TCGA-IB-7651-01 16 28167624 28167624 C T XPO6 Missense_Mutation p.A290T 0.21 tolerated(0.69) benign(0.004) TCGA-IB-7651-01 16 2817777 2817777 A C SRRM2 Missense_Mutation p.Q2416H 0.17 benign(0.316) TCGA-IB-7651-01 16 2822078 2822078 G A TCEB2 Silent p.I90I 0.07 TCGA-IB-7651-01 16 28331401 28331401 G A SBK1 Missense_Mutation p.G145E 0.24 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 16 28493652 28493652 G A CLN3 Missense_Mutation p.R320C 0.20 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 16 28509778 28509778 C T APOBR Silent p.G1082G 0.23 TCGA-IB-7651-01 16 28596992 28596992 C T CCDC101 Silent p.L59L 0.19 TCGA-IB-7651-01 16 28602223 28602223 C T CCDC101 Silent p.F244F 0.17 TCGA-IB-7651-01 16 28604766 28604766 C A SULT1A2 Nonsense_Mutation p.E166* 0.18 TCGA-IB-7651-01 16 2867430 2867430 G A PRSS21 Splice_Site p.X22_splice 0.13 TCGA-IB-7651-01 16 28734529 28734529 G A EIF3C Missense_Mutation p.R274Q 0.05 tolerated(0.27) benign(0.01) TCGA-IB-7651-01 16 28734551 28734551 G A EIF3C Silent p.K281K 0.09 TCGA-IB-7651-01 16 28837664 28837664 T G ATXN2L Missense_Mutation p.V190G 0.16 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 16 28841994 28841994 C T ATXN2L Nonsense_Mutation p.R365* 0.21 TCGA-IB-7651-01 16 28854270 28854270 G T TUFM 3'UTR 0.15 TCGA-IB-7651-01 16 28877932 28877932 C T SH2B1 Missense_Mutation p.R173W 0.21 deleterious(0) possibly_damaging(0.794) TCGA-IB-7651-01 16 28883991 28883991 T G SH2B1 Missense_Mutation p.L621R 0.05 deleterious(0) possibly_damaging(0.846) TCGA-IB-7651-01 16 28900144 28900144 G A ATP2A1 Missense_Mutation p.G322D 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 28913250 28913250 G A ATP2A1 Missense_Mutation p.G723S 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 28913689 28913689 C T ATP2A1 Missense_Mutation p.R836C 0.08 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 16 28920040 28920040 G A RABEP2 Missense_Mutation p.R379W 0.15 deleterious(0) probably_damaging(0.981) TCGA-IB-7651-01 16 28943379 28943379 C T CD19 Missense_Mutation p.P20S 0.08 tolerated(0.15) probably_damaging(0.986) TCGA-IB-7651-01 16 28995106 28995106 G A SPNS1 Splice_Site p.X441_splice 0.16 TCGA-IB-7651-01 16 28995175 28995175 G A SPNS1 Silent p.S463S 0.17 TCGA-IB-7651-01 16 29367178 29367178 G A SNX29P2 RNA 0.19 TCGA-IB-7651-01 16 29755643 29755643 G A C16orf54 Silent p.I210I 0.13 TCGA-IB-7651-01 16 29809753 29809753 C T KIF22 Nonsense_Mutation p.Q109* 0.19 TCGA-IB-7651-01 16 29810350 29810350 C T KIF22 Missense_Mutation p.R202W 0.13 tolerated(0.05) benign(0.059) TCGA-IB-7651-01 16 29824802 29824802 G T PRRT2 Missense_Mutation p.D143Y 0.25 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-IB-7651-01 16 29825601 29825601 G A PRRT2 Intron 0.06 TCGA-IB-7651-01 16 2983257 2983257 C T FLYWCH1 Missense_Mutation p.A307V 0.15 tolerated(0.19) benign(0.045) TCGA-IB-7651-01 16 29842323 29842323 C T MVP Missense_Mutation p.R84C 0.19 deleterious(0.03) benign(0.13) TCGA-IB-7651-01 16 29853245 29853245 C T MVP Silent p.F482F 0.19 TCGA-IB-7651-01 16 29870526 29870526 C T CDIPT Missense_Mutation p.R209H 0.20 deleterious(0) possibly_damaging(0.848) TCGA-IB-7651-01 16 29874153 29874153 A C CDIPT Missense_Mutation p.F9C 0.17 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 16 29888137 29888137 C T SEZ6L2 Missense_Mutation p.D682N 0.15 deleterious(0.02) possibly_damaging(0.679) TCGA-IB-7651-01 16 29891239 29891239 C T SEZ6L2 Missense_Mutation p.E507K 0.19 deleterious(0) probably_damaging(0.957) TCGA-IB-7651-01 16 29918191 29918191 G T KCTD13 3'UTR 0.22 TCGA-IB-7651-01 16 29982886 29982886 G A TMEM219 3'UTR 0.15 TCGA-IB-7651-01 16 29989137 29989137 T C TAOK2 Missense_Mutation p.V15A 0.19 deleterious_low_confidence(0) benign(0.029) TCGA-IB-7651-01 16 29996816 29996816 C A TAOK2 Missense_Mutation p.L569I 0.20 deleterious(0.03) benign(0.18) TCGA-IB-7651-01 16 29998237 29998237 G A TAOK2 Missense_Mutation p.D882N 0.22 tolerated_low_confidence(0.14) benign(0) TCGA-IB-7651-01 16 29999166 29999166 C T TAOK2 Silent p.P1191P 0.18 TCGA-IB-7651-01 16 30004620 30004620 T C HIRIP3 Missense_Mutation p.T527A 0.21 tolerated(0.18) benign(0.106) TCGA-IB-7651-01 16 30007925 30007925 T C INO80E Missense_Mutation p.S47P 0.13 deleterious(0) probably_damaging(0.981) TCGA-IB-7651-01 16 30021360 30021360 C T DOC2A Missense_Mutation p.A62T 0.19 tolerated(0.32) benign(0.001) TCGA-IB-7651-01 16 30094745 30094745 C A PPP4C Silent p.R112R 0.14 TCGA-IB-7651-01 16 30100374 30100374 G A TBX6 Missense_Mutation p.R171C 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 16 30116209 30116209 G T GDPD3 Missense_Mutation p.A314D 0.19 tolerated(0.26) benign(0.08) TCGA-IB-7651-01 16 3021795 3021795 G A PAQR4 Missense_Mutation p.R223H 0.08 tolerated(0.07) probably_damaging(0.988) TCGA-IB-7651-01 16 3021850 3021850 G A PAQR4 Silent p.Q241Q 0.20 TCGA-IB-7651-01 16 3022958 3022958 G A PKMYT1 Missense_Mutation p.T499I 0.17 deleterious_low_confidence(0.01) benign(0.03) TCGA-IB-7651-01 16 3026775 3026775 C A PKMYT1 Nonsense_Mutation p.E90* 0.29 TCGA-IB-7651-01 16 30370680 30370680 C A TBC1D10B Missense_Mutation p.E485D 0.26 deleterious(0.03) benign(0.439) TCGA-IB-7651-01 16 30392552 30392552 C A SEPT1 Missense_Mutation p.D157Y 0.22 probably_damaging(1) TCGA-IB-7651-01 16 304439 304439 C T ITFG3 Silent p.A9A 0.09 TCGA-IB-7651-01 16 30537047 30537047 C T ZNF768 Silent p.R138R 0.19 TCGA-IB-7651-01 16 30567369 30567369 C T ZNF764 Missense_Mutation p.D125N 0.20 tolerated(0.58) benign(0.043) TCGA-IB-7651-01 16 30581384 30581384 C T ZNF688 Silent p.A228A 0.20 TCGA-IB-7651-01 16 30594073 30594073 G A ZNF785 Silent p.C342C 0.17 TCGA-IB-7651-01 16 3063599 3063599 C T CLDN9 Missense_Mutation p.A79V 0.22 deleterious(0.04) probably_damaging(0.951) TCGA-IB-7651-01 16 30664242 30664242 G A PRR14 Missense_Mutation p.D108N 0.21 tolerated_low_confidence(0.13) benign(0.087) TCGA-IB-7651-01 16 30666370 30666370 G A PRR14 Missense_Mutation p.R360Q 0.21 tolerated(0.05) possibly_damaging(0.704) TCGA-IB-7651-01 16 30667463 30667463 G A PRR14 Missense_Mutation p.R530Q 0.09 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 16 30680146 30680146 G A FBRS Missense_Mutation p.A738T 0.14 possibly_damaging(0.558) TCGA-IB-7651-01 16 30680180 30680180 G A FBRS Missense_Mutation p.R749H 0.20 benign(0.105) TCGA-IB-7651-01 16 3071282 3071282 C T TNFRSF12A Missense_Mutation p.S54F 0.20 tolerated(0.11) possibly_damaging(0.908) TCGA-IB-7651-01 16 30745907 30745907 G T SRCAP Missense_Mutation p.A2234S 0.22 benign(0.341) TCGA-IB-7651-01 16 30749384 30749384 G T SRCAP Nonsense_Mutation p.E2675* 0.10 TCGA-IB-7651-01 16 30750367 30750367 A G SRCAP Silent p.P3002P 0.13 TCGA-IB-7651-01 16 3076711 3076711 A G THOC6 Missense_Mutation p.H172R 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-IB-7651-01 16 30771464 30771464 C T PHKG2 3'UTR 0.20 TCGA-IB-7651-01 16 30778156 30778156 G A RNF40 Missense_Mutation p.R463H 0.25 tolerated(0.08) possibly_damaging(0.779) TCGA-IB-7651-01 16 3078764 3078764 G A CCDC64B Missense_Mutation p.A392V 0.43 tolerated(0.22) benign(0.009) TCGA-IB-7651-01 16 30794890 30794890 C T ZNF629 Silent p.Q253Q 0.21 TCGA-IB-7651-01 16 30996963 30996963 C T AC135048.1 Missense_Mutation p.D191N 0.21 unknown(0) TCGA-IB-7651-01 16 309975 309975 C A ITFG3 Silent p.S131S 0.21 TCGA-IB-7651-01 16 30999191 30999191 G T HSD3B7 Missense_Mutation p.R266M 0.04 tolerated(0.17) benign(0.016) TCGA-IB-7651-01 16 30999413 30999413 G A HSD3B7 Missense_Mutation p.R340H 0.14 deleterious(0.01) possibly_damaging(0.684) TCGA-IB-7651-01 16 31050965 31050965 C T STX4 Missense_Mutation p.A269V 0.19 deleterious(0.01) possibly_damaging(0.741) TCGA-IB-7651-01 16 31051083 31051083 G A STX4 Missense_Mutation p.V285I 0.19 tolerated(0.26) benign(0.001) TCGA-IB-7651-01 16 31072498 31072498 G A ZNF668 Missense_Mutation p.A607V 0.23 deleterious(0.01) possibly_damaging(0.879) TCGA-IB-7651-01 16 31072558 31072558 C T ZNF668 Missense_Mutation p.R587H 0.05 deleterious(0.01) possibly_damaging(0.742) TCGA-IB-7651-01 16 31087864 31087864 C T ZNF646 Silent p.G73G 0.20 TCGA-IB-7651-01 16 31088351 31088351 G A ZNF646 Missense_Mutation p.E236K 0.23 deleterious(0) probably_damaging(0.969) TCGA-IB-7651-01 16 31089384 31089384 G A ZNF646 Missense_Mutation p.C580Y 0.15 deleterious(0.01) benign(0.003) TCGA-IB-7651-01 16 31096484 31096484 G A PRSS53 Silent p.G327G 0.21 TCGA-IB-7651-01 16 31104708 31104708 G T VKORC1 Missense_Mutation p.L70M 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-IB-7651-01 16 31104728 31104728 A G VKORC1 Missense_Mutation p.F63S 0.17 deleterious(0) probably_damaging(0.98) TCGA-IB-7651-01 16 31157151 31157151 G T PRSS36 Missense_Mutation p.L227M 0.17 tolerated(0.05) probably_damaging(0.998) TCGA-IB-7651-01 16 3117423 3117423 C T IL32 Intron 0.19 TCGA-IB-7651-01 16 31202336 31202336 C T FUS Silent p.G482G 0.17 TCGA-IB-7651-01 16 31289327 31289327 G A ITGAM Missense_Mutation p.S418N 0.18 tolerated(0.23) benign(0.003) TCGA-IB-7651-01 16 31382482 31382482 G T ITGAX Missense_Mutation p.Q596H 0.07 tolerated(0.13) benign(0.126) TCGA-IB-7651-01 16 3139531 3139531 C T ZSCAN10 Missense_Mutation p.R580H 0.17 tolerated(0.06) probably_damaging(0.921) TCGA-IB-7651-01 16 31422117 31422117 G A ITGAD Missense_Mutation p.R425H 0.19 deleterious(0.02) probably_damaging(0.993) TCGA-IB-7651-01 16 3142764 3142764 G A ZSCAN10 Missense_Mutation p.R4W 0.23 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 31499495 31499495 G T SLC5A2 Splice_Site p.X341_splice 0.18 TCGA-IB-7651-01 16 31501753 31501753 G A SLC5A2 Missense_Mutation p.R639Q 0.26 tolerated(0.16) benign(0.001) TCGA-IB-7651-01 16 3170128 3170128 G A ZNF205 Silent p.S489S 0.19 TCGA-IB-7651-01 16 31766669 31766669 C T ZNF720 Intron 0.15 TCGA-IB-7651-01 16 3187397 3187397 G T ZNF213 Missense_Mutation p.R39M 0.16 deleterious(0.05) possibly_damaging(0.855) TCGA-IB-7651-01 16 3191230 3191230 G A ZNF213 Missense_Mutation p.R421H 0.20 deleterious(0) benign(0.397) TCGA-IB-7651-01 16 31925867 31925867 A G ZNF267 Missense_Mutation p.I99M 0.21 tolerated(0.2) benign(0.105) TCGA-IB-7651-01 16 31926727 31926727 G A ZNF267 Missense_Mutation p.S386N 0.23 deleterious(0.01) benign(0.431) TCGA-IB-7651-01 16 31927189 31927189 G T ZNF267 Missense_Mutation p.R540I 0.15 tolerated(0.26) possibly_damaging(0.447) TCGA-IB-7651-01 16 31927755 31927755 T C ZNF267 Missense_Mutation p.S729P 0.12 deleterious(0.01) possibly_damaging(0.879) TCGA-IB-7651-01 16 32063575 32063575 G A AC142381.1 Missense_Mutation p.D89N 0.15 possibly_damaging(0.496) TCGA-IB-7651-01 16 3293600 3293600 C T MEFV Silent p.L629L 0.18 TCGA-IB-7651-01 16 33020833 33020833 G A IGHV3OR16-8 Missense_Mutation p.D81N 0.17 tolerated_low_confidence(0.12) benign(0.064) TCGA-IB-7651-01 16 331765 331765 G A ARHGDIG Silent p.E31E 0.18 TCGA-IB-7651-01 16 3333885 3333885 G A ZNF263 Missense_Mutation p.A23T 0.11 tolerated(0.54) benign(0.001) TCGA-IB-7651-01 16 3338556 3338556 G T ZNF263 Missense_Mutation p.R291I 0.13 tolerated(0.17) benign(0.091) TCGA-IB-7651-01 16 3340643 3340643 G A ZNF263 3'UTR 0.21 TCGA-IB-7651-01 16 335387 335387 C T PDIA2 Missense_Mutation p.R291W 0.24 deleterious(0.01) possibly_damaging(0.849) TCGA-IB-7651-01 16 3406685 3406685 T C OR2C1 Missense_Mutation p.F249L 0.22 tolerated(0.45) benign(0.003) TCGA-IB-7651-01 16 3432681 3432681 G A ZSCAN32 3'UTR 0.17 TCGA-IB-7651-01 16 34624243 34624243 G A RP11-488I20.3 RNA 0.24 TCGA-IB-7651-01 16 347979 347979 G A AXIN1 Silent p.A509A 0.19 TCGA-IB-7651-01 16 3533542 3533542 G T NAA60 Missense_Mutation p.D173Y 0.19 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 16 3544819 3544819 G A C16orf90 Silent p.Y35Y 0.20 TCGA-IB-7651-01 16 3569998 3569998 A G CLUAP1 Silent p.E225E 0.20 TCGA-IB-7651-01 16 360044 360044 G A AXIN1 Missense_Mutation p.R349C 0.16 deleterious(0) possibly_damaging(0.832) TCGA-IB-7651-01 16 3613437 3613437 G A NLRC3 Missense_Mutation p.R548W 0.30 deleterious(0) possibly_damaging(0.696) TCGA-IB-7651-01 16 3614177 3614177 C T NLRC3 Missense_Mutation p.R301H 0.06 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 16 3614447 3614447 T C NLRC3 Missense_Mutation p.H211R 0.19 tolerated(1) benign(0) TCGA-IB-7651-01 16 3639877 3639877 C T SLX4 Silent p.S1254S 0.21 TCGA-IB-7651-01 16 3640331 3640331 C T SLX4 Missense_Mutation p.R1103H 0.17 tolerated(0.54) benign(0.003) TCGA-IB-7651-01 16 3640459 3640459 C T SLX4 Silent p.R1060R 0.20 TCGA-IB-7651-01 16 3641221 3641221 C A SLX4 Missense_Mutation p.E806D 0.18 tolerated(0.1) benign(0.092) TCGA-IB-7651-01 16 3646371 3646371 C T SLX4 Silent p.P569P 0.13 TCGA-IB-7651-01 16 3713514 3713514 C T TRAP1 Missense_Mutation p.R540H 0.09 tolerated(0.13) benign(0.048) TCGA-IB-7651-01 16 3722703 3722703 C T TRAP1 Missense_Mutation p.R388Q 0.27 deleterious(0.04) possibly_damaging(0.904) TCGA-IB-7651-01 16 3724437 3724437 C T TRAP1 Missense_Mutation p.R316H 0.13 deleterious(0.02) probably_damaging(0.994) TCGA-IB-7651-01 16 3740954 3740954 C A TRAP1 Missense_Mutation p.A41S 0.17 tolerated(0.55) benign(0.034) TCGA-IB-7651-01 16 3778862 3778862 G A CREBBP Silent p.I2062I 0.06 TCGA-IB-7651-01 16 3807335 3807335 G T CREBBP Missense_Mutation p.L1218M 0.18 unknown(0) TCGA-IB-7651-01 16 4029235 4029235 C T ADCY9 Missense_Mutation p.R854H 0.17 tolerated(0.55) benign(0.001) TCGA-IB-7651-01 16 4163832 4163832 A G ADCY9 Missense_Mutation p.Y538H 0.21 deleterious(0) probably_damaging(0.956) TCGA-IB-7651-01 16 419132 419132 G A MRPL28 Missense_Mutation p.T126I 0.19 deleterious(0) possibly_damaging(0.642) TCGA-IB-7651-01 16 426714 426714 G A TMEM8A Missense_Mutation p.P245L 0.12 tolerated(0.05) benign(0.001) TCGA-IB-7651-01 16 436929 436929 G A TMEM8A 5'Flank 0.20 TCGA-IB-7651-01 16 4382440 4382440 C G GLIS2 Silent p.G53G 0.23 TCGA-IB-7651-01 16 4383390 4383390 G A GLIS2 Missense_Mutation p.R72H 0.06 tolerated_low_confidence(0.26) possibly_damaging(0.805) TCGA-IB-7651-01 16 4386911 4386911 G A GLIS2 Missense_Mutation p.V321M 0.17 deleterious(0) probably_damaging(0.955) TCGA-IB-7651-01 16 4409543 4409543 C T CORO7 Missense_Mutation p.A730T 0.15 tolerated(0.07) probably_damaging(1) TCGA-IB-7651-01 16 449418 449418 C T NME4 Missense_Mutation p.R89W 0.22 deleterious(0) possibly_damaging(0.641) TCGA-IB-7651-01 16 450426 450426 G A NME4 3'UTR 0.19 TCGA-IB-7651-01 16 461408 461408 C T DECR2 Nonsense_Mutation p.Q237* 0.19 TCGA-IB-7651-01 16 46629512 46629512 C T SHCBP1 Silent p.R472R 0.11 TCGA-IB-7651-01 16 46843515 46843515 C T C16orf87 Missense_Mutation p.E116K 0.09 tolerated(0.09) possibly_damaging(0.636) TCGA-IB-7651-01 16 46918680 46918680 G T GPT2 Missense_Mutation p.S18I 0.31 deleterious(0.03) benign(0.024) TCGA-IB-7651-01 16 46962986 46962986 G A GPT2 3'UTR 0.23 TCGA-IB-7651-01 16 47001552 47001552 G A DNAJA2 Silent p.G150G 0.20 TCGA-IB-7651-01 16 47189570 47189570 G A ITFG1 3'UTR 0.21 TCGA-IB-7651-01 16 47195737 47195737 G A ITFG1 Nonsense_Mutation p.R529* 0.18 TCGA-IB-7651-01 16 4732890 4732890 C T MGRN1 Silent p.D475D 0.19 TCGA-IB-7651-01 16 4755101 4755101 C T ANKS3 Missense_Mutation p.R288H 0.07 tolerated(0.12) benign(0.001) TCGA-IB-7651-01 16 47622859 47622859 T C PHKB Missense_Mutation p.F305S 0.05 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 4764060 4764060 C T ANKS3 Missense_Mutation p.R234Q 0.20 deleterious(0.03) benign(0.387) TCGA-IB-7651-01 16 47703196 47703196 A G PHKB Missense_Mutation p.N833S 0.18 tolerated(0.69) benign(0.043) TCGA-IB-7651-01 16 47727313 47727313 C T PHKB Silent p.I930I 0.18 TCGA-IB-7651-01 16 47730390 47730390 C T PHKB Silent p.I998I 0.15 TCGA-IB-7651-01 16 4780014 4780014 C T ANKS3 Missense_Mutation p.G46D 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 4786573 4786573 A C C16orf71 Missense_Mutation p.M20L 0.20 tolerated(0.83) benign(0.004) TCGA-IB-7651-01 16 4790160 4790160 C T C16orf71 Silent p.L95L 0.05 TCGA-IB-7651-01 16 48117575 48117575 C A ABCC12 3'UTR 0.12 TCGA-IB-7651-01 16 4815977 4815977 C T ZNF500 Translation_Start_Site p.M1? 0.19 deleterious(0) possibly_damaging(0.775) TCGA-IB-7651-01 16 48180384 48180384 C A ABCC12 5'UTR 0.11 TCGA-IB-7651-01 16 48221197 48221197 C T ABCC11 Missense_Mutation p.A950T 0.14 tolerated(0.11) benign(0.028) TCGA-IB-7651-01 16 48381426 48381426 G A LONP2 Silent p.Q649Q 0.16 TCGA-IB-7651-01 16 48382140 48382140 G A LONP2 Missense_Mutation p.R759Q 0.17 deleterious(0.05) benign(0.2) TCGA-IB-7651-01 16 48385520 48385520 C T LONP2 Missense_Mutation p.A789V 0.20 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 16 48587468 48587468 G A N4BP1 Missense_Mutation p.R668C 0.21 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 16 4902975 4902975 G A UBN1 Silent p.A19A 0.08 TCGA-IB-7651-01 16 4927465 4927465 G A UBN1 Silent p.Q1115Q 0.20 TCGA-IB-7651-01 16 49313192 49313192 C T CBLN1 3'UTR 0.24 TCGA-IB-7651-01 16 4934369 4934369 C T PPL Silent p.A1429A 0.21 TCGA-IB-7651-01 16 4934822 4934822 G A PPL Silent p.A1278A 0.20 TCGA-IB-7651-01 16 4938987 4938987 C A PPL Missense_Mutation p.A797S 0.19 tolerated(0.06) probably_damaging(0.979) TCGA-IB-7651-01 16 49407930 49407930 G A C16orf78 Missense_Mutation p.R27H 0.14 deleterious(0) possibly_damaging(0.708) TCGA-IB-7651-01 16 49433071 49433071 G A C16orf78 Missense_Mutation p.R227Q 0.17 tolerated(0.1) benign(0.027) TCGA-IB-7651-01 16 49669765 49669765 C T ZNF423 Missense_Mutation p.A1100T 0.18 tolerated(0.82) benign(0) TCGA-IB-7651-01 16 49670091 49670091 C T ZNF423 Missense_Mutation p.R991H 0.19 tolerated(0.07) probably_damaging(0.924) TCGA-IB-7651-01 16 50102776 50102776 G T HEATR3 Nonsense_Mutation p.E133* 0.20 TCGA-IB-7651-01 16 50104168 50104168 C T HEATR3 Missense_Mutation p.A160V 0.15 tolerated(0.06) possibly_damaging(0.724) TCGA-IB-7651-01 16 50138873 50138873 C A HEATR3 Missense_Mutation p.N648K 0.08 tolerated(1) benign(0) TCGA-IB-7651-01 16 50338418 50338418 G A ADCY7 Missense_Mutation p.V506M 0.17 tolerated(0.58) probably_damaging(0.998) TCGA-IB-7651-01 16 50348221 50348221 G A ADCY7 Missense_Mutation p.A959T 0.12 tolerated(0.34) benign(0.309) TCGA-IB-7651-01 16 50402680 50402680 G A BRD7 Silent p.G2G 0.19 TCGA-IB-7651-01 16 5041991 5041991 T C SEC14L5 Silent p.R209R 0.25 TCGA-IB-7651-01 16 5053443 5053443 C T SEC14L5 Missense_Mutation p.R391W 0.19 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 16 50583467 50583467 G A NKD1 Splice_Site p.X64_splice 0.15 TCGA-IB-7651-01 16 50667286 50667286 G A NKD1 Missense_Mutation p.R336Q 0.16 deleterious(0.04) possibly_damaging(0.496) TCGA-IB-7651-01 16 50745198 50745198 G A NOD2 Missense_Mutation p.R459H 0.10 tolerated(0.64) benign(0.002) TCGA-IB-7651-01 16 50745492 50745492 G A NOD2 Missense_Mutation p.G557D 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 50746021 50746021 G A NOD2 Silent p.V733V 0.17 TCGA-IB-7651-01 16 50815323 50815323 G T CYLD Splice_Site p.X562_splice 0.16 TCGA-IB-7651-01 16 5083700 5083700 G A NAGPA Missense_Mutation p.P39L 0.12 probably_damaging(0.953) TCGA-IB-7651-01 16 51174870 51174870 G T SALL1 Silent p.A421A 0.17 TCGA-IB-7651-01 16 5143482 5143482 G T FAM86A Intron 0.20 TCGA-IB-7651-01 16 52473589 52473589 C T TOX3 Missense_Mutation p.A427T 0.19 tolerated_low_confidence(0.15) possibly_damaging(0.811) TCGA-IB-7651-01 16 53190488 53190488 G A CHD9 Missense_Mutation p.A163T 0.05 benign(0.16) TCGA-IB-7651-01 16 53191042 53191042 T C CHD9 Silent p.G347G 0.18 TCGA-IB-7651-01 16 532617 532617 G A RAB11FIP3 Silent p.V332V 0.21 TCGA-IB-7651-01 16 53288395 53288395 G A CHD9 Missense_Mutation p.V1303I 0.16 possibly_damaging(0.73) TCGA-IB-7651-01 16 53338106 53338106 C A CHD9 Missense_Mutation p.S2063Y 0.15 probably_damaging(0.953) TCGA-IB-7651-01 16 53514557 53514557 C A RBL2 Missense_Mutation p.P987H 0.16 deleterious(0) possibly_damaging(0.622) TCGA-IB-7651-01 16 53515625 53515625 G A RBL2 Missense_Mutation p.G1043S 0.19 tolerated(0.35) benign(0.002) TCGA-IB-7651-01 16 53529183 53529183 A G AKTIP Missense_Mutation p.S102P 0.10 deleterious(0.01) probably_damaging(0.966) TCGA-IB-7651-01 16 53532472 53532472 C T AKTIP Missense_Mutation p.V27M 0.17 tolerated(0.34) benign(0.033) TCGA-IB-7651-01 16 53534196 53534196 T G AKTIP 5'UTR 0.19 TCGA-IB-7651-01 16 53686654 53686654 G A RPGRIP1L Nonsense_Mutation p.R649* 0.21 TCGA-IB-7651-01 16 54145726 54145726 C T FTO Missense_Mutation p.R473W 0.04 tolerated(0.09) benign(0.017) TCGA-IB-7651-01 16 54967479 54967479 G A IRX5 Silent p.P382P 0.20 TCGA-IB-7651-01 16 55361564 55361564 A G IRX6 Silent p.T160T 0.20 TCGA-IB-7651-01 16 55361590 55361590 G A IRX6 Missense_Mutation p.R169H 0.20 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 16 55517011 55517011 G A MMP2 Missense_Mutation p.R115H 0.20 deleterious(0.02) benign(0.363) TCGA-IB-7651-01 16 55523659 55523659 G A MMP2 Missense_Mutation p.R368H 0.21 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 16 55706056 55706056 T C SLC6A2 Missense_Mutation p.Y205H 0.17 tolerated(0.54) benign(0.078) TCGA-IB-7651-01 16 55883597 55883597 G A CES5A Silent p.H483H 0.17 TCGA-IB-7651-01 16 55903635 55903635 C A CES5A Missense_Mutation p.G176C 0.25 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 16 55905609 55905609 G A CES5A Silent p.F144F 0.17 TCGA-IB-7651-01 16 56385326 56385326 G A GNAO1 3'Flank 0.13 TCGA-IB-7651-01 16 56437031 56437031 C T AMFR Splice_Site p.X281_splice 0.16 TCGA-IB-7651-01 16 56519606 56519606 C T BBS2 Missense_Mutation p.R652K 0.21 tolerated(0.39) benign(0.027) TCGA-IB-7651-01 16 56548368 56548368 T A BBS2 Missense_Mutation p.R114S 0.19 deleterious(0) benign(0.127) TCGA-IB-7651-01 16 56666669 56666669 C T MT1M Missense_Mutation p.T9I 0.13 deleterious(0.01) possibly_damaging(0.803) TCGA-IB-7651-01 16 56667670 56667670 C A MT1M Nonsense_Mutation p.C34* 0.15 TCGA-IB-7651-01 16 56704811 56704811 C A MT1H Missense_Mutation p.S32R 0.07 deleterious(0.01) unknown(0) TCGA-IB-7651-01 16 56867301 56867301 G A NUP93 Missense_Mutation p.G507E 0.20 tolerated(0.56) benign(0.186) TCGA-IB-7651-01 16 56906698 56906698 G T SLC12A3 Missense_Mutation p.K365N 0.18 deleterious(0.01) possibly_damaging(0.862) TCGA-IB-7651-01 16 56926867 56926867 G T SLC12A3 Missense_Mutation p.D817Y 0.17 deleterious(0.01) benign(0.336) TCGA-IB-7651-01 16 56977193 56977193 C T HERPUD1 Silent p.I389I 0.18 TCGA-IB-7651-01 16 57060576 57060576 G A NLRC5 Missense_Mutation p.R574H 0.09 tolerated(0.17) benign(0.014) TCGA-IB-7651-01 16 57068112 57068112 C T NLRC5 Missense_Mutation p.A859V 0.12 tolerated(0.47) benign(0.012) TCGA-IB-7651-01 16 57077468 57077468 T C NLRC5 Missense_Mutation p.L1052S 0.19 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 16 57091998 57091998 C T NLRC5 Silent p.G1256G 0.20 TCGA-IB-7651-01 16 57116360 57116360 G A NLRC5 Missense_Mutation p.A1841T 0.15 deleterious(0) probably_damaging(0.918) TCGA-IB-7651-01 16 57149461 57149461 C T CPNE2 Missense_Mutation p.T145M 0.21 deleterious(0.05) benign(0.085) TCGA-IB-7651-01 16 57188214 57188214 G A FAM192A Silent p.L251L 0.15 TCGA-IB-7651-01 16 57290762 57290762 G T PLLP 3'UTR 0.11 TCGA-IB-7651-01 16 57290796 57290796 G A PLLP 3'UTR 0.15 TCGA-IB-7651-01 16 57416775 57416775 C T CX3CL1 Missense_Mutation p.A342V 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 16 57463101 57463101 C A CIAPIN1 Missense_Mutation p.S307I 0.18 deleterious(0.05) benign(0.123) TCGA-IB-7651-01 16 57490413 57490413 T C COQ9 Intron 0.20 TCGA-IB-7651-01 16 57490417 57490417 C T COQ9 Missense_Mutation p.S127F 0.20 deleterious(0) possibly_damaging(0.62) TCGA-IB-7651-01 16 57507359 57507359 T G DOK4 Missense_Mutation p.N304T 0.18 deleterious_low_confidence(0.01) benign(0.064) TCGA-IB-7651-01 16 57509522 57509522 A C DOK4 Missense_Mutation p.I62S 0.22 deleterious(0) possibly_damaging(0.857) TCGA-IB-7651-01 16 57689823 57689823 C T GPR56 Silent p.V312V 0.17 TCGA-IB-7651-01 16 57693425 57693425 A G GPR56 Missense_Mutation p.T469A 0.19 tolerated(0.4) benign(0.006) TCGA-IB-7651-01 16 57732027 57732027 C A CCDC135 Missense_Mutation p.L56M 0.16 tolerated(0.06) probably_damaging(0.97) TCGA-IB-7651-01 16 57762411 57762411 C T CCDC135 Missense_Mutation p.A769V 0.17 deleterious(0.04) possibly_damaging(0.666) TCGA-IB-7651-01 16 57789369 57789369 A G KATNB1 Missense_Mutation p.D510G 0.16 deleterious(0.02) possibly_damaging(0.904) TCGA-IB-7651-01 16 57792813 57792813 G A KIFC3 Missense_Mutation p.R829W 0.15 deleterious_low_confidence(0) possibly_damaging(0.596) TCGA-IB-7651-01 16 57794323 57794323 G T KIFC3 Silent p.S746S 0.15 TCGA-IB-7651-01 16 57798095 57798095 G A KIFC3 Missense_Mutation p.A526V 0.14 deleterious(0) probably_damaging(0.978) TCGA-IB-7651-01 16 57803523 57803523 C A KIFC3 Missense_Mutation p.R401M 0.18 deleterious(0.03) benign(0.195) TCGA-IB-7651-01 16 57918346 57918346 C A CNGB1 Missense_Mutation p.D1160Y 0.17 deleterious(0) probably_damaging(0.927) TCGA-IB-7651-01 16 57957180 57957180 G T CNGB1 Missense_Mutation p.T547N 0.13 tolerated(0.11) benign(0.368) TCGA-IB-7651-01 16 57973480 57973480 A C CNGB1 Missense_Mutation p.V409G 0.19 tolerated(0.38) benign(0) TCGA-IB-7651-01 16 57998403 57998403 G A CNGB1 Missense_Mutation p.P69S 0.18 tolerated_low_confidence(0.09) benign(0.08) TCGA-IB-7651-01 16 58031620 58031620 G T ZNF319 Missense_Mutation p.P184T 0.21 tolerated(0.58) possibly_damaging(0.908) TCGA-IB-7651-01 16 58079274 58079274 C T MMP15 Missense_Mutation p.A645V 0.25 tolerated(0.25) probably_damaging(0.923) TCGA-IB-7651-01 16 58292383 58292383 A C CCDC113 Missense_Mutation p.T168P 0.20 deleterious(0.04) benign(0.178) TCGA-IB-7651-01 16 58318538 58318538 C T PRSS54 Missense_Mutation p.E204K 0.20 tolerated(0.12) benign(0.253) TCGA-IB-7651-01 16 58319950 58319950 G A PRSS54 Missense_Mutation p.A138V 0.08 deleterious(0.02) probably_damaging(0.93) TCGA-IB-7651-01 16 58438412 58438412 G A GINS3 Missense_Mutation p.G183R 0.19 tolerated(0.06) benign(0.168) TCGA-IB-7651-01 16 58537860 58537860 C T NDRG4 Intron 0.18 TCGA-IB-7651-01 16 58538164 58538164 G A NDRG4 Silent p.S130S 0.17 TCGA-IB-7651-01 16 58545414 58545414 C A NDRG4 Silent p.A370A 0.23 TCGA-IB-7651-01 16 58550529 58550529 C A SETD6 Silent p.R208R 0.18 TCGA-IB-7651-01 16 58621318 58621318 C T CNOT1 Splice_Site p.X104_splice 0.17 TCGA-IB-7651-01 16 58711301 58711301 G A SLC38A7 Silent p.Y213Y 0.10 TCGA-IB-7651-01 16 58713944 58713944 G A SLC38A7 Silent p.P29P 0.15 TCGA-IB-7651-01 16 598072 598072 C T CAPN15 Missense_Mutation p.R412C 0.20 deleterious(0.02) benign(0.022) TCGA-IB-7651-01 16 599006 599006 T G CAPN15 Missense_Mutation p.F488C 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 599309 599309 G A CAPN15 Silent p.V560V 0.24 TCGA-IB-7651-01 16 601376 601376 G A CAPN15 Missense_Mutation p.R714H 0.19 deleterious(0.03) probably_damaging(1) TCGA-IB-7651-01 16 602440 602440 G A CAPN15 Missense_Mutation p.D883N 0.19 tolerated(0.27) probably_damaging(0.973) TCGA-IB-7651-01 16 61761071 61761071 T C CDH8 Missense_Mutation p.D488G 0.19 deleterious(0) possibly_damaging(0.76) TCGA-IB-7651-01 16 624165 624165 G A PIGQ Missense_Mutation p.V31M 0.26 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-IB-7651-01 16 628425 628425 C T PIGQ Missense_Mutation p.A330V 0.16 tolerated(0.41) benign(0.16) TCGA-IB-7651-01 16 633231 633231 G T PIGQ Missense_Mutation p.R627M 0.03 deleterious_low_confidence(0) benign(0.192) TCGA-IB-7651-01 16 633554 633554 G A PIGQ Missense_Mutation p.V735I 0.08 deleterious_low_confidence(0.03) benign(0.103) TCGA-IB-7651-01 16 64981786 64981786 G T CDH11 Missense_Mutation p.P704H 0.04 tolerated(0.43) possibly_damaging(0.87) TCGA-IB-7651-01 16 65005935 65005935 C T CDH11 Missense_Mutation p.A475T 0.13 tolerated(0.44) benign(0.138) TCGA-IB-7651-01 16 65038694 65038694 G A CDH11 Missense_Mutation p.R27W 0.19 deleterious(0.03) benign(0.249) TCGA-IB-7651-01 16 66420804 66420804 C T CDH5 Silent p.D101D 0.15 TCGA-IB-7651-01 16 66429998 66429998 C A CDH5 Missense_Mutation p.F418L 0.21 tolerated(0.19) benign(0.403) TCGA-IB-7651-01 16 66431887 66431887 A G CDH5 Missense_Mutation p.T455A 0.15 tolerated(0.52) benign(0.008) TCGA-IB-7651-01 16 66436913 66436913 C T CDH5 Silent p.G732G 0.21 TCGA-IB-7651-01 16 66785491 66785491 C A DYNC1LI2 Missense_Mutation p.A2S 0.20 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-IB-7651-01 16 66956090 66956090 C A RRAD Missense_Mutation p.E272D 0.09 deleterious(0.04) probably_damaging(0.96) TCGA-IB-7651-01 16 67006262 67006262 C T CES3 Missense_Mutation p.S432F 0.17 deleterious(0.03) possibly_damaging(0.816) TCGA-IB-7651-01 16 67006910 67006910 G A CES3 Nonsense_Mutation p.W558* 0.10 TCGA-IB-7651-01 16 67154021 67154021 C T C16orf70 Missense_Mutation p.P24L 0.16 tolerated(0.12) probably_damaging(0.972) TCGA-IB-7651-01 16 67168323 67168323 G A C16orf70 Missense_Mutation p.R205Q 0.19 deleterious(0.02) possibly_damaging(0.507) TCGA-IB-7651-01 16 67183522 67183522 G A B3GNT9 Silent p.G289G 0.14 TCGA-IB-7651-01 16 67190432 67190432 A G TRADD Silent p.A44A 0.17 TCGA-IB-7651-01 16 67199722 67199722 G A HSF4 Silent p.E111E 0.15 TCGA-IB-7651-01 16 67214084 67214084 G A KIAA0895L Missense_Mutation p.R144W 0.07 deleterious(0) benign(0.046) TCGA-IB-7651-01 16 67214520 67214520 C A KIAA0895L 5'UTR 0.23 TCGA-IB-7651-01 16 67221403 67221403 G T EXOC3L1 Silent p.G255G 0.10 TCGA-IB-7651-01 16 67228615 67228615 G T E2F4 Missense_Mutation p.Q180H 0.18 deleterious(0) benign(0.412) TCGA-IB-7651-01 16 67229753 67229753 A T E2F4 Missense_Mutation p.T293S 0.14 tolerated(1) benign(0) TCGA-IB-7651-01 16 67229844 67229844 G T E2F4 Missense_Mutation p.S323I 0.19 tolerated(0.29) benign(0.031) TCGA-IB-7651-01 16 67232131 67232131 G A E2F4 3'UTR 0.10 TCGA-IB-7651-01 16 67233304 67233304 C T ELMO3 Silent p.D78D 0.10 TCGA-IB-7651-01 16 67233635 67233635 G A ELMO3 Silent p.G109G 0.17 TCGA-IB-7651-01 16 67237764 67237764 G A ELMO3 Missense_Mutation p.S769N 0.22 tolerated_low_confidence(0.19) benign(0.341) TCGA-IB-7651-01 16 67289057 67289057 C T SLC9A5 Silent p.G208G 0.18 TCGA-IB-7651-01 16 67292264 67292264 C T SLC9A5 Nonsense_Mutation p.R514* 0.19 TCGA-IB-7651-01 16 67333397 67333397 C T KCTD19 Silent p.P285P 0.15 TCGA-IB-7651-01 16 67429051 67429051 A C ZDHHC1 Missense_Mutation p.W362G 0.14 tolerated_low_confidence(0.47) benign(0) TCGA-IB-7651-01 16 67432548 67432548 C T ZDHHC1 Missense_Mutation p.A248T 0.21 deleterious(0.04) possibly_damaging(0.837) TCGA-IB-7651-01 16 67432784 67432784 T C ZDHHC1 Silent p.T198T 0.11 TCGA-IB-7651-01 16 67472426 67472426 G T ATP6V0D1 3'UTR 0.13 TCGA-IB-7651-01 16 67472759 67472759 G A ATP6V0D1 Silent p.L277L 0.18 TCGA-IB-7651-01 16 67574550 67574550 G A FAM65A Silent p.V268V 0.17 TCGA-IB-7651-01 16 67578324 67578324 G A FAM65A Missense_Mutation p.R928H 0.19 tolerated(0.32) benign(0.031) TCGA-IB-7651-01 16 67578667 67578667 C T FAM65A Nonsense_Mutation p.R955* 0.20 TCGA-IB-7651-01 16 67579738 67579738 C T FAM65A Missense_Mutation p.S1141L 0.09 deleterious(0) possibly_damaging(0.637) TCGA-IB-7651-01 16 67580422 67580422 G T FAM65A 3'UTR 0.18 TCGA-IB-7651-01 16 676048 676048 C T RAB40C Silent p.I164I 0.19 TCGA-IB-7651-01 16 67645871 67645871 C T CTCF Nonsense_Mutation p.Q267* 0.08 TCGA-IB-7651-01 16 67662366 67662366 C A CTCF Missense_Mutation p.L538I 0.20 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 16 67680837 67680837 G A RLTPR Missense_Mutation p.R191H 0.17 deleterious(0) possibly_damaging(0.573) TCGA-IB-7651-01 16 67702121 67702121 G A C16orf86 Missense_Mutation p.R191Q 0.19 deleterious(0) benign(0.417) TCGA-IB-7651-01 16 67708887 67708887 T G GFOD2 3'UTR 0.16 TCGA-IB-7651-01 16 677435 677435 G A RAB40C Missense_Mutation p.S220N 0.15 deleterious_low_confidence(0.03) probably_damaging(0.977) TCGA-IB-7651-01 16 67865777 67865777 G T CENPT Missense_Mutation p.P135T 0.24 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 16 67914671 67914671 C T EDC4 Missense_Mutation p.A770V 0.20 deleterious_low_confidence(0) possibly_damaging(0.723) TCGA-IB-7651-01 16 67918754 67918754 C T NRN1L 5'UTR 0.17 TCGA-IB-7651-01 16 67969889 67969889 G A PSMB10 Silent p.R120R 0.19 TCGA-IB-7651-01 16 67980961 67980961 T G SLC12A4 Missense_Mutation p.K709T 0.09 tolerated(0.07) possibly_damaging(0.611) TCGA-IB-7651-01 16 67984390 67984390 G A SLC12A4 Silent p.G489G 0.18 TCGA-IB-7651-01 16 68011244 68011244 C T DPEP3 Missense_Mutation p.G341D 0.20 deleterious(0.02) probably_damaging(0.924) TCGA-IB-7651-01 16 68055940 68055940 T C DDX28 Missense_Mutation p.D389G 0.19 tolerated(0.26) benign(0.003) TCGA-IB-7651-01 16 68156009 68156009 T C NFATC3 Missense_Mutation p.S75P 0.21 tolerated(0.13) possibly_damaging(0.701) TCGA-IB-7651-01 16 68156483 68156483 C T NFATC3 Missense_Mutation p.H233Y 0.16 tolerated(0.22) benign(0.201) TCGA-IB-7651-01 16 68264135 68264135 A C ESRP2 Missense_Mutation p.C716W 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IB-7651-01 16 68264366 68264366 C T ESRP2 Missense_Mutation p.A664T 0.18 tolerated(0.15) benign(0.088) TCGA-IB-7651-01 16 68289666 68289666 C T PLA2G15 Intron 0.21 TCGA-IB-7651-01 16 68293398 68293398 C T PLA2G15 Silent p.G359G 0.17 TCGA-IB-7651-01 16 68293564 68293564 C T PLA2G15 3'UTR 0.18 TCGA-IB-7651-01 16 68373238 68373238 C T PRMT7 Missense_Mutation p.A173V 0.16 tolerated(0.4) benign(0.007) TCGA-IB-7651-01 16 68404770 68404770 A G SMPD3 Missense_Mutation p.F439L 0.20 tolerated(0.15) benign(0.217) TCGA-IB-7651-01 16 68405851 68405851 C T SMPD3 Silent p.A78A 0.16 TCGA-IB-7651-01 16 68406102 68406102 C T SMPD3 5'UTR 0.10 TCGA-IB-7651-01 16 68863587 68863587 C A CDH1 Missense_Mutation p.L776M 0.17 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 16 69143880 69143880 C T HAS3 Silent p.R194R 0.22 TCGA-IB-7651-01 16 69148647 69148647 C A HAS3 Silent p.T380T 0.21 TCGA-IB-7651-01 16 69155371 69155371 G A CHTF8 5'UTR 0.18 TCGA-IB-7651-01 16 69199419 69199419 A C CIRH1A Missense_Mutation p.D608A 0.19 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 16 69395344 69395344 C T TERF2 Silent p.E421E 0.16 TCGA-IB-7651-01 16 69725910 69725910 C T NFAT5 Nonsense_Mutation p.Q728* 0.19 TCGA-IB-7651-01 16 69725929 69725929 C T NFAT5 Missense_Mutation p.T734I 0.17 benign(0.005) TCGA-IB-7651-01 16 697444 697444 T G FAM195A Silent p.R70R 0.20 TCGA-IB-7651-01 16 69922018 69922018 C A WWP2 Silent p.P260P 0.17 TCGA-IB-7651-01 16 69959102 69959102 T G WWP2 Intron 0.16 TCGA-IB-7651-01 16 69971090 69971090 C T WWP2 Silent p.N729N 0.20 TCGA-IB-7651-01 16 70055733 70055733 A G PDXDC2P RNA 0.11 TCGA-IB-7651-01 16 70055741 70055741 G A PDXDC2P RNA 0.11 TCGA-IB-7651-01 16 701862 701862 G A WDR90 Silent p.P292P 0.17 TCGA-IB-7651-01 16 70190411 70190411 C T PDPR Nonsense_Mutation p.Q757* 0.11 TCGA-IB-7651-01 16 702503 702503 G A WDR90 Missense_Mutation p.V364I 0.18 tolerated(1) benign(0.005) TCGA-IB-7651-01 16 70287683 70287683 C A AARS Missense_Mutation p.Q847H 0.04 tolerated(0.16) possibly_damaging(0.627) TCGA-IB-7651-01 16 70350031 70350031 C T DDX19B Intron 0.18 TCGA-IB-7651-01 16 70406041 70406041 A G DDX19A 3'UTR 0.22 TCGA-IB-7651-01 16 70501802 70501802 A G FUK Missense_Mutation p.D199G 0.22 deleterious(0.01) probably_damaging(0.911) TCGA-IB-7651-01 16 70534950 70534950 C T COG4 Missense_Mutation p.R369H 0.17 deleterious(0.04) probably_damaging(1) TCGA-IB-7651-01 16 70557354 70557354 T G COG4 Missense_Mutation p.E31D 0.21 tolerated_low_confidence(0.47) benign(0.002) TCGA-IB-7651-01 16 705640 705640 C A WDR90 Missense_Mutation p.R596S 0.09 deleterious(0.03) benign(0.14) TCGA-IB-7651-01 16 70589013 70589013 C T SF3B3 Silent p.T538T 0.16 TCGA-IB-7651-01 16 70589061 70589061 G A SF3B3 Silent p.V554V 0.20 TCGA-IB-7651-01 16 70589068 70589068 G A SF3B3 Missense_Mutation p.A557T 0.15 deleterious(0.03) possibly_damaging(0.573) TCGA-IB-7651-01 16 70603981 70603981 G T SF3B3 Missense_Mutation p.G1113C 0.10 deleterious(0.01) probably_damaging(0.994) TCGA-IB-7651-01 16 70605707 70605707 C T SF3B3 Silent p.Y1215Y 0.18 TCGA-IB-7651-01 16 70698336 70698336 G T MTSS1L Nonsense_Mutation p.C496* 0.19 TCGA-IB-7651-01 16 70714875 70714875 G A MTSS1L Silent p.S41S 0.24 TCGA-IB-7651-01 16 70778369 70778369 G T VAC14 Silent p.L495L 0.18 TCGA-IB-7651-01 16 70815788 70815788 G A VAC14 Silent p.Y310Y 0.10 TCGA-IB-7651-01 16 70818699 70818699 G A VAC14 Missense_Mutation p.L156F 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 708580 708580 G A WDR90 Missense_Mutation p.R941H 0.23 tolerated(0.07) benign(0) TCGA-IB-7651-01 16 708595 708595 C A WDR90 Missense_Mutation p.A946D 0.23 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 16 70889034 70889034 G A HYDIN Missense_Mutation p.S4147F 0.17 probably_damaging(0.919) TCGA-IB-7651-01 16 70954552 70954552 A G HYDIN Missense_Mutation p.F2576S 0.16 possibly_damaging(0.82) TCGA-IB-7651-01 16 71065714 71065714 A T HYDIN Missense_Mutation p.F879Y 0.18 possibly_damaging(0.8) TCGA-IB-7651-01 16 71318457 71318457 T G CMTR2 Missense_Mutation p.K456T 0.18 tolerated(0.22) benign(0.014) TCGA-IB-7651-01 16 71319453 71319453 C A CMTR2 Missense_Mutation p.S124I 0.21 deleterious(0) possibly_damaging(0.694) TCGA-IB-7651-01 16 71423821 71423821 C A CALB2 3'UTR 0.14 TCGA-IB-7651-01 16 71488016 71488016 C T ZNF23 5'UTR 0.19 TCGA-IB-7651-01 16 71510112 71510112 C A ZNF19 Missense_Mutation p.G113V 0.14 tolerated(0.44) benign(0) TCGA-IB-7651-01 16 71515996 71515996 C A ZNF19 Missense_Mutation p.A8S 0.21 tolerated(0.12) benign(0.014) TCGA-IB-7651-01 16 71674597 71674597 C T MARVELD3 Silent p.L300L 0.06 TCGA-IB-7651-01 16 71683709 71683709 C T PHLPP2 Missense_Mutation p.S1019N 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 16 71686695 71686695 C T PHLPP2 Missense_Mutation p.E939K 0.12 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 16 71692594 71692594 T C PHLPP2 Missense_Mutation p.S704G 0.20 tolerated(0.16) benign(0.063) TCGA-IB-7651-01 16 71713307 71713307 A G PHLPP2 Missense_Mutation p.I341T 0.19 deleterious(0.01) benign(0.36) TCGA-IB-7651-01 16 718508 718508 G T RHOT2 Missense_Mutation p.E39D 0.20 deleterious(0.01) benign(0.151) TCGA-IB-7651-01 16 71893855 71893855 C A ZNF821 3'UTR 0.17 TCGA-IB-7651-01 16 71950546 71950546 G T IST1 Splice_Site p.X103_splice 0.19 TCGA-IB-7651-01 16 720170 720170 G A RHOT2 Silent p.G108G 0.17 TCGA-IB-7651-01 16 72055168 72055168 G A DHODH Silent p.R221R 0.11 TCGA-IB-7651-01 16 72110289 72110289 C T HPR Missense_Mutation p.A119V 0.21 tolerated(0.13) possibly_damaging(0.525) TCGA-IB-7651-01 16 72138495 72138495 T C DHX38 Silent p.R707R 0.20 TCGA-IB-7651-01 16 72141387 72141387 G A DHX38 Missense_Mutation p.E917K 0.16 deleterious(0.04) benign(0.23) TCGA-IB-7651-01 16 72153277 72153277 G T PMFBP1 Intron 0.16 TCGA-IB-7651-01 16 721923 721923 C T RHOT2 Missense_Mutation p.P340S 0.17 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 16 721946 721946 C T RHOT2 Silent p.R347R 0.18 TCGA-IB-7651-01 16 72821372 72821372 C T ZFHX3 Silent p.S3601S 0.17 TCGA-IB-7651-01 16 72821392 72821392 C T ZFHX3 Missense_Mutation p.D3595N 0.28 unknown(0) TCGA-IB-7651-01 16 72821414 72821414 C T ZFHX3 Silent p.S3587S 0.04 TCGA-IB-7651-01 16 72822080 72822080 C T ZFHX3 Silent p.Q3365Q 0.17 TCGA-IB-7651-01 16 72822708 72822708 C T ZFHX3 Missense_Mutation p.S3156N 0.16 unknown(0) TCGA-IB-7651-01 16 72828120 72828120 C A ZFHX3 Missense_Mutation p.V2821F 0.06 unknown(0) TCGA-IB-7651-01 16 72829708 72829708 C A ZFHX3 Missense_Mutation p.Q2291H 0.16 probably_damaging(0.994) TCGA-IB-7651-01 16 72830247 72830247 C A ZFHX3 Missense_Mutation p.A2112S 0.20 benign(0.443) TCGA-IB-7651-01 16 72831208 72831208 C A ZFHX3 Missense_Mutation p.Q1791H 0.14 probably_damaging(0.923) TCGA-IB-7651-01 16 72992964 72992964 C T ZFHX3 Missense_Mutation p.G361R 0.25 probably_damaging(0.996) TCGA-IB-7651-01 16 734755 734755 G A WDR24 Silent p.G784G 0.18 TCGA-IB-7651-01 16 737061 737061 T A WDR24 Missense_Mutation p.N339Y 0.19 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 16 737187 737187 G A WDR24 Nonsense_Mutation p.R297* 0.17 TCGA-IB-7651-01 16 7382863 7382863 G T RBFOX1 5'UTR 0.17 TCGA-IB-7651-01 16 739280 739280 G A WDR24 Missense_Mutation p.R121C 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 16 74384519 74384519 C T RP11-252A24.2 RNA 0.14 TCGA-IB-7651-01 16 74425384 74425384 G A NPIPB15 Silent p.Q246Q 0.16 TCGA-IB-7651-01 16 74524940 74524940 G A GLG1 Nonsense_Mutation p.R470* 0.19 TCGA-IB-7651-01 16 74678318 74678318 C T RFWD3 Missense_Mutation p.V341I 0.24 tolerated(0.19) benign(0.362) TCGA-IB-7651-01 16 74709292 74709292 C T MLKL Missense_Mutation p.V401I 0.24 tolerated(0.09) benign(0.355) TCGA-IB-7651-01 16 75138699 75138699 G T ZNRF1 Missense_Mutation p.D180Y 0.16 deleterious(0) possibly_damaging(0.707) TCGA-IB-7651-01 16 75263526 75263526 G A BCAR1 Silent p.A878A 0.10 TCGA-IB-7651-01 16 75267776 75267776 G A BCAR1 Missense_Mutation p.R736W 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 16 75276721 75276721 G A BCAR1 Missense_Mutation p.P140S 0.19 tolerated(0.67) benign(0.043) TCGA-IB-7651-01 16 75498407 75498407 C A TMEM170A Missense_Mutation p.G31V 0.25 tolerated(0.09) benign(0.006) TCGA-IB-7651-01 16 75513648 75513648 A T CHST6 Missense_Mutation p.S27T 0.26 tolerated(0.39) probably_damaging(0.952) TCGA-IB-7651-01 16 75563625 75563625 C T CHST5 Missense_Mutation p.V220M 0.17 deleterious(0.02) probably_damaging(0.986) TCGA-IB-7651-01 16 75600792 75600792 C T GABARAPL2 Missense_Mutation p.P26L 0.22 deleterious(0.01) benign(0.186) TCGA-IB-7651-01 16 75642133 75642133 G A ADAT1 Silent p.S426S 0.18 TCGA-IB-7651-01 16 75663366 75663366 T C KARS Missense_Mutation p.T528A 0.08 deleterious(0) probably_damaging(0.956) TCGA-IB-7651-01 16 75690139 75690139 T C TERF2IP Missense_Mutation p.I277T 0.16 deleterious(0.01) benign(0.205) TCGA-IB-7651-01 16 7629903 7629903 A G RBFOX1 Missense_Mutation p.D152G 0.18 deleterious(0) probably_damaging(0.972) TCGA-IB-7651-01 16 76389355 76389355 T G CNTNAP4 Missense_Mutation p.F88V 0.06 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 76483753 76483753 A T CNTNAP4 Intron 0.10 TCGA-IB-7651-01 16 76569448 76569448 C T CNTNAP4 Missense_Mutation p.T848M 0.14 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 16 76592577 76592577 C T CNTNAP4 Silent p.F1235F 0.18 TCGA-IB-7651-01 16 7703845 7703845 C A RBFOX1 Silent p.T282T 0.21 TCGA-IB-7651-01 16 77228783 77228783 C T MON1B Silent p.L343L 0.16 TCGA-IB-7651-01 16 77228807 77228807 C A MON1B Missense_Mutation p.L351M 0.26 deleterious(0.04) probably_damaging(0.972) TCGA-IB-7651-01 16 77323306 77323306 G A ADAMTS18 Silent p.C1135C 0.25 TCGA-IB-7651-01 16 77389909 77389909 G A ADAMTS18 Missense_Mutation p.P463L 0.29 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 77398216 77398216 G A ADAMTS18 Nonsense_Mutation p.R281* 0.27 TCGA-IB-7651-01 16 77401620 77401620 A C ADAMTS18 Missense_Mutation p.S166A 0.23 tolerated(0.09) benign(0.072) TCGA-IB-7651-01 16 775563 775563 G A CCDC78 Silent p.S95S 0.19 TCGA-IB-7651-01 16 78149014 78149014 C T WWOX Silent p.G124G 0.24 TCGA-IB-7651-01 16 784812 784812 G A NARFL Nonsense_Mutation p.R167* 0.21 TCGA-IB-7651-01 16 79633021 79633021 C T MAF Missense_Mutation p.R260H 0.26 deleterious(0.02) probably_damaging(0.988) TCGA-IB-7651-01 16 79633438 79633438 C T MAF Missense_Mutation p.S121N 0.20 tolerated(0.17) unknown(0) TCGA-IB-7651-01 16 79633606 79633606 C T MAF Missense_Mutation p.S65N 0.16 tolerated(0.1) unknown(0) TCGA-IB-7651-01 16 80574951 80574951 C T DYNLRB2 5'UTR 0.23 TCGA-IB-7651-01 16 80584508 80584508 C A DYNLRB2 3'UTR 0.20 TCGA-IB-7651-01 16 80718665 80718665 T C CDYL2 Missense_Mutation p.D129G 0.19 tolerated(0.39) possibly_damaging(0.787) TCGA-IB-7651-01 16 80718807 80718807 G A CDYL2 Nonsense_Mutation p.R82* 0.18 TCGA-IB-7651-01 16 81077122 81077122 C A ATMIN Missense_Mutation p.A340D 0.25 deleterious(0) possibly_damaging(0.821) TCGA-IB-7651-01 16 81078026 81078026 C A ATMIN Missense_Mutation p.F641L 0.16 tolerated(0.09) benign(0.101) TCGA-IB-7651-01 16 81097352 81097352 G A C16orf46 Missense_Mutation p.A70V 0.25 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 16 81164153 81164153 G A PKD1L2 RNA 0.14 TCGA-IB-7651-01 16 81181859 81181859 A C PKD1L2 RNA 0.17 TCGA-IB-7651-01 16 81183400 81183400 C T PKD1L2 RNA 0.22 TCGA-IB-7651-01 16 81198334 81198334 T G PKD1L2 RNA 0.26 TCGA-IB-7651-01 16 81248637 81248637 G A PKD1L2 Missense_Mutation p.A209V 0.14 tolerated(1) benign(0.01) TCGA-IB-7651-01 16 81298250 81298250 T G BCMO1 Missense_Mutation p.D159E 0.26 deleterious(0) possibly_damaging(0.803) TCGA-IB-7651-01 16 81385228 81385228 A G GAN Missense_Mutation p.T70A 0.26 tolerated(0.5) benign(0) TCGA-IB-7651-01 16 81391435 81391435 C T GAN Missense_Mutation p.A291V 0.16 tolerated(0.95) benign(0.001) TCGA-IB-7651-01 16 81399055 81399055 T C GAN Missense_Mutation p.S492P 0.23 deleterious(0.01) possibly_damaging(0.806) TCGA-IB-7651-01 16 814919 814919 C T MSLN Silent p.F131F 0.21 TCGA-IB-7651-01 16 81685954 81685954 G A CMIP Silent p.S208S 0.30 TCGA-IB-7651-01 16 81703810 81703810 C T CMIP Missense_Mutation p.L297F 0.16 tolerated(0.18) probably_damaging(0.942) TCGA-IB-7651-01 16 81739151 81739151 C T CMIP Silent p.L713L 0.22 TCGA-IB-7651-01 16 81939093 81939093 T C PLCG2 Missense_Mutation p.M483T 0.30 deleterious(0) benign(0.4) TCGA-IB-7651-01 16 81942147 81942147 C A PLCG2 Missense_Mutation p.L562M 0.20 tolerated(0.06) possibly_damaging(0.896) TCGA-IB-7651-01 16 819456 819456 C T MSLNL Missense_Mutation p.R1045H 0.21 benign(0.001) TCGA-IB-7651-01 16 81972512 81972512 C T PLCG2 Missense_Mutation p.T1102M 0.17 tolerated(0.1) benign(0.243) TCGA-IB-7651-01 16 81979814 81979814 C T PLCG2 Silent p.S1172S 0.25 TCGA-IB-7651-01 16 82069166 82069166 C T HSD17B2 Missense_Mutation p.A46V 0.08 tolerated(0.22) benign(0.003) TCGA-IB-7651-01 16 82131894 82131894 G A HSD17B2 Silent p.T339T 0.17 TCGA-IB-7651-01 16 82132048 82132048 G T HSD17B2 3'UTR 0.16 TCGA-IB-7651-01 16 836178 836178 G A RPUSD1 Silent p.C237C 0.04 TCGA-IB-7651-01 16 83704532 83704532 C T CDH13 Silent p.I460I 0.08 TCGA-IB-7651-01 16 839554 839554 G T CHTF18 Nonsense_Mutation p.E149* 0.17 TCGA-IB-7651-01 16 83994650 83994650 T G OSGIN1 Missense_Mutation p.V154G 0.17 deleterious(0.03) benign(0.037) TCGA-IB-7651-01 16 83999313 83999313 G A OSGIN1 Missense_Mutation p.D379N 0.20 tolerated(0.35) possibly_damaging(0.743) TCGA-IB-7651-01 16 84050168 84050168 C T SLC38A8 Missense_Mutation p.S373N 0.15 deleterious(0.03) benign(0.052) TCGA-IB-7651-01 16 84056428 84056428 C T SLC38A8 Missense_Mutation p.V253M 0.09 deleterious(0.04) probably_damaging(0.982) TCGA-IB-7651-01 16 84056473 84056473 T C SLC38A8 Missense_Mutation p.I238V 0.10 tolerated(0.56) benign(0.116) TCGA-IB-7651-01 16 84104310 84104310 T C MBTPS1 Silent p.L555L 0.25 TCGA-IB-7651-01 16 84115363 84115363 C T MBTPS1 Silent p.K479K 0.16 TCGA-IB-7651-01 16 84132819 84132819 A C MBTPS1 Missense_Mutation p.I87S 0.17 deleterious(0.04) possibly_damaging(0.461) TCGA-IB-7651-01 16 84183927 84183927 C T DNAAF1 Missense_Mutation p.T111M 0.04 deleterious(0.01) probably_damaging(0.962) TCGA-IB-7651-01 16 841944 841944 G A CHTF18 Missense_Mutation p.A400T 0.11 deleterious(0) probably_damaging(0.97) TCGA-IB-7651-01 16 84199527 84199527 G A DNAAF1 Silent p.R334R 0.22 TCGA-IB-7651-01 16 84212529 84212529 G A TAF1C 3'UTR 0.14 TCGA-IB-7651-01 16 84213008 84213008 G T TAF1C Missense_Mutation p.L717I 0.07 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 16 84215021 84215021 G T TAF1C Silent p.S385S 0.17 TCGA-IB-7651-01 16 84224787 84224787 C T ADAD2 5'UTR 0.06 TCGA-IB-7651-01 16 84256170 84256170 T C KCNG4 Missense_Mutation p.I405V 0.08 tolerated(0.2) probably_damaging(0.991) TCGA-IB-7651-01 16 84270731 84270731 C T KCNG4 Missense_Mutation p.G121R 0.12 tolerated(1) probably_damaging(0.919) TCGA-IB-7651-01 16 84353101 84353101 C T WFDC1 Silent p.C162C 0.28 TCGA-IB-7651-01 16 84353108 84353108 C T WFDC1 Silent p.L165L 0.12 TCGA-IB-7651-01 16 84442094 84442094 C T ATP2C2 Silent p.I137I 0.25 TCGA-IB-7651-01 16 84459343 84459343 C T ATP2C2 Missense_Mutation p.L308F 0.22 tolerated(0.14) possibly_damaging(0.76) TCGA-IB-7651-01 16 84485577 84485577 C A ATP2C2 Missense_Mutation p.L571I 0.08 tolerated(0.09) possibly_damaging(0.808) TCGA-IB-7651-01 16 84513633 84513633 C A TLDC1 Splice_Site p.X420_splice 0.24 TCGA-IB-7651-01 16 84522931 84522931 C T TLDC1 Missense_Mutation p.R161Q 0.28 tolerated(0.16) possibly_damaging(0.449) TCGA-IB-7651-01 16 84690700 84690700 G A KLHL36 Missense_Mutation p.G96E 0.25 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 84691069 84691069 C T KLHL36 Missense_Mutation p.T219M 0.31 tolerated(0.11) probably_damaging(0.976) TCGA-IB-7651-01 16 84691332 84691332 C T KLHL36 Missense_Mutation p.R307W 0.25 deleterious(0.03) possibly_damaging(0.777) TCGA-IB-7651-01 16 84695391 84695391 C T KLHL36 Silent p.S501S 0.27 TCGA-IB-7651-01 16 85024017 85024017 G T ZDHHC7 Missense_Mutation p.L70M 0.16 deleterious(0.03) probably_damaging(1) TCGA-IB-7651-01 16 85689364 85689364 G T GSE1 Missense_Mutation p.R277M 0.12 deleterious(0) unknown(0) TCGA-IB-7651-01 16 85690962 85690962 G A GSE1 Silent p.T464T 0.17 TCGA-IB-7651-01 16 85691142 85691142 G A GSE1 Silent p.E524E 0.24 TCGA-IB-7651-01 16 85696964 85696964 G A GSE1 Silent p.L796L 0.16 TCGA-IB-7651-01 16 85699592 85699592 G A GSE1 Silent p.T923T 0.24 TCGA-IB-7651-01 16 85701835 85701835 G A GSE1 Missense_Mutation p.A1074T 0.15 tolerated(0.58) benign(0.029) TCGA-IB-7651-01 16 85711654 85711654 A G GINS2 3'UTR 0.14 TCGA-IB-7651-01 16 85840183 85840183 T G COX4I1 Intron 0.24 TCGA-IB-7651-01 16 85952190 85952190 G A IRF8 Missense_Mutation p.A257T 0.25 tolerated(0.43) benign(0.003) TCGA-IB-7651-01 16 85954818 85954818 G A IRF8 Missense_Mutation p.R404Q 0.26 deleterious(0.01) probably_damaging(0.99) TCGA-IB-7651-01 16 86544232 86544232 C T FOXF1 Silent p.G19G 0.32 TCGA-IB-7651-01 16 86545078 86545078 C T FOXF1 Silent p.S301S 0.24 TCGA-IB-7651-01 16 86601141 86601141 C A FOXC2 Missense_Mutation p.P67H 0.28 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 16 86601231 86601231 G A FOXC2 Missense_Mutation p.G97D 0.05 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 86612289 86612289 C T FOXL1 5'UTR 0.24 TCGA-IB-7651-01 16 87364932 87364932 C T FBXO31 Missense_Mutation p.D528N 0.16 tolerated(0.31) benign(0.322) TCGA-IB-7651-01 16 87377229 87377229 T G FBXO31 Missense_Mutation p.K211T 0.17 tolerated(0.22) benign(0.379) TCGA-IB-7651-01 16 87445750 87445750 C T ZCCHC14 Silent p.T722T 0.18 TCGA-IB-7651-01 16 87448966 87448966 C A ZCCHC14 Missense_Mutation p.S327I 0.17 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 16 87677922 87677922 C T JPH3 Silent p.S147S 0.27 TCGA-IB-7651-01 16 87678325 87678325 G A JPH3 Missense_Mutation p.A282T 0.29 deleterious(0) probably_damaging(0.946) TCGA-IB-7651-01 16 87678515 87678515 G A JPH3 Missense_Mutation p.G345D 0.21 deleterious(0.02) benign(0.017) TCGA-IB-7651-01 16 87744864 87744864 G A KLHDC4 Missense_Mutation p.R341C 0.14 deleterious(0.02) probably_damaging(0.99) TCGA-IB-7651-01 16 87764186 87764186 G T KLHDC4 Missense_Mutation p.L191M 0.22 deleterious(0) possibly_damaging(0.507) TCGA-IB-7651-01 16 87764215 87764215 C T KLHDC4 Missense_Mutation p.R181Q 0.05 deleterious(0) possibly_damaging(0.899) TCGA-IB-7651-01 16 87866441 87866441 G A SLC7A5 3'UTR 0.26 TCGA-IB-7651-01 16 87868172 87868172 A C SLC7A5 Missense_Mutation p.F439C 0.26 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 87874675 87874675 G T SLC7A5 Missense_Mutation p.L251I 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 16 88039849 88039849 G T BANP Silent p.T203T 0.26 TCGA-IB-7651-01 16 8829607 8829607 T G ABAT Missense_Mutation p.M4R 0.20 tolerated_low_confidence(0.29) benign(0.001) TCGA-IB-7651-01 16 88600853 88600853 C T ZFPM1 Silent p.L829L 0.11 TCGA-IB-7651-01 16 88601210 88601210 G A ZFPM1 Silent p.A948A 0.08 TCGA-IB-7651-01 16 88643732 88643732 C T ZC3H18 Silent p.S67S 0.24 TCGA-IB-7651-01 16 88677771 88677771 C T ZC3H18 Silent p.R434R 0.31 TCGA-IB-7651-01 16 88677775 88677775 C T ZC3H18 Nonsense_Mutation p.R436* 0.29 TCGA-IB-7651-01 16 88688650 88688650 G A ZC3H18 Silent p.P507P 0.27 TCGA-IB-7651-01 16 88690390 88690390 G A ZC3H18 Silent p.P606P 0.19 TCGA-IB-7651-01 16 88691101 88691101 G T ZC3H18 Missense_Mutation p.D664Y 0.28 deleterious_low_confidence(0) unknown(0) TCGA-IB-7651-01 16 88706264 88706264 C T IL17C Silent p.F126F 0.30 TCGA-IB-7651-01 16 88721747 88721747 C T MVD Missense_Mutation p.A253T 0.10 deleterious(0.03) possibly_damaging(0.823) TCGA-IB-7651-01 16 88744989 88744989 C T SNAI3 Missense_Mutation p.R249H 0.13 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 16 88747821 88747821 C T SNAI3 Silent p.P126P 0.06 TCGA-IB-7651-01 16 88779151 88779151 G A CTU2 Missense_Mutation p.G192D 0.17 tolerated(0.28) benign(0.008) TCGA-IB-7651-01 16 88872999 88872999 G A CDT1 Missense_Mutation p.A347T 0.21 deleterious(0.01) benign(0.009) TCGA-IB-7651-01 16 88925046 88925046 G A TRAPPC2L Missense_Mutation p.R18H 0.26 tolerated(0.07) benign(0.082) TCGA-IB-7651-01 16 88951484 88951484 G A CBFA2T3 Missense_Mutation p.R363W 0.30 deleterious(0) possibly_damaging(0.677) TCGA-IB-7651-01 16 8900240 8900240 C T PMM2 Missense_Mutation p.A108V 0.18 deleterious(0.01) benign(0.431) TCGA-IB-7651-01 16 89167209 89167209 G A ACSF3 Silent p.S40S 0.20 TCGA-IB-7651-01 16 89167319 89167319 G A ACSF3 Missense_Mutation p.R77H 0.16 tolerated(0.21) benign(0.022) TCGA-IB-7651-01 16 89167347 89167347 C T ACSF3 Silent p.C86C 0.06 TCGA-IB-7651-01 16 89167414 89167414 G A ACSF3 Missense_Mutation p.V109I 0.21 deleterious(0.04) benign(0.365) TCGA-IB-7651-01 16 89256724 89256724 C A CDH15 Missense_Mutation p.A351D 0.30 deleterious(0.01) possibly_damaging(0.579) TCGA-IB-7651-01 16 89256843 89256843 G T CDH15 Missense_Mutation p.G391C 0.25 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 89341252 89341252 G A ANKRD11 Silent p.S2561S 0.25 TCGA-IB-7651-01 16 89345738 89345738 C T ANKRD11 Silent p.T2404T 0.11 TCGA-IB-7651-01 16 89346638 89346638 G A ANKRD11 Silent p.D2104D 0.27 TCGA-IB-7651-01 16 89346643 89346643 G T ANKRD11 Missense_Mutation p.L2103M 0.11 benign(0.406) TCGA-IB-7651-01 16 89347194 89347194 G A ANKRD11 Missense_Mutation p.A1919V 0.15 probably_damaging(0.997) TCGA-IB-7651-01 16 89347666 89347666 C T ANKRD11 Missense_Mutation p.D1762N 0.26 probably_damaging(0.973) TCGA-IB-7651-01 16 89348524 89348524 G A ANKRD11 Missense_Mutation p.H1476Y 0.20 benign(0.352) TCGA-IB-7651-01 16 89349137 89349137 C T ANKRD11 Silent p.S1271S 0.17 TCGA-IB-7651-01 16 89371699 89371699 G A ANKRD11 Silent p.G47G 0.27 TCGA-IB-7651-01 16 8953039 8953039 C T CARHSP1 Silent p.R49R 0.15 TCGA-IB-7651-01 16 89598955 89598955 C T SPG7 Missense_Mutation p.A412V 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 89619414 89619414 G A SPG7 Missense_Mutation p.A603T 0.22 deleterious(0.03) benign(0.365) TCGA-IB-7651-01 16 89712332 89712332 G A CHMP1A 3'UTR 0.15 TCGA-IB-7651-01 16 89712424 89712424 G A CHMP1A 3'UTR 0.27 TCGA-IB-7651-01 16 89735711 89735711 C T SPATA33 Nonsense_Mutation p.Q76* 0.20 TCGA-IB-7651-01 16 89735829 89735829 C T SPATA33 Missense_Mutation p.P115L 0.23 deleterious(0.04) benign(0.08) TCGA-IB-7651-01 16 89753204 89753204 G T CDK10 Missense_Mutation p.R29M 0.11 tolerated(0.25) benign(0.007) TCGA-IB-7651-01 16 89758865 89758865 C T CDK10 Silent p.C142C 0.23 TCGA-IB-7651-01 16 89759861 89759861 G T CDK10 Missense_Mutation p.K198N 0.30 tolerated(0.52) benign(0.013) TCGA-IB-7651-01 16 89764195 89764195 C T SPATA2L Silent p.G274G 0.20 TCGA-IB-7651-01 16 89764461 89764461 G A SPATA2L Missense_Mutation p.R186W 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 89774857 89774857 G T VPS9D1 Missense_Mutation p.L594M 0.26 tolerated(0.11) probably_damaging(0.937) TCGA-IB-7651-01 16 89775730 89775730 G A VPS9D1 Missense_Mutation p.A501V 0.26 tolerated(0.18) benign(0.003) TCGA-IB-7651-01 16 89807275 89807275 C T FANCA Splice_Site p.X1256_splice 0.11 TCGA-IB-7651-01 16 89815125 89815125 G A FANCA Missense_Mutation p.A1097V 0.22 tolerated(0.1) possibly_damaging(0.483) TCGA-IB-7651-01 16 8993578 8993578 G A USP7 Silent p.T782T 0.22 TCGA-IB-7651-01 16 8995939 8995939 G A USP7 Missense_Mutation p.H683Y 0.05 tolerated(0.18) benign(0.018) TCGA-IB-7651-01 16 89971399 89971399 T C TCF25 Missense_Mutation p.F508S 0.19 tolerated(0.54) benign(0.01) TCGA-IB-7651-01 16 89977554 89977554 C A TCF25 Missense_Mutation p.L647M 0.31 tolerated(0.12) benign(0.017) TCGA-IB-7651-01 16 89977587 89977587 C T TCF25 Missense_Mutation p.L658F 0.13 tolerated(1) benign(0.001) TCGA-IB-7651-01 16 89999002 89999002 G A TUBB3 Silent p.E27E 0.21 TCGA-IB-7651-01 16 90001610 90001610 C T TUBB3 Missense_Mutation p.R251C 0.26 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-IB-7651-01 16 90025581 90025581 C T DEF8 Intron 0.19 TCGA-IB-7651-01 16 90027341 90027341 T C DEF8 Missense_Mutation p.C234R 0.25 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 16 90097793 90097793 C A GAS8 Silent p.I59I 0.06 TCGA-IB-7651-01 16 90102049 90102049 C T GAS8 Silent p.T168T 0.17 TCGA-IB-7651-01 16 90109727 90109727 G A GAS8 Missense_Mutation p.A471T 0.28 deleterious(0.01) benign(0.327) TCGA-IB-7651-01 16 90124345 90124345 G T PRDM7 3'UTR 0.30 TCGA-IB-7651-01 16 90124551 90124551 T C PRDM7 3'UTR 0.10 TCGA-IB-7651-01 16 90160955 90160955 G A TUBB8P7 Intron 0.07 TCGA-IB-7651-01 16 9196949 9196949 G A C16orf72 Missense_Mutation p.R139H 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 16 9857412 9857412 C T GRIN2A Missense_Mutation p.S1330N 0.20 tolerated(0.48) benign(0.01) TCGA-IB-7651-01 16 9857650 9857650 C T GRIN2A Missense_Mutation p.D1251N 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 16 9858386 9858386 T G GRIN2A Missense_Mutation p.K1005N 0.22 tolerated(0.46) possibly_damaging(0.524) TCGA-IB-7651-01 16 9862923 9862923 G T GRIN2A Missense_Mutation p.L794M 0.16 deleterious(0.02) possibly_damaging(0.807) TCGA-IB-7651-01 17 10212991 10212991 G A MYH13 Silent p.L1605L 0.21 TCGA-IB-7651-01 17 10227477 10227477 C A MYH13 Missense_Mutation p.E932D 0.18 tolerated(1) benign(0.001) TCGA-IB-7651-01 17 10265484 10265484 C T MYH13 Silent p.P152P 0.07 TCGA-IB-7651-01 17 10293915 10293915 T A MYH8 Missense_Mutation p.E1890D 0.16 deleterious(0.01) possibly_damaging(0.863) TCGA-IB-7651-01 17 10299984 10299984 C T MYH8 Missense_Mutation p.A1472T 0.15 tolerated(0.08) possibly_damaging(0.582) TCGA-IB-7651-01 17 10304205 10304205 T A MYH8 Missense_Mutation p.K1109M 0.06 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 10318882 10318882 G A MYH8 Silent p.A185A 0.20 TCGA-IB-7651-01 17 10323446 10323446 C T MYH8 Silent p.P33P 0.21 TCGA-IB-7651-01 17 10323550 10323550 C T MYH8 5'UTR 0.18 TCGA-IB-7651-01 17 10346788 10346788 C A MYH4 Missense_Mutation p.E1908D 0.18 tolerated(0.73) benign(0.19) TCGA-IB-7651-01 17 10348418 10348418 C T MYH4 Missense_Mutation p.A1781T 0.10 deleterious(0.03) probably_damaging(1) TCGA-IB-7651-01 17 10360803 10360803 G A MYH4 Silent p.L611L 0.21 TCGA-IB-7651-01 17 10397923 10397923 C T MYH1 Missense_Mutation p.R1845H 0.15 tolerated(0.08) probably_damaging(0.971) TCGA-IB-7651-01 17 10399596 10399596 C T MYH1 Missense_Mutation p.A1643T 0.17 tolerated(0.22) benign(0.026) TCGA-IB-7651-01 17 10409416 10409416 C T MYH1 Missense_Mutation p.E657K 0.18 deleterious(0.02) possibly_damaging(0.742) TCGA-IB-7651-01 17 10415238 10415238 C T MYH1 Missense_Mutation p.R445H 0.20 deleterious(0.01) probably_damaging(0.973) TCGA-IB-7651-01 17 10433218 10433218 C T MYH2 Silent p.K957K 0.16 TCGA-IB-7651-01 17 10438497 10438497 C A MYH2 Missense_Mutation p.E691D 0.19 tolerated(1) benign(0) TCGA-IB-7651-01 17 10446206 10446206 T G MYH2 Missense_Mutation p.K297T 0.19 deleterious(0) probably_damaging(0.913) TCGA-IB-7651-01 17 10532983 10532983 T C MYH3 Silent p.E1909E 0.11 TCGA-IB-7651-01 17 10545853 10545853 C A MYH3 Missense_Mutation p.S590I 0.18 deleterious(0.01) benign(0.13) TCGA-IB-7651-01 17 10595270 10595270 T C SCO1 Missense_Mutation p.T192A 0.17 tolerated(0.13) benign(0.035) TCGA-IB-7651-01 17 11532779 11532779 G T DNAH9 Nonsense_Mutation p.E466* 0.14 TCGA-IB-7651-01 17 11532855 11532855 G T DNAH9 Missense_Mutation p.R491M 0.11 benign(0.065) TCGA-IB-7651-01 17 11535968 11535968 C T DNAH9 Missense_Mutation p.T528I 0.15 possibly_damaging(0.836) TCGA-IB-7651-01 17 11556085 11556085 C T DNAH9 Silent p.C787C 0.16 TCGA-IB-7651-01 17 11645572 11645572 C T DNAH9 Missense_Mutation p.S2018L 0.17 benign(0.001) TCGA-IB-7651-01 17 11650903 11650903 C T DNAH9 Missense_Mutation p.R2144W 0.17 probably_damaging(0.999) TCGA-IB-7651-01 17 11684429 11684429 G T DNAH9 Silent p.V2552V 0.14 TCGA-IB-7651-01 17 11687764 11687764 G A DNAH9 Missense_Mutation p.A2657T 0.16 benign(0.013) TCGA-IB-7651-01 17 11696901 11696901 T C DNAH9 Missense_Mutation p.Y2715H 0.18 probably_damaging(0.973) TCGA-IB-7651-01 17 11711199 11711199 C A DNAH9 Silent p.I2857I 0.21 TCGA-IB-7651-01 17 11757669 11757669 G A DNAH9 Missense_Mutation p.R3286H 0.20 probably_damaging(0.993) TCGA-IB-7651-01 17 11845625 11845625 G A DNAH9 Silent p.K4222K 0.16 TCGA-IB-7651-01 17 11865483 11865483 G A DNAH9 Silent p.T4381T 0.08 TCGA-IB-7651-01 17 11896000 11896000 G T ZNF18 Nonsense_Mutation p.Y49* 0.17 TCGA-IB-7651-01 17 11984701 11984701 T G MAP2K4 Missense_Mutation p.S83A 0.22 tolerated(0.16) possibly_damaging(0.459) TCGA-IB-7651-01 17 1248733 1248733 C A YWHAE 3'UTR 0.15 TCGA-IB-7651-01 17 1264567 1264567 C T YWHAE Missense_Mutation p.A133T 0.18 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-IB-7651-01 17 12903496 12903496 G A ELAC2 Missense_Mutation p.A467V 0.13 tolerated(1) benign(0.001) TCGA-IB-7651-01 17 12903547 12903547 G A ELAC2 Missense_Mutation p.A450V 0.18 tolerated(0.13) probably_damaging(0.963) TCGA-IB-7651-01 17 12909125 12909125 G T ELAC2 Missense_Mutation p.A272D 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.899) TCGA-IB-7651-01 17 13399926 13399926 G A HS3ST3A1 Missense_Mutation p.T270M 0.09 deleterious(0.01) possibly_damaging(0.476) TCGA-IB-7651-01 17 13399951 13399951 C T HS3ST3A1 Missense_Mutation p.D262N 0.12 tolerated(0.06) benign(0.068) TCGA-IB-7651-01 17 1340290 1340290 G A CRK Missense_Mutation p.A134V 0.22 tolerated(0.72) benign(0.001) TCGA-IB-7651-01 17 1381256 1381256 C T MYO1C Missense_Mutation p.V471I 0.20 tolerated(0.45) possibly_damaging(0.588) TCGA-IB-7651-01 17 1381754 1381754 C T MYO1C Silent p.T415T 0.15 TCGA-IB-7651-01 17 1438814 1438814 T C PITPNA Splice_Site p.X153_splice 0.17 TCGA-IB-7651-01 17 1479048 1479048 C T SLC43A2 Silent p.G520G 0.24 TCGA-IB-7651-01 17 1494748 1494748 C T SLC43A2 Missense_Mutation p.S249N 0.16 tolerated(0.15) benign(0.02) TCGA-IB-7651-01 17 15212016 15212016 C T TEKT3 Silent p.P407P 0.18 TCGA-IB-7651-01 17 15234932 15234932 C T TEKT3 Splice_Site 0.20 TCGA-IB-7651-01 17 15341153 15341153 G T CDRT4 Missense_Mutation p.N131K 0.21 tolerated(0.19) possibly_damaging(0.859) TCGA-IB-7651-01 17 15341418 15341418 A G CDRT4 Missense_Mutation p.I43T 0.17 tolerated(0.06) possibly_damaging(0.702) TCGA-IB-7651-01 17 1538795 1538795 G A SCARF1 Missense_Mutation p.R584W 0.09 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 17 15522551 15522551 G A CDRT1 Silent p.I92I 0.16 TCGA-IB-7651-01 17 15532139 15532139 G A TRIM16 Silent p.L495L 0.06 TCGA-IB-7651-01 17 15620048 15620048 G A ZNF286A Missense_Mutation p.R337Q 0.05 tolerated(1) probably_damaging(0.994) TCGA-IB-7651-01 17 1563232 1563232 G A PRPF8 Nonsense_Mutation p.R1617* 0.18 TCGA-IB-7651-01 17 1585273 1585273 C T PRPF8 Missense_Mutation p.R165H 0.20 deleterious(0.01) probably_damaging(0.989) TCGA-IB-7651-01 17 15989754 15989754 G T NCOR1 Missense_Mutation p.L1007I 0.23 possibly_damaging(0.507) TCGA-IB-7651-01 17 15989758 15989758 T G NCOR1 Splice_Site p.X1006_splice 0.14 TCGA-IB-7651-01 17 16024477 16024477 G A NCOR1 Missense_Mutation p.R581C 0.17 possibly_damaging(0.726) TCGA-IB-7651-01 17 16049816 16049816 T C NCOR1 Missense_Mutation p.E319G 0.21 probably_damaging(0.995) TCGA-IB-7651-01 17 16075231 16075231 C A NCOR1 Missense_Mutation p.K107N 0.17 probably_damaging(0.996) TCGA-IB-7651-01 17 16120588 16120588 G A PIGL Nonsense_Mutation p.W16* 0.16 TCGA-IB-7651-01 17 16120611 16120611 C T PIGL Missense_Mutation p.S24F 0.21 tolerated(0.34) benign(0.023) TCGA-IB-7651-01 17 16216893 16216893 C T PIGL Silent p.G153G 0.13 TCGA-IB-7651-01 17 16321163 16321163 C T TRPV2 Nonsense_Mutation p.R61* 0.12 TCGA-IB-7651-01 17 16330160 16330160 C T TRPV2 Missense_Mutation p.A407V 0.18 tolerated(1) benign(0.002) TCGA-IB-7651-01 17 16335315 16335315 G A TRPV2 Missense_Mutation p.E564K 0.19 tolerated(0.69) benign(0.003) TCGA-IB-7651-01 17 16336966 16336966 G A TRPV2 Missense_Mutation p.V690I 0.17 tolerated(0.07) benign(0.081) TCGA-IB-7651-01 17 16340106 16340106 C T TRPV2 Missense_Mutation p.T733I 0.17 deleterious(0.02) benign(0.014) TCGA-IB-7651-01 17 16365615 16365615 T G FAM211A Missense_Mutation p.D111A 0.10 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 17 16455434 16455434 T C ZNF287 Silent p.K674K 0.25 TCGA-IB-7651-01 17 16456289 16456289 G A ZNF287 Silent p.T389T 0.19 TCGA-IB-7651-01 17 1652003 1652003 G A SERPINF2 Missense_Mutation p.R276H 0.06 tolerated(0.07) benign(0.017) TCGA-IB-7651-01 17 16537218 16537218 G A ZNF624 Missense_Mutation p.P112S 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-IB-7651-01 17 1657648 1657648 C T SERPINF2 Silent p.S432S 0.17 TCGA-IB-7651-01 17 16593733 16593733 G T CCDC144A Nonsense_Mutation p.E7* 0.19 TCGA-IB-7651-01 17 16594033 16594033 G A CCDC144A Missense_Mutation p.V107M 0.17 deleterious_low_confidence(0) benign(0.003) TCGA-IB-7651-01 17 16612399 16612399 G A CCDC144A Missense_Mutation p.G343D 0.16 tolerated(1) benign(0.074) TCGA-IB-7651-01 17 16676017 16676017 C T CCDC144A Silent p.I1415I 0.12 TCGA-IB-7651-01 17 16699492 16699492 A G CCDC144A 3'UTR 0.10 TCGA-IB-7651-01 17 16723972 16723972 C T AC022596.6 RNA 0.13 TCGA-IB-7651-01 17 16735579 16735579 C A KRT16P2 RNA 0.15 TCGA-IB-7651-01 17 16842840 16842840 C A TNFRSF13B 3'UTR 0.08 TCGA-IB-7651-01 17 16843683 16843683 C A TNFRSF13B Missense_Mutation p.Q196H 0.17 deleterious(0.01) probably_damaging(0.931) TCGA-IB-7651-01 17 1686706 1686706 G A SMYD4 Silent p.H695H 0.20 TCGA-IB-7651-01 17 17122372 17122372 C T FLCN Silent p.R341R 0.22 TCGA-IB-7651-01 17 17124912 17124912 G A FLCN Silent p.T270T 0.19 TCGA-IB-7651-01 17 17131402 17131402 C T FLCN Missense_Mutation p.R17H 0.19 deleterious(0.02) possibly_damaging(0.861) TCGA-IB-7651-01 17 17250251 17250251 G A NT5M Missense_Mutation p.R226Q 0.14 deleterious(0.02) probably_damaging(0.985) TCGA-IB-7651-01 17 17380439 17380439 G A MED9 Silent p.K28K 0.25 TCGA-IB-7651-01 17 17696546 17696546 C T RAI1 Missense_Mutation p.P95L 0.16 deleterious(0) benign(0.44) TCGA-IB-7651-01 17 17699003 17699003 G A RAI1 Nonsense_Mutation p.W914* 0.19 TCGA-IB-7651-01 17 17700276 17700276 G A RAI1 Silent p.S1338S 0.20 TCGA-IB-7651-01 17 17701060 17701060 C T RAI1 Missense_Mutation p.R1600W 0.16 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 17 17720902 17720902 C A SREBF1 Intron 0.10 TCGA-IB-7651-01 17 17764838 17764838 G A TOM1L2 Silent p.V410V 0.09 TCGA-IB-7651-01 17 1780550 1780550 C T RPA1 Missense_Mutation p.T211I 0.17 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 17 17907797 17907797 G A LRRC48 Missense_Mutation p.E374K 0.15 deleterious(0.01) possibly_damaging(0.573) TCGA-IB-7651-01 17 18002358 18002358 G A DRG2 Missense_Mutation p.D115N 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 18007126 18007126 A C DRG2 Missense_Mutation p.K273T 0.16 tolerated(0.28) benign(0.196) TCGA-IB-7651-01 17 18022454 18022454 C A MYO15A Missense_Mutation p.R114S 0.19 probably_damaging(0.956) TCGA-IB-7651-01 17 18024987 18024987 C T MYO15A Missense_Mutation p.P958L 0.15 unknown(0) TCGA-IB-7651-01 17 18025224 18025224 A G MYO15A Missense_Mutation p.D1037G 0.23 unknown(0) TCGA-IB-7651-01 17 18025324 18025324 G T MYO15A Missense_Mutation p.Q1070H 0.13 unknown(0) TCGA-IB-7651-01 17 18025661 18025661 G T MYO15A Missense_Mutation p.A1183S 0.16 unknown(0) TCGA-IB-7651-01 17 18029702 18029702 A C MYO15A Missense_Mutation p.Q1266H 0.14 unknown(0) TCGA-IB-7651-01 17 18030104 18030104 G T MYO15A Splice_Site p.X1289_splice 0.04 TCGA-IB-7651-01 17 18041528 18041528 C T MYO15A Missense_Mutation p.R1659W 0.18 unknown(0) TCGA-IB-7651-01 17 18044339 18044339 G T MYO15A Missense_Mutation p.G1805C 0.18 unknown(0) TCGA-IB-7651-01 17 18051507 18051507 A G MYO15A Missense_Mutation p.D2225G 0.14 unknown(0) TCGA-IB-7651-01 17 18054176 18054176 G A MYO15A Silent p.T2474T 0.11 TCGA-IB-7651-01 17 18054484 18054484 G A MYO15A Missense_Mutation p.V2512M 0.04 unknown(0) TCGA-IB-7651-01 17 18062626 18062626 G T MYO15A Missense_Mutation p.S3065I 0.16 unknown(0) TCGA-IB-7651-01 17 18065967 18065967 A G MYO15A Missense_Mutation p.S3196G 0.05 unknown(0) TCGA-IB-7651-01 17 18069767 18069767 C T MYO15A Missense_Mutation p.R3294W 0.16 unknown(0) TCGA-IB-7651-01 17 18075471 18075471 G A MYO15A Missense_Mutation p.G3406D 0.19 unknown(0) TCGA-IB-7651-01 17 18110257 18110257 G A ALKBH5 Missense_Mutation p.R327H 0.17 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-IB-7651-01 17 18133300 18133300 G A LLGL1 Missense_Mutation p.D43N 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 17 18135840 18135840 C T LLGL1 Silent p.L71L 0.15 TCGA-IB-7651-01 17 18138215 18138215 T C LLGL1 Missense_Mutation p.V323A 0.12 deleterious(0) possibly_damaging(0.734) TCGA-IB-7651-01 17 18141066 18141066 G A LLGL1 Missense_Mutation p.R628H 0.09 deleterious(0.01) benign(0.234) TCGA-IB-7651-01 17 18144854 18144854 G A LLGL1 Silent p.T864T 0.19 TCGA-IB-7651-01 17 18145222 18145222 G T LLGL1 Nonsense_Mutation p.E931* 0.17 TCGA-IB-7651-01 17 18149700 18149700 C T FLII Missense_Mutation p.G1043D 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 17 18150248 18150248 T C FLII Missense_Mutation p.D932G 0.10 deleterious(0) probably_damaging(0.977) TCGA-IB-7651-01 17 18166031 18166031 G T MIEF2 Missense_Mutation p.Q10H 0.21 tolerated_low_confidence(0.11) benign(0.281) TCGA-IB-7651-01 17 18181033 18181033 T C TOP3A Missense_Mutation p.Q928R 0.13 deleterious(0.04) possibly_damaging(0.616) TCGA-IB-7651-01 17 18194223 18194223 G A TOP3A Missense_Mutation p.A467V 0.12 deleterious(0.05) possibly_damaging(0.768) TCGA-IB-7651-01 17 18194249 18194249 G A TOP3A Silent p.I458I 0.17 TCGA-IB-7651-01 17 18198077 18198077 C T TOP3A Missense_Mutation p.R338Q 0.21 deleterious(0) probably_damaging(0.969) TCGA-IB-7651-01 17 18219847 18219847 C T SMCR8 Silent p.D248D 0.14 TCGA-IB-7651-01 17 18221147 18221147 G A SMCR8 Missense_Mutation p.A682T 0.19 tolerated(0.24) benign(0.006) TCGA-IB-7651-01 17 18232655 18232655 C A SHMT1 Missense_Mutation p.A407S 0.25 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 17 18344603 18344603 C A KRT16P1 RNA 0.36 TCGA-IB-7651-01 17 18647799 18647799 A C FBXW10 Missense_Mutation p.Q81P 0.09 deleterious(0.01) probably_damaging(0.983) TCGA-IB-7651-01 17 18653271 18653271 C T FBXW10 Intron 0.05 TCGA-IB-7651-01 17 18661780 18661780 A C FBXW10 Missense_Mutation p.E465D 0.15 tolerated(0.21) benign(0.162) TCGA-IB-7651-01 17 18700963 18700963 G T TVP23B Missense_Mutation p.W104C 0.14 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 17 18881119 18881119 G A FAM83G Silent p.F620F 0.18 TCGA-IB-7651-01 17 18881246 18881246 C A FAM83G Missense_Mutation p.G578V 0.17 deleterious_low_confidence(0.03) benign(0.012) TCGA-IB-7651-01 17 18881682 18881682 C T FAM83G Missense_Mutation p.D433N 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 18881887 18881887 G T FAM83G Silent p.S364S 0.19 TCGA-IB-7651-01 17 18881907 18881907 C T FAM83G Missense_Mutation p.D358N 0.19 tolerated(0.08) benign(0.219) TCGA-IB-7651-01 17 18918395 18918395 C T SLC5A10 Missense_Mutation p.A391V 0.18 deleterious(0) possibly_damaging(0.699) TCGA-IB-7651-01 17 18925281 18925281 C T GRAP Silent p.V215V 0.17 TCGA-IB-7651-01 17 19246523 19246523 C A B9D1 3'UTR 0.24 TCGA-IB-7651-01 17 19283107 19283107 C T MAPK7 Missense_Mutation p.A82V 0.08 deleterious(0) possibly_damaging(0.82) TCGA-IB-7651-01 17 19283132 19283132 C T MAPK7 Silent p.F90F 0.17 TCGA-IB-7651-01 17 19284985 19284985 G T MAPK7 Missense_Mutation p.R488M 0.17 tolerated(0.05) unknown(0) TCGA-IB-7651-01 17 19286192 19286192 G A MAPK7 Missense_Mutation p.G744S 0.18 tolerated(0.09) probably_damaging(0.987) TCGA-IB-7651-01 17 19286530 19286530 C A MAPK7 Missense_Mutation p.L813I 0.16 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-IB-7651-01 17 19287868 19287868 G A MFAP4 Silent p.S249S 0.20 TCGA-IB-7651-01 17 19288434 19288434 T C MFAP4 Silent p.A190A 0.18 TCGA-IB-7651-01 17 19289705 19289705 C T MFAP4 Missense_Mutation p.G77D 0.20 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 17 19318461 19318461 G A RNF112 Missense_Mutation p.A413T 0.21 tolerated_low_confidence(0.21) benign(0.005) TCGA-IB-7651-01 17 1943631 1943631 G A DPH1 Missense_Mutation p.G295D 0.10 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 1943817 1943817 C T DPH1 Nonsense_Mutation p.R314* 0.15 TCGA-IB-7651-01 17 1946353 1946353 C A OVCA2 Silent p.P213P 0.05 TCGA-IB-7651-01 17 19578929 19578929 C A ALDH3A2 3'UTR 0.19 TCGA-IB-7651-01 17 1960163 1960163 A C HIC1 Missense_Mutation p.D79A 0.08 deleterious(0) possibly_damaging(0.822) TCGA-IB-7651-01 17 19618448 19618448 G A SLC47A2 Missense_Mutation p.S69L 0.18 deleterious(0) possibly_damaging(0.883) TCGA-IB-7651-01 17 19642967 19642967 C T ALDH3A1 Missense_Mutation p.V324M 0.16 deleterious(0.01) probably_damaging(0.979) TCGA-IB-7651-01 17 1968799 1968799 G A SMG6 Missense_Mutation p.S1337F 0.18 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 17 19866323 19866323 A G AKAP10 Missense_Mutation p.V50A 0.14 tolerated_low_confidence(0.37) benign(0.045) TCGA-IB-7651-01 17 20135100 20135100 T C SPECC1 Missense_Mutation p.S701P 0.08 tolerated(0.2) benign(0.285) TCGA-IB-7651-01 17 20135688 20135688 G T SPECC1 Missense_Mutation p.G774V 0.18 deleterious(0) benign(0.258) TCGA-IB-7651-01 17 20156834 20156834 G T SPECC1 Missense_Mutation p.S872I 0.13 deleterious(0.01) possibly_damaging(0.677) TCGA-IB-7651-01 17 20156861 20156861 T C SPECC1 Missense_Mutation p.V881A 0.15 tolerated(0.45) benign(0.001) TCGA-IB-7651-01 17 20224712 20224712 G T AC004702.2 Intron 0.24 TCGA-IB-7651-01 17 20224721 20224721 G T AC004702.2 Intron 0.21 TCGA-IB-7651-01 17 20354929 20354929 G T LGALS9B Missense_Mutation p.S262R 0.17 tolerated(0.08) benign(0.008) TCGA-IB-7651-01 17 20451618 20451618 C T RP11-434D2.3 RNA 0.13 TCGA-IB-7651-01 17 2076037 2076037 A G SMG6 Missense_Mutation p.L1091P 0.16 deleterious(0) probably_damaging(0.979) TCGA-IB-7651-01 17 21319300 21319300 G T KCNJ12 Missense_Mutation p.G216C 0.08 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 17 2139876 2139876 G A SMG6 Silent p.L927L 0.18 TCGA-IB-7651-01 17 2139898 2139898 G A SMG6 Silent p.V919V 0.19 TCGA-IB-7651-01 17 21477615 21477615 G A AC138710.1 5'Flank 0.22 TCGA-IB-7651-01 17 21911000 21911000 G T RP11-744K17.9 RNA 0.12 TCGA-IB-7651-01 17 2202719 2202719 G T SMG6 Missense_Mutation p.S443Y 0.15 tolerated(0.05) benign(0.281) TCGA-IB-7651-01 17 2202763 2202763 C T SMG6 Silent p.A428A 0.16 TCGA-IB-7651-01 17 2203925 2203925 C T SMG6 Missense_Mutation p.R41H 0.06 tolerated_low_confidence(0.08) probably_damaging(0.997) TCGA-IB-7651-01 17 2224884 2224884 C A SRR Missense_Mutation p.L190I 0.16 tolerated(1) benign(0.023) TCGA-IB-7651-01 17 2227000 2227000 G A SRR Missense_Mutation p.A286T 0.18 deleterious(0.01) probably_damaging(0.983) TCGA-IB-7651-01 17 2281186 2281186 G T SGSM2 Missense_Mutation p.Q946H 0.16 deleterious(0.04) benign(0.137) TCGA-IB-7651-01 17 2282335 2282335 C T SGSM2 Silent p.L969L 0.13 TCGA-IB-7651-01 17 2282760 2282760 G A SGSM2 Silent p.L1034L 0.17 TCGA-IB-7651-01 17 25748146 25748146 G A TBC1D3P5 RNA 0.25 TCGA-IB-7651-01 17 25752540 25752540 A C TBC1D3P5 RNA 0.16 TCGA-IB-7651-01 17 2576029 2576029 A C PAFAH1B1 Missense_Mutation p.K217Q 0.20 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 17 25909842 25909842 T C KSR1 Missense_Mutation p.S94P 0.19 tolerated(0.05) probably_damaging(0.958) TCGA-IB-7651-01 17 25917918 25917918 C T KSR1 Silent p.C239C 0.20 TCGA-IB-7651-01 17 25932780 25932780 G A KSR1 Silent p.E530E 0.18 TCGA-IB-7651-01 17 25936261 25936261 G T KSR1 Missense_Mutation p.D596Y 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 25937132 25937132 C T KSR1 Silent p.C640C 0.15 TCGA-IB-7651-01 17 2600078 2600078 C T CLUH Missense_Mutation p.S669N 0.19 tolerated(0.49) benign(0.013) TCGA-IB-7651-01 17 26091072 26091072 G A NOS2 Missense_Mutation p.L843F 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 26110096 26110096 C T NOS2 Silent p.A168A 0.15 TCGA-IB-7651-01 17 26115921 26115921 G A NOS2 Missense_Mutation p.P78S 0.17 tolerated(0.17) benign(0.004) TCGA-IB-7651-01 17 263004 263004 C A C17orf97 Missense_Mutation p.P124T 0.08 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-IB-7651-01 17 26495604 26495604 A G NLK Missense_Mutation p.D323G 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 26574722 26574722 C T CTD-2008P7.8 RNA 0.16 TCGA-IB-7651-01 17 26653722 26653722 C T TMEM97 Missense_Mutation p.S145F 0.20 tolerated(0.05) possibly_damaging(0.76) TCGA-IB-7651-01 17 26695591 26695591 C A VTN Silent p.R310R 0.20 TCGA-IB-7651-01 17 26697347 26697347 C T VTN 5'UTR 0.24 TCGA-IB-7651-01 17 26851664 26851664 G T FOXN1 Silent p.G89G 0.20 TCGA-IB-7651-01 17 26890850 26890850 G A PIGS Missense_Mutation p.S121L 0.18 tolerated(0.51) benign(0.001) TCGA-IB-7651-01 17 26918763 26918763 G A SPAG5 Missense_Mutation p.P464S 0.17 tolerated(0.24) benign(0.009) TCGA-IB-7651-01 17 26942089 26942089 C T KIAA0100 Missense_Mutation p.R2234H 0.17 deleterious_low_confidence(0.03) benign(0.063) TCGA-IB-7651-01 17 26943182 26943182 G A KIAA0100 Nonsense_Mutation p.R2108* 0.18 TCGA-IB-7651-01 17 26943464 26943464 C T KIAA0100 Missense_Mutation p.G2074E 0.19 tolerated(0.07) benign(0.29) TCGA-IB-7651-01 17 26947532 26947532 G A KIAA0100 Missense_Mutation p.R1787W 0.05 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 17 26964865 26964865 G T KIAA0100 Missense_Mutation p.S587Y 0.19 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 17 26969931 26969931 A C KIAA0100 Missense_Mutation p.I157M 0.17 tolerated(0.51) benign(0.046) TCGA-IB-7651-01 17 27010748 27010748 C T SUPT6H Missense_Mutation p.R715W 0.18 tolerated(0.18) benign(0.32) TCGA-IB-7651-01 17 27010820 27010820 G A SUPT6H Missense_Mutation p.E739K 0.23 deleterious(0.01) benign(0.146) TCGA-IB-7651-01 17 27027385 27027385 C T SUPT6H Missense_Mutation p.A1554V 0.18 tolerated(0.3) benign(0.008) TCGA-IB-7651-01 17 27051417 27051417 A G TLCD1 3'UTR 0.19 TCGA-IB-7651-01 17 27061014 27061014 T C NEK8 Missense_Mutation p.C21R 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-IB-7651-01 17 27067558 27067558 C T NEK8 Nonsense_Mutation p.R499* 0.07 TCGA-IB-7651-01 17 27071139 27071139 C T TRAF4 Silent p.G3G 0.15 TCGA-IB-7651-01 17 27075073 27075073 C T TRAF4 Silent p.C113C 0.20 TCGA-IB-7651-01 17 27076400 27076400 G A TRAF4 Silent p.E406E 0.20 TCGA-IB-7651-01 17 27086440 27086440 C T FAM222B Silent p.P179P 0.14 TCGA-IB-7651-01 17 27185169 27185169 A G ERAL1 Missense_Mutation p.H181R 0.15 tolerated(0.07) benign(0.044) TCGA-IB-7651-01 17 27207787 27207787 G A FLOT2 Silent p.L398L 0.19 TCGA-IB-7651-01 17 27208313 27208313 G A FLOT2 Missense_Mutation p.A332V 0.18 tolerated(0.1) benign(0.356) TCGA-IB-7651-01 17 27225599 27225599 C T DHRS13 Missense_Mutation p.A332T 0.18 tolerated_low_confidence(0.82) benign(0.001) TCGA-IB-7651-01 17 27228272 27228272 G A DHRS13 Missense_Mutation p.R140W 0.16 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 17 27228610 27228610 A C DHRS13 Missense_Mutation p.F91V 0.18 tolerated(0.45) probably_damaging(0.981) TCGA-IB-7651-01 17 27233281 27233281 G T PHF12 Missense_Mutation p.L979M 0.19 tolerated_low_confidence(0.11) benign(0.215) TCGA-IB-7651-01 17 27238239 27238239 G A PHF12 Silent p.P702P 0.20 TCGA-IB-7651-01 17 27283229 27283229 T C SEZ6 Missense_Mutation p.Y967C 0.21 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 17 27421850 27421850 C T MYO18A Missense_Mutation p.A1510T 0.21 tolerated(0.35) benign(0.016) TCGA-IB-7651-01 17 27423801 27423801 C T MYO18A Missense_Mutation p.E1455K 0.16 deleterious(0.02) possibly_damaging(0.61) TCGA-IB-7651-01 17 27430619 27430619 G A MYO18A Missense_Mutation p.R1169W 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-IB-7651-01 17 27448960 27448960 G T MYO18A Missense_Mutation p.S368Y 0.08 deleterious(0) benign(0.308) TCGA-IB-7651-01 17 27493855 27493855 C A MYO18A Missense_Mutation p.S35I 0.20 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-IB-7651-01 17 27816730 27816730 A G TAOK1 Missense_Mutation p.Y235C 0.16 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 17 27849349 27849349 C T TAOK1 Nonsense_Mutation p.R654* 0.15 TCGA-IB-7651-01 17 27889827 27889827 G A ABHD15 Missense_Mutation p.R387C 0.13 deleterious(0.05) possibly_damaging(0.849) TCGA-IB-7651-01 17 27893616 27893616 G T ABHD15 Silent p.A123A 0.16 TCGA-IB-7651-01 17 27899263 27899263 G T TP53I13 Missense_Mutation p.R206M 0.18 deleterious(0.02) possibly_damaging(0.804) TCGA-IB-7651-01 17 27909775 27909775 A C GIT1 Missense_Mutation p.F116V 0.23 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 17 27910532 27910532 C T GIT1 Missense_Mutation p.R52H 0.18 tolerated(0.2) probably_damaging(0.999) TCGA-IB-7651-01 17 27939445 27939445 C T ANKRD13B Silent p.N428N 0.10 TCGA-IB-7651-01 17 28380798 28380798 G A EFCAB5 Missense_Mutation p.R609H 0.16 tolerated(0.35) benign(0.002) TCGA-IB-7651-01 17 28380972 28380972 T C EFCAB5 Missense_Mutation p.I667T 0.08 tolerated(0.62) benign(0.001) TCGA-IB-7651-01 17 28386587 28386587 C T EFCAB5 Nonsense_Mutation p.R869* 0.19 TCGA-IB-7651-01 17 28386688 28386688 G T EFCAB5 Missense_Mutation p.K902N 0.21 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 17 28417522 28417522 G A EFCAB5 Missense_Mutation p.R1256H 0.21 deleterious(0.03) probably_damaging(1) TCGA-IB-7651-01 17 28435016 28435016 C T EFCAB5 Missense_Mutation p.P1496S 0.17 tolerated_low_confidence(0.11) benign(0.184) TCGA-IB-7651-01 17 28512482 28512482 C T NSRP1 Silent p.P489P 0.17 TCGA-IB-7651-01 17 28890251 28890251 T C TBC1D29 Silent p.I87I 0.22 TCGA-IB-7651-01 17 28935515 28935515 G T SMURF2P1 RNA 0.14 TCGA-IB-7651-01 17 28964372 28964372 T G LRRC37BP1 RNA 0.15 TCGA-IB-7651-01 17 2898752 2898752 G A RAP1GAP2 Missense_Mutation p.A346T 0.17 tolerated(0.76) benign(0.003) TCGA-IB-7651-01 17 29162657 29162657 T G ATAD5 Missense_Mutation p.L520V 0.20 tolerated(0.1) benign(0.226) TCGA-IB-7651-01 17 29196541 29196541 C T ATAD5 Missense_Mutation p.R1162C 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 29196652 29196652 G T ATAD5 Missense_Mutation p.G1199C 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-IB-7651-01 17 29219622 29219622 T C ATAD5 Intron 0.16 TCGA-IB-7651-01 17 29250056 29250056 C T ADAP2 Nonsense_Mutation p.R65* 0.19 TCGA-IB-7651-01 17 29284866 29284866 G A ADAP2 Silent p.E375E 0.14 TCGA-IB-7651-01 17 29661916 29661917 - T NF1 Frame_Shift_Ins p.C1960Lfs*4 0.23 TCGA-IB-7651-01 17 29661957 29661957 A G NF1 Missense_Mutation p.T1972A 0.20 tolerated(0.61) benign(0.018) TCGA-IB-7651-01 17 29855524 29855524 G A RAB11FIP4 Missense_Mutation p.R486H 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 17 30180005 30180005 C T COPRS Missense_Mutation p.E71K 0.17 tolerated(0.05) probably_damaging(0.981) TCGA-IB-7651-01 17 30349743 30349743 C T LRRC37B Silent p.C526C 0.17 TCGA-IB-7651-01 17 30361959 30361959 C T LRRC37B Silent p.V669V 0.10 TCGA-IB-7651-01 17 30362622 30362622 A C LRRC37B Missense_Mutation p.K696T 0.20 deleterious(0.04) benign(0.01) TCGA-IB-7651-01 17 30376270 30376270 C T LRRC37B Nonsense_Mutation p.R845* 0.19 TCGA-IB-7651-01 17 30643294 30643294 C A RHBDL3 Missense_Mutation p.A309D 0.21 tolerated(0.13) possibly_damaging(0.636) TCGA-IB-7651-01 17 30665300 30665300 T C C17orf75 Missense_Mutation p.T140A 0.10 tolerated(0.28) benign(0.001) TCGA-IB-7651-01 17 30666953 30666953 A G C17orf75 Missense_Mutation p.S76P 0.23 deleterious(0) probably_damaging(0.946) TCGA-IB-7651-01 17 30696771 30696771 G A ZNF207 Missense_Mutation p.R493H 0.12 tolerated_low_confidence(0.09) unknown(0) TCGA-IB-7651-01 17 30796059 30796059 C A PSMD11 Missense_Mutation p.A164D 0.17 tolerated(0.33) benign(0.001) TCGA-IB-7651-01 17 30815096 30815096 G A CDK5R1 Missense_Mutation p.R153H 0.22 deleterious(0.05) possibly_damaging(0.87) TCGA-IB-7651-01 17 30980908 30980908 G A MYO1D Missense_Mutation p.R850W 0.21 deleterious(0.01) probably_damaging(0.948) TCGA-IB-7651-01 17 31263420 31263420 C T TMEM98 Missense_Mutation p.A123V 0.16 tolerated(0.17) possibly_damaging(0.787) TCGA-IB-7651-01 17 31266550 31266550 G A TMEM98 Missense_Mutation p.A157T 0.18 deleterious(0) unknown(0) TCGA-IB-7651-01 17 31322708 31322708 G A SPACA3 Missense_Mutation p.G106R 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 17 3144044 3144044 G A OR1D4 RNA 0.17 TCGA-IB-7651-01 17 3182249 3182249 C A OR3A2 5'UTR 0.16 TCGA-IB-7651-01 17 32483180 32483180 C T ASIC2 Silent p.P124P 0.11 TCGA-IB-7651-01 17 32483592 32483592 G A ASIC2 5'UTR 0.18 TCGA-IB-7651-01 17 32483617 32483617 C A ASIC2 5'UTR 0.14 TCGA-IB-7651-01 17 32687649 32687649 C T CCL1 Missense_Mutation p.A74T 0.18 deleterious(0.02) probably_damaging(0.971) TCGA-IB-7651-01 17 32690113 32690113 C A CCL1 Missense_Mutation p.S23I 0.20 deleterious(0.01) possibly_damaging(0.732) TCGA-IB-7651-01 17 32906007 32906007 C T C17orf102 Missense_Mutation p.G98E 0.21 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-IB-7651-01 17 32956037 32956037 C T TMEM132E Silent p.G294G 0.06 TCGA-IB-7651-01 17 32965106 32965106 C T TMEM132E Missense_Mutation p.A937V 0.14 tolerated(0.07) benign(0.136) TCGA-IB-7651-01 17 3300833 3300833 C A OR1E1 Missense_Mutation p.S291I 0.17 deleterious(0) probably_damaging(0.925) TCGA-IB-7651-01 17 3301258 3301258 C A OR1E1 Missense_Mutation p.W149C 0.14 deleterious(0.02) possibly_damaging(0.658) TCGA-IB-7651-01 17 33348430 33348430 G A RFFL Missense_Mutation p.A184V 0.18 tolerated(0.27) benign(0.007) TCGA-IB-7651-01 17 33348547 33348547 C T RFFL Missense_Mutation p.R145K 0.22 tolerated(0.54) benign(0.265) TCGA-IB-7651-01 17 33434103 33434103 C T RAD51D Silent p.L148L 0.16 TCGA-IB-7651-01 17 3343532 3343532 G A SPATA22 Missense_Mutation p.A334V 0.10 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 17 33454299 33454299 A G FNDC8 Missense_Mutation p.T150A 0.16 deleterious_low_confidence(0.05) benign(0.022) TCGA-IB-7651-01 17 33463193 33463193 C T NLE1 Missense_Mutation p.V336M 0.17 tolerated(0.14) benign(0.097) TCGA-IB-7651-01 17 3346538 3346538 C T SPATA22 Missense_Mutation p.G277D 0.15 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 17 33467027 33467027 C A NLE1 Missense_Mutation p.G74V 0.16 tolerated(0.24) benign(0.015) TCGA-IB-7651-01 17 33495095 33495095 C A UNC45B Silent p.P389P 0.16 TCGA-IB-7651-01 17 33495173 33495173 G T UNC45B Missense_Mutation p.Q415H 0.16 tolerated(0.31) possibly_damaging(0.726) TCGA-IB-7651-01 17 33521164 33521164 C A SLC35G3 Missense_Mutation p.G55C 0.18 tolerated(0.11) probably_damaging(1) TCGA-IB-7651-01 17 33591403 33591403 A C SLFN5 Missense_Mutation p.N447T 0.18 deleterious(0.02) possibly_damaging(0.494) TCGA-IB-7651-01 17 33592666 33592666 G T SLFN5 Missense_Mutation p.R812M 0.15 deleterious(0.02) probably_damaging(0.997) TCGA-IB-7651-01 17 33806674 33806674 G T SLFN12L Silent p.A185A 0.17 TCGA-IB-7651-01 17 33900679 33900679 C T PEX12 3'Flank 0.19 TCGA-IB-7651-01 17 33900720 33900720 C A PEX12 3'Flank 0.20 TCGA-IB-7651-01 17 33904391 33904391 A G PEX12 Missense_Mutation p.S116P 0.04 deleterious(0) possibly_damaging(0.903) TCGA-IB-7651-01 17 34073243 34073243 T A GAS2L2 Missense_Mutation p.T425S 0.10 tolerated(0.21) benign(0.004) TCGA-IB-7651-01 17 34147406 34147406 C T TAF15 Silent p.N85N 0.17 TCGA-IB-7651-01 17 34171486 34171486 C T TAF15 Missense_Mutation p.R395W 0.20 deleterious_low_confidence(0) unknown(0) TCGA-IB-7651-01 17 34171925 34171925 A G TAF15 Missense_Mutation p.Y541C 0.19 deleterious_low_confidence(0.04) unknown(0) TCGA-IB-7651-01 17 34234042 34234042 G T AC015849.16 RNA 0.16 TCGA-IB-7651-01 17 34235930 34235930 G T AC015849.16 RNA 0.18 TCGA-IB-7651-01 17 3430170 3430170 C T TRPV3 Missense_Mutation p.D519N 0.23 deleterious(0) possibly_damaging(0.794) TCGA-IB-7651-01 17 34313705 34313705 G T CTB-186H2.3 Nonsense_Mutation p.G51* 0.19 TCGA-IB-7651-01 17 34328546 34328546 G A CCL15 5'UTR 0.21 TCGA-IB-7651-01 17 3435984 3435984 C T TRPV3 Silent p.P344P 0.15 TCGA-IB-7651-01 17 34416585 34416585 C A CCL3 Missense_Mutation p.Q44H 0.17 tolerated(0.05) benign(0.008) TCGA-IB-7651-01 17 34500275 34500275 G A TBC1D3B Missense_Mutation p.R70W 0.39 tolerated(0.07) benign(0.009) TCGA-IB-7651-01 17 34539798 34539798 G T CCL4L1 Intron 0.37 TCGA-IB-7651-01 17 34851922 34851922 C T MYO19 3'UTR 0.15 TCGA-IB-7651-01 17 34859841 34859841 G A MYO19 Missense_Mutation p.A642V 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 3486644 3486644 G T SHPK Missense_Mutation p.F488L 0.22 tolerated(0.13) benign(0.053) TCGA-IB-7651-01 17 34893890 34893890 G A PIGW Missense_Mutation p.A314T 0.05 tolerated(0.05) possibly_damaging(0.483) TCGA-IB-7651-01 17 34894032 34894032 T C PIGW Missense_Mutation p.V361A 0.17 tolerated(0.3) benign(0.142) TCGA-IB-7651-01 17 34916615 34916615 C T GGNBP2 Missense_Mutation p.S144F 0.17 deleterious(0) possibly_damaging(0.864) TCGA-IB-7651-01 17 3493604 3493604 C A SHPK Missense_Mutation p.Q229H 0.10 tolerated(1) benign(0.008) TCGA-IB-7651-01 17 3493618 3493618 C T SHPK Missense_Mutation p.G225R 0.09 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 34945879 34945879 C T GGNBP2 3'UTR 0.18 TCGA-IB-7651-01 17 34958504 34958504 C A MRM1 Missense_Mutation p.L89I 0.20 tolerated(0.25) benign(0.081) TCGA-IB-7651-01 17 3514153 3514153 C T SHPK Missense_Mutation p.D380N 0.17 tolerated(0.43) benign(0.045) TCGA-IB-7651-01 17 35297966 35297966 G A LHX1 Missense_Mutation p.A153T 0.17 tolerated(0.71) benign(0.002) TCGA-IB-7651-01 17 35298099 35298099 C T LHX1 Missense_Mutation p.A197V 0.24 deleterious(0.02) probably_damaging(0.99) TCGA-IB-7651-01 17 35446008 35446008 G T ACACA Missense_Mutation p.A2298D 0.19 tolerated(0.13) possibly_damaging(0.552) TCGA-IB-7651-01 17 35454098 35454098 T C ACACA Missense_Mutation p.I2242V 0.14 tolerated(0.52) benign(0) TCGA-IB-7651-01 17 35486405 35486405 G A ACACA Missense_Mutation p.H1944Y 0.12 tolerated(0.09) benign(0) TCGA-IB-7651-01 17 35549147 35549147 C T ACACA Missense_Mutation p.A1434T 0.13 tolerated(0.26) probably_damaging(0.998) TCGA-IB-7651-01 17 3559853 3559853 C T CTNS Silent p.I178I 0.19 TCGA-IB-7651-01 17 35837053 35837053 T A TADA2A Missense_Mutation p.F433Y 0.22 deleterious(0) possibly_damaging(0.896) TCGA-IB-7651-01 17 35872880 35872880 C T DUSP14 Missense_Mutation p.S169L 0.19 deleterious(0) benign(0.046) TCGA-IB-7651-01 17 35896132 35896132 G A SYNRG Silent p.I1205I 0.16 TCGA-IB-7651-01 17 35913384 35913384 T C SYNRG Missense_Mutation p.D814G 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-IB-7651-01 17 35914119 35914119 C T SYNRG Missense_Mutation p.G569D 0.14 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 3595050 3595050 T C P2RX5 Missense_Mutation p.D59G 0.17 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 17 36214763 36214763 G A YWHAEP7 RNA 0.15 TCGA-IB-7651-01 17 3628546 3628546 C A GSG2 Silent p.S439S 0.09 TCGA-IB-7651-01 17 3628844 3628844 T C GSG2 Missense_Mutation p.S539P 0.17 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 17 3632827 3632827 C A ITGAE Missense_Mutation p.A953S 0.16 tolerated(0.39) possibly_damaging(0.683) TCGA-IB-7651-01 17 3646868 3646868 C T ITGAE Missense_Mutation p.S788N 0.17 tolerated(0.39) benign(0.02) TCGA-IB-7651-01 17 36478525 36478525 G A MRPL45 3'UTR 0.20 TCGA-IB-7651-01 17 36484336 36484336 G T GPR179 Missense_Mutation p.P1706T 0.19 deleterious(0.01) possibly_damaging(0.743) TCGA-IB-7651-01 17 36700182 36700182 G A SRCIN1 Missense_Mutation p.P1098L 0.15 deleterious(0) benign(0.311) TCGA-IB-7651-01 17 36926743 36926743 C T PIP4K2B Silent p.T372T 0.08 TCGA-IB-7651-01 17 36963202 36963202 G T CWC25 Missense_Mutation p.L240I 0.17 tolerated(0.39) benign(0.004) TCGA-IB-7651-01 17 37113493 37113493 T G FBXO47 Missense_Mutation p.K122N 0.17 deleterious(0) possibly_damaging(0.801) TCGA-IB-7651-01 17 3716516 3716516 T G C17orf85 Missense_Mutation p.K562T 0.19 deleterious_low_confidence(0.04) benign(0.127) TCGA-IB-7651-01 17 3721599 3721599 G T C17orf85 Missense_Mutation p.T423N 0.15 deleterious(0.01) probably_damaging(0.987) TCGA-IB-7651-01 17 37234180 37234180 C A PLXDC1 Missense_Mutation p.S391I 0.18 deleterious(0.01) benign(0.393) TCGA-IB-7651-01 17 37234253 37234253 C T PLXDC1 Missense_Mutation p.A367T 0.17 tolerated(0.52) benign(0.075) TCGA-IB-7651-01 17 37239786 37239786 C T PLXDC1 Silent p.L305L 0.13 TCGA-IB-7651-01 17 37262146 37262146 C T PLXDC1 Missense_Mutation p.D258N 0.19 deleterious(0) possibly_damaging(0.834) TCGA-IB-7651-01 17 37296038 37296038 G A PLXDC1 Missense_Mutation p.R42W 0.15 deleterious(0) benign(0.002) TCGA-IB-7651-01 17 37371375 37371375 C T STAC2 Missense_Mutation p.S232N 0.18 deleterious(0.03) possibly_damaging(0.548) TCGA-IB-7651-01 17 37564749 37564749 C T MED1 Missense_Mutation p.G1242D 0.19 tolerated_low_confidence(0.23) unknown(0) TCGA-IB-7651-01 17 37584042 37584042 A G MED1 Silent p.G217G 0.17 TCGA-IB-7651-01 17 37618956 37618956 A C CDK12 Missense_Mutation p.K211T 0.22 unknown(0) TCGA-IB-7651-01 17 37627662 37627662 C A CDK12 Missense_Mutation p.P526H 0.22 benign(0.431) TCGA-IB-7651-01 17 3785616 3785616 G A CAMKK1 Missense_Mutation p.A245V 0.15 tolerated_low_confidence(0.47) benign(0.005) TCGA-IB-7651-01 17 37864607 37864607 G A ERBB2 Missense_Mutation p.A87T 0.20 deleterious(0) probably_damaging(0.942) TCGA-IB-7651-01 17 37868294 37868294 G A ERBB2 Missense_Mutation p.A339T 0.09 deleterious(0.04) benign(0.087) TCGA-IB-7651-01 17 37881332 37881332 G A ERBB2 Missense_Mutation p.V842I 0.19 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 17 37883966 37883966 G A ERBB2 Missense_Mutation p.R1146Q 0.20 tolerated(0.64) benign(0.001) TCGA-IB-7651-01 17 37885946 37885946 C A MIEN1 Nonsense_Mutation p.E86* 0.09 TCGA-IB-7651-01 17 37899533 37899533 C T GRB7 Silent p.Y211Y 0.19 TCGA-IB-7651-01 17 37901227 37901227 G A GRB7 Missense_Mutation p.R357H 0.19 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 17 38033007 38033007 A G ZPBP2 Missense_Mutation p.Y321C 0.16 deleterious(0.01) possibly_damaging(0.824) TCGA-IB-7651-01 17 38065249 38065249 C T GSDMB Missense_Mutation p.R208Q 0.19 tolerated(0.06) possibly_damaging(0.528) TCGA-IB-7651-01 17 38142955 38142955 G A PSMD3 Missense_Mutation p.R180H 0.17 tolerated(0.09) benign(0.013) TCGA-IB-7651-01 17 38175755 38175755 G A MED24 3'UTR 0.19 TCGA-IB-7651-01 17 38282635 38282635 G A MSL1 Missense_Mutation p.G60E 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.843) TCGA-IB-7651-01 17 38289356 38289356 G T MSL1 Missense_Mutation p.R254M 0.24 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 17 38412732 38412732 G A WIPF2 Silent p.P7P 0.17 TCGA-IB-7651-01 17 38421339 38421339 C T WIPF2 Missense_Mutation p.P304L 0.17 tolerated(0.09) benign(0) TCGA-IB-7651-01 17 38430111 38430111 G A WIPF2 Missense_Mutation p.R347Q 0.06 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 17 38445693 38445693 G T CDC6 Missense_Mutation p.Q7H 0.08 deleterious(0.01) possibly_damaging(0.868) TCGA-IB-7651-01 17 3844772 3844772 C T ATP2A3 Silent p.E574E 0.17 TCGA-IB-7651-01 17 3854899 3854899 G A ATP2A3 Silent p.A100A 0.19 TCGA-IB-7651-01 17 38610230 38610230 C T IGFBP4 Silent p.A186A 0.15 TCGA-IB-7651-01 17 38711511 38711511 G A CCR7 Missense_Mutation p.A207V 0.17 tolerated(0.37) benign(0.001) TCGA-IB-7651-01 17 38910676 38910676 G A KRT25 Silent p.I158I 0.20 TCGA-IB-7651-01 17 38922753 38922753 T C KRT26 3'UTR 0.19 TCGA-IB-7651-01 17 38933853 38933853 C A KRT27 Missense_Mutation p.K368N 0.09 tolerated(1) probably_damaging(0.999) TCGA-IB-7651-01 17 38949454 38949454 G A KRT28 Missense_Mutation p.S402F 0.16 tolerated(0.65) benign(0.001) TCGA-IB-7651-01 17 39019556 39019556 C T KRT12 Missense_Mutation p.D379N 0.13 tolerated(1) possibly_damaging(0.738) TCGA-IB-7651-01 17 39022953 39022953 T A KRT12 Missense_Mutation p.E162D 0.19 tolerated(0.09) possibly_damaging(0.524) TCGA-IB-7651-01 17 39032539 39032539 C T KRT20 3'UTR 0.17 TCGA-IB-7651-01 17 39038846 39038846 C T KRT20 Missense_Mutation p.A151T 0.19 deleterious(0.03) possibly_damaging(0.566) TCGA-IB-7651-01 17 39122912 39122912 C T KRT39 Missense_Mutation p.C66Y 0.07 tolerated(0.09) benign(0) TCGA-IB-7651-01 17 3912991 3912991 G A ZZEF1 Silent p.Y2880Y 0.21 TCGA-IB-7651-01 17 39137307 39137307 G A KRT40 Missense_Mutation p.R262C 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 17 3916785 3916785 G A ZZEF1 Missense_Mutation p.A2846V 0.21 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 17 39261692 39261692 G T KRTAP4-9 Missense_Mutation p.D18Y 0.22 deleterious(0.01) unknown(0) TCGA-IB-7651-01 17 39262171 39262171 T C KRTAP4-9 Silent p.R177R 0.15 TCGA-IB-7651-01 17 39262207 39262207 C A KRTAP4-9 Nonsense_Mutation p.C189* 0.11 TCGA-IB-7651-01 17 39305864 39305864 C A KRTAP4-5 Missense_Mutation p.Q52H 0.19 unknown(0) TCGA-IB-7651-01 17 39471738 39471738 C T KRTAP17-1 Silent p.S55S 0.17 TCGA-IB-7651-01 17 39503321 39503321 C T KRT33A Missense_Mutation p.A248T 0.08 tolerated(0.68) benign(0.002) TCGA-IB-7651-01 17 39538384 39538384 C T KRT34 Missense_Mutation p.A81T 0.17 tolerated(0.08) benign(0.086) TCGA-IB-7651-01 17 39538461 39538461 C T KRT34 Missense_Mutation p.R55H 0.19 tolerated(0.37) benign(0.019) TCGA-IB-7651-01 17 39551317 39551317 C T KRT31 Missense_Mutation p.D294N 0.20 tolerated(0.28) benign(0.002) TCGA-IB-7651-01 17 39580107 39580107 C T KRT37 Intron 0.18 TCGA-IB-7651-01 17 39593734 39593734 C T KRT38 Missense_Mutation p.R434H 0.20 tolerated(0.12) benign(0.001) TCGA-IB-7651-01 17 39595014 39595014 G A KRT38 Missense_Mutation p.R277W 0.19 deleterious(0.04) benign(0.344) TCGA-IB-7651-01 17 3966072 3966072 G T ZZEF1 Missense_Mutation p.L1620M 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 17 39671904 39671904 C T KRT15 Missense_Mutation p.R356H 0.18 deleterious(0.02) probably_damaging(0.977) TCGA-IB-7651-01 17 39674821 39674821 C A KRT15 Missense_Mutation p.G87W 0.22 deleterious(0.02) unknown(0) TCGA-IB-7651-01 17 3968078 3968078 G A ZZEF1 Missense_Mutation p.P1432L 0.20 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-IB-7651-01 17 39684192 39684192 G A KRT19 Missense_Mutation p.A103V 0.16 deleterious(0.04) benign(0.196) TCGA-IB-7651-01 17 39767452 39767452 C T KRT16 Missense_Mutation p.G268R 0.17 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 17 39768755 39768755 G A KRT16 Silent p.C62C 0.13 TCGA-IB-7651-01 17 3977461 3977461 G A ZZEF1 Missense_Mutation p.A1223V 0.19 deleterious(0.04) possibly_damaging(0.887) TCGA-IB-7651-01 17 39777096 39777096 C A KRT17 Missense_Mutation p.E332D 0.22 deleterious(0.01) benign(0.232) TCGA-IB-7651-01 17 39777943 39777943 C A KRT17 Missense_Mutation p.G246C 0.04 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 17 39780813 39780813 G A KRT17 5'UTR 0.14 TCGA-IB-7651-01 17 39872089 39872089 G T GAST Missense_Mutation p.D91Y 0.19 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-IB-7651-01 17 39881248 39881248 G T HAP1 Missense_Mutation p.A522D 0.05 deleterious(0) possibly_damaging(0.82) TCGA-IB-7651-01 17 39919402 39919402 G A JUP Missense_Mutation p.R444C 0.18 deleterious(0.03) probably_damaging(0.939) TCGA-IB-7651-01 17 39977920 39977920 G T FKBP10 Missense_Mutation p.G472C 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 17 39978520 39978520 C A FKBP10 Missense_Mutation p.L537I 0.08 tolerated(0.11) possibly_damaging(0.624) TCGA-IB-7651-01 17 39994291 39994291 G A KLHL10 Missense_Mutation p.G36D 0.20 tolerated(0.11) probably_damaging(0.953) TCGA-IB-7651-01 17 39998189 39998189 T C KLHL10 Silent p.P103P 0.21 TCGA-IB-7651-01 17 39998252 39998252 C T KLHL10 Silent p.I124I 0.21 TCGA-IB-7651-01 17 40001975 40001975 G A KLHL10 Missense_Mutation p.A428T 0.19 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 17 40010534 40010534 T C KLHL11 Missense_Mutation p.T529A 0.20 tolerated(0.09) benign(0.006) TCGA-IB-7651-01 17 40040492 40040492 C T ACLY Missense_Mutation p.R703H 0.20 deleterious(0.02) probably_damaging(0.968) TCGA-IB-7651-01 17 40048575 40048575 C T ACLY Missense_Mutation p.R576H 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-IB-7651-01 17 40117142 40117142 G A CNP 5'Flank 0.13 TCGA-IB-7651-01 17 40120260 40120260 G A CNP Missense_Mutation p.G60R 0.12 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 40125661 40125661 G A CNP Missense_Mutation p.A329T 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 17 40257177 40257177 C T DHX58 Silent p.Q420Q 0.18 TCGA-IB-7651-01 17 40259626 40259626 G A DHX58 Silent p.F331F 0.23 TCGA-IB-7651-01 17 40259654 40259654 C T DHX58 Missense_Mutation p.C322Y 0.18 tolerated(0.28) benign(0) TCGA-IB-7651-01 17 40266508 40266508 G A KAT2A Nonsense_Mutation p.R712* 0.12 TCGA-IB-7651-01 17 40267794 40267794 G A KAT2A Missense_Mutation p.L608F 0.16 deleterious(0.04) possibly_damaging(0.832) TCGA-IB-7651-01 17 40271425 40271425 C A KAT2A Missense_Mutation p.S304I 0.17 tolerated(0.06) benign(0.038) TCGA-IB-7651-01 17 40317623 40317623 A G KCNH4 Silent p.S643S 0.13 TCGA-IB-7651-01 17 40318319 40318319 G T KCNH4 Silent p.I612I 0.11 TCGA-IB-7651-01 17 40321559 40321559 T C KCNH4 Missense_Mutation p.K509R 0.15 tolerated(0.11) benign(0.008) TCGA-IB-7651-01 17 40330471 40330471 T C KCNH4 Missense_Mutation p.D112G 0.15 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 17 40344950 40344950 G T GHDC Missense_Mutation p.Q121K 0.20 tolerated(0.26) benign(0.03) TCGA-IB-7651-01 17 40345085 40345085 G A GHDC Intron 0.19 TCGA-IB-7651-01 17 40452779 40452779 C T STAT5A Missense_Mutation p.R294C 0.14 deleterious(0.02) possibly_damaging(0.868) TCGA-IB-7651-01 17 40467670 40467670 T C STAT3 3'UTR 0.19 TCGA-IB-7651-01 17 40468908 40468908 C T STAT3 Missense_Mutation p.S719N 0.26 tolerated(0.21) possibly_damaging(0.48) TCGA-IB-7651-01 17 40557079 40557079 G A PTRF Missense_Mutation p.R267W 0.18 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 17 40557266 40557266 G A PTRF Silent p.D204D 0.20 TCGA-IB-7651-01 17 40620067 40620067 T G ATP6V0A1 Missense_Mutation p.I79S 0.18 deleterious(0.01) benign(0.201) TCGA-IB-7651-01 17 40646415 40646415 G A ATP6V0A1 Missense_Mutation p.G420D 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 40660601 40660601 C T ATP6V0A1 Intron 0.16 TCGA-IB-7651-01 17 40695695 40695695 C A NAGLU Silent p.R557R 0.07 TCGA-IB-7651-01 17 40695928 40695928 C T NAGLU Missense_Mutation p.A635V 0.12 tolerated(0.14) possibly_damaging(0.612) TCGA-IB-7651-01 17 40696083 40696083 G T NAGLU Missense_Mutation p.A687S 0.26 tolerated(0.72) benign(0.068) TCGA-IB-7651-01 17 40714637 40714637 C T COASY Silent p.G28G 0.21 TCGA-IB-7651-01 17 40831869 40831869 C A CCR10 Missense_Mutation p.S264I 0.16 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 17 40837321 40837321 G A CNTNAP1 Missense_Mutation p.A200T 0.22 deleterious(0.04) benign(0.172) TCGA-IB-7651-01 17 40915022 40915022 T C RAMP2 3'UTR 0.12 TCGA-IB-7651-01 17 40936549 40936549 G A WNK4 Silent p.P374P 0.06 TCGA-IB-7651-01 17 40939316 40939316 T C WNK4 Silent p.C499C 0.15 TCGA-IB-7651-01 17 40940387 40940387 C A WNK4 Missense_Mutation p.L668I 0.15 tolerated(0.11) unknown(0) TCGA-IB-7651-01 17 40947651 40947651 C T WNK4 Missense_Mutation p.P1011S 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 17 40951182 40951182 G T CNTD1 Missense_Mutation p.A33S 0.17 tolerated(0.19) possibly_damaging(0.899) TCGA-IB-7651-01 17 40958824 40958824 G A CNTD1 Missense_Mutation p.S238N 0.18 tolerated(0.09) benign(0.018) TCGA-IB-7651-01 17 40962680 40962680 A G BECN1 3'UTR 0.21 TCGA-IB-7651-01 17 40997013 40997013 G A AOC2 Missense_Mutation p.V124I 0.22 tolerated(0.36) benign(0.04) TCGA-IB-7651-01 17 41004414 41004414 G A AOC3 Missense_Mutation p.V352I 0.18 tolerated(1) benign(0.002) TCGA-IB-7651-01 17 41004951 41004951 G A AOC3 Missense_Mutation p.D531N 0.19 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 17 41020660 41020660 G A AOC4P RNA 0.19 TCGA-IB-7651-01 17 41063578 41063578 G A G6PC 3'UTR 0.26 TCGA-IB-7651-01 17 41116151 41116151 G A PTGES3L-AARSD1 Missense_Mutation p.T222I 0.19 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 17 41169881 41169881 G T VAT1 Missense_Mutation p.P278H 0.15 deleterious(0) probably_damaging(0.96) TCGA-IB-7651-01 17 41223162 41223162 A G BRCA1 Missense_Mutation p.V1611A 0.16 deleterious(0.04) benign(0.007) TCGA-IB-7651-01 17 41246608 41246608 C T BRCA1 Missense_Mutation p.A314T 0.17 tolerated(0.11) possibly_damaging(0.607) TCGA-IB-7651-01 17 41477126 41477126 C T ARL4D Missense_Mutation p.A9V 0.22 tolerated(0.36) benign(0.394) TCGA-IB-7651-01 17 41477547 41477547 G T ARL4D Missense_Mutation p.E149D 0.24 tolerated(0.08) probably_damaging(0.992) TCGA-IB-7651-01 17 41585306 41585306 C T DHX8 Silent p.L747L 0.19 TCGA-IB-7651-01 17 41599414 41599414 G T DHX8 Splice_Site p.X1088_splice 0.16 TCGA-IB-7651-01 17 41719277 41719277 C T MEOX1 3'UTR 0.17 TCGA-IB-7651-01 17 41738457 41738457 G A MEOX1 Missense_Mutation p.S149F 0.17 deleterious(0.01) possibly_damaging(0.534) TCGA-IB-7651-01 17 41958122 41958122 G A MPP2 Missense_Mutation p.R363W 0.19 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 17 42090467 42090467 G A TMEM101 Silent p.S125S 0.20 TCGA-IB-7651-01 17 42153230 42153230 T G G6PC3 Missense_Mutation p.L287R 0.19 deleterious(0.03) possibly_damaging(0.613) TCGA-IB-7651-01 17 42161219 42161219 G A HDAC5 Missense_Mutation p.P771L 0.19 tolerated(0.35) benign(0.307) TCGA-IB-7651-01 17 42266863 42266863 G A TMUB2 Missense_Mutation p.S170N 0.11 tolerated(0.41) benign(0.002) TCGA-IB-7651-01 17 42273420 42273420 A G ATXN7L3 Missense_Mutation p.S176P 0.15 tolerated(0.16) benign(0.038) TCGA-IB-7651-01 17 42273431 42273431 C T ATXN7L3 Missense_Mutation p.R172Q 0.19 deleterious(0.05) possibly_damaging(0.754) TCGA-IB-7651-01 17 42275439 42275439 T C ATXN7L3 5'Flank 0.09 TCGA-IB-7651-01 17 42295570 42295570 C T UBTF Missense_Mutation p.D10N 0.15 tolerated_low_confidence(0.31) benign(0.009) TCGA-IB-7651-01 17 42398522 42398522 G T SLC25A39 Missense_Mutation p.L199M 0.07 tolerated(0.18) benign(0.158) TCGA-IB-7651-01 17 42398537 42398537 C T SLC25A39 Missense_Mutation p.V194M 0.08 tolerated(0.14) benign(0.016) TCGA-IB-7651-01 17 42429421 42429421 G T GRN Missense_Mutation p.Q406H 0.17 tolerated(0.45) benign(0.008) TCGA-IB-7651-01 17 42429451 42429451 T C GRN Silent p.C416C 0.18 TCGA-IB-7651-01 17 42476826 42476826 G A GPATCH8 Silent p.S873S 0.18 TCGA-IB-7651-01 17 42635747 42635747 G A FZD2 Missense_Mutation p.D231N 0.17 tolerated_low_confidence(1) benign(0.001) TCGA-IB-7651-01 17 42800334 42800334 C A DBF4B Missense_Mutation p.L57M 0.18 deleterious(0) probably_damaging(0.979) TCGA-IB-7651-01 17 42824842 42824842 C T DBF4B Silent p.S341S 0.21 TCGA-IB-7651-01 17 42828513 42828513 C A DBF4B Silent p.S580S 0.17 TCGA-IB-7651-01 17 42882639 42882639 C A GJC1 Missense_Mutation p.A183S 0.15 tolerated(0.77) benign(0.001) TCGA-IB-7651-01 17 42928622 42928622 G T EFTUD2 3'UTR 0.13 TCGA-IB-7651-01 17 42932031 42932031 A G EFTUD2 Missense_Mutation p.F718L 0.12 tolerated(0.25) benign(0.162) TCGA-IB-7651-01 17 42953350 42953350 G T EFTUD2 Missense_Mutation p.A274D 0.17 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 17 42957999 42957999 A G EFTUD2 Missense_Mutation p.I181T 0.21 deleterious(0.04) benign(0.192) TCGA-IB-7651-01 17 42985496 42985496 G T GFAP 3'Flank 0.05 TCGA-IB-7651-01 17 42990750 42990750 C T GFAP Missense_Mutation p.E223K 0.20 deleterious(0) possibly_damaging(0.889) TCGA-IB-7651-01 17 42992761 42992761 C T GFAP Missense_Mutation p.G32S 0.12 tolerated(0.28) possibly_damaging(0.628) TCGA-IB-7651-01 17 43013546 43013546 C T KIF18B Missense_Mutation p.G56D 0.20 tolerated(0.18) benign(0.353) TCGA-IB-7651-01 17 43013726 43013726 C A KIF18B Intron 0.23 TCGA-IB-7651-01 17 43037413 43037413 G T C1QL1 3'UTR 0.26 TCGA-IB-7651-01 17 43181223 43181223 C T NMT1 Silent p.D437D 0.19 TCGA-IB-7651-01 17 43227267 43227267 G T HEXIM1 Missense_Mutation p.S237I 0.15 deleterious(0) probably_damaging(0.977) TCGA-IB-7651-01 17 43227649 43227649 T G HEXIM1 3'UTR 0.20 TCGA-IB-7651-01 17 43311026 43311026 A G FMNL1 Missense_Mutation p.E138G 0.16 deleterious(0) unknown(0) TCGA-IB-7651-01 17 43342620 43342620 G A SPATA32 5'Flank 0.15 TCGA-IB-7651-01 17 43482416 43482416 G A ARHGAP27 Silent p.D33D 0.19 TCGA-IB-7651-01 17 43507638 43507638 G T ARHGAP27 5'Flank 0.20 TCGA-IB-7651-01 17 43531235 43531235 G A PLEKHM1 Silent p.L661L 0.19 TCGA-IB-7651-01 17 4391336 4391336 C T SPNS3 3'UTR 0.23 TCGA-IB-7651-01 17 43923407 43923407 C T SPPL2C Silent p.L379L 0.19 TCGA-IB-7651-01 17 43923646 43923646 C T SPPL2C Silent p.Y458Y 0.17 TCGA-IB-7651-01 17 44051802 44051802 C T MAPT Missense_Mutation p.A91V 0.16 tolerated(0.33) possibly_damaging(0.687) TCGA-IB-7651-01 17 44060851 44060851 C A MAPT Silent p.S227S 0.14 TCGA-IB-7651-01 17 44076881 44076881 G A STH Missense_Mutation p.S79N 0.23 deleterious_low_confidence(0) benign(0.383) TCGA-IB-7651-01 17 44108915 44108915 G A KANSL1 Missense_Mutation p.S1082L 0.19 tolerated_low_confidence(0.16) benign(0.029) TCGA-IB-7651-01 17 44108967 44108967 G A KANSL1 Nonsense_Mutation p.R1065* 0.18 TCGA-IB-7651-01 17 44110540 44110540 C T KANSL1 Missense_Mutation p.A915T 0.25 tolerated(0.16) benign(0.052) TCGA-IB-7651-01 17 44143920 44143920 C T KANSL1 Missense_Mutation p.V611I 0.15 tolerated(0.48) benign(0.038) TCGA-IB-7651-01 17 44172013 44172013 G T KANSL1 Silent p.R448R 0.16 TCGA-IB-7651-01 17 44248620 44248620 C T KANSL1 Missense_Mutation p.R297H 0.22 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 4436305 4436305 G A SPNS2 Silent p.S323S 0.17 TCGA-IB-7651-01 17 4436361 4436361 G A SPNS2 Missense_Mutation p.R342H 0.16 tolerated(0.05) possibly_damaging(0.828) TCGA-IB-7651-01 17 4442054 4442054 A G SPNS2 3'UTR 0.18 TCGA-IB-7651-01 17 4442078 4442078 G A SPNS2 3'UTR 0.18 TCGA-IB-7651-01 17 4445963 4445963 C T MYBBP1A Missense_Mutation p.R989H 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 17 4449013 4449013 C T MYBBP1A Silent p.L655L 0.22 TCGA-IB-7651-01 17 4455562 4455562 C T MYBBP1A Missense_Mutation p.A255T 0.15 deleterious(0) possibly_damaging(0.843) TCGA-IB-7651-01 17 44845788 44845788 C T WNT3 Silent p.R322R 0.21 TCGA-IB-7651-01 17 4510942 4510942 T C SMTNL2 3'UTR 0.20 TCGA-IB-7651-01 17 45360742 45360742 G A ITGB3 Missense_Mutation p.R63H 0.18 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 17 45481348 45481348 G T EFCAB13 Nonsense_Mutation p.E708* 0.19 TCGA-IB-7651-01 17 45811195 45811195 C T TBX21 Silent p.Y125Y 0.24 TCGA-IB-7651-01 17 45886509 45886509 G T OSBPL7 Silent p.L701L 0.18 TCGA-IB-7651-01 17 45904115 45904115 G A MRPL10 Silent p.Y150Y 0.17 TCGA-IB-7651-01 17 45909502 45909502 G A LRRC46 Missense_Mutation p.C16Y 0.08 tolerated(0.09) benign(0.01) TCGA-IB-7651-01 17 45994216 45994216 C A SP2 Missense_Mutation p.A260D 0.17 deleterious(0.01) possibly_damaging(0.582) TCGA-IB-7651-01 17 46002805 46002805 C T SP2 Missense_Mutation p.R547C 0.18 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 17 46024046 46024046 C A PNPO Missense_Mutation p.D228E 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 46052879 46052879 G A CDK5RAP3 Splice_Site p.X172_splice 0.18 TCGA-IB-7651-01 17 46056230 46056230 A T CDK5RAP3 Missense_Mutation p.T342S 0.15 tolerated(0.7) benign(0.016) TCGA-IB-7651-01 17 46103709 46103709 G A COPZ2 3'UTR 0.19 TCGA-IB-7651-01 17 46106511 46106511 T C COPZ2 Missense_Mutation p.I174V 0.41 tolerated(1) benign(0.003) TCGA-IB-7651-01 17 46128755 46128755 G T NFE2L1 Missense_Mutation p.R92M 0.17 deleterious(0) probably_damaging(0.962) TCGA-IB-7651-01 17 46134725 46134725 G T NFE2L1 Missense_Mutation p.S278I 0.16 tolerated(0.07) benign(0.002) TCGA-IB-7651-01 17 46153428 46153428 G A CBX1 Missense_Mutation p.R85C 0.22 deleterious(0) probably_damaging(0.915) TCGA-IB-7651-01 17 46154252 46154252 G A CBX1 Missense_Mutation p.L39F 0.17 tolerated(1) benign(0.07) TCGA-IB-7651-01 17 4619793 4619793 G A ARRB2 Missense_Mutation p.A83T 0.21 tolerated(0.15) probably_damaging(0.996) TCGA-IB-7651-01 17 4621244 4621244 C T ARRB2 Missense_Mutation p.P204S 0.12 deleterious(0.01) possibly_damaging(0.676) TCGA-IB-7651-01 17 46607055 46607055 G A HOXB1 Nonsense_Mutation p.R254* 0.19 TCGA-IB-7651-01 17 46607804 46607804 C T HOXB1 Missense_Mutation p.A155T 0.18 tolerated(1) benign(0.002) TCGA-IB-7651-01 17 46628044 46628044 G A HOXB3 Silent p.G316G 0.19 TCGA-IB-7651-01 17 46628302 46628302 C T HOXB3 Silent p.R230R 0.17 TCGA-IB-7651-01 17 46628304 46628304 G A HOXB3 Missense_Mutation p.R230W 0.08 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 46629754 46629754 C A HOXB3 Missense_Mutation p.G28V 0.15 deleterious(0) benign(0.327) TCGA-IB-7651-01 17 46670671 46670671 C T HOXB5 Missense_Mutation p.S125N 0.20 tolerated(0.47) benign(0.056) TCGA-IB-7651-01 17 46685370 46685370 G A HOXB7 Missense_Mutation p.T163M 0.08 deleterious(0.03) possibly_damaging(0.634) TCGA-IB-7651-01 17 46691677 46691677 C T HOXB8 Silent p.S130S 0.18 TCGA-IB-7651-01 17 46691781 46691781 G T HOXB8 Missense_Mutation p.L96I 0.17 tolerated(0.43) benign(0.059) TCGA-IB-7651-01 17 46703204 46703204 C A HOXB9 Missense_Mutation p.G143V 0.18 tolerated(0.19) benign(0.167) TCGA-IB-7651-01 17 46868909 46868909 A G TTLL6 Missense_Mutation p.I352T 0.22 deleterious(0) possibly_damaging(0.541) TCGA-IB-7651-01 17 4689283 4689283 G A VMO1 Missense_Mutation p.A87V 0.12 tolerated(0.23) benign(0.007) TCGA-IB-7651-01 17 47075176 47075176 G A IGF2BP1 Silent p.A23A 0.22 TCGA-IB-7651-01 17 47115652 47115652 G A IGF2BP1 Missense_Mutation p.G175D 0.20 tolerated(0.09) benign(0.062) TCGA-IB-7651-01 17 47115672 47115672 C T IGF2BP1 Missense_Mutation p.P182S 0.19 tolerated(0.17) benign(0.126) TCGA-IB-7651-01 17 47123649 47123649 G A IGF2BP1 Missense_Mutation p.A519T 0.15 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 17 47126761 47126761 G T IGF2BP1 Missense_Mutation p.Q563H 0.09 tolerated(0.13) benign(0.013) TCGA-IB-7651-01 17 4712837 4712837 G A PLD2 Missense_Mutation p.R202H 0.07 tolerated(0.17) benign(0.003) TCGA-IB-7651-01 17 4720350 4720350 G A PLD2 Silent p.K567K 0.20 TCGA-IB-7651-01 17 4725101 4725101 G A PLD2 Missense_Mutation p.A826T 0.18 tolerated(0.28) benign(0.01) TCGA-IB-7651-01 17 47376251 47376251 T G ZNF652 Missense_Mutation p.S449R 0.22 tolerated(0.07) benign(0.019) TCGA-IB-7651-01 17 47394317 47394317 G A ZNF652 Silent p.R257R 0.20 TCGA-IB-7651-01 17 47394342 47394342 T G ZNF652 Missense_Mutation p.K249T 0.09 tolerated(0.05) probably_damaging(0.998) TCGA-IB-7651-01 17 47486797 47486797 G A PHB Missense_Mutation p.R97W 0.16 tolerated(0.07) benign(0.01) TCGA-IB-7651-01 17 47590307 47590307 G A NGFR Missense_Mutation p.R407H 0.15 deleterious(0.01) probably_damaging(0.954) TCGA-IB-7651-01 17 47875874 47875874 C T KAT7 Silent p.S178S 0.17 TCGA-IB-7651-01 17 4796848 4796848 C T MINK1 Silent p.G840G 0.22 TCGA-IB-7651-01 17 4798398 4798398 C T MINK1 Silent p.L982L 0.17 TCGA-IB-7651-01 17 4800709 4800709 C T MINK1 3'UTR 0.14 TCGA-IB-7651-01 17 4804099 4804099 C T CHRNE Silent p.P302P 0.19 TCGA-IB-7651-01 17 48158697 48158697 C A ITGA3 Silent p.V948V 0.14 TCGA-IB-7651-01 17 48172856 48172856 C T PDK2 Silent p.Y19Y 0.21 TCGA-IB-7651-01 17 48185696 48185696 C T PDK2 Missense_Mutation p.A259V 0.23 deleterious(0) probably_damaging(0.956) TCGA-IB-7651-01 17 48187434 48187434 G T PDK2 Missense_Mutation p.K399N 0.16 deleterious(0.03) possibly_damaging(0.688) TCGA-IB-7651-01 17 48193388 48193388 C T SAMD14 Missense_Mutation p.R189H 0.17 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 17 48216883 48216883 C T PPP1R9B Missense_Mutation p.A642T 0.20 deleterious(0) possibly_damaging(0.647) TCGA-IB-7651-01 17 48218701 48218701 T G PPP1R9B Missense_Mutation p.T553P 0.24 deleterious(0.02) possibly_damaging(0.825) TCGA-IB-7651-01 17 48252742 48252742 C T SGCA Missense_Mutation p.R370W 0.19 tolerated(0.08) possibly_damaging(0.883) TCGA-IB-7651-01 17 48263816 48263816 G A COL1A1 Silent p.V1289V 0.21 TCGA-IB-7651-01 17 48264896 48264896 G T COL1A1 Silent p.G1124G 0.17 TCGA-IB-7651-01 17 4841116 4841116 G A SLC25A11 Silent p.L289L 0.19 TCGA-IB-7651-01 17 48434506 48434506 C T XYLT2 Missense_Mutation p.P612S 0.17 tolerated(0.38) benign(0.002) TCGA-IB-7651-01 17 48437340 48437340 C T XYLT2 Silent p.S762S 0.17 TCGA-IB-7651-01 17 48474609 48474609 G T LRRC59 Missense_Mutation p.L24I 0.17 deleterious(0.01) probably_damaging(0.96) TCGA-IB-7651-01 17 48539874 48539874 G T ACSF2 Missense_Mutation p.Q240H 0.17 tolerated(0.21) probably_damaging(0.934) TCGA-IB-7651-01 17 48545740 48545740 C T CHAD Silent p.P145P 0.16 TCGA-IB-7651-01 17 48546111 48546111 C T CHAD Missense_Mutation p.A22T 0.24 tolerated(0.3) possibly_damaging(0.798) TCGA-IB-7651-01 17 48614080 48614080 G A EPN3 Missense_Mutation p.E55K 0.15 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 17 48618173 48618173 G A EPN3 Silent p.E333E 0.16 TCGA-IB-7651-01 17 48676891 48676891 C T CACNA1G Missense_Mutation p.R1121W 0.16 deleterious(0) benign(0.02) TCGA-IB-7651-01 17 48677208 48677208 C T CACNA1G Silent p.D1226D 0.11 TCGA-IB-7651-01 17 48692758 48692758 G A CACNA1G Missense_Mutation p.R1599H 0.22 tolerated(0.14) benign(0.005) TCGA-IB-7651-01 17 48701746 48701746 G T CACNA1G Missense_Mutation p.Q2085H 0.13 deleterious(0.03) benign(0.157) TCGA-IB-7651-01 17 48703937 48703937 G A CACNA1G Missense_Mutation p.G2320D 0.16 tolerated_low_confidence(0.06) possibly_damaging(0.833) TCGA-IB-7651-01 17 48733272 48733272 G A ABCC3 Missense_Mutation p.C42Y 0.18 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 17 48746712 48746712 G T ABCC3 Splice_Site p.X689_splice 0.17 TCGA-IB-7651-01 17 4876933 4876933 G A CAMTA2 Silent p.H739H 0.18 TCGA-IB-7651-01 17 4877048 4877048 G T CAMTA2 Missense_Mutation p.P701H 0.21 deleterious(0.01) probably_damaging(0.928) TCGA-IB-7651-01 17 4883865 4883865 G T CAMTA2 Missense_Mutation p.S274Y 0.16 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 17 48917794 48917794 C T WFIKKN2 Missense_Mutation p.P382L 0.14 tolerated(0.38) benign(0.001) TCGA-IB-7651-01 17 48918254 48918254 C T WFIKKN2 Silent p.G535G 0.18 TCGA-IB-7651-01 17 4893489 4893489 C T INCA1 Missense_Mutation p.R39H 0.20 tolerated(0.66) benign(0.425) TCGA-IB-7651-01 17 4905925 4905925 G A KIF1C Missense_Mutation p.G199E 0.09 deleterious(0) possibly_damaging(0.755) TCGA-IB-7651-01 17 49064500 49064500 G A SPAG9 Missense_Mutation p.T971I 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 49075897 49075897 C T SPAG9 Silent p.T582T 0.19 TCGA-IB-7651-01 17 49239138 49239138 G A NME1 Missense_Mutation p.G156S 0.16 tolerated(0.93) benign(0.007) TCGA-IB-7651-01 17 49244308 49244308 G A NME1-NME2 Silent p.K154K 0.14 TCGA-IB-7651-01 17 49272664 49272664 G T MBTD1 Missense_Mutation p.S428Y 0.08 deleterious(0.01) possibly_damaging(0.889) TCGA-IB-7651-01 17 4936291 4936291 A G SLC52A1 Silent p.F436F 0.22 TCGA-IB-7651-01 17 4936666 4936666 G T SLC52A1 Missense_Mutation p.L342M 0.17 tolerated(0.29) probably_damaging(1) TCGA-IB-7651-01 17 4937215 4937215 C T SLC52A1 Missense_Mutation p.R190H 0.14 tolerated(0.18) benign(0.002) TCGA-IB-7651-01 17 4996027 4996027 G A ZFP3 Missense_Mutation p.V410I 0.06 tolerated(0.54) benign(0.011) TCGA-IB-7651-01 17 5040979 5040979 G A USP6 Missense_Mutation p.V287M 0.16 deleterious_low_confidence(0) possibly_damaging(0.867) TCGA-IB-7651-01 17 5042848 5042848 G A USP6 Silent p.T459T 0.15 TCGA-IB-7651-01 17 5042898 5042898 G A USP6 Missense_Mutation p.S476N 0.20 deleterious_low_confidence(0) benign(0.213) TCGA-IB-7651-01 17 51900373 51900373 C A KIF2B 5'UTR 0.20 TCGA-IB-7651-01 17 51900714 51900714 G T KIF2B Missense_Mutation p.R107M 0.18 tolerated(0.12) benign(0.371) TCGA-IB-7651-01 17 51900974 51900974 T G KIF2B Missense_Mutation p.Y194D 0.18 deleterious(0) possibly_damaging(0.478) TCGA-IB-7651-01 17 51901392 51901392 C T KIF2B Missense_Mutation p.A333V 0.18 deleterious(0.02) possibly_damaging(0.467) TCGA-IB-7651-01 17 51901512 51901512 A T KIF2B Missense_Mutation p.K373M 0.16 deleterious(0.03) probably_damaging(0.963) TCGA-IB-7651-01 17 5268464 5268464 G A RABEP1 Silent p.E572E 0.19 TCGA-IB-7651-01 17 5280417 5280417 C T RABEP1 Missense_Mutation p.R678W 0.20 deleterious(0) probably_damaging(0.932) TCGA-IB-7651-01 17 5284791 5284791 G A RABEP1 Silent p.Q826Q 0.16 TCGA-IB-7651-01 17 53027406 53027406 C T TOM1L1 Missense_Mutation p.A430V 0.15 tolerated(0.13) benign(0.004) TCGA-IB-7651-01 17 5302881 5302881 G T NUP88 Missense_Mutation p.L428I 0.22 tolerated(0.22) possibly_damaging(0.627) TCGA-IB-7651-01 17 53063550 53063550 C T STXBP4 5'UTR 0.12 TCGA-IB-7651-01 17 531366 531366 G T VPS53 Missense_Mutation p.L265M 0.23 deleterious(0) probably_damaging(0.98) TCGA-IB-7651-01 17 5323023 5323023 G T RPAIN 5'Flank 0.24 TCGA-IB-7651-01 17 5336648 5336648 T C C1QBP Missense_Mutation p.T222A 0.19 deleterious(0.02) benign(0.076) TCGA-IB-7651-01 17 53848535 53848535 T C PCTP Missense_Mutation p.S110P 0.16 tolerated(0.08) benign(0.125) TCGA-IB-7651-01 17 54520268 54520268 C T ANKFN1 Missense_Mutation p.T361M 0.06 deleterious(0) possibly_damaging(0.475) TCGA-IB-7651-01 17 54554920 54554920 C A ANKFN1 Silent p.L618L 0.21 TCGA-IB-7651-01 17 5456838 5456838 A C NLRP1 Missense_Mutation p.I799S 0.16 tolerated(0.05) benign(0.109) TCGA-IB-7651-01 17 54893177 54893177 C A C17orf67 5'UTR 0.20 TCGA-IB-7651-01 17 54925319 54925319 C T DGKE Silent p.L261L 0.05 TCGA-IB-7651-01 17 54939214 54939214 C T DGKE Silent p.I449I 0.19 TCGA-IB-7651-01 17 55335665 55335665 A G MSI2 Missense_Mutation p.S74G 0.17 tolerated(0.45) benign(0.03) TCGA-IB-7651-01 17 55917297 55917297 C A MRPS23 Splice_Site p.X141_splice 0.16 TCGA-IB-7651-01 17 56247439 56247439 G T OR4D2 Missense_Mutation p.W141C 0.19 tolerated(1) benign(0) TCGA-IB-7651-01 17 56247902 56247902 G T OR4D2 Missense_Mutation p.A296S 0.05 tolerated(1) benign(0.019) TCGA-IB-7651-01 17 56270749 56270749 G A EPX Missense_Mutation p.R63H 0.13 tolerated(0.11) benign(0.006) TCGA-IB-7651-01 17 56271324 56271324 G A EPX Silent p.K155K 0.18 TCGA-IB-7651-01 17 56274612 56274612 C A EPX Missense_Mutation p.L372M 0.12 deleterious(0.02) probably_damaging(0.974) TCGA-IB-7651-01 17 56276417 56276417 G A EPX Silent p.T379T 0.19 TCGA-IB-7651-01 17 56281654 56281654 G A EPX Missense_Mutation p.R673Q 0.17 deleterious(0.01) possibly_damaging(0.796) TCGA-IB-7651-01 17 56283391 56283391 G T MKS1 3'UTR 0.23 TCGA-IB-7651-01 17 56292170 56292170 G A MKS1 Silent p.S149S 0.11 TCGA-IB-7651-01 17 56326965 56326965 C T LPO Missense_Mutation p.A161V 0.18 tolerated(0.25) benign(0.31) TCGA-IB-7651-01 17 56326984 56326984 G T LPO Missense_Mutation p.E167D 0.17 deleterious(0.03) possibly_damaging(0.5) TCGA-IB-7651-01 17 56342265 56342265 G T LPO Missense_Mutation p.Q483H 0.24 deleterious(0) possibly_damaging(0.716) TCGA-IB-7651-01 17 56343534 56343534 C T LPO Missense_Mutation p.R514W 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 56355451 56355451 C T MPO Missense_Mutation p.R314H 0.17 deleterious(0.01) possibly_damaging(0.633) TCGA-IB-7651-01 17 56356920 56356920 T C MPO Missense_Mutation p.D171G 0.18 tolerated(0.13) benign(0.009) TCGA-IB-7651-01 17 56386380 56386380 C T BZRAP1 Missense_Mutation p.R1418H 0.20 deleterious(0.03) benign(0.052) TCGA-IB-7651-01 17 56387922 56387922 T C BZRAP1 Missense_Mutation p.E1217G 0.17 deleterious(0.01) possibly_damaging(0.603) TCGA-IB-7651-01 17 56389920 56389920 G A BZRAP1 Silent p.S754S 0.18 TCGA-IB-7651-01 17 56435680 56435680 C A RNF43 Missense_Mutation p.S486I 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 17 56440681 56440681 G A RNF43 Silent p.N179N 0.19 TCGA-IB-7651-01 17 56557601 56557601 C T HSF5 Missense_Mutation p.R193Q 0.20 tolerated(0.53) probably_damaging(0.929) TCGA-IB-7651-01 17 56565462 56565462 G A HSF5 Silent p.G58G 0.18 TCGA-IB-7651-01 17 56569901 56569901 G T MTMR4 Missense_Mutation p.F1127L 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 17 56572543 56572543 G A MTMR4 Missense_Mutation p.P987L 0.19 tolerated(0.75) benign(0.002) TCGA-IB-7651-01 17 56584573 56584573 G T MTMR4 Missense_Mutation p.A258D 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 56586165 56586165 G T MTMR4 Missense_Mutation p.L111I 0.24 deleterious(0.02) benign(0.299) TCGA-IB-7651-01 17 56598178 56598178 C T SEPT4 Missense_Mutation p.D450N 0.04 tolerated(0.06) probably_damaging(0.969) TCGA-IB-7651-01 17 56599357 56599357 G A SEPT4 Silent p.C271C 0.17 TCGA-IB-7651-01 17 56651552 56651552 C A TEX14 Missense_Mutation p.D1173Y 0.17 deleterious(0.02) probably_damaging(0.977) TCGA-IB-7651-01 17 56679270 56679270 C T TEX14 Silent p.V531V 0.14 TCGA-IB-7651-01 17 56772420 56772420 G A RAD51C Missense_Mutation p.E92K 0.22 tolerated(0.33) benign(0.017) TCGA-IB-7651-01 17 56811478 56811478 G T RAD51C Splice_Site p.X343_splice 0.14 TCGA-IB-7651-01 17 56811642 56811642 A C RAD51C 3'UTR 0.14 TCGA-IB-7651-01 17 56833506 56833506 G A PPM1E Missense_Mutation p.E50K 0.21 deleterious_low_confidence(0) unknown(0) TCGA-IB-7651-01 17 57089767 57089767 T G TRIM37 Missense_Mutation p.T873P 0.22 tolerated_low_confidence(0.13) benign(0) TCGA-IB-7651-01 17 57165749 57165749 C T TRIM37 Missense_Mutation p.E62K 0.08 tolerated(0.06) possibly_damaging(0.776) TCGA-IB-7651-01 17 57288100 57288100 C A SMG8 Missense_Mutation p.L230M 0.06 tolerated(0.17) possibly_damaging(0.575) TCGA-IB-7651-01 17 57651186 57651186 C T DHX40 Missense_Mutation p.A211V 0.16 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 17 57741290 57741290 A G CLTC Missense_Mutation p.N486D 0.20 tolerated(0.58) benign(0.09) TCGA-IB-7651-01 17 57758684 57758684 G A CLTC Missense_Mutation p.A1032T 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 57917196 57917196 C T VMP1 Missense_Mutation p.S382F 0.20 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 17 57963577 57963577 C T TUBD1 Missense_Mutation p.A63T 0.09 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 17 58033915 58033915 C A RNFT1 Splice_Site p.X336_splice 0.14 TCGA-IB-7651-01 17 58259106 58259106 G T USP32 Missense_Mutation p.S1376Y 0.17 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-IB-7651-01 17 58260584 58260584 G A USP32 Silent p.D1355D 0.18 TCGA-IB-7651-01 17 58262867 58262867 C T USP32 Missense_Mutation p.C1263Y 0.17 tolerated(0.06) probably_damaging(0.991) TCGA-IB-7651-01 17 58286188 58286188 G A USP32 Missense_Mutation p.A867V 0.14 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 17 58286802 58286802 G A USP32 Nonsense_Mutation p.R843* 0.17 TCGA-IB-7651-01 17 58422960 58422960 A G USP32 Missense_Mutation p.V23A 0.17 tolerated(0.79) benign(0.028) TCGA-IB-7651-01 17 58506770 58506770 C T C17orf64 Silent p.D159D 0.21 TCGA-IB-7651-01 17 59112065 59112065 C T BCAS3 Missense_Mutation p.S574L 0.22 tolerated(0.1) probably_damaging(0.917) TCGA-IB-7651-01 17 59560702 59560702 G A TBX4 Missense_Mutation p.S488N 0.19 tolerated_low_confidence(0.11) benign(0.031) TCGA-IB-7651-01 17 59667802 59667802 G A NACA2 3'UTR 0.19 TCGA-IB-7651-01 17 59668386 59668386 C T NACA2 Nonsense_Mutation p.W52* 0.19 TCGA-IB-7651-01 17 59760907 59760907 G A BRIP1 Missense_Mutation p.A1167V 0.18 tolerated_low_confidence(0.14) benign(0.039) TCGA-IB-7651-01 17 5991326 5991326 C A WSCD1 Nonsense_Mutation p.C148* 0.04 TCGA-IB-7651-01 17 60005172 60005172 A G INTS2 Intron 0.18 TCGA-IB-7651-01 17 60028352 60028352 C T MED13 Missense_Mutation p.S2042N 0.17 tolerated(0.43) benign(0.006) TCGA-IB-7651-01 17 60042453 60042453 C T MED13 Silent p.G1586G 0.20 TCGA-IB-7651-01 17 60062374 60062374 C T MED13 Silent p.P821P 0.16 TCGA-IB-7651-01 17 60342305 60342305 C T TBC1D3P2 3'Flank 0.07 TCGA-IB-7651-01 17 60342638 60342638 C T TBC1D3P2 RNA 0.10 TCGA-IB-7651-01 17 60484019 60484019 C A EFCAB3 Missense_Mutation p.L275I 0.17 deleterious(0.01) probably_damaging(0.928) TCGA-IB-7651-01 17 60503706 60503706 A C METTL2A Missense_Mutation p.K83N 0.18 tolerated(0.09) benign(0.103) TCGA-IB-7651-01 17 60504005 60504005 G A METTL2A Missense_Mutation p.R183Q 0.18 deleterious(0) possibly_damaging(0.657) TCGA-IB-7651-01 17 60518112 60518112 A G METTL2A Silent p.P268P 0.17 TCGA-IB-7651-01 17 60522267 60522267 C T METTL2A Silent p.Y293Y 0.16 TCGA-IB-7651-01 17 60526122 60526122 A G METTL2A 3'UTR 0.18 TCGA-IB-7651-01 17 60642396 60642396 G T TLK2 Missense_Mutation p.S289I 0.17 tolerated(0.5) benign(0.43) TCGA-IB-7651-01 17 60685440 60685440 A G TLK2 Silent p.Q670Q 0.19 TCGA-IB-7651-01 17 60685485 60685485 G A TLK2 Silent p.K685K 0.15 TCGA-IB-7651-01 17 60744886 60744886 C T MRC2 Missense_Mutation p.T370I 0.10 tolerated(0.4) benign(0) TCGA-IB-7651-01 17 60757183 60757183 G A MRC2 Missense_Mutation p.E740K 0.24 deleterious(0) possibly_damaging(0.713) TCGA-IB-7651-01 17 60767314 60767314 C T MRC2 Silent p.D1211D 0.23 TCGA-IB-7651-01 17 60779010 60779010 G A MARCH10 3'UTR 0.20 TCGA-IB-7651-01 17 60814645 60814645 C A MARCH10 Missense_Mutation p.R195M 0.18 deleterious(0) possibly_damaging(0.905) TCGA-IB-7651-01 17 61417467 61417467 T G TANC2 Silent p.V453V 0.08 TCGA-IB-7651-01 17 61473130 61473130 G T TANC2 Missense_Mutation p.Q952H 0.09 deleterious(0.02) possibly_damaging(0.688) TCGA-IB-7651-01 17 61497715 61497715 T A TANC2 Missense_Mutation p.S1458T 0.19 tolerated_low_confidence(0.07) benign(0.138) TCGA-IB-7651-01 17 61499068 61499068 G A TANC2 Missense_Mutation p.A1909T 0.20 tolerated_low_confidence(0.07) possibly_damaging(0.696) TCGA-IB-7651-01 17 61560026 61560026 C A ACE Missense_Mutation p.L440M 0.05 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 17 61611263 61611263 C T KCNH6 Missense_Mutation p.A231V 0.18 deleterious(0) possibly_damaging(0.815) TCGA-IB-7651-01 17 61613124 61613124 C T KCNH6 Missense_Mutation p.A399V 0.20 tolerated(0.06) probably_damaging(1) TCGA-IB-7651-01 17 61613207 61613207 C T KCNH6 Missense_Mutation p.R427W 0.08 deleterious(0) probably_damaging(0.985) TCGA-IB-7651-01 17 61781025 61781025 G A STRADA Silent p.D410D 0.16 TCGA-IB-7651-01 17 61781939 61781939 G A STRADA Silent p.L288L 0.19 TCGA-IB-7651-01 17 61838630 61838630 G A CCDC47 Missense_Mutation p.S210F 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 61890627 61890627 A C DDX42 Missense_Mutation p.N572T 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 17 61902919 61902919 C A FTSJ3 Missense_Mutation p.W126L 0.15 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 17 61903629 61903629 C A FTSJ3 Missense_Mutation p.S70I 0.19 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 17 61910711 61910711 C T SMARCD2 Missense_Mutation p.D463N 0.16 tolerated(0.47) benign(0.001) TCGA-IB-7651-01 17 61910761 61910761 G A SMARCD2 Missense_Mutation p.S446F 0.19 deleterious(0) benign(0.057) TCGA-IB-7651-01 17 61988202 61988202 G T CSHL1 Silent p.P31P 0.15 TCGA-IB-7651-01 17 62006530 62006530 C T CD79B 3'UTR 0.07 TCGA-IB-7651-01 17 62007651 62007651 G A CD79B Silent p.S72S 0.14 TCGA-IB-7651-01 17 62021184 62021184 C T SCN4A Silent p.T1313T 0.18 TCGA-IB-7651-01 17 62021185 62021185 G A SCN4A Missense_Mutation p.T1313M 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 17 62026114 62026114 G A SCN4A Missense_Mutation p.R1001C 0.17 tolerated(0.3) probably_damaging(0.993) TCGA-IB-7651-01 17 62045589 62045589 C A SCN4A Missense_Mutation p.R277M 0.21 deleterious(0) probably_damaging(0.917) TCGA-IB-7651-01 17 62080179 62080179 C T ICAM2 Silent p.L252L 0.16 TCGA-IB-7651-01 17 62082714 62082714 G A ICAM2 Silent p.F27F 0.17 TCGA-IB-7651-01 17 62125340 62125340 C T ERN1 Missense_Mutation p.V803I 0.18 tolerated(0.55) benign(0.002) TCGA-IB-7651-01 17 62130142 62130142 G A ERN1 Missense_Mutation p.P751S 0.16 deleterious(0.02) benign(0.166) TCGA-IB-7651-01 17 62135346 62135346 T C ERN1 Missense_Mutation p.N405S 0.31 tolerated(1) benign(0.014) TCGA-IB-7651-01 17 62223484 62223484 A G TEX2 3'Flank 0.21 TCGA-IB-7651-01 17 62265718 62265718 C T TEX2 Missense_Mutation p.R752H 0.18 deleterious(0.03) benign(0.048) TCGA-IB-7651-01 17 62290017 62290017 C T TEX2 Missense_Mutation p.A521T 0.21 tolerated(0.58) benign(0.012) TCGA-IB-7651-01 17 62290429 62290429 T G TEX2 Missense_Mutation p.K383N 0.17 tolerated(0.13) benign(0.018) TCGA-IB-7651-01 17 62496398 62496398 T G DDX5 Missense_Mutation p.R496S 0.20 tolerated(0.1) benign(0.328) TCGA-IB-7651-01 17 62499117 62499117 C A DDX5 Missense_Mutation p.A304S 0.19 tolerated(1) benign(0.042) TCGA-IB-7651-01 17 62518874 62518874 T C CEP95 Missense_Mutation p.I257T 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 17 62530763 62530763 C T CEP95 Nonsense_Mutation p.R660* 0.16 TCGA-IB-7651-01 17 62530843 62530843 C T CEP95 Silent p.T686T 0.18 TCGA-IB-7651-01 17 62796142 62796142 C T PLEKHM1P RNA 0.28 TCGA-IB-7651-01 17 62856945 62856945 G A LRRC37A3 Nonsense_Mutation p.Q1107* 0.16 TCGA-IB-7651-01 17 63010504 63010504 C T GNA13 Silent p.R335R 0.11 TCGA-IB-7651-01 17 63204111 63204111 A C RGS9 Missense_Mutation p.E425D 0.19 deleterious(0.02) benign(0.089) TCGA-IB-7651-01 17 6337274 6337274 C T AIPL1 Missense_Mutation p.V81M 0.14 tolerated(0.08) possibly_damaging(0.707) TCGA-IB-7651-01 17 6348719 6348719 T C FAM64A Missense_Mutation p.S97P 0.18 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 17 63533929 63533929 G T AXIN2 Missense_Mutation p.L409I 0.17 tolerated(0.55) benign(0.003) TCGA-IB-7651-01 17 63534290 63534290 G A AXIN2 Intron 0.14 TCGA-IB-7651-01 17 6353743 6353743 G T FAM64A 3'UTR 0.23 TCGA-IB-7651-01 17 6364709 6364709 C T PITPNM3 Missense_Mutation p.R825H 0.20 deleterious(0.02) probably_damaging(0.967) TCGA-IB-7651-01 17 63652 63652 G A RPH3AL Silent p.C313C 0.14 TCGA-IB-7651-01 17 6376098 6376098 G A PITPNM3 Silent p.C436C 0.20 TCGA-IB-7651-01 17 6387061 6387061 C T PITPNM3 Silent p.P121P 0.20 TCGA-IB-7651-01 17 64092721 64092721 C A CEP112 Missense_Mutation p.K224N 0.21 deleterious(0.03) possibly_damaging(0.522) TCGA-IB-7651-01 17 64171175 64171175 T C CEP112 Missense_Mutation p.T153A 0.16 tolerated(0.62) benign(0.002) TCGA-IB-7651-01 17 64216739 64216739 C T APOH Silent p.A179A 0.17 TCGA-IB-7651-01 17 64222213 64222213 C T APOH Missense_Mutation p.E91K 0.16 tolerated(0.16) benign(0.427) TCGA-IB-7651-01 17 644642 644642 C T FAM57A Silent p.S202S 0.21 TCGA-IB-7651-01 17 648153 648153 G A GEMIN4 Missense_Mutation p.P1044S 0.08 tolerated(0.55) probably_damaging(0.977) TCGA-IB-7651-01 17 64873379 64873379 C T CACNG5 5'UTR 0.12 TCGA-IB-7651-01 17 64881064 64881064 G A CACNG5 Intron 0.17 TCGA-IB-7651-01 17 64881352 64881352 T C CACNG5 Missense_Mutation p.C275R 0.16 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-IB-7651-01 17 650235 650235 C T GEMIN4 Missense_Mutation p.D350N 0.18 tolerated(0.06) benign(0.012) TCGA-IB-7651-01 17 65026808 65026808 G A CACNG4 Silent p.A224A 0.16 TCGA-IB-7651-01 17 65051341 65051341 T G CACNG1 Missense_Mutation p.F143V 0.06 tolerated(0.17) possibly_damaging(0.779) TCGA-IB-7651-01 17 650531 650531 G A GEMIN4 Missense_Mutation p.A251V 0.19 tolerated(0.43) probably_damaging(0.988) TCGA-IB-7651-01 17 65083046 65083046 A C HELZ Missense_Mutation p.F1798C 0.18 deleterious_low_confidence(0) unknown(0) TCGA-IB-7651-01 17 65144688 65144688 A G HELZ Missense_Mutation p.I873T 0.08 deleterious(0) probably_damaging(0.964) TCGA-IB-7651-01 17 65162603 65162603 C T HELZ Missense_Mutation p.S629N 0.18 tolerated(0.08) benign(0.05) TCGA-IB-7651-01 17 65337095 65337095 A G PSMD12 Missense_Mutation p.I412T 0.17 deleterious(0.03) possibly_damaging(0.697) TCGA-IB-7651-01 17 6544417 6544417 G T TXNDC17 Missense_Mutation p.E5D 0.19 deleterious(0.04) benign(0.003) TCGA-IB-7651-01 17 6547942 6547942 A G MED31 Missense_Mutation p.Y81H 0.21 tolerated(0.43) benign(0.029) TCGA-IB-7651-01 17 65671660 65671660 T C PITPNC1 Splice_Site p.X228_splice 0.18 TCGA-IB-7651-01 17 65862587 65862587 G T BPTF Missense_Mutation p.D482Y 0.16 possibly_damaging(0.684) TCGA-IB-7651-01 17 65862593 65862593 G A BPTF Missense_Mutation p.E484K 0.16 possibly_damaging(0.57) TCGA-IB-7651-01 17 65905755 65905755 G A BPTF Missense_Mutation p.S957N 0.18 possibly_damaging(0.883) TCGA-IB-7651-01 17 65907902 65907902 G A BPTF Missense_Mutation p.S1301N 0.12 benign(0.219) TCGA-IB-7651-01 17 65924474 65924474 C T BPTF Nonsense_Mutation p.R1919* 0.15 TCGA-IB-7651-01 17 65971920 65971920 C T BPTF Nonsense_Mutation p.R2858* 0.15 TCGA-IB-7651-01 17 6597450 6597450 C A SLC13A5 Missense_Mutation p.K374N 0.11 tolerated(0.3) benign(0.098) TCGA-IB-7651-01 17 66339816 66339816 G A ARSG Missense_Mutation p.G97D 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 17 66425048 66425048 G A WIPI1 Missense_Mutation p.A332V 0.12 tolerated(0.05) benign(0.007) TCGA-IB-7651-01 17 66520194 66520194 G A PRKAR1A Missense_Mutation p.A160T 0.14 tolerated(0.07) benign(0.065) TCGA-IB-7651-01 17 66533665 66533665 C A FAM20A Missense_Mutation p.V527L 0.30 tolerated(0.27) benign(0.001) TCGA-IB-7651-01 17 66535523 66535523 G T FAM20A Missense_Mutation p.S439Y 0.13 deleterious(0) probably_damaging(0.981) TCGA-IB-7651-01 17 66538300 66538300 T C FAM20A Missense_Mutation p.N312S 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 17 66596565 66596565 A G FAM20A Silent p.A81A 0.11 TCGA-IB-7651-01 17 66864494 66864494 T G ABCA8 Missense_Mutation p.K1532T 0.19 deleterious(0) probably_damaging(0.963) TCGA-IB-7651-01 17 66891152 66891152 C T ABCA8 Missense_Mutation p.A883T 0.15 tolerated(0.17) benign(0.113) TCGA-IB-7651-01 17 66903959 66903959 G T ABCA8 Missense_Mutation p.P694T 0.22 deleterious(0) possibly_damaging(0.502) TCGA-IB-7651-01 17 66914273 66914273 T C ABCA8 Silent p.Q614Q 0.18 TCGA-IB-7651-01 17 66925243 66925243 C T ABCA8 Missense_Mutation p.E358K 0.18 tolerated(0.16) possibly_damaging(0.639) TCGA-IB-7651-01 17 66925263 66925263 C A ABCA8 Missense_Mutation p.R351I 0.11 deleterious(0) possibly_damaging(0.836) TCGA-IB-7651-01 17 66928609 66928609 C T ABCA8 Missense_Mutation p.G206E 0.08 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 17 66978725 66978725 C A ABCA9 Missense_Mutation p.Q1566H 0.17 deleterious(0.02) benign(0.114) TCGA-IB-7651-01 17 66981212 66981212 T C ABCA9 Silent p.S1422S 0.19 TCGA-IB-7651-01 17 66987055 66987055 G A ABCA9 Missense_Mutation p.P1254S 0.17 tolerated(0.07) benign(0.285) TCGA-IB-7651-01 17 66989177 66989177 C T ABCA9 Missense_Mutation p.V1202I 0.16 tolerated(0.75) benign(0.005) TCGA-IB-7651-01 17 67004260 67004260 C T ABCA9 Missense_Mutation p.M1088I 0.07 tolerated(0.78) benign(0.006) TCGA-IB-7651-01 17 67012395 67012395 T C ABCA9 Missense_Mutation p.E1013G 0.10 tolerated(0.33) benign(0.008) TCGA-IB-7651-01 17 67020491 67020491 C T ABCA9 Silent p.L715L 0.12 TCGA-IB-7651-01 17 67022579 67022579 G T ABCA9 Missense_Mutation p.L694M 0.19 deleterious(0) probably_damaging(0.967) TCGA-IB-7651-01 17 67029942 67029942 C T ABCA9 Missense_Mutation p.A401T 0.10 deleterious(0.02) possibly_damaging(0.457) TCGA-IB-7651-01 17 6704113 6704113 T G TEKT1 Missense_Mutation p.Q334H 0.18 tolerated(0.06) possibly_damaging(0.464) TCGA-IB-7651-01 17 67109448 67109448 T G ABCA6 Missense_Mutation p.Q652H 0.21 tolerated(0.41) possibly_damaging(0.832) TCGA-IB-7651-01 17 67111029 67111029 C A ABCA6 Missense_Mutation p.E552D 0.05 deleterious(0.04) possibly_damaging(0.669) TCGA-IB-7651-01 17 67119474 67119474 C T ABCA6 Missense_Mutation p.A448T 0.18 tolerated(0.45) benign(0) TCGA-IB-7651-01 17 67215738 67215738 C A ABCA10 Nonsense_Mutation p.G160* 0.20 TCGA-IB-7651-01 17 67266820 67266820 A G ABCA5 Silent p.S988S 0.19 TCGA-IB-7651-01 17 67273834 67273834 C A ABCA5 Missense_Mutation p.A848S 0.16 tolerated(0.06) benign(0.267) TCGA-IB-7651-01 17 67285372 67285372 A C ABCA5 Missense_Mutation p.S616R 0.21 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 17 67299047 67299047 C T ABCA5 Missense_Mutation p.V311I 0.18 tolerated(1) benign(0.009) TCGA-IB-7651-01 17 67309352 67309352 T G ABCA5 Missense_Mutation p.N63T 0.22 tolerated(0.4) benign(0.011) TCGA-IB-7651-01 17 6733612 6733612 G A TEKT1 Silent p.D28D 0.10 TCGA-IB-7651-01 17 67513640 67513640 G A MAP2K6 Splice_Site p.X45_splice 0.15 TCGA-IB-7651-01 17 67522730 67522730 G A MAP2K6 Missense_Mutation p.R254Q 0.19 tolerated(0.28) benign(0.046) TCGA-IB-7651-01 17 6799936 6799936 G A AC027763.2 Intron 0.12 TCGA-IB-7651-01 17 68128301 68128301 A G KCNJ16 Missense_Mutation p.I25V 0.22 tolerated_low_confidence(0.94) benign(0) TCGA-IB-7651-01 17 68128331 68128331 C T KCNJ16 Nonsense_Mutation p.R35* 0.07 TCGA-IB-7651-01 17 68171388 68171388 G A KCNJ2 Missense_Mutation p.A70T 0.19 tolerated(0.38) benign(0.002) TCGA-IB-7651-01 17 6920612 6920612 C A C17orf49 Missense_Mutation p.S184Y 0.18 deleterious_low_confidence(0.01) benign(0.018) TCGA-IB-7651-01 17 6927518 6927518 C T BCL6B Missense_Mutation p.S99L 0.09 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 6941494 6941494 G A SLC16A13 Missense_Mutation p.A123T 0.18 tolerated(1) benign(0.001) TCGA-IB-7651-01 17 6941591 6941591 T G SLC16A13 Missense_Mutation p.F155C 0.17 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 17 7012170 7012170 G A ASGR2 Silent p.C54C 0.21 TCGA-IB-7651-01 17 7017525 7017525 C A ASGR2 Missense_Mutation p.S12I 0.07 deleterious(0) possibly_damaging(0.532) TCGA-IB-7651-01 17 7080161 7080161 C T ASGR1 Missense_Mutation p.D115N 0.05 tolerated(0.05) benign(0.013) TCGA-IB-7651-01 17 7106591 7106591 C A DLG4 Missense_Mutation p.S231I 0.15 deleterious(0) probably_damaging(0.985) TCGA-IB-7651-01 17 71196797 71196797 A T COG1 Missense_Mutation p.E388V 0.23 deleterious(0.02) benign(0.382) TCGA-IB-7651-01 17 71197321 71197321 T G COG1 Missense_Mutation p.L452R 0.18 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 17 71232062 71232062 T C C17orf80 Silent p.S147S 0.18 TCGA-IB-7651-01 17 71232128 71232128 T C C17orf80 Silent p.A169A 0.19 TCGA-IB-7651-01 17 71232555 71232555 A G C17orf80 Missense_Mutation p.N312D 0.16 tolerated(0.07) possibly_damaging(0.647) TCGA-IB-7651-01 17 71233036 71233036 A G C17orf80 Missense_Mutation p.Y472C 0.17 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 17 71282594 71282594 G A CDC42EP4 Missense_Mutation p.R16C 0.20 deleterious(0) possibly_damaging(0.891) TCGA-IB-7651-01 17 7129389 7129389 G A DVL2 Missense_Mutation p.P669L 0.21 tolerated(0.64) probably_damaging(0.913) TCGA-IB-7651-01 17 7130980 7130980 G A DVL2 Missense_Mutation p.P409S 0.20 tolerated(0.14) benign(0.046) TCGA-IB-7651-01 17 71354234 71354234 G A SDK2 Silent p.I1859I 0.18 TCGA-IB-7651-01 17 71364628 71364628 G T SDK2 Silent p.A1695A 0.11 TCGA-IB-7651-01 17 71398243 71398243 G A SDK2 Missense_Mutation p.T841I 0.17 tolerated(0.06) possibly_damaging(0.772) TCGA-IB-7651-01 17 71418553 71418553 G A SDK2 Silent p.L640L 0.18 TCGA-IB-7651-01 17 7190109 7190109 C T SLC2A4 3'UTR 0.21 TCGA-IB-7651-01 17 7195345 7195345 C A YBX2 Missense_Mutation p.Q123H 0.17 deleterious(0.05) possibly_damaging(0.522) TCGA-IB-7651-01 17 72239532 72239532 C T TTYH2 Missense_Mutation p.L219F 0.19 tolerated(0.11) benign(0.35) TCGA-IB-7651-01 17 72239558 72239558 C T TTYH2 Silent p.C227C 0.17 TCGA-IB-7651-01 17 7226812 7226812 C T NEURL4 Nonsense_Mutation p.W803* 0.19 TCGA-IB-7651-01 17 7228226 7228226 G A NEURL4 Missense_Mutation p.R569C 0.19 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 17 72301399 72301399 C A DNAI2 Silent p.I343I 0.19 TCGA-IB-7651-01 17 72308348 72308348 C T DNAI2 Silent p.A567A 0.11 TCGA-IB-7651-01 17 72345379 72345379 C T KIF19 Silent p.I368I 0.17 TCGA-IB-7651-01 17 72346711 72346711 C T KIF19 Missense_Mutation p.A462V 0.11 deleterious(0) possibly_damaging(0.613) TCGA-IB-7651-01 17 72435964 72435964 C A GPRC5C Missense_Mutation p.L62M 0.19 deleterious(0.02) possibly_damaging(0.857) TCGA-IB-7651-01 17 72436648 72436648 G A GPRC5C Missense_Mutation p.V290M 0.08 deleterious(0.04) benign(0.139) TCGA-IB-7651-01 17 72439974 72439974 C A GPRC5C Missense_Mutation p.P402T 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-IB-7651-01 17 72477915 72477915 G A CD300A Nonsense_Mutation p.W239* 0.14 TCGA-IB-7651-01 17 7249714 7249714 C T ACAP1 Missense_Mutation p.P304L 0.19 tolerated(0.27) possibly_damaging(0.472) TCGA-IB-7651-01 17 7256385 7256385 C A KCTD11 Missense_Mutation p.L42M 0.19 tolerated(0.1) probably_damaging(0.995) TCGA-IB-7651-01 17 7256823 7256823 C T KCTD11 Missense_Mutation p.R188W 0.21 tolerated(0.1) probably_damaging(0.998) TCGA-IB-7651-01 17 7258594 7258594 C T TMEM95 Missense_Mutation p.A24V 0.15 tolerated(0.32) possibly_damaging(0.682) TCGA-IB-7651-01 17 72588204 72588204 T C C17orf77 Missense_Mutation p.S7P 0.17 tolerated_low_confidence(0.28) possibly_damaging(0.504) TCGA-IB-7651-01 17 7259362 7259362 G A TMEM95 Missense_Mutation p.A108T 0.22 tolerated(0.27) possibly_damaging(0.695) TCGA-IB-7651-01 17 7259562 7259562 G A TMEM95 Missense_Mutation p.V134M 0.23 deleterious(0.01) possibly_damaging(0.781) TCGA-IB-7651-01 17 72699238 72699238 C A CD300LF Splice_Site p.X128_splice 0.14 TCGA-IB-7651-01 17 72700910 72700910 C T CD300LF Missense_Mutation p.G30D 0.04 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 17 72733174 72733174 G A RAB37 Missense_Mutation p.G9E 0.18 deleterious_low_confidence(0.01) benign(0) TCGA-IB-7651-01 17 72763082 72763082 G A SLC9A3R1 Silent p.L255L 0.23 TCGA-IB-7651-01 17 72764365 72764365 C T SLC9A3R1 Missense_Mutation p.T293I 0.19 tolerated(0.15) benign(0.233) TCGA-IB-7651-01 17 72838586 72838586 C T GRIN2C Silent p.E1230E 0.15 TCGA-IB-7651-01 17 72842218 72842218 C A GRIN2C Missense_Mutation p.Q779H 0.15 deleterious(0) probably_damaging(0.984) TCGA-IB-7651-01 17 72843044 72843044 C A GRIN2C Missense_Mutation p.D673Y 0.07 deleterious(0) possibly_damaging(0.899) TCGA-IB-7651-01 17 72843650 72843650 C T GRIN2C Missense_Mutation p.G600S 0.14 deleterious(0.04) probably_damaging(1) TCGA-IB-7651-01 17 72848164 72848164 T C GRIN2C Missense_Mutation p.E329G 0.25 tolerated(0.06) benign(0.001) TCGA-IB-7651-01 17 72862343 72862343 C T FDXR Silent p.R182R 0.15 TCGA-IB-7651-01 17 72863044 72863044 C A FDXR Missense_Mutation p.Q87H 0.10 tolerated_low_confidence(0.14) benign(0.031) TCGA-IB-7651-01 17 7291949 7291949 C A TNK1 Missense_Mutation p.P573T 0.16 deleterious(0.02) benign(0.11) TCGA-IB-7651-01 17 72923852 72923852 G A OTOP2 Missense_Mutation p.S201N 0.19 tolerated(0.49) benign(0.004) TCGA-IB-7651-01 17 72937646 72937646 C T OTOP3 Missense_Mutation p.R78W 0.17 tolerated(0.09) probably_damaging(0.996) TCGA-IB-7651-01 17 72949126 72949126 C A HID1 Missense_Mutation p.G676V 0.19 tolerated(0.16) benign(0.02) TCGA-IB-7651-01 17 72956031 72956031 G A HID1 Missense_Mutation p.P318L 0.17 tolerated(0.12) benign(0.026) TCGA-IB-7651-01 17 73096797 73096797 G A SLC16A5 Missense_Mutation p.A347T 0.19 tolerated(0.06) benign(0.229) TCGA-IB-7651-01 17 73126651 73126651 G A NT5C Silent p.L180L 0.22 TCGA-IB-7651-01 17 7315515 7315515 C T NLGN2 Missense_Mutation p.P166L 0.18 tolerated(0.47) benign(0) TCGA-IB-7651-01 17 7318933 7318933 G A NLGN2 Missense_Mutation p.G381S 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 17 73221213 73221213 C A NUP85 Missense_Mutation p.L205M 0.19 deleterious(0.01) probably_damaging(0.933) TCGA-IB-7651-01 17 73231271 73231271 G T NUP85 Missense_Mutation p.G615V 0.16 deleterious(0.04) benign(0.04) TCGA-IB-7651-01 17 73234437 73234437 C T GGA3 Missense_Mutation p.A699T 0.20 tolerated(1) benign(0.014) TCGA-IB-7651-01 17 7323765 7323765 G T SPEM1 Missense_Mutation p.S21I 0.24 deleterious(0.01) possibly_damaging(0.469) TCGA-IB-7651-01 17 73239206 73239206 G T GGA3 Missense_Mutation p.L156M 0.17 deleterious(0.01) possibly_damaging(0.898) TCGA-IB-7651-01 17 7323996 7323996 T C SPEM1 Silent p.I65I 0.19 TCGA-IB-7651-01 17 7324541 7324541 C T SPEM1 Missense_Mutation p.P183S 0.14 tolerated(0.41) benign(0.005) TCGA-IB-7651-01 17 7330031 7330031 C T C17orf74 Missense_Mutation p.R241C 0.19 deleterious(0.02) benign(0.272) TCGA-IB-7651-01 17 73492836 73492836 G A KIAA0195 Missense_Mutation p.R1090H 0.11 tolerated(0.06) probably_damaging(0.999) TCGA-IB-7651-01 17 73494356 73494356 G T KIAA0195 Missense_Mutation p.S1197I 0.19 tolerated(0.27) benign(0.002) TCGA-IB-7651-01 17 73494598 73494598 G A KIAA0195 Missense_Mutation p.A1238T 0.19 tolerated(0.24) benign(0.004) TCGA-IB-7651-01 17 73495078 73495078 G A KIAA0195 Missense_Mutation p.V1305M 0.10 deleterious(0.01) probably_damaging(0.913) TCGA-IB-7651-01 17 73497582 73497582 G A CASKIN2 Missense_Mutation p.A1162V 0.19 tolerated(1) probably_damaging(0.978) TCGA-IB-7651-01 17 73498457 73498457 T C CASKIN2 Missense_Mutation p.T900A 0.10 tolerated(0.34) benign(0) TCGA-IB-7651-01 17 73499216 73499216 C T CASKIN2 Missense_Mutation p.A647T 0.10 tolerated(0.51) benign(0.002) TCGA-IB-7651-01 17 73500901 73500901 T C CASKIN2 Missense_Mutation p.D395G 0.18 tolerated(0.13) possibly_damaging(0.715) TCGA-IB-7651-01 17 73517527 73517527 G A TSEN54 Missense_Mutation p.D187N 0.17 deleterious(0.02) possibly_damaging(0.548) TCGA-IB-7651-01 17 73518145 73518145 C T TSEN54 Missense_Mutation p.A328V 0.12 tolerated(0.34) benign(0.049) TCGA-IB-7651-01 17 73560573 73560573 G A LLGL2 Missense_Mutation p.A341T 0.16 tolerated(0.82) benign(0.217) TCGA-IB-7651-01 17 73566151 73566151 C A LLGL2 Silent p.R563R 0.16 TCGA-IB-7651-01 17 73566533 73566533 G T LLGL2 Missense_Mutation p.S660I 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 17 7366455 7366455 G A ZBTB4 Missense_Mutation p.R616C 0.17 probably_damaging(0.994) TCGA-IB-7651-01 17 7367040 7367040 G A ZBTB4 Missense_Mutation p.R421W 0.19 possibly_damaging(0.876) TCGA-IB-7651-01 17 73723936 73723936 G A ITGB4 Missense_Mutation p.A157T 0.17 deleterious(0) probably_damaging(0.948) TCGA-IB-7651-01 17 73727036 73727036 G T ITGB4 Missense_Mutation p.E361D 0.19 tolerated(0.45) benign(0.03) TCGA-IB-7651-01 17 73745092 73745092 G T ITGB4 Missense_Mutation p.Q1094H 0.13 deleterious(0.03) benign(0.022) TCGA-IB-7651-01 17 73752585 73752585 C A ITGB4 Missense_Mutation p.S1595Y 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 73831747 73831747 G A UNC13D Missense_Mutation p.R570C 0.10 tolerated(0.06) benign(0.339) TCGA-IB-7651-01 17 73844721 73844721 G A WBP2 Silent p.S109S 0.14 TCGA-IB-7651-01 17 73871062 73871062 G A TRIM47 Silent p.G473G 0.17 TCGA-IB-7651-01 17 73888881 73888881 G A TRIM65 Silent p.A155A 0.19 TCGA-IB-7651-01 17 73895245 73895245 G A MRPL38 Missense_Mutation p.L334F 0.16 tolerated(0.07) probably_damaging(0.965) TCGA-IB-7651-01 17 73897891 73897891 C T MRPL38 Missense_Mutation p.A165T 0.18 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 17 73915865 73915865 C T FBF1 Silent p.S659S 0.15 TCGA-IB-7651-01 17 74003558 74003558 C T EVPL Missense_Mutation p.V1910I 0.17 deleterious(0.04) benign(0.098) TCGA-IB-7651-01 17 74003780 74003780 C T EVPL Missense_Mutation p.D1836N 0.08 tolerated(0.17) probably_damaging(0.917) TCGA-IB-7651-01 17 74005791 74005791 C A EVPL Missense_Mutation p.K1165N 0.19 tolerated(0.13) benign(0.006) TCGA-IB-7651-01 17 74013961 74013961 C A EVPL Missense_Mutation p.Q523H 0.11 tolerated(0.12) benign(0.004) TCGA-IB-7651-01 17 74015643 74015643 G - EVPL Frame_Shift_Del p.P368Lfs*73 0.12 TCGA-IB-7651-01 17 74017770 74017770 C T EVPL Silent p.A300A 0.23 TCGA-IB-7651-01 17 74017962 74017962 G A EVPL Missense_Mutation p.R265W 0.24 deleterious(0.01) probably_damaging(0.912) TCGA-IB-7651-01 17 74056448 74056448 G A SRP68 Missense_Mutation p.L260F 0.15 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 17 74057202 74057202 G T SRP68 Missense_Mutation p.A248E 0.17 tolerated(0.05) benign(0.072) TCGA-IB-7651-01 17 74060107 74060107 G A SRP68 Missense_Mutation p.R171C 0.18 deleterious(0.03) possibly_damaging(0.761) TCGA-IB-7651-01 17 74060140 74060140 G A SRP68 Missense_Mutation p.R160C 0.19 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 17 7406566 7406566 G T POLR2A Missense_Mutation p.E961D 0.17 benign(0.012) TCGA-IB-7651-01 17 74073063 74073063 C A GALR2 Missense_Mutation p.L239I 0.18 tolerated(1) benign(0.006) TCGA-IB-7651-01 17 74090663 74090663 C T EXOC7 Splice_Site p.X214_splice 0.18 TCGA-IB-7651-01 17 74154560 74154560 C T RNF157 Missense_Mutation p.V443M 0.13 tolerated_low_confidence(0.09) benign(0.149) TCGA-IB-7651-01 17 74169839 74169839 G A RNF157 Silent p.P80P 0.19 TCGA-IB-7651-01 17 74169858 74169858 G A RNF157 Missense_Mutation p.A74V 0.13 tolerated(0.08) benign(0.155) TCGA-IB-7651-01 17 74289427 74289427 C T QRICH2 Missense_Mutation p.D295N 0.17 tolerated(0.34) possibly_damaging(0.65) TCGA-IB-7651-01 17 74289861 74289861 G A QRICH2 Missense_Mutation p.P150L 0.21 tolerated(0.17) benign(0.058) TCGA-IB-7651-01 17 74308979 74308979 C T PRPSAP1 Missense_Mutation p.R324H 0.16 deleterious(0.02) benign(0.033) TCGA-IB-7651-01 17 74324894 74324894 C A PRPSAP1 Missense_Mutation p.G229W 0.18 deleterious(0.03) possibly_damaging(0.75) TCGA-IB-7651-01 17 74383248 74383248 C T SPHK1 Missense_Mutation p.P332S 0.13 deleterious(0.02) possibly_damaging(0.756) TCGA-IB-7651-01 17 74392554 74392554 C T UBE2O Missense_Mutation p.E822K 0.03 tolerated(0.06) probably_damaging(0.98) TCGA-IB-7651-01 17 74574856 74574856 C T ST6GALNAC2 Silent p.S56S 0.16 TCGA-IB-7651-01 17 7460175 7460175 G A TNFSF12 Missense_Mutation p.E152K 0.15 tolerated(0.09) benign(0.283) TCGA-IB-7651-01 17 74621580 74621580 G A ST6GALNAC1 Silent p.G545G 0.18 TCGA-IB-7651-01 17 74679976 74679976 C T MXRA7 Intron 0.15 TCGA-IB-7651-01 17 74771152 74771152 G T MFSD11 Silent p.L316L 0.20 TCGA-IB-7651-01 17 74944060 74944060 C T MGAT5B Missense_Mutation p.A700V 0.17 tolerated(1) benign(0.005) TCGA-IB-7651-01 17 7496331 7496331 G A FXR2 Missense_Mutation p.S500L 0.14 tolerated_low_confidence(0.64) benign(0.105) TCGA-IB-7651-01 17 7497589 7497589 T C FXR2 Silent p.E329E 0.22 TCGA-IB-7651-01 17 7530896 7530896 G T SAT2 Missense_Mutation p.L20M 0.17 tolerated(0.88) benign(0.064) TCGA-IB-7651-01 17 75478280 75478280 C T SEPT9 Missense_Mutation p.A259V 0.17 tolerated(0.23) benign(0.005) TCGA-IB-7651-01 17 76060855 76060855 T C TNRC6C Silent p.S813S 0.19 TCGA-IB-7651-01 17 76083142 76083142 C A TNRC6C Missense_Mutation p.S1254Y 0.10 deleterious(0) possibly_damaging(0.876) TCGA-IB-7651-01 17 76089140 76089140 G A TNRC6C Missense_Mutation p.S1363N 0.19 tolerated(0.15) possibly_damaging(0.856) TCGA-IB-7651-01 17 76120077 76120077 C T TMC6 Missense_Mutation p.V359M 0.21 deleterious(0.02) possibly_damaging(0.78) TCGA-IB-7651-01 17 76122448 76122448 C T TMC6 Splice_Site p.X61_splice 0.25 TCGA-IB-7651-01 17 76128508 76128508 A G TMC8 Missense_Mutation p.S123G 0.09 deleterious(0.01) benign(0.03) TCGA-IB-7651-01 17 76200768 76200768 C T AFMID Silent p.L114L 0.11 TCGA-IB-7651-01 17 76430117 76430117 T C DNAH17 Missense_Mutation p.N4067S 0.17 benign(0.131) TCGA-IB-7651-01 17 76435168 76435168 G A DNAH17 Nonsense_Mutation p.R3923* 0.18 TCGA-IB-7651-01 17 76450748 76450748 G T DNAH17 Missense_Mutation p.L3390M 0.17 benign(0.053) TCGA-IB-7651-01 17 76451842 76451842 G T DNAH17 Missense_Mutation p.L3338M 0.18 possibly_damaging(0.773) TCGA-IB-7651-01 17 76458993 76458993 G A DNAH17 Missense_Mutation p.T3022M 0.18 benign(0.01) TCGA-IB-7651-01 17 76475586 76475586 C T DNAH17 Silent p.Q2613Q 0.18 TCGA-IB-7651-01 17 76482324 76482324 G T DNAH17 Silent p.G2347G 0.17 TCGA-IB-7651-01 17 76496430 76496430 G A DNAH17-AS1 Missense_Mutation p.G121D 0.25 unknown(0) TCGA-IB-7651-01 17 76498715 76498715 C A DNAH17 Missense_Mutation p.E1705D 0.18 probably_damaging(0.923) TCGA-IB-7651-01 17 76565528 76565528 C A DNAH17 Missense_Mutation p.A376S 0.17 benign(0.004) TCGA-IB-7651-01 17 7660422 7660422 C T DNAH2 Missense_Mutation p.L640F 0.19 probably_damaging(0.994) TCGA-IB-7651-01 17 7667264 7667264 C T DNAH2 Nonsense_Mutation p.Q1032* 0.20 TCGA-IB-7651-01 17 76799818 76799818 G A USP36 Missense_Mutation p.P820L 0.12 tolerated_low_confidence(0.4) benign(0.001) TCGA-IB-7651-01 17 76803497 76803497 C T USP36 Silent p.Q543Q 0.16 TCGA-IB-7651-01 17 76851657 76851657 A G TIMP2 3'UTR 0.22 TCGA-IB-7651-01 17 7689644 7689644 A C DNAH2 Missense_Mutation p.N2111T 0.08 benign(0.014) TCGA-IB-7651-01 17 7691221 7691221 C T DNAH2 Missense_Mutation p.P2216L 0.08 probably_damaging(0.992) TCGA-IB-7651-01 17 7691258 7691258 C A DNAH2 Missense_Mutation p.D2228E 0.12 probably_damaging(0.996) TCGA-IB-7651-01 17 76967886 76967886 G A LGALS3BP Silent p.G510G 0.20 TCGA-IB-7651-01 17 7699832 7699832 G T DNAH2 Missense_Mutation p.Q2575H 0.20 benign(0.188) TCGA-IB-7651-01 17 77040048 77040048 A G C1QTNF1 5'UTR 0.20 TCGA-IB-7651-01 17 77042743 77042743 G T C1QTNF1 Missense_Mutation p.A88S 0.18 tolerated(0.36) benign(0.111) TCGA-IB-7651-01 17 77044003 77044003 G A C1QTNF1 Missense_Mutation p.D227N 0.18 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 17 77082447 77082447 G A ENGASE 3'UTR 0.16 TCGA-IB-7651-01 17 7735942 7735942 G A DNAH2 Missense_Mutation p.A4258T 0.18 possibly_damaging(0.593) TCGA-IB-7651-01 17 7750937 7750937 G T KDM6B Missense_Mutation p.S444I 0.20 unknown(0) TCGA-IB-7651-01 17 7751581 7751581 G A KDM6B Missense_Mutation p.G659R 0.20 unknown(0) TCGA-IB-7651-01 17 7754506 7754506 G A KDM6B Missense_Mutation p.A1281T 0.07 possibly_damaging(0.907) TCGA-IB-7651-01 17 7760629 7760629 G A LSMD1 Missense_Mutation p.A38V 0.16 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-IB-7651-01 17 77709051 77709051 C T ENPP7 Silent p.H203H 0.16 TCGA-IB-7651-01 17 77709091 77709091 C T ENPP7 Missense_Mutation p.R217W 0.21 deleterious(0) possibly_damaging(0.849) TCGA-IB-7651-01 17 77711050 77711050 C T ENPP7 Silent p.L413L 0.09 TCGA-IB-7651-01 17 77757883 77757883 T G CBX2 Missense_Mutation p.L214R 0.22 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 17 7794054 7794055 - A CHD3 Frame_Shift_Ins p.Q188Afs*25 0.21 TCGA-IB-7651-01 17 78024044 78024044 C A CCDC40 Missense_Mutation p.T374N 0.22 tolerated(0.49) benign(0.002) TCGA-IB-7651-01 17 78032413 78032413 C T CCDC40 Missense_Mutation p.T427M 0.19 tolerated(0.23) benign(0.019) TCGA-IB-7651-01 17 7803329 7803329 G A CHD3 Missense_Mutation p.R946Q 0.14 possibly_damaging(0.553) TCGA-IB-7651-01 17 78055849 78055849 A G CCDC40 Missense_Mutation p.T661A 0.16 tolerated(0.06) benign(0.023) TCGA-IB-7651-01 17 7806616 7806616 C T CHD3 Silent p.G1233G 0.22 TCGA-IB-7651-01 17 7809534 7809534 C T CHD3 Intron 0.12 TCGA-IB-7651-01 17 7810694 7810694 A G CHD3 Silent p.P1663P 0.19 TCGA-IB-7651-01 17 78111992 78111992 G A EIF4A3 Silent p.Y272Y 0.20 TCGA-IB-7651-01 17 7811277 7811277 C T CHD3 Nonsense_Mutation p.R1757* 0.16 TCGA-IB-7651-01 17 78120716 78120716 C T EIF4A3 Silent p.K15K 0.24 TCGA-IB-7651-01 17 7814233 7814233 G A CHD3 Silent p.G2000G 0.06 TCGA-IB-7651-01 17 78165181 78165181 C T CARD14 Silent p.D383D 0.19 TCGA-IB-7651-01 17 78184610 78184610 A C SGSH Missense_Mutation p.F384V 0.17 deleterious(0.01) benign(0.41) TCGA-IB-7651-01 17 78197116 78197116 A C SLC26A11 Missense_Mutation p.I165L 0.17 deleterious(0) possibly_damaging(0.651) TCGA-IB-7651-01 17 78215619 78215619 C T SLC26A11 Silent p.I345I 0.19 TCGA-IB-7651-01 17 78327569 78327569 G A RNF213 Intron 0.26 TCGA-IB-7651-01 17 78335544 78335544 G T RNF213 Missense_Mutation p.K3737N 0.16 benign(0.156) TCGA-IB-7651-01 17 78337097 78337097 C T RNF213 Silent p.L3851L 0.05 TCGA-IB-7651-01 17 7833812 7833812 C A TRAPPC1 3'UTR 0.21 TCGA-IB-7651-01 17 78346393 78346393 T G RNF213 Missense_Mutation p.F4204V 0.11 probably_damaging(0.998) TCGA-IB-7651-01 17 78363064 78363064 C T RNF213 Missense_Mutation p.T5031I 0.15 possibly_damaging(0.65) TCGA-IB-7651-01 17 78398856 78398856 G A ENDOV Missense_Mutation p.D181N 0.20 tolerated(0.09) benign(0.056) TCGA-IB-7651-01 17 78410022 78410022 C A ENDOV 3'UTR 0.14 TCGA-IB-7651-01 17 7846813 7846813 G A CNTROB Silent p.R472R 0.16 TCGA-IB-7651-01 17 78681708 78681708 G A RPTOR Missense_Mutation p.R139H 0.16 deleterious(0) probably_damaging(0.981) TCGA-IB-7651-01 17 78796055 78796055 C A RPTOR Silent p.I315I 0.16 TCGA-IB-7651-01 17 78897287 78897287 C T RPTOR Intron 0.14 TCGA-IB-7651-01 17 78897351 78897351 C T RPTOR Missense_Mutation p.P896S 0.12 tolerated(0.62) benign(0.021) TCGA-IB-7651-01 17 78923309 78923309 C T RPTOR Missense_Mutation p.A1111V 0.17 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 17 78933943 78933943 C T RPTOR Silent p.I1181I 0.11 TCGA-IB-7651-01 17 79059520 79059520 C A BAIAP2 Missense_Mutation p.L116M 0.15 tolerated(0.6) probably_damaging(0.999) TCGA-IB-7651-01 17 79077823 79077823 G A BAIAP2 Silent p.P327P 0.18 TCGA-IB-7651-01 17 79090026 79090026 C T BAIAP2 Intron 0.21 TCGA-IB-7651-01 17 79094040 79094040 C T AATK Silent p.V1232V 0.11 TCGA-IB-7651-01 17 79094443 79094443 G T AATK Missense_Mutation p.S1098Y 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 17 79163467 79163467 G A AZI1 3'UTR 0.17 TCGA-IB-7651-01 17 79163519 79163519 G T AZI1 3'UTR 0.20 TCGA-IB-7651-01 17 79166137 79166137 G A AZI1 Missense_Mutation p.A868V 0.18 tolerated(0.11) probably_damaging(0.992) TCGA-IB-7651-01 17 79181033 79181033 C T AZI1 Silent p.T93T 0.18 TCGA-IB-7651-01 17 79219207 79219207 C T SLC38A10 3'UTR 0.15 TCGA-IB-7651-01 17 79219815 79219815 G A SLC38A10 Silent p.G967G 0.21 TCGA-IB-7651-01 17 79226464 79226464 G A SLC38A10 Silent p.G492G 0.19 TCGA-IB-7651-01 17 79257209 79257209 C A SLC38A10 Missense_Mutation p.Q119H 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 17 79409669 79409669 G A RP11-1055B8.7 Missense_Mutation p.D432N 0.11 benign(0.327) TCGA-IB-7651-01 17 79411733 79411733 G A RP11-1055B8.7 Missense_Mutation p.G851D 0.23 probably_damaging(1) TCGA-IB-7651-01 17 79414740 79414740 C A RP11-1055B8.7 Missense_Mutation p.P1281H 0.18 probably_damaging(0.919) TCGA-IB-7651-01 17 79477583 79477583 C A ACTG1 3'UTR 0.12 TCGA-IB-7651-01 17 79512857 79512857 G A C17orf70 Missense_Mutation p.A742V 0.11 tolerated(0.06) benign(0.065) TCGA-IB-7651-01 17 79514338 79514338 G T C17orf70 Silent p.G590G 0.23 TCGA-IB-7651-01 17 79612028 79612028 G T TSPAN10 Missense_Mutation p.G16V 0.16 deleterious(0.05) probably_damaging(0.979) TCGA-IB-7651-01 17 79637483 79637483 C T CCDC137 Missense_Mutation p.A166V 0.17 tolerated(0.12) benign(0.286) TCGA-IB-7651-01 17 79662228 79662228 C A HGS Missense_Mutation p.P385H 0.20 tolerated(0.4) benign(0.172) TCGA-IB-7651-01 17 79667816 79667816 C T HGS Missense_Mutation p.S703F 0.22 deleterious(0) probably_damaging(0.974) TCGA-IB-7651-01 17 7976504 7976504 G A ALOX12B Silent p.L630L 0.19 TCGA-IB-7651-01 17 7978974 7978974 C A ALOX12B Silent p.P531P 0.18 TCGA-IB-7651-01 17 79792819 79792819 C A PPP1R27 Missense_Mutation p.R4I 0.16 deleterious(0.01) probably_damaging(0.986) TCGA-IB-7651-01 17 79827105 79827105 C T ARHGDIA Missense_Mutation p.R120Q 0.20 tolerated(0.05) benign(0.008) TCGA-IB-7651-01 17 79827416 79827416 A G ARHGDIA Splice_Site p.X92_splice 0.15 TCGA-IB-7651-01 17 7984225 7984225 C T ALOX12B Silent p.R168R 0.05 TCGA-IB-7651-01 17 79852322 79852322 G A ANAPC11 Intron 0.07 TCGA-IB-7651-01 17 79870176 79870176 C T SIRT7 3'UTR 0.21 TCGA-IB-7651-01 17 79892866 79892866 C A PYCR1 Missense_Mutation p.C159F 0.13 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 17 79973230 79973230 C T ASPSCR1 Missense_Mutation p.R545W 0.14 deleterious(0.04) possibly_damaging(0.722) TCGA-IB-7651-01 17 79990867 79990867 C T RAC3 Silent p.F90F 0.19 TCGA-IB-7651-01 17 80012478 80012478 C T GPS1 Missense_Mutation p.A174V 0.22 deleterious(0.03) possibly_damaging(0.733) TCGA-IB-7651-01 17 80019817 80019817 G T DUS1L Missense_Mutation p.L185M 0.13 tolerated(0.13) benign(0.024) TCGA-IB-7651-01 17 80021381 80021381 G T DUS1L Silent p.A120A 0.08 TCGA-IB-7651-01 17 80037394 80037394 G A FASN Missense_Mutation p.R2413C 0.19 deleterious(0.05) probably_damaging(0.941) TCGA-IB-7651-01 17 80038697 80038697 G A FASN Missense_Mutation p.R2233W 0.17 deleterious(0) possibly_damaging(0.751) TCGA-IB-7651-01 17 80039046 80039046 C T FASN Missense_Mutation p.A2197T 0.15 tolerated(0.46) benign(0.01) TCGA-IB-7651-01 17 80039892 80039892 G A FASN Silent p.G2052G 0.20 TCGA-IB-7651-01 17 80039903 80039903 G A FASN Missense_Mutation p.R2049W 0.20 tolerated(0.07) probably_damaging(0.932) TCGA-IB-7651-01 17 80042511 80042511 G A FASN Missense_Mutation p.S1549F 0.12 deleterious(0) benign(0.194) TCGA-IB-7651-01 17 80045103 80045103 G T FASN Missense_Mutation p.L1084M 0.16 deleterious(0.04) possibly_damaging(0.695) TCGA-IB-7651-01 17 80045873 80045873 G A FASN Silent p.S941S 0.22 TCGA-IB-7651-01 17 80047259 80047259 G A FASN Missense_Mutation p.A656V 0.19 tolerated(0.09) benign(0.147) TCGA-IB-7651-01 17 80050597 80050597 G A FASN Silent p.I290I 0.13 TCGA-IB-7651-01 17 80050687 80050687 G A FASN Silent p.G260G 0.23 TCGA-IB-7651-01 17 80159511 80159511 G A CCDC57 Nonsense_Mutation p.Q104* 0.09 TCGA-IB-7651-01 17 80159556 80159556 G A CCDC57 Missense_Mutation p.R89W 0.09 deleterious(0) possibly_damaging(0.827) TCGA-IB-7651-01 17 80159683 80159683 C T CCDC57 Silent p.A46A 0.21 TCGA-IB-7651-01 17 80202665 80202665 G A CSNK1D Missense_Mutation p.H414Y 0.20 deleterious_low_confidence(0.05) benign(0.063) TCGA-IB-7651-01 17 80273173 80273173 C T CD7 3'UTR 0.14 TCGA-IB-7651-01 17 80274664 80274664 C A CD7 Silent p.G92G 0.17 TCGA-IB-7651-01 17 80332627 80332627 G A UTS2R Missense_Mutation p.V143I 0.24 tolerated(0.35) benign(0.031) TCGA-IB-7651-01 17 80356166 80356166 C T OGFOD3 Silent p.S243S 0.16 TCGA-IB-7651-01 17 80391663 80391663 C T HEXDC Missense_Mutation p.P138S 0.15 tolerated(0.1) benign(0.171) TCGA-IB-7651-01 17 80400400 80400400 C T HEXDC Missense_Mutation p.P564S 0.15 deleterious_low_confidence(0) benign(0.012) TCGA-IB-7651-01 17 80402326 80402326 C T C17orf62 Missense_Mutation p.R147H 0.16 tolerated(0.07) benign(0.055) TCGA-IB-7651-01 17 8051103 8051103 C T PER1 Missense_Mutation p.R426H 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 17 80788752 80788752 G T ZNF750 Missense_Mutation p.L480I 0.21 tolerated(0.46) possibly_damaging(0.646) TCGA-IB-7651-01 17 80790046 80790046 G T ZNF750 Silent p.L95L 0.20 TCGA-IB-7651-01 17 80887372 80887372 C T TBCD Missense_Mutation p.S996L 0.10 deleterious(0) probably_damaging(0.971) TCGA-IB-7651-01 17 8131620 8131620 G A CTC1 Nonsense_Mutation p.R1178* 0.19 TCGA-IB-7651-01 17 8131635 8131635 G A CTC1 Missense_Mutation p.P1173S 0.20 tolerated(0.15) benign(0.417) TCGA-IB-7651-01 17 8135057 8135057 G T CTC1 Missense_Mutation p.A821D 0.14 deleterious(0) possibly_damaging(0.675) TCGA-IB-7651-01 17 8135104 8135104 G A CTC1 Silent p.V805V 0.16 TCGA-IB-7651-01 17 8138511 8138511 G T CTC1 Missense_Mutation p.S433R 0.20 tolerated(0.08) benign(0.001) TCGA-IB-7651-01 17 8161476 8161476 C A PFAS Missense_Mutation p.S432Y 0.19 tolerated(0.75) benign(0.015) TCGA-IB-7651-01 17 8166542 8166542 A G PFAS Missense_Mutation p.N509S 0.09 deleterious(0.04) probably_damaging(0.913) TCGA-IB-7651-01 17 8168391 8168391 C T PFAS Missense_Mutation p.A743V 0.17 deleterious(0.01) possibly_damaging(0.689) TCGA-IB-7651-01 17 8168671 8168671 G A PFAS Silent p.A782A 0.19 TCGA-IB-7651-01 17 8169597 8169597 T C PFAS Missense_Mutation p.V916A 0.16 tolerated(0.06) benign(0.039) TCGA-IB-7651-01 17 8197811 8197811 G A SLC25A35 Silent p.S105S 0.15 TCGA-IB-7651-01 17 8215310 8215310 G A ARHGEF15 Intron 0.08 TCGA-IB-7651-01 17 8215524 8215524 C A ARHGEF15 Missense_Mutation p.P56Q 0.19 tolerated_low_confidence(0.06) benign(0.424) TCGA-IB-7651-01 17 8222373 8222373 G T ARHGEF15 Missense_Mutation p.Q694H 0.18 deleterious(0.01) probably_damaging(0.98) TCGA-IB-7651-01 17 8243676 8243676 A C ODF4 Missense_Mutation p.K103Q 0.16 deleterious(0.02) probably_damaging(0.943) TCGA-IB-7651-01 17 8272507 8272507 G A KRBA2 Missense_Mutation p.P475L 0.18 deleterious(0.01) benign(0.038) TCGA-IB-7651-01 17 8274848 8274848 G T KRBA2 Missense_Mutation p.P2H 0.15 deleterious_low_confidence(0) unknown(0) TCGA-IB-7651-01 17 8354153 8354153 G A NDEL1 Silent p.S194S 0.23 TCGA-IB-7651-01 17 8358148 8358148 T C NDEL1 Silent p.T245T 0.18 TCGA-IB-7651-01 17 8380302 8380302 G A MYH10 Missense_Mutation p.A1924V 0.20 possibly_damaging(0.821) TCGA-IB-7651-01 17 8381680 8381680 T C MYH10 Silent p.R1894R 0.05 TCGA-IB-7651-01 17 8390805 8390805 G A MYH10 Silent p.I1664I 0.20 TCGA-IB-7651-01 17 8445487 8445487 C T MYH10 Missense_Mutation p.E515K 0.18 benign(0.245) TCGA-IB-7651-01 17 8448851 8448851 C T MYH10 Missense_Mutation p.R449H 0.19 probably_damaging(0.998) TCGA-IB-7651-01 17 8633478 8633478 T G CCDC42 Missense_Mutation p.K307N 0.22 tolerated(0.06) benign(0.403) TCGA-IB-7651-01 17 8638779 8638779 G T CCDC42 Missense_Mutation p.L215M 0.14 deleterious(0.03) probably_damaging(0.996) TCGA-IB-7651-01 17 8647952 8647952 G T CCDC42 5'UTR 0.19 TCGA-IB-7651-01 17 8702270 8702270 G T MFSD6L Missense_Mutation p.L57I 0.19 deleterious(0.01) probably_damaging(0.99) TCGA-IB-7651-01 17 8725208 8725208 G A PIK3R6 Missense_Mutation p.A611V 0.21 deleterious(0.02) possibly_damaging(0.623) TCGA-IB-7651-01 17 8731458 8731458 G A PIK3R6 Missense_Mutation p.L455F 0.09 tolerated(1) benign(0.011) TCGA-IB-7651-01 17 8741937 8741937 G A PIK3R6 Nonsense_Mutation p.R45* 0.20 TCGA-IB-7651-01 17 8783944 8783944 G A PIK3R5 3'UTR 0.18 TCGA-IB-7651-01 17 8791855 8791855 G A PIK3R5 Missense_Mutation p.P417S 0.21 tolerated(0.31) benign(0.014) TCGA-IB-7651-01 17 900354 900354 A G TIMM22 5'Flank 0.19 TCGA-IB-7651-01 17 902750 902750 A G TIMM22 Splice_Site p.X146_splice 0.17 TCGA-IB-7651-01 17 9471724 9471724 T C STX8 Silent p.R27R 0.12 TCGA-IB-7651-01 17 9489210 9489210 G A WDR16 Missense_Mutation p.G64D 0.19 tolerated(0.26) benign(0.003) TCGA-IB-7651-01 17 9538792 9538792 T C WDR16 Missense_Mutation p.V464A 0.19 deleterious(0) probably_damaging(0.98) TCGA-IB-7651-01 17 9631500 9631500 C T USP43 Silent p.G855G 0.23 TCGA-IB-7651-01 17 9632308 9632308 T C USP43 3'UTR 0.21 TCGA-IB-7651-01 17 9632313 9632313 C T USP43 3'UTR 0.06 TCGA-IB-7651-01 17 9745927 9745927 G T GLP2R Missense_Mutation p.K166N 0.22 tolerated(0.16) benign(0.013) TCGA-IB-7651-01 17 9764515 9764515 G T GLP2R Missense_Mutation p.G329W 0.21 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 17 9783772 9783772 A C GLP2R Missense_Mutation p.Q408P 0.04 tolerated(0.09) probably_damaging(0.968) TCGA-IB-7651-01 17 9821334 9821334 T C GAS7 Missense_Mutation p.D434G 0.18 deleterious(0.01) probably_damaging(0.977) TCGA-IB-7651-01 17 9837492 9837492 G T GAS7 Missense_Mutation p.F292L 0.11 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 17 9939771 9939771 T C GAS7 Intron 0.19 TCGA-IB-7651-01 17 9939779 9939779 G T GAS7 Intron 0.21 TCGA-IB-7651-01 17 994935 994935 C A ABR Missense_Mutation p.Q167H 0.17 tolerated(0.2) benign(0.113) TCGA-IB-7651-01 18 10471563 10471563 G A APCDD1 Silent p.R93R 0.17 TCGA-IB-7651-01 18 10671435 10671435 G A PIEZO2 3'Flank 0.15 TCGA-IB-7651-01 18 10697835 10697835 A C PIEZO2 Silent p.V2133V 0.15 TCGA-IB-7651-01 18 12014290 12014290 C T IMPA2 Silent p.C136C 0.15 TCGA-IB-7651-01 18 12262855 12262855 C T CIDEA Nonsense_Mutation p.R24* 0.17 TCGA-IB-7651-01 18 12264367 12264367 C T CIDEA Missense_Mutation p.T82I 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 18 12325894 12325894 G A TUBB6 Missense_Mutation p.G369D 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-IB-7651-01 18 12353089 12353089 C T AFG3L2 Silent p.A411A 0.17 TCGA-IB-7651-01 18 12358738 12358738 C A AFG3L2 Missense_Mutation p.E319D 0.21 deleterious(0.01) benign(0.136) TCGA-IB-7651-01 18 12686292 12686292 C T CEP76 Missense_Mutation p.C364Y 0.16 tolerated(0.4) possibly_damaging(0.571) TCGA-IB-7651-01 18 12699159 12699159 C T CEP76 Silent p.L113L 0.12 TCGA-IB-7651-01 18 12955494 12955494 G A SEH1L Nonsense_Mutation p.W65* 0.19 TCGA-IB-7651-01 18 13059253 13059253 C T CEP192 Missense_Mutation p.A1477V 0.20 deleterious(0) probably_damaging(0.96) TCGA-IB-7651-01 18 13059273 13059273 G A CEP192 Missense_Mutation p.V1484I 0.17 deleterious(0) probably_damaging(0.918) TCGA-IB-7651-01 18 13068922 13068922 G A CEP192 Missense_Mutation p.V1632I 0.20 tolerated(0.13) benign(0.086) TCGA-IB-7651-01 18 13387753 13387753 C A LDLRAD4 Missense_Mutation p.A11D 0.20 deleterious_low_confidence(0.01) benign(0.247) TCGA-IB-7651-01 18 13760059 13760059 C A RNMT 3'UTR 0.22 TCGA-IB-7651-01 18 13826258 13826258 G A MC5R Missense_Mutation p.G165D 0.20 deleterious(0.03) possibly_damaging(0.48) TCGA-IB-7651-01 18 13884791 13884791 T C MC2R Missense_Mutation p.T243A 0.16 tolerated(0.1) probably_damaging(0.997) TCGA-IB-7651-01 18 13884825 13884825 G T MC2R Nonsense_Mutation p.C231* 0.17 TCGA-IB-7651-01 18 13885538 13885538 G A MC2R 5'UTR 0.16 TCGA-IB-7651-01 18 14105441 14105441 G A ZNF519 Silent p.H366H 0.17 TCGA-IB-7651-01 18 14179501 14179501 G A ANKRD20A5P RNA 0.20 TCGA-IB-7651-01 18 14478910 14478910 C T CXADRP3 RNA 0.16 TCGA-IB-7651-01 18 14848795 14848795 C T ANKRD30B Nonsense_Mutation p.Q969* 0.08 TCGA-IB-7651-01 18 15316640 15316640 A C RNU6-721P 3'Flank 0.17 TCGA-IB-7651-01 18 163369 163369 A G USP14 Silent p.P26P 0.21 TCGA-IB-7651-01 18 18588085 18588085 C A ROCK1 Missense_Mutation p.R494I 0.17 deleterious(0.01) possibly_damaging(0.739) TCGA-IB-7651-01 18 19144199 19144199 C A ESCO1 Nonsense_Mutation p.E596* 0.18 TCGA-IB-7651-01 18 19147945 19147945 A C ESCO1 Missense_Mutation p.F547L 0.22 tolerated(0.65) benign(0.002) TCGA-IB-7651-01 18 19154572 19154572 T G ESCO1 Missense_Mutation p.K78T 0.20 deleterious(0.02) benign(0.118) TCGA-IB-7651-01 18 19154850 19154850 T G ESCO1 5'UTR 0.20 TCGA-IB-7651-01 18 19283700 19283700 C T ABHD3 Silent p.Q57Q 0.14 TCGA-IB-7651-01 18 19437203 19437203 C T MIB1 Silent p.I926I 0.17 TCGA-IB-7651-01 18 19444793 19444793 G A MIB1 3'UTR 0.11 TCGA-IB-7651-01 18 197615 197615 G T USP14 Splice_Site p.X199_splice 0.14 TCGA-IB-7651-01 18 19997803 19997803 C T CTAGE1 5'UTR 0.20 TCGA-IB-7651-01 18 20573396 20573396 C T RBBP8 Missense_Mutation p.R536C 0.20 deleterious(0.04) benign(0.035) TCGA-IB-7651-01 18 20716380 20716380 G T CABLES1 Missense_Mutation p.Q218H 0.15 tolerated_low_confidence(0.1) benign(0.002) TCGA-IB-7651-01 18 21053554 21053554 G A RIOK3 Missense_Mutation p.R326H 0.21 tolerated(0.45) benign(0.031) TCGA-IB-7651-01 18 21057190 21057190 C T RIOK3 Silent p.H434H 0.21 TCGA-IB-7651-01 18 21083650 21083650 T C C18orf8 Missense_Mutation p.V23A 0.15 tolerated(0.26) benign(0.053) TCGA-IB-7651-01 18 21084355 21084355 T C C18orf8 Silent p.G41G 0.18 TCGA-IB-7651-01 18 21106645 21106645 C A C18orf8 Missense_Mutation p.L369I 0.08 tolerated(0.08) benign(0.165) TCGA-IB-7651-01 18 21112155 21112155 C A NPC1 3'UTR 0.19 TCGA-IB-7651-01 18 21121149 21121149 G T NPC1 Nonsense_Mutation p.C799* 0.16 TCGA-IB-7651-01 18 21134834 21134834 T C NPC1 Missense_Mutation p.I481V 0.19 tolerated(0.34) benign(0.053) TCGA-IB-7651-01 18 21148813 21148813 T C NPC1 Missense_Mutation p.Y146C 0.14 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 18 21444821 21444822 - A LAMA3 Frame_Shift_Ins p.K1555Efs*16 0.14 TCGA-IB-7651-01 18 21494442 21494442 C T LAMA3 Silent p.D2466D 0.18 TCGA-IB-7651-01 18 21496608 21496608 G T LAMA3 Missense_Mutation p.Q2624H 0.04 possibly_damaging(0.873) TCGA-IB-7651-01 18 21519246 21519246 C A LAMA3 Nonsense_Mutation p.C2974* 0.04 TCGA-IB-7651-01 18 21529773 21529773 G A LAMA3 Silent p.Q3132Q 0.16 TCGA-IB-7651-01 18 21705488 21705488 T A TTC39C Missense_Mutation p.F465Y 0.17 tolerated(0.06) benign(0.047) TCGA-IB-7651-01 18 21758017 21758017 C A OSBPL1A Nonsense_Mutation p.E685* 0.19 TCGA-IB-7651-01 18 21805159 21805159 G T OSBPL1A Missense_Mutation p.S483Y 0.16 tolerated(0.1) probably_damaging(0.928) TCGA-IB-7651-01 18 22029853 22029853 G A IMPACT Missense_Mutation p.R277H 0.18 tolerated(0.07) probably_damaging(0.99) TCGA-IB-7651-01 18 22804820 22804820 C T ZNF521 Missense_Mutation p.R1021H 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 18 22806342 22806342 A C ZNF521 Missense_Mutation p.F514V 0.19 deleterious(0.04) probably_damaging(0.999) TCGA-IB-7651-01 18 22806822 22806822 C T ZNF521 Missense_Mutation p.V354M 0.24 tolerated_low_confidence(1) benign(0.28) TCGA-IB-7651-01 18 22902012 22902012 G A ZNF521 Silent p.S60S 0.17 TCGA-IB-7651-01 18 23612494 23612494 G A SS18 Missense_Mutation p.P367S 0.15 deleterious_low_confidence(0.02) benign(0.035) TCGA-IB-7651-01 18 23866093 23866093 C A TAF4B Missense_Mutation p.A407D 0.16 tolerated(0.14) benign(0.103) TCGA-IB-7651-01 18 23866330 23866330 C A TAF4B Missense_Mutation p.P486H 0.18 deleterious(0) possibly_damaging(0.838) TCGA-IB-7651-01 18 24056620 24056620 G A KCTD1 Silent p.I56I 0.24 TCGA-IB-7651-01 18 24496351 24496351 C T CHST9 Missense_Mutation p.D402N 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 18 24496606 24496606 C T CHST9 Missense_Mutation p.A317T 0.17 deleterious(0) probably_damaging(0.936) TCGA-IB-7651-01 18 24524299 24524299 G A CHST9 Silent p.T78T 0.19 TCGA-IB-7651-01 18 25565534 25565534 G A CDH2 Missense_Mutation p.P645S 0.13 tolerated(0.34) probably_damaging(1) TCGA-IB-7651-01 18 25570308 25570308 C T CDH2 Missense_Mutation p.D451N 0.20 deleterious(0) benign(0.236) TCGA-IB-7651-01 18 25572675 25572675 G A CDH2 Missense_Mutation p.R430W 0.17 deleterious(0.02) probably_damaging(0.984) TCGA-IB-7651-01 18 2567234 2567234 C T METTL4 5'UTR 0.18 TCGA-IB-7651-01 18 265360 265360 T G THOC1 Missense_Mutation p.E44D 0.20 tolerated(0.3) possibly_damaging(0.695) TCGA-IB-7651-01 18 2707808 2707808 C T SMCHD1 Missense_Mutation p.A717V 0.19 tolerated(0.1) possibly_damaging(0.795) TCGA-IB-7651-01 18 28576801 28576801 T G DSC3 Missense_Mutation p.T817P 0.16 deleterious(0) possibly_damaging(0.835) TCGA-IB-7651-01 18 28586953 28586953 A G DSC3 Missense_Mutation p.V603A 0.19 tolerated(0.72) benign(0.004) TCGA-IB-7651-01 18 28588089 28588089 G A DSC3 Missense_Mutation p.T519I 0.22 deleterious(0.03) benign(0.038) TCGA-IB-7651-01 18 28602455 28602455 C T DSC3 Silent p.G263G 0.14 TCGA-IB-7651-01 18 28605830 28605830 G A DSC3 Missense_Mutation p.R176C 0.17 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 18 28669454 28669454 C A DSC2 Missense_Mutation p.G193V 0.20 deleterious(0.04) probably_damaging(1) TCGA-IB-7651-01 18 28672188 28672188 C T DSC2 Missense_Mutation p.G77D 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 18 28672216 28672216 C A DSC2 Missense_Mutation p.D68Y 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 18 28710482 28710482 T G DSC1 Missense_Mutation p.K894Q 0.19 tolerated(0.07) benign(0.065) TCGA-IB-7651-01 18 28725591 28725591 G A DSC1 Missense_Mutation p.P308S 0.17 tolerated(1) benign(0.04) TCGA-IB-7651-01 18 2890564 2890564 G A EMILIN2 Missense_Mutation p.E147K 0.13 tolerated(0.2) possibly_damaging(0.524) TCGA-IB-7651-01 18 28923620 28923620 C T DSG1 Intron 0.21 TCGA-IB-7651-01 18 28934818 28934818 C T DSG1 Nonsense_Mutation p.R887* 0.18 TCGA-IB-7651-01 18 28935055 28935055 G T DSG1 Missense_Mutation p.G966C 0.18 deleterious(0.01) probably_damaging(0.979) TCGA-IB-7651-01 18 28983528 28983528 C T DSG4 Missense_Mutation p.P523S 0.14 deleterious(0.03) probably_damaging(1) TCGA-IB-7651-01 18 28992915 28992915 A G DSG4 Missense_Mutation p.D846G 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 18 29055872 29055872 C A DSG3 Silent p.S883S 0.19 TCGA-IB-7651-01 18 29115361 29115361 T C DSG2 Missense_Mutation p.V470A 0.19 deleterious(0) benign(0.174) TCGA-IB-7651-01 18 29118725 29118725 C T DSG2 Silent p.L555L 0.16 TCGA-IB-7651-01 18 2920375 2920375 A G LPIN2 Silent p.N869N 0.06 TCGA-IB-7651-01 18 29339989 29339989 G A SLC25A52 Silent p.V222V 0.09 TCGA-IB-7651-01 18 2937906 2937906 C T LPIN2 Missense_Mutation p.E318K 0.23 tolerated(0.72) benign(0.001) TCGA-IB-7651-01 18 29429662 29429662 C T TRAPPC8 Missense_Mutation p.R1201Q 0.18 tolerated(0.14) benign(0.127) TCGA-IB-7651-01 18 29429679 29429679 A G TRAPPC8 Silent p.C1195C 0.16 TCGA-IB-7651-01 18 2945910 2945910 G A LPIN2 Intron 0.21 TCGA-IB-7651-01 18 29511465 29511465 T G TRAPPC8 Missense_Mutation p.N60T 0.17 deleterious(0.01) probably_damaging(0.966) TCGA-IB-7651-01 18 29867839 29867839 C T GAREM Missense_Mutation p.E241K 0.17 deleterious(0) probably_damaging(0.919) TCGA-IB-7651-01 18 29972971 29972971 T - GAREM Frame_Shift_Del p.N50Mfs*5 0.22 TCGA-IB-7651-01 18 30092376 30092376 T C WBP11P1 RNA 0.19 TCGA-IB-7651-01 18 30093647 30093647 C A WBP11P1 RNA 0.17 TCGA-IB-7651-01 18 30321972 30321972 G T KLHL14 Missense_Mutation p.L330M 0.15 deleterious(0.02) probably_damaging(0.915) TCGA-IB-7651-01 18 30349761 30349761 C T KLHL14 Missense_Mutation p.R265H 0.18 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 18 30350152 30350152 G T KLHL14 Missense_Mutation p.L135M 0.18 deleterious(0) possibly_damaging(0.478) TCGA-IB-7651-01 18 30350182 30350182 G A KLHL14 Silent p.L125L 0.17 TCGA-IB-7651-01 18 31324318 31324318 C T ASXL3 Silent p.G1502G 0.18 TCGA-IB-7651-01 18 31325027 31325027 C T ASXL3 Missense_Mutation p.R1739C 0.16 probably_damaging(0.999) TCGA-IB-7651-01 18 31326314 31326314 G A ASXL3 Missense_Mutation p.A2168T 0.20 benign(0.029) TCGA-IB-7651-01 18 31463241 31463241 C G NOL4 Missense_Mutation p.G564R 0.06 deleterious(0.03) benign(0.361) TCGA-IB-7651-01 18 31523032 31523032 C T NOL4 Silent p.Q513Q 0.19 TCGA-IB-7651-01 18 31537445 31537445 G A NOL4 Nonsense_Mutation p.R425* 0.14 TCGA-IB-7651-01 18 3154969 3154969 G T MYOM1 Missense_Mutation p.P540H 0.19 deleterious(0.01) benign(0.232) TCGA-IB-7651-01 18 3173962 3173962 G T MYOM1 Missense_Mutation p.A383D 0.16 deleterious(0.02) benign(0.104) TCGA-IB-7651-01 18 320021 320021 C T COLEC12 3'UTR 0.15 TCGA-IB-7651-01 18 32446182 32446182 A G DTNA Intron 0.13 TCGA-IB-7651-01 18 32681940 32681940 C T MAPRE2 Missense_Mutation p.R143C 0.16 deleterious(0) benign(0.009) TCGA-IB-7651-01 18 32720277 32720277 C T MAPRE2 Missense_Mutation p.P310S 0.14 tolerated(0.72) unknown(0) TCGA-IB-7651-01 18 32917607 32917607 G A ZNF24 Silent p.T232T 0.17 TCGA-IB-7651-01 18 32920370 32920370 C A ZNF24 Missense_Mutation p.R82M 0.09 deleterious(0) possibly_damaging(0.803) TCGA-IB-7651-01 18 32954273 32954273 C T ZNF396 5'UTR 0.19 TCGA-IB-7651-01 18 33060428 33060428 G A INO80C Missense_Mutation p.P122S 0.17 tolerated(0.07) possibly_damaging(0.858) TCGA-IB-7651-01 18 33234660 33234660 G T GALNT1 Missense_Mutation p.A12S 0.17 tolerated(0.19) benign(0.394) TCGA-IB-7651-01 18 335154 335154 C A COLEC12 Missense_Mutation p.Q468H 0.18 deleterious(0) unknown(0) TCGA-IB-7651-01 18 335176 335176 C T COLEC12 Missense_Mutation p.G461D 0.16 deleterious(0) unknown(0) TCGA-IB-7651-01 18 33557545 33557545 G A C18orf21 Missense_Mutation p.S158N 0.19 tolerated(0.12) possibly_damaging(0.897) TCGA-IB-7651-01 18 33689468 33689468 G A SLC39A6 3'UTR 0.17 TCGA-IB-7651-01 18 33795562 33795562 G A MOCOS Silent p.S473S 0.16 TCGA-IB-7651-01 18 33935590 33935590 G A FHOD3 Missense_Mutation p.G85D 0.14 deleterious(0.02) probably_damaging(0.989) TCGA-IB-7651-01 18 34205676 34205676 G A FHOD3 Missense_Mutation p.S387N 0.08 tolerated(0.36) benign(0.014) TCGA-IB-7651-01 18 34289191 34289191 A G FHOD3 Silent p.A615A 0.18 TCGA-IB-7651-01 18 34310720 34310720 G A FHOD3 Missense_Mutation p.A1002T 0.08 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 18 34385438 34385438 G A TPGS2 Missense_Mutation p.A94V 0.18 tolerated(1) benign(0.002) TCGA-IB-7651-01 18 34802046 34802046 C T KIAA1328 Silent p.R530R 0.14 TCGA-IB-7651-01 18 34802090 34802090 G A KIAA1328 Missense_Mutation p.R545Q 0.13 tolerated(0.41) benign(0.001) TCGA-IB-7651-01 18 34839169 34839169 C T CELF4 Silent p.E436E 0.17 TCGA-IB-7651-01 18 34853000 34853000 C T CELF4 Missense_Mutation p.A310T 0.17 tolerated(0.93) possibly_damaging(0.747) TCGA-IB-7651-01 18 3502408 3502408 G A DLGAP1 Intron 0.23 TCGA-IB-7651-01 18 3581922 3581922 C A DLGAP1 Missense_Mutation p.R639M 0.20 tolerated(0.13) possibly_damaging(0.49) TCGA-IB-7651-01 18 3814267 3814267 G A DLGAP1 Nonsense_Mutation p.Q322* 0.17 TCGA-IB-7651-01 18 3879744 3879744 G A DLGAP1 Missense_Mutation p.R109W 0.19 deleterious(0) possibly_damaging(0.794) TCGA-IB-7651-01 18 39620653 39620653 T G PIK3C3 Missense_Mutation p.F684C 0.17 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 18 39623705 39623705 T A PIK3C3 Missense_Mutation p.F704L 0.20 tolerated(0.79) benign(0.05) TCGA-IB-7651-01 18 39629655 39629655 C T PIK3C3 Intron 0.14 TCGA-IB-7651-01 18 40695488 40695488 A G RIT2 5'UTR 0.18 TCGA-IB-7651-01 18 40853651 40853651 A C SYT4 Missense_Mutation p.F248C 0.20 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 18 40853833 40853833 C T SYT4 Silent p.S187S 0.22 TCGA-IB-7651-01 18 40857350 40857350 C T SYT4 5'UTR 0.22 TCGA-IB-7651-01 18 42531860 42531860 C T SETBP1 Missense_Mutation p.T852M 0.14 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 18 42643106 42643106 C T SETBP1 Missense_Mutation p.R1412W 0.15 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 18 43224100 43224100 C T SLC14A2 Silent p.S442S 0.16 TCGA-IB-7651-01 18 43262376 43262376 G T SLC14A2 Silent p.P885P 0.18 TCGA-IB-7651-01 18 43432401 43432401 G T EPG5 3'UTR 0.14 TCGA-IB-7651-01 18 43438734 43438734 C A EPG5 Missense_Mutation p.Q2341H 0.19 deleterious(0.02) probably_damaging(0.932) TCGA-IB-7651-01 18 43450702 43450702 G A EPG5 Silent p.L2019L 0.18 TCGA-IB-7651-01 18 43508880 43508880 G A EPG5 Silent p.S836S 0.17 TCGA-IB-7651-01 18 43529485 43529485 C T EPG5 Missense_Mutation p.A488T 0.22 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 18 43669671 43669671 G A ATP5A1 Nonsense_Mutation p.R171* 0.17 TCGA-IB-7651-01 18 43819968 43819968 T C C18orf25 Intron 0.20 TCGA-IB-7651-01 18 43842923 43842923 A T C18orf25 Missense_Mutation p.S352C 0.16 probably_damaging(0.999) TCGA-IB-7651-01 18 44259991 44259991 C A ST8SIA5 3'UTR 0.22 TCGA-IB-7651-01 18 44260001 44260001 G A ST8SIA5 3'UTR 0.09 TCGA-IB-7651-01 18 44260357 44260357 C T ST8SIA5 Missense_Mutation p.R260H 0.12 probably_damaging(1) TCGA-IB-7651-01 18 44336397 44336397 G A ST8SIA5 Silent p.A25A 0.15 TCGA-IB-7651-01 18 44470643 44470643 C A PIAS2 Missense_Mutation p.Q133H 0.19 tolerated(0.17) possibly_damaging(0.781) TCGA-IB-7651-01 18 44470901 44470901 G A PIAS2 Silent p.S47S 0.12 TCGA-IB-7651-01 18 44549187 44549187 G A TCEB3CL Missense_Mutation p.T371M 0.03 deleterious(0) possibly_damaging(0.603) TCGA-IB-7651-01 18 44549200 44549200 G T TCEB3CL Missense_Mutation p.L367M 0.03 deleterious(0.01) probably_damaging(0.961) TCGA-IB-7651-01 18 44559411 44559411 G A TCEB3B Missense_Mutation p.A742V 0.16 deleterious(0) probably_damaging(0.969) TCGA-IB-7651-01 18 44561072 44561072 C T TCEB3B Silent p.A188A 0.17 TCGA-IB-7651-01 18 44561733 44561733 G A TCEB3B 5'UTR 0.15 TCGA-IB-7651-01 18 44635003 44635003 C T HDHD2 3'UTR 0.21 TCGA-IB-7651-01 18 44662797 44662797 C T HDHD2 Missense_Mutation p.R5H 0.15 tolerated(0.1) benign(0.005) TCGA-IB-7651-01 18 46145986 46145986 G A CTIF Missense_Mutation p.R17H 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IB-7651-01 18 46448083 46448083 G A SMAD7 Missense_Mutation p.R314W 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 18 46448237 46448237 G A SMAD7 Silent p.C262C 0.15 TCGA-IB-7651-01 18 46808509 46808509 A T DYM Missense_Mutation p.F328Y 0.16 deleterious(0) probably_damaging(0.963) TCGA-IB-7651-01 18 46812850 46812850 C T DYM Silent p.A300A 0.19 TCGA-IB-7651-01 18 47091750 47091750 G A LIPG Missense_Mutation p.R54H 0.19 deleterious(0.02) benign(0.081) TCGA-IB-7651-01 18 47101920 47101920 C T LIPG Silent p.G251G 0.19 TCGA-IB-7651-01 18 47110052 47110052 G T LIPG Missense_Mutation p.K428N 0.23 tolerated(0.2) benign(0.026) TCGA-IB-7651-01 18 47110060 47110060 G A LIPG Missense_Mutation p.R431H 0.18 tolerated(0.06) benign(0.082) TCGA-IB-7651-01 18 47363197 47363197 C T MYO5B Missense_Mutation p.A1733T 0.12 deleterious(0.01) probably_damaging(0.933) TCGA-IB-7651-01 18 47363955 47363955 G A MYO5B Silent p.N1690N 0.21 TCGA-IB-7651-01 18 47373547 47373547 G A MYO5B Silent p.D1476D 0.09 TCGA-IB-7651-01 18 47390710 47390710 T C MYO5B Missense_Mutation p.D1215G 0.17 deleterious(0.01) benign(0.333) TCGA-IB-7651-01 18 47398552 47398552 G T MYO5B Silent p.A1196A 0.03 TCGA-IB-7651-01 18 47429162 47429162 C T MYO5B Silent p.V871V 0.23 TCGA-IB-7651-01 18 47500787 47500787 G A MYO5B Missense_Mutation p.H419Y 0.05 tolerated(0.12) possibly_damaging(0.723) TCGA-IB-7651-01 18 47753730 47753730 G T CCDC11 3'UTR 0.16 TCGA-IB-7651-01 18 47787442 47787442 C T CCDC11 Silent p.Q155Q 0.18 TCGA-IB-7651-01 18 47806310 47806310 C T MBD1 Missense_Mutation p.R18H 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 18 47808840 47808840 C T CXXC1 3'UTR 0.20 TCGA-IB-7651-01 18 47809894 47809894 C T CXXC1 Missense_Mutation p.R526H 0.17 deleterious(0.01) probably_damaging(0.991) TCGA-IB-7651-01 18 47811382 47811382 T A CXXC1 Missense_Mutation p.D301V 0.21 tolerated(0.08) probably_damaging(0.996) TCGA-IB-7651-01 18 47911724 47911724 G A SKA1 Splice_Site p.X150_splice 0.14 TCGA-IB-7651-01 18 480749 480749 C T COLEC12 Missense_Mutation p.A6T 0.20 tolerated(0.09) possibly_damaging(0.821) TCGA-IB-7651-01 18 48255532 48255532 C T MAPK4 Missense_Mutation p.P358S 0.16 tolerated(0.37) benign(0.039) TCGA-IB-7651-01 18 48255600 48255600 C T MAPK4 Silent p.R380R 0.09 TCGA-IB-7651-01 18 48446897 48446897 A G ME2 Missense_Mutation p.Y269C 0.24 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 18 48447034 48447034 C T ME2 Missense_Mutation p.T283I 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 18 48473571 48473571 A C ME2 3'UTR 0.21 TCGA-IB-7651-01 18 48604665 48604665 G A SMAD4 Missense_Mutation p.R496H 0.24 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 18 48703596 48703596 G A MEX3C Missense_Mutation p.P369S 0.20 deleterious(0.02) probably_damaging(0.986) TCGA-IB-7651-01 18 48703868 48703868 A G MEX3C Missense_Mutation p.V278A 0.19 deleterious(0) probably_damaging(0.981) TCGA-IB-7651-01 18 48703873 48703873 A C MEX3C Missense_Mutation p.I276M 0.20 deleterious(0) probably_damaging(0.932) TCGA-IB-7651-01 18 50278519 50278519 G A DCC Missense_Mutation p.A63T 0.17 deleterious(0.03) benign(0.094) TCGA-IB-7651-01 18 50592518 50592518 C A DCC Missense_Mutation p.L415I 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 18 51686244 51686244 C T MBD2 Missense_Mutation p.R380H 0.13 deleterious(0) probably_damaging(0.969) TCGA-IB-7651-01 18 51686260 51686260 G A MBD2 Nonsense_Mutation p.R375* 0.12 TCGA-IB-7651-01 18 51715256 51715256 T G MBD2 Missense_Mutation p.E276D 0.17 tolerated(0.37) benign(0.039) TCGA-IB-7651-01 18 51750412 51750412 C T MBD2 Missense_Mutation p.G173D 0.09 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 18 51807102 51807102 C T POLI Missense_Mutation p.R209W 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 18 51851195 51851195 C T STARD6 Missense_Mutation p.G177E 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 18 51851233 51851233 A G STARD6 Silent p.Y164Y 0.17 TCGA-IB-7651-01 18 51889266 51889266 T C C18orf54 Missense_Mutation p.S239P 0.17 deleterious(0.03) benign(0.192) TCGA-IB-7651-01 18 51898889 51898889 A G C18orf54 Silent p.Q299Q 0.04 TCGA-IB-7651-01 18 52571495 52571495 G T CCDC68 3'UTR 0.23 TCGA-IB-7651-01 18 52901874 52901874 C A TCF4 Missense_Mutation p.S566I 0.14 deleterious(0.01) possibly_damaging(0.514) TCGA-IB-7651-01 18 5290889 5290889 C T ZBTB14 Missense_Mutation p.E440K 0.19 tolerated_low_confidence(0.09) possibly_damaging(0.636) TCGA-IB-7651-01 18 53018198 53018198 G T TCF4 Missense_Mutation p.P238T 0.16 deleterious(0.01) benign(0.022) TCGA-IB-7651-01 18 53303063 53303063 A C TCF4 Missense_Mutation p.I22M 0.15 deleterious_low_confidence(0) unknown(0) TCGA-IB-7651-01 18 53303155 53303155 G A TCF4 5'UTR 0.26 TCGA-IB-7651-01 18 5415823 5415823 C A EPB41L3 Missense_Mutation p.E687D 0.24 tolerated(0.08) benign(0.101) TCGA-IB-7651-01 18 54281785 54281785 C T TXNL1 Missense_Mutation p.R202Q 0.16 tolerated(0.06) benign(0.034) TCGA-IB-7651-01 18 54293455 54293455 A C TXNL1 Intron 0.20 TCGA-IB-7651-01 18 54385226 54385226 C T WDR7 Missense_Mutation p.A537V 0.18 deleterious(0) possibly_damaging(0.659) TCGA-IB-7651-01 18 54547231 54547231 C T WDR7 Missense_Mutation p.R1121W 0.15 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 18 55103370 55103370 G T ONECUT2 Missense_Mutation p.G141V 0.14 deleterious(0.02) possibly_damaging(0.892) TCGA-IB-7651-01 18 55315895 55315895 C T ATP8B1 Missense_Mutation p.R1194Q 0.22 tolerated(0.24) benign(0.033) TCGA-IB-7651-01 18 55362414 55362414 A G ATP8B1 Missense_Mutation p.V310A 0.19 deleterious(0) possibly_damaging(0.73) TCGA-IB-7651-01 18 55365052 55365052 C T ATP8B1 Missense_Mutation p.R201H 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 18 55998025 55998025 C T NEDD4L Missense_Mutation p.A290V 0.15 tolerated(0.32) benign(0.027) TCGA-IB-7651-01 18 56184276 56184276 C T ALPK2 Missense_Mutation p.R1935H 0.10 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 18 56246527 56246527 G A ALPK2 Missense_Mutation p.T494I 0.20 tolerated(0.17) benign(0.081) TCGA-IB-7651-01 18 56585789 56585789 T C ZNF532 Silent p.H90H 0.17 TCGA-IB-7651-01 18 56586899 56586899 G A ZNF532 Silent p.T460T 0.14 TCGA-IB-7651-01 18 56615358 56615358 G A ZNF532 Missense_Mutation p.R922H 0.16 deleterious(0.05) possibly_damaging(0.836) TCGA-IB-7651-01 18 56651207 56651207 C T ZNF532 Missense_Mutation p.P1139S 0.16 tolerated(0.33) benign(0.206) TCGA-IB-7651-01 18 56964052 56964052 C T CPLX4 Missense_Mutation p.D121N 0.17 tolerated(0.28) benign(0.438) TCGA-IB-7651-01 18 57115222 57115222 G A CCBE1 Silent p.G256G 0.18 TCGA-IB-7651-01 18 57115301 57115301 C T CCBE1 Missense_Mutation p.G230D 0.21 tolerated(0.05) probably_damaging(0.957) TCGA-IB-7651-01 18 58038647 58038647 G A MC4R Silent p.T312T 0.18 TCGA-IB-7651-01 18 580753 580753 C T CETN1 Silent p.D115D 0.14 TCGA-IB-7651-01 18 5891977 5891977 C T TMEM200C Missense_Mutation p.R29Q 0.23 deleterious(0) probably_damaging(0.968) TCGA-IB-7651-01 18 59217362 59217362 C T CDH20 Silent p.D600D 0.19 TCGA-IB-7651-01 18 59221564 59221564 C T CDH20 Missense_Mutation p.A681V 0.17 tolerated(0.15) possibly_damaging(0.902) TCGA-IB-7651-01 18 59483459 59483459 C T RNF152 Missense_Mutation p.A80T 0.14 tolerated(0.59) benign(0.002) TCGA-IB-7651-01 18 5956210 5956210 G T L3MBTL4 3'UTR 0.10 TCGA-IB-7651-01 18 5969448 5969448 G A L3MBTL4 Missense_Mutation p.L529F 0.10 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 18 59899598 59899598 A G KIAA1468 Missense_Mutation p.M520V 0.21 tolerated(0.97) benign(0.016) TCGA-IB-7651-01 18 59966089 59966089 C T KIAA1468 Nonsense_Mutation p.Q1176* 0.16 TCGA-IB-7651-01 18 60025520 60025520 C T TNFRSF11A Missense_Mutation p.A156V 0.17 tolerated(0.55) benign(0.004) TCGA-IB-7651-01 18 60029018 60029018 C T TNFRSF11A Missense_Mutation p.A241V 0.18 tolerated(0.47) benign(0.021) TCGA-IB-7651-01 18 60563230 60563230 A C PHLPP1 Missense_Mutation p.K810N 0.17 deleterious(0.02) probably_damaging(0.954) TCGA-IB-7651-01 18 60642662 60642662 G A PHLPP1 Missense_Mutation p.G1263D 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 18 60645587 60645587 C T PHLPP1 Silent p.S1359S 0.20 TCGA-IB-7651-01 18 60646154 60646154 C T PHLPP1 Silent p.D1548D 0.16 TCGA-IB-7651-01 18 60985916 60985916 G T BCL2 5'UTR 0.20 TCGA-IB-7651-01 18 61018225 61018225 C T KDSR Missense_Mutation p.V169M 0.17 tolerated(0.05) benign(0.378) TCGA-IB-7651-01 18 61058275 61058275 G T VPS4B Missense_Mutation p.P423H 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 18 61231236 61231236 G T SERPINB12 Missense_Mutation p.K176N 0.16 deleterious(0.02) possibly_damaging(0.694) TCGA-IB-7651-01 18 61261692 61261692 G T SERPINB13 Missense_Mutation p.K192N 0.13 tolerated(0.2) benign(0.186) TCGA-IB-7651-01 18 61304818 61304818 C T SERPINB4 3'UTR 0.21 TCGA-IB-7651-01 18 61305075 61305075 C T SERPINB4 Missense_Mutation p.V351I 0.16 tolerated(0.58) benign(0.008) TCGA-IB-7651-01 18 61377552 61377552 T C SERPINB11 Missense_Mutation p.V42A 0.18 deleterious(0) benign(0.127) TCGA-IB-7651-01 18 61468118 61468118 G A SERPINB7 Missense_Mutation p.A206T 0.10 tolerated(0.17) benign(0.019) TCGA-IB-7651-01 18 61570589 61570589 C T SERPINB2 3'UTR 0.27 TCGA-IB-7651-01 18 61582747 61582747 G A SERPINB10 Translation_Start_Site p.M1? 0.04 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 18 61600360 61600360 G T SERPINB10 Missense_Mutation p.G238C 0.23 deleterious(0) probably_damaging(0.968) TCGA-IB-7651-01 18 61650907 61650907 G A SERPINB8 Silent p.E173E 0.18 TCGA-IB-7651-01 18 6263998 6263998 C T L3MBTL4 Nonsense_Mutation p.W56* 0.13 TCGA-IB-7651-01 18 6311654 6311654 T G L3MBTL4 Intron 0.18 TCGA-IB-7651-01 18 63547943 63547943 C T CDH7 Missense_Mutation p.A724V 0.19 tolerated(0.27) probably_damaging(0.991) TCGA-IB-7651-01 18 64172320 64172320 C T CDH19 Missense_Mutation p.R683K 0.17 deleterious(0.05) possibly_damaging(0.716) TCGA-IB-7651-01 18 65178608 65178608 C T DSEL Missense_Mutation p.E1090K 0.15 deleterious(0.04) probably_damaging(0.943) TCGA-IB-7651-01 18 65178816 65178816 C A DSEL Silent p.T1020T 0.20 TCGA-IB-7651-01 18 65178934 65178934 C A DSEL Missense_Mutation p.R981I 0.11 tolerated(0.1) benign(0.33) TCGA-IB-7651-01 18 670816 670816 C T TYMS Silent p.I227I 0.17 TCGA-IB-7651-01 18 672795 672795 A G ENOSF1 3'Flank 0.13 TCGA-IB-7651-01 18 672975 672975 T G TYMS Missense_Mutation p.I307S 0.15 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 18 673075 673075 C A ENOSF1 3'Flank 0.22 TCGA-IB-7651-01 18 673147 673147 C T TYMS 3'UTR 0.16 TCGA-IB-7651-01 18 67671277 67671277 T G RTTN 3'UTR 0.11 TCGA-IB-7651-01 18 67855345 67855345 A G RTTN Missense_Mutation p.M435T 0.20 tolerated(0.09) benign(0.076) TCGA-IB-7651-01 18 67992860 67992860 A C SOCS6 Missense_Mutation p.N319T 0.18 tolerated(0.59) benign(0.001) TCGA-IB-7651-01 18 6942058 6942058 C T LAMA1 3'UTR 0.18 TCGA-IB-7651-01 18 6943388 6943388 A G LAMA1 Missense_Mutation p.V2953A 0.18 tolerated(0.06) probably_damaging(1) TCGA-IB-7651-01 18 6947173 6947173 C T LAMA1 Missense_Mutation p.V2945M 0.16 deleterious(0.02) benign(0.428) TCGA-IB-7651-01 18 6948455 6948455 T C LAMA1 Missense_Mutation p.Y2886C 0.18 deleterious(0) probably_damaging(0.96) TCGA-IB-7651-01 18 7013955 7013955 G A LAMA1 Silent p.C1074C 0.19 TCGA-IB-7651-01 18 7034541 7034541 A G LAMA1 Missense_Mutation p.L663P 0.05 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 18 70417299 70417299 C A NETO1 Missense_Mutation p.Q513H 0.19 tolerated_low_confidence(0.07) benign(0.007) TCGA-IB-7651-01 18 70417673 70417673 C T NETO1 Missense_Mutation p.E389K 0.18 deleterious(0.01) possibly_damaging(0.751) TCGA-IB-7651-01 18 70461420 70461420 C T NETO1 Missense_Mutation p.E191K 0.17 deleterious(0) possibly_damaging(0.674) TCGA-IB-7651-01 18 70461430 70461430 T G NETO1 Missense_Mutation p.Q187H 0.18 deleterious(0.01) probably_damaging(0.974) TCGA-IB-7651-01 18 706481 706481 C T ENOSF1 Missense_Mutation p.G82D 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 18 71749238 71749238 T - FBXO15 Frame_Shift_Del p.N396Ifs*25 0.22 TCGA-IB-7651-01 18 71796836 71796836 C A FBXO15 Missense_Mutation p.G197C 0.17 tolerated(0.06) benign(0.126) TCGA-IB-7651-01 18 71822623 71822623 C T TIMM21 Silent p.C149C 0.20 TCGA-IB-7651-01 18 72187265 72187265 G A CNDP2 Missense_Mutation p.A464T 0.17 deleterious(0.01) benign(0.367) TCGA-IB-7651-01 18 72251904 72251904 G T CNDP1 3'UTR 0.18 TCGA-IB-7651-01 18 7231272 7231272 C T LRRC30 Missense_Mutation p.R46W 0.19 tolerated(0.07) possibly_damaging(0.739) TCGA-IB-7651-01 18 72343146 72343146 G A ZNF407 Silent p.S57S 0.19 TCGA-IB-7651-01 18 72353033 72353033 T C ZNF407 Missense_Mutation p.V1586A 0.21 deleterious(0) possibly_damaging(0.886) TCGA-IB-7651-01 18 72775296 72775296 C T ZNF407 Silent p.D1873D 0.23 TCGA-IB-7651-01 18 72775354 72775354 C T ZNF407 Silent p.L1893L 0.12 TCGA-IB-7651-01 18 72913911 72913911 G A ZADH2 Silent p.C198C 0.09 TCGA-IB-7651-01 18 72997452 72997452 C T TSHZ1 5'UTR 0.15 TCGA-IB-7651-01 18 72998525 72998525 C T TSHZ1 Missense_Mutation p.P343L 0.15 tolerated(0.27) benign(0.236) TCGA-IB-7651-01 18 72999114 72999114 G T TSHZ1 Missense_Mutation p.Q539H 0.15 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 18 72999799 72999799 A G TSHZ1 Missense_Mutation p.T768A 0.16 deleterious(0) probably_damaging(0.97) TCGA-IB-7651-01 18 73122827 73122827 C T SMIM21 Missense_Mutation p.A100T 0.20 possibly_damaging(0.682) TCGA-IB-7651-01 18 74090972 74090972 G T ZNF516 Missense_Mutation p.A1033D 0.15 deleterious(0.01) benign(0.142) TCGA-IB-7651-01 18 74091237 74091237 C T ZNF516 Missense_Mutation p.A945T 0.16 tolerated(0.51) benign(0.014) TCGA-IB-7651-01 18 74091857 74091857 C T ZNF516 Missense_Mutation p.R738K 0.16 tolerated(0.55) benign(0.005) TCGA-IB-7651-01 18 74153437 74153437 C T ZNF516 Missense_Mutation p.R525H 0.13 deleterious(0) probably_damaging(0.95) TCGA-IB-7651-01 18 74154150 74154150 C T ZNF516 Silent p.E287E 0.12 TCGA-IB-7651-01 18 74154335 74154335 C T ZNF516 Missense_Mutation p.A226T 0.24 tolerated(0.14) possibly_damaging(0.856) TCGA-IB-7651-01 18 74154528 74154528 C T ZNF516 Silent p.E161E 0.22 TCGA-IB-7651-01 18 74154645 74154645 C T ZNF516 Silent p.S122S 0.26 TCGA-IB-7651-01 18 74155050 74155050 C A ZNF516 5'UTR 0.17 TCGA-IB-7651-01 18 74561610 74561610 G A ZNF236 Missense_Mutation p.E60K 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 18 74620380 74620380 A C ZNF236 Missense_Mutation p.E799A 0.17 tolerated(0.2) benign(0.097) TCGA-IB-7651-01 18 74649280 74649280 C T ZNF236 Missense_Mutation p.T1586I 0.19 deleterious(0.05) probably_damaging(0.917) TCGA-IB-7651-01 18 74700865 74700865 T C RP11-862L9.3 3'Flank 0.15 TCGA-IB-7651-01 18 74962940 74962940 C A GALR1 Missense_Mutation p.L146I 0.18 tolerated(0.52) benign(0.004) TCGA-IB-7651-01 18 756664 756664 C A YES1 Missense_Mutation p.S55I 0.17 tolerated(0.06) benign(0.161) TCGA-IB-7651-01 18 76757124 76757124 C T SALL3 Silent p.N1235N 0.20 TCGA-IB-7651-01 18 77037156 77037156 G T ATP9B Missense_Mutation p.E457D 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 18 77090061 77090061 C T ATP9B Missense_Mutation p.A662V 0.14 tolerated(1) benign(0.001) TCGA-IB-7651-01 18 77133958 77133958 C T ATP9B Missense_Mutation p.A1044V 0.17 deleterious(0) benign(0.389) TCGA-IB-7651-01 18 77170796 77170796 C T NFATC1 Missense_Mutation p.A161V 0.19 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 18 77171307 77171307 C A NFATC1 Silent p.P331P 0.16 TCGA-IB-7651-01 18 77171438 77171438 C T NFATC1 Missense_Mutation p.A375V 0.22 tolerated(0.84) benign(0.21) TCGA-IB-7651-01 18 77193710 77193710 C T NFATC1 Missense_Mutation p.A440V 0.24 deleterious(0) probably_damaging(0.952) TCGA-IB-7651-01 18 77246678 77246678 G A NFATC1 Silent p.S828S 0.17 TCGA-IB-7651-01 18 77287542 77287542 C T NFATC1 Nonsense_Mutation p.R920* 0.08 TCGA-IB-7651-01 18 77513682 77513682 C T CTDP1 Silent p.D926D 0.21 TCGA-IB-7651-01 18 77659147 77659147 C T KCNG2 Silent p.C244C 0.15 TCGA-IB-7651-01 18 77659170 77659170 A T KCNG2 Missense_Mutation p.N252I 0.19 deleterious(0) possibly_damaging(0.779) TCGA-IB-7651-01 18 77659486 77659486 C T KCNG2 Silent p.P357P 0.12 TCGA-IB-7651-01 18 77659752 77659752 G A KCNG2 Missense_Mutation p.G446D 0.20 tolerated(0.6) benign(0.002) TCGA-IB-7651-01 18 77679208 77679208 C T PQLC1 Missense_Mutation p.R195H 0.18 tolerated(0.19) benign(0.022) TCGA-IB-7651-01 18 77796699 77796699 G T RBFA Missense_Mutation p.G64C 0.17 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 18 77798535 77798535 C T RBFA Nonsense_Mutation p.R137* 0.08 TCGA-IB-7651-01 18 77896474 77896474 G T ADNP2 Missense_Mutation p.D1060Y 0.16 deleterious(0) probably_damaging(0.983) TCGA-IB-7651-01 18 77896614 77896614 G T ADNP2 Missense_Mutation p.K1106N 0.20 deleterious(0) probably_damaging(0.933) TCGA-IB-7651-01 18 7888369 7888369 T G PTPRM Missense_Mutation p.F154L 0.13 tolerated(0.63) benign(0.311) TCGA-IB-7651-01 18 7926650 7926650 G T PTPRM Missense_Mutation p.R211M 0.15 deleterious(0) possibly_damaging(0.538) TCGA-IB-7651-01 18 8069961 8069961 C A PTPRM Missense_Mutation p.S470R 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 18 8113534 8113534 C T PTPRM Missense_Mutation p.T636M 0.18 tolerated(0.05) possibly_damaging(0.765) TCGA-IB-7651-01 18 8244161 8244161 C T PTPRM Silent p.C802C 0.17 TCGA-IB-7651-01 18 8252488 8252488 C T PTPRM Missense_Mutation p.P853S 0.13 tolerated(0.07) benign(0.031) TCGA-IB-7651-01 18 8380330 8380330 C T PTPRM Missense_Mutation p.H1275Y 0.15 deleterious(0.05) probably_damaging(0.999) TCGA-IB-7651-01 18 8406243 8406243 C A PTPRM 3'UTR 0.18 TCGA-IB-7651-01 18 8783729 8783729 C T SOGA2 Silent p.L207L 0.16 TCGA-IB-7651-01 18 8813213 8813213 C T SOGA2 Silent p.F947F 0.14 TCGA-IB-7651-01 18 8819017 8819017 C T SOGA2 Silent p.D972D 0.21 TCGA-IB-7651-01 18 9255009 9255009 C T ANKRD12 Missense_Mutation p.R582W 0.18 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-IB-7651-01 18 9359999 9359999 C T TWSG1 Silent p.G51G 0.19 TCGA-IB-7651-01 18 9513171 9513171 G A RALBP1 Missense_Mutation p.R43H 0.18 tolerated(0.13) benign(0.137) TCGA-IB-7651-01 18 9535870 9535870 C T RALBP1 Missense_Mutation p.P635S 0.21 tolerated_low_confidence(0.4) benign(0.003) TCGA-IB-7651-01 18 9559502 9559502 C T PPP4R1 Missense_Mutation p.S648N 0.19 tolerated(0.05) probably_damaging(0.935) TCGA-IB-7651-01 18 9570435 9570435 T G PPP4R1 Missense_Mutation p.K431N 0.18 tolerated(0.43) benign(0.001) TCGA-IB-7651-01 18 9886595 9886595 T C TXNDC2 Missense_Mutation p.L40S 0.19 deleterious(0.01) possibly_damaging(0.519) TCGA-IB-7651-01 18 9887884 9887884 C T TXNDC2 Silent p.L470L 0.23 TCGA-IB-7651-01 18 9888089 9888089 G A TXNDC2 Missense_Mutation p.C538Y 0.14 deleterious(0.02) probably_damaging(0.972) TCGA-IB-7651-01 19 1005022 1005022 C A GRIN3B Missense_Mutation p.L508M 0.19 tolerated(0.11) benign(0.42) TCGA-IB-7651-01 19 10081698 10081698 C A COL5A3 Missense_Mutation p.D1279Y 0.16 unknown(0) TCGA-IB-7651-01 19 10091784 10091784 C T COL5A3 Missense_Mutation p.E829K 0.21 unknown(0) TCGA-IB-7651-01 19 10100162 10100162 C T COL5A3 Missense_Mutation p.G677R 0.20 unknown(0) TCGA-IB-7651-01 19 1011428 1011428 C T TMEM259 Nonsense_Mutation p.W385* 0.18 TCGA-IB-7651-01 19 10114292 10114292 C A COL5A3 Missense_Mutation p.K266N 0.17 unknown(0) TCGA-IB-7651-01 19 10129521 10129521 T G RDH8 Missense_Mutation p.L146R 0.23 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 19 10132384 10132384 C T RDH8 Silent p.L319L 0.21 TCGA-IB-7651-01 19 1014397 1014397 C T TMEM259 Missense_Mutation p.V101M 0.13 deleterious(0.01) possibly_damaging(0.596) TCGA-IB-7651-01 19 10160702 10160702 C A C3P1 RNA 0.17 TCGA-IB-7651-01 19 10166279 10166279 T A C3P1 RNA 0.09 TCGA-IB-7651-01 19 10200693 10200693 C A C19orf66 Silent p.V118V 0.14 TCGA-IB-7651-01 19 10205540 10205540 C T ANGPTL6 Missense_Mutation p.M219I 0.20 tolerated(0.46) benign(0.013) TCGA-IB-7651-01 19 10224727 10224727 C A PPAN-P2RY11 Silent p.A566A 0.13 TCGA-IB-7651-01 19 10225213 10225213 C T PPAN-P2RY11 Silent p.G728G 0.16 TCGA-IB-7651-01 19 10225276 10225276 C T PPAN-P2RY11 Silent p.G749G 0.16 TCGA-IB-7651-01 19 10225426 10225426 G A PPAN-P2RY11 3'Flank 0.20 TCGA-IB-7651-01 19 1032601 1032601 G A CNN2 Missense_Mutation p.G99D 0.17 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 19 10395085 10395085 C T ICAM1 Missense_Mutation p.P311L 0.20 tolerated(0.15) benign(0.179) TCGA-IB-7651-01 19 10402269 10402269 C T ICAM5 Missense_Mutation p.L153F 0.05 deleterious(0) possibly_damaging(0.854) TCGA-IB-7651-01 19 1041388 1041388 C T ABCA7 Silent p.L10L 0.18 TCGA-IB-7651-01 19 1042089 1042089 G A ABCA7 Missense_Mutation p.R110H 0.14 tolerated(0.23) benign(0) TCGA-IB-7651-01 19 10426620 10426620 G T FDX1L Missense_Mutation p.A18D 0.20 tolerated(0.21) benign(0.126) TCGA-IB-7651-01 19 1043053 1043053 G A ABCA7 Missense_Mutation p.R198H 0.15 tolerated(0.11) benign(0) TCGA-IB-7651-01 19 10434065 10434065 C T RAVER1 Missense_Mutation p.A329T 0.11 deleterious(0) benign(0.117) TCGA-IB-7651-01 19 10444592 10444592 G A ICAM3 Missense_Mutation p.P529S 0.08 deleterious(0.01) probably_damaging(0.957) TCGA-IB-7651-01 19 1046243 1046243 G A ABCA7 Missense_Mutation p.G487D 0.04 deleterious(0.04) probably_damaging(0.979) TCGA-IB-7651-01 19 1046403 1046403 C T ABCA7 Silent p.D540D 0.08 TCGA-IB-7651-01 19 10472585 10472585 C T TYK2 Missense_Mutation p.R607H 0.18 tolerated(0.42) benign(0.026) TCGA-IB-7651-01 19 10502151 10502151 G A CDC37 3'UTR 0.05 TCGA-IB-7651-01 19 10505909 10505909 C A CDC37 Nonsense_Mutation p.E200* 0.08 TCGA-IB-7651-01 19 10506754 10506754 G A CDC37 Silent p.G76G 0.20 TCGA-IB-7651-01 19 10572664 10572664 G A PDE4A Missense_Mutation p.D578N 0.13 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 19 10599948 10599948 G A KEAP1 Missense_Mutation p.T543M 0.14 tolerated(0.23) benign(0.312) TCGA-IB-7651-01 19 10625429 10625429 C T S1PR5 Missense_Mutation p.A87T 0.13 deleterious(0.04) probably_damaging(0.968) TCGA-IB-7651-01 19 10657740 10657740 G A ATG4D Missense_Mutation p.G240D 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 19 10672384 10672384 C T KRI1 Silent p.S155S 0.20 TCGA-IB-7651-01 19 1068512 1068512 C T HMHA1 Missense_Mutation p.R80W 0.10 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 1074171 1074171 C T HMHA1 Silent p.L303L 0.17 TCGA-IB-7651-01 19 10746125 10746125 C T SLC44A2 Silent p.N389N 0.17 TCGA-IB-7651-01 19 10748582 10748582 C T SLC44A2 Silent p.F582F 0.09 TCGA-IB-7651-01 19 10781680 10781680 C T ILF3 Missense_Mutation p.R12C 0.18 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 19 10787961 10787961 A C ILF3 Missense_Mutation p.E178D 0.18 tolerated(0.12) probably_damaging(0.995) TCGA-IB-7651-01 19 10794144 10794144 C T ILF3 Missense_Mutation p.P597S 0.08 tolerated(0.6) benign(0.227) TCGA-IB-7651-01 19 1080691 1080691 G A HMHA1 Silent p.K657K 0.06 TCGA-IB-7651-01 19 1081636 1081636 G A HMHA1 Missense_Mutation p.G776S 0.16 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 19 10893745 10893745 G A DNM2 Silent p.R266R 0.17 TCGA-IB-7651-01 19 1089479 1089479 C T POLR2E 3'UTR 0.11 TCGA-IB-7651-01 19 1089931 1089931 G A POLR2E Silent p.I173I 0.16 TCGA-IB-7651-01 19 10934554 10934554 C T DNM2 Silent p.G624G 0.20 TCGA-IB-7651-01 19 1093977 1093977 G A POLR2E Missense_Mutation p.P53L 0.17 tolerated(0.5) benign(0.037) TCGA-IB-7651-01 19 10940946 10940946 G A DNM2 Missense_Mutation p.R812Q 0.19 deleterious_low_confidence(0.01) probably_damaging(0.921) TCGA-IB-7651-01 19 11019791 11019791 C A CARM1 Missense_Mutation p.L156M 0.17 deleterious(0.02) probably_damaging(0.988) TCGA-IB-7651-01 19 11024705 11024705 C T CARM1 Silent p.H274H 0.22 TCGA-IB-7651-01 19 11034236 11034236 G T YIPF2 Missense_Mutation p.L257M 0.20 tolerated(0.25) benign(0.314) TCGA-IB-7651-01 19 11034607 11034607 G A YIPF2 Missense_Mutation p.R185W 0.17 tolerated(0.21) benign(0.022) TCGA-IB-7651-01 19 1109544 1109544 C T SBNO2 Silent p.A1059A 0.13 TCGA-IB-7651-01 19 1109688 1109688 G T SBNO2 Missense_Mutation p.F1039L 0.08 tolerated(1) benign(0.001) TCGA-IB-7651-01 19 11105645 11105645 C T SMARCA4 Missense_Mutation p.R521W 0.18 probably_damaging(0.987) TCGA-IB-7651-01 19 11107017 11107017 C A SMARCA4 Silent p.A574A 0.19 TCGA-IB-7651-01 19 1112468 1112468 G A SBNO2 Silent p.N816N 0.18 TCGA-IB-7651-01 19 1112481 1112481 C T SBNO2 Missense_Mutation p.R812H 0.17 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 19 1112516 1112516 C A SBNO2 Missense_Mutation p.E800D 0.15 deleterious(0) benign(0.231) TCGA-IB-7651-01 19 11134266 11134266 C T SMARCA4 Nonsense_Mutation p.R978* 0.19 TCGA-IB-7651-01 19 11152114 11152114 C T SMARCA4 Silent p.D1434D 0.19 TCGA-IB-7651-01 19 11170476 11170476 G A SMARCA4 Silent p.R1561R 0.19 TCGA-IB-7651-01 19 11170509 11170509 C T SMARCA4 Silent p.G1572G 0.22 TCGA-IB-7651-01 19 11172628 11172628 T G SMARCA4 3'UTR 0.12 TCGA-IB-7651-01 19 1119096 1119096 G T SBNO2 Missense_Mutation p.L481I 0.27 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 11303796 11303796 C T KANK2 Silent p.P320P 0.12 TCGA-IB-7651-01 19 11326479 11326479 C T DOCK6 Missense_Mutation p.R1340H 0.14 deleterious(0.01) possibly_damaging(0.762) TCGA-IB-7651-01 19 11361633 11361633 C A DOCK6 Nonsense_Mutation p.E213* 0.15 TCGA-IB-7651-01 19 11436108 11436108 G T RAB3D Missense_Mutation p.A209D 0.23 tolerated(0.56) benign(0.017) TCGA-IB-7651-01 19 11447893 11447893 G A RAB3D Silent p.V61V 0.19 TCGA-IB-7651-01 19 11465331 11465331 C T CCDC159 Missense_Mutation p.S283F 0.15 tolerated_low_confidence(0.71) benign(0.011) TCGA-IB-7651-01 19 11492692 11492692 G A EPOR Missense_Mutation p.T114M 0.23 deleterious(0.01) possibly_damaging(0.819) TCGA-IB-7651-01 19 11492759 11492759 G A EPOR Missense_Mutation p.R92C 0.24 tolerated(0.05) possibly_damaging(0.762) TCGA-IB-7651-01 19 11531430 11531430 C T CCDC151 3'UTR 0.24 TCGA-IB-7651-01 19 11534583 11534583 C T CCDC151 Missense_Mutation p.G360D 0.04 tolerated(0.37) benign(0.007) TCGA-IB-7651-01 19 11534691 11534691 C T CCDC151 Missense_Mutation p.R324H 0.18 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 19 11557939 11557939 C T PRKCSH Silent p.R271R 0.20 TCGA-IB-7651-01 19 11560084 11560084 C T PRKCSH Missense_Mutation p.R482C 0.16 deleterious(0) probably_damaging(0.956) TCGA-IB-7651-01 19 11568960 11568960 G A ELAVL3 Missense_Mutation p.T210M 0.19 tolerated(0.13) benign(0.056) TCGA-IB-7651-01 19 11660678 11660678 G A CNN1 3'UTR 0.17 TCGA-IB-7651-01 19 11664626 11664626 C A ELOF1 Splice_Site p.X63_splice 0.21 TCGA-IB-7651-01 19 11685724 11685724 G A ACP5 3'UTR 0.26 TCGA-IB-7651-01 19 11727652 11727652 G T ZNF627 Missense_Mutation p.G112C 0.13 tolerated(0.21) benign(0.002) TCGA-IB-7651-01 19 11727882 11727882 G A ZNF627 Silent p.T188T 0.18 TCGA-IB-7651-01 19 11795746 11795746 C T ZNF833P RNA 0.15 TCGA-IB-7651-01 19 11796008 11796008 A T ZNF833P RNA 0.19 TCGA-IB-7651-01 19 11832603 11832603 C T ZNF823 Silent p.L582L 0.20 TCGA-IB-7651-01 19 11877984 11877984 G T ZNF441 5'UTR 0.17 TCGA-IB-7651-01 19 11892674 11892674 G A ZNF441 Missense_Mutation p.A679T 0.19 tolerated(0.22) benign(0.053) TCGA-IB-7651-01 19 11917376 11917376 G A ZNF491 Missense_Mutation p.R203H 0.18 tolerated(0.11) benign(0.009) TCGA-IB-7651-01 19 11942469 11942469 A G ZNF440 Missense_Mutation p.R160G 0.18 deleterious(0.03) probably_damaging(0.934) TCGA-IB-7651-01 19 11943959 11943959 G A ZNF440 3'UTR 0.18 TCGA-IB-7651-01 19 11944520 11944520 A C ZNF440 3'UTR 0.20 TCGA-IB-7651-01 19 11979539 11979539 A C ZNF439 3'UTR 0.16 TCGA-IB-7651-01 19 12035948 12035948 C T ZNF763 5'UTR 0.19 TCGA-IB-7651-01 19 12059625 12059625 T C ZNF700 Silent p.S262S 0.15 TCGA-IB-7651-01 19 1206967 1206967 T C STK11 Missense_Mutation p.S19P 0.17 tolerated(0.07) benign(0.247) TCGA-IB-7651-01 19 12125671 12125671 C A ZNF433 Missense_Mutation p.D671Y 0.23 deleterious(0) benign(0.328) TCGA-IB-7651-01 19 12125782 12125782 G A ZNF433 Nonsense_Mutation p.R634* 0.19 TCGA-IB-7651-01 19 12154660 12154660 G A ZNF878 Missense_Mutation p.A519V 0.08 tolerated(0.51) benign(0) TCGA-IB-7651-01 19 12155662 12155662 G T ZNF878 Missense_Mutation p.S185Y 0.16 tolerated(0.42) benign(0.089) TCGA-IB-7651-01 19 12256281 12256281 T C ZNF625 Missense_Mutation p.H317R 0.17 deleterious(0.04) benign(0.006) TCGA-IB-7651-01 19 12273996 12273996 C A ZNF136 5'UTR 0.14 TCGA-IB-7651-01 19 12298401 12298401 C A ZNF136 Missense_Mutation p.S403Y 0.18 tolerated(1) benign(0.206) TCGA-IB-7651-01 19 12298499 12298499 C T ZNF136 Nonsense_Mutation p.R436* 0.18 TCGA-IB-7651-01 19 1235045 1235045 G A C19orf26 Missense_Mutation p.A137V 0.11 deleterious(0) probably_damaging(0.975) TCGA-IB-7651-01 19 12429836 12429836 G A ZNF563 Nonsense_Mutation p.R335* 0.17 TCGA-IB-7651-01 19 12491863 12491863 G T CTD-3105H18.14 3'UTR 0.21 TCGA-IB-7651-01 19 12541219 12541219 T C ZNF443 Silent p.E589E 0.19 TCGA-IB-7651-01 19 12542335 12542335 T G ZNF443 Missense_Mutation p.R217S 0.19 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 19 12543223 12543223 T G ZNF443 Missense_Mutation p.E53D 0.11 tolerated(0.07) benign(0.012) TCGA-IB-7651-01 19 12574913 12574913 C T ZNF709 Missense_Mutation p.R608Q 0.18 tolerated(0.05) possibly_damaging(0.893) TCGA-IB-7651-01 19 12575729 12575729 T C ZNF709 Missense_Mutation p.Y336C 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 19 12576512 12576512 T G ZNF709 Missense_Mutation p.E75A 0.23 deleterious(0.02) benign(0.001) TCGA-IB-7651-01 19 12638554 12638554 C A ZNF564 Missense_Mutation p.R123I 0.19 tolerated(0.06) possibly_damaging(0.549) TCGA-IB-7651-01 19 12691207 12691207 G A ZNF490 3'UTR 0.15 TCGA-IB-7651-01 19 12692016 12692016 C A ZNF490 Missense_Mutation p.Q291H 0.17 tolerated(0.08) benign(0.008) TCGA-IB-7651-01 19 12694290 12694290 G A ZNF490 Silent p.I81I 0.04 TCGA-IB-7651-01 19 12738624 12738624 C T ZNF791 Missense_Mutation p.T94I 0.19 tolerated(0.15) benign(0.051) TCGA-IB-7651-01 19 12739034 12739034 A T ZNF791 Missense_Mutation p.I231F 0.20 tolerated(0.33) possibly_damaging(0.521) TCGA-IB-7651-01 19 12784068 12784068 C T WDR83 Missense_Mutation p.R246C 0.17 deleterious(0.03) possibly_damaging(0.873) TCGA-IB-7651-01 19 12790297 12790297 C A DHPS Nonsense_Mutation p.E218* 0.18 TCGA-IB-7651-01 19 12800936 12800936 A T FBXW9 Intron 0.19 TCGA-IB-7651-01 19 12812936 12812936 G A TNPO2 Silent p.Y787Y 0.19 TCGA-IB-7651-01 19 12841751 12841751 C A C19orf43 3'UTR 0.21 TCGA-IB-7651-01 19 12842217 12842217 C T C19orf43 Missense_Mutation p.G122R 0.17 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 19 12863439 12863439 C T BEST2 Silent p.N11N 0.15 TCGA-IB-7651-01 19 12865583 12865583 C G BEST2 Missense_Mutation p.D155E 0.12 tolerated(0.32) benign(0.208) TCGA-IB-7651-01 19 12874073 12874073 G T HOOK2 3'UTR 0.18 TCGA-IB-7651-01 19 12874525 12874525 C A HOOK2 Missense_Mutation p.R632M 0.19 deleterious(0) possibly_damaging(0.893) TCGA-IB-7651-01 19 12881839 12881839 T C HOOK2 Missense_Mutation p.E270G 0.14 deleterious(0) benign(0.098) TCGA-IB-7651-01 19 12903500 12903500 C T JUNB Silent p.A305A 0.11 TCGA-IB-7651-01 19 12924273 12924273 G T RNASEH2A Missense_Mutation p.S298I 0.10 tolerated(0.17) benign(0.003) TCGA-IB-7651-01 19 12958425 12958425 G T MAST1 Splice_Site p.X163_splice 0.12 TCGA-IB-7651-01 19 12963203 12963203 C T MAST1 Silent p.L357L 0.16 TCGA-IB-7651-01 19 12977513 12977513 C T MAST1 Silent p.D692D 0.11 TCGA-IB-7651-01 19 13004378 13004378 C T GCDH Missense_Mutation p.S139L 0.10 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-IB-7651-01 19 13008537 13008537 C A GCDH Missense_Mutation p.S368Y 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-IB-7651-01 19 13054419 13054419 C T CALR Silent p.G343G 0.15 TCGA-IB-7651-01 19 13059574 13059574 G A RAD23A Missense_Mutation p.A183T 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 13192511 13192511 G T NFIX Missense_Mutation p.A366S 0.16 tolerated(0.9) benign(0.106) TCGA-IB-7651-01 19 13246051 13246051 G A NACC1 Silent p.P10P 0.17 TCGA-IB-7651-01 19 13246249 13246249 G T NACC1 Missense_Mutation p.Q76H 0.21 tolerated(0.08) benign(0.219) TCGA-IB-7651-01 19 13246954 13246954 C T NACC1 Silent p.N311N 0.16 TCGA-IB-7651-01 19 13256126 13256126 G A STX10 Silent p.I149I 0.20 TCGA-IB-7651-01 19 13325114 13325114 G T CACNA1A Missense_Mutation p.A1958D 0.13 possibly_damaging(0.82) TCGA-IB-7651-01 19 13345818 13345818 G A CACNA1A Silent p.D1722D 0.20 TCGA-IB-7651-01 19 13356068 13356068 G A CACNA1A Silent p.R1626R 0.14 TCGA-IB-7651-01 19 13370400 13370400 A G CACNA1A Missense_Mutation p.S1456P 0.22 possibly_damaging(0.82) TCGA-IB-7651-01 19 13410018 13410018 T C CACNA1A Missense_Mutation p.H810R 0.16 benign(0.261) TCGA-IB-7651-01 19 13419063 13419063 T C CACNA1A Missense_Mutation p.Y595C 0.17 probably_damaging(0.993) TCGA-IB-7651-01 19 13428040 13428040 G A CACNA1A Missense_Mutation p.R481C 0.18 probably_damaging(0.942) TCGA-IB-7651-01 19 13862583 13862583 C T CCDC130 5'UTR 0.19 TCGA-IB-7651-01 19 13869941 13869941 C T CCDC130 Missense_Mutation p.T143M 0.15 deleterious(0.04) possibly_damaging(0.513) TCGA-IB-7651-01 19 1391124 1391124 G A NDUFS7 Missense_Mutation p.D139N 0.24 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-IB-7651-01 19 13936465 13936465 A G ZSWIM4 Missense_Mutation p.T656A 0.20 tolerated(0.1) unknown(0) TCGA-IB-7651-01 19 13988311 13988311 C T NANOS3 Silent p.N83N 0.16 TCGA-IB-7651-01 19 13991485 13991485 G A NANOS3 3'Flank 0.17 TCGA-IB-7651-01 19 14000527 14000527 C A C19orf57 Missense_Mutation p.R381M 0.15 deleterious(0.01) benign(0.102) TCGA-IB-7651-01 19 14067054 14067054 A G DCAF15 Missense_Mutation p.D198G 0.18 tolerated(0.35) benign(0.046) TCGA-IB-7651-01 19 14071137 14071137 A G DCAF15 Missense_Mutation p.D522G 0.17 deleterious(0.01) possibly_damaging(0.547) TCGA-IB-7651-01 19 14080831 14080831 G T RFX1 Missense_Mutation p.L491M 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 14080949 14080949 G A RFX1 Silent p.G451G 0.17 TCGA-IB-7651-01 19 14200027 14200027 G A SAMD1 Missense_Mutation p.R262W 0.09 deleterious(0) possibly_damaging(0.853) TCGA-IB-7651-01 19 14231410 14231410 A G ASF1B Missense_Mutation p.M157T 0.14 tolerated(1) benign(0) TCGA-IB-7651-01 19 14266186 14266186 G A LPHN1 Silent p.C1098C 0.18 TCGA-IB-7651-01 19 14267880 14267880 C T LPHN1 Silent p.V946V 0.19 TCGA-IB-7651-01 19 14273951 14273951 T G LPHN1 Missense_Mutation p.N226T 0.20 deleterious(0.01) probably_damaging(0.985) TCGA-IB-7651-01 19 14501839 14501839 G A CD97 Silent p.E98E 0.13 TCGA-IB-7651-01 19 14517876 14517876 G A CD97 Silent p.A737A 0.08 TCGA-IB-7651-01 19 14521030 14521030 C T DDX39A Missense_Mutation p.D244N 0.19 tolerated(0.8) benign(0.001) TCGA-IB-7651-01 19 14554324 14554324 C T PKN1 Missense_Mutation p.A128V 0.18 tolerated(0.27) benign(0.127) TCGA-IB-7651-01 19 14568859 14568859 G A PKN1 Silent p.V400V 0.19 TCGA-IB-7651-01 19 14578761 14578761 C T PKN1 Missense_Mutation p.A659V 0.25 deleterious(0.01) possibly_damaging(0.718) TCGA-IB-7651-01 19 14593528 14593528 G A GIPC1 Silent p.A87A 0.21 TCGA-IB-7651-01 19 14626848 14626848 C A DNAJB1 Missense_Mutation p.E309D 0.19 tolerated(0.31) benign(0) TCGA-IB-7651-01 19 1465269 1465269 G A APC2 Missense_Mutation p.A657T 0.15 benign(0.032) TCGA-IB-7651-01 19 1466480 1466480 G A APC2 Silent p.A1060A 0.17 TCGA-IB-7651-01 19 1466897 1466897 C T APC2 Silent p.P1199P 0.16 TCGA-IB-7651-01 19 14676616 14676616 G A TECR Missense_Mutation p.R287H 0.17 tolerated(0.05) benign(0.082) TCGA-IB-7651-01 19 14676647 14676647 G A TECR Silent p.P297P 0.08 TCGA-IB-7651-01 19 1467872 1467872 G A APC2 Silent p.T1524T 0.20 TCGA-IB-7651-01 19 1467886 1467886 G A APC2 Missense_Mutation p.R1529H 0.13 benign(0.28) TCGA-IB-7651-01 19 14743812 14743812 A C EMR3 Missense_Mutation p.L522V 0.19 deleterious(0) benign(0.031) TCGA-IB-7651-01 19 14806443 14806443 G T ZNF333 Nonsense_Mutation p.E65* 0.16 TCGA-IB-7651-01 19 1483417 1483417 G A PCSK4 Silent p.C479C 0.23 TCGA-IB-7651-01 19 14846859 14846859 G A EMR2 3'UTR 0.22 TCGA-IB-7651-01 19 14863237 14863237 G T EMR2 Silent p.I564I 0.13 TCGA-IB-7651-01 19 1486949 1486949 C A PCSK4 Missense_Mutation p.S324I 0.19 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 19 1487861 1487861 C A PCSK4 Splice_Site p.X173_splice 0.21 TCGA-IB-7651-01 19 1488000 1488000 C A PCSK4 Missense_Mutation p.G160V 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 15063766 15063766 C T SLC1A6 Silent p.T491T 0.16 TCGA-IB-7651-01 19 15063833 15063833 G A SLC1A6 Missense_Mutation p.P469L 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 15065121 15065121 G A SLC1A6 Missense_Mutation p.T397I 0.19 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 19 1510959 1510959 A G ADAMTSL5 5'UTR 0.33 TCGA-IB-7651-01 19 15221544 15221544 C T SYDE1 Missense_Mutation p.R430W 0.23 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 15226130 15226130 C A ILVBL Missense_Mutation p.G611V 0.18 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 19 15233511 15233511 C T ILVBL Missense_Mutation p.V237I 0.18 tolerated(0.56) benign(0.002) TCGA-IB-7651-01 19 15271773 15271773 C T NOTCH3 Silent p.P2222P 0.18 TCGA-IB-7651-01 19 15276713 15276713 C T NOTCH3 Missense_Mutation p.R1851H 0.11 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 15284889 15284889 C T NOTCH3 Missense_Mutation p.E1576K 0.21 deleterious(0.01) possibly_damaging(0.864) TCGA-IB-7651-01 19 15291787 15291787 C T NOTCH3 Silent p.T993T 0.16 TCGA-IB-7651-01 19 15295262 15295262 C A NOTCH3 Splice_Site p.X804_splice 0.14 TCGA-IB-7651-01 19 15296115 15296115 C A NOTCH3 Missense_Mutation p.S750I 0.21 tolerated(0.26) benign(0.001) TCGA-IB-7651-01 19 15296201 15296201 C A NOTCH3 Missense_Mutation p.E721D 0.11 tolerated(0.96) benign(0.077) TCGA-IB-7651-01 19 15299878 15299878 C T NOTCH3 Missense_Mutation p.E434K 0.26 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 15342604 15342604 G A EPHX3 Silent p.H104H 0.17 TCGA-IB-7651-01 19 15349989 15349989 G A BRD4 Silent p.S1221S 0.07 TCGA-IB-7651-01 19 15364970 15364970 G A BRD4 Silent p.S717S 0.09 TCGA-IB-7651-01 19 15365050 15365050 C T BRD4 Missense_Mutation p.G691S 0.20 possibly_damaging(0.862) TCGA-IB-7651-01 19 15366169 15366169 G A BRD4 Silent p.S662S 0.05 TCGA-IB-7651-01 19 15383882 15383882 C A BRD4 Missense_Mutation p.R10I 0.11 unknown(0) TCGA-IB-7651-01 19 15484043 15484043 G A AKAP8 Silent p.S160S 0.16 TCGA-IB-7651-01 19 15511996 15511996 G A AKAP8L Missense_Mutation p.R261W 0.21 deleterious(0.01) possibly_damaging(0.824) TCGA-IB-7651-01 19 15533879 15533879 C A WIZ 3'UTR 0.14 TCGA-IB-7651-01 19 15535824 15535824 C A WIZ Missense_Mutation p.E543D 0.15 deleterious(0) probably_damaging(0.91) TCGA-IB-7651-01 19 15558986 15558986 G A WIZ Missense_Mutation p.R45W 0.18 deleterious_low_confidence(0) benign(0.119) TCGA-IB-7651-01 19 15580712 15580712 A G PGLYRP2 Missense_Mutation p.Y458H 0.19 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 19 15733064 15733064 C T CYP4F8 Intron 0.20 TCGA-IB-7651-01 19 1578415 1578415 G A MBD3 Missense_Mutation p.A267V 0.17 tolerated_low_confidence(0.08) probably_damaging(0.935) TCGA-IB-7651-01 19 15791299 15791299 G A CYP4F12 Silent p.T165T 0.15 TCGA-IB-7651-01 19 15794373 15794373 C A CYP4F12 Missense_Mutation p.L240I 0.19 tolerated(0.27) possibly_damaging(0.71) TCGA-IB-7651-01 19 15807727 15807727 C T CYP4F12 Silent p.I469I 0.20 TCGA-IB-7651-01 19 15852477 15852477 C T OR10H3 Missense_Mutation p.S92F 0.18 deleterious(0) possibly_damaging(0.541) TCGA-IB-7651-01 19 15852562 15852562 C T OR10H3 Silent p.G120G 0.18 TCGA-IB-7651-01 19 15918734 15918734 C T OR10H1 Silent p.T38T 0.19 TCGA-IB-7651-01 19 15918872 15918872 T C OR10H1 5'UTR 0.20 TCGA-IB-7651-01 19 15990189 15990189 G T CYP4F2 Missense_Mutation p.P455H 0.17 deleterious(0) possibly_damaging(0.616) TCGA-IB-7651-01 19 15990414 15990414 C A CYP4F2 Missense_Mutation p.E438D 0.14 deleterious(0.03) possibly_damaging(0.469) TCGA-IB-7651-01 19 15997079 15997079 C A CYP4F2 Missense_Mutation p.A320S 0.19 deleterious(0.01) possibly_damaging(0.469) TCGA-IB-7651-01 19 16000481 16000481 C T CYP4F2 Missense_Mutation p.A224T 0.19 tolerated(0.09) benign(0.19) TCGA-IB-7651-01 19 16034677 16034677 T G CYP4F11 Missense_Mutation p.K288T 0.20 deleterious(0.05) possibly_damaging(0.493) TCGA-IB-7651-01 19 1615576 1615576 C T TCF3 Intron 0.17 TCGA-IB-7651-01 19 16232605 16232605 C A RAB8A Nonsense_Mutation p.Y77* 0.18 TCGA-IB-7651-01 19 1625590 1625590 C T TCF3 Missense_Mutation p.A162T 0.22 tolerated(0.28) benign(0.033) TCGA-IB-7651-01 19 16314368 16314368 G A AP1M1 Silent p.S47S 0.15 TCGA-IB-7651-01 19 16339685 16339685 C T AP1M1 Silent p.S343S 0.22 TCGA-IB-7651-01 19 16611708 16611708 G T C19orf44 Missense_Mutation p.Q35H 0.08 tolerated(0.17) benign(0.005) TCGA-IB-7651-01 19 16612313 16612313 G A C19orf44 Missense_Mutation p.G237D 0.15 tolerated(0.22) probably_damaging(0.915) TCGA-IB-7651-01 19 16617541 16617541 G A C19orf44 Missense_Mutation p.G369S 0.08 deleterious(0.01) benign(0.019) TCGA-IB-7651-01 19 16623887 16623887 G A C19orf44 Missense_Mutation p.A568T 0.19 deleterious(0.02) probably_damaging(0.939) TCGA-IB-7651-01 19 16641582 16641582 G A CHERP Missense_Mutation p.R262W 0.18 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 19 16664348 16664348 C T SLC35E1 3'UTR 0.08 TCGA-IB-7651-01 19 16677435 16677435 G A SLC35E1 Silent p.L222L 0.18 TCGA-IB-7651-01 19 16687637 16687637 G A MED26 Missense_Mutation p.A335V 0.25 tolerated(0.52) benign(0.002) TCGA-IB-7651-01 19 16688235 16688235 G A MED26 Silent p.L136L 0.18 TCGA-IB-7651-01 19 16791297 16791297 T G TMEM38A Missense_Mutation p.V124G 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 16899861 16899861 C T NWD1 Silent p.L934L 0.22 TCGA-IB-7651-01 19 16905360 16905360 C T NWD1 Silent p.A1100A 0.12 TCGA-IB-7651-01 19 16926085 16926085 C T NWD1 3'UTR 0.12 TCGA-IB-7651-01 19 16977334 16977334 C T SIN3B Silent p.S623S 0.15 TCGA-IB-7651-01 19 16987345 16987345 C T SIN3B Silent p.L971L 0.20 TCGA-IB-7651-01 19 17001352 17001352 C A F2RL3 Missense_Mutation p.P360T 0.19 tolerated(0.09) benign(0.011) TCGA-IB-7651-01 19 17010326 17010326 T C CPAMD8 Missense_Mutation p.Y1650C 0.15 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 19 17132946 17132946 C A CPAMD8 Missense_Mutation p.E93D 0.28 tolerated(0.22) benign(0.073) TCGA-IB-7651-01 19 17343433 17343433 C T NR2F6 Missense_Mutation p.A315T 0.17 tolerated(0.25) probably_damaging(0.999) TCGA-IB-7651-01 19 17369103 17369103 C T USHBP1 Missense_Mutation p.A380T 0.19 deleterious(0.01) benign(0.11) TCGA-IB-7651-01 19 17373371 17373371 A G USHBP1 Missense_Mutation p.L211P 0.17 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 19 17373654 17373654 C A USHBP1 Missense_Mutation p.D117Y 0.22 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 19 17379674 17379674 C T BABAM1 Missense_Mutation p.S20L 0.27 tolerated_low_confidence(0.48) unknown(0) TCGA-IB-7651-01 19 17405187 17405187 G A ABHD8 Silent p.V353V 0.20 TCGA-IB-7651-01 19 17435885 17435885 G A ANO8 Missense_Mutation p.S991L 0.15 deleterious_low_confidence(0.02) unknown(0) TCGA-IB-7651-01 19 17443792 17443792 G A ANO8 Missense_Mutation p.A178V 0.19 deleterious(0.01) possibly_damaging(0.841) TCGA-IB-7651-01 19 17448962 17448962 G T GTPBP3 Missense_Mutation p.A67S 0.14 tolerated(0.32) benign(0.142) TCGA-IB-7651-01 19 17449816 17449816 G A GTPBP3 Silent p.E215E 0.17 TCGA-IB-7651-01 19 17450356 17450356 C T GTPBP3 Missense_Mutation p.R340W 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 17487909 17487909 G A PLVAP Silent p.T63T 0.21 TCGA-IB-7651-01 19 17516300 17516300 G A BST2 Silent p.L29L 0.17 TCGA-IB-7651-01 19 17581359 17581359 C T SLC27A1 Missense_Mutation p.P4S 0.20 tolerated_low_confidence(0.07) unknown(0) TCGA-IB-7651-01 19 17615330 17615330 G A SLC27A1 Missense_Mutation p.R617Q 0.18 tolerated(0.31) benign(0.002) TCGA-IB-7651-01 19 17628198 17628198 G T PGLS Missense_Mutation p.Q166H 0.10 deleterious(0.01) probably_damaging(0.927) TCGA-IB-7651-01 19 17648286 17648286 G T FAM129C Missense_Mutation p.A208S 0.20 tolerated(0.11) benign(0.228) TCGA-IB-7651-01 19 17692040 17692040 G A COLGALT1 Silent p.E552E 0.19 TCGA-IB-7651-01 19 17735744 17735744 T C UNC13A Missense_Mutation p.K1364R 0.18 deleterious(0.03) benign(0.134) TCGA-IB-7651-01 19 17751421 17751421 C T UNC13A Missense_Mutation p.V896I 0.17 deleterious(0.02) probably_damaging(0.987) TCGA-IB-7651-01 19 17752235 17752235 C T UNC13A Missense_Mutation p.R868H 0.18 deleterious(0) probably_damaging(0.952) TCGA-IB-7651-01 19 17756803 17756803 G A UNC13A Missense_Mutation p.P721L 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 17766716 17766716 G A UNC13A Missense_Mutation p.A420V 0.16 tolerated_low_confidence(0.21) benign(0) TCGA-IB-7651-01 19 17836832 17836832 C T MAP1S Silent p.Y213Y 0.26 TCGA-IB-7651-01 19 17837219 17837219 C T MAP1S Silent p.C342C 0.28 TCGA-IB-7651-01 19 17873639 17873639 G A FCHO1 Silent p.E32E 0.16 TCGA-IB-7651-01 19 17895033 17895033 C A FCHO1 Missense_Mutation p.L739M 0.25 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 17919059 17919059 G A B3GNT3 Missense_Mutation p.G148D 0.18 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 19 17937567 17937567 G T JAK3 Silent p.S1120S 0.17 TCGA-IB-7651-01 19 17937570 17937570 G A JAK3 Silent p.H1119H 0.20 TCGA-IB-7651-01 19 17943451 17943451 C T JAK3 Missense_Mutation p.A853T 0.20 deleterious(0) probably_damaging(0.977) TCGA-IB-7651-01 19 17945726 17945726 C T JAK3 Missense_Mutation p.G712S 0.10 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 19 17945947 17945947 C T JAK3 Silent p.P664P 0.16 TCGA-IB-7651-01 19 17946822 17946822 C A JAK3 Missense_Mutation p.D609Y 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 1796824 1796824 C T ATP8B3 Missense_Mutation p.A547T 0.20 tolerated(0.55) benign(0.309) TCGA-IB-7651-01 19 17973031 17973031 C A RPL18A Nonsense_Mutation p.C109* 0.14 TCGA-IB-7651-01 19 17988625 17988625 G A SLC5A5 Silent p.A264A 0.18 TCGA-IB-7651-01 19 17988836 17988836 C T SLC5A5 Silent p.I301I 0.09 TCGA-IB-7651-01 19 17991703 17991703 C T SLC5A5 Silent p.F333F 0.17 TCGA-IB-7651-01 19 18054174 18054174 G A CCDC124 Missense_Mutation p.A152T 0.16 tolerated(0.21) benign(0.124) TCGA-IB-7651-01 19 1805955 1805955 G A ATP8B3 Silent p.A251A 0.13 TCGA-IB-7651-01 19 18092875 18092875 C A KCNN1 Missense_Mutation p.L286M 0.24 deleterious(0.01) probably_damaging(0.946) TCGA-IB-7651-01 19 1811770 1811770 G A ATP8B3 5'UTR 0.19 TCGA-IB-7651-01 19 18119532 18119532 C T ARRDC2 Missense_Mutation p.T96I 0.15 tolerated(0.23) benign(0.003) TCGA-IB-7651-01 19 1819095 1819095 C T REXO1 Missense_Mutation p.V896M 0.20 tolerated(0.07) probably_damaging(0.991) TCGA-IB-7651-01 19 18239701 18239701 G A MAST3 Missense_Mutation p.R359Q 0.16 tolerated(0.16) benign(0.007) TCGA-IB-7651-01 19 18245404 18245404 G A MAST3 Silent p.S500S 0.28 TCGA-IB-7651-01 19 18249831 18249831 C T MAST3 Missense_Mutation p.S672L 0.10 deleterious(0.01) benign(0.006) TCGA-IB-7651-01 19 18249857 18249857 G A MAST3 Missense_Mutation p.E681K 0.11 deleterious(0.01) possibly_damaging(0.707) TCGA-IB-7651-01 19 18252741 18252741 C A MAST3 Missense_Mutation p.A723D 0.21 deleterious_low_confidence(0.04) benign(0.056) TCGA-IB-7651-01 19 18273018 18273018 C T PIK3R2 Missense_Mutation p.P303L 0.13 deleterious(0.02) possibly_damaging(0.465) TCGA-IB-7651-01 19 18279918 18279918 C A PIK3R2 Missense_Mutation p.H667Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 18285994 18285994 A T IFI30 Missense_Mutation p.I93F 0.18 deleterious(0) probably_damaging(0.985) TCGA-IB-7651-01 19 18305800 18305800 C T MPV17L2 Silent p.F156F 0.16 TCGA-IB-7651-01 19 18305857 18305857 G A MPV17L2 Silent p.T175T 0.20 TCGA-IB-7651-01 19 18311216 18311216 C T RAB3A Missense_Mutation p.A90T 0.16 deleterious(0.01) possibly_damaging(0.574) TCGA-IB-7651-01 19 18332977 18332977 C A PDE4C Missense_Mutation p.K133N 0.19 deleterious(0) benign(0.154) TCGA-IB-7651-01 19 18368859 18368859 C A KIAA1683 Missense_Mutation p.A1079S 0.03 tolerated(0.23) benign(0.113) TCGA-IB-7651-01 19 18391375 18391375 T C JUND Missense_Mutation p.N307S 0.21 deleterious(0) probably_damaging(0.911) TCGA-IB-7651-01 19 18420644 18420644 C T LSM4 Missense_Mutation p.E58K 0.16 deleterious(0.01) possibly_damaging(0.79) TCGA-IB-7651-01 19 18507051 18507051 G A LRRC25 Silent p.D241D 0.18 TCGA-IB-7651-01 19 18507290 18507290 C T LRRC25 Missense_Mutation p.A162T 0.22 tolerated(0.31) benign(0.001) TCGA-IB-7651-01 19 18538218 18538218 G A SSBP4 Silent p.Q39Q 0.21 TCGA-IB-7651-01 19 18541673 18541673 C A SSBP4 Missense_Mutation p.P101H 0.16 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 19 18547207 18547207 G A ISYNA1 Missense_Mutation p.T231M 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 19 18556055 18556055 C A ELL Missense_Mutation p.Q576H 0.17 deleterious(0) possibly_damaging(0.792) TCGA-IB-7651-01 19 18648447 18648447 C T FKBP8 Silent p.Q303Q 0.08 TCGA-IB-7651-01 19 18652785 18652785 C A FKBP8 5'UTR 0.18 TCGA-IB-7651-01 19 18710412 18710412 G A CRLF1 Silent p.D120D 0.23 TCGA-IB-7651-01 19 18710420 18710420 C T CRLF1 Missense_Mutation p.A118T 0.21 deleterious(0) benign(0.083) TCGA-IB-7651-01 19 18724703 18724703 G A TMEM59L Missense_Mutation p.E65K 0.18 tolerated(0.51) benign(0.002) TCGA-IB-7651-01 19 18724721 18724721 G A TMEM59L Missense_Mutation p.A71T 0.17 tolerated(0.07) probably_damaging(0.964) TCGA-IB-7651-01 19 18779809 18779809 G A KLHL26 Silent p.P534P 0.14 TCGA-IB-7651-01 19 1881373 1881373 G A ABHD17A Missense_Mutation p.R65C 0.13 deleterious(0) benign(0.048) TCGA-IB-7651-01 19 18885767 18885767 G A CRTC1 Missense_Mutation p.A511T 0.21 tolerated(0.12) probably_damaging(0.984) TCGA-IB-7651-01 19 18888081 18888081 C T CRTC1 Silent p.D614D 0.18 TCGA-IB-7651-01 19 18893930 18893930 G A COMP Missense_Mutation p.R721C 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 18901372 18901372 G A COMP Silent p.C72C 0.16 TCGA-IB-7651-01 19 18901411 18901411 G A COMP Silent p.I59I 0.16 TCGA-IB-7651-01 19 18990128 18990128 C A CERS1 Silent p.T274T 0.09 TCGA-IB-7651-01 19 19040219 19040219 G A HOMER3 3'UTR 0.20 TCGA-IB-7651-01 19 19129997 19129997 C T SUGP2 Missense_Mutation p.D591N 0.14 deleterious(0.02) benign(0.072) TCGA-IB-7651-01 19 19136015 19136016 - A SUGP2 Frame_Shift_Ins p.C381Lfs*19 0.18 TCGA-IB-7651-01 19 19136619 19136619 C T SUGP2 Missense_Mutation p.E180K 0.19 deleterious(0) possibly_damaging(0.791) TCGA-IB-7651-01 19 19136736 19136736 G A SUGP2 Missense_Mutation p.R141C 0.15 tolerated(0.16) possibly_damaging(0.634) TCGA-IB-7651-01 19 19162840 19162840 C T ARMC6 Missense_Mutation p.T230I 0.15 tolerated(0.14) benign(0.144) TCGA-IB-7651-01 19 19166187 19166187 G T ARMC6 Missense_Mutation p.Q379H 0.20 tolerated(0.14) benign(0.002) TCGA-IB-7651-01 19 19166660 19166660 C T ARMC6 Missense_Mutation p.R406C 0.19 deleterious(0.02) benign(0.022) TCGA-IB-7651-01 19 19168365 19168365 C T ARMC6 Silent p.A478A 0.20 TCGA-IB-7651-01 19 19221530 19221530 G A SLC25A42 Missense_Mutation p.A268T 0.24 tolerated(0.26) benign(0.067) TCGA-IB-7651-01 19 19308954 19308954 C T RFXANK Silent p.S159S 0.19 TCGA-IB-7651-01 19 19344688 19344688 G A NCAN Missense_Mutation p.G1037D 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 19351435 19351435 A G NCAN Missense_Mutation p.I1145V 0.09 deleterious(0.02) probably_damaging(0.968) TCGA-IB-7651-01 19 19375433 19375433 G A TM6SF2 3'UTR 0.10 TCGA-IB-7651-01 19 19389537 19389537 C T SUGP1 Missense_Mutation p.E533K 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 19391072 19391072 C A SUGP1 Missense_Mutation p.E424D 0.09 tolerated(0.14) possibly_damaging(0.554) TCGA-IB-7651-01 19 19454678 19454678 C T MAU2 Nonsense_Mutation p.Q336* 0.20 TCGA-IB-7651-01 19 19458130 19458130 C T MAU2 Silent p.N421N 0.16 TCGA-IB-7651-01 19 19465197 19465197 C T MAU2 Missense_Mutation p.L528F 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-IB-7651-01 19 19466686 19466686 C T MAU2 3'UTR 0.18 TCGA-IB-7651-01 19 19609351 19609351 G A GATAD2A Missense_Mutation p.A342T 0.23 deleterious(0.02) probably_damaging(0.994) TCGA-IB-7651-01 19 19625951 19625951 C A TSSK6 Missense_Mutation p.D96Y 0.14 deleterious(0) probably_damaging(0.983) TCGA-IB-7651-01 19 19626064 19626064 G A TSSK6 Missense_Mutation p.P58L 0.20 deleterious(0.02) benign(0.048) TCGA-IB-7651-01 19 19655592 19655592 C T CILP2 Silent p.N746N 0.16 TCGA-IB-7651-01 19 19675846 19675846 T C PBX4 Missense_Mutation p.K274R 0.20 deleterious(0.03) benign(0.323) TCGA-IB-7651-01 19 19737613 19737613 G A LPAR2 Silent p.L161L 0.28 TCGA-IB-7651-01 19 19767835 19767835 G A ATP13A1 Missense_Mutation p.R292W 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 19789533 19789533 A C ZNF101 Splice_Site p.X44_splice 0.22 TCGA-IB-7651-01 19 19790189 19790189 G A ZNF101 Missense_Mutation p.E131K 0.07 tolerated(0.05) benign(0.347) TCGA-IB-7651-01 19 19822954 19822954 C T ZNF14 Missense_Mutation p.R379Q 0.19 tolerated(0.93) probably_damaging(0.995) TCGA-IB-7651-01 19 1986857 1986857 A G BTBD2 Missense_Mutation p.V463A 0.17 tolerated(0.12) benign(0.104) TCGA-IB-7651-01 19 20116771 20116771 C T ZNF682 3'UTR 0.21 TCGA-IB-7651-01 19 20215098 20215098 G A ZNF90 Nonsense_Mutation p.W18* 0.17 TCGA-IB-7651-01 19 20229361 20229361 G T ZNF90 Missense_Mutation p.R333I 0.15 tolerated(0.5) benign(0.164) TCGA-IB-7651-01 19 2043157 2043157 G A MKNK2 Silent p.D153D 0.18 TCGA-IB-7651-01 19 2076822 2076822 C A MOB3A Missense_Mutation p.E204D 0.09 tolerated(0.07) benign(0.09) TCGA-IB-7651-01 19 2076839 2076839 G T MOB3A Missense_Mutation p.L199I 0.18 deleterious(0) possibly_damaging(0.778) TCGA-IB-7651-01 19 2078330 2078330 C A MOB3A Missense_Mutation p.G77V 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 20807526 20807526 G A ZNF626 Missense_Mutation p.T386M 0.17 deleterious(0.04) possibly_damaging(0.811) TCGA-IB-7651-01 19 20808152 20808152 T C ZNF626 Silent p.E177E 0.19 TCGA-IB-7651-01 19 20828123 20828123 G A ZNF626 Intron 0.18 TCGA-IB-7651-01 19 20976744 20976744 G A ZNF66 Intron 0.23 TCGA-IB-7651-01 19 2098087 2098087 G A IZUMO4 Missense_Mutation p.C145Y 0.18 deleterious(0) probably_damaging(0.983) TCGA-IB-7651-01 19 2099041 2099041 G T IZUMO4 Intron 0.09 TCGA-IB-7651-01 19 21106082 21106082 G A ZNF85 5'Flank 0.07 TCGA-IB-7651-01 19 21131671 21131671 C A ZNF85 Silent p.G117G 0.17 TCGA-IB-7651-01 19 21131956 21131956 C T ZNF85 Silent p.N212N 0.22 TCGA-IB-7651-01 19 21132044 21132044 T C ZNF85 Missense_Mutation p.S242P 0.15 tolerated(0.13) benign(0.007) TCGA-IB-7651-01 19 21132125 21132125 C T ZNF85 Nonsense_Mutation p.R269* 0.18 TCGA-IB-7651-01 19 21132513 21132513 A G ZNF85 Missense_Mutation p.Y398C 0.10 deleterious(0.03) possibly_damaging(0.777) TCGA-IB-7651-01 19 21132849 21132849 A G ZNF85 Missense_Mutation p.Y510C 0.18 deleterious(0.02) possibly_damaging(0.56) TCGA-IB-7651-01 19 2116654 2116654 G A AP3D1 Missense_Mutation p.R651W 0.21 deleterious(0.01) possibly_damaging(0.894) TCGA-IB-7651-01 19 21205649 21205649 G A ZNF430 Missense_Mutation p.A20T 0.04 tolerated_low_confidence(0.16) benign(0.054) TCGA-IB-7651-01 19 2121030 2121030 C T AP3D1 Missense_Mutation p.A438T 0.16 deleterious(0) possibly_damaging(0.742) TCGA-IB-7651-01 19 2121812 2121812 T C AP3D1 Missense_Mutation p.H341R 0.18 deleterious(0) possibly_damaging(0.791) TCGA-IB-7651-01 19 21239790 21239790 A G ZNF430 Missense_Mutation p.I226V 0.20 tolerated(0.06) benign(0.304) TCGA-IB-7651-01 19 21240602 21240602 A C ZNF430 Missense_Mutation p.Q496H 0.18 tolerated(0.77) benign(0.003) TCGA-IB-7651-01 19 21476283 21476283 C T ZNF708 Silent p.K495K 0.23 TCGA-IB-7651-01 19 21476977 21476977 G A ZNF708 Missense_Mutation p.S264F 0.08 tolerated(0.31) benign(0.018) TCGA-IB-7651-01 19 21492088 21492088 G T ZNF708 Silent p.P62P 0.13 TCGA-IB-7651-01 19 21512020 21512020 G T ZNF708 5'UTR 0.17 TCGA-IB-7651-01 19 21605913 21605913 G T ZNF493 Missense_Mutation p.S151I 0.19 deleterious(0.04) possibly_damaging(0.735) TCGA-IB-7651-01 19 21719209 21719209 A C ZNF429 Missense_Mutation p.K118N 0.15 deleterious(0.01) possibly_damaging(0.552) TCGA-IB-7651-01 19 21720670 21720670 C T ZNF429 Silent p.S605S 0.23 TCGA-IB-7651-01 19 21909803 21909803 A C ZNF100 Silent p.A437A 0.19 TCGA-IB-7651-01 19 21910465 21910465 G A ZNF100 Missense_Mutation p.L217F 0.16 tolerated(0.32) possibly_damaging(0.878) TCGA-IB-7651-01 19 21933953 21933953 G T ZNF100 Intron 0.21 TCGA-IB-7651-01 19 21991035 21991035 C T ZNF43 Missense_Mutation p.A602T 0.16 tolerated(0.15) possibly_damaging(0.787) TCGA-IB-7651-01 19 22154655 22154655 C T ZNF208 Missense_Mutation p.E1061K 0.18 deleterious(0.04) benign(0.213) TCGA-IB-7651-01 19 22155498 22155498 C T ZNF208 Missense_Mutation p.E780K 0.08 tolerated(0.75) benign(0.27) TCGA-IB-7651-01 19 22156630 22156630 A G ZNF208 Silent p.C402C 0.12 TCGA-IB-7651-01 19 2226809 2226809 C T DOT1L Missense_Mutation p.A1430V 0.18 tolerated_low_confidence(0.06) probably_damaging(0.987) TCGA-IB-7651-01 19 2226885 2226885 G A DOT1L Silent p.A1455A 0.23 TCGA-IB-7651-01 19 22270975 22270975 G T ZNF257 Missense_Mutation p.Q141H 0.18 tolerated(0.14) benign(0.005) TCGA-IB-7651-01 19 2229844 2229844 G A DOT1L 3'UTR 0.21 TCGA-IB-7651-01 19 22363338 22363338 T G ZNF676 Missense_Mutation p.K394T 0.13 deleterious(0.05) probably_damaging(0.999) TCGA-IB-7651-01 19 22363492 22363492 C T ZNF676 Missense_Mutation p.G343R 0.12 deleterious(0) probably_damaging(0.972) TCGA-IB-7651-01 19 22363697 22363697 A G ZNF676 Silent p.I274I 0.17 TCGA-IB-7651-01 19 2247848 2247848 C A SF3A2 Missense_Mutation p.P233H 0.10 deleterious_low_confidence(0.03) unknown(0) TCGA-IB-7651-01 19 2249555 2249555 C T AMH Missense_Mutation p.A75V 0.21 tolerated(0.35) benign(0.001) TCGA-IB-7651-01 19 2255205 2255205 C A JSRP1 Missense_Mutation p.A37S 0.16 tolerated(0.06) benign(0.021) TCGA-IB-7651-01 19 22574893 22574893 C A ZNF98 Nonsense_Mutation p.E382* 0.12 TCGA-IB-7651-01 19 2276371 2276371 C T C19orf35 Missense_Mutation p.G244R 0.17 tolerated(0.12) benign(0.421) TCGA-IB-7651-01 19 2280862 2280862 C T C19orf35 Silent p.T23T 0.21 TCGA-IB-7651-01 19 22817139 22817139 G A ZNF492 5'UTR 0.19 TCGA-IB-7651-01 19 22846684 22846685 - A ZNF492 Frame_Shift_Ins p.C74Mfs*4 0.17 TCGA-IB-7651-01 19 22847367 22847367 A C ZNF492 Missense_Mutation p.H299P 0.15 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 19 22847667 22847667 G A ZNF492 Missense_Mutation p.G399D 0.11 deleterious(0.03) probably_damaging(0.973) TCGA-IB-7651-01 19 22847718 22847718 C A ZNF492 Missense_Mutation p.T416N 0.07 deleterious(0) benign(0.035) TCGA-IB-7651-01 19 22847814 22847814 C A ZNF492 Missense_Mutation p.P448H 0.07 deleterious(0.02) probably_damaging(0.985) TCGA-IB-7651-01 19 22941527 22941527 T G ZNF99 Missense_Mutation p.K395T 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 23299823 23299823 C T ZNF730 5'UTR 0.22 TCGA-IB-7651-01 19 23299923 23299923 C T ZNF730 5'UTR 0.17 TCGA-IB-7651-01 19 23318771 23318771 A G ZNF730 Missense_Mutation p.D51G 0.17 deleterious(0.03) probably_damaging(0.958) TCGA-IB-7651-01 19 23329254 23329254 C T ZNF730 Missense_Mutation p.H470Y 0.20 deleterious(0.02) probably_damaging(0.925) TCGA-IB-7651-01 19 23329700 23329700 T G ZNF730 3'UTR 0.10 TCGA-IB-7651-01 19 2334702 2334702 G A AC004410.3 3'Flank 0.21 TCGA-IB-7651-01 19 23405909 23405909 T A ZNF724P Missense_Mutation p.T380S 0.19 tolerated(0.48) possibly_damaging(0.76) TCGA-IB-7651-01 19 23406790 23406790 C T ZNF724P Missense_Mutation p.R86Q 0.22 tolerated(0.06) benign(0) TCGA-IB-7651-01 19 23544948 23544948 G T ZNF91 Missense_Mutation p.S278Y 0.16 tolerated(0.59) possibly_damaging(0.689) TCGA-IB-7651-01 19 23545395 23545395 A G ZNF91 Missense_Mutation p.V129A 0.14 tolerated(0.52) benign(0.281) TCGA-IB-7651-01 19 23837503 23837503 A C ZNF675 Missense_Mutation p.C78G 0.09 deleterious(0.01) possibly_damaging(0.879) TCGA-IB-7651-01 19 23845935 23845935 G A ZNF675 Missense_Mutation p.A10V 0.18 tolerated(0.1) probably_damaging(0.918) TCGA-IB-7651-01 19 23869846 23869846 C T ZNF675 5'UTR 0.16 TCGA-IB-7651-01 19 23870004 23870004 C T ZNF675 5'UTR 0.18 TCGA-IB-7651-01 19 2389901 2389901 G A TMPRSS9 Missense_Mutation p.V40I 0.14 tolerated(0.87) benign(0.004) TCGA-IB-7651-01 19 23927387 23927387 G A ZNF681 Missense_Mutation p.S322F 0.16 tolerated(0.36) benign(0.011) TCGA-IB-7651-01 19 2399065 2399065 C T TMPRSS9 Nonsense_Mutation p.R96* 0.16 TCGA-IB-7651-01 19 24010369 24010369 G A RPSAP58 Missense_Mutation p.E136K 0.08 deleterious(0.02) probably_damaging(0.945) TCGA-IB-7651-01 19 2405479 2405479 C T TMPRSS9 Missense_Mutation p.H226Y 0.16 deleterious(0) probably_damaging(0.967) TCGA-IB-7651-01 19 24289407 24289407 G A ZNF254 Nonsense_Mutation p.W72* 0.08 TCGA-IB-7651-01 19 2435154 2435154 G A LMNB2 Missense_Mutation p.R234W 0.14 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 19 2515062 2515062 C T GNG7 Silent p.S55S 0.17 TCGA-IB-7651-01 19 2717235 2717235 G A DIRAS1 Silent p.R190R 0.08 TCGA-IB-7651-01 19 2717474 2717474 C T DIRAS1 Missense_Mutation p.V111M 0.13 tolerated(0.16) benign(0.127) TCGA-IB-7651-01 19 2717568 2717568 G A DIRAS1 Silent p.G79G 0.21 TCGA-IB-7651-01 19 2717589 2717589 C T DIRAS1 Silent p.Q72Q 0.24 TCGA-IB-7651-01 19 2717685 2717685 G A DIRAS1 Silent p.I40I 0.19 TCGA-IB-7651-01 19 2769007 2769007 C T SGTA Silent p.R20R 0.17 TCGA-IB-7651-01 19 2790603 2790603 G A THOP1 Silent p.A67A 0.10 TCGA-IB-7651-01 19 2794884 2794884 G A THOP1 Missense_Mutation p.V118M 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 2834613 2834613 C T ZNF554 Silent p.G460G 0.19 TCGA-IB-7651-01 19 2853592 2853592 G A ZNF555 Missense_Mutation p.C510Y 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 2876127 2876127 C T ZNF556 Missense_Mutation p.S56F 0.17 deleterious(0.02) probably_damaging(0.935) TCGA-IB-7651-01 19 2934085 2934085 C T ZNF77 Missense_Mutation p.S347N 0.20 tolerated(0.18) benign(0.217) TCGA-IB-7651-01 19 29698753 29698753 A G UQCRFS1 Missense_Mutation p.V176A 0.14 deleterious(0) probably_damaging(0.936) TCGA-IB-7651-01 19 2987962 2987962 G A TLE6 Missense_Mutation p.G231D 0.10 tolerated(0.36) benign(0.022) TCGA-IB-7651-01 19 2993462 2993462 C A TLE6 Missense_Mutation p.D473E 0.14 deleterious(0.03) probably_damaging(0.978) TCGA-IB-7651-01 19 3006594 3006594 C T TLE2 Missense_Mutation p.A442T 0.18 tolerated(0.13) benign(0.001) TCGA-IB-7651-01 19 3008916 3008916 G A TLE2 Nonsense_Mutation p.R401* 0.11 TCGA-IB-7651-01 19 3011123 3011123 G T TLE2 Silent p.S303S 0.17 TCGA-IB-7651-01 19 30193830 30193830 G A C19orf12 Missense_Mutation p.P83L 0.16 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 19 30199248 30199248 C T C19orf12 Missense_Mutation p.V36I 0.22 tolerated(0.24) benign(0.024) TCGA-IB-7651-01 19 30312955 30312955 A G CCNE1 Missense_Mutation p.Y253C 0.19 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 19 30313164 30313164 C A CCNE1 Silent p.V286V 0.18 TCGA-IB-7651-01 19 30313366 30313366 C T CCNE1 Silent p.C322C 0.18 TCGA-IB-7651-01 19 30503346 30503346 G T URI1 Nonsense_Mutation p.E445* 0.18 TCGA-IB-7651-01 19 308850 308850 C T MIER2 Missense_Mutation p.A354T 0.11 tolerated(0.89) benign(0.002) TCGA-IB-7651-01 19 30934897 30934897 G A ZNF536 Missense_Mutation p.S143N 0.19 deleterious(0) probably_damaging(0.985) TCGA-IB-7651-01 19 30935229 30935229 C T ZNF536 Missense_Mutation p.P254S 0.22 tolerated(0.27) benign(0.092) TCGA-IB-7651-01 19 30935664 30935664 C A ZNF536 Missense_Mutation p.L399M 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 19 31040060 31040060 C T ZNF536 Silent p.N1178N 0.20 TCGA-IB-7651-01 19 3119349 3119349 A C GNA11 Missense_Mutation p.E294A 0.19 deleterious(0.04) benign(0.113) TCGA-IB-7651-01 19 3121121 3121121 G A GNA11 Missense_Mutation p.A342T 0.18 tolerated(0.58) benign(0.165) TCGA-IB-7651-01 19 3148678 3148678 C T GNA15 Missense_Mutation p.R79W 0.21 deleterious(0.01) possibly_damaging(0.88) TCGA-IB-7651-01 19 3151773 3151773 G T GNA15 Missense_Mutation p.S185I 0.19 tolerated(0.12) benign(0.084) TCGA-IB-7651-01 19 31767496 31767496 G A TSHZ3 Missense_Mutation p.P1068L 0.21 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 31768179 31768179 G A TSHZ3 Silent p.R840R 0.22 TCGA-IB-7651-01 19 31770107 31770107 G A TSHZ3 Missense_Mutation p.R198W 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 3178948 3178948 C T S1PR4 Missense_Mutation p.S53L 0.23 tolerated(0.13) benign(0) TCGA-IB-7651-01 19 3179636 3179636 C T S1PR4 Silent p.A282A 0.09 TCGA-IB-7651-01 19 3192496 3192496 G A NCLN Silent p.E71E 0.20 TCGA-IB-7651-01 19 32874018 32874018 G A ZNF507 3'UTR 0.20 TCGA-IB-7651-01 19 32954831 32954831 G A DPY19L3 Missense_Mutation p.S501N 0.18 deleterious(0.04) benign(0.223) TCGA-IB-7651-01 19 33076792 33076792 A T PDCD5 Missense_Mutation p.R79S 0.18 deleterious(0.01) possibly_damaging(0.729) TCGA-IB-7651-01 19 33167833 33167833 C T RGS9BP Silent p.L222L 0.17 TCGA-IB-7651-01 19 33183175 33183175 G A NUDT19 Silent p.S103S 0.19 TCGA-IB-7651-01 19 33200284 33200284 T C NUDT19 Missense_Mutation p.V303A 0.16 deleterious(0) benign(0.194) TCGA-IB-7651-01 19 33202821 33202821 C T NUDT19 Silent p.H362H 0.16 TCGA-IB-7651-01 19 33321477 33321477 T C SLC7A9 3'UTR 0.17 TCGA-IB-7651-01 19 33355586 33355586 C T SLC7A9 Missense_Mutation p.V62M 0.18 deleterious(0.04) probably_damaging(0.989) TCGA-IB-7651-01 19 33355629 33355629 C T SLC7A9 Silent p.G47G 0.18 TCGA-IB-7651-01 19 33422197 33422197 C A CEP89 Intron 0.17 TCGA-IB-7651-01 19 33450866 33450866 C A CEP89 Missense_Mutation p.S82I 0.14 tolerated(0.07) benign(0.025) TCGA-IB-7651-01 19 33588747 33588747 C T GPATCH1 Silent p.D313D 0.15 TCGA-IB-7651-01 19 33647385 33647385 G T WDR88 Missense_Mutation p.A312S 0.10 tolerated(0.09) probably_damaging(0.995) TCGA-IB-7651-01 19 3366605 3366605 G A NFIC 5'UTR 0.21 TCGA-IB-7651-01 19 33696342 33696342 G A LRP3 Silent p.A222A 0.18 TCGA-IB-7651-01 19 33696652 33696652 T C LRP3 Missense_Mutation p.S326P 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-IB-7651-01 19 33701722 33701722 C A SLC7A10 Missense_Mutation p.A367S 0.20 tolerated(0.19) probably_damaging(0.973) TCGA-IB-7651-01 19 3381920 3381920 C T NFIC Missense_Mutation p.R81C 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 34263210 34263210 C T CHST8 Missense_Mutation p.R173C 0.20 deleterious(0.03) possibly_damaging(0.772) TCGA-IB-7651-01 19 34263465 34263465 C T CHST8 Missense_Mutation p.R258C 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 34263870 34263870 G A CHST8 Missense_Mutation p.A393T 0.20 tolerated(0.31) benign(0.022) TCGA-IB-7651-01 19 3452485 3452485 G A NFIC Missense_Mutation p.A364T 0.18 tolerated(0.09) benign(0.01) TCGA-IB-7651-01 19 34663663 34663663 C T LSM14A Missense_Mutation p.A39V 0.15 deleterious(0.01) benign(0.031) TCGA-IB-7651-01 19 34710328 34710328 C T LSM14A Missense_Mutation p.R272C 0.14 tolerated(0.06) benign(0.329) TCGA-IB-7651-01 19 34710699 34710699 C T LSM14A Silent p.A351A 0.20 TCGA-IB-7651-01 19 34791678 34791678 C A KIAA0355 Silent p.L100L 0.22 TCGA-IB-7651-01 19 34832959 34832959 C T KIAA0355 Missense_Mutation p.A707V 0.18 tolerated_low_confidence(0.18) benign(0.005) TCGA-IB-7651-01 19 34887303 34887303 G A GPI Missense_Mutation p.G398D 0.18 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-IB-7651-01 19 34925772 34925772 G T UBA2 Splice_Site p.X120_splice 0.38 TCGA-IB-7651-01 19 34957800 34957800 A G UBA2 Missense_Mutation p.D541G 0.13 tolerated(0.16) benign(0.214) TCGA-IB-7651-01 19 34991053 34991053 G T WTIP Missense_Mutation p.S391I 0.15 deleterious(0) probably_damaging(0.961) TCGA-IB-7651-01 19 35176198 35176198 A G ZNF302 3'UTR 0.19 TCGA-IB-7651-01 19 35233169 35233169 C T ZNF181 3'Flank 0.23 TCGA-IB-7651-01 19 35249888 35249888 C A ZNF599 3'UTR 0.18 TCGA-IB-7651-01 19 3534908 3534908 C A FZR1 3'Flank 0.21 TCGA-IB-7651-01 19 35435797 35435797 C T ZNF30 3'UTR 0.15 TCGA-IB-7651-01 19 35449350 35449350 C T ZNF792 Missense_Mutation p.R470Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 3547282 3547282 G A MFSD12 Silent p.C337C 0.13 TCGA-IB-7651-01 19 3547970 3547970 C T MFSD12 Missense_Mutation p.G238D 0.21 probably_damaging(0.996) TCGA-IB-7651-01 19 35501086 35501086 G A GRAMD1A Missense_Mutation p.R139H 0.04 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 19 35550662 35550662 C T HPN Silent p.N82N 0.20 TCGA-IB-7651-01 19 35616231 35616231 G T LGI4 Missense_Mutation p.L494M 0.22 deleterious(0.04) probably_damaging(0.99) TCGA-IB-7651-01 19 3576607 3576607 C A HMG20B Missense_Mutation p.F192L 0.24 deleterious(0) benign(0.338) TCGA-IB-7651-01 19 35836007 35836007 G T CD22 Missense_Mutation p.S729I 0.16 tolerated(0.06) probably_damaging(0.992) TCGA-IB-7651-01 19 35837493 35837493 G T CD22 Missense_Mutation p.D813Y 0.17 deleterious(0.01) probably_damaging(0.928) TCGA-IB-7651-01 19 35850667 35850667 G A FFAR3 Missense_Mutation p.R292K 0.20 tolerated(0.77) benign(0.005) TCGA-IB-7651-01 19 3586949 3586949 C T GIPC3 Silent p.S183S 0.19 TCGA-IB-7651-01 19 3595695 3595695 C T TBXA2R Intron 0.29 TCGA-IB-7651-01 19 3600484 3600484 G A TBXA2R Missense_Mutation p.A50V 0.12 tolerated(1) benign(0.035) TCGA-IB-7651-01 19 36029283 36029283 C A GAPDHS Missense_Mutation p.P107Q 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-IB-7651-01 19 36037431 36037431 C T TMEM147 Silent p.L51L 0.16 TCGA-IB-7651-01 19 36046143 36046143 C T ATP4A Missense_Mutation p.D751N 0.23 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 19 36050049 36050049 G A ATP4A Silent p.C367C 0.17 TCGA-IB-7651-01 19 36050771 36050771 G T ATP4A Missense_Mutation p.A331D 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 36053540 36053540 C T ATP4A Missense_Mutation p.G73S 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 36054338 36054338 C T ATP4A Missense_Mutation p.G35E 0.10 tolerated(1) benign(0) TCGA-IB-7651-01 19 36054427 36054427 C T ATP4A Silent p.E5E 0.20 TCGA-IB-7651-01 19 36106154 36106154 G T HAUS5 Missense_Mutation p.Q117H 0.15 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 19 36109545 36109545 G A HAUS5 Silent p.Q320Q 0.17 TCGA-IB-7651-01 19 36109792 36109792 G T HAUS5 Missense_Mutation p.Q340H 0.10 deleterious(0.02) probably_damaging(0.91) TCGA-IB-7651-01 19 36113851 36113851 C T HAUS5 Missense_Mutation p.R620C 0.18 deleterious(0) probably_damaging(0.983) TCGA-IB-7651-01 19 3611828 3611828 C T CACTIN 3'UTR 0.12 TCGA-IB-7651-01 19 36128403 36128403 C A RBM42 Missense_Mutation p.L464M 0.15 tolerated(0.32) unknown(0) TCGA-IB-7651-01 19 36134268 36134268 G T ETV2 Missense_Mutation p.G110C 0.20 deleterious(0) probably_damaging(0.962) TCGA-IB-7651-01 19 36166803 36166803 C T UPK1A Missense_Mutation p.A177V 0.09 tolerated(0.27) benign(0.004) TCGA-IB-7651-01 19 36168745 36168745 A G UPK1A Missense_Mutation p.D227G 0.08 tolerated(0.08) benign(0.007) TCGA-IB-7651-01 19 36205967 36205967 G T ZBTB32 Nonsense_Mutation p.E147* 0.16 TCGA-IB-7651-01 19 36212526 36212526 G T KMT2B Missense_Mutation p.Q759H 0.17 benign(0.113) TCGA-IB-7651-01 19 36216437 36216437 G A KMT2B Missense_Mutation p.E1234K 0.18 benign(0.439) TCGA-IB-7651-01 19 36220146 36220146 C T KMT2B Silent p.N1622N 0.23 TCGA-IB-7651-01 19 3624041 3624041 C T CACTIN Missense_Mutation p.R96Q 0.21 tolerated_low_confidence(0.12) unknown(0) TCGA-IB-7651-01 19 36245052 36245052 C T LIN37 Silent p.D193D 0.20 TCGA-IB-7651-01 19 36253018 36253018 C A C19orf55 Missense_Mutation p.S137Y 0.19 deleterious(0) probably_damaging(0.971) TCGA-IB-7651-01 19 36266542 36266542 C A ARHGAP33 5'UTR 0.23 TCGA-IB-7651-01 19 36278174 36278174 G A ARHGAP33 Missense_Mutation p.A742T 0.20 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-IB-7651-01 19 36332624 36332624 G A NPHS1 Silent p.V936V 0.13 TCGA-IB-7651-01 19 36339215 36339215 C T NPHS1 Missense_Mutation p.A419T 0.05 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 19 36339963 36339963 T G NPHS1 Missense_Mutation p.E309D 0.15 tolerated(0.08) possibly_damaging(0.631) TCGA-IB-7651-01 19 36348369 36348369 G A KIRREL2 Missense_Mutation p.A62T 0.20 deleterious(0) possibly_damaging(0.876) TCGA-IB-7651-01 19 36349719 36349719 C T KIRREL2 Silent p.L159L 0.18 TCGA-IB-7651-01 19 36351456 36351456 G A KIRREL2 Missense_Mutation p.R272H 0.21 tolerated(0.15) benign(0.017) TCGA-IB-7651-01 19 36355551 36355551 G A KIRREL2 Missense_Mutation p.G576D 0.23 tolerated(0.11) benign(0.196) TCGA-IB-7651-01 19 36360568 36360568 G T APLP1 Splice_Site p.X50_splice 0.27 TCGA-IB-7651-01 19 36362206 36362206 G T APLP1 Missense_Mutation p.M164I 0.18 deleterious(0) possibly_damaging(0.864) TCGA-IB-7651-01 19 36370460 36370460 T C APLP1 3'UTR 0.22 TCGA-IB-7651-01 19 36387361 36387361 G A NFKBID Missense_Mutation p.A113V 0.09 tolerated(0.09) probably_damaging(0.999) TCGA-IB-7651-01 19 36393393 36393393 C T HCST 5'UTR 0.20 TCGA-IB-7651-01 19 36435681 36435681 C A LRFN3 Silent p.A549A 0.20 TCGA-IB-7651-01 19 3644083 3644083 A G PIP5K1C Splice_Site p.X504_splice 0.17 TCGA-IB-7651-01 19 36499648 36499648 G T SYNE4 5'UTR 0.11 TCGA-IB-7651-01 19 36501912 36501912 G A ALKBH6 Missense_Mutation p.R102W 0.26 deleterious(0.01) probably_damaging(0.928) TCGA-IB-7651-01 19 36507083 36507083 G A CLIP3 Silent p.L541L 0.20 TCGA-IB-7651-01 19 36517067 36517067 G A CLIP3 Silent p.G221G 0.24 TCGA-IB-7651-01 19 36517490 36517490 C T CLIP3 Missense_Mutation p.R187Q 0.20 tolerated(0.29) benign(0.066) TCGA-IB-7651-01 19 36517509 36517509 G T CLIP3 Missense_Mutation p.L181M 0.14 deleterious(0.02) probably_damaging(0.93) TCGA-IB-7651-01 19 36590347 36590347 G A WDR62 Missense_Mutation p.R856H 0.17 tolerated(0.07) benign(0.071) TCGA-IB-7651-01 19 36636953 36636953 G A CAPNS1 Missense_Mutation p.A201T 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-IB-7651-01 19 36640861 36640861 C A CAPNS1 3'UTR 0.11 TCGA-IB-7651-01 19 36673443 36673443 G A ZNF565 Silent p.Y475Y 0.18 TCGA-IB-7651-01 19 36831798 36831798 C A ZFP14 Missense_Mutation p.K310N 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 19 36884325 36884325 G T ZFP82 Missense_Mutation p.A306D 0.17 deleterious(0.01) possibly_damaging(0.551) TCGA-IB-7651-01 19 37005025 37005025 G T ZNF260 Missense_Mutation p.F372L 0.17 tolerated(0.64) benign(0.391) TCGA-IB-7651-01 19 37117875 37117875 A C ZNF382 Missense_Mutation p.K359T 0.06 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 19 37118220 37118220 G A ZNF382 Missense_Mutation p.R474H 0.07 tolerated(0.08) probably_damaging(1) TCGA-IB-7651-01 19 37118250 37118250 G T ZNF382 Missense_Mutation p.R484I 0.17 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 19 371285 371285 C T THEG Missense_Mutation p.E225K 0.20 tolerated(0.11) benign(0.216) TCGA-IB-7651-01 19 37211001 37211001 C T ZNF567 Missense_Mutation p.R428C 0.18 tolerated(0.24) possibly_damaging(0.77) TCGA-IB-7651-01 19 37211114 37211114 C T ZNF567 Silent p.H465H 0.15 TCGA-IB-7651-01 19 37239046 37239046 T C ZNF850 Missense_Mutation p.T966A 0.26 tolerated(0.1) possibly_damaging(0.628) TCGA-IB-7651-01 19 37266959 37266959 C T CTD-2162K18.4 3'UTR 0.21 TCGA-IB-7651-01 19 372691 372691 C T THEG Missense_Mutation p.R192H 0.14 tolerated(0.31) benign(0.006) TCGA-IB-7651-01 19 3730576 3730576 G A TJP3 Missense_Mutation p.R171H 0.20 deleterious(0.04) benign(0.077) TCGA-IB-7651-01 19 37309616 37309616 T A ZNF790 Missense_Mutation p.I544F 0.22 tolerated(0.71) benign(0.276) TCGA-IB-7651-01 19 37310733 37310733 T C ZNF790 Silent p.E171E 0.20 TCGA-IB-7651-01 19 37368396 37368396 C T ZNF345 Missense_Mutation p.R222W 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 37368427 37368427 G A ZNF345 Missense_Mutation p.C232Y 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 37368905 37368905 C T ZNF345 Silent p.I391I 0.05 TCGA-IB-7651-01 19 37368910 37368910 C A ZNF345 Missense_Mutation p.T393N 0.18 deleterious(0.03) possibly_damaging(0.591) TCGA-IB-7651-01 19 37382434 37382434 C T ZNF829 Missense_Mutation p.R501H 0.18 tolerated(0.56) possibly_damaging(0.696) TCGA-IB-7651-01 19 37382697 37382697 G T ZNF829 Silent p.A413A 0.17 TCGA-IB-7651-01 19 37413686 37413686 C A ZNF568 Missense_Mutation p.S5Y 0.16 deleterious_low_confidence(0) benign(0) TCGA-IB-7651-01 19 37416155 37416155 C T ZNF568 Missense_Mutation p.P44S 0.18 tolerated(0.9) benign(0) TCGA-IB-7651-01 19 37427667 37427667 A T ZNF568 Missense_Mutation p.D52V 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 37440777 37440777 A G ZNF568 Missense_Mutation p.E241G 0.20 tolerated(0.05) benign(0.017) TCGA-IB-7651-01 19 37440779 37440779 C T ZNF568 Nonsense_Mutation p.R242* 0.20 TCGA-IB-7651-01 19 37441974 37441974 G T ZNF568 Missense_Mutation p.R640I 0.11 deleterious(0) benign(0.015) TCGA-IB-7651-01 19 3747908 3747908 C T TJP3 Silent p.G822G 0.16 TCGA-IB-7651-01 19 3753771 3753771 C T APBA3 Missense_Mutation p.A335T 0.22 deleterious(0.03) benign(0.008) TCGA-IB-7651-01 19 37618211 37618211 T G ZNF420 Nonsense_Mutation p.Y106* 0.17 TCGA-IB-7651-01 19 37618753 37618753 T C ZNF420 Missense_Mutation p.V287A 0.05 tolerated(1) benign(0.418) TCGA-IB-7651-01 19 3762792 3762792 G A MRPL54 Missense_Mutation p.A32T 0.11 tolerated(0.27) benign(0.022) TCGA-IB-7651-01 19 37644430 37644430 T C ZNF585A Missense_Mutation p.Y69C 0.20 deleterious(0) benign(0.31) TCGA-IB-7651-01 19 37677451 37677451 C T ZNF585B Missense_Mutation p.E330K 0.18 tolerated(0.06) possibly_damaging(0.648) TCGA-IB-7651-01 19 37677675 37677675 G T ZNF585B Missense_Mutation p.S255Y 0.17 deleterious(0.01) probably_damaging(0.949) TCGA-IB-7651-01 19 37721352 37721352 A C ZNF383 5'UTR 0.14 TCGA-IB-7651-01 19 37734379 37734379 G T ZNF383 Missense_Mutation p.R414I 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-IB-7651-01 19 37734418 37734418 G A ZNF383 Missense_Mutation p.C427Y 0.19 deleterious(0) probably_damaging(0.985) TCGA-IB-7651-01 19 3783843 3783843 A G MATK Missense_Mutation p.V185A 0.09 tolerated(0.61) benign(0.021) TCGA-IB-7651-01 19 3784220 3784220 G A MATK Silent p.R89R 0.20 TCGA-IB-7651-01 19 37880058 37880058 T G ZNF527 Silent p.R369R 0.16 TCGA-IB-7651-01 19 37916864 37916864 G T ZNF569 Silent p.G48G 0.21 TCGA-IB-7651-01 19 37966858 37966858 C T ZNF570 Missense_Mutation p.H37Y 0.18 tolerated(0.13) benign(0.329) TCGA-IB-7651-01 19 38028164 38028164 G T ZNF793 Missense_Mutation p.A202S 0.23 tolerated(0.74) benign(0.106) TCGA-IB-7651-01 19 38028553 38028553 A C ZNF793 Missense_Mutation p.K331N 0.14 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 19 38028593 38028593 G A ZNF793 Missense_Mutation p.G345R 0.15 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 19 38055485 38055485 A G ZNF571 3'UTR 0.18 TCGA-IB-7651-01 19 38103199 38103199 G A ZNF540 Missense_Mutation p.G340R 0.18 tolerated(0.19) possibly_damaging(0.633) TCGA-IB-7651-01 19 3813948 3813948 G A ZFR2 Silent p.T704T 0.20 TCGA-IB-7651-01 19 38188936 38188936 C T ZNF607 3'UTR 0.17 TCGA-IB-7651-01 19 38189413 38189413 T G ZNF607 Missense_Mutation p.K540T 0.16 deleterious(0) probably_damaging(0.977) TCGA-IB-7651-01 19 38190380 38190380 A G ZNF607 Missense_Mutation p.F218L 0.19 deleterious(0.04) benign(0.001) TCGA-IB-7651-01 19 38229915 38229915 A G ZNF573 Silent p.H492H 0.18 TCGA-IB-7651-01 19 38229999 38229999 G A ZNF573 Silent p.H464H 0.18 TCGA-IB-7651-01 19 38572967 38572967 C T SIPA1L3 Silent p.G254G 0.26 TCGA-IB-7651-01 19 38600883 38600883 A G SIPA1L3 Missense_Mutation p.H717R 0.04 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 38610136 38610136 C A SIPA1L3 Missense_Mutation p.L828M 0.24 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 38610224 38610224 C T SIPA1L3 Missense_Mutation p.T857I 0.17 tolerated(0.22) benign(0.027) TCGA-IB-7651-01 19 38682946 38682946 C T SIPA1L3 Missense_Mutation p.T1531M 0.15 tolerated(0.28) benign(0.017) TCGA-IB-7651-01 19 38706892 38706892 C A DPF1 Missense_Mutation p.K289N 0.24 deleterious(0.01) probably_damaging(0.936) TCGA-IB-7651-01 19 38709239 38709239 T G DPF1 Silent p.R191R 0.15 TCGA-IB-7651-01 19 38817849 38817849 G T KCNK6 Missense_Mutation p.V250L 0.11 tolerated(1) benign(0.012) TCGA-IB-7651-01 19 38817902 38817902 G A KCNK6 Silent p.E267E 0.17 TCGA-IB-7651-01 19 38858390 38858390 C A CATSPERG Silent p.I968I 0.04 TCGA-IB-7651-01 19 38900606 38900606 C T RASGRP4 3'UTR 0.14 TCGA-IB-7651-01 19 38931486 38931486 G T RYR1 Missense_Mutation p.E49D 0.16 probably_damaging(0.977) TCGA-IB-7651-01 19 38937111 38937111 G T RYR1 Splice_Site p.X211_splice 0.20 TCGA-IB-7651-01 19 38956988 38956988 G A RYR1 Missense_Mutation p.R1043H 0.20 probably_damaging(0.993) TCGA-IB-7651-01 19 38959659 38959659 C T RYR1 Silent p.G1145G 0.19 TCGA-IB-7651-01 19 38976414 38976414 C T RYR1 Missense_Mutation p.R1707C 0.18 probably_damaging(0.996) TCGA-IB-7651-01 19 38993325 38993325 C T RYR1 Missense_Mutation p.A2598V 0.17 benign(0.1) TCGA-IB-7651-01 19 38996982 38996982 G A RYR1 Missense_Mutation p.D2861N 0.16 benign(0.146) TCGA-IB-7651-01 19 39013945 39013945 C A RYR1 Missense_Mutation p.A3479D 0.05 benign(0.005) TCGA-IB-7651-01 19 39028579 39028579 C A RYR1 Missense_Mutation p.L3890I 0.15 benign(0.001) TCGA-IB-7651-01 19 39058490 39058490 C A RYR1 Missense_Mutation p.P4531H 0.18 unknown(0) TCGA-IB-7651-01 19 39062895 39062895 C T RYR1 Silent p.G4661G 0.10 TCGA-IB-7651-01 19 39063833 39063833 T G RYR1 Missense_Mutation p.F4672C 0.21 benign(0.035) TCGA-IB-7651-01 19 39087084 39087084 G A MAP4K1 Silent p.L662L 0.22 TCGA-IB-7651-01 19 39087996 39087996 C T MAP4K1 Missense_Mutation p.D603N 0.17 deleterious(0.03) benign(0.304) TCGA-IB-7651-01 19 39088093 39088093 G T MAP4K1 Intron 0.04 TCGA-IB-7651-01 19 39090764 39090764 C T MAP4K1 Missense_Mutation p.G521S 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 3909544 3909544 C T ATCAY Silent p.N236N 0.19 TCGA-IB-7651-01 19 3910849 3910849 C T ATCAY Silent p.F276F 0.20 TCGA-IB-7651-01 19 39108630 39108630 C T MAP4K1 5'Flank 0.19 TCGA-IB-7651-01 19 39109845 39109845 C T EIF3K 5'UTR 0.18 TCGA-IB-7651-01 19 39116677 39116677 C T EIF3K Missense_Mutation p.R97W 0.17 deleterious(0.05) benign(0.005) TCGA-IB-7651-01 19 3917763 3917763 C T ATCAY Missense_Mutation p.A330V 0.14 tolerated(0.08) benign(0.045) TCGA-IB-7651-01 19 39233119 39233119 C T CAPN12 Silent p.R119R 0.13 TCGA-IB-7651-01 19 39292728 39292728 G A LGALS4 Silent p.N243N 0.17 TCGA-IB-7651-01 19 39294407 39294407 C T LGALS4 Missense_Mutation p.C172Y 0.16 tolerated(1) benign(0) TCGA-IB-7651-01 19 39306165 39306165 G A ECH1 3'UTR 0.12 TCGA-IB-7651-01 19 39360243 39360243 G T RINL Missense_Mutation p.L482I 0.16 deleterious(0.03) probably_damaging(0.936) TCGA-IB-7651-01 19 39360267 39360267 G T RINL Missense_Mutation p.L474M 0.17 deleterious(0.02) probably_damaging(1) TCGA-IB-7651-01 19 39361854 39361854 G A RINL Silent p.I155I 0.09 TCGA-IB-7651-01 19 3942256 3942256 G A NMRK2 Silent p.Q226Q 0.11 TCGA-IB-7651-01 19 39423415 39423415 G A MRPS12 3'UTR 0.18 TCGA-IB-7651-01 19 39437163 39437163 A G CTC-360G5.8 Missense_Mutation p.V74A 0.18 deleterious_low_confidence(0.02) benign(0.047) TCGA-IB-7651-01 19 39516062 39516062 G A FBXO27 Missense_Mutation p.R281C 0.14 tolerated(0.07) benign(0.001) TCGA-IB-7651-01 19 39517624 39517624 G A FBXO27 Silent p.S198S 0.16 TCGA-IB-7651-01 19 39667298 39667298 C T PAK4 Silent p.V476V 0.17 TCGA-IB-7651-01 19 39667313 39667313 G A PAK4 Nonsense_Mutation p.W481* 0.20 TCGA-IB-7651-01 19 39734508 39734508 G A IFNL3 Missense_Mutation p.R150C 0.15 deleterious(0) possibly_damaging(0.667) TCGA-IB-7651-01 19 39759474 39759474 C A IFNL2 Silent p.A56A 0.23 TCGA-IB-7651-01 19 3977529 3977529 C T EEF2 Missense_Mutation p.R716H 0.23 deleterious(0.04) probably_damaging(1) TCGA-IB-7651-01 19 39789231 39789231 C A IFNL1 3'UTR 0.22 TCGA-IB-7651-01 19 39798496 39798496 G A LRFN1 Missense_Mutation p.P698L 0.24 tolerated(0.05) benign(0) TCGA-IB-7651-01 19 39798503 39798503 C T LRFN1 Missense_Mutation p.A696T 0.22 tolerated(0.38) benign(0) TCGA-IB-7651-01 19 39805276 39805276 G A LRFN1 Missense_Mutation p.S234L 0.24 deleterious(0.03) benign(0.002) TCGA-IB-7651-01 19 39805339 39805339 A G LRFN1 Missense_Mutation p.V213A 0.24 tolerated(1) benign(0.23) TCGA-IB-7651-01 19 3981965 3981965 T C EEF2 Missense_Mutation p.I293V 0.18 tolerated(0.94) benign(0.004) TCGA-IB-7651-01 19 39847484 39847484 G A SAMD4B 5'UTR 0.14 TCGA-IB-7651-01 19 39874240 39874240 C T SAMD4B 3'UTR 0.18 TCGA-IB-7651-01 19 39879412 39879412 C T PAF1 Missense_Mutation p.A244T 0.17 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 19 39880299 39880299 G T PAF1 Silent p.T91T 0.20 TCGA-IB-7651-01 19 39884197 39884197 A G MED29 Missense_Mutation p.S115G 0.16 tolerated(0.33) benign(0.111) TCGA-IB-7651-01 19 39907007 39907007 G A PLEKHG2 Missense_Mutation p.E167K 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IB-7651-01 19 39908676 39908676 C A PLEKHG2 Missense_Mutation p.F338L 0.12 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-IB-7651-01 19 39916071 39916071 C T PLEKHG2 3'UTR 0.17 TCGA-IB-7651-01 19 39936466 39936466 C T SUPT5H 5'UTR 0.30 TCGA-IB-7651-01 19 39955444 39955444 C T SUPT5H Nonsense_Mutation p.Q211* 0.17 TCGA-IB-7651-01 19 39964966 39964966 C T SUPT5H Missense_Mutation p.A915V 0.19 tolerated(0.08) benign(0.022) TCGA-IB-7651-01 19 39971218 39971218 G T TIMM50 Missense_Mutation p.D12Y 0.16 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-IB-7651-01 19 39972597 39972597 C A TIMM50 Missense_Mutation p.S164R 0.20 tolerated(0.15) possibly_damaging(0.696) TCGA-IB-7651-01 19 39998898 39998898 C T DLL3 3'UTR 0.18 TCGA-IB-7651-01 19 39998900 39998900 C T DLL3 3'UTR 0.10 TCGA-IB-7651-01 19 4028840 4028840 C T PIAS4 Silent p.Y265Y 0.16 TCGA-IB-7651-01 19 40316646 40316646 C T DYRK1B Silent p.S533S 0.05 TCGA-IB-7651-01 19 40316827 40316827 C A DYRK1B Missense_Mutation p.S504I 0.19 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-IB-7651-01 19 40318000 40318000 C T DYRK1B Silent p.A340A 0.11 TCGA-IB-7651-01 19 40319092 40319092 C T DYRK1B Missense_Mutation p.A218T 0.18 deleterious(0.02) probably_damaging(0.917) TCGA-IB-7651-01 19 40327287 40327287 G T FBL Missense_Mutation p.A235D 0.21 deleterious(0) probably_damaging(0.951) TCGA-IB-7651-01 19 40331285 40331285 G A FBL Silent p.G51G 0.17 TCGA-IB-7651-01 19 4033503 4033503 T C PIAS4 Missense_Mutation p.M356T 0.21 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 19 40354319 40354319 G A FCGBP Missense_Mutation p.H5384Y 0.20 benign(0.055) TCGA-IB-7651-01 19 40357401 40357401 C T FCGBP Silent p.T5304T 0.10 TCGA-IB-7651-01 19 40357450 40357450 G A FCGBP Missense_Mutation p.T5288M 0.24 possibly_damaging(0.9) TCGA-IB-7651-01 19 40357475 40357475 C T FCGBP Missense_Mutation p.E5280K 0.18 benign(0.058) TCGA-IB-7651-01 19 40362919 40362919 C T FCGBP Missense_Mutation p.G5051R 0.22 probably_damaging(1) TCGA-IB-7651-01 19 4037768 4037768 G A PIAS4 Silent p.S476S 0.19 TCGA-IB-7651-01 19 40392729 40392729 C T FCGBP Missense_Mutation p.G2592E 0.11 benign(0.074) TCGA-IB-7651-01 19 40396125 40396125 G T FCGBP Silent p.S2424S 0.10 TCGA-IB-7651-01 19 40398175 40398175 G A FCGBP Silent p.D2264D 0.10 TCGA-IB-7651-01 19 40408716 40408716 G A FCGBP Missense_Mutation p.R1375W 0.10 possibly_damaging(0.903) TCGA-IB-7651-01 19 40411738 40411738 T C FCGBP Missense_Mutation p.N1297S 0.15 probably_damaging(0.999) TCGA-IB-7651-01 19 40421334 40421334 T C FCGBP Missense_Mutation p.T863A 0.20 benign(0.358) TCGA-IB-7651-01 19 40424170 40424170 G A FCGBP Missense_Mutation p.T678I 0.19 probably_damaging(0.925) TCGA-IB-7651-01 19 40433172 40433172 G A FCGBP Missense_Mutation p.A366V 0.06 possibly_damaging(0.628) TCGA-IB-7651-01 19 40433216 40433216 T C FCGBP Silent p.V351V 0.15 TCGA-IB-7651-01 19 40480536 40480536 A G PSMC4 Missense_Mutation p.K192R 0.16 tolerated(0.16) benign(0.003) TCGA-IB-7651-01 19 40485876 40485876 G A PSMC4 Missense_Mutation p.D276N 0.23 deleterious(0.02) probably_damaging(0.916) TCGA-IB-7651-01 19 40486618 40486618 T C PSMC4 Silent p.C379C 0.14 TCGA-IB-7651-01 19 40504294 40504294 C T ZNF546 Missense_Mutation p.P21S 0.10 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-IB-7651-01 19 40513257 40513257 A G ZNF546 Missense_Mutation p.D83G 0.19 tolerated(0.21) possibly_damaging(0.822) TCGA-IB-7651-01 19 40521033 40521033 G A ZNF546 Missense_Mutation p.R619Q 0.21 tolerated(0.17) possibly_damaging(0.553) TCGA-IB-7651-01 19 40542318 40542318 G T ZNF780B Missense_Mutation p.P150T 0.20 tolerated(0.38) possibly_damaging(0.641) TCGA-IB-7651-01 19 40580283 40580283 T G ZNF780A 3'UTR 0.10 TCGA-IB-7651-01 19 40581425 40581425 C T ZNF780A Silent p.K309K 0.19 TCGA-IB-7651-01 19 40719444 40719444 G A MAP3K10 Missense_Mutation p.D620N 0.22 tolerated(0.11) benign(0.032) TCGA-IB-7651-01 19 40724059 40724059 C T TTC9B Missense_Mutation p.R77Q 0.06 deleterious(0.01) benign(0.296) TCGA-IB-7651-01 19 40743876 40743876 C A AKT2 Missense_Mutation p.K277N 0.09 deleterious(0.02) probably_damaging(0.987) TCGA-IB-7651-01 19 40884077 40884077 C A PLD3 Silent p.L490L 0.17 TCGA-IB-7651-01 19 40885655 40885655 C T HIPK4 Missense_Mutation p.D564N 0.14 tolerated_low_confidence(0.15) benign(0.005) TCGA-IB-7651-01 19 40889760 40889760 C T HIPK4 Missense_Mutation p.R251H 0.16 deleterious(0.01) possibly_damaging(0.9) TCGA-IB-7651-01 19 40889978 40889978 C T HIPK4 Silent p.S178S 0.19 TCGA-IB-7651-01 19 40895661 40895661 C T HIPK4 Missense_Mutation p.R50H 0.12 deleterious(0.05) benign(0.025) TCGA-IB-7651-01 19 40899821 40899821 C T PRX 3'UTR 0.05 TCGA-IB-7651-01 19 40902860 40902860 C A PRX Nonsense_Mutation p.E467* 0.20 TCGA-IB-7651-01 19 40904649 40904649 C T PRX Missense_Mutation p.A87T 0.15 deleterious(0) possibly_damaging(0.695) TCGA-IB-7651-01 19 40928717 40928717 C T SERTAD1 3'UTR 0.12 TCGA-IB-7651-01 19 40929186 40929186 C T SERTAD1 Missense_Mutation p.V90M 0.17 tolerated(0.13) benign(0.008) TCGA-IB-7651-01 19 40947463 40947463 G T SERTAD3 Missense_Mutation p.F175L 0.14 tolerated(0.16) probably_damaging(0.931) TCGA-IB-7651-01 19 40978533 40978533 C T SPTBN4 Missense_Mutation p.A2V 0.14 deleterious_low_confidence(0.01) benign(0.004) TCGA-IB-7651-01 19 4099233 4099233 C T MAP2K2 Silent p.S295S 0.25 TCGA-IB-7651-01 19 41008410 41008410 A G SPTBN4 Missense_Mutation p.D400G 0.04 deleterious(0) benign(0.203) TCGA-IB-7651-01 19 41009865 41009865 C T SPTBN4 Silent p.A497A 0.05 TCGA-IB-7651-01 19 41019444 41019444 C T SPTBN4 Silent p.V916V 0.09 TCGA-IB-7651-01 19 41062025 41062025 G A SPTBN4 Missense_Mutation p.R1707H 0.14 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 41063119 41063119 C A SPTBN4 Missense_Mutation p.A1827D 0.21 tolerated(0.11) probably_damaging(0.969) TCGA-IB-7651-01 19 41119858 41119858 G A LTBP4 Missense_Mutation p.S932N 0.19 tolerated(0.25) benign(0.258) TCGA-IB-7651-01 19 41125325 41125325 C A LTBP4 Silent p.L1114L 0.12 TCGA-IB-7651-01 19 41128920 41128920 C T LTBP4 Missense_Mutation p.R1250W 0.15 tolerated(0.12) probably_damaging(0.929) TCGA-IB-7651-01 19 41135381 41135381 C T LTBP4 Missense_Mutation p.R1600C 0.09 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 41173718 41173718 C T NUMBL Silent p.P495P 0.20 TCGA-IB-7651-01 19 41173926 41173926 G A NUMBL Missense_Mutation p.A426V 0.20 tolerated(0.1) benign(0.001) TCGA-IB-7651-01 19 41198107 41198107 G A ADCK4 Missense_Mutation p.R490C 0.24 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 41289706 41289706 G A RAB4B Missense_Mutation p.R79Q 0.18 deleterious(0) probably_damaging(0.917) TCGA-IB-7651-01 19 41306816 41306816 G T EGLN2 Silent p.R113R 0.10 TCGA-IB-7651-01 19 41388043 41388043 G A CYP2A7 Nonsense_Mutation p.Q25* 0.18 TCGA-IB-7651-01 19 41509926 41509926 C T CYP2B6 Silent p.D64D 0.15 TCGA-IB-7651-01 19 41509980 41509980 G T CYP2B6 Missense_Mutation p.E82D 0.16 tolerated(0.62) benign(0.003) TCGA-IB-7651-01 19 41518231 41518231 G A CYP2B6 Silent p.V331V 0.23 TCGA-IB-7651-01 19 4153764 4153764 C T CREB3L3 Missense_Mutation p.A7V 0.12 tolerated_low_confidence(0.22) benign(0.004) TCGA-IB-7651-01 19 41594992 41594992 C A CYP2A13 Silent p.G113G 0.16 TCGA-IB-7651-01 19 41596450 41596450 C T CYP2A13 Missense_Mutation p.T212M 0.14 tolerated(1) probably_damaging(0.928) TCGA-IB-7651-01 19 41601664 41601664 G T CYP2A13 Splice_Site p.X435_splice 0.17 TCGA-IB-7651-01 19 41626311 41626311 C A CYP2F1 Missense_Mutation p.L132I 0.18 deleterious(0) probably_damaging(0.967) TCGA-IB-7651-01 19 41704369 41704369 C T CYP2S1 Missense_Mutation p.R166C 0.16 deleterious(0.04) benign(0.017) TCGA-IB-7651-01 19 41704625 41704625 G A CYP2S1 Missense_Mutation p.M222I 0.04 tolerated(0.11) possibly_damaging(0.843) TCGA-IB-7651-01 19 41726619 41726619 G A AXL Missense_Mutation p.R55Q 0.24 tolerated(0.36) benign(0.008) TCGA-IB-7651-01 19 41726632 41726632 G T AXL Missense_Mutation p.Q59H 0.18 tolerated(0.09) benign(0.004) TCGA-IB-7651-01 19 41748838 41748838 C A AXL Missense_Mutation p.L455I 0.19 tolerated(0.23) benign(0.188) TCGA-IB-7651-01 19 41765518 41765518 G A AXL Silent p.E798E 0.18 TCGA-IB-7651-01 19 41807498 41807498 C T HNRNPUL1 Missense_Mutation p.R526C 0.21 deleterious(0) unknown(0) TCGA-IB-7651-01 19 41854288 41854288 G A TGFB1 Missense_Mutation p.A143V 0.20 tolerated(0.24) benign(0.133) TCGA-IB-7651-01 19 41884213 41884213 C T TMEM91 5'UTR 0.15 TCGA-IB-7651-01 19 41892608 41892608 G A EXOSC5 Missense_Mutation p.A213V 0.08 deleterious(0.02) possibly_damaging(0.906) TCGA-IB-7651-01 19 4199913 4199913 C T ANKRD24 Silent p.A55A 0.19 TCGA-IB-7651-01 19 4202024 4202024 T C ANKRD24 Silent p.G115G 0.10 TCGA-IB-7651-01 19 42083774 42083774 G T CEACAM21 Missense_Mutation p.S96I 0.14 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 19 42132106 42132106 C T CEACAM4 Missense_Mutation p.R98Q 0.18 tolerated(0.06) possibly_damaging(0.86) TCGA-IB-7651-01 19 4216663 4216663 G T ANKRD24 Missense_Mutation p.Q502H 0.17 deleterious(0.01) benign(0.048) TCGA-IB-7651-01 19 42192088 42192088 A G CEACAM7 Missense_Mutation p.S3P 0.17 tolerated(1) benign(0.001) TCGA-IB-7651-01 19 42219576 42219576 G A CEACAM5 Silent p.P237P 0.18 TCGA-IB-7651-01 19 42222194 42222194 T A CEACAM5 Missense_Mutation p.L462H 0.20 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 19 42223929 42223929 C T CEACAM5 Missense_Mutation p.P525S 0.16 tolerated(0.07) benign(0.292) TCGA-IB-7651-01 19 42260853 42260853 A G CEACAM6 Missense_Mutation p.Q137R 0.17 tolerated(0.06) benign(0.018) TCGA-IB-7651-01 19 42266125 42266125 G T CEACAM6 Missense_Mutation p.V318F 0.18 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 19 42301583 42301583 C T CEACAM3 Missense_Mutation p.L43F 0.19 tolerated(1) benign(0) TCGA-IB-7651-01 19 42301744 42301744 C T CEACAM3 Silent p.S96S 0.12 TCGA-IB-7651-01 19 42342983 42342983 G A LYPD4 Silent p.C61C 0.21 TCGA-IB-7651-01 19 42343377 42343377 C A LYPD4 5'UTR 0.19 TCGA-IB-7651-01 19 42352907 42352907 G A DMRTC2 Silent p.S164S 0.31 TCGA-IB-7651-01 19 42396876 42396876 G T ARHGEF1 Missense_Mutation p.E205D 0.22 deleterious(0.02) benign(0.037) TCGA-IB-7651-01 19 42406492 42406492 G A ARHGEF1 Missense_Mutation p.V510M 0.16 tolerated(0.1) possibly_damaging(0.891) TCGA-IB-7651-01 19 42482344 42482344 C T ATP1A3 Missense_Mutation p.V602I 0.17 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 19 42546761 42546761 G A GRIK5 Silent p.Y472Y 0.16 TCGA-IB-7651-01 19 42583614 42583614 C T ZNF574 Missense_Mutation p.R286W 0.20 deleterious(0.03) benign(0.09) TCGA-IB-7651-01 19 42585038 42585038 C T ZNF574 Silent p.H760H 0.17 TCGA-IB-7651-01 19 42585196 42585196 G A ZNF574 Missense_Mutation p.R813H 0.18 deleterious(0.01) probably_damaging(0.954) TCGA-IB-7651-01 19 42729326 42729326 C T ZNF526 Silent p.V257V 0.20 TCGA-IB-7651-01 19 42752816 42752816 C T ERF Missense_Mutation p.R483H 0.17 deleterious(0) possibly_damaging(0.84) TCGA-IB-7651-01 19 42753023 42753023 C A ERF Missense_Mutation p.G414V 0.21 tolerated_low_confidence(0.31) benign(0.199) TCGA-IB-7651-01 19 42753278 42753278 C T ERF Missense_Mutation p.R329H 0.10 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 42753347 42753347 C A ERF Missense_Mutation p.S306I 0.17 deleterious(0) possibly_damaging(0.737) TCGA-IB-7651-01 19 42795086 42795086 G A CIC Silent p.P722P 0.17 TCGA-IB-7651-01 19 42797365 42797365 G A CIC Missense_Mutation p.A1243T 0.13 benign(0.001) TCGA-IB-7651-01 19 42799146 42799146 G A CIC Missense_Mutation p.A1544T 0.22 unknown(0) TCGA-IB-7651-01 19 4283065 4283065 G T SHD Missense_Mutation p.G140W 0.09 deleterious(0) possibly_damaging(0.469) TCGA-IB-7651-01 19 42837896 42837896 G A MEGF8 Silent p.P109P 0.16 TCGA-IB-7651-01 19 42848687 42848687 C A MEGF8 Missense_Mutation p.P628H 0.24 tolerated(0.1) probably_damaging(0.947) TCGA-IB-7651-01 19 42857101 42857101 T G MEGF8 Missense_Mutation p.H1057Q 0.14 tolerated(0.06) benign(0.43) TCGA-IB-7651-01 19 42858175 42858175 C T MEGF8 Missense_Mutation p.T1270M 0.23 tolerated(0.1) benign(0.357) TCGA-IB-7651-01 19 42863068 42863068 G T MEGF8 Nonsense_Mutation p.G1702* 0.21 TCGA-IB-7651-01 19 42866638 42866638 C T MEGF8 Nonsense_Mutation p.R1916* 0.19 TCGA-IB-7651-01 19 42867301 42867301 C T MEGF8 Missense_Mutation p.P1987S 0.25 deleterious(0.03) benign(0.12) TCGA-IB-7651-01 19 42874461 42874461 T C MEGF8 Silent p.L2252L 0.17 TCGA-IB-7651-01 19 42910490 42910490 G T LIPE Missense_Mutation p.L730I 0.17 deleterious(0.02) possibly_damaging(0.71) TCGA-IB-7651-01 19 42911420 42911420 G A LIPE Silent p.I681I 0.10 TCGA-IB-7651-01 19 43233933 43233933 G A PSG3 Missense_Mutation p.L329F 0.15 deleterious(0.04) probably_damaging(0.982) TCGA-IB-7651-01 19 43234057 43234057 C A PSG3 Missense_Mutation p.K287N 0.16 deleterious(0.02) possibly_damaging(0.9) TCGA-IB-7651-01 19 43259290 43259290 G A PSG8 Missense_Mutation p.L280F 0.17 tolerated(0.11) probably_damaging(0.998) TCGA-IB-7651-01 19 43348747 43348747 C A PSG10P RNA 0.18 TCGA-IB-7651-01 19 43359721 43359721 C T PSG10P RNA 0.04 TCGA-IB-7651-01 19 43372352 43372352 G A PSG1 Missense_Mutation p.R382C 0.16 tolerated(0.19) benign(0.371) TCGA-IB-7651-01 19 43372370 43372370 C A PSG1 Nonsense_Mutation p.G376* 0.15 TCGA-IB-7651-01 19 43514144 43514144 C T PSG11 3'UTR 0.07 TCGA-IB-7651-01 19 43519460 43519460 C T PSG11 Missense_Mutation p.D258N 0.21 tolerated(1) benign(0.007) TCGA-IB-7651-01 19 436418 436418 T C SHC2 Missense_Mutation p.Y263C 0.22 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 43679390 43679390 T G PSG5 Missense_Mutation p.K314T 0.16 tolerated(1) benign(0.052) TCGA-IB-7651-01 19 43698728 43698728 C A PSG4 Missense_Mutation p.S336I 0.18 tolerated(0.23) possibly_damaging(0.864) TCGA-IB-7651-01 19 43763286 43763286 C T PSG9 Silent p.P237P 0.15 TCGA-IB-7651-01 19 43766205 43766205 C T PSG9 Silent p.E172E 0.19 TCGA-IB-7651-01 19 43858420 43858420 C T CD177 Silent p.R85R 0.19 TCGA-IB-7651-01 19 43858441 43858441 C A CD177 Silent p.G92G 0.18 TCGA-IB-7651-01 19 44001249 44001249 C T PHLDB3 Intron 0.17 TCGA-IB-7651-01 19 4400336 4400336 G A SH3GL1 Silent p.F10F 0.10 TCGA-IB-7651-01 19 44015646 44015646 C T ETHE1 Missense_Mutation p.A150T 0.13 deleterious(0.01) probably_damaging(0.976) TCGA-IB-7651-01 19 44056975 44056975 G A XRCC1 Missense_Mutation p.S266L 0.19 tolerated(0.17) benign(0.006) TCGA-IB-7651-01 19 440898 440898 C T SHC2 Missense_Mutation p.R168H 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 4409479 4409479 C T CHAF1A Missense_Mutation p.A228V 0.16 tolerated_low_confidence(0.13) unknown(0) TCGA-IB-7651-01 19 44097296 44097296 C T IRGQ Missense_Mutation p.A252T 0.18 deleterious(0.02) possibly_damaging(0.849) TCGA-IB-7651-01 19 44099517 44099517 C A IRGQ Intron 0.20 TCGA-IB-7651-01 19 44101344 44101344 C T ZNF576 Silent p.I28I 0.24 TCGA-IB-7651-01 19 44278573 44278573 G A KCNN4 Silent p.L152L 0.16 TCGA-IB-7651-01 19 4432089 4432089 C T CHAF1A Silent p.C696C 0.21 TCGA-IB-7651-01 19 4433183 4433183 C T CHAF1A Missense_Mutation p.R774W 0.21 deleterious(0.01) benign(0.341) TCGA-IB-7651-01 19 44418337 44418337 C T ZNF45 Silent p.Q417Q 0.16 TCGA-IB-7651-01 19 4445464 4445464 C T UBXN6 3'UTR 0.20 TCGA-IB-7651-01 19 44470613 44470613 G A ZNF221 Missense_Mutation p.R320H 0.18 tolerated(0.49) benign(0.031) TCGA-IB-7651-01 19 44471258 44471258 A C ZNF221 Missense_Mutation p.K535T 0.19 deleterious(0.04) benign(0.085) TCGA-IB-7651-01 19 44501451 44501451 A C ZNF155 Missense_Mutation p.K492T 0.19 deleterious(0) possibly_damaging(0.535) TCGA-IB-7651-01 19 44514566 44514566 G T ZNF230 Missense_Mutation p.Q125H 0.17 tolerated(0.1) benign(0.008) TCGA-IB-7651-01 19 44515396 44515396 G A ZNF230 Missense_Mutation p.S402N 0.17 tolerated(0.15) benign(0.094) TCGA-IB-7651-01 19 4457633 4457633 T C UBXN6 Missense_Mutation p.Q21R 0.10 tolerated(0.4) benign(0.118) TCGA-IB-7651-01 19 44605038 44605038 C T ZNF224 Nonsense_Mutation p.R34* 0.20 TCGA-IB-7651-01 19 44612103 44612103 A C ZNF224 Missense_Mutation p.K597T 0.21 deleterious(0.02) benign(0.084) TCGA-IB-7651-01 19 44622685 44622685 T G ZNF225 Missense_Mutation p.F65V 0.16 deleterious(0.04) benign(0.01) TCGA-IB-7651-01 19 44636026 44636026 G T ZNF225 Missense_Mutation p.R420I 0.20 deleterious(0.01) benign(0.188) TCGA-IB-7651-01 19 44636174 44636174 G A ZNF225 Silent p.S469S 0.20 TCGA-IB-7651-01 19 44636716 44636716 A C ZNF225 Missense_Mutation p.K650T 0.14 tolerated(0.08) benign(0.09) TCGA-IB-7651-01 19 44660497 44660497 G T ZNF234 Missense_Mutation p.D110Y 0.21 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 19 44661008 44661008 G T ZNF234 Missense_Mutation p.R280I 0.20 tolerated(0.14) probably_damaging(0.941) TCGA-IB-7651-01 19 44680638 44680638 C T ZNF226 Missense_Mutation p.S408F 0.19 tolerated(0.11) probably_damaging(0.996) TCGA-IB-7651-01 19 44740976 44740976 A C ZNF227 Missense_Mutation p.K798T 0.17 deleterious(0.03) benign(0.085) TCGA-IB-7651-01 19 44778193 44778193 C T ZNF233 Silent p.G460G 0.19 TCGA-IB-7651-01 19 44791924 44791924 C A ZNF235 Missense_Mutation p.S555I 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 19 44833535 44833535 T G ZNF112 Missense_Mutation p.K265Q 0.19 tolerated(0.07) benign(0.031) TCGA-IB-7651-01 19 44932978 44932978 C A ZNF229 Nonsense_Mutation p.E660* 0.05 TCGA-IB-7651-01 19 44934204 44934204 T G ZNF229 Missense_Mutation p.K251T 0.21 tolerated(0.13) benign(0.001) TCGA-IB-7651-01 19 44982351 44982351 G A ZNF180 Missense_Mutation p.A116V 0.18 tolerated(0.36) benign(0) TCGA-IB-7651-01 19 45024580 45024580 C T CEACAM20 RNA 0.28 TCGA-IB-7651-01 19 4510584 4510584 C A PLIN4 Missense_Mutation p.G1116C 0.19 deleterious(0) possibly_damaging(0.864) TCGA-IB-7651-01 19 45150592 45150592 G A PVR Silent p.T59T 0.17 TCGA-IB-7651-01 19 45209005 45209005 G T CEACAM16 Missense_Mutation p.Q269H 0.20 deleterious(0.02) possibly_damaging(0.571) TCGA-IB-7651-01 19 45213775 45213775 G A CEACAM16 Silent p.G425G 0.18 TCGA-IB-7651-01 19 4523771 4523771 C A PLIN5 Missense_Mutation p.E387D 0.20 tolerated(0.28) benign(0.002) TCGA-IB-7651-01 19 4525690 4525690 G A PLIN5 Silent p.H225H 0.18 TCGA-IB-7651-01 19 45260657 45260657 C T BCL3 Silent p.A266A 0.10 TCGA-IB-7651-01 19 45262730 45262730 C A BCL3 Missense_Mutation p.P408H 0.04 tolerated(0.1) unknown(0) TCGA-IB-7651-01 19 4529361 4529361 A T PLIN5 Intron 0.21 TCGA-IB-7651-01 19 45322676 45322676 G A BCAM Missense_Mutation p.S516N 0.20 tolerated(0.31) possibly_damaging(0.841) TCGA-IB-7651-01 19 4538016 4538016 G A LRG1 Missense_Mutation p.T327M 0.16 deleterious(0.01) probably_damaging(0.972) TCGA-IB-7651-01 19 45391366 45391366 G T PVRL2 Splice_Site p.X450_splice 0.19 TCGA-IB-7651-01 19 45391699 45391699 C A PVRL2 3'UTR 0.22 TCGA-IB-7651-01 19 45412285 45412285 C T APOE Silent p.R244R 0.17 TCGA-IB-7651-01 19 45489787 45489787 C T CLPTM1 Silent p.D249D 0.16 TCGA-IB-7651-01 19 45490528 45490528 C T CLPTM1 Silent p.N295N 0.17 TCGA-IB-7651-01 19 45556400 45556400 G A CLASRP Missense_Mutation p.R115H 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 45563854 45563854 C T CLASRP Missense_Mutation p.R278W 0.08 deleterious(0) probably_damaging(0.951) TCGA-IB-7651-01 19 45575632 45575632 G A ZNF296 Missense_Mutation p.P219S 0.24 tolerated(0.47) benign(0.002) TCGA-IB-7651-01 19 4558383 4558383 C T SEMA6B Silent p.E29E 0.19 TCGA-IB-7651-01 19 45668402 45668402 G A TRAPPC6A Silent p.G59G 0.20 TCGA-IB-7651-01 19 45762366 45762366 C T MARK4 Silent p.G57G 0.13 TCGA-IB-7651-01 19 45774951 45774951 C T MARK4 Silent p.D257D 0.20 TCGA-IB-7651-01 19 45781209 45781209 A C MARK4 Missense_Mutation p.K272T 0.18 deleterious(0) possibly_damaging(0.839) TCGA-IB-7651-01 19 45805679 45805679 G A MARK4 Missense_Mutation p.R657Q 0.18 deleterious(0) benign(0.147) TCGA-IB-7651-01 19 45810739 45810739 C T CKM Missense_Mutation p.R316H 0.09 deleterious(0.05) probably_damaging(0.957) TCGA-IB-7651-01 19 45821181 45821181 C A CKM Missense_Mutation p.V84F 0.15 deleterious(0) possibly_damaging(0.735) TCGA-IB-7651-01 19 45821219 45821219 G T CKM Missense_Mutation p.T71N 0.14 deleterious(0.03) probably_damaging(0.979) TCGA-IB-7651-01 19 45867704 45867704 G T ERCC2 Silent p.V232V 0.14 TCGA-IB-7651-01 19 45885941 45885941 G A PPP1R13L Silent p.Y764Y 0.19 TCGA-IB-7651-01 19 45888926 45888926 C T PPP1R13L Silent p.Q714Q 0.15 TCGA-IB-7651-01 19 45889369 45889369 C T PPP1R13L Missense_Mutation p.V629M 0.12 deleterious(0) possibly_damaging(0.449) TCGA-IB-7651-01 19 45918173 45918173 C T ERCC1 Silent p.E216E 0.13 TCGA-IB-7651-01 19 45924573 45924573 C T ERCC1 Missense_Mutation p.E62K 0.18 deleterious(0.01) possibly_damaging(0.453) TCGA-IB-7651-01 19 45988824 45988824 G A RTN2 3'UTR 0.24 TCGA-IB-7651-01 19 45991740 45991740 G A RTN2 Missense_Mutation p.R496W 0.18 deleterious(0.01) probably_damaging(0.948) TCGA-IB-7651-01 19 45992145 45992145 C T RTN2 Silent p.R447R 0.19 TCGA-IB-7651-01 19 45996450 45996450 C A RTN2 Missense_Mutation p.S334I 0.17 tolerated_low_confidence(0.13) benign(0.017) TCGA-IB-7651-01 19 45998110 45998110 C T RTN2 Missense_Mutation p.R78H 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IB-7651-01 19 46087992 46087992 G T OPA3 Missense_Mutation p.L11M 0.19 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 19 46095003 46095003 G A GPR4 Missense_Mutation p.A41V 0.17 tolerated(0.51) probably_damaging(0.999) TCGA-IB-7651-01 19 46124788 46124788 G A EML2 Missense_Mutation p.R518W 0.21 deleterious(0) probably_damaging(0.978) TCGA-IB-7651-01 19 46130084 46130084 G T EML2 Missense_Mutation p.A408D 0.19 deleterious(0.01) benign(0.345) TCGA-IB-7651-01 19 46201906 46201906 G A QPCTL Silent p.Q245Q 0.16 TCGA-IB-7651-01 19 46216211 46216211 C T FBXO46 Silent p.Q181Q 0.18 TCGA-IB-7651-01 19 46271482 46271482 G A SIX5 Silent p.C207C 0.15 TCGA-IB-7651-01 19 46280710 46280710 C T DMPK Missense_Mutation p.G351S 0.15 deleterious(0) probably_damaging(0.922) TCGA-IB-7651-01 19 46281440 46281440 C A DMPK Missense_Mutation p.G217V 0.09 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 46281893 46281893 C A DMPK Missense_Mutation p.V157F 0.14 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 19 46319807 46319807 G A SYMPK Missense_Mutation p.T1096I 0.16 tolerated(0.16) benign(0.013) TCGA-IB-7651-01 19 46332306 46332306 G A SYMPK Missense_Mutation p.S636L 0.09 tolerated(0.12) benign(0.001) TCGA-IB-7651-01 19 46341750 46341750 G T SYMPK Missense_Mutation p.P404H 0.18 tolerated(0.07) possibly_damaging(0.8) TCGA-IB-7651-01 19 46345746 46345746 G A SYMPK Silent p.A283A 0.16 TCGA-IB-7651-01 19 46351106 46351106 G T SYMPK Missense_Mutation p.L194M 0.17 tolerated(0.13) possibly_damaging(0.474) TCGA-IB-7651-01 19 46376245 46376245 G A FOXA3 Missense_Mutation p.G328R 0.17 deleterious(0) possibly_damaging(0.8) TCGA-IB-7651-01 19 46389025 46389025 G T IRF2BP1 Missense_Mutation p.S3Y 0.28 tolerated(0.06) possibly_damaging(0.608) TCGA-IB-7651-01 19 46404623 46404623 G A MYPOP Missense_Mutation p.P137S 0.26 tolerated(0.22) benign(0.001) TCGA-IB-7651-01 19 46418022 46418022 C T NANOS2 5'UTR 0.14 TCGA-IB-7651-01 19 46443145 46443145 G A NOVA2 Silent p.A485A 0.19 TCGA-IB-7651-01 19 46627247 46627247 G T IGFL3 Nonsense_Mutation p.C82* 0.20 TCGA-IB-7651-01 19 46811543 46811543 C T HIF3A Silent p.D143D 0.17 TCGA-IB-7651-01 19 46812577 46812577 G A HIF3A Missense_Mutation p.R244H 0.09 deleterious(0) possibly_damaging(0.477) TCGA-IB-7651-01 19 4690947 4690947 C A DPP9 Missense_Mutation p.K513N 0.18 tolerated(0.46) benign(0.11) TCGA-IB-7651-01 19 46915898 46915898 C T CCDC8 Missense_Mutation p.R57H 0.17 probably_damaging(0.999) TCGA-IB-7651-01 19 46971816 46971816 G T PNMAL1 3'UTR 0.15 TCGA-IB-7651-01 19 46974141 46974141 C A PNMAL1 Missense_Mutation p.G51V 0.13 deleterious(0.01) probably_damaging(0.979) TCGA-IB-7651-01 19 46998367 46998367 G A PNMAL2 Missense_Mutation p.A119V 0.21 tolerated(0.2) possibly_damaging(0.491) TCGA-IB-7651-01 19 47028947 47028947 C T PPP5D1 Silent p.K110K 0.14 TCGA-IB-7651-01 19 47178333 47178333 T G PRKD2 Missense_Mutation p.K794T 0.11 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 47194999 47194999 G T PRKD2 Silent p.V565V 0.15 TCGA-IB-7651-01 19 47197201 47197201 C T PRKD2 Missense_Mutation p.A503T 0.21 tolerated(0.06) possibly_damaging(0.709) TCGA-IB-7651-01 19 47207843 47207843 C T PRKD2 Missense_Mutation p.R192H 0.15 deleterious(0) possibly_damaging(0.649) TCGA-IB-7651-01 19 47223960 47223960 G A STRN4 Missense_Mutation p.R728C 0.17 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 19 47228829 47228829 C T STRN4 Missense_Mutation p.R449H 0.20 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 19 47228837 47228837 G A STRN4 Silent p.D446D 0.10 TCGA-IB-7651-01 19 47228870 47228870 C T STRN4 Nonsense_Mutation p.W435* 0.12 TCGA-IB-7651-01 19 47232005 47232005 C T STRN4 Missense_Mutation p.M303I 0.17 tolerated(0.22) benign(0.001) TCGA-IB-7651-01 19 47259280 47259280 C T FKRP Silent p.C191C 0.23 TCGA-IB-7651-01 19 47423229 47423229 C T ARHGAP35 Nonsense_Mutation p.R433* 0.18 TCGA-IB-7651-01 19 47424817 47424817 G A ARHGAP35 Missense_Mutation p.S962N 0.21 tolerated(0.73) benign(0.135) TCGA-IB-7651-01 19 47424913 47424913 G A ARHGAP35 Missense_Mutation p.S994N 0.09 tolerated(0.09) benign(0.032) TCGA-IB-7651-01 19 47503963 47503963 C T ARHGAP35 3'UTR 0.14 TCGA-IB-7651-01 19 47535606 47535606 G A NPAS1 Silent p.L143L 0.21 TCGA-IB-7651-01 19 47542776 47542776 G A NPAS1 Missense_Mutation p.V306I 0.22 deleterious(0.04) benign(0.17) TCGA-IB-7651-01 19 47570756 47570756 C T ZC3H4 Silent p.T923T 0.04 TCGA-IB-7651-01 19 47584827 47584827 G A ZC3H4 Silent p.D461D 0.16 TCGA-IB-7651-01 19 47588377 47588377 C T ZC3H4 Missense_Mutation p.S348N 0.18 unknown(0) TCGA-IB-7651-01 19 47763668 47763668 G A CCDC9 Missense_Mutation p.A67T 0.20 tolerated(0.68) possibly_damaging(0.579) TCGA-IB-7651-01 19 47775089 47775089 G T CCDC9 3'UTR 0.29 TCGA-IB-7651-01 19 47813138 47813138 C A C5AR1 5'UTR 0.13 TCGA-IB-7651-01 19 47844125 47844125 C T C5AR2 Silent p.C23C 0.06 TCGA-IB-7651-01 19 47856540 47856540 C T DHX34 Nonsense_Mutation p.Q85* 0.04 TCGA-IB-7651-01 19 47865893 47865893 C T DHX34 Silent p.F512F 0.22 TCGA-IB-7651-01 19 47870358 47870358 G A DHX34 Missense_Mutation p.A572T 0.19 tolerated(0.23) benign(0.008) TCGA-IB-7651-01 19 47879730 47879730 G A DHX34 Missense_Mutation p.V838M 0.20 tolerated(0.05) probably_damaging(1) TCGA-IB-7651-01 19 4793050 4793050 A G FEM1A Missense_Mutation p.Y395C 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-IB-7651-01 19 4793649 4793649 G A FEM1A Missense_Mutation p.A595T 0.14 tolerated(0.52) benign(0.005) TCGA-IB-7651-01 19 47969093 47969093 G A SLC8A2 Missense_Mutation p.R190C 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 47979831 47979831 C T KPTN Silent p.Q380Q 0.20 TCGA-IB-7651-01 19 47996703 47996703 G T NAPA Silent p.I130I 0.18 TCGA-IB-7651-01 19 4817507 4817507 C A TICAM1 Nonsense_Mutation p.E295* 0.14 TCGA-IB-7651-01 19 48183836 48183836 A G GLTSCR1 Missense_Mutation p.N470S 0.17 unknown(0) TCGA-IB-7651-01 19 48197882 48197882 C T GLTSCR1 Missense_Mutation p.P932S 0.19 possibly_damaging(0.84) TCGA-IB-7651-01 19 48244498 48244498 C T EHD2 Missense_Mutation p.L481F 0.05 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 48254262 48254262 C T GLTSCR2 Missense_Mutation p.R166C 0.13 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 19 48255775 48255775 G A GLTSCR2 Missense_Mutation p.A226T 0.18 tolerated(0.34) benign(0.027) TCGA-IB-7651-01 19 48255822 48255822 G A GLTSCR2 Silent p.A241A 0.18 TCGA-IB-7651-01 19 48258122 48258122 C T GLTSCR2 Missense_Mutation p.R343W 0.12 deleterious(0.01) benign(0.334) TCGA-IB-7651-01 19 48342621 48342621 G T CRX Missense_Mutation p.Q99H 0.21 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 19 48342916 48342916 G A CRX Missense_Mutation p.A198T 0.21 tolerated(0.19) possibly_damaging(0.53) TCGA-IB-7651-01 19 48343134 48343134 G A CRX Silent p.K270K 0.16 TCGA-IB-7651-01 19 48382317 48382317 T C SULT2A1 Silent p.L181L 0.18 TCGA-IB-7651-01 19 4839066 4839066 C A PLIN3 3'UTR 0.17 TCGA-IB-7651-01 19 4844705 4844705 G A PLIN3 Missense_Mutation p.P312L 0.15 tolerated(0.19) benign(0.043) TCGA-IB-7651-01 19 4847718 4847718 C T PLIN3 Silent p.S273S 0.18 TCGA-IB-7651-01 19 4847894 4847894 C T PLIN3 Missense_Mutation p.A215T 0.16 deleterious(0) probably_damaging(0.943) TCGA-IB-7651-01 19 48519159 48519159 G A ELSPBP1 Missense_Mutation p.R73H 0.25 tolerated(0.12) probably_damaging(0.998) TCGA-IB-7651-01 19 4852162 4852162 G A PLIN3 Missense_Mutation p.S167F 0.11 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 19 48523002 48523002 C A ELSPBP1 Missense_Mutation p.P128T 0.05 deleterious(0.02) possibly_damaging(0.573) TCGA-IB-7651-01 19 4859664 4859664 C T PLIN3 Missense_Mutation p.A96T 0.14 deleterious(0.02) possibly_damaging(0.811) TCGA-IB-7651-01 19 48598787 48598787 C T PLA2G4C Missense_Mutation p.G225R 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 48785680 48785680 C T ZNF114 Missense_Mutation p.T21I 0.17 tolerated(0.27) possibly_damaging(0.803) TCGA-IB-7651-01 19 48800327 48800327 C T CCDC114 Missense_Mutation p.G640E 0.16 deleterious(0.02) probably_damaging(0.988) TCGA-IB-7651-01 19 48800516 48800516 G A CCDC114 Missense_Mutation p.T577M 0.19 deleterious(0) probably_damaging(0.975) TCGA-IB-7651-01 19 48806314 48806314 C T CCDC114 Missense_Mutation p.E306K 0.16 deleterious(0) probably_damaging(0.911) TCGA-IB-7651-01 19 48806982 48806982 C T CCDC114 Missense_Mutation p.E268K 0.20 deleterious(0.01) possibly_damaging(0.823) TCGA-IB-7651-01 19 48876806 48876806 G A SYNGR4 Silent p.L42L 0.19 TCGA-IB-7651-01 19 48908591 48908591 C T GRIN2D Missense_Mutation p.R356C 0.22 tolerated(0.06) possibly_damaging(0.641) TCGA-IB-7651-01 19 48922979 48922979 G A GRIN2D Missense_Mutation p.V667I 0.09 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 19 48945066 48945066 T C GRIN2D Missense_Mutation p.Y765H 0.20 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 19 48945465 48945465 C T GRIN2D Silent p.I833I 0.19 TCGA-IB-7651-01 19 48953707 48953707 C T GRWD1 Silent p.A202A 0.17 TCGA-IB-7651-01 19 48953963 48953963 C A GRWD1 Silent p.L241L 0.19 TCGA-IB-7651-01 19 48956001 48956001 G A GRWD1 Missense_Mutation p.A354T 0.04 tolerated(0.06) possibly_damaging(0.783) TCGA-IB-7651-01 19 48965133 48965133 G A KCNJ14 Missense_Mutation p.R51H 0.22 deleterious(0.02) probably_damaging(0.94) TCGA-IB-7651-01 19 48965137 48965137 C T KCNJ14 Silent p.F52F 0.20 TCGA-IB-7651-01 19 48965230 48965230 C T KCNJ14 Silent p.D83D 0.19 TCGA-IB-7651-01 19 48965405 48965405 C A KCNJ14 Missense_Mutation p.L142M 0.16 tolerated(0.06) probably_damaging(0.985) TCGA-IB-7651-01 19 4896836 4896836 A G ARRDC5 Silent p.P116P 0.15 TCGA-IB-7651-01 19 48977504 48977504 C T CYTH2 Missense_Mutation p.R205W 0.16 tolerated(0.06) benign(0.022) TCGA-IB-7651-01 19 49001742 49001742 G T LMTK3 Missense_Mutation p.L891M 0.16 unknown(0) TCGA-IB-7651-01 19 49133082 49133082 C T SPHK2 3'UTR 0.15 TCGA-IB-7651-01 19 49134162 49134162 C T DBP Missense_Mutation p.V304M 0.17 tolerated(0.22) benign(0.19) TCGA-IB-7651-01 19 49134254 49134254 C T DBP Missense_Mutation p.R273H 0.22 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 49167894 49167894 G A NTN5 Silent p.C254C 0.13 TCGA-IB-7651-01 19 49183750 49183750 G A RN7SL345P 5'Flank 0.17 TCGA-IB-7651-01 19 49206490 49206490 G A FUT2 Missense_Mutation p.A93T 0.15 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 19 49232824 49232824 C T RASIP1 Silent p.T401T 0.13 TCGA-IB-7651-01 19 49303312 49303312 C T BCAT2 Missense_Mutation p.E153K 0.23 tolerated(0.59) benign(0.01) TCGA-IB-7651-01 19 49357476 49357476 C A PLEKHA4 Missense_Mutation p.D365Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 49362745 49362745 G A PLEKHA4 Missense_Mutation p.R225W 0.18 deleterious(0.01) benign(0.022) TCGA-IB-7651-01 19 49378030 49378030 C T PPP1R15A Missense_Mutation p.P514S 0.20 deleterious(0) probably_damaging(0.968) TCGA-IB-7651-01 19 49379046 49379046 G A PPP1R15A Missense_Mutation p.R614K 0.08 deleterious(0.01) unknown(0) TCGA-IB-7651-01 19 49473039 49473039 G A GYS1 Missense_Mutation p.A628V 0.18 tolerated(0.6) benign(0.284) TCGA-IB-7651-01 19 4950688 4950688 G A UHRF1 RNA 0.19 TCGA-IB-7651-01 19 49507607 49507607 G T RUVBL2 Missense_Mutation p.G66V 0.17 deleterious(0) probably_damaging(0.978) TCGA-IB-7651-01 19 49510577 49510577 C T RUVBL2 Silent p.I138I 0.09 TCGA-IB-7651-01 19 49513315 49513315 G T RUVBL2 Missense_Mutation p.G219C 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-IB-7651-01 19 49519269 49519269 C T LHB 3'UTR 0.19 TCGA-IB-7651-01 19 49527342 49527342 G T CGB 5'UTR 0.18 TCGA-IB-7651-01 19 49539472 49539472 G A CGB1 Missense_Mutation p.T33I 0.13 tolerated(0.08) benign(0.141) TCGA-IB-7651-01 19 49558776 49558776 A G CGB7 5'UTR 0.22 TCGA-IB-7651-01 19 49573470 49573470 G A KCNA7 Silent p.G407G 0.23 TCGA-IB-7651-01 19 49575299 49575299 C T KCNA7 Missense_Mutation p.A182T 0.23 tolerated(0.67) benign(0.002) TCGA-IB-7651-01 19 4960820 4960820 A G UHRF1 RNA 0.08 TCGA-IB-7651-01 19 49611533 49611533 C T SNRNP70 Missense_Mutation p.R383W 0.09 deleterious_low_confidence(0) unknown(0) TCGA-IB-7651-01 19 49632175 49632175 G A PPFIA3 Missense_Mutation p.R138H 0.17 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 19 49656971 49656971 G A HRC Silent p.G508G 0.19 TCGA-IB-7651-01 19 49657295 49657295 C T HRC Silent p.K400K 0.17 TCGA-IB-7651-01 19 49658323 49658323 G A HRC Missense_Mutation p.R58C 0.17 deleterious(0) benign(0.001) TCGA-IB-7651-01 19 49675021 49675021 G T TRPM4 Missense_Mutation p.A349S 0.20 tolerated(0.6) benign(0.269) TCGA-IB-7651-01 19 49703979 49703979 C T TRPM4 Missense_Mutation p.R964C 0.14 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 49713653 49713653 G A TRPM4 Missense_Mutation p.E1107K 0.19 tolerated(0.19) benign(0.005) TCGA-IB-7651-01 19 49812269 49812269 G T SLC6A16 Missense_Mutation p.P365T 0.18 deleterious(0.03) possibly_damaging(0.596) TCGA-IB-7651-01 19 49850619 49850619 T C TEAD2 Missense_Mutation p.Y250C 0.18 deleterious(0.02) benign(0.048) TCGA-IB-7651-01 19 49878129 49878129 C T DKKL1 Silent p.S191S 0.15 TCGA-IB-7651-01 19 49938140 49938140 C A SLC17A7 Splice_Site p.X145_splice 0.15 TCGA-IB-7651-01 19 49952887 49952887 G A PIH1D1 Missense_Mutation p.S61L 0.18 tolerated(0.08) benign(0.311) TCGA-IB-7651-01 19 49954801 49954801 G A PIH1D1 Silent p.L11L 0.18 TCGA-IB-7651-01 19 49965961 49965961 A G ALDH16A1 Silent p.A349A 0.16 TCGA-IB-7651-01 19 49969029 49969029 C T ALDH16A1 Missense_Mutation p.R535C 0.21 deleterious(0) possibly_damaging(0.841) TCGA-IB-7651-01 19 49971803 49971803 C A ALDH16A1 Missense_Mutation p.L702M 0.19 tolerated(0.11) possibly_damaging(0.898) TCGA-IB-7651-01 19 50001263 50001263 C T RPS11 Missense_Mutation p.R105C 0.24 tolerated(0.12) benign(0.075) TCGA-IB-7651-01 19 50060162 50060162 G A NOSIP Silent p.P169P 0.17 TCGA-IB-7651-01 19 50060441 50060441 C A NOSIP Missense_Mutation p.Q108H 0.25 deleterious(0.04) benign(0.012) TCGA-IB-7651-01 19 50098064 50098064 G A PRR12 Missense_Mutation p.G158S 0.25 probably_damaging(0.935) TCGA-IB-7651-01 19 50098142 50098142 T C PRR12 Missense_Mutation p.S184P 0.25 possibly_damaging(0.504) TCGA-IB-7651-01 19 50099477 50099477 G T PRR12 Missense_Mutation p.G629C 0.17 probably_damaging(0.984) TCGA-IB-7651-01 19 50161056 50161056 G A SCAF1 Silent p.E1219E 0.13 TCGA-IB-7651-01 19 50166680 50166680 C T IRF3 Missense_Mutation p.R86H 0.19 deleterious(0) probably_damaging(0.978) TCGA-IB-7651-01 19 50191573 50191573 C A PRMT1 3'UTR 0.24 TCGA-IB-7651-01 19 50216321 50216321 G A CPT1C Silent p.T742T 0.20 TCGA-IB-7651-01 19 50243181 50243181 A G TSKS Missense_Mutation p.M544T 0.14 tolerated(0.67) benign(0.012) TCGA-IB-7651-01 19 50249836 50249836 G A TSKS Missense_Mutation p.P295S 0.18 tolerated(0.84) benign(0.01) TCGA-IB-7651-01 19 50310302 50310302 G A FUZ 3'UTR 0.14 TCGA-IB-7651-01 19 50321657 50321657 T A MED25 Missense_Mutation p.F20Y 0.16 deleterious(0) probably_damaging(0.95) TCGA-IB-7651-01 19 50358292 50358292 C T PTOV1 Silent p.C172C 0.16 TCGA-IB-7651-01 19 50387800 50387800 G A TBC1D17 Missense_Mutation p.G443D 0.04 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 50393095 50393095 C T IL4I1 Silent p.S534S 0.18 TCGA-IB-7651-01 19 50411443 50411443 G A NUP62 3'UTR 0.14 TCGA-IB-7651-01 19 50412726 50412726 G T NUP62 Silent p.G113G 0.17 TCGA-IB-7651-01 19 50473791 50473791 C T SIGLEC16 RNA 0.13 TCGA-IB-7651-01 19 5047658 5047658 C T KDM4B Missense_Mutation p.H202Y 0.16 probably_damaging(1) TCGA-IB-7651-01 19 50548036 50548036 C T ZNF473 Silent p.F112F 0.21 TCGA-IB-7651-01 19 50548627 50548627 G A ZNF473 Silent p.E309E 0.18 TCGA-IB-7651-01 19 50549780 50549780 C T ZNF473 Nonsense_Mutation p.R694* 0.16 TCGA-IB-7651-01 19 50549918 50549918 G A ZNF473 Missense_Mutation p.G740S 0.18 tolerated(1) probably_damaging(0.961) TCGA-IB-7651-01 19 50726596 50726596 C A MYH14 Missense_Mutation p.P228Q 0.26 tolerated(0.91) benign(0.032) TCGA-IB-7651-01 19 5077407 5077407 G A KDM4B Missense_Mutation p.D236N 0.16 benign(0.047) TCGA-IB-7651-01 19 50792804 50792804 C T MYH14 Missense_Mutation p.R1622C 0.14 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 19 50796920 50796920 C T MYH14 Silent p.D1815D 0.23 TCGA-IB-7651-01 19 50804952 50804952 G A MYH14 Missense_Mutation p.R1835H 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 50862018 50862018 C T NAPSA Missense_Mutation p.R352H 0.23 tolerated(0.06) benign(0.027) TCGA-IB-7651-01 19 50881936 50881936 C T NR1H2 Silent p.G210G 0.14 TCGA-IB-7651-01 19 50905960 50905960 G A POLD1 Missense_Mutation p.R311H 0.11 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 19 50944251 50944251 C T MYBPC2 Silent p.I229I 0.21 TCGA-IB-7651-01 19 50958825 50958825 A G MYBPC2 Silent p.T754T 0.18 TCGA-IB-7651-01 19 51009374 51009374 G A JOSD2 3'UTR 0.21 TCGA-IB-7651-01 19 51010878 51010878 G A JOSD2 Silent p.A75A 0.16 TCGA-IB-7651-01 19 51021414 51021414 T C LRRC4B Missense_Mutation p.D519G 0.19 tolerated(0.3) benign(0.001) TCGA-IB-7651-01 19 51021716 51021716 G A LRRC4B Silent p.D418D 0.16 TCGA-IB-7651-01 19 51021887 51021887 G T LRRC4B Nonsense_Mutation p.C361* 0.18 TCGA-IB-7651-01 19 51022052 51022052 C T LRRC4B Silent p.V306V 0.21 TCGA-IB-7651-01 19 51128446 51128446 G A SYT3 Silent p.P560P 0.15 TCGA-IB-7651-01 19 51133064 51133064 G A SYT3 Missense_Mutation p.R347C 0.20 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 19 51165631 51165631 C T SHANK1 Missense_Mutation p.G2026E 0.21 unknown(0) TCGA-IB-7651-01 19 51169770 51169770 A G SHANK1 Missense_Mutation p.V1816A 0.17 unknown(0) TCGA-IB-7651-01 19 51220126 51220126 G A SHANK1 Silent p.S17S 0.30 TCGA-IB-7651-01 19 51226907 51226907 A T CLEC11A Missense_Mutation p.E42V 0.23 deleterious_low_confidence(0) benign(0.036) TCGA-IB-7651-01 19 51228461 51228461 C T CLEC11A Missense_Mutation p.P237S 0.15 deleterious(0.01) probably_damaging(0.986) TCGA-IB-7651-01 19 51305615 51305615 C T C19orf48 Intron 0.13 TCGA-IB-7651-01 19 51330304 51330304 C T KLK15 Missense_Mutation p.R104H 0.05 tolerated(0.07) benign(0.027) TCGA-IB-7651-01 19 51330990 51330990 C T KLK15 Missense_Mutation p.R42H 0.06 tolerated(0.17) benign(0.056) TCGA-IB-7651-01 19 51361378 51361378 C A KLK3 Silent p.L100L 0.18 TCGA-IB-7651-01 19 51363558 51363558 T G KLK3 3'UTR 0.16 TCGA-IB-7651-01 19 51446886 51446886 C T KLK5 3'UTR 0.09 TCGA-IB-7651-01 19 51483600 51483600 G A KLK7 Missense_Mutation p.A122V 0.19 tolerated(0.58) benign(0.134) TCGA-IB-7651-01 19 51499263 51499263 G T KLK8 3'UTR 0.16 TCGA-IB-7651-01 19 51506244 51506244 G T KLK9 3'UTR 0.17 TCGA-IB-7651-01 19 51563271 51563271 T C KLK13 Missense_Mutation p.I107V 0.14 tolerated(0.16) benign(0.003) TCGA-IB-7651-01 19 51582124 51582124 G A KLK14 Missense_Mutation p.T200M 0.03 deleterious(0.01) probably_damaging(0.919) TCGA-IB-7651-01 19 51647836 51647836 A G SIGLEC7 Missense_Mutation p.T203A 0.07 deleterious(0) benign(0.317) TCGA-IB-7651-01 19 51728523 51728523 G A CD33 Silent p.V29V 0.19 TCGA-IB-7651-01 19 51729117 51729117 A C CD33 Missense_Mutation p.K159N 0.19 tolerated(0.48) benign(0.065) TCGA-IB-7651-01 19 51832027 51832027 G T IGLON5 3'UTR 0.22 TCGA-IB-7651-01 19 51875714 51875714 C T NKG7 Missense_Mutation p.D26N 0.23 tolerated(0.3) benign(0.013) TCGA-IB-7651-01 19 51883833 51883833 C T LIM2 Missense_Mutation p.R171H 0.19 deleterious(0.01) probably_damaging(0.977) TCGA-IB-7651-01 19 51914212 51914212 T G SIGLEC10 3'UTR 0.13 TCGA-IB-7651-01 19 51918657 51918657 C T SIGLEC10 Missense_Mutation p.V370I 0.13 deleterious(0.01) possibly_damaging(0.8) TCGA-IB-7651-01 19 51955629 51955629 A T SIGLEC8 3'UTR 0.19 TCGA-IB-7651-01 19 51957546 51957546 G A SIGLEC8 Missense_Mutation p.S391L 0.16 tolerated(0.07) possibly_damaging(0.825) TCGA-IB-7651-01 19 51960443 51960443 G A SIGLEC8 Missense_Mutation p.A259V 0.17 tolerated(0.07) benign(0.065) TCGA-IB-7651-01 19 51960871 51960871 C T SIGLEC8 Missense_Mutation p.G193R 0.22 tolerated(0.06) probably_damaging(0.996) TCGA-IB-7651-01 19 51983672 51983672 C T CEACAM18 Silent p.V107V 0.15 TCGA-IB-7651-01 19 52004877 52004877 G A SIGLEC12 Silent p.G37G 0.16 TCGA-IB-7651-01 19 52033991 52033991 A C SIGLEC6 Missense_Mutation p.V217G 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 5208314 5208314 A G PTPRS Missense_Mutation p.F1859S 0.15 deleterious(0) possibly_damaging(0.583) TCGA-IB-7651-01 19 52090174 52090174 A G ZNF175 Missense_Mutation p.K197R 0.17 tolerated(0.09) benign(0.004) TCGA-IB-7651-01 19 5212104 5212104 C T PTPRS Missense_Mutation p.E1643K 0.20 deleterious(0) possibly_damaging(0.84) TCGA-IB-7651-01 19 52131089 52131089 T C SIGLEC5 Missense_Mutation p.Y332C 0.21 tolerated(0.18) benign(0.005) TCGA-IB-7651-01 19 52149521 52149521 A G SIGLEC14 Missense_Mutation p.L137S 0.03 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 52216735 52216735 A G HAS1 Missense_Mutation p.V561A 0.08 tolerated(0.31) benign(0.184) TCGA-IB-7651-01 19 52217270 52217270 A G HAS1 Missense_Mutation p.Y383H 0.21 deleterious(0) probably_damaging(0.928) TCGA-IB-7651-01 19 5222822 5222822 G A PTPRS Missense_Mutation p.A994V 0.18 tolerated(0.31) benign(0.004) TCGA-IB-7651-01 19 52249037 52249037 C A FPR1 3'UTR 0.17 TCGA-IB-7651-01 19 52249187 52249187 C A FPR1 3'UTR 0.23 TCGA-IB-7651-01 19 52250008 52250008 G T FPR1 Missense_Mutation p.F80L 0.18 tolerated(0.18) benign(0.107) TCGA-IB-7651-01 19 52327369 52327369 G A FPR3 Missense_Mutation p.R123H 0.10 deleterious(0.03) possibly_damaging(0.449) TCGA-IB-7651-01 19 52375983 52375983 T A ZNF577 Silent p.S420S 0.15 TCGA-IB-7651-01 19 52376486 52376486 G A ZNF577 Missense_Mutation p.R253W 0.22 deleterious(0.02) benign(0.036) TCGA-IB-7651-01 19 52394210 52394210 C A ZNF649 Missense_Mutation p.Q393H 0.19 deleterious(0.02) probably_damaging(1) TCGA-IB-7651-01 19 52394796 52394796 C A ZNF649 Missense_Mutation p.R198I 0.18 tolerated(0.11) benign(0.444) TCGA-IB-7651-01 19 5244271 5244271 G A PTPRS Missense_Mutation p.A404V 0.11 tolerated(0.06) probably_damaging(1) TCGA-IB-7651-01 19 5244425 5244425 C T PTPRS Missense_Mutation p.D353N 0.19 deleterious(0.04) probably_damaging(0.995) TCGA-IB-7651-01 19 52448197 52448197 G A ZNF613 Missense_Mutation p.R354H 0.13 tolerated(0.53) benign(0.052) TCGA-IB-7651-01 19 52448557 52448557 A G ZNF613 Missense_Mutation p.H474R 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 19 52448993 52448993 A G ZNF613 3'UTR 0.19 TCGA-IB-7651-01 19 52468200 52468200 T C ZNF350 Silent p.G502G 0.20 TCGA-IB-7651-01 19 52496865 52496865 A C ZNF615 Missense_Mutation p.D499E 0.23 tolerated(1) benign(0.23) TCGA-IB-7651-01 19 52496964 52496964 G A ZNF615 Silent p.P466P 0.19 TCGA-IB-7651-01 19 52497170 52497170 G T ZNF615 Missense_Mutation p.L398I 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 19 52497300 52497300 A C ZNF615 Silent p.P354P 0.19 TCGA-IB-7651-01 19 52519953 52519953 G A ZNF614 Missense_Mutation p.R300C 0.16 tolerated(0.2) probably_damaging(0.959) TCGA-IB-7651-01 19 52520505 52520505 G T ZNF614 Missense_Mutation p.L116I 0.19 tolerated(0.39) benign(0.196) TCGA-IB-7651-01 19 52536953 52536953 T C ZNF432 3'UTR 0.18 TCGA-IB-7651-01 19 52550105 52550105 A G ZNF432 Splice_Site p.X5_splice 0.17 TCGA-IB-7651-01 19 52568529 52568529 C T ZNF841 Missense_Mutation p.R869Q 0.20 tolerated(0.1) benign(0.446) TCGA-IB-7651-01 19 52618157 52618157 A C ZNF616 Missense_Mutation p.F754V 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-IB-7651-01 19 52619913 52619913 C A ZNF616 Missense_Mutation p.K168N 0.08 tolerated(0.05) probably_damaging(0.994) TCGA-IB-7651-01 19 52658722 52658722 C T ZNF836 Silent p.T738T 0.09 TCGA-IB-7651-01 19 52658887 52658887 T C ZNF836 Silent p.K683K 0.19 TCGA-IB-7651-01 19 52729015 52729015 G T PPP2R1A Missense_Mutation p.Q569H 0.19 deleterious(0.05) benign(0.024) TCGA-IB-7651-01 19 52825079 52825079 A C ZNF480 Missense_Mutation p.Q192H 0.12 deleterious(0.05) possibly_damaging(0.694) TCGA-IB-7651-01 19 52825080 52825080 G T ZNF480 Nonsense_Mutation p.E193* 0.12 TCGA-IB-7651-01 19 52825103 52825103 A G ZNF480 Silent p.E200E 0.12 TCGA-IB-7651-01 19 52825188 52825188 A C ZNF480 Missense_Mutation p.K229Q 0.18 deleterious(0) benign(0.011) TCGA-IB-7651-01 19 52826133 52826133 C T ZNF480 3'UTR 0.20 TCGA-IB-7651-01 19 52887625 52887625 A G ZNF880 Silent p.G264G 0.22 TCGA-IB-7651-01 19 52918959 52918959 C T ZNF528 Missense_Mutation p.A285V 0.15 tolerated(0.25) benign(0.003) TCGA-IB-7651-01 19 52919388 52919388 G A ZNF528 Missense_Mutation p.R428Q 0.16 tolerated(1) benign(0.023) TCGA-IB-7651-01 19 52941324 52941324 G A ZNF534 Missense_Mutation p.R217H 0.22 tolerated(1) benign(0) TCGA-IB-7651-01 19 52942497 52942497 G A ZNF534 Missense_Mutation p.R608Q 0.18 tolerated(0.58) benign(0) TCGA-IB-7651-01 19 53005079 53005079 G T ZNF578 Splice_Site 0.19 TCGA-IB-7651-01 19 53014089 53014089 T G ZNF578 Missense_Mutation p.I152S 0.18 deleterious(0) possibly_damaging(0.711) TCGA-IB-7651-01 19 53056883 53056883 A C ZNF808 Missense_Mutation p.K238N 0.04 deleterious(0.01) possibly_damaging(0.675) TCGA-IB-7651-01 19 53057635 53057635 G A ZNF808 Missense_Mutation p.R489H 0.07 deleterious(0.03) benign(0) TCGA-IB-7651-01 19 53058088 53058088 G A ZNF808 Missense_Mutation p.R640Q 0.21 tolerated(0.54) possibly_damaging(0.553) TCGA-IB-7651-01 19 53085712 53085712 A G ZNF701 Missense_Mutation p.K200E 0.04 tolerated(0.06) probably_damaging(0.991) TCGA-IB-7651-01 19 53086312 53086312 G A ZNF701 Missense_Mutation p.V400I 0.13 tolerated(0.05) probably_damaging(0.987) TCGA-IB-7651-01 19 53086349 53086349 G T ZNF701 Missense_Mutation p.R412I 0.19 tolerated(0.11) benign(0.031) TCGA-IB-7651-01 19 53087222 53087222 T G ZNF701 3'UTR 0.26 TCGA-IB-7651-01 19 53117594 53117594 A C ZNF83 Missense_Mutation p.F75C 0.20 deleterious(0.03) possibly_damaging(0.72) TCGA-IB-7651-01 19 53158830 53158830 C T CTD-3099C6.9 5'Flank 0.07 TCGA-IB-7651-01 19 53207738 53207738 G T ZNF611 3'UTR 0.14 TCGA-IB-7651-01 19 53208551 53208551 C A ZNF611 Missense_Mutation p.R586I 0.18 tolerated(0.05) probably_damaging(0.999) TCGA-IB-7651-01 19 53270299 53270299 C T ZNF600 Missense_Mutation p.R237H 0.20 tolerated(0.27) benign(0.002) TCGA-IB-7651-01 19 53302703 53302703 C T ZNF28 3'UTR 0.16 TCGA-IB-7651-01 19 53304225 53304225 C T ZNF28 Silent p.A291A 0.19 TCGA-IB-7651-01 19 53304313 53304313 C T ZNF28 Missense_Mutation p.R262H 0.18 tolerated(0.22) benign(0.007) TCGA-IB-7651-01 19 53343623 53343623 C T ZNF468 3'UTR 0.18 TCGA-IB-7651-01 19 53385152 53385152 C T ZNF320 Missense_Mutation p.R76K 0.20 tolerated(0.07) benign(0.012) TCGA-IB-7651-01 19 53453322 53453322 T G ZNF816 Missense_Mutation p.K569T 0.11 deleterious(0.05) benign(0.369) TCGA-IB-7651-01 19 53453615 53453615 A G ZNF816 Silent p.H471H 0.19 TCGA-IB-7651-01 19 53472933 53472933 T C ZNF702P RNA 0.19 TCGA-IB-7651-01 19 53474011 53474011 C A CTD-2620I22.1 RNA 0.15 TCGA-IB-7651-01 19 53572121 53572121 G A ZNF160 Missense_Mutation p.R556W 0.18 deleterious(0.02) possibly_damaging(0.684) TCGA-IB-7651-01 19 535886 535886 G A CDC34 Missense_Mutation p.R76Q 0.19 tolerated(0.06) benign(0.097) TCGA-IB-7651-01 19 53612015 53612015 G A ZNF415 Missense_Mutation p.A428V 0.19 tolerated(0.45) possibly_damaging(0.555) TCGA-IB-7651-01 19 53612071 53612071 C T ZNF415 Silent p.E409E 0.20 TCGA-IB-7651-01 19 53645099 53645099 G A ZNF347 Nonsense_Mutation p.R329* 0.20 TCGA-IB-7651-01 19 53645126 53645126 A G ZNF347 Missense_Mutation p.C320R 0.10 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 19 53652554 53652554 C T ZNF347 Missense_Mutation p.A28T 0.19 deleterious(0.05) probably_damaging(0.997) TCGA-IB-7651-01 19 53667726 53667726 G A ZNF665 Nonsense_Mutation p.R673* 0.12 TCGA-IB-7651-01 19 53668078 53668078 C T ZNF665 Silent p.S555S 0.19 TCGA-IB-7651-01 19 53668976 53668976 T C ZNF665 Missense_Mutation p.H256R 0.04 deleterious(0) probably_damaging(0.978) TCGA-IB-7651-01 19 53669537 53669537 G A ZNF665 Missense_Mutation p.A69V 0.08 tolerated(1) benign(0.003) TCGA-IB-7651-01 19 53678811 53678811 A G ZNF665 Missense_Mutation p.F10S 0.10 tolerated(0.08) probably_damaging(0.964) TCGA-IB-7651-01 19 53740127 53740127 G T ZNF677 3'UTR 0.29 TCGA-IB-7651-01 19 53741328 53741328 C T ZNF677 Missense_Mutation p.E218K 0.19 tolerated(0.05) benign(0.004) TCGA-IB-7651-01 19 53747046 53747046 G A ZNF677 Silent p.N40N 0.19 TCGA-IB-7651-01 19 53754815 53754815 C A ZNF677 5'UTR 0.17 TCGA-IB-7651-01 19 53762196 53762196 A G VN1R2 Missense_Mutation p.T190A 0.18 deleterious(0.01) possibly_damaging(0.786) TCGA-IB-7651-01 19 53762652 53762652 G A VN1R2 Missense_Mutation p.D342N 0.19 tolerated(0.55) benign(0.308) TCGA-IB-7651-01 19 53793138 53793138 C A BIRC8 Nonsense_Mutation p.E164* 0.18 TCGA-IB-7651-01 19 53854087 53854087 C T ZNF845 Silent p.C53C 0.17 TCGA-IB-7651-01 19 53854630 53854630 G T ZNF845 Missense_Mutation p.Q234H 0.19 tolerated(0.08) possibly_damaging(0.833) TCGA-IB-7651-01 19 53855359 53855359 T C ZNF845 Silent p.S477S 0.17 TCGA-IB-7651-01 19 53855474 53855474 A C ZNF845 Missense_Mutation p.I516L 0.16 tolerated(0.22) benign(0.023) TCGA-IB-7651-01 19 53855957 53855957 T C ZNF845 Missense_Mutation p.Y677H 0.18 tolerated(0.58) benign(0.329) TCGA-IB-7651-01 19 53884416 53884416 A C ZNF525 Missense_Mutation p.N195T 0.05 tolerated(0.17) probably_damaging(0.991) TCGA-IB-7651-01 19 53885923 53885923 G A ZNF525 3'UTR 0.13 TCGA-IB-7651-01 19 53912333 53912333 C A ZNF765 Missense_Mutation p.L509I 0.20 deleterious(0.01) possibly_damaging(0.886) TCGA-IB-7651-01 19 53912506 53912506 T C ZNF765 3'UTR 0.14 TCGA-IB-7651-01 19 53945280 53945280 G A TPM3P9 RNA 0.18 TCGA-IB-7651-01 19 53959326 53959326 A G ZNF761 RNA 0.20 TCGA-IB-7651-01 19 53994876 53994876 G A ZNF813 Missense_Mutation p.E464K 0.16 deleterious(0.02) probably_damaging(0.933) TCGA-IB-7651-01 19 53995777 53995777 T G ZNF813 3'UTR 0.22 TCGA-IB-7651-01 19 53995880 53995880 C A ZNF813 3'UTR 0.16 TCGA-IB-7651-01 19 54074947 54074947 C T ZNF331 Silent p.D33D 0.18 TCGA-IB-7651-01 19 54080543 54080543 C T ZNF331 Silent p.Y243Y 0.22 TCGA-IB-7651-01 19 54081316 54081316 A G ZNF331 3'UTR 0.23 TCGA-IB-7651-01 19 54137909 54137909 G A DPRX Silent p.S51S 0.13 TCGA-IB-7651-01 19 54308655 54308655 C T NLRP12 Missense_Mutation p.A765T 0.17 tolerated(0.09) possibly_damaging(0.45) TCGA-IB-7651-01 19 54313231 54313231 C T NLRP12 Missense_Mutation p.R561H 0.15 tolerated(0.09) benign(0.09) TCGA-IB-7651-01 19 54313950 54313950 C T NLRP12 Silent p.E321E 0.23 TCGA-IB-7651-01 19 54327489 54327489 C T NLRP12 5'UTR 0.23 TCGA-IB-7651-01 19 54377221 54377221 C T MYADM Silent p.I146I 0.16 TCGA-IB-7651-01 19 54377236 54377236 C T MYADM Silent p.Y151Y 0.16 TCGA-IB-7651-01 19 54377422 54377422 C T MYADM Silent p.C213C 0.20 TCGA-IB-7651-01 19 54403724 54403724 C T PRKCG Silent p.G475G 0.14 TCGA-IB-7651-01 19 54544247 54544247 C A VSTM1 Nonsense_Mutation p.G227* 0.17 TCGA-IB-7651-01 19 54544318 54544318 C T VSTM1 Missense_Mutation p.G203E 0.24 tolerated(0.24) benign(0.064) TCGA-IB-7651-01 19 5455699 5455699 C T ZNRF4 Missense_Mutation p.A66V 0.21 tolerated_low_confidence(0.3) benign(0.028) TCGA-IB-7651-01 19 54600355 54600355 G A OSCAR Missense_Mutation p.P60L 0.15 deleterious(0) probably_damaging(0.935) TCGA-IB-7651-01 19 54647751 54647751 C T CNOT3 Missense_Mutation p.R90W 0.15 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 54649380 54649380 G A CNOT3 Missense_Mutation p.R177H 0.21 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 19 54652176 54652176 C T CNOT3 Silent p.S396S 0.21 TCGA-IB-7651-01 19 54656031 54656031 C T CNOT3 Silent p.D558D 0.17 TCGA-IB-7651-01 19 54659048 54659048 G T CNOT3 Missense_Mutation p.G722V 0.12 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 19 54659086 54659086 C T CNOT3 Missense_Mutation p.R735W 0.13 deleterious(0) possibly_damaging(0.898) TCGA-IB-7651-01 19 54669172 54669172 A G TMC4 Missense_Mutation p.I315T 0.16 tolerated(0.24) benign(0.002) TCGA-IB-7651-01 19 54742952 54742952 C A LILRA6 Missense_Mutation p.K441N 0.08 deleterious(0.01) benign(0.048) TCGA-IB-7651-01 19 54745706 54745706 G A LILRA6 Missense_Mutation p.A135V 0.08 deleterious(0) benign(0.177) TCGA-IB-7651-01 19 54759962 54759962 C A LILRB5 Missense_Mutation p.R200M 0.17 deleterious(0.02) benign(0.276) TCGA-IB-7651-01 19 54778643 54778643 T C LILRB2 Missense_Mutation p.Q564R 0.20 deleterious(0) benign(0.025) TCGA-IB-7651-01 19 54822915 54822915 G T LILRA5 Missense_Mutation p.Q161K 0.19 tolerated(0.06) benign(0.119) TCGA-IB-7651-01 19 54849305 54849305 G A LILRA4 Missense_Mutation p.T186I 0.14 tolerated(0.06) benign(0.03) TCGA-IB-7651-01 19 54932493 54932493 T C TTYH1 Silent p.S116S 0.17 TCGA-IB-7651-01 19 54965677 54965677 G T LENG8 Missense_Mutation p.Q165H 0.18 tolerated(0.15) possibly_damaging(0.735) TCGA-IB-7651-01 19 54966209 54966209 C T LENG8 Silent p.N253N 0.18 TCGA-IB-7651-01 19 54966594 54966594 G T LENG8 Missense_Mutation p.Q291H 0.22 deleterious(0) possibly_damaging(0.857) TCGA-IB-7651-01 19 54969152 54969152 G A LENG8 Missense_Mutation p.E625K 0.19 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 19 55019358 55019358 G A LAIR2 Missense_Mutation p.G108E 0.18 tolerated(1) benign(0.026) TCGA-IB-7651-01 19 55084858 55084858 G T LILRA2 5'UTR 0.24 TCGA-IB-7651-01 19 55086036 55086036 G A LILRA2 Silent p.E113E 0.20 TCGA-IB-7651-01 19 55086372 55086372 C A LILRA2 Missense_Mutation p.S176Y 0.10 tolerated(1) probably_damaging(1) TCGA-IB-7651-01 19 55086784 55086784 C A LILRA2 Missense_Mutation p.S239R 0.18 tolerated(0.09) benign(0.013) TCGA-IB-7651-01 19 55237647 55237647 C T KIR3DL3 Missense_Mutation p.P67S 0.19 tolerated(0.5) benign(0.348) TCGA-IB-7651-01 19 55263116 55263116 T C KIR2DL3 Missense_Mutation p.L244P 0.04 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 55282321 55282321 G A KIR2DL1 Missense_Mutation p.A19T 0.36 tolerated(0.2) probably_damaging(0.991) TCGA-IB-7651-01 19 55344225 55344225 G A KIR3DL1 3'Flank 0.17 TCGA-IB-7651-01 19 55349302 55349302 C T KIR2DS4 Silent p.P114P 0.18 TCGA-IB-7651-01 19 55351056 55351056 C A KIR2DS4 Missense_Mutation p.L182M 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.649) TCGA-IB-7651-01 19 55401222 55401222 G A FCAR Missense_Mutation p.C286Y 0.19 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-IB-7651-01 19 55423572 55423572 C T NCR1 Missense_Mutation p.T240M 0.18 tolerated(0.16) benign(0.003) TCGA-IB-7651-01 19 55451160 55451160 C A NLRP7 Missense_Mutation p.A343S 0.19 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 19 55451411 55451411 T C NLRP7 Missense_Mutation p.K259R 0.18 tolerated(1) benign(0.009) TCGA-IB-7651-01 19 55494232 55494232 C T NLRP2 Missense_Mutation p.A389V 0.19 deleterious(0.01) possibly_damaging(0.668) TCGA-IB-7651-01 19 55501543 55501543 C T NLRP2 Silent p.C840C 0.20 TCGA-IB-7651-01 19 55525665 55525665 A G GP6 Missense_Mutation p.Y550H 0.16 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-IB-7651-01 19 55543732 55543732 G A GP6 Missense_Mutation p.P34S 0.19 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-IB-7651-01 19 55589480 55589480 C T EPS8L1 Silent p.S14S 0.17 TCGA-IB-7651-01 19 55591075 55591075 C A EPS8L1 Nonsense_Mutation p.C45* 0.15 TCGA-IB-7651-01 19 55607246 55607246 T C PPP1R12C Missense_Mutation p.K406E 0.19 tolerated(0.36) benign(0.003) TCGA-IB-7651-01 19 55663256 55663256 C A TNNI3 Missense_Mutation p.K193N 0.21 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 19 55663261 55663261 G A TNNI3 Missense_Mutation p.R192C 0.20 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 19 55665401 55665401 C A TNNI3 Missense_Mutation p.E182D 0.19 tolerated(0.07) benign(0) TCGA-IB-7651-01 19 55668952 55668952 C T TNNI3 Silent p.A2A 0.19 TCGA-IB-7651-01 19 55672787 55672787 C T DNAAF3 Splice_Site p.X290_splice 0.17 TCGA-IB-7651-01 19 55677365 55677365 G T DNAAF3 Missense_Mutation p.P98H 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-IB-7651-01 19 55687085 55687085 C T SYT5 Missense_Mutation p.A178T 0.15 tolerated(1) benign(0.004) TCGA-IB-7651-01 19 55687147 55687147 C T SYT5 Missense_Mutation p.R157Q 0.10 deleterious(0) possibly_damaging(0.731) TCGA-IB-7651-01 19 55689710 55689710 C T SYT5 Missense_Mutation p.V36M 0.17 tolerated(0.09) benign(0.207) TCGA-IB-7651-01 19 55696921 55696921 C T PTPRH Missense_Mutation p.R1004Q 0.12 probably_damaging(0.992) TCGA-IB-7651-01 19 55708507 55708507 C T PTPRH Silent p.T656T 0.17 TCGA-IB-7651-01 19 55708767 55708767 C T PTPRH Missense_Mutation p.D570N 0.05 benign(0.05) TCGA-IB-7651-01 19 55713637 55713637 C T PTPRH Missense_Mutation p.A314T 0.15 benign(0.007) TCGA-IB-7651-01 19 55777302 55777302 C T HSPBP1 Missense_Mutation p.R282Q 0.09 tolerated(0.36) benign(0.004) TCGA-IB-7651-01 19 55805718 55805718 C T BRSK1 Missense_Mutation p.R211W 0.21 deleterious(0) possibly_damaging(0.898) TCGA-IB-7651-01 19 55824302 55824302 G T TMEM150B Nonsense_Mutation p.C209* 0.20 TCGA-IB-7651-01 19 55853169 55853169 C T SUV420H2 5'UTR 0.20 TCGA-IB-7651-01 19 55853326 55853326 G T SUV420H2 Missense_Mutation p.A8S 0.19 deleterious(0.03) probably_damaging(0.971) TCGA-IB-7651-01 19 55857588 55857588 C A SUV420H2 Missense_Mutation p.P193H 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 19 55899621 55899621 G A RPL28 Intron 0.18 TCGA-IB-7651-01 19 55913000 55913000 G A UBE2S Missense_Mutation p.A158V 0.18 tolerated(0.11) benign(0.007) TCGA-IB-7651-01 19 55964733 55964733 G A ISOC2 Missense_Mutation p.P203L 0.16 tolerated(0.13) benign(0.139) TCGA-IB-7651-01 19 55992598 55992598 C T ZNF628 Missense_Mutation p.A13V 0.25 tolerated(0.32) benign(0.035) TCGA-IB-7651-01 19 55993021 55993021 C A ZNF628 Missense_Mutation p.P154H 0.14 deleterious(0.05) probably_damaging(0.991) TCGA-IB-7651-01 19 55994231 55994231 C T ZNF628 Silent p.R557R 0.19 TCGA-IB-7651-01 19 55994536 55994536 G A ZNF628 Missense_Mutation p.G659D 0.24 tolerated(0.35) benign(0.059) TCGA-IB-7651-01 19 55995070 55995070 C T ZNF628 Missense_Mutation p.A837V 0.22 deleterious(0.04) unknown(0) TCGA-IB-7651-01 19 55995119 55995119 G A ZNF628 Silent p.T853T 0.22 TCGA-IB-7651-01 19 55995125 55995125 G A ZNF628 Silent p.Q855Q 0.23 TCGA-IB-7651-01 19 56042645 56042645 G A SBK2 Silent p.F107F 0.07 TCGA-IB-7651-01 19 56104155 56104155 G A FIZ1 Silent p.G384G 0.21 TCGA-IB-7651-01 19 56113511 56113511 G A ZNF524 Silent p.S11S 0.21 TCGA-IB-7651-01 19 56114114 56114114 G A ZNF524 Silent p.T212T 0.20 TCGA-IB-7651-01 19 56156601 56156601 G A ZNF581 3'UTR 0.23 TCGA-IB-7651-01 19 56160870 56160870 G A CCDC106 Missense_Mutation p.R78H 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 19 56163952 56163952 A C CCDC106 Missense_Mutation p.E228A 0.19 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 19 56204384 56204384 G A EPN1 Silent p.P501P 0.18 TCGA-IB-7651-01 19 56206203 56206203 C T EPN1 Missense_Mutation p.A545V 0.27 tolerated(0.09) benign(0.12) TCGA-IB-7651-01 19 56300721 56300721 G T NLRP11 Missense_Mutation p.A853D 0.17 deleterious(0.01) probably_damaging(0.946) TCGA-IB-7651-01 19 56320642 56320642 C T NLRP11 Missense_Mutation p.R445H 0.20 tolerated(0.71) benign(0.007) TCGA-IB-7651-01 19 56369008 56369008 G A NLRP4 Intron 0.15 TCGA-IB-7651-01 19 56407480 56407480 G A NLRP13 Missense_Mutation p.A988V 0.22 deleterious(0.02) benign(0.388) TCGA-IB-7651-01 19 5641869 5641869 C A SAFB Missense_Mutation p.A153D 0.18 tolerated(0.26) benign(0.313) TCGA-IB-7651-01 19 56423953 56423953 C T NLRP13 Silent p.Q410Q 0.20 TCGA-IB-7651-01 19 56466053 56466053 G T NLRP8 Missense_Mutation p.G210V 0.15 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 56466774 56466774 A C NLRP8 Missense_Mutation p.Q450H 0.17 tolerated(0.08) benign(0.037) TCGA-IB-7651-01 19 56477586 56477586 C T NLRP8 Missense_Mutation p.R741C 0.17 tolerated(0.18) benign(0.012) TCGA-IB-7651-01 19 56539009 56539009 G A NLRP5 Silent p.V470V 0.15 TCGA-IB-7651-01 19 56600023 56600023 C T ZNF787 Missense_Mutation p.S173N 0.15 deleterious(0) possibly_damaging(0.709) TCGA-IB-7651-01 19 56600160 56600160 G A ZNF787 Silent p.C127C 0.19 TCGA-IB-7651-01 19 56614364 56614364 C T ZNF787 Intron 0.24 TCGA-IB-7651-01 19 56614517 56614517 C T ZNF787 Missense_Mutation p.E24K 0.19 tolerated(0.09) probably_damaging(0.956) TCGA-IB-7651-01 19 56704380 56704380 G T ZSCAN5B Silent p.P14P 0.18 TCGA-IB-7651-01 19 56895111 56895111 C T ZNF582 3'UTR 0.26 TCGA-IB-7651-01 19 56935069 56935069 G A ZNF583 Missense_Mutation p.G348R 0.17 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 19 56935091 56935091 A C ZNF583 Missense_Mutation p.N355T 0.20 tolerated(0.53) benign(0.243) TCGA-IB-7651-01 19 56935280 56935280 G A ZNF583 Missense_Mutation p.S418N 0.14 deleterious(0.05) possibly_damaging(0.554) TCGA-IB-7651-01 19 56935478 56935478 G T ZNF583 Missense_Mutation p.R484I 0.18 deleterious(0.02) probably_damaging(0.996) TCGA-IB-7651-01 19 5693652 5693652 C A LONP1 Missense_Mutation p.A817S 0.23 tolerated(0.07) probably_damaging(0.955) TCGA-IB-7651-01 19 5694911 5694911 C T LONP1 Missense_Mutation p.R672H 0.15 deleterious(0) benign(0.336) TCGA-IB-7651-01 19 56973726 56973726 C T ZNF667 Missense_Mutation p.R5Q 0.14 deleterious(0.04) benign(0.003) TCGA-IB-7651-01 19 57036219 57036219 C A ZNF471 Silent p.L261L 0.07 TCGA-IB-7651-01 19 57036570 57036570 T C ZNF471 Silent p.I378I 0.18 TCGA-IB-7651-01 19 57060343 57060343 G T ZFP28 Missense_Mutation p.W180C 0.14 tolerated(0.19) benign(0) TCGA-IB-7651-01 19 57061959 57061959 G T ZFP28 Nonsense_Mutation p.G295* 0.17 TCGA-IB-7651-01 19 57088168 57088168 G A ZNF470 Missense_Mutation p.R124K 0.20 tolerated(0.39) benign(0.024) TCGA-IB-7651-01 19 57088924 57088924 C T ZNF470 Missense_Mutation p.A376V 0.07 deleterious(0) benign(0.442) TCGA-IB-7651-01 19 57133136 57133136 G A ZNF71 Missense_Mutation p.D161N 0.21 tolerated(1) benign(0.001) TCGA-IB-7651-01 19 57133840 57133840 G A ZNF71 Silent p.S395S 0.17 TCGA-IB-7651-01 19 57133900 57133900 C T ZNF71 Silent p.C415C 0.18 TCGA-IB-7651-01 19 57134102 57134102 C T ZNF71 Missense_Mutation p.R483C 0.14 deleterious(0.02) possibly_damaging(0.63) TCGA-IB-7651-01 19 57175068 57175068 G A ZNF835 Missense_Mutation p.S500L 0.19 tolerated(0.05) benign(0.007) TCGA-IB-7651-01 19 57175214 57175214 G A ZNF835 Silent p.C451C 0.20 TCGA-IB-7651-01 19 57175556 57175556 G A ZNF835 Silent p.G337G 0.19 TCGA-IB-7651-01 19 57175789 57175789 G A ZNF835 Missense_Mutation p.R260C 0.16 tolerated(0.14) probably_damaging(0.98) TCGA-IB-7651-01 19 57175850 57175850 C T ZNF835 Silent p.E239E 0.19 TCGA-IB-7651-01 19 57176450 57176450 G A ZNF835 Silent p.A39A 0.15 TCGA-IB-7651-01 19 57176546 57176546 G A ZNF835 Silent p.V7V 0.20 TCGA-IB-7651-01 19 57286249 57286249 C A ZIM2 Missense_Mutation p.R464I 0.12 deleterious(0.02) possibly_damaging(0.854) TCGA-IB-7651-01 19 57324998 57324998 G A PEG3 3'UTR 0.23 TCGA-IB-7651-01 19 57325143 57325143 G T PEG3 Missense_Mutation p.A1556D 0.15 tolerated(0.52) benign(0.05) TCGA-IB-7651-01 19 57327375 57327375 G A PEG3 Missense_Mutation p.A812V 0.19 tolerated(1) benign(0.002) TCGA-IB-7651-01 19 57328183 57328183 C T PEG3 Missense_Mutation p.A543T 0.17 tolerated(0.72) benign(0.006) TCGA-IB-7651-01 19 57328491 57328491 G A PEG3 Missense_Mutation p.T440I 0.17 deleterious(0.02) benign(0.115) TCGA-IB-7651-01 19 57328690 57328690 C T PEG3 Missense_Mutation p.G374S 0.17 tolerated(0.15) benign(0.275) TCGA-IB-7651-01 19 57333086 57333086 G A PEG3 Missense_Mutation p.A201V 0.19 tolerated(0.14) benign(0.022) TCGA-IB-7651-01 19 5763298 5763298 G T CATSPERD Missense_Mutation p.K500N 0.16 deleterious(0.01) probably_damaging(0.959) TCGA-IB-7651-01 19 57646919 57646919 C T ZIM3 Nonsense_Mutation p.W262* 0.20 TCGA-IB-7651-01 19 57716805 57716805 G T ZNF264 Missense_Mutation p.E67D 0.24 tolerated(0.06) benign(0.053) TCGA-IB-7651-01 19 57722984 57722984 G T ZNF264 Missense_Mutation p.Q173H 0.21 tolerated(0.07) benign(0.013) TCGA-IB-7651-01 19 57723439 57723439 G A ZNF264 Missense_Mutation p.R325Q 0.18 tolerated(0.09) benign(0.273) TCGA-IB-7651-01 19 57746274 57746274 C T AURKC Silent p.L203L 0.18 TCGA-IB-7651-01 19 57764897 57764897 G A ZNF805 Missense_Mutation p.G237E 0.20 deleterious(0.03) possibly_damaging(0.789) TCGA-IB-7651-01 19 57765775 57765775 T C ZNF805 Missense_Mutation p.S530P 0.19 tolerated(0.06) probably_damaging(0.949) TCGA-IB-7651-01 19 57792076 57792076 T G ZNF460 5'UTR 0.23 TCGA-IB-7651-01 19 57802170 57802170 C A ZNF460 Nonsense_Mutation p.Y87* 0.20 TCGA-IB-7651-01 19 57802419 57802419 C A ZNF460 Silent p.S170S 0.19 TCGA-IB-7651-01 19 578071 578071 C T BSG Missense_Mutation p.A122V 0.20 tolerated(0.26) benign(0.002) TCGA-IB-7651-01 19 57839196 57839196 G T ZNF543 Missense_Mutation p.K122N 0.18 tolerated(0.18) benign(0.001) TCGA-IB-7651-01 19 57840074 57840074 G A ZNF543 Missense_Mutation p.R415Q 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 19 57840153 57840154 - A ZNF543 Frame_Shift_Ins p.R443Kfs*10 0.19 TCGA-IB-7651-01 19 5784052 5784052 G A PRR22 Missense_Mutation p.A69V 0.11 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 19 57840656 57840656 C T ZNF543 3'UTR 0.15 TCGA-IB-7651-01 19 5785800 5785800 C T DUS3L Missense_Mutation p.G522D 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 57868033 57868033 C A ZNF304 Missense_Mutation p.L266I 0.15 deleterious(0.01) benign(0.296) TCGA-IB-7651-01 19 57868238 57868238 C T ZNF304 Missense_Mutation p.S334F 0.17 deleterious(0.03) benign(0.01) TCGA-IB-7651-01 19 5786851 5786851 G A DUS3L Silent p.H465H 0.20 TCGA-IB-7651-01 19 57868604 57868604 T C ZNF304 Missense_Mutation p.F456S 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 57889623 57889623 G A ZNF547 3'UTR 0.18 TCGA-IB-7651-01 19 5789522 5789522 C T DUS3L Missense_Mutation p.R199H 0.15 tolerated(0.49) benign(0.004) TCGA-IB-7651-01 19 5790078 5790078 G T DUS3L Missense_Mutation p.L123M 0.07 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 19 57909869 57909869 A G ZNF548 Missense_Mutation p.T84A 0.15 tolerated(0.08) benign(0.015) TCGA-IB-7651-01 19 57910188 57910188 G T ZNF548 Missense_Mutation p.W190L 0.10 tolerated(0.78) benign(0.001) TCGA-IB-7651-01 19 57910367 57910367 G A ZNF548 Missense_Mutation p.A250T 0.20 tolerated(0.26) possibly_damaging(0.732) TCGA-IB-7651-01 19 57954768 57954768 G A ZNF749 Silent p.Q84Q 0.23 TCGA-IB-7651-01 19 57954793 57954793 C A ZNF749 Missense_Mutation p.L93M 0.21 deleterious(0.03) possibly_damaging(0.86) TCGA-IB-7651-01 19 57955243 57955243 C T ZNF749 Nonsense_Mutation p.Q243* 0.19 TCGA-IB-7651-01 19 57955694 57955694 A G ZNF749 Missense_Mutation p.H393R 0.16 tolerated(0.36) possibly_damaging(0.803) TCGA-IB-7651-01 19 57956765 57956765 C A ZNF749 Missense_Mutation p.S750Y 0.17 deleterious(0) benign(0.005) TCGA-IB-7651-01 19 57956804 57956804 A C ZNF749 Missense_Mutation p.N763T 0.15 tolerated(0.23) possibly_damaging(0.727) TCGA-IB-7651-01 19 57987053 57987053 C A AC004076.9 Missense_Mutation p.E58D 0.15 deleterious(0.04) benign(0.122) TCGA-IB-7651-01 19 57999150 57999150 C T ZNF419 5'UTR 0.22 TCGA-IB-7651-01 19 58004751 58004751 G A ZNF419 Missense_Mutation p.E277K 0.15 tolerated(0.12) benign(0.031) TCGA-IB-7651-01 19 58004803 58004803 G A ZNF419 Missense_Mutation p.G294E 0.18 deleterious(0.02) probably_damaging(0.991) TCGA-IB-7651-01 19 58018058 58018058 G A ZNF773 Missense_Mutation p.A199T 0.18 tolerated(0.38) benign(0.008) TCGA-IB-7651-01 19 58018743 58018743 G A ZNF773 Missense_Mutation p.S427N 0.21 tolerated(0.5) benign(0.001) TCGA-IB-7651-01 19 58048598 58048598 G T ZNF549 Nonsense_Mutation p.E76* 0.19 TCGA-IB-7651-01 19 58049123 58049123 G T ZNF549 Nonsense_Mutation p.E251* 0.18 TCGA-IB-7651-01 19 58058796 58058796 C T ZNF550 Silent p.S231S 0.21 TCGA-IB-7651-01 19 58059348 58059348 T G ZNF550 Missense_Mutation p.Q47H 0.17 deleterious(0) possibly_damaging(0.471) TCGA-IB-7651-01 19 58083494 58083494 A C ZNF416 Missense_Mutation p.I593S 0.16 deleterious(0) benign(0.002) TCGA-IB-7651-01 19 58101631 58101631 G A ZIK1 Missense_Mutation p.R151K 0.17 tolerated(0.47) benign(0.001) TCGA-IB-7651-01 19 58117676 58117676 C T ZNF530 Silent p.H261H 0.19 TCGA-IB-7651-01 19 58132057 58132057 A G ZNF134 Silent p.T190T 0.19 TCGA-IB-7651-01 19 58152484 58152484 G A ZNF211 Silent p.E275E 0.20 TCGA-IB-7651-01 19 58187455 58187455 G A ZSCAN4 5'UTR 0.21 TCGA-IB-7651-01 19 58189722 58189722 G A ZSCAN4 Missense_Mutation p.A251T 0.17 tolerated(0.1) benign(0.062) TCGA-IB-7651-01 19 58190148 58190148 G T ZSCAN4 Nonsense_Mutation p.E393* 0.18 TCGA-IB-7651-01 19 58198782 58198782 G A ZNF551 Missense_Mutation p.R380Q 0.17 tolerated(0.6) probably_damaging(0.996) TCGA-IB-7651-01 19 582313 582313 C T BSG Silent p.D359D 0.23 TCGA-IB-7651-01 19 58232036 58232036 T G ZNF671 Missense_Mutation p.H473P 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 58232204 58232204 C T ZNF671 Missense_Mutation p.R417Q 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 19 58238764 58238764 C T ZNF671 Missense_Mutation p.A45T 0.22 tolerated(0.51) benign(0.022) TCGA-IB-7651-01 19 58262226 58262226 G A AC003006.7 Missense_Mutation p.R36K 0.16 tolerated(0.09) possibly_damaging(0.801) TCGA-IB-7651-01 19 58290546 58290546 G A ZNF586 Silent p.R197R 0.16 TCGA-IB-7651-01 19 5831187 5831187 C T FUT6 3'UTR 0.19 TCGA-IB-7651-01 19 58320176 58320176 C A ZNF552 Missense_Mutation p.E152D 0.15 tolerated(1) benign(0.242) TCGA-IB-7651-01 19 5832292 5832292 C T FUT6 Missense_Mutation p.R96H 0.23 tolerated(0.07) benign(0.2) TCGA-IB-7651-01 19 58353296 58353296 T G ZNF587B Intron 0.19 TCGA-IB-7651-01 19 58388344 58388344 C T ZNF814 Missense_Mutation p.A35T 0.19 tolerated(0.28) probably_damaging(0.945) TCGA-IB-7651-01 19 58420404 58420404 C T ZNF417 Silent p.G414G 0.20 TCGA-IB-7651-01 19 58421078 58421078 C T ZNF417 Missense_Mutation p.A190T 0.18 tolerated(0.39) benign(0.141) TCGA-IB-7651-01 19 58421142 58421142 C T ZNF417 Silent p.E168E 0.14 TCGA-IB-7651-01 19 58423469 58423469 C T ZNF417 Missense_Mutation p.R41H 0.18 tolerated(0.98) benign(0.019) TCGA-IB-7651-01 19 58452630 58452630 C A ZNF256 Nonsense_Mutation p.E516* 0.14 TCGA-IB-7651-01 19 58470038 58470038 C A C19orf18 Nonsense_Mutation p.E194* 0.10 TCGA-IB-7651-01 19 58477896 58477896 A G C19orf18 Splice_Site p.X124_splice 0.17 TCGA-IB-7651-01 19 58490209 58490209 T C ZNF606 Silent p.K613K 0.19 TCGA-IB-7651-01 19 58490360 58490360 G T ZNF606 Missense_Mutation p.S563Y 0.25 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 19 58490962 58490962 A G ZNF606 Silent p.H362H 0.21 TCGA-IB-7651-01 19 58500015 58500015 C T ZNF606 Silent p.R84R 0.17 TCGA-IB-7651-01 19 58551856 58551856 A G ZSCAN1 Missense_Mutation p.S137G 0.07 tolerated(0.37) benign(0.006) TCGA-IB-7651-01 19 58565026 58565026 C T ZSCAN1 Silent p.G278G 0.08 TCGA-IB-7651-01 19 58578888 58578888 C T ZNF135 Nonsense_Mutation p.R370* 0.17 TCGA-IB-7651-01 19 58579766 58579766 C A ZNF135 Missense_Mutation p.D662E 0.20 tolerated(1) benign(0.028) TCGA-IB-7651-01 19 58596628 58596628 C T ZSCAN18 Silent p.S375S 0.09 TCGA-IB-7651-01 19 58639295 58639295 G T ZNF329 Missense_Mutation p.L526I 0.16 deleterious(0) probably_damaging(0.961) TCGA-IB-7651-01 19 58639933 58639933 T G ZNF329 Missense_Mutation p.K313T 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 58640736 58640736 T C ZNF329 Silent p.G45G 0.16 TCGA-IB-7651-01 19 58718468 58718468 G A ZNF274 Silent p.L212L 0.14 TCGA-IB-7651-01 19 58723727 58723727 C A ZNF274 Missense_Mutation p.L393I 0.20 tolerated(0.22) benign(0.015) TCGA-IB-7651-01 19 58773074 58773074 C A ZNF544 Missense_Mutation p.L368I 0.16 tolerated(0.97) benign(0.253) TCGA-IB-7651-01 19 58773509 58773509 A G ZNF544 Missense_Mutation p.T513A 0.20 tolerated(0.2) benign(0.042) TCGA-IB-7651-01 19 58850414 58850414 C T ZSCAN22 Missense_Mutation p.R400C 0.13 deleterious(0.02) probably_damaging(0.981) TCGA-IB-7651-01 19 58863992 58863992 C T A1BG Intron 0.18 TCGA-IB-7651-01 19 58864689 58864689 G A A1BG Silent p.V13V 0.23 TCGA-IB-7651-01 19 58864788 58864788 C T A1BG Missense_Mutation p.V6I 0.12 deleterious(0.02) benign(0.015) TCGA-IB-7651-01 19 58867645 58867645 G A ZNF497 Missense_Mutation p.R453C 0.17 tolerated(0.05) probably_damaging(0.969) TCGA-IB-7651-01 19 58879442 58879442 C T ZNF837 Missense_Mutation p.A420T 0.16 tolerated(0.52) benign(0.088) TCGA-IB-7651-01 19 58945235 58945235 G A ZNF132 Missense_Mutation p.R526C 0.19 tolerated(0.07) possibly_damaging(0.849) TCGA-IB-7651-01 19 58945596 58945596 G A ZNF132 Silent p.C405C 0.10 TCGA-IB-7651-01 19 5896970 5896970 G A NDUFA11 Missense_Mutation p.P46S 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.682) TCGA-IB-7651-01 19 58983274 58983274 G A ZNF324 Missense_Mutation p.R472Q 0.21 tolerated(0.96) benign(0.221) TCGA-IB-7651-01 19 59011712 59011712 C A SLC27A5 Missense_Mutation p.G488W 0.15 deleterious(0.01) probably_damaging(0.955) TCGA-IB-7651-01 19 59012709 59012709 C T SLC27A5 Missense_Mutation p.V376M 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 59027866 59027866 G A ZBTB45 Missense_Mutation p.P392L 0.16 tolerated(0.08) benign(0.016) TCGA-IB-7651-01 19 59028114 59028114 C A ZBTB45 Missense_Mutation p.Q309H 0.19 tolerated(0.45) benign(0.123) TCGA-IB-7651-01 19 59028774 59028774 G A ZBTB45 Silent p.S89S 0.23 TCGA-IB-7651-01 19 59063087 59063087 C T CHMP2A Missense_Mutation p.A200T 0.05 tolerated(0.29) unknown(0) TCGA-IB-7651-01 19 59065517 59065517 G A CHMP2A Silent p.A21A 0.16 TCGA-IB-7651-01 19 59067367 59067367 C T UBE2M 3'UTR 0.12 TCGA-IB-7651-01 19 59073457 59073457 G A MZF1 Silent p.R729R 0.33 TCGA-IB-7651-01 19 59082669 59082669 C T MZF1 Missense_Mutation p.E30K 0.20 deleterious(0.04) benign(0.002) TCGA-IB-7651-01 19 5928016 5928016 G A RANBP3 Missense_Mutation p.A259V 0.21 tolerated(0.05) benign(0.309) TCGA-IB-7651-01 19 603718 603718 C T HCN2 Silent p.I269I 0.14 TCGA-IB-7651-01 19 6042117 6042117 G A RFX2 Silent p.H66H 0.06 TCGA-IB-7651-01 19 6141539 6141539 T C ACSBG2 5'UTR 0.18 TCGA-IB-7651-01 19 6141553 6141553 G A ACSBG2 5'UTR 0.20 TCGA-IB-7651-01 19 6156513 6156513 T C ACSBG2 Missense_Mutation p.V153A 0.21 tolerated(1) probably_damaging(0.929) TCGA-IB-7651-01 19 6185467 6185467 G A ACSBG2 Missense_Mutation p.G448E 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-IB-7651-01 19 6213122 6213122 G A MLLT1 Silent p.F537F 0.16 TCGA-IB-7651-01 19 6213356 6213356 G A MLLT1 Silent p.L515L 0.18 TCGA-IB-7651-01 19 6213743 6213743 G A MLLT1 Silent p.Y491Y 0.16 TCGA-IB-7651-01 19 6222534 6222534 G A MLLT1 Silent p.G236G 0.23 TCGA-IB-7651-01 19 623477 623477 G A POLRMT Missense_Mutation p.P423S 0.20 tolerated(0.21) benign(0.147) TCGA-IB-7651-01 19 6270647 6270647 G A MLLT1 Missense_Mutation p.H46Y 0.16 tolerated(0.08) benign(0.19) TCGA-IB-7651-01 19 629762 629762 C T POLRMT Silent p.G200G 0.20 TCGA-IB-7651-01 19 6309846 6309846 C A ACER1 Splice_Site p.X117_splice 0.19 TCGA-IB-7651-01 19 6380220 6380220 T G GTF2F1 3'UTR 0.16 TCGA-IB-7651-01 19 6389591 6389591 C T GTF2F1 Missense_Mutation p.E64K 0.10 tolerated(0.37) probably_damaging(0.995) TCGA-IB-7651-01 19 6426528 6426528 G A SLC25A41 Missense_Mutation p.R329W 0.20 deleterious(0.05) benign(0.011) TCGA-IB-7651-01 19 6427420 6427420 G A SLC25A41 Silent p.R239R 0.15 TCGA-IB-7651-01 19 6466702 6466702 G A CRB3 Intron 0.23 TCGA-IB-7651-01 19 6467822 6467822 G A DENND1C Missense_Mutation p.T700I 0.27 tolerated_low_confidence(0.13) benign(0.048) TCGA-IB-7651-01 19 6479048 6479048 C T DENND1C Missense_Mutation p.V66M 0.18 deleterious(0.04) probably_damaging(0.984) TCGA-IB-7651-01 19 6495205 6495205 G A TUBB4A Silent p.F435F 0.19 TCGA-IB-7651-01 19 651781 651781 G A RNF126 Silent p.F91F 0.16 TCGA-IB-7651-01 19 652265 652265 C A RNF126 Missense_Mutation p.A56S 0.32 tolerated(0.94) benign(0.058) TCGA-IB-7651-01 19 6534897 6534897 G A TNFSF9 Silent p.S195S 0.30 TCGA-IB-7651-01 19 6665011 6665011 C T TNFSF14 Missense_Mutation p.V217I 0.16 deleterious(0.04) probably_damaging(0.954) TCGA-IB-7651-01 19 6684598 6684598 C A C3 Missense_Mutation p.V1365F 0.18 deleterious(0) probably_damaging(0.957) TCGA-IB-7651-01 19 6686219 6686219 C T C3 Silent p.Q1242Q 0.20 TCGA-IB-7651-01 19 6694466 6694466 C T C3 Missense_Mutation p.G1044R 0.15 tolerated(0.1) benign(0.009) TCGA-IB-7651-01 19 6694476 6694476 C A C3 Missense_Mutation p.E1040D 0.16 tolerated(1) benign(0.001) TCGA-IB-7651-01 19 6696635 6696635 A C C3 Silent p.V944V 0.17 TCGA-IB-7651-01 19 6712565 6712565 G A C3 Missense_Mutation p.T358I 0.07 deleterious(0.01) benign(0.077) TCGA-IB-7651-01 19 6732321 6732321 G A GPR108 Silent p.L360L 0.19 TCGA-IB-7651-01 19 6733016 6733016 G T GPR108 Silent p.I305I 0.12 TCGA-IB-7651-01 19 6733205 6733205 G T GPR108 Missense_Mutation p.F277L 0.18 tolerated(0.2) benign(0.006) TCGA-IB-7651-01 19 6751138 6751138 A C TRIP10 Missense_Mutation p.K518N 0.17 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 19 6751225 6751225 C A TRIP10 3'UTR 0.16 TCGA-IB-7651-01 19 6754363 6754363 C T SH2D3A Missense_Mutation p.A391T 0.15 tolerated(1) benign(0.062) TCGA-IB-7651-01 19 6754423 6754423 C T SH2D3A Missense_Mutation p.A371T 0.15 tolerated(0.05) benign(0.048) TCGA-IB-7651-01 19 6760689 6760689 C A SH2D3A Missense_Mutation p.D127Y 0.20 deleterious(0.05) possibly_damaging(0.711) TCGA-IB-7651-01 19 677877 677877 C T FSTL3 Silent p.A63A 0.19 TCGA-IB-7651-01 19 681539 681539 C T FSTL3 Missense_Mutation p.R238C 0.17 deleterious(0) probably_damaging(0.985) TCGA-IB-7651-01 19 6820720 6820720 G A VAV1 Missense_Mutation p.C71Y 0.23 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 6828154 6828154 G A VAV1 Missense_Mutation p.R332Q 0.15 deleterious(0) probably_damaging(0.945) TCGA-IB-7651-01 19 6828892 6828892 C T VAV1 Missense_Mutation p.R416W 0.15 deleterious(0) probably_damaging(0.974) TCGA-IB-7651-01 19 6836997 6836997 G A VAV1 Missense_Mutation p.G639D 0.14 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 19 6848025 6848025 G T VAV1 Nonsense_Mutation p.E677* 0.09 TCGA-IB-7651-01 19 6924844 6924844 G A EMR1 Silent p.K649K 0.20 TCGA-IB-7651-01 19 7075064 7075064 C A ZNF557 5'UTR 0.17 TCGA-IB-7651-01 19 7081411 7081411 G A ZNF557 Silent p.E96E 0.23 TCGA-IB-7651-01 19 7083365 7083365 C T ZNF557 Silent p.F301F 0.18 TCGA-IB-7651-01 19 7083484 7083484 C T ZNF557 Missense_Mutation p.T341I 0.17 tolerated(1) probably_damaging(0.919) TCGA-IB-7651-01 19 7117408 7117408 G A INSR Missense_Mutation p.R1270C 0.21 deleterious(0.05) benign(0.44) TCGA-IB-7651-01 19 7142938 7142938 C T INSR Missense_Mutation p.G811S 0.16 tolerated(0.08) benign(0.302) TCGA-IB-7651-01 19 7172365 7172365 C T INSR Missense_Mutation p.A402T 0.21 tolerated(0.15) probably_damaging(0.986) TCGA-IB-7651-01 19 746591 746591 C T PALM Missense_Mutation p.T314I 0.15 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 19 746669 746669 C A PALM Missense_Mutation p.P340H 0.21 tolerated(0.16) benign(0.008) TCGA-IB-7651-01 19 7506797 7506797 G T ARHGEF18 Splice_Site p.X219_splice 0.05 TCGA-IB-7651-01 19 7509198 7509198 G A ARHGEF18 Missense_Mutation p.R302H 0.17 tolerated(0.06) benign(0.117) TCGA-IB-7651-01 19 7531999 7531999 C A ARHGEF18 Missense_Mutation p.L814I 0.18 tolerated(0.13) probably_damaging(0.998) TCGA-IB-7651-01 19 7569075 7569075 G A C19orf45 Missense_Mutation p.A216T 0.19 deleterious(0) possibly_damaging(0.86) TCGA-IB-7651-01 19 758345 758345 C T MISP Missense_Mutation p.P467S 0.19 tolerated(0.25) benign(0.012) TCGA-IB-7651-01 19 7584405 7584405 G A ZNF358 Missense_Mutation p.D93N 0.04 tolerated(0.15) probably_damaging(0.99) TCGA-IB-7651-01 19 7591439 7591439 G A MCOLN1 Missense_Mutation p.A118T 0.16 deleterious(0.01) probably_damaging(0.963) TCGA-IB-7651-01 19 7595239 7595239 C T MCOLN1 Missense_Mutation p.T476M 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 7595344 7595344 G A MCOLN1 Missense_Mutation p.S511N 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 7606952 7606952 A G PNPLA6 Silent p.S426S 0.19 TCGA-IB-7651-01 19 7615445 7615445 G A PNPLA6 Silent p.G672G 0.21 TCGA-IB-7651-01 19 7619930 7619930 G T PNPLA6 Missense_Mutation p.R939L 0.11 deleterious(0.02) probably_damaging(0.995) TCGA-IB-7651-01 19 7671252 7671252 G T CAMSAP3 Missense_Mutation p.E166D 0.11 deleterious(0.03) benign(0.175) TCGA-IB-7651-01 19 7682952 7682952 G A CAMSAP3 3'UTR 0.25 TCGA-IB-7651-01 19 7687518 7687518 G A XAB2 Silent p.A467A 0.10 TCGA-IB-7651-01 19 7687725 7687725 G T XAB2 Missense_Mutation p.L432M 0.06 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 19 7693095 7693095 G A XAB2 Silent p.G47G 0.20 TCGA-IB-7651-01 19 7707366 7707366 C T STXBP2 Silent p.D282D 0.21 TCGA-IB-7651-01 19 7747600 7747600 G A TRAPPC5 Missense_Mutation p.S154N 0.13 tolerated(0.06) probably_damaging(0.988) TCGA-IB-7651-01 19 7796186 7796186 C T CLEC4G Silent p.A62A 0.12 TCGA-IB-7651-01 19 7797009 7797009 C T CLEC4G 5'UTR 0.17 TCGA-IB-7651-01 19 7806551 7806551 C A CD209 3'UTR 0.18 TCGA-IB-7651-01 19 7810795 7810795 C T CD209 Silent p.K119K 0.05 TCGA-IB-7651-01 19 7830519 7830519 C T CLEC4M Intron 0.17 TCGA-IB-7651-01 19 7831659 7831659 C T CLEC4M Missense_Mutation p.A301V 0.20 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 19 7927058 7927058 C T EVI5L Silent p.V565V 0.21 TCGA-IB-7651-01 19 7963918 7963918 G A LRRC8E Missense_Mutation p.G171R 0.20 tolerated(0.49) benign(0.008) TCGA-IB-7651-01 19 7974947 7974947 G A MAP2K7 Splice_Site p.X89_splice 0.08 TCGA-IB-7651-01 19 7975916 7975916 G A MAP2K7 Missense_Mutation p.D243N 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 7977320 7977320 C A MAP2K7 3'UTR 0.08 TCGA-IB-7651-01 19 8003069 8003069 G A TIMM44 Missense_Mutation p.S52F 0.17 deleterious(0) possibly_damaging(0.474) TCGA-IB-7651-01 19 8046064 8046064 C A ELAVL1 Missense_Mutation p.S60I 0.20 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 19 807883 807883 A C PTBP1 Missense_Mutation p.Q378H 0.15 tolerated(0.45) benign(0.002) TCGA-IB-7651-01 19 8155129 8155129 C T FBN3 Missense_Mutation p.R2013Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 19 8175947 8175947 C T FBN3 Missense_Mutation p.C1402Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 19 8209804 8209804 G A FBN3 Silent p.R166R 0.21 TCGA-IB-7651-01 19 828350 828350 G A AZU1 Missense_Mutation p.R60H 0.24 tolerated(0.09) benign(0.214) TCGA-IB-7651-01 19 8321538 8321538 G T CERS4 Nonsense_Mutation p.E186* 0.17 TCGA-IB-7651-01 19 8367489 8367489 G A CD320 Missense_Mutation p.A236V 0.20 tolerated(0.63) benign(0.004) TCGA-IB-7651-01 19 8381461 8381461 C T NDUFA7 Missense_Mutation p.R57H 0.18 deleterious(0) benign(0.373) TCGA-IB-7651-01 19 8386871 8386871 C A RPS28 Missense_Mutation p.S41Y 0.16 tolerated(0.17) possibly_damaging(0.565) TCGA-IB-7651-01 19 840986 840986 G A PRTN3 5'UTR 0.18 TCGA-IB-7651-01 19 8468525 8468525 C T RAB11B 3'UTR 0.23 TCGA-IB-7651-01 19 8486755 8486755 G T MARCH2 Missense_Mutation p.G11C 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-IB-7651-01 19 8495681 8495681 G A MARCH2 Missense_Mutation p.S171N 0.17 tolerated(0.1) possibly_damaging(0.698) TCGA-IB-7651-01 19 8528515 8528515 C A HNRNPM Missense_Mutation p.A128D 0.20 deleterious(0) probably_damaging(0.928) TCGA-IB-7651-01 19 8548057 8548057 C T HNRNPM Missense_Mutation p.A379V 0.12 tolerated(0.26) benign(0.002) TCGA-IB-7651-01 19 8550883 8550883 G A HNRNPM Missense_Mutation p.R524H 0.19 deleterious_low_confidence(0.04) probably_damaging(0.974) TCGA-IB-7651-01 19 8550903 8550903 C T HNRNPM Missense_Mutation p.R531C 0.17 tolerated(0.08) benign(0.033) TCGA-IB-7651-01 19 8551214 8551214 C T HNRNPM Silent p.F634F 0.10 TCGA-IB-7651-01 19 8555069 8555069 G T PRAM1 3'UTR 0.15 TCGA-IB-7651-01 19 8555099 8555099 T G PRAM1 Missense_Mutation p.N663H 0.17 tolerated(0.11) benign(0.023) TCGA-IB-7651-01 19 8555100 8555100 T G PRAM1 Missense_Mutation p.E662D 0.24 tolerated(0.29) benign(0.019) TCGA-IB-7651-01 19 8555240 8555240 C T PRAM1 Missense_Mutation p.D653N 0.20 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 19 8564513 8564513 G A PRAM1 Missense_Mutation p.P60L 0.17 tolerated(0.31) benign(0.018) TCGA-IB-7651-01 19 8578036 8578036 G A ZNF414 Nonsense_Mutation p.Q65* 0.14 TCGA-IB-7651-01 19 8595095 8595095 G A MYO1F Silent p.Y771Y 0.19 TCGA-IB-7651-01 19 8612995 8612995 G A MYO1F Silent p.F398F 0.18 TCGA-IB-7651-01 19 8619390 8619390 G A MYO1F Silent p.I99I 0.18 TCGA-IB-7651-01 19 8808336 8808336 G A ACTL9 Missense_Mutation p.A239V 0.19 tolerated(0.06) benign(0.185) TCGA-IB-7651-01 19 8808354 8808354 G A ACTL9 Missense_Mutation p.A233V 0.22 tolerated(1) possibly_damaging(0.667) TCGA-IB-7651-01 19 8808430 8808430 C T ACTL9 Missense_Mutation p.V208I 0.19 tolerated(0.41) probably_damaging(0.995) TCGA-IB-7651-01 19 8808659 8808659 G A ACTL9 Silent p.H131H 0.20 TCGA-IB-7651-01 19 8841503 8841503 G A OR2Z1 Missense_Mutation p.G38D 0.05 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 19 8841551 8841551 G A OR2Z1 Missense_Mutation p.R54Q 0.19 tolerated(0.21) benign(0.295) TCGA-IB-7651-01 19 8842076 8842076 G A OR2Z1 Missense_Mutation p.R229H 0.19 tolerated(0.4) benign(0.01) TCGA-IB-7651-01 19 8931980 8931980 G A ZNF558 Silent p.G41G 0.21 TCGA-IB-7651-01 19 8932760 8932760 A C ZNF558 Silent p.S13S 0.21 TCGA-IB-7651-01 19 8953519 8953519 G T MBD3L1 Missense_Mutation p.W55C 0.17 tolerated(0.12) probably_damaging(0.963) TCGA-IB-7651-01 19 8973992 8973992 G T MUC16 Missense_Mutation p.L14227M 0.18 probably_damaging(0.994) TCGA-IB-7651-01 19 8974076 8974076 G A MUC16 Missense_Mutation p.R14199W 0.12 benign(0.286) TCGA-IB-7651-01 19 8982221 8982221 C A MUC16 Missense_Mutation p.Q14018H 0.07 possibly_damaging(0.733) TCGA-IB-7651-01 19 8995635 8995635 C T MUC16 Missense_Mutation p.A13785T 0.19 probably_damaging(0.916) TCGA-IB-7651-01 19 8997154 8997154 C T MUC16 Missense_Mutation p.G13681D 0.18 probably_damaging(1) TCGA-IB-7651-01 19 8999547 8999547 G A MUC16 Missense_Mutation p.A13543V 0.20 probably_damaging(0.994) TCGA-IB-7651-01 19 9000566 9000566 G A MUC16 Missense_Mutation p.T13473I 0.19 probably_damaging(0.943) TCGA-IB-7651-01 19 9002161 9002161 G A MUC16 Missense_Mutation p.T13448I 0.11 probably_damaging(0.991) TCGA-IB-7651-01 19 901497 901497 C T R3HDM4 Silent p.L92L 0.16 TCGA-IB-7651-01 19 9015664 9015664 C T MUC16 Missense_Mutation p.G12720D 0.17 probably_damaging(0.945) TCGA-IB-7651-01 19 901987 901987 C T R3HDM4 Missense_Mutation p.R72H 0.16 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 19 9046155 9046155 G T MUC16 Missense_Mutation p.L11826I 0.22 benign(0.007) TCGA-IB-7651-01 19 9046323 9046323 T C MUC16 Missense_Mutation p.T11770A 0.20 benign(0.145) TCGA-IB-7651-01 19 9047105 9047105 A C MUC16 Missense_Mutation p.F11509C 0.16 benign(0.016) TCGA-IB-7651-01 19 9047793 9047793 T C MUC16 Missense_Mutation p.T11280A 0.16 possibly_damaging(0.682) TCGA-IB-7651-01 19 9048279 9048279 G T MUC16 Missense_Mutation p.L11118I 0.19 benign(0.016) TCGA-IB-7651-01 19 9048837 9048837 C A MUC16 Nonsense_Mutation p.G10932* 0.20 TCGA-IB-7651-01 19 9054331 9054331 C A MUC16 Nonsense_Mutation p.E10431* 0.15 TCGA-IB-7651-01 19 9057514 9057514 C A MUC16 Missense_Mutation p.A9978S 0.19 unknown(0) TCGA-IB-7651-01 19 9058483 9058483 T C MUC16 Missense_Mutation p.T9655A 0.22 unknown(0) TCGA-IB-7651-01 19 9060121 9060121 T A MUC16 Missense_Mutation p.T9109S 0.18 unknown(0) TCGA-IB-7651-01 19 9061129 9061129 T C MUC16 Missense_Mutation p.I8773V 0.20 unknown(0) TCGA-IB-7651-01 19 9062517 9062517 C A MUC16 Missense_Mutation p.R8310M 0.20 unknown(0) TCGA-IB-7651-01 19 9066782 9066782 C T MUC16 Silent p.A6888A 0.16 TCGA-IB-7651-01 19 9067822 9067822 T C MUC16 Missense_Mutation p.T6542A 0.20 unknown(0) TCGA-IB-7651-01 19 9067890 9067890 G A MUC16 Missense_Mutation p.A6519V 0.22 unknown(0) TCGA-IB-7651-01 19 9070734 9070734 G A MUC16 Missense_Mutation p.T5571I 0.18 unknown(0) TCGA-IB-7651-01 19 9072986 9072986 A G MUC16 Silent p.D4820D 0.17 TCGA-IB-7651-01 19 9075035 9075035 G T MUC16 Silent p.L4137L 0.16 TCGA-IB-7651-01 19 9084855 9084855 G T MUC16 Silent p.T2320T 0.17 TCGA-IB-7651-01 19 9085462 9085462 G A MUC16 Missense_Mutation p.A2118V 0.17 unknown(0) TCGA-IB-7651-01 19 9085546 9085546 A C MUC16 Missense_Mutation p.F2090C 0.18 unknown(0) TCGA-IB-7651-01 19 9089523 9089523 C T MUC16 Silent p.K764K 0.17 TCGA-IB-7651-01 19 9090171 9090171 G T MUC16 Silent p.P548P 0.16 TCGA-IB-7651-01 19 9090699 9090699 C A MUC16 Missense_Mutation p.E372D 0.19 unknown(0) TCGA-IB-7651-01 19 9204616 9204616 C T OR1M1 Silent p.G232G 0.18 TCGA-IB-7651-01 19 9236904 9236904 G A OR7G3 Silent p.C241C 0.04 TCGA-IB-7651-01 19 9237060 9237060 A G OR7G3 Silent p.C189C 0.21 TCGA-IB-7651-01 19 9271217 9271217 T C ZNF317 Missense_Mutation p.V299A 0.23 deleterious(0) possibly_damaging(0.676) TCGA-IB-7651-01 19 9296785 9296785 C A OR7D2 Missense_Mutation p.L110M 0.17 tolerated_low_confidence(0.34) benign(0.061) TCGA-IB-7651-01 19 9324922 9324922 C T OR7D4 Missense_Mutation p.V198I 0.18 tolerated(0.15) benign(0.008) TCGA-IB-7651-01 19 9325388 9325388 G A OR7D4 Silent p.N42N 0.20 TCGA-IB-7651-01 19 9325480 9325480 A C OR7D4 Missense_Mutation p.F12V 0.10 deleterious(0) possibly_damaging(0.871) TCGA-IB-7651-01 19 9362113 9362113 C A OR7E24 Missense_Mutation p.L132I 0.19 tolerated(0.07) benign(0.226) TCGA-IB-7651-01 19 9362432 9362432 A C OR7E24 Missense_Mutation p.K238T 0.20 deleterious(0.02) possibly_damaging(0.58) TCGA-IB-7651-01 19 9406257 9406257 C A ZNF699 Missense_Mutation p.S608I 0.20 tolerated(0.33) possibly_damaging(0.875) TCGA-IB-7651-01 19 9452958 9452958 C T ZNF559 Silent p.A277A 0.17 TCGA-IB-7651-01 19 9453386 9453386 G A ZNF559 Missense_Mutation p.R420Q 0.17 tolerated(0.31) possibly_damaging(0.77) TCGA-IB-7651-01 19 9492029 9492029 A G ZNF177 Missense_Mutation p.D341G 0.19 tolerated(0.05) possibly_damaging(0.517) TCGA-IB-7651-01 19 9639635 9639635 C T ZNF426 Silent p.K362K 0.20 TCGA-IB-7651-01 19 964313 964313 C A ARID3A Missense_Mutation p.L278M 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 19 9644530 9644530 T C ZNF426 Missense_Mutation p.N77S 0.09 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 19 971939 971939 C T ARID3A Silent p.G552G 0.18 TCGA-IB-7651-01 19 972068 972068 G A ARID3A 3'UTR 0.13 TCGA-IB-7651-01 19 9721015 9721015 C T ZNF561 Missense_Mutation p.R441Q 0.16 tolerated(0.06) benign(0.011) TCGA-IB-7651-01 19 9806925 9806925 C A ZNF812 Splice_Site 0.26 TCGA-IB-7651-01 19 9869139 9869139 C A ZNF846 Missense_Mutation p.R205I 0.15 deleterious(0.01) possibly_damaging(0.898) TCGA-IB-7651-01 19 9921948 9921948 C A FBXL12 Missense_Mutation p.S202I 0.22 tolerated(0.14) benign(0.11) TCGA-IB-7651-01 19 9949194 9949194 C T PIN1 Silent p.N47N 0.20 TCGA-IB-7651-01 19 9964924 9964924 C T OLFM2 Missense_Mutation p.G435S 0.20 tolerated(0.06) probably_damaging(1) TCGA-IB-7651-01 19 9965413 9965413 C T OLFM2 Missense_Mutation p.V272M 0.17 deleterious(0) possibly_damaging(0.879) TCGA-IB-7651-01 19 9965432 9965432 C T OLFM2 Silent p.P265P 0.22 TCGA-IB-7651-01 19 9968460 9968460 C A OLFM2 Missense_Mutation p.E97D 0.18 deleterious(0.02) benign(0.17) TCGA-IB-7651-01 19 9971444 9971444 G A OLFM2 Silent p.G30G 0.17 TCGA-IB-7651-01 1 100155441 100155441 A G PALMD Intron 0.09 TCGA-IB-7651-01 1 10032097 10032097 T C NMNAT1 5'UTR 0.11 TCGA-IB-7651-01 1 100349724 100349724 C T AGL Missense_Mutation p.T786M 0.09 tolerated(0.08) benign(0.025) TCGA-IB-7651-01 1 100356893 100356893 G A AGL Missense_Mutation p.R977Q 0.21 tolerated(0.17) benign(0.197) TCGA-IB-7651-01 1 100464905 100464905 G T SLC35A3 Silent p.G92G 0.08 TCGA-IB-7651-01 1 100472710 100472710 C T SLC35A3 Nonsense_Mutation p.Q155* 0.08 TCGA-IB-7651-01 1 100624921 100624921 A C LRRC39 Silent p.L90L 0.20 TCGA-IB-7651-01 1 100963751 100963751 C T CDC14A Missense_Mutation p.A470V 0.07 tolerated(0.09) benign(0.003) TCGA-IB-7651-01 1 100964692 100964692 C T CDC14A Silent p.N543N 0.11 TCGA-IB-7651-01 1 101190358 101190358 T C VCAM1 Silent p.A280A 0.09 TCGA-IB-7651-01 1 101342387 101342387 C A EXTL2 Missense_Mutation p.S156I 0.18 tolerated(0.11) probably_damaging(1) TCGA-IB-7651-01 1 101343202 101343202 G T EXTL2 Missense_Mutation p.A88D 0.11 tolerated(0.06) probably_damaging(0.982) TCGA-IB-7651-01 1 101377772 101377772 T C SLC30A7 Silent p.G163G 0.13 TCGA-IB-7651-01 1 101456141 101456141 G A DPH5 Silent p.A227A 0.19 TCGA-IB-7651-01 1 101705127 101705127 C T S1PR1 Missense_Mutation p.P196L 0.11 deleterious(0.01) probably_damaging(0.983) TCGA-IB-7651-01 1 10205050 10205050 G A UBE4B Missense_Mutation p.A806T 0.08 deleterious(0) possibly_damaging(0.714) TCGA-IB-7651-01 1 1021354 1021354 A G C1orf159 Missense_Mutation p.F117L 0.08 tolerated(0.81) benign(0.045) TCGA-IB-7651-01 1 10239537 10239537 G A UBE4B Missense_Mutation p.R1255H 0.11 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 10240156 10240156 G A UBE4B 3'UTR 0.25 TCGA-IB-7651-01 1 103343534 103343534 G T COL11A1 3'UTR 0.20 TCGA-IB-7651-01 1 103496747 103496747 G T COL11A1 Nonsense_Mutation p.Y235* 0.21 TCGA-IB-7651-01 1 103544316 103544316 A C COL11A1 Missense_Mutation p.V129G 0.19 probably_damaging(0.99) TCGA-IB-7651-01 1 10363814 10363814 C T KIF1B Intron 0.19 TCGA-IB-7651-01 1 10386320 10386320 G A KIF1B Missense_Mutation p.A897T 0.20 tolerated(1) benign(0) TCGA-IB-7651-01 1 104112881 104112881 G A AMY2B Intron 0.13 TCGA-IB-7651-01 1 10412734 10412734 C T KIF1B Missense_Mutation p.A1286V 0.19 deleterious(0.04) possibly_damaging(0.605) TCGA-IB-7651-01 1 10459163 10459163 C T PGD 5'UTR 0.14 TCGA-IB-7651-01 1 10473299 10473299 A G PGD Missense_Mutation p.T279A 0.12 deleterious(0.02) probably_damaging(0.941) TCGA-IB-7651-01 1 10689807 10689807 C T PEX14 Silent p.G299G 0.20 TCGA-IB-7651-01 1 10689966 10689966 C T PEX14 Silent p.G352G 0.23 TCGA-IB-7651-01 1 10699493 10699493 C T CASZ1 Missense_Mutation p.E1596K 0.12 deleterious(0.04) probably_damaging(0.916) TCGA-IB-7651-01 1 10714519 10714519 C T CASZ1 Missense_Mutation p.D599N 0.10 tolerated(0.09) possibly_damaging(0.473) TCGA-IB-7651-01 1 10720073 10720073 C T CASZ1 Silent p.E342E 0.22 TCGA-IB-7651-01 1 10725412 10725412 C A CASZ1 Missense_Mutation p.R78L 0.24 tolerated_low_confidence(0.38) benign(0.085) TCGA-IB-7651-01 1 107599623 107599623 C A PRMT6 Missense_Mutation p.L96M 0.24 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 107973466 107973466 G A NTNG1 Silent p.Q394Q 0.09 TCGA-IB-7651-01 1 108742604 108742604 T C SLC25A24 Missense_Mutation p.I53V 0.12 tolerated(1) benign(0.005) TCGA-IB-7651-01 1 109241961 109241961 T C PRPF38B Silent p.S320S 0.12 TCGA-IB-7651-01 1 109394773 109394773 G A AKNAD1 Missense_Mutation p.L172F 0.22 deleterious(0.04) probably_damaging(0.987) TCGA-IB-7651-01 1 109440714 109440715 - T GPSM2 Frame_Shift_Ins p.Y185Lfs*2 0.13 TCGA-IB-7651-01 1 109533934 109533934 A G WDR47 Missense_Mutation p.V578A 0.09 tolerated(0.85) benign(0) TCGA-IB-7651-01 1 109547290 109547290 C T WDR47 Missense_Mutation p.G401D 0.09 tolerated(0.65) benign(0) TCGA-IB-7651-01 1 109554167 109554167 C A WDR47 Missense_Mutation p.E174D 0.10 tolerated(0.13) benign(0.235) TCGA-IB-7651-01 1 109714519 109714519 G A KIAA1324 Missense_Mutation p.A167T 0.09 tolerated(0.17) benign(0.278) TCGA-IB-7651-01 1 109793139 109793139 G A CELSR2 Silent p.Q146Q 0.11 TCGA-IB-7651-01 1 109794810 109794810 C T CELSR2 Silent p.T703T 0.11 TCGA-IB-7651-01 1 109808459 109808459 C T CELSR2 Missense_Mutation p.P1944S 0.22 tolerated(0.29) benign(0.05) TCGA-IB-7651-01 1 109811248 109811248 C T CELSR2 Missense_Mutation p.R2122W 0.09 deleterious(0.05) probably_damaging(0.97) TCGA-IB-7651-01 1 109815515 109815515 C T CELSR2 Missense_Mutation p.A2735V 0.11 deleterious(0.02) probably_damaging(0.991) TCGA-IB-7651-01 1 109859483 109859483 G A SORT1 Missense_Mutation p.P747S 0.12 tolerated(0.15) benign(0.007) TCGA-IB-7651-01 1 109954798 109954798 C T PSMA5 Nonsense_Mutation p.W100* 0.07 TCGA-IB-7651-01 1 110051532 110051532 C T AMIGO1 Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0) benign(0.38) TCGA-IB-7651-01 1 11008344 11008344 C T C1orf127 Silent p.T616T 0.08 TCGA-IB-7651-01 1 110085846 110085846 G A GPR61 Missense_Mutation p.A68T 0.20 tolerated(0.29) benign(0.064) TCGA-IB-7651-01 1 110116530 110116530 G A GNAI3 Silent p.E58E 0.19 TCGA-IB-7651-01 1 110141551 110141551 G T GNAI3 3'Flank 0.19 TCGA-IB-7651-01 1 110199483 110199483 G A GSTM4 Intron 0.12 TCGA-IB-7651-01 1 110199939 110199939 C T GSTM4 Intron 0.22 TCGA-IB-7651-01 1 110211562 110211562 G A GSTM2 Missense_Mutation p.R43K 0.22 tolerated(0.32) benign(0.005) TCGA-IB-7651-01 1 110294717 110294717 C T EPS8L3 Missense_Mutation p.S446N 0.20 deleterious(0.04) possibly_damaging(0.65) TCGA-IB-7651-01 1 1104462 1104462 C T TTLL10 5'Flank 0.12 TCGA-IB-7651-01 1 110466000 110466000 C T CSF1 Missense_Mutation p.P253S 0.13 tolerated(0.12) benign(0.153) TCGA-IB-7651-01 1 110555585 110555585 A C AHCYL1 Missense_Mutation p.T182P 0.18 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 1 110580524 110580524 G T STRIP1 Missense_Mutation p.E64D 0.14 tolerated(0.6) benign(0.018) TCGA-IB-7651-01 1 110584457 110584457 C A STRIP1 Missense_Mutation p.L287I 0.20 deleterious(0.02) probably_damaging(0.992) TCGA-IB-7651-01 1 110716645 110716645 C A SLC6A17 Silent p.I165I 0.09 TCGA-IB-7651-01 1 110719341 110719341 C T SLC6A17 Silent p.L282L 0.08 TCGA-IB-7651-01 1 110741029 110741029 G A SLC6A17 Missense_Mutation p.G716D 0.11 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-IB-7651-01 1 110766034 110766034 C T KCNC4 Missense_Mutation p.A376V 0.10 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 110766507 110766507 G A KCNC4 Missense_Mutation p.E534K 0.11 deleterious(0.03) benign(0.083) TCGA-IB-7651-01 1 11082189 11082189 G A TARDBP Silent p.Q241Q 0.10 TCGA-IB-7651-01 1 110882581 110882581 C T RBM15 Missense_Mutation p.A185V 0.11 tolerated(0.64) possibly_damaging(0.565) TCGA-IB-7651-01 1 110884176 110884176 C T RBM15 Nonsense_Mutation p.R717* 0.07 TCGA-IB-7651-01 1 110888246 110888246 T C RBM15 3'UTR 0.04 TCGA-IB-7651-01 1 110946568 110946568 G T LAMTOR5 Missense_Mutation p.P145H 0.19 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 1 111060647 111060647 G T KCNA10 Missense_Mutation p.L255I 0.11 tolerated(0.42) benign(0.001) TCGA-IB-7651-01 1 111060769 111060769 G A KCNA10 Missense_Mutation p.A214V 0.23 tolerated(0.09) benign(0.103) TCGA-IB-7651-01 1 111060913 111060913 A C KCNA10 Missense_Mutation p.I166S 0.21 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 1 11106656 11106656 G A MASP2 Silent p.N123N 0.13 TCGA-IB-7651-01 1 111216054 111216054 C T KCNA3 Missense_Mutation p.V460M 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 111216303 111216303 G A KCNA3 Silent p.L377L 0.09 TCGA-IB-7651-01 1 11142806 11142806 G T EXOSC10 Missense_Mutation p.L407M 0.12 tolerated(0.09) probably_damaging(1) TCGA-IB-7651-01 1 111490729 111490729 T C LRIF1 Missense_Mutation p.N721S 0.10 tolerated(0.27) benign(0.005) TCGA-IB-7651-01 1 1115463 1115463 G A TTLL10 Silent p.R83R 0.28 TCGA-IB-7651-01 1 11167483 11167483 G T MTOR 3'UTR 0.17 TCGA-IB-7651-01 1 111690517 111690517 C T CEPT1 Missense_Mutation p.R61W 0.21 deleterious(0.02) possibly_damaging(0.53) TCGA-IB-7651-01 1 111738639 111738639 C T DENND2D Missense_Mutation p.A182T 0.17 deleterious(0.02) probably_damaging(1) TCGA-IB-7651-01 1 11194521 11194521 G A MTOR Silent p.I1711I 0.11 TCGA-IB-7651-01 1 111966237 111966237 G A OVGP1 Silent p.D137D 0.16 TCGA-IB-7651-01 1 111984012 111984012 C T WDR77 Splice_Site p.X290_splice 0.21 TCGA-IB-7651-01 1 11199383 11199383 T C MTOR Missense_Mutation p.N1703S 0.10 deleterious(0.03) benign(0.058) TCGA-IB-7651-01 1 111999344 111999344 T G ATP5F1 Silent p.V160V 0.10 TCGA-IB-7651-01 1 112020639 112020639 C A C1orf162 Missense_Mutation p.A121D 0.10 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 1 112045922 112045922 C T ADORA3 Missense_Mutation p.E19K 0.13 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-IB-7651-01 1 112281905 112281905 G A FAM212B 5'UTR 0.18 TCGA-IB-7651-01 1 112309448 112309448 G A DDX20 Missense_Mutation p.R801K 0.16 tolerated_low_confidence(0.09) probably_damaging(0.99) TCGA-IB-7651-01 1 112524699 112524699 G T KCND3 Missense_Mutation p.P217Q 0.18 tolerated(0.2) benign(0.003) TCGA-IB-7651-01 1 11270930 11270930 G T MTOR Missense_Mutation p.L1199M 0.17 tolerated(0.29) benign(0.018) TCGA-IB-7651-01 1 113010095 113010095 C T WNT2B 5'UTR 0.22 TCGA-IB-7651-01 1 113059749 113059749 C T WNT2B Missense_Mutation p.R230W 0.21 tolerated(0.14) probably_damaging(0.948) TCGA-IB-7651-01 1 113059807 113059807 G A WNT2B Missense_Mutation p.R249H 0.19 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 1 113068510 113068510 G A ST7L 3'UTR 0.16 TCGA-IB-7651-01 1 113098550 113098550 G T ST7L Missense_Mutation p.L446I 0.10 tolerated(0.11) probably_damaging(0.999) TCGA-IB-7651-01 1 11317062 11317062 G A MTOR Silent p.Y144Y 0.15 TCGA-IB-7651-01 1 113232719 113232719 C T MOV10 Missense_Mutation p.R279C 0.21 tolerated(0.19) benign(0.006) TCGA-IB-7651-01 1 113238174 113238174 G A MOV10 Missense_Mutation p.R586H 0.11 tolerated(0.14) benign(0.013) TCGA-IB-7651-01 1 113239108 113239108 G A MOV10 Missense_Mutation p.D645N 0.10 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 113242307 113242307 G A MOV10 Missense_Mutation p.V862M 0.11 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 113242367 113242367 C T MOV10 Nonsense_Mutation p.R882* 0.10 TCGA-IB-7651-01 1 113243054 113243054 C A MOV10 Missense_Mutation p.D979E 0.13 tolerated(0.44) benign(0.013) TCGA-IB-7651-01 1 113269306 113269306 G A FAM19A3 3'UTR 0.12 TCGA-IB-7651-01 1 113471841 113471841 G A SLC16A1 Silent p.I30I 0.07 TCGA-IB-7651-01 1 113655143 113655143 G A LRIG2 Missense_Mutation p.R614H 0.22 deleterious(0) possibly_damaging(0.479) TCGA-IB-7651-01 1 113657135 113657135 C A LRIG2 Missense_Mutation p.P723T 0.09 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 1 113662141 113662141 C T LRIG2 Silent p.S989S 0.12 TCGA-IB-7651-01 1 113666508 113666508 C T LRIG2 Missense_Mutation p.R995W 0.21 deleterious(0) benign(0.386) TCGA-IB-7651-01 1 114185035 114185035 A C MAGI3 Missense_Mutation p.E621D 0.16 deleterious(0) benign(0.309) TCGA-IB-7651-01 1 114215988 114215988 C T MAGI3 Silent p.G1030G 0.18 TCGA-IB-7651-01 1 114255905 114255905 C T PHTF1 Missense_Mutation p.R260H 0.12 tolerated(0.53) benign(0) TCGA-IB-7651-01 1 114340180 114340180 C T RSBN1 Silent p.E394E 0.11 TCGA-IB-7651-01 1 114414173 114414173 C T PTPN22 Missense_Mutation p.A25T 0.18 deleterious(0.05) benign(0.029) TCGA-IB-7651-01 1 114423605 114423605 A C BCL2L15 3'UTR 0.16 TCGA-IB-7651-01 1 114429225 114429225 A G BCL2L15 Silent p.G61G 0.17 TCGA-IB-7651-01 1 114440517 114440517 G A AP4B1 Missense_Mutation p.T416I 0.20 tolerated(0.31) benign(0.009) TCGA-IB-7651-01 1 114442414 114442414 T C AP4B1 Intron 0.21 TCGA-IB-7651-01 1 114442925 114442925 G T AP4B1 Missense_Mutation p.L239M 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-IB-7651-01 1 114443916 114443916 G A AP4B1 Silent p.L187L 0.20 TCGA-IB-7651-01 1 114445332 114445332 G A AP4B1 Missense_Mutation p.T89M 0.10 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 1 114448377 114448377 C T DCLRE1B Missense_Mutation p.L57F 0.17 deleterious(0) probably_damaging(0.955) TCGA-IB-7651-01 1 114483457 114483457 C A HIPK1 Missense_Mutation p.T151N 0.18 tolerated(0.32) benign(0.004) TCGA-IB-7651-01 1 114682402 114682402 G A SYT6 Missense_Mutation p.A31V 0.09 tolerated(0.11) benign(0.107) TCGA-IB-7651-01 1 114948188 114948188 G A TRIM33 Missense_Mutation p.S871L 0.22 deleterious(0.04) benign(0.028) TCGA-IB-7651-01 1 114968227 114968227 C T TRIM33 Silent p.Q513Q 0.19 TCGA-IB-7651-01 1 115128148 115128148 G A DENND2C 3'UTR 0.12 TCGA-IB-7651-01 1 115252229 115252229 G A NRAS Silent p.Y137Y 0.12 TCGA-IB-7651-01 1 115263337 115263337 G A CSDE1 Silent p.G671G 0.18 TCGA-IB-7651-01 1 115269646 115269646 G A CSDE1 Silent p.A520A 0.20 TCGA-IB-7651-01 1 115272879 115272879 C A CSDE1 Missense_Mutation p.K498N 0.08 tolerated(0.11) benign(0.382) TCGA-IB-7651-01 1 115272969 115272969 G A CSDE1 Silent p.S468S 0.19 TCGA-IB-7651-01 1 1153037 1153037 G A SDF4 Missense_Mutation p.A315V 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 115316843 115316843 G T SIKE1 3'UTR 0.15 TCGA-IB-7651-01 1 1154014 1154014 C T SDF4 Splice_Site p.X246_splice 0.13 TCGA-IB-7651-01 1 115537711 115537711 C T SYCP1 3'UTR 0.11 TCGA-IB-7651-01 1 115601596 115601596 G A TSPAN2 Nonsense_Mutation p.R118* 0.22 TCGA-IB-7651-01 1 11561444 11561444 C T PTCHD2 Missense_Mutation p.S132F 0.24 deleterious_low_confidence(0) possibly_damaging(0.828) TCGA-IB-7651-01 1 11561540 11561540 G A PTCHD2 Missense_Mutation p.R164H 0.19 tolerated_low_confidence(0.4) benign(0.004) TCGA-IB-7651-01 1 11561811 11561811 G A PTCHD2 Silent p.S254S 0.12 TCGA-IB-7651-01 1 115829086 115829086 C T NGF Missense_Mutation p.A111T 0.23 tolerated(0.54) benign(0.004) TCGA-IB-7651-01 1 115829359 115829359 G A NGF Missense_Mutation p.P20S 0.13 tolerated(0.17) benign(0.301) TCGA-IB-7651-01 1 116233771 116233771 C T VANGL1 Missense_Mutation p.P449L 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 116380583 116380583 G A NHLH2 3'UTR 0.20 TCGA-IB-7651-01 1 116562216 116562216 C T SLC22A15 Missense_Mutation p.A105V 0.09 tolerated(0.19) possibly_damaging(0.642) TCGA-IB-7651-01 1 116577810 116577810 T G SLC22A15 Missense_Mutation p.F316C 0.20 deleterious(0) probably_damaging(0.926) TCGA-IB-7651-01 1 116943830 116943830 G A ATP1A1 Missense_Mutation p.D933N 0.07 tolerated(0.07) probably_damaging(0.969) TCGA-IB-7651-01 1 117078761 117078761 G A CD58 Nonsense_Mutation p.R152* 0.21 TCGA-IB-7651-01 1 117120136 117120136 A G IGSF3 Missense_Mutation p.F1148S 0.18 deleterious(0) benign(0.147) TCGA-IB-7651-01 1 117159032 117159032 A G IGSF3 Missense_Mutation p.Y31H 0.09 deleterious(0) possibly_damaging(0.793) TCGA-IB-7651-01 1 11718605 11718605 C A FBXO44 Silent p.S136S 0.20 TCGA-IB-7651-01 1 117297122 117297122 T G CD2 Missense_Mutation p.F3C 0.19 deleterious(0) benign(0.294) TCGA-IB-7651-01 1 117297274 117297274 C T CD2 Missense_Mutation p.T28M 0.10 tolerated(0.1) benign(0.301) TCGA-IB-7651-01 1 117556224 117556224 T C CD101 Silent p.S346S 0.09 TCGA-IB-7651-01 1 117568492 117568492 G A CD101 Silent p.E930E 0.15 TCGA-IB-7651-01 1 117618864 117618864 A C TTF2 Missense_Mutation p.Q446H 0.19 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 1 117658224 117658224 C A TRIM45 Missense_Mutation p.W480C 0.08 tolerated(0.56) benign(0.004) TCGA-IB-7651-01 1 11766469 11766469 C A DRAXIN Missense_Mutation p.P52T 0.21 tolerated(0.24) possibly_damaging(0.804) TCGA-IB-7651-01 1 11766593 11766593 C A DRAXIN Missense_Mutation p.A93D 0.20 tolerated(0.34) benign(0.222) TCGA-IB-7651-01 1 117695864 117695864 G T VTCN1 Missense_Mutation p.F191L 0.08 tolerated(1) benign(0.006) TCGA-IB-7651-01 1 11775243 11775243 C T DRAXIN Silent p.F305F 0.22 TCGA-IB-7651-01 1 117944805 117944805 C T MAN1A2 Intron 0.11 TCGA-IB-7651-01 1 117945040 117945040 G A MAN1A2 Missense_Mutation p.E179K 0.19 tolerated(0.25) benign(0.002) TCGA-IB-7651-01 1 118441693 118441693 G T GDAP2 Missense_Mutation p.P261H 0.09 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 118441835 118441835 T C GDAP2 Missense_Mutation p.T214A 0.11 tolerated(0.22) benign(0.002) TCGA-IB-7651-01 1 118455300 118455300 G A GDAP2 Nonsense_Mutation p.R108* 0.18 TCGA-IB-7651-01 1 118462854 118462854 G A GDAP2 Nonsense_Mutation p.R43* 0.09 TCGA-IB-7651-01 1 118492397 118492397 A G WDR3 Silent p.A516A 0.20 TCGA-IB-7651-01 1 118495213 118495213 G A WDR3 Silent p.S693S 0.22 TCGA-IB-7651-01 1 118501532 118501532 G T WDR3 Splice_Site p.X861_splice 0.08 TCGA-IB-7651-01 1 11860309 11860309 G A MTHFR Silent p.I182I 0.19 TCGA-IB-7651-01 1 11863151 11863151 T C MTHFR Missense_Mutation p.N8S 0.12 tolerated_low_confidence(0.66) benign(0.001) TCGA-IB-7651-01 1 118727776 118727776 G A SPAG17 Missense_Mutation p.A2V 0.22 deleterious(0.01) possibly_damaging(0.886) TCGA-IB-7651-01 1 11898394 11898394 C T CLCN6 Silent p.S766S 0.10 TCGA-IB-7651-01 1 11898697 11898697 G A CLCN6 Missense_Mutation p.V837M 0.11 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 1 119427768 119427768 C T TBX15 Missense_Mutation p.G360S 0.10 tolerated(0.77) benign(0.004) TCGA-IB-7651-01 1 119474288 119474288 G A TBX15 Missense_Mutation p.R19W 0.12 deleterious(0) probably_damaging(0.957) TCGA-IB-7651-01 1 11980383 11980383 G T KIAA2013 Missense_Mutation p.P632T 0.09 tolerated_low_confidence(0.19) probably_damaging(0.994) TCGA-IB-7651-01 1 119923708 119923708 A C HAO2 5'UTR 0.09 TCGA-IB-7651-01 1 119929252 119929252 C T HAO2 Missense_Mutation p.A190V 0.22 deleterious(0.03) benign(0.003) TCGA-IB-7651-01 1 12004699 12004699 G A PLOD1 Intron 0.17 TCGA-IB-7651-01 1 120056800 120056800 C A HSD3B1 Missense_Mutation p.F218L 0.22 tolerated(0.68) benign(0.012) TCGA-IB-7651-01 1 120057147 120057147 C T HSD3B1 Missense_Mutation p.A334V 0.12 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 1 120165879 120165879 C T ZNF697 Missense_Mutation p.V363M 0.20 tolerated(0.19) benign(0.047) TCGA-IB-7651-01 1 120277277 120277277 C T PHGDH Silent p.I177I 0.10 TCGA-IB-7651-01 1 120284428 120284428 G A PHGDH Missense_Mutation p.A373T 0.12 deleterious(0) probably_damaging(0.943) TCGA-IB-7651-01 1 120295298 120295298 C T HMGCS2 Splice_Site p.X432_splice 0.17 TCGA-IB-7651-01 1 120438762 120438762 C T ADAM30 Silent p.L66L 0.24 TCGA-IB-7651-01 1 120457883 120457883 G T NOTCH2 3'UTR 0.19 TCGA-IB-7651-01 1 120458178 120458178 C T NOTCH2 Silent p.Q2389Q 0.13 TCGA-IB-7651-01 1 120466323 120466323 G T NOTCH2 Missense_Mutation p.A1599D 0.10 tolerated(0.59) benign(0.046) TCGA-IB-7651-01 1 120483361 120483361 G A NOTCH2 Silent p.G1000G 0.23 TCGA-IB-7651-01 1 120506274 120506274 C A NOTCH2 Missense_Mutation p.S613I 0.10 deleterious(0) possibly_damaging(0.739) TCGA-IB-7651-01 1 12052696 12052696 G A MFN2 Missense_Mutation p.G87D 0.18 tolerated(0.13) probably_damaging(0.987) TCGA-IB-7651-01 1 120906259 120906259 C T RP11-439A17.4 5'Flank 0.10 TCGA-IB-7651-01 1 120927037 120927037 G T FCGR1B 3'UTR 0.10 TCGA-IB-7651-01 1 120930255 120930255 C T FCGR1B Missense_Mutation p.E116K 0.19 deleterious(0.05) probably_damaging(1) TCGA-IB-7651-01 1 1222152 1222152 A G SCNN1D Missense_Mutation p.S306G 0.17 deleterious(0.03) benign(0.002) TCGA-IB-7651-01 1 12251090 12251090 G T TNFRSF1B Missense_Mutation p.Q85H 0.09 deleterious(0.01) possibly_damaging(0.879) TCGA-IB-7651-01 1 12252968 12252968 C T TNFRSF1B Silent p.C200C 0.06 TCGA-IB-7651-01 1 1225717 1225717 C T SCNN1D Missense_Mutation p.P577S 0.10 deleterious(0.01) possibly_damaging(0.904) TCGA-IB-7651-01 1 1226291 1226291 C T SCNN1D Missense_Mutation p.T645M 0.19 tolerated(0.52) benign(0.009) TCGA-IB-7651-01 1 12266843 12266843 C T TNFRSF1B Silent p.I384I 0.20 TCGA-IB-7651-01 1 12309338 12309338 C A VPS13D Missense_Mutation p.P169H 0.07 probably_damaging(0.996) TCGA-IB-7651-01 1 12368618 12368618 C A VPS13D Silent p.S2190S 0.12 TCGA-IB-7651-01 1 12368655 12368655 G A VPS13D Missense_Mutation p.E2203K 0.10 possibly_damaging(0.793) TCGA-IB-7651-01 1 12371629 12371629 G A VPS13D Missense_Mutation p.E2257K 0.09 probably_damaging(0.981) TCGA-IB-7651-01 1 12374263 12374263 G A VPS13D Missense_Mutation p.D2343N 0.10 probably_damaging(0.99) TCGA-IB-7651-01 1 12395787 12395787 G A VPS13D Silent p.S2818S 0.10 TCGA-IB-7651-01 1 12416088 12416088 G A VPS13D Missense_Mutation p.R3271Q 0.21 probably_damaging(0.947) TCGA-IB-7651-01 1 1255909 1255909 G A CPSF3L Nonsense_Mutation p.R49* 0.22 TCGA-IB-7651-01 1 12638749 12638749 A C DHRS3 Missense_Mutation p.V232G 0.08 deleterious(0) benign(0.153) TCGA-IB-7651-01 1 1269749 1269749 G T TAS1R3 Missense_Mutation p.G822W 0.14 deleterious(0) benign(0.445) TCGA-IB-7651-01 1 1271741 1271741 C A DVL1 Missense_Mutation p.Q598H 0.18 tolerated(0.18) unknown(0) TCGA-IB-7651-01 1 1271751 1271751 G A DVL1 Missense_Mutation p.P595L 0.17 deleterious(0.02) unknown(0) TCGA-IB-7651-01 1 12726629 12726629 G A AADACL4 Nonsense_Mutation p.W369* 0.10 TCGA-IB-7651-01 1 12726682 12726682 C T AADACL4 Missense_Mutation p.A387V 0.10 tolerated(0.5) benign(0.002) TCGA-IB-7651-01 1 1275450 1275450 C T DVL1 Missense_Mutation p.G293S 0.10 deleterious(0) benign(0.372) TCGA-IB-7651-01 1 12780892 12780892 C A AADACL3 Missense_Mutation p.H74Q 0.18 deleterious(0) benign(0.159) TCGA-IB-7651-01 1 12819304 12819304 G A C1orf158 Missense_Mutation p.S96N 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 1 12835753 12835753 G T PRAMEF12 Missense_Mutation p.A119S 0.20 tolerated(0.56) benign(0.06) TCGA-IB-7651-01 1 12836043 12836043 G A PRAMEF12 Silent p.E215E 0.09 TCGA-IB-7651-01 1 12837595 12837595 G A PRAMEF12 Silent p.E435E 0.09 TCGA-IB-7651-01 1 12837727 12837727 G T PRAMEF12 Missense_Mutation p.Q479H 0.05 deleterious_low_confidence(0) benign(0.387) TCGA-IB-7651-01 1 12854104 12854104 G A PRAMEF1 Missense_Mutation p.E110K 0.06 deleterious(0.05) possibly_damaging(0.883) TCGA-IB-7651-01 1 12854270 12854270 G T PRAMEF1 Missense_Mutation p.R165I 0.08 tolerated(0.14) benign(0.178) TCGA-IB-7651-01 1 12884806 12884806 G A PRAMEF11 Silent p.C435C 0.11 TCGA-IB-7651-01 1 12884845 12884845 G A PRAMEF11 Silent p.G422G 0.19 TCGA-IB-7651-01 1 12888609 12888609 G T PRAMEF11 5'UTR 0.06 TCGA-IB-7651-01 1 12907993 12907993 C A HNRNPCL1 Missense_Mutation p.K50N 0.10 deleterious(0) benign(0.061) TCGA-IB-7651-01 1 13742940 13742940 C A PRAMEF20 Silent p.A43A 0.35 TCGA-IB-7651-01 1 1389854 1389854 C A ATAD3C Missense_Mutation p.L118I 0.11 tolerated(0.12) benign(0.033) TCGA-IB-7651-01 1 13940894 13940894 C T PDPN Missense_Mutation p.S233L 0.18 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 1 14075893 14075893 A C PRDM2 Missense_Mutation p.N141T 0.16 benign(0.143) TCGA-IB-7651-01 1 14105221 14105221 C T PRDM2 Missense_Mutation p.R311W 0.21 probably_damaging(0.948) TCGA-IB-7651-01 1 14105607 14105607 C T PRDM2 Silent p.N439N 0.24 TCGA-IB-7651-01 1 14109100 14109100 T G PRDM2 Missense_Mutation p.S1604A 0.11 unknown(0) TCGA-IB-7651-01 1 14113094 14113094 C T PRDM2 Intron 0.28 TCGA-IB-7651-01 1 14113194 14113194 C A PRDM2 Intron 0.17 TCGA-IB-7651-01 1 142713090 142713090 G T RP11-417J8.6 RNA 0.09 TCGA-IB-7651-01 1 142713918 142713918 A T RP11-417J8.6 RNA 0.10 TCGA-IB-7651-01 1 142803620 142803620 C A RP11-423O2.5 RNA 0.09 TCGA-IB-7651-01 1 144828718 144828719 - T NBPF9 Frame_Shift_Ins p.T665Yfs*25 0.08 TCGA-IB-7651-01 1 144852310 144852310 C A PDE4DIP 3'UTR 0.16 TCGA-IB-7651-01 1 144855838 144855838 C G PDE4DIP Missense_Mutation p.A2239P 0.16 deleterious(0.01) possibly_damaging(0.625) TCGA-IB-7651-01 1 144857634 144857634 C T PDE4DIP Silent p.T2140T 0.08 TCGA-IB-7651-01 1 144863415 144863415 C T PDE4DIP Silent p.Q1996Q 0.08 TCGA-IB-7651-01 1 144864303 144864303 C A PDE4DIP Missense_Mutation p.S1931I 0.09 tolerated(0.1) benign(0.361) TCGA-IB-7651-01 1 144879119 144879119 C A PDE4DIP Missense_Mutation p.R1444I 0.04 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 144882762 144882762 G A PDE4DIP Missense_Mutation p.T1086I 0.04 deleterious(0.01) benign(0.266) TCGA-IB-7651-01 1 144892214 144892214 C A PDE4DIP Intron 0.12 TCGA-IB-7651-01 1 144917575 144917575 C T PDE4DIP Missense_Mutation p.R510H 0.05 tolerated(0.91) benign(0.002) TCGA-IB-7651-01 1 144930582 144930582 A G PDE4DIP Intron 0.07 TCGA-IB-7651-01 1 144946641 144946641 G A PDE4DIP Missense_Mutation p.T207I 0.10 tolerated(0.21) benign(0.062) TCGA-IB-7651-01 1 144946699 144946699 G T PDE4DIP Missense_Mutation p.L188I 0.13 deleterious(0.04) benign(0.106) TCGA-IB-7651-01 1 144994627 144994627 C T PDE4DIP Silent p.Q35Q 0.05 TCGA-IB-7651-01 1 145273391 145273391 G A NOTCH2NL Missense_Mutation p.C82Y 0.04 deleterious(0) probably_damaging(0.975) TCGA-IB-7651-01 1 145281532 145281532 G T NOTCH2NL Missense_Mutation p.Q154H 0.05 tolerated(0.05) possibly_damaging(0.878) TCGA-IB-7651-01 1 145282044 145282044 A G NOTCH2NL 3'UTR 0.05 TCGA-IB-7651-01 1 145415658 145415658 T C HFE2 Silent p.G159G 0.25 TCGA-IB-7651-01 1 145416857 145416857 C T HFE2 Missense_Mutation p.A401V 0.18 tolerated(0.08) benign(0.271) TCGA-IB-7651-01 1 145474082 145474082 C A ANKRD34A Missense_Mutation p.L252I 0.14 deleterious(0.02) probably_damaging(0.952) TCGA-IB-7651-01 1 145508545 145508545 A C RBM8A Missense_Mutation p.K92N 0.28 deleterious(0.05) possibly_damaging(0.776) TCGA-IB-7651-01 1 145536894 145536894 C T ITGA10 Silent p.T758T 0.25 TCGA-IB-7651-01 1 145561096 145561096 G A ANKRD35 Missense_Mutation p.A262T 0.23 tolerated(0.12) possibly_damaging(0.811) TCGA-IB-7651-01 1 145584278 145584278 G A PIAS3 Missense_Mutation p.A477T 0.22 tolerated(0.58) benign(0.071) TCGA-IB-7651-01 1 145587350 145587350 G A NUDT17 Missense_Mutation p.L244F 0.27 tolerated(0.67) benign(0.223) TCGA-IB-7651-01 1 1455928 1455928 G A ATAD3A Silent p.R275R 0.24 TCGA-IB-7651-01 1 145663313 145663313 G A RNF115 Missense_Mutation p.R125Q 0.08 tolerated(0.14) benign(0.015) TCGA-IB-7651-01 1 145704275 145704275 G A CD160 Missense_Mutation p.H48Y 0.07 tolerated(0.24) benign(0.006) TCGA-IB-7651-01 1 145748564 145748564 G A PDZK1 Missense_Mutation p.G146D 0.19 deleterious(0.01) possibly_damaging(0.739) TCGA-IB-7651-01 1 1458924 1458924 G A ATAD3A Missense_Mutation p.A362T 0.16 deleterious(0.02) benign(0.356) TCGA-IB-7651-01 1 146631222 146631222 C A PRKAB2 Splice_Site p.X248_splice 0.16 TCGA-IB-7651-01 1 146643671 146643671 G A PRKAB2 Missense_Mutation p.A18V 0.24 tolerated(0.19) benign(0.006) TCGA-IB-7651-01 1 146672826 146672826 G A FMO5 Missense_Mutation p.P364L 0.11 deleterious(0.01) probably_damaging(0.976) TCGA-IB-7651-01 1 146731508 146731508 T G CHD1L Missense_Mutation p.L171R 0.15 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 1 147092306 147092306 G T BCL9 Missense_Mutation p.R782I 0.12 tolerated(0.38) probably_damaging(0.974) TCGA-IB-7651-01 1 147230480 147230480 G T GJA5 Silent p.S289S 0.21 TCGA-IB-7651-01 1 147380546 147380546 T C GJA8 Missense_Mutation p.I155T 0.18 deleterious(0) possibly_damaging(0.77) TCGA-IB-7651-01 1 147380849 147380849 C T GJA8 Missense_Mutation p.A256V 0.18 tolerated(0.13) benign(0.33) TCGA-IB-7651-01 1 147381090 147381090 G A GJA8 Silent p.P336P 0.22 TCGA-IB-7651-01 1 147381177 147381177 C T GJA8 Silent p.A365A 0.12 TCGA-IB-7651-01 1 147580781 147580781 G A NBPF24 Missense_Mutation p.A671V 0.16 deleterious(0.03) possibly_damaging(0.702) TCGA-IB-7651-01 1 148251966 148251966 C A NBPF20 Missense_Mutation p.S4592I 0.14 benign(0.165) TCGA-IB-7651-01 1 148932898 148932898 C T RP11-14N7.2 RNA 0.04 TCGA-IB-7651-01 1 149759933 149759933 C A FCGR1A Missense_Mutation p.L107M 0.08 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 149858955 149858955 C T HIST2H2AC 3'UTR 0.29 TCGA-IB-7651-01 1 149871987 149871987 A G BOLA1 Silent p.P125P 0.23 TCGA-IB-7651-01 1 149877336 149877336 C A SV2A Intron 0.25 TCGA-IB-7651-01 1 149906095 149906095 G A MTMR11 Silent p.D224D 0.18 TCGA-IB-7651-01 1 149916165 149916165 C T OTUD7B Missense_Mutation p.C708Y 0.24 tolerated_low_confidence(1) benign(0.001) TCGA-IB-7651-01 1 149937711 149937711 C A OTUD7B Missense_Mutation p.A199S 0.16 deleterious(0) probably_damaging(0.985) TCGA-IB-7651-01 1 149939346 149939346 C A OTUD7B Missense_Mutation p.E125D 0.18 tolerated(0.21) probably_damaging(0.99) TCGA-IB-7651-01 1 149939428 149939428 C T OTUD7B Missense_Mutation p.G98D 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 150240131 150240131 G A APH1A Missense_Mutation p.R115C 0.15 deleterious(0) possibly_damaging(0.761) TCGA-IB-7651-01 1 150240145 150240145 G A APH1A Missense_Mutation p.S110L 0.14 tolerated(0.31) possibly_damaging(0.578) TCGA-IB-7651-01 1 150255695 150255695 C T C1orf51 Silent p.S6S 0.25 TCGA-IB-7651-01 1 150280738 150280738 T G MRPS21 3'UTR 0.18 TCGA-IB-7651-01 1 150298269 150298269 C T PRPF3 Missense_Mutation p.A69V 0.16 tolerated(0.53) benign(0.063) TCGA-IB-7651-01 1 150307598 150307598 C T PRPF3 Silent p.S307S 0.07 TCGA-IB-7651-01 1 150312898 150312898 A C PRPF3 Missense_Mutation p.E409D 0.15 tolerated(0.55) benign(0.008) TCGA-IB-7651-01 1 150479571 150479571 C T TARS2 3'UTR 0.27 TCGA-IB-7651-01 1 150483559 150483559 C A ECM1 Missense_Mutation p.S225Y 0.06 deleterious(0) possibly_damaging(0.891) TCGA-IB-7651-01 1 150485713 150485713 A C ECM1 Missense_Mutation p.K492Q 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 1 150525688 150525688 C T ADAMTSL4 Silent p.H131H 0.15 TCGA-IB-7651-01 1 150525719 150525719 G T ADAMTSL4 Missense_Mutation p.A142S 0.05 tolerated(0.4) benign(0.021) TCGA-IB-7651-01 1 150525729 150525729 G T ADAMTSL4 Missense_Mutation p.R145M 0.12 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 150532711 150532711 A G ADAMTSL4 3'UTR 0.25 TCGA-IB-7651-01 1 150551721 150551721 G A MCL1 Silent p.L96L 0.23 TCGA-IB-7651-01 1 150620874 150620874 C T GOLPH3L Missense_Mutation p.D261N 0.24 tolerated(0.11) benign(0.121) TCGA-IB-7651-01 1 150720331 150720331 G A CTSS Missense_Mutation p.T273I 0.17 deleterious(0.02) probably_damaging(0.985) TCGA-IB-7651-01 1 150724344 150724344 G A CTSS Silent p.C180C 0.16 TCGA-IB-7651-01 1 150915038 150915038 G T SETDB1 Splice_Site p.X183_splice 0.07 TCGA-IB-7651-01 1 150938477 150938477 C A CERS2 3'UTR 0.23 TCGA-IB-7651-01 1 150940918 150940918 C T CERS2 Missense_Mutation p.A82T 0.20 tolerated(0.13) benign(0.002) TCGA-IB-7651-01 1 151021076 151021076 A G C1orf56 Silent p.Q251Q 0.26 TCGA-IB-7651-01 1 151105814 151105814 G A SEMA6C Missense_Mutation p.R679C 0.24 deleterious(0.03) possibly_damaging(0.835) TCGA-IB-7651-01 1 151115025 151115025 C T SEMA6C Missense_Mutation p.A25T 0.18 tolerated(0.11) benign(0.001) TCGA-IB-7651-01 1 151171281 151171281 C A PIP5K1A 5'UTR 0.28 TCGA-IB-7651-01 1 151259046 151259046 G T ZNF687 Missense_Mutation p.E93D 0.15 tolerated(0.12) possibly_damaging(0.838) TCGA-IB-7651-01 1 151262958 151262958 A C ZNF687 Missense_Mutation p.K1043T 0.12 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 1 151263273 151263273 G A ZNF687 Missense_Mutation p.R1101K 0.17 tolerated(0.31) benign(0.047) TCGA-IB-7651-01 1 151316355 151316355 C A RFX5 Nonsense_Mutation p.E187* 0.25 TCGA-IB-7651-01 1 151377699 151377699 G A POGZ Missense_Mutation p.T1271I 0.17 tolerated(0.07) probably_damaging(0.999) TCGA-IB-7651-01 1 151493070 151493070 A G CGN Splice_Site p.X349_splice 0.25 TCGA-IB-7651-01 1 151497153 151497153 C T CGN Silent p.L469L 0.19 TCGA-IB-7651-01 1 151666222 151666222 C T SNX27 3'UTR 0.26 TCGA-IB-7651-01 1 151751711 151751711 G A TDRKH Silent p.G143G 0.16 TCGA-IB-7651-01 1 151773422 151773422 G A LINGO4 Missense_Mutation p.R587W 0.26 deleterious(0) possibly_damaging(0.898) TCGA-IB-7651-01 1 151773618 151773618 G A LINGO4 Silent p.I521I 0.18 TCGA-IB-7651-01 1 151775046 151775046 G T LINGO4 Silent p.L45L 0.09 TCGA-IB-7651-01 1 151775194 151775194 C A LINGO4 Splice_Site 0.29 TCGA-IB-7651-01 1 151785743 151785743 G A RORC Silent p.Y382Y 0.04 TCGA-IB-7651-01 1 151787891 151787891 G A RORC Silent p.F103F 0.15 TCGA-IB-7651-01 1 152005293 152005293 T C S100A11 Missense_Mutation p.K55E 0.10 deleterious(0.02) benign(0.313) TCGA-IB-7651-01 1 152058970 152058970 A T TCHHL1 Silent p.G396G 0.18 TCGA-IB-7651-01 1 152060019 152060019 G T TCHHL1 Missense_Mutation p.P47T 0.15 deleterious(0.01) probably_damaging(0.976) TCGA-IB-7651-01 1 152080181 152080181 G A TCHH Missense_Mutation p.R1838W 0.18 possibly_damaging(0.689) TCGA-IB-7651-01 1 152082432 152082432 C T TCHH Silent p.Q1087Q 0.13 TCGA-IB-7651-01 1 152084576 152084576 G A TCHH Missense_Mutation p.R373C 0.13 unknown(0) TCGA-IB-7651-01 1 152085355 152085355 C T TCHH Missense_Mutation p.R113H 0.23 unknown(0) TCGA-IB-7651-01 1 152127264 152127264 G A RPTN Nonsense_Mutation p.R771* 0.16 TCGA-IB-7651-01 1 152128294 152128294 G A RPTN Silent p.Y427Y 0.27 TCGA-IB-7651-01 1 152128896 152128896 C T RPTN Missense_Mutation p.A227T 0.24 deleterious(0.01) possibly_damaging(0.691) TCGA-IB-7651-01 1 152192138 152192138 G T HRNR Missense_Mutation p.S656Y 0.14 unknown(0) TCGA-IB-7651-01 1 152192207 152192207 G A HRNR Missense_Mutation p.S633F 0.15 unknown(0) TCGA-IB-7651-01 1 152192830 152192830 G A HRNR Silent p.G425G 0.27 TCGA-IB-7651-01 1 152276040 152276040 G A FLG Silent p.H3774H 0.08 TCGA-IB-7651-01 1 152277244 152277244 C T FLG Missense_Mutation p.R3373H 0.24 unknown(0) TCGA-IB-7651-01 1 152279011 152279011 T C FLG Missense_Mutation p.D2784G 0.11 benign(0.003) TCGA-IB-7651-01 1 152281915 152281915 T C FLG Missense_Mutation p.H1816R 0.24 benign(0.227) TCGA-IB-7651-01 1 152281939 152281939 T C FLG Missense_Mutation p.E1808G 0.17 benign(0.403) TCGA-IB-7651-01 1 152283914 152283914 G A FLG Nonsense_Mutation p.R1150* 0.04 TCGA-IB-7651-01 1 152285813 152285813 G A FLG Missense_Mutation p.R517C 0.25 benign(0.111) TCGA-IB-7651-01 1 152323365 152323365 T C FLG2 Silent p.G2299G 0.17 TCGA-IB-7651-01 1 152323561 152323561 T C FLG2 Missense_Mutation p.H2234R 0.17 benign(0.403) TCGA-IB-7651-01 1 152325221 152325221 G A FLG2 Missense_Mutation p.H1681Y 0.17 benign(0.168) TCGA-IB-7651-01 1 152327349 152327349 G A FLG2 Silent p.S971S 0.17 TCGA-IB-7651-01 1 152329582 152329582 G T FLG2 Missense_Mutation p.S227Y 0.09 unknown(0) TCGA-IB-7651-01 1 152382446 152382446 G T CRNN Missense_Mutation p.A371D 0.18 tolerated(0.44) benign(0.008) TCGA-IB-7651-01 1 152383288 152383288 G A CRNN Silent p.S90S 0.12 TCGA-IB-7651-01 1 152551945 152551945 T C LCE3D 3'UTR 0.23 TCGA-IB-7651-01 1 152595443 152595443 C T LCE3A Missense_Mutation p.S46N 0.07 tolerated_low_confidence(0.06) unknown(0) TCGA-IB-7651-01 1 152732646 152732646 G A KPRP Silent p.Q194Q 0.26 TCGA-IB-7651-01 1 152749094 152749094 C A LCE1F Missense_Mutation p.R83S 0.28 tolerated_low_confidence(0.66) unknown(0) TCGA-IB-7651-01 1 152770357 152770357 T C LCE1D Silent p.C29C 0.30 TCGA-IB-7651-01 1 152770417 152770417 C A LCE1D Silent p.G49G 0.32 TCGA-IB-7651-01 1 152777455 152777455 A G LCE1C 3'UTR 0.19 TCGA-IB-7651-01 1 152777708 152777708 G A LCE1C Missense_Mutation p.R83C 0.16 deleterious_low_confidence(0.05) unknown(0) TCGA-IB-7651-01 1 152777882 152777882 G A LCE1C Missense_Mutation p.P25S 0.26 tolerated_low_confidence(0.32) unknown(0) TCGA-IB-7651-01 1 152883822 152883822 G C IVL Missense_Mutation p.D517H 0.26 deleterious(0.01) benign(0.055) TCGA-IB-7651-01 1 153029119 153029119 C A SPRR2A Missense_Mutation p.K31N 0.22 deleterious_low_confidence(0.03) unknown(0) TCGA-IB-7651-01 1 153043235 153043235 A G SPRR2B Silent p.C27C 0.12 TCGA-IB-7651-01 1 153122548 153122548 C A SPRR2G Missense_Mutation p.Q13H 0.13 unknown(0) TCGA-IB-7651-01 1 153279722 153279722 C T PGLYRP3 Missense_Mutation p.R26H 0.08 tolerated(0.08) benign(0.075) TCGA-IB-7651-01 1 153312923 153312923 C T PGLYRP4 Missense_Mutation p.R253H 0.22 tolerated(0.52) benign(0.113) TCGA-IB-7651-01 1 153314114 153314114 C A PGLYRP4 Missense_Mutation p.S205I 0.14 tolerated(0.19) benign(0.006) TCGA-IB-7651-01 1 153580639 153580639 G A S100A16 5'UTR 0.10 TCGA-IB-7651-01 1 153598820 153598820 G A S100A13 Silent p.T43T 0.17 TCGA-IB-7651-01 1 153642341 153642341 C T ILF2 Missense_Mutation p.V27I 0.15 tolerated(0.26) benign(0.085) TCGA-IB-7651-01 1 153657450 153657450 C A NPR1 Missense_Mutation p.L499M 0.29 deleterious(0.02) probably_damaging(0.996) TCGA-IB-7651-01 1 153730091 153730091 G A INTS3 Missense_Mutation p.R334H 0.08 deleterious(0.01) possibly_damaging(0.882) TCGA-IB-7651-01 1 153744853 153744853 C T INTS3 Silent p.L920L 0.26 TCGA-IB-7651-01 1 153791334 153791334 T G GATAD2B Missense_Mutation p.E177A 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 1 153800602 153800602 G A GATAD2B Silent p.G74G 0.18 TCGA-IB-7651-01 1 153903473 153903473 G A DENND4B Missense_Mutation p.T1355I 0.30 deleterious(0.03) benign(0.003) TCGA-IB-7651-01 1 153903495 153903495 G A DENND4B Missense_Mutation p.R1348W 0.14 deleterious(0) possibly_damaging(0.857) TCGA-IB-7651-01 1 153903514 153903514 A G DENND4B Silent p.D1341D 0.11 TCGA-IB-7651-01 1 153905988 153905988 G A DENND4B Missense_Mutation p.R1101W 0.24 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 1 153907339 153907339 G T DENND4B Silent p.P890P 0.15 TCGA-IB-7651-01 1 153909116 153909116 C T DENND4B Missense_Mutation p.A781T 0.32 tolerated(0.31) benign(0.027) TCGA-IB-7651-01 1 153945234 153945234 C T CREB3L4 Silent p.T186T 0.20 TCGA-IB-7651-01 1 153947167 153947167 G A JTB Silent p.I143I 0.08 TCGA-IB-7651-01 1 153955319 153955319 C T RAB13 Intron 0.30 TCGA-IB-7651-01 1 153956050 153956050 C T RAB13 Missense_Mutation p.A65T 0.19 deleterious(0) possibly_damaging(0.754) TCGA-IB-7651-01 1 153991470 153991470 C A NUP210L Missense_Mutation p.R1531M 0.17 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 1 153998021 153998021 G A NUP210L Silent p.V1373V 0.15 TCGA-IB-7651-01 1 154026854 154026854 T G NUP210L Missense_Mutation p.Q1111H 0.25 deleterious(0.03) possibly_damaging(0.819) TCGA-IB-7651-01 1 154184951 154184951 C T C1orf43 Missense_Mutation p.A164T 0.29 deleterious(0) possibly_damaging(0.835) TCGA-IB-7651-01 1 154185064 154185064 G A C1orf43 Missense_Mutation p.S126F 0.08 tolerated(0.06) benign(0.139) TCGA-IB-7651-01 1 15420728 15420728 C T KAZN Silent p.G425G 0.19 TCGA-IB-7651-01 1 154232488 154232488 C T UBAP2L Missense_Mutation p.A854V 0.13 deleterious(0) possibly_damaging(0.543) TCGA-IB-7651-01 1 154248251 154248251 C T HAX1 3'UTR 0.09 TCGA-IB-7651-01 1 154300337 154300337 G T ATP8B2 Missense_Mutation p.R21M 0.04 tolerated_low_confidence(0.08) benign(0.044) TCGA-IB-7651-01 1 154437670 154437670 G A IL6R Silent p.P407P 0.18 TCGA-IB-7651-01 1 154437964 154437964 C T IL6R 3'UTR 0.23 TCGA-IB-7651-01 1 154520068 154520068 A G TDRD10 3'UTR 0.26 TCGA-IB-7651-01 1 154557177 154557177 A G ADAR 3'UTR 0.30 TCGA-IB-7651-01 1 154557275 154557275 G T ADAR 3'UTR 0.16 TCGA-IB-7651-01 1 154569664 154569664 C T ADAR Missense_Mutation p.A672T 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 154574527 154574527 G A ADAR Silent p.I197I 0.24 TCGA-IB-7651-01 1 154575024 154575024 G A ADAR Missense_Mutation p.P32S 0.21 tolerated_low_confidence(0.55) benign(0.004) TCGA-IB-7651-01 1 154744644 154744644 C T KCNN3 Missense_Mutation p.A419T 0.22 deleterious(0.03) probably_damaging(0.996) TCGA-IB-7651-01 1 154897455 154897455 C T PMVK 3'UTR 0.32 TCGA-IB-7651-01 1 154932183 154932183 G T PYGO2 Missense_Mutation p.P98H 0.19 tolerated(0.11) probably_damaging(0.985) TCGA-IB-7651-01 1 154932251 154932251 G A PYGO2 Silent p.S75S 0.27 TCGA-IB-7651-01 1 154988148 154988148 C T ZBTB7B Missense_Mutation p.R372C 0.28 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 1 154999185 154999185 A G DCST2 Missense_Mutation p.V450A 0.13 tolerated(0.11) possibly_damaging(0.863) TCGA-IB-7651-01 1 155020587 155020587 G A DCST1 Missense_Mutation p.A604T 0.27 tolerated(0.15) benign(0.061) TCGA-IB-7651-01 1 155104109 155104109 C A EFNA1 Silent p.I129I 0.26 TCGA-IB-7651-01 1 155110570 155110570 T G SLC50A1 Missense_Mutation p.I187S 0.05 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 1 155112460 155112460 G A DPM3 Missense_Mutation p.A116V 0.20 tolerated(0.2) benign(0.376) TCGA-IB-7651-01 1 155148076 155148076 G A TRIM46 Missense_Mutation p.R93H 0.15 tolerated(0.06) benign(0.346) TCGA-IB-7651-01 1 155154489 155154489 G A TRIM46 Missense_Mutation p.D584N 0.06 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 1 155160512 155160512 A T MUC1 Missense_Mutation p.F306I 0.25 deleterious(0) probably_damaging(0.914) TCGA-IB-7651-01 1 155204827 155204827 G A GBA Missense_Mutation p.P524S 0.11 deleterious(0.04) probably_damaging(0.961) TCGA-IB-7651-01 1 155232998 155232998 G T CLK2 3'UTR 0.11 TCGA-IB-7651-01 1 155234050 155234050 G A CLK2 Silent p.I395I 0.16 TCGA-IB-7651-01 1 155236524 155236524 G A CLK2 Silent p.V277V 0.25 TCGA-IB-7651-01 1 155264395 155264395 G A PKLR Silent p.D281D 0.08 TCGA-IB-7651-01 1 155265358 155265358 T C PKLR Missense_Mutation p.Y126C 0.09 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 1 155288142 155288142 G T FDPS Intron 0.20 TCGA-IB-7651-01 1 155289473 155289473 G A FDPS Silent p.Q306Q 0.18 TCGA-IB-7651-01 1 155297964 155297964 C T RUSC1 Missense_Mutation p.P813L 0.26 tolerated(0.15) possibly_damaging(0.65) TCGA-IB-7651-01 1 155300316 155300316 G T RUSC1 Missense_Mutation p.G888V 0.14 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 155313152 155313152 G T ASH1L Missense_Mutation p.A2749D 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IB-7651-01 1 155348095 155348095 G A ASH1L Silent p.G2103G 0.23 TCGA-IB-7651-01 1 155408590 155408590 A C ASH1L Missense_Mutation p.L1786V 0.18 tolerated_low_confidence(0.1) benign(0.1) TCGA-IB-7651-01 1 15541513 15541513 T G TMEM51 5'UTR 0.12 TCGA-IB-7651-01 1 15541680 15541680 C A TMEM51 Missense_Mutation p.L33M 0.09 tolerated(0.11) probably_damaging(0.985) TCGA-IB-7651-01 1 155451439 155451439 G A ASH1L Silent p.L408L 0.29 TCGA-IB-7651-01 1 155491144 155491144 C T ASH1L Missense_Mutation p.R56K 0.17 tolerated_low_confidence(1) benign(0.012) TCGA-IB-7651-01 1 155581034 155581034 G A MSTO1 Silent p.E106E 0.12 TCGA-IB-7651-01 1 155581999 155581999 C T MSTO1 Silent p.H235H 0.16 TCGA-IB-7651-01 1 155582030 155582030 G A MSTO1 Missense_Mutation p.A246T 0.25 tolerated(1) benign(0.006) TCGA-IB-7651-01 1 155582081 155582081 C T MSTO1 Silent p.L263L 0.17 TCGA-IB-7651-01 1 155583948 155583948 C T MSTO1 Missense_Mutation p.R533W 0.11 deleterious(0.01) benign(0.018) TCGA-IB-7651-01 1 155629239 155629239 A G YY1AP1 3'Flank 0.34 TCGA-IB-7651-01 1 155629498 155629498 C T YY1AP1 Missense_Mutation p.V873I 0.14 deleterious_low_confidence(0.04) benign(0.329) TCGA-IB-7651-01 1 155630344 155630344 G A YY1AP1 Missense_Mutation p.P591S 0.18 tolerated_low_confidence(0.06) benign(0.098) TCGA-IB-7651-01 1 155646536 155646536 A C YY1AP1 Missense_Mutation p.F181V 0.12 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 155719622 155719622 G T GON4L 3'UTR 0.21 TCGA-IB-7651-01 1 155732150 155732150 G A GON4L Missense_Mutation p.A1581V 0.25 tolerated(0.14) possibly_damaging(0.866) TCGA-IB-7651-01 1 155733187 155733187 C A GON4L Missense_Mutation p.A1548S 0.18 tolerated(0.05) possibly_damaging(0.866) TCGA-IB-7651-01 1 155746214 155746214 G A GON4L Missense_Mutation p.P717L 0.22 deleterious(0.05) benign(0.018) TCGA-IB-7651-01 1 155783530 155783530 C T GON4L Silent p.P449P 0.25 TCGA-IB-7651-01 1 155850386 155850386 G A SYT11 Silent p.P319P 0.04 TCGA-IB-7651-01 1 155851195 155851195 C T SYT11 Silent p.L398L 0.04 TCGA-IB-7651-01 1 155851245 155851245 C A SYT11 Silent p.V414V 0.26 TCGA-IB-7651-01 1 155885577 155885577 C T KIAA0907 Intron 0.26 TCGA-IB-7651-01 1 155885736 155885736 C A KIAA0907 Missense_Mutation p.A525S 0.25 tolerated(0.29) benign(0.007) TCGA-IB-7651-01 1 155891297 155891297 C A KIAA0907 Nonsense_Mutation p.G379* 0.15 TCGA-IB-7651-01 1 155899568 155899568 C A KIAA0907 Missense_Mutation p.V107L 0.19 deleterious(0.01) possibly_damaging(0.786) TCGA-IB-7651-01 1 156046584 156046584 C T MEX3A Silent p.P448P 0.27 TCGA-IB-7651-01 1 156047062 156047062 G A MEX3A Missense_Mutation p.A289V 0.16 deleterious(0) possibly_damaging(0.551) TCGA-IB-7651-01 1 156047459 156047459 C T MEX3A Missense_Mutation p.A157T 0.24 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 1 156047474 156047474 C A MEX3A Splice_Site p.X152_splice 0.10 TCGA-IB-7651-01 1 156096406 156096406 G T LMNA Intron 0.25 TCGA-IB-7651-01 1 156130351 156130351 G A SEMA4A Splice_Site p.X229_splice 0.18 TCGA-IB-7651-01 1 156169976 156169976 T G SLC25A44 Missense_Mutation p.L113R 0.24 deleterious(0) probably_damaging(0.975) TCGA-IB-7651-01 1 156203496 156203496 C T PMF1 Silent p.G115G 0.27 TCGA-IB-7651-01 1 156209359 156209359 G T PMF1 Intron 0.21 TCGA-IB-7651-01 1 156221200 156221200 T C SMG5 Missense_Mutation p.D941G 0.18 deleterious(0) probably_damaging(0.962) TCGA-IB-7651-01 1 156238182 156238182 C A SMG5 Missense_Mutation p.E246D 0.19 tolerated(0.6) benign(0.242) TCGA-IB-7651-01 1 156247016 156247016 C A SMG5 Missense_Mutation p.S105I 0.15 deleterious(0.01) probably_damaging(0.968) TCGA-IB-7651-01 1 156268478 156268478 G A VHLL 3'UTR 0.26 TCGA-IB-7651-01 1 156268967 156268967 G A VHLL Missense_Mutation p.A5V 0.27 deleterious_low_confidence(0) benign(0.001) TCGA-IB-7651-01 1 156279038 156279038 G A CCT3 Silent p.G530G 0.18 TCGA-IB-7651-01 1 156288797 156288797 G A CCT3 Silent p.G207G 0.09 TCGA-IB-7651-01 1 156347099 156347099 G T RHBG Missense_Mutation p.Q65H 0.22 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 156499988 156499988 C T IQGAP3 Missense_Mutation p.R1438Q 0.22 deleterious(0.04) benign(0.133) TCGA-IB-7651-01 1 156504303 156504303 G A IQGAP3 Missense_Mutation p.L1244F 0.21 tolerated(0.24) benign(0.002) TCGA-IB-7651-01 1 156552183 156552183 T G TTC24 Nonsense_Mutation p.Y289* 0.22 TCGA-IB-7651-01 1 156563698 156563698 C T APOA1BP Missense_Mutation p.A230V 0.22 tolerated(0.29) benign(0.148) TCGA-IB-7651-01 1 156617305 156617305 G A BCAN Missense_Mutation p.V158I 0.17 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 1 156618630 156618630 G A BCAN Missense_Mutation p.R347H 0.26 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 1 156639369 156639369 G T NES Silent p.G1537G 0.08 TCGA-IB-7651-01 1 156639791 156639791 G A NES Silent p.L1397L 0.23 TCGA-IB-7651-01 1 156640644 156640644 G A NES Silent p.G1112G 0.14 TCGA-IB-7651-01 1 156641102 156641102 C A NES Nonsense_Mutation p.E960* 0.08 TCGA-IB-7651-01 1 156641406 156641406 C T NES Silent p.G858G 0.10 TCGA-IB-7651-01 1 156641882 156641882 G T NES Missense_Mutation p.L700M 0.27 deleterious(0.01) possibly_damaging(0.868) TCGA-IB-7651-01 1 156670843 156670843 C T CRABP2 Silent p.G24G 0.08 TCGA-IB-7651-01 1 156694029 156694029 G T ISG20L2 Missense_Mutation p.P287T 0.09 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 156714810 156714810 G T HDGF Missense_Mutation p.S114Y 0.22 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 1 156813243 156813243 G T INSRR Missense_Mutation p.P958T 0.16 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 1 156819222 156819222 C T INSRR Silent p.Q420Q 0.04 TCGA-IB-7651-01 1 156849945 156849945 C T NTRK1 Missense_Mutation p.T734M 0.15 deleterious(0) possibly_damaging(0.9) TCGA-IB-7651-01 1 156876547 156876547 C T PEAR1 Silent p.N173N 0.24 TCGA-IB-7651-01 1 156897380 156897380 G A LRRC71 Missense_Mutation p.R252Q 0.13 tolerated(0.1) possibly_damaging(0.722) TCGA-IB-7651-01 1 156913859 156913859 G T ARHGEF11 Missense_Mutation p.L1035M 0.15 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 1 156928923 156928923 G A ARHGEF11 Missense_Mutation p.R432W 0.22 deleterious(0.01) probably_damaging(0.988) TCGA-IB-7651-01 1 156933060 156933060 A C ARHGEF11 Missense_Mutation p.S359A 0.07 tolerated(0.16) benign(0.002) TCGA-IB-7651-01 1 157069139 157069139 G A ETV3L Silent p.A30A 0.36 TCGA-IB-7651-01 1 157490923 157490923 G A FCRL5 Missense_Mutation p.S800F 0.16 deleterious(0.02) possibly_damaging(0.6) TCGA-IB-7651-01 1 157494130 157494130 G T FCRL5 Silent p.S726S 0.29 TCGA-IB-7651-01 1 157497598 157497598 G A FCRL5 Missense_Mutation p.P590L 0.19 tolerated(0.5) benign(0.001) TCGA-IB-7651-01 1 157504525 157504525 G T FCRL5 Silent p.P520P 0.16 TCGA-IB-7651-01 1 157514222 157514222 C T FCRL5 Missense_Mutation p.R225Q 0.17 tolerated(1) benign(0.002) TCGA-IB-7651-01 1 157551412 157551412 G A FCRL4 Silent p.G386G 0.29 TCGA-IB-7651-01 1 15755181 15755181 G A EFHD2 Silent p.R228R 0.11 TCGA-IB-7651-01 1 157660291 157660291 C T FCRL3 Missense_Mutation p.A482T 0.23 tolerated(0.39) benign(0.11) TCGA-IB-7651-01 1 157667073 157667073 G A FCRL3 Missense_Mutation p.T234I 0.23 tolerated(0.71) benign(0.06) TCGA-IB-7651-01 1 157771268 157771268 C T FCRL1 Missense_Mutation p.G329D 0.16 deleterious(0.03) possibly_damaging(0.65) TCGA-IB-7651-01 1 157804531 157804531 C T CD5L Silent p.E128E 0.26 TCGA-IB-7651-01 1 1580536 1580536 G A CDK11B Silent p.R197R 0.11 TCGA-IB-7651-01 1 158064849 158064849 A G KIRREL Missense_Mutation p.Y738C 0.25 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 158225026 158225026 T C CD1A Missense_Mutation p.S71P 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-IB-7651-01 1 158261152 158261152 G A CD1C Missense_Mutation p.R97Q 0.26 tolerated(0.67) benign(0.001) TCGA-IB-7651-01 1 158299257 158299257 G A CD1B Silent p.L263L 0.17 TCGA-IB-7651-01 1 158299849 158299849 C A CD1B Nonsense_Mutation p.G134* 0.26 TCGA-IB-7651-01 1 158301164 158301164 T C CD1B Missense_Mutation p.N17S 0.29 tolerated(0.1) benign(0.001) TCGA-IB-7651-01 1 158325793 158325793 T C CD1E Missense_Mutation p.Y268H 0.06 deleterious(0.03) possibly_damaging(0.804) TCGA-IB-7651-01 1 158326737 158326737 C T CD1E 3'UTR 0.17 TCGA-IB-7651-01 1 158368954 158368954 C T OR10T2 Silent p.Q101Q 0.08 TCGA-IB-7651-01 1 158450047 158450047 T C OR10R2 Missense_Mutation p.F127S 0.25 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 1 158517417 158517417 G A OR6Y1 Missense_Mutation p.T160I 0.15 tolerated(1) probably_damaging(0.967) TCGA-IB-7651-01 1 158517519 158517519 T C OR6Y1 Missense_Mutation p.D126G 0.25 deleterious(0.01) probably_damaging(0.987) TCGA-IB-7651-01 1 158517703 158517703 A G OR6Y1 Missense_Mutation p.Y65H 0.22 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 1 158548724 158548724 A G OR10X1 Silent p.V322V 0.17 TCGA-IB-7651-01 1 158617374 158617374 C T SPTA1 Missense_Mutation p.S1284N 0.12 tolerated(0.36) benign(0.004) TCGA-IB-7651-01 1 158626413 158626413 C T SPTA1 Missense_Mutation p.D947N 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 158627401 158627401 G A SPTA1 Nonsense_Mutation p.R891* 0.28 TCGA-IB-7651-01 1 158631185 158631185 C T SPTA1 Missense_Mutation p.A827T 0.14 tolerated(0.14) benign(0.038) TCGA-IB-7651-01 1 158631186 158631186 A G SPTA1 Silent p.I826I 0.14 TCGA-IB-7651-01 1 158636273 158636273 C A SPTA1 Nonsense_Mutation p.E685* 0.15 TCGA-IB-7651-01 1 158639514 158639514 C A SPTA1 Missense_Mutation p.K554N 0.25 deleterious(0.04) benign(0.116) TCGA-IB-7651-01 1 158641181 158641181 C T SPTA1 Silent p.K517K 0.27 TCGA-IB-7651-01 1 158650471 158650471 C T SPTA1 Missense_Mutation p.E194K 0.26 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 158653211 158653211 T C SPTA1 Missense_Mutation p.T114A 0.07 tolerated(0.29) benign(0.094) TCGA-IB-7651-01 1 158669633 158669633 G T OR6K2 Missense_Mutation p.F270L 0.25 tolerated(0.67) benign(0.029) TCGA-IB-7651-01 1 158669909 158669909 A G OR6K2 Silent p.C178C 0.26 TCGA-IB-7651-01 1 158725615 158725615 G T OR6K6 Missense_Mutation p.R337M 0.26 tolerated(0.15) benign(0.011) TCGA-IB-7651-01 1 158735907 158735907 C T OR6N1 Missense_Mutation p.C189Y 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 158813851 158813851 T G MNDA Missense_Mutation p.V170G 0.20 tolerated(0.46) benign(0.006) TCGA-IB-7651-01 1 158911953 158911953 A G PYHIN1 Missense_Mutation p.N256D 0.24 tolerated(0.08) benign(0.217) TCGA-IB-7651-01 1 158913768 158913768 G T PYHIN1 Missense_Mutation p.Q397H 0.28 deleterious(0.01) possibly_damaging(0.553) TCGA-IB-7651-01 1 158984471 158984471 A G IFI16 Translation_Start_Site p.M1? 0.25 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 1 158988314 158988314 C T IFI16 Missense_Mutation p.A282V 0.27 tolerated(0.74) benign(0.295) TCGA-IB-7651-01 1 159163241 159163241 T G CADM3 Silent p.G171G 0.09 TCGA-IB-7651-01 1 159163289 159163289 G A CADM3 Silent p.Q187Q 0.26 TCGA-IB-7651-01 1 159170620 159170620 G T CADM3 Missense_Mutation p.G403C 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 159170760 159170760 C A CADM3 3'UTR 0.17 TCGA-IB-7651-01 1 159273844 159273844 G A FCER1A Missense_Mutation p.G68D 0.17 tolerated(0.39) benign(0.016) TCGA-IB-7651-01 1 159277659 159277659 G A FCER1A Silent p.K237K 0.19 TCGA-IB-7651-01 1 159283537 159283537 G A OR10J3 Missense_Mutation p.R305C 0.20 tolerated(0.18) benign(0.015) TCGA-IB-7651-01 1 159283813 159283813 C T OR10J3 Missense_Mutation p.G213S 0.13 tolerated(0.41) benign(0.117) TCGA-IB-7651-01 1 159410122 159410122 C T OR10J1 Missense_Mutation p.R192C 0.16 tolerated(0.16) probably_damaging(0.932) TCGA-IB-7651-01 1 159505736 159505736 C T OR10J5 Missense_Mutation p.G21E 0.16 tolerated(0.11) benign(0.071) TCGA-IB-7651-01 1 15986601 15986601 C T RSC1A1 Missense_Mutation p.H80Y 0.05 tolerated(1) benign(0.005) TCGA-IB-7651-01 1 159890321 159890321 C T TAGLN2 5'UTR 0.29 TCGA-IB-7651-01 1 159897170 159897170 G A IGSF9 Missense_Mutation p.P1169S 0.15 tolerated_low_confidence(0.53) benign(0.016) TCGA-IB-7651-01 1 159897224 159897224 C A IGSF9 Missense_Mutation p.A1151S 0.12 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-IB-7651-01 1 159899737 159899737 G A IGSF9 Missense_Mutation p.A698V 0.16 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 1 160011435 160011435 C T KCNJ10 Silent p.V296V 0.16 TCGA-IB-7651-01 1 160094128 160094128 G A ATP1A2 Missense_Mutation p.A180T 0.24 tolerated(0.12) benign(0.44) TCGA-IB-7651-01 1 160099109 160099109 C A ATP1A2 Silent p.L460L 0.18 TCGA-IB-7651-01 1 160109761 160109761 G A ATP1A2 Silent p.R1007R 0.25 TCGA-IB-7651-01 1 160128806 160128806 T C ATP1A4 Silent p.I180I 0.16 TCGA-IB-7651-01 1 160141048 160141048 T C ATP1A4 Missense_Mutation p.I500T 0.24 deleterious(0) probably_damaging(0.942) TCGA-IB-7651-01 1 160156079 160156079 C T ATP1A4 Missense_Mutation p.L995F 0.15 tolerated(1) benign(0.009) TCGA-IB-7651-01 1 160187443 160187443 C A DCAF8 Missense_Mutation p.S732I 0.22 deleterious(0.01) possibly_damaging(0.745) TCGA-IB-7651-01 1 160253413 160253413 G A PEX19 Silent p.F29F 0.29 TCGA-IB-7651-01 1 160259885 160259885 G A COPA 3'UTR 0.25 TCGA-IB-7651-01 1 160261125 160261125 C A COPA Missense_Mutation p.Q1149H 0.26 tolerated(0.05) benign(0.081) TCGA-IB-7651-01 1 160277034 160277034 C T COPA Silent p.A407A 0.28 TCGA-IB-7651-01 1 160312937 160312937 C A COPA Missense_Mutation p.K8N 0.27 deleterious(0) probably_damaging(0.953) TCGA-IB-7651-01 1 160654834 160654834 G A CD48 Silent p.Y76Y 0.19 TCGA-IB-7651-01 1 160851893 160851893 C T ITLN1 Missense_Mutation p.E87K 0.26 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 160914997 160914997 C T ITLN2 Missense_Mutation p.G304E 0.20 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 1 160970463 160970463 C T F11R Missense_Mutation p.G116S 0.14 tolerated(0.2) possibly_damaging(0.646) TCGA-IB-7651-01 1 16101142 16101142 C T FBLIM1 Silent p.G247G 0.11 TCGA-IB-7651-01 1 161017863 161017863 C T ARHGAP30 Missense_Mutation p.R983Q 0.19 tolerated(0.11) benign(0.104) TCGA-IB-7651-01 1 161018943 161018943 T G ARHGAP30 Missense_Mutation p.K623T 0.03 tolerated_low_confidence(0.16) benign(0.015) TCGA-IB-7651-01 1 161044004 161044004 C T PVRL4 Intron 0.24 TCGA-IB-7651-01 1 161094177 161094177 G T DEDD Missense_Mutation p.L26M 0.19 tolerated(0.05) probably_damaging(1) TCGA-IB-7651-01 1 161123792 161123792 C T UFC1 Missense_Mutation p.A2V 0.17 tolerated_low_confidence(1) benign(0.001) TCGA-IB-7651-01 1 161130902 161130902 C T USP21 Missense_Mutation p.R158C 0.17 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-IB-7651-01 1 161133729 161133729 G A USP21 Silent p.T392T 0.15 TCGA-IB-7651-01 1 161138934 161138934 G A PPOX Silent p.P256P 0.17 TCGA-IB-7651-01 1 161140296 161140296 G A PPOX Missense_Mutation p.G362D 0.24 deleterious(0.04) benign(0.263) TCGA-IB-7651-01 1 161141588 161141588 G A B4GALT3 3'UTR 0.24 TCGA-IB-7651-01 1 161161259 161161259 G A ADAMTS4 Missense_Mutation p.A728V 0.18 deleterious(0.02) probably_damaging(1) TCGA-IB-7651-01 1 161168079 161168079 G A ADAMTS4 Silent p.G113G 0.11 TCGA-IB-7651-01 1 161192148 161192148 G A AL590714.1 Missense_Mutation p.G28E 0.09 benign(0) TCGA-IB-7651-01 1 161200760 161200760 C T NR1I3 Intron 0.16 TCGA-IB-7651-01 1 161201197 161201197 G A NR1I3 Missense_Mutation p.L206F 0.25 tolerated(0.97) possibly_damaging(0.817) TCGA-IB-7651-01 1 161277072 161277072 G A MPZ Silent p.P70P 0.16 TCGA-IB-7651-01 1 161487824 161487824 C T FCGR2A Silent p.D280D 0.26 TCGA-IB-7651-01 1 161487866 161487866 G A FCGR2A Silent p.R294R 0.15 TCGA-IB-7651-01 1 161495182 161495182 A C HSPA6 Missense_Mutation p.E245A 0.14 tolerated_low_confidence(0.28) benign(0.003) TCGA-IB-7651-01 1 161495386 161495386 G A HSPA6 Missense_Mutation p.R313H 0.17 deleterious_low_confidence(0.01) benign(0.146) TCGA-IB-7651-01 1 161565352 161565352 C T FCGR2C Missense_Mutation p.T3I 0.22 unknown(0) TCGA-IB-7651-01 1 161569520 161569520 G T FCGR2C Intron 0.08 TCGA-IB-7651-01 1 161596176 161596176 C A FCGR3B Missense_Mutation p.Q148H 0.18 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 1 161654817 161654817 C T RPL31P11 RNA 0.18 TCGA-IB-7651-01 1 161695827 161695827 C T FCRLB Missense_Mutation p.P175L 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 1 161721475 161721475 G A DUSP12 Missense_Mutation p.R121Q 0.17 deleterious(0.03) probably_damaging(0.954) TCGA-IB-7651-01 1 161821543 161821543 C T ATF6 Silent p.L451L 0.15 TCGA-IB-7651-01 1 161970022 161970022 C T OLFML2B Missense_Mutation p.R277Q 0.15 tolerated(0.59) benign(0.004) TCGA-IB-7651-01 1 162324979 162324979 C T NOS1AP Missense_Mutation p.R200C 0.15 tolerated(0.12) benign(0.014) TCGA-IB-7651-01 1 162344026 162344026 T G C1orf111 Missense_Mutation p.S200R 0.25 tolerated(0.05) probably_damaging(0.943) TCGA-IB-7651-01 1 162467986 162467986 G A UHMK1 Missense_Mutation p.A66T 0.25 tolerated(0.29) benign(0.005) TCGA-IB-7651-01 1 16254623 16254623 C T SPEN Missense_Mutation p.R630C 0.20 probably_damaging(0.997) TCGA-IB-7651-01 1 16255163 16255163 C T SPEN Missense_Mutation p.R810W 0.10 probably_damaging(0.997) TCGA-IB-7651-01 1 16258456 16258456 C A SPEN Silent p.V1907V 0.09 TCGA-IB-7651-01 1 16264404 16264404 G A SPEN Missense_Mutation p.R3536Q 0.18 benign(0.412) TCGA-IB-7651-01 1 162737131 162737131 G A DDR2 Nonsense_Mutation p.W425* 0.16 TCGA-IB-7651-01 1 162824821 162824821 C T C1orf110 Missense_Mutation p.A215T 0.14 tolerated(0.26) benign(0.001) TCGA-IB-7651-01 1 16351370 16351370 C A CLCNKA Silent p.I114I 0.06 TCGA-IB-7651-01 1 16353838 16353838 A C CLCNKA Missense_Mutation p.H230P 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 1 16456084 16456084 G A EPHA2 Silent p.R890R 0.10 TCGA-IB-7651-01 1 16460967 16460967 G A EPHA2 Missense_Mutation p.R560C 0.18 deleterious(0.03) possibly_damaging(0.832) TCGA-IB-7651-01 1 16461042 16461042 A G EPHA2 Silent p.L535L 0.21 TCGA-IB-7651-01 1 16464503 16464503 G A EPHA2 Missense_Mutation p.S386L 0.18 tolerated(0.67) benign(0.157) TCGA-IB-7651-01 1 16464553 16464553 G T EPHA2 Nonsense_Mutation p.C369* 0.19 TCGA-IB-7651-01 1 16475444 16475444 G T EPHA2 Missense_Mutation p.N84K 0.10 tolerated(0.27) probably_damaging(0.931) TCGA-IB-7651-01 1 164761883 164761883 G T PBX1 Missense_Mutation p.G140C 0.29 deleterious(0.03) possibly_damaging(0.897) TCGA-IB-7651-01 1 164781364 164781364 G A PBX1 Silent p.S325S 0.24 TCGA-IB-7651-01 1 164789358 164789358 C T PBX1 Silent p.S349S 0.13 TCGA-IB-7651-01 1 165182966 165182966 C T LMX1A Missense_Mutation p.R194H 0.25 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 16531318 16531318 G T ARHGEF19 Missense_Mutation p.L615M 0.21 deleterious(0.04) probably_damaging(0.99) TCGA-IB-7651-01 1 16532534 16532534 C T ARHGEF19 Missense_Mutation p.R448H 0.24 tolerated(0.58) benign(0.139) TCGA-IB-7651-01 1 16534248 16534248 C T ARHGEF19 Missense_Mutation p.R240Q 0.22 deleterious(0.03) benign(0.134) TCGA-IB-7651-01 1 165513649 165513649 G A LRRC52 Missense_Mutation p.C39Y 0.07 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 16558646 16558646 G A RSG1 Missense_Mutation p.A225V 0.09 tolerated(0.51) benign(0.004) TCGA-IB-7651-01 1 165634286 165634286 C A ALDH9A1 Silent p.V477V 0.13 TCGA-IB-7651-01 1 165712439 165712439 A C TMCO1 Missense_Mutation p.F196V 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 165737482 165737482 C A TMCO1 Missense_Mutation p.R83M 0.07 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 1 16579592 16579592 G A FBXO42 Missense_Mutation p.A307V 0.10 tolerated(0.1) benign(0.038) TCGA-IB-7651-01 1 166039799 166039799 G A FAM78B Silent p.S155S 0.19 TCGA-IB-7651-01 1 166039800 166039800 C T FAM78B Missense_Mutation p.S155N 0.26 tolerated(0.17) probably_damaging(0.986) TCGA-IB-7651-01 1 166039940 166039940 A G FAM78B Silent p.D108D 0.09 TCGA-IB-7651-01 1 16641844 16641844 C T FBXO42 Missense_Mutation p.G24R 0.08 deleterious_low_confidence(0) benign(0.093) TCGA-IB-7651-01 1 166818370 166818370 A G POGK Missense_Mutation p.D185G 0.19 deleterious_low_confidence(0) benign(0.243) TCGA-IB-7651-01 1 166819057 166819057 A G POGK Missense_Mutation p.Y414C 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-IB-7651-01 1 166826745 166826745 A G TADA1 3'UTR 0.17 TCGA-IB-7651-01 1 166991023 166991023 C A MAEL Missense_Mutation p.N412K 0.15 deleterious_low_confidence(0.04) benign(0.046) TCGA-IB-7651-01 1 167023611 167023611 C A GPA33 Missense_Mutation p.R307M 0.27 deleterious(0) possibly_damaging(0.707) TCGA-IB-7651-01 1 1670364 1670364 A G SLC35E2 Missense_Mutation p.M152T 0.12 tolerated(0.16) probably_damaging(0.96) TCGA-IB-7651-01 1 167088604 167088604 T C DUSP27 Missense_Mutation p.Y186H 0.10 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 167096291 167096291 G A DUSP27 Silent p.Q641Q 0.15 TCGA-IB-7651-01 1 167097083 167097083 G T DUSP27 Missense_Mutation p.Q905H 0.22 tolerated(0.06) benign(0.014) TCGA-IB-7651-01 1 167097360 167097360 G A DUSP27 Missense_Mutation p.G998S 0.13 deleterious(0.01) benign(0.197) TCGA-IB-7651-01 1 167097700 167097700 G T DUSP27 Missense_Mutation p.R1111M 0.12 deleterious(0) possibly_damaging(0.838) TCGA-IB-7651-01 1 167097730 167097730 G A DUSP27 Missense_Mutation p.R1121Q 0.13 deleterious(0.04) possibly_damaging(0.55) TCGA-IB-7651-01 1 16731528 16731528 G A SPATA21 Missense_Mutation p.L249F 0.12 tolerated(0.09) benign(0.272) TCGA-IB-7651-01 1 16731589 16731589 G A SPATA21 Silent p.S228S 0.11 TCGA-IB-7651-01 1 167381303 167381303 G A POU2F1 Missense_Mutation p.A555T 0.16 tolerated(0.1) unknown(0) TCGA-IB-7651-01 1 16770133 16770133 G A NECAP2 Silent p.A33A 0.12 TCGA-IB-7651-01 1 16775694 16775694 G A NECAP2 Missense_Mutation p.A163T 0.23 deleterious(0.04) possibly_damaging(0.806) TCGA-IB-7651-01 1 167778989 167778989 C A ADCY10 Missense_Mutation p.G1587C 0.04 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 1 167793916 167793916 C T ADCY10 Missense_Mutation p.G1310R 0.19 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 1 167793999 167793999 A T ADCY10 Missense_Mutation p.I1282N 0.17 tolerated(0.13) benign(0.439) TCGA-IB-7651-01 1 167802330 167802330 C T ADCY10 Missense_Mutation p.R1163Q 0.26 tolerated(0.09) benign(0.124) TCGA-IB-7651-01 1 167863127 167863127 G T ADCY10 Silent p.S264S 0.18 TCGA-IB-7651-01 1 167874257 167874257 C T ADCY10 Missense_Mutation p.G41E 0.23 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 167874374 167874374 T G ADCY10 Missense_Mutation p.N2T 0.22 deleterious_low_confidence(0.01) benign(0.08) TCGA-IB-7651-01 1 167944232 167944232 T C DCAF6 Silent p.C139C 0.09 TCGA-IB-7651-01 1 16810905 16810905 C T CROCCP3 RNA 0.12 TCGA-IB-7651-01 1 168153250 168153250 C T TIPRL Missense_Mutation p.A72V 0.18 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 1 168205957 168205957 A G SFT2D2 Missense_Mutation p.N121S 0.07 tolerated(0.11) benign(0.007) TCGA-IB-7651-01 1 168211761 168211761 G A SFT2D2 Missense_Mutation p.A156T 0.16 tolerated(0.45) benign(0.005) TCGA-IB-7651-01 1 168260462 168260462 C T TBX19 Silent p.L90L 0.25 TCGA-IB-7651-01 1 16945653 16945653 G A RP5-1182A14.5 3'Flank 0.05 TCGA-IB-7651-01 1 169511289 169511289 C T F5 Silent p.Q1013Q 0.23 TCGA-IB-7651-01 1 169524465 169524465 T G F5 Missense_Mutation p.E358A 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 169524540 169524540 G T F5 Missense_Mutation p.T333N 0.27 tolerated(0.07) probably_damaging(0.999) TCGA-IB-7651-01 1 169578832 169578832 G A SELP Missense_Mutation p.R415C 0.16 tolerated(0.11) possibly_damaging(0.764) TCGA-IB-7651-01 1 169588378 169588378 G A SELP Missense_Mutation p.A28V 0.13 tolerated(0.3) benign(0.018) TCGA-IB-7651-01 1 169695051 169695051 G A SELE Missense_Mutation p.A591V 0.14 tolerated(0.06) benign(0.282) TCGA-IB-7651-01 1 169822680 169822680 G T C1orf112 3'UTR 0.21 TCGA-IB-7651-01 1 169847944 169847944 C T SCYL3 Missense_Mutation p.R61H 0.07 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 169890879 169890879 G A KIFAP3 Missense_Mutation p.R773C 0.14 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-IB-7651-01 1 169941689 169941689 G A KIFAP3 Nonsense_Mutation p.R650* 0.10 TCGA-IB-7651-01 1 169951979 169951979 G A KIFAP3 Silent p.I512I 0.08 TCGA-IB-7651-01 1 17046474 17046474 A C ESPNP RNA 0.13 TCGA-IB-7651-01 1 170959134 170959134 C T MROH9 Missense_Mutation p.P340S 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 171083225 171083225 C T FMO3 Silent p.N302N 0.26 TCGA-IB-7651-01 1 171177942 171177942 A G FMO2 Silent p.E422E 0.15 TCGA-IB-7651-01 1 171548988 171548988 C T PRRC2C Missense_Mutation p.P2430S 0.24 probably_damaging(0.998) TCGA-IB-7651-01 1 171673643 171673643 A G VAMP4 3'UTR 0.16 TCGA-IB-7651-01 1 171759640 171759640 C T METTL13 Missense_Mutation p.A453V 0.24 tolerated(0.27) benign(0.004) TCGA-IB-7651-01 1 171765763 171765763 C A METTL13 Missense_Mutation p.P656H 0.24 deleterious(0.02) benign(0.195) TCGA-IB-7651-01 1 1718817 1718817 C T GNB1 Missense_Mutation p.A326T 0.08 deleterious(0) probably_damaging(0.938) TCGA-IB-7651-01 1 172377120 172377120 G A DNM3 3'UTR 0.23 TCGA-IB-7651-01 1 172558587 172558587 G A SUCO Silent p.E782E 0.25 TCGA-IB-7651-01 1 17256517 17256517 G A CROCC Silent p.L176L 0.11 TCGA-IB-7651-01 1 172579371 172579371 G A SUCO Missense_Mutation p.G1246D 0.25 deleterious(0.01) probably_damaging(0.984) TCGA-IB-7651-01 1 172634947 172634947 A G FASLG Missense_Mutation p.M213V 0.15 tolerated(0.1) benign(0.002) TCGA-IB-7651-01 1 17281989 17281989 G T CROCC Silent p.R1216R 0.09 TCGA-IB-7651-01 1 17301766 17301766 C T MFAP2 Missense_Mutation p.R149Q 0.14 tolerated(0.07) probably_damaging(0.997) TCGA-IB-7651-01 1 173486780 173486780 C A SLC9C2 Missense_Mutation p.D935Y 0.09 deleterious(0.04) benign(0.026) TCGA-IB-7651-01 1 173542452 173542452 A C SLC9C2 Missense_Mutation p.I305M 0.21 tolerated(1) benign(0.022) TCGA-IB-7651-01 1 173722355 173722355 C T KLHL20 Silent p.L254L 0.12 TCGA-IB-7651-01 1 173744779 173744779 G A KLHL20 Missense_Mutation p.R479H 0.29 deleterious(0.05) benign(0.126) TCGA-IB-7651-01 1 173744849 173744849 T C KLHL20 Silent p.C502C 0.15 TCGA-IB-7651-01 1 173772420 173772420 G A CENPL Missense_Mutation p.A261V 0.15 deleterious(0.02) possibly_damaging(0.615) TCGA-IB-7651-01 1 173833329 173833329 T C ZBTB37 5'Flank 0.12 TCGA-IB-7651-01 1 173878870 173878870 C T SERPINC1 Missense_Mutation p.A325T 0.15 tolerated(0.44) benign(0.001) TCGA-IB-7651-01 1 173881079 173881079 C T SERPINC1 Missense_Mutation p.R161Q 0.15 tolerated(0.1) probably_damaging(0.977) TCGA-IB-7651-01 1 173931058 173931058 G A RC3H1 Silent p.H669H 0.28 TCGA-IB-7651-01 1 17410236 17410236 G A PADI2 Silent p.G345G 0.12 TCGA-IB-7651-01 1 174190149 174190149 G A RABGAP1L Missense_Mutation p.E60K 0.16 tolerated(0.12) benign(0.025) TCGA-IB-7651-01 1 174210743 174210743 A G RABGAP1L Missense_Mutation p.H222R 0.24 tolerated(0.39) benign(0.002) TCGA-IB-7651-01 1 174241551 174241551 G A RABGAP1L Splice_Site p.X329_splice 0.17 TCGA-IB-7651-01 1 174363157 174363157 G A RABGAP1L Silent p.P528P 0.08 TCGA-IB-7651-01 1 174979110 174979110 T C CACYBP Silent p.V194V 0.28 TCGA-IB-7651-01 1 175048561 175048561 C T TNN Missense_Mutation p.R168W 0.29 deleterious(0.03) benign(0.339) TCGA-IB-7651-01 1 175299240 175299240 G T TNR Missense_Mutation p.L1255I 0.27 tolerated(0.12) benign(0.147) TCGA-IB-7651-01 1 175304878 175304878 G A TNR Silent p.G1200G 0.15 TCGA-IB-7651-01 1 175332862 175332862 A C TNR Missense_Mutation p.S897A 0.16 deleterious(0.05) benign(0.019) TCGA-IB-7651-01 1 175335086 175335086 C T TNR Missense_Mutation p.A748T 0.26 tolerated(1) benign(0.002) TCGA-IB-7651-01 1 175365935 175365935 G T TNR Missense_Mutation p.P329T 0.14 deleterious(0) probably_damaging(0.969) TCGA-IB-7651-01 1 175375803 175375803 G A TNR Silent p.G16G 0.09 TCGA-IB-7651-01 1 17570600 17570600 C T PADI1 Silent p.S618S 0.12 TCGA-IB-7651-01 1 176526268 176526268 G A PAPPA2 Silent p.E270E 0.23 TCGA-IB-7651-01 1 17664602 17664602 G A PADI4 Missense_Mutation p.E160K 0.17 tolerated(0.54) benign(0.002) TCGA-IB-7651-01 1 176738773 176738773 C T PAPPA2 Missense_Mutation p.H1452Y 0.09 tolerated(0.86) benign(0.002) TCGA-IB-7651-01 1 17674450 17674450 C T PADI4 Silent p.I354I 0.07 TCGA-IB-7651-01 1 176760572 176760572 A G PAPPA2 Silent p.S1658S 0.19 TCGA-IB-7651-01 1 176769219 176769219 G A PAPPA2 Missense_Mutation p.R1718H 0.04 deleterious(0.01) possibly_damaging(0.833) TCGA-IB-7651-01 1 176857313 176857313 G T ASTN1 Missense_Mutation p.L990I 0.16 tolerated(0.07) benign(0.064) TCGA-IB-7651-01 1 176863860 176863860 C T ASTN1 Silent p.A926A 0.24 TCGA-IB-7651-01 1 176992602 176992602 G A ASTN1 Missense_Mutation p.A459V 0.28 tolerated(1) benign(0.006) TCGA-IB-7651-01 1 176992614 176992614 C T ASTN1 Missense_Mutation p.S455N 0.32 deleterious(0) probably_damaging(0.937) TCGA-IB-7651-01 1 176992704 176992704 C T ASTN1 Missense_Mutation p.S425N 0.10 deleterious(0) benign(0.05) TCGA-IB-7651-01 1 177000083 177000083 C T ASTN1 Missense_Mutation p.D291N 0.22 deleterious_low_confidence(0.04) probably_damaging(0.913) TCGA-IB-7651-01 1 177030297 177030297 T G ASTN1 Missense_Mutation p.S130R 0.24 tolerated_low_confidence(0.54) benign(0.049) TCGA-IB-7651-01 1 177133624 177133624 C T ASTN1 Silent p.E63E 0.24 TCGA-IB-7651-01 1 17722154 17722154 C T PADI6 RNA 0.10 TCGA-IB-7651-01 1 177247923 177247923 T C BRINP2 Splice_Site p.X412_splice 0.05 TCGA-IB-7651-01 1 17748709 17748709 C A RCC2 Missense_Mutation p.S245I 0.10 tolerated(0.14) benign(0.335) TCGA-IB-7651-01 1 17749218 17749218 T G RCC2 Missense_Mutation p.H213P 0.15 deleterious(0.01) possibly_damaging(0.69) TCGA-IB-7651-01 1 177913771 177913771 C T SEC16B Silent p.E602E 0.22 TCGA-IB-7651-01 1 177930826 177930826 G A SEC16B Missense_Mutation p.S229F 0.15 deleterious(0) probably_damaging(0.937) TCGA-IB-7651-01 1 178408655 178408655 C A RASAL2 Missense_Mutation p.P258H 0.11 deleterious(0.01) benign(0.413) TCGA-IB-7651-01 1 178425861 178425861 C T RASAL2 Silent p.T739T 0.07 TCGA-IB-7651-01 1 178427268 178427268 C T RASAL2 Silent p.N947N 0.23 TCGA-IB-7651-01 1 178442279 178442279 C T RASAL2 Missense_Mutation p.R1250W 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 178442331 178442331 T G RASAL2 Missense_Mutation p.L1267R 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-IB-7651-01 1 178489945 178489945 C T TEX35 Missense_Mutation p.T160M 0.20 tolerated_low_confidence(0.58) probably_damaging(0.994) TCGA-IB-7651-01 1 178858792 178858792 C A RALGPS2 Missense_Mutation p.S403Y 0.24 deleterious(0.03) probably_damaging(0.947) TCGA-IB-7651-01 1 178871296 178871296 C A RALGPS2 Missense_Mutation p.A527D 0.16 tolerated(0.06) benign(0.209) TCGA-IB-7651-01 1 179078040 179078040 A T ABL2 Missense_Mutation p.S788T 0.24 tolerated_low_confidence(0.05) possibly_damaging(0.659) TCGA-IB-7651-01 1 179112077 179112077 C T ABL2 Intron 0.16 TCGA-IB-7651-01 1 179414170 179414170 G T AXDND1 Missense_Mutation p.K543N 0.25 deleterious(0.01) benign(0.313) TCGA-IB-7651-01 1 17945899 17945899 C A ARHGEF10L Missense_Mutation p.P301T 0.09 deleterious(0) benign(0.096) TCGA-IB-7651-01 1 179503899 179503899 A C AXDND1 Missense_Mutation p.K945Q 0.19 deleterious(0.02) possibly_damaging(0.788) TCGA-IB-7651-01 1 179523703 179523703 C T AXDND1 3'UTR 0.28 TCGA-IB-7651-01 1 179533830 179533830 C T NPHS2 Missense_Mutation p.V125I 0.16 tolerated(1) benign(0.001) TCGA-IB-7651-01 1 179564779 179564779 G A TDRD5 Silent p.Q219Q 0.26 TCGA-IB-7651-01 1 179638537 179638537 C A TDRD5 Missense_Mutation p.S953Y 0.16 tolerated(0.1) benign(0.252) TCGA-IB-7651-01 1 179782952 179782952 C T FAM163A Silent p.D44D 0.25 TCGA-IB-7651-01 1 179820358 179820358 C A TOR1AIP2 Nonsense_Mutation p.E59* 0.15 TCGA-IB-7651-01 1 179983348 179983348 A G CEP350 Missense_Mutation p.K587R 0.25 probably_damaging(0.999) TCGA-IB-7651-01 1 180017679 180017679 G A CEP350 Missense_Mutation p.S1544N 0.14 probably_damaging(0.947) TCGA-IB-7651-01 1 180022124 180022124 A G CEP350 Silent p.T1604T 0.20 TCGA-IB-7651-01 1 180155237 180155237 C T QSOX1 Missense_Mutation p.R313W 0.09 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 1 18023551 18023551 C T ARHGEF10L Silent p.L1172L 0.27 TCGA-IB-7651-01 1 180240768 180240768 G T LHX4 Intron 0.29 TCGA-IB-7651-01 1 180772672 180772672 A C XPR1 Missense_Mutation p.Q124H 0.24 tolerated(0.28) benign(0.004) TCGA-IB-7651-01 1 180793991 180793991 C T XPR1 Missense_Mutation p.T289M 0.24 tolerated(0.35) benign(0.274) TCGA-IB-7651-01 1 180794394 180794394 G A XPR1 Missense_Mutation p.A350T 0.26 tolerated(0.42) benign(0.091) TCGA-IB-7651-01 1 180849411 180849411 C T XPR1 Missense_Mutation p.R670C 0.25 deleterious(0) possibly_damaging(0.677) TCGA-IB-7651-01 1 180886166 180886166 C T KIAA1614 Silent p.N309N 0.18 TCGA-IB-7651-01 1 180904329 180904329 C T KIAA1614 Silent p.S428S 0.21 TCGA-IB-7651-01 1 180904637 180904637 G A KIAA1614 Missense_Mutation p.G531D 0.15 tolerated(0.4) benign(0.091) TCGA-IB-7651-01 1 180905169 180905169 G T KIAA1614 Missense_Mutation p.K708N 0.18 tolerated(0.14) benign(0.044) TCGA-IB-7651-01 1 180914338 180914338 G T KIAA1614 Intron 0.26 TCGA-IB-7651-01 1 181003204 181003204 G A MR1 Missense_Mutation p.D21N 0.15 tolerated(0.56) benign(0.002) TCGA-IB-7651-01 1 181019366 181019366 G A MR1 Missense_Mutation p.C183Y 0.16 deleterious(0.01) benign(0.134) TCGA-IB-7651-01 1 181021609 181021609 G A MR1 Silent p.E281E 0.11 TCGA-IB-7651-01 1 181024573 181024573 C A MR1 3'UTR 0.25 TCGA-IB-7651-01 1 181620541 181620541 T A CACNA1E Missense_Mutation p.F340Y 0.15 deleterious(0) benign(0.015) TCGA-IB-7651-01 1 181687258 181687258 G A CACNA1E Silent p.G531G 0.20 TCGA-IB-7651-01 1 181693609 181693609 C T CACNA1E Missense_Mutation p.T693M 0.23 deleterious(0.01) probably_damaging(0.938) TCGA-IB-7651-01 1 181693628 181693628 G A CACNA1E Silent p.L699L 0.18 TCGA-IB-7651-01 1 181701981 181701981 G A CACNA1E Missense_Mutation p.R920H 0.15 tolerated(0.18) possibly_damaging(0.522) TCGA-IB-7651-01 1 181701985 181701985 C T CACNA1E Silent p.S921S 0.10 TCGA-IB-7651-01 1 181702155 181702155 C A CACNA1E Missense_Mutation p.A978D 0.14 tolerated(0.36) benign(0.001) TCGA-IB-7651-01 1 181732641 181732641 C A CACNA1E Missense_Mutation p.L1597M 0.17 deleterious(0) possibly_damaging(0.887) TCGA-IB-7651-01 1 181741352 181741352 C T CACNA1E Silent p.F1708F 0.25 TCGA-IB-7651-01 1 181762906 181762906 C T CACNA1E Missense_Mutation p.P2002S 0.24 deleterious(0) possibly_damaging(0.641) TCGA-IB-7651-01 1 181767892 181767892 C T CACNA1E Silent p.R2288R 0.29 TCGA-IB-7651-01 1 182026331 182026331 C T ZNF648 Missense_Mutation p.R272H 0.21 tolerated(1) benign(0.001) TCGA-IB-7651-01 1 182026618 182026618 C T ZNF648 Silent p.A176A 0.17 TCGA-IB-7651-01 1 182555156 182555156 C A RNASEL Missense_Mutation p.E262D 0.09 tolerated(0.48) benign(0) TCGA-IB-7651-01 1 182635136 182635136 G A RGS8 Missense_Mutation p.A72V 0.16 tolerated(0.13) benign(0.002) TCGA-IB-7651-01 1 182638801 182638801 G A RGS8 Intron 0.30 TCGA-IB-7651-01 1 182844012 182844012 C T DHX9 Nonsense_Mutation p.Q580* 0.25 TCGA-IB-7651-01 1 182846018 182846018 T G DHX9 Silent p.V726V 0.18 TCGA-IB-7651-01 1 182847247 182847247 C T DHX9 Nonsense_Mutation p.R764* 0.17 TCGA-IB-7651-01 1 182850546 182850546 C T DHX9 Silent p.A924A 0.08 TCGA-IB-7651-01 1 182852411 182852411 C T DHX9 Missense_Mutation p.R1018C 0.18 deleterious(0.04) benign(0.094) TCGA-IB-7651-01 1 182869360 182869360 C A SHCBP1L Missense_Mutation p.A574S 0.14 tolerated(0.06) benign(0.156) TCGA-IB-7651-01 1 183200178 183200178 C T LAMC2 Silent p.G599G 0.16 TCGA-IB-7651-01 1 183212466 183212466 G A LAMC2 Silent p.K1171K 0.21 TCGA-IB-7651-01 1 183513549 183513549 C T SMG7 Missense_Mutation p.T589I 0.27 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-IB-7651-01 1 183546760 183546760 G T NCF2 Missense_Mutation p.L114I 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-IB-7651-01 1 183596485 183596485 T C ARPC5 3'UTR 0.10 TCGA-IB-7651-01 1 183604754 183604754 A G ARPC5 Missense_Mutation p.V14A 0.13 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 1 183874037 183874037 T G RGL1 Nonsense_Mutation p.Y503* 0.26 TCGA-IB-7651-01 1 184588789 184588789 C A C1orf21 3'UTR 0.27 TCGA-IB-7651-01 1 184859344 184859344 C A FAM129A Nonsense_Mutation p.G111* 0.28 TCGA-IB-7651-01 1 185153444 185153444 T C SWT1 Missense_Mutation p.F403S 0.32 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 185171911 185171911 C A SWT1 Missense_Mutation p.P550H 0.18 deleterious(0.04) benign(0.155) TCGA-IB-7651-01 1 185278210 185278210 C T IVNS1ABP Missense_Mutation p.G69E 0.24 tolerated(0.69) benign(0.145) TCGA-IB-7651-01 1 185894259 185894259 C A HMCN1 Missense_Mutation p.L456I 0.07 probably_damaging(0.952) TCGA-IB-7651-01 1 185969264 185969264 C T HMCN1 Missense_Mutation p.T1321I 0.21 possibly_damaging(0.832) TCGA-IB-7651-01 1 185992272 185992272 A G HMCN1 Silent p.Q1912Q 0.22 TCGA-IB-7651-01 1 186022185 186022185 A C HMCN1 Missense_Mutation p.N2227H 0.16 benign(0.02) TCGA-IB-7651-01 1 186024739 186024739 C T HMCN1 Silent p.G2359G 0.22 TCGA-IB-7651-01 1 186034555 186034555 G A HMCN1 Missense_Mutation p.V2567I 0.12 probably_damaging(0.989) TCGA-IB-7651-01 1 186039890 186039890 G A HMCN1 Splice_Site p.X2713_splice 0.04 TCGA-IB-7651-01 1 186052023 186052023 C T HMCN1 Silent p.I2938I 0.13 TCGA-IB-7651-01 1 186057863 186057863 A C HMCN1 Missense_Mutation p.K3235Q 0.15 probably_damaging(0.997) TCGA-IB-7651-01 1 186088957 186088957 G A HMCN1 Missense_Mutation p.G4013R 0.25 probably_damaging(1) TCGA-IB-7651-01 1 186097274 186097274 T C HMCN1 Missense_Mutation p.V4252A 0.24 benign(0.357) TCGA-IB-7651-01 1 186113795 186113795 T G HMCN1 Missense_Mutation p.S4742R 0.18 possibly_damaging(0.609) TCGA-IB-7651-01 1 186273347 186273347 A C PRG4 Missense_Mutation p.K143Q 0.13 probably_damaging(0.997) TCGA-IB-7651-01 1 186277192 186277192 A C PRG4 Missense_Mutation p.T781P 0.08 unknown(0) TCGA-IB-7651-01 1 186277618 186277618 G A PRG4 Missense_Mutation p.D923N 0.25 unknown(0) TCGA-IB-7651-01 1 186307228 186307228 T C TPR Silent p.Q1433Q 0.27 TCGA-IB-7651-01 1 186319457 186319457 C A TPR Nonsense_Mutation p.E892* 0.15 TCGA-IB-7651-01 1 186370258 186370258 T C OCLM Silent p.Y27Y 0.28 TCGA-IB-7651-01 1 186645084 186645084 C T PTGS2 Silent p.L401L 0.24 TCGA-IB-7651-01 1 18691979 18691979 C T IGSF21 Missense_Mutation p.T268M 0.09 deleterious(0.01) probably_damaging(0.97) TCGA-IB-7651-01 1 18692065 18692065 G A IGSF21 Missense_Mutation p.G297S 0.20 deleterious(0.04) probably_damaging(0.984) TCGA-IB-7651-01 1 18703915 18703915 G A IGSF21 Silent p.E441E 0.06 TCGA-IB-7651-01 1 18808505 18808505 G A KLHDC7A Missense_Mutation p.E344K 0.07 tolerated(0.27) benign(0.002) TCGA-IB-7651-01 1 190067938 190067938 G A BRINP3 Missense_Mutation p.T504M 0.26 tolerated(0.4) benign(0.031) TCGA-IB-7651-01 1 19018338 19018338 C T PAX7 Missense_Mutation p.A226V 0.11 deleterious(0.03) possibly_damaging(0.785) TCGA-IB-7651-01 1 19166262 19166262 C T TAS1R2 Missense_Mutation p.S784N 0.17 tolerated(0.59) benign(0.001) TCGA-IB-7651-01 1 19175848 19175848 G A TAS1R2 Missense_Mutation p.T485I 0.07 deleterious(0) probably_damaging(0.918) TCGA-IB-7651-01 1 19181132 19181132 C T TAS1R2 Missense_Mutation p.D278N 0.09 deleterious(0.01) probably_damaging(0.969) TCGA-IB-7651-01 1 19209781 19209781 C T ALDH4A1 Missense_Mutation p.G199S 0.21 tolerated(0.1) probably_damaging(0.998) TCGA-IB-7651-01 1 19212023 19212023 C A ALDH4A1 Missense_Mutation p.D133Y 0.16 deleterious(0) probably_damaging(0.981) TCGA-IB-7651-01 1 192545470 192545470 A G RGS1 Missense_Mutation p.M65V 0.08 tolerated(0.35) benign(0.005) TCGA-IB-7651-01 1 192985278 192985278 T C UCHL5 3'UTR 0.19 TCGA-IB-7651-01 1 193028799 193028799 C A UCHL5 5'Flank 0.21 TCGA-IB-7651-01 1 193053895 193053895 C T TROVE2 3'UTR 0.20 TCGA-IB-7651-01 1 193074840 193074840 C T GLRX2 5'UTR 0.12 TCGA-IB-7651-01 1 193104572 193104572 G A CDC73 Missense_Mutation p.R120Q 0.25 tolerated(0.11) benign(0.183) TCGA-IB-7651-01 1 193111038 193111038 G A CDC73 Missense_Mutation p.A191T 0.19 tolerated(0.06) benign(0.018) TCGA-IB-7651-01 1 193117091 193117091 C T CDC73 Missense_Mutation p.P275L 0.24 tolerated(0.1) benign(0.019) TCGA-IB-7651-01 1 19431088 19431088 T C UBR4 Missense_Mutation p.S4240G 0.12 possibly_damaging(0.827) TCGA-IB-7651-01 1 19440008 19440008 A C UBR4 Intron 0.13 TCGA-IB-7651-01 1 19440146 19440146 G A UBR4 Intron 0.11 TCGA-IB-7651-01 1 19444460 19444460 T C UBR4 Intron 0.15 TCGA-IB-7651-01 1 19447793 19447793 C A UBR4 Missense_Mutation p.S3344I 0.10 benign(0.016) TCGA-IB-7651-01 1 19470518 19470518 C T UBR4 Missense_Mutation p.R2712K 0.11 possibly_damaging(0.468) TCGA-IB-7651-01 1 19486689 19486689 G A UBR4 Silent p.A1831A 0.13 TCGA-IB-7651-01 1 19524267 19524267 G T UBR4 Missense_Mutation p.P264T 0.04 benign(0.299) TCGA-IB-7651-01 1 19525329 19525329 C T UBR4 Missense_Mutation p.A158T 0.09 benign(0.194) TCGA-IB-7651-01 1 19545802 19545802 G A EMC1 Nonsense_Mutation p.R993* 0.22 TCGA-IB-7651-01 1 19566393 19566393 G T EMC1 Missense_Mutation p.F291L 0.06 tolerated(0.19) possibly_damaging(0.577) TCGA-IB-7651-01 1 1956825 1956825 C A GABRD Silent p.I78I 0.11 TCGA-IB-7651-01 1 19584466 19584466 G A MRTO4 Missense_Mutation p.A161T 0.18 tolerated(0.35) benign(0.011) TCGA-IB-7651-01 1 19600445 19600445 C T AKR7L 5'UTR 0.25 TCGA-IB-7651-01 1 1961614 1961614 C T GABRD Missense_Mutation p.R418W 0.09 deleterious(0.03) benign(0.326) TCGA-IB-7651-01 1 196227349 196227349 G T KCNT2 Missense_Mutation p.H1062Q 0.23 deleterious(0.02) possibly_damaging(0.893) TCGA-IB-7651-01 1 19633502 19633502 C A AKR7A2 Missense_Mutation p.R261M 0.11 deleterious(0.02) benign(0.242) TCGA-IB-7651-01 1 196642123 196642123 C A CFH Missense_Mutation p.P25H 0.12 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 196659307 196659307 C T CFH Missense_Mutation p.A425V 0.24 tolerated(0.19) benign(0.015) TCGA-IB-7651-01 1 196684801 196684801 A T CFH Missense_Mutation p.D533V 0.04 deleterious(0) possibly_damaging(0.862) TCGA-IB-7651-01 1 196800998 196800998 C A CFHR1 Missense_Mutation p.L288I 0.35 tolerated(0.49) benign(0.206) TCGA-IB-7651-01 1 197032070 197032070 G A F13B Missense_Mutation p.A61V 0.10 tolerated(0.35) benign(0.232) TCGA-IB-7651-01 1 197069629 197069629 C A ASPM Missense_Mutation p.A2918S 0.14 tolerated(0.21) possibly_damaging(0.831) TCGA-IB-7651-01 1 197071117 197071117 G A ASPM Silent p.L2422L 0.16 TCGA-IB-7651-01 1 197072431 197072431 G T ASPM Missense_Mutation p.H1984N 0.21 deleterious(0) possibly_damaging(0.901) TCGA-IB-7651-01 1 197072533 197072533 C A ASPM Missense_Mutation p.A1950S 0.26 tolerated(0.33) benign(0.039) TCGA-IB-7651-01 1 197072923 197072923 G A ASPM Silent p.L1820L 0.06 TCGA-IB-7651-01 1 197073218 197073218 C A ASPM Missense_Mutation p.K1721N 0.09 tolerated(0.42) benign(0.365) TCGA-IB-7651-01 1 197074013 197074013 C T ASPM Nonsense_Mutation p.W1456* 0.13 TCGA-IB-7651-01 1 197091137 197091137 G T ASPM Missense_Mutation p.L1260I 0.07 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 197097665 197097665 G A ASPM Missense_Mutation p.A964V 0.16 deleterious(0) probably_damaging(0.945) TCGA-IB-7651-01 1 197111833 197111833 C T ASPM Missense_Mutation p.A517T 0.16 deleterious(0.04) benign(0.231) TCGA-IB-7651-01 1 197168633 197168633 C T ZBTB41 Missense_Mutation p.S324N 0.17 tolerated(0.14) benign(0.017) TCGA-IB-7651-01 1 197169467 197169467 T G ZBTB41 Missense_Mutation p.E46A 0.15 tolerated_low_confidence(0.24) benign(0.014) TCGA-IB-7651-01 1 197297570 197297570 A C CRB1 Missense_Mutation p.N30T 0.22 tolerated(0.11) probably_damaging(0.989) TCGA-IB-7651-01 1 197297875 197297875 C T CRB1 Missense_Mutation p.P132S 0.17 tolerated(0.36) benign(0.197) TCGA-IB-7651-01 1 197298117 197298117 T C CRB1 Silent p.C212C 0.27 TCGA-IB-7651-01 1 197316584 197316584 C T CRB1 Silent p.D321D 0.15 TCGA-IB-7651-01 1 197390735 197390735 G A CRB1 Missense_Mutation p.A593T 0.08 tolerated(1) benign(0.004) TCGA-IB-7651-01 1 197396679 197396679 T C CRB1 Missense_Mutation p.F742L 0.23 deleterious(0.01) benign(0.079) TCGA-IB-7651-01 1 197404736 197404736 T G CRB1 Missense_Mutation p.F1248C 0.13 deleterious(0) probably_damaging(0.966) TCGA-IB-7651-01 1 197875015 197875015 T C C1orf53 Silent p.S118S 0.26 TCGA-IB-7651-01 1 198201767 198201767 G T NEK7 Missense_Mutation p.Q19H 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.702) TCGA-IB-7651-01 1 198687417 198687417 G A PTPRC Missense_Mutation p.D549N 0.20 tolerated(1) benign(0.002) TCGA-IB-7651-01 1 198718653 198718653 A C PTPRC Missense_Mutation p.K1016T 0.20 deleterious(0) probably_damaging(0.965) TCGA-IB-7651-01 1 19992447 19992447 G A HTR6 Silent p.S67S 0.11 TCGA-IB-7651-01 1 20009753 20009753 G A TMCO4 Missense_Mutation p.T562I 0.22 tolerated_low_confidence(0.15) benign(0.001) TCGA-IB-7651-01 1 200377323 200377323 C T ZNF281 Missense_Mutation p.G504D 0.19 tolerated(1) benign(0.053) TCGA-IB-7651-01 1 200524583 200524583 C T KIF14 Splice_Site p.X1452_splice 0.26 TCGA-IB-7651-01 1 200544719 200544719 C A KIF14 Missense_Mutation p.R1189M 0.18 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 1 200628173 200628173 C A DDX59 Missense_Mutation p.K348N 0.14 deleterious(0.05) benign(0.061) TCGA-IB-7651-01 1 200635067 200635067 C T DDX59 Missense_Mutation p.E268K 0.27 tolerated(0.34) benign(0.032) TCGA-IB-7651-01 1 200635738 200635738 G T DDX59 Missense_Mutation p.A44D 0.17 tolerated_low_confidence(0.37) benign(0.04) TCGA-IB-7651-01 1 20063940 20063940 G T TMCO4 Missense_Mutation p.P397T 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 200817753 200817753 T G CAMSAP2 Missense_Mutation p.I619S 0.22 deleterious(0.02) probably_damaging(0.936) TCGA-IB-7651-01 1 200817897 200817897 C A CAMSAP2 Missense_Mutation p.T667N 0.29 tolerated(0.09) benign(0.02) TCGA-IB-7651-01 1 200819344 200819344 C A CAMSAP2 Nonsense_Mutation p.C1149* 0.12 TCGA-IB-7651-01 1 200824013 200824013 C T CAMSAP2 Missense_Mutation p.P1298S 0.26 tolerated(0.25) benign(0.036) TCGA-IB-7651-01 1 200842741 200842741 C T GPR25 Silent p.G192G 0.07 TCGA-IB-7651-01 1 200959456 200959456 C A KIF21B Missense_Mutation p.R947M 0.23 deleterious(0) possibly_damaging(0.671) TCGA-IB-7651-01 1 200969089 200969089 G A KIF21B Silent p.P563P 0.24 TCGA-IB-7651-01 1 200974440 200974440 T C KIF21B Missense_Mutation p.D243G 0.16 deleterious(0.04) benign(0.053) TCGA-IB-7651-01 1 200978481 200978481 C A KIF21B Missense_Mutation p.W59C 0.25 tolerated(0.05) probably_damaging(0.996) TCGA-IB-7651-01 1 201010662 201010662 G A CACNA1S Nonsense_Mutation p.R1702* 0.12 TCGA-IB-7651-01 1 201031168 201031168 C T CACNA1S Missense_Mutation p.R986H 0.24 tolerated(0.13) benign(0.005) TCGA-IB-7651-01 1 201035357 201035357 C A CACNA1S Missense_Mutation p.K915N 0.16 deleterious(0) possibly_damaging(0.903) TCGA-IB-7651-01 1 201035407 201035407 G T CACNA1S Missense_Mutation p.L899M 0.17 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 1 201052427 201052427 C T CACNA1S Missense_Mutation p.R419H 0.14 tolerated(0.07) probably_damaging(0.973) TCGA-IB-7651-01 1 201252867 201252867 G A PKP1 Missense_Mutation p.E13K 0.26 tolerated(0.08) probably_damaging(0.994) TCGA-IB-7651-01 1 201289433 201289433 G A PKP1 Missense_Mutation p.R445H 0.09 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 201333469 201333469 C T TNNT2 Missense_Mutation p.R139H 0.15 deleterious(0) probably_damaging(0.955) TCGA-IB-7651-01 1 201337290 201337290 C A TNNT2 Nonsense_Mutation p.E45* 0.17 TCGA-IB-7651-01 1 201382201 201382201 G A TNNI1 Nonsense_Mutation p.R80* 0.16 TCGA-IB-7651-01 1 201749585 201749585 C T NAV1 Silent p.S421S 0.14 TCGA-IB-7651-01 1 201751924 201751924 G T NAV1 Nonsense_Mutation p.E762* 0.22 TCGA-IB-7651-01 1 201752962 201752962 G T NAV1 Missense_Mutation p.R929I 0.21 deleterious(0.03) benign(0.312) TCGA-IB-7651-01 1 201757711 201757711 C T NAV1 Silent p.A1037A 0.17 TCGA-IB-7651-01 1 201786359 201786359 C T NAV1 Silent p.P1828P 0.22 TCGA-IB-7651-01 1 201868668 201868668 C T LMOD1 Silent p.E491E 0.10 TCGA-IB-7651-01 1 201869208 201869208 C A LMOD1 Missense_Mutation p.E311D 0.26 benign(0.056) TCGA-IB-7651-01 1 201972481 201972481 G A RNPEP Missense_Mutation p.E515K 0.27 tolerated(0.37) benign(0.009) TCGA-IB-7651-01 1 201982144 201982144 A G ELF3 Missense_Mutation p.D223G 0.23 deleterious(0.04) possibly_damaging(0.583) TCGA-IB-7651-01 1 201984526 201984526 C A ELF3 3'UTR 0.27 TCGA-IB-7651-01 1 202128652 202128652 G T PTPN7 Intron 0.27 TCGA-IB-7651-01 1 20216981 20216981 G T OTUD3 Missense_Mutation p.D109Y 0.23 deleterious(0) probably_damaging(0.98) TCGA-IB-7651-01 1 202300940 202300940 T C UBE2T 3'UTR 0.25 TCGA-IB-7651-01 1 20248849 20248849 G T PLA2G2E Silent p.G76G 0.09 TCGA-IB-7651-01 1 202698939 202698939 T C KDM5B Missense_Mutation p.T1465A 0.25 tolerated(0.29) benign(0.038) TCGA-IB-7651-01 1 202700144 202700144 G A KDM5B Nonsense_Mutation p.Q1357* 0.17 TCGA-IB-7651-01 1 202705505 202705505 G A KDM5B Missense_Mutation p.P1034S 0.06 deleterious(0.01) probably_damaging(0.984) TCGA-IB-7651-01 1 202742404 202742404 C T KDM5B Missense_Mutation p.E140K 0.08 tolerated(0.1) possibly_damaging(0.834) TCGA-IB-7651-01 1 202843176 202843176 G T RABIF 3'Flank 0.16 TCGA-IB-7651-01 1 202912992 202912992 C A ADIPOR1 Missense_Mutation p.Q233H 0.19 deleterious(0.04) benign(0.082) TCGA-IB-7651-01 1 202915651 202915651 G A ADIPOR1 Missense_Mutation p.P116S 0.26 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 1 202934626 202934626 G T CYB5R1 Silent p.V116V 0.08 TCGA-IB-7651-01 1 20302012 20302012 G T PLA2G2A 3'UTR 0.14 TCGA-IB-7651-01 1 203033018 203033018 G A PPFIA4 Silent p.G473G 0.15 TCGA-IB-7651-01 1 203054860 203054860 G A MYOG Missense_Mutation p.S77L 0.27 deleterious(0) benign(0.14) TCGA-IB-7651-01 1 203155844 203155844 C T CHI3L1 5'UTR 0.12 TCGA-IB-7651-01 1 203192262 203192262 C A CHIT1 Splice_Site p.X202_splice 0.18 TCGA-IB-7651-01 1 203192354 203192354 T G CHIT1 Missense_Mutation p.T172P 0.23 tolerated(0.18) benign(0.004) TCGA-IB-7651-01 1 203192720 203192720 C T CHIT1 Missense_Mutation p.R128H 0.20 tolerated(0.09) benign(0.197) TCGA-IB-7651-01 1 203274801 203274801 C A BTG2 Missense_Mutation p.L23I 0.24 tolerated(0.16) benign(0.3) TCGA-IB-7651-01 1 203452334 203452334 C A PRELP Missense_Mutation p.L8I 0.16 deleterious_low_confidence(0.05) benign(0.023) TCGA-IB-7651-01 1 203743398 203743398 T G LAX1 Silent p.S262S 0.08 TCGA-IB-7651-01 1 203839004 203839004 G A SNRPE Splice_Site p.X75_splice 0.14 TCGA-IB-7651-01 1 204091060 204091060 C T SOX13 Missense_Mutation p.P270S 0.12 tolerated(0.46) benign(0.002) TCGA-IB-7651-01 1 204109165 204109165 G A ETNK2 Missense_Mutation p.A289V 0.24 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 204128549 204128549 C T REN Missense_Mutation p.V223I 0.21 tolerated(0.32) possibly_damaging(0.854) TCGA-IB-7651-01 1 204159862 204159862 C T KISS1 Missense_Mutation p.R56K 0.21 tolerated(0.82) possibly_damaging(0.567) TCGA-IB-7651-01 1 204378920 204378920 T G PPP1R15B Missense_Mutation p.E540D 0.29 tolerated(0.21) benign(0.128) TCGA-IB-7651-01 1 204394128 204394128 C T PIK3C2B Missense_Mutation p.R1586Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 204402964 204402964 A C PIK3C2B Missense_Mutation p.L1267R 0.15 deleterious(0.02) benign(0.036) TCGA-IB-7651-01 1 204403006 204403006 C T PIK3C2B Missense_Mutation p.R1253H 0.30 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 204409450 204409450 C T PIK3C2B Splice_Site p.X1084_splice 0.24 TCGA-IB-7651-01 1 204426936 204426936 C T PIK3C2B Missense_Mutation p.A545T 0.15 tolerated(0.12) benign(0.265) TCGA-IB-7651-01 1 204429749 204429749 G A PIK3C2B Missense_Mutation p.R451C 0.18 deleterious(0.01) probably_damaging(0.976) TCGA-IB-7651-01 1 204587617 204587617 G T LRRN2 Missense_Mutation p.L502M 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-IB-7651-01 1 204588892 204588892 G A LRRN2 Nonsense_Mutation p.Q77* 0.15 TCGA-IB-7651-01 1 204948168 204948168 C T NFASC Missense_Mutation p.P650L 0.24 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 204948557 204948557 C T NFASC Silent p.P682P 0.18 TCGA-IB-7651-01 1 204985538 204985538 C T NFASC Silent p.G1198G 0.09 TCGA-IB-7651-01 1 205027766 205027766 C A CNTN2 Silent p.P154P 0.21 TCGA-IB-7651-01 1 205034326 205034326 G A CNTN2 Nonsense_Mutation p.W544* 0.28 TCGA-IB-7651-01 1 205039089 205039089 C T CNTN2 Silent p.S777S 0.25 TCGA-IB-7651-01 1 205156672 205156672 C T DSTYK Silent p.T176T 0.24 TCGA-IB-7651-01 1 20517570 20517570 G T UBXN10 Missense_Mutation p.R172S 0.10 tolerated(0.28) benign(0.013) TCGA-IB-7651-01 1 205210944 205210944 C T TMCC2 Silent p.G173G 0.24 TCGA-IB-7651-01 1 205238374 205238374 C T TMCC2 Silent p.A348A 0.25 TCGA-IB-7651-01 1 205272760 205272760 G A NUAK2 Missense_Mutation p.R569W 0.19 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-IB-7651-01 1 205275355 205275355 C T NUAK2 Silent p.S217S 0.19 TCGA-IB-7651-01 1 205306592 205306592 C T KLHDC8A Missense_Mutation p.A330T 0.04 deleterious(0.02) benign(0.069) TCGA-IB-7651-01 1 205312649 205312649 C T KLHDC8A Silent p.E28E 0.27 TCGA-IB-7651-01 1 205350901 205350901 A G LEMD1 Missense_Mutation p.I144T 0.08 tolerated(0.3) benign(0.001) TCGA-IB-7651-01 1 205492385 205492385 C A CDK18 Missense_Mutation p.F30L 0.29 tolerated_low_confidence(0.66) benign(0.273) TCGA-IB-7651-01 1 205500630 205500630 C T CDK18 3'UTR 0.23 TCGA-IB-7651-01 1 205628723 205628723 C T SLC45A3 Missense_Mutation p.G434D 0.19 tolerated(0.28) benign(0.001) TCGA-IB-7651-01 1 205739556 205739556 T G RAB7L1 Missense_Mutation p.N176H 0.12 tolerated(0.07) benign(0.001) TCGA-IB-7651-01 1 205779272 205779272 G T SLC41A1 Missense_Mutation p.L100M 0.24 deleterious(0.03) probably_damaging(0.991) TCGA-IB-7651-01 1 205779550 205779550 G A SLC41A1 Missense_Mutation p.P7L 0.22 tolerated_low_confidence(0.19) benign(0.012) TCGA-IB-7651-01 1 206225109 206225109 C T AVPR1B Silent p.C223C 0.18 TCGA-IB-7651-01 1 206319192 206319192 C A CTSE Missense_Mutation p.S106Y 0.30 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 206632020 206632020 C T SRGAP2 Silent p.D767D 0.19 TCGA-IB-7651-01 1 206647703 206647703 C A IKBKE Silent p.V39V 0.17 TCGA-IB-7651-01 1 206664154 206664154 C T IKBKE Missense_Mutation p.L566F 0.12 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 1 206730965 206730965 T C RASSF5 Intron 0.05 TCGA-IB-7651-01 1 206773132 206773132 C A EIF2D Missense_Mutation p.S336I 0.18 deleterious(0) probably_damaging(0.912) TCGA-IB-7651-01 1 206821546 206821546 G A DYRK3 Missense_Mutation p.D335N 0.15 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 207087392 207087392 G T FAIM3 Missense_Mutation p.L29M 0.28 deleterious(0) probably_damaging(0.944) TCGA-IB-7651-01 1 207131926 207131926 G A FCAMR Missense_Mutation p.L557F 0.22 tolerated(0.08) benign(0.196) TCGA-IB-7651-01 1 207195513 207195513 G A C1orf116 Silent p.S532S 0.28 TCGA-IB-7651-01 1 207198256 207198256 G A C1orf116 Missense_Mutation p.P87S 0.24 tolerated(0.17) benign(0.406) TCGA-IB-7651-01 1 207222956 207222956 G A YOD1 Silent p.T152T 0.24 TCGA-IB-7651-01 1 207238421 207238421 G T PFKFB2 Missense_Mutation p.R183I 0.18 possibly_damaging(0.844) TCGA-IB-7651-01 1 207252454 207252454 G A PFKFB2 3'Flank 0.16 TCGA-IB-7651-01 1 207497997 207497997 A G CD55 Missense_Mutation p.Y127C 0.21 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 207643069 207643069 C T CR2 Missense_Mutation p.L283F 0.15 tolerated(0.25) possibly_damaging(0.859) TCGA-IB-7651-01 1 207643379 207643379 A G CR2 Missense_Mutation p.K386R 0.25 tolerated(0.06) possibly_damaging(0.779) TCGA-IB-7651-01 1 207648341 207648341 C T CR2 Silent p.S832S 0.26 TCGA-IB-7651-01 1 207697146 207697146 C T CR1 Silent p.S226S 0.19 TCGA-IB-7651-01 1 207881576 207881576 C T CR1L Missense_Mutation p.A461V 0.04 tolerated(0.66) benign(0.011) TCGA-IB-7651-01 1 207943701 207943701 T C CD46 Missense_Mutation p.Y328H 0.04 deleterious(0.01) probably_damaging(0.986) TCGA-IB-7651-01 1 207975244 207975244 C T C1orf132 RNA 0.17 TCGA-IB-7651-01 1 20810112 20810112 C A CAMK2N1 3'UTR 0.09 TCGA-IB-7651-01 1 208213029 208213029 G A PLXNA2 Silent p.G1479G 0.27 TCGA-IB-7651-01 1 208217871 208217871 C T PLXNA2 Missense_Mutation p.A1286T 0.21 deleterious(0) probably_damaging(0.971) TCGA-IB-7651-01 1 208224623 208224623 C T PLXNA2 Missense_Mutation p.E1047K 0.14 tolerated(0.11) probably_damaging(0.983) TCGA-IB-7651-01 1 208257763 208257763 G A PLXNA2 Missense_Mutation p.R754C 0.25 deleterious(0) possibly_damaging(0.556) TCGA-IB-7651-01 1 208266196 208266196 G A PLXNA2 Missense_Mutation p.R678C 0.11 deleterious(0.01) possibly_damaging(0.651) TCGA-IB-7651-01 1 208383704 208383704 C T PLXNA2 Missense_Mutation p.R431H 0.18 tolerated(0.15) probably_damaging(0.992) TCGA-IB-7651-01 1 208390732 208390732 T A PLXNA2 Missense_Mutation p.D179V 0.32 tolerated(0.16) probably_damaging(0.985) TCGA-IB-7651-01 1 209783265 209783265 G T CAMK1G Missense_Mutation p.S273I 0.17 deleterious(0.01) benign(0.058) TCGA-IB-7651-01 1 209796389 209796389 C A LAMB3 Missense_Mutation p.A832S 0.09 deleterious(0) probably_damaging(0.967) TCGA-IB-7651-01 1 20987419 20987419 C A DDOST Nonsense_Mutation p.E91* 0.08 TCGA-IB-7651-01 1 209879197 209879197 A G HSD11B1 Missense_Mutation p.K44E 0.29 deleterious(0.01) benign(0.094) TCGA-IB-7651-01 1 209935961 209935961 T G TRAF3IP3 Silent p.L149L 0.17 TCGA-IB-7651-01 1 209956186 209956186 G A C1orf74 Missense_Mutation p.P265L 0.18 deleterious(0.03) benign(0.067) TCGA-IB-7651-01 1 209956266 209956266 C A C1orf74 Missense_Mutation p.W238C 0.15 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 209956447 209956447 C T C1orf74 Missense_Mutation p.G178D 0.23 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 1 209963840 209963840 C T IRF6 Missense_Mutation p.D354N 0.24 tolerated(0.12) benign(0.081) TCGA-IB-7651-01 1 209963951 209963951 A G IRF6 Missense_Mutation p.C317R 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 209965773 209965773 C T IRF6 Splice_Site p.X170_splice 0.20 TCGA-IB-7651-01 1 209969826 209969826 C G IRF6 Missense_Mutation p.Q82H 0.24 deleterious(0.03) probably_damaging(0.973) TCGA-IB-7651-01 1 210003473 210003473 A C DIEXF Missense_Mutation p.K43T 0.25 tolerated(0.32) benign(0.013) TCGA-IB-7651-01 1 210004254 210004254 A G DIEXF Missense_Mutation p.E85G 0.17 tolerated(0.13) benign(0.021) TCGA-IB-7651-01 1 210273403 210273403 A C SYT14 Missense_Mutation p.D299A 0.24 tolerated(0.2) benign(0.002) TCGA-IB-7651-01 1 21031182 21031182 C T KIF17 Missense_Mutation p.R294Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 1 210415304 210415304 C A SERTAD4 Silent p.S231S 0.25 TCGA-IB-7651-01 1 210415325 210415325 G A SERTAD4 Silent p.P238P 0.19 TCGA-IB-7651-01 1 210415340 210415340 G A SERTAD4 Silent p.Q243Q 0.19 TCGA-IB-7651-01 1 21042020 21042020 G A KIF17 Missense_Mutation p.P115L 0.11 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 210796957 210796957 G T HHAT Missense_Mutation p.V446L 0.27 deleterious(0.01) possibly_damaging(0.721) TCGA-IB-7651-01 1 210857251 210857251 C T KCNH1 Missense_Mutation p.S781N 0.28 tolerated(0.2) benign(0) TCGA-IB-7651-01 1 210971047 210971047 C A KCNH1 Missense_Mutation p.R573L 0.15 deleterious(0.02) possibly_damaging(0.608) TCGA-IB-7651-01 1 211280608 211280608 C A KCNH1 Missense_Mutation p.S64I 0.17 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 1 21133870 21133870 G A EIF4G3 Missense_Mutation p.S1573F 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 211449613 211449613 G A RCOR3 Silent p.L123L 0.25 TCGA-IB-7651-01 1 211545602 211545602 C T TRAF5 Missense_Mutation p.T411I 0.27 tolerated(0.11) possibly_damaging(0.667) TCGA-IB-7651-01 1 211749594 211749594 T C SLC30A1 Silent p.V220V 0.21 TCGA-IB-7651-01 1 2121108 2121108 G A C1orf86 3'UTR 0.25 TCGA-IB-7651-01 1 212148514 212148514 G T INTS7 Silent p.S603S 0.24 TCGA-IB-7651-01 1 212151704 212151704 C T INTS7 Silent p.L460L 0.14 TCGA-IB-7651-01 1 212180785 212180785 G A INTS7 Missense_Mutation p.A188V 0.16 deleterious(0.01) possibly_damaging(0.537) TCGA-IB-7651-01 1 212251574 212251574 T G DTL Silent p.S365S 0.22 TCGA-IB-7651-01 1 212502503 212502504 - T PPP2R5A Frame_Shift_Ins p.C72Lfs*12 0.08 TCGA-IB-7651-01 1 212519209 212519209 G A PPP2R5A Missense_Mutation p.R213Q 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 212548540 212548540 G A TMEM206 Nonsense_Mutation p.Q357* 0.12 TCGA-IB-7651-01 1 21268212 21268212 C T EIF4G3 Missense_Mutation p.A429T 0.12 tolerated_low_confidence(0.17) benign(0.003) TCGA-IB-7651-01 1 21268446 21268446 T C EIF4G3 Missense_Mutation p.N351D 0.10 tolerated_low_confidence(0.5) benign(0.09) TCGA-IB-7651-01 1 21268661 21268661 G A EIF4G3 Missense_Mutation p.S279F 0.09 deleterious_low_confidence(0.02) benign(0.278) TCGA-IB-7651-01 1 212791502 212791502 C T ATF3 Nonsense_Mutation p.R92* 0.08 TCGA-IB-7651-01 1 212799202 212799202 C T FAM71A Missense_Mutation p.A328V 0.27 tolerated(0.08) benign(0.044) TCGA-IB-7651-01 1 213032402 213032402 C T FLVCR1 Missense_Mutation p.T203I 0.26 deleterious(0) possibly_damaging(0.566) TCGA-IB-7651-01 1 213032418 213032418 C T FLVCR1 Silent p.C208C 0.21 TCGA-IB-7651-01 1 213186643 213186643 T C ANGEL2 Silent p.G59G 0.09 TCGA-IB-7651-01 1 213415505 213415505 G T RPS6KC1 Missense_Mutation p.A896S 0.28 tolerated(0.89) benign(0) TCGA-IB-7651-01 1 214170140 214170140 C T PROX1 Missense_Mutation p.P88S 0.14 tolerated(0.42) benign(0.432) TCGA-IB-7651-01 1 214170468 214170468 C A PROX1 Missense_Mutation p.S197Y 0.13 deleterious(0.04) possibly_damaging(0.462) TCGA-IB-7651-01 1 214170732 214170732 A G PROX1 Missense_Mutation p.D285G 0.24 tolerated(0.33) benign(0.049) TCGA-IB-7651-01 1 214171148 214171148 T G PROX1 Missense_Mutation p.F424V 0.23 deleterious(0.03) probably_damaging(0.982) TCGA-IB-7651-01 1 214500997 214500997 A C SMYD2 Missense_Mutation p.N212T 0.15 deleterious(0) benign(0.316) TCGA-IB-7651-01 1 214501057 214501057 C T SMYD2 Missense_Mutation p.P232L 0.18 tolerated(0.16) probably_damaging(0.914) TCGA-IB-7651-01 1 214546067 214546067 A G PTPN14 Missense_Mutation p.V1008A 0.17 deleterious(0.02) probably_damaging(0.99) TCGA-IB-7651-01 1 214557227 214557227 C T PTPN14 Silent p.T657T 0.15 TCGA-IB-7651-01 1 214813956 214813956 G A CENPF Missense_Mutation p.E759K 0.06 benign(0.192) TCGA-IB-7651-01 1 214815450 214815450 G T CENPF Nonsense_Mutation p.E1257* 0.15 TCGA-IB-7651-01 1 214818475 214818475 G T CENPF Missense_Mutation p.Q1854H 0.18 possibly_damaging(0.642) TCGA-IB-7651-01 1 214819626 214819626 G A CENPF Missense_Mutation p.S2238N 0.15 benign(0.006) TCGA-IB-7651-01 1 21553685 21553685 C T ECE1 Missense_Mutation p.G606S 0.06 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 215775224 215775224 C A KCTD3 Missense_Mutation p.P317T 0.18 deleterious(0.04) probably_damaging(0.999) TCGA-IB-7651-01 1 215793638 215793638 G A KCTD3 Missense_Mutation p.R709K 0.25 tolerated_low_confidence(0.48) benign(0) TCGA-IB-7651-01 1 215793742 215793742 G T KCTD3 Nonsense_Mutation p.E744* 0.22 TCGA-IB-7651-01 1 215812508 215812508 G A USH2A Missense_Mutation p.S5014F 0.25 possibly_damaging(0.62) TCGA-IB-7651-01 1 215820899 215820899 G T USH2A Missense_Mutation p.A4919D 0.06 possibly_damaging(0.864) TCGA-IB-7651-01 1 215848163 215848163 G A USH2A Missense_Mutation p.L4364F 0.21 probably_damaging(0.949) TCGA-IB-7651-01 1 21585263 21585263 C T ECE1 Missense_Mutation p.A229T 0.09 tolerated(0.37) benign(0.031) TCGA-IB-7651-01 1 215960182 215960182 G A USH2A Missense_Mutation p.S3406F 0.16 possibly_damaging(0.821) TCGA-IB-7651-01 1 216011418 216011418 C T USH2A Missense_Mutation p.V3096M 0.13 benign(0.021) TCGA-IB-7651-01 1 216019173 216019173 G A USH2A Silent p.C3016C 0.12 TCGA-IB-7651-01 1 216040414 216040414 C A USH2A Missense_Mutation p.R2927I 0.21 possibly_damaging(0.61) TCGA-IB-7651-01 1 2160432 2160432 T C SKI Missense_Mutation p.L76P 0.15 tolerated(0.13) benign(0.002) TCGA-IB-7651-01 1 216062136 216062136 T A USH2A Missense_Mutation p.T2619S 0.25 probably_damaging(0.994) TCGA-IB-7651-01 1 2160910 2160910 G T SKI Missense_Mutation p.E235D 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 1 216243446 216243446 T C USH2A Missense_Mutation p.T2016A 0.15 benign(0.021) TCGA-IB-7651-01 1 216256823 216256823 T G USH2A Missense_Mutation p.N1758T 0.26 possibly_damaging(0.672) TCGA-IB-7651-01 1 216258214 216258214 T G USH2A Missense_Mutation p.I1665L 0.26 benign(0.021) TCGA-IB-7651-01 1 216270488 216270488 A G USH2A Silent p.N1565N 0.07 TCGA-IB-7651-01 1 216390747 216390747 G A USH2A Silent p.L1047L 0.25 TCGA-IB-7651-01 1 216424250 216424250 A C USH2A Missense_Mutation p.V721G 0.18 probably_damaging(0.969) TCGA-IB-7651-01 1 216465665 216465665 A C USH2A Silent p.G564G 0.07 TCGA-IB-7651-01 1 216595582 216595582 A G USH2A Missense_Mutation p.S33P 0.17 benign(0.01) TCGA-IB-7651-01 1 21771700 21771700 C T NBPF3 Nonsense_Mutation p.R41* 0.06 TCGA-IB-7651-01 1 217824443 217824443 T A SPATA17 Missense_Mutation p.L55I 0.14 deleterious(0.03) probably_damaging(0.987) TCGA-IB-7651-01 1 21797189 21797189 G A NBPF3 Silent p.E136E 0.09 TCGA-IB-7651-01 1 218036156 218036156 A C SPATA17 Missense_Mutation p.K349T 0.05 deleterious(0) possibly_damaging(0.807) TCGA-IB-7651-01 1 218520115 218520115 C T TGFB2 Silent p.C24C 0.22 TCGA-IB-7651-01 1 21889699 21889699 G A ALPL Missense_Mutation p.A132T 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 1 21928254 21928254 G A RAP1GAP Silent p.S589S 0.16 TCGA-IB-7651-01 1 21936611 21936611 A G RAP1GAP Splice_Site p.X397_splice 0.18 TCGA-IB-7651-01 1 219366593 219366593 G T LYPLAL1 Nonsense_Mutation p.G121* 0.23 TCGA-IB-7651-01 1 220091645 220091645 C T SLC30A10 Missense_Mutation p.A304T 0.16 tolerated(0.83) benign(0.012) TCGA-IB-7651-01 1 220142108 220142108 A C EPRS 3'UTR 0.15 TCGA-IB-7651-01 1 220142133 220142133 G A EPRS 3'UTR 0.23 TCGA-IB-7651-01 1 220146653 220146653 T C EPRS Missense_Mutation p.T1391A 0.04 tolerated(0.14) benign(0.05) TCGA-IB-7651-01 1 220232161 220232161 G A BPNT1 3'UTR 0.18 TCGA-IB-7651-01 1 220240718 220240718 T C BPNT1 Missense_Mutation p.T134A 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 220253166 220253166 A G BPNT1 Missense_Mutation p.L8S 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 220384297 220384297 C A RAB3GAP2 Missense_Mutation p.R145M 0.13 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 1 220439992 220439992 C T RAB3GAP2 Intron 0.19 TCGA-IB-7651-01 1 221057562 221057562 G A HLX Missense_Mutation p.R328Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 22140961 22140961 G A LDLRAD2 Silent p.S52S 0.25 TCGA-IB-7651-01 1 22162127 22162127 G T HSPG2 Silent p.I3453I 0.08 TCGA-IB-7651-01 1 221875948 221875948 C T DUSP10 Missense_Mutation p.V419I 0.07 deleterious(0.05) probably_damaging(0.911) TCGA-IB-7651-01 1 221913078 221913078 C T DUSP10 Silent p.P3P 0.08 TCGA-IB-7651-01 1 22222460 22222460 C A HSPG2 Splice_Site p.X67_splice 0.22 TCGA-IB-7651-01 1 222713615 222713615 C T HHIPL2 Missense_Mutation p.R396Q 0.25 tolerated(0.13) benign(0.159) TCGA-IB-7651-01 1 222721298 222721298 A G HHIPL2 Missense_Mutation p.I30T 0.18 tolerated(0.49) benign(0) TCGA-IB-7651-01 1 222732018 222732018 A G TAF1A Missense_Mutation p.V446A 0.16 tolerated(0.06) benign(0.037) TCGA-IB-7651-01 1 222818937 222818937 T C MIA3 Silent p.D1173D 0.33 TCGA-IB-7651-01 1 222839035 222839035 G A MIA3 3'UTR 0.18 TCGA-IB-7651-01 1 222904766 222904766 C A BROX Missense_Mutation p.P353T 0.26 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 1 223176548 223176548 C T DISP1 Silent p.H603H 0.10 TCGA-IB-7651-01 1 223178682 223178682 C A DISP1 Missense_Mutation p.L1315M 0.16 deleterious_low_confidence(0.03) possibly_damaging(0.534) TCGA-IB-7651-01 1 223284113 223284113 A C TLR5 Missense_Mutation p.I754S 0.21 deleterious(0.01) benign(0.065) TCGA-IB-7651-01 1 223285335 223285335 G T TLR5 Missense_Mutation p.L347I 0.16 deleterious(0.02) probably_damaging(0.936) TCGA-IB-7651-01 1 223408411 223408411 A C SUSD4 Intron 0.24 TCGA-IB-7651-01 1 223441990 223441990 G A SUSD4 Missense_Mutation p.A130V 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-IB-7651-01 1 223465901 223465901 C A SUSD4 Missense_Mutation p.A81S 0.29 tolerated(0.11) benign(0.01) TCGA-IB-7651-01 1 223567616 223567616 C T C1orf65 Missense_Mutation p.L267F 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-IB-7651-01 1 223983554 223983554 C T TP53BP2 Missense_Mutation p.R896H 0.20 tolerated(0.12) benign(0.005) TCGA-IB-7651-01 1 22417980 22417980 G A CDC42 Silent p.P182P 0.09 TCGA-IB-7651-01 1 224380108 224380108 T G DEGS1 Missense_Mutation p.F300L 0.32 deleterious(0) probably_damaging(0.96) TCGA-IB-7651-01 1 224380236 224380236 T G DEGS1 3'UTR 0.21 TCGA-IB-7651-01 1 224444728 224444728 G T NVL Intron 0.35 TCGA-IB-7651-01 1 22447815 22447815 G A WNT4 Silent p.I159I 0.22 TCGA-IB-7651-01 1 224599257 224599257 G A WDR26 Missense_Mutation p.P344S 0.10 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 224619244 224619244 A C WDR26 Missense_Mutation p.S188A 0.06 tolerated(0.06) benign(0.017) TCGA-IB-7651-01 1 224804789 224804789 G A CNIH3 5'UTR 0.18 TCGA-IB-7651-01 1 225591097 225591097 G A LBR Missense_Mutation p.R586C 0.25 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 226027621 226027621 C A EPHX1 Missense_Mutation p.L272I 0.09 tolerated(0.45) benign(0.014) TCGA-IB-7651-01 1 226074781 226074781 G A RP4-559A3.7 Nonsense_Mutation p.R358* 0.18 TCGA-IB-7651-01 1 226127113 226127113 C T LEFTY2 Missense_Mutation p.G229R 0.24 tolerated(0.2) benign(0.011) TCGA-IB-7651-01 1 226128787 226128787 G A LEFTY2 Silent p.P18P 0.29 TCGA-IB-7651-01 1 226253434 226253434 A G H3F3A Missense_Mutation p.Q69R 0.20 deleterious_low_confidence(0.01) benign(0.071) TCGA-IB-7651-01 1 226334286 226334286 G A ACBD3 3'UTR 0.27 TCGA-IB-7651-01 1 226347059 226347059 C A ACBD3 Missense_Mutation p.K243N 0.15 deleterious(0.02) benign(0.403) TCGA-IB-7651-01 1 226349293 226349293 G A ACBD3 Nonsense_Mutation p.R223* 0.10 TCGA-IB-7651-01 1 226413401 226413401 A G MIXL1 Missense_Mutation p.D196G 0.27 tolerated(0.16) benign(0.001) TCGA-IB-7651-01 1 226420072 226420072 A G LIN9 3'UTR 0.31 TCGA-IB-7651-01 1 226454009 226454009 G A LIN9 Missense_Mutation p.P297S 0.27 tolerated(0.37) benign(0.084) TCGA-IB-7651-01 1 226553752 226553752 A G PARP1 Missense_Mutation p.V803A 0.22 deleterious(0.04) benign(0.161) TCGA-IB-7651-01 1 226566902 226566902 G A PARP1 Silent p.I562I 0.25 TCGA-IB-7651-01 1 226573298 226573298 G A PARP1 Silent p.S306S 0.23 TCGA-IB-7651-01 1 226589969 226589969 G A PARP1 Missense_Mutation p.R78W 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 226834905 226834905 C T ITPKB Missense_Mutation p.D737N 0.07 deleterious(0.03) possibly_damaging(0.832) TCGA-IB-7651-01 1 226835049 226835049 G T ITPKB Missense_Mutation p.L689M 0.10 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 226835077 226835077 A C ITPKB Missense_Mutation p.S679R 0.20 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 1 227077790 227077790 C T PSEN2 Missense_Mutation p.A281V 0.15 deleterious(0.01) probably_damaging(0.973) TCGA-IB-7651-01 1 227083293 227083293 G A PSEN2 3'UTR 0.18 TCGA-IB-7651-01 1 227172643 227172643 G A ADCK3 Splice_Site p.X524_splice 0.24 TCGA-IB-7651-01 1 227174321 227174321 G A ADCK3 Silent p.L609L 0.12 TCGA-IB-7651-01 1 227210999 227210999 G T CDC42BPA Missense_Mutation p.T1492N 0.11 tolerated(0.49) benign(0.377) TCGA-IB-7651-01 1 227216862 227216862 G A CDC42BPA Missense_Mutation p.R1275C 0.15 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 1 227843057 227843057 G T ZNF678 Missense_Mutation p.R369I 0.24 tolerated(0.21) benign(0.175) TCGA-IB-7651-01 1 227920532 227920532 A C SNAP47 5'Flank 0.14 TCGA-IB-7651-01 1 227954674 227954674 G A SNAP47 Missense_Mutation p.G380S 0.25 tolerated(0.15) benign(0.072) TCGA-IB-7651-01 1 228109546 228109546 G T WNT9A Silent p.T257T 0.08 TCGA-IB-7651-01 1 228246984 228246984 C T WNT3A Missense_Mutation p.R293C 0.25 deleterious(0.03) probably_damaging(0.932) TCGA-IB-7651-01 1 228285130 228285130 G A ARF1 Missense_Mutation p.R79H 0.09 deleterious_low_confidence(0.05) benign(0.011) TCGA-IB-7651-01 1 22832722 22832722 C T ZBTB40 Missense_Mutation p.P450S 0.10 tolerated(0.36) unknown(0) TCGA-IB-7651-01 1 228345534 228345534 G T GJC2 Missense_Mutation p.K25N 0.17 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 1 228345635 228345635 G A GJC2 Missense_Mutation p.R59Q 0.23 tolerated(0.11) probably_damaging(0.956) TCGA-IB-7651-01 1 228363174 228363174 C T IBA57 Missense_Mutation p.A344V 0.14 tolerated(0.08) benign(0.006) TCGA-IB-7651-01 1 228363176 228363176 G A IBA57 Missense_Mutation p.A345T 0.14 deleterious(0.01) benign(0.106) TCGA-IB-7651-01 1 228399483 228399483 T C OBSCN 5'UTR 0.15 TCGA-IB-7651-01 1 228437821 228437821 C A OBSCN Silent p.R1489R 0.28 TCGA-IB-7651-01 1 228456263 228456263 G T OBSCN Missense_Mutation p.A1816S 0.26 possibly_damaging(0.727) TCGA-IB-7651-01 1 228459737 228459737 C T OBSCN Missense_Mutation p.A1934V 0.16 probably_damaging(0.995) TCGA-IB-7651-01 1 228459771 228459771 C T OBSCN Silent p.D1945D 0.18 TCGA-IB-7651-01 1 228459903 228459903 C A OBSCN Silent p.S1989S 0.19 TCGA-IB-7651-01 1 228462512 228462512 G A OBSCN Missense_Mutation p.A2350T 0.22 benign(0.366) TCGA-IB-7651-01 1 22846692 22846692 C T ZBTB40 Missense_Mutation p.S991F 0.08 deleterious(0) benign(0.265) TCGA-IB-7651-01 1 228469832 228469832 C A OBSCN Missense_Mutation p.A3228D 0.09 probably_damaging(0.994) TCGA-IB-7651-01 1 228471427 228471427 C T OBSCN Silent p.C3416C 0.22 TCGA-IB-7651-01 1 228476588 228476588 G T OBSCN Missense_Mutation p.K3875N 0.11 possibly_damaging(0.546) TCGA-IB-7651-01 1 228481232 228481232 G A OBSCN Silent p.Q4111Q 0.17 TCGA-IB-7651-01 1 228511297 228511297 C T OBSCN Silent p.L6171L 0.18 TCGA-IB-7651-01 1 228525846 228525846 G A OBSCN Splice_Site p.X6624_splice 0.25 TCGA-IB-7651-01 1 228547313 228547313 C T OBSCN Intron 0.15 TCGA-IB-7651-01 1 228547333 228547333 G A OBSCN Intron 0.14 TCGA-IB-7651-01 1 228553839 228553839 C T OBSCN Silent p.F7333F 0.17 TCGA-IB-7651-01 1 228559352 228559352 C A OBSCN Missense_Mutation p.P7915H 0.12 probably_damaging(0.912) TCGA-IB-7651-01 1 228559429 228559429 C T OBSCN Nonsense_Mutation p.R7941* 0.16 TCGA-IB-7651-01 1 228559432 228559432 C T OBSCN Silent p.L7942L 0.18 TCGA-IB-7651-01 1 228565678 228565678 C A OBSCN Silent p.I8805I 0.08 TCGA-IB-7651-01 1 228595985 228595985 G A TRIM17 Missense_Mutation p.P451S 0.27 tolerated(0.07) probably_damaging(0.936) TCGA-IB-7651-01 1 228596478 228596478 G A TRIM17 Intron 0.22 TCGA-IB-7651-01 1 228596798 228596798 C - TRIM17 Intron 0.19 TCGA-IB-7651-01 1 228646088 228646088 G T HIST3H2BB Missense_Mutation p.K86N 0.17 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-IB-7651-01 1 228646167 228646167 T C HIST3H2BB Missense_Mutation p.S113P 0.24 deleterious_low_confidence(0.02) benign(0.056) TCGA-IB-7651-01 1 2290153 2290153 G A MORN1 Silent p.S249S 0.09 TCGA-IB-7651-01 1 22903086 22903086 G A EPHA8 Missense_Mutation p.R179H 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-IB-7651-01 1 22903205 22903205 A G EPHA8 Missense_Mutation p.T219A 0.09 tolerated(0.46) probably_damaging(0.99) TCGA-IB-7651-01 1 22913039 22913039 G A EPHA8 Missense_Mutation p.S297N 0.26 deleterious(0) benign(0.154) TCGA-IB-7651-01 1 22924291 22924291 G A EPHA8 Missense_Mutation p.A685T 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 22927925 22927925 C T EPHA8 Silent p.G954G 0.22 TCGA-IB-7651-01 1 229433282 229433282 C T RAB4A Missense_Mutation p.A115V 0.05 deleterious(0.04) benign(0.199) TCGA-IB-7651-01 1 229567884 229567884 G A ACTA1 Missense_Mutation p.A222V 0.17 deleterious_low_confidence(0.02) probably_damaging(0.932) TCGA-IB-7651-01 1 229568761 229568761 C T ACTA1 Silent p.P34P 0.27 TCGA-IB-7651-01 1 22964203 22964203 A T C1QA Nonsense_Mutation p.K32* 0.14 TCGA-IB-7651-01 1 229661725 229661725 C A ABCB10 Missense_Mutation p.G622W 0.10 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 229675332 229675332 G T ABCB10 Missense_Mutation p.L404I 0.15 deleterious(0.01) benign(0.314) TCGA-IB-7651-01 1 22973781 22973781 C T C1QC Silent p.P81P 0.08 TCGA-IB-7651-01 1 22973816 22973816 C T C1QC Missense_Mutation p.P93L 0.08 tolerated(0.22) benign(0.015) TCGA-IB-7651-01 1 229738419 229738419 G A TAF5L Silent p.V165V 0.08 TCGA-IB-7651-01 1 229795022 229795022 G A URB2 Missense_Mutation p.G1518E 0.25 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 1 229795065 229795065 G A URB2 3'UTR 0.24 TCGA-IB-7651-01 1 230415072 230415072 C T GALNT2 Silent p.N528N 0.27 TCGA-IB-7651-01 1 230459084 230459084 G A PGBD5 3'UTR 0.13 TCGA-IB-7651-01 1 230472895 230472895 C A PGBD5 Missense_Mutation p.S276I 0.25 tolerated(0.1) probably_damaging(0.993) TCGA-IB-7651-01 1 230503803 230503803 C T PGBD5 Intron 0.14 TCGA-IB-7651-01 1 230805179 230805179 C T COG2 Silent p.V224V 0.23 TCGA-IB-7651-01 1 230820883 230820883 G A COG2 Silent p.R427R 0.16 TCGA-IB-7651-01 1 230838864 230838864 C T AGT 3'UTR 0.25 TCGA-IB-7651-01 1 231360220 231360220 G T C1orf131 Intron 0.16 TCGA-IB-7651-01 1 231487087 231487087 G A SPRTN Missense_Mutation p.R163Q 0.22 deleterious(0) possibly_damaging(0.751) TCGA-IB-7651-01 1 231489165 231489165 C T SPRTN 3'UTR 0.19 TCGA-IB-7651-01 1 231829955 231829955 G T DISC1 Missense_Mutation p.D151Y 0.09 tolerated(0.08) probably_damaging(0.994) TCGA-IB-7651-01 1 2318897 2318897 C T MORN1 Missense_Mutation p.G107R 0.08 deleterious(0.03) probably_damaging(0.995) TCGA-IB-7651-01 1 23191452 23191452 C T EPHB2 Silent p.S350S 0.08 TCGA-IB-7651-01 1 23222070 23222070 A G EPHB2 Missense_Mutation p.N566S 0.06 tolerated(0.46) benign(0.001) TCGA-IB-7651-01 1 23240353 23240353 G A EPHB2 3'UTR 0.09 TCGA-IB-7651-01 1 232534934 232534934 G A SIPA1L2 Missense_Mutation p.A1703V 0.27 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 1 232650124 232650124 C T SIPA1L2 Missense_Mutation p.R321H 0.17 tolerated(0.07) benign(0.017) TCGA-IB-7651-01 1 232650199 232650199 C T SIPA1L2 Missense_Mutation p.R296Q 0.23 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 1 232940995 232940995 C T MAP10 Missense_Mutation p.H76Y 0.18 benign(0.291) TCGA-IB-7651-01 1 232941505 232941505 C A MAP10 Missense_Mutation p.L246M 0.17 deleterious(0.01) probably_damaging(0.991) TCGA-IB-7651-01 1 232941539 232941539 C A MAP10 Missense_Mutation p.T257N 0.23 tolerated(0.09) possibly_damaging(0.801) TCGA-IB-7651-01 1 232943054 232943054 G T MAP10 Missense_Mutation p.S762I 0.15 deleterious(0.01) possibly_damaging(0.879) TCGA-IB-7651-01 1 233122221 233122221 G A PCNXL2 Silent p.L1953L 0.16 TCGA-IB-7651-01 1 233134991 233134991 G A PCNXL2 Silent p.C1821C 0.24 TCGA-IB-7651-01 1 233136192 233136192 G A PCNXL2 Silent p.H1729H 0.16 TCGA-IB-7651-01 1 233192981 233192981 G A PCNXL2 Missense_Mutation p.P1378S 0.21 deleterious(0.03) benign(0.128) TCGA-IB-7651-01 1 233344327 233344327 C T PCNXL2 Missense_Mutation p.V934I 0.08 tolerated(0.23) benign(0.001) TCGA-IB-7651-01 1 233482285 233482285 A C MLK4 Missense_Mutation p.K301N 0.14 deleterious(0) probably_damaging(0.956) TCGA-IB-7651-01 1 233489598 233489598 T A MLK4 Nonsense_Mutation p.Y344* 0.15 TCGA-IB-7651-01 1 233507831 233507831 C T MLK4 Missense_Mutation p.R534W 0.04 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 233508019 233508019 A G MLK4 Intron 0.20 TCGA-IB-7651-01 1 233508054 233508054 A G MLK4 Intron 0.30 TCGA-IB-7651-01 1 233514763 233514763 G A MLK4 Missense_Mutation p.D671N 0.07 tolerated(0.84) benign(0.016) TCGA-IB-7651-01 1 233514930 233514930 C T MLK4 Silent p.C726C 0.14 TCGA-IB-7651-01 1 233802529 233802529 G A KCNK1 Missense_Mutation p.V182I 0.30 tolerated(0.59) benign(0.001) TCGA-IB-7651-01 1 233802583 233802583 G A KCNK1 Missense_Mutation p.A200T 0.15 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 1 234041356 234041356 G T SLC35F3 Silent p.V45V 0.22 TCGA-IB-7651-01 1 23409708 23409708 A C KDM1A Missense_Mutation p.I828L 0.20 deleterious(0.04) possibly_damaging(0.757) TCGA-IB-7651-01 1 23419834 23419834 C T LUZP1 Silent p.S307S 0.10 TCGA-IB-7651-01 1 234529405 234529405 C T TARBP1 Silent p.P1474P 0.28 TCGA-IB-7651-01 1 234586199 234586199 C T TARBP1 Silent p.E612E 0.12 TCGA-IB-7651-01 1 234603362 234603362 A G TARBP1 Silent p.C378C 0.23 TCGA-IB-7651-01 1 234743036 234743036 G A IRF2BP2 Silent p.S537S 0.23 TCGA-IB-7651-01 1 234743289 234743289 C A IRF2BP2 Missense_Mutation p.R453M 0.16 deleterious(0.02) probably_damaging(0.962) TCGA-IB-7651-01 1 234744193 234744193 C T IRF2BP2 Missense_Mutation p.V350I 0.10 tolerated(0.19) benign(0.052) TCGA-IB-7651-01 1 23519707 23519707 C A HTR1D Missense_Mutation p.A336S 0.21 tolerated(0.7) benign(0.243) TCGA-IB-7651-01 1 235345456 235345456 A G ARID4B Silent p.D926D 0.27 TCGA-IB-7651-01 1 235359344 235359344 A G ARID4B Splice_Site p.X642_splice 0.15 TCGA-IB-7651-01 1 235359427 235359427 G A ARID4B Silent p.Y615Y 0.13 TCGA-IB-7651-01 1 235582749 235582749 C T TBCE Intron 0.27 TCGA-IB-7651-01 1 235617568 235617568 C T B3GALNT2 Missense_Mutation p.S404N 0.14 deleterious(0) benign(0.383) TCGA-IB-7651-01 1 235647766 235647766 G A B3GALNT2 Nonsense_Mutation p.R143* 0.25 TCGA-IB-7651-01 1 235715344 235715344 G T GNG4 3'UTR 0.15 TCGA-IB-7651-01 1 235826308 235826308 G A LYST Missense_Mutation p.R3780W 0.24 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 1 235909723 235909723 C T LYST Missense_Mutation p.E2629K 0.18 deleterious(0) benign(0.13) TCGA-IB-7651-01 1 235952092 235952092 C T LYST Missense_Mutation p.E1533K 0.26 tolerated(0.09) benign(0.05) TCGA-IB-7651-01 1 235955384 235955384 A G LYST Silent p.D1386D 0.17 TCGA-IB-7651-01 1 235964335 235964335 C T LYST Missense_Mutation p.E1259K 0.15 tolerated(0.05) benign(0.002) TCGA-IB-7651-01 1 235969949 235969949 C A LYST Missense_Mutation p.E829D 0.22 tolerated(0.24) benign(0.116) TCGA-IB-7651-01 1 235970023 235970023 C T LYST Missense_Mutation p.E805K 0.09 deleterious(0.01) possibly_damaging(0.664) TCGA-IB-7651-01 1 235972089 235972089 T C LYST Missense_Mutation p.I677V 0.18 tolerated(0.1) benign(0.004) TCGA-IB-7651-01 1 235973135 235973135 A C LYST Missense_Mutation p.F328C 0.30 deleterious(0) possibly_damaging(0.514) TCGA-IB-7651-01 1 236141260 236141260 G A NID1 Silent p.G1217G 0.10 TCGA-IB-7651-01 1 236157030 236157030 G A NID1 Silent p.H890H 0.27 TCGA-IB-7651-01 1 236157147 236157147 G A NID1 Silent p.H851H 0.06 TCGA-IB-7651-01 1 236205427 236205427 C A NID1 Missense_Mutation p.E306D 0.25 tolerated(0.2) benign(0.001) TCGA-IB-7651-01 1 236212087 236212087 G A NID1 Missense_Mutation p.P143L 0.28 deleterious(0.02) possibly_damaging(0.855) TCGA-IB-7651-01 1 236343188 236343188 G A GPR137B Missense_Mutation p.V233M 0.23 tolerated(0.11) possibly_damaging(0.501) TCGA-IB-7651-01 1 236347193 236347193 C A GPR137B Missense_Mutation p.P318H 0.07 deleterious(0.05) probably_damaging(0.965) TCGA-IB-7651-01 1 236371494 236371495 - A GPR137B 3'UTR 0.15 TCGA-IB-7651-01 1 236389686 236389686 C T ERO1LB Missense_Mutation p.R312Q 0.31 deleterious(0) probably_damaging(0.984) TCGA-IB-7651-01 1 236415367 236415367 C T ERO1LB Missense_Mutation p.A111T 0.23 tolerated(0.12) benign(0.232) TCGA-IB-7651-01 1 23650226 23650226 C A HNRNPR Splice_Site p.X167_splice 0.08 TCGA-IB-7651-01 1 236647572 236647572 C T EDARADD 3'Flank 0.29 TCGA-IB-7651-01 1 236706282 236706282 C T LGALS8 Missense_Mutation p.S206L 0.22 tolerated(0.44) benign(0.131) TCGA-IB-7651-01 1 236740213 236740213 A G HEATR1 Missense_Mutation p.V931A 0.05 deleterious(0.01) benign(0.144) TCGA-IB-7651-01 1 236744595 236744595 A C HEATR1 Silent p.L894L 0.28 TCGA-IB-7651-01 1 236748389 236748389 G A HEATR1 Missense_Mutation p.A726V 0.05 deleterious(0.01) benign(0.081) TCGA-IB-7651-01 1 236749565 236749565 G T HEATR1 Missense_Mutation p.P635T 0.15 deleterious(0.01) possibly_damaging(0.874) TCGA-IB-7651-01 1 236755883 236755883 G T HEATR1 Missense_Mutation p.S415Y 0.18 deleterious(0) benign(0.281) TCGA-IB-7651-01 1 236850067 236850067 C A ACTN2 Missense_Mutation p.L32M 0.21 deleterious(0) possibly_damaging(0.649) TCGA-IB-7651-01 1 236850076 236850076 G A ACTN2 Missense_Mutation p.A35T 0.10 deleterious(0.02) benign(0.151) TCGA-IB-7651-01 1 236902766 236902766 G A ACTN2 Silent p.T347T 0.15 TCGA-IB-7651-01 1 236902782 236902782 C T ACTN2 Missense_Mutation p.R353W 0.16 deleterious(0) probably_damaging(0.932) TCGA-IB-7651-01 1 236914912 236914912 G A ACTN2 Missense_Mutation p.S600N 0.15 deleterious(0) benign(0.218) TCGA-IB-7651-01 1 236925910 236925910 C T ACTN2 Silent p.S892S 0.14 TCGA-IB-7651-01 1 237013811 237013811 A G MTR Silent p.T561T 0.14 TCGA-IB-7651-01 1 237054561 237054561 C T MTR Silent p.L1046L 0.23 TCGA-IB-7651-01 1 237057675 237057675 A G MTR Missense_Mutation p.S1075G 0.26 tolerated(0.54) benign(0.017) TCGA-IB-7651-01 1 23756317 23756317 C A ASAP3 3'UTR 0.23 TCGA-IB-7651-01 1 23758362 23758362 C T ASAP3 Silent p.E791E 0.21 TCGA-IB-7651-01 1 23760792 23760792 C T ASAP3 Missense_Mutation p.D636N 0.18 tolerated(0.22) benign(0.086) TCGA-IB-7651-01 1 237729908 237729908 C A RYR2 Silent p.R1086R 0.31 TCGA-IB-7651-01 1 237754106 237754106 C A RYR2 Missense_Mutation p.A1325D 0.28 benign(0.006) TCGA-IB-7651-01 1 237777341 237777341 C T RYR2 Missense_Mutation p.S1638F 0.14 benign(0.165) TCGA-IB-7651-01 1 237780719 237780719 C T RYR2 Missense_Mutation p.A1950V 0.19 probably_damaging(0.997) TCGA-IB-7651-01 1 237796907 237796907 C A RYR2 Missense_Mutation p.N2195K 0.21 possibly_damaging(0.908) TCGA-IB-7651-01 1 237801716 237801716 C T RYR2 Silent p.G2284G 0.17 TCGA-IB-7651-01 1 237886522 237886522 G T RYR2 Missense_Mutation p.R3550I 0.25 benign(0.439) TCGA-IB-7651-01 1 237993907 237993907 G T RYR2 Missense_Mutation p.Q4911H 0.23 possibly_damaging(0.781) TCGA-IB-7651-01 1 238053923 238053923 G A ZP4 Missense_Mutation p.R5W 0.18 tolerated(0.19) benign(0.12) TCGA-IB-7651-01 1 238090390 238090390 C T RP11-193H5.1 RNA 0.24 TCGA-IB-7651-01 1 238090488 238090488 C A RP11-193H5.1 RNA 0.24 TCGA-IB-7651-01 1 238090559 238090559 G A RP11-193H5.1 RNA 0.14 TCGA-IB-7651-01 1 238090752 238090752 G A RP11-193H5.1 RNA 0.23 TCGA-IB-7651-01 1 23966239 23966239 G T MDS2 Missense_Mutation p.E72D 0.13 deleterious_low_confidence(0) benign(0.398) TCGA-IB-7651-01 1 240070910 240070910 C T CHRM3 Silent p.D53D 0.21 TCGA-IB-7651-01 1 240070919 240070919 C T CHRM3 Silent p.T56T 0.23 TCGA-IB-7651-01 1 240072469 240072469 A G CHRM3 Missense_Mutation p.Y573C 0.15 deleterious(0) probably_damaging(0.931) TCGA-IB-7651-01 1 240256573 240256573 A C FMN2 Silent p.G388G 0.18 TCGA-IB-7651-01 1 240256734 240256734 G A FMN2 Missense_Mutation p.R442K 0.23 unknown(0) TCGA-IB-7651-01 1 240656545 240656545 C T GREM2 Silent p.P77P 0.21 TCGA-IB-7651-01 1 24076437 24076437 C T TCEB3 Nonsense_Mutation p.R106* 0.11 TCGA-IB-7651-01 1 240969500 240969500 A C RGS7 Missense_Mutation p.S403R 0.24 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 1 241031913 241031913 C A RGS7 Missense_Mutation p.A195S 0.15 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 1 24121145 24121145 C A LYPLA2 Intron 0.06 TCGA-IB-7651-01 1 241676958 241676958 T C FH Missense_Mutation p.Q108R 0.26 tolerated(0.39) benign(0.001) TCGA-IB-7651-01 1 241713053 241713053 A C KMO Missense_Mutation p.K67N 0.24 tolerated(0.07) benign(0.151) TCGA-IB-7651-01 1 24172069 24172069 C A FUCA1 3'UTR 0.14 TCGA-IB-7651-01 1 241729796 241729796 A C KMO Missense_Mutation p.K231N 0.24 tolerated(0.06) benign(0.417) TCGA-IB-7651-01 1 241757917 241757917 G T OPN3 Missense_Mutation p.A341D 0.19 tolerated(0.29) benign(0.051) TCGA-IB-7651-01 1 241797861 241797861 C T CHML Missense_Mutation p.R403H 0.16 tolerated(0.06) benign(0.057) TCGA-IB-7651-01 1 241798002 241798002 C A CHML Missense_Mutation p.G356V 0.27 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 241959584 241959584 T G WDR64 Missense_Mutation p.F1025C 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.907) TCGA-IB-7651-01 1 241959665 241959665 G A WDR64 Missense_Mutation p.R1052H 0.18 tolerated(1) benign(0) TCGA-IB-7651-01 1 242024727 242024727 G A EXO1 Missense_Mutation p.A322T 0.15 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 1 242030154 242030154 G A EXO1 Missense_Mutation p.S355N 0.25 tolerated(0.21) benign(0.078) TCGA-IB-7651-01 1 242159659 242159659 C T MAP1LC3C Missense_Mutation p.A84T 0.21 tolerated(0.08) possibly_damaging(0.821) TCGA-IB-7651-01 1 242253373 242253373 G T PLD5 Missense_Mutation p.A465D 0.21 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 1 242428680 242428680 A G PLD5 Missense_Mutation p.V189A 0.13 tolerated(0.98) benign(0.001) TCGA-IB-7651-01 1 243328278 243328278 C T CEP170 Missense_Mutation p.R995H 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 1 243434319 243434319 A C SDCCAG8 Missense_Mutation p.K87T 0.23 tolerated(0.11) benign(0.331) TCGA-IB-7651-01 1 243468021 243468021 C T SDCCAG8 Silent p.L228L 0.18 TCGA-IB-7651-01 1 24383922 24383922 C T MYOM3 Missense_Mutation p.E1416K 0.26 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 1 244006483 244006483 C A AKT3 5'UTR 0.13 TCGA-IB-7651-01 1 24406591 24406591 G A MYOM3 Missense_Mutation p.T834I 0.10 deleterious(0.02) benign(0.167) TCGA-IB-7651-01 1 24419480 24419480 C T MYOM3 Silent p.S349S 0.13 TCGA-IB-7651-01 1 244218555 244218555 C T ZBTB18 Silent p.H493H 0.07 TCGA-IB-7651-01 1 244541861 244541861 G A C1orf100 Missense_Mutation p.R82Q 0.09 tolerated(0.82) benign(0.011) TCGA-IB-7651-01 1 244579342 244579342 G A ADSS Missense_Mutation p.T370M 0.27 deleterious(0.02) benign(0.019) TCGA-IB-7651-01 1 244724424 244724424 G A C1orf101 Missense_Mutation p.S495N 0.25 deleterious(0.01) probably_damaging(0.984) TCGA-IB-7651-01 1 24485614 24485614 G A IFNLR1 Silent p.A243A 0.12 TCGA-IB-7651-01 1 245027598 245027598 C T HNRNPU Silent p.S4S 0.20 TCGA-IB-7651-01 1 2452547 2452547 G A PANK4 Missense_Mutation p.R139W 0.10 deleterious(0) possibly_damaging(0.714) TCGA-IB-7651-01 1 245287507 245287507 C T RP11-290P14.2 RNA 0.18 TCGA-IB-7651-01 1 245530451 245530451 G A KIF26B Missense_Mutation p.A261T 0.09 tolerated(0.2) unknown(0) TCGA-IB-7651-01 1 245530471 245530471 A C KIF26B Missense_Mutation p.K267N 0.23 deleterious(0.01) unknown(0) TCGA-IB-7651-01 1 245849462 245849462 G T KIF26B Missense_Mutation p.K1059N 0.15 deleterious(0.04) unknown(0) TCGA-IB-7651-01 1 245849753 245849753 G A KIF26B Silent p.Q1156Q 0.18 TCGA-IB-7651-01 1 245850027 245850027 G A KIF26B Missense_Mutation p.V1248I 0.23 tolerated(0.32) unknown(0) TCGA-IB-7651-01 1 245850356 245850356 C T KIF26B Silent p.I1357I 0.21 TCGA-IB-7651-01 1 245850742 245850742 C A KIF26B Missense_Mutation p.P1486Q 0.22 tolerated(0.17) unknown(0) TCGA-IB-7651-01 1 245851582 245851582 C T KIF26B Missense_Mutation p.A1766V 0.21 tolerated(0.29) unknown(0) TCGA-IB-7651-01 1 24663190 24663190 G A GRHL3 Missense_Mutation p.S162N 0.10 tolerated(0.22) benign(0.009) TCGA-IB-7651-01 1 246704306 246704306 G A TFB2M 3'UTR 0.27 TCGA-IB-7651-01 1 246707824 246707824 G A TFB2M Missense_Mutation p.R340C 0.13 tolerated(0.1) benign(0.062) TCGA-IB-7651-01 1 246922335 246922335 G T SCCPDH Splice_Site p.X232_splice 0.04 TCGA-IB-7651-01 1 247013133 247013133 G A AHCTF1 Missense_Mutation p.R2068C 0.04 tolerated(0.05) benign(0.01) TCGA-IB-7651-01 1 247013648 247013648 A C AHCTF1 Missense_Mutation p.I1896S 0.28 tolerated(0.37) benign(0.394) TCGA-IB-7651-01 1 247040288 247040288 G T AHCTF1 Silent p.A976A 0.19 TCGA-IB-7651-01 1 247081580 247081580 T A AHCTF1 Missense_Mutation p.E40D 0.10 tolerated(0.93) benign(0.034) TCGA-IB-7651-01 1 247163304 247163304 G A ZNF695 Missense_Mutation p.R26W 0.27 deleterious(0.05) benign(0.003) TCGA-IB-7651-01 1 247320502 247320502 T G ZNF124 Missense_Mutation p.Q79P 0.30 tolerated(0.15) benign(0.053) TCGA-IB-7651-01 1 247463849 247463849 C T ZNF496 Missense_Mutation p.R579H 0.27 deleterious(0.01) probably_damaging(0.912) TCGA-IB-7651-01 1 247463872 247463872 G A ZNF496 Silent p.H571H 0.10 TCGA-IB-7651-01 1 247463988 247463988 G A ZNF496 Missense_Mutation p.R533W 0.24 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 1 247582145 247582145 C A NLRP3 Missense_Mutation p.L17M 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 247588135 247588135 G A NLRP3 Missense_Mutation p.A464T 0.07 tolerated(0.36) benign(0.028) TCGA-IB-7651-01 1 247588472 247588472 T C NLRP3 Missense_Mutation p.V576A 0.27 deleterious(0.04) probably_damaging(0.913) TCGA-IB-7651-01 1 247597464 247597464 G A NLRP3 Missense_Mutation p.S796N 0.21 tolerated(0.3) benign(0.003) TCGA-IB-7651-01 1 247614372 247614372 G T OR2B11 Missense_Mutation p.L305M 0.25 tolerated(0.12) benign(0.075) TCGA-IB-7651-01 1 247654784 247654784 T C OR2W5 RNA 0.28 TCGA-IB-7651-01 1 247654924 247654924 G T OR2W5 RNA 0.21 TCGA-IB-7651-01 1 247654999 247654999 G A OR2W5 RNA 0.26 TCGA-IB-7651-01 1 247655213 247655213 G A OR2W5 RNA 0.26 TCGA-IB-7651-01 1 247694835 247694835 G A OR2C3 3'UTR 0.27 TCGA-IB-7651-01 1 247695426 247695426 G A OR2C3 Missense_Mutation p.P130S 0.15 deleterious(0) possibly_damaging(0.782) TCGA-IB-7651-01 1 247737654 247737654 G T GCSAML Missense_Mutation p.E126D 0.25 tolerated(0.17) benign(0.103) TCGA-IB-7651-01 1 247737811 247737811 T C GCSAML 3'UTR 0.24 TCGA-IB-7651-01 1 24782746 24782746 C T NIPAL3 Silent p.T252T 0.20 TCGA-IB-7651-01 1 247835608 247835608 T C OR13G1 Missense_Mutation p.T246A 0.30 tolerated(0.13) benign(0) TCGA-IB-7651-01 1 247835702 247835702 G T OR13G1 Silent p.S214S 0.17 TCGA-IB-7651-01 1 247835916 247835916 C T OR13G1 Missense_Mutation p.S143N 0.19 deleterious(0.03) benign(0.425) TCGA-IB-7651-01 1 247836210 247836210 G T OR13G1 Missense_Mutation p.A45D 0.17 deleterious(0) possibly_damaging(0.645) TCGA-IB-7651-01 1 247902088 247902088 T C OR14K1 Missense_Mutation p.Y58H 0.24 deleterious(0.01) probably_damaging(0.987) TCGA-IB-7651-01 1 247902169 247902169 G A OR14K1 Missense_Mutation p.A85T 0.18 tolerated(1) benign(0) TCGA-IB-7651-01 1 247902511 247902511 G A OR14K1 Missense_Mutation p.A199T 0.20 tolerated(0.18) benign(0.019) TCGA-IB-7651-01 1 247902647 247902647 T C OR14K1 Missense_Mutation p.I244T 0.26 tolerated(0.34) benign(0.029) TCGA-IB-7651-01 1 247921228 247921228 C T OR1C1 Missense_Mutation p.V161I 0.25 tolerated(0.07) benign(0.002) TCGA-IB-7651-01 1 247978167 247978167 A C OR14A16 Missense_Mutation p.L289V 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-IB-7651-01 1 247978191 247978191 T C OR14A16 Missense_Mutation p.T281A 0.17 tolerated(0.26) benign(0.387) TCGA-IB-7651-01 1 248004962 248004962 G T OR11L1 Silent p.P79P 0.25 TCGA-IB-7651-01 1 248005130 248005130 C T OR11L1 Nonsense_Mutation p.W23* 0.06 TCGA-IB-7651-01 1 248031265 248031265 A C TRIM58 Missense_Mutation p.R257S 0.09 deleterious(0) possibly_damaging(0.606) TCGA-IB-7651-01 1 248059435 248059435 G A OR2W3 Missense_Mutation p.A183T 0.16 deleterious(0.02) benign(0.202) TCGA-IB-7651-01 1 248059536 248059536 C A OR2W3 Silent p.L216L 0.23 TCGA-IB-7651-01 1 248084330 248084330 G T OR2T8 Missense_Mutation p.G4V 0.20 tolerated(0.13) benign(0.183) TCGA-IB-7651-01 1 248084597 248084597 C A OR2T8 Missense_Mutation p.A93D 0.21 deleterious(0.01) possibly_damaging(0.729) TCGA-IB-7651-01 1 248112729 248112729 C T OR2L8 Silent p.D190D 0.18 TCGA-IB-7651-01 1 248112746 248112746 G A OR2L8 Missense_Mutation p.G196D 0.17 tolerated(0.09) benign(0.01) TCGA-IB-7651-01 1 248129025 248129025 G A OR2AK2 Missense_Mutation p.G131D 0.24 deleterious(0.01) possibly_damaging(0.887) TCGA-IB-7651-01 1 248202496 248202496 A G OR2L2 Silent p.S309S 0.15 TCGA-IB-7651-01 1 248308805 248308805 C A OR2M5 Missense_Mutation p.S119Y 0.16 deleterious(0) benign(0.372) TCGA-IB-7651-01 1 248308961 248308961 C A OR2M5 Missense_Mutation p.S171Y 0.13 deleterious(0.01) possibly_damaging(0.786) TCGA-IB-7651-01 1 248436839 248436839 G T OR2T33 Missense_Mutation p.A93D 0.06 deleterious(0.01) possibly_damaging(0.729) TCGA-IB-7651-01 1 248458261 248458261 A G OR2T12 Missense_Mutation p.V207A 0.25 deleterious(0.01) benign(0.168) TCGA-IB-7651-01 1 248512485 248512485 C T OR14C36 Nonsense_Mutation p.R137* 0.25 TCGA-IB-7651-01 1 248525877 248525877 C A OR2T4 Missense_Mutation p.A332D 0.15 deleterious(0) possibly_damaging(0.891) TCGA-IB-7651-01 1 248636769 248636769 T G OR2T3 Missense_Mutation p.F40V 0.09 deleterious(0.01) possibly_damaging(0.449) TCGA-IB-7651-01 1 248636985 248636985 C A OR2T3 Missense_Mutation p.L112M 0.14 tolerated(0.1) probably_damaging(0.933) TCGA-IB-7651-01 1 248685389 248685389 G A OR2G6 Missense_Mutation p.A148T 0.27 deleterious(0.05) probably_damaging(0.938) TCGA-IB-7651-01 1 248737941 248737941 A C OR2T34 Missense_Mutation p.F40V 0.09 deleterious(0.01) possibly_damaging(0.449) TCGA-IB-7651-01 1 248790026 248790026 C T OR2T11 Missense_Mutation p.R135H 0.18 tolerated(0.89) benign(0.001) TCGA-IB-7651-01 1 248813974 248813974 A G OR2T27 Missense_Mutation p.I71T 0.13 tolerated(0.4) benign(0.022) TCGA-IB-7651-01 1 249108782 249108782 G A SH3BP5L Silent p.L135L 0.06 TCGA-IB-7651-01 1 249142057 249142057 T C ZNF672 Missense_Mutation p.V195A 0.20 tolerated(1) benign(0) TCGA-IB-7651-01 1 249142226 249142226 C T ZNF672 Silent p.G251G 0.17 TCGA-IB-7651-01 1 249212090 249212090 G A PGBD2 Missense_Mutation p.R436H 0.10 tolerated(0.46) benign(0.126) TCGA-IB-7651-01 1 24993313 24993313 C T SRRM1 Missense_Mutation p.R546W 0.19 unknown(0) TCGA-IB-7651-01 1 24996768 24996768 A C SRRM1 Missense_Mutation p.K788Q 0.11 unknown(0) TCGA-IB-7651-01 1 24997983 24997983 C T SRRM1 Missense_Mutation p.A836V 0.13 unknown(0) TCGA-IB-7651-01 1 25229078 25229078 G A RUNX3 Silent p.S275S 0.09 TCGA-IB-7651-01 1 2523018 2523018 C T MMEL1 Missense_Mutation p.V740I 0.21 tolerated(0.12) benign(0.222) TCGA-IB-7651-01 1 25291031 25291031 G A RUNX3 Missense_Mutation p.P11L 0.09 tolerated_low_confidence(0.12) benign(0.009) TCGA-IB-7651-01 1 25549848 25549848 C A SYF2 Missense_Mutation p.R214M 0.22 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 1 25599174 25599174 G A RHD Missense_Mutation p.A46T 0.18 tolerated(0.57) benign(0.388) TCGA-IB-7651-01 1 25655516 25655516 C T RHD 3'UTR 0.21 TCGA-IB-7651-01 1 25688853 25688853 G T RHCE 3'UTR 0.20 TCGA-IB-7651-01 1 25701914 25701914 C T RHCE Missense_Mutation p.G360D 0.09 tolerated(0.07) benign(0.099) TCGA-IB-7651-01 1 25784913 25784913 G A TMEM57 Silent p.S228S 0.20 TCGA-IB-7651-01 1 25815742 25815742 G A TMEM57 Silent p.K525K 0.24 TCGA-IB-7651-01 1 25818054 25818054 C T TMEM57 Missense_Mutation p.R591W 0.07 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 1 25880492 25880492 G A LDLRAP1 Silent p.T56T 0.10 TCGA-IB-7651-01 1 25893459 25893459 G T LDLRAP1 Missense_Mutation p.E301D 0.07 tolerated_low_confidence(0.41) benign(0.005) TCGA-IB-7651-01 1 26149458 26149458 A T MTFR1L Intron 0.17 TCGA-IB-7651-01 1 26150190 26150190 G T MTFR1L Missense_Mutation p.R27I 0.07 tolerated(0.51) possibly_damaging(0.516) TCGA-IB-7651-01 1 26156313 26156313 T A MTFR1L Missense_Mutation p.S255R 0.08 tolerated(0.51) benign(0.326) TCGA-IB-7651-01 1 26162173 26162173 C T AUNIP Missense_Mutation p.E129K 0.20 tolerated(0.1) possibly_damaging(0.801) TCGA-IB-7651-01 1 26189287 26189287 C T PAQR7 3'UTR 0.09 TCGA-IB-7651-01 1 26189357 26189357 C T PAQR7 Missense_Mutation p.S325N 0.20 deleterious(0.01) benign(0.222) TCGA-IB-7651-01 1 26230290 26230290 C A STMN1 Nonsense_Mutation p.E10* 0.09 TCGA-IB-7651-01 1 26301000 26301000 C T PAFAH2 Silent p.Q300Q 0.13 TCGA-IB-7651-01 1 26301077 26301077 C A PAFAH2 Nonsense_Mutation p.G275* 0.08 TCGA-IB-7651-01 1 26308959 26308959 G A PAFAH2 Missense_Mutation p.R188W 0.27 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 26349755 26349755 G A EXTL1 Silent p.P206P 0.23 TCGA-IB-7651-01 1 26361822 26361822 G T EXTL1 Missense_Mutation p.S672I 0.18 tolerated(0.09) possibly_damaging(0.736) TCGA-IB-7651-01 1 26511616 26511616 G A CNKSR1 Missense_Mutation p.R416H 0.12 deleterious(0) probably_damaging(0.952) TCGA-IB-7651-01 1 26607289 26607289 C A SH3BGRL3 Missense_Mutation p.L28M 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 26694242 26694242 C T ZNF683 Missense_Mutation p.G54D 0.08 tolerated(0.26) benign(0.255) TCGA-IB-7651-01 1 26769270 26769270 G A DHDDS Missense_Mutation p.A77T 0.22 deleterious(0.03) probably_damaging(0.978) TCGA-IB-7651-01 1 27059196 27059196 G T ARID1A Missense_Mutation p.Q611H 0.16 benign(0.004) TCGA-IB-7651-01 1 27092737 27092737 C T ARID1A Nonsense_Mutation p.Q920* 0.22 TCGA-IB-7651-01 1 27101019 27101019 C T ARID1A Missense_Mutation p.A1434V 0.22 unknown(0) TCGA-IB-7651-01 1 27105787 27105787 A T ARID1A Missense_Mutation p.N1800Y 0.10 benign(0.004) TCGA-IB-7651-01 1 27332404 27332404 C T FAM46B 3'UTR 0.19 TCGA-IB-7651-01 1 27333276 27333276 A G FAM46B Missense_Mutation p.V146A 0.21 tolerated(0.77) benign(0.055) TCGA-IB-7651-01 1 27427125 27427125 G T SLC9A1 Silent p.A707A 0.11 TCGA-IB-7651-01 1 27429187 27429187 G A SLC9A1 Silent p.Y541Y 0.09 TCGA-IB-7651-01 1 27632740 27632740 C T WDTC1 Missense_Mutation p.R633C 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 27677325 27677325 G T SYTL1 Missense_Mutation p.S349I 0.10 deleterious(0) probably_damaging(0.932) TCGA-IB-7651-01 1 27677441 27677441 C T SYTL1 Missense_Mutation p.R388W 0.11 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 27697117 27697117 C T FCN3 Missense_Mutation p.A210T 0.21 tolerated(0.08) benign(0.078) TCGA-IB-7651-01 1 27721074 27721074 G A GPR3 Missense_Mutation p.A258T 0.20 tolerated(0.1) benign(0.022) TCGA-IB-7651-01 1 27734609 27734609 G A WASF2 3'UTR 0.20 TCGA-IB-7651-01 1 27741358 27741358 C T WASF2 Missense_Mutation p.V213M 0.05 tolerated(0.09) unknown(0) TCGA-IB-7651-01 1 27876902 27876902 T C AHDC1 Silent p.A575A 0.19 TCGA-IB-7651-01 1 27877908 27877908 G A AHDC1 Missense_Mutation p.A240V 0.16 tolerated_low_confidence(0.22) possibly_damaging(0.682) TCGA-IB-7651-01 1 27939553 27939553 A G FGR Missense_Mutation p.Y488H 0.08 tolerated(0.43) benign(0.19) TCGA-IB-7651-01 1 28148848 28148848 C T STX12 3'UTR 0.19 TCGA-IB-7651-01 1 28218701 28218701 G A RPA2 Silent p.D262D 0.10 TCGA-IB-7651-01 1 28282804 28282804 G T SMPDL3B Intron 0.18 TCGA-IB-7651-01 1 28293620 28293620 A G XKR8 Missense_Mutation p.Y366C 0.10 tolerated(0.18) benign(0.002) TCGA-IB-7651-01 1 28315024 28315024 A C EYA3 Intron 0.17 TCGA-IB-7651-01 1 28476387 28476387 C T PTAFR 3'UTR 0.13 TCGA-IB-7651-01 1 28607282 28607282 C T SESN2 Missense_Mutation p.A471V 0.08 deleterious(0.02) benign(0.096) TCGA-IB-7651-01 1 28807089 28807089 G A PHACTR4 Missense_Mutation p.R588Q 0.09 deleterious(0.01) possibly_damaging(0.881) TCGA-IB-7651-01 1 28857092 28857092 G A RCC1 Missense_Mutation p.C44Y 0.09 tolerated(0.94) benign(0.001) TCGA-IB-7651-01 1 28863294 28863294 C T RCC1 Missense_Mutation p.R356W 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 28891240 28891240 G T TRNAU1AP Missense_Mutation p.D102Y 0.09 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 1 29030754 29030754 G A GMEB1 Missense_Mutation p.E271K 0.20 deleterious(0.04) benign(0.1) TCGA-IB-7651-01 1 29037105 29037105 A C GMEB1 Missense_Mutation p.R324S 0.20 tolerated(0.05) benign(0.003) TCGA-IB-7651-01 1 29189517 29189517 G A OPRD1 Missense_Mutation p.V281I 0.25 tolerated(0.44) benign(0.164) TCGA-IB-7651-01 1 2938529 2938529 C A ACTRT2 Silent p.L93L 0.17 TCGA-IB-7651-01 1 29447499 29447499 C T TMEM200B Missense_Mutation p.R281Q 0.19 deleterious(0) benign(0.342) TCGA-IB-7651-01 1 29475125 29475125 G A SRSF4 Nonsense_Mutation p.R428* 0.04 TCGA-IB-7651-01 1 29508278 29508278 G A SRSF4 5'UTR 0.10 TCGA-IB-7651-01 1 29587277 29587277 G A PTPRU Missense_Mutation p.A336T 0.07 tolerated(0.33) possibly_damaging(0.665) TCGA-IB-7651-01 1 29609239 29609239 G T PTPRU Missense_Mutation p.E640D 0.12 tolerated(0.37) benign(0.047) TCGA-IB-7651-01 1 29610474 29610474 G A PTPRU Missense_Mutation p.R722H 0.12 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 31189685 31189685 C T MATN1 Missense_Mutation p.A248T 0.17 tolerated(0.48) benign(0.015) TCGA-IB-7651-01 1 31194241 31194241 C T MATN1 Intron 0.06 TCGA-IB-7651-01 1 31208047 31208047 C A LAPTM5 Missense_Mutation p.E224D 0.10 tolerated(0.61) benign(0.006) TCGA-IB-7651-01 1 31211857 31211857 C A LAPTM5 Missense_Mutation p.S147I 0.14 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 1 31230535 31230535 C T LAPTM5 Missense_Mutation p.A20T 0.18 deleterious(0.01) possibly_damaging(0.621) TCGA-IB-7651-01 1 31349524 31349524 C T SDC3 Missense_Mutation p.V249I 0.26 tolerated(0.13) unknown(0) TCGA-IB-7651-01 1 31766156 31766156 G A SNRNP40 Silent p.L61L 0.16 TCGA-IB-7651-01 1 31905859 31905859 C T SERINC2 Silent p.T362T 0.10 TCGA-IB-7651-01 1 32050933 32050933 G A TINAGL1 Missense_Mutation p.G347S 0.23 tolerated(1) benign(0.035) TCGA-IB-7651-01 1 32084938 32084938 C A HCRTR1 Missense_Mutation p.L49I 0.10 deleterious(0.01) possibly_damaging(0.749) TCGA-IB-7651-01 1 32133784 32133784 C A COL16A1 Silent p.T1095T 0.09 TCGA-IB-7651-01 1 32138370 32138370 T C COL16A1 Silent p.G977G 0.06 TCGA-IB-7651-01 1 32196611 32196611 G A BAI2 Silent p.A1390A 0.13 TCGA-IB-7651-01 1 32198193 32198193 G A BAI2 Silent p.C1215C 0.07 TCGA-IB-7651-01 1 32207538 32207538 G A BAI2 Missense_Mutation p.A483V 0.18 tolerated(0.45) benign(0.39) TCGA-IB-7651-01 1 32221720 32221720 C A BAI2 Missense_Mutation p.G240C 0.07 tolerated(0.06) benign(0.305) TCGA-IB-7651-01 1 32256723 32256723 C A SPOCD1 Missense_Mutation p.E1044D 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-IB-7651-01 1 32258902 32258902 C T SPOCD1 Missense_Mutation p.G888R 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 32262200 32262200 C T SPOCD1 Silent p.E754E 0.11 TCGA-IB-7651-01 1 32279785 32279785 C T SPOCD1 Missense_Mutation p.A384T 0.13 tolerated(0.71) benign(0.012) TCGA-IB-7651-01 1 32280525 32280525 C T SPOCD1 Missense_Mutation p.S137N 0.14 tolerated(0.15) benign(0.005) TCGA-IB-7651-01 1 32374336 32374336 G T PTP4A2 3'UTR 0.20 TCGA-IB-7651-01 1 32568053 32568053 C T TMEM39B Missense_Mutation p.R420W 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 32620216 32620216 A G KPNA6 Missense_Mutation p.N11S 0.07 tolerated(0.16) benign(0.035) TCGA-IB-7651-01 1 32636619 32636619 C A KPNA6 3'UTR 0.24 TCGA-IB-7651-01 1 32740348 32740348 G A LCK Missense_Mutation p.R39Q 0.11 tolerated(0.54) benign(0.002) TCGA-IB-7651-01 1 32842030 32842030 G A BSDC1 Missense_Mutation p.P347L 0.09 tolerated(0.1) benign(0.031) TCGA-IB-7651-01 1 3301745 3301745 C T PRDM16 Silent p.F156F 0.18 TCGA-IB-7651-01 1 33058584 33058584 C T ZBTB8A Missense_Mutation p.R18C 0.14 probably_damaging(1) TCGA-IB-7651-01 1 33147521 33147521 C T RBBP4 3'UTR 0.16 TCGA-IB-7651-01 1 33149536 33149536 T G RBBP4 3'UTR 0.20 TCGA-IB-7651-01 1 33233558 33233558 G T KIAA1522 Nonsense_Mutation p.E136* 0.05 TCGA-IB-7651-01 1 33235788 33235788 G A KIAA1522 Silent p.E336E 0.10 TCGA-IB-7651-01 1 33236217 33236217 G A KIAA1522 Silent p.R479R 0.09 TCGA-IB-7651-01 1 33412058 33412058 G T RNF19B Missense_Mutation p.A365D 0.21 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 1 33487216 33487216 C T AK2 Missense_Mutation p.R103Q 0.20 deleterious(0.01) benign(0.026) TCGA-IB-7651-01 1 33549445 33549445 G T ADC Intron 0.10 TCGA-IB-7651-01 1 33772896 33772896 C T A3GALT2 Missense_Mutation p.R165H 0.33 deleterious(0.01) benign(0.34) TCGA-IB-7651-01 1 33772924 33772924 G A A3GALT2 Missense_Mutation p.R156C 0.16 deleterious(0.01) probably_damaging(0.968) TCGA-IB-7651-01 1 33794638 33794638 G T PHC2 Missense_Mutation p.P752H 0.09 deleterious(0) probably_damaging(0.94) TCGA-IB-7651-01 1 33797020 33797020 G T PHC2 Silent p.L644L 0.10 TCGA-IB-7651-01 1 3394527 3394527 C T ARHGEF16 Missense_Mutation p.A521V 0.08 deleterious(0.05) possibly_damaging(0.515) TCGA-IB-7651-01 1 33960721 33960721 C T ZSCAN20 Missense_Mutation p.T926I 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 1 33960823 33960823 A C ZSCAN20 Missense_Mutation p.K960T 0.10 deleterious(0.01) possibly_damaging(0.608) TCGA-IB-7651-01 1 3397224 3397224 C T ARHGEF16 3'UTR 0.25 TCGA-IB-7651-01 1 34123589 34123589 G A CSMD2 Silent p.I1428I 0.21 TCGA-IB-7651-01 1 3413807 3413807 G T MEGF6 Silent p.G1157G 0.20 TCGA-IB-7651-01 1 34330387 34330387 A C HMGB4 3'UTR 0.18 TCGA-IB-7651-01 1 34663476 34663476 C T C1orf94 Missense_Mutation p.P324L 0.08 deleterious(0.01) possibly_damaging(0.733) TCGA-IB-7651-01 1 34666546 34666546 C A C1orf94 Missense_Mutation p.L395I 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.742) TCGA-IB-7651-01 1 35223537 35223537 C T GJB5 Silent p.L202L 0.21 TCGA-IB-7651-01 1 35259805 35259805 C A GJA4 5'UTR 0.19 TCGA-IB-7651-01 1 35260722 35260722 C T GJA4 Missense_Mutation p.S303F 0.09 deleterious(0.01) benign(0.131) TCGA-IB-7651-01 1 35370403 35370403 G T DLGAP3 Missense_Mutation p.D194E 0.09 tolerated(1) benign(0.001) TCGA-IB-7651-01 1 35578670 35578670 T C ZMYM1 Silent p.S413S 0.10 TCGA-IB-7651-01 1 35580389 35580389 T C ZMYM1 Silent p.F986F 0.09 TCGA-IB-7651-01 1 3564022 3564022 C T WRAP73 Missense_Mutation p.A58T 0.15 tolerated(0.16) benign(0.027) TCGA-IB-7651-01 1 35824963 35824963 C A ZMYM4 Missense_Mutation p.L175I 0.10 tolerated_low_confidence(0.7) benign(0.001) TCGA-IB-7651-01 1 35873657 35873657 A G ZMYM4 Missense_Mutation p.E1282G 0.09 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 1 35900633 35900633 C A KIAA0319L Missense_Mutation p.E1004D 0.22 tolerated(0.17) probably_damaging(0.99) TCGA-IB-7651-01 1 36026194 36026194 C T NCDN Missense_Mutation p.R148C 0.04 tolerated(0.08) benign(0.002) TCGA-IB-7651-01 1 36028103 36028103 G A NCDN Silent p.L418L 0.12 TCGA-IB-7651-01 1 36029470 36029470 C T NCDN Silent p.T571T 0.09 TCGA-IB-7651-01 1 36053933 36053933 C T TFAP2E Missense_Mutation p.P189S 0.20 tolerated(0.07) benign(0.032) TCGA-IB-7651-01 1 36208797 36208797 C T CLSPN Missense_Mutation p.E1030K 0.11 tolerated(0.07) possibly_damaging(0.458) TCGA-IB-7651-01 1 36319369 36319369 G A AGO4 3'UTR 0.35 TCGA-IB-7651-01 1 36359359 36359359 C T AGO1 Silent p.G199G 0.09 TCGA-IB-7651-01 1 36553677 36553677 C T TEKT2 Missense_Mutation p.R395C 0.19 deleterious(0) benign(0.035) TCGA-IB-7651-01 1 36558779 36558779 C A ADPRHL2 Missense_Mutation p.P295H 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-IB-7651-01 1 36563619 36563619 C T COL8A2 Missense_Mutation p.V555M 0.14 tolerated(0.22) possibly_damaging(0.659) TCGA-IB-7651-01 1 36563679 36563679 C T COL8A2 Missense_Mutation p.A535T 0.12 tolerated(0.51) benign(0.213) TCGA-IB-7651-01 1 36564029 36564029 C A COL8A2 Missense_Mutation p.G418V 0.16 deleterious(0) unknown(0) TCGA-IB-7651-01 1 36564482 36564482 C T COL8A2 Missense_Mutation p.G267E 0.11 deleterious(0) unknown(0) TCGA-IB-7651-01 1 3662564 3662564 G A TP73-AS1 RNA 0.10 TCGA-IB-7651-01 1 36640530 36640530 C T MAP7D1 Silent p.N257N 0.14 TCGA-IB-7651-01 1 36642393 36642393 G A MAP7D1 Silent p.L443L 0.10 TCGA-IB-7651-01 1 36642421 36642421 G A MAP7D1 Missense_Mutation p.A453T 0.10 benign(0.028) TCGA-IB-7651-01 1 36766592 36766592 G T THRAP3 Missense_Mutation p.E803D 0.11 tolerated(0.23) probably_damaging(0.953) TCGA-IB-7651-01 1 36788639 36788639 G A EVA1B 5'UTR 0.27 TCGA-IB-7651-01 1 3683818 3683818 A G CCDC27 Missense_Mutation p.K518E 0.11 tolerated(1) benign(0.023) TCGA-IB-7651-01 1 36921477 36921477 G T MRPS15 Missense_Mutation p.A229D 0.12 deleterious(0.01) possibly_damaging(0.747) TCGA-IB-7651-01 1 36939383 36939383 A G CSF3R Missense_Mutation p.F156S 0.23 deleterious(0.01) possibly_damaging(0.876) TCGA-IB-7651-01 1 3699296 3699296 A G LRRC47 Missense_Mutation p.Y448H 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 3703686 3703686 G A LRRC47 Silent p.G268G 0.11 TCGA-IB-7651-01 1 3731926 3731926 G A CEP104 3'UTR 0.17 TCGA-IB-7651-01 1 3750492 3750492 G A CEP104 Silent p.P531P 0.20 TCGA-IB-7651-01 1 37947216 37947216 C T ZC3H12A Missense_Mutation p.R200W 0.10 tolerated(0.05) benign(0.126) TCGA-IB-7651-01 1 37948755 37948755 C T ZC3H12A Missense_Mutation p.S448L 0.19 deleterious(0.03) possibly_damaging(0.859) TCGA-IB-7651-01 1 38003439 38003439 G A SNIP1 Silent p.Y367Y 0.20 TCGA-IB-7651-01 1 38006201 38006201 C A SNIP1 Missense_Mutation p.Q161H 0.19 tolerated(0.12) benign(0.174) TCGA-IB-7651-01 1 38042031 38042031 T G GNL2 Missense_Mutation p.K346Q 0.10 deleterious(0.03) possibly_damaging(0.79) TCGA-IB-7651-01 1 38061488 38061488 T G GNL2 5'UTR 0.16 TCGA-IB-7651-01 1 3807396 3807396 G T C1orf174 Missense_Mutation p.L119I 0.07 tolerated(0.31) benign(0.289) TCGA-IB-7651-01 1 38082189 38082189 C T RSPO1 Missense_Mutation p.D85N 0.19 deleterious(0.03) benign(0.349) TCGA-IB-7651-01 1 38082217 38082217 G A RSPO1 Silent p.C75C 0.11 TCGA-IB-7651-01 1 38168953 38168953 C T CDCA8 Missense_Mutation p.A173V 0.09 tolerated(0.08) possibly_damaging(0.625) TCGA-IB-7651-01 1 38185149 38185149 C A EPHA10 Missense_Mutation p.S898I 0.24 deleterious(0) possibly_damaging(0.594) TCGA-IB-7651-01 1 38187396 38187396 C A EPHA10 Missense_Mutation p.E694D 0.21 deleterious(0) possibly_damaging(0.631) TCGA-IB-7651-01 1 38192845 38192845 G A EPHA10 Silent p.V567V 0.06 TCGA-IB-7651-01 1 38226935 38226935 G T EPHA10 Intron 0.19 TCGA-IB-7651-01 1 38227628 38227628 C T EPHA10 Missense_Mutation p.R100H 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-IB-7651-01 1 38261354 38261354 C A MANEAL Intron 0.23 TCGA-IB-7651-01 1 38272774 38272774 G A YRDC Missense_Mutation p.P168L 0.17 tolerated(0.07) benign(0.026) TCGA-IB-7651-01 1 38287880 38287880 G T MTF1 Silent p.I560I 0.18 TCGA-IB-7651-01 1 38305726 38305726 G A MTF1 Silent p.V171V 0.18 TCGA-IB-7651-01 1 38327957 38327957 G A INPP5B 3'UTR 0.16 TCGA-IB-7651-01 1 38463501 38463501 C T FHL3 Nonsense_Mutation p.W181* 0.09 TCGA-IB-7651-01 1 38483358 38483358 A C UTP11L Missense_Mutation p.Q48H 0.13 deleterious(0.01) probably_damaging(0.948) TCGA-IB-7651-01 1 39340391 39340391 T C GJA9 Silent p.G460G 0.12 TCGA-IB-7651-01 1 39785375 39785375 G A MACF1 Missense_Mutation p.D1334N 0.11 benign(0.355) TCGA-IB-7651-01 1 39797612 39797612 T C MACF1 Intron 0.06 TCGA-IB-7651-01 1 39798740 39798740 T A MACF1 Intron 0.07 TCGA-IB-7651-01 1 39799706 39799706 G A MACF1 Intron 0.20 TCGA-IB-7651-01 1 39801495 39801495 C A MACF1 Intron 0.09 TCGA-IB-7651-01 1 39826503 39826503 C A MACF1 Missense_Mutation p.L2033M 0.12 benign(0.055) TCGA-IB-7651-01 1 39826575 39826575 C A MACF1 Missense_Mutation p.L2057M 0.11 probably_damaging(1) TCGA-IB-7651-01 1 39851413 39851413 T C MACF1 Missense_Mutation p.V2657A 0.20 benign(0.168) TCGA-IB-7651-01 1 39851459 39851459 G A MACF1 Silent p.E2672E 0.05 TCGA-IB-7651-01 1 39893757 39893757 T G MACF1 Missense_Mutation p.L3472W 0.06 probably_damaging(0.994) TCGA-IB-7651-01 1 39896528 39896528 C A MACF1 Missense_Mutation p.T3700N 0.06 possibly_damaging(0.493) TCGA-IB-7651-01 1 39904950 39904950 C A MACF1 Silent p.I4016I 0.08 TCGA-IB-7651-01 1 39910396 39910396 A G MACF1 Silent p.R4439R 0.12 TCGA-IB-7651-01 1 39926355 39926355 C T MACF1 Missense_Mutation p.R5079C 0.20 probably_damaging(0.988) TCGA-IB-7651-01 1 39950279 39950279 C T MACF1 Missense_Mutation p.P5305S 0.08 benign(0.002) TCGA-IB-7651-01 1 40011522 40011522 G T PPIEL RNA 0.11 TCGA-IB-7651-01 1 40150155 40150155 C T HPCAL4 Missense_Mutation p.G41S 0.10 deleterious(0) benign(0.39) TCGA-IB-7651-01 1 40229424 40229424 C T BMP8B Missense_Mutation p.R303Q 0.09 deleterious(0.03) probably_damaging(0.956) TCGA-IB-7651-01 1 40235611 40235611 C A OXCT2 Missense_Mutation p.Q439H 0.09 deleterious(0) possibly_damaging(0.637) TCGA-IB-7651-01 1 40309819 40309819 C A TRIT1 Silent p.L396L 0.10 TCGA-IB-7651-01 1 40702892 40702892 C A RLF Missense_Mutation p.L840I 0.19 tolerated(0.28) benign(0.007) TCGA-IB-7651-01 1 40713707 40713707 G A TMCO2 Silent p.E14E 0.22 TCGA-IB-7651-01 1 40716992 40716992 A G TMCO2 Missense_Mutation p.Y92C 0.20 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-IB-7651-01 1 40735717 40735717 C A ZMPSTE24 Missense_Mutation p.S182Y 0.22 deleterious(0.01) benign(0.017) TCGA-IB-7651-01 1 40747106 40747106 C A ZMPSTE24 Nonsense_Mutation p.Y287* 0.12 TCGA-IB-7651-01 1 40874336 40874336 G A SMAP2 Silent p.E83E 0.05 TCGA-IB-7651-01 1 40960960 40960960 C A ZFP69 Silent p.T270T 0.13 TCGA-IB-7651-01 1 40961175 40961175 T G ZFP69 Missense_Mutation p.L342R 0.09 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 1 40961257 40961257 C T ZFP69 Silent p.S369S 0.08 TCGA-IB-7651-01 1 40980896 40980896 C T EXO5 Missense_Mutation p.A227V 0.21 tolerated(0.07) possibly_damaging(0.833) TCGA-IB-7651-01 1 41107601 41107601 C T RIMS3 5'UTR 0.23 TCGA-IB-7651-01 1 41284339 41284339 A G KCNQ4 Missense_Mutation p.Y232C 0.21 tolerated(0.13) probably_damaging(0.937) TCGA-IB-7651-01 1 41461643 41461643 G A CTPS1 Missense_Mutation p.E259K 0.09 tolerated(0.18) benign(0.014) TCGA-IB-7651-01 1 41466775 41466775 G A CTPS1 Silent p.K360K 0.23 TCGA-IB-7651-01 1 41474522 41474522 A C CTPS1 Missense_Mutation p.Q502H 0.22 tolerated(0.15) benign(0.004) TCGA-IB-7651-01 1 41482929 41482929 C T SLFNL1 Missense_Mutation p.A360T 0.16 deleterious(0.04) benign(0.109) TCGA-IB-7651-01 1 41990569 41990569 G A HIVEP3 Silent p.N1740N 0.13 TCGA-IB-7651-01 1 42045931 42045931 G T HIVEP3 Missense_Mutation p.P1513H 0.23 possibly_damaging(0.503) TCGA-IB-7651-01 1 42048565 42048565 C T HIVEP3 Missense_Mutation p.G635D 0.17 probably_damaging(0.995) TCGA-IB-7651-01 1 42049369 42049369 C T HIVEP3 Missense_Mutation p.R367H 0.21 probably_damaging(0.998) TCGA-IB-7651-01 1 42744089 42744089 G T FOXJ3 Missense_Mutation p.T100N 0.10 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 42875661 42875661 C A RIMKLA Missense_Mutation p.A163D 0.19 tolerated(0.15) benign(0.333) TCGA-IB-7651-01 1 43212530 43212530 G T LEPRE1 3'UTR 0.14 TCGA-IB-7651-01 1 43213012 43213012 C A LEPRE1 Missense_Mutation p.K662N 0.12 tolerated(0.07) benign(0.033) TCGA-IB-7651-01 1 43213396 43213396 T C LEPRE1 Missense_Mutation p.T638A 0.22 deleterious(0) possibly_damaging(0.661) TCGA-IB-7651-01 1 43296571 43296571 G A ERMAP Missense_Mutation p.R73H 0.22 tolerated(0.6) possibly_damaging(0.594) TCGA-IB-7651-01 1 43394659 43394659 C T SLC2A1 Missense_Mutation p.G340S 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 43395385 43395385 C T SLC2A1 Missense_Mutation p.R249Q 0.08 tolerated(0.36) benign(0.041) TCGA-IB-7651-01 1 43396482 43396482 C A SLC2A1 Missense_Mutation p.G111C 0.11 deleterious(0.01) probably_damaging(0.983) TCGA-IB-7651-01 1 43738921 43738921 C A TMEM125 Nonsense_Mutation p.C176* 0.07 TCGA-IB-7651-01 1 43748499 43748499 C A C1orf210 Missense_Mutation p.G100V 0.07 deleterious(0.03) possibly_damaging(0.866) TCGA-IB-7651-01 1 43774659 43774659 C T TIE1 Missense_Mutation p.R349W 0.20 tolerated(0.18) possibly_damaging(0.487) TCGA-IB-7651-01 1 43777353 43777353 C T TIE1 Missense_Mutation p.P449S 0.09 deleterious(0.01) benign(0.43) TCGA-IB-7651-01 1 43779499 43779499 C A TIE1 Missense_Mutation p.L757M 0.13 tolerated(0.13) probably_damaging(0.927) TCGA-IB-7651-01 1 43853238 43853238 G A MED8 Missense_Mutation p.P69L 0.06 deleterious(0.03) probably_damaging(0.998) TCGA-IB-7651-01 1 43885853 43885853 C A SZT2 Missense_Mutation p.L374M 0.08 deleterious(0.02) possibly_damaging(0.593) TCGA-IB-7651-01 1 43890022 43890022 G A SZT2 Missense_Mutation p.R797H 0.10 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 1 43896456 43896456 C T SZT2 Silent p.C1533C 0.09 TCGA-IB-7651-01 1 43912779 43912779 C T SZT2 Nonsense_Mutation p.R3019* 0.11 TCGA-IB-7651-01 1 43917772 43917772 C A SZT2 3'UTR 0.12 TCGA-IB-7651-01 1 44056764 44056764 G A PTPRF Silent p.A357A 0.19 TCGA-IB-7651-01 1 44056913 44056913 G A PTPRF Missense_Mutation p.R407H 0.13 deleterious(0.01) benign(0.028) TCGA-IB-7651-01 1 44070974 44070974 C T PTPRF Silent p.S1083S 0.10 TCGA-IB-7651-01 1 44071037 44071037 G A PTPRF Silent p.P1104P 0.11 TCGA-IB-7651-01 1 44085236 44085236 G A PTPRF Missense_Mutation p.E1642K 0.13 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 44149434 44149434 G A KDM4A Missense_Mutation p.R605H 0.09 tolerated(0.05) probably_damaging(0.964) TCGA-IB-7651-01 1 44163605 44163605 G T KDM4A Missense_Mutation p.R921M 0.10 deleterious(0.02) benign(0.058) TCGA-IB-7651-01 1 44163674 44163674 A C KDM4A Missense_Mutation p.E944A 0.21 deleterious(0.01) possibly_damaging(0.899) TCGA-IB-7651-01 1 44595120 44595120 G T KLF17 Missense_Mutation p.Q59H 0.10 deleterious(0.02) benign(0.099) TCGA-IB-7651-01 1 44595709 44595709 G A KLF17 Missense_Mutation p.G256R 0.10 tolerated(0.43) benign(0) TCGA-IB-7651-01 1 44684367 44684367 T C DMAP1 Silent p.A220A 0.23 TCGA-IB-7651-01 1 45079892 45079892 C A RNF220 Nonsense_Mutation p.C227* 0.10 TCGA-IB-7651-01 1 45111149 45111149 C T RNF220 Silent p.S478S 0.13 TCGA-IB-7651-01 1 45253349 45253349 G A BEST4 Missense_Mutation p.A10V 0.08 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 45270982 45270982 G A PLK3 Silent p.P560P 0.10 TCGA-IB-7651-01 1 45271006 45271006 G A PLK3 Silent p.K568K 0.21 TCGA-IB-7651-01 1 45271752 45271752 C T TCTEX1D4 Missense_Mutation p.D197N 0.08 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 45292982 45292982 C A PTCH2 Splice_Site p.X791_splice 0.24 TCGA-IB-7651-01 1 45293758 45293758 G T PTCH2 Missense_Mutation p.H605Q 0.09 tolerated(0.57) benign(0.001) TCGA-IB-7651-01 1 45307689 45307689 G A PTCH2 Missense_Mutation p.A32V 0.19 deleterious(0.03) benign(0.02) TCGA-IB-7651-01 1 45470286 45470286 C A HECTD3 Nonsense_Mutation p.E710* 0.06 TCGA-IB-7651-01 1 45484081 45484081 C A ZSWIM5 3'UTR 0.11 TCGA-IB-7651-01 1 45484670 45484670 C T ZSWIM5 Missense_Mutation p.R1005H 0.23 deleterious(0.01) unknown(0) TCGA-IB-7651-01 1 45504624 45504624 G T ZSWIM5 Silent p.G626G 0.08 TCGA-IB-7651-01 1 45553598 45553598 C T ZSWIM5 Missense_Mutation p.A303T 0.10 deleterious(0.02) unknown(0) TCGA-IB-7651-01 1 45806997 45806997 G T TOE1 Missense_Mutation p.R73M 0.18 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 1 45811107 45811107 C T TESK2 Missense_Mutation p.R374H 0.08 tolerated(0.17) benign(0.001) TCGA-IB-7651-01 1 45960780 45960780 C A CCDC163P 3'Flank 0.10 TCGA-IB-7651-01 1 45965085 45965085 C T CCDC163P Missense_Mutation p.E37K 0.08 deleterious_low_confidence(0.03) possibly_damaging(0.486) TCGA-IB-7651-01 1 45977046 45977046 C A PRDX1 Missense_Mutation p.K185N 0.17 deleterious(0.01) possibly_damaging(0.605) TCGA-IB-7651-01 1 46083795 46083795 T C NASP Silent p.V783V 0.22 TCGA-IB-7651-01 1 46206618 46206618 G A IPP Nonsense_Mutation p.R227* 0.17 TCGA-IB-7651-01 1 46489643 46489643 T C MAST2 Missense_Mutation p.Y591H 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IB-7651-01 1 46497062 46497062 G T MAST2 Splice_Site p.X998_splice 0.27 TCGA-IB-7651-01 1 46509480 46509480 C T PIK3R3 Silent p.E417E 0.19 TCGA-IB-7651-01 1 46527716 46527716 C T PIK3R3 Missense_Mutation p.E217K 0.22 deleterious(0) possibly_damaging(0.88) TCGA-IB-7651-01 1 46651347 46651347 T C TSPAN1 3'UTR 0.21 TCGA-IB-7651-01 1 46656157 46656157 T C POMGNT1 Missense_Mutation p.H546R 0.09 benign(0.029) TCGA-IB-7651-01 1 46657980 46657980 C A POMGNT1 Missense_Mutation p.K471N 0.11 probably_damaging(0.995) TCGA-IB-7651-01 1 46663544 46663544 C A POMGNT1 Splice_Site 0.20 TCGA-IB-7651-01 1 46714235 46714235 T G RAD54L Missense_Mutation p.S19A 0.10 tolerated_low_confidence(0.71) benign(0) TCGA-IB-7651-01 1 46733150 46733150 C A RAD54L Missense_Mutation p.S304Y 0.22 deleterious(0.01) benign(0.428) TCGA-IB-7651-01 1 46739361 46739361 C T RAD54L Silent p.L518L 0.14 TCGA-IB-7651-01 1 46743903 46743903 C T RAD54L Silent p.I731I 0.22 TCGA-IB-7651-01 1 46827244 46827244 C A NSUN4 Missense_Mutation p.A294D 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-IB-7651-01 1 46827361 46827361 G T NSUN4 Missense_Mutation p.S333I 0.19 deleterious(0.01) possibly_damaging(0.633) TCGA-IB-7651-01 1 46827478 46827478 T C NSUN4 Missense_Mutation p.F372S 0.18 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 1 46976890 46976890 A G DMBX1 Missense_Mutation p.K206R 0.28 tolerated(0.1) benign(0.015) TCGA-IB-7651-01 1 47016857 47016857 G A KNCN Missense_Mutation p.R11C 0.12 tolerated_low_confidence(0.09) probably_damaging(0.942) TCGA-IB-7651-01 1 4715394 4715394 C T AJAP1 5'UTR 0.11 TCGA-IB-7651-01 1 47279186 47279186 G A CYP4B1 Silent p.K176K 0.10 TCGA-IB-7651-01 1 47279222 47279222 G A CYP4B1 Silent p.A188A 0.18 TCGA-IB-7651-01 1 47325458 47325458 C A CYP4Z2P Intron 0.20 TCGA-IB-7651-01 1 47348859 47348859 C T CYP4Z2P RNA 0.18 TCGA-IB-7651-01 1 47495763 47495763 C T CYP4X1 Silent p.I93I 0.11 TCGA-IB-7651-01 1 47533229 47533229 T G CYP4Z1 Missense_Mutation p.S23A 0.10 tolerated(1) benign(0.277) TCGA-IB-7651-01 1 47610579 47610579 C T CYP4A22 Missense_Mutation p.P387S 0.25 deleterious(0.02) benign(0.362) TCGA-IB-7651-01 1 47685563 47685563 C T TAL1 Silent p.A275A 0.24 TCGA-IB-7651-01 1 4772030 4772030 C A AJAP1 Missense_Mutation p.L34I 0.10 deleterious(0.01) possibly_damaging(0.899) TCGA-IB-7651-01 1 4772744 4772744 C A AJAP1 Missense_Mutation p.L272M 0.09 tolerated(0.15) possibly_damaging(0.793) TCGA-IB-7651-01 1 47746463 47746463 G T STIL Missense_Mutation p.S556Y 0.23 deleterious(0.02) probably_damaging(0.973) TCGA-IB-7651-01 1 47753293 47753293 G A STIL Silent p.L355L 0.17 TCGA-IB-7651-01 1 47759187 47759187 C A STIL Missense_Mutation p.S272I 0.23 deleterious(0) possibly_damaging(0.894) TCGA-IB-7651-01 1 47904305 47904305 G T FOXD2 Missense_Mutation p.E166D 0.12 tolerated(0.11) benign(0.444) TCGA-IB-7651-01 1 48694634 48694634 A C SLC5A9 Intron 0.10 TCGA-IB-7651-01 1 48694760 48694760 G A SLC5A9 Intron 0.11 TCGA-IB-7651-01 1 48695003 48695003 G A SLC5A9 Missense_Mutation p.V151I 0.09 tolerated(0.13) benign(0.127) TCGA-IB-7651-01 1 48705156 48705156 G A SLC5A9 Missense_Mutation p.A567T 0.11 tolerated(0.29) benign(0.009) TCGA-IB-7651-01 1 48713336 48713336 G A SLC5A9 3'UTR 0.17 TCGA-IB-7651-01 1 50663102 50663102 C A ELAVL4 Missense_Mutation p.L263M 0.10 tolerated(0.12) possibly_damaging(0.8) TCGA-IB-7651-01 1 50884924 50884924 C T DMRTA2 Missense_Mutation p.E348K 0.15 deleterious(0) benign(0.244) TCGA-IB-7651-01 1 50885223 50885223 G T DMRTA2 Missense_Mutation p.S248Y 0.13 tolerated(1) benign(0.193) TCGA-IB-7651-01 1 50885340 50885340 G A DMRTA2 Missense_Mutation p.P209L 0.18 tolerated(0.1) probably_damaging(0.913) TCGA-IB-7651-01 1 50941256 50941256 G A FAF1 Silent p.G583G 0.10 TCGA-IB-7651-01 1 51736946 51736946 C T RNF11 Silent p.C139C 0.14 TCGA-IB-7651-01 1 51913785 51913785 G A EPS15 Missense_Mutation p.A195V 0.11 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 52231644 52231644 G A OSBPL9 Missense_Mutation p.R320H 0.09 tolerated(0.26) benign(0.001) TCGA-IB-7651-01 1 52237761 52237761 G A OSBPL9 Missense_Mutation p.V330I 0.22 tolerated(0.3) benign(0.008) TCGA-IB-7651-01 1 52254946 52254946 T G NRD1 Missense_Mutation p.T1208P 0.20 tolerated(0.09) benign(0.005) TCGA-IB-7651-01 1 52289401 52289401 C A NRD1 Missense_Mutation p.R433I 0.08 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 1 52299774 52299774 C A NRD1 Missense_Mutation p.G329C 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 52302111 52302111 C A NRD1 Splice_Site p.X255_splice 0.15 TCGA-IB-7651-01 1 52499330 52499330 A G KTI12 Missense_Mutation p.V35A 0.08 deleterious(0) probably_damaging(0.928) TCGA-IB-7651-01 1 52703719 52703719 G T ZFYVE9 Missense_Mutation p.E210D 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.493) TCGA-IB-7651-01 1 52703750 52703750 A C ZFYVE9 Missense_Mutation p.T221P 0.11 tolerated_low_confidence(0.14) benign(0) TCGA-IB-7651-01 1 52824024 52824024 C T CC2D1B Silent p.P480P 0.08 TCGA-IB-7651-01 1 52824952 52824952 C T CC2D1B Missense_Mutation p.V366M 0.25 deleterious(0.02) benign(0.426) TCGA-IB-7651-01 1 52896778 52896778 G A ZCCHC11 Missense_Mutation p.P1540S 0.20 tolerated_low_confidence(0.05) benign(0.028) TCGA-IB-7651-01 1 52941046 52941046 T C ZCCHC11 Missense_Mutation p.K729E 0.22 deleterious(0.04) possibly_damaging(0.686) TCGA-IB-7651-01 1 52991459 52991459 C T ZCCHC11 Missense_Mutation p.S165N 0.11 deleterious_low_confidence(0.05) benign(0.004) TCGA-IB-7651-01 1 53108559 53108559 C T FAM159A Silent p.S69S 0.21 TCGA-IB-7651-01 1 53122577 53122577 C T FAM159A Silent p.S146S 0.22 TCGA-IB-7651-01 1 53237304 53237304 C T ZYG11B Missense_Mutation p.S270F 0.22 deleterious(0) possibly_damaging(0.9) TCGA-IB-7651-01 1 53262444 53262444 C T ZYG11B Silent p.L491L 0.22 TCGA-IB-7651-01 1 53370467 53370467 G A ECHDC2 Silent p.L185L 0.11 TCGA-IB-7651-01 1 53443951 53443951 G A SCP2 Missense_Mutation p.G246D 0.09 tolerated(0.13) benign(0.004) TCGA-IB-7651-01 1 53459194 53459194 C A SCP2 Intron 0.18 TCGA-IB-7651-01 1 53608004 53608004 G A SLC1A7 Missense_Mutation p.R40W 0.18 tolerated(0.16) possibly_damaging(0.766) TCGA-IB-7651-01 1 53676305 53676305 C T CPT2 Missense_Mutation p.S320L 0.11 deleterious(0) probably_damaging(0.981) TCGA-IB-7651-01 1 53716509 53716509 A G LRP8 Silent p.S843S 0.09 TCGA-IB-7651-01 1 53746293 53746293 G A LRP8 Silent p.C154C 0.18 TCGA-IB-7651-01 1 53975654 53975654 G A GLIS1 Silent p.L469L 0.18 TCGA-IB-7651-01 1 54254859 54254859 G A NDC1 Missense_Mutation p.A549V 0.20 tolerated(0.07) probably_damaging(0.936) TCGA-IB-7651-01 1 54291547 54291547 C A NDC1 Missense_Mutation p.G173V 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 54301170 54301170 T G NDC1 Intron 0.21 TCGA-IB-7651-01 1 54344385 54344385 C T YIPF1 Missense_Mutation p.G69E 0.09 tolerated(0.44) benign(0.295) TCGA-IB-7651-01 1 54387388 54387388 T G HSPB11 Missense_Mutation p.D124A 0.10 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 54418090 54418090 A C LRRC42 Missense_Mutation p.K140Q 0.09 tolerated(0.06) probably_damaging(0.927) TCGA-IB-7651-01 1 54433606 54433606 C A LRRC42 Silent p.S427S 0.10 TCGA-IB-7651-01 1 54474776 54474776 C T LDLRAD1 Missense_Mutation p.G166E 0.09 tolerated(1) benign(0.244) TCGA-IB-7651-01 1 54518711 54518711 C T TMEM59 Missense_Mutation p.A51T 0.18 tolerated(0.78) benign(0.01) TCGA-IB-7651-01 1 54606931 54606931 G A CDCP2 Silent p.D201D 0.19 TCGA-IB-7651-01 1 54640277 54640277 G A CYB5RL 3'UTR 0.19 TCGA-IB-7651-01 1 54670848 54670848 G A MRPL37 Silent p.E168E 0.21 TCGA-IB-7651-01 1 55075382 55075382 C T FAM151A Nonsense_Mutation p.W439* 0.18 TCGA-IB-7651-01 1 55080452 55080452 C T FAM151A Missense_Mutation p.V166I 0.26 tolerated(0.73) benign(0.015) TCGA-IB-7651-01 1 55136215 55136215 C T MROH7 Missense_Mutation p.R479C 0.15 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 1 55144999 55144999 C A MROH7 Missense_Mutation p.L705M 0.05 deleterious(0.02) probably_damaging(1) TCGA-IB-7651-01 1 55194081 55194081 T C TTC4 Silent p.N219N 0.13 TCGA-IB-7651-01 1 55224511 55224511 C A PARS2 Missense_Mutation p.E108D 0.23 deleterious(0.02) probably_damaging(0.992) TCGA-IB-7651-01 1 55319794 55319794 G A DHCR24 Silent p.Y378Y 0.21 TCGA-IB-7651-01 1 55474333 55474333 A G BSND 3'UTR 0.22 TCGA-IB-7651-01 1 55523714 55523714 G A PCSK9 Missense_Mutation p.A396T 0.08 deleterious(0.04) benign(0.314) TCGA-IB-7651-01 1 55563334 55563334 G A USP24 Silent p.H1884H 0.10 TCGA-IB-7651-01 1 55569592 55569592 G T USP24 Missense_Mutation p.S1661Y 0.18 tolerated(0.09) benign(0.169) TCGA-IB-7651-01 1 55589226 55589226 C T USP24 Silent p.A1390A 0.22 TCGA-IB-7651-01 1 55620367 55620367 G T USP24 Missense_Mutation p.H511N 0.08 deleterious(0.01) probably_damaging(0.937) TCGA-IB-7651-01 1 56977739 56977739 T C PPAP2B Missense_Mutation p.Y240C 0.10 deleterious(0) possibly_damaging(0.873) TCGA-IB-7651-01 1 56990067 56990067 G A PPAP2B Missense_Mutation p.R153C 0.11 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 57170116 57170116 C T PRKAA2 Nonsense_Mutation p.R421* 0.20 TCGA-IB-7651-01 1 57340669 57340669 C T C8A Silent p.I73I 0.09 TCGA-IB-7651-01 1 57378188 57378188 G A C8A Missense_Mutation p.R498Q 0.21 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 1 57383318 57383318 T G C8A Missense_Mutation p.C562G 0.07 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 59004545 59004545 C T OMA1 Missense_Mutation p.R141Q 0.10 tolerated(0.3) benign(0.016) TCGA-IB-7651-01 1 5924003 5924003 G T NPHP4 Missense_Mutation p.H1363N 0.15 tolerated(0.34) benign(0.34) TCGA-IB-7651-01 1 5926444 5926444 G A NPHP4 Silent p.V1211V 0.15 TCGA-IB-7651-01 1 5935119 5935119 C A NPHP4 Missense_Mutation p.Q953H 0.20 deleterious(0.05) possibly_damaging(0.878) TCGA-IB-7651-01 1 5964847 5964847 C T NPHP4 Missense_Mutation p.R658Q 0.09 tolerated(0.38) benign(0.009) TCGA-IB-7651-01 1 5965437 5965437 C T NPHP4 Missense_Mutation p.E624K 0.24 deleterious(0.02) benign(0.06) TCGA-IB-7651-01 1 60139717 60139717 C T FGGY Missense_Mutation p.P499L 0.13 deleterious(0.01) probably_damaging(0.991) TCGA-IB-7651-01 1 60330860 60330860 G T HOOK1 Nonsense_Mutation p.E563* 0.11 TCGA-IB-7651-01 1 60377919 60377919 C A CYP2J2 Missense_Mutation p.R146S 0.09 deleterious(0) possibly_damaging(0.782) TCGA-IB-7651-01 1 60377927 60377927 C T CYP2J2 Missense_Mutation p.A144T 0.09 tolerated(1) benign(0.001) TCGA-IB-7651-01 1 6046333 6046333 C T NPHP4 Missense_Mutation p.R6K 0.13 tolerated(0.22) benign(0.012) TCGA-IB-7651-01 1 6155597 6155597 C T KCNAB2 Silent p.G287G 0.09 TCGA-IB-7651-01 1 6166503 6166503 C T CHD5 Missense_Mutation p.G1937R 0.14 deleterious_low_confidence(0.03) benign(0.009) TCGA-IB-7651-01 1 6169927 6169927 C T CHD5 Missense_Mutation p.A1836T 0.09 deleterious(0.01) probably_damaging(0.928) TCGA-IB-7651-01 1 6181169 6181169 C T CHD5 Silent p.P1636P 0.09 TCGA-IB-7651-01 1 6184720 6184720 C A CHD5 Missense_Mutation p.A1466S 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-IB-7651-01 1 6190296 6190296 C T CHD5 Missense_Mutation p.D1119N 0.09 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 1 6202222 6202222 G A CHD5 Missense_Mutation p.A801V 0.10 deleterious(0.03) possibly_damaging(0.708) TCGA-IB-7651-01 1 6211106 6211106 C T CHD5 Missense_Mutation p.R327H 0.09 deleterious(0) benign(0.004) TCGA-IB-7651-01 1 6214959 6214959 C T CHD5 Splice_Site p.X169_splice 0.13 TCGA-IB-7651-01 1 6215750 6215750 C A CHD5 Missense_Mutation p.A139S 0.17 tolerated(0.41) benign(0.045) TCGA-IB-7651-01 1 62366960 62366960 G A INADL Silent p.E1070E 0.11 TCGA-IB-7651-01 1 62739298 62739298 C A KANK4 Missense_Mutation p.S493I 0.22 deleterious(0.03) possibly_damaging(0.703) TCGA-IB-7651-01 1 6279551 6279551 T G RNF207 3'UTR 0.09 TCGA-IB-7651-01 1 62941521 62941521 G A DOCK7 Nonsense_Mutation p.R1909* 0.10 TCGA-IB-7651-01 1 62953075 62953075 G T DOCK7 Silent p.G1803G 0.06 TCGA-IB-7651-01 1 6305573 6305573 C T HES3 3'UTR 0.09 TCGA-IB-7651-01 1 63063219 63063219 A T ANGPTL3 5'UTR 0.10 TCGA-IB-7651-01 1 63069843 63069843 T G ANGPTL3 Missense_Mutation p.L379V 0.21 tolerated(0.19) possibly_damaging(0.585) TCGA-IB-7651-01 1 63113959 63113959 C T DOCK7 Missense_Mutation p.D184N 0.21 tolerated(0.09) benign(0.049) TCGA-IB-7651-01 1 6313786 6313786 G A GPR153 Missense_Mutation p.P260S 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 6324691 6324691 G A ACOT7 Missense_Mutation p.A370V 0.13 deleterious(0.01) benign(0.268) TCGA-IB-7651-01 1 63789347 63789347 G A FOXD3 Silent p.P206P 0.20 TCGA-IB-7651-01 1 63955760 63955760 A G ITGB3BP Missense_Mutation p.S99P 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-IB-7651-01 1 64088984 64088984 C A PGM1 5'UTR 0.08 TCGA-IB-7651-01 1 64120045 64120045 C T PGM1 Nonsense_Mutation p.R521* 0.23 TCGA-IB-7651-01 1 64475030 64475030 T G ROR1 Missense_Mutation p.S49A 0.21 tolerated_low_confidence(0.43) benign(0.011) TCGA-IB-7651-01 1 64676474 64676474 G T UBE2U Missense_Mutation p.E97D 0.16 tolerated(1) benign(0) TCGA-IB-7651-01 1 6479365 6479365 G T HES2 Silent p.V59V 0.09 TCGA-IB-7651-01 1 65129424 65129424 T G CACHD1 Nonsense_Mutation p.Y615* 0.11 TCGA-IB-7651-01 1 65137258 65137258 C A CACHD1 Missense_Mutation p.S749Y 0.10 deleterious(0.04) benign(0.382) TCGA-IB-7651-01 1 65268680 65268680 G T RAVER2 Missense_Mutation p.S376I 0.08 deleterious(0) possibly_damaging(0.745) TCGA-IB-7651-01 1 65332855 65332855 G A JAK1 Silent p.S228S 0.19 TCGA-IB-7651-01 1 65855014 65855014 G A DNAJC6 Silent p.Q423Q 0.11 TCGA-IB-7651-01 1 65855062 65855062 C T DNAJC6 Silent p.C439C 0.18 TCGA-IB-7651-01 1 6592123 6592123 T C NOL9 Missense_Mutation p.I518V 0.11 tolerated(0.58) benign(0.042) TCGA-IB-7651-01 1 6639462 6639462 G A TAS1R1 Missense_Mutation p.V782I 0.10 tolerated(0.79) benign(0.014) TCGA-IB-7651-01 1 6692877 6692877 G T THAP3 Missense_Mutation p.A154S 0.09 tolerated(0.28) benign(0.293) TCGA-IB-7651-01 1 6693075 6693075 C A THAP3 Missense_Mutation p.L220I 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-IB-7651-01 1 67155901 67155901 C A SGIP1 Missense_Mutation p.S491Y 0.10 deleterious(0) probably_damaging(0.962) TCGA-IB-7651-01 1 67236111 67236111 G A TCTEX1D1 Missense_Mutation p.R54H 0.23 tolerated(0.99) benign(0.001) TCGA-IB-7651-01 1 67299780 67299780 T C WDR78 Silent p.E595E 0.21 TCGA-IB-7651-01 1 67301382 67301382 C T WDR78 Missense_Mutation p.V554I 0.22 deleterious(0.02) benign(0.173) TCGA-IB-7651-01 1 67306218 67306218 C T WDR78 Nonsense_Mutation p.W476* 0.16 TCGA-IB-7651-01 1 67558913 67558913 T G C1orf141 Missense_Mutation p.K326N 0.11 deleterious(0.03) benign(0.004) TCGA-IB-7651-01 1 67559028 67559028 G A C1orf141 Missense_Mutation p.A288V 0.10 tolerated(1) benign(0) TCGA-IB-7651-01 1 67705865 67705865 A G IL23R Missense_Mutation p.N350S 0.08 tolerated(0.07) possibly_damaging(0.801) TCGA-IB-7651-01 1 67861855 67861855 C T IL12RB2 3'UTR 0.10 TCGA-IB-7651-01 1 68153493 68153493 C T GADD45A 3'UTR 0.06 TCGA-IB-7651-01 1 68954087 68954087 G A DEPDC1 Missense_Mutation p.R231C 0.07 deleterious(0) possibly_damaging(0.677) TCGA-IB-7651-01 1 70226019 70226019 C T LRRC7 Silent p.F44F 0.10 TCGA-IB-7651-01 1 70300475 70300475 C A LRRC7 Silent p.G133G 0.10 TCGA-IB-7651-01 1 70486761 70486761 C T LRRC7 Silent p.A460A 0.21 TCGA-IB-7651-01 1 70503819 70503819 C T LRRC7 Missense_Mutation p.P733L 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IB-7651-01 1 70504112 70504112 A G LRRC7 Missense_Mutation p.T831A 0.11 tolerated_low_confidence(0.13) benign(0.156) TCGA-IB-7651-01 1 70587574 70587574 T - LRRC7 3'UTR 0.14 TCGA-IB-7651-01 1 70697883 70697883 C A SRSF11 Intron 0.24 TCGA-IB-7651-01 1 70710389 70710389 C T SRSF11 Missense_Mutation p.R275W 0.11 deleterious(0) unknown(0) TCGA-IB-7651-01 1 70742526 70742526 G A ANKRD13C Missense_Mutation p.P406L 0.16 tolerated(0.05) benign(0.025) TCGA-IB-7651-01 1 70832204 70832204 C T HHLA3 Nonsense_Mutation p.R80* 0.10 TCGA-IB-7651-01 1 70877081 70877081 C T CTH 5'UTR 0.10 TCGA-IB-7651-01 1 71512538 71512538 C T PTGER3 Silent p.A241A 0.09 TCGA-IB-7651-01 1 71536592 71536592 G A ZRANB2 Nonsense_Mutation p.R201* 0.10 TCGA-IB-7651-01 1 72241933 72241933 C T NEGR1 Missense_Mutation p.G153R 0.13 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 74648414 74648414 G A LRRIQ3 Silent p.L127L 0.09 TCGA-IB-7651-01 1 74649258 74649258 G A LRRIQ3 Silent p.G37G 0.17 TCGA-IB-7651-01 1 74665359 74665359 G A FPGT-TNNI3K Missense_Mutation p.A45T 0.21 tolerated_low_confidence(0.07) benign(0.007) TCGA-IB-7651-01 1 74834768 74834768 G T FPGT-TNNI3K Nonsense_Mutation p.E576* 0.25 TCGA-IB-7651-01 1 75036989 75036989 C A C1orf173 Nonsense_Mutation p.G1469* 0.18 TCGA-IB-7651-01 1 75037224 75037224 C A C1orf173 Missense_Mutation p.Q1390H 0.17 tolerated(0.14) benign(0.179) TCGA-IB-7651-01 1 75038471 75038471 G A C1orf173 Missense_Mutation p.L975F 0.22 tolerated(0.07) benign(0.221) TCGA-IB-7651-01 1 75078406 75078406 C A C1orf173 Missense_Mutation p.S363I 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 75204373 75204373 G A TYW3 Splice_Site p.X86_splice 0.16 TCGA-IB-7651-01 1 75622644 75622644 C T LHX8 Missense_Mutation p.P293S 0.19 tolerated(0.2) benign(0.09) TCGA-IB-7651-01 1 75683558 75683558 A G SLC44A5 Silent p.R539R 0.15 TCGA-IB-7651-01 1 75683626 75683626 C T SLC44A5 Missense_Mutation p.A517T 0.19 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 1 75688057 75688057 C A SLC44A5 Missense_Mutation p.K358N 0.13 deleterious(0.01) probably_damaging(0.948) TCGA-IB-7651-01 1 75704231 75704231 G A SLC44A5 Missense_Mutation p.T208I 0.19 tolerated(0.26) benign(0.003) TCGA-IB-7651-01 1 76262729 76262729 C T MSH4 Missense_Mutation p.S20L 0.07 tolerated_low_confidence(0.1) benign(0) TCGA-IB-7651-01 1 76343977 76343977 A G MSH4 Missense_Mutation p.Y505C 0.13 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 1 76779638 76779638 G A ST6GALNAC3 Missense_Mutation p.R56Q 0.07 benign(0.004) TCGA-IB-7651-01 1 7700507 7700507 G T CAMTA1 Missense_Mutation p.E186D 0.08 tolerated(0.51) possibly_damaging(0.509) TCGA-IB-7651-01 1 7724340 7724340 G A CAMTA1 Missense_Mutation p.S578N 0.11 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-IB-7651-01 1 7724600 7724600 C T CAMTA1 Missense_Mutation p.R665W 0.08 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-IB-7651-01 1 7737765 7737765 C A CAMTA1 Silent p.S962S 0.11 TCGA-IB-7651-01 1 77779529 77779529 C A AK5 Intron 0.12 TCGA-IB-7651-01 1 77779572 77779572 T C AK5 Intron 0.29 TCGA-IB-7651-01 1 78031830 78031830 G A ZZZ3 Missense_Mutation p.R835W 0.20 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 1 78034018 78034018 T G ZZZ3 Missense_Mutation p.K822T 0.22 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 1 78046696 78046696 G T ZZZ3 Missense_Mutation p.T656N 0.07 deleterious(0) probably_damaging(0.96) TCGA-IB-7651-01 1 78097537 78097537 T G ZZZ3 Missense_Mutation p.K501N 0.21 deleterious(0.01) benign(0.245) TCGA-IB-7651-01 1 7811265 7811265 C T CAMTA1 Missense_Mutation p.L1566F 0.18 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 1 78167123 78167123 C A USP33 Missense_Mutation p.A845S 0.08 tolerated(1) benign(0.033) TCGA-IB-7651-01 1 78201795 78201795 C T USP33 Missense_Mutation p.V165I 0.19 tolerated(0.05) benign(0.154) TCGA-IB-7651-01 1 78383276 78383276 T C NEXN Missense_Mutation p.V18A 0.22 deleterious(0) benign(0.174) TCGA-IB-7651-01 1 78392549 78392549 G A NEXN Missense_Mutation p.R279H 0.12 deleterious(0) probably_damaging(0.931) TCGA-IB-7651-01 1 78546358 78546358 G A GIPC2 Splice_Site p.X81_splice 0.08 TCGA-IB-7651-01 1 78585184 78585184 G A GIPC2 Splice_Site p.X238_splice 0.10 TCGA-IB-7651-01 1 7863170 7863170 G A PER3 Silent p.L311L 0.11 TCGA-IB-7651-01 1 79002130 79002130 C A PTGFR Missense_Mutation p.L280M 0.08 tolerated(0.19) benign(0.007) TCGA-IB-7651-01 1 79002385 79002385 G A PTGFR 3'UTR 0.11 TCGA-IB-7651-01 1 79094664 79094664 G T IFI44L Missense_Mutation p.K169N 0.09 tolerated(0.32) benign(0.028) TCGA-IB-7651-01 1 79102805 79102805 T A IFI44L Missense_Mutation p.V322D 0.23 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 79356886 79356886 A G ELTD1 Missense_Mutation p.Y676H 0.14 tolerated(0.47) possibly_damaging(0.882) TCGA-IB-7651-01 1 79403918 79403918 C T ELTD1 Missense_Mutation p.R148K 0.12 tolerated(0.78) benign(0.006) TCGA-IB-7651-01 1 8073211 8073211 C T ERRFI1 3'UTR 0.10 TCGA-IB-7651-01 1 8074543 8074543 C A ERRFI1 Intron 0.15 TCGA-IB-7651-01 1 82409048 82409048 G A LPHN2 Missense_Mutation p.D265N 0.20 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 1 82416758 82416758 G A LPHN2 Missense_Mutation p.D517N 0.10 deleterious(0.02) probably_damaging(0.957) TCGA-IB-7651-01 1 82435043 82435043 T C LPHN2 Missense_Mutation p.L885P 0.10 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 82452608 82452608 A G LPHN2 Intron 0.10 TCGA-IB-7651-01 1 8418946 8418946 G A RERE Missense_Mutation p.L1217F 0.08 unknown(0) TCGA-IB-7651-01 1 8421825 8421825 G A RERE Nonsense_Mutation p.Q672* 0.20 TCGA-IB-7651-01 1 8424198 8424198 G A RERE Missense_Mutation p.P553L 0.08 probably_damaging(0.994) TCGA-IB-7651-01 1 84373275 84373275 C T TTLL7 Missense_Mutation p.R619H 0.16 deleterious(0) probably_damaging(0.932) TCGA-IB-7651-01 1 84417934 84417934 A G TTLL7 5'UTR 0.10 TCGA-IB-7651-01 1 84701061 84701061 C T PRKACB 3'UTR 0.22 TCGA-IB-7651-01 1 85124057 85124057 C A SSX2IP Missense_Mutation p.S341I 0.10 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 1 85412808 85412808 A C MCOLN2 Missense_Mutation p.F252C 0.19 deleterious(0.01) probably_damaging(0.954) TCGA-IB-7651-01 1 85431291 85431291 G A MCOLN2 Missense_Mutation p.R60C 0.09 deleterious(0.03) possibly_damaging(0.556) TCGA-IB-7651-01 1 85487850 85487850 G A MCOLN3 Missense_Mutation p.A408V 0.12 deleterious(0) possibly_damaging(0.811) TCGA-IB-7651-01 1 85491722 85491722 G A MCOLN3 Missense_Mutation p.S332F 0.13 deleterious(0.01) possibly_damaging(0.863) TCGA-IB-7651-01 1 85570251 85570251 C T WDR63 Silent p.C508C 0.19 TCGA-IB-7651-01 1 85647833 85647833 A G SYDE2 Missense_Mutation p.V831A 0.10 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 1 85930637 85930637 C A DDAH1 Missense_Mutation p.R31I 0.11 tolerated(0.09) possibly_damaging(0.846) TCGA-IB-7651-01 1 86167924 86167924 C T ZNHIT6 Missense_Mutation p.R312H 0.09 deleterious(0.02) benign(0.158) TCGA-IB-7651-01 1 86590924 86590924 C A COL24A1 Missense_Mutation p.E365D 0.08 tolerated(0.41) benign(0.001) TCGA-IB-7651-01 1 86590991 86590991 G A COL24A1 Missense_Mutation p.T343I 0.23 tolerated(0.28) benign(0.001) TCGA-IB-7651-01 1 86591325 86591325 C T COL24A1 Missense_Mutation p.A232T 0.23 tolerated(0.54) possibly_damaging(0.457) TCGA-IB-7651-01 1 86909588 86909588 C A CLCA2 Missense_Mutation p.P536H 0.24 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 1 86934771 86934771 C T CLCA1 Silent p.I39I 0.22 TCGA-IB-7651-01 1 86948009 86948009 C A CLCA1 Missense_Mutation p.L227I 0.13 deleterious(0.02) benign(0.004) TCGA-IB-7651-01 1 87025637 87025637 C T CLCA4 Missense_Mutation p.T61M 0.10 deleterious(0.02) possibly_damaging(0.908) TCGA-IB-7651-01 1 87033243 87033243 G T CLCA4 Missense_Mutation p.S364I 0.10 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 1 87101745 87101745 A C RP4-651E10.4 Intron 0.22 TCGA-IB-7651-01 1 87185243 87185243 C T SH3GLB1 Missense_Mutation p.R90C 0.05 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 87329266 87329266 A C SEP15 Missense_Mutation p.V127G 0.10 deleterious(0) possibly_damaging(0.545) TCGA-IB-7651-01 1 87549948 87549948 C A HS2ST1 Nonsense_Mutation p.Y145* 0.23 TCGA-IB-7651-01 1 879470 879470 G T SAMD11 Missense_Mutation p.K661N 0.18 deleterious(0) possibly_damaging(0.844) TCGA-IB-7651-01 1 892379 892379 C T NOC2L Silent p.A127A 0.22 TCGA-IB-7651-01 1 892589 892589 C T NOC2L Missense_Mutation p.E82K 0.21 deleterious(0) probably_damaging(0.985) TCGA-IB-7651-01 1 8931976 8931976 T A ENO1 Missense_Mutation p.N52I 0.12 deleterious_low_confidence(0) possibly_damaging(0.666) TCGA-IB-7651-01 1 89449678 89449678 C T RBMXL1 5'UTR 0.08 TCGA-IB-7651-01 1 89520419 89520419 G A GBP1 Silent p.N537N 0.05 TCGA-IB-7651-01 1 89525106 89525106 C T GBP1 Missense_Mutation p.D108N 0.09 tolerated(0.07) probably_damaging(0.991) TCGA-IB-7651-01 1 89575855 89575855 G A GBP2 Missense_Mutation p.A486V 0.10 tolerated(0.07) benign(0.104) TCGA-IB-7651-01 1 89587545 89587545 C T GBP2 Silent p.T35T 0.22 TCGA-IB-7651-01 1 89652754 89652754 G A GBP4 Missense_Mutation p.S481L 0.11 deleterious(0.01) benign(0.394) TCGA-IB-7651-01 1 89655896 89655896 G A GBP4 Missense_Mutation p.A341V 0.21 deleterious(0.02) possibly_damaging(0.8) TCGA-IB-7651-01 1 89657065 89657065 G A GBP4 Silent p.D265D 0.18 TCGA-IB-7651-01 1 897248 897248 C T KLHL17 Nonsense_Mutation p.R178* 0.10 TCGA-IB-7651-01 1 89727941 89727941 G T GBP5 Missense_Mutation p.L537M 0.18 tolerated(0.23) possibly_damaging(0.618) TCGA-IB-7651-01 1 90048877 90048877 C T LRRC8B Missense_Mutation p.S223F 0.25 tolerated(0.43) probably_damaging(0.986) TCGA-IB-7651-01 1 9011647 9011647 G A CA6 Intron 0.11 TCGA-IB-7651-01 1 90178779 90178779 C A LRRC8C Missense_Mutation p.P217H 0.11 tolerated(0.16) possibly_damaging(0.628) TCGA-IB-7651-01 1 90179146 90179146 C A LRRC8C Nonsense_Mutation p.Y339* 0.08 TCGA-IB-7651-01 1 9030969 9030969 C T CA6 Missense_Mutation p.T258I 0.15 tolerated(0.06) benign(0.32) TCGA-IB-7651-01 1 90398904 90398904 C T LRRC8D Missense_Mutation p.R93W 0.17 deleterious(0.02) benign(0) TCGA-IB-7651-01 1 90399281 90399281 C T LRRC8D Silent p.C218C 0.19 TCGA-IB-7651-01 1 90399638 90399638 C T LRRC8D Silent p.H337H 0.17 TCGA-IB-7651-01 1 90400677 90400677 C T LRRC8D Nonsense_Mutation p.R684* 0.08 TCGA-IB-7651-01 1 90470725 90470725 G A ZNF326 Missense_Mutation p.G44E 0.15 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-IB-7651-01 1 907699 907699 C T PLEKHN1 Silent p.C299C 0.11 TCGA-IB-7651-01 1 91182141 91182141 G A BARHL2 Silent p.D204D 0.06 TCGA-IB-7651-01 1 91405757 91405757 T C ZNF644 Missense_Mutation p.N385S 0.22 tolerated(0.5) benign(0.008) TCGA-IB-7651-01 1 91405961 91405961 T G ZNF644 Missense_Mutation p.K317T 0.22 deleterious(0.01) possibly_damaging(0.77) TCGA-IB-7651-01 1 91406463 91406463 C A ZNF644 Nonsense_Mutation p.E150* 0.21 TCGA-IB-7651-01 1 91727847 91727848 - T HFM1 Frame_Shift_Ins p.V1397Sfs*6 0.10 TCGA-IB-7651-01 1 91781522 91781522 C A HFM1 Missense_Mutation p.R997I 0.18 deleterious(0) probably_damaging(0.917) TCGA-IB-7651-01 1 91841173 91841173 T C HFM1 Missense_Mutation p.N503D 0.25 deleterious(0.01) benign(0.439) TCGA-IB-7651-01 1 9188913 9188913 C T GPR157 Silent p.L58L 0.18 TCGA-IB-7651-01 1 91967338 91967338 T C CDC7 Missense_Mutation p.F22S 0.12 tolerated_low_confidence(0.47) benign(0) TCGA-IB-7651-01 1 9211744 9211744 G T MIR34A RNA 0.09 TCGA-IB-7651-01 1 92200439 92200439 G T TGFBR3 Silent p.P154P 0.19 TCGA-IB-7651-01 1 92327108 92327108 C T TGFBR3 5'UTR 0.09 TCGA-IB-7651-01 1 92446276 92446276 C A BRDT Missense_Mutation p.S455Y 0.11 tolerated(0.1) benign(0.024) TCGA-IB-7651-01 1 92518101 92518101 G T EPHX4 Missense_Mutation p.G248V 0.07 deleterious(0) probably_damaging(0.946) TCGA-IB-7651-01 1 92568203 92568203 G A BTBD8 Missense_Mutation p.R174K 0.20 tolerated(1) benign(0) TCGA-IB-7651-01 1 92754605 92754605 T C GLMN Missense_Mutation p.I166M 0.08 tolerated(0.23) benign(0.029) TCGA-IB-7651-01 1 92789302 92789302 C T RPAP2 Silent p.G275G 0.10 TCGA-IB-7651-01 1 92801960 92801960 T G RPAP2 Missense_Mutation p.L532R 0.09 deleterious(0) probably_damaging(0.936) TCGA-IB-7651-01 1 92846382 92846382 A G RPAP2 Missense_Mutation p.D597G 0.10 deleterious(0.01) possibly_damaging(0.783) TCGA-IB-7651-01 1 9305205 9305205 A G H6PD Missense_Mutation p.K71R 0.21 deleterious(0.02) benign(0.009) TCGA-IB-7651-01 1 9324603 9324603 G T H6PD Missense_Mutation p.S684I 0.15 deleterious(0.01) benign(0.217) TCGA-IB-7651-01 1 9324735 9324735 G A H6PD Missense_Mutation p.R728H 0.13 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 9324884 9324884 G A H6PD Missense_Mutation p.G778S 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-IB-7651-01 1 93341969 93341969 G A FAM69A Missense_Mutation p.R25W 0.11 deleterious(0) probably_damaging(0.957) TCGA-IB-7651-01 1 93586135 93586135 A C MTF2 Missense_Mutation p.N276T 0.18 deleterious(0) possibly_damaging(0.566) TCGA-IB-7651-01 1 93602649 93602649 A C MTF2 3'UTR 0.10 TCGA-IB-7651-01 1 93646151 93646151 C T CCDC18 5'Flank 0.22 TCGA-IB-7651-01 1 93701841 93701841 G A CCDC18 Missense_Mutation p.E886K 0.11 tolerated(0.49) possibly_damaging(0.734) TCGA-IB-7651-01 1 93998513 93998513 A C FNBP1L Missense_Mutation p.K225T 0.10 deleterious(0) probably_damaging(0.917) TCGA-IB-7651-01 1 93998540 93998540 C A FNBP1L Missense_Mutation p.A234D 0.10 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 1 94017918 94017918 C T FNBP1L Intron 0.21 TCGA-IB-7651-01 1 94027687 94027687 C T BCAR3 3'UTR 0.17 TCGA-IB-7651-01 1 94140364 94140364 G T BCAR3 Silent p.A41A 0.23 TCGA-IB-7651-01 1 9416403 9416403 C T SPSB1 Silent p.H151H 0.10 TCGA-IB-7651-01 1 9416645 9416645 G A SPSB1 Splice_Site p.X232_splice 0.05 TCGA-IB-7651-01 1 94342258 94342258 G A DNTTIP2 Silent p.D411D 0.24 TCGA-IB-7651-01 1 94354716 94354716 C A GCLM Splice_Site p.X219_splice 0.12 TCGA-IB-7651-01 1 94471006 94471006 T G ABCA4 Missense_Mutation p.E2046D 0.20 tolerated(0.16) benign(0.026) TCGA-IB-7651-01 1 94512539 94512539 T C ABCA4 Missense_Mutation p.T952A 0.10 deleterious(0.02) benign(0.097) TCGA-IB-7651-01 1 94514490 94514490 C T ABCA4 Missense_Mutation p.A893T 0.11 tolerated(0.47) benign(0.004) TCGA-IB-7651-01 1 94522198 94522198 C T ABCA4 Missense_Mutation p.A781T 0.15 deleterious(0.02) benign(0.178) TCGA-IB-7651-01 1 94643259 94643259 C T ARHGAP29 Silent p.E938E 0.09 TCGA-IB-7651-01 1 94643433 94643433 T A ARHGAP29 Missense_Mutation p.K924M 0.21 deleterious(0) possibly_damaging(0.907) TCGA-IB-7651-01 1 94655696 94655696 A G ARHGAP29 Intron 0.25 TCGA-IB-7651-01 1 94668169 94668169 G A ARHGAP29 Silent p.G358G 0.21 TCGA-IB-7651-01 1 94955289 94955289 C A ABCD3 Missense_Mutation p.A389D 0.25 deleterious(0) benign(0.382) TCGA-IB-7651-01 1 94965137 94965137 C T ABCD3 Silent p.D569D 0.12 TCGA-IB-7651-01 1 95360495 95360495 C T SLC44A3 3'UTR 0.31 TCGA-IB-7651-01 1 95363358 95363358 G A CNN3 Silent p.G310G 0.07 TCGA-IB-7651-01 1 95369040 95369040 C T CNN3 Missense_Mutation p.R33H 0.20 tolerated(0.07) benign(0.325) TCGA-IB-7651-01 1 9661306 9661306 G A TMEM201 Silent p.L250L 0.05 TCGA-IB-7651-01 1 97217025 97217025 G A PTBP2 Silent p.P28P 0.21 TCGA-IB-7651-01 1 97564175 97564175 A G DPYD Missense_Mutation p.F879S 0.13 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 9776551 9776551 C T PIK3CD Silent p.A218A 0.09 TCGA-IB-7651-01 1 97771751 97771751 C T DPYD Missense_Mutation p.A721T 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 1 9780047 9780047 C T PIK3CD Silent p.R437R 0.18 TCGA-IB-7651-01 1 9780912 9780912 C T PIK3CD Missense_Mutation p.A545V 0.12 tolerated(0.32) benign(0.342) TCGA-IB-7651-01 1 9781612 9781612 G T PIK3CD Missense_Mutation p.R641L 0.06 deleterious(0) possibly_damaging(0.737) TCGA-IB-7651-01 1 979372 979372 C T AGRN Silent p.I656I 0.10 TCGA-IB-7651-01 1 989173 989173 C T AGRN Missense_Mutation p.R1898C 0.10 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 1 989228 989228 C T AGRN Missense_Mutation p.A1916V 0.20 tolerated(0.19) possibly_damaging(0.867) TCGA-IB-7651-01 1 99161105 99161105 G T SNX7 Missense_Mutation p.G224V 0.07 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 1 99161198 99161198 A C SNX7 Missense_Mutation p.N255T 0.19 tolerated(0.08) benign(0.003) TCGA-IB-7651-01 1 99470004 99470004 A G LPPR5 Missense_Mutation p.V75A 0.10 tolerated(0.09) benign(0.272) TCGA-IB-7651-01 1 99771377 99771377 G A LPPR4 Missense_Mutation p.G368E 0.10 tolerated(1) benign(0.118) TCGA-IB-7651-01 1 99771527 99771527 C T LPPR4 Missense_Mutation p.P418L 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 1 9990509 9990509 C A LZIC Missense_Mutation p.G174V 0.04 deleterious(0.01) possibly_damaging(0.661) TCGA-IB-7651-01 20 10582383 10582383 C A SLX4IP Silent p.L107L 0.13 TCGA-IB-7651-01 20 10620604 10620604 C A JAG1 Splice_Site p.X1067_splice 0.17 TCGA-IB-7651-01 20 10621489 10621489 C T JAG1 Silent p.S1047S 0.20 TCGA-IB-7651-01 20 1144966 1144966 C T PSMF1 Missense_Mutation p.R204W 0.18 deleterious(0.05) possibly_damaging(0.72) TCGA-IB-7651-01 20 1146952 1146952 C T PSMF1 3'UTR 0.23 TCGA-IB-7651-01 20 1286372 1286372 C T SNPH Missense_Mutation p.R387W 0.22 tolerated(0.05) possibly_damaging(0.599) TCGA-IB-7651-01 20 13140662 13140662 G A SPTLC3 Silent p.R476R 0.16 TCGA-IB-7651-01 20 13279702 13279702 G A ISM1 Missense_Mutation p.A331T 0.23 deleterious(0.04) probably_damaging(0.998) TCGA-IB-7651-01 20 1352850 1352850 G T FKBP1A Missense_Mutation p.S78Y 0.18 deleterious(0) probably_damaging(0.952) TCGA-IB-7651-01 20 13695780 13695780 T G ESF1 Missense_Mutation p.Y766S 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 20 13698151 13698151 G T ESF1 Missense_Mutation p.A709D 0.05 tolerated(0.12) possibly_damaging(0.741) TCGA-IB-7651-01 20 13714488 13714488 A C ESF1 Silent p.G610G 0.17 TCGA-IB-7651-01 20 13765687 13765687 G A NDUFAF5 5'UTR 0.11 TCGA-IB-7651-01 20 13830889 13830889 G A SEL1L2 Missense_Mutation p.A519V 0.19 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-IB-7651-01 20 13868480 13868480 G A SEL1L2 Missense_Mutation p.S227L 0.17 tolerated(0.09) possibly_damaging(0.73) TCGA-IB-7651-01 20 13868619 13868619 G T SEL1L2 Missense_Mutation p.A211D 0.16 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 20 13869125 13869125 T C SEL1L2 Missense_Mutation p.M195V 0.22 tolerated(1) benign(0.01) TCGA-IB-7651-01 20 13971165 13971165 G A SEL1L2 Silent p.L6L 0.16 TCGA-IB-7651-01 20 1426401 1426401 A G NSFL1C Missense_Mutation p.I289T 0.20 deleterious(0) benign(0.183) TCGA-IB-7651-01 20 14307515 14307515 T G FLRT3 Missense_Mutation p.N213T 0.18 deleterious(0.04) probably_damaging(0.997) TCGA-IB-7651-01 20 14307947 14307947 T C FLRT3 Missense_Mutation p.Q69R 0.18 tolerated(0.55) benign(0.005) TCGA-IB-7651-01 20 14308063 14308063 G A FLRT3 Silent p.S30S 0.16 TCGA-IB-7651-01 20 1433256 1433256 G A NSFL1C Missense_Mutation p.R225W 0.19 tolerated(0.2) benign(0.09) TCGA-IB-7651-01 20 1438856 1438856 C T NSFL1C Silent p.E89E 0.16 TCGA-IB-7651-01 20 14474150 14474150 A T MACROD2 Silent p.G99G 0.08 TCGA-IB-7651-01 20 1460374 1460374 G A SIRPB2 Missense_Mutation p.S141L 0.04 tolerated(0.66) benign(0.001) TCGA-IB-7651-01 20 1552374 1552374 G A SIRPB1 Missense_Mutation p.A248V 0.16 tolerated(0.41) benign(0.04) TCGA-IB-7651-01 20 1592006 1592006 G A SIRPB1 Intron 0.36 TCGA-IB-7651-01 20 1592091 1592091 G A SIRPB1 Intron 0.31 TCGA-IB-7651-01 20 15948212 15948212 G A MACROD2 Missense_Mutation p.E308K 0.15 deleterious_low_confidence(0.01) benign(0.001) TCGA-IB-7651-01 20 15948254 15948254 C T MACROD2 Missense_Mutation p.R322C 0.15 tolerated_low_confidence(1) benign(0) TCGA-IB-7651-01 20 16021894 16021894 G T MACROD2 Missense_Mutation p.S401I 0.17 deleterious_low_confidence(0.02) benign(0.034) TCGA-IB-7651-01 20 16030553 16030553 T A MACROD2 3'UTR 0.15 TCGA-IB-7651-01 20 1615981 1615981 G A SIRPG Missense_Mutation p.A338V 0.19 tolerated(0.14) benign(0.038) TCGA-IB-7651-01 20 1629742 1629742 T C SIRPG Missense_Mutation p.N129S 0.04 deleterious(0.02) benign(0.016) TCGA-IB-7651-01 20 16348282 16348282 A T KIF16B Missense_Mutation p.F1230I 0.20 tolerated_low_confidence(0.39) benign(0.047) TCGA-IB-7651-01 20 16355009 16355009 G A KIF16B Silent p.V1081V 0.18 TCGA-IB-7651-01 20 16729634 16729634 G T OTOR Nonsense_Mutation p.E80* 0.20 TCGA-IB-7651-01 20 168663 168663 C T DEFB128 Missense_Mutation p.G49E 0.18 deleterious(0.01) probably_damaging(0.993) TCGA-IB-7651-01 20 17462277 17462277 C A PCSK2 Silent p.A493A 0.19 TCGA-IB-7651-01 20 17610570 17610570 G A RRBP1 Missense_Mutation p.R450C 0.19 deleterious(0) possibly_damaging(0.835) TCGA-IB-7651-01 20 17923780 17923780 A C SNX5 Missense_Mutation p.S380A 0.17 tolerated(1) benign(0.002) TCGA-IB-7651-01 20 17934647 17934647 G T SNX5 Missense_Mutation p.L128M 0.19 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 20 18143582 18143582 G A CSRP2BP Missense_Mutation p.R555Q 0.12 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 20 18162409 18162409 G A CSRP2BP Missense_Mutation p.R576H 0.17 deleterious(0) possibly_damaging(0.573) TCGA-IB-7651-01 20 18296806 18296806 G A ZNF133 Silent p.P436P 0.20 TCGA-IB-7651-01 20 18297040 18297040 G A ZNF133 Silent p.T514T 0.12 TCGA-IB-7651-01 20 18297174 18297174 G T ZNF133 Missense_Mutation p.G559V 0.17 tolerated(0.15) benign(0.156) TCGA-IB-7651-01 20 18297503 18297503 C T ZNF133 3'UTR 0.21 TCGA-IB-7651-01 20 18471048 18471048 G A RBBP9 Missense_Mutation p.R109C 0.19 deleterious(0) benign(0.023) TCGA-IB-7651-01 20 1896098 1896098 C A SIRPA Missense_Mutation p.R145S 0.07 tolerated(1) benign(0.005) TCGA-IB-7651-01 20 1903222 1903222 G A SIRPA Missense_Mutation p.A340T 0.21 tolerated(0.05) benign(0.279) TCGA-IB-7651-01 20 1960819 1960819 G A PDYN 3'UTR 0.18 TCGA-IB-7651-01 20 1961097 1961097 G A PDYN Missense_Mutation p.R213C 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 20 1961244 1961244 C T PDYN Missense_Mutation p.A164T 0.15 tolerated(0.13) benign(0.001) TCGA-IB-7651-01 20 19698237 19698237 G A SLC24A3 Silent p.T595T 0.20 TCGA-IB-7651-01 20 20016875 20016875 G A CRNKL1 Silent p.H837H 0.14 TCGA-IB-7651-01 20 20144736 20144736 T C C20orf26 Missense_Mutation p.Y357H 0.10 tolerated(0.55) benign(0) TCGA-IB-7651-01 20 20180434 20180434 C A C20orf26 Missense_Mutation p.S607Y 0.19 deleterious(0.05) probably_damaging(0.981) TCGA-IB-7651-01 20 20180517 20180517 G A C20orf26 Missense_Mutation p.A635T 0.10 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 20 20269275 20269275 A C C20orf26 Missense_Mutation p.K940T 0.16 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 20 20278871 20278871 G A C20orf26 Missense_Mutation p.R1088Q 0.19 deleterious(0.04) benign(0.333) TCGA-IB-7651-01 20 20279025 20279025 C T C20orf26 Silent p.L1139L 0.17 TCGA-IB-7651-01 20 20340951 20340951 T G C20orf26 Missense_Mutation p.F1204C 0.20 deleterious(0) probably_damaging(0.957) TCGA-IB-7651-01 20 20517328 20517328 T G RALGAPA2 Missense_Mutation p.E1129A 0.21 tolerated(0.16) benign(0.002) TCGA-IB-7651-01 20 20620538 20620538 A G RALGAPA2 Missense_Mutation p.I186T 0.19 deleterious(0.01) benign(0.06) TCGA-IB-7651-01 20 2097346 2097346 C T STK35 Silent p.C309C 0.17 TCGA-IB-7651-01 20 21142511 21142511 G A RP4-777D9.2 Intron 0.09 TCGA-IB-7651-01 20 21142621 21142621 A G RP4-777D9.2 Intron 0.18 TCGA-IB-7651-01 20 21142762 21142762 A C RP4-777D9.2 Intron 0.18 TCGA-IB-7651-01 20 21306927 21306927 G A XRN2 Missense_Mutation p.C29Y 0.16 tolerated(0.54) benign(0.008) TCGA-IB-7651-01 20 21314400 21314400 G T XRN2 Missense_Mutation p.S331I 0.19 tolerated(0.09) benign(0.05) TCGA-IB-7651-01 20 21346218 21346218 G T XRN2 Missense_Mutation p.A778S 0.16 tolerated(0.26) benign(0.002) TCGA-IB-7651-01 20 21376850 21376850 T G NKX2-4 Missense_Mutation p.Q255P 0.20 tolerated(0.06) possibly_damaging(0.622) TCGA-IB-7651-01 20 21492786 21492786 C T NKX2-2 Silent p.S199S 0.10 TCGA-IB-7651-01 20 21494152 21494152 G A NKX2-2 Silent p.A52A 0.22 TCGA-IB-7651-01 20 2298000 2298000 G A TGM3 Silent p.L284L 0.16 TCGA-IB-7651-01 20 23016359 23016359 C T SSTR4 Missense_Mutation p.T80M 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 20 23016448 23016448 C T SSTR4 Missense_Mutation p.R110C 0.10 tolerated(0.1) probably_damaging(0.932) TCGA-IB-7651-01 20 23016594 23016594 G A SSTR4 Silent p.R158R 0.20 TCGA-IB-7651-01 20 23016650 23016650 T A SSTR4 Missense_Mutation p.V177D 0.19 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 20 23028870 23028870 G T THBD Missense_Mutation p.S424R 0.14 tolerated(0.36) benign(0.088) TCGA-IB-7651-01 20 23028930 23028930 G T THBD Nonsense_Mutation p.C404* 0.16 TCGA-IB-7651-01 20 23066450 23066450 T C CD93 Missense_Mutation p.N127S 0.16 deleterious(0.04) possibly_damaging(0.841) TCGA-IB-7651-01 20 23066551 23066551 G A CD93 Silent p.F93F 0.18 TCGA-IB-7651-01 20 23066662 23066662 G A CD93 Silent p.N56N 0.14 TCGA-IB-7651-01 20 2308989 2308989 G A TGM3 Silent p.T437T 0.17 TCGA-IB-7651-01 20 23335079 23335079 G A NXT1 Missense_Mutation p.R134H 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-IB-7651-01 20 23345726 23345726 C T GZF1 Missense_Mutation p.P236S 0.18 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 20 23346039 23346039 A G GZF1 Missense_Mutation p.H340R 0.15 deleterious(0.02) benign(0.424) TCGA-IB-7651-01 20 23350348 23350348 C T GZF1 Silent p.T585T 0.17 TCGA-IB-7651-01 20 23350364 23350364 C T GZF1 Missense_Mutation p.R591W 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 20 23350738 23350738 A C GZF1 Missense_Mutation p.K599T 0.19 tolerated(0.06) benign(0.292) TCGA-IB-7651-01 20 23420897 23420897 C A CSTL1 5'UTR 0.18 TCGA-IB-7651-01 20 23433311 23433311 G A CST11 Silent p.D46D 0.20 TCGA-IB-7651-01 20 23472259 23472259 G A CST8 5'UTR 0.08 TCGA-IB-7651-01 20 23476608 23476608 C T CST8 3'UTR 0.21 TCGA-IB-7651-01 20 23545518 23545518 G T CST9L 3'UTR 0.21 TCGA-IB-7651-01 20 23548955 23548955 G A CST9L Missense_Mutation p.R45C 0.10 tolerated(0.11) possibly_damaging(0.535) TCGA-IB-7651-01 20 23549084 23549084 G T CST9L Missense_Mutation p.L2M 0.07 tolerated_low_confidence(0.22) possibly_damaging(0.488) TCGA-IB-7651-01 20 23804602 23804602 G A CST2 3'UTR 0.12 TCGA-IB-7651-01 20 23807102 23807102 G A CST2 Missense_Mutation p.R66C 0.16 deleterious(0.04) possibly_damaging(0.594) TCGA-IB-7651-01 20 23807128 23807128 T C CST2 Missense_Mutation p.K57R 0.08 tolerated(0.17) benign(0.069) TCGA-IB-7651-01 20 2384147 2384147 G T TGM6 Splice_Site p.X365_splice 0.20 TCGA-IB-7651-01 20 2398031 2398031 G A TGM6 Missense_Mutation p.G497D 0.23 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 20 24523786 24523786 A G SYNDIG1 Missense_Mutation p.D18G 0.18 tolerated_low_confidence(0.06) possibly_damaging(0.464) TCGA-IB-7651-01 20 2463857 2463857 G A ZNF343 Nonsense_Mutation p.R584* 0.18 TCGA-IB-7651-01 20 24940294 24940294 C T CST7 Silent p.V128V 0.17 TCGA-IB-7651-01 20 25003612 25003612 C T ACSS1 Silent p.Q308Q 0.10 TCGA-IB-7651-01 20 25203540 25203540 C T ENTPD6 Missense_Mutation p.T371M 0.18 deleterious(0.01) possibly_damaging(0.87) TCGA-IB-7651-01 20 25205907 25205907 G T ENTPD6 Missense_Mutation p.S437I 0.12 tolerated(0.07) benign(0.257) TCGA-IB-7651-01 20 25205943 25205943 A G ENTPD6 Missense_Mutation p.K449R 0.14 tolerated(0.35) benign(0.097) TCGA-IB-7651-01 20 25277122 25277122 C T PYGB Silent p.D832D 0.15 TCGA-IB-7651-01 20 25288673 25288673 G A ABHD12 Missense_Mutation p.P266S 0.12 tolerated(0.06) probably_damaging(0.999) TCGA-IB-7651-01 20 25450686 25450686 G A NINL Silent p.N1098N 0.19 TCGA-IB-7651-01 20 25457376 25457376 G A NINL Missense_Mutation p.P851S 0.20 tolerated(0.1) benign(0.132) TCGA-IB-7651-01 20 25470535 25470535 G A NINL Silent p.D524D 0.20 TCGA-IB-7651-01 20 25507115 25507115 G A NINL Missense_Mutation p.L37F 0.17 tolerated(0.72) benign(0.014) TCGA-IB-7651-01 20 2552886 2552886 C T TMC2 Silent p.L206L 0.18 TCGA-IB-7651-01 20 25656542 25656542 A G ZNF337 Missense_Mutation p.V461A 0.09 tolerated(0.63) benign(0.418) TCGA-IB-7651-01 20 25657080 25657080 G A ZNF337 Missense_Mutation p.H282Y 0.18 deleterious(0) possibly_damaging(0.866) TCGA-IB-7651-01 20 2597782 2597782 T C TMC2 Missense_Mutation p.Y669H 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 20 259966 259966 C T C20orf96 Silent p.S104S 0.17 TCGA-IB-7651-01 20 2604978 2604978 C A TMC2 Missense_Mutation p.L748M 0.22 tolerated(0.39) benign(0.066) TCGA-IB-7651-01 20 2636076 2636076 G T NOP56 Missense_Mutation p.E225D 0.20 tolerated(0.32) benign(0.019) TCGA-IB-7651-01 20 2636275 2636275 C T NOP56 Silent p.I264I 0.19 TCGA-IB-7651-01 20 2636638 2636638 C T NOP56 Missense_Mutation p.A323V 0.16 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 20 2638942 2638942 A G NOP56 3'UTR 0.14 TCGA-IB-7651-01 20 2639345 2639345 C T IDH3B 3'UTR 0.20 TCGA-IB-7651-01 20 2774729 2774729 C T CPXM1 3'UTR 0.25 TCGA-IB-7651-01 20 2777179 2777179 C T CPXM1 Missense_Mutation p.E347K 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 20 279106 279106 C A ZCCHC3 Silent p.I293I 0.17 TCGA-IB-7651-01 20 2820524 2820524 C T PCED1A Missense_Mutation p.R12H 0.20 tolerated_low_confidence(0.07) benign(0.003) TCGA-IB-7651-01 20 29965236 29965236 C T DEFB118 3'Flank 0.18 TCGA-IB-7651-01 20 30064336 30064336 C A REM1 Missense_Mutation p.P30T 0.08 tolerated(0.07) benign(0.017) TCGA-IB-7651-01 20 30227779 30227779 C A COX4I2 Silent p.A42A 0.13 TCGA-IB-7651-01 20 30232619 30232619 A C COX4I2 Missense_Mutation p.Q143P 0.15 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 20 3025459 3025459 C T GNRH2 Nonsense_Mutation p.R97* 0.16 TCGA-IB-7651-01 20 30371596 30371596 G A TPX2 Missense_Mutation p.E429K 0.21 tolerated(0.3) benign(0.001) TCGA-IB-7651-01 20 30388825 30388825 G A TPX2 Missense_Mutation p.S729N 0.16 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 20 30388998 30388998 A G TPX2 3'UTR 0.23 TCGA-IB-7651-01 20 30411332 30411332 G A MYLK2 Silent p.R275R 0.04 TCGA-IB-7651-01 20 30418629 30418629 A C MYLK2 Missense_Mutation p.N411T 0.15 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 20 30418685 30418685 G T MYLK2 Missense_Mutation p.A430S 0.17 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 20 30419645 30419645 G A MYLK2 Missense_Mutation p.V522I 0.18 tolerated(0.68) benign(0.062) TCGA-IB-7651-01 20 30436230 30436230 C T FOXS1 5'Flank 0.14 TCGA-IB-7651-01 20 30747903 30747903 C T TM9SF4 Silent p.L560L 0.20 TCGA-IB-7651-01 20 31021562 31021562 G A ASXL1 Missense_Mutation p.D521N 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-IB-7651-01 20 31024411 31024411 G A ASXL1 Missense_Mutation p.G1299D 0.16 tolerated(0.09) benign(0.393) TCGA-IB-7651-01 20 31380565 31380565 A C DNMT3B Missense_Mutation p.N352T 0.18 tolerated(0.4) benign(0.006) TCGA-IB-7651-01 20 31387092 31387092 C T DNMT3B Missense_Mutation p.R573W 0.16 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 20 31413783 31413783 G A MAPRE1 Missense_Mutation p.R17Q 0.19 deleterious(0.03) possibly_damaging(0.665) TCGA-IB-7651-01 20 31424452 31424452 G A MAPRE1 Missense_Mutation p.D94N 0.15 deleterious(0.02) benign(0.35) TCGA-IB-7651-01 20 31434492 31434492 G A MAPRE1 Silent p.R222R 0.19 TCGA-IB-7651-01 20 3146582 3146582 C T LZTS3 Missense_Mutation p.G295D 0.16 tolerated(0.11) probably_damaging(0.992) TCGA-IB-7651-01 20 31606506 31606506 C T BPIFB2 Missense_Mutation p.P245S 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 20 31627288 31627288 C T BPIFB6 Missense_Mutation p.R346W 0.17 deleterious(0.02) probably_damaging(0.958) TCGA-IB-7651-01 20 3175985 3175985 C T DDRGK1 Silent p.R175R 0.17 TCGA-IB-7651-01 20 31768402 31768402 T C BPIFA2 Intron 0.17 TCGA-IB-7651-01 20 31825910 31825910 C A BPIFA1 Missense_Mutation p.N70K 0.18 tolerated(0.2) benign(0.075) TCGA-IB-7651-01 20 31885345 31885345 C T BPIFB1 Silent p.I204I 0.09 TCGA-IB-7651-01 20 31973465 31973465 A G CDK5RAP1 Silent p.L289L 0.09 TCGA-IB-7651-01 20 31979986 31979986 C T CDK5RAP1 Missense_Mutation p.R169Q 0.14 deleterious(0.02) possibly_damaging(0.63) TCGA-IB-7651-01 20 32005695 32005695 C A SNTA1 Missense_Mutation p.K177N 0.18 deleterious(0) possibly_damaging(0.803) TCGA-IB-7651-01 20 3209045 3209045 C A SLC4A11 Silent p.R849R 0.16 TCGA-IB-7651-01 20 3212030 3212030 C T SLC4A11 Silent p.A341A 0.17 TCGA-IB-7651-01 20 32199034 32199034 C T CBFA2T2 Nonsense_Mutation p.R114* 0.19 TCGA-IB-7651-01 20 32212656 32212656 A G CBFA2T2 Missense_Mutation p.H269R 0.18 deleterious(0.02) benign(0.017) TCGA-IB-7651-01 20 32212784 32212784 C A CBFA2T2 Missense_Mutation p.L312I 0.21 tolerated(0.41) benign(0.067) TCGA-IB-7651-01 20 32232319 32232319 C G CBFA2T2 Missense_Mutation p.P561R 0.20 deleterious(0.02) benign(0.148) TCGA-IB-7651-01 20 32333101 32333101 G A ZNF341 Missense_Mutation p.R112H 0.19 deleterious(0.02) possibly_damaging(0.686) TCGA-IB-7651-01 20 32379326 32379326 G T ZNF341 3'UTR 0.18 TCGA-IB-7651-01 20 3245112 3245112 G A C20orf194 Nonsense_Mutation p.R949* 0.19 TCGA-IB-7651-01 20 32879233 32879233 C T AHCY Missense_Mutation p.V184I 0.16 tolerated_low_confidence(0.09) benign(0.027) TCGA-IB-7651-01 20 32883326 32883326 G T AHCY Missense_Mutation p.L32M 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-IB-7651-01 20 33045246 33045246 G A ITCH Missense_Mutation p.R462Q 0.20 deleterious(0) possibly_damaging(0.833) TCGA-IB-7651-01 20 33057852 33057852 G A ITCH Splice_Site p.X516_splice 0.17 TCGA-IB-7651-01 20 33147545 33147545 G A MAP1LC3A Missense_Mutation p.R74H 0.20 deleterious(0) benign(0.025) TCGA-IB-7651-01 20 33296666 33296666 G A TP53INP2 Silent p.P41P 0.20 TCGA-IB-7651-01 20 33298084 33298084 G A TP53INP2 Silent p.Q212Q 0.20 TCGA-IB-7651-01 20 33330454 33330454 C T NCOA6 Silent p.A1202A 0.09 TCGA-IB-7651-01 20 33345486 33345486 C T NCOA6 Silent p.Q355Q 0.16 TCGA-IB-7651-01 20 33447341 33447341 G A GGT7 Missense_Mutation p.R307W 0.18 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 20 33517274 33517274 G A GSS Silent p.L411L 0.18 TCGA-IB-7651-01 20 33523406 33523406 G T GSS Silent p.G269G 0.21 TCGA-IB-7651-01 20 33565843 33565843 G A MYH7B Missense_Mutation p.R54H 0.19 benign(0.001) TCGA-IB-7651-01 20 33567510 33567510 G A MYH7B Missense_Mutation p.R124H 0.20 possibly_damaging(0.607) TCGA-IB-7651-01 20 33575697 33575697 G A MYH7B Missense_Mutation p.A508T 0.15 probably_damaging(0.999) TCGA-IB-7651-01 20 33578879 33578879 G A MYH7B Missense_Mutation p.R755H 0.11 probably_damaging(0.984) TCGA-IB-7651-01 20 33582190 33582190 C A MYH7B Missense_Mutation p.L938M 0.08 probably_damaging(0.999) TCGA-IB-7651-01 20 33588098 33588098 G A MYH7B Missense_Mutation p.R1637H 0.18 possibly_damaging(0.756) TCGA-IB-7651-01 20 33591414 33591414 G A TRPC4AP Silent p.N685N 0.31 TCGA-IB-7651-01 20 3363127 3363127 C T C20orf194 Missense_Mutation p.S37N 0.12 deleterious(0.05) benign(0.208) TCGA-IB-7651-01 20 33725733 33725733 G A EDEM2 Missense_Mutation p.S147F 0.07 deleterious(0.01) probably_damaging(0.928) TCGA-IB-7651-01 20 33834760 33834760 G T MMP24 Missense_Mutation p.V122F 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 20 33874450 33874450 C A FAM83C Missense_Mutation p.S711I 0.20 deleterious_low_confidence(0) benign(0.165) TCGA-IB-7651-01 20 33879692 33879692 G A FAM83C Missense_Mutation p.T139I 0.18 tolerated(0.05) probably_damaging(1) TCGA-IB-7651-01 20 34022620 34022620 C T GDF5OS Missense_Mutation p.P222S 0.19 tolerated_low_confidence(0.14) benign(0.008) TCGA-IB-7651-01 20 34025405 34025405 C T GDF5 Missense_Mutation p.G102S 0.20 deleterious_low_confidence(0.02) benign(0.12) TCGA-IB-7651-01 20 34081331 34081331 G A CEP250 Missense_Mutation p.D989N 0.23 benign(0.034) TCGA-IB-7651-01 20 34257541 34257541 C T NFS1 3'UTR 0.20 TCGA-IB-7651-01 20 34288758 34288758 G T ROMO1 Missense_Mutation p.G57V 0.14 deleterious(0) probably_damaging(0.935) TCGA-IB-7651-01 20 34319920 34319920 C T RBM39 Missense_Mutation p.R80Q 0.19 tolerated(0.15) benign(0.238) TCGA-IB-7651-01 20 34572607 34572607 C T CNBD2 Missense_Mutation p.T208M 0.10 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 20 34582960 34582960 G A CNBD2 Missense_Mutation p.G286S 0.13 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 20 34778662 34778662 C T EPB41L1 Missense_Mutation p.P415S 0.11 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 20 34782221 34782221 G A EPB41L1 Missense_Mutation p.G463E 0.21 tolerated(0.42) benign(0.002) TCGA-IB-7651-01 20 35068238 35068238 C T DLGAP4 Silent p.S441S 0.13 TCGA-IB-7651-01 20 35128033 35128033 G A DLGAP4 Intron 0.16 TCGA-IB-7651-01 20 35128676 35128676 G T DLGAP4 Missense_Mutation p.S722I 0.19 deleterious(0.05) possibly_damaging(0.676) TCGA-IB-7651-01 20 35128951 35128951 C T DLGAP4 Missense_Mutation p.R814W 0.15 deleterious(0) benign(0.092) TCGA-IB-7651-01 20 35154346 35154346 C T DLGAP4 Silent p.F896F 0.24 TCGA-IB-7651-01 20 35177499 35177499 C T MYL9 Silent p.H122H 0.16 TCGA-IB-7651-01 20 35433281 35433281 C T SOGA1 Missense_Mutation p.A982T 0.08 deleterious(0.02) probably_damaging(0.927) TCGA-IB-7651-01 20 35443843 35443843 C T SOGA1 Missense_Mutation p.D668N 0.18 deleterious(0.03) benign(0.013) TCGA-IB-7651-01 20 35457524 35457524 C T SOGA1 Missense_Mutation p.R335H 0.14 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 20 35467829 35467829 G T SOGA1 Missense_Mutation p.L235M 0.22 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 20 35504596 35504596 C T TLDC2 Missense_Mutation p.R7C 0.18 tolerated_low_confidence(0.07) possibly_damaging(0.863) TCGA-IB-7651-01 20 35547879 35547879 G T SAMHD1 Missense_Mutation p.S247Y 0.19 deleterious(0) benign(0.296) TCGA-IB-7651-01 20 35563450 35563450 C T SAMHD1 Missense_Mutation p.R164Q 0.23 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 20 35563508 35563508 G A SAMHD1 Nonsense_Mutation p.R145* 0.21 TCGA-IB-7651-01 20 3564588 3564588 G T ATRN Missense_Mutation p.R936S 0.18 deleterious(0.01) probably_damaging(0.937) TCGA-IB-7651-01 20 35696435 35696435 T G RBL1 Missense_Mutation p.N149H 0.16 deleterious(0.02) probably_damaging(0.961) TCGA-IB-7651-01 20 35731106 35731106 C T MROH8 Missense_Mutation p.G1065D 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.656) TCGA-IB-7651-01 20 35738747 35738747 G A MROH8 Silent p.C969C 0.17 TCGA-IB-7651-01 20 36030016 36030016 G A SRC Missense_Mutation p.D351N 0.14 deleterious(0.01) benign(0.022) TCGA-IB-7651-01 20 3627503 3627503 C A ATRN 3'UTR 0.16 TCGA-IB-7651-01 20 3640539 3640539 C T GFRA4 3'Flank 0.15 TCGA-IB-7651-01 20 3660157 3660157 G A ADAM33 Silent p.T53T 0.20 TCGA-IB-7651-01 20 36627613 36627613 G - TTI1 Frame_Shift_Del p.L924Wfs*37 0.12 TCGA-IB-7651-01 20 36640284 36640284 G T TTI1 Missense_Mutation p.F645L 0.19 deleterious(0) probably_damaging(0.953) TCGA-IB-7651-01 20 36640365 36640365 G T TTI1 Nonsense_Mutation p.C618* 0.21 TCGA-IB-7651-01 20 36662454 36662454 G A RPRD1B Silent p.K35K 0.17 TCGA-IB-7651-01 20 3669866 3669866 C T SIGLEC1 Missense_Mutation p.R1669H 0.18 tolerated(0.66) benign(0.001) TCGA-IB-7651-01 20 3673242 3673242 G A SIGLEC1 Missense_Mutation p.A1319V 0.18 tolerated(0.1) possibly_damaging(0.803) TCGA-IB-7651-01 20 3673398 3673398 G A SIGLEC1 Missense_Mutation p.P1267L 0.24 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 20 3673553 3673553 C A SIGLEC1 Missense_Mutation p.S1245I 0.06 deleterious(0) probably_damaging(0.962) TCGA-IB-7651-01 20 3673586 3673586 C A SIGLEC1 Missense_Mutation p.R1234M 0.22 deleterious(0.04) possibly_damaging(0.612) TCGA-IB-7651-01 20 36775176 36775176 C T TGM2 Missense_Mutation p.G268S 0.06 tolerated(0.19) benign(0.157) TCGA-IB-7651-01 20 3678683 3678683 G A SIGLEC1 Silent p.S628S 0.19 TCGA-IB-7651-01 20 3679957 3679957 G T SIGLEC1 Missense_Mutation p.L560I 0.23 deleterious(0.01) probably_damaging(0.936) TCGA-IB-7651-01 20 37153514 37153514 C A RALGAPB Missense_Mutation p.F571L 0.18 tolerated(0.23) probably_damaging(0.994) TCGA-IB-7651-01 20 372084 372084 C T TRIB3 Nonsense_Mutation p.R149* 0.21 TCGA-IB-7651-01 20 3730865 3730865 G A HSPA12B Missense_Mutation p.R431H 0.21 deleterious(0) probably_damaging(0.921) TCGA-IB-7651-01 20 3735096 3735096 G A C20orf27 Silent p.C149C 0.16 TCGA-IB-7651-01 20 37394145 37394145 C T ACTR5 Missense_Mutation p.P426L 0.14 tolerated(0.11) benign(0.024) TCGA-IB-7651-01 20 37524228 37524228 G T PPP1R16B Missense_Mutation p.E114D 0.10 tolerated(0.1) possibly_damaging(0.5) TCGA-IB-7651-01 20 37546928 37546928 C T PPP1R16B Silent p.N441N 0.16 TCGA-IB-7651-01 20 37580769 37580769 G A FAM83D Missense_Mutation p.G485E 0.17 tolerated(0.23) benign(0.048) TCGA-IB-7651-01 20 37581272 37581272 T G FAM83D 3'UTR 0.20 TCGA-IB-7651-01 20 3766779 3766779 C T CENPB Missense_Mutation p.A118T 0.20 tolerated(0.06) unknown(0) TCGA-IB-7651-01 20 3785572 3785572 C T CDC25B Silent p.S569S 0.14 TCGA-IB-7651-01 20 3804798 3804798 C A AP5S1 Missense_Mutation p.L153M 0.16 deleterious(0.01) probably_damaging(0.952) TCGA-IB-7651-01 20 3841982 3841982 C T MAVS Missense_Mutation p.T99I 0.15 tolerated(0.1) possibly_damaging(0.776) TCGA-IB-7651-01 20 3842924 3842924 G A MAVS Silent p.T163T 0.19 TCGA-IB-7651-01 20 3869814 3869814 C T PANK2 Silent p.L23L 0.16 TCGA-IB-7651-01 20 390527 390527 G T RBCK1 Nonsense_Mutation p.E9* 0.17 TCGA-IB-7651-01 20 3914846 3914846 C T RNF24 Missense_Mutation p.C125Y 0.18 deleterious(0) possibly_damaging(0.563) TCGA-IB-7651-01 20 39802571 39802571 G A PLCG1 Missense_Mutation p.A1189T 0.19 deleterious(0.03) benign(0.103) TCGA-IB-7651-01 20 39831542 39831542 G A ZHX3 Missense_Mutation p.T672I 0.09 tolerated(0.18) benign(0.058) TCGA-IB-7651-01 20 39833400 39833400 C A ZHX3 Missense_Mutation p.A53S 0.17 tolerated(0.16) benign(0.028) TCGA-IB-7651-01 20 400247 400247 C T RBCK1 Missense_Mutation p.R210W 0.24 deleterious(0.02) benign(0.22) TCGA-IB-7651-01 20 40050062 40050062 G A CHD6 Missense_Mutation p.S1738L 0.05 tolerated_low_confidence(0.21) benign(0.002) TCGA-IB-7651-01 20 40052176 40052176 G T CHD6 Missense_Mutation p.A1504D 0.19 deleterious(0) possibly_damaging(0.508) TCGA-IB-7651-01 20 40068746 40068746 G A CHD6 Nonsense_Mutation p.R1301* 0.21 TCGA-IB-7651-01 20 40111947 40111947 A G CHD6 Splice_Site p.X823_splice 0.19 TCGA-IB-7651-01 20 40118638 40118638 T C CHD6 Missense_Mutation p.E487G 0.04 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 20 40709431 40709431 G T PTPRT 3'UTR 0.20 TCGA-IB-7651-01 20 40735471 40735471 G A PTPRT Silent p.C1115C 0.19 TCGA-IB-7651-01 20 40739056 40739056 G A PTPRT Silent p.C1057C 0.14 TCGA-IB-7651-01 20 40748583 40748583 G A PTPRT Missense_Mutation p.A959V 0.17 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 20 40827933 40827933 G A PTPRT Missense_Mutation p.A813V 0.10 tolerated(0.1) benign(0.016) TCGA-IB-7651-01 20 40827959 40827959 G A PTPRT Silent p.A804A 0.20 TCGA-IB-7651-01 20 409726 409726 C T RBCK1 Silent p.R480R 0.19 TCGA-IB-7651-01 20 40980807 40980807 G A PTPRT Missense_Mutation p.T560I 0.19 deleterious(0) probably_damaging(0.98) TCGA-IB-7651-01 20 41420011 41420011 C T PTPRT Missense_Mutation p.D104N 0.20 tolerated(0.12) benign(0.058) TCGA-IB-7651-01 20 4168011 4168011 G A SMOX Missense_Mutation p.R542H 0.20 deleterious(0.05) benign(0.303) TCGA-IB-7651-01 20 42088725 42088725 G A SRSF6 Missense_Mutation p.R145Q 0.18 deleterious(0.01) probably_damaging(0.983) TCGA-IB-7651-01 20 42089353 42089353 C T SRSF6 Missense_Mutation p.R229W 0.21 deleterious(0) unknown(0) TCGA-IB-7651-01 20 42089579 42089579 C T SRSF6 Missense_Mutation p.P304L 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-IB-7651-01 20 42163582 42163582 G A L3MBTL1 Missense_Mutation p.G587R 0.18 tolerated(1) benign(0.002) TCGA-IB-7651-01 20 42208675 42208675 C T SGK2 Silent p.L365L 0.16 TCGA-IB-7651-01 20 42233661 42233661 G A IFT52 Missense_Mutation p.G145R 0.15 tolerated(0.06) possibly_damaging(0.841) TCGA-IB-7651-01 20 42340139 42340139 G A MYBL2 Silent p.P539P 0.15 TCGA-IB-7651-01 20 42683124 42683124 C T TOX2 Silent p.I279I 0.21 TCGA-IB-7651-01 20 42683164 42683164 C T TOX2 Nonsense_Mutation p.Q293* 0.20 TCGA-IB-7651-01 20 42694624 42694624 C T TOX2 Silent p.H411H 0.18 TCGA-IB-7651-01 20 42695431 42695431 A G TOX2 Missense_Mutation p.N473S 0.18 tolerated(0.08) benign(0.01) TCGA-IB-7651-01 20 42744440 42744440 C T JPH2 Silent p.K625K 0.17 TCGA-IB-7651-01 20 42788611 42788611 G A JPH2 Silent p.G272G 0.19 TCGA-IB-7651-01 20 42907813 42907813 T A GDAP1L1 Missense_Mutation p.V326D 0.23 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 20 42935305 42935305 C A FITM2 Missense_Mutation p.S250I 0.15 tolerated(0.14) benign(0.005) TCGA-IB-7651-01 20 43117903 43117903 G A TTPAL Splice_Site p.X251_splice 0.16 TCGA-IB-7651-01 20 43133515 43133515 G A SERINC3 Silent p.S267S 0.17 TCGA-IB-7651-01 20 43353497 43353497 G A WISP2 Silent p.P132P 0.26 TCGA-IB-7651-01 20 43386371 43386371 C T RIMS4 Missense_Mutation p.E132K 0.16 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-IB-7651-01 20 43530459 43530459 C T YWHAB Silent p.I95I 0.17 TCGA-IB-7651-01 20 43577463 43577463 C A TOMM34 Missense_Mutation p.E202D 0.18 tolerated(0.58) benign(0.012) TCGA-IB-7651-01 20 43727300 43727300 C T KCNS1 Missense_Mutation p.G38D 0.14 tolerated(0.55) benign(0.024) TCGA-IB-7651-01 20 43933168 43933168 G T MATN4 Missense_Mutation p.L115M 0.23 probably_damaging(0.999) TCGA-IB-7651-01 20 43944880 43944880 C T RBPJL Silent p.C358C 0.12 TCGA-IB-7651-01 20 43959025 43959025 C A SDC4 Missense_Mutation p.E142D 0.21 deleterious(0.04) possibly_damaging(0.725) TCGA-IB-7651-01 20 43959167 43959167 G T SDC4 Missense_Mutation p.S95Y 0.17 deleterious(0.01) possibly_damaging(0.515) TCGA-IB-7651-01 20 44004154 44004158 TCATT GC TP53TG5 In_Frame_Del p.N97_E98delinsA 0.17 TCGA-IB-7651-01 20 44037151 44037151 G A DBNDD2 Missense_Mutation p.R117H 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-IB-7651-01 20 44405742 44405742 G A WFDC3 Silent p.G155G 0.20 TCGA-IB-7651-01 20 44430041 44430041 C T DNTTIP1 Missense_Mutation p.R148C 0.17 tolerated(0.05) benign(0.055) TCGA-IB-7651-01 20 44452970 44452970 C A TNNC2 Missense_Mutation p.S92I 0.17 deleterious(0) benign(0.272) TCGA-IB-7651-01 20 44463645 44463645 C T SNX21 Missense_Mutation p.R113W 0.16 deleterious(0) probably_damaging(0.983) TCGA-IB-7651-01 20 44470059 44470059 G A SNX21 3'UTR 0.15 TCGA-IB-7651-01 20 44470465 44470465 T G ACOT8 3'UTR 0.15 TCGA-IB-7651-01 20 44472193 44472193 G T ACOT8 Missense_Mutation p.L272I 0.13 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 20 44472353 44472353 G A ACOT8 Silent p.G218G 0.18 TCGA-IB-7651-01 20 44515471 44515471 C T SPATA25 Silent p.R123R 0.18 TCGA-IB-7651-01 20 44517395 44517395 C T NEURL2 3'UTR 0.17 TCGA-IB-7651-01 20 44519145 44519145 G A NEURL2 Silent p.R162R 0.19 TCGA-IB-7651-01 20 44521862 44521862 C T CTSA Silent p.L220L 0.17 TCGA-IB-7651-01 20 44528125 44528125 C T PLTP Silent p.V445V 0.17 TCGA-IB-7651-01 20 44540205 44540205 T C PLTP 5'UTR 0.21 TCGA-IB-7651-01 20 44574362 44574362 C T PCIF1 Missense_Mutation p.A394V 0.16 tolerated(0.59) benign(0.001) TCGA-IB-7651-01 20 44582471 44582471 G A ZNF335 Silent p.G853G 0.19 TCGA-IB-7651-01 20 44588995 44588995 C A ZNF335 Missense_Mutation p.E624D 0.14 tolerated(0.16) probably_damaging(0.955) TCGA-IB-7651-01 20 44592534 44592534 G T ZNF335 Missense_Mutation p.L400M 0.10 tolerated(0.14) benign(0.221) TCGA-IB-7651-01 20 44599953 44599953 C A ZNF335 Nonsense_Mutation p.E33* 0.21 TCGA-IB-7651-01 20 44641175 44641176 - C MMP9 Frame_Shift_Ins p.H432Afs*2 0.19 TCGA-IB-7651-01 20 44644913 44644913 G A MMP9 Missense_Mutation p.R677H 0.05 tolerated(0.16) benign(0.011) TCGA-IB-7651-01 20 44669988 44669988 G A SLC12A5 Missense_Mutation p.R315H 0.18 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 20 44671916 44671916 C A SLC12A5 Silent p.T420T 0.17 TCGA-IB-7651-01 20 44699120 44699120 G A NCOA5 Nonsense_Mutation p.R32* 0.19 TCGA-IB-7651-01 20 44757788 44757788 C T CD40 3'UTR 0.19 TCGA-IB-7651-01 20 44803650 44803650 T C CDH22 Missense_Mutation p.E661G 0.16 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 20 44815312 44815312 G A CDH22 Silent p.D526D 0.22 TCGA-IB-7651-01 20 44815474 44815474 C T CDH22 Silent p.K512K 0.04 TCGA-IB-7651-01 20 44845469 44845469 C T CDH22 Silent p.P278P 0.17 TCGA-IB-7651-01 20 45022235 45022235 G A ELMO2 Missense_Mutation p.S42L 0.18 deleterious(0.02) benign(0.279) TCGA-IB-7651-01 20 45131661 45131661 T G ZNF334 Missense_Mutation p.K106T 0.18 tolerated(0.05) benign(0.005) TCGA-IB-7651-01 20 45188796 45188796 C T SLC13A3 Silent p.L558L 0.15 TCGA-IB-7651-01 20 45192140 45192140 G A SLC13A3 Silent p.V515V 0.21 TCGA-IB-7651-01 20 45353838 45353838 C T SLC2A10 Missense_Mutation p.L55F 0.18 deleterious(0) possibly_damaging(0.882) TCGA-IB-7651-01 20 45354819 45354819 G A SLC2A10 Missense_Mutation p.D382N 0.13 tolerated(0.54) benign(0.001) TCGA-IB-7651-01 20 45633697 45633697 C T EYA2 Missense_Mutation p.A91V 0.14 deleterious(0) possibly_damaging(0.799) TCGA-IB-7651-01 20 45849995 45849995 C T ZMYND8 Silent p.T1083T 0.19 TCGA-IB-7651-01 20 45856021 45856021 G A ZMYND8 Missense_Mutation p.R935C 0.15 deleterious(0) probably_damaging(0.969) TCGA-IB-7651-01 20 45867626 45867626 C T ZMYND8 Intron 0.16 TCGA-IB-7651-01 20 45874915 45874915 C A ZMYND8 Missense_Mutation p.K707N 0.08 deleterious_low_confidence(0.01) benign(0.425) TCGA-IB-7651-01 20 46252654 46252654 G T NCOA3 Splice_Site p.X28_splice 0.15 TCGA-IB-7651-01 20 46262300 46262300 A T NCOA3 Missense_Mutation p.D295V 0.22 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 20 46264680 46264680 G T NCOA3 Missense_Mutation p.S517I 0.17 deleterious(0) benign(0.273) TCGA-IB-7651-01 20 46264735 46264735 T G NCOA3 Silent p.T535T 0.18 TCGA-IB-7651-01 20 46277853 46277853 G A NCOA3 Silent p.Q1217Q 0.15 TCGA-IB-7651-01 20 46365517 46365517 C T SULF2 Silent p.S115S 0.19 TCGA-IB-7651-01 20 4680520 4680520 C T PRNP Silent p.Y218Y 0.18 TCGA-IB-7651-01 20 4705663 4705663 C T PRND Missense_Mutation p.R156W 0.06 deleterious_low_confidence(0.04) probably_damaging(0.965) TCGA-IB-7651-01 20 47269916 47269916 G A PREX1 Missense_Mutation p.R777W 0.17 deleterious(0) possibly_damaging(0.453) TCGA-IB-7651-01 20 47274755 47274755 C T PREX1 Silent p.Q631Q 0.22 TCGA-IB-7651-01 20 47297832 47297832 T G PREX1 Missense_Mutation p.K459T 0.16 tolerated(0.21) possibly_damaging(0.72) TCGA-IB-7651-01 20 47324875 47324875 T C PREX1 Missense_Mutation p.N236D 0.04 tolerated(0.06) probably_damaging(0.999) TCGA-IB-7651-01 20 47361598 47361598 C A PREX1 Missense_Mutation p.Q126H 0.05 tolerated(0.28) benign(0.232) TCGA-IB-7651-01 20 47582460 47582460 T C ARFGEF2 Missense_Mutation p.L320P 0.20 tolerated(0.27) benign(0.002) TCGA-IB-7651-01 20 47601357 47601357 C T ARFGEF2 Nonsense_Mutation p.Q684* 0.22 TCGA-IB-7651-01 20 47628603 47628603 C T ARFGEF2 Silent p.Y1300Y 0.06 TCGA-IB-7651-01 20 47691952 47691952 T G CSE1L Missense_Mutation p.N410K 0.21 tolerated(0.45) benign(0.016) TCGA-IB-7651-01 20 47734381 47734381 A G STAU1 Missense_Mutation p.V481A 0.19 tolerated(0.76) benign(0.002) TCGA-IB-7651-01 20 47768165 47768165 T G STAU1 Missense_Mutation p.K155T 0.16 deleterious(0) possibly_damaging(0.833) TCGA-IB-7651-01 20 47836014 47836014 C A DDX27 Missense_Mutation p.T41N 0.11 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 20 478425 478425 C A CSNK2A1 Splice_Site p.X123_splice 0.15 TCGA-IB-7651-01 20 47865209 47865209 C T ZNFX1 Missense_Mutation p.S1451N 0.20 tolerated(0.17) benign(0.004) TCGA-IB-7651-01 20 47991499 47991499 C T KCNB1 Missense_Mutation p.V200I 0.20 tolerated(0.3) benign(0.038) TCGA-IB-7651-01 20 48164483 48164483 C T PTGIS Missense_Mutation p.R91H 0.17 deleterious(0.02) benign(0.019) TCGA-IB-7651-01 20 48252915 48252915 G A B4GALT5 Silent p.Y367Y 0.17 TCGA-IB-7651-01 20 48259054 48259054 G T B4GALT5 Missense_Mutation p.P186H 0.13 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 20 48260145 48260145 T C B4GALT5 Missense_Mutation p.Y136C 0.21 tolerated(0.06) benign(0.02) TCGA-IB-7651-01 20 4855240 4855240 C T SLC23A2 Silent p.Q309Q 0.17 TCGA-IB-7651-01 20 49214249 49214249 T G FAM65C Splice_Site p.X550_splice 0.18 TCGA-IB-7651-01 20 49508536 49508536 G A ADNP Silent p.N905N 0.10 TCGA-IB-7651-01 20 49509662 49509662 T C ADNP Missense_Mutation p.H530R 0.19 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 20 49510697 49510697 T C ADNP Missense_Mutation p.Y185C 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 20 49575496 49575496 G A MOCS3 Silent p.Q39Q 0.07 TCGA-IB-7651-01 20 50048864 50048864 C T NFATC2 Missense_Mutation p.R821H 0.10 tolerated(0.1) probably_damaging(0.972) TCGA-IB-7651-01 20 50071220 50071220 G A NFATC2 Nonsense_Mutation p.R572* 0.08 TCGA-IB-7651-01 20 50235228 50235228 G A ATP9A Missense_Mutation p.R775C 0.20 deleterious(0.03) possibly_damaging(0.892) TCGA-IB-7651-01 20 50305609 50305609 C T ATP9A Missense_Mutation p.A265T 0.08 deleterious(0.01) possibly_damaging(0.863) TCGA-IB-7651-01 20 50310575 50310575 G A ATP9A Missense_Mutation p.A205V 0.19 tolerated(0.09) benign(0.063) TCGA-IB-7651-01 20 50329607 50329607 C T ATP9A Missense_Mutation p.V112M 0.13 deleterious(0) probably_damaging(0.98) TCGA-IB-7651-01 20 50405478 50405478 G A SALL4 Silent p.H888H 0.18 TCGA-IB-7651-01 20 50405543 50405543 C T SALL4 Missense_Mutation p.A867T 0.17 tolerated(0.43) benign(0.162) TCGA-IB-7651-01 20 50406636 50406636 C T SALL4 Missense_Mutation p.E796K 0.19 deleterious(0.01) possibly_damaging(0.517) TCGA-IB-7651-01 20 50406812 50406812 C T SALL4 Missense_Mutation p.G737D 0.09 tolerated(0.41) possibly_damaging(0.847) TCGA-IB-7651-01 20 50408810 50408810 G A SALL4 Missense_Mutation p.T71M 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 20 50701282 50701282 G T ZFP64 Silent p.T584T 0.15 TCGA-IB-7651-01 20 50769195 50769195 G A ZFP64 Silent p.V512V 0.15 TCGA-IB-7651-01 20 50782534 50782534 C T ZFP64 Missense_Mutation p.G106D 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-IB-7651-01 20 51870294 51870294 C T TSHZ2 Silent p.C99C 0.17 TCGA-IB-7651-01 20 51870871 51870871 G A TSHZ2 Missense_Mutation p.V292I 0.19 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 20 51871469 51871469 C A TSHZ2 Missense_Mutation p.P491H 0.05 tolerated(0.08) probably_damaging(0.962) TCGA-IB-7651-01 20 51871966 51871966 C A TSHZ2 Missense_Mutation p.L657M 0.16 tolerated(0.1) benign(0.173) TCGA-IB-7651-01 20 52192497 52192497 A G ZNF217 Missense_Mutation p.Y936H 0.18 tolerated(0.41) possibly_damaging(0.73) TCGA-IB-7651-01 20 52192856 52192856 C T ZNF217 Missense_Mutation p.S816N 0.18 tolerated(0.05) benign(0.21) TCGA-IB-7651-01 20 52198796 52198796 T G ZNF217 Missense_Mutation p.Q190H 0.05 deleterious(0.01) probably_damaging(0.927) TCGA-IB-7651-01 20 52198924 52198924 T G ZNF217 Silent p.R148R 0.19 TCGA-IB-7651-01 20 52609048 52609048 G A BCAS1 Intron 0.10 TCGA-IB-7651-01 20 52788203 52788203 C T CYP24A1 Silent p.G152G 0.16 TCGA-IB-7651-01 20 52788291 52788291 G A CYP24A1 Intron 0.24 TCGA-IB-7651-01 20 5283374 5283374 G A PROKR2 Missense_Mutation p.A156V 0.19 tolerated(0.58) benign(0.009) TCGA-IB-7651-01 20 53208230 53208230 A C DOK5 Missense_Mutation p.E162A 0.19 deleterious(0.01) possibly_damaging(0.869) TCGA-IB-7651-01 20 53227033 53227033 C T DOK5 Missense_Mutation p.R236C 0.16 deleterious(0) probably_damaging(0.915) TCGA-IB-7651-01 20 53260055 53260055 G A DOK5 Missense_Mutation p.R265H 0.20 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-IB-7651-01 20 54575785 54575785 A G CBLN4 Splice_Site p.X136_splice 0.17 TCGA-IB-7651-01 20 54579107 54579107 G T CBLN4 Missense_Mutation p.L41M 0.15 deleterious(0) benign(0.391) TCGA-IB-7651-01 20 54824572 54824572 C T MC3R Missense_Mutation p.P225S 0.19 tolerated(0.11) probably_damaging(1) TCGA-IB-7651-01 20 54945360 54945360 C T AURKA Missense_Mutation p.A356T 0.18 deleterious(0) probably_damaging(0.966) TCGA-IB-7651-01 20 54987486 54987486 G A CASS4 5'UTR 0.09 TCGA-IB-7651-01 20 55027901 55027901 G T CASS4 Missense_Mutation p.D557Y 0.08 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 20 55206408 55206408 C T TFAP2C Nonsense_Mutation p.Q66* 0.20 TCGA-IB-7651-01 20 5539456 5539456 T C GPCPD1 Silent p.Q514Q 0.19 TCGA-IB-7651-01 20 55746142 55746142 G A BMP7 Missense_Mutation p.T390M 0.19 tolerated(0.19) probably_damaging(0.96) TCGA-IB-7651-01 20 56073454 56073454 C A CTCFL Intron 0.19 TCGA-IB-7651-01 20 56139438 56139438 G T PCK1 Missense_Mutation p.S392I 0.18 tolerated(0.06) benign(0.002) TCGA-IB-7651-01 20 56139544 56139544 C T PCK1 Missense_Mutation p.P398L 0.19 tolerated(0.07) benign(0.116) TCGA-IB-7651-01 20 56227286 56227286 C A PMEPA1 Silent p.P229P 0.21 TCGA-IB-7651-01 20 56227303 56227303 G A PMEPA1 Missense_Mutation p.R224C 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 20 56227318 56227318 A T PMEPA1 Missense_Mutation p.Y219N 0.21 tolerated_low_confidence(0.23) probably_damaging(0.999) TCGA-IB-7651-01 20 56227521 56227521 G A PMEPA1 Missense_Mutation p.S151L 0.24 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 20 57016098 57016098 G A VAPB Missense_Mutation p.G178S 0.17 tolerated(0.74) benign(0.002) TCGA-IB-7651-01 20 57036492 57036492 G A APCDD1L Missense_Mutation p.S287L 0.18 tolerated(0.32) benign(0.091) TCGA-IB-7651-01 20 57248758 57248758 G A STX16 Silent p.Q288Q 0.16 TCGA-IB-7651-01 20 57415518 57415518 C T RP4-806M20.3 5'Flank 0.17 TCGA-IB-7651-01 20 57415547 57415547 C A RP4-806M20.3 5'Flank 0.17 TCGA-IB-7651-01 20 57429152 57429152 C T GNAS Missense_Mutation p.P278S 0.14 tolerated_low_confidence(0.18) unknown(0) TCGA-IB-7651-01 20 57429164 57429164 G T GNAS Missense_Mutation p.G282C 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-IB-7651-01 20 57484236 57484236 G A GNAS Missense_Mutation p.V827M 0.04 deleterious(0.01) probably_damaging(0.988) TCGA-IB-7651-01 20 57485920 57485920 A G GNAS 3'UTR 0.21 TCGA-IB-7651-01 20 57566038 57566038 G A NELFCD Missense_Mutation p.G306R 0.22 tolerated(0.38) possibly_damaging(0.793) TCGA-IB-7651-01 20 57567047 57567047 G T NELFCD Nonsense_Mutation p.E419* 0.15 TCGA-IB-7651-01 20 57598802 57598802 C T TUBB1 Missense_Mutation p.T107M 0.22 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-IB-7651-01 20 57598897 57598897 C A TUBB1 Missense_Mutation p.L139M 0.20 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-IB-7651-01 20 57599572 57599572 G A TUBB1 Missense_Mutation p.A364T 0.22 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-IB-7651-01 20 57766263 57766263 C T ZNF831 Silent p.Y63Y 0.18 TCGA-IB-7651-01 20 57766678 57766678 C A ZNF831 Missense_Mutation p.L202M 0.18 deleterious(0.01) possibly_damaging(0.897) TCGA-IB-7651-01 20 57766948 57766948 G T ZNF831 Missense_Mutation p.A292S 0.18 tolerated(0.4) benign(0.071) TCGA-IB-7651-01 20 57767471 57767471 C T ZNF831 Missense_Mutation p.A466V 0.18 deleterious(0.02) possibly_damaging(0.588) TCGA-IB-7651-01 20 57829178 57829178 C T ZNF831 Missense_Mutation p.P1472S 0.16 tolerated(0.08) benign(0.141) TCGA-IB-7651-01 20 57829317 57829317 A G ZNF831 Missense_Mutation p.Q1518R 0.16 tolerated(0.45) benign(0.001) TCGA-IB-7651-01 20 57899506 57899506 G A EDN3 Missense_Mutation p.A237T 0.19 tolerated_low_confidence(0.24) benign(0.001) TCGA-IB-7651-01 20 58439413 58439413 C T SYCP2 Missense_Mutation p.E1516K 0.09 deleterious(0) benign(0.037) TCGA-IB-7651-01 20 58439431 58439431 G A SYCP2 Missense_Mutation p.L1510F 0.11 deleterious(0) probably_damaging(0.967) TCGA-IB-7651-01 20 5844104 5844104 C A C20orf196 Missense_Mutation p.L205M 0.18 deleterious_low_confidence(0.05) probably_damaging(0.979) TCGA-IB-7651-01 20 58441414 58441414 G A SYCP2 Silent p.I1418I 0.16 TCGA-IB-7651-01 20 58441580 58441580 C T SYCP2 Missense_Mutation p.R1397K 0.15 tolerated(1) benign(0) TCGA-IB-7651-01 20 58476773 58476773 C T SYCP2 Missense_Mutation p.A376T 0.16 tolerated(0.28) benign(0.061) TCGA-IB-7651-01 20 58514512 58514512 A C PPP1R3D Missense_Mutation p.F159V 0.21 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 20 58562651 58562651 G A CDH26 Silent p.S327S 0.18 TCGA-IB-7651-01 20 58569416 58569416 C T CDH26 Missense_Mutation p.A513V 0.17 tolerated(0.1) benign(0.441) TCGA-IB-7651-01 20 58569448 58569448 G A CDH26 Missense_Mutation p.D524N 0.06 deleterious(0.01) probably_damaging(0.988) TCGA-IB-7651-01 20 58569449 58569449 A C CDH26 Missense_Mutation p.D524A 0.12 deleterious(0.01) probably_damaging(0.967) TCGA-IB-7651-01 20 58587641 58587641 C T CDH26 Silent p.S785S 0.19 TCGA-IB-7651-01 20 58644899 58644899 G T C20orf197 5'UTR 0.12 TCGA-IB-7651-01 20 5927132 5927132 C T TRMT6 Missense_Mutation p.G59D 0.07 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 20 5933149 5933149 A C MCM8 Missense_Mutation p.K76N 0.19 tolerated(0.07) benign(0.017) TCGA-IB-7651-01 20 6022592 6022592 C T LRRN4 Silent p.T433T 0.20 TCGA-IB-7651-01 20 60498707 60498707 G A CDH4 Missense_Mutation p.V525M 0.25 tolerated(0.23) benign(0.01) TCGA-IB-7651-01 20 60504709 60504709 C T CDH4 Missense_Mutation p.A683V 0.06 tolerated(0.35) benign(0.009) TCGA-IB-7651-01 20 60575234 60575234 C A TAF4 Missense_Mutation p.Q911H 0.16 probably_damaging(0.994) TCGA-IB-7651-01 20 60581569 60581569 C T TAF4 Silent p.P740P 0.10 TCGA-IB-7651-01 20 60585189 60585189 C T TAF4 Silent p.T558T 0.13 TCGA-IB-7651-01 20 60768660 60768660 C T MTG2 Silent p.L62L 0.20 TCGA-IB-7651-01 20 6077578 6077578 G A FERMT1 Silent p.L354L 0.19 TCGA-IB-7651-01 20 60861650 60861650 C T OSBPL2 Silent p.S336S 0.18 TCGA-IB-7651-01 20 60864297 60864297 A G OSBPL2 Missense_Mutation p.N387S 0.11 deleterious(0) probably_damaging(0.946) TCGA-IB-7651-01 20 60893902 60893902 T G LAMA5 Silent p.R2347R 0.15 TCGA-IB-7651-01 20 60895841 60895841 G T LAMA5 Missense_Mutation p.A2201D 0.18 possibly_damaging(0.747) TCGA-IB-7651-01 20 60900582 60900582 C T LAMA5 Silent p.E1773E 0.13 TCGA-IB-7651-01 20 60903983 60903983 C T LAMA5 Missense_Mutation p.G1455D 0.21 benign(0.059) TCGA-IB-7651-01 20 60906108 60906108 G A LAMA5 Silent p.H1210H 0.21 TCGA-IB-7651-01 20 6091159 6091159 C A FERMT1 Splice_Site p.X178_splice 0.22 TCGA-IB-7651-01 20 60913186 60913186 C A LAMA5 Nonsense_Mutation p.G593* 0.21 TCGA-IB-7651-01 20 60921612 60921612 C T LAMA5 Missense_Mutation p.G411D 0.12 probably_damaging(0.998) TCGA-IB-7651-01 20 60922054 60922054 G A LAMA5 Silent p.C329C 0.17 TCGA-IB-7651-01 20 60926993 60926993 G A LAMA5 Missense_Mutation p.A277V 0.22 probably_damaging(0.961) TCGA-IB-7651-01 20 60927304 60927304 G A LAMA5 Silent p.N227N 0.27 TCGA-IB-7651-01 20 61303134 61303134 C T SLCO4A1 Silent p.C686C 0.08 TCGA-IB-7651-01 20 61443875 61443875 C T OGFR Missense_Mutation p.P303L 0.21 tolerated(0.16) benign(0.001) TCGA-IB-7651-01 20 61488887 61488887 G A TCFL5 Silent p.G366G 0.19 TCGA-IB-7651-01 20 61511392 61511392 G A DIDO1 Silent p.V1972V 0.17 TCGA-IB-7651-01 20 61512121 61512121 G A DIDO1 Silent p.P1729P 0.20 TCGA-IB-7651-01 20 61512142 61512142 G A DIDO1 Silent p.D1722D 0.17 TCGA-IB-7651-01 20 61513253 61513253 T C DIDO1 Missense_Mutation p.D1352G 0.19 benign(0.002) TCGA-IB-7651-01 20 61513636 61513636 G A DIDO1 Silent p.D1224D 0.21 TCGA-IB-7651-01 20 61522306 61522306 G A DIDO1 Intron 0.19 TCGA-IB-7651-01 20 61525063 61525063 G A DIDO1 Missense_Mutation p.S1019F 0.21 probably_damaging(0.959) TCGA-IB-7651-01 20 61525105 61525105 G T DIDO1 Missense_Mutation p.S1005Y 0.18 possibly_damaging(0.804) TCGA-IB-7651-01 20 61528081 61528081 G A DIDO1 Missense_Mutation p.A619V 0.19 benign(0.001) TCGA-IB-7651-01 20 61541345 61541345 T A DIDO1 Missense_Mutation p.E289D 0.21 possibly_damaging(0.908) TCGA-IB-7651-01 20 61542332 61542332 G A DIDO1 Silent p.G211G 0.17 TCGA-IB-7651-01 20 61542497 61542497 G A DIDO1 Silent p.S156S 0.22 TCGA-IB-7651-01 20 61542721 61542721 G A DIDO1 Missense_Mutation p.R82W 0.20 probably_damaging(0.999) TCGA-IB-7651-01 20 61594714 61594714 G A SLC17A9 Missense_Mutation p.A240T 0.16 tolerated(0.06) benign(0.297) TCGA-IB-7651-01 20 61598818 61598818 G T SLC17A9 Missense_Mutation p.R426M 0.10 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 20 61637625 61637625 G T BHLHE23 Missense_Mutation p.L152I 0.14 deleterious(0.03) possibly_damaging(0.672) TCGA-IB-7651-01 20 61834989 61834989 G A YTHDF1 Silent p.H101H 0.18 TCGA-IB-7651-01 20 61907992 61907992 T G ARFGAP1 Missense_Mutation p.F111V 0.18 deleterious(0) probably_damaging(0.927) TCGA-IB-7651-01 20 61912699 61912699 C T ARFGAP1 Silent p.G228G 0.17 TCGA-IB-7651-01 20 61926468 61926468 C T COL20A1 Silent p.S3S 0.18 TCGA-IB-7651-01 20 61958146 61958146 C T COL20A1 Nonsense_Mutation p.R1167* 0.17 TCGA-IB-7651-01 20 61958155 61958155 C A COL20A1 Missense_Mutation p.P1170T 0.16 tolerated(0.07) possibly_damaging(0.9) TCGA-IB-7651-01 20 61981304 61981304 G A CHRNA4 Missense_Mutation p.R487W 0.21 deleterious_low_confidence(0.01) benign(0.043) TCGA-IB-7651-01 20 61981707 61981707 C T CHRNA4 Silent p.V352V 0.20 TCGA-IB-7651-01 20 61981955 61981955 C T CHRNA4 Missense_Mutation p.E270K 0.17 deleterious(0) possibly_damaging(0.512) TCGA-IB-7651-01 20 62046315 62046315 C T KCNQ2 Missense_Mutation p.R489H 0.19 deleterious(0.01) benign(0.124) TCGA-IB-7651-01 20 62065214 62065214 G T KCNQ2 Missense_Mutation p.L356M 0.19 deleterious(0) possibly_damaging(0.893) TCGA-IB-7651-01 20 62070950 62070950 C T KCNQ2 Splice_Site p.X309_splice 0.14 TCGA-IB-7651-01 20 62070995 62070995 C T KCNQ2 Missense_Mutation p.A295T 0.17 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 20 62164956 62164956 G A PTK6 Silent p.F206F 0.15 TCGA-IB-7651-01 20 62166298 62166298 G A PTK6 Silent p.V115V 0.26 TCGA-IB-7651-01 20 62172627 62172627 C T SRMS Missense_Mutation p.R401H 0.17 tolerated(0.8) benign(0.007) TCGA-IB-7651-01 20 62178549 62178549 C T SRMS Missense_Mutation p.A90T 0.21 deleterious(0.01) benign(0.135) TCGA-IB-7651-01 20 62178609 62178609 G T SRMS Missense_Mutation p.L70M 0.21 deleterious(0) probably_damaging(0.974) TCGA-IB-7651-01 20 62187575 62187575 C T C20orf195 Missense_Mutation p.R187C 0.19 deleterious(0.04) probably_damaging(0.958) TCGA-IB-7651-01 20 62187886 62187886 G A C20orf195 Silent p.T290T 0.10 TCGA-IB-7651-01 20 62193938 62193938 C T HELZ2 Silent p.P2079P 0.14 TCGA-IB-7651-01 20 62194310 62194310 G A HELZ2 Silent p.T1955T 0.24 TCGA-IB-7651-01 20 62194454 62194454 C T HELZ2 Silent p.P1907P 0.18 TCGA-IB-7651-01 20 62195237 62195237 C T HELZ2 Silent p.A1646A 0.17 TCGA-IB-7651-01 20 62200677 62200677 G A HELZ2 Silent p.G304G 0.21 TCGA-IB-7651-01 20 62321794 62321794 G A RTEL1 Missense_Mutation p.G829R 0.17 deleterious(0.05) probably_damaging(0.92) TCGA-IB-7651-01 20 62372827 62372827 G A SLC2A4RG Missense_Mutation p.S129N 0.13 tolerated(0.07) possibly_damaging(0.628) TCGA-IB-7651-01 20 62407098 62407098 G A ZBTB46 Silent p.A385A 0.20 TCGA-IB-7651-01 20 62421293 62421293 C T ZBTB46 Missense_Mutation p.R273Q 0.19 tolerated(0.28) probably_damaging(0.995) TCGA-IB-7651-01 20 62493574 62493574 C T ABHD16B Silent p.V227V 0.15 TCGA-IB-7651-01 20 62514152 62514152 G A TPD52L2 Missense_Mutation p.S152N 0.17 deleterious(0.01) possibly_damaging(0.639) TCGA-IB-7651-01 20 62560750 62560750 G A DNAJC5 Missense_Mutation p.A65T 0.22 tolerated(0.23) benign(0.023) TCGA-IB-7651-01 20 62560765 62560765 G A DNAJC5 Missense_Mutation p.A70T 0.18 tolerated(0.48) benign(0.009) TCGA-IB-7651-01 20 62592748 62592748 C T ZNF512B Missense_Mutation p.A781T 0.08 deleterious(0.04) benign(0.044) TCGA-IB-7651-01 20 62594982 62594982 G A ZNF512B Missense_Mutation p.H563Y 0.07 deleterious(0) probably_damaging(0.98) TCGA-IB-7651-01 20 62595140 62595140 A T ZNF512B Splice_Site p.X535_splice 0.19 TCGA-IB-7651-01 20 62597563 62597563 T G ZNF512B Missense_Mutation p.K322T 0.17 tolerated_low_confidence(0.09) probably_damaging(0.997) TCGA-IB-7651-01 20 62598231 62598231 C A ZNF512B Missense_Mutation p.G131W 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 20 62701711 62701711 C T TCEA2 Missense_Mutation p.R206W 0.19 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 20 62703551 62703551 C A TCEA2 3'UTR 0.05 TCGA-IB-7651-01 20 62705215 62705215 G A RGS19 Silent p.S215S 0.15 TCGA-IB-7651-01 20 62729775 62729775 C T OPRL1 Missense_Mutation p.R246C 0.18 deleterious(0.02) probably_damaging(1) TCGA-IB-7651-01 20 62837056 62837056 G T MYT1 Missense_Mutation p.K100N 0.10 benign(0.004) TCGA-IB-7651-01 20 62838959 62838959 T C MYT1 Missense_Mutation p.V137A 0.19 benign(0) TCGA-IB-7651-01 20 62839313 62839313 T C MYT1 Missense_Mutation p.L255P 0.13 benign(0.124) TCGA-IB-7651-01 20 62843485 62843485 A G MYT1 Missense_Mutation p.H504R 0.20 probably_damaging(0.999) TCGA-IB-7651-01 20 62848447 62848447 G A MYT1 Silent p.E553E 0.16 TCGA-IB-7651-01 20 62850260 62850260 G A MYT1 Intron 0.21 TCGA-IB-7651-01 20 62859375 62859375 C T MYT1 Intron 0.20 TCGA-IB-7651-01 20 62863731 62863731 C T MYT1 Missense_Mutation p.H964Y 0.19 probably_damaging(0.999) TCGA-IB-7651-01 20 62868708 62868708 G A MYT1 Missense_Mutation p.E1020K 0.17 probably_damaging(0.995) TCGA-IB-7651-01 20 62871223 62871223 C T MYT1 Silent p.I1068I 0.17 TCGA-IB-7651-01 20 62895791 62895791 G A PCMTD2 Missense_Mutation p.G106D 0.17 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 20 62899295 62899295 C A PCMTD2 Missense_Mutation p.A213D 0.20 tolerated(0.42) benign(0.058) TCGA-IB-7651-01 20 644759 644759 G A SCRT2 Silent p.C160C 0.18 TCGA-IB-7651-01 20 6750998 6750999 - C BMP2 Frame_Shift_Ins p.Y78Lfs*38 0.20 TCGA-IB-7651-01 20 7886939 7886939 G A HAO1 Missense_Mutation p.P195S 0.17 tolerated(0.83) benign(0) TCGA-IB-7651-01 20 7962940 7962940 G T TMX4 Silent p.S336S 0.19 TCGA-IB-7651-01 20 7963119 7963119 C T TMX4 Missense_Mutation p.E277K 0.18 deleterious(0.02) benign(0.339) TCGA-IB-7651-01 20 7963222 7963222 C A TMX4 Missense_Mutation p.Q242H 0.19 deleterious(0.02) possibly_damaging(0.77) TCGA-IB-7651-01 20 8113379 8113379 A C PLCB1 Missense_Mutation p.K27N 0.18 tolerated(0.14) benign(0.002) TCGA-IB-7651-01 20 9389787 9389787 A G PLCB4 Missense_Mutation p.N641S 0.21 deleterious(0) benign(0.315) TCGA-IB-7651-01 20 9404500 9404500 C T PLCB4 Nonsense_Mutation p.R797* 0.16 TCGA-IB-7651-01 20 944697 944697 G A RSPO4 Missense_Mutation p.S159L 0.24 tolerated(0.5) benign(0.004) TCGA-IB-7651-01 20 9459700 9459700 C T PLCB4 3'UTR 0.19 TCGA-IB-7651-01 20 9538310 9538310 C A PAK7 Missense_Mutation p.G563V 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 20 9546846 9546846 C T PAK7 Silent p.S392S 0.20 TCGA-IB-7651-01 21 10862899 10862899 G A IGHV1OR21-1 Silent p.E65E 0.07 TCGA-IB-7651-01 21 10973777 10973777 C A TPTE Splice_Site 0.06 TCGA-IB-7651-01 21 10996056 10996056 C T TPTE RNA 0.11 TCGA-IB-7651-01 21 10996106 10996106 C T TPTE RNA 0.09 TCGA-IB-7651-01 21 11021179 11021179 A C BAGE2 RNA 0.05 TCGA-IB-7651-01 21 11039050 11039050 C A BAGE2 RNA 0.03 TCGA-IB-7651-01 21 11049580 11049580 C A BAGE2 RNA 0.03 TCGA-IB-7651-01 21 15592002 15592002 G T RBM11 Missense_Mutation p.G72V 0.13 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 21 15747996 15747996 A G HSPA13 Missense_Mutation p.M242T 0.20 deleterious(0) benign(0.006) TCGA-IB-7651-01 21 15753528 15753528 A C HSPA13 Missense_Mutation p.F121C 0.23 deleterious(0) probably_damaging(0.985) TCGA-IB-7651-01 21 16339699 16339699 C T NRIP1 Missense_Mutation p.S272N 0.16 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 21 17181149 17181149 C T USP25 Missense_Mutation p.H268Y 0.16 deleterious(0) benign(0.415) TCGA-IB-7651-01 21 17181187 17181187 G A USP25 Missense_Mutation p.M280I 0.13 tolerated(0.21) benign(0.019) TCGA-IB-7651-01 21 17603377 17603377 T A LINC00478 Intron 0.15 TCGA-IB-7651-01 21 18981409 18981409 T C BTG3 Silent p.K18K 0.18 TCGA-IB-7651-01 21 19169392 19169392 G A C21orf91 Silent p.G57G 0.14 TCGA-IB-7651-01 21 19642312 19642312 C T TMPRSS15 Missense_Mutation p.E1012K 0.17 tolerated(0.08) benign(0.009) TCGA-IB-7651-01 21 19642342 19642342 C T TMPRSS15 Missense_Mutation p.G1002R 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 21 19666603 19666603 C T TMPRSS15 Missense_Mutation p.A824T 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 21 19755999 19755999 A G TMPRSS15 Silent p.N147N 0.06 TCGA-IB-7651-01 21 22658710 22658710 G A NCAM2 Silent p.E153E 0.15 TCGA-IB-7651-01 21 22664525 22664525 G T NCAM2 Nonsense_Mutation p.E195* 0.12 TCGA-IB-7651-01 21 22746295 22746295 T G NCAM2 Missense_Mutation p.I386S 0.13 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 21 22804437 22804437 C T NCAM2 Missense_Mutation p.S497F 0.14 deleterious(0) probably_damaging(0.96) TCGA-IB-7651-01 21 22840987 22840987 A G NCAM2 Silent p.E593E 0.12 TCGA-IB-7651-01 21 22849623 22849623 A C NCAM2 Missense_Mutation p.E636D 0.14 tolerated(0.13) probably_damaging(0.996) TCGA-IB-7651-01 21 22849626 22849626 C T NCAM2 Silent p.D637D 0.20 TCGA-IB-7651-01 21 27066137 27066137 C T JAM2 Missense_Mutation p.A104V 0.18 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 21 27071173 27071173 T C JAM2 Silent p.N193N 0.19 TCGA-IB-7651-01 21 27107264 27107264 C T ATP5J Translation_Start_Site p.M1? 0.18 deleterious_low_confidence(0) benign(0.216) TCGA-IB-7651-01 21 27136617 27136617 C T GABPA Missense_Mutation p.P300L 0.17 deleterious(0.01) possibly_damaging(0.739) TCGA-IB-7651-01 21 27141374 27141374 T G GABPA Missense_Mutation p.F399C 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 21 27354787 27354787 G T APP Missense_Mutation p.P365H 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 21 27394204 27394204 C T APP Missense_Mutation p.A273T 0.14 tolerated(0.39) unknown(0) TCGA-IB-7651-01 21 27840786 27840786 G A CYYR1 3'UTR 0.21 TCGA-IB-7651-01 21 28210028 28210028 C T ADAMTS1 Missense_Mutation p.G925E 0.18 deleterious(0.01) possibly_damaging(0.651) TCGA-IB-7651-01 21 28296425 28296425 G T ADAMTS5 Missense_Mutation p.P914T 0.21 tolerated(0.53) benign(0.002) TCGA-IB-7651-01 21 28302267 28302267 G A ADAMTS5 Silent p.C721C 0.20 TCGA-IB-7651-01 21 30338786 30338786 T G LTN1 Missense_Mutation p.K722T 0.17 tolerated(0.25) benign(0.031) TCGA-IB-7651-01 21 30359125 30359125 T G LTN1 Missense_Mutation p.D104A 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 21 30419159 30419159 G A USP16 Missense_Mutation p.V510I 0.09 tolerated(0.27) benign(0.007) TCGA-IB-7651-01 21 30419482 30419482 C A USP16 Missense_Mutation p.F617L 0.10 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 21 30426581 30426581 C T USP16 3'UTR 0.10 TCGA-IB-7651-01 21 30433572 30433572 A G CCT8 Splice_Site p.X483_splice 0.10 TCGA-IB-7651-01 21 30521531 30521531 C T MAP3K7CL Missense_Mutation p.S131F 0.17 tolerated(0.08) benign(0.012) TCGA-IB-7651-01 21 30698591 30698591 A G BACH1 Missense_Mutation p.H149R 0.09 tolerated(0.63) benign(0.001) TCGA-IB-7651-01 21 31538308 31538308 G A CLDN17 Nonsense_Mutation p.R210* 0.11 TCGA-IB-7651-01 21 31654660 31654660 G T KRTAP24-1 Missense_Mutation p.S197R 0.22 tolerated(0.18) benign(0.07) TCGA-IB-7651-01 21 31802628 31802628 C T KRTAP13-4 Missense_Mutation p.S12F 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-IB-7651-01 21 31812700 31812700 C A KRTAP15-1 Missense_Mutation p.L19M 0.09 deleterious(0.02) probably_damaging(1) TCGA-IB-7651-01 21 31812852 31812852 A C KRTAP15-1 Missense_Mutation p.R69S 0.10 tolerated(1) benign(0.185) TCGA-IB-7651-01 21 31869270 31869270 G T KRTAP19-4 Nonsense_Mutation p.C53* 0.08 TCGA-IB-7651-01 21 31913934 31913934 G A KRTAP19-6 3'UTR 0.10 TCGA-IB-7651-01 21 32127556 32127556 G T KRTAP21-1 Silent p.G47G 0.18 TCGA-IB-7651-01 21 32253481 32253481 G A KRTAP11-1 Silent p.C121C 0.22 TCGA-IB-7651-01 21 32410635 32410635 C T KRTAP19-8 Missense_Mutation p.G43D 0.09 deleterious_low_confidence(0) unknown(0) TCGA-IB-7651-01 21 32492816 32492816 C T TIAM1 Missense_Mutation p.R1549H 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.574) TCGA-IB-7651-01 21 32526607 32526607 C A TIAM1 Missense_Mutation p.K1043N 0.22 deleterious(0) possibly_damaging(0.834) TCGA-IB-7651-01 21 32537345 32537345 C T TIAM1 Silent p.E975E 0.16 TCGA-IB-7651-01 21 32624336 32624336 G A TIAM1 Missense_Mutation p.A378V 0.10 tolerated(0.27) benign(0.002) TCGA-IB-7651-01 21 33043863 33043863 C T SCAF4 Missense_Mutation p.S1098N 0.20 unknown(0) TCGA-IB-7651-01 21 33642728 33642728 C A MIS18A Missense_Mutation p.A172S 0.10 tolerated(0.43) benign(0.337) TCGA-IB-7651-01 21 33642777 33642777 C T MIS18A Silent p.T155T 0.13 TCGA-IB-7651-01 21 33651204 33651204 C T MIS18A Missense_Mutation p.R41H 0.12 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-IB-7651-01 21 33984442 33984442 G A C21orf59 Missense_Mutation p.R38W 0.19 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 21 34110549 34110549 G A PAXBP1 Nonsense_Mutation p.R806* 0.18 TCGA-IB-7651-01 21 34166106 34166106 G A C21orf62 Silent p.S209S 0.25 TCGA-IB-7651-01 21 34166516 34166516 G A C21orf62 Nonsense_Mutation p.R73* 0.05 TCGA-IB-7651-01 21 34619141 34619141 A C IFNAR2 Missense_Mutation p.S114R 0.18 tolerated(1) benign(0.011) TCGA-IB-7651-01 21 34635602 34635602 C T IFNAR2 Silent p.L449L 0.04 TCGA-IB-7651-01 21 34652146 34652146 G A IL10RB Missense_Mutation p.E141K 0.10 deleterious(0.02) benign(0.195) TCGA-IB-7651-01 21 34725173 34725173 G T IFNAR1 Missense_Mutation p.S418I 0.09 deleterious(0) probably_damaging(0.98) TCGA-IB-7651-01 21 34727821 34727821 A C IFNAR1 Missense_Mutation p.K547T 0.20 tolerated(0.08) possibly_damaging(0.477) TCGA-IB-7651-01 21 34823111 34823111 C T TMEM50B 3'UTR 0.12 TCGA-IB-7651-01 21 34861515 34861515 G T DNAJC28 Nonsense_Mutation p.C62* 0.09 TCGA-IB-7651-01 21 34923064 34923064 G A SON Silent p.T509T 0.10 TCGA-IB-7651-01 21 34927550 34927550 G A SON Missense_Mutation p.V2005I 0.22 unknown(0) TCGA-IB-7651-01 21 34932532 34932532 G T SON Intron 0.08 TCGA-IB-7651-01 21 34954468 34954468 T C DONSON Intron 0.13 TCGA-IB-7651-01 21 34997011 34997011 G A CRYZL1 Missense_Mutation p.A41V 0.17 deleterious(0.04) probably_damaging(0.986) TCGA-IB-7651-01 21 35094941 35094941 T C ITSN1 Missense_Mutation p.V57A 0.26 deleterious(0) unknown(0) TCGA-IB-7651-01 21 35191585 35191585 C T ITSN1 Nonsense_Mutation p.R992* 0.08 TCGA-IB-7651-01 21 35202044 35202044 C T ITSN1 Silent p.L1116L 0.19 TCGA-IB-7651-01 21 35208915 35208915 G T ITSN1 Missense_Mutation p.D1214Y 0.06 deleterious(0) possibly_damaging(0.771) TCGA-IB-7651-01 21 35237530 35237530 G T ITSN1 Missense_Mutation p.Q1322H 0.14 tolerated(0.08) possibly_damaging(0.818) TCGA-IB-7651-01 21 35247768 35247768 G T ITSN1 Missense_Mutation p.E1428D 0.19 deleterious(0.04) possibly_damaging(0.672) TCGA-IB-7651-01 21 35254750 35254750 G A ITSN1 Missense_Mutation p.M1515I 0.20 tolerated(0.12) possibly_damaging(0.758) TCGA-IB-7651-01 21 35467703 35467703 C T SLC5A3 Missense_Mutation p.A69V 0.05 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 21 35469406 35469406 G T SLC5A3 Missense_Mutation p.A637S 0.09 tolerated(0.67) benign(0.013) TCGA-IB-7651-01 21 35742840 35742840 T G KCNE2 Silent p.T21T 0.11 TCGA-IB-7651-01 21 35821672 35821672 C T KCNE1 Nonsense_Mutation p.W87* 0.22 TCGA-IB-7651-01 21 35890400 35890400 C T RCAN1 Silent p.T247T 0.05 TCGA-IB-7651-01 21 36088748 36088748 G A CLIC6 Missense_Mutation p.A677T 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 21 37410520 37410520 C T SETD4 Silent p.E372E 0.10 TCGA-IB-7651-01 21 37420647 37420647 C T SETD4 Silent p.T85T 0.10 TCGA-IB-7651-01 21 37504774 37504774 T C CBR3 5'Flank 0.11 TCGA-IB-7651-01 21 37537005 37537005 G T DOPEY2 Splice_Site 0.11 TCGA-IB-7651-01 21 37617678 37617678 G A DOPEY2 Missense_Mutation p.D1134N 0.22 tolerated(0.25) benign(0.006) TCGA-IB-7651-01 21 37617780 37617780 G A DOPEY2 Missense_Mutation p.E1168K 0.20 tolerated(0.18) benign(0.199) TCGA-IB-7651-01 21 37617836 37617836 G A DOPEY2 Silent p.T1186T 0.20 TCGA-IB-7651-01 21 37620829 37620829 C T DOPEY2 Missense_Mutation p.T1654M 0.22 deleterious(0.04) benign(0.028) TCGA-IB-7651-01 21 37741529 37741529 G A MORC3 Silent p.Q621Q 0.21 TCGA-IB-7651-01 21 37763902 37763902 G A CHAF1B Missense_Mutation p.A105T 0.12 tolerated(0.43) benign(0.002) TCGA-IB-7651-01 21 37769717 37769717 A G CHAF1B Silent p.Q162Q 0.06 TCGA-IB-7651-01 21 37781761 37781761 C T CHAF1B Missense_Mutation p.T306I 0.22 tolerated(0.11) benign(0.035) TCGA-IB-7651-01 21 38132072 38132072 A G HLCS Missense_Mutation p.L584P 0.09 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 21 38139572 38139572 G A HLCS Missense_Mutation p.T489I 0.13 tolerated(0.3) benign(0.001) TCGA-IB-7651-01 21 38309528 38309528 G T HLCS Missense_Mutation p.P73T 0.10 tolerated(0.52) benign(0.033) TCGA-IB-7651-01 21 38519880 38519880 T C TTC3 Missense_Mutation p.Y665H 0.19 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 21 38537998 38537998 G A TTC3 Missense_Mutation p.R1161H 0.09 tolerated(0.12) benign(0.189) TCGA-IB-7651-01 21 38538444 38538444 C A TTC3 Missense_Mutation p.Q1310K 0.10 deleterious(0.04) benign(0.142) TCGA-IB-7651-01 21 38884724 38884724 C T DYRK1A Missense_Mutation p.P728S 0.10 deleterious_low_confidence(0) benign(0.068) TCGA-IB-7651-01 21 38997550 38997550 G A KCNJ6 Silent p.L395L 0.21 TCGA-IB-7651-01 21 39580635 39580635 A - DSCR10 RNA 0.24 TCGA-IB-7651-01 21 39671643 39671643 A T KCNJ15 Missense_Mutation p.T154S 0.23 tolerated(0.53) benign(0.192) TCGA-IB-7651-01 21 40184962 40184962 G A ETS2 Silent p.L36L 0.21 TCGA-IB-7651-01 21 40186851 40186851 G A ETS2 Missense_Mutation p.A151T 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 21 40191548 40191548 C T ETS2 Silent p.F311F 0.09 TCGA-IB-7651-01 21 40191600 40191600 A G ETS2 Missense_Mutation p.M329V 0.11 tolerated(0.58) benign(0.007) TCGA-IB-7651-01 21 40559106 40559106 C T BRWD1 Missense_Mutation p.R2270Q 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-IB-7651-01 21 40604155 40604155 T G BRWD1 Missense_Mutation p.N983T 0.21 deleterious(0.02) benign(0.156) TCGA-IB-7651-01 21 41384987 41384987 A G DSCAM Missense_Mutation p.Y2005H 0.05 deleterious_low_confidence(0) benign(0.003) TCGA-IB-7651-01 21 41457658 41457658 G A DSCAM Missense_Mutation p.R1335W 0.11 deleterious(0) probably_damaging(0.978) TCGA-IB-7651-01 21 41710129 41710129 A C DSCAM Missense_Mutation p.L561R 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 21 41711061 41711061 G A DSCAM Nonsense_Mutation p.R498* 0.24 TCGA-IB-7651-01 21 41741044 41741044 C T DSCAM Missense_Mutation p.A213T 0.17 deleterious(0.04) probably_damaging(0.997) TCGA-IB-7651-01 21 42080507 42080507 G A DSCAM Silent p.N78N 0.31 TCGA-IB-7651-01 21 42748845 42748845 C A MX2 Silent p.A4A 0.18 TCGA-IB-7651-01 21 42830566 42830566 G T MX1 Missense_Mutation p.D624Y 0.20 deleterious(0) probably_damaging(0.967) TCGA-IB-7651-01 21 43161377 43161377 C T RIPK4 Missense_Mutation p.R659Q 0.12 tolerated(0.43) possibly_damaging(0.692) TCGA-IB-7651-01 21 43161678 43161678 G A RIPK4 Nonsense_Mutation p.R559* 0.25 TCGA-IB-7651-01 21 43161895 43161895 G A RIPK4 Silent p.V486V 0.21 TCGA-IB-7651-01 21 43161903 43161903 G A RIPK4 Missense_Mutation p.R484W 0.08 deleterious(0.01) probably_damaging(0.964) TCGA-IB-7651-01 21 43171324 43171324 C T RIPK4 Missense_Mutation p.A186T 0.17 deleterious(0) probably_damaging(0.949) TCGA-IB-7651-01 21 43236126 43236126 C T PRDM15 Missense_Mutation p.C1142Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 21 43319445 43319445 A G C2CD2 Silent p.A529A 0.05 TCGA-IB-7651-01 21 43329596 43329596 C T C2CD2 Silent p.Q330Q 0.09 TCGA-IB-7651-01 21 43411126 43411126 G T ZBTB21 Missense_Mutation p.L1027I 0.21 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 21 43411317 43411317 G A ZBTB21 Missense_Mutation p.A963V 0.10 tolerated(0.06) benign(0.046) TCGA-IB-7651-01 21 43411416 43411416 A C ZBTB21 Missense_Mutation p.L930R 0.10 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 21 43504288 43504288 C T UMODL1 Silent p.D138D 0.04 TCGA-IB-7651-01 21 43508515 43508515 C T UMODL1 Missense_Mutation p.P239S 0.22 tolerated(0.09) probably_damaging(0.925) TCGA-IB-7651-01 21 43547924 43547924 G A UMODL1 Missense_Mutation p.G1353R 0.06 tolerated(0.15) possibly_damaging(0.479) TCGA-IB-7651-01 21 43706095 43706095 G T ABCG1 Missense_Mutation p.A322S 0.21 tolerated(0.06) benign(0.244) TCGA-IB-7651-01 21 43708092 43708092 A G ABCG1 Missense_Mutation p.D356G 0.10 tolerated(0.31) benign(0) TCGA-IB-7651-01 21 43716283 43716283 C T ABCG1 Silent p.F606F 0.22 TCGA-IB-7651-01 21 43783485 43783485 C T TFF1 Silent p.Q39Q 0.20 TCGA-IB-7651-01 21 43796726 43796726 C A TMPRSS3 Missense_Mutation p.R373M 0.22 deleterious(0.04) probably_damaging(0.93) TCGA-IB-7651-01 21 43815520 43815520 C T TMPRSS3 Missense_Mutation p.E3K 0.08 tolerated_low_confidence(0.1) possibly_damaging(0.891) TCGA-IB-7651-01 21 43846890 43846890 A G UBASH3A Silent p.P377P 0.21 TCGA-IB-7651-01 21 44119111 44119111 G T PDE9A Missense_Mutation p.K84N 0.05 tolerated(0.34) benign(0.009) TCGA-IB-7651-01 21 44272427 44272427 G A WDR4 Missense_Mutation p.P328L 0.25 deleterious(0.01) benign(0.005) TCGA-IB-7651-01 21 44324264 44324264 A G NDUFV3 Missense_Mutation p.E381G 0.19 deleterious(0.01) benign(0.15) TCGA-IB-7651-01 21 44486459 44486459 G A CBS Silent p.G115G 0.11 TCGA-IB-7651-01 21 44589368 44589368 C T CRYAA Silent p.F53F 0.10 TCGA-IB-7651-01 21 44839359 44839359 C A SIK1 Splice_Site p.X374_splice 0.18 TCGA-IB-7651-01 21 45064180 45064180 C T HSF2BP Missense_Mutation p.R94K 0.08 tolerated(0.73) benign(0.009) TCGA-IB-7651-01 21 45064210 45064210 C T HSF2BP Missense_Mutation p.R84H 0.07 deleterious(0) probably_damaging(0.984) TCGA-IB-7651-01 21 45152453 45152453 G A PDXK Intron 0.09 TCGA-IB-7651-01 21 45173522 45173522 C T PDXK Silent p.D227D 0.12 TCGA-IB-7651-01 21 45175635 45175635 G A PDXK Silent p.Q272Q 0.11 TCGA-IB-7651-01 21 45379592 45379592 G T AGPAT3 Missense_Mutation p.Q10H 0.22 tolerated(0.22) benign(0.062) TCGA-IB-7651-01 21 45402199 45402199 C T AGPAT3 Missense_Mutation p.R353C 0.11 deleterious(0) possibly_damaging(0.856) TCGA-IB-7651-01 21 45483547 45483547 C T TRAPPC10 Missense_Mutation p.R307C 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 21 45507691 45507691 C T TRAPPC10 Missense_Mutation p.S884F 0.21 tolerated(0.22) benign(0.025) TCGA-IB-7651-01 21 45522699 45522699 C A TRAPPC10 Missense_Mutation p.S1129R 0.19 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 21 45533719 45533719 G A PWP2 Missense_Mutation p.V73I 0.17 tolerated(0.3) benign(0.021) TCGA-IB-7651-01 21 45657062 45657062 C T ICOSLG Missense_Mutation p.D32N 0.10 tolerated(0.16) benign(0.249) TCGA-IB-7651-01 21 45666402 45666402 C T DNMT3L Missense_Mutation p.A348T 0.18 tolerated(0.1) benign(0.005) TCGA-IB-7651-01 21 45678505 45678505 G T DNMT3L Missense_Mutation p.N139K 0.07 tolerated(0.1) benign(0.026) TCGA-IB-7651-01 21 45713016 45713016 G A AIRE Silent p.S412S 0.17 TCGA-IB-7651-01 21 45713671 45713671 G T AIRE Splice_Site p.X427_splice 0.11 TCGA-IB-7651-01 21 45744399 45744399 C T PFKL Missense_Mutation p.A559V 0.10 deleterious(0) possibly_damaging(0.688) TCGA-IB-7651-01 21 45773570 45773570 G A TRPM2 5'UTR 0.12 TCGA-IB-7651-01 21 45789167 45789167 A G TRPM2 Missense_Mutation p.T238A 0.12 tolerated(0.71) benign(0.169) TCGA-IB-7651-01 21 45837893 45837893 G A TRPM2 Missense_Mutation p.R1077H 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 21 45877433 45877433 G T LRRC3 3'UTR 0.23 TCGA-IB-7651-01 21 45949758 45949758 G A TSPEAR Missense_Mutation p.A238V 0.20 tolerated(0.06) benign(0.007) TCGA-IB-7651-01 21 45970443 45970443 C T KRTAP10-2 3'UTR 0.18 TCGA-IB-7651-01 21 45977936 45977936 G T KRTAP10-3 Nonsense_Mutation p.C221* 0.11 TCGA-IB-7651-01 21 45993726 45993726 G A KRTAP10-4 Missense_Mutation p.D31N 0.18 tolerated(0.17) benign(0.23) TCGA-IB-7651-01 21 46032698 46032698 C A KRTAP10-8 Silent p.S227S 0.10 TCGA-IB-7651-01 21 46117425 46117425 C A KRTAP10-12 Silent p.A103A 0.12 TCGA-IB-7651-01 21 46117739 46117739 G A KRTAP10-12 Missense_Mutation p.R208H 0.10 deleterious(0.02) unknown(0) TCGA-IB-7651-01 21 46320235 46320235 G A ITGB2 Silent p.F299F 0.10 TCGA-IB-7651-01 21 46703411 46703411 G A POFUT2 Silent p.Y138Y 0.20 TCGA-IB-7651-01 21 46893834 46893834 G A COL18A1 Missense_Mutation p.R406H 0.24 unknown(0) TCGA-IB-7651-01 21 46908341 46908341 G A COL18A1 Missense_Mutation p.G816S 0.09 probably_damaging(1) TCGA-IB-7651-01 21 46911190 46911190 G A COL18A1 Missense_Mutation p.G887R 0.17 probably_damaging(1) TCGA-IB-7651-01 21 46950795 46950795 G A SLC19A1 Missense_Mutation p.A347V 0.24 deleterious(0) probably_damaging(0.939) TCGA-IB-7651-01 21 47329321 47329321 C T PCBP3 Missense_Mutation p.T131M 0.24 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 21 47330914 47330914 C T PCBP3 Silent p.C190C 0.19 TCGA-IB-7651-01 21 47337513 47337513 C T PCBP3 Silent p.I229I 0.20 TCGA-IB-7651-01 21 47410314 47410314 T C COL6A1 Missense_Mutation p.I327T 0.21 tolerated(0.57) unknown(0) TCGA-IB-7651-01 21 47423624 47423624 C T COL6A1 Silent p.R928R 0.21 TCGA-IB-7651-01 21 47532275 47532275 C T COL6A2 Silent p.T166T 0.21 TCGA-IB-7651-01 21 47538546 47538546 G T COL6A2 Nonsense_Mutation p.G379* 0.20 TCGA-IB-7651-01 21 47546054 47546054 C T COL6A2 Silent p.I775I 0.10 TCGA-IB-7651-01 21 47548984 47548984 C A COL6A2 Intron 0.23 TCGA-IB-7651-01 21 47552176 47552176 G A COL6A2 Missense_Mutation p.A924T 0.20 tolerated(0.12) probably_damaging(0.999) TCGA-IB-7651-01 21 47552344 47552344 G A COL6A2 Missense_Mutation p.V980M 0.19 deleterious(0.04) probably_damaging(0.991) TCGA-IB-7651-01 21 47556926 47556926 T A FTCD Missense_Mutation p.D534V 0.22 tolerated(0.1) benign(0.09) TCGA-IB-7651-01 21 47571627 47571627 C T FTCD Missense_Mutation p.D161N 0.18 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 21 47639448 47639448 G T LSS Missense_Mutation p.L197M 0.09 deleterious(0.04) probably_damaging(0.952) TCGA-IB-7651-01 21 47664864 47664864 G A MCM3AP Missense_Mutation p.S1632F 0.10 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 21 47671525 47671525 G T MCM3AP Missense_Mutation p.A1403D 0.17 tolerated(0.53) possibly_damaging(0.462) TCGA-IB-7651-01 21 47685237 47685237 C T MCM3AP Missense_Mutation p.E1078K 0.21 tolerated(0.69) benign(0.007) TCGA-IB-7651-01 21 47686901 47686901 G A MCM3AP Silent p.S928S 0.20 TCGA-IB-7651-01 21 47690332 47690332 G A MCM3AP Missense_Mutation p.H871Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 21 47692708 47692708 C T MCM3AP Silent p.T744T 0.17 TCGA-IB-7651-01 21 47697518 47697518 G A MCM3AP Missense_Mutation p.T594I 0.09 tolerated(0.22) benign(0.002) TCGA-IB-7651-01 21 47754626 47754626 C T PCNT Missense_Mutation p.R195C 0.10 benign(0) TCGA-IB-7651-01 21 47766794 47766794 C T PCNT Silent p.S286S 0.22 TCGA-IB-7651-01 21 47769052 47769052 C T PCNT Nonsense_Mutation p.Q387* 0.08 TCGA-IB-7651-01 21 47769729 47769729 C A PCNT Missense_Mutation p.L447M 0.07 benign(0.34) TCGA-IB-7651-01 21 47817955 47817955 C T PCNT Missense_Mutation p.R1492C 0.20 possibly_damaging(0.876) TCGA-IB-7651-01 21 47831953 47831953 C A PCNT Missense_Mutation p.A1989D 0.20 benign(0.091) TCGA-IB-7651-01 21 47851714 47851714 G A PCNT Missense_Mutation p.C2779Y 0.10 possibly_damaging(0.831) TCGA-IB-7651-01 21 47851775 47851775 C T PCNT Silent p.S2799S 0.21 TCGA-IB-7651-01 21 47860063 47860063 C T PCNT Missense_Mutation p.P3114L 0.17 possibly_damaging(0.908) TCGA-IB-7651-01 21 47931370 47931370 C T DIP2A Silent p.S315S 0.12 TCGA-IB-7651-01 21 47931507 47931507 C T DIP2A Missense_Mutation p.A361V 0.09 tolerated(0.44) possibly_damaging(0.505) TCGA-IB-7651-01 21 47966834 47966834 C A DIP2A Missense_Mutation p.L801M 0.19 tolerated(0.07) probably_damaging(0.996) TCGA-IB-7651-01 22 16287300 16287300 C T POTEH Missense_Mutation p.V196I 0.10 tolerated(0.08) probably_damaging(0.951) TCGA-IB-7651-01 22 16287519 16287519 G T POTEH Missense_Mutation p.H123N 0.17 deleterious_low_confidence(0.02) benign(0.199) TCGA-IB-7651-01 22 17073413 17073413 C A CCT8L2 Nonsense_Mutation p.E10* 0.18 TCGA-IB-7651-01 22 17280674 17280674 C T XKR3 Nonsense_Mutation p.W192* 0.14 TCGA-IB-7651-01 22 17288713 17288713 A G XKR3 Missense_Mutation p.I84T 0.21 tolerated(1) benign(0.001) TCGA-IB-7651-01 22 17309850 17309850 G A HSFY1P1 RNA 0.23 TCGA-IB-7651-01 22 17447087 17447087 G A GAB4 Silent p.G397G 0.19 TCGA-IB-7651-01 22 17472966 17472966 C T GAB4 Missense_Mutation p.R92H 0.18 deleterious(0) benign(0.317) TCGA-IB-7651-01 22 17488858 17488858 C T GAB4 Silent p.S49S 0.19 TCGA-IB-7651-01 22 17586821 17586821 T C IL17RA Missense_Mutation p.V341A 0.10 deleterious(0.01) benign(0.218) TCGA-IB-7651-01 22 17590366 17590366 C T IL17RA Missense_Mutation p.L753F 0.24 tolerated(0.47) benign(0.012) TCGA-IB-7651-01 22 17601069 17601069 C T CECR6 Missense_Mutation p.A317T 0.21 deleterious(0.05) unknown(0) TCGA-IB-7651-01 22 17619225 17619225 A G CECR5 Missense_Mutation p.Y320H 0.16 deleterious(0) possibly_damaging(0.827) TCGA-IB-7651-01 22 17663567 17663567 C T CECR1 Missense_Mutation p.S389N 0.24 tolerated(0.55) benign(0.006) TCGA-IB-7651-01 22 18003201 18003201 C T CECR2 Missense_Mutation p.R297C 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 22 18022006 18022006 C T CECR2 Missense_Mutation p.A704V 0.18 deleterious(0) benign(0.075) TCGA-IB-7651-01 22 18022140 18022140 C T CECR2 Missense_Mutation p.H749Y 0.19 deleterious(0.01) possibly_damaging(0.635) TCGA-IB-7651-01 22 18022171 18022171 C A CECR2 Missense_Mutation p.A759D 0.13 deleterious(0.03) possibly_damaging(0.678) TCGA-IB-7651-01 22 18028909 18028909 C T CECR2 Missense_Mutation p.S1290L 0.19 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-IB-7651-01 22 18031740 18031740 G A CECR2 Silent p.S1413S 0.15 TCGA-IB-7651-01 22 18171769 18171769 T G BCL2L13 Missense_Mutation p.F83V 0.19 deleterious(0) benign(0.232) TCGA-IB-7651-01 22 18301163 18301163 G T MICAL3 Missense_Mutation p.L1422M 0.24 possibly_damaging(0.572) TCGA-IB-7651-01 22 18347481 18347481 C A MICAL3 Intron 0.08 TCGA-IB-7651-01 22 18385498 18385498 T C MICAL3 Missense_Mutation p.Q163R 0.13 probably_damaging(0.996) TCGA-IB-7651-01 22 18387407 18387407 C T MICAL3 Missense_Mutation p.D155N 0.18 probably_damaging(0.995) TCGA-IB-7651-01 22 18570908 18570908 G A PEX26 3'UTR 0.19 TCGA-IB-7651-01 22 18604408 18604408 A C TUBA8 Missense_Mutation p.T56P 0.18 deleterious_low_confidence(0) benign(0.065) TCGA-IB-7651-01 22 18609586 18609586 G A TUBA8 Missense_Mutation p.A281T 0.19 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-IB-7651-01 22 18898402 18898402 C T DGCR6 Missense_Mutation p.A125V 0.18 tolerated(0.1) benign(0.029) TCGA-IB-7651-01 22 18898435 18898435 C T DGCR6 Missense_Mutation p.A136V 0.17 tolerated(0.26) benign(0.131) TCGA-IB-7651-01 22 18910658 18910658 C A PRODH Missense_Mutation p.K234N 0.18 deleterious(0) probably_damaging(0.97) TCGA-IB-7651-01 22 18975272 18975272 C T DGCR5 Intron 0.18 TCGA-IB-7651-01 22 19028666 19028666 G A DGCR2 Missense_Mutation p.T434M 0.17 tolerated(0.08) probably_damaging(0.999) TCGA-IB-7651-01 22 19076975 19076975 C T DGCR2 Silent p.A36A 0.22 TCGA-IB-7651-01 22 19119450 19119450 G A TSSK2 Missense_Mutation p.A180T 0.09 deleterious(0.02) probably_damaging(0.951) TCGA-IB-7651-01 22 19119459 19119459 G A TSSK2 Missense_Mutation p.A183T 0.18 deleterious(0) probably_damaging(0.955) TCGA-IB-7651-01 22 19163678 19163678 C T SLC25A1 Missense_Mutation p.V301M 0.15 tolerated(0.88) benign(0.016) TCGA-IB-7651-01 22 19226854 19226854 C T CLTCL1 Missense_Mutation p.A247T 0.17 tolerated(0.2) benign(0.083) TCGA-IB-7651-01 22 19459280 19459280 G A UFD1L Missense_Mutation p.S74L 0.22 tolerated(0.25) benign(0.004) TCGA-IB-7651-01 22 19706189 19706189 T C SEPT5 Intron 0.16 TCGA-IB-7651-01 22 19707735 19707735 C T SEPT5 Silent p.F112F 0.15 TCGA-IB-7651-01 22 19708076 19708076 C T SEPT5 Missense_Mutation p.R168W 0.22 deleterious(0.01) probably_damaging(0.984) TCGA-IB-7651-01 22 19709181 19709181 G A SEPT5 Missense_Mutation p.V246I 0.05 deleterious(0.04) probably_damaging(0.993) TCGA-IB-7651-01 22 19709380 19709380 C T SEPT5 Missense_Mutation p.R284C 0.22 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 22 19770458 19770458 G A GNB1L 3'Flank 0.17 TCGA-IB-7651-01 22 19838878 19838878 G T C22orf29 Missense_Mutation p.L303M 0.19 deleterious(0.01) possibly_damaging(0.625) TCGA-IB-7651-01 22 19839449 19839449 C T C22orf29 Nonsense_Mutation p.W112* 0.17 TCGA-IB-7651-01 22 19868151 19868151 G A TXNRD2 Silent p.Y392Y 0.21 TCGA-IB-7651-01 22 19870891 19870891 G A TXNRD2 Missense_Mutation p.A348V 0.21 deleterious(0.05) benign(0.005) TCGA-IB-7651-01 22 19882713 19882713 G T TXNRD2 Intron 0.15 TCGA-IB-7651-01 22 19963242 19963242 G T ARVCF Missense_Mutation p.L643I 0.18 tolerated(0.33) benign(0.051) TCGA-IB-7651-01 22 19965028 19965028 C A ARVCF Nonsense_Mutation p.E594* 0.13 TCGA-IB-7651-01 22 19969241 19969241 G A ARVCF Missense_Mutation p.T130M 0.20 deleterious(0) possibly_damaging(0.863) TCGA-IB-7651-01 22 20073377 20073377 C T DGCR8 5'UTR 0.04 TCGA-IB-7651-01 22 20073696 20073696 C T DGCR8 Silent p.Y70Y 0.20 TCGA-IB-7651-01 22 20074812 20074812 C T DGCR8 Missense_Mutation p.P283L 0.17 tolerated(0.05) probably_damaging(0.98) TCGA-IB-7651-01 22 20094192 20094192 C T DGCR8 Missense_Mutation p.A656V 0.13 deleterious(0.03) benign(0.105) TCGA-IB-7651-01 22 20112936 20112936 C T RANBP1 Missense_Mutation p.A139V 0.22 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 22 20130691 20130691 C T ZDHHC8 Missense_Mutation p.A513V 0.18 tolerated(0.29) benign(0.003) TCGA-IB-7651-01 22 20230563 20230563 G A RTN4R Silent p.C31C 0.21 TCGA-IB-7651-01 22 20458364 20458364 C A RIMBP3 Missense_Mutation p.G980C 0.08 deleterious(0) probably_damaging(0.978) TCGA-IB-7651-01 22 20721016 20721016 C T USP41 Silent p.K244K 0.16 TCGA-IB-7651-01 22 20729862 20729862 C T USP41 Silent p.L106L 0.19 TCGA-IB-7651-01 22 20800760 20800760 G A KLHL22 Silent p.N503N 0.15 TCGA-IB-7651-01 22 20819860 20819860 G A KLHL22 Missense_Mutation p.P133S 0.18 tolerated(0.74) benign(0.018) TCGA-IB-7651-01 22 20843290 20843290 G A KLHL22 Missense_Mutation p.A70V 0.12 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 22 20921060 20921060 G T MED15 Missense_Mutation p.A333S 0.17 tolerated_low_confidence(0.1) unknown(0) TCGA-IB-7651-01 22 20937634 20937634 A C MED15 Missense_Mutation p.S564R 0.04 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 22 20970592 20970592 C A SMPD4P1 Intron 0.23 TCGA-IB-7651-01 22 21087302 21087302 G T PI4KA Missense_Mutation p.F1415L 0.15 tolerated(0.74) benign(0.001) TCGA-IB-7651-01 22 21105625 21105625 C T PI4KA Missense_Mutation p.A1037T 0.14 tolerated(1) benign(0) TCGA-IB-7651-01 22 21133946 21133947 - T SERPIND1 Frame_Shift_Ins p.H118Sfs*10 0.11 TCGA-IB-7651-01 22 21134137 21134137 G A SERPIND1 Silent p.S179S 0.20 TCGA-IB-7651-01 22 21141285 21141285 C T SERPIND1 Silent p.F477F 0.17 TCGA-IB-7651-01 22 21150489 21150489 C T PI4KA Missense_Mutation p.G741E 0.12 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 22 21224631 21224631 G A SNAP29 Missense_Mutation p.A82T 0.19 tolerated(0.06) benign(0.053) TCGA-IB-7651-01 22 21224637 21224637 C T SNAP29 Nonsense_Mutation p.Q84* 0.14 TCGA-IB-7651-01 22 21330996 21330996 C T AIFM3 Silent p.L363L 0.17 TCGA-IB-7651-01 22 21333851 21333851 G A AIFM3 Intron 0.19 TCGA-IB-7651-01 22 21335305 21335305 G A AIFM3 Silent p.T601T 0.22 TCGA-IB-7651-01 22 21345925 21345925 G A LZTR1 Missense_Mutation p.R267H 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 22 21354375 21354375 G A THAP7 Missense_Mutation p.R242W 0.21 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 22 21363184 21363184 C T AC002472.1 5'Flank 0.16 TCGA-IB-7651-01 22 21380774 21380774 A G P2RX6 Silent p.R398R 0.20 TCGA-IB-7651-01 22 21385522 21385522 G T SLC7A4 Missense_Mutation p.L194I 0.20 tolerated(0.19) benign(0.364) TCGA-IB-7651-01 22 21800714 21800714 C T HIC2 Silent p.C510C 0.15 TCGA-IB-7651-01 22 21800868 21800868 G A HIC2 Missense_Mutation p.A562T 0.10 deleterious(0.01) probably_damaging(0.948) TCGA-IB-7651-01 22 21988516 21988516 C T CCDC116 Missense_Mutation p.A93V 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 22 21998296 21998296 C T SDF2L1 Silent p.G166G 0.14 TCGA-IB-7651-01 22 22007631 22007631 G A MIR130B RNA 0.16 TCGA-IB-7651-01 22 22039067 22039067 G A PPIL2 Silent p.P193P 0.14 TCGA-IB-7651-01 22 22293842 22293842 G A PPM1F Intron 0.24 TCGA-IB-7651-01 22 22599398 22599398 G A VPREB1 Missense_Mutation p.M29I 0.19 tolerated(0.07) benign(0.041) TCGA-IB-7651-01 22 22707534 22707534 G A IGLV5-48 Missense_Mutation p.C41Y 0.23 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 22 22868833 22868833 T G ZNF280A Missense_Mutation p.E374D 0.16 deleterious(0.02) possibly_damaging(0.834) TCGA-IB-7651-01 22 22989491 22989491 G A GGTLC2 Missense_Mutation p.V115M 0.08 tolerated(0.06) benign(0.403) TCGA-IB-7651-01 22 23011242 23011242 C T IGLV3-27 Missense_Mutation p.A102V 0.08 deleterious(0.01) probably_damaging(0.983) TCGA-IB-7651-01 22 23040647 23040647 C A IGLV2-23 Missense_Mutation p.S32Y 0.04 deleterious_low_confidence(0) possibly_damaging(0.783) TCGA-IB-7651-01 22 23047022 23047022 C T IGLV3-22 Silent p.S20S 0.17 TCGA-IB-7651-01 22 23047024 23047024 A G IGLV3-22 Missense_Mutation p.Y21C 0.17 tolerated(0.06) benign(0.047) TCGA-IB-7651-01 22 23264792 23264792 A G IGLC7 Missense_Mutation p.T10A 0.11 deleterious_low_confidence(0) benign(0.1) TCGA-IB-7651-01 22 23465529 23465529 G A GNAZ Missense_Mutation p.A327T 0.20 deleterious(0) probably_damaging(0.981) TCGA-IB-7651-01 22 23495220 23495220 G A RAB36 Silent p.R142R 0.22 TCGA-IB-7651-01 22 23980923 23980923 C T GUSBP11 RNA 0.19 TCGA-IB-7651-01 22 24034358 24034358 C T RGL4 Silent p.G47G 0.18 TCGA-IB-7651-01 22 24086756 24086756 G A ZNF70 Missense_Mutation p.T191I 0.15 deleterious(0.01) possibly_damaging(0.895) TCGA-IB-7651-01 22 24123083 24123083 C T MMP11 Silent p.G218G 0.21 TCGA-IB-7651-01 22 24176329 24176329 C T SMARCB1 Missense_Mutation p.R374W 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 22 24177042 24177042 G A DERL3 Missense_Mutation p.T231M 0.17 tolerated(0.11) benign(0.001) TCGA-IB-7651-01 22 24179333 24179333 C T DERL3 Missense_Mutation p.V178M 0.06 deleterious(0.02) probably_damaging(0.972) TCGA-IB-7651-01 22 24455729 24455729 T C CABIN1 Silent p.F434F 0.24 TCGA-IB-7651-01 22 24456585 24456585 G A CABIN1 Missense_Mutation p.C533Y 0.20 tolerated(0.12) probably_damaging(0.996) TCGA-IB-7651-01 22 24480696 24480696 C T CABIN1 Silent p.S1025S 0.20 TCGA-IB-7651-01 22 24509677 24509677 C T CABIN1 Missense_Mutation p.A1421V 0.16 tolerated(0.32) benign(0.016) TCGA-IB-7651-01 22 24561582 24561582 C T CABIN1 Silent p.S1665S 0.22 TCGA-IB-7651-01 22 24615921 24615921 C T GGT5 3'UTR 0.25 TCGA-IB-7651-01 22 24622114 24622114 C T GGT5 Missense_Mutation p.G387S 0.15 deleterious(0) possibly_damaging(0.856) TCGA-IB-7651-01 22 24622171 24622171 G A GGT5 Missense_Mutation p.R368W 0.16 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 22 24709374 24709374 G A SPECC1L Missense_Mutation p.A83T 0.06 tolerated(0.09) benign(0.001) TCGA-IB-7651-01 22 24829461 24829461 C T ADORA2A Missense_Mutation p.A30V 0.21 tolerated(0.06) possibly_damaging(0.644) TCGA-IB-7651-01 22 24898122 24898122 C A UPB1 Missense_Mutation p.A102D 0.04 tolerated(0.55) benign(0.001) TCGA-IB-7651-01 22 25007192 25007192 G A GGT1 Silent p.K48K 0.18 TCGA-IB-7651-01 22 25024251 25024251 T C GGT1 Missense_Mutation p.Y487H 0.17 tolerated(0.32) benign(0.001) TCGA-IB-7651-01 22 25131759 25131759 C A PIWIL3 Missense_Mutation p.S517I 0.17 deleterious(0.01) benign(0.006) TCGA-IB-7651-01 22 25251355 25251355 C T SGSM1 Silent p.S209S 0.16 TCGA-IB-7651-01 22 25251633 25251633 G A SGSM1 Missense_Mutation p.V263I 0.17 deleterious(0.01) possibly_damaging(0.701) TCGA-IB-7651-01 22 25255780 25255780 C T SGSM1 Missense_Mutation p.S300F 0.16 tolerated(0.07) benign(0.313) TCGA-IB-7651-01 22 25601329 25601329 C T CRYBB3 Missense_Mutation p.T157M 0.13 tolerated(0.05) probably_damaging(0.998) TCGA-IB-7651-01 22 25625529 25625529 C T CRYBB2 Missense_Mutation p.R145W 0.16 deleterious(0) probably_damaging(0.923) TCGA-IB-7651-01 22 25627693 25627693 G A CRYBB2 Missense_Mutation p.R191H 0.15 tolerated(0.05) benign(0.278) TCGA-IB-7651-01 22 25747675 25747675 T C LRP5L 3'UTR 0.12 TCGA-IB-7651-01 22 25747794 25747794 G T LRP5L Missense_Mutation p.A244D 0.08 deleterious(0) possibly_damaging(0.724) TCGA-IB-7651-01 22 25750768 25750768 G A LRP5L Silent p.V150V 0.20 TCGA-IB-7651-01 22 26107046 26107046 C A ADRBK2 Silent p.P469P 0.07 TCGA-IB-7651-01 22 26165028 26165028 C A MYO18B Missense_Mutation p.T382N 0.17 tolerated_low_confidence(0.47) benign(0.109) TCGA-IB-7651-01 22 26219522 26219522 G A MYO18B Missense_Mutation p.A858T 0.18 deleterious(0.02) possibly_damaging(0.69) TCGA-IB-7651-01 22 26224921 26224921 C T MYO18B Nonsense_Mutation p.Q989* 0.18 TCGA-IB-7651-01 22 26306978 26306978 G A MYO18B Silent p.K1775K 0.20 TCGA-IB-7651-01 22 26346384 26346384 G A MYO18B Missense_Mutation p.A1934T 0.12 tolerated(0.15) benign(0.053) TCGA-IB-7651-01 22 26399271 26399271 G A MYO18B Missense_Mutation p.E2110K 0.20 tolerated(0.14) probably_damaging(0.932) TCGA-IB-7651-01 22 26423431 26423431 G T MYO18B Missense_Mutation p.E2497D 0.20 tolerated(0.05) benign(0.392) TCGA-IB-7651-01 22 26761510 26761510 C T SEZ6L Silent p.N924N 0.15 TCGA-IB-7651-01 22 26830336 26830336 G A ASPHD2 Missense_Mutation p.R252H 0.19 tolerated(0.09) probably_damaging(0.999) TCGA-IB-7651-01 22 26838423 26838423 A G ASPHD2 Splice_Site p.X296_splice 0.10 TCGA-IB-7651-01 22 26854526 26854526 A C HPS4 Silent p.A577A 0.13 TCGA-IB-7651-01 22 26860621 26860621 G A HPS4 Silent p.N325N 0.18 TCGA-IB-7651-01 22 26861460 26861460 G T HPS4 Missense_Mutation p.A255D 0.18 deleterious(0.01) possibly_damaging(0.845) TCGA-IB-7651-01 22 26888122 26888122 C T TFIP11 Missense_Mutation p.V791I 0.19 tolerated(1) benign(0.001) TCGA-IB-7651-01 22 26902834 26902834 C T TFIP11 Silent p.A90A 0.09 TCGA-IB-7651-01 22 26937351 26937351 C T TPST2 Silent p.T82T 0.21 TCGA-IB-7651-01 22 27021478 27021478 G A CRYBA4 Silent p.G64G 0.17 TCGA-IB-7651-01 22 27026502 27026502 G A CRYBA4 3'UTR 0.19 TCGA-IB-7651-01 22 28193583 28193583 G A MN1 Silent p.G983G 0.18 TCGA-IB-7651-01 22 28193973 28193973 C T MN1 Silent p.P853P 0.19 TCGA-IB-7651-01 22 28195094 28195094 C T MN1 Missense_Mutation p.G480S 0.17 benign(0.182) TCGA-IB-7651-01 22 28196327 28196327 C T MN1 Missense_Mutation p.G69S 0.19 probably_damaging(0.999) TCGA-IB-7651-01 22 28269748 28269748 C T PITPNB Missense_Mutation p.G171D 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 22 29446300 29446300 G A ZNRF3 Missense_Mutation p.A711T 0.20 tolerated_low_confidence(0.25) benign(0.005) TCGA-IB-7651-01 22 29446426 29446426 G A ZNRF3 Missense_Mutation p.G753R 0.22 deleterious_low_confidence(0.04) benign(0.043) TCGA-IB-7651-01 22 29449713 29449713 A G ZNRF3 3'UTR 0.22 TCGA-IB-7651-01 22 29517357 29517357 T G KREMEN1 Missense_Mutation p.L122R 0.19 deleterious(0.03) probably_damaging(1) TCGA-IB-7651-01 22 29533635 29533635 G A KREMEN1 Missense_Mutation p.A313T 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-IB-7651-01 22 29674083 29674083 T G EWSR1 Silent p.A103A 0.22 TCGA-IB-7651-01 22 29678381 29678381 C T EWSR1 Missense_Mutation p.P145L 0.12 tolerated_low_confidence(0.12) benign(0.31) TCGA-IB-7651-01 22 29707995 29707995 C T GAS2L1 3'UTR 0.21 TCGA-IB-7651-01 22 29708458 29708458 C T GAS2L1 3'Flank 0.13 TCGA-IB-7651-01 22 29727889 29727889 C T AP1B1 Missense_Mutation p.A776T 0.21 tolerated(0.07) benign(0.008) TCGA-IB-7651-01 22 29835265 29835265 T G RFPL1 Intron 0.20 TCGA-IB-7651-01 22 29838193 29838193 C T RFPL1 3'UTR 0.14 TCGA-IB-7651-01 22 29876229 29876229 G A NEFH 5'UTR 0.39 TCGA-IB-7651-01 22 29881809 29881809 C T NEFH Missense_Mutation p.A394V 0.17 deleterious(0) unknown(0) TCGA-IB-7651-01 22 29886650 29886650 T A NEFH Silent p.P1007P 0.23 TCGA-IB-7651-01 22 29913321 29913321 C A THOC5 Missense_Mutation p.Q508H 0.21 tolerated(0.14) benign(0.216) TCGA-IB-7651-01 22 30186501 30186501 C A ASCC2 Nonsense_Mutation p.E687* 0.16 TCGA-IB-7651-01 22 30212055 30212055 G T ASCC2 Silent p.I183I 0.15 TCGA-IB-7651-01 22 30640766 30640766 G A LIF Missense_Mutation p.A59V 0.20 deleterious(0) probably_damaging(0.915) TCGA-IB-7651-01 22 30689795 30689795 C T TBC1D10A Splice_Site p.X306_splice 0.18 TCGA-IB-7651-01 22 30735152 30735152 G A SF3A1 Silent p.I488I 0.17 TCGA-IB-7651-01 22 30782666 30782666 T C RNF215 Missense_Mutation p.Q123R 0.18 tolerated_low_confidence(0.1) benign(0.084) TCGA-IB-7651-01 22 30805262 30805262 C T SEC14L2 Silent p.A170A 0.23 TCGA-IB-7651-01 22 30823180 30823180 G A MTFP1 Missense_Mutation p.R73H 0.10 tolerated(0.22) benign(0.013) TCGA-IB-7651-01 22 30856091 30856091 C T SEC14L3 Missense_Mutation p.A374T 0.16 tolerated(0.31) benign(0) TCGA-IB-7651-01 22 30857366 30857366 G A SEC14L3 Missense_Mutation p.P338S 0.18 tolerated(0.05) benign(0.001) TCGA-IB-7651-01 22 30890926 30890926 G A SEC14L4 Missense_Mutation p.A149V 0.19 tolerated(0.72) benign(0.002) TCGA-IB-7651-01 22 30951198 30951198 G A GAL3ST1 Silent p.N338N 0.21 TCGA-IB-7651-01 22 30951676 30951676 G A GAL3ST1 Missense_Mutation p.P179L 0.18 tolerated(0.27) benign(0.005) TCGA-IB-7651-01 22 30951867 30951867 G A GAL3ST1 Silent p.F115F 0.08 TCGA-IB-7651-01 22 30980611 30980611 G A PES1 Silent p.H154H 0.17 TCGA-IB-7651-01 22 31008947 31008947 C A TCN2 Missense_Mutation p.N115K 0.18 tolerated(0.05) probably_damaging(0.982) TCGA-IB-7651-01 22 31011441 31011441 G T TCN2 Missense_Mutation p.S245I 0.13 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 22 31011607 31011607 T A TCN2 Missense_Mutation p.M258K 0.16 tolerated(0.32) benign(0.001) TCGA-IB-7651-01 22 31011762 31011762 C A TCN2 Missense_Mutation p.L310M 0.08 tolerated(0.11) benign(0.399) TCGA-IB-7651-01 22 31032960 31032960 G A SLC35E4 Missense_Mutation p.A175T 0.15 tolerated(0.06) probably_damaging(0.963) TCGA-IB-7651-01 22 31091406 31091406 C T OSBP2 Silent p.G170G 0.17 TCGA-IB-7651-01 22 31289171 31289171 G A OSBP2 Nonsense_Mutation p.W644* 0.19 TCGA-IB-7651-01 22 31322724 31322724 T C MORC2 3'UTR 0.20 TCGA-IB-7651-01 22 31483985 31483985 G A SMTN Missense_Mutation p.R29H 0.21 tolerated(0.06) possibly_damaging(0.685) TCGA-IB-7651-01 22 31484516 31484516 C A SMTN Missense_Mutation p.A73D 0.09 deleterious(0.02) probably_damaging(0.995) TCGA-IB-7651-01 22 31484712 31484712 C T SMTN Missense_Mutation p.R108C 0.22 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 22 31489809 31489809 G A SMTN Intron 0.29 TCGA-IB-7651-01 22 31494783 31494783 C T SMTN Missense_Mutation p.R764C 0.12 deleterious(0.01) possibly_damaging(0.769) TCGA-IB-7651-01 22 31529975 31529975 G A INPP5J Missense_Mutation p.S496N 0.09 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-IB-7651-01 22 31531903 31531903 C T PLA2G3 Missense_Mutation p.A446T 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 22 31535981 31535981 C T PLA2G3 Silent p.A120A 0.19 TCGA-IB-7651-01 22 31608350 31608350 C T LIMK2 5'UTR 0.18 TCGA-IB-7651-01 22 31669446 31669446 T C LIMK2 Missense_Mutation p.Y502H 0.18 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 22 31731752 31731752 C T PATZ1 Missense_Mutation p.R478Q 0.18 tolerated(0.07) benign(0.009) TCGA-IB-7651-01 22 31835923 31835923 G A EIF4ENIF1 Silent p.P967P 0.16 TCGA-IB-7651-01 22 31844161 31844161 G T EIF4ENIF1 Missense_Mutation p.P609H 0.16 deleterious(0.02) possibly_damaging(0.754) TCGA-IB-7651-01 22 31942888 31942888 A C SFI1 Missense_Mutation p.E127A 0.20 tolerated(0.09) benign(0.02) TCGA-IB-7651-01 22 32003945 32003945 C A SFI1 Missense_Mutation p.A727D 0.12 deleterious(0.01) benign(0.109) TCGA-IB-7651-01 22 32014362 32014362 C T SFI1 Silent p.A1229A 0.19 TCGA-IB-7651-01 22 32017820 32017820 G A PISD Missense_Mutation p.R91C 0.18 tolerated(0.16) probably_damaging(0.962) TCGA-IB-7651-01 22 32072826 32072826 C A PRR14L 3'Flank 0.14 TCGA-IB-7651-01 22 32215144 32215144 C T DEPDC5 Silent p.F601F 0.17 TCGA-IB-7651-01 22 32217617 32217617 C A DEPDC5 Missense_Mutation p.A667D 0.17 tolerated(0.11) benign(0.138) TCGA-IB-7651-01 22 32270272 32270272 C A DEPDC5 Missense_Mutation p.L1184M 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-IB-7651-01 22 32352162 32352162 C T YWHAH Nonsense_Mutation p.R42* 0.23 TCGA-IB-7651-01 22 32495260 32495260 G A SLC5A1 Silent p.Q457Q 0.19 TCGA-IB-7651-01 22 32586765 32586765 G T RFPL2 Silent p.A377A 0.15 TCGA-IB-7651-01 22 32808119 32808119 G A RTCB Silent p.L9L 0.19 TCGA-IB-7651-01 22 32810123 32810123 G T BPIFC 3'UTR 0.09 TCGA-IB-7651-01 22 32843277 32843277 G T BPIFC Missense_Mutation p.P99H 0.20 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 22 32875113 32875113 T C FBXO7 Missense_Mutation p.S90P 0.18 tolerated(0.34) benign(0.011) TCGA-IB-7651-01 22 32875119 32875119 G T FBXO7 Missense_Mutation p.D92Y 0.22 deleterious(0.01) possibly_damaging(0.62) TCGA-IB-7651-01 22 32894330 32894330 T C FBXO7 Missense_Mutation p.I461T 0.19 tolerated(0.06) benign(0.011) TCGA-IB-7651-01 22 32992713 32992713 G A SYN3 Missense_Mutation p.P241S 0.16 tolerated(0.1) unknown(0) TCGA-IB-7651-01 22 33255181 33255181 C T TIMP3 Silent p.Y151Y 0.15 TCGA-IB-7651-01 22 33255374 33255374 C T TIMP3 3'UTR 0.19 TCGA-IB-7651-01 22 33265005 33265005 G T SYN3 Missense_Mutation p.P190H 0.16 deleterious(0.02) unknown(0) TCGA-IB-7651-01 22 33402568 33402568 C T SYN3 Missense_Mutation p.R27H 0.16 deleterious(0) unknown(0) TCGA-IB-7651-01 22 35478605 35478605 C T ISX Silent p.D108D 0.16 TCGA-IB-7651-01 22 35680005 35680005 C T HMGXB4 Silent p.R422R 0.18 TCGA-IB-7651-01 22 35808506 35808506 G A MCM5 Missense_Mutation p.R308H 0.20 tolerated(0.07) benign(0.008) TCGA-IB-7651-01 22 35947670 35947670 C T RASD2 Missense_Mutation p.A131V 0.08 tolerated(0.64) benign(0.007) TCGA-IB-7651-01 22 35948146 35948146 G A RASD2 3'UTR 0.13 TCGA-IB-7651-01 22 36124810 36124810 G A APOL5 Silent p.Q389Q 0.15 TCGA-IB-7651-01 22 36537058 36537058 C T APOL3 3'UTR 0.10 TCGA-IB-7651-01 22 36537445 36537445 G A APOL3 Missense_Mutation p.R338W 0.17 deleterious(0.03) probably_damaging(0.98) TCGA-IB-7651-01 22 36623483 36623483 G T APOL2 Silent p.I327I 0.17 TCGA-IB-7651-01 22 36624001 36624001 G T APOL2 Missense_Mutation p.L155M 0.05 deleterious(0.04) benign(0.357) TCGA-IB-7651-01 22 36651007 36651007 G T APOL1 Missense_Mutation p.E18D 0.12 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-IB-7651-01 22 36661223 36661223 C A APOL1 Missense_Mutation p.A130D 0.18 tolerated(0.19) probably_damaging(0.999) TCGA-IB-7651-01 22 36705431 36705431 T G MYH9 Missense_Mutation p.K580T 0.09 benign(0.016) TCGA-IB-7651-01 22 36912757 36912757 C T EIF3D Silent p.A357A 0.18 TCGA-IB-7651-01 22 37196805 37196805 G T PVALB 3'UTR 0.29 TCGA-IB-7651-01 22 37334204 37334204 T C CSF2RB Missense_Mutation p.V785A 0.18 tolerated(1) benign(0.003) TCGA-IB-7651-01 22 37387247 37387247 G A TEX33 Silent p.N272N 0.19 TCGA-IB-7651-01 22 37462993 37462993 C A TMPRSS6 Missense_Mutation p.S717I 0.17 deleterious(0) probably_damaging(0.931) TCGA-IB-7651-01 22 37499282 37499282 G A TMPRSS6 Missense_Mutation p.A68V 0.21 tolerated(0.74) benign(0) TCGA-IB-7651-01 22 37524621 37524621 C T IL2RB Missense_Mutation p.D391N 0.23 tolerated(0.26) benign(0.017) TCGA-IB-7651-01 22 37531435 37531435 G A IL2RB Missense_Mutation p.L251F 0.08 deleterious(0.01) benign(0.093) TCGA-IB-7651-01 22 37578258 37578258 G A C1QTNF6 Silent p.S269S 0.21 TCGA-IB-7651-01 22 37578293 37578293 A G C1QTNF6 Missense_Mutation p.Y258H 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 22 37637646 37637646 C T RAC2 Missense_Mutation p.G30R 0.19 deleterious_low_confidence(0.04) probably_damaging(1) TCGA-IB-7651-01 22 37769443 37769443 C T ELFN2 Missense_Mutation p.S711N 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 22 37769658 37769658 G A ELFN2 Silent p.S639S 0.19 TCGA-IB-7651-01 22 37771157 37771157 C T ELFN2 Missense_Mutation p.E140K 0.19 deleterious(0.02) probably_damaging(0.969) TCGA-IB-7651-01 22 37892461 37892461 G A CARD10 Missense_Mutation p.S685L 0.19 tolerated(0.65) benign(0) TCGA-IB-7651-01 22 38019351 38019351 G T GGA1 Missense_Mutation p.E209D 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-IB-7651-01 22 38038957 38038957 G A SH3BP1 Missense_Mutation p.E114K 0.15 deleterious(0.01) probably_damaging(0.988) TCGA-IB-7651-01 22 38043498 38043498 G A SH3BP1 Missense_Mutation p.R390H 0.18 deleterious(0.04) benign(0.315) TCGA-IB-7651-01 22 38120147 38120147 A G TRIOBP Silent p.T528T 0.11 TCGA-IB-7651-01 22 38165063 38165063 C T TRIOBP Silent p.L2202L 0.15 TCGA-IB-7651-01 22 38208974 38208974 C T GCAT Silent p.D162D 0.16 TCGA-IB-7651-01 22 38273869 38273869 G A EIF3L Silent p.S422S 0.16 TCGA-IB-7651-01 22 38308394 38308394 G A MICALL1 Missense_Mutation p.A78T 0.17 deleterious(0) probably_damaging(0.966) TCGA-IB-7651-01 22 38308422 38308422 C A MICALL1 Missense_Mutation p.S87Y 0.21 deleterious(0) possibly_damaging(0.517) TCGA-IB-7651-01 22 38308468 38308468 G T MICALL1 Missense_Mutation p.Q102H 0.11 deleterious(0) probably_damaging(0.941) TCGA-IB-7651-01 22 38323737 38323737 G A MICALL1 Silent p.K595K 0.18 TCGA-IB-7651-01 22 38470346 38470346 C T PICK1 Silent p.T289T 0.19 TCGA-IB-7651-01 22 38505149 38505149 C T BAIAP2L2 Missense_Mutation p.A40T 0.16 deleterious(0.03) possibly_damaging(0.716) TCGA-IB-7651-01 22 38512102 38512102 C A PLA2G6 Missense_Mutation p.R620M 0.18 deleterious(0.01) possibly_damaging(0.608) TCGA-IB-7651-01 22 38516823 38516823 T C PLA2G6 Missense_Mutation p.E562G 0.14 deleterious(0.01) possibly_damaging(0.59) TCGA-IB-7651-01 22 38531004 38531004 C A PLA2G6 Missense_Mutation p.K295N 0.17 deleterious(0.03) probably_damaging(0.996) TCGA-IB-7651-01 22 38610487 38610487 T C MAFF Missense_Mutation p.S33P 0.11 deleterious(0) probably_damaging(0.966) TCGA-IB-7651-01 22 38610560 38610560 G A MAFF Missense_Mutation p.R57H 0.20 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 22 38823648 38823648 C T KCNJ4 Missense_Mutation p.D164N 0.20 tolerated(0.32) probably_damaging(0.963) TCGA-IB-7651-01 22 38823876 38823876 C A KCNJ4 Nonsense_Mutation p.E88* 0.19 TCGA-IB-7651-01 22 38877488 38877488 G T KDELR3 Missense_Mutation p.S208I 0.19 tolerated(0.38) benign(0.002) TCGA-IB-7651-01 22 38933650 38933650 G A DMC1 Silent p.N261N 0.17 TCGA-IB-7651-01 22 38964310 38964310 A C DMC1 Intron 0.21 TCGA-IB-7651-01 22 39067160 39067160 C A CBY1 Silent p.L90L 0.20 TCGA-IB-7651-01 22 39135889 39135889 G A SUN2 Silent p.R493R 0.17 TCGA-IB-7651-01 22 39176946 39176946 G T DNAL4 Missense_Mutation p.F46L 0.19 tolerated(0.09) benign(0.089) TCGA-IB-7651-01 22 39418964 39418964 C T APOBEC3D Missense_Mutation p.T52I 0.17 tolerated(0.09) benign(0.303) TCGA-IB-7651-01 22 39482486 39482486 G A APOBEC3G Missense_Mutation p.R313H 0.17 tolerated(0.1) benign(0.025) TCGA-IB-7651-01 22 39499877 39499877 G A APOBEC3H 3'UTR 0.09 TCGA-IB-7651-01 22 39770548 39770548 C T SYNGR1 Silent p.I109I 0.17 TCGA-IB-7651-01 22 39777719 39777719 G T SYNGR1 Missense_Mutation p.A168S 0.19 tolerated(0.06) benign(0.316) TCGA-IB-7651-01 22 39822803 39822803 C T TAB1 Silent p.S339S 0.20 TCGA-IB-7651-01 22 39883623 39883623 G A MGAT3 Missense_Mutation p.E91K 0.20 tolerated_low_confidence(0.63) benign(0.163) TCGA-IB-7651-01 22 39966944 39966944 C T CACNA1I Nonsense_Mutation p.R63* 0.14 TCGA-IB-7651-01 22 40060787 40060787 G A CACNA1I Missense_Mutation p.R1237H 0.11 deleterious(0) possibly_damaging(0.812) TCGA-IB-7651-01 22 40060793 40060793 G T CACNA1I Missense_Mutation p.S1239I 0.11 deleterious(0) possibly_damaging(0.727) TCGA-IB-7651-01 22 40139654 40139654 G A ENTHD1 3'UTR 0.19 TCGA-IB-7651-01 22 40367030 40367030 G A GRAP2 Missense_Mutation p.R312H 0.17 deleterious(0.01) possibly_damaging(0.708) TCGA-IB-7651-01 22 40417900 40417900 C T FAM83F Silent p.T462T 0.15 TCGA-IB-7651-01 22 40749110 40749110 C T ADSL Missense_Mutation p.L131F 0.21 deleterious(0.01) possibly_damaging(0.457) TCGA-IB-7651-01 22 40803436 40803436 G T SGSM3 Missense_Mutation p.S463I 0.19 deleterious(0) possibly_damaging(0.495) TCGA-IB-7651-01 22 40814828 40814828 C T MKL1 Silent p.T538T 0.19 TCGA-IB-7651-01 22 40817021 40817021 C T MKL1 Silent p.K237K 0.18 TCGA-IB-7651-01 22 41076968 41076968 C T MCHR1 Missense_Mutation p.T102M 0.16 tolerated(0.11) benign(0.025) TCGA-IB-7651-01 22 41077050 41077050 G A MCHR1 Silent p.T129T 0.17 TCGA-IB-7651-01 22 41166939 41166939 G T SLC25A17 Missense_Mutation p.L275M 0.17 deleterious(0) probably_damaging(0.938) TCGA-IB-7651-01 22 41252472 41252472 T C ST13 Missense_Mutation p.T25A 0.15 tolerated(0.78) benign(0) TCGA-IB-7651-01 22 41257476 41257476 C T DNAJB7 Missense_Mutation p.A175T 0.18 tolerated(0.11) benign(0.335) TCGA-IB-7651-01 22 41282489 41282489 A C XPNPEP3 Silent p.R254R 0.18 TCGA-IB-7651-01 22 41282496 41282496 A G XPNPEP3 Missense_Mutation p.I257V 0.22 tolerated(0.3) benign(0.005) TCGA-IB-7651-01 22 41513320 41513320 C T EP300 Missense_Mutation p.A75V 0.24 unknown(0) TCGA-IB-7651-01 22 41572357 41572357 C T EP300 Missense_Mutation p.A1629V 0.20 probably_damaging(0.934) TCGA-IB-7651-01 22 41574502 41574502 C T EP300 Nonsense_Mutation p.R2263* 0.06 TCGA-IB-7651-01 22 41610053 41610053 C A L3MBTL2 Intron 0.16 TCGA-IB-7651-01 22 41621043 41621043 C A L3MBTL2 Missense_Mutation p.L442M 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 22 41645753 41645753 C T RANGAP1 Missense_Mutation p.V518M 0.18 deleterious(0) probably_damaging(0.958) TCGA-IB-7651-01 22 41650462 41650462 T C RANGAP1 Silent p.E370E 0.19 TCGA-IB-7651-01 22 41723231 41723231 G T ZC3H7B Nonsense_Mutation p.E103* 0.17 TCGA-IB-7651-01 22 41742154 41742154 G T ZC3H7B Missense_Mutation p.S536I 0.16 deleterious(0.02) benign(0.271) TCGA-IB-7651-01 22 41747608 41747608 G A ZC3H7B Nonsense_Mutation p.W664* 0.14 TCGA-IB-7651-01 22 41753416 41753416 G A ZC3H7B Missense_Mutation p.A973T 0.19 tolerated_low_confidence(0.34) unknown(0) TCGA-IB-7651-01 22 41790200 41790200 C T TEF Silent p.L192L 0.15 TCGA-IB-7651-01 22 41973220 41973220 C A PMM1 3'UTR 0.16 TCGA-IB-7651-01 22 41985818 41985818 G T PMM1 5'UTR 0.21 TCGA-IB-7651-01 22 42033677 42033677 G T XRCC6 Missense_Mutation p.D219Y 0.13 deleterious(0) probably_damaging(0.983) TCGA-IB-7651-01 22 42128307 42128307 G A MEI1 Silent p.L385L 0.28 TCGA-IB-7651-01 22 42128519 42128519 G T MEI1 Missense_Mutation p.D415Y 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 22 42154490 42154490 G A MEI1 Silent p.Q691Q 0.15 TCGA-IB-7651-01 22 42209411 42209411 G A CCDC134 Missense_Mutation p.V152I 0.19 tolerated(0.18) benign(0.011) TCGA-IB-7651-01 22 42266957 42266957 G A SREBF2 Missense_Mutation p.G262D 0.19 deleterious(0.03) probably_damaging(1) TCGA-IB-7651-01 22 42321490 42321490 G T TNFRSF13C Missense_Mutation p.P146T 0.07 tolerated(0.05) benign(0.211) TCGA-IB-7651-01 22 42390772 42390772 C A SEPT3 Intron 0.10 TCGA-IB-7651-01 22 42416055 42416055 G T WBP2NL Missense_Mutation p.D121Y 0.18 deleterious(0) probably_damaging(0.925) TCGA-IB-7651-01 22 42482233 42482233 C A NDUFA6 Missense_Mutation p.R140M 0.20 deleterious(0) benign(0.146) TCGA-IB-7651-01 22 42525823 42525823 G A CYP2D6 Missense_Mutation p.A90V 0.16 tolerated(0.33) possibly_damaging(0.6) TCGA-IB-7651-01 22 42605786 42605786 G T TCF20 Silent p.I1842I 0.04 TCGA-IB-7651-01 22 42607439 42607439 G A TCF20 Silent p.G1291G 0.19 TCGA-IB-7651-01 22 42609324 42609324 C T TCF20 Missense_Mutation p.S663N 0.18 benign(0.012) TCGA-IB-7651-01 22 42609754 42609754 C A TCF20 Missense_Mutation p.D520Y 0.19 probably_damaging(0.999) TCGA-IB-7651-01 22 42609955 42609955 A G TCF20 Silent p.L453L 0.07 TCGA-IB-7651-01 22 42611246 42611246 G A TCF20 Silent p.H22H 0.16 TCGA-IB-7651-01 22 42967184 42967184 C T SERHL2 Silent p.L236L 0.21 TCGA-IB-7651-01 22 42972987 42972987 T G SERHL2 3'Flank 0.11 TCGA-IB-7651-01 22 42981253 42981253 C T POLDIP3 3'UTR 0.29 TCGA-IB-7651-01 22 42988051 42988051 G A POLDIP3 Silent p.L311L 0.16 TCGA-IB-7651-01 22 43032837 43032837 G T CYB5R3 Missense_Mutation p.L46I 0.13 tolerated(0.29) benign(0.01) TCGA-IB-7651-01 22 43435619 43435619 C A TTLL1 3'Flank 0.19 TCGA-IB-7651-01 22 43442432 43442432 C T TTLL1 Missense_Mutation p.G376S 0.04 deleterious(0.01) possibly_damaging(0.499) TCGA-IB-7651-01 22 43442565 43442565 C T TTLL1 Silent p.P331P 0.20 TCGA-IB-7651-01 22 43459836 43459836 C T TTLL1 Missense_Mutation p.A244T 0.18 deleterious(0) possibly_damaging(0.858) TCGA-IB-7651-01 22 43529075 43529075 G T MCAT Missense_Mutation p.L383M 0.16 tolerated_low_confidence(0.09) benign(0.188) TCGA-IB-7651-01 22 43623456 43623456 G A SCUBE1 Silent p.C377C 0.21 TCGA-IB-7651-01 22 43634902 43634902 G A SCUBE1 Silent p.G262G 0.23 TCGA-IB-7651-01 22 43687117 43687117 T G SCUBE1 Missense_Mutation p.E140A 0.22 deleterious(0) possibly_damaging(0.815) TCGA-IB-7651-01 22 43687179 43687179 G A SCUBE1 Silent p.D119D 0.20 TCGA-IB-7651-01 22 43936061 43936061 G A EFCAB6 Silent p.L1275L 0.15 TCGA-IB-7651-01 22 43950755 43950755 G A EFCAB6 Silent p.D1214D 0.19 TCGA-IB-7651-01 22 44028018 44028018 C A EFCAB6 Missense_Mutation p.K733N 0.18 tolerated(0.15) possibly_damaging(0.575) TCGA-IB-7651-01 22 44074024 44074024 G A EFCAB6 Missense_Mutation p.T424I 0.20 deleterious(0.02) benign(0.076) TCGA-IB-7651-01 22 44131843 44131843 C T EFCAB6 Missense_Mutation p.A180T 0.18 tolerated(0.18) possibly_damaging(0.906) TCGA-IB-7651-01 22 44234874 44234874 C A SULT4A1 Splice_Site p.X128_splice 0.19 TCGA-IB-7651-01 22 44364674 44364674 G A SAMM50 Missense_Mutation p.D100N 0.18 tolerated(0.54) benign(0.004) TCGA-IB-7651-01 22 44368749 44368749 A C SAMM50 Splice_Site p.X144_splice 0.13 TCGA-IB-7651-01 22 44559756 44559756 G A PARVB Missense_Mutation p.A355T 0.11 deleterious(0) probably_damaging(0.98) TCGA-IB-7651-01 22 44583713 44583713 C T PARVG Silent p.L68L 0.18 TCGA-IB-7651-01 22 44586501 44586501 C T PARVG Silent p.D153D 0.18 TCGA-IB-7651-01 22 44602221 44602221 G T PARVG Missense_Mutation p.S304I 0.15 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 22 44681381 44681381 G A KIAA1644 Missense_Mutation p.P176S 0.18 tolerated_low_confidence(0.46) benign(0.003) TCGA-IB-7651-01 22 44892553 44892553 C T LDOC1L 3'UTR 0.06 TCGA-IB-7651-01 22 44893032 44893032 C A LDOC1L Missense_Mutation p.E135D 0.18 tolerated(0.43) possibly_damaging(0.801) TCGA-IB-7651-01 22 44893044 44893044 C T LDOC1L Silent p.P131P 0.17 TCGA-IB-7651-01 22 44965315 44965315 C T LINC00207 RNA 0.17 TCGA-IB-7651-01 22 45132743 45132743 C T PRR5 Silent p.N284N 0.21 TCGA-IB-7651-01 22 45255624 45255624 C T PRR5-ARHGAP8 Silent p.S507S 0.15 TCGA-IB-7651-01 22 45309858 45309858 G A PHF21B Silent p.L225L 0.20 TCGA-IB-7651-01 22 45567527 45567527 C A NUP50 Missense_Mutation p.A39D 0.15 deleterious(0.04) possibly_damaging(0.864) TCGA-IB-7651-01 22 45577225 45577225 A C NUP50 Missense_Mutation p.E354D 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 22 45601152 45601152 C A KIAA0930 Missense_Mutation p.E159D 0.18 tolerated(0.18) possibly_damaging(0.669) TCGA-IB-7651-01 22 45608114 45608114 G A KIAA0930 Intron 0.16 TCGA-IB-7651-01 22 45740419 45740419 A G SMC1B 3'UTR 0.19 TCGA-IB-7651-01 22 45767427 45767427 G A SMC1B Missense_Mutation p.S746F 0.24 tolerated(0.58) possibly_damaging(0.884) TCGA-IB-7651-01 22 45960974 45960974 A G FBLN1 Intron 0.11 TCGA-IB-7651-01 22 45970515 45970515 G A FBLN1 Missense_Mutation p.E608K 0.24 tolerated(0.2) possibly_damaging(0.651) TCGA-IB-7651-01 22 46125440 46125440 G A ATXN10 Silent p.K288K 0.20 TCGA-IB-7651-01 22 46614253 46614253 T C PPARA Missense_Mutation p.Y155H 0.19 deleterious(0.05) probably_damaging(0.923) TCGA-IB-7651-01 22 46653832 46653832 T G PKDREJ Missense_Mutation p.Q1796H 0.10 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 22 46655499 46655499 G A PKDREJ Missense_Mutation p.R1241C 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 22 46655796 46655796 G A PKDREJ Missense_Mutation p.R1142W 0.18 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 22 46655931 46655931 T C PKDREJ Missense_Mutation p.I1097V 0.09 tolerated(0.08) benign(0.324) TCGA-IB-7651-01 22 46655993 46655993 G A PKDREJ Missense_Mutation p.T1076I 0.16 tolerated(0.05) benign(0.049) TCGA-IB-7651-01 22 46656713 46656713 G T PKDREJ Missense_Mutation p.S836Y 0.20 tolerated(0.19) possibly_damaging(0.646) TCGA-IB-7651-01 22 46657717 46657717 A G PKDREJ Silent p.G501G 0.19 TCGA-IB-7651-01 22 46685356 46685356 C T TTC38 Silent p.C380C 0.11 TCGA-IB-7651-01 22 46704391 46704391 G T GTSE1 Missense_Mutation p.A105S 0.22 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 22 46712143 46712143 G T GTSE1 Missense_Mutation p.Q422H 0.15 tolerated(0.08) benign(0.045) TCGA-IB-7651-01 22 46787161 46787161 C T CELSR1 Missense_Mutation p.A2058T 0.20 tolerated(0.2) probably_damaging(0.967) TCGA-IB-7651-01 22 46859644 46859644 G A CELSR1 Silent p.R1381R 0.18 TCGA-IB-7651-01 22 46930291 46930291 C T CELSR1 Missense_Mutation p.R926H 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 22 46931735 46931735 C T CELSR1 Missense_Mutation p.V445M 0.25 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 22 47116880 47116880 C T CERK Missense_Mutation p.A59T 0.17 tolerated(0.58) benign(0.005) TCGA-IB-7651-01 22 47193447 47193447 G A TBC1D22A Silent p.A189A 0.20 TCGA-IB-7651-01 22 47393552 47393552 C A TBC1D22A Missense_Mutation p.P383H 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 22 47569242 47569242 C T TBC1D22A Silent p.A509A 0.12 TCGA-IB-7651-01 22 47569358 47569358 G A TBC1D22A 3'UTR 0.13 TCGA-IB-7651-01 22 49042475 49042475 C T FAM19A5 Missense_Mutation p.T60M 0.15 tolerated(0.05) possibly_damaging(0.903) TCGA-IB-7651-01 22 50181041 50181041 C T BRD1 Missense_Mutation p.A821T 0.17 tolerated(1) benign(0) TCGA-IB-7651-01 22 50187865 50187865 C T BRD1 Missense_Mutation p.D726N 0.17 deleterious(0.03) probably_damaging(0.991) TCGA-IB-7651-01 22 50191584 50191584 C T BRD1 Missense_Mutation p.R656H 0.21 deleterious(0.01) possibly_damaging(0.766) TCGA-IB-7651-01 22 50277250 50277250 A T ZBED4 5'UTR 0.19 TCGA-IB-7651-01 22 50280636 50280636 C T ZBED4 Missense_Mutation p.A1109V 0.19 tolerated(0.29) benign(0.009) TCGA-IB-7651-01 22 50303569 50303569 C T ALG12 Missense_Mutation p.A213T 0.12 benign(0.089) TCGA-IB-7651-01 22 50307102 50307102 C A ALG12 Missense_Mutation p.V76L 0.09 benign(0.005) TCGA-IB-7651-01 22 50356818 50356818 C T PIM3 3'UTR 0.32 TCGA-IB-7651-01 22 50439631 50439631 G A IL17REL 5'UTR 0.12 TCGA-IB-7651-01 22 50454928 50454928 G A TTLL8 Missense_Mutation p.T772M 0.19 tolerated_low_confidence(0.27) benign(0.369) TCGA-IB-7651-01 22 50471771 50471771 C T TTLL8 Silent p.T397T 0.22 TCGA-IB-7651-01 22 50479664 50479664 G T TTLL8 Intron 0.18 TCGA-IB-7651-01 22 50480200 50480200 G A TTLL8 Missense_Mutation p.P263L 0.18 deleterious(0.02) possibly_damaging(0.455) TCGA-IB-7651-01 22 50493029 50493029 A C TTLL8 Intron 0.15 TCGA-IB-7651-01 22 50502477 50502477 G A MLC1 Missense_Mutation p.R349C 0.16 tolerated_low_confidence(0.14) possibly_damaging(0.736) TCGA-IB-7651-01 22 50552182 50552182 G T MOV10L1 Missense_Mutation p.K283N 0.20 tolerated(0.11) benign(0.013) TCGA-IB-7651-01 22 50564678 50564678 G A MOV10L1 Missense_Mutation p.E599K 0.17 deleterious(0.01) possibly_damaging(0.728) TCGA-IB-7651-01 22 50615556 50615556 G A PANX2 Missense_Mutation p.A139T 0.11 deleterious(0.03) possibly_damaging(0.813) TCGA-IB-7651-01 22 50617794 50617794 A G PANX2 3'UTR 0.32 TCGA-IB-7651-01 22 50635949 50635949 C T TRABD Silent p.I201I 0.20 TCGA-IB-7651-01 22 50648614 50648614 C T SELO Missense_Mutation p.T315M 0.23 tolerated(0.25) benign(0.225) TCGA-IB-7651-01 22 50655270 50655270 C T SELO Silent p.N551N 0.13 TCGA-IB-7651-01 22 50671771 50671771 C T TUBGCP6 Missense_Mutation p.V364M 0.14 tolerated(0.07) benign(0.211) TCGA-IB-7651-01 22 50682221 50682221 G A TUBGCP6 Missense_Mutation p.T223I 0.15 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 22 50695062 50695062 C T MAPK12 Missense_Mutation p.G157D 0.18 deleterious(0.02) probably_damaging(0.914) TCGA-IB-7651-01 22 50703358 50703358 G T MAPK11 3'UTR 0.21 TCGA-IB-7651-01 22 50705581 50705581 G T MAPK11 Missense_Mutation p.A157D 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 22 50719911 50719911 G A PLXNB2 Silent p.R1180R 0.19 TCGA-IB-7651-01 22 50728054 50728054 G A PLXNB2 Silent p.H320H 0.18 TCGA-IB-7651-01 22 50728347 50728347 C T PLXNB2 Missense_Mutation p.E223K 0.18 tolerated(0.76) probably_damaging(0.997) TCGA-IB-7651-01 22 50752138 50752138 G A DENND6B Missense_Mutation p.R407W 0.19 deleterious(0) possibly_damaging(0.776) TCGA-IB-7651-01 22 50853043 50853043 C A PPP6R2 Silent p.T159T 0.13 TCGA-IB-7651-01 22 50903334 50903334 C T SBF1 Missense_Mutation p.E449K 0.16 tolerated(0.33) benign(0.031) TCGA-IB-7651-01 22 50904432 50904432 C T SBF1 Silent p.L323L 0.16 TCGA-IB-7651-01 22 50905844 50905844 C A SBF1 Nonsense_Mutation p.E158* 0.21 TCGA-IB-7651-01 22 50921212 50921212 C A ADM2 Silent p.G109G 0.17 TCGA-IB-7651-01 22 50944481 50944481 C T LMF2 Missense_Mutation p.A253T 0.20 tolerated(0.43) benign(0.049) TCGA-IB-7651-01 22 50987929 50987929 C A KLHDC7B Missense_Mutation p.A445D 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 22 51009709 51009709 A C CPT1B Missense_Mutation p.F585V 0.24 deleterious(0.01) benign(0.148) TCGA-IB-7651-01 22 51011411 51011411 G A CPT1B Silent p.A415A 0.21 TCGA-IB-7651-01 22 51012041 51012041 C A CPT1B Missense_Mutation p.Q358H 0.17 tolerated(0.13) benign(0.002) TCGA-IB-7651-01 22 51012062 51012062 G A CPT1B Silent p.G351G 0.10 TCGA-IB-7651-01 22 51014508 51014508 G A CPT1B Nonsense_Mutation p.R245* 0.18 TCGA-IB-7651-01 22 51043397 51043397 G A MAPK8IP2 Missense_Mutation p.G556D 0.19 tolerated(0.63) benign(0.002) TCGA-IB-7651-01 22 51063696 51063696 G A ARSA Silent p.D469D 0.22 TCGA-IB-7651-01 22 51142313 51142313 G T SHANK3 Silent p.R562R 0.13 TCGA-IB-7651-01 22 51182561 51182561 A C ACR Missense_Mutation p.Q213P 0.11 deleterious(0.02) probably_damaging(0.917) TCGA-IB-7651-01 22 51208393 51208393 T C RABL2B Missense_Mutation p.T117A 0.08 tolerated(0.48) benign(0.001) TCGA-IB-7651-01 2 100011029 100011029 A G EIF5B Missense_Mutation p.M1024V 0.25 probably_damaging(0.965) TCGA-IB-7651-01 2 100029261 100029261 G A REV1 Missense_Mutation p.P702S 0.25 deleterious(0.01) probably_damaging(0.944) TCGA-IB-7651-01 2 100209827 100209827 G T AFF3 Missense_Mutation p.L791I 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 100210030 100210030 G A AFF3 Missense_Mutation p.A723V 0.26 tolerated(0.32) benign(0.022) TCGA-IB-7651-01 2 100210308 100210308 G A AFF3 Silent p.P630P 0.29 TCGA-IB-7651-01 2 100266103 100266103 C T AFF3 Missense_Mutation p.R415H 0.17 tolerated(0.14) benign(0.002) TCGA-IB-7651-01 2 10045080 10045080 C A TAF1B Nonsense_Mutation p.C300* 0.17 TCGA-IB-7651-01 2 100453987 100453987 C A AFF3 Splice_Site p.X317_splice 0.07 TCGA-IB-7651-01 2 10051681 10051681 A G TAF1B Missense_Mutation p.K392R 0.16 tolerated(0.09) benign(0.015) TCGA-IB-7651-01 2 100623808 100623808 T C AFF3 Missense_Mutation p.K122E 0.25 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 2 10073915 10073915 T C TAF1B Silent p.Y523Y 0.26 TCGA-IB-7651-01 2 100903511 100903511 C A LONRF2 Missense_Mutation p.E645D 0.23 tolerated(0.55) benign(0.133) TCGA-IB-7651-01 2 101010006 101010006 C T CHST10 Missense_Mutation p.D258N 0.16 deleterious(0.02) benign(0.027) TCGA-IB-7651-01 2 10101440 10101440 C T GRHL1 Missense_Mutation p.R182W 0.16 deleterious(0) possibly_damaging(0.852) TCGA-IB-7651-01 2 101099741 101099741 T G NMS 3'UTR 0.16 TCGA-IB-7651-01 2 101186141 101186141 C T PDCL3 Missense_Mutation p.A109V 0.08 deleterious(0.01) probably_damaging(0.963) TCGA-IB-7651-01 2 101584767 101584767 C T NPAS2 Missense_Mutation p.S311L 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 101587499 101587499 A G NPAS2 Missense_Mutation p.D368G 0.25 deleterious(0) benign(0.169) TCGA-IB-7651-01 2 101606760 101606760 G T NPAS2 Missense_Mutation p.G624C 0.22 tolerated(0.19) benign(0.027) TCGA-IB-7651-01 2 101624596 101624596 G T TBC1D8 Missense_Mutation p.S1037Y 0.28 deleterious(0.04) possibly_damaging(0.553) TCGA-IB-7651-01 2 101624689 101624689 T C TBC1D8 Missense_Mutation p.E1006G 0.27 tolerated(0.42) benign(0.012) TCGA-IB-7651-01 2 10192541 10192541 C A KLF11 Silent p.I482I 0.25 TCGA-IB-7651-01 2 102625012 102625012 G A IL1R2 5'UTR 0.15 TCGA-IB-7651-01 2 102641091 102641091 G A IL1R2 Missense_Mutation p.S283N 0.16 tolerated(0.53) benign(0.001) TCGA-IB-7651-01 2 102818144 102818144 C T IL1RL2 Silent p.Y206Y 0.16 TCGA-IB-7651-01 2 103068334 103068334 T C IL18RAP Missense_Mutation p.V498A 0.18 deleterious(0.02) possibly_damaging(0.768) TCGA-IB-7651-01 2 103141507 103141507 C A SLC9A4 Missense_Mutation p.L615I 0.24 deleterious(0) possibly_damaging(0.751) TCGA-IB-7651-01 2 103300642 103300642 G A SLC9A2 Silent p.L424L 0.09 TCGA-IB-7651-01 2 103325026 103325026 G A SLC9A2 3'UTR 0.10 TCGA-IB-7651-01 2 103353247 103353247 T C MFSD9 Missense_Mutation p.D8G 0.09 tolerated_low_confidence(0.79) benign(0) TCGA-IB-7651-01 2 103378707 103378707 G T TMEM182 Missense_Mutation p.A11S 0.19 deleterious(0.02) benign(0.003) TCGA-IB-7651-01 2 103414328 103414328 G A TMEM182 Missense_Mutation p.R113H 0.27 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 2 103431254 103431254 G A TMEM182 Missense_Mutation p.A173T 0.23 tolerated(0.39) probably_damaging(0.989) TCGA-IB-7651-01 2 10350578 10350578 T C C2orf48 Missense_Mutation p.F112S 0.20 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-IB-7651-01 2 105716263 105716263 C T MRPS9 3'UTR 0.11 TCGA-IB-7651-01 2 105915065 105915065 C T TGFBRAP1 Silent p.A262A 0.27 TCGA-IB-7651-01 2 105924245 105924245 C T TGFBRAP1 Missense_Mutation p.A172T 0.17 tolerated(0.22) possibly_damaging(0.603) TCGA-IB-7651-01 2 105954037 105954037 C T C2orf49 5'UTR 0.20 TCGA-IB-7651-01 2 105977891 105977891 C T FHL2 Missense_Mutation p.G230E 0.15 deleterious(0.01) probably_damaging(0.99) TCGA-IB-7651-01 2 106471526 106471526 G A NCK2 Missense_Mutation p.E3K 0.14 deleterious(0.01) probably_damaging(0.986) TCGA-IB-7651-01 2 106498449 106498449 G A NCK2 Missense_Mutation p.A298T 0.09 tolerated(0.08) benign(0.342) TCGA-IB-7651-01 2 106509467 106509467 G A NCK2 Silent p.A326A 0.27 TCGA-IB-7651-01 2 106690369 106690369 C T C2orf40 Missense_Mutation p.A52V 0.14 deleterious(0.02) benign(0.027) TCGA-IB-7651-01 2 106694297 106694297 G A C2orf40 Missense_Mutation p.R121H 0.26 tolerated(0.9) benign(0.026) TCGA-IB-7651-01 2 106739525 106739525 A G UXS1 Silent p.S220S 0.18 TCGA-IB-7651-01 2 106781241 106781241 C A UXS1 Missense_Mutation p.R46M 0.23 deleterious_low_confidence(0) benign(0.341) TCGA-IB-7651-01 2 107040250 107040250 C T RGPD3 Silent p.K1391K 0.26 TCGA-IB-7651-01 2 107040937 107040937 C T RGPD3 Silent p.Q1162Q 0.15 TCGA-IB-7651-01 2 107041463 107041463 C T RGPD3 Missense_Mutation p.G987D 0.21 deleterious(0) possibly_damaging(0.599) TCGA-IB-7651-01 2 107053042 107053042 A G RGPD3 Missense_Mutation p.F488L 0.16 deleterious(0.01) possibly_damaging(0.878) TCGA-IB-7651-01 2 10712235 10712235 G T NOL10 Missense_Mutation p.L677M 0.26 deleterious(0.01) probably_damaging(0.989) TCGA-IB-7651-01 2 108609485 108609485 C T SLC5A7 Missense_Mutation p.P117L 0.25 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 2 108609533 108609533 C T SLC5A7 Missense_Mutation p.P133L 0.17 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 2 108622641 108622641 C A SLC5A7 Missense_Mutation p.A293D 0.07 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 2 108626966 108626966 C T SLC5A7 Silent p.G464G 0.14 TCGA-IB-7651-01 2 108924988 108924988 C A SULT1C2 3'UTR 0.25 TCGA-IB-7651-01 2 108998883 108998883 A G SULT1C4 Missense_Mutation p.K113R 0.17 tolerated(0.09) possibly_damaging(0.704) TCGA-IB-7651-01 2 109088536 109088536 A G GCC2 Silent p.E917E 0.23 TCGA-IB-7651-01 2 10912016 10912016 C T ATP6V1C2 Silent p.F174F 0.25 TCGA-IB-7651-01 2 10918751 10918751 G T ATP6V1C2 Missense_Mutation p.W339C 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-IB-7651-01 2 10931982 10931982 G T PDIA6 Missense_Mutation p.L175M 0.29 deleterious(0.04) possibly_damaging(0.725) TCGA-IB-7651-01 2 109352168 109352168 G T RANBP2 Missense_Mutation p.A196S 0.27 tolerated(0.22) benign(0.157) TCGA-IB-7651-01 2 109367806 109367806 C T RANBP2 Nonsense_Mutation p.R454* 0.23 TCGA-IB-7651-01 2 109380402 109380402 G A RANBP2 Missense_Mutation p.G1136D 0.17 tolerated(0.31) benign(0.158) TCGA-IB-7651-01 2 109383227 109383227 G T RANBP2 Nonsense_Mutation p.E2078* 0.26 TCGA-IB-7651-01 2 109383920 109383920 T C RANBP2 Missense_Mutation p.Y2309H 0.24 tolerated(0.77) benign(0.008) TCGA-IB-7651-01 2 109389383 109389383 A C RANBP2 Missense_Mutation p.K2725Q 0.09 deleterious(0.01) possibly_damaging(0.806) TCGA-IB-7651-01 2 109473334 109473334 C A CCDC138 Missense_Mutation p.A534D 0.26 deleterious(0) possibly_damaging(0.82) TCGA-IB-7651-01 2 109524431 109524431 C A EDAR Missense_Mutation p.S283I 0.29 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 2 109527229 109527229 G T EDAR Intron 0.33 TCGA-IB-7651-01 2 109964294 109964294 C T SH3RF3 Silent p.S246S 0.30 TCGA-IB-7651-01 2 110036048 110036048 G A SH3RF3 Silent p.S451S 0.09 TCGA-IB-7651-01 2 110065683 110065683 G A SH3RF3 Missense_Mutation p.R629H 0.09 deleterious(0.01) probably_damaging(0.915) TCGA-IB-7651-01 2 110323436 110323436 C A SEPT10 Nonsense_Mutation p.G255* 0.09 TCGA-IB-7651-01 2 11052960 11052960 G T KCNF1 Missense_Mutation p.E136D 0.11 tolerated(0.2) benign(0.009) TCGA-IB-7651-01 2 110936030 110936030 G T NPHP1 Missense_Mutation p.A100D 0.26 deleterious(0.02) possibly_damaging(0.844) TCGA-IB-7651-01 2 111398943 111398943 C A BUB1 Silent p.V908V 0.17 TCGA-IB-7651-01 2 111551244 111551244 G A ACOXL Nonsense_Mutation p.W59* 0.14 TCGA-IB-7651-01 2 111559251 111559251 G A ACOXL Silent p.G190G 0.22 TCGA-IB-7651-01 2 112601003 112601003 C T ANAPC1 Missense_Mutation p.A676T 0.19 tolerated(0.83) benign(0.001) TCGA-IB-7651-01 2 112638284 112638284 C T ANAPC1 Missense_Mutation p.R40H 0.20 deleterious(0.02) probably_damaging(0.964) TCGA-IB-7651-01 2 112722774 112722774 C T MERTK Missense_Mutation p.T255M 0.16 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 2 11273597 11273597 G A C2orf50 Missense_Mutation p.C46Y 0.23 tolerated(1) benign(0.055) TCGA-IB-7651-01 2 112766019 112766019 G T MERTK Missense_Mutation p.D643Y 0.21 deleterious(0) probably_damaging(0.967) TCGA-IB-7651-01 2 112779036 112779036 G A MERTK Missense_Mutation p.G743S 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 112942917 112942917 G A FBLN7 Splice_Site p.X316_splice 0.06 TCGA-IB-7651-01 2 112944947 112944947 A G FBLN7 Missense_Mutation p.D395G 0.21 deleterious(0) benign(0.038) TCGA-IB-7651-01 2 113088934 113088934 C T ZC3H6 Silent p.G813G 0.15 TCGA-IB-7651-01 2 113147766 113147766 G A RGPD8 Missense_Mutation p.A919V 0.09 tolerated(0.08) benign(0.119) TCGA-IB-7651-01 2 113174916 113174916 C A RGPD8 Splice_Site p.X213_splice 0.08 TCGA-IB-7651-01 2 113309541 113309541 T C POLR1B Missense_Mutation p.Y318H 0.25 tolerated(0.14) benign(0.042) TCGA-IB-7651-01 2 113315647 113315647 G A POLR1B Missense_Mutation p.R440H 0.10 tolerated(0.17) benign(0.006) TCGA-IB-7651-01 2 113333196 113333196 C T POLR1B Silent p.L1100L 0.28 TCGA-IB-7651-01 2 11337362 11337362 T C ROCK2 Missense_Mutation p.D1131G 0.29 deleterious(0) probably_damaging(0.984) TCGA-IB-7651-01 2 113416788 113416788 G A SLC20A1 Silent p.V352V 0.23 TCGA-IB-7651-01 2 113416903 113416903 C A SLC20A1 Missense_Mutation p.L391I 0.17 tolerated(0.06) possibly_damaging(0.775) TCGA-IB-7651-01 2 113513898 113513898 G A CKAP2L Silent p.N350N 0.25 TCGA-IB-7651-01 2 113514322 113514322 G A CKAP2L Missense_Mutation p.P209L 0.14 deleterious(0) possibly_damaging(0.733) TCGA-IB-7651-01 2 113587867 113587867 T G IL1B 3'UTR 0.28 TCGA-IB-7651-01 2 113588108 113588108 G A IL1B Nonsense_Mutation p.R214* 0.12 TCGA-IB-7651-01 2 113940351 113940351 C A PSD4 Silent p.P106P 0.31 TCGA-IB-7651-01 2 113940800 113940800 G A PSD4 Missense_Mutation p.C256Y 0.18 tolerated_low_confidence(0.16) benign(0.068) TCGA-IB-7651-01 2 113955419 113955419 G A PSD4 Silent p.T851T 0.16 TCGA-IB-7651-01 2 114004419 114004419 C T PAX8 Missense_Mutation p.V35I 0.17 deleterious(0.01) probably_damaging(0.979) TCGA-IB-7651-01 2 114253508 114253508 T C CBWD2 3'UTR 0.18 TCGA-IB-7651-01 2 114257791 114257791 G A FOXD4L1 Missense_Mutation p.G320R 0.14 tolerated(0.12) benign(0.033) TCGA-IB-7651-01 2 114369567 114369567 C T RPL23AP7 RNA 0.15 TCGA-IB-7651-01 2 114391779 114391779 G T RABL2A Missense_Mutation p.A63S 0.12 tolerated(0.06) possibly_damaging(0.507) TCGA-IB-7651-01 2 114398497 114398497 C A RABL2A Silent p.T108T 0.13 TCGA-IB-7651-01 2 114476770 114476770 C A SLC35F5 Missense_Mutation p.R486I 0.13 tolerated(0.23) benign(0.118) TCGA-IB-7651-01 2 114501313 114501313 C A SLC35F5 Missense_Mutation p.S180I 0.20 tolerated(0.08) benign(0.034) TCGA-IB-7651-01 2 11597324 11597324 T C E2F6 Silent p.V48V 0.27 TCGA-IB-7651-01 2 116066831 116066831 G A DPP10 Missense_Mutation p.S30N 0.23 tolerated(1) benign(0.07) TCGA-IB-7651-01 2 116101424 116101424 G A DPP10 Silent p.L73L 0.18 TCGA-IB-7651-01 2 116101463 116101463 C T DPP10 Silent p.H86H 0.18 TCGA-IB-7651-01 2 116283483 116283483 A G DPP10 Missense_Mutation p.K130E 0.21 deleterious(0.02) benign(0.061) TCGA-IB-7651-01 2 11733252 11733252 G A GREB1 Missense_Mutation p.G566R 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 11738934 11738934 C T GREB1 Missense_Mutation p.P761S 0.25 tolerated(0.08) benign(0.423) TCGA-IB-7651-01 2 11756779 11756779 C T GREB1 Silent p.S1115S 0.12 TCGA-IB-7651-01 2 11777873 11777873 C T GREB1 Missense_Mutation p.A1793V 0.14 tolerated(0.58) benign(0.325) TCGA-IB-7651-01 2 118582670 118582670 C T DDX18 Missense_Mutation p.A454V 0.10 tolerated(0.1) possibly_damaging(0.463) TCGA-IB-7651-01 2 118583136 118583136 C T DDX18 Silent p.V494V 0.09 TCGA-IB-7651-01 2 118758448 118758448 C A CCDC93 Missense_Mutation p.E104D 0.06 deleterious(0.03) probably_damaging(0.996) TCGA-IB-7651-01 2 11922524 11922524 G T LPIN1 Missense_Mutation p.E434D 0.24 tolerated(0.18) benign(0.211) TCGA-IB-7651-01 2 119699912 119699912 C A MARCO Silent p.L12L 0.28 TCGA-IB-7651-01 2 119727762 119727762 G T MARCO Missense_Mutation p.S91I 0.11 tolerated(0.09) possibly_damaging(0.651) TCGA-IB-7651-01 2 119914429 119914429 G A C1QL2 Silent p.G271G 0.08 TCGA-IB-7651-01 2 120003362 120003362 C T STEAP3 Missense_Mutation p.S107F 0.29 deleterious(0.01) possibly_damaging(0.694) TCGA-IB-7651-01 2 120362359 120362359 G T PCDP1 Missense_Mutation p.Q301H 0.29 tolerated(0.62) benign(0.094) TCGA-IB-7651-01 2 120397378 120397378 C T PCDP1 Missense_Mutation p.H719Y 0.24 tolerated(0.12) benign(0.005) TCGA-IB-7651-01 2 120439135 120439135 G A TMEM177 Missense_Mutation p.A236T 0.10 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 120692377 120692377 C T PTPN4 Nonsense_Mutation p.R400* 0.08 TCGA-IB-7651-01 2 120692461 120692461 C T PTPN4 Missense_Mutation p.P428S 0.27 tolerated(0.37) benign(0.422) TCGA-IB-7651-01 2 120718447 120718447 C A PTPN4 Missense_Mutation p.T733N 0.11 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 121047235 121047235 C T RALB Missense_Mutation p.R135W 0.11 deleterious(0) possibly_damaging(0.881) TCGA-IB-7651-01 2 121742107 121742107 C T GLI2 Missense_Mutation p.R582W 0.11 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 2 121743937 121743937 C T GLI2 Silent p.G680G 0.05 TCGA-IB-7651-01 2 121744055 121744055 C T GLI2 Missense_Mutation p.R720C 0.07 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 2 122005784 122005784 C T TFCP2L1 Missense_Mutation p.E154K 0.08 deleterious(0) benign(0.385) TCGA-IB-7651-01 2 122220119 122220119 G A CLASP1 Missense_Mutation p.P310S 0.33 deleterious(0) possibly_damaging(0.792) TCGA-IB-7651-01 2 122489716 122489716 G T NIFK Missense_Mutation p.A103D 0.08 deleterious(0) probably_damaging(0.936) TCGA-IB-7651-01 2 122522723 122522723 T C TSN Missense_Mutation p.V156A 0.10 deleterious(0.01) probably_damaging(0.951) TCGA-IB-7651-01 2 122522981 122522981 G T TSN 3'UTR 0.29 TCGA-IB-7651-01 2 1243543 1243543 G A SNTG2 Missense_Mutation p.D295N 0.16 tolerated(0.08) benign(0.027) TCGA-IB-7651-01 2 124783243 124783243 C T CNTNAP5 Missense_Mutation p.R6W 0.10 tolerated_low_confidence(0.14) benign(0.003) TCGA-IB-7651-01 2 125521605 125521605 T G CNTNAP5 Missense_Mutation p.F804C 0.30 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 2 125530375 125530375 G A CNTNAP5 Splice_Site p.X844_splice 0.27 TCGA-IB-7651-01 2 125530402 125530402 G A CNTNAP5 Missense_Mutation p.D853N 0.25 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 2 125555694 125555694 C A CNTNAP5 Missense_Mutation p.A1004D 0.25 tolerated(0.11) benign(0.119) TCGA-IB-7651-01 2 127944832 127944832 G T CYP27C1 3'UTR 0.22 TCGA-IB-7651-01 2 127958808 127958808 C T CYP27C1 Missense_Mutation p.S93N 0.15 tolerated(0.07) probably_damaging(0.927) TCGA-IB-7651-01 2 128050320 128050320 C T ERCC3 Missense_Mutation p.V113M 0.24 tolerated(0.34) benign(0.064) TCGA-IB-7651-01 2 128065219 128065219 A G MAP3K2 Missense_Mutation p.V599A 0.19 tolerated(0.09) benign(0.164) TCGA-IB-7651-01 2 128088062 128088062 G A MAP3K2 Missense_Mutation p.T95I 0.22 tolerated(0.09) benign(0.115) TCGA-IB-7651-01 2 128186478 128186478 C T PROC Missense_Mutation p.H448Y 0.23 tolerated(0.18) benign(0.007) TCGA-IB-7651-01 2 128252466 128252466 A G IWS1 Missense_Mutation p.V594A 0.11 deleterious(0.03) probably_damaging(0.978) TCGA-IB-7651-01 2 128366289 128366289 C T MYO7B Silent p.L884L 0.22 TCGA-IB-7651-01 2 128380907 128380907 G T MYO7B Missense_Mutation p.S1233I 0.15 deleterious(0.02) benign(0.003) TCGA-IB-7651-01 2 128396850 128396850 G T LIMS2 3'UTR 0.17 TCGA-IB-7651-01 2 128408687 128408687 C T GPR17 Silent p.S154S 0.08 TCGA-IB-7651-01 2 128412001 128412001 C T LIMS2 Missense_Mutation p.G143D 0.18 deleterious(0.03) benign(0.028) TCGA-IB-7651-01 2 128471362 128471362 G A WDR33 Nonsense_Mutation p.R1035* 0.16 TCGA-IB-7651-01 2 128495607 128495607 C T WDR33 Intron 0.22 TCGA-IB-7651-01 2 128528552 128528552 C T WDR33 Missense_Mutation p.A2T 0.16 deleterious_low_confidence(0) benign(0.184) TCGA-IB-7651-01 2 128622692 128622692 C T AMMECR1L Silent p.P303P 0.08 TCGA-IB-7651-01 2 128627035 128627035 C A AMMECR1L Missense_Mutation p.K239N 0.24 tolerated(0.26) benign(0.094) TCGA-IB-7651-01 2 128699597 128699597 G A SAP130 Nonsense_Mutation p.R1079* 0.16 TCGA-IB-7651-01 2 128747250 128747250 C T SAP130 Silent p.Q582Q 0.13 TCGA-IB-7651-01 2 128747261 128747261 G A SAP130 Missense_Mutation p.P579S 0.13 tolerated_low_confidence(0.13) benign(0.061) TCGA-IB-7651-01 2 12880819 12880819 G A TRIB2 Missense_Mutation p.D311N 0.28 tolerated(0.55) benign(0.005) TCGA-IB-7651-01 2 128927887 128927887 G T UGGT1 Missense_Mutation p.G983W 0.14 deleterious(0.02) benign(0.02) TCGA-IB-7651-01 2 129026007 129026007 G A HS6ST1 Missense_Mutation p.T322M 0.24 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 129026052 129026052 G A HS6ST1 Missense_Mutation p.T307M 0.19 deleterious(0.02) benign(0.388) TCGA-IB-7651-01 2 130681192 130681192 C A AC079776.3 Intron 0.11 TCGA-IB-7651-01 2 130738170 130738170 A G RAB6C Missense_Mutation p.Y161C 0.08 deleterious_low_confidence(0.01) benign(0.326) TCGA-IB-7651-01 2 130877873 130877873 G A POTEF Silent p.C72C 0.04 TCGA-IB-7651-01 2 130925111 130925111 T G SMPD4 Missense_Mutation p.K277Q 0.10 tolerated(0.07) benign(0.071) TCGA-IB-7651-01 2 130948058 130948058 C T MZT2B Silent p.S112S 0.28 TCGA-IB-7651-01 2 130949639 130949639 C T TUBA3E Missense_Mutation p.R373Q 0.13 deleterious_low_confidence(0.02) possibly_damaging(0.853) TCGA-IB-7651-01 2 131486869 131486869 C A GPR148 Missense_Mutation p.L49M 0.27 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 2 131487621 131487621 G A GPR148 Nonsense_Mutation p.W299* 0.09 TCGA-IB-7651-01 2 131487809 131487809 C A GPR148 3'UTR 0.21 TCGA-IB-7651-01 2 131520443 131520443 C T AMER3 Silent p.N266N 0.28 TCGA-IB-7651-01 2 131521183 131521183 G A AMER3 Missense_Mutation p.R513H 0.21 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 131521670 131521670 C T AMER3 Silent p.G675G 0.14 TCGA-IB-7651-01 2 131797660 131797660 C T ARHGEF4 Silent p.G273G 0.33 TCGA-IB-7651-01 2 131813237 131813237 G A FAM168B Silent p.S62S 0.08 TCGA-IB-7651-01 2 131976037 131976037 G T POTEE Missense_Mutation p.R21M 0.06 deleterious_low_confidence(0) possibly_damaging(0.507) TCGA-IB-7651-01 2 131976082 131976082 G T POTEE Missense_Mutation p.R36M 0.08 deleterious_low_confidence(0) possibly_damaging(0.507) TCGA-IB-7651-01 2 131984434 131984434 A C POTEE Missense_Mutation p.Q283H 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.848) TCGA-IB-7651-01 2 132237733 132237733 G A TUBA3D Missense_Mutation p.R156Q 0.25 deleterious_low_confidence(0.04) benign(0.014) TCGA-IB-7651-01 2 132237952 132237952 G A TUBA3D Missense_Mutation p.R229H 0.05 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-IB-7651-01 2 132240441 132240441 C A TUBA3D 3'UTR 0.09 TCGA-IB-7651-01 2 132287250 132287250 C T CCDC74A Missense_Mutation p.T94I 0.09 deleterious(0.01) benign(0.259) TCGA-IB-7651-01 2 132289243 132289243 C T CCDC74A Missense_Mutation p.A184V 0.25 tolerated(0.18) benign(0.263) TCGA-IB-7651-01 2 132290261 132290261 C A CCDC74A Silent p.I261I 0.09 TCGA-IB-7651-01 2 132290277 132290277 C T CCDC74A Nonsense_Mutation p.R267* 0.08 TCGA-IB-7651-01 2 133402959 133402959 C T GPR39 Missense_Mutation p.T381I 0.25 tolerated(0.12) benign(0.004) TCGA-IB-7651-01 2 133402986 133402986 G A GPR39 Missense_Mutation p.R390H 0.10 deleterious(0.01) benign(0.011) TCGA-IB-7651-01 2 133403818 133403818 C A LYPD1 Missense_Mutation p.A76S 0.09 tolerated(0.16) probably_damaging(0.98) TCGA-IB-7651-01 2 133540637 133540637 T C NCKAP5 Silent p.R1249R 0.10 TCGA-IB-7651-01 2 133543008 133543008 C T NCKAP5 Missense_Mutation p.S459N 0.07 tolerated(0.13) possibly_damaging(0.628) TCGA-IB-7651-01 2 135028024 135028024 G A MGAT5 Silent p.K103K 0.10 TCGA-IB-7651-01 2 135199477 135199477 A G MGAT5 Missense_Mutation p.D673G 0.09 tolerated(0.27) benign(0.075) TCGA-IB-7651-01 2 135625046 135625046 G A ACMSD Intron 0.24 TCGA-IB-7651-01 2 135743506 135743506 G A MAP3K19 Missense_Mutation p.A979V 0.26 tolerated(0.26) possibly_damaging(0.845) TCGA-IB-7651-01 2 135743975 135743975 C A MAP3K19 Missense_Mutation p.D823Y 0.11 deleterious(0.03) possibly_damaging(0.659) TCGA-IB-7651-01 2 135920351 135920351 T C RAB3GAP1 Missense_Mutation p.I807T 0.28 tolerated(0.25) benign(0.002) TCGA-IB-7651-01 2 136033212 136033212 T G ZRANB3 Missense_Mutation p.E360D 0.10 tolerated(0.09) possibly_damaging(0.898) TCGA-IB-7651-01 2 136399206 136399206 A G R3HDM1 Silent p.A440A 0.08 TCGA-IB-7651-01 2 136409370 136409370 C T R3HDM1 Missense_Mutation p.P564L 0.24 deleterious(0) possibly_damaging(0.792) TCGA-IB-7651-01 2 136481753 136481753 C T R3HDM1 Missense_Mutation p.A1064V 0.09 deleterious(0.02) possibly_damaging(0.888) TCGA-IB-7651-01 2 136481790 136481790 T C R3HDM1 Silent p.V1076V 0.07 TCGA-IB-7651-01 2 136513182 136513182 T G UBXN4 Silent p.T143T 0.26 TCGA-IB-7651-01 2 136533888 136533888 T G UBXN4 Silent p.A340A 0.30 TCGA-IB-7651-01 2 136540441 136540441 C T UBXN4 Missense_Mutation p.S504F 0.28 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 136567505 136567505 G A LCT Silent p.G804G 0.26 TCGA-IB-7651-01 2 136570077 136570077 C T LCT Silent p.Q719Q 0.09 TCGA-IB-7651-01 2 136575093 136575093 C A LCT Nonsense_Mutation p.G509* 0.13 TCGA-IB-7651-01 2 136594308 136594308 G A LCT Silent p.T144T 0.28 TCGA-IB-7651-01 2 136602132 136602132 G A MCM6 Missense_Mutation p.H778Y 0.29 tolerated(0.16) benign(0.002) TCGA-IB-7651-01 2 136602208 136602208 G T MCM6 Nonsense_Mutation p.Y752* 0.08 TCGA-IB-7651-01 2 136610461 136610461 G A MCM6 Missense_Mutation p.R551C 0.25 deleterious(0) probably_damaging(0.969) TCGA-IB-7651-01 2 136610469 136610469 A G MCM6 Missense_Mutation p.I548T 0.25 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 2 136614334 136614334 G A MCM6 Silent p.F530F 0.31 TCGA-IB-7651-01 2 136627930 136627930 C T MCM6 Missense_Mutation p.V86I 0.28 tolerated(0.4) benign(0.031) TCGA-IB-7651-01 2 136673868 136673868 C T DARS Missense_Mutation p.R345K 0.09 tolerated(0.39) benign(0.005) TCGA-IB-7651-01 2 136872482 136872482 G T CXCR4 Missense_Mutation p.S343Y 0.13 deleterious(0.01) unknown(0) TCGA-IB-7651-01 2 137988686 137988686 G A THSD7B Missense_Mutation p.R599Q 0.07 deleterious(0.02) benign(0.417) TCGA-IB-7651-01 2 138373804 138373804 C A THSD7B Missense_Mutation p.N1164K 0.08 tolerated(0.65) unknown(0) TCGA-IB-7651-01 2 138724767 138724767 G A HNMT Intron 0.10 TCGA-IB-7651-01 2 139318378 139318378 C T SPOPL Nonsense_Mutation p.R240* 0.10 TCGA-IB-7651-01 2 139428394 139428394 G T NXPH2 3'UTR 0.19 TCGA-IB-7651-01 2 139428483 139428483 G A NXPH2 3'UTR 0.26 TCGA-IB-7651-01 2 140990894 140990894 G A LRP1B Missense_Mutation p.P4554L 0.09 possibly_damaging(0.713) TCGA-IB-7651-01 2 141032124 141032124 A C LRP1B Missense_Mutation p.I4337M 0.07 benign(0.308) TCGA-IB-7651-01 2 141113963 141113963 G T LRP1B Missense_Mutation p.F3826L 0.25 benign(0.153) TCGA-IB-7651-01 2 141200074 141200074 G A LRP1B Silent p.C3471C 0.29 TCGA-IB-7651-01 2 141208170 141208170 A G LRP1B Missense_Mutation p.C3342R 0.29 possibly_damaging(0.712) TCGA-IB-7651-01 2 141215049 141215049 G T LRP1B Missense_Mutation p.S3266Y 0.28 possibly_damaging(0.608) TCGA-IB-7651-01 2 141242946 141242946 A T LRP1B Missense_Mutation p.F3131I 0.27 benign(0.307) TCGA-IB-7651-01 2 141253268 141253268 A C LRP1B Missense_Mutation p.V2967G 0.35 possibly_damaging(0.637) TCGA-IB-7651-01 2 141283540 141283540 G A LRP1B Silent p.F2633F 0.05 TCGA-IB-7651-01 2 141359166 141359166 T C LRP1B Missense_Mutation p.D2281G 0.07 possibly_damaging(0.539) TCGA-IB-7651-01 2 141526881 141526881 C T LRP1B Missense_Mutation p.E1887K 0.10 benign(0.292) TCGA-IB-7651-01 2 141533752 141533752 T G LRP1B Missense_Mutation p.K1805N 0.08 benign(0.403) TCGA-IB-7651-01 2 141607868 141607868 C T LRP1B Missense_Mutation p.R1581H 0.08 possibly_damaging(0.522) TCGA-IB-7651-01 2 141641588 141641588 C T LRP1B Missense_Mutation p.V1323I 0.09 benign(0.001) TCGA-IB-7651-01 2 141665573 141665573 A G LRP1B Silent p.C1131C 0.29 TCGA-IB-7651-01 2 141747212 141747212 G A LRP1B Missense_Mutation p.P887S 0.08 probably_damaging(0.982) TCGA-IB-7651-01 2 141806690 141806690 T C LRP1B Missense_Mutation p.I552V 0.08 benign(0.031) TCGA-IB-7651-01 2 143685260 143685260 C A KYNU Missense_Mutation p.P108H 0.31 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 143742745 143742745 C A KYNU Silent p.S274S 0.07 TCGA-IB-7651-01 2 143959710 143959710 G T ARHGAP15 Missense_Mutation p.R58I 0.19 tolerated(0.07) probably_damaging(0.999) TCGA-IB-7651-01 2 143974006 143974006 G A ARHGAP15 Silent p.K96K 0.09 TCGA-IB-7651-01 2 144764985 144764985 A G GTDC1 Silent p.D213D 0.09 TCGA-IB-7651-01 2 145147139 145147139 T C ZEB2 Missense_Mutation p.D1175G 0.08 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-IB-7651-01 2 145155993 145155993 G A ZEB2 Nonsense_Mutation p.R921* 0.09 TCGA-IB-7651-01 2 145156911 145156911 G A ZEB2 Nonsense_Mutation p.Q615* 0.33 TCGA-IB-7651-01 2 145161567 145161567 A G ZEB2 Silent p.F241F 0.10 TCGA-IB-7651-01 2 145187540 145187540 T C ZEB2 Missense_Mutation p.K43E 0.28 deleterious(0.01) benign(0.108) TCGA-IB-7651-01 2 145274968 145274968 G A ZEB2 5'UTR 0.28 TCGA-IB-7651-01 2 1457548 1457548 C T TPO Nonsense_Mutation p.R189* 0.24 TCGA-IB-7651-01 2 1459850 1459850 C T TPO Silent p.V205V 0.27 TCGA-IB-7651-01 2 14774144 14774144 G T FAM84A Missense_Mutation p.S14I 0.13 deleterious(0.01) probably_damaging(0.986) TCGA-IB-7651-01 2 14774452 14774452 C A FAM84A Missense_Mutation p.P117T 0.20 tolerated(0.08) probably_damaging(0.998) TCGA-IB-7651-01 2 14774697 14774697 C T FAM84A Silent p.G198G 0.30 TCGA-IB-7651-01 2 14774877 14774877 G A FAM84A Silent p.R258R 0.30 TCGA-IB-7651-01 2 148705663 148705663 A C ORC4 Missense_Mutation p.F240C 0.14 deleterious(0.02) possibly_damaging(0.882) TCGA-IB-7651-01 2 149243447 149243447 G A MBD5 Silent p.A994A 0.24 TCGA-IB-7651-01 2 149247325 149247325 C T MBD5 Missense_Mutation p.A1142V 0.28 deleterious_low_confidence(0) unknown(0) TCGA-IB-7651-01 2 149248116 149248116 G T MBD5 Nonsense_Mutation p.E1406* 0.08 TCGA-IB-7651-01 2 149248121 149248121 C T MBD5 Silent p.D1407D 0.29 TCGA-IB-7651-01 2 149519453 149519453 A G EPC2 Missense_Mutation p.T257A 0.19 deleterious(0.04) benign(0.013) TCGA-IB-7651-01 2 149528914 149528914 G A EPC2 Missense_Mutation p.A560T 0.18 tolerated(0.38) benign(0.001) TCGA-IB-7651-01 2 149528924 149528924 C T EPC2 Missense_Mutation p.A563V 0.14 tolerated(0.2) benign(0.053) TCGA-IB-7651-01 2 1497599 1497599 C T TPO Silent p.C598C 0.06 TCGA-IB-7651-01 2 149866864 149866864 C T KIF5C Silent p.I922I 0.29 TCGA-IB-7651-01 2 151326722 151326722 C T RND3 Missense_Mutation p.A172T 0.26 tolerated(0.47) probably_damaging(0.993) TCGA-IB-7651-01 2 152311610 152311610 C A RIF1 Missense_Mutation p.S849Y 0.18 deleterious(0) possibly_damaging(0.796) TCGA-IB-7651-01 2 152320230 152320230 T C RIF1 Missense_Mutation p.V1399A 0.26 tolerated(0.33) benign(0.103) TCGA-IB-7651-01 2 152322075 152322075 C T RIF1 Missense_Mutation p.T2014M 0.15 tolerated_low_confidence(1) benign(0.002) TCGA-IB-7651-01 2 152346952 152346952 G A NEB Missense_Mutation p.H8411Y 0.20 benign(0.207) TCGA-IB-7651-01 2 152352790 152352790 C T NEB Silent p.S8162S 0.23 TCGA-IB-7651-01 2 152364595 152364595 G A NEB Missense_Mutation p.S7792F 0.20 possibly_damaging(0.766) TCGA-IB-7651-01 2 152419185 152419185 C T NEB Silent p.T6277T 0.15 TCGA-IB-7651-01 2 152466579 152466579 C T NEB Missense_Mutation p.S4025N 0.20 benign(0.073) TCGA-IB-7651-01 2 152468847 152468847 G A NEB Silent p.G3886G 0.07 TCGA-IB-7651-01 2 152471039 152471039 C A NEB Missense_Mutation p.K3784N 0.28 benign(0.345) TCGA-IB-7651-01 2 152506868 152506868 C T NEB Nonsense_Mutation p.W2418* 0.15 TCGA-IB-7651-01 2 152512680 152512680 C T NEB Missense_Mutation p.R2161H 0.15 benign(0.005) TCGA-IB-7651-01 2 152512810 152512810 C T NEB Missense_Mutation p.D2118N 0.27 benign(0.09) TCGA-IB-7651-01 2 152520341 152520341 T G NEB Missense_Mutation p.K1828N 0.18 possibly_damaging(0.883) TCGA-IB-7651-01 2 152527556 152527556 T C NEB Missense_Mutation p.N1496S 0.27 probably_damaging(0.997) TCGA-IB-7651-01 2 152528985 152528985 G A NEB Silent p.V1399V 0.24 TCGA-IB-7651-01 2 152537333 152537333 G A NEB Missense_Mutation p.R985C 0.24 probably_damaging(0.999) TCGA-IB-7651-01 2 152584236 152584236 T C NEB Missense_Mutation p.H88R 0.15 probably_damaging(0.996) TCGA-IB-7651-01 2 152992061 152992061 T G STAM2 Missense_Mutation p.N254T 0.27 deleterious(0) possibly_damaging(0.611) TCGA-IB-7651-01 2 15307260 15307260 G A NBAS Missense_Mutation p.A2343V 0.24 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 2 15330414 15330414 A C NBAS Silent p.A2182A 0.15 TCGA-IB-7651-01 2 153484903 153484903 C T FMNL2 Silent p.Y752Y 0.15 TCGA-IB-7651-01 2 153575030 153575030 G A ARL6IP6 5'UTR 0.30 TCGA-IB-7651-01 2 15493765 15493765 C T NBAS Missense_Mutation p.R1334H 0.29 deleterious(0) possibly_damaging(0.906) TCGA-IB-7651-01 2 154996996 154996996 C T GALNT13 Silent p.L97L 0.14 TCGA-IB-7651-01 2 155102495 155102495 G A GALNT13 Missense_Mutation p.R286K 0.21 tolerated(0.17) benign(0.042) TCGA-IB-7651-01 2 15534373 15534373 A G NBAS Silent p.L1079L 0.18 TCGA-IB-7651-01 2 15555769 15555769 C T NBAS Silent p.S946S 0.26 TCGA-IB-7651-01 2 15601859 15601859 C T NBAS Silent p.K718K 0.17 TCGA-IB-7651-01 2 157182425 157182425 T C NR4A2 Missense_Mutation p.N543S 0.26 tolerated(0.74) benign(0.005) TCGA-IB-7651-01 2 157184947 157184947 C A NR4A2 Missense_Mutation p.Q321H 0.17 deleterious(0) probably_damaging(0.953) TCGA-IB-7651-01 2 158115418 158115418 G A GALNT5 Missense_Mutation p.S275N 0.07 tolerated(1) benign(0.001) TCGA-IB-7651-01 2 158115529 158115529 G A GALNT5 Missense_Mutation p.G312E 0.07 tolerated(0.41) benign(0.017) TCGA-IB-7651-01 2 158399284 158399284 G A ACVR1C Missense_Mutation p.A345V 0.20 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 2 158958634 158958634 T C UPP2 Missense_Mutation p.V77A 0.17 tolerated(0.64) benign(0.002) TCGA-IB-7651-01 2 159535158 159535158 C T PKP4 Missense_Mutation p.R1108W 0.24 deleterious(0.01) benign(0.284) TCGA-IB-7651-01 2 159537009 159537009 G A PKP4 Silent p.L1133L 0.25 TCGA-IB-7651-01 2 160019849 160019849 G A TANC1 Nonsense_Mutation p.W246* 0.27 TCGA-IB-7651-01 2 160020017 160020017 C A TANC1 Silent p.G302G 0.18 TCGA-IB-7651-01 2 160031536 160031536 G A TANC1 Missense_Mutation p.A526T 0.26 deleterious(0) probably_damaging(0.948) TCGA-IB-7651-01 2 160043449 160043449 C A TANC1 Missense_Mutation p.L886I 0.23 deleterious(0) possibly_damaging(0.777) TCGA-IB-7651-01 2 160074011 160074011 T G TANC1 Missense_Mutation p.L1083R 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 160084456 160084456 C T TANC1 Nonsense_Mutation p.R1344* 0.25 TCGA-IB-7651-01 2 160086401 160086401 C T TANC1 Silent p.I1488I 0.27 TCGA-IB-7651-01 2 160112844 160112844 C T WDSUB1 Nonsense_Mutation p.W332* 0.22 TCGA-IB-7651-01 2 160243016 160243016 A C BAZ2B Missense_Mutation p.L1107V 0.24 probably_damaging(0.999) TCGA-IB-7651-01 2 160287620 160287620 C A BAZ2B Missense_Mutation p.D650Y 0.25 possibly_damaging(0.861) TCGA-IB-7651-01 2 160289445 160289445 C T BAZ2B Missense_Mutation p.V575I 0.26 benign(0.097) TCGA-IB-7651-01 2 160295624 160295624 C A BAZ2B Missense_Mutation p.D266Y 0.16 possibly_damaging(0.861) TCGA-IB-7651-01 2 160636639 160636639 T C LY75-CD302 Missense_Mutation p.T1757A 0.14 tolerated(0.6) benign(0.021) TCGA-IB-7651-01 2 160676380 160676380 C T LY75-CD302 Missense_Mutation p.R1337K 0.20 tolerated(0.18) possibly_damaging(0.87) TCGA-IB-7651-01 2 160741799 160741799 G A LY75-CD302 Missense_Mutation p.P307S 0.23 tolerated(0.09) probably_damaging(0.986) TCGA-IB-7651-01 2 160825793 160825793 C T PLA2R1 Missense_Mutation p.R913K 0.07 tolerated(0.17) benign(0.189) TCGA-IB-7651-01 2 16085728 16085728 C T MYCN Missense_Mutation p.R302C 0.16 deleterious(0.02) possibly_damaging(0.761) TCGA-IB-7651-01 2 161223761 161223761 T C RBMS1 Missense_Mutation p.T73A 0.25 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 162273024 162273024 C T TBR1 Missense_Mutation p.H35Y 0.17 tolerated_low_confidence(0.16) possibly_damaging(0.775) TCGA-IB-7651-01 2 162273383 162273383 C T TBR1 Silent p.N154N 0.04 TCGA-IB-7651-01 2 162274404 162274404 C T TBR1 Intron 0.15 TCGA-IB-7651-01 2 162833294 162833294 A G SLC4A10 Missense_Mutation p.I1084M 0.24 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 2 162833344 162833344 C T SLC4A10 Missense_Mutation p.A1101V 0.08 tolerated(0.25) benign(0.007) TCGA-IB-7651-01 2 162834231 162834231 G A SLC4A10 Splice_Site p.X1115_splice 0.14 TCGA-IB-7651-01 2 162862277 162862277 T G DPP4 Missense_Mutation p.E677A 0.18 tolerated(0.42) benign(0.137) TCGA-IB-7651-01 2 162865071 162865071 C T DPP4 Splice_Site p.X663_splice 0.23 TCGA-IB-7651-01 2 163003925 163003925 C T GCG Silent p.K64K 0.26 TCGA-IB-7651-01 2 163082066 163082066 G A FAP Missense_Mutation p.S71F 0.23 deleterious(0.01) possibly_damaging(0.845) TCGA-IB-7651-01 2 163124694 163124694 T C IFIH1 Missense_Mutation p.T904A 0.20 tolerated(0.17) benign(0.065) TCGA-IB-7651-01 2 163130398 163130398 G A IFIH1 Silent p.I787I 0.16 TCGA-IB-7651-01 2 163134176 163134176 C T IFIH1 Missense_Mutation p.R598H 0.17 deleterious(0.04) benign(0.339) TCGA-IB-7651-01 2 163174679 163174679 G A IFIH1 Nonsense_Mutation p.Q47* 0.25 TCGA-IB-7651-01 2 163256740 163256740 G T KCNH7 Missense_Mutation p.S789Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 2 163279902 163279902 G A KCNH7 Missense_Mutation p.L700F 0.26 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 2 163374395 163374395 C T KCNH7 Missense_Mutation p.R246Q 0.25 tolerated(0.06) benign(0.004) TCGA-IB-7651-01 2 163693155 163693155 C T KCNH7 Missense_Mutation p.D67N 0.26 deleterious(0.05) possibly_damaging(0.511) TCGA-IB-7651-01 2 163695093 163695093 G A KCNH7 5'UTR 0.21 TCGA-IB-7651-01 2 164466940 164466940 G A FIGN Missense_Mutation p.L468F 0.16 deleterious(0.02) probably_damaging(0.994) TCGA-IB-7651-01 2 164468186 164468186 G A FIGN Silent p.Y52Y 0.19 TCGA-IB-7651-01 2 1651965 1651965 T G PXDN Missense_Mutation p.E1196A 0.14 tolerated(0.17) benign(0.014) TCGA-IB-7651-01 2 1652088 1652088 G A PXDN Missense_Mutation p.A1155V 0.07 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 2 1653036 1653036 G A PXDN Missense_Mutation p.A839V 0.26 deleterious(0.02) benign(0.093) TCGA-IB-7651-01 2 165353553 165353553 A G GRB14 Silent p.A449A 0.05 TCGA-IB-7651-01 2 165404219 165404219 A G GRB14 Silent p.I144I 0.16 TCGA-IB-7651-01 2 165551408 165551408 C T COBLL1 Missense_Mutation p.D870N 0.15 tolerated(0.08) possibly_damaging(0.871) TCGA-IB-7651-01 2 166019220 166019220 G A SCN3A Silent p.G271G 0.26 TCGA-IB-7651-01 2 166231448 166231448 G T SCN2A Missense_Mutation p.G1409V 0.20 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 2 166243340 166243340 G A SCN2A Missense_Mutation p.V1546I 0.28 tolerated(0.39) benign(0.071) TCGA-IB-7651-01 2 166535367 166535367 C A CSRNP3 Missense_Mutation p.L288M 0.30 tolerated(0.24) possibly_damaging(0.742) TCGA-IB-7651-01 2 166740357 166740357 C A TTC21B Missense_Mutation p.A1211S 0.20 tolerated(0.25) benign(0.027) TCGA-IB-7651-01 2 1667419 1667419 C A PXDN Missense_Mutation p.G509C 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 166785764 166785764 G T TTC21B Missense_Mutation p.L423M 0.22 deleterious(0.04) possibly_damaging(0.522) TCGA-IB-7651-01 2 166805950 166805950 A G TTC21B Silent p.C72C 0.07 TCGA-IB-7651-01 2 166848892 166848892 G T SCN1A Silent p.S1631S 0.14 TCGA-IB-7651-01 2 166859067 166859067 A G SCN1A Missense_Mutation p.I1400T 0.26 tolerated(0.47) benign(0.102) TCGA-IB-7651-01 2 166900413 166900413 G A SCN1A Silent p.S603S 0.18 TCGA-IB-7651-01 2 166908316 166908316 C A SCN1A Nonsense_Mutation p.E293* 0.13 TCGA-IB-7651-01 2 167085266 167085266 G A SCN9A Nonsense_Mutation p.R1370* 0.17 TCGA-IB-7651-01 2 167138288 167138288 G A SCN9A Missense_Mutation p.R658C 0.07 tolerated(0.05) benign(0.026) TCGA-IB-7651-01 2 167163471 167163471 T C SCN9A Silent p.V124V 0.30 TCGA-IB-7651-01 2 167168312 167168312 G T SCN9A 5'UTR 0.31 TCGA-IB-7651-01 2 167262289 167262289 G A SCN7A Missense_Mutation p.T1617M 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 2 167262858 167262858 A C SCN7A Silent p.L1427L 0.15 TCGA-IB-7651-01 2 167288898 167288898 C T SCN7A Missense_Mutation p.G841E 0.20 tolerated(0.34) benign(0.358) TCGA-IB-7651-01 2 167328870 167328870 C T SCN7A Missense_Mutation p.G177S 0.12 deleterious(0.01) probably_damaging(0.919) TCGA-IB-7651-01 2 1677465 1677465 G A PXDN Missense_Mutation p.A323V 0.24 tolerated(0.71) benign(0.252) TCGA-IB-7651-01 2 167760305 167760305 C T XIRP2 Missense_Mutation p.R105C 0.17 possibly_damaging(0.77) TCGA-IB-7651-01 2 1680761 1680761 G A PXDN Silent p.T262T 0.14 TCGA-IB-7651-01 2 168100760 168100760 A C XIRP2 Missense_Mutation p.E953A 0.14 probably_damaging(0.999) TCGA-IB-7651-01 2 168102034 168102034 G T XIRP2 Missense_Mutation p.D1378Y 0.16 probably_damaging(0.99) TCGA-IB-7651-01 2 168102560 168102560 A C XIRP2 Missense_Mutation p.K1553T 0.23 probably_damaging(0.98) TCGA-IB-7651-01 2 168103174 168103174 C A XIRP2 Missense_Mutation p.L1758M 0.26 probably_damaging(0.997) TCGA-IB-7651-01 2 168103993 168103993 G T XIRP2 Missense_Mutation p.D2031Y 0.24 probably_damaging(0.971) TCGA-IB-7651-01 2 168104995 168104995 C T XIRP2 Missense_Mutation p.P2365S 0.28 possibly_damaging(0.901) TCGA-IB-7651-01 2 168106134 168106135 - A XIRP2 Frame_Shift_Ins p.Q2747Tfs*9 0.23 TCGA-IB-7651-01 2 168107754 168107754 G A XIRP2 Silent p.V3284V 0.27 TCGA-IB-7651-01 2 168108246 168108246 C T XIRP2 Silent p.G3448G 0.23 TCGA-IB-7651-01 2 168108257 168108257 A C XIRP2 Missense_Mutation p.K3452T 0.20 probably_damaging(0.964) TCGA-IB-7651-01 2 1687462 1687462 C A PXDN Missense_Mutation p.G176W 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 169727887 169727887 G T SPC25 3'UTR 0.30 TCGA-IB-7651-01 2 169730185 169730185 A C SPC25 Missense_Mutation p.L154V 0.24 deleterious(0) probably_damaging(0.975) TCGA-IB-7651-01 2 169757900 169757900 G A G6PC2 Missense_Mutation p.R20Q 0.23 tolerated(1) benign(0.01) TCGA-IB-7651-01 2 169792891 169792891 A G ABCB11 Missense_Mutation p.V888A 0.24 tolerated(0.29) benign(0.019) TCGA-IB-7651-01 2 169869852 169869852 A G ABCB11 Missense_Mutation p.C107R 0.24 deleterious(0.02) probably_damaging(0.995) TCGA-IB-7651-01 2 170027155 170027155 G A LRP2 Silent p.S3762S 0.27 TCGA-IB-7651-01 2 170349386 170349386 C T BBS5 Missense_Mutation p.A130V 0.17 deleterious(0.01) probably_damaging(0.983) TCGA-IB-7651-01 2 170359670 170359670 T G BBS5 Silent p.G294G 0.09 TCGA-IB-7651-01 2 170493717 170493717 A G PPIG Missense_Mutation p.K650R 0.18 deleterious_low_confidence(0.02) unknown(0) TCGA-IB-7651-01 2 170493763 170493763 C T PPIG Silent p.Y665Y 0.28 TCGA-IB-7651-01 2 170493870 170493870 T C PPIG Missense_Mutation p.L701S 0.15 tolerated_low_confidence(0.8) unknown(0) TCGA-IB-7651-01 2 170502626 170502626 C T CCDC173 Missense_Mutation p.A462T 0.23 tolerated(0.17) benign(0.026) TCGA-IB-7651-01 2 170505813 170505813 G T CCDC173 Missense_Mutation p.A399D 0.22 tolerated(0.23) benign(0.032) TCGA-IB-7651-01 2 170606212 170606212 T A KLHL23 Silent p.S549S 0.06 TCGA-IB-7651-01 2 170815035 170815035 T G UBR3 Silent p.V1211V 0.15 TCGA-IB-7651-01 2 170917646 170917646 C T UBR3 Silent p.L1615L 0.12 TCGA-IB-7651-01 2 171070913 171070913 G A MYO3B Missense_Mutation p.E116K 0.16 deleterious(0) benign(0.392) TCGA-IB-7651-01 2 171225744 171225744 G T MYO3B Missense_Mutation p.K276N 0.25 deleterious(0.01) probably_damaging(0.942) TCGA-IB-7651-01 2 171243770 171243770 G T MYO3B Missense_Mutation p.R510I 0.17 deleterious(0.01) benign(0.195) TCGA-IB-7651-01 2 171675171 171675171 C A GAD1 Missense_Mutation p.L24M 0.23 tolerated_low_confidence(0.13) probably_damaging(0.996) TCGA-IB-7651-01 2 171678658 171678658 C T GAD1 Silent p.C48C 0.13 TCGA-IB-7651-01 2 171686050 171686050 C T GAD1 Nonsense_Mutation p.Q71* 0.24 TCGA-IB-7651-01 2 171702066 171702066 T C GAD1 Missense_Mutation p.F268L 0.16 deleterious(0.03) possibly_damaging(0.514) TCGA-IB-7651-01 2 171804913 171804913 T G GORASP2 Missense_Mutation p.F39L 0.13 deleterious(0) benign(0.003) TCGA-IB-7651-01 2 172411148 172411148 G A CYBRD1 Nonsense_Mutation p.W224* 0.26 TCGA-IB-7651-01 2 172648089 172648089 G A SLC25A12 Missense_Mutation p.A486V 0.27 deleterious(0.02) probably_damaging(0.976) TCGA-IB-7651-01 2 172944904 172944904 C T METAP1D Missense_Mutation p.A300V 0.17 deleterious(0) benign(0.026) TCGA-IB-7651-01 2 173368845 173368845 C T ITGA6 Silent p.Y1047Y 0.26 TCGA-IB-7651-01 2 173457694 173457694 G A PDK1 Missense_Mutation p.R363H 0.25 deleterious(0.02) benign(0.022) TCGA-IB-7651-01 2 173848280 173848280 T G RAPGEF4 Missense_Mutation p.I354S 0.16 deleterious(0) benign(0.367) TCGA-IB-7651-01 2 173891399 173891399 T C RAPGEF4 Missense_Mutation p.W785R 0.19 deleterious(0.02) probably_damaging(0.995) TCGA-IB-7651-01 2 173916387 173916387 T C RAPGEF4 Silent p.A976A 0.18 TCGA-IB-7651-01 2 175300962 175300962 C T GPR155 Missense_Mutation p.R832K 0.17 tolerated(0.15) possibly_damaging(0.808) TCGA-IB-7651-01 2 175439979 175439979 A G WIPF1 Missense_Mutation p.F104S 0.28 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 2 175614714 175614714 C T CHRNA1 Missense_Mutation p.R346H 0.14 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 175624353 175624353 C T CHRNA1 Missense_Mutation p.V18I 0.15 tolerated(0.23) benign(0.003) TCGA-IB-7651-01 2 176042998 176042998 A G ATP5G3 3'UTR 0.15 TCGA-IB-7651-01 2 176043125 176043125 G T ATP5G3 Missense_Mutation p.P107H 0.09 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 2 176046212 176046212 C A ATP5G3 Intron 0.21 TCGA-IB-7651-01 2 176802174 176802174 G T KIAA1715 Missense_Mutation p.P318T 0.15 deleterious(0.03) probably_damaging(0.974) TCGA-IB-7651-01 2 176812408 176812408 C T KIAA1715 Missense_Mutation p.R169Q 0.08 deleterious(0.04) possibly_damaging(0.691) TCGA-IB-7651-01 2 176844565 176844565 A C KIAA1715 Missense_Mutation p.F97V 0.15 deleterious(0.03) benign(0.05) TCGA-IB-7651-01 2 176948622 176948622 G A EVX2 5'UTR 0.33 TCGA-IB-7651-01 2 176959324 176959324 T G HOXD13 Missense_Mutation p.F300V 0.07 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 2 176964670 176964670 C T HOXD12 Silent p.G47G 0.32 TCGA-IB-7651-01 2 176964901 176964901 C T HOXD12 Silent p.S124S 0.20 TCGA-IB-7651-01 2 176965333 176965333 G A HOXD12 Missense_Mutation p.E220K 0.17 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 2 17697531 17697531 C T RAD51AP2 Missense_Mutation p.V718M 0.23 tolerated(1) benign(0.002) TCGA-IB-7651-01 2 17698100 17698100 C T RAD51AP2 Missense_Mutation p.S528N 0.15 tolerated(0.5) benign(0.013) TCGA-IB-7651-01 2 17698488 17698488 C T RAD51AP2 Missense_Mutation p.V399I 0.15 tolerated(1) benign(0.001) TCGA-IB-7651-01 2 176987568 176987568 G A HOXD9 Silent p.S24S 0.16 TCGA-IB-7651-01 2 177016490 177016490 C T HOXD4 Silent p.G43G 0.18 TCGA-IB-7651-01 2 17773500 17773500 G A VSNL1 Silent p.V53V 0.08 TCGA-IB-7651-01 2 178415760 178415760 G A TTC30B Silent p.L578L 0.25 TCGA-IB-7651-01 2 178417503 178417503 C T TTC30B 5'UTR 0.21 TCGA-IB-7651-01 2 178481408 178481409 - A TTC30A 3'UTR 0.16 TCGA-IB-7651-01 2 178482197 178482197 C A TTC30A Missense_Mutation p.K411N 0.21 tolerated(0.13) benign(0.355) TCGA-IB-7651-01 2 178483364 178483364 G T TTC30A Silent p.I22I 0.12 TCGA-IB-7651-01 2 178592804 178592804 G A PDE11A Missense_Mutation p.R629W 0.32 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 2 178977542 178977542 G A RBM45 Missense_Mutation p.C90Y 0.06 tolerated(0.1) possibly_damaging(0.505) TCGA-IB-7651-01 2 179192982 179192982 G A OSBPL6 Splice_Site p.X66_splice 0.15 TCGA-IB-7651-01 2 179248841 179248841 G T OSBPL6 Missense_Mutation p.V676F 0.16 deleterious(0) benign(0.415) TCGA-IB-7651-01 2 179253867 179253867 T C OSBPL6 Missense_Mutation p.L788P 0.30 deleterious(0.03) possibly_damaging(0.888) TCGA-IB-7651-01 2 179318256 179318256 G A DFNB59 Silent p.K40K 0.25 TCGA-IB-7651-01 2 179393838 179393838 G T TTN Missense_Mutation p.S35547Y 0.24 TCGA-IB-7651-01 2 179396193 179396193 C A TTN Missense_Mutation p.R35050I 0.24 TCGA-IB-7651-01 2 179396844 179396844 G A TTN Missense_Mutation p.A34833V 0.11 TCGA-IB-7651-01 2 179401007 179401007 A G TTN Silent p.S33489S 0.25 TCGA-IB-7651-01 2 179403534 179403534 G A TTN Missense_Mutation p.L33008F 0.28 TCGA-IB-7651-01 2 179404084 179404084 A C TTN Intron 0.15 TCGA-IB-7651-01 2 179407472 179407472 G T TTN Missense_Mutation p.T32370N 0.17 TCGA-IB-7651-01 2 179411070 179411070 G T TTN Missense_Mutation p.S31663Y 0.25 TCGA-IB-7651-01 2 179412905 179412905 G A TTN Missense_Mutation p.L31150F 0.25 TCGA-IB-7651-01 2 179417271 179417271 G A TTN Missense_Mutation p.P30119L 0.16 TCGA-IB-7651-01 2 179418655 179418655 G A TTN Missense_Mutation p.A29728V 0.18 TCGA-IB-7651-01 2 179419371 179419371 T C TTN Missense_Mutation p.H29568R 0.31 TCGA-IB-7651-01 2 179419672 179419672 C T TTN Missense_Mutation p.R29505H 0.21 TCGA-IB-7651-01 2 179422791 179422791 G A TTN Missense_Mutation p.A29097V 0.25 TCGA-IB-7651-01 2 179425926 179425926 G A TTN Silent p.Y28311Y 0.19 TCGA-IB-7651-01 2 179430078 179430078 G A TTN Silent p.N26927N 0.30 TCGA-IB-7651-01 2 179430453 179430453 C A TTN Missense_Mutation p.E26802D 0.29 TCGA-IB-7651-01 2 179433050 179433050 C T TTN Missense_Mutation p.V25937I 0.23 TCGA-IB-7651-01 2 179433683 179433683 C T TTN Missense_Mutation p.G25726S 0.14 TCGA-IB-7651-01 2 179433938 179433938 G A TTN Missense_Mutation p.R25641C 0.25 TCGA-IB-7651-01 2 179434671 179434671 G T TTN Nonsense_Mutation p.Y25396* 0.15 TCGA-IB-7651-01 2 179442498 179442498 C T TTN Silent p.S22885S 0.30 TCGA-IB-7651-01 2 179444459 179444459 C T TTN Missense_Mutation p.D22489N 0.11 TCGA-IB-7651-01 2 179446443 179446443 G A TTN Silent p.G22184G 0.20 TCGA-IB-7651-01 2 179449333 179449333 G A TTN Intron 0.16 TCGA-IB-7651-01 2 179454805 179454805 G T TTN Silent p.I20549I 0.09 TCGA-IB-7651-01 2 179454840 179454840 C A TTN Nonsense_Mutation p.E20538* 0.31 TCGA-IB-7651-01 2 179456819 179456819 C T TTN Missense_Mutation p.A19938T 0.16 TCGA-IB-7651-01 2 179457732 179457732 C T TTN Missense_Mutation p.R19705H 0.28 TCGA-IB-7651-01 2 179458929 179458929 C T TTN Silent p.T19397T 0.18 TCGA-IB-7651-01 2 179462481 179462481 T A TTN Missense_Mutation p.I19110F 0.17 TCGA-IB-7651-01 2 179462653 179462653 C T TTN Missense_Mutation p.E19082K 0.17 TCGA-IB-7651-01 2 179463744 179463744 C T TTN Missense_Mutation p.R18898H 0.10 TCGA-IB-7651-01 2 179465822 179465822 C T TTN Silent p.P18603P 0.17 TCGA-IB-7651-01 2 179466617 179466617 C T TTN Missense_Mutation p.D18432N 0.14 TCGA-IB-7651-01 2 179469867 179469867 C T TTN Missense_Mutation p.A18013T 0.14 TCGA-IB-7651-01 2 179474270 179474270 C A TTN Missense_Mutation p.S17256I 0.16 TCGA-IB-7651-01 2 179474468 179474468 C T TTN Missense_Mutation p.A17228T 0.25 TCGA-IB-7651-01 2 179474553 179474553 T C TTN Silent p.E17199E 0.09 TCGA-IB-7651-01 2 179478614 179478614 C T TTN Missense_Mutation p.A16466T 0.25 TCGA-IB-7651-01 2 179481272 179481272 A C TTN Missense_Mutation p.D16082E 0.24 TCGA-IB-7651-01 2 179481716 179481716 G A TTN Missense_Mutation p.A15967V 0.16 TCGA-IB-7651-01 2 179485295 179485295 G A TTN Missense_Mutation p.S15318F 0.28 TCGA-IB-7651-01 2 179497134 179497134 C A TTN Missense_Mutation p.R14496L 0.26 TCGA-IB-7651-01 2 179500957 179500957 G A TTN Missense_Mutation p.R13781C 0.24 TCGA-IB-7651-01 2 179507020 179507020 C T TTN Missense_Mutation p.R13501H 0.11 TCGA-IB-7651-01 2 179516866 179516866 C T TTN Silent p.V13084V 0.21 TCGA-IB-7651-01 2 17954522 17954522 G A GEN1 Missense_Mutation p.V343M 0.12 tolerated(0.08) benign(0.091) TCGA-IB-7651-01 2 179547466 179547466 G A TTN Missense_Mutation p.R11018W 0.22 TCGA-IB-7651-01 2 179550287 179550287 G A TTN Silent p.L10784L 0.21 TCGA-IB-7651-01 2 179568946 179568946 G A TTN Nonsense_Mutation p.R10051* 0.27 TCGA-IB-7651-01 2 179569378 179569378 G T TTN Missense_Mutation p.L9941M 0.07 TCGA-IB-7651-01 2 179575601 179575601 G T TTN Missense_Mutation p.A9408D 0.14 TCGA-IB-7651-01 2 179577471 179577471 C T TTN Missense_Mutation p.S9094N 0.15 TCGA-IB-7651-01 2 179584922 179584922 G A TTN Missense_Mutation p.A7816V 0.26 TCGA-IB-7651-01 2 179589098 179589098 T C TTN Missense_Mutation p.I7002V 0.17 TCGA-IB-7651-01 2 17959282 17959282 C T GEN1 Nonsense_Mutation p.R406* 0.20 TCGA-IB-7651-01 2 179593619 179593619 T G TTN Missense_Mutation p.Q6382H 0.29 TCGA-IB-7651-01 2 179598068 179598068 G T TTN Missense_Mutation p.L5318I 0.15 TCGA-IB-7651-01 2 179598373 179598373 C T TTN Missense_Mutation p.S5248N 0.26 TCGA-IB-7651-01 2 179598615 179598615 A G TTN Silent p.P5167P 0.27 TCGA-IB-7651-01 2 179606156 179606156 G T TTN Missense_Mutation p.P3935H 0.15 TCGA-IB-7651-01 2 179610205 179610205 C T TTN Intron 0.31 TCGA-IB-7651-01 2 179610329 179610329 C T TTN Intron 0.06 TCGA-IB-7651-01 2 179612429 179612429 C A TTN Intron 0.26 TCGA-IB-7651-01 2 179612581 179612581 G A TTN Intron 0.28 TCGA-IB-7651-01 2 179613691 179613691 C T TTN Intron 0.17 TCGA-IB-7651-01 2 179615383 179615383 C T TTN Intron 0.16 TCGA-IB-7651-01 2 179616305 179616305 C A TTN Intron 0.18 TCGA-IB-7651-01 2 179616447 179616447 A G TTN Intron 0.18 TCGA-IB-7651-01 2 179621175 179621175 C T TTN Silent p.T3676T 0.23 TCGA-IB-7651-01 2 179631200 179631200 C T TTN Missense_Mutation p.R3204Q 0.15 TCGA-IB-7651-01 2 179638990 179638990 C A TTN Missense_Mutation p.G2334V 0.23 TCGA-IB-7651-01 2 179640548 179640548 C T TTN Missense_Mutation p.A2015T 0.16 TCGA-IB-7651-01 2 179647028 179647028 C A TTN Silent p.G1097G 0.17 TCGA-IB-7651-01 2 179647624 179647624 G T TTN Silent p.R1003R 0.06 TCGA-IB-7651-01 2 179654143 179654143 T C TTN Missense_Mutation p.R674G 0.15 TCGA-IB-7651-01 2 179701514 179701514 G A CCDC141 Intron 0.28 TCGA-IB-7651-01 2 179701780 179701780 C T CCDC141 Missense_Mutation p.R1389Q 0.24 tolerated(0.65) benign(0.002) TCGA-IB-7651-01 2 179701839 179701839 G A CCDC141 Silent p.F1369F 0.26 TCGA-IB-7651-01 2 179714776 179714776 C T CCDC141 Silent p.K1119K 0.15 TCGA-IB-7651-01 2 179720079 179720079 C T CCDC141 Missense_Mutation p.E1019K 0.11 tolerated(0.1) possibly_damaging(0.868) TCGA-IB-7651-01 2 179730620 179730620 C A CCDC141 Missense_Mutation p.K866N 0.17 deleterious(0.01) probably_damaging(0.945) TCGA-IB-7651-01 2 179736940 179736940 G A CCDC141 Missense_Mutation p.R667W 0.16 tolerated(0.53) benign(0.007) TCGA-IB-7651-01 2 17998000 17998000 G T MSGN1 Missense_Mutation p.G72V 0.16 deleterious(0.03) benign(0.05) TCGA-IB-7651-01 2 17998310 17998310 C T MSGN1 Silent p.I175I 0.05 TCGA-IB-7651-01 2 17998323 17998323 G T MSGN1 Missense_Mutation p.D180Y 0.15 deleterious(0) possibly_damaging(0.898) TCGA-IB-7651-01 2 180307983 180307983 C T ZNF385B Silent p.P470P 0.25 TCGA-IB-7651-01 2 180308082 180308082 G T ZNF385B Silent p.P437P 0.13 TCGA-IB-7651-01 2 180310425 180310425 C T ZNF385B Missense_Mutation p.R316H 0.14 tolerated(0.14) probably_damaging(0.999) TCGA-IB-7651-01 2 180817221 180817221 T C CWC22 Silent p.K598K 0.12 TCGA-IB-7651-01 2 180837941 180837941 C T CWC22 Silent p.A261A 0.16 TCGA-IB-7651-01 2 180842944 180842944 A G CWC22 Missense_Mutation p.L185P 0.24 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 2 18112762 18112762 C T KCNS3 Nonsense_Mutation p.R163* 0.09 TCGA-IB-7651-01 2 18113720 18113720 C T KCNS3 Missense_Mutation p.T482I 0.28 deleterious(0.02) benign(0) TCGA-IB-7651-01 2 181846774 181846774 C T UBE2E3 Missense_Mutation p.S2F 0.20 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-IB-7651-01 2 182413296 182413296 T G CERKL Missense_Mutation p.N396T 0.15 tolerated(0.28) benign(0.004) TCGA-IB-7651-01 2 182542881 182542881 C T NEUROD1 Missense_Mutation p.S236N 0.16 tolerated(0.31) benign(0.241) TCGA-IB-7651-01 2 182543157 182543157 C T NEUROD1 Missense_Mutation p.R144H 0.10 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 182781011 182781011 G T SSFA2 Missense_Mutation p.A882S 0.23 tolerated(0.54) benign(0.023) TCGA-IB-7651-01 2 182781142 182781142 G T SSFA2 Missense_Mutation p.Q925H 0.17 tolerated(0.06) probably_damaging(0.967) TCGA-IB-7651-01 2 182783536 182783536 C T SSFA2 Nonsense_Mutation p.Q974* 0.16 TCGA-IB-7651-01 2 183387083 183387083 C T PDE1A Silent p.E7E 0.16 TCGA-IB-7651-01 2 183582756 183582756 C A DNAJC10 5'UTR 0.16 TCGA-IB-7651-01 2 183699691 183699691 C T FRZB Missense_Mutation p.R288H 0.24 tolerated(0.05) benign(0.072) TCGA-IB-7651-01 2 183791578 183791578 C A NCKAP1 Missense_Mutation p.R1085I 0.25 deleterious(0) possibly_damaging(0.599) TCGA-IB-7651-01 2 183793529 183793529 A G NCKAP1 Missense_Mutation p.Y1024H 0.22 deleterious(0) probably_damaging(0.921) TCGA-IB-7651-01 2 183800055 183800055 G A NCKAP1 Missense_Mutation p.S921F 0.22 deleterious(0.02) probably_damaging(0.956) TCGA-IB-7651-01 2 183850942 183850942 T C NCKAP1 Missense_Mutation p.I327V 0.18 tolerated(1) benign(0.003) TCGA-IB-7651-01 2 185802746 185802746 T G ZNF804A Missense_Mutation p.L875V 0.08 tolerated(0.67) benign(0) TCGA-IB-7651-01 2 185803264 185803264 A G ZNF804A Silent p.V1047V 0.25 TCGA-IB-7651-01 2 186671080 186671080 A G FSIP2 Missense_Mutation p.N5772D 0.19 probably_damaging(0.997) TCGA-IB-7651-01 2 186671708 186671708 C A FSIP2 Missense_Mutation p.P5981H 0.16 benign(0.004) TCGA-IB-7651-01 2 186671858 186671858 G A FSIP2 Missense_Mutation p.G6031E 0.17 probably_damaging(0.935) TCGA-IB-7651-01 2 186672574 186672574 G T FSIP2 Nonsense_Mutation p.E6270* 0.28 TCGA-IB-7651-01 2 186678279 186678279 C T FSIP2 Missense_Mutation p.A6701V 0.22 benign(0.042) TCGA-IB-7651-01 2 187370212 187370212 C T ZC3H15 Missense_Mutation p.T251I 0.22 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 2 187455135 187455135 C A ITGAV Missense_Mutation p.L24M 0.22 tolerated(0.19) unknown(0) TCGA-IB-7651-01 2 187503186 187503186 C T ITGAV Silent p.G299G 0.16 TCGA-IB-7651-01 2 187531458 187531458 C T ITGAV Missense_Mutation p.H732Y 0.15 tolerated(0.07) probably_damaging(0.931) TCGA-IB-7651-01 2 187627620 187627620 G A FAM171B 3'UTR 0.17 TCGA-IB-7651-01 2 18767552 18767552 C A NT5C1B Missense_Mutation p.D136Y 0.26 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-IB-7651-01 2 187694554 187694554 G A ZSWIM2 Missense_Mutation p.T332I 0.18 deleterious(0.04) probably_damaging(0.988) TCGA-IB-7651-01 2 188332545 188332545 C T TFPI Missense_Mutation p.S248N 0.23 deleterious(0.01) probably_damaging(0.981) TCGA-IB-7651-01 2 188361643 188361643 T G TFPI Missense_Mutation p.E95A 0.17 tolerated(0.57) benign(0.084) TCGA-IB-7651-01 2 1893190 1893190 C T MYT1L Silent p.R779R 0.17 TCGA-IB-7651-01 2 189599453 189599453 G A DIRC1 Silent p.C65C 0.24 TCGA-IB-7651-01 2 189862066 189862066 C T COL3A1 Missense_Mutation p.P607L 0.17 unknown(0) TCGA-IB-7651-01 2 189872614 189872614 C T COL3A1 Missense_Mutation p.P1123S 0.24 unknown(0) TCGA-IB-7651-01 2 189901341 189901341 C T COL5A2 Splice_Site p.X1371_splice 0.23 TCGA-IB-7651-01 2 189914108 189914108 C T COL5A2 Missense_Mutation p.G1038S 0.22 unknown(0) TCGA-IB-7651-01 2 189917698 189917698 C T COL5A2 Missense_Mutation p.G867E 0.14 unknown(0) TCGA-IB-7651-01 2 189929383 189929383 T G COL5A2 Splice_Site p.X540_splice 0.13 TCGA-IB-7651-01 2 189975161 189975161 C A COL5A2 Nonsense_Mutation p.E38* 0.15 TCGA-IB-7651-01 2 190426914 190426914 A G SLC40A1 Missense_Mutation p.L469P 0.24 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 190531602 190531602 G A ASNSD1 Silent p.L248L 0.17 TCGA-IB-7651-01 2 190593005 190593005 G A ANKAR Missense_Mutation p.D964N 0.25 tolerated(0.08) benign(0.006) TCGA-IB-7651-01 2 190728551 190728551 C T PMS1 Silent p.L647L 0.25 TCGA-IB-7651-01 2 190742119 190742119 G A PMS1 Missense_Mutation p.R919H 0.26 tolerated(0.08) possibly_damaging(0.548) TCGA-IB-7651-01 2 190924940 190924940 C A MSTN Missense_Mutation p.G199C 0.18 deleterious(0.01) probably_damaging(0.926) TCGA-IB-7651-01 2 191064772 191064772 A G C2orf88 Silent p.A62A 0.15 TCGA-IB-7651-01 2 191236179 191236179 C T INPP1 3'UTR 0.38 TCGA-IB-7651-01 2 191301736 191301736 G A MFSD6 Silent p.Q327Q 0.26 TCGA-IB-7651-01 2 191769834 191769834 G A GLS Missense_Mutation p.R307Q 0.18 tolerated(0.6) benign(0.175) TCGA-IB-7651-01 2 191797507 191797507 G A GLS Intron 0.24 TCGA-IB-7651-01 2 191840588 191840588 G A STAT1 Silent p.G695G 0.22 TCGA-IB-7651-01 2 191850364 191850364 G T STAT1 Missense_Mutation p.A415D 0.25 tolerated(0.08) possibly_damaging(0.66) TCGA-IB-7651-01 2 191894513 191894513 G A STAT4 3'UTR 0.05 TCGA-IB-7651-01 2 191905836 191905836 C T STAT4 Silent p.T430T 0.23 TCGA-IB-7651-01 2 192225372 192225372 C A MYO1B Missense_Mutation p.S193Y 0.05 deleterious(0) possibly_damaging(0.903) TCGA-IB-7651-01 2 192234334 192234334 C T MYO1B Nonsense_Mutation p.R367* 0.09 TCGA-IB-7651-01 2 192267420 192267420 T G MYO1B Missense_Mutation p.I844M 0.31 tolerated(0.06) probably_damaging(0.991) TCGA-IB-7651-01 2 1926559 1926559 C A MYT1L Nonsense_Mutation p.E328* 0.26 TCGA-IB-7651-01 2 1926671 1926671 C T MYT1L Silent p.S290S 0.13 TCGA-IB-7651-01 2 192711348 192711348 T C SDPR Missense_Mutation p.K102E 0.16 deleterious(0.02) possibly_damaging(0.661) TCGA-IB-7651-01 2 192711440 192711440 G T SDPR Missense_Mutation p.A71D 0.24 tolerated(0.08) possibly_damaging(0.474) TCGA-IB-7651-01 2 193059311 193059311 C T TMEFF2 5'UTR 0.37 TCGA-IB-7651-01 2 193059364 193059364 G A TMEFF2 5'UTR 0.09 TCGA-IB-7651-01 2 19551954 19551954 G A OSR1 3'UTR 0.16 TCGA-IB-7651-01 2 19551998 19551998 C T OSR1 3'UTR 0.30 TCGA-IB-7651-01 2 196741347 196741347 G T DNAH7 Missense_Mutation p.A2013D 0.08 deleterious(0.03) benign(0.155) TCGA-IB-7651-01 2 196746544 196746544 C T DNAH7 Missense_Mutation p.G1979E 0.14 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 2 196746672 196746672 A G DNAH7 Silent p.A1936A 0.13 TCGA-IB-7651-01 2 196788367 196788367 G A DNAH7 Silent p.S1259S 0.15 TCGA-IB-7651-01 2 197143304 197143304 G A HECW2 Missense_Mutation p.A1028V 0.05 tolerated(0.32) benign(0.022) TCGA-IB-7651-01 2 197157417 197157417 G A HECW2 Missense_Mutation p.R958W 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 197183767 197183767 G T HECW2 Missense_Mutation p.P616H 0.30 tolerated_low_confidence(0.09) benign(0.003) TCGA-IB-7651-01 2 197184558 197184558 G A HECW2 Silent p.S352S 0.16 TCGA-IB-7651-01 2 197297957 197297957 C T HECW2 Missense_Mutation p.S64N 0.28 deleterious(0.05) probably_damaging(0.924) TCGA-IB-7651-01 2 197596779 197596779 C A CCDC150 Missense_Mutation p.A1031D 0.25 deleterious(0) possibly_damaging(0.493) TCGA-IB-7651-01 2 197654005 197654005 A G GTF3C3 Silent p.D272D 0.27 TCGA-IB-7651-01 2 198285014 198285014 A G SF3B1 Intron 0.23 TCGA-IB-7651-01 2 198361910 198361910 G A HSPD1 Silent p.G127G 0.17 TCGA-IB-7651-01 2 198363569 198363569 G A HSPD1 Missense_Mutation p.L2F 0.17 tolerated_low_confidence(0.41) benign(0.004) TCGA-IB-7651-01 2 198405148 198405148 A C HSPE1-MOB4 Missense_Mutation p.K150T 0.19 tolerated(0.12) probably_damaging(0.994) TCGA-IB-7651-01 2 198460765 198460765 C T RFTN2 Missense_Mutation p.V395I 0.06 tolerated(0.13) benign(0.12) TCGA-IB-7651-01 2 198460774 198460774 T C RFTN2 Missense_Mutation p.K392E 0.14 deleterious(0) probably_damaging(0.911) TCGA-IB-7651-01 2 198540075 198540075 G A RFTN2 Silent p.Y36Y 0.08 TCGA-IB-7651-01 2 198570573 198570573 G A MARS2 Silent p.Q148Q 0.29 TCGA-IB-7651-01 2 198949647 198949647 G A PLCL1 Missense_Mutation p.R469Q 0.23 tolerated(0.1) benign(0.055) TCGA-IB-7651-01 2 198950755 198950755 C T PLCL1 Silent p.H838H 0.27 TCGA-IB-7651-01 2 198950910 198950910 C T PLCL1 Missense_Mutation p.A890V 0.19 deleterious(0.03) possibly_damaging(0.849) TCGA-IB-7651-01 2 198968628 198968628 G A PLCL1 Missense_Mutation p.E1025K 0.22 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 2 199011668 199011668 G A PLCL1 Silent p.E1090E 0.16 TCGA-IB-7651-01 2 199011714 199011714 A G PLCL1 3'UTR 0.26 TCGA-IB-7651-01 2 200137033 200137033 G A SATB2 Silent p.N701N 0.19 TCGA-IB-7651-01 2 200137187 200137187 G A SATB2 Missense_Mutation p.A650V 0.15 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 2 200173513 200173513 G A SATB2 Silent p.H570H 0.17 TCGA-IB-7651-01 2 200790131 200790131 C T C2orf69 Missense_Mutation p.T227M 0.08 deleterious(0.04) possibly_damaging(0.906) TCGA-IB-7651-01 2 200820477 200820477 C A C2orf47 5'UTR 0.27 TCGA-IB-7651-01 2 20113267 20113267 C A WDR35 3'UTR 0.20 TCGA-IB-7651-01 2 20133266 20133266 C T WDR35 Missense_Mutation p.A863T 0.27 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 2 201355148 201355148 C T KCTD18 Missense_Mutation p.R319H 0.27 tolerated_low_confidence(0.55) benign(0) TCGA-IB-7651-01 2 201355283 201355283 T G KCTD18 Missense_Mutation p.K274T 0.26 deleterious_low_confidence(0.05) benign(0.139) TCGA-IB-7651-01 2 201469468 201469468 G T AOX1 Missense_Mutation p.R240I 0.14 deleterious(0.01) probably_damaging(0.981) TCGA-IB-7651-01 2 201535442 201535442 C T AOX1 3'UTR 0.13 TCGA-IB-7651-01 2 201686949 201686949 A C BZW1 3'UTR 0.28 TCGA-IB-7651-01 2 201722536 201722536 A C CLK1 Missense_Mutation p.L288R 0.14 deleterious(0.03) possibly_damaging(0.887) TCGA-IB-7651-01 2 201722711 201722711 T C CLK1 Missense_Mutation p.D259G 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 2 201722796 201722796 C A CLK1 Missense_Mutation p.A231S 0.14 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 201736072 201736072 G T PPIL3 3'UTR 0.08 TCGA-IB-7651-01 2 201822814 201822814 C T ORC2 Missense_Mutation p.M11I 0.25 tolerated(0.41) benign(0.001) TCGA-IB-7651-01 2 201845928 201845928 G A FAM126B 3'UTR 0.24 TCGA-IB-7651-01 2 201887576 201887576 A C FAM126B Missense_Mutation p.V44G 0.15 deleterious(0) probably_damaging(0.95) TCGA-IB-7651-01 2 201994421 201994421 G T CFLAR Intron 0.17 TCGA-IB-7651-01 2 201994608 201994608 A G CFLAR Missense_Mutation p.H7R 0.23 deleterious(0.04) benign(0.208) TCGA-IB-7651-01 2 201994684 201994684 G A CFLAR Silent p.V32V 0.24 TCGA-IB-7651-01 2 202005146 202005146 C A CFLAR Missense_Mutation p.P197H 0.25 deleterious(0.03) benign(0.064) TCGA-IB-7651-01 2 202025276 202025276 C T CFLAR Silent p.Y305Y 0.09 TCGA-IB-7651-01 2 202050562 202050562 G A CASP10 Missense_Mutation p.R21H 0.24 tolerated(0.08) benign(0.429) TCGA-IB-7651-01 2 202065193 202065193 G T CASP10 Intron 0.26 TCGA-IB-7651-01 2 202149924 202149924 G A CASP8 Silent p.E455E 0.26 TCGA-IB-7651-01 2 202150030 202150030 C T CASP8 Nonsense_Mutation p.R491* 0.24 TCGA-IB-7651-01 2 202254168 202254168 A G TRAK2 Missense_Mutation p.S418P 0.14 deleterious(0.01) benign(0.098) TCGA-IB-7651-01 2 202257678 202257678 G T TRAK2 Missense_Mutation p.P356H 0.20 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 2 202272137 202272137 A T TRAK2 Missense_Mutation p.F92Y 0.28 deleterious(0) probably_damaging(0.943) TCGA-IB-7651-01 2 202339474 202339474 C T STRADB Silent p.A140A 0.25 TCGA-IB-7651-01 2 202492840 202492840 C T TMEM237 Missense_Mutation p.R301Q 0.17 deleterious(0.03) probably_damaging(1) TCGA-IB-7651-01 2 202520927 202520927 G T MPP4 Missense_Mutation p.L432I 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 2 202622146 202622146 G T ALS2 Missense_Mutation p.L484I 0.07 deleterious(0.01) probably_damaging(0.947) TCGA-IB-7651-01 2 202625825 202625825 C A ALS2 Missense_Mutation p.D298Y 0.24 deleterious(0.02) benign(0) TCGA-IB-7651-01 2 202632036 202632036 T G ALS2 Missense_Mutation p.T31P 0.28 deleterious(0.04) benign(0.221) TCGA-IB-7651-01 2 202744776 202744776 G T CDK15 Missense_Mutation p.D362Y 0.06 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 2 202744820 202744820 C A CDK15 Silent p.V376V 0.21 TCGA-IB-7651-01 2 202900639 202900639 C T FZD7 Silent p.G423G 0.24 TCGA-IB-7651-01 2 203395674 203395674 C T BMPR2 Silent p.S375S 0.08 TCGA-IB-7651-01 2 203420850 203420850 C T BMPR2 Missense_Mutation p.A821V 0.17 tolerated(0.41) benign(0.001) TCGA-IB-7651-01 2 203424682 203424682 C T BMPR2 3'UTR 0.20 TCGA-IB-7651-01 2 203776227 203776227 G T WDR12 5'UTR 0.26 TCGA-IB-7651-01 2 204016309 204016309 C T NBEAL1 Silent p.L1833L 0.13 TCGA-IB-7651-01 2 204032000 204032000 C A NBEAL1 Missense_Mutation p.L1943I 0.16 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 2 204131313 204131313 G A CYP20A1 Missense_Mutation p.G170D 0.26 tolerated(0.07) possibly_damaging(0.596) TCGA-IB-7651-01 2 204156990 204156990 C T CYP20A1 Silent p.L363L 0.13 TCGA-IB-7651-01 2 204231708 204231708 C A ABI2 Missense_Mutation p.L76M 0.19 deleterious(0.05) probably_damaging(0.997) TCGA-IB-7651-01 2 204313471 204313471 C T RAPH1 Missense_Mutation p.R501H 0.22 probably_damaging(0.998) TCGA-IB-7651-01 2 204737463 204737463 C A CTLA4 Silent p.V200V 0.09 TCGA-IB-7651-01 2 20511261 20511261 T G PUM2 Missense_Mutation p.D171A 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.883) TCGA-IB-7651-01 2 205983693 205983693 G A PARD3B Silent p.K243K 0.17 TCGA-IB-7651-01 2 206110532 206110532 C T PARD3B Missense_Mutation p.A662V 0.25 tolerated(0.38) benign(0.042) TCGA-IB-7651-01 2 206165326 206165326 C T PARD3B Missense_Mutation p.A691V 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 206166414 206166414 C T PARD3B Silent p.G811G 0.19 TCGA-IB-7651-01 2 206590675 206590675 C T NRP2 Missense_Mutation p.R287W 0.07 deleterious(0) probably_damaging(0.914) TCGA-IB-7651-01 2 206592644 206592644 G A NRP2 Silent p.T340T 0.23 TCGA-IB-7651-01 2 206608031 206608031 C T NRP2 Missense_Mutation p.R466C 0.24 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 206641143 206641143 G A NRP2 Intron 0.17 TCGA-IB-7651-01 2 206659526 206659526 C A NRP2 Missense_Mutation p.S847Y 0.19 deleterious(0.03) benign(0.266) TCGA-IB-7651-01 2 206659634 206659634 G A NRP2 Missense_Mutation p.C883Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 206870181 206870181 G A INO80D Silent p.L665L 0.18 TCGA-IB-7651-01 2 207012502 207012502 T C NDUFS1 Missense_Mutation p.D146G 0.28 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 207169653 207169653 G A ZDBF2 Missense_Mutation p.R134Q 0.29 deleterious(0) benign(0.238) TCGA-IB-7651-01 2 207170780 207170780 C T ZDBF2 Nonsense_Mutation p.Q510* 0.14 TCGA-IB-7651-01 2 207172649 207172649 G T ZDBF2 Missense_Mutation p.V1133L 0.16 tolerated(0.19) benign(0.097) TCGA-IB-7651-01 2 207172773 207172773 G A ZDBF2 Missense_Mutation p.R1174Q 0.17 tolerated(1) benign(0.238) TCGA-IB-7651-01 2 207175371 207175371 G A ZDBF2 Missense_Mutation p.R2040Q 0.14 tolerated(1) benign(0) TCGA-IB-7651-01 2 207424741 207424741 G A ADAM23 Silent p.K356K 0.18 TCGA-IB-7651-01 2 207604335 207604335 T C MDH1B Missense_Mutation p.S504G 0.14 tolerated_low_confidence(0.36) benign(0) TCGA-IB-7651-01 2 207620181 207620181 G A MDH1B Silent p.G154G 0.13 TCGA-IB-7651-01 2 207631704 207631704 G T FASTKD2 Missense_Mutation p.S96I 0.13 tolerated(0.09) benign(0.025) TCGA-IB-7651-01 2 207631743 207631743 C T FASTKD2 Missense_Mutation p.A109V 0.09 deleterious(0.02) benign(0.142) TCGA-IB-7651-01 2 207655375 207655375 C T FASTKD2 Missense_Mutation p.R660W 0.12 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 207823081 207823081 C T CPO Silent p.H108H 0.04 TCGA-IB-7651-01 2 207824388 207824388 C T CPO Missense_Mutation p.R136C 0.11 deleterious(0.01) possibly_damaging(0.773) TCGA-IB-7651-01 2 208589556 208589556 C T CCNYL1 Missense_Mutation p.P85S 0.18 tolerated(0.07) probably_damaging(0.969) TCGA-IB-7651-01 2 20871120 20871120 G A GDF7 Missense_Mutation p.A430T 0.15 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 2 208811193 208811193 C T PLEKHM3 Silent p.V530V 0.23 TCGA-IB-7651-01 2 208986578 208986578 C T CRYGD Missense_Mutation p.R115H 0.18 tolerated(0.11) benign(0.026) TCGA-IB-7651-01 2 208994239 208994239 G A CRYGC Nonsense_Mutation p.R60* 0.27 TCGA-IB-7651-01 2 209010739 209010739 A G CRYGB Missense_Mutation p.I4T 0.25 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 209025513 209025513 C T CRYGA 3'UTR 0.25 TCGA-IB-7651-01 2 209113362 209113362 G A IDH1 Missense_Mutation p.R49C 0.26 deleterious_low_confidence(0.02) benign(0.428) TCGA-IB-7651-01 2 20939749 20939749 A C C2orf43 Missense_Mutation p.L229V 0.26 tolerated(0.1) possibly_damaging(0.465) TCGA-IB-7651-01 2 210559824 210559824 C T MAP2 Missense_Mutation p.A977V 0.19 tolerated_low_confidence(0.1) benign(0.155) TCGA-IB-7651-01 2 210642102 210642102 G A UNC80 Missense_Mutation p.S140N 0.15 possibly_damaging(0.886) TCGA-IB-7651-01 2 210880820 210880820 G A RPE Missense_Mutation p.R109Q 0.26 tolerated(0.17) benign(0.044) TCGA-IB-7651-01 2 210882204 210882204 G T RPE Missense_Mutation p.W162L 0.20 tolerated(0.66) benign(0.014) TCGA-IB-7651-01 2 211018284 211018284 G A KANSL1L Silent p.S341S 0.26 TCGA-IB-7651-01 2 211074960 211074960 G A ACADL Missense_Mutation p.A188V 0.24 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 2 211319832 211319832 G A LANCL1 Missense_Mutation p.R136W 0.23 deleterious(0.03) benign(0.012) TCGA-IB-7651-01 2 211454881 211454881 G A CPS1 Missense_Mutation p.E261K 0.22 tolerated(0.12) benign(0.039) TCGA-IB-7651-01 2 211481151 211481151 T A CPS1 Missense_Mutation p.I864N 0.15 deleterious(0) benign(0.311) TCGA-IB-7651-01 2 211502491 211502491 C A CPS1 Nonsense_Mutation p.S924* 0.19 TCGA-IB-7651-01 2 211521337 211521337 G A CPS1 Missense_Mutation p.S1222N 0.26 tolerated(1) possibly_damaging(0.464) TCGA-IB-7651-01 2 211533008 211533008 G A CPS1 Silent p.Q1373Q 0.27 TCGA-IB-7651-01 2 212251629 212251629 C A ERBB4 Nonsense_Mutation p.E1144* 0.08 TCGA-IB-7651-01 2 21226159 21226159 G A APOB Silent p.V4045V 0.15 TCGA-IB-7651-01 2 212285171 212285171 T C ERBB4 Missense_Mutation p.N1044D 0.23 tolerated(0.09) benign(0.051) TCGA-IB-7651-01 2 212285274 212285274 A G ERBB4 Silent p.D1009D 0.23 TCGA-IB-7651-01 2 212285328 212285328 A G ERBB4 Silent p.D991D 0.26 TCGA-IB-7651-01 2 21229067 21229067 C T APOB Missense_Mutation p.R3558H 0.29 benign(0.066) TCGA-IB-7651-01 2 21229127 21229127 A C APOB Missense_Mutation p.I3538S 0.24 benign(0.084) TCGA-IB-7651-01 2 21233266 21233266 A G APOB Silent p.I2158I 0.27 TCGA-IB-7651-01 2 21233848 21233848 A G APOB Silent p.L1964L 0.28 TCGA-IB-7651-01 2 21236120 21236120 G A APOB Silent p.G1376G 0.24 TCGA-IB-7651-01 2 21238318 21238318 G A APOB Silent p.A1144A 0.16 TCGA-IB-7651-01 2 21245781 21245781 G T APOB Missense_Mutation p.A913D 0.09 probably_damaging(0.939) TCGA-IB-7651-01 2 212488760 212488760 G A ERBB4 Missense_Mutation p.P697S 0.18 deleterious(0) possibly_damaging(0.863) TCGA-IB-7651-01 2 212495251 212495251 G T ERBB4 Missense_Mutation p.A672D 0.24 deleterious(0.01) possibly_damaging(0.84) TCGA-IB-7651-01 2 21250864 21250864 G A APOB Missense_Mutation p.R635W 0.17 probably_damaging(0.966) TCGA-IB-7651-01 2 212615400 212615400 G A ERBB4 Missense_Mutation p.R196C 0.17 tolerated(0.17) probably_damaging(0.971) TCGA-IB-7651-01 2 213872294 213872294 G T IKZF2 Silent p.I457I 0.25 TCGA-IB-7651-01 2 213878658 213878658 A G IKZF2 Missense_Mutation p.V238A 0.15 tolerated(0.44) benign(0.004) TCGA-IB-7651-01 2 214354799 214354799 A C SPAG16 Missense_Mutation p.E352A 0.17 tolerated(0.4) benign(0.186) TCGA-IB-7651-01 2 215610503 215610503 G T BARD1 Missense_Mutation p.L585I 0.17 deleterious(0) possibly_damaging(0.862) TCGA-IB-7651-01 2 215646005 215646005 G A BARD1 Missense_Mutation p.A198V 0.14 tolerated(0.28) benign(0.006) TCGA-IB-7651-01 2 215815605 215815605 C A ABCA12 Nonsense_Mutation p.E2284* 0.05 TCGA-IB-7651-01 2 215815716 215815716 C T ABCA12 Missense_Mutation p.G2247S 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 215820074 215820074 A G ABCA12 Missense_Mutation p.F2082S 0.24 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 2 215838750 215838750 C A ABCA12 Missense_Mutation p.D1829Y 0.16 deleterious(0.01) possibly_damaging(0.776) TCGA-IB-7651-01 2 215845305 215845305 C T ABCA12 Missense_Mutation p.A1548T 0.06 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 215847042 215847042 A G ABCA12 Missense_Mutation p.M1483T 0.16 deleterious(0.04) probably_damaging(0.919) TCGA-IB-7651-01 2 215862523 215862523 T G ABCA12 Missense_Mutation p.S1064R 0.17 deleterious(0) possibly_damaging(0.887) TCGA-IB-7651-01 2 215876354 215876354 C T ABCA12 Missense_Mutation p.R714Q 0.16 tolerated(0.2) benign(0.002) TCGA-IB-7651-01 2 215928871 215928871 C A ABCA12 Missense_Mutation p.D79Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 216211553 216211553 T G ATIC Nonsense_Mutation p.Y464* 0.29 TCGA-IB-7651-01 2 216240026 216240026 C T FN1 Missense_Mutation p.G2023D 0.05 deleterious(0.04) probably_damaging(1) TCGA-IB-7651-01 2 216249593 216249593 G A FN1 Silent p.Y1573Y 0.13 TCGA-IB-7651-01 2 216251446 216251446 C T FN1 Silent p.E1526E 0.06 TCGA-IB-7651-01 2 216257885 216257885 C T FN1 Missense_Mutation p.D1280N 0.13 deleterious(0.03) probably_damaging(0.989) TCGA-IB-7651-01 2 216292951 216292951 C A FN1 Nonsense_Mutation p.G266* 0.18 TCGA-IB-7651-01 2 216977824 216977824 A G XRCC5 Missense_Mutation p.K36R 0.17 deleterious(0.04) benign(0.195) TCGA-IB-7651-01 2 217002842 217002842 G A XRCC5 Missense_Mutation p.E428K 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 217234861 217234861 G T MARCH4 Silent p.R41R 0.22 TCGA-IB-7651-01 2 217234986 217234986 G A MARCH4 5'UTR 0.29 TCGA-IB-7651-01 2 217279897 217279897 C T SMARCAL1 Missense_Mutation p.T157I 0.25 tolerated_low_confidence(0.11) benign(0.009) TCGA-IB-7651-01 2 217285059 217285059 G A SMARCAL1 Silent p.Q300Q 0.08 TCGA-IB-7651-01 2 217285073 217285073 C T SMARCAL1 Missense_Mutation p.A305V 0.23 tolerated(0.59) benign(0.002) TCGA-IB-7651-01 2 217315692 217315692 C T SMARCAL1 Missense_Mutation p.R659C 0.25 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 2 217341855 217341855 C T SMARCAL1 Silent p.R817R 0.18 TCGA-IB-7651-01 2 217526595 217526595 G A IGFBP2 Silent p.Q229Q 0.20 TCGA-IB-7651-01 2 217543756 217543756 G A IGFBP5 Silent p.A128A 0.07 TCGA-IB-7651-01 2 217559274 217559274 G T IGFBP5 Silent p.A75A 0.19 TCGA-IB-7651-01 2 218713723 218713723 G A TNS1 Missense_Mutation p.A381V 0.17 tolerated(0.19) benign(0.129) TCGA-IB-7651-01 2 218749800 218749800 C T TNS1 Missense_Mutation p.G277R 0.20 tolerated(0.08) probably_damaging(0.965) TCGA-IB-7651-01 2 218757686 218757686 C A TNS1 Missense_Mutation p.S131I 0.19 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 2 219000157 219000157 A G CXCR2 Silent p.L211L 0.07 TCGA-IB-7651-01 2 219029240 219029240 G A CXCR1 Missense_Mutation p.A232V 0.21 deleterious(0.05) possibly_damaging(0.752) TCGA-IB-7651-01 2 219029293 219029293 C T CXCR1 Silent p.P214P 0.20 TCGA-IB-7651-01 2 219099092 219099092 C T ARPC2 Silent p.Y80Y 0.23 TCGA-IB-7651-01 2 219103454 219103454 A C ARPC2 Missense_Mutation p.Q112H 0.26 tolerated(0.11) benign(0.011) TCGA-IB-7651-01 2 219127826 219127826 G A GPBAR1 Missense_Mutation p.A127T 0.29 tolerated(0.07) probably_damaging(0.999) TCGA-IB-7651-01 2 219129161 219129161 C T AAMP 3'UTR 0.15 TCGA-IB-7651-01 2 219140197 219140197 C A TMBIM1 3'UTR 0.19 TCGA-IB-7651-01 2 219295496 219295496 C T VIL1 Nonsense_Mutation p.Q333* 0.06 TCGA-IB-7651-01 2 219295631 219295631 C T VIL1 Intron 0.28 TCGA-IB-7651-01 2 219374752 219374752 C T USP37 Nonsense_Mutation p.W325* 0.08 TCGA-IB-7651-01 2 219494329 219494329 G A PLCD4 Silent p.L354L 0.08 TCGA-IB-7651-01 2 219497008 219497008 G A PLCD4 Silent p.Q474Q 0.34 TCGA-IB-7651-01 2 219498467 219498467 G A PLCD4 Missense_Mutation p.R530H 0.30 deleterious(0.02) benign(0.001) TCGA-IB-7651-01 2 219506771 219506771 C T ZNF142 Missense_Mutation p.A1490T 0.24 tolerated(0.06) possibly_damaging(0.787) TCGA-IB-7651-01 2 219513829 219513829 G T ZNF142 Missense_Mutation p.L268I 0.21 deleterious(0) possibly_damaging(0.694) TCGA-IB-7651-01 2 219525923 219525923 T C BCS1L Silent p.S71S 0.06 TCGA-IB-7651-01 2 219525943 219525943 G A BCS1L Missense_Mutation p.S78N 0.06 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 2 219526526 219526526 T C BCS1L Missense_Mutation p.Y169H 0.18 tolerated(0.1) benign(0.163) TCGA-IB-7651-01 2 219527252 219527252 C T BCS1L Silent p.L247L 0.12 TCGA-IB-7651-01 2 219528785 219528785 G T RNF25 Silent p.G425G 0.29 TCGA-IB-7651-01 2 219538400 219538400 G T STK36 Missense_Mutation p.R46M 0.24 deleterious(0) possibly_damaging(0.704) TCGA-IB-7651-01 2 219566753 219566753 G A STK36 3'UTR 0.21 TCGA-IB-7651-01 2 219602420 219602420 G A TTLL4 Silent p.Q7Q 0.13 TCGA-IB-7651-01 2 219602698 219602698 G A TTLL4 Missense_Mutation p.S100N 0.27 tolerated(0.3) benign(0.001) TCGA-IB-7651-01 2 219692564 219692564 G A PRKAG3 Missense_Mutation p.T271I 0.13 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 2 219738522 219738522 G A WNT6 Silent p.Q351Q 0.18 TCGA-IB-7651-01 2 219870946 219870946 C A CCDC108 Splice_Site p.X1574_splice 0.16 TCGA-IB-7651-01 2 219874743 219874743 C T CCDC108 Missense_Mutation p.R1458H 0.18 tolerated(0.06) possibly_damaging(0.793) TCGA-IB-7651-01 2 219884315 219884315 C T CCDC108 Missense_Mutation p.R1129H 0.25 tolerated(0.28) benign(0.045) TCGA-IB-7651-01 2 220037375 220037375 G T CNPPD1 Missense_Mutation p.P389H 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.809) TCGA-IB-7651-01 2 220075733 220075733 A G ABCB6 Missense_Mutation p.V689A 0.14 tolerated(0.1) benign(0.012) TCGA-IB-7651-01 2 220077786 220077786 G A ABCB6 Missense_Mutation p.R603W 0.11 deleterious(0) benign(0.43) TCGA-IB-7651-01 2 220088899 220088899 G A ATG9A Silent p.D398D 0.18 TCGA-IB-7651-01 2 220100257 220100257 C T ANKZF1 Nonsense_Mutation p.R585* 0.20 TCGA-IB-7651-01 2 220101213 220101213 A G ANKZF1 3'UTR 0.14 TCGA-IB-7651-01 2 220102328 220102328 G T GLB1L Missense_Mutation p.P532H 0.23 tolerated(0.14) benign(0.004) TCGA-IB-7651-01 2 220107551 220107551 G T GLB1L Missense_Mutation p.A110D 0.25 tolerated(0.37) benign(0.021) TCGA-IB-7651-01 2 220115518 220115518 C T TUBA4A Silent p.Q301Q 0.27 TCGA-IB-7651-01 2 220116407 220116407 C T TUBA4A Silent p.Q85Q 0.17 TCGA-IB-7651-01 2 220162648 220162648 C T PTPRN Missense_Mutation p.G616R 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 220162710 220162710 G T PTPRN Missense_Mutation p.A595D 0.23 deleterious(0.01) benign(0.323) TCGA-IB-7651-01 2 220162753 220162753 G A PTPRN Silent p.L581L 0.22 TCGA-IB-7651-01 2 220167053 220167053 G A PTPRN Missense_Mutation p.P267L 0.18 tolerated(0.47) benign(0.003) TCGA-IB-7651-01 2 220286186 220286186 G A DES Missense_Mutation p.R383H 0.23 deleterious(0.03) probably_damaging(0.993) TCGA-IB-7651-01 2 220336654 220336654 C T SPEG Silent p.S1260S 0.17 TCGA-IB-7651-01 2 220338459 220338459 G T SPEG Silent p.G1427G 0.15 TCGA-IB-7651-01 2 220348005 220348005 G A SPEG Silent p.Q1940Q 0.28 TCGA-IB-7651-01 2 220356957 220356957 C T SPEG Nonsense_Mutation p.R3196* 0.26 TCGA-IB-7651-01 2 220366724 220366724 C T GMPPA Missense_Mutation p.R132C 0.09 deleterious(0.03) benign(0.004) TCGA-IB-7651-01 2 220370767 220370767 C A GMPPA Missense_Mutation p.S322R 0.18 deleterious(0) possibly_damaging(0.611) TCGA-IB-7651-01 2 220379804 220379804 A G ASIC4 Missense_Mutation p.I247V 0.06 tolerated(0.13) benign(0.1) TCGA-IB-7651-01 2 220379823 220379823 C T ASIC4 Missense_Mutation p.S253L 0.31 tolerated(0.07) benign(0.239) TCGA-IB-7651-01 2 220379912 220379912 C T ASIC4 Missense_Mutation p.R283C 0.16 deleterious(0.01) possibly_damaging(0.876) TCGA-IB-7651-01 2 220397076 220397076 G T ASIC4 Nonsense_Mutation p.E426* 0.19 TCGA-IB-7651-01 2 220404532 220404532 G T CHPF Missense_Mutation p.S634Y 0.07 deleterious(0) possibly_damaging(0.796) TCGA-IB-7651-01 2 220409581 220409581 G A TMEM198 Missense_Mutation p.M44I 0.16 deleterious(0.02) benign(0.072) TCGA-IB-7651-01 2 220412347 220412347 G A TMEM198 Missense_Mutation p.A96T 0.16 deleterious(0.01) possibly_damaging(0.798) TCGA-IB-7651-01 2 220412405 220412405 G A TMEM198 Missense_Mutation p.S115N 0.16 deleterious(0.03) possibly_damaging(0.517) TCGA-IB-7651-01 2 220424002 220424002 G A OBSL1 Silent p.G1057G 0.16 TCGA-IB-7651-01 2 220431577 220431577 C A OBSL1 Missense_Mutation p.Q703H 0.17 tolerated(0.11) benign(0.017) TCGA-IB-7651-01 2 220473436 220473436 C T STK11IP Nonsense_Mutation p.R590* 0.07 TCGA-IB-7651-01 2 220473895 220473895 G A STK11IP Missense_Mutation p.R640H 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-IB-7651-01 2 220479906 220479906 C A STK11IP Missense_Mutation p.S998Y 0.08 deleterious(0.02) benign(0.115) TCGA-IB-7651-01 2 220479972 220479972 G A STK11IP Missense_Mutation p.R1020H 0.15 tolerated(0.63) benign(0.001) TCGA-IB-7651-01 2 220496996 220496996 C T SLC4A3 Silent p.L352L 0.19 TCGA-IB-7651-01 2 220497695 220497695 G A SLC4A3 Missense_Mutation p.R441K 0.15 deleterious(0.03) probably_damaging(0.958) TCGA-IB-7651-01 2 220504209 220504209 T G SLC4A3 Missense_Mutation p.I1037S 0.15 deleterious(0.01) benign(0.297) TCGA-IB-7651-01 2 222294720 222294720 C T EPHA4 Missense_Mutation p.R883H 0.14 deleterious(0.02) possibly_damaging(0.873) TCGA-IB-7651-01 2 222428879 222428879 T C EPHA4 Missense_Mutation p.D132G 0.04 deleterious(0.03) probably_damaging(0.989) TCGA-IB-7651-01 2 223496342 223496342 G A FARSB Missense_Mutation p.T256M 0.22 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 2 223773626 223773626 G A ACSL3 Missense_Mutation p.E46K 0.16 tolerated(0.94) benign(0.014) TCGA-IB-7651-01 2 223783810 223783810 G A ACSL3 Missense_Mutation p.R232Q 0.23 tolerated(0.42) benign(0.053) TCGA-IB-7651-01 2 223786120 223786120 G T ACSL3 Missense_Mutation p.G310W 0.23 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 223917882 223917882 G A KCNE4 Missense_Mutation p.A112T 0.28 deleterious(0.03) benign(0.17) TCGA-IB-7651-01 2 224463355 224463355 G A SCG2 Missense_Mutation p.R216C 0.16 deleterious(0) probably_damaging(0.961) TCGA-IB-7651-01 2 224463404 224463404 T A SCG2 Missense_Mutation p.E199D 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 2 224856691 224856691 C A SERPINE2 Missense_Mutation p.D184Y 0.20 deleterious(0.02) probably_damaging(0.953) TCGA-IB-7651-01 2 224866571 224866571 G T SERPINE2 Missense_Mutation p.P28H 0.14 tolerated(0.14) benign(0.2) TCGA-IB-7651-01 2 225266170 225266170 G T FAM124B Missense_Mutation p.L106M 0.07 tolerated(0.26) possibly_damaging(0.715) TCGA-IB-7651-01 2 225362504 225362504 T C CUL3 Missense_Mutation p.D558G 0.21 deleterious(0.01) probably_damaging(0.967) TCGA-IB-7651-01 2 225637950 225637950 A C DOCK10 Missense_Mutation p.L2043R 0.23 deleterious(0) probably_damaging(0.971) TCGA-IB-7651-01 2 225639794 225639794 G A DOCK10 Silent p.I1947I 0.22 TCGA-IB-7651-01 2 225651780 225651780 G A DOCK10 Missense_Mutation p.R1872W 0.27 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 226447226 226447226 G A NYAP2 Missense_Mutation p.V365M 0.16 tolerated(0.53) probably_damaging(0.985) TCGA-IB-7651-01 2 226516173 226516173 C T NYAP2 Silent p.G618G 0.16 TCGA-IB-7651-01 2 227660982 227660982 G A IRS1 Silent p.L825L 0.07 TCGA-IB-7651-01 2 227771551 227771551 A G RHBDD1 Silent p.L203L 0.27 TCGA-IB-7651-01 2 227945157 227945157 A G COL4A4 Splice_Site p.X601_splice 0.15 TCGA-IB-7651-01 2 227963476 227963476 C A COL4A4 Nonsense_Mutation p.E380* 0.07 TCGA-IB-7651-01 2 227966227 227966227 C A COL4A4 Missense_Mutation p.G341V 0.13 probably_damaging(0.999) TCGA-IB-7651-01 2 228004944 228004944 T G COL4A4 Missense_Mutation p.K42T 0.08 probably_damaging(0.92) TCGA-IB-7651-01 2 228145242 228145242 T C COL4A3 Silent p.I770I 0.26 TCGA-IB-7651-01 2 228158022 228158022 C T COL4A3 Missense_Mutation p.P1109L 0.23 unknown(0) TCGA-IB-7651-01 2 228195439 228195439 C T MFF Nonsense_Mutation p.R46* 0.25 TCGA-IB-7651-01 2 228197205 228197205 C T MFF Silent p.P110P 0.24 TCGA-IB-7651-01 2 228205077 228205077 C T MFF Silent p.L167L 0.24 TCGA-IB-7651-01 2 228230946 228230946 T G TM4SF20 Silent p.S88S 0.27 TCGA-IB-7651-01 2 228401620 228401620 C T AGFG1 Missense_Mutation p.T454M 0.15 tolerated(0.22) benign(0.386) TCGA-IB-7651-01 2 228750117 228750117 G T DAW1 Missense_Mutation p.D31Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 2 228758521 228758521 G T DAW1 Nonsense_Mutation p.G110* 0.23 TCGA-IB-7651-01 2 228846450 228846450 G T SPHKAP Missense_Mutation p.L1696I 0.18 deleterious(0.02) probably_damaging(0.98) TCGA-IB-7651-01 2 228881170 228881170 T A SPHKAP Missense_Mutation p.D1467V 0.27 tolerated(0.07) benign(0.066) TCGA-IB-7651-01 2 228881439 228881439 G A SPHKAP Silent p.T1377T 0.16 TCGA-IB-7651-01 2 228881731 228881731 G A SPHKAP Missense_Mutation p.A1280V 0.08 tolerated(1) benign(0.001) TCGA-IB-7651-01 2 228882946 228882946 G A SPHKAP Missense_Mutation p.A875V 0.17 tolerated(0.13) benign(0.019) TCGA-IB-7651-01 2 228884503 228884503 G A SPHKAP Missense_Mutation p.A356V 0.29 tolerated(0.55) benign(0.008) TCGA-IB-7651-01 2 228996712 228996712 A G SPHKAP Missense_Mutation p.I41T 0.13 deleterious(0) possibly_damaging(0.703) TCGA-IB-7651-01 2 230231694 230231694 C T DNER Missense_Mutation p.R666H 0.09 deleterious(0) probably_damaging(0.939) TCGA-IB-7651-01 2 230636293 230636293 C A TRIP12 Missense_Mutation p.R1842I 0.19 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 2 230667001 230667001 C A TRIP12 Missense_Mutation p.S983I 0.28 deleterious(0.01) benign(0.188) TCGA-IB-7651-01 2 230787204 230787204 C T FBXO36 5'Flank 0.09 TCGA-IB-7651-01 2 230875544 230875544 C T FBXO36 Missense_Mutation p.R171W 0.09 tolerated(0.09) possibly_damaging(0.454) TCGA-IB-7651-01 2 230911293 230911293 G A SLC16A14 Silent p.C183C 0.16 TCGA-IB-7651-01 2 231077540 231077540 C T SP110 Silent p.S173S 0.16 TCGA-IB-7651-01 2 231174738 231174738 C T SP140 Missense_Mutation p.P720S 0.08 deleterious(0.05) probably_damaging(0.975) TCGA-IB-7651-01 2 231235641 231235641 C T SP140L Missense_Mutation p.P181L 0.18 tolerated(0.19) benign(0.054) TCGA-IB-7651-01 2 231264881 231264881 G A SP140L Missense_Mutation p.G413R 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 231264950 231264950 A G SP140L Missense_Mutation p.S436G 0.19 deleterious(0.01) benign(0.023) TCGA-IB-7651-01 2 231265070 231265070 C T SP140L Intron 0.19 TCGA-IB-7651-01 2 231265746 231265746 C A SP140L Missense_Mutation p.L464M 0.12 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 231308927 231308927 T C SP100 Missense_Mutation p.V102A 0.17 deleterious(0) benign(0.294) TCGA-IB-7651-01 2 231379934 231379934 C T SP100 Intron 0.16 TCGA-IB-7651-01 2 231406637 231406637 C T SP100 Missense_Mutation p.P812S 0.17 tolerated(0.09) possibly_damaging(0.803) TCGA-IB-7651-01 2 231407688 231407688 C A SP100 3'UTR 0.28 TCGA-IB-7651-01 2 231657983 231657983 C T CAB39 Missense_Mutation p.T112M 0.07 deleterious(0.04) possibly_damaging(0.708) TCGA-IB-7651-01 2 231742882 231742882 C A ITM2C 3'UTR 0.31 TCGA-IB-7651-01 2 231927223 231927223 G A PSMD1 Silent p.E46E 0.15 TCGA-IB-7651-01 2 231927275 231927275 G A PSMD1 Missense_Mutation p.A64T 0.25 deleterious(0.03) possibly_damaging(0.53) TCGA-IB-7651-01 2 231974067 231974067 T G HTR2B Missense_Mutation p.N204H 0.26 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 2 232011056 232011056 A C PSMD1 Missense_Mutation p.I701L 0.23 tolerated(0.07) benign(0.002) TCGA-IB-7651-01 2 232030716 232030716 C T PSMD1 Silent p.Y900Y 0.07 TCGA-IB-7651-01 2 232263043 232263043 C T B3GNT7 Nonsense_Mutation p.Q205* 0.28 TCGA-IB-7651-01 2 232373827 232373827 G T LINC00471 RNA 0.18 TCGA-IB-7651-01 2 232458282 232458282 C A C2orf57 Missense_Mutation p.A207D 0.32 deleterious(0.03) probably_damaging(0.958) TCGA-IB-7651-01 2 232573365 232573365 A C PTMA 5'UTR 0.19 TCGA-IB-7651-01 2 233243361 233243361 C T ALPP 5'UTR 0.26 TCGA-IB-7651-01 2 233244473 233244473 G T ALPP Splice_Site p.X162_splice 0.24 TCGA-IB-7651-01 2 233244614 233244614 G A ALPP Missense_Mutation p.A209T 0.04 deleterious(0.01) probably_damaging(0.978) TCGA-IB-7651-01 2 233244978 233244978 G A ALPP Missense_Mutation p.G247E 0.10 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 233274394 233274394 G A ALPPL2 Missense_Mutation p.V471M 0.20 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 2 233274417 233274417 G A ALPPL2 Silent p.A478A 0.23 TCGA-IB-7651-01 2 233274433 233274433 G A ALPPL2 Missense_Mutation p.A484T 0.27 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 2 233321075 233321075 G A ALPI Silent p.P28P 0.15 TCGA-IB-7651-01 2 233321314 233321314 C T ALPI Missense_Mutation p.A70V 0.16 deleterious(0) possibly_damaging(0.901) TCGA-IB-7651-01 2 233321938 233321938 G A ALPI Missense_Mutation p.R185H 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 233346332 233346332 A G ECEL1 Missense_Mutation p.Y625H 0.19 deleterious(0) probably_damaging(0.929) TCGA-IB-7651-01 2 233346501 233346501 C T ECEL1 Missense_Mutation p.D619N 0.23 deleterious(0) possibly_damaging(0.495) TCGA-IB-7651-01 2 233394759 233394759 C T CHRND Missense_Mutation p.R244C 0.19 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 2 233635952 233635952 G A KCNJ13 Missense_Mutation p.L41F 0.25 tolerated(0.09) probably_damaging(0.991) TCGA-IB-7651-01 2 234085994 234085994 T C INPP5D Splice_Site p.X679_splice 0.24 TCGA-IB-7651-01 2 234299129 234299129 G A DGKD Silent p.T116T 0.26 TCGA-IB-7651-01 2 234343475 234343475 G A DGKD Missense_Mutation p.A172T 0.27 tolerated(0.05) possibly_damaging(0.595) TCGA-IB-7651-01 2 234407224 234407224 G T USP40 Nonsense_Mutation p.C906* 0.24 TCGA-IB-7651-01 2 234436099 234436099 A C USP40 Missense_Mutation p.F571C 0.25 deleterious(0) probably_damaging(0.917) TCGA-IB-7651-01 2 234526311 234526311 G A UGT1A8 5'UTR 0.26 TCGA-IB-7651-01 2 234526586 234526586 C T UGT1A8 Missense_Mutation p.S78L 0.18 deleterious(0.02) benign(0.013) TCGA-IB-7651-01 2 234627942 234627942 C T UGT1A4 Missense_Mutation p.A159V 0.24 tolerated(0.46) benign(0.02) TCGA-IB-7651-01 2 234681249 234681249 T C UGT1A4 3'UTR 0.31 TCGA-IB-7651-01 2 234891813 234891813 G A TRPM8 Silent p.S902S 0.04 TCGA-IB-7651-01 2 235404503 235404503 C T ARL4C 3'UTR 0.16 TCGA-IB-7651-01 2 235404671 235404671 T G ARL4C Missense_Mutation p.K187T 0.17 deleterious(0) unknown(0) TCGA-IB-7651-01 2 235961352 235961352 C T SH3BP4 Silent p.Y875Y 0.12 TCGA-IB-7651-01 2 236626223 236626223 G T AGAP1 Missense_Mutation p.S82I 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 236945321 236945321 C A AGAP1 Missense_Mutation p.L588M 0.08 deleterious(0) possibly_damaging(0.786) TCGA-IB-7651-01 2 237074436 237074436 C A GBX2 3'UTR 0.11 TCGA-IB-7651-01 2 237076102 237076102 C A GBX2 Missense_Mutation p.Q171H 0.17 tolerated(0.16) benign(0.001) TCGA-IB-7651-01 2 237076320 237076320 C T GBX2 Missense_Mutation p.A99T 0.16 tolerated(0.19) benign(0.398) TCGA-IB-7651-01 2 237272537 237272537 G T IQCA1 Silent p.V585V 0.26 TCGA-IB-7651-01 2 237489978 237489978 G A ACKR3 Silent p.E290E 0.32 TCGA-IB-7651-01 2 237998518 237998518 T C COPS8 Missense_Mutation p.L71P 0.15 deleterious(0) probably_damaging(0.974) TCGA-IB-7651-01 2 238245116 238245116 G A COL6A3 Missense_Mutation p.P2876L 0.17 unknown(0) TCGA-IB-7651-01 2 238249523 238249523 C T COL6A3 Missense_Mutation p.S2679N 0.18 unknown(0) TCGA-IB-7651-01 2 238253142 238253142 G T COL6A3 Missense_Mutation p.L2507I 0.26 unknown(0) TCGA-IB-7651-01 2 238283139 238283139 G C COL6A3 Missense_Mutation p.Q1199E 0.24 possibly_damaging(0.777) TCGA-IB-7651-01 2 238285711 238285711 C T COL6A3 Missense_Mutation p.R925K 0.18 benign(0.123) TCGA-IB-7651-01 2 238449001 238449001 C A MLPH Missense_Mutation p.A372D 0.29 tolerated(0.07) possibly_damaging(0.536) TCGA-IB-7651-01 2 238632193 238632193 G A LRRFIP1 Intron 0.15 TCGA-IB-7651-01 2 238688109 238688109 C T LRRFIP1 Silent p.N619N 0.28 TCGA-IB-7651-01 2 238726960 238726960 G A RBM44 Silent p.Q467Q 0.25 TCGA-IB-7651-01 2 238990418 238990418 C T SCLY Missense_Mutation p.R193C 0.17 tolerated(0.07) benign(0.059) TCGA-IB-7651-01 2 238990750 238990750 C A SCLY Missense_Mutation p.P234H 0.17 deleterious(0.03) benign(0.222) TCGA-IB-7651-01 2 238999969 238999969 C T SCLY Intron 0.19 TCGA-IB-7651-01 2 239009107 239009107 C T ESPNL Missense_Mutation p.A16V 0.12 deleterious(0.02) possibly_damaging(0.821) TCGA-IB-7651-01 2 239016582 239016582 C T ESPNL Missense_Mutation p.L275F 0.23 tolerated(0.09) probably_damaging(0.999) TCGA-IB-7651-01 2 239040166 239040166 G T ESPNL Silent p.T937T 0.18 TCGA-IB-7651-01 2 239049856 239049856 C A KLHL30 Missense_Mutation p.A154D 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 239054470 239054470 G A KLHL30 Missense_Mutation p.G383S 0.32 deleterious(0.03) probably_damaging(0.983) TCGA-IB-7651-01 2 239056536 239056536 C T KLHL30 Silent p.P404P 0.14 TCGA-IB-7651-01 2 239059487 239059487 C T KLHL30 Silent p.G506G 0.33 TCGA-IB-7651-01 2 239079141 239079141 T A ILKAP 3'UTR 0.07 TCGA-IB-7651-01 2 239140557 239140557 C T AC016757.3 5'Flank 0.17 TCGA-IB-7651-01 2 239147804 239147804 C T HES6 Silent p.T113T 0.09 TCGA-IB-7651-01 2 239161789 239161789 G T PER2 Missense_Mutation p.P959T 0.24 deleterious(0.04) benign(0.169) TCGA-IB-7651-01 2 239161903 239161903 G A PER2 Missense_Mutation p.P921S 0.16 tolerated(0.11) benign(0.068) TCGA-IB-7651-01 2 239180010 239180010 A G PER2 Missense_Mutation p.F239L 0.21 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 2 239234548 239234548 G A TRAF3IP1 Silent p.A97A 0.26 TCGA-IB-7651-01 2 239306131 239306131 A C TRAF3IP1 Missense_Mutation p.K574T 0.23 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 2 239306183 239306183 G T TRAF3IP1 Missense_Mutation p.Q591H 0.21 deleterious(0.02) probably_damaging(1) TCGA-IB-7651-01 2 23977640 23977640 A C ATAD2B Silent p.A1361A 0.25 TCGA-IB-7651-01 2 240029793 240029793 T C HDAC4 Missense_Mutation p.S684G 0.24 deleterious(0) possibly_damaging(0.905) TCGA-IB-7651-01 2 240048328 240048328 G A HDAC4 Missense_Mutation p.R448W 0.26 deleterious(0) probably_damaging(0.918) TCGA-IB-7651-01 2 24033200 24033200 C A ATAD2B Nonsense_Mutation p.E814* 0.13 TCGA-IB-7651-01 2 240900483 240900483 C A NDUFA10 3'UTR 0.20 TCGA-IB-7651-01 2 240921628 240921628 G T NDUFA10 Intron 0.20 TCGA-IB-7651-01 2 240929543 240929543 T A NDUFA10 Missense_Mutation p.E316V 0.27 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 2 240960761 240960761 C T NDUFA10 Missense_Mutation p.A105T 0.26 deleterious(0.03) benign(0.002) TCGA-IB-7651-01 2 240969775 240969775 C T OR6B2 Silent p.Q24Q 0.28 TCGA-IB-7651-01 2 241073376 241073376 T G MYEOV2 Missense_Mutation p.K68T 0.15 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-IB-7651-01 2 241468599 241468599 G A ANKMY1 Missense_Mutation p.P181S 0.21 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 2 241517075 241517075 C A RNPEPL1 Silent p.S417S 0.27 TCGA-IB-7651-01 2 241556511 241556511 C T GPR35 Intron 0.16 TCGA-IB-7651-01 2 241656817 241656817 C A KIF1A Missense_Mutation p.K1780N 0.21 deleterious(0.03) possibly_damaging(0.571) TCGA-IB-7651-01 2 241666339 241666339 C A KIF1A Missense_Mutation p.E1342D 0.23 deleterious(0.01) benign(0.168) TCGA-IB-7651-01 2 241697877 241697877 C T KIF1A Missense_Mutation p.A828T 0.10 tolerated(0.05) probably_damaging(0.973) TCGA-IB-7651-01 2 241709069 241709069 G A KIF1A Missense_Mutation p.R466W 0.18 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 2 241808766 241808766 C T AGXT Silent p.I115I 0.15 TCGA-IB-7651-01 2 241829557 241829557 C T C2orf54 Silent p.L253L 0.15 TCGA-IB-7651-01 2 24194191 24194191 A G UBXN2A Silent p.Q29Q 0.28 TCGA-IB-7651-01 2 241988103 241988103 G A SNED1 Missense_Mutation p.R475H 0.26 deleterious(0.04) benign(0.429) TCGA-IB-7651-01 2 242051830 242051830 G A PASK Missense_Mutation p.R1127C 0.25 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 2 242062165 242062165 G A PASK Silent p.D1018D 0.08 TCGA-IB-7651-01 2 242079416 242079416 G A PASK Silent p.L162L 0.18 TCGA-IB-7651-01 2 242080137 242080137 T C PASK Silent p.S76S 0.19 TCGA-IB-7651-01 2 242149899 242149899 G A ANO7 Missense_Mutation p.S546N 0.17 tolerated(0.46) benign(0.139) TCGA-IB-7651-01 2 242155543 242155543 G A ANO7 Missense_Mutation p.R675H 0.18 tolerated(0.18) benign(0.009) TCGA-IB-7651-01 2 242189280 242189280 C A HDLBP Missense_Mutation p.E496D 0.27 deleterious(0.03) benign(0.35) TCGA-IB-7651-01 2 242192398 242192398 T C HDLBP Missense_Mutation p.H449R 0.26 deleterious(0) probably_damaging(0.968) TCGA-IB-7651-01 2 242282453 242282453 C A SEPT2 Missense_Mutation p.P214H 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 24236237 24236237 C A MFSD2B Missense_Mutation p.A60D 0.24 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 24239035 24239035 G A MFSD2B Missense_Mutation p.A78T 0.13 tolerated(0.07) possibly_damaging(0.523) TCGA-IB-7651-01 2 24239769 24239770 - C MFSD2B Frame_Shift_Ins p.F137Lfs*263 0.13 TCGA-IB-7651-01 2 24239805 24239805 G A MFSD2B Silent p.T146T 0.15 TCGA-IB-7651-01 2 242415374 242415374 G A FARP2 Missense_Mutation p.G745D 0.14 deleterious(0.03) probably_damaging(1) TCGA-IB-7651-01 2 242438508 242438508 C T STK25 Missense_Mutation p.V223I 0.23 deleterious(0) probably_damaging(0.935) TCGA-IB-7651-01 2 242441007 242441007 C T STK25 Silent p.K49K 0.19 TCGA-IB-7651-01 2 242572459 242572459 G A THAP4 Silent p.G371G 0.20 TCGA-IB-7651-01 2 242572744 242572744 G A THAP4 Silent p.P276P 0.26 TCGA-IB-7651-01 2 242573285 242573285 C T THAP4 Missense_Mutation p.G96D 0.28 tolerated_low_confidence(0.23) possibly_damaging(0.554) TCGA-IB-7651-01 2 24261218 24261218 C A C2orf44 Nonsense_Mutation p.E383* 0.18 TCGA-IB-7651-01 2 242648728 242648728 G T ING5 Missense_Mutation p.Q69H 0.27 deleterious(0.01) probably_damaging(0.938) TCGA-IB-7651-01 2 242650891 242650891 C T ING5 Nonsense_Mutation p.R126* 0.21 TCGA-IB-7651-01 2 242664503 242664503 G A ING5 3'UTR 0.18 TCGA-IB-7651-01 2 242681954 242681954 G A D2HGDH Missense_Mutation p.R152H 0.17 tolerated(0.43) benign(0.023) TCGA-IB-7651-01 2 242695421 242695421 G A D2HGDH Missense_Mutation p.G433D 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 242755732 242755732 G T NEU4 Missense_Mutation p.R30S 0.21 tolerated(0.78) benign(0.122) TCGA-IB-7651-01 2 242794943 242794943 G A PDCD1 Missense_Mutation p.P89L 0.14 deleterious(0) possibly_damaging(0.804) TCGA-IB-7651-01 2 242814506 242814506 G T CXXC11 Missense_Mutation p.D267Y 0.27 tolerated(0.09) possibly_damaging(0.867) TCGA-IB-7651-01 2 242815311 242815311 G T CXXC11 Missense_Mutation p.R535M 0.25 deleterious(0.05) probably_damaging(0.993) TCGA-IB-7651-01 2 24300349 24300349 G A TP53I3 3'UTR 0.31 TCGA-IB-7651-01 2 24413339 24413339 G A FAM228A Missense_Mutation p.D154N 0.20 tolerated(0.12) possibly_damaging(0.677) TCGA-IB-7651-01 2 24471562 24471562 G A ITSN2 Missense_Mutation p.A1075V 0.11 deleterious(0.01) unknown(0) TCGA-IB-7651-01 2 24484038 24484038 C T ITSN2 Nonsense_Mutation p.W873* 0.13 TCGA-IB-7651-01 2 24533163 24533163 C A ITSN2 Nonsense_Mutation p.G215* 0.14 TCGA-IB-7651-01 2 24905930 24905930 C T NCOA1 Silent p.S155S 0.14 TCGA-IB-7651-01 2 24952420 24952420 G A NCOA1 Silent p.T979T 0.27 TCGA-IB-7651-01 2 24991146 24991146 C T NCOA1 Silent p.G1404G 0.15 TCGA-IB-7651-01 2 25042948 25042948 G A ADCY3 Silent p.Y1096Y 0.14 TCGA-IB-7651-01 2 25042959 25042959 G T ADCY3 Missense_Mutation p.L1093I 0.23 deleterious(0.02) possibly_damaging(0.774) TCGA-IB-7651-01 2 25046192 25046192 T C ADCY3 Silent p.G923G 0.08 TCGA-IB-7651-01 2 25050811 25050811 C T ADCY3 Missense_Mutation p.V798I 0.22 tolerated(1) benign(0) TCGA-IB-7651-01 2 25095498 25095498 G T ADCY3 Missense_Mutation p.L256M 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 25141381 25141381 A G ADCY3 Missense_Mutation p.F159S 0.26 tolerated(0.12) benign(0.412) TCGA-IB-7651-01 2 25141705 25141705 C T ADCY3 Missense_Mutation p.R51H 0.06 tolerated(0.08) possibly_damaging(0.483) TCGA-IB-7651-01 2 25170411 25170411 C A DNAJC27 3'UTR 0.19 TCGA-IB-7651-01 2 25384073 25384073 G T POMC Silent p.R227R 0.13 TCGA-IB-7651-01 2 25462038 25462038 C A DNMT3A Missense_Mutation p.R790M 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 25467030 25467030 C A DNMT3A Missense_Mutation p.Q615H 0.31 tolerated(0.09) probably_damaging(0.969) TCGA-IB-7651-01 2 25469575 25469575 G A DNMT3A Missense_Mutation p.A398V 0.07 tolerated(0.15) benign(0.001) TCGA-IB-7651-01 2 25861906 25861906 C T DTNB Missense_Mutation p.R42Q 0.12 deleterious(0.03) possibly_damaging(0.77) TCGA-IB-7651-01 2 25965233 25965233 G A ASXL2 Missense_Mutation p.P1325S 0.16 tolerated(0.18) benign(0.117) TCGA-IB-7651-01 2 25973170 25973170 G A ASXL2 Missense_Mutation p.L419F 0.18 tolerated(0.21) benign(0.285) TCGA-IB-7651-01 2 26203981 26203981 G A KIF3C Missense_Mutation p.S269L 0.15 benign(0) TCGA-IB-7651-01 2 26437387 26437387 C A HADHA Missense_Mutation p.Q281H 0.28 tolerated(0.53) possibly_damaging(0.824) TCGA-IB-7651-01 2 26501526 26501526 G A HADHB Missense_Mutation p.G163S 0.11 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 26501669 26501669 G T HADHB Missense_Mutation p.E210D 0.17 tolerated(0.15) probably_damaging(0.981) TCGA-IB-7651-01 2 26698861 26698861 C A OTOF Missense_Mutation p.S971I 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 2 26705280 26705280 C T OTOF Missense_Mutation p.D525N 0.23 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 26724644 26724644 G A OTOF Missense_Mutation p.A248V 0.14 tolerated(0.16) possibly_damaging(0.818) TCGA-IB-7651-01 2 26916011 26916011 G A KCNK3 Missense_Mutation p.V90I 0.32 deleterious(0.01) possibly_damaging(0.883) TCGA-IB-7651-01 2 26950699 26950699 C T KCNK3 Missense_Mutation p.R150W 0.17 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 2 26950898 26950898 C T KCNK3 Missense_Mutation p.T216M 0.16 deleterious(0.01) possibly_damaging(0.87) TCGA-IB-7651-01 2 26951010 26951010 C T KCNK3 Silent p.D253D 0.39 TCGA-IB-7651-01 2 26951339 26951339 G A KCNK3 Missense_Mutation p.C363Y 0.25 tolerated_low_confidence(0.38) probably_damaging(0.996) TCGA-IB-7651-01 2 26999265 26999265 G T SLC35F6 Missense_Mutation p.Q187H 0.24 deleterious(0) probably_damaging(0.926) TCGA-IB-7651-01 2 27000925 27000925 T G SLC35F6 Missense_Mutation p.V221G 0.24 tolerated(0.12) benign(0.34) TCGA-IB-7651-01 2 27154526 27154526 C T DPYSL5 Missense_Mutation p.H230Y 0.24 tolerated(1) probably_damaging(0.992) TCGA-IB-7651-01 2 27258519 27258519 C T TMEM214 Missense_Mutation p.A187V 0.08 tolerated(0.12) possibly_damaging(0.499) TCGA-IB-7651-01 2 27262629 27262629 C A TMEM214 Missense_Mutation p.L516I 0.26 deleterious(0) possibly_damaging(0.896) TCGA-IB-7651-01 2 27263359 27263359 A G TMEM214 Silent p.A646A 0.26 TCGA-IB-7651-01 2 27263721 27263721 C T TMEM214 3'UTR 0.11 TCGA-IB-7651-01 2 27282095 27282095 C T AGBL5 Missense_Mutation p.R638W 0.18 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-IB-7651-01 2 27321993 27321993 G A CGREF1 3'Flank 0.32 TCGA-IB-7651-01 2 27321998 27321998 C T CGREF1 3'Flank 0.33 TCGA-IB-7651-01 2 27352776 27352776 C T ABHD1 Missense_Mutation p.L258F 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 2 27430624 27430624 G A SLC5A6 5'UTR 0.09 TCGA-IB-7651-01 2 27447894 27447894 G A CAD Missense_Mutation p.R468H 0.16 deleterious(0.04) probably_damaging(0.991) TCGA-IB-7651-01 2 27449826 27449826 C T CAD Silent p.S761S 0.14 TCGA-IB-7651-01 2 27454442 27454442 C T CAD Silent p.S798S 0.17 TCGA-IB-7651-01 2 27456554 27456554 C A CAD Missense_Mutation p.L1093M 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 27464907 27464907 C T CAD Silent p.G2004G 0.25 TCGA-IB-7651-01 2 27479733 27479733 C A SLC30A3 Missense_Mutation p.S269I 0.29 deleterious(0) benign(0.27) TCGA-IB-7651-01 2 27480182 27480182 C T SLC30A3 Missense_Mutation p.S206N 0.12 tolerated(0.26) possibly_damaging(0.627) TCGA-IB-7651-01 2 27500629 27500629 G A DNAJC5G Missense_Mutation p.A41T 0.27 tolerated_low_confidence(0.53) benign(0) TCGA-IB-7651-01 2 27528685 27528685 G T TRIM54 Missense_Mutation p.Q323H 0.12 deleterious(0.02) probably_damaging(0.986) TCGA-IB-7651-01 2 27549541 27549541 G T GTF3C2 3'UTR 0.09 TCGA-IB-7651-01 2 27551397 27551397 C T GTF3C2 Missense_Mutation p.A732T 0.26 deleterious(0.01) benign(0.093) TCGA-IB-7651-01 2 27565074 27565074 G A GTF3C2 Missense_Mutation p.A199V 0.29 tolerated(0.06) probably_damaging(0.996) TCGA-IB-7651-01 2 27587222 27587222 C A EIF2B4 3'Flank 0.30 TCGA-IB-7651-01 2 27598482 27598482 G A SNX17 Missense_Mutation p.S295N 0.16 tolerated(0.48) benign(0.001) TCGA-IB-7651-01 2 27605361 27605361 A T PPM1G Missense_Mutation p.I438N 0.27 deleterious(0) probably_damaging(0.949) TCGA-IB-7651-01 2 27659651 27659651 G A NRBP1 Silent p.K231K 0.25 TCGA-IB-7651-01 2 27664444 27664444 C T NRBP1 Silent p.I486I 0.24 TCGA-IB-7651-01 2 27670790 27670790 C A IFT172 Splice_Site p.X1477_splice 0.23 TCGA-IB-7651-01 2 27677000 27677000 G T IFT172 Missense_Mutation p.A1187D 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 27680845 27680845 T C IFT172 Splice_Site p.X992_splice 0.25 TCGA-IB-7651-01 2 27684682 27684682 C T IFT172 Missense_Mutation p.G713S 0.22 tolerated(0.18) benign(0.003) TCGA-IB-7651-01 2 27728602 27728602 C T GCKR Silent p.G256G 0.09 TCGA-IB-7651-01 2 27729396 27729396 C A GCKR Silent p.T306T 0.17 TCGA-IB-7651-01 2 27730853 27730853 C G GCKR Missense_Mutation p.T417R 0.15 tolerated(0.53) benign(0.219) TCGA-IB-7651-01 2 277325 277325 C T ACP1 3'UTR 0.07 TCGA-IB-7651-01 2 27801528 27801528 G A C2orf16 Missense_Mutation p.V697I 0.13 tolerated(0.32) benign(0.301) TCGA-IB-7651-01 2 27801881 27801881 G T C2orf16 Missense_Mutation p.E814D 0.04 tolerated(0.05) possibly_damaging(0.637) TCGA-IB-7651-01 2 27802900 27802900 G A C2orf16 Missense_Mutation p.R1154H 0.28 deleterious(0.01) benign(0.03) TCGA-IB-7651-01 2 27803149 27803149 G A C2orf16 Missense_Mutation p.R1237H 0.18 tolerated(0.51) benign(0.104) TCGA-IB-7651-01 2 27803687 27803687 G A C2orf16 Silent p.T1416T 0.08 TCGA-IB-7651-01 2 27804403 27804403 G A C2orf16 Missense_Mutation p.R1655H 0.26 tolerated(0.36) benign(0.004) TCGA-IB-7651-01 2 27858050 27858050 C T GPN1 Missense_Mutation p.S172L 0.16 deleterious(0.01) possibly_damaging(0.523) TCGA-IB-7651-01 2 27876219 27876219 C T SUPT7L 3'UTR 0.09 TCGA-IB-7651-01 2 27884372 27884372 C T SUPT7L Intron 0.31 TCGA-IB-7651-01 2 27886811 27886811 C A SLC4A1AP Silent p.T64T 0.14 TCGA-IB-7651-01 2 28050516 28050516 G A RBKS Missense_Mutation p.A238V 0.25 tolerated(0.06) benign(0.004) TCGA-IB-7651-01 2 28081321 28081321 C T RBKS Silent p.T69T 0.07 TCGA-IB-7651-01 2 28635000 28635000 A T FOSL2 Missense_Mutation p.K222N 0.15 deleterious(0.02) benign(0.052) TCGA-IB-7651-01 2 29004680 29004680 G T PPP1CB Silent p.V164V 0.19 TCGA-IB-7651-01 2 29063347 29063347 T C SPDYA Intron 0.23 TCGA-IB-7651-01 2 29092543 29092543 G T TRMT61B Missense_Mutation p.L201M 0.15 deleterious(0.04) possibly_damaging(0.891) TCGA-IB-7651-01 2 29092664 29092664 C A TRMT61B Missense_Mutation p.E160D 0.17 deleterious(0) benign(0.407) TCGA-IB-7651-01 2 29093040 29093040 G T TRMT61B Missense_Mutation p.A35D 0.26 deleterious_low_confidence(0) benign(0.386) TCGA-IB-7651-01 2 29135533 29135533 G A WDR43 Missense_Mutation p.R188Q 0.27 tolerated(0.07) possibly_damaging(0.786) TCGA-IB-7651-01 2 29152515 29152515 C T WDR43 Missense_Mutation p.T459M 0.28 deleterious(0) benign(0.1) TCGA-IB-7651-01 2 29258407 29258407 G A FAM179A Missense_Mutation p.R768Q 0.24 tolerated(0.07) benign(0.085) TCGA-IB-7651-01 2 29259479 29259479 G A FAM179A Missense_Mutation p.A831T 0.27 tolerated(0.15) benign(0.023) TCGA-IB-7651-01 2 29293566 29293566 G T C2orf71 Missense_Mutation p.P1188T 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 29397296 29397296 G T CLIP4 Missense_Mutation p.R594I 0.12 deleterious(0.02) possibly_damaging(0.707) TCGA-IB-7651-01 2 30142927 30142927 C T ALK Missense_Mutation p.R200K 0.29 tolerated_low_confidence(0.25) benign(0.182) TCGA-IB-7651-01 2 30480460 30480460 G T LBH Missense_Mutation p.E97D 0.14 tolerated_low_confidence(0.12) benign(0.001) TCGA-IB-7651-01 2 30756073 30756073 G A LCLAT1 Missense_Mutation p.R124Q 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 31010077 31010077 T G CAPN13 Missense_Mutation p.T39P 0.20 deleterious(0) probably_damaging(0.979) TCGA-IB-7651-01 2 31457609 31457609 G A EHD3 Missense_Mutation p.R41H 0.26 tolerated(0.14) benign(0.003) TCGA-IB-7651-01 2 31467303 31467303 G A EHD3 Missense_Mutation p.A131T 0.28 tolerated(0.29) benign(0.013) TCGA-IB-7651-01 2 31483495 31483495 A C EHD3 Missense_Mutation p.K208Q 0.26 tolerated(0.06) benign(0.14) TCGA-IB-7651-01 2 31483688 31483688 A C EHD3 Missense_Mutation p.E272A 0.07 deleterious(0.02) benign(0.285) TCGA-IB-7651-01 2 31484505 31484505 G A EHD3 Missense_Mutation p.A336T 0.23 tolerated(0.33) benign(0.004) TCGA-IB-7651-01 2 31489251 31489251 C T EHD3 Missense_Mutation p.A430V 0.09 tolerated(0.56) benign(0.002) TCGA-IB-7651-01 2 31560588 31560588 G A XDH Silent p.N1290N 0.24 TCGA-IB-7651-01 2 31570487 31570487 G A XDH Silent p.T1059T 0.24 TCGA-IB-7651-01 2 31571782 31571782 C T XDH Missense_Mutation p.V1012I 0.26 tolerated(0.34) benign(0.001) TCGA-IB-7651-01 2 31573079 31573079 C T XDH Missense_Mutation p.R881Q 0.18 tolerated(0.23) benign(0.269) TCGA-IB-7651-01 2 31588402 31588402 C T XDH Missense_Mutation p.R822H 0.17 tolerated(0.15) benign(0.029) TCGA-IB-7651-01 2 31593326 31593326 T G XDH Missense_Mutation p.E625D 0.20 tolerated(0.11) benign(0.018) TCGA-IB-7651-01 2 31624144 31624144 A G XDH Missense_Mutation p.V83A 0.05 tolerated(1) benign(0.005) TCGA-IB-7651-01 2 31805971 31805971 G A SRD5A2 RNA 0.26 TCGA-IB-7651-01 2 31806019 31806019 G A SRD5A2 RNA 0.23 TCGA-IB-7651-01 2 32475213 32475213 C A NLRC4 Nonsense_Mutation p.E574* 0.14 TCGA-IB-7651-01 2 32476155 32476155 C A NLRC4 Nonsense_Mutation p.E260* 0.07 TCGA-IB-7651-01 2 3261074 3261074 C A TSSC1 Missense_Mutation p.A138S 0.19 tolerated(0.41) probably_damaging(0.935) TCGA-IB-7651-01 2 32673919 32673919 G T BIRC6 Missense_Mutation p.G1514V 0.05 possibly_damaging(0.726) TCGA-IB-7651-01 2 32673997 32673997 G A BIRC6 Splice_Site p.X1540_splice 0.25 TCGA-IB-7651-01 2 32702455 32702455 G A BIRC6 Missense_Mutation p.R2291H 0.25 probably_damaging(0.991) TCGA-IB-7651-01 2 32740700 32740700 G A BIRC6 Missense_Mutation p.A3738T 0.13 benign(0.002) TCGA-IB-7651-01 2 33036232 33036232 C T TTC27 Silent p.L714L 0.17 TCGA-IB-7651-01 2 33783327 33783327 C A RASGRP3 Silent p.A543A 0.19 TCGA-IB-7651-01 2 33952457 33952457 C T AC009499.1 Intron 0.16 TCGA-IB-7651-01 2 3483328 3483328 C T TRAPPC12 3'UTR 0.19 TCGA-IB-7651-01 2 3660908 3660908 G A COLEC11 Silent p.A60A 0.18 TCGA-IB-7651-01 2 36691752 36691752 C T CRIM1 Silent p.G315G 0.16 TCGA-IB-7651-01 2 36704168 36704168 C T CRIM1 Silent p.C376C 0.27 TCGA-IB-7651-01 2 36771593 36771593 C T CRIM1 Missense_Mutation p.P900S 0.18 deleterious(0.02) benign(0.188) TCGA-IB-7651-01 2 3691463 3691463 G A COLEC11 Missense_Mutation p.A205T 0.22 tolerated(0.36) benign(0.016) TCGA-IB-7651-01 2 36982186 36982186 T G VIT Missense_Mutation p.F133C 0.17 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 2 36994315 36994315 C A VIT Missense_Mutation p.A189D 0.19 tolerated_low_confidence(0.1) benign(0.025) TCGA-IB-7651-01 2 37035781 37035781 G T VIT Missense_Mutation p.S519I 0.24 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 37082439 37082439 C T STRN Missense_Mutation p.A632T 0.17 tolerated(0.47) benign(0.034) TCGA-IB-7651-01 2 37208886 37208886 T C HEATR5B Missense_Mutation p.D1988G 0.26 deleterious(0) possibly_damaging(0.682) TCGA-IB-7651-01 2 37215952 37215952 A G HEATR5B Silent p.N1916N 0.21 TCGA-IB-7651-01 2 37232786 37232786 C T HEATR5B Missense_Mutation p.A1632T 0.16 tolerated(0.25) benign(0.015) TCGA-IB-7651-01 2 37268381 37268381 A G HEATR5B Silent p.G917G 0.24 TCGA-IB-7651-01 2 3727504 3727504 G A ALLC Missense_Mutation p.R73Q 0.22 tolerated(0.16) benign(0.148) TCGA-IB-7651-01 2 37283632 37283632 A C HEATR5B Missense_Mutation p.S784A 0.25 tolerated(1) benign(0.002) TCGA-IB-7651-01 2 37286131 37286131 C T HEATR5B Splice_Site p.X617_splice 0.12 TCGA-IB-7651-01 2 37296066 37296066 A G HEATR5B Missense_Mutation p.V312A 0.27 deleterious(0) possibly_damaging(0.835) TCGA-IB-7651-01 2 37365484 37365484 C A EIF2AK2 Missense_Mutation p.G206C 0.16 deleterious(0.04) benign(0.345) TCGA-IB-7651-01 2 37410602 37410602 T G SULT6B1 Missense_Mutation p.K85T 0.30 tolerated(0.39) benign(0.266) TCGA-IB-7651-01 2 3745013 3745013 A C ALLC Missense_Mutation p.T273P 0.13 tolerated(0.25) possibly_damaging(0.701) TCGA-IB-7651-01 2 37454709 37454709 G A CEBPZ Nonsense_Mutation p.R543* 0.26 TCGA-IB-7651-01 2 37454764 37454764 G T CEBPZ Silent p.V524V 0.18 TCGA-IB-7651-01 2 37464951 37464951 G T NDUFAF7 Missense_Mutation p.A117S 0.18 tolerated(0.26) benign(0.042) TCGA-IB-7651-01 2 37480266 37480266 G T PRKD3 3'UTR 0.29 TCGA-IB-7651-01 2 37509721 37509721 G A PRKD3 Missense_Mutation p.P318S 0.24 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 2 37509738 37509738 C T PRKD3 Missense_Mutation p.R312H 0.24 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 2 37520372 37520372 G T PRKD3 Missense_Mutation p.L111I 0.13 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 37586768 37586768 G A QPCT Missense_Mutation p.E105K 0.17 deleterious(0.05) benign(0.078) TCGA-IB-7651-01 2 37872828 37872829 - A CDC42EP3 3'UTR 0.15 TCGA-IB-7651-01 2 38179198 38179198 A C RMDN2 Missense_Mutation p.K280N 0.18 tolerated_low_confidence(0.51) benign(0.008) TCGA-IB-7651-01 2 38202392 38202392 G A RMDN2 Missense_Mutation p.R400H 0.27 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 2 38298132 38298132 G A CYP1B1 Silent p.D455D 0.17 TCGA-IB-7651-01 2 38298319 38298319 C A CYP1B1 Missense_Mutation p.S393I 0.26 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 38976720 38976720 C T SRSF7 Missense_Mutation p.G113R 0.09 deleterious(0.05) probably_damaging(1) TCGA-IB-7651-01 2 39030003 39030003 G A DHX57 Nonsense_Mutation p.R1291* 0.17 TCGA-IB-7651-01 2 39033740 39033740 A G DHX57 Silent p.D1259D 0.08 TCGA-IB-7651-01 2 39053104 39053104 G A DHX57 Missense_Mutation p.R967C 0.26 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 39082360 39082360 G T DHX57 Missense_Mutation p.L582M 0.25 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 39212854 39212854 C T SOS1 3'UTR 0.27 TCGA-IB-7651-01 2 39249909 39249909 G A SOS1 Missense_Mutation p.L554F 0.25 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 39285830 39285830 A T SOS1 Missense_Mutation p.I110N 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 39406280 39406281 - A CDKL4 3'UTR 0.28 TCGA-IB-7651-01 2 39406330 39406330 G A CDKL4 Nonsense_Mutation p.Q309* 0.07 TCGA-IB-7651-01 2 39440588 39440588 C T CDKL4 Missense_Mutation p.V106I 0.07 tolerated(0.96) benign(0.003) TCGA-IB-7651-01 2 39583458 39583458 C A MAP4K3 Missense_Mutation p.Q59H 0.15 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 2 42513424 42513424 G A EML4 Missense_Mutation p.V343I 0.26 tolerated(0.11) probably_damaging(0.997) TCGA-IB-7651-01 2 42720251 42720251 C T KCNG3 Missense_Mutation p.E131K 0.17 tolerated(0.09) benign(0.058) TCGA-IB-7651-01 2 42720563 42720563 G T KCNG3 Missense_Mutation p.L27M 0.32 tolerated(0.06) benign(0.071) TCGA-IB-7651-01 2 43451467 43451467 G A ZFP36L2 Silent p.S492S 0.23 TCGA-IB-7651-01 2 43453409 43453409 A G ZFP36L2 Missense_Mutation p.C16R 0.10 tolerated(0.37) benign(0.385) TCGA-IB-7651-01 2 43625219 43625219 A C THADA Missense_Mutation p.F1373C 0.25 deleterious(0) possibly_damaging(0.832) TCGA-IB-7651-01 2 43768414 43768414 G T THADA Missense_Mutation p.L1050M 0.13 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 43801511 43801511 C T THADA Missense_Mutation p.V565I 0.21 tolerated(0.61) benign(0.085) TCGA-IB-7651-01 2 43805724 43805724 C T THADA Silent p.Q248Q 0.20 TCGA-IB-7651-01 2 43814082 43814082 C T THADA Missense_Mutation p.R121H 0.12 tolerated(0.22) benign(0.004) TCGA-IB-7651-01 2 43922354 43922354 A G PLEKHH2 Missense_Mutation p.K165E 0.26 tolerated(0.07) benign(0.036) TCGA-IB-7651-01 2 43924345 43924345 C A PLEKHH2 Missense_Mutation p.L180I 0.09 tolerated(0.41) benign(0.001) TCGA-IB-7651-01 2 43939382 43939382 A G PLEKHH2 Missense_Mutation p.T774A 0.17 deleterious(0.02) benign(0.028) TCGA-IB-7651-01 2 43953531 43953531 G A PLEKHH2 Missense_Mutation p.V888I 0.19 tolerated(0.08) benign(0.008) TCGA-IB-7651-01 2 43965632 43965632 G A PLEKHH2 Silent p.Q1032Q 0.28 TCGA-IB-7651-01 2 43973084 43973084 G A PLEKHH2 Missense_Mutation p.R1212H 0.19 deleterious(0) benign(0.079) TCGA-IB-7651-01 2 44051455 44051455 T A ABCG5 Missense_Mutation p.N341Y 0.18 deleterious(0.01) possibly_damaging(0.62) TCGA-IB-7651-01 2 44055358 44055358 C A ABCG5 Intron 0.14 TCGA-IB-7651-01 2 44121724 44121724 A G LRPPRC Silent p.N1315N 0.13 TCGA-IB-7651-01 2 44132886 44132886 G A LRPPRC Silent p.N1103N 0.33 TCGA-IB-7651-01 2 44459530 44459530 A G PPM1B 3'Flank 0.27 TCGA-IB-7651-01 2 44502742 44502742 G T SLC3A1 Missense_Mutation p.G23V 0.20 deleterious(0) probably_damaging(0.931) TCGA-IB-7651-01 2 44508543 44508543 G A SLC3A1 Missense_Mutation p.D210N 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 44547732 44547732 G A SLC3A1 Missense_Mutation p.R671Q 0.13 tolerated(0.06) benign(0.016) TCGA-IB-7651-01 2 44617401 44617401 T C CAMKMT Silent p.N111N 0.22 TCGA-IB-7651-01 2 44999357 44999357 C T CAMKMT 3'UTR 0.14 TCGA-IB-7651-01 2 45645577 45645577 G T SRBD1 Missense_Mutation p.L754M 0.29 tolerated(0.25) possibly_damaging(0.517) TCGA-IB-7651-01 2 46234679 46234679 C T PRKCE Missense_Mutation p.S381F 0.25 tolerated(0.09) benign(0.001) TCGA-IB-7651-01 2 46603819 46603819 G T EPAS1 Missense_Mutation p.K392N 0.12 deleterious(0.01) benign(0.049) TCGA-IB-7651-01 2 46605085 46605085 G A EPAS1 Silent p.P434P 0.31 TCGA-IB-7651-01 2 46605830 46605830 A G EPAS1 Missense_Mutation p.D493G 0.05 tolerated(0.07) benign(0.001) TCGA-IB-7651-01 2 46607801 46607801 G T EPAS1 Missense_Mutation p.A664S 0.15 tolerated(0.77) benign(0.004) TCGA-IB-7651-01 2 46608739 46608739 G A EPAS1 Missense_Mutation p.A684T 0.25 tolerated(0.61) benign(0.001) TCGA-IB-7651-01 2 46609140 46609140 A G EPAS1 Silent p.S733S 0.23 TCGA-IB-7651-01 2 47221507 47221507 G T TTC7A Missense_Mutation p.K285N 0.03 deleterious(0) benign(0.082) TCGA-IB-7651-01 2 47693796 47693796 G T MSH2 Splice_Site p.X504_splice 0.14 TCGA-IB-7651-01 2 48018178 48018178 A T MSH6 Nonsense_Mutation p.K125* 0.28 TCGA-IB-7651-01 2 48026622 48026622 A C MSH6 Silent p.A500A 0.22 TCGA-IB-7651-01 2 48030670 48030670 G A MSH6 Missense_Mutation p.R1095H 0.23 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 2 48033396 48033396 G T MSH6 Nonsense_Mutation p.E1234* 0.19 TCGA-IB-7651-01 2 48037464 48037464 A G FBXO11 Missense_Mutation p.F777L 0.14 tolerated(0.76) benign(0.024) TCGA-IB-7651-01 2 48725768 48725768 C T PPP1R21 Missense_Mutation p.A610V 0.17 tolerated(0.33) benign(0.403) TCGA-IB-7651-01 2 48734492 48734492 G A PPP1R21 Missense_Mutation p.A685T 0.21 tolerated(0.19) possibly_damaging(0.861) TCGA-IB-7651-01 2 48808368 48808368 A G STON1-GTF2A1L Missense_Mutation p.D199G 0.26 deleterious(0.04) possibly_damaging(0.772) TCGA-IB-7651-01 2 48808780 48808780 G T STON1-GTF2A1L Missense_Mutation p.E336D 0.17 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 2 48809668 48809668 A G STON1-GTF2A1L Silent p.V632V 0.19 TCGA-IB-7651-01 2 48921388 48921388 C A LHCGR Missense_Mutation p.V308L 0.10 tolerated(0.6) benign(0.001) TCGA-IB-7651-01 2 50149333 50149333 G A NRXN1 Missense_Mutation p.R1465W 0.15 deleterious(0) probably_damaging(0.975) TCGA-IB-7651-01 2 50724826 50724826 G A NRXN1 Silent p.L882L 0.17 TCGA-IB-7651-01 2 51255063 51255063 C T NRXN1 Missense_Mutation p.V117M 0.13 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 2 51255298 51255298 G A NRXN1 Silent p.G38G 0.40 TCGA-IB-7651-01 2 53977944 53977944 C A ASB3 Nonsense_Mutation p.E146* 0.14 TCGA-IB-7651-01 2 53977992 53977992 C T ASB3 Missense_Mutation p.V130I 0.15 tolerated(0.3) benign(0.013) TCGA-IB-7651-01 2 54117259 54117259 A G PSME4 Silent p.A1426A 0.24 TCGA-IB-7651-01 2 54127092 54127092 G A PSME4 Silent p.N1116N 0.16 TCGA-IB-7651-01 2 54133798 54133798 G A PSME4 Silent p.Y960Y 0.16 TCGA-IB-7651-01 2 54159848 54159848 C T PSME4 Missense_Mutation p.S336N 0.23 deleterious(0.01) benign(0.171) TCGA-IB-7651-01 2 54753662 54753662 C T SPTBN1 Missense_Mutation p.S36F 0.16 deleterious(0) probably_damaging(0.984) TCGA-IB-7651-01 2 54856651 54856651 G A SPTBN1 Missense_Mutation p.A794T 0.17 tolerated(0.3) benign(0.015) TCGA-IB-7651-01 2 54874327 54874327 G T SPTBN1 Missense_Mutation p.E1642D 0.16 tolerated(0.22) benign(0.002) TCGA-IB-7651-01 2 55252338 55252338 C T RTN4 Missense_Mutation p.S966N 0.08 deleterious(0.04) benign(0.059) TCGA-IB-7651-01 2 55253303 55253303 A G RTN4 Silent p.V644V 0.18 TCGA-IB-7651-01 2 55407780 55407780 G A CLHC1 Missense_Mutation p.A417V 0.18 tolerated(0.13) benign(0.211) TCGA-IB-7651-01 2 55589552 55589552 C T CCDC88A Silent p.L173L 0.22 TCGA-IB-7651-01 2 55756108 55756108 G A CCDC104 Missense_Mutation p.R126Q 0.07 tolerated(0.05) benign(0.04) TCGA-IB-7651-01 2 55761032 55761032 G A CCDC104 Missense_Mutation p.D141N 0.20 deleterious(0.01) benign(0.053) TCGA-IB-7651-01 2 55825881 55825881 T C SMEK2 Missense_Mutation p.I198V 0.30 tolerated(0.35) benign(0.002) TCGA-IB-7651-01 2 55825941 55825941 G A SMEK2 Silent p.L178L 0.16 TCGA-IB-7651-01 2 55871818 55871818 A T PNPT1 Missense_Mutation p.F620L 0.14 tolerated(0.69) benign(0.048) TCGA-IB-7651-01 2 55874502 55874502 G A PNPT1 Missense_Mutation p.R528C 0.14 deleterious(0.03) benign(0.077) TCGA-IB-7651-01 2 56094228 56094228 C T EFEMP1 Missense_Mutation p.V488M 0.23 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 56094325 56094325 T C EFEMP1 Silent p.L455L 0.25 TCGA-IB-7651-01 2 56098049 56098049 G A EFEMP1 Nonsense_Mutation p.R376* 0.29 TCGA-IB-7651-01 2 56144918 56144918 G A EFEMP1 Silent p.G133G 0.25 TCGA-IB-7651-01 2 56144958 56144958 G A EFEMP1 Missense_Mutation p.A120V 0.18 tolerated(0.4) benign(0.002) TCGA-IB-7651-01 2 56420013 56420013 G T CCDC85A Missense_Mutation p.K226N 0.21 tolerated(0.09) probably_damaging(0.996) TCGA-IB-7651-01 2 56420234 56420234 G T CCDC85A Missense_Mutation p.S300I 0.06 deleterious_low_confidence(0.01) benign(0.333) TCGA-IB-7651-01 2 56420278 56420278 G T CCDC85A Nonsense_Mutation p.E315* 0.06 TCGA-IB-7651-01 2 5832882 5832882 C T SOX11 Missense_Mutation p.A10V 0.12 tolerated(0.06) benign(0.075) TCGA-IB-7651-01 2 5833253 5833253 G A SOX11 Missense_Mutation p.A134T 0.19 tolerated(0.09) possibly_damaging(0.639) TCGA-IB-7651-01 2 58386379 58386379 T C FANCL 3'Flank 0.26 TCGA-IB-7651-01 2 60687463 60687463 C A BCL11A 3'UTR 0.21 TCGA-IB-7651-01 2 60688136 60688136 C T BCL11A Silent p.K637K 0.22 TCGA-IB-7651-01 2 60688595 60688595 G A BCL11A Silent p.D484D 0.25 TCGA-IB-7651-01 2 60983475 60983475 C T PAPOLG 5'UTR 0.19 TCGA-IB-7651-01 2 61145657 61145657 G A REL Missense_Mutation p.V257I 0.27 tolerated(0.14) probably_damaging(0.975) TCGA-IB-7651-01 2 61169397 61169397 T C PUS10 3'UTR 0.27 TCGA-IB-7651-01 2 61304140 61304140 A G KIAA1841 Missense_Mutation p.M173V 0.16 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 2 61343134 61343134 A C KIAA1841 Missense_Mutation p.K589Q 0.22 tolerated(0.06) benign(0.12) TCGA-IB-7651-01 2 61344641 61344641 C A KIAA1841 Silent p.S635S 0.16 TCGA-IB-7651-01 2 61411915 61411915 C A AHSA2 Missense_Mutation p.L19M 0.23 deleterious(0.03) possibly_damaging(0.548) TCGA-IB-7651-01 2 61575613 61575613 T G USP34 Missense_Mutation p.E559D 0.18 tolerated_low_confidence(0.14) benign(0.073) TCGA-IB-7651-01 2 61715367 61715367 C T XPO1 Missense_Mutation p.R749Q 0.13 deleterious(0) probably_damaging(0.968) TCGA-IB-7651-01 2 62066556 62066556 C A FAM161A Missense_Mutation p.R528M 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 2 62067069 62067069 G A FAM161A Missense_Mutation p.A357V 0.08 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 62067278 62067278 A T FAM161A Silent p.V287V 0.16 TCGA-IB-7651-01 2 62132863 62132863 A C COMMD1 Missense_Mutation p.N17T 0.34 deleterious(0.02) benign(0.308) TCGA-IB-7651-01 2 62449557 62449557 C T B3GNT2 Missense_Mutation p.R68W 0.27 tolerated(0.18) benign(0.002) TCGA-IB-7651-01 2 63281286 63281286 C T OTX1 Missense_Mutation p.R68W 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 63282778 63282778 C A OTX1 Missense_Mutation p.A131D 0.24 tolerated(0.16) unknown(0) TCGA-IB-7651-01 2 63283061 63283061 C T OTX1 Silent p.Y225Y 0.24 TCGA-IB-7651-01 2 63283199 63283199 C A OTX1 Silent p.S271S 0.24 TCGA-IB-7651-01 2 63815400 63815400 C T WDPCP Silent p.R2R 0.21 TCGA-IB-7651-01 2 64109652 64109652 C T UGP2 Missense_Mutation p.S103F 0.14 deleterious(0.05) possibly_damaging(0.46) TCGA-IB-7651-01 2 64779021 64779021 T G AFTPH Missense_Mutation p.V138G 0.15 tolerated(0.44) benign(0.005) TCGA-IB-7651-01 2 64779607 64779607 G T AFTPH Missense_Mutation p.K333N 0.12 tolerated_low_confidence(0.4) benign(0.012) TCGA-IB-7651-01 2 64863365 64863365 C A SERTAD2 Missense_Mutation p.S214I 0.19 deleterious(0.05) benign(0.02) TCGA-IB-7651-01 2 64863673 64863673 C T SERTAD2 Silent p.A111A 0.29 TCGA-IB-7651-01 2 65243637 65243637 C T SLC1A4 Silent p.I288I 0.09 TCGA-IB-7651-01 2 65296585 65296585 C T CEP68 Silent p.L3L 0.13 TCGA-IB-7651-01 2 65298745 65298745 G A CEP68 Missense_Mutation p.S172N 0.26 tolerated(0.25) benign(0.002) TCGA-IB-7651-01 2 65301264 65301264 G T CEP68 Intron 0.29 TCGA-IB-7651-01 2 65315570 65315570 T G RAB1A 3'UTR 0.17 TCGA-IB-7651-01 2 65540683 65540683 G A SPRED2 Silent p.C403C 0.14 TCGA-IB-7651-01 2 65540906 65540906 G A SPRED2 Missense_Mutation p.A329V 0.26 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 2 67630386 67630386 T G ETAA1 Missense_Mutation p.L191R 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 67631862 67631862 C T ETAA1 Missense_Mutation p.S683F 0.18 deleterious(0.04) probably_damaging(0.963) TCGA-IB-7651-01 2 68274319 68274319 C T C1D Missense_Mutation p.E42K 0.13 deleterious(0.04) possibly_damaging(0.864) TCGA-IB-7651-01 2 68361924 68361924 T G WDR92 Missense_Mutation p.K259T 0.17 tolerated(0.06) benign(0.193) TCGA-IB-7651-01 2 68544108 68544108 C T CNRIP1 Intron 0.13 TCGA-IB-7651-01 2 68691350 68691350 C T FBXO48 Silent p.L153L 0.08 TCGA-IB-7651-01 2 68753207 68753207 G A APLF Missense_Mutation p.G213R 0.23 tolerated(0.56) benign(0.004) TCGA-IB-7651-01 2 68873141 68873141 T C PROKR1 Missense_Mutation p.I63T 0.27 deleterious(0.01) possibly_damaging(0.54) TCGA-IB-7651-01 2 69002461 69002461 G T ARHGAP25 Missense_Mutation p.R57M 0.27 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 2 69043302 69043302 A C ARHGAP25 Intron 0.32 TCGA-IB-7651-01 2 69046363 69046363 C T ARHGAP25 Missense_Mutation p.P371L 0.14 tolerated(0.12) benign(0.139) TCGA-IB-7651-01 2 69351694 69351694 C T ANTXR1 Intron 0.20 TCGA-IB-7651-01 2 69553337 69553337 G T GFPT1 Missense_Mutation p.S695Y 0.25 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 2 70123668 70123668 C T SNRNP27 Missense_Mutation p.R86W 0.16 deleterious(0.04) unknown(0) TCGA-IB-7651-01 2 70165302 70165302 C T MXD1 Silent p.S184S 0.27 TCGA-IB-7651-01 2 70188262 70188262 C T ASPRV1 Missense_Mutation p.V187I 0.16 tolerated(0.27) benign(0.007) TCGA-IB-7651-01 2 7027154 7027154 C T RSAD2 Silent p.N199N 0.21 TCGA-IB-7651-01 2 70315123 70315123 T G PCBP1 Missense_Mutation p.I83S 0.25 deleterious(0.05) possibly_damaging(0.66) TCGA-IB-7651-01 2 70315305 70315305 C T PCBP1 Missense_Mutation p.R144W 0.26 tolerated(0.05) benign(0.133) TCGA-IB-7651-01 2 70315942 70315942 G T PCBP1 Missense_Mutation p.S356I 0.23 deleterious_low_confidence(0) benign(0.382) TCGA-IB-7651-01 2 70502729 70502729 G T PCYOX1 Missense_Mutation p.A264S 0.32 tolerated(0.47) benign(0.158) TCGA-IB-7651-01 2 70508725 70508725 A G SNRPG 3'UTR 0.25 TCGA-IB-7651-01 2 70901918 70901918 T C ADD2 Missense_Mutation p.T545A 0.26 tolerated(0.74) benign(0.001) TCGA-IB-7651-01 2 70904002 70904002 G A ADD2 Nonsense_Mutation p.R507* 0.19 TCGA-IB-7651-01 2 70918003 70918003 T C ADD2 Missense_Mutation p.D255G 0.10 deleterious(0.03) possibly_damaging(0.622) TCGA-IB-7651-01 2 70933444 70933444 G A ADD2 Missense_Mutation p.R33C 0.29 deleterious(0) possibly_damaging(0.459) TCGA-IB-7651-01 2 71043855 71043855 C A CLEC4F Nonsense_Mutation p.E220* 0.05 TCGA-IB-7651-01 2 71046523 71046523 C T CLEC4F Missense_Mutation p.D78N 0.22 tolerated(0.21) benign(0.016) TCGA-IB-7651-01 2 71060782 71060782 C T CD207 Missense_Mutation p.R187Q 0.31 tolerated(1) benign(0.001) TCGA-IB-7651-01 2 71305565 71305565 G T NAGK Missense_Mutation p.R367M 0.21 deleterious(0.02) benign(0.355) TCGA-IB-7651-01 2 71351596 71351596 C A MCEE Missense_Mutation p.G40C 0.27 deleterious(0.04) benign(0.008) TCGA-IB-7651-01 2 71654323 71654323 T G ZNF638 Missense_Mutation p.V1775G 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 7170280 7170280 C T RNF144A Silent p.Y227Y 0.06 TCGA-IB-7651-01 2 71797772 71797772 G A DYSF Silent p.K1043K 0.20 TCGA-IB-7651-01 2 71883410 71883410 G T DYSF Missense_Mutation p.G1582V 0.25 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 2 72371142 72371142 G A CYP26B1 Silent p.G135G 0.06 TCGA-IB-7651-01 2 72371289 72371289 C T CYP26B1 Silent p.T86T 0.17 TCGA-IB-7651-01 2 73145311 73145311 G A EMX1 Silent p.S110S 0.36 TCGA-IB-7651-01 2 73198789 73198789 G A SFXN5 Silent p.V217V 0.08 TCGA-IB-7651-01 2 73449901 73449901 C T SMYD5 Missense_Mutation p.R221W 0.12 deleterious(0.02) probably_damaging(0.918) TCGA-IB-7651-01 2 73450209 73450209 A G SMYD5 Missense_Mutation p.T251A 0.26 deleterious(0.02) probably_damaging(0.932) TCGA-IB-7651-01 2 73470188 73470188 G A CCT7 Silent p.V108V 0.16 TCGA-IB-7651-01 2 73471724 73471724 C A CCT7 Missense_Mutation p.L167M 0.16 deleterious(0.01) possibly_damaging(0.652) TCGA-IB-7651-01 2 73480000 73480000 A G CCT7 3'UTR 0.19 TCGA-IB-7651-01 2 73486119 73486119 G A FBXO41 Silent p.G873G 0.32 TCGA-IB-7651-01 2 73519155 73519155 G A EGR4 Silent p.S400S 0.10 TCGA-IB-7651-01 2 73675536 73675536 C T ALMS1 Missense_Mutation p.P627S 0.22 benign(0.131) TCGA-IB-7651-01 2 73828501 73828501 G A ALMS1 Missense_Mutation p.A4017T 0.26 benign(0.441) TCGA-IB-7651-01 2 73829384 73829384 G A ALMS1 Missense_Mutation p.V4062I 0.27 probably_damaging(0.998) TCGA-IB-7651-01 2 73901051 73901051 C T ALMS1P RNA 0.16 TCGA-IB-7651-01 2 74146577 74146577 C T ACTG2 Missense_Mutation p.R336W 0.14 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-IB-7651-01 2 74273825 74273825 G A TET3 Missense_Mutation p.A126T 0.27 tolerated(0.36) benign(0.301) TCGA-IB-7651-01 2 74274777 74274777 A T TET3 Missense_Mutation p.K443M 0.07 deleterious(0.01) probably_damaging(0.931) TCGA-IB-7651-01 2 74435776 74435776 C T MTHFD2 Nonsense_Mutation p.R164* 0.27 TCGA-IB-7651-01 2 74482960 74482960 C T SLC4A5 Missense_Mutation p.V323M 0.24 deleterious(0) probably_damaging(0.969) TCGA-IB-7651-01 2 74491312 74491312 C T SLC4A5 Missense_Mutation p.R226H 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 74491387 74491387 C T SLC4A5 Missense_Mutation p.R201Q 0.14 tolerated(0.51) benign(0.233) TCGA-IB-7651-01 2 74595911 74595911 C A DCTN1 Missense_Mutation p.G600C 0.12 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 74654384 74654384 G A RTKN Silent p.C424C 0.16 TCGA-IB-7651-01 2 74687832 74687832 T C WBP1 3'UTR 0.27 TCGA-IB-7651-01 2 74688381 74688381 G A MOGS 3'UTR 0.14 TCGA-IB-7651-01 2 74689272 74689272 G T MOGS Silent p.L548L 0.16 TCGA-IB-7651-01 2 74691694 74691694 T C MOGS Missense_Mutation p.T170A 0.16 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 2 74702391 74702391 G A CCDC142 Missense_Mutation p.A579V 0.04 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 2 74719130 74719130 G T TTC31 Splice_Site p.X293_splice 0.18 TCGA-IB-7651-01 2 74749838 74749838 T C DQX1 Missense_Mutation p.D455G 0.04 deleterious(0) probably_damaging(0.917) TCGA-IB-7651-01 2 74757547 74757547 G A HTRA2 Silent p.P138P 0.26 TCGA-IB-7651-01 2 74760624 74760624 C A LOXL3 3'UTR 0.14 TCGA-IB-7651-01 2 74762766 74762766 G A LOXL3 Silent p.A455A 0.29 TCGA-IB-7651-01 2 74802682 74802682 G A M1AP Silent p.C319C 0.26 TCGA-IB-7651-01 2 75094762 75094762 G T HK2 Splice_Site p.X76_splice 0.17 TCGA-IB-7651-01 2 75105841 75105841 G A HK2 Missense_Mutation p.R353H 0.35 tolerated(0.47) benign(0.002) TCGA-IB-7651-01 2 75425709 75425709 C T TACR1 Missense_Mutation p.A118T 0.13 deleterious(0.04) possibly_damaging(0.614) TCGA-IB-7651-01 2 75425831 75425831 G A TACR1 Missense_Mutation p.A77V 0.15 deleterious(0) probably_damaging(0.985) TCGA-IB-7651-01 2 75720313 75720313 G A EVA1A 3'UTR 0.16 TCGA-IB-7651-01 2 75720521 75720521 G A EVA1A Silent p.H100H 0.19 TCGA-IB-7651-01 2 77748880 77748880 T C LRRTM4 Intron 0.17 TCGA-IB-7651-01 2 79253879 79253879 C A REG3G Missense_Mutation p.S39R 0.24 tolerated(0.27) benign(0.014) TCGA-IB-7651-01 2 79347956 79347956 C A REG1A 5'UTR 0.15 TCGA-IB-7651-01 2 79350005 79350005 C A REG1A Silent p.S120S 0.15 TCGA-IB-7651-01 2 80085159 80085159 T G CTNNA2 Missense_Mutation p.S107A 0.14 tolerated(0.96) benign(0.008) TCGA-IB-7651-01 2 80101316 80101316 G A CTNNA2 Missense_Mutation p.A234T 0.21 tolerated(0.17) possibly_damaging(0.478) TCGA-IB-7651-01 2 80529833 80529833 C A LRRTM1 Missense_Mutation p.S371I 0.23 tolerated(0.13) benign(0.04) TCGA-IB-7651-01 2 80530750 80530750 G A LRRTM1 Silent p.S65S 0.27 TCGA-IB-7651-01 2 80530896 80530896 G A LRRTM1 Missense_Mutation p.P17S 0.25 tolerated(0.16) possibly_damaging(0.725) TCGA-IB-7651-01 2 80646714 80646714 C T CTNNA2 Silent p.N426N 0.06 TCGA-IB-7651-01 2 80874927 80874927 G A CTNNA2 Missense_Mutation p.R883Q 0.15 deleterious(0.03) possibly_damaging(0.852) TCGA-IB-7651-01 2 84668576 84668576 T G SUCLG1 Missense_Mutation p.E109A 0.13 tolerated(0.36) benign(0.007) TCGA-IB-7651-01 2 84777068 84777068 A C DNAH6 Missense_Mutation p.N458H 0.19 tolerated(0.05) benign(0.043) TCGA-IB-7651-01 2 84811238 84811238 C T DNAH6 Missense_Mutation p.S782F 0.22 tolerated(0.51) benign(0.005) TCGA-IB-7651-01 2 84811312 84811312 C T DNAH6 Missense_Mutation p.H807Y 0.21 tolerated(0.07) benign(0.171) TCGA-IB-7651-01 2 85133188 85133188 C T TMSB10 Missense_Mutation p.A16V 0.11 tolerated(0.06) benign(0.012) TCGA-IB-7651-01 2 85536398 85536398 C T TCF7L1 Missense_Mutation p.A527V 0.25 deleterious_low_confidence(0.05) benign(0.272) TCGA-IB-7651-01 2 85570385 85570385 C T RETSAT Missense_Mutation p.A605T 0.09 tolerated(0.18) benign(0.015) TCGA-IB-7651-01 2 85578815 85578815 C T RETSAT Missense_Mutation p.E115K 0.26 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 2 85598230 85598230 C T ELMOD3 Nonsense_Mutation p.R128* 0.04 TCGA-IB-7651-01 2 85662057 85662057 G A SH2D6 5'UTR 0.08 TCGA-IB-7651-01 2 85809026 85809026 A C VAMP8 3'UTR 0.18 TCGA-IB-7651-01 2 85826704 85826704 G T TMEM150A Missense_Mutation p.A173D 0.26 tolerated(0.19) benign(0.378) TCGA-IB-7651-01 2 85890797 85890797 G A SFTPB Silent p.S294S 0.34 TCGA-IB-7651-01 2 86266459 86266459 G T POLR1A Nonsense_Mutation p.C1289* 0.15 TCGA-IB-7651-01 2 86281383 86281383 G T POLR1A Silent p.I696I 0.22 TCGA-IB-7651-01 2 86310237 86310237 C T POLR1A Missense_Mutation p.R262H 0.24 deleterious(0.01) possibly_damaging(0.861) TCGA-IB-7651-01 2 86325797 86325797 C T POLR1A Silent p.Q123Q 0.18 TCGA-IB-7651-01 2 86354302 86354302 G A PTCD3 Missense_Mutation p.V324I 0.11 tolerated(0.19) benign(0.015) TCGA-IB-7651-01 2 86371725 86371725 A G IMMT Missense_Mutation p.I648T 0.14 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 2 86459903 86459903 C A REEP1 Missense_Mutation p.R154I 0.27 deleterious(0) possibly_damaging(0.905) TCGA-IB-7651-01 2 86831267 86831267 C A RNF103 Missense_Mutation p.S586I 0.25 tolerated(0.16) benign(0.05) TCGA-IB-7651-01 2 86831816 86831816 G T RNF103 Missense_Mutation p.A403D 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 2 87000470 87000470 G A RMND5A Splice_Site p.X371_splice 0.15 TCGA-IB-7651-01 2 87069373 87069373 G A CD8B Intron 0.11 TCGA-IB-7651-01 2 88328012 88328012 G A KRCC1 Missense_Mutation p.A24V 0.22 deleterious(0) probably_damaging(0.946) TCGA-IB-7651-01 2 88328060 88328060 T C KRCC1 Missense_Mutation p.Y8C 0.21 deleterious(0.05) benign(0.209) TCGA-IB-7651-01 2 88383924 88383924 G A SMYD1 Missense_Mutation p.R76H 0.21 deleterious(0.01) probably_damaging(0.97) TCGA-IB-7651-01 2 88387540 88387540 G A SMYD1 Nonsense_Mutation p.W158* 0.24 TCGA-IB-7651-01 2 88405903 88405903 C T SMYD1 Silent p.N347N 0.16 TCGA-IB-7651-01 2 88427580 88427580 C T FABP1 5'UTR 0.19 TCGA-IB-7651-01 2 88474333 88474333 G A THNSL2 Silent p.K133K 0.24 TCGA-IB-7651-01 2 88482594 88482594 T G THNSL2 Splice_Site p.X359_splice 0.19 TCGA-IB-7651-01 2 88485522 88485522 G A THNSL2 Silent p.E445E 0.24 TCGA-IB-7651-01 2 8871069 8871069 G A KIDINS220 Silent p.F1699F 0.25 TCGA-IB-7651-01 2 8871237 8871237 C T KIDINS220 Missense_Mutation p.M1643I 0.17 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-IB-7651-01 2 8871626 8871626 G A KIDINS220 Silent p.L1514L 0.16 TCGA-IB-7651-01 2 88828668 88828668 A G TEX37 Silent p.R73R 0.16 TCGA-IB-7651-01 2 88874864 88874864 C A EIF2AK3 Missense_Mutation p.A713S 0.26 tolerated(0.32) benign(0.009) TCGA-IB-7651-01 2 88890358 88890358 C T EIF2AK3 Missense_Mutation p.G327E 0.07 tolerated(0.1) benign(0.062) TCGA-IB-7651-01 2 8910878 8910878 C T KIDINS220 Missense_Mutation p.R978Q 0.28 deleterious(0.03) possibly_damaging(0.804) TCGA-IB-7651-01 2 89185459 89185459 C G IGKV4-1 Nonsense_Mutation p.Y51* 0.26 TCGA-IB-7651-01 2 89185616 89185616 C A IGKV4-1 Missense_Mutation p.L104M 0.07 tolerated(0.16) probably_damaging(0.987) TCGA-IB-7651-01 2 8926341 8926341 G T KIDINS220 Missense_Mutation p.T645N 0.24 deleterious(0.04) benign(0.367) TCGA-IB-7651-01 2 8926424 8926424 C T KIDINS220 Missense_Mutation p.M617I 0.07 tolerated(0.15) probably_damaging(0.997) TCGA-IB-7651-01 2 89265834 89265834 G T IGKV1-6 Missense_Mutation p.L100M 0.26 tolerated(0.07) possibly_damaging(0.885) TCGA-IB-7651-01 2 89326879 89326879 G A IGKV3-11 Missense_Mutation p.A45V 0.21 deleterious(0.01) possibly_damaging(0.801) TCGA-IB-7651-01 2 89568043 89568043 A G IGKV1-33 Silent p.C22C 0.16 TCGA-IB-7651-01 2 8957806 8957806 T C KIDINS220 Missense_Mutation p.H83R 0.24 deleterious(0) probably_damaging(0.925) TCGA-IB-7651-01 2 89952914 89952914 C A IGKV1D-33 Missense_Mutation p.L12I 0.05 tolerated(0.09) probably_damaging(0.955) TCGA-IB-7651-01 2 89986947 89986947 T G IGKV2D-29 Silent p.V76V 0.18 TCGA-IB-7651-01 2 90060849 90060849 C A IGKV6D-21 Missense_Mutation p.L66I 0.09 tolerated(0.05) possibly_damaging(0.796) TCGA-IB-7651-01 2 90153739 90153739 G A IGKV3D-15 5'UTR 0.08 TCGA-IB-7651-01 2 90153793 90153793 G T IGKV3D-15 Missense_Mutation p.D17Y 0.14 deleterious(0) possibly_damaging(0.845) TCGA-IB-7651-01 2 90248923 90248923 G A IGKV1D-43 Missense_Mutation p.D2N 0.21 deleterious_low_confidence(0.05) benign(0.062) TCGA-IB-7651-01 2 9463281 9463281 G A ASAP2 Missense_Mutation p.A168T 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 2 9541430 9541430 G A ASAP2 Missense_Mutation p.A951T 0.15 tolerated(0.22) possibly_damaging(0.73) TCGA-IB-7651-01 2 9543499 9543499 G A ASAP2 3'UTR 0.16 TCGA-IB-7651-01 2 95481117 95481117 C A ANKRD20A8P RNA 0.15 TCGA-IB-7651-01 2 95481343 95481343 C T ANKRD20A8P RNA 0.23 TCGA-IB-7651-01 2 95537600 95537600 C T TEKT4 Silent p.G92G 0.35 TCGA-IB-7651-01 2 95537712 95537712 C A TEKT4 Missense_Mutation p.L130M 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 2 95719261 95719261 G A MAL 3'UTR 0.18 TCGA-IB-7651-01 2 95818951 95818951 C T ZNF514 Silent p.G16G 0.09 TCGA-IB-7651-01 2 95847399 95847399 C T ZNF2 Missense_Mutation p.H276Y 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 95941711 95941711 G A PROM2 Missense_Mutation p.A110T 0.24 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 2 95945719 95945719 C T PROM2 Silent p.G467G 0.21 TCGA-IB-7651-01 2 96012774 96012774 A G KCNIP3 Intron 0.12 TCGA-IB-7651-01 2 96040138 96040138 G A KCNIP3 Silent p.E92E 0.20 TCGA-IB-7651-01 2 9621566 9621566 C T IAH1 Silent p.C145C 0.16 TCGA-IB-7651-01 2 9658104 9658104 C T ADAM17 Missense_Mutation p.V373I 0.23 tolerated(0.46) benign(0) TCGA-IB-7651-01 2 96691710 96691710 C A GPAT2 Missense_Mutation p.E402D 0.20 deleterious(0.01) unknown(0) TCGA-IB-7651-01 2 9676016 9676016 C T ADAM17 Missense_Mutation p.D133N 0.06 tolerated(0.1) benign(0.072) TCGA-IB-7651-01 2 96781645 96781645 G A ADRA2B Missense_Mutation p.R82C 0.25 deleterious(0.01) possibly_damaging(0.764) TCGA-IB-7651-01 2 96932184 96932184 C A CIAO1 Silent p.A32A 0.13 TCGA-IB-7651-01 2 96944327 96944327 C A SNRNP200 Missense_Mutation p.G1816C 0.09 deleterious(0.02) probably_damaging(0.998) TCGA-IB-7651-01 2 9695662 9695662 C T ADAM17 Missense_Mutation p.G25S 0.16 tolerated_low_confidence(0.71) benign(0.002) TCGA-IB-7651-01 2 9695737 9695737 T G ADAM17 5'UTR 0.28 TCGA-IB-7651-01 2 96992435 96992435 T C ITPRIPL1 Silent p.V30V 0.19 TCGA-IB-7651-01 2 97007618 97007618 C T NCAPH Silent p.A86A 0.16 TCGA-IB-7651-01 2 97009891 97009891 A C NCAPH Missense_Mutation p.K215T 0.20 deleterious(0) possibly_damaging(0.888) TCGA-IB-7651-01 2 97026333 97026333 C T NCAPH Missense_Mutation p.T491I 0.25 tolerated(0.06) possibly_damaging(0.759) TCGA-IB-7651-01 2 97165184 97165184 G T NEURL3 Intron 0.16 TCGA-IB-7651-01 2 97268076 97268076 C T KANSL3 Splice_Site p.X754_splice 0.16 TCGA-IB-7651-01 2 97276577 97276577 A C KANSL3 Missense_Mutation p.F402C 0.24 deleterious(0) possibly_damaging(0.854) TCGA-IB-7651-01 2 97427765 97427765 G T CNNM4 Missense_Mutation p.E343D 0.23 tolerated(0.06) probably_damaging(0.959) TCGA-IB-7651-01 2 97427930 97427930 G A CNNM4 Silent p.S398S 0.17 TCGA-IB-7651-01 2 97427977 97427977 A C CNNM4 Missense_Mutation p.E414A 0.22 deleterious(0.03) possibly_damaging(0.546) TCGA-IB-7651-01 2 97493533 97493533 A G CNNM3 Missense_Mutation p.S529G 0.13 tolerated(0.2) benign(0.09) TCGA-IB-7651-01 2 97506535 97506535 C T ANKRD23 Missense_Mutation p.A139T 0.24 tolerated(0.1) probably_damaging(1) TCGA-IB-7651-01 2 97527040 97527040 G T SEMA4C Missense_Mutation p.L609I 0.05 tolerated(0.12) possibly_damaging(0.504) TCGA-IB-7651-01 2 97529765 97529765 G A SEMA4C Missense_Mutation p.R410C 0.16 deleterious(0) probably_damaging(0.937) TCGA-IB-7651-01 2 98340826 98340826 G A ZAP70 Silent p.E109E 0.15 TCGA-IB-7651-01 2 98340886 98340886 G T ZAP70 Missense_Mutation p.Q129H 0.19 tolerated(0.06) benign(0.007) TCGA-IB-7651-01 2 98350016 98350016 C T ZAP70 Nonsense_Mutation p.R283* 0.08 TCGA-IB-7651-01 2 98351789 98351789 G A ZAP70 Missense_Mutation p.A387T 0.27 deleterious(0) possibly_damaging(0.899) TCGA-IB-7651-01 2 98354262 98354262 G A ZAP70 Missense_Mutation p.E509K 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 2 98373767 98373767 G A TMEM131 Missense_Mutation p.A1816V 0.19 deleterious_low_confidence(0.02) benign(0.024) TCGA-IB-7651-01 2 98373796 98373796 G T TMEM131 Missense_Mutation p.S1806R 0.23 deleterious_low_confidence(0.01) benign(0.441) TCGA-IB-7651-01 2 98422056 98422056 T C TMEM131 Silent p.L722L 0.22 TCGA-IB-7651-01 2 98430750 98430750 G A TMEM131 Missense_Mutation p.A465V 0.17 deleterious(0.02) possibly_damaging(0.7) TCGA-IB-7651-01 2 98709695 98709695 G A VWA3B Missense_Mutation p.S47N 0.09 tolerated(0.17) benign(0.013) TCGA-IB-7651-01 2 98750321 98750321 G T VWA3B Nonsense_Mutation p.E303* 0.16 TCGA-IB-7651-01 2 98750327 98750327 C A VWA3B Missense_Mutation p.P305T 0.16 tolerated(0.17) benign(0.024) TCGA-IB-7651-01 2 98853155 98853155 G A VWA3B Missense_Mutation p.V879I 0.14 tolerated(1) benign(0.005) TCGA-IB-7651-01 2 98928393 98928393 C T VWA3B Silent p.P1211P 0.33 TCGA-IB-7651-01 2 99008415 99008415 C A CNGA3 Missense_Mutation p.L219I 0.18 tolerated(0.32) benign(0.013) TCGA-IB-7651-01 2 99012701 99012701 C A CNGA3 Silent p.L356L 0.17 TCGA-IB-7651-01 2 99013655 99013655 C T CNGA3 Silent p.D674D 0.24 TCGA-IB-7651-01 2 99226382 99226382 C T UNC50 Missense_Mutation p.L54F 0.16 tolerated(0.06) benign(0.017) TCGA-IB-7651-01 2 99226447 99226447 C T UNC50 Silent p.D75D 0.28 TCGA-IB-7651-01 2 99438351 99438351 C T KIAA1211L Silent p.T795T 0.25 TCGA-IB-7651-01 2 99681453 99681453 C A TSGA10 Missense_Mutation p.E451D 0.17 tolerated(0.2) probably_damaging(0.998) TCGA-IB-7651-01 2 99722093 99722093 G A TSGA10 Missense_Mutation p.T93M 0.25 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 2 99786049 99786049 C A MITD1 Missense_Mutation p.K206N 0.22 deleterious(0) probably_damaging(0.912) TCGA-IB-7651-01 2 99797352 99797352 A G MITD1 Silent p.Y31Y 0.25 TCGA-IB-7651-01 2 99858877 99858877 C T LYG2 Missense_Mutation p.V197I 0.17 tolerated(0.11) benign(0.017) TCGA-IB-7651-01 2 99860445 99860445 C A LYG2 Intron 0.23 TCGA-IB-7651-01 2 99863270 99863270 G A LYG2 Silent p.G19G 0.16 TCGA-IB-7651-01 2 99907721 99907721 G A LYG1 Silent p.G104G 0.24 TCGA-IB-7651-01 2 99909020 99909020 G A LYG1 Missense_Mutation p.R43C 0.17 tolerated(0.07) benign(0.027) TCGA-IB-7651-01 2 99909057 99909057 G A LYG1 Silent p.S30S 0.29 TCGA-IB-7651-01 2 99909097 99909097 G T LYG1 Missense_Mutation p.S17Y 0.18 deleterious(0) possibly_damaging(0.906) TCGA-IB-7651-01 2 99936026 99936026 T C TXNDC9 3'UTR 0.36 TCGA-IB-7651-01 2 99980843 99980843 G T EIF5B Missense_Mutation p.R416I 0.15 probably_damaging(0.962) TCGA-IB-7651-01 3 100092477 100092477 G T TOMM70A Missense_Mutation p.L414I 0.18 tolerated(0.14) possibly_damaging(0.794) TCGA-IB-7651-01 3 100103350 100103350 T A TOMM70A Silent p.G236G 0.16 TCGA-IB-7651-01 3 10011449 10011449 G A EMC3 Missense_Mutation p.T204M 0.19 tolerated(0.22) benign(0.018) TCGA-IB-7651-01 3 100170652 100170652 A G LNP1 Silent p.V82V 0.19 TCGA-IB-7651-01 3 100287799 100287799 C A TMEM45A Missense_Mutation p.A241D 0.18 deleterious(0.01) probably_damaging(0.988) TCGA-IB-7651-01 3 100354467 100354467 G A GPR128 Intron 0.21 TCGA-IB-7651-01 3 100378676 100378676 G A GPR128 Silent p.Q656Q 0.16 TCGA-IB-7651-01 3 100432536 100432536 G A TFG Missense_Mutation p.G3R 0.21 deleterious(0.02) benign(0.421) TCGA-IB-7651-01 3 100447675 100447675 G T TFG Nonsense_Mutation p.G130* 0.18 TCGA-IB-7651-01 3 100484701 100484701 G T ABI3BP Missense_Mutation p.L901M 0.22 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 3 100493516 100493516 T G ABI3BP Missense_Mutation p.E777D 0.28 tolerated(0.57) benign(0.013) TCGA-IB-7651-01 3 100565266 100565266 G T ABI3BP Missense_Mutation p.S516Y 0.10 tolerated(0.58) possibly_damaging(0.447) TCGA-IB-7651-01 3 100569529 100569529 A G ABI3BP Silent p.T425T 0.17 TCGA-IB-7651-01 3 100645275 100645275 G A ABI3BP Missense_Mutation p.L51F 0.17 tolerated(0.28) benign(0) TCGA-IB-7651-01 3 100976376 100976376 T C IMPG2 Missense_Mutation p.N384D 0.17 tolerated(0.07) benign(0.01) TCGA-IB-7651-01 3 101047326 101047326 G A SENP7 Nonsense_Mutation p.R954* 0.18 TCGA-IB-7651-01 3 101047522 101047522 C T SENP7 Silent p.S921S 0.21 TCGA-IB-7651-01 3 10107141 10107141 G A FANCD2 Silent p.Q744Q 0.17 TCGA-IB-7651-01 3 101085608 101085608 T C SENP7 Silent p.K328K 0.09 TCGA-IB-7651-01 3 101090890 101090890 T G SENP7 Missense_Mutation p.D253A 0.14 tolerated(0.49) possibly_damaging(0.493) TCGA-IB-7651-01 3 101136544 101136544 A C SENP7 Missense_Mutation p.C125W 0.19 deleterious(0.02) possibly_damaging(0.717) TCGA-IB-7651-01 3 101284007 101284007 G T TRMT10C Missense_Mutation p.A128S 0.18 tolerated(1) benign(0.016) TCGA-IB-7651-01 3 101373562 101373562 G T ZBTB11 Silent p.G765G 0.16 TCGA-IB-7651-01 3 101383834 101383834 C T ZBTB11 Missense_Mutation p.A533T 0.19 tolerated(0.51) benign(0.003) TCGA-IB-7651-01 3 10142973 10142973 T C FANCD2 3'Flank 0.23 TCGA-IB-7651-01 3 10146033 10146033 C A FANCD2OS Missense_Mutation p.E142D 0.05 tolerated(0.14) probably_damaging(0.971) TCGA-IB-7651-01 3 101481366 101481366 T A CEP97 Missense_Mutation p.F619I 0.22 tolerated(0.09) benign(0.002) TCGA-IB-7651-01 3 101520807 101520807 C T NXPE3 Silent p.T274T 0.17 TCGA-IB-7651-01 3 101535756 101535756 T G NXPE3 Missense_Mutation p.I347S 0.20 deleterious(0) benign(0.068) TCGA-IB-7651-01 3 101570965 101570965 G A NFKBIZ Missense_Mutation p.G109D 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-IB-7651-01 3 10291033 10291033 G T TATDN2 Missense_Mutation p.S50I 0.18 tolerated_low_confidence(0.12) benign(0.073) TCGA-IB-7651-01 3 10312335 10312335 G A TATDN2 Missense_Mutation p.S490N 0.19 tolerated(0.26) benign(0.006) TCGA-IB-7651-01 3 10342953 10342953 C T SEC13 Missense_Mutation p.E321K 0.20 deleterious_low_confidence(0.03) benign(0.026) TCGA-IB-7651-01 3 10354403 10354403 G T SEC13 Missense_Mutation p.P59H 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 10400486 10400486 G A ATP2B2 Silent p.A675A 0.19 TCGA-IB-7651-01 3 10401761 10401761 G A ATP2B2 Missense_Mutation p.T569M 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 105400681 105400681 T C CBLB Intron 0.21 TCGA-IB-7651-01 3 105572504 105572504 C T CBLB Missense_Mutation p.R58K 0.20 tolerated(0.26) possibly_damaging(0.552) TCGA-IB-7651-01 3 107524307 107524307 C T BBX 3'UTR 0.19 TCGA-IB-7651-01 3 107885720 107885720 G A IFT57 Missense_Mutation p.A321V 0.20 tolerated(0.54) benign(0.029) TCGA-IB-7651-01 3 108133184 108133184 G T MYH15 Missense_Mutation p.A1367D 0.11 deleterious(0.02) benign(0.289) TCGA-IB-7651-01 3 108183499 108183499 G A MYH15 Missense_Mutation p.H593Y 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 108214643 108214643 T C MYH15 Missense_Mutation p.D252G 0.14 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 108214691 108214691 G A MYH15 Missense_Mutation p.A236V 0.25 tolerated(0.16) benign(0.006) TCGA-IB-7651-01 3 108308205 108308205 G T KIAA1524 Nonsense_Mutation p.C6* 0.22 TCGA-IB-7651-01 3 108335411 108335411 G A DZIP3 Silent p.Q94Q 0.18 TCGA-IB-7651-01 3 108366893 108366893 A C DZIP3 Missense_Mutation p.E632D 0.19 tolerated_low_confidence(0.18) probably_damaging(0.99) TCGA-IB-7651-01 3 108381086 108381086 G A DZIP3 Missense_Mutation p.G802E 0.12 deleterious(0.03) probably_damaging(0.996) TCGA-IB-7651-01 3 108626790 108626790 G T GUCA1C 3'UTR 0.10 TCGA-IB-7651-01 3 108626868 108626868 G T GUCA1C 3'UTR 0.17 TCGA-IB-7651-01 3 108634989 108634989 C T GUCA1C Missense_Mutation p.D143N 0.17 deleterious(0.02) benign(0.322) TCGA-IB-7651-01 3 108703566 108703566 T C MORC1 Missense_Mutation p.K774R 0.23 tolerated(0.15) benign(0.007) TCGA-IB-7651-01 3 108778706 108778706 C A MORC1 Missense_Mutation p.Q326H 0.13 deleterious(0.02) possibly_damaging(0.717) TCGA-IB-7651-01 3 108818260 108818260 G A MORC1 Missense_Mutation p.T123M 0.16 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 3 109026937 109026937 C A DPPA2 Missense_Mutation p.K200N 0.19 deleterious(0.03) possibly_damaging(0.834) TCGA-IB-7651-01 3 10953823 10953823 C A SLC6A11 Missense_Mutation p.L314M 0.18 deleterious(0.02) probably_damaging(0.993) TCGA-IB-7651-01 3 10974869 10974869 C A SLC6A11 Silent p.S468S 0.16 TCGA-IB-7651-01 3 10976731 10976731 T G SLC6A11 Missense_Mutation p.F531C 0.18 deleterious(0.03) possibly_damaging(0.8) TCGA-IB-7651-01 3 11067953 11067953 G A SLC6A1 Missense_Mutation p.C329Y 0.19 tolerated(0.1) benign(0.278) TCGA-IB-7651-01 3 111312309 111312309 C A ZBED2 3'UTR 0.16 TCGA-IB-7651-01 3 111603011 111603011 C T PHLDB2 Silent p.N29N 0.15 TCGA-IB-7651-01 3 111603040 111603040 G A PHLDB2 Missense_Mutation p.S39N 0.16 tolerated_low_confidence(0.66) benign(0.001) TCGA-IB-7651-01 3 111603154 111603154 C T PHLDB2 Missense_Mutation p.T77I 0.16 deleterious_low_confidence(0.04) benign(0.003) TCGA-IB-7651-01 3 111603559 111603559 G A PHLDB2 Missense_Mutation p.S212N 0.22 tolerated(1) benign(0) TCGA-IB-7651-01 3 111604339 111604339 G T PHLDB2 Intron 0.21 TCGA-IB-7651-01 3 111639200 111639200 G A PHLDB2 Silent p.E645E 0.15 TCGA-IB-7651-01 3 111658331 111658331 C T PHLDB2 Silent p.L714L 0.07 TCGA-IB-7651-01 3 111658364 111658364 C A PHLDB2 Missense_Mutation p.L725M 0.18 deleterious(0.02) possibly_damaging(0.893) TCGA-IB-7651-01 3 111782371 111782371 G T TMPRSS7 Splice_Site p.X357_splice 0.19 TCGA-IB-7651-01 3 111887888 111887888 G T SLC9C1 Missense_Mutation p.L1025I 0.15 deleterious(0.04) probably_damaging(0.997) TCGA-IB-7651-01 3 111999618 111999618 C T SLC9C1 Missense_Mutation p.R34Q 0.16 tolerated(0.27) benign(0.006) TCGA-IB-7651-01 3 112253070 112253070 C T ATG3 Intron 0.17 TCGA-IB-7651-01 3 112299496 112299496 C T SLC35A5 Missense_Mutation p.R178C 0.16 deleterious(0.04) possibly_damaging(0.601) TCGA-IB-7651-01 3 112324236 112324236 G T CCDC80 3'UTR 0.21 TCGA-IB-7651-01 3 112358493 112358493 C T CCDC80 Missense_Mutation p.R87H 0.09 tolerated_low_confidence(0.5) benign(0.001) TCGA-IB-7651-01 3 112729539 112729539 T G C3orf17 Missense_Mutation p.E309A 0.18 tolerated(0.19) benign(0.015) TCGA-IB-7651-01 3 112736342 112736342 T G C3orf17 Missense_Mutation p.N72H 0.20 tolerated(0.48) benign(0.226) TCGA-IB-7651-01 3 112736400 112736400 C T C3orf17 Silent p.S52S 0.17 TCGA-IB-7651-01 3 112993336 112993336 G A BOC Missense_Mutation p.R450K 0.16 tolerated(1) benign(0.002) TCGA-IB-7651-01 3 112998114 112998114 G T BOC Missense_Mutation p.R611M 0.13 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 3 113115561 113115561 C T WDR52 Missense_Mutation p.G528E 0.17 deleterious(0.03) probably_damaging(0.995) TCGA-IB-7651-01 3 113120491 113120491 A G WDR52 Silent p.N422N 0.19 TCGA-IB-7651-01 3 113375352 113375352 G T KIAA2018 Missense_Mutation p.A1726D 0.18 benign(0.174) TCGA-IB-7651-01 3 11340278 11340278 G A ATG7 Missense_Mutation p.E37K 0.16 tolerated(0.67) benign(0.043) TCGA-IB-7651-01 3 11340313 11340313 G T ATG7 Missense_Mutation p.K48N 0.13 tolerated(0.22) benign(0.001) TCGA-IB-7651-01 3 113623099 113623099 G A GRAMD1C Missense_Mutation p.D257N 0.16 tolerated(0.16) benign(0.005) TCGA-IB-7651-01 3 113697720 113697720 G A KIAA1407 Silent p.I815I 0.19 TCGA-IB-7651-01 3 113720481 113720481 C A KIAA1407 Missense_Mutation p.Q708H 0.07 deleterious(0.02) possibly_damaging(0.81) TCGA-IB-7651-01 3 113804853 113804853 T G QTRTD1 3'UTR 0.18 TCGA-IB-7651-01 3 113858410 113858410 C A DRD3 Silent p.R220R 0.19 TCGA-IB-7651-01 3 113955909 113955909 G A ZNF80 Missense_Mutation p.R5C 0.21 tolerated(0.19) benign(0.002) TCGA-IB-7651-01 3 114018494 114018494 G A TIGIT Missense_Mutation p.A148T 0.15 tolerated(1) benign(0.002) TCGA-IB-7651-01 3 114058034 114058034 C T ZBTB20 Missense_Mutation p.A682T 0.17 tolerated(0.14) probably_damaging(0.956) TCGA-IB-7651-01 3 114069836 114069836 G A ZBTB20 Silent p.A363A 0.22 TCGA-IB-7651-01 3 114070337 114070337 G A ZBTB20 Silent p.N196N 0.14 TCGA-IB-7651-01 3 114070553 114070553 G A ZBTB20 Silent p.A124A 0.16 TCGA-IB-7651-01 3 114070695 114070695 C T ZBTB20 Missense_Mutation p.R77H 0.11 deleterious(0.01) probably_damaging(0.964) TCGA-IB-7651-01 3 115395064 115395064 G A GAP43 Missense_Mutation p.E115K 0.16 tolerated(0.11) possibly_damaging(0.554) TCGA-IB-7651-01 3 115395285 115395285 G A GAP43 Silent p.P188P 0.21 TCGA-IB-7651-01 3 115805293 115805293 C T LSAMP Missense_Mutation p.R89H 0.19 tolerated(0.08) possibly_damaging(0.734) TCGA-IB-7651-01 3 11596299 11596299 C T ATG7 Silent p.S698S 0.18 TCGA-IB-7651-01 3 11600188 11600188 C T VGLL4 Missense_Mutation p.D245N 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 11685060 11685060 T G VGLL4 5'UTR 0.19 TCGA-IB-7651-01 3 11888194 11888194 G A TAMM41 5'UTR 0.21 TCGA-IB-7651-01 3 118931561 118931561 G T B4GALT4 Intron 0.18 TCGA-IB-7651-01 3 119084170 119084170 C T ARHGAP31 Silent p.Y36Y 0.17 TCGA-IB-7651-01 3 119084190 119084190 A C ARHGAP31 Missense_Mutation p.E43A 0.18 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 3 119132980 119132980 G A ARHGAP31 Missense_Mutation p.S735N 0.18 tolerated(1) benign(0) TCGA-IB-7651-01 3 119133927 119133927 G T ARHGAP31 Missense_Mutation p.G1051W 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.874) TCGA-IB-7651-01 3 119156786 119156786 G A TMEM39A Missense_Mutation p.S247L 0.21 tolerated(0.42) possibly_damaging(0.532) TCGA-IB-7651-01 3 119171296 119171296 C A TMEM39A Nonsense_Mutation p.E140* 0.09 TCGA-IB-7651-01 3 119211264 119211264 A C POGLUT1 Missense_Mutation p.K386N 0.17 deleterious(0.01) possibly_damaging(0.481) TCGA-IB-7651-01 3 119263445 119263445 C A CD80 Missense_Mutation p.D124Y 0.18 deleterious(0) possibly_damaging(0.674) TCGA-IB-7651-01 3 119379151 119379151 G T POPDC2 Silent p.G40G 0.17 TCGA-IB-7651-01 3 119394074 119394074 G A COX17 Silent p.I38I 0.15 TCGA-IB-7651-01 3 119427480 119427480 T G MAATS1 Missense_Mutation p.D134E 0.07 tolerated(0.15) benign(0.031) TCGA-IB-7651-01 3 119533866 119533866 G A NR1I2 Missense_Mutation p.A318T 0.17 deleterious(0.02) probably_damaging(0.96) TCGA-IB-7651-01 3 119536008 119536008 C T NR1I2 Silent p.H457H 0.13 TCGA-IB-7651-01 3 119812208 119812208 C T GSK3B Missense_Mutation p.S25N 0.15 tolerated_low_confidence(0.48) benign(0) TCGA-IB-7651-01 3 120315332 120315332 G A NDUFB4 Silent p.Q42Q 0.16 TCGA-IB-7651-01 3 120347171 120347171 G A HGD 3'UTR 0.22 TCGA-IB-7651-01 3 120360511 120360511 C T HGD Nonsense_Mutation p.W268* 0.15 TCGA-IB-7651-01 3 120365164 120365164 A G HGD Missense_Mutation p.I200T 0.16 deleterious(0) probably_damaging(0.983) TCGA-IB-7651-01 3 120408549 120408549 C T RABL3 3'UTR 0.18 TCGA-IB-7651-01 3 120428633 120428633 C T RABL3 Missense_Mutation p.V88I 0.08 tolerated(0.91) benign(0.001) TCGA-IB-7651-01 3 120469705 120469705 G A GTF2E1 Silent p.V102V 0.16 TCGA-IB-7651-01 3 120499984 120499984 G T GTF2E1 Missense_Mutation p.E329D 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 120941850 120941850 C T STXBP5L Silent p.S319S 0.13 TCGA-IB-7651-01 3 120976165 120976165 G A STXBP5L Missense_Mutation p.S606N 0.19 tolerated(0.98) probably_damaging(0.995) TCGA-IB-7651-01 3 121126092 121126092 A G STXBP5L Missense_Mutation p.T888A 0.13 tolerated(0.18) benign(0.003) TCGA-IB-7651-01 3 121132069 121132069 C T STXBP5L Nonsense_Mutation p.R1029* 0.19 TCGA-IB-7651-01 3 121137938 121137938 A C STXBP5L Missense_Mutation p.Q1185H 0.19 deleterious(0) possibly_damaging(0.853) TCGA-IB-7651-01 3 121256050 121256050 C T POLQ Missense_Mutation p.V213M 0.15 deleterious(0.03) probably_damaging(0.97) TCGA-IB-7651-01 3 121258312 121258312 C T POLQ Missense_Mutation p.R200H 0.16 deleterious(0.02) possibly_damaging(0.88) TCGA-IB-7651-01 3 121341856 121341856 C T FBXO40 Missense_Mutation p.P527L 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 121341875 121341875 A G FBXO40 Silent p.K533K 0.18 TCGA-IB-7651-01 3 121386347 121386347 G T GOLGB1 Missense_Mutation p.S3182Y 0.19 possibly_damaging(0.8) TCGA-IB-7651-01 3 121400548 121400548 C T GOLGB1 Silent p.E2953E 0.19 TCGA-IB-7651-01 3 121410400 121410400 T G GOLGB1 Missense_Mutation p.D2604A 0.19 benign(0.016) TCGA-IB-7651-01 3 121414124 121414124 G T GOLGB1 Missense_Mutation p.S1749Y 0.05 benign(0.382) TCGA-IB-7651-01 3 121414270 121414270 C T GOLGB1 Silent p.E1700E 0.16 TCGA-IB-7651-01 3 121417334 121417334 G A GOLGB1 Missense_Mutation p.A679V 0.08 benign(0.004) TCGA-IB-7651-01 3 121489343 121489343 G A IQCB1 Missense_Mutation p.A549V 0.17 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 3 121509063 121509063 C A IQCB1 Splice_Site p.X329_splice 0.18 TCGA-IB-7651-01 3 121810499 121810499 T C CD86 Splice_Site p.X22_splice 0.18 TCGA-IB-7651-01 3 121972926 121972926 C T CASR 5'UTR 0.20 TCGA-IB-7651-01 3 121980530 121980530 C T CASR Silent p.D216D 0.18 TCGA-IB-7651-01 3 121980656 121980656 G A CASR Silent p.V258V 0.20 TCGA-IB-7651-01 3 122002644 122002644 G A CASR Missense_Mutation p.A625T 0.16 tolerated(0.39) possibly_damaging(0.699) TCGA-IB-7651-01 3 122002933 122002933 C T CASR Missense_Mutation p.P721L 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 12203526 12203526 C A TIMP4 5'Flank 0.17 TCGA-IB-7651-01 3 122126163 122126163 G A FAM162A Missense_Mutation p.R100Q 0.09 deleterious(0.03) probably_damaging(0.99) TCGA-IB-7651-01 3 122134224 122134224 G T WDR5B Missense_Mutation p.P51H 0.17 deleterious(0.03) benign(0.378) TCGA-IB-7651-01 3 122274783 122274783 G T PARP9 Missense_Mutation p.L114M 0.22 deleterious(0) probably_damaging(0.945) TCGA-IB-7651-01 3 122288313 122288313 C T DTX3L Silent p.G459G 0.16 TCGA-IB-7651-01 3 122353966 122353966 T G PARP15 Missense_Mutation p.F558V 0.20 deleterious(0) probably_damaging(0.92) TCGA-IB-7651-01 3 122405935 122405935 G A PARP14 Silent p.K110K 0.09 TCGA-IB-7651-01 3 122411328 122411328 A C PARP14 Missense_Mutation p.D179A 0.22 deleterious(0.05) benign(0.086) TCGA-IB-7651-01 3 122420074 122420074 G A PARP14 Silent p.P891P 0.18 TCGA-IB-7651-01 3 122422767 122422767 G A PARP14 Missense_Mutation p.R1087H 0.20 tolerated(0.33) benign(0.001) TCGA-IB-7651-01 3 122433238 122433238 A C PARP14 Missense_Mutation p.K1321T 0.13 deleterious(0.02) benign(0.056) TCGA-IB-7651-01 3 122446723 122446723 C T PARP14 Missense_Mutation p.A1669V 0.20 tolerated(0.13) benign(0.196) TCGA-IB-7651-01 3 122459627 122459627 G T HSPBAP1 Silent p.I344I 0.17 TCGA-IB-7651-01 3 122459673 122459673 A C HSPBAP1 Missense_Mutation p.V329G 0.04 deleterious(0) possibly_damaging(0.774) TCGA-IB-7651-01 3 122474183 122474183 A C HSPBAP1 Missense_Mutation p.V222G 0.09 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 3 122629748 122629748 T C SEMA5B Missense_Mutation p.H1133R 0.07 tolerated(0.17) probably_damaging(0.999) TCGA-IB-7651-01 3 122631763 122631763 C T SEMA5B Silent p.E938E 0.20 TCGA-IB-7651-01 3 122632714 122632714 C T SEMA5B Missense_Mutation p.R762Q 0.20 tolerated(0.09) probably_damaging(0.999) TCGA-IB-7651-01 3 122634371 122634371 C T SEMA5B Missense_Mutation p.R689Q 0.19 tolerated(0.13) benign(0.177) TCGA-IB-7651-01 3 122642572 122642572 G A SEMA5B Silent p.C442C 0.17 TCGA-IB-7651-01 3 122646797 122646797 G T SEMA5B Silent p.P284P 0.16 TCGA-IB-7651-01 3 123008674 123008674 G A ADCY5 Missense_Mutation p.A1152V 0.19 tolerated(0.15) probably_damaging(0.951) TCGA-IB-7651-01 3 123044174 123044174 G A ADCY5 Missense_Mutation p.R695W 0.20 deleterious(0.01) probably_damaging(0.97) TCGA-IB-7651-01 3 123047580 123047580 G A ADCY5 Silent p.C572C 0.18 TCGA-IB-7651-01 3 123049816 123049816 G A ADCY5 Silent p.C522C 0.19 TCGA-IB-7651-01 3 123051430 123051430 C T ADCY5 Missense_Mutation p.R500H 0.21 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 3 123219521 123219521 G T PTPLB Missense_Mutation p.L175M 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-IB-7651-01 3 123337592 123337592 C T MYLK Silent p.E1798E 0.17 TCGA-IB-7651-01 3 123339123 123339123 G T MYLK Missense_Mutation p.L1767I 0.17 tolerated(0.13) benign(0.186) TCGA-IB-7651-01 3 123348342 123348342 T G MYLK Missense_Mutation p.N1698T 0.20 deleterious(0.01) benign(0.012) TCGA-IB-7651-01 3 123367851 123367851 G A MYLK Missense_Mutation p.S1461F 0.18 deleterious(0) benign(0.001) TCGA-IB-7651-01 3 123411611 123411611 G A MYLK Missense_Mutation p.A1179V 0.18 tolerated(0.07) possibly_damaging(0.491) TCGA-IB-7651-01 3 123427586 123427586 C T MYLK Missense_Mutation p.S700N 0.17 deleterious(0.04) benign(0.149) TCGA-IB-7651-01 3 123440981 123440981 C T MYLK Missense_Mutation p.V600I 0.10 tolerated(0.09) benign(0.029) TCGA-IB-7651-01 3 123452821 123452821 G T MYLK Missense_Mutation p.T341N 0.08 tolerated(0.09) benign(0.007) TCGA-IB-7651-01 3 123665936 123665936 T C CCDC14 Silent p.T312T 0.16 TCGA-IB-7651-01 3 124053224 124053224 T C KALRN Missense_Mutation p.L508P 0.16 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 3 124117671 124117671 C A KALRN Missense_Mutation p.L765M 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 124211723 124211723 G T KALRN Missense_Mutation p.S1607I 0.21 deleterious(0.03) benign(0.085) TCGA-IB-7651-01 3 124281736 124281736 C T KALRN Missense_Mutation p.A32V 0.19 deleterious(0.03) probably_damaging(0.993) TCGA-IB-7651-01 3 124380766 124380766 G A KALRN Silent p.Q203Q 0.16 TCGA-IB-7651-01 3 124413317 124413317 A C AC080008.1 3'Flank 0.15 TCGA-IB-7651-01 3 124454055 124454055 T C UMPS Missense_Mutation p.I91T 0.15 tolerated(0.24) benign(0.196) TCGA-IB-7651-01 3 124456949 124456949 C T UMPS Missense_Mutation p.T282I 0.15 deleterious(0.02) possibly_damaging(0.905) TCGA-IB-7651-01 3 124527965 124527965 C A ITGB5 Missense_Mutation p.Q389H 0.18 tolerated(0.37) benign(0.008) TCGA-IB-7651-01 3 124536539 124536539 G A ITGB5 Missense_Mutation p.P353S 0.16 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 3 124578178 124578178 C A ITGB5 Missense_Mutation p.S91I 0.20 deleterious(0) possibly_damaging(0.723) TCGA-IB-7651-01 3 124739746 124739746 G A HEG1 Missense_Mutation p.S381L 0.23 tolerated(0.49) benign(0.001) TCGA-IB-7651-01 3 124746246 124746246 G A HEG1 Missense_Mutation p.A239V 0.12 tolerated_low_confidence(0.37) benign(0) TCGA-IB-7651-01 3 124748188 124748188 G A HEG1 Missense_Mutation p.S154L 0.18 tolerated_low_confidence(0.24) benign(0.005) TCGA-IB-7651-01 3 125266388 125266388 G T OSBPL11 Missense_Mutation p.P568H 0.16 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 3 125286413 125286413 T C OSBPL11 Silent p.Q231Q 0.10 TCGA-IB-7651-01 3 125313703 125313703 T C OSBPL11 5'UTR 0.14 TCGA-IB-7651-01 3 12570396 12570396 G A TSEN2 Missense_Mutation p.R370Q 0.17 deleterious(0) benign(0.095) TCGA-IB-7651-01 3 125725380 125725380 G T SLC41A3 Missense_Mutation p.A465D 0.17 tolerated_low_confidence(0.22) benign(0.004) TCGA-IB-7651-01 3 125725383 125725383 G T SLC41A3 Missense_Mutation p.A464D 0.19 tolerated_low_confidence(0.17) benign(0.001) TCGA-IB-7651-01 3 125735601 125735601 G T SLC41A3 Missense_Mutation p.P288Q 0.17 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 3 12574290 12574290 T G TSEN2 3'UTR 0.18 TCGA-IB-7651-01 3 125775449 125775449 C A SLC41A3 Intron 0.18 TCGA-IB-7651-01 3 125824589 125824589 G T ALDH1L1 Missense_Mutation p.S888Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 125833403 125833403 C A ALDH1L1 Missense_Mutation p.Q703H 0.19 deleterious(0.01) benign(0.28) TCGA-IB-7651-01 3 125872144 125872144 C T ALDH1L1 Intron 0.17 TCGA-IB-7651-01 3 125873462 125873462 C T ALDH1L1 Missense_Mutation p.A229T 0.19 tolerated_low_confidence(0.19) probably_damaging(0.998) TCGA-IB-7651-01 3 12613662 12613662 G A MKRN2 Silent p.P144P 0.18 TCGA-IB-7651-01 3 126138953 126138953 G T CCDC37 Missense_Mutation p.Q321H 0.22 tolerated(0.08) benign(0.017) TCGA-IB-7651-01 3 126154401 126154401 G T CCDC37 Splice_Site p.X543_splice 0.19 TCGA-IB-7651-01 3 12616471 12616471 C T MKRN2 Missense_Mutation p.R275W 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 126185060 126185060 C T ZXDC Missense_Mutation p.R460K 0.05 tolerated(1) probably_damaging(0.998) TCGA-IB-7651-01 3 126201100 126201100 C T UROC1 3'UTR 0.24 TCGA-IB-7651-01 3 126208217 126208217 G A UROC1 Missense_Mutation p.A597V 0.16 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 3 126211352 126211352 C T UROC1 Missense_Mutation p.G566D 0.21 deleterious(0) possibly_damaging(0.825) TCGA-IB-7651-01 3 12626108 12626108 G T RAF1 Silent p.R618R 0.16 TCGA-IB-7651-01 3 126268637 126268637 G A C3orf22 3'UTR 0.21 TCGA-IB-7651-01 3 126290881 126290881 G A TXNRD3NB Silent p.S132S 0.19 TCGA-IB-7651-01 3 126291446 126291446 C T TXNRD3NB 5'UTR 0.19 TCGA-IB-7651-01 3 126710388 126710388 G A PLXNA1 Silent p.T452T 0.40 TCGA-IB-7651-01 3 126733350 126733350 C T PLXNA1 Silent p.G878G 0.21 TCGA-IB-7651-01 3 126735415 126735415 G A PLXNA1 Missense_Mutation p.A1024T 0.16 tolerated(0.29) benign(0.01) TCGA-IB-7651-01 3 126735821 126735821 C A PLXNA1 Missense_Mutation p.L1073M 0.15 deleterious(0) probably_damaging(0.979) TCGA-IB-7651-01 3 126736699 126736699 C T PLXNA1 Silent p.C1208C 0.15 TCGA-IB-7651-01 3 126741028 126741028 G A PLXNA1 Missense_Mutation p.S1380N 0.17 tolerated(0.51) possibly_damaging(0.803) TCGA-IB-7651-01 3 126741119 126741119 G T PLXNA1 Missense_Mutation p.Q1410H 0.17 tolerated(0.2) benign(0.075) TCGA-IB-7651-01 3 126752801 126752801 C T PLXNA1 Missense_Mutation p.R1878W 0.16 deleterious(0) possibly_damaging(0.852) TCGA-IB-7651-01 3 127295733 127295733 G T TPRA1 Missense_Mutation p.L117M 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 127318161 127318161 G A MCM2 Missense_Mutation p.E3K 0.18 deleterious_low_confidence(0.03) benign(0.292) TCGA-IB-7651-01 3 127339940 127339940 C T MCM2 Missense_Mutation p.R825W 0.18 deleterious(0) possibly_damaging(0.582) TCGA-IB-7651-01 3 127394818 127394818 C T ABTB1 Missense_Mutation p.R61C 0.14 deleterious(0) probably_damaging(0.946) TCGA-IB-7651-01 3 127454569 127454569 G T MGLL Intron 0.18 TCGA-IB-7651-01 3 127646814 127646814 G A KBTBD12 Silent p.L426L 0.20 TCGA-IB-7651-01 3 127775659 127775659 G A SEC61A1 Missense_Mutation p.A110T 0.08 tolerated(0.11) benign(0.124) TCGA-IB-7651-01 3 127965783 127965783 C A EEFSEC Missense_Mutation p.L141M 0.18 tolerated(1) benign(0.136) TCGA-IB-7651-01 3 128181322 128181322 C T DNAJB8 3'UTR 0.19 TCGA-IB-7651-01 3 128181722 128181722 G A DNAJB8 Missense_Mutation p.R123C 0.15 tolerated(0.17) benign(0.003) TCGA-IB-7651-01 3 128204709 128204709 G A GATA2 Silent p.H244H 0.07 TCGA-IB-7651-01 3 128514202 128514202 G A RAB7A Splice_Site 0.16 TCGA-IB-7651-01 3 12854865 12854865 G T CAND2 Missense_Mutation p.E328D 0.20 tolerated(0.54) benign(0.012) TCGA-IB-7651-01 3 12856659 12856659 C T CAND2 Silent p.S342S 0.19 TCGA-IB-7651-01 3 128621399 128621399 G A ACAD9 Missense_Mutation p.A296T 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 128706495 128706495 C T KIAA1257 Missense_Mutation p.G211S 0.17 tolerated(0.34) benign(0.164) TCGA-IB-7651-01 3 128711980 128711980 C A KIAA1257 Missense_Mutation p.E56D 0.19 tolerated(0.08) benign(0.021) TCGA-IB-7651-01 3 12875277 12875277 G T CAND2 Missense_Mutation p.Q1169H 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 128780850 128780850 G A GP9 Missense_Mutation p.D90N 0.18 deleterious(0.04) possibly_damaging(0.9) TCGA-IB-7651-01 3 128780912 128780912 G T GP9 Missense_Mutation p.Q110H 0.10 tolerated(0.68) benign(0.001) TCGA-IB-7651-01 3 128810043 128810043 C A RAB43 Nonsense_Mutation p.E179* 0.15 TCGA-IB-7651-01 3 12881911 12881911 A G RPL32 Intron 0.21 TCGA-IB-7651-01 3 128889940 128889940 G A CNBP Missense_Mutation p.T135I 0.15 tolerated(0.05) possibly_damaging(0.732) TCGA-IB-7651-01 3 128890570 128890570 G A CNBP Nonsense_Mutation p.R11* 0.21 TCGA-IB-7651-01 3 128890615 128890615 C A CNBP Splice_Site 0.09 TCGA-IB-7651-01 3 128991698 128991698 A C COPG1 Missense_Mutation p.D736A 0.14 deleterious(0) probably_damaging(0.946) TCGA-IB-7651-01 3 128998687 128998687 T C HMCES Missense_Mutation p.Y38H 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 129200409 129200409 G A IFT122 Missense_Mutation p.V560I 0.17 tolerated(0.41) benign(0.002) TCGA-IB-7651-01 3 129238491 129238491 G T IFT122 Missense_Mutation p.K1235N 0.18 tolerated(0.38) possibly_damaging(0.755) TCGA-IB-7651-01 3 129238526 129238526 G A IFT122 Missense_Mutation p.R1247H 0.17 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 3 129281956 129281956 T C PLXND1 Missense_Mutation p.N1550S 0.21 deleterious(0.01) probably_damaging(0.994) TCGA-IB-7651-01 3 129284287 129284287 C T PLXND1 Missense_Mutation p.A1473T 0.19 deleterious(0.04) probably_damaging(0.966) TCGA-IB-7651-01 3 129305525 129305525 C T PLXND1 Missense_Mutation p.R509Q 0.21 tolerated(0.58) benign(0.01) TCGA-IB-7651-01 3 129370342 129370342 G T TMCC1 Missense_Mutation p.F648L 0.14 tolerated(0.67) benign(0.012) TCGA-IB-7651-01 3 129373889 129373889 G A TMCC1 Silent p.I523I 0.21 TCGA-IB-7651-01 3 129389812 129389812 G A TMCC1 Missense_Mutation p.T291I 0.20 deleterious(0.01) possibly_damaging(0.88) TCGA-IB-7651-01 3 12957129 12957129 G A IQSEC1 Nonsense_Mutation p.Q723* 0.19 TCGA-IB-7651-01 3 12962091 12962091 C T IQSEC1 Missense_Mutation p.R634H 0.16 deleterious(0.03) probably_damaging(0.96) TCGA-IB-7651-01 3 129695746 129695746 G A TRH Missense_Mutation p.R139Q 0.18 deleterious(0.04) possibly_damaging(0.56) TCGA-IB-7651-01 3 12978092 12978092 G A IQSEC1 Missense_Mutation p.R156C 0.15 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 130095372 130095372 C A COL6A5 Silent p.T120T 0.26 TCGA-IB-7651-01 3 130285742 130285742 C A COL6A6 Nonsense_Mutation p.Y493* 0.20 TCGA-IB-7651-01 3 130287198 130287198 C T COL6A6 Silent p.G717G 0.16 TCGA-IB-7651-01 3 130292992 130292992 T C COL6A6 Missense_Mutation p.F1057S 0.23 tolerated(0.71) possibly_damaging(0.685) TCGA-IB-7651-01 3 130405110 130405110 C T PIK3R4 Silent p.K1140K 0.19 TCGA-IB-7651-01 3 130435274 130435274 G A PIK3R4 Missense_Mutation p.A766V 0.16 tolerated(0.15) benign(0.328) TCGA-IB-7651-01 3 130454718 130454718 C A PIK3R4 Nonsense_Mutation p.E288* 0.18 TCGA-IB-7651-01 3 130675022 130675022 A C ATP2C1 Silent p.I311I 0.23 TCGA-IB-7651-01 3 130716497 130716497 G A ATP2C1 Missense_Mutation p.R798H 0.16 deleterious(0) probably_damaging(0.961) TCGA-IB-7651-01 3 130851590 130851590 A G NEK11 Missense_Mutation p.R153G 0.12 deleterious(0.04) benign(0.17) TCGA-IB-7651-01 3 130871281 130871281 G A NEK11 Missense_Mutation p.A233T 0.20 tolerated(1) benign(0.004) TCGA-IB-7651-01 3 130884283 130884283 G T NEK11 Nonsense_Mutation p.E366* 0.17 TCGA-IB-7651-01 3 130992362 130992362 A C NEK11 Silent p.P554P 0.15 TCGA-IB-7651-01 3 131081097 131081097 A G NUDT16P1 RNA 0.21 TCGA-IB-7651-01 3 131102014 131102014 C T NUDT16 3'UTR 0.18 TCGA-IB-7651-01 3 131198024 131198024 C A MRPL3 Intron 0.21 TCGA-IB-7651-01 3 131261625 131261625 G T CPNE4 Missense_Mutation p.L439M 0.22 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 131274360 131274360 C A CPNE4 Missense_Mutation p.R366M 0.16 deleterious(0) benign(0.185) TCGA-IB-7651-01 3 132169692 132169692 G A DNAJC13 Splice_Site p.X179_splice 0.19 TCGA-IB-7651-01 3 132180039 132180039 A C DNAJC13 Missense_Mutation p.K568T 0.18 deleterious(0.01) benign(0.103) TCGA-IB-7651-01 3 132277901 132277901 C A ACAD11 Missense_Mutation p.A753S 0.22 deleterious(0) probably_damaging(0.961) TCGA-IB-7651-01 3 132294689 132294689 G A ACAD11 Missense_Mutation p.A643V 0.20 deleterious(0.02) benign(0.269) TCGA-IB-7651-01 3 132320091 132320091 G A ACKR4 Missense_Mutation p.A284T 0.09 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 3 132358437 132358437 G A ACAD11 Silent p.L201L 0.18 TCGA-IB-7651-01 3 132400647 132400647 G A NPHP3 3'UTR 0.18 TCGA-IB-7651-01 3 132423136 132423136 A C NPHP3 Missense_Mutation p.F477C 0.19 tolerated(0.24) benign(0) TCGA-IB-7651-01 3 133118901 133118901 C A BFSP2 5'UTR 0.18 TCGA-IB-7651-01 3 133118967 133118967 G A BFSP2 Missense_Mutation p.A14T 0.18 tolerated_low_confidence(0.22) benign(0.006) TCGA-IB-7651-01 3 133119358 133119358 C A BFSP2 Missense_Mutation p.A144D 0.20 deleterious(0) probably_damaging(0.939) TCGA-IB-7651-01 3 133320197 133320197 G A TOPBP1 Missense_Mutation p.A1489V 0.27 deleterious(0) benign(0.025) TCGA-IB-7651-01 3 133337217 133337217 A G TOPBP1 Silent p.I1144I 0.21 TCGA-IB-7651-01 3 133341974 133341974 C T TOPBP1 Missense_Mutation p.A1047T 0.11 tolerated(0.38) benign(0.002) TCGA-IB-7651-01 3 133375563 133375563 G T TOPBP1 Missense_Mutation p.L168I 0.19 deleterious(0.02) probably_damaging(0.916) TCGA-IB-7651-01 3 133473446 133473446 G A TF Missense_Mutation p.A145T 0.18 deleterious(0.02) benign(0.347) TCGA-IB-7651-01 3 133547691 133547691 C T RAB6B Missense_Mutation p.D190N 0.18 tolerated(0.06) benign(0.01) TCGA-IB-7651-01 3 13361358 13361358 G A NUP210 Missense_Mutation p.S1763F 0.16 deleterious(0.04) probably_damaging(0.976) TCGA-IB-7651-01 3 133654654 133654654 G A SLCO2A1 Missense_Mutation p.A593V 0.16 tolerated(0.69) benign(0.352) TCGA-IB-7651-01 3 133674026 133674026 G A SLCO2A1 Missense_Mutation p.R137C 0.20 deleterious(0.04) possibly_damaging(0.773) TCGA-IB-7651-01 3 13381381 13381381 C A NUP210 Missense_Mutation p.E1148D 0.24 tolerated(0.78) benign(0.071) TCGA-IB-7651-01 3 134080624 134080624 C T AMOTL2 Silent p.E435E 0.18 TCGA-IB-7651-01 3 134084677 134084677 C T AMOTL2 Missense_Mutation p.A421T 0.16 tolerated(0.17) probably_damaging(0.92) TCGA-IB-7651-01 3 134226043 134226043 G A CEP63 Missense_Mutation p.R46H 0.20 deleterious(0) benign(0.017) TCGA-IB-7651-01 3 134322952 134322952 G A KY Silent p.S485S 0.18 TCGA-IB-7651-01 3 134322979 134322979 G A KY Silent p.S476S 0.10 TCGA-IB-7651-01 3 134362215 134362215 A G KY Silent p.L69L 0.18 TCGA-IB-7651-01 3 135721855 135721855 C A PPP2R3A Missense_Mutation p.S505R 0.18 tolerated_low_confidence(0.36) probably_damaging(0.986) TCGA-IB-7651-01 3 135722249 135722249 T G PPP2R3A Missense_Mutation p.L637V 0.18 tolerated(1) benign(0.002) TCGA-IB-7651-01 3 135741936 135741936 C T PPP2R3A Intron 0.17 TCGA-IB-7651-01 3 135822208 135822208 C T PPP2R3A Missense_Mutation p.A1071V 0.21 deleterious(0.01) probably_damaging(0.99) TCGA-IB-7651-01 3 135870542 135870542 G A MSL2 Missense_Mutation p.T394I 0.18 tolerated(0.42) benign(0.124) TCGA-IB-7651-01 3 136057080 136057080 A G STAG1 3'UTR 0.19 TCGA-IB-7651-01 3 136068110 136068110 G A STAG1 Missense_Mutation p.T1054I 0.21 tolerated(0.17) benign(0.04) TCGA-IB-7651-01 3 136082224 136082224 A G STAG1 Missense_Mutation p.I924T 0.16 deleterious(0.02) probably_damaging(0.917) TCGA-IB-7651-01 3 136664506 136664506 G A NCK1 Missense_Mutation p.R103H 0.07 tolerated(0.08) possibly_damaging(0.581) TCGA-IB-7651-01 3 136664529 136664529 G A NCK1 Missense_Mutation p.A111T 0.19 deleterious(0) probably_damaging(0.919) TCGA-IB-7651-01 3 136667191 136667191 C T NCK1 Missense_Mutation p.R344C 0.18 deleterious(0.02) benign(0.103) TCGA-IB-7651-01 3 136676841 136676841 C T IL20RB 5'UTR 0.14 TCGA-IB-7651-01 3 137783593 137783593 C T DZIP1L Silent p.S673S 0.17 TCGA-IB-7651-01 3 137787054 137787054 C T DZIP1L Missense_Mutation p.A591T 0.20 tolerated(1) benign(0) TCGA-IB-7651-01 3 137787193 137787193 G A DZIP1L Silent p.S544S 0.18 TCGA-IB-7651-01 3 137893465 137893465 T C DBR1 Missense_Mutation p.Y58C 0.23 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 138007892 138007892 C T ARMC8 Silent p.G594G 0.18 TCGA-IB-7651-01 3 138191410 138191410 G A ESYT3 Missense_Mutation p.S649N 0.19 tolerated(0.22) benign(0.002) TCGA-IB-7651-01 3 138192394 138192394 C T ESYT3 Nonsense_Mutation p.R752* 0.16 TCGA-IB-7651-01 3 138195085 138195085 T C ESYT3 Missense_Mutation p.M830T 0.19 deleterious(0.02) possibly_damaging(0.486) TCGA-IB-7651-01 3 138195703 138195703 G T ESYT3 3'UTR 0.20 TCGA-IB-7651-01 3 138218938 138218938 T G CEP70 Intron 0.19 TCGA-IB-7651-01 3 138669185 138669185 G A C3orf72 Missense_Mutation p.R100H 0.21 tolerated_low_confidence(0.17) benign(0.108) TCGA-IB-7651-01 3 138669383 138669383 C T C3orf72 Missense_Mutation p.A166V 0.21 tolerated_low_confidence(0.2) benign(0.021) TCGA-IB-7651-01 3 139097937 139097937 G A COPB2 Missense_Mutation p.R103C 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 139195235 139195235 C T RBP2 Missense_Mutation p.A23T 0.21 deleterious(0.02) possibly_damaging(0.905) TCGA-IB-7651-01 3 139297773 139297773 G A NMNAT3 Silent p.I41I 0.14 TCGA-IB-7651-01 3 1394015 1394015 C A CNTN6 Missense_Mutation p.L458I 0.16 tolerated(1) benign(0.019) TCGA-IB-7651-01 3 140277580 140277580 A C CLSTN2 Missense_Mutation p.D641A 0.16 tolerated(0.64) benign(0.002) TCGA-IB-7651-01 3 140692672 140692672 G T SLC25A36 Missense_Mutation p.E189D 0.16 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 3 140785480 140785480 C T SPSB4 Silent p.L178L 0.17 TCGA-IB-7651-01 3 140785540 140785540 C T SPSB4 Silent p.G198G 0.13 TCGA-IB-7651-01 3 141163088 141163088 G T ZBTB38 Missense_Mutation p.D620Y 0.15 deleterious(0.03) benign(0.204) TCGA-IB-7651-01 3 141163405 141163405 G A ZBTB38 Silent p.S725S 0.21 TCGA-IB-7651-01 3 141163589 141163589 G A ZBTB38 Missense_Mutation p.E787K 0.13 deleterious(0.03) benign(0.2) TCGA-IB-7651-01 3 141163596 141163596 C T ZBTB38 Missense_Mutation p.P789L 0.19 tolerated(0.46) benign(0.001) TCGA-IB-7651-01 3 141291549 141291549 A C RASA2 Missense_Mutation p.K423T 0.18 deleterious(0) possibly_damaging(0.634) TCGA-IB-7651-01 3 1414156 1414156 G T CNTN6 Nonsense_Mutation p.G556* 0.18 TCGA-IB-7651-01 3 141499500 141499500 G T GRK7 Missense_Mutation p.Q299H 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 141526556 141526556 T C GRK7 Missense_Mutation p.W374R 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 14154654 14154654 T C CHCHD4 Silent p.P67P 0.18 TCGA-IB-7651-01 3 141644374 141644374 T C ATP1B3 Missense_Mutation p.V224A 0.19 tolerated(0.18) benign(0.03) TCGA-IB-7651-01 3 14187592 14187592 C A XPC Missense_Mutation p.S891I 0.20 deleterious(0) probably_damaging(0.947) TCGA-IB-7651-01 3 14190224 14190224 C A XPC Missense_Mutation p.R753L 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 14207064 14207064 C A XPC Missense_Mutation p.A215S 0.22 tolerated(0.06) probably_damaging(0.927) TCGA-IB-7651-01 3 142095328 142095328 T C XRN1 Missense_Mutation p.R942G 0.20 tolerated(0.06) benign(0) TCGA-IB-7651-01 3 142168272 142168272 C T ATR Silent p.%3D 0.18 TCGA-IB-7651-01 3 142186836 142186836 C T ATR Silent p.E2209E 0.07 TCGA-IB-7651-01 3 142212021 142212021 C T ATR Missense_Mutation p.E2011K 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 142232395 142232395 G T ATR Missense_Mutation p.P1530Q 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 142241618 142241618 C T ATR Silent p.A1406A 0.08 TCGA-IB-7651-01 3 142269047 142269047 C A ATR Missense_Mutation p.R968I 0.16 deleterious(0.01) possibly_damaging(0.797) TCGA-IB-7651-01 3 142281779 142281779 G T ATR Missense_Mutation p.D155E 0.15 tolerated_low_confidence(0.23) benign(0.37) TCGA-IB-7651-01 3 142408575 142408575 C T PLS1 Missense_Mutation p.A366V 0.19 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 3 142430842 142430842 T C PLS1 Missense_Mutation p.I628T 0.20 tolerated_low_confidence(0.07) benign(0.017) TCGA-IB-7651-01 3 142443464 142443464 C A TRPC1 Silent p.S21S 0.25 TCGA-IB-7651-01 3 142467232 142467232 C T TRPC1 Missense_Mutation p.P188S 0.21 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 3 1424997 1424997 G T CNTN6 Nonsense_Mutation p.G808* 0.17 TCGA-IB-7651-01 3 142522866 142522866 C T TRPC1 Missense_Mutation p.A602V 0.18 tolerated(1) probably_damaging(0.998) TCGA-IB-7651-01 3 142537272 142537272 C T PCOLCE2 Missense_Mutation p.D385N 0.21 tolerated(0.25) benign(0.088) TCGA-IB-7651-01 3 142681742 142681742 G A PAQR9 Missense_Mutation p.S146L 0.12 deleterious(0) possibly_damaging(0.532) TCGA-IB-7651-01 3 142681855 142681855 G A PAQR9 Silent p.S108S 0.23 TCGA-IB-7651-01 3 142739482 142739482 G A U2SURP Missense_Mutation p.R227K 0.10 tolerated(0.93) benign(0.122) TCGA-IB-7651-01 3 142840537 142840537 G T CHST2 Missense_Mutation p.E293D 0.24 tolerated(0.09) benign(0.026) TCGA-IB-7651-01 3 143691407 143691407 G A C3orf58 Missense_Mutation p.G78D 0.16 tolerated(0.35) benign(0.003) TCGA-IB-7651-01 3 143704517 143704517 G A C3orf58 Missense_Mutation p.A264T 0.19 deleterious(0.01) possibly_damaging(0.891) TCGA-IB-7651-01 3 143704586 143704586 G A C3orf58 Missense_Mutation p.D287N 0.09 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 143708593 143708593 G A C3orf58 Silent p.E401E 0.18 TCGA-IB-7651-01 3 14489097 14489097 C A SLC6A6 Silent p.G124G 0.19 TCGA-IB-7651-01 3 14489241 14489241 G A SLC6A6 Missense_Mutation p.M172I 0.04 tolerated(0.18) benign(0.001) TCGA-IB-7651-01 3 14518771 14518771 G T SLC6A6 Missense_Mutation p.R423M 0.20 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 3 14518786 14518786 G A SLC6A6 Missense_Mutation p.R428Q 0.21 deleterious(0.01) probably_damaging(0.986) TCGA-IB-7651-01 3 14518805 14518805 C T SLC6A6 Silent p.F434F 0.21 TCGA-IB-7651-01 3 14547207 14547207 G A GRIP2 RNA 0.20 TCGA-IB-7651-01 3 14548392 14548392 C T GRIP2 RNA 0.17 TCGA-IB-7651-01 3 14566999 14566999 C T GRIP2 RNA 0.10 TCGA-IB-7651-01 3 145803071 145803071 A C PLOD2 Intron 0.19 TCGA-IB-7651-01 3 145912064 145912064 C T PLSCR4 3'UTR 0.23 TCGA-IB-7651-01 3 145912128 145912128 C A PLSCR4 3'UTR 0.08 TCGA-IB-7651-01 3 145912991 145912991 C T PLSCR4 Missense_Mutation p.A289T 0.17 tolerated(0.27) probably_damaging(0.994) TCGA-IB-7651-01 3 146173186 146173186 A G PLSCR2 Missense_Mutation p.I127T 0.17 deleterious(0) possibly_damaging(0.885) TCGA-IB-7651-01 3 14703105 14703105 G A CCDC174 Missense_Mutation p.E126K 0.04 tolerated(0.35) benign(0.005) TCGA-IB-7651-01 3 147108745 147108745 G A ZIC4 Missense_Mutation p.A376V 0.14 tolerated_low_confidence(0.39) benign(0.001) TCGA-IB-7651-01 3 147108773 147108773 A G ZIC4 Missense_Mutation p.S367P 0.10 tolerated_low_confidence(1) benign(0) TCGA-IB-7651-01 3 147108846 147108846 C T ZIC4 Silent p.P342P 0.19 TCGA-IB-7651-01 3 147108909 147108909 G A ZIC4 Silent p.C321C 0.19 TCGA-IB-7651-01 3 147113984 147113984 C T ZIC4 Missense_Mutation p.A165T 0.22 deleterious(0) probably_damaging(0.972) TCGA-IB-7651-01 3 147114031 147114031 C T ZIC4 Missense_Mutation p.G149E 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-IB-7651-01 3 147114110 147114110 C T ZIC4 Missense_Mutation p.A123T 0.20 tolerated(0.14) benign(0.104) TCGA-IB-7651-01 3 147127891 147127891 G A ZIC1 5'UTR 0.12 TCGA-IB-7651-01 3 147128517 147128517 G A ZIC1 Silent p.A206A 0.24 TCGA-IB-7651-01 3 147128543 147128543 G A ZIC1 Missense_Mutation p.R215H 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 147131179 147131179 G A ZIC1 Silent p.P395P 0.18 TCGA-IB-7651-01 3 147131305 147131305 G A ZIC1 Silent p.A437A 0.18 TCGA-IB-7651-01 3 14798938 14798938 G A C3orf20 Silent p.P667P 0.22 TCGA-IB-7651-01 3 148575278 148575278 C A CPB1 Missense_Mutation p.A339D 0.15 tolerated(0.26) possibly_damaging(0.534) TCGA-IB-7651-01 3 14862336 14862336 G A FGD5 Silent p.S586S 0.20 TCGA-IB-7651-01 3 148868428 148868428 A G HPS3 Silent p.A402A 0.16 TCGA-IB-7651-01 3 148880586 148880586 A G HPS3 Missense_Mutation p.K801R 0.21 tolerated(0.91) probably_damaging(0.953) TCGA-IB-7651-01 3 148895751 148895751 A G CP Missense_Mutation p.M965T 0.18 tolerated(0.05) benign(0.057) TCGA-IB-7651-01 3 148925405 148925405 C A CP Splice_Site p.X261_splice 0.16 TCGA-IB-7651-01 3 148939510 148939510 A G CP Missense_Mutation p.Y24H 0.21 deleterious(0.05) possibly_damaging(0.896) TCGA-IB-7651-01 3 149042779 149042779 C T TM4SF18 Missense_Mutation p.G100R 0.18 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 3 149238588 149238588 G T WWTR1 3'UTR 0.17 TCGA-IB-7651-01 3 149374688 149374688 C T WWTR1 Missense_Mutation p.A136T 0.08 tolerated(0.2) benign(0.004) TCGA-IB-7651-01 3 149589892 149589892 G A RNF13 Missense_Mutation p.G91D 0.16 tolerated(0.08) benign(0.061) TCGA-IB-7651-01 3 150403768 150403768 A G FAM194A Silent p.I217I 0.18 TCGA-IB-7651-01 3 150460089 150460089 G A SIAH2 Missense_Mutation p.R272W 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 150460414 150460414 G A SIAH2 Silent p.Y163Y 0.19 TCGA-IB-7651-01 3 150645882 150645882 C T CLRN1 Silent p.T193T 0.19 TCGA-IB-7651-01 3 150877688 150877688 T C MED12L Missense_Mutation p.S303P 0.19 tolerated(0.05) possibly_damaging(0.564) TCGA-IB-7651-01 3 150877748 150877748 G T MED12L Nonsense_Mutation p.G323* 0.18 TCGA-IB-7651-01 3 150903146 150903146 G A MED12L Silent p.T508T 0.19 TCGA-IB-7651-01 3 150916154 150916154 G A GPR171 3'UTR 0.19 TCGA-IB-7651-01 3 150916725 150916725 A C GPR171 Missense_Mutation p.M150R 0.22 deleterious(0) probably_damaging(0.966) TCGA-IB-7651-01 3 150917185 150917185 G A GPR171 5'UTR 0.16 TCGA-IB-7651-01 3 150931407 150931407 C T P2RY14 Missense_Mutation p.R233H 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-IB-7651-01 3 151012762 151012762 G A GPR87 Missense_Mutation p.T91M 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 151046196 151046196 A C P2RY13 Missense_Mutation p.I216M 0.18 deleterious(0.01) probably_damaging(0.951) TCGA-IB-7651-01 3 151046509 151046509 C T P2RY13 Missense_Mutation p.R112K 0.17 tolerated(0.41) benign(0.085) TCGA-IB-7651-01 3 151100468 151100468 C T MED12L Nonsense_Mutation p.R1504* 0.17 TCGA-IB-7651-01 3 151154517 151154517 A T IGSF10 Missense_Mutation p.L2611H 0.16 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 3 151155762 151155762 C T IGSF10 Missense_Mutation p.G2196E 0.17 deleterious(0) probably_damaging(0.981) TCGA-IB-7651-01 3 151163109 151163109 C T IGSF10 Missense_Mutation p.A1554T 0.17 tolerated(0.17) benign(0.073) TCGA-IB-7651-01 3 151165609 151165609 G A IGSF10 Silent p.N720N 0.15 TCGA-IB-7651-01 3 151166366 151166366 A G IGSF10 Missense_Mutation p.V468A 0.18 tolerated(0.77) benign(0.007) TCGA-IB-7651-01 3 15118571 15118571 G T ZFYVE20 Missense_Mutation p.Q367K 0.18 deleterious(0.01) possibly_damaging(0.764) TCGA-IB-7651-01 3 15127405 15127405 A G ZFYVE20 Missense_Mutation p.V118A 0.16 deleterious(0.04) possibly_damaging(0.816) TCGA-IB-7651-01 3 151451884 151451884 A G AADACL2 Missense_Mutation p.T21A 0.15 tolerated(0.24) benign(0.01) TCGA-IB-7651-01 3 151458616 151458616 G A AADACL2 Silent p.V107V 0.18 TCGA-IB-7651-01 3 151475275 151475275 G A AADACL2 Missense_Mutation p.E367K 0.16 tolerated(0.11) probably_damaging(1) TCGA-IB-7651-01 3 152150554 152150554 G A MBNL1 Missense_Mutation p.A132T 0.23 tolerated(0.23) probably_damaging(0.998) TCGA-IB-7651-01 3 152554367 152554367 C A P2RY1 Missense_Mutation p.L266M 0.18 deleterious(0.04) probably_damaging(0.999) TCGA-IB-7651-01 3 152554451 152554451 G T P2RY1 Missense_Mutation p.A294S 0.17 tolerated(0.47) benign(0) TCGA-IB-7651-01 3 152880895 152880895 G T RAP2B Missense_Mutation p.W138L 0.17 tolerated(0.13) probably_damaging(1) TCGA-IB-7651-01 3 153220229 153220229 C A C3orf79 Silent p.G87G 0.17 TCGA-IB-7651-01 3 153973185 153973185 G A ARHGEF26 Missense_Mutation p.E847K 0.11 tolerated(0.08) possibly_damaging(0.688) TCGA-IB-7651-01 3 153995419 153995419 G A DHX36 Missense_Mutation p.L886F 0.15 tolerated(0.07) possibly_damaging(0.534) TCGA-IB-7651-01 3 154002724 154002724 C T DHX36 Missense_Mutation p.R695Q 0.17 tolerated(0.22) possibly_damaging(0.687) TCGA-IB-7651-01 3 154055600 154055600 G A GPR149 Missense_Mutation p.A695V 0.17 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 3 154146651 154146651 A G GPR149 Missense_Mutation p.S252P 0.18 tolerated(0.14) benign(0.013) TCGA-IB-7651-01 3 15466479 15466479 C A METTL6 Missense_Mutation p.A115S 0.20 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 3 154832830 154832830 G T MME Missense_Mutation p.D82Y 0.07 deleterious(0) probably_damaging(0.966) TCGA-IB-7651-01 3 154834705 154834705 A G MME Missense_Mutation p.Y195C 0.15 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 3 15492864 15492864 G A COLQ 3'UTR 0.22 TCGA-IB-7651-01 3 155198762 155198762 G A PLCH1 Silent p.L1693L 0.14 TCGA-IB-7651-01 3 155222376 155222376 G A PLCH1 Nonsense_Mutation p.R546* 0.16 TCGA-IB-7651-01 3 155481469 155481469 C A C3orf33 Missense_Mutation p.S198I 0.12 deleterious(0) benign(0.332) TCGA-IB-7651-01 3 155545874 155545874 G A SLC33A1 3'UTR 0.11 TCGA-IB-7651-01 3 155545931 155545931 A G SLC33A1 3'UTR 0.18 TCGA-IB-7651-01 3 156413716 156413716 G A TIPARP Missense_Mutation p.M383I 0.20 tolerated(0.29) benign(0.002) TCGA-IB-7651-01 3 156421357 156421357 A G TIPARP Silent p.Q464Q 0.09 TCGA-IB-7651-01 3 156422599 156422599 C A TIPARP Silent p.V551V 0.16 TCGA-IB-7651-01 3 15643090 15643090 G A BTD 5'Flank 0.27 TCGA-IB-7651-01 3 15677047 15677047 A G BTD Missense_Mutation p.E54G 0.19 tolerated(0.2) benign(0.004) TCGA-IB-7651-01 3 156866190 156866190 G A CCNL1 Missense_Mutation p.S474F 0.17 deleterious(0) unknown(0) TCGA-IB-7651-01 3 15686733 15686733 T C BTD Missense_Mutation p.V457A 0.20 tolerated(0.21) benign(0.02) TCGA-IB-7651-01 3 157034982 157034982 T C VEPH1 Missense_Mutation p.R582G 0.05 tolerated(0.1) benign(0.005) TCGA-IB-7651-01 3 157081170 157081170 T C VEPH1 Missense_Mutation p.D573G 0.20 tolerated(0.07) probably_damaging(0.945) TCGA-IB-7651-01 3 157099043 157099043 G A VEPH1 Silent p.G343G 0.19 TCGA-IB-7651-01 3 157131821 157131821 T C VEPH1 Missense_Mutation p.D252G 0.18 tolerated(0.12) possibly_damaging(0.589) TCGA-IB-7651-01 3 157154617 157154617 G T PTX3 5'UTR 0.16 TCGA-IB-7651-01 3 157160843 157160843 A C PTX3 3'UTR 0.13 TCGA-IB-7651-01 3 157188105 157188105 G A VEPH1 Nonsense_Mutation p.Q118* 0.13 TCGA-IB-7651-01 3 15756164 15756164 C T ANKRD28 Splice_Site p.X303_splice 0.17 TCGA-IB-7651-01 3 157816011 157816011 G A SHOX2 Silent p.H291H 0.17 TCGA-IB-7651-01 3 157823784 157823784 C A SHOX2 Missense_Mutation p.K10N 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-IB-7651-01 3 158323034 158323034 G T MLF1 3'UTR 0.20 TCGA-IB-7651-01 3 158415343 158415343 T G RARRES1 3'UTR 0.18 TCGA-IB-7651-01 3 158415444 158415444 C T RARRES1 3'UTR 0.17 TCGA-IB-7651-01 3 158970563 158970563 T C IQCJ-SCHIP1 Missense_Mutation p.L41P 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.781) TCGA-IB-7651-01 3 159614626 159614626 C A IQCJ-SCHIP1 3'UTR 0.16 TCGA-IB-7651-01 3 160073820 160073820 C T IFT80 Missense_Mutation p.R253H 0.17 deleterious(0.02) benign(0.126) TCGA-IB-7651-01 3 160073860 160073860 C T IFT80 Missense_Mutation p.D240N 0.05 tolerated(0.44) benign(0.088) TCGA-IB-7651-01 3 160149468 160149468 C A SMC4 Missense_Mutation p.P1051H 0.16 deleterious(0.01) benign(0.005) TCGA-IB-7651-01 3 160952621 160952621 C T NMD3 Missense_Mutation p.A155V 0.16 deleterious(0) probably_damaging(0.981) TCGA-IB-7651-01 3 16216616 16216616 C T GALNT15 5'UTR 0.22 TCGA-IB-7651-01 3 16254087 16254087 T G GALNT15 Missense_Mutation p.C403W 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 16302247 16302247 G T DPH3 3'UTR 0.16 TCGA-IB-7651-01 3 16343174 16343174 G A OXNAD1 Silent p.E158E 0.16 TCGA-IB-7651-01 3 16450991 16450991 C A RFTN1 Splice_Site p.X111_splice 0.19 TCGA-IB-7651-01 3 164735356 164735356 C A SI Missense_Mutation p.V1247L 0.12 tolerated(0.19) benign(0.008) TCGA-IB-7651-01 3 164735363 164735363 G A SI Silent p.D1244D 0.11 TCGA-IB-7651-01 3 164748559 164748559 G A SI Missense_Mutation p.P945S 0.17 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 3 164906516 164906516 G T SLITRK3 Silent p.I701I 0.20 TCGA-IB-7651-01 3 164906549 164906549 G A SLITRK3 Silent p.S690S 0.17 TCGA-IB-7651-01 3 164906811 164906811 C T SLITRK3 Missense_Mutation p.R603H 0.19 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 3 165491178 165491178 C T BCHE Missense_Mutation p.G601S 0.20 tolerated(0.18) benign(0.113) TCGA-IB-7651-01 3 165504015 165504015 C T BCHE Silent p.E534E 0.17 TCGA-IB-7651-01 3 165547486 165547486 A C BCHE Missense_Mutation p.F446V 0.15 tolerated(0.29) benign(0.059) TCGA-IB-7651-01 3 167031904 167031904 A C ZBBX Missense_Mutation p.S425R 0.17 tolerated(0.09) benign(0.05) TCGA-IB-7651-01 3 167078481 167078481 G T ZBBX Missense_Mutation p.L102M 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 167159914 167159914 C A SERPINI2 Missense_Mutation p.D401Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 167246892 167246892 C T WDR49 Missense_Mutation p.R433Q 0.19 tolerated(0.93) benign(0.002) TCGA-IB-7651-01 3 167293928 167293928 G T WDR49 Silent p.L88L 0.19 TCGA-IB-7651-01 3 167508215 167508215 C T SERPINI1 Silent p.S102S 0.12 TCGA-IB-7651-01 3 167543166 167543166 C A SERPINI1 3'UTR 0.20 TCGA-IB-7651-01 3 167747014 167747014 C A GOLIM4 Nonsense_Mutation p.G504* 0.21 TCGA-IB-7651-01 3 168269667 168269667 T G MIR551B RNA 0.15 TCGA-IB-7651-01 3 168806814 168806814 G T MECOM Missense_Mutation p.P1064T 0.14 tolerated(1) benign(0.113) TCGA-IB-7651-01 3 168807822 168807822 C T MECOM Missense_Mutation p.A1000T 0.17 tolerated(0.07) benign(0.003) TCGA-IB-7651-01 3 168819903 168819903 G A MECOM Missense_Mutation p.P783S 0.14 tolerated(0.07) benign(0.031) TCGA-IB-7651-01 3 168833312 168833312 G T MECOM Missense_Mutation p.A660D 0.20 tolerated(0.08) possibly_damaging(0.886) TCGA-IB-7651-01 3 168834009 168834009 C T MECOM Missense_Mutation p.V428I 0.20 tolerated(0.21) benign(0.001) TCGA-IB-7651-01 3 169381144 169381144 C T MECOM Missense_Mutation p.R6K 0.18 deleterious(0) possibly_damaging(0.618) TCGA-IB-7651-01 3 169511691 169511691 G T LRRC34 Intron 0.26 TCGA-IB-7651-01 3 169540472 169540472 G A LRRIQ4 Missense_Mutation p.E255K 0.18 tolerated(0.57) benign(0.067) TCGA-IB-7651-01 3 169548369 169548369 C A LRRIQ4 Nonsense_Mutation p.C428* 0.16 TCGA-IB-7651-01 3 169587631 169587631 C T LRRC31 5'UTR 0.19 TCGA-IB-7651-01 3 169846869 169846869 A C PHC3 Missense_Mutation p.L464R 0.23 tolerated(0.15) probably_damaging(0.999) TCGA-IB-7651-01 3 169890386 169890386 G A PHC3 Missense_Mutation p.H99Y 0.22 deleterious(0.04) probably_damaging(0.946) TCGA-IB-7651-01 3 169988246 169988246 G A PRKCI Missense_Mutation p.G163E 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 170002313 170002313 G A PRKCI Missense_Mutation p.D378N 0.05 tolerated(0.2) possibly_damaging(0.499) TCGA-IB-7651-01 3 170009678 170009678 T C PRKCI Missense_Mutation p.C414R 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 170077995 170077995 G A SKIL 5'UTR 0.24 TCGA-IB-7651-01 3 17052328 17052328 G A PLCL2 Missense_Mutation p.R371H 0.18 tolerated(0.07) benign(0.125) TCGA-IB-7651-01 3 170611102 170611102 C T EIF5A2 3'UTR 0.16 TCGA-IB-7651-01 3 170857333 170857333 G A TNIK Nonsense_Mutation p.R449* 0.20 TCGA-IB-7651-01 3 170858289 170858289 G A TNIK Nonsense_Mutation p.R411* 0.08 TCGA-IB-7651-01 3 170928948 170928948 G T TNIK Missense_Mutation p.A88D 0.18 deleterious(0) unknown(0) TCGA-IB-7651-01 3 17208310 17208310 G T TBC1D5 Silent p.G703G 0.17 TCGA-IB-7651-01 3 172351691 172351691 G A NCEH1 Silent p.I307I 0.05 TCGA-IB-7651-01 3 172365723 172365723 C T NCEH1 Missense_Mutation p.R139H 0.19 deleterious(0) probably_damaging(0.972) TCGA-IB-7651-01 3 172365759 172365759 A C NCEH1 Missense_Mutation p.F127C 0.16 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 3 172504322 172504322 G A ECT2 Missense_Mutation p.S622N 0.15 tolerated(0.5) benign(0.001) TCGA-IB-7651-01 3 172523587 172523587 G A ECT2 Missense_Mutation p.A725T 0.18 tolerated(0.09) benign(0.201) TCGA-IB-7651-01 3 173996663 173996663 G A NLGN1 Missense_Mutation p.R291Q 0.15 deleterious(0.04) probably_damaging(0.988) TCGA-IB-7651-01 3 173996999 173996999 A G NLGN1 Missense_Mutation p.D403G 0.18 deleterious(0.02) benign(0.012) TCGA-IB-7651-01 3 173997160 173997160 C A NLGN1 Missense_Mutation p.L457M 0.18 tolerated(0.1) probably_damaging(0.997) TCGA-IB-7651-01 3 173998885 173998885 G A NLGN1 Missense_Mutation p.R755Q 0.18 deleterious_low_confidence(0.02) probably_damaging(0.975) TCGA-IB-7651-01 3 17418045 17418045 G T TBC1D5 Missense_Mutation p.L225I 0.16 tolerated(0.2) benign(0.424) TCGA-IB-7651-01 3 174814871 174814871 G A NAALADL2 Missense_Mutation p.R112Q 0.21 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 3 175165072 175165072 C A NAALADL2 Silent p.I382I 0.14 TCGA-IB-7651-01 3 178742783 178742783 C A ZMAT3 3'UTR 0.12 TCGA-IB-7651-01 3 178748762 178748762 C T ZMAT3 Missense_Mutation p.R99Q 0.15 deleterious(0.01) benign(0.342) TCGA-IB-7651-01 3 178785445 178785445 C A ZMAT3 Missense_Mutation p.Q32H 0.19 tolerated_low_confidence(0.24) benign(0.36) TCGA-IB-7651-01 3 178785487 178785487 C T ZMAT3 Silent p.S18S 0.20 TCGA-IB-7651-01 3 179051598 179051598 C T ZNF639 Silent p.T282T 0.14 TCGA-IB-7651-01 3 179069810 179069810 G A MFN1 Missense_Mutation p.A79T 0.17 deleterious(0) probably_damaging(0.923) TCGA-IB-7651-01 3 179076722 179076722 G A MFN1 Missense_Mutation p.V115I 0.19 deleterious(0.01) possibly_damaging(0.725) TCGA-IB-7651-01 3 179076766 179076766 A G MFN1 Silent p.G129G 0.18 TCGA-IB-7651-01 3 179123034 179123034 G A GNB4 Missense_Mutation p.A287V 0.17 deleterious(0.01) benign(0.437) TCGA-IB-7651-01 3 179306614 179306614 G T MRPL47 3'UTR 0.14 TCGA-IB-7651-01 3 179316509 179316509 G A MRPL47 Missense_Mutation p.A119V 0.19 deleterious(0.02) probably_damaging(0.995) TCGA-IB-7651-01 3 179320442 179320442 G T MRPL47 Missense_Mutation p.S81Y 0.20 deleterious(0) possibly_damaging(0.816) TCGA-IB-7651-01 3 179322583 179322583 T C NDUFB5 5'UTR 0.20 TCGA-IB-7651-01 3 179336307 179336307 A G NDUFB5 Silent p.L149L 0.19 TCGA-IB-7651-01 3 179481862 179481862 C A USP13 Missense_Mutation p.S722Y 0.18 deleterious(0.02) benign(0.217) TCGA-IB-7651-01 3 179499528 179499528 A G USP13 Silent p.T805T 0.19 TCGA-IB-7651-01 3 179519583 179519583 T C PEX5L 3'UTR 0.18 TCGA-IB-7651-01 3 179525504 179525504 C A PEX5L Missense_Mutation p.R545I 0.20 deleterious(0.03) probably_damaging(0.992) TCGA-IB-7651-01 3 179576866 179576866 G A PEX5L Missense_Mutation p.A269V 0.13 deleterious(0.03) probably_damaging(0.985) TCGA-IB-7651-01 3 179592146 179592146 G A PEX5L Missense_Mutation p.A232V 0.20 tolerated_low_confidence(0.35) benign(0.016) TCGA-IB-7651-01 3 180327721 180327721 G T TTC14 Missense_Mutation p.K568N 0.19 tolerated_low_confidence(0.3) unknown(0) TCGA-IB-7651-01 3 180397253 180397253 C T CCDC39 5'UTR 0.20 TCGA-IB-7651-01 3 180666195 180666195 C T FXR1 Nonsense_Mutation p.R111* 0.16 TCGA-IB-7651-01 3 180706014 180706014 T C DNAJC19 Missense_Mutation p.S3G 0.19 tolerated(0.19) benign(0) TCGA-IB-7651-01 3 181430930 181430930 C T SOX2 Missense_Mutation p.S261F 0.17 deleterious(0.01) benign(0.22) TCGA-IB-7651-01 3 182615133 182615133 G A ATP11B Missense_Mutation p.V1031I 0.17 tolerated(0.06) possibly_damaging(0.532) TCGA-IB-7651-01 3 182755097 182755097 C A MCCC1 Missense_Mutation p.K501N 0.26 tolerated(0.23) benign(0.042) TCGA-IB-7651-01 3 182810240 182810240 G A MCCC1 Missense_Mutation p.A77V 0.21 deleterious(0) possibly_damaging(0.449) TCGA-IB-7651-01 3 182841775 182841775 G T LAMP3 3'UTR 0.20 TCGA-IB-7651-01 3 183209999 183209999 G A KLHL6 Silent p.L528L 0.18 TCGA-IB-7651-01 3 183210391 183210391 C A KLHL6 Missense_Mutation p.K485N 0.15 deleterious(0.03) benign(0.09) TCGA-IB-7651-01 3 183225986 183225986 A G KLHL6 Missense_Mutation p.V257A 0.17 deleterious(0) benign(0.335) TCGA-IB-7651-01 3 183390145 183390145 A G KLHL24 Missense_Mutation p.K492R 0.18 tolerated(0.53) possibly_damaging(0.758) TCGA-IB-7651-01 3 183476677 183476677 C T YEATS2 Missense_Mutation p.A527V 0.14 tolerated_low_confidence(0.25) benign(0.004) TCGA-IB-7651-01 3 183503951 183503951 C T YEATS2 Silent p.S925S 0.17 TCGA-IB-7651-01 3 183689433 183689433 T A ABCC5 Missense_Mutation p.E560V 0.18 tolerated(0.07) benign(0.021) TCGA-IB-7651-01 3 183700361 183700361 C T ABCC5 Missense_Mutation p.V293I 0.17 tolerated(0.27) benign(0.058) TCGA-IB-7651-01 3 183755893 183755893 C A HTR3D Missense_Mutation p.L249I 0.05 deleterious(0.05) probably_damaging(0.919) TCGA-IB-7651-01 3 183756362 183756362 C T HTR3D Missense_Mutation p.A362V 0.20 tolerated(0.25) benign(0.09) TCGA-IB-7651-01 3 183777407 183777407 G A HTR3C Missense_Mutation p.A302T 0.20 tolerated(0.42) benign(0.119) TCGA-IB-7651-01 3 183777674 183777674 C T HTR3C Silent p.F328F 0.20 TCGA-IB-7651-01 3 183860674 183860674 G T EIF2B5 Missense_Mutation p.V552L 0.18 tolerated(0.44) benign(0.005) TCGA-IB-7651-01 3 183873534 183873534 G A DVL3 Silent p.L37L 0.18 TCGA-IB-7651-01 3 183899752 183899752 C T AP2M1 Nonsense_Mutation p.R294* 0.21 TCGA-IB-7651-01 3 183911153 183911153 C T ABCF3 Silent p.C628C 0.15 TCGA-IB-7651-01 3 183962463 183962463 A G ALG3 Silent p.L218L 0.20 TCGA-IB-7651-01 3 183976427 183976427 T C ECE2 Intron 0.22 TCGA-IB-7651-01 3 183994316 183994316 G T ECE2 Intron 0.23 TCGA-IB-7651-01 3 184040619 184040619 G T EIF4G1 Missense_Mutation p.K609N 0.19 deleterious(0) benign(0.121) TCGA-IB-7651-01 3 184042077 184042077 A G EIF4G1 Missense_Mutation p.D861G 0.16 deleterious(0) probably_damaging(0.975) TCGA-IB-7651-01 3 184045152 184045152 C T EIF4G1 Missense_Mutation p.R1200W 0.17 deleterious(0.01) probably_damaging(0.96) TCGA-IB-7651-01 3 184046477 184046477 C A EIF4G1 Missense_Mutation p.L1345I 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 184052556 184052556 G A EIF4G1 Missense_Mutation p.V1561M 0.10 deleterious(0.02) probably_damaging(0.95) TCGA-IB-7651-01 3 184062357 184062357 C T FAM131A Missense_Mutation p.R234C 0.21 tolerated(0.16) probably_damaging(0.988) TCGA-IB-7651-01 3 184064584 184064584 C T CLCN2 Missense_Mutation p.R836Q 0.20 tolerated(0.52) probably_damaging(0.967) TCGA-IB-7651-01 3 184072081 184072081 G A CLCN2 Missense_Mutation p.A510V 0.20 deleterious(0) possibly_damaging(0.708) TCGA-IB-7651-01 3 184079203 184079203 A G CLCN2 Splice_Site p.X21_splice 0.15 TCGA-IB-7651-01 3 184090519 184090519 C T THPO Missense_Mutation p.G282S 0.20 tolerated_low_confidence(0.1) benign(0.156) TCGA-IB-7651-01 3 184102964 184102964 C T CHRD Missense_Mutation p.L586F 0.19 deleterious(0.04) probably_damaging(0.988) TCGA-IB-7651-01 3 184104362 184104362 C T CHRD Missense_Mutation p.P672L 0.18 tolerated(0.26) benign(0.003) TCGA-IB-7651-01 3 18419793 18419793 C A SATB1 Nonsense_Mutation p.E482* 0.18 TCGA-IB-7651-01 3 184290757 184290757 G A EPHB3 Missense_Mutation p.A217T 0.17 tolerated(0.07) benign(0.014) TCGA-IB-7651-01 3 184297593 184297593 C T EPHB3 Silent p.S681S 0.19 TCGA-IB-7651-01 3 184299391 184299391 C T EPHB3 Missense_Mutation p.T993M 0.20 tolerated(0.17) possibly_damaging(0.551) TCGA-IB-7651-01 3 184542415 184542415 G A VPS8 5'UTR 0.21 TCGA-IB-7651-01 3 18456684 18456684 G A SATB1 Silent p.H186H 0.08 TCGA-IB-7651-01 3 18457596 18457596 C A SATB1 Missense_Mutation p.V140F 0.20 deleterious(0) probably_damaging(0.944) TCGA-IB-7651-01 3 18462353 18462353 T C SATB1 Missense_Mutation p.N36S 0.18 deleterious(0) possibly_damaging(0.843) TCGA-IB-7651-01 3 184800736 184800736 C T C3orf70 3'UTR 0.17 TCGA-IB-7651-01 3 184971732 184971732 G A EHHADH Intron 0.22 TCGA-IB-7651-01 3 185183578 185183578 C T MAP3K13 Missense_Mutation p.R478W 0.20 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 3 185200169 185200169 C T MAP3K13 Silent p.D942D 0.20 TCGA-IB-7651-01 3 185209335 185209335 T G TMEM41A Missense_Mutation p.K262T 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.848) TCGA-IB-7651-01 3 185226542 185226542 C T LIPH 3'UTR 0.21 TCGA-IB-7651-01 3 185232288 185232288 A C LIPH Missense_Mutation p.I335S 0.21 deleterious(0) possibly_damaging(0.71) TCGA-IB-7651-01 3 185304209 185304209 G A SENP2 Missense_Mutation p.R3K 0.20 tolerated_low_confidence(1) benign(0) TCGA-IB-7651-01 3 185363295 185363295 G A IGF2BP2 3'UTR 0.19 TCGA-IB-7651-01 3 185407235 185407235 C T IGF2BP2 Silent p.P195P 0.15 TCGA-IB-7651-01 3 185774871 185774871 G A ETV5 Missense_Mutation p.P401L 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 185986607 185986607 C T DGKG Missense_Mutation p.V367M 0.17 deleterious(0.02) possibly_damaging(0.677) TCGA-IB-7651-01 3 186262128 186262128 G T CRYGS 5'UTR 0.20 TCGA-IB-7651-01 3 186272090 186272090 C T TBCCD1 Silent p.Q499Q 0.17 TCGA-IB-7651-01 3 186299230 186299230 G A DNAJB11 Missense_Mutation p.R176Q 0.14 tolerated(0.42) benign(0.013) TCGA-IB-7651-01 3 186302256 186302256 C T DNAJB11 Missense_Mutation p.A297V 0.06 deleterious(0.03) possibly_damaging(0.667) TCGA-IB-7651-01 3 186334294 186334294 C T AHSG Silent p.Y129Y 0.28 TCGA-IB-7651-01 3 186358424 186358424 G C FETUB Missense_Mutation p.G59R 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 186370458 186370458 G A FETUB 3'UTR 0.21 TCGA-IB-7651-01 3 186395415 186395415 C T HRG Nonsense_Mutation p.R441* 0.21 TCGA-IB-7651-01 3 186502632 186502632 G A EIF4A2 Intron 0.17 TCGA-IB-7651-01 3 186504586 186504586 G A EIF4A2 Intron 0.19 TCGA-IB-7651-01 3 186505616 186505616 G A EIF4A2 Missense_Mutation p.V342M 0.20 deleterious(0) possibly_damaging(0.9) TCGA-IB-7651-01 3 186793412 186793412 C T ST6GAL1 Missense_Mutation p.R348C 0.19 probably_damaging(0.946) TCGA-IB-7651-01 3 186953477 186953477 G A MASP1 Missense_Mutation p.R728W 0.19 deleterious_low_confidence(0) possibly_damaging(0.854) TCGA-IB-7651-01 3 186968053 186968053 A C MASP1 Missense_Mutation p.I359S 0.16 deleterious(0.01) benign(0.362) TCGA-IB-7651-01 3 187009414 187009414 A G MASP1 Splice_Site p.X2_splice 0.16 TCGA-IB-7651-01 3 187386922 187386922 C T SST Silent p.P94P 0.19 TCGA-IB-7651-01 3 187386950 187386950 T G SST Missense_Mutation p.E85A 0.20 deleterious(0) possibly_damaging(0.603) TCGA-IB-7651-01 3 187387999 187387999 C T SST Silent p.S27S 0.20 TCGA-IB-7651-01 3 188327248 188327248 T G LPP Missense_Mutation p.I243M 0.20 tolerated(0.23) benign(0) TCGA-IB-7651-01 3 188584050 188584050 C T LPP Silent p.T491T 0.13 TCGA-IB-7651-01 3 188590548 188590548 C T LPP Silent p.C569C 0.23 TCGA-IB-7651-01 3 189028272 189028272 A G TPRG1 Missense_Mutation p.T193A 0.16 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 3 189349340 189349340 G A TP63 Silent p.Q12Q 0.16 TCGA-IB-7651-01 3 189349364 189349364 G T TP63 Missense_Mutation p.Q20H 0.15 tolerated_low_confidence(0.12) benign(0.043) TCGA-IB-7651-01 3 189597951 189597951 G A TP63 Intron 0.19 TCGA-IB-7651-01 3 189702355 189702355 G A LEPREL1 Nonsense_Mutation p.R405* 0.17 TCGA-IB-7651-01 3 190326890 190326890 T C IL1RAP Missense_Mutation p.Y153H 0.17 tolerated(1) benign(0.002) TCGA-IB-7651-01 3 190347219 190347219 G A IL1RAP Missense_Mutation p.R328H 0.21 deleterious(0.03) benign(0.144) TCGA-IB-7651-01 3 190993101 190993101 T C UTS2B Missense_Mutation p.K92E 0.21 tolerated(0.25) possibly_damaging(0.817) TCGA-IB-7651-01 3 191888348 191888348 C T FGF12 Missense_Mutation p.R171Q 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 192973503 192973503 G A HRASLS Missense_Mutation p.E127K 0.17 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 3 193036817 193036817 T C ATP13A5 Missense_Mutation p.K666E 0.19 tolerated(1) benign(0.142) TCGA-IB-7651-01 3 193036890 193036890 C A ATP13A5 Missense_Mutation p.K641N 0.21 tolerated(0.42) benign(0.005) TCGA-IB-7651-01 3 193096461 193096461 C A ATP13A5 Missense_Mutation p.E18D 0.19 tolerated(0.13) benign(0.052) TCGA-IB-7651-01 3 193166086 193166086 C T ATP13A4 Silent p.G687G 0.16 TCGA-IB-7651-01 3 193166103 193166103 C A ATP13A4 Missense_Mutation p.D682Y 0.07 deleterious(0) probably_damaging(0.941) TCGA-IB-7651-01 3 193171892 193171892 C T ATP13A4 Silent p.T675T 0.22 TCGA-IB-7651-01 3 19389273 19389273 G A KCNH8 Silent p.K209K 0.21 TCGA-IB-7651-01 3 194061981 194061981 C A CPN2 Missense_Mutation p.S484I 0.19 deleterious(0) possibly_damaging(0.828) TCGA-IB-7651-01 3 194117894 194117894 T C GP5 Missense_Mutation p.N373S 0.15 tolerated(0.13) probably_damaging(0.936) TCGA-IB-7651-01 3 194118727 194118727 A G GP5 Silent p.S95S 0.15 TCGA-IB-7651-01 3 194118876 194118876 G T GP5 Missense_Mutation p.L46I 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 3 194790257 194790257 G A XXYLT1 3'UTR 0.24 TCGA-IB-7651-01 3 194790697 194790697 A C XXYLT1 Missense_Mutation p.L310R 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 3 195013054 195013054 G A ACAP2 Silent p.D631D 0.16 TCGA-IB-7651-01 3 195410661 195410661 G T SDHAP2 RNA 0.20 TCGA-IB-7651-01 3 195486010 195486010 C T MUC4 Missense_Mutation p.D4991N 0.19 benign(0.141) TCGA-IB-7651-01 3 195487809 195487809 C T MUC4 Missense_Mutation p.G4932R 0.21 probably_damaging(0.98) TCGA-IB-7651-01 3 195515849 195515849 C T MUC4 Missense_Mutation p.V868I 0.15 unknown(0) TCGA-IB-7651-01 3 195516521 195516521 G A MUC4 Nonsense_Mutation p.Q644* 0.17 TCGA-IB-7651-01 3 195517585 195517585 A G MUC4 Missense_Mutation p.L289P 0.22 unknown(0) TCGA-IB-7651-01 3 195593780 195593780 G A TNK2 Silent p.S1078S 0.12 TCGA-IB-7651-01 3 195704049 195704049 G A SDHAP1 RNA 0.15 TCGA-IB-7651-01 3 195709067 195709067 G A SDHAP1 RNA 0.12 TCGA-IB-7651-01 3 195959986 195959986 A G SLC51A Silent p.T313T 0.17 TCGA-IB-7651-01 3 196050725 196050725 C A TM4SF19 Missense_Mutation p.S198I 0.05 deleterious(0) probably_damaging(0.911) TCGA-IB-7651-01 3 196214437 196214437 G A RNF168 Nonsense_Mutation p.R131* 0.19 TCGA-IB-7651-01 3 196304505 196304505 C T FBXO45 Missense_Mutation p.T167I 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 3 196386811 196386811 C T NRROS Silent p.G99G 0.16 TCGA-IB-7651-01 3 196387788 196387788 C A NRROS Missense_Mutation p.A425D 0.22 deleterious(0.03) probably_damaging(0.933) TCGA-IB-7651-01 3 196388376 196388376 G A NRROS Missense_Mutation p.C621Y 0.04 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 196509633 196509633 C A PAK2 Missense_Mutation p.P39H 0.04 deleterious(0) possibly_damaging(0.637) TCGA-IB-7651-01 3 196541366 196541366 C A PAK2 Missense_Mutation p.A327D 0.19 tolerated(0.42) possibly_damaging(0.666) TCGA-IB-7651-01 3 196613102 196613102 C A SENP5 Silent p.G350G 0.06 TCGA-IB-7651-01 3 196664036 196664036 G A NCBP2 Intron 0.10 TCGA-IB-7651-01 3 196666195 196666195 T G NCBP2 Missense_Mutation p.S63R 0.18 deleterious(0.02) probably_damaging(0.981) TCGA-IB-7651-01 3 196678897 196678897 C T PIGZ Silent p.Q2Q 0.21 TCGA-IB-7651-01 3 196746347 196746347 G A MFI2 Intron 0.19 TCGA-IB-7651-01 3 196921409 196921409 G A DLG1 Nonsense_Mutation p.Q124* 0.15 TCGA-IB-7651-01 3 197241204 197241204 C T BDH1 Missense_Mutation p.A165T 0.10 tolerated(0.08) probably_damaging(0.982) TCGA-IB-7651-01 3 197401903 197401903 G T KIAA0226 Missense_Mutation p.L969M 0.17 deleterious_low_confidence(0.03) unknown(0) TCGA-IB-7651-01 3 197408002 197408002 G A KIAA0226 Missense_Mutation p.R810W 0.20 tolerated(0.06) benign(0.344) TCGA-IB-7651-01 3 197408180 197408180 G A KIAA0226 Silent p.C750C 0.21 TCGA-IB-7651-01 3 197408739 197408739 G A KIAA0226 Missense_Mutation p.R720C 0.12 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 3 197431544 197431544 C A KIAA0226 Missense_Mutation p.S111I 0.16 tolerated(0.12) benign(0.392) TCGA-IB-7651-01 3 197431564 197431564 G A KIAA0226 Silent p.S104S 0.06 TCGA-IB-7651-01 3 197541787 197541787 C T LRCH3 Nonsense_Mutation p.R91* 0.20 TCGA-IB-7651-01 3 197566213 197566213 G A LRCH3 Missense_Mutation p.A425T 0.18 tolerated(0.39) benign(0.138) TCGA-IB-7651-01 3 197665544 197665544 C T IQCG Silent p.L130L 0.17 TCGA-IB-7651-01 3 19924048 19924048 T G EFHB Missense_Mutation p.K774N 0.17 deleterious(0) possibly_damaging(0.89) TCGA-IB-7651-01 3 19925921 19925921 G A EFHB Missense_Mutation p.A707V 0.23 deleterious(0.01) possibly_damaging(0.521) TCGA-IB-7651-01 3 20167396 20167396 G T KAT2B Splice_Site p.X472_splice 0.14 TCGA-IB-7651-01 3 20169002 20169002 G A KAT2B Silent p.E570E 0.21 TCGA-IB-7651-01 3 21462771 21462771 G A ZNF385D Missense_Mutation p.L375F 0.13 tolerated(0.17) probably_damaging(0.969) TCGA-IB-7651-01 3 21462878 21462878 G A ZNF385D Missense_Mutation p.P339L 0.10 deleterious(0) probably_damaging(0.981) TCGA-IB-7651-01 3 21478500 21478500 G T ZNF385D Missense_Mutation p.A212D 0.15 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 3 23932089 23932089 G A UBE2E1 Missense_Mutation p.A192T 0.16 deleterious(0) benign(0.34) TCGA-IB-7651-01 3 24003495 24003495 G A NR1D2 Missense_Mutation p.R182H 0.17 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 3 24206910 24206910 C T THRB Intron 0.19 TCGA-IB-7651-01 3 24231596 24231596 C A THRB Missense_Mutation p.Q84H 0.04 deleterious(0.01) benign(0.258) TCGA-IB-7651-01 3 25502706 25502706 C A RARB Missense_Mutation p.S60R 0.16 deleterious(0) probably_damaging(0.969) TCGA-IB-7651-01 3 25660243 25660243 C T TOP2B Missense_Mutation p.R1049H 0.23 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 25668286 25668286 G A TOP2B Missense_Mutation p.R691C 0.13 deleterious(0.03) benign(0.368) TCGA-IB-7651-01 3 25672321 25672321 A G TOP2B Missense_Mutation p.I454T 0.21 deleterious(0) probably_damaging(0.984) TCGA-IB-7651-01 3 25761000 25761000 T C NGLY1 Missense_Mutation p.D639G 0.20 tolerated(0.27) benign(0.007) TCGA-IB-7651-01 3 27326096 27326096 C T NEK10 Missense_Mutation p.V671I 0.13 tolerated(1) benign(0.003) TCGA-IB-7651-01 3 27326381 27326381 C A NEK10 Nonsense_Mutation p.E621* 0.21 TCGA-IB-7651-01 3 27418228 27418228 A G SLC4A7 3'UTR 0.21 TCGA-IB-7651-01 3 27418247 27418247 G A SLC4A7 3'UTR 0.13 TCGA-IB-7651-01 3 2908487 2908487 G A CNTN4 Missense_Mutation p.R169H 0.14 deleterious(0.02) possibly_damaging(0.902) TCGA-IB-7651-01 3 2928774 2928774 G T CNTN4 Missense_Mutation p.R269M 0.18 tolerated(0.07) possibly_damaging(0.606) TCGA-IB-7651-01 3 29781263 29781263 T G RBMS3 Missense_Mutation p.M151R 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-IB-7651-01 3 3067840 3067840 G A CNTN4 Missense_Mutation p.S514N 0.18 tolerated(0.06) probably_damaging(0.995) TCGA-IB-7651-01 3 30713754 30713754 A C TGFBR2 Missense_Mutation p.H385P 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-IB-7651-01 3 30729950 30729950 G A TGFBR2 Missense_Mutation p.V516M 0.17 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 3 30732970 30732970 G A TGFBR2 Missense_Mutation p.R553H 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 31918002 31918002 C T OSBPL10 Missense_Mutation p.A154T 0.15 tolerated(0.81) possibly_damaging(0.622) TCGA-IB-7651-01 3 32030747 32030747 A G ZNF860 Missense_Mutation p.N59S 0.18 deleterious(0.01) possibly_damaging(0.68) TCGA-IB-7651-01 3 32031382 32031382 C T ZNF860 Nonsense_Mutation p.R271* 0.14 TCGA-IB-7651-01 3 32031577 32031577 C T ZNF860 Missense_Mutation p.H336Y 0.15 deleterious(0.01) probably_damaging(0.995) TCGA-IB-7651-01 3 32483422 32483422 G A CMTM7 Missense_Mutation p.D84N 0.04 tolerated(0.86) benign(0.013) TCGA-IB-7651-01 3 32525446 32525446 G T CMTM6 3'UTR 0.08 TCGA-IB-7651-01 3 32571040 32571040 T C DYNC1LI1 Missense_Mutation p.N433S 0.16 tolerated(0.23) benign(0.006) TCGA-IB-7651-01 3 32572011 32572011 A G DYNC1LI1 Missense_Mutation p.F361S 0.20 tolerated(0.36) benign(0.017) TCGA-IB-7651-01 3 32574558 32574558 C A DYNC1LI1 Nonsense_Mutation p.G334* 0.15 TCGA-IB-7651-01 3 32774973 32774973 T C CNOT10 Missense_Mutation p.V485A 0.16 deleterious(0) benign(0.226) TCGA-IB-7651-01 3 32860298 32860298 G A TRIM71 Silent p.P242P 0.17 TCGA-IB-7651-01 3 32995192 32995192 C T CCR4 Missense_Mutation p.P93L 0.19 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 3 33099761 33099761 C A GLB1 Missense_Mutation p.V185F 0.20 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 3 33415414 33415414 G A FBXL2 Splice_Site p.X219_splice 0.21 TCGA-IB-7651-01 3 33420310 33420310 G T FBXL2 Intron 0.22 TCGA-IB-7651-01 3 33444367 33444367 G A UBP1 Silent p.A319A 0.08 TCGA-IB-7651-01 3 33453162 33453162 C A UBP1 Nonsense_Mutation p.G156* 0.16 TCGA-IB-7651-01 3 33623338 33623338 A G CLASP2 Silent p.S775S 0.21 TCGA-IB-7651-01 3 33729814 33729814 C T CLASP2 Missense_Mutation p.R142Q 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 3 33885712 33885712 G T PDCD6IP Missense_Mutation p.A495S 0.20 tolerated(0.42) benign(0.005) TCGA-IB-7651-01 3 36757013 36757013 C A DCLK3 Splice_Site p.X585_splice 0.22 TCGA-IB-7651-01 3 36872371 36872371 C A TRANK1 Missense_Mutation p.W2857C 0.21 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 36876271 36876271 G T TRANK1 Missense_Mutation p.A1838D 0.26 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 36897035 36897035 C A TRANK1 Missense_Mutation p.S1349I 0.17 tolerated(0.19) benign(0.144) TCGA-IB-7651-01 3 36897987 36897987 C T TRANK1 Missense_Mutation p.G1032R 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 37033662 37033662 C T EPM2AIP1 Missense_Mutation p.E303K 0.09 tolerated(0.84) benign(0.079) TCGA-IB-7651-01 3 37053334 37053334 T C MLH1 Missense_Mutation p.I190T 0.22 tolerated(0.09) benign(0.028) TCGA-IB-7651-01 3 37285015 37285015 C T GOLGA4 5'UTR 0.22 TCGA-IB-7651-01 3 38050075 38050075 G A PLCD1 Silent p.R613R 0.15 TCGA-IB-7651-01 3 38105386 38105386 T A DLEC1 Missense_Mutation p.D383E 0.18 tolerated(0.15) benign(0.059) TCGA-IB-7651-01 3 38139062 38139062 G T DLEC1 Missense_Mutation p.Q833H 0.08 tolerated(0.61) benign(0.003) TCGA-IB-7651-01 3 38141888 38141888 G A DLEC1 Missense_Mutation p.E946K 0.18 deleterious(0.02) benign(0.222) TCGA-IB-7651-01 3 38158136 38158136 A C DLEC1 Missense_Mutation p.E1350A 0.19 tolerated(0.41) benign(0.003) TCGA-IB-7651-01 3 38163660 38163660 G A DLEC1 Missense_Mutation p.A1707T 0.16 tolerated(0.86) benign(0.002) TCGA-IB-7651-01 3 38175489 38175489 G A ACAA1 Nonsense_Mutation p.Q93* 0.20 TCGA-IB-7651-01 3 38292919 38292919 A G OXSR1 Silent p.E467E 0.20 TCGA-IB-7651-01 3 38317516 38317516 G A SLC22A13 Missense_Mutation p.R389H 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 38408309 38408309 G A XYLB Missense_Mutation p.G173E 0.15 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 3 38524754 38524754 G A ACVR2B Silent p.S490S 0.20 TCGA-IB-7651-01 3 38595864 38595864 G A SCN5A Silent p.G1573G 0.19 TCGA-IB-7651-01 3 38603958 38603958 G A SCN5A Missense_Mutation p.T1304M 0.13 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 38616790 38616790 G T SCN5A Missense_Mutation p.L1222M 0.16 deleterious(0) probably_damaging(0.97) TCGA-IB-7651-01 3 38622571 38622571 G A SCN5A Missense_Mutation p.R1027W 0.22 tolerated(0.13) probably_damaging(0.999) TCGA-IB-7651-01 3 38622804 38622804 G A SCN5A Missense_Mutation p.A949V 0.23 deleterious(0.04) probably_damaging(0.998) TCGA-IB-7651-01 3 38647544 38647544 G A SCN5A Silent p.V412V 0.24 TCGA-IB-7651-01 3 38739804 38739804 G A SCN10A Missense_Mutation p.A1636V 0.20 tolerated(0.22) benign(0.261) TCGA-IB-7651-01 3 38752374 38752374 G A SCN10A Silent p.G1368G 0.12 TCGA-IB-7651-01 3 38753722 38753722 C T SCN10A Missense_Mutation p.S1340N 0.15 tolerated(0.52) benign(0.002) TCGA-IB-7651-01 3 38763851 38763851 C T SCN10A Nonsense_Mutation p.W1135* 0.17 TCGA-IB-7651-01 3 38768102 38768102 C A SCN10A Nonsense_Mutation p.G1028* 0.19 TCGA-IB-7651-01 3 38770385 38770385 A G SCN10A Missense_Mutation p.V763A 0.18 deleterious(0) possibly_damaging(0.9) TCGA-IB-7651-01 3 38781010 38781010 C T SCN10A Missense_Mutation p.R759H 0.17 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 3 38781150 38781150 C T SCN10A Missense_Mutation p.M712I 0.14 deleterious(0) possibly_damaging(0.808) TCGA-IB-7651-01 3 38793718 38793718 C T SCN10A Missense_Mutation p.D583N 0.15 tolerated(0.2) benign(0.04) TCGA-IB-7651-01 3 3888139 3888139 C T LRRN1 Missense_Mutation p.T605I 0.19 tolerated(0.27) benign(0.018) TCGA-IB-7651-01 3 38888777 38888777 A G SCN11A Missense_Mutation p.V1595A 0.21 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 38962576 38962576 C T SCN11A Missense_Mutation p.E295K 0.18 tolerated(0.49) benign(0.006) TCGA-IB-7651-01 3 39111170 39111170 C A WDR48 Missense_Mutation p.L203I 0.18 tolerated(0.43) benign(0.05) TCGA-IB-7651-01 3 39116241 39116241 A G WDR48 Missense_Mutation p.T233A 0.17 deleterious(0.02) possibly_damaging(0.708) TCGA-IB-7651-01 3 39126162 39126162 T G WDR48 Missense_Mutation p.S436R 0.21 tolerated(0.13) benign(0.392) TCGA-IB-7651-01 3 39170682 39170682 G A TTC21A Silent p.A679A 0.16 TCGA-IB-7651-01 3 39178504 39178504 C T TTC21A Silent p.N1077N 0.10 TCGA-IB-7651-01 3 39186588 39186588 C T CSRNP1 Missense_Mutation p.R122H 0.18 tolerated(0.28) benign(0.014) TCGA-IB-7651-01 3 39228903 39228903 C T XIRP1 Silent p.R678R 0.19 TCGA-IB-7651-01 3 39229562 39229562 G A XIRP1 Silent p.L459L 0.18 TCGA-IB-7651-01 3 39229727 39229727 G A XIRP1 Nonsense_Mutation p.R404* 0.04 TCGA-IB-7651-01 3 39230603 39230603 G A XIRP1 Missense_Mutation p.P112S 0.20 tolerated(0.6) benign(0.022) TCGA-IB-7651-01 3 39450202 39450202 G T RPSA Missense_Mutation p.R80M 0.06 deleterious(0) probably_damaging(0.979) TCGA-IB-7651-01 3 40223778 40223778 C T MYRIP Missense_Mutation p.S314L 0.18 tolerated(0.31) benign(0.004) TCGA-IB-7651-01 3 40231314 40231314 C T MYRIP Intron 0.17 TCGA-IB-7651-01 3 40275428 40275428 G T MYRIP Nonsense_Mutation p.G662* 0.10 TCGA-IB-7651-01 3 40299837 40299837 G A MYRIP 3'UTR 0.14 TCGA-IB-7651-01 3 40524102 40524102 G T ZNF619 Missense_Mutation p.D108Y 0.18 deleterious(0.04) probably_damaging(0.94) TCGA-IB-7651-01 3 40528333 40528333 C T ZNF619 Missense_Mutation p.A151V 0.15 tolerated(0.24) benign(0.084) TCGA-IB-7651-01 3 40528415 40528415 C T ZNF619 Silent p.D178D 0.17 TCGA-IB-7651-01 3 40529531 40529531 C T ZNF619 Silent p.C550C 0.16 TCGA-IB-7651-01 3 40558249 40558249 C T ZNF620 Silent p.G388G 0.08 TCGA-IB-7651-01 3 40571782 40571782 C T ZNF621 Silent p.T78T 0.19 TCGA-IB-7651-01 3 407729 407729 A G CHL1 Missense_Mutation p.K561R 0.20 tolerated(0.32) benign(0.015) TCGA-IB-7651-01 3 41266622 41266622 T A CTNNB1 Missense_Mutation p.I140N 0.24 deleterious(0) probably_damaging(0.968) TCGA-IB-7651-01 3 41275022 41275022 A C CTNNB1 Missense_Mutation p.E396D 0.21 tolerated(0.58) benign(0) TCGA-IB-7651-01 3 41275077 41275077 A C CTNNB1 Missense_Mutation p.N415H 0.16 deleterious(0.03) benign(0.012) TCGA-IB-7651-01 3 41275096 41275096 C T CTNNB1 Missense_Mutation p.A421V 0.16 tolerated(0.14) benign(0.077) TCGA-IB-7651-01 3 41275730 41275730 G A CTNNB1 Missense_Mutation p.R542H 0.17 deleterious(0) benign(0.046) TCGA-IB-7651-01 3 41746752 41746752 C T ULK4 Missense_Mutation p.A894T 0.09 deleterious(0) possibly_damaging(0.901) TCGA-IB-7651-01 3 41756938 41756938 C A ULK4 Splice_Site p.X859_splice 0.18 TCGA-IB-7651-01 3 41939937 41939937 T C ULK4 Silent p.L445L 0.21 TCGA-IB-7651-01 3 42234671 42234671 G A TRAK1 Missense_Mutation p.V292I 0.21 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 3 42236404 42236404 C T TRAK1 Missense_Mutation p.R362C 0.22 deleterious(0.05) possibly_damaging(0.88) TCGA-IB-7651-01 3 42244300 42244300 C T TRAK1 Intron 0.22 TCGA-IB-7651-01 3 42251796 42251796 C T TRAK1 Intron 0.22 TCGA-IB-7651-01 3 42568884 42568884 G T VIPR1 Splice_Site p.X134_splice 0.16 TCGA-IB-7651-01 3 42672059 42672059 C T NKTR Silent p.H132H 0.16 TCGA-IB-7651-01 3 42681067 42681067 C T NKTR Missense_Mutation p.P1291S 0.18 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-IB-7651-01 3 42685488 42685488 C T NKTR Missense_Mutation p.R1432W 0.13 tolerated_low_confidence(0.08) unknown(0) TCGA-IB-7651-01 3 42705408 42705408 C T ZBTB47 Silent p.F619F 0.23 TCGA-IB-7651-01 3 42727236 42727236 C T KLHL40 Silent p.R42R 0.20 TCGA-IB-7651-01 3 42729786 42729786 C T KLHL40 Silent p.Y435Y 0.20 TCGA-IB-7651-01 3 42775003 42775003 C T CCDC13 Silent p.P490P 0.17 TCGA-IB-7651-01 3 42777266 42777266 G A CCDC13 Missense_Mutation p.A435V 0.15 tolerated(0.24) possibly_damaging(0.897) TCGA-IB-7651-01 3 42781273 42781273 C T CCDC13 Silent p.Q339Q 0.18 TCGA-IB-7651-01 3 42906716 42906716 G T ACKR2 Missense_Mutation p.R241M 0.16 deleterious(0.03) possibly_damaging(0.478) TCGA-IB-7651-01 3 42915764 42915764 G T CYP8B1 3'UTR 0.15 TCGA-IB-7651-01 3 42916392 42916392 C T CYP8B1 Missense_Mutation p.R306Q 0.22 tolerated(0.32) benign(0.003) TCGA-IB-7651-01 3 42956202 42956202 A C ZNF662 Missense_Mutation p.T239P 0.19 deleterious(0.03) benign(0.146) TCGA-IB-7651-01 3 42956386 42956386 A C ZNF662 Missense_Mutation p.K300T 0.16 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 3 42956441 42956441 G A ZNF662 Silent p.T318T 0.17 TCGA-IB-7651-01 3 42956571 42956571 G A ZNF662 Missense_Mutation p.D362N 0.23 tolerated(0.09) benign(0.015) TCGA-IB-7651-01 3 43121639 43121639 G A POMGNT2 Missense_Mutation p.R429C 0.20 deleterious(0.04) benign(0.306) TCGA-IB-7651-01 3 433368 433368 G A CHL1 Silent p.Q934Q 0.15 TCGA-IB-7651-01 3 43344702 43344702 G T SNRK Nonsense_Mutation p.G3* 0.17 TCGA-IB-7651-01 3 43389079 43389079 T G SNRK Missense_Mutation p.F443C 0.23 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 3 43640110 43640110 T C ANO10 Missense_Mutation p.K129R 0.17 tolerated(0.09) possibly_damaging(0.566) TCGA-IB-7651-01 3 44409153 44409153 C T TCAIM Silent p.D175D 0.17 TCGA-IB-7651-01 3 44488939 44488939 A G ZNF445 Missense_Mutation p.S742P 0.11 tolerated(0.23) unknown(0) TCGA-IB-7651-01 3 44492866 44492866 C T ZNF445 Missense_Mutation p.G180R 0.19 tolerated(0.33) probably_damaging(0.953) TCGA-IB-7651-01 3 44497024 44497024 C T ZNF445 Nonsense_Mutation p.W6* 0.16 TCGA-IB-7651-01 3 44541647 44541647 T C ZNF852 Missense_Mutation p.T208A 0.20 tolerated(0.05) benign(0.006) TCGA-IB-7651-01 3 44611810 44611810 G T ZKSCAN7 Missense_Mutation p.R403I 0.09 deleterious(0.05) probably_damaging(0.921) TCGA-IB-7651-01 3 44612305 44612305 G A ZKSCAN7 Missense_Mutation p.R568Q 0.06 tolerated(0.13) benign(0.397) TCGA-IB-7651-01 3 44635870 44635870 G T ZNF660 Missense_Mutation p.S62I 0.25 deleterious(0.03) benign(0.442) TCGA-IB-7651-01 3 44700999 44700999 C T ZNF35 Nonsense_Mutation p.R382* 0.16 TCGA-IB-7651-01 3 44763223 44763223 G A ZNF502 Missense_Mutation p.R305Q 0.19 tolerated(0.19) benign(0.325) TCGA-IB-7651-01 3 44776675 44776675 C A ZNF501 Silent p.S254S 0.18 TCGA-IB-7651-01 3 44803019 44803019 C T KIAA1143 Missense_Mutation p.G26S 0.19 deleterious(0.04) probably_damaging(1) TCGA-IB-7651-01 3 44803354 44803354 C A KIF15 5'UTR 0.16 TCGA-IB-7651-01 3 44867540 44867540 C T KIF15 Silent p.N853N 0.11 TCGA-IB-7651-01 3 44872399 44872399 C A KIF15 Missense_Mutation p.N1020K 0.20 tolerated(0.08) benign(0.11) TCGA-IB-7651-01 3 44929289 44929289 T C TGM4 Splice_Site p.X100_splice 0.20 TCGA-IB-7651-01 3 44943361 44943361 G A TGM4 Silent p.T303T 0.18 TCGA-IB-7651-01 3 45160072 45160072 C T CDCP1 Missense_Mutation p.V42I 0.15 tolerated(0.33) benign(0.034) TCGA-IB-7651-01 3 45459025 45459025 G A LARS2 Missense_Mutation p.A139T 0.26 deleterious(0) probably_damaging(0.916) TCGA-IB-7651-01 3 45636972 45636972 G A LIMD1 Missense_Mutation p.G201S 0.17 tolerated(0.72) benign(0.004) TCGA-IB-7651-01 3 45637385 45637385 G T LIMD1 Missense_Mutation p.Q338H 0.16 tolerated(0.13) benign(0.002) TCGA-IB-7651-01 3 45800611 45800611 G A SLC6A20 Silent p.L546L 0.20 TCGA-IB-7651-01 3 45807055 45807055 C A SLC6A20 Missense_Mutation p.S426I 0.20 deleterious(0.02) benign(0.278) TCGA-IB-7651-01 3 45812884 45812884 G T SLC6A20 Missense_Mutation p.L254M 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 45942482 45942482 C A CCR9 Missense_Mutation p.L68I 0.21 deleterious(0.01) probably_damaging(0.985) TCGA-IB-7651-01 3 46008354 46008354 T G FYCO1 Missense_Mutation p.K824N 0.09 deleterious(0) benign(0.287) TCGA-IB-7651-01 3 46008506 46008506 A G FYCO1 Missense_Mutation p.S774P 0.19 tolerated(0.09) benign(0.333) TCGA-IB-7651-01 3 46062946 46062946 G A XCR1 Missense_Mutation p.T165I 0.16 tolerated(0.26) benign(0.005) TCGA-IB-7651-01 3 46063378 46063378 G A XCR1 Missense_Mutation p.P21L 0.17 tolerated(1) benign(0) TCGA-IB-7651-01 3 46244850 46244850 G A CCR1 Missense_Mutation p.R319C 0.20 tolerated(0.1) benign(0.35) TCGA-IB-7651-01 3 46245532 46245532 G A CCR1 Silent p.I91I 0.21 TCGA-IB-7651-01 3 46399102 46399102 C T CCR2 Silent p.Y28Y 0.17 TCGA-IB-7651-01 3 46449860 46449860 C A CCRL2 Missense_Mutation p.A109D 0.16 deleterious(0.01) possibly_damaging(0.603) TCGA-IB-7651-01 3 46450274 46450274 G A CCRL2 Missense_Mutation p.S247N 0.18 tolerated(0.17) benign(0.076) TCGA-IB-7651-01 3 46488808 46488808 C T LTF Missense_Mutation p.E432K 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 46580536 46580536 G A LRRC2 Silent p.I163I 0.17 TCGA-IB-7651-01 3 46717749 46717749 G T ALS2CL Silent p.L724L 0.17 TCGA-IB-7651-01 3 46783961 46783961 C T PRSS45 Missense_Mutation p.R189H 0.20 deleterious(0.02) benign(0.33) TCGA-IB-7651-01 3 46784535 46784535 C A PRSS45 Missense_Mutation p.Q107H 0.17 deleterious(0.02) probably_damaging(0.973) TCGA-IB-7651-01 3 46785608 46785608 G T PRSS45 Missense_Mutation p.L46I 0.13 deleterious(0.02) possibly_damaging(0.629) TCGA-IB-7651-01 3 4683897 4683897 A C ITPR1 Missense_Mutation p.I163L 0.08 deleterious(0.02) probably_damaging(0.985) TCGA-IB-7651-01 3 4683914 4683914 G T ITPR1 Missense_Mutation p.K168N 0.09 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 46963467 46963467 G A CCDC12 3'UTR 0.18 TCGA-IB-7651-01 3 46966960 46966960 G A CCDC12 Missense_Mutation p.A90V 0.15 tolerated(0.07) benign(0.395) TCGA-IB-7651-01 3 47030423 47030423 G A NBEAL2 Missense_Mutation p.A78T 0.15 tolerated(0.1) benign(0.008) TCGA-IB-7651-01 3 47036593 47036593 G A NBEAL2 Silent p.A456A 0.22 TCGA-IB-7651-01 3 47040450 47040450 C T NBEAL2 Missense_Mutation p.A1129V 0.23 tolerated(1) benign(0) TCGA-IB-7651-01 3 47041693 47041693 C T NBEAL2 Silent p.G1368G 0.17 TCGA-IB-7651-01 3 47042768 47042768 G T NBEAL2 Splice_Site p.X1495_splice 0.18 TCGA-IB-7651-01 3 47047546 47047546 C A NBEAL2 Silent p.T2304T 0.19 TCGA-IB-7651-01 3 47049628 47049628 C T NBEAL2 Silent p.S2557S 0.14 TCGA-IB-7651-01 3 47164368 47164368 A C SETD2 Missense_Mutation p.H586Q 0.19 deleterious_low_confidence(0) benign(0.276) TCGA-IB-7651-01 3 47269957 47269957 C A KIF9 3'UTR 0.18 TCGA-IB-7651-01 3 47270018 47270018 T C KIF9 3'UTR 0.20 TCGA-IB-7651-01 3 47281293 47281293 A G KIF9 Intron 0.21 TCGA-IB-7651-01 3 47299019 47299019 T G KIF9 Missense_Mutation p.K338T 0.16 deleterious(0.02) possibly_damaging(0.875) TCGA-IB-7651-01 3 47371497 47371497 C T KLHL18 Missense_Mutation p.A153V 0.06 tolerated(0.31) benign(0.175) TCGA-IB-7651-01 3 47449834 47449834 G T PTPN23 Splice_Site p.X395_splice 0.15 TCGA-IB-7651-01 3 47451949 47451949 C A PTPN23 Silent p.I887I 0.13 TCGA-IB-7651-01 3 47454450 47454450 G A PTPN23 Silent p.P1562P 0.14 TCGA-IB-7651-01 3 47454517 47454517 C A PTPN23 Missense_Mutation p.P1585T 0.19 unknown(0) TCGA-IB-7651-01 3 47456585 47456585 G A SCAP Intron 0.17 TCGA-IB-7651-01 3 47459949 47459949 G A SCAP Silent p.R731R 0.19 TCGA-IB-7651-01 3 47460252 47460252 G A SCAP Silent p.D674D 0.11 TCGA-IB-7651-01 3 47467101 47467101 C T SCAP Missense_Mutation p.R304Q 0.19 deleterious(0.01) possibly_damaging(0.534) TCGA-IB-7651-01 3 4747971 4747971 C T ITPR1 Missense_Mutation p.A1578V 0.14 tolerated(0.13) benign(0.092) TCGA-IB-7651-01 3 47545887 47545887 C A ELP6 Nonsense_Mutation p.G86* 0.18 TCGA-IB-7651-01 3 47618869 47618869 A G CSPG5 Missense_Mutation p.L216P 0.17 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-IB-7651-01 3 47619042 47619042 G A CSPG5 Silent p.G158G 0.21 TCGA-IB-7651-01 3 47651741 47651741 C T SMARCC1 Missense_Mutation p.R953Q 0.04 deleterious(0.05) probably_damaging(0.938) TCGA-IB-7651-01 3 47742803 47742803 A G SMARCC1 Missense_Mutation p.V377A 0.17 tolerated(0.49) benign(0.027) TCGA-IB-7651-01 3 47868868 47868868 G T DHX30 Missense_Mutation p.Q52H 0.08 tolerated(0.15) benign(0.119) TCGA-IB-7651-01 3 47882405 47882405 C T DHX30 Silent p.D135D 0.18 TCGA-IB-7651-01 3 47884644 47884644 C T DHX30 Missense_Mutation p.L280F 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 3 47887317 47887317 G A DHX30 Missense_Mutation p.R356H 0.19 tolerated(0.1) benign(0.006) TCGA-IB-7651-01 3 47891449 47891449 C T DHX30 Missense_Mutation p.R1142W 0.13 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 47891485 47891485 C T DHX30 Missense_Mutation p.R1154C 0.16 tolerated(0.08) benign(0.002) TCGA-IB-7651-01 3 47912583 47912583 C T MAP4 Missense_Mutation p.R860H 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 3 48266102 48266102 C T CAMP Missense_Mutation p.R110W 0.14 deleterious(0.03) benign(0.048) TCGA-IB-7651-01 3 48266844 48266844 A G CAMP Missense_Mutation p.K151R 0.17 tolerated(0.31) benign(0.002) TCGA-IB-7651-01 3 4836804 4836804 G A ITPR1 Silent p.S2273S 0.20 TCGA-IB-7651-01 3 48451722 48451722 T C PLXNB1 Missense_Mutation p.D1863G 0.18 deleterious(0.02) benign(0.43) TCGA-IB-7651-01 3 48454198 48454198 G T PLXNB1 Missense_Mutation p.L1603M 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 48463136 48463136 G T PLXNB1 Missense_Mutation p.L534M 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-IB-7651-01 3 4847865 4847865 C A ITPR1 Missense_Mutation p.L2381M 0.22 tolerated(1) benign(0.013) TCGA-IB-7651-01 3 48495698 48495698 A C ATRIP Splice_Site p.X185_splice 0.14 TCGA-IB-7651-01 3 48506304 48506304 C T ATRIP Silent p.T710T 0.18 TCGA-IB-7651-01 3 48508597 48508597 C T TREX1 Silent p.S236S 0.18 TCGA-IB-7651-01 3 4852977 4852977 C T ITPR1 Missense_Mutation p.T2419I 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 48587583 48587583 C T PFKFB4 Missense_Mutation p.R61Q 0.18 probably_damaging(0.973) TCGA-IB-7651-01 3 48600466 48600466 C T UCN2 Missense_Mutation p.R31H 0.18 tolerated(0.3) benign(0) TCGA-IB-7651-01 3 48611968 48611968 T C COL7A1 Missense_Mutation p.K2137E 0.20 unknown(0) TCGA-IB-7651-01 3 48612815 48612815 C T COL7A1 Missense_Mutation p.G2046D 0.18 unknown(0) TCGA-IB-7651-01 3 48619008 48619008 G A COL7A1 Missense_Mutation p.R1594W 0.21 unknown(0) TCGA-IB-7651-01 3 48621004 48621004 C T COL7A1 Silent p.G1462G 0.15 TCGA-IB-7651-01 3 48621343 48621343 G A COL7A1 Missense_Mutation p.P1423L 0.21 unknown(0) TCGA-IB-7651-01 3 48621980 48621980 C A COL7A1 Nonsense_Mutation p.G1353* 0.04 TCGA-IB-7651-01 3 48631916 48631916 G A COL7A1 Missense_Mutation p.R51C 0.21 unknown(0) TCGA-IB-7651-01 3 48670685 48670685 C A SLC26A6 Missense_Mutation p.Q107H 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 48670820 48670820 G T SLC26A6 Nonsense_Mutation p.C62* 0.21 TCGA-IB-7651-01 3 48677614 48677614 G T CELSR3 Missense_Mutation p.A3135D 0.21 tolerated_low_confidence(0.32) benign(0.101) TCGA-IB-7651-01 3 48679431 48679431 C T CELSR3 Missense_Mutation p.D2893N 0.11 deleterious(0) benign(0.377) TCGA-IB-7651-01 3 48682471 48682471 G T CELSR3 Missense_Mutation p.L2657M 0.15 deleterious(0.03) probably_damaging(0.968) TCGA-IB-7651-01 3 48698039 48698039 C T CELSR3 Missense_Mutation p.D677N 0.20 deleterious(0) probably_damaging(0.977) TCGA-IB-7651-01 3 48698703 48698703 C T CELSR3 Silent p.L455L 0.26 TCGA-IB-7651-01 3 48717248 48717248 C T NCKIPSD Missense_Mutation p.A446T 0.22 tolerated(0.27) benign(0.007) TCGA-IB-7651-01 3 48717612 48717612 C T NCKIPSD Silent p.R381R 0.23 TCGA-IB-7651-01 3 49042371 49042371 G A P4HTM Missense_Mutation p.G322E 0.18 deleterious(0) possibly_damaging(0.872) TCGA-IB-7651-01 3 49049361 49049361 G T WDR6 Missense_Mutation p.A162S 0.18 tolerated(0.1) possibly_damaging(0.861) TCGA-IB-7651-01 3 49060138 49060138 G A NDUFAF3 Missense_Mutation p.G92R 0.08 tolerated(0.07) probably_damaging(0.991) TCGA-IB-7651-01 3 49060385 49060385 C T NDUFAF3 Silent p.G138G 0.08 TCGA-IB-7651-01 3 49065268 49065268 G A IMPDH2 Missense_Mutation p.R136W 0.20 deleterious(0.03) possibly_damaging(0.901) TCGA-IB-7651-01 3 49084009 49084009 C T QRICH1 Missense_Mutation p.R507H 0.17 deleterious(0.01) probably_damaging(0.961) TCGA-IB-7651-01 3 49094859 49094859 G A QRICH1 Silent p.Y258Y 0.16 TCGA-IB-7651-01 3 49147789 49147789 C T USP19 Missense_Mutation p.R1287H 0.17 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 3 49153749 49153749 C T USP19 Missense_Mutation p.G440E 0.17 deleterious(0) possibly_damaging(0.896) TCGA-IB-7651-01 3 49159704 49159704 G A LAMB2 Missense_Mutation p.A1558V 0.21 deleterious(0) benign(0.054) TCGA-IB-7651-01 3 49162549 49162549 C T LAMB2 Missense_Mutation p.R925Q 0.19 tolerated(0.05) probably_damaging(0.966) TCGA-IB-7651-01 3 49167044 49167044 C T LAMB2 Missense_Mutation p.R504H 0.18 tolerated(0.05) benign(0.005) TCGA-IB-7651-01 3 49168980 49168980 G T LAMB2 Silent p.S212S 0.16 TCGA-IB-7651-01 3 49201684 49201684 C T CCDC71 5'UTR 0.22 TCGA-IB-7651-01 3 49293689 49293689 C T CCDC36 Silent p.V253V 0.23 TCGA-IB-7651-01 3 49332010 49332010 G A USP4 Silent p.S571S 0.19 TCGA-IB-7651-01 3 49338072 49338072 A G USP4 Missense_Mutation p.I447T 0.20 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 3 49348051 49348051 A G USP4 Splice_Site p.X318_splice 0.17 TCGA-IB-7651-01 3 49463818 49463818 C A NICN1 Missense_Mutation p.S59I 0.06 deleterious(0) benign(0.324) TCGA-IB-7651-01 3 49569067 49569067 G A DAG1 Missense_Mutation p.A375T 0.21 tolerated(0.61) benign(0.018) TCGA-IB-7651-01 3 49680444 49680444 G A BSN Silent p.P459P 0.13 TCGA-IB-7651-01 3 49690192 49690192 G A BSN Missense_Mutation p.R1068H 0.18 unknown(0) TCGA-IB-7651-01 3 49692063 49692063 G A BSN Missense_Mutation p.E1692K 0.21 unknown(0) TCGA-IB-7651-01 3 49714060 49714060 G A APEH Missense_Mutation p.D255N 0.21 tolerated(0.08) probably_damaging(0.957) TCGA-IB-7651-01 3 49719835 49719835 G A APEH Missense_Mutation p.G553D 0.15 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 3 49725205 49725205 A C MST1 Missense_Mutation p.C74G 0.15 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 3 49735349 49735349 G A RNF123 Missense_Mutation p.R125H 0.19 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 3 49740132 49740132 C T RNF123 Missense_Mutation p.R566C 0.10 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 3 49742976 49742976 G T RNF123 Missense_Mutation p.S723I 0.17 tolerated(0.11) benign(0.1) TCGA-IB-7651-01 3 49749963 49749963 G A RNF123 Missense_Mutation p.E850K 0.20 tolerated(0.38) possibly_damaging(0.791) TCGA-IB-7651-01 3 49753080 49753080 G T RNF123 Missense_Mutation p.S1028I 0.18 deleterious(0.03) benign(0.333) TCGA-IB-7651-01 3 49753586 49753586 C T RNF123 Missense_Mutation p.R1131C 0.18 deleterious(0.01) benign(0.326) TCGA-IB-7651-01 3 49753836 49753836 C T RNF123 Silent p.S1142S 0.17 TCGA-IB-7651-01 3 49757969 49757969 C A RNF123 Missense_Mutation p.L1176M 0.19 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 3 49759112 49759112 C A GMPPB 3'UTR 0.17 TCGA-IB-7651-01 3 49764895 49764895 C T IP6K1 Missense_Mutation p.R329H 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 49842116 49842116 T C FAM212A Missense_Mutation p.V187A 0.05 deleterious(0.02) probably_damaging(0.99) TCGA-IB-7651-01 3 49845353 49845353 C T UBA7 Missense_Mutation p.R844Q 0.21 tolerated(0.53) benign(0.047) TCGA-IB-7651-01 3 49847012 49847012 C A UBA7 Missense_Mutation p.G684V 0.18 tolerated(0.28) benign(0.142) TCGA-IB-7651-01 3 49847305 49847305 C T UBA7 Missense_Mutation p.R616Q 0.11 tolerated(0.05) benign(0.382) TCGA-IB-7651-01 3 49850508 49850508 G A UBA7 Missense_Mutation p.R152W 0.15 deleterious(0.04) benign(0.019) TCGA-IB-7651-01 3 49885589 49885589 T C TRAIP Missense_Mutation p.Q48R 0.23 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 49929221 49929221 G A MST1R Nonsense_Mutation p.R1108* 0.19 TCGA-IB-7651-01 3 49934771 49934771 G A MST1R Silent p.L709L 0.16 TCGA-IB-7651-01 3 49940299 49940299 T C MST1R Silent p.E248E 0.17 TCGA-IB-7651-01 3 49940700 49940700 G A MST1R Missense_Mutation p.P115S 0.05 tolerated(0.19) benign(0.035) TCGA-IB-7651-01 3 49949310 49949310 G A MON1A Missense_Mutation p.R185C 0.14 deleterious(0.01) possibly_damaging(0.804) TCGA-IB-7651-01 3 50222947 50222947 G A SEMA3F Missense_Mutation p.E510K 0.18 deleterious(0.01) benign(0.168) TCGA-IB-7651-01 3 50230697 50230697 G T GNAT1 Splice_Site p.X50_splice 0.16 TCGA-IB-7651-01 3 5025367 5025367 C T BHLHE40 Missense_Mutation p.T410I 0.18 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-IB-7651-01 3 50255260 50255260 G A SLC38A3 RNA 0.20 TCGA-IB-7651-01 3 50290492 50290492 G A GNAI2 Missense_Mutation p.A114T 0.15 tolerated(0.47) benign(0.229) TCGA-IB-7651-01 3 50313010 50313010 G A LSMEM2 5'Flank 0.15 TCGA-IB-7651-01 3 50339672 50339672 C A HYAL1 Missense_Mutation p.S239I 0.08 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 50357048 50357048 G A HYAL2 Silent p.Y291Y 0.20 TCGA-IB-7651-01 3 50379568 50379568 G A ZMYND10 Missense_Mutation p.R293W 0.15 deleterious(0) probably_damaging(0.965) TCGA-IB-7651-01 3 50385985 50385985 G A NPRL2 Silent p.G231G 0.20 TCGA-IB-7651-01 3 50385991 50385991 G T NPRL2 Nonsense_Mutation p.Y229* 0.18 TCGA-IB-7651-01 3 50413104 50413104 G A CACNA2D2 Silent p.T626T 0.17 TCGA-IB-7651-01 3 50608542 50608542 C A HEMK1 Missense_Mutation p.L3I 0.07 tolerated_low_confidence(0.05) benign(0.075) TCGA-IB-7651-01 3 50685354 50685354 G A MAPKAPK3 Missense_Mutation p.M342I 0.16 deleterious(0.02) benign(0.143) TCGA-IB-7651-01 3 51251556 51251556 T G DOCK3 Missense_Mutation p.L377R 0.06 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 3 51263178 51263178 C A DOCK3 Missense_Mutation p.L451I 0.18 deleterious(0.04) benign(0.143) TCGA-IB-7651-01 3 51264771 51264771 C A DOCK3 Missense_Mutation p.L479I 0.19 tolerated(0.11) probably_damaging(0.999) TCGA-IB-7651-01 3 51399995 51399995 C T DOCK3 Missense_Mutation p.T1728I 0.18 deleterious_low_confidence(0.05) benign(0.001) TCGA-IB-7651-01 3 51457286 51457286 C T VPRBP Silent p.A617A 0.21 TCGA-IB-7651-01 3 51457767 51457767 G A VPRBP Missense_Mutation p.A457V 0.16 tolerated(0.34) benign(0.153) TCGA-IB-7651-01 3 51458120 51458120 A G VPRBP Silent p.S339S 0.18 TCGA-IB-7651-01 3 51517735 51517735 C A VPRBP Missense_Mutation p.R37M 0.17 deleterious(0) possibly_damaging(0.843) TCGA-IB-7651-01 3 51743024 51743024 G A GRM2 Missense_Mutation p.A9T 0.21 tolerated(0.39) possibly_damaging(0.483) TCGA-IB-7651-01 3 51743339 51743339 G A GRM2 Missense_Mutation p.A114T 0.19 tolerated(0.8) benign(0.034) TCGA-IB-7651-01 3 51749343 51749343 C T GRM2 Silent p.C518C 0.07 TCGA-IB-7651-01 3 51897380 51897380 C T IQCF2 Silent p.N163N 0.17 TCGA-IB-7651-01 3 51929102 51929102 C T IQCF1 Missense_Mutation p.R141H 0.17 tolerated(0.09) benign(0.299) TCGA-IB-7651-01 3 51990245 51990245 G A GPR62 Missense_Mutation p.G193S 0.20 tolerated(0.7) benign(0.061) TCGA-IB-7651-01 3 51990621 51990621 C T GPR62 Missense_Mutation p.P318L 0.26 tolerated(0.46) benign(0) TCGA-IB-7651-01 3 52014483 52014483 C T ABHD14A Missense_Mutation p.R158W 0.22 deleterious(0.05) benign(0.016) TCGA-IB-7651-01 3 52084755 52084755 C T DUSP7 3'UTR 0.31 TCGA-IB-7651-01 3 52087977 52087977 G T DUSP7 Missense_Mutation p.P311T 0.18 deleterious(0) probably_damaging(0.921) TCGA-IB-7651-01 3 52088391 52088391 C A DUSP7 Splice_Site p.X173_splice 0.17 TCGA-IB-7651-01 3 52156463 52156463 C T POC1A Missense_Mutation p.V305I 0.07 tolerated(0.4) benign(0.001) TCGA-IB-7651-01 3 52181054 52181054 C T POC1A Silent p.L171L 0.15 TCGA-IB-7651-01 3 52185074 52185074 C A POC1A Missense_Mutation p.A21S 0.17 tolerated(0.13) benign(0.14) TCGA-IB-7651-01 3 52239987 52239987 G A ALAS1 Silent p.S311S 0.25 TCGA-IB-7651-01 3 52256063 52256063 C T TLR9 Missense_Mutation p.V911I 0.16 tolerated(0.19) probably_damaging(0.998) TCGA-IB-7651-01 3 52256221 52256221 C T TLR9 Missense_Mutation p.R858Q 0.08 tolerated(1) benign(0.006) TCGA-IB-7651-01 3 52257562 52257562 C T TLR9 Missense_Mutation p.R411H 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 52258212 52258212 G A TLR9 Silent p.H194H 0.11 TCGA-IB-7651-01 3 52265189 52265189 G A TWF2 Missense_Mutation p.P146L 0.14 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 52266028 52266028 G A TWF2 Missense_Mutation p.R72C 0.20 deleterious(0.01) possibly_damaging(0.705) TCGA-IB-7651-01 3 52328422 52328422 G A GLYCTK 3'Flank 0.22 TCGA-IB-7651-01 3 52357823 52357823 G A DNAH1 Splice_Site p.X112_splice 0.15 TCGA-IB-7651-01 3 52357834 52357834 G A DNAH1 Missense_Mutation p.R115H 0.27 benign(0.002) TCGA-IB-7651-01 3 52357889 52357889 C T DNAH1 Silent p.T133T 0.18 TCGA-IB-7651-01 3 52383039 52383039 G A DNAH1 Missense_Mutation p.A748T 0.17 benign(0.207) TCGA-IB-7651-01 3 52389063 52389063 C A DNAH1 Missense_Mutation p.L1229M 0.18 benign(0.199) TCGA-IB-7651-01 3 52393941 52393941 C A DNAH1 Missense_Mutation p.L1473M 0.20 possibly_damaging(0.893) TCGA-IB-7651-01 3 52404631 52404631 C T DNAH1 Missense_Mutation p.L2133F 0.15 benign(0) TCGA-IB-7651-01 3 52418934 52418934 G A DNAH1 Missense_Mutation p.G2819R 0.19 benign(0.002) TCGA-IB-7651-01 3 52425296 52425296 C T DNAH1 Silent p.N3281N 0.21 TCGA-IB-7651-01 3 52429072 52429072 C T DNAH1 Silent p.P3655P 0.12 TCGA-IB-7651-01 3 52474045 52474045 G T SEMA3G Missense_Mutation p.L405M 0.22 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 52485422 52485422 G A TNNC1 Missense_Mutation p.R147C 0.16 deleterious(0) benign(0.398) TCGA-IB-7651-01 3 52485481 52485481 G A TNNC1 Missense_Mutation p.T127I 0.19 deleterious(0.01) benign(0.002) TCGA-IB-7651-01 3 52521339 52521339 C T NISCH Missense_Mutation p.R611W 0.17 deleterious(0.02) probably_damaging(0.948) TCGA-IB-7651-01 3 52521711 52521711 G A NISCH Missense_Mutation p.G735S 0.04 tolerated(0.5) benign(0.443) TCGA-IB-7651-01 3 52521950 52521950 G A NISCH Silent p.Q814Q 0.23 TCGA-IB-7651-01 3 52526255 52526255 G A NISCH Silent p.Q1424Q 0.20 TCGA-IB-7651-01 3 5252967 5252967 T C EDEM1 Intron 0.22 TCGA-IB-7651-01 3 52538065 52538065 G T STAB1 Missense_Mutation p.E348D 0.24 deleterious(0.02) possibly_damaging(0.529) TCGA-IB-7651-01 3 52539356 52539356 G A STAB1 Missense_Mutation p.A514T 0.20 tolerated(0.15) benign(0.052) TCGA-IB-7651-01 3 52542317 52542317 G A STAB1 Missense_Mutation p.G726E 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 52543325 52543325 C T STAB1 Nonsense_Mutation p.Q779* 0.17 TCGA-IB-7651-01 3 52550718 52550718 G A STAB1 Missense_Mutation p.D1433N 0.20 tolerated(0.29) benign(0.006) TCGA-IB-7651-01 3 52554039 52554039 G A STAB1 Missense_Mutation p.R1772Q 0.13 tolerated(0.51) benign(0.009) TCGA-IB-7651-01 3 52556666 52556666 G A STAB1 Missense_Mutation p.V2236I 0.19 tolerated(0.14) benign(0.22) TCGA-IB-7651-01 3 52556948 52556948 G A STAB1 Missense_Mutation p.R2301H 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 52558470 52558470 G T STAB1 3'UTR 0.18 TCGA-IB-7651-01 3 52558576 52558576 C T NT5DC2 Silent p.P528P 0.17 TCGA-IB-7651-01 3 52561315 52561315 G A NT5DC2 Missense_Mutation p.R372W 0.14 tolerated(0.16) possibly_damaging(0.809) TCGA-IB-7651-01 3 52568642 52568642 C A NT5DC2 5'Flank 0.21 TCGA-IB-7651-01 3 5257520 5257520 C T EDEM1 Missense_Mutation p.R631C 0.18 deleterious(0.01) possibly_damaging(0.772) TCGA-IB-7651-01 3 52620542 52620542 G A PBRM1 Missense_Mutation p.R1071C 0.21 deleterious(0) possibly_damaging(0.835) TCGA-IB-7651-01 3 52637690 52637690 G A PBRM1 Missense_Mutation p.R876C 0.15 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 3 52814339 52814339 T G ITIH1 Missense_Mutation p.S210A 0.19 deleterious(0.02) benign(0.1) TCGA-IB-7651-01 3 52831234 52831234 A G ITIH3 Missense_Mutation p.Y167C 0.08 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 52877775 52877775 G T TMEM110 Missense_Mutation p.L194M 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 52955765 52955765 G A SFMBT1 Missense_Mutation p.T405I 0.19 deleterious(0) benign(0.42) TCGA-IB-7651-01 3 53226308 53226308 C A PRKCD 3'UTR 0.18 TCGA-IB-7651-01 3 53265481 53265481 G A TKT Silent p.I286I 0.19 TCGA-IB-7651-01 3 53265548 53265548 G T TKT Missense_Mutation p.S264Y 0.16 deleterious(0.01) possibly_damaging(0.576) TCGA-IB-7651-01 3 53529248 53529248 G A CACNA1D Missense_Mutation p.D19N 0.05 tolerated_low_confidence(0.45) benign(0.003) TCGA-IB-7651-01 3 53684805 53684805 G T CACNA1D Splice_Site p.X162_splice 0.12 TCGA-IB-7651-01 3 53699719 53699719 G A CACNA1D Missense_Mutation p.A267T 0.16 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 3 53700441 53700441 A C CACNA1D Missense_Mutation p.E332A 0.17 tolerated(0.08) benign(0.107) TCGA-IB-7651-01 3 53837449 53837449 G A CACNA1D Splice_Site p.X1832_splice 0.21 TCGA-IB-7651-01 3 53853618 53853618 A C CHDH Missense_Mutation p.F402V 0.22 deleterious(0) probably_damaging(0.978) TCGA-IB-7651-01 3 53907062 53907062 C T ACTR8 Silent p.L386L 0.19 TCGA-IB-7651-01 3 53911410 53911410 A G ACTR8 Missense_Mutation p.L172S 0.17 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 3 54420803 54420803 T C CACNA2D3 Splice_Site p.X127_splice 0.27 TCGA-IB-7651-01 3 55021769 55021769 C T CACNA2D3 Silent p.G893G 0.16 TCGA-IB-7651-01 3 55107828 55107828 G A CACNA2D3 Missense_Mutation p.R1042H 0.18 deleterious(0) possibly_damaging(0.65) TCGA-IB-7651-01 3 55108327 55108327 G A CACNA2D3 3'UTR 0.13 TCGA-IB-7651-01 3 55508452 55508452 G T WNT5A Silent p.A199A 0.16 TCGA-IB-7651-01 3 55768825 55768825 G A ERC2 Nonsense_Mutation p.R896* 0.13 TCGA-IB-7651-01 3 56044551 56044551 C T ERC2 Missense_Mutation p.E616K 0.18 deleterious(0.02) benign(0.3) TCGA-IB-7651-01 3 56330455 56330455 C A ERC2 Missense_Mutation p.Q222H 0.21 tolerated(0.2) possibly_damaging(0.53) TCGA-IB-7651-01 3 56468991 56468991 A G ERC2 Silent p.P15P 0.15 TCGA-IB-7651-01 3 56653485 56653485 C T CCDC66 Silent p.I855I 0.21 TCGA-IB-7651-01 3 56667861 56667861 C A FAM208A Missense_Mutation p.K986N 0.19 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 3 57130285 57130285 G T IL17RD 3'UTR 0.16 TCGA-IB-7651-01 3 57132156 57132156 C T IL17RD Silent p.T525T 0.17 TCGA-IB-7651-01 3 57232919 57232919 G A HESX1 Silent p.S73S 0.19 TCGA-IB-7651-01 3 57294725 57294725 C T APPL1 Missense_Mutation p.R589W 0.16 deleterious(0) possibly_damaging(0.802) TCGA-IB-7651-01 3 57493472 57493472 T G DNAH12 Silent p.P265P 0.21 TCGA-IB-7651-01 3 57494905 57494905 C T DNAH12 Silent p.S168S 0.18 TCGA-IB-7651-01 3 57496520 57496520 A G DNAH12 Silent p.L156L 0.15 TCGA-IB-7651-01 3 57545197 57545197 G A PDE12 Intron 0.21 TCGA-IB-7651-01 3 57561333 57561333 G T ARF4 Missense_Mutation p.A133D 0.18 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-IB-7651-01 3 57616552 57616552 C A DENND6A Splice_Site p.X470_splice 0.21 TCGA-IB-7651-01 3 58178578 58178578 G A DNASE1L3 Intron 0.09 TCGA-IB-7651-01 3 58183663 58183663 C T DNASE1L3 Missense_Mutation p.V197I 0.18 deleterious(0.04) probably_damaging(0.999) TCGA-IB-7651-01 3 58242295 58242295 G T ABHD6 5'UTR 0.19 TCGA-IB-7651-01 3 58252923 58252923 C T ABHD6 Missense_Mutation p.R43W 0.18 deleterious(0) probably_damaging(0.937) TCGA-IB-7651-01 3 58260429 58260429 G T ABHD6 Nonsense_Mutation p.E190* 0.16 TCGA-IB-7651-01 3 58302232 58302232 C T RPP14 Intron 0.15 TCGA-IB-7651-01 3 58383343 58383343 T C PXK Silent p.S332S 0.18 TCGA-IB-7651-01 3 58395340 58395340 C T PXK Nonsense_Mutation p.R464* 0.18 TCGA-IB-7651-01 3 58486991 58486991 A G KCTD6 Missense_Mutation p.T116A 0.05 tolerated(0.74) benign(0.004) TCGA-IB-7651-01 3 58487184 58487184 G A KCTD6 Missense_Mutation p.G180E 0.19 tolerated(0.28) benign(0.351) TCGA-IB-7651-01 3 58512232 58512232 T C ACOX2 Missense_Mutation p.Y436C 0.20 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 3 58622881 58622881 C T FAM3D Missense_Mutation p.D149N 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-IB-7651-01 3 58739540 58739540 G A C3orf67 Missense_Mutation p.P512L 0.17 tolerated(0.36) benign(0.378) TCGA-IB-7651-01 3 58855183 58855183 A G C3orf67 Missense_Mutation p.S171P 0.23 tolerated(0.06) benign(0.248) TCGA-IB-7651-01 3 61547918 61547918 A C PTPRG 5'UTR 0.18 TCGA-IB-7651-01 3 61989075 61989075 C T PTPRG Silent p.G141G 0.20 TCGA-IB-7651-01 3 62153813 62153813 C T PTPRG Missense_Mutation p.P337S 0.19 tolerated(0.17) benign(0.18) TCGA-IB-7651-01 3 62259478 62259478 C T PTPRG Missense_Mutation p.P1142S 0.19 deleterious(0.02) probably_damaging(0.991) TCGA-IB-7651-01 3 62356929 62356929 G A FEZF2 Silent p.F361F 0.10 TCGA-IB-7651-01 3 62357998 62357998 C T FEZF2 Silent p.P182P 0.18 TCGA-IB-7651-01 3 62631410 62631410 C T CADPS Missense_Mutation p.A438T 0.18 deleterious(0) possibly_damaging(0.483) TCGA-IB-7651-01 3 63600932 63600932 T C SYNPR Silent p.A211A 0.21 TCGA-IB-7651-01 3 63823667 63823667 G A THOC7 Nonsense_Mutation p.R113* 0.17 TCGA-IB-7651-01 3 63981390 63981390 C T ATXN7 Missense_Mutation p.A631V 0.19 tolerated(0.14) benign(0.012) TCGA-IB-7651-01 3 64084844 64084844 G A PRICKLE2 Silent p.S806S 0.18 TCGA-IB-7651-01 3 64085074 64085074 G A PRICKLE2 Missense_Mutation p.R730W 0.19 deleterious(0.01) possibly_damaging(0.724) TCGA-IB-7651-01 3 64085153 64085153 G A PRICKLE2 Silent p.S703S 0.20 TCGA-IB-7651-01 3 64085191 64085191 G A PRICKLE2 Nonsense_Mutation p.R691* 0.19 TCGA-IB-7651-01 3 64138976 64138976 G A PRICKLE2 Silent p.F223F 0.18 TCGA-IB-7651-01 3 65341992 65341992 G T MAGI1 3'Flank 0.17 TCGA-IB-7651-01 3 65346807 65346807 C T MAGI1 Intron 0.15 TCGA-IB-7651-01 3 65415781 65415781 A C MAGI1 Silent p.V527V 0.15 TCGA-IB-7651-01 3 65479270 65479270 C T MAGI1 Missense_Mutation p.G156D 0.10 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 3 66024031 66024031 C T MAGI1 5'Flank 0.19 TCGA-IB-7651-01 3 66313765 66313765 G A SLC25A26 Missense_Mutation p.G139R 0.18 deleterious(0.03) probably_damaging(0.926) TCGA-IB-7651-01 3 66431186 66431186 G A LRIG1 Missense_Mutation p.A957V 0.04 tolerated(0.35) benign(0.001) TCGA-IB-7651-01 3 66436706 66436706 C T LRIG1 Silent p.Q496Q 0.18 TCGA-IB-7651-01 3 66436746 66436746 T C LRIG1 Intron 0.18 TCGA-IB-7651-01 3 66467583 66467583 C T LRIG1 Missense_Mutation p.C158Y 0.19 tolerated(0.81) benign(0.043) TCGA-IB-7651-01 3 67054530 67054530 G T KBTBD8 Missense_Mutation p.R380I 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 3 67058487 67058487 G A KBTBD8 Missense_Mutation p.R495H 0.17 deleterious(0.03) probably_damaging(0.97) TCGA-IB-7651-01 3 69027535 69027535 G A EOGT Silent p.G378G 0.27 TCGA-IB-7651-01 3 6903264 6903264 C T GRM7 Silent p.S63S 0.13 TCGA-IB-7651-01 3 6903328 6903328 G A GRM7 Missense_Mutation p.A85T 0.13 deleterious(0.04) probably_damaging(0.997) TCGA-IB-7651-01 3 6903438 6903438 T G GRM7 Silent p.T121T 0.20 TCGA-IB-7651-01 3 69087861 69087861 C A TMF1 Missense_Mutation p.D669Y 0.18 deleterious(0) possibly_damaging(0.806) TCGA-IB-7651-01 3 69168087 69168087 C T LMOD3 Silent p.S473S 0.18 TCGA-IB-7651-01 3 69169146 69169146 T G LMOD3 Missense_Mutation p.K120N 0.17 tolerated(0.28) benign(0.259) TCGA-IB-7651-01 3 69230103 69230103 G T FRMD4B Missense_Mutation p.A933E 0.19 tolerated(0.97) benign(0.16) TCGA-IB-7651-01 3 69928347 69928347 G A MITF Missense_Mutation p.R56H 0.20 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 3 69990401 69990401 C T MITF Silent p.I227I 0.19 TCGA-IB-7651-01 3 70014281 70014281 A G MITF Missense_Mutation p.D482G 0.20 deleterious(0.04) possibly_damaging(0.597) TCGA-IB-7651-01 3 70014328 70014328 T C MITF Missense_Mutation p.S498P 0.19 deleterious(0.02) benign(0.185) TCGA-IB-7651-01 3 71008431 71008431 G A FOXP1 Silent p.Y669Y 0.16 TCGA-IB-7651-01 3 71026839 71026839 G A FOXP1 Silent p.N463N 0.18 TCGA-IB-7651-01 3 71096168 71096168 G T FOXP1 Missense_Mutation p.L199M 0.22 tolerated(0.05) possibly_damaging(0.665) TCGA-IB-7651-01 3 72890250 72890250 C T SHQ1 Silent p.P144P 0.17 TCGA-IB-7651-01 3 73111947 73111947 G A EBLN2 Missense_Mutation p.A239T 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.787) TCGA-IB-7651-01 3 73432936 73432936 G A PDZRN3 Silent p.S927S 0.18 TCGA-IB-7651-01 3 73433199 73433199 G A PDZRN3 Missense_Mutation p.R840W 0.20 deleterious(0) possibly_damaging(0.582) TCGA-IB-7651-01 3 73433639 73433639 C T PDZRN3 Missense_Mutation p.R693H 0.18 deleterious(0.02) benign(0.081) TCGA-IB-7651-01 3 74418379 74418379 G A CNTN3 Nonsense_Mutation p.R303* 0.13 TCGA-IB-7651-01 3 74418390 74418390 G T CNTN3 Missense_Mutation p.A299D 0.13 deleterious(0) possibly_damaging(0.904) TCGA-IB-7651-01 3 74420531 74420531 G A CNTN3 Silent p.I158I 0.14 TCGA-IB-7651-01 3 75471222 75471222 G A FAM86DP RNA 0.13 TCGA-IB-7651-01 3 75471286 75471286 G A FAM86DP RNA 0.17 TCGA-IB-7651-01 3 75475623 75475623 G A FAM86DP RNA 0.07 TCGA-IB-7651-01 3 75475629 75475629 C T FAM86DP RNA 0.15 TCGA-IB-7651-01 3 75986709 75986709 T C ROBO2 Missense_Mutation p.M22T 0.09 deleterious_low_confidence(0.03) unknown(0) TCGA-IB-7651-01 3 7620460 7620460 G T GRM7 Missense_Mutation p.A623S 0.09 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 3 7620618 7620618 G A GRM7 Silent p.T675T 0.10 TCGA-IB-7651-01 3 7620670 7620670 G A GRM7 Missense_Mutation p.A693T 0.18 tolerated(0.27) benign(0.044) TCGA-IB-7651-01 3 7620917 7620917 T C GRM7 Missense_Mutation p.I775T 0.21 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 3 77147265 77147265 G A ROBO2 Silent p.A70A 0.06 TCGA-IB-7651-01 3 77645811 77645811 C T ROBO2 Missense_Mutation p.P938S 0.18 deleterious(0.03) possibly_damaging(0.641) TCGA-IB-7651-01 3 77671486 77671486 C T ROBO2 Silent p.A1237A 0.17 TCGA-IB-7651-01 3 78647997 78647997 T C ROBO1 3'UTR 0.19 TCGA-IB-7651-01 3 78676482 78676482 C A ROBO1 Missense_Mutation p.Q1288H 0.12 tolerated(0.12) benign(0.001) TCGA-IB-7651-01 3 78680428 78680428 C A ROBO1 Missense_Mutation p.R1170I 0.15 deleterious(0.02) benign(0.36) TCGA-IB-7651-01 3 78701024 78701024 A C ROBO1 Missense_Mutation p.I890M 0.19 deleterious(0.01) probably_damaging(0.964) TCGA-IB-7651-01 3 78711157 78711157 C T ROBO1 Missense_Mutation p.E692K 0.20 tolerated(0.07) probably_damaging(0.988) TCGA-IB-7651-01 3 78719257 78719257 G A ROBO1 Nonsense_Mutation p.R513* 0.11 TCGA-IB-7651-01 3 81627222 81627222 G A GBE1 Missense_Mutation p.A491V 0.21 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 3 81699009 81699009 C T GBE1 Missense_Mutation p.V165I 0.16 tolerated(0.13) benign(0.001) TCGA-IB-7651-01 3 81810581 81810581 T C GBE1 Missense_Mutation p.R30G 0.18 tolerated(0.51) benign(0.021) TCGA-IB-7651-01 3 81810601 81810601 G A GBE1 Missense_Mutation p.A23V 0.18 tolerated(0.6) benign(0) TCGA-IB-7651-01 3 8590439 8590439 C T LMCD1 Silent p.S191S 0.18 TCGA-IB-7651-01 3 85961642 85961642 G A CADM2 Missense_Mutation p.E210K 0.16 tolerated(0.15) benign(0.091) TCGA-IB-7651-01 3 86010637 86010637 G A CADM2 Nonsense_Mutation p.W263* 0.17 TCGA-IB-7651-01 3 86116067 86116067 G C CADM2 3'Flank 0.17 TCGA-IB-7651-01 3 8672596 8672596 C T SSUH2 Silent p.P140P 0.14 TCGA-IB-7651-01 3 87017995 87017995 G A VGLL3 Missense_Mutation p.R228W 0.17 deleterious(0.04) possibly_damaging(0.634) TCGA-IB-7651-01 3 87027680 87027680 C T VGLL3 Nonsense_Mutation p.W133* 0.14 TCGA-IB-7651-01 3 87294981 87294981 G T CHMP2B Missense_Mutation p.V82F 0.18 tolerated(0.08) benign(0.154) TCGA-IB-7651-01 3 8794867 8794867 G T OXTR Missense_Mutation p.S322R 0.06 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 3 88040023 88040023 T C HTR1F Missense_Mutation p.S42P 0.11 deleterious(0.02) possibly_damaging(0.781) TCGA-IB-7651-01 3 88188405 88188405 A G ZNF654 5'UTR 0.18 TCGA-IB-7651-01 3 88188660 88188660 C T ZNF654 Missense_Mutation p.T67I 0.20 tolerated(0.47) benign(0.001) TCGA-IB-7651-01 3 88199082 88199082 A G C3orf38 5'UTR 0.14 TCGA-IB-7651-01 3 88205397 88205397 G A C3orf38 Missense_Mutation p.R201H 0.19 deleterious(0.03) benign(0.132) TCGA-IB-7651-01 3 88205716 88205716 A G C3orf38 Silent p.V307V 0.10 TCGA-IB-7651-01 3 89528725 89528725 A G EPHA3 3'UTR 0.22 TCGA-IB-7651-01 3 9032472 9032472 G A SRGAP3 Silent p.G870G 0.14 TCGA-IB-7651-01 3 9101937 9101937 T C SRGAP3 Missense_Mutation p.H260R 0.04 tolerated(0.13) probably_damaging(0.985) TCGA-IB-7651-01 3 93593078 93593078 G A PROS1 3'UTR 0.15 TCGA-IB-7651-01 3 93611924 93611924 G A PROS1 Silent p.G336G 0.20 TCGA-IB-7651-01 3 93617301 93617301 C A PROS1 Missense_Mutation p.K280N 0.19 tolerated(0.47) possibly_damaging(0.548) TCGA-IB-7651-01 3 9486952 9486952 C T SETD5 Missense_Mutation p.P470S 0.25 tolerated(0.08) benign(0.009) TCGA-IB-7651-01 3 9506325 9506325 C T SETD5 Missense_Mutation p.A898V 0.17 deleterious(0.01) benign(0.26) TCGA-IB-7651-01 3 9514972 9514972 C A SETD5 Missense_Mutation p.A1083D 0.16 tolerated(0.2) benign(0.112) TCGA-IB-7651-01 3 9517250 9517250 G T SETD5 Missense_Mutation p.Q1268H 0.10 tolerated(0.28) benign(0.347) TCGA-IB-7651-01 3 96706372 96706372 G T EPHA6 Nonsense_Mutation p.E217* 0.07 TCGA-IB-7651-01 3 96706450 96706450 G A EPHA6 Missense_Mutation p.D243N 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 9726291 9726291 C T MTMR14 Silent p.H329H 0.17 TCGA-IB-7651-01 3 9726338 9726338 G A MTMR14 Missense_Mutation p.R345H 0.18 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 3 9746668 9746668 C T CPNE9 Missense_Mutation p.R84C 0.16 deleterious(0) probably_damaging(0.939) TCGA-IB-7651-01 3 97596325 97596325 A C CRYBG3 Missense_Mutation p.E148A 0.19 deleterious(0) probably_damaging(0.929) TCGA-IB-7651-01 3 97655719 97655719 G A CRYBG3 Nonsense_Mutation p.W876* 0.18 TCGA-IB-7651-01 3 97711701 97711701 C A GABRR3 3'Flank 0.18 TCGA-IB-7651-01 3 9771412 9771412 C A CPNE9 3'UTR 0.27 TCGA-IB-7651-01 3 97720488 97720488 C T GABRR3 RNA 0.21 TCGA-IB-7651-01 3 9783725 9783725 T A BRPF1 Missense_Mutation p.I624N 0.15 deleterious(0.02) benign(0.036) TCGA-IB-7651-01 3 97851957 97851957 G T OR5H1 Missense_Mutation p.G139V 0.14 tolerated(0.06) benign(0.005) TCGA-IB-7651-01 3 9786068 9786068 T G BRPF1 Missense_Mutation p.S932R 0.21 tolerated(0.06) probably_damaging(0.994) TCGA-IB-7651-01 3 97868310 97868310 G A OR5H14 Silent p.L27L 0.09 TCGA-IB-7651-01 3 97983282 97983282 C A OR5H6 Missense_Mutation p.L52I 0.09 deleterious(0.04) benign(0.033) TCGA-IB-7651-01 3 9807492 9807492 G T OGG1 Splice_Site p.X317_splice 0.11 TCGA-IB-7651-01 3 9807626 9807626 C A OGG1 Missense_Mutation p.S361Y 0.20 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-IB-7651-01 3 98188581 98188581 G A OR5K1 Missense_Mutation p.R54Q 0.19 tolerated(0.18) benign(0.001) TCGA-IB-7651-01 3 9821956 9821956 C T TADA3 3'UTR 0.15 TCGA-IB-7651-01 3 98235513 98235513 C T CLDND1 Missense_Mutation p.R274H 0.17 deleterious(0.04) benign(0.116) TCGA-IB-7651-01 3 98518287 98518287 G A DCBLD2 Missense_Mutation p.P753S 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 98518306 98518306 G A DCBLD2 Silent p.D746D 0.18 TCGA-IB-7651-01 3 98541110 98541110 A C DCBLD2 Nonsense_Mutation p.Y264* 0.19 TCGA-IB-7651-01 3 98568340 98568340 C A DCBLD2 Missense_Mutation p.G179V 0.17 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 3 9862345 9862345 C T TTLL3 Silent p.I358I 0.18 TCGA-IB-7651-01 3 9874919 9874919 C T TTLL3 Silent p.G705G 0.22 TCGA-IB-7651-01 3 99514881 99514881 C T COL8A1 Silent p.D712D 0.18 TCGA-IB-7651-01 3 99567134 99567134 C A FILIP1L Intron 0.19 TCGA-IB-7651-01 3 99567303 99567303 C T FILIP1L Missense_Mutation p.A1073T 0.18 tolerated(0.13) benign(0.066) TCGA-IB-7651-01 3 99567800 99567800 G A FILIP1L Missense_Mutation p.T907I 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 3 9960032 9960032 G A IL17RC Silent p.E169E 0.19 TCGA-IB-7651-01 3 9970068 9970068 G A IL17RC Silent p.P390P 0.20 TCGA-IB-7651-01 3 9972601 9972601 C T IL17RC Missense_Mutation p.A525V 0.18 tolerated(0.31) benign(0.014) TCGA-IB-7651-01 3 9982832 9982832 G T CRELD1 Missense_Mutation p.E225D 0.17 tolerated(0.17) benign(0.023) TCGA-IB-7651-01 3 9988167 9988167 G A PRRT3 Missense_Mutation p.A897V 0.12 tolerated(0.1) possibly_damaging(0.582) TCGA-IB-7651-01 3 9991052 9991052 G A PRRT3 Missense_Mutation p.P250S 0.17 tolerated_low_confidence(0.11) benign(0.37) TCGA-IB-7651-01 4 100057801 100057801 G A ADH4 Missense_Mutation p.T133I 0.20 deleterious(0) probably_damaging(0.984) TCGA-IB-7651-01 4 100128629 100128629 C T ADH6 Missense_Mutation p.R313H 0.15 deleterious(0.01) probably_damaging(0.995) TCGA-IB-7651-01 4 100208091 100208091 C A ADH1A Missense_Mutation p.V59L 0.20 tolerated(0.44) benign(0) TCGA-IB-7651-01 4 100208167 100208167 T G ADH1A Intron 0.21 TCGA-IB-7651-01 4 100231991 100231991 G A ADH1B Missense_Mutation p.A345V 0.20 tolerated(0.19) benign(0.001) TCGA-IB-7651-01 4 100232703 100232703 G A ADH1B Silent p.R313R 0.19 TCGA-IB-7651-01 4 10027631 10027631 C A SLC2A9 5'Flank 0.22 TCGA-IB-7651-01 4 100341725 100341725 A G ADH7 Missense_Mutation p.Y284H 0.17 deleterious(0) probably_damaging(0.983) TCGA-IB-7651-01 4 100341936 100341936 G T ADH7 Silent p.S213S 0.18 TCGA-IB-7651-01 4 100349765 100349765 C T ADH7 Missense_Mutation p.R68H 0.06 tolerated(1) benign(0.004) TCGA-IB-7651-01 4 100470276 100470276 G A TRMT10A Missense_Mutation p.T330I 0.18 deleterious_low_confidence(0.01) benign(0.036) TCGA-IB-7651-01 4 100479236 100479236 G A TRMT10A Silent p.D106D 0.16 TCGA-IB-7651-01 4 100761522 100761522 T A DAPP1 Missense_Mutation p.S101T 0.18 tolerated(0.43) benign(0.057) TCGA-IB-7651-01 4 100805266 100805266 C T LAMTOR3 Missense_Mutation p.R85H 0.23 tolerated(0.2) benign(0.007) TCGA-IB-7651-01 4 10080531 10080531 A G WDR1 Missense_Mutation p.V460A 0.18 tolerated(0.31) benign(0.001) TCGA-IB-7651-01 4 100870520 100870520 T C H2AFZ Silent p.R35R 0.12 TCGA-IB-7651-01 4 100870530 100870530 C T H2AFZ Missense_Mutation p.R32H 0.14 tolerated(0.08) benign(0.046) TCGA-IB-7651-01 4 100870869 100870869 C T H2AFZ Missense_Mutation p.G11E 0.17 deleterious(0.01) unknown(0) TCGA-IB-7651-01 4 10100706 10100706 T C WDR1 Missense_Mutation p.Y96C 0.13 tolerated(0.16) probably_damaging(0.994) TCGA-IB-7651-01 4 1018897 1018897 G A FGFRL1 Missense_Mutation p.R426H 0.15 tolerated(0.14) benign(0.116) TCGA-IB-7651-01 4 101947056 101947056 T C PPP3CA Missense_Mutation p.D511G 0.18 tolerated_low_confidence(0.08) unknown(0) TCGA-IB-7651-01 4 102117166 102117166 G A PPP3CA Silent p.L56L 0.18 TCGA-IB-7651-01 4 102751340 102751340 T C BANK1 Missense_Mutation p.V149A 0.21 deleterious(0) possibly_damaging(0.648) TCGA-IB-7651-01 4 103534584 103534584 C A NFKB1 Silent p.V865V 0.14 TCGA-IB-7651-01 4 103611867 103611867 C A MANBA Missense_Mutation p.K245N 0.18 tolerated(0.11) benign(0.022) TCGA-IB-7651-01 4 103718527 103718527 G A UBE2D3 3'UTR 0.18 TCGA-IB-7651-01 4 103947602 103947602 G A SLC9B2 Silent p.G513G 0.20 TCGA-IB-7651-01 4 103970160 103970160 C A SLC9B2 Missense_Mutation p.K201N 0.10 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 4 103971468 103971468 A G SLC9B2 Missense_Mutation p.W172R 0.17 deleterious(0.02) probably_damaging(0.996) TCGA-IB-7651-01 4 104003289 104003289 G A BDH2 Silent p.F211F 0.18 TCGA-IB-7651-01 4 104041484 104041484 G A CENPE Nonsense_Mutation p.R2384* 0.15 TCGA-IB-7651-01 4 104074400 104074400 C T CENPE Missense_Mutation p.G1014D 0.13 benign(0.001) TCGA-IB-7651-01 4 10445398 10445398 G A ZNF518B Missense_Mutation p.A852V 0.22 deleterious(0.01) benign(0.115) TCGA-IB-7651-01 4 104577398 104577398 C A TACR3 Nonsense_Mutation p.G281* 0.19 TCGA-IB-7651-01 4 105412215 105412215 G A CXXC4 Missense_Mutation p.P249S 0.04 deleterious(0) probably_damaging(0.964) TCGA-IB-7651-01 4 106156867 106156867 C A TET2 Missense_Mutation p.L590I 0.09 deleterious(0) possibly_damaging(0.878) TCGA-IB-7651-01 4 106600771 106600771 A G ARHGEF38 3'UTR 0.15 TCGA-IB-7651-01 4 106640301 106640301 A G GSTCD Missense_Mutation p.T171A 0.22 tolerated(1) benign(0.001) TCGA-IB-7651-01 4 106640462 106640462 G T GSTCD Missense_Mutation p.Q224H 0.15 tolerated(0.16) benign(0.003) TCGA-IB-7651-01 4 1066789 1066789 T C RNF212 Missense_Mutation p.Y256C 0.17 tolerated_low_confidence(0.3) benign(0) TCGA-IB-7651-01 4 106858269 106858269 G A NPNT Silent p.P153P 0.20 TCGA-IB-7651-01 4 107170109 107170109 G T TBCK Missense_Mutation p.A230D 0.19 tolerated(0.06) possibly_damaging(0.71) TCGA-IB-7651-01 4 107249377 107249377 C T AIMP1 Missense_Mutation p.A147V 0.07 tolerated(0.26) benign(0.002) TCGA-IB-7651-01 4 108535481 108535481 T G PAPSS1 Missense_Mutation p.K600T 0.19 tolerated(0.38) benign(0.026) TCGA-IB-7651-01 4 108615089 108615089 G T PAPSS1 Nonsense_Mutation p.C83* 0.15 TCGA-IB-7651-01 4 108969744 108969744 G A LEF1 3'UTR 0.24 TCGA-IB-7651-01 4 109010379 109010379 G A LEF1 Missense_Mutation p.A150V 0.17 tolerated(0.51) benign(0.089) TCGA-IB-7651-01 4 109546294 109546294 G A RPL34 Missense_Mutation p.A94T 0.10 deleterious(0) possibly_damaging(0.609) TCGA-IB-7651-01 4 109681389 109681389 C T ETNPPL Missense_Mutation p.E44K 0.18 deleterious(0.02) probably_damaging(0.986) TCGA-IB-7651-01 4 109769940 109769940 C A COL25A1 Missense_Mutation p.G470V 0.21 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 4 109773399 109773399 C T COL25A1 Missense_Mutation p.G461E 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 110452568 110452568 C T SEC24B Missense_Mutation p.R1094W 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 110635372 110635373 - T PLA2G12A 3'UTR 0.24 TCGA-IB-7651-01 4 110639872 110639872 C T PLA2G12A Silent p.P84P 0.17 TCGA-IB-7651-01 4 110662246 110662246 C T CFI Missense_Mutation p.D519N 0.17 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 4 110791482 110791482 A G LRIT3 Missense_Mutation p.D526G 0.17 deleterious(0) probably_damaging(0.95) TCGA-IB-7651-01 4 110791701 110791701 T G LRIT3 Missense_Mutation p.I599S 0.16 deleterious(0) probably_damaging(0.934) TCGA-IB-7651-01 4 110864531 110864531 C T EGF Missense_Mutation p.S150F 0.20 deleterious(0.01) probably_damaging(0.91) TCGA-IB-7651-01 4 110897320 110897320 C T EGF Missense_Mutation p.A661V 0.21 deleterious(0.05) possibly_damaging(0.794) TCGA-IB-7651-01 4 110972708 110972708 G A ELOVL6 Missense_Mutation p.A195V 0.19 tolerated(0.05) probably_damaging(0.922) TCGA-IB-7651-01 4 111397683 111397683 G A ENPEP Missense_Mutation p.G38D 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 111431456 111431456 G A ENPEP Missense_Mutation p.G417E 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 111436590 111436590 G A ENPEP Missense_Mutation p.G501R 0.13 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 4 111539229 111539229 C T PITX2 3'UTR 0.07 TCGA-IB-7651-01 4 113199274 113199274 C T TIFA Missense_Mutation p.S100N 0.17 tolerated(1) benign(0.001) TCGA-IB-7651-01 4 113199287 113199287 G A TIFA Silent p.L96L 0.16 TCGA-IB-7651-01 4 113303625 113303625 A G ALPK1 Missense_Mutation p.K65E 0.17 deleterious(0) probably_damaging(0.936) TCGA-IB-7651-01 4 113332966 113332966 C T ALPK1 Intron 0.20 TCGA-IB-7651-01 4 113352444 113352444 A C ALPK1 Missense_Mutation p.S581R 0.18 deleterious(0.03) benign(0.035) TCGA-IB-7651-01 4 113352781 113352781 G A ALPK1 Missense_Mutation p.G693E 0.18 tolerated(0.28) benign(0.014) TCGA-IB-7651-01 4 113362487 113362487 G T ALPK1 3'UTR 0.07 TCGA-IB-7651-01 4 113362543 113362543 G A ALPK1 3'UTR 0.13 TCGA-IB-7651-01 4 113502905 113502905 G T C4orf21 Missense_Mutation p.T1451N 0.18 tolerated(0.3) benign(0.027) TCGA-IB-7651-01 4 113538718 113538718 G A C4orf21 Missense_Mutation p.S827F 0.17 deleterious(0.02) probably_damaging(0.957) TCGA-IB-7651-01 4 113539394 113539394 T C C4orf21 Missense_Mutation p.T602A 0.18 tolerated(0.72) benign(0.058) TCGA-IB-7651-01 4 113970914 113970914 C T ANK2 Silent p.S10S 0.12 TCGA-IB-7651-01 4 11400937 11400937 G A HS3ST1 Silent p.V231V 0.14 TCGA-IB-7651-01 4 11401429 11401429 C T HS3ST1 Silent p.T67T 0.17 TCGA-IB-7651-01 4 114158175 114158175 G T ANK2 Missense_Mutation p.Q172H 0.16 probably_damaging(0.996) TCGA-IB-7651-01 4 114158312 114158312 C A ANK2 Missense_Mutation p.A218D 0.16 probably_damaging(1) TCGA-IB-7651-01 4 114161660 114161660 A G ANK2 Missense_Mutation p.H238R 0.17 probably_damaging(1) TCGA-IB-7651-01 4 114161720 114161720 C T ANK2 Missense_Mutation p.A258V 0.08 benign(0.249) TCGA-IB-7651-01 4 114163362 114163362 T C ANK2 Silent p.T296T 0.19 TCGA-IB-7651-01 4 114257193 114257193 C T ANK2 Missense_Mutation p.R1191W 0.07 probably_damaging(0.999) TCGA-IB-7651-01 4 114264287 114264287 C T ANK2 Silent p.L1413L 0.17 TCGA-IB-7651-01 4 114279143 114279143 C T ANK2 Silent p.S3123S 0.17 TCGA-IB-7651-01 4 114282046 114282046 C A ANK2 Missense_Mutation p.S3583R 0.09 benign(0.331) TCGA-IB-7651-01 4 114378475 114378475 G T CAMK2D Intron 0.17 TCGA-IB-7651-01 4 114430832 114430832 C A CAMK2D Splice_Site p.X316_splice 0.09 TCGA-IB-7651-01 4 115769425 115769425 G C NDST4 Missense_Mutation p.T629R 0.21 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 4 115856370 115856370 G T NDST4 Missense_Mutation p.L510I 0.22 tolerated(0.08) probably_damaging(0.967) TCGA-IB-7651-01 4 1165096 1165096 G A SPON2 Silent p.T133T 0.23 TCGA-IB-7651-01 4 118005374 118005374 C A TRAM1L1 3'UTR 0.19 TCGA-IB-7651-01 4 118006158 118006158 A C TRAM1L1 Missense_Mutation p.F131C 0.18 deleterious(0.05) possibly_damaging(0.778) TCGA-IB-7651-01 4 118975655 118975655 C T NDST3 Missense_Mutation p.P197L 0.17 deleterious(0) possibly_damaging(0.447) TCGA-IB-7651-01 4 119145758 119145758 C T NDST3 Missense_Mutation p.T551I 0.11 tolerated(0.05) probably_damaging(0.991) TCGA-IB-7651-01 4 119200407 119200407 A G PRSS12 3'Flank 0.18 TCGA-IB-7651-01 4 119203366 119203366 C A PRSS12 Missense_Mutation p.A785S 0.17 tolerated(0.6) benign(0.144) TCGA-IB-7651-01 4 119234403 119234403 A G PRSS12 Missense_Mutation p.V481A 0.15 tolerated(0.53) benign(0.394) TCGA-IB-7651-01 4 119253000 119253000 C T PRSS12 Missense_Mutation p.R281H 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 119472291 119472291 C T CEP170P1 RNA 0.12 TCGA-IB-7651-01 4 119978917 119978917 A G SYNPO2 Missense_Mutation p.N1205S 0.18 tolerated(1) benign(0.002) TCGA-IB-7651-01 4 120072119 120072119 C T MYOZ2 Silent p.L57L 0.19 TCGA-IB-7651-01 4 120079184 120079184 T G MYOZ2 Missense_Mutation p.I85S 0.17 tolerated(0.37) benign(0.158) TCGA-IB-7651-01 4 120177606 120177606 G A USP53 Missense_Mutation p.R166H 0.18 deleterious(0.05) benign(0.365) TCGA-IB-7651-01 4 120190845 120190845 G A USP53 Splice_Site p.X430_splice 0.19 TCGA-IB-7651-01 4 120446754 120446754 G A PDE5A Missense_Mutation p.R577W 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 4 120463721 120463721 C T PDE5A Missense_Mutation p.E489K 0.06 deleterious(0.03) possibly_damaging(0.895) TCGA-IB-7651-01 4 120474867 120474867 C T PDE5A Missense_Mutation p.A412T 0.18 tolerated(0.62) benign(0.367) TCGA-IB-7651-01 4 120981442 120981442 G A MAD2L1 Missense_Mutation p.S150L 0.07 deleterious(0.02) benign(0.209) TCGA-IB-7651-01 4 121702402 121702402 A G PRDM5 Silent p.L447L 0.15 TCGA-IB-7651-01 4 121739544 121739544 C T PRDM5 Missense_Mutation p.G205E 0.20 deleterious(0.04) probably_damaging(0.943) TCGA-IB-7651-01 4 121774643 121774643 C T PRDM5 Missense_Mutation p.R77Q 0.18 deleterious(0.01) benign(0.408) TCGA-IB-7651-01 4 121957901 121957901 G T NDNF Missense_Mutation p.L409I 0.20 deleterious(0.04) benign(0.012) TCGA-IB-7651-01 4 121958586 121958586 T G NDNF Silent p.P180P 0.21 TCGA-IB-7651-01 4 122075755 122075755 G A TNIP3 Missense_Mutation p.A225V 0.16 tolerated(1) benign(0.002) TCGA-IB-7651-01 4 122078275 122078275 T G TNIP3 Missense_Mutation p.T190P 0.04 tolerated(0.28) possibly_damaging(0.563) TCGA-IB-7651-01 4 122732759 122732759 G A EXOSC9 Missense_Mutation p.A254T 0.22 tolerated(0.18) possibly_damaging(0.479) TCGA-IB-7651-01 4 122740651 122740651 C T CCNA2 Missense_Mutation p.R293K 0.08 tolerated(0.1) benign(0.341) TCGA-IB-7651-01 4 122743722 122743722 G A CCNA2 Missense_Mutation p.A98V 0.19 tolerated(0.1) benign(0.397) TCGA-IB-7651-01 4 122743779 122743779 G T CCNA2 Missense_Mutation p.P79H 0.18 deleterious(0.01) benign(0.289) TCGA-IB-7651-01 4 122782737 122782737 G T BBS7 Missense_Mutation p.S88Y 0.06 deleterious(0.01) possibly_damaging(0.861) TCGA-IB-7651-01 4 123249281 123249281 A G KIAA1109 Missense_Mutation p.D3673G 0.11 possibly_damaging(0.501) TCGA-IB-7651-01 4 123258035 123258035 G A KIAA1109 Splice_Site p.X4004_splice 0.20 TCGA-IB-7651-01 4 123258084 123258084 C A KIAA1109 Missense_Mutation p.P4020H 0.09 benign(0.299) TCGA-IB-7651-01 4 123274089 123274089 C T KIAA1109 Missense_Mutation p.P4627L 0.18 probably_damaging(0.999) TCGA-IB-7651-01 4 123277838 123277838 G A KIAA1109 Missense_Mutation p.V4855M 0.17 probably_damaging(1) TCGA-IB-7651-01 4 123302264 123302264 C T ADAD1 Missense_Mutation p.P97L 0.15 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 4 123342523 123342523 C T ADAD1 Missense_Mutation p.A532V 0.07 tolerated(0.69) benign(0.084) TCGA-IB-7651-01 4 123663084 123663084 C A BBS12 Missense_Mutation p.H13N 0.18 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 4 123664001 123664001 C T BBS12 Silent p.C318C 0.15 TCGA-IB-7651-01 4 123813399 123813399 C T FGF2 Nonsense_Mutation p.R239* 0.14 TCGA-IB-7651-01 4 123813561 123813561 C A FGF2 3'UTR 0.14 TCGA-IB-7651-01 4 123814387 123814387 A - NUDT6 Intron 0.17 TCGA-IB-7651-01 4 123818770 123818770 G T FGF2 3'UTR 0.17 TCGA-IB-7651-01 4 123855775 123855775 G T SPATA5 Missense_Mutation p.E343D 0.20 tolerated(0.26) benign(0) TCGA-IB-7651-01 4 124177183 124177183 C T SPATA5 Missense_Mutation p.P785S 0.13 deleterious(0.02) possibly_damaging(0.841) TCGA-IB-7651-01 4 124177323 124177323 C A SPATA5 Nonsense_Mutation p.Y831* 0.17 TCGA-IB-7651-01 4 1245007 1245007 C T CTBP1 5'Flank 0.22 TCGA-IB-7651-01 4 125590747 125590747 G A ANKRD50 Nonsense_Mutation p.R1229* 0.19 TCGA-IB-7651-01 4 125592066 125592066 G A ANKRD50 Missense_Mutation p.A789V 0.19 deleterious(0) probably_damaging(0.968) TCGA-IB-7651-01 4 125599995 125599995 G T ANKRD50 Missense_Mutation p.S193Y 0.20 deleterious(0) probably_damaging(0.944) TCGA-IB-7651-01 4 126238257 126238257 C T FAT4 Missense_Mutation p.R231W 0.21 possibly_damaging(0.901) TCGA-IB-7651-01 4 126239005 126239005 A G FAT4 Missense_Mutation p.Y480C 0.18 benign(0.169) TCGA-IB-7651-01 4 126239656 126239656 A G FAT4 Missense_Mutation p.H697R 0.19 benign(0.06) TCGA-IB-7651-01 4 126240358 126240358 G T FAT4 Missense_Mutation p.S931I 0.19 probably_damaging(0.969) TCGA-IB-7651-01 4 126240893 126240893 C T FAT4 Silent p.F1109F 0.20 TCGA-IB-7651-01 4 126241875 126241875 A G FAT4 Missense_Mutation p.T1437A 0.08 benign(0.042) TCGA-IB-7651-01 4 126242165 126242165 C T FAT4 Silent p.N1533N 0.18 TCGA-IB-7651-01 4 126242264 126242264 G T FAT4 Missense_Mutation p.E1566D 0.18 probably_damaging(0.96) TCGA-IB-7651-01 4 126242553 126242553 G A FAT4 Missense_Mutation p.V1663M 0.19 probably_damaging(0.984) TCGA-IB-7651-01 4 126336699 126336699 T C FAT4 Missense_Mutation p.V2194A 0.20 benign(0.026) TCGA-IB-7651-01 4 126336858 126336858 T C FAT4 Missense_Mutation p.I2247T 0.21 probably_damaging(0.951) TCGA-IB-7651-01 4 126369632 126369632 G A FAT4 Silent p.A2487A 0.14 TCGA-IB-7651-01 4 126371043 126371043 C T FAT4 Nonsense_Mutation p.R2958* 0.16 TCGA-IB-7651-01 4 126371527 126371527 C T FAT4 Missense_Mutation p.A3119V 0.09 benign(0.403) TCGA-IB-7651-01 4 126412394 126412394 G A FAT4 Missense_Mutation p.C4806Y 0.06 probably_damaging(0.994) TCGA-IB-7651-01 4 126412738 126412738 C A FAT4 Missense_Mutation p.L4921I 0.20 benign(0.232) TCGA-IB-7651-01 4 128625399 128625399 A G INTU Missense_Mutation p.D507G 0.22 tolerated(0.31) benign(0.012) TCGA-IB-7651-01 4 128632105 128632105 G T INTU Missense_Mutation p.V803F 0.22 deleterious(0) probably_damaging(0.956) TCGA-IB-7651-01 4 128688339 128688339 C T SLC25A31 Silent p.Y199Y 0.16 TCGA-IB-7651-01 4 128715243 128715243 C T HSPA4L Missense_Mutation p.S40L 0.16 deleterious(0.02) benign(0.123) TCGA-IB-7651-01 4 128815033 128815033 C A PLK4 Silent p.P853P 0.17 TCGA-IB-7651-01 4 128841803 128841803 A C MFSD8 Nonsense_Mutation p.Y513* 0.18 TCGA-IB-7651-01 4 129012165 129012165 G A LARP1B Missense_Mutation p.R123Q 0.18 tolerated(0.06) benign(0.023) TCGA-IB-7651-01 4 129043322 129043322 A T LARP1B Missense_Mutation p.E501D 0.17 tolerated(0.12) benign(0.002) TCGA-IB-7651-01 4 129131279 129131279 C T LARP1B 3'UTR 0.15 TCGA-IB-7651-01 4 129783239 129783239 G A JADE1 Nonsense_Mutation p.W454* 0.22 TCGA-IB-7651-01 4 129793447 129793447 G A JADE1 3'UTR 0.12 TCGA-IB-7651-01 4 130032917 130032917 C A C4orf33 Missense_Mutation p.L191M 0.16 deleterious(0.02) benign(0.43) TCGA-IB-7651-01 4 1305803 1305803 G A MAEA Missense_Mutation p.A36T 0.18 deleterious(0.03) benign(0.426) TCGA-IB-7651-01 4 13338934 13338934 A G HSP90AB2P RNA 0.12 TCGA-IB-7651-01 4 13370154 13370154 G T RAB28 3'UTR 0.18 TCGA-IB-7651-01 4 13370206 13370206 T G RAB28 Missense_Mutation p.R214S 0.15 tolerated(0.07) benign(0.015) TCGA-IB-7651-01 4 13371502 13371502 A G RAB28 Intron 0.20 TCGA-IB-7651-01 4 134071191 134071191 G A PCDH10 5'UTR 0.20 TCGA-IB-7651-01 4 134071249 134071249 T G PCDH10 5'UTR 0.20 TCGA-IB-7651-01 4 134071914 134071914 G T PCDH10 Nonsense_Mutation p.G207* 0.21 TCGA-IB-7651-01 4 134072528 134072528 T G PCDH10 Missense_Mutation p.N411K 0.17 tolerated(0.07) probably_damaging(0.999) TCGA-IB-7651-01 4 134073073 134073073 C T PCDH10 Missense_Mutation p.S593L 0.20 tolerated(0.28) benign(0.254) TCGA-IB-7651-01 4 134073339 134073339 G A PCDH10 Missense_Mutation p.A682T 0.21 tolerated(0.59) benign(0.007) TCGA-IB-7651-01 4 134073466 134073466 C T PCDH10 Missense_Mutation p.S724L 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-IB-7651-01 4 134073477 134073477 A G PCDH10 Missense_Mutation p.I728V 0.21 tolerated(0.34) benign(0.004) TCGA-IB-7651-01 4 134084171 134084171 C A PCDH10 Missense_Mutation p.A946D 0.15 tolerated(0.06) probably_damaging(0.998) TCGA-IB-7651-01 4 1346849 1346849 G A UVSSA Silent p.T194T 0.20 TCGA-IB-7651-01 4 13597566 13597566 A C BOD1L1 Silent p.A2674A 0.09 TCGA-IB-7651-01 4 13600913 13600913 A G BOD1L1 Silent p.D2537D 0.19 TCGA-IB-7651-01 4 13601726 13601726 G A BOD1L1 Silent p.G2266G 0.21 TCGA-IB-7651-01 4 13601946 13601946 G A BOD1L1 Missense_Mutation p.P2193L 0.21 probably_damaging(1) TCGA-IB-7651-01 4 13602068 13602068 G A BOD1L1 Silent p.F2152F 0.14 TCGA-IB-7651-01 4 13604071 13604071 T G BOD1L1 Missense_Mutation p.S1485R 0.22 probably_damaging(0.92) TCGA-IB-7651-01 4 138442595 138442595 G A PCDH18 Missense_Mutation p.T999I 0.19 tolerated(0.23) benign(0.001) TCGA-IB-7651-01 4 138451342 138451342 C T PCDH18 Missense_Mutation p.R634Q 0.19 tolerated(0.23) benign(0.023) TCGA-IB-7651-01 4 138452051 138452051 T C PCDH18 Missense_Mutation p.K398E 0.19 tolerated(0.29) possibly_damaging(0.472) TCGA-IB-7651-01 4 138452324 138452324 T G PCDH18 Missense_Mutation p.T307P 0.17 tolerated(0.1) probably_damaging(0.984) TCGA-IB-7651-01 4 1388295 1388295 C A CRIPAK 5'UTR 0.09 TCGA-IB-7651-01 4 1389755 1389755 C T CRIPAK 3'UTR 0.09 TCGA-IB-7651-01 4 139163042 139163042 C A SLC7A11 Missense_Mutation p.G61V 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 140394313 140394313 C T RAB33B 3'UTR 0.19 TCGA-IB-7651-01 4 140599697 140599697 G A MGST2 Missense_Mutation p.S20N 0.19 tolerated(0.24) benign(0.009) TCGA-IB-7651-01 4 140640600 140640600 G A MAML3 Silent p.G1098G 0.14 TCGA-IB-7651-01 4 140811481 140811481 G T MAML3 Missense_Mutation p.S370Y 0.19 possibly_damaging(0.701) TCGA-IB-7651-01 4 141316994 141316994 C A CLGN Silent p.L376L 0.16 TCGA-IB-7651-01 4 141317309 141317309 G A CLGN Missense_Mutation p.A312V 0.21 tolerated(0.05) benign(0.005) TCGA-IB-7651-01 4 141461345 141461345 G A ELMOD2 Silent p.T141T 0.05 TCGA-IB-7651-01 4 141464612 141464612 C T ELMOD2 Missense_Mutation p.S203F 0.15 deleterious(0.01) possibly_damaging(0.452) TCGA-IB-7651-01 4 141543376 141543376 G A TBC1D9 Silent p.D1258D 0.16 TCGA-IB-7651-01 4 141543813 141543813 G T TBC1D9 Missense_Mutation p.L1113M 0.16 tolerated(0.24) benign(0.081) TCGA-IB-7651-01 4 141578910 141578910 G A TBC1D9 Silent p.L660L 0.19 TCGA-IB-7651-01 4 141590134 141590134 G A TBC1D9 Missense_Mutation p.R509W 0.09 deleterious(0) possibly_damaging(0.852) TCGA-IB-7651-01 4 141591969 141591969 G T TBC1D9 Missense_Mutation p.L391I 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-IB-7651-01 4 143003299 143003299 T C INPP4B Missense_Mutation p.K843E 0.14 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 4 144141476 144141476 C T USP38 Missense_Mutation p.A999V 0.17 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 4 144449155 144449155 G A SMARCA5 Silent p.R312R 0.19 TCGA-IB-7651-01 4 144940474 144940475 - A GYPB 5'UTR 0.19 TCGA-IB-7651-01 4 145032498 145032498 C T GYPA 3'UTR 0.20 TCGA-IB-7651-01 4 145567773 145567773 C T HHIP 5'UTR 0.22 TCGA-IB-7651-01 4 145573905 145573905 A G HHIP Missense_Mutation p.D143G 0.14 tolerated(0.06) benign(0.151) TCGA-IB-7651-01 4 145633201 145633201 G T HHIP Missense_Mutation p.Q467H 0.18 tolerated(0.13) benign(0.011) TCGA-IB-7651-01 4 145635402 145635402 C T HHIP Silent p.F483F 0.16 TCGA-IB-7651-01 4 146032209 146032209 G A ABCE1 Missense_Mutation p.A235T 0.18 deleterious(0.04) probably_damaging(0.911) TCGA-IB-7651-01 4 146044705 146044705 C T ABCE1 Silent p.R531R 0.18 TCGA-IB-7651-01 4 146058757 146058757 C T OTUD4 Missense_Mutation p.G992D 0.19 deleterious(0.04) possibly_damaging(0.474) TCGA-IB-7651-01 4 146601532 146601532 G A C4orf51 Silent p.K59K 0.18 TCGA-IB-7651-01 4 146824292 146824292 G A ZNF827 Missense_Mutation p.P40L 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 4 147561405 147561405 G T POU4F2 Missense_Mutation p.M225I 0.23 tolerated(0.21) benign(0.38) TCGA-IB-7651-01 4 147561477 147561477 C T POU4F2 Silent p.S249S 0.21 TCGA-IB-7651-01 4 147861051 147861051 G A TTC29 Intron 0.19 TCGA-IB-7651-01 4 148575447 148575447 T G PRMT10 Missense_Mutation p.H534P 0.19 deleterious(0.01) probably_damaging(0.987) TCGA-IB-7651-01 4 148786101 148786101 G A ARHGAP10 Silent p.V197V 0.21 TCGA-IB-7651-01 4 15060083 15060083 C T CPEB2 Nonsense_Mutation p.Q834* 0.15 TCGA-IB-7651-01 4 151504116 151504116 G A MAB21L2 5'UTR 0.19 TCGA-IB-7651-01 4 151504454 151504454 C T MAB21L2 Silent p.D91D 0.17 TCGA-IB-7651-01 4 151504591 151504591 C T MAB21L2 Missense_Mutation p.A137V 0.21 deleterious(0.01) possibly_damaging(0.515) TCGA-IB-7651-01 4 151511917 151511917 G A LRBA Silent p.G2058G 0.20 TCGA-IB-7651-01 4 151682954 151682954 C T LRBA Missense_Mutation p.E1876K 0.14 deleterious(0) possibly_damaging(0.64) TCGA-IB-7651-01 4 151749384 151749384 C T LRBA Missense_Mutation p.A1707T 0.15 tolerated_low_confidence(0.25) benign(0.001) TCGA-IB-7651-01 4 152069321 152069321 G T SH3D19 Missense_Mutation p.T332N 0.19 deleterious(0.01) benign(0.024) TCGA-IB-7651-01 4 152096417 152096417 C A SH3D19 Missense_Mutation p.K33N 0.18 deleterious(0) possibly_damaging(0.461) TCGA-IB-7651-01 4 153250829 153250829 C T FBXW7 Missense_Mutation p.G411S 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 4 153258977 153258977 A G FBXW7 Missense_Mutation p.F280L 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 4 153831445 153831445 T C ARFIP1 3'UTR 0.19 TCGA-IB-7651-01 4 153896509 153896509 G A FHDC1 Missense_Mutation p.G689D 0.17 tolerated(0.72) benign(0.005) TCGA-IB-7651-01 4 153897279 153897279 C T FHDC1 Missense_Mutation p.R946W 0.12 deleterious(0) probably_damaging(0.963) TCGA-IB-7651-01 4 153897796 153897796 C A FHDC1 Missense_Mutation p.A1118D 0.23 tolerated(0.27) benign(0.154) TCGA-IB-7651-01 4 154216605 154216605 C T TRIM2 Silent p.N309N 0.08 TCGA-IB-7651-01 4 154216729 154216729 G A TRIM2 Missense_Mutation p.V351I 0.23 tolerated(0.24) benign(0.106) TCGA-IB-7651-01 4 154216846 154216846 G A TRIM2 Missense_Mutation p.A390T 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-IB-7651-01 4 154216921 154216921 A G TRIM2 Missense_Mutation p.T415A 0.14 deleterious(0) probably_damaging(0.951) TCGA-IB-7651-01 4 154217082 154217082 G A TRIM2 Silent p.P468P 0.15 TCGA-IB-7651-01 4 154256138 154256138 C T TRIM2 3'UTR 0.17 TCGA-IB-7651-01 4 15437372 15437372 T G C1QTNF7 Missense_Mutation p.F9C 0.05 tolerated(0.18) possibly_damaging(0.724) TCGA-IB-7651-01 4 154525552 154525552 G T KIAA0922 Missense_Mutation p.D1130Y 0.09 deleterious(0) probably_damaging(0.94) TCGA-IB-7651-01 4 154553974 154553974 G A KIAA0922 Missense_Mutation p.A1438T 0.20 tolerated(0.21) benign(0.021) TCGA-IB-7651-01 4 154625213 154625213 C T TLR2 Missense_Mutation p.A385V 0.23 tolerated(0.06) possibly_damaging(0.861) TCGA-IB-7651-01 4 154702681 154702681 G A SFRP2 Silent p.I270I 0.19 TCGA-IB-7651-01 4 155156624 155156624 G A DCHS2 Silent p.N2605N 0.17 TCGA-IB-7651-01 4 155156635 155156635 C T DCHS2 Missense_Mutation p.D2602N 0.18 tolerated(0.13) benign(0.211) TCGA-IB-7651-01 4 155157313 155157313 T G DCHS2 Missense_Mutation p.T2376P 0.10 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 4 155157462 155157462 T G DCHS2 Missense_Mutation p.N2326T 0.18 deleterious(0) probably_damaging(0.979) TCGA-IB-7651-01 4 155219556 155219556 A C DCHS2 Nonsense_Mutation p.Y1515* 0.20 TCGA-IB-7651-01 4 155241935 155241935 C A DCHS2 Missense_Mutation p.G1084V 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 155253943 155253943 C T DCHS2 Silent p.T640T 0.21 TCGA-IB-7651-01 4 155254182 155254182 C T DCHS2 Missense_Mutation p.V561M 0.21 tolerated(0.11) benign(0.322) TCGA-IB-7651-01 4 155254359 155254359 C T DCHS2 Missense_Mutation p.A502T 0.08 deleterious(0.02) possibly_damaging(0.779) TCGA-IB-7651-01 4 155278477 155278477 C A DCHS2 Splice_Site p.X232_splice 0.19 TCGA-IB-7651-01 4 155298572 155298572 C T DCHS2 Missense_Mutation p.G87R 0.21 tolerated(0.06) probably_damaging(0.997) TCGA-IB-7651-01 4 15534870 15534870 G T CC2D2A Missense_Mutation p.K507N 0.12 deleterious(0) possibly_damaging(0.887) TCGA-IB-7651-01 4 155444 155444 C A ZNF718 RNA 0.21 TCGA-IB-7651-01 4 155465619 155465619 T C PLRG1 Missense_Mutation p.H191R 0.21 deleterious(0.04) probably_damaging(0.998) TCGA-IB-7651-01 4 155487037 155487037 G A FGB Silent p.P64P 0.13 TCGA-IB-7651-01 4 155487113 155487113 C A FGB Missense_Mutation p.P90T 0.16 deleterious(0) possibly_damaging(0.842) TCGA-IB-7651-01 4 155490440 155490440 G T FGB Missense_Mutation p.K313N 0.08 deleterious(0.02) probably_damaging(1) TCGA-IB-7651-01 4 155490772 155490772 C A FGB Missense_Mutation p.H355Q 0.18 tolerated(0.72) benign(0.005) TCGA-IB-7651-01 4 155505940 155505940 C T FGA Missense_Mutation p.G646D 0.12 deleterious(0.02) possibly_damaging(0.768) TCGA-IB-7651-01 4 155507398 155507398 G A FGA Missense_Mutation p.P395S 0.17 deleterious_low_confidence(0.04) benign(0.288) TCGA-IB-7651-01 4 155508756 155508756 C T FGA Missense_Mutation p.V140I 0.19 tolerated(0.85) benign(0.07) TCGA-IB-7651-01 4 155526150 155526150 T G FGG Missense_Mutation p.T400P 0.18 deleterious(0.03) benign(0.004) TCGA-IB-7651-01 4 155670387 155670387 G A LRAT 3'UTR 0.17 TCGA-IB-7651-01 4 155719270 155719270 G T RBM46 Missense_Mutation p.K153N 0.15 deleterious(0.01) possibly_damaging(0.678) TCGA-IB-7651-01 4 155748917 155748917 A G RBM46 Intron 0.19 TCGA-IB-7651-01 4 155748998 155748998 T A RBM46 Intron 0.19 TCGA-IB-7651-01 4 155749142 155749142 T C RBM46 Missense_Mutation p.S509P 0.19 deleterious_low_confidence(0.03) benign(0.137) TCGA-IB-7651-01 4 156135449 156135449 C T NPY2R Missense_Mutation p.P120S 0.14 tolerated(0.81) benign(0.001) TCGA-IB-7651-01 4 156136031 156136031 G A NPY2R Missense_Mutation p.A314T 0.14 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 156296174 156296174 C T MAP9 Splice_Site p.X26_splice 0.11 TCGA-IB-7651-01 4 156631699 156631699 C T GUCY1A3 Missense_Mutation p.P128S 0.16 tolerated(0.31) benign(0.035) TCGA-IB-7651-01 4 156717528 156717528 G T GUCY1B3 Splice_Site p.X282_splice 0.15 TCGA-IB-7651-01 4 156759990 156759990 G T ASIC5 Nonsense_Mutation p.Y347* 0.17 TCGA-IB-7651-01 4 156764950 156764950 G A ASIC5 Silent p.F248F 0.23 TCGA-IB-7651-01 4 156840997 156840997 A G TDO2 Missense_Mutation p.Y359C 0.15 deleterious(0) possibly_damaging(0.8) TCGA-IB-7651-01 4 156849530 156849530 C T CTSO Missense_Mutation p.V297I 0.17 tolerated(0.83) benign(0.013) TCGA-IB-7651-01 4 15733503 15733503 C A BST1 3'UTR 0.20 TCGA-IB-7651-01 4 15780058 15780058 C T CD38 Silent p.S7S 0.18 TCGA-IB-7651-01 4 157891977 157891977 T C PDGFC Missense_Mutation p.S27G 0.19 tolerated(0.34) benign(0.002) TCGA-IB-7651-01 4 15842113 15842113 C T CD38 Missense_Mutation p.S264L 0.15 tolerated(0.62) benign(0.009) TCGA-IB-7651-01 4 159091641 159091641 C A FAM198B Missense_Mutation p.S296I 0.17 deleterious(0) possibly_damaging(0.607) TCGA-IB-7651-01 4 15937605 15937605 A C FGFBP1 Silent p.T217T 0.17 TCGA-IB-7651-01 4 159566237 159566237 C T RXFP1 Missense_Mutation p.P431L 0.19 tolerated(0.08) benign(0.002) TCGA-IB-7651-01 4 159592872 159592872 C A C4orf46 Missense_Mutation p.A28S 0.20 tolerated_low_confidence(0.25) benign(0.063) TCGA-IB-7651-01 4 159593563 159593563 A G ETFDH 5'UTR 0.15 TCGA-IB-7651-01 4 159606330 159606330 G A ETFDH Missense_Mutation p.A189T 0.17 tolerated(0.12) benign(0.04) TCGA-IB-7651-01 4 159627858 159627858 T G ETFDH Missense_Mutation p.F516V 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 159627874 159627874 C A ETFDH Missense_Mutation p.S521Y 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 159636465 159636466 - T PPID Frame_Shift_Ins p.Y246Ifs*16 0.19 TCGA-IB-7651-01 4 15964245 15964245 C T FGFBP2 Missense_Mutation p.E170K 0.06 tolerated(1) benign(0.003) TCGA-IB-7651-01 4 159790058 159790058 T C FNIP2 Missense_Mutation p.V757A 0.17 tolerated(0.81) benign(0.001) TCGA-IB-7651-01 4 160251584 160251584 T G RAPGEF2 Silent p.L306L 0.17 TCGA-IB-7651-01 4 160262774 160262774 G A RAPGEF2 Missense_Mutation p.E704K 0.16 deleterious(0) possibly_damaging(0.488) TCGA-IB-7651-01 4 160277266 160277266 G A RAPGEF2 Missense_Mutation p.R1477H 0.19 tolerated_low_confidence(0.15) benign(0.001) TCGA-IB-7651-01 4 16192999 16192999 G T TAPT1 Silent p.I199I 0.23 TCGA-IB-7651-01 4 162307033 162307033 C T FSTL5 Missense_Mutation p.G804S 0.19 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 4 164246480 164246480 T A NPY1R Missense_Mutation p.N377I 0.14 tolerated_low_confidence(0.18) benign(0) TCGA-IB-7651-01 4 164246499 164246499 C T NPY1R Missense_Mutation p.A371T 0.13 tolerated(0.54) benign(0.003) TCGA-IB-7651-01 4 164434003 164434003 A C TMA16 Missense_Mutation p.N49T 0.21 tolerated(0.07) benign(0.124) TCGA-IB-7651-01 4 1657352 1657352 C T FAM53A Missense_Mutation p.A79T 0.23 tolerated(0.42) probably_damaging(0.922) TCGA-IB-7651-01 4 165962546 165962546 A G TRIM60 Missense_Mutation p.N441S 0.19 tolerated(0.91) benign(0.008) TCGA-IB-7651-01 4 166021946 166021946 T G TMEM192 Missense_Mutation p.K91N 0.17 tolerated(0.06) benign(0.209) TCGA-IB-7651-01 4 166254711 166254711 C A MSMO1 Missense_Mutation p.F63L 0.17 deleterious(0.03) benign(0.008) TCGA-IB-7651-01 4 167921568 167921568 G A SPOCK3 Silent p.R97R 0.15 TCGA-IB-7651-01 4 169194446 169194446 T G DDX60 Missense_Mutation p.D853A 0.20 deleterious(0) possibly_damaging(0.904) TCGA-IB-7651-01 4 169229212 169229212 C T DDX60 Missense_Mutation p.R70H 0.18 tolerated(0.24) benign(0.022) TCGA-IB-7651-01 4 169292909 169292909 G T DDX60L Silent p.I1594I 0.15 TCGA-IB-7651-01 4 169305771 169305771 T C DDX60L Missense_Mutation p.K1370E 0.21 tolerated(0.25) benign(0.013) TCGA-IB-7651-01 4 169312748 169312748 G A DDX60L Silent p.C1286C 0.14 TCGA-IB-7651-01 4 169327130 169327130 T G DDX60L Missense_Mutation p.N1062H 0.20 tolerated(0.22) benign(0.015) TCGA-IB-7651-01 4 169327215 169327215 C T DDX60L Silent p.E1033E 0.15 TCGA-IB-7651-01 4 169343747 169343747 G A DDX60L Silent p.G724G 0.19 TCGA-IB-7651-01 4 170037775 170037775 G A SH3RF1 Missense_Mutation p.A595V 0.16 tolerated(0.12) benign(0.004) TCGA-IB-7651-01 4 170051308 170051308 C T SH3RF1 Splice_Site p.X357_splice 0.17 TCGA-IB-7651-01 4 170671837 170671837 G A C4orf27 Missense_Mutation p.P83L 0.14 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 4 170912876 170912876 G A MFAP3L Missense_Mutation p.R295W 0.19 deleterious(0) probably_damaging(0.972) TCGA-IB-7651-01 4 170926947 170926947 C T MFAP3L Missense_Mutation p.A28T 0.07 deleterious(0) possibly_damaging(0.77) TCGA-IB-7651-01 4 174235199 174235199 G A GALNT7 Missense_Mutation p.D494N 0.17 tolerated(0.1) possibly_damaging(0.751) TCGA-IB-7651-01 4 174254339 174254339 C T HMGB2 Silent p.K59K 0.09 TCGA-IB-7651-01 4 174450017 174450017 G A HAND2 Missense_Mutation p.R142C 0.04 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 4 17510920 17510920 C T QDPR Missense_Mutation p.D58N 0.17 tolerated(0.26) possibly_damaging(0.536) TCGA-IB-7651-01 4 175231080 175231080 C T CEP44 Missense_Mutation p.S253L 0.16 tolerated(0.71) benign(0) TCGA-IB-7651-01 4 175564761 175564761 G T GLRA3 3'UTR 0.22 TCGA-IB-7651-01 4 175564991 175564991 G A GLRA3 Silent p.Y447Y 0.16 TCGA-IB-7651-01 4 175636706 175636706 A C GLRA3 Silent p.L169L 0.22 TCGA-IB-7651-01 4 17583965 17583965 G A LAP3 Missense_Mutation p.E110K 0.15 tolerated(0.52) benign(0.002) TCGA-IB-7651-01 4 175898652 175898652 G T ADAM29 Missense_Mutation p.G659V 0.09 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 4 175899058 175899058 G T ADAM29 Missense_Mutation p.Q794H 0.16 deleterious_low_confidence(0.05) unknown(0) TCGA-IB-7651-01 4 176556048 176556048 A C GPM6A 3'UTR 0.15 TCGA-IB-7651-01 4 176573004 176573004 G T GPM6A Nonsense_Mutation p.C174* 0.14 TCGA-IB-7651-01 4 177069319 177069319 G A WDR17 Missense_Mutation p.C601Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 4 177073110 177073110 C A WDR17 Missense_Mutation p.L842I 0.16 tolerated(0.08) probably_damaging(0.992) TCGA-IB-7651-01 4 177138127 177138127 G A ASB5 Missense_Mutation p.T235I 0.18 deleterious(0) possibly_damaging(0.826) TCGA-IB-7651-01 4 177604962 177604962 G A VEGFC 3'UTR 0.17 TCGA-IB-7651-01 4 178231023 178231023 C T NEIL3 5'UTR 0.15 TCGA-IB-7651-01 4 178260982 178260982 A G NEIL3 Missense_Mutation p.I225V 0.22 tolerated(0.16) benign(0.013) TCGA-IB-7651-01 4 178262667 178262667 A C NEIL3 Missense_Mutation p.K247T 0.23 deleterious(0.01) probably_damaging(0.992) TCGA-IB-7651-01 4 178352895 178352896 - T AGA Frame_Shift_Ins p.N336Kfs*5 0.17 TCGA-IB-7651-01 4 178358577 178358577 G A AGA Missense_Mutation p.R202C 0.16 tolerated(0.18) benign(0.013) TCGA-IB-7651-01 4 178360778 178360778 G A AGA Missense_Mutation p.R116W 0.16 deleterious(0.02) probably_damaging(0.98) TCGA-IB-7651-01 4 17844978 17844978 G A NCAPG Missense_Mutation p.R993Q 0.19 deleterious(0.02) probably_damaging(0.992) TCGA-IB-7651-01 4 17910775 17910775 C T LCORL Silent p.E208E 0.18 TCGA-IB-7651-01 4 17963615 17963615 G A LCORL Missense_Mutation p.T114I 0.16 deleterious(0.03) probably_damaging(0.991) TCGA-IB-7651-01 4 1805440 1805440 G A FGFR3 Intron 0.17 TCGA-IB-7651-01 4 1805556 1805556 G A FGFR3 Intron 0.16 TCGA-IB-7651-01 4 1807392 1807392 G A FGFR3 Silent p.Q549Q 0.18 TCGA-IB-7651-01 4 1808341 1808341 T C FGFR3 Missense_Mutation p.V702A 0.22 deleterious(0.01) benign(0.367) TCGA-IB-7651-01 4 1824770 1824770 G A LETM1 Missense_Mutation p.A474V 0.21 tolerated(0.2) benign(0.048) TCGA-IB-7651-01 4 183594220 183594220 C T TENM3 Nonsense_Mutation p.R392* 0.14 TCGA-IB-7651-01 4 183659682 183659682 C T TENM3 Silent p.L1122L 0.09 TCGA-IB-7651-01 4 183675541 183675541 C T TENM3 Missense_Mutation p.R1341C 0.11 deleterious(0) benign(0.095) TCGA-IB-7651-01 4 183675695 183675695 C A TENM3 Missense_Mutation p.P1392H 0.12 tolerated(0.56) benign(0) TCGA-IB-7651-01 4 183676061 183676061 C T TENM3 Missense_Mutation p.A1514V 0.10 tolerated(0.2) benign(0.011) TCGA-IB-7651-01 4 183713625 183713625 C A TENM3 Missense_Mutation p.L1934I 0.25 tolerated(0.43) possibly_damaging(0.636) TCGA-IB-7651-01 4 183721257 183721257 C T TENM3 Missense_Mutation p.A2618V 0.23 tolerated(0.34) possibly_damaging(0.75) TCGA-IB-7651-01 4 184186218 184186218 C T WWC2 Missense_Mutation p.S666F 0.07 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 4 184192281 184192281 T C WWC2 Missense_Mutation p.F817L 0.19 tolerated(0.67) benign(0.071) TCGA-IB-7651-01 4 184367459 184367459 C T CDKN2AIP Nonsense_Mutation p.R208* 0.06 TCGA-IB-7651-01 4 184368400 184368400 A T CDKN2AIP Missense_Mutation p.E521D 0.14 tolerated(0.07) benign(0.066) TCGA-IB-7651-01 4 184431723 184431723 G T ING2 Missense_Mutation p.R154M 0.18 deleterious(0) possibly_damaging(0.87) TCGA-IB-7651-01 4 184614276 184614276 G T TRAPPC11 Missense_Mutation p.S738I 0.22 deleterious(0.02) possibly_damaging(0.727) TCGA-IB-7651-01 4 184922582 184922582 C T STOX2 Missense_Mutation p.P91S 0.10 tolerated(0.58) benign(0.097) TCGA-IB-7651-01 4 184930594 184930594 C T STOX2 Silent p.C201C 0.08 TCGA-IB-7651-01 4 184931469 184931469 C T STOX2 Missense_Mutation p.S493L 0.22 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 4 184931489 184931489 C T STOX2 Missense_Mutation p.P500S 0.11 tolerated(0.09) benign(0.177) TCGA-IB-7651-01 4 185074810 185074810 G T ENPP6 Silent p.G106G 0.05 TCGA-IB-7651-01 4 185606792 185606792 C T PRIMPOL Missense_Mutation p.R417W 0.20 probably_damaging(1) TCGA-IB-7651-01 4 185678324 185678324 A C ACSL1 Nonsense_Mutation p.Y684* 0.04 TCGA-IB-7651-01 4 185719738 185719738 G T ACSL1 Intron 0.23 TCGA-IB-7651-01 4 186067969 186067969 C T SLC25A4 Silent p.A247A 0.10 TCGA-IB-7651-01 4 186084022 186084022 G A KIAA1430 Missense_Mutation p.A510V 0.13 tolerated(1) benign(0.002) TCGA-IB-7651-01 4 186085198 186085198 G T KIAA1430 Missense_Mutation p.Q486K 0.11 deleterious(0.05) possibly_damaging(0.524) TCGA-IB-7651-01 4 186111392 186111392 G A KIAA1430 Missense_Mutation p.S320F 0.27 tolerated(0.43) benign(0.097) TCGA-IB-7651-01 4 186111567 186111567 C A KIAA1430 Missense_Mutation p.D262Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 4 186278860 186278860 G A SNX25 Missense_Mutation p.V710I 0.11 deleterious(0) probably_damaging(0.978) TCGA-IB-7651-01 4 186329507 186329507 C T UFSP2 Missense_Mutation p.R305Q 0.09 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 186329545 186329545 C A UFSP2 Missense_Mutation p.Q292H 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 186339802 186339802 T G UFSP2 Missense_Mutation p.N69H 0.09 tolerated(0.51) benign(0.002) TCGA-IB-7651-01 4 186380209 186380210 - T CCDC110 Frame_Shift_Ins p.I511Nfs*3 0.10 TCGA-IB-7651-01 4 186423589 186423589 G A PDLIM3 Silent p.F318F 0.10 TCGA-IB-7651-01 4 186423604 186423604 C T PDLIM3 Silent p.R313R 0.17 TCGA-IB-7651-01 4 186425686 186425686 C T PDLIM3 Missense_Mutation p.G283D 0.15 deleterious(0.02) benign(0.04) TCGA-IB-7651-01 4 186456534 186456534 C A PDLIM3 Missense_Mutation p.G19W 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 4 186545525 186545525 G A SORBS2 Missense_Mutation p.P449L 0.09 tolerated(0.1) benign(0.075) TCGA-IB-7651-01 4 186997978 186997978 G A TLR3 Missense_Mutation p.A69T 0.21 tolerated(0.32) benign(0.029) TCGA-IB-7651-01 4 187000170 187000170 G A TLR3 Silent p.S206S 0.19 TCGA-IB-7651-01 4 187004176 187004176 G T TLR3 Nonsense_Mutation p.E446* 0.15 TCGA-IB-7651-01 4 187074871 187074871 C T FAM149A Silent p.S53S 0.20 TCGA-IB-7651-01 4 187077278 187077278 G A FAM149A Missense_Mutation p.V170I 0.12 tolerated(0.7) benign(0.05) TCGA-IB-7651-01 4 187078767 187078767 C T FAM149A Missense_Mutation p.P208L 0.14 tolerated(0.1) benign(0.014) TCGA-IB-7651-01 4 187084635 187084635 G A FAM149A Silent p.P297P 0.11 TCGA-IB-7651-01 4 187088339 187088339 C T FAM149A Missense_Mutation p.S433L 0.22 tolerated(0.1) benign(0.001) TCGA-IB-7651-01 4 187130376 187130376 G A CYP4V2 Missense_Mutation p.R452H 0.09 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 187178451 187178451 C T KLKB1 Nonsense_Mutation p.Q553* 0.19 TCGA-IB-7651-01 4 187454932 187454932 C T MTNR1A Missense_Mutation p.D322N 0.21 tolerated(0.12) benign(0.023) TCGA-IB-7651-01 4 187534419 187534419 C A FAT1 Nonsense_Mutation p.G3103* 0.19 TCGA-IB-7651-01 4 187535439 187535439 G T FAT1 Silent p.I3045I 0.21 TCGA-IB-7651-01 4 187538356 187538356 C A FAT1 Splice_Site p.X2960_splice 0.13 TCGA-IB-7651-01 4 187539140 187539140 C T FAT1 Missense_Mutation p.G2867D 0.20 probably_damaging(1) TCGA-IB-7651-01 4 187540331 187540331 C A FAT1 Missense_Mutation p.G2470V 0.07 probably_damaging(1) TCGA-IB-7651-01 4 187540695 187540695 C A FAT1 Missense_Mutation p.D2349Y 0.07 probably_damaging(1) TCGA-IB-7651-01 4 187628088 187628088 C T FAT1 Missense_Mutation p.S965N 0.09 possibly_damaging(0.697) TCGA-IB-7651-01 4 187630410 187630410 C T FAT1 Missense_Mutation p.R191Q 0.12 possibly_damaging(0.804) TCGA-IB-7651-01 4 188924725 188924725 G A ZFP42 Missense_Mutation p.R255H 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 4 189012679 189012679 C T TRIML2 Missense_Mutation p.E338K 0.21 tolerated(0.26) benign(0.082) TCGA-IB-7651-01 4 189018475 189018475 C T TRIML2 Intron 0.15 TCGA-IB-7651-01 4 189020151 189020151 C A TRIML2 Intron 0.17 TCGA-IB-7651-01 4 189067986 189067986 G A TRIML1 Silent p.T289T 0.10 TCGA-IB-7651-01 4 1918684 1918684 G A WHSC1 Missense_Mutation p.A283T 0.21 tolerated(0.46) benign(0.007) TCGA-IB-7651-01 4 1985098 1985098 G A NELFA Missense_Mutation p.T523M 0.04 deleterious(0) probably_damaging(0.968) TCGA-IB-7651-01 4 1987506 1987506 C T NELFA Silent p.T318T 0.15 TCGA-IB-7651-01 4 20544182 20544182 G T SLIT2 Missense_Mutation p.V737F 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 4 20550138 20550138 G A SLIT2 Silent p.T791T 0.19 TCGA-IB-7651-01 4 20568888 20568888 C A SLIT2 Missense_Mutation p.P910H 0.18 deleterious(0) possibly_damaging(0.868) TCGA-IB-7651-01 4 20599956 20599956 C A SLIT2 Silent p.L1210L 0.20 TCGA-IB-7651-01 4 2062757 2062757 C T NAT8L Silent p.L137L 0.23 TCGA-IB-7651-01 4 206515 206515 C T ZNF876P RNA 0.13 TCGA-IB-7651-01 4 2065708 2065708 G A NAT8L Missense_Mutation p.A255T 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 20706376 20706376 A C PACRGL Missense_Mutation p.E49A 0.17 tolerated(0.11) benign(0.097) TCGA-IB-7651-01 4 20751322 20751322 G A KCNIP4 Missense_Mutation p.A131V 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-IB-7651-01 4 2130966 2130966 G A POLN Missense_Mutation p.L603F 0.16 tolerated(0.1) benign(0.111) TCGA-IB-7651-01 4 21950299 21950299 G A KCNIP4 5'UTR 0.29 TCGA-IB-7651-01 4 22390256 22390256 C A GPR125 Missense_Mutation p.G1013V 0.17 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 4 22390383 22390383 T G GPR125 Missense_Mutation p.N971H 0.19 tolerated(0.56) benign(0.006) TCGA-IB-7651-01 4 22390718 22390718 C T GPR125 Missense_Mutation p.A906T 0.09 tolerated(0.24) benign(0.141) TCGA-IB-7651-01 4 22414965 22414965 C T GPR125 Missense_Mutation p.R691H 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 4 2242216 2242216 C T HAUS3 Missense_Mutation p.G153E 0.13 tolerated(0.92) benign(0.004) TCGA-IB-7651-01 4 2252274 2252274 C T MXD4 Silent p.S209S 0.11 TCGA-IB-7651-01 4 2263663 2263663 G A MXD4 Silent p.Y15Y 0.19 TCGA-IB-7651-01 4 22737808 22737808 C T GBA3 Missense_Mutation p.T88M 0.19 deleterious(0.04) probably_damaging(1) TCGA-IB-7651-01 4 22749357 22749357 C A GBA3 Missense_Mutation p.A242D 0.18 deleterious(0) probably_damaging(0.978) TCGA-IB-7651-01 4 23815518 23815518 A T PPARGC1A Missense_Mutation p.S530T 0.17 tolerated(0.57) benign(0.028) TCGA-IB-7651-01 4 23833186 23833186 C T PPARGC1A Silent p.P141P 0.19 TCGA-IB-7651-01 4 24538792 24538792 T C DHX15 Silent p.P597P 0.21 TCGA-IB-7651-01 4 24543646 24543646 C T DHX15 Splice_Site p.X446_splice 0.16 TCGA-IB-7651-01 4 24578221 24578221 C T DHX15 Missense_Mutation p.R51Q 0.22 tolerated_low_confidence(0.12) benign(0.002) TCGA-IB-7651-01 4 248351 248351 C T ZNF876P RNA 0.22 TCGA-IB-7651-01 4 248507 248507 C T ZNF876P RNA 0.19 TCGA-IB-7651-01 4 25125508 25125508 G A SEPSECS 3'UTR 0.14 TCGA-IB-7651-01 4 25125548 25125548 G A SEPSECS 3'UTR 0.18 TCGA-IB-7651-01 4 25278876 25278876 A G PI4K2B 3'UTR 0.17 TCGA-IB-7651-01 4 25370758 25370758 A G ZCCHC4 Missense_Mutation p.E505G 0.23 tolerated_low_confidence(0.07) possibly_damaging(0.727) TCGA-IB-7651-01 4 25390499 25390499 C T ANAPC4 Silent p.D170D 0.13 TCGA-IB-7651-01 4 25393972 25393972 C A ANAPC4 Missense_Mutation p.L240M 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-IB-7651-01 4 25418146 25418146 C A ANAPC4 Silent p.V667V 0.17 TCGA-IB-7651-01 4 25671453 25671453 C T SLC34A2 Missense_Mutation p.L274F 0.18 tolerated(0.06) benign(0.053) TCGA-IB-7651-01 4 25672428 25672428 G A SLC34A2 Silent p.K300K 0.13 TCGA-IB-7651-01 4 25677760 25677760 G A SLC34A2 Missense_Mutation p.A488T 0.15 deleterious(0) probably_damaging(0.918) TCGA-IB-7651-01 4 25678117 25678117 G A SLC34A2 Missense_Mutation p.V607I 0.19 tolerated(1) benign(0.002) TCGA-IB-7651-01 4 25678182 25678182 G A SLC34A2 Silent p.A628A 0.17 TCGA-IB-7651-01 4 25806207 25806207 C A SEL1L3 Missense_Mutation p.V578F 0.15 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 4 25831741 25831741 C T SEL1L3 Missense_Mutation p.S379N 0.19 tolerated(0.33) benign(0.003) TCGA-IB-7651-01 4 26417218 26417218 G T RBPJ Nonsense_Mutation p.G106* 0.17 TCGA-IB-7651-01 4 26430396 26430396 T G RBPJ Missense_Mutation p.S281A 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 26483316 26483316 C A CCKAR Missense_Mutation p.A411S 0.11 deleterious(0.04) possibly_damaging(0.692) TCGA-IB-7651-01 4 26483762 26483762 T G CCKAR Missense_Mutation p.K262T 0.19 tolerated(0.47) benign(0.063) TCGA-IB-7651-01 4 26491823 26491823 C T CCKAR Missense_Mutation p.E23K 0.21 tolerated(0.44) benign(0.01) TCGA-IB-7651-01 4 265610 265610 A G ZNF732 Missense_Mutation p.S346P 0.18 tolerated(0.12) possibly_damaging(0.592) TCGA-IB-7651-01 4 266376 266376 C T ZNF732 Silent p.G90G 0.09 TCGA-IB-7651-01 4 26638889 26638889 T C TBC1D19 Silent p.S117S 0.18 TCGA-IB-7651-01 4 27024677 27024677 C T STIM2 3'UTR 0.22 TCGA-IB-7651-01 4 2747209 2747209 C A TNIP2 Missense_Mutation p.Q207H 0.16 deleterious(0) possibly_damaging(0.606) TCGA-IB-7651-01 4 2964855 2964855 C T NOP14 Silent p.R64R 0.20 TCGA-IB-7651-01 4 30723931 30723931 T C PCDH7 Missense_Mutation p.V296A 0.19 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 4 30725148 30725148 C T PCDH7 Missense_Mutation p.R702W 0.16 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 4 3133503 3133503 G A HTT Splice_Site p.X746_splice 0.19 TCGA-IB-7651-01 4 3142376 3142376 A C HTT Missense_Mutation p.I980L 0.17 benign(0.003) TCGA-IB-7651-01 4 3144596 3144596 A G HTT Missense_Mutation p.T1017A 0.17 benign(0.403) TCGA-IB-7651-01 4 3146887 3146887 C T HTT Silent p.C1025C 0.09 TCGA-IB-7651-01 4 3240630 3240630 C T HTT Missense_Mutation p.A3047V 0.23 benign(0.044) TCGA-IB-7651-01 4 3317870 3317870 G A RGS12 5'UTR 0.19 TCGA-IB-7651-01 4 3317942 3317942 G A RGS12 Silent p.P15P 0.19 TCGA-IB-7651-01 4 3318639 3318639 G A RGS12 Missense_Mutation p.E248K 0.05 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 4 3318679 3318679 G A RGS12 Missense_Mutation p.R261H 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 4 3430202 3430202 G T RGS12 Intron 0.17 TCGA-IB-7651-01 4 3432402 3432402 C A RGS12 Silent p.A1278A 0.17 TCGA-IB-7651-01 4 3441290 3441290 C A RGS12 Missense_Mutation p.A1408D 0.16 tolerated_low_confidence(0.09) benign(0.051) TCGA-IB-7651-01 4 3446679 3446679 C T HGFAC Silent p.G325G 0.21 TCGA-IB-7651-01 4 3495172 3495172 G T DOK7 Missense_Mutation p.A487S 0.20 tolerated_low_confidence(0.08) probably_damaging(0.996) TCGA-IB-7651-01 4 36118684 36118684 C T ARAP2 Missense_Mutation p.R1346Q 0.15 tolerated(0.07) benign(0.099) TCGA-IB-7651-01 4 367133 367133 C T ZNF141 Nonsense_Mutation p.R303* 0.15 TCGA-IB-7651-01 4 367319 367319 C T ZNF141 Missense_Mutation p.R365W 0.23 deleterious(0) possibly_damaging(0.632) TCGA-IB-7651-01 4 367647 367647 C A ZNF141 Missense_Mutation p.T474N 0.18 deleterious(0) possibly_damaging(0.83) TCGA-IB-7651-01 4 37592370 37592370 G A C4orf19 Silent p.T231T 0.17 TCGA-IB-7651-01 4 3768871 3768871 G A ADRA2C Missense_Mutation p.A180T 0.20 deleterious(0.01) possibly_damaging(0.824) TCGA-IB-7651-01 4 3768908 3768908 G A ADRA2C Missense_Mutation p.R192H 0.22 deleterious(0.04) benign(0.039) TCGA-IB-7651-01 4 38798201 38798201 G A TLR1 Missense_Mutation p.A751V 0.18 deleterious(0.03) benign(0.016) TCGA-IB-7651-01 4 38800334 38800334 G T TLR1 Missense_Mutation p.P40H 0.19 deleterious(0.01) probably_damaging(0.936) TCGA-IB-7651-01 4 38800423 38800423 G T TLR1 Silent p.I10I 0.08 TCGA-IB-7651-01 4 38829804 38829804 C A TLR6 Missense_Mutation p.V431L 0.18 tolerated(0.92) benign(0.002) TCGA-IB-7651-01 4 39191347 39191347 T G WDR19 Missense_Mutation p.I79S 0.16 deleterious(0) possibly_damaging(0.867) TCGA-IB-7651-01 4 39280277 39280277 C T WDR19 3'UTR 0.19 TCGA-IB-7651-01 4 39291557 39291557 C A RFC1 Missense_Mutation p.D1092Y 0.19 deleterious(0) benign(0.04) TCGA-IB-7651-01 4 39310294 39310294 C T RFC1 Missense_Mutation p.R616Q 0.18 tolerated(0.72) benign(0.002) TCGA-IB-7651-01 4 39322915 39322915 G A RFC1 Missense_Mutation p.P267L 0.14 tolerated(0.07) benign(0.003) TCGA-IB-7651-01 4 39448080 39448080 T G KLB Missense_Mutation p.D578E 0.18 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 4 39482215 39482215 C T LIAS 3'Flank 0.21 TCGA-IB-7651-01 4 39523021 39523021 T C UGDH Missense_Mutation p.N38D 0.19 deleterious(0.04) benign(0.072) TCGA-IB-7651-01 4 39780107 39780107 A G UBE2K 3'UTR 0.23 TCGA-IB-7651-01 4 39839590 39839590 G A PDS5A Missense_Mutation p.A1299V 0.21 deleterious_low_confidence(0.02) benign(0.044) TCGA-IB-7651-01 4 39910118 39910118 C T PDS5A Missense_Mutation p.R377H 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 40103869 40103869 A G N4BP2 Missense_Mutation p.D135G 0.19 deleterious(0.01) possibly_damaging(0.556) TCGA-IB-7651-01 4 40104536 40104536 G A N4BP2 Silent p.P357P 0.19 TCGA-IB-7651-01 4 40122325 40122325 G T N4BP2 Missense_Mutation p.S865I 0.16 deleterious(0.05) possibly_damaging(0.83) TCGA-IB-7651-01 4 40122738 40122738 C T N4BP2 Missense_Mutation p.P1003S 0.08 tolerated(0.82) benign(0.002) TCGA-IB-7651-01 4 40138628 40138628 G A N4BP2 Missense_Mutation p.V1571I 0.15 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 4 40154517 40154517 G T N4BP2 Missense_Mutation p.S1754I 0.16 deleterious(0) probably_damaging(0.962) TCGA-IB-7651-01 4 40245060 40245060 C A RHOH Silent p.T18T 0.17 TCGA-IB-7651-01 4 40245403 40245403 G T RHOH Missense_Mutation p.A133S 0.16 tolerated(0.42) benign(0.005) TCGA-IB-7651-01 4 40337477 40337477 G T CHRNA9 5'UTR 0.20 TCGA-IB-7651-01 4 40351187 40351187 C T CHRNA9 Silent p.G218G 0.18 TCGA-IB-7651-01 4 40351281 40351281 C T CHRNA9 Missense_Mutation p.L250F 0.17 tolerated(0.06) probably_damaging(0.965) TCGA-IB-7651-01 4 40440179 40440179 G A RBM47 Silent p.T244T 0.18 TCGA-IB-7651-01 4 40440380 40440380 G A RBM47 Silent p.G177G 0.05 TCGA-IB-7651-01 4 40440520 40440520 G T RBM47 Missense_Mutation p.L131I 0.07 deleterious(0.04) benign(0.106) TCGA-IB-7651-01 4 40440526 40440526 G A RBM47 Missense_Mutation p.R129C 0.17 deleterious(0) probably_damaging(0.918) TCGA-IB-7651-01 4 40776811 40776811 G T NSUN7 Missense_Mutation p.K223N 0.07 deleterious(0) benign(0.365) TCGA-IB-7651-01 4 40776916 40776916 A G NSUN7 Silent p.K258K 0.19 TCGA-IB-7651-01 4 40832536 40832536 G A APBB2 Nonsense_Mutation p.R530* 0.14 TCGA-IB-7651-01 4 41270161 41270161 G T UCHL1 3'UTR 0.22 TCGA-IB-7651-01 4 41749444 41749444 G A PHOX2B Silent p.F117F 0.14 TCGA-IB-7651-01 4 42403028 42403028 G T SHISA3 Splice_Site p.X93_splice 0.18 TCGA-IB-7651-01 4 42403101 42403101 C T SHISA3 Missense_Mutation p.A117V 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 4 42416721 42416721 G A ATP8A1 Missense_Mutation p.A1107V 0.19 tolerated(0.18) probably_damaging(0.972) TCGA-IB-7651-01 4 4242094 4242094 C T TMEM128 Missense_Mutation p.A94T 0.17 tolerated(0.21) benign(0.01) TCGA-IB-7651-01 4 42577717 42577717 C A ATP8A1 Splice_Site p.X377_splice 0.15 TCGA-IB-7651-01 4 42581869 42581869 G A ATP8A1 Nonsense_Mutation p.R321* 0.20 TCGA-IB-7651-01 4 42626570 42626570 C A ATP8A1 Nonsense_Mutation p.E116* 0.10 TCGA-IB-7651-01 4 42895651 42895651 T C GRXCR1 Missense_Mutation p.L123S 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 4 4421790 4421790 A G STX18 Silent p.L327L 0.11 TCGA-IB-7651-01 4 44449580 44449580 G A KCTD8 Nonsense_Mutation p.R321* 0.19 TCGA-IB-7651-01 4 44691943 44691943 C T GUF1 Missense_Mutation p.T429I 0.15 deleterious(0.04) benign(0.049) TCGA-IB-7651-01 4 44700741 44700741 C T GUF1 3'UTR 0.16 TCGA-IB-7651-01 4 46060235 46060235 C T GABRG1 Silent p.L305L 0.16 TCGA-IB-7651-01 4 46252622 46252622 C A GABRA2 Splice_Site p.X354_splice 0.16 TCGA-IB-7651-01 4 46390842 46390842 C T GABRA2 Intron 0.13 TCGA-IB-7651-01 4 46930511 46930511 G A GABRA4 Nonsense_Mutation p.R466* 0.09 TCGA-IB-7651-01 4 46930552 46930552 G A GABRA4 Missense_Mutation p.P452L 0.21 deleterious_low_confidence(0.01) benign(0.012) TCGA-IB-7651-01 4 46930768 46930768 G A GABRA4 Missense_Mutation p.T380I 0.22 tolerated(0.24) benign(0.004) TCGA-IB-7651-01 4 46979547 46979547 G A GABRA4 Missense_Mutation p.T125M 0.19 deleterious(0) possibly_damaging(0.893) TCGA-IB-7651-01 4 46995361 46995361 C T GABRA4 Silent p.A27A 0.15 TCGA-IB-7651-01 4 47163380 47163380 C T GABRB1 Missense_Mutation p.P119S 0.18 deleterious(0.04) probably_damaging(0.994) TCGA-IB-7651-01 4 47427969 47427969 C T GABRB1 Silent p.S453S 0.14 TCGA-IB-7651-01 4 47559715 47559715 A C ATP10D Missense_Mutation p.K620T 0.20 tolerated(0.16) benign(0.191) TCGA-IB-7651-01 4 47560058 47560058 G A ATP10D Silent p.V734V 0.17 TCGA-IB-7651-01 4 47563037 47563037 G A ATP10D Silent p.R871R 0.18 TCGA-IB-7651-01 4 47589067 47589067 G A ATP10D Missense_Mutation p.S1262N 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 4 47645169 47645169 C A CORIN Missense_Mutation p.D688Y 0.15 deleterious(0) probably_damaging(0.981) TCGA-IB-7651-01 4 47788906 47788906 C T CORIN Missense_Mutation p.S82N 0.19 tolerated(0.06) benign(0.334) TCGA-IB-7651-01 4 48147173 48147173 C T TEC Missense_Mutation p.V465I 0.18 tolerated(0.23) benign(0.001) TCGA-IB-7651-01 4 48151572 48151572 A G TEC Splice_Site p.X336_splice 0.16 TCGA-IB-7651-01 4 48486146 48486146 G A SLC10A4 Missense_Mutation p.V190I 0.19 tolerated(0.07) possibly_damaging(0.718) TCGA-IB-7651-01 4 48496233 48496233 G T ZAR1 Missense_Mutation p.S416I 0.10 deleterious(0) possibly_damaging(0.897) TCGA-IB-7651-01 4 48501642 48501642 G A FRYL Silent p.L2947L 0.22 TCGA-IB-7651-01 4 48502115 48502115 A C FRYL Missense_Mutation p.I2905M 0.17 deleterious(0.03) possibly_damaging(0.655) TCGA-IB-7651-01 4 48503735 48503735 G A FRYL Nonsense_Mutation p.R2833* 0.18 TCGA-IB-7651-01 4 48512134 48512134 A T FRYL Missense_Mutation p.V2779D 0.17 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 4 48578084 48578084 G A FRYL Missense_Mutation p.A895V 0.16 deleterious(0.02) probably_damaging(0.959) TCGA-IB-7651-01 4 48604058 48604058 C A FRYL Missense_Mutation p.Q338H 0.16 tolerated(0.06) possibly_damaging(0.617) TCGA-IB-7651-01 4 4864471 4864471 G A MSX1 Silent p.T171T 0.17 TCGA-IB-7651-01 4 48844691 48844691 G T OCIAD1 Nonsense_Mutation p.G60* 0.11 TCGA-IB-7651-01 4 48850458 48850458 T G OCIAD1 Missense_Mutation p.L79R 0.26 deleterious(0) probably_damaging(0.968) TCGA-IB-7651-01 4 48994109 48994109 T C CWH43 Splice_Site p.X171_splice 0.17 TCGA-IB-7651-01 4 49000506 49000506 G A CWH43 Missense_Mutation p.G248E 0.15 deleterious(0) probably_damaging(0.945) TCGA-IB-7651-01 4 49034600 49034600 G A CWH43 Missense_Mutation p.R509K 0.16 tolerated(0.61) benign(0.178) TCGA-IB-7651-01 4 5016925 5016925 C A CYTL1 Nonsense_Mutation p.E122* 0.18 TCGA-IB-7651-01 4 524230 524230 T G PIGG Missense_Mutation p.I756S 0.15 deleterious(0) benign(0.081) TCGA-IB-7651-01 4 52740484 52740484 C T DCUN1D4 Missense_Mutation p.P62S 0.17 deleterious(0.01) possibly_damaging(0.885) TCGA-IB-7651-01 4 52740552 52740552 G A DCUN1D4 Splice_Site p.X84_splice 0.18 TCGA-IB-7651-01 4 527709 527709 T C PIGG Missense_Mutation p.Y892H 0.15 deleterious(0) probably_damaging(0.966) TCGA-IB-7651-01 4 52861802 52861802 C A LRRC66 Missense_Mutation p.Q462H 0.19 deleterious(0.02) benign(0.187) TCGA-IB-7651-01 4 52862271 52862271 G A LRRC66 Missense_Mutation p.P306L 0.23 tolerated(0.07) possibly_damaging(0.542) TCGA-IB-7651-01 4 52945942 52945942 G T SPATA18 Missense_Mutation p.K404N 0.18 deleterious(0) probably_damaging(0.978) TCGA-IB-7651-01 4 52945959 52945959 T C SPATA18 Missense_Mutation p.V410A 0.10 deleterious(0) benign(0.016) TCGA-IB-7651-01 4 53468125 53468125 C T USP46 Missense_Mutation p.R273H 0.22 deleterious(0) possibly_damaging(0.819) TCGA-IB-7651-01 4 53731794 53731794 T C RASL11B Missense_Mutation p.V190A 0.17 deleterious(0.05) probably_damaging(0.954) TCGA-IB-7651-01 4 53731934 53731934 G T RASL11B Missense_Mutation p.A237S 0.16 deleterious(0) possibly_damaging(0.561) TCGA-IB-7651-01 4 53786923 53786923 G A SCFD2 Missense_Mutation p.S559F 0.17 deleterious(0) probably_damaging(0.917) TCGA-IB-7651-01 4 54231417 54231417 C T SCFD2 Missense_Mutation p.G231E 0.19 deleterious(0.02) probably_damaging(0.935) TCGA-IB-7651-01 4 54232059 54232059 A G SCFD2 Missense_Mutation p.V17A 0.17 deleterious(0.04) probably_damaging(0.99) TCGA-IB-7651-01 4 54265951 54265951 A C FIP1L1 Missense_Mutation p.K254Q 0.16 deleterious(0) possibly_damaging(0.451) TCGA-IB-7651-01 4 54319276 54319276 G T FIP1L1 Missense_Mutation p.S492I 0.19 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 4 54343147 54343147 A G LNX1 Silent p.G555G 0.19 TCGA-IB-7651-01 4 54930474 54930474 C T CHIC2 5'UTR 0.11 TCGA-IB-7651-01 4 54930482 54930482 C A CHIC2 5'UTR 0.13 TCGA-IB-7651-01 4 54966712 54966712 G A GSX2 Silent p.S67S 0.21 TCGA-IB-7651-01 4 55140704 55140704 G A PDGFRA Missense_Mutation p.R522H 0.20 tolerated(0.57) benign(0.001) TCGA-IB-7651-01 4 55156639 55156639 G A PDGFRA Missense_Mutation p.A1014T 0.19 tolerated(0.26) benign(0.281) TCGA-IB-7651-01 4 55161440 55161440 C T PDGFRA 3'UTR 0.19 TCGA-IB-7651-01 4 55565810 55565810 C T KIT Missense_Mutation p.P212S 0.16 deleterious(0.01) probably_damaging(0.983) TCGA-IB-7651-01 4 55569916 55569916 C A KIT Missense_Mutation p.S261R 0.12 tolerated(0.2) probably_damaging(0.989) TCGA-IB-7651-01 4 55597497 55597497 C T KIT Silent p.S715S 0.16 TCGA-IB-7651-01 4 55602902 55602902 C A KIT Missense_Mutation p.P871H 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 5564829 5564829 T C EVC2 Missense_Mutation p.T1225A 0.22 tolerated(0.32) benign(0.006) TCGA-IB-7651-01 4 55987321 55987321 C A KDR Missense_Mutation p.S35I 0.20 deleterious(0) possibly_damaging(0.866) TCGA-IB-7651-01 4 5620298 5620298 G A EVC2 Silent p.I871I 0.18 TCGA-IB-7651-01 4 56236230 56236230 G T SRD5A3 Missense_Mutation p.R310M 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 56277926 56277926 C T TMEM165 Missense_Mutation p.A118V 0.20 deleterious(0.05) probably_damaging(0.951) TCGA-IB-7651-01 4 56283999 56283999 G A TMEM165 Silent p.P213P 0.19 TCGA-IB-7651-01 4 56304679 56304679 T C CLOCK Missense_Mutation p.T711A 0.15 tolerated(0.32) probably_damaging(0.92) TCGA-IB-7651-01 4 56310933 56310933 A C CLOCK Nonsense_Mutation p.L520* 0.19 TCGA-IB-7651-01 4 5633732 5633732 G A EVC2 Missense_Mutation p.R500W 0.16 deleterious(0.01) benign(0.212) TCGA-IB-7651-01 4 56345083 56345083 A C CLOCK Missense_Mutation p.V52G 0.18 deleterious(0) probably_damaging(0.962) TCGA-IB-7651-01 4 56348963 56348963 G A CLOCK 5'UTR 0.19 TCGA-IB-7651-01 4 56770575 56770575 C T EXOC1 Missense_Mutation p.R867C 0.18 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 4 56831839 56831839 C T CEP135 Silent p.D286D 0.19 TCGA-IB-7651-01 4 56846364 56846364 G A CEP135 Missense_Mutation p.R510H 0.17 tolerated(0.25) benign(0.004) TCGA-IB-7651-01 4 57193927 57193927 G T KIAA1211 Missense_Mutation p.R1220M 0.18 deleterious(0) possibly_damaging(0.702) TCGA-IB-7651-01 4 57194089 57194089 G A KIAA1211 3'UTR 0.16 TCGA-IB-7651-01 4 57194429 57194429 G A KIAA1211 3'UTR 0.21 TCGA-IB-7651-01 4 57215710 57215710 C G AASDH Missense_Mutation p.C736S 0.07 tolerated(0.48) benign(0.001) TCGA-IB-7651-01 4 57244420 57244420 G T AASDH Missense_Mutation p.L188I 0.20 tolerated(0.46) benign(0.356) TCGA-IB-7651-01 4 57266984 57266984 G A PPAT Missense_Mutation p.S327F 0.19 deleterious(0) possibly_damaging(0.886) TCGA-IB-7651-01 4 57269561 57269561 G A PPAT Missense_Mutation p.R137C 0.09 deleterious(0.02) possibly_damaging(0.863) TCGA-IB-7651-01 4 57325540 57325540 C A PAICS Missense_Mutation p.L379I 0.14 benign(0.013) TCGA-IB-7651-01 4 57325556 57325556 T C PAICS Missense_Mutation p.V384A 0.13 benign(0.073) TCGA-IB-7651-01 4 57366836 57366836 G T SRP72 Missense_Mutation p.A605S 0.19 tolerated(0.1) benign(0.126) TCGA-IB-7651-01 4 57776821 57776821 T C REST Missense_Mutation p.M6T 0.22 deleterious(0) possibly_damaging(0.852) TCGA-IB-7651-01 4 57777141 57777141 A C REST Missense_Mutation p.S113R 0.15 tolerated(0.06) benign(0.029) TCGA-IB-7651-01 4 57777432 57777432 G T REST Missense_Mutation p.D210Y 0.13 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 4 57796239 57796239 G T REST Missense_Mutation p.Q405H 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 4 57796834 57796834 G A REST Missense_Mutation p.G604R 0.19 tolerated(0.28) benign(0.003) TCGA-IB-7651-01 4 57829540 57829540 G A NOA1 3'UTR 0.17 TCGA-IB-7651-01 4 57843518 57843518 G T NOA1 Silent p.I78I 0.20 TCGA-IB-7651-01 4 57876529 57876529 G A POLR2B Silent p.V469V 0.07 TCGA-IB-7651-01 4 57887134 57887134 G A POLR2B Missense_Mutation p.R798H 0.18 deleterious(0) possibly_damaging(0.451) TCGA-IB-7651-01 4 57897284 57897284 C A POLR2B 3'UTR 0.08 TCGA-IB-7651-01 4 57897397 57897397 A G IGFBP7 3'UTR 0.23 TCGA-IB-7651-01 4 5803763 5803763 C T EVC Silent p.I797I 0.15 TCGA-IB-7651-01 4 5830449 5830449 C T EVC 3'UTR 0.20 TCGA-IB-7651-01 4 5857930 5857930 C T CRMP1 Missense_Mutation p.D254N 0.21 tolerated(0.07) probably_damaging(1) TCGA-IB-7651-01 4 5966868 5966868 C T C4orf50 Silent p.Q628Q 0.16 TCGA-IB-7651-01 4 5975525 5975525 C T C4orf50 Missense_Mutation p.R564H 0.05 tolerated(1) benign(0.002) TCGA-IB-7651-01 4 5977679 5977679 C T C4orf50 Missense_Mutation p.E532K 0.10 tolerated(0.14) benign(0.175) TCGA-IB-7651-01 4 6080706 6080706 C T JAKMIP1 Missense_Mutation p.R421H 0.20 tolerated(0.06) benign(0.027) TCGA-IB-7651-01 4 619547 619547 C T PDE6B Silent p.C44C 0.09 TCGA-IB-7651-01 4 62598530 62598530 C T LPHN3 Silent p.S151S 0.18 TCGA-IB-7651-01 4 62599163 62599163 G A LPHN3 Silent p.Q362Q 0.15 TCGA-IB-7651-01 4 6293694 6293694 C T WFS1 Missense_Mutation p.R228C 0.21 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 4 6302625 6302625 G T WFS1 Missense_Mutation p.S368I 0.16 deleterious(0) possibly_damaging(0.724) TCGA-IB-7651-01 4 6303071 6303071 C T WFS1 Missense_Mutation p.R517C 0.18 tolerated(0.06) probably_damaging(0.931) TCGA-IB-7651-01 4 6303910 6303910 C T WFS1 Silent p.D796D 0.19 TCGA-IB-7651-01 4 6303932 6303932 C A WFS1 Missense_Mutation p.L804M 0.17 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 4 649781 649781 G A PDE6B Missense_Mutation p.A349T 0.18 deleterious(0.05) benign(0.21) TCGA-IB-7651-01 4 655986 655986 C T PDE6B Missense_Mutation p.R560C 0.22 deleterious(0) possibly_damaging(0.893) TCGA-IB-7651-01 4 6578436 6578436 C T MAN2B2 Silent p.D90D 0.17 TCGA-IB-7651-01 4 6598925 6598925 C T MAN2B2 Silent p.A381A 0.16 TCGA-IB-7651-01 4 6599013 6599013 C T MAN2B2 Missense_Mutation p.R411C 0.19 tolerated(0.06) possibly_damaging(0.855) TCGA-IB-7651-01 4 661780 661780 G A PDE6B Missense_Mutation p.V830M 0.17 tolerated(0.31) benign(0.003) TCGA-IB-7651-01 4 66217294 66217294 A G EPHA5 Missense_Mutation p.V774A 0.15 tolerated(0.09) possibly_damaging(0.593) TCGA-IB-7651-01 4 66280142 66280142 G A EPHA5 Missense_Mutation p.T516M 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-IB-7651-01 4 66356119 66356119 C T EPHA5 Missense_Mutation p.V460I 0.18 tolerated(0.35) benign(0.053) TCGA-IB-7651-01 4 66356255 66356255 G A EPHA5 Silent p.Y414Y 0.17 TCGA-IB-7651-01 4 66361172 66361172 T A EPHA5 Missense_Mutation p.T334S 0.18 tolerated(0.4) benign(0.104) TCGA-IB-7651-01 4 676148 676148 C T MFSD7 Missense_Mutation p.A427T 0.17 deleterious(0) benign(0.439) TCGA-IB-7651-01 4 676654 676654 G A MFSD7 Silent p.L393L 0.20 TCGA-IB-7651-01 4 68374686 68374686 C A CENPC Missense_Mutation p.A584S 0.15 tolerated(0.48) benign(0.026) TCGA-IB-7651-01 4 68490771 68490771 G A UBA6 Missense_Mutation p.R885C 0.21 deleterious(0.01) probably_damaging(0.985) TCGA-IB-7651-01 4 68610471 68610471 C T GNRHR Missense_Mutation p.S186N 0.17 tolerated(0.13) benign(0.004) TCGA-IB-7651-01 4 6862743 6862743 G T KIAA0232 Missense_Mutation p.A212S 0.23 deleterious(0.01) possibly_damaging(0.762) TCGA-IB-7651-01 4 6863883 6863883 G A KIAA0232 Missense_Mutation p.E592K 0.17 tolerated(0.07) possibly_damaging(0.533) TCGA-IB-7651-01 4 6864159 6864159 A G KIAA0232 Missense_Mutation p.T684A 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-IB-7651-01 4 6865260 6865260 G A KIAA0232 Missense_Mutation p.V1051I 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-IB-7651-01 4 68688070 68688070 T C TMPRSS11D Silent p.Q414Q 0.18 TCGA-IB-7651-01 4 68725349 68725349 A G TMPRSS11D Missense_Mutation p.V19A 0.16 deleterious(0) possibly_damaging(0.622) TCGA-IB-7651-01 4 68928420 68928420 A G TMPRSS11F Intron 0.22 TCGA-IB-7651-01 4 68928670 68928670 T G TMPRSS11F Intron 0.19 TCGA-IB-7651-01 4 69184570 69184570 C A YTHDC1 Missense_Mutation p.K565N 0.08 deleterious(0.02) benign(0.444) TCGA-IB-7651-01 4 69197819 69197819 A G YTHDC1 Splice_Site p.X374_splice 0.20 TCGA-IB-7651-01 4 69202958 69202958 C T YTHDC1 Missense_Mutation p.E224K 0.14 tolerated_low_confidence(0.28) unknown(0) TCGA-IB-7651-01 4 69203124 69203124 C A YTHDC1 Missense_Mutation p.Q168H 0.19 tolerated_low_confidence(0.47) unknown(0) TCGA-IB-7651-01 4 6925330 6925330 G A TBC1D14 Missense_Mutation p.E72K 0.19 tolerated_low_confidence(0.1) probably_damaging(0.998) TCGA-IB-7651-01 4 69327568 69327568 T G TMPRSS11E Missense_Mutation p.V14G 0.18 tolerated(0.49) benign(0.021) TCGA-IB-7651-01 4 69344605 69344605 C T TMPRSS11E Missense_Mutation p.L336F 0.17 tolerated(0.08) benign(0.011) TCGA-IB-7651-01 4 69682216 69682216 C T UGT2B10 Missense_Mutation p.A160V 0.17 deleterious(0.02) possibly_damaging(0.562) TCGA-IB-7651-01 4 69796399 69796399 C T UGT2A3 Missense_Mutation p.G390E 0.08 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 7008409 7008409 C T TBC1D14 Silent p.L468L 0.15 TCGA-IB-7651-01 4 70360997 70360997 G A UGT2B4 Missense_Mutation p.P195S 0.14 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 4 7044246 7044246 G T CCDC96 Missense_Mutation p.F140L 0.17 tolerated_low_confidence(0.61) benign(0) TCGA-IB-7651-01 4 7062618 7062618 C T GRPEL1 Missense_Mutation p.A209T 0.04 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 70822037 70822037 A C CSN2 3'UTR 0.18 TCGA-IB-7651-01 4 71024115 71024115 C A C4orf40 Missense_Mutation p.P49H 0.15 deleterious(0) probably_damaging(0.979) TCGA-IB-7651-01 4 71024336 71024336 G A C4orf40 Missense_Mutation p.A123T 0.18 deleterious(0.03) unknown(0) TCGA-IB-7651-01 4 71024410 71024410 G T C4orf40 Missense_Mutation p.E147D 0.20 tolerated(0.52) unknown(0) TCGA-IB-7651-01 4 71066290 71066290 A G ODAM Missense_Mutation p.Q167R 0.20 deleterious(0.03) benign(0.031) TCGA-IB-7651-01 4 71201322 71201322 G T CABS1 Missense_Mutation p.S189I 0.18 tolerated(0.16) benign(0.027) TCGA-IB-7651-01 4 71275901 71275901 T G PROL1 3'UTR 0.18 TCGA-IB-7651-01 4 71384505 71384505 C T AMTN Missense_Mutation p.T4M 0.16 tolerated_low_confidence(0.69) benign(0.009) TCGA-IB-7651-01 4 71396761 71396761 A C AMTN Missense_Mutation p.Q121H 0.20 deleterious(0.04) benign(0.037) TCGA-IB-7651-01 4 71472130 71472130 A G AMBN Missense_Mutation p.T343A 0.19 tolerated(0.08) benign(0.002) TCGA-IB-7651-01 4 71508510 71508510 G A ENAM Missense_Mutation p.S456N 0.21 tolerated(0.13) benign(0.205) TCGA-IB-7651-01 4 71510041 71510041 A C ENAM Missense_Mutation p.Q966H 0.23 deleterious(0.02) benign(0.333) TCGA-IB-7651-01 4 71510303 71510303 C A ENAM Missense_Mutation p.H1054N 0.18 deleterious(0.01) benign(0.122) TCGA-IB-7651-01 4 71522187 71522187 G T IGJ Silent p.I113I 0.21 TCGA-IB-7651-01 4 71555130 71555130 C T UTP3 Missense_Mutation p.P246S 0.17 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 4 71648856 71648856 C T RUFY3 Nonsense_Mutation p.R315* 0.16 TCGA-IB-7651-01 4 71650581 71650581 G T RUFY3 Missense_Mutation p.E352D 0.16 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 4 71693715 71693715 C T GRSF1 Missense_Mutation p.R330Q 0.20 tolerated(0.48) possibly_damaging(0.545) TCGA-IB-7651-01 4 72649806 72649806 T C GC Intron 0.25 TCGA-IB-7651-01 4 727471 727471 T C PCGF3 Translation_Start_Site p.M1? 0.15 deleterious(0) benign(0.175) TCGA-IB-7651-01 4 72897568 72897568 G A NPFFR2 5'UTR 0.14 TCGA-IB-7651-01 4 72897828 72897828 T C NPFFR2 Silent p.S70S 0.18 TCGA-IB-7651-01 4 72994599 72994599 C A NPFFR2 Missense_Mutation p.F199L 0.18 deleterious(0.05) probably_damaging(0.991) TCGA-IB-7651-01 4 73161482 73161482 C A ADAMTS3 Missense_Mutation p.G871V 0.19 deleterious(0.02) possibly_damaging(0.899) TCGA-IB-7651-01 4 73175167 73175167 T C ADAMTS3 Missense_Mutation p.N709S 0.18 deleterious(0.03) benign(0.191) TCGA-IB-7651-01 4 73181645 73181645 G T ADAMTS3 Missense_Mutation p.P510H 0.16 deleterious(0) probably_damaging(0.977) TCGA-IB-7651-01 4 73188804 73188804 A C ADAMTS3 Missense_Mutation p.I291S 0.19 deleterious(0.01) probably_damaging(0.931) TCGA-IB-7651-01 4 73205355 73205355 C T ADAMTS3 Silent p.Q239Q 0.18 TCGA-IB-7651-01 4 73280626 73280626 C T ADAMTS3 Silent p.Q189Q 0.07 TCGA-IB-7651-01 4 73414462 73414462 C T ADAMTS3 Silent p.Q79Q 0.21 TCGA-IB-7651-01 4 73944497 73944497 G T ANKRD17 Missense_Mutation p.P2424T 0.09 benign(0.001) TCGA-IB-7651-01 4 73957906 73957906 T G ANKRD17 Silent p.S1813S 0.19 TCGA-IB-7651-01 4 73964157 73964157 C T ANKRD17 Missense_Mutation p.A1552T 0.17 benign(0.002) TCGA-IB-7651-01 4 73986015 73986015 A G ANKRD17 Missense_Mutation p.Y1297H 0.20 possibly_damaging(0.796) TCGA-IB-7651-01 4 73990976 73990976 C T ANKRD17 Silent p.E1096E 0.19 TCGA-IB-7651-01 4 74124155 74124155 G A ANKRD17 Silent p.N77N 0.14 TCGA-IB-7651-01 4 74124188 74124188 C T ANKRD17 Silent p.P66P 0.19 TCGA-IB-7651-01 4 74310810 74310810 G T AFP Nonsense_Mutation p.G272* 0.18 TCGA-IB-7651-01 4 74357693 74357693 C T AFM Silent p.N316N 0.23 TCGA-IB-7651-01 4 74442353 74442353 C A RASSF6 Missense_Mutation p.D305Y 0.18 deleterious(0) probably_damaging(0.972) TCGA-IB-7651-01 4 74447568 74447568 C A RASSF6 Missense_Mutation p.Q261H 0.16 tolerated(0.28) benign(0.168) TCGA-IB-7651-01 4 74846978 74846978 G A PF4 Silent p.C83C 0.17 TCGA-IB-7651-01 4 75147231 75147231 G A MTHFD2L Missense_Mutation p.G299R 0.24 deleterious(0.04) benign(0.086) TCGA-IB-7651-01 4 75959104 75959104 G A PARM1 Missense_Mutation p.A261T 0.14 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 4 75971390 75971390 G A PARM1 Missense_Mutation p.R289K 0.16 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 4 76407683 76407683 C T RCHY1 3'UTR 0.10 TCGA-IB-7651-01 4 76452513 76452513 T G THAP6 3'UTR 0.18 TCGA-IB-7651-01 4 76523300 76523300 A G CDKL2 Silent p.D327D 0.16 TCGA-IB-7651-01 4 76582860 76582860 G A G3BP2 Missense_Mutation p.R78C 0.19 tolerated(0.08) benign(0.013) TCGA-IB-7651-01 4 76692258 76692258 C G USO1 Missense_Mutation p.L177V 0.16 deleterious(0) possibly_damaging(0.899) TCGA-IB-7651-01 4 76733463 76733463 C A USO1 Missense_Mutation p.L921I 0.12 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 4 76794284 76794284 C T PPEF2 Missense_Mutation p.R501H 0.22 tolerated(0.18) probably_damaging(0.999) TCGA-IB-7651-01 4 76811174 76811174 C T PPEF2 Missense_Mutation p.R118H 0.15 tolerated(0.53) benign(0.026) TCGA-IB-7651-01 4 76895229 76895229 C T SDAD1 Silent p.K212K 0.16 TCGA-IB-7651-01 4 77036596 77036596 C T NUP54 Missense_Mutation p.D483N 0.13 deleterious(0.04) benign(0.046) TCGA-IB-7651-01 4 77288498 77288498 A G CCDC158 Silent p.A593A 0.17 TCGA-IB-7651-01 4 77304873 77304873 C A CCDC158 Missense_Mutation p.A249S 0.15 tolerated(1) benign(0.066) TCGA-IB-7651-01 4 77305391 77305391 G A CCDC158 Silent p.I192I 0.18 TCGA-IB-7651-01 4 7731317 7731317 A G SORCS2 Missense_Mutation p.T996A 0.20 tolerated(0.09) benign(0.049) TCGA-IB-7651-01 4 77631357 77631357 C T SHROOM3 Silent p.F124F 0.19 TCGA-IB-7651-01 4 77660200 77660200 C T SHROOM3 Nonsense_Mutation p.R292* 0.20 TCGA-IB-7651-01 4 77661164 77661164 C T SHROOM3 Missense_Mutation p.A613V 0.16 tolerated(0.72) benign(0.001) TCGA-IB-7651-01 4 77661560 77661560 C T SHROOM3 Missense_Mutation p.P745L 0.09 tolerated(0.12) benign(0.006) TCGA-IB-7651-01 4 77675851 77675851 C T SHROOM3 Silent p.G1405G 0.17 TCGA-IB-7651-01 4 77675938 77675938 C T SHROOM3 Silent p.A1434A 0.19 TCGA-IB-7651-01 4 7774741 7774741 G A AFAP1 Intron 0.21 TCGA-IB-7651-01 4 77817328 77817328 C T SOWAHB Missense_Mutation p.A559T 0.23 tolerated(0.43) possibly_damaging(0.483) TCGA-IB-7651-01 4 77817687 77817687 G T SOWAHB Missense_Mutation p.A439D 0.18 tolerated(0.06) possibly_damaging(0.665) TCGA-IB-7651-01 4 77976531 77976531 G A CCNI Silent p.F154F 0.07 TCGA-IB-7651-01 4 78079683 78079683 C T CCNG2 Intron 0.17 TCGA-IB-7651-01 4 78082647 78082647 G A CCNG2 Missense_Mutation p.S181N 0.18 tolerated(0.99) benign(0.002) TCGA-IB-7651-01 4 78086953 78086953 G A CCNG2 Splice_Site p.X304_splice 0.16 TCGA-IB-7651-01 4 78650044 78650044 C T CNOT6L Missense_Mutation p.V406M 0.14 deleterious(0) probably_damaging(0.952) TCGA-IB-7651-01 4 78650176 78650176 G A CNOT6L Missense_Mutation p.H362Y 0.16 deleterious(0.04) probably_damaging(0.999) TCGA-IB-7651-01 4 78650217 78650217 G A CNOT6L Missense_Mutation p.A348V 0.20 tolerated(0.32) benign(0.003) TCGA-IB-7651-01 4 78695823 78695823 T G CNOT6L Missense_Mutation p.T59P 0.15 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 4 78808417 78808417 T C MRPL1 Missense_Mutation p.F177S 0.17 deleterious(0) benign(0.382) TCGA-IB-7651-01 4 79403572 79403572 C T FRAS1 Nonsense_Mutation p.Q2879* 0.19 TCGA-IB-7651-01 4 79421054 79421054 C T FRAS1 Nonsense_Mutation p.R3099* 0.20 TCGA-IB-7651-01 4 79428591 79428591 T G FRAS1 Missense_Mutation p.F3111L 0.14 benign(0.002) TCGA-IB-7651-01 4 79461814 79461814 G A FRAS1 Missense_Mutation p.D3859N 0.22 benign(0) TCGA-IB-7651-01 4 7968625 7968625 G T ABLIM2 3'UTR 0.22 TCGA-IB-7651-01 4 79832926 79832926 T A BMP2K Missense_Mutation p.H1075Q 0.21 deleterious_low_confidence(0) unknown(0) TCGA-IB-7651-01 4 8009698 8009698 T C ABLIM2 Intron 0.20 TCGA-IB-7651-01 4 80328744 80328744 C A GK2 Missense_Mutation p.R204M 0.14 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 80328787 80328787 C T GK2 Missense_Mutation p.V190I 0.16 tolerated(0.37) benign(0.008) TCGA-IB-7651-01 4 80329323 80329323 G A GK2 Missense_Mutation p.P11L 0.13 deleterious(0.02) benign(0.046) TCGA-IB-7651-01 4 8062713 8062713 G A ABLIM2 Silent p.G248G 0.13 TCGA-IB-7651-01 4 8089918 8089918 C T ABLIM2 Silent p.A144A 0.13 TCGA-IB-7651-01 4 8108314 8108314 C T ABLIM2 Missense_Mutation p.A21T 0.19 deleterious(0.03) possibly_damaging(0.488) TCGA-IB-7651-01 4 81123374 81123374 G T PRDM8 Missense_Mutation p.S253I 0.14 tolerated_low_confidence(0.06) benign(0.137) TCGA-IB-7651-01 4 81504321 81504321 G A C4orf22 Missense_Mutation p.R106H 0.18 deleterious(0) benign(0.239) TCGA-IB-7651-01 4 81967122 81967122 C A BMP3 Missense_Mutation p.L183M 0.15 tolerated(0.17) probably_damaging(0.917) TCGA-IB-7651-01 4 81967161 81967161 T A BMP3 Missense_Mutation p.S196T 0.17 tolerated(0.29) benign(0.026) TCGA-IB-7651-01 4 8221133 8221133 G A SH3TC1 Missense_Mutation p.D330N 0.20 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 4 8228996 8228996 G A SH3TC1 Nonsense_Mutation p.W525* 0.13 TCGA-IB-7651-01 4 8229700 8229700 G T SH3TC1 Missense_Mutation p.S760I 0.18 tolerated(0.36) benign(0.004) TCGA-IB-7651-01 4 8229864 8229864 G T SH3TC1 Missense_Mutation p.A815S 0.20 tolerated(0.43) benign(0.048) TCGA-IB-7651-01 4 8242718 8242718 C A SH3TC1 3'UTR 0.19 TCGA-IB-7651-01 4 83411247 83411247 G T TMEM150C Missense_Mutation p.L170M 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 4 83742226 83742226 A G SEC31A Silent p.R1149R 0.15 TCGA-IB-7651-01 4 83784500 83784500 C A SEC31A Nonsense_Mutation p.G494* 0.07 TCGA-IB-7651-01 4 83793159 83793159 C T SEC31A Silent p.V240V 0.22 TCGA-IB-7651-01 4 83793168 83793168 C T SEC31A Silent p.R237R 0.19 TCGA-IB-7651-01 4 83822022 83822022 C A THAP9 Missense_Mutation p.L23I 0.17 tolerated(0.32) benign(0.053) TCGA-IB-7651-01 4 83838940 83838940 C A THAP9 Missense_Mutation p.N525K 0.17 deleterious(0.05) possibly_damaging(0.655) TCGA-IB-7651-01 4 83861050 83861050 C T LIN54 Missense_Mutation p.V412I 0.20 tolerated(0.42) benign(0.043) TCGA-IB-7651-01 4 8390958 8390958 G A ACOX3 Silent p.P493P 0.21 TCGA-IB-7651-01 4 8396442 8396442 C T ACOX3 Missense_Mutation p.A362T 0.23 deleterious(0.03) possibly_damaging(0.893) TCGA-IB-7651-01 4 84390190 84390190 T C FAM175A Silent p.T197T 0.21 TCGA-IB-7651-01 4 84390218 84390218 G A FAM175A Missense_Mutation p.S188F 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 84391390 84391390 G A FAM175A Nonsense_Mutation p.R148* 0.21 TCGA-IB-7651-01 4 845593 845593 C T GAK Silent p.S1151S 0.16 TCGA-IB-7651-01 4 845717 845717 G A GAK Missense_Mutation p.A1110V 0.19 tolerated(0.12) benign(0.005) TCGA-IB-7651-01 4 8470237 8470237 A C TRMT44 Intron 0.23 TCGA-IB-7651-01 4 85600086 85600086 C T WDFY3 Missense_Mutation p.S3378N 0.16 tolerated(0.87) benign(0) TCGA-IB-7651-01 4 85605150 85605150 G A WDFY3 Silent p.N3224N 0.20 TCGA-IB-7651-01 4 85617954 85617954 C T WDFY3 Silent p.K2873K 0.15 TCGA-IB-7651-01 4 85715716 85715716 C T WDFY3 Missense_Mutation p.R1148Q 0.12 deleterious(0.02) benign(0.148) TCGA-IB-7651-01 4 85722 85722 G A Z95704.2 RNA 0.18 TCGA-IB-7651-01 4 85750255 85750255 A C WDFY3 Silent p.L286L 0.17 TCGA-IB-7651-01 4 85750273 85750273 G A WDFY3 Silent p.V280V 0.18 TCGA-IB-7651-01 4 85758135 85758135 T G WDFY3 Missense_Mutation p.N175H 0.17 deleterious(0.04) benign(0.001) TCGA-IB-7651-01 4 860197 860197 G A GAK Missense_Mutation p.H1000Y 0.15 tolerated(0.14) possibly_damaging(0.71) TCGA-IB-7651-01 4 8616132 8616132 G A CPZ Silent p.T470T 0.18 TCGA-IB-7651-01 4 86491742 86491742 G A ARHGAP24 Silent p.G16G 0.18 TCGA-IB-7651-01 4 86629 86629 C A Z95704.2 RNA 0.18 TCGA-IB-7651-01 4 86725 86725 G T Z95704.2 RNA 0.17 TCGA-IB-7651-01 4 86863294 86863294 T C ARHGAP24 Missense_Mutation p.V156A 0.17 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 4 86896 86896 T G Z95704.2 RNA 0.18 TCGA-IB-7651-01 4 86916302 86916302 C T ARHGAP24 Nonsense_Mutation p.R499* 0.19 TCGA-IB-7651-01 4 86938374 86938374 C T MAPK10 3'UTR 0.18 TCGA-IB-7651-01 4 87080 87080 A G Z95704.2 RNA 0.19 TCGA-IB-7651-01 4 871406 871406 A G GAK Missense_Mutation p.M618T 0.16 deleterious(0) probably_damaging(0.969) TCGA-IB-7651-01 4 87358 87358 C T Z95704.2 3'Flank 0.12 TCGA-IB-7651-01 4 87622493 87622493 C T PTPN13 Missense_Mutation p.S245F 0.14 tolerated(0.06) probably_damaging(0.945) TCGA-IB-7651-01 4 87637706 87637706 T C PTPN13 Missense_Mutation p.Y407H 0.12 tolerated(0.06) probably_damaging(0.936) TCGA-IB-7651-01 4 87672030 87672030 A C PTPN13 Missense_Mutation p.K1020Q 0.16 tolerated(0.22) benign(0.331) TCGA-IB-7651-01 4 877192 877192 G A GAK Missense_Mutation p.R439W 0.15 deleterious(0) probably_damaging(0.949) TCGA-IB-7651-01 4 87752952 87752952 A C SLC10A6 Missense_Mutation p.I193S 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 87968170 87968170 G A AFF1 Silent p.P161P 0.08 TCGA-IB-7651-01 4 88035526 88035526 C A AFF1 Missense_Mutation p.P514H 0.12 deleterious(0.01) unknown(0) TCGA-IB-7651-01 4 88035561 88035561 C A AFF1 Missense_Mutation p.L526M 0.12 deleterious(0.03) unknown(0) TCGA-IB-7651-01 4 88036157 88036157 C T AFF1 Silent p.S724S 0.19 TCGA-IB-7651-01 4 88047336 88047336 C T AFF1 Missense_Mutation p.P887S 0.16 tolerated(0.5) unknown(0) TCGA-IB-7651-01 4 88231425 88231425 G A HSD17B13 Missense_Mutation p.S261L 0.21 tolerated(0.47) benign(0.066) TCGA-IB-7651-01 4 88261694 88261694 G A HSD17B11 Nonsense_Mutation p.Q254* 0.19 TCGA-IB-7651-01 4 88278563 88278563 C T HSD17B11 Missense_Mutation p.S188N 0.18 deleterious(0) probably_damaging(0.985) TCGA-IB-7651-01 4 88359522 88359522 G A NUDT9 Silent p.P147P 0.19 TCGA-IB-7651-01 4 88400699 88400699 G A SPARCL1 Nonsense_Mutation p.R617* 0.20 TCGA-IB-7651-01 4 88414858 88414858 C T SPARCL1 Missense_Mutation p.S365N 0.21 deleterious(0.03) benign(0.113) TCGA-IB-7651-01 4 88415481 88415481 G T SPARCL1 Silent p.I157I 0.17 TCGA-IB-7651-01 4 88415552 88415553 - T SPARCL1 Frame_Shift_Ins p.L134Tfs*6 0.17 TCGA-IB-7651-01 4 88731834 88731834 C A IBSP Missense_Mutation p.S108Y 0.18 deleterious(0.04) probably_damaging(0.914) TCGA-IB-7651-01 4 88732530 88732530 A T IBSP Missense_Mutation p.N141I 0.18 tolerated(0.1) benign(0.446) TCGA-IB-7651-01 4 887739 887739 G A GAK Missense_Mutation p.A267V 0.29 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 4 88898046 88898046 C T SPP1 5'UTR 0.19 TCGA-IB-7651-01 4 88959637 88959637 C T PKD2 Missense_Mutation p.P360S 0.17 tolerated(0.64) possibly_damaging(0.612) TCGA-IB-7651-01 4 88968016 88968016 C T PKD2 Silent p.I514I 0.18 TCGA-IB-7651-01 4 89016716 89016716 G A ABCG2 Silent p.L565L 0.14 TCGA-IB-7651-01 4 89020601 89020601 C A ABCG2 Splice_Site p.X456_splice 0.17 TCGA-IB-7651-01 4 89034473 89034473 G A ABCG2 Silent p.P392P 0.20 TCGA-IB-7651-01 4 89199713 89199713 G T PPM1K Missense_Mutation p.T8N 0.21 tolerated_low_confidence(1) benign(0.001) TCGA-IB-7651-01 4 89317258 89317258 G T HERC6 Missense_Mutation p.R284I 0.17 tolerated(0.41) benign(0.008) TCGA-IB-7651-01 4 89425454 89425454 G A HERC5 Missense_Mutation p.R885Q 0.18 tolerated(1) benign(0.003) TCGA-IB-7651-01 4 89571092 89571092 G A HERC3 Missense_Mutation p.A110T 0.19 tolerated(0.4) possibly_damaging(0.874) TCGA-IB-7651-01 4 89708990 89708990 T C FAM13A Silent p.G395G 0.19 TCGA-IB-7651-01 4 90034783 90034783 T G TIGD2 Missense_Mutation p.L220V 0.17 tolerated(0.2) benign(0.393) TCGA-IB-7651-01 4 90169956 90169956 C T GPRIN3 Missense_Mutation p.E436K 0.16 tolerated(0.09) benign(0.027) TCGA-IB-7651-01 4 90170801 90170801 G A GPRIN3 Missense_Mutation p.S154F 0.19 tolerated(0.2) benign(0.014) TCGA-IB-7651-01 4 90856522 90856522 T C MMRN1 Missense_Mutation p.F564S 0.19 tolerated(0.17) benign(0.01) TCGA-IB-7651-01 4 90872841 90872841 A G MMRN1 Silent p.R1068R 0.17 TCGA-IB-7651-01 4 90874186 90874186 G A MMRN1 Missense_Mutation p.A1102T 0.17 tolerated(0.09) probably_damaging(1) TCGA-IB-7651-01 4 91230540 91230540 G T CCSER1 Missense_Mutation p.A369S 0.20 tolerated(0.48) benign(0.006) TCGA-IB-7651-01 4 93225744 93225744 G A GRID2 5'UTR 0.18 TCGA-IB-7651-01 4 94344105 94344105 G A GRID2 Missense_Mutation p.E511K 0.20 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 4 944245 944245 C T TMEM175 Missense_Mutation p.R77W 0.18 deleterious(0) probably_damaging(0.985) TCGA-IB-7651-01 4 94547517 94547517 C A GRID2 Missense_Mutation p.T764N 0.20 tolerated(0.34) benign(0.001) TCGA-IB-7651-01 4 947071 947071 C A TMEM175 Missense_Mutation p.L186M 0.20 deleterious(0.02) probably_damaging(0.954) TCGA-IB-7651-01 4 94750764 94750764 C T ATOH1 Silent p.A229A 0.21 TCGA-IB-7651-01 4 95174129 95174129 C T SMARCAD1 Missense_Mutation p.L418F 0.18 deleterious(0.02) possibly_damaging(0.894) TCGA-IB-7651-01 4 95204434 95204434 C A SMARCAD1 Nonsense_Mutation p.C965* 0.14 TCGA-IB-7651-01 4 952124 952124 A G TMEM175 Missense_Mutation p.Q452R 0.17 deleterious(0.01) probably_damaging(0.96) TCGA-IB-7651-01 4 95508304 95508304 C T PDLIM5 Intron 0.16 TCGA-IB-7651-01 4 9557806 9557806 G A MIR548I2 RNA 0.16 TCGA-IB-7651-01 4 956377 956377 C T DGKQ Missense_Mutation p.R687H 0.17 deleterious(0.04) probably_damaging(1) TCGA-IB-7651-01 4 96104083 96104083 C T UNC5C Missense_Mutation p.G806R 0.21 tolerated(0.07) probably_damaging(1) TCGA-IB-7651-01 4 96106260 96106260 G A UNC5C Missense_Mutation p.R742C 0.20 deleterious(0.05) probably_damaging(0.994) TCGA-IB-7651-01 4 96140199 96140199 T C UNC5C Silent p.L522L 0.18 TCGA-IB-7651-01 4 96163599 96163599 A C UNC5C Silent p.T363T 0.24 TCGA-IB-7651-01 4 96163662 96163662 C T UNC5C Silent p.A342A 0.16 TCGA-IB-7651-01 4 96163682 96163682 G A UNC5C Missense_Mutation p.R336C 0.13 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 962266 962266 C T DGKQ Splice_Site p.X179_splice 0.24 TCGA-IB-7651-01 4 96761415 96761415 A G PDHA2 Silent p.K38K 0.17 TCGA-IB-7651-01 4 99064225 99064225 T C STPG2 Missense_Mutation p.Y26C 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 4 99214651 99214651 G T RAP1GDS1 Missense_Mutation p.A34S 0.19 tolerated(0.11) probably_damaging(0.968) TCGA-IB-7651-01 4 995495 995495 G A IDUA Silent p.S206S 0.23 TCGA-IB-7651-01 4 99969935 99969935 C T METAP1 Missense_Mutation p.A280V 0.22 tolerated(0.11) probably_damaging(0.998) TCGA-IB-7651-01 4 9998463 9998463 C T SLC2A9 Missense_Mutation p.A118T 0.17 tolerated(0.07) probably_damaging(0.916) TCGA-IB-7651-01 4 99997895 99997895 C T ADH5 Missense_Mutation p.G175D 0.15 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 4 99998042 99998042 C T ADH5 Missense_Mutation p.G126D 0.07 deleterious(0.01) benign(0.376) TCGA-IB-7651-01 5 100191813 100191813 A C ST8SIA4 Missense_Mutation p.V264G 0.18 probably_damaging(0.916) TCGA-IB-7651-01 5 100238679 100238679 C T ST8SIA4 5'UTR 0.15 TCGA-IB-7651-01 5 101583122 101583122 C T SLCO4C1 Missense_Mutation p.E549K 0.19 tolerated(0.89) benign(0.02) TCGA-IB-7651-01 5 101631905 101631905 C T SLCO4C1 Missense_Mutation p.R21H 0.18 tolerated(0.14) benign(0.005) TCGA-IB-7651-01 5 101834238 101834238 T C SLCO6A1 Missense_Mutation p.N104S 0.17 tolerated(0.18) benign(0.288) TCGA-IB-7651-01 5 102295657 102295657 C A PAM Silent p.T328T 0.19 TCGA-IB-7651-01 5 102343346 102343346 A G PAM Missense_Mutation p.I734V 0.21 tolerated(0.88) possibly_damaging(0.702) TCGA-IB-7651-01 5 102364643 102364643 C A PAM Silent p.G933G 0.17 TCGA-IB-7651-01 5 10236629 10236629 C T FAM173B Silent p.V135V 0.15 TCGA-IB-7651-01 5 10239412 10239412 T G FAM173B Missense_Mutation p.S25R 0.20 tolerated(0.25) benign(0.006) TCGA-IB-7651-01 5 10250488 10250488 T C CCT5 Silent p.Y12Y 0.14 TCGA-IB-7651-01 5 10256191 10256191 C T CCT5 Silent p.S152S 0.11 TCGA-IB-7651-01 5 10258614 10258614 C T CCT5 Silent p.Y280Y 0.15 TCGA-IB-7651-01 5 10261800 10261800 C T CCT5 Silent p.I374I 0.17 TCGA-IB-7651-01 5 1034966 1034966 C T NKD2 Silent p.T174T 0.16 TCGA-IB-7651-01 5 1052522 1052522 G T SLC12A7 Missense_Mutation p.L1069I 0.08 deleterious(0.05) benign(0.399) TCGA-IB-7651-01 5 1052541 1052541 G A SLC12A7 Silent p.T1062T 0.06 TCGA-IB-7651-01 5 107216798 107216798 G A FBXL17 Silent p.A635A 0.08 TCGA-IB-7651-01 5 107559841 107559841 C T FBXL17 Missense_Mutation p.G532E 0.19 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 5 108168620 108168620 G T FER Missense_Mutation p.Q119H 0.20 deleterious(0.05) possibly_damaging(0.885) TCGA-IB-7651-01 5 108281903 108281903 T G FER Missense_Mutation p.S437A 0.20 tolerated(0.5) benign(0.002) TCGA-IB-7651-01 5 108290635 108290635 T C FER Splice_Site p.X511_splice 0.17 TCGA-IB-7651-01 5 108294941 108294941 G A FER Missense_Mutation p.E517K 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 5 1084037 1084037 G A SLC12A7 Missense_Mutation p.R318C 0.18 deleterious(0.05) possibly_damaging(0.462) TCGA-IB-7651-01 5 108516459 108516459 C T FER Missense_Mutation p.A687V 0.15 deleterious(0) possibly_damaging(0.811) TCGA-IB-7651-01 5 108523373 108523373 C T FER 3'UTR 0.19 TCGA-IB-7651-01 5 109156033 109156033 G T MAN2A1 Missense_Mutation p.G814V 0.20 deleterious(0) possibly_damaging(0.851) TCGA-IB-7651-01 5 109190997 109190997 G A MAN2A1 Missense_Mutation p.D1045N 0.14 deleterious(0.02) possibly_damaging(0.585) TCGA-IB-7651-01 5 109191007 109191007 T C MAN2A1 Missense_Mutation p.L1048P 0.19 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 5 109202737 109202737 T G MAN2A1 3'UTR 0.21 TCGA-IB-7651-01 5 110083868 110083868 C A SLC25A46 Missense_Mutation p.P156H 0.06 deleterious(0.04) possibly_damaging(0.525) TCGA-IB-7651-01 5 110409278 110409278 G A TSLP Missense_Mutation p.E96K 0.18 tolerated(0.13) benign(0.258) TCGA-IB-7651-01 5 110835588 110835588 A G STARD4 Missense_Mutation p.L205S 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 110835647 110835647 C T STARD4 Silent p.A185A 0.19 TCGA-IB-7651-01 5 111091557 111091557 C T NREP Intron 0.12 TCGA-IB-7651-01 5 111598231 111598231 T G EPB41L4A Missense_Mutation p.K201T 0.18 deleterious(0) possibly_damaging(0.85) TCGA-IB-7651-01 5 111615981 111615981 C T EPB41L4A Missense_Mutation p.E82K 0.18 tolerated(0.31) possibly_damaging(0.869) TCGA-IB-7651-01 5 111643154 111643154 C T EPB41L4A Missense_Mutation p.V45I 0.15 deleterious(0.04) benign(0.196) TCGA-IB-7651-01 5 112111375 112111375 T C APC Missense_Mutation p.Y158H 0.18 probably_damaging(1) TCGA-IB-7651-01 5 112128185 112128185 C T APC Missense_Mutation p.R230C 0.20 possibly_damaging(0.798) TCGA-IB-7651-01 5 112154761 112154761 T C APC Silent p.C344C 0.21 TCGA-IB-7651-01 5 112176129 112176129 C A APC Missense_Mutation p.P1613H 0.10 probably_damaging(0.999) TCGA-IB-7651-01 5 112228631 112228631 G T ZRSR1 Missense_Mutation p.R432M 0.20 deleterious(0.01) possibly_damaging(0.507) TCGA-IB-7651-01 5 112257028 112257028 C T REEP5 Intron 0.14 TCGA-IB-7651-01 5 112321682 112321682 T C DCP2 Silent p.A68A 0.17 TCGA-IB-7651-01 5 112399705 112399705 C A MCC Missense_Mutation p.S730I 0.20 deleterious(0.03) probably_damaging(0.988) TCGA-IB-7651-01 5 112630168 112630168 G A MCC Intron 0.09 TCGA-IB-7651-01 5 112770312 112770312 G A TSSK1B Silent p.T75T 0.19 TCGA-IB-7651-01 5 112849636 112849636 G T YTHDC2 Missense_Mutation p.G15V 0.29 tolerated_low_confidence(0.25) benign(0) TCGA-IB-7651-01 5 112889540 112889540 G A YTHDC2 Missense_Mutation p.V681I 0.27 tolerated(0.41) benign(0.012) TCGA-IB-7651-01 5 11346613 11346613 G A CTNND2 Missense_Mutation p.A500V 0.10 tolerated(0.12) benign(0.102) TCGA-IB-7651-01 5 11384844 11384844 C T CTNND2 Silent p.E370E 0.20 TCGA-IB-7651-01 5 11384997 11384997 G A CTNND2 Silent p.I319I 0.20 TCGA-IB-7651-01 5 114462446 114462446 C A TRIM36 Missense_Mutation p.K647N 0.19 tolerated(0.09) possibly_damaging(0.88) TCGA-IB-7651-01 5 114483023 114483023 C A TRIM36 Missense_Mutation p.D123Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 5 114499317 114499317 C A TRIM36 Missense_Mutation p.D66Y 0.18 tolerated(0.87) probably_damaging(0.989) TCGA-IB-7651-01 5 114515703 114515703 C T TRIM36 Missense_Mutation p.G11D 0.16 deleterious(0.03) benign(0.193) TCGA-IB-7651-01 5 114604698 114604698 C A CCDC112 Splice_Site p.X477_splice 0.16 TCGA-IB-7651-01 5 114605433 114605433 T G CCDC112 Missense_Mutation p.Q465H 0.16 deleterious(0) benign(0.212) TCGA-IB-7651-01 5 114611181 114611181 C T CCDC112 Missense_Mutation p.S217N 0.19 tolerated(0.13) benign(0.222) TCGA-IB-7651-01 5 114615393 114615393 A G CCDC112 Silent p.S104S 0.18 TCGA-IB-7651-01 5 114916863 114916863 C T TMED7-TICAM2 Missense_Mutation p.E200K 0.19 tolerated_low_confidence(0.11) benign(0.002) TCGA-IB-7651-01 5 114956247 114956247 A C TMED7-TICAM2 Missense_Mutation p.F108C 0.18 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-IB-7651-01 5 115628343 115628343 T C COMMD10 3'UTR 0.22 TCGA-IB-7651-01 5 115813812 115813812 C T SEMA6A Missense_Mutation p.G489D 0.20 deleterious(0.05) possibly_damaging(0.69) TCGA-IB-7651-01 5 115814375 115814375 C A SEMA6A Silent p.G430G 0.15 TCGA-IB-7651-01 5 115832009 115832009 T C SEMA6A Missense_Mutation p.K94E 0.20 deleterious(0.01) benign(0.248) TCGA-IB-7651-01 5 118469685 118469685 G T DMXL1 Missense_Mutation p.S689I 0.05 tolerated(0.1) benign(0.024) TCGA-IB-7651-01 5 118484538 118484538 G T DMXL1 Missense_Mutation p.D1006Y 0.19 deleterious(0.05) benign(0.001) TCGA-IB-7651-01 5 118485814 118485814 C T DMXL1 Missense_Mutation p.T1431M 0.21 tolerated(0.09) benign(0.425) TCGA-IB-7651-01 5 118580057 118580057 T G DMXL1 Missense_Mutation p.F2882C 0.18 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 5 118582966 118582966 G A DMXL1 3'UTR 0.30 TCGA-IB-7651-01 5 118861665 118861665 C T HSD17B4 Missense_Mutation p.R568C 0.15 deleterious(0) possibly_damaging(0.862) TCGA-IB-7651-01 5 118867031 118867031 T C HSD17B4 Missense_Mutation p.V667A 0.10 tolerated(0.09) benign(0.209) TCGA-IB-7651-01 5 119800284 119800284 G A PRR16 5'UTR 0.13 TCGA-IB-7651-01 5 120022128 120022128 C A PRR16 Nonsense_Mutation p.Y190* 0.16 TCGA-IB-7651-01 5 121187676 121187676 G A FTMT Silent p.R6R 0.18 TCGA-IB-7651-01 5 121187812 121187812 G A FTMT Missense_Mutation p.A52T 0.17 tolerated(0.13) benign(0.011) TCGA-IB-7651-01 5 121188106 121188106 C T FTMT Nonsense_Mutation p.Q150* 0.12 TCGA-IB-7651-01 5 121362759 121362759 C T SRFBP1 Nonsense_Mutation p.R410* 0.20 TCGA-IB-7651-01 5 121488445 121488445 C T ZNF474 Missense_Mutation p.L254F 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 5 121785597 121785597 G A SNCAIP Silent p.Q550Q 0.20 TCGA-IB-7651-01 5 121786740 121786740 T G SNCAIP Missense_Mutation p.F733C 0.19 tolerated(0.07) probably_damaging(0.998) TCGA-IB-7651-01 5 121786784 121786784 C A SNCAIP Missense_Mutation p.P748T 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 5 121786879 121786879 G T SNCAIP Missense_Mutation p.Q779H 0.20 tolerated_low_confidence(0.31) benign(0.139) TCGA-IB-7651-01 5 122337743 122337743 C T SNX24 Intron 0.23 TCGA-IB-7651-01 5 122337829 122337829 C A SNX24 Intron 0.19 TCGA-IB-7651-01 5 122361664 122361664 C A PPIC Splice_Site p.X109_splice 0.15 TCGA-IB-7651-01 5 122718760 122718760 C T CEP120 Missense_Mutation p.A594T 0.17 deleterious(0) benign(0.279) TCGA-IB-7651-01 5 122720769 122720769 C T CEP120 Missense_Mutation p.G547R 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 122734865 122734865 A C CEP120 Missense_Mutation p.S193A 0.15 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 5 122751810 122751810 C T CEP120 Missense_Mutation p.R72H 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 1232923 1232923 C T SLC6A18 Missense_Mutation p.A120V 0.19 tolerated(0.06) benign(0.053) TCGA-IB-7651-01 5 123984658 123984658 G T ZNF608 Missense_Mutation p.S473R 0.18 deleterious(0) benign(0.146) TCGA-IB-7651-01 5 1240706 1240706 C T SLC6A18 Silent p.Y302Y 0.23 TCGA-IB-7651-01 5 1242833 1242833 G T SLC6A18 Missense_Mutation p.S329I 0.16 tolerated(0.29) benign(0.081) TCGA-IB-7651-01 5 1254618 1254618 T C TERT Missense_Mutation p.M1054V 0.21 tolerated(0.72) benign(0.002) TCGA-IB-7651-01 5 125967418 125967418 C A C5orf48 5'UTR 0.19 TCGA-IB-7651-01 5 125971724 125971724 C T C5orf48 Nonsense_Mutation p.Q66* 0.04 TCGA-IB-7651-01 5 126674903 126674903 A G MEGF10 Missense_Mutation p.T70A 0.19 tolerated(0.06) probably_damaging(0.953) TCGA-IB-7651-01 5 126758443 126758443 C T MEGF10 Missense_Mutation p.R558C 0.16 tolerated(0.44) probably_damaging(0.961) TCGA-IB-7651-01 5 126771137 126771137 C T MEGF10 Missense_Mutation p.S687F 0.20 deleterious(0) possibly_damaging(0.83) TCGA-IB-7651-01 5 126781188 126781188 G A MEGF10 Missense_Mutation p.R844Q 0.04 deleterious(0.02) benign(0.002) TCGA-IB-7651-01 5 126883688 126883688 C T PRRC1 Intron 0.21 TCGA-IB-7651-01 5 126887437 126887437 G A PRRC1 Nonsense_Mutation p.W389* 0.18 TCGA-IB-7651-01 5 127497402 127497402 T C SLC12A2 Silent p.Y842Y 0.18 TCGA-IB-7651-01 5 127595039 127595039 A C FBN2 3'UTR 0.09 TCGA-IB-7651-01 5 127622437 127622437 G A FBN2 Nonsense_Mutation p.R2329* 0.17 TCGA-IB-7651-01 5 127705025 127705025 T C FBN2 Missense_Mutation p.T700A 0.20 deleterious(0.01) possibly_damaging(0.814) TCGA-IB-7651-01 5 127872100 127872100 A G FBN2 Missense_Mutation p.I111T 0.24 deleterious(0) unknown(0) TCGA-IB-7651-01 5 1282650 1282650 C T TERT Missense_Mutation p.E555K 0.15 tolerated(0.1) benign(0.284) TCGA-IB-7651-01 5 128302184 128302184 C T SLC27A6 Silent p.F118F 0.09 TCGA-IB-7651-01 5 129019923 129019923 G A ADAMTS19 Nonsense_Mutation p.W919* 0.19 TCGA-IB-7651-01 5 129030537 129030537 A C ADAMTS19 Silent p.P975P 0.21 TCGA-IB-7651-01 5 129244046 129244046 C A CHSY3 Missense_Mutation p.S360Y 0.19 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 5 129521060 129521060 A G CHSY3 Missense_Mutation p.Y742C 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 5 130721245 130721245 C T CDC42SE2 Missense_Mutation p.R22W 0.18 deleterious(0.01) probably_damaging(0.958) TCGA-IB-7651-01 5 130726743 130726743 G A CDC42SE2 Missense_Mutation p.A72T 0.05 tolerated(0.32) benign(0.004) TCGA-IB-7651-01 5 130766994 130766994 C T RAPGEF6 Silent p.S1349S 0.20 TCGA-IB-7651-01 5 130788766 130788766 C A RAPGEF6 Missense_Mutation p.A1061S 0.16 tolerated(0.23) probably_damaging(0.997) TCGA-IB-7651-01 5 130840413 130840413 G A RAPGEF6 Missense_Mutation p.T387I 0.23 tolerated(0.27) probably_damaging(0.998) TCGA-IB-7651-01 5 130928115 130928115 G A RAPGEF6 Missense_Mutation p.S81F 0.12 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 5 131066680 131066680 T C FNIP1 Missense_Mutation p.K91E 0.18 tolerated(0.55) possibly_damaging(0.702) TCGA-IB-7651-01 5 131080272 131080272 C A FNIP1 Missense_Mutation p.E68D 0.18 tolerated(0.35) possibly_damaging(0.511) TCGA-IB-7651-01 5 131329877 131329877 C T ACSL6 Silent p.E39E 0.20 TCGA-IB-7651-01 5 131546055 131546055 C T P4HA2 Missense_Mutation p.D211N 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 5 131667484 131667484 T G SLC22A4 Missense_Mutation p.I329M 0.20 tolerated(0.16) benign(0.405) TCGA-IB-7651-01 5 131726498 131726498 C A SLC22A5 Missense_Mutation p.A390D 0.18 deleterious(0) possibly_damaging(0.836) TCGA-IB-7651-01 5 131821409 131821409 C T IRF1 Splice_Site p.X223_splice 0.14 TCGA-IB-7651-01 5 132097246 132097246 C T SEPT8 Missense_Mutation p.R289H 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 132160909 132160909 T C SHROOM1 Silent p.S308S 0.20 TCGA-IB-7651-01 5 132197621 132197621 T C GDF9 Missense_Mutation p.Y342C 0.17 deleterious(0) probably_damaging(0.971) TCGA-IB-7651-01 5 133326749 133326749 T C VDAC1 Missense_Mutation p.T72A 0.20 deleterious(0.01) benign(0.155) TCGA-IB-7651-01 5 133473798 133473798 G A TCF7 Missense_Mutation p.E164K 0.16 deleterious(0.03) benign(0.254) TCGA-IB-7651-01 5 133496781 133496781 G A SKP1 Missense_Mutation p.P71L 0.18 tolerated(0.07) possibly_damaging(0.505) TCGA-IB-7651-01 5 133533411 133533411 C A PPP2CA 3'UTR 0.25 TCGA-IB-7651-01 5 133644398 133644398 G A CDKL3 Missense_Mutation p.A301V 0.09 tolerated(0.28) possibly_damaging(0.589) TCGA-IB-7651-01 5 133896555 133896555 G A JADE2 Missense_Mutation p.E198K 0.14 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 5 133942497 133942497 A C SAR1B 3'UTR 0.19 TCGA-IB-7651-01 5 133944084 133944084 A G SAR1B Missense_Mutation p.L153S 0.23 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 5 133997159 133997159 A T SEC24A Missense_Mutation p.N150Y 0.05 deleterious_low_confidence(0) possibly_damaging(0.681) TCGA-IB-7651-01 5 134032917 134032917 T G SEC24A Nonsense_Mutation p.Y696* 0.18 TCGA-IB-7651-01 5 134039521 134039521 A G SEC24A Missense_Mutation p.N780S 0.09 deleterious(0.03) benign(0.264) TCGA-IB-7651-01 5 134154554 134154554 C T DDX46 Missense_Mutation p.A945V 0.19 tolerated(0.3) benign(0.151) TCGA-IB-7651-01 5 134154631 134154631 A G DDX46 Missense_Mutation p.T971A 0.22 deleterious(0.05) benign(0.403) TCGA-IB-7651-01 5 134191248 134191248 G A C5orf24 3'UTR 0.11 TCGA-IB-7651-01 5 134344598 134344598 C T CATSPER3 Missense_Mutation p.T248I 0.10 tolerated(0.1) probably_damaging(1) TCGA-IB-7651-01 5 134696257 134696257 C A H2AFY Missense_Mutation p.S173I 0.06 deleterious(0) possibly_damaging(0.703) TCGA-IB-7651-01 5 134785033 134785033 C A TIFAB 3'UTR 0.22 TCGA-IB-7651-01 5 134871080 134871080 C T NEUROG1 Missense_Mutation p.E101K 0.19 deleterious(0) probably_damaging(0.981) TCGA-IB-7651-01 5 135207441 135207441 T C SLC25A48 Intron 0.17 TCGA-IB-7651-01 5 135231466 135231466 A G IL9 Missense_Mutation p.C14R 0.16 deleterious(0.01) possibly_damaging(0.831) TCGA-IB-7651-01 5 135272569 135272569 T G FBXL21 RNA 0.19 TCGA-IB-7651-01 5 135276936 135276936 A T FBXL21 RNA 0.17 TCGA-IB-7651-01 5 135287026 135287026 A G LECT2 Silent p.L59L 0.20 TCGA-IB-7651-01 5 135383056 135383056 A G TGFBI Missense_Mutation p.T240A 0.19 tolerated(0.06) benign(0.039) TCGA-IB-7651-01 5 135583384 135583384 G A TRPC7 Missense_Mutation p.S540L 0.20 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 5 135692925 135692925 C T TRPC7 Missense_Mutation p.A51T 0.16 deleterious(0) possibly_damaging(0.831) TCGA-IB-7651-01 5 13700841 13700841 C T DNAH5 Missense_Mutation p.G4544D 0.15 probably_damaging(0.982) TCGA-IB-7651-01 5 137089345 137089345 C A HNRNPA0 Missense_Mutation p.K137N 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-IB-7651-01 5 137206173 137206173 G T MYOT 5'UTR 0.34 TCGA-IB-7651-01 5 137206178 137206178 G T MYOT 5'UTR 0.32 TCGA-IB-7651-01 5 137219167 137219167 G A MYOT Missense_Mutation p.G304D 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 5 137243502 137243502 G A PKD2L2 Silent p.L349L 0.18 TCGA-IB-7651-01 5 137261573 137261573 C T PKD2L2 Silent p.S542S 0.08 TCGA-IB-7651-01 5 137289150 137289150 G A FAM13B Nonsense_Mutation p.R553* 0.21 TCGA-IB-7651-01 5 137354186 137354186 C T FAM13B Missense_Mutation p.G59R 0.06 deleterious(0) probably_damaging(0.939) TCGA-IB-7651-01 5 137424756 137424756 C A WNT8A Missense_Mutation p.L170M 0.19 tolerated(0.12) possibly_damaging(0.88) TCGA-IB-7651-01 5 137451320 137451320 G T NME5 3'UTR 0.13 TCGA-IB-7651-01 5 137525388 137525388 G A CDC23 Silent p.Y519Y 0.17 TCGA-IB-7651-01 5 137525404 137525404 C T CDC23 Missense_Mutation p.R514H 0.15 tolerated(0.08) possibly_damaging(0.835) TCGA-IB-7651-01 5 137588741 137588741 T G GFRA3 Missense_Mutation p.E373D 0.21 tolerated(0.07) benign(0.05) TCGA-IB-7651-01 5 137593567 137593567 G A GFRA3 Silent p.Y182Y 0.12 TCGA-IB-7651-01 5 13766082 13766082 A G DNAH5 Intron 0.15 TCGA-IB-7651-01 5 13766267 13766267 C T DNAH5 Missense_Mutation p.A3307T 0.15 benign(0) TCGA-IB-7651-01 5 137681012 137681012 G A FAM53C Missense_Mutation p.S212N 0.17 tolerated(0.22) possibly_damaging(0.682) TCGA-IB-7651-01 5 137681135 137681135 C T FAM53C Missense_Mutation p.A253V 0.20 deleterious(0.02) benign(0.065) TCGA-IB-7651-01 5 137765648 137765648 C A KDM3B Silent p.L1629L 0.19 TCGA-IB-7651-01 5 137767233 137767233 T C KDM3B Silent p.H1730H 0.22 TCGA-IB-7651-01 5 137801568 137801568 C A EGR1 Missense_Mutation p.L40M 0.20 tolerated_low_confidence(0.89) unknown(0) TCGA-IB-7651-01 5 137802696 137802696 G T EGR1 Missense_Mutation p.Q186H 0.19 tolerated(0.13) possibly_damaging(0.522) TCGA-IB-7651-01 5 137906735 137906735 C A HSPA9 Missense_Mutation p.Q108H 0.04 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-IB-7651-01 5 138163244 138163244 G A CTNNA1 Missense_Mutation p.R300H 0.22 tolerated(0.11) benign(0.133) TCGA-IB-7651-01 5 138221925 138221925 G A CTNNA1 Missense_Mutation p.A363T 0.07 tolerated(0.59) benign(0.005) TCGA-IB-7651-01 5 138260271 138260271 G A CTNNA1 Missense_Mutation p.R540H 0.17 tolerated(0.13) benign(0.03) TCGA-IB-7651-01 5 138264950 138264950 G A CTNNA1 Missense_Mutation p.D639N 0.07 tolerated(0.05) possibly_damaging(0.491) TCGA-IB-7651-01 5 138356876 138356876 C T SIL1 Missense_Mutation p.G251S 0.16 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 5 138643992 138643992 T C MATR3 Silent p.C296C 0.19 TCGA-IB-7651-01 5 138837382 138837382 G A ECSCR Silent p.G39G 0.19 TCGA-IB-7651-01 5 138860390 138860390 G A TMEM173 Missense_Mutation p.R169W 0.19 deleterious(0) probably_damaging(0.949) TCGA-IB-7651-01 5 138860412 138860412 C T TMEM173 Nonsense_Mutation p.W161* 0.18 TCGA-IB-7651-01 5 139189208 139189208 G A PSD2 Silent p.T61T 0.17 TCGA-IB-7651-01 5 139494240 139494240 T G PURA Missense_Mutation p.D158E 0.19 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 5 139661041 139661041 T G PFDN1 Missense_Mutation p.E93A 0.22 tolerated(0.29) benign(0.077) TCGA-IB-7651-01 5 139818087 139818087 G T ANKHD1 Missense_Mutation p.D168Y 0.10 unknown(0) TCGA-IB-7651-01 5 139876204 139876204 C T ANKHD1 Missense_Mutation p.T782I 0.20 unknown(0) TCGA-IB-7651-01 5 139928966 139928966 A C EIF4EBP3 3'UTR 0.20 TCGA-IB-7651-01 5 139938323 139938323 C A APBB3 Missense_Mutation p.K443N 0.09 deleterious(0.01) possibly_damaging(0.691) TCGA-IB-7651-01 5 139942032 139942032 G A APBB3 Missense_Mutation p.A135V 0.16 tolerated(0.09) benign(0.001) TCGA-IB-7651-01 5 139943436 139943436 G A APBB3 Silent p.I38I 0.18 TCGA-IB-7651-01 5 139947164 139947164 G A SLC35A4 Missense_Mutation p.R137H 0.23 tolerated(0.08) benign(0.016) TCGA-IB-7651-01 5 139947326 139947326 T C SLC35A4 Missense_Mutation p.L191P 0.20 tolerated(0.07) benign(0.085) TCGA-IB-7651-01 5 140011662 140011662 C T CD14 Missense_Mutation p.D303N 0.18 deleterious(0.03) possibly_damaging(0.515) TCGA-IB-7651-01 5 140023463 140023463 G T TMCO6 Silent p.V339V 0.20 TCGA-IB-7651-01 5 140025074 140025074 G A NDUFA2 3'UTR 0.11 TCGA-IB-7651-01 5 140040342 140040342 G T IK Splice_Site p.X452_splice 0.16 TCGA-IB-7651-01 5 140048517 140048517 G A WDR55 Missense_Mutation p.R201Q 0.19 deleterious(0.01) probably_damaging(0.971) TCGA-IB-7651-01 5 140049193 140049193 C A WDR55 Missense_Mutation p.S369Y 0.16 deleterious(0.02) benign(0.109) TCGA-IB-7651-01 5 140056961 140056961 G A HARS Silent p.G258G 0.16 TCGA-IB-7651-01 5 140167711 140167711 G T PCDHA1 Missense_Mutation p.Q612H 0.19 tolerated_low_confidence(0.09) benign(0.091) TCGA-IB-7651-01 5 140175828 140175828 G A PCDHA2 Missense_Mutation p.A427T 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.59) TCGA-IB-7651-01 5 140175911 140175911 G A PCDHA2 Silent p.A454A 0.19 TCGA-IB-7651-01 5 140175956 140175956 G A PCDHA2 Silent p.P469P 0.20 TCGA-IB-7651-01 5 140176178 140176178 G A PCDHA2 Silent p.P543P 0.19 TCGA-IB-7651-01 5 140176294 140176294 C T PCDHA2 Missense_Mutation p.P582L 0.18 tolerated_low_confidence(0.05) benign(0.028) TCGA-IB-7651-01 5 140176734 140176734 G A PCDHA2 Missense_Mutation p.E729K 0.20 deleterious_low_confidence(0.03) benign(0.068) TCGA-IB-7651-01 5 140182308 140182308 C T PCDHA3 Missense_Mutation p.S509L 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.736) TCGA-IB-7651-01 5 140202462 140202462 A G PCDHA5 Missense_Mutation p.I368V 0.20 tolerated_low_confidence(0.26) benign(0.401) TCGA-IB-7651-01 5 140202725 140202725 G A PCDHA5 Silent p.A455A 0.04 TCGA-IB-7651-01 5 140203604 140203604 G A PCDHA5 Silent p.S748S 0.21 TCGA-IB-7651-01 5 140208640 140208640 G A PCDHA6 Missense_Mutation p.A322T 0.15 deleterious_low_confidence(0.01) probably_damaging(0.948) TCGA-IB-7651-01 5 140214937 140214937 C T PCDHA7 Silent p.V323V 0.18 TCGA-IB-7651-01 5 140221663 140221663 G A PCDHA8 Missense_Mutation p.E253K 0.10 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-IB-7651-01 5 140222350 140222350 G A PCDHA8 Missense_Mutation p.A482T 0.16 deleterious_low_confidence(0.02) benign(0.09) TCGA-IB-7651-01 5 140229419 140229419 G A PCDHA9 Missense_Mutation p.D447N 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.895) TCGA-IB-7651-01 5 140229528 140229528 A G PCDHA9 Missense_Mutation p.D483G 0.19 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-IB-7651-01 5 140229786 140229786 G A PCDHA9 Missense_Mutation p.R569Q 0.17 tolerated_low_confidence(0.5) benign(0.007) TCGA-IB-7651-01 5 140229908 140229908 G A PCDHA9 Missense_Mutation p.E610K 0.21 deleterious_low_confidence(0) benign(0.317) TCGA-IB-7651-01 5 140235697 140235697 G T PCDHA10 Missense_Mutation p.A22S 0.19 deleterious_low_confidence(0.04) benign(0.039) TCGA-IB-7651-01 5 140236636 140236636 G A PCDHA10 Missense_Mutation p.V335I 0.19 tolerated_low_confidence(0.27) benign(0.181) TCGA-IB-7651-01 5 140237244 140237244 C T PCDHA10 Silent p.R537R 0.17 TCGA-IB-7651-01 5 140237378 140237378 G A PCDHA10 Missense_Mutation p.R582Q 0.21 tolerated_low_confidence(0.13) possibly_damaging(0.834) TCGA-IB-7651-01 5 140242614 140242614 G A AC005609.1 Missense_Mutation p.A121V 0.18 tolerated_low_confidence(0.24) possibly_damaging(0.682) TCGA-IB-7651-01 5 140249981 140249981 G A PCDHA11 Silent p.S431S 0.20 TCGA-IB-7651-01 5 140255355 140255355 G A PCDHA12 Missense_Mutation p.A100T 0.04 tolerated_low_confidence(0.08) benign(0.102) TCGA-IB-7651-01 5 140256686 140256686 G A PCDHA12 Silent p.P543P 0.19 TCGA-IB-7651-01 5 140306644 140306644 G A PCDHAC1 Missense_Mutation p.R56H 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 5 1403077 1403077 G A SLC6A3 Missense_Mutation p.A576V 0.14 tolerated(0.09) benign(0.187) TCGA-IB-7651-01 5 140308328 140308328 G T PCDHAC1 Missense_Mutation p.E617D 0.18 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 5 140432001 140432001 G A PCDHB1 Missense_Mutation p.D316N 0.17 tolerated(0.19) probably_damaging(0.999) TCGA-IB-7651-01 5 140475112 140475112 G A PCDHB2 Silent p.K246K 0.15 TCGA-IB-7651-01 5 140475722 140475722 G A PCDHB2 Missense_Mutation p.A450T 0.07 deleterious_low_confidence(0.02) benign(0.271) TCGA-IB-7651-01 5 140475757 140475757 C T PCDHB2 Silent p.F461F 0.14 TCGA-IB-7651-01 5 140480177 140480177 G T PCDHB3 5'Flank 0.19 TCGA-IB-7651-01 5 140480291 140480291 T G PCDHB3 Missense_Mutation p.F20V 0.21 deleterious_low_confidence(0.04) benign(0.009) TCGA-IB-7651-01 5 140480933 140480933 G A PCDHB3 Missense_Mutation p.D234N 0.21 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-IB-7651-01 5 140481073 140481074 - T PCDHB3 Frame_Shift_Ins p.H283Sfs*4 0.16 TCGA-IB-7651-01 5 140482389 140482389 C T PCDHB3 Missense_Mutation p.A719V 0.16 deleterious_low_confidence(0.03) benign(0.107) TCGA-IB-7651-01 5 140503186 140503186 G A PCDHB4 Missense_Mutation p.G536S 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IB-7651-01 5 140503392 140503392 G T PCDHB4 Missense_Mutation p.Q604H 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.481) TCGA-IB-7651-01 5 140503686 140503686 C A PCDHB4 Missense_Mutation p.F702L 0.18 tolerated_low_confidence(0.46) benign(0.001) TCGA-IB-7651-01 5 140514937 140514937 G A PCDHB5 5'UTR 0.22 TCGA-IB-7651-01 5 140515588 140515588 A G PCDHB5 Missense_Mutation p.Y191C 0.17 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-IB-7651-01 5 140516480 140516480 G A PCDHB5 Silent p.S488S 0.19 TCGA-IB-7651-01 5 140516509 140516509 G A PCDHB5 Missense_Mutation p.R498H 0.19 deleterious_low_confidence(0.01) benign(0) TCGA-IB-7651-01 5 140517233 140517233 C T PCDHB5 Silent p.S739S 0.15 TCGA-IB-7651-01 5 140530486 140530486 C T PCDHB6 Silent p.G216G 0.17 TCGA-IB-7651-01 5 140531016 140531016 C A PCDHB6 Missense_Mutation p.P393H 0.18 deleterious(0.02) benign(0.275) TCGA-IB-7651-01 5 140531873 140531873 G T PCDHB6 Missense_Mutation p.A679S 0.18 tolerated(0.05) benign(0.075) TCGA-IB-7651-01 5 140537227 140537227 C A PCDHB17 Missense_Mutation p.L551M 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.831) TCGA-IB-7651-01 5 140553378 140553378 C T PCDHB7 Missense_Mutation p.A321V 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.785) TCGA-IB-7651-01 5 140553895 140553895 C T PCDHB7 Silent p.S493S 0.16 TCGA-IB-7651-01 5 140554076 140554076 G A PCDHB7 Missense_Mutation p.A554T 0.18 tolerated_low_confidence(0.42) benign(0.031) TCGA-IB-7651-01 5 140554408 140554408 C T PCDHB7 Silent p.D664D 0.08 TCGA-IB-7651-01 5 140554707 140554707 T A PCDHB7 Missense_Mutation p.F764Y 0.09 deleterious_low_confidence(0.02) benign(0.388) TCGA-IB-7651-01 5 140554821 140554821 C T PCDHB7 3'UTR 0.11 TCGA-IB-7651-01 5 140558420 140558420 G A PCDHB8 Missense_Mutation p.D269N 0.09 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-IB-7651-01 5 140558931 140558931 C T PCDHB8 Missense_Mutation p.T439I 0.09 deleterious_low_confidence(0.05) benign(0.064) TCGA-IB-7651-01 5 140559427 140559427 G A PCDHB8 Silent p.S604S 0.14 TCGA-IB-7651-01 5 140559455 140559455 G A PCDHB8 Missense_Mutation p.G614R 0.17 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-IB-7651-01 5 140559622 140559622 G T PCDHB8 Missense_Mutation p.Q669H 0.19 deleterious_low_confidence(0) benign(0.188) TCGA-IB-7651-01 5 140573455 140573455 G A PCDHB10 Missense_Mutation p.V444I 0.21 tolerated_low_confidence(0.18) benign(0.005) TCGA-IB-7651-01 5 140573467 140573467 G A PCDHB10 Missense_Mutation p.A448T 0.14 deleterious_low_confidence(0.02) benign(0.073) TCGA-IB-7651-01 5 140574052 140574052 C A PCDHB10 Missense_Mutation p.L643I 0.36 deleterious_low_confidence(0) possibly_damaging(0.799) TCGA-IB-7651-01 5 140581120 140581120 G A PCDHB11 Silent p.A591A 0.18 TCGA-IB-7651-01 5 140590474 140590474 C A PCDHB12 Silent p.G665G 0.18 TCGA-IB-7651-01 5 140590692 140590692 A G PCDHB12 Missense_Mutation p.D738G 0.16 deleterious_low_confidence(0.01) benign(0.32) TCGA-IB-7651-01 5 140593739 140593739 T - PCDHB13 Frame_Shift_Del p.S17Pfs*33 0.15 TCGA-IB-7651-01 5 140595695 140595695 C A PCDHB13 Missense_Mutation p.S667Y 0.16 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-IB-7651-01 5 140595716 140595716 C T PCDHB13 Missense_Mutation p.P674L 0.09 deleterious_low_confidence(0.01) benign(0.092) TCGA-IB-7651-01 5 140602960 140602960 G A PCDHB14 5'Flank 0.11 TCGA-IB-7651-01 5 140602 140602 G T PLEKHG4B Missense_Mutation p.K60N 0.09 tolerated(0.24) benign(0.036) TCGA-IB-7651-01 5 140603244 140603244 T C PCDHB14 Missense_Mutation p.V56A 0.20 tolerated_low_confidence(0.07) benign(0.042) TCGA-IB-7651-01 5 140603489 140603489 A C PCDHB14 Missense_Mutation p.I138L 0.20 deleterious_low_confidence(0.02) benign(0.173) TCGA-IB-7651-01 5 140604406 140604406 C T PCDHB14 Silent p.D443D 0.21 TCGA-IB-7651-01 5 140604652 140604652 G T PCDHB14 Missense_Mutation p.Q525H 0.10 deleterious_low_confidence(0) possibly_damaging(0.663) TCGA-IB-7651-01 5 140604719 140604719 C T PCDHB14 Missense_Mutation p.R548C 0.09 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-IB-7651-01 5 140604797 140604797 G A PCDHB14 Missense_Mutation p.E574K 0.11 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-IB-7651-01 5 140605012 140605012 G T PCDHB14 Missense_Mutation p.K645N 0.22 deleterious_low_confidence(0) benign(0.388) TCGA-IB-7651-01 5 140625193 140625193 T C PCDHB15 Missense_Mutation p.I16T 0.24 tolerated_low_confidence(0.08) benign(0.012) TCGA-IB-7651-01 5 140626928 140626928 C T PCDHB15 Silent p.G594G 0.17 TCGA-IB-7651-01 5 140627157 140627157 C A PCDHB15 Missense_Mutation p.L671M 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.731) TCGA-IB-7651-01 5 140627467 140627467 T G PCDHB15 Missense_Mutation p.I774S 0.21 tolerated_low_confidence(0.13) benign(0.007) TCGA-IB-7651-01 5 140682987 140682987 C T SLC25A2 Missense_Mutation p.S149N 0.16 tolerated(0.45) possibly_damaging(0.579) TCGA-IB-7651-01 5 140683056 140683056 G A SLC25A2 Missense_Mutation p.P126L 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 140683087 140683087 C T SLC25A2 Missense_Mutation p.A116T 0.06 deleterious(0) probably_damaging(0.985) TCGA-IB-7651-01 5 140719048 140719048 C T PCDHGA2 Silent p.Y170Y 0.09 TCGA-IB-7651-01 5 140719530 140719530 C T PCDHGA2 Missense_Mutation p.A331V 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.558) TCGA-IB-7651-01 5 140719676 140719676 G A PCDHGA2 Missense_Mutation p.A380T 0.16 deleterious_low_confidence(0) possibly_damaging(0.853) TCGA-IB-7651-01 5 140720594 140720594 G A PCDHGA2 Missense_Mutation p.D686N 0.18 tolerated_low_confidence(0.08) benign(0.009) TCGA-IB-7651-01 5 140720708 140720708 C T PCDHGA2 Silent p.L724L 0.19 TCGA-IB-7651-01 5 140724186 140724186 C A PCDHGA3 Missense_Mutation p.L196M 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IB-7651-01 5 140724569 140724569 T C PCDHGA3 Silent p.D323D 0.21 TCGA-IB-7651-01 5 140724707 140724707 C T PCDHGA3 Silent p.I369I 0.09 TCGA-IB-7651-01 5 140725464 140725464 C T PCDHGA3 Missense_Mutation p.H622Y 0.13 deleterious_low_confidence(0) possibly_damaging(0.807) TCGA-IB-7651-01 5 140730352 140730352 C A PCDHGB1 Missense_Mutation p.F175L 0.09 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 5 140731024 140731024 G A PCDHGB1 Silent p.K399K 0.19 TCGA-IB-7651-01 5 140731436 140731436 G A PCDHGB1 Missense_Mutation p.A537T 0.10 tolerated(0.09) benign(0.131) TCGA-IB-7651-01 5 140735709 140735709 C T PCDHGA4 Silent p.F314F 0.25 TCGA-IB-7651-01 5 140741634 140741634 C T PCDHGB2 Silent p.V644V 0.17 TCGA-IB-7651-01 5 140746123 140746123 C T PCDHGA5 Silent p.G742G 0.21 TCGA-IB-7651-01 5 140751489 140751489 C T PCDHGB3 Missense_Mutation p.R510W 0.19 deleterious(0) possibly_damaging(0.605) TCGA-IB-7651-01 5 140754632 140754632 C T PCDHGA6 Nonsense_Mutation p.R328* 0.16 TCGA-IB-7651-01 5 140754948 140754948 C T PCDHGA6 Missense_Mutation p.S433F 0.20 deleterious_low_confidence(0) benign(0.208) TCGA-IB-7651-01 5 140755255 140755255 C T PCDHGA6 Silent p.S535S 0.19 TCGA-IB-7651-01 5 140764319 140764319 C T PCDHGA7 Missense_Mutation p.A618V 0.05 tolerated_low_confidence(0.21) benign(0.014) TCGA-IB-7651-01 5 140767788 140767788 C T PCDHGB4 Missense_Mutation p.P113S 0.10 deleterious(0) possibly_damaging(0.799) TCGA-IB-7651-01 5 140772663 140772663 C A PCDHGA8 Missense_Mutation p.L95I 0.18 tolerated_low_confidence(0.11) possibly_damaging(0.507) TCGA-IB-7651-01 5 140774173 140774173 C T PCDHGA8 Missense_Mutation p.S598L 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.831) TCGA-IB-7651-01 5 140783171 140783171 G A PCDHGA9 Missense_Mutation p.G218S 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-IB-7651-01 5 140783390 140783390 C A PCDHGA9 Missense_Mutation p.L291I 0.17 tolerated_low_confidence(1) benign(0.045) TCGA-IB-7651-01 5 140784352 140784352 C A PCDHGA9 Silent p.A611A 0.17 TCGA-IB-7651-01 5 140784497 140784497 C T PCDHGA9 Missense_Mutation p.L660F 0.20 deleterious_low_confidence(0.04) possibly_damaging(0.613) TCGA-IB-7651-01 5 140784890 140784890 T G PCDHGA9 Missense_Mutation p.L791V 0.16 deleterious_low_confidence(0.01) benign(0.15) TCGA-IB-7651-01 5 140788005 140788005 C T PCDHGB6 Missense_Mutation p.A79V 0.21 tolerated(0.4) benign(0.06) TCGA-IB-7651-01 5 140789477 140789477 G A PCDHGB6 Missense_Mutation p.D570N 0.25 deleterious(0.02) probably_damaging(0.938) TCGA-IB-7651-01 5 140793471 140793471 G A PCDHGA10 Silent p.A243A 0.20 TCGA-IB-7651-01 5 140798805 140798805 A G PCDHGB7 Missense_Mutation p.H460R 0.16 deleterious(0.01) possibly_damaging(0.776) TCGA-IB-7651-01 5 140799067 140799067 C A PCDHGB7 Missense_Mutation p.S547R 0.17 deleterious(0.01) possibly_damaging(0.898) TCGA-IB-7651-01 5 140799113 140799113 C A PCDHGB7 Missense_Mutation p.L563M 0.18 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 5 140802413 140802413 A G PCDHGA11 Missense_Mutation p.D540G 0.18 deleterious_low_confidence(0) possibly_damaging(0.581) TCGA-IB-7651-01 5 140807247 140807247 G A PCDHGB6 Intron 0.18 TCGA-IB-7651-01 5 140807392 140807392 C T PCDHGB6 Intron 0.17 TCGA-IB-7651-01 5 140810381 140810381 C A PCDHGA12 Missense_Mutation p.L19I 0.16 tolerated_low_confidence(0.08) benign(0.237) TCGA-IB-7651-01 5 140811072 140811072 C T PCDHGA12 Missense_Mutation p.A249V 0.05 tolerated_low_confidence(1) benign(0.005) TCGA-IB-7651-01 5 140811102 140811102 C T PCDHGA12 Missense_Mutation p.T259M 0.20 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-IB-7651-01 5 140856674 140856674 C T PCDHGC3 Missense_Mutation p.P331S 0.18 tolerated(0.88) probably_damaging(0.934) TCGA-IB-7651-01 5 140867053 140867053 C A PCDHGC4 Silent p.G771G 0.17 TCGA-IB-7651-01 5 140870231 140870231 C T PCDHGC5 Missense_Mutation p.T475I 0.16 deleterious(0.03) benign(0.025) TCGA-IB-7651-01 5 140870737 140870737 G A PCDHGC5 Missense_Mutation p.V644M 0.20 deleterious(0) possibly_damaging(0.837) TCGA-IB-7651-01 5 140870861 140870861 C A PCDHGC5 Missense_Mutation p.P685H 0.17 deleterious(0.03) benign(0.293) TCGA-IB-7651-01 5 140903715 140903715 C T DIAPH1 Missense_Mutation p.R1219H 0.19 probably_damaging(0.994) TCGA-IB-7651-01 5 140913993 140913993 C A DIAPH1 Missense_Mutation p.K830N 0.18 possibly_damaging(0.688) TCGA-IB-7651-01 5 140962828 140962828 C T DIAPH1 Missense_Mutation p.A189T 0.21 unknown(0) TCGA-IB-7651-01 5 141041335 141041335 C T ARAP3 Missense_Mutation p.R1012H 0.21 deleterious(0.01) benign(0.432) TCGA-IB-7651-01 5 141046090 141046090 C T ARAP3 Missense_Mutation p.G825S 0.17 tolerated(0.12) probably_damaging(0.925) TCGA-IB-7651-01 5 141059831 141059831 A G ARAP3 Missense_Mutation p.S75P 0.19 tolerated(0.2) benign(0) TCGA-IB-7651-01 5 141059951 141059951 C T ARAP3 Missense_Mutation p.A35T 0.18 tolerated(0.07) probably_damaging(0.95) TCGA-IB-7651-01 5 141243182 141243182 G A PCDH1 Missense_Mutation p.A905V 0.20 tolerated(0.18) benign(0.004) TCGA-IB-7651-01 5 141248692 141248692 G A PCDH1 Silent p.I115I 0.17 TCGA-IB-7651-01 5 141304986 141304986 A G KIAA0141 Missense_Mutation p.H53R 0.17 tolerated(0.15) benign(0.004) TCGA-IB-7651-01 5 141312861 141312861 C T KIAA0141 Silent p.A264A 0.17 TCGA-IB-7651-01 5 141334893 141334893 G T PCDH12 Missense_Mutation p.L842M 0.15 deleterious(0.02) probably_damaging(0.972) TCGA-IB-7651-01 5 141335130 141335130 G A PCDH12 Missense_Mutation p.P763S 0.16 deleterious(0.01) possibly_damaging(0.859) TCGA-IB-7651-01 5 141336470 141336470 G T PCDH12 Missense_Mutation p.P316H 0.05 tolerated(0.64) benign(0.015) TCGA-IB-7651-01 5 141384546 141384546 G A GNPDA1 Missense_Mutation p.P182L 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 141384657 141384657 G A GNPDA1 Missense_Mutation p.A145V 0.23 deleterious(0.03) probably_damaging(0.944) TCGA-IB-7651-01 5 141384674 141384674 G A GNPDA1 Silent p.G139G 0.14 TCGA-IB-7651-01 5 1414875 1414875 C T SLC6A3 Missense_Mutation p.V363I 0.17 deleterious(0.01) probably_damaging(0.95) TCGA-IB-7651-01 5 141511891 141511891 C A NDFIP1 Missense_Mutation p.P89H 0.22 deleterious(0.02) probably_damaging(1) TCGA-IB-7651-01 5 141524156 141524156 G T NDFIP1 Nonsense_Mutation p.G195* 0.17 TCGA-IB-7651-01 5 142675037 142675037 G T NR3C1 Missense_Mutation p.L672I 0.20 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 5 142693707 142693707 G T NR3C1 Missense_Mutation p.S404Y 0.20 deleterious(0.05) possibly_damaging(0.862) TCGA-IB-7651-01 5 14336699 14336699 A G TRIO Missense_Mutation p.T637A 0.19 benign(0.015) TCGA-IB-7651-01 5 14336786 14336786 C T TRIO Nonsense_Mutation p.R666* 0.14 TCGA-IB-7651-01 5 14369491 14369491 C T TRIO Silent p.S1025S 0.15 TCGA-IB-7651-01 5 14387901 14387901 C T TRIO Nonsense_Mutation p.R1276* 0.21 TCGA-IB-7651-01 5 14406776 14406776 G A TRIO Missense_Mutation p.D1652N 0.23 possibly_damaging(0.771) TCGA-IB-7651-01 5 14482807 14482807 C T TRIO Silent p.I2194I 0.16 TCGA-IB-7651-01 5 14485348 14485348 T G TRIO Missense_Mutation p.F2276L 0.20 benign(0.006) TCGA-IB-7651-01 5 145393591 145393591 G A SH3RF2 Silent p.E342E 0.17 TCGA-IB-7651-01 5 145509704 145509704 G A LARS Silent p.Y835Y 0.14 TCGA-IB-7651-01 5 145651170 145651170 G A RBM27 Missense_Mutation p.R974H 0.16 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 5 145838663 145838663 G A TCERG1 Missense_Mutation p.A219T 0.17 tolerated_low_confidence(1) unknown(0) TCGA-IB-7651-01 5 145838887 145838887 G A TCERG1 Silent p.A293A 0.18 TCGA-IB-7651-01 5 145843122 145843122 A G TCERG1 Missense_Mutation p.T301A 0.15 tolerated(0.16) unknown(0) TCGA-IB-7651-01 5 145849225 145849225 A C TCERG1 Missense_Mutation p.K439N 0.19 deleterious(0) unknown(0) TCGA-IB-7651-01 5 145849232 145849232 G A TCERG1 Missense_Mutation p.D442N 0.20 deleterious(0) unknown(0) TCGA-IB-7651-01 5 145878172 145878172 C T TCERG1 Nonsense_Mutation p.R769* 0.21 TCGA-IB-7651-01 5 145895387 145895387 G A GPR151 Missense_Mutation p.T97M 0.20 deleterious(0.04) benign(0.117) TCGA-IB-7651-01 5 14601224 14601224 A G FAM105A Missense_Mutation p.K72R 0.15 tolerated(0.8) benign(0) TCGA-IB-7651-01 5 146703542 146703542 G A STK32A Silent p.Q114Q 0.09 TCGA-IB-7651-01 5 146997591 146997591 C A JAKMIP2 Missense_Mutation p.Q743H 0.16 deleterious(0) probably_damaging(0.984) TCGA-IB-7651-01 5 147024484 147024484 C T JAKMIP2 Missense_Mutation p.D338N 0.20 deleterious(0.02) probably_damaging(0.988) TCGA-IB-7651-01 5 147030054 147030054 C T JAKMIP2 Silent p.E228E 0.17 TCGA-IB-7651-01 5 147040937 147040937 C T JAKMIP2 Silent p.T67T 0.18 TCGA-IB-7651-01 5 14711296 14711296 G A ANKH 3'UTR 0.09 TCGA-IB-7651-01 5 147486674 147486674 T C SPINK5 Silent p.R518R 0.21 TCGA-IB-7651-01 5 147493998 147493998 G A SPINK5 Missense_Mutation p.R654H 0.19 deleterious(0) probably_damaging(0.979) TCGA-IB-7651-01 5 147719372 147719372 C T SPINK9 3'UTR 0.22 TCGA-IB-7651-01 5 147781654 147781654 G A FBXO38 Silent p.E124E 0.17 TCGA-IB-7651-01 5 147820025 147820025 G A FBXO38 Missense_Mutation p.R995Q 0.18 tolerated(0.06) probably_damaging(0.988) TCGA-IB-7651-01 5 147845485 147845485 G A HTR4 Silent p.G360G 0.16 TCGA-IB-7651-01 5 147862718 147862718 G T HTR4 3'UTR 0.19 TCGA-IB-7651-01 5 147862755 147862755 G A HTR4 3'UTR 0.21 TCGA-IB-7651-01 5 147863911 147863911 C T HTR4 Missense_Mutation p.A370T 0.19 tolerated_low_confidence(0.86) benign(0) TCGA-IB-7651-01 5 147929756 147929756 C A HTR4 Missense_Mutation p.M32I 0.19 tolerated(0.52) benign(0.358) TCGA-IB-7651-01 5 148406207 148406207 A C SH3TC2 Missense_Mutation p.L994R 0.20 deleterious(0) probably_damaging(0.95) TCGA-IB-7651-01 5 148422323 148422323 C T SH3TC2 Missense_Mutation p.E155K 0.09 tolerated(0.13) benign(0.134) TCGA-IB-7651-01 5 148619346 148619346 C T ABLIM3 Missense_Mutation p.R367W 0.17 deleterious(0.01) possibly_damaging(0.886) TCGA-IB-7651-01 5 148627370 148627370 T G ABLIM3 Missense_Mutation p.I526S 0.09 deleterious(0) possibly_damaging(0.53) TCGA-IB-7651-01 5 148637959 148637959 C T ABLIM3 Silent p.L682L 0.20 TCGA-IB-7651-01 5 148679100 148679100 C T AFAP1L1 Silent p.T15T 0.13 TCGA-IB-7651-01 5 148687146 148687146 G A AFAP1L1 Silent p.Q239Q 0.21 TCGA-IB-7651-01 5 148742307 148742307 C T PCYOX1L Missense_Mutation p.R66C 0.08 deleterious(0) probably_damaging(0.984) TCGA-IB-7651-01 5 148747604 148747604 G T PCYOX1L Missense_Mutation p.S291I 0.04 tolerated(0.19) benign(0.202) TCGA-IB-7651-01 5 148996246 148996246 C T ARHGEF37 Missense_Mutation p.A192V 0.15 deleterious(0.01) possibly_damaging(0.893) TCGA-IB-7651-01 5 148998539 148998539 C T ARHGEF37 Silent p.F276F 0.20 TCGA-IB-7651-01 5 149006811 149006811 G A ARHGEF37 Missense_Mutation p.G546D 0.17 tolerated(0.5) benign(0.01) TCGA-IB-7651-01 5 149210396 149210396 G A PPARGC1B Missense_Mutation p.A178T 0.18 tolerated(0.37) benign(0.006) TCGA-IB-7651-01 5 149212986 149212986 G A PPARGC1B Silent p.E450E 0.19 TCGA-IB-7651-01 5 149216066 149216066 G A PPARGC1B Missense_Mutation p.R683H 0.15 deleterious(0.03) benign(0.099) TCGA-IB-7651-01 5 149216334 149216334 G A PPARGC1B Silent p.E772E 0.16 TCGA-IB-7651-01 5 149227185 149227185 G A PPARGC1B 3'UTR 0.16 TCGA-IB-7651-01 5 149310693 149310693 A C PDE6A Silent p.L252L 0.15 TCGA-IB-7651-01 5 149374485 149374485 A C TIGD6 Missense_Mutation p.L476R 0.17 deleterious(0.01) probably_damaging(0.956) TCGA-IB-7651-01 5 149439327 149439327 C T CSF1R Missense_Mutation p.G690S 0.17 tolerated(0.2) possibly_damaging(0.833) TCGA-IB-7651-01 5 149500528 149500528 C A PDGFRB Missense_Mutation p.G837C 0.20 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 5 149512485 149512485 G A PDGFRB Silent p.L319L 0.20 TCGA-IB-7651-01 5 149624837 149624837 G T CAMK2A Intron 0.18 TCGA-IB-7651-01 5 149677669 149677669 G T ARSI Missense_Mutation p.A273D 0.19 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 5 149786471 149786471 C T CD74 Silent p.A117A 0.22 TCGA-IB-7651-01 5 149927843 149927843 G A NDST1 Missense_Mutation p.G737S 0.17 tolerated(0.42) benign(0.037) TCGA-IB-7651-01 5 149929267 149929267 C T NDST1 Missense_Mutation p.R782C 0.21 deleterious(0) probably_damaging(0.961) TCGA-IB-7651-01 5 150027809 150027809 G A SYNPO Missense_Mutation p.S235N 0.20 tolerated(0.31) benign(0.124) TCGA-IB-7651-01 5 150052037 150052037 G T MYOZ3 Missense_Mutation p.S187I 0.17 tolerated(0.39) benign(0.018) TCGA-IB-7651-01 5 150056304 150056304 G A MYOZ3 Missense_Mutation p.G208D 0.17 tolerated(0.97) benign(0.002) TCGA-IB-7651-01 5 150071297 150071297 G A RBM22 3'UTR 0.19 TCGA-IB-7651-01 5 150071373 150071373 G A RBM22 Silent p.H401H 0.17 TCGA-IB-7651-01 5 150076139 150076139 G A RBM22 Silent p.F167F 0.08 TCGA-IB-7651-01 5 150078092 150078092 G A RBM22 Silent p.V80V 0.04 TCGA-IB-7651-01 5 150136014 150136015 - T DCTN4 Frame_Shift_Ins p.N57Kfs*6 0.11 TCGA-IB-7651-01 5 150276091 150276091 C A ZNF300 Missense_Mutation p.G253V 0.19 tolerated(0.08) possibly_damaging(0.89) TCGA-IB-7651-01 5 150277639 150277639 C T ZNF300 Missense_Mutation p.A100T 0.18 tolerated(0.45) benign(0.006) TCGA-IB-7651-01 5 150321825 150321825 C T ZNF300P1 RNA 0.09 TCGA-IB-7651-01 5 150497386 150497386 G A ANXA6 Missense_Mutation p.S484F 0.19 deleterious(0) possibly_damaging(0.898) TCGA-IB-7651-01 5 150498908 150498908 G A ANXA6 Missense_Mutation p.T464I 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 150581210 150581210 C T CCDC69 Missense_Mutation p.R55Q 0.20 tolerated(1) benign(0.001) TCGA-IB-7651-01 5 150664259 150664259 G T SLC36A3 Missense_Mutation p.P282H 0.09 deleterious(0.03) benign(0.132) TCGA-IB-7651-01 5 150726957 150726957 G A SLC36A2 Missense_Mutation p.S22L 0.10 deleterious(0.04) benign(0.124) TCGA-IB-7651-01 5 150853243 150853243 G T SLC36A1 Missense_Mutation p.D245Y 0.18 tolerated(0.18) benign(0.021) TCGA-IB-7651-01 5 150867888 150867888 G T SLC36A1 3'UTR 0.13 TCGA-IB-7651-01 5 150887020 150887020 C T FAT2 Missense_Mutation p.R4071H 0.17 benign(0.01) TCGA-IB-7651-01 5 150920160 150920160 C T FAT2 Missense_Mutation p.D3003N 0.14 probably_damaging(1) TCGA-IB-7651-01 5 150925264 150925264 C A FAT2 Missense_Mutation p.E1808D 0.22 probably_damaging(0.996) TCGA-IB-7651-01 5 150925761 150925761 G A FAT2 Silent p.L1643L 0.06 TCGA-IB-7651-01 5 150930195 150930195 A C FAT2 Missense_Mutation p.L1512V 0.23 probably_damaging(0.982) TCGA-IB-7651-01 5 150930355 150930355 G T FAT2 Silent p.P1458P 0.17 TCGA-IB-7651-01 5 150934003 150934003 C T FAT2 Missense_Mutation p.E1289K 0.20 benign(0.035) TCGA-IB-7651-01 5 150945633 150945633 G A FAT2 Silent p.L954L 0.12 TCGA-IB-7651-01 5 150947261 150947261 C T FAT2 Missense_Mutation p.R411Q 0.23 benign(0.012) TCGA-IB-7651-01 5 150947892 150947892 C T FAT2 Missense_Mutation p.G201S 0.11 probably_damaging(1) TCGA-IB-7651-01 5 150948345 150948345 T C FAT2 Missense_Mutation p.T50A 0.19 probably_damaging(0.916) TCGA-IB-7651-01 5 151166218 151166218 C T G3BP1 Missense_Mutation p.R13W 0.09 tolerated(0.06) benign(0.003) TCGA-IB-7651-01 5 151175110 151175110 A C G3BP1 Silent p.G171G 0.18 TCGA-IB-7651-01 5 151183461 151183461 G T G3BP1 Missense_Mutation p.G404C 0.07 deleterious(0.03) benign(0.227) TCGA-IB-7651-01 5 151771975 151771975 A C NMUR2 Missense_Mutation p.I342S 0.20 deleterious(0.02) possibly_damaging(0.556) TCGA-IB-7651-01 5 151784223 151784223 G A NMUR2 Missense_Mutation p.P151L 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 153056565 153056565 G A GRIA1 Silent p.A301A 0.23 TCGA-IB-7651-01 5 153433216 153433216 A G MFAP3 Silent p.G344G 0.21 TCGA-IB-7651-01 5 153709140 153709140 G A GALNT10 Missense_Mutation p.S137N 0.20 tolerated(0.52) benign(0) TCGA-IB-7651-01 5 154172210 154172210 G A LARP1 Missense_Mutation p.R121H 0.18 deleterious(0.01) probably_damaging(0.955) TCGA-IB-7651-01 5 154174798 154174798 T C LARP1 Silent p.A355A 0.23 TCGA-IB-7651-01 5 154179551 154179551 G A LARP1 Silent p.E478E 0.20 TCGA-IB-7651-01 5 154267675 154267675 T C GEMIN5 3'UTR 0.22 TCGA-IB-7651-01 5 154393573 154393573 G A KIF4B Missense_Mutation p.D52N 0.17 tolerated(0.15) probably_damaging(1) TCGA-IB-7651-01 5 154393593 154393593 T C KIF4B Silent p.C58C 0.17 TCGA-IB-7651-01 5 154395412 154395412 A G KIF4B Missense_Mutation p.K665E 0.17 deleterious(0) possibly_damaging(0.78) TCGA-IB-7651-01 5 154395477 154395477 G A KIF4B Silent p.L686L 0.21 TCGA-IB-7651-01 5 15500584 15500584 G T FBXL7 5'UTR 0.11 TCGA-IB-7651-01 5 155756548 155756548 A C SGCD 5'UTR 0.19 TCGA-IB-7651-01 5 156381524 156381524 T G TIMD4 Missense_Mutation p.N101T 0.18 deleterious(0) probably_damaging(0.981) TCGA-IB-7651-01 5 156479385 156479385 C T HAVCR1 Silent p.Q220Q 0.08 TCGA-IB-7651-01 5 156589472 156589472 T G FAM71B Missense_Mutation p.T602P 0.10 deleterious(0.02) possibly_damaging(0.462) TCGA-IB-7651-01 5 156590053 156590053 A G FAM71B Missense_Mutation p.M408T 0.18 tolerated(0.13) possibly_damaging(0.811) TCGA-IB-7651-01 5 156635904 156635904 A C ITK Missense_Mutation p.K48T 0.14 deleterious(0) probably_damaging(0.93) TCGA-IB-7651-01 5 156741989 156741989 C A CYFIP2 Missense_Mutation p.L389M 0.19 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 5 156746841 156746841 G A CYFIP2 Silent p.R450R 0.05 TCGA-IB-7651-01 5 156746871 156746871 C T CYFIP2 Silent p.F460F 0.16 TCGA-IB-7651-01 5 156747679 156747679 C T CYFIP2 Nonsense_Mutation p.R488* 0.18 TCGA-IB-7651-01 5 156770491 156770491 C T FNDC9 Silent p.S18S 0.18 TCGA-IB-7651-01 5 156890321 156890321 C A NIPAL4 Missense_Mutation p.A148D 0.13 tolerated(0.5) benign(0.029) TCGA-IB-7651-01 5 156908832 156908832 C A ADAM19 Missense_Mutation p.Q890H 0.23 tolerated(0.17) benign(0.413) TCGA-IB-7651-01 5 156945848 156945848 C T ADAM19 Missense_Mutation p.V217M 0.19 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 5 157065339 157065339 C T SOX30 Silent p.Q593Q 0.14 TCGA-IB-7651-01 5 157073693 157073693 A G SOX30 Missense_Mutation p.Y447H 0.19 deleterious(0.04) probably_damaging(0.993) TCGA-IB-7651-01 5 157161741 157161741 C T THG1L Nonsense_Mutation p.R176* 0.17 TCGA-IB-7651-01 5 157178476 157178476 T G LSM11 Missense_Mutation p.F176C 0.18 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 5 158223401 158223401 G A EBF1 Silent p.F287F 0.21 TCGA-IB-7651-01 5 158696032 158696032 G T UBLCP1 Nonsense_Mutation p.G37* 0.19 TCGA-IB-7651-01 5 158711927 158711927 G T UBLCP1 Missense_Mutation p.K315N 0.12 tolerated(0.06) benign(0.056) TCGA-IB-7651-01 5 158711983 158711983 G T UBLCP1 3'UTR 0.14 TCGA-IB-7651-01 5 158712060 158712060 T C UBLCP1 3'UTR 0.22 TCGA-IB-7651-01 5 158753736 158753736 G A IL12B Missense_Mutation p.P19S 0.14 tolerated(0.22) benign(0.064) TCGA-IB-7651-01 5 15936593 15936593 G T FBXL7 Silent p.R258R 0.14 TCGA-IB-7651-01 5 15936764 15936764 C T FBXL7 Silent p.G315G 0.15 TCGA-IB-7651-01 5 159437513 159437513 C T TTC1 5'UTR 0.18 TCGA-IB-7651-01 5 159546002 159546002 C T PWWP2A Missense_Mutation p.E132K 0.09 tolerated_low_confidence(0.27) benign(0.04) TCGA-IB-7651-01 5 159546030 159546030 C T PWWP2A Silent p.E122E 0.14 TCGA-IB-7651-01 5 159738895 159738895 G A CCNJL Silent p.A12A 0.16 TCGA-IB-7651-01 5 159821708 159821708 G A C5orf54 Missense_Mutation p.P264S 0.19 deleterious(0.01) possibly_damaging(0.834) TCGA-IB-7651-01 5 159834607 159834607 G A SLU7 Missense_Mutation p.A334V 0.13 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 5 159835352 159835352 C T SLU7 Missense_Mutation p.R268Q 0.14 deleterious(0) probably_damaging(0.985) TCGA-IB-7651-01 5 160047706 160047706 G A ATP10B Silent p.G688G 0.19 TCGA-IB-7651-01 5 160063213 160063213 G T ATP10B Missense_Mutation p.F368L 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 5 160721349 160721349 G A GABRB2 Silent p.D426D 0.20 TCGA-IB-7651-01 5 160757956 160757956 G A GABRB2 Silent p.R337R 0.18 TCGA-IB-7651-01 5 16177968 16177968 C T MARCH11 Missense_Mutation p.R187Q 0.16 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 5 162891738 162891738 A T HMMR Missense_Mutation p.Q52L 0.21 tolerated(0.11) possibly_damaging(0.843) TCGA-IB-7651-01 5 16668425 16668425 G A MYO10 Silent p.I2012I 0.13 TCGA-IB-7651-01 5 16671030 16671030 G T MYO10 Missense_Mutation p.L1830I 0.15 tolerated(0.06) probably_damaging(0.994) TCGA-IB-7651-01 5 16673839 16673839 G A MYO10 Silent p.G1708G 0.17 TCGA-IB-7651-01 5 16689992 16689992 G A MYO10 Silent p.I1279I 0.14 TCGA-IB-7651-01 5 16701471 16701471 G A MYO10 Silent p.S1011S 0.12 TCGA-IB-7651-01 5 167645592 167645592 C T TENM2 Missense_Mutation p.R1566W 0.18 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 5 16766233 16766233 A G MYO10 Missense_Mutation p.F379L 0.18 deleterious(0.05) benign(0.008) TCGA-IB-7651-01 5 167674181 167674181 C A TENM2 Missense_Mutation p.F2079L 0.21 deleterious(0.02) probably_damaging(0.995) TCGA-IB-7651-01 5 167674992 167674992 C A TENM2 Missense_Mutation p.L2350I 0.19 deleterious(0.01) possibly_damaging(0.799) TCGA-IB-7651-01 5 167812302 167812302 G A WWC1 Missense_Mutation p.A106T 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 5 167833206 167833206 C T WWC1 Silent p.I198I 0.17 TCGA-IB-7651-01 5 167850797 167850797 G A WWC1 Missense_Mutation p.A512T 0.16 tolerated(0.75) benign(0.007) TCGA-IB-7651-01 5 167882444 167882444 C A WWC1 Silent p.S914S 0.19 TCGA-IB-7651-01 5 167891807 167891807 C T WWC1 Missense_Mutation p.A1003V 0.14 tolerated(0.15) benign(0.275) TCGA-IB-7651-01 5 167922434 167922434 G A RARS Missense_Mutation p.V232M 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 167929034 167929034 C T RARS Silent p.D327D 0.06 TCGA-IB-7651-01 5 167956993 167956993 G T FBLL1 Missense_Mutation p.G162C 0.25 tolerated(0.18) benign(0.085) TCGA-IB-7651-01 5 168112785 168112785 G A SLIT3 Silent p.C1154C 0.17 TCGA-IB-7651-01 5 168139347 168139347 G T SLIT3 Silent p.G832G 0.08 TCGA-IB-7651-01 5 168244398 168244398 G A SLIT3 Missense_Mutation p.R234W 0.19 deleterious(0.02) probably_damaging(0.958) TCGA-IB-7651-01 5 168310296 168310296 G T SLIT3 Missense_Mutation p.F153L 0.16 tolerated(0.21) probably_damaging(0.93) TCGA-IB-7651-01 5 168690660 168690660 G A SLIT3 Intron 0.17 TCGA-IB-7651-01 5 169116331 169116331 C A DOCK2 Silent p.V279V 0.18 TCGA-IB-7651-01 5 169138991 169138991 G A DOCK2 Missense_Mutation p.R512Q 0.17 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 5 169230145 169230145 C A DOCK2 Missense_Mutation p.L880M 0.19 tolerated(0.24) benign(0.139) TCGA-IB-7651-01 5 169474616 169474616 C T DOCK2 Missense_Mutation p.R1357W 0.16 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 5 169503008 169503008 C T DOCK2 Nonsense_Mutation p.R1596* 0.17 TCGA-IB-7651-01 5 169533265 169533265 C T FOXI1 Missense_Mutation p.L102F 0.12 tolerated(0.9) possibly_damaging(0.747) TCGA-IB-7651-01 5 170338133 170338133 G T RANBP17 Missense_Mutation p.R252I 0.14 deleterious(0) possibly_damaging(0.627) TCGA-IB-7651-01 5 170345732 170345732 G T RANBP17 Missense_Mutation p.G324C 0.07 deleterious(0.01) benign(0.008) TCGA-IB-7651-01 5 170632528 170632528 C T RANBP17 Missense_Mutation p.R715C 0.17 deleterious(0.02) probably_damaging(0.993) TCGA-IB-7651-01 5 170668042 170668042 T C RANBP17 Missense_Mutation p.Y845H 0.21 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 5 171305026 171305026 A G FBXW11 Silent p.D299D 0.24 TCGA-IB-7651-01 5 171327098 171327098 C T FBXW11 Missense_Mutation p.G127D 0.18 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-IB-7651-01 5 171532714 171532714 C A STK10 Missense_Mutation p.K272N 0.19 deleterious(0.01) benign(0.426) TCGA-IB-7651-01 5 171638856 171638856 T C UBTD2 Missense_Mutation p.N228S 0.20 tolerated(0.33) benign(0.007) TCGA-IB-7651-01 5 171638977 171638977 C T UBTD2 Missense_Mutation p.E188K 0.18 tolerated(0.17) benign(0.134) TCGA-IB-7651-01 5 171821594 171821594 G A SH3PXD2B Silent p.R94R 0.13 TCGA-IB-7651-01 5 17275470 17275470 G A BASP1 Missense_Mutation p.A49T 0.16 tolerated(1) unknown(0) TCGA-IB-7651-01 5 173316694 173316694 G A CPEB4 5'UTR 0.16 TCGA-IB-7651-01 5 173316988 173316988 A G CPEB4 Silent p.Q84Q 0.09 TCGA-IB-7651-01 5 173378900 173378900 A C CPEB4 Missense_Mutation p.K580T 0.09 deleterious(0) probably_damaging(0.96) TCGA-IB-7651-01 5 173380379 173380379 A C CPEB4 Intron 0.23 TCGA-IB-7651-01 5 173473797 173473797 C T NSG2 Silent p.T13T 0.07 TCGA-IB-7651-01 5 17353957 17353957 G T CTD-2139B15.2 5'Flank 0.31 TCGA-IB-7651-01 5 17354246 17354246 G A CTD-2139B15.2 RNA 0.10 TCGA-IB-7651-01 5 17354438 17354438 G T CTD-2139B15.2 RNA 0.38 TCGA-IB-7651-01 5 174869427 174869427 G A DRD1 Missense_Mutation p.R226W 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 174869930 174869930 A G DRD1 Missense_Mutation p.V58A 0.29 deleterious(0.03) probably_damaging(0.997) TCGA-IB-7651-01 5 174919199 174919199 A C SFXN1 Silent p.V31V 0.22 TCGA-IB-7651-01 5 174937166 174937166 C T SFXN1 Silent p.V130V 0.28 TCGA-IB-7651-01 5 174940559 174940559 C T SFXN1 Silent p.V230V 0.27 TCGA-IB-7651-01 5 174940564 174940564 C T SFXN1 Missense_Mutation p.S232F 0.16 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 5 175110172 175110172 A G HRH2 5'UTR 0.07 TCGA-IB-7651-01 5 175110875 175110875 C A HRH2 Silent p.A213A 0.07 TCGA-IB-7651-01 5 175772213 175772213 G A SIMC1 Missense_Mutation p.R380Q 0.28 tolerated(0.09) probably_damaging(0.998) TCGA-IB-7651-01 5 175798762 175798762 G A ARL10 Missense_Mutation p.R200Q 0.27 tolerated(0.54) benign(0.013) TCGA-IB-7651-01 5 175816508 175816508 C A HIGD2A 3'UTR 0.28 TCGA-IB-7651-01 5 175843361 175843361 C T CLTB Missense_Mutation p.A2T 0.22 deleterious(0) unknown(0) TCGA-IB-7651-01 5 175913437 175913437 A G FAF2 Missense_Mutation p.N72D 0.16 tolerated(0.26) benign(0.157) TCGA-IB-7651-01 5 175921013 175921013 C A FAF2 Missense_Mutation p.A166D 0.31 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 5 176004468 176004468 G T CDHR2 Missense_Mutation p.E421D 0.27 tolerated(0.27) benign(0.008) TCGA-IB-7651-01 5 176005098 176005098 T C CDHR2 Splice_Site p.X525_splice 0.24 TCGA-IB-7651-01 5 176016537 176016537 C T CDHR2 Silent p.T1042T 0.16 TCGA-IB-7651-01 5 176053475 176053475 G A SNCB Missense_Mutation p.A69V 0.19 deleterious(0.01) probably_damaging(0.965) TCGA-IB-7651-01 5 176083112 176083112 G A TSPAN17 Missense_Mutation p.V206I 0.27 tolerated(0.28) benign(0.006) TCGA-IB-7651-01 5 176084806 176084806 A C TSPAN17 3'UTR 0.08 TCGA-IB-7651-01 5 176304689 176304689 C T UNC5A Silent p.C540C 0.25 TCGA-IB-7651-01 5 176306485 176306485 G A UNC5A Missense_Mutation p.D787N 0.05 tolerated(0.18) possibly_damaging(0.552) TCGA-IB-7651-01 5 176308126 176308126 G A HK3 Missense_Mutation p.A907V 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-IB-7651-01 5 176317669 176317669 G A HK3 Silent p.V199V 0.14 TCGA-IB-7651-01 5 176318184 176318184 C A HK3 Missense_Mutation p.D90Y 0.27 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 5 176477892 176477892 G A ZNF346 Missense_Mutation p.A220T 0.20 tolerated(0.08) benign(0.347) TCGA-IB-7651-01 5 176518013 176518013 C T FGFR4 Missense_Mutation p.R171C 0.31 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 5 176638654 176638654 C A NSD1 Missense_Mutation p.P1085H 0.27 tolerated_low_confidence(0.12) benign(0.002) TCGA-IB-7651-01 5 176639155 176639155 G A NSD1 Missense_Mutation p.G1252E 0.07 tolerated_low_confidence(0.13) benign(0.031) TCGA-IB-7651-01 5 176722104 176722104 C T NSD1 Nonsense_Mutation p.Q2579* 0.25 TCGA-IB-7651-01 5 176729783 176729783 G A RAB24 Missense_Mutation p.R79W 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 176764242 176764242 C T LMAN2 Missense_Mutation p.D229N 0.14 deleterious(0.04) probably_damaging(0.936) TCGA-IB-7651-01 5 176778195 176778195 C T LMAN2 Silent p.E98E 0.09 TCGA-IB-7651-01 5 176785034 176785034 G T RGS14 Silent p.G3G 0.13 TCGA-IB-7651-01 5 176795177 176795177 C T RGS14 Silent p.N253N 0.26 TCGA-IB-7651-01 5 176813105 176813105 C T SLC34A1 Missense_Mutation p.A76V 0.28 tolerated(0.39) benign(0.001) TCGA-IB-7651-01 5 176813505 176813505 C T SLC34A1 Missense_Mutation p.T157I 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 5 176820710 176820710 T C SLC34A1 Missense_Mutation p.S318P 0.05 tolerated(0.42) benign(0) TCGA-IB-7651-01 5 176830605 176830605 C A F12 Missense_Mutation p.D422Y 0.24 deleterious(0.01) benign(0.436) TCGA-IB-7651-01 5 176859018 176859018 C T GRK6 Silent p.C57C 0.24 TCGA-IB-7651-01 5 176860543 176860543 G A GRK6 Missense_Mutation p.A202T 0.33 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 5 176867757 176867757 G A GRK6 Silent p.K487K 0.22 TCGA-IB-7651-01 5 176885542 176885542 G A DBN1 Silent p.V433V 0.14 TCGA-IB-7651-01 5 176940011 176940011 C T DDX41 Splice_Site p.X434_splice 0.08 TCGA-IB-7651-01 5 176951655 176951655 G A FAM193B Silent p.S609S 0.06 TCGA-IB-7651-01 5 177034312 177034312 G A B4GALT7 Silent p.R141R 0.22 TCGA-IB-7651-01 5 177309518 177309518 C T RP11-423H2.1 RNA 0.08 TCGA-IB-7651-01 5 177309711 177309711 G T RP11-423H2.1 RNA 0.16 TCGA-IB-7651-01 5 177419780 177419780 C T PROP1 Missense_Mutation p.G204D 0.29 deleterious(0) benign(0.164) TCGA-IB-7651-01 5 177421242 177421242 C T PROP1 Silent p.R69R 0.17 TCGA-IB-7651-01 5 177462101 177462101 C T FAM153C 5'UTR 0.09 TCGA-IB-7651-01 5 177546611 177546611 C T N4BP3 Silent p.G9G 0.21 TCGA-IB-7651-01 5 177547263 177547263 G T N4BP3 Missense_Mutation p.G139C 0.10 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 177547450 177547450 C A N4BP3 Missense_Mutation p.P201H 0.24 deleterious(0.01) possibly_damaging(0.554) TCGA-IB-7651-01 5 177569660 177569660 G A RMND5B Silent p.V72V 0.27 TCGA-IB-7651-01 5 178030540 178030540 T G CLK4 3'UTR 0.31 TCGA-IB-7651-01 5 178050414 178050414 G A CLK4 Missense_Mutation p.R2W 0.09 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-IB-7651-01 5 178139061 178139061 C A ZNF354A Nonstop_Mutation p.*606Yext*7 0.18 TCGA-IB-7651-01 5 178139568 178139568 A C ZNF354A Missense_Mutation p.F437L 0.17 tolerated(0.96) benign(0.004) TCGA-IB-7651-01 5 178310195 178310195 T C ZNF354B Silent p.L248L 0.25 TCGA-IB-7651-01 5 178310832 178310832 A C ZNF354B Missense_Mutation p.H460P 0.23 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 178339703 178339703 G T ZFP2 5'UTR 0.10 TCGA-IB-7651-01 5 178358719 178358719 T C ZFP2 Silent p.C135C 0.24 TCGA-IB-7651-01 5 178409946 178409946 G T GRM6 Missense_Mutation p.P801T 0.16 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 5 178413655 178413655 C T GRM6 Missense_Mutation p.V534I 0.24 tolerated(0.63) possibly_damaging(0.523) TCGA-IB-7651-01 5 178413684 178413684 G T GRM6 Missense_Mutation p.P524Q 0.24 tolerated(0.08) possibly_damaging(0.895) TCGA-IB-7651-01 5 178506423 178506423 C T ZNF354C Silent p.C330C 0.15 TCGA-IB-7651-01 5 178552119 178552119 C T ADAMTS2 Missense_Mutation p.R938H 0.06 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 178553085 178553085 C T ADAMTS2 Silent p.K888K 0.15 TCGA-IB-7651-01 5 178987118 178987118 G T RUFY1 Missense_Mutation p.G135C 0.25 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 5 179044072 179044072 C T HNRNPH1 Missense_Mutation p.G366E 0.23 tolerated(0.1) benign(0.383) TCGA-IB-7651-01 5 179192579 179192579 C T MAML1 Missense_Mutation p.R190C 0.31 tolerated(0.07) benign(0) TCGA-IB-7651-01 5 179193073 179193073 C A MAML1 Silent p.P354P 0.17 TCGA-IB-7651-01 5 179193167 179193167 G A MAML1 Missense_Mutation p.G386S 0.11 deleterious(0.03) possibly_damaging(0.874) TCGA-IB-7651-01 5 179201461 179201461 C T MAML1 Silent p.S878S 0.26 TCGA-IB-7651-01 5 179201852 179201852 T C MAML1 Silent p.L1009L 0.16 TCGA-IB-7651-01 5 179227252 179227252 T C MGAT4B Missense_Mutation p.T258A 0.04 deleterious(0.01) possibly_damaging(0.53) TCGA-IB-7651-01 5 179260104 179260104 C A SQSTM1 Missense_Mutation p.S276Y 0.25 tolerated(0.22) benign(0.015) TCGA-IB-7651-01 5 179260107 179260107 G T SQSTM1 Missense_Mutation p.S277I 0.14 tolerated(0.06) benign(0.058) TCGA-IB-7651-01 5 179264406 179264406 G A C5orf45 Silent p.F339F 0.25 TCGA-IB-7651-01 5 179269014 179269014 G A C5orf45 Silent p.D114D 0.18 TCGA-IB-7651-01 5 179275064 179275064 A C C5orf45 Silent p.A43A 0.27 TCGA-IB-7651-01 5 179291064 179291064 T C TBC1D9B Missense_Mutation p.D1046G 0.26 tolerated(0.07) benign(0) TCGA-IB-7651-01 5 179302094 179302094 C A TBC1D9B Missense_Mutation p.S665I 0.24 deleterious(0) possibly_damaging(0.493) TCGA-IB-7651-01 5 179545622 179545622 C T RASGEF1C Missense_Mutation p.S357N 0.18 tolerated(0.07) benign(0.151) TCGA-IB-7651-01 5 179666973 179666973 A T MAPK9 Silent p.I337I 0.17 TCGA-IB-7651-01 5 179676059 179676059 C T MAPK9 Missense_Mutation p.C177Y 0.24 deleterious(0.03) benign(0.185) TCGA-IB-7651-01 5 179743450 179743450 A C GFPT2 Silent p.V388V 0.15 TCGA-IB-7651-01 5 179758500 179758500 A C GFPT2 Missense_Mutation p.F132V 0.21 tolerated(0.39) benign(0.023) TCGA-IB-7651-01 5 180038401 180038401 C T FLT4 Missense_Mutation p.A1206T 0.08 tolerated(0.25) benign(0.341) TCGA-IB-7651-01 5 180046743 180046743 C T FLT4 Missense_Mutation p.G857R 0.22 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 180055887 180055887 G A FLT4 Silent p.F366F 0.17 TCGA-IB-7651-01 5 180056812 180056812 G T FLT4 Missense_Mutation p.L234M 0.25 tolerated(0.13) probably_damaging(0.995) TCGA-IB-7651-01 5 180057602 180057602 G A FLT4 Missense_Mutation p.A118V 0.29 tolerated(0.19) benign(0.261) TCGA-IB-7651-01 5 180218780 180218780 C T MGAT1 Missense_Mutation p.A398T 0.27 possibly_damaging(0.657) TCGA-IB-7651-01 5 1802444 1802444 G A NDUFS6 Missense_Mutation p.D48N 0.18 deleterious(0.05) benign(0.005) TCGA-IB-7651-01 5 180377192 180377192 G A BTNL8 Missense_Mutation p.G384E 0.27 tolerated(1) benign(0.003) TCGA-IB-7651-01 5 180432639 180432639 A G BTNL3 Missense_Mutation p.T390A 0.28 tolerated(0.14) benign(0.315) TCGA-IB-7651-01 5 180475061 180475061 G A BTNL9 Missense_Mutation p.V82M 0.24 deleterious(0) probably_damaging(0.984) TCGA-IB-7651-01 5 180480219 180480219 C A BTNL9 Silent p.A252A 0.21 TCGA-IB-7651-01 5 180486818 180486818 C A BTNL9 Missense_Mutation p.L522I 0.08 tolerated(0.15) benign(0.038) TCGA-IB-7651-01 5 180622208 180622208 G A TRIM7 Silent p.F498F 0.23 TCGA-IB-7651-01 5 180630778 180630778 G A TRIM7 Intron 0.18 TCGA-IB-7651-01 5 180651776 180651776 C T TRIM41 Silent p.S259S 0.23 TCGA-IB-7651-01 5 180661696 180661696 C T TRIM41 Missense_Mutation p.S605L 0.15 deleterious(0.02) possibly_damaging(0.709) TCGA-IB-7651-01 5 180687720 180687720 G A TRIM52 Missense_Mutation p.S32F 0.17 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 5 1816159 1816159 C T NDUFS6 3'UTR 0.23 TCGA-IB-7651-01 5 182382 182382 G A PLEKHG4B Missense_Mutation p.A1254T 0.20 deleterious(0.01) benign(0.009) TCGA-IB-7651-01 5 19483440 19483440 C T CDH18 Missense_Mutation p.A618T 0.14 deleterious(0.02) probably_damaging(0.99) TCGA-IB-7651-01 5 194943 194943 A G LRRC14B Silent p.G340G 0.15 TCGA-IB-7651-01 5 195268 195268 C T LRRC14B Nonsense_Mutation p.Q449* 0.21 TCGA-IB-7651-01 5 19544089 19544089 C T CDH18 Missense_Mutation p.D427N 0.22 tolerated(0.46) benign(0.103) TCGA-IB-7651-01 5 19612635 19612635 T G CDH18 Missense_Mutation p.D240A 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 5 22078698 22078698 T G CDH12 Missense_Mutation p.T30P 0.17 tolerated(0.35) benign(0.059) TCGA-IB-7651-01 5 23509692 23509692 G A PRDM9 Silent p.L61L 0.20 TCGA-IB-7651-01 5 23522454 23522454 C T PRDM9 Nonsense_Mutation p.R184* 0.16 TCGA-IB-7651-01 5 23522797 23522797 G A PRDM9 Missense_Mutation p.A229T 0.15 tolerated(0.05) benign(0.002) TCGA-IB-7651-01 5 23527381 23527381 C T PRDM9 Silent p.G728G 0.15 TCGA-IB-7651-01 5 235284 235284 G A SDHA Missense_Mutation p.V364I 0.10 tolerated_low_confidence(1) benign(0.004) TCGA-IB-7651-01 5 24487856 24487856 G T CDH10 Missense_Mutation p.N761K 0.18 deleterious(0) benign(0.327) TCGA-IB-7651-01 5 24488103 24488103 G A CDH10 Missense_Mutation p.A679V 0.14 tolerated(0.16) benign(0.245) TCGA-IB-7651-01 5 24509737 24509737 T G CDH10 Missense_Mutation p.E398D 0.18 tolerated(0.15) benign(0.324) TCGA-IB-7651-01 5 24535872 24535872 C T CDH10 Missense_Mutation p.A196T 0.14 deleterious(0.02) probably_damaging(0.975) TCGA-IB-7651-01 5 251561 251561 C T SDHA Missense_Mutation p.A591V 0.19 deleterious_low_confidence(0.01) benign(0.146) TCGA-IB-7651-01 5 26902639 26902639 C T CDH9 Missense_Mutation p.S400N 0.07 tolerated(0.05) benign(0.011) TCGA-IB-7651-01 5 26903822 26903822 G A CDH9 Missense_Mutation p.A308V 0.20 tolerated(1) benign(0.002) TCGA-IB-7651-01 5 26915978 26915978 C T CDH9 Missense_Mutation p.D95N 0.14 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 5 2747723 2747723 G A IRX2 Silent p.S457S 0.26 TCGA-IB-7651-01 5 2748989 2748989 G A IRX2 Missense_Mutation p.A278V 0.18 tolerated(0.6) benign(0) TCGA-IB-7651-01 5 2749012 2749012 G A IRX2 Silent p.D270D 0.16 TCGA-IB-7651-01 5 2749024 2749024 G A IRX2 Silent p.D266D 0.14 TCGA-IB-7651-01 5 2749548 2749548 G A IRX2 Silent p.D201D 0.16 TCGA-IB-7651-01 5 2749615 2749615 G A IRX2 Missense_Mutation p.T179I 0.19 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 5 2749890 2749890 G A IRX2 Silent p.Y87Y 0.13 TCGA-IB-7651-01 5 2752520 2752520 G A C5orf38 Missense_Mutation p.A48T 0.24 tolerated_low_confidence(0.07) possibly_damaging(0.695) TCGA-IB-7651-01 5 31297423 31297423 C T CDH6 Missense_Mutation p.T184M 0.16 deleterious(0) probably_damaging(0.913) TCGA-IB-7651-01 5 31316320 31316320 C T CDH6 Missense_Mutation p.P466S 0.13 tolerated(0.12) benign(0.077) TCGA-IB-7651-01 5 31423045 31423045 C T DROSHA Missense_Mutation p.E1090K 0.15 deleterious(0.02) possibly_damaging(0.76) TCGA-IB-7651-01 5 31468141 31468141 C A DROSHA Silent p.L757L 0.17 TCGA-IB-7651-01 5 31486629 31486629 G A DROSHA Missense_Mutation p.T628M 0.17 deleterious(0) probably_damaging(0.919) TCGA-IB-7651-01 5 31493337 31493337 A G DROSHA Missense_Mutation p.F607L 0.15 tolerated(0.55) benign(0.019) TCGA-IB-7651-01 5 32087337 32087337 G A PDZD2 Silent p.R1261R 0.15 TCGA-IB-7651-01 5 32088716 32088716 C T PDZD2 Missense_Mutation p.P1721L 0.20 tolerated(0.54) benign(0.002) TCGA-IB-7651-01 5 32101045 32101045 C T PDZD2 Intron 0.16 TCGA-IB-7651-01 5 32126345 32126345 C T GOLPH3 Nonsense_Mutation p.W290* 0.17 TCGA-IB-7651-01 5 32126532 32126532 T G GOLPH3 Missense_Mutation p.D228A 0.21 deleterious(0.03) possibly_damaging(0.774) TCGA-IB-7651-01 5 32230272 32230272 T G MTMR12 Missense_Mutation p.K619T 0.16 deleterious(0.01) possibly_damaging(0.765) TCGA-IB-7651-01 5 32355822 32355822 A C ZFR 3'UTR 0.12 TCGA-IB-7651-01 5 32387723 32387723 G A ZFR Silent p.L811L 0.17 TCGA-IB-7651-01 5 32712326 32712326 G A NPR3 Silent p.S148S 0.16 TCGA-IB-7651-01 5 33461024 33461024 G A TARS Missense_Mutation p.R456Q 0.19 deleterious(0.01) possibly_damaging(0.473) TCGA-IB-7651-01 5 33527365 33527365 A G ADAMTS12 Silent p.C1571C 0.09 TCGA-IB-7651-01 5 33614342 33614342 C T ADAMTS12 Splice_Site p.X843_splice 0.13 TCGA-IB-7651-01 5 33615950 33615950 C T ADAMTS12 Missense_Mutation p.E791K 0.16 deleterious(0) possibly_damaging(0.731) TCGA-IB-7651-01 5 33641986 33641986 T C ADAMTS12 Silent p.S549S 0.15 TCGA-IB-7651-01 5 33649745 33649745 C T ADAMTS12 Silent p.P416P 0.14 TCGA-IB-7651-01 5 33937494 33937494 C T RXFP3 Silent p.L217L 0.16 TCGA-IB-7651-01 5 33944779 33944779 C T SLC45A2 Missense_Mutation p.A523T 0.16 tolerated(0.28) possibly_damaging(0.654) TCGA-IB-7651-01 5 33989288 33989288 T C AMACR Missense_Mutation p.I353M 0.17 deleterious(0) possibly_damaging(0.891) TCGA-IB-7651-01 5 34008160 34008160 A G AMACR 5'Flank 0.09 TCGA-IB-7651-01 5 34033454 34033454 G A C1QTNF3 Silent p.G175G 0.16 TCGA-IB-7651-01 5 34033554 34033554 C T C1QTNF3 Missense_Mutation p.G142E 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 34803869 34803869 G T RAI14 Missense_Mutation p.R106S 0.20 deleterious(0) benign(0.087) TCGA-IB-7651-01 5 34824489 34824489 G T RAI14 Nonsense_Mutation p.E851* 0.15 TCGA-IB-7651-01 5 34949740 34949740 G A DNAJC21 Silent p.E426E 0.11 TCGA-IB-7651-01 5 35026586 35026586 C T AGXT2 Missense_Mutation p.E267K 0.12 tolerated(0.42) benign(0.085) TCGA-IB-7651-01 5 35065420 35065420 G T PRLR Missense_Mutation p.A547D 0.13 deleterious(0.01) possibly_damaging(0.717) TCGA-IB-7651-01 5 35065452 35065452 C T PRLR Silent p.K536K 0.13 TCGA-IB-7651-01 5 35068880 35068880 C T PRLR Splice_Site p.X262_splice 0.17 TCGA-IB-7651-01 5 35072836 35072836 G A PRLR Silent p.D128D 0.17 TCGA-IB-7651-01 5 35691298 35691298 G T SPEF2 Nonsense_Mutation p.G562* 0.17 TCGA-IB-7651-01 5 35740046 35740046 A G SPEF2 Missense_Mutation p.Y1030C 0.16 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 5 35740347 35740347 C T SPEF2 Missense_Mutation p.A1103V 0.14 deleterious(0) benign(0.439) TCGA-IB-7651-01 5 35856998 35856998 T C IL7R 5'UTR 0.20 TCGA-IB-7651-01 5 35876421 35876421 C A IL7R Missense_Mutation p.L405M 0.19 deleterious(0.02) probably_damaging(0.986) TCGA-IB-7651-01 5 35954234 35954234 G A UGT3A1 3'UTR 0.19 TCGA-IB-7651-01 5 35957307 35957307 G A UGT3A1 Missense_Mutation p.P353L 0.16 deleterious(0) probably_damaging(0.969) TCGA-IB-7651-01 5 3596479 3596479 G T IRX1 Missense_Mutation p.S87I 0.15 deleterious(0.01) benign(0.1) TCGA-IB-7651-01 5 35965575 35965575 A C UGT3A1 Missense_Mutation p.D252E 0.16 deleterious(0) probably_damaging(0.947) TCGA-IB-7651-01 5 35965630 35965630 C A UGT3A1 Missense_Mutation p.R234M 0.16 deleterious(0.03) probably_damaging(0.997) TCGA-IB-7651-01 5 35965841 35965841 C T UGT3A1 Missense_Mutation p.A164T 0.09 tolerated(0.14) benign(0.088) TCGA-IB-7651-01 5 35965947 35965947 C A UGT3A1 Missense_Mutation p.K128N 0.14 tolerated(0.39) benign(0.02) TCGA-IB-7651-01 5 35988604 35988604 C A UGT3A1 Missense_Mutation p.E48D 0.06 tolerated(1) benign(0.003) TCGA-IB-7651-01 5 3599539 3599539 G T IRX1 Missense_Mutation p.E159D 0.14 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 5 3600167 3600167 G A IRX1 Missense_Mutation p.G369S 0.14 tolerated(0.08) probably_damaging(0.987) TCGA-IB-7651-01 5 3600738 3600738 C T IRX1 Missense_Mutation p.P443L 0.14 tolerated(0.12) probably_damaging(0.981) TCGA-IB-7651-01 5 36038073 36038073 C T UGT3A2 Missense_Mutation p.S374N 0.18 deleterious(0.01) probably_damaging(0.986) TCGA-IB-7651-01 5 36049058 36049058 C T UGT3A2 Missense_Mutation p.R259Q 0.18 tolerated(0.18) probably_damaging(0.954) TCGA-IB-7651-01 5 36066972 36066972 C T UGT3A2 5'UTR 0.17 TCGA-IB-7651-01 5 36108727 36108727 A C LMBRD2 Silent p.R602R 0.21 TCGA-IB-7651-01 5 36122989 36122989 G A LMBRD2 Silent p.I299I 0.07 TCGA-IB-7651-01 5 36141208 36141208 C T LMBRD2 Splice_Site p.X123_splice 0.16 TCGA-IB-7651-01 5 36168460 36168460 A G SKP2 Silent p.E194E 0.20 TCGA-IB-7651-01 5 36225652 36225652 A G NADK2 Silent p.D184D 0.07 TCGA-IB-7651-01 5 36255604 36255604 C A RANBP3L Missense_Mutation p.S356I 0.12 deleterious(0.01) probably_damaging(0.987) TCGA-IB-7651-01 5 36961636 36961636 C T NIPBL Missense_Mutation p.P137S 0.15 tolerated(0.06) benign(0.242) TCGA-IB-7651-01 5 37000589 37000589 G A NIPBL Missense_Mutation p.S1140N 0.16 deleterious_low_confidence(0.04) benign(0.075) TCGA-IB-7651-01 5 37000985 37000985 C A NIPBL Missense_Mutation p.P1190H 0.17 tolerated(0.15) benign(0.019) TCGA-IB-7651-01 5 37020568 37020568 G A NIPBL Missense_Mutation p.R1673H 0.14 deleterious(0.03) possibly_damaging(0.508) TCGA-IB-7651-01 5 37045656 37045656 G A NIPBL Missense_Mutation p.R2152Q 0.20 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 5 37051924 37051924 C T NIPBL Missense_Mutation p.A2333V 0.22 tolerated(0.26) benign(0.122) TCGA-IB-7651-01 5 37051929 37051929 C T NIPBL Missense_Mutation p.R2335W 0.16 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 5 37059079 37059079 G A NIPBL Silent p.R2499R 0.14 TCGA-IB-7651-01 5 37138820 37138820 A G C5orf42 Splice_Site p.X2877_splice 0.07 TCGA-IB-7651-01 5 37181020 37181020 C T C5orf42 Missense_Mutation p.A1837T 0.16 tolerated(0.39) benign(0.017) TCGA-IB-7651-01 5 37187589 37187589 C T C5orf42 Missense_Mutation p.R1336Q 0.14 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 37187945 37187945 C T C5orf42 Splice_Site p.X1271_splice 0.15 TCGA-IB-7651-01 5 37201716 37201716 G T C5orf42 Missense_Mutation p.P1162T 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 37324155 37324155 C T NUP155 Missense_Mutation p.G716S 0.16 tolerated(0.3) benign(0.2) TCGA-IB-7651-01 5 37331826 37331826 T C NUP155 Silent p.G530G 0.20 TCGA-IB-7651-01 5 37370807 37370807 A G NUP155 Intron 0.19 TCGA-IB-7651-01 5 37479970 37479970 G T WDR70 Nonsense_Mutation p.G241* 0.18 TCGA-IB-7651-01 5 37723012 37723012 C T WDR70 Silent p.L525L 0.17 TCGA-IB-7651-01 5 38403829 38403829 C T EGFLAM Intron 0.16 TCGA-IB-7651-01 5 38409193 38409193 T G EGFLAM Missense_Mutation p.S446A 0.24 tolerated(0.59) benign(0.012) TCGA-IB-7651-01 5 38427240 38427240 A T EGFLAM Missense_Mutation p.D647V 0.04 deleterious(0) possibly_damaging(0.776) TCGA-IB-7651-01 5 38484883 38484883 C T LIFR Missense_Mutation p.R862Q 0.14 tolerated(0.08) probably_damaging(0.991) TCGA-IB-7651-01 5 38493825 38493825 C T LIFR Missense_Mutation p.D650N 0.19 tolerated(0.39) benign(0.032) TCGA-IB-7651-01 5 38496596 38496596 C A LIFR Missense_Mutation p.Q591H 0.21 tolerated(0.22) benign(0.013) TCGA-IB-7651-01 5 38530694 38530694 C T LIFR Missense_Mutation p.R19K 0.07 tolerated_low_confidence(0.13) benign(0.005) TCGA-IB-7651-01 5 38923316 38923316 T A OSMR Silent p.A610A 0.19 TCGA-IB-7651-01 5 38925342 38925342 C T OSMR Missense_Mutation p.P694L 0.19 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 5 38933354 38933354 T G OSMR Missense_Mutation p.N916K 0.18 tolerated(0.6) possibly_damaging(0.798) TCGA-IB-7651-01 5 38942978 38942978 C T RICTOR Missense_Mutation p.R1670Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 5 38947536 38947536 T G RICTOR Missense_Mutation p.K1382Q 0.11 deleterious(0.02) benign(0.389) TCGA-IB-7651-01 5 38950004 38950004 C T RICTOR Missense_Mutation p.D1316N 0.15 tolerated(0.13) probably_damaging(0.961) TCGA-IB-7651-01 5 38950285 38950285 G A RICTOR Missense_Mutation p.T1222I 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 5 38953136 38953136 G A RICTOR Missense_Mutation p.P950S 0.11 deleterious(0.03) possibly_damaging(0.904) TCGA-IB-7651-01 5 39285239 39285239 G A C9 3'UTR 0.18 TCGA-IB-7651-01 5 39341328 39341328 A C C9 Missense_Mutation p.D132E 0.08 tolerated(0.17) benign(0.119) TCGA-IB-7651-01 5 39381710 39381710 G A DAB2 Silent p.A450A 0.20 TCGA-IB-7651-01 5 39382969 39382969 C T DAB2 Nonsense_Mutation p.W364* 0.16 TCGA-IB-7651-01 5 39383090 39383090 G A DAB2 Missense_Mutation p.S324L 0.04 tolerated(0.73) benign(0) TCGA-IB-7651-01 5 40681899 40681899 C A PTGER4 Silent p.I268I 0.18 TCGA-IB-7651-01 5 40947834 40947834 G A C7 Missense_Mutation p.S290N 0.20 tolerated(0.32) benign(0.103) TCGA-IB-7651-01 5 41057440 41057440 G T MROH2B Missense_Mutation p.A260E 0.16 deleterious(0) probably_damaging(0.937) TCGA-IB-7651-01 5 41149377 41149377 G T C6 Silent p.G863G 0.16 TCGA-IB-7651-01 5 41149447 41149447 C T C6 Missense_Mutation p.G840D 0.16 tolerated(0.68) benign(0.021) TCGA-IB-7651-01 5 41160256 41160256 C A C6 Missense_Mutation p.D558Y 0.21 deleterious(0) probably_damaging(0.959) TCGA-IB-7651-01 5 41186182 41186182 A C C6 Missense_Mutation p.V239G 0.18 deleterious(0) possibly_damaging(0.878) TCGA-IB-7651-01 5 41203349 41203349 G T C6 5'UTR 0.10 TCGA-IB-7651-01 5 41805740 41805740 G A OXCT1 Missense_Mutation p.A295V 0.20 tolerated(0.32) benign(0.001) TCGA-IB-7651-01 5 41912217 41912217 G A C5orf51 Missense_Mutation p.R178Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 5 42695175 42695175 C A GHR Missense_Mutation p.F141L 0.18 deleterious(0.03) probably_damaging(0.996) TCGA-IB-7651-01 5 42699999 42699999 C T GHR Silent p.I171I 0.16 TCGA-IB-7651-01 5 42719593 42719593 A C GHR 3'UTR 0.16 TCGA-IB-7651-01 5 427974 427974 C T AHRR Missense_Mutation p.A276V 0.18 deleterious(0.02) possibly_damaging(0.778) TCGA-IB-7651-01 5 42800927 42800927 C T SEPP1 Silent p.L347L 0.10 TCGA-IB-7651-01 5 42808439 42808439 C T SEPP1 Missense_Mutation p.G6E 0.19 deleterious(0.02) probably_damaging(0.973) TCGA-IB-7651-01 5 43161449 43161449 C T ZNF131 Missense_Mutation p.S157L 0.20 deleterious(0.01) benign(0.085) TCGA-IB-7651-01 5 43161521 43161521 A G ZNF131 Missense_Mutation p.D181G 0.19 tolerated(0.14) benign(0.224) TCGA-IB-7651-01 5 43280362 43280362 A C NIM1K Missense_Mutation p.K281T 0.21 tolerated(0.11) benign(0.038) TCGA-IB-7651-01 5 434085 434085 T C AHRR Silent p.D432D 0.19 TCGA-IB-7651-01 5 43446488 43446488 G A C5orf28 Missense_Mutation p.R162C 0.14 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 43533874 43533874 T C PAIP1 Silent p.T406T 0.18 TCGA-IB-7651-01 5 43609350 43609350 G A NNT Missense_Mutation p.S18N 0.12 tolerated_low_confidence(0.05) benign(0.001) TCGA-IB-7651-01 5 43651986 43651986 G T NNT Missense_Mutation p.Q621H 0.16 deleterious(0.02) possibly_damaging(0.82) TCGA-IB-7651-01 5 43659279 43659279 A T NNT Missense_Mutation p.T821S 0.18 tolerated(0.3) probably_damaging(0.998) TCGA-IB-7651-01 5 43702773 43702773 G T NNT Missense_Mutation p.A1016S 0.14 deleterious(0.02) benign(0.371) TCGA-IB-7651-01 5 43704565 43704565 A C NNT 3'UTR 0.19 TCGA-IB-7651-01 5 446344 446344 C T EXOC3 Silent p.A8A 0.12 TCGA-IB-7651-01 5 44812023 44812023 C T MRPS30 Missense_Mutation p.P252S 0.20 tolerated(0.07) probably_damaging(0.909) TCGA-IB-7651-01 5 44815315 44815315 T G MRPS30 3'UTR 0.20 TCGA-IB-7651-01 5 45262687 45262687 G A HCN1 Missense_Mutation p.A670V 0.19 tolerated_low_confidence(0.16) benign(0.003) TCGA-IB-7651-01 5 45262699 45262699 G A HCN1 Missense_Mutation p.P666L 0.18 deleterious_low_confidence(0.03) benign(0.002) TCGA-IB-7651-01 5 45303919 45303919 C T HCN1 Missense_Mutation p.R467Q 0.17 deleterious(0) probably_damaging(0.962) TCGA-IB-7651-01 5 453694 453694 T C EXOC3 Missense_Mutation p.W192R 0.17 tolerated(0.06) probably_damaging(0.992) TCGA-IB-7651-01 5 49962895 49962895 A C PARP8 5'UTR 0.20 TCGA-IB-7651-01 5 50090042 50090042 A T PARP8 Missense_Mutation p.I247F 0.20 deleterious(0) benign(0.091) TCGA-IB-7651-01 5 50091153 50091153 C T PARP8 Missense_Mutation p.L444F 0.15 tolerated_low_confidence(0.41) benign(0.001) TCGA-IB-7651-01 5 52145208 52145208 G A ITGA1 Missense_Mutation p.R24H 0.20 tolerated(0.3) benign(0) TCGA-IB-7651-01 5 52160617 52160617 G A ITGA1 Missense_Mutation p.V106I 0.18 tolerated(0.18) benign(0.034) TCGA-IB-7651-01 5 52218680 52218680 T G ITGA1 Missense_Mutation p.V789G 0.16 deleterious(0) probably_damaging(0.972) TCGA-IB-7651-01 5 52221300 52221301 - T ITGA1 Frame_Shift_Ins p.S868Ffs*4 0.19 TCGA-IB-7651-01 5 52229781 52229781 T C ITGA1 Silent p.I973I 0.10 TCGA-IB-7651-01 5 52240794 52240794 C A ITGA1 Missense_Mutation p.L1103I 0.19 deleterious(0.03) benign(0.178) TCGA-IB-7651-01 5 5232600 5232600 T A ADAMTS16 Silent p.S607S 0.17 TCGA-IB-7651-01 5 5239367 5239367 C T ADAMTS16 Missense_Mutation p.T753I 0.23 tolerated(0.27) benign(0.315) TCGA-IB-7651-01 5 52396257 52396257 A G MOCS2 Missense_Mutation p.V162A 0.17 deleterious(0.01) probably_damaging(0.919) TCGA-IB-7651-01 5 52778894 52778894 C T FST Silent p.P90P 0.19 TCGA-IB-7651-01 5 52779404 52779404 C T FST Silent p.C116C 0.18 TCGA-IB-7651-01 5 5306689 5306689 T C ADAMTS16 Missense_Mutation p.Y1087H 0.21 deleterious(0.02) benign(0.178) TCGA-IB-7651-01 5 5306714 5306714 G A ADAMTS16 Missense_Mutation p.C1095Y 0.21 deleterious(0) possibly_damaging(0.739) TCGA-IB-7651-01 5 53751451 53751451 C T HSPB3 5'UTR 0.23 TCGA-IB-7651-01 5 53814741 53814741 A G SNX18 Missense_Mutation p.Y320C 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 5 53815541 53815541 G T SNX18 Missense_Mutation p.V587F 0.21 deleterious_low_confidence(0.03) unknown(0) TCGA-IB-7651-01 5 54327211 54327211 T G GZMK Missense_Mutation p.L128R 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-IB-7651-01 5 54416252 54416252 C T CDC20B Splice_Site p.X447_splice 0.18 TCGA-IB-7651-01 5 54442668 54442668 T C CDC20B Missense_Mutation p.N48S 0.18 tolerated(0.55) benign(0.003) TCGA-IB-7651-01 5 54527253 54527253 G T CCNO Missense_Mutation p.L335M 0.15 tolerated(0.13) possibly_damaging(0.573) TCGA-IB-7651-01 5 54527267 54527267 G A CCNO Missense_Mutation p.S330F 0.15 tolerated(0.59) probably_damaging(0.964) TCGA-IB-7651-01 5 54603911 54603911 A G SKIV2L2 Missense_Mutation p.K24E 0.18 tolerated(0.47) benign(0) TCGA-IB-7651-01 5 5460762 5460762 A T KIAA0947 Missense_Mutation p.T439S 0.07 tolerated(0.55) benign(0.041) TCGA-IB-7651-01 5 5463617 5463617 C T KIAA0947 Silent p.A1390A 0.18 TCGA-IB-7651-01 5 5463972 5463972 C T KIAA0947 Missense_Mutation p.R1509C 0.19 tolerated(0.06) probably_damaging(0.984) TCGA-IB-7651-01 5 5464772 5464772 C T KIAA0947 Silent p.L1775L 0.11 TCGA-IB-7651-01 5 54674996 54674996 G T SKIV2L2 Silent p.V675V 0.19 TCGA-IB-7651-01 5 54706447 54706447 T G SKIV2L2 Missense_Mutation p.F914C 0.15 tolerated(0.14) benign(0.124) TCGA-IB-7651-01 5 5489440 5489440 C T KIAA0947 Silent p.G2266G 0.15 TCGA-IB-7651-01 5 55059041 55059041 A C DDX4 Missense_Mutation p.M82L 0.17 tolerated_low_confidence(0.65) benign(0) TCGA-IB-7651-01 5 55076936 55076936 G A DDX4 Missense_Mutation p.G180D 0.17 tolerated_low_confidence(0.19) benign(0.012) TCGA-IB-7651-01 5 55094363 55094363 A C DDX4 Missense_Mutation p.K527Q 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 55110988 55110988 G T DDX4 Missense_Mutation p.V659L 0.17 deleterious(0.01) benign(0.209) TCGA-IB-7651-01 5 55237234 55237234 C T IL6ST Silent p.R811R 0.19 TCGA-IB-7651-01 5 55237336 55237336 G A IL6ST Silent p.F777F 0.18 TCGA-IB-7651-01 5 55260120 55260120 T C IL6ST Missense_Mutation p.D171G 0.18 deleterious(0.04) possibly_damaging(0.773) TCGA-IB-7651-01 5 55264223 55264223 C A IL6ST Missense_Mutation p.L124F 0.13 tolerated(0.34) benign(0.001) TCGA-IB-7651-01 5 55407022 55407022 C T ANKRD55 Missense_Mutation p.R518K 0.04 tolerated_low_confidence(0.56) benign(0.155) TCGA-IB-7651-01 5 56155658 56155658 T C MAP3K1 Silent p.S250S 0.16 TCGA-IB-7651-01 5 56177726 56177726 G T MAP3K1 Missense_Mutation p.S900I 0.22 deleterious_low_confidence(0) benign(0.276) TCGA-IB-7651-01 5 56177918 56177918 G T MAP3K1 Missense_Mutation p.S964I 0.22 deleterious_low_confidence(0) possibly_damaging(0.709) TCGA-IB-7651-01 5 56181885 56181885 T C MAP3K1 Missense_Mutation p.V1370A 0.10 deleterious(0) possibly_damaging(0.489) TCGA-IB-7651-01 5 56224611 56224611 G A MIER3 Missense_Mutation p.L302F 0.17 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 5 56778460 56778460 G A ACTBL2 Silent p.D25D 0.17 TCGA-IB-7651-01 5 57753328 57753328 G A PLK2 Silent p.L266L 0.15 TCGA-IB-7651-01 5 57790515 57790515 G A GAPT Missense_Mutation p.S51N 0.17 tolerated(0.63) benign(0.001) TCGA-IB-7651-01 5 58270553 58270554 - A PDE4D Frame_Shift_Ins p.G790Wfs*9 0.19 TCGA-IB-7651-01 5 58285692 58285692 G T PDE4D Missense_Mutation p.L448I 0.07 tolerated_low_confidence(0.05) benign(0.375) TCGA-IB-7651-01 5 58511691 58511691 G A PDE4D Nonsense_Mutation p.R187* 0.18 TCGA-IB-7651-01 5 59064094 59064094 C T PDE4D Intron 0.20 TCGA-IB-7651-01 5 59940639 59940639 C T DEPDC1B Silent p.S214S 0.15 TCGA-IB-7651-01 5 60053435 60053435 A G ELOVL7 Silent p.A179A 0.19 TCGA-IB-7651-01 5 60187892 60187892 C A ERCC8 Intron 0.24 TCGA-IB-7651-01 5 60188320 60188320 G A ERCC8 Intron 0.20 TCGA-IB-7651-01 5 60188994 60188994 C A ERCC8 Intron 0.12 TCGA-IB-7651-01 5 63256399 63256399 G A HTR1A Missense_Mutation p.A383V 0.16 tolerated(0.06) probably_damaging(0.968) TCGA-IB-7651-01 5 6372625 6372625 C T MED10 Silent p.P133P 0.11 TCGA-IB-7651-01 5 6378502 6378502 C T MED10 Missense_Mutation p.S32N 0.22 tolerated(0.37) benign(0.16) TCGA-IB-7651-01 5 64064346 64064346 A T SREK1IP1 5'UTR 0.13 TCGA-IB-7651-01 5 64081400 64081400 C T CWC27 Silent p.S163S 0.19 TCGA-IB-7651-01 5 64084809 64084809 G A CWC27 Missense_Mutation p.A211T 0.15 deleterious(0) benign(0.103) TCGA-IB-7651-01 5 64483989 64483989 T C ADAMTS6 Missense_Mutation p.R922G 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 5 64766794 64766794 G T ADAMTS6 Silent p.A91A 0.19 TCGA-IB-7651-01 5 64863418 64863418 T G PPWD1 Missense_Mutation p.V92G 0.17 tolerated(0.1) possibly_damaging(0.778) TCGA-IB-7651-01 5 64886108 64886108 C A TRIM23 3'UTR 0.12 TCGA-IB-7651-01 5 64920154 64920154 C T TRIM23 5'UTR 0.20 TCGA-IB-7651-01 5 653215 653215 A G CEP72 Missense_Mutation p.M631V 0.12 tolerated(0.24) benign(0.007) TCGA-IB-7651-01 5 65324108 65324108 G T ERBB2IP Missense_Mutation p.K381N 0.10 deleterious(0) probably_damaging(0.967) TCGA-IB-7651-01 5 65350624 65350624 A C ERBB2IP Missense_Mutation p.S1160R 0.21 deleterious(0.01) possibly_damaging(0.905) TCGA-IB-7651-01 5 65371060 65371060 T C ERBB2IP Splice_Site p.X1328_splice 0.19 TCGA-IB-7651-01 5 65474603 65474603 G A SREK1 Silent p.K594K 0.19 TCGA-IB-7651-01 5 65892410 65892410 G A MAST4 5'UTR 0.15 TCGA-IB-7651-01 5 6604331 6604331 T G NSUN2 Missense_Mutation p.D626A 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 66084525 66084525 C T MAST4 Missense_Mutation p.A182V 0.14 benign(0.33) TCGA-IB-7651-01 5 66084569 66084569 C T MAST4 Missense_Mutation p.R197C 0.15 probably_damaging(0.988) TCGA-IB-7651-01 5 66432472 66432472 C T MAST4 Missense_Mutation p.P825L 0.14 probably_damaging(0.999) TCGA-IB-7651-01 5 66448536 66448536 C T MAST4 Nonsense_Mutation p.R1123* 0.17 TCGA-IB-7651-01 5 66459843 66459843 C T MAST4 Silent p.S1612S 0.16 TCGA-IB-7651-01 5 66460375 66460375 C T MAST4 Silent p.L1790L 0.17 TCGA-IB-7651-01 5 66461256 66461256 C T MAST4 Silent p.P2083P 0.18 TCGA-IB-7651-01 5 66461635 66461635 C T MAST4 Missense_Mutation p.R2210W 0.15 probably_damaging(0.994) TCGA-IB-7651-01 5 66461935 66461935 C T MAST4 Missense_Mutation p.P2310S 0.25 benign(0.02) TCGA-IB-7651-01 5 67575507 67575507 C T PIK3R1 Missense_Mutation p.P194S 0.19 deleterious(0.04) benign(0.204) TCGA-IB-7651-01 5 677962 677962 G A TPPP Missense_Mutation p.H72Y 0.21 deleterious(0.01) probably_damaging(0.919) TCGA-IB-7651-01 5 678080 678080 C T TPPP Silent p.S32S 0.14 TCGA-IB-7651-01 5 68524042 68524042 G T MRPS36 Missense_Mutation p.R41I 0.16 deleterious(0.01) benign(0.277) TCGA-IB-7651-01 5 68524106 68524106 A G MRPS36 Silent p.P62P 0.20 TCGA-IB-7651-01 5 68572463 68572463 C T CDK7 Nonsense_Mutation p.Q320* 0.16 TCGA-IB-7651-01 5 70785502 70785502 A C BDP1 Missense_Mutation p.K495N 0.16 deleterious(0.03) benign(0.112) TCGA-IB-7651-01 5 70793140 70793140 C T BDP1 Missense_Mutation p.R615C 0.18 tolerated(0.14) benign(0.029) TCGA-IB-7651-01 5 70806004 70806004 A G BDP1 Missense_Mutation p.I1029V 0.18 tolerated(0.55) benign(0.023) TCGA-IB-7651-01 5 70939654 70939654 C T MCCC2 Nonsense_Mutation p.R361* 0.17 TCGA-IB-7651-01 5 70948515 70948515 C T MCCC2 Missense_Mutation p.A503V 0.12 tolerated_low_confidence(0.14) benign(0.002) TCGA-IB-7651-01 5 71015722 71015722 G A CARTPT Missense_Mutation p.E59K 0.17 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 5 71490172 71490172 G A MAP1B Silent p.E330E 0.19 TCGA-IB-7651-01 5 71490541 71490541 G A MAP1B Silent p.L453L 0.16 TCGA-IB-7651-01 5 71491850 71491850 G A MAP1B Missense_Mutation p.E890K 0.18 possibly_damaging(0.771) TCGA-IB-7651-01 5 71492907 71492907 G A MAP1B Missense_Mutation p.S1242N 0.14 benign(0.152) TCGA-IB-7651-01 5 71495341 71495341 G T MAP1B Missense_Mutation p.Q2053H 0.17 benign(0.219) TCGA-IB-7651-01 5 71495820 71495820 G A MAP1B Missense_Mutation p.R2213H 0.18 probably_damaging(0.982) TCGA-IB-7651-01 5 71756349 71756349 C T ZNF366 Silent p.K325K 0.22 TCGA-IB-7651-01 5 72419582 72419582 G A TMEM171 Missense_Mutation p.V128I 0.17 tolerated(1) benign(0.017) TCGA-IB-7651-01 5 72469182 72469182 G A TMEM174 Missense_Mutation p.A38T 0.08 tolerated(0.22) probably_damaging(0.998) TCGA-IB-7651-01 5 72875701 72875701 G T UTP15 Splice_Site p.X447_splice 0.16 TCGA-IB-7651-01 5 73154028 73154028 G T ARHGEF28 Missense_Mutation p.E677D 0.16 tolerated(0.12) benign(0.232) TCGA-IB-7651-01 5 73931214 73931214 T C ENC1 Missense_Mutation p.E366G 0.18 deleterious(0.03) benign(0.287) TCGA-IB-7651-01 5 74009400 74009400 C T HEXB Nonsense_Mutation p.R281* 0.16 TCGA-IB-7651-01 5 74026139 74026139 C T GFM2 Missense_Mutation p.G558R 0.20 deleterious(0) probably_damaging(0.979) TCGA-IB-7651-01 5 74091955 74091955 G T FAM169A Missense_Mutation p.P387H 0.04 tolerated(0.09) benign(0.022) TCGA-IB-7651-01 5 74639762 74639762 C T HMGCR Missense_Mutation p.R84C 0.15 deleterious(0.01) possibly_damaging(0.901) TCGA-IB-7651-01 5 74676924 74676924 G A COL4A3BP Silent p.L702L 0.17 TCGA-IB-7651-01 5 75428010 75428010 C T SV2C Silent p.C145C 0.09 TCGA-IB-7651-01 5 75428107 75428107 A G SV2C Missense_Mutation p.S178G 0.17 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 5 75914417 75914417 T A F2RL2 Missense_Mutation p.T39S 0.18 tolerated(0.16) benign(0.305) TCGA-IB-7651-01 5 75932970 75932970 A C IQGAP2 Missense_Mutation p.K631T 0.21 tolerated(0.08) benign(0.434) TCGA-IB-7651-01 5 75967644 75967644 C T IQGAP2 Silent p.V968V 0.20 TCGA-IB-7651-01 5 75979000 75979000 C T IQGAP2 Silent p.L1241L 0.17 TCGA-IB-7651-01 5 76129450 76129450 G A F2RL1 Missense_Mutation p.D340N 0.19 deleterious(0) probably_damaging(0.949) TCGA-IB-7651-01 5 76326595 76326595 G A AGGF1 Missense_Mutation p.A2T 0.09 deleterious_low_confidence(0) benign(0.184) TCGA-IB-7651-01 5 76331664 76331664 G T AGGF1 Intron 0.16 TCGA-IB-7651-01 5 76700561 76700561 A C PDE8B Missense_Mutation p.R409S 0.17 tolerated(0.25) benign(0.271) TCGA-IB-7651-01 5 76758930 76758930 C A WDR41 Missense_Mutation p.R113I 0.16 deleterious(0) possibly_damaging(0.781) TCGA-IB-7651-01 5 76926430 76926430 C T OTP Missense_Mutation p.A213T 0.15 tolerated(0.13) benign(0.009) TCGA-IB-7651-01 5 76933016 76933016 G A OTP Missense_Mutation p.A26V 0.12 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-IB-7651-01 5 76989061 76989061 T A TBCA Intron 0.17 TCGA-IB-7651-01 5 7713003 7713003 G A ADCY2 Missense_Mutation p.R538H 0.18 tolerated(0.12) benign(0.059) TCGA-IB-7651-01 5 7717276 7717276 G A ADCY2 Silent p.K543K 0.13 TCGA-IB-7651-01 5 77311268 77311268 C A AP3B1 Missense_Mutation p.G1033C 0.18 deleterious(0.03) probably_damaging(0.965) TCGA-IB-7651-01 5 77423893 77423893 C T AP3B1 Silent p.A643A 0.17 TCGA-IB-7651-01 5 77458776 77458776 C A AP3B1 Splice_Site p.X411_splice 0.16 TCGA-IB-7651-01 5 78260339 78260339 C T ARSB Missense_Mutation p.R197Q 0.20 deleterious(0.02) probably_damaging(0.995) TCGA-IB-7651-01 5 78264847 78264847 C A ARSB Nonsense_Mutation p.G161* 0.10 TCGA-IB-7651-01 5 7827012 7827012 C A ADCY2 3'UTR 0.14 TCGA-IB-7651-01 5 7832130 7832130 G T C5orf49 Missense_Mutation p.P93T 0.16 tolerated(0.33) benign(0.023) TCGA-IB-7651-01 5 78328588 78328588 G A DMGDH Missense_Mutation p.S480F 0.21 deleterious(0.03) benign(0.289) TCGA-IB-7651-01 5 78338189 78338189 A T DMGDH Silent p.G370G 0.17 TCGA-IB-7651-01 5 78340214 78340214 C T DMGDH Missense_Mutation p.E303K 0.19 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 5 78351653 78351653 G A DMGDH Silent p.L119L 0.16 TCGA-IB-7651-01 5 78376548 78376548 G T BHMT2 Missense_Mutation p.R99S 0.19 deleterious(0.02) benign(0.297) TCGA-IB-7651-01 5 78416175 78416175 G A BHMT Silent p.G96G 0.20 TCGA-IB-7651-01 5 78611996 78611996 G T JMY Nonsense_Mutation p.E945* 0.24 TCGA-IB-7651-01 5 7861322 7861322 T C FASTKD3 Silent p.L608L 0.18 TCGA-IB-7651-01 5 7866895 7866895 G A FASTKD3 Silent p.N434N 0.17 TCGA-IB-7651-01 5 7867281 7867281 G T FASTKD3 Missense_Mutation p.L306I 0.18 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 5 7868079 7868079 G A FASTKD3 Missense_Mutation p.R40C 0.09 tolerated(0.26) benign(0.002) TCGA-IB-7651-01 5 78692711 78692711 T G HOMER1 Missense_Mutation p.K271Q 0.20 tolerated(0.37) possibly_damaging(0.462) TCGA-IB-7651-01 5 7897209 7897209 A G MTRR Missense_Mutation p.I628V 0.15 tolerated(1) benign(0.007) TCGA-IB-7651-01 5 79026176 79026176 G A CMYA5 Missense_Mutation p.E530K 0.21 benign(0.021) TCGA-IB-7651-01 5 79026860 79026860 A G CMYA5 Missense_Mutation p.T758A 0.18 benign(0) TCGA-IB-7651-01 5 79029439 79029439 G T CMYA5 Missense_Mutation p.E1617D 0.21 benign(0.023) TCGA-IB-7651-01 5 79030920 79030920 A C CMYA5 Missense_Mutation p.K2111T 0.22 possibly_damaging(0.665) TCGA-IB-7651-01 5 79031203 79031203 G A CMYA5 Silent p.Q2205Q 0.20 TCGA-IB-7651-01 5 79032156 79032156 A G CMYA5 Missense_Mutation p.Y2523C 0.20 benign(0.431) TCGA-IB-7651-01 5 79034343 79034343 C A CMYA5 Missense_Mutation p.S3252Y 0.15 probably_damaging(0.92) TCGA-IB-7651-01 5 79373958 79373958 G A THBS4 Missense_Mutation p.V725I 0.15 tolerated(0.46) benign(0.001) TCGA-IB-7651-01 5 79616966 79616966 G A SPZ1 Missense_Mutation p.S311N 0.17 tolerated(0.64) benign(0.002) TCGA-IB-7651-01 5 79732719 79732719 G T ZFYVE16 Missense_Mutation p.S72I 0.18 tolerated(0.63) benign(0.002) TCGA-IB-7651-01 5 79733552 79733552 G T ZFYVE16 Missense_Mutation p.D350Y 0.21 deleterious(0) probably_damaging(0.94) TCGA-IB-7651-01 5 79739023 79739023 C T ZFYVE16 Missense_Mutation p.P834L 0.11 deleterious(0.03) benign(0.025) TCGA-IB-7651-01 5 79743884 79743884 G T ZFYVE16 Nonsense_Mutation p.E922* 0.18 TCGA-IB-7651-01 5 79744105 79744105 T C ZFYVE16 Silent p.I995I 0.18 TCGA-IB-7651-01 5 79837528 79837528 C A FAM151B Missense_Mutation p.N236K 0.18 tolerated(0.72) benign(0.003) TCGA-IB-7651-01 5 79854218 79854218 A G ANKRD34B 3'UTR 0.18 TCGA-IB-7651-01 5 79924945 79924945 G A DHFR Silent p.G175G 0.21 TCGA-IB-7651-01 5 79945254 79945254 G A DHFR Nonsense_Mutation p.R66* 0.18 TCGA-IB-7651-01 5 80064769 80064769 C T MSH3 Nonsense_Mutation p.R734* 0.20 TCGA-IB-7651-01 5 80150042 80150042 G T MSH3 Missense_Mutation p.Q969H 0.21 tolerated(0.12) benign(0.022) TCGA-IB-7651-01 5 80404827 80404827 A G RASGRF2 Missense_Mutation p.I590V 0.17 tolerated(0.19) possibly_damaging(0.644) TCGA-IB-7651-01 5 80550874 80550874 C T CKMT2 Silent p.S170S 0.18 TCGA-IB-7651-01 5 80562074 80562074 G T CKMT2 Missense_Mutation p.K419N 0.17 deleterious_low_confidence(0.01) benign(0.026) TCGA-IB-7651-01 5 80655779 80655779 G A ACOT12 Nonsense_Mutation p.R147* 0.20 TCGA-IB-7651-01 5 80762814 80762814 G T SSBP2 Missense_Mutation p.P206H 0.18 deleterious(0) probably_damaging(0.93) TCGA-IB-7651-01 5 81608455 81608455 T C ATP6AP1L Silent p.L53L 0.19 TCGA-IB-7651-01 5 81613867 81613867 C T ATP6AP1L Silent p.C141C 0.17 TCGA-IB-7651-01 5 82779357 82779357 G T VCAN Missense_Mutation p.S7I 0.16 deleterious(0.02) benign(0.119) TCGA-IB-7651-01 5 82786232 82786232 G A VCAN Missense_Mutation p.R129H 0.21 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 5 82789700 82789700 G A VCAN Missense_Mutation p.R233H 0.20 deleterious(0) possibly_damaging(0.87) TCGA-IB-7651-01 5 82835411 82835411 C A VCAN Missense_Mutation p.P2197T 0.15 tolerated(0.24) possibly_damaging(0.642) TCGA-IB-7651-01 5 82837166 82837166 A G VCAN Missense_Mutation p.I2782V 0.18 tolerated(0.07) benign(0.081) TCGA-IB-7651-01 5 82937350 82937350 G A HAPLN1 Silent p.L344L 0.16 TCGA-IB-7651-01 5 83362285 83362285 G A EDIL3 Silent p.G264G 0.18 TCGA-IB-7651-01 5 83549944 83549944 C A EDIL3 Missense_Mutation p.D52Y 0.09 deleterious(0) benign(0.132) TCGA-IB-7651-01 5 85578621 85578621 C T NBPF22P RNA 0.15 TCGA-IB-7651-01 5 85578656 85578656 C T NBPF22P RNA 0.16 TCGA-IB-7651-01 5 85915251 85915251 T G COX7C Missense_Mutation p.F53V 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 5 86564812 86564812 G T RASA1 Intron 0.15 TCGA-IB-7651-01 5 86672311 86672311 T C RASA1 Missense_Mutation p.S705P 0.21 deleterious(0.01) probably_damaging(0.958) TCGA-IB-7651-01 5 87498877 87498877 G A TMEM161B Silent p.I272I 0.16 TCGA-IB-7651-01 5 89769706 89769706 G T MBLAC2 Missense_Mutation p.A135D 0.09 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 5 89770000 89770000 C T MBLAC2 Missense_Mutation p.G37D 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 89925335 89925335 T C GPR98 Silent p.N606N 0.18 TCGA-IB-7651-01 5 89938474 89938474 G A GPR98 Silent p.V754V 0.04 TCGA-IB-7651-01 5 90020790 90020790 T G GPR98 Missense_Mutation p.I3297S 0.14 possibly_damaging(0.507) TCGA-IB-7651-01 5 90041501 90041501 C T GPR98 Silent p.F3621F 0.11 TCGA-IB-7651-01 5 90050900 90050900 C T GPR98 Silent p.V3826V 0.21 TCGA-IB-7651-01 5 90106690 90106690 C T GPR98 Missense_Mutation p.P5205S 0.22 possibly_damaging(0.857) TCGA-IB-7651-01 5 90144584 90144584 A G GPR98 Missense_Mutation p.E5717G 0.09 possibly_damaging(0.727) TCGA-IB-7651-01 5 9122771 9122771 G A SEMA5A Missense_Mutation p.S593F 0.19 deleterious(0) possibly_damaging(0.756) TCGA-IB-7651-01 5 9154665 9154665 G A SEMA5A Silent p.F472F 0.19 TCGA-IB-7651-01 5 9154803 9154803 G A SEMA5A Silent p.Y426Y 0.17 TCGA-IB-7651-01 5 9197373 9197373 G A SEMA5A Silent p.S325S 0.20 TCGA-IB-7651-01 5 92923924 92923924 C A NR2F1 Silent p.T255T 0.19 TCGA-IB-7651-01 5 92929622 92929622 C T NR2F1 3'UTR 0.16 TCGA-IB-7651-01 5 93076496 93076496 G A POU5F2 Silent p.F258F 0.17 TCGA-IB-7651-01 5 9380032 9380032 C T SEMA5A Nonsense_Mutation p.W9* 0.15 TCGA-IB-7651-01 5 94619986 94619986 G A MCTP1 Silent p.N98N 0.22 TCGA-IB-7651-01 5 94814107 94814107 C A TTC37 Missense_Mutation p.A1418S 0.16 tolerated(0.09) possibly_damaging(0.489) TCGA-IB-7651-01 5 94818235 94818235 A G TTC37 Missense_Mutation p.V1385A 0.17 tolerated(0.1) benign(0.176) TCGA-IB-7651-01 5 94901721 94901721 A G ARSK Missense_Mutation p.H49R 0.23 tolerated(0.34) benign(0.002) TCGA-IB-7651-01 5 95011277 95011277 C T SPATA9 Missense_Mutation p.A73T 0.16 tolerated(0.46) benign(0.022) TCGA-IB-7651-01 5 95072759 95072759 C T RHOBTB3 Missense_Mutation p.A132V 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 95091253 95091253 A C RHOBTB3 Missense_Mutation p.H279P 0.20 tolerated(0.33) benign(0.002) TCGA-IB-7651-01 5 95728750 95728750 G A PCSK1 Silent p.D739D 0.19 TCGA-IB-7651-01 5 95746599 95746599 C A PCSK1 Missense_Mutation p.S325I 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 95761565 95761565 T G PCSK1 Missense_Mutation p.N119H 0.19 tolerated(0.19) benign(0.002) TCGA-IB-7651-01 5 96107374 96107374 A C CAST Missense_Mutation p.K748N 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IB-7651-01 5 9629925 9629925 C A TAS2R1 Nonsense_Mutation p.E74* 0.16 TCGA-IB-7651-01 5 96315306 96315306 C T LNPEP Missense_Mutation p.P162S 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 96349496 96349496 A G LNPEP Missense_Mutation p.D727G 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 5 96430577 96430577 G A LIX1 Silent p.L242L 0.18 TCGA-IB-7651-01 5 98129023 98129023 C T RGMB Missense_Mutation p.R335C 0.21 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 5 98209328 98209328 T C CHD1 Silent p.L1180L 0.20 TCGA-IB-7651-01 6 100055036 100055036 G A PRDM13 Silent p.E42E 0.15 TCGA-IB-7651-01 6 100062174 100062174 G T PRDM13 Missense_Mutation p.G555C 0.10 deleterious(0) possibly_damaging(0.65) TCGA-IB-7651-01 6 100368791 100368791 G A MCHR2 3'UTR 0.21 TCGA-IB-7651-01 6 100395675 100395675 C T MCHR2 Missense_Mutation p.A119T 0.16 tolerated(1) benign(0.173) TCGA-IB-7651-01 6 100897277 100897277 C T SIM1 Missense_Mutation p.A169T 0.13 tolerated(0.42) probably_damaging(0.998) TCGA-IB-7651-01 6 101054895 101054895 G A ASCC3 Missense_Mutation p.H1619Y 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 6 101075801 101075801 T C ASCC3 Missense_Mutation p.T1480A 0.17 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 6 101215160 101215160 T C ASCC3 Missense_Mutation p.E486G 0.18 tolerated(0.07) benign(0.426) TCGA-IB-7651-01 6 102074437 102074437 C A GRIK2 Missense_Mutation p.L156I 0.18 tolerated(0.32) possibly_damaging(0.838) TCGA-IB-7651-01 6 102266352 102266352 C A GRIK2 Silent p.T437T 0.18 TCGA-IB-7651-01 6 102376473 102376473 C T GRIK2 Missense_Mutation p.A684V 0.14 tolerated(0.19) benign(0.007) TCGA-IB-7651-01 6 102516421 102516421 G A GRIK2 3'UTR 0.21 TCGA-IB-7651-01 6 10419699 10419699 C A TFAP2A 5'Flank 0.07 TCGA-IB-7651-01 6 105198220 105198220 T G HACE1 Missense_Mutation p.E780A 0.23 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 6 105198346 105198346 G A HACE1 Missense_Mutation p.A738V 0.20 tolerated(0.21) benign(0.089) TCGA-IB-7651-01 6 10529724 10529724 G T GCNT2 Missense_Mutation p.D194Y 0.09 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 6 105549001 105549001 G A BVES Missense_Mutation p.A349V 0.23 tolerated_low_confidence(0.41) benign(0) TCGA-IB-7651-01 6 10556976 10556976 C T GCNT2 Intron 0.20 TCGA-IB-7651-01 6 105606337 105606337 C A POPDC3 3'UTR 0.16 TCGA-IB-7651-01 6 105726037 105726037 G A PREP Silent p.N705N 0.19 TCGA-IB-7651-01 6 10626894 10626894 C T GCNT2 3'UTR 0.20 TCGA-IB-7651-01 6 106553699 106553699 A G PRDM1 Missense_Mutation p.N555S 0.16 tolerated(0.2) benign(0.119) TCGA-IB-7651-01 6 106554877 106554877 C T PRDM1 Missense_Mutation p.P665L 0.19 deleterious(0.01) possibly_damaging(0.752) TCGA-IB-7651-01 6 106967596 106967596 T C AIM1 Missense_Mutation p.I430T 0.19 tolerated_low_confidence(0.4) benign(0.002) TCGA-IB-7651-01 6 106968895 106968895 G A AIM1 Missense_Mutation p.S863N 0.20 deleterious(0.03) possibly_damaging(0.488) TCGA-IB-7651-01 6 107390904 107390904 G T BEND3 Missense_Mutation p.D497E 0.16 tolerated_low_confidence(0.59) benign(0.059) TCGA-IB-7651-01 6 107854756 107854756 G T SOBP Missense_Mutation p.S172I 0.20 deleterious(0.04) possibly_damaging(0.807) TCGA-IB-7651-01 6 107955419 107955419 G A SOBP Silent p.S457S 0.19 TCGA-IB-7651-01 6 107955830 107955830 C T SOBP Silent p.S594S 0.24 TCGA-IB-7651-01 6 108227665 108227665 C T SEC63 Silent p.E316E 0.17 TCGA-IB-7651-01 6 108496126 108496126 C T NR2E1 Silent p.D86D 0.17 TCGA-IB-7651-01 6 108499328 108499328 G A NR2E1 Missense_Mutation p.M175I 0.16 tolerated(0.16) benign(0.003) TCGA-IB-7651-01 6 108645053 108645053 G T LACE1 Missense_Mutation p.S55I 0.19 tolerated(0.13) benign(0.001) TCGA-IB-7651-01 6 108687502 108687502 C T LACE1 Silent p.V238V 0.13 TCGA-IB-7651-01 6 10874435 10874435 C T GCM2 Silent p.R438R 0.21 TCGA-IB-7651-01 6 10874603 10874603 C A GCM2 Silent p.V382V 0.17 TCGA-IB-7651-01 6 10877453 10877453 G A GCM2 Missense_Mutation p.T88I 0.19 deleterious(0) benign(0.102) TCGA-IB-7651-01 6 10877516 10877516 C T GCM2 Missense_Mutation p.R67H 0.14 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 108840900 108840900 G A LACE1 Missense_Mutation p.V402M 0.16 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 6 108984662 108984662 C T FOXO3 Missense_Mutation p.S209F 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 108984928 108984928 C T FOXO3 Missense_Mutation p.R298C 0.18 deleterious(0) probably_damaging(0.943) TCGA-IB-7651-01 6 108985303 108985303 C A FOXO3 Missense_Mutation p.L423M 0.14 tolerated(0.22) possibly_damaging(0.556) TCGA-IB-7651-01 6 109220981 109220981 G A ARMC2 Missense_Mutation p.R278H 0.17 tolerated(1) benign(0) TCGA-IB-7651-01 6 109225603 109225603 C A ARMC2 Missense_Mutation p.L340I 0.09 deleterious(0) probably_damaging(0.977) TCGA-IB-7651-01 6 109274296 109274296 C T ARMC2 Missense_Mutation p.R553C 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 109283323 109283323 G A ARMC2 Silent p.Q715Q 0.20 TCGA-IB-7651-01 6 109477094 109477094 A T CEP57L1 Intron 0.17 TCGA-IB-7651-01 6 109765460 109765460 G A MICAL1 Silent p.A1046A 0.15 TCGA-IB-7651-01 6 109768325 109768325 G T MICAL1 Silent p.T726T 0.12 TCGA-IB-7651-01 6 109768373 109768373 G T MICAL1 Silent p.L710L 0.14 TCGA-IB-7651-01 6 109768629 109768629 G A MICAL1 Silent p.T667T 0.07 TCGA-IB-7651-01 6 109775336 109775336 G T MICAL1 Missense_Mutation p.L22M 0.21 deleterious(0.03) benign(0.362) TCGA-IB-7651-01 6 109814515 109814515 T G AK9 3'UTR 0.19 TCGA-IB-7651-01 6 109815261 109815261 G A AK9 Missense_Mutation p.A1819V 0.13 tolerated(1) benign(0.043) TCGA-IB-7651-01 6 109850265 109850265 A G AK9 Silent p.I1194I 0.05 TCGA-IB-7651-01 6 110107619 110107619 A C FIG4 Missense_Mutation p.D688A 0.16 deleterious(0.01) benign(0.08) TCGA-IB-7651-01 6 110300884 110300884 C A GPR6 Missense_Mutation p.A190D 0.18 deleterious(0.01) possibly_damaging(0.852) TCGA-IB-7651-01 6 110301416 110301416 C T GPR6 3'UTR 0.16 TCGA-IB-7651-01 6 110423106 110423106 C T WASF1 Missense_Mutation p.A403T 0.19 tolerated(0.6) possibly_damaging(0.676) TCGA-IB-7651-01 6 110729641 110729641 T C DDO Silent p.T87T 0.19 TCGA-IB-7651-01 6 110734632 110734632 C A DDO Missense_Mutation p.G40C 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 111213405 111213405 T C AMD1 Missense_Mutation p.W157R 0.20 deleterious(0.02) benign(0.374) TCGA-IB-7651-01 6 111310254 111310254 T C RPF2 Silent p.G60G 0.17 TCGA-IB-7651-01 6 111493992 111493992 C A SLC16A10 Silent p.V146V 0.19 TCGA-IB-7651-01 6 111583508 111583508 A C KIAA1919 Missense_Mutation p.N26H 0.19 deleterious(0) possibly_damaging(0.684) TCGA-IB-7651-01 6 111621125 111621125 C T REV3L 3'UTR 0.11 TCGA-IB-7651-01 6 111621261 111621261 C T REV3L Silent p.L3117L 0.18 TCGA-IB-7651-01 6 111678315 111678315 C T REV3L Silent p.Q2362Q 0.17 TCGA-IB-7651-01 6 111693934 111693934 G T REV3L Missense_Mutation p.A1875D 0.18 deleterious(0) probably_damaging(0.968) TCGA-IB-7651-01 6 111695078 111695078 T A REV3L Missense_Mutation p.R1494W 0.18 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-IB-7651-01 6 111709256 111709256 T G REV3L Missense_Mutation p.K299Q 0.18 deleterious(0.05) possibly_damaging(0.62) TCGA-IB-7651-01 6 112382319 112382319 G T WISP3 Missense_Mutation p.K76N 0.18 deleterious(0.03) benign(0.395) TCGA-IB-7651-01 6 112390873 112390873 A C WISP3 3'UTR 0.18 TCGA-IB-7651-01 6 112392481 112392481 G A TUBE1 3'UTR 0.20 TCGA-IB-7651-01 6 112397143 112397143 G A TUBE1 Missense_Mutation p.T270M 0.19 deleterious(0) probably_damaging(0.949) TCGA-IB-7651-01 6 112440429 112440429 G A LAMA4 Missense_Mutation p.A1584V 0.19 tolerated(0.43) benign(0.014) TCGA-IB-7651-01 6 112454579 112454579 A G LAMA4 Missense_Mutation p.V1223A 0.14 deleterious(0) benign(0.1) TCGA-IB-7651-01 6 112476778 112476778 G A LAMA4 Nonsense_Mutation p.R650* 0.19 TCGA-IB-7651-01 6 112479990 112479990 G A LAMA4 Silent p.V587V 0.05 TCGA-IB-7651-01 6 112480017 112480017 G A LAMA4 Silent p.N578N 0.22 TCGA-IB-7651-01 6 112671386 112671386 C T RFPL4B Missense_Mutation p.S159F 0.14 deleterious(0) probably_damaging(0.949) TCGA-IB-7651-01 6 116381319 116381319 A G FRK Silent p.D52D 0.16 TCGA-IB-7651-01 6 116439102 116439102 T C NT5DC1 Missense_Mutation p.F175L 0.20 deleterious(0) possibly_damaging(0.775) TCGA-IB-7651-01 6 116441246 116441246 G T COL10A1 Missense_Mutation p.A678D 0.07 tolerated(0.07) possibly_damaging(0.746) TCGA-IB-7651-01 6 116442730 116442730 A G COL10A1 Silent p.G183G 0.20 TCGA-IB-7651-01 6 116579730 116579730 G T TSPYL4 5'Flank 0.11 TCGA-IB-7651-01 6 116600781 116600781 G A TSPYL1 Silent p.P71P 0.07 TCGA-IB-7651-01 6 116720703 116720703 G A DSE Missense_Mutation p.R97H 0.15 deleterious(0.01) probably_damaging(0.942) TCGA-IB-7651-01 6 116747782 116747782 C T DSE Silent p.S154S 0.19 TCGA-IB-7651-01 6 116747899 116747899 C T DSE Silent p.Y193Y 0.20 TCGA-IB-7651-01 6 116757772 116757772 C A DSE Missense_Mutation p.A714D 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.814) TCGA-IB-7651-01 6 116879157 116879157 T C FAM26D Missense_Mutation p.L100P 0.09 deleterious(0.01) probably_damaging(0.956) TCGA-IB-7651-01 6 116938420 116938420 C T RSPH4A Nonsense_Mutation p.Q212* 0.19 TCGA-IB-7651-01 6 116949186 116949186 G A RSPH4A Missense_Mutation p.R439K 0.16 tolerated(0.51) benign(0.077) TCGA-IB-7651-01 6 116968670 116968670 G T ZUFSP Missense_Mutation p.P474T 0.16 tolerated(0.05) benign(0.006) TCGA-IB-7651-01 6 116988313 116988313 G T ZUFSP Missense_Mutation p.P15T 0.17 deleterious(0.05) benign(0.042) TCGA-IB-7651-01 6 117002453 117002453 G A KPNA5 5'UTR 0.19 TCGA-IB-7651-01 6 117037383 117037383 T C KPNA5 Silent p.L220L 0.18 TCGA-IB-7651-01 6 117121752 117121752 G A GPRC6A Missense_Mutation p.L515F 0.19 tolerated(0.11) benign(0.021) TCGA-IB-7651-01 6 117199106 117199106 C T RFX6 Missense_Mutation p.T124M 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 117203536 117203536 C T RFX6 Missense_Mutation p.R171C 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 117203554 117203554 C A RFX6 Missense_Mutation p.L177I 0.20 tolerated(0.05) possibly_damaging(0.896) TCGA-IB-7651-01 6 117241504 117241504 T C RFX6 Missense_Mutation p.V405A 0.18 deleterious(0.02) benign(0.194) TCGA-IB-7651-01 6 117248279 117248279 G T RFX6 Nonsense_Mutation p.G659* 0.16 TCGA-IB-7651-01 6 117586967 117586967 C T VGLL2 Missense_Mutation p.P14L 0.17 deleterious(0) possibly_damaging(0.787) TCGA-IB-7651-01 6 117609778 117609778 C A ROS1 Missense_Mutation p.K2307N 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.701) TCGA-IB-7651-01 6 117704623 117704623 C T ROS1 Missense_Mutation p.V785M 0.16 deleterious(0.01) probably_damaging(0.977) TCGA-IB-7651-01 6 117709106 117709106 T G ROS1 Missense_Mutation p.Q617H 0.19 deleterious(0.04) possibly_damaging(0.868) TCGA-IB-7651-01 6 117718173 117718173 A G ROS1 Silent p.Y228Y 0.18 TCGA-IB-7651-01 6 117746757 117746757 C T ROS1 Nonsense_Mutation p.W21* 0.16 TCGA-IB-7651-01 6 117841037 117841037 A G DCBLD1 Silent p.V128V 0.20 TCGA-IB-7651-01 6 118015211 118015211 G A NUS1 Missense_Mutation p.A187T 0.18 tolerated(0.59) benign(0.002) TCGA-IB-7651-01 6 118475773 118475773 C T SLC35F1 Silent p.A113A 0.16 TCGA-IB-7651-01 6 118803068 118803068 T G CEP85L Missense_Mutation p.N543T 0.23 tolerated(0.57) benign(0.005) TCGA-IB-7651-01 6 118886795 118886795 G A CEP85L Missense_Mutation p.T309I 0.17 tolerated(0.09) possibly_damaging(0.888) TCGA-IB-7651-01 6 119337965 119337965 C A FAM184A Missense_Mutation p.A493S 0.15 tolerated(0.37) benign(0.3) TCGA-IB-7651-01 6 119338092 119338092 C A FAM184A Missense_Mutation p.K450N 0.18 deleterious(0.04) benign(0.105) TCGA-IB-7651-01 6 12124078 12124078 C T HIVEP1 Silent p.G1350G 0.05 TCGA-IB-7651-01 6 12125318 12125318 C T HIVEP1 Missense_Mutation p.R1764W 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 12161698 12161698 C T HIVEP1 Nonsense_Mutation p.R2172* 0.18 TCGA-IB-7651-01 6 121624817 121624817 C T TBC1D32 Silent p.P342P 0.21 TCGA-IB-7651-01 6 122753094 122753094 C T HSF2 Missense_Mutation p.A447V 0.13 deleterious(0.03) possibly_damaging(0.742) TCGA-IB-7651-01 6 12292728 12292728 G A EDN1 Nonsense_Mutation p.W73* 0.16 TCGA-IB-7651-01 6 123046319 123046319 G A PKIB Silent p.K79K 0.18 TCGA-IB-7651-01 6 123100870 123100870 C A FABP7 5'UTR 0.25 TCGA-IB-7651-01 6 123127404 123127404 G A SMPDL3A Missense_Mutation p.A316T 0.14 tolerated(0.6) benign(0.05) TCGA-IB-7651-01 6 125233387 125233387 C T RP11-510H23.1 RNA 0.19 TCGA-IB-7651-01 6 126080535 126080535 G A HEY2 Missense_Mutation p.G201S 0.16 tolerated(0.29) probably_damaging(0.93) TCGA-IB-7651-01 6 126332478 126332478 G A TRMT11 Silent p.E280E 0.21 TCGA-IB-7651-01 6 126342391 126342391 C T TRMT11 Missense_Mutation p.R409C 0.07 deleterious(0) benign(0.16) TCGA-IB-7651-01 6 126661536 126661536 T C CENPW Silent p.G39G 0.17 TCGA-IB-7651-01 6 127440424 127440424 C T RSPO3 Silent p.R29R 0.13 TCGA-IB-7651-01 6 127476492 127476492 G T RSPO3 Missense_Mutation p.Q181H 0.17 tolerated(0.21) possibly_damaging(0.838) TCGA-IB-7651-01 6 127608109 127608109 C T RNF146 Silent p.Y117Y 0.19 TCGA-IB-7651-01 6 127608756 127608756 G A RNF146 Missense_Mutation p.R333Q 0.17 tolerated(0.08) benign(0.002) TCGA-IB-7651-01 6 127611094 127611094 C T ECHDC1 Missense_Mutation p.E282K 0.19 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 6 127765193 127765193 G T KIAA0408 3'UTR 0.18 TCGA-IB-7651-01 6 127765336 127765336 C A KIAA0408 Missense_Mutation p.R668I 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 6 127771148 127771148 C A KIAA0408 Missense_Mutation p.G162V 0.19 tolerated(0.14) benign(0.086) TCGA-IB-7651-01 6 127771254 127771254 T A KIAA0408 Nonsense_Mutation p.K127* 0.19 TCGA-IB-7651-01 6 127775127 127775127 G T SOGA3 3'UTR 0.19 TCGA-IB-7651-01 6 127796553 127796553 C T SOGA3 Missense_Mutation p.R873H 0.16 deleterious(0.01) possibly_damaging(0.891) TCGA-IB-7651-01 6 127796902 127796902 C T SOGA3 Missense_Mutation p.A757T 0.20 tolerated(0.14) benign(0.126) TCGA-IB-7651-01 6 127834117 127834117 T G SOGA3 Missense_Mutation p.E468D 0.16 deleterious(0.01) benign(0.241) TCGA-IB-7651-01 6 127898440 127898440 C A C6orf58 Missense_Mutation p.P37H 0.16 deleterious(0.02) probably_damaging(0.997) TCGA-IB-7651-01 6 128134272 128134272 G A THEMIS Missense_Mutation p.P505L 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 128134756 128134756 G A THEMIS Missense_Mutation p.R344W 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 128176327 128176327 A C THEMIS Missense_Mutation p.I33S 0.17 deleterious(0) benign(0.394) TCGA-IB-7651-01 6 128505667 128505667 C T PTPRK Missense_Mutation p.E358K 0.17 deleterious(0.01) probably_damaging(0.975) TCGA-IB-7651-01 6 129511410 129511410 G A LAMA2 Missense_Mutation p.D510N 0.16 tolerated(0.41) benign(0.012) TCGA-IB-7651-01 6 129612818 129612818 T G LAMA2 Missense_Mutation p.C937G 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 129618972 129618972 C T LAMA2 Missense_Mutation p.A1000V 0.17 deleterious(0) possibly_damaging(0.883) TCGA-IB-7651-01 6 129634016 129634016 G A LAMA2 Missense_Mutation p.C1062Y 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 129687448 129687448 C T LAMA2 Missense_Mutation p.P1601L 0.18 tolerated(0.32) probably_damaging(0.988) TCGA-IB-7651-01 6 129687457 129687457 C T LAMA2 Missense_Mutation p.A1604V 0.20 tolerated(0.58) benign(0.053) TCGA-IB-7651-01 6 129781471 129781471 T C LAMA2 Splice_Site p.X2331_splice 0.18 TCGA-IB-7651-01 6 129950516 129950516 G A ARHGAP18 Silent p.G256G 0.21 TCGA-IB-7651-01 6 130497140 130497140 C T SAMD3 Missense_Mutation p.R223Q 0.20 tolerated(0.11) probably_damaging(0.936) TCGA-IB-7651-01 6 130505263 130505263 C T SAMD3 Silent p.E213E 0.13 TCGA-IB-7651-01 6 130762475 130762475 C A TMEM200A Missense_Mutation p.P303H 0.17 deleterious(0.01) probably_damaging(0.972) TCGA-IB-7651-01 6 131199340 131199340 A G EPB41L2 Silent p.S649S 0.18 TCGA-IB-7651-01 6 131276458 131276458 C T EPB41L2 Splice_Site p.X165_splice 0.16 TCGA-IB-7651-01 6 131486247 131486247 G T AKAP7 Missense_Mutation p.Q106H 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 131520710 131520710 G A AKAP7 Silent p.K233K 0.10 TCGA-IB-7651-01 6 131602681 131602681 G A AKAP7 Missense_Mutation p.G288R 0.15 tolerated(0.7) benign(0.037) TCGA-IB-7651-01 6 131919805 131919805 C T MED23 Missense_Mutation p.E773K 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-IB-7651-01 6 131923466 131923466 G A MED23 Missense_Mutation p.P663S 0.10 tolerated(0.1) probably_damaging(0.999) TCGA-IB-7651-01 6 131931290 131931290 C A MED23 Nonsense_Mutation p.G325* 0.16 TCGA-IB-7651-01 6 131997935 131997935 C T ENPP3 Missense_Mutation p.A311V 0.19 tolerated(0.15) possibly_damaging(0.493) TCGA-IB-7651-01 6 132031836 132031836 C A CTAGE9 Missense_Mutation p.V108L 0.18 tolerated(1) benign(0.005) TCGA-IB-7651-01 6 132043409 132043409 G A ENPP3 Missense_Mutation p.G537D 0.20 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 6 13206049 13206049 C T PHACTR1 Missense_Mutation p.P223S 0.20 tolerated(0.46) possibly_damaging(0.803) TCGA-IB-7651-01 6 13206106 13206106 C T PHACTR1 Missense_Mutation p.P242S 0.12 deleterious(0.05) possibly_damaging(0.803) TCGA-IB-7651-01 6 132785210 132785210 G A STX7 Silent p.S205S 0.15 TCGA-IB-7651-01 6 132873992 132873992 C T TAAR8 Missense_Mutation p.T54I 0.17 tolerated(1) benign(0.002) TCGA-IB-7651-01 6 132874819 132874819 T A TAAR8 Missense_Mutation p.L330I 0.18 deleterious(0.03) possibly_damaging(0.721) TCGA-IB-7651-01 6 132892109 132892109 T C TAAR6 Missense_Mutation p.Y217H 0.20 deleterious(0.02) possibly_damaging(0.739) TCGA-IB-7651-01 6 132909876 132909876 T G TAAR5 Missense_Mutation p.K317T 0.22 deleterious(0.02) benign(0.023) TCGA-IB-7651-01 6 132939158 132939158 C T TAAR2 Missense_Mutation p.A63T 0.20 tolerated(0.25) benign(0.134) TCGA-IB-7651-01 6 132966836 132966836 C T TAAR1 Missense_Mutation p.D103N 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 6 133004445 133004445 C T VNN1 Missense_Mutation p.R459H 0.23 tolerated(0.19) probably_damaging(0.912) TCGA-IB-7651-01 6 133044130 133044130 G A VNN3 3'UTR 0.18 TCGA-IB-7651-01 6 133047932 133047932 G A VNN3 Intron 0.18 TCGA-IB-7651-01 6 13316855 13316855 C T TBC1D7 Missense_Mutation p.R156Q 0.05 tolerated(0.09) benign(0.356) TCGA-IB-7651-01 6 13365177 13365177 C T GFOD1 Missense_Mutation p.R324H 0.22 tolerated(0.16) benign(0.093) TCGA-IB-7651-01 6 133836487 133836487 C T EYA4 Silent p.A510A 0.17 TCGA-IB-7651-01 6 133844298 133844298 A G EYA4 Missense_Mutation p.Y574C 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 134373675 134373675 C A SLC2A12 5'UTR 0.16 TCGA-IB-7651-01 6 134495755 134495755 G A SGK1 Intron 0.21 TCGA-IB-7651-01 6 134583014 134583014 A C SGK1 Intron 0.24 TCGA-IB-7651-01 6 134638743 134638743 G A SGK1 5'UTR 0.18 TCGA-IB-7651-01 6 135287592 135287592 T G HBS1L Missense_Mutation p.N640H 0.18 tolerated(0.07) probably_damaging(0.953) TCGA-IB-7651-01 6 135317999 135317999 T A HBS1L Missense_Mutation p.K294M 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 135375902 135375902 C T HBS1L 5'UTR 0.10 TCGA-IB-7651-01 6 135518322 135518322 C A MYB Missense_Mutation p.P476Q 0.16 deleterious(0) possibly_damaging(0.887) TCGA-IB-7651-01 6 135518382 135518382 G T MYB Missense_Mutation p.S496I 0.14 deleterious(0.02) benign(0.139) TCGA-IB-7651-01 6 135763781 135763781 G T AHI1 Missense_Mutation p.F617L 0.24 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 6 135778797 135778797 C T AHI1 Missense_Mutation p.R329Q 0.18 tolerated(0.8) benign(0.019) TCGA-IB-7651-01 6 136512832 136512832 C A PDE7B Missense_Mutation p.L403M 0.09 tolerated(0.35) possibly_damaging(0.746) TCGA-IB-7651-01 6 136593153 136593153 A C BCLAF1 Missense_Mutation p.F675V 0.11 tolerated(0.49) possibly_damaging(0.504) TCGA-IB-7651-01 6 136597377 136597377 C T BCLAF1 Missense_Mutation p.R429Q 0.09 tolerated(0.36) benign(0.417) TCGA-IB-7651-01 6 136665364 136665364 A G MAP7 3'UTR 0.16 TCGA-IB-7651-01 6 136693712 136693712 G A MAP7 Missense_Mutation p.S290L 0.20 tolerated(0.13) benign(0.005) TCGA-IB-7651-01 6 136704889 136704889 T C MAP7 Missense_Mutation p.N208S 0.20 deleterious(0.03) possibly_damaging(0.893) TCGA-IB-7651-01 6 137191085 137191085 G A PEX7 Missense_Mutation p.V231I 0.08 tolerated(0.47) benign(0.001) TCGA-IB-7651-01 6 137234651 137234651 C A PEX7 Missense_Mutation p.T320N 0.18 tolerated(0.12) benign(0.013) TCGA-IB-7651-01 6 137329757 137329757 G A IL20RA Nonsense_Mutation p.Q235* 0.19 TCGA-IB-7651-01 6 137482932 137482932 G A IL22RA2 5'UTR 0.18 TCGA-IB-7651-01 6 137519427 137519427 T C IFNGR1 Missense_Mutation p.E404G 0.17 tolerated(0.22) benign(0.076) TCGA-IB-7651-01 6 137814750 137814750 G A OLIG3 Silent p.G186G 0.10 TCGA-IB-7651-01 6 137814819 137814819 G A OLIG3 Silent p.T163T 0.11 TCGA-IB-7651-01 6 137815078 137815078 G A OLIG3 Missense_Mutation p.S77L 0.17 deleterious(0) benign(0.103) TCGA-IB-7651-01 6 137815239 137815239 C A OLIG3 Missense_Mutation p.R23S 0.19 tolerated(1) probably_damaging(0.95) TCGA-IB-7651-01 6 138200249 138200249 C A TNFAIP3 Missense_Mutation p.P556H 0.19 deleterious(0.03) benign(0.401) TCGA-IB-7651-01 6 138417631 138417631 G A PERP Missense_Mutation p.A72V 0.23 tolerated(0.23) benign(0.172) TCGA-IB-7651-01 6 138576683 138576683 C T KIAA1244 Missense_Mutation p.A294V 0.17 tolerated(0.6) benign(0.001) TCGA-IB-7651-01 6 138634943 138634943 A C KIAA1244 Missense_Mutation p.K1404N 0.11 tolerated(0.07) benign(0.018) TCGA-IB-7651-01 6 138655861 138655861 A G KIAA1244 Missense_Mutation p.T1960A 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-IB-7651-01 6 138656299 138656299 G T KIAA1244 Missense_Mutation p.V2106L 0.10 tolerated(0.94) benign(0.001) TCGA-IB-7651-01 6 138656314 138656314 G A KIAA1244 Missense_Mutation p.A2111T 0.13 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 6 1390839 1390839 G A FOXF2 Silent p.S219S 0.14 TCGA-IB-7651-01 6 1391220 1391220 G A FOXF2 Silent p.S346S 0.15 TCGA-IB-7651-01 6 139186158 139186158 A C ECT2L Missense_Mutation p.Q439H 0.19 tolerated(0.15) benign(0.004) TCGA-IB-7651-01 6 139237004 139237004 C A REPS1 Missense_Mutation p.V570F 0.19 tolerated(0.06) possibly_damaging(0.747) TCGA-IB-7651-01 6 139242254 139242254 G T REPS1 Missense_Mutation p.A449D 0.21 deleterious(0.01) probably_damaging(0.994) TCGA-IB-7651-01 6 139265101 139265101 G A REPS1 Missense_Mutation p.R269C 0.15 deleterious(0.03) benign(0.013) TCGA-IB-7651-01 6 139498117 139498117 G A HECA Missense_Mutation p.D503N 0.19 tolerated(0.05) possibly_damaging(0.807) TCGA-IB-7651-01 6 1395148 1395148 C T FOXF2 3'UTR 0.20 TCGA-IB-7651-01 6 139563819 139563819 T C TXLNB Silent p.P633P 0.17 TCGA-IB-7651-01 6 139564024 139564024 G A TXLNB Missense_Mutation p.A565V 0.08 deleterious_low_confidence(0.02) benign(0.017) TCGA-IB-7651-01 6 139598041 139598041 G T TXLNB Missense_Mutation p.L148I 0.20 tolerated(0.08) probably_damaging(0.98) TCGA-IB-7651-01 6 139694740 139694740 C T CITED2 Missense_Mutation p.M114I 0.20 deleterious(0) benign(0.258) TCGA-IB-7651-01 6 139695019 139695019 G A CITED2 Silent p.H21H 0.18 TCGA-IB-7651-01 6 142396962 142396962 C T NMBR Silent p.R332R 0.17 TCGA-IB-7651-01 6 142409766 142409766 C T NMBR Silent p.S10S 0.22 TCGA-IB-7651-01 6 142691376 142691377 - A GPR126 Frame_Shift_Ins p.S174Kfs*15 0.09 TCGA-IB-7651-01 6 143074447 143074447 G T HIVEP2 Missense_Mutation p.P2380T 0.17 tolerated_low_confidence(0.34) benign(0.005) TCGA-IB-7651-01 6 143081626 143081626 T C HIVEP2 Silent p.S1933S 0.08 TCGA-IB-7651-01 6 143082630 143082630 G A HIVEP2 Missense_Mutation p.S1864L 0.18 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 6 143096034 143096034 A C HIVEP2 5'UTR 0.09 TCGA-IB-7651-01 6 143753712 143753712 C T ADAT2 Missense_Mutation p.R130Q 0.16 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 6 143780343 143780343 C T PEX3 Silent p.C65C 0.20 TCGA-IB-7651-01 6 143811744 143811744 G A FUCA2 3'Flank 0.15 TCGA-IB-7651-01 6 144086760 144086760 C A PHACTR2 Missense_Mutation p.L353I 0.19 tolerated_low_confidence(0.34) benign(0.192) TCGA-IB-7651-01 6 144086912 144086912 T C PHACTR2 Silent p.S403S 0.18 TCGA-IB-7651-01 6 144416556 144416556 T C SF3B5 Missense_Mutation p.T27A 0.18 deleterious(0.02) benign(0.009) TCGA-IB-7651-01 6 144508031 144508031 C T STX11 Silent p.I89I 0.19 TCGA-IB-7651-01 6 144508673 144508673 C T STX11 3'UTR 0.20 TCGA-IB-7651-01 6 144758737 144758737 G A UTRN Missense_Mutation p.V366M 0.11 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 144758755 144758755 G A UTRN Missense_Mutation p.A372T 0.14 tolerated(0.05) probably_damaging(1) TCGA-IB-7651-01 6 144768443 144768443 C T UTRN Nonsense_Mutation p.R571* 0.11 TCGA-IB-7651-01 6 144780066 144780066 G A UTRN Silent p.K815K 0.19 TCGA-IB-7651-01 6 145075930 145075930 C A UTRN Silent p.L2810L 0.20 TCGA-IB-7651-01 6 145948355 145948355 G T EPM2A 3'UTR 0.19 TCGA-IB-7651-01 6 146214385 146214385 C T SHPRH Missense_Mutation p.A1614T 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 146214434 146214434 A G SHPRH Silent p.T1597T 0.19 TCGA-IB-7651-01 6 146264761 146264761 T G SHPRH Missense_Mutation p.K586Q 0.19 tolerated_low_confidence(0.35) benign(0.009) TCGA-IB-7651-01 6 146275891 146275891 C A SHPRH Missense_Mutation p.G190W 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.664) TCGA-IB-7651-01 6 146350505 146350505 G T GRM1 5'UTR 0.12 TCGA-IB-7651-01 6 146350781 146350781 G T GRM1 Missense_Mutation p.G43V 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 6 146625805 146625805 G A GRM1 Missense_Mutation p.G337R 0.14 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 6 146678707 146678707 C T GRM1 Silent p.D493D 0.19 TCGA-IB-7651-01 6 146720739 146720739 T G GRM1 Missense_Mutation p.V855G 0.20 deleterious(0.01) benign(0.206) TCGA-IB-7651-01 6 146720792 146720792 C T GRM1 Missense_Mutation p.L873F 0.15 tolerated(0.11) benign(0.02) TCGA-IB-7651-01 6 146865053 146865053 G A RAB32 Missense_Mutation p.A16T 0.24 tolerated(0.55) unknown(0) TCGA-IB-7651-01 6 147124144 147124144 A G ADGB Intron 0.18 TCGA-IB-7651-01 6 147560343 147560343 A G STXBP5 Missense_Mutation p.H123R 0.22 deleterious(0) benign(0.008) TCGA-IB-7651-01 6 147581831 147581831 T C STXBP5 Missense_Mutation p.V171A 0.20 deleterious(0.04) benign(0.04) TCGA-IB-7651-01 6 147632647 147632647 G A STXBP5 Missense_Mutation p.D377N 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 147636794 147636794 C A STXBP5 Missense_Mutation p.L516M 0.19 deleterious(0.03) probably_damaging(0.913) TCGA-IB-7651-01 6 147680400 147680400 T C STXBP5 Missense_Mutation p.L829P 0.12 deleterious(0) possibly_damaging(0.883) TCGA-IB-7651-01 6 147684474 147684474 C T STXBP5 Missense_Mutation p.T850I 0.18 deleterious(0.01) benign(0.382) TCGA-IB-7651-01 6 147694892 147694892 C T STXBP5 Missense_Mutation p.P1036L 0.17 tolerated(0.05) benign(0.215) TCGA-IB-7651-01 6 148808758 148808758 A G SASH1 Silent p.E212E 0.17 TCGA-IB-7651-01 6 148852683 148852683 C A SASH1 Missense_Mutation p.P484T 0.06 deleterious(0.04) probably_damaging(0.909) TCGA-IB-7651-01 6 148852764 148852764 C A SASH1 Missense_Mutation p.L511I 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 6 148865211 148865211 C T SASH1 Missense_Mutation p.P869S 0.18 tolerated_low_confidence(0.1) benign(0.021) TCGA-IB-7651-01 6 148865907 148865907 C A SASH1 Missense_Mutation p.L1101M 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 6 149699842 149699842 C A TAB2 Missense_Mutation p.P264H 0.17 tolerated(0.07) benign(0.243) TCGA-IB-7651-01 6 149826437 149826437 T C PPIL4 3'UTR 0.21 TCGA-IB-7651-01 6 149901847 149901847 A G GINM1 Silent p.P235P 0.19 TCGA-IB-7651-01 6 149982884 149982884 C T LATS1 Missense_Mutation p.R1125H 0.14 tolerated_low_confidence(0.1) benign(0.002) TCGA-IB-7651-01 6 150023290 150023290 G A LATS1 5'UTR 0.19 TCGA-IB-7651-01 6 150114741 150114741 C T PCMT1 Silent p.D176D 0.18 TCGA-IB-7651-01 6 150147370 150147370 C T LRP11 Intron 0.19 TCGA-IB-7651-01 6 150343282 150343282 A C RAET1L Missense_Mutation p.F61L 0.17 deleterious(0.02) possibly_damaging(0.791) TCGA-IB-7651-01 6 150715331 150715331 C T IYD Silent p.V209V 0.14 TCGA-IB-7651-01 6 151125824 151125824 G A PLEKHG1 Missense_Mutation p.A287T 0.21 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 6 151139352 151139352 C T PLEKHG1 Missense_Mutation p.H438Y 0.13 tolerated(0.25) benign(0.009) TCGA-IB-7651-01 6 151144795 151144795 G T PLEKHG1 Missense_Mutation p.A485S 0.16 tolerated(0.7) benign(0.007) TCGA-IB-7651-01 6 151161984 151161984 G T PLEKHG1 Missense_Mutation p.Q1370H 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 6 151281474 151281474 G A MTHFD1L Missense_Mutation p.A623T 0.18 tolerated(0.39) benign(0.005) TCGA-IB-7651-01 6 151672017 151672017 G A AKAP12 Missense_Mutation p.A831T 0.16 tolerated(1) benign(0.003) TCGA-IB-7651-01 6 151672727 151672727 G A AKAP12 Silent p.Q1067Q 0.20 TCGA-IB-7651-01 6 151687214 151687214 G A ZBTB2 Silent p.I329I 0.17 TCGA-IB-7651-01 6 151687588 151687588 C A ZBTB2 Nonsense_Mutation p.E205* 0.15 TCGA-IB-7651-01 6 151726264 151726264 G A RMND1 3'UTR 0.22 TCGA-IB-7651-01 6 151766865 151766865 G T RMND1 Missense_Mutation p.L28I 0.18 tolerated_low_confidence(0.33) benign(0.031) TCGA-IB-7651-01 6 151907104 151907104 C T CCDC170 Silent p.L391L 0.26 TCGA-IB-7651-01 6 152415580 152415580 G T ESR1 Missense_Mutation p.R477L 0.17 tolerated(0.35) benign(0.006) TCGA-IB-7651-01 6 152457923 152457923 C T SYNE1 Missense_Mutation p.A8497T 0.16 probably_damaging(0.984) TCGA-IB-7651-01 6 152462355 152462355 G A SYNE1 Missense_Mutation p.T8410I 0.17 probably_damaging(0.92) TCGA-IB-7651-01 6 152466669 152466669 G T SYNE1 Intron 0.22 TCGA-IB-7651-01 6 152476174 152476174 G A SYNE1 Silent p.I7994I 0.05 TCGA-IB-7651-01 6 152477184 152477184 G T SYNE1 Missense_Mutation p.L7947I 0.17 probably_damaging(0.996) TCGA-IB-7651-01 6 152485435 152485435 C T SYNE1 Missense_Mutation p.V7885I 0.20 benign(0.081) TCGA-IB-7651-01 6 152497616 152497616 C A SYNE1 Missense_Mutation p.S7847I 0.15 probably_damaging(0.999) TCGA-IB-7651-01 6 152577893 152577893 C A SYNE1 Missense_Mutation p.S6327I 0.07 possibly_damaging(0.653) TCGA-IB-7651-01 6 152642447 152642447 G T SYNE1 Missense_Mutation p.L5388I 0.18 benign(0.242) TCGA-IB-7651-01 6 152647525 152647525 C T SYNE1 Missense_Mutation p.G5067S 0.20 benign(0.322) TCGA-IB-7651-01 6 152652132 152652132 G T SYNE1 Missense_Mutation p.S4563Y 0.19 probably_damaging(0.981) TCGA-IB-7651-01 6 152652508 152652508 T C SYNE1 Missense_Mutation p.S4438G 0.20 benign(0.006) TCGA-IB-7651-01 6 152658135 152658135 G A SYNE1 Silent p.V4123V 0.17 TCGA-IB-7651-01 6 152676008 152676008 G A SYNE1 Missense_Mutation p.A3571V 0.18 benign(0.004) TCGA-IB-7651-01 6 152683354 152683354 C A SYNE1 Missense_Mutation p.R3417M 0.17 benign(0.049) TCGA-IB-7651-01 6 152694260 152694260 G A SYNE1 Missense_Mutation p.A3140V 0.20 possibly_damaging(0.558) TCGA-IB-7651-01 6 152697632 152697632 G A SYNE1 Nonsense_Mutation p.R3070* 0.16 TCGA-IB-7651-01 6 152706910 152706910 C T SYNE1 Missense_Mutation p.E2851K 0.16 probably_damaging(0.995) TCGA-IB-7651-01 6 152737755 152737755 G A SYNE1 Silent p.I1939I 0.17 TCGA-IB-7651-01 6 152738006 152738006 C T SYNE1 Missense_Mutation p.A1856T 0.20 probably_damaging(0.996) TCGA-IB-7651-01 6 152749345 152749345 C A SYNE1 Missense_Mutation p.W1657C 0.14 probably_damaging(0.999) TCGA-IB-7651-01 6 152777048 152777048 C A SYNE1 Missense_Mutation p.Q900H 0.10 benign(0.009) TCGA-IB-7651-01 6 153296711 153296711 T C FBXO5 Missense_Mutation p.D50G 0.20 tolerated(0.07) benign(0.127) TCGA-IB-7651-01 6 153315696 153315696 G A MTRF1L Silent p.R213R 0.18 TCGA-IB-7651-01 6 153365061 153365061 A C RGS17 Missense_Mutation p.C31W 0.17 tolerated(0.06) probably_damaging(0.997) TCGA-IB-7651-01 6 154412127 154412127 G T OPRM1 Missense_Mutation p.W321C 0.17 tolerated(0.19) probably_damaging(0.936) TCGA-IB-7651-01 6 154439911 154439911 G A OPRM1 3'Flank 0.21 TCGA-IB-7651-01 6 15468794 15468794 G T JARID2 Missense_Mutation p.S172I 0.14 deleterious(0) benign(0.432) TCGA-IB-7651-01 6 154727608 154727608 C T CNKSR3 Silent p.T516T 0.16 TCGA-IB-7651-01 6 154743640 154743640 C A CNKSR3 Missense_Mutation p.Q315H 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 6 15497082 15497082 C T JARID2 Silent p.A542A 0.14 TCGA-IB-7651-01 6 15524592 15524592 C T DTNBP1 Intron 0.19 TCGA-IB-7651-01 6 155572061 155572061 G A TIAM2 Silent p.S1322S 0.18 TCGA-IB-7651-01 6 155752006 155752006 G A NOX3 Nonsense_Mutation p.R288* 0.08 TCGA-IB-7651-01 6 157495196 157495196 C T ARID1B Missense_Mutation p.P1027L 0.12 possibly_damaging(0.476) TCGA-IB-7651-01 6 157505566 157505566 C A ARID1B Missense_Mutation p.P1183T 0.17 probably_damaging(0.999) TCGA-IB-7651-01 6 157522258 157522258 C T ARID1B Silent p.S1510S 0.18 TCGA-IB-7651-01 6 157525014 157525014 T C ARID1B Missense_Mutation p.W1637R 0.19 probably_damaging(0.997) TCGA-IB-7651-01 6 157528312 157528312 T C ARID1B Missense_Mutation p.W2013R 0.17 probably_damaging(0.997) TCGA-IB-7651-01 6 158349734 158349734 C T SNX9 Missense_Mutation p.P430S 0.18 tolerated(0.25) possibly_damaging(0.483) TCGA-IB-7651-01 6 158495692 158495692 C T SYNJ2 Silent p.V738V 0.23 TCGA-IB-7651-01 6 158516726 158516726 C T SYNJ2 Missense_Mutation p.A1274V 0.19 tolerated_low_confidence(0.11) benign(0.05) TCGA-IB-7651-01 6 158549279 158549279 G A SERAC1 Silent p.I292I 0.18 TCGA-IB-7651-01 6 158564142 158564142 C A SERAC1 Missense_Mutation p.Q228H 0.19 deleterious(0) benign(0.031) TCGA-IB-7651-01 6 158569911 158569911 C T SERAC1 Missense_Mutation p.R114Q 0.16 tolerated(0.38) benign(0.004) TCGA-IB-7651-01 6 158579383 158579383 C T SERAC1 Missense_Mutation p.A5T 0.16 tolerated_low_confidence(0.09) benign(0.167) TCGA-IB-7651-01 6 158734978 158734978 A G TULP4 5'UTR 0.19 TCGA-IB-7651-01 6 158735144 158735144 G A TULP4 Silent p.E32E 0.20 TCGA-IB-7651-01 6 158870179 158870179 C T TULP4 Missense_Mutation p.T232M 0.13 deleterious(0.04) probably_damaging(0.98) TCGA-IB-7651-01 6 158900854 158900854 C T TULP4 Silent p.Y366Y 0.17 TCGA-IB-7651-01 6 158923474 158923474 C T TULP4 Missense_Mutation p.L927F 0.16 deleterious_low_confidence(0) benign(0.221) TCGA-IB-7651-01 6 159084345 159084345 C T SYTL3 Silent p.R15R 0.09 TCGA-IB-7651-01 6 159178308 159178308 G A SYTL3 Silent p.T401T 0.18 TCGA-IB-7651-01 6 159178373 159178373 G A SYTL3 Missense_Mutation p.S423N 0.06 tolerated(0.54) benign(0.005) TCGA-IB-7651-01 6 159263024 159263024 C T OSTCP1 RNA 0.16 TCGA-IB-7651-01 6 159456845 159456845 G A TAGAP 3'UTR 0.16 TCGA-IB-7651-01 6 159456869 159456869 G A TAGAP Missense_Mutation p.S729L 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 159456924 159456924 G A TAGAP Nonsense_Mutation p.R711* 0.20 TCGA-IB-7651-01 6 159457286 159457286 G T TAGAP Missense_Mutation p.P590H 0.17 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 6 159460010 159460010 A G TAGAP Intron 0.13 TCGA-IB-7651-01 6 159642721 159642721 G T FNDC1 Missense_Mutation p.K253N 0.21 deleterious(0) unknown(0) TCGA-IB-7651-01 6 159644586 159644586 G A FNDC1 Missense_Mutation p.D265N 0.16 deleterious(0.04) unknown(0) TCGA-IB-7651-01 6 159647514 159647514 C T FNDC1 Missense_Mutation p.T361I 0.13 deleterious(0.05) unknown(0) TCGA-IB-7651-01 6 159653575 159653575 G A FNDC1 Silent p.P677P 0.19 TCGA-IB-7651-01 6 159654115 159654115 C A FNDC1 Silent p.A857A 0.25 TCGA-IB-7651-01 6 159654596 159654596 G A FNDC1 Missense_Mutation p.G1018R 0.21 tolerated_low_confidence(0.09) unknown(0) TCGA-IB-7651-01 6 159672509 159672509 C T FNDC1 Silent p.C1670C 0.14 TCGA-IB-7651-01 6 159687142 159687142 G A FNDC1 Missense_Mutation p.A1771T 0.10 tolerated(0.69) benign(0.087) TCGA-IB-7651-01 6 160206673 160206673 C T TCP1 Intron 0.19 TCGA-IB-7651-01 6 160225117 160225117 C T PNLDC1 Silent p.N112N 0.05 TCGA-IB-7651-01 6 160238156 160238156 C T PNLDC1 Missense_Mutation p.A366V 0.09 deleterious(0) possibly_damaging(0.69) TCGA-IB-7651-01 6 160455500 160455500 A C IGF2R Missense_Mutation p.S421R 0.07 deleterious(0) benign(0.303) TCGA-IB-7651-01 6 160480049 160480049 C T IGF2R Missense_Mutation p.P1004S 0.16 tolerated(0.76) benign(0.016) TCGA-IB-7651-01 6 160494321 160494321 G A IGF2R Silent p.Q1589Q 0.08 TCGA-IB-7651-01 6 160497015 160497015 G A IGF2R Missense_Mutation p.R1768K 0.18 tolerated(0.09) benign(0.219) TCGA-IB-7651-01 6 160679678 160679678 C T SLC22A2 Missense_Mutation p.V38M 0.04 deleterious(0.01) benign(0.414) TCGA-IB-7651-01 6 160858179 160858179 C T SLC22A3 Silent p.L408L 0.18 TCGA-IB-7651-01 6 160858187 160858187 C T SLC22A3 Missense_Mutation p.A411V 0.17 deleterious(0.04) possibly_damaging(0.544) TCGA-IB-7651-01 6 160875367 160875367 C A SLC22A3 3'Flank 0.16 TCGA-IB-7651-01 6 160953597 160953597 G A LPA Missense_Mutation p.A1976V 0.11 deleterious(0.01) benign(0.162) TCGA-IB-7651-01 6 161012086 161012086 G T LPA Missense_Mutation p.P1226H 0.21 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 6 161015074 161015074 G A LPA Missense_Mutation p.T1182I 0.18 tolerated(0.13) probably_damaging(0.997) TCGA-IB-7651-01 6 161056225 161056225 G A LPA Silent p.D335D 0.01 TCGA-IB-7651-01 6 1610993 1610993 T C FOXC1 Missense_Mutation p.Y105H 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 6 161470912 161470912 G A MAP3K4 Silent p.Q536Q 0.19 TCGA-IB-7651-01 6 161518151 161518151 G A MAP3K4 Missense_Mutation p.R1156Q 0.18 deleterious(0.04) probably_damaging(0.991) TCGA-IB-7651-01 6 161560502 161560502 T C AGPAT4 Missense_Mutation p.S332G 0.17 deleterious(0) possibly_damaging(0.881) TCGA-IB-7651-01 6 161575237 161575237 G A AGPAT4 Missense_Mutation p.R152C 0.18 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 6 161653106 161653106 C T AGPAT4 Missense_Mutation p.R47Q 0.18 deleterious(0) benign(0.341) TCGA-IB-7651-01 6 162394349 162394349 G A PARK2 Missense_Mutation p.T240M 0.22 deleterious(0) benign(0.38) TCGA-IB-7651-01 6 16254937 16254937 C T GMPR Missense_Mutation p.R146C 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 6 162622162 162622162 C T PARK2 Splice_Site p.X178_splice 0.19 TCGA-IB-7651-01 6 16326701 16326701 G A ATXN1 Missense_Mutation p.T614I 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 6 163510351 163510351 T G PACRG Missense_Mutation p.L175R 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 6 163836318 163836318 G A QKI Silent p.L31L 0.17 TCGA-IB-7651-01 6 163987883 163987883 T G QKI Intron 0.22 TCGA-IB-7651-01 6 165706729 165706729 C A C6orf118 Intron 0.17 TCGA-IB-7651-01 6 165715084 165715084 C T C6orf118 Missense_Mutation p.A243T 0.16 tolerated(0.65) benign(0.002) TCGA-IB-7651-01 6 165715502 165715502 C T C6orf118 Silent p.A103A 0.18 TCGA-IB-7651-01 6 165715758 165715758 G A C6orf118 Missense_Mutation p.T18M 0.17 deleterious_low_confidence(0.04) unknown(0) TCGA-IB-7651-01 6 165749634 165749634 C T PDE10A Missense_Mutation p.E749K 0.14 tolerated(0.93) benign(0.003) TCGA-IB-7651-01 6 165792768 165792768 C A PDE10A Missense_Mutation p.D634Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 6 165809938 165809938 C T PDE10A Missense_Mutation p.R430K 0.17 tolerated(0.71) possibly_damaging(0.784) TCGA-IB-7651-01 6 166580185 166580185 G A T Silent p.C122C 0.06 TCGA-IB-7651-01 6 166827296 166827296 C T RPS6KA2 Missense_Mutation p.V696M 0.12 tolerated(0.14) benign(0.029) TCGA-IB-7651-01 6 166864717 166864717 A C RPS6KA2 Silent p.S368S 0.17 TCGA-IB-7651-01 6 166902391 166902391 C T RPS6KA2 Silent p.P287P 0.14 TCGA-IB-7651-01 6 166912074 166912074 G A RPS6KA2 Silent p.I231I 0.19 TCGA-IB-7651-01 6 167344532 167344532 C A RNASET2 Missense_Mutation p.Q189H 0.19 deleterious(0) probably_damaging(0.928) TCGA-IB-7651-01 6 167416734 167416734 C T FGFR1OP Silent p.D70D 0.12 TCGA-IB-7651-01 6 167550300 167550300 C T CCR6 Silent p.S194S 0.20 TCGA-IB-7651-01 6 167794660 167794660 G A TCP10 Silent p.A76A 0.15 TCGA-IB-7651-01 6 168226615 168226615 G A MLLT4 5'Flank 0.18 TCGA-IB-7651-01 6 168312006 168312006 G T MLLT4 Missense_Mutation p.S625I 0.14 tolerated(0.09) probably_damaging(0.999) TCGA-IB-7651-01 6 168352003 168352003 C A MLLT4 Silent p.T1316T 0.20 TCGA-IB-7651-01 6 168363200 168363200 C T MLLT4 Missense_Mutation p.R1632C 0.16 deleterious_low_confidence(0) unknown(0) TCGA-IB-7651-01 6 168461613 168461613 G A FRMD1 Silent p.A390A 0.09 TCGA-IB-7651-01 6 168465674 168465674 G A FRMD1 Silent p.C175C 0.18 TCGA-IB-7651-01 6 168949822 168949822 T C SMOC2 Silent p.R203R 0.16 TCGA-IB-7651-01 6 169623504 169623504 A C THBS2 Missense_Mutation p.V947G 0.15 deleterious(0) probably_damaging(0.942) TCGA-IB-7651-01 6 169625342 169625342 C T THBS2 Missense_Mutation p.G891S 0.15 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 6 169632164 169632164 C T THBS2 Missense_Mutation p.G688R 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 169632237 169632237 C T THBS2 Silent p.A663A 0.20 TCGA-IB-7651-01 6 169634946 169634946 C T THBS2 Missense_Mutation p.G512S 0.19 deleterious(0.04) benign(0.247) TCGA-IB-7651-01 6 170058377 170058377 C T WDR27 Missense_Mutation p.R466Q 0.18 tolerated(0.98) benign(0.003) TCGA-IB-7651-01 6 170102799 170102799 G A C6orf120 Missense_Mutation p.A82T 0.23 tolerated(0.08) benign(0.08) TCGA-IB-7651-01 6 170103014 170103014 C T C6orf120 Silent p.G153G 0.15 TCGA-IB-7651-01 6 170104118 170104118 T G PHF10 Missense_Mutation p.K493T 0.18 deleterious_low_confidence(0.01) benign(0.444) TCGA-IB-7651-01 6 170105886 170105886 C A C6orf120 3'UTR 0.18 TCGA-IB-7651-01 6 170118947 170118947 A G PHF10 Missense_Mutation p.Y88H 0.17 tolerated(0.09) possibly_damaging(0.907) TCGA-IB-7651-01 6 170181441 170181441 C A ERMARD Silent p.I623I 0.24 TCGA-IB-7651-01 6 170592486 170592486 G A DLL1 Silent p.A627A 0.17 TCGA-IB-7651-01 6 170592876 170592876 G A DLL1 Silent p.H497H 0.19 TCGA-IB-7651-01 6 170626923 170626923 G T FAM120B Missense_Mutation p.G149C 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 170628015 170628015 G A FAM120B Missense_Mutation p.D513N 0.15 tolerated_low_confidence(0.15) possibly_damaging(0.674) TCGA-IB-7651-01 6 170881346 170881346 C T TBP Missense_Mutation p.T338M 0.16 deleterious(0.03) benign(0.026) TCGA-IB-7651-01 6 17426835 17426835 G A CAP2 Missense_Mutation p.V46M 0.17 deleterious(0.03) benign(0.407) TCGA-IB-7651-01 6 17626368 17626368 C G NUP153 Missense_Mutation p.S1191T 0.19 tolerated(0.09) benign(0.023) TCGA-IB-7651-01 6 17661976 17661976 C A NUP153 Missense_Mutation p.A435S 0.19 tolerated(0.5) benign(0.204) TCGA-IB-7651-01 6 17688685 17688685 C A NUP153 Missense_Mutation p.E92D 0.08 tolerated(0.34) benign(0.014) TCGA-IB-7651-01 6 17777518 17777518 T A KIF13A Missense_Mutation p.N1387I 0.08 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 6 17788054 17788054 C T KIF13A Missense_Mutation p.R1105Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 6 17826038 17826038 C T KIF13A Missense_Mutation p.A583T 0.19 deleterious(0) possibly_damaging(0.752) TCGA-IB-7651-01 6 17850613 17850613 G A KIF13A Missense_Mutation p.R220C 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 18122317 18122317 A C NHLRC1 Missense_Mutation p.I174S 0.18 deleterious(0) possibly_damaging(0.682) TCGA-IB-7651-01 6 18197423 18197423 G A KDM1B Missense_Mutation p.V237M 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-IB-7651-01 6 18208416 18208416 C T KDM1B Silent p.G383G 0.17 TCGA-IB-7651-01 6 18215253 18215253 C A KDM1B Missense_Mutation p.L477M 0.17 deleterious(0) unknown(0) TCGA-IB-7651-01 6 18215342 18215342 G T KDM1B Silent p.R506R 0.15 TCGA-IB-7651-01 6 18225824 18225824 G A DEK 3'UTR 0.18 TCGA-IB-7651-01 6 18439941 18439941 G A RNF144B Silent p.Q99Q 0.16 TCGA-IB-7651-01 6 20102597 20102597 A T MBOAT1 Missense_Mutation p.F470I 0.19 tolerated(0.7) benign(0.002) TCGA-IB-7651-01 6 20402509 20402509 G A E2F3 Missense_Mutation p.A16T 0.10 tolerated_low_confidence(0.13) possibly_damaging(0.499) TCGA-IB-7651-01 6 20546630 20546630 G A CDKAL1 Missense_Mutation p.V17M 0.20 deleterious(0.04) benign(0.053) TCGA-IB-7651-01 6 20781393 20781393 C T CDKAL1 Silent p.L179L 0.17 TCGA-IB-7651-01 6 22290448 22290448 C T PRL Silent p.E149E 0.15 TCGA-IB-7651-01 6 24291177 24291177 C T DCDC2 Silent p.T229T 0.17 TCGA-IB-7651-01 6 24429337 24429337 C T GPLD1 Missense_Mutation p.V816I 0.15 tolerated(0.11) benign(0.016) TCGA-IB-7651-01 6 24515440 24515440 C T ALDH5A1 Missense_Mutation p.P271S 0.15 tolerated(0.48) probably_damaging(0.968) TCGA-IB-7651-01 6 24572854 24572854 C A KIAA0319 Missense_Mutation p.D603Y 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 24651141 24651141 C T TDP2 Missense_Mutation p.A322T 0.20 tolerated(0.44) benign(0.013) TCGA-IB-7651-01 6 24777457 24777457 T G GMNN 5'UTR 0.10 TCGA-IB-7651-01 6 25450163 25450163 C T LRRC16A Missense_Mutation p.R137C 0.18 deleterious(0) possibly_damaging(0.832) TCGA-IB-7651-01 6 25466164 25466164 G T LRRC16A Missense_Mutation p.K226N 0.18 deleterious(0) benign(0.424) TCGA-IB-7651-01 6 25488745 25488745 C T LRRC16A Missense_Mutation p.P333S 0.18 tolerated(0.19) benign(0.012) TCGA-IB-7651-01 6 25495362 25495362 C T LRRC16A Missense_Mutation p.S415F 0.14 deleterious(0.03) possibly_damaging(0.841) TCGA-IB-7651-01 6 25515950 25515950 C A LRRC16A Silent p.V560V 0.19 TCGA-IB-7651-01 6 25619939 25619939 C T LRRC16A 3'UTR 0.15 TCGA-IB-7651-01 6 25652562 25652562 C T SCGN 5'UTR 0.13 TCGA-IB-7651-01 6 25670258 25670258 A T SCGN Missense_Mutation p.K142I 0.17 deleterious(0.02) benign(0.079) TCGA-IB-7651-01 6 25726479 25726479 C T HIST1H2AA Missense_Mutation p.E93K 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IB-7651-01 6 25769379 25769379 G A SLC17A4 Silent p.Q86Q 0.18 TCGA-IB-7651-01 6 25771219 25771219 C T SLC17A4 Missense_Mutation p.P229S 0.06 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 6 25811866 25811866 C A SLC17A1 Nonsense_Mutation p.G344* 0.16 TCGA-IB-7651-01 6 25851014 25851014 T G SLC17A3 Missense_Mutation p.E268D 0.17 tolerated(0.09) benign(0.097) TCGA-IB-7651-01 6 25862211 25862211 C T SLC17A3 Missense_Mutation p.G117D 0.19 deleterious(0) possibly_damaging(0.593) TCGA-IB-7651-01 6 25862558 25862558 C A SLC17A3 Missense_Mutation p.S69I 0.06 deleterious(0.01) possibly_damaging(0.835) TCGA-IB-7651-01 6 25913550 25913550 G A SLC17A2 Silent p.A428A 0.16 TCGA-IB-7651-01 6 25915985 25915985 G A SLC17A2 Nonsense_Mutation p.R348* 0.18 TCGA-IB-7651-01 6 25972122 25972122 A C TRIM38 Missense_Mutation p.K178T 0.19 tolerated(0.08) benign(0.285) TCGA-IB-7651-01 6 26017371 26017371 G T HIST1H1A Missense_Mutation p.A197D 0.17 deleterious(0.02) unknown(0) TCGA-IB-7651-01 6 26031956 26031956 G A HIST1H3B Silent p.C111C 0.23 TCGA-IB-7651-01 6 26056411 26056411 A G HIST1H1C Silent p.L82L 0.19 TCGA-IB-7651-01 6 26108003 26108003 C T HIST1H1T Missense_Mutation p.G107S 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 26108109 26108109 G A HIST1H1T Silent p.A71A 0.21 TCGA-IB-7651-01 6 26157183 26157183 G A HIST1H1E Missense_Mutation p.A189T 0.15 deleterious(0.01) unknown(0) TCGA-IB-7651-01 6 26189278 26189278 C A HIST1H4D Missense_Mutation p.K9N 0.12 tolerated_low_confidence(0.08) benign(0.067) TCGA-IB-7651-01 6 26200158 26200158 C A HIST1H2BF Missense_Mutation p.S124R 0.16 deleterious_low_confidence(0.01) probably_damaging(0.946) TCGA-IB-7651-01 6 26216523 26216523 T C HIST1H2BG Missense_Mutation p.K117E 0.18 deleterious_low_confidence(0.01) benign(0.034) TCGA-IB-7651-01 6 26216590 26216590 C T HIST1H2BG Silent p.E94E 0.18 TCGA-IB-7651-01 6 26217493 26217493 T G HIST1H2AE Silent p.L97L 0.18 TCGA-IB-7651-01 6 26234584 26234584 G A HIST1H1D Missense_Mutation p.A193V 0.21 tolerated(0.06) unknown(0) TCGA-IB-7651-01 6 26234693 26234693 T C HIST1H1D Missense_Mutation p.K157E 0.18 deleterious(0.02) unknown(0) TCGA-IB-7651-01 6 26247128 26247128 A T HIST1H4G Missense_Mutation p.N26K 0.19 deleterious(0) possibly_damaging(0.904) TCGA-IB-7651-01 6 26252006 26252006 A G HIST1H2BH Missense_Mutation p.Y43C 0.18 deleterious_low_confidence(0) benign(0.279) TCGA-IB-7651-01 6 26273462 26273462 C T HIST1H2BI Missense_Mutation p.R87C 0.21 tolerated_low_confidence(0.11) benign(0.06) TCGA-IB-7651-01 6 26370581 26370581 G T BTN3A2 Missense_Mutation p.K155N 0.11 deleterious(0.04) possibly_damaging(0.776) TCGA-IB-7651-01 6 26393550 26393550 C T BTN2A2 3'UTR 0.23 TCGA-IB-7651-01 6 26409847 26409847 T C BTN3A1 Missense_Mutation p.Y268H 0.17 tolerated(0.18) possibly_damaging(0.646) TCGA-IB-7651-01 6 26413464 26413464 G A BTN3A1 Silent p.V362V 0.17 TCGA-IB-7651-01 6 26468158 26468158 C A BTN2A1 Intron 0.16 TCGA-IB-7651-01 6 26505184 26505184 A C BTN1A1 Missense_Mutation p.Q153H 0.18 deleterious(0) possibly_damaging(0.447) TCGA-IB-7651-01 6 26507040 26507040 G A BTN1A1 Missense_Mutation p.R280K 0.17 tolerated(1) benign(0.001) TCGA-IB-7651-01 6 26638842 26638842 C T ZNF322 5'UTR 0.12 TCGA-IB-7651-01 6 2679691 2679691 C T MYLK4 Intron 0.19 TCGA-IB-7651-01 6 2685594 2685594 C T MYLK4 Missense_Mutation p.A161T 0.17 tolerated(0.19) benign(0.008) TCGA-IB-7651-01 6 27100394 27100394 G T HIST1H2BJ Missense_Mutation p.L46M 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.786) TCGA-IB-7651-01 6 27218821 27218821 T C PRSS16 Missense_Mutation p.F198L 0.15 tolerated(0.13) benign(0.033) TCGA-IB-7651-01 6 27219637 27219637 G T PRSS16 Missense_Mutation p.G276C 0.18 deleterious(0.03) benign(0.134) TCGA-IB-7651-01 6 27219749 27219749 G A PRSS16 Missense_Mutation p.G313E 0.23 tolerated(0.33) benign(0.006) TCGA-IB-7651-01 6 27222471 27222471 G T PRSS16 Splice_Site p.X384_splice 0.16 TCGA-IB-7651-01 6 27222472 27222472 A G PRSS16 Missense_Mutation p.Y384C 0.16 deleterious(0.05) possibly_damaging(0.62) TCGA-IB-7651-01 6 27222622 27222622 C T PRSS16 Missense_Mutation p.P434L 0.18 deleterious(0.04) benign(0.008) TCGA-IB-7651-01 6 27419126 27419126 G A ZNF184 Missense_Mutation p.R738C 0.17 tolerated(0.06) possibly_damaging(0.884) TCGA-IB-7651-01 6 27419782 27419782 T C ZNF184 Missense_Mutation p.Q519R 0.16 tolerated(0.73) probably_damaging(0.967) TCGA-IB-7651-01 6 27420156 27420156 T G ZNF184 Missense_Mutation p.E394D 0.21 tolerated(0.12) benign(0.137) TCGA-IB-7651-01 6 27420622 27420622 C T ZNF184 Missense_Mutation p.R239H 0.19 deleterious(0.02) probably_damaging(0.964) TCGA-IB-7651-01 6 27425127 27425127 T C ZNF184 Missense_Mutation p.D46G 0.20 tolerated(0.13) probably_damaging(0.999) TCGA-IB-7651-01 6 2770555 2770555 C A WRNIP1 Missense_Mutation p.P406T 0.08 tolerated(0.2) benign(0.008) TCGA-IB-7651-01 6 27835000 27835000 C T HIST1H1B Missense_Mutation p.G103D 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-IB-7651-01 6 2784570 2784570 C T WRNIP1 Missense_Mutation p.P552L 0.23 deleterious(0) benign(0.436) TCGA-IB-7651-01 6 27858327 27858327 C T HIST1H3J Missense_Mutation p.D82N 0.10 deleterious_low_confidence(0.01) benign(0.051) TCGA-IB-7651-01 6 27858533 27858533 C T HIST1H3J Missense_Mutation p.G13D 0.10 deleterious_low_confidence(0) benign(0.02) TCGA-IB-7651-01 6 27879173 27879173 G T OR2B2 Missense_Mutation p.L309I 0.17 tolerated(0.2) benign(0.003) TCGA-IB-7651-01 6 27879845 27879845 T C OR2B2 Missense_Mutation p.I85V 0.19 deleterious(0) benign(0.094) TCGA-IB-7651-01 6 27925530 27925530 C T OR2B6 Missense_Mutation p.P171L 0.14 tolerated(0.19) benign(0.102) TCGA-IB-7651-01 6 28053579 28053579 C A ZNF165 Silent p.A107A 0.19 TCGA-IB-7651-01 6 28093345 28093345 C T ZSCAN16 Nonsense_Mutation p.Q42* 0.15 TCGA-IB-7651-01 6 28117327 28117327 G T ZKSCAN8 Nonsense_Mutation p.E162* 0.17 TCGA-IB-7651-01 6 28120057 28120057 G T ZKSCAN8 Missense_Mutation p.D224Y 0.10 tolerated(0.09) probably_damaging(1) TCGA-IB-7651-01 6 28195016 28195016 C T ZSCAN9 Nonsense_Mutation p.R52* 0.16 TCGA-IB-7651-01 6 28195209 28195209 G A ZSCAN9 Missense_Mutation p.C116Y 0.15 tolerated(0.63) benign(0.062) TCGA-IB-7651-01 6 28213078 28213078 A G ZKSCAN4 Missense_Mutation p.V485A 0.10 tolerated(0.29) benign(0.005) TCGA-IB-7651-01 6 28213259 28213259 T C ZKSCAN4 Missense_Mutation p.I425V 0.21 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 6 28213501 28213501 C T ZKSCAN4 Missense_Mutation p.G344D 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 28219397 28219397 C A ZKSCAN4 Missense_Mutation p.G121V 0.20 deleterious(0) probably_damaging(0.958) TCGA-IB-7651-01 6 28227547 28227547 C T NKAPL Missense_Mutation p.A133V 0.13 tolerated(0.14) unknown(0) TCGA-IB-7651-01 6 28227565 28227565 C T NKAPL Missense_Mutation p.P139L 0.15 tolerated(1) unknown(0) TCGA-IB-7651-01 6 28228254 28228254 C A NKAPL Missense_Mutation p.L369I 0.18 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 6 28269043 28269043 G A PGBD1 Missense_Mutation p.R471K 0.16 tolerated(0.31) benign(0.011) TCGA-IB-7651-01 6 28269797 28269797 G A PGBD1 Silent p.Q722Q 0.16 TCGA-IB-7651-01 6 28297300 28297300 C T ZSCAN31 Missense_Mutation p.R54Q 0.18 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 6 28334218 28334218 C T ZKSCAN3 3'UTR 0.11 TCGA-IB-7651-01 6 28358503 28358503 C T ZSCAN12 Missense_Mutation p.E522K 0.11 deleterious(0.01) benign(0.023) TCGA-IB-7651-01 6 28365827 28365827 G A ZSCAN12 Missense_Mutation p.T119I 0.14 deleterious(0.04) benign(0.017) TCGA-IB-7651-01 6 28366005 28366005 G A ZSCAN12 Missense_Mutation p.P60S 0.18 deleterious(0) possibly_damaging(0.856) TCGA-IB-7651-01 6 28366051 28366051 G T ZSCAN12 Silent p.V44V 0.19 TCGA-IB-7651-01 6 28403940 28403940 C T ZSCAN23 Missense_Mutation p.G35D 0.22 tolerated(0.21) benign(0.016) TCGA-IB-7651-01 6 28497272 28497272 G T GPX5 Missense_Mutation p.E44D 0.14 tolerated(0.34) benign(0.001) TCGA-IB-7651-01 6 28501868 28501868 G A GPX5 Missense_Mutation p.R197H 0.16 deleterious(0.02) possibly_damaging(0.608) TCGA-IB-7651-01 6 28540422 28540422 G T SCAND3 Missense_Mutation p.L1082M 0.05 deleterious(0.03) possibly_damaging(0.785) TCGA-IB-7651-01 6 28541211 28541211 C T SCAND3 Missense_Mutation p.A819T 0.18 deleterious(0.01) probably_damaging(0.984) TCGA-IB-7651-01 6 28542469 28542469 C T SCAND3 Missense_Mutation p.M671I 0.16 deleterious_low_confidence(0.01) benign(0.017) TCGA-IB-7651-01 6 28542676 28542676 G T SCAND3 Silent p.S602S 0.21 TCGA-IB-7651-01 6 28871720 28871720 C A TRIM27 3'UTR 0.24 TCGA-IB-7651-01 6 2896327 2896327 G A SERPINB9 Missense_Mutation p.A89V 0.18 deleterious(0.02) possibly_damaging(0.799) TCGA-IB-7651-01 6 28967386 28967386 G A ZNF311 Missense_Mutation p.S63L 0.22 tolerated(0.49) benign(0.05) TCGA-IB-7651-01 6 29079778 29079778 C A OR2J3 Missense_Mutation p.F37L 0.21 tolerated(0.17) benign(0.113) TCGA-IB-7651-01 6 29275057 29275057 G A OR14J1 Silent p.L197L 0.17 TCGA-IB-7651-01 6 29324043 29324043 C T OR5V1 5'UTR 0.18 TCGA-IB-7651-01 6 29408013 29408013 C T OR10C1 Missense_Mutation p.S74F 0.18 deleterious(0.01) probably_damaging(0.972) TCGA-IB-7651-01 6 29408232 29408232 C T OR10C1 Missense_Mutation p.A147V 0.22 deleterious(0.04) possibly_damaging(0.669) TCGA-IB-7651-01 6 29408493 29408493 G A OR10C1 Missense_Mutation p.R234H 0.04 tolerated(0.88) benign(0.005) TCGA-IB-7651-01 6 29408552 29408552 G A OR10C1 Missense_Mutation p.A254T 0.04 deleterious(0.03) possibly_damaging(0.86) TCGA-IB-7651-01 6 29408712 29408712 C T OR10C1 Missense_Mutation p.T307M 0.20 tolerated(0.13) benign(0) TCGA-IB-7651-01 6 29454915 29454915 C A MAS1L Missense_Mutation p.Q255H 0.21 tolerated(0.31) probably_damaging(0.955) TCGA-IB-7651-01 6 29556001 29556001 G A OR2H2 Missense_Mutation p.D94N 0.20 deleterious(0) benign(0) TCGA-IB-7651-01 6 29556596 29556596 A G OR2H2 Missense_Mutation p.N292S 0.18 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 6 29633971 29633971 C T MOG Missense_Mutation p.A160V 0.18 tolerated(0.13) possibly_damaging(0.715) TCGA-IB-7651-01 6 29635428 29635428 C T MOG Nonsense_Mutation p.R187* 0.08 TCGA-IB-7651-01 6 29640963 29640963 C T ZFP57 Missense_Mutation p.A309T 0.20 tolerated(0.58) benign(0.002) TCGA-IB-7651-01 6 29641220 29641220 C T ZFP57 Missense_Mutation p.R223H 0.19 tolerated(0.14) benign(0.157) TCGA-IB-7651-01 6 29644907 29644907 C A ZFP57 5'UTR 0.20 TCGA-IB-7651-01 6 29695860 29695860 C A HLA-F 3'Flank 0.18 TCGA-IB-7651-01 6 29713322 29713322 C A Y_RNA 5'Flank 0.18 TCGA-IB-7651-01 6 29796436 29796436 C A HLA-G Missense_Mutation p.L154M 0.05 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-IB-7651-01 6 29911111 29911111 A G HLA-A Missense_Mutation p.Y137C 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-IB-7651-01 6 29911116 29911116 C A HLA-A Missense_Mutation p.Q139K 0.17 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-IB-7651-01 6 29976198 29976198 T C ZNRD1-AS1 Intron 0.22 TCGA-IB-7651-01 6 30038975 30038975 C T RNF39 Silent p.A392A 0.23 TCGA-IB-7651-01 6 30039014 30039014 G A RNF39 Silent p.Y379Y 0.11 TCGA-IB-7651-01 6 30041026 30041026 C A RNF39 Splice_Site p.X197_splice 0.19 TCGA-IB-7651-01 6 3010414 3010414 G T NQO2 Missense_Mutation p.D55Y 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 30114887 30114887 G A TRIM40 Silent p.A160A 0.21 TCGA-IB-7651-01 6 30166750 30166750 C T TRIM26 Missense_Mutation p.R44H 0.15 tolerated(0.21) benign(0.041) TCGA-IB-7651-01 6 3017130 3017130 C T NQO2 Missense_Mutation p.L144F 0.13 deleterious(0.01) probably_damaging(0.946) TCGA-IB-7651-01 6 30297258 30297258 G A TRIM39 Missense_Mutation p.R55H 0.19 tolerated(0.12) possibly_damaging(0.58) TCGA-IB-7651-01 6 30514929 30514929 G T GNL1 Silent p.P467P 0.17 TCGA-IB-7651-01 6 30520942 30520942 G A GNL1 Missense_Mutation p.R275W 0.04 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 6 30530251 30530251 C T PRR3 Silent p.G182G 0.19 TCGA-IB-7651-01 6 30546253 30546253 A T ABCF1 Missense_Mutation p.N130Y 0.21 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-IB-7651-01 6 30553100 30553100 C T ABCF1 Silent p.N485N 0.21 TCGA-IB-7651-01 6 30614342 30614342 C A ATAT1 Silent p.S384S 0.13 TCGA-IB-7651-01 6 30628018 30628018 C T DHX16 Missense_Mutation p.V516M 0.16 deleterious(0) unknown(0) TCGA-IB-7651-01 6 30630467 30630467 C T DHX16 Missense_Mutation p.R494H 0.21 deleterious(0) unknown(0) TCGA-IB-7651-01 6 30638717 30638717 C A DHX16 Missense_Mutation p.Q153H 0.19 tolerated(0.18) unknown(0) TCGA-IB-7651-01 6 30647026 30647026 C A PPP1R18 Missense_Mutation p.E584D 0.10 tolerated_low_confidence(0.44) benign(0.003) TCGA-IB-7651-01 6 30668209 30668209 C A MDC1 3'UTR 0.16 TCGA-IB-7651-01 6 30708465 30708465 G A FLOT1 Silent p.H155H 0.16 TCGA-IB-7651-01 6 30709395 30709395 G A FLOT1 Missense_Mutation p.A69V 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 30860156 30860156 C A DDR1 Silent p.A312A 0.19 TCGA-IB-7651-01 6 30860251 30860251 G A DDR1 Missense_Mutation p.R344H 0.18 tolerated(0.1) possibly_damaging(0.707) TCGA-IB-7651-01 6 30865220 30865220 C A DDR1 Missense_Mutation p.L694M 0.20 deleterious(0) probably_damaging(0.974) TCGA-IB-7651-01 6 30867647 30867647 A G DDR1 3'UTR 0.12 TCGA-IB-7651-01 6 30878524 30878524 G A GTF2H4 Missense_Mutation p.E153K 0.17 tolerated(0.45) benign(0.153) TCGA-IB-7651-01 6 30890674 30890674 G T VARS2 Splice_Site p.X733_splice 0.19 TCGA-IB-7651-01 6 30919785 30919785 A C DPCR1 Silent p.R1182R 0.25 TCGA-IB-7651-01 6 30954944 30954944 C T MUC21 Missense_Mutation p.T331I 0.17 tolerated(0.35) unknown(0) TCGA-IB-7651-01 6 31079554 31079554 G A C6orf15 Silent p.R194R 0.21 TCGA-IB-7651-01 6 31080049 31080049 G A C6orf15 Silent p.I29I 0.17 TCGA-IB-7651-01 6 31083901 31083901 G A CDSN Silent p.R497R 0.19 TCGA-IB-7651-01 6 31084043 31084043 C T CDSN Missense_Mutation p.S450N 0.24 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-IB-7651-01 6 31084129 31084129 G A CDSN Silent p.S421S 0.20 TCGA-IB-7651-01 6 31118509 31118509 G T CCHCR1 Missense_Mutation p.T365N 0.21 deleterious(0.02) benign(0.035) TCGA-IB-7651-01 6 31130430 31130430 G T TCF19 Missense_Mutation p.S325I 0.19 deleterious(0) probably_damaging(0.928) TCGA-IB-7651-01 6 3119630 3119630 G T BPHL Intron 0.14 TCGA-IB-7651-01 6 3129401 3129401 C T BPHL Silent p.Y167Y 0.16 TCGA-IB-7651-01 6 31498650 31498650 G A DDX39B Silent p.S392S 0.18 TCGA-IB-7651-01 6 31548600 31548600 G A LTB Silent p.F207F 0.23 TCGA-IB-7651-01 6 31555449 31555449 C T LST1 Silent p.G17G 0.18 TCGA-IB-7651-01 6 3156345 3156345 T C TUBB2A Silent p.T33T 0.13 TCGA-IB-7651-01 6 31584727 31584727 A C AIF1 3'UTR 0.20 TCGA-IB-7651-01 6 31590622 31590622 C T PRRC2A Missense_Mutation p.S19L 0.08 unknown(0) TCGA-IB-7651-01 6 31595695 31595695 C T PRRC2A Missense_Mutation p.R482C 0.20 unknown(0) TCGA-IB-7651-01 6 31599424 31599424 G A PRRC2A Missense_Mutation p.G992R 0.21 unknown(0) TCGA-IB-7651-01 6 31601175 31601175 C - PRRC2A Frame_Shift_Del p.P1448Rfs*43 0.13 TCGA-IB-7651-01 6 31609612 31609612 G A BAG6 Nonsense_Mutation p.R786* 0.17 TCGA-IB-7651-01 6 31626860 31626860 C T C6orf47 Missense_Mutation p.D289N 0.04 tolerated_low_confidence(0.09) benign(0.372) TCGA-IB-7651-01 6 31630466 31630466 C T GPANK1 Silent p.Q216Q 0.18 TCGA-IB-7651-01 6 31658380 31658380 C A ABHD16A Splice_Site p.X282_splice 0.17 TCGA-IB-7651-01 6 31659391 31659391 G A ABHD16A Missense_Mutation p.R270W 0.19 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 6 31671061 31671061 C T ABHD16A 5'UTR 0.12 TCGA-IB-7651-01 6 31675894 31675894 T A LY6G6F Missense_Mutation p.V210D 0.07 deleterious(0) benign(0.144) TCGA-IB-7651-01 6 31694958 31694958 C T DDAH2 3'UTR 0.12 TCGA-IB-7651-01 6 31734467 31734467 A C VWA7 Missense_Mutation p.F653V 0.16 deleterious(0.01) possibly_damaging(0.625) TCGA-IB-7651-01 6 31734988 31734988 G A VWA7 Missense_Mutation p.P610L 0.21 deleterious(0) possibly_damaging(0.628) TCGA-IB-7651-01 6 31735240 31735240 C T VWA7 Missense_Mutation p.R563H 0.22 tolerated(0.34) benign(0.01) TCGA-IB-7651-01 6 31749480 31749480 G T VARS Silent p.G802G 0.16 TCGA-IB-7651-01 6 31749699 31749699 G A VARS Missense_Mutation p.R758C 0.18 deleterious(0) possibly_damaging(0.836) TCGA-IB-7651-01 6 31785396 31785396 C T HSPA1A Silent p.G621G 0.18 TCGA-IB-7651-01 6 31832662 31832662 G A SLC44A4 Silent p.S619S 0.19 TCGA-IB-7651-01 6 31852732 31852732 C T EHMT2 Missense_Mutation p.R802H 0.11 tolerated(0.08) probably_damaging(0.98) TCGA-IB-7651-01 6 31860299 31860299 G A EHMT2 Missense_Mutation p.T250I 0.16 tolerated_low_confidence(0.07) benign(0.001) TCGA-IB-7651-01 6 31895368 31895368 C T C2 5'UTR 0.17 TCGA-IB-7651-01 6 31895512 31895512 G A CFB 5'UTR 0.17 TCGA-IB-7651-01 6 31895572 31895572 C A CFB Missense_Mutation p.P15T 0.16 tolerated(0.43) benign(0.005) TCGA-IB-7651-01 6 31905129 31905129 C T CFB Missense_Mutation p.A188V 0.15 tolerated(0.24) benign(0.002) TCGA-IB-7651-01 6 31914967 31914967 G A CFB Missense_Mutation p.G663E 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 31920095 31920095 G A NELFE Missense_Mutation p.L376F 0.19 deleterious_low_confidence(0.02) unknown(0) TCGA-IB-7651-01 6 31922863 31922863 C T NELFE Missense_Mutation p.R126H 0.15 deleterious(0) benign(0.255) TCGA-IB-7651-01 6 31930244 31930244 C A SKIV2L Missense_Mutation p.L365M 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 31930327 31930327 G T SKIV2L Missense_Mutation p.E392D 0.19 tolerated(0.18) benign(0.02) TCGA-IB-7651-01 6 31933776 31933776 C T SKIV2L Missense_Mutation p.H730Y 0.21 tolerated(0.09) probably_damaging(0.925) TCGA-IB-7651-01 6 31936211 31936211 C G SKIV2L Missense_Mutation p.Q989E 0.16 tolerated(0.54) benign(0.342) TCGA-IB-7651-01 6 32008965 32008965 T C CYP21A2 3'UTR 0.12 TCGA-IB-7651-01 6 32013839 32013839 C T TNXB 5'UTR 0.26 TCGA-IB-7651-01 6 32016159 32016159 G A TNXB 5'Flank 0.20 TCGA-IB-7651-01 6 32016203 32016203 A G TNXB 5'Flank 0.14 TCGA-IB-7651-01 6 32029210 32029210 G A TNXB Missense_Mutation p.R2486W 0.04 possibly_damaging(0.555) TCGA-IB-7651-01 6 32036330 32036330 G A TNXB Silent p.V2019V 0.17 TCGA-IB-7651-01 6 32052335 32052335 G A TNXB Silent p.D1100D 0.10 TCGA-IB-7651-01 6 32063627 32063627 A G TNXB Missense_Mutation p.L668P 0.15 possibly_damaging(0.648) TCGA-IB-7651-01 6 32064837 32064837 C T TNXB Missense_Mutation p.V265M 0.17 benign(0.157) TCGA-IB-7651-01 6 32095235 32095235 G A ATF6B Silent p.L78L 0.07 TCGA-IB-7651-01 6 32095969 32095969 G T ATF6B Missense_Mutation p.L6M 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 6 32130344 32130344 G A PPT2 Splice_Site p.X243_splice 0.04 TCGA-IB-7651-01 6 32130591 32130591 T C PPT2 Missense_Mutation p.L264P 0.11 tolerated(0.25) possibly_damaging(0.683) TCGA-IB-7651-01 6 32149346 32149346 C T AGER Intron 0.07 TCGA-IB-7651-01 6 32151969 32151969 C T AGER Missense_Mutation p.V11M 0.13 tolerated(0.11) benign(0.056) TCGA-IB-7651-01 6 32163591 32163591 C T NOTCH4 Missense_Mutation p.A1879T 0.20 tolerated_low_confidence(0.15) benign(0.038) TCGA-IB-7651-01 6 32164146 32164146 G A NOTCH4 Silent p.R1751R 0.17 TCGA-IB-7651-01 6 32165082 32165082 G T NOTCH4 Silent p.V1682V 0.19 TCGA-IB-7651-01 6 32166826 32166826 A C NOTCH4 Missense_Mutation p.I1471S 0.05 tolerated(0.18) possibly_damaging(0.556) TCGA-IB-7651-01 6 32171927 32171927 C T NOTCH4 Silent p.L1035L 0.15 TCGA-IB-7651-01 6 32190387 32190387 G A NOTCH4 Missense_Mutation p.L118F 0.18 deleterious(0.01) possibly_damaging(0.526) TCGA-IB-7651-01 6 32190464 32190464 C A NOTCH4 Missense_Mutation p.S92I 0.18 deleterious(0) benign(0.333) TCGA-IB-7651-01 6 3225232 3225232 G A TUBB2B Missense_Mutation p.S364L 0.11 deleterious_low_confidence(0) possibly_damaging(0.553) TCGA-IB-7651-01 6 3225674 3225674 G A TUBB2B Silent p.L217L 0.15 TCGA-IB-7651-01 6 3227752 3227752 G A TUBB2B Missense_Mutation p.A9V 0.18 tolerated_low_confidence(0.29) benign(0.018) TCGA-IB-7651-01 6 32369565 32369565 G A BTNL2 Silent p.L243L 0.19 TCGA-IB-7651-01 6 32370729 32370729 G A BTNL2 Missense_Mutation p.S231L 0.21 deleterious(0.03) benign(0.045) TCGA-IB-7651-01 6 32713601 32713601 C A HLA-DQA2 Missense_Mutation p.P122H 0.17 deleterious(0.02) benign(0.409) TCGA-IB-7651-01 6 32800500 32800500 C T TAP2 Silent p.E349E 0.20 TCGA-IB-7651-01 6 32818155 32818155 A C TAP1 Missense_Mutation p.I457R 0.19 deleterious(0.01) possibly_damaging(0.449) TCGA-IB-7651-01 6 3290032 3290032 G T SLC22A23 Missense_Mutation p.L427M 0.17 deleterious(0.05) probably_damaging(0.981) TCGA-IB-7651-01 6 32947695 32947695 C T BRD2 Silent p.Y679Y 0.17 TCGA-IB-7651-01 6 33037542 33037542 C A HLA-DPA1 Missense_Mutation p.W74C 0.22 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 6 33144231 33144231 G T COL11A2 Nonsense_Mutation p.Y630* 0.19 TCGA-IB-7651-01 6 33145207 33145207 C A COL11A2 Missense_Mutation p.Q565H 0.22 benign(0.387) TCGA-IB-7651-01 6 33169572 33169572 C T SLC39A7 Silent p.F154F 0.17 TCGA-IB-7651-01 6 33170375 33170375 G T SLC39A7 Nonsense_Mutation p.E280* 0.21 TCGA-IB-7651-01 6 33179292 33179292 G A RING1 Silent p.L271L 0.20 TCGA-IB-7651-01 6 33179615 33179615 C T RING1 Missense_Mutation p.P319S 0.16 tolerated(0.47) unknown(0) TCGA-IB-7651-01 6 33218738 33218738 G T VPS52 Silent p.L684L 0.04 TCGA-IB-7651-01 6 33244259 33244259 C A RPS18 3'UTR 0.19 TCGA-IB-7651-01 6 33245202 33245202 G A B3GALT4 Silent p.Q2Q 0.18 TCGA-IB-7651-01 6 33245950 33245950 C T B3GALT4 Missense_Mutation p.P252S 0.22 deleterious(0.01) probably_damaging(0.993) TCGA-IB-7651-01 6 33284326 33284326 T C ZBTB22 Missense_Mutation p.D123G 0.18 deleterious(0) possibly_damaging(0.894) TCGA-IB-7651-01 6 33284660 33284660 C A ZBTB22 Missense_Mutation p.A12S 0.06 tolerated_low_confidence(0.23) unknown(0) TCGA-IB-7651-01 6 33287473 33287473 T C DAXX Missense_Mutation p.S542G 0.17 tolerated(0.14) benign(0.013) TCGA-IB-7651-01 6 33288663 33288663 C A DAXX Missense_Mutation p.A297S 0.21 tolerated(0.55) benign(0.349) TCGA-IB-7651-01 6 33288802 33288802 G A DAXX Silent p.G250G 0.17 TCGA-IB-7651-01 6 33382062 33382062 C T PHF1 Silent p.C265C 0.17 TCGA-IB-7651-01 6 33382914 33382914 C T PHF1 Missense_Mutation p.A411V 0.16 tolerated(0.18) benign(0.262) TCGA-IB-7651-01 6 33385815 33385815 C T CUTA Intron 0.18 TCGA-IB-7651-01 6 33391298 33391298 C T SYNGAP1 Missense_Mutation p.P38S 0.17 tolerated(0.08) benign(0.066) TCGA-IB-7651-01 6 33399973 33399973 C A SYNGAP1 Missense_Mutation p.P111T 0.13 tolerated(0.06) benign(0.05) TCGA-IB-7651-01 6 33541918 33541918 C T BAK1 Missense_Mutation p.V142I 0.19 tolerated(0.15) benign(0.039) TCGA-IB-7651-01 6 33543127 33543127 G A BAK1 Silent p.L100L 0.18 TCGA-IB-7651-01 6 33555525 33555525 C T GGNBP1 Intron 0.06 TCGA-IB-7651-01 6 33630418 33630418 G A ITPR3 Silent p.S275S 0.15 TCGA-IB-7651-01 6 33633694 33633694 G T ITPR3 Missense_Mutation p.V498F 0.17 tolerated(0.17) possibly_damaging(0.493) TCGA-IB-7651-01 6 33634963 33634963 C T ITPR3 Missense_Mutation p.R537W 0.16 deleterious(0) probably_damaging(0.968) TCGA-IB-7651-01 6 33652166 33652166 C T ITPR3 Missense_Mutation p.S1657L 0.18 tolerated(0.06) benign(0.102) TCGA-IB-7651-01 6 33656032 33656032 G A ITPR3 Missense_Mutation p.R2131H 0.16 deleterious(0.03) possibly_damaging(0.715) TCGA-IB-7651-01 6 33663516 33663516 C T ITPR3 Missense_Mutation p.R2659C 0.18 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 6 33663607 33663607 G A ITPR3 3'UTR 0.17 TCGA-IB-7651-01 6 33744789 33744789 G A LEMD2 Missense_Mutation p.R435C 0.21 deleterious(0.01) probably_damaging(0.916) TCGA-IB-7651-01 6 33744826 33744826 G T LEMD2 Silent p.V422V 0.08 TCGA-IB-7651-01 6 33746091 33746091 G A LEMD2 Missense_Mutation p.R362C 0.21 deleterious(0) probably_damaging(0.981) TCGA-IB-7651-01 6 33752178 33752178 G A LEMD2 Silent p.A268A 0.18 TCGA-IB-7651-01 6 33996020 33996020 G A GRM4 Missense_Mutation p.R856C 0.20 deleterious(0) possibly_damaging(0.667) TCGA-IB-7651-01 6 34004315 34004315 G A GRM4 Silent p.C524C 0.20 TCGA-IB-7651-01 6 34360181 34360181 C T NUDT3 5'UTR 0.17 TCGA-IB-7651-01 6 34497247 34497247 G T PACSIN1 Missense_Mutation p.S177I 0.08 deleterious(0.05) benign(0.016) TCGA-IB-7651-01 6 34499506 34499506 C T PACSIN1 Silent p.R389R 0.18 TCGA-IB-7651-01 6 34574651 34574651 A G C6orf106 Missense_Mutation p.V181A 0.14 tolerated(0.42) benign(0.017) TCGA-IB-7651-01 6 345913 345913 G A DUSP22 Missense_Mutation p.S83N 0.12 tolerated(0.8) benign(0.097) TCGA-IB-7651-01 6 34789517 34789517 G T UHRF1BP1 Missense_Mutation p.E44D 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 6 34803134 34803134 C T UHRF1BP1 Silent p.L245L 0.18 TCGA-IB-7651-01 6 34935091 34935091 C T ANKS1A Silent p.G91G 0.14 TCGA-IB-7651-01 6 34937945 34937945 T C ANKS1A Splice_Site p.X145_splice 0.20 TCGA-IB-7651-01 6 34953057 34953057 T G ANKS1A Splice_Site p.X403_splice 0.08 TCGA-IB-7651-01 6 34985670 34985670 C A ANKS1A Missense_Mutation p.A615D 0.19 tolerated(0.11) benign(0.147) TCGA-IB-7651-01 6 35210976 35210976 C A SCUBE3 Silent p.S624S 0.20 TCGA-IB-7651-01 6 35254112 35254112 T C ZNF76 Silent p.F56F 0.14 TCGA-IB-7651-01 6 35255528 35255528 T C ZNF76 Missense_Mutation p.V113A 0.19 tolerated(0.07) benign(0.105) TCGA-IB-7651-01 6 35285747 35285747 A T DEF6 Missense_Mutation p.D296V 0.16 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 6 35289273 35289273 G A DEF6 3'UTR 0.20 TCGA-IB-7651-01 6 35393666 35393666 G A PPARD Missense_Mutation p.R379H 0.21 tolerated(0.52) possibly_damaging(0.512) TCGA-IB-7651-01 6 35393974 35393974 G A PPARD 3'UTR 0.18 TCGA-IB-7651-01 6 35443205 35443205 A G TEAD3 Missense_Mutation p.C368R 0.08 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 35466170 35466170 C T TULP1 Silent p.P521P 0.19 TCGA-IB-7651-01 6 35587999 35587999 C T FKBP5 Silent p.E101E 0.22 TCGA-IB-7651-01 6 35704922 35704922 G A ARMC12 Missense_Mutation p.D13N 0.19 tolerated_low_confidence(0.25) benign(0.012) TCGA-IB-7651-01 6 35705130 35705130 G A ARMC12 Splice_Site p.X82_splice 0.10 TCGA-IB-7651-01 6 35773690 35773690 C T LHFPL5 Silent p.G81G 0.19 TCGA-IB-7651-01 6 35782423 35782423 C T LHFPL5 Silent p.G171G 0.16 TCGA-IB-7651-01 6 35842022 35842022 T G SRPK1 Missense_Mutation p.K191N 0.19 tolerated(0.06) benign(0.071) TCGA-IB-7651-01 6 35967781 35967781 G A SLC26A8 Nonsense_Mutation p.Q145* 0.10 TCGA-IB-7651-01 6 36172526 36172526 C T BRPF3 Missense_Mutation p.R514W 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 36185695 36185695 C T BRPF3 Silent p.G997G 0.18 TCGA-IB-7651-01 6 36298366 36298366 G A C6orf222 Silent p.C34C 0.18 TCGA-IB-7651-01 6 36336729 36336729 C T ETV7 Missense_Mutation p.A262T 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 36714294 36714294 G A CPNE5 Missense_Mutation p.A360V 0.15 tolerated(0.15) possibly_damaging(0.821) TCGA-IB-7651-01 6 36742762 36742762 G T CPNE5 Missense_Mutation p.A238D 0.21 deleterious(0.02) probably_damaging(0.958) TCGA-IB-7651-01 6 36824411 36824411 G A PPIL1 Silent p.I77I 0.14 TCGA-IB-7651-01 6 36982780 36982780 G A FGD2 Missense_Mutation p.R332H 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 37336474 37336474 C T RNF8 Missense_Mutation p.T152I 0.20 deleterious(0) possibly_damaging(0.807) TCGA-IB-7651-01 6 37348968 37348968 A G RNF8 Missense_Mutation p.I427V 0.18 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 6 37441300 37441300 C A CMTR1 Missense_Mutation p.L582M 0.17 deleterious(0.03) possibly_damaging(0.753) TCGA-IB-7651-01 6 37452903 37452903 T C CCDC167 Missense_Mutation p.H37R 0.12 tolerated(1) benign(0.001) TCGA-IB-7651-01 6 37619936 37619936 C T MDGA1 Missense_Mutation p.R388H 0.15 tolerated(0.37) probably_damaging(0.973) TCGA-IB-7651-01 6 38312855 38312855 A C BTBD9 Missense_Mutation p.V390G 0.18 deleterious(0) possibly_damaging(0.637) TCGA-IB-7651-01 6 3850321 3850321 G T FAM50B Missense_Mutation p.Q92H 0.17 deleterious(0.04) benign(0.013) TCGA-IB-7651-01 6 38645126 38645126 G A GLO1 Missense_Mutation p.P167L 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 6 38691111 38691111 A G DNAH8 Splice_Site 0.18 TCGA-IB-7651-01 6 38743659 38743659 C A DNAH8 Missense_Mutation p.L415M 0.15 probably_damaging(0.998) TCGA-IB-7651-01 6 38783391 38783391 G A DNAH8 Missense_Mutation p.V944M 0.22 benign(0.024) TCGA-IB-7651-01 6 38790628 38790628 G A DNAH8 Missense_Mutation p.A963T 0.08 benign(0) TCGA-IB-7651-01 6 38834380 38834380 C T DNAH8 Missense_Mutation p.A1954V 0.20 probably_damaging(0.994) TCGA-IB-7651-01 6 38840488 38840488 C T DNAH8 Silent p.D2172D 0.17 TCGA-IB-7651-01 6 38890961 38890961 G T DNAH8 Missense_Mutation p.R3380I 0.16 possibly_damaging(0.873) TCGA-IB-7651-01 6 39034062 39034062 G A GLP1R Silent p.A164A 0.15 TCGA-IB-7651-01 6 39073241 39073241 G A SAYSD1 Silent p.R173R 0.17 TCGA-IB-7651-01 6 39196930 39196930 C A KCNK5 5'UTR 0.11 TCGA-IB-7651-01 6 39196973 39196973 C T KCNK5 5'UTR 0.18 TCGA-IB-7651-01 6 39328261 39328261 G A KIF6 Silent p.I664I 0.23 TCGA-IB-7651-01 6 39353422 39353422 G A KIF6 Missense_Mutation p.R613W 0.16 deleterious(0.01) possibly_damaging(0.841) TCGA-IB-7651-01 6 39851741 39851741 C T DAAM2 Missense_Mutation p.R617C 0.16 deleterious(0) probably_damaging(0.971) TCGA-IB-7651-01 6 39855321 39855321 G A DAAM2 Silent p.S671S 0.20 TCGA-IB-7651-01 6 39864744 39864744 C A DAAM2 Missense_Mutation p.S833Y 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 39869088 39869088 C T DAAM2 Missense_Mutation p.A941V 0.08 tolerated(0.35) benign(0.352) TCGA-IB-7651-01 6 39874116 39874116 G T MOCS1 3'UTR 0.16 TCGA-IB-7651-01 6 39877623 39877623 C A MOCS1 Missense_Mutation p.R353I 0.20 deleterious(0.03) benign(0.091) TCGA-IB-7651-01 6 40400136 40400136 A T LRFN2 Missense_Mutation p.F239L 0.19 tolerated(0.07) benign(0.029) TCGA-IB-7651-01 6 4060752 4060752 C T PRPF4B Silent p.L976L 0.09 TCGA-IB-7651-01 6 40996163 40996163 C A UNC5CL Missense_Mutation p.E502D 0.22 tolerated_low_confidence(0.54) benign(0.001) TCGA-IB-7651-01 6 40998490 40998490 A G UNC5CL Missense_Mutation p.L375S 0.17 tolerated(0.19) possibly_damaging(0.826) TCGA-IB-7651-01 6 41002657 41002657 C T UNC5CL Missense_Mutation p.V53M 0.18 deleterious_low_confidence(0.04) benign(0.347) TCGA-IB-7651-01 6 41036622 41036622 G A OARD1 Missense_Mutation p.S105F 0.15 deleterious(0.03) benign(0.165) TCGA-IB-7651-01 6 41166116 41166116 G T TREML2 Missense_Mutation p.T36N 0.18 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 6 41196470 41196470 C T TREML4 Missense_Mutation p.L28F 0.18 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 6 4130619 4130619 G A ECI2 Missense_Mutation p.A163V 0.17 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 6 4130951 4130951 A C C6orf201 3'UTR 0.17 TCGA-IB-7651-01 6 41712141 41712141 C T PGC Missense_Mutation p.A108T 0.15 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 6 41738730 41738730 G A FRS3 Missense_Mutation p.P369L 0.16 tolerated(0.1) probably_damaging(0.96) TCGA-IB-7651-01 6 41753969 41753969 C T PRICKLE4 Missense_Mutation p.A229V 0.17 tolerated(0.34) possibly_damaging(0.642) TCGA-IB-7651-01 6 41774184 41774184 G A USP49 Missense_Mutation p.R180C 0.18 deleterious(0.03) possibly_damaging(0.857) TCGA-IB-7651-01 6 41774276 41774276 C T USP49 Missense_Mutation p.R149H 0.15 tolerated(0.52) benign(0.002) TCGA-IB-7651-01 6 41874828 41874828 C T MED20 Silent p.P207P 0.16 TCGA-IB-7651-01 6 41888662 41888662 G A MED20 Intron 0.20 TCGA-IB-7651-01 6 41895197 41895197 C T BYSL Silent p.G118G 0.16 TCGA-IB-7651-01 6 41908275 41908275 T G CCND3 Missense_Mutation p.N83H 0.17 deleterious(0.05) probably_damaging(0.998) TCGA-IB-7651-01 6 42146144 42146144 G A GUCA1A Missense_Mutation p.D110N 0.18 tolerated(0.36) benign(0.242) TCGA-IB-7651-01 6 42196122 42196122 A C TRERF1 Missense_Mutation p.D1188E 0.18 tolerated_low_confidence(0.28) benign(0.417) TCGA-IB-7651-01 6 42231107 42231107 G A TRERF1 Missense_Mutation p.A612V 0.17 tolerated(0.54) possibly_damaging(0.483) TCGA-IB-7651-01 6 42613320 42613320 C T UBR2 Missense_Mutation p.P801S 0.14 deleterious(0.05) possibly_damaging(0.78) TCGA-IB-7651-01 6 42652582 42652582 G A UBR2 Missense_Mutation p.S1609N 0.15 tolerated(0.46) benign(0.004) TCGA-IB-7651-01 6 42656018 42656018 C A UBR2 Missense_Mutation p.L1640M 0.05 deleterious(0) probably_damaging(0.946) TCGA-IB-7651-01 6 42658801 42658801 C T UBR2 Nonsense_Mutation p.R1720* 0.15 TCGA-IB-7651-01 6 42666183 42666183 C T PRPH2 Silent p.E297E 0.20 TCGA-IB-7651-01 6 42713042 42713042 G A TBCC Missense_Mutation p.A257V 0.09 deleterious(0.01) probably_damaging(0.969) TCGA-IB-7651-01 6 42796339 42796339 G A GLTSCR1L Missense_Mutation p.E90K 0.20 tolerated(0.23) possibly_damaging(0.481) TCGA-IB-7651-01 6 42890844 42890844 C T PTCRA Silent p.V46V 0.19 TCGA-IB-7651-01 6 42931939 42931939 G A PEX6 3'UTR 0.23 TCGA-IB-7651-01 6 42933437 42933437 G T PEX6 Missense_Mutation p.S818Y 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 42974254 42974254 G A PPP2R5D Silent p.P53P 0.05 TCGA-IB-7651-01 6 42986629 42986629 G A KLHDC3 Silent p.P283P 0.17 TCGA-IB-7651-01 6 43005624 43005624 C T CUL7 Silent p.T1717T 0.17 TCGA-IB-7651-01 6 43006104 43006104 C A CUL7 Missense_Mutation p.Q1642H 0.18 tolerated(0.1) benign(0.001) TCGA-IB-7651-01 6 43006154 43006154 G A CUL7 Missense_Mutation p.R1626W 0.19 tolerated(1) benign(0.001) TCGA-IB-7651-01 6 43015930 43015930 C T CUL7 Missense_Mutation p.D793N 0.19 deleterious(0.03) benign(0.02) TCGA-IB-7651-01 6 43016152 43016152 G A CUL7 Missense_Mutation p.R745W 0.18 deleterious(0) possibly_damaging(0.888) TCGA-IB-7651-01 6 43017878 43017878 C T CUL7 Nonsense_Mutation p.W548* 0.04 TCGA-IB-7651-01 6 43020447 43020447 C T CUL7 Missense_Mutation p.R79H 0.19 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 6 43097480 43097480 C A PTK7 Missense_Mutation p.P136H 0.13 tolerated(0.13) possibly_damaging(0.903) TCGA-IB-7651-01 6 43113120 43113120 C T PTK7 Silent p.L872L 0.20 TCGA-IB-7651-01 6 43152468 43152468 C T CUL9 Silent p.A140A 0.17 TCGA-IB-7651-01 6 43182887 43182887 C T CUL9 Missense_Mutation p.A1920V 0.19 tolerated(0.28) benign(0.108) TCGA-IB-7651-01 6 43250511 43250511 C T TTBK1 Missense_Mutation p.A678V 0.16 benign(0.026) TCGA-IB-7651-01 6 43266443 43266443 G A SLC22A7 Missense_Mutation p.G116D 0.18 deleterious(0) possibly_damaging(0.864) TCGA-IB-7651-01 6 43305331 43305331 C T ZNF318 Missense_Mutation p.M2135I 0.15 benign(0.109) TCGA-IB-7651-01 6 43305593 43305593 G A ZNF318 Missense_Mutation p.S2048F 0.18 benign(0.022) TCGA-IB-7651-01 6 43305786 43305786 C T ZNF318 Missense_Mutation p.D1984N 0.16 benign(0.014) TCGA-IB-7651-01 6 43305787 43305787 T C ZNF318 Silent p.Q1983Q 0.24 TCGA-IB-7651-01 6 43307732 43307732 G T ZNF318 Missense_Mutation p.P1335H 0.20 probably_damaging(0.997) TCGA-IB-7651-01 6 43308239 43308239 T G ZNF318 Missense_Mutation p.K1166T 0.11 probably_damaging(0.972) TCGA-IB-7651-01 6 43324962 43324962 C A ZNF318 Nonsense_Mutation p.G364* 0.18 TCGA-IB-7651-01 6 43400424 43400424 G T ABCC10 Missense_Mutation p.G236W 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 43417778 43417778 G A ABCC10 Silent p.Q1476Q 0.07 TCGA-IB-7651-01 6 43420813 43420813 C A DLK2 Missense_Mutation p.Q67H 0.23 deleterious(0.04) possibly_damaging(0.659) TCGA-IB-7651-01 6 43480031 43480031 G T YIPF3 Silent p.G309G 0.18 TCGA-IB-7651-01 6 43565513 43565513 A G POLH Missense_Mutation p.T191A 0.16 tolerated(0.31) benign(0.009) TCGA-IB-7651-01 6 43638647 43638647 C T RSPH9 Missense_Mutation p.H282Y 0.20 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-IB-7651-01 6 44116249 44116249 G T TMEM63B Splice_Site p.X374_splice 0.16 TCGA-IB-7651-01 6 44148732 44148732 G A CAPN11 Missense_Mutation p.D623N 0.18 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 6 44270564 44270564 G A AARS2 Missense_Mutation p.A780V 0.17 deleterious(0.02) benign(0.124) TCGA-IB-7651-01 6 44272508 44272508 G A AARS2 Silent p.D542D 0.17 TCGA-IB-7651-01 6 44274124 44274124 G T AARS2 Missense_Mutation p.A398D 0.18 tolerated(0.26) benign(0.295) TCGA-IB-7651-01 6 44279892 44279892 G T AARS2 Missense_Mutation p.L118M 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 44371706 44371706 G A CDC5L Missense_Mutation p.A234T 0.19 tolerated(0.32) benign(0.002) TCGA-IB-7651-01 6 44797465 44797465 G A SUPT3H 3'UTR 0.17 TCGA-IB-7651-01 6 45459688 45459688 G A RUNX2 Silent p.Q232Q 0.08 TCGA-IB-7651-01 6 45514903 45514903 C T RUNX2 Missense_Mutation p.T476I 0.15 deleterious(0.02) probably_damaging(0.993) TCGA-IB-7651-01 6 45870802 45870802 G A CLIC5 3'UTR 0.18 TCGA-IB-7651-01 6 45870911 45870911 G A CLIC5 Missense_Mutation p.R383C 0.17 deleterious(0.03) possibly_damaging(0.892) TCGA-IB-7651-01 6 46107841 46107841 C T ENPP4 Missense_Mutation p.S174L 0.15 deleterious(0.02) benign(0.157) TCGA-IB-7651-01 6 46129280 46129280 A G ENPP5 Missense_Mutation p.V406A 0.18 tolerated(0.86) benign(0) TCGA-IB-7651-01 6 46563770 46563770 G T CYP39A1 Missense_Mutation p.A340D 0.19 deleterious(0) possibly_damaging(0.906) TCGA-IB-7651-01 6 46610004 46610004 C T CYP39A1 Missense_Mutation p.G70E 0.14 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 46657569 46657569 C T TDRD6 Silent p.F568F 0.20 TCGA-IB-7651-01 6 46661801 46661801 T A TDRD6 Missense_Mutation p.F1979Y 0.21 tolerated(0.18) benign(0.013) TCGA-IB-7651-01 6 46677077 46677077 C T PLA2G7 Missense_Mutation p.D286N 0.23 deleterious(0.03) benign(0.441) TCGA-IB-7651-01 6 46787418 46787418 T G MEP1A Missense_Mutation p.I178S 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 46794235 46794235 G A MEP1A Missense_Mutation p.C308Y 0.19 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 6 46806754 46806754 C T MEP1A Missense_Mutation p.R708C 0.17 deleterious(0) possibly_damaging(0.883) TCGA-IB-7651-01 6 46827246 46827246 C T GPR116 Silent p.T798T 0.17 TCGA-IB-7651-01 6 46834846 46834846 C T GPR116 Silent p.K550K 0.16 TCGA-IB-7651-01 6 46851895 46851895 C A GPR116 Missense_Mutation p.G148W 0.05 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 6 46856207 46856207 C T GPR116 Missense_Mutation p.V65I 0.19 tolerated(0.33) benign(0.012) TCGA-IB-7651-01 6 46967937 46967937 C T GPR110 3'UTR 0.19 TCGA-IB-7651-01 6 46989795 46989795 C A GPR110 Splice_Site p.X151_splice 0.15 TCGA-IB-7651-01 6 47846053 47846053 C T PTCHD4 Missense_Mutation p.V843I 0.17 tolerated(0.9) possibly_damaging(0.854) TCGA-IB-7651-01 6 4892303 4892303 C A CDYL Silent p.L127L 0.22 TCGA-IB-7651-01 6 49426795 49426795 C A MUT Missense_Mutation p.A129S 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.762) TCGA-IB-7651-01 6 49427082 49427082 A G MUT Missense_Mutation p.L33P 0.16 deleterious_low_confidence(0.01) benign(0.062) TCGA-IB-7651-01 6 49802881 49802881 G T CRISP1 3'UTR 0.22 TCGA-IB-7651-01 6 49819742 49819742 A C CRISP1 Missense_Mutation p.V56G 0.19 tolerated(0.36) benign(0.124) TCGA-IB-7651-01 6 5000852 5000852 T C RPP40 Silent p.A94A 0.20 TCGA-IB-7651-01 6 50681746 50681746 G A TFAP2D 5'UTR 0.22 TCGA-IB-7651-01 6 50681795 50681795 C T TFAP2D Silent p.V9V 0.18 TCGA-IB-7651-01 6 50683111 50683111 G A TFAP2D Missense_Mutation p.G108R 0.04 tolerated(0.09) benign(0.211) TCGA-IB-7651-01 6 50786656 50786656 G A TFAP2B Missense_Mutation p.E18K 0.16 deleterious(0.01) benign(0.026) TCGA-IB-7651-01 6 5109689 5109689 T C LYRM4 Nonstop_Mutation p.*41Wext*42 0.15 TCGA-IB-7651-01 6 51491841 51491841 G A PKHD1 Silent p.R3913R 0.17 TCGA-IB-7651-01 6 51618011 51618011 C A PKHD1 Nonsense_Mutation p.E2980* 0.17 TCGA-IB-7651-01 6 51771115 51771115 C T PKHD1 Missense_Mutation p.V2236M 0.17 deleterious(0.01) benign(0.213) TCGA-IB-7651-01 6 51900516 51900516 C A PKHD1 Missense_Mutation p.G1034V 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 52101651 52101651 T A IL17F 3'UTR 0.19 TCGA-IB-7651-01 6 52129267 52129267 C T MCM3 3'UTR 0.17 TCGA-IB-7651-01 6 52132686 52132686 C A MCM3 Missense_Mutation p.E728D 0.09 tolerated(0.52) benign(0.001) TCGA-IB-7651-01 6 52141118 52141118 C T MCM3 Missense_Mutation p.R486Q 0.06 tolerated(0.08) benign(0.037) TCGA-IB-7651-01 6 52147572 52147572 C A MCM3 Missense_Mutation p.K138N 0.16 tolerated(0.07) benign(0.127) TCGA-IB-7651-01 6 52148176 52148176 A G MCM3 Missense_Mutation p.V81A 0.16 deleterious(0) benign(0.354) TCGA-IB-7651-01 6 52268034 52268034 G A PAQR8 Missense_Mutation p.R8H 0.19 tolerated(0.05) benign(0.001) TCGA-IB-7651-01 6 52268422 52268422 G A PAQR8 Silent p.E137E 0.21 TCGA-IB-7651-01 6 52268953 52268953 C T PAQR8 Silent p.R314R 0.14 TCGA-IB-7651-01 6 52288769 52288769 C T EFHC1 Missense_Mutation p.T30M 0.21 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 6 52354937 52354937 G T EFHC1 Splice_Site p.X547_splice 0.15 TCGA-IB-7651-01 6 52617718 52617718 T C GSTA2 Silent p.E116E 0.04 TCGA-IB-7651-01 6 52622689 52622689 G A GSTA2 Silent p.I19I 0.17 TCGA-IB-7651-01 6 52696614 52696614 C A GSTA5 3'UTR 0.14 TCGA-IB-7651-01 6 52699025 52699025 G T GSTA5 Missense_Mutation p.L110I 0.18 tolerated(0.16) benign(0) TCGA-IB-7651-01 6 52770568 52770568 A C GSTA3 Missense_Mutation p.L22R 0.20 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 6 52843205 52843205 G T GSTA4 3'UTR 0.16 TCGA-IB-7651-01 6 52847504 52847504 C T GSTA4 Splice_Site p.X139_splice 0.08 TCGA-IB-7651-01 6 52895864 52895864 G A ICK Silent p.H119H 0.20 TCGA-IB-7651-01 6 52995599 52995599 A G GCM1 Splice_Site p.X190_splice 0.18 TCGA-IB-7651-01 6 52995674 52995674 C A GCM1 Missense_Mutation p.R166I 0.18 deleterious(0) probably_damaging(0.956) TCGA-IB-7651-01 6 53010408 53010408 G T GCM1 Missense_Mutation p.S8Y 0.19 deleterious(0) possibly_damaging(0.819) TCGA-IB-7651-01 6 532557 532557 G A EXOC2 Silent p.I764I 0.17 TCGA-IB-7651-01 6 53519407 53519407 C A KLHL31 Missense_Mutation p.D222Y 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 6 53519553 53519553 A G KLHL31 Missense_Mutation p.M173T 0.20 tolerated(0.11) benign(0.044) TCGA-IB-7651-01 6 53989480 53989480 C T MLIP Silent p.S143S 0.15 TCGA-IB-7651-01 6 54066908 54066908 G T MLIP Missense_Mutation p.K330N 0.14 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 6 54095632 54095632 G A MLIP Missense_Mutation p.G412R 0.19 deleterious(0.02) probably_damaging(1) TCGA-IB-7651-01 6 54173411 54173411 G A TINAG Silent p.K21K 0.14 TCGA-IB-7651-01 6 54173618 54173618 A C TINAG Missense_Mutation p.E90D 0.19 tolerated(1) benign(0.036) TCGA-IB-7651-01 6 54219400 54219400 C T TINAG Nonsense_Mutation p.R406* 0.20 TCGA-IB-7651-01 6 54734985 54734985 A C FAM83B Intron 0.16 TCGA-IB-7651-01 6 54735119 54735119 G T FAM83B Missense_Mutation p.K25N 0.22 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 6 55039249 55039249 T C HCRTR2 5'UTR 0.19 TCGA-IB-7651-01 6 55128552 55128552 T C HCRTR2 Missense_Mutation p.Y232H 0.21 deleterious(0.02) possibly_damaging(0.792) TCGA-IB-7651-01 6 55192283 55192283 C A GFRAL 5'UTR 0.11 TCGA-IB-7651-01 6 55216312 55216312 C T GFRAL Missense_Mutation p.A211V 0.18 deleterious(0) possibly_damaging(0.521) TCGA-IB-7651-01 6 55304313 55304313 G A HMGCLL1 Silent p.G310G 0.17 TCGA-IB-7651-01 6 55739599 55739599 A G BMP5 Missense_Mutation p.V22A 0.17 tolerated(0.37) benign(0.004) TCGA-IB-7651-01 6 55922469 55922469 C A COL21A1 Nonsense_Mutation p.G954* 0.19 TCGA-IB-7651-01 6 56035650 56035650 C T COL21A1 Missense_Mutation p.E275K 0.26 deleterious(0) probably_damaging(0.926) TCGA-IB-7651-01 6 562781 562781 T C EXOC2 Intron 0.16 TCGA-IB-7651-01 6 56336854 56336854 A T DST Intron 0.18 TCGA-IB-7651-01 6 56342199 56342199 C T DST Missense_Mutation p.D4584N 0.18 probably_damaging(0.999) TCGA-IB-7651-01 6 56394248 56394248 G A DST Missense_Mutation p.R3242W 0.17 benign(0.021) TCGA-IB-7651-01 6 56417657 56417657 G A DST Silent p.Y2688Y 0.19 TCGA-IB-7651-01 6 56468647 56468647 G T DST Intron 0.14 TCGA-IB-7651-01 6 56472399 56472399 G A DST Intron 0.16 TCGA-IB-7651-01 6 56473301 56473301 C T DST Intron 0.16 TCGA-IB-7651-01 6 56483562 56483562 T G DST Intron 0.04 TCGA-IB-7651-01 6 56484401 56484401 A G DST Intron 0.16 TCGA-IB-7651-01 6 56492082 56492082 G A DST Silent p.L1011L 0.17 TCGA-IB-7651-01 6 56494123 56494123 T G DST Missense_Mutation p.D930A 0.16 probably_damaging(0.999) TCGA-IB-7651-01 6 56498955 56498955 C T DST Missense_Mutation p.R662K 0.17 benign(0.053) TCGA-IB-7651-01 6 56500405 56500405 G A DST Silent p.D519D 0.17 TCGA-IB-7651-01 6 56504351 56504351 G A DST Missense_Mutation p.A382V 0.18 probably_damaging(0.967) TCGA-IB-7651-01 6 56505335 56505335 C T DST Missense_Mutation p.R162H 0.18 benign(0.043) TCGA-IB-7651-01 6 56516029 56516029 C A DST Missense_Mutation p.D199Y 0.18 probably_damaging(0.999) TCGA-IB-7651-01 6 56535563 56535563 C T DST Missense_Mutation p.A153T 0.15 probably_damaging(0.983) TCGA-IB-7651-01 6 56716322 56716322 A C RP11-472M19.2 Intron 0.16 TCGA-IB-7651-01 6 56857269 56857269 G A BEND6 Missense_Mutation p.A72T 0.17 tolerated_low_confidence(0.38) benign(0) TCGA-IB-7651-01 6 57012217 57012218 - A ZNF451 Frame_Shift_Ins p.K448Efs*7 0.18 TCGA-IB-7651-01 6 57012453 57012453 G T ZNF451 Missense_Mutation p.A524S 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-IB-7651-01 6 57512614 57512614 A G PRIM2 3'UTR 0.04 TCGA-IB-7651-01 6 57512822 57512822 C T PRIM2 3'UTR 0.18 TCGA-IB-7651-01 6 5999197 5999197 C T NRN1 3'UTR 0.20 TCGA-IB-7651-01 6 6002641 6002641 T C NRN1 Missense_Mutation p.M49V 0.19 tolerated(0.11) benign(0.001) TCGA-IB-7651-01 6 6007040 6007040 C T NRN1 5'UTR 0.19 TCGA-IB-7651-01 6 62995884 62995884 G A KHDRBS2 5'UTR 0.20 TCGA-IB-7651-01 6 6305593 6305593 A G F13A1 Missense_Mutation p.Y104H 0.17 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 6 63990245 63990245 C T LGSN Missense_Mutation p.R404Q 0.14 tolerated(0.5) benign(0.015) TCGA-IB-7651-01 6 63990442 63990442 C T LGSN Silent p.T338T 0.20 TCGA-IB-7651-01 6 64004878 64004878 C A LGSN Missense_Mutation p.V35F 0.15 tolerated_low_confidence(0.13) possibly_damaging(0.694) TCGA-IB-7651-01 6 64004931 64004931 C T LGSN Missense_Mutation p.G17D 0.15 tolerated_low_confidence(0.27) benign(0.003) TCGA-IB-7651-01 6 64289169 64289169 G T PTP4A1 Missense_Mutation p.V113L 0.18 deleterious(0.01) benign(0.118) TCGA-IB-7651-01 6 64394104 64394104 G T PHF3 Missense_Mutation p.A161S 0.18 tolerated(0.89) benign(0.012) TCGA-IB-7651-01 6 64410340 64410340 G A PHF3 Missense_Mutation p.R1028Q 0.10 tolerated(1) benign(0.006) TCGA-IB-7651-01 6 64422753 64422753 G T PHF3 Nonsense_Mutation p.G1757* 0.16 TCGA-IB-7651-01 6 656051 656051 T G HUS1B 3'UTR 0.20 TCGA-IB-7651-01 6 656306 656306 C T HUS1B Silent p.S213S 0.19 TCGA-IB-7651-01 6 656841 656841 C T HUS1B Missense_Mutation p.R35H 0.21 deleterious(0.01) benign(0.21) TCGA-IB-7651-01 6 66053985 66053985 G A EYS Silent p.N515N 0.17 TCGA-IB-7651-01 6 66063417 66063417 A C EYS Missense_Mutation p.F465V 0.16 tolerated(0.48) benign(0.001) TCGA-IB-7651-01 6 66063454 66063454 G T EYS Nonsense_Mutation p.Y452* 0.16 TCGA-IB-7651-01 6 66205048 66205048 C T EYS Missense_Mutation p.D86N 0.15 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-IB-7651-01 6 69348554 69348554 C T BAI3 Intron 0.16 TCGA-IB-7651-01 6 69949063 69949063 C T BAI3 Missense_Mutation p.S920F 0.16 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 6 70070821 70070821 T G BAI3 Missense_Mutation p.I1219S 0.14 tolerated(0.5) possibly_damaging(0.881) TCGA-IB-7651-01 6 70608839 70608839 G A COL19A1 Splice_Site p.X31_splice 0.17 TCGA-IB-7651-01 6 70852662 70852662 C T COL19A1 Nonsense_Mutation p.Q526* 0.16 TCGA-IB-7651-01 6 70866246 70866246 A G COL19A1 Silent p.G741G 0.17 TCGA-IB-7651-01 6 70964196 70964196 C T COL9A1 Missense_Mutation p.G568R 0.20 probably_damaging(1) TCGA-IB-7651-01 6 70972947 70972947 T C COL9A1 Silent p.P465P 0.19 TCGA-IB-7651-01 6 71138024 71138024 G A FAM135A 5'UTR 0.20 TCGA-IB-7651-01 6 71235308 71235308 A C FAM135A Missense_Mutation p.N841H 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 6 71236360 71236360 G A FAM135A Silent p.S1191S 0.16 TCGA-IB-7651-01 6 71243497 71243497 G A FAM135A Missense_Mutation p.R1302H 0.14 deleterious(0.03) probably_damaging(1) TCGA-IB-7651-01 6 71245970 71245970 G A FAM135A Missense_Mutation p.G1325R 0.15 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 6 71570062 71570062 G T SMAP1 3'UTR 0.20 TCGA-IB-7651-01 6 72011229 72011229 G T OGFRL1 Missense_Mutation p.S278I 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 6 72011859 72011859 T G OGFRL1 3'UTR 0.16 TCGA-IB-7651-01 6 7211110 7211110 C T RREB1 Nonsense_Mutation p.R167* 0.17 TCGA-IB-7651-01 6 7229595 7229595 C T RREB1 Silent p.G421G 0.20 TCGA-IB-7651-01 6 7229879 7229879 G T RREB1 Missense_Mutation p.R516L 0.05 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 6 7230407 7230407 C T RREB1 Missense_Mutation p.T692M 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 7232026 7232026 C T RREB1 Silent p.L1232L 0.20 TCGA-IB-7651-01 6 7247318 7247318 C T RREB1 Silent p.D1545D 0.21 TCGA-IB-7651-01 6 72960117 72960117 C T RIMS1 Missense_Mutation p.R776C 0.13 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 6 73108697 73108697 T C RIMS1 Silent p.C1587C 0.20 TCGA-IB-7651-01 6 73787531 73787531 C T KCNQ5 Missense_Mutation p.S280L 0.12 deleterious(0) possibly_damaging(0.59) TCGA-IB-7651-01 6 73879480 73879480 C T KCNQ5 Missense_Mutation p.L513F 0.16 tolerated(0.23) benign(0.105) TCGA-IB-7651-01 6 73900337 73900337 C T KCNQ5 Missense_Mutation p.T559I 0.15 deleterious(0.01) probably_damaging(0.922) TCGA-IB-7651-01 6 73904434 73904434 C T KCNQ5 Missense_Mutation p.A718V 0.16 tolerated(0.24) benign(0.05) TCGA-IB-7651-01 6 73905229 73905229 G A KCNQ5 3'UTR 0.28 TCGA-IB-7651-01 6 73951827 73951827 C T KHDC1 Silent p.L155L 0.19 TCGA-IB-7651-01 6 7404697 7404697 C T RIOK1 Missense_Mutation p.R301W 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 6 74104604 74104604 G A DDX43 5'UTR 0.20 TCGA-IB-7651-01 6 74189713 74189713 G T MTO1 Missense_Mutation p.Q331H 0.19 deleterious(0.01) probably_damaging(0.993) TCGA-IB-7651-01 6 74201963 74201963 C T MTO1 Silent p.L588L 0.16 TCGA-IB-7651-01 6 74228449 74228449 C T EEF1A1 Silent p.L248L 0.19 TCGA-IB-7651-01 6 74325115 74325115 G T SLC17A5 Missense_Mutation p.S345Y 0.16 deleterious(0.03) possibly_damaging(0.691) TCGA-IB-7651-01 6 74407148 74407148 G T CD109 Missense_Mutation p.G34W 0.16 tolerated(0.15) benign(0.014) TCGA-IB-7651-01 6 74497138 74497138 C T CD109 Missense_Mutation p.T840I 0.15 tolerated(0.35) benign(0.002) TCGA-IB-7651-01 6 7563014 7563014 G A DSP Splice_Site p.X242_splice 0.19 TCGA-IB-7651-01 6 7565651 7565651 G A DSP Silent p.T279T 0.09 TCGA-IB-7651-01 6 7578046 7578046 G T DSP Missense_Mutation p.G971V 0.08 probably_damaging(1) TCGA-IB-7651-01 6 75796193 75796193 C T COL12A1 3'UTR 0.18 TCGA-IB-7651-01 6 7579637 7579637 T C DSP Missense_Mutation p.F1072L 0.05 benign(0.001) TCGA-IB-7651-01 6 7580632 7580632 G A DSP Silent p.R1403R 0.20 TCGA-IB-7651-01 6 7582959 7582959 C T DSP Silent p.L1822L 0.17 TCGA-IB-7651-01 6 7583025 7583025 G A DSP Missense_Mutation p.E1844K 0.17 benign(0.242) TCGA-IB-7651-01 6 75840677 75840677 C T COL12A1 Silent p.T1986T 0.17 TCGA-IB-7651-01 6 75844520 75844520 C A COL12A1 Missense_Mutation p.D1816Y 0.20 probably_damaging(1) TCGA-IB-7651-01 6 75844551 75844551 C A COL12A1 Missense_Mutation p.Q1805H 0.20 possibly_damaging(0.9) TCGA-IB-7651-01 6 7584800 7584800 G T DSP Missense_Mutation p.K2435N 0.19 possibly_damaging(0.731) TCGA-IB-7651-01 6 7585624 7585624 C T DSP Missense_Mutation p.A2710V 0.15 benign(0.007) TCGA-IB-7651-01 6 75898987 75898987 C A COL12A1 Missense_Mutation p.V257L 0.19 probably_damaging(0.996) TCGA-IB-7651-01 6 76022516 76022516 G A FILIP1 Missense_Mutation p.T1011M 0.10 deleterious(0.02) probably_damaging(0.977) TCGA-IB-7651-01 6 76022961 76022961 G A FILIP1 Missense_Mutation p.L863F 0.17 tolerated(0.4) benign(0.041) TCGA-IB-7651-01 6 76023041 76023041 C T FILIP1 Missense_Mutation p.S836N 0.18 tolerated(0.37) benign(0.065) TCGA-IB-7651-01 6 76023250 76023250 C T FILIP1 Silent p.G766G 0.14 TCGA-IB-7651-01 6 76024448 76024448 G A FILIP1 Missense_Mutation p.A367V 0.17 deleterious(0.01) benign(0.071) TCGA-IB-7651-01 6 7606277 7606277 C T SNRNP48 Nonsense_Mutation p.R274* 0.15 TCGA-IB-7651-01 6 76072528 76072528 G A FILIP1 Missense_Mutation p.H128Y 0.15 deleterious(0.03) possibly_damaging(0.844) TCGA-IB-7651-01 6 76412670 76412670 T G SENP6 Missense_Mutation p.H866Q 0.19 tolerated(0.44) benign(0.004) TCGA-IB-7651-01 6 76423282 76423282 T C SENP6 Missense_Mutation p.V988A 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 6 76623953 76623953 C T MYO6 Nonsense_Mutation p.Q1205* 0.16 TCGA-IB-7651-01 6 76660430 76660430 T C IMPG1 Missense_Mutation p.Y558C 0.17 deleterious(0) probably_damaging(0.935) TCGA-IB-7651-01 6 76744474 76744474 C T IMPG1 Missense_Mutation p.R111Q 0.17 deleterious(0.05) probably_damaging(0.957) TCGA-IB-7651-01 6 79595126 79595126 G A IRAK1BP1 Missense_Mutation p.R116K 0.15 tolerated(0.38) benign(0.007) TCGA-IB-7651-01 6 79650542 79650542 A G PHIP Silent p.Y1778Y 0.18 TCGA-IB-7651-01 6 79655978 79655978 C A PHIP Splice_Site p.X1457_splice 0.14 TCGA-IB-7651-01 6 79671415 79671415 C T PHIP Silent p.R1216R 0.18 TCGA-IB-7651-01 6 79692681 79692681 C T PHIP Silent p.K897K 0.14 TCGA-IB-7651-01 6 79724895 79724895 C T PHIP Silent p.P476P 0.14 TCGA-IB-7651-01 6 80197365 80197365 G A LCA5 Silent p.L484L 0.04 TCGA-IB-7651-01 6 80198831 80198831 C T LCA5 Missense_Mutation p.V401I 0.13 tolerated(0.75) benign(0.004) TCGA-IB-7651-01 6 80723075 80723075 A C TTK Missense_Mutation p.N326H 0.21 tolerated(0.24) benign(0.001) TCGA-IB-7651-01 6 80912929 80912929 G T BCKDHB Missense_Mutation p.K317N 0.16 tolerated(0.23) benign(0.02) TCGA-IB-7651-01 6 83754249 83754249 G T UBE3D Missense_Mutation p.D165E 0.18 deleterious(0.05) probably_damaging(0.966) TCGA-IB-7651-01 6 83810551 83810551 T G DOPEY1 Missense_Mutation p.I89S 0.18 deleterious(0) probably_damaging(0.962) TCGA-IB-7651-01 6 83848714 83848714 C T DOPEY1 Silent p.H1651H 0.23 TCGA-IB-7651-01 6 83866927 83866927 C T DOPEY1 Missense_Mutation p.P2211S 0.17 tolerated(0.55) benign(0.184) TCGA-IB-7651-01 6 83877656 83877656 G A DOPEY1 Missense_Mutation p.V2390M 0.20 tolerated(0.07) benign(0.021) TCGA-IB-7651-01 6 83885690 83885690 C T PGM3 Silent p.G401G 0.18 TCGA-IB-7651-01 6 83900687 83900687 C A PGM3 Missense_Mutation p.K43N 0.16 deleterious(0.03) probably_damaging(0.993) TCGA-IB-7651-01 6 83937191 83937191 C T ME1 Missense_Mutation p.A380T 0.13 deleterious(0.01) possibly_damaging(0.599) TCGA-IB-7651-01 6 84234319 84234319 G A PRSS35 Missense_Mutation p.V387I 0.19 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 6 84311055 84311055 G A SNAP91 Missense_Mutation p.A420V 0.20 tolerated(0.25) unknown(0) TCGA-IB-7651-01 6 84417642 84417642 G A SNAP91 Missense_Mutation p.S2L 0.24 deleterious(0) unknown(0) TCGA-IB-7651-01 6 84566960 84566960 G A RIPPLY2 Splice_Site p.X80_splice 0.16 TCGA-IB-7651-01 6 84567110 84567110 C A RIPPLY2 3'UTR 0.19 TCGA-IB-7651-01 6 84798871 84798871 C A MRAP2 Missense_Mutation p.P97T 0.22 deleterious(0.03) probably_damaging(0.913) TCGA-IB-7651-01 6 84834750 84834750 A G KIAA1009 3'UTR 0.29 TCGA-IB-7651-01 6 84870536 84870536 G A KIAA1009 Nonsense_Mutation p.R926* 0.09 TCGA-IB-7651-01 6 84879094 84879094 T C KIAA1009 Missense_Mutation p.R780G 0.26 deleterious(0.03) possibly_damaging(0.56) TCGA-IB-7651-01 6 85473690 85473690 G A TBX18 Silent p.D70D 0.29 TCGA-IB-7651-01 6 86197066 86197066 A T NT5E Missense_Mutation p.K321N 0.18 tolerated(0.12) possibly_damaging(0.449) TCGA-IB-7651-01 6 86215648 86215648 A C SNX14 3'UTR 0.18 TCGA-IB-7651-01 6 86223854 86223854 G T SNX14 Missense_Mutation p.L831I 0.06 deleterious(0.03) benign(0.11) TCGA-IB-7651-01 6 86256893 86256893 G A SNX14 Missense_Mutation p.R349C 0.13 deleterious(0.01) probably_damaging(0.967) TCGA-IB-7651-01 6 86259508 86259508 G A SNX14 Missense_Mutation p.H242Y 0.16 tolerated(0.41) benign(0.063) TCGA-IB-7651-01 6 86324728 86324728 C A SYNCRIP Nonsense_Mutation p.G540* 0.17 TCGA-IB-7651-01 6 86346734 86346734 G A SYNCRIP Missense_Mutation p.A206V 0.05 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 6 87796039 87796039 T C CGA Missense_Mutation p.K68E 0.16 tolerated(0.09) benign(0.14) TCGA-IB-7651-01 6 87968327 87968327 G A ZNF292 Silent p.K1660K 0.18 TCGA-IB-7651-01 6 87968743 87968743 A G ZNF292 Missense_Mutation p.N1799S 0.08 tolerated_low_confidence(0.2) benign(0.035) TCGA-IB-7651-01 6 88119631 88119631 G A C6ORF165 Missense_Mutation p.G25E 0.21 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 6 88229394 88229394 C A RARS2 Nonsense_Mutation p.G382* 0.17 TCGA-IB-7651-01 6 88240541 88240541 A C RARS2 Missense_Mutation p.F244L 0.16 deleterious(0.01) probably_damaging(0.934) TCGA-IB-7651-01 6 88240658 88240658 A C RARS2 Silent p.V205V 0.19 TCGA-IB-7651-01 6 88272489 88272489 T C RARS2 Silent p.T76T 0.18 TCGA-IB-7651-01 6 88763711 88763711 G A SPACA1 Missense_Mutation p.V86I 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.808) TCGA-IB-7651-01 6 88768475 88768475 G A SPACA1 Missense_Mutation p.A137T 0.17 tolerated(0.19) benign(0.407) TCGA-IB-7651-01 6 89790706 89790706 C T PNRC1 Silent p.A31A 0.18 TCGA-IB-7651-01 6 89868116 89868116 G A PM20D2 Missense_Mutation p.E329K 0.17 tolerated(0.53) benign(0.06) TCGA-IB-7651-01 6 90053428 90053428 C A UBE2J1 Missense_Mutation p.D27Y 0.21 tolerated(0.12) benign(0.271) TCGA-IB-7651-01 6 90097100 90097100 C A RRAGD Nonsense_Mutation p.G120* 0.18 TCGA-IB-7651-01 6 90390433 90390433 G T MDN1 Missense_Mutation p.S4047Y 0.12 benign(0.001) TCGA-IB-7651-01 6 90402593 90402593 G A MDN1 Silent p.L3386L 0.08 TCGA-IB-7651-01 6 90406082 90406082 A G MDN1 Missense_Mutation p.F3127S 0.22 probably_damaging(0.917) TCGA-IB-7651-01 6 90406269 90406269 T C MDN1 Missense_Mutation p.I3065V 0.14 benign(0.001) TCGA-IB-7651-01 6 90411377 90411377 G T MDN1 Missense_Mutation p.T2776N 0.17 benign(0.28) TCGA-IB-7651-01 6 90417165 90417165 C T MDN1 Silent p.R2643R 0.10 TCGA-IB-7651-01 6 90455062 90455062 G A MDN1 Missense_Mutation p.R1370W 0.19 probably_damaging(0.988) TCGA-IB-7651-01 6 90463282 90463282 C A MDN1 Missense_Mutation p.K1008N 0.17 benign(0.049) TCGA-IB-7651-01 6 90504402 90504402 C A MDN1 Nonsense_Mutation p.E150* 0.21 TCGA-IB-7651-01 6 90513085 90513085 C T MDN1 Silent p.S97S 0.16 TCGA-IB-7651-01 6 90573238 90573238 G A CASP8AP2 RNA 0.20 TCGA-IB-7651-01 6 90576760 90576760 G T CASP8AP2 RNA 0.18 TCGA-IB-7651-01 6 90578207 90578207 C T CASP8AP2 RNA 0.05 TCGA-IB-7651-01 6 90578293 90578293 T C CASP8AP2 RNA 0.21 TCGA-IB-7651-01 6 90647962 90647962 A G BACH2 Silent p.H648H 0.20 TCGA-IB-7651-01 6 93967929 93967929 G A EPHA7 Silent p.T666T 0.20 TCGA-IB-7651-01 6 94124474 94124474 C T EPHA7 Missense_Mutation p.D37N 0.11 tolerated(0.13) benign(0.152) TCGA-IB-7651-01 6 97001406 97001406 G A UFL1 3'UTR 0.16 TCGA-IB-7651-01 6 97338938 97338938 G T NDUFAF4 3'UTR 0.14 TCGA-IB-7651-01 6 97562152 97562152 G A KLHL32 Missense_Mutation p.R374H 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 6 97578726 97578726 G A KLHL32 Missense_Mutation p.D503N 0.09 tolerated(0.33) possibly_damaging(0.513) TCGA-IB-7651-01 6 97634384 97634384 T G MMS22L Missense_Mutation p.D741A 0.06 deleterious(0.02) probably_damaging(0.997) TCGA-IB-7651-01 6 99283976 99283976 G T POU3F2 Missense_Mutation p.E409D 0.15 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 6 99347219 99347219 T C FBXL4 Silent p.L414L 0.17 TCGA-IB-7651-01 6 99781260 99781260 G A FAXC Missense_Mutation p.A189V 0.19 deleterious(0.03) possibly_damaging(0.636) TCGA-IB-7651-01 6 99781355 99781355 A G FAXC Silent p.V157V 0.25 TCGA-IB-7651-01 6 99852519 99852519 A C PNISR Missense_Mutation p.I354M 0.17 tolerated(0.16) benign(0.35) TCGA-IB-7651-01 6 99853919 99853919 T G PNISR Missense_Mutation p.K330N 0.14 deleterious(0.02) probably_damaging(0.959) TCGA-IB-7651-01 6 99853950 99853950 T C PNISR Missense_Mutation p.H320R 0.14 tolerated(0.15) benign(0.021) TCGA-IB-7651-01 6 99883713 99883713 G A USP45 Missense_Mutation p.A775V 0.20 deleterious(0.01) benign(0.067) TCGA-IB-7651-01 6 99893884 99893884 A G USP45 Silent p.C588C 0.22 TCGA-IB-7651-01 7 100006173 100006173 G A ZCWPW1 Silent p.Y326Y 0.18 TCGA-IB-7651-01 7 100006218 100006218 G T ZCWPW1 Silent p.A311A 0.22 TCGA-IB-7651-01 7 100014052 100014052 A C ZCWPW1 Missense_Mutation p.I169M 0.20 deleterious(0.03) benign(0.09) TCGA-IB-7651-01 7 100017440 100017440 C T ZCWPW1 Missense_Mutation p.C32Y 0.06 tolerated(1) benign(0) TCGA-IB-7651-01 7 100029193 100029193 C T MEPCE Nonsense_Mutation p.R518* 0.17 TCGA-IB-7651-01 7 100060989 100060989 C T C7orf61 Nonsense_Mutation p.W128* 0.21 TCGA-IB-7651-01 7 100091449 100091449 C A NYAP1 Silent p.R817R 0.12 TCGA-IB-7651-01 7 100161557 100161557 G A AGFG2 Silent p.P424P 0.20 TCGA-IB-7651-01 7 100174761 100174761 G A LRCH4 Missense_Mutation p.L438F 0.19 tolerated(0.09) benign(0.052) TCGA-IB-7651-01 7 100187909 100187909 G A FBXO24 Missense_Mutation p.R122H 0.18 tolerated_low_confidence(0.21) possibly_damaging(0.812) TCGA-IB-7651-01 7 100189512 100189512 G A FBXO24 Missense_Mutation p.R220H 0.17 tolerated_low_confidence(0.13) benign(0.031) TCGA-IB-7651-01 7 100190416 100190416 A G FBXO24 Missense_Mutation p.D228G 0.18 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-IB-7651-01 7 100190660 100190661 - T FBXO24 Intron 0.17 TCGA-IB-7651-01 7 100198522 100198522 A C FBXO24 Nonstop_Mutation p.*619Yext*5 0.05 TCGA-IB-7651-01 7 100200038 100200038 C T PCOLCE 5'UTR 0.20 TCGA-IB-7651-01 7 100201161 100201161 G A PCOLCE Silent p.T68T 0.11 TCGA-IB-7651-01 7 100210480 100210480 G A MOSPD3 Silent p.R22R 0.21 TCGA-IB-7651-01 7 100210841 100210841 A G MOSPD3 Missense_Mutation p.Y77C 0.20 deleterious(0) probably_damaging(0.959) TCGA-IB-7651-01 7 100284433 100284433 C T GIGYF1 Missense_Mutation p.G178D 0.16 tolerated(0.07) unknown(0) TCGA-IB-7651-01 7 100284964 100284964 G A GIGYF1 Nonsense_Mutation p.R147* 0.17 TCGA-IB-7651-01 7 100352880 100352880 C T ZAN Silent p.S1052S 0.18 TCGA-IB-7651-01 7 100364868 100364868 C T ZAN Silent p.G1616G 0.18 TCGA-IB-7651-01 7 100365518 100365518 G A ZAN Missense_Mutation p.S1642N 0.18 unknown(0) TCGA-IB-7651-01 7 100369522 100369522 C T ZAN Silent p.C1768C 0.19 TCGA-IB-7651-01 7 100389759 100389759 G T ZAN Missense_Mutation p.E2566D 0.13 unknown(0) TCGA-IB-7651-01 7 100404160 100404160 G A EPHB4 Missense_Mutation p.P789L 0.15 deleterious(0.01) possibly_damaging(0.732) TCGA-IB-7651-01 7 100420043 100420043 C T EPHB4 Missense_Mutation p.A220T 0.23 tolerated(0.08) benign(0.002) TCGA-IB-7651-01 7 100420110 100420110 G A EPHB4 Silent p.C197C 0.19 TCGA-IB-7651-01 7 100421510 100421510 C T EPHB4 Missense_Mutation p.R56H 0.13 tolerated(0.27) probably_damaging(0.999) TCGA-IB-7651-01 7 100465482 100465482 G T TRIP6 Splice_Site p.X37_splice 0.16 TCGA-IB-7651-01 7 100470879 100470879 C A TRIP6 Missense_Mutation p.A462D 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 100482962 100482962 C A SRRT Missense_Mutation p.P430T 0.23 deleterious(0) probably_damaging(0.981) TCGA-IB-7651-01 7 100488797 100488797 G A ACHE Silent p.S572S 0.18 TCGA-IB-7651-01 7 100490798 100490798 G T ACHE Missense_Mutation p.F352L 0.07 tolerated(0.22) probably_damaging(0.915) TCGA-IB-7651-01 7 100491402 100491402 C A ACHE Missense_Mutation p.G151V 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 100549596 100549596 T C MUC3A Silent p.G59G 0.15 TCGA-IB-7651-01 7 100663468 100663468 C A MUC17 Missense_Mutation p.L18I 0.24 benign(0.002) TCGA-IB-7651-01 7 100676247 100676247 C T MUC17 Missense_Mutation p.S517F 0.03 possibly_damaging(0.799) TCGA-IB-7651-01 7 100681006 100681006 A G MUC17 Silent p.L2103L 0.19 TCGA-IB-7651-01 7 100730866 100730866 T C TRIM56 Silent p.C91C 0.17 TCGA-IB-7651-01 7 100730929 100730929 C T TRIM56 Silent p.T112T 0.23 TCGA-IB-7651-01 7 100777156 100777156 G A SERPINE1 Missense_Mutation p.R294H 0.09 deleterious(0.03) probably_damaging(0.996) TCGA-IB-7651-01 7 100779051 100779051 C T SERPINE1 Silent p.N352N 0.15 TCGA-IB-7651-01 7 100802426 100802426 C A AP1S1 Silent p.T126T 0.22 TCGA-IB-7651-01 7 100842058 100842058 G A MOGAT3 Silent p.H114H 0.18 TCGA-IB-7651-01 7 100843573 100843573 G A MOGAT3 Missense_Mutation p.S77L 0.11 tolerated(0.62) benign(0.01) TCGA-IB-7651-01 7 100849363 100849363 G A PLOD3 3'UTR 0.13 TCGA-IB-7651-01 7 100859508 100859508 G A PLOD3 Silent p.P146P 0.21 TCGA-IB-7651-01 7 101256954 101256954 G T MYL10 Missense_Mutation p.F190L 0.14 deleterious(0.01) possibly_damaging(0.899) TCGA-IB-7651-01 7 101559470 101559470 G A CUX1 Missense_Mutation p.E47K 0.18 deleterious(0) unknown(0) TCGA-IB-7651-01 7 101747666 101747666 C T CUX1 Silent p.L164L 0.17 TCGA-IB-7651-01 7 101877361 101877361 G T CUX1 Missense_Mutation p.G1166W 0.14 deleterious(0) unknown(0) TCGA-IB-7651-01 7 101877433 101877433 C T CUX1 Nonsense_Mutation p.R1190* 0.23 TCGA-IB-7651-01 7 101916707 101916707 C T CUX1 Silent p.I440I 0.15 TCGA-IB-7651-01 7 101921318 101921318 G A CUX1 Silent p.L552L 0.11 TCGA-IB-7651-01 7 102098304 102098304 C T ALKBH4 Missense_Mutation p.R149Q 0.09 tolerated(0.73) benign(0.004) TCGA-IB-7651-01 7 102106440 102106440 C T LRWD1 Missense_Mutation p.A86V 0.10 tolerated(0.36) benign(0.002) TCGA-IB-7651-01 7 102107909 102107909 G A LRWD1 Missense_Mutation p.E186K 0.17 deleterious(0.04) benign(0.154) TCGA-IB-7651-01 7 102113476 102113476 G A LRWD1 Missense_Mutation p.A642T 0.16 tolerated(0.08) benign(0.077) TCGA-IB-7651-01 7 102114849 102114849 C T POLR2J Missense_Mutation p.D93N 0.13 deleterious(0.05) probably_damaging(1) TCGA-IB-7651-01 7 102524065 102524065 C T FBXL13 Missense_Mutation p.C392Y 0.17 tolerated(0.54) benign(0.001) TCGA-IB-7651-01 7 102760532 102760532 G T NAPEPLD Missense_Mutation p.L145I 0.23 tolerated(0.06) probably_damaging(0.951) TCGA-IB-7651-01 7 102912196 102912196 A C DPY19L2P2 RNA 0.22 TCGA-IB-7651-01 7 102967077 102967077 G T DNAJC2 Missense_Mutation p.P162H 0.15 deleterious(0.04) benign(0.234) TCGA-IB-7651-01 7 103008360 103008360 C T PSMC2 Silent p.S387S 0.15 TCGA-IB-7651-01 7 103014868 103014868 G A SLC26A5 Missense_Mutation p.T738I 0.22 tolerated_low_confidence(0.07) possibly_damaging(0.551) TCGA-IB-7651-01 7 103033451 103033451 G T SLC26A5 Missense_Mutation p.A345D 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 7 103138291 103138291 G A RELN Silent p.L2976L 0.13 TCGA-IB-7651-01 7 103138584 103138584 T C RELN Missense_Mutation p.Y2928C 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 7 103138682 103138682 G A RELN Silent p.R2895R 0.15 TCGA-IB-7651-01 7 103175782 103175782 G A RELN Missense_Mutation p.P2444S 0.15 deleterious(0.03) benign(0.021) TCGA-IB-7651-01 7 103191616 103191616 G T RELN Missense_Mutation p.S2067Y 0.11 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 7 103197551 103197551 G A RELN Silent p.I1890I 0.17 TCGA-IB-7651-01 7 103215993 103215993 A G RELN Splice_Site p.X1435_splice 0.14 TCGA-IB-7651-01 7 103276725 103276725 G A RELN Missense_Mutation p.R754W 0.20 deleterious(0.01) probably_damaging(0.947) TCGA-IB-7651-01 7 103292173 103292173 T C RELN Silent p.L609L 0.12 TCGA-IB-7651-01 7 103828724 103828724 C T ORC5 Missense_Mutation p.R220Q 0.17 deleterious(0) probably_damaging(0.925) TCGA-IB-7651-01 7 104377124 104377124 G A LHFPL3 Intron 0.13 TCGA-IB-7651-01 7 104742339 104742339 G T KMT2E Missense_Mutation p.A632S 0.06 tolerated(0.07) benign(0.021) TCGA-IB-7651-01 7 104752725 104752725 G A KMT2E Missense_Mutation p.A1508T 0.17 tolerated_low_confidence(0.13) benign(0.066) TCGA-IB-7651-01 7 105177065 105177065 G T RINT1 Missense_Mutation p.D48Y 0.18 deleterious_low_confidence(0) possibly_damaging(0.681) TCGA-IB-7651-01 7 105189035 105189035 G T RINT1 Nonsense_Mutation p.E292* 0.17 TCGA-IB-7651-01 7 105190563 105190563 A C RINT1 Missense_Mutation p.E353A 0.16 tolerated(0.06) benign(0.314) TCGA-IB-7651-01 7 105660870 105660870 A G CDHR3 Missense_Mutation p.N569D 0.17 tolerated(0.06) benign(0.008) TCGA-IB-7651-01 7 105901974 105901974 A G NAMPT Intron 0.17 TCGA-IB-7651-01 7 106508946 106508946 G A PIK3CG Missense_Mutation p.A314T 0.06 tolerated(0.52) benign(0.019) TCGA-IB-7651-01 7 106513018 106513018 G A PIK3CG Missense_Mutation p.A678T 0.20 deleterious(0) probably_damaging(0.956) TCGA-IB-7651-01 7 106513208 106513208 C T PIK3CG Silent p.A704A 0.16 TCGA-IB-7651-01 7 106762403 106762403 C T PRKAR2B Missense_Mutation p.A117V 0.15 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 7 106800089 106800089 G A PRKAR2B 3'UTR 0.17 TCGA-IB-7651-01 7 106820368 106820368 G A HBP1 Missense_Mutation p.M10I 0.07 deleterious_low_confidence(0.02) benign(0.004) TCGA-IB-7651-01 7 106842004 106842004 G A COG5 3'Flank 0.29 TCGA-IB-7651-01 7 107115881 107115881 C T GPR22 3'UTR 0.22 TCGA-IB-7651-01 7 107214206 107214206 C T DUS4L Missense_Mutation p.A99V 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 107315528 107315528 T C SLC26A4 Missense_Mutation p.Y247H 0.18 tolerated(0.55) benign(0.181) TCGA-IB-7651-01 7 107340571 107340571 C A SLC26A4 Missense_Mutation p.P553H 0.16 deleterious(0.02) probably_damaging(0.976) TCGA-IB-7651-01 7 107399574 107399574 C A CBLL1 Missense_Mutation p.P476H 0.17 deleterious(0.04) possibly_damaging(0.74) TCGA-IB-7651-01 7 107406225 107406225 T G SLC26A3 3'UTR 0.18 TCGA-IB-7651-01 7 107416898 107416898 G T SLC26A3 Missense_Mutation p.A559D 0.14 tolerated(0.06) possibly_damaging(0.9) TCGA-IB-7651-01 7 107416977 107416977 C A SLC26A3 Nonsense_Mutation p.E533* 0.18 TCGA-IB-7651-01 7 107423656 107423656 G A SLC26A3 Silent p.G371G 0.18 TCGA-IB-7651-01 7 107569959 107569959 C T LAMB1 Missense_Mutation p.R1548H 0.19 deleterious(0.04) probably_damaging(0.987) TCGA-IB-7651-01 7 107616323 107616323 C A LAMB1 Splice_Site p.X334_splice 0.20 TCGA-IB-7651-01 7 107626718 107626718 C T LAMB1 Missense_Mutation p.A172T 0.14 tolerated(0.22) benign(0.008) TCGA-IB-7651-01 7 107638873 107638873 C A LAMB1 Missense_Mutation p.S93I 0.15 deleterious(0) probably_damaging(0.972) TCGA-IB-7651-01 7 107677867 107677867 C T LAMB4 Missense_Mutation p.A1549T 0.15 tolerated(0.18) benign(0.006) TCGA-IB-7651-01 7 107706353 107706353 C T LAMB4 Missense_Mutation p.G897D 0.19 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 7 107743565 107743565 C T LAMB4 Silent p.G368G 0.17 TCGA-IB-7651-01 7 107790514 107790514 G A NRCAM Silent p.D1252D 0.19 TCGA-IB-7651-01 7 107825029 107825029 G T NRCAM Missense_Mutation p.H689N 0.17 tolerated(0.31) benign(0.004) TCGA-IB-7651-01 7 107831702 107831702 A C NRCAM Silent p.V643V 0.14 TCGA-IB-7651-01 7 108128376 108128376 C A PNPLA8 Missense_Mutation p.V569L 0.19 deleterious(0) probably_damaging(0.928) TCGA-IB-7651-01 7 108155556 108155556 G A PNPLA8 Missense_Mutation p.A127V 0.07 tolerated_low_confidence(0.16) benign(0.007) TCGA-IB-7651-01 7 108524165 108524165 G A C7orf66 Missense_Mutation p.H83Y 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.607) TCGA-IB-7651-01 7 10979739 10979739 C A NDUFA4 5'UTR 0.24 TCGA-IB-7651-01 7 110762985 110762985 G T LRRN3 Missense_Mutation p.V53L 0.12 deleterious(0) possibly_damaging(0.888) TCGA-IB-7651-01 7 111379299 111379299 G A DOCK4 Missense_Mutation p.A1699V 0.17 deleterious(0) benign(0.248) TCGA-IB-7651-01 7 111386404 111386404 G A DOCK4 Silent p.L1546L 0.16 TCGA-IB-7651-01 7 111422941 111422941 A G DOCK4 Silent p.I1179I 0.15 TCGA-IB-7651-01 7 111484842 111484842 G A DOCK4 Missense_Mutation p.R905W 0.15 deleterious(0) possibly_damaging(0.723) TCGA-IB-7651-01 7 111508079 111508079 C T DOCK4 Silent p.S747S 0.21 TCGA-IB-7651-01 7 111617186 111617186 C T DOCK4 Splice_Site p.X234_splice 0.16 TCGA-IB-7651-01 7 111936363 111936363 A G ZNF277 Silent p.R154R 0.12 TCGA-IB-7651-01 7 111979911 111979911 T G ZNF277 Missense_Mutation p.F327C 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 112095820 112095820 G A IFRD1 Missense_Mutation p.G33S 0.16 tolerated(0.21) benign(0.156) TCGA-IB-7651-01 7 112095877 112095877 A T IFRD1 Missense_Mutation p.S52C 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 112112901 112112901 T G IFRD1 Missense_Mutation p.I417M 0.10 deleterious(0) probably_damaging(0.985) TCGA-IB-7651-01 7 112129971 112129971 C T LSMEM1 Silent p.N121N 0.14 TCGA-IB-7651-01 7 112423788 112423788 G A TMEM168 Missense_Mutation p.L365F 0.18 tolerated(0.16) benign(0.002) TCGA-IB-7651-01 7 112424589 112424589 A G TMEM168 Missense_Mutation p.W98R 0.15 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 7 1131452 1131452 G A GPER1 Missense_Mutation p.E30K 0.13 tolerated_low_confidence(0.31) benign(0.002) TCGA-IB-7651-01 7 1131792 1131792 G A GPER1 Missense_Mutation p.S143N 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 113519452 113519452 C T PPP1R3A Silent p.L565L 0.14 TCGA-IB-7651-01 7 113519685 113519685 C A PPP1R3A Missense_Mutation p.D488Y 0.15 deleterious(0.02) probably_damaging(0.935) TCGA-IB-7651-01 7 113522121 113522121 T C PPP1R3A Silent p.E313E 0.06 TCGA-IB-7651-01 7 11415430 11415430 G A THSD7A Silent p.A1655A 0.09 TCGA-IB-7651-01 7 114269970 114269970 G A FOXP2 Silent p.Q194Q 0.14 TCGA-IB-7651-01 7 114282577 114282577 C A FOXP2 Silent p.S321S 0.10 TCGA-IB-7651-01 7 11446998 11446998 G T THSD7A Missense_Mutation p.P1284H 0.08 deleterious(0) possibly_damaging(0.853) TCGA-IB-7651-01 7 11457220 11457220 T G THSD7A Missense_Mutation p.N1132H 0.13 deleterious(0.01) probably_damaging(0.992) TCGA-IB-7651-01 7 114655944 114655944 C A MDFIC Nonsense_Mutation p.C341* 0.18 TCGA-IB-7651-01 7 115580909 115580909 A G TFEC Missense_Mutation p.V247A 0.16 tolerated(0.41) benign(0.148) TCGA-IB-7651-01 7 115580986 115580986 C A TFEC Splice_Site p.X222_splice 0.19 TCGA-IB-7651-01 7 115582018 115582018 T G TFEC Silent p.R198R 0.20 TCGA-IB-7651-01 7 115897544 115897544 G A TES 3'UTR 0.16 TCGA-IB-7651-01 7 11630195 11630195 C T THSD7A Missense_Mutation p.G449S 0.17 tolerated(0.42) benign(0.022) TCGA-IB-7651-01 7 11632901 11632901 A C THSD7A Missense_Mutation p.D417E 0.21 tolerated(0.71) benign(0.008) TCGA-IB-7651-01 7 116339490 116339490 A C MET Missense_Mutation p.M118L 0.04 tolerated(0.06) benign(0.001) TCGA-IB-7651-01 7 116340022 116340022 C A MET Missense_Mutation p.P295H 0.18 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 7 116381004 116381004 C T MET Silent p.H542H 0.19 TCGA-IB-7651-01 7 116403139 116403139 T C MET Silent p.C818C 0.19 TCGA-IB-7651-01 7 116411905 116411905 C A MET Missense_Mutation p.L982M 0.16 deleterious(0.05) probably_damaging(0.91) TCGA-IB-7651-01 7 116415084 116415084 C T MET Missense_Mutation p.P1078S 0.17 deleterious(0.04) probably_damaging(0.995) TCGA-IB-7651-01 7 11676485 11676485 G A THSD7A Silent p.N98N 0.18 TCGA-IB-7651-01 7 116937895 116937895 G A WNT2 Silent p.C208C 0.17 TCGA-IB-7651-01 7 116960776 116960776 C T WNT2 Missense_Mutation p.R52Q 0.19 tolerated(0.11) probably_damaging(0.994) TCGA-IB-7651-01 7 117304863 117304863 G A CFTR Missense_Mutation p.S1362N 0.06 tolerated(0.07) benign(0.004) TCGA-IB-7651-01 7 117361139 117361139 G A CTTNBP2 Missense_Mutation p.A1498V 0.14 tolerated(0.12) benign(0.008) TCGA-IB-7651-01 7 117368189 117368189 A G CTTNBP2 Missense_Mutation p.F1337L 0.09 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 7 117400555 117400555 T G CTTNBP2 Missense_Mutation p.T1036P 0.16 tolerated(0.08) benign(0.007) TCGA-IB-7651-01 7 117417759 117417759 G A CTTNBP2 Missense_Mutation p.L862F 0.15 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 7 117420533 117420533 A T CTTNBP2 Missense_Mutation p.L829M 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 117828431 117828431 G T NAA38 Nonsense_Mutation p.G58* 0.17 TCGA-IB-7651-01 7 119915287 119915287 G A KCND2 Missense_Mutation p.A201T 0.18 tolerated(0.26) benign(0.053) TCGA-IB-7651-01 7 119915676 119915676 G A KCND2 Silent p.S330S 0.19 TCGA-IB-7651-01 7 120428543 120428543 G A TSPAN12 3'UTR 0.18 TCGA-IB-7651-01 7 120596125 120596125 A G ING3 Intron 0.10 TCGA-IB-7651-01 7 121513480 121513480 T G PTPRZ1 5'UTR 0.22 TCGA-IB-7651-01 7 121568253 121568253 A C PTPRZ1 Missense_Mutation p.E34D 0.16 deleterious(0.01) possibly_damaging(0.676) TCGA-IB-7651-01 7 121652806 121652806 C T PTPRZ1 Silent p.L1236L 0.18 TCGA-IB-7651-01 7 121659225 121659225 T G PTPRZ1 Missense_Mutation p.L1631V 0.16 tolerated(0.2) benign(0.168) TCGA-IB-7651-01 7 121726195 121726195 G A AASS Silent p.A685A 0.19 TCGA-IB-7651-01 7 121738597 121738597 C A AASS Missense_Mutation p.G521V 0.20 tolerated(0.11) benign(0.016) TCGA-IB-7651-01 7 121769556 121769556 A G AASS Silent p.D82D 0.16 TCGA-IB-7651-01 7 121944232 121944232 T C FEZF1 Missense_Mutation p.K87R 0.16 tolerated(0.11) probably_damaging(0.986) TCGA-IB-7651-01 7 121944281 121944281 T C FEZF1 Missense_Mutation p.I71V 0.15 tolerated(0.12) benign(0.067) TCGA-IB-7651-01 7 122091518 122091518 A G CADPS2 Missense_Mutation p.I733T 0.16 deleterious(0.05) benign(0.032) TCGA-IB-7651-01 7 122342708 122342708 T G RNF148 Missense_Mutation p.N33H 0.13 deleterious(0.04) benign(0.087) TCGA-IB-7651-01 7 122635261 122635261 G T TAS2R16 Missense_Mutation p.P143H 0.15 tolerated(0.11) probably_damaging(0.985) TCGA-IB-7651-01 7 122635379 122635379 A G TAS2R16 Missense_Mutation p.C104R 0.15 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 7 122763231 122763231 C T SLC13A1 Nonsense_Mutation p.W433* 0.17 TCGA-IB-7651-01 7 122787315 122787315 C T SLC13A1 Missense_Mutation p.R237H 0.10 tolerated(0.1) benign(0.018) TCGA-IB-7651-01 7 123152119 123152119 C T IQUB Silent p.P92P 0.16 TCGA-IB-7651-01 7 123269055 123269055 C T ASB15 Missense_Mutation p.T336I 0.16 tolerated(0.16) benign(0.01) TCGA-IB-7651-01 7 123332856 123332856 C A WASL Missense_Mutation p.G298C 0.17 tolerated(0.12) unknown(0) TCGA-IB-7651-01 7 123508656 123508656 G T HYAL4 Missense_Mutation p.G110V 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 123516989 123516989 C T HYAL4 Missense_Mutation p.A409V 0.18 tolerated(0.27) benign(0.004) TCGA-IB-7651-01 7 124465393 124465393 G A POT1 Missense_Mutation p.P569S 0.14 tolerated(0.35) benign(0.138) TCGA-IB-7651-01 7 124483018 124483018 C A POT1 Splice_Site p.X336_splice 0.18 TCGA-IB-7651-01 7 126746697 126746697 G A GRM8 Nonsense_Mutation p.R194* 0.21 TCGA-IB-7651-01 7 12691470 12691470 T G SCIN Missense_Mutation p.F655C 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 127013819 127013819 C T ZNF800 Missense_Mutation p.C524Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 7 127014200 127014200 G T ZNF800 Missense_Mutation p.P397H 0.15 tolerated(0.09) possibly_damaging(0.533) TCGA-IB-7651-01 7 127014937 127014937 A G ZNF800 Silent p.D151D 0.15 TCGA-IB-7651-01 7 127223015 127223015 C A GCC1 Missense_Mutation p.D461Y 0.19 deleterious(0.01) benign(0.237) TCGA-IB-7651-01 7 127224482 127224482 T G GCC1 Missense_Mutation p.K252T 0.15 deleterious(0) probably_damaging(0.94) TCGA-IB-7651-01 7 127224652 127224652 C T GCC1 Silent p.Q195Q 0.18 TCGA-IB-7651-01 7 127225162 127225162 C T GCC1 Silent p.K25K 0.18 TCGA-IB-7651-01 7 127230185 127230185 G A ARF5 Silent p.Q108Q 0.16 TCGA-IB-7651-01 7 127235810 127235810 C A FSCN3 Missense_Mutation p.F198L 0.19 deleterious(0.01) benign(0.421) TCGA-IB-7651-01 7 127238595 127238595 G A FSCN3 Missense_Mutation p.R356H 0.17 deleterious(0.01) probably_damaging(0.956) TCGA-IB-7651-01 7 127255125 127255125 T C PAX4 Missense_Mutation p.I49V 0.17 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 7 12728429 12728429 G A ARL4A Missense_Mutation p.D184N 0.18 tolerated(0.19) benign(0.258) TCGA-IB-7651-01 7 127670198 127670198 C T LRRC4 Missense_Mutation p.A166T 0.12 tolerated(0.06) possibly_damaging(0.9) TCGA-IB-7651-01 7 127670753 127670753 C T LRRC4 5'UTR 0.14 TCGA-IB-7651-01 7 127721954 127721954 C A SND1 Intron 0.13 TCGA-IB-7651-01 7 127727023 127727023 C A SND1 Missense_Mutation p.L780I 0.14 tolerated(0.15) benign(0.342) TCGA-IB-7651-01 7 127954833 127954833 G A RBM28 Nonsense_Mutation p.R677* 0.14 TCGA-IB-7651-01 7 127970908 127970908 G A RBM28 Missense_Mutation p.R365C 0.18 deleterious(0.03) benign(0.037) TCGA-IB-7651-01 7 127975620 127975620 C T RBM28 Missense_Mutation p.S308N 0.20 tolerated(0.3) benign(0.002) TCGA-IB-7651-01 7 127978382 127978382 C T RBM28 Missense_Mutation p.G155S 0.13 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 128038646 128038646 T C IMPDH1 Missense_Mutation p.D299G 0.18 tolerated(0.09) benign(0.008) TCGA-IB-7651-01 7 128119557 128119557 G A METTL2B Missense_Mutation p.R183Q 0.06 deleterious(0) probably_damaging(0.952) TCGA-IB-7651-01 7 128394377 128394377 G T CALU Intron 0.16 TCGA-IB-7651-01 7 128407587 128407587 C T CALU Missense_Mutation p.R249W 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 128415770 128415770 C A OPN1SW Missense_Mutation p.Q25H 0.15 deleterious(0) probably_damaging(0.95) TCGA-IB-7651-01 7 128457910 128457910 C T CCDC136 Silent p.S1154S 0.15 TCGA-IB-7651-01 7 128481264 128481264 T C FLNC Silent p.C618C 0.17 TCGA-IB-7651-01 7 128489453 128489453 G A FLNC Missense_Mutation p.G1674S 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 128489608 128489608 C T FLNC Silent p.I1725I 0.15 TCGA-IB-7651-01 7 128494556 128494556 G A FLNC Missense_Mutation p.A2273T 0.28 tolerated(0.61) benign(0.01) TCGA-IB-7651-01 7 128496602 128496602 T C FLNC Missense_Mutation p.S2428P 0.12 tolerated(0.19) probably_damaging(0.999) TCGA-IB-7651-01 7 128496609 128496609 C T FLNC Missense_Mutation p.A2430V 0.17 tolerated(0.41) benign(0.257) TCGA-IB-7651-01 7 128505495 128505495 C T ATP6V1F Missense_Mutation p.R103W 0.15 deleterious(0.04) possibly_damaging(0.458) TCGA-IB-7651-01 7 128852143 128852143 C T SMO Missense_Mutation p.P739S 0.09 deleterious_low_confidence(0.03) benign(0.039) TCGA-IB-7651-01 7 129019543 129019543 C T AHCYL2 Missense_Mutation p.S143F 0.17 tolerated_low_confidence(0.08) probably_damaging(0.943) TCGA-IB-7651-01 7 129096370 129096370 C A STRIP2 Missense_Mutation p.Q309K 0.14 tolerated(0.64) benign(0.015) TCGA-IB-7651-01 7 129100202 129100202 C T STRIP2 Missense_Mutation p.P489S 0.21 deleterious(0) possibly_damaging(0.702) TCGA-IB-7651-01 7 129107205 129107205 G A STRIP2 Silent p.S597S 0.19 TCGA-IB-7651-01 7 129394908 129394908 G A NRF1 Missense_Mutation p.A467T 0.05 tolerated(0.35) benign(0.001) TCGA-IB-7651-01 7 129680929 129680929 C T ZC3HC1 Missense_Mutation p.A91T 0.21 tolerated(0.13) benign(0.018) TCGA-IB-7651-01 7 129856189 129856189 G T SSMEM1 Missense_Mutation p.R205I 0.16 deleterious(0.02) possibly_damaging(0.506) TCGA-IB-7651-01 7 130001054 130001054 G A CPA5 Missense_Mutation p.S168N 0.15 deleterious(0) probably_damaging(0.959) TCGA-IB-7651-01 7 130022008 130022008 G T CPA1 Missense_Mutation p.Q147H 0.17 tolerated(0.17) benign(0.006) TCGA-IB-7651-01 7 130027777 130027777 G A CPA1 Silent p.Q395Q 0.20 TCGA-IB-7651-01 7 130067795 130067795 C T CEP41 Splice_Site p.X33_splice 0.10 TCGA-IB-7651-01 7 130370055 130370055 T C TSGA13 5'UTR 0.17 TCGA-IB-7651-01 7 130418143 130418143 C T KLF14 Missense_Mutation p.D240N 0.14 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 7 131151154 131151154 G T MKLN1 Missense_Mutation p.K636N 0.16 deleterious(0.01) benign(0.258) TCGA-IB-7651-01 7 131189129 131189129 C T PODXL Missense_Mutation p.V540I 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 7 131189241 131189241 T C PODXL Silent p.T502T 0.15 TCGA-IB-7651-01 7 131196124 131196124 C T PODXL Missense_Mutation p.A57T 0.15 tolerated_low_confidence(0.13) benign(0.004) TCGA-IB-7651-01 7 131853310 131853310 G A PLXNA4 Missense_Mutation p.R1347C 0.08 deleterious(0.03) benign(0.007) TCGA-IB-7651-01 7 131859635 131859635 G T PLXNA4 Missense_Mutation p.L1307M 0.12 tolerated(0.31) probably_damaging(0.999) TCGA-IB-7651-01 7 131908351 131908351 G A PLXNA4 Missense_Mutation p.R678W 0.15 deleterious(0) possibly_damaging(0.895) TCGA-IB-7651-01 7 132193050 132193050 G A PLXNA4 Nonsense_Mutation p.Q135* 0.14 TCGA-IB-7651-01 7 132193105 132193105 C A PLXNA4 Missense_Mutation p.K116N 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 132470319 132470319 G T CHCHD3 3'UTR 0.18 TCGA-IB-7651-01 7 132959895 132959895 G A EXOC4 Missense_Mutation p.R82H 0.15 deleterious(0.01) probably_damaging(0.991) TCGA-IB-7651-01 7 133933760 133933760 A C LRGUK Missense_Mutation p.E710D 0.22 tolerated(0.15) benign(0.007) TCGA-IB-7651-01 7 133991519 133991519 C T SLC35B4 Missense_Mutation p.A67T 0.17 tolerated(0.16) benign(0.003) TCGA-IB-7651-01 7 134133231 134133231 T C AKR1B1 Silent p.P189P 0.08 TCGA-IB-7651-01 7 134133752 134133752 G T AKR1B1 Missense_Mutation p.N183K 0.18 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 7 134252965 134252965 G A AKR1B15 Missense_Mutation p.R69H 0.20 tolerated(0.1) benign(0.057) TCGA-IB-7651-01 7 134346540 134346540 C T BPGM Missense_Mutation p.A94V 0.16 deleterious(0.01) possibly_damaging(0.518) TCGA-IB-7651-01 7 134618572 134618572 G T CALD1 Missense_Mutation p.R351M 0.15 deleterious_low_confidence(0.03) unknown(0) TCGA-IB-7651-01 7 134849279 134849279 T C TMEM140 Missense_Mutation p.F29S 0.20 tolerated(0.11) benign(0.052) TCGA-IB-7651-01 7 134870861 134870861 G A WDR91 3'UTR 0.19 TCGA-IB-7651-01 7 134927583 134927583 C A STRA8 Silent p.T103T 0.10 TCGA-IB-7651-01 7 135079029 135079029 A G CNOT4 Missense_Mutation p.L423P 0.17 deleterious(0.03) probably_damaging(0.967) TCGA-IB-7651-01 7 135080489 135080489 G A CNOT4 Silent p.R342R 0.19 TCGA-IB-7651-01 7 135095279 135095279 C T CNOT4 Silent p.L269L 0.13 TCGA-IB-7651-01 7 135261869 135261869 G A NUP205 Missense_Mutation p.R214H 0.05 tolerated(0.1) probably_damaging(0.998) TCGA-IB-7651-01 7 135279294 135279294 G T NUP205 Splice_Site p.X611_splice 0.19 TCGA-IB-7651-01 7 135285644 135285644 G A NUP205 Silent p.E767E 0.13 TCGA-IB-7651-01 7 135292055 135292055 C T NUP205 Missense_Mutation p.T1044M 0.09 tolerated(0.05) possibly_damaging(0.817) TCGA-IB-7651-01 7 135376316 135376316 C T SLC13A4 Missense_Mutation p.C433Y 0.16 tolerated(0.11) benign(0.013) TCGA-IB-7651-01 7 135377191 135377191 A C SLC13A4 Intron 0.13 TCGA-IB-7651-01 7 136699928 136699928 G A CHRM2 Missense_Mutation p.V106I 0.17 deleterious(0.01) probably_damaging(0.954) TCGA-IB-7651-01 7 136700166 136700166 C A CHRM2 Missense_Mutation p.A185D 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 7 136700546 136700546 C A CHRM2 Missense_Mutation p.L312M 0.17 tolerated(0.14) possibly_damaging(0.516) TCGA-IB-7651-01 7 136700899 136700899 T C CHRM2 Silent p.C429C 0.18 TCGA-IB-7651-01 7 136848873 136848873 G A hsa-mir-490 Intron 0.18 TCGA-IB-7651-01 7 137154342 137154342 C T DGKI Silent p.R817R 0.12 TCGA-IB-7651-01 7 137269963 137269963 C T DGKI Missense_Mutation p.V519I 0.17 tolerated(0.18) benign(0.083) TCGA-IB-7651-01 7 137308289 137308289 T G DGKI Missense_Mutation p.Q272H 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 7 137565290 137565290 C T CREB3L2 Missense_Mutation p.A499T 0.17 tolerated_low_confidence(0.38) benign(0) TCGA-IB-7651-01 7 137569813 137569813 G A CREB3L2 Missense_Mutation p.P400S 0.19 tolerated(0.1) benign(0.107) TCGA-IB-7651-01 7 137612945 137612945 C T CREB3L2 Silent p.R90R 0.19 TCGA-IB-7651-01 7 138239457 138239457 G A TRIM24 Missense_Mutation p.E426K 0.17 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 7 138394541 138394541 C A ATP6V0A4 Splice_Site p.X753_splice 0.10 TCGA-IB-7651-01 7 138487859 138487859 G A TMEM213 3'UTR 0.16 TCGA-IB-7651-01 7 138522642 138522642 C T KIAA1549 3'UTR 0.15 TCGA-IB-7651-01 7 138529190 138529190 G A KIAA1549 Missense_Mutation p.S1775F 0.16 deleterious(0.01) possibly_damaging(0.907) TCGA-IB-7651-01 7 138529203 138529203 C T KIAA1549 Missense_Mutation p.G1771S 0.16 tolerated(0.12) benign(0.397) TCGA-IB-7651-01 7 138591671 138591671 C T KIAA1549 Missense_Mutation p.A1152T 0.16 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 7 138602176 138602176 C T KIAA1549 Silent p.A732A 0.19 TCGA-IB-7651-01 7 138602828 138602828 C T KIAA1549 Missense_Mutation p.S515N 0.19 tolerated(0.4) possibly_damaging(0.448) TCGA-IB-7651-01 7 138603632 138603632 C T KIAA1549 Missense_Mutation p.G247D 0.19 tolerated(0.05) benign(0.118) TCGA-IB-7651-01 7 138603904 138603904 C T KIAA1549 Silent p.E156E 0.15 TCGA-IB-7651-01 7 138711299 138711299 G A ZC3HAV1L Silent p.C298C 0.14 TCGA-IB-7651-01 7 138749734 138749734 C T ZC3HAV1 Silent p.R628R 0.17 TCGA-IB-7651-01 7 138768566 138768566 G A ZC3HAV1 Silent p.C219C 0.17 TCGA-IB-7651-01 7 138824680 138824680 C T TTC26 Silent p.V93V 0.18 TCGA-IB-7651-01 7 138936723 138936723 C T UBN2 Missense_Mutation p.R195W 0.15 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 7 138936758 138936758 C A UBN2 Silent p.G206G 0.14 TCGA-IB-7651-01 7 138946167 138946167 C T UBN2 Missense_Mutation p.P359S 0.15 deleterious(0.05) benign(0.001) TCGA-IB-7651-01 7 138968305 138968305 G A UBN2 Missense_Mutation p.S885N 0.10 deleterious_low_confidence(0.01) benign(0.069) TCGA-IB-7651-01 7 138978654 138978654 G T UBN2 Missense_Mutation p.Q1307H 0.12 tolerated_low_confidence(0.22) probably_damaging(0.993) TCGA-IB-7651-01 7 139092004 139092004 C T LUC7L2 Missense_Mutation p.L265F 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-IB-7651-01 7 139168360 139168360 C T KLRG2 Missense_Mutation p.G10E 0.17 tolerated_low_confidence(0.43) benign(0.007) TCGA-IB-7651-01 7 139226862 139226862 G A CLEC2L Silent p.P176P 0.11 TCGA-IB-7651-01 7 139285255 139285255 C A HIPK2 Missense_Mutation p.Q781H 0.16 deleterious(0.03) benign(0.334) TCGA-IB-7651-01 7 139299093 139299093 C A HIPK2 Missense_Mutation p.Q643H 0.16 deleterious(0.05) benign(0.015) TCGA-IB-7651-01 7 13935473 13935473 G A ETV1 3'UTR 0.18 TCGA-IB-7651-01 7 139416452 139416452 T G HIPK2 Missense_Mutation p.K128Q 0.12 tolerated(0.07) benign(0.045) TCGA-IB-7651-01 7 13946113 13946113 G A ETV1 Missense_Mutation p.S351F 0.20 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 7 139655298 139655298 G A TBXAS1 Missense_Mutation p.A241T 0.18 deleterious(0.03) possibly_damaging(0.595) TCGA-IB-7651-01 7 139727113 139727113 G A PARP12 Nonsense_Mutation p.R531* 0.19 TCGA-IB-7651-01 7 139829450 139829450 G A KDM7A Silent p.A134A 0.16 TCGA-IB-7651-01 7 140111711 140111711 G A RAB19 Missense_Mutation p.R80H 0.16 deleterious(0.02) possibly_damaging(0.834) TCGA-IB-7651-01 7 140156610 140156610 G A MKRN1 Silent p.S276S 0.16 TCGA-IB-7651-01 7 14025798 14025798 G A ETV1 Intron 0.21 TCGA-IB-7651-01 7 140302109 140302109 T C DENND2A Missense_Mutation p.N30S 0.17 tolerated_low_confidence(0.15) benign(0.004) TCGA-IB-7651-01 7 140373894 140373894 G A ADCK2 Missense_Mutation p.G255E 0.19 tolerated(0.48) benign(0.039) TCGA-IB-7651-01 7 140386814 140386814 G A ADCK2 Missense_Mutation p.A444T 0.18 deleterious(0) possibly_damaging(0.881) TCGA-IB-7651-01 7 141416030 141416030 C T WEE2 Missense_Mutation p.A183V 0.16 tolerated(0.1) benign(0.022) TCGA-IB-7651-01 7 141420796 141420796 C T WEE2 Missense_Mutation p.R274C 0.17 deleterious(0.01) benign(0.215) TCGA-IB-7651-01 7 141430103 141430103 C T WEE2 Missense_Mutation p.R563C 0.22 tolerated_low_confidence(0.05) benign(0) TCGA-IB-7651-01 7 141464292 141464292 G A TAS2R3 Missense_Mutation p.A112T 0.07 deleterious(0.01) possibly_damaging(0.723) TCGA-IB-7651-01 7 141464943 141464943 C A TAS2R3 3'UTR 0.20 TCGA-IB-7651-01 7 141672501 141672501 C T TAS2R38 Missense_Mutation p.R330Q 0.13 tolerated(0.2) benign(0.003) TCGA-IB-7651-01 7 141672855 141672855 G T TAS2R38 Missense_Mutation p.S212Y 0.16 deleterious(0) probably_damaging(0.958) TCGA-IB-7651-01 7 141954930 141954930 G A PRSS58 Silent p.I127I 0.18 TCGA-IB-7651-01 7 142000992 142000992 C T TRBV2 5'UTR 0.14 TCGA-IB-7651-01 7 142099627 142099627 C A TRBV7-8 Missense_Mutation p.G59W 0.14 deleterious(0.01) probably_damaging(0.987) TCGA-IB-7651-01 7 142099703 142099703 C A TRBV7-8 Missense_Mutation p.K33N 0.14 tolerated(0.09) benign(0.081) TCGA-IB-7651-01 7 142131888 142131888 G A TRBV5-6 5'UTR 0.12 TCGA-IB-7651-01 7 14216334 14216334 A C DGKB Intron 0.11 TCGA-IB-7651-01 7 142206946 142206946 G T TRBV10-2 Silent p.L5L 0.18 TCGA-IB-7651-01 7 142250985 142250985 G T TRBV6-4 Missense_Mutation p.A21D 0.20 deleterious(0.01) possibly_damaging(0.744) TCGA-IB-7651-01 7 142334683 142334683 C T TRBV20-1 Silent p.I35I 0.19 TCGA-IB-7651-01 7 142460283 142460283 C T PRSS1 Silent p.A152A 0.04 TCGA-IB-7651-01 7 142460861 142460861 C T PRSS1 Missense_Mutation p.A245V 0.13 deleterious(0.01) benign(0.01) TCGA-IB-7651-01 7 142480062 142480062 A G PRSS3P2 RNA 0.10 TCGA-IB-7651-01 7 142499034 142499034 C T TRBC2 Missense_Mutation p.S104L 0.09 deleterious_low_confidence(0.01) benign(0.217) TCGA-IB-7651-01 7 142564791 142564791 G A EPHB6 Missense_Mutation p.G572E 0.19 deleterious(0) probably_damaging(0.981) TCGA-IB-7651-01 7 142566809 142566809 T G EPHB6 Missense_Mutation p.F789C 0.13 deleterious(0.02) benign(0.013) TCGA-IB-7651-01 7 142572291 142572291 C T TRPV6 Missense_Mutation p.A469T 0.15 deleterious(0.01) possibly_damaging(0.775) TCGA-IB-7651-01 7 142575012 142575012 C T TRPV6 Missense_Mutation p.A124T 0.13 deleterious(0.01) probably_damaging(0.942) TCGA-IB-7651-01 7 142583301 142583301 C T TRPV6 5'UTR 0.15 TCGA-IB-7651-01 7 142605671 142605671 C T TRPV5 3'UTR 0.10 TCGA-IB-7651-01 7 142630723 142630723 C T TRPV5 5'UTR 0.13 TCGA-IB-7651-01 7 142639572 142639572 C T KEL Silent p.L662L 0.12 TCGA-IB-7651-01 7 142651023 142651023 G A KEL Silent p.D315D 0.10 TCGA-IB-7651-01 7 142655466 142655466 C T KEL Silent p.Q150Q 0.12 TCGA-IB-7651-01 7 142920107 142920107 C T TAS2R40 Silent p.H312H 0.21 TCGA-IB-7651-01 7 142991359 142991359 C A CASP2 Missense_Mutation p.P171H 0.17 tolerated(0.11) benign(0.383) TCGA-IB-7651-01 7 143001775 143001775 G A CASP2 Missense_Mutation p.A376T 0.13 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 7 143053714 143053714 G A FAM131B Missense_Mutation p.R338W 0.08 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 143079460 143079460 G T ZYX Nonsense_Mutation p.E110* 0.08 TCGA-IB-7651-01 7 143088579 143088579 G T EPHA1 Missense_Mutation p.L968I 0.16 tolerated(0.35) probably_damaging(0.999) TCGA-IB-7651-01 7 143091949 143091949 A G EPHA1 Silent p.F768F 0.16 TCGA-IB-7651-01 7 143096798 143096798 G A EPHA1 Missense_Mutation p.R261W 0.20 deleterious(0.01) benign(0.006) TCGA-IB-7651-01 7 143098600 143098600 G A EPHA1 Silent p.S83S 0.19 TCGA-IB-7651-01 7 143140633 143140633 G A TAS2R60 Missense_Mutation p.V30I 0.07 tolerated(0.19) benign(0.185) TCGA-IB-7651-01 7 143175206 143175206 G A TAS2R41 Missense_Mutation p.G81S 0.16 tolerated(0.28) benign(0.004) TCGA-IB-7651-01 7 143175313 143175313 C T TAS2R41 Silent p.H116H 0.07 TCGA-IB-7651-01 7 143453724 143453724 G T CTAGE6 Missense_Mutation p.S343Y 0.07 deleterious(0) possibly_damaging(0.452) TCGA-IB-7651-01 7 143632519 143632519 A G OR2F2 Missense_Mutation p.N65S 0.17 deleterious(0.03) probably_damaging(0.945) TCGA-IB-7651-01 7 143657759 143657759 A C OR2F1 Missense_Mutation p.E232D 0.21 tolerated(0.06) benign(0.049) TCGA-IB-7651-01 7 143701395 143701395 C T OR6B1 Silent p.Y102Y 0.18 TCGA-IB-7651-01 7 143772016 143772016 A C OR2A25 Missense_Mutation p.K235T 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 143792476 143792476 C A OR2A12 Silent p.S92S 0.19 TCGA-IB-7651-01 7 143806742 143806742 G A OR2A2 Missense_Mutation p.A23T 0.15 deleterious(0.01) benign(0.008) TCGA-IB-7651-01 7 143956692 143956692 C T OR2A7 Silent p.E10E 0.05 TCGA-IB-7651-01 7 144060197 144060197 C T ARHGEF5 Silent p.S145S 0.06 TCGA-IB-7651-01 7 144060720 144060720 C T ARHGEF5 Missense_Mutation p.P320S 0.06 tolerated(0.71) benign(0.012) TCGA-IB-7651-01 7 144061097 144061097 C T ARHGEF5 Silent p.S445S 0.05 TCGA-IB-7651-01 7 144097306 144097306 C T NOBOX Missense_Mutation p.R315H 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 144288631 144288631 G A TPK1 Missense_Mutation p.A129V 0.18 tolerated(0.06) benign(0.293) TCGA-IB-7651-01 7 146471401 146471401 G A CNTNAP2 Missense_Mutation p.V46M 0.12 tolerated(0.23) benign(0.002) TCGA-IB-7651-01 7 146536846 146536846 G A CNTNAP2 Nonsense_Mutation p.W84* 0.17 TCGA-IB-7651-01 7 147092868 147092868 G C CNTNAP2 Missense_Mutation p.D556H 0.15 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 7 1477814 1477814 G T MICALL2 Missense_Mutation p.L744M 0.23 tolerated(0.18) benign(0.11) TCGA-IB-7651-01 7 147844744 147844744 C T CNTNAP2 Missense_Mutation p.R906C 0.16 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 7 148311388 148311388 C T C7orf33 Silent p.N153N 0.07 TCGA-IB-7651-01 7 148454093 148454093 G A CUL1 Missense_Mutation p.D112N 0.20 tolerated(0.08) benign(0.35) TCGA-IB-7651-01 7 148504681 148504681 C T EZH2 3'UTR 0.29 TCGA-IB-7651-01 7 148507481 148507481 C A EZH2 Missense_Mutation p.R658I 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 148511157 148511157 A G EZH2 Missense_Mutation p.V582A 0.07 deleterious(0) benign(0.016) TCGA-IB-7651-01 7 148524275 148524275 C A EZH2 Missense_Mutation p.A237S 0.07 tolerated(0.25) benign(0.004) TCGA-IB-7651-01 7 148702352 148702352 C T PDIA4 Missense_Mutation p.S468N 0.20 tolerated(0.3) benign(0.045) TCGA-IB-7651-01 7 148718166 148718166 G A PDIA4 Silent p.D54D 0.16 TCGA-IB-7651-01 7 148768238 148768238 G A ZNF786 Silent p.C542C 0.16 TCGA-IB-7651-01 7 148800888 148800888 C A ZNF425 Missense_Mutation p.R692M 0.08 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 7 148801223 148801223 C A ZNF425 Missense_Mutation p.K580N 0.17 deleterious(0.01) probably_damaging(0.929) TCGA-IB-7651-01 7 148801589 148801589 G A ZNF425 Silent p.R458R 0.17 TCGA-IB-7651-01 7 148801594 148801594 T C ZNF425 Missense_Mutation p.M457V 0.18 deleterious(0.02) benign(0.262) TCGA-IB-7651-01 7 148801988 148801988 G A ZNF425 Silent p.S325S 0.15 TCGA-IB-7651-01 7 14880885 14880885 T G DGKB Missense_Mutation p.T2P 0.18 deleterious_low_confidence(0.02) benign(0.063) TCGA-IB-7651-01 7 148851044 148851044 A C ZNF398 Missense_Mutation p.E11A 0.17 deleterious(0.01) benign(0.174) TCGA-IB-7651-01 7 148851380 148851380 G T ZNF398 Missense_Mutation p.R123M 0.15 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 7 148921240 148921240 G A ZNF282 Missense_Mutation p.R506Q 0.31 tolerated(0.5) probably_damaging(0.953) TCGA-IB-7651-01 7 148921304 148921304 C T ZNF282 Silent p.F527F 0.21 TCGA-IB-7651-01 7 148951066 148951066 G T ZNF212 Nonsense_Mutation p.E350* 0.22 TCGA-IB-7651-01 7 148978788 148978788 G A ZNF783 Missense_Mutation p.G332E 0.20 tolerated(0.24) possibly_damaging(0.791) TCGA-IB-7651-01 7 148979385 148979385 G A ZNF783 Missense_Mutation p.R531H 0.29 tolerated_low_confidence(0.65) benign(0) TCGA-IB-7651-01 7 148984734 148984734 C A ZNF783 3'Flank 0.23 TCGA-IB-7651-01 7 149128930 149128930 G A ZNF777 Silent p.C811C 0.13 TCGA-IB-7651-01 7 149129742 149129742 G A ZNF777 Missense_Mutation p.R541C 0.18 tolerated(0.12) possibly_damaging(0.729) TCGA-IB-7651-01 7 149416710 149416710 G A KRBA1 5'UTR 0.12 TCGA-IB-7651-01 7 149419587 149419587 C T KRBA1 Missense_Mutation p.H181Y 0.20 tolerated(1) benign(0.004) TCGA-IB-7651-01 7 149462850 149462850 C T ZNF467 Silent p.A247A 0.11 TCGA-IB-7651-01 7 149467528 149467528 C T ZNF467 Splice_Site p.X51_splice 0.14 TCGA-IB-7651-01 7 149473515 149473515 G T ZNF467 5'Flank 0.19 TCGA-IB-7651-01 7 149473530 149473530 G A ZNF467 5'Flank 0.17 TCGA-IB-7651-01 7 149477527 149477527 A G SSPO RNA 0.12 TCGA-IB-7651-01 7 149481008 149481008 C T SSPO RNA 0.13 TCGA-IB-7651-01 7 149482714 149482714 G T SSPO RNA 0.15 TCGA-IB-7651-01 7 149489462 149489462 T C SSPO RNA 0.19 TCGA-IB-7651-01 7 149490411 149490411 C T SSPO RNA 0.15 TCGA-IB-7651-01 7 149499027 149499027 G A SSPO RNA 0.13 TCGA-IB-7651-01 7 149509003 149509003 G A SSPO RNA 0.13 TCGA-IB-7651-01 7 149514988 149514988 G T SSPO Splice_Site 0.21 TCGA-IB-7651-01 7 149520498 149520498 T G SSPO RNA 0.17 TCGA-IB-7651-01 7 149545235 149545235 G A ZNF862 Missense_Mutation p.R218Q 0.17 tolerated_low_confidence(1) benign(0.002) TCGA-IB-7651-01 7 149559064 149559064 G T ZNF862 Missense_Mutation p.D939Y 0.14 tolerated(0.73) benign(0.413) TCGA-IB-7651-01 7 149559262 149559262 T C ZNF862 Missense_Mutation p.F1005L 0.15 tolerated(0.1) benign(0.198) TCGA-IB-7651-01 7 149559356 149559356 C T ZNF862 Missense_Mutation p.T1036I 0.19 deleterious(0) probably_damaging(0.911) TCGA-IB-7651-01 7 149983532 149983532 G A ACTR3C Missense_Mutation p.A132V 0.16 tolerated(0.36) benign(0.001) TCGA-IB-7651-01 7 150068940 150068940 C A REPIN1 Missense_Mutation p.L261M 0.21 tolerated(0.14) probably_damaging(0.998) TCGA-IB-7651-01 7 150069954 150069954 G A REPIN1 Missense_Mutation p.A599T 0.18 deleterious(0.01) benign(0.006) TCGA-IB-7651-01 7 150094568 150094568 C T ZNF775 Silent p.G333G 0.13 TCGA-IB-7651-01 7 150094613 150094613 G T ZNF775 Missense_Mutation p.Q348H 0.16 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 7 150174701 150174701 G A GIMAP8 Missense_Mutation p.E611K 0.17 deleterious(0.04) possibly_damaging(0.849) TCGA-IB-7651-01 7 150417218 150417218 C A GIMAP1 Silent p.A42A 0.19 TCGA-IB-7651-01 7 150417696 150417696 G A GIMAP1 Missense_Mutation p.E202K 0.15 tolerated(1) benign(0.004) TCGA-IB-7651-01 7 150440033 150440033 A G GIMAP5 Missense_Mutation p.Y269C 0.16 tolerated(0.23) benign(0.001) TCGA-IB-7651-01 7 150554395 150554395 G A AOC1 Silent p.P279P 0.19 TCGA-IB-7651-01 7 150554912 150554912 C T AOC1 Silent p.L452L 0.12 TCGA-IB-7651-01 7 150554915 150554915 C T AOC1 Missense_Mutation p.R453W 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 150558089 150558089 C T AOC1 Missense_Mutation p.P683L 0.17 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 7 150648836 150648836 C T KCNH2 Missense_Mutation p.V549M 0.17 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 7 150648842 150648842 C T KCNH2 Missense_Mutation p.A547T 0.17 deleterious(0.03) probably_damaging(0.995) TCGA-IB-7651-01 7 150692340 150692340 C T NOS3 Missense_Mutation p.R70C 0.11 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 7 150695754 150695754 G A NOS3 Missense_Mutation p.V268M 0.11 deleterious(0.02) possibly_damaging(0.785) TCGA-IB-7651-01 7 150696357 150696357 C A NOS3 Missense_Mutation p.L346M 0.13 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 7 150696386 150696386 C T NOS3 Silent p.G355G 0.13 TCGA-IB-7651-01 7 150698688 150698688 C A NOS3 Silent p.T495T 0.15 TCGA-IB-7651-01 7 150704352 150704352 G T NOS3 Missense_Mutation p.Q700H 0.20 tolerated(0.1) benign(0.26) TCGA-IB-7651-01 7 150710326 150710326 G T NOS3 Missense_Mutation p.Q1038H 0.17 tolerated(0.06) benign(0.001) TCGA-IB-7651-01 7 150746403 150746403 T G ASIC3 Missense_Mutation p.F144C 0.19 deleterious(0.01) probably_damaging(0.922) TCGA-IB-7651-01 7 150772281 150772281 A G SLC4A2 Intron 0.17 TCGA-IB-7651-01 7 150775933 150775933 C T FASTK Silent p.L227L 0.20 TCGA-IB-7651-01 7 150776915 150776915 C T FASTK Silent p.Q59Q 0.25 TCGA-IB-7651-01 7 150837093 150837093 C T AGAP3 Missense_Mutation p.S565F 0.15 deleterious(0.02) possibly_damaging(0.851) TCGA-IB-7651-01 7 150839253 150839253 C T AGAP3 Nonsense_Mutation p.R655* 0.05 TCGA-IB-7651-01 7 150840658 150840658 T G AGAP3 Missense_Mutation p.V835G 0.17 deleterious(0) probably_damaging(0.972) TCGA-IB-7651-01 7 150846225 150846225 C A GBX1 Missense_Mutation p.E181D 0.19 tolerated(0.27) benign(0.007) TCGA-IB-7651-01 7 150864194 150864194 G A GBX1 Silent p.L148L 0.18 TCGA-IB-7651-01 7 150873210 150873210 C T ASB10 Missense_Mutation p.V465M 0.17 deleterious(0.02) benign(0.085) TCGA-IB-7651-01 7 150878501 150878501 C T ASB10 Missense_Mutation p.R210Q 0.19 tolerated(0.23) benign(0.009) TCGA-IB-7651-01 7 150884173 150884173 C T ASB10 Silent p.E15E 0.18 TCGA-IB-7651-01 7 150931242 150931242 C T CHPF2 Nonsense_Mutation p.R49* 0.07 TCGA-IB-7651-01 7 150935457 150935457 C T CHPF2 Missense_Mutation p.A670V 0.18 tolerated(0.1) benign(0.34) TCGA-IB-7651-01 7 150936233 150936233 G A SMARCD3 Missense_Mutation p.R470C 0.18 deleterious(0.01) benign(0.224) TCGA-IB-7651-01 7 151079024 151079024 C T WDR86 Silent p.A302A 0.15 TCGA-IB-7651-01 7 151097270 151097270 C A WDR86 Missense_Mutation p.S74I 0.08 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 7 151668056 151668056 G T GALNTL5 Nonsense_Mutation p.E92* 0.14 TCGA-IB-7651-01 7 151842259 151842259 T C KMT2C Missense_Mutation p.H4718R 0.19 probably_damaging(0.997) TCGA-IB-7651-01 7 151842307 151842307 G A KMT2C Missense_Mutation p.A4702V 0.20 probably_damaging(0.998) TCGA-IB-7651-01 7 151846148 151846148 A C KMT2C Missense_Mutation p.D4288E 0.08 possibly_damaging(0.646) TCGA-IB-7651-01 7 151859602 151859602 C T KMT2C Missense_Mutation p.S3687N 0.16 benign(0.005) TCGA-IB-7651-01 7 151878240 151878240 C A KMT2C Missense_Mutation p.R2235S 0.06 probably_damaging(0.998) TCGA-IB-7651-01 7 151878579 151878579 T C KMT2C Missense_Mutation p.I2122M 0.16 benign(0.017) TCGA-IB-7651-01 7 151878668 151878668 G T KMT2C Missense_Mutation p.P2093T 0.19 benign(0.24) TCGA-IB-7651-01 7 151879109 151879109 G T KMT2C Missense_Mutation p.P1946T 0.18 probably_damaging(0.91) TCGA-IB-7651-01 7 151884809 151884809 G A KMT2C Missense_Mutation p.P1595L 0.16 benign(0.044) TCGA-IB-7651-01 7 151884856 151884856 A G KMT2C Silent p.P1579P 0.15 TCGA-IB-7651-01 7 151891109 151891109 G A KMT2C Missense_Mutation p.P1549S 0.18 benign(0.006) TCGA-IB-7651-01 7 151945554 151945554 G A KMT2C Silent p.V655V 0.16 TCGA-IB-7651-01 7 152345697 152345697 A T XRCC2 3'UTR 0.15 TCGA-IB-7651-01 7 1525021 1525021 C T INTS1 Missense_Mutation p.D1021N 0.15 tolerated(0.21) benign(0.004) TCGA-IB-7651-01 7 1525106 1525106 C A INTS1 Splice_Site p.X993_splice 0.16 TCGA-IB-7651-01 7 1538957 1538957 C A INTS1 Missense_Mutation p.S295I 0.16 deleterious(0.03) benign(0.012) TCGA-IB-7651-01 7 1542716 1542716 C T INTS1 Missense_Mutation p.R57H 0.19 deleterious(0) possibly_damaging(0.883) TCGA-IB-7651-01 7 154379458 154379458 C T DPP6 Intron 0.11 TCGA-IB-7651-01 7 154596655 154596655 C T DPP6 Missense_Mutation p.R510W 0.20 deleterious(0) probably_damaging(0.925) TCGA-IB-7651-01 7 154684753 154684753 C A DPP6 3'UTR 0.16 TCGA-IB-7651-01 7 154767875 154767875 T G PAXIP1 Missense_Mutation p.E202A 0.11 tolerated(0.55) possibly_damaging(0.719) TCGA-IB-7651-01 7 154863025 154863025 G A HTR5A Missense_Mutation p.R139H 0.21 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 7 154863096 154863096 G A HTR5A Missense_Mutation p.A163T 0.07 tolerated(0.16) benign(0.04) TCGA-IB-7651-01 7 154863212 154863212 C T HTR5A Silent p.A201A 0.15 TCGA-IB-7651-01 7 154863276 154863276 A T HTR5A Missense_Mutation p.I223F 0.14 deleterious(0) probably_damaging(0.969) TCGA-IB-7651-01 7 155093360 155093360 G T INSIG1 Missense_Mutation p.R166L 0.19 deleterious(0) probably_damaging(0.978) TCGA-IB-7651-01 7 155301652 155301652 T G CNPY1 Missense_Mutation p.K27N 0.20 tolerated(0.21) possibly_damaging(0.719) TCGA-IB-7651-01 7 155504066 155504066 C T RBM33 Missense_Mutation p.T373I 0.14 deleterious(0.01) possibly_damaging(0.702) TCGA-IB-7651-01 7 155556568 155556568 G A RBM33 Silent p.P1014P 0.18 TCGA-IB-7651-01 7 155559212 155559212 C T RBM33 Missense_Mutation p.R1080C 0.11 deleterious(0) unknown(0) TCGA-IB-7651-01 7 15599824 15599824 C A AGMO Missense_Mutation p.G67C 0.21 tolerated(0.18) benign(0.353) TCGA-IB-7651-01 7 15601487 15601487 T C AGMO 5'UTR 0.18 TCGA-IB-7651-01 7 156436485 156436485 G A RNF32 Intron 0.20 TCGA-IB-7651-01 7 156468427 156468427 A C RNF32 Missense_Mutation p.N241T 0.15 tolerated(0.16) benign(0.015) TCGA-IB-7651-01 7 156468458 156468458 C T RNF32 Silent p.I251I 0.16 TCGA-IB-7651-01 7 156555863 156555863 C T LMBR1 Nonsense_Mutation p.W186* 0.10 TCGA-IB-7651-01 7 156589187 156589187 C A LMBR1 Splice_Site p.X107_splice 0.18 TCGA-IB-7651-01 7 156745239 156745240 - A NOM1 Frame_Shift_Ins p.E356Gfs*15 0.16 TCGA-IB-7651-01 7 156803024 156803024 G A MNX1 Silent p.F7F 0.17 TCGA-IB-7651-01 7 156974923 156974923 C A UBE3C Missense_Mutation p.L298M 0.16 deleterious(0.01) probably_damaging(0.985) TCGA-IB-7651-01 7 158424211 158424211 A T NCAPG2 3'UTR 0.15 TCGA-IB-7651-01 7 158448052 158448052 C T NCAPG2 Silent p.L828L 0.16 TCGA-IB-7651-01 7 158457323 158457323 C A NCAPG2 Missense_Mutation p.E533D 0.15 deleterious(0.02) probably_damaging(0.995) TCGA-IB-7651-01 7 158473475 158473475 G A NCAPG2 Missense_Mutation p.R320W 0.07 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 7 158534454 158534454 C T ESYT2 Missense_Mutation p.G670D 0.17 tolerated(0.37) benign(0.005) TCGA-IB-7651-01 7 158672615 158672615 C T WDR60 Missense_Mutation p.H272Y 0.24 tolerated(0.12) possibly_damaging(0.634) TCGA-IB-7651-01 7 158677270 158677270 A C WDR60 Missense_Mutation p.N299H 0.07 tolerated(0.3) benign(0.013) TCGA-IB-7651-01 7 158835849 158835849 C T VIPR2 Silent p.R158R 0.17 TCGA-IB-7651-01 7 158851209 158851209 A G VIPR2 Missense_Mutation p.S140P 0.16 deleterious(0) possibly_damaging(0.896) TCGA-IB-7651-01 7 1590537 1590537 C T TMEM184A Missense_Mutation p.A101T 0.23 deleterious(0.03) possibly_damaging(0.499) TCGA-IB-7651-01 7 1590563 1590563 C T TMEM184A Missense_Mutation p.R92H 0.14 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 7 16818722 16818722 T C TSPAN13 Missense_Mutation p.L174P 0.22 deleterious(0) probably_damaging(0.975) TCGA-IB-7651-01 7 16834575 16834575 C T AGR2 Missense_Mutation p.A155T 0.15 tolerated(0.46) benign(0.001) TCGA-IB-7651-01 7 17838675 17838675 G T SNX13 Missense_Mutation p.L801I 0.16 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 7 17841237 17841237 G A SNX13 Nonsense_Mutation p.R758* 0.17 TCGA-IB-7651-01 7 17874457 17874457 A G SNX13 Missense_Mutation p.L464S 0.10 tolerated(0.16) benign(0.115) TCGA-IB-7651-01 7 17915361 17915361 A C SNX13 Missense_Mutation p.F165V 0.16 tolerated(0.14) possibly_damaging(0.45) TCGA-IB-7651-01 7 18066654 18066654 C A PRPS1L1 Missense_Mutation p.G251V 0.17 deleterious(0) probably_damaging(0.93) TCGA-IB-7651-01 7 18067034 18067034 G A PRPS1L1 Silent p.I124I 0.20 TCGA-IB-7651-01 7 18630049 18630049 G A HDAC9 Missense_Mutation p.E119K 0.27 deleterious(0.02) probably_damaging(0.972) TCGA-IB-7651-01 7 18631230 18631230 T C HDAC9 Silent p.N169N 0.07 TCGA-IB-7651-01 7 18687510 18687510 A G HDAC9 Missense_Mutation p.S380G 0.15 tolerated(0.34) benign(0.001) TCGA-IB-7651-01 7 18801889 18801889 G T HDAC9 Missense_Mutation p.R718M 0.18 deleterious(0.01) probably_damaging(0.951) TCGA-IB-7651-01 7 19744544 19744544 C T TWISTNB Splice_Site p.X85_splice 0.16 TCGA-IB-7651-01 7 19748552 19748552 C A TWISTNB Nonsense_Mutation p.E30* 0.06 TCGA-IB-7651-01 7 19765216 19765216 C T TMEM196 Missense_Mutation p.R127Q 0.39 deleterious(0.03) unknown(0) TCGA-IB-7651-01 7 20199174 20199174 G A MACC1 Silent p.S270S 0.19 TCGA-IB-7651-01 7 2041733 2041733 C A MAD1L1 Missense_Mutation p.E461D 0.19 deleterious(0.01) probably_damaging(0.973) TCGA-IB-7651-01 7 20418715 20418715 A G ITGB8 Missense_Mutation p.K144E 0.20 deleterious(0.04) benign(0.371) TCGA-IB-7651-01 7 20418775 20418775 G A ITGB8 Missense_Mutation p.E164K 0.16 tolerated(0.14) possibly_damaging(0.908) TCGA-IB-7651-01 7 20420382 20420382 A C ITGB8 Missense_Mutation p.R243S 0.10 deleterious(0.04) benign(0.019) TCGA-IB-7651-01 7 20682918 20682918 G T ABCB5 Missense_Mutation p.Q142H 0.17 tolerated(0.44) possibly_damaging(0.482) TCGA-IB-7651-01 7 20682938 20682938 C A ABCB5 Missense_Mutation p.A149E 0.14 deleterious(0.01) benign(0.096) TCGA-IB-7651-01 7 20683249 20683249 T C ABCB5 Silent p.C224C 0.09 TCGA-IB-7651-01 7 20706381 20706382 - A ABCB5 Intron 0.15 TCGA-IB-7651-01 7 20795190 20795190 G A ABCB5 Silent p.E1239E 0.20 TCGA-IB-7651-01 7 21521598 21521598 G A SP4 Missense_Mutation p.G655D 0.17 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 7 21630818 21630818 G A DNAH11 Missense_Mutation p.D764N 0.15 benign(0.005) TCGA-IB-7651-01 7 21639415 21639415 A C DNAH11 Missense_Mutation p.K893T 0.18 benign(0.015) TCGA-IB-7651-01 7 21640477 21640477 G A DNAH11 Missense_Mutation p.D1062N 0.19 benign(0.27) TCGA-IB-7651-01 7 21659634 21659634 C T DNAH11 Nonsense_Mutation p.R1485* 0.16 TCGA-IB-7651-01 7 21678582 21678582 G A DNAH11 Missense_Mutation p.A1620T 0.17 benign(0.069) TCGA-IB-7651-01 7 21805045 21805045 G A DNAH11 Splice_Site p.X2988_splice 0.07 TCGA-IB-7651-01 7 22190035 22190035 G A RAPGEF5 Missense_Mutation p.A472V 0.17 tolerated(0.52) benign(0.098) TCGA-IB-7651-01 7 22206738 22206738 C T RAPGEF5 Silent p.T258T 0.14 TCGA-IB-7651-01 7 22233125 22233125 C T RAPGEF5 Intron 0.25 TCGA-IB-7651-01 7 22767180 22767180 C A IL6 Missense_Mutation p.P46Q 0.16 tolerated(0.19) benign(0.019) TCGA-IB-7651-01 7 22985591 22985592 - T FAM126A Frame_Shift_Ins p.E395Rfs*22 0.19 TCGA-IB-7651-01 7 23236306 23236306 C A NUPL2 Missense_Mutation p.S177Y 0.19 deleterious(0) benign(0.275) TCGA-IB-7651-01 7 23349053 23349053 A G MALSU1 Missense_Mutation p.Y199C 0.18 deleterious(0) benign(0.315) TCGA-IB-7651-01 7 23391009 23391009 G A IGF2BP3 Silent p.L200L 0.18 TCGA-IB-7651-01 7 23391064 23391064 C T IGF2BP3 Silent p.R181R 0.17 TCGA-IB-7651-01 7 23556038 23556038 G A TRA2A Nonsense_Mutation p.R94* 0.24 TCGA-IB-7651-01 7 23650947 23650947 A T CCDC126 Missense_Mutation p.I5F 0.18 tolerated_low_confidence(0.61) benign(0.002) TCGA-IB-7651-01 7 23749932 23749932 G T STK31 Missense_Mutation p.A10S 0.20 tolerated_low_confidence(0.45) benign(0.008) TCGA-IB-7651-01 7 23775265 23775265 G A STK31 Missense_Mutation p.D198N 0.19 deleterious(0.02) possibly_damaging(0.855) TCGA-IB-7651-01 7 23792445 23792445 A C STK31 Missense_Mutation p.E376A 0.17 deleterious(0.02) benign(0.018) TCGA-IB-7651-01 7 24325010 24325010 G A NPY Missense_Mutation p.A51T 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 24329150 24329150 T G NPY Missense_Mutation p.I74S 0.19 deleterious(0.05) benign(0.263) TCGA-IB-7651-01 7 24663381 24663381 C A MPP6 Missense_Mutation p.P32H 0.16 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 7 2473533 2473533 G A CHST12 3'UTR 0.21 TCGA-IB-7651-01 7 2473603 2473603 C A CHST12 3'UTR 0.24 TCGA-IB-7651-01 7 24749866 24749866 C T DFNA5 Missense_Mutation p.G280E 0.14 tolerated(0.45) benign(0.01) TCGA-IB-7651-01 7 24888729 24888729 C T OSBPL3 Missense_Mutation p.D409N 0.12 deleterious(0.03) benign(0.064) TCGA-IB-7651-01 7 25175523 25175523 G A C7orf31 3'UTR 0.24 TCGA-IB-7651-01 7 25175542 25175542 T G C7orf31 3'UTR 0.13 TCGA-IB-7651-01 7 25181949 25181949 G T C7orf31 Missense_Mutation p.L288M 0.15 tolerated(0.09) probably_damaging(0.941) TCGA-IB-7651-01 7 2559814 2559814 G A LFNG Missense_Mutation p.A107T 0.19 tolerated(0.17) benign(0.02) TCGA-IB-7651-01 7 26225340 26225340 A C NFE2L3 Silent p.I674I 0.19 TCGA-IB-7651-01 7 26251332 26251332 T C CBX3 Silent p.I127I 0.19 TCGA-IB-7651-01 7 26404691 26404691 A C SNX10 Missense_Mutation p.K79N 0.20 deleterious(0.01) possibly_damaging(0.902) TCGA-IB-7651-01 7 2697971 2697971 G A TTYH3 Silent p.A434A 0.17 TCGA-IB-7651-01 7 27140427 27140427 C T HOXA2 Missense_Mutation p.S350N 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 7 27147792 27147792 T C HOXA3 Silent p.P358P 0.20 TCGA-IB-7651-01 7 27147987 27147987 C T HOXA3 Silent p.S293S 0.20 TCGA-IB-7651-01 7 27150088 27150088 C T HOXA3 Missense_Mutation p.A58T 0.21 tolerated(0.68) benign(0.081) TCGA-IB-7651-01 7 27150148 27150148 C T HOXA3 Missense_Mutation p.A38T 0.16 tolerated(0.66) benign(0.01) TCGA-IB-7651-01 7 27168806 27168806 C T HOXA4 3'UTR 0.19 TCGA-IB-7651-01 7 27170305 27170305 C T HOXA4 Silent p.K16K 0.19 TCGA-IB-7651-01 7 27182814 27182814 C A HOXA5 Missense_Mutation p.S138I 0.17 tolerated(0.48) benign(0) TCGA-IB-7651-01 7 27183274 27183274 C T HOXA5 5'UTR 0.16 TCGA-IB-7651-01 7 27204771 27204771 C T HOXA9 Silent p.A102A 0.19 TCGA-IB-7651-01 7 27222562 27222562 G A HOXA11 Silent p.Y265Y 0.18 TCGA-IB-7651-01 7 27224786 27224786 C T HOXA11 5'UTR 0.07 TCGA-IB-7651-01 7 27239044 27239044 G A HOXA13 Missense_Mutation p.A218V 0.20 deleterious(0.03) possibly_damaging(0.569) TCGA-IB-7651-01 7 27283025 27283025 A G EVX1 Missense_Mutation p.S126G 0.07 tolerated(1) benign(0.108) TCGA-IB-7651-01 7 27284774 27284774 G A EVX1 Missense_Mutation p.A179T 0.21 tolerated(0.16) benign(0.436) TCGA-IB-7651-01 7 2752047 2752047 G A AMZ1 Silent p.P344P 0.11 TCGA-IB-7651-01 7 27565856 27565856 G T HIBADH Missense_Mutation p.L330I 0.21 deleterious(0.02) possibly_damaging(0.86) TCGA-IB-7651-01 7 27669044 27669044 C T HIBADH Missense_Mutation p.A144T 0.15 deleterious(0.03) possibly_damaging(0.603) TCGA-IB-7651-01 7 27824902 27824902 G T TAX1BP1 Missense_Mutation p.A245S 0.17 deleterious(0.03) possibly_damaging(0.841) TCGA-IB-7651-01 7 2946265 2946265 G A CARD11 3'UTR 0.17 TCGA-IB-7651-01 7 2952980 2952980 G A CARD11 Missense_Mutation p.T987M 0.20 tolerated(0.08) benign(0.199) TCGA-IB-7651-01 7 29552224 29552224 T G CHN2 Missense_Mutation p.L427R 0.19 deleterious(0) benign(0.079) TCGA-IB-7651-01 7 2974175 2974175 G A CARD11 Missense_Mutation p.S477F 0.15 deleterious(0.01) probably_damaging(0.943) TCGA-IB-7651-01 7 29963631 29963631 G A SCRN1 Missense_Mutation p.A416V 0.19 tolerated(0.27) benign(0.116) TCGA-IB-7651-01 7 29963698 29963698 C A SCRN1 Nonsense_Mutation p.E394* 0.20 TCGA-IB-7651-01 7 29983622 29983622 C T SCRN1 Missense_Mutation p.G192E 0.18 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 7 29983760 29983760 G T SCRN1 Missense_Mutation p.A146D 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 30100541 30100541 C A PLEKHA8 Missense_Mutation p.L361I 0.18 tolerated(0.24) benign(0.05) TCGA-IB-7651-01 7 30174882 30174882 C A MTURN Missense_Mutation p.L44M 0.13 deleterious_low_confidence(0.03) probably_damaging(0.934) TCGA-IB-7651-01 7 30490965 30490965 C T NOD1 Missense_Mutation p.A690T 0.20 deleterious(0.04) probably_damaging(0.998) TCGA-IB-7651-01 7 30491717 30491717 C A NOD1 Missense_Mutation p.S439I 0.09 tolerated(0.15) benign(0.002) TCGA-IB-7651-01 7 30496420 30496420 G T NOD1 Missense_Mutation p.L40M 0.20 tolerated(0.08) probably_damaging(0.958) TCGA-IB-7651-01 7 30638502 30638502 C A GARS Missense_Mutation p.L105M 0.17 deleterious(0.02) probably_damaging(0.989) TCGA-IB-7651-01 7 30640803 30640803 G A GARS Missense_Mutation p.E186K 0.21 deleterious(0) probably_damaging(0.933) TCGA-IB-7651-01 7 30656818 30656818 G A GARS Missense_Mutation p.R428H 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 30693138 30693138 A G CRHR2 Missense_Mutation p.S419P 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 7 30793510 30793510 C A INMT Missense_Mutation p.D106E 0.17 deleterious(0) possibly_damaging(0.589) TCGA-IB-7651-01 7 30876373 30876373 T C FAM188B Missense_Mutation p.V411A 0.24 tolerated(0.29) benign(0.002) TCGA-IB-7651-01 7 31016139 31016139 G A GHRHR Missense_Mutation p.R357H 0.19 deleterious(0.03) possibly_damaging(0.67) TCGA-IB-7651-01 7 31378244 31378244 G A NEUROD6 Silent p.S213S 0.16 TCGA-IB-7651-01 7 31618023 31618023 G T CCDC129 Missense_Mutation p.G408V 0.16 tolerated(0.14) benign(0.056) TCGA-IB-7651-01 7 31682312 31682312 A C CCDC129 Missense_Mutation p.N469T 0.16 tolerated(0.29) benign(0.003) TCGA-IB-7651-01 7 31682321 31682321 G T CCDC129 Missense_Mutation p.S472I 0.08 deleterious(0.02) benign(0.273) TCGA-IB-7651-01 7 31682385 31682385 C T CCDC129 Silent p.D493D 0.18 TCGA-IB-7651-01 7 31912902 31912902 G A PDE1C Intron 0.18 TCGA-IB-7651-01 7 32529857 32529857 G T LSM5 Intron 0.13 TCGA-IB-7651-01 7 32598658 32598658 C T AVL9 Missense_Mutation p.T266I 0.20 tolerated(0.16) benign(0.016) TCGA-IB-7651-01 7 32910180 32910180 G A KBTBD2 Missense_Mutation p.L217F 0.08 tolerated(0.51) probably_damaging(0.972) TCGA-IB-7651-01 7 32957123 32957123 A C RP9P RNA 0.16 TCGA-IB-7651-01 7 33057137 33057137 C T NT5C3A Missense_Mutation p.D208N 0.19 deleterious(0.03) probably_damaging(0.945) TCGA-IB-7651-01 7 34101630 34101630 G A BMPER Missense_Mutation p.R350K 0.14 tolerated(0.21) benign(0.124) TCGA-IB-7651-01 7 34118487 34118487 T C BMPER Missense_Mutation p.V366A 0.16 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 7 35284653 35284653 C A TBX20 Missense_Mutation p.D188Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 7 35293166 35293166 C T TBX20 Silent p.A22A 0.18 TCGA-IB-7651-01 7 36194638 36194638 A G EEPD1 Silent p.P235P 0.17 TCGA-IB-7651-01 7 36324351 36324351 C T EEPD1 Silent p.D366D 0.20 TCGA-IB-7651-01 7 36336643 36336643 C T EEPD1 Missense_Mutation p.P453S 0.20 deleterious(0.01) possibly_damaging(0.812) TCGA-IB-7651-01 7 36370598 36370598 A C KIAA0895 Missense_Mutation p.L466R 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-IB-7651-01 7 36373480 36373480 C A KIAA0895 Missense_Mutation p.D431Y 0.07 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 7 36446155 36446155 G A ANLN Missense_Mutation p.A285T 0.17 tolerated(0.19) benign(0.002) TCGA-IB-7651-01 7 36464161 36464161 G A ANLN Missense_Mutation p.V871I 0.13 tolerated(0.19) probably_damaging(0.994) TCGA-IB-7651-01 7 36489433 36489433 C A ANLN Missense_Mutation p.L1080I 0.20 deleterious(0.01) probably_damaging(0.978) TCGA-IB-7651-01 7 36895162 36895162 A G ELMO1 Silent p.C726C 0.04 TCGA-IB-7651-01 7 36901286 36901286 A C ELMO1 Missense_Mutation p.F654C 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 7 37264604 37264604 T A ELMO1 Missense_Mutation p.D194V 0.15 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 7 37955920 37955920 G A SFRP4 Missense_Mutation p.R74C 0.12 tolerated(0.1) possibly_damaging(0.825) TCGA-IB-7651-01 7 37988649 37988649 C A EPDR1 Silent p.S159S 0.21 TCGA-IB-7651-01 7 38254645 38254645 G A STARD3NL Missense_Mutation p.R107Q 0.18 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 7 38299575 38299575 A G TRGC1 3'UTR 0.21 TCGA-IB-7651-01 7 38299581 38299581 G A TRGC1 3'UTR 0.16 TCGA-IB-7651-01 7 38403008 38403008 T C TRGV2 5'UTR 0.17 TCGA-IB-7651-01 7 38475924 38475924 G A AMPH Missense_Mutation p.P361L 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 7 38502604 38502604 C T AMPH Missense_Mutation p.A287T 0.18 tolerated(0.07) possibly_damaging(0.79) TCGA-IB-7651-01 7 38543262 38543262 C A AMPH Missense_Mutation p.A65S 0.07 tolerated(0.13) possibly_damaging(0.868) TCGA-IB-7651-01 7 38725552 38725552 C A FAM183B Missense_Mutation p.Q18H 0.20 tolerated(0.12) benign(0.075) TCGA-IB-7651-01 7 39991439 39991439 G T CDK13 Missense_Mutation p.S400I 0.14 deleterious(0) benign(0.184) TCGA-IB-7651-01 7 4002385 4002385 G A SDK1 Missense_Mutation p.R444H 0.20 tolerated(0.2) benign(0.009) TCGA-IB-7651-01 7 4011159 4011159 G A SDK1 Silent p.T592T 0.09 TCGA-IB-7651-01 7 40172540 40172540 G T MPLKIP 3'UTR 0.22 TCGA-IB-7651-01 7 40234621 40234621 A C SUGCT Missense_Mutation p.D156A 0.16 tolerated(0.37) benign(0.012) TCGA-IB-7651-01 7 40498706 40498706 G T SUGCT Missense_Mutation p.D306Y 0.16 deleterious(0) possibly_damaging(0.477) TCGA-IB-7651-01 7 4091441 4091441 C A SDK1 Missense_Mutation p.L964M 0.15 deleterious(0.03) benign(0.193) TCGA-IB-7651-01 7 42005103 42005103 C T GLI3 Missense_Mutation p.A1190T 0.21 tolerated(0.17) benign(0.011) TCGA-IB-7651-01 7 42005127 42005127 G A GLI3 Missense_Mutation p.R1182W 0.16 tolerated(0.24) possibly_damaging(0.863) TCGA-IB-7651-01 7 42005592 42005592 G T GLI3 Missense_Mutation p.L1027I 0.20 deleterious(0.02) probably_damaging(0.977) TCGA-IB-7651-01 7 4213928 4213928 C T SDK1 Silent p.A1625A 0.18 TCGA-IB-7651-01 7 4285374 4285374 C T SDK1 Silent p.N2106N 0.17 TCGA-IB-7651-01 7 42949409 42949409 G A C7orf25 Missense_Mutation p.T422M 0.12 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 7 42949837 42949837 C T C7orf25 Silent p.Q279Q 0.19 TCGA-IB-7651-01 7 42949923 42949923 C T C7orf25 Missense_Mutation p.V251I 0.17 tolerated(0.52) benign(0.175) TCGA-IB-7651-01 7 42950303 42950303 C T C7orf25 Missense_Mutation p.S124N 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-IB-7651-01 7 42957219 42957219 C A PSMA2 Missense_Mutation p.R220M 0.22 tolerated(0.05) benign(0.141) TCGA-IB-7651-01 7 42959629 42959629 A G PSMA2 Intron 0.21 TCGA-IB-7651-01 7 43483972 43483972 G C HECW1 Missense_Mutation p.V401L 0.16 tolerated_low_confidence(0.45) benign(0.002) TCGA-IB-7651-01 7 43484460 43484460 C T HECW1 Silent p.I563I 0.15 TCGA-IB-7651-01 7 43484963 43484963 C T HECW1 Missense_Mutation p.T731M 0.04 deleterious_low_confidence(0.05) probably_damaging(0.999) TCGA-IB-7651-01 7 43590119 43590119 C T HECW1 Missense_Mutation p.R1442C 0.14 deleterious(0.01) probably_damaging(0.977) TCGA-IB-7651-01 7 43843295 43843295 C T BLVRA Missense_Mutation p.R161W 0.17 deleterious(0.02) possibly_damaging(0.802) TCGA-IB-7651-01 7 43846790 43846790 G A BLVRA Missense_Mutation p.G283R 0.21 tolerated(0.36) benign(0.164) TCGA-IB-7651-01 7 43917061 43917061 C T URGCP Silent p.T667T 0.17 TCGA-IB-7651-01 7 43982682 43982682 A G UBE2D4 Intron 0.22 TCGA-IB-7651-01 7 44100559 44100559 C A DBNL 3'UTR 0.16 TCGA-IB-7651-01 7 44118348 44118348 C A POLM Missense_Mutation p.Q235H 0.16 deleterious(0) possibly_damaging(0.868) TCGA-IB-7651-01 7 44144435 44144435 G A AEBP1 Silent p.P57P 0.14 TCGA-IB-7651-01 7 44148713 44148714 - A AEBP1 Frame_Shift_Ins p.E345Gfs*52 0.18 TCGA-IB-7651-01 7 44153429 44153429 C T AEBP1 Nonsense_Mutation p.R1016* 0.18 TCGA-IB-7651-01 7 44153432 44153432 C T AEBP1 Missense_Mutation p.R1017C 0.19 deleterious(0.03) possibly_damaging(0.689) TCGA-IB-7651-01 7 44153526 44153526 C T AEBP1 Missense_Mutation p.T1048I 0.11 deleterious_low_confidence(0.01) benign(0.029) TCGA-IB-7651-01 7 44154541 44154541 G T POLD2 Missense_Mutation p.P418H 0.11 deleterious(0.04) possibly_damaging(0.469) TCGA-IB-7651-01 7 44187283 44187283 C T GCK Missense_Mutation p.V278M 0.04 deleterious(0) probably_damaging(0.922) TCGA-IB-7651-01 7 44425626 44425626 C T NUDCD3 Missense_Mutation p.G357E 0.08 deleterious(0) probably_damaging(0.984) TCGA-IB-7651-01 7 44467174 44467174 T G NUDCD3 Missense_Mutation p.K213T 0.18 deleterious(0) probably_damaging(0.935) TCGA-IB-7651-01 7 44561319 44561319 G A NPC1L1 Missense_Mutation p.S982L 0.17 deleterious(0) probably_damaging(0.93) TCGA-IB-7651-01 7 44561836 44561836 C T NPC1L1 Silent p.S881S 0.20 TCGA-IB-7651-01 7 44578520 44578520 C A NPC1L1 Missense_Mutation p.Q492H 0.21 deleterious(0) probably_damaging(0.928) TCGA-IB-7651-01 7 44579675 44579675 C A NPC1L1 Missense_Mutation p.K107N 0.12 tolerated(0.06) possibly_damaging(0.537) TCGA-IB-7651-01 7 44579904 44579904 C T NPC1L1 Missense_Mutation p.G31D 0.20 tolerated(0.07) possibly_damaging(0.87) TCGA-IB-7651-01 7 44611245 44611245 G T DDX56 Missense_Mutation p.L246I 0.17 deleterious(0.04) possibly_damaging(0.838) TCGA-IB-7651-01 7 44612246 44612246 C T DDX56 Missense_Mutation p.E161K 0.17 deleterious(0.03) benign(0.088) TCGA-IB-7651-01 7 44621144 44621144 C T TMED4 Silent p.E97E 0.17 TCGA-IB-7651-01 7 44685096 44685096 G A OGDH Silent p.Q131Q 0.19 TCGA-IB-7651-01 7 44687259 44687259 C T OGDH Nonsense_Mutation p.R140* 0.11 TCGA-IB-7651-01 7 44747483 44747483 C A OGDH Missense_Mutation p.A986D 0.08 deleterious(0.01) benign(0.386) TCGA-IB-7651-01 7 44747498 44747498 C T OGDH Missense_Mutation p.A991V 0.18 deleterious(0.01) possibly_damaging(0.584) TCGA-IB-7651-01 7 44805040 44805040 C T ZMIZ2 Missense_Mutation p.R702C 0.20 deleterious(0) possibly_damaging(0.787) TCGA-IB-7651-01 7 44807123 44807123 G A ZMIZ2 Silent p.P888P 0.14 TCGA-IB-7651-01 7 45009400 45009400 G A MYO1G Silent p.D469D 0.18 TCGA-IB-7651-01 7 45010479 45010479 G A MYO1G Silent p.G342G 0.15 TCGA-IB-7651-01 7 45104190 45104190 C T CCM2 Silent p.I160I 0.17 TCGA-IB-7651-01 7 45109511 45109511 G A CCM2 Silent p.A253A 0.14 TCGA-IB-7651-01 7 45113169 45113169 C T CCM2 Missense_Mutation p.T326M 0.21 deleterious(0) probably_damaging(0.928) TCGA-IB-7651-01 7 45145255 45145255 A G TBRG4 Missense_Mutation p.W174R 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 7 45148815 45148815 G A TBRG4 Nonsense_Mutation p.R8* 0.09 TCGA-IB-7651-01 7 45614617 45614617 G A ADCY1 Missense_Mutation p.A159T 0.21 tolerated(0.17) benign(0.002) TCGA-IB-7651-01 7 45701749 45701749 G A ADCY1 Missense_Mutation p.C514Y 0.11 deleterious(0) possibly_damaging(0.873) TCGA-IB-7651-01 7 45753338 45753338 T G ADCY1 Missense_Mutation p.F1035C 0.19 deleterious(0.01) benign(0.314) TCGA-IB-7651-01 7 47317697 47317697 T C TNS3 Missense_Mutation p.I1439V 0.19 deleterious(0.02) probably_damaging(0.997) TCGA-IB-7651-01 7 47333423 47333423 C T TNS3 Missense_Mutation p.G1227E 0.17 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 7 47342835 47342835 G A TNS3 Missense_Mutation p.A1057V 0.10 tolerated(0.31) benign(0.005) TCGA-IB-7651-01 7 47384365 47384365 T G TNS3 Missense_Mutation p.K880Q 0.20 tolerated(0.17) benign(0.006) TCGA-IB-7651-01 7 47859172 47859172 A G C7orf69 Missense_Mutation p.N116D 0.20 tolerated_low_confidence(0.18) possibly_damaging(0.486) TCGA-IB-7651-01 7 47886656 47886656 G A PKD1L1 Silent p.G1658G 0.26 TCGA-IB-7651-01 7 47906046 47906046 A G PKD1L1 Missense_Mutation p.S1355P 0.17 deleterious(0.01) probably_damaging(0.949) TCGA-IB-7651-01 7 47979804 47979804 C T PKD1L1 Missense_Mutation p.A91T 0.17 deleterious_low_confidence(0.03) benign(0.013) TCGA-IB-7651-01 7 48018022 48018022 C T HUS1 Missense_Mutation p.V117M 0.17 deleterious(0.02) possibly_damaging(0.666) TCGA-IB-7651-01 7 4820858 4820858 C A AP5Z1 Missense_Mutation p.L32M 0.15 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 48259027 48259027 G A ABCA13 Missense_Mutation p.A122T 0.23 benign(0.158) TCGA-IB-7651-01 7 48259051 48259051 G A ABCA13 Missense_Mutation p.D130N 0.20 benign(0.002) TCGA-IB-7651-01 7 48311809 48311809 A C ABCA13 Missense_Mutation p.K849T 0.17 benign(0.006) TCGA-IB-7651-01 7 48313692 48313692 G A ABCA13 Missense_Mutation p.V1477I 0.15 benign(0.025) TCGA-IB-7651-01 7 48314629 48314629 A G ABCA13 Missense_Mutation p.E1789G 0.20 probably_damaging(0.952) TCGA-IB-7651-01 7 48317894 48317894 C T ABCA13 Missense_Mutation p.A2368V 0.13 benign(0.005) TCGA-IB-7651-01 7 48378016 48378016 G A ABCA13 Missense_Mutation p.D3390N 0.11 possibly_damaging(0.884) TCGA-IB-7651-01 7 4841394 4841394 C T RADIL Missense_Mutation p.G911D 0.16 tolerated(0.19) benign(0.013) TCGA-IB-7651-01 7 48556458 48556458 C T ABCA13 Missense_Mutation p.A4593V 0.19 possibly_damaging(0.589) TCGA-IB-7651-01 7 4874574 4874574 C T RADIL Silent p.Q360Q 0.13 TCGA-IB-7651-01 7 4874821 4874821 C T RADIL Missense_Mutation p.R278Q 0.16 tolerated(0.16) possibly_damaging(0.611) TCGA-IB-7651-01 7 4899539 4899539 G T PAPOLB Missense_Mutation p.L634I 0.18 tolerated_low_confidence(0.1) benign(0.006) TCGA-IB-7651-01 7 4900560 4900560 C T PAPOLB Silent p.R293R 0.18 TCGA-IB-7651-01 7 4946919 4946919 C T MMD2 3'UTR 0.22 TCGA-IB-7651-01 7 49842318 49842318 C T VWC2 Silent p.C236C 0.17 TCGA-IB-7651-01 7 50444294 50444294 G T IKZF1 Missense_Mutation p.G75V 0.21 deleterious(0.05) benign(0.439) TCGA-IB-7651-01 7 50444451 50444451 C T IKZF1 Silent p.I127I 0.15 TCGA-IB-7651-01 7 50459558 50459558 C A IKZF1 Missense_Mutation p.L241I 0.18 tolerated(0.36) benign(0.006) TCGA-IB-7651-01 7 50468219 50468219 G T IKZF1 Missense_Mutation p.G443V 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 7 50685801 50685801 C T GRB10 Silent p.Q271Q 0.20 TCGA-IB-7651-01 7 50694671 50694671 A C GRB10 Missense_Mutation p.V170G 0.19 deleterious(0.01) probably_damaging(0.988) TCGA-IB-7651-01 7 50778592 50778592 C T GRB10 Intron 0.13 TCGA-IB-7651-01 7 51092833 51092833 G A COBL Silent p.S1247S 0.16 TCGA-IB-7651-01 7 51095503 51095503 G A COBL Missense_Mutation p.P1097L 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 5254093 5254093 T G WIPI2 Intron 0.20 TCGA-IB-7651-01 7 5254106 5254106 C T WIPI2 Intron 0.21 TCGA-IB-7651-01 7 5269261 5269261 A G WIPI2 Missense_Mutation p.T382A 0.17 tolerated(0.81) benign(0) TCGA-IB-7651-01 7 5339001 5339001 C T SLC29A4 Silent p.G384G 0.09 TCGA-IB-7651-01 7 5340232 5340232 C T SLC29A4 Silent p.F463F 0.20 TCGA-IB-7651-01 7 5342584 5342584 A G SLC29A4 3'UTR 0.15 TCGA-IB-7651-01 7 5352415 5352415 C A TNRC18 Missense_Mutation p.A2703S 0.10 unknown(0) TCGA-IB-7651-01 7 5401540 5401540 C T TNRC18 Missense_Mutation p.R1507H 0.13 probably_damaging(0.997) TCGA-IB-7651-01 7 5430201 5430201 C T TNRC18 Silent p.E134E 0.15 TCGA-IB-7651-01 7 54612463 54612463 C T VSTM2A Silent p.A76A 0.35 TCGA-IB-7651-01 7 54825203 54825203 T G SEC61G Missense_Mutation p.K27Q 0.19 deleterious(0) benign(0.086) TCGA-IB-7651-01 7 5521531 5521531 C T FBXL18 Missense_Mutation p.V678I 0.16 deleterious(0.05) benign(0.037) TCGA-IB-7651-01 7 55240761 55240761 C T EGFR Nonsense_Mutation p.R669* 0.17 TCGA-IB-7651-01 7 55249101 55249101 A G EGFR Missense_Mutation p.D800G 0.19 deleterious(0) possibly_damaging(0.895) TCGA-IB-7651-01 7 5540606 5540606 C T FBXL18 Missense_Mutation p.A432T 0.10 tolerated(0.79) benign(0.002) TCGA-IB-7651-01 7 5568999 5568999 G T ACTB Silent p.S52S 0.13 TCGA-IB-7651-01 7 55750500 55750500 C T RNU6-389P 5'Flank 0.05 TCGA-IB-7651-01 7 56051523 56051523 G A GBAS Missense_Mutation p.G183R 0.14 deleterious(0) possibly_damaging(0.594) TCGA-IB-7651-01 7 56125777 56125777 T C CCT6A Missense_Mutation p.S236P 0.16 deleterious(0.03) possibly_damaging(0.586) TCGA-IB-7651-01 7 56130837 56130837 G A CCT6A 3'UTR 0.18 TCGA-IB-7651-01 7 56151035 56151035 G A PHKG1 Silent p.N193N 0.15 TCGA-IB-7651-01 7 56155329 56155329 A G PHKG1 Missense_Mutation p.V75A 0.19 deleterious(0.04) benign(0.358) TCGA-IB-7651-01 7 56155447 56155447 G A PHKG1 Nonsense_Mutation p.R36* 0.21 TCGA-IB-7651-01 7 57187947 57187947 C T ZNF479 Missense_Mutation p.R392H 0.14 tolerated(0.61) possibly_damaging(0.57) TCGA-IB-7651-01 7 57188788 57188788 G A ZNF479 Missense_Mutation p.P112S 0.14 deleterious(0.02) benign(0.005) TCGA-IB-7651-01 7 57509928 57509928 C T ZNF716 5'UTR 0.28 TCGA-IB-7651-01 7 57509975 57509975 C A ZNF716 5'UTR 0.16 TCGA-IB-7651-01 7 57528762 57528762 C T ZNF716 Missense_Mutation p.R199C 0.14 tolerated(0.08) benign(0.032) TCGA-IB-7651-01 7 57529401 57529401 G T ZNF716 Nonsense_Mutation p.E412* 0.10 TCGA-IB-7651-01 7 5754711 5754711 G T RNF216 Silent p.A602A 0.05 TCGA-IB-7651-01 7 5967749 5967749 C T RSPH10B Intron 0.10 TCGA-IB-7651-01 7 5984795 5984795 G A RSPH10B Missense_Mutation p.P477S 0.11 tolerated(0.1) benign(0.411) TCGA-IB-7651-01 7 6017283 6017283 G A PMS2 Missense_Mutation p.P794L 0.13 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 6017315 6017315 G A PMS2 Silent p.V783V 0.11 TCGA-IB-7651-01 7 6027116 6027116 C T PMS2 Missense_Mutation p.R427H 0.15 tolerated(0.93) benign(0.001) TCGA-IB-7651-01 7 6035166 6035166 T G PMS2 Missense_Mutation p.K301T 0.18 deleterious(0) possibly_damaging(0.896) TCGA-IB-7651-01 7 6045573 6045573 G A PMS2 Missense_Mutation p.A38V 0.20 tolerated(0.05) probably_damaging(1) TCGA-IB-7651-01 7 6196451 6196451 G T USP42 Missense_Mutation p.K1236N 0.16 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 7 6205375 6205375 T G CYTH3 Missense_Mutation p.E297A 0.17 deleterious(0.03) probably_damaging(0.963) TCGA-IB-7651-01 7 624175 624175 C T PRKAR1B Missense_Mutation p.E247K 0.11 tolerated(0.15) benign(0.084) TCGA-IB-7651-01 7 6370120 6370120 C A FAM220A Missense_Mutation p.K222N 0.15 deleterious(0.04) possibly_damaging(0.634) TCGA-IB-7651-01 7 6370157 6370157 C T FAM220A Missense_Mutation p.R210H 0.05 tolerated(0.57) benign(0.361) TCGA-IB-7651-01 7 63720670 63720670 G T ZNF679 Missense_Mutation p.Q37H 0.16 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 7 63727090 63727090 C A ZNF679 Missense_Mutation p.A360D 0.15 deleterious(0.02) possibly_damaging(0.743) TCGA-IB-7651-01 7 64023338 64023338 C T ZNF680 5'UTR 0.15 TCGA-IB-7651-01 7 64168445 64168445 C A ZNF107 Missense_Mutation p.A588D 0.16 deleterious(0.02) benign(0.06) TCGA-IB-7651-01 7 64389058 64389058 T G ZNF273 Missense_Mutation p.I451S 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-IB-7651-01 7 64437397 64437397 T C ZNF117 3'UTR 0.21 TCGA-IB-7651-01 7 64437475 64437475 G T ZNF117 3'UTR 0.18 TCGA-IB-7651-01 7 64438227 64438227 T C ZNF117 3'UTR 0.19 TCGA-IB-7651-01 7 64438880 64438880 C T ZNF117 Missense_Mutation p.G357R 0.15 deleterious(0.05) probably_damaging(0.917) TCGA-IB-7651-01 7 64452444 64452444 C T ERV3-1 Missense_Mutation p.A321T 0.15 tolerated(0.53) benign(0.276) TCGA-IB-7651-01 7 64467091 64467091 G A ERV3-1 5'Flank 0.17 TCGA-IB-7651-01 7 6452623 6452623 G A DAGLB Silent p.L490L 0.15 TCGA-IB-7651-01 7 6474563 6474563 G T DAGLB Missense_Mutation p.P170T 0.18 tolerated(0.48) benign(0.015) TCGA-IB-7651-01 7 64838815 64838815 G A ZNF92 5'UTR 0.15 TCGA-IB-7651-01 7 6485682 6485682 G T DAGLB Missense_Mutation p.A50D 0.22 tolerated(0.63) benign(0.146) TCGA-IB-7651-01 7 65220610 65220610 T G SNORA22 RNA 0.19 TCGA-IB-7651-01 7 6523680 6523680 A C KDELR2 Missense_Mutation p.I3M 0.19 deleterious(0.02) benign(0.042) TCGA-IB-7651-01 7 66270342 66270342 C T KCTD7 Nonsense_Mutation p.R346* 0.10 TCGA-IB-7651-01 7 66274251 66274251 C T KCTD7 Missense_Mutation p.P486S 0.15 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 7 6628372 6628372 A G ZDHHC4 Missense_Mutation p.E289G 0.05 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 7 66489989 66489989 G A TYW1 Missense_Mutation p.D322N 0.19 tolerated(0.95) benign(0.001) TCGA-IB-7651-01 7 66514984 66514984 G A TYW1 Missense_Mutation p.G345R 0.15 tolerated(0.08) benign(0.005) TCGA-IB-7651-01 7 6662260 6662260 C T ZNF853 Silent p.C546C 0.27 TCGA-IB-7651-01 7 66660217 66660217 C T TYW1 Missense_Mutation p.H624Y 0.20 deleterious(0) benign(0.091) TCGA-IB-7651-01 7 66767872 66767872 G A STAG3L4 Intron 0.19 TCGA-IB-7651-01 7 6730700 6730700 G A ZNF12 Nonsense_Mutation p.R625* 0.17 TCGA-IB-7651-01 7 6786764 6786764 C T PMS2CL RNA 0.31 TCGA-IB-7651-01 7 70231115 70231115 G A AUTS2 Missense_Mutation p.R495Q 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 7 70231305 70231305 G A AUTS2 Silent p.T558T 0.10 TCGA-IB-7651-01 7 70239029 70239029 G A AUTS2 Missense_Mutation p.D616N 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 7 70255978 70255978 G A AUTS2 Missense_Mutation p.R1259Q 0.13 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 7 71177142 71177142 C A WBSCR17 3'UTR 0.19 TCGA-IB-7651-01 7 720210 720210 C T PRKAR1B Missense_Mutation p.V111M 0.17 tolerated(0.1) probably_damaging(0.983) TCGA-IB-7651-01 7 72277809 72277809 G A TYW1B Silent p.I191I 0.09 TCGA-IB-7651-01 7 72361506 72361506 C A POM121 5'UTR 0.18 TCGA-IB-7651-01 7 72412786 72412786 G A POM121 Missense_Mutation p.A487T 0.21 tolerated(0.88) benign(0.034) TCGA-IB-7651-01 7 72413259 72413259 G A POM121 Silent p.T644T 0.31 TCGA-IB-7651-01 7 72413455 72413455 G A POM121 Missense_Mutation p.A710T 0.17 tolerated(0.78) benign(0.004) TCGA-IB-7651-01 7 72413671 72413671 T G POM121 Missense_Mutation p.F782V 0.13 deleterious(0.04) probably_damaging(0.969) TCGA-IB-7651-01 7 72419542 72419542 G A POM121 3'UTR 0.15 TCGA-IB-7651-01 7 72420111 72420111 G T POM121 3'UTR 0.22 TCGA-IB-7651-01 7 72420627 72420627 G T POM121 3'UTR 0.11 TCGA-IB-7651-01 7 72436296 72436296 G A TRIM74 Silent p.R131R 0.11 TCGA-IB-7651-01 7 72657481 72657481 G A GTF2IRD2P1 RNA 0.18 TCGA-IB-7651-01 7 72721672 72721672 G A NSUN5 Missense_Mutation p.A100V 0.23 deleterious(0.01) possibly_damaging(0.781) TCGA-IB-7651-01 7 72734178 72734178 C T TRIM50 Missense_Mutation p.A155T 0.14 tolerated(0.14) benign(0.007) TCGA-IB-7651-01 7 72738607 72738607 A G TRIM50 Missense_Mutation p.V60A 0.19 deleterious(0.04) benign(0.021) TCGA-IB-7651-01 7 72754785 72754785 C A FKBP6 Missense_Mutation p.A245D 0.09 deleterious(0) possibly_damaging(0.847) TCGA-IB-7651-01 7 72849343 72849343 C T FZD9 Missense_Mutation p.L336F 0.18 tolerated(0.13) probably_damaging(0.998) TCGA-IB-7651-01 7 72849501 72849501 C A FZD9 Nonsense_Mutation p.C388* 0.09 TCGA-IB-7651-01 7 72987671 72987671 C T TBL2 Missense_Mutation p.D193N 0.16 tolerated(1) benign(0) TCGA-IB-7651-01 7 73010506 73010506 G A MLXIPL Missense_Mutation p.L679F 0.20 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 7 73012016 73012016 C T MLXIPL Missense_Mutation p.D367N 0.07 tolerated(0.14) probably_damaging(0.989) TCGA-IB-7651-01 7 73151260 73151260 G T ABHD11 Missense_Mutation p.H272N 0.20 tolerated(0.38) benign(0.01) TCGA-IB-7651-01 7 73183818 73183818 C T CLDN3 Missense_Mutation p.E188K 0.10 tolerated(0.13) benign(0.001) TCGA-IB-7651-01 7 73184141 73184141 C T CLDN3 Missense_Mutation p.R80H 0.07 deleterious(0.02) probably_damaging(1) TCGA-IB-7651-01 7 73184317 73184317 G A CLDN3 Silent p.I21I 0.18 TCGA-IB-7651-01 7 73470641 73470641 C T ELN Silent p.Y397Y 0.18 TCGA-IB-7651-01 7 73523282 73523282 C T LIMK1 Silent p.I400I 0.15 TCGA-IB-7651-01 7 73609630 73609630 C T EIF4H Nonsense_Mutation p.Q247* 0.15 TCGA-IB-7651-01 7 73753262 73753262 G A CLIP2 Silent p.S202S 0.16 TCGA-IB-7651-01 7 73768325 73768325 C T CLIP2 Missense_Mutation p.A265V 0.18 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 7 73790432 73790432 C T CLIP2 Silent p.Y567Y 0.17 TCGA-IB-7651-01 7 73922483 73922483 A G GTF2IRD1 Missense_Mutation p.T25A 0.17 tolerated(0.73) benign(0.001) TCGA-IB-7651-01 7 74016819 74016819 C T GTF2IRD1 3'UTR 0.17 TCGA-IB-7651-01 7 74114664 74114664 C T GTF2I Missense_Mutation p.P154L 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 74114695 74114695 C T GTF2I Silent p.N164N 0.20 TCGA-IB-7651-01 7 74234552 74234552 A G GTF2IRD2 Silent p.G191G 0.17 TCGA-IB-7651-01 7 7483263 7483263 C A COL28A1 Missense_Mutation p.A535S 0.21 tolerated(0.76) benign(0.119) TCGA-IB-7651-01 7 75034181 75034181 G A TRIM73 Silent p.P185P 0.14 TCGA-IB-7651-01 7 75045625 75045625 G A POM121C 3'Flank 0.16 TCGA-IB-7651-01 7 75104011 75104011 A G POM121C 5'UTR 0.22 TCGA-IB-7651-01 7 75140406 75140406 C T Y_RNA 3'Flank 0.19 TCGA-IB-7651-01 7 75182880 75182880 C T HIP1 Missense_Mutation p.E723K 0.18 tolerated(0.11) benign(0.01) TCGA-IB-7651-01 7 75184851 75184851 G T HIP1 Missense_Mutation p.S611Y 0.07 deleterious(0.01) benign(0.212) TCGA-IB-7651-01 7 75187529 75187529 C A HIP1 Missense_Mutation p.S469I 0.17 deleterious(0.02) benign(0.125) TCGA-IB-7651-01 7 75221405 75221405 C A HIP1 Missense_Mutation p.R118I 0.17 deleterious(0.02) benign(0.218) TCGA-IB-7651-01 7 75441154 75441154 C T CCL24 Missense_Mutation p.G107D 0.12 tolerated(0.14) benign(0.045) TCGA-IB-7651-01 7 7545675 7545675 G A COL28A1 Silent p.D332D 0.18 TCGA-IB-7651-01 7 75511175 75511175 C T RHBDD2 Silent p.V69V 0.18 TCGA-IB-7651-01 7 75573203 75573203 T C POR Intron 0.19 TCGA-IB-7651-01 7 75609862 75609862 G A POR Intron 0.20 TCGA-IB-7651-01 7 75609877 75609877 T C POR Intron 0.20 TCGA-IB-7651-01 7 75959524 75959524 C T YWHAG Silent p.S38S 0.19 TCGA-IB-7651-01 7 76024632 76024632 G A SRCRB4D Missense_Mutation p.T295M 0.05 deleterious(0.04) benign(0.069) TCGA-IB-7651-01 7 76112048 76112048 G T DTX2 Missense_Mutation p.K164N 0.09 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 7 76131738 76131738 C A DTX2 Missense_Mutation p.L452M 0.24 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 7 76131750 76131750 G A DTX2 Missense_Mutation p.A456T 0.25 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 7 76610500 76610500 G T UPK3B Intron 0.17 TCGA-IB-7651-01 7 76610511 76610511 G A UPK3B Intron 0.19 TCGA-IB-7651-01 7 7679979 7679979 G A RPA3 Missense_Mutation p.P24L 0.18 deleterious(0.02) probably_damaging(0.996) TCGA-IB-7651-01 7 76943748 76943748 C T GSAP Silent p.L716L 0.18 TCGA-IB-7651-01 7 76950696 76950696 C T GSAP Missense_Mutation p.E650K 0.21 tolerated(0.19) benign(0.392) TCGA-IB-7651-01 7 77166902 77166902 G A PTPN12 Silent p.R13R 0.15 TCGA-IB-7651-01 7 77569467 77569467 G T PHTF2 Missense_Mutation p.A496S 0.17 tolerated(1) benign(0.016) TCGA-IB-7651-01 7 77569659 77569659 G A PHTF2 Intron 0.18 TCGA-IB-7651-01 7 77649134 77649134 T G MAGI2 Missense_Mutation p.K1289T 0.20 tolerated(0.22) benign(0.067) TCGA-IB-7651-01 7 77756523 77756523 T G MAGI2 Missense_Mutation p.R1138S 0.08 deleterious(0.01) benign(0.023) TCGA-IB-7651-01 7 77789563 77789563 C T MAGI2 Missense_Mutation p.S875N 0.19 deleterious(0.01) possibly_damaging(0.882) TCGA-IB-7651-01 7 77885770 77885770 G A MAGI2 Missense_Mutation p.P513S 0.15 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 7 77975329 77975329 G A MAGI2 Missense_Mutation p.P379S 0.18 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 7 78130968 78130968 G A MAGI2 Silent p.D297D 0.18 TCGA-IB-7651-01 7 796502 796502 G A HEATR2 Silent p.T447T 0.18 TCGA-IB-7651-01 7 79842159 79842159 T A GNAI1 Missense_Mutation p.L283H 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 7 801405 801405 C T HEATR2 Missense_Mutation p.R496C 0.24 tolerated(0.07) possibly_damaging(0.586) TCGA-IB-7651-01 7 80374463 80374463 G A SEMA3C Missense_Mutation p.A668V 0.19 tolerated(0.25) benign(0.154) TCGA-IB-7651-01 7 8043574 8043574 G A GLCCI1 Missense_Mutation p.S165N 0.16 tolerated(0.15) benign(0.003) TCGA-IB-7651-01 7 814759 814759 C T HEATR2 Silent p.G733G 0.18 TCGA-IB-7651-01 7 8153658 8153658 G T ICA1 Silent p.A449A 0.21 TCGA-IB-7651-01 7 81579567 81579567 C T CACNA2D1 3'UTR 0.22 TCGA-IB-7651-01 7 81600145 81600145 G T CACNA2D1 Intron 0.20 TCGA-IB-7651-01 7 81603842 81603842 G A CACNA2D1 Missense_Mutation p.S661L 0.17 deleterious(0.03) benign(0.324) TCGA-IB-7651-01 7 81964505 81964505 T C CACNA2D1 Silent p.E80E 0.19 TCGA-IB-7651-01 7 82453599 82453599 G A PCLO Missense_Mutation p.S4850F 0.21 unknown(0) TCGA-IB-7651-01 7 82453619 82453619 G A PCLO Silent p.S4843S 0.22 TCGA-IB-7651-01 7 825229 825229 G A HEATR2 Missense_Mutation p.R836H 0.21 deleterious(0) possibly_damaging(0.858) TCGA-IB-7651-01 7 82544139 82544139 G T PCLO Missense_Mutation p.T4388N 0.19 unknown(0) TCGA-IB-7651-01 7 82545765 82545765 C T PCLO Missense_Mutation p.R3846Q 0.19 unknown(0) TCGA-IB-7651-01 7 82764246 82764246 C A PCLO Missense_Mutation p.G874W 0.18 unknown(0) TCGA-IB-7651-01 7 83675699 83675699 C T SEMA3A Missense_Mutation p.R203Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 7 84628732 84628732 C A SEMA3D 3'UTR 0.20 TCGA-IB-7651-01 7 84628811 84628811 C T SEMA3D Missense_Mutation p.R760Q 0.21 tolerated(0.05) probably_damaging(0.997) TCGA-IB-7651-01 7 84644469 84644469 A G SEMA3D Missense_Mutation p.Y537H 0.20 tolerated(0.08) probably_damaging(0.996) TCGA-IB-7651-01 7 84651710 84651710 T C SEMA3D Missense_Mutation p.T471A 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-IB-7651-01 7 84651735 84651735 G A SEMA3D Silent p.G462G 0.20 TCGA-IB-7651-01 7 84666282 84666282 G T SEMA3D Missense_Mutation p.P372T 0.20 deleterious(0) probably_damaging(0.941) TCGA-IB-7651-01 7 86468560 86468560 C T GRM3 Missense_Mutation p.A577V 0.19 deleterious(0.01) probably_damaging(0.96) TCGA-IB-7651-01 7 86469049 86469049 C T GRM3 Missense_Mutation p.S740F 0.08 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 7 86537040 86537040 A G KIAA1324L Missense_Mutation p.V835A 0.18 deleterious(0) possibly_damaging(0.46) TCGA-IB-7651-01 7 86570678 86570678 C A KIAA1324L Intron 0.16 TCGA-IB-7651-01 7 86794362 86794362 G T DMTF1 Missense_Mutation p.Q35H 0.25 deleterious_low_confidence(0.03) benign(0.004) TCGA-IB-7651-01 7 86817581 86817581 G A DMTF1 Missense_Mutation p.A459T 0.21 tolerated(0.75) benign(0.001) TCGA-IB-7651-01 7 86823161 86823161 G A DMTF1 Missense_Mutation p.V591I 0.18 deleterious_low_confidence(0.03) benign(0.004) TCGA-IB-7651-01 7 87004992 87004992 G T CROT Missense_Mutation p.G262V 0.10 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 7 87011306 87011306 G A CROT Nonsense_Mutation p.W381* 0.20 TCGA-IB-7651-01 7 87056075 87056075 G A ABCB4 Silent p.T685T 0.23 TCGA-IB-7651-01 7 87174266 87174266 C A ABCB1 Missense_Mutation p.S646I 0.18 tolerated(0.09) benign(0.002) TCGA-IB-7651-01 7 87195518 87195518 A C ABCB1 Missense_Mutation p.I190M 0.18 tolerated(0.14) benign(0.216) TCGA-IB-7651-01 7 87780610 87780610 A G ADAM22 Silent p.R552R 0.18 TCGA-IB-7651-01 7 87837800 87837800 T C SRI Intron 0.20 TCGA-IB-7651-01 7 87838718 87838718 G A SRI Silent p.S149S 0.22 TCGA-IB-7651-01 7 8791187 8791187 G A NXPH1 Missense_Mutation p.D202N 0.25 tolerated(0.55) possibly_damaging(0.785) TCGA-IB-7651-01 7 87912325 87912325 A C STEAP4 Nonsense_Mutation p.Y205* 0.17 TCGA-IB-7651-01 7 881707 881707 C T SUN1 Missense_Mutation p.R131W 0.20 tolerated(0.19) possibly_damaging(0.571) TCGA-IB-7651-01 7 88963589 88963589 A G ZNF804B Silent p.A431A 0.19 TCGA-IB-7651-01 7 897557 897557 A C SUN1 Missense_Mutation p.K496T 0.08 deleterious(0.01) benign(0.047) TCGA-IB-7651-01 7 89861714 89861714 C T STEAP2 Nonsense_Mutation p.R417* 0.16 TCGA-IB-7651-01 7 89915597 89915597 A C C7orf63 Missense_Mutation p.I514L 0.09 tolerated(0.13) benign(0.009) TCGA-IB-7651-01 7 90741870 90741870 A G CDK14 Missense_Mutation p.N372D 0.19 tolerated(0.17) benign(0.003) TCGA-IB-7651-01 7 90895309 90895309 G A FZD1 Missense_Mutation p.G372S 0.04 deleterious(0.05) probably_damaging(0.97) TCGA-IB-7651-01 7 90895465 90895465 T C FZD1 Missense_Mutation p.S424P 0.06 deleterious(0) probably_damaging(0.953) TCGA-IB-7651-01 7 90895700 90895700 G A FZD1 Missense_Mutation p.G502D 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 7 90895964 90895964 C T FZD1 Missense_Mutation p.A590V 0.16 tolerated(0.4) benign(0.08) TCGA-IB-7651-01 7 90896026 90896026 C A FZD1 Missense_Mutation p.L611M 0.18 tolerated(0.19) benign(0.443) TCGA-IB-7651-01 7 91631371 91631371 T A AKAP9 Missense_Mutation p.S714T 0.18 probably_damaging(0.997) TCGA-IB-7651-01 7 91631643 91631643 T C AKAP9 Silent p.I804I 0.20 TCGA-IB-7651-01 7 91632019 91632019 A T AKAP9 Missense_Mutation p.M930L 0.18 benign(0) TCGA-IB-7651-01 7 91643633 91643633 T C AKAP9 Silent p.Y1201Y 0.20 TCGA-IB-7651-01 7 91660882 91660882 A G AKAP9 Silent p.K1434K 0.18 TCGA-IB-7651-01 7 91668085 91668085 C A AKAP9 Missense_Mutation p.S1564Y 0.06 possibly_damaging(0.655) TCGA-IB-7651-01 7 91699387 91699387 G A AKAP9 Missense_Mutation p.C2125Y 0.03 probably_damaging(0.999) TCGA-IB-7651-01 7 91709392 91709392 C T AKAP9 Silent p.L2649L 0.23 TCGA-IB-7651-01 7 91714146 91714146 C T AKAP9 Silent p.D2908D 0.17 TCGA-IB-7651-01 7 91735055 91735055 A G AKAP9 Silent p.R3798R 0.10 TCGA-IB-7651-01 7 91863867 91863867 G A KRIT1 Silent p.S295S 0.20 TCGA-IB-7651-01 7 91870376 91870376 T C KRIT1 Missense_Mutation p.T65A 0.23 tolerated(0.48) benign(0.001) TCGA-IB-7651-01 7 92027712 92027712 C T ANKIB1 Missense_Mutation p.R907W 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.667) TCGA-IB-7651-01 7 92027950 92027950 C A ANKIB1 Missense_Mutation p.A986D 0.20 deleterious_low_confidence(0) benign(0.249) TCGA-IB-7651-01 7 92098212 92098212 G T ERVW-1 Missense_Mutation p.T495N 0.20 tolerated_low_confidence(0.16) benign(0.065) TCGA-IB-7651-01 7 92098256 92098256 G A ERVW-1 Silent p.I480I 0.22 TCGA-IB-7651-01 7 92116679 92116679 G T PEX1 3'UTR 0.22 TCGA-IB-7651-01 7 92119135 92119135 A G PEX1 Silent p.L1177L 0.23 TCGA-IB-7651-01 7 92122335 92122335 G A PEX1 Silent p.L1047L 0.23 TCGA-IB-7651-01 7 92135622 92135622 T C PEX1 Missense_Mutation p.K614E 0.22 deleterious(0.02) benign(0.071) TCGA-IB-7651-01 7 92138680 92138680 C T PEX1 Missense_Mutation p.D545N 0.19 deleterious(0.04) benign(0.146) TCGA-IB-7651-01 7 92163909 92163909 C T RBM48 Silent p.S214S 0.12 TCGA-IB-7651-01 7 92164195 92164195 G T RBM48 Nonsense_Mutation p.G310* 0.22 TCGA-IB-7651-01 7 92164347 92164347 T G RBM48 Intron 0.22 TCGA-IB-7651-01 7 92730814 92730814 G A SAMD9 Nonsense_Mutation p.R1533* 0.11 TCGA-IB-7651-01 7 92732478 92732478 T C SAMD9 Missense_Mutation p.Y978C 0.22 deleterious(0.04) possibly_damaging(0.811) TCGA-IB-7651-01 7 92734599 92734599 T C SAMD9 Missense_Mutation p.Y271C 0.09 deleterious(0) possibly_damaging(0.894) TCGA-IB-7651-01 7 92734864 92734864 G A SAMD9 Missense_Mutation p.P183S 0.24 deleterious(0.03) probably_damaging(0.932) TCGA-IB-7651-01 7 92734899 92734899 T A SAMD9 Missense_Mutation p.N171I 0.09 deleterious(0.01) benign(0.126) TCGA-IB-7651-01 7 92735170 92735170 C T SAMD9 Missense_Mutation p.D81N 0.20 tolerated(0.33) benign(0.002) TCGA-IB-7651-01 7 92760879 92760879 G A SAMD9L Missense_Mutation p.S1469F 0.21 deleterious(0.04) benign(0.072) TCGA-IB-7651-01 7 92761865 92761865 G T SAMD9L Missense_Mutation p.N1140K 0.21 tolerated(1) benign(0.002) TCGA-IB-7651-01 7 92762815 92762815 C A SAMD9L Nonsense_Mutation p.E824* 0.22 TCGA-IB-7651-01 7 92762927 92762927 G T SAMD9L Silent p.T786T 0.17 TCGA-IB-7651-01 7 92763168 92763168 G T SAMD9L Missense_Mutation p.S706Y 0.24 deleterious(0) benign(0.341) TCGA-IB-7651-01 7 92838007 92838007 C A HEPACAM2 Nonsense_Mutation p.E300* 0.20 TCGA-IB-7651-01 7 92963455 92963455 T C CCDC132 Silent p.S668S 0.21 TCGA-IB-7651-01 7 92983071 92983071 A C CCDC132 Missense_Mutation p.E861D 0.18 tolerated(0.07) benign(0.34) TCGA-IB-7651-01 7 93106930 93106930 G A CALCR Missense_Mutation p.P104S 0.19 tolerated(0.07) probably_damaging(0.999) TCGA-IB-7651-01 7 935124 935124 C T GET4 3'UTR 0.16 TCGA-IB-7651-01 7 93539966 93539966 A G GNGT1 Intron 0.18 TCGA-IB-7651-01 7 93623451 93623451 G T BET1 3'UTR 0.26 TCGA-IB-7651-01 7 94038695 94038695 T C COL1A2 Missense_Mutation p.V285A 0.20 unknown(0) TCGA-IB-7651-01 7 94052429 94052429 C T COL1A2 Missense_Mutation p.A855V 0.20 unknown(0) TCGA-IB-7651-01 7 94054952 94054952 C T COL1A2 Missense_Mutation p.R938C 0.15 unknown(0) TCGA-IB-7651-01 7 94055816 94055816 G T COL1A2 Nonsense_Mutation p.G1027* 0.16 TCGA-IB-7651-01 7 94059837 94059837 C T COL1A2 3'UTR 0.19 TCGA-IB-7651-01 7 94180661 94180661 C T CASD1 Silent p.H609H 0.09 TCGA-IB-7651-01 7 94184895 94184895 T C CASD1 Missense_Mutation p.V740A 0.18 deleterious(0) possibly_damaging(0.67) TCGA-IB-7651-01 7 94228093 94228093 G A SGCE Missense_Mutation p.T416M 0.20 deleterious(0.02) possibly_damaging(0.832) TCGA-IB-7651-01 7 94257604 94257604 C T SGCE Nonsense_Mutation p.W100* 0.21 TCGA-IB-7651-01 7 94293496 94293496 C T PEG10 Missense_Mutation p.L210F 0.17 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 7 94879459 94879459 C A PPP1R9A Missense_Mutation p.T763K 0.17 deleterious(0.03) probably_damaging(0.987) TCGA-IB-7651-01 7 94903217 94903217 C A PPP1R9A Missense_Mutation p.A1044D 0.10 tolerated(0.24) possibly_damaging(0.628) TCGA-IB-7651-01 7 94940825 94940825 T G PON1 Missense_Mutation p.K145N 0.20 deleterious(0) possibly_damaging(0.668) TCGA-IB-7651-01 7 95034793 95034793 C T PON2 Missense_Mutation p.R305H 0.17 deleterious(0.02) possibly_damaging(0.553) TCGA-IB-7651-01 7 95157465 95157465 C T ASB4 Silent p.A276A 0.20 TCGA-IB-7651-01 7 95214795 95214795 G A PDK4 3'UTR 0.28 TCGA-IB-7651-01 7 95657489 95657489 C A DYNC1I1 Silent p.S341S 0.19 TCGA-IB-7651-01 7 96324145 96324145 A G SHFM1 Silent p.D45D 0.21 TCGA-IB-7651-01 7 96639182 96639182 C T DLX6 Silent p.S235S 0.24 TCGA-IB-7651-01 7 96639212 96639212 G A DLX6 Silent p.S245S 0.21 TCGA-IB-7651-01 7 97486013 97486013 C T ASNS Missense_Mutation p.R340H 0.20 deleterious(0.02) benign(0.103) TCGA-IB-7651-01 7 97498296 97498296 C T ASNS Missense_Mutation p.G58E 0.24 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 7 97498323 97498323 C T ASNS Missense_Mutation p.R49Q 0.21 deleterious(0.04) possibly_damaging(0.737) TCGA-IB-7651-01 7 97821008 97821008 C T LMTK2 Missense_Mutation p.R411W 0.15 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 7 97821797 97821797 G T LMTK2 Missense_Mutation p.D674Y 0.21 deleterious(0) possibly_damaging(0.873) TCGA-IB-7651-01 7 97822802 97822802 C A LMTK2 Missense_Mutation p.L1009I 0.21 tolerated(0.12) possibly_damaging(0.637) TCGA-IB-7651-01 7 97823515 97823515 C T LMTK2 Silent p.S1246S 0.19 TCGA-IB-7651-01 7 97823692 97823692 C T LMTK2 Silent p.S1305S 0.10 TCGA-IB-7651-01 7 97842100 97842100 C A BHLHA15 Missense_Mutation p.A160D 0.19 tolerated_low_confidence(0.16) possibly_damaging(0.502) TCGA-IB-7651-01 7 97858364 97858364 G A TECPR1 Silent p.G799G 0.12 TCGA-IB-7651-01 7 97933523 97933523 G A BAIAP2L1 Silent p.P469P 0.16 TCGA-IB-7651-01 7 98497112 98497112 T C TRRAP Missense_Mutation p.L234S 0.18 possibly_damaging(0.587) TCGA-IB-7651-01 7 98522833 98522833 G A TRRAP Missense_Mutation p.M974I 0.20 benign(0.122) TCGA-IB-7651-01 7 98535413 98535413 C T TRRAP Silent p.S1458S 0.20 TCGA-IB-7651-01 7 98535441 98535441 A G TRRAP Missense_Mutation p.M1468V 0.20 benign(0.085) TCGA-IB-7651-01 7 98550854 98550854 C A TRRAP Missense_Mutation p.A1836D 0.20 benign(0.197) TCGA-IB-7651-01 7 98552885 98552885 G A TRRAP Silent p.P1958P 0.12 TCGA-IB-7651-01 7 98562313 98562313 C T TRRAP Silent p.I2290I 0.22 TCGA-IB-7651-01 7 98565232 98565232 C T TRRAP Missense_Mutation p.R2468C 0.07 probably_damaging(0.99) TCGA-IB-7651-01 7 98588118 98588118 T C TRRAP Missense_Mutation p.L3215S 0.20 probably_damaging(0.99) TCGA-IB-7651-01 7 98592299 98592299 C T TRRAP Silent p.P3365P 0.19 TCGA-IB-7651-01 7 98592415 98592415 C T TRRAP Missense_Mutation p.A3404V 0.15 possibly_damaging(0.691) TCGA-IB-7651-01 7 99047943 99047943 G A CPSF4 Missense_Mutation p.E118K 0.17 tolerated(0.13) benign(0.136) TCGA-IB-7651-01 7 99051675 99051675 G A CPSF4 Silent p.P219P 0.22 TCGA-IB-7651-01 7 99097579 99097579 G A ZNF394 Silent p.P46P 0.18 TCGA-IB-7651-01 7 99103950 99103950 C T ZKSCAN5 Silent p.L95L 0.18 TCGA-IB-7651-01 7 99123455 99123455 T C ZKSCAN5 Silent p.N264N 0.21 TCGA-IB-7651-01 7 99146025 99146025 A G FAM200A Silent p.T2T 0.21 TCGA-IB-7651-01 7 99170087 99170087 G A ZNF655 Missense_Mutation p.S154N 0.16 tolerated(0.43) benign(0.383) TCGA-IB-7651-01 7 99226926 99226926 C T ZSCAN25 Silent p.L306L 0.18 TCGA-IB-7651-01 7 99227162 99227162 C A ZSCAN25 Missense_Mutation p.T385N 0.18 tolerated(0.09) benign(0.062) TCGA-IB-7651-01 7 99227256 99227256 C A ZSCAN25 Missense_Mutation p.H416Q 0.21 tolerated(0.07) possibly_damaging(0.777) TCGA-IB-7651-01 7 99227349 99227349 G T ZSCAN25 Missense_Mutation p.Q447H 0.23 deleterious(0.04) possibly_damaging(0.69) TCGA-IB-7651-01 7 99306847 99306847 T C CYP3A7 Missense_Mutation p.Y355C 0.10 deleterious(0.01) probably_damaging(0.946) TCGA-IB-7651-01 7 99313450 99313450 C A CYP3A7 Missense_Mutation p.D201Y 0.22 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 7 99454485 99454485 C T CYP3A43 Silent p.I276I 0.19 TCGA-IB-7651-01 7 99474422 99474422 G T OR2AE1 Missense_Mutation p.L79M 0.19 deleterious(0) benign(0.008) TCGA-IB-7651-01 7 99489912 99489912 G T TRIM4 Missense_Mutation p.F459L 0.19 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 7 99564826 99564826 C A AZGP1 Missense_Mutation p.G233W 0.13 deleterious(0.02) probably_damaging(0.928) TCGA-IB-7651-01 7 99654598 99654598 C A ZSCAN21 5'UTR 0.19 TCGA-IB-7651-01 7 99654990 99654990 G A ZSCAN21 Missense_Mutation p.E121K 0.23 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 7 99669413 99669413 C T ZNF3 Missense_Mutation p.E232K 0.19 deleterious(0.01) possibly_damaging(0.661) TCGA-IB-7651-01 7 99669525 99669525 G A ZNF3 Silent p.P194P 0.21 TCGA-IB-7651-01 7 99669691 99669691 G A ZNF3 Missense_Mutation p.P139L 0.17 tolerated(0.48) benign(0.011) TCGA-IB-7651-01 7 99688878 99688878 G T COPS6 Missense_Mutation p.A223S 0.16 tolerated(0.1) possibly_damaging(0.678) TCGA-IB-7651-01 7 99691794 99691794 A T MCM7 Splice_Site p.X616_splice 0.16 TCGA-IB-7651-01 7 99753526 99753526 T C C7orf43 Intron 0.30 TCGA-IB-7651-01 7 99754149 99754149 C T C7orf43 Missense_Mutation p.R367H 0.22 deleterious(0.02) benign(0.279) TCGA-IB-7651-01 7 99758090 99758090 C T GAL3ST4 Missense_Mutation p.D308N 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-IB-7651-01 7 99786553 99786553 G A STAG3 Missense_Mutation p.G210D 0.22 tolerated(0.59) benign(0.092) TCGA-IB-7651-01 7 99799248 99799248 G A GATS 3'UTR 0.11 TCGA-IB-7651-01 7 99811415 99811415 G A STAG3 Missense_Mutation p.E1219K 0.05 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-IB-7651-01 7 99909548 99909548 G A SPDYE3 Silent p.S240S 0.22 TCGA-IB-7651-01 7 99951055 99951055 C T PILRB 5'UTR 0.21 TCGA-IB-7651-01 7 99957138 99957138 C T PILRB Silent p.L211L 0.19 TCGA-IB-7651-01 7 99971341 99971341 C A PILRA Missense_Mutation p.P21H 0.17 deleterious(0) benign(0.002) TCGA-IB-7651-01 8 100026013 100026013 A C VPS13B 5'UTR 0.21 TCGA-IB-7651-01 8 100147882 100147882 C T VPS13B Missense_Mutation p.T495I 0.19 deleterious(0) possibly_damaging(0.86) TCGA-IB-7651-01 8 100286495 100286495 G A VPS13B Missense_Mutation p.S862N 0.17 tolerated(0.08) possibly_damaging(0.483) TCGA-IB-7651-01 8 100523350 100523350 G A VPS13B Missense_Mutation p.D1440N 0.16 deleterious(0.01) possibly_damaging(0.903) TCGA-IB-7651-01 8 100587894 100587894 G A VPS13B Missense_Mutation p.R1678Q 0.17 tolerated(0.16) possibly_damaging(0.885) TCGA-IB-7651-01 8 100789061 100789061 C A VPS13B Missense_Mutation p.L2461M 0.10 deleterious(0) possibly_damaging(0.86) TCGA-IB-7651-01 8 100888033 100888033 C T VPS13B 3'UTR 0.15 TCGA-IB-7651-01 8 10102688 10102688 G A MSRA Missense_Mutation p.A96T 0.15 deleterious(0.03) possibly_damaging(0.794) TCGA-IB-7651-01 8 101190150 101190150 G A SPAG1 Missense_Mutation p.S136N 0.08 tolerated(0.25) benign(0.063) TCGA-IB-7651-01 8 101196260 101196260 T C SPAG1 Missense_Mutation p.S189P 0.21 tolerated(0.57) benign(0.005) TCGA-IB-7651-01 8 101271380 101271380 C T RNF19A Missense_Mutation p.A641T 0.19 tolerated_low_confidence(0.19) benign(0.034) TCGA-IB-7651-01 8 101541971 101541971 G A ANKRD46 Missense_Mutation p.L31F 0.15 deleterious(0.02) possibly_damaging(0.849) TCGA-IB-7651-01 8 101608911 101608911 C T SNX31 Missense_Mutation p.V312I 0.10 tolerated(0.26) benign(0) TCGA-IB-7651-01 8 101624274 101624274 G T SNX31 Missense_Mutation p.L189I 0.15 tolerated(0.16) benign(0.391) TCGA-IB-7651-01 8 102585977 102585977 A C GRHL2 Missense_Mutation p.K272N 0.18 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 8 102589658 102589658 G A GRHL2 Missense_Mutation p.S305N 0.17 deleterious(0.03) probably_damaging(0.911) TCGA-IB-7651-01 8 102611284 102611284 G A GRHL2 Splice_Site p.X335_splice 0.08 TCGA-IB-7651-01 8 102731833 102731833 G A NCALD Missense_Mutation p.R9C 0.17 deleterious(0.02) benign(0.004) TCGA-IB-7651-01 8 103231160 103231160 G A RRM2B Missense_Mutation p.A189V 0.17 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-IB-7651-01 8 103266610 103266610 C T UBR5 Missense_Mutation p.V2774I 0.21 tolerated(1) possibly_damaging(0.838) TCGA-IB-7651-01 8 103274267 103274267 G T UBR5 Missense_Mutation p.P2573H 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-IB-7651-01 8 103338880 103338880 G A UBR5 Missense_Mutation p.P498L 0.13 deleterious(0) probably_damaging(0.966) TCGA-IB-7651-01 8 103357683 103357683 C A UBR5 Missense_Mutation p.S276I 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-IB-7651-01 8 103564019 103564019 C A ODF1 Missense_Mutation p.L22I 0.19 tolerated_low_confidence(0.45) possibly_damaging(0.899) TCGA-IB-7651-01 8 103564276 103564276 G T ODF1 Splice_Site p.X107_splice 0.20 TCGA-IB-7651-01 8 103663511 103663511 A C KLF10 Missense_Mutation p.F350C 0.19 deleterious(0.04) possibly_damaging(0.76) TCGA-IB-7651-01 8 103667818 103667818 G A KLF10 Silent p.F4F 0.14 TCGA-IB-7651-01 8 10383150 10383150 G A PRSS55 Missense_Mutation p.G19S 0.19 tolerated(0.05) benign(0.001) TCGA-IB-7651-01 8 103845355 103845355 G A AZIN1 Missense_Mutation p.S278F 0.16 deleterious(0.03) benign(0.259) TCGA-IB-7651-01 8 104225273 104225273 G A BAALC Missense_Mutation p.G96D 0.19 deleterious(0.04) probably_damaging(1) TCGA-IB-7651-01 8 104343656 104343657 - A FZD6 Frame_Shift_Ins p.G682Rfs*50 0.21 TCGA-IB-7651-01 8 104387965 104387965 G A CTHRC1 Splice_Site p.X51_splice 0.16 TCGA-IB-7651-01 8 104395024 104395024 T - CTHRC1 3'UTR 0.22 TCGA-IB-7651-01 8 104432575 104432575 C T DCAF13 Nonsense_Mutation p.R204* 0.06 TCGA-IB-7651-01 8 104453770 104453770 C T DCAF13 Missense_Mutation p.R544C 0.19 deleterious(0) benign(0.199) TCGA-IB-7651-01 8 10464701 10464701 C A RP1L1 Missense_Mutation p.A2303S 0.18 unknown(0) TCGA-IB-7651-01 8 10465626 10465626 C A RP1L1 Missense_Mutation p.Q1994H 0.18 unknown(0) TCGA-IB-7651-01 8 104831702 104831702 A T RIMS2 Intron 0.19 TCGA-IB-7651-01 8 104897708 104897708 G A RIMS2 Missense_Mutation p.R294K 0.11 tolerated_low_confidence(0.1) possibly_damaging(0.792) TCGA-IB-7651-01 8 104922756 104922756 A C RIMS2 Intron 0.09 TCGA-IB-7651-01 8 105361526 105361526 G A DCSTAMP Missense_Mutation p.R249K 0.19 tolerated(0.99) benign(0.009) TCGA-IB-7651-01 8 105367128 105367128 C T DCSTAMP Silent p.I351I 0.19 TCGA-IB-7651-01 8 105456654 105456654 C A DPYS Missense_Mutation p.K205N 0.07 deleterious(0.01) benign(0.022) TCGA-IB-7651-01 8 105459595 105459595 G A DPYS Missense_Mutation p.A187V 0.19 deleterious(0) possibly_damaging(0.89) TCGA-IB-7651-01 8 105463555 105463555 G A DPYS Silent p.F114F 0.17 TCGA-IB-7651-01 8 105509583 105509583 C T LRP12 Nonsense_Mutation p.W399* 0.20 TCGA-IB-7651-01 8 105510183 105510183 G T LRP12 Silent p.I199I 0.16 TCGA-IB-7651-01 8 10557846 10557846 G T C8orf74 Silent p.L250L 0.15 TCGA-IB-7651-01 8 10583423 10583423 T C SOX7 Missense_Mutation p.E383G 0.18 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 8 106808031 106808031 C T ZFPM2 Intron 0.14 TCGA-IB-7651-01 8 106814456 106814456 C T ZFPM2 Missense_Mutation p.P716S 0.21 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 8 10755376 10755376 G A XKR6 3'UTR 0.17 TCGA-IB-7651-01 8 10755726 10755726 G A XKR6 Silent p.L554L 0.17 TCGA-IB-7651-01 8 10756176 10756176 G A XKR6 Silent p.G404G 0.22 TCGA-IB-7651-01 8 107781789 107781789 C A ABRA Missense_Mutation p.Q210H 0.18 tolerated(0.05) benign(0.011) TCGA-IB-7651-01 8 109796947 109796947 C T TMEM74 Silent p.S127S 0.18 TCGA-IB-7651-01 8 110100072 110100072 G T TRHR Missense_Mutation p.A111S 0.08 deleterious(0.04) possibly_damaging(0.714) TCGA-IB-7651-01 8 110283254 110283254 T C NUDCD1 Missense_Mutation p.T427A 0.22 deleterious(0.02) benign(0.05) TCGA-IB-7651-01 8 110408262 110408262 C T PKHD1L1 Missense_Mutation p.T273I 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 8 110442244 110442244 C A PKHD1L1 Silent p.V1069V 0.16 TCGA-IB-7651-01 8 110457518 110457518 T C PKHD1L1 Missense_Mutation p.V1807A 0.21 tolerated(1) benign(0.001) TCGA-IB-7651-01 8 110471888 110471888 A G PKHD1L1 Missense_Mutation p.T2357A 0.26 deleterious(0.01) benign(0.184) TCGA-IB-7651-01 8 110478873 110478873 C A PKHD1L1 Missense_Mutation p.A2827D 0.12 tolerated(0.09) benign(0.001) TCGA-IB-7651-01 8 110503218 110503218 A G PKHD1L1 Silent p.S3334S 0.21 TCGA-IB-7651-01 8 110505909 110505909 C T PKHD1L1 Missense_Mutation p.T3419I 0.18 tolerated(0.63) benign(0.166) TCGA-IB-7651-01 8 110509151 110509151 A C PKHD1L1 Missense_Mutation p.Q3444P 0.15 tolerated(0.21) benign(0.009) TCGA-IB-7651-01 8 110509385 110509385 G T PKHD1L1 Nonsense_Mutation p.E3495* 0.13 TCGA-IB-7651-01 8 110569174 110569174 A T EBAG9 Missense_Mutation p.K111M 0.10 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 8 11157552 11157552 C A MTMR9 Silent p.S104S 0.04 TCGA-IB-7651-01 8 11180276 11180276 C T MTMR9 Silent p.D543D 0.16 TCGA-IB-7651-01 8 11281761 11281761 C T FAM167A 3'UTR 0.13 TCGA-IB-7651-01 8 113237091 113237091 T G CSMD3 Missense_Mutation p.E3678A 0.17 deleterious(0) benign(0.387) TCGA-IB-7651-01 8 113246693 113246693 G A CSMD3 Silent p.S3547S 0.19 TCGA-IB-7651-01 8 113317044 113317044 G T CSMD3 Missense_Mutation p.S2724R 0.15 tolerated(0.28) benign(0.219) TCGA-IB-7651-01 8 113347602 113347602 T C CSMD3 Missense_Mutation p.H2374R 0.19 tolerated(0.07) probably_damaging(0.988) TCGA-IB-7651-01 8 113348918 113348918 G T CSMD3 Missense_Mutation p.L2328I 0.17 tolerated(0.08) benign(0.123) TCGA-IB-7651-01 8 113418858 113418858 A C CSMD3 Missense_Mutation p.F1902V 0.19 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 8 113504912 113504912 G A CSMD3 Missense_Mutation p.A1695V 0.17 tolerated(0.09) probably_damaging(0.947) TCGA-IB-7651-01 8 113519014 113519014 A C CSMD3 Missense_Mutation p.S1601A 0.14 deleterious(0.01) probably_damaging(0.936) TCGA-IB-7651-01 8 113697892 113697892 C T CSMD3 Missense_Mutation p.G742E 0.18 deleterious(0.04) probably_damaging(1) TCGA-IB-7651-01 8 114186024 114186024 G A CSMD3 Silent p.G212G 0.20 TCGA-IB-7651-01 8 114290828 114290828 A G CSMD3 Silent p.Y169Y 0.08 TCGA-IB-7651-01 8 11606439 11606439 G A GATA4 Missense_Mutation p.D210N 0.18 deleterious(0) benign(0.043) TCGA-IB-7651-01 8 11660380 11660380 C A FDFT1 Missense_Mutation p.F13L 0.25 tolerated(0.94) benign(0.002) TCGA-IB-7651-01 8 116616583 116616583 C T TRPS1 Missense_Mutation p.C538Y 0.17 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-IB-7651-01 8 116617112 116617112 C T TRPS1 Missense_Mutation p.E362K 0.17 deleterious_low_confidence(0) possibly_damaging(0.729) TCGA-IB-7651-01 8 11667339 11667339 G A FDFT1 Missense_Mutation p.V121M 0.18 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 8 11687884 11687884 G A FDFT1 Silent p.S278S 0.19 TCGA-IB-7651-01 8 11702613 11702613 G A CTSB 3'UTR 0.22 TCGA-IB-7651-01 8 11706619 11706619 G A CTSB Missense_Mutation p.H128Y 0.18 deleterious(0.01) benign(0) TCGA-IB-7651-01 8 117668207 117668207 C T EIF3H Missense_Mutation p.E199K 0.09 deleterious(0.02) probably_damaging(0.931) TCGA-IB-7651-01 8 117862951 117862951 G A RAD21 Missense_Mutation p.P509L 0.16 tolerated(0.07) benign(0.041) TCGA-IB-7651-01 8 117864872 117864872 A G RAD21 Silent p.L413L 0.15 TCGA-IB-7651-01 8 117864941 117864941 T C RAD21 Missense_Mutation p.T390A 0.24 tolerated(0.19) benign(0.02) TCGA-IB-7651-01 8 117878848 117878848 C T RAD21 Missense_Mutation p.V41M 0.13 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 8 118175760 118175760 C T SLC30A8 Missense_Mutation p.L274F 0.20 deleterious(0.02) possibly_damaging(0.558) TCGA-IB-7651-01 8 118812091 118812091 G A EXT1 Nonsense_Mutation p.R701* 0.18 TCGA-IB-7651-01 8 119122680 119122680 G A EXT1 Silent p.D202D 0.17 TCGA-IB-7651-01 8 119122901 119122901 C T EXT1 Missense_Mutation p.E129K 0.21 deleterious(0.03) possibly_damaging(0.752) TCGA-IB-7651-01 8 119936933 119936933 G A TNFRSF11B Missense_Mutation p.R296C 0.23 tolerated(0.06) benign(0.01) TCGA-IB-7651-01 8 11994753 11994753 G A USP17L2 Missense_Mutation p.A506V 0.13 tolerated(0.05) benign(0.016) TCGA-IB-7651-01 8 11995139 11995139 T A USP17L2 Missense_Mutation p.E377D 0.11 tolerated(0.43) benign(0.008) TCGA-IB-7651-01 8 11995503 11995503 A G USP17L2 Missense_Mutation p.L256P 0.09 tolerated(0.12) benign(0.356) TCGA-IB-7651-01 8 11995994 11995994 G A USP17L2 Silent p.N92N 0.05 TCGA-IB-7651-01 8 120233931 120233931 G A MAL2 Silent p.S79S 0.15 TCGA-IB-7651-01 8 120430340 120430340 G A NOV Missense_Mutation p.R118H 0.10 tolerated(0.23) benign(0.052) TCGA-IB-7651-01 8 120430352 120430352 A C NOV Missense_Mutation p.K122T 0.11 tolerated(0.83) benign(0.002) TCGA-IB-7651-01 8 120435115 120435115 G A NOV Missense_Mutation p.A273T 0.16 tolerated(0.16) probably_damaging(0.938) TCGA-IB-7651-01 8 120435433 120435433 A C NOV 3'UTR 0.21 TCGA-IB-7651-01 8 120569929 120569929 G T ENPP2 Missense_Mutation p.S860R 0.16 tolerated(0.2) possibly_damaging(0.667) TCGA-IB-7651-01 8 120575129 120575129 G A ENPP2 Missense_Mutation p.P849S 0.16 deleterious(0) probably_damaging(0.985) TCGA-IB-7651-01 8 120581568 120581568 G A ENPP2 Missense_Mutation p.R706W 0.16 deleterious(0) probably_damaging(0.969) TCGA-IB-7651-01 8 120795700 120795700 C T TAF2 Missense_Mutation p.R678Q 0.19 deleterious(0.04) probably_damaging(0.98) TCGA-IB-7651-01 8 120803660 120803660 A G TAF2 Silent p.H439H 0.19 TCGA-IB-7651-01 8 120855907 120855907 A G DSCC1 Missense_Mutation p.S220P 0.16 tolerated(0.28) benign(0.05) TCGA-IB-7651-01 8 120855987 120855987 C A DSCC1 Missense_Mutation p.G193V 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 8 121262977 121262977 C T COL14A1 Silent p.S908S 0.18 TCGA-IB-7651-01 8 121426282 121426282 G A MRPL13 Silent p.L155L 0.19 TCGA-IB-7651-01 8 121706136 121706136 C T SNTB1 Missense_Mutation p.R195Q 0.18 tolerated(0.07) possibly_damaging(0.475) TCGA-IB-7651-01 8 122626577 122626577 T C HAS2 Silent p.G477G 0.10 TCGA-IB-7651-01 8 122641042 122641042 C A HAS2 Missense_Mutation p.S180I 0.19 tolerated(0.24) benign(0.017) TCGA-IB-7651-01 8 12287880 12287880 C A FAM86B2 Missense_Mutation p.Q107H 0.07 tolerated(0.43) possibly_damaging(0.467) TCGA-IB-7651-01 8 123963673 123963673 A G ZHX2 5'UTR 0.31 TCGA-IB-7651-01 8 123963770 123963770 C T ZHX2 Missense_Mutation p.S7F 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 8 123965081 123965081 G A ZHX2 Missense_Mutation p.R444H 0.17 deleterious(0.03) probably_damaging(1) TCGA-IB-7651-01 8 123965964 123965964 C T ZHX2 Silent p.C738C 0.18 TCGA-IB-7651-01 8 124027674 124027674 C T DERL1 3'UTR 0.13 TCGA-IB-7651-01 8 124054334 124054334 C T DERL1 Missense_Mutation p.S10N 0.20 tolerated(0.24) benign(0.008) TCGA-IB-7651-01 8 124138748 124138748 C A TBC1D31 Missense_Mutation p.L569I 0.07 tolerated(0.37) benign(0.1) TCGA-IB-7651-01 8 124219674 124219674 G A FAM83A Missense_Mutation p.A351T 0.18 tolerated(0.65) benign(0.001) TCGA-IB-7651-01 8 124243660 124243660 C T C8orf76 Missense_Mutation p.S232N 0.18 tolerated(0.09) possibly_damaging(0.678) TCGA-IB-7651-01 8 124413008 124413008 C T ATAD2 5'Flank 0.18 TCGA-IB-7651-01 8 124665022 124665022 G A KLHL38 Missense_Mutation p.R49C 0.16 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 8 124787488 124787488 G A FAM91A1 Missense_Mutation p.V87M 0.14 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 8 124792281 124792281 A C FAM91A1 Missense_Mutation p.Q202H 0.20 deleterious(0.01) probably_damaging(0.951) TCGA-IB-7651-01 8 124992756 124992756 G A FER1L6 Missense_Mutation p.R372K 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-IB-7651-01 8 125047562 125047562 C T FER1L6 Silent p.V777V 0.06 TCGA-IB-7651-01 8 125131850 125131850 G A FER1L6 Missense_Mutation p.R1798H 0.10 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 8 125555516 125555516 A G NDUFB9 Missense_Mutation p.Y97C 0.05 deleterious(0.01) possibly_damaging(0.88) TCGA-IB-7651-01 8 125559321 125559321 G A NDUFB9 Nonsense_Mutation p.W125* 0.18 TCGA-IB-7651-01 8 125580657 125580657 C T MTSS1 Missense_Mutation p.R194Q 0.14 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 8 126030321 126030321 G A SQLE Missense_Mutation p.A409T 0.10 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 8 126051140 126051140 C A KIAA0196 Missense_Mutation p.D1006Y 0.04 deleterious(0) probably_damaging(0.926) TCGA-IB-7651-01 8 126093973 126093973 G A KIAA0196 Silent p.L150L 0.14 TCGA-IB-7651-01 8 12946138 12946138 G A DLC1 Missense_Mutation p.R1384C 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 8 12957094 12957094 G A DLC1 Missense_Mutation p.R918W 0.08 deleterious(0) probably_damaging(0.978) TCGA-IB-7651-01 8 12957822 12957822 T C DLC1 Missense_Mutation p.K675R 0.19 tolerated(1) benign(0.012) TCGA-IB-7651-01 8 12957919 12957919 G A DLC1 Missense_Mutation p.P643S 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-IB-7651-01 8 12968258 12968258 G A DLC1 Silent p.L499L 0.20 TCGA-IB-7651-01 8 131146542 131146542 G A ASAP1 Missense_Mutation p.A406V 0.21 tolerated(0.46) benign(0.154) TCGA-IB-7651-01 8 131795943 131795943 G A ADCY8 Missense_Mutation p.R1088W 0.16 deleterious(0) benign(0) TCGA-IB-7651-01 8 131859759 131859759 G A ADCY8 Silent p.L805L 0.20 TCGA-IB-7651-01 8 132952824 132952824 T C EFR3A Splice_Site p.X29_splice 0.14 TCGA-IB-7651-01 8 132980547 132980547 G T EFR3A Missense_Mutation p.Q287H 0.16 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 8 132982776 132982776 G A EFR3A Missense_Mutation p.V349I 0.17 tolerated(0.47) benign(0.184) TCGA-IB-7651-01 8 132996489 132996489 T C EFR3A Missense_Mutation p.I560T 0.17 deleterious(0) benign(0.381) TCGA-IB-7651-01 8 133053837 133053837 G A OC90 Silent p.D93D 0.19 TCGA-IB-7651-01 8 133187774 133187774 G A KCNQ3 Missense_Mutation p.P287S 0.14 tolerated(0.16) benign(0.338) TCGA-IB-7651-01 8 133627315 133627315 T G LRRC6 Missense_Mutation p.K315Q 0.20 tolerated(0.13) benign(0.017) TCGA-IB-7651-01 8 133645086 133645086 C T LRRC6 Missense_Mutation p.E185K 0.17 tolerated(0.13) benign(0.006) TCGA-IB-7651-01 8 133816275 133816275 T G PHF20L1 Missense_Mutation p.F240C 0.18 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 8 133827072 133827072 T G PHF20L1 Nonsense_Mutation p.L374* 0.17 TCGA-IB-7651-01 8 133837585 133837586 - A PHF20L1 Frame_Shift_Ins p.K575Efs*5 0.11 TCGA-IB-7651-01 8 133919108 133919108 C A TG Silent p.R1270R 0.17 TCGA-IB-7651-01 8 133980078 133980078 T C TG Missense_Mutation p.I1909T 0.20 deleterious(0) benign(0.221) TCGA-IB-7651-01 8 134025901 134025901 G A TG Missense_Mutation p.V2152M 0.20 deleterious(0.03) benign(0.11) TCGA-IB-7651-01 8 134060123 134060123 C T SLA Missense_Mutation p.D142N 0.12 tolerated(0.3) benign(0.046) TCGA-IB-7651-01 8 134144149 134144149 G A TG Silent p.S2652S 0.17 TCGA-IB-7651-01 8 134240066 134240066 G A WISP1 3'UTR 0.16 TCGA-IB-7651-01 8 134251278 134251278 C T NDRG1 Missense_Mutation p.R343H 0.12 tolerated(0.11) possibly_damaging(0.629) TCGA-IB-7651-01 8 134477178 134477178 C A ST3GAL1 Missense_Mutation p.G176W 0.17 probably_damaging(1) TCGA-IB-7651-01 8 134478233 134478233 G A ST3GAL1 Missense_Mutation p.S136L 0.18 benign(0.002) TCGA-IB-7651-01 8 135614146 135614146 C T ZFAT Missense_Mutation p.A606T 0.21 tolerated(0.57) benign(0.026) TCGA-IB-7651-01 8 135614438 135614438 C A ZFAT Missense_Mutation p.Q508H 0.09 tolerated(0.07) probably_damaging(0.986) TCGA-IB-7651-01 8 135615146 135615146 A C ZFAT Silent p.T272T 0.20 TCGA-IB-7651-01 8 139635983 139635984 - A COL22A1 Frame_Shift_Ins p.G1255Wfs*56 0.18 TCGA-IB-7651-01 8 139763703 139763703 G A COL22A1 Nonsense_Mutation p.R695* 0.16 TCGA-IB-7651-01 8 139890402 139890402 G A COL22A1 Silent p.S83S 0.18 TCGA-IB-7651-01 8 140714984 140714984 G T KCNK9 Missense_Mutation p.F84L 0.13 tolerated(0.06) benign(0.084) TCGA-IB-7651-01 8 141381095 141381095 C A TRAPPC9 Missense_Mutation p.S538I 0.18 deleterious(0.04) probably_damaging(0.934) TCGA-IB-7651-01 8 141461131 141461131 C T TRAPPC9 Silent p.R212R 0.19 TCGA-IB-7651-01 8 141524478 141524478 T G CHRAC1 Missense_Mutation p.V53G 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 8 141525395 141525395 C A CHRAC1 3'UTR 0.15 TCGA-IB-7651-01 8 141774407 141774407 G T PTK2 Intron 0.05 TCGA-IB-7651-01 8 141799596 141799596 C T PTK2 Missense_Mutation p.R385Q 0.18 tolerated(0.37) benign(0.047) TCGA-IB-7651-01 8 141799614 141799614 C T PTK2 Missense_Mutation p.S379N 0.18 tolerated(0.61) benign(0.001) TCGA-IB-7651-01 8 142146825 142146825 A C DENND3 Missense_Mutation p.E27A 0.21 tolerated(0.46) benign(0.071) TCGA-IB-7651-01 8 142146842 142146842 G A DENND3 Missense_Mutation p.V33I 0.26 tolerated(0.45) benign(0.037) TCGA-IB-7651-01 8 142176355 142176355 G A DENND3 Silent p.S460S 0.16 TCGA-IB-7651-01 8 142178477 142178477 G A DENND3 Missense_Mutation p.E630K 0.19 tolerated(0.17) possibly_damaging(0.796) TCGA-IB-7651-01 8 142227289 142227289 C T SLC45A4 Splice_Site p.X493_splice 0.20 TCGA-IB-7651-01 8 142228354 142228354 T G SLC45A4 Missense_Mutation p.Q411P 0.17 tolerated(0.07) probably_damaging(0.974) TCGA-IB-7651-01 8 142228727 142228727 C T SLC45A4 Missense_Mutation p.A287T 0.13 tolerated(0.15) benign(0.021) TCGA-IB-7651-01 8 142488817 142488817 C T MROH5 3'UTR 0.14 TCGA-IB-7651-01 8 143603441 143603441 G A BAI1 Missense_Mutation p.R1047H 0.26 deleterious(0) benign(0.004) TCGA-IB-7651-01 8 143607953 143607953 C T BAI1 Silent p.D1121D 0.14 TCGA-IB-7651-01 8 143694703 143694703 C A ARC Missense_Mutation p.Q310H 0.21 tolerated(0.14) probably_damaging(0.994) TCGA-IB-7651-01 8 143781978 143781978 C T LY6K Silent p.A11A 0.18 TCGA-IB-7651-01 8 143822544 143822544 G A SLURP1 3'UTR 0.20 TCGA-IB-7651-01 8 143857418 143857418 G T LYNX1 5'UTR 0.14 TCGA-IB-7651-01 8 143956537 143956537 G A CYP11B1 Missense_Mutation p.R412C 0.18 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 8 143993250 143993250 G A CYP11B2 3'UTR 0.15 TCGA-IB-7651-01 8 144102804 144102804 C T LY6E Silent p.S42S 0.05 TCGA-IB-7651-01 8 144240263 144240263 G A LY6H Silent p.S69S 0.15 TCGA-IB-7651-01 8 144332465 144332465 C T ZFP41 Missense_Mutation p.A151V 0.15 deleterious(0.04) possibly_damaging(0.806) TCGA-IB-7651-01 8 144378799 144378799 G T ZNF696 Missense_Mutation p.E318D 0.17 deleterious(0) possibly_damaging(0.896) TCGA-IB-7651-01 8 144463859 144463859 G A RHPN1 Missense_Mutation p.A536T 0.14 tolerated(0.25) possibly_damaging(0.718) TCGA-IB-7651-01 8 144589969 144589969 C T ZC3H3 Silent p.P554P 0.12 TCGA-IB-7651-01 8 144643581 144643581 C T GSDMD Missense_Mutation p.P242S 0.22 tolerated(0.5) benign(0.156) TCGA-IB-7651-01 8 144663295 144663295 T C EEF1D Missense_Mutation p.K473E 0.06 deleterious(0) benign(0.045) TCGA-IB-7651-01 8 144671274 144671274 C T EEF1D Silent p.E326E 0.20 TCGA-IB-7651-01 8 144671318 144671318 C T EEF1D Missense_Mutation p.A312T 0.21 tolerated(0.09) benign(0.096) TCGA-IB-7651-01 8 144672378 144672378 G A EEF1D Intron 0.10 TCGA-IB-7651-01 8 144695733 144695733 C T TSTA3 Silent p.E257E 0.14 TCGA-IB-7651-01 8 144732313 144732313 G T ZNF623 Nonsense_Mutation p.G91* 0.18 TCGA-IB-7651-01 8 144776463 144776463 C T ZNF707 Silent p.C293C 0.21 TCGA-IB-7651-01 8 144776726 144776726 G A ZNF707 3'UTR 0.18 TCGA-IB-7651-01 8 144800977 144800977 G A MAPK15 Missense_Mutation p.G107S 0.19 tolerated(0.26) benign(0.012) TCGA-IB-7651-01 8 144801568 144801568 C T MAPK15 Missense_Mutation p.R213W 0.15 deleterious(0.05) probably_damaging(0.998) TCGA-IB-7651-01 8 144812445 144812445 G A FAM83H Missense_Mutation p.A103V 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-IB-7651-01 8 144812742 144812742 C T FAM83H Missense_Mutation p.R4H 0.15 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 8 144885613 144885613 G A SCRIB Silent p.G1181G 0.18 TCGA-IB-7651-01 8 144890804 144890804 G A SCRIB Missense_Mutation p.A697V 0.18 benign(0.005) TCGA-IB-7651-01 8 144893409 144893409 C A SCRIB Missense_Mutation p.S338I 0.18 possibly_damaging(0.735) TCGA-IB-7651-01 8 144899948 144899948 G A PUF60 Silent p.Y274Y 0.21 TCGA-IB-7651-01 8 144919856 144919856 G A NRBP2 Silent p.R304R 0.12 TCGA-IB-7651-01 8 144942172 144942172 G A EPPK1 Silent p.P1750P 0.18 TCGA-IB-7651-01 8 144943253 144943253 C T EPPK1 Missense_Mutation p.S1390N 0.20 benign(0.027) TCGA-IB-7651-01 8 144945010 144945010 C T EPPK1 Silent p.P804P 0.09 TCGA-IB-7651-01 8 144947078 144947078 G T EPPK1 Missense_Mutation p.A115D 0.16 probably_damaging(0.999) TCGA-IB-7651-01 8 144991209 144991209 G A PLEC Silent p.P4397P 0.09 TCGA-IB-7651-01 8 144991545 144991545 C T PLEC Silent p.T4285T 0.18 TCGA-IB-7651-01 8 144991599 144991599 C T PLEC Silent p.T4267T 0.06 TCGA-IB-7651-01 8 144991705 144991705 G A PLEC Missense_Mutation p.T4232M 0.18 probably_damaging(0.998) TCGA-IB-7651-01 8 144992998 144992998 T C PLEC Missense_Mutation p.N3801S 0.12 benign(0.074) TCGA-IB-7651-01 8 144994963 144994963 T C PLEC Missense_Mutation p.D3146G 0.18 possibly_damaging(0.776) TCGA-IB-7651-01 8 144995573 144995573 G T PLEC Missense_Mutation p.L2943M 0.17 probably_damaging(1) TCGA-IB-7651-01 8 144995861 144995861 G A PLEC Silent p.L2847L 0.17 TCGA-IB-7651-01 8 144995928 144995928 G A PLEC Silent p.D2824D 0.18 TCGA-IB-7651-01 8 144996821 144996821 C A PLEC Nonsense_Mutation p.E2563* 0.17 TCGA-IB-7651-01 8 144997397 144997397 G A PLEC Missense_Mutation p.R2371C 0.18 probably_damaging(0.987) TCGA-IB-7651-01 8 144997698 144997698 C T PLEC Silent p.A2270A 0.17 TCGA-IB-7651-01 8 145001678 145001678 A - PLEC Frame_Shift_Del p.L1356Wfs*69 0.17 TCGA-IB-7651-01 8 145004326 145004326 C A PLEC Missense_Mutation p.Q1003H 0.25 unknown(0) TCGA-IB-7651-01 8 145007091 145007091 T G PLEC Missense_Mutation p.Q673P 0.18 unknown(0) TCGA-IB-7651-01 8 145007511 145007511 C A PLEC Silent p.R561R 0.17 TCGA-IB-7651-01 8 145008523 145008523 G T PLEC Missense_Mutation p.L515M 0.17 unknown(0) TCGA-IB-7651-01 8 145024727 145024727 G A PLEC Missense_Mutation p.R50C 0.08 unknown(0) TCGA-IB-7651-01 8 145024774 145024774 C T PLEC Missense_Mutation p.R34H 0.16 unknown(0) TCGA-IB-7651-01 8 145057668 145057668 C A PARP10 Nonsense_Mutation p.E697* 0.23 TCGA-IB-7651-01 8 145095869 145095869 A G SPATC1 Silent p.P389P 0.18 TCGA-IB-7651-01 8 145109470 145109470 C T OPLAH Missense_Mutation p.E894K 0.17 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 8 145111082 145111082 G A OPLAH Silent p.L688L 0.17 TCGA-IB-7651-01 8 145112597 145112597 C T OPLAH Silent p.T392T 0.09 TCGA-IB-7651-01 8 145114642 145114642 C T OPLAH Missense_Mutation p.A75T 0.19 deleterious(0.05) benign(0.227) TCGA-IB-7651-01 8 145114814 145114814 G T OPLAH Missense_Mutation p.A41D 0.17 tolerated(0.37) benign(0.071) TCGA-IB-7651-01 8 145151980 145151980 C A CYC1 Silent p.T272T 0.19 TCGA-IB-7651-01 8 145235357 145235357 G A MROH1 Missense_Mutation p.V165I 0.17 tolerated(1) benign(0.001) TCGA-IB-7651-01 8 145512876 145512876 C T BOP1 Missense_Mutation p.S70N 0.15 tolerated(0.16) benign(0.005) TCGA-IB-7651-01 8 145533580 145533580 G A HSF1 Silent p.K162K 0.14 TCGA-IB-7651-01 8 145541760 145541760 C T DGAT1 Missense_Mutation p.R250H 0.14 deleterious(0.02) benign(0.105) TCGA-IB-7651-01 8 145583404 145583404 G A SLC52A2 Silent p.V84V 0.17 TCGA-IB-7651-01 8 145583671 145583671 G A SLC52A2 Silent p.P173P 0.22 TCGA-IB-7651-01 8 145584110 145584110 G A SLC52A2 Missense_Mutation p.A320T 0.17 deleterious(0) probably_damaging(0.911) TCGA-IB-7651-01 8 145584275 145584275 T C SLC52A2 Missense_Mutation p.S343P 0.21 deleterious(0.01) possibly_damaging(0.863) TCGA-IB-7651-01 8 145584484 145584484 C A SLC52A2 Missense_Mutation p.L383I 0.09 tolerated(0.55) benign(0.083) TCGA-IB-7651-01 8 145620531 145620531 G A CPSF1 Missense_Mutation p.R1046C 0.21 tolerated(0.11) benign(0.112) TCGA-IB-7651-01 8 145623813 145623813 C A CPSF1 Missense_Mutation p.E591D 0.09 deleterious(0.04) possibly_damaging(0.649) TCGA-IB-7651-01 8 145625850 145625850 C A CPSF1 Missense_Mutation p.A242S 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-IB-7651-01 8 145637889 145637889 C A SLC39A4 3'UTR 0.08 TCGA-IB-7651-01 8 145638654 145638654 C T SLC39A4 Missense_Mutation p.A532T 0.13 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 8 145640153 145640153 G T SLC39A4 Missense_Mutation p.S311Y 0.16 deleterious(0.01) benign(0.298) TCGA-IB-7651-01 8 145641572 145641572 A G SLC39A4 Intron 0.12 TCGA-IB-7651-01 8 145666464 145666464 A G TONSL Missense_Mutation p.L299P 0.15 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 8 145724155 145724155 C T PPP1R16A Missense_Mutation p.R88C 0.12 tolerated(0.13) benign(0.179) TCGA-IB-7651-01 8 145725514 145725514 A C PPP1R16A Missense_Mutation p.N171T 0.12 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 8 145729820 145729820 G T GPT Missense_Mutation p.A45S 0.07 tolerated(0.09) probably_damaging(0.999) TCGA-IB-7651-01 8 145736717 145736717 G A RECQL4 3'UTR 0.16 TCGA-IB-7651-01 8 145740380 145740380 G A RECQL4 Silent p.S520S 0.23 TCGA-IB-7651-01 8 145741444 145741444 G A RECQL4 Silent p.Y353Y 0.19 TCGA-IB-7651-01 8 145745329 145745329 G A LRRC14 Missense_Mutation p.A74T 0.14 tolerated(0.56) benign(0.225) TCGA-IB-7651-01 8 145745828 145745828 C T LRRC14 Missense_Mutation p.A179V 0.15 tolerated(0.19) benign(0.031) TCGA-IB-7651-01 8 145746029 145746029 G A LRRC14 Missense_Mutation p.R246H 0.16 deleterious(0.05) possibly_damaging(0.768) TCGA-IB-7651-01 8 145753256 145753256 G A C8orf82 Intron 0.18 TCGA-IB-7651-01 8 145757761 145757761 C T ARHGAP39 Missense_Mutation p.E970K 0.14 deleterious(0) benign(0.362) TCGA-IB-7651-01 8 145770921 145770921 C T ARHGAP39 Missense_Mutation p.E745K 0.10 deleterious(0) possibly_damaging(0.463) TCGA-IB-7651-01 8 145771066 145771066 G T ARHGAP39 Missense_Mutation p.N696K 0.11 deleterious(0.01) possibly_damaging(0.493) TCGA-IB-7651-01 8 145999156 145999156 C T ZNF34 Missense_Mutation p.C393Y 0.26 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 8 146033667 146033667 G A ZNF517 Missense_Mutation p.A456T 0.22 tolerated(0.45) benign(0.019) TCGA-IB-7651-01 8 146107485 146107485 G T ZNF250 Silent p.P366P 0.19 TCGA-IB-7651-01 8 146156950 146156950 T G ZNF16 Missense_Mutation p.N408T 0.18 tolerated(0.07) benign(0.178) TCGA-IB-7651-01 8 1496810 1496810 C T DLGAP2 5'UTR 0.24 TCGA-IB-7651-01 8 1580998 1580998 C T DLGAP2 Silent p.S452S 0.10 TCGA-IB-7651-01 8 16026093 16026093 T C MSR1 Silent p.G168G 0.18 TCGA-IB-7651-01 8 16026334 16026334 G A MSR1 Missense_Mutation p.T88I 0.19 tolerated(0.39) benign(0.001) TCGA-IB-7651-01 8 1624783 1624783 C T DLGAP2 Nonsense_Mutation p.R683* 0.14 TCGA-IB-7651-01 8 1626412 1626412 C T DLGAP2 Missense_Mutation p.T694M 0.14 deleterious(0.03) probably_damaging(0.996) TCGA-IB-7651-01 8 17055101 17055101 C A ZDHHC2 Nonsense_Mutation p.Y128* 0.19 TCGA-IB-7651-01 8 17055914 17055914 T C ZDHHC2 Silent p.H156H 0.16 TCGA-IB-7651-01 8 17125834 17125834 T G VPS37A Missense_Mutation p.L90V 0.15 tolerated(0.07) benign(0.285) TCGA-IB-7651-01 8 17132303 17132303 C T VPS37A Missense_Mutation p.P160S 0.17 tolerated(0.32) benign(0.002) TCGA-IB-7651-01 8 17132334 17132334 T G VPS37A Missense_Mutation p.I170S 0.19 tolerated(0.3) benign(0.007) TCGA-IB-7651-01 8 1719499 1719499 C T CLN8 Silent p.A93A 0.09 TCGA-IB-7651-01 8 17228582 17228582 C T MTMR7 Missense_Mutation p.D92N 0.07 tolerated(0.05) benign(0.003) TCGA-IB-7651-01 8 17396407 17396407 C T SLC7A2 Missense_Mutation p.P25L 0.18 deleterious_low_confidence(0.01) benign(0) TCGA-IB-7651-01 8 17422552 17422552 T G SLC7A2 Missense_Mutation p.V665G 0.17 tolerated(0.42) benign(0.003) TCGA-IB-7651-01 8 17579450 17579450 G A MTUS1 Intron 0.15 TCGA-IB-7651-01 8 17611250 17611250 A G MTUS1 Silent p.T689T 0.16 TCGA-IB-7651-01 8 17612546 17612546 A G MTUS1 Silent p.V257V 0.17 TCGA-IB-7651-01 8 17726143 17726143 T G FGL1 Missense_Mutation p.R231S 0.18 tolerated(0.17) benign(0.027) TCGA-IB-7651-01 8 17869310 17869310 A G PCM1 Missense_Mutation p.T1829A 0.17 tolerated(0.36) benign(0.133) TCGA-IB-7651-01 8 17883088 17883088 G T PCM1 Missense_Mutation p.Q1990H 0.14 deleterious(0) benign(0.019) TCGA-IB-7651-01 8 17917112 17917112 G A ASAH1 Nonsense_Mutation p.R312* 0.16 TCGA-IB-7651-01 8 18258174 18258174 T G NAT2 Missense_Mutation p.S221A 0.18 deleterious(0) probably_damaging(0.978) TCGA-IB-7651-01 8 18725375 18725375 C T PSD3 Missense_Mutation p.M481I 0.20 deleterious(0.02) probably_damaging(0.991) TCGA-IB-7651-01 8 1874553 1874553 C A ARHGEF10 Missense_Mutation p.A874D 0.08 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 8 192901 192901 C T ZNF596 Silent p.F9F 0.13 TCGA-IB-7651-01 8 19315993 19315993 A G CSGALNACT1 Silent p.V265V 0.18 TCGA-IB-7651-01 8 195764 195764 C T ZNF596 Missense_Mutation p.P306L 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-IB-7651-01 8 196523 196523 A G ZNF596 3'UTR 0.22 TCGA-IB-7651-01 8 19675132 19675132 G A INTS10 Nonsense_Mutation p.W28* 0.09 TCGA-IB-7651-01 8 19681555 19681555 G A INTS10 Missense_Mutation p.R279Q 0.17 tolerated(0.05) possibly_damaging(0.656) TCGA-IB-7651-01 8 19682423 19682423 C T INTS10 Silent p.L316L 0.18 TCGA-IB-7651-01 8 19689592 19689592 A C INTS10 Missense_Mutation p.I450L 0.08 tolerated(0.66) benign(0.001) TCGA-IB-7651-01 8 19805714 19805714 G A LPL Missense_Mutation p.E38K 0.17 tolerated(0.31) benign(0.274) TCGA-IB-7651-01 8 19816893 19816893 T C LPL Splice_Site p.X380_splice 0.21 TCGA-IB-7651-01 8 19822867 19822867 A G LPL 3'UTR 0.19 TCGA-IB-7651-01 8 20003208 20003208 G A SLC18A1 3'UTR 0.19 TCGA-IB-7651-01 8 20068811 20068811 G A ATP6V1B2 Missense_Mutation p.G196E 0.09 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 8 20072363 20072363 G A ATP6V1B2 Missense_Mutation p.R321Q 0.20 deleterious(0.04) benign(0.292) TCGA-IB-7651-01 8 20077935 20077935 G A ATP6V1B2 3'UTR 0.15 TCGA-IB-7651-01 8 20110415 20110415 G A LZTS1 Missense_Mutation p.R343W 0.16 deleterious(0) benign(0.001) TCGA-IB-7651-01 8 20110763 20110763 G A LZTS1 Silent p.L227L 0.20 TCGA-IB-7651-01 8 21608179 21608179 G A GFRA2 Missense_Mutation p.P239S 0.13 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 8 21840243 21840243 C T XPO7 Silent p.P399P 0.17 TCGA-IB-7651-01 8 21844746 21844746 C T XPO7 Missense_Mutation p.R558C 0.17 deleterious(0.05) possibly_damaging(0.516) TCGA-IB-7651-01 8 21926954 21926954 G A DMTN Missense_Mutation p.G107R 0.18 deleterious(0.03) benign(0.111) TCGA-IB-7651-01 8 21955759 21955759 C A FAM160B2 Missense_Mutation p.L236M 0.18 tolerated(0.23) possibly_damaging(0.516) TCGA-IB-7651-01 8 21965776 21965776 C A NUDT18 Nonsense_Mutation p.E82* 0.13 TCGA-IB-7651-01 8 21982906 21982906 C T HR Silent p.K556K 0.17 TCGA-IB-7651-01 8 21982977 21982977 C A HR Missense_Mutation p.A533S 0.16 tolerated(0.6) benign(0.007) TCGA-IB-7651-01 8 21985060 21985060 C T HR Missense_Mutation p.D299N 0.19 tolerated(0.95) benign(0) TCGA-IB-7651-01 8 21986450 21986450 G A HR Silent p.G78G 0.19 TCGA-IB-7651-01 8 21986527 21986527 C T HR Missense_Mutation p.V53I 0.18 tolerated_low_confidence(0.34) benign(0.002) TCGA-IB-7651-01 8 22020132 22020132 C T SFTPC Missense_Mutation p.P30S 0.17 tolerated(0.09) possibly_damaging(0.818) TCGA-IB-7651-01 8 22021513 22021513 G A SFTPC Missense_Mutation p.V185M 0.17 tolerated(0.15) benign(0.098) TCGA-IB-7651-01 8 22035193 22035193 C A BMP1 Intron 0.19 TCGA-IB-7651-01 8 22037910 22037910 G A BMP1 Missense_Mutation p.G331S 0.09 deleterious(0.01) probably_damaging(0.964) TCGA-IB-7651-01 8 22053064 22053064 G A BMP1 Missense_Mutation p.G577R 0.06 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 8 22058842 22058842 C T BMP1 Intron 0.19 TCGA-IB-7651-01 8 22059428 22059428 C T BMP1 Silent p.H740H 0.13 TCGA-IB-7651-01 8 22064400 22064400 G A BMP1 Missense_Mutation p.G756D 0.19 deleterious(0.02) probably_damaging(0.996) TCGA-IB-7651-01 8 22067082 22067082 C T BMP1 Silent p.Y900Y 0.17 TCGA-IB-7651-01 8 22069241 22069241 A G BMP1 Nonstop_Mutation p.*987Wext*45 0.17 TCGA-IB-7651-01 8 22069260 22069260 C T BMP1 3'UTR 0.22 TCGA-IB-7651-01 8 22079169 22079169 C T PHYHIP Silent p.T230T 0.10 TCGA-IB-7651-01 8 22108223 22108223 C T POLR3D 3'UTR 0.28 TCGA-IB-7651-01 8 22140627 22140627 A C PIWIL2 Missense_Mutation p.K169T 0.15 tolerated(0.34) benign(0.034) TCGA-IB-7651-01 8 22161539 22161539 C A PIWIL2 Missense_Mutation p.A396D 0.16 tolerated(0.58) benign(0.002) TCGA-IB-7651-01 8 22168639 22168639 C A PIWIL2 Missense_Mutation p.F605L 0.19 tolerated(0.62) benign(0.01) TCGA-IB-7651-01 8 22277299 22277299 G A SLC39A14 3'UTR 0.16 TCGA-IB-7651-01 8 22439020 22439020 G A PDLIM2 Silent p.S324S 0.12 TCGA-IB-7651-01 8 22458661 22458661 G A C8orf58 Missense_Mutation p.A103T 0.15 tolerated(0.13) benign(0.005) TCGA-IB-7651-01 8 22475262 22475262 G T CCAR2 Nonsense_Mutation p.E682* 0.14 TCGA-IB-7651-01 8 22548815 22548815 C T EGR3 Missense_Mutation p.G112E 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 8 22864647 22864647 C A RHOBTB2 Missense_Mutation p.L319I 0.18 tolerated(0.23) benign(0.013) TCGA-IB-7651-01 8 22864733 22864733 A G RHOBTB2 Silent p.Q347Q 0.22 TCGA-IB-7651-01 8 22884752 22884752 C T TNFRSF10B Missense_Mutation p.S277N 0.19 tolerated(0.18) benign(0.128) TCGA-IB-7651-01 8 22887129 22887129 C T TNFRSF10B Missense_Mutation p.R157H 0.17 tolerated(0.17) benign(0.006) TCGA-IB-7651-01 8 23021500 23021500 C T TNFRSF10D 5'UTR 0.16 TCGA-IB-7651-01 8 23106877 23106877 G A CHMP7 Missense_Mutation p.A152T 0.16 deleterious(0.05) benign(0.037) TCGA-IB-7651-01 8 23117774 23117774 A G CHMP7 Missense_Mutation p.N413S 0.19 tolerated_low_confidence(0.8) benign(0.001) TCGA-IB-7651-01 8 23185946 23185946 G T LOXL2 Missense_Mutation p.L367M 0.23 tolerated(0.06) possibly_damaging(0.604) TCGA-IB-7651-01 8 23198655 23198655 C T LOXL2 Missense_Mutation p.R198H 0.17 tolerated(0.08) benign(0.26) TCGA-IB-7651-01 8 23217627 23217627 G A LOXL2 Silent p.D169D 0.12 TCGA-IB-7651-01 8 23302059 23302059 T C ENTPD4 Missense_Mutation p.N158S 0.21 tolerated(1) benign(0.001) TCGA-IB-7651-01 8 23305394 23305394 G T ENTPD4 Missense_Mutation p.L71M 0.10 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 8 23307505 23307505 G T ENTPD4 5'UTR 0.17 TCGA-IB-7651-01 8 23709021 23709021 G T STC1 Missense_Mutation p.S95R 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 8 24151661 24151661 G A ADAM28 5'UTR 0.18 TCGA-IB-7651-01 8 24181515 24181515 A C ADAM28 Missense_Mutation p.T297P 0.17 deleterious(0) probably_damaging(0.966) TCGA-IB-7651-01 8 24254940 24254940 C T ADAMDEC1 Nonsense_Mutation p.R200* 0.19 TCGA-IB-7651-01 8 24262814 24262814 C T ADAMDEC1 3'UTR 0.08 TCGA-IB-7651-01 8 24342814 24342814 G A ADAM7 Silent p.V300V 0.15 TCGA-IB-7651-01 8 24346730 24346730 G A ADAM7 Missense_Mutation p.D384N 0.14 tolerated(0.08) benign(0.269) TCGA-IB-7651-01 8 24772180 24772180 T C NEFM Missense_Mutation p.F292L 0.07 deleterious(0) unknown(0) TCGA-IB-7651-01 8 24813505 24813505 C T CTD-2168K21.2 5'Flank 0.17 TCGA-IB-7651-01 8 25183050 25183050 G A DOCK5 Silent p.K630K 0.17 TCGA-IB-7651-01 8 25193798 25193798 G A DOCK5 Missense_Mutation p.D746N 0.15 tolerated(0.29) benign(0.334) TCGA-IB-7651-01 8 25246651 25246651 G A DOCK5 Silent p.E1392E 0.21 TCGA-IB-7651-01 8 25293013 25293013 C A KCTD9 Missense_Mutation p.G227C 0.06 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 8 25337590 25337590 C T CDCA2 Missense_Mutation p.R328C 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 8 25364262 25364262 G A CDCA2 Missense_Mutation p.A694T 0.19 deleterious(0.04) probably_damaging(0.975) TCGA-IB-7651-01 8 26151208 26151208 T C PPP2R2A Missense_Mutation p.W22R 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 8 26227791 26227791 G T PPP2R2A Missense_Mutation p.K412N 0.07 deleterious(0.04) benign(0.054) TCGA-IB-7651-01 8 26236894 26236894 T C BNIP3L 5'Flank 0.20 TCGA-IB-7651-01 8 26238355 26238355 G A BNIP3L 5'Flank 0.09 TCGA-IB-7651-01 8 26238419 26238419 C T BNIP3L 5'Flank 0.18 TCGA-IB-7651-01 8 26365196 26365196 T G PNMA2 Missense_Mutation p.N359T 0.17 tolerated_low_confidence(0.24) benign(0.002) TCGA-IB-7651-01 8 26492332 26492332 G A DPYSL2 Missense_Mutation p.A243T 0.18 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 8 27145212 27145212 C T TRIM35 Missense_Mutation p.R446H 0.22 tolerated(0.19) benign(0.006) TCGA-IB-7651-01 8 27315813 27315813 C T PTK2B Silent p.I939I 0.16 TCGA-IB-7651-01 8 27320801 27320801 C T CHRNA2 Missense_Mutation p.V387M 0.19 tolerated(0.11) benign(0.005) TCGA-IB-7651-01 8 27327295 27327295 C T CHRNA2 Missense_Mutation p.A93T 0.16 tolerated(0.21) possibly_damaging(0.881) TCGA-IB-7651-01 8 27455643 27455643 G A CLU 3'UTR 0.12 TCGA-IB-7651-01 8 27462673 27462673 C T CLU Silent p.E199E 0.09 TCGA-IB-7651-01 8 27514340 27514340 A G SCARA3 Missense_Mutation p.T90A 0.17 tolerated(1) benign(0.001) TCGA-IB-7651-01 8 27605688 27605688 G A CCDC25 Missense_Mutation p.R153C 0.15 tolerated(0.1) benign(0.005) TCGA-IB-7651-01 8 27634227 27634227 G A ESCO2 Silent p.K134K 0.21 TCGA-IB-7651-01 8 27737093 27737093 G A SCARA5 Silent p.F448F 0.05 TCGA-IB-7651-01 8 27987089 27987089 C T ELP3 Nonsense_Mutation p.R230* 0.21 TCGA-IB-7651-01 8 2800060 2800060 G A CSMD1 Missense_Mutation p.A3490V 0.24 possibly_damaging(0.89) TCGA-IB-7651-01 8 2818703 2818703 G A CSMD1 Missense_Mutation p.T3221M 0.17 probably_damaging(0.968) TCGA-IB-7651-01 8 28196589 28196589 C - PNOC Frame_Shift_Del p.S55Afs*99 0.09 TCGA-IB-7651-01 8 28217156 28217156 C A ZNF395 Missense_Mutation p.Q142H 0.22 tolerated(0.12) possibly_damaging(0.537) TCGA-IB-7651-01 8 2832035 2832035 C T CSMD1 Missense_Mutation p.G2893D 0.15 probably_damaging(0.999) TCGA-IB-7651-01 8 28385002 28385002 C T FZD3 Missense_Mutation p.A242V 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 8 28385340 28385340 G A FZD3 Missense_Mutation p.D355N 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 8 28573951 28573951 G T EXTL3 Missense_Mutation p.K125N 0.15 tolerated(0.16) benign(0.028) TCGA-IB-7651-01 8 28574109 28574109 G A EXTL3 Missense_Mutation p.R178Q 0.17 tolerated(0.29) benign(0.007) TCGA-IB-7651-01 8 28574117 28574117 A G EXTL3 Missense_Mutation p.N181D 0.10 tolerated(0.19) benign(0.004) TCGA-IB-7651-01 8 28575113 28575113 C T EXTL3 Missense_Mutation p.R513C 0.19 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 8 28575713 28575713 G A EXTL3 Missense_Mutation p.V713I 0.21 deleterious(0.01) benign(0.21) TCGA-IB-7651-01 8 28747466 28747466 A G INTS9 5'UTR 0.19 TCGA-IB-7651-01 8 2886927 2886927 G T CSMD1 Missense_Mutation p.P2590H 0.20 possibly_damaging(0.891) TCGA-IB-7651-01 8 28976427 28976427 C A KIF13B Missense_Mutation p.E1206D 0.13 tolerated(1) benign(0.005) TCGA-IB-7651-01 8 29004938 29004938 C A KIF13B Missense_Mutation p.Q665H 0.21 tolerated(0.2) benign(0.019) TCGA-IB-7651-01 8 29923589 29923589 C A TMEM66 Missense_Mutation p.W303C 0.11 deleterious(0.04) probably_damaging(0.934) TCGA-IB-7651-01 8 30209854 30209854 G A TUBBP1 RNA 0.20 TCGA-IB-7651-01 8 30210008 30210008 G A TUBBP1 RNA 0.21 TCGA-IB-7651-01 8 30623764 30623764 A G UBXN8 RNA 0.15 TCGA-IB-7651-01 8 30655229 30655229 G A PPP2CB Silent p.H118H 0.15 TCGA-IB-7651-01 8 30690823 30690823 T G TEX15 Missense_Mutation p.E2783D 0.17 tolerated(0.26) benign(0.059) TCGA-IB-7651-01 8 30695464 30695464 C A TEX15 Missense_Mutation p.G2396V 0.19 deleterious(0.04) possibly_damaging(0.742) TCGA-IB-7651-01 8 30700178 30700178 G A TEX15 Missense_Mutation p.S2119L 0.17 deleterious(0.02) possibly_damaging(0.743) TCGA-IB-7651-01 8 30701930 30701930 G A TEX15 Missense_Mutation p.P1535L 0.17 tolerated(0.28) benign(0.035) TCGA-IB-7651-01 8 30705470 30705470 C A TEX15 Missense_Mutation p.S355I 0.16 deleterious(0) possibly_damaging(0.735) TCGA-IB-7651-01 8 3087562 3087562 C A CSMD1 Missense_Mutation p.A1449S 0.14 possibly_damaging(0.452) TCGA-IB-7651-01 8 3141743 3141743 C A CSMD1 Missense_Mutation p.S1359I 0.12 probably_damaging(0.986) TCGA-IB-7651-01 8 3216710 3216710 G A CSMD1 Missense_Mutation p.R1090C 0.16 probably_damaging(0.999) TCGA-IB-7651-01 8 32453476 32453476 G A NRG1 Silent p.L77L 0.17 TCGA-IB-7651-01 8 32505236 32505236 G A NRG1 Intron 0.16 TCGA-IB-7651-01 8 3253870 3253870 C T CSMD1 Silent p.E813E 0.21 TCGA-IB-7651-01 8 32600219 32600219 G A NRG1 Missense_Mutation p.R220H 0.22 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 8 32621451 32621451 G T NRG1 Missense_Mutation p.R490M 0.17 tolerated(0.24) possibly_damaging(0.694) TCGA-IB-7651-01 8 32621526 32621526 A G NRG1 Missense_Mutation p.N515S 0.13 tolerated(0.22) benign(0.023) TCGA-IB-7651-01 8 33319100 33319100 C A FUT10 5'UTR 0.23 TCGA-IB-7651-01 8 33356000 33356000 C T MAK16 Silent p.S252S 0.18 TCGA-IB-7651-01 8 33406322 33406322 A G RNF122 Silent p.S139S 0.17 TCGA-IB-7651-01 8 33454996 33454996 A C DUSP26 Missense_Mutation p.F13C 0.18 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-IB-7651-01 8 35425705 35425705 G A UNC5D Missense_Mutation p.A138T 0.16 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 8 35583857 35583857 G T UNC5D Missense_Mutation p.E497D 0.13 tolerated(0.88) benign(0.002) TCGA-IB-7651-01 8 36641924 36641924 C T KCNU1 5'UTR 0.13 TCGA-IB-7651-01 8 36694367 36694367 C T KCNU1 Silent p.C474C 0.09 TCGA-IB-7651-01 8 36793196 36793196 T G KCNU1 Missense_Mutation p.S1070A 0.20 tolerated(0.66) benign(0) TCGA-IB-7651-01 8 37687516 37687516 G T GPR124 Missense_Mutation p.E234D 0.22 tolerated(0.09) benign(0.014) TCGA-IB-7651-01 8 37691268 37691268 G A GPR124 Silent p.E453E 0.20 TCGA-IB-7651-01 8 37702272 37702272 C T BRF2 Silent p.G332G 0.23 TCGA-IB-7651-01 8 37702377 37702377 G A BRF2 Silent p.I297I 0.19 TCGA-IB-7651-01 8 37732351 37732351 G T RAB11FIP1 Missense_Mutation p.S435Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 8 37732467 37732467 C T RAB11FIP1 Silent p.P396P 0.20 TCGA-IB-7651-01 8 38002748 38002748 C T STAR Missense_Mutation p.D246N 0.18 deleterious(0.01) probably_damaging(0.918) TCGA-IB-7651-01 8 38006170 38006170 C T STAR Missense_Mutation p.S56N 0.17 tolerated(0.16) benign(0.003) TCGA-IB-7651-01 8 38006257 38006257 G A STAR Missense_Mutation p.A27V 0.14 deleterious(0.03) possibly_damaging(0.858) TCGA-IB-7651-01 8 38103326 38103326 G A DDHD2 Silent p.L305L 0.18 TCGA-IB-7651-01 8 38105252 38105252 G T DDHD2 Missense_Mutation p.D383Y 0.15 deleterious(0.01) benign(0.423) TCGA-IB-7651-01 8 38123804 38123804 C T PPAPDC1B Silent p.A163A 0.11 TCGA-IB-7651-01 8 38250638 38250638 T C LETM2 Intron 0.13 TCGA-IB-7651-01 8 38369847 38369847 C T C8orf86 3'UTR 0.19 TCGA-IB-7651-01 8 38369971 38369971 G A C8orf86 Silent p.T202T 0.19 TCGA-IB-7651-01 8 38677324 38677324 C T TACC1 Missense_Mutation p.P188S 0.20 tolerated(0.15) benign(0.002) TCGA-IB-7651-01 8 38678031 38678031 C T TACC1 Silent p.D423D 0.16 TCGA-IB-7651-01 8 38848844 38848844 G T TM2D2 3'UTR 0.16 TCGA-IB-7651-01 8 38940233 38940233 G A ADAM9 Missense_Mutation p.G652E 0.19 deleterious(0) probably_damaging(0.978) TCGA-IB-7651-01 8 39111964 39111964 C T ADAM32 Missense_Mutation p.S645L 0.10 tolerated(0.67) benign(0.09) TCGA-IB-7651-01 8 39534975 39534975 T G ADAM18 Missense_Mutation p.C517W 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 8 39581413 39581413 G A ADAM18 Missense_Mutation p.A722T 0.18 tolerated(0.87) benign(0) TCGA-IB-7651-01 8 39606846 39606846 G A ADAM2 Missense_Mutation p.P667S 0.18 tolerated(0.37) benign(0.003) TCGA-IB-7651-01 8 39780089 39780089 C T IDO1 Silent p.F152F 0.19 TCGA-IB-7651-01 8 39872830 39872830 C T IDO2 Silent p.I324I 0.16 TCGA-IB-7651-01 8 39873093 39873093 T C IDO2 Missense_Mutation p.L412S 0.16 tolerated(0.72) benign(0.033) TCGA-IB-7651-01 8 40389695 40389695 C T ZMAT4 3'UTR 0.12 TCGA-IB-7651-01 8 41122786 41122786 G A SFRP1 Missense_Mutation p.T282M 0.22 tolerated(0.19) benign(0.392) TCGA-IB-7651-01 8 41161013 41161013 C A SFRP1 Missense_Mutation p.A197S 0.08 tolerated(0.61) benign(0.009) TCGA-IB-7651-01 8 41467268 41467268 C T AGPAT6 Silent p.F110F 0.21 TCGA-IB-7651-01 8 41554206 41554206 G A ANK1 Missense_Mutation p.P949L 0.14 tolerated(0.09) possibly_damaging(0.533) TCGA-IB-7651-01 8 41561607 41561607 G A ANK1 Silent p.I782I 0.17 TCGA-IB-7651-01 8 41571725 41571725 G A ANK1 Silent p.D616D 0.14 TCGA-IB-7651-01 8 41791219 41791219 T G KAT6A Missense_Mutation p.S1507R 0.21 unknown(0) TCGA-IB-7651-01 8 418787 418787 G A FBXO25 Missense_Mutation p.D363N 0.15 tolerated(0.63) probably_damaging(0.996) TCGA-IB-7651-01 8 42012394 42012394 G T AP3M2 Missense_Mutation p.K63N 0.08 tolerated(0.54) benign(0.001) TCGA-IB-7651-01 8 42019805 42019805 C T AP3M2 Missense_Mutation p.T151M 0.18 deleterious(0) benign(0.294) TCGA-IB-7651-01 8 42024803 42024803 A G AP3M2 Missense_Mutation p.T309A 0.17 tolerated(0.63) benign(0.002) TCGA-IB-7651-01 8 42039493 42039493 C T PLAT Missense_Mutation p.R284H 0.16 tolerated(0.58) benign(0.005) TCGA-IB-7651-01 8 42174349 42174349 A G IKBKB Missense_Mutation p.Q351R 0.17 deleterious(0) possibly_damaging(0.649) TCGA-IB-7651-01 8 42178258 42178258 C T IKBKB Silent p.N528N 0.19 TCGA-IB-7651-01 8 42183581 42183581 G A IKBKB Missense_Mutation p.A694T 0.20 tolerated(0.68) benign(0.001) TCGA-IB-7651-01 8 42233345 42233345 A G DKK4 Missense_Mutation p.S39P 0.19 tolerated(0.06) benign(0.052) TCGA-IB-7651-01 8 42725169 42725169 G T RNF170 Silent p.T100T 0.17 TCGA-IB-7651-01 8 42919301 42919301 G A FNTA Missense_Mutation p.R115Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 8 42932451 42932451 C T FNTA Silent p.F242F 0.18 TCGA-IB-7651-01 8 42940355 42940355 G A FNTA Missense_Mutation p.R357K 0.16 tolerated(0.36) benign(0) TCGA-IB-7651-01 8 42977294 42977294 G T POMK Missense_Mutation p.Q109H 0.17 deleterious(0.02) benign(0.002) TCGA-IB-7651-01 8 42978072 42978072 G T POMK 3'UTR 0.11 TCGA-IB-7651-01 8 43027471 43027471 G A HGSNAT Missense_Mutation p.M254I 0.15 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 8 43033296 43033296 C T HGSNAT Silent p.L311L 0.17 TCGA-IB-7651-01 8 48691355 48691355 G A PRKDC Missense_Mutation p.A3861V 0.10 possibly_damaging(0.793) TCGA-IB-7651-01 8 48691356 48691356 C T PRKDC Missense_Mutation p.A3861T 0.12 probably_damaging(0.951) TCGA-IB-7651-01 8 48701608 48701608 A G PRKDC Silent p.D3586D 0.19 TCGA-IB-7651-01 8 48743248 48743248 T C PRKDC Missense_Mutation p.Y2771C 0.13 probably_damaging(1) TCGA-IB-7651-01 8 48790367 48790367 A C PRKDC Missense_Mutation p.L1760V 0.19 possibly_damaging(0.679) TCGA-IB-7651-01 8 48873703 48873703 C T MCM4 5'UTR 0.15 TCGA-IB-7651-01 8 52258438 52258438 C A PXDNL Missense_Mutation p.S1324I 0.16 deleterious(0.01) possibly_damaging(0.697) TCGA-IB-7651-01 8 52321942 52321942 C T PXDNL Missense_Mutation p.A748T 0.20 deleterious(0.04) probably_damaging(0.996) TCGA-IB-7651-01 8 52323862 52323862 C T PXDNL Silent p.Q670Q 0.16 TCGA-IB-7651-01 8 52384855 52384855 C T PXDNL Missense_Mutation p.R235Q 0.15 tolerated(0.24) possibly_damaging(0.663) TCGA-IB-7651-01 8 53074010 53074010 A C ST18 Missense_Mutation p.F507V 0.17 deleterious(0.01) probably_damaging(0.943) TCGA-IB-7651-01 8 53536258 53536258 G A RB1CC1 3'UTR 0.16 TCGA-IB-7651-01 8 53573722 53573722 G T RB1CC1 Missense_Mutation p.P493H 0.23 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 8 53574165 53574165 G T RB1CC1 Missense_Mutation p.L430M 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-IB-7651-01 8 53596231 53596231 G A RB1CC1 Missense_Mutation p.R83C 0.16 deleterious(0.01) possibly_damaging(0.667) TCGA-IB-7651-01 8 53852661 53852661 C T NPBWR1 Missense_Mutation p.A65V 0.14 tolerated(0.42) possibly_damaging(0.662) TCGA-IB-7651-01 8 55055274 55055274 G A MRPL15 Missense_Mutation p.E161K 0.18 deleterious(0) probably_damaging(0.954) TCGA-IB-7651-01 8 55055322 55055322 G T MRPL15 Missense_Mutation p.A177S 0.18 tolerated(0.26) benign(0.277) TCGA-IB-7651-01 8 55533931 55533931 G A RP1 Silent p.A135A 0.19 TCGA-IB-7651-01 8 55537454 55537454 C T RP1 Nonsense_Mutation p.R338* 0.18 TCGA-IB-7651-01 8 55539291 55539291 A C RP1 Missense_Mutation p.N950T 0.15 tolerated(0.19) benign(0.175) TCGA-IB-7651-01 8 55540824 55540824 A C RP1 Missense_Mutation p.N1461T 0.22 deleterious(0) benign(0.051) TCGA-IB-7651-01 8 57129954 57129954 G A CHCHD7 Missense_Mutation p.R98K 0.18 deleterious(0.03) probably_damaging(0.987) TCGA-IB-7651-01 8 57221490 57221490 C T SDR16C5 Missense_Mutation p.A188T 0.12 tolerated(0.31) possibly_damaging(0.865) TCGA-IB-7651-01 8 57228591 57228591 A C SDR16C5 Missense_Mutation p.Y106D 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 8 57354416 57354416 T G PENK Missense_Mutation p.K73N 0.19 tolerated(0.09) benign(0.009) TCGA-IB-7651-01 8 57358278 57358278 G A PENK Intron 0.09 TCGA-IB-7651-01 8 57358545 57358545 G T PENK 5'UTR 0.08 TCGA-IB-7651-01 8 59059135 59059135 C T FAM110B Silent p.L116L 0.16 TCGA-IB-7651-01 8 59360082 59360082 A G UBXN2B Missense_Mutation p.N323S 0.17 deleterious(0.02) probably_damaging(0.995) TCGA-IB-7651-01 8 59404294 59404294 T C CYP7A1 Missense_Mutation p.T419A 0.20 tolerated(0.3) benign(0.001) TCGA-IB-7651-01 8 59512420 59512420 C A NSMAF Nonsense_Mutation p.E479* 0.15 TCGA-IB-7651-01 8 60031563 60031563 G A TOX 5'UTR 0.17 TCGA-IB-7651-01 8 61496780 61496780 C T RAB2A Missense_Mutation p.S67F 0.16 deleterious(0) possibly_damaging(0.855) TCGA-IB-7651-01 8 61729060 61729060 G A CHD7 Silent p.E871E 0.14 TCGA-IB-7651-01 8 61734637 61734637 A C CHD7 Missense_Mutation p.N964H 0.09 possibly_damaging(0.656) TCGA-IB-7651-01 8 61748784 61748784 A G CHD7 Missense_Mutation p.I1311V 0.16 benign(0.017) TCGA-IB-7651-01 8 61750324 61750324 C A CHD7 Missense_Mutation p.A1428D 0.17 probably_damaging(0.997) TCGA-IB-7651-01 8 61768711 61768711 G T CHD7 Missense_Mutation p.A2372S 0.24 benign(0.183) TCGA-IB-7651-01 8 62212434 62212434 G T CLVS1 Missense_Mutation p.W16C 0.17 deleterious_low_confidence(0.02) benign(0.043) TCGA-IB-7651-01 8 623643 623643 C T ERICH1 Missense_Mutation p.A237T 0.20 tolerated(0.27) benign(0.002) TCGA-IB-7651-01 8 62460657 62460657 T G ASPH Missense_Mutation p.K579N 0.20 deleterious(0.02) benign(0.026) TCGA-IB-7651-01 8 62465611 62465611 C T ASPH Missense_Mutation p.M535I 0.18 deleterious(0.01) benign(0.041) TCGA-IB-7651-01 8 62578060 62578060 C T ASPH Intron 0.18 TCGA-IB-7651-01 8 6302292 6302292 G T MCPH1 Missense_Mutation p.R350M 0.14 tolerated(0.14) possibly_damaging(0.723) TCGA-IB-7651-01 8 63659620 63659620 G A NKAIN3 Missense_Mutation p.V135I 0.16 tolerated(0.13) benign(0.309) TCGA-IB-7651-01 8 63927900 63927900 T C GGH Missense_Mutation p.I316M 0.15 tolerated(0.19) benign(0.011) TCGA-IB-7651-01 8 65494072 65494072 C T BHLHE22 Missense_Mutation p.A242V 0.09 tolerated(0.08) benign(0.056) TCGA-IB-7651-01 8 66539594 66539594 C T ARMC1 Missense_Mutation p.A14T 0.18 deleterious(0.02) possibly_damaging(0.704) TCGA-IB-7651-01 8 66619263 66619263 C T MTFR1 Missense_Mutation p.T179I 0.08 tolerated(0.23) benign(0.062) TCGA-IB-7651-01 8 6673409 6673409 A C XKR5 RNA 0.11 TCGA-IB-7651-01 8 6681195 6681195 C T XKR5 RNA 0.18 TCGA-IB-7651-01 8 6690240 6690240 G A GS1-24F4.2 5'Flank 0.18 TCGA-IB-7651-01 8 67040557 67040557 C T TRIM55 Missense_Mutation p.P63S 0.17 tolerated(0.17) benign(0.145) TCGA-IB-7651-01 8 67356848 67356848 C T ADHFE1 Missense_Mutation p.A73V 0.17 tolerated(0.08) benign(0.081) TCGA-IB-7651-01 8 67364315 67364315 C T ADHFE1 Missense_Mutation p.R288W 0.21 deleterious(0) possibly_damaging(0.846) TCGA-IB-7651-01 8 67405895 67405895 G T C8orf46 Missense_Mutation p.Q4H 0.18 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 8 67428313 67428313 G T C8orf46 3'UTR 0.26 TCGA-IB-7651-01 8 67577555 67577555 G A VCPIP1 Nonsense_Mutation p.R547* 0.18 TCGA-IB-7651-01 8 67578482 67578482 A C VCPIP1 Missense_Mutation p.L238V 0.20 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 8 67710851 67710851 T G SGK3 Silent p.L57L 0.05 TCGA-IB-7651-01 8 67771751 67771751 T G SGK3 Missense_Mutation p.L476V 0.19 tolerated(0.51) possibly_damaging(0.519) TCGA-IB-7651-01 8 67789596 67789596 C A MCMDC2 Missense_Mutation p.L100M 0.13 deleterious(0) probably_damaging(0.983) TCGA-IB-7651-01 8 67803173 67803173 C A MCMDC2 Missense_Mutation p.L383I 0.16 tolerated(0.29) benign(0.062) TCGA-IB-7651-01 8 6783472 6783472 A G DEFA6 Missense_Mutation p.L29P 0.22 deleterious(0.02) probably_damaging(1) TCGA-IB-7651-01 8 6783502 6783502 G T DEFA6 Missense_Mutation p.A19D 0.20 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 8 67926689 67926689 G A PPP1R42 Missense_Mutation p.L90F 0.16 deleterious(0) possibly_damaging(0.88) TCGA-IB-7651-01 8 6794269 6794269 G T DEFA4 Missense_Mutation p.S51R 0.18 tolerated(0.83) probably_damaging(0.959) TCGA-IB-7651-01 8 68030998 68030998 G A CSPP1 Missense_Mutation p.V542I 0.16 tolerated(0.28) benign(0.008) TCGA-IB-7651-01 8 68117025 68117025 G A ARFGEF1 Silent p.L1617L 0.15 TCGA-IB-7651-01 8 68117027 68117027 G A ARFGEF1 Missense_Mutation p.A1616V 0.21 tolerated(0.08) possibly_damaging(0.597) TCGA-IB-7651-01 8 68123756 68123756 G T ARFGEF1 Missense_Mutation p.A1594D 0.06 tolerated(0.47) benign(0.003) TCGA-IB-7651-01 8 68183949 68183949 C A ARFGEF1 Missense_Mutation p.K520N 0.18 deleterious(0.01) benign(0.098) TCGA-IB-7651-01 8 68200271 68200271 C T ARFGEF1 Missense_Mutation p.G316R 0.14 tolerated(0.15) benign(0.002) TCGA-IB-7651-01 8 68965365 68965365 A G PREX2 Missense_Mutation p.N326S 0.20 deleterious(0) probably_damaging(0.978) TCGA-IB-7651-01 8 69445334 69445334 C A C8orf34 Missense_Mutation p.S352Y 0.17 deleterious(0.01) probably_damaging(0.978) TCGA-IB-7651-01 8 70517147 70517147 G A SULF1 Missense_Mutation p.A453T 0.16 deleterious(0) possibly_damaging(0.686) TCGA-IB-7651-01 8 70533385 70533385 A C SULF1 Missense_Mutation p.H498P 0.18 tolerated(0.29) benign(0) TCGA-IB-7651-01 8 70585410 70585410 G A SLCO5A1 Silent p.F747F 0.17 TCGA-IB-7651-01 8 70617395 70617395 A C SLCO5A1 Missense_Mutation p.L498R 0.19 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 8 70744219 70744219 C T SLCO5A1 Silent p.S230S 0.19 TCGA-IB-7651-01 8 70744640 70744640 G A SLCO5A1 Missense_Mutation p.A90V 0.17 tolerated_low_confidence(0.1) benign(0.003) TCGA-IB-7651-01 8 70978553 70978553 C T PRDM14 Missense_Mutation p.G367E 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 8 70981662 70981662 C T PRDM14 Missense_Mutation p.G145E 0.13 tolerated(0.16) benign(0.026) TCGA-IB-7651-01 8 71039253 71039253 C T NCOA2 Silent p.Q1237Q 0.11 TCGA-IB-7651-01 8 71041048 71041048 A G NCOA2 Silent p.S1164S 0.18 TCGA-IB-7651-01 8 71068359 71068359 A G NCOA2 Silent p.Y747Y 0.18 TCGA-IB-7651-01 8 71069403 71069403 G T NCOA2 Missense_Mutation p.S399R 0.18 tolerated(0.1) benign(0.115) TCGA-IB-7651-01 8 71508556 71508556 C T TRAM1 Missense_Mutation p.E143K 0.19 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 8 71553220 71553220 G A LACTB2 Nonsense_Mutation p.R220* 0.17 TCGA-IB-7651-01 8 71646310 71646310 G T XKR9 Missense_Mutation p.S258I 0.18 tolerated(0.17) benign(0.15) TCGA-IB-7651-01 8 71646532 71646532 G T XKR9 Missense_Mutation p.G332V 0.13 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 8 72128969 72128969 G A EYA1 Missense_Mutation p.R440W 0.20 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 8 72184056 72184056 C T EYA1 Silent p.G301G 0.18 TCGA-IB-7651-01 8 72184084 72184084 G T EYA1 Missense_Mutation p.S292Y 0.17 deleterious(0.01) possibly_damaging(0.632) TCGA-IB-7651-01 8 72754702 72754702 G A MSC 3'UTR 0.24 TCGA-IB-7651-01 8 72754977 72754977 C A MSC Missense_Mutation p.W180C 0.05 deleterious(0) probably_damaging(0.91) TCGA-IB-7651-01 8 72755888 72755888 C T MSC Missense_Mutation p.V176M 0.16 deleterious(0.01) possibly_damaging(0.74) TCGA-IB-7651-01 8 72756150 72756150 G A MSC Silent p.G88G 0.16 TCGA-IB-7651-01 8 72950237 72950237 G A TRPA1 Missense_Mutation p.A789V 0.08 tolerated(1) benign(0) TCGA-IB-7651-01 8 7320352 7320352 A G SPAG11B Missense_Mutation p.S31P 0.09 tolerated(0.3) possibly_damaging(0.516) TCGA-IB-7651-01 8 73480440 73480440 G A KCNB2 Silent p.E157E 0.16 TCGA-IB-7651-01 8 73848612 73848612 T G KCNB2 Missense_Mutation p.F341C 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 8 73848830 73848830 C T KCNB2 Missense_Mutation p.P414S 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 8 74005092 74005092 G T SBSPON Missense_Mutation p.P71T 0.17 deleterious(0.02) probably_damaging(0.961) TCGA-IB-7651-01 8 74209428 74209428 G A RDH10 Splice_Site p.X97_splice 0.20 TCGA-IB-7651-01 8 74234928 74234928 C A RDH10 Missense_Mutation p.P262H 0.15 tolerated(0.63) possibly_damaging(0.709) TCGA-IB-7651-01 8 74234997 74234997 C T RDH10 Missense_Mutation p.P285L 0.16 tolerated(0.74) possibly_damaging(0.554) TCGA-IB-7651-01 8 74706286 74706286 C T UBE2W 3'UTR 0.22 TCGA-IB-7651-01 8 74859046 74859046 G A TCEB1 Missense_Mutation p.A53V 0.13 tolerated(0.08) benign(0.13) TCGA-IB-7651-01 8 74894718 74894718 T C TMEM70 3'UTR 0.07 TCGA-IB-7651-01 8 74922249 74922249 G T LY96 Missense_Mutation p.K72N 0.16 tolerated(0.09) benign(0.032) TCGA-IB-7651-01 8 75227606 75227606 C T JPH1 Missense_Mutation p.G210D 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 8 75756308 75756308 C T PI15 Silent p.G122G 0.15 TCGA-IB-7651-01 8 76452232 76452232 A G HNF4G Missense_Mutation p.D2G 0.18 deleterious_low_confidence(0.01) benign(0.083) TCGA-IB-7651-01 8 76465367 76465367 C A HNF4G Missense_Mutation p.L184I 0.17 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 8 77616625 77616625 C A ZFHX4 Missense_Mutation p.P101H 0.18 probably_damaging(0.95) TCGA-IB-7651-01 8 77618747 77618747 T C ZFHX4 Silent p.N808N 0.15 TCGA-IB-7651-01 8 77762534 77762534 C A ZFHX4 Silent p.A1300A 0.17 TCGA-IB-7651-01 8 77763508 77763508 C A ZFHX4 Missense_Mutation p.L1451M 0.22 possibly_damaging(0.82) TCGA-IB-7651-01 8 77764149 77764149 T A ZFHX4 Missense_Mutation p.H1664Q 0.10 benign(0.402) TCGA-IB-7651-01 8 77764883 77764883 C A ZFHX4 Missense_Mutation p.A1909D 0.16 possibly_damaging(0.82) TCGA-IB-7651-01 8 77768068 77768068 C T ZFHX4 Missense_Mutation p.R2971C 0.12 probably_damaging(0.995) TCGA-IB-7651-01 8 79510599 79510599 C A PKIA 5'UTR 0.11 TCGA-IB-7651-01 8 79590871 79590871 C T ZC2HC1A Missense_Mutation p.A56V 0.19 deleterious(0.04) probably_damaging(0.999) TCGA-IB-7651-01 8 79652256 79652256 T C IL7 Missense_Mutation p.H70R 0.19 deleterious(0) possibly_damaging(0.855) TCGA-IB-7651-01 8 80549083 80549083 C T STMN2 Silent p.C22C 0.18 TCGA-IB-7651-01 8 81599496 81599496 G A ZNF704 Silent p.L175L 0.10 TCGA-IB-7651-01 8 8175725 8175725 G A SGK223 Missense_Mutation p.A1387V 0.20 probably_damaging(0.98) TCGA-IB-7651-01 8 8175943 8175943 G T SGK223 Silent p.I1314I 0.18 TCGA-IB-7651-01 8 81888761 81888761 G T PAG1 3'UTR 0.20 TCGA-IB-7651-01 8 81889134 81889134 G T PAG1 Missense_Mutation p.A315D 0.18 tolerated(0.07) probably_damaging(0.999) TCGA-IB-7651-01 8 82359659 82359659 T G PMP2 5'UTR 0.10 TCGA-IB-7651-01 8 82391667 82391667 C A FABP4 Missense_Mutation p.E110D 0.15 tolerated(0.46) benign(0) TCGA-IB-7651-01 8 82606167 82606167 A G SLC10A5 Silent p.G347G 0.20 TCGA-IB-7651-01 8 82606769 82606769 T C SLC10A5 Missense_Mutation p.I147V 0.18 tolerated(0.21) benign(0.003) TCGA-IB-7651-01 8 82606840 82606840 A G SLC10A5 Missense_Mutation p.V123A 0.16 deleterious(0) benign(0.197) TCGA-IB-7651-01 8 82615252 82615252 G A ZFAND1 Silent p.A196A 0.20 TCGA-IB-7651-01 8 82713702 82713702 G A SNX16 3'UTR 0.08 TCGA-IB-7651-01 8 86042165 86042165 C A LRRCC1 Silent p.I546I 0.16 TCGA-IB-7651-01 8 86042196 86042196 G A LRRCC1 Missense_Mutation p.D557N 0.08 tolerated(0.09) benign(0.149) TCGA-IB-7651-01 8 86115389 86115389 T C E2F5 Silent p.A135A 0.12 TCGA-IB-7651-01 8 86115478 86115478 C A E2F5 Missense_Mutation p.S165Y 0.19 tolerated(1) benign(0.065) TCGA-IB-7651-01 8 86121474 86121474 C A E2F5 Missense_Mutation p.P238H 0.13 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 8 86121509 86121509 A G E2F5 Missense_Mutation p.T250A 0.13 tolerated(0.76) benign(0.001) TCGA-IB-7651-01 8 86127224 86127224 C A C8orf59 Missense_Mutation p.A53S 0.11 deleterious(0.01) possibly_damaging(0.834) TCGA-IB-7651-01 8 86352068 86352068 C A CA3 Silent p.G54G 0.18 TCGA-IB-7651-01 8 8654933 8654933 G A MFHAS1 Nonsense_Mutation p.R1023* 0.17 TCGA-IB-7651-01 8 87229945 87229945 C T SLC7A13 Silent p.S311S 0.16 TCGA-IB-7651-01 8 87242497 87242497 C T SLC7A13 Missense_Mutation p.G4R 0.08 tolerated(0.42) benign(0.014) TCGA-IB-7651-01 8 87393071 87393071 A C WWP1 Missense_Mutation p.K63Q 0.17 tolerated(0.23) probably_damaging(1) TCGA-IB-7651-01 8 87487169 87487169 G T RMDN1 Missense_Mutation p.F258L 0.08 deleterious(0) possibly_damaging(0.816) TCGA-IB-7651-01 8 87549859 87549859 G T CPNE3 Missense_Mutation p.M176I 0.20 tolerated(0.22) benign(0.005) TCGA-IB-7651-01 8 8875870 8875870 T C ERI1 Silent p.L216L 0.23 TCGA-IB-7651-01 8 88885789 88885789 G T DCAF4L2 Missense_Mutation p.H137Q 0.16 tolerated(0.13) benign(0.052) TCGA-IB-7651-01 8 89054008 89054008 T G MMP16 Missense_Mutation p.Y502S 0.18 deleterious(0.02) probably_damaging(0.971) TCGA-IB-7651-01 8 8998463 8998463 G T PPP1R3B Silent p.I233I 0.18 TCGA-IB-7651-01 8 90921949 90921949 G T OSGIN2 Nonsense_Mutation p.G67* 0.11 TCGA-IB-7651-01 8 90936852 90936852 C T OSGIN2 Missense_Mutation p.L248F 0.16 tolerated(0.33) possibly_damaging(0.614) TCGA-IB-7651-01 8 91033242 91033242 G A DECR1 Missense_Mutation p.V175M 0.22 deleterious(0.03) possibly_damaging(0.828) TCGA-IB-7651-01 8 91094943 91094943 G A CALB1 5'UTR 0.20 TCGA-IB-7651-01 8 91637825 91637825 C A TMEM64 3'UTR 0.22 TCGA-IB-7651-01 8 91637980 91637980 G A TMEM64 Silent p.G354G 0.17 TCGA-IB-7651-01 8 91657382 91657382 C T TMEM64 Missense_Mutation p.R251K 0.15 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 8 91657411 91657411 T C TMEM64 Silent p.G241G 0.19 TCGA-IB-7651-01 8 92007776 92007776 C T TMEM55A 3'UTR 0.22 TCGA-IB-7651-01 8 92033488 92033488 G A TMEM55A Missense_Mutation p.A84V 0.19 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 8 92350382 92350382 T G SLC26A7 Missense_Mutation p.I267S 0.20 deleterious(0.04) benign(0.029) TCGA-IB-7651-01 8 92407386 92407386 G T SLC26A7 3'Flank 0.18 TCGA-IB-7651-01 8 93017271 93017271 A G RUNX1T1 Intron 0.17 TCGA-IB-7651-01 8 94713675 94713675 C T FAM92A1 Nonsense_Mutation p.R84* 0.20 TCGA-IB-7651-01 8 94800075 94800075 C T TMEM67 Silent p.V472V 0.15 TCGA-IB-7651-01 8 94929187 94929187 C T PDP1 5'UTR 0.14 TCGA-IB-7651-01 8 94935002 94935002 G T PDP1 Missense_Mutation p.A264S 0.20 tolerated(0.31) benign(0.372) TCGA-IB-7651-01 8 94935883 94935883 G A PDP1 Silent p.A557A 0.17 TCGA-IB-7651-01 8 95140386 95140386 A G CDH17 3'UTR 0.14 TCGA-IB-7651-01 8 95182635 95182635 A G CDH17 Silent p.N352N 0.19 TCGA-IB-7651-01 8 95189834 95189834 C A CDH17 Missense_Mutation p.R89I 0.15 deleterious(0) possibly_damaging(0.56) TCGA-IB-7651-01 8 9538260 9538260 G A TNKS Missense_Mutation p.A353T 0.16 tolerated(0.4) possibly_damaging(0.55) TCGA-IB-7651-01 8 95390544 95390544 G A RAD54B Silent p.V793V 0.17 TCGA-IB-7651-01 8 95802019 95802019 C T DPY19L4 Nonsense_Mutation p.R685* 0.13 TCGA-IB-7651-01 8 95869141 95869141 C T INTS8 Missense_Mutation p.A630V 0.18 tolerated(0.14) benign(0.01) TCGA-IB-7651-01 8 95871751 95871751 G A INTS8 Missense_Mutation p.R656H 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 8 95900214 95900214 T G CCNE2 Missense_Mutation p.N181H 0.21 tolerated(0.54) probably_damaging(0.909) TCGA-IB-7651-01 8 9599253 9599253 C A TNKS Intron 0.16 TCGA-IB-7651-01 8 9605704 9605704 G A TNKS Silent p.T938T 0.21 TCGA-IB-7651-01 8 9623249 9623249 A G TNKS Silent p.R1165R 0.14 TCGA-IB-7651-01 8 9623794 9623794 G A TNKS Missense_Mutation p.R1200Q 0.17 deleterious(0) probably_damaging(0.974) TCGA-IB-7651-01 8 9627692 9627692 C T TNKS Missense_Mutation p.P1273S 0.18 deleterious(0) probably_damaging(0.993) TCGA-IB-7651-01 8 97244142 97244142 C T UQCRB Missense_Mutation p.E40K 0.15 deleterious(0) benign(0.288) TCGA-IB-7651-01 8 97269405 97269405 C T MTERFD1 Intron 0.21 TCGA-IB-7651-01 8 97296348 97296348 C T PTDSS1 Nonsense_Mutation p.R95* 0.19 TCGA-IB-7651-01 8 98289747 98289747 G A TSPYL5 Missense_Mutation p.A109V 0.20 tolerated(0.12) benign(0.01) TCGA-IB-7651-01 8 98736954 98736954 C A MTDH 3'UTR 0.08 TCGA-IB-7651-01 8 98827618 98827618 G A LAPTM4B Missense_Mutation p.G183R 0.14 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 8 99030295 99030295 C T MATN2 Silent p.C590C 0.18 TCGA-IB-7651-01 8 99039839 99039839 A G MATN2 Missense_Mutation p.N713S 0.20 tolerated(1) benign(0.002) TCGA-IB-7651-01 8 99142303 99142303 G A POP1 Missense_Mutation p.R195K 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 8 99207043 99207043 G A NIPAL2 Silent p.L318L 0.16 TCGA-IB-7651-01 8 99440776 99440776 G A KCNS2 Missense_Mutation p.S190N 0.18 deleterious(0) benign(0.107) TCGA-IB-7651-01 8 99961621 99961621 C A OSR2 Silent p.I147I 0.03 TCGA-IB-7651-01 9 100074478 100074478 C T CCDC180 Missense_Mutation p.T159I 0.19 tolerated(0.25) benign(0.054) TCGA-IB-7651-01 9 100365039 100365039 G T TSTD2 Nonsense_Mutation p.Y421* 0.21 TCGA-IB-7651-01 9 100617275 100617275 C T FOXE1 Missense_Mutation p.A360V 0.17 deleterious(0.04) benign(0.001) TCGA-IB-7651-01 9 100617395 100617395 G A FOXE1 3'UTR 0.12 TCGA-IB-7651-01 9 100693016 100693016 C A HEMGN Missense_Mutation p.D221Y 0.18 deleterious(0) possibly_damaging(0.739) TCGA-IB-7651-01 9 100849612 100849612 G A TRIM14 3'UTR 0.19 TCGA-IB-7651-01 9 100850171 100850171 G A TRIM14 Missense_Mutation p.R304W 0.27 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 9 100961829 100961829 C T TBC1D2 Missense_Mutation p.R863H 0.17 deleterious(0) possibly_damaging(0.725) TCGA-IB-7651-01 9 100965573 100965573 G A TBC1D2 Silent p.S756S 0.15 TCGA-IB-7651-01 9 101017623 101017623 G A TBC1D2 Silent p.R67R 0.16 TCGA-IB-7651-01 9 101304292 101304292 C T GABBR2 Missense_Mutation p.D165N 0.22 tolerated(0.3) benign(0.187) TCGA-IB-7651-01 9 101340265 101340265 G A GABBR2 Silent p.S137S 0.18 TCGA-IB-7651-01 9 101518814 101518814 C T ANKS6 Silent p.T738T 0.21 TCGA-IB-7651-01 9 101536254 101536254 G A ANKS6 Missense_Mutation p.R576W 0.17 deleterious(0) possibly_damaging(0.893) TCGA-IB-7651-01 9 101536359 101536359 G A ANKS6 Nonsense_Mutation p.R541* 0.13 TCGA-IB-7651-01 9 101747863 101747863 T C COL15A1 Silent p.G39G 0.14 TCGA-IB-7651-01 9 101748190 101748190 G T COL15A1 Missense_Mutation p.E148D 0.09 deleterious(0.01) probably_damaging(0.966) TCGA-IB-7651-01 9 101782700 101782700 A G COL15A1 Silent p.G559G 0.14 TCGA-IB-7651-01 9 101904853 101904853 G A TGFBR1 Missense_Mutation p.D281N 0.08 deleterious(0.02) probably_damaging(0.98) TCGA-IB-7651-01 9 102590550 102590550 G A NR4A3 Missense_Mutation p.V87M 0.14 deleterious(0.02) benign(0.098) TCGA-IB-7651-01 9 102595604 102595604 G A NR4A3 Silent p.L385L 0.16 TCGA-IB-7651-01 9 102747327 102747327 G A ERP44 Silent p.F347F 0.19 TCGA-IB-7651-01 9 103204445 103204445 G T MSANTD3 Missense_Mutation p.E75D 0.08 tolerated(0.19) possibly_damaging(0.826) TCGA-IB-7651-01 9 103204553 103204553 C T MSANTD3 Silent p.I111I 0.23 TCGA-IB-7651-01 9 103212948 103212948 A C MSANTD3 Missense_Mutation p.R176S 0.18 deleterious_low_confidence(0) benign(0.018) TCGA-IB-7651-01 9 103312424 103312424 T C TMEFF1 Missense_Mutation p.Y253H 0.18 tolerated(0.5) benign(0.36) TCGA-IB-7651-01 9 103338887 103338887 A C TMEFF1 3'UTR 0.19 TCGA-IB-7651-01 9 104071653 104071653 T G LPPR1 Missense_Mutation p.C182W 0.14 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 9 104124866 104124866 G T BAAT Silent p.P367P 0.20 TCGA-IB-7651-01 9 104130399 104130399 T C BAAT Intron 0.18 TCGA-IB-7651-01 9 104130535 104130535 C T BAAT Missense_Mutation p.S179N 0.19 deleterious(0) possibly_damaging(0.601) TCGA-IB-7651-01 9 104170227 104170227 T C ZNF189 Silent p.D59D 0.14 TCGA-IB-7651-01 9 104170805 104170805 G T ZNF189 Missense_Mutation p.R252M 0.19 deleterious(0) probably_damaging(0.945) TCGA-IB-7651-01 9 104193076 104193076 C T ALDOB Missense_Mutation p.A32T 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-IB-7651-01 9 104238223 104238223 G A TMEM246 Silent p.L384L 0.16 TCGA-IB-7651-01 9 104303164 104303164 G A RNF20 Missense_Mutation p.E179K 0.14 tolerated(0.11) benign(0) TCGA-IB-7651-01 9 104390655 104390655 A C GRIN3A Missense_Mutation p.F794C 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 104432737 104432737 A C GRIN3A Missense_Mutation p.L653V 0.21 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 9 104449311 104449311 G T GRIN3A Missense_Mutation p.L291I 0.13 tolerated(0.08) probably_damaging(0.942) TCGA-IB-7651-01 9 105767015 105767015 A C CYLC2 Missense_Mutation p.Q73H 0.11 tolerated(0.1) possibly_damaging(0.892) TCGA-IB-7651-01 9 106864318 106864319 - T SMC2 Frame_Shift_Ins p.L240Ffs*4 0.15 TCGA-IB-7651-01 9 106875687 106875687 G T SMC2 Nonsense_Mutation p.E449* 0.16 TCGA-IB-7651-01 9 107266825 107266825 C A OR13F1 Missense_Mutation p.F94L 0.17 deleterious(0.02) probably_damaging(0.993) TCGA-IB-7651-01 9 107288998 107288998 G A OR13C4 Nonsense_Mutation p.R165* 0.15 TCGA-IB-7651-01 9 107332160 107332160 T G OR13C8 Missense_Mutation p.F238V 0.24 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 9 107360921 107360921 C T OR13C5 Missense_Mutation p.M258I 0.20 deleterious(0.01) probably_damaging(0.989) TCGA-IB-7651-01 9 107379810 107379810 G T OR13C9 Missense_Mutation p.L226I 0.17 deleterious(0.01) benign(0.036) TCGA-IB-7651-01 9 107379988 107379988 C T OR13C9 Silent p.L166L 0.13 TCGA-IB-7651-01 9 107528697 107528697 C T NIPSNAP3B Missense_Mutation p.A51V 0.16 deleterious(0.03) benign(0.009) TCGA-IB-7651-01 9 107546686 107546686 G A ABCA1 Silent p.D2232D 0.16 TCGA-IB-7651-01 9 107547688 107547688 T C ABCA1 Missense_Mutation p.T2212A 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 9 107589230 107589230 G A ABCA1 Missense_Mutation p.A779V 0.16 tolerated(0.61) benign(0.019) TCGA-IB-7651-01 9 107591298 107591298 G A ABCA1 Missense_Mutation p.R672W 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 108110647 108110647 C A SLC44A1 Missense_Mutation p.L139I 0.18 deleterious(0) possibly_damaging(0.813) TCGA-IB-7651-01 9 108136980 108136980 C T SLC44A1 Silent p.I532I 0.17 TCGA-IB-7651-01 9 108366669 108366669 C T FKTN Silent p.G181G 0.15 TCGA-IB-7651-01 9 108424910 108424910 C T TAL2 Missense_Mutation p.R45C 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 9 109686536 109686536 C T ZNF462 Missense_Mutation p.R115C 0.17 possibly_damaging(0.898) TCGA-IB-7651-01 9 109689396 109689396 G A ZNF462 Missense_Mutation p.R1068Q 0.19 probably_damaging(0.986) TCGA-IB-7651-01 9 109689673 109689673 C T ZNF462 Silent p.V1160V 0.21 TCGA-IB-7651-01 9 109734376 109734376 C A ZNF462 Missense_Mutation p.P2173H 0.08 probably_damaging(0.999) TCGA-IB-7651-01 9 109746472 109746472 C T ZNF462 Missense_Mutation p.R2280C 0.14 probably_damaging(0.935) TCGA-IB-7651-01 9 110084292 110084292 C T RAD23B Missense_Mutation p.A237V 0.19 tolerated(0.31) benign(0.168) TCGA-IB-7651-01 9 110094016 110094016 G A RAD23B 3'UTR 0.23 TCGA-IB-7651-01 9 110248208 110248208 C A KLF4 Splice_Site p.X422_splice 0.19 TCGA-IB-7651-01 9 110249902 110249902 C T KLF4 Missense_Mutation p.S258N 0.15 tolerated(0.08) probably_damaging(0.943) TCGA-IB-7651-01 9 111617062 111617062 G A ACTL7B Silent p.G383G 0.11 TCGA-IB-7651-01 9 111625138 111625138 A C ACTL7A Missense_Mutation p.N179T 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 9 111631341 111631341 A C IKBKAP 3'UTR 0.19 TCGA-IB-7651-01 9 111653624 111653624 G A IKBKAP Missense_Mutation p.L1007F 0.17 deleterious(0.02) benign(0.216) TCGA-IB-7651-01 9 111685171 111685171 G A IKBKAP Missense_Mutation p.T168I 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 111706086 111706086 T C CTNNAL1 Missense_Mutation p.D651G 0.15 tolerated(0.77) probably_damaging(0.957) TCGA-IB-7651-01 9 111761490 111761490 T G CTNNAL1 Missense_Mutation p.K63T 0.16 deleterious(0) probably_damaging(0.971) TCGA-IB-7651-01 9 111936884 111936884 C A EPB41L4B Nonsense_Mutation p.E885* 0.06 TCGA-IB-7651-01 9 111956567 111956567 G T EPB41L4B Missense_Mutation p.P719H 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IB-7651-01 9 112017853 112017853 C T EPB41L4B Silent p.T369T 0.19 TCGA-IB-7651-01 9 112705591 112705591 G A PALM2 Silent p.P374P 0.17 TCGA-IB-7651-01 9 112898709 112898709 C A PALM2-AKAP2 Nonsense_Mutation p.C295* 0.16 TCGA-IB-7651-01 9 112899046 112899046 G A PALM2-AKAP2 Missense_Mutation p.A408T 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 9 112900226 112900226 C A PALM2-AKAP2 Missense_Mutation p.A801D 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 112900703 112900703 C A PALM2-AKAP2 Missense_Mutation p.A960D 0.12 deleterious(0.04) probably_damaging(1) TCGA-IB-7651-01 9 112963456 112963456 C T C9orf152 Silent p.Q164Q 0.15 TCGA-IB-7651-01 9 113006460 113006460 C A TXN Missense_Mutation p.A99S 0.25 tolerated(0.22) benign(0.233) TCGA-IB-7651-01 9 113166795 113166795 T C SVEP1 Missense_Mutation p.T3160A 0.20 benign(0.1) TCGA-IB-7651-01 9 113173864 113173864 C T SVEP1 Missense_Mutation p.A2043T 0.13 probably_damaging(1) TCGA-IB-7651-01 9 113194818 113194818 G T SVEP1 Silent p.G1719G 0.18 TCGA-IB-7651-01 9 113276288 113276288 T C SVEP1 Missense_Mutation p.T355A 0.17 probably_damaging(0.999) TCGA-IB-7651-01 9 113312282 113312282 G A SVEP1 Nonsense_Mutation p.R212* 0.22 TCGA-IB-7651-01 9 113312321 113312321 A G SVEP1 Missense_Mutation p.S199P 0.15 probably_damaging(0.999) TCGA-IB-7651-01 9 113431158 113431158 T G MUSK 5'UTR 0.22 TCGA-IB-7651-01 9 113509922 113509922 T G MUSK Missense_Mutation p.V252G 0.04 deleterious(0) probably_damaging(0.976) TCGA-IB-7651-01 9 113538230 113538230 A C MUSK Missense_Mutation p.R449S 0.16 tolerated(0.12) benign(0.001) TCGA-IB-7651-01 9 113547872 113547872 A G MUSK Missense_Mutation p.N551S 0.14 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 9 113704156 113704156 G A LPAR1 Missense_Mutation p.T113I 0.16 deleterious(0) possibly_damaging(0.831) TCGA-IB-7651-01 9 113704229 113704229 C T LPAR1 Missense_Mutation p.A89T 0.16 deleterious(0) benign(0.19) TCGA-IB-7651-01 9 113704334 113704334 C A LPAR1 Nonsense_Mutation p.G54* 0.16 TCGA-IB-7651-01 9 114089992 114089992 C A OR2K2 Missense_Mutation p.G241V 0.16 deleterious(0.01) benign(0.135) TCGA-IB-7651-01 9 114090586 114090586 C A OR2K2 Missense_Mutation p.S43I 0.16 tolerated(0.26) benign(0.006) TCGA-IB-7651-01 9 114090685 114090685 C T OR2K2 Missense_Mutation p.S10N 0.23 tolerated(0.07) benign(0.269) TCGA-IB-7651-01 9 114134091 114134091 C T KIAA0368 Missense_Mutation p.R1694Q 0.18 deleterious(0.01) probably_damaging(0.983) TCGA-IB-7651-01 9 114140876 114140876 G A KIAA0368 Missense_Mutation p.A1491V 0.20 tolerated(0.23) probably_damaging(0.912) TCGA-IB-7651-01 9 114172458 114172458 T A KIAA0368 Missense_Mutation p.I983F 0.13 tolerated(0.7) benign(0.246) TCGA-IB-7651-01 9 114178627 114178627 A G KIAA0368 Silent p.S741S 0.18 TCGA-IB-7651-01 9 114454094 114454094 G T C9orf84 Missense_Mutation p.S1324Y 0.08 deleterious(0) possibly_damaging(0.7) TCGA-IB-7651-01 9 114500748 114500748 A C C9orf84 Missense_Mutation p.I346R 0.17 deleterious(0.04) benign(0.01) TCGA-IB-7651-01 9 114693625 114693625 C T UGCG Missense_Mutation p.S271F 0.13 deleterious(0.04) possibly_damaging(0.86) TCGA-IB-7651-01 9 114695278 114695278 C T UGCG 3'UTR 0.13 TCGA-IB-7651-01 9 114825286 114825286 A C SUSD1 Missense_Mutation p.F594C 0.22 deleterious(0.01) possibly_damaging(0.789) TCGA-IB-7651-01 9 114874056 114874056 G A SUSD1 Missense_Mutation p.T350I 0.17 deleterious(0.01) probably_damaging(0.958) TCGA-IB-7651-01 9 114982571 114982571 C T PTBP3 3'UTR 0.25 TCGA-IB-7651-01 9 115336390 115336390 G T KIAA1958 Missense_Mutation p.E10D 0.18 tolerated(0.12) possibly_damaging(0.739) TCGA-IB-7651-01 9 115421560 115421560 G A KIAA1958 Silent p.L454L 0.16 TCGA-IB-7651-01 9 115421772 115421772 C T KIAA1958 Missense_Mutation p.A525V 0.14 tolerated(0.12) benign(0.061) TCGA-IB-7651-01 9 115422407 115422407 G A KIAA1958 3'UTR 0.15 TCGA-IB-7651-01 9 115449631 115449631 G A INIP 3'UTR 0.20 TCGA-IB-7651-01 9 115652542 115652542 C T SLC46A2 Silent p.A140A 0.15 TCGA-IB-7651-01 9 115759981 115759981 G A ZNF883 RNA 0.08 TCGA-IB-7651-01 9 115928378 115928378 C T FKBP15 Missense_Mutation p.D1214N 0.15 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-IB-7651-01 9 115962165 115962165 C T FKBP15 Missense_Mutation p.A193T 0.15 deleterious(0.01) probably_damaging(0.933) TCGA-IB-7651-01 9 115965247 115965247 C T FKBP15 Silent p.E131E 0.16 TCGA-IB-7651-01 9 116079005 116079005 T G WDR31 3'UTR 0.18 TCGA-IB-7651-01 9 116094247 116094247 C A WDR31 Missense_Mutation p.R19M 0.12 tolerated_low_confidence(0.16) benign(0.003) TCGA-IB-7651-01 9 116187992 116187992 G A C9orf43 Missense_Mutation p.V338I 0.17 tolerated(0.4) benign(0.016) TCGA-IB-7651-01 9 116303828 116303828 T A RGS3 Intron 0.19 TCGA-IB-7651-01 9 116353676 116353676 C T RGS3 Silent p.L1027L 0.19 TCGA-IB-7651-01 9 116359269 116359269 C T RGS3 3'UTR 0.21 TCGA-IB-7651-01 9 116823712 116823712 C T AMBP Missense_Mutation p.R282Q 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 116856514 116856514 C T KIF12 Silent p.Q282Q 0.16 TCGA-IB-7651-01 9 117002747 117002747 C T COL27A1 Missense_Mutation p.R939C 0.22 unknown(0) TCGA-IB-7651-01 9 117052362 117052362 G A COL27A1 Missense_Mutation p.A1411T 0.21 unknown(0) TCGA-IB-7651-01 9 117069983 117069983 C A COL27A1 Silent p.S1714S 0.18 TCGA-IB-7651-01 9 117120303 117120303 G A AKNA Silent p.S879S 0.15 TCGA-IB-7651-01 9 117185786 117185786 C A DFNB31 Missense_Mutation p.E478D 0.11 deleterious(0.02) benign(0.053) TCGA-IB-7651-01 9 117405595 117405595 C A C9orf91 3'UTR 0.17 TCGA-IB-7651-01 9 117437 117437 C T FOXD4 Missense_Mutation p.R228H 0.10 tolerated(1) benign(0.001) TCGA-IB-7651-01 9 117666368 117666368 G A TNFSF8 Missense_Mutation p.T183M 0.14 deleterious(0.01) probably_damaging(0.951) TCGA-IB-7651-01 9 117666569 117666569 T C TNFSF8 Missense_Mutation p.N116S 0.20 tolerated(0.45) probably_damaging(0.999) TCGA-IB-7651-01 9 117692528 117692528 G T TNFSF8 Missense_Mutation p.A19D 0.17 deleterious(0.05) benign(0.083) TCGA-IB-7651-01 9 117826947 117826947 G A TNC Missense_Mutation p.L1156F 0.15 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 9 117827095 117827095 A C TNC Missense_Mutation p.I1106M 0.16 deleterious(0.03) benign(0.395) TCGA-IB-7651-01 9 117845074 117845074 G T TNC Missense_Mutation p.P715H 0.10 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 9 117846513 117846513 A C TNC Missense_Mutation p.I702M 0.15 deleterious(0) possibly_damaging(0.857) TCGA-IB-7651-01 9 117846662 117846662 G A TNC Missense_Mutation p.L653F 0.16 deleterious(0.01) probably_damaging(0.958) TCGA-IB-7651-01 9 117848402 117848402 G T TNC Nonsense_Mutation p.C536* 0.06 TCGA-IB-7651-01 9 117848462 117848462 G A TNC Silent p.C516C 0.17 TCGA-IB-7651-01 9 117849189 117849189 A C TNC Missense_Mutation p.F274C 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 9 118009 118009 G A FOXD4 Silent p.D37D 0.16 TCGA-IB-7651-01 9 118950319 118950319 C T PAPPA Silent p.G434G 0.13 TCGA-IB-7651-01 9 119093522 119093522 G A PAPPA Splice_Site p.X1050_splice 0.22 TCGA-IB-7651-01 9 119158838 119158838 G A PAPPA Silent p.R1609R 0.14 TCGA-IB-7651-01 9 119461183 119461183 G A TRIM32 Missense_Mutation p.A388T 0.18 deleterious(0.01) probably_damaging(0.916) TCGA-IB-7651-01 9 119461253 119461253 C T TRIM32 Missense_Mutation p.P411L 0.20 deleterious(0.01) benign(0.076) TCGA-IB-7651-01 9 119737600 119737600 G A ASTN2 Silent p.G541G 0.18 TCGA-IB-7651-01 9 119802151 119802151 C T ASTN2 Missense_Mutation p.C406Y 0.18 deleterious(0) unknown(0) TCGA-IB-7651-01 9 121929970 121929970 A T BRINP1 Missense_Mutation p.F560I 0.06 tolerated(0.29) possibly_damaging(0.879) TCGA-IB-7651-01 9 122004453 122004453 C T BRINP1 Missense_Mutation p.D151N 0.10 tolerated(0.25) probably_damaging(0.989) TCGA-IB-7651-01 9 123206003 123206003 C T CDK5RAP2 Missense_Mutation p.A1015T 0.15 tolerated(0.46) benign(0) TCGA-IB-7651-01 9 123253655 123253655 T G CDK5RAP2 Missense_Mutation p.K471T 0.21 deleterious(0.01) benign(0.403) TCGA-IB-7651-01 9 123342277 123342277 C T CDK5RAP2 5'UTR 0.14 TCGA-IB-7651-01 9 123384921 123384921 G A MEGF9 Missense_Mutation p.R306W 0.14 deleterious(0.02) probably_damaging(0.987) TCGA-IB-7651-01 9 123526768 123526768 C T FBXW2 3'UTR 0.25 TCGA-IB-7651-01 9 123538497 123538497 G A FBXW2 Silent p.S231S 0.08 TCGA-IB-7651-01 9 123751958 123751958 G A C5 Silent p.S1014S 0.21 TCGA-IB-7651-01 9 123852648 123852648 C A CNTRL Missense_Mutation p.L105I 0.08 probably_damaging(0.998) TCGA-IB-7651-01 9 123898163 123898163 G T CNTRL Missense_Mutation p.S702I 0.15 possibly_damaging(0.796) TCGA-IB-7651-01 9 123904467 123904467 A C CNTRL Missense_Mutation p.Q930H 0.19 probably_damaging(0.999) TCGA-IB-7651-01 9 123906201 123906201 A C CNTRL Missense_Mutation p.K964N 0.13 benign(0.347) TCGA-IB-7651-01 9 124081117 124081117 G A GSN Missense_Mutation p.A435T 0.21 deleterious(0) possibly_damaging(0.9) TCGA-IB-7651-01 9 124091191 124091191 C T GSN Silent p.G646G 0.05 TCGA-IB-7651-01 9 124111572 124111572 G A STOM Silent p.S117S 0.15 TCGA-IB-7651-01 9 124329419 124329419 G A DAB2IP 5'UTR 0.18 TCGA-IB-7651-01 9 124522508 124522508 C T DAB2IP Silent p.G292G 0.14 TCGA-IB-7651-01 9 124751937 124751937 C T TTLL11 Missense_Mutation p.R359H 0.17 tolerated(0.07) benign(0.254) TCGA-IB-7651-01 9 124914656 124914656 G A NDUFA8 Missense_Mutation p.A28V 0.19 deleterious(0) possibly_damaging(0.877) TCGA-IB-7651-01 9 124979498 124979498 G A LHX6 Silent p.R177R 0.18 TCGA-IB-7651-01 9 125148839 125148839 G A PTGS1 Missense_Mutation p.R375H 0.04 deleterious(0.02) possibly_damaging(0.702) TCGA-IB-7651-01 9 125273896 125273896 C A OR1J2 Silent p.V272V 0.15 TCGA-IB-7651-01 9 125316257 125316257 G A OR1N2 Missense_Mutation p.G270E 0.19 deleterious(0) probably_damaging(0.971) TCGA-IB-7651-01 9 125329904 125329904 G T OR1L8 Missense_Mutation p.L285I 0.15 deleterious(0) possibly_damaging(0.786) TCGA-IB-7651-01 9 125377105 125377105 T G OR1Q1 Missense_Mutation p.V30G 0.16 deleterious(0.03) benign(0.188) TCGA-IB-7651-01 9 125423951 125423951 G A OR1L1 5'Flank 0.10 TCGA-IB-7651-01 9 125424359 125424359 G A OR1L1 Missense_Mutation p.R122H 0.19 deleterious(0.03) benign(0.246) TCGA-IB-7651-01 9 125486321 125486321 T A OR1L4 Missense_Mutation p.L18H 0.19 deleterious(0) possibly_damaging(0.75) TCGA-IB-7651-01 9 125486692 125486692 T C OR1L4 Missense_Mutation p.C142R 0.18 deleterious(0) benign(0.019) TCGA-IB-7651-01 9 125512172 125512172 C A OR1L6 Missense_Mutation p.L16M 0.04 deleterious(0.03) probably_damaging(0.999) TCGA-IB-7651-01 9 125512484 125512484 G A OR1L6 Missense_Mutation p.A120T 0.15 deleterious(0) probably_damaging(0.911) TCGA-IB-7651-01 9 125512690 125512690 C A OR1L6 Silent p.L188L 0.13 TCGA-IB-7651-01 9 125551396 125551396 C T OR5C1 Missense_Mutation p.P62L 0.18 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 9 125563013 125563013 C T OR1K1 Silent p.G204G 0.20 TCGA-IB-7651-01 9 125585390 125585390 G T PDCL Missense_Mutation p.L87M 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 125627791 125627791 G A RC3H2 Missense_Mutation p.P491S 0.15 tolerated(0.2) probably_damaging(0.979) TCGA-IB-7651-01 9 125642526 125642526 G A RC3H2 Intron 0.15 TCGA-IB-7651-01 9 125652725 125652725 C A RC3H2 Missense_Mutation p.R150I 0.22 deleterious(0) probably_damaging(0.962) TCGA-IB-7651-01 9 125659639 125659639 A G RC3H2 Silent p.C50C 0.11 TCGA-IB-7651-01 9 125659725 125659725 C T RC3H2 Missense_Mutation p.D22N 0.13 tolerated(0.12) probably_damaging(0.971) TCGA-IB-7651-01 9 125681859 125681859 A G ZBTB26 Missense_Mutation p.C119R 0.08 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 125746835 125746835 C T RABGAP1 Silent p.D74D 0.13 TCGA-IB-7651-01 9 125797524 125797524 G A GPR21 Missense_Mutation p.E227K 0.19 tolerated(0.08) benign(0.008) TCGA-IB-7651-01 9 125863974 125863974 C A RABGAP1 Missense_Mutation p.L1007M 0.18 tolerated(0.08) probably_damaging(0.994) TCGA-IB-7651-01 9 125946420 125946420 C A STRBP 5'UTR 0.13 TCGA-IB-7651-01 9 126132468 126132468 G A CRB2 Missense_Mutation p.G379D 0.19 tolerated(0.94) probably_damaging(0.982) TCGA-IB-7651-01 9 126132762 126132762 G T CRB2 Missense_Mutation p.R477L 0.18 tolerated(0.09) possibly_damaging(0.569) TCGA-IB-7651-01 9 126132862 126132862 G A CRB2 Silent p.P510P 0.17 TCGA-IB-7651-01 9 126143656 126143656 G A DENND1A 3'UTR 0.17 TCGA-IB-7651-01 9 126202642 126202642 T C DENND1A Silent p.G495G 0.16 TCGA-IB-7651-01 9 127115792 127115792 G A PSMB7 3'UTR 0.20 TCGA-IB-7651-01 9 127177699 127177699 C T PSMB7 Silent p.A2A 0.22 TCGA-IB-7651-01 9 127262888 127262888 G A NR5A1 Silent p.G117G 0.20 TCGA-IB-7651-01 9 127306128 127306128 C A NR6A1 Nonsense_Mutation p.E132* 0.18 TCGA-IB-7651-01 9 127549269 127549269 G T OLFML2A Missense_Mutation p.D36Y 0.17 deleterious(0) probably_damaging(0.966) TCGA-IB-7651-01 9 127572492 127572492 C A OLFML2A Missense_Mutation p.A587D 0.17 deleterious(0) possibly_damaging(0.887) TCGA-IB-7651-01 9 127572610 127572610 C T OLFML2A Silent p.I626I 0.15 TCGA-IB-7651-01 9 127620235 127620235 G A RPL35 Missense_Mutation p.R112W 0.16 tolerated(0.21) benign(0.001) TCGA-IB-7651-01 9 127639172 127639172 G A ARPC5L Missense_Mutation p.G139R 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 127701093 127701093 G A GOLGA1 5'UTR 0.17 TCGA-IB-7651-01 9 127791943 127791943 C T SCAI Nonsense_Mutation p.W125* 0.18 TCGA-IB-7651-01 9 127912091 127912091 T G PPP6C Missense_Mutation p.N297T 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 9 127990330 127990330 T C RABEPK Missense_Mutation p.I223T 0.07 deleterious(0.03) benign(0.084) TCGA-IB-7651-01 9 128000926 128000926 C T HSPA5 Missense_Mutation p.A393T 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-IB-7651-01 9 128001387 128001387 C A HSPA5 Missense_Mutation p.D277Y 0.15 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-IB-7651-01 9 128001525 128001525 C T HSPA5 Missense_Mutation p.D231N 0.10 deleterious_low_confidence(0.03) possibly_damaging(0.615) TCGA-IB-7651-01 9 128070277 128070277 G A GAPVD1 Intron 0.32 TCGA-IB-7651-01 9 128099772 128099772 C T GAPVD1 Nonsense_Mutation p.R954* 0.16 TCGA-IB-7651-01 9 128099865 128099865 G T GAPVD1 Nonsense_Mutation p.G985* 0.15 TCGA-IB-7651-01 9 128125011 128125011 G A GAPVD1 Missense_Mutation p.D1484N 0.19 tolerated(0.09) possibly_damaging(0.777) TCGA-IB-7651-01 9 128125136 128125136 G T GAPVD1 3'UTR 0.10 TCGA-IB-7651-01 9 12821638 12821638 A G LURAP1L Missense_Mutation p.D189G 0.21 deleterious(0) probably_damaging(0.982) TCGA-IB-7651-01 9 128723010 128723010 T A PBX3 Silent p.I297I 0.24 TCGA-IB-7651-01 9 128725346 128725346 G A PBX3 Missense_Mutation p.G393E 0.11 tolerated(0.22) benign(0.06) TCGA-IB-7651-01 9 129154412 129154412 G A MVB12B Silent p.A159A 0.19 TCGA-IB-7651-01 9 129455510 129455510 C T LMX1B Missense_Mutation p.R217W 0.08 deleterious(0) probably_damaging(0.931) TCGA-IB-7651-01 9 129458638 129458638 C T LMX1B Missense_Mutation p.L377F 0.21 deleterious(0.01) possibly_damaging(0.847) TCGA-IB-7651-01 9 129458652 129458652 C T LMX1B Silent p.D381D 0.03 TCGA-IB-7651-01 9 129458858 129458858 G A LMX1B 3'UTR 0.10 TCGA-IB-7651-01 9 129642452 129642452 C T ZBTB34 Silent p.D254D 0.14 TCGA-IB-7651-01 9 129831557 129831557 A C RALGPS1 Missense_Mutation p.M178L 0.22 tolerated(0.59) benign(0.005) TCGA-IB-7651-01 9 129851051 129851051 C T ANGPTL2 3'UTR 0.39 TCGA-IB-7651-01 9 129958828 129958828 C T RALGPS1 Silent p.D371D 0.17 TCGA-IB-7651-01 9 129975289 129975289 G A RALGPS1 Missense_Mutation p.E505K 0.12 tolerated(0.69) benign(0.158) TCGA-IB-7651-01 9 130206888 130206888 G T ZNF79 Missense_Mutation p.K303N 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 9 130230041 130230041 C A LRSAM1 Missense_Mutation p.A184D 0.29 tolerated(0.24) benign(0.06) TCGA-IB-7651-01 9 130251727 130251727 C T LRSAM1 Missense_Mutation p.A451V 0.15 tolerated(0.06) benign(0.002) TCGA-IB-7651-01 9 130251746 130251746 C T LRSAM1 Silent p.F457F 0.15 TCGA-IB-7651-01 9 130269379 130269379 C T FAM129B Silent p.R662R 0.13 TCGA-IB-7651-01 9 130269380 130269380 C T FAM129B Missense_Mutation p.R662Q 0.13 tolerated(1) benign(0.007) TCGA-IB-7651-01 9 130269465 130269465 G A FAM129B Missense_Mutation p.P634S 0.17 deleterious(0.04) probably_damaging(1) TCGA-IB-7651-01 9 130270389 130270389 C T FAM129B Missense_Mutation p.A509T 0.15 deleterious(0.04) benign(0.109) TCGA-IB-7651-01 9 130270429 130270429 C T FAM129B Silent p.A495A 0.13 TCGA-IB-7651-01 9 130425614 130425614 C T STXBP1 Missense_Mutation p.P187L 0.19 deleterious(0.02) benign(0.035) TCGA-IB-7651-01 9 130430387 130430387 C T STXBP1 Missense_Mutation p.R275W 0.15 deleterious(0) possibly_damaging(0.832) TCGA-IB-7651-01 9 130474155 130474155 C T C9orf117 Silent p.A304A 0.24 TCGA-IB-7651-01 9 130476368 130476368 G A PTRH1 3'UTR 0.22 TCGA-IB-7651-01 9 130477948 130477948 C A PTRH1 5'UTR 0.18 TCGA-IB-7651-01 9 130477960 130477960 C T PTRH1 5'UTR 0.17 TCGA-IB-7651-01 9 130479252 130479252 C A TTC16 Missense_Mutation p.P50T 0.20 tolerated(0.08) benign(0.299) TCGA-IB-7651-01 9 130485513 130485513 C T TTC16 Missense_Mutation p.A258V 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 130501057 130501057 G T SH2D3C Missense_Mutation p.L851M 0.20 deleterious(0) possibly_damaging(0.853) TCGA-IB-7651-01 9 130511771 130511771 C T SH2D3C Silent p.E286E 0.18 TCGA-IB-7651-01 9 130551610 130551610 C T CDK9 Missense_Mutation p.R303C 0.24 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 9 130575653 130575653 G A FPGS Missense_Mutation p.A512T 0.19 tolerated(1) benign(0.001) TCGA-IB-7651-01 9 130575822 130575822 C T FPGS Missense_Mutation p.T568I 0.18 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 9 130581937 130581937 C T ENG Silent p.A425A 0.27 TCGA-IB-7651-01 9 130587516 130587516 C T ENG Silent p.Q270Q 0.16 TCGA-IB-7651-01 9 130635041 130635041 G A AK1 Silent p.S45S 0.18 TCGA-IB-7651-01 9 130635710 130635710 C T AK1 Intron 0.17 TCGA-IB-7651-01 9 130653219 130653219 C T ST6GALNAC6 Missense_Mutation p.R134H 0.08 probably_damaging(0.971) TCGA-IB-7651-01 9 130656830 130656830 C T ST6GALNAC6 Nonsense_Mutation p.W86* 0.16 TCGA-IB-7651-01 9 130674853 130674853 C T ST6GALNAC4 Missense_Mutation p.R102H 0.19 probably_damaging(1) TCGA-IB-7651-01 9 130687515 130687515 C T PIP5KL1 Missense_Mutation p.R263H 0.15 tolerated(0.15) benign(0.049) TCGA-IB-7651-01 9 130707059 130707059 C T FAM102A Missense_Mutation p.E346K 0.15 deleterious(0.02) probably_damaging(0.997) TCGA-IB-7651-01 9 130829260 130829260 G T NAIF1 Missense_Mutation p.L41M 0.05 tolerated(0.22) probably_damaging(0.998) TCGA-IB-7651-01 9 130829277 130829277 A G NAIF1 Missense_Mutation p.F35S 0.15 deleterious(0.03) probably_damaging(0.995) TCGA-IB-7651-01 9 130865959 130865959 G A SLC25A25 Splice_Site p.X197_splice 0.17 TCGA-IB-7651-01 9 130914671 130914671 C A LCN2 Intron 0.16 TCGA-IB-7651-01 9 130942771 130942771 G A CIZ1 Silent p.I238I 0.16 TCGA-IB-7651-01 9 130947959 130947959 G T CIZ1 Missense_Mutation p.P152H 0.16 deleterious(0) probably_damaging(0.919) TCGA-IB-7651-01 9 130984801 130984801 G A DNM1 Missense_Mutation p.D352N 0.14 tolerated(0.24) benign(0.198) TCGA-IB-7651-01 9 131008740 131008740 T C DNM1 Missense_Mutation p.M580T 0.20 deleterious(0.02) possibly_damaging(0.491) TCGA-IB-7651-01 9 131022956 131022956 C A GOLGA2 Missense_Mutation p.D489Y 0.21 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 9 131038624 131038624 A C SWI5 Missense_Mutation p.D67A 0.18 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-IB-7651-01 9 131083973 131083973 C T TRUB2 Missense_Mutation p.R49H 0.19 tolerated(0.18) benign(0.02) TCGA-IB-7651-01 9 131107479 131107479 C T SLC27A4 Silent p.C69C 0.13 TCGA-IB-7651-01 9 131107824 131107824 C A SLC27A4 Silent p.A184A 0.17 TCGA-IB-7651-01 9 131110845 131110845 G A SLC27A4 Missense_Mutation p.S193N 0.19 tolerated(0.26) benign(0.008) TCGA-IB-7651-01 9 131151923 131151923 G A URM1 3'UTR 0.23 TCGA-IB-7651-01 9 131198036 131198036 G A CERCAM Missense_Mutation p.S547N 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 9 131222946 131222946 G A ODF2 Intron 0.23 TCGA-IB-7651-01 9 131243904 131243904 C T ODF2 Silent p.L297L 0.12 TCGA-IB-7651-01 9 13125244 13125244 G T MPDZ Missense_Mutation p.S1593Y 0.17 deleterious(0.01) possibly_damaging(0.866) TCGA-IB-7651-01 9 131254790 131254790 G A ODF2 Missense_Mutation p.G541E 0.16 deleterious(0.02) benign(0.046) TCGA-IB-7651-01 9 131262527 131262527 C A ODF2 Missense_Mutation p.P828H 0.13 deleterious_low_confidence(0.01) probably_damaging(0.964) TCGA-IB-7651-01 9 131262608 131262608 C A ODF2 3'UTR 0.15 TCGA-IB-7651-01 9 131277836 131277836 C A GLE1 Missense_Mutation p.S117Y 0.16 tolerated(0.16) benign(0.009) TCGA-IB-7651-01 9 131365846 131365846 G A SPTAN1 Missense_Mutation p.V1202M 0.17 tolerated_low_confidence(0.11) possibly_damaging(0.813) TCGA-IB-7651-01 9 131397201 131397201 C A WDR34 Splice_Site p.X328_splice 0.19 TCGA-IB-7651-01 9 131455036 131455036 A C SET Missense_Mutation p.I137L 0.13 tolerated(0.06) possibly_damaging(0.868) TCGA-IB-7651-01 9 131467678 131467678 C T PKN3 Missense_Mutation p.R41W 0.17 deleterious(0) probably_damaging(0.93) TCGA-IB-7651-01 9 131482694 131482694 C A PKN3 Missense_Mutation p.L827I 0.15 deleterious(0.02) probably_damaging(0.996) TCGA-IB-7651-01 9 131495800 131495800 C A ZER1 Missense_Mutation p.K716N 0.21 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 9 131591055 131591055 C T C9orf114 Missense_Mutation p.R56H 0.16 tolerated(0.1) benign(0.067) TCGA-IB-7651-01 9 131591124 131591124 T C C9orf114 Missense_Mutation p.K33R 0.18 tolerated(0.51) possibly_damaging(0.453) TCGA-IB-7651-01 9 131669896 131669896 G A LRRC8A Silent p.S151S 0.14 TCGA-IB-7651-01 9 131708616 131708616 A G DOLK Missense_Mutation p.S323P 0.20 tolerated(0.34) benign(0.147) TCGA-IB-7651-01 9 131709434 131709434 G A DOLK Missense_Mutation p.A50V 0.22 tolerated_low_confidence(0.16) benign(0.047) TCGA-IB-7651-01 9 131730896 131730896 C T NUP188 Missense_Mutation p.L233F 0.18 deleterious(0.01) probably_damaging(0.954) TCGA-IB-7651-01 9 131749134 131749134 C T NUP188 Silent p.H748H 0.18 TCGA-IB-7651-01 9 131755935 131755935 G A NUP188 Silent p.Q993Q 0.19 TCGA-IB-7651-01 9 131755939 131755939 C T NUP188 Missense_Mutation p.R995W 0.18 tolerated(0.08) probably_damaging(0.994) TCGA-IB-7651-01 9 131761996 131761996 G A NUP188 Missense_Mutation p.S1252N 0.17 tolerated(0.44) benign(0.003) TCGA-IB-7651-01 9 131763821 131763821 G A NUP188 Missense_Mutation p.G1286D 0.12 tolerated(0.3) probably_damaging(0.921) TCGA-IB-7651-01 9 131830525 131830525 G A FAM73B Missense_Mutation p.D440N 0.15 deleterious(0.03) probably_damaging(1) TCGA-IB-7651-01 9 131873284 131873284 T C PPP2R4 5'Flank 0.14 TCGA-IB-7651-01 9 13190142 13190142 C A MPDZ Nonsense_Mutation p.G709* 0.09 TCGA-IB-7651-01 9 131940297 131940297 C A IER5L Missense_Mutation p.S12I 0.22 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-IB-7651-01 9 132375512 132375512 C A C9orf50 Missense_Mutation p.Q354H 0.16 deleterious(0.03) possibly_damaging(0.891) TCGA-IB-7651-01 9 132375527 132375527 G A C9orf50 Silent p.S349S 0.18 TCGA-IB-7651-01 9 132394965 132394965 G A NTMT1 5'UTR 0.15 TCGA-IB-7651-01 9 132395137 132395137 T G NTMT1 Missense_Mutation p.F52C 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 132397705 132397705 G A NTMT1 Missense_Mutation p.D212N 0.18 deleterious(0.04) benign(0.028) TCGA-IB-7651-01 9 132397821 132397821 C T NTMT1 3'UTR 0.15 TCGA-IB-7651-01 9 132590482 132590482 G T C9orf78 Missense_Mutation p.D276E 0.15 deleterious(0) probably_damaging(0.963) TCGA-IB-7651-01 9 132642473 132642473 G A USP20 Missense_Mutation p.R889H 0.21 tolerated(0.08) possibly_damaging(0.476) TCGA-IB-7651-01 9 132848734 132848734 T C GPR107 Silent p.N200N 0.17 TCGA-IB-7651-01 9 133501820 133501820 G A FUBP3 Missense_Mutation p.G349R 0.19 tolerated(0.12) possibly_damaging(0.482) TCGA-IB-7651-01 9 133577479 133577479 G A EXOSC2 Intron 0.16 TCGA-IB-7651-01 9 133730325 133730325 C T ABL1 Missense_Mutation p.P150S 0.05 deleterious(0.03) probably_damaging(0.998) TCGA-IB-7651-01 9 133755491 133755491 C A ABL1 Missense_Mutation p.A506D 0.15 tolerated(0.06) probably_damaging(0.999) TCGA-IB-7651-01 9 133759474 133759474 G C ABL1 Missense_Mutation p.L618F 0.08 tolerated_low_confidence(0.82) probably_damaging(0.997) TCGA-IB-7651-01 9 133760790 133760790 C T ABL1 Missense_Mutation p.A1057V 0.18 tolerated_low_confidence(0.39) probably_damaging(0.997) TCGA-IB-7651-01 9 133761098 133761098 C T ABL1 3'Flank 0.10 TCGA-IB-7651-01 9 133779547 133779547 G T FIBCD1 Silent p.S430S 0.20 TCGA-IB-7651-01 9 133928274 133928274 C - LAMC3 Frame_Shift_Del p.F623Sfs*10 0.09 TCGA-IB-7651-01 9 133928326 133928326 G A LAMC3 Missense_Mutation p.R638H 0.21 deleterious(0.05) benign(0.015) TCGA-IB-7651-01 9 133961019 133961019 C T LAMC3 Missense_Mutation p.A1380V 0.13 tolerated(0.05) benign(0.035) TCGA-IB-7651-01 9 134021520 134021520 A G NUP214 Missense_Mutation p.T592A 0.10 benign(0.388) TCGA-IB-7651-01 9 134073818 134073818 C A NUP214 Missense_Mutation p.A1646D 0.19 benign(0.01) TCGA-IB-7651-01 9 134074085 134074085 C T NUP214 Missense_Mutation p.S1735L 0.17 benign(0.008) TCGA-IB-7651-01 9 134090667 134090667 T C NUP214 Silent p.S1887S 0.23 TCGA-IB-7651-01 9 134103652 134103652 C A NUP214 Missense_Mutation p.P2003H 0.14 probably_damaging(0.95) TCGA-IB-7651-01 9 134151321 134151321 C A FAM78A Missense_Mutation p.K82N 0.18 tolerated(0.37) benign(0.022) TCGA-IB-7651-01 9 134151457 134151457 C T FAM78A Missense_Mutation p.G37E 0.18 tolerated(0.37) benign(0.037) TCGA-IB-7651-01 9 134319600 134319600 C A PRRC2B Silent p.S166S 0.19 TCGA-IB-7651-01 9 134349022 134349022 C T PRRC2B Silent p.S745S 0.16 TCGA-IB-7651-01 9 134363345 134363345 G T PRRC2B Missense_Mutation p.Q2029H 0.19 deleterious(0.01) possibly_damaging(0.806) TCGA-IB-7651-01 9 134366949 134366949 C T PRRC2B Silent p.V2121V 0.14 TCGA-IB-7651-01 9 134612810 134612810 G A RAPGEF1 5'UTR 0.13 TCGA-IB-7651-01 9 135073361 135073361 C T NTNG2 Silent p.P74P 0.22 TCGA-IB-7651-01 9 135073579 135073579 C T NTNG2 Missense_Mutation p.T147M 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-IB-7651-01 9 135073991 135073991 C T NTNG2 Silent p.I284I 0.22 TCGA-IB-7651-01 9 135102389 135102389 C T NTNG2 Silent p.P337P 0.09 TCGA-IB-7651-01 9 135105980 135105980 G A NTNG2 Missense_Mutation p.G351D 0.14 tolerated(0.1) benign(0.212) TCGA-IB-7651-01 9 135114495 135114495 C T NTNG2 Silent p.C353C 0.15 TCGA-IB-7651-01 9 135117335 135117335 G A NTNG2 Missense_Mutation p.C477Y 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 135139642 135139642 T G SETX Missense_Mutation p.K2673T 0.21 deleterious_low_confidence(0) possibly_damaging(0.701) TCGA-IB-7651-01 9 135203375 135203375 T G SETX Silent p.R1204R 0.18 TCGA-IB-7651-01 9 135203494 135203494 C T SETX Missense_Mutation p.R1164Q 0.18 tolerated(0.57) benign(0.007) TCGA-IB-7651-01 9 135277105 135277105 C T TTF1 Silent p.G368G 0.18 TCGA-IB-7651-01 9 135277186 135277186 G T TTF1 Missense_Mutation p.H341Q 0.15 tolerated_low_confidence(0.59) benign(0.021) TCGA-IB-7651-01 9 135374874 135374874 G A C9orf171 Silent p.E173E 0.17 TCGA-IB-7651-01 9 135778026 135778026 C T TSC1 Missense_Mutation p.R786Q 0.21 tolerated(0.17) benign(0.006) TCGA-IB-7651-01 9 135863798 135863798 C A GFI1B Missense_Mutation p.D151E 0.16 tolerated(0.07) benign(0.439) TCGA-IB-7651-01 9 135942552 135942552 C T CEL Silent p.A288A 0.08 TCGA-IB-7651-01 9 135944086 135944086 T G CEL Missense_Mutation p.V311G 0.10 tolerated(0.13) benign(0.061) TCGA-IB-7651-01 9 135947156 135947156 C T CEL 3'UTR 0.11 TCGA-IB-7651-01 9 135977147 135977147 G T RALGDS Missense_Mutation p.F738L 0.11 tolerated(0.89) unknown(0) TCGA-IB-7651-01 9 136030569 136030569 C T GBGT1 Missense_Mutation p.G119R 0.13 tolerated(0.11) benign(0.142) TCGA-IB-7651-01 9 136132863 136132863 C T RP11-430N14.4 5'Flank 0.17 TCGA-IB-7651-01 9 136218201 136218201 C T RPL7A Missense_Mutation p.L261F 0.20 deleterious(0.02) benign(0.221) TCGA-IB-7651-01 9 136231830 136231830 C T SURF4 Silent p.A143A 0.18 TCGA-IB-7651-01 9 136260729 136260729 C T C9orf96 Silent p.G235G 0.14 TCGA-IB-7651-01 9 136324323 136324323 C T ADAMTS13 3'UTR 0.23 TCGA-IB-7651-01 9 136337180 136337180 G A SLC2A6 Missense_Mutation p.S496F 0.22 deleterious(0) possibly_damaging(0.866) TCGA-IB-7651-01 9 136337292 136337292 A C SLC2A6 Missense_Mutation p.F459V 0.21 deleterious(0.04) benign(0.02) TCGA-IB-7651-01 9 136531866 136531866 G A SARDH Silent p.S874S 0.13 TCGA-IB-7651-01 9 136573457 136573457 G A SARDH Silent p.H474H 0.12 TCGA-IB-7651-01 9 136594899 136594899 G A SARDH Silent p.I301I 0.20 TCGA-IB-7651-01 9 136901300 136901300 T C BRD3 Missense_Mutation p.H597R 0.16 deleterious(0.02) possibly_damaging(0.696) TCGA-IB-7651-01 9 136907020 136907020 C T BRD3 Silent p.P423P 0.18 TCGA-IB-7651-01 9 136913346 136913346 G A BRD3 Silent p.C315C 0.13 TCGA-IB-7651-01 9 136917482 136917482 G A BRD3 Silent p.S99S 0.10 TCGA-IB-7651-01 9 136918578 136918578 C T BRD3 Missense_Mutation p.A8T 0.17 tolerated_low_confidence(0.14) benign(0.004) TCGA-IB-7651-01 9 137591908 137591908 C T COL5A1 Missense_Mutation p.T144M 0.19 possibly_damaging(0.777) TCGA-IB-7651-01 9 137600400 137600400 G A COL5A1 Intron 0.13 TCGA-IB-7651-01 9 137620520 137620520 C T COL5A1 Missense_Mutation p.T264M 0.16 probably_damaging(0.932) TCGA-IB-7651-01 9 137630615 137630615 C T COL5A1 Silent p.T485T 0.06 TCGA-IB-7651-01 9 137630649 137630649 G T COL5A1 Nonsense_Mutation p.E497* 0.14 TCGA-IB-7651-01 9 137653790 137653790 G A COL5A1 Missense_Mutation p.G652D 0.18 probably_damaging(0.994) TCGA-IB-7651-01 9 137653805 137653805 C T COL5A1 Missense_Mutation p.P657L 0.07 probably_damaging(0.988) TCGA-IB-7651-01 9 137671958 137671958 G A COL5A1 Missense_Mutation p.G799D 0.18 unknown(0) TCGA-IB-7651-01 9 137703363 137703363 G A COL5A1 Missense_Mutation p.R1203Q 0.20 unknown(0) TCGA-IB-7651-01 9 137710721 137710721 G T COL5A1 Missense_Mutation p.G1456C 0.16 unknown(0) TCGA-IB-7651-01 9 137715277 137715277 A G COL5A1 Missense_Mutation p.K1554E 0.16 unknown(0) TCGA-IB-7651-01 9 137727028 137727028 G A COL5A1 Missense_Mutation p.R1783H 0.13 unknown(0) TCGA-IB-7651-01 9 137777195 137777195 G A FCN2 Missense_Mutation p.D138N 0.15 deleterious(0.02) benign(0.267) TCGA-IB-7651-01 9 137801699 137801699 G A FCN1 Missense_Mutation p.A309V 0.20 deleterious(0.01) benign(0.029) TCGA-IB-7651-01 9 137804960 137804960 G A FCN1 Missense_Mutation p.R124W 0.18 deleterious(0) possibly_damaging(0.882) TCGA-IB-7651-01 9 137990133 137990133 C T OLFM1 Missense_Mutation p.A135V 0.11 tolerated(0.14) probably_damaging(0.923) TCGA-IB-7651-01 9 137998692 137998692 C T OLFM1 Silent p.G240G 0.15 TCGA-IB-7651-01 9 138377010 138377010 C T PPP1R26 Silent p.S218S 0.15 TCGA-IB-7651-01 9 138377508 138377508 C T PPP1R26 Silent p.A384A 0.18 TCGA-IB-7651-01 9 138379085 138379085 G T PPP1R26 Missense_Mutation p.S910I 0.22 deleterious(0.01) benign(0.148) TCGA-IB-7651-01 9 138379635 138379635 C A PPP1R26 Silent p.V1093V 0.13 TCGA-IB-7651-01 9 138392846 138392846 G A MRPS2 Missense_Mutation p.A16T 0.23 tolerated_low_confidence(0.57) benign(0.005) TCGA-IB-7651-01 9 138395463 138395463 C T MRPS2 Silent p.L125L 0.12 TCGA-IB-7651-01 9 138395608 138395608 G A MRPS2 Missense_Mutation p.G174S 0.17 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 9 138440528 138440528 G A OBP2A Intron 0.15 TCGA-IB-7651-01 9 138516029 138516029 C T GLT6D1 Missense_Mutation p.G249R 0.17 deleterious(0.03) probably_damaging(0.917) TCGA-IB-7651-01 9 138517963 138517963 T C GLT6D1 Missense_Mutation p.Y70C 0.15 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 9 138557549 138557549 C T LCN9 Silent p.C142C 0.19 TCGA-IB-7651-01 9 138586218 138586218 C T SOHLH1 Intron 0.13 TCGA-IB-7651-01 9 138650335 138650335 C A KCNT1 Missense_Mutation p.L279M 0.20 deleterious(0.01) possibly_damaging(0.803) TCGA-IB-7651-01 9 138669337 138669337 G A KCNT1 Missense_Mutation p.V835M 0.18 deleterious(0.01) possibly_damaging(0.593) TCGA-IB-7651-01 9 138714511 138714511 C T CAMSAP1 Missense_Mutation p.E666K 0.20 tolerated(0.17) benign(0.148) TCGA-IB-7651-01 9 138714825 138714825 C A CAMSAP1 Missense_Mutation p.R561M 0.14 tolerated(0.07) benign(0.375) TCGA-IB-7651-01 9 138905137 138905137 G A NACC2 Missense_Mutation p.T388M 0.18 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 9 139008678 139008678 C T C9orf69 Silent p.A23A 0.12 TCGA-IB-7651-01 9 139090800 139090800 C T LHX3 Missense_Mutation p.R192H 0.18 deleterious(0) probably_damaging(0.984) TCGA-IB-7651-01 9 139091657 139091657 C A LHX3 Missense_Mutation p.Q112H 0.18 deleterious(0.02) benign(0.268) TCGA-IB-7651-01 9 139100954 139100954 C T QSOX2 Missense_Mutation p.A573T 0.17 tolerated(0.29) benign(0.121) TCGA-IB-7651-01 9 139229123 139229123 G A GPSM1 Silent p.A96A 0.13 TCGA-IB-7651-01 9 139233060 139233060 G A GPSM1 Silent p.A289A 0.18 TCGA-IB-7651-01 9 139243186 139243186 G A GPSM1 Silent p.E415E 0.18 TCGA-IB-7651-01 9 139261731 139261731 T C CARD9 Intron 0.23 TCGA-IB-7651-01 9 139261827 139261827 C T CARD9 Intron 0.30 TCGA-IB-7651-01 9 139262245 139262245 G A CARD9 Silent p.H371H 0.23 TCGA-IB-7651-01 9 139264220 139264220 G A CARD9 Silent p.V353V 0.17 TCGA-IB-7651-01 9 139265005 139265005 G T CARD9 Missense_Mutation p.A259D 0.15 deleterious(0.01) possibly_damaging(0.594) TCGA-IB-7651-01 9 139283031 139283031 C T SNAPC4 Missense_Mutation p.A330T 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-IB-7651-01 9 139286432 139286432 C T SNAPC4 Missense_Mutation p.G313S 0.13 deleterious(0.04) possibly_damaging(0.655) TCGA-IB-7651-01 9 139309012 139309012 A G PMPCA Missense_Mutation p.T149A 0.19 tolerated(0.11) benign(0.142) TCGA-IB-7651-01 9 139325493 139325493 C T INPP5E Silent p.T542T 0.19 TCGA-IB-7651-01 9 139333311 139333311 G A INPP5E Silent p.S187S 0.14 TCGA-IB-7651-01 9 139341761 139341761 G A SEC16A Silent p.S2205S 0.09 TCGA-IB-7651-01 9 139357393 139357393 C T SEC16A Silent p.S1613S 0.18 TCGA-IB-7651-01 9 139368891 139368891 C A SEC16A Missense_Mutation p.Q1059H 0.21 tolerated(0.07) possibly_damaging(0.655) TCGA-IB-7651-01 9 139371010 139371010 G T SEC16A Missense_Mutation p.A353D 0.20 tolerated(0.08) possibly_damaging(0.663) TCGA-IB-7651-01 9 139391890 139391890 C T NOTCH1 Missense_Mutation p.A2101T 0.19 deleterious(0) probably_damaging(0.967) TCGA-IB-7651-01 9 139395286 139395286 C T NOTCH1 Silent p.P1884P 0.14 TCGA-IB-7651-01 9 139397682 139397682 C T NOTCH1 Missense_Mutation p.A1707T 0.18 deleterious(0.02) probably_damaging(0.977) TCGA-IB-7651-01 9 139405693 139405693 C T NOTCH1 Missense_Mutation p.C833Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 9 139410085 139410085 C T NOTCH1 Missense_Mutation p.A585T 0.13 tolerated(0.06) probably_damaging(0.939) TCGA-IB-7651-01 9 139412240 139412240 C A NOTCH1 Missense_Mutation p.D469Y 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 139563096 139563096 C T EGFL7 Silent p.C56C 0.16 TCGA-IB-7651-01 9 139564693 139564693 G A EGFL7 Missense_Mutation p.C161Y 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 139617866 139617866 G A FAM69B Silent p.K312K 0.14 TCGA-IB-7651-01 9 139650829 139650829 G T LCN8 Intron 0.19 TCGA-IB-7651-01 9 139651524 139651524 C T LCN8 Missense_Mutation p.G41R 0.23 deleterious(0.04) benign(0.132) TCGA-IB-7651-01 9 139700867 139700867 G T CCDC183 Intron 0.22 TCGA-IB-7651-01 9 139740881 139740881 G A C9orf172 Missense_Mutation p.R672H 0.22 deleterious(0) benign(0.057) TCGA-IB-7651-01 9 139743961 139743961 G A PHPT1 Missense_Mutation p.V27I 0.18 tolerated(0.07) benign(0.364) TCGA-IB-7651-01 9 139743981 139743981 C T PHPT1 Silent p.S33S 0.10 TCGA-IB-7651-01 9 139752883 139752883 C T MAMDC4 Silent p.G902G 0.18 TCGA-IB-7651-01 9 139756714 139756714 C T EDF1 3'UTR 0.18 TCGA-IB-7651-01 9 139756945 139756945 A G EDF1 Intron 0.08 TCGA-IB-7651-01 9 139802654 139802654 C T TRAF2 Missense_Mutation p.R167W 0.14 deleterious(0) possibly_damaging(0.462) TCGA-IB-7651-01 9 139835759 139835759 C T FBXW5 Silent p.T467T 0.15 TCGA-IB-7651-01 9 139836053 139836053 C T FBXW5 Missense_Mutation p.A394T 0.20 tolerated(0.37) benign(0.148) TCGA-IB-7651-01 9 139836666 139836666 G A FBXW5 Silent p.L310L 0.21 TCGA-IB-7651-01 9 139873509 139873509 C T PTGDS Missense_Mutation p.A60V 0.18 tolerated(0.28) benign(0.098) TCGA-IB-7651-01 9 139873809 139873809 C T PTGDS Intron 0.15 TCGA-IB-7651-01 9 139874451 139874451 G A PTGDS Missense_Mutation p.A129T 0.17 deleterious(0.03) probably_damaging(0.987) TCGA-IB-7651-01 9 139903232 139903232 C T ABCA2 Missense_Mutation p.G2340D 0.23 tolerated(0.75) benign(0.001) TCGA-IB-7651-01 9 139903317 139903317 G A ABCA2 Missense_Mutation p.R2312W 0.21 deleterious(0) benign(0.018) TCGA-IB-7651-01 9 139904272 139904272 C T ABCA2 Silent p.R2193R 0.18 TCGA-IB-7651-01 9 139907734 139907734 G A ABCA2 Silent p.L1529L 0.19 TCGA-IB-7651-01 9 139911650 139911650 C T ABCA2 Missense_Mutation p.A851T 0.16 deleterious(0.03) probably_damaging(0.947) TCGA-IB-7651-01 9 139912431 139912431 C T ABCA2 Missense_Mutation p.R697H 0.17 tolerated(0.06) probably_damaging(0.983) TCGA-IB-7651-01 9 139914880 139914880 G A ABCA2 Missense_Mutation p.R445W 0.14 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 139929414 139929414 G A C9orf139 Missense_Mutation p.E161K 0.16 deleterious_low_confidence(0) possibly_damaging(0.502) TCGA-IB-7651-01 9 139944442 139944442 C A ENTPD2 Splice_Site p.X344_splice 0.13 TCGA-IB-7651-01 9 140003137 140003137 G A MAN1B1 3'UTR 0.10 TCGA-IB-7651-01 9 140005399 140005399 G A DPP7 Missense_Mutation p.R426W 0.15 deleterious(0.02) possibly_damaging(0.687) TCGA-IB-7651-01 9 140057086 140057086 G A GRIN1 Nonsense_Mutation p.W657* 0.15 TCGA-IB-7651-01 9 140069809 140069809 G T ANAPC2 Silent p.T712T 0.17 TCGA-IB-7651-01 9 140069920 140069920 G T ANAPC2 Missense_Mutation p.S675R 0.23 tolerated(0.64) benign(0.01) TCGA-IB-7651-01 9 140082017 140082017 G A ANAPC2 Missense_Mutation p.P219L 0.17 tolerated(0.48) benign(0.001) TCGA-IB-7651-01 9 140109118 140109118 C A NDOR1 Silent p.L273L 0.19 TCGA-IB-7651-01 9 140110152 140110152 G A NDOR1 Missense_Mutation p.A444T 0.19 tolerated(0.55) benign(0.001) TCGA-IB-7651-01 9 140110839 140110839 C T NDOR1 Missense_Mutation p.R598W 0.16 tolerated(0.07) possibly_damaging(0.655) TCGA-IB-7651-01 9 140110876 140110876 G A NDOR1 3'UTR 0.16 TCGA-IB-7651-01 9 140115570 140115570 G A RNF208 Missense_Mutation p.A32V 0.16 deleterious_low_confidence(0) benign(0.117) TCGA-IB-7651-01 9 140128134 140128134 G T SLC34A3 Missense_Mutation p.S269I 0.11 deleterious(0.03) benign(0.013) TCGA-IB-7651-01 9 140128878 140128878 C T SLC34A3 Silent p.F368F 0.20 TCGA-IB-7651-01 9 140130446 140130446 C A SLC34A3 Missense_Mutation p.L460M 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 9 140138683 140138683 G T FAM166A Missense_Mutation p.P269T 0.06 deleterious(0) possibly_damaging(0.667) TCGA-IB-7651-01 9 140139905 140139905 G T FAM166A Missense_Mutation p.L126M 0.04 tolerated(0.22) benign(0.12) TCGA-IB-7651-01 9 140147601 140147601 G T C9orf173 Nonsense_Mutation p.G283* 0.08 TCGA-IB-7651-01 9 140167012 140167012 G A NELFB Missense_Mutation p.R514K 0.21 tolerated(1) benign(0.004) TCGA-IB-7651-01 9 140201415 140201415 C T EXD3 Missense_Mutation p.S873N 0.16 tolerated_low_confidence(0.22) unknown(0) TCGA-IB-7651-01 9 140218237 140218237 C A EXD3 Missense_Mutation p.K708N 0.21 tolerated(0.07) possibly_damaging(0.494) TCGA-IB-7651-01 9 140267392 140267392 C T EXD3 Missense_Mutation p.V143I 0.06 tolerated(0.59) benign(0.019) TCGA-IB-7651-01 9 140328493 140328493 G A NOXA1 Missense_Mutation p.G419D 0.12 tolerated(1) benign(0.003) TCGA-IB-7651-01 9 140328737 140328737 C T NOXA1 Silent p.F459F 0.15 TCGA-IB-7651-01 9 140329483 140329483 C T ENTPD8 Silent p.P457P 0.23 TCGA-IB-7651-01 9 140330977 140330977 A G ENTPD8 Missense_Mutation p.V261A 0.20 tolerated(0.58) benign(0.044) TCGA-IB-7651-01 9 140331021 140331021 G A ENTPD8 Silent p.C246C 0.16 TCGA-IB-7651-01 9 140343774 140343774 C T NSMF 3'UTR 0.25 TCGA-IB-7651-01 9 140374823 140374823 G A PNPLA7 Missense_Mutation p.R841C 0.14 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 140392624 140392624 G A PNPLA7 Missense_Mutation p.R611W 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 9 140400201 140400201 G T PNPLA7 Missense_Mutation p.S446R 0.16 tolerated(0.17) benign(0.03) TCGA-IB-7651-01 9 140416117 140416117 G T PNPLA7 Missense_Mutation p.L310I 0.07 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 9 140437993 140437993 G T PNPLA7 Missense_Mutation p.L133M 0.16 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 9 140481555 140481555 G A ZMYND19 Missense_Mutation p.R75W 0.15 deleterious(0) probably_damaging(0.957) TCGA-IB-7651-01 9 140508087 140508087 G A ARRDC1 Missense_Mutation p.E101K 0.19 deleterious(0.02) possibly_damaging(0.53) TCGA-IB-7651-01 9 140508784 140508784 G A ARRDC1 Missense_Mutation p.D218N 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-IB-7651-01 9 140509464 140509464 G A ARRDC1 Intron 0.19 TCGA-IB-7651-01 9 140510210 140510210 G A C9orf37 Missense_Mutation p.R148W 0.20 tolerated_low_confidence(0.41) benign(0) TCGA-IB-7651-01 9 140611405 140611405 G A EHMT1 Missense_Mutation p.R138K 0.16 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-IB-7651-01 9 140672344 140672344 C T EHMT1 Missense_Mutation p.P677S 0.16 tolerated(0.35) benign(0.001) TCGA-IB-7651-01 9 140711975 140711975 C T EHMT1 Silent p.C1153C 0.14 TCGA-IB-7651-01 9 140728842 140728842 C T EHMT1 Silent p.N1194N 0.18 TCGA-IB-7651-01 9 140729348 140729348 G A EHMT1 Silent p.E1280E 0.15 TCGA-IB-7651-01 9 140809245 140809245 C A CACNA1B Missense_Mutation p.F254L 0.13 tolerated(0.14) benign(0.035) TCGA-IB-7651-01 9 14088266 14088266 G A NFIB 3'UTR 0.17 TCGA-IB-7651-01 9 140952524 140952524 C T CACNA1B Missense_Mutation p.A1377V 0.19 tolerated(0.4) probably_damaging(0.999) TCGA-IB-7651-01 9 140995616 140995616 C T CACNA1B Intron 0.17 TCGA-IB-7651-01 9 141012423 141012423 G T CACNA1B Nonsense_Mutation p.E1935* 0.13 TCGA-IB-7651-01 9 141015943 141015943 G T CACNA1B Missense_Mutation p.S2171I 0.20 deleterious(0) possibly_damaging(0.83) TCGA-IB-7651-01 9 14307409 14307409 C T NFIB Silent p.K47K 0.20 TCGA-IB-7651-01 9 14720268 14720268 G A CER1 Silent p.H208H 0.17 TCGA-IB-7651-01 9 14720322 14720322 G A CER1 Silent p.C190C 0.19 TCGA-IB-7651-01 9 14747318 14747318 C A FREM1 Nonsense_Mutation p.E1985* 0.14 TCGA-IB-7651-01 9 14819312 14819312 G A FREM1 Silent p.H822H 0.21 TCGA-IB-7651-01 9 14841558 14841558 C A FREM1 Missense_Mutation p.D590Y 0.11 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 9 14851350 14851350 C A FREM1 Missense_Mutation p.D362Y 0.20 deleterious(0) probably_damaging(0.967) TCGA-IB-7651-01 9 15422996 15422996 G A SNAPC3 Missense_Mutation p.R40H 0.19 deleterious(0.04) benign(0.006) TCGA-IB-7651-01 9 15447239 15447240 - A SNAPC3 Frame_Shift_Ins p.D245Rfs*11 0.19 TCGA-IB-7651-01 9 15723736 15723736 A C CCDC171 Missense_Mutation p.N495H 0.11 deleterious(0.03) benign(0.404) TCGA-IB-7651-01 9 16436949 16436949 T C BNC2 Missense_Mutation p.T415A 0.18 tolerated(0.41) benign(0) TCGA-IB-7651-01 9 16437072 16437072 T C BNC2 Missense_Mutation p.T374A 0.18 tolerated(0.53) benign(0.004) TCGA-IB-7651-01 9 17298326 17298326 A G CNTLN Silent p.T374T 0.14 TCGA-IB-7651-01 9 17394704 17394704 A C CNTLN Missense_Mutation p.K751T 0.22 tolerated(0.33) benign(0.359) TCGA-IB-7651-01 9 17466758 17466758 G T CNTLN Missense_Mutation p.A1242S 0.12 tolerated(0.15) benign(0.442) TCGA-IB-7651-01 9 175704 175704 C T CBWD1 Missense_Mutation p.G79R 0.07 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 9 178976 178976 C A CBWD1 5'UTR 0.40 TCGA-IB-7651-01 9 18622252 18622252 C T ADAMTSL1 Silent p.C162C 0.20 TCGA-IB-7651-01 9 18681875 18681875 G A ADAMTSL1 Missense_Mutation p.M469I 0.17 tolerated(0.49) benign(0.001) TCGA-IB-7651-01 9 18721548 18721548 G A ADAMTSL1 Missense_Mutation p.V631M 0.05 deleterious(0) possibly_damaging(0.903) TCGA-IB-7651-01 9 18777494 18777494 C T ADAMTSL1 Silent p.P1089P 0.21 TCGA-IB-7651-01 9 18892409 18892409 G A ADAMTSL1 Missense_Mutation p.A1556T 0.14 tolerated(0.35) benign(0.155) TCGA-IB-7651-01 9 19050016 19050016 C T RRAGA Missense_Mutation p.A120V 0.06 deleterious(0.02) probably_damaging(0.918) TCGA-IB-7651-01 9 19089409 19089409 C A HAUS6 Splice_Site p.X195_splice 0.13 TCGA-IB-7651-01 9 19346246 19346246 G T DENND4C Missense_Mutation p.R1111M 0.19 deleterious(0.01) possibly_damaging(0.882) TCGA-IB-7651-01 9 19378800 19378800 T C RPS6 Silent p.R85R 0.11 TCGA-IB-7651-01 9 19786640 19786640 G A SLC24A2 Silent p.G75G 0.05 TCGA-IB-7651-01 9 2073274 2073274 C T SMARCA2 Silent p.G603G 0.14 TCGA-IB-7651-01 9 20781887 20781887 G A FOCAD Missense_Mutation p.E386K 0.07 tolerated(0.24) benign(0.231) TCGA-IB-7651-01 9 20781925 20781925 A G FOCAD Silent p.Q398Q 0.21 TCGA-IB-7651-01 9 20981573 20981573 C A FOCAD Missense_Mutation p.A1509D 0.18 deleterious(0.02) benign(0.424) TCGA-IB-7651-01 9 20990139 20990139 G A FOCAD Silent p.L1674L 0.15 TCGA-IB-7651-01 9 2104068 2104068 C T SMARCA2 Missense_Mutation p.A1064V 0.17 possibly_damaging(0.499) TCGA-IB-7651-01 9 2119478 2119478 C T SMARCA2 Silent p.D1235D 0.13 TCGA-IB-7651-01 9 21206625 21206625 T C IFNA10 Missense_Mutation p.K158E 0.04 tolerated(0.19) benign(0.207) TCGA-IB-7651-01 9 21217213 21217213 C T IFNA16 Missense_Mutation p.S31N 0.15 tolerated(0.61) benign(0.014) TCGA-IB-7651-01 9 21227543 21227543 T G IFNA17 3'UTR 0.18 TCGA-IB-7651-01 9 21333707 21333707 T G KLHL9 Silent p.S384S 0.17 TCGA-IB-7651-01 9 21334090 21334090 C T KLHL9 Missense_Mutation p.V257I 0.19 tolerated(0.05) benign(0.284) TCGA-IB-7651-01 9 21862039 21862039 G T MTAP 3'UTR 0.18 TCGA-IB-7651-01 9 22009071 22009071 G A CDKN2B 5'UTR 0.29 TCGA-IB-7651-01 9 23692688 23692688 C T ELAVL2 Missense_Mutation p.C316Y 0.16 deleterious(0.02) probably_damaging(0.983) TCGA-IB-7651-01 9 23701384 23701384 G A ELAVL2 Missense_Mutation p.R236C 0.04 deleterious(0.05) benign(0.082) TCGA-IB-7651-01 9 23705055 23705055 G A ELAVL2 Silent p.R116R 0.20 TCGA-IB-7651-01 9 23765066 23765066 G A ELAVL2 Intron 0.21 TCGA-IB-7651-01 9 26892724 26892724 C A CAAP1 5'UTR 0.13 TCGA-IB-7651-01 9 26905793 26905793 G A PLAA Silent p.L702L 0.20 TCGA-IB-7651-01 9 2717904 2717904 C T KCNV2 Silent p.I55I 0.15 TCGA-IB-7651-01 9 2718157 2718157 G A KCNV2 Missense_Mutation p.D140N 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 2719093 2719093 G A KCNV2 Missense_Mutation p.A452T 0.19 tolerated(0.32) possibly_damaging(0.746) TCGA-IB-7651-01 9 27197484 27197484 C T TEK Missense_Mutation p.S599L 0.17 deleterious(0.01) benign(0.16) TCGA-IB-7651-01 9 27204926 27204926 G A TEK Missense_Mutation p.G743R 0.09 tolerated(0.59) benign(0.172) TCGA-IB-7651-01 9 27524894 27524894 G A IFNK Missense_Mutation p.R187Q 0.13 tolerated(0.84) benign(0.073) TCGA-IB-7651-01 9 2811514 2811514 C T KIAA0020 Silent p.L494L 0.19 TCGA-IB-7651-01 9 32488121 32488121 A G DDX58 Missense_Mutation p.I345T 0.23 deleterious(0) possibly_damaging(0.622) TCGA-IB-7651-01 9 32541482 32541482 T G TOPORS Missense_Mutation p.N1014T 0.20 tolerated_low_confidence(0.21) unknown(0) TCGA-IB-7651-01 9 32542990 32542990 C T TOPORS Silent p.E511E 0.13 TCGA-IB-7651-01 9 32543588 32543588 C A TOPORS Missense_Mutation p.G312V 0.16 deleterious(0.05) possibly_damaging(0.766) TCGA-IB-7651-01 9 32544209 32544209 A G TOPORS Missense_Mutation p.I105T 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 9 32633981 32633981 G A TAF1L Missense_Mutation p.P533S 0.16 deleterious(0) possibly_damaging(0.888) TCGA-IB-7651-01 9 32634136 32634136 T C TAF1L Missense_Mutation p.K481R 0.19 tolerated(0.32) benign(0.008) TCGA-IB-7651-01 9 32635647 32635647 G T TAF1L 5'UTR 0.09 TCGA-IB-7651-01 9 32784835 32784835 C T TMEM215 Silent p.Y218Y 0.19 TCGA-IB-7651-01 9 32987600 32987600 C A APTX Missense_Mutation p.S142I 0.16 tolerated(0.11) benign(0.258) TCGA-IB-7651-01 9 33034281 33034281 C T DNAJA1 Silent p.G237G 0.08 TCGA-IB-7651-01 9 33385652 33385652 G A AQP7 Silent p.V246V 0.14 TCGA-IB-7651-01 9 33447441 33447441 G T AQP3 Missense_Mutation p.L30M 0.17 deleterious(0) probably_damaging(0.963) TCGA-IB-7651-01 9 33468868 33468868 G A NOL6 Silent p.G343G 0.04 TCGA-IB-7651-01 9 33676518 33676518 G A PTENP1 RNA 0.14 TCGA-IB-7651-01 9 33922776 33922776 C T UBAP2 Missense_Mutation p.G1058D 0.19 deleterious(0) unknown(0) TCGA-IB-7651-01 9 33953440 33953440 A G UBAP2 Missense_Mutation p.V300A 0.15 tolerated(0.49) benign(0.084) TCGA-IB-7651-01 9 34017072 34017072 C T UBAP2 Silent p.T25T 0.09 TCGA-IB-7651-01 9 34263156 34263156 G A KIF24 Silent p.I486I 0.17 TCGA-IB-7651-01 9 34372898 34372898 C T KIAA1161 5'UTR 0.19 TCGA-IB-7651-01 9 34379117 34379117 G T C9orf24 3'UTR 0.18 TCGA-IB-7651-01 9 34402709 34402709 C T FAM219A Missense_Mutation p.R86Q 0.17 tolerated(0.09) probably_damaging(0.999) TCGA-IB-7651-01 9 34500719 34500719 G T DNAI1 Splice_Site p.X301_splice 0.12 TCGA-IB-7651-01 9 34506735 34506735 C A DNAI1 Missense_Mutation p.H392N 0.16 deleterious(0.01) benign(0.411) TCGA-IB-7651-01 9 34635839 34635839 G A SIGMAR1 Silent p.H154H 0.14 TCGA-IB-7651-01 9 34648390 34648390 C A GALT Silent p.A208A 0.19 TCGA-IB-7651-01 9 34662348 34662348 G T CCL27 Missense_Mutation p.L46I 0.16 tolerated(0.06) benign(0.068) TCGA-IB-7651-01 9 34709608 34709608 A T CCL21 Missense_Mutation p.M87K 0.19 deleterious(0) probably_damaging(0.98) TCGA-IB-7651-01 9 34993428 34993428 G A DNAJB5 Silent p.Q180Q 0.19 TCGA-IB-7651-01 9 35044417 35044417 C A C9orf131 Silent p.S597S 0.22 TCGA-IB-7651-01 9 35045017 35045017 C T C9orf131 Silent p.S797S 0.16 TCGA-IB-7651-01 9 35075020 35075020 C T FANCG Missense_Mutation p.A514T 0.13 tolerated(0.35) benign(0.007) TCGA-IB-7651-01 9 35093540 35093540 C T PIGO Missense_Mutation p.V273I 0.10 tolerated(0.05) possibly_damaging(0.823) TCGA-IB-7651-01 9 35095227 35095227 C T PIGO Silent p.E112E 0.19 TCGA-IB-7651-01 9 35101490 35101490 C T STOML2 Missense_Mutation p.R171H 0.08 tolerated(0.1) probably_damaging(0.939) TCGA-IB-7651-01 9 35381663 35381663 T C UNC13B Silent p.I785I 0.16 TCGA-IB-7651-01 9 35403836 35403836 C T UNC13B Silent p.L1528L 0.14 TCGA-IB-7651-01 9 35548113 35548113 C T RUSC2 Missense_Mutation p.A532V 0.19 tolerated(0.06) benign(0.005) TCGA-IB-7651-01 9 35548220 35548220 G A RUSC2 Missense_Mutation p.D568N 0.14 deleterious(0.01) possibly_damaging(0.505) TCGA-IB-7651-01 9 35563812 35563812 C A FAM166B Missense_Mutation p.S5I 0.07 deleterious(0.01) benign(0.408) TCGA-IB-7651-01 9 35612842 35612842 T C CD72 Intron 0.04 TCGA-IB-7651-01 9 35685060 35685060 C A TPM2 Splice_Site p.X213_splice 0.21 TCGA-IB-7651-01 9 35685748 35685748 G A TPM2 Silent p.R90R 0.17 TCGA-IB-7651-01 9 35705570 35705570 G A TLN1 Missense_Mutation p.A1904V 0.19 tolerated(0.73) possibly_damaging(0.508) TCGA-IB-7651-01 9 35707247 35707247 G A TLN1 Missense_Mutation p.R1593W 0.12 deleterious(0) benign(0.248) TCGA-IB-7651-01 9 35708471 35708471 A G TLN1 Missense_Mutation p.L1446P 0.15 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 9 35714813 35714813 C G TLN1 Missense_Mutation p.A939P 0.14 deleterious(0.03) benign(0.399) TCGA-IB-7651-01 9 35715097 35715097 C T TLN1 Missense_Mutation p.A905T 0.17 tolerated(0.21) probably_damaging(0.989) TCGA-IB-7651-01 9 35725685 35725685 C T TLN1 Missense_Mutation p.A3T 0.15 tolerated(0.76) benign(0.004) TCGA-IB-7651-01 9 35737268 35737268 C T GBA2 Silent p.Q894Q 0.14 TCGA-IB-7651-01 9 35739666 35739666 C T GBA2 Missense_Mutation p.R514H 0.11 tolerated(0.69) benign(0.001) TCGA-IB-7651-01 9 35740847 35740847 G A GBA2 Missense_Mutation p.T334M 0.20 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 9 35741771 35741771 G A GBA2 Silent p.Y228Y 0.18 TCGA-IB-7651-01 9 35748840 35748840 G A GBA2 5'UTR 0.15 TCGA-IB-7651-01 9 35749374 35749374 G T RGP1 5'UTR 0.13 TCGA-IB-7651-01 9 35749916 35749916 G A GBA2 5'Flank 0.18 TCGA-IB-7651-01 9 35749985 35749985 C T RGP1 Intron 0.17 TCGA-IB-7651-01 9 35792966 35792966 C A NPR2 Silent p.V187V 0.05 TCGA-IB-7651-01 9 35805906 35805906 C A NPR2 Missense_Mutation p.S709R 0.17 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 9 35811564 35811564 C T SPAG8 Missense_Mutation p.G160D 0.20 tolerated_low_confidence(0.17) unknown(0) TCGA-IB-7651-01 9 35842555 35842555 G A TMEM8B Silent p.P40P 0.16 TCGA-IB-7651-01 9 35957155 35957155 G A OR2S2 Missense_Mutation p.P314L 0.20 deleterious(0.02) benign(0.001) TCGA-IB-7651-01 9 36102199 36102199 G T RECK Missense_Mutation p.K469N 0.14 tolerated(0.06) benign(0) TCGA-IB-7651-01 9 36118895 36118895 G A RECK Missense_Mutation p.V799I 0.05 tolerated(0.4) benign(0) TCGA-IB-7651-01 9 36148567 36148567 C A GLIPR2 Missense_Mutation p.T49K 0.09 tolerated(0.25) benign(0.257) TCGA-IB-7651-01 9 36169849 36169849 G A CCIN Missense_Mutation p.R117Q 0.06 tolerated(0.2) benign(0.026) TCGA-IB-7651-01 9 36169888 36169888 G A CCIN Missense_Mutation p.R130H 0.16 tolerated(0.22) benign(0.003) TCGA-IB-7651-01 9 36218206 36218206 G A GNE Missense_Mutation p.A667V 0.20 tolerated_low_confidence(0.33) benign(0.001) TCGA-IB-7651-01 9 36229026 36229026 C T GNE Silent p.Q385Q 0.18 TCGA-IB-7651-01 9 36589623 36589623 G A MELK Missense_Mutation p.A79T 0.05 tolerated(0.19) benign(0.008) TCGA-IB-7651-01 9 36677318 36677318 C A MELK Missense_Mutation p.S647Y 0.21 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 9 37002672 37002672 C T PAX5 Missense_Mutation p.D193N 0.10 tolerated(1) benign(0.003) TCGA-IB-7651-01 9 372257 372257 C T DOCK8 Missense_Mutation p.P694S 0.16 deleterious(0.01) probably_damaging(0.973) TCGA-IB-7651-01 9 376229 376229 C A DOCK8 Missense_Mutation p.P710H 0.18 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 9 37735568 37735568 A G FRMPD1 Missense_Mutation p.Y413C 0.17 tolerated(0.1) benign(0.031) TCGA-IB-7651-01 9 37744622 37744622 G A FRMPD1 Missense_Mutation p.D865N 0.18 tolerated(0.29) benign(0.002) TCGA-IB-7651-01 9 37744962 37744962 G A FRMPD1 Missense_Mutation p.G978D 0.19 tolerated_low_confidence(0.27) benign(0.008) TCGA-IB-7651-01 9 37745576 37745576 G T FRMPD1 Nonsense_Mutation p.G1183* 0.15 TCGA-IB-7651-01 9 37777645 37777645 G T TRMT10B Missense_Mutation p.A298S 0.06 tolerated(0.12) possibly_damaging(0.449) TCGA-IB-7651-01 9 37782101 37782101 C T EXOSC3 Missense_Mutation p.A170T 0.10 deleterious(0.03) probably_damaging(0.993) TCGA-IB-7651-01 9 37861647 37861647 A G DCAF10 3'UTR 0.14 TCGA-IB-7651-01 9 37974723 37974723 C T SHB Missense_Mutation p.S317N 0.15 tolerated(0.24) benign(0.306) TCGA-IB-7651-01 9 3829351 3829351 T C GLIS3 Missense_Mutation p.D872G 0.18 tolerated(0.67) probably_damaging(0.997) TCGA-IB-7651-01 9 38396312 38396312 G A ALDH1B1 Silent p.L189L 0.17 TCGA-IB-7651-01 9 38615926 38615926 C T ANKRD18A Splice_Site p.X107_splice 0.12 TCGA-IB-7651-01 9 39109231 39109231 A C CNTNAP3 Missense_Mutation p.I764S 0.17 deleterious(0.01) possibly_damaging(0.873) TCGA-IB-7651-01 9 39133078 39133078 C T CNTNAP3 Missense_Mutation p.R644Q 0.11 tolerated(0.62) benign(0.006) TCGA-IB-7651-01 9 39133095 39133095 G A CNTNAP3 Silent p.P638P 0.35 TCGA-IB-7651-01 9 39140635 39140635 G T CNTNAP3 Missense_Mutation p.S586Y 0.21 deleterious(0.01) possibly_damaging(0.578) TCGA-IB-7651-01 9 39149958 39149958 G A CNTNAP3 Silent p.S498S 0.14 TCGA-IB-7651-01 9 39887020 39887020 C T SPATA31A2 Missense_Mutation p.R88W 0.13 deleterious(0) benign(0.003) TCGA-IB-7651-01 9 40702763 40702763 G A SPATA31A3 Silent p.E140E 0.09 TCGA-IB-7651-01 9 40716167 40716167 C T FAM74A3 RNA 0.09 TCGA-IB-7651-01 9 40772352 40772352 A C ZNF658 Missense_Mutation p.F975V 0.14 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 9 40772872 40772872 G A ZNF658 Silent p.N801N 0.19 TCGA-IB-7651-01 9 40773877 40773877 T C ZNF658 Silent p.K466K 0.13 TCGA-IB-7651-01 9 4118509 4118509 C T GLIS3 Silent p.S323S 0.07 TCGA-IB-7651-01 9 4286138 4286138 C T GLIS3 Silent p.P96P 0.14 TCGA-IB-7651-01 9 43627680 43627680 G A SPATA31A6 Missense_Mutation p.A336V 0.06 tolerated(1) benign(0.003) TCGA-IB-7651-01 9 4576049 4576049 C T SLC1A1 Silent p.V308V 0.18 TCGA-IB-7651-01 9 4576732 4576732 G T SLC1A1 Missense_Mutation p.D388Y 0.17 tolerated(0.07) possibly_damaging(0.608) TCGA-IB-7651-01 9 4576765 4576765 T C SLC1A1 Splice_Site p.X398_splice 0.15 TCGA-IB-7651-01 9 4583161 4583161 C T SLC1A1 Silent p.V439V 0.15 TCGA-IB-7651-01 9 4684890 4684890 G A CDC37L1 Missense_Mutation p.G49E 0.17 tolerated(0.18) benign(0.009) TCGA-IB-7651-01 9 4719298 4719298 C A AK3 Missense_Mutation p.R94M 0.10 deleterious(0.01) probably_damaging(0.985) TCGA-IB-7651-01 9 5069022 5069022 C T JAK2 Nonsense_Mutation p.R443* 0.12 TCGA-IB-7651-01 9 5073726 5073726 G T JAK2 Missense_Mutation p.S602I 0.12 deleterious(0) possibly_damaging(0.892) TCGA-IB-7651-01 9 5164187 5164187 G A INSL6 Missense_Mutation p.S123L 0.17 tolerated(1) possibly_damaging(0.849) TCGA-IB-7651-01 9 5300153 5300153 G A RLN2 Missense_Mutation p.A168V 0.23 tolerated(0.12) benign(0.017) TCGA-IB-7651-01 9 5467858 5467858 C T CD274 Missense_Mutation p.T290M 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IB-7651-01 9 5754862 5754862 G T KIAA1432 Missense_Mutation p.G542C 0.08 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 9 5774231 5774231 C A KIAA1432 Missense_Mutation p.D1419E 0.22 tolerated_low_confidence(0.3) probably_damaging(0.99) TCGA-IB-7651-01 9 5920791 5920791 A G KIAA2026 Silent p.C1735C 0.20 TCGA-IB-7651-01 9 6007544 6007544 C A KIAA2026 Missense_Mutation p.G82C 0.15 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 9 6241745 6241745 G A IL33 Nonsense_Mutation p.W17* 0.16 TCGA-IB-7651-01 9 6250583 6250583 G A IL33 Silent p.R67R 0.22 TCGA-IB-7651-01 9 6328471 6328471 C A TPD52L3 5'UTR 0.24 TCGA-IB-7651-01 9 6328541 6328541 T G TPD52L3 5'UTR 0.18 TCGA-IB-7651-01 9 6477759 6477759 A G UHRF2 Missense_Mutation p.I371V 0.05 deleterious(0.01) benign(0.002) TCGA-IB-7651-01 9 65506578 65506578 C T SPATA31A7 Missense_Mutation p.V328M 0.16 tolerated(0.12) benign(0.003) TCGA-IB-7651-01 9 6592198 6592198 A G GLDC Missense_Mutation p.V476A 0.22 deleterious(0.05) probably_damaging(0.997) TCGA-IB-7651-01 9 6645328 6645328 G A GLDC Missense_Mutation p.P58S 0.18 tolerated(0.23) probably_damaging(0.998) TCGA-IB-7651-01 9 6814873 6814873 G T KDM4C Intron 0.15 TCGA-IB-7651-01 9 69423942 69423942 G T ANKRD20A4 Missense_Mutation p.Q746H 0.23 deleterious(0) possibly_damaging(0.534) TCGA-IB-7651-01 9 71098868 71098868 C T PGM5 Silent p.G461G 0.16 TCGA-IB-7651-01 9 71155760 71155760 C T TMEM252 5'UTR 0.19 TCGA-IB-7651-01 9 712587 712587 G T KANK1 Missense_Mutation p.E607D 0.16 tolerated(0.15) benign(0.167) TCGA-IB-7651-01 9 71532675 71532675 C T PIP5K1B Missense_Mutation p.T328I 0.17 tolerated(0.06) possibly_damaging(0.844) TCGA-IB-7651-01 9 71555571 71555571 C T PIP5K1B Missense_Mutation p.S456F 0.17 tolerated(0.11) possibly_damaging(0.793) TCGA-IB-7651-01 9 71555659 71555659 C T PIP5K1B Silent p.Y485Y 0.20 TCGA-IB-7651-01 9 71628475 71628475 C A PRKACG Missense_Mutation p.Q178H 0.24 tolerated(0.44) benign(0.035) TCGA-IB-7651-01 9 71628546 71628546 C T PRKACG Missense_Mutation p.V155I 0.20 tolerated(0.44) benign(0.001) TCGA-IB-7651-01 9 71629011 71629011 C T PRKACG 5'UTR 0.21 TCGA-IB-7651-01 9 71629029 71629029 C T PRKACG 5'UTR 0.17 TCGA-IB-7651-01 9 71851087 71851087 C A TJP2 Missense_Mutation p.L673M 0.18 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 9 71861684 71861684 C T TJP2 Missense_Mutation p.A913V 0.18 tolerated(0.1) possibly_damaging(0.863) TCGA-IB-7651-01 9 71863050 71863050 C T TJP2 Silent p.G961G 0.27 TCGA-IB-7651-01 9 71869243 71869243 C T TJP2 Missense_Mutation p.R1207C 0.22 deleterious(0) probably_damaging(0.927) TCGA-IB-7651-01 9 72064647 72064647 G A APBA1 Silent p.S678S 0.19 TCGA-IB-7651-01 9 72067200 72067200 C A APBA1 Missense_Mutation p.Q602H 0.12 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 9 72071981 72071981 G A APBA1 Silent p.N530N 0.21 TCGA-IB-7651-01 9 72131056 72131056 G A APBA1 Silent p.I357I 0.15 TCGA-IB-7651-01 9 72347116 72347116 T A PTAR1 Missense_Mutation p.N194I 0.22 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 72741317 72741317 C T MAMDC2 Missense_Mutation p.P296S 0.16 tolerated(0.07) possibly_damaging(0.886) TCGA-IB-7651-01 9 72833493 72833493 G T MAMDC2 Missense_Mutation p.S631I 0.19 tolerated(0.09) benign(0.424) TCGA-IB-7651-01 9 72841044 72841044 T G MAMDC2 3'UTR 0.18 TCGA-IB-7651-01 9 72965133 72965133 T G SMC5 Missense_Mutation p.V998G 0.05 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 73151789 73151789 T C TRPM3 Missense_Mutation p.I1402V 0.22 deleterious_low_confidence(0.02) probably_damaging(0.976) TCGA-IB-7651-01 9 73213583 73213583 G T TRPM3 Missense_Mutation p.L922M 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-IB-7651-01 9 73230953 73230953 G T TRPM3 Missense_Mutation p.S787R 0.16 tolerated(0.29) possibly_damaging(0.88) TCGA-IB-7651-01 9 73233803 73233803 G A TRPM3 Missense_Mutation p.R768C 0.19 deleterious(0) probably_damaging(0.984) TCGA-IB-7651-01 9 73426137 73426137 C T TRPM3 Intron 0.10 TCGA-IB-7651-01 9 74337391 74337391 G T TMEM2 Missense_Mutation p.S740Y 0.18 deleterious(0) benign(0.139) TCGA-IB-7651-01 9 74481776 74481776 T G ABHD17B Missense_Mutation p.N265T 0.19 tolerated(0.1) possibly_damaging(0.714) TCGA-IB-7651-01 9 74489764 74489764 C T ABHD17B Missense_Mutation p.R78K 0.20 tolerated(0.41) benign(0.059) TCGA-IB-7651-01 9 74587764 74587764 C T C9orf85 3'UTR 0.15 TCGA-IB-7651-01 9 74587824 74587824 C T C9orf85 3'UTR 0.20 TCGA-IB-7651-01 9 74863328 74863328 G A GDA Intron 0.24 TCGA-IB-7651-01 9 74971957 74971957 C A ZFAND5 Missense_Mutation p.S128I 0.21 tolerated(0.06) benign(0.008) TCGA-IB-7651-01 9 75450925 75450925 C T TMC1 3'UTR 0.18 TCGA-IB-7651-01 9 75775219 75775219 T C ANXA1 Missense_Mutation p.L104P 0.17 deleterious(0) probably_damaging(0.985) TCGA-IB-7651-01 9 77245232 77245232 C T RORB Silent p.G14G 0.16 TCGA-IB-7651-01 9 77354718 77354718 A G TRPM6 Missense_Mutation p.V1803A 0.04 deleterious(0.02) probably_damaging(0.974) TCGA-IB-7651-01 9 77354846 77354846 C A TRPM6 Missense_Mutation p.Q1760H 0.17 deleterious(0.04) benign(0.081) TCGA-IB-7651-01 9 77377222 77377222 C T TRPM6 Nonsense_Mutation p.W1455* 0.15 TCGA-IB-7651-01 9 77416926 77416926 C T TRPM6 Missense_Mutation p.E633K 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 9 77422987 77422987 A C TRPM6 Missense_Mutation p.F534C 0.09 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 77427277 77427277 C A TRPM6 Nonsense_Mutation p.E461* 0.19 TCGA-IB-7651-01 9 77431663 77431663 C A TRPM6 Missense_Mutation p.E410D 0.17 tolerated(1) benign(0.013) TCGA-IB-7651-01 9 77613623 77613623 A G C9orf41 Silent p.A267A 0.14 TCGA-IB-7651-01 9 77692434 77692434 C T NMRK1 Missense_Mutation p.S31N 0.20 tolerated(0.07) benign(0.103) TCGA-IB-7651-01 9 7799610 7799610 C T TMEM261 Missense_Mutation p.R42H 0.19 tolerated(0.12) benign(0.002) TCGA-IB-7651-01 9 7799703 7799703 G T TMEM261 Missense_Mutation p.S11Y 0.13 tolerated(1) benign(0.088) TCGA-IB-7651-01 9 78506218 78506218 G A PCSK5 Missense_Mutation p.V41I 0.18 tolerated(0.13) benign(0.433) TCGA-IB-7651-01 9 78771994 78771994 C T PCSK5 Missense_Mutation p.A449V 0.21 deleterious(0) possibly_damaging(0.768) TCGA-IB-7651-01 9 78804038 78804038 C T PCSK5 Silent p.C803C 0.18 TCGA-IB-7651-01 9 78947380 78947380 C A PCSK5 Silent p.G1507G 0.14 TCGA-IB-7651-01 9 79003496 79003496 C T RFK Missense_Mutation p.R104K 0.14 deleterious(0.01) possibly_damaging(0.79) TCGA-IB-7651-01 9 79118164 79118164 C T GCNT1 Silent p.F289F 0.20 TCGA-IB-7651-01 9 79118692 79118692 G A GCNT1 3'UTR 0.18 TCGA-IB-7651-01 9 79252331 79252331 T C PRUNE2 Intron 0.17 TCGA-IB-7651-01 9 79253164 79253164 G A PRUNE2 Silent p.A2923A 0.14 TCGA-IB-7651-01 9 79319009 79319009 C T PRUNE2 Missense_Mutation p.S2507N 0.17 tolerated(0.51) benign(0.002) TCGA-IB-7651-01 9 79320449 79320449 G A PRUNE2 Silent p.D2247D 0.18 TCGA-IB-7651-01 9 79320790 79320790 G A PRUNE2 Missense_Mutation p.L2134F 0.17 tolerated(0.39) benign(0.009) TCGA-IB-7651-01 9 79320829 79320829 G T PRUNE2 Missense_Mutation p.L2121I 0.15 tolerated(0.86) benign(0.001) TCGA-IB-7651-01 9 79321848 79321848 G A PRUNE2 Missense_Mutation p.A1781V 0.17 tolerated(0.38) benign(0.025) TCGA-IB-7651-01 9 79323618 79323618 G A PRUNE2 Missense_Mutation p.A1191V 0.17 tolerated(0.28) benign(0.063) TCGA-IB-7651-01 9 79325119 79325119 G T PRUNE2 Missense_Mutation p.P691T 0.20 tolerated(0.26) benign(0.013) TCGA-IB-7651-01 9 79438601 79438601 G T PRUNE2 Missense_Mutation p.L235M 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 9 79634658 79634658 G A FOXB2 Missense_Mutation p.A30T 0.16 tolerated(0.1) unknown(0) TCGA-IB-7651-01 9 79634736 79634736 C T FOXB2 Missense_Mutation p.R56C 0.16 deleterious(0) unknown(0) TCGA-IB-7651-01 9 79635075 79635075 C T FOXB2 Missense_Mutation p.P169S 0.17 tolerated_low_confidence(0.83) unknown(0) TCGA-IB-7651-01 9 79841408 79841408 C T VPS13A Silent p.Y417Y 0.16 TCGA-IB-7651-01 9 79867222 79867222 T G VPS13A Missense_Mutation p.L748V 0.19 tolerated(1) benign(0.001) TCGA-IB-7651-01 9 79908284 79908284 T C VPS13A Missense_Mutation p.F1123L 0.21 deleterious(0.05) probably_damaging(0.998) TCGA-IB-7651-01 9 79933430 79933430 C T VPS13A Silent p.L1746L 0.08 TCGA-IB-7651-01 9 79934591 79934591 T C VPS13A Splice_Site p.X1805_splice 0.19 TCGA-IB-7651-01 9 79968343 79968343 G T VPS13A Missense_Mutation p.D2480Y 0.12 tolerated(0.2) benign(0.007) TCGA-IB-7651-01 9 79985233 79985233 G T VPS13A Missense_Mutation p.V2910F 0.20 tolerated(0.55) possibly_damaging(0.764) TCGA-IB-7651-01 9 80030978 80030978 C A VPS13A 3'UTR 0.20 TCGA-IB-7651-01 9 80038884 80038884 G T GNA14 3'UTR 0.24 TCGA-IB-7651-01 9 80412494 80412494 G A GNAQ Nonsense_Mutation p.R183* 0.33 TCGA-IB-7651-01 9 80866840 80866840 A G CEP78 Silent p.K363K 0.15 TCGA-IB-7651-01 9 80866940 80866940 G A CEP78 Missense_Mutation p.E397K 0.19 tolerated(0.07) benign(0.066) TCGA-IB-7651-01 9 82267698 82267698 A G TLE4 Missense_Mutation p.D194G 0.18 tolerated(0.07) benign(0.028) TCGA-IB-7651-01 9 82319707 82319707 G T TLE4 Missense_Mutation p.V207L 0.19 tolerated(0.98) benign(0.001) TCGA-IB-7651-01 9 82335058 82335058 C T TLE4 Missense_Mutation p.A563V 0.19 deleterious(0) benign(0.334) TCGA-IB-7651-01 9 8340450 8340450 C T PTPRD Missense_Mutation p.A1716T 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 9 8376626 8376626 C T PTPRD Missense_Mutation p.R1496Q 0.19 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 9 84205779 84205779 G T TLE1 Missense_Mutation p.F590L 0.19 deleterious(0.01) probably_damaging(0.989) TCGA-IB-7651-01 9 84228383 84228383 G A TLE1 Silent p.S324S 0.17 TCGA-IB-7651-01 9 84528550 84528550 G A SPATA31D5P RNA 0.20 TCGA-IB-7651-01 9 84531925 84531925 G A SPATA31D5P RNA 0.20 TCGA-IB-7651-01 9 84533885 84533885 G A SPATA31D5P RNA 0.17 TCGA-IB-7651-01 9 84548072 84548072 T C RP11-383M4.6 Intron 0.05 TCGA-IB-7651-01 9 84549468 84549468 G A RP11-383M4.6 Intron 0.11 TCGA-IB-7651-01 9 84609292 84609292 G A SPATA31D1 Missense_Mutation p.E1303K 0.17 tolerated(0.11) possibly_damaging(0.866) TCGA-IB-7651-01 9 84609877 84609877 C T SPATA31D1 Nonsense_Mutation p.Q1498* 0.14 TCGA-IB-7651-01 9 847106 847106 G T DMRT1 Missense_Mutation p.Q167H 0.12 tolerated(0.13) benign(0.034) TCGA-IB-7651-01 9 85637250 85637250 C T RASEF Splice_Site p.X223_splice 0.17 TCGA-IB-7651-01 9 85862972 85862972 G A FRMD3 Missense_Mutation p.S552L 0.18 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 9 85863059 85863059 G T FRMD3 Missense_Mutation p.P523Q 0.18 tolerated(0.35) possibly_damaging(0.447) TCGA-IB-7651-01 9 86278795 86278795 G T UBQLN1 Missense_Mutation p.P538T 0.18 tolerated(0.1) possibly_damaging(0.448) TCGA-IB-7651-01 9 86293447 86293447 C A UBQLN1 Missense_Mutation p.S260I 0.17 deleterious(0) probably_damaging(0.974) TCGA-IB-7651-01 9 86293476 86293476 C A UBQLN1 Missense_Mutation p.E250D 0.16 deleterious(0) probably_damaging(0.952) TCGA-IB-7651-01 9 8636735 8636735 G A PTPRD Silent p.N58N 0.15 TCGA-IB-7651-01 9 8636839 8636839 G A PTPRD Missense_Mutation p.P24S 0.14 deleterious(0) probably_damaging(0.99) TCGA-IB-7651-01 9 86518147 86518147 A G KIF27 Missense_Mutation p.V429A 0.16 tolerated(0.78) benign(0.02) TCGA-IB-7651-01 9 86518595 86518595 C T KIF27 Missense_Mutation p.A280T 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 86518816 86518816 C T KIF27 Missense_Mutation p.R206K 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 9 86559841 86559841 C T C9orf64 Missense_Mutation p.E221K 0.16 tolerated(0.2) probably_damaging(0.938) TCGA-IB-7651-01 9 86585163 86585163 C G HNRNPK Missense_Mutation p.E425D 0.15 tolerated(0.08) possibly_damaging(0.863) TCGA-IB-7651-01 9 86955505 86955505 C A SLC28A3 Missense_Mutation p.S15I 0.18 tolerated(0.16) benign(0.074) TCGA-IB-7651-01 9 87285823 87285823 G A NTRK2 Missense_Mutation p.A54T 0.06 tolerated(0.4) benign(0.106) TCGA-IB-7651-01 9 87338493 87338493 C T NTRK2 Missense_Mutation p.P197S 0.10 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 9 87339252 87339252 T G NTRK2 Silent p.S278S 0.16 TCGA-IB-7651-01 9 87482309 87482309 C T NTRK2 Silent p.Y532Y 0.15 TCGA-IB-7651-01 9 88284449 88284449 T G AGTPBP1 Missense_Mutation p.M205L 0.18 tolerated(1) benign(0.002) TCGA-IB-7651-01 9 88292495 88292495 C A AGTPBP1 Nonsense_Mutation p.G98* 0.07 TCGA-IB-7651-01 9 88938254 88938254 G A ZCCHC6 Missense_Mutation p.A804V 0.19 tolerated(0.62) benign(0.001) TCGA-IB-7651-01 9 88958032 88958032 G C ZCCHC6 Missense_Mutation p.F348L 0.12 tolerated(0.21) probably_damaging(0.998) TCGA-IB-7651-01 9 90219966 90219966 C T DAPK1 Missense_Mutation p.R54W 0.17 deleterious(0) probably_damaging(0.946) TCGA-IB-7651-01 9 90258300 90258300 C T DAPK1 Missense_Mutation p.R310C 0.14 tolerated(0.11) benign(0.183) TCGA-IB-7651-01 9 90388080 90388080 C T CTSL3P RNA 0.19 TCGA-IB-7651-01 9 90388108 90388108 G A CTSL3P RNA 0.21 TCGA-IB-7651-01 9 90499930 90499930 G A SPATA31E1 Silent p.P176P 0.23 TCGA-IB-7651-01 9 90502006 90502006 G A SPATA31E1 Silent p.P868P 0.16 TCGA-IB-7651-01 9 91083296 91083296 G A SPIN1 Missense_Mutation p.R122Q 0.17 tolerated(1) benign(0.002) TCGA-IB-7651-01 9 91262260 91262260 A G RP13-60M5.2 RNA 0.08 TCGA-IB-7651-01 9 91262358 91262358 C T RP13-60M5.2 RNA 0.08 TCGA-IB-7651-01 9 91607036 91607036 C T C9orf47 3'UTR 0.20 TCGA-IB-7651-01 9 91628262 91628262 C A SHC3 3'UTR 0.24 TCGA-IB-7651-01 9 91964707 91964707 C T SECISBP2 Silent p.D585D 0.13 TCGA-IB-7651-01 9 91972418 91972418 C T SECISBP2 Missense_Mutation p.R736C 0.20 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 91973793 91973793 A G SECISBP2 3'UTR 0.18 TCGA-IB-7651-01 9 91996226 91996226 G A SEMA4D Silent p.G494G 0.15 TCGA-IB-7651-01 9 93375522 93375522 G A DIRAS2 Silent p.C196C 0.18 TCGA-IB-7651-01 9 93375869 93375869 C T DIRAS2 Missense_Mutation p.A81T 0.08 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 93606436 93606436 G A SYK Missense_Mutation p.A86T 0.15 tolerated(0.3) probably_damaging(0.922) TCGA-IB-7651-01 9 93650131 93650131 T C SYK Missense_Mutation p.L561S 0.18 tolerated(0.11) probably_damaging(1) TCGA-IB-7651-01 9 93978386 93978386 G A AUH Silent p.V299V 0.17 TCGA-IB-7651-01 9 93979605 93979605 G T AUH Missense_Mutation p.P283H 0.07 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 9 94172259 94172259 G A NFIL3 Missense_Mutation p.S253F 0.19 deleterious(0.04) possibly_damaging(0.639) TCGA-IB-7651-01 9 94486406 94486406 C T ROR2 Silent p.K790K 0.16 TCGA-IB-7651-01 9 94486500 94486500 G A ROR2 Missense_Mutation p.A759V 0.15 tolerated(0.22) benign(0.043) TCGA-IB-7651-01 9 94486503 94486503 G A ROR2 Missense_Mutation p.S758L 0.15 deleterious(0.01) possibly_damaging(0.765) TCGA-IB-7651-01 9 94812267 94812267 C T SPTLC1 Missense_Mutation p.G288E 0.18 deleterious(0) probably_damaging(0.975) TCGA-IB-7651-01 9 94842364 94842364 C T SPTLC1 Missense_Mutation p.A121T 0.17 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 9 95019019 95019019 G A IARS Missense_Mutation p.R694W 0.16 deleterious(0) possibly_damaging(0.832) TCGA-IB-7651-01 9 95032245 95032245 T C IARS Missense_Mutation p.Y409C 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 9 95069174 95069174 T G NOL8 Missense_Mutation p.K940T 0.20 deleterious(0) benign(0.238) TCGA-IB-7651-01 9 95073540 95073540 T C NOL8 Missense_Mutation p.D787G 0.20 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 9 95078044 95078044 A G NOL8 Missense_Mutation p.L288S 0.12 tolerated(0.16) benign(0.044) TCGA-IB-7651-01 9 95258494 95258494 G A ECM2 3'UTR 0.19 TCGA-IB-7651-01 9 95277420 95277420 C A ECM2 Nonsense_Mutation p.E183* 0.23 TCGA-IB-7651-01 9 95284865 95284865 A G ECM2 Missense_Mutation p.V95A 0.09 deleterious(0) probably_damaging(0.949) TCGA-IB-7651-01 9 95298215 95298215 C T ECM2 Intron 0.09 TCGA-IB-7651-01 9 95481113 95481113 C A BICD2 Missense_Mutation p.S605I 0.22 tolerated(0.11) possibly_damaging(0.647) TCGA-IB-7651-01 9 95609118 95609118 G T ZNF484 Missense_Mutation p.L653I 0.09 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 9 95610117 95610117 G A ZNF484 Missense_Mutation p.R320C 0.17 deleterious(0.03) benign(0) TCGA-IB-7651-01 9 95947834 95947834 C T WNK2 Missense_Mutation p.T208M 0.16 unknown(0) TCGA-IB-7651-01 9 96031161 96031161 G A WNK2 Missense_Mutation p.R1358H 0.13 unknown(0) TCGA-IB-7651-01 9 96051635 96051635 G A WNK2 Silent p.S1570S 0.09 TCGA-IB-7651-01 9 96061420 96061420 G A WNK2 Missense_Mutation p.A2035T 0.11 unknown(0) TCGA-IB-7651-01 9 96070844 96070844 C A WNK2 Missense_Mutation p.A2202D 0.19 unknown(0) TCGA-IB-7651-01 9 96233472 96233472 G A FAM120A Missense_Mutation p.R175K 0.18 tolerated(0.12) benign(0.12) TCGA-IB-7651-01 9 96278353 96278353 C T FAM120A Missense_Mutation p.T407M 0.14 tolerated(0.15) possibly_damaging(0.522) TCGA-IB-7651-01 9 96318839 96318839 A - FAM120A Frame_Shift_Del p.K818Rfs*18 0.17 TCGA-IB-7651-01 9 96392276 96392276 G A PHF2 Silent p.E41E 0.14 TCGA-IB-7651-01 9 96429501 96429501 C T PHF2 Missense_Mutation p.A776V 0.14 deleterious(0.04) unknown(0) TCGA-IB-7651-01 9 96435918 96435918 C T PHF2 Silent p.S800S 0.16 TCGA-IB-7651-01 9 96846893 96846893 C T PTPDC1 Silent p.T27T 0.20 TCGA-IB-7651-01 9 96846909 96846909 C T PTPDC1 Missense_Mutation p.R33W 0.18 tolerated_low_confidence(0.09) benign(0.057) TCGA-IB-7651-01 9 96859904 96859904 C A PTPDC1 Missense_Mutation p.D350E 0.05 tolerated(0.07) benign(0.236) TCGA-IB-7651-01 9 96860214 96860214 G A PTPDC1 Missense_Mutation p.E454K 0.15 tolerated(0.28) benign(0.008) TCGA-IB-7651-01 9 97081272 97081272 C A NUTM2F Missense_Mutation p.Q582H 0.16 deleterious(0.02) possibly_damaging(0.525) TCGA-IB-7651-01 9 97220650 97220650 C T HIATL1 Silent p.G391G 0.16 TCGA-IB-7651-01 9 97321313 97321313 C A FBP2 Missense_Mutation p.E309D 0.17 tolerated(0.29) benign(0.145) TCGA-IB-7651-01 9 97563133 97563133 C A C9orf3 Missense_Mutation p.P405T 0.13 deleterious(0) probably_damaging(0.973) TCGA-IB-7651-01 9 977109 977109 C T DMRT3 Silent p.G36G 0.08 TCGA-IB-7651-01 9 97879632 97879632 G A FANCC Missense_Mutation p.P346L 0.13 tolerated(0.07) probably_damaging(0.959) TCGA-IB-7651-01 9 98212127 98212127 G T PTCH1 Missense_Mutation p.P1182H 0.21 deleterious(0) possibly_damaging(0.647) TCGA-IB-7651-01 9 98239123 98239123 G T PTCH1 Missense_Mutation p.A507D 0.14 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 9 98669505 98669505 C T ERCC6L2 Missense_Mutation p.A258V 0.19 tolerated(0.51) benign(0.098) TCGA-IB-7651-01 9 98997675 98997675 C A HSD17B3 3'UTR 0.18 TCGA-IB-7651-01 9 98997811 98997811 G A HSD17B3 Silent p.S288S 0.14 TCGA-IB-7651-01 9 99150512 99150512 G A ZNF367 3'UTR 0.11 TCGA-IB-7651-01 9 99266070 99266070 G A CDC14B Missense_Mutation p.L488F 0.19 tolerated(0.71) benign(0.002) TCGA-IB-7651-01 9 99404096 99404096 A C AAED1 Missense_Mutation p.L209R 0.18 deleterious(0.03) possibly_damaging(0.791) TCGA-IB-7651-01 9 99521177 99521177 T C ZNF510 Missense_Mutation p.I645M 0.18 tolerated(0.15) probably_damaging(0.971) TCGA-IB-7651-01 9 99580223 99580223 T G ZNF782 Missense_Mutation p.K694N 0.23 deleterious(0) probably_damaging(0.94) TCGA-IB-7651-01 9 99581465 99581465 G T ZNF782 Missense_Mutation p.F280L 0.17 tolerated(0.15) probably_damaging(0.996) TCGA-IB-7651-01 9 99581773 99581773 C T ZNF782 Missense_Mutation p.G178S 0.15 tolerated(0.11) benign(0.002) TCGA-IB-7651-01 9 99799653 99799653 C A CTSV Missense_Mutation p.G93C 0.13 deleterious(0) benign(0.353) TCGA-IB-7651-01 X 100104325 100104325 C A NOX1 Missense_Mutation p.G463C 0.26 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 X 100117559 100117559 C T NOX1 Missense_Mutation p.V165M 0.21 tolerated(0.26) benign(0.213) TCGA-IB-7651-01 X 100503249 100503249 G A DRP2 Missense_Mutation p.S475N 0.27 deleterious(0) benign(0.428) TCGA-IB-7651-01 X 100615114 100615114 G A BTK Silent p.N267N 0.24 TCGA-IB-7651-01 X 100630208 100630208 G A BTK Missense_Mutation p.P22L 0.25 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 X 100871474 100871474 T C ARMCX6 Missense_Mutation p.D46G 0.17 tolerated(0.17) benign(0.004) TCGA-IB-7651-01 X 100911186 100911186 G A ARMCX2 Silent p.G463G 0.23 TCGA-IB-7651-01 X 100911224 100911224 C T ARMCX2 Missense_Mutation p.A451T 0.25 tolerated(0.06) possibly_damaging(0.861) TCGA-IB-7651-01 X 101139427 101139427 A C ZMAT1 Silent p.T324T 0.24 TCGA-IB-7651-01 X 101141638 101141638 G A ZMAT1 Missense_Mutation p.R191W 0.20 tolerated(0.08) benign(0.115) TCGA-IB-7651-01 X 101141795 101141795 C T ZMAT1 Intron 0.19 TCGA-IB-7651-01 X 101152901 101152901 G T ZMAT1 Missense_Mutation p.L149M 0.26 tolerated(0.05) benign(0.232) TCGA-IB-7651-01 X 101408859 101408859 C T BEX5 3'UTR 0.10 TCGA-IB-7651-01 X 101615388 101615388 C A NXF2B 3'UTR 0.15 TCGA-IB-7651-01 X 10180547 10180547 C T CLCN4 Missense_Mutation p.A477V 0.18 deleterious(0) probably_damaging(0.983) TCGA-IB-7651-01 X 101822134 101822134 T C NXF4 RNA 0.31 TCGA-IB-7651-01 X 101857630 101857630 G T ARMCX5 Missense_Mutation p.W187C 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 X 101857782 101857782 G A ARMCX5 Missense_Mutation p.G238E 0.18 tolerated(0.69) benign(0.041) TCGA-IB-7651-01 X 101909574 101909574 C T GPRASP1 Missense_Mutation p.L245F 0.20 tolerated(0.7) benign(0.005) TCGA-IB-7651-01 X 101912242 101912242 G A GPRASP1 Missense_Mutation p.S1134N 0.22 tolerated(0.13) benign(0.134) TCGA-IB-7651-01 X 101969867 101969867 G A GPRASP2 Missense_Mutation p.A24T 0.24 tolerated(0.22) benign(0.009) TCGA-IB-7651-01 X 101970438 101970438 C T GPRASP2 Missense_Mutation p.A214V 0.22 tolerated(0.06) benign(0.007) TCGA-IB-7651-01 X 101970883 101970883 G T GPRASP2 Missense_Mutation p.L362F 0.21 tolerated(0.26) possibly_damaging(0.59) TCGA-IB-7651-01 X 102508483 102508483 T A TCEAL8 3'UTR 0.15 TCGA-IB-7651-01 X 103294830 103294830 T A H2BFM Missense_Mutation p.I96N 0.23 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 X 103295409 103295409 C T H2BFM Missense_Mutation p.A148V 0.26 tolerated(0.19) possibly_damaging(0.657) TCGA-IB-7651-01 X 103499510 103499510 G A ESX1 Silent p.Y7Y 0.23 TCGA-IB-7651-01 X 10417463 10417463 A C MID1 Missense_Mutation p.I650S 0.24 deleterious(0) probably_damaging(0.949) TCGA-IB-7651-01 X 10427733 10427733 T A MID1 Missense_Mutation p.N467I 0.22 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 X 104440202 104440202 C T IL1RAPL2 Missense_Mutation p.A43V 0.11 tolerated(1) benign(0.023) TCGA-IB-7651-01 X 104464827 104464827 T C TEX13A Silent p.L85L 0.27 TCGA-IB-7651-01 X 104999178 104999178 G T IL1RAPL2 Missense_Mutation p.K400N 0.23 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 X 105187998 105187998 G A NRK Missense_Mutation p.A1343T 0.33 deleterious(0.03) probably_damaging(0.995) TCGA-IB-7651-01 X 105189929 105189929 A G NRK Missense_Mutation p.I1376M 0.26 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-IB-7651-01 X 105279214 105279214 C T SERPINA7 Missense_Mutation p.S262N 0.23 tolerated(0.36) benign(0.01) TCGA-IB-7651-01 X 105280503 105280503 C A SERPINA7 Missense_Mutation p.G183W 0.25 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 X 105280711 105280711 C T SERPINA7 Silent p.Q113Q 0.23 TCGA-IB-7651-01 X 106016155 106016155 T G RNF128 Missense_Mutation p.I166S 0.22 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 X 106016311 106016311 T G RNF128 Missense_Mutation p.I218S 0.21 deleterious(0) possibly_damaging(0.649) TCGA-IB-7651-01 X 106236586 106236586 G T MORC4 Missense_Mutation p.A61D 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 X 106765713 106765713 C A FRMPD3 Missense_Mutation p.R12S 0.16 tolerated_low_confidence(0.23) benign(0.004) TCGA-IB-7651-01 X 106957916 106957916 T G TSC22D3 Missense_Mutation p.I146L 0.20 deleterious(0.02) probably_damaging(0.966) TCGA-IB-7651-01 X 107084366 107084366 T C MID2 Silent p.C157C 0.21 TCGA-IB-7651-01 X 107160956 107160956 C T MID2 Silent p.A474A 0.22 TCGA-IB-7651-01 X 107167644 107167644 C T MID2 Missense_Mutation p.L503F 0.22 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 X 107224738 107224738 C T TEX13B Missense_Mutation p.A171T 0.13 tolerated(0.06) possibly_damaging(0.693) TCGA-IB-7651-01 X 107418934 107418934 G A COL4A6 Missense_Mutation p.S928L 0.22 benign(0.32) TCGA-IB-7651-01 X 107423784 107423784 G A COL4A6 Missense_Mutation p.P699S 0.27 possibly_damaging(0.722) TCGA-IB-7651-01 X 107434631 107434631 C A COL4A6 Missense_Mutation p.G439V 0.18 unknown(0) TCGA-IB-7651-01 X 107936017 107936017 C A COL4A5 Missense_Mutation p.P1523H 0.23 probably_damaging(1) TCGA-IB-7651-01 X 107978100 107978100 T A IRS4 Missense_Mutation p.N492I 0.23 deleterious_low_confidence(0) possibly_damaging(0.806) TCGA-IB-7651-01 X 107979104 107979104 G A IRS4 Silent p.S157S 0.22 TCGA-IB-7651-01 X 108628419 108628419 C A GUCY2F Missense_Mutation p.G1017C 0.19 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 X 109416479 109416479 G A TMEM164 Missense_Mutation p.E232K 0.22 tolerated(0.17) benign(0.362) TCGA-IB-7651-01 X 109695829 109695829 G T RGAG1 Missense_Mutation p.A662S 0.24 tolerated(0.14) benign(0.053) TCGA-IB-7651-01 X 109696078 109696078 C T RGAG1 Nonsense_Mutation p.Q745* 0.22 TCGA-IB-7651-01 X 110954908 110954908 G A ALG13 Silent p.V280V 0.22 TCGA-IB-7651-01 X 111090508 111090508 G A TRPC5 Missense_Mutation p.R512C 0.22 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 X 111097109 111097109 T C TRPC5 Missense_Mutation p.T376A 0.04 tolerated(0.53) possibly_damaging(0.701) TCGA-IB-7651-01 X 111097131 111097131 G T TRPC5 Silent p.I368I 0.12 TCGA-IB-7651-01 X 111155577 111155577 G A TRPC5 Missense_Mutation p.P281L 0.23 tolerated(0.28) benign(0.005) TCGA-IB-7651-01 X 11130162 11130162 G T HCCS 5'UTR 0.21 TCGA-IB-7651-01 X 11157333 11157333 G T ARHGAP6 Missense_Mutation p.L859M 0.22 tolerated_low_confidence(0.1) benign(0.332) TCGA-IB-7651-01 X 11160378 11160378 G A ARHGAP6 Silent p.S744S 0.20 TCGA-IB-7651-01 X 11161817 11161817 G A ARHGAP6 Intron 0.18 TCGA-IB-7651-01 X 112048243 112048243 G A AMOT Nonsense_Mutation p.R570* 0.21 TCGA-IB-7651-01 X 112054512 112054512 A G AMOT Missense_Mutation p.I501T 0.20 unknown(0) TCGA-IB-7651-01 X 11207077 11207077 G A ARHGAP6 Missense_Mutation p.P283L 0.06 deleterious(0) probably_damaging(0.963) TCGA-IB-7651-01 X 114404869 114404869 T G LRCH2 Missense_Mutation p.T331P 0.18 tolerated(0.2) probably_damaging(0.998) TCGA-IB-7651-01 X 117032717 117032717 G A KLHL13 3'UTR 0.28 TCGA-IB-7651-01 X 117676803 117676803 C A DOCK11 Missense_Mutation p.S73Y 0.04 deleterious(0.01) possibly_damaging(0.602) TCGA-IB-7651-01 X 11783890 11783890 G A MSL3 Intron 0.20 TCGA-IB-7651-01 X 118112410 118112410 G A LONRF3 Missense_Mutation p.R307H 0.19 deleterious(0.01) probably_damaging(0.982) TCGA-IB-7651-01 X 118223067 118223067 C A KIAA1210 Missense_Mutation p.S709I 0.24 deleterious(0.03) probably_damaging(0.944) TCGA-IB-7651-01 X 118585896 118585896 G T SLC25A43 Intron 0.25 TCGA-IB-7651-01 X 118723235 118723235 C T NKRF 3'UTR 0.26 TCGA-IB-7651-01 X 118724025 118724025 G A NKRF Silent p.L470L 0.27 TCGA-IB-7651-01 X 118972012 118972012 G T UPF3B Missense_Mutation p.P337H 0.10 tolerated(0.06) possibly_damaging(0.621) TCGA-IB-7651-01 X 119005851 119005851 T G NDUFA1 5'UTR 0.24 TCGA-IB-7651-01 X 119054470 119054470 G T AKAP14 Splice_Site p.X165_splice 0.20 TCGA-IB-7651-01 X 119068457 119068457 G A NKAP Missense_Mutation p.S246L 0.18 tolerated(0.18) unknown(0) TCGA-IB-7651-01 X 119438305 119438305 C T TMEM255A Missense_Mutation p.V34M 0.25 tolerated(0.07) probably_damaging(0.999) TCGA-IB-7651-01 X 119668403 119668403 C T CUL4B Silent p.L751L 0.19 TCGA-IB-7651-01 X 119674407 119674407 C A CUL4B Missense_Mutation p.S503I 0.21 tolerated(0.2) benign(0.103) TCGA-IB-7651-01 X 120009228 120009228 C A CT47B1 Missense_Mutation p.E99D 0.19 tolerated(0.12) benign(0.059) TCGA-IB-7651-01 X 120182660 120182660 C T GLUD2 Silent p.V374V 0.24 TCGA-IB-7651-01 X 120182956 120182956 G A GLUD2 Missense_Mutation p.S473N 0.23 deleterious(0.02) probably_damaging(0.979) TCGA-IB-7651-01 X 122318342 122318342 C A GRIA3 5'UTR 0.28 TCGA-IB-7651-01 X 122755365 122755365 C A THOC2 Missense_Mutation p.A1287S 0.26 tolerated(0.43) benign(0.05) TCGA-IB-7651-01 X 122829989 122829989 T C THOC2 Silent p.K161K 0.26 TCGA-IB-7651-01 X 123505243 123505243 G A SH2D1A 3'UTR 0.18 TCGA-IB-7651-01 X 123514421 123514421 G T TENM1 Missense_Mutation p.H2722N 0.19 deleterious(0.02) possibly_damaging(0.482) TCGA-IB-7651-01 X 123526164 123526164 T C TENM1 Missense_Mutation p.D1809G 0.24 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 X 123554207 123554207 G T TENM1 Missense_Mutation p.L1646I 0.19 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 X 125299095 125299095 G A DCAF12L2 Silent p.S271S 0.22 TCGA-IB-7651-01 X 125299102 125299102 G A DCAF12L2 Missense_Mutation p.A269V 0.21 tolerated(0.06) possibly_damaging(0.728) TCGA-IB-7651-01 X 127186243 127186243 C T ACTRT1 5'UTR 0.12 TCGA-IB-7651-01 X 12735057 12735057 G A FRMPD4 Missense_Mutation p.A827T 0.24 tolerated(0.21) benign(0.005) TCGA-IB-7651-01 X 128582342 128582342 C A SMARCA1 Nonsense_Mutation p.E1037* 0.24 TCGA-IB-7651-01 X 128691392 128691392 C T OCRL Missense_Mutation p.A110V 0.22 deleterious(0) benign(0.001) TCGA-IB-7651-01 X 129045772 129045772 G A UTP14A Missense_Mutation p.A138T 0.23 deleterious(0.02) benign(0.009) TCGA-IB-7651-01 X 129060260 129060260 A G UTP14A Missense_Mutation p.N663S 0.27 tolerated(0.13) benign(0.087) TCGA-IB-7651-01 X 129263959 129263959 G A AIFM1 Missense_Mutation p.P586S 0.23 tolerated(0.34) benign(0.058) TCGA-IB-7651-01 X 129318474 129318474 G T RAB33A Missense_Mutation p.Q158H 0.19 tolerated(0.2) benign(0.005) TCGA-IB-7651-01 X 12937820 12937820 C A TLR8 Missense_Mutation p.P221T 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 X 129546425 129546425 G A RBMX2 Missense_Mutation p.R191H 0.17 tolerated(0.3) benign(0.003) TCGA-IB-7651-01 X 129771328 129771328 G T ENOX2 Missense_Mutation p.L425I 0.25 deleterious(0.01) benign(0.248) TCGA-IB-7651-01 X 130409168 130409168 C A IGSF1 Missense_Mutation p.D1098Y 0.24 tolerated(0.49) probably_damaging(0.997) TCGA-IB-7651-01 X 130412536 130412536 A C IGSF1 Missense_Mutation p.L652R 0.25 deleterious(0) probably_damaging(0.96) TCGA-IB-7651-01 X 130415855 130415855 A G IGSF1 Missense_Mutation p.I437T 0.21 deleterious(0.04) possibly_damaging(0.772) TCGA-IB-7651-01 X 131228097 131228097 C T FRMD7 Missense_Mutation p.A119T 0.18 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 X 131348212 131348212 G T RAP2C Missense_Mutation p.T179N 0.19 tolerated(0.06) benign(0.021) TCGA-IB-7651-01 X 132445370 132445370 G A GPC4 Missense_Mutation p.P265S 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-IB-7651-01 X 132833993 132833993 G T GPC3 Missense_Mutation p.L389I 0.21 tolerated(0.41) benign(0.145) TCGA-IB-7651-01 X 133700753 133700753 G A PLAC1 5'UTR 0.24 TCGA-IB-7651-01 X 134305013 134305013 C T CT55 Missense_Mutation p.G28D 0.21 tolerated(0.53) benign(0.003) TCGA-IB-7651-01 X 134711279 134711279 C T DDX26B Silent p.G645G 0.09 TCGA-IB-7651-01 X 135067752 135067752 C A SLC9A6 Missense_Mutation p.L31I 0.24 tolerated_low_confidence(0.06) benign(0.11) TCGA-IB-7651-01 X 135095513 135095513 G A SLC9A6 Missense_Mutation p.V385I 0.22 deleterious(0) possibly_damaging(0.793) TCGA-IB-7651-01 X 135326862 135326862 G A MAP7D3 Nonsense_Mutation p.R116* 0.04 TCGA-IB-7651-01 X 135328253 135328253 C T MAP7D3 Missense_Mutation p.R75H 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 X 135429074 135429074 C T GPR112 Missense_Mutation p.T1070I 0.22 deleterious(0) probably_damaging(0.941) TCGA-IB-7651-01 X 135429170 135429170 C T GPR112 Missense_Mutation p.A1102V 0.21 tolerated(0.06) benign(0.044) TCGA-IB-7651-01 X 135430725 135430725 A - GPR112 Frame_Shift_Del p.N1622Tfs*12 0.10 TCGA-IB-7651-01 X 135581769 135581769 T G HTATSF1 Missense_Mutation p.F67V 0.20 tolerated(0.07) probably_damaging(0.996) TCGA-IB-7651-01 X 135581775 135581775 G A HTATSF1 Missense_Mutation p.A69T 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-IB-7651-01 X 135593823 135593823 A G HTATSF1 Missense_Mutation p.D640G 0.23 tolerated_low_confidence(0.06) unknown(0) TCGA-IB-7651-01 X 135632947 135632947 C T VGLL1 Missense_Mutation p.R219C 0.11 tolerated(0.18) possibly_damaging(0.676) TCGA-IB-7651-01 X 135862894 135862894 G A ARHGEF6 Missense_Mutation p.P50S 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.846) TCGA-IB-7651-01 X 13618094 13618094 A G EGFL6 Missense_Mutation p.D94G 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-IB-7651-01 X 13645136 13645136 G T EGFL6 Missense_Mutation p.G432V 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 X 13727055 13727055 G A RAB9A Missense_Mutation p.A64T 0.24 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 X 13727191 13727191 C T RAB9A Missense_Mutation p.A109V 0.20 deleterious(0.03) possibly_damaging(0.904) TCGA-IB-7651-01 X 13767603 13767603 C T OFD1 Silent p.L296L 0.23 TCGA-IB-7651-01 X 138727816 138727816 G A MCF2 Nonsense_Mutation p.Q48* 0.19 TCGA-IB-7651-01 X 140270770 140270770 T C LDOC1 Missense_Mutation p.Y146C 0.19 deleterious_low_confidence(0) unknown(0) TCGA-IB-7651-01 X 14038477 14038477 G T GEMIN8 Missense_Mutation p.S64R 0.22 tolerated(0.12) possibly_damaging(0.822) TCGA-IB-7651-01 X 140969366 140969366 G A MAGEC3 Silent p.E231E 0.21 TCGA-IB-7651-01 X 140985426 140985426 G A MAGEC3 Silent p.R580R 0.22 TCGA-IB-7651-01 X 140994053 140994053 C A MAGEC1 Missense_Mutation p.P288H 0.28 deleterious_low_confidence(0.04) possibly_damaging(0.893) TCGA-IB-7651-01 X 140994195 140994195 G T MAGEC1 Missense_Mutation p.Q335H 0.23 deleterious_low_confidence(0) benign(0.216) TCGA-IB-7651-01 X 140994977 140994977 C T MAGEC1 Missense_Mutation p.P596L 0.22 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-IB-7651-01 X 140995885 140995885 G T MAGEC1 Nonsense_Mutation p.E899* 0.20 TCGA-IB-7651-01 X 140995998 140995998 G A MAGEC1 Silent p.T936T 0.20 TCGA-IB-7651-01 X 140996169 140996169 C T MAGEC1 Silent p.G993G 0.21 TCGA-IB-7651-01 X 142716967 142716967 T C SLITRK4 Missense_Mutation p.H653R 0.20 tolerated(0.75) benign(0.057) TCGA-IB-7651-01 X 142717676 142717676 T C SLITRK4 Missense_Mutation p.K417E 0.24 deleterious(0.04) benign(0.024) TCGA-IB-7651-01 X 142803770 142803770 C T SPANXN2 5'UTR 0.22 TCGA-IB-7651-01 X 144337403 144337403 G T SPANXN1 3'UTR 0.26 TCGA-IB-7651-01 X 144906288 144906288 G A SLITRK2 Missense_Mutation p.R782K 0.04 tolerated(0.26) benign(0.005) TCGA-IB-7651-01 X 14548183 14548183 A G GLRA2 Missense_Mutation p.N2D 0.22 tolerated_low_confidence(0.61) benign(0.012) TCGA-IB-7651-01 X 14625300 14625300 C A GLRA2 Missense_Mutation p.P209T 0.21 deleterious(0) possibly_damaging(0.72) TCGA-IB-7651-01 X 146295005 146295005 C A MIR513A1 RNA 0.19 TCGA-IB-7651-01 X 147024736 147024736 G A FMR1 Missense_Mutation p.R454H 0.21 deleterious(0) probably_damaging(0.987) TCGA-IB-7651-01 X 147026464 147026464 C A FMR1 Missense_Mutation p.A516D 0.08 deleterious(0) probably_damaging(0.992) TCGA-IB-7651-01 X 147063094 147063094 C T FMR1NB Missense_Mutation p.R58W 0.22 deleterious(0.01) possibly_damaging(0.835) TCGA-IB-7651-01 X 147744092 147744092 C T AFF2 Nonsense_Mutation p.Q282* 0.24 TCGA-IB-7651-01 X 148035155 148035155 C T AFF2 Silent p.S481S 0.11 TCGA-IB-7651-01 X 148049205 148049205 C T AFF2 Missense_Mutation p.H1084Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 X 148069061 148069061 C T AFF2 Missense_Mutation p.A1263V 0.17 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 X 148072854 148072854 T G AFF2 Missense_Mutation p.L1310V 0.23 deleterious(0) possibly_damaging(0.464) TCGA-IB-7651-01 X 148627391 148627391 T G CXorf40A Missense_Mutation p.L72R 0.18 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 X 148797891 148797891 C A MAGEA11 Missense_Mutation p.L249M 0.20 deleterious(0.04) probably_damaging(0.909) TCGA-IB-7651-01 X 14883249 14883249 A G FANCB Silent p.Y128Y 0.29 TCGA-IB-7651-01 X 149013843 149013843 G A MAGEA8 Missense_Mutation p.G266D 0.22 tolerated(0.28) benign(0.232) TCGA-IB-7651-01 X 149100935 149100935 C T CXorf40B Missense_Mutation p.D102N 0.08 tolerated(0.17) benign(0.002) TCGA-IB-7651-01 X 149101878 149101878 A C CXorf40B Missense_Mutation p.L72R 0.07 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 X 14929376 14929376 C A MOSPD2 Missense_Mutation p.S240R 0.18 deleterious(0.01) benign(0.083) TCGA-IB-7651-01 X 149638350 149638350 G A MAMLD1 Missense_Mutation p.V144M 0.26 tolerated(0.93) benign(0.029) TCGA-IB-7651-01 X 149809786 149809786 C A MTM1 Nonsense_Mutation p.C191* 0.23 TCGA-IB-7651-01 X 149924229 149924229 C A MTMR1 Silent p.P575P 0.25 TCGA-IB-7651-01 X 150832667 150832667 C A PASD1 Missense_Mutation p.F306L 0.22 tolerated(0.63) benign(0.327) TCGA-IB-7651-01 X 150911635 150911635 G A CNGA2 Silent p.Q220Q 0.27 TCGA-IB-7651-01 X 151092439 151092439 C T MAGEA4 Silent p.D101D 0.22 TCGA-IB-7651-01 X 151124015 151124015 G A GABRE Missense_Mutation p.T321I 0.24 deleterious(0) possibly_damaging(0.874) TCGA-IB-7651-01 X 151129810 151129810 G A GABRE Silent p.L197L 0.13 TCGA-IB-7651-01 X 151283580 151283580 G A RP11-1007I13.4 RNA 0.23 TCGA-IB-7651-01 X 151560698 151560698 C T GABRA3 Intron 0.21 TCGA-IB-7651-01 X 151818234 151818234 T G GABRQ Missense_Mutation p.F214V 0.20 deleterious(0.04) benign(0.186) TCGA-IB-7651-01 X 151869413 151869413 G A MAGEA6 Missense_Mutation p.E35K 0.11 tolerated(0.22) benign(0.143) TCGA-IB-7651-01 X 151896655 151896655 C T MAGEA12 3'Flank 0.21 TCGA-IB-7651-01 X 151935444 151935444 A C MAGEA3 Missense_Mutation p.D241E 0.22 tolerated(1) benign(0.001) TCGA-IB-7651-01 X 151996394 151996394 G A CETN2 Silent p.S170S 0.12 TCGA-IB-7651-01 X 152037363 152037363 C A NSDHL Missense_Mutation p.F275L 0.24 deleterious(0) probably_damaging(0.951) TCGA-IB-7651-01 X 152159032 152159032 C T PNMA5 Missense_Mutation p.A371T 0.24 tolerated(0.23) benign(0.046) TCGA-IB-7651-01 X 152225354 152225354 A C PNMA3 5'UTR 0.21 TCGA-IB-7651-01 X 152225374 152225374 T C PNMA3 5'UTR 0.21 TCGA-IB-7651-01 X 152483208 152483208 C T MAGEA1 5'UTR 0.09 TCGA-IB-7651-01 X 15276992 15276992 C A ASB9 Missense_Mutation p.S57I 0.24 deleterious(0.01) possibly_damaging(0.697) TCGA-IB-7651-01 X 152811581 152811581 A T ATP2B3 Missense_Mutation p.T318S 0.21 tolerated(0.75) benign(0.002) TCGA-IB-7651-01 X 152937358 152937358 C T PNCK Missense_Mutation p.G214R 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-IB-7651-01 X 152960076 152960076 G A SLC6A8 Silent p.P528P 0.26 TCGA-IB-7651-01 X 15301646 15301646 C T ASB11 Missense_Mutation p.R318Q 0.22 tolerated(0.56) benign(0.01) TCGA-IB-7651-01 X 153032536 153032536 C T PLXNB3 Missense_Mutation p.A108V 0.23 tolerated(0.48) benign(0.009) TCGA-IB-7651-01 X 153032615 153032615 G T PLXNB3 Missense_Mutation p.Q134H 0.27 tolerated(0.13) benign(0.413) TCGA-IB-7651-01 X 153032912 153032912 G A PLXNB3 Silent p.G233G 0.21 TCGA-IB-7651-01 X 153037356 153037356 C T PLXNB3 Missense_Mutation p.A875V 0.21 tolerated(0.45) benign(0.012) TCGA-IB-7651-01 X 153038807 153038807 G A PLXNB3 Missense_Mutation p.R1033H 0.18 tolerated(0.73) benign(0.001) TCGA-IB-7651-01 X 153043709 153043709 G A PLXNB3 Intron 0.22 TCGA-IB-7651-01 X 153172136 153172136 C A AVPR2 Missense_Mutation p.S357Y 0.28 deleterious(0) possibly_damaging(0.836) TCGA-IB-7651-01 X 153208501 153208501 C T RENBP Missense_Mutation p.V165I 0.24 tolerated(0.47) benign(0.008) TCGA-IB-7651-01 X 153219959 153219959 G A HCFC1 Silent p.H1297H 0.23 TCGA-IB-7651-01 X 153221812 153221812 C T HCFC1 Missense_Mutation p.G896R 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IB-7651-01 X 153223480 153223480 G A HCFC1 Missense_Mutation p.A675V 0.21 deleterious(0) probably_damaging(0.986) TCGA-IB-7651-01 X 153247784 153247784 G A TMEM187 Missense_Mutation p.A91T 0.26 tolerated(0.4) benign(0.011) TCGA-IB-7651-01 X 153248033 153248033 G A TMEM187 Missense_Mutation p.A174T 0.22 tolerated(0.11) benign(0.029) TCGA-IB-7651-01 X 15339551 15339551 C T PIGA 3'UTR 0.24 TCGA-IB-7651-01 X 153524098 153524098 C T TKTL1 5'UTR 0.19 TCGA-IB-7651-01 X 153558113 153558113 C A TKTL1 3'UTR 0.22 TCGA-IB-7651-01 X 153577155 153577155 G A FLNA 3'UTR 0.18 TCGA-IB-7651-01 X 153580292 153580292 C A FLNA Missense_Mutation p.K2289N 0.23 deleterious(0.03) possibly_damaging(0.862) TCGA-IB-7651-01 X 153588685 153588685 C A FLNA Missense_Mutation p.A1160S 0.23 deleterious(0.04) possibly_damaging(0.61) TCGA-IB-7651-01 X 153590625 153590625 C T FLNA Missense_Mutation p.G881S 0.22 deleterious(0) probably_damaging(0.989) TCGA-IB-7651-01 X 153592400 153592400 C T FLNA Missense_Mutation p.S757N 0.04 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 X 153592426 153592426 G T FLNA Silent p.S748S 0.20 TCGA-IB-7651-01 X 153627922 153627922 G A RPL10 Silent p.Q59Q 0.25 TCGA-IB-7651-01 X 153641878 153641878 T G TAZ Missense_Mutation p.L115W 0.19 deleterious(0) benign(0.366) TCGA-IB-7651-01 X 153663798 153663798 C A ATP6AP1 Missense_Mutation p.L384I 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7651-01 X 153664304 153664304 C T ATP6AP1 3'UTR 0.12 TCGA-IB-7651-01 X 153668321 153668321 G A GDI1 Missense_Mutation p.R141H 0.24 tolerated(0.05) possibly_damaging(0.761) TCGA-IB-7651-01 X 153692584 153692584 C A PLXNA3 Missense_Mutation p.L586M 0.22 tolerated(0.25) possibly_damaging(0.453) TCGA-IB-7651-01 X 153694277 153694277 G A PLXNA3 Splice_Site p.X845_splice 0.22 TCGA-IB-7651-01 X 153695925 153695925 G A PLXNA3 Missense_Mutation p.R1160H 0.20 deleterious(0.05) probably_damaging(0.984) TCGA-IB-7651-01 X 153697552 153697552 G A PLXNA3 Missense_Mutation p.D1530N 0.20 deleterious(0) possibly_damaging(0.857) TCGA-IB-7651-01 X 153698803 153698803 G A PLXNA3 Missense_Mutation p.V1669M 0.11 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 X 153698908 153698908 C T PLXNA3 Missense_Mutation p.R1704C 0.18 deleterious(0) possibly_damaging(0.849) TCGA-IB-7651-01 X 153716401 153716401 C A SLC10A3 Silent p.V293V 0.24 TCGA-IB-7651-01 X 153716810 153716810 G T SLC10A3 Missense_Mutation p.P157H 0.24 deleterious(0.04) probably_damaging(0.999) TCGA-IB-7651-01 X 153927748 153927748 C T GAB3 Missense_Mutation p.S389N 0.19 tolerated(0.19) benign(0.016) TCGA-IB-7651-01 X 15403175 15403175 T G PIR Missense_Mutation p.K275T 0.05 tolerated(0.34) benign(0.038) TCGA-IB-7651-01 X 154113690 154113690 C A H2AFB1 3'UTR 0.24 TCGA-IB-7651-01 X 154156894 154156894 C T F8 Missense_Mutation p.R1724K 0.23 tolerated(0.95) benign(0.018) TCGA-IB-7651-01 X 154175987 154175987 G A F8 Missense_Mutation p.S700L 0.10 tolerated(0.07) benign(0.296) TCGA-IB-7651-01 X 154292396 154292396 G A MTCP1 3'UTR 0.29 TCGA-IB-7651-01 X 154507346 154507346 G A CLIC2 Missense_Mutation p.A197V 0.23 tolerated(0.05) benign(0.174) TCGA-IB-7651-01 X 155255098 155255098 C T WASH6P RNA 0.17 TCGA-IB-7651-01 X 15552432 15552432 C A BMX Missense_Mutation p.L373I 0.23 tolerated(0.08) probably_damaging(0.999) TCGA-IB-7651-01 X 15568034 15568034 C A BMX Missense_Mutation p.L623M 0.21 deleterious(0.01) benign(0.006) TCGA-IB-7651-01 X 15827333 15827333 G A ZRSR2 Missense_Mutation p.G150D 0.23 tolerated(0.05) probably_damaging(0.988) TCGA-IB-7651-01 X 15845283 15845283 A C AP1S2 3'UTR 0.24 TCGA-IB-7651-01 X 1584758 1584758 G A P2RY8 Missense_Mutation p.R232W 0.06 deleterious(0) probably_damaging(0.958) TCGA-IB-7651-01 X 1585098 1585098 G A P2RY8 Silent p.S118S 0.24 TCGA-IB-7651-01 X 16168591 16168591 T G GRPR Missense_Mutation p.F193V 0.25 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 X 16635291 16635291 C T CTPS2 Missense_Mutation p.E510K 0.24 deleterious(0.01) probably_damaging(0.985) TCGA-IB-7651-01 X 16855753 16855753 C T TXLNG Missense_Mutation p.T366I 0.21 deleterious(0.02) possibly_damaging(0.908) TCGA-IB-7651-01 X 1712941 1712941 C T AKAP17A Missense_Mutation p.R196W 0.18 deleterious(0) probably_damaging(0.984) TCGA-IB-7651-01 X 1720497 1720497 C T AKAP17A 3'UTR 0.18 TCGA-IB-7651-01 X 1746651 1746651 A C ASMT Missense_Mutation p.T144P 0.25 tolerated(0.23) possibly_damaging(0.622) TCGA-IB-7651-01 X 17771536 17771536 T G SCML1 3'UTR 0.21 TCGA-IB-7651-01 X 18209204 18209204 C T BEND2 Missense_Mutation p.G402E 0.19 tolerated(1) benign(0) TCGA-IB-7651-01 X 18221838 18221838 G A BEND2 Silent p.F230F 0.22 TCGA-IB-7651-01 X 18646512 18646512 C T CDKL5 Missense_Mutation p.R840C 0.21 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-IB-7651-01 X 18662597 18662597 C A RS1 Nonsense_Mutation p.E159* 0.22 TCGA-IB-7651-01 X 18671647 18671647 G A CDKL5 Missense_Mutation p.A1026T 0.22 deleterious_low_confidence(0) possibly_damaging(0.483) TCGA-IB-7651-01 X 18824540 18824540 C T PPEF1 Missense_Mutation p.A424V 0.26 deleterious(0) possibly_damaging(0.786) TCGA-IB-7651-01 X 18843868 18843868 G A PPEF1 Splice_Site p.X556_splice 0.19 TCGA-IB-7651-01 X 18911709 18911710 - A PHKA2 Frame_Shift_Ins p.Y1201Lfs*2 0.23 TCGA-IB-7651-01 X 18911732 18911732 G T PHKA2 Silent p.A1193A 0.21 TCGA-IB-7651-01 X 19028891 19028891 C T GPR64 Missense_Mutation p.V369I 0.22 tolerated(0.36) benign(0.005) TCGA-IB-7651-01 X 19373539 19373539 C T PDHA1 Missense_Mutation p.R264C 0.22 tolerated(0.11) possibly_damaging(0.759) TCGA-IB-7651-01 X 19379653 19379653 G A MAP3K15 Silent p.D1246D 0.11 TCGA-IB-7651-01 X 19413252 19413252 C T MAP3K15 Missense_Mutation p.G714D 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 X 20074873 20074873 G A MAP7D2 Missense_Mutation p.R137C 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 X 20134917 20134917 G A MAP7D2 Silent p.I27I 0.35 TCGA-IB-7651-01 X 207360 207360 G T PLCXD1 Missense_Mutation p.D104Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 X 2139202 2139202 G A DHRSX Silent p.G291G 0.25 TCGA-IB-7651-01 X 21392988 21392988 C T CNKSR2 5'UTR 0.15 TCGA-IB-7651-01 X 21519642 21519642 C A CNKSR2 Missense_Mutation p.P249H 0.17 deleterious(0) probably_damaging(0.995) TCGA-IB-7651-01 X 21674239 21674239 C T KLHL34 Silent p.P556P 0.18 TCGA-IB-7651-01 X 21675171 21675171 C T KLHL34 Missense_Mutation p.A246T 0.21 tolerated(0.74) benign(0.002) TCGA-IB-7651-01 X 21755811 21755811 A G SMPX Missense_Mutation p.V46A 0.08 tolerated_low_confidence(0.91) benign(0) TCGA-IB-7651-01 X 22129647 22129647 G A PHEX Missense_Mutation p.R381H 0.26 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 X 224168 224168 G A GTPBP6 Missense_Mutation p.T200M 0.27 tolerated(0.15) benign(0.107) TCGA-IB-7651-01 X 23020059 23020059 T G DDX53 Missense_Mutation p.F629V 0.20 deleterious_low_confidence(0.03) benign(0.003) TCGA-IB-7651-01 X 23398084 23398084 C A PTCHD1 Missense_Mutation p.S243Y 0.21 deleterious(0.03) possibly_damaging(0.678) TCGA-IB-7651-01 X 2406797 2406797 G A ZBED1 Missense_Mutation p.A655V 0.26 tolerated_low_confidence(0.55) benign(0.016) TCGA-IB-7651-01 X 2406917 2406917 C T ZBED1 Missense_Mutation p.R615H 0.23 tolerated(0.05) probably_damaging(0.939) TCGA-IB-7651-01 X 2407814 2407814 C T ZBED1 Missense_Mutation p.R316H 0.24 deleterious(0.02) possibly_damaging(0.77) TCGA-IB-7651-01 X 2408449 2408449 C A ZBED1 Missense_Mutation p.Q104H 0.10 tolerated(0.16) benign(0.161) TCGA-IB-7651-01 X 24190912 24190912 C T ZFX Missense_Mutation p.A18V 0.17 tolerated(0.24) benign(0.01) TCGA-IB-7651-01 X 24625913 24625913 C T PCYT1B Missense_Mutation p.A95T 0.29 deleterious(0.03) possibly_damaging(0.598) TCGA-IB-7651-01 X 24732735 24732735 G A POLA1 Silent p.P131P 0.29 TCGA-IB-7651-01 X 26212149 26212149 G T MAGEB6 Missense_Mutation p.Q62H 0.23 deleterious(0.02) probably_damaging(0.992) TCGA-IB-7651-01 X 26212833 26212833 G A MAGEB6 Silent p.S290S 0.23 TCGA-IB-7651-01 X 2707735 2707735 G T XG Missense_Mutation p.G81C 0.15 deleterious(0.03) probably_damaging(0.967) TCGA-IB-7651-01 X 27997045 27997045 G T DCAF8L1 3'UTR 0.19 TCGA-IB-7651-01 X 27998727 27998727 A G DCAF8L1 Missense_Mutation p.V242A 0.20 deleterious(0) possibly_damaging(0.839) TCGA-IB-7651-01 X 2832807 2832807 G A ARSD Intron 0.13 TCGA-IB-7651-01 X 2861177 2861177 G A ARSE Missense_Mutation p.S352L 0.25 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 X 2933300 2933300 C A ARSH Silent p.S210S 0.30 TCGA-IB-7651-01 X 2945456 2945456 G T ARSH Missense_Mutation p.S380I 0.13 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 X 29935582 29935582 T C IL1RAPL1 Silent p.G260G 0.19 TCGA-IB-7651-01 X 30261225 30261225 C T MAGEB4 Missense_Mutation p.R325C 0.23 tolerated(0.06) unknown(0) TCGA-IB-7651-01 X 3030396 3030396 G A ARSF Silent p.E524E 0.06 TCGA-IB-7651-01 X 30327309 30327309 G A NR0B1 Missense_Mutation p.R58W 0.13 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-IB-7651-01 X 30577645 30577645 C T CXorf21 Silent p.L276L 0.19 TCGA-IB-7651-01 X 30686168 30686168 C T GK Silent p.V64V 0.20 TCGA-IB-7651-01 X 30872954 30872954 C A TAB3 Missense_Mutation p.Q276H 0.16 deleterious(0.04) probably_damaging(0.99) TCGA-IB-7651-01 X 31089968 31089968 A G FTHL17 Missense_Mutation p.Y35H 0.11 deleterious(0.02) possibly_damaging(0.875) TCGA-IB-7651-01 X 31525440 31525440 T G DMD Missense_Mutation p.N2783T 0.26 possibly_damaging(0.607) TCGA-IB-7651-01 X 3235453 3235453 C T MXRA5 Missense_Mutation p.R2090H 0.24 deleterious(0.03) possibly_damaging(0.812) TCGA-IB-7651-01 X 3240577 3240577 G T MXRA5 Missense_Mutation p.T1050N 0.19 tolerated(0.14) possibly_damaging(0.462) TCGA-IB-7651-01 X 3241106 3241106 G T MXRA5 Missense_Mutation p.L874I 0.05 tolerated(0.38) benign(0.008) TCGA-IB-7651-01 X 3248806 3248806 C T MXRA5 Missense_Mutation p.S66N 0.22 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 X 3261761 3261761 C A MXRA5 Missense_Mutation p.E38D 0.24 deleterious(0) probably_damaging(0.994) TCGA-IB-7651-01 X 32827617 32827617 A G DMD Silent p.D214D 0.22 TCGA-IB-7651-01 X 32834629 32834629 G T DMD Missense_Mutation p.S162R 0.29 probably_damaging(0.938) TCGA-IB-7651-01 X 32841471 32841471 C T DMD Missense_Mutation p.V100I 0.22 possibly_damaging(0.48) TCGA-IB-7651-01 X 33357388 33357388 C A DMD 5'UTR 0.20 TCGA-IB-7651-01 X 33357456 33357456 G A DMD 5'UTR 0.18 TCGA-IB-7651-01 X 34648378 34648378 G A TMEM47 3'UTR 0.19 TCGA-IB-7651-01 X 34961295 34961295 C T FAM47B Missense_Mutation p.A116V 0.22 deleterious(0.04) possibly_damaging(0.551) TCGA-IB-7651-01 X 34961432 34961432 G A FAM47B Missense_Mutation p.A162T 0.22 tolerated(1) benign(0.016) TCGA-IB-7651-01 X 35820491 35820491 A C MAGEB16 Missense_Mutation p.S60R 0.21 tolerated(0.15) benign(0.15) TCGA-IB-7651-01 X 35820969 35820969 G A MAGEB16 Missense_Mutation p.R219H 0.26 tolerated(0.22) benign(0.175) TCGA-IB-7651-01 X 35969425 35969425 G T CXorf22 Missense_Mutation p.E278D 0.23 deleterious(0.01) possibly_damaging(0.873) TCGA-IB-7651-01 X 35989849 35989849 G A CXorf22 Missense_Mutation p.R706K 0.05 tolerated(0.3) benign(0.023) TCGA-IB-7651-01 X 35993429 35993429 G A CXorf22 Missense_Mutation p.S807N 0.20 tolerated(0.18) benign(0.05) TCGA-IB-7651-01 X 36083821 36083821 G A CHDC2 Missense_Mutation p.A2T 0.17 deleterious(0) probably_damaging(0.996) TCGA-IB-7651-01 X 37028071 37028071 C T FAM47C Silent p.L530L 0.26 TCGA-IB-7651-01 X 37932929 37932929 C T SYTL5 Missense_Mutation p.H178Y 0.11 tolerated(1) benign(0.066) TCGA-IB-7651-01 X 37969635 37969635 A C SYTL5 Missense_Mutation p.D521A 0.26 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 X 38020292 38020292 G A SRPX Silent p.G223G 0.11 TCGA-IB-7651-01 X 38664233 38664233 C T MID1IP1 Missense_Mutation p.H12Y 0.18 tolerated(0.1) benign(0.065) TCGA-IB-7651-01 X 39931785 39931785 G T BCOR Silent p.T938T 0.12 TCGA-IB-7651-01 X 39937186 39937186 G A BCOR 5'UTR 0.24 TCGA-IB-7651-01 X 40522271 40522271 C T MED14 Missense_Mutation p.G1197D 0.21 tolerated(0.08) possibly_damaging(0.886) TCGA-IB-7651-01 X 40586068 40586068 C T MED14 Missense_Mutation p.R93H 0.17 deleterious(0) benign(0.209) TCGA-IB-7651-01 X 41000309 41000309 A G USP9X Silent p.E287E 0.21 TCGA-IB-7651-01 X 41075627 41075627 G A USP9X Missense_Mutation p.R1936H 0.21 deleterious(0.01) possibly_damaging(0.664) TCGA-IB-7651-01 X 41204512 41204512 A G DDX3X Missense_Mutation p.T369A 0.24 tolerated(0.12) benign(0.005) TCGA-IB-7651-01 X 41333654 41333654 G A NYX Silent p.V316V 0.27 TCGA-IB-7651-01 X 41437686 41437686 G A CASK Silent p.G470G 0.10 TCGA-IB-7651-01 X 43817734 43817734 T C NDP Missense_Mutation p.Y53C 0.22 deleterious(0.02) possibly_damaging(0.864) TCGA-IB-7651-01 X 45059910 45059910 G A CXorf36 Silent p.F54F 0.21 TCGA-IB-7651-01 X 46480434 46480434 G T SLC9A7 Missense_Mutation p.L600M 0.29 tolerated(0.51) benign(0.027) TCGA-IB-7651-01 X 47039844 47039844 G A RBM10 Missense_Mutation p.R396H 0.19 deleterious(0) probably_damaging(0.991) TCGA-IB-7651-01 X 47058959 47058959 G A UBA1 Silent p.V142V 0.22 TCGA-IB-7651-01 X 47065399 47065399 T C UBA1 Missense_Mutation p.I543T 0.09 deleterious(0.03) benign(0.052) TCGA-IB-7651-01 X 47103898 47103898 C T USP11 Missense_Mutation p.R641C 0.17 deleterious(0.02) possibly_damaging(0.534) TCGA-IB-7651-01 X 47103933 47103933 C A USP11 Missense_Mutation p.D652E 0.17 tolerated(0.69) benign(0.258) TCGA-IB-7651-01 X 47307548 47307548 G A ZNF41 Missense_Mutation p.H541Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 X 47307946 47307946 T G ZNF41 Missense_Mutation p.E408A 0.22 deleterious(0.01) possibly_damaging(0.772) TCGA-IB-7651-01 X 47326887 47326887 G A ZNF41 5'UTR 0.18 TCGA-IB-7651-01 X 47429401 47429401 G A ARAF Missense_Mutation p.S510N 0.22 deleterious(0.01) possibly_damaging(0.512) TCGA-IB-7651-01 X 47487033 47487033 G A CFP Silent p.G137G 0.17 TCGA-IB-7651-01 X 47775190 47775190 G A ZNF81 Missense_Mutation p.G382E 0.22 deleterious(0.03) benign(0.116) TCGA-IB-7651-01 X 48317422 48317422 T C SLC38A5 Splice_Site p.X440_splice 0.21 TCGA-IB-7651-01 X 48339583 48339583 C T FTSJ1 Missense_Mutation p.L136F 0.23 deleterious(0.01) probably_damaging(0.981) TCGA-IB-7651-01 X 48340860 48340860 G T FTSJ1 Missense_Mutation p.S242I 0.24 deleterious(0.01) possibly_damaging(0.823) TCGA-IB-7651-01 X 48370880 48370880 C T PORCN Silent p.V180V 0.24 TCGA-IB-7651-01 X 48418517 48418517 C T TBC1D25 Silent p.Y407Y 0.21 TCGA-IB-7651-01 X 48674663 48674663 C T HDAC6 Missense_Mutation p.L537F 0.24 tolerated(0.11) benign(0.049) TCGA-IB-7651-01 X 48750979 48750979 C T TIMM17B 3'UTR 0.24 TCGA-IB-7651-01 X 48762679 48762679 C A SLC35A2 Missense_Mutation p.W169C 0.16 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 X 48767103 48767103 C T SLC35A2 Missense_Mutation p.A88T 0.24 tolerated(0.39) benign(0.011) TCGA-IB-7651-01 X 48840196 48840196 C T GRIPAP1 Silent p.E421E 0.19 TCGA-IB-7651-01 X 48888050 48888050 G T TFE3 Silent p.S449S 0.06 TCGA-IB-7651-01 X 48972297 48972297 C T GPKOW Missense_Mutation p.R363H 0.25 deleterious(0.05) benign(0.308) TCGA-IB-7651-01 X 48973491 48973491 A C GPKOW Missense_Mutation p.V269G 0.22 tolerated(0.11) benign(0.02) TCGA-IB-7651-01 X 49019191 49019191 G A MAGIX 5'Flank 0.26 TCGA-IB-7651-01 X 49022434 49022434 G T MAGIX Missense_Mutation p.S234I 0.21 tolerated(0.18) benign(0.117) TCGA-IB-7651-01 X 49071930 49071930 C T CACNA1F Missense_Mutation p.V1115M 0.21 tolerated(0.06) benign(0.124) TCGA-IB-7651-01 X 49079532 49079532 G T CACNA1F Silent p.S658S 0.13 TCGA-IB-7651-01 X 49088333 49088333 G A CACNA1F Silent p.L28L 0.32 TCGA-IB-7651-01 X 49237401 49237401 G A GAGE2B Missense_Mutation p.E36K 0.02 benign(0.038) TCGA-IB-7651-01 X 49368337 49368337 G A GAGE1 Missense_Mutation p.G91D 0.03 tolerated(0.07) benign(0.096) TCGA-IB-7651-01 X 49598509 49598509 A G PAGE4 3'UTR 0.14 TCGA-IB-7651-01 X 49957076 49957076 T G AKAP4 Missense_Mutation p.N763T 0.25 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 X 49957477 49957477 G A AKAP4 Silent p.I629I 0.20 TCGA-IB-7651-01 X 50144087 50144087 G A DGKK RNA 0.24 TCGA-IB-7651-01 X 50144126 50144126 G T DGKK RNA 0.26 TCGA-IB-7651-01 X 50350432 50350432 C T SHROOM4 Missense_Mutation p.G1237D 0.14 deleterious(0.02) possibly_damaging(0.756) TCGA-IB-7651-01 X 50376791 50376791 G T SHROOM4 Missense_Mutation p.A761D 0.23 tolerated(0.11) possibly_damaging(0.475) TCGA-IB-7651-01 X 51075813 51075813 C T NUDT10 5'UTR 0.12 TCGA-IB-7651-01 X 51150481 51150481 C T CXorf67 Missense_Mutation p.H205Y 0.18 deleterious(0.03) possibly_damaging(0.523) TCGA-IB-7651-01 X 51150656 51150656 C T CXorf67 Missense_Mutation p.A263V 0.24 tolerated(0.09) probably_damaging(0.987) TCGA-IB-7651-01 X 51150956 51150956 C A CXorf67 Missense_Mutation p.S363Y 0.23 tolerated(0.46) possibly_damaging(0.452) TCGA-IB-7651-01 X 52681355 52681355 G A SSX7 Missense_Mutation p.A76V 0.23 tolerated(0.07) benign(0.053) TCGA-IB-7651-01 X 52896284 52896284 C T XAGE3 Intron 0.23 TCGA-IB-7651-01 X 53106692 53106692 C A GPR173 Missense_Mutation p.L297I 0.22 tolerated(0.2) benign(0.03) TCGA-IB-7651-01 X 53171815 53171815 C A LINC01155 RNA 0.19 TCGA-IB-7651-01 X 53222106 53222106 C T KDM5C 3'UTR 0.23 TCGA-IB-7651-01 X 53245326 53245326 C A KDM5C Missense_Mutation p.Q237H 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-IB-7651-01 X 53439881 53439881 G A SMC1A Missense_Mutation p.R275W 0.25 deleterious(0) probably_damaging(0.988) TCGA-IB-7651-01 X 53456828 53456828 G A RIBC1 Missense_Mutation p.A191T 0.24 deleterious(0.05) benign(0.426) TCGA-IB-7651-01 X 53575044 53575044 T A HUWE1 Missense_Mutation p.K3409M 0.28 possibly_damaging(0.781) TCGA-IB-7651-01 X 53579602 53579602 T C HUWE1 Missense_Mutation p.D2916G 0.25 benign(0.008) TCGA-IB-7651-01 X 53674485 53674485 G A HUWE1 Silent p.D59D 0.23 TCGA-IB-7651-01 X 54185844 54185844 C T FAM120C Missense_Mutation p.G302D 0.22 tolerated(0.78) possibly_damaging(0.884) TCGA-IB-7651-01 X 54473856 54473856 A G FGD1 Missense_Mutation p.V823A 0.22 deleterious(0.01) benign(0.13) TCGA-IB-7651-01 X 54496518 54496518 G A FGD1 Silent p.D344D 0.25 TCGA-IB-7651-01 X 54496845 54496845 G A FGD1 Silent p.S235S 0.21 TCGA-IB-7651-01 X 54783453 54783453 G A ITIH6 Silent p.F1018F 0.22 TCGA-IB-7651-01 X 54783606 54783606 C T ITIH6 Missense_Mutation p.M967I 0.23 tolerated(0.13) benign(0.003) TCGA-IB-7651-01 X 54785257 54785257 G A ITIH6 Missense_Mutation p.A417V 0.24 deleterious(0.05) possibly_damaging(0.661) TCGA-IB-7651-01 X 54814949 54814949 G A ITIH6 Silent p.Y250Y 0.17 TCGA-IB-7651-01 X 54837363 54837363 G T MAGED2 Missense_Mutation p.R216M 0.15 tolerated(0.13) probably_damaging(0.998) TCGA-IB-7651-01 X 54954201 54954201 A C TRO Missense_Mutation p.K622T 0.16 deleterious(0) unknown(0) TCGA-IB-7651-01 X 54955207 54955207 G A TRO Missense_Mutation p.D684N 0.20 deleterious(0) unknown(0) TCGA-IB-7651-01 X 54957437 54957437 G A TRO Missense_Mutation p.G1427D 0.23 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-IB-7651-01 X 54959869 54959869 C A PFKFB1 Missense_Mutation p.E461D 0.24 benign(0) TCGA-IB-7651-01 X 54978518 54978518 G A PFKFB1 Silent p.D222D 0.26 TCGA-IB-7651-01 X 55035746 55035746 C T ALAS2 Missense_Mutation p.G544E 0.22 tolerated(0.06) benign(0.03) TCGA-IB-7651-01 X 55748704 55748704 G A RRAGB Missense_Mutation p.R71H 0.21 deleterious(0) benign(0.249) TCGA-IB-7651-01 X 57021054 57021054 G A SPIN3 Silent p.V109V 0.21 TCGA-IB-7651-01 X 57162718 57162718 A C SPIN2A Missense_Mutation p.L105V 0.24 tolerated(0.4) benign(0.015) TCGA-IB-7651-01 X 57318998 57318998 G A FAAH2 Missense_Mutation p.G87E 0.23 deleterious(0.01) benign(0.348) TCGA-IB-7651-01 X 57620480 57620480 G A ZXDB Missense_Mutation p.A667T 0.12 tolerated(0.09) benign(0.263) TCGA-IB-7651-01 X 591560 591560 C T SHOX 5'UTR 0.26 TCGA-IB-7651-01 X 5950748 5950748 G A NLGN4X Intron 0.21 TCGA-IB-7651-01 X 62898340 62898340 C T ARHGEF9 Missense_Mutation p.R225H 0.22 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 X 63411844 63411844 T C AMER1 Silent p.P441P 0.22 TCGA-IB-7651-01 X 63412815 63412815 G T AMER1 Missense_Mutation p.L118M 0.20 tolerated(0.08) possibly_damaging(0.78) TCGA-IB-7651-01 X 63413144 63413144 G A AMER1 Missense_Mutation p.A8V 0.04 tolerated_low_confidence(0.13) benign(0.011) TCGA-IB-7651-01 X 63551321 63551321 T C MTMR8 Intron 0.33 TCGA-IB-7651-01 X 64722815 64722815 C T ZC3H12B Missense_Mutation p.P746L 0.22 deleterious(0) benign(0.305) TCGA-IB-7651-01 X 65420511 65420511 T C HEPH Missense_Mutation p.V719A 0.21 deleterious(0.01) benign(0.196) TCGA-IB-7651-01 X 65486305 65486305 G A HEPH Missense_Mutation p.E1144K 0.22 tolerated(0.41) benign(0.005) TCGA-IB-7651-01 X 66937403 66937403 C T AR Nonsense_Mutation p.R753* 0.26 TCGA-IB-7651-01 X 67283811 67283811 C A OPHN1 Silent p.G681G 0.18 TCGA-IB-7651-01 X 67937991 67937991 A G STARD8 Missense_Mutation p.D412G 0.26 tolerated(0.14) possibly_damaging(0.623) TCGA-IB-7651-01 X 67938081 67938081 G C STARD8 Missense_Mutation p.S442T 0.07 tolerated_low_confidence(0.5) benign(0.001) TCGA-IB-7651-01 X 67938201 67938201 C A STARD8 Missense_Mutation p.A482D 0.13 tolerated_low_confidence(0.12) benign(0.154) TCGA-IB-7651-01 X 68060137 68060137 C T EFNB1 Silent p.S227S 0.21 TCGA-IB-7651-01 X 68382464 68382464 C A PJA1 Missense_Mutation p.Q206H 0.06 deleterious(0.02) benign(0.03) TCGA-IB-7651-01 X 68382676 68382676 G A PJA1 Nonsense_Mutation p.R136* 0.23 TCGA-IB-7651-01 X 68382741 68382741 G A PJA1 Missense_Mutation p.A114V 0.12 tolerated(0.09) benign(0.08) TCGA-IB-7651-01 X 68725452 68725452 G A FAM155B Silent p.A109A 0.21 TCGA-IB-7651-01 X 68836217 68836217 G A EDA Missense_Mutation p.S22N 0.09 tolerated_low_confidence(0.06) unknown(0) TCGA-IB-7651-01 X 69420280 69420280 C T DGAT2L6 Missense_Mutation p.P148L 0.19 deleterious(0.01) probably_damaging(1) TCGA-IB-7651-01 X 69489230 69489230 G T ARR3 5'UTR 0.18 TCGA-IB-7651-01 X 69497300 69497300 C A ARR3 Missense_Mutation p.P177H 0.20 deleterious(0) possibly_damaging(0.792) TCGA-IB-7651-01 X 69722194 69722194 C T DLG3 3'UTR 0.27 TCGA-IB-7651-01 X 69749792 69749792 C T TEX11 Missense_Mutation p.V875I 0.24 tolerated(1) benign(0) TCGA-IB-7651-01 X 69843825 69843825 C T TEX11 Missense_Mutation p.A591T 0.20 tolerated(0.53) benign(0.033) TCGA-IB-7651-01 X 70348222 70348222 C A MED12 Missense_Mutation p.L1096I 0.26 probably_damaging(0.947) TCGA-IB-7651-01 X 70471421 70471421 T G ZMYM3 Missense_Mutation p.K233T 0.21 tolerated_low_confidence(0.7) benign(0) TCGA-IB-7651-01 X 70521651 70521651 G A ITGB1BP2 5'UTR 0.22 TCGA-IB-7651-01 X 70586298 70586298 A G TAF1 Missense_Mutation p.N45S 0.23 deleterious(0) benign(0.332) TCGA-IB-7651-01 X 70595105 70595105 G T TAF1 Missense_Mutation p.K167N 0.19 tolerated_low_confidence(0.16) benign(0.075) TCGA-IB-7651-01 X 70777093 70777093 A G OGT Missense_Mutation p.K457E 0.14 tolerated(0.21) benign(0.056) TCGA-IB-7651-01 X 70824397 70824397 C T ACRC Missense_Mutation p.P424S 0.21 unknown(0) TCGA-IB-7651-01 X 71350291 71350291 C A RGAG4 Missense_Mutation p.R367M 0.25 deleterious_low_confidence(0) possibly_damaging(0.846) TCGA-IB-7651-01 X 71351008 71351008 G A RGAG4 Missense_Mutation p.P128L 0.29 tolerated(0.22) benign(0.005) TCGA-IB-7651-01 X 71359770 71359770 G A NHSL2 Missense_Mutation p.R791Q 0.23 deleterious(0.05) benign(0.022) TCGA-IB-7651-01 X 71360063 71360063 C T NHSL2 Missense_Mutation p.P889S 0.11 tolerated(0.1) benign(0.073) TCGA-IB-7651-01 X 72434219 72434219 G A NAP1L2 Missense_Mutation p.A37V 0.23 tolerated_low_confidence(0.22) benign(0.002) TCGA-IB-7651-01 X 7252125 7252125 C A STS Missense_Mutation p.A452D 0.25 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 X 72667226 72667226 C T CDX4 Missense_Mutation p.A46V 0.09 deleterious(0.03) benign(0.005) TCGA-IB-7651-01 X 73063692 73063692 C T XIST RNA 0.26 TCGA-IB-7651-01 X 73065089 73065089 C T XIST RNA 0.26 TCGA-IB-7651-01 X 73072071 73072071 G A XIST RNA 0.19 TCGA-IB-7651-01 X 73960434 73960434 A C KIAA2022 Missense_Mutation p.L1320V 0.24 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 X 73964099 73964099 G T KIAA2022 Missense_Mutation p.A98D 0.22 deleterious(0) probably_damaging(0.999) TCGA-IB-7651-01 X 75004464 75004464 C T MAGEE2 Silent p.G141G 0.22 TCGA-IB-7651-01 X 75648934 75648934 C T MAGEE1 Missense_Mutation p.P204L 0.12 tolerated_low_confidence(0.49) benign(0.001) TCGA-IB-7651-01 X 75650590 75650590 T G MAGEE1 Missense_Mutation p.F756C 0.24 deleterious(0) probably_damaging(0.998) TCGA-IB-7651-01 X 76939224 76939224 G A ATRX Silent p.N508N 0.22 TCGA-IB-7651-01 X 77131009 77131009 C T MAGT1 Missense_Mutation p.R95H 0.26 tolerated(0.39) possibly_damaging(0.888) TCGA-IB-7651-01 X 77244750 77244750 C A ATP7A Missense_Mutation p.A211D 0.21 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 X 77289223 77289223 G T ATP7A Missense_Mutation p.D1139Y 0.22 deleterious(0.02) possibly_damaging(0.69) TCGA-IB-7651-01 X 77369532 77369532 G T PGK1 Missense_Mutation p.D98Y 0.08 deleterious(0.02) possibly_damaging(0.589) TCGA-IB-7651-01 X 77369650 77369650 G A PGK1 Missense_Mutation p.G137E 0.20 deleterious(0.02) possibly_damaging(0.545) TCGA-IB-7651-01 X 77913260 77913260 C T ZCCHC5 Missense_Mutation p.A220T 0.17 tolerated(0.53) benign(0.012) TCGA-IB-7651-01 X 78010800 78010800 G A LPAR4 Missense_Mutation p.R145Q 0.22 deleterious(0.03) benign(0.168) TCGA-IB-7651-01 X 7811668 7811668 G A VCX Missense_Mutation p.D78N 0.18 tolerated(0.15) unknown(0) TCGA-IB-7651-01 X 79286360 79286360 A G TBX22 Missense_Mutation p.N438S 0.25 tolerated(0.48) benign(0.021) TCGA-IB-7651-01 X 79699097 79699097 G A FAM46D Silent p.P353P 0.22 TCGA-IB-7651-01 X 79932615 79932615 A C BRWD3 Missense_Mutation p.D1634E 0.23 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-IB-7651-01 X 79932771 79932771 A C BRWD3 Missense_Mutation p.D1582E 0.26 tolerated_low_confidence(0.53) benign(0.001) TCGA-IB-7651-01 X 79945476 79945476 G A BRWD3 Nonsense_Mutation p.R1240* 0.21 TCGA-IB-7651-01 X 79979292 79979292 T C BRWD3 Silent p.G535G 0.25 TCGA-IB-7651-01 X 8138261 8138261 C T VCX2 Missense_Mutation p.D78N 0.15 tolerated_low_confidence(0.21) unknown(0) TCGA-IB-7651-01 X 83128385 83128385 T G CYLC1 Missense_Mutation p.D223E 0.23 deleterious(0.05) possibly_damaging(0.621) TCGA-IB-7651-01 X 83129557 83129557 C A CYLC1 Missense_Mutation p.P614H 0.06 deleterious(0) probably_damaging(0.975) TCGA-IB-7651-01 X 83724000 83724000 C T HDX Missense_Mutation p.C244Y 0.24 tolerated(1) benign(0.001) TCGA-IB-7651-01 X 83724135 83724135 T G HDX Missense_Mutation p.N199T 0.05 tolerated(1) benign(0.002) TCGA-IB-7651-01 X 8433418 8433418 G A VCX3B 5'UTR 0.10 TCGA-IB-7651-01 X 8434386 8434386 A G VCX3B Missense_Mutation p.S235G 0.21 tolerated_low_confidence(0.09) unknown(0) TCGA-IB-7651-01 X 84363222 84363222 T C SATL1 Silent p.S251S 0.22 TCGA-IB-7651-01 X 85950138 85950138 C T DACH2 Missense_Mutation p.A296V 0.15 tolerated(0.14) benign(0.002) TCGA-IB-7651-01 X 85969592 85969592 C A DACH2 Missense_Mutation p.P325T 0.23 deleterious(0) probably_damaging(1) TCGA-IB-7651-01 X 88008738 88008738 A C CPXCR1 Missense_Mutation p.D108A 0.23 deleterious(0.05) probably_damaging(0.932) TCGA-IB-7651-01 X 89177650 89177650 C T TGIF2LX Missense_Mutation p.P189L 0.21 tolerated(0.36) probably_damaging(0.995) TCGA-IB-7651-01 X 9000434 9000434 T C FAM9B Missense_Mutation p.T33A 0.22 tolerated(0.23) probably_damaging(0.935) TCGA-IB-7651-01 X 9001030 9001030 A C FAM9B 5'UTR 0.23 TCGA-IB-7651-01 X 90691094 90691094 G A PABPC5 Missense_Mutation p.R173H 0.26 deleterious(0.02) possibly_damaging(0.714) TCGA-IB-7651-01 X 91090729 91090729 C T PCDH11X Nonsense_Mutation p.R76* 0.26 TCGA-IB-7651-01 X 91873534 91873534 G A PCDH11X Silent p.P1213P 0.23 TCGA-IB-7651-01 X 96327938 96327938 A G DIAPH2 Splice_Site p.X684_splice 0.15 TCGA-IB-7651-01 X 9728834 9728834 A G GPR143 Missense_Mutation p.F95L 0.19 tolerated(0.35) benign(0.042) TCGA-IB-7651-01 X 9863881 9863881 C T SHROOM2 Missense_Mutation p.R645W 0.19 deleterious(0) possibly_damaging(0.579) TCGA-IB-7651-01 X 9905433 9905433 C T SHROOM2 Missense_Mutation p.P1283S 0.27 tolerated(0.13) benign(0.01) TCGA-IB-7651-01 X 99657821 99657821 T G PCDH19 Missense_Mutation p.K773Q 0.19 tolerated(0.46) probably_damaging(0.968) TCGA-IB-7651-01 X 99661460 99661460 G A PCDH19 Silent p.T712T 0.10 TCGA-IB-7651-01 X 99661672 99661672 C T PCDH19 Missense_Mutation p.V642M 0.30 deleterious(0) probably_damaging(0.997) TCGA-IB-7651-01 X 99662630 99662630 C T PCDH19 Silent p.G322G 0.20 TCGA-IB-7651-01 X 99931024 99931024 C T SYTL4 3'UTR 0.23 TCGA-IB-7652-01 10 24762714 24762714 C A KIAA1217 Silent p.S468S 0.18 TCGA-IB-7652-01 10 31810814 31810814 C T ZEB1 Missense_Mutation p.P852S 0.18 tolerated(0.76) probably_damaging(0.999) TCGA-IB-7652-01 10 75399731 75399731 G A MYOZ1 Silent p.S15S 0.18 TCGA-IB-7652-01 10 86131917 86131917 A T CCSER2 Missense_Mutation p.N370I 0.21 deleterious(0) possibly_damaging(0.831) TCGA-IB-7652-01 11 107832887 107832887 A T RAB39A Missense_Mutation p.D148V 0.17 tolerated(0.56) benign(0.002) TCGA-IB-7652-01 11 108032080 108032080 C T NPAT Missense_Mutation p.E1245K 0.03 deleterious(0) possibly_damaging(0.864) TCGA-IB-7652-01 11 11373917 11373917 C G CSNK2A3 Silent p.G250G 0.11 TCGA-IB-7652-01 11 118451977 118452014 CGGTCTGCACAAAAGCAGGAAAGGCTATTGTTTCTCGA - ARCN1 Frame_Shift_Del p.T10Gfs*8 0.15 TCGA-IB-7652-01 11 128354796 128354799 TGTC - ETS1 Frame_Shift_Del p.D261Pfs*38 0.10 TCGA-IB-7652-01 11 56468064 56468064 T C OR9G1 Silent p.F67F 0.12 TCGA-IB-7652-01 11 66638642 66638642 C T PC Missense_Mutation p.A172T 0.15 deleterious(0.04) benign(0.005) TCGA-IB-7652-01 11 75113570 75113570 G T RPS3 Intron 0.15 TCGA-IB-7652-01 11 7949776 7949776 A G OR10A6 Missense_Mutation p.I145T 0.23 tolerated(0.12) benign(0.02) TCGA-IB-7652-01 11 86131064 86131064 C T CCDC81 Nonsense_Mutation p.Q596* 0.18 TCGA-IB-7652-01 11 94134167 94134167 C A GPR83 Missense_Mutation p.V83F 0.22 tolerated(0.2) benign(0.252) TCGA-IB-7652-01 12 11338898 11338898 G A TAS2R42 Missense_Mutation p.L216F 0.18 tolerated(0.05) possibly_damaging(0.737) TCGA-IB-7652-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.09 deleterious(0.03) benign(0.376) TCGA-IB-7652-01 12 5603961 5603961 G A NTF3 Missense_Mutation p.R207Q 0.16 tolerated(0.06) possibly_damaging(0.893) TCGA-IB-7652-01 12 56142711 56142711 G C GDF11 Missense_Mutation p.D263H 0.26 deleterious(0.03) probably_damaging(0.985) TCGA-IB-7652-01 13 33253063 33253063 A T PDS5B Missense_Mutation p.T352S 0.16 tolerated(0.07) benign(0.054) TCGA-IB-7652-01 13 33332728 33332728 A G PDS5B Silent p.T1082T 0.17 TCGA-IB-7652-01 14 105715594 105715594 G A BRF1 Intron 0.40 TCGA-IB-7652-01 14 33291794 33291794 G A AKAP6 Missense_Mutation p.R1592Q 0.19 deleterious(0) probably_damaging(0.996) TCGA-IB-7652-01 14 53110325 53110325 A T ERO1L Nonsense_Mutation p.L457* 0.08 TCGA-IB-7652-01 14 59789651 59789651 T G DAAM1 Missense_Mutation p.I161S 0.17 deleterious(0) unknown(0) TCGA-IB-7652-01 14 96864443 96864443 T G AK7 Missense_Mutation p.L46R 0.14 deleterious(0) probably_damaging(0.988) TCGA-IB-7652-01 15 101529485 101529485 G A LRRK1 Missense_Mutation p.R215Q 0.15 tolerated(0.97) benign(0.002) TCGA-IB-7652-01 15 83527855 83527855 C A HOMER2 Missense_Mutation p.K151N 0.16 deleterious(0) possibly_damaging(0.652) TCGA-IB-7652-01 15 86838550 86838550 T C AGBL1 Missense_Mutation p.L716P 0.03 deleterious(0) probably_damaging(1) TCGA-IB-7652-01 16 2284179 2284196 GCCGTTCGCCTGCGCGCA - E4F1 In_Frame_Del p.P462_Q467del 0.16 TCGA-IB-7652-01 16 24372859 24372859 G A CACNG3 Missense_Mutation p.R208Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-IB-7652-01 17 45567651 45567651 A T MRPL45P2 RNA 0.04 TCGA-IB-7652-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.23 tolerated(0.11) benign(0.308) TCGA-IB-7652-01 17 76459132 76459132 A G DNAH17 Missense_Mutation p.F2976L 0.25 benign(0.337) TCGA-IB-7652-01 18 22805592 22805592 C T ZNF521 Missense_Mutation p.E764K 0.10 deleterious(0) probably_damaging(0.999) TCGA-IB-7652-01 18 74962928 74962928 C T GALR1 Missense_Mutation p.R142C 0.20 deleterious(0.04) benign(0.305) TCGA-IB-7652-01 19 10081324 10081324 C T COL5A3 Missense_Mutation p.G1304S 0.16 unknown(0) TCGA-IB-7652-01 19 13409765 13409765 C A CACNA1A Missense_Mutation p.E894D 0.21 benign(0.188) TCGA-IB-7652-01 19 4555520 4555520 G A SEMA6B Silent p.Y176Y 0.17 TCGA-IB-7652-01 19 7805983 7805983 G A CD209 3'UTR 0.18 TCGA-IB-7652-01 1 111147355 111147355 C A KCNA2 Missense_Mutation p.G17V 0.16 tolerated_low_confidence(0.05) benign(0.169) TCGA-IB-7652-01 1 12316444 12316444 G C VPS13D Missense_Mutation p.V242L 0.30 benign(0.019) TCGA-IB-7652-01 1 13475123 13475123 G A PRAMEF18 Missense_Mutation p.R336C 0.14 deleterious(0.04) possibly_damaging(0.609) TCGA-IB-7652-01 1 152284997 152284997 G A FLG Missense_Mutation p.R789C 0.02 probably_damaging(0.994) TCGA-IB-7652-01 1 170967515 170967515 G T MROH9 Intron 0.13 TCGA-IB-7652-01 1 170967516 170967516 G T MROH9 Intron 0.13 TCGA-IB-7652-01 1 171254564 171254564 C T FMO1 Nonsense_Mutation p.R494* 0.18 TCGA-IB-7652-01 1 197071382 197071382 C T ASPM Silent p.E2333E 0.17 TCGA-IB-7652-01 1 233394271 233394271 G C PCNXL2 Missense_Mutation p.P446R 0.21 tolerated_low_confidence(0.09) benign(0.101) TCGA-IB-7652-01 1 248084666 248084666 T A OR2T8 Missense_Mutation p.M116K 0.17 deleterious(0) possibly_damaging(0.864) TCGA-IB-7652-01 1 34068023 34068023 C T CSMD2 Missense_Mutation p.R2221H 0.18 tolerated(0.35) benign(0.001) TCGA-IB-7652-01 1 52740258 52740258 T C ZFYVE9 Splice_Site p.X916_splice 0.17 TCGA-IB-7652-01 20 30662501 30662501 C T HCK Silent p.R135R 0.16 TCGA-IB-7652-01 20 4770321 4770339 TAGGCTGGTGTGAACACGG - RASSF2 Frame_Shift_Del p.S181Lfs*13 0.12 TCGA-IB-7652-01 22 17073061 17073061 A T CCT8L2 Missense_Mutation p.L127Q 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7652-01 22 18003349 18003349 G A CECR2 Missense_Mutation p.R346H 0.16 tolerated_low_confidence(0.15) benign(0) TCGA-IB-7652-01 2 141641448 141641448 T A LRP1B Missense_Mutation p.R1369S 0.17 benign(0.003) TCGA-IB-7652-01 2 166848439 166848439 G A SCN1A Silent p.I1782I 0.17 TCGA-IB-7652-01 2 197208385 197208385 C G HECW2 Missense_Mutation p.M132I 0.07 deleterious(0.03) possibly_damaging(0.848) TCGA-IB-7652-01 2 89111197 89111197 C T MIR4436A 5'Flank 0.22 TCGA-IB-7652-01 3 108270112 108270112 C G KIAA1524 Missense_Mutation p.E868Q 0.23 deleterious(0.01) probably_damaging(0.979) TCGA-IB-7652-01 3 132209833 132209833 G T DNAJC13 Missense_Mutation p.K1187N 0.07 deleterious(0) benign(0.424) TCGA-IB-7652-01 3 137849964 137849964 G C A4GNT Silent p.L45L 0.16 TCGA-IB-7652-01 3 142242967 142243004 CAAAAGCACTGTCACCAACTGTGAGATAATAGGTTCTA - ATR Frame_Shift_Del p.V1328Efs*35 0.15 TCGA-IB-7652-01 3 142741878 142741878 C T U2SURP Missense_Mutation p.P401L 0.10 tolerated(0.17) benign(0.005) TCGA-IB-7652-01 3 55021718 55021720 CTT A CACNA2D3 Frame_Shift_Del p.D876Efs*4 0.19 TCGA-IB-7652-01 3 58107201 58107201 G A FLNB Missense_Mutation p.E1033K 0.18 tolerated(0.09) benign(0.065) TCGA-IB-7652-01 3 58134060 58134060 T A FLNB Nonsense_Mutation p.C1983* 0.08 TCGA-IB-7652-01 4 134072871 134072871 T G PCDH10 Missense_Mutation p.Y526D 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-7652-01 4 71691088 71691088 T C GRSF1 Missense_Mutation p.T440A 0.17 deleterious(0) probably_damaging(0.916) TCGA-IB-7652-01 4 87684337 87684337 A T PTPN13 Silent p.P1337P 0.16 TCGA-IB-7652-01 5 101748803 101748803 C T SLCO6A1 Missense_Mutation p.C506Y 0.17 deleterious(0) probably_damaging(0.924) TCGA-IB-7652-01 5 1253880 1253880 G T TERT Missense_Mutation p.P1121Q 0.20 deleterious(0) probably_damaging(0.998) TCGA-IB-7652-01 5 132535363 132535363 G A FSTL4 Silent p.H651H 0.20 TCGA-IB-7652-01 5 137803753 137803753 A G EGR1 Missense_Mutation p.T539A 0.13 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-IB-7652-01 5 140188280 140188280 C T PCDHA4 Missense_Mutation p.A503V 0.14 deleterious_low_confidence(0.02) benign(0.067) TCGA-IB-7652-01 5 140215334 140215334 G A PCDHA7 Missense_Mutation p.A456T 0.15 tolerated_low_confidence(0.08) benign(0.047) TCGA-IB-7652-01 5 149001460 149001460 C T ARHGEF37 Silent p.A390A 0.08 TCGA-IB-7652-01 5 150923942 150923942 G T FAT2 Missense_Mutation p.A2249D 0.16 probably_damaging(0.985) TCGA-IB-7652-01 5 151049237 151049237 C T SPARC Missense_Mutation p.G147R 0.10 deleterious(0) probably_damaging(0.999) TCGA-IB-7652-01 5 156608099 156608099 C T ITK Silent p.S37S 0.16 TCGA-IB-7652-01 5 175111335 175111335 C A HRH2 Intron 0.11 TCGA-IB-7652-01 5 180057054 180057054 G A FLT4 Missense_Mutation p.R189W 0.11 deleterious(0) possibly_damaging(0.762) TCGA-IB-7652-01 5 32089602 32089631 CCCTAAATCTCCTAAGTGTAGAGCAGAGGG - PDZD2 In_Frame_Del p.P2017_G2026del 0.15 TCGA-IB-7652-01 6 162864492 162864492 G T PARK2 Missense_Mutation p.F7L 0.06 deleterious(0.04) probably_damaging(0.996) TCGA-IB-7652-01 6 20490617 20490617 G A E2F3 Missense_Mutation p.D452N 0.17 deleterious(0.03) possibly_damaging(0.566) TCGA-IB-7652-01 6 29365221 29365221 C A OR12D2 Missense_Mutation p.L249I 0.17 tolerated(0.13) benign(0.341) TCGA-IB-7652-01 6 29644897 29644897 C A ZFP57 5'UTR 0.14 TCGA-IB-7652-01 6 29644898 29644898 A G ZFP57 5'UTR 0.13 TCGA-IB-7652-01 6 84233558 84233558 T C PRSS35 Missense_Mutation p.I133T 0.20 deleterious(0) probably_damaging(0.999) TCGA-IB-7652-01 7 128478769 128478769 A T FLNC Missense_Mutation p.R441S 0.14 tolerated(0.17) benign(0.155) TCGA-IB-7652-01 7 144097345 144097345 C T NOBOX Missense_Mutation p.R302H 0.19 deleterious(0) probably_damaging(1) TCGA-IB-7652-01 7 151845337 151845338 - A KMT2C Frame_Shift_Ins p.G4559Wfs*15 0.18 TCGA-IB-7652-01 7 74563983 74563983 C T GTF2IRD2B Missense_Mutation p.S577F 0.14 tolerated(0.19) possibly_damaging(0.641) TCGA-IB-7652-01 8 1497384 1497384 C T DLGAP2 Silent p.N175N 0.25 TCGA-IB-7652-01 8 52384855 52384855 C T PXDNL Missense_Mutation p.R235Q 0.05 tolerated(0.24) possibly_damaging(0.663) TCGA-IB-7652-01 9 107267140 107267140 G A OR13F1 Missense_Mutation p.M199I 0.06 tolerated(0.13) benign(0.034) TCGA-IB-7652-01 9 111616954 111616954 T A ACTL7B 3'UTR 0.13 TCGA-IB-7652-01 9 113169147 113169147 C G SVEP1 Missense_Mutation p.K2911N 0.12 possibly_damaging(0.861) TCGA-IB-7652-01 9 124535711 124535711 G T DAB2IP Missense_Mutation p.R940S 0.15 tolerated(0.19) benign(0.102) TCGA-IB-7652-01 9 125140773 125140773 G T PTGS1 Silent p.L91L 0.16 TCGA-IB-7652-01 9 125563309 125563309 G A OR1K1 Missense_Mutation p.R303Q 0.32 tolerated(0.11) benign(0.001) TCGA-IB-7652-01 9 135487492 135487492 C G DDX31 Missense_Mutation p.R764T 0.17 tolerated(0.33) benign(0.004) TCGA-IB-7652-01 9 136402618 136402618 G A ADAMTSL2 Missense_Mutation p.R61H 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7652-01 9 138675926 138675926 C T KCNT1 Silent p.A966A 0.10 TCGA-IB-7652-01 X 102529240 102529240 T A TCEAL5 Silent p.P84P 0.16 TCGA-IB-7652-01 X 117742086 117742096 TCTAAGATCAT - DOCK11 Frame_Shift_Del p.L912Hfs*4 0.17 TCGA-IB-7652-01 X 129200623 129200623 C G ELF4 3'UTR 0.05 TCGA-IB-7652-01 X 130409231 130409231 G C IGSF1 Missense_Mutation p.Q1077E 0.14 tolerated(0.13) benign(0.197) TCGA-IB-7652-01 X 148579704 148579704 C A IDS Silent p.T3T 0.03 TCGA-IB-7652-01 X 149826497 149826497 A C MTM1 Silent p.A419A 0.15 TCGA-IB-7652-01 X 15266898 15266898 C T ASB9 Missense_Mutation p.S243N 0.16 deleterious(0.03) benign(0.232) TCGA-IB-7652-01 X 15266926 15266926 G A ASB9 Missense_Mutation p.R234C 0.16 tolerated(0.13) benign(0.365) TCGA-IB-7652-01 X 153577233 153577233 C T FLNA Missense_Mutation p.R2643H 0.03 tolerated(0.59) benign(0.005) TCGA-IB-7652-01 X 18845404 18845404 C T PPEF1 Silent p.S587S 0.20 TCGA-IB-7652-01 X 30578132 30578132 G T CXorf21 Missense_Mutation p.P114Q 0.17 deleterious(0) probably_damaging(1) TCGA-IB-7652-01 X 31198512 31198512 T A DMD Missense_Mutation p.Y3354F 0.04 benign(0.294) TCGA-IB-7652-01 X 35989882 35989882 G A CXorf22 Missense_Mutation p.R717K 0.17 tolerated(1) benign(0.002) TCGA-IB-7652-01 X 65409671 65409671 C T HEPH Silent p.H372H 0.19 TCGA-IB-7652-01 X 91090988 91090988 C T PCDH11X Missense_Mutation p.A162V 0.14 tolerated(0.27) benign(0.086) TCGA-IB-7654-01 10 75487108 75487108 G A RP11-464F9.1 RNA 0.18 TCGA-IB-7654-01 11 124740162 124740162 C T ROBO3 Missense_Mutation p.R290C 0.22 deleterious(0) possibly_damaging(0.81) TCGA-IB-7654-01 11 34162110 34162110 G A NAT10 Silent p.A861A 0.17 TCGA-IB-7654-01 11 55433411 55433411 A G OR4C6 Missense_Mutation p.M257V 0.16 tolerated_low_confidence(0.98) benign(0.001) TCGA-IB-7654-01 11 57564171 57564172 - C CTNND1 Frame_Shift_Ins p.G223Rfs*4 0.20 TCGA-IB-7654-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.14 deleterious(0.03) benign(0.376) TCGA-IB-7654-01 12 347142 347142 G T SLC6A13 Silent p.S171S 0.83 TCGA-IB-7654-01 12 5154138 5154138 C A KCNA5 Missense_Mutation p.F275L 0.07 tolerated(0.09) benign(0.012) TCGA-IB-7654-01 13 29600513 29600513 G A MTUS2 Missense_Mutation p.V570M 0.20 tolerated(0.23) benign(0.035) TCGA-IB-7654-01 14 105518434 105518434 C T GPR132 Missense_Mutation p.A14T 0.20 tolerated_low_confidence(0.38) benign(0.002) TCGA-IB-7654-01 14 106091475 106091475 G A IGHG4 Missense_Mutation p.T140M 0.13 deleterious(0.05) possibly_damaging(0.671) TCGA-IB-7654-01 15 49448050 49448050 G T COPS2 5'Flank 0.14 TCGA-IB-7654-01 15 74635350 74635350 C T CYP11A1 Missense_Mutation p.V320I 0.16 tolerated(1) benign(0.014) TCGA-IB-7654-01 15 91524975 91524975 T G PRC1 Intron 0.45 TCGA-IB-7654-01 16 10032400 10032400 C T GRIN2A Silent p.T141T 0.11 TCGA-IB-7654-01 16 86544637 86544637 G T FOXF1 Missense_Mutation p.M154I 0.18 deleterious(0.04) benign(0.001) TCGA-IB-7654-01 17 1303460 1303460 G A YWHAE 5'UTR 0.21 TCGA-IB-7654-01 17 39776925 39776925 C T KRT17 Silent p.E389E 0.12 TCGA-IB-7654-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.23 deleterious(0) probably_damaging(0.997) TCGA-IB-7654-01 18 59157880 59157880 G A CDH20 Missense_Mutation p.V32I 0.27 tolerated(0.11) benign(0.012) TCGA-IB-7654-01 19 33095176 33095176 G C ANKRD27 Missense_Mutation p.A883G 0.05 deleterious(0.03) benign(0.364) TCGA-IB-7654-01 19 45281168 45281168 C T CBLC 5'UTR 0.12 TCGA-IB-7654-01 19 49253828 49253828 G A FUT1 Silent p.G237G 0.20 TCGA-IB-7654-01 19 49564658 49564658 G A NTF4 Silent p.C199C 0.18 TCGA-IB-7654-01 19 55147124 55147124 C A LILRB1 Intron 0.19 TCGA-IB-7654-01 19 57868932 57868932 G A ZNF304 Silent p.G565G 0.15 TCGA-IB-7654-01 19 58596649 58596649 G A ZSCAN18 Silent p.D368D 0.23 TCGA-IB-7654-01 19 8160957 8160957 G A FBN3 Silent p.D1849D 0.18 TCGA-IB-7654-01 1 12820995 12820995 G A C1orf158 3'UTR 0.17 TCGA-IB-7654-01 1 150938637 150938637 C T CERS2 Missense_Mutation p.R377H 0.18 tolerated(0.21) benign(0) TCGA-IB-7654-01 1 248636892 248636892 G A OR2T3 Missense_Mutation p.V81M 0.14 deleterious(0) possibly_damaging(0.633) TCGA-IB-7654-01 1 38171170 38171170 C T CDCA8 Silent p.I214I 0.34 TCGA-IB-7654-01 1 38227571 38227571 G A EPHA10 Missense_Mutation p.A119V 0.09 tolerated(0.33) benign(0.259) TCGA-IB-7654-01 1 43826618 43826618 C T CDC20 Nonsense_Mutation p.Q355* 0.22 TCGA-IB-7654-01 1 68512928 68512928 C T DIRAS3 Missense_Mutation p.R18Q 0.18 tolerated(0.34) benign(0.027) TCGA-IB-7654-01 20 17462237 17462237 C T PCSK2 Missense_Mutation p.P480L 0.15 tolerated(0.07) benign(0.193) TCGA-IB-7654-01 21 44524456 44524456 G A U2AF1 Missense_Mutation p.S34F 0.17 deleterious(0) possibly_damaging(0.835) TCGA-IB-7654-01 2 121747768 121747768 G A GLI2 Silent p.S1426S 0.20 TCGA-IB-7654-01 3 122004152 122004152 C A CASR 3'UTR 0.20 TCGA-IB-7654-01 3 133099793 133099793 G A TMEM108 Missense_Mutation p.R413Q 0.21 deleterious(0.01) probably_damaging(0.986) TCGA-IB-7654-01 3 138762803 138762803 A G PRR23C Silent p.H220H 0.08 TCGA-IB-7654-01 3 138762804 138762804 T C PRR23C Missense_Mutation p.H220R 0.08 tolerated(0.13) benign(0.007) TCGA-IB-7654-01 4 985143 985143 T A SLC26A1 Missense_Mutation p.T117S 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-IB-7654-01 5 145609322 145609322 T A RBM27 Nonsense_Mutation p.Y146* 0.03 TCGA-IB-7654-01 5 176072487 176072487 C T EIF4E1B Missense_Mutation p.A195V 0.04 tolerated(0.11) probably_damaging(0.957) TCGA-IB-7654-01 6 18236737 18236740 TTTC - DEK Frame_Shift_Del p.K330Nfs*13 0.19 TCGA-IB-7654-01 6 26124090 26124090 A T HIST1H2BC Missense_Mutation p.S15T 0.19 deleterious_low_confidence(0.04) benign(0.011) TCGA-IB-7654-01 7 143657411 143657411 G A OR2F1 Silent p.A116A 0.13 TCGA-IB-7654-01 7 16298589 16298589 G A ISPD Nonsense_Mutation p.Q328* 0.14 TCGA-IB-7654-01 8 116427120 116427120 G C TRPS1 Missense_Mutation p.Q1006E 0.05 deleterious_low_confidence(0.02) benign(0.136) TCGA-IB-7654-01 8 99101495 99101495 C T C8orf47 Silent p.L84L 0.17 TCGA-IB-7654-01 9 140361771 140361771 C T PNPLA7 Missense_Mutation p.E1013K 0.21 tolerated(1) possibly_damaging(0.448) TCGA-IB-7654-01 9 34256484 34256484 G C KIF24 Missense_Mutation p.H1041D 0.16 tolerated(0.2) benign(0.001) TCGA-IB-7654-01 9 77416900 77416900 C T TRPM6 Silent p.A641A 0.23 TCGA-IB-7654-01 X 7811206 7811206 G - VCX 5'UTR 0.11 TCGA-IB-7885-01 10 98273378 98273379 - CG TLL2 Frame_Shift_Ins p.G22Afs*47 0.09 TCGA-IB-7885-01 11 10645395 10645395 G T MRVI1 Silent p.I459I 0.07 TCGA-IB-7885-01 11 113126681 113126681 C T NCAM1 Silent p.D686D 0.09 TCGA-IB-7885-01 11 33373261 33373261 A T HIPK3 Missense_Mutation p.D972V 0.08 tolerated(0.06) possibly_damaging(0.562) TCGA-IB-7885-01 11 34107957 34107957 C G CAPRIN1 Missense_Mutation p.P410A 0.09 tolerated(0.21) possibly_damaging(0.779) TCGA-IB-7885-01 11 47203984 47203984 C T PACSIN3 Missense_Mutation p.A61T 0.08 tolerated(0.12) possibly_damaging(0.632) TCGA-IB-7885-01 11 58347089 58347089 G A ZFP91 Missense_Mutation p.R112Q 0.12 deleterious_low_confidence(0.01) probably_damaging(0.921) TCGA-IB-7885-01 12 20854341 20854341 G T SLCO1C1 Missense_Mutation p.R73S 0.08 deleterious(0) probably_damaging(0.998) TCGA-IB-7885-01 12 21997786 21997786 A T ABCC9 Missense_Mutation p.S1054T 0.10 tolerated(0.24) benign(0.087) TCGA-IB-7885-01 14 51288700 51288700 T G NIN Silent p.T25T 0.09 TCGA-IB-7885-01 15 29092235 29092235 G A GOLGA6L7P RNA 0.07 TCGA-IB-7885-01 15 89386782 89386782 C T ACAN Silent p.C318C 0.05 TCGA-IB-7885-01 17 56598296 56598296 G A SEPT4 Intron 0.09 TCGA-IB-7885-01 17 79673938 79673938 G A SLC25A10 Silent p.A116A 0.07 TCGA-IB-7885-01 18 71790624 71790624 G A FBXO15 Missense_Mutation p.R373C 0.08 deleterious(0) possibly_damaging(0.794) TCGA-IB-7885-01 19 55247491 55247491 C T KIR3DL3 Silent p.C387C 0.16 TCGA-IB-7885-01 1 115829233 115829233 G A NGF Missense_Mutation p.R62C 0.07 deleterious(0) probably_damaging(0.998) TCGA-IB-7885-01 1 157068532 157068532 C T ETV3L Missense_Mutation p.R151Q 0.09 tolerated(0.51) benign(0) TCGA-IB-7885-01 1 157746898 157746898 C G FCRL2 5'UTR 0.07 TCGA-IB-7885-01 1 158596687 158596687 T G SPTA1 Missense_Mutation p.E1925D 0.06 tolerated(0.66) benign(0.012) TCGA-IB-7885-01 1 159273851 159273851 T A FCER1A Silent p.L70L 0.09 TCGA-IB-7885-01 1 177934213 177934213 G C SEC16B Missense_Mutation p.P168A 0.06 tolerated(0.18) benign(0.005) TCGA-IB-7885-01 1 186957643 186957643 C A PLA2G4A 3'UTR 0.08 TCGA-IB-7885-01 1 52249653 52249653 C T OSBPL9 Missense_Mutation p.S537L 0.05 deleterious(0) probably_damaging(0.998) TCGA-IB-7885-01 1 52249970 52249970 C T OSBPL9 Silent p.Y563Y 0.09 TCGA-IB-7885-01 20 44506266 44506266 G A ZSWIM3 Missense_Mutation p.V357I 0.05 tolerated(0.12) benign(0.006) TCGA-IB-7885-01 22 21213614 21213614 G A SNAP29 Silent p.K72K 0.07 TCGA-IB-7885-01 22 41533755 41533755 A G EP300 Missense_Mutation p.D574G 0.08 unknown(0) TCGA-IB-7885-01 2 205829959 205829959 G A PARD3B Missense_Mutation p.A103T 0.07 tolerated(0.79) probably_damaging(0.921) TCGA-IB-7885-01 2 48873884 48873884 C T STON1-GTF2A1L Silent p.I931I 0.05 TCGA-IB-7885-01 3 13612273 13612273 G A FBLN2 Missense_Mutation p.V140I 0.09 tolerated(0.17) benign(0.013) TCGA-IB-7885-01 3 30686373 30686373 T A TGFBR2 Missense_Mutation p.C102S 0.06 deleterious(0) probably_damaging(1) TCGA-IB-7885-01 5 134232006 134232006 G A TXNDC15 Missense_Mutation p.V260I 0.07 deleterious(0.04) possibly_damaging(0.642) TCGA-IB-7885-01 5 176025336 176025336 C T GPRIN1 Silent p.L500L 0.05 TCGA-IB-7885-01 5 180475168 180475168 C T BTNL9 Silent p.V117V 0.06 TCGA-IB-7885-01 6 121402015 121402015 G A TBC1D32 Nonsense_Mutation p.R1226* 0.10 TCGA-IB-7885-01 6 24145857 24145857 G A NRSN1 Missense_Mutation p.E91K 0.08 deleterious(0) probably_damaging(0.999) TCGA-IB-7885-01 6 30166741 30166741 G A TRIM26 Missense_Mutation p.S47L 0.11 tolerated(0.08) possibly_damaging(0.659) TCGA-IB-7885-01 6 31918989 31918989 C T CFB Missense_Mutation p.R1144W 0.10 deleterious(0.01) benign(0.097) TCGA-IB-7885-01 6 87969936 87969936 C A ZNF292 Missense_Mutation p.H2197N 0.07 deleterious(0) probably_damaging(0.999) TCGA-IB-7885-01 7 102996160 102996160 T C PSMC2 Silent p.T70T 0.08 TCGA-IB-7885-01 7 149524951 149524951 G A SSPO RNA 0.07 TCGA-IB-7885-01 7 43447240 43447240 A G HECW1 Silent p.K237K 0.08 TCGA-IB-7885-01 7 82584750 82584750 T C PCLO Missense_Mutation p.E1840G 0.09 unknown(0) TCGA-IB-7885-01 8 19250984 19250984 G A SH2D4A Missense_Mutation p.A402T 0.08 deleterious(0.04) benign(0.067) TCGA-IB-7885-01 8 21985133 21985133 C T HR Silent p.V274V 0.07 TCGA-IB-7885-01 9 129184132 129184132 G A MVB12B Splice_Site p.X221_splice 0.05 TCGA-IB-7885-01 9 137772750 137772750 C T FCN2 Missense_Mutation p.A28V 0.07 deleterious(0.02) benign(0.109) TCGA-IB-7885-01 9 35699041 35699041 C T TLN1 Silent p.R2329R 0.10 TCGA-IB-7885-01 9 79325846 79325846 G A PRUNE2 Silent p.D448D 0.09 TCGA-IB-7885-01 X 153035996 153035996 G A PLXNB3 Missense_Mutation p.V660M 0.07 deleterious(0) probably_damaging(1) TCGA-IB-7885-01 X 46332385 46332385 G C KRBOX4 Missense_Mutation p.A152P 0.09 tolerated(0.24) benign(0.092) TCGA-IB-7885-01 X 70627893 70627893 A G TAF1 Missense_Mutation p.M1446V 0.07 deleterious(0) possibly_damaging(0.708) TCGA-IB-7886-01 10 106918737 106918737 C A SORCS3 Missense_Mutation p.L573I 0.18 tolerated(0.69) benign(0.016) TCGA-IB-7886-01 10 119029974 119029974 G T SLC18A2 Missense_Mutation p.M480I 0.17 tolerated(0.29) benign(0.005) TCGA-IB-7886-01 10 75156930 75156930 G A ANXA7 Missense_Mutation p.P121L 0.30 deleterious(0.03) benign(0.434) TCGA-IB-7886-01 11 129735831 129735831 C T NFRKB Silent p.Q1218Q 0.13 TCGA-IB-7886-01 11 9853827 9853827 C T SBF2 Missense_Mutation p.G1199E 0.25 deleterious(0.01) probably_damaging(0.934) TCGA-IB-7886-01 12 106460608 106460608 G A NUAK1 Missense_Mutation p.A653V 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-IB-7886-01 12 1992157 1992157 G C CACNA2D4 Missense_Mutation p.T454R 0.16 deleterious(0) probably_damaging(0.985) TCGA-IB-7886-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.70 deleterious(0.04) probably_damaging(0.993) TCGA-IB-7886-01 13 53254258 53254258 G C SUGT1 Missense_Mutation p.D322H 0.51 deleterious(0) probably_damaging(0.999) TCGA-IB-7886-01 14 29237195 29237195 A G FOXG1 Missense_Mutation p.K237R 0.38 deleterious(0) probably_damaging(1) TCGA-IB-7886-01 14 68044761 68044761 G A PLEKHH1 Missense_Mutation p.V866M 0.36 deleterious(0) possibly_damaging(0.88) TCGA-IB-7886-01 14 86089365 86089365 G A FLRT2 Missense_Mutation p.A503T 0.39 tolerated(0.64) benign(0.004) TCGA-IB-7886-01 14 99640770 99640770 G A BCL11B Silent p.C801C 0.21 TCGA-IB-7886-01 15 34546711 34546711 C T SLC12A6 Missense_Mutation p.R319H 0.06 deleterious(0) probably_damaging(1) TCGA-IB-7886-01 16 19883256 19883256 C T GPRC5B Silent p.T304T 0.17 TCGA-IB-7886-01 16 29908310 29908310 G T SEZ6L2 Missense_Mutation p.A115E 0.07 tolerated(0.07) probably_damaging(0.932) TCGA-IB-7886-01 16 31200485 31200485 C T FUS Silent p.L292L 0.19 TCGA-IB-7886-01 16 64984898 64984898 G A CDH11 Missense_Mutation p.R556W 0.16 deleterious(0) benign(0.232) TCGA-IB-7886-01 17 43192783 43192783 C T PLCD3 Silent p.S496S 0.49 TCGA-IB-7886-01 17 7579518 7579519 - TT TP53 Frame_Shift_Ins p.D57Kfs*67 0.46 TCGA-IB-7886-01 18 48593481 48593482 - T SMAD4 Frame_Shift_Ins p.Y412Lfs*17 0.30 TCGA-IB-7886-01 19 15651359 15651359 G A CYP4F22 Missense_Mutation p.R257H 0.42 deleterious(0.02) possibly_damaging(0.736) TCGA-IB-7886-01 19 22940448 22940448 G T ZNF99 Missense_Mutation p.H755N 0.15 deleterious(0) possibly_damaging(0.695) TCGA-IB-7886-01 19 23836431 23836431 C T ZNF675 Missense_Mutation p.R435Q 0.39 tolerated(0.59) benign(0.088) TCGA-IB-7886-01 19 40729348 40729348 C A CNTD2 Missense_Mutation p.G207C 0.25 tolerated(0.06) probably_damaging(0.988) TCGA-IB-7886-01 19 42312866 42312866 G A CEACAM3 Missense_Mutation p.G147D 0.33 deleterious(0.04) benign(0.098) TCGA-IB-7886-01 19 42797190 42797190 C A CIC Silent p.I1184I 0.30 TCGA-IB-7886-01 19 49971707 49971707 G T ALDH16A1 Missense_Mutation p.D670Y 0.26 deleterious(0) probably_damaging(0.991) TCGA-IB-7886-01 19 53886697 53886697 C T ZNF525 3'UTR 0.05 TCGA-IB-7886-01 19 7117089 7117089 A C INSR Missense_Mutation p.L1376W 0.21 deleterious(0) probably_damaging(0.966) TCGA-IB-7886-01 19 9063127 9063128 - A MUC16 Frame_Shift_Ins p.E8107* 0.37 TCGA-IB-7886-01 1 176759114 176759114 G C PAPPA2 Splice_Site p.X1628_splice 0.20 TCGA-IB-7886-01 1 211751575 211751575 T A SLC30A1 Missense_Mutation p.N127I 0.22 deleterious(0) probably_damaging(0.998) TCGA-IB-7886-01 1 55148429 55148429 G A MROH7 Missense_Mutation p.V828I 0.25 tolerated(0.1) benign(0.1) TCGA-IB-7886-01 2 179368599 179368599 A T PLEKHA3 Silent p.P296P 0.14 TCGA-IB-7886-01 2 179537144 179537144 G A TTN Silent p.P11640P 0.37 TCGA-IB-7886-01 3 40433362 40433362 T A ENTPD3 Intron 0.18 TCGA-IB-7886-01 3 42448399 42448399 C A LYZL4 Missense_Mutation p.Q77H 0.24 deleterious(0.04) probably_damaging(0.978) TCGA-IB-7886-01 3 49136038 49136038 C A QARS Missense_Mutation p.V651F 0.20 deleterious(0.01) benign(0.012) TCGA-IB-7886-01 3 50336798 50336798 C T NAT6 5'UTR 0.17 TCGA-IB-7886-01 3 52003337 52003337 G A ABHD14B 3'UTR 0.29 TCGA-IB-7886-01 4 187542860 187542860 C T FAT1 Missense_Mutation p.R1627Q 0.25 benign(0.055) TCGA-IB-7886-01 4 49019292 49019292 T C CWH43 Silent p.L405L 0.26 TCGA-IB-7886-01 5 139918629 139918629 A G ANKHD1 Silent p.K2510K 0.20 TCGA-IB-7886-01 5 162901193 162901193 A T HMMR Silent p.S345S 0.12 TCGA-IB-7886-01 5 21751753 21751754 - TG CDH12 3'UTR 0.08 TCGA-IB-7886-01 5 39383071 39383071 C T DAB2 Silent p.P330P 0.17 TCGA-IB-7886-01 5 89971103 89971103 C T GPR98 Silent p.D1718D 0.11 TCGA-IB-7886-01 6 165809905 165809905 G A PDE10A Missense_Mutation p.T441M 0.28 tolerated(0.07) benign(0.02) TCGA-IB-7886-01 6 32038177 32038177 C T TNXB Missense_Mutation p.A1669T 0.26 benign(0.325) TCGA-IB-7886-01 7 106508944 106508944 C T PIK3CG Missense_Mutation p.P313L 0.20 tolerated(0.66) benign(0.006) TCGA-IB-7886-01 7 44801069 44801069 T G ZMIZ2 Missense_Mutation p.L421W 0.17 deleterious(0) probably_damaging(0.998) TCGA-IB-7886-01 7 87195527 87195527 A G ABCB1 Silent p.G187G 0.19 TCGA-IB-7886-01 7 90356126 90356126 G C CDK14 Silent p.S105S 0.39 TCGA-IB-7886-01 8 136594144 136594144 G A KHDRBS3 Missense_Mutation p.R212Q 0.14 tolerated(0.3) benign(0.141) TCGA-IB-7886-01 8 139629165 139629165 C T COL22A1 Missense_Mutation p.G1288S 0.16 unknown(0) TCGA-IB-7886-01 9 129455511 129455511 G A LMX1B Missense_Mutation p.R217Q 0.08 deleterious(0.01) possibly_damaging(0.51) TCGA-IB-7886-01 9 137653805 137653805 C T COL5A1 Missense_Mutation p.P657L 0.13 probably_damaging(0.988) TCGA-IB-7886-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.42 TCGA-IB-7886-01 X 100808322 100808322 A G ARMCX1 Missense_Mutation p.T137A 0.27 tolerated_low_confidence(0.06) benign(0.004) TCGA-IB-7887-01 11 6662161 6662161 A C DCHS1 Nonsense_Mutation p.Y228* 0.16 TCGA-IB-7887-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.13 deleterious(0.03) benign(0.376) TCGA-IB-7887-01 12 42538451 42538451 C T GXYLT1 5'UTR 0.15 TCGA-IB-7887-01 12 8205432 8205432 G C FOXJ2 Missense_Mutation p.D571H 0.05 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-IB-7887-01 13 23906194 23906194 G A SACS Nonsense_Mutation p.Q3941* 0.11 TCGA-IB-7887-01 14 19553582 19553582 A T POTEG Missense_Mutation p.T56S 0.03 deleterious_low_confidence(0.02) benign(0.248) TCGA-IB-7887-01 14 45473306 45473306 T C FAM179B Missense_Mutation p.F794S 0.16 deleterious_low_confidence(0.04) benign(0.197) TCGA-IB-7887-01 16 70726807 70726807 G A VAC14 Silent p.L701L 0.14 TCGA-IB-7887-01 17 39551782 39551782 T C KRT31 Missense_Mutation p.T228A 0.13 deleterious(0) benign(0.314) TCGA-IB-7887-01 17 7578206 7578206 T C TP53 Missense_Mutation p.S215G 0.15 deleterious(0.01) probably_damaging(1) TCGA-IB-7887-01 19 17760372 17760372 G A UNC13A Silent p.I488I 0.12 TCGA-IB-7887-01 19 47844495 47844495 C T C5AR2 Missense_Mutation p.R147W 0.11 deleterious(0.03) benign(0.204) TCGA-IB-7887-01 19 54691118 54691118 G A MBOAT7 Silent p.F86F 0.14 TCGA-IB-7887-01 19 8130859 8130859 G A FBN3 Nonsense_Mutation p.Q2792* 0.12 TCGA-IB-7887-01 1 152277769 152277769 A C FLG Missense_Mutation p.V3198G 0.13 unknown(0) TCGA-IB-7887-01 1 158390039 158390039 G A OR10K2 Silent p.V206V 0.10 TCGA-IB-7887-01 1 160259885 160259885 G T COPA 3'UTR 0.15 TCGA-IB-7887-01 1 229730411 229730411 C T TAF5L Missense_Mutation p.R468H 0.07 tolerated(0.22) benign(0.08) TCGA-IB-7887-01 1 246704361 246704361 A T TFB2M Missense_Mutation p.L388Q 0.11 deleterious(0) probably_damaging(0.976) TCGA-IB-7887-01 1 53287249 53287249 G A ZYG11B Missense_Mutation p.R728H 0.12 tolerated(0.14) benign(0.25) TCGA-IB-7887-01 20 35060133 35060133 G A DLGAP4 Missense_Mutation p.G5S 0.13 tolerated(0.49) benign(0.023) TCGA-IB-7887-01 20 43851593 43851593 G C SEMG2 Missense_Mutation p.E440D 0.14 tolerated(0.41) possibly_damaging(0.523) TCGA-IB-7887-01 21 38572533 38572533 G A TTC3 Missense_Mutation p.A1951T 0.10 tolerated(0.13) benign(0.009) TCGA-IB-7887-01 22 30983324 30983324 C T PES1 Missense_Mutation p.R106H 0.14 tolerated(0.12) probably_damaging(0.994) TCGA-IB-7887-01 2 203630211 203630212 - A FAM117B Frame_Shift_Ins p.N500Kfs*8 0.16 TCGA-IB-7887-01 3 10145917 10145917 A T FANCD2OS 3'UTR 0.17 TCGA-IB-7887-01 7 129856144 129856144 G T SSMEM1 Missense_Mutation p.S190I 0.11 deleterious(0) possibly_damaging(0.607) TCGA-IB-7887-01 7 14724956 14724956 C T DGKB Missense_Mutation p.R248Q 0.16 deleterious(0.03) possibly_damaging(0.557) TCGA-IB-7887-01 7 42004926 42004926 A C GLI3 Missense_Mutation p.C1249G 0.11 tolerated_low_confidence(0.32) benign(0) TCGA-IB-7887-01 7 42004927 42004927 G A GLI3 Silent p.P1248P 0.11 TCGA-IB-7887-01 8 11705590 11705591 - A CTSB Frame_Shift_Ins p.Y173Lfs*2 0.14 TCGA-IB-7887-01 8 32505402 32505402 G A NRG1 Intron 0.13 TCGA-IB-7887-01 8 62212794 62212794 C T CLVS1 Silent p.Y136Y 0.13 TCGA-IB-7887-01 X 130408064 130408064 G A IGSF1 Nonsense_Mutation p.R1295* 0.15 TCGA-IB-7888-01 10 106207500 106207500 C T CCDC147 Silent p.R767R 0.09 TCGA-IB-7888-01 10 43596003 43596003 G A RET Missense_Mutation p.R57Q 0.05 tolerated_low_confidence(0.38) benign(0.002) TCGA-IB-7888-01 11 55927158 55927158 C T OR8K5 Silent p.L212L 0.06 TCGA-IB-7888-01 11 61897787 61897787 C T INCENP Missense_Mutation p.S263F 0.07 deleterious(0) benign(0.184) TCGA-IB-7888-01 11 62519604 62519604 C T ZBTB3 Silent p.G561G 0.05 TCGA-IB-7888-01 12 49444897 49444897 T C KMT2D Missense_Mutation p.K857E 0.08 unknown(0) TCGA-IB-7888-01 13 49070346 49070346 G A RCBTB2 Missense_Mutation p.A499V 0.05 deleterious(0) benign(0.02) TCGA-IB-7888-01 15 101438319 101438319 G A ALDH1A3 Missense_Mutation p.R271Q 0.08 tolerated(0.13) benign(0.004) TCGA-IB-7888-01 15 25324229 25324229 G T SNORD116-13 RNA 0.05 TCGA-IB-7888-01 15 43579655 43579655 T C TGM7 Missense_Mutation p.I230V 0.09 tolerated(0.53) probably_damaging(0.994) TCGA-IB-7888-01 15 55838323 55838323 T C PYGO1 Silent p.A386A 0.08 TCGA-IB-7888-01 16 56920970 56920970 G A SLC12A3 Missense_Mutation p.E715K 0.04 tolerated(0.2) benign(0.014) TCGA-IB-7888-01 17 11650990 11650990 C T DNAH9 Missense_Mutation p.R2173W 0.06 possibly_damaging(0.773) TCGA-IB-7888-01 17 7578275 7578275 G A TP53 Nonsense_Mutation p.Q192* 0.04 TCGA-IB-7888-01 19 19655205 19655205 G A CILP2 Silent p.S617S 0.06 TCGA-IB-7888-01 19 36322199 36322199 G A NPHS1 Missense_Mutation p.T1129M 0.06 tolerated(0.15) benign(0.009) TCGA-IB-7888-01 19 36398352 36398352 C T TYROBP Silent p.A75A 0.05 TCGA-IB-7888-01 19 41745081 41745081 A G AXL Missense_Mutation p.I383V 0.07 tolerated(1) benign(0.004) TCGA-IB-7888-01 19 42873053 42873053 C T MEGF8 Silent p.D2113D 0.06 TCGA-IB-7888-01 19 44495748 44495748 C G ZNF155 Missense_Mutation p.L33V 0.05 deleterious(0) probably_damaging(0.999) TCGA-IB-7888-01 19 51728620 51728620 C T CD33 Missense_Mutation p.R62W 0.08 tolerated(0.09) possibly_damaging(0.641) TCGA-IB-7888-01 19 52825191 52825191 C T ZNF480 Missense_Mutation p.P230S 0.06 deleterious(0.05) benign(0.131) TCGA-IB-7888-01 1 33999485 33999485 C T CSMD2 Missense_Mutation p.R3157H 0.07 tolerated(0.16) benign(0.021) TCGA-IB-7888-01 1 37282815 37282815 G A GRIK3 Missense_Mutation p.T646M 0.06 deleterious(0) probably_damaging(0.998) TCGA-IB-7888-01 1 97250690 97250690 G C PTBP2 Missense_Mutation p.V262L 0.05 deleterious(0.04) possibly_damaging(0.895) TCGA-IB-7888-01 20 20493321 20493321 A C RALGAPA2 Missense_Mutation p.I1564M 0.06 deleterious(0) possibly_damaging(0.513) TCGA-IB-7888-01 22 24086567 24086567 C G ZNF70 Missense_Mutation p.C254S 0.05 deleterious(0) probably_damaging(1) TCGA-IB-7888-01 3 195515980 195515980 G T MUC4 Nonsense_Mutation p.S824* 0.08 TCGA-IB-7888-01 4 113460845 113460845 C T C4orf21 Missense_Mutation p.G2058E 0.09 deleterious(0.03) possibly_damaging(0.58) TCGA-IB-7888-01 4 55956204 55956204 C T KDR Silent p.S1037S 0.08 TCGA-IB-7888-01 5 140774356 140774356 C T PCDHGA8 Missense_Mutation p.T659M 0.05 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-IB-7888-01 5 148929835 148929835 C T CSNK1A1 Intron 0.07 TCGA-IB-7888-01 5 36684084 36684084 G A SLC1A3 Missense_Mutation p.A470T 0.08 deleterious(0.02) probably_damaging(0.987) TCGA-IB-7888-01 5 70840231 70840231 C A BDP1 Missense_Mutation p.L2154I 0.08 tolerated(0.07) benign(0.022) TCGA-IB-7888-01 5 74893770 74893770 T C POLK Missense_Mutation p.M847T 0.08 tolerated(1) benign(0) TCGA-IB-7888-01 6 110714483 110714483 G A DDO Missense_Mutation p.P202L 0.06 tolerated(0.21) benign(0.035) TCGA-IB-7888-01 7 123270139 123270139 A G ASB15 Silent p.V520V 0.07 TCGA-IB-7888-01 7 8790918 8790918 C T NXPH1 Missense_Mutation p.T112M 0.07 deleterious(0) probably_damaging(0.962) TCGA-IB-7888-01 8 27288476 27288476 C T PTK2B Silent p.F251F 0.05 TCGA-IB-7888-01 8 3165343 3165343 G A CSMD1 Missense_Mutation p.A1275V 0.08 benign(0.121) TCGA-IB-7888-01 9 119188282 119188282 C T ASTN2 Missense_Mutation p.V1239M 0.05 tolerated(0.09) unknown(0) TCGA-IB-7888-01 9 328114 328114 G A DOCK8 Silent p.A329A 0.09 TCGA-IB-7888-01 9 36670999 36670999 C T MELK Missense_Mutation p.R504C 0.05 deleterious(0) possibly_damaging(0.816) TCGA-IB-7888-01 X 119576496 119576496 G T LAMP2 Missense_Mutation p.L296M 0.06 deleterious(0) probably_damaging(0.997) TCGA-IB-7889-01 10 53564378 53564378 G A PRKG1 Missense_Mutation p.R209Q 0.10 deleterious(0) probably_damaging(0.994) TCGA-IB-7889-01 10 75391860 75391860 G T MYOZ1 Missense_Mutation p.P243H 0.04 deleterious(0) probably_damaging(0.988) TCGA-IB-7889-01 10 75391861 75391861 G T MYOZ1 Missense_Mutation p.P243T 0.04 deleterious(0) probably_damaging(0.975) TCGA-IB-7889-01 11 1642543 1642543 C T KRTAP5-4 3'UTR 0.12 TCGA-IB-7889-01 11 57995470 57995470 A G OR10Q1 Missense_Mutation p.L293S 0.07 deleterious(0) probably_damaging(0.917) TCGA-IB-7889-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.15 deleterious(0) possibly_damaging(0.479) TCGA-IB-7889-01 12 57389416 57389416 C T GPR182 Silent p.I141I 0.10 TCGA-IB-7889-01 13 45010700 45010701 - A TSC22D1 Intron 0.10 TCGA-IB-7889-01 13 95104903 95104903 C T DCT Missense_Mutation p.R398H 0.10 tolerated_low_confidence(0.17) benign(0.012) TCGA-IB-7889-01 14 38061592 38061592 C T FOXA1 Missense_Mutation p.A133T 0.06 tolerated(0.36) benign(0.109) TCGA-IB-7889-01 15 42276761 42276761 G A PLA2G4E Silent p.Y753Y 0.04 TCGA-IB-7889-01 15 49288724 49288724 C A SECISBP2L Missense_Mutation p.M821I 0.04 deleterious(0.01) probably_damaging(0.989) TCGA-IB-7889-01 15 81201475 81201475 C T KIAA1199 Missense_Mutation p.T542M 0.05 tolerated(0.16) benign(0) TCGA-IB-7889-01 15 85461805 85461805 C T SLC28A1 Silent p.H282H 0.05 TCGA-IB-7889-01 15 92981637 92981637 A G ST8SIA2 Silent p.G115G 0.12 TCGA-IB-7889-01 16 58010414 58010414 G A TEPP Silent p.L13L 0.06 TCGA-IB-7889-01 16 77353780 77353780 G A ADAMTS18 Missense_Mutation p.A833V 0.06 deleterious(0) benign(0.344) TCGA-IB-7889-01 17 18003681 18003681 C T DRG2 Silent p.L158L 0.09 TCGA-IB-7889-01 17 29576089 29576089 C T NF1 Silent p.S1354S 0.03 TCGA-IB-7889-01 17 4937373 4937373 G T SLC52A1 Missense_Mutation p.S137R 0.08 tolerated(0.33) benign(0.197) TCGA-IB-7889-01 17 65850550 65850550 C T BPTF Nonsense_Mutation p.Q370* 0.11 TCGA-IB-7889-01 17 7577046 7577046 C A TP53 Nonsense_Mutation p.E298* 0.09 TCGA-IB-7889-01 18 48591918 48591918 C T SMAD4 Missense_Mutation p.R361C 0.11 deleterious(0) probably_damaging(1) TCGA-IB-7889-01 18 59195270 59195270 G A CDH20 Missense_Mutation p.R363H 0.09 deleterious(0.04) benign(0.002) TCGA-IB-7889-01 19 15662205 15662205 C T CYP4F22 Missense_Mutation p.R507W 0.06 deleterious(0) probably_damaging(0.999) TCGA-IB-7889-01 19 48919318 48919318 C T GRIN2D Silent p.S547S 0.06 TCGA-IB-7889-01 19 53950474 53950474 C T ZNF761 RNA 0.05 TCGA-IB-7889-01 19 9071237 9071237 C T MUC16 Silent p.P5403P 0.05 TCGA-IB-7889-01 1 115216697 115216697 C T AMPD1 Missense_Mutation p.V636M 0.05 deleterious(0) probably_damaging(1) TCGA-IB-7889-01 1 150529196 150529196 G A ADAMTSL4 Missense_Mutation p.R559H 0.05 deleterious(0) probably_damaging(0.996) TCGA-IB-7889-01 1 155880296 155880296 G T RIT1 Silent p.A53A 0.15 TCGA-IB-7889-01 1 159163257 159163257 C T CADM3 Missense_Mutation p.R177W 0.20 deleterious(0.02) probably_damaging(0.913) TCGA-IB-7889-01 1 159900160 159900160 C T IGSF9 Missense_Mutation p.R628Q 0.20 tolerated(0.31) benign(0.252) TCGA-IB-7889-01 1 176709307 176709307 G A PAPPA2 Missense_Mutation p.E1376K 0.10 tolerated(0.09) benign(0.004) TCGA-IB-7889-01 1 177198999 177198999 C T BRINP2 5'UTR 0.04 TCGA-IB-7889-01 1 204006436 204006436 G A LINC00303 RNA 0.11 TCGA-IB-7889-01 20 2321250 2321250 C A TGM3 3'UTR 0.12 TCGA-IB-7889-01 20 51872260 51872260 C T TSHZ2 Missense_Mutation p.R755C 0.07 tolerated(0.06) benign(0.004) TCGA-IB-7889-01 22 25023843 25023843 G A GGT1 Silent p.P411P 0.05 TCGA-IB-7889-01 2 102314997 102314998 - A MAP4K4 Frame_Shift_Ins p.R43Sfs*4 0.08 TCGA-IB-7889-01 2 136564940 136564940 G A LCT Nonsense_Mutation p.R1311* 0.07 TCGA-IB-7889-01 2 136872710 136872710 G A CXCR4 Missense_Mutation p.S267F 0.03 deleterious(0) benign(0.207) TCGA-IB-7889-01 3 113804663 113804663 A G QTRTD1 Missense_Mutation p.Y399C 0.05 deleterious(0) probably_damaging(0.999) TCGA-IB-7889-01 3 50405102 50405102 G A CACNA2D2 Silent p.D763D 0.09 TCGA-IB-7889-01 4 119948009 119948009 C T SYNPO2 Missense_Mutation p.P162L 0.15 tolerated(0.23) benign(0.001) TCGA-IB-7889-01 4 13615144 13615144 G A BOD1L1 Missense_Mutation p.T439M 0.08 probably_damaging(0.999) TCGA-IB-7889-01 4 139966043 139966043 C T CCRN4L Silent p.A237A 0.07 TCGA-IB-7889-01 6 1313384 1313384 C T FOXQ1 Missense_Mutation p.L149F 0.05 deleterious(0.01) probably_damaging(0.936) TCGA-IB-7889-01 7 100377265 100377265 A T ZAN Missense_Mutation p.E2171V 0.14 unknown(0) TCGA-IB-7889-01 7 123599604 123599604 C T SPAM1 Silent p.L371L 0.11 TCGA-IB-7889-01 7 33407475 33407475 G A BBS9 Splice_Site p.X597_splice 0.05 TCGA-IB-7889-01 7 57528604 57528604 A T ZNF716 Missense_Mutation p.N146I 0.05 deleterious(0.01) possibly_damaging(0.885) TCGA-IB-7889-01 8 101076206 101076206 A T RGS22 Missense_Mutation p.L264M 0.06 tolerated(0.18) benign(0.033) TCGA-IB-7889-01 8 116616325 116616325 C T TRPS1 Missense_Mutation p.R624Q 0.15 tolerated_low_confidence(0.07) probably_damaging(0.996) TCGA-IB-7889-01 8 37964684 37964684 C T ASH2L Missense_Mutation p.S134L 0.07 tolerated(0.08) benign(0.037) TCGA-IB-7889-01 8 38187221 38187221 G T WHSC1L1 Missense_Mutation p.T419N 0.04 tolerated(0.67) benign(0) TCGA-IB-7889-01 9 131022880 131022881 - A GOLGA2 Frame_Shift_Ins p.W514Lfs*38 0.10 TCGA-IB-7889-01 9 131477728 131477728 C T PKN3 Silent p.D599D 0.05 TCGA-IB-7889-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.12 TCGA-IB-7890-01 10 101716827 101716827 G T DNMBP Missense_Mutation p.S135Y 0.11 deleterious(0.04) possibly_damaging(0.786) TCGA-IB-7890-01 10 99350210 99350210 C A C10orf62 Silent p.R186R 0.13 TCGA-IB-7890-01 11 116729339 116729339 G A SIK3 Missense_Mutation p.R842W 0.14 deleterious_low_confidence(0.01) benign(0.004) TCGA-IB-7890-01 11 124623837 124623837 C T ESAM Missense_Mutation p.R293Q 0.27 deleterious(0.01) possibly_damaging(0.638) TCGA-IB-7890-01 11 4471098 4471098 G A OR52K2 Missense_Mutation p.A177T 0.16 deleterious(0.03) possibly_damaging(0.804) TCGA-IB-7890-01 11 63472339 63472339 C T RTN3 Silent p.S53S 0.24 TCGA-IB-7890-01 11 66062807 66062807 G A TMEM151A Missense_Mutation p.V364M 0.10 tolerated(0.53) benign(0.01) TCGA-IB-7890-01 11 85967469 85967469 G C EED Missense_Mutation p.S156T 0.13 tolerated(0.62) benign(0) TCGA-IB-7890-01 12 25380276 25380276 T C KRAS Missense_Mutation p.Q61R 0.29 tolerated(0.06) benign(0.374) TCGA-IB-7890-01 12 5603687 5603687 C T NTF3 Missense_Mutation p.R116W 0.13 deleterious(0) probably_damaging(0.973) TCGA-IB-7890-01 13 101289837 101289837 G A TMTC4 Silent p.T318T 0.31 TCGA-IB-7890-01 13 46701838 46701838 C T LCP1 Missense_Mutation p.R591Q 0.13 deleterious(0) probably_damaging(0.991) TCGA-IB-7890-01 14 106174855 106174855 C T IGHA1 Missense_Mutation p.A50T 0.14 tolerated(0.82) benign(0.008) TCGA-IB-7890-01 14 70634760 70634760 C T SLC8A3 Missense_Mutation p.R127Q 0.13 deleterious(0) probably_damaging(0.971) TCGA-IB-7890-01 14 94120314 94120314 G A UNC79 Silent p.S1937S 0.17 TCGA-IB-7890-01 14 95080911 95080911 G A SERPINA3 Missense_Mutation p.V45M 0.16 tolerated(0.08) possibly_damaging(0.714) TCGA-IB-7890-01 15 43499591 43499591 G A EPB42 Missense_Mutation p.T405M 0.22 tolerated(0.11) benign(0.01) TCGA-IB-7890-01 15 68937512 68937512 C T CORO2B Missense_Mutation p.P10L 0.15 deleterious(0.03) benign(0.11) TCGA-IB-7890-01 15 72579635 72579635 G A CELF6 Missense_Mutation p.R473W 0.20 deleterious(0) possibly_damaging(0.745) TCGA-IB-7890-01 15 81654605 81654605 A G TMC3 Missense_Mutation p.V117A 0.04 tolerated(0.43) benign(0.009) TCGA-IB-7890-01 15 91419516 91419516 G A FURIN Missense_Mutation p.R70Q 0.16 deleterious(0.04) benign(0.036) TCGA-IB-7890-01 15 93588562 93588562 C T RGMA Missense_Mutation p.R348H 0.44 tolerated(0.43) benign(0.004) TCGA-IB-7890-01 16 14749057 14749057 G C BFAR Missense_Mutation p.W258S 0.26 deleterious(0) probably_damaging(0.999) TCGA-IB-7890-01 16 347159 347159 C T AXIN1 Missense_Mutation p.E618K 0.23 tolerated(0.1) benign(0.368) TCGA-IB-7890-01 16 57790798 57790798 G A KATNB1 Silent p.L636L 0.15 TCGA-IB-7890-01 16 72830417 72830417 G A ZFHX3 Missense_Mutation p.P2055L 0.12 benign(0.228) TCGA-IB-7890-01 17 28537580 28537580 C A SLC6A4 Missense_Mutation p.A468S 0.32 tolerated(0.19) benign(0.009) TCGA-IB-7890-01 17 29167753 29167753 C G ATAD5 Missense_Mutation p.S732C 0.14 deleterious(0.01) benign(0.114) TCGA-IB-7890-01 17 43174523 43174523 C A NMT1 Silent p.P208P 0.13 TCGA-IB-7890-01 17 43226570 43226570 T C HEXIM1 Missense_Mutation p.F5L 0.34 tolerated_low_confidence(1) benign(0) TCGA-IB-7890-01 17 48435627 48435627 G A XYLT2 Silent p.G667G 0.18 TCGA-IB-7890-01 17 7578254 7578254 C A TP53 Nonsense_Mutation p.G199* 0.35 TCGA-IB-7890-01 18 5415859 5415859 G A EPB41L3 Silent p.S675S 0.23 TCGA-IB-7890-01 19 36053403 36053403 G A ATP4A Silent p.A118A 0.05 TCGA-IB-7890-01 19 5210704 5210704 G T PTPRS Silent p.R1783R 0.24 TCGA-IB-7890-01 19 547332 547332 G A GZMM Silent p.S36S 0.05 TCGA-IB-7890-01 19 57328017 57328017 C T PEG3 Missense_Mutation p.R598H 0.18 tolerated(0.47) benign(0.011) TCGA-IB-7890-01 19 9070332 9070332 G A MUC16 Missense_Mutation p.A5705V 0.14 unknown(0) TCGA-IB-7890-01 1 120056677 120056677 C T HSD3B1 Silent p.G177G 0.19 TCGA-IB-7890-01 1 22405018 22405018 A G CDC42 Missense_Mutation p.K16R 0.17 deleterious(0) probably_damaging(0.98) TCGA-IB-7890-01 1 240370125 240370125 A G FMN2 Silent p.G671G 0.15 TCGA-IB-7890-01 1 4772349 4772349 C T AJAP1 Missense_Mutation p.A140V 0.22 tolerated(0.55) benign(0.001) TCGA-IB-7890-01 1 92737124 92737124 A G GLMN Missense_Mutation p.F274S 0.19 deleterious(0) benign(0.197) TCGA-IB-7890-01 20 35060062 35060062 C T DLGAP4 5'UTR 0.22 TCGA-IB-7890-01 20 54824818 54824818 C T MC3R Missense_Mutation p.R307C 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-IB-7890-01 20 57769548 57769548 G A ZNF831 Silent p.T1158T 0.15 TCGA-IB-7890-01 22 31011344 31011344 C T TCN2 Missense_Mutation p.P213S 0.14 tolerated(0.08) benign(0.046) TCGA-IB-7890-01 2 111399371 111399371 G T BUB1 Missense_Mutation p.P825T 0.15 tolerated(0.06) possibly_damaging(0.84) TCGA-IB-7890-01 2 171687567 171687567 G T GAD1 Missense_Mutation p.V138L 0.13 deleterious(0) benign(0.027) TCGA-IB-7890-01 2 172330428 172330428 T A DCAF17 Missense_Mutation p.I345N 0.12 deleterious(0) probably_damaging(0.91) TCGA-IB-7890-01 2 179638314 179638314 C T TTN Missense_Mutation p.R2490H 0.02 TCGA-IB-7890-01 2 185801329 185801329 A G ZNF804A Silent p.S402S 0.13 TCGA-IB-7890-01 2 42281326 42281326 C T PKDCC Missense_Mutation p.P305S 0.15 tolerated(1) benign(0.007) TCGA-IB-7890-01 2 55462742 55462742 A T RPS27A 3'UTR 0.16 TCGA-IB-7890-01 2 73675916 73675916 T C ALMS1 Silent p.T753T 0.13 TCGA-IB-7890-01 2 96933171 96933171 C T CIAO1 Silent p.T84T 0.25 TCGA-IB-7890-01 3 151155880 151155880 C A IGSF10 Missense_Mutation p.D2157Y 0.13 deleterious(0) probably_damaging(0.987) TCGA-IB-7890-01 3 180334120 180334120 T G CCDC39 Missense_Mutation p.K873T 0.37 tolerated(0.32) benign(0.366) TCGA-IB-7890-01 3 21462858 21462858 C T ZNF385D Missense_Mutation p.A346T 0.18 tolerated(0.28) benign(0.103) TCGA-IB-7890-01 3 33038656 33038656 C T GLB1 Missense_Mutation p.V639M 0.16 tolerated(0.07) benign(0.428) TCGA-IB-7890-01 4 109784536 109784536 C T COL25A1 Missense_Mutation p.R364Q 0.24 tolerated(0.14) probably_damaging(0.939) TCGA-IB-7890-01 4 84508424 84508424 A T AGPAT9 Missense_Mutation p.I166F 0.26 tolerated(0.31) benign(0.005) TCGA-IB-7890-01 5 140755877 140755877 G A PCDHGA6 Missense_Mutation p.V743M 0.13 tolerated_low_confidence(0.17) benign(0.086) TCGA-IB-7890-01 5 145895652 145895652 A C GPR151 Missense_Mutation p.S9A 0.13 tolerated(0.45) benign(0.004) TCGA-IB-7890-01 5 89977223 89977223 T C GPR98 Silent p.F1872F 0.17 TCGA-IB-7890-01 6 10882008 10882008 G A GCM2 Nonsense_Mutation p.Q7* 0.16 TCGA-IB-7890-01 6 24146060 24146060 C T NRSN1 Silent p.I158I 0.16 TCGA-IB-7890-01 6 28493824 28493824 C - GPX5 Frame_Shift_Del p.L13Ffs*3 0.21 TCGA-IB-7890-01 6 35810348 35810348 C T SRPK1 Missense_Mutation p.E552K 0.18 deleterious(0) probably_damaging(1) TCGA-IB-7890-01 7 142460792 142471717 7:142460792-142471717 - PRSS1 large deletion 0.10 TCGA-IB-7890-01 7 98609827 98609827 T A TRRAP Missense_Mutation p.L3810Q 0.04 possibly_damaging(0.887) TCGA-IB-7890-01 8 144808660 144808660 G A FAM83H Nonsense_Mutation p.Q991* 0.23 TCGA-IB-7890-01 8 144945204 144945204 C T EPPK1 Missense_Mutation p.V740M 0.10 probably_damaging(0.999) TCGA-IB-7890-01 8 37692836 37692836 G A GPR124 Missense_Mutation p.E585K 0.14 deleterious(0.04) benign(0.304) TCGA-IB-7890-01 8 52321614 52321614 G A PXDNL Missense_Mutation p.A857V 0.35 tolerated(0.25) benign(0.26) TCGA-IB-7890-01 9 117062960 117062960 G A COL27A1 Missense_Mutation p.G1565D 0.15 unknown(0) TCGA-IB-7890-01 9 139838442 139838442 C G FBXW5 Missense_Mutation p.V32L 0.20 deleterious(0.03) benign(0.37) TCGA-IB-7890-01 X 108636151 108636151 G A GUCY2F Missense_Mutation p.T853M 0.31 deleterious(0.02) probably_damaging(0.995) TCGA-IB-7890-01 X 151935450 151935450 C G MAGEA3 Missense_Mutation p.L239F 0.31 tolerated(0.33) benign(0.001) TCGA-IB-7891-01 10 5788328 5788328 G A FAM208B Missense_Mutation p.D982N 0.07 tolerated(0.18) benign(0.196) TCGA-IB-7891-01 11 117387200 117387200 C T DSCAML1 Missense_Mutation p.V649I 0.05 tolerated(0.15) benign(0.111) TCGA-IB-7891-01 11 12278458 12278458 C T MICAL2 Missense_Mutation p.R1028C 0.08 deleterious(0.01) benign(0.022) TCGA-IB-7891-01 11 74914094 74914094 C T SLCO2B1 Intron 0.06 TCGA-IB-7891-01 11 75152278 75152278 G A GDPD5 Missense_Mutation p.A468V 0.06 tolerated(0.16) benign(0.043) TCGA-IB-7891-01 12 13717016 13717016 G A GRIN2B Silent p.H1052H 0.09 TCGA-IB-7891-01 12 49433772 49433773 - G KMT2D Frame_Shift_Ins p.L2594Pfs*61 0.15 TCGA-IB-7891-01 12 62715327 62715327 C T USP15 Silent p.N186N 0.11 TCGA-IB-7891-01 14 90770393 90770393 G A NRDE2 Silent p.D297D 0.09 TCGA-IB-7891-01 15 101593294 101593294 G T LRRK1 Splice_Site p.X1286_splice 0.08 TCGA-IB-7891-01 15 90320161 90320161 G A MESP2 Silent p.G191G 0.33 TCGA-IB-7891-01 16 17211716 17211716 C T XYLT1 Missense_Mutation p.V782I 0.09 tolerated(0.42) benign(0.171) TCGA-IB-7891-01 17 31322436 31322436 C T SPACA3 Missense_Mutation p.S15L 0.06 deleterious_low_confidence(0) benign(0.307) TCGA-IB-7891-01 17 37119246 37119246 C G FBXO47 Missense_Mutation p.L11F 0.19 tolerated_low_confidence(0.12) possibly_damaging(0.453) TCGA-IB-7891-01 17 42961062 42961062 C G EFTUD2 Missense_Mutation p.E127D 0.08 tolerated(0.41) benign(0.004) TCGA-IB-7891-01 17 48190188 48190188 C T SAMD14 3'UTR 0.07 TCGA-IB-7891-01 17 48678109 48678109 C T CACNA1G Missense_Mutation p.A1238V 0.03 tolerated(0.07) benign(0.003) TCGA-IB-7891-01 17 74868797 74868797 C T MGAT5B 5'UTR 0.14 TCGA-IB-7891-01 17 7577547 7577547 C A TP53 Missense_Mutation p.G245V 0.10 deleterious(0) probably_damaging(1) TCGA-IB-7891-01 18 48575132 48575132 T A SMAD4 Missense_Mutation p.L109Q 0.08 deleterious(0) probably_damaging(0.997) TCGA-IB-7891-01 19 19640211 19640211 G A NDUFA13 3'Flank 0.08 TCGA-IB-7891-01 19 20308264 20308264 T A ZNF486 Missense_Mutation p.Y249N 0.08 tolerated(0.32) benign(0.014) TCGA-IB-7891-01 19 56466153 56466153 C A NLRP8 Missense_Mutation p.F243L 0.16 tolerated(1) benign(0.047) TCGA-IB-7891-01 19 56466562 56466562 T A NLRP8 Missense_Mutation p.L380M 0.03 tolerated(0.06) probably_damaging(0.946) TCGA-IB-7891-01 1 156849848 156849848 C T NTRK1 Missense_Mutation p.R702C 0.10 deleterious(0) probably_damaging(0.984) TCGA-IB-7891-01 1 17609365 17609365 C A PADI3 Missense_Mutation p.H596N 0.08 tolerated(0.52) possibly_damaging(0.846) TCGA-IB-7891-01 20 54945655 54945655 C T AURKA Missense_Mutation p.M305I 0.09 tolerated(0.11) benign(0.037) TCGA-IB-7891-01 21 31971102 31971102 C T KRTAP6-2 Missense_Mutation p.R31H 0.09 unknown(0) TCGA-IB-7891-01 21 46842447 46842447 G A COL18A1-AS1 RNA 0.09 TCGA-IB-7891-01 2 167162315 167162315 C T SCN9A Missense_Mutation p.V195I 0.10 tolerated(0.09) probably_damaging(1) TCGA-IB-7891-01 2 176959381 176959381 C T HOXD13 Nonsense_Mutation p.Q319* 0.05 TCGA-IB-7891-01 2 179300952 179300952 C A PRKRA Missense_Mutation p.S235I 0.04 deleterious(0.01) possibly_damaging(0.897) TCGA-IB-7891-01 2 202131315 202131315 G T CASP8 Nonsense_Mutation p.E95* 0.10 TCGA-IB-7891-01 2 21224563 21224563 A T APOB 3'UTR 0.12 TCGA-IB-7891-01 4 183713474 183713474 C T TENM3 Silent p.Y1883Y 0.06 TCGA-IB-7891-01 5 140431928 140431928 G A PCDHB1 Silent p.T291T 0.09 TCGA-IB-7891-01 5 140764634 140764634 G A PCDHGA7 Missense_Mutation p.R723H 0.07 tolerated_low_confidence(0.13) benign(0.019) TCGA-IB-7891-01 5 16694499 16694499 C T MYO10 Missense_Mutation p.V1261I 0.07 tolerated(1) benign(0.002) TCGA-IB-7891-01 5 167881063 167881063 C T WWC1 Silent p.T872T 0.04 TCGA-IB-7891-01 5 180622634 180622634 G T TRIM7 Silent p.I356I 0.03 TCGA-IB-7891-01 5 43704573 43704573 A G NNT 3'UTR 0.10 TCGA-IB-7891-01 5 54275110 54275110 T C ESM1 3'UTR 0.09 TCGA-IB-7891-01 6 152763321 152763321 C T SYNE1 Silent p.A1299A 0.06 TCGA-IB-7891-01 6 40399611 40399611 G A LRFN2 Silent p.G414G 0.10 TCGA-IB-7891-01 7 21659575 21659575 T A DNAH11 Missense_Mutation p.V1465D 0.03 possibly_damaging(0.826) TCGA-IB-7891-01 7 4185418 4185418 C T SDK1 Silent p.G1431G 0.06 TCGA-IB-7891-01 9 117849313 117849313 T C TNC Missense_Mutation p.N233D 0.06 tolerated(0.59) benign(0.008) TCGA-IB-7891-01 9 140135774 140135774 T G TUBB4B 5'UTR 0.14 TCGA-IB-7891-01 X 153581753 153581753 G T FLNA Missense_Mutation p.T1978K 0.06 tolerated(0.06) benign(0.15) TCGA-IB-7891-01 X 18797154 18797154 G A PPEF1 Silent p.P195P 0.07 TCGA-IB-7891-01 X 54784236 54784236 C T ITIH6 Silent p.R757R 0.04 TCGA-IB-7891-01 X 70444246 70444246 G A GJB1 Missense_Mutation p.R230H 0.05 tolerated(0.24) benign(0.143) TCGA-IB-7893-01 10 118315573 118315573 C T PNLIP Silent p.I291I 0.10 TCGA-IB-7893-01 10 72201344 72201344 G A NODAL Missense_Mutation p.A27V 0.17 tolerated(0.52) benign(0.001) TCGA-IB-7893-01 10 79761987 79761987 C A POLR3A Missense_Mutation p.S776I 0.09 deleterious(0.03) possibly_damaging(0.642) TCGA-IB-7893-01 11 100211266 100211266 C A CNTN5 Missense_Mutation p.F934L 0.22 tolerated(0.06) benign(0.05) TCGA-IB-7893-01 11 103175414 103175414 C A DYNC2H1 Missense_Mutation p.H3790N 0.04 probably_damaging(0.987) TCGA-IB-7893-01 11 10518392 10518392 C T AMPD3 Silent p.N497N 0.07 TCGA-IB-7893-01 11 47684620 47684620 T A AGBL2 Silent p.S831S 0.09 TCGA-IB-7893-01 11 55433006 55433006 G A OR4C6 Missense_Mutation p.V122M 0.19 deleterious_low_confidence(0.04) benign(0.223) TCGA-IB-7893-01 12 13061419 13061420 - TGGC GPRC5A Frame_Shift_Ins p.L81Wfs*72 0.10 TCGA-IB-7893-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.18 deleterious(0) benign(0.361) TCGA-IB-7893-01 12 81624902 81624902 C - ACSS3 Frame_Shift_Del p.F528Lfs*31 0.13 TCGA-IB-7893-01 14 105639421 105639421 G A NUDT14 Silent p.L202L 0.11 TCGA-IB-7893-01 14 51716045 51716045 A T TMX1 Missense_Mutation p.M149L 0.10 deleterious(0) benign(0.443) TCGA-IB-7893-01 14 79111585 79111585 G A NRXN3 5'UTR 0.08 TCGA-IB-7893-01 16 19590302 19590302 G T C16orf62 Intron 0.08 TCGA-IB-7893-01 17 39579066 39579066 C A KRT37 Missense_Mutation p.K232N 0.09 deleterious(0.01) probably_damaging(0.967) TCGA-IB-7893-01 17 7577520 7577520 A C TP53 Missense_Mutation p.I254S 0.22 deleterious(0) probably_damaging(1) TCGA-IB-7893-01 19 21606442 21606442 C T ZNF493 Silent p.G327G 0.07 TCGA-IB-7893-01 19 49713525 49713525 G A TRPM4 Missense_Mutation p.R1064H 0.23 tolerated(0.2) benign(0.003) TCGA-IB-7893-01 1 170699464 170699464 G A PRRX1 Intron 0.15 TCGA-IB-7893-01 1 236646508 236646508 G A EDARADD 3'Flank 0.07 TCGA-IB-7893-01 1 4772232 4772232 C A AJAP1 Missense_Mutation p.A101D 0.11 tolerated(0.2) possibly_damaging(0.683) TCGA-IB-7893-01 20 44236716 44236716 C T WFDC9 3'UTR 0.09 TCGA-IB-7893-01 20 45839477 45839477 C T ZMYND8 Missense_Mutation p.D1166N 0.10 deleterious_low_confidence(0) benign(0.145) TCGA-IB-7893-01 20 62044927 62044927 G A KCNQ2 Missense_Mutation p.R547W 0.12 deleterious(0) probably_damaging(0.946) TCGA-IB-7893-01 22 19492919 19492919 C T CDC45 Missense_Mutation p.R279C 0.07 deleterious(0.04) benign(0.236) TCGA-IB-7893-01 22 43032758 43032758 G A CYB5R3 Missense_Mutation p.P72L 0.17 deleterious(0) benign(0.396) TCGA-IB-7893-01 2 108917367 108917367 G A SULT1C2 Silent p.P128P 0.18 TCGA-IB-7893-01 2 141771238 141771238 T A LRP1B Missense_Mutation p.Y756F 0.19 benign(0.153) TCGA-IB-7893-01 2 170092528 170092528 C T LRP2 Missense_Mutation p.R1581Q 0.08 possibly_damaging(0.507) TCGA-IB-7893-01 2 219503301 219503301 G A ZNF142 Missense_Mutation p.R1609C 0.09 deleterious(0) possibly_damaging(0.689) TCGA-IB-7893-01 2 669842 669842 G A TMEM18 Missense_Mutation p.S81L 0.13 deleterious(0) probably_damaging(0.935) TCGA-IB-7893-01 3 51370621 51370621 G A DOCK3 Missense_Mutation p.R1183H 0.08 deleterious(0) probably_damaging(0.998) TCGA-IB-7893-01 4 126372829 126372829 C T FAT4 Missense_Mutation p.P3553L 0.21 possibly_damaging(0.507) TCGA-IB-7893-01 4 81791173 81791173 T A C4orf22 Missense_Mutation p.N137K 0.16 deleterious(0.02) possibly_damaging(0.646) TCGA-IB-7893-01 6 150164252 150164252 T C LRP11 Silent p.Q260Q 0.12 TCGA-IB-7893-01 6 36368246 36368246 A G PXT1 Silent p.H95H 0.25 TCGA-IB-7893-01 7 111503593 111503593 C T DOCK4 Missense_Mutation p.V770M 0.10 tolerated(0.11) possibly_damaging(0.657) TCGA-IB-7893-01 7 117250657 117250657 G A CFTR Missense_Mutation p.A1025T 0.09 tolerated(0.18) benign(0.006) TCGA-IB-7893-01 7 123349222 123349222 G A WASL Missense_Mutation p.S58L 0.09 tolerated(0.13) unknown(0) TCGA-IB-7893-01 7 6465643 6465643 G A DAGLB Silent p.F344F 0.19 TCGA-IB-7893-01 8 105360959 105360959 C T DCSTAMP Missense_Mutation p.A60V 0.28 tolerated(1) benign(0) TCGA-IB-7893-01 8 146032966 146032966 G A ZNF517 Missense_Mutation p.R222Q 0.19 tolerated(0.71) benign(0.408) TCGA-IB-7893-01 8 19363332 19363332 C T CSGALNACT1 Missense_Mutation p.R5H 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IB-7893-01 9 113205879 113205879 C A SVEP1 Missense_Mutation p.D1529Y 0.12 probably_damaging(0.999) TCGA-IB-7893-01 X 56590932 56590932 C G UBQLN2 Missense_Mutation p.P209R 0.15 deleterious(0.02) probably_damaging(0.953) TCGA-IB-7897-01 11 8123100 8123100 G A TUB Silent p.P540P 0.03 TCGA-IB-7897-01 14 69805396 69805396 T C GALNT16 Silent p.G332G 0.02 TCGA-IB-7897-01 17 79973120 79973120 G A ASPSCR1 Missense_Mutation p.G508D 0.04 tolerated_low_confidence(0.06) benign(0.389) TCGA-IB-7897-01 19 40398010 40398010 G A FCGBP Silent p.A2319A 0.04 TCGA-IB-7897-01 2 29295748 29295748 C T C2orf71 Silent p.G460G 0.03 TCGA-IB-7897-01 7 114298280 114298280 C T FOXP2 Nonsense_Mutation p.R501* 0.03 TCGA-IB-7897-01 X 151935609 151935609 G A MAGEA3 Silent p.Y186Y 0.02 TCGA-IB-8126-01 10 134997481 134997481 G A KNDC1 Missense_Mutation p.G205R 0.04 deleterious(0) probably_damaging(0.992) TCGA-IB-8126-01 11 72422096 72422096 G A ARAP1 Nonsense_Mutation p.R395* 0.05 TCGA-IB-8126-01 13 52439917 52439917 T A CCDC70 Missense_Mutation p.F135I 0.04 deleterious(0) probably_damaging(0.998) TCGA-IB-8126-01 15 43527834 43527834 G A TGM5 Missense_Mutation p.P516L 0.05 deleterious(0.03) benign(0.069) TCGA-IB-8126-01 16 28331735 28331735 G A SBK1 Silent p.A256A 0.06 TCGA-IB-8126-01 16 82131809 82131809 A G HSD17B2 Missense_Mutation p.N311S 0.04 tolerated(1) benign(0.002) TCGA-IB-8126-01 17 27613833 27613833 T C NUFIP2 Silent p.Q393Q 0.07 TCGA-IB-8126-01 17 61949520 61949520 T A CSH2 Missense_Mutation p.Q207L 0.04 deleterious(0) possibly_damaging(0.783) TCGA-IB-8126-01 17 78363984 78363984 G A RNF213 Missense_Mutation p.R5153H 0.04 benign(0.006) TCGA-IB-8126-01 1 175086325 175086325 C T TNN Silent p.D790D 0.04 TCGA-IB-8126-01 1 7796575 7796575 C T CAMTA1 Silent p.L1080L 0.04 TCGA-IB-8126-01 20 62196606 62196606 C T HELZ2 Missense_Mutation p.R1190H 0.41 deleterious(0.01) possibly_damaging(0.847) TCGA-IB-8126-01 8 143603440 143603440 C T BAI1 Missense_Mutation p.R1047C 0.05 deleterious(0) benign(0.031) TCGA-IB-8126-01 9 73151119 73151119 T C TRPM3 Missense_Mutation p.N1625S 0.04 tolerated_low_confidence(0.66) possibly_damaging(0.45) TCGA-IB-8126-01 X 1584602 1584602 G T P2RY8 Missense_Mutation p.L284I 0.04 tolerated(0.07) possibly_damaging(0.754) TCGA-IB-8126-01 X 70146816 70146816 C A SLC7A3 Missense_Mutation p.E454D 0.05 tolerated(0.09) benign(0.03) TCGA-IB-8127-01 10 99219804 99219804 T - MMS19 Frame_Shift_Del p.D886Mfs*2 0.27 TCGA-IB-8127-01 11 108199926 108199926 A G ATM Missense_Mutation p.E2423G 0.48 deleterious(0) possibly_damaging(0.753) TCGA-IB-8127-01 11 65268241 65268242 - T MALAT1 RNA 0.09 TCGA-IB-8127-01 11 74441968 74441968 G A CHRDL2 5'UTR 0.08 TCGA-IB-8127-01 12 108010914 108010914 G A BTBD11 Missense_Mutation p.E684K 0.14 deleterious(0.04) possibly_damaging(0.775) TCGA-IB-8127-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.40 deleterious(0) benign(0.361) TCGA-IB-8127-01 12 54379388 54379388 C T HOXC10 Silent p.S115S 0.21 TCGA-IB-8127-01 13 66879140 66879140 C A PCDH9 Nonsense_Mutation p.G1121* 0.19 TCGA-IB-8127-01 14 58927860 58927860 G T KIAA0586 Missense_Mutation p.V734L 0.22 tolerated(0.19) benign(0.078) TCGA-IB-8127-01 14 80328016 80328016 G A NRXN3 Silent p.T965T 0.11 TCGA-IB-8127-01 15 25436402 25436402 G T SNORD115-11 3'Flank 0.29 TCGA-IB-8127-01 16 12875142 12875142 C A CPPED1 Missense_Mutation p.Q63H 0.27 deleterious(0.02) benign(0.1) TCGA-IB-8127-01 16 19621689 19621689 G A C16orf62 Silent p.G414G 0.28 TCGA-IB-8127-01 16 34624140 34624140 G A RP11-488I20.3 RNA 0.22 TCGA-IB-8127-01 17 18653265 18653265 A G FBXW10 Intron 0.34 TCGA-IB-8127-01 17 37881332 37881332 G A ERBB2 Missense_Mutation p.V842I 0.19 deleterious(0) probably_damaging(0.998) TCGA-IB-8127-01 17 56437563 56437563 T C RNF43 Missense_Mutation p.D300G 0.30 deleterious(0) probably_damaging(1) TCGA-IB-8127-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.30 deleterious(0) probably_damaging(0.998) TCGA-IB-8127-01 17 8656711 8656711 G A SPDYE4 Silent p.F194F 0.16 TCGA-IB-8127-01 19 42480634 42480634 G A ATP1A3 Silent p.T689T 0.28 TCGA-IB-8127-01 19 43013097 43013097 A G CEACAM1 3'UTR 0.32 TCGA-IB-8127-01 19 5456673 5456673 C T ZNRF4 Missense_Mutation p.R391C 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-8127-01 1 1374492 1374492 G A VWA1 Silent p.T221T 0.09 TCGA-IB-8127-01 1 147131792 147131792 G A ACP6 Silent p.Y106Y 0.25 TCGA-IB-8127-01 1 152280068 152280068 C T FLG Missense_Mutation p.G2432R 0.26 possibly_damaging(0.636) TCGA-IB-8127-01 1 169510401 169510401 C T F5 Silent p.Q1309Q 0.25 TCGA-IB-8127-01 1 185902879 185902879 A G HMCN1 Missense_Mutation p.N584S 0.26 benign(0.001) TCGA-IB-8127-01 1 1961126 1961126 C T GABRD Silent p.Y328Y 0.12 TCGA-IB-8127-01 1 22925390 22925390 C T EPHA8 Silent p.A746A 0.14 TCGA-IB-8127-01 1 231351118 231351118 C T TRIM67 Intron 0.10 TCGA-IB-8127-01 1 26581980 26581980 C T CEP85 Missense_Mutation p.A176V 0.14 tolerated(0.54) benign(0.001) TCGA-IB-8127-01 1 31899619 31899619 C T SERINC2 Silent p.N252N 0.16 TCGA-IB-8127-01 20 31043974 31043974 C T C20orf112 Missense_Mutation p.G112S 0.26 tolerated(1) benign(0.004) TCGA-IB-8127-01 20 61867525 61867525 C T BIRC7 Missense_Mutation p.T26M 0.25 tolerated(0.42) benign(0.002) TCGA-IB-8127-01 2 113147089 113147089 G A RGPD8 Missense_Mutation p.R1145W 0.10 deleterious(0) possibly_damaging(0.67) TCGA-IB-8127-01 2 125367458 125367458 G A CNTNAP5 Missense_Mutation p.G612S 0.10 deleterious(0) probably_damaging(0.913) TCGA-IB-8127-01 2 141457900 141457900 G A LRP1B Nonsense_Mutation p.R2240* 0.24 TCGA-IB-8127-01 2 166911147 166911147 C T SCN1A Splice_Site p.X201_splice 0.22 TCGA-IB-8127-01 2 71036948 71036948 G A CLEC4F Silent p.I527I 0.20 TCGA-IB-8127-01 2 99226227 99226228 - A UNC50 Frame_Shift_Ins p.P3Tfs*45 0.24 TCGA-IB-8127-01 3 38627422 38627422 G A SCN5A Silent p.I849I 0.12 TCGA-IB-8127-01 4 24578266 24578266 C T DHX15 Missense_Mutation p.R36Q 0.39 tolerated_low_confidence(0.46) benign(0) TCGA-IB-8127-01 4 40045099 40045099 C T RP11-333E13.4 RNA 0.16 TCGA-IB-8127-01 4 44176848 44176848 G A KCTD8 Missense_Mutation p.R461C 0.14 deleterious(0.05) probably_damaging(0.985) TCGA-IB-8127-01 4 80327677 80327677 T A GK2 3'UTR 0.12 TCGA-IB-8127-01 5 140712339 140712339 G A PCDHGA1 Silent p.A696A 0.13 TCGA-IB-8127-01 5 140783647 140783647 C T PCDHGA9 Silent p.S376S 0.31 TCGA-IB-8127-01 5 160721244 160721244 C T GABRB2 Silent p.A461A 0.28 TCGA-IB-8127-01 6 401644 401644 C T IRF4 Silent p.D322D 0.34 TCGA-IB-8127-01 7 113518727 113518727 A C PPP1R3A Nonsense_Mutation p.L807* 0.25 TCGA-IB-8127-01 7 71252799 71252799 C T CALN1 Silent p.L249L 0.27 TCGA-IB-8127-01 9 131584646 131584646 C A ENDOG Silent p.V217V 0.11 TCGA-IB-8127-01 9 132640646 132640646 G A USP20 Silent p.S813S 0.23 TCGA-IB-8127-01 9 139739952 139739952 C T C9orf172 Silent p.P362P 0.20 TCGA-IB-8127-01 9 140880965 140880965 G A CACNA1B Missense_Mutation p.A624T 0.11 deleterious(0) benign(0.4) TCGA-IB-8127-01 9 21971096 21971096 C A CDKN2A Nonsense_Mutation p.E88* 0.31 TCGA-IB-8127-01 9 96080243 96080243 G A WNK2 Silent p.P2276P 0.27 TCGA-IB-8127-01 X 105277592 105277592 G A SERPINA7 Missense_Mutation p.P383S 0.49 tolerated(0.14) benign(0.128) TCGA-IB-A5SO-01 10 102748967 102748967 C T C10orf2 Nonsense_Mutation p.R334* 0.08 TCGA-IB-A5SO-01 10 75056711 75056711 T C TTC18 Intron 0.10 TCGA-IB-A5SO-01 11 130319167 130319167 G A ADAMTS15 Missense_Mutation p.R100H 0.11 tolerated(0.33) benign(0.052) TCGA-IB-A5SO-01 11 18754215 18754215 G A PTPN5 Missense_Mutation p.A418V 0.06 tolerated(0.59) benign(0) TCGA-IB-A5SO-01 11 722406 722406 C T EPS8L2 Silent p.V355V 0.08 TCGA-IB-A5SO-01 11 92523233 92523233 G A FAT3 Missense_Mutation p.R1487K 0.09 benign(0.147) TCGA-IB-A5SO-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.11 deleterious(0) benign(0.361) TCGA-IB-A5SO-01 14 47120233 47120233 G T RPL10L 3'UTR 0.07 TCGA-IB-A5SO-01 15 48063190 48063190 G A SEMA6D Silent p.P810P 0.06 TCGA-IB-A5SO-01 15 54916007 54916007 G A UNC13C Missense_Mutation p.D2072N 0.11 tolerated_low_confidence(0.35) benign(0.003) TCGA-IB-A5SO-01 15 82530841 82530841 G A EFTUD1 Missense_Mutation p.L180F 0.07 tolerated(0.09) possibly_damaging(0.501) TCGA-IB-A5SO-01 16 67904796 67904796 G A NUTF2 Missense_Mutation p.A122T 0.05 tolerated(0.14) benign(0.009) TCGA-IB-A5SO-01 16 81077602 81077624 GTCCAACGGATGACCATGTACAG - ATMIN Frame_Shift_Del p.S500Nfs*12 0.16 TCGA-IB-A5SO-01 17 44060672 44060672 C T MAPT Missense_Mutation p.R168C 0.08 tolerated(0.2) benign(0.003) TCGA-IB-A5SO-01 17 74309083 74309083 G A PRPSAP1 Silent p.D289D 0.09 TCGA-IB-A5SO-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.08 TCGA-IB-A5SO-01 19 39109867 39109867 A G EIF3K 5'UTR 0.10 TCGA-IB-A5SO-01 19 43441294 43441294 C T PSG7 5'UTR 0.12 TCGA-IB-A5SO-01 19 48837419 48837419 C G TMEM143 Missense_Mutation p.E337D 0.10 tolerated(0.21) benign(0.078) TCGA-IB-A5SO-01 19 50473370 50473370 G A SIGLEC16 RNA 0.07 TCGA-IB-A5SO-01 19 9964860 9964860 G C OLFM2 3'UTR 0.06 TCGA-IB-A5SO-01 1 34011733 34011733 G A CSMD2 Missense_Mutation p.R2858C 0.10 tolerated(0.18) probably_damaging(0.913) TCGA-IB-A5SO-01 1 68615942 68615942 C T WLS Missense_Mutation p.D299N 0.11 deleterious(0) probably_damaging(1) TCGA-IB-A5SO-01 20 2397961 2397961 C T TGM6 Missense_Mutation p.R474C 0.07 deleterious(0.05) possibly_damaging(0.696) TCGA-IB-A5SO-01 20 24954286 24954286 G - APMAP Frame_Shift_Del p.P139Lfs*37 0.15 TCGA-IB-A5SO-01 21 38269180 38269180 T C HLCS Silent p.T477T 0.08 TCGA-IB-A5SO-01 2 198498522 198498522 T C RFTN2 Missense_Mutation p.E213G 0.08 tolerated(0.07) benign(0.149) TCGA-IB-A5SO-01 2 25505560 25505560 T C DNMT3A Silent p.P66P 0.05 TCGA-IB-A5SO-01 3 100365497 100365497 C T GPR128 Nonsense_Mutation p.Q399* 0.09 TCGA-IB-A5SO-01 3 30715708 30715708 G T TGFBR2 Nonsense_Mutation p.E481* 0.08 TCGA-IB-A5SO-01 3 47889357 47889358 AT - DHX30 Frame_Shift_Del p.I733Cfs*2 0.15 TCGA-IB-A5SO-01 3 48677390 48677390 G A CELSR3 Missense_Mutation p.R3210W 0.11 deleterious_low_confidence(0) possibly_damaging(0.487) TCGA-IB-A5SO-01 3 50085685 50085685 T G RBM6 Missense_Mutation p.L522R 0.12 deleterious(0) probably_damaging(0.965) TCGA-IB-A5SO-01 4 7716916 7716916 C T SORCS2 Silent p.Y710Y 0.08 TCGA-IB-A5SO-01 5 156590199 156590199 C T FAM71B Silent p.S359S 0.10 TCGA-IB-A5SO-01 6 132649632 132649632 G A MOXD1 Silent p.H255H 0.04 TCGA-IB-A5SO-01 7 23792437 23792437 A G STK31 Missense_Mutation p.I373M 0.10 tolerated(0.14) benign(0.004) TCGA-IB-A5SO-01 8 55539165 55539165 C G RP1 Missense_Mutation p.A908G 0.09 tolerated(0.12) benign(0.355) TCGA-IB-A5SO-01 9 139835466 139835466 G A FBXW5 Missense_Mutation p.R539C 0.17 deleterious(0) probably_damaging(0.999) TCGA-IB-A5SO-01 9 77752511 77752511 G A OSTF1 Missense_Mutation p.V156I 0.09 tolerated(0.09) possibly_damaging(0.782) TCGA-IB-A5SO-01 X 140785682 140785682 G C SPANXD Missense_Mutation p.N78K 0.10 deleterious(0.01) probably_damaging(0.995) TCGA-IB-A5SP-01 10 55912915 55912915 G A PCDH15 Missense_Mutation p.R577W 0.40 deleterious(0) possibly_damaging(0.901) TCGA-IB-A5SP-01 10 74828652 74828652 C A P4HA1 Missense_Mutation p.D139Y 0.39 deleterious(0) probably_damaging(1) TCGA-IB-A5SP-01 10 8100716 8100716 C A GATA3 Missense_Mutation p.S230R 0.19 tolerated(0.15) benign(0.394) TCGA-IB-A5SP-01 11 19077764 19077764 G A MRGPRX2 Silent p.N62N 0.13 TCGA-IB-A5SP-01 11 82645017 82645017 A C C11orf82 Silent p.G879G 0.12 TCGA-IB-A5SP-01 12 124428832 124428832 C T CCDC92 Silent p.S7S 0.35 TCGA-IB-A5SP-01 12 133365860 133365860 T G GOLGA3 Missense_Mutation p.Y855S 0.04 tolerated(0.14) probably_damaging(1) TCGA-IB-A5SP-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.58 deleterious(0) benign(0.361) TCGA-IB-A5SP-01 12 2716164 2716164 C T CACNA1C Missense_Mutation p.T1095M 0.48 tolerated(0.15) benign(0.006) TCGA-IB-A5SP-01 12 44782362 44782362 C T TMEM117 Silent p.T484T 0.37 TCGA-IB-A5SP-01 12 46326986 46326986 C T SCAF11 Missense_Mutation p.S221N 0.33 tolerated(0.66) benign(0.006) TCGA-IB-A5SP-01 12 49427251 49427265 TGCTGCTGCTGCTGT - KMT2D In_Frame_Del p.Q3741_Q3745del 0.38 TCGA-IB-A5SP-01 13 114773065 114773065 C T RASA3 Silent p.S562S 0.39 TCGA-IB-A5SP-01 14 104642766 104642766 C T KIF26A Missense_Mutation p.P1214L 0.33 tolerated(0.37) benign(0.003) TCGA-IB-A5SP-01 15 43827457 43827457 G A PPIP5K1 Silent p.S1239S 0.37 TCGA-IB-A5SP-01 15 63032911 63032911 C T TLN2 Missense_Mutation p.S1323F 0.24 deleterious(0.05) benign(0.035) TCGA-IB-A5SP-01 16 14014215 14014215 C T ERCC4 Nonsense_Mutation p.Q65* 0.47 TCGA-IB-A5SP-01 17 18023559 18023559 G A MYO15A Missense_Mutation p.R482Q 0.13 benign(0.238) TCGA-IB-A5SP-01 17 41020316 41020316 G A AOC4P RNA 0.13 TCGA-IB-A5SP-01 17 7577559 7577559 G A TP53 Missense_Mutation p.S241F 0.51 deleterious(0) probably_damaging(1) TCGA-IB-A5SP-01 18 48604761 48604764 ACTT - SMAD4 Frame_Shift_Del p.L529Tfs*7 0.60 TCGA-IB-A5SP-01 18 55103544 55103544 G C ONECUT2 Missense_Mutation p.R199P 0.48 deleterious(0.03) benign(0.136) TCGA-IB-A5SP-01 19 11891903 11891903 A G ZNF441 Missense_Mutation p.K422E 0.39 deleterious(0.04) probably_damaging(0.973) TCGA-IB-A5SP-01 19 9057140 9057140 C A MUC16 Missense_Mutation p.M10102I 0.32 benign(0.001) TCGA-IB-A5SP-01 19 9089947 9089947 G T MUC16 Missense_Mutation p.T623K 0.33 unknown(0) TCGA-IB-A5SP-01 1 155642358 155642358 C T YY1AP1 Silent p.K330K 0.25 TCGA-IB-A5SP-01 1 202702804 202702804 C A KDM5B Missense_Mutation p.G1212C 0.48 deleterious(0.02) possibly_damaging(0.676) TCGA-IB-A5SP-01 1 215933091 215933091 T C USH2A Silent p.Q3714Q 0.26 TCGA-IB-A5SP-01 1 242253380 242253380 G C PLD5 Missense_Mutation p.Q463E 0.29 tolerated(0.29) benign(0.152) TCGA-IB-A5SP-01 1 27687469 27687469 C T MAP3K6 Silent p.T621T 0.17 TCGA-IB-A5SP-01 20 42694515 42694515 G A TOX2 Missense_Mutation p.R375Q 0.36 tolerated(0.32) probably_damaging(0.982) TCGA-IB-A5SP-01 20 51871857 51871857 C T TSHZ2 Silent p.H620H 0.33 TCGA-IB-A5SP-01 21 10969096 10969096 C T TPTE Missense_Mutation p.R51Q 0.23 tolerated(0.67) benign(0.001) TCGA-IB-A5SP-01 21 46951654 46951654 C T SLC19A1 Missense_Mutation p.A200T 0.54 tolerated(0.5) benign(0.063) TCGA-IB-A5SP-01 22 50281008 50281008 C T ZBED4 3'UTR 0.67 TCGA-IB-A5SP-01 2 135012053 135012053 A G MGAT5 Missense_Mutation p.M27V 0.35 tolerated(0.1) benign(0.424) TCGA-IB-A5SP-01 2 167313539 167313540 - A SCN7A Frame_Shift_Ins p.S378Kfs*21 0.33 TCGA-IB-A5SP-01 2 179436286 179436286 A T TTN Missense_Mutation p.I24858N 0.32 TCGA-IB-A5SP-01 2 237103689 237103689 C T ASB18 Silent p.P409P 0.35 TCGA-IB-A5SP-01 3 168833756 168833762 TTATTAT - MECOM Frame_Shift_Del p.N510Rfs*14 0.49 TCGA-IB-A5SP-01 4 100460491 100460491 T C C4orf17 Missense_Mutation p.V267A 0.07 tolerated(0.18) benign(0.034) TCGA-IB-A5SP-01 4 41937451 41937454 CTTT - TMEM33 5'UTR 0.69 TCGA-IB-A5SP-01 4 44724119 44724120 - A GNPDA2 Frame_Shift_Ins p.T36Yfs*15 0.43 TCGA-IB-A5SP-01 4 80328648 80328648 G C GK2 Missense_Mutation p.S236C 0.08 tolerated(0.05) possibly_damaging(0.448) TCGA-IB-A5SP-01 5 128983486 128983486 G A ADAMTS19 Missense_Mutation p.R628K 0.37 tolerated(1) benign(0.002) TCGA-IB-A5SP-01 5 140166589 140166589 C T PCDHA1 Silent p.N238N 0.38 TCGA-IB-A5SP-01 5 177688748 177688748 C A COL23A1 Missense_Mutation p.G226V 0.38 deleterious(0) probably_damaging(0.999) TCGA-IB-A5SP-01 6 146755420 146755420 C G GRM1 Missense_Mutation p.P1025A 0.25 tolerated_low_confidence(0.34) benign(0.001) TCGA-IB-A5SP-01 6 26124800 26124800 G T HIST1H2AC Missense_Mutation p.A114S 0.09 tolerated_low_confidence(0.23) benign(0.002) TCGA-IB-A5SP-01 6 7230570 7230570 C - RREB1 Frame_Shift_Del p.D746Efs*167 0.52 TCGA-IB-A5SP-01 7 18668998 18668998 G A HDAC9 Silent p.R230R 0.33 TCGA-IB-A5SP-01 7 73474290 73474290 T G ELN Missense_Mutation p.L497V 0.25 unknown(0) TCGA-IB-A5SP-01 8 26237686 26237686 T C BNIP3L 5'Flank 0.04 TCGA-IB-A5SP-01 9 79118080 79118080 C T GCNT1 Silent p.V261V 0.29 TCGA-IB-A5SP-01 9 84608089 84608089 A T SPATA31D1 Missense_Mutation p.M902L 0.34 tolerated(0.07) possibly_damaging(0.525) TCGA-IB-A5SP-01 9 98678110 98678110 T A ERCC6L2 Missense_Mutation p.W328R 0.39 deleterious(0) possibly_damaging(0.812) TCGA-IB-A5SP-01 X 34150174 34150174 G A FAM47A Silent p.D74D 0.70 TCGA-IB-A5SP-01 X 44894229 44894232 AAGT - KDM6A Splice_Site p.X207_splice 0.79 TCGA-IB-A5SQ-01 11 110108327 110108327 G A RDX Nonsense_Mutation p.R381* 0.07 TCGA-IB-A5SQ-01 11 55761879 55761879 T G OR5F1 Missense_Mutation p.T75P 0.10 deleterious(0) benign(0.254) TCGA-IB-A5SQ-01 11 85468696 85468696 G A SYTL2 Silent p.L25L 0.08 TCGA-IB-A5SQ-01 12 11138881 11138881 T C TAS2R50 Missense_Mutation p.I193M 0.06 tolerated(0.14) possibly_damaging(0.467) TCGA-IB-A5SQ-01 12 123868737 123868737 A C SETD8 5'UTR 0.04 TCGA-IB-A5SQ-01 12 21015401 21015401 G A SLCO1B3 Missense_Mutation p.M179I 0.05 tolerated(0.09) benign(0.1) TCGA-IB-A5SQ-01 12 6933844 6933844 G A GPR162 Silent p.S260S 0.06 TCGA-IB-A5SQ-01 12 7635290 7635290 C A CD163 Missense_Mutation p.V1066F 0.08 tolerated(0.29) benign(0.002) TCGA-IB-A5SQ-01 13 25262530 25262530 C A ATP12A Missense_Mutation p.T101K 0.07 tolerated(0.05) possibly_damaging(0.648) TCGA-IB-A5SQ-01 14 71134284 71134284 G T TTC9 Missense_Mutation p.C137F 0.05 deleterious(0) probably_damaging(0.997) TCGA-IB-A5SQ-01 14 94394668 94394668 T G FAM181A Missense_Mutation p.F75V 0.05 deleterious(0) probably_damaging(0.999) TCGA-IB-A5SQ-01 15 38643373 38643373 G C SPRED1 Missense_Mutation p.Q281H 0.10 tolerated(0.96) benign(0.001) TCGA-IB-A5SQ-01 16 24942323 24942323 A G ARHGAP17 Missense_Mutation p.L766P 0.09 tolerated_low_confidence(0.06) possibly_damaging(0.766) TCGA-IB-A5SQ-01 16 90161014 90161014 G A TUBB8P7 Intron 0.04 TCGA-IB-A5SQ-01 19 11143994 11143994 G A SMARCA4 Missense_Mutation p.R1192H 0.04 probably_damaging(1) TCGA-IB-A5SQ-01 19 14581660 14581660 C T PKN1 Silent p.F880F 0.07 TCGA-IB-A5SQ-01 19 4283173 4283173 C T SHD Missense_Mutation p.R176W 0.07 deleterious(0) probably_damaging(0.983) TCGA-IB-A5SQ-01 19 51527499 51527499 C T KLK11 Missense_Mutation p.A121T 0.04 deleterious(0.03) probably_damaging(0.987) TCGA-IB-A5SQ-01 19 53848784 53848784 C T ZNF845 Missense_Mutation p.A14V 0.05 deleterious(0.03) probably_damaging(0.989) TCGA-IB-A5SQ-01 1 228210456 228210456 C T WNT3A Missense_Mutation p.R54C 0.09 deleterious(0) probably_damaging(0.987) TCGA-IB-A5SQ-01 1 27107212 27107213 - TT ARID1A Frame_Shift_Ins p.C2276Ffs*7 0.11 TCGA-IB-A5SQ-01 1 39833893 39833893 C T MACF1 Missense_Mutation p.S2220F 0.07 possibly_damaging(0.473) TCGA-IB-A5SQ-01 20 61834082 61834082 G A YTHDF1 Missense_Mutation p.R404C 0.06 deleterious(0) probably_damaging(0.996) TCGA-IB-A5SQ-01 21 15882757 15882757 A G SAMSN1 Silent p.G213G 0.08 TCGA-IB-A5SQ-01 21 34634926 34634926 C A IFNAR2 Intron 0.10 TCGA-IB-A5SQ-01 2 220104663 220104663 T G GLB1L Missense_Mutation p.T234P 0.07 deleterious(0.02) possibly_damaging(0.906) TCGA-IB-A5SQ-01 2 225659771 225659771 C T DOCK10 Missense_Mutation p.R1660H 0.08 deleterious(0) possibly_damaging(0.849) TCGA-IB-A5SQ-01 2 24297040 24297040 G A SF3B14 Missense_Mutation p.R19W 0.10 deleterious(0.04) possibly_damaging(0.722) TCGA-IB-A5SQ-01 2 74317154 74317154 G A TET3 Missense_Mutation p.A872T 0.08 tolerated(0.33) benign(0.003) TCGA-IB-A5SQ-01 2 95767442 95767442 G A MRPS5 Missense_Mutation p.R264W 0.06 tolerated(0.1) probably_damaging(0.932) TCGA-IB-A5SQ-01 3 13377062 13377062 G A NUP210 Silent p.G1245G 0.10 TCGA-IB-A5SQ-01 4 148944528 148944528 G A ARHGAP10 Missense_Mutation p.V611M 0.07 tolerated(0.12) benign(0.012) TCGA-IB-A5SQ-01 4 17488811 17488811 G A QDPR Silent p.S226S 0.07 TCGA-IB-A5SQ-01 4 57180336 57180336 G A KIAA1211 Missense_Mutation p.R223H 0.06 tolerated(0.56) benign(0.082) TCGA-IB-A5SQ-01 4 68995528 68995528 G A TMPRSS11F Missense_Mutation p.A4V 0.07 tolerated_low_confidence(0.28) benign(0.054) TCGA-IB-A5SQ-01 5 176562809 176562809 A G NSD1 Silent p.T235T 0.08 TCGA-IB-A5SQ-01 5 31421389 31421389 C - DROSHA Frame_Shift_Del p.G1172Dfs*3 0.12 TCGA-IB-A5SQ-01 6 127796643 127796643 G A SOGA3 Missense_Mutation p.A843V 0.04 deleterious(0.02) benign(0.18) TCGA-IB-A5SQ-01 6 29408019 29408019 C T OR10C1 Missense_Mutation p.T76M 0.07 tolerated(0.05) benign(0.01) TCGA-IB-A5SQ-01 6 44144381 44144381 C T CAPN11 Silent p.D355D 0.08 TCGA-IB-A5SQ-01 7 128482291 128482294 GACG - FLNC Frame_Shift_Del p.D710Afs*8 0.13 TCGA-IB-A5SQ-01 7 142197600 142197600 G A TRBV11-2 RNA 0.04 TCGA-IB-A5SQ-01 7 143096794 143096794 C T EPHA1 Missense_Mutation p.C262Y 0.08 deleterious(0) probably_damaging(0.963) TCGA-IB-A5SQ-01 7 21882220 21882220 C G DNAH11 Missense_Mutation p.H3591D 0.06 probably_damaging(0.948) TCGA-IB-A5SQ-01 8 139165382 139165382 C T FAM135B Missense_Mutation p.D446N 0.08 deleterious(0.02) benign(0.103) TCGA-IB-A5SQ-01 8 144996470 144996470 G A PLEC Missense_Mutation p.R2644C 0.11 probably_damaging(0.973) TCGA-IB-A5SQ-01 8 65494555 65494555 C A BHLHE22 3'UTR 0.18 TCGA-IB-A5SQ-01 8 88885063 88885063 T C DCAF4L2 Silent p.P379P 0.13 TCGA-IB-A5SQ-01 9 134379582 134379582 T A POMT1 5'UTR 0.07 TCGA-IB-A5SQ-01 X 54957327 54957327 G A TRO Silent p.P1390P 0.05 TCGA-IB-A5SQ-01 X 85969723 85969723 G T DACH2 Missense_Mutation p.K368N 0.08 deleterious(0.03) probably_damaging(0.954) TCGA-IB-A5SS-01 10 43014691 43014691 T C ZNF37BP RNA 0.52 TCGA-IB-A5SS-01 10 85991943 85991943 C T LRIT1 Missense_Mutation p.V538I 0.16 tolerated(0.2) benign(0.021) TCGA-IB-A5SS-01 11 121428026 121428026 G A SORL1 Missense_Mutation p.A859T 0.24 tolerated(0.17) benign(0.347) TCGA-IB-A5SS-01 11 64684636 64684636 C T ATG2A 5'UTR 0.18 TCGA-IB-A5SS-01 12 117662845 117662845 G A NOS1 Missense_Mutation p.R1302W 0.33 deleterious(0.01) probably_damaging(1) TCGA-IB-A5SS-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.15 deleterious(0) benign(0.361) TCGA-IB-A5SS-01 12 53895234 53895234 C T TARBP2 Silent p.C14C 0.10 TCGA-IB-A5SS-01 12 59277344 59277344 A - LRIG3 Frame_Shift_Del p.L425Yfs*9 0.27 TCGA-IB-A5SS-01 14 106993936 106993936 T A IGHV3-48 Missense_Mutation p.I77L 0.33 deleterious_low_confidence(0.01) benign(0.003) TCGA-IB-A5SS-01 14 24114078 24114078 C A DHRS2 Silent p.I243I 0.17 TCGA-IB-A5SS-01 15 102294696 102294696 C T DNM1P47 RNA 0.10 TCGA-IB-A5SS-01 15 60747571 60747571 A G NARG2 Missense_Mutation p.I246T 0.24 tolerated(0.15) benign(0.003) TCGA-IB-A5SS-01 16 2136297 2136297 C T TSC2 Missense_Mutation p.P1589L 0.37 deleterious(0) probably_damaging(1) TCGA-IB-A5SS-01 16 23226527 23226527 C T SCNN1G Missense_Mutation p.R563C 0.24 tolerated(0.18) probably_damaging(1) TCGA-IB-A5SS-01 17 40467751 40467751 G A STAT3 3'UTR 0.21 TCGA-IB-A5SS-01 17 40832279 40832279 G C CCR10 Silent p.G127G 0.19 TCGA-IB-A5SS-01 17 73125037 73125037 C A ARMC7 Missense_Mutation p.F167L 0.18 tolerated(0.23) benign(0) TCGA-IB-A5SS-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.34 deleterious(0) probably_damaging(0.997) TCGA-IB-A5SS-01 17 7752044 7752044 G A KDM6B Missense_Mutation p.G813E 0.29 probably_damaging(0.969) TCGA-IB-A5SS-01 18 13826098 13826098 C T MC5R Missense_Mutation p.R112C 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-IB-A5SS-01 18 48604697 48604698 AA - SMAD4 Frame_Shift_Del p.K507Rfs*19 0.34 TCGA-IB-A5SS-01 19 35753550 35753550 G A LSR Missense_Mutation p.V293I 0.17 tolerated(0.16) probably_damaging(0.997) TCGA-IB-A5SS-01 19 37643142 37643142 G A ZNF585A Silent p.H498H 0.19 TCGA-IB-A5SS-01 19 41123123 41123123 C G LTBP4 Missense_Mutation p.H1087Q 0.12 tolerated(0.14) probably_damaging(0.966) TCGA-IB-A5SS-01 19 55333120 55333120 G A KIR3DL1 Missense_Mutation p.M252I 0.33 tolerated(0.36) benign(0.002) TCGA-IB-A5SS-01 1 176926840 176926840 G A ASTN1 Missense_Mutation p.R621C 0.29 deleterious(0) probably_damaging(0.995) TCGA-IB-A5SS-01 1 221057751 221057751 C T HLX Missense_Mutation p.T391M 0.25 deleterious(0) possibly_damaging(0.704) TCGA-IB-A5SS-01 20 58574705 58574705 C T CDH26 Missense_Mutation p.T695M 0.17 tolerated(0.14) benign(0.016) TCGA-IB-A5SS-01 22 40042649 40042649 C T CACNA1I Missense_Mutation p.H409Y 0.21 deleterious(0) probably_damaging(0.921) TCGA-IB-A5SS-01 3 138382857 138382857 C T PIK3CB Missense_Mutation p.R896Q 0.21 tolerated(0.37) benign(0.094) TCGA-IB-A5SS-01 3 30875345 30875345 A T GADL1 Silent p.S350S 0.20 TCGA-IB-A5SS-01 3 74351867 74351867 G T CNTN3 Nonsense_Mutation p.S587* 0.24 TCGA-IB-A5SS-01 3 74351868 74351868 A T CNTN3 Missense_Mutation p.S587T 0.24 deleterious(0.02) possibly_damaging(0.755) TCGA-IB-A5SS-01 4 157684176 157684176 C T PDGFC 3'UTR 0.19 TCGA-IB-A5SS-01 5 140188813 140188813 C T PCDHA4 Missense_Mutation p.R681W 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.841) TCGA-IB-A5SS-01 5 140810888 140810888 G A PCDHGA12 Missense_Mutation p.G188S 0.20 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-IB-A5SS-01 5 141243880 141243880 G A PCDH1 Silent p.S672S 0.23 TCGA-IB-A5SS-01 5 179538479 179538479 G A RASGEF1C Silent p.T427T 0.21 TCGA-IB-A5SS-01 5 33984521 33984521 C G SLC45A2 Silent p.V56V 0.23 TCGA-IB-A5SS-01 5 87502295 87502295 C A TMEM161B Missense_Mutation p.S207I 0.11 deleterious(0) possibly_damaging(0.583) TCGA-IB-A5SS-01 7 21657266 21657266 C A DNAH11 Silent p.R1380R 0.21 TCGA-IB-A5SS-01 8 13947958 13947958 C T SGCZ Nonsense_Mutation p.W311* 0.19 TCGA-IB-A5SS-01 9 128000914 128000914 C T HSPA5 Missense_Mutation p.G397S 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-IB-A5SS-01 9 132084600 132084600 C A C9orf106 RNA 0.23 TCGA-IB-A5SS-01 9 138557549 138557549 C T LCN9 Silent p.C142C 0.20 TCGA-IB-A5SS-01 9 21206709 21206709 C T IFNA10 Missense_Mutation p.E130K 0.18 tolerated(0.14) benign(0.192) TCGA-IB-A5SS-01 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.23 TCGA-IB-A5SS-01 9 35555589 35555589 T A RUSC2 Missense_Mutation p.H849Q 0.25 tolerated(0.11) probably_damaging(0.993) TCGA-IB-A5SS-01 9 37349387 37349387 C T ZCCHC7 Missense_Mutation p.P341S 0.21 tolerated(0.77) benign(0.424) TCGA-IB-A5SS-01 X 72299344 72299344 G A PABPC1L2A 5'UTR 0.13 TCGA-IB-A5ST-01 10 7679231 7679231 C T ITIH5 Silent p.P204P 0.03 TCGA-IB-A5ST-01 11 111428363 111428363 A G LAYN Silent p.R260R 0.03 TCGA-IB-A5ST-01 11 3697456 3697456 T C NUP98 Missense_Mutation p.Y1779C 0.03 deleterious(0) probably_damaging(0.999) TCGA-IB-A5ST-01 11 88911586 88911586 C A TYR Silent p.T155T 0.04 TCGA-IB-A5ST-01 15 75968972 75968972 T A CSPG4 Missense_Mutation p.Q1963L 0.04 tolerated(0.06) benign(0.028) TCGA-IB-A5ST-01 1 154072575 154072575 C T NUP210L Missense_Mutation p.A622T 0.03 tolerated(0.38) benign(0.017) TCGA-IB-A5ST-01 1 230928629 230928629 G A CAPN9 Missense_Mutation p.G609S 0.04 deleterious(0.01) probably_damaging(1) TCGA-IB-A5ST-01 1 248309150 248309150 G A OR2M5 Missense_Mutation p.R234H 0.03 tolerated(0.11) benign(0.013) TCGA-IB-A5ST-01 1 94543309 94543309 G A ABCA4 Silent p.F497F 0.03 TCGA-IB-A5ST-01 2 27804824 27804824 G C C2orf16 Missense_Mutation p.E1795D 0.03 tolerated(0.25) unknown(0) TCGA-IB-A5ST-01 5 79855633 79855633 T C ANKRD34B Missense_Mutation p.Y69C 0.03 deleterious(0) probably_damaging(1) TCGA-IB-A6UF-01 10 104117903 104117903 G T GBF1 Silent p.L249L 0.23 TCGA-IB-A6UF-01 10 108412204 108412204 G A SORCS1 Missense_Mutation p.T804M 0.30 deleterious(0.01) probably_damaging(0.981) TCGA-IB-A6UF-01 10 26589858 26589858 G A GAD2 Missense_Mutation p.E576K 0.07 deleterious(0.03) benign(0.032) TCGA-IB-A6UF-01 10 27702453 27702453 G A PTCHD3 Missense_Mutation p.R243W 0.26 deleterious(0.01) benign(0.065) TCGA-IB-A6UF-01 10 48388884 48388884 C T RBP3 Missense_Mutation p.R665Q 0.26 tolerated(0.72) benign(0.238) TCGA-IB-A6UF-01 10 95720901 95720901 G A PIPSL RNA 0.24 TCGA-IB-A6UF-01 10 98764503 98764503 G C SLIT1 Silent p.G1219G 0.30 TCGA-IB-A6UF-01 11 107526732 107526732 A T ELMOD1 Missense_Mutation p.T258S 0.43 tolerated(0.54) possibly_damaging(0.559) TCGA-IB-A6UF-01 11 26463589 26463589 C A ANO3 Missense_Mutation p.F57L 0.28 tolerated_low_confidence(0.65) benign(0) TCGA-IB-A6UF-01 11 58317463 58317463 C T LPXN Missense_Mutation p.A220T 0.30 tolerated(0.15) possibly_damaging(0.716) TCGA-IB-A6UF-01 11 64031069 64031070 GG T PLCB3 Splice_Site p.X819_splice 0.24 TCGA-IB-A6UF-01 11 68675791 68675791 C - IGHMBP2 Frame_Shift_Del p.Y145* 0.14 TCGA-IB-A6UF-01 11 85989338 85989338 C T EED Intron 0.30 TCGA-IB-A6UF-01 12 117904983 117904983 C T KSR2 3'UTR 0.26 TCGA-IB-A6UF-01 12 1292488 1292488 A - ERC1 Frame_Shift_Del p.S687Pfs*4 0.37 TCGA-IB-A6UF-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.38 deleterious(0.03) benign(0.376) TCGA-IB-A6UF-01 12 52183167 52183167 G T SCN8A Missense_Mutation p.V1462F 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-IB-A6UF-01 12 54448134 54448134 A G HOXC4 Missense_Mutation p.H143R 0.26 deleterious(0) benign(0.387) TCGA-IB-A6UF-01 12 7187985 7187985 C T C1R Missense_Mutation p.V605I 0.46 deleterious(0.05) possibly_damaging(0.728) TCGA-IB-A6UF-01 12 81839441 81839441 G A PPFIA2 Missense_Mutation p.T155M 0.29 deleterious(0) probably_damaging(0.999) TCGA-IB-A6UF-01 13 19751421 19751421 G A TUBA3C Silent p.I234I 0.30 TCGA-IB-A6UF-01 13 30002979 30002979 G A MTUS2 Intron 0.22 TCGA-IB-A6UF-01 14 34269655 34269655 G A NPAS3 Silent p.S714S 0.07 TCGA-IB-A6UF-01 14 92959992 92959992 G A SLC24A4 3'UTR 0.23 TCGA-IB-A6UF-01 15 65681260 65681260 G A IGDCC4 Missense_Mutation p.R865W 0.44 deleterious(0.02) probably_damaging(0.953) TCGA-IB-A6UF-01 16 27659970 27659970 G A KIAA0556 Missense_Mutation p.E152K 0.25 tolerated(0.74) benign(0.026) TCGA-IB-A6UF-01 16 3293588 3293588 C T MEFV Silent p.P633P 0.30 TCGA-IB-A6UF-01 17 52978063 52978063 G T TOM1L1 5'UTR 0.44 TCGA-IB-A6UF-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.43 tolerated(0.13) possibly_damaging(0.631) TCGA-IB-A6UF-01 17 80788076 80788076 G A ZNF750 Missense_Mutation p.A705V 0.43 tolerated(0.73) benign(0.008) TCGA-IB-A6UF-01 18 33952645 33952645 G A FHOD3 Missense_Mutation p.R92Q 0.38 deleterious(0.01) probably_damaging(0.964) TCGA-IB-A6UF-01 18 3452216 3452216 C - TGIF1 Frame_Shift_Del p.P82Lfs*52 0.13 TCGA-IB-A6UF-01 19 31768582 31768582 G A TSHZ3 Missense_Mutation p.T706M 0.30 tolerated(0.1) probably_damaging(0.996) TCGA-IB-A6UF-01 19 45316707 45316707 C A BCAM Missense_Mutation p.T205N 0.27 deleterious(0.01) possibly_damaging(0.738) TCGA-IB-A6UF-01 1 161197719 161197719 C T TOMM40L Missense_Mutation p.R142W 0.16 deleterious(0) probably_damaging(0.997) TCGA-IB-A6UF-01 1 173526501 173526501 C T SLC9C2 Missense_Mutation p.R398Q 0.24 tolerated(1) benign(0.003) TCGA-IB-A6UF-01 1 192779364 192779364 C T RGS2 Missense_Mutation p.T60I 0.18 tolerated(0.14) benign(0.006) TCGA-IB-A6UF-01 1 208084372 208084372 G A CD34 Silent p.T18T 0.24 TCGA-IB-A6UF-01 1 212798637 212798637 C T FAM71A Missense_Mutation p.R140C 0.47 deleterious(0) probably_damaging(1) TCGA-IB-A6UF-01 1 235324634 235324647 CCGGCAGTCGGCCG - RBM34 5'UTR 0.60 TCGA-IB-A6UF-01 1 44054537 44054537 T C PTPRF Missense_Mutation p.L272P 0.33 deleterious(0) probably_damaging(1) TCGA-IB-A6UF-01 20 50769918 50769918 G A ZFP64 Silent p.S271S 0.23 TCGA-IB-A6UF-01 20 9546990 9546990 C G PAK7 Silent p.L344L 0.38 TCGA-IB-A6UF-01 21 32513695 32513695 C A TIAM1 Missense_Mutation p.R1201S 0.40 deleterious(0) benign(0.039) TCGA-IB-A6UF-01 22 25124284 25124284 G A PIWIL3 Silent p.L598L 0.39 TCGA-IB-A6UF-01 2 176981813 176981813 G A HOXD10 Silent p.P84P 0.22 TCGA-IB-A6UF-01 2 226446914 226446914 G A NYAP2 Missense_Mutation p.D261N 0.28 deleterious(0.02) benign(0.127) TCGA-IB-A6UF-01 2 65540499 65540499 C T SPRED2 3'UTR 0.28 TCGA-IB-A6UF-01 3 122345673 122345673 G - PARP15 Splice_Site p.X411_splice 0.25 TCGA-IB-A6UF-01 3 126268739 126268739 G A C3orf22 Missense_Mutation p.A133V 0.32 tolerated(0.71) possibly_damaging(0.873) TCGA-IB-A6UF-01 3 38938452 38938452 G A SCN11A Missense_Mutation p.R763C 0.29 deleterious(0) probably_damaging(1) TCGA-IB-A6UF-01 4 162841645 162841645 A T FSTL5 Missense_Mutation p.F107Y 0.28 tolerated(0.11) probably_damaging(0.983) TCGA-IB-A6UF-01 5 132098218 132098218 G A SEPT8 Silent p.P218P 0.31 TCGA-IB-A6UF-01 5 133541798 133541798 A G PPP2CA Missense_Mutation p.S43P 0.27 tolerated(0.14) benign(0.003) TCGA-IB-A6UF-01 5 133901907 133901907 C - JADE2 Frame_Shift_Del p.F357Lfs*34 0.28 TCGA-IB-A6UF-01 5 140730509 140730509 C T PCDHGB1 Nonsense_Mutation p.R228* 0.29 TCGA-IB-A6UF-01 5 141335933 141335933 A T PCDH12 Missense_Mutation p.V495D 0.32 deleterious(0) probably_damaging(0.922) TCGA-IB-A6UF-01 5 156593091 156593091 C T FAM71B Missense_Mutation p.R30Q 0.28 tolerated(0.06) benign(0.06) TCGA-IB-A6UF-01 5 179252186 179252186 G C SQSTM1 Missense_Mutation p.K238N 0.25 deleterious(0.01) possibly_damaging(0.873) TCGA-IB-A6UF-01 7 100383688 100383688 G A ZAN Missense_Mutation p.G2301R 0.30 unknown(0) TCGA-IB-A6UF-01 7 137269964 137269964 G A DGKI Silent p.G518G 0.24 TCGA-IB-A6UF-01 8 51664572 51664572 G C SNTG1 Missense_Mutation p.W432C 0.20 deleterious(0) probably_damaging(0.996) TCGA-IB-A6UF-01 8 54163405 54163405 C G OPRK1 Missense_Mutation p.V65L 0.41 tolerated(1) benign(0.039) TCGA-IB-A6UF-01 8 57025772 57025772 G A MOS Missense_Mutation p.T257M 0.21 deleterious(0) probably_damaging(0.995) TCGA-IB-A6UF-01 9 130145778 130145778 T G GARNL3 Silent p.S741S 0.05 TCGA-IB-A6UF-01 9 140671243 140671243 C T EHMT1 Silent p.P655P 0.26 TCGA-IB-A6UF-01 9 37708409 37708409 C T FRMPD1 Silent p.H91H 0.28 TCGA-IB-A6UF-01 X 129206325 129206326 AA - ELF4 Frame_Shift_Del p.F136Sfs*4 0.49 TCGA-IB-A6UF-01 X 73960072 73960072 G A KIAA2022 Silent p.N1440N 0.58 TCGA-IB-A6UG-01 10 100185374 100185374 C T HPS1 Missense_Mutation p.R420H 0.13 deleterious(0) probably_damaging(0.972) TCGA-IB-A6UG-01 10 120905815 120905815 G C SFXN4 Missense_Mutation p.S290C 0.16 tolerated(0.16) probably_damaging(0.928) TCGA-IB-A6UG-01 10 129871718 129871718 G T PTPRE Missense_Mutation p.V528L 0.18 tolerated(1) benign(0.024) TCGA-IB-A6UG-01 10 37508147 37508147 A T ANKRD30A Missense_Mutation p.K1113N 0.17 tolerated(0.56) possibly_damaging(0.788) TCGA-IB-A6UG-01 11 123893818 123893818 C T OR10G9 Silent p.Y33Y 0.22 TCGA-IB-A6UG-01 11 17414520 17414520 C A ABCC8 3'UTR 0.05 TCGA-IB-A6UG-01 11 20968881 20968881 G T NELL1 Splice_Site p.X358_splice 0.09 TCGA-IB-A6UG-01 11 35453854 35453854 C T PAMR1 3'UTR 0.08 TCGA-IB-A6UG-01 11 60786794 60786794 G A CD6 3'UTR 0.15 TCGA-IB-A6UG-01 11 62297984 62297984 G A AHNAK Missense_Mutation p.P1302L 0.19 benign(0.133) TCGA-IB-A6UG-01 11 65810433 65810433 C T GAL3ST3 Missense_Mutation p.A281T 0.22 tolerated(0.27) benign(0.035) TCGA-IB-A6UG-01 11 67202460 67202460 C - RPS6KB2 Frame_Shift_Del p.L425Sfs*69 0.12 TCGA-IB-A6UG-01 11 6789727 6789727 C A OR2AG2 Silent p.L154L 0.06 TCGA-IB-A6UG-01 12 110290281 110290281 G A GLTP 3'UTR 0.09 TCGA-IB-A6UG-01 12 117728173 117728173 C T NOS1 Missense_Mutation p.R304H 0.16 deleterious(0.02) probably_damaging(0.98) TCGA-IB-A6UG-01 12 130184773 130184773 G A TMEM132D Missense_Mutation p.R184W 0.08 deleterious(0) probably_damaging(0.988) TCGA-IB-A6UG-01 12 21733405 21733405 T C GYS2 Silent p.E58E 0.04 TCGA-IB-A6UG-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.10 deleterious(0) benign(0.361) TCGA-IB-A6UG-01 12 50050953 50050953 C T FMNL3 Missense_Mutation p.R209H 0.17 deleterious(0) probably_damaging(0.956) TCGA-IB-A6UG-01 12 57108169 57108169 G A NACA Missense_Mutation p.R781W 0.08 tolerated_low_confidence(0.06) benign(0.329) TCGA-IB-A6UG-01 14 102028612 102028612 G A DIO3 Missense_Mutation p.R260H 0.09 deleterious(0.01) probably_damaging(0.994) TCGA-IB-A6UG-01 14 47120810 47120810 C A RPL10L Missense_Mutation p.D44Y 0.16 deleterious(0) possibly_damaging(0.766) TCGA-IB-A6UG-01 15 31319127 31319127 G A TRPM1 Missense_Mutation p.R1180C 0.09 tolerated(0.15) possibly_damaging(0.762) TCGA-IB-A6UG-01 15 74426584 74426584 G A ISLR2 Missense_Mutation p.E497K 0.32 deleterious(0.01) probably_damaging(0.981) TCGA-IB-A6UG-01 15 89388927 89388927 G A ACAN Missense_Mutation p.E415K 0.10 tolerated(0.11) unknown(0) TCGA-IB-A6UG-01 16 55361532 55361532 C T IRX6 Nonsense_Mutation p.R150* 0.07 TCGA-IB-A6UG-01 16 89251637 89251637 G C CDH15 Missense_Mutation p.A187P 0.18 deleterious(0) probably_damaging(1) TCGA-IB-A6UG-01 17 15903527 15903527 G A TTC19 Missense_Mutation p.A94T 0.14 tolerated(0.1) probably_damaging(0.984) TCGA-IB-A6UG-01 17 21319100 21319100 G A KCNJ12 Missense_Mutation p.R149H 0.05 deleterious(0) probably_damaging(1) TCGA-IB-A6UG-01 17 48649968 48649968 G A CACNA1G Missense_Mutation p.S267N 0.07 tolerated(1) benign(0.001) TCGA-IB-A6UG-01 17 62893421 62893421 G A LRRC37A3 5'UTR 0.04 TCGA-IB-A6UG-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.12 deleterious(0) probably_damaging(1) TCGA-IB-A6UG-01 18 28723623 28723623 A T DSC1 Silent p.T357T 0.09 TCGA-IB-A6UG-01 19 10428271 10428271 T A RAVER1 Silent p.P710P 0.23 TCGA-IB-A6UG-01 19 1119153 1119153 C T SBNO2 Missense_Mutation p.A462T 0.14 deleterious(0) probably_damaging(0.999) TCGA-IB-A6UG-01 19 1207204 1207204 T - STK11 Splice_Site p.X97_splice 0.19 TCGA-IB-A6UG-01 19 4033577 4033577 G A PIAS4 Missense_Mutation p.G381R 0.13 deleterious(0) probably_damaging(0.995) TCGA-IB-A6UG-01 19 50548807 50548807 C T ZNF473 Silent p.H369H 0.03 TCGA-IB-A6UG-01 19 51330167 51330167 C G KLK15 Missense_Mutation p.E150Q 0.21 deleterious(0.03) benign(0.097) TCGA-IB-A6UG-01 19 52132769 52132769 G A SIGLEC5 Missense_Mutation p.T181M 0.25 tolerated(0.15) benign(0.019) TCGA-IB-A6UG-01 19 52817449 52817449 C T ZNF480 Missense_Mutation p.A39V 0.10 deleterious(0) benign(0.12) TCGA-IB-A6UG-01 19 8921944 8921944 T G ZNF558 3'UTR 0.07 TCGA-IB-A6UG-01 1 154543680 154543680 C T CHRNB2 Silent p.Y127Y 0.36 TCGA-IB-A6UG-01 1 175292513 175292513 G A TNR Missense_Mutation p.R1353W 0.08 deleterious(0) probably_damaging(0.983) TCGA-IB-A6UG-01 1 1849752 1849752 G A TMEM52 Missense_Mutation p.P97S 0.09 deleterious(0.04) benign(0.297) TCGA-IB-A6UG-01 1 223465929 223465929 G A SUSD4 Silent p.S71S 0.08 TCGA-IB-A6UG-01 1 22903359 22903359 G A EPHA8 Missense_Mutation p.R270Q 0.05 tolerated(0.35) benign(0.011) TCGA-IB-A6UG-01 1 248028136 248028136 C T TRIM58 Missense_Mutation p.R216W 0.12 deleterious(0) probably_damaging(0.952) TCGA-IB-A6UG-01 1 68947194 68947194 G A DEPDC1 Missense_Mutation p.R622C 0.07 deleterious(0.02) benign(0.165) TCGA-IB-A6UG-01 20 19970910 19970910 C A RIN2 Missense_Mutation p.L724M 0.11 deleterious(0) probably_damaging(1) TCGA-IB-A6UG-01 20 20349690 20349690 C T INSM1 Missense_Mutation p.A260V 0.15 deleterious(0.04) benign(0.07) TCGA-IB-A6UG-01 21 41648061 41648061 G A DSCAM Silent p.G773G 0.17 TCGA-IB-A6UG-01 21 47423408 47423408 C T COL6A1 Silent p.A856A 0.16 TCGA-IB-A6UG-01 22 23438122 23438122 G A GNAZ Silent p.S80S 0.05 TCGA-IB-A6UG-01 2 112785977 112785977 A G MERTK Missense_Mutation p.T846A 0.08 tolerated(0.07) benign(0.018) TCGA-IB-A6UG-01 2 166245632 166245632 C T SCN2A Silent p.I1772I 0.20 TCGA-IB-A6UG-01 2 197135945 197135945 G A HECW2 Missense_Mutation p.P1103S 0.09 tolerated(0.08) benign(0.338) TCGA-IB-A6UG-01 2 208461780 208461780 T G CREB1 Nonstop_Mutation p.*342Eext*4 0.20 TCGA-IB-A6UG-01 2 219870881 219870881 G T CCDC108 Missense_Mutation p.P1595Q 0.10 tolerated(0.4) benign(0.022) TCGA-IB-A6UG-01 2 220414551 220414551 G T TMEM198 Missense_Mutation p.C353F 0.08 tolerated(0.24) benign(0.005) TCGA-IB-A6UG-01 2 228996774 228996774 G A SPHKAP Silent p.D20D 0.13 TCGA-IB-A6UG-01 2 241679772 241679772 C T KIF1A Silent p.P1253P 0.25 TCGA-IB-A6UG-01 2 25384428 25384428 G A POMC Missense_Mutation p.A109V 0.13 tolerated(0.33) benign(0.003) TCGA-IB-A6UG-01 3 113755633 113755633 T A KIAA1407 Missense_Mutation p.D139V 0.18 deleterious(0) probably_damaging(0.988) TCGA-IB-A6UG-01 3 170244788 170244788 A T SLC7A14 5'UTR 0.23 TCGA-IB-A6UG-01 3 73433515 73433515 G A PDZRN3 Silent p.D734D 0.19 TCGA-IB-A6UG-01 3 73434878 73434878 T C PDZRN3 Missense_Mutation p.D526G 0.07 tolerated(0.22) benign(0.022) TCGA-IB-A6UG-01 4 119686069 119686069 G - SEC24D Frame_Shift_Del p.P395Hfs*25 0.09 TCGA-IB-A6UG-01 4 122846207 122846207 C T TRPC3 Missense_Mutation p.R381H 0.16 deleterious(0) possibly_damaging(0.87) TCGA-IB-A6UG-01 4 183594344 183594344 G A TENM3 Missense_Mutation p.R433Q 0.13 deleterious(0) benign(0.238) TCGA-IB-A6UG-01 5 1246093 1246093 G A SLC6A18 Missense_Mutation p.R596Q 0.06 tolerated(0.56) unknown(0) TCGA-IB-A6UG-01 5 132088709 132088709 C T CCNI2 3'UTR 0.15 TCGA-IB-A6UG-01 5 140236911 140236911 G A PCDHA10 Silent p.A426A 0.23 TCGA-IB-A6UG-01 5 153174277 153174277 C T GRIA1 Silent p.S799S 0.18 TCGA-IB-A6UG-01 5 154393886 154393886 G A KIF4B Missense_Mutation p.R156H 0.20 tolerated(0.1) benign(0.009) TCGA-IB-A6UG-01 5 15928366 15928366 C T FBXL7 Silent p.N165N 0.05 TCGA-IB-A6UG-01 5 180051060 180051060 G A FLT4 Missense_Mutation p.R475W 0.13 deleterious(0.02) possibly_damaging(0.893) TCGA-IB-A6UG-01 5 33576636 33576636 C A ADAMTS12 Missense_Mutation p.Q1165H 0.16 tolerated(0.12) benign(0.235) TCGA-IB-A6UG-01 6 27419354 27419354 G A ZNF184 Nonsense_Mutation p.R662* 0.10 TCGA-IB-A6UG-01 6 39513398 39513398 C T KIF6 Silent p.A416A 0.13 TCGA-IB-A6UG-01 7 149500902 149500902 G T SSPO Splice_Site 0.19 TCGA-IB-A6UG-01 8 139737642 139737642 C T COL22A1 Silent p.P727P 0.24 TCGA-IB-A6UG-01 8 26627895 26627895 G A ADRA1A Missense_Mutation p.T391M 0.11 deleterious_low_confidence(0) possibly_damaging(0.66) TCGA-IB-A6UG-01 8 28385210 28385210 G T FZD3 Missense_Mutation p.W311C 0.12 deleterious(0) probably_damaging(0.999) TCGA-IB-A6UG-01 8 54793583 54793583 C T RGS20 Intron 0.15 TCGA-IB-A6UG-01 8 54934836 54934837 - GCG TCEA1 5'UTR 0.32 TCGA-IB-A6UG-01 8 55049226 55049226 G A MRPL15 Splice_Site p.X88_splice 0.16 TCGA-IB-A6UG-01 9 117029789 117029789 G A COL27A1 Silent p.P1151P 0.09 TCGA-IB-A6UG-01 9 118164501 118164501 G A DEC1 3'UTR 0.16 TCGA-IB-A6UG-01 9 123927306 123927306 G A CNTRL Missense_Mutation p.E1837K 0.08 benign(0.371) TCGA-IB-A6UG-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.32 TCGA-IB-A6UG-01 9 5765691 5765691 C T KIAA1432 Silent p.F1010F 0.10 TCGA-IB-A7LX-01 10 25701403 25701403 G T GPR158 Splice_Site p.X445_splice 0.13 TCGA-IB-A7LX-01 11 55322649 55322649 T A OR4C15 Silent p.A289A 0.40 TCGA-IB-A7LX-01 11 55322650 55322650 C A OR4C15 Missense_Mutation p.L290I 0.40 deleterious_low_confidence(0) benign(0.419) TCGA-IB-A7LX-01 11 62370095 62370095 G A EML3 Missense_Mutation p.T848M 0.09 tolerated(0.1) probably_damaging(1) TCGA-IB-A7LX-01 11 6593035 6593035 G A DNHD1 Missense_Mutation p.S4694N 0.23 benign(0.01) TCGA-IB-A7LX-01 11 76257216 76257216 G A C11orf30 Missense_Mutation p.V1217I 0.04 tolerated_low_confidence(0.45) benign(0.162) TCGA-IB-A7LX-01 11 89133524 89133524 A G NOX4 Silent p.P290P 0.05 TCGA-IB-A7LX-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.50 deleterious(0) benign(0.361) TCGA-IB-A7LX-01 14 20841221 20841221 T C TEP1 Silent p.Q2300Q 0.33 TCGA-IB-A7LX-01 14 33291486 33291486 C T AKAP6 Silent p.S1489S 0.31 TCGA-IB-A7LX-01 14 75989073 75989073 T G BATF Silent p.P16P 0.32 TCGA-IB-A7LX-01 15 25490493 25490493 G A SNORD115-40 3'Flank 0.70 TCGA-IB-A7LX-01 15 84683327 84683327 G C ADAMTSL3 Missense_Mutation p.R1336T 0.05 tolerated(0.11) benign(0.012) TCGA-IB-A7LX-01 15 91527307 91527308 - T PRC1 Frame_Shift_Ins p.S70Ifs*17 0.36 TCGA-IB-A7LX-01 17 21730846 21730846 C T UBBP4 Missense_Mutation p.R50W 0.34 deleterious(0) possibly_damaging(0.742) TCGA-IB-A7LX-01 17 32597292 32597292 A T CCL7 5'UTR 0.42 TCGA-IB-A7LX-01 17 38949428 38949428 T A KRT28 Missense_Mutation p.S411C 0.15 tolerated(0.06) benign(0.353) TCGA-IB-A7LX-01 19 20215121 20215121 A C ZNF90 Missense_Mutation p.Q26P 0.03 deleterious(0) benign(0.089) TCGA-IB-A7LX-01 19 22940990 22940990 A C ZNF99 Missense_Mutation p.F574C 0.38 deleterious(0) probably_damaging(0.994) TCGA-IB-A7LX-01 19 40433627 40433627 G A FCGBP Silent p.V214V 0.06 TCGA-IB-A7LX-01 19 4219594 4219594 C T ANKRD24 Missense_Mutation p.R1004C 0.18 deleterious(0) probably_damaging(0.978) TCGA-IB-A7LX-01 19 45682657 45682657 G T BLOC1S3 Nonsense_Mutation p.E35* 0.44 TCGA-IB-A7LX-01 19 45682658 45682658 A C BLOC1S3 Missense_Mutation p.E35A 0.43 tolerated(0.06) possibly_damaging(0.486) TCGA-IB-A7LX-01 19 53303242 53303242 G A ZNF28 Missense_Mutation p.T619I 0.07 tolerated(0.37) benign(0.071) TCGA-IB-A7LX-01 19 53959318 53959318 G A ZNF761 RNA 0.03 TCGA-IB-A7LX-01 19 54705015 54705015 C A RPS9 Intron 0.22 TCGA-IB-A7LX-01 1 11561859 11561859 C T PTCHD2 Silent p.H270H 0.68 TCGA-IB-A7LX-01 1 118609502 118609502 C T SPAG17 Silent p.K802K 0.55 TCGA-IB-A7LX-01 1 156213113 156213113 T G PMF1-BGLAP 3'Flank 0.15 TCGA-IB-A7LX-01 1 241964571 241964571 A G WDR64 3'UTR 0.10 TCGA-IB-A7LX-01 1 243507631 243507631 C A SDCCAG8 Missense_Mutation p.Q491K 0.14 deleterious(0.04) benign(0.275) TCGA-IB-A7LX-01 1 247655339 247655339 A T OR2W5 RNA 0.33 TCGA-IB-A7LX-01 22 37098459 37098459 C T CACNG2 Missense_Mutation p.E55K 0.25 tolerated(0.72) benign(0.367) TCGA-IB-A7LX-01 22 38075643 38075643 G A LGALS1 Missense_Mutation p.V99I 0.24 tolerated(0.95) benign(0.026) TCGA-IB-A7LX-01 2 101010109 101010109 T C CHST10 Silent p.R223R 0.12 TCGA-IB-A7LX-01 2 198265629 198265629 T C SF3B1 Missense_Mutation p.K843R 0.22 deleterious(0.05) benign(0.049) TCGA-IB-A7LX-01 2 198266713 198266713 C T SF3B1 Missense_Mutation p.G740E 0.25 deleterious(0.01) possibly_damaging(0.686) TCGA-IB-A7LX-01 2 33952825 33952825 G C AC009499.1 Intron 0.11 TCGA-IB-A7LX-01 2 74654657 74654657 G A RTKN Silent p.I383I 0.21 TCGA-IB-A7LX-01 2 84784998 84784998 C T DNAH6 Missense_Mutation p.P581L 0.40 deleterious(0) benign(0.414) TCGA-IB-A7LX-01 3 131283152 131283152 G C CPNE4 Missense_Mutation p.N323K 0.18 tolerated(0.08) probably_damaging(0.986) TCGA-IB-A7LX-01 3 150391782 150391782 T G FAM194A Missense_Mutation p.K435T 0.12 deleterious(0) probably_damaging(0.979) TCGA-IB-A7LX-01 4 126411862 126411862 G A FAT4 Missense_Mutation p.A4629T 0.07 probably_damaging(0.993) TCGA-IB-A7LX-01 4 38134830 38134830 C T TBC1D1 Silent p.T1086T 0.06 TCGA-IB-A7LX-01 4 68725370 68725370 C T TMPRSS11D Missense_Mutation p.R12K 0.25 tolerated(0.12) benign(0.129) TCGA-IB-A7LX-01 5 137219194 137219194 T A MYOT Missense_Mutation p.V313D 0.15 deleterious(0) probably_damaging(0.994) TCGA-IB-A7LX-01 5 70751780 70751798 AATCCCCAGCGTGGACGGG - BDP1 Frame_Shift_Del p.N26Sfs*120 0.18 TCGA-IB-A7LX-01 6 137113237 137113237 C G MAP3K5 Missense_Mutation p.G20A 0.52 tolerated_low_confidence(0.4) benign(0.01) TCGA-IB-A7LX-01 7 107743496 107743496 C T LAMB4 Silent p.A391A 0.22 TCGA-IB-A7LX-01 7 12692526 12692526 G A SCIN 3'UTR 0.36 TCGA-IB-A7LX-01 7 64530071 64530072 - T SNORA22 3'Flank 0.32 TCGA-IB-A7LX-01 7 95665004 95665004 T A DYNC1I1 Missense_Mutation p.V452D 0.08 deleterious(0) probably_damaging(0.998) TCGA-IB-A7LX-01 8 68981315 68981315 C T PREX2 Missense_Mutation p.R463C 0.37 deleterious(0) probably_damaging(0.995) TCGA-IB-A7LX-01 8 75227735 75227735 C T JPH1 Missense_Mutation p.R167H 0.08 deleterious(0.02) probably_damaging(0.997) TCGA-IB-A7M4-01 10 76979095 76979095 A G VDAC2 Missense_Mutation p.T128A 0.21 tolerated(0.1) benign(0.097) TCGA-IB-A7M4-01 11 1096405 1096405 G A MUC2 Missense_Mutation p.V2144M 0.22 unknown(0) TCGA-IB-A7M4-01 11 12247727 12247727 C G MICAL2 Missense_Mutation p.D566E 0.03 tolerated(0.06) benign(0.015) TCGA-IB-A7M4-01 11 133807360 133807360 G A IGSF9B Missense_Mutation p.S197L 0.25 deleterious(0.01) possibly_damaging(0.489) TCGA-IB-A7M4-01 11 58126293 58126293 G T OR5B17 Missense_Mutation p.L84I 0.22 deleterious_low_confidence(0.03) benign(0.398) TCGA-IB-A7M4-01 11 65271986 65271986 T A MALAT1 RNA 0.22 TCGA-IB-A7M4-01 12 108091262 108091262 G A PWP1 Missense_Mutation p.G211E 0.05 deleterious(0) possibly_damaging(0.89) TCGA-IB-A7M4-01 12 12037406 12037406 A G ETV6 Missense_Mutation p.Y346C 0.18 deleterious(0) probably_damaging(1) TCGA-IB-A7M4-01 12 123482085 123482085 G T PITPNM2 Missense_Mutation p.S420Y 0.24 deleterious(0.01) possibly_damaging(0.701) TCGA-IB-A7M4-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.21 deleterious(0) benign(0.361) TCGA-IB-A7M4-01 12 55688832 55688832 C T OR6C6 Missense_Mutation p.R62H 0.26 deleterious_low_confidence(0.02) benign(0.046) TCGA-IB-A7M4-01 12 88568385 88568385 G A TMTC3 Missense_Mutation p.V401I 0.27 tolerated(0.45) benign(0.002) TCGA-IB-A7M4-01 13 110436560 110436560 G A IRS2 Missense_Mutation p.P614L 0.08 tolerated(0.34) benign(0.04) TCGA-IB-A7M4-01 13 27259854 27259854 C T WASF3 Missense_Mutation p.R461W 0.17 tolerated(0.24) probably_damaging(0.93) TCGA-IB-A7M4-01 13 29600278 29600278 G A MTUS2 Silent p.T491T 0.18 TCGA-IB-A7M4-01 14 64854981 64854981 C T MTHFD1 5'Flank 0.10 TCGA-IB-A7M4-01 15 75977834 75977834 G A CSPG4 Missense_Mutation p.S1333L 0.42 deleterious(0.04) benign(0.075) TCGA-IB-A7M4-01 16 11017082 11017082 C T CIITA Intron 0.17 TCGA-IB-A7M4-01 16 2161454 2161454 G A PKD1 Silent p.G1238G 0.28 TCGA-IB-A7M4-01 16 68900986 68900986 G T TANGO6 Missense_Mutation p.C286F 0.19 tolerated(0.56) benign(0.027) TCGA-IB-A7M4-01 16 85667700 85667700 C T GSE1 Missense_Mutation p.A63V 0.07 deleterious(0) unknown(0) TCGA-IB-A7M4-01 17 18220237 18220237 C T SMCR8 Silent p.V378V 0.25 TCGA-IB-A7M4-01 17 57725004 57725004 C A CLTC Missense_Mutation p.L166I 0.20 tolerated(0.08) possibly_damaging(0.578) TCGA-IB-A7M4-01 17 62788593 62788593 A T PLEKHM1P RNA 0.21 TCGA-IB-A7M4-01 17 7577532 7577532 G A TP53 Missense_Mutation p.P250L 0.31 deleterious(0) probably_damaging(1) TCGA-IB-A7M4-01 17 8049954 8049955 - T PER1 Frame_Shift_Ins p.S622Kfs*27 0.16 TCGA-IB-A7M4-01 18 22806481 22806481 C T ZNF521 Silent p.L467L 0.05 TCGA-IB-A7M4-01 19 15655075 15655075 T C CYP4F22 Missense_Mutation p.L374P 0.04 tolerated(1) benign(0.016) TCGA-IB-A7M4-01 19 32971419 32971419 C T DPY19L3 Missense_Mutation p.R649W 0.05 deleterious(0) probably_damaging(0.953) TCGA-IB-A7M4-01 19 37903725 37903725 C T ZNF569 Missense_Mutation p.G612E 0.24 deleterious(0.03) probably_damaging(1) TCGA-IB-A7M4-01 19 58016113 58016113 G T ZNF773 Missense_Mutation p.R41L 0.20 tolerated(0.34) benign(0.373) TCGA-IB-A7M4-01 1 100382219 100382219 G A AGL Silent p.P1471P 0.05 TCGA-IB-A7M4-01 1 147955312 147955312 G A PPIAL4A Silent p.T11T 0.14 TCGA-IB-A7M4-01 1 151009164 151009164 C T BNIPL 5'UTR 0.04 TCGA-IB-A7M4-01 1 152882593 152882593 A G IVL Missense_Mutation p.Q107R 0.17 deleterious_low_confidence(0.01) unknown(0) TCGA-IB-A7M4-01 1 157666889 157666889 C T FCRL3 Intron 0.20 TCGA-IB-A7M4-01 1 177250548 177250548 C T BRINP2 Missense_Mutation p.R746W 0.24 deleterious(0) probably_damaging(0.998) TCGA-IB-A7M4-01 1 208390894 208390894 C T PLXNA2 Missense_Mutation p.R125H 0.23 deleterious(0) probably_damaging(0.999) TCGA-IB-A7M4-01 1 245772663 245772663 C T KIF26B Missense_Mutation p.R583C 0.17 deleterious(0.01) unknown(0) TCGA-IB-A7M4-01 1 3511972 3511972 C T MEGF6 Silent p.T102T 0.07 TCGA-IB-A7M4-01 1 47748097 47748097 T C STIL Missense_Mutation p.I390V 0.20 tolerated(1) benign(0.003) TCGA-IB-A7M4-01 1 70819981 70819981 G - ANKRD13C Frame_Shift_Del p.F38Lfs*26 0.19 TCGA-IB-A7M4-01 20 26188829 26188829 G A MIR663A Intron 0.40 TCGA-IB-A7M4-01 20 30125989 30125989 C G HM13 Missense_Mutation p.S97C 0.14 deleterious(0) probably_damaging(0.973) TCGA-IB-A7M4-01 20 40709496 40709496 G A PTPRT 3'UTR 0.17 TCGA-IB-A7M4-01 20 6759506 6759506 C G BMP2 Missense_Mutation p.H321D 0.08 tolerated(0.45) probably_damaging(0.973) TCGA-IB-A7M4-01 21 28315795 28315795 G A ADAMTS5 Missense_Mutation p.R437C 0.04 deleterious(0) probably_damaging(0.995) TCGA-IB-A7M4-01 2 125671709 125671709 C T CNTNAP5 Silent p.I1255I 0.05 TCGA-IB-A7M4-01 2 128335762 128335762 C T MYO7B Missense_Mutation p.R302C 0.16 tolerated(0.08) benign(0.098) TCGA-IB-A7M4-01 2 167141148 167141148 G A SCN9A Nonsense_Mutation p.R597* 0.07 TCGA-IB-A7M4-01 2 173356152 173356152 G A ITGA6 Splice_Site p.X964_splice 0.04 TCGA-IB-A7M4-01 2 175436585 175436585 G A WIPF1 Silent p.P316P 0.18 TCGA-IB-A7M4-01 2 96933201 96933201 C G CIAO1 Missense_Mutation p.D94E 0.25 tolerated(1) benign(0.002) TCGA-IB-A7M4-01 3 132407536 132407536 C T NPHP3 Missense_Mutation p.R1028H 0.08 deleterious(0.01) probably_damaging(0.932) TCGA-IB-A7M4-01 3 190147270 190147270 A T TMEM207 3'UTR 0.43 TCGA-IB-A7M4-01 3 23960714 23960715 - T RPL15 Frame_Shift_Ins p.R114Efs*10 0.28 TCGA-IB-A7M4-01 3 40503613 40503613 G A RPL14 Missense_Mutation p.A180T 0.23 tolerated(0.15) unknown(0) TCGA-IB-A7M4-01 4 134084224 134084224 C G PCDH10 Missense_Mutation p.R964G 0.02 tolerated(0.13) probably_damaging(0.994) TCGA-IB-A7M4-01 4 151199141 151199141 G A LRBA Nonsense_Mutation p.R2789* 0.05 TCGA-IB-A7M4-01 4 183714508 183714508 G A TENM3 Missense_Mutation p.R2228H 0.07 tolerated(0.21) benign(0) TCGA-IB-A7M4-01 5 115782948 115782948 C T SEMA6A Silent p.L818L 0.07 TCGA-IB-A7M4-01 5 118506551 118506551 A C DMXL1 Missense_Mutation p.D2022A 0.18 deleterious(0) probably_damaging(1) TCGA-IB-A7M4-01 5 121188177 121188177 G A FTMT Silent p.S173S 0.06 TCGA-IB-A7M4-01 5 121409724 121409724 C T LOX Missense_Mutation p.C340Y 0.06 deleterious(0) probably_damaging(1) TCGA-IB-A7M4-01 5 140720214 140720214 C T PCDHGA2 Missense_Mutation p.A559V 0.05 tolerated_low_confidence(0.31) benign(0.01) TCGA-IB-A7M4-01 5 80376464 80376464 T G RASGRF2 Missense_Mutation p.F339L 0.06 deleterious(0) probably_damaging(0.999) TCGA-IB-A7M4-01 5 80640798 80640798 C T ACOT12 Missense_Mutation p.R279H 0.19 deleterious(0) probably_damaging(0.987) TCGA-IB-A7M4-01 6 13273094 13273094 G A TBC1D7 Intron 0.04 TCGA-IB-A7M4-01 6 36710085 36710085 G A CPNE5 Missense_Mutation p.A581V 0.14 tolerated(0.15) benign(0) TCGA-IB-A7M4-01 6 47847617 47847617 C G PTCHD4 Missense_Mutation p.E321D 0.10 tolerated(0.15) probably_damaging(0.982) TCGA-IB-A7M4-01 6 56325048 56325048 G A DST Missense_Mutation p.T5045M 0.25 probably_damaging(0.988) TCGA-IB-A7M4-01 6 73904417 73904417 G A KCNQ5 Silent p.T712T 0.22 TCGA-IB-A7M4-01 7 148484186 148484186 G A CUL1 Missense_Mutation p.E485K 0.06 deleterious(0) probably_damaging(0.991) TCGA-IB-A7M4-01 7 37311484 37311484 G A ELMO1 Missense_Mutation p.R66C 0.05 deleterious(0) probably_damaging(0.999) TCGA-IB-A7M4-01 8 113349048 113349048 A T CSMD3 Silent p.G2284G 0.34 TCGA-IB-A7M4-01 8 144891159 144891159 C T SCRIB Missense_Mutation p.G579R 0.06 benign(0.002) TCGA-IB-A7M4-01 8 144991972 144991972 G A PLEC Missense_Mutation p.S4143L 0.03 probably_damaging(0.993) TCGA-IB-A7M4-01 8 39626980 39626980 G C ADAM2 Missense_Mutation p.F381L 0.03 deleterious(0.04) benign(0) TCGA-IB-A7M4-01 9 21974759 21974759 C - CDKN2A Frame_Shift_Del p.G23Vfs*3 0.31 TCGA-IB-A7M4-01 9 96847575 96847575 A G PTPDC1 Missense_Mutation p.E94G 0.22 deleterious(0) probably_damaging(0.996) TCGA-IB-A7M4-01 X 17745920 17745920 G C NHS Missense_Mutation p.E1211Q 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.883) TCGA-IB-A7M4-01 X 92964973 92964973 T C FAM133A Silent p.P185P 0.10 TCGA-IB-AAUM-01 10 103868035 103868035 C T LDB1 Missense_Mutation p.G351R 0.04 deleterious(0) possibly_damaging(0.749) TCGA-IB-AAUM-01 11 120769305 120769305 C T GRIK4 Missense_Mutation p.S410L 0.05 deleterious(0) benign(0.116) TCGA-IB-AAUM-01 11 125871630 125871630 G C CDON Silent p.S714S 0.05 TCGA-IB-AAUM-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.06 deleterious(0) benign(0.361) TCGA-IB-AAUM-01 12 69082833 69082833 C T NUP107 Missense_Mutation p.L34F 0.05 tolerated_low_confidence(0.66) benign(0.031) TCGA-IB-AAUM-01 15 86311613 86311613 C T KLHL25 Missense_Mutation p.E477K 0.04 tolerated(0.4) benign(0.291) TCGA-IB-AAUM-01 16 47195677 47195677 G A ITFG1 Missense_Mutation p.H549Y 0.05 tolerated(0.66) benign(0.057) TCGA-IB-AAUM-01 17 27898646 27898646 A T TP53I13 Missense_Mutation p.H74L 0.03 deleterious(0) probably_damaging(0.999) TCGA-IB-AAUM-01 18 48604703 48604703 T G SMAD4 Missense_Mutation p.W509G 0.07 deleterious(0.01) probably_damaging(1) TCGA-IB-AAUM-01 19 10671101 10671101 G A KRI1 Silent p.N235N 0.08 TCGA-IB-AAUM-01 19 38160168 38160168 C A ZNF781 Missense_Mutation p.L294F 0.05 tolerated(0.26) possibly_damaging(0.587) TCGA-IB-AAUM-01 19 49248495 49248495 G A IZUMO1 Missense_Mutation p.R96C 0.04 deleterious(0) probably_damaging(0.991) TCGA-IB-AAUM-01 1 115217379 115217379 T A AMPD1 Missense_Mutation p.L631F 0.03 deleterious(0.02) probably_damaging(0.996) TCGA-IB-AAUM-01 1 152282688 152282688 C T FLG Silent p.G1558G 0.05 TCGA-IB-AAUM-01 1 161166318 161166318 A T ADAMTS4 Intron 0.06 TCGA-IB-AAUM-01 1 184446546 184446546 G A C1orf21 5'UTR 0.06 TCGA-IB-AAUM-01 1 203831342 203831342 T A SNRPE Missense_Mutation p.L25I 0.03 deleterious(0.01) possibly_damaging(0.512) TCGA-IB-AAUM-01 1 82421570 82421570 G A LPHN2 Missense_Mutation p.D598N 0.06 deleterious(0.03) possibly_damaging(0.836) TCGA-IB-AAUM-01 21 27066110 27066110 G T JAM2 Missense_Mutation p.R95L 0.04 deleterious(0.02) probably_damaging(0.985) TCGA-IB-AAUM-01 22 35660888 35660888 G A HMGXB4 Silent p.S169S 0.04 TCGA-IB-AAUM-01 2 98349783 98349783 G A ZAP70 Missense_Mutation p.A272T 0.08 tolerated(0.25) benign(0.004) TCGA-IB-AAUM-01 3 39227663 39227663 C T XIRP1 Missense_Mutation p.G1092S 0.04 tolerated(0.41) benign(0.349) TCGA-IB-AAUM-01 6 36930968 36930968 G A PI16 Missense_Mutation p.V284I 0.07 tolerated(0.09) benign(0.016) TCGA-IB-AAUM-01 6 5004223 5004223 C G RPP40 Missense_Mutation p.R5P 0.07 deleterious(0.01) possibly_damaging(0.583) TCGA-IB-AAUM-01 8 53555118 53555118 C T RB1CC1 Missense_Mutation p.R1377H 0.04 deleterious(0.05) probably_damaging(0.992) TCGA-IB-AAUM-01 8 73480147 73480147 C T KCNB2 Missense_Mutation p.R60C 0.06 deleterious(0) probably_damaging(1) TCGA-IB-AAUN-01 10 115970681 115970681 G T TDRD1 Missense_Mutation p.D539Y 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-IB-AAUN-01 10 71005968 71005968 C T HKDC1 Missense_Mutation p.R337W 0.27 deleterious(0) possibly_damaging(0.842) TCGA-IB-AAUN-01 10 98762035 98762035 C T SLIT1 Missense_Mutation p.G1416R 0.24 tolerated(0.27) benign(0.414) TCGA-IB-AAUN-01 11 123894024 123894024 T C OR10G9 Missense_Mutation p.F102S 0.14 tolerated(0.26) benign(0.002) TCGA-IB-AAUN-01 11 123909404 123909404 A G OR10G7 Missense_Mutation p.F102S 0.10 tolerated(0.25) benign(0.002) TCGA-IB-AAUN-01 11 64789360 64789360 G A ARL2 3'UTR 0.27 TCGA-IB-AAUN-01 11 65418107 65418107 A C SIPA1 Missense_Mutation p.Q1017P 0.16 deleterious(0) benign(0.305) TCGA-IB-AAUN-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.25 deleterious(0) benign(0.361) TCGA-IB-AAUN-01 13 37012789 37012789 C T CCNA1 Silent p.H226H 0.28 TCGA-IB-AAUN-01 14 105180688 105180689 - T INF2 Frame_Shift_Ins p.L1064Ffs*26 0.17 TCGA-IB-AAUN-01 14 58915077 58915077 C T KIAA0586 Missense_Mutation p.A329V 0.39 deleterious(0.04) probably_damaging(0.999) TCGA-IB-AAUN-01 16 88061097 88061097 T C BANP Missense_Mutation p.F294L 0.30 deleterious_low_confidence(0.05) probably_damaging(0.996) TCGA-IB-AAUN-01 17 1201577 1201577 G A TUSC5 3'UTR 0.34 TCGA-IB-AAUN-01 17 42828492 42828492 G A DBF4B Silent p.P573P 0.19 TCGA-IB-AAUN-01 17 56437602 56437603 - C RNF43 Frame_Shift_Ins p.V287Gfs*7 0.27 TCGA-IB-AAUN-01 17 7574018 7574018 G A TP53 Missense_Mutation p.R337C 0.46 tolerated(0.09) benign(0.344) TCGA-IB-AAUN-01 18 47797907 47797914 GGACCTAG - MBD1 Intron 0.38 TCGA-IB-AAUN-01 18 48586256 48586262 GCATTCC - SMAD4 Frame_Shift_Del p.A309Sfs*25 0.30 TCGA-IB-AAUN-01 18 52899813 52899813 T C TCF4 Missense_Mutation p.T628A 0.43 tolerated(0.34) benign(0) TCGA-IB-AAUN-01 19 51298323 51298323 G A ACPT Missense_Mutation p.G397R 0.21 tolerated(0.13) probably_damaging(0.999) TCGA-IB-AAUN-01 19 57328906 57328906 G A PEG3 Missense_Mutation p.R302W 0.25 deleterious(0) probably_damaging(0.991) TCGA-IB-AAUN-01 19 58596116 58596116 G A ZSCAN18 Missense_Mutation p.A546V 0.39 tolerated_low_confidence(0.75) unknown(0) TCGA-IB-AAUN-01 1 212209261 212209261 C G DTL Missense_Mutation p.P10R 0.28 tolerated(0.8) benign(0.374) TCGA-IB-AAUN-01 1 212209262 212209262 C G DTL Silent p.P10P 0.27 TCGA-IB-AAUN-01 1 241797637 241797637 T C CHML Missense_Mutation p.I478V 0.07 tolerated(0.13) benign(0.002) TCGA-IB-AAUN-01 1 70488845 70488845 C T LRRC7 Missense_Mutation p.R490C 0.42 tolerated(0.06) benign(0.353) TCGA-IB-AAUN-01 20 56234669 56234669 T C PMEPA1 Missense_Mutation p.Y65C 0.30 deleterious(0) probably_damaging(0.999) TCGA-IB-AAUN-01 22 37326748 37326748 G A CSF2RB Silent p.G296G 0.25 TCGA-IB-AAUN-01 2 234746103 234746103 A T HJURP 3'UTR 0.09 TCGA-IB-AAUN-01 2 97849220 97849220 G A ANKRD36 Nonsense_Mutation p.W621* 0.23 TCGA-IB-AAUN-01 4 115597336 115597336 G A UGT8 Silent p.L506L 0.17 TCGA-IB-AAUN-01 5 1064314 1064314 C T SLC12A7 Missense_Mutation p.V831I 0.29 tolerated(1) benign(0.002) TCGA-IB-AAUN-01 5 140167552 140167552 C T PCDHA1 Silent p.N559N 0.26 TCGA-IB-AAUN-01 5 42800957 42800959 CTC - SEPP1 In_Frame_Del p.E337del 0.34 TCGA-IB-AAUN-01 5 52360796 52360796 C T ITGA2 Nonsense_Mutation p.R553* 0.25 TCGA-IB-AAUN-01 6 36098345 36098345 G A MAPK13 5'UTR 0.20 TCGA-IB-AAUN-01 6 36106684 36106684 G C MAPK13 Missense_Mutation p.E290D 0.31 tolerated(0.28) benign(0.365) TCGA-IB-AAUN-01 7 27148046 27148046 C T HOXA3 Missense_Mutation p.G274S 0.22 tolerated(0.23) probably_damaging(0.937) TCGA-IB-AAUN-01 8 144654809 144654809 C A MROH6 Nonsense_Mutation p.E26* 0.10 TCGA-IB-AAUN-01 9 6990510 6990510 C T KDM4C Missense_Mutation p.A591V 0.37 tolerated(0.26) benign(0.016) TCGA-IB-AAUN-01 X 153717321 153717321 G A SLC10A3 5'UTR 0.32 TCGA-IB-AAUN-01 X 76938955 76938955 G A ATRX Missense_Mutation p.S598F 0.26 possibly_damaging(0.701) TCGA-IB-AAUO-01 10 102057186 102057186 G A PKD2L1 Silent p.I303I 0.11 TCGA-IB-AAUO-01 10 118425205 118425205 G C C10orf82 Missense_Mutation p.A63G 0.17 deleterious(0.02) possibly_damaging(0.763) TCGA-IB-AAUO-01 10 24831899 24831899 G T KIAA1217 Nonsense_Mutation p.E1234* 0.21 TCGA-IB-AAUO-01 10 410376 410376 G A DIP2C Silent p.N805N 0.18 TCGA-IB-AAUO-01 11 103027117 103027117 G T DYNC2H1 Missense_Mutation p.D1249Y 0.17 benign(0.393) TCGA-IB-AAUO-01 11 110451075 110451075 T C ARHGAP20 Silent p.S865S 0.18 TCGA-IB-AAUO-01 11 124967429 124967429 G A TMEM218 3'UTR 0.21 TCGA-IB-AAUO-01 11 126432761 126432761 C T KIRREL3 Missense_Mutation p.M34I 0.13 tolerated_low_confidence(0.13) benign(0.009) TCGA-IB-AAUO-01 11 5289620 5289620 C T HBE1 3'UTR 0.19 TCGA-IB-AAUO-01 11 60704554 60704554 G A TMEM132A 3'UTR 0.10 TCGA-IB-AAUO-01 12 131476784 131476784 G A GPR133 Missense_Mutation p.M271I 0.02 tolerated(0.21) benign(0) TCGA-IB-AAUO-01 12 21644543 21644543 G T RECQL Missense_Mutation p.L42M 0.15 deleterious(0) possibly_damaging(0.86) TCGA-IB-AAUO-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.18 deleterious(0) benign(0.361) TCGA-IB-AAUO-01 12 7469871 7469871 C T ACSM4 Silent p.C253C 0.21 TCGA-IB-AAUO-01 14 81950645 81950645 G A SEL1L Missense_Mutation p.A657V 0.04 deleterious(0) probably_damaging(1) TCGA-IB-AAUO-01 14 93396099 93396099 C A CHGA Missense_Mutation p.S98R 0.08 tolerated(0.12) benign(0.021) TCGA-IB-AAUO-01 15 45433521 45433521 C T DUOX1 Nonsense_Mutation p.R533* 0.04 TCGA-IB-AAUO-01 16 69969883 69969883 G A WWP2 Nonsense_Mutation p.W657* 0.19 TCGA-IB-AAUO-01 16 77317969 77317969 C G ADAMTS18 Splice_Site p.X1184_splice 0.12 TCGA-IB-AAUO-01 17 1564593 1564593 C T PRPF8 Missense_Mutation p.R1437H 0.16 deleterious(0) probably_damaging(0.999) TCGA-IB-AAUO-01 17 19458922 19458922 A G SLC47A1 Missense_Mutation p.N220D 0.26 deleterious(0.02) possibly_damaging(0.682) TCGA-IB-AAUO-01 17 38857493 38857493 G A KRT24 Missense_Mutation p.R252W 0.04 deleterious(0) probably_damaging(0.975) TCGA-IB-AAUO-01 17 40925498 40925498 C A VPS25 Missense_Mutation p.A2E 0.13 tolerated(0.08) benign(0.259) TCGA-IB-AAUO-01 17 41245612 41245612 T C BRCA1 Missense_Mutation p.S646G 0.10 deleterious(0.01) possibly_damaging(0.907) TCGA-IB-AAUO-01 17 42928694 42928694 G T EFTUD2 Missense_Mutation p.P956H 0.14 deleterious(0) probably_damaging(0.988) TCGA-IB-AAUO-01 17 56345237 56345237 C T LPO Missense_Mutation p.T674I 0.19 deleterious(0) probably_damaging(1) TCGA-IB-AAUO-01 17 6023840 6023840 G A WSCD1 Silent p.R529R 0.27 TCGA-IB-AAUO-01 18 61602106 61602106 A C SERPINB10 Missense_Mutation p.E275A 0.17 tolerated(0.31) benign(0.048) TCGA-IB-AAUO-01 19 38990545 38990545 C A RYR1 Intron 0.13 TCGA-IB-AAUO-01 19 41257267 41257267 A G SNRPA 5'UTR 0.19 TCGA-IB-AAUO-01 19 43237204 43237204 G T PSG3 Silent p.P147P 0.17 TCGA-IB-AAUO-01 19 56953041 56953041 T C ZNF667 Silent p.K441K 0.03 TCGA-IB-AAUO-01 19 8953738 8953738 G A MBD3L1 Silent p.A128A 0.15 TCGA-IB-AAUO-01 1 150530955 150530955 G A ADAMTSL4 Missense_Mutation p.V797M 0.24 deleterious(0) probably_damaging(0.992) TCGA-IB-AAUO-01 1 179604922 179604922 G T TDRD5 Missense_Mutation p.G474W 0.12 deleterious(0) probably_damaging(0.999) TCGA-IB-AAUO-01 1 208276511 208276511 A G PLXNA2 Missense_Mutation p.W530R 0.19 deleterious(0) probably_damaging(0.914) TCGA-IB-AAUO-01 1 247024493 247024494 - A AHCTF1 Frame_Shift_Ins p.L1290Pfs*5 0.11 TCGA-IB-AAUO-01 22 23503831 23503831 C T RAB36 3'UTR 0.29 TCGA-IB-AAUO-01 2 207171284 207171284 G T ZDBF2 Missense_Mutation p.D678Y 0.15 deleterious(0.01) probably_damaging(0.969) TCGA-IB-AAUO-01 2 44586652 44586652 C T PREPL Missense_Mutation p.R68Q 0.16 deleterious(0.02) possibly_damaging(0.772) TCGA-IB-AAUO-01 2 65301545 65301545 T C CEP68 Intron 0.22 TCGA-IB-AAUO-01 2 71742844 71742844 C T DYSF Missense_Mutation p.T284M 0.04 deleterious(0) probably_damaging(0.999) TCGA-IB-AAUO-01 3 101575980 101575980 C - NFKBIZ Frame_Shift_Del p.R630Afs*13 0.12 TCGA-IB-AAUO-01 3 111603672 111603672 G A PHLDB2 Missense_Mutation p.G250R 0.36 deleterious(0) benign(0.175) TCGA-IB-AAUO-01 3 39118643 39118643 G A WDR48 Missense_Mutation p.R304K 0.16 tolerated(0.79) benign(0) TCGA-IB-AAUO-01 4 94376915 94376915 C T GRID2 Nonsense_Mutation p.R550* 0.03 TCGA-IB-AAUO-01 4 94547520 94547520 T G GRID2 Missense_Mutation p.V765G 0.04 deleterious(0) benign(0.209) TCGA-IB-AAUO-01 5 155771593 155771593 G A SGCD Missense_Mutation p.R33Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-IB-AAUO-01 5 17354204 17354205 - T CTD-2139B15.2 Intron 0.13 TCGA-IB-AAUO-01 5 33596156 33596156 C T ADAMTS12 Missense_Mutation p.R846H 0.14 tolerated(0.1) benign(0.127) TCGA-IB-AAUO-01 6 99831606 99831606 G A COQ3 Silent p.I67I 0.03 TCGA-IB-AAUO-01 7 105673026 105673026 G A CDHR3 Silent p.A847A 0.05 TCGA-IB-AAUO-01 7 128480725 128480725 G A FLNC Missense_Mutation p.R558H 0.11 deleterious(0.03) probably_damaging(0.987) TCGA-IB-AAUO-01 7 140710243 140710243 G A MRPS33 Missense_Mutation p.T64M 0.17 tolerated(0.18) benign(0.075) TCGA-IB-AAUO-01 7 97834868 97834868 C T LMTK2 3'UTR 0.20 TCGA-IB-AAUO-01 8 143618425 143618425 C T BAI1 Silent p.N1216N 0.07 TCGA-IB-AAUO-01 9 125873842 125873842 G A MIR600HG RNA 0.25 TCGA-IB-AAUO-01 9 137709638 137709638 C T COL5A1 Silent p.P1397P 0.17 TCGA-IB-AAUO-01 9 139289824 139289824 C T SNAPC4 Missense_Mutation p.G133S 0.03 tolerated(0.17) benign(0.068) TCGA-IB-AAUO-01 9 139633969 139633969 G A LCN10 3'UTR 0.24 TCGA-IB-AAUO-01 9 34622033 34622033 G A ARID3C Silent p.N374N 0.12 TCGA-IB-AAUO-01 9 77390934 77390934 G A TRPM6 Missense_Mutation p.R1090C 0.03 deleterious(0) possibly_damaging(0.841) TCGA-IB-AAUO-01 X 71427535 71427536 - G ERCC6L Frame_Shift_Ins p.L361Pfs*6 0.19 TCGA-IB-AAUP-01 10 122334762 122334762 G A PPAPDC1A Missense_Mutation p.A189T 0.04 deleterious(0) probably_damaging(0.999) TCGA-IB-AAUP-01 10 37431076 37431076 C T ANKRD30A Silent p.I361I 0.04 TCGA-IB-AAUP-01 11 117651364 117651364 C T DSCAML1 Missense_Mutation p.V130M 0.03 deleterious(0) probably_damaging(1) TCGA-IB-AAUP-01 12 41419082 41419082 A G CNTN1 Missense_Mutation p.N885S 0.06 deleterious(0) probably_damaging(0.999) TCGA-IB-AAUP-01 13 113772782 113772782 G A F7 Silent p.Q287Q 0.09 TCGA-IB-AAUP-01 13 39262608 39262608 G A FREM2 Missense_Mutation p.R376H 0.05 deleterious(0.05) benign(0.14) TCGA-IB-AAUP-01 13 42876975 42876975 G C AKAP11 Missense_Mutation p.D1365H 0.03 deleterious(0) probably_damaging(0.991) TCGA-IB-AAUP-01 14 102749891 102749891 A T MOK Missense_Mutation p.S16T 0.05 deleterious(0) probably_damaging(1) TCGA-IB-AAUP-01 15 28391388 28391388 C T HERC2 Missense_Mutation p.R3668Q 0.04 probably_damaging(0.98) TCGA-IB-AAUP-01 15 33858937 33858937 G A RYR3 Missense_Mutation p.R402H 0.03 benign(0) TCGA-IB-AAUP-01 16 4733904 4733904 G A MGRN1 Missense_Mutation p.R530Q 0.09 tolerated_low_confidence(0.51) benign(0.06) TCGA-IB-AAUP-01 16 49315201 49315201 C A CBLN1 Missense_Mutation p.S59I 0.07 deleterious(0) possibly_damaging(0.477) TCGA-IB-AAUP-01 16 55690874 55690874 G A SLC6A2 Missense_Mutation p.G90S 0.04 deleterious(0) probably_damaging(1) TCGA-IB-AAUP-01 16 68055453 68055453 A G DDX28 3'UTR 0.06 TCGA-IB-AAUP-01 16 71423849 71423849 G A CALB2 3'UTR 0.06 TCGA-IB-AAUP-01 17 42937897 42937897 A G EFTUD2 Missense_Mutation p.V541A 0.09 tolerated(0.13) benign(0.344) TCGA-IB-AAUP-01 17 65688807 65688807 G A PITPNC1 Missense_Mutation p.V268I 0.03 tolerated(0.28) benign(0.001) TCGA-IB-AAUP-01 17 78351573 78351573 G A RNF213 Missense_Mutation p.G4508S 0.07 probably_damaging(1) TCGA-IB-AAUP-01 19 19330065 19330065 C T NCAN Missense_Mutation p.R139C 0.06 deleterious(0) probably_damaging(0.999) TCGA-IB-AAUP-01 19 4499495 4499495 G A HDGFRP2 Missense_Mutation p.R528H 0.04 deleterious(0) possibly_damaging(0.715) TCGA-IB-AAUP-01 19 9056276 9056276 C T MUC16 Silent p.R10390R 0.04 TCGA-IB-AAUP-01 1 152659492 152659492 C T LCE2B Missense_Mutation p.P58L 0.03 tolerated_low_confidence(0.13) unknown(0) TCGA-IB-AAUP-01 1 167024256 167024256 G A GPA33 Nonsense_Mutation p.R262* 0.04 TCGA-IB-AAUP-01 1 28261707 28261707 G C SMPDL3B Missense_Mutation p.A5P 0.04 tolerated(0.27) benign(0.002) TCGA-IB-AAUP-01 1 53972275 53972275 C T GLIS1 3'UTR 0.05 TCGA-IB-AAUP-01 20 16360516 16360516 G A KIF16B Nonsense_Mutation p.R711* 0.02 TCGA-IB-AAUP-01 20 22565009 22565009 C A FOXA2 5'UTR 0.50 TCGA-IB-AAUP-01 21 47918690 47918690 C T DIP2A Missense_Mutation p.T200M 0.05 tolerated(0.08) possibly_damaging(0.447) TCGA-IB-AAUP-01 22 26423121 26423121 C T MYO18B Missense_Mutation p.A2394V 0.04 tolerated(0.41) benign(0.152) TCGA-IB-AAUP-01 2 228884216 228884216 C T SPHKAP Missense_Mutation p.V452I 0.03 tolerated(1) benign(0.001) TCGA-IB-AAUP-01 2 96873900 96873900 C T STARD7 Silent p.Q91Q 0.07 TCGA-IB-AAUP-01 3 160233331 160233331 C G KPNA4 Missense_Mutation p.G314A 0.04 deleterious(0) probably_damaging(1) TCGA-IB-AAUP-01 5 132432935 132432935 G A HSPA4 Missense_Mutation p.R629K 0.03 deleterious(0) probably_damaging(0.999) TCGA-IB-AAUP-01 5 140176604 140176604 C T PCDHA2 Silent p.G685G 0.03 TCGA-IB-AAUP-01 5 140176666 140176666 C T PCDHA2 Missense_Mutation p.A706V 0.03 deleterious_low_confidence(0.02) benign(0.055) TCGA-IB-AAUP-01 5 140516722 140516722 C T PCDHB5 Missense_Mutation p.A569V 0.03 tolerated_low_confidence(0.06) benign(0.123) TCGA-IB-AAUP-01 5 145979904 145979904 C T PPP2R2B Missense_Mutation p.V307I 0.03 tolerated(0.06) benign(0.029) TCGA-IB-AAUP-01 5 167420045 167420045 G A TENM2 Silent p.P348P 0.03 TCGA-IB-AAUP-01 5 172744699 172744699 C T STC2 3'UTR 0.07 TCGA-IB-AAUP-01 6 155776951 155776951 C T NOX3 5'UTR 0.06 TCGA-IB-AAUP-01 6 161020531 161020531 C T LPA Splice_Site p.X1096_splice 0.03 TCGA-IB-AAUP-01 7 144097345 144097345 C T NOBOX Missense_Mutation p.R302H 0.03 deleterious(0) probably_damaging(1) TCGA-IB-AAUP-01 7 4899881 4899881 C T PAPOLB Missense_Mutation p.D520N 0.04 tolerated(0.46) benign(0.014) TCGA-IB-AAUP-01 8 125058136 125058136 C T FER1L6 Silent p.D906D 0.06 TCGA-IB-AAUP-01 9 104385694 104385694 G A GRIN3A Silent p.D840D 0.05 TCGA-IB-AAUP-01 9 35092197 35092197 C G PIGO Missense_Mutation p.D563H 0.05 deleterious(0) probably_damaging(0.996) TCGA-IB-AAUP-01 9 35092359 35092359 C G PIGO Missense_Mutation p.D509H 0.07 deleterious(0.01) possibly_damaging(0.895) TCGA-IB-AAUP-01 X 105167200 105167200 C T NRK Missense_Mutation p.R902W 0.06 tolerated(0.14) benign(0.011) TCGA-IB-AAUP-01 X 13778776 13778776 C T OFD1 Missense_Mutation p.R733C 0.05 tolerated(0.09) benign(0.07) TCGA-IB-AAUP-01 X 3239037 3239037 G A MXRA5 Silent p.S1563S 0.05 TCGA-IB-AAUP-01 X 76938810 76938810 T C ATRX Silent p.L646L 0.05 TCGA-IB-AAUP-01 X 83361395 83361395 G T RPS6KA6 Missense_Mutation p.T448N 0.10 deleterious(0.03) benign(0.21) TCGA-IB-AAUQ-01 10 116698211 116698211 T C TRUB1 Missense_Mutation p.S67P 0.23 deleterious(0.01) benign(0.307) TCGA-IB-AAUQ-01 10 98799862 98799862 C - SLIT1 Frame_Shift_Del p.G727Afs*65 0.20 TCGA-IB-AAUQ-01 11 113295218 113295218 G A DRD2 Silent p.N52N 0.10 TCGA-IB-AAUQ-01 11 125550800 125550800 G A ACRV1 5'UTR 0.12 TCGA-IB-AAUQ-01 11 61645989 61645989 C T FADS3 Missense_Mutation p.V248I 0.13 tolerated(0.15) benign(0.01) TCGA-IB-AAUQ-01 11 64572244 64572244 G A MEN1 Silent p.A470A 0.13 TCGA-IB-AAUQ-01 12 10568367 10568367 C T KLRC3 Missense_Mutation p.R205H 0.12 tolerated(0.99) benign(0.001) TCGA-IB-AAUQ-01 12 113442853 113442853 G A OAS2 Missense_Mutation p.V432I 0.13 tolerated(1) benign(0.004) TCGA-IB-AAUQ-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.11 deleterious(0) benign(0.361) TCGA-IB-AAUQ-01 12 41966623 41966623 A C PDZRN4 Missense_Mutation p.Q681P 0.11 tolerated(0.12) probably_damaging(0.993) TCGA-IB-AAUQ-01 12 53242653 53242653 C T KRT78 Missense_Mutation p.R21H 0.10 tolerated(0.55) possibly_damaging(0.522) TCGA-IB-AAUQ-01 12 56118220 56118220 C A RDH5 Missense_Mutation p.P283Q 0.11 deleterious(0.01) possibly_damaging(0.737) TCGA-IB-AAUQ-01 13 19751261 19751261 C T TUBA3C Missense_Mutation p.V288M 0.11 deleterious_low_confidence(0) benign(0.118) TCGA-IB-AAUQ-01 13 32850630 32850630 C T FRY Silent p.L2772L 0.11 TCGA-IB-AAUQ-01 13 37598272 37598274 AGG - SUPT20H In_Frame_Del p.P497del 0.08 TCGA-IB-AAUQ-01 13 53013235 53013235 C G VPS36 Missense_Mutation p.K78N 0.14 deleterious(0.01) possibly_damaging(0.468) TCGA-IB-AAUQ-01 14 55618581 55618581 C T DLGAP5 Missense_Mutation p.A734T 0.10 tolerated(0.15) benign(0.017) TCGA-IB-AAUQ-01 15 28474973 28474973 C T HERC2 Silent p.L1610L 0.07 TCGA-IB-AAUQ-01 15 44888457 44888457 T A SPG11 Missense_Mutation p.S1420C 0.08 deleterious(0.03) possibly_damaging(0.634) TCGA-IB-AAUQ-01 15 75042757 75042757 C T CYP1A2 Silent p.F226F 0.14 TCGA-IB-AAUQ-01 15 90784172 90784172 C A GDPGP1 Missense_Mutation p.S11Y 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.59) TCGA-IB-AAUQ-01 16 19498557 19498557 C T TMC5 Missense_Mutation p.R828W 0.14 deleterious(0) probably_damaging(1) TCGA-IB-AAUQ-01 16 24366270 24366270 G A CACNG3 Missense_Mutation p.A138T 0.15 deleterious(0.02) possibly_damaging(0.698) TCGA-IB-AAUQ-01 17 7578395 7578395 G A TP53 Missense_Mutation p.H179Y 0.09 deleterious(0) probably_damaging(1) TCGA-IB-AAUQ-01 19 30500170 30500170 C T URI1 Silent p.D315D 0.04 TCGA-IB-AAUQ-01 19 34922781 34922781 G A UBA2 Missense_Mutation p.V80I 0.14 tolerated(0.34) benign(0.129) TCGA-IB-AAUQ-01 19 40022900 40022900 G C EID2B 3'UTR 0.12 TCGA-IB-AAUQ-01 19 40023035 40023035 G A EID2B Silent p.P136P 0.09 TCGA-IB-AAUQ-01 19 41351999 41351999 C G CYP2A6 Missense_Mutation p.E279Q 0.22 benign(0.002) TCGA-IB-AAUQ-01 19 5789413 5789413 G C DUS3L Missense_Mutation p.F235L 0.14 tolerated(1) benign(0) TCGA-IB-AAUQ-01 19 58491598 58491598 A C ZNF606 Missense_Mutation p.I150M 0.09 deleterious(0.02) benign(0.186) TCGA-IB-AAUQ-01 1 156939813 156939813 T C ARHGEF11 Missense_Mutation p.D242G 0.09 deleterious(0.03) benign(0.06) TCGA-IB-AAUQ-01 1 204970416 204970416 T A NFASC Splice_Site p.X1046_splice 0.12 TCGA-IB-AAUQ-01 1 207640107 207640107 G A CR2 Missense_Mutation p.G99R 0.13 deleterious(0) probably_damaging(0.99) TCGA-IB-AAUQ-01 1 228004950 228004950 G A PRSS38 Missense_Mutation p.V118I 0.12 tolerated(0.4) benign(0.069) TCGA-IB-AAUQ-01 1 228547344 228547344 C T OBSCN Intron 0.09 TCGA-IB-AAUQ-01 1 23239043 23239043 G A EPHB2 Missense_Mutation p.A936T 0.10 tolerated(0.76) benign(0.008) TCGA-IB-AAUQ-01 1 25229012 25229012 C T RUNX3 Silent p.T297T 0.10 TCGA-IB-AAUQ-01 20 44839199 44839199 G A CDH22 Missense_Mutation p.R345C 0.12 deleterious(0.01) benign(0.006) TCGA-IB-AAUQ-01 21 46078062 46078062 G A KRTAP12-3 Missense_Mutation p.V56M 0.12 tolerated(0.07) benign(0.004) TCGA-IB-AAUQ-01 22 39079827 39079827 C T TOMM22 Missense_Mutation p.S137L 0.12 tolerated(0.16) benign(0.001) TCGA-IB-AAUQ-01 2 27746362 27746362 C T GCKR 3'UTR 0.14 TCGA-IB-AAUQ-01 2 32774524 32774524 T C BIRC6 Missense_Mutation p.S4374P 0.10 probably_damaging(0.939) TCGA-IB-AAUQ-01 3 112324405 112324405 C T CCDC80 Silent p.A904A 0.12 TCGA-IB-AAUQ-01 3 123953690 123953690 C T KALRN Nonsense_Mutation p.R53* 0.12 TCGA-IB-AAUQ-01 3 193374974 193374974 G C OPA1 Missense_Mutation p.E744Q 0.11 tolerated(0.1) possibly_damaging(0.466) TCGA-IB-AAUQ-01 3 25641006 25641006 C A TOP2B Missense_Mutation p.A1539S 0.19 tolerated_low_confidence(0.53) benign(0.005) TCGA-IB-AAUQ-01 3 66434562 66434562 C T LRIG1 Missense_Mutation p.A642T 0.05 deleterious(0) probably_damaging(0.999) TCGA-IB-AAUQ-01 4 5755572 5755572 C T EVC Missense_Mutation p.T459M 0.16 tolerated(0.35) benign(0.019) TCGA-IB-AAUQ-01 5 137217667 137217667 G A MYOT Missense_Mutation p.R230K 0.16 tolerated(0.2) benign(0.109) TCGA-IB-AAUQ-01 5 13766211 13766211 G A DNAH5 Silent p.C3325C 0.14 TCGA-IB-AAUQ-01 5 140209287 140209287 G A PCDHA6 Silent p.A537A 0.13 TCGA-IB-AAUQ-01 5 140248986 140248986 G A PCDHA11 Missense_Mutation p.A100T 0.11 tolerated_low_confidence(0.1) benign(0.101) TCGA-IB-AAUQ-01 5 140532201 140532201 G A PCDHB6 Missense_Mutation p.R788Q 0.08 tolerated_low_confidence(0.21) benign(0.054) TCGA-IB-AAUQ-01 5 140734960 140734960 C T PCDHGA4 Missense_Mutation p.R65C 0.04 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IB-AAUQ-01 5 169533031 169533031 G C FOXI1 Missense_Mutation p.E24Q 0.08 deleterious(0) probably_damaging(0.997) TCGA-IB-AAUQ-01 5 35771762 35771762 C A SPEF2 Missense_Mutation p.P1285T 0.13 tolerated(0.38) benign(0.007) TCGA-IB-AAUQ-01 5 38493808 38493808 G A LIFR Silent p.C655C 0.10 TCGA-IB-AAUQ-01 6 127471579 127471579 G A RSPO3 Missense_Mutation p.A100T 0.09 tolerated(0.27) benign(0.169) TCGA-IB-AAUQ-01 6 129920398 129920398 C T ARHGAP18 Missense_Mutation p.R559Q 0.07 deleterious(0.02) benign(0.298) TCGA-IB-AAUQ-01 7 147869372 147869372 C T CNTNAP2 Missense_Mutation p.R938C 0.20 deleterious(0) probably_damaging(1) TCGA-IB-AAUQ-01 7 150656796 150656796 C T KCNH2 Silent p.V112V 0.18 TCGA-IB-AAUQ-01 7 76112193 76112193 C T DTX2 Missense_Mutation p.R213C 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-IB-AAUQ-01 7 82791717 82791717 C T PCLO Silent p.Q64Q 0.18 TCGA-IB-AAUQ-01 7 95115286 95115286 G A ASB4 Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0) benign(0.024) TCGA-IB-AAUQ-01 8 144688047 144688047 C T PYCRL Silent p.T228T 0.12 TCGA-IB-AAUQ-01 8 67998296 67998296 A T CSPP1 Missense_Mutation p.H121L 0.14 deleterious(0.04) benign(0.283) TCGA-IB-AAUQ-01 8 73848876 73848876 G A KCNB2 Missense_Mutation p.R429H 0.12 deleterious(0) probably_damaging(0.999) TCGA-IB-AAUQ-01 9 119106961 119106961 C T PAPPA Missense_Mutation p.R1251W 0.10 tolerated(0.16) benign(0.061) TCGA-IB-AAUQ-01 9 35738753 35738753 C T GBA2 Missense_Mutation p.C648Y 0.08 deleterious(0) probably_damaging(0.962) TCGA-IB-AAUQ-01 X 137715118 137715118 C T FGF13 Missense_Mutation p.D221N 0.21 tolerated(0.05) benign(0.042) TCGA-IB-AAUQ-01 X 55170072 55170072 G A FAM104B 3'Flank 0.09 TCGA-IB-AAUR-01 14 74058829 74058829 G A ACOT4 Missense_Mutation p.A56T 0.10 tolerated(0.34) benign(0.001) TCGA-IB-AAUR-01 17 65882284 65882284 T C BPTF Intron 0.03 TCGA-IB-AAUR-01 18 48591901 48591901 A G SMAD4 Missense_Mutation p.D355G 0.04 deleterious(0) probably_damaging(1) TCGA-IB-AAUR-01 1 150971955 150971955 C T FAM63A Missense_Mutation p.A339T 0.02 deleterious(0) probably_damaging(0.999) TCGA-IB-AAUR-01 1 153800794 153800794 G A GATAD2B Silent p.R10R 0.07 TCGA-IB-AAUR-01 20 40827887 40827887 G A PTPRT Silent p.N828N 0.02 TCGA-IB-AAUR-01 7 30795239 30795239 G A INMT Silent p.K188K 0.03 TCGA-IB-AAUR-01 8 132052268 132052268 G A ADCY8 Silent p.C104C 0.12 TCGA-IB-AAUR-01 9 127650651 127650651 G A GOLGA1 Missense_Mutation p.P596S 0.03 tolerated(0.66) benign(0.002) TCGA-IB-AAUS-01 10 93261004 93261004 A G HECTD2 Missense_Mutation p.H708R 0.03 tolerated(0.38) benign(0.021) TCGA-IB-AAUS-01 16 84050178 84050178 C T SLC38A8 Missense_Mutation p.E370K 0.05 tolerated(1) benign(0.044) TCGA-IB-AAUS-01 17 12043158 12043158 T G MAP2K4 Missense_Mutation p.L348R 0.03 deleterious(0) probably_damaging(0.999) TCGA-IB-AAUS-01 2 74717251 74717251 C T TTC31 Missense_Mutation p.H77Y 0.12 tolerated_low_confidence(0.14) possibly_damaging(0.623) TCGA-IB-AAUS-01 7 98573795 98573795 C T TRRAP Silent p.F2614F 0.03 TCGA-IB-AAUS-01 8 145024775 145024775 G A PLEC Missense_Mutation p.R34C 0.10 unknown(0) TCGA-IB-AAUU-01 10 105182763 105182763 C T PDCD11 Missense_Mutation p.T839M 0.13 tolerated(0.08) benign(0.046) TCGA-IB-AAUU-01 10 31816226 31816226 A G ZEB1 3'UTR 0.25 TCGA-IB-AAUU-01 10 50819803 50819803 G T SLC18A3 Silent p.V339V 0.12 TCGA-IB-AAUU-01 10 68940134 68940134 C T CTNNA3 Missense_Mutation p.A330T 0.03 tolerated(0.21) benign(0.012) TCGA-IB-AAUU-01 11 111225288 111225288 C T POU2AF1 Missense_Mutation p.A157T 0.19 tolerated(0.05) benign(0.013) TCGA-IB-AAUU-01 11 1157562 1157563 - T MUC5AC Frame_Shift_Ins p.Q249Sfs*6 0.18 TCGA-IB-AAUU-01 11 56950145 56950145 C T LRRC55 Missense_Mutation p.R260C 0.12 deleterious(0) possibly_damaging(0.804) TCGA-IB-AAUU-01 11 63971050 63971050 C T STIP1 Silent p.R505R 0.28 TCGA-IB-AAUU-01 11 65630663 65630663 G A MUS81 Missense_Mutation p.A245T 0.26 tolerated(0.22) benign(0.002) TCGA-IB-AAUU-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.24 deleterious(0.03) benign(0.376) TCGA-IB-AAUU-01 13 109779791 109779791 G A MYO16 Missense_Mutation p.R1293Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-IB-AAUU-01 14 21852252 21852252 G T SUPT16H 5'UTR 0.52 TCGA-IB-AAUU-01 14 21961173 21961173 T C TOX4 Silent p.P466P 0.09 TCGA-IB-AAUU-01 14 24780173 24780173 C T LTB4R2 Silent p.C101C 0.12 TCGA-IB-AAUU-01 14 50704423 50704423 G A L2HGDH Missense_Mutation p.P406L 0.11 deleterious(0) probably_damaging(0.995) TCGA-IB-AAUU-01 14 75276279 75276279 G A YLPM1 Missense_Mutation p.R1573Q 0.23 probably_damaging(0.975) TCGA-IB-AAUU-01 14 99641568 99641568 C G BCL11B Missense_Mutation p.E535D 0.08 tolerated(0.1) probably_damaging(0.968) TCGA-IB-AAUU-01 15 28517442 28517442 G A HERC2 Silent p.S334S 0.03 TCGA-IB-AAUU-01 15 32460285 32460285 G A CHRNA7 Missense_Mutation p.A408T 0.19 tolerated(0.66) benign(0.002) TCGA-IB-AAUU-01 16 56920974 56920974 A G SLC12A3 Missense_Mutation p.D716G 0.08 deleterious(0.03) benign(0.049) TCGA-IB-AAUU-01 16 70908762 70908762 C T HYDIN Missense_Mutation p.A3540T 0.23 benign(0.001) TCGA-IB-AAUU-01 17 41570293 41570293 C T DHX8 Missense_Mutation p.R250W 0.25 deleterious(0.01) benign(0.006) TCGA-IB-AAUU-01 17 7579320 7579321 - C TP53 Frame_Shift_Ins p.T123Dfs*26 0.21 TCGA-IB-AAUU-01 17 7727588 7727588 C T DNAH2 Silent p.I3876I 0.17 TCGA-IB-AAUU-01 19 12060731 12060731 C T ZNF700 Missense_Mutation p.S631F 0.17 tolerated(0.69) probably_damaging(0.942) TCGA-IB-AAUU-01 19 30506110 30506110 C T URI1 3'UTR 0.11 TCGA-IB-AAUU-01 19 34180166 34180166 G A CHST8 5'UTR 0.10 TCGA-IB-AAUU-01 19 3574395 3574395 C T HMG20B Silent p.R54R 0.24 TCGA-IB-AAUU-01 19 36940853 36940853 A - ZNF566 Frame_Shift_Del p.Y96Mfs*3 0.12 TCGA-IB-AAUU-01 19 45867502 45867502 G A ERCC2 Missense_Mutation p.T269M 0.13 tolerated(0.07) benign(0.351) TCGA-IB-AAUU-01 1 12632837 12632837 C T DHRS3 Missense_Mutation p.R248Q 0.09 tolerated(0.75) benign(0.001) TCGA-IB-AAUU-01 1 8421270 8421270 G A RERE Missense_Mutation p.P766L 0.24 possibly_damaging(0.908) TCGA-IB-AAUU-01 1 87814471 87814471 G T LMO4 3'UTR 0.14 TCGA-IB-AAUU-01 1 92755861 92755861 T A GLMN Missense_Mutation p.L96F 0.16 tolerated(0.08) probably_damaging(0.938) TCGA-IB-AAUU-01 20 35444329 35444329 C T SOGA1 Missense_Mutation p.G506R 0.15 tolerated(0.12) probably_damaging(0.994) TCGA-IB-AAUU-01 20 47262580 47262580 G A PREX1 Silent p.I1107I 0.27 TCGA-IB-AAUU-01 21 30699086 30699086 C T BACH1 Missense_Mutation p.S314F 0.17 deleterious(0) possibly_damaging(0.603) TCGA-IB-AAUU-01 21 47976980 47976980 C T DIP2A Silent p.C1209C 0.10 TCGA-IB-AAUU-01 22 50646953 50646954 - CTTC SELO Intron 0.36 TCGA-IB-AAUU-01 2 179407109 179407109 C T TTN Silent p.T32458T 0.27 TCGA-IB-AAUU-01 2 197187274 197187274 C T HECW2 Missense_Mutation p.R271H 0.12 deleterious(0) probably_damaging(0.999) TCGA-IB-AAUU-01 2 220136184 220136184 C T TUBA4B RNA 0.27 TCGA-IB-AAUU-01 2 242793208 242793208 G A PDCD1 3'UTR 0.03 TCGA-IB-AAUU-01 2 97875608 97875608 A G ANKRD36 Silent p.T1122T 0.30 TCGA-IB-AAUU-01 3 140178467 140178467 G A CLSTN2 Missense_Mutation p.G360S 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-IB-AAUU-01 3 141535562 141535562 G T GRK7 Missense_Mutation p.K444N 0.12 tolerated(0.23) benign(0.002) TCGA-IB-AAUU-01 4 155929 155929 G A ZNF718 RNA 0.12 TCGA-IB-AAUU-01 4 188924640 188924640 G A ZFP42 Missense_Mutation p.V227I 0.16 tolerated(0.24) benign(0) TCGA-IB-AAUU-01 4 38023260 38023260 G T TBC1D1 Missense_Mutation p.Q377H 0.07 deleterious(0.02) probably_damaging(0.997) TCGA-IB-AAUU-01 4 48379970 48379970 C G SLAIN2 Missense_Mutation p.P199R 0.27 deleterious(0) benign(0.372) TCGA-IB-AAUU-01 5 140515477 140515478 - A PCDHB5 Frame_Shift_Ins p.I156Nfs*6 0.17 TCGA-IB-AAUU-01 5 178413350 178413350 G A GRM6 Silent p.Y635Y 0.30 TCGA-IB-AAUU-01 5 41065559 41065559 C A MROH2B Missense_Mutation p.V79F 0.09 deleterious(0) probably_damaging(0.943) TCGA-IB-AAUU-01 6 27834834 27834845 CTTCTTCGGAGT - HIST1H1B In_Frame_Del p.T155_K158del 0.08 TCGA-IB-AAUU-01 7 137263014 137263014 A C DGKI Splice_Site p.X566_splice 0.09 TCGA-IB-AAUU-01 7 153584728 153584728 C T DPP6 5'UTR 0.30 TCGA-IB-AAUU-01 7 20793112 20793112 G A ABCB5 Missense_Mutation p.D1187N 0.14 deleterious(0) probably_damaging(1) TCGA-IB-AAUU-01 7 29132283 29132283 G A CPVL Silent p.H166H 0.13 TCGA-IB-AAUU-01 8 10383123 10383123 C T PRSS55 Silent p.L10L 0.37 TCGA-IB-AAUU-01 8 39646232 39646232 C A ADAM2 Missense_Mutation p.V200F 0.08 deleterious(0.01) benign(0.291) TCGA-IB-AAUU-01 8 40532370 40532370 C G ZMAT4 Missense_Mutation p.D144H 0.07 deleterious(0.01) possibly_damaging(0.907) TCGA-IB-AAUU-01 8 82670525 82670525 G A CHMP4C Missense_Mutation p.R211Q 0.18 tolerated(0.25) benign(0.008) TCGA-IB-AAUU-01 9 139090879 139090879 G A LHX3 Missense_Mutation p.R166C 0.24 deleterious(0) probably_damaging(0.997) TCGA-IB-AAUU-01 9 5535034 5535034 G A PDCD1LG2 Silent p.L115L 0.10 TCGA-IB-AAUU-01 X 37026745 37026745 G A FAM47C Missense_Mutation p.A88T 0.52 tolerated(0.12) possibly_damaging(0.511) TCGA-IB-AAUV-01 15 85053250 85053250 C G GOLGA6L5P RNA 0.05 TCGA-IB-AAUV-01 19 56104637 56104637 C A FIZ1 Missense_Mutation p.D224Y 0.24 deleterious(0.04) unknown(0) TCGA-IB-AAUW-01 10 132891372 132891372 G A TCERG1L 3'UTR 0.04 TCGA-IB-AAUW-01 1 67878801 67878801 A T SERBP1 3'UTR 0.13 TCGA-IB-AAUW-01 3 47891156 47891156 T C DHX30 Silent p.Y1076Y 0.04 TCGA-IB-AAUW-01 5 108717235 108717235 T C PJA2 Silent p.E67E 0.03 TCGA-LB-A7SX-01 10 100003867 100003867 C T R3HCC1L Silent p.A763A 0.18 TCGA-LB-A7SX-01 10 118897640 118897641 - A VAX1 5'Flank 0.13 TCGA-LB-A7SX-01 10 16918924 16918924 G A CUBN Silent p.F3026F 0.19 TCGA-LB-A7SX-01 10 20568836 20568836 C A PLXDC2 3'UTR 0.36 TCGA-LB-A7SX-01 10 50531971 50531971 G C C10orf71 Missense_Mutation p.D461H 0.24 tolerated(0.11) benign(0.009) TCGA-LB-A7SX-01 10 56128948 56128948 C A PCDH15 Missense_Mutation p.V136L 0.30 tolerated(0.08) benign(0.346) TCGA-LB-A7SX-01 10 5810230 5810230 C T GDI2 Missense_Mutation p.D313N 0.20 tolerated(0.34) benign(0.005) TCGA-LB-A7SX-01 10 71859992 71859992 A C H2AFY2 Missense_Mutation p.K239N 0.28 deleterious(0) possibly_damaging(0.597) TCGA-LB-A7SX-01 11 121174258 121174258 C T SC5D Silent p.F58F 0.21 TCGA-LB-A7SX-01 11 12316361 12316361 T C MICALCL Silent p.P461P 0.07 TCGA-LB-A7SX-01 11 123625215 123625215 G A OR6X1 Silent p.G4G 0.21 TCGA-LB-A7SX-01 11 128844270 128844270 G A ARHGAP32 Missense_Mutation p.S927L 0.21 tolerated(0.1) benign(0.146) TCGA-LB-A7SX-01 11 14913531 14913531 C G CYP2R1 Missense_Mutation p.G74A 0.37 deleterious(0.01) benign(0.011) TCGA-LB-A7SX-01 11 5344684 5344684 G A OR51B2 Missense_Mutation p.P282S 0.13 deleterious(0) probably_damaging(0.997) TCGA-LB-A7SX-01 11 5799446 5799446 C T OR52N5 Missense_Mutation p.R140H 0.27 tolerated(0.16) benign(0.019) TCGA-LB-A7SX-01 11 62159721 62159721 G A ASRGL1 Missense_Mutation p.D298N 0.18 tolerated(0.6) benign(0.005) TCGA-LB-A7SX-01 11 65413984 65413984 C T SIPA1 Silent p.G493G 0.13 TCGA-LB-A7SX-01 12 102591225 102591225 T C PARPBP 3'Flank 0.10 TCGA-LB-A7SX-01 12 123213884 123213884 C A HCAR1 Missense_Mutation p.D335Y 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.707) TCGA-LB-A7SX-01 12 57642585 57642585 G A STAC3 Silent p.L112L 0.49 TCGA-LB-A7SX-01 12 64536271 64536271 G A SRGAP1 Missense_Mutation p.R1026H 0.06 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-LB-A7SX-01 12 65471603 65471603 C G WIF1 Missense_Mutation p.R107P 0.45 deleterious(0.02) probably_damaging(0.959) TCGA-LB-A7SX-01 13 25272886 25272886 A G ATP12A Missense_Mutation p.T541A 0.06 deleterious(0) probably_damaging(0.994) TCGA-LB-A7SX-01 13 46054424 46054425 - G COG3 Frame_Shift_Ins 0.27 TCGA-LB-A7SX-01 13 47266759 47266759 G A LRCH1 Missense_Mutation p.R368H 0.23 tolerated(0.89) benign(0.001) TCGA-LB-A7SX-01 13 53227075 53227075 G A SUGT1 Missense_Mutation p.G7E 0.24 tolerated_low_confidence(0.18) unknown(0) TCGA-LB-A7SX-01 13 67799612 67799612 A C PCDH9 Missense_Mutation p.S987R 0.30 tolerated(0.07) probably_damaging(0.988) TCGA-LB-A7SX-01 13 70681816 70681816 G A KLHL1 Nonsense_Mutation p.R6* 0.33 TCGA-LB-A7SX-01 13 72049296 72049296 G A DACH1 Missense_Mutation p.T689I 0.25 probably_damaging(0.947) TCGA-LB-A7SX-01 14 103372120 103372120 G A TRAF3 Silent p.%3D 0.31 TCGA-LB-A7SX-01 14 20215850 20215850 G A OR4Q3 Silent p.Q88Q 0.22 TCGA-LB-A7SX-01 14 23945486 23945486 C T NGDN Nonsense_Mutation p.R195* 0.07 TCGA-LB-A7SX-01 14 52507535 52507535 G A NID2 Silent p.F620F 0.34 TCGA-LB-A7SX-01 15 25446513 25446513 G A SNORD115-17 RNA 0.04 TCGA-LB-A7SX-01 15 49304939 49304939 G A SECISBP2L Missense_Mutation p.T546I 0.03 tolerated(0.39) benign(0.059) TCGA-LB-A7SX-01 15 66210374 66210374 G A MEGF11 Silent p.N672N 0.18 TCGA-LB-A7SX-01 15 74239478 74239478 G A LOXL1 Missense_Mutation p.E474K 0.19 deleterious(0) probably_damaging(0.992) TCGA-LB-A7SX-01 15 88524482 88524482 C A NTRK3 Intron 0.30 TCGA-LB-A7SX-01 16 17353277 17353277 C G XYLT1 Missense_Mutation p.E161Q 0.24 deleterious_low_confidence(0.02) probably_damaging(0.954) TCGA-LB-A7SX-01 16 28877903 28877903 G A SH2B1 Missense_Mutation p.R163Q 0.24 tolerated(0.1) probably_damaging(0.99) TCGA-LB-A7SX-01 16 5141882 5141882 G A FAM86A Silent p.H85H 0.27 TCGA-LB-A7SX-01 16 633027 633027 C A PIGQ Missense_Mutation p.A559E 0.05 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-LB-A7SX-01 16 67865088 67865088 C G CENPT Intron 0.17 TCGA-LB-A7SX-01 16 76572111 76572111 C T CNTNAP4 Missense_Mutation p.H959Y 0.26 tolerated(1) benign(0.049) TCGA-LB-A7SX-01 17 2233651 2233651 C T TSR1 Intron 0.06 TCGA-LB-A7SX-01 17 2233660 2233660 C T TSR1 Intron 0.06 TCGA-LB-A7SX-01 17 37571341 37571341 G A MED1 Silent p.L479L 0.03 TCGA-LB-A7SX-01 17 40997985 40997985 G A AOC2 Missense_Mutation p.G448S 0.30 deleterious(0) probably_damaging(0.993) TCGA-LB-A7SX-01 17 71189181 71189181 T C COG1 5'UTR 0.27 TCGA-LB-A7SX-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.48 TCGA-LB-A7SX-01 17 8017832 8017832 G A ALOXE3 Missense_Mutation p.T349M 0.05 tolerated(0.06) benign(0.177) TCGA-LB-A7SX-01 18 10691258 10691258 C G PIEZO2 Missense_Mutation p.K2325N 0.29 deleterious(0) benign(0.129) TCGA-LB-A7SX-01 18 19996570 19996570 C T CTAGE1 Missense_Mutation p.R402Q 0.05 deleterious(0) possibly_damaging(0.527) TCGA-LB-A7SX-01 18 22804704 22804704 G T ZNF521 Missense_Mutation p.H1060N 0.04 tolerated_low_confidence(0.77) benign(0.001) TCGA-LB-A7SX-01 19 14515219 14515219 G A CD97 Missense_Mutation p.E492K 0.33 tolerated(0.66) benign(0.344) TCGA-LB-A7SX-01 19 33699875 33699875 G A SLC7A10 Silent p.D498D 0.29 TCGA-LB-A7SX-01 19 35941517 35941517 C T FFAR2 Missense_Mutation p.R301C 0.32 tolerated(0.29) benign(0.003) TCGA-LB-A7SX-01 19 43430840 43430840 G C PSG7 Missense_Mutation p.I246M 0.03 tolerated(0.22) possibly_damaging(0.789) TCGA-LB-A7SX-01 19 51363090 51363090 G A KLK3 Intron 0.34 TCGA-LB-A7SX-01 19 691972 691972 G A PRSS57 Silent p.G89G 0.40 TCGA-LB-A7SX-01 19 9064306 9064306 G A MUC16 Missense_Mutation p.P7714S 0.15 unknown(0) TCGA-LB-A7SX-01 1 100701025 100701025 C G DBT Missense_Mutation p.G73A 0.18 deleterious(0) probably_damaging(1) TCGA-LB-A7SX-01 1 149916371 149916371 G A OTUD7B Silent p.F639F 0.20 TCGA-LB-A7SX-01 1 155233761 155233761 C G CLK2 Missense_Mutation p.E432Q 0.19 deleterious(0.03) possibly_damaging(0.848) TCGA-LB-A7SX-01 1 16953753 16953753 G A CROCCP2 3'Flank 0.08 TCGA-LB-A7SX-01 1 17271988 17271988 C T CROCC Missense_Mutation p.R675C 0.06 probably_damaging(0.962) TCGA-LB-A7SX-01 1 180793903 180793903 G T XPR1 Nonsense_Mutation p.E260* 0.24 TCGA-LB-A7SX-01 1 22416480 22416480 C T CDC42 Intron 0.14 TCGA-LB-A7SX-01 1 248487100 248487100 G A OR2M7 Silent p.F257F 0.04 TCGA-LB-A7SX-01 1 25717263 25717263 G A RHCE Missense_Mutation p.H260Y 0.09 deleterious(0.02) probably_damaging(0.984) TCGA-LB-A7SX-01 1 29476660 29476660 C T SRSF4 Missense_Mutation p.S208N 0.31 deleterious(0.03) benign(0.213) TCGA-LB-A7SX-01 1 54269611 54269611 G A NDC1 Silent p.L352L 0.28 TCGA-LB-A7SX-01 1 65310517 65310517 C T JAK1 Missense_Mutation p.R724H 0.04 deleterious(0) probably_damaging(1) TCGA-LB-A7SX-01 1 68895359 68895359 C A RPE65 3'UTR 0.19 TCGA-LB-A7SX-01 1 86313406 86313406 G T COL24A1 Missense_Mutation p.P1135H 0.34 tolerated(0.09) benign(0.325) TCGA-LB-A7SX-01 20 44828152 44828152 C G CDH22 Missense_Mutation p.D445H 0.07 tolerated(0.16) probably_damaging(1) TCGA-LB-A7SX-01 20 47324868 47324868 T C PREX1 Missense_Mutation p.N238S 0.31 deleterious(0.01) benign(0.361) TCGA-LB-A7SX-01 20 52192921 52192921 C T ZNF217 Silent p.Q794Q 0.30 TCGA-LB-A7SX-01 20 62626750 62626750 G A PRPF6 Missense_Mutation p.G229E 0.33 deleterious(0.02) probably_damaging(0.91) TCGA-LB-A7SX-01 21 11039053 11039053 C T BAGE2 RNA 0.02 TCGA-LB-A7SX-01 21 19666604 19666604 G A TMPRSS15 Silent p.A823A 0.16 TCGA-LB-A7SX-01 21 41032648 41032648 G A B3GALT5 Silent p.Q54Q 0.21 TCGA-LB-A7SX-01 21 47686068 47686068 C T MCM3AP Silent p.L934L 0.03 TCGA-LB-A7SX-01 22 23237904 23237904 C A IGLL5 3'UTR 0.09 TCGA-LB-A7SX-01 22 23237907 23237907 G A IGLL5 3'UTR 0.09 TCGA-LB-A7SX-01 22 36915498 36915498 C T EIF3D Missense_Mutation p.R222H 0.27 deleterious(0.02) probably_damaging(0.988) TCGA-LB-A7SX-01 22 47087589 47087589 G T CERK Silent p.P404P 0.18 TCGA-LB-A7SX-01 2 100623429 100623429 G T AFF3 Missense_Mutation p.Q205K 0.06 deleterious(0.02) probably_damaging(0.986) TCGA-LB-A7SX-01 2 109367778 109367778 G A RANBP2 Nonsense_Mutation p.W444* 0.26 TCGA-LB-A7SX-01 2 133887563 133887563 G T NCKAP5 Missense_Mutation p.Q110K 0.26 deleterious(0.02) benign(0.307) TCGA-LB-A7SX-01 2 163144827 163144827 C T IFIH1 Missense_Mutation p.E305K 0.27 deleterious(0.01) possibly_damaging(0.867) TCGA-LB-A7SX-01 2 206166502 206166502 G A PARD3B Intron 0.27 TCGA-LB-A7SX-01 2 232104753 232104753 C T ARMC9 Missense_Mutation p.T293M 0.44 deleterious(0) probably_damaging(0.991) TCGA-LB-A7SX-01 2 235949825 235949825 G A SH3BP4 Missense_Mutation p.E138K 0.11 tolerated(0.09) probably_damaging(0.979) TCGA-LB-A7SX-01 2 37365423 37365423 G A EIF2AK2 Missense_Mutation p.S226L 0.07 deleterious(0.04) benign(0.002) TCGA-LB-A7SX-01 2 73451115 73451115 T G SMYD5 Missense_Mutation p.F308L 0.11 deleterious(0) benign(0.266) TCGA-LB-A7SX-01 2 99169316 99169316 G A INPP4A Missense_Mutation p.A416T 0.05 tolerated(0.14) possibly_damaging(0.701) TCGA-LB-A7SX-01 3 111286413 111286413 G C CD96 Missense_Mutation p.E154D 0.05 tolerated(0.27) benign(0.214) TCGA-LB-A7SX-01 3 119962536 119962536 G A GPR156 Silent p.L62L 0.34 TCGA-LB-A7SX-01 3 123010065 123010065 G A ADCY5 Silent p.F1074F 0.19 TCGA-LB-A7SX-01 3 142142485 142142485 C T XRN1 Splice_Site p.X210_splice 0.20 TCGA-LB-A7SX-01 3 172480552 172480552 C A ECT2 Missense_Mutation p.L321I 0.32 tolerated(0.08) benign(0.02) TCGA-LB-A7SX-01 3 196304578 196304578 T C FBXO45 Silent p.S191S 0.32 TCGA-LB-A7SX-01 3 41266124 41266124 A G CTNNB1 Missense_Mutation p.T41A 0.47 deleterious(0) possibly_damaging(0.844) TCGA-LB-A7SX-01 3 47455391 47455391 C T SCAP Missense_Mutation p.E1265K 0.04 deleterious(0.01) possibly_damaging(0.77) TCGA-LB-A7SX-01 4 104640521 104640521 G C TACR3 Silent p.L104L 0.06 TCGA-LB-A7SX-01 4 108641321 108641321 C T PAPSS1 Silent p.G5G 0.25 TCGA-LB-A7SX-01 4 108940775 108940775 G A HADH Missense_Mutation p.A167T 0.36 deleterious(0) benign(0.116) TCGA-LB-A7SX-01 4 118005357 118005357 C T TRAM1L1 3'UTR 0.18 TCGA-LB-A7SX-01 4 118005363 118005363 C A TRAM1L1 3'UTR 0.17 TCGA-LB-A7SX-01 4 146073752 146073752 T A OTUD4 Silent p.A238A 0.20 TCGA-LB-A7SX-01 4 153253860 153253861 AT - FBXW7 Frame_Shift_Del p.Y291Cfs*25 0.29 TCGA-LB-A7SX-01 4 157689125 157689125 G A PDGFC Silent p.L241L 0.04 TCGA-LB-A7SX-01 4 164087987 164087987 T A NAF1 5'UTR 0.60 TCGA-LB-A7SX-01 4 6107248 6107248 G A JAKMIP1 Silent p.D192D 0.35 TCGA-LB-A7SX-01 5 140616014 140616014 C T PCDHB18 RNA 0.38 TCGA-LB-A7SX-01 5 171510042 171510042 G A STK10 Missense_Mutation p.R578W 0.05 deleterious(0) probably_damaging(0.996) TCGA-LB-A7SX-01 5 5182355 5182355 C A ADAMTS16 Missense_Mutation p.H234N 0.34 tolerated(0.11) benign(0.004) TCGA-LB-A7SX-01 6 100006272 100006272 C G CCNC Intron 0.09 TCGA-LB-A7SX-01 6 105609437 105609437 G A POPDC3 Silent p.F116F 0.46 TCGA-LB-A7SX-01 6 119285893 119285893 G A FAM184A Missense_Mutation p.T1026I 0.09 deleterious(0) probably_damaging(0.997) TCGA-LB-A7SX-01 6 146350993 146350993 G A GRM1 Missense_Mutation p.V114M 0.11 deleterious(0) probably_damaging(0.998) TCGA-LB-A7SX-01 6 22290545 22290545 C T PRL Missense_Mutation p.R117Q 0.48 tolerated(0.35) benign(0.443) TCGA-LB-A7SX-01 6 27833264 27833264 C T HIST1H2AL Silent p.V44V 0.06 TCGA-LB-A7SX-01 7 105182892 105182892 G A RINT1 Missense_Mutation p.R104Q 0.09 tolerated(1) benign(0) TCGA-LB-A7SX-01 7 143002066 143002066 G T CASP2 Missense_Mutation p.A421S 0.28 tolerated(0.3) possibly_damaging(0.852) TCGA-LB-A7SX-01 7 151860794 151860794 G - KMT2C Frame_Shift_Del p.L3290* 0.30 TCGA-LB-A7SX-01 7 154862970 154862970 G A HTR5A-AS1 Missense_Mutation p.S15L 0.06 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-LB-A7SX-01 7 18788739 18788739 C A HDAC9 Missense_Mutation p.T674N 0.24 tolerated(0.1) benign(0.136) TCGA-LB-A7SX-01 7 42018283 42018283 G T GLI3 Nonsense_Mutation p.S521* 0.35 TCGA-LB-A7SX-01 7 82585369 82585369 C T PCLO Missense_Mutation p.D1634N 0.20 unknown(0) TCGA-LB-A7SX-01 7 99755385 99755385 T A C7orf43 Missense_Mutation p.I170F 0.23 tolerated(0.05) benign(0.136) TCGA-LB-A7SX-01 8 101153416 101153416 G A FBXO43 Nonsense_Mutation p.Q356* 0.26 TCGA-LB-A7SX-01 8 109796314 109796314 T C TMEM74 3'UTR 0.36 TCGA-LB-A7SX-01 8 145066090 145066090 G C GRINA Silent p.T179T 0.22 TCGA-LB-A7SX-01 8 48691183 48691183 A C PRKDC Missense_Mutation p.F3896C 0.19 probably_damaging(0.986) TCGA-LB-A7SX-01 8 49643125 49643125 C A EFCAB1 Missense_Mutation p.R98L 0.12 deleterious(0) possibly_damaging(0.746) TCGA-LB-A7SX-01 8 95538657 95538657 C T KIAA1429 Silent p.V605V 0.05 TCGA-LB-A7SX-01 9 41962541 41962541 T C RP11-204M4.2 RNA 0.31 TCGA-LB-A7SX-01 9 90535452 90535452 C T SPATA31C1 RNA 0.07 TCGA-LB-A7SX-01 9 98279109 98279109 C T RP11-435O5.4 3'Flank 0.04 TCGA-LB-A7SX-01 X 108780167 108780167 C T NXT2 Missense_Mutation p.P33S 0.11 tolerated_low_confidence(0.15) benign(0.001) TCGA-LB-A7SX-01 X 109697313 109697313 A G RGAG1 Silent p.E1156E 0.11 TCGA-LB-A7SX-01 X 22292031 22292031 C T ZNF645 Missense_Mutation p.S308L 0.04 tolerated(1) benign(0) TCGA-LB-A7SX-01 X 50377159 50377159 A G SHROOM4 Silent p.S638S 0.10 TCGA-LB-A8F3-01 10 102721685 102721685 C A FAM178A 3'Flank 0.09 TCGA-LB-A8F3-01 10 102763860 102763860 C T LZTS2 Silent p.D335D 0.04 TCGA-LB-A8F3-01 10 123503198 123503198 G A ATE1 Silent p.N518N 0.05 TCGA-LB-A8F3-01 10 86132185 86132185 C T CCSER2 Silent p.A459A 0.05 TCGA-LB-A8F3-01 11 105782776 105782776 T A GRIA4 Intron 0.11 TCGA-LB-A8F3-01 11 14991575 14991575 C T CALCA Missense_Mutation p.D45N 0.29 deleterious(0.02) benign(0.029) TCGA-LB-A8F3-01 11 44286499 44286499 C G ALX4 Missense_Mutation p.E381Q 0.04 deleterious(0.03) benign(0.43) TCGA-LB-A8F3-01 11 56113884 56113884 A G OR8K1 Missense_Mutation p.M124V 0.23 deleterious_low_confidence(0) possibly_damaging(0.625) TCGA-LB-A8F3-01 12 123333155 123333170 TGTGAGTAGCAGCTGC - HIP1R Splice_Site p.X100_splice 0.20 TCGA-LB-A8F3-01 12 2566843 2566843 G A CACNA1C Missense_Mutation p.R243H 0.06 deleterious(0) probably_damaging(0.972) TCGA-LB-A8F3-01 12 4920759 4920759 C T KCNA6 Missense_Mutation p.R518W 0.03 tolerated_low_confidence(0.11) possibly_damaging(0.876) TCGA-LB-A8F3-01 12 66709127 66709128 - A HELB Frame_Shift_Ins p.A656Sfs*22 0.12 TCGA-LB-A8F3-01 13 99566593 99566593 C T DOCK9 Missense_Mutation p.E317K 0.10 tolerated(0.11) benign(0.205) TCGA-LB-A8F3-01 14 23528647 23528647 T G ACIN1 Missense_Mutation p.K1246Q 0.23 unknown(0) TCGA-LB-A8F3-01 15 63893997 63893998 - A FBXL22 3'UTR 0.46 TCGA-LB-A8F3-01 16 56401435 56401435 G A AMFR Missense_Mutation p.S507L 0.02 tolerated(0.48) benign(0.001) TCGA-LB-A8F3-01 16 57075463 57075463 C G NLRC5 Missense_Mutation p.C1002W 0.13 deleterious(0.04) possibly_damaging(0.895) TCGA-LB-A8F3-01 16 87866376 87866376 G A SLC7A5 3'UTR 0.08 TCGA-LB-A8F3-01 16 8875358 8875358 C A ABAT 3'UTR 0.08 TCGA-LB-A8F3-01 17 72832228 72832228 C G TMEM104 Missense_Mutation p.S298C 0.10 deleterious(0.02) possibly_damaging(0.778) TCGA-LB-A8F3-01 19 33134064 33134064 A T ANKRD27 Silent p.L249L 0.03 TCGA-LB-A8F3-01 19 4216640 4216640 G A ANKRD24 Missense_Mutation p.E495K 0.14 deleterious(0) possibly_damaging(0.651) TCGA-LB-A8F3-01 19 49845730 49845730 T A TEAD2 Missense_Mutation p.M403L 0.08 deleterious(0.03) benign(0.139) TCGA-LB-A8F3-01 19 8807880 8807880 C T ACTL9 Missense_Mutation p.R391H 0.13 tolerated(0.12) benign(0.005) TCGA-LB-A8F3-01 1 158299919 158299919 G A CD1B Silent p.Y110Y 0.03 TCGA-LB-A8F3-01 1 177245375 177245375 G A BRINP2 Missense_Mutation p.V273I 0.06 tolerated(0.19) benign(0.192) TCGA-LB-A8F3-01 1 204412697 204412697 G A PIK3C2B Nonsense_Mutation p.Q966* 0.04 TCGA-LB-A8F3-01 20 44675062 44675062 C T SLC12A5 Nonsense_Mutation p.R615* 0.04 TCGA-LB-A8F3-01 20 61444217 61444217 G A OGFR Missense_Mutation p.C417Y 0.05 deleterious(0) probably_damaging(0.999) TCGA-LB-A8F3-01 20 62669916 62669917 - CCGGG ZNF512B Intron 0.33 TCGA-LB-A8F3-01 2 108507215 108507215 T G RGPD4 3'UTR 0.05 TCGA-LB-A8F3-01 2 187626909 187626909 C T FAM171B Missense_Mutation p.P614S 0.10 tolerated(0.35) benign(0.163) TCGA-LB-A8F3-01 2 192261178 192261178 A G MYO1B Silent p.T750T 0.03 TCGA-LB-A8F3-01 2 65243676 65243676 T A SLC1A4 Silent p.S301S 0.04 TCGA-LB-A8F3-01 2 99013711 99013711 A G CNGA3 Missense_Mutation p.Q693R 0.04 tolerated_low_confidence(0.12) benign(0.039) TCGA-LB-A8F3-01 3 169644499 169644499 T C SAMD7 Missense_Mutation p.L150P 0.15 deleterious(0.01) benign(0.04) TCGA-LB-A8F3-01 4 166418761 166418761 A T CPE Nonstop_Mutation p.*477Lext*4 0.24 TCGA-LB-A8F3-01 4 8230216 8230216 T A SH3TC1 Missense_Mutation p.L932Q 0.14 deleterious(0) probably_damaging(0.942) TCGA-LB-A8F3-01 4 85678099 85678099 G - WDFY3 Frame_Shift_Del p.R1802Gfs*50 0.12 TCGA-LB-A8F3-01 5 1201792 1201792 C T SLC6A19 Silent p.P9P 0.10 TCGA-LB-A8F3-01 5 56778497 56778497 T C ACTBL2 Missense_Mutation p.N13S 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.548) TCGA-LB-A8F3-01 5 89979973 89979973 C T GPR98 Missense_Mutation p.L2079F 0.13 probably_damaging(0.992) TCGA-LB-A8F3-01 7 110763403 110763403 T C LRRN3 Missense_Mutation p.I192T 0.16 deleterious(0) possibly_damaging(0.825) TCGA-LB-A8F3-01 7 143956698 143956698 G T OR2A7 Silent p.I8I 0.11 TCGA-LB-A8F3-01 7 21469543 21469544 - T SP4 Frame_Shift_Ins p.T255Nfs*6 0.14 TCGA-LB-A8F3-01 7 72277910 72277910 C T TYW1B Missense_Mutation p.V158M 0.05 deleterious(0) benign(0.404) TCGA-LB-A8F3-01 7 73279489 73279489 G A WBSCR28 Missense_Mutation p.G80E 0.11 deleterious(0.01) probably_damaging(0.988) TCGA-LB-A8F3-01 8 39626997 39626997 G A ADAM2 Missense_Mutation p.R376C 0.05 deleterious(0) possibly_damaging(0.676) TCGA-LB-A8F3-01 9 140082360 140082360 G C ANAPC2 Missense_Mutation p.P105A 0.13 tolerated(0.78) benign(0.004) TCGA-LB-A8F3-01 X 123176477 123176477 G A STAG2 Missense_Mutation p.M148I 0.07 deleterious(0) probably_damaging(0.915) TCGA-LB-A8F3-01 X 19955570 19955570 G T CXorf23 Intron 0.12 TCGA-LB-A8F3-01 X 22292216 22292216 G A ZNF645 Missense_Mutation p.E370K 0.07 deleterious(0.02) possibly_damaging(0.501) TCGA-LB-A8F3-01 X 69607059 69607059 A G KIF4A Missense_Mutation p.K715R 0.23 tolerated(0.14) benign(0.033) TCGA-LB-A8F3-01 X 99662436 99662436 C T PCDH19 Missense_Mutation p.R387H 0.10 deleterious(0.02) probably_damaging(0.961) TCGA-LB-A9Q5-01 11 124761327 124761327 G A ROBO4 Missense_Mutation p.R606C 0.07 tolerated(0.19) benign(0.003) TCGA-LB-A9Q5-01 15 89074164 89074164 C T DET1 Missense_Mutation p.R269H 0.10 deleterious(0.01) possibly_damaging(0.509) TCGA-LB-A9Q5-01 16 2160250 2160250 C T PKD1 Missense_Mutation p.G1640S 0.11 benign(0.053) TCGA-LB-A9Q5-01 16 74729301 74729301 C G MLKL Missense_Mutation p.E119Q 0.03 tolerated(0.07) benign(0.265) TCGA-LB-A9Q5-01 17 28511942 28511942 G A NSRP1 Silent p.T309T 0.05 TCGA-LB-A9Q5-01 17 38859689 38859689 C A KRT24 Missense_Mutation p.G86V 0.03 tolerated(0.06) unknown(0) TCGA-LB-A9Q5-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.05 TCGA-LB-A9Q5-01 18 48593400 48593400 G A SMAD4 Missense_Mutation p.G384D 0.06 deleterious(0) probably_damaging(1) TCGA-LB-A9Q5-01 19 56466067 56466067 G A NLRP8 Missense_Mutation p.G215R 0.04 deleterious(0) probably_damaging(1) TCGA-LB-A9Q5-01 1 109808777 109808777 C T CELSR2 Missense_Mutation p.R1988C 0.04 deleterious(0) probably_damaging(0.972) TCGA-LB-A9Q5-01 1 113244218 113244218 G A RHOC Missense_Mutation p.R176W 0.05 deleterious(0) probably_damaging(0.967) TCGA-LB-A9Q5-01 1 13942453 13942453 C T PDPN 3'UTR 0.04 TCGA-LB-A9Q5-01 1 158435396 158435396 C T OR10K1 Silent p.L15L 0.05 TCGA-LB-A9Q5-01 1 247150257 247150257 G A ZNF695 3'UTR 0.06 TCGA-LB-A9Q5-01 1 248309257 248309257 C T OR2M5 Nonsense_Mutation p.Q270* 0.02 TCGA-LB-A9Q5-01 20 58318299 58318299 G A PHACTR3 Missense_Mutation p.E86K 0.04 deleterious(0) probably_damaging(0.994) TCGA-LB-A9Q5-01 2 20870689 20870689 C T GDF7 Missense_Mutation p.A286V 0.08 tolerated(0.15) benign(0.239) TCGA-LB-A9Q5-01 2 27602967 27602967 G T ZNF513 Missense_Mutation p.D68E 0.04 tolerated(0.32) benign(0.417) TCGA-LB-A9Q5-01 2 97426885 97426885 G A CNNM4 Missense_Mutation p.R50K 0.05 deleterious(0) probably_damaging(0.996) TCGA-LB-A9Q5-01 3 38601865 38601865 C T SCN5A Missense_Mutation p.V1340I 0.04 deleterious(0) probably_damaging(0.996) TCGA-LB-A9Q5-01 3 48667366 48667366 C T SLC26A6 Missense_Mutation p.D490N 0.06 deleterious(0) probably_damaging(0.963) TCGA-LB-A9Q5-01 6 35088799 35088799 C T TCP11 Missense_Mutation p.R214Q 0.04 deleterious(0.04) benign(0) TCGA-LB-A9Q5-01 7 48494876 48494876 T C ABCA13 Missense_Mutation p.F4270L 0.09 probably_damaging(0.987) TCGA-LB-A9Q5-01 8 144895217 144895217 G A SCRIB Silent p.L209L 0.12 TCGA-LB-A9Q5-01 8 30705431 30705431 C T TEX15 Missense_Mutation p.G368E 0.03 tolerated(1) benign(0.003) TCGA-LB-A9Q5-01 8 80954871 80954871 T G TPD52 Missense_Mutation p.K180T 0.04 deleterious(0.02) possibly_damaging(0.883) TCGA-LB-A9Q5-01 9 101911492 101911492 G A TGFBR1 Missense_Mutation p.E473K 0.05 deleterious(0) possibly_damaging(0.707) TCGA-M8-A5N4-01 10 98763971 98763971 G A SLIT1 Missense_Mutation p.T1240M 0.04 tolerated(0.3) benign(0.055) TCGA-M8-A5N4-01 11 129753985 129753985 C T NFRKB Missense_Mutation p.E291K 0.14 tolerated(0.19) unknown(0) TCGA-M8-A5N4-01 11 55563781 55563781 C T OR5D14 Silent p.I250I 0.05 TCGA-M8-A5N4-01 11 6592936 6592936 C T DNHD1 Missense_Mutation p.A4661V 0.11 probably_damaging(1) TCGA-M8-A5N4-01 12 130648005 130648005 G A FZD10 Missense_Mutation p.R173Q 0.09 tolerated(0.53) benign(0.014) TCGA-M8-A5N4-01 12 21968727 21968727 G A ABCC9 Silent p.H1331H 0.08 TCGA-M8-A5N4-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.09 deleterious(0) benign(0.361) TCGA-M8-A5N4-01 14 23346384 23346384 G T LRP10 Missense_Mutation p.G597V 0.19 tolerated(0.17) benign(0.008) TCGA-M8-A5N4-01 15 43044234 43044234 C T TTBK2 Silent p.S1070S 0.20 TCGA-M8-A5N4-01 16 29990391 29990391 G C TAOK2 Missense_Mutation p.R150T 0.21 deleterious(0) probably_damaging(1) TCGA-M8-A5N4-01 16 49525083 49525083 C T ZNF423 3'UTR 0.09 TCGA-M8-A5N4-01 16 72110604 72110604 C T HPR Missense_Mutation p.S224F 0.15 deleterious(0) probably_damaging(0.997) TCGA-M8-A5N4-01 17 20224876 20224876 G A AC004702.2 Intron 0.23 TCGA-M8-A5N4-01 17 34062239 34062239 G A RASL10B Silent p.A12A 0.18 TCGA-M8-A5N4-01 17 39471934 39471934 C T KRTAP17-1 5'UTR 0.14 TCGA-M8-A5N4-01 17 64092738 64092738 G A CEP112 Nonsense_Mutation p.R219* 0.07 TCGA-M8-A5N4-01 17 7577118 7577118 C A TP53 Missense_Mutation p.V274F 0.20 deleterious(0.03) benign(0.275) TCGA-M8-A5N4-01 19 38631993 38631993 G A SIPA1L3 Missense_Mutation p.G1105S 0.07 tolerated(0.12) benign(0.012) TCGA-M8-A5N4-01 19 6974579 6974579 C T EMR4P RNA 0.16 TCGA-M8-A5N4-01 19 9325150 9325150 G A OR7D4 Missense_Mutation p.R122W 0.16 deleterious(0.03) benign(0.003) TCGA-M8-A5N4-01 1 12854372 12854372 T C PRAMEF1 Missense_Mutation p.L199S 0.06 deleterious(0) probably_damaging(0.999) TCGA-M8-A5N4-01 1 158517227 158517227 G A OR6Y1 Silent p.Y223Y 0.14 TCGA-M8-A5N4-01 1 16264319 16264319 G A SPEN Missense_Mutation p.V3508M 0.18 possibly_damaging(0.47) TCGA-M8-A5N4-01 1 228475547 228475547 C T OBSCN Missense_Mutation p.R3662C 0.08 benign(0.11) TCGA-M8-A5N4-01 1 28907105 28907105 C T TRNAU1AP 3'Flank 0.10 TCGA-M8-A5N4-01 20 43400046 43400046 G A RIMS4 Missense_Mutation p.R37W 0.04 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-M8-A5N4-01 20 6078257 6078257 G C FERMT1 Missense_Mutation p.Q291E 0.17 deleterious(0) probably_damaging(0.999) TCGA-M8-A5N4-01 22 32756681 32756681 C T RFPL3 Silent p.S272S 0.17 TCGA-M8-A5N4-01 2 187698677 187698677 C T ZSWIM2 Missense_Mutation p.R275H 0.10 deleterious(0) probably_damaging(0.999) TCGA-M8-A5N4-01 2 234433205 234433205 T - USP40 Frame_Shift_Del p.D616Vfs*3 0.08 TCGA-M8-A5N4-01 2 23977530 23977530 C T ATAD2B Missense_Mutation p.R1398H 0.06 tolerated(1) benign(0) TCGA-M8-A5N4-01 2 56419682 56419682 G A CCDC85A Missense_Mutation p.R116Q 0.13 deleterious(0.02) probably_damaging(0.997) TCGA-M8-A5N4-01 4 107168383 107168383 G A TBCK Missense_Mutation p.P282S 0.10 tolerated(0.19) benign(0.001) TCGA-M8-A5N4-01 4 109571777 109571777 G C OSTC 5'Flank 0.06 TCGA-M8-A5N4-01 4 177100716 177100716 C T WDR17 Missense_Mutation p.L1319F 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-M8-A5N4-01 4 186423425 186423425 G A PDLIM3 3'UTR 0.17 TCGA-M8-A5N4-01 4 47682234 47682234 G A CORIN Silent p.D352D 0.16 TCGA-M8-A5N4-01 5 135692812 135692812 G A TRPC7 Silent p.N88N 0.15 TCGA-M8-A5N4-01 5 140559743 140559743 G A PCDHB8 Missense_Mutation p.V710M 0.08 deleterious_low_confidence(0) benign(0.331) TCGA-M8-A5N4-01 5 228334 228335 - T SDHA Frame_Shift_Ins p.A221Cfs*100 0.08 TCGA-M8-A5N4-01 5 33546294 33546294 C G ADAMTS12 Missense_Mutation p.C1439S 0.16 deleterious(0) probably_damaging(0.942) TCGA-M8-A5N4-01 6 32093957 32093957 C T ATF6B Missense_Mutation p.D139N 0.08 tolerated(1) benign(0.097) TCGA-M8-A5N4-01 6 72806839 72806839 G C RIMS1 Missense_Mutation p.G145R 0.13 deleterious(0) probably_damaging(0.999) TCGA-M8-A5N4-01 7 102147169 102147169 C T RASA4B Missense_Mutation p.R134Q 0.22 tolerated(0.64) possibly_damaging(0.559) TCGA-M8-A5N4-01 7 123593723 123593723 C T SPAM1 Silent p.C33C 0.18 TCGA-M8-A5N4-01 7 135392895 135392895 C T SLC13A4 Missense_Mutation p.R111H 0.19 deleterious(0.01) probably_damaging(0.971) TCGA-M8-A5N4-01 7 5330780 5330780 C T SLC29A4 Silent p.S109S 0.11 TCGA-M8-A5N4-01 7 8258081 8258081 G A ICA1 Missense_Mutation p.R145W 0.16 deleterious(0) probably_damaging(1) TCGA-M8-A5N4-01 8 26513300 26513300 T - DPYSL2 3'UTR 0.29 TCGA-M8-A5N4-01 9 21974764 21974784 GGCCGCGGCCGTGGCCAGCCA - CDKN2A In_Frame_Del p.W15_A21del 0.15 TCGA-M8-A5N4-01 9 21974790 21974790 C T CDKN2A Missense_Mutation p.A13T 0.21 deleterious(0.01) possibly_damaging(0.651) TCGA-M8-A5N4-01 9 37708488 37708488 G A FRMPD1 Missense_Mutation p.D118N 0.18 tolerated(0.28) benign(0.021) TCGA-M8-A5N4-01 9 74865634 74865634 A T GDA Intron 0.09 TCGA-M8-A5N4-01 9 84605871 84605871 G A SPATA31D1 Silent p.S162S 0.17 TCGA-M8-A5N4-01 X 69478725 69478725 C A P2RY4 Silent p.V250V 0.14 TCGA-OE-A75W-01 10 106118265 106118265 G A CCDC147 Missense_Mutation p.R59H 0.08 tolerated(0.09) possibly_damaging(0.448) TCGA-OE-A75W-01 10 117154220 117154220 G A ATRNL1 Missense_Mutation p.C1076Y 0.30 deleterious(0) probably_damaging(0.998) TCGA-OE-A75W-01 10 55570351 55570351 C A PCDH15 Missense_Mutation p.V1490F 0.21 benign(0.355) TCGA-OE-A75W-01 10 96802653 96802653 G T CYP2C8 Silent p.I381I 0.03 TCGA-OE-A75W-01 11 101833633 101833633 A T KIAA1377 Missense_Mutation p.I623F 0.27 deleterious(0.04) possibly_damaging(0.889) TCGA-OE-A75W-01 11 125548083 125548083 A G ACRV1 Silent p.A54A 0.26 TCGA-OE-A75W-01 11 473950 473950 G A PTDSS2 Missense_Mutation p.D114N 0.25 deleterious(0.02) benign(0.391) TCGA-OE-A75W-01 11 4976514 4976514 C T OR51A2 Missense_Mutation p.A144T 0.06 tolerated(0.12) benign(0.012) TCGA-OE-A75W-01 11 71194032 71194032 C T NADSYN1 Missense_Mutation p.R430W 0.09 deleterious(0) probably_damaging(0.982) TCGA-OE-A75W-01 11 86158183 86158183 C T ME3 Missense_Mutation p.R435H 0.34 tolerated(0.07) benign(0.027) TCGA-OE-A75W-01 12 114839668 114839668 C T TBX5 Missense_Mutation p.E69K 0.24 tolerated(0.21) benign(0.009) TCGA-OE-A75W-01 12 121698198 121698198 G A CAMKK2 Intron 0.28 TCGA-OE-A75W-01 12 12300383 12300383 A G LRP6 Missense_Mutation p.I1105T 0.26 tolerated(0.64) benign(0.083) TCGA-OE-A75W-01 12 25308303 25308306 AATA - CASC1 Frame_Shift_Del p.L80* 0.27 TCGA-OE-A75W-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.31 deleterious(0) benign(0.361) TCGA-OE-A75W-01 12 45169879 45169879 T A NELL2 Missense_Mutation p.T323S 0.23 tolerated(0.61) benign(0.026) TCGA-OE-A75W-01 12 45814920 45814920 C T ANO6 Missense_Mutation p.P783S 0.30 tolerated(0.44) benign(0.063) TCGA-OE-A75W-01 12 59267907 59267907 T A LRIG3 Silent p.L1015L 0.04 TCGA-OE-A75W-01 13 20221309 20221309 C G MPHOSPH8 Missense_Mutation p.Q366E 0.25 deleterious_low_confidence(0) benign(0.188) TCGA-OE-A75W-01 13 36886315 36886315 A G SPG20 Missense_Mutation p.V567A 0.22 tolerated(0.07) possibly_damaging(0.846) TCGA-OE-A75W-01 15 23006789 23006789 C T NIPA2 Missense_Mutation p.R172H 0.50 deleterious(0.05) benign(0.051) TCGA-OE-A75W-01 15 41192857 41192857 G A VPS18 Nonsense_Mutation p.W614* 0.04 TCGA-OE-A75W-01 15 75116728 75116728 C A LMAN1L Missense_Mutation p.P454T 0.26 tolerated(0.1) benign(0.008) TCGA-OE-A75W-01 16 11374777 11374777 A G PRM1 3'UTR 0.30 TCGA-OE-A75W-01 16 46781922 46781922 G A MYLK3 Missense_Mutation p.R62W 0.27 deleterious(0) benign(0.386) TCGA-OE-A75W-01 16 57714440 57714440 G A GPR97 Silent p.T264T 0.25 TCGA-OE-A75W-01 16 7382944 7382944 C T RBFOX1 5'UTR 0.26 TCGA-OE-A75W-01 17 29665118 29665118 T G NF1 Silent p.S2260S 0.08 TCGA-OE-A75W-01 17 33902992 33902993 AG - PEX12 Frame_Shift_Del p.L297Tfs*12 0.17 TCGA-OE-A75W-01 17 38787103 38787103 C T SMARCE1 Missense_Mutation p.R297H 0.25 tolerated(0.07) benign(0.369) TCGA-OE-A75W-01 17 39274042 39274042 G T KRTAP4-11 Missense_Mutation p.R176S 0.35 deleterious(0) unknown(0) TCGA-OE-A75W-01 17 40925889 40925889 G T VPS25 Missense_Mutation p.K64N 0.25 tolerated(0.16) benign(0.063) TCGA-OE-A75W-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.41 TCGA-OE-A75W-01 18 14763729 14763729 G A ANKRD30B Missense_Mutation p.E289K 0.27 deleterious(0.04) probably_damaging(0.974) TCGA-OE-A75W-01 18 14763906 14763906 G A ANKRD30B Missense_Mutation p.E348K 0.33 tolerated(0.11) possibly_damaging(0.569) TCGA-OE-A75W-01 18 73139532 73139532 C T SMIM21 5'UTR 0.35 TCGA-OE-A75W-01 19 14266197 14266197 C T LPHN1 Missense_Mutation p.V1095I 0.34 tolerated(1) benign(0.004) TCGA-OE-A75W-01 19 15271827 15271827 C T NOTCH3 Silent p.P2204P 0.16 TCGA-OE-A75W-01 19 36303061 36303061 G A PRODH2 Missense_Mutation p.T238M 0.04 deleterious(0) probably_damaging(0.987) TCGA-OE-A75W-01 19 38682812 38682812 C T SIPA1L3 Silent p.V1486V 0.19 TCGA-OE-A75W-01 19 39075614 39075614 G A RYR1 Missense_Mutation p.R4893Q 0.12 benign(0.133) TCGA-OE-A75W-01 19 43358460 43358460 A G PSG10P RNA 0.09 TCGA-OE-A75W-01 19 4652052 4652052 G A TNFAIP8L1 Silent p.Q57Q 0.23 TCGA-OE-A75W-01 19 50969494 50969494 G C MYBPC2 3'UTR 0.21 TCGA-OE-A75W-01 19 51728379 51728379 C T CD33 Missense_Mutation p.P2L 0.10 deleterious_low_confidence(0) benign(0) TCGA-OE-A75W-01 19 53473659 53473659 C T ZNF702P RNA 0.11 TCGA-OE-A75W-01 19 56243922 56243922 G A NLRP9 Silent p.G425G 0.28 TCGA-OE-A75W-01 19 57036821 57036821 A T ZNF471 Missense_Mutation p.K462M 0.06 deleterious(0.03) possibly_damaging(0.771) TCGA-OE-A75W-01 1 107961223 107961223 T A NTNG1 Intron 0.31 TCGA-OE-A75W-01 1 151680404 151680404 G A CELF3 Missense_Mutation p.S165L 0.23 deleterious(0) probably_damaging(0.948) TCGA-OE-A75W-01 1 153271680 153271680 C A PGLYRP3 Silent p.V252V 0.32 TCGA-OE-A75W-01 1 159410194 159410194 G T OR10J1 Missense_Mutation p.V216L 0.28 deleterious(0.01) possibly_damaging(0.718) TCGA-OE-A75W-01 1 186120449 186120449 G A HMCN1 Missense_Mutation p.R4909H 0.26 benign(0) TCGA-OE-A75W-01 1 228285699 228285699 C T ARF1 Silent p.L177L 0.08 TCGA-OE-A75W-01 1 23420152 23420159 ATTCAAGT - LUZP1 Frame_Shift_Del p.Y199* 0.33 TCGA-OE-A75W-01 1 46491369 46491369 C T MAST2 Silent p.L601L 0.45 TCGA-OE-A75W-01 1 52927392 52927392 C A ZCCHC11 Missense_Mutation p.R1040I 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-OE-A75W-01 20 13514683 13514683 C T TASP1 Missense_Mutation p.G261R 0.07 deleterious(0) probably_damaging(1) TCGA-OE-A75W-01 20 32232202 32232202 A T CBFA2T2 Missense_Mutation p.N522I 0.25 deleterious(0) probably_damaging(0.99) TCGA-OE-A75W-01 21 47581948 47581948 G A SPATC1L Missense_Mutation p.A193V 0.39 deleterious(0.01) benign(0.108) TCGA-OE-A75W-01 22 19318828 19318828 G A HIRA 3'UTR 0.33 TCGA-OE-A75W-01 22 27003917 27003917 C T CRYBB1 Missense_Mutation p.R123H 0.19 deleterious(0.01) possibly_damaging(0.775) TCGA-OE-A75W-01 22 41625557 41625557 G A L3MBTL2 Silent p.P634P 0.33 TCGA-OE-A75W-01 22 50303671 50303671 C T ALG12 Missense_Mutation p.A179T 0.20 benign(0.379) TCGA-OE-A75W-01 2 179597812 179597812 C T TTN Missense_Mutation p.R5364H 0.22 TCGA-OE-A75W-01 2 179641336 179641336 C T TTN Missense_Mutation p.R1752H 0.33 TCGA-OE-A75W-01 2 1982980 1982980 C T MYT1L Missense_Mutation p.D37N 0.35 tolerated(0.14) unknown(0) TCGA-OE-A75W-01 2 219029099 219029099 C T CXCR1 Missense_Mutation p.R279H 0.27 tolerated(0.29) benign(0.035) TCGA-OE-A75W-01 2 88125277 88125277 G T RGPD2 5'UTR 0.34 TCGA-OE-A75W-01 2 97007560 97007560 G A NCAPH Missense_Mutation p.R67Q 0.22 deleterious(0) probably_damaging(1) TCGA-OE-A75W-01 3 134278028 134278028 G T CEP63 Missense_Mutation p.K570N 0.29 tolerated(0.16) benign(0.002) TCGA-OE-A75W-01 3 134278030 134278030 C T CEP63 Missense_Mutation p.T571I 0.29 tolerated(0.22) benign(0) TCGA-OE-A75W-01 3 137483748 137483748 G A SOX14 Missense_Mutation p.R41H 0.06 deleterious(0) probably_damaging(0.994) TCGA-OE-A75W-01 3 140692616 140692616 G A SLC25A36 Missense_Mutation p.D171N 0.28 tolerated(0.08) benign(0.213) TCGA-OE-A75W-01 3 168845679 168845679 C T MECOM Silent p.T137T 0.27 TCGA-OE-A75W-01 3 38592068 38592068 G A SCN5A Missense_Mutation p.A1932V 0.10 tolerated(0.34) benign(0.002) TCGA-OE-A75W-01 3 52523640 52523640 C T NISCH Silent p.V1134V 0.13 TCGA-OE-A75W-01 3 57582876 57582876 T G ARF4 5'UTR 0.30 TCGA-OE-A75W-01 4 154318479 154318479 G T MND1 Nonsense_Mutation p.E154* 0.18 TCGA-OE-A75W-01 4 162307378 162307378 A T FSTL5 Missense_Mutation p.F689I 0.34 tolerated(0.37) benign(0.003) TCGA-OE-A75W-01 4 2952779 2952780 - A NOP14 Intron 0.26 TCGA-OE-A75W-01 4 3944897 3944897 A G FAM86EP RNA 0.19 TCGA-OE-A75W-01 4 954958 954958 A G DGKQ Missense_Mutation p.I869T 0.17 tolerated(0.05) probably_damaging(1) TCGA-OE-A75W-01 5 137518869 137518869 C T KIF20A Nonsense_Mutation p.R282* 0.23 TCGA-OE-A75W-01 5 140558339 140558339 G A PCDHB8 Missense_Mutation p.E242K 0.14 deleterious_low_confidence(0.04) benign(0.018) TCGA-OE-A75W-01 5 167627098 167627098 C T TENM2 Missense_Mutation p.A1131V 0.30 tolerated(0.85) probably_damaging(0.999) TCGA-OE-A75W-01 5 176831274 176831274 G A F12 Missense_Mutation p.P314L 0.25 tolerated(0.34) benign(0) TCGA-OE-A75W-01 5 38370412 38370412 A T EGFLAM Missense_Mutation p.K187M 0.27 tolerated_low_confidence(0.08) benign(0.024) TCGA-OE-A75W-01 5 63509712 63509712 C T RNF180 Nonsense_Mutation p.R187* 0.32 TCGA-OE-A75W-01 5 78586970 78586970 C T JMY Nonsense_Mutation p.R459* 0.13 TCGA-OE-A75W-01 6 102516276 102516276 C T GRIK2 Missense_Mutation p.R873C 0.33 deleterious(0.01) possibly_damaging(0.816) TCGA-OE-A75W-01 6 24580108 24580108 C T KIAA0319 Silent p.T450T 0.16 TCGA-OE-A75W-01 6 39881079 39881079 C G MOCS1 Missense_Mutation p.E247Q 0.25 deleterious(0) probably_damaging(1) TCGA-OE-A75W-01 6 42832490 42832490 C T GLTSCR1L Missense_Mutation p.A849V 0.30 tolerated(0.15) benign(0.002) TCGA-OE-A75W-01 6 7246974 7246974 G A RREB1 Missense_Mutation p.E1431K 0.21 deleterious(0.02) benign(0.167) TCGA-OE-A75W-01 7 126410092 126410092 G A GRM8 Missense_Mutation p.S395F 0.34 deleterious(0.03) benign(0.21) TCGA-OE-A75W-01 7 149523658 149523658 G C SSPO RNA 0.29 TCGA-OE-A75W-01 7 4089014 4089014 A G SDK1 Silent p.E879E 0.24 TCGA-OE-A75W-01 7 50595897 50595897 G C DDC Missense_Mutation p.R218G 0.25 deleterious(0) benign(0.032) TCGA-OE-A75W-01 8 134233083 134233083 C T WISP1 Silent p.F203F 0.24 TCGA-OE-A75W-01 8 16963071 16963071 G A MICU3 Missense_Mutation p.R412H 0.38 tolerated(0.15) benign(0.013) TCGA-OE-A75W-01 9 100132333 100132333 A G CCDC180 Missense_Mutation p.E1484G 0.30 tolerated(0.3) benign(0) TCGA-OE-A75W-01 9 127644234 127644234 C T GOLGA1 Splice_Site p.X656_splice 0.11 TCGA-OE-A75W-01 9 139412298 139412298 G A NOTCH1 Silent p.C449C 0.25 TCGA-OE-A75W-01 9 21971111 21971111 G A CDKN2A Missense_Mutation p.H83Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-OE-A75W-01 X 153187163 153187163 C T ARHGAP4 Missense_Mutation p.R56H 0.57 deleterious(0) probably_damaging(0.996) TCGA-PZ-A5RE-01 10 124389416 124389416 C A DMBT1 Missense_Mutation p.S1781Y 0.26 tolerated(1) probably_damaging(0.991) TCGA-PZ-A5RE-01 10 49392828 49392828 G A FRMPD2 Missense_Mutation p.T819M 0.23 tolerated(0.09) benign(0.013) TCGA-PZ-A5RE-01 11 17552955 17552956 - G USH1C Frame_Shift_Ins p.R80Pfs*69 0.23 TCGA-PZ-A5RE-01 12 108045467 108045467 A C BTBD11 Missense_Mutation p.K1003T 0.56 tolerated(0.44) probably_damaging(0.957) TCGA-PZ-A5RE-01 12 25380272 25380272 C T KRAS Silent p.E62E 0.43 TCGA-PZ-A5RE-01 12 25380275 25380275 T G KRAS Missense_Mutation p.Q61H 0.42 deleterious(0) benign(0.371) TCGA-PZ-A5RE-01 14 102349889 102349890 - T PPP2R5C Frame_Shift_Ins p.F239Ifs*3 0.25 TCGA-PZ-A5RE-01 16 67298340 67298340 G A SLC9A5 Missense_Mutation p.R643Q 0.25 tolerated(0.07) benign(0.003) TCGA-PZ-A5RE-01 17 72277972 72277972 G A DNAI2 Missense_Mutation p.V6M 0.26 deleterious(0.04) benign(0.326) TCGA-PZ-A5RE-01 17 7578268 7578268 A T TP53 Missense_Mutation p.L194H 0.27 deleterious(0) probably_damaging(1) TCGA-PZ-A5RE-01 18 48604785 48604785 T C SMAD4 Missense_Mutation p.L536P 0.31 deleterious(0) probably_damaging(1) TCGA-PZ-A5RE-01 19 18545046 18545046 T C SSBP4 Missense_Mutation p.M383T 0.21 deleterious_low_confidence(0) benign(0.359) TCGA-PZ-A5RE-01 19 8808041 8808041 G A ACTL9 Silent p.N337N 0.26 TCGA-PZ-A5RE-01 1 167666774 167666774 G T RCSD1 Missense_Mutation p.A305S 0.29 tolerated(0.07) possibly_damaging(0.755) TCGA-PZ-A5RE-01 1 17593247 17593247 G A PADI3 Missense_Mutation p.G148S 0.25 deleterious(0.02) benign(0.067) TCGA-PZ-A5RE-01 1 66102496 66102496 G A LEPR Missense_Mutation p.R1099K 0.27 tolerated(0.97) benign(0.071) TCGA-PZ-A5RE-01 20 36014538 36014538 C T SRC Missense_Mutation p.S104F 0.25 deleterious(0) probably_damaging(0.945) TCGA-PZ-A5RE-01 2 196674543 196674543 G A DNAH7 Missense_Mutation p.R3272W 0.29 deleterious(0) probably_damaging(0.998) TCGA-PZ-A5RE-01 3 47048744 47048744 C T NBEAL2 Missense_Mutation p.A2413V 0.16 tolerated(0.17) benign(0.029) TCGA-PZ-A5RE-01 4 155219098 155219098 G A DCHS2 Missense_Mutation p.T1668M 0.30 deleterious(0.01) benign(0.075) TCGA-PZ-A5RE-01 4 38829687 38829687 C T TLR6 Missense_Mutation p.V470I 0.21 tolerated(0.48) benign(0.003) TCGA-PZ-A5RE-01 5 131724619 131724622 GACC T SLC22A5 In_Frame_Del p.D320del 0.14 TCGA-PZ-A5RE-01 7 20744419 20744419 C A ABCB5 Missense_Mutation p.Q804K 0.30 tolerated(0.08) benign(0.381) TCGA-PZ-A5RE-01 7 87138667 87138667 C A ABCB1 Missense_Mutation p.R1138L 0.36 deleterious(0) benign(0.096) TCGA-PZ-A5RE-01 7 99564799 99564799 C T AZGP1 Missense_Mutation p.A242T 0.33 tolerated(0.71) benign(0.032) TCGA-PZ-A5RE-01 8 117950573 117950573 C T AARD Missense_Mutation p.R31C 0.25 deleterious(0.01) benign(0.266) TCGA-PZ-A5RE-01 8 1581003 1581003 C T DLGAP2 Missense_Mutation p.A454V 0.28 tolerated(0.86) benign(0.283) TCGA-PZ-A5RE-01 8 41513269 41513269 G A ANK1 Missense_Mutation p.H1891Y 0.35 deleterious_low_confidence(0.01) benign(0.064) TCGA-PZ-A5RE-01 8 41522591 41522591 C T ANK1 Intron 0.29 TCGA-PZ-A5RE-01 8 53568876 53568877 - T RB1CC1 Frame_Shift_Ins p.N1171Kfs*8 0.18 TCGA-PZ-A5RE-01 8 92983007 92983007 C T RUNX1T1 Missense_Mutation p.R484Q 0.22 tolerated(0.51) benign(0.372) TCGA-PZ-A5RE-01 X 140993257 140993257 C T MAGEC1 Nonsense_Mutation p.Q23* 0.28 TCGA-PZ-A5RE-01 X 152808544 152808544 C T ATP2B3 Silent p.A278A 0.28 TCGA-PZ-A5RE-01 X 48923087 48923087 C A CCDC120 Missense_Mutation p.P262Q 0.23 tolerated(0.12) probably_damaging(0.961) TCGA-PZ-A5RE-01 X 50378665 50378665 G A SHROOM4 Silent p.D136D 0.30 TCGA-Q3-A5QY-01 2 170814986 170814986 C T UBR3 Missense_Mutation p.A1195V 0.04 deleterious(0.01) probably_damaging(0.991) TCGA-Q3-AA2A-01 10 61028449 61028449 G A FAM13C Missense_Mutation p.P269L 0.21 tolerated(0.08) benign(0.145) TCGA-Q3-AA2A-01 10 93389892 93389892 T C PPP1R3C Missense_Mutation p.N249S 0.27 deleterious(0) probably_damaging(1) TCGA-Q3-AA2A-01 11 104774153 104774153 C A CASP12 5'Flank 0.18 TCGA-Q3-AA2A-01 11 63257751 63257751 G A HRASLS5 Missense_Mutation p.P78L 0.29 deleterious_low_confidence(0.02) benign(0.027) TCGA-Q3-AA2A-01 12 107937864 107937864 G A BTBD11 Missense_Mutation p.E480K 0.17 deleterious(0) probably_damaging(0.993) TCGA-Q3-AA2A-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.30 deleterious(0) possibly_damaging(0.479) TCGA-Q3-AA2A-01 13 114265370 114265370 C T TFDP1 Silent p.P24P 0.23 TCGA-Q3-AA2A-01 13 25744404 25744404 C T AMER2 Missense_Mutation p.E452K 0.21 tolerated(0.13) benign(0.002) TCGA-Q3-AA2A-01 13 29600312 29600312 C T MTUS2 Missense_Mutation p.R503C 0.20 tolerated(0.06) benign(0.172) TCGA-Q3-AA2A-01 17 7708357 7708357 G C DNAH2 Missense_Mutation p.E3089Q 0.25 probably_damaging(0.93) TCGA-Q3-AA2A-01 17 7708641 7708641 G C DNAH2 Missense_Mutation p.E3124D 0.24 probably_damaging(0.99) TCGA-Q3-AA2A-01 17 7708672 7708672 G C DNAH2 Missense_Mutation p.G3135R 0.20 probably_damaging(0.976) TCGA-Q3-AA2A-01 1 44064491 44064491 G A PTPRF Silent p.Q740Q 0.14 TCGA-Q3-AA2A-01 1 52870463 52870463 C G PRPF38A Silent p.G14G 0.12 TCGA-Q3-AA2A-01 20 36640671 36640671 C T TTI1 Silent p.V516V 0.24 TCGA-Q3-AA2A-01 22 19209057 19209057 G T CLTCL1 Missense_Mutation p.A880D 0.18 deleterious(0) possibly_damaging(0.891) TCGA-Q3-AA2A-01 2 9547660 9547660 G A ITGB1BP1 Missense_Mutation p.A150V 0.30 tolerated(0.5) probably_damaging(0.915) TCGA-Q3-AA2A-01 3 126218205 126218205 G T UROC1 Missense_Mutation p.P491T 0.20 deleterious(0) probably_damaging(1) TCGA-Q3-AA2A-01 3 74344358 74344358 C T CNTN3 Missense_Mutation p.A811T 0.26 tolerated(0.06) possibly_damaging(0.859) TCGA-Q3-AA2A-01 3 97744480 97744480 G A GABRR3 RNA 0.23 TCGA-Q3-AA2A-01 5 140603075 140603075 A G PCDHB14 5'Flank 0.30 TCGA-Q3-AA2A-01 5 140794655 140794655 A G PCDHGA10 Missense_Mutation p.D638G 0.12 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-Q3-AA2A-01 5 38881767 38881767 T C OSMR Missense_Mutation p.C107R 0.23 deleterious(0) probably_damaging(0.999) TCGA-Q3-AA2A-01 6 80635984 80635984 G T ELOVL4 Missense_Mutation p.P72H 0.22 deleterious(0) probably_damaging(0.995) TCGA-Q3-AA2A-01 7 100211247 100211247 G A MOSPD3 Silent p.E143E 0.06 TCGA-Q3-AA2A-01 7 1195155 1195155 T A ZFAND2A Silent p.P72P 0.22 TCGA-Q3-AA2A-01 7 91865794 91865794 G A KRIT1 Nonsense_Mutation p.R140* 0.30 TCGA-Q3-AA2A-01 X 115594099 115594099 G A CT83 5'UTR 0.21 TCGA-RB-A7B8-01 10 124344784 124344784 C T DMBT1 Intron 0.28 TCGA-RB-A7B8-01 10 72179709 72179709 G C EIF4EBP2 Missense_Mutation p.R62P 0.13 deleterious(0.03) probably_damaging(0.961) TCGA-RB-A7B8-01 11 1155679 1155679 C T MUC5AC Missense_Mutation p.R123C 0.12 deleterious(0) probably_damaging(0.993) TCGA-RB-A7B8-01 11 123516310 123516310 G A SCN3B Silent p.G68G 0.17 TCGA-RB-A7B8-01 11 18231323 18231323 A C RP11-113D6.10 Missense_Mutation p.S37R 0.14 tolerated(0.15) benign(0.374) TCGA-RB-A7B8-01 11 47861533 47861533 T C NUP160 Missense_Mutation p.I204V 0.15 deleterious(0.01) possibly_damaging(0.897) TCGA-RB-A7B8-01 11 63312120 63312120 G A RARRES3 Missense_Mutation p.S49N 0.02 deleterious(0.02) benign(0.029) TCGA-RB-A7B8-01 11 64120219 64120219 C T CCDC88B Silent p.H1120H 0.13 TCGA-RB-A7B8-01 12 133294121 133294121 C A PGAM5 Missense_Mutation p.T156N 0.12 deleterious(0) probably_damaging(0.999) TCGA-RB-A7B8-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.10 deleterious(0.03) benign(0.376) TCGA-RB-A7B8-01 12 31577541 31577541 C T DENND5B Silent p.E773E 0.05 TCGA-RB-A7B8-01 12 43860592 43860592 A G ADAMTS20 Silent p.G410G 0.10 TCGA-RB-A7B8-01 13 38145544 38145544 A T POSTN Missense_Mutation p.I714N 0.14 deleterious_low_confidence(0.03) benign(0.058) TCGA-RB-A7B8-01 14 106053517 106053517 G A IGHA2 Silent p.R260R 0.13 TCGA-RB-A7B8-01 14 106173748 106173748 G A IGHA1 Silent p.R273R 0.05 TCGA-RB-A7B8-01 14 91760540 91760540 G A CCDC88C Silent p.Y1363Y 0.17 TCGA-RB-A7B8-01 15 75556395 75556395 G A GOLGA6C Missense_Mutation p.V179M 0.18 deleterious(0.01) probably_damaging(0.986) TCGA-RB-A7B8-01 17 46136986 46136986 A G NFE2L1 Missense_Mutation p.K768E 0.07 tolerated(0.11) probably_damaging(0.995) TCGA-RB-A7B8-01 18 14478398 14478398 G A CXADRP3 RNA 0.10 TCGA-RB-A7B8-01 18 25572669 25572669 C T CDH2 Missense_Mutation p.A432T 0.16 tolerated(0.77) benign(0.008) TCGA-RB-A7B8-01 19 39327336 39327336 A T HNRNPL 3'UTR 0.15 TCGA-RB-A7B8-01 19 58490664 58490664 C T ZNF606 Missense_Mutation p.G462R 0.14 deleterious(0.03) probably_damaging(1) TCGA-RB-A7B8-01 1 103483426 103483426 G T COL11A1 Missense_Mutation p.P455T 0.13 probably_damaging(1) TCGA-RB-A7B8-01 1 110607330 110607330 G A ALX3 Missense_Mutation p.T158M 0.24 deleterious(0) probably_damaging(1) TCGA-RB-A7B8-01 1 152277587 152277587 C T FLG Missense_Mutation p.E3259K 0.12 unknown(0) TCGA-RB-A7B8-01 1 153958725 153958725 G C RAB13 5'UTR 0.19 TCGA-RB-A7B8-01 1 181690939 181690939 C T CACNA1E Missense_Mutation p.R668C 0.18 deleterious(0) benign(0.103) TCGA-RB-A7B8-01 1 205307704 205307704 G A KLHDC8A Nonsense_Mutation p.R260* 0.16 TCGA-RB-A7B8-01 1 44468618 44468618 A G SLC6A9 Silent p.F283F 0.15 TCGA-RB-A7B8-01 1 48694800 48694800 A T SLC5A9 Missense_Mutation p.D122V 0.12 tolerated_low_confidence(0.29) benign(0.003) TCGA-RB-A7B8-01 20 10621878 10621878 C T JAG1 Silent p.E977E 0.13 TCGA-RB-A7B8-01 20 57430245 57430245 C T GNAS Missense_Mutation p.A642V 0.18 tolerated_low_confidence(0.09) benign(0.106) TCGA-RB-A7B8-01 22 36960745 36960745 G A CACNG2 Missense_Mutation p.R209W 0.05 deleterious(0) probably_damaging(0.982) TCGA-RB-A7B8-01 2 113514269 113514269 A C CKAP2L Missense_Mutation p.L227V 0.06 tolerated(0.13) benign(0.034) TCGA-RB-A7B8-01 2 182360534 182360534 C T ITGA4 Silent p.D470D 0.14 TCGA-RB-A7B8-01 2 242695366 242695366 G A D2HGDH Missense_Mutation p.V415M 0.16 deleterious(0) probably_damaging(0.997) TCGA-RB-A7B8-01 3 141163339 141163339 C T ZBTB38 Silent p.A703A 0.07 TCGA-RB-A7B8-01 3 178952072 178952072 A T PIK3CA Missense_Mutation p.M1043L 0.33 tolerated(0.7) benign(0.001) TCGA-RB-A7B8-01 3 193366601 193366601 A C OPA1 Missense_Mutation p.K633N 0.06 deleterious(0) probably_damaging(0.98) TCGA-RB-A7B8-01 4 41984154 41984154 C T DCAF4L1 Silent p.Y115Y 0.14 TCGA-RB-A7B8-01 4 8582937 8582937 C T GPR78 Silent p.P76P 0.15 TCGA-RB-A7B8-01 5 107216677 107216677 A G FBXL17 Intron 0.12 TCGA-RB-A7B8-01 5 140257259 140257259 G A PCDHA12 Silent p.P734P 0.23 TCGA-RB-A7B8-01 5 140581503 140581503 C T PCDHB11 Missense_Mutation p.A719V 0.14 deleterious_low_confidence(0.03) benign(0.014) TCGA-RB-A7B8-01 5 22078940 22078940 C A CDH12 5'UTR 0.15 TCGA-RB-A7B8-01 6 101073182 101073182 A G ASCC3 Silent p.P1557P 0.04 TCGA-RB-A7B8-01 6 13206143 13206143 C A PHACTR1 Missense_Mutation p.P254Q 0.18 tolerated(0.21) possibly_damaging(0.554) TCGA-RB-A7B8-01 6 147680320 147680320 G A STXBP5 Silent p.T802T 0.10 TCGA-RB-A7B8-01 6 30558497 30558497 C A ABCF1 3'UTR 0.03 TCGA-RB-A7B8-01 6 3287312 3287312 C T SLC22A23 Missense_Mutation p.G443R 0.18 deleterious(0) probably_damaging(0.999) TCGA-RB-A7B8-01 6 90087442 90087442 C G RRAGD Missense_Mutation p.E284Q 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-RB-A7B8-01 7 100402884 100402884 C T EPHB4 Missense_Mutation p.G913D 0.17 tolerated(0.32) probably_damaging(0.94) TCGA-RB-A7B8-01 7 5036242 5036242 G A RNF216P1 Intron 0.25 TCGA-RB-A7B8-01 8 95523287 95523287 T A KIAA1429 Intron 0.22 TCGA-RB-A7B8-01 9 107620844 107620844 G A ABCA1 Nonsense_Mutation p.R227* 0.17 TCGA-RB-A7B8-01 9 112694261 112694261 G A PALM2-AKAP2 Missense_Mutation p.R150Q 0.18 tolerated(0.59) benign(0.05) TCGA-RB-A7B8-01 9 36665452 36665452 A G MELK Missense_Mutation p.T428A 0.17 tolerated(0.25) benign(0.003) TCGA-RB-A7B8-01 9 40772411 40772411 A - ZNF658 Frame_Shift_Del p.V955Dfs*97 0.18 TCGA-RB-A7B8-01 9 75775738 75775738 A T ANXA1 Missense_Mutation p.D135V 0.18 deleterious(0.02) possibly_damaging(0.879) TCGA-RB-A7B8-01 X 100880318 100880318 G A ARMCX3 Missense_Mutation p.V117I 0.08 tolerated(0.88) benign(0) TCGA-RB-A7B8-01 X 141291654 141291654 G T MAGEC2 Silent p.S40S 0.06 TCGA-RB-AA9M-01 10 128147750 128147750 G A C10orf90 Missense_Mutation p.R586C 0.05 deleterious(0) probably_damaging(1) TCGA-RB-AA9M-01 12 11506765 11506765 C T PRB1 Missense_Mutation p.R91Q 0.05 tolerated_low_confidence(0.33) unknown(0) TCGA-RB-AA9M-01 12 50794703 50794708 GTGTGT - LARP4 5'UTR 0.09 TCGA-RB-AA9M-01 13 25435469 25435469 C T RNF17 Silent p.L1280L 0.05 TCGA-RB-AA9M-01 13 38924038 38924038 G C UFM1 5'UTR 0.06 TCGA-RB-AA9M-01 15 41341604 41341604 C T INO80 Silent p.P819P 0.06 TCGA-RB-AA9M-01 15 48056428 48056428 A G SEMA6D Silent p.K341K 0.06 TCGA-RB-AA9M-01 16 27761391 27761391 G T KIAA0556 Missense_Mutation p.G1037V 0.06 deleterious(0) probably_damaging(0.991) TCGA-RB-AA9M-01 17 7577082 7577082 C A TP53 Nonsense_Mutation p.E286* 0.08 TCGA-RB-AA9M-01 19 58017973 58017973 G A ZNF773 Silent p.T170T 0.12 TCGA-RB-AA9M-01 1 84668430 84668430 A G PRKACB Missense_Mutation p.Y283C 0.07 deleterious(0) probably_damaging(0.992) TCGA-RB-AA9M-01 20 57767447 57767447 C T ZNF831 Missense_Mutation p.A458V 0.07 deleterious(0.01) possibly_damaging(0.87) TCGA-RB-AA9M-01 21 47856946 47856946 C T PCNT Silent p.H3017H 0.06 TCGA-RB-AA9M-01 22 24087156 24087156 C T ZNF70 Missense_Mutation p.E58K 0.07 deleterious(0.03) benign(0.006) TCGA-RB-AA9M-01 2 179430078 179430078 G A TTN Silent p.N26927N 0.06 TCGA-RB-AA9M-01 2 179483095 179483095 C T TTN Missense_Mutation p.R15697H 0.04 TCGA-RB-AA9M-01 2 210558569 210558569 G C MAP2 Missense_Mutation p.D559H 0.05 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-RB-AA9M-01 3 42703100 42703100 G A ZBTB47 Missense_Mutation p.A533T 0.08 deleterious(0) unknown(0) TCGA-RB-AA9M-01 5 156590151 156590151 C T FAM71B Silent p.A375A 0.07 TCGA-RB-AA9M-01 5 180048549 180048549 C G FLT4 Silent p.S671S 0.05 TCGA-RB-AA9M-01 5 39127879 39127879 A T FYB Missense_Mutation p.I634N 0.09 deleterious(0) possibly_damaging(0.721) TCGA-RB-AA9M-01 5 79032394 79032394 C T CMYA5 Silent p.L2602L 0.09 TCGA-RB-AA9M-01 6 102516294 102516294 C T GRIK2 Missense_Mutation p.P879S 0.07 tolerated(0.39) possibly_damaging(0.611) TCGA-RB-AA9M-01 7 100677537 100677537 C G MUC17 Missense_Mutation p.T947S 0.05 benign(0.28) TCGA-RB-AA9M-01 7 36374693 36374693 C T KIAA0895 Missense_Mutation p.R321H 0.05 deleterious(0) probably_damaging(0.993) TCGA-RB-AA9M-01 8 142228865 142228865 C T SLC45A4 Missense_Mutation p.E241K 0.07 tolerated(0.05) benign(0.052) TCGA-RB-AA9M-01 8 59484848 59484848 T C SDCBP Missense_Mutation p.V72A 0.06 tolerated(0.82) benign(0.002) TCGA-RB-AA9M-01 9 137803031 137803031 G A FCN1 Silent p.D227D 0.06 TCGA-RB-AA9M-01 9 21974760 21974760 C A CDKN2A Missense_Mutation p.G23C 0.08 deleterious(0) probably_damaging(0.996) TCGA-S4-A8RM-01 11 120348235 120348235 G T ARHGEF12 Missense_Mutation p.D1178Y 0.30 deleterious_low_confidence(0) possibly_damaging(0.75) TCGA-S4-A8RM-01 11 30033579 30033579 C T KCNA4 Missense_Mutation p.R216H 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-S4-A8RM-01 12 125396390 125396393 CCTT - UBC Frame_Shift_Del p.E642Afs*9 0.35 TCGA-S4-A8RM-01 12 25232195 25232195 C T LRMP Silent p.R14R 0.27 TCGA-S4-A8RM-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.26 deleterious(0) possibly_damaging(0.479) TCGA-S4-A8RM-01 12 49075195 49075195 T C KANSL2 Missense_Mutation p.N74S 0.30 tolerated(0.35) benign(0.007) TCGA-S4-A8RM-01 12 58021575 58021575 G T B4GALNT1 Missense_Mutation p.P404T 0.28 tolerated(0.07) benign(0.243) TCGA-S4-A8RM-01 12 7843026 7843026 G A GDF3 Silent p.F181F 0.27 TCGA-S4-A8RM-01 12 78604240 78604240 C T NAV3 Silent p.S2345S 0.30 TCGA-S4-A8RM-01 12 95397439 95397439 G T NDUFA12 Silent p.V6V 0.03 TCGA-S4-A8RM-01 12 96292480 96292480 G T CCDC38 Silent p.I133I 0.28 TCGA-S4-A8RM-01 14 103805083 103805083 G T EIF5 Missense_Mutation p.E199D 0.30 tolerated(1) benign(0.001) TCGA-S4-A8RM-01 14 73733472 73733472 C G PAPLN Missense_Mutation p.P1118A 0.29 deleterious(0.03) benign(0.017) TCGA-S4-A8RM-01 14 73958749 73958749 A T HEATR4 Intron 0.34 TCGA-S4-A8RM-01 14 89181392 89181392 G A EML5 Silent p.G445G 0.34 TCGA-S4-A8RM-01 15 28263652 28263652 G T OCA2 Missense_Mutation p.A233E 0.31 tolerated(0.28) benign(0.046) TCGA-S4-A8RM-01 16 20329591 20329591 C T GP2 Missense_Mutation p.R393Q 0.31 tolerated(0.3) benign(0.023) TCGA-S4-A8RM-01 17 3807664 3807664 G A P2RX1 Silent p.D129D 0.04 TCGA-S4-A8RM-01 17 56440757 56440757 G A RNF43 Missense_Mutation p.P154L 0.29 deleterious(0.03) probably_damaging(0.914) TCGA-S4-A8RM-01 17 7807208 7807208 G A CHD3 Missense_Mutation p.D1324N 0.49 possibly_damaging(0.539) TCGA-S4-A8RM-01 17 78321225 78321225 G A RNF213 Silent p.P3030P 0.29 TCGA-S4-A8RM-01 18 48604715 48604716 - A SMAD4 Nonsense_Mutation p.Y513* 0.36 TCGA-S4-A8RM-01 18 72347373 72347373 C T ZNF407 Silent p.A1466A 0.05 TCGA-S4-A8RM-01 19 49684660 49684660 C T TRPM4 Missense_Mutation p.A402V 0.27 deleterious(0) probably_damaging(0.988) TCGA-S4-A8RM-01 19 53344850 53344850 G - ZNF468 Frame_Shift_Del p.H233Ifs*3 0.20 TCGA-S4-A8RM-01 19 6534843 6534843 C T TNFSF9 Silent p.A177A 0.30 TCGA-S4-A8RM-01 1 152681685 152681686 - AGCTCTGGGGGCTGCTGT LCE4A In_Frame_Ins p.S45_G46insALGAAV 0.09 TCGA-S4-A8RM-01 1 228506686 228506686 C T OBSCN Missense_Mutation p.R5702W 0.16 probably_damaging(0.992) TCGA-S4-A8RM-01 20 61511162 61511162 G A DIDO1 Missense_Mutation p.A2049V 0.29 benign(0.041) TCGA-S4-A8RM-01 20 61950533 61950533 C A COL20A1 Silent p.L929L 0.26 TCGA-S4-A8RM-01 2 167133600 167133600 C T SCN9A Missense_Mutation p.V912M 0.05 deleterious(0) probably_damaging(0.999) TCGA-S4-A8RM-01 2 189904090 189904090 T G COL5A2 Missense_Mutation p.Q1278P 0.30 unknown(0) TCGA-S4-A8RM-01 2 239975284 239975284 G A HDAC4 Silent p.R1029R 0.23 TCGA-S4-A8RM-01 2 51254893 51254893 C T NRXN1 Silent p.S173S 0.32 TCGA-S4-A8RM-01 2 71211256 71211256 C T ANKRD53 Intron 0.26 TCGA-S4-A8RM-01 2 74802691 74802691 G A M1AP Silent p.S316S 0.25 TCGA-S4-A8RM-01 3 137849766 137849767 - A A4GNT Frame_Shift_Ins p.D112Rfs*15 0.29 TCGA-S4-A8RM-01 3 150460176 150460176 G C SIAH2 Missense_Mutation p.Q243E 0.34 tolerated(0.12) benign(0.074) TCGA-S4-A8RM-01 3 197687308 197687309 TG - LMLN Frame_Shift_Del p.E73Gfs*4 0.20 TCGA-S4-A8RM-01 4 68378155 68378155 C T CENPC Missense_Mutation p.R526H 0.24 tolerated(0.2) benign(0.002) TCGA-S4-A8RM-01 5 140553506 140553506 G A PCDHB7 Missense_Mutation p.V364I 0.35 tolerated_low_confidence(0.16) benign(0.062) TCGA-S4-A8RM-01 5 175528575 175528575 C G FAM153B Missense_Mutation p.L142V 0.26 tolerated_low_confidence(0.14) benign(0.188) TCGA-S4-A8RM-01 6 166844030 166844030 T G RPS6KA2 Missense_Mutation p.I506L 0.06 tolerated(0.08) benign(0.197) TCGA-S4-A8RM-01 6 31832445 31832445 C T SLC44A4 Silent p.T665T 0.23 TCGA-S4-A8RM-01 6 32008351 32008351 C T CYP21A2 Missense_Mutation p.R370W 0.12 deleterious(0) probably_damaging(0.995) TCGA-S4-A8RM-01 7 150498695 150498695 C A TMEM176A Silent p.I19I 0.18 TCGA-S4-A8RM-01 7 99454485 99454485 C A CYP3A43 Silent p.I276I 0.04 TCGA-S4-A8RM-01 8 100493941 100493941 C A VPS13B Missense_Mutation p.P1261T 0.03 deleterious(0.02) probably_damaging(0.942) TCGA-S4-A8RM-01 8 113277800 113277800 T A CSMD3 Silent p.P3176P 0.26 TCGA-S4-A8RM-01 8 23429507 23429507 G C SLC25A37 3'UTR 0.27 TCGA-S4-A8RM-01 9 18706844 18706844 C T ADAMTSL1 Silent p.S558S 0.30 TCGA-S4-A8RM-01 X 55650498 55650498 A G FOXR2 Silent p.E118E 0.59 TCGA-S4-A8RM-01 X 86887279 86887279 G A KLHL4 Missense_Mutation p.R465H 0.59 tolerated(0.06) benign(0.329) TCGA-S4-A8RO-01 10 124273964 124273964 C T HTRA1 3'UTR 0.07 TCGA-S4-A8RO-01 10 97096368 97096368 G A SORBS1 Silent p.S1183S 0.55 TCGA-S4-A8RO-01 11 101773403 101773403 T C ANGPTL5 Silent p.T163T 0.32 TCGA-S4-A8RO-01 11 47595092 47595094 CGA - KBTBD4 In_Frame_Del p.R332del 0.27 TCGA-S4-A8RO-01 11 4945382 4945382 T A OR51G1 Missense_Mutation p.Y63F 0.07 deleterious(0.04) probably_damaging(0.971) TCGA-S4-A8RO-01 11 67200423 67200423 G A RPS6KB2 Missense_Mutation p.G206D 0.26 deleterious(0) probably_damaging(0.999) TCGA-S4-A8RO-01 11 89088203 89088203 G A NOX4 Nonsense_Mutation p.R382* 0.59 TCGA-S4-A8RO-01 12 121746206 121746206 C A ANAPC5 3'UTR 0.24 TCGA-S4-A8RO-01 12 124317833 124317833 C A DNAH10 Missense_Mutation p.P1455H 0.26 probably_damaging(0.997) TCGA-S4-A8RO-01 12 25362826 25362826 T C KRAS 3'UTR 0.37 TCGA-S4-A8RO-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.31 deleterious(0) benign(0.361) TCGA-S4-A8RO-01 12 33538128 33538128 C T SYT10 Silent p.A392A 0.29 TCGA-S4-A8RO-01 12 41966704 41966704 G A PDZRN4 Missense_Mutation p.R708Q 0.25 tolerated(0.17) benign(0.019) TCGA-S4-A8RO-01 12 5153999 5153999 G A KCNA5 Missense_Mutation p.R229H 0.40 tolerated(0.09) possibly_damaging(0.563) TCGA-S4-A8RO-01 12 53069133 53069133 G A KRT1 Silent p.G593G 0.37 TCGA-S4-A8RO-01 12 90036041 90036041 T A ATP2B1 Missense_Mutation p.Q100H 0.35 tolerated(0.07) possibly_damaging(0.862) TCGA-S4-A8RO-01 13 111545291 111545291 C T ANKRD10 Intron 0.41 TCGA-S4-A8RO-01 13 19751734 19751734 G A TUBA3C Missense_Mutation p.T130M 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.772) TCGA-S4-A8RO-01 13 25671262 25671262 G A PABPC3 Missense_Mutation p.R309H 0.33 tolerated(0.08) benign(0.106) TCGA-S4-A8RO-01 13 73636195 73636195 C - KLF5 Frame_Shift_Del p.Q154Rfs*5 0.32 TCGA-S4-A8RO-01 14 20002250 20002250 T A POTEM Missense_Mutation p.K391I 0.07 deleterious(0) probably_damaging(0.991) TCGA-S4-A8RO-01 14 24624885 24624885 T C RNF31 Missense_Mutation p.V826A 0.03 tolerated(0.69) benign(0.029) TCGA-S4-A8RO-01 14 68238816 68238816 G A ZFYVE26 Missense_Mutation p.P1811L 0.43 deleterious(0) possibly_damaging(0.865) TCGA-S4-A8RO-01 14 88411975 88411975 C T GALC Missense_Mutation p.R531H 0.25 deleterious(0) probably_damaging(0.998) TCGA-S4-A8RO-01 16 1612009 1612009 G A IFT140 Missense_Mutation p.P726S 0.52 deleterious(0) probably_damaging(1) TCGA-S4-A8RO-01 16 56468701 56468701 T C NUDT21 Missense_Mutation p.H171R 0.34 tolerated(0.35) benign(0.233) TCGA-S4-A8RO-01 16 67920029 67920029 G A NRN1L Missense_Mutation p.R122Q 0.36 tolerated(0.75) benign(0.074) TCGA-S4-A8RO-01 17 39324213 39324213 C T KRTAP4-3 Missense_Mutation p.R71H 0.29 tolerated(0.08) unknown(0) TCGA-S4-A8RO-01 17 39537409 39537409 G A KRT34 Missense_Mutation p.R205C 0.40 deleterious(0.03) probably_damaging(1) TCGA-S4-A8RO-01 17 40557353 40557353 C T PTRF Silent p.S175S 0.32 TCGA-S4-A8RO-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.59 deleterious(0) probably_damaging(0.997) TCGA-S4-A8RO-01 18 28610959 28610959 G A DSC3 Silent p.L112L 0.31 TCGA-S4-A8RO-01 19 10610147 10610147 G C KEAP1 Missense_Mutation p.A188G 0.30 tolerated(0.05) probably_damaging(0.958) TCGA-S4-A8RO-01 19 17766751 17766751 G A UNC13A Silent p.P408P 0.28 TCGA-S4-A8RO-01 19 35613737 35613737 G A FXYD3 Missense_Mutation p.V113I 0.34 tolerated(0.63) benign(0.026) TCGA-S4-A8RO-01 19 36105981 36105981 G A HAUS5 Missense_Mutation p.R86H 0.32 tolerated(0.09) benign(0.041) TCGA-S4-A8RO-01 19 36231946 36231946 A C IGFLR1 Missense_Mutation p.F46V 0.35 deleterious(0.02) possibly_damaging(0.638) TCGA-S4-A8RO-01 19 4298112 4298113 - G TMIGD2 Frame_Shift_Ins p.S93Qfs*28 0.33 TCGA-S4-A8RO-01 19 43433817 43433817 C T PSG7 Silent p.T162T 0.32 TCGA-S4-A8RO-01 19 46807230 46807230 G A HIF3A Silent p.L34L 0.05 TCGA-S4-A8RO-01 19 55107243 55107243 G A LILRA1 Silent p.Q267Q 0.38 TCGA-S4-A8RO-01 1 145474036 145474036 C T ANKRD34A Silent p.R236R 0.19 TCGA-S4-A8RO-01 1 145558485 145558485 C T ANKRD35 Silent p.H142H 0.23 TCGA-S4-A8RO-01 1 145562533 145562534 - G ANKRD35 Frame_Shift_Ins p.E742Gfs*24 0.31 TCGA-S4-A8RO-01 1 240256586 240256586 G A FMN2 Missense_Mutation p.A393T 0.37 unknown(0) TCGA-S4-A8RO-01 20 37547257 37547257 C G PPP1R16B Missense_Mutation p.A551G 0.27 deleterious(0.01) possibly_damaging(0.472) TCGA-S4-A8RO-01 20 43386349 43386349 C T RIMS4 Missense_Mutation p.R139Q 0.29 deleterious_low_confidence(0) probably_damaging(0.949) TCGA-S4-A8RO-01 20 61300301 61300301 C T SLCO4A1 Silent p.I632I 0.46 TCGA-S4-A8RO-01 21 10942745 10942745 C A TPTE Missense_Mutation p.R232S 0.16 deleterious(0) possibly_damaging(0.602) TCGA-S4-A8RO-01 22 22782329 22782329 T C IGLV5-37 Silent p.D109D 0.36 TCGA-S4-A8RO-01 2 1983497 1983497 C A MYT1L Missense_Mutation p.R18L 0.24 deleterious(0) unknown(0) TCGA-S4-A8RO-01 2 219735855 219735855 G A WNT6 Missense_Mutation p.A63T 0.50 tolerated(0.53) benign(0.013) TCGA-S4-A8RO-01 2 241817502 241817502 G A AGXT Missense_Mutation p.V336I 0.52 tolerated(0.31) benign(0.008) TCGA-S4-A8RO-01 3 151075109 151075109 C T MED12L Missense_Mutation p.R889C 0.32 deleterious(0) possibly_damaging(0.65) TCGA-S4-A8RO-01 3 187447652 187447652 C T BCL6 Missense_Mutation p.A181T 0.32 tolerated(0.27) benign(0.135) TCGA-S4-A8RO-01 3 93611912 93611912 G C PROS1 Nonsense_Mutation p.Y340* 0.34 TCGA-S4-A8RO-01 3 97852022 97852022 G T OR5H1 Nonsense_Mutation p.G161* 0.09 TCGA-S4-A8RO-01 4 22436937 22436938 TT - GPR125 Frame_Shift_Del p.K480Rfs*4 0.28 TCGA-S4-A8RO-01 5 135188366 135188366 G A SLC25A48 Missense_Mutation p.G93R 0.37 tolerated(0.61) benign(0.027) TCGA-S4-A8RO-01 5 140553979 140553979 C T PCDHB7 Silent p.Y521Y 0.11 TCGA-S4-A8RO-01 5 141248263 141248263 G A PCDH1 Silent p.P258P 0.30 TCGA-S4-A8RO-01 5 2749835 2749835 C T IRX2 Missense_Mutation p.A106T 0.35 deleterious(0.03) benign(0.284) TCGA-S4-A8RO-01 5 304296 304296 G A PDCD6 Silent p.T56T 0.29 TCGA-S4-A8RO-01 5 77436974 77436974 G C AP3B1 Missense_Mutation p.S548C 0.27 deleterious(0) probably_damaging(0.976) TCGA-S4-A8RO-01 5 92929558 92929558 G A NR2F1 3'UTR 0.36 TCGA-S4-A8RO-01 6 10894138 10894138 A T SYCP2L Silent p.G39G 0.38 TCGA-S4-A8RO-01 6 165715133 165715133 G A C6orf118 Silent p.L226L 0.28 TCGA-S4-A8RO-01 6 17283114 17283114 G A RBM24 Missense_Mutation p.V83M 0.11 deleterious(0) possibly_damaging(0.844) TCGA-S4-A8RO-01 6 29761777 29761777 T C HLA-V Intron 0.24 TCGA-S4-A8RO-01 6 33377592 33377592 G C KIFC1 3'UTR 0.43 TCGA-S4-A8RO-01 6 39845988 39845988 C T DAAM2 Silent p.N437N 0.30 TCGA-S4-A8RO-01 7 27203108 27203108 G A HOXA9 3'UTR 0.34 TCGA-S4-A8RO-01 7 45222846 45222846 C T RAMP3 Silent p.T94T 0.33 TCGA-S4-A8RO-01 8 23155589 23155589 G A LOXL2 Silent p.S764S 0.33 TCGA-S4-A8RO-01 X 107909779 107909779 G A COL4A5 Missense_Mutation p.G1170S 0.45 unknown(0) TCGA-S4-A8RO-01 X 129190051 129190051 C T BCORL1 Silent p.Y1692Y 0.33 TCGA-S4-A8RO-01 X 153670920 153670920 C T GDI1 Silent p.N415N 0.54 TCGA-S4-A8RO-01 X 51150796 51150796 T C CXorf67 Missense_Mutation p.S310P 0.18 tolerated(1) benign(0) TCGA-S4-A8RO-01 X 92964906 92964906 C G FAM133A Nonsense_Mutation p.S163* 0.20 TCGA-S4-A8RP-01 10 1058521 1058521 T A GTPBP4 Silent p.I487I 0.26 TCGA-S4-A8RP-01 10 43691545 43691545 C T RASGEF1A 3'UTR 0.25 TCGA-S4-A8RP-01 12 123480179 123480179 A G PITPNM2 Missense_Mutation p.L604P 0.04 tolerated(0.12) benign(0.001) TCGA-S4-A8RP-01 12 124103244 124103244 G T DDX55 Missense_Mutation p.R398I 0.24 tolerated(0.11) benign(0) TCGA-S4-A8RP-01 12 133384600 133384600 G C GOLGA3 Missense_Mutation p.A352G 0.21 tolerated_low_confidence(0.11) possibly_damaging(0.533) TCGA-S4-A8RP-01 12 21054322 21054322 G T SLCO1B3 Missense_Mutation p.D596Y 0.24 deleterious(0) probably_damaging(1) TCGA-S4-A8RP-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.22 deleterious(0.03) benign(0.376) TCGA-S4-A8RP-01 12 55820043 55820043 A C OR6C76 Missense_Mutation p.K2N 0.06 tolerated_low_confidence(0.09) benign(0.005) TCGA-S4-A8RP-01 12 7301731 7301731 C A CLSTN3 Missense_Mutation p.Q671K 0.10 tolerated(0.26) benign(0.002) TCGA-S4-A8RP-01 15 83776476 83776476 C T TM6SF1 Missense_Mutation p.S15L 0.08 tolerated(0.41) benign(0.001) TCGA-S4-A8RP-01 15 94945245 94945245 C T MCTP2 Silent p.F694F 0.19 TCGA-S4-A8RP-01 16 4245590 4245590 G A SRL Missense_Mutation p.P192S 0.27 deleterious(0) probably_damaging(0.999) TCGA-S4-A8RP-01 17 61897290 61897290 C T FTSJ3 Missense_Mutation p.G806S 0.21 tolerated(0.25) probably_damaging(0.988) TCGA-S4-A8RP-01 17 9923135 9923135 G A GAS7 Missense_Mutation p.S88L 0.21 deleterious(0) probably_damaging(0.955) TCGA-S4-A8RP-01 18 48591891 48591891 G T SMAD4 Nonsense_Mutation p.G352* 0.35 TCGA-S4-A8RP-01 18 74154961 74154961 G A ZNF516 Missense_Mutation p.P17L 0.27 deleterious(0) probably_damaging(0.998) TCGA-S4-A8RP-01 19 291323 291323 C T PPAP2C 5'Flank 0.20 TCGA-S4-A8RP-01 19 39398260 39398260 C T NFKBIB Silent p.P310P 0.29 TCGA-S4-A8RP-01 19 51021095 51021095 G T LRRC4B Silent p.P625P 0.26 TCGA-S4-A8RP-01 1 109812124 109812124 C T CELSR2 Silent p.A2297A 0.24 TCGA-S4-A8RP-01 1 113059836 113059836 C T WNT2B Missense_Mutation p.R259C 0.23 deleterious(0) probably_damaging(0.993) TCGA-S4-A8RP-01 1 12855916 12855916 G A PRAMEF1 Missense_Mutation p.R399H 0.29 tolerated(0.31) benign(0) TCGA-S4-A8RP-01 1 151681757 151681757 A C CELF3 Missense_Mutation p.F115L 0.08 deleterious(0.01) benign(0.391) TCGA-S4-A8RP-01 1 15817919 15817919 T C CASP9 3'Flank 0.43 TCGA-S4-A8RP-01 1 203194202 203194202 G A CHIT1 Silent p.I96I 0.21 TCGA-S4-A8RP-01 1 39951311 39951311 T C MACF1 Silent p.L5380L 0.25 TCGA-S4-A8RP-01 2 74597120 74597120 C T DCTN1 Missense_Mutation p.R455H 0.23 tolerated(0.05) probably_damaging(0.985) TCGA-S4-A8RP-01 3 42251664 42251664 C A TRAK1 Intron 0.23 TCGA-S4-A8RP-01 3 4345079 4345079 A G SETMAR Missense_Mutation p.T9A 0.24 tolerated_low_confidence(0.82) benign(0) TCGA-S4-A8RP-01 3 9934929 9934930 - G JAGN1 Frame_Shift_Ins p.S143Ffs*41 0.30 TCGA-S4-A8RP-01 5 140553447 140553447 G A PCDHB7 Missense_Mutation p.R344Q 0.17 deleterious_low_confidence(0.04) benign(0) TCGA-S4-A8RP-01 5 63257207 63257207 C T HTR1A Missense_Mutation p.A114T 0.14 deleterious(0.04) possibly_damaging(0.574) TCGA-S4-A8RP-01 5 7869105 7869105 G A FASTKD3 5'UTR 0.21 TCGA-S4-A8RP-01 6 1624387 1624387 G A GMDS 3'UTR 0.22 TCGA-S4-A8RP-01 6 31382878 31382878 T G MICA 3'UTR 0.17 TCGA-S4-A8RP-01 6 57018799 57018799 A G ZNF451 Silent p.G1008G 0.24 TCGA-S4-A8RP-01 7 103132427 103132427 A G RELN Missense_Mutation p.V3139A 0.23 deleterious(0.03) benign(0.194) TCGA-S4-A8RP-01 7 142458439 142458439 T C PRSS1 Missense_Mutation p.V25A 0.09 deleterious(0) possibly_damaging(0.725) TCGA-S4-A8RP-01 7 142479942 142479942 T C PRSS3P2 RNA 0.05 TCGA-S4-A8RP-01 7 151046243 151046243 A G NUB1 Missense_Mutation p.I92V 0.26 tolerated(1) benign(0.006) TCGA-S4-A8RP-01 8 144891881 144891881 C T SCRIB Missense_Mutation p.R513Q 0.19 probably_damaging(0.998) TCGA-US-A774-01 10 14976718 14976718 T C DCLRE1C Missense_Mutation p.Y174C 0.05 deleterious(0) probably_damaging(0.923) TCGA-US-A774-01 10 25510077 25510077 C A GPR158 Missense_Mutation p.N333K 0.05 deleterious(0.02) possibly_damaging(0.519) TCGA-US-A774-01 11 43429013 43429013 A T TTC17 Silent p.P650P 0.06 TCGA-US-A774-01 11 7111053 7111053 G A RBMXL2 Silent p.S234S 0.06 TCGA-US-A774-01 11 89774695 89774695 A G TRIM49C Missense_Mutation p.I446V 0.45 tolerated(0.25) benign(0.012) TCGA-US-A774-01 13 24242948 24242948 C T TNFRSF19 Silent p.N319N 0.05 TCGA-US-A774-01 16 21209136 21209136 G T ZP2 Missense_Mutation p.S682R 0.06 tolerated_low_confidence(0.58) benign(0.017) TCGA-US-A774-01 16 24104167 24104167 C T PRKCB Silent p.Y195Y 0.07 TCGA-US-A774-01 17 18539709 18539709 A G TBC1D28 3'UTR 0.06 TCGA-US-A774-01 17 60689888 60689888 T G TLK2 Missense_Mutation p.S739A 0.04 tolerated_low_confidence(0.87) benign(0.044) TCGA-US-A774-01 1 177199004 177199004 G A BRINP2 5'UTR 0.05 TCGA-US-A774-01 1 186024700 186024700 C T HMCN1 Silent p.H2346H 0.05 TCGA-US-A774-01 1 206773158 206773158 C T EIF2D Silent p.E327E 0.06 TCGA-US-A774-01 1 242451663 242451663 C T PLD5 Splice_Site p.X165_splice 0.05 TCGA-US-A774-01 21 11097591 11097591 G A BAGE2 RNA 0.04 TCGA-US-A774-01 22 26422752 26422752 G A MYO18B Missense_Mutation p.G2271D 0.11 deleterious(0.01) possibly_damaging(0.517) TCGA-US-A774-01 2 1480921 1480921 G A TPO Missense_Mutation p.A295T 0.08 tolerated(0.08) benign(0.358) TCGA-US-A774-01 2 148657443 148657443 C A ACVR2A Nonsense_Mutation p.Y168* 0.04 TCGA-US-A774-01 2 148657447 148657447 C G ACVR2A Missense_Mutation p.P170A 0.03 tolerated(0.51) benign(0.008) TCGA-US-A774-01 2 162875264 162875264 C T DPP4 Silent p.A465A 0.04 TCGA-US-A774-01 2 97541970 97541970 C T FAM178B 3'UTR 0.09 TCGA-US-A774-01 3 188592235 188592235 G T LPP Missense_Mutation p.V603L 0.04 tolerated(0.07) benign(0.053) TCGA-US-A774-01 3 50095912 50095912 A G RBM6 Missense_Mutation p.T683A 0.07 tolerated(0.25) benign(0.299) TCGA-US-A774-01 4 110756591 110756591 C T RRH Nonsense_Mutation p.R123* 0.07 TCGA-US-A774-01 6 27839741 27839741 A C HIST1H3I Missense_Mutation p.V118G 0.06 deleterious_low_confidence(0) benign(0.11) TCGA-US-A774-01 7 100683951 100683951 C T MUC17 Missense_Mutation p.S3085L 0.05 probably_damaging(0.942) TCGA-US-A776-01 10 103907024 103907024 C T PPRC1 Silent p.R1425R 0.08 TCGA-US-A776-01 10 124402694 124402694 G A DMBT1 Missense_Mutation p.R2341H 0.24 deleterious(0) probably_damaging(0.991) TCGA-US-A776-01 10 6264820 6264820 C T PFKFB3 Silent p.S362S 0.46 TCGA-US-A776-01 11 108158373 108158373 T G ATM Nonsense_Mutation p.L1347* 0.87 TCGA-US-A776-01 11 111746220 111746220 C A FDXACB1 Missense_Mutation p.S434I 0.24 deleterious(0.03) benign(0.395) TCGA-US-A776-01 11 124135465 124135465 C T OR8G5 Missense_Mutation p.T248I 0.25 tolerated(0.09) benign(0.163) TCGA-US-A776-01 11 22297720 22297720 A C ANO5 Missense_Mutation p.K832T 0.07 deleterious(0) probably_damaging(0.938) TCGA-US-A776-01 11 5905894 5905894 C A OR52E4 Silent p.R124R 0.04 TCGA-US-A776-01 11 76371472 76371472 G A LRRC32 Missense_Mutation p.R389W 0.20 deleterious(0) probably_damaging(0.982) TCGA-US-A776-01 11 7982120 7982120 G T NLRP10 Missense_Mutation p.L347I 0.10 deleterious(0.05) possibly_damaging(0.788) TCGA-US-A776-01 12 101336205 101336205 G A ANO4 Silent p.K81K 0.45 TCGA-US-A776-01 12 121867911 121867911 G A KDM2B 3'UTR 0.04 TCGA-US-A776-01 12 121878657 121878657 A G KDM2B Missense_Mutation p.M1191T 0.19 deleterious(0) benign(0.205) TCGA-US-A776-01 12 122213529 122213529 G A TMEM120B Silent p.A307A 0.42 TCGA-US-A776-01 12 21693480 21693480 C T GYS2 Missense_Mutation p.R558H 0.15 tolerated(0.06) possibly_damaging(0.795) TCGA-US-A776-01 12 4665646 4665646 G C RAD51AP1 Missense_Mutation p.K300N 0.08 deleterious(0) probably_damaging(0.913) TCGA-US-A776-01 12 6952186 6952186 C T GNB3 Missense_Mutation p.T50M 0.04 deleterious(0.02) possibly_damaging(0.774) TCGA-US-A776-01 12 81205274 81205274 C T LIN7A Silent p.Q224Q 0.09 TCGA-US-A776-01 13 25264838 25264838 T A ATP12A Missense_Mutation p.Y260N 0.05 deleterious(0) possibly_damaging(0.717) TCGA-US-A776-01 13 25272866 25272866 G A ATP12A Missense_Mutation p.R534H 0.52 deleterious(0) possibly_damaging(0.767) TCGA-US-A776-01 13 25480968 25480968 T C CENPJ Missense_Mutation p.N403S 0.10 tolerated(0.3) benign(0.003) TCGA-US-A776-01 13 97638935 97638935 A G OXGR1 3'UTR 0.13 TCGA-US-A776-01 14 105207231 105207231 A G ADSSL1 Missense_Mutation p.I257V 0.04 tolerated(1) benign(0) TCGA-US-A776-01 14 105396428 105396428 C T PLD4 Missense_Mutation p.R235W 0.06 deleterious(0) probably_damaging(1) TCGA-US-A776-01 14 33147660 33147660 C G AKAP6 Missense_Mutation p.S958R 0.06 deleterious(0.05) possibly_damaging(0.748) TCGA-US-A776-01 14 72939637 72939637 C T RGS6 Silent p.A198A 0.05 TCGA-US-A776-01 14 75513333 75513333 A G MLH3 Missense_Mutation p.V1009A 0.18 tolerated(0.63) benign(0.005) TCGA-US-A776-01 15 43888718 43888718 G C CKMT1B Missense_Mutation p.G289R 0.78 deleterious(0) probably_damaging(0.999) TCGA-US-A776-01 15 59179218 59179218 C T SLTM Missense_Mutation p.E931K 0.05 tolerated(0.15) probably_damaging(0.952) TCGA-US-A776-01 15 73635767 73635767 G A HCN4 Missense_Mutation p.R390C 0.17 deleterious(0) unknown(0) TCGA-US-A776-01 15 75932242 75932242 G C IMP3 Missense_Mutation p.P90A 0.08 tolerated(0.21) benign(0.013) TCGA-US-A776-01 16 1306591 1306591 G T TPSD1 Missense_Mutation p.V53L 0.15 deleterious(0) probably_damaging(0.937) TCGA-US-A776-01 16 1399510 1399510 C T TSR3 Silent p.T289T 0.04 TCGA-US-A776-01 16 14738159 14738159 C T BFAR 5'UTR 0.37 TCGA-US-A776-01 16 58562472 58562472 C T CNOT1 Silent p.V2120V 0.17 TCGA-US-A776-01 16 67859904 67859904 C T TSNAXIP1 Missense_Mutation p.R303W 0.38 deleterious(0) probably_damaging(0.99) TCGA-US-A776-01 17 15534959 15534959 G T RP11-385D13.1 Missense_Mutation p.P362H 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-US-A776-01 17 3432261 3432261 G A TRPV3 Missense_Mutation p.P424L 0.45 deleterious(0.02) possibly_damaging(0.614) TCGA-US-A776-01 17 40321553 40321553 C T KCNH4 Missense_Mutation p.R511H 0.41 deleterious(0) probably_damaging(0.998) TCGA-US-A776-01 17 40970815 40970815 C T BECN1 Missense_Mutation p.R114Q 0.10 tolerated(0.69) benign(0.022) TCGA-US-A776-01 17 41955246 41955246 G A MPP2 Missense_Mutation p.R530C 0.42 deleterious(0.02) benign(0.04) TCGA-US-A776-01 17 45487057 45487057 G A EFCAB13 Missense_Mutation p.E760K 0.06 deleterious(0.04) benign(0.373) TCGA-US-A776-01 17 48212935 48212935 C G PPP1R9B Missense_Mutation p.D793H 0.52 deleterious(0.01) possibly_damaging(0.885) TCGA-US-A776-01 17 62788497 62788497 C T PLEKHM1P RNA 0.06 TCGA-US-A776-01 18 2722606 2722606 G A SMCHD1 Missense_Mutation p.E850K 0.05 tolerated(0.45) possibly_damaging(0.687) TCGA-US-A776-01 19 38966037 38966037 G A RYR1 Missense_Mutation p.V1414M 0.19 probably_damaging(0.984) TCGA-US-A776-01 19 43922332 43922332 C A TEX101 Nonsense_Mutation p.S196* 0.04 TCGA-US-A776-01 19 44981580 44981580 C A ZNF180 Missense_Mutation p.R373I 0.04 deleterious(0) probably_damaging(0.93) TCGA-US-A776-01 19 48981402 48981402 G A CYTH2 Silent p.T295T 0.06 TCGA-US-A776-01 19 51021944 51021944 C T LRRC4B Silent p.A342A 0.15 TCGA-US-A776-01 19 51135733 51135733 A C SYT3 Missense_Mutation p.L162V 0.27 tolerated(0.21) probably_damaging(0.991) TCGA-US-A776-01 19 51135878 51135878 G A SYT3 Silent p.G113G 0.06 TCGA-US-A776-01 19 51767330 51767330 C A SIGLECL1 Missense_Mutation p.L2I 0.06 tolerated(0.06) unknown(0) TCGA-US-A776-01 19 54200806 54200806 G C MIR525 RNA 0.07 TCGA-US-A776-01 19 56467042 56467042 C T NLRP8 Missense_Mutation p.R540C 0.03 tolerated(0.18) benign(0.008) TCGA-US-A776-01 1 116247905 116247905 C T CASQ2 Missense_Mutation p.E283K 0.16 tolerated(0.08) probably_damaging(0.943) TCGA-US-A776-01 1 154072575 154072575 C T NUP210L Missense_Mutation p.A622T 0.19 tolerated(0.38) benign(0.017) TCGA-US-A776-01 1 156215327 156215327 G - PAQR6 Frame_Shift_Del p.R65Vfs*49 0.42 TCGA-US-A776-01 1 158224435 158224435 G T CD1A 5'UTR 0.45 TCGA-US-A776-01 1 158618342 158618342 C T SPTA1 Missense_Mutation p.R1224Q 0.48 tolerated(0.47) benign(0) TCGA-US-A776-01 1 176564512 176564512 T A PAPPA2 Missense_Mutation p.I591N 0.19 deleterious(0) probably_damaging(0.975) TCGA-US-A776-01 1 202931804 202931804 C G CYB5R1 Missense_Mutation p.V257L 0.14 deleterious(0.01) benign(0.176) TCGA-US-A776-01 1 218609475 218609475 G A TGFB2 Silent p.A334A 0.04 TCGA-US-A776-01 1 224872534 224872534 C T CNIH3 Missense_Mutation p.L63F 0.04 tolerated(0.23) benign(0.098) TCGA-US-A776-01 1 23110922 23110922 C T EPHB2 Missense_Mutation p.T55M 0.07 deleterious(0.02) possibly_damaging(0.812) TCGA-US-A776-01 1 47284367 47284367 C T CYP4B1 Missense_Mutation p.R474C 0.53 deleterious(0.01) possibly_damaging(0.885) TCGA-US-A776-01 1 55223794 55223794 G A PARS2 Silent p.I347I 0.52 TCGA-US-A776-01 1 57333282 57333282 G A C8A Silent p.Q26Q 0.15 TCGA-US-A776-01 1 90399492 90399492 G A LRRC8D Missense_Mutation p.E289K 0.12 deleterious(0) probably_damaging(0.998) TCGA-US-A776-01 20 3682127 3682127 G A SIGLEC1 Missense_Mutation p.R464C 0.04 deleterious(0) probably_damaging(0.934) TCGA-US-A776-01 20 57484420 57484420 C T GNAS Missense_Mutation p.R844C 0.59 deleterious(0.01) probably_damaging(1) TCGA-US-A776-01 21 34962091 34962091 A T CRYZL1 3'UTR 0.52 TCGA-US-A776-01 21 47360016 47360016 A C PCBP3 Missense_Mutation p.K328Q 0.11 tolerated(0.09) possibly_damaging(0.902) TCGA-US-A776-01 22 45959229 45959229 G A FBLN1 Intron 0.18 TCGA-US-A776-01 2 119739962 119739962 C A MARCO Missense_Mutation p.L347M 0.16 tolerated(0.35) unknown(0) TCGA-US-A776-01 2 120129941 120129941 C T DBI 3'UTR 0.14 TCGA-US-A776-01 2 136680484 136680484 G A DARS Silent p.A227A 0.10 TCGA-US-A776-01 2 179393379 179393387 TCTGAGAGT - TTN In_Frame_Del p.E35697_S35699del 0.41 TCGA-US-A776-01 2 189859047 189859047 C T COL3A1 Nonsense_Mutation p.R428* 0.05 TCGA-US-A776-01 2 198266548 198266548 T C SF3B1 Missense_Mutation p.N763S 0.34 tolerated(0.45) benign(0.009) TCGA-US-A776-01 2 96049770 96049770 C T KCNIP3 Silent p.S248S 0.16 TCGA-US-A776-01 3 12858160 12858160 C T CAND2 Nonsense_Mutation p.R577* 0.15 TCGA-US-A776-01 3 1445163 1445163 T C CNTN6 3'UTR 0.41 TCGA-US-A776-01 3 56789016 56789016 C T ARHGEF3 Missense_Mutation p.R155H 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-US-A776-01 3 59999777 59999777 C A FHIT Missense_Mutation p.V69L 0.16 tolerated(0.6) benign(0.048) TCGA-US-A776-01 4 100208113 100208113 G A ADH1A Silent p.D51D 0.05 TCGA-US-A776-01 4 157689020 157689020 G T PDGFC Missense_Mutation p.L276M 0.06 deleterious(0) probably_damaging(1) TCGA-US-A776-01 4 952216 952216 G A TMEM175 Missense_Mutation p.E483K 0.39 tolerated(0.92) benign(0.01) TCGA-US-A776-01 5 120022194 120022194 T A PRR16 Missense_Mutation p.S212R 0.06 deleterious_low_confidence(0.03) benign(0.015) TCGA-US-A776-01 5 140595334 140595334 G C PCDHB13 Missense_Mutation p.V547L 0.19 deleterious_low_confidence(0) benign(0.433) TCGA-US-A776-01 5 153789282 153789282 T C GALNT10 Missense_Mutation p.F449S 0.18 tolerated(0.4) benign(0.175) TCGA-US-A776-01 5 159822466 159822466 T C C5orf54 Missense_Mutation p.Y11C 0.45 deleterious(0) probably_damaging(0.999) TCGA-US-A776-01 5 41172372 41172372 C T C6 Missense_Mutation p.V416M 0.41 tolerated(0.09) probably_damaging(0.937) TCGA-US-A776-01 6 106987378 106987378 A T AIM1 Missense_Mutation p.I1199F 0.35 deleterious(0.02) probably_damaging(1) TCGA-US-A776-01 6 133135731 133135731 C T RPS12 5'UTR 0.42 TCGA-US-A776-01 6 142539725 142539725 C A VTA1 Missense_Mutation p.T290N 0.55 deleterious(0) probably_damaging(0.995) TCGA-US-A776-01 6 146480697 146480697 G A GRM1 Missense_Mutation p.R305H 0.06 deleterious(0.03) possibly_damaging(0.805) TCGA-US-A776-01 6 165846554 165846554 A T PDE10A Missense_Mutation p.L201I 0.29 tolerated(0.15) probably_damaging(0.91) TCGA-US-A776-01 6 88375514 88375514 A G ORC3 Missense_Mutation p.N666D 0.22 tolerated(1) benign(0.002) TCGA-US-A776-01 7 156994419 156994419 C A UBE3C Missense_Mutation p.L446I 0.04 deleterious(0.01) possibly_damaging(0.896) TCGA-US-A776-01 7 4876198 4876198 C T RADIL Missense_Mutation p.A192T 0.39 tolerated(0.07) benign(0.19) TCGA-US-A776-01 7 87912452 87912452 T A STEAP4 Missense_Mutation p.K163M 0.53 deleterious(0) probably_damaging(0.996) TCGA-US-A776-01 8 144681830 144681830 C T TIGD5 Missense_Mutation p.P586L 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-US-A776-01 8 72981266 72981266 C T TRPA1 Missense_Mutation p.V146M 0.04 tolerated(0.12) benign(0.031) TCGA-US-A776-01 9 136230524 136230524 A T SURF4 Missense_Mutation p.F219I 0.46 tolerated(0.31) benign(0.006) TCGA-US-A776-01 9 139262214 139262214 G A CARD9 Missense_Mutation p.R382C 0.36 deleterious(0) probably_damaging(1) TCGA-US-A776-01 9 37518160 37518160 C T FBXO10 Missense_Mutation p.G826S 0.04 tolerated(0.64) possibly_damaging(0.596) TCGA-US-A776-01 X 100547881 100547881 G A TAF7L Silent p.G51G 0.31 TCGA-US-A776-01 X 10094325 10094325 G A WWC3 Silent p.P695P 0.11 TCGA-US-A776-01 X 119509336 119509336 C T ATP1B4 Silent p.R224R 0.36 TCGA-US-A776-01 X 1471384 1471384 G A IL3RA Missense_Mutation p.V201I 0.07 tolerated(0.18) benign(0.089) TCGA-US-A776-01 X 149013926 149013926 G A MAGEA8 Missense_Mutation p.V294I 0.16 tolerated(0.06) benign(0.001) TCGA-US-A776-01 X 21675080 21675080 C T KLHL34 Missense_Mutation p.R276Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-US-A779-01 10 106214330 106214330 T G CCDC147 3'UTR 0.35 TCGA-US-A779-01 11 92599977 92599977 G A FAT3 Missense_Mutation p.R3910H 0.25 possibly_damaging(0.479) TCGA-US-A779-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.25 deleterious(0) benign(0.361) TCGA-US-A779-01 12 70003865 70003865 C T LRRC10 Missense_Mutation p.A252T 0.24 tolerated(0.24) benign(0.007) TCGA-US-A779-01 14 24877207 24877207 G T NYNRIN Missense_Mutation p.V111L 0.28 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-US-A779-01 14 74988701 74988701 G A LTBP2 Missense_Mutation p.R901C 0.09 deleterious(0) probably_damaging(0.943) TCGA-US-A779-01 14 92470800 92470800 C G TRIP11 Missense_Mutation p.D1174H 0.04 deleterious(0) probably_damaging(0.996) TCGA-US-A779-01 15 65822970 65822970 A T PTPLAD1 Translation_Start_Site p.M1? 0.42 deleterious_low_confidence(0) benign(0.034) TCGA-US-A779-01 16 3299648 3299648 C T MEFV Missense_Mutation p.R348H 0.22 tolerated(0.62) benign(0) TCGA-US-A779-01 16 66969241 66969241 G A CES2 5'UTR 0.23 TCGA-US-A779-01 17 7578373 7578373 T - TP53 Frame_Shift_Del p.D186Vfs*61 0.49 TCGA-US-A779-01 19 17417119 17417119 G T MRPL34 Silent p.L70L 0.23 TCGA-US-A779-01 19 45574148 45574148 C T CLASRP 3'UTR 0.07 TCGA-US-A779-01 19 46825050 46825050 A G HIF3A Missense_Mutation p.I388V 0.27 tolerated(0.19) benign(0.011) TCGA-US-A779-01 19 55814225 55814225 C T BRSK1 Missense_Mutation p.R340C 0.26 deleterious(0) possibly_damaging(0.689) TCGA-US-A779-01 1 157062424 157062424 C T ETV3L 3'UTR 0.05 TCGA-US-A779-01 1 196714957 196714957 A C CFH Silent p.G1107G 0.24 TCGA-US-A779-01 1 223465880 223465880 C T SUSD4 Missense_Mutation p.G88R 0.24 deleterious(0.03) benign(0.349) TCGA-US-A779-01 1 24447351 24447351 T C IL22RA1 Missense_Mutation p.T557A 0.23 tolerated(0.36) benign(0.004) TCGA-US-A779-01 22 17308496 17308496 G A HSFY1P1 RNA 0.27 TCGA-US-A779-01 22 41742053 41742053 C T ZC3H7B Silent p.F502F 0.03 TCGA-US-A779-01 22 50716129 50716129 G C PLXNB2 Missense_Mutation p.P1696R 0.20 deleterious(0) probably_damaging(1) TCGA-US-A779-01 2 161159916 161159916 T C RBMS1 Missense_Mutation p.K162R 0.14 deleterious(0.03) benign(0.378) TCGA-US-A779-01 2 241680688 241680688 G A KIF1A Silent p.G1249G 0.33 TCGA-US-A779-01 2 27427649 27427685 CTGCACTCACAGCACAGCAGCCTTCTCCGTGCGGGAA - SLC5A6 Splice_Site p.X283_splice 0.23 TCGA-US-A779-01 2 96780765 96780765 C T ADRA2B Missense_Mutation p.G375D 0.24 deleterious(0) probably_damaging(0.999) TCGA-US-A779-01 3 124953158 124953158 C T ZNF148 Missense_Mutation p.R228H 0.17 tolerated(0.31) benign(0.012) TCGA-US-A779-01 3 72428210 72428210 C A RYBP Nonsense_Mutation p.E228* 0.29 TCGA-US-A779-01 3 73440202 73440202 G A PDZRN3 Silent p.D440D 0.03 TCGA-US-A779-01 4 3318330 3318330 G A RGS12 Missense_Mutation p.G145R 0.25 deleterious(0) probably_damaging(1) TCGA-US-A779-01 4 90872802 90872802 G A MMRN1 Silent p.T1055T 0.34 TCGA-US-A779-01 6 27420760 27420760 A T ZNF184 Missense_Mutation p.L193H 0.11 tolerated(0.18) benign(0.41) TCGA-US-A779-01 6 31964274 31964274 C T C4A Silent p.H1191H 0.03 TCGA-US-A779-01 7 120991269 120991269 A T FAM3C Silent p.T174T 0.21 TCGA-US-A779-01 7 49815696 49815696 G A VWC2 Missense_Mutation p.G222D 0.24 deleterious(0) possibly_damaging(0.879) TCGA-US-A779-01 8 113697844 113697844 C T CSMD3 Missense_Mutation p.R758Q 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-US-A779-01 8 117869572 117869572 G A RAD21 Missense_Mutation p.H208Y 0.24 tolerated(1) benign(0.333) TCGA-US-A779-01 8 22064900 22064900 C T BMP1 Missense_Mutation p.P816S 0.21 tolerated(0.28) benign(0.158) TCGA-US-A779-01 X 18183254 18183254 G A BEND2 Missense_Mutation p.R759C 0.23 deleterious(0.02) possibly_damaging(0.735) TCGA-US-A779-01 X 44929370 44929371 - C KDM6A Frame_Shift_Ins p.T825Nfs*10 0.22 TCGA-US-A77E-01 10 26457784 26457784 C T MYO3A Silent p.S1085S 0.16 TCGA-US-A77E-01 11 116691783 116691783 G A APOA4 Missense_Mutation p.P331S 0.19 tolerated(0.21) possibly_damaging(0.684) TCGA-US-A77E-01 11 118343199 118343199 G A KMT2A Missense_Mutation p.R442Q 0.20 probably_damaging(0.945) TCGA-US-A77E-01 11 118416522 118416522 A G IFT46 Missense_Mutation p.I291T 0.15 tolerated(0.18) benign(0.015) TCGA-US-A77E-01 11 130284700 130284700 G A ADAMTS8 Missense_Mutation p.A431V 0.22 deleterious(0.01) benign(0.005) TCGA-US-A77E-01 11 20676459 20676459 C T SLC6A5 3'UTR 0.17 TCGA-US-A77E-01 11 27016362 27016362 G A FIBIN Missense_Mutation p.V97M 0.18 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-US-A77E-01 11 48510885 48510885 C A OR4A47 Missense_Mutation p.P181T 0.04 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-US-A77E-01 11 55418776 55418776 A C OR4S2 Missense_Mutation p.I133L 0.05 tolerated(0.07) benign(0.04) TCGA-US-A77E-01 11 63680166 63680166 G A RCOR2 Nonsense_Mutation p.Q337* 0.26 TCGA-US-A77E-01 11 64082689 64082689 G A ESRRA Missense_Mutation p.R320Q 0.23 tolerated(0.17) benign(0.011) TCGA-US-A77E-01 12 109719343 109719343 G A FOXN4 Missense_Mutation p.P388L 0.21 deleterious(0) possibly_damaging(0.626) TCGA-US-A77E-01 13 23985423 23985423 C T SACS 5'UTR 0.25 TCGA-US-A77E-01 14 22466392 22466392 T G TRAV17 Missense_Mutation p.F108V 0.23 deleterious(0.03) benign(0.037) TCGA-US-A77E-01 14 22749631 22749631 G A TRAV38-2DV8 Silent p.%3D 0.15 TCGA-US-A77E-01 15 63353068 63353068 G T TPM1 Missense_Mutation p.V165L 0.18 deleterious(0) possibly_damaging(0.853) TCGA-US-A77E-01 16 17352929 17352929 G A XYLT1 Missense_Mutation p.R277C 0.18 deleterious(0) probably_damaging(0.991) TCGA-US-A77E-01 16 56670771 56670772 - T MT1M 3'Flank 0.25 TCGA-US-A77E-01 16 57803635 57803635 C T KIFC3 Missense_Mutation p.V364I 0.19 tolerated(0.08) benign(0.278) TCGA-US-A77E-01 16 65032559 65032559 C T CDH11 Silent p.S143S 0.19 TCGA-US-A77E-01 16 67273270 67273270 C T FHOD1 Missense_Mutation p.G97S 0.11 tolerated(0.1) benign(0.001) TCGA-US-A77E-01 16 81942078 81942078 A T PLCG2 Nonsense_Mutation p.K539* 0.19 TCGA-US-A77E-01 16 85813226 85813226 G A EMC8 3'UTR 0.21 TCGA-US-A77E-01 17 39643660 39643660 G A KRT36 Silent p.I310I 0.15 TCGA-US-A77E-01 17 73124988 73124988 C T ARMC7 Missense_Mutation p.S151L 0.23 deleterious(0) probably_damaging(0.95) TCGA-US-A77E-01 17 7369754 7369754 G A ZBTB4 Missense_Mutation p.P123S 0.07 unknown(0) TCGA-US-A77E-01 17 77081767 77081767 C T ENGASE Missense_Mutation p.P589L 0.19 tolerated(0.35) benign(0.001) TCGA-US-A77E-01 17 78085870 78085870 C T GAA Silent p.Y575Y 0.20 TCGA-US-A77E-01 19 23159750 23159750 T C ZNF728 Missense_Mutation p.Y130C 0.14 deleterious(0.04) possibly_damaging(0.904) TCGA-US-A77E-01 19 41096643 41096643 C T SHKBP1 Silent p.G592G 0.15 TCGA-US-A77E-01 19 43411874 43411874 G A PSG6 Missense_Mutation p.P280L 0.19 tolerated(0.08) benign(0.027) TCGA-US-A77E-01 19 47823129 47823129 C T C5AR1 Missense_Mutation p.T32M 0.19 tolerated(0.16) benign(0.143) TCGA-US-A77E-01 19 56369561 56369561 A G NLRP4 Missense_Mutation p.K268E 0.18 deleterious(0) probably_damaging(0.968) TCGA-US-A77E-01 19 56467178 56467178 G A NLRP8 Missense_Mutation p.R585K 0.15 tolerated(1) benign(0.002) TCGA-US-A77E-01 19 7682262 7682262 G A CAMSAP3 Missense_Mutation p.R1115H 0.20 tolerated(0.06) probably_damaging(0.984) TCGA-US-A77E-01 19 868430 868430 C T MED16 Nonsense_Mutation p.W823* 0.08 TCGA-US-A77E-01 1 152884038 152884038 G A IVL 3'UTR 0.17 TCGA-US-A77E-01 1 156639754 156639754 G T NES Missense_Mutation p.S1409Y 0.06 deleterious(0) probably_damaging(0.999) TCGA-US-A77E-01 1 1961076 1961076 G A GABRD Missense_Mutation p.V312I 0.16 tolerated(0.9) probably_damaging(0.997) TCGA-US-A77E-01 1 224868727 224868727 C T CNIH3 Missense_Mutation p.A50V 0.15 tolerated(0.18) probably_damaging(0.952) TCGA-US-A77E-01 1 228582348 228582348 A C TRIM11 3'UTR 0.20 TCGA-US-A77E-01 20 20350394 20350394 G A INSM1 Missense_Mutation p.E495K 0.14 deleterious(0) benign(0.305) TCGA-US-A77E-01 20 42143799 42143799 G A L3MBTL1 Missense_Mutation p.R196Q 0.04 deleterious(0.01) probably_damaging(0.913) TCGA-US-A77E-01 20 47324917 47324917 C T PREX1 Missense_Mutation p.A222T 0.14 tolerated(0.16) probably_damaging(0.977) TCGA-US-A77E-01 20 57484421 57484421 G A GNAS Missense_Mutation p.R844H 0.31 deleterious(0.01) probably_damaging(1) TCGA-US-A77E-01 20 62078155 62078158 ACAG - KCNQ2 Frame_Shift_Del p.S110Cfs*22 0.18 TCGA-US-A77E-01 21 11039066 11039066 A G BAGE2 RNA 0.03 TCGA-US-A77E-01 21 30532269 30532269 C T MAP3K7CL Missense_Mutation p.P147L 0.16 deleterious(0.05) probably_damaging(0.928) TCGA-US-A77E-01 21 44524456 44524456 G A U2AF1 Missense_Mutation p.S34F 0.16 deleterious(0) possibly_damaging(0.835) TCGA-US-A77E-01 21 47552344 47552344 G A COL6A2 Missense_Mutation p.V980M 0.24 deleterious(0.04) probably_damaging(0.991) TCGA-US-A77E-01 21 47664991 47664991 G A MCM3AP Missense_Mutation p.H1590Y 0.17 tolerated(0.47) benign(0.172) TCGA-US-A77E-01 2 107450522 107450522 G A ST6GAL2 Missense_Mutation p.R342C 0.16 probably_damaging(1) TCGA-US-A77E-01 2 113322044 113322044 C T POLR1B Missense_Mutation p.P572S 0.16 tolerated(0.48) benign(0.001) TCGA-US-A77E-01 2 145162490 145162490 G A ZEB2 Missense_Mutation p.R169C 0.17 deleterious(0) possibly_damaging(0.556) TCGA-US-A77E-01 2 179466769 179466769 G A TTN Missense_Mutation p.S18410L 0.19 TCGA-US-A77E-01 2 189929337 189929337 T C COL5A2 Silent p.K554K 0.13 TCGA-US-A77E-01 2 210637852 210637852 G T UNC80 Nonsense_Mutation p.E43* 0.17 TCGA-US-A77E-01 2 225651759 225651759 G A DOCK10 Missense_Mutation p.R1879C 0.16 deleterious(0) probably_damaging(0.999) TCGA-US-A77E-01 2 241827790 241827790 G A C2orf54 Silent p.S390S 0.19 TCGA-US-A77E-01 2 25384178 25384178 G A POMC Silent p.D192D 0.22 TCGA-US-A77E-01 3 110852707 110852707 G A PVRL3 Missense_Mutation p.R432Q 0.20 tolerated(0.3) benign(0.007) TCGA-US-A77E-01 3 130718462 130718462 C G ATP2C1 Missense_Mutation p.P897R 0.16 tolerated(0.22) probably_damaging(0.994) TCGA-US-A77E-01 3 132175223 132175223 C A DNAJC13 Silent p.L359L 0.18 TCGA-US-A77E-01 3 13672892 13672892 G A FBLN2 Missense_Mutation p.G1050E 0.35 deleterious(0) probably_damaging(1) TCGA-US-A77E-01 3 148599357 148599357 C T CPA3 Nonsense_Mutation p.R209* 0.12 TCGA-US-A77E-01 3 46729748 46729748 G A ALS2CL Missense_Mutation p.R48W 0.15 tolerated(0.05) possibly_damaging(0.453) TCGA-US-A77E-01 3 52392752 52392752 C T DNAH1 Missense_Mutation p.T1422M 0.10 benign(0.296) TCGA-US-A77E-01 3 97852400 97852400 C T OR5H1 Missense_Mutation p.P287S 0.17 deleterious(0.01) possibly_damaging(0.671) TCGA-US-A77E-01 4 141622724 141622724 G A TBC1D9 Missense_Mutation p.R59W 0.16 deleterious(0) probably_damaging(0.997) TCGA-US-A77E-01 4 17488658 17488658 A G QDPR 3'UTR 0.22 TCGA-US-A77E-01 4 177100741 177100741 T G WDR17 3'UTR 0.05 TCGA-US-A77E-01 4 22749669 22749669 T G GBA3 Missense_Mutation p.I346S 0.15 deleterious(0.03) possibly_damaging(0.899) TCGA-US-A77E-01 4 94750654 94750656 AAG - ATOH1 In_Frame_Del p.K194del 0.13 TCGA-US-A77E-01 5 169533243 169533243 G A FOXI1 Silent p.P94P 0.17 TCGA-US-A77E-01 5 172744926 172744926 C T STC2 Missense_Mutation p.G278D 0.20 tolerated_low_confidence(0.09) benign(0.013) TCGA-US-A77E-01 5 40981607 40981607 G A C7 Missense_Mutation p.A822T 0.19 tolerated(0.63) benign(0.004) TCGA-US-A77E-01 5 82876174 82876174 C T VCAN Missense_Mutation p.S3371L 0.23 deleterious(0) possibly_damaging(0.867) TCGA-US-A77E-01 6 122773086 122773086 T C SERINC1 Missense_Mutation p.N236D 0.21 deleterious(0) probably_damaging(0.992) TCGA-US-A77E-01 6 123539785 123539785 A G TRDN Silent p.G717G 0.15 TCGA-US-A77E-01 6 29624847 29624847 G A MOG 5'Flank 0.09 TCGA-US-A77E-01 6 56492887 56492887 C T DST Nonsense_Mutation p.W979* 0.06 TCGA-US-A77E-01 6 75901461 75901461 G A COL12A1 Missense_Mutation p.S117L 0.13 benign(0) TCGA-US-A77E-01 7 138566147 138566147 G C KIAA1549 Missense_Mutation p.R1406G 0.15 deleterious(0) probably_damaging(1) TCGA-US-A77E-01 7 140477831 140477845 GAGGTGTAGGTGCTG - BRAF In_Frame_Del p.T488_Q493delinsK 0.12 TCGA-US-A77E-01 7 142008771 142008771 C T TRBV3-1 Missense_Mutation p.R82C 0.14 deleterious(0.03) possibly_damaging(0.735) TCGA-US-A77E-01 7 142494400 142494400 G A TRBJ2-2P Missense_Mutation p.R7H 0.30 unknown(0) TCGA-US-A77E-01 7 148951330 148951330 C T ZNF212 Missense_Mutation p.H438Y 0.17 deleterious(0.01) possibly_damaging(0.876) TCGA-US-A77E-01 7 154667694 154667694 C T DPP6 Silent p.G654G 0.08 TCGA-US-A77E-01 7 2984085 2984085 G A CARD11 Missense_Mutation p.R149C 0.15 deleterious(0) possibly_damaging(0.899) TCGA-US-A77E-01 7 97858456 97858456 G T TECPR1 Missense_Mutation p.H769N 0.19 deleterious(0) possibly_damaging(0.852) TCGA-US-A77E-01 8 39775725 39775725 A T IDO1 Missense_Mutation p.K101M 0.22 deleterious(0) probably_damaging(0.959) TCGA-US-A77E-01 8 55372148 55372148 G T SOX17 Missense_Mutation p.G280C 0.42 deleterious(0.04) benign(0.049) TCGA-US-A77E-01 9 110249341 110249341 G T KLF4 Missense_Mutation p.S411Y 0.16 deleterious(0.02) possibly_damaging(0.474) TCGA-US-A77E-01 9 23692693 23692693 A C ELAVL2 Missense_Mutation p.N314K 0.04 tolerated(0.09) possibly_damaging(0.857) TCGA-US-A77E-01 9 86504131 86504131 A C KIF27 Missense_Mutation p.I616R 0.04 deleterious(0.01) possibly_damaging(0.498) TCGA-US-A77E-01 X 77244909 77244909 A T ATP7A Missense_Mutation p.E264V 0.33 tolerated(0.11) benign(0.097) TCGA-US-A77G-01 10 102056026 102056026 G A PKD2L1 Silent p.F403F 0.20 TCGA-US-A77G-01 11 101375398 101375398 C T TRPC6 Missense_Mutation p.R101H 0.19 tolerated(0.09) probably_damaging(0.935) TCGA-US-A77G-01 11 117651507 117651507 C T DSCAML1 Missense_Mutation p.G82D 0.35 tolerated(0.28) benign(0.287) TCGA-US-A77G-01 11 66084378 66084378 G A CD248 Missense_Mutation p.R41C 0.20 deleterious(0) probably_damaging(0.938) TCGA-US-A77G-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.16 deleterious(0.03) benign(0.376) TCGA-US-A77G-01 12 65113959 65113959 A G GNS Missense_Mutation p.F475L 0.22 deleterious(0) probably_damaging(0.994) TCGA-US-A77G-01 13 60557994 60557994 C T DIAPH3 Silent p.E463E 0.19 TCGA-US-A77G-01 14 45658329 45658329 G T FANCM Missense_Mutation p.D1702Y 0.19 deleterious(0.04) possibly_damaging(0.789) TCGA-US-A77G-01 16 27640032 27640032 A G KIAA0556 Missense_Mutation p.H64R 0.09 tolerated(0.47) benign(0.276) TCGA-US-A77G-01 17 31082528 31082528 G A MYO1D Silent p.A483A 0.03 TCGA-US-A77G-01 18 48604742 48604743 CC - SMAD4 Frame_Shift_Del p.P522Lfs*4 0.29 TCGA-US-A77G-01 19 36223712 36223712 C - KMT2B Frame_Shift_Del p.P2088Qfs*3 0.15 TCGA-US-A77G-01 19 43433639 43433639 G T PSG7 Missense_Mutation p.P222T 0.20 tolerated(0.06) benign(0.393) TCGA-US-A77G-01 1 161512638 161512638 C T FCGR3A 3'UTR 0.53 TCGA-US-A77G-01 1 231339743 231339743 C T TRIM67 Silent p.A555A 0.11 TCGA-US-A77G-01 20 47247332 47247332 C A PREX1 Missense_Mutation p.R1509S 0.23 deleterious(0) possibly_damaging(0.721) TCGA-US-A77G-01 22 37707094 37707094 G A CYTH4 Missense_Mutation p.E292K 0.23 tolerated(0.11) possibly_damaging(0.525) TCGA-US-A77G-01 2 220089227 220089227 C T ATG9A Missense_Mutation p.R289H 0.21 tolerated(0.76) probably_damaging(0.98) TCGA-US-A77G-01 3 10417285 10417285 G A ATP2B2 Silent p.Y415Y 0.23 TCGA-US-A77G-01 3 16312479 16312479 T G OXNAD1 Missense_Mutation p.M7R 0.21 tolerated_low_confidence(0.31) benign(0.024) TCGA-US-A77G-01 3 38639417 38639417 G A SCN5A Missense_Mutation p.R689C 0.18 deleterious(0) possibly_damaging(0.655) TCGA-US-A77G-01 3 47452686 47452686 C T PTPN23 Missense_Mutation p.S1133F 0.22 benign(0.264) TCGA-US-A77G-01 3 52383089 52383089 C T DNAH1 Silent p.S764S 0.21 TCGA-US-A77G-01 4 138449640 138449640 A T PCDH18 Missense_Mutation p.I911N 0.20 tolerated(0.46) benign(0.001) TCGA-US-A77G-01 4 38799732 38799732 G A TLR1 Nonsense_Mutation p.Q241* 0.23 TCGA-US-A77G-01 4 69337338 69337338 A G TMPRSS11E Missense_Mutation p.K163E 0.17 tolerated(0.52) benign(0.069) TCGA-US-A77G-01 5 140216008 140216008 G A PCDHA7 Silent p.S680S 0.18 TCGA-US-A77G-01 5 140221029 140221029 C T PCDHA8 Silent p.H41H 0.10 TCGA-US-A77G-01 5 140773877 140773877 G A PCDHGA8 Silent p.A499A 0.21 TCGA-US-A77G-01 5 176520430 176520430 C T FGFR4 Silent p.S425S 0.19 TCGA-US-A77G-01 5 35691186 35691187 - CCACCCT SPEF2 Frame_Shift_Ins p.N528Tfs*16 0.08 TCGA-US-A77G-01 5 60448818 60448818 G A NDUFAF2 3'UTR 0.15 TCGA-US-A77G-01 5 73931388 73931388 T A ENC1 Missense_Mutation p.D308V 0.18 deleterious(0) probably_damaging(0.935) TCGA-US-A77G-01 5 85592175 85592175 C T NBPF22P RNA 0.18 TCGA-US-A77G-01 6 29641221 29641221 G A ZFP57 Missense_Mutation p.R223C 0.25 deleterious(0.02) benign(0.157) TCGA-US-A77G-01 6 43543738 43543738 G A XPO5 5'UTR 0.11 TCGA-US-A77G-01 7 42005520 42005520 G A GLI3 Missense_Mutation p.R1051W 0.24 tolerated(0.07) probably_damaging(0.915) TCGA-US-A77G-01 7 44805162 44805162 C G ZMIZ2 Missense_Mutation p.S742R 0.17 deleterious(0.05) benign(0.134) TCGA-US-A77G-01 8 144896264 144896264 G A SCRIB Missense_Mutation p.R62C 0.24 probably_damaging(0.999) TCGA-US-A77G-01 9 21974679 21974679 G A CDKN2A Nonsense_Mutation p.Q50* 0.25 TCGA-US-A77G-01 X 150869406 150869406 G A PRRG3 Silent p.A199A 0.48 TCGA-US-A77G-01 X 153050878 153050892 CACAGTTCAGCGCCT - SRPK3 In_Frame_Del p.T536_F541delinsI 0.45 TCGA-XD-AAUG-01 10 5443000 5443000 G A TUBAL3 Silent p.D18D 0.04 TCGA-XD-AAUG-01 11 7847156 7847156 G A OR5P3 Missense_Mutation p.R122C 0.07 deleterious(0.01) benign(0.165) TCGA-XD-AAUG-01 12 19511180 19511180 G A PLEKHA5 Missense_Mutation p.V1053M 0.05 deleterious(0.03) probably_damaging(0.999) TCGA-XD-AAUG-01 12 49427679 49427679 C T KMT2D Silent p.Q3603Q 0.10 TCGA-XD-AAUG-01 17 48273888 48273888 C T COL1A1 Missense_Mutation p.G287D 0.06 unknown(0) TCGA-XD-AAUG-01 17 63052667 63052667 G A GNA13 Silent p.F15F 0.03 TCGA-XD-AAUG-01 17 7578469 7578469 C A TP53 Missense_Mutation p.G154V 0.06 deleterious(0) probably_damaging(0.961) TCGA-XD-AAUG-01 18 48447031 48447031 G A ME2 Missense_Mutation p.G282E 0.05 deleterious(0) probably_damaging(1) TCGA-XD-AAUG-01 18 48447459 48447459 G A ME2 Missense_Mutation p.A320T 0.05 deleterious(0) probably_damaging(1) TCGA-XD-AAUG-01 19 52249834 52249834 G A FPR1 Silent p.T138T 0.06 TCGA-XD-AAUG-01 1 158636124 158636124 C T SPTA1 Silent p.S734S 0.05 TCGA-XD-AAUG-01 20 17956442 17956442 C - MGME1 Frame_Shift_Del p.Q210Sfs*4 0.08 TCGA-XD-AAUG-01 20 30432696 30432696 G T FOXS1 Missense_Mutation p.A217E 0.07 deleterious(0) possibly_damaging(0.504) TCGA-XD-AAUG-01 20 62839389 62839389 A G MYT1 Silent p.E280E 0.15 TCGA-XD-AAUG-01 2 101666884 101666884 T A TBC1D8 Missense_Mutation p.E269V 0.06 deleterious(0.01) possibly_damaging(0.696) TCGA-XD-AAUG-01 2 130877733 130877733 G A POTEF Missense_Mutation p.A119V 0.05 deleterious_low_confidence(0.04) possibly_damaging(0.449) TCGA-XD-AAUG-01 3 182733294 182733294 G A MCCC1 Nonsense_Mutation p.Q704* 0.07 TCGA-XD-AAUG-01 3 53223943 53223943 C A PRKCD Missense_Mutation p.H600N 0.03 deleterious(0.03) probably_damaging(1) TCGA-XD-AAUG-01 6 151669953 151669953 C A AKAP12 Missense_Mutation p.P143T 0.03 deleterious(0.02) probably_damaging(0.984) TCGA-XD-AAUG-01 6 31964233 31964233 T C C4A Missense_Mutation p.F1178L 0.06 tolerated(0.05) possibly_damaging(0.767) TCGA-XD-AAUG-01 7 100320819 100320819 T C EPO 3'UTR 0.49 TCGA-XD-AAUG-01 7 99057763 99057763 A T PTCD1 Missense_Mutation p.W23R 0.05 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-XD-AAUG-01 8 23290634 23290634 G A ENTPD4 Silent p.H552H 0.04 TCGA-XD-AAUG-01 9 136298550 136298550 C T ADAMTS13 Missense_Mutation p.A382V 0.04 tolerated(0.79) benign(0.001) TCGA-XD-AAUG-01 9 16435989 16435989 C T BNC2 Missense_Mutation p.E735K 0.03 tolerated(0.34) benign(0.016) TCGA-XD-AAUG-01 X 125686333 125686333 G A DCAF12L1 Silent p.L87L 0.03 TCGA-XD-AAUH-01 11 68549244 68549244 G A CPT1A Silent p.Y449Y 0.04 TCGA-XD-AAUH-01 11 93088643 93088643 C T CCDC67 Nonsense_Mutation p.R46* 0.05 TCGA-XD-AAUH-01 12 130185196 130185196 G A TMEM132D Silent p.L43L 0.05 TCGA-XD-AAUH-01 12 85674140 85674140 C T ALX1 Missense_Mutation p.T34M 0.04 deleterious_low_confidence(0) possibly_damaging(0.65) TCGA-XD-AAUH-01 15 63054530 63054530 G A TLN2 Silent p.S1613S 0.04 TCGA-XD-AAUH-01 15 69238075 69238075 G A SPESP1 Missense_Mutation p.A68T 0.04 tolerated(0.23) benign(0.051) TCGA-XD-AAUH-01 16 15931828 15931828 C T MYH11 Silent p.T94T 0.03 TCGA-XD-AAUH-01 16 28909687 28909687 G A ATP2A1 Missense_Mutation p.R560H 0.05 deleterious(0.01) possibly_damaging(0.553) TCGA-XD-AAUH-01 16 30978877 30978877 G A SETD1A Missense_Mutation p.R913H 0.05 possibly_damaging(0.84) TCGA-XD-AAUH-01 16 50128699 50128699 T C HEATR3 Missense_Mutation p.S532P 0.03 tolerated(0.65) benign(0) TCGA-XD-AAUH-01 19 17945947 17945947 C T JAK3 Silent p.P664P 0.04 TCGA-XD-AAUH-01 19 49245081 49245081 G C IZUMO1 Missense_Mutation p.S240C 0.04 deleterious(0.01) probably_damaging(0.936) TCGA-XD-AAUH-01 1 27688114 27688115 - GC MAP3K6 Frame_Shift_Ins p.L528Rfs*6 0.09 TCGA-XD-AAUH-01 21 38884243 38884243 T A DYRK1A Silent p.G567G 0.04 TCGA-XD-AAUH-01 2 43939401 43939401 A G PLEKHH2 Missense_Mutation p.D780G 0.03 deleterious(0) possibly_damaging(0.767) TCGA-XD-AAUH-01 3 62257096 62257096 G T PTPRG Missense_Mutation p.R1016S 0.04 deleterious(0) probably_damaging(0.997) TCGA-XD-AAUH-01 3 9036070 9036070 C T SRGAP3 Missense_Mutation p.V789M 0.03 tolerated(0.1) probably_damaging(0.999) TCGA-XD-AAUH-01 6 169622382 169622382 G A THBS2 Silent p.S1061S 0.06 TCGA-XD-AAUH-01 7 21631113 21631113 C T DNAH11 Missense_Mutation p.T862I 0.05 benign(0.005) TCGA-XD-AAUH-01 7 41729994 41729994 G A INHBA Nonsense_Mutation p.Q179* 0.06 TCGA-XD-AAUH-01 7 76825927 76825927 A T FGL2 Nonsense_Mutation p.L330* 0.03 TCGA-XD-AAUH-01 9 72920223 72920223 T G SMC5 Missense_Mutation p.L509V 0.03 deleterious(0.01) possibly_damaging(0.868) TCGA-XD-AAUI-01 10 13736001 13736001 G A FRMD4A Silent p.A338A 0.15 TCGA-XD-AAUI-01 10 50857681 50857681 C T CHAT Nonsense_Mutation p.R504* 0.12 TCGA-XD-AAUI-01 11 113661000 113661000 G A ATF4P4 RNA 0.17 TCGA-XD-AAUI-01 11 3704600 3704600 G A NUP98 Missense_Mutation p.A1583V 0.06 tolerated(0.28) possibly_damaging(0.641) TCGA-XD-AAUI-01 12 122623075 122623075 C - MLXIP Frame_Shift_Del p.I787Mfs*30 0.16 TCGA-XD-AAUI-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.12 deleterious(0) possibly_damaging(0.479) TCGA-XD-AAUI-01 12 2929953 2929953 G T ITFG2 Missense_Mutation p.G204C 0.06 deleterious(0) probably_damaging(1) TCGA-XD-AAUI-01 12 94641698 94641698 C T PLXNC1 Missense_Mutation p.A803V 0.04 tolerated(0.21) benign(0.129) TCGA-XD-AAUI-01 13 95034762 95034762 C T GPC6 Missense_Mutation p.T416M 0.09 tolerated(0.07) benign(0.025) TCGA-XD-AAUI-01 14 102698927 102698927 C T MOK Missense_Mutation p.D271N 0.08 tolerated(0.11) probably_damaging(0.991) TCGA-XD-AAUI-01 14 51387719 51387719 G A PYGL Missense_Mutation p.R243C 0.06 deleterious(0) probably_damaging(0.995) TCGA-XD-AAUI-01 14 65210050 65210050 C T PLEKHG3 Missense_Mutation p.R1041C 0.08 deleterious(0) possibly_damaging(0.843) TCGA-XD-AAUI-01 15 33895400 33895400 G A RYR3 Missense_Mutation p.D667N 0.06 probably_damaging(1) TCGA-XD-AAUI-01 15 34130000 34130000 C A RYR3 Missense_Mutation p.S3940Y 0.07 probably_damaging(0.99) TCGA-XD-AAUI-01 16 2162878 2162878 G A PKD1 Silent p.V1024V 0.07 TCGA-XD-AAUI-01 16 88706390 88706390 G A IL17C Silent p.S168S 0.06 TCGA-XD-AAUI-01 17 11725368 11725368 C T DNAH9 Nonsense_Mutation p.R2947* 0.11 TCGA-XD-AAUI-01 17 30374829 30374829 A G LRRC37B Silent p.L764L 0.10 TCGA-XD-AAUI-01 17 38320039 38320039 C T CASC3 Missense_Mutation p.P364L 0.04 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XD-AAUI-01 17 56083794 56083794 G C SRSF1 Missense_Mutation p.R97G 0.11 tolerated(0.82) benign(0.021) TCGA-XD-AAUI-01 17 65925454 65925454 G A BPTF Missense_Mutation p.V2001I 0.05 benign(0.084) TCGA-XD-AAUI-01 17 66979885 66979885 G A ABCA9 Silent p.I1535I 0.14 TCGA-XD-AAUI-01 17 66979974 66979974 G A ABCA9 Nonsense_Mutation p.Q1506* 0.10 TCGA-XD-AAUI-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.15 deleterious(0) probably_damaging(1) TCGA-XD-AAUI-01 18 28710559 28710559 C G DSC1 Missense_Mutation p.R868P 0.07 deleterious(0.01) benign(0.283) TCGA-XD-AAUI-01 1 11193143 11193143 C G MTOR Missense_Mutation p.W1786C 0.08 deleterious(0.04) benign(0.025) TCGA-XD-AAUI-01 1 228596786 228596786 C T TRIM17 Intron 0.04 TCGA-XD-AAUI-01 20 5585066 5585066 G T GPCPD1 5'UTR 0.04 TCGA-XD-AAUI-01 21 31654596 31654596 G A KRTAP24-1 Nonsense_Mutation p.R219* 0.03 TCGA-XD-AAUI-01 2 141533746 141533746 G A LRP1B Silent p.D1807D 0.13 TCGA-XD-AAUI-01 2 16086019 16086019 T A MYCN Missense_Mutation p.S399T 0.10 tolerated(0.05) probably_damaging(0.945) TCGA-XD-AAUI-01 2 167056341 167056341 A G SCN9A Missense_Mutation p.F1592S 0.10 deleterious(0.01) possibly_damaging(0.835) TCGA-XD-AAUI-01 2 168103840 168103840 A C XIRP2 Missense_Mutation p.K1980Q 0.06 benign(0.012) TCGA-XD-AAUI-01 2 202172323 202172323 G A ALS2CR12 Silent p.F266F 0.05 TCGA-XD-AAUI-01 2 45233480 45233480 C T SIX2 Silent p.P235P 0.05 TCGA-XD-AAUI-01 2 48066031 48066031 C T FBXO11 Missense_Mutation p.R185H 0.13 deleterious(0) possibly_damaging(0.895) TCGA-XD-AAUI-01 3 112998688 112998688 C T BOC Nonsense_Mutation p.R680* 0.06 TCGA-XD-AAUI-01 3 154018839 154018839 T A DHX36 Missense_Mutation p.K432I 0.13 deleterious(0.04) possibly_damaging(0.564) TCGA-XD-AAUI-01 3 154018849 154018849 T C DHX36 Missense_Mutation p.R429G 0.13 tolerated(0.05) benign(0.013) TCGA-XD-AAUI-01 3 52829637 52829637 G A ITIH3 Missense_Mutation p.G38R 0.16 tolerated(0.54) benign(0.001) TCGA-XD-AAUI-01 5 19838947 19838947 C T CDH18 Missense_Mutation p.R50H 0.08 deleterious(0) probably_damaging(0.98) TCGA-XD-AAUI-01 6 74104815 74104815 G A DDX43 Missense_Mutation p.A63T 0.06 tolerated(0.28) benign(0.016) TCGA-XD-AAUI-01 8 121243763 121243763 G A COL14A1 Missense_Mutation p.R752Q 0.04 tolerated(0.22) benign(0.076) TCGA-XD-AAUI-01 9 114982442 114982442 T C PTBP3 3'UTR 0.17 TCGA-XD-AAUI-01 9 34971545 34971545 G A KIAA1045 Missense_Mutation p.D84N 0.06 deleterious(0) probably_damaging(0.999) TCGA-XD-AAUI-01 X 105150491 105150491 C G NRK Missense_Mutation p.H310Q 0.07 deleterious(0) possibly_damaging(0.471) TCGA-XD-AAUI-01 X 133549256 133549256 G A PHF6 Intron 0.06 TCGA-XD-AAUI-01 X 153295765 153295765 C - MECP2 3'UTR 0.11 TCGA-XD-AAUI-01 X 41029282 41029282 C T USP9X Nonsense_Mutation p.R891* 0.07 TCGA-XD-AAUI-01 X 73061360 73061360 T C XIST RNA 0.10 TCGA-XD-AAUI-01 X 77528527 77528527 G T CYSLTR1 Silent p.T239T 0.04 TCGA-XD-AAUI-01 X 99551638 99551638 C G PCDH19 Missense_Mutation p.E1028D 0.04 tolerated(0.5) benign(0.008) TCGA-XD-AAUL-01 10 129213435 129213435 C T DOCK1 Missense_Mutation p.T1462I 0.12 deleterious(0.01) possibly_damaging(0.72) TCGA-XD-AAUL-01 10 5791188 5791188 A G FAM208B Missense_Mutation p.K1935R 0.12 tolerated(0.26) benign(0.012) TCGA-XD-AAUL-01 10 96018889 96018889 G A PLCE1 Missense_Mutation p.D1266N 0.15 tolerated(0.12) benign(0.043) TCGA-XD-AAUL-01 11 73067381 73067381 C T ARHGEF17 Silent p.I1275I 0.15 TCGA-XD-AAUL-01 12 110234507 110234507 G T TRPV4 Silent p.I385I 0.04 TCGA-XD-AAUL-01 12 113831803 113831803 G A SDS Silent p.G224G 0.18 TCGA-XD-AAUL-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.11 deleterious(0.03) benign(0.376) TCGA-XD-AAUL-01 12 49426114 49426114 G A KMT2D Missense_Mutation p.S4125F 0.16 unknown(0) TCGA-XD-AAUL-01 12 63991686 63991686 C T DPY19L2 Missense_Mutation p.R455H 0.15 tolerated(1) benign(0.002) TCGA-XD-AAUL-01 14 106320735 106320735 C T IGHM Missense_Mutation p.A359T 0.13 deleterious(0.02) possibly_damaging(0.5) TCGA-XD-AAUL-01 14 70634978 70634978 G T SLC8A3 Nonsense_Mutation p.C54* 0.19 TCGA-XD-AAUL-01 15 58476236 58476236 C G AQP9 Missense_Mutation p.L264V 0.18 tolerated(0.07) benign(0.019) TCGA-XD-AAUL-01 16 26147120 26147120 A G HS3ST4 Missense_Mutation p.I308V 0.14 tolerated(0.06) possibly_damaging(0.68) TCGA-XD-AAUL-01 16 69368489 69368489 G A RP11-343C2.12 Missense_Mutation p.R96C 0.19 deleterious(0) probably_damaging(0.999) TCGA-XD-AAUL-01 17 46154400 46154400 G A CBX1 5'UTR 0.19 TCGA-XD-AAUL-01 17 6945697 6945697 G A SLC16A11 Silent p.H268H 0.18 TCGA-XD-AAUL-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.22 deleterious(0) probably_damaging(1) TCGA-XD-AAUL-01 19 12826533 12826533 C T TNPO2 Missense_Mutation p.A116T 0.10 tolerated(0.26) benign(0.019) TCGA-XD-AAUL-01 1 109270590 109270590 G A FNDC7 Silent p.S424S 0.14 TCGA-XD-AAUL-01 1 214557484 214557484 G A PTPN14 Missense_Mutation p.R572W 0.19 tolerated(0.17) benign(0.386) TCGA-XD-AAUL-01 1 45796949 45796949 C - MUTYH Frame_Shift_Del p.E458Kfs*6 0.20 TCGA-XD-AAUL-01 1 78430650 78430650 G T FUBP1 Silent p.R214R 0.06 TCGA-XD-AAUL-01 22 20457064 20457064 C T RIMBP3 Missense_Mutation p.G1413E 0.16 tolerated(0.11) benign(0.397) TCGA-XD-AAUL-01 22 50472798 50472798 A G TTLL8 Missense_Mutation p.S359P 0.20 deleterious(0) probably_damaging(1) TCGA-XD-AAUL-01 2 201437658 201437658 A G SGOL2 Silent p.Q863Q 0.03 TCGA-XD-AAUL-01 2 210560818 210560818 C T MAP2 Silent p.S1308S 0.14 TCGA-XD-AAUL-01 2 230724186 230724186 T G TRIP12 Missense_Mutation p.N68T 0.15 tolerated_low_confidence(0.17) benign(0.011) TCGA-XD-AAUL-01 2 3392315 3392315 C T TRAPPC12 Silent p.N307N 0.13 TCGA-XD-AAUL-01 3 130189737 130189737 C T COL6A5 Silent p.T2500T 0.19 TCGA-XD-AAUL-01 3 187447157 187447157 C T BCL6 Missense_Mutation p.E346K 0.15 deleterious(0) probably_damaging(0.997) TCGA-XD-AAUL-01 3 3078896 3078896 C T CNTN4 Missense_Mutation p.A659V 0.14 deleterious(0) probably_damaging(0.96) TCGA-XD-AAUL-01 3 44943132 44943132 C A TGM4 Missense_Mutation p.N258K 0.15 tolerated(1) benign(0.002) TCGA-XD-AAUL-01 3 9490247 9490247 C A SETD5 Nonsense_Mutation p.S760* 0.13 TCGA-XD-AAUL-01 4 155843 155843 C T ZNF718 RNA 0.16 TCGA-XD-AAUL-01 4 7691260 7691260 C T SORCS2 Silent p.Y512Y 0.15 TCGA-XD-AAUL-01 4 79847790 79847790 G T PAQR3 Missense_Mutation p.T196K 0.15 tolerated(0.06) benign(0.007) TCGA-XD-AAUL-01 5 19839078 19839078 T A CDH18 Silent p.T6T 0.15 TCGA-XD-AAUL-01 6 7326976 7326976 C A CAGE1 3'UTR 0.18 TCGA-XD-AAUL-01 7 99720455 99720455 G C CNPY4 Missense_Mutation p.V131L 0.14 deleterious(0) probably_damaging(0.997) TCGA-XD-AAUL-01 8 68658419 68658419 G T CPA6 5'UTR 0.19 TCGA-XD-AAUL-01 9 121929760 121929760 G A BRINP1 Nonsense_Mutation p.R630* 0.22 TCGA-XD-AAUL-01 X 119575595 119575595 C T LAMP2 Silent p.K361K 0.30 TCGA-XD-AAUL-01 X 83129622 83129622 C A CYLC1 Missense_Mutation p.P636T 0.20 deleterious(0) probably_damaging(0.909) TCGA-XN-A8T3-01 10 93786913 93786913 G T BTAF1 Missense_Mutation p.L1754F 0.15 deleterious(0) probably_damaging(0.998) TCGA-XN-A8T3-01 11 58379764 58379764 C T ZFP91 Nonsense_Mutation p.R291* 0.10 TCGA-XN-A8T3-01 12 113624632 113624632 C T RITA1 Silent p.V27V 0.19 TCGA-XN-A8T3-01 12 132426520 132426520 G A PUS1 Missense_Mutation p.G410S 0.09 tolerated_low_confidence(0.31) benign(0.004) TCGA-XN-A8T3-01 12 2062397 2062397 T C DCP1B Missense_Mutation p.K237E 0.12 deleterious(0.01) benign(0.317) TCGA-XN-A8T3-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.21 deleterious(0) benign(0.361) TCGA-XN-A8T3-01 13 113826319 113826319 C T PROZ Missense_Mutation p.T390M 0.19 deleterious(0) probably_damaging(0.999) TCGA-XN-A8T3-01 13 23869565 23869565 G A SGCG Missense_Mutation p.A173T 0.18 tolerated(0.19) probably_damaging(1) TCGA-XN-A8T3-01 13 47409499 47409499 G A HTR2A Missense_Mutation p.R297W 0.16 deleterious(0.03) probably_damaging(0.997) TCGA-XN-A8T3-01 13 52548807 52548807 G A ATP7B Silent p.A183A 0.15 TCGA-XN-A8T3-01 15 97326798 97326798 C T SPATA8 5'UTR 0.18 TCGA-XN-A8T3-01 17 39412064 39412064 G A KRTAP9-9 Missense_Mutation p.A143T 0.08 tolerated(0.85) possibly_damaging(0.794) TCGA-XN-A8T3-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.15 deleterious(0) probably_damaging(0.998) TCGA-XN-A8T3-01 19 2076887 2076887 C T MOB3A Missense_Mutation p.V183M 0.08 deleterious(0.04) probably_damaging(0.977) TCGA-XN-A8T3-01 19 3785196 3785196 C T MATK Intron 0.16 TCGA-XN-A8T3-01 19 55143067 55143068 - A LILRB1 Frame_Shift_Ins p.K65Efs*38 0.12 TCGA-XN-A8T3-01 19 57985561 57985561 C T ZNF772 Missense_Mutation p.S184N 0.07 tolerated(0.3) benign(0.003) TCGA-XN-A8T3-01 1 109756576 109756576 A T SARS 5'UTR 0.08 TCGA-XN-A8T3-01 1 152383339 152383339 T C CRNN Silent p.E73E 0.05 TCGA-XN-A8T3-01 1 17958842 17958842 G A ARHGEF10L Silent p.L537L 0.15 TCGA-XN-A8T3-01 1 228432014 228432014 G T OBSCN Missense_Mutation p.A1167S 0.09 benign(0.055) TCGA-XN-A8T3-01 1 248344093 248344093 C T OR2M2 Missense_Mutation p.T269M 0.17 tolerated(0.08) benign(0.223) TCGA-XN-A8T3-01 1 248524891 248524891 C T OR2T4 Silent p.N3N 0.12 TCGA-XN-A8T3-01 1 94466426 94466426 G A ABCA4 Nonsense_Mutation p.R2149* 0.12 TCGA-XN-A8T3-01 22 18606952 18606952 C T TUBA8 Missense_Mutation p.L86F 0.08 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-XN-A8T3-01 22 22868515 22868515 C T ZNF280A Silent p.P480P 0.09 TCGA-XN-A8T3-01 22 23135323 23135323 G A IGLV2-11 Missense_Mutation p.G62D 0.08 deleterious_low_confidence(0.03) benign(0.397) TCGA-XN-A8T3-01 22 30766541 30766541 C T CCDC157 Missense_Mutation p.T216M 0.10 deleterious(0) probably_damaging(0.998) TCGA-XN-A8T3-01 22 37333569 37333569 G A CSF2RB Silent p.P573P 0.14 TCGA-XN-A8T3-01 2 131521308 131521308 G - AMER3 Frame_Shift_Del p.A557Rfs*127 0.10 TCGA-XN-A8T3-01 2 170361511 170361511 A G BBS5 3'UTR 0.18 TCGA-XN-A8T3-01 2 179583118 179583118 C T TTN Missense_Mutation p.A8239T 0.14 TCGA-XN-A8T3-01 2 18766145 18766145 G T NT5C1B Missense_Mutation p.P180T 0.09 tolerated_low_confidence(0.16) benign(0.002) TCGA-XN-A8T3-01 2 191847210 191847210 C T STAT1 Missense_Mutation p.R494Q 0.09 tolerated(0.13) benign(0.011) TCGA-XN-A8T3-01 2 90229521 90229521 T A IGKV1D-42 Missense_Mutation p.F114Y 0.14 tolerated(1) benign(0.001) TCGA-XN-A8T3-01 3 10858068 10858068 C T SLC6A11 Missense_Mutation p.R40C 0.11 tolerated(0.06) possibly_damaging(0.689) TCGA-XN-A8T3-01 3 173998609 173998609 G A NLGN1 Missense_Mutation p.S663N 0.07 tolerated(0.43) benign(0.056) TCGA-XN-A8T3-01 3 73432928 73432928 G A PDZRN3 Missense_Mutation p.T930M 0.13 deleterious(0) probably_damaging(0.978) TCGA-XN-A8T3-01 3 8669466 8669466 G A SSUH2 Missense_Mutation p.R198W 0.13 deleterious(0) probably_damaging(0.967) TCGA-XN-A8T3-01 4 100830014 100830014 T C DNAJB14 Missense_Mutation p.K164R 0.09 deleterious(0.02) probably_damaging(0.995) TCGA-XN-A8T3-01 4 121739540 121739540 C A PRDM5 Missense_Mutation p.K206N 0.12 deleterious(0) probably_damaging(0.997) TCGA-XN-A8T3-01 5 158526643 158526643 G A EBF1 5'UTR 0.13 TCGA-XN-A8T3-01 5 422893 422893 G A AHRR Missense_Mutation p.R168H 0.17 deleterious(0) probably_damaging(1) TCGA-XN-A8T3-01 5 61699154 61699154 C A DIMT1 Silent p.G33G 0.14 TCGA-XN-A8T3-01 5 79025398 79025398 G A CMYA5 Silent p.E270E 0.07 TCGA-XN-A8T3-01 6 25972146 25972146 T G TRIM38 Missense_Mutation p.L186R 0.09 deleterious(0) probably_damaging(0.98) TCGA-XN-A8T3-01 6 32049954 32049954 G A RNA5SP206 5'Flank 0.25 TCGA-XN-A8T3-01 6 55216353 55216353 C T GFRAL Missense_Mutation p.R225C 0.06 deleterious(0) possibly_damaging(0.67) TCGA-XN-A8T3-01 7 150775665 150775665 G A FASTK Missense_Mutation p.T270M 0.23 deleterious(0.01) benign(0.004) TCGA-XN-A8T3-01 7 38725296 38725296 G A FAM183B Missense_Mutation p.R104C 0.27 tolerated(0.06) benign(0.047) TCGA-XN-A8T3-01 8 105257203 105257203 G A RIMS2 Missense_Mutation p.V1132M 0.15 deleterious_low_confidence(0) benign(0.335) TCGA-XN-A8T3-01 8 69552683 69552683 G A C8orf34 Missense_Mutation p.R393H 0.08 deleterious(0) probably_damaging(0.999) TCGA-XN-A8T3-01 9 36339793 36339793 T C RNF38 Missense_Mutation p.I502V 0.18 tolerated(0.06) possibly_damaging(0.616) TCGA-XN-A8T3-01 X 114540856 114540856 G A LUZP4 Silent p.P143P 0.17 TCGA-XN-A8T3-01 X 7268006 7268006 G A STS Missense_Mutation p.V486M 0.16 tolerated(0.09) probably_damaging(0.963) TCGA-XN-A8T5-01 10 43090109 43090109 C A ZNF33B Nonsense_Mutation p.E97* 0.03 TCGA-XN-A8T5-01 12 57871243 57871243 G A ARHGAP9 Missense_Mutation p.T252M 0.05 tolerated(0.22) benign(0.012) TCGA-XN-A8T5-01 13 92101122 92101122 A G GPC5 Missense_Mutation p.T91A 0.05 tolerated(0.38) benign(0.075) TCGA-XN-A8T5-01 16 22448619 22448619 C T RRN3P3 RNA 0.22 TCGA-XN-A8T5-01 16 7714957 7714957 G C RBFOX1 Intron 0.03 TCGA-XN-A8T5-01 16 85682180 85682180 G A GSE1 Silent p.S83S 0.05 TCGA-XN-A8T5-01 19 9005718 9005718 C T MUC16 Missense_Mutation p.G13230R 0.05 probably_damaging(0.988) TCGA-XN-A8T5-01 1 111825998 111825998 G A CHIAP2 RNA 0.04 TCGA-XN-A8T5-01 1 145567068 145567068 C T ANKRD35 Silent p.Y972Y 0.05 TCGA-XN-A8T5-01 1 158152716 158152716 G A CD1D Missense_Mutation p.R219H 0.06 tolerated(0.47) benign(0.014) TCGA-XN-A8T5-01 1 247655131 247655131 G A OR2W5 RNA 0.04 TCGA-XN-A8T5-01 22 50278645 50278645 C T ZBED4 Silent p.A445A 0.10 TCGA-XN-A8T5-01 22 50720348 50720348 C A PLXNB2 Missense_Mutation p.D1094Y 0.05 deleterious(0) probably_damaging(0.999) TCGA-XN-A8T5-01 2 144525606 144525606 G T ARHGAP15 Silent p.G431G 0.03 TCGA-XN-A8T5-01 3 149570341 149570341 C T RNF13 Silent p.L51L 0.06 TCGA-XN-A8T5-01 3 48716527 48716527 A T NCKIPSD Missense_Mutation p.C554S 0.05 deleterious(0.04) possibly_damaging(0.781) TCGA-XN-A8T5-01 5 167995848 167995848 C T PANK3 Missense_Mutation p.G62S 0.05 deleterious(0) probably_damaging(1) TCGA-XN-A8T5-01 5 70805902 70805902 A C BDP1 Silent p.R995R 0.04 TCGA-XN-A8T5-01 8 49647753 49647753 C T EFCAB1 5'UTR 0.05 TCGA-XN-A8T5-01 X 139047659 139047659 C T CXorf66 5'UTR 0.06 TCGA-XN-A8T5-01 X 151821056 151821056 C T GABRQ Missense_Mutation p.A404V 0.05 tolerated(0.38) benign(0.036) TCGA-YB-A89D-01 11 49192747 49192747 C T FOLH1 Silent p.E436E 0.06 TCGA-YB-A89D-01 11 88029368 88029368 T C CTSC Silent p.L274L 0.10 TCGA-YB-A89D-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.17 deleterious(0.03) benign(0.376) TCGA-YB-A89D-01 14 53518604 53518604 G T DDHD1 Missense_Mutation p.L827I 0.22 tolerated_low_confidence(0.07) possibly_damaging(0.46) TCGA-YB-A89D-01 16 30000991 30000991 A G TAOK2 3'Flank 0.17 TCGA-YB-A89D-01 16 30960680 30960680 T G ORAI3 Missense_Mutation p.S24A 0.24 tolerated(0.46) benign(0.097) TCGA-YB-A89D-01 18 48591918 48591918 C T SMAD4 Missense_Mutation p.R361C 0.22 deleterious(0) probably_damaging(1) TCGA-YB-A89D-01 19 58867557 58867557 C T ZNF497 Missense_Mutation p.R482H 0.19 tolerated(0.15) benign(0.108) TCGA-YB-A89D-01 1 16935273 16935273 G C NBPF1 Intron 0.13 TCGA-YB-A89D-01 1 41481629 41481629 G A SLFNL1 3'UTR 0.16 TCGA-YB-A89D-01 1 67337143 67337143 C A WDR78 Missense_Mutation p.D284Y 0.09 deleterious(0) probably_damaging(0.996) TCGA-YB-A89D-01 20 60511971 60511971 G A CDH4 Silent p.A907A 0.04 TCGA-YB-A89D-01 22 26219559 26219559 C T MYO18B Missense_Mutation p.T870I 0.27 tolerated(0.58) possibly_damaging(0.846) TCGA-YB-A89D-01 22 39884255 39884255 C A MGAT3 Silent p.V301V 0.13 TCGA-YB-A89D-01 22 39884489 39884489 C T MGAT3 Silent p.I379I 0.12 TCGA-YB-A89D-01 22 39884636 39884636 C T MGAT3 Silent p.I428I 0.10 TCGA-YB-A89D-01 22 39884904 39884904 C T MGAT3 Missense_Mutation p.P518S 0.10 tolerated_low_confidence(0.77) benign(0) TCGA-YB-A89D-01 22 40662002 40662002 C T TNRC6B Missense_Mutation p.R590C 0.11 deleterious(0) probably_damaging(0.998) TCGA-YB-A89D-01 2 187370558 187370558 G T ZC3H15 Missense_Mutation p.G319V 0.07 tolerated(0.31) benign(0.303) TCGA-YB-A89D-01 2 98422018 98422018 G T TMEM131 Nonsense_Mutation p.S735* 0.03 TCGA-YB-A89D-01 3 172473162 172473162 A C ECT2 Missense_Mutation p.K70Q 0.10 tolerated(1) benign(0.002) TCGA-YB-A89D-01 3 25770651 25770651 G T NGLY1 Missense_Mutation p.F528L 0.03 deleterious(0.01) possibly_damaging(0.532) TCGA-YB-A89D-01 3 62268492 62268492 G A PTPRG Missense_Mutation p.V1335I 0.10 tolerated(0.73) benign(0.129) TCGA-YB-A89D-01 4 20525792 20525792 G A SLIT2 Missense_Mutation p.R477H 0.22 deleterious(0) probably_damaging(0.997) TCGA-YB-A89D-01 4 52960706 52960706 G A SPATA18 Missense_Mutation p.R526Q 0.19 deleterious(0.02) probably_damaging(0.947) TCGA-YB-A89D-01 5 140228096 140228096 C T PCDHA9 Nonsense_Mutation p.R6* 0.11 TCGA-YB-A89D-01 5 178552049 178552049 G A ADAMTS2 Silent p.D961D 0.10 TCGA-YB-A89D-01 5 34915017 34915017 C T RAD1 5'UTR 0.21 TCGA-YB-A89D-01 6 160202137 160202137 G A TCP1 Missense_Mutation p.S268L 0.11 tolerated(0.67) benign(0.011) TCGA-YB-A89D-01 7 95813702 95813702 C T SLC25A13 Missense_Mutation p.R356Q 0.20 deleterious(0) probably_damaging(0.993) TCGA-YB-A89D-01 7 95818680 95818680 A C SLC25A13 Missense_Mutation p.L287V 0.04 tolerated(0.1) benign(0.097) TCGA-YB-A89D-01 8 113256691 113256691 G A CSMD3 Missense_Mutation p.A3445V 0.10 tolerated(0.06) benign(0.062) TCGA-YB-A89D-01 8 27927120 27927120 C G NUGGC Missense_Mutation p.Q66H 0.18 deleterious(0) probably_damaging(0.979) TCGA-YB-A89D-01 8 55539537 55539537 A G RP1 Missense_Mutation p.N1032S 0.21 tolerated(0.32) benign(0.007) TCGA-YB-A89D-01 8 97263135 97263135 T A MTERFD1 Missense_Mutation p.R226W 0.19 deleterious(0) probably_damaging(1) TCGA-YB-A89D-01 9 21971096 21971096 C - CDKN2A Frame_Shift_Del p.E88Rfs*58 0.40 TCGA-YH-A8SY-01 10 116046089 116046089 C T VWA2 Silent p.G463G 0.13 TCGA-YH-A8SY-01 10 50966564 50966564 C T OGDHL Silent p.P25P 0.18 TCGA-YH-A8SY-01 11 1272055 1272055 G A MUC5B Missense_Mutation p.A4649T 0.12 unknown(0) TCGA-YH-A8SY-01 11 17758047 17758047 C T KCNC1 Silent p.G166G 0.22 TCGA-YH-A8SY-01 11 4674426 4674426 A T OR51E1 Missense_Mutation p.I224F 0.09 deleterious(0) probably_damaging(1) TCGA-YH-A8SY-01 11 5255672 5255672 T C HBD 5'UTR 0.22 TCGA-YH-A8SY-01 12 121221520 121221522 GGA - SPPL3 In_Frame_Del p.L115del 0.31 TCGA-YH-A8SY-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.21 deleterious(0) possibly_damaging(0.479) TCGA-YH-A8SY-01 13 53420520 53420520 G A PCDH8 Silent p.R684R 0.22 TCGA-YH-A8SY-01 13 58208913 58208913 G A PCDH17 Missense_Mutation p.A745T 0.13 deleterious(0.03) benign(0.423) TCGA-YH-A8SY-01 15 34040439 34040439 G T RYR3 Missense_Mutation p.R2705L 0.10 benign(0.11) TCGA-YH-A8SY-01 15 42695097 42695097 C T CAPN3 Missense_Mutation p.R548C 0.16 tolerated(0.18) benign(0.231) TCGA-YH-A8SY-01 15 90321695 90321696 - GAA MESP2 3'UTR 0.44 TCGA-YH-A8SY-01 16 2228602 2228602 G A CASKIN1 Silent p.I1415I 0.08 TCGA-YH-A8SY-01 16 3823809 3823809 G A CREBBP Silent p.S802S 0.20 TCGA-YH-A8SY-01 16 69197063 69197063 C T CIRH1A Silent p.I543I 0.09 TCGA-YH-A8SY-01 16 70713713 70713713 G A MTSS1L Nonsense_Mutation p.Q120* 0.14 TCGA-YH-A8SY-01 16 89347349 89347349 G A ANKRD11 Silent p.C1867C 0.08 TCGA-YH-A8SY-01 17 46670813 46670813 C T HOXB5 Missense_Mutation p.A78T 0.12 tolerated(0.36) benign(0.006) TCGA-YH-A8SY-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.19 tolerated(0.11) benign(0.308) TCGA-YH-A8SY-01 17 78519414 78519414 A T RPTOR 5'UTR 0.18 TCGA-YH-A8SY-01 19 42471441 42471441 G A ATP1A3 Silent p.Y1004Y 0.19 TCGA-YH-A8SY-01 1 115829176 115829176 G A NGF Nonsense_Mutation p.R81* 0.14 TCGA-YH-A8SY-01 1 119427285 119427285 A G TBX15 3'UTR 0.25 TCGA-YH-A8SY-01 1 18809344 18809344 C T KLHDC7A Silent p.F623F 0.11 TCGA-YH-A8SY-01 1 202568444 202568444 T G SYT2 Missense_Mutation p.K319Q 0.11 deleterious(0) probably_damaging(0.95) TCGA-YH-A8SY-01 1 215987140 215987140 C T USH2A Missense_Mutation p.R3226Q 0.22 benign(0.005) TCGA-YH-A8SY-01 1 240371129 240371129 C T FMN2 Missense_Mutation p.A1006V 0.09 unknown(0) TCGA-YH-A8SY-01 1 29543100 29543100 C A MECR Nonsense_Mutation p.G92* 0.19 TCGA-YH-A8SY-01 1 36807372 36807372 C T STK40 Missense_Mutation p.R431H 0.19 deleterious_low_confidence(0) possibly_damaging(0.813) TCGA-YH-A8SY-01 1 50642759 50642759 A G ELAVL4 Splice_Site p.X101_splice 0.10 TCGA-YH-A8SY-01 1 91739306 91739306 T A HFM1 Silent p.G1245G 0.09 TCGA-YH-A8SY-01 20 25442226 25442226 G A NINL Nonsense_Mutation p.Q1210* 0.19 TCGA-YH-A8SY-01 21 32185365 32185365 C T KRTAP8-1 Silent p.S58S 0.17 TCGA-YH-A8SY-01 21 32253572 32253572 C A KRTAP11-1 Missense_Mutation p.C91F 0.15 tolerated(0.1) probably_damaging(0.999) TCGA-YH-A8SY-01 21 37603002 37603002 G T DOPEY2 Missense_Mutation p.K640N 0.18 tolerated(0.06) possibly_damaging(0.856) TCGA-YH-A8SY-01 22 23980718 23980718 C G GUSBP11 RNA 0.09 TCGA-YH-A8SY-01 2 100210257 100210257 C T AFF3 Silent p.P647P 0.05 TCGA-YH-A8SY-01 2 1643096 1643096 T A PXDN Missense_Mutation p.T1351S 0.05 tolerated(1) benign(0) TCGA-YH-A8SY-01 2 27150261 27150261 C T DPYSL5 Silent p.I187I 0.24 TCGA-YH-A8SY-01 2 74742813 74742813 C T TLX2 Missense_Mutation p.R152W 0.15 deleterious(0) probably_damaging(0.982) TCGA-YH-A8SY-01 3 118913171 118913171 G T UPK1B Missense_Mutation p.V192F 0.16 tolerated(0.07) possibly_damaging(0.835) TCGA-YH-A8SY-01 3 140277663 140277663 G A CLSTN2 Missense_Mutation p.A669T 0.18 tolerated(1) benign(0.002) TCGA-YH-A8SY-01 3 182591715 182591715 C T ATP11B Missense_Mutation p.H722Y 0.15 deleterious(0.03) probably_damaging(0.995) TCGA-YH-A8SY-01 3 53810001 53810001 G T CACNA1D Nonsense_Mutation p.E1451* 0.04 TCGA-YH-A8SY-01 4 153691293 153691293 C T TIGD4 Silent p.E288E 0.16 TCGA-YH-A8SY-01 4 66230893 66230893 C T EPHA5 Missense_Mutation p.R693H 0.13 tolerated(0.07) possibly_damaging(0.735) TCGA-YH-A8SY-01 5 140481563 140481563 G A PCDHB3 Missense_Mutation p.V444I 0.07 tolerated_low_confidence(0.19) benign(0.026) TCGA-YH-A8SY-01 5 140712177 140712177 C T PCDHGA1 Silent p.L642L 0.09 TCGA-YH-A8SY-01 5 150050154 150050154 G A MYOZ3 Missense_Mutation p.R57H 0.13 deleterious(0) probably_damaging(0.993) TCGA-YH-A8SY-01 5 176308805 176308805 G A HK3 Missense_Mutation p.R761C 0.11 deleterious(0.01) probably_damaging(0.946) TCGA-YH-A8SY-01 5 179151711 179151728 GAAGGAAGAGGAAGAAGA - CANX In_Frame_Del p.E529_E534del 0.13 TCGA-YH-A8SY-01 5 179763567 179763567 G C GFPT2 Missense_Mutation p.I42M 0.18 deleterious(0.01) possibly_damaging(0.902) TCGA-YH-A8SY-01 5 63257304 63257304 G A HTR1A Silent p.T81T 0.22 TCGA-YH-A8SY-01 5 86672813 86672813 C A RASA1 Nonsense_Mutation p.S767* 0.14 TCGA-YH-A8SY-01 7 141418884 141418884 C T WEE2 Nonsense_Mutation p.R200* 0.18 TCGA-YH-A8SY-01 7 148876975 148876975 A G ZNF398 3'UTR 0.15 TCGA-YH-A8SY-01 7 66304550 66304550 T G GTF2IRD1P1 RNA 0.18 TCGA-YH-A8SY-01 7 71252645 71252645 C T CALN1 3'UTR 0.21 TCGA-YH-A8SY-01 7 7570984 7570984 G A COL28A1 Missense_Mutation p.R226C 0.15 deleterious(0) probably_damaging(1) TCGA-YH-A8SY-01 7 83029563 83029563 C T SEMA3E Missense_Mutation p.A383T 0.15 deleterious(0) probably_damaging(0.968) TCGA-YH-A8SY-01 8 143955785 143955785 G A CYP11B1 3'UTR 0.12 TCGA-YH-A8SY-01 8 144994097 144994097 G T PLEC Missense_Mutation p.L3435M 0.19 possibly_damaging(0.76) TCGA-YH-A8SY-01 8 38279439 38279439 G A FGFR1 Silent p.T350T 0.06 TCGA-YH-A8SY-01 8 55542948 55542949 - T RP1 3'UTR 0.15 TCGA-YH-A8SY-01 8 77617904 77617904 G A ZFHX4 Silent p.A527A 0.10 TCGA-YH-A8SY-01 X 112048243 112048243 G A AMOT Nonsense_Mutation p.R570* 0.16 TCGA-YH-A8SY-01 X 118725258 118725258 T A NKRF Nonsense_Mutation p.K59* 0.17 TCGA-YH-A8SY-01 X 12516909 12516909 T C FRMPD4 Missense_Mutation p.F51S 0.14 deleterious(0) benign(0.13) TCGA-YH-A8SY-01 X 132351883 132351883 G A TFDP3 Silent p.G135G 0.17 TCGA-YH-A8SY-01 X 153593084 153593084 A G FLNA Missense_Mutation p.F611S 0.14 deleterious(0) probably_damaging(0.966) TCGA-YH-A8SY-01 X 63410676 63410676 C T AMER1 Missense_Mutation p.D831N 0.26 tolerated(0.17) benign(0.007) TCGA-YY-A8LH-01 10 105037160 105037160 G A INA Silent p.L64L 0.23 TCGA-YY-A8LH-01 10 117226743 117226743 G A ATRNL1 Silent p.T1159T 0.06 TCGA-YY-A8LH-01 10 48388910 48388910 G A RBP3 Silent p.V656V 0.15 TCGA-YY-A8LH-01 10 99338074 99338074 C A ANKRD2 Silent p.I116I 0.21 TCGA-YY-A8LH-01 11 110108333 110108333 G A RDX Nonsense_Mutation p.R379* 0.08 TCGA-YY-A8LH-01 11 123524516 123524516 G C SCN3B 5'UTR 0.07 TCGA-YY-A8LH-01 12 124069169 124069169 G C TMED2 5'UTR 0.05 TCGA-YY-A8LH-01 12 130648711 130648711 C T FZD10 Silent p.I408I 0.22 TCGA-YY-A8LH-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.28 deleterious(0) possibly_damaging(0.479) TCGA-YY-A8LH-01 12 50847262 50847262 A G LARP4 Missense_Mutation p.N275S 0.30 deleterious(0) possibly_damaging(0.665) TCGA-YY-A8LH-01 12 56600246 56600246 G A RNF41 Silent p.G313G 0.07 TCGA-YY-A8LH-01 12 93803735 93803736 TG - UBE2N 3'UTR 0.30 TCGA-YY-A8LH-01 13 110857736 110857736 G A COL4A1 Silent p.P307P 0.23 TCGA-YY-A8LH-01 13 52585461 52585461 C A ATP7B Nonsense_Mutation p.E5* 0.21 TCGA-YY-A8LH-01 14 47426671 47426671 G A MDGA2 Silent p.Y665Y 0.03 TCGA-YY-A8LH-01 14 97319216 97319216 A G VRK1 Missense_Mutation p.I141M 0.07 tolerated(0.09) benign(0.132) TCGA-YY-A8LH-01 15 23049053 23049053 C T NIPA1 Missense_Mutation p.D256N 0.04 tolerated(1) benign(0.074) TCGA-YY-A8LH-01 17 10350494 10350494 C T MYH4 Missense_Mutation p.D1669N 0.11 tolerated(0.07) benign(0.166) TCGA-YY-A8LH-01 17 36091686 36091687 - AT HNF1B Frame_Shift_Ins p.M315Ifs*13 0.10 TCGA-YY-A8LH-01 17 56434978 56434978 G A RNF43 Missense_Mutation p.S720L 0.12 deleterious_low_confidence(0.03) benign(0.149) TCGA-YY-A8LH-01 17 56435357 56435359 GAG AA RNF43 Frame_Shift_Del p.S593Ffs*107 0.10 TCGA-YY-A8LH-01 17 56448366 56448366 C A RNF43 Missense_Mutation p.S94I 0.35 deleterious(0) probably_damaging(0.999) TCGA-YY-A8LH-01 17 7416998 7416998 C T POLR2A Silent p.S1805S 0.12 TCGA-YY-A8LH-01 17 8216367 8216367 G A ARHGEF15 Silent p.P243P 0.04 TCGA-YY-A8LH-01 18 30846964 30846964 A G CCDC178 Missense_Mutation p.I442T 0.07 tolerated(0.12) benign(0.35) TCGA-YY-A8LH-01 18 44559687 44559687 G A TCEB3B Missense_Mutation p.T650M 0.30 deleterious(0.03) probably_damaging(0.976) TCGA-YY-A8LH-01 19 12575884 12575884 T C ZNF709 Silent p.Q284Q 0.34 TCGA-YY-A8LH-01 19 1270152 1270152 C T CIRBP Intron 0.34 TCGA-YY-A8LH-01 19 13039582 13039582 C T FARSA Missense_Mutation p.E195K 0.21 deleterious(0) possibly_damaging(0.844) TCGA-YY-A8LH-01 19 22171676 22171676 G T ZNF208 Missense_Mutation p.F13L 0.03 tolerated(0.06) benign(0.073) TCGA-YY-A8LH-01 19 30936183 30936183 G T ZNF536 Missense_Mutation p.D572Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-YY-A8LH-01 19 46417571 46417571 G A NANOS2 Silent p.S127S 0.08 TCGA-YY-A8LH-01 19 55676757 55676757 C T DNAAF3 Silent p.P169P 0.04 TCGA-YY-A8LH-01 19 9058858 9058858 C G MUC16 Missense_Mutation p.E9530Q 0.03 unknown(0) TCGA-YY-A8LH-01 1 103427802 103427802 C G COL11A1 Missense_Mutation p.G1015A 0.31 unknown(0) TCGA-YY-A8LH-01 1 1404113 1404113 G C ATAD3C 3'UTR 0.08 TCGA-YY-A8LH-01 1 153789912 153789912 G A GATAD2B Missense_Mutation p.P279L 0.26 tolerated(0.87) benign(0.003) TCGA-YY-A8LH-01 1 156824033 156824033 C T INSRR Missense_Mutation p.V50M 0.39 deleterious(0.01) possibly_damaging(0.515) TCGA-YY-A8LH-01 1 231339749 231339749 A G TRIM67 Silent p.G557G 0.15 TCGA-YY-A8LH-01 1 27099950 27099950 C T ARID1A Nonsense_Mutation p.Q1277* 0.42 TCGA-YY-A8LH-01 1 55470697 55470697 C T BSND Silent p.I60I 0.41 TCGA-YY-A8LH-01 22 19035956 19035956 G A DGCR2 Missense_Mutation p.P335S 0.03 deleterious(0.05) probably_damaging(0.971) TCGA-YY-A8LH-01 22 19794255 19794255 T A GNB1L Missense_Mutation p.K148M 0.09 deleterious(0.01) possibly_damaging(0.687) TCGA-YY-A8LH-01 22 40797636 40797636 C G SGSM3 Missense_Mutation p.T16S 0.32 deleterious(0.04) benign(0.437) TCGA-YY-A8LH-01 2 179440550 179440550 C T TTN Missense_Mutation p.G23437S 0.05 TCGA-YY-A8LH-01 2 230377562 230377562 C T DNER Missense_Mutation p.A362T 0.07 deleterious(0) possibly_damaging(0.49) TCGA-YY-A8LH-01 2 37458834 37458834 C T NDUFAF7 5'UTR 0.18 TCGA-YY-A8LH-01 2 71148347 71148347 C T VAX2 Missense_Mutation p.R123C 0.09 deleterious(0) probably_damaging(0.946) TCGA-YY-A8LH-01 3 11058924 11058924 C T SLC6A1 Silent p.A9A 0.04 TCGA-YY-A8LH-01 3 125279224 125279224 C A OSBPL11 Missense_Mutation p.R385I 0.08 deleterious(0) probably_damaging(0.979) TCGA-YY-A8LH-01 3 37154441 37154441 T C LRRFIP2 Missense_Mutation p.K135E 0.27 tolerated(0.09) benign(0.217) TCGA-YY-A8LH-01 4 2355738 2355738 G A ZFYVE28 Silent p.A34A 0.14 TCGA-YY-A8LH-01 4 39512385 39512385 T C UGDH Missense_Mutation p.N121D 0.30 tolerated(0.44) benign(0.002) TCGA-YY-A8LH-01 4 89414249 89414249 G A HERC5 Silent p.P740P 0.08 TCGA-YY-A8LH-01 5 11364949 11364949 G A CTNND2 Missense_Mutation p.R411W 0.20 deleterious(0) probably_damaging(0.929) TCGA-YY-A8LH-01 5 127624885 127624885 C T FBN2 Missense_Mutation p.D2191N 0.04 deleterious(0) possibly_damaging(0.477) TCGA-YY-A8LH-01 5 135692940 135692940 G A TRPC7 Missense_Mutation p.R46C 0.04 deleterious(0) possibly_damaging(0.556) TCGA-YY-A8LH-01 5 140229544 140229544 C G PCDHA9 Silent p.A488A 0.23 TCGA-YY-A8LH-01 5 172660081 172660081 G A NKX2-5 Missense_Mutation p.R156C 0.10 deleterious(0) probably_damaging(0.993) TCGA-YY-A8LH-01 5 93856355 93856355 A G KIAA0825 Silent p.L190L 0.07 TCGA-YY-A8LH-01 6 102266347 102266347 A T GRIK2 Missense_Mutation p.T436S 0.06 tolerated(0.13) benign(0.006) TCGA-YY-A8LH-01 6 102266348 102266348 C T GRIK2 Missense_Mutation p.T436I 0.06 tolerated(0.09) possibly_damaging(0.673) TCGA-YY-A8LH-01 6 79711802 79711802 G A PHIP Missense_Mutation p.L565F 0.09 deleterious(0) benign(0.301) TCGA-YY-A8LH-01 7 100276124 100276124 A T GNB2 Missense_Mutation p.N268I 0.23 deleterious(0.01) possibly_damaging(0.583) TCGA-YY-A8LH-01 7 103180786 103180786 T - RELN Frame_Shift_Del p.E2263Gfs*20 0.10 TCGA-YY-A8LH-01 7 149503953 149503953 G T SSPO RNA 0.22 TCGA-YY-A8LH-01 7 48317894 48317894 C T ABCA13 Missense_Mutation p.A2368V 0.15 benign(0.005) TCGA-YY-A8LH-01 7 92764937 92764937 T C SAMD9L Silent p.S116S 0.31 TCGA-YY-A8LH-01 7 94039063 94039063 G A COL1A2 Missense_Mutation p.G322D 0.07 unknown(0) TCGA-YY-A8LH-01 8 11995011 11995011 A T USP17L2 Nonsense_Mutation p.L420* 0.05 TCGA-YY-A8LH-01 8 143957228 143957228 G A CYP11B1 Missense_Mutation p.R341C 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-YY-A8LH-01 8 22054897 22054897 G A BMP1 Missense_Mutation p.V691M 0.03 deleterious(0.01) probably_damaging(0.994) TCGA-YY-A8LH-01 8 89053574 89053574 C A MMP16 3'UTR 0.08 TCGA-YY-A8LH-01 9 114090184 114090184 G A OR2K2 Missense_Mutation p.T177M 0.04 deleterious(0.04) possibly_damaging(0.529) TCGA-YY-A8LH-01 9 133355188 133355188 G A ASS1 Splice_Site p.X258_splice 0.08 TCGA-YY-A8LH-01 9 4618865 4618865 T - SPATA6L Frame_Shift_Del p.K211Rfs*12 0.19 TCGA-YY-A8LH-01 X 130215846 130215846 C A ARHGAP36 Missense_Mutation p.H69Q 0.05 tolerated(0.35) benign(0.003) TCGA-YY-A8LH-01 X 132445300 132445300 C A GPC4 Missense_Mutation p.W288L 0.06 deleterious(0) possibly_damaging(0.61) TCGA-YY-A8LH-01 X 137793125 137793125 C G FGF13 Intron 0.03 TCGA-YY-A8LH-01 X 146341246 146341246 C A MIR509-1 3'Flank 0.25 TCGA-YY-A8LH-01 X 150817142 150817142 G A PASD1 Missense_Mutation p.A229T 0.48 tolerated(0.54) benign(0.01) TCGA-YY-A8LH-01 X 153735118 153735118 G A FAM3A 3'UTR 0.17 TCGA-YY-A8LH-01 X 26213024 26213024 G A MAGEB6 Missense_Mutation p.C354Y 0.06 tolerated(0.42) benign(0.004) TCGA-YY-A8LH-01 X 39922163 39922163 C T BCOR Missense_Mutation p.E1337K 0.06 tolerated(0.11) benign(0.317) TCGA-YY-A8LH-01 X 39934126 39934127 - T BCOR Frame_Shift_Ins p.S158Kfs*28 0.42 TCGA-YY-A8LH-01 X 57620752 57620752 G A ZXDB Silent p.A757A 0.24 TCGA-YY-A8LH-01 X 75004797 75004797 G A MAGEE2 Silent p.N30N 0.38 TCGA-YY-A8LH-01 X 83362013 83362013 G C RPS6KA6 Missense_Mutation p.Q383E 0.06 tolerated(0.82) benign(0.034) TCGA-Z5-AAPL-01 17 7577566 7577566 T C TP53 Missense_Mutation p.N239D 0.04 deleterious(0) probably_damaging(1) TCGA-Z5-AAPL-01 18 32374135 32374135 C T DTNA Missense_Mutation p.R95W 0.03 deleterious(0) probably_damaging(0.999) TCGA-Z5-AAPL-01 1 145209152 145209152 G C RP11-458D21.5 5'UTR 0.10 TCGA-Z5-AAPL-01 1 75065538 75065538 T C C1orf173 Missense_Mutation p.M523V 0.03 tolerated(0.05) benign(0.264) TCGA-Z5-AAPL-01 20 61513415 61513415 G A DIDO1 Missense_Mutation p.T1298M 0.06 benign(0.015) TCGA-Z5-AAPL-01 3 52637535 52637535 A G PBRM1 Splice_Site p.X927_splice 0.05 TCGA-Z5-AAPL-01 4 160266337 160266337 A T RAPGEF2 Missense_Mutation p.S959C 0.05 deleterious(0) probably_damaging(0.984) TCGA-Z5-AAPL-01 4 187521297 187521297 C A FAT1 Missense_Mutation p.G3953V 0.04 probably_damaging(1) TCGA-Z5-AAPL-01 6 127797110 127797110 G A SOGA3 Silent p.H687H 0.03