sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-P7-A5NX-01 12 110834213 110834213 T G ANAPC7 Missense_Mutation p.H83P 0.20 tolerated(0.1) benign(0.313) TCGA-P7-A5NX-01 12 43846144 43846144 T A ADAMTS20 Missense_Mutation p.D671V 0.38 deleterious(0) possibly_damaging(0.816) TCGA-P7-A5NX-01 17 26976014 26976014 T G SDF2 Missense_Mutation p.E210A 0.07 deleterious(0) benign(0.321) TCGA-P7-A5NX-01 18 47488727 47488727 C G MYO5B Missense_Mutation p.W485S 0.17 deleterious(0) probably_damaging(1) TCGA-P7-A5NX-01 19 16687787 16687787 G A MED26 Missense_Mutation p.A285V 0.08 tolerated(0.23) benign(0.064) TCGA-P7-A5NX-01 19 49656694 49656694 A G HRC Missense_Mutation p.S601P 0.33 deleterious(0.04) probably_damaging(0.939) TCGA-P7-A5NX-01 1 233363071 233363071 C T PCNXL2 Missense_Mutation p.G802E 0.06 tolerated(1) benign(0.005) TCGA-P7-A5NX-01 1 240370244 240370244 T A FMN2 Missense_Mutation p.L711H 0.12 unknown(0) TCGA-P7-A5NX-01 1 247492595 247492595 G T ZNF496 Silent p.R96R 0.10 TCGA-P7-A5NX-01 3 51393611 51393611 C T DOCK3 Silent p.R1447R 0.07 TCGA-P7-A5NX-01 4 183245322 183245322 T A TENM3 Missense_Mutation p.F50Y 0.09 tolerated_low_confidence(1) benign(0.418) TCGA-P7-A5NX-01 4 189063419 189063419 C A TRIML1 Missense_Mutation p.T173N 0.36 tolerated(0.54) benign(0.004) TCGA-P7-A5NX-01 6 34826576 34826576 G C UHRF1BP1 Missense_Mutation p.D815H 0.04 deleterious(0) possibly_damaging(0.718) TCGA-P7-A5NX-01 6 50696701 50696701 T G TFAP2D Missense_Mutation p.L244R 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-P7-A5NX-01 7 135289192 135289192 A T NUP205 Missense_Mutation p.D936V 0.05 tolerated(0.21) benign(0.098) TCGA-P7-A5NX-01 7 149510857 149510857 G A SSPO RNA 0.08 TCGA-P7-A5NX-01 7 92083921 92083921 A G GATAD1 Missense_Mutation p.K181E 0.34 deleterious(0) possibly_damaging(0.685) TCGA-P7-A5NX-01 9 88248216 88248216 G A AGTPBP1 Missense_Mutation p.P419L 0.08 deleterious(0) probably_damaging(0.984) TCGA-P7-A5NX-01 X 123215268 123215269 TG A STAG2 Frame_Shift_Del p.F938Lfs*11 0.29 TCGA-P7-A5NX-01 X 75651040 75651040 G A MAGEE1 Missense_Mutation p.R906H 0.04 tolerated(0.54) probably_damaging(0.998) TCGA-P7-A5NY-01 12 44171441 44171441 A G IRAK4 Missense_Mutation p.H242R 0.37 deleterious(0) possibly_damaging(0.873) TCGA-P7-A5NY-01 17 11642318 11642318 G A DNAH9 Missense_Mutation p.R1979H 0.08 probably_damaging(0.988) TCGA-P7-A5NY-01 19 605212 605212 A G HCN2 Missense_Mutation p.N403S 0.20 deleterious(0.02) benign(0.173) TCGA-P7-A5NY-01 3 100328717 100328717 C T GPR128 Missense_Mutation p.A6V 0.08 tolerated(0.82) benign(0.005) TCGA-P7-A5NY-01 3 127646684 127646684 T C KBTBD12 Missense_Mutation p.I383T 0.05 tolerated(0.12) benign(0.142) TCGA-P7-A5NY-01 7 99621184 99621184 G A ZKSCAN1 Missense_Mutation p.E19K 0.07 tolerated(0.08) benign(0.108) TCGA-P8-A5KC-01 11 130278724 130278724 T C ADAMTS8 Missense_Mutation p.D621G 0.21 deleterious(0) probably_damaging(0.968) TCGA-P8-A5KC-01 11 134014247 134014247 G A JAM3 Missense_Mutation p.R123H 0.05 tolerated(0.25) benign(0.009) TCGA-P8-A5KC-01 11 55905035 55905035 G C OR8J3 Missense_Mutation p.R54G 0.06 deleterious(0.02) benign(0.016) TCGA-P8-A5KC-01 12 104140440 104140440 G C STAB2 Missense_Mutation p.E2068Q 0.17 tolerated(0.37) benign(0.417) TCGA-P8-A5KC-01 15 52646099 52646099 T G MYO5A Missense_Mutation p.K1179T 0.11 tolerated(0.16) benign(0.379) TCGA-P8-A5KC-01 16 24817584 24817584 C T TNRC6A Missense_Mutation p.R1437W 0.16 deleterious(0) probably_damaging(0.999) TCGA-P8-A5KC-01 17 40478180 40478180 G A STAT3 Missense_Mutation p.T440I 0.09 tolerated(0.11) benign(0.431) TCGA-P8-A5KC-01 1 150812108 150812108 G A ARNT Missense_Mutation p.R99W 0.23 deleterious(0) probably_damaging(1) TCGA-P8-A5KC-01 1 221053618 221053618 C T HLX Missense_Mutation p.P140L 0.18 deleterious_low_confidence(0) benign(0.212) TCGA-P8-A5KC-01 1 34090179 34090179 C T CSMD2 Silent p.P1815P 0.06 TCGA-P8-A5KC-01 1 66723180 66723180 G A PDE4B Intron 0.07 TCGA-P8-A5KC-01 2 109545753 109545753 A G EDAR Missense_Mutation p.I86T 0.09 tolerated(0.3) probably_damaging(0.985) TCGA-P8-A5KC-01 2 216273109 216273109 C T FN1 Silent p.L780L 0.27 TCGA-P8-A5KC-01 2 234102471 234102471 T C INPP5D Silent p.I808I 0.30 TCGA-P8-A5KC-01 2 242439665 242439665 A C STK25 Missense_Mutation p.I117S 0.11 deleterious(0) probably_damaging(1) TCGA-P8-A5KC-01 X 51637809 51637809 C T MAGED1 Silent p.C44C 0.33 TCGA-P8-A5KD-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.49 tolerated(0.07) benign(0.069) TCGA-P8-A5KD-01 17 76457712 76457712 G A DNAH17 Nonsense_Mutation p.Q3071* 0.32 TCGA-P8-A5KD-01 1 148004602 148004602 C A NBPF14 Missense_Mutation p.L910F 0.08 deleterious(0.01) possibly_damaging(0.863) TCGA-P8-A5KD-01 1 186274011 186274012 - AA PRG4 Frame_Shift_Ins p.N187Kfs*15 0.35 TCGA-P8-A5KD-01 1 244773657 244773657 T G C1orf101 Intron 0.23 TCGA-P8-A5KD-01 2 219247721 219247721 G T SLC11A1 Missense_Mutation p.G16C 0.09 deleterious(0.02) probably_damaging(1) TCGA-P8-A5KD-01 3 125874318 125874318 C G ALDH1L1 Missense_Mutation p.G196A 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-P8-A5KD-01 3 52521842 52521842 G T NISCH Silent p.L778L 0.30 TCGA-P8-A5KD-01 5 80643655 80643655 G A ACOT12 Silent p.H197H 0.35 TCGA-P8-A5KD-01 6 27791956 27791956 C A HIST1H4J Silent p.R18R 0.54 TCGA-P8-A5KD-01 9 100961724 100961724 G C TBC1D2 Missense_Mutation p.S898C 0.06 tolerated(0.08) benign(0.009) TCGA-P8-A6RX-01 12 11546415 11546415 T C PRB2 Silent p.G199G 0.27 TCGA-P8-A6RX-01 12 41333285 41333285 C A CNTN1 Missense_Mutation p.S459R 0.48 deleterious(0) possibly_damaging(0.831) TCGA-P8-A6RX-01 12 62785104 62785104 C T USP15 Nonsense_Mutation p.R710* 0.38 TCGA-P8-A6RX-01 14 106054006 106054006 G A IGHA2 Silent p.S171S 0.21 TCGA-P8-A6RX-01 17 43912060 43912060 G A CRHR1 Missense_Mutation p.R422H 0.29 deleterious(0) probably_damaging(0.981) TCGA-P8-A6RX-01 17 56699053 56699053 C T TEX14 Missense_Mutation p.R171Q 0.26 tolerated(0.29) benign(0.035) TCGA-P8-A6RX-01 17 7752181 7752181 G A KDM6B Missense_Mutation p.G859S 0.35 probably_damaging(0.931) TCGA-P8-A6RX-01 18 72998961 72998961 C G TSHZ1 Nonsense_Mutation p.Y488* 0.34 TCGA-P8-A6RX-01 1 157805895 157805895 G A CD5L Missense_Mutation p.R36W 0.35 deleterious(0) benign(0.411) TCGA-P8-A6RX-01 1 220346011 220346011 T A RAB3GAP2 Missense_Mutation p.H795L 0.14 tolerated(0.13) benign(0.017) TCGA-P8-A6RX-01 1 24392434 24392434 G A MYOM3 Missense_Mutation p.P1161S 0.28 tolerated(0.13) benign(0.377) TCGA-P8-A6RX-01 20 30366768 30366768 G T TPX2 Missense_Mutation p.R345S 0.13 deleterious(0) probably_damaging(0.974) TCGA-P8-A6RX-01 2 215847076 215847076 G A ABCA12 Missense_Mutation p.R1472C 0.35 deleterious(0) probably_damaging(0.982) TCGA-P8-A6RX-01 5 73931637 73931637 C T ENC1 Missense_Mutation p.R225H 0.23 deleterious(0) possibly_damaging(0.905) TCGA-P8-A6RX-01 7 148427298 148427298 C G CUL1 Missense_Mutation p.I28M 0.06 deleterious(0.03) possibly_damaging(0.745) TCGA-P8-A6RX-01 8 143994109 143994109 C T CYP11B2 Missense_Mutation p.R412H 0.05 deleterious(0) benign(0.347) TCGA-P8-A6RX-01 8 22067192 22067192 G A BMP1 Missense_Mutation p.R937H 0.43 deleterious(0.02) benign(0.344) TCGA-P8-A6RX-01 8 97621721 97621721 G T SDC2 Missense_Mutation p.R184L 0.41 deleterious(0) probably_damaging(0.999) TCGA-P8-A6RX-01 9 72056012 72056012 C T APBA1 Missense_Mutation p.R734Q 0.33 tolerated(0.5) possibly_damaging(0.68) TCGA-P8-A6RX-01 9 80923397 80923397 G A PSAT1 Missense_Mutation p.R213H 0.34 deleterious(0.01) probably_damaging(0.968) TCGA-P8-A6RX-01 9 84608005 84608005 C T SPATA31D1 Nonsense_Mutation p.R874* 0.21 TCGA-P8-A6RX-01 X 70767856 70767856 A G OGT Missense_Mutation p.I211V 0.73 tolerated(0.13) probably_damaging(0.998) TCGA-P8-A6RY-01 10 49667823 49667823 A T ARHGAP22 Missense_Mutation p.L204H 0.42 deleterious(0) probably_damaging(0.999) TCGA-P8-A6RY-01 11 89867874 89867875 - C NAALAD2 5'UTR 0.44 TCGA-P8-A6RY-01 12 66221789 66221789 C T HMGA2 Silent p.T40T 0.42 TCGA-P8-A6RY-01 19 46032458 46032458 G A OPA3 Silent p.L133L 0.52 TCGA-P8-A6RY-01 19 5692054 5692054 C A LONP1 Missense_Mutation p.V957L 0.46 tolerated_low_confidence(0.2) benign(0.003) TCGA-P8-A6RY-01 19 8399294 8399294 T C KANK3 Missense_Mutation p.K446R 0.11 tolerated(0.05) probably_damaging(0.991) TCGA-P8-A6RY-01 19 853364 853364 C T ELANE Silent p.Y109Y 0.35 TCGA-P8-A6RY-01 1 158687537 158687537 G A OR6K3 Silent p.Y123Y 0.04 TCGA-P8-A6RY-01 9 35819971 35819971 G T FAM221B Missense_Mutation p.H257N 0.07 deleterious(0.03) possibly_damaging(0.814) TCGA-PR-A5PF-01 11 284621 284621 G A NLRP6 Missense_Mutation p.G840E 0.14 tolerated(0.32) benign(0.005) TCGA-PR-A5PF-01 11 375706 375706 G C B4GALNT4 Silent p.G306G 0.15 TCGA-PR-A5PF-01 12 52981542 52981542 C T KRT72 Missense_Mutation p.A395T 0.42 deleterious(0) possibly_damaging(0.833) TCGA-PR-A5PF-01 14 24610468 24610468 G A EMC9 Silent p.L16L 0.32 TCGA-PR-A5PF-01 15 41120792 41120792 C A PPP1R14D Silent p.G16G 0.20 TCGA-PR-A5PF-01 16 20565160 20565160 G A ACSM2B Missense_Mutation p.L227F 0.27 tolerated(0.71) benign(0.016) TCGA-PR-A5PF-01 16 30369824 30369824 T C TBC1D10B Missense_Mutation p.E623G 0.80 deleterious(0) possibly_damaging(0.833) TCGA-PR-A5PF-01 16 3085362 3085362 C G CCDC64B Missense_Mutation p.E46Q 0.67 tolerated(0.09) possibly_damaging(0.763) TCGA-PR-A5PF-01 17 4788820 4788820 G A MINK1 Missense_Mutation p.R184K 0.31 deleterious(0.04) benign(0.22) TCGA-PR-A5PF-01 19 8654799 8654799 A T ADAMTS10 Missense_Mutation p.F625Y 0.47 tolerated(1) benign(0.002) TCGA-PR-A5PF-01 1 156816315 156816315 A T INSRR Silent p.P602P 0.60 TCGA-PR-A5PF-01 22 50657281 50657281 G T TUBGCP6 Missense_Mutation p.L1558M 0.71 deleterious(0) probably_damaging(1) TCGA-PR-A5PF-01 2 135722441 135722441 G C MAP3K19 Silent p.S1322S 0.22 TCGA-PR-A5PF-01 2 16734239 16734239 A G FAM49A Missense_Mutation p.S313P 0.47 deleterious(0.01) possibly_damaging(0.799) TCGA-PR-A5PF-01 2 241500094 241500094 C T DUSP28 5'UTR 0.36 TCGA-PR-A5PF-01 2 48809015 48809015 A G STON1-GTF2A1L Missense_Mutation p.I415V 0.41 deleterious(0.03) benign(0.015) TCGA-PR-A5PF-01 2 48906596 48906596 G A STON1-GTF2A1L 3'UTR 0.09 TCGA-PR-A5PF-01 3 113955352 113955352 C T ZNF80 Silent p.K190K 0.39 TCGA-PR-A5PF-01 3 197273266 197273266 T - BDH1 Frame_Shift_Del p.T17Pfs*2 0.35 TCGA-PR-A5PF-01 3 42703080 42703080 A G ZBTB47 Missense_Mutation p.E526G 0.09 tolerated(0.26) unknown(0) TCGA-PR-A5PF-01 4 71634293 71634293 A G RUFY3 Missense_Mutation p.E204G 0.42 deleterious(0) possibly_damaging(0.861) TCGA-PR-A5PF-01 6 32053641 32053641 C T TNXB Missense_Mutation p.V1012I 0.35 benign(0.017) TCGA-PR-A5PF-01 6 66204999 66204999 T A EYS Missense_Mutation p.N102I 0.13 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-PR-A5PF-01 7 91715671 91715671 C G AKAP9 Missense_Mutation p.L3052V 0.04 possibly_damaging(0.7) TCGA-PR-A5PF-01 8 144332586 144332586 A G ZFP41 Silent p.K191K 0.15 TCGA-PR-A5PF-01 X 105281084 105281084 A T SERPINA7 5'UTR 0.09 TCGA-PR-A5PG-01 10 126370689 126370689 C G FAM53B Missense_Mutation p.R131S 0.29 deleterious(0) probably_damaging(0.962) TCGA-PR-A5PG-01 11 113212566 113212566 T C TTC12 Missense_Mutation p.S302P 0.37 tolerated(0.28) possibly_damaging(0.62) TCGA-PR-A5PG-01 11 1270623 1270623 C A MUC5B Silent p.G4171G 0.23 TCGA-PR-A5PG-01 11 26682039 26682039 G A ANO3 3'UTR 0.08 TCGA-PR-A5PG-01 11 534286 534286 C G HRAS Missense_Mutation p.G13R 0.57 deleterious(0) probably_damaging(0.992) TCGA-PR-A5PG-01 12 53189646 53189646 C T KRT3 Missense_Mutation p.G61S 0.31 deleterious(0.01) unknown(0) TCGA-PR-A5PG-01 16 4787829 4787829 T A C16orf71 Missense_Mutation p.I53N 0.08 deleterious(0) probably_damaging(0.991) TCGA-PR-A5PG-01 17 45219308 45219308 A G CDC27 Silent p.L494L 0.25 TCGA-PR-A5PG-01 17 65944414 65944414 G A BPTF Missense_Mutation p.E2640K 0.14 benign(0.225) TCGA-PR-A5PG-01 1 145538808 145538808 G A ITGA10 Silent p.R973R 0.37 TCGA-PR-A5PG-01 1 20067293 20067293 G A TMCO4 Missense_Mutation p.A340V 0.75 deleterious(0) possibly_damaging(0.549) TCGA-PR-A5PG-01 1 36786147 36786147 T C SH3D21 Missense_Mutation p.V628A 0.16 tolerated(0.36) benign(0.294) TCGA-PR-A5PG-01 1 65124466 65124466 A C CACHD1 Missense_Mutation p.T570P 0.59 tolerated(0.26) benign(0.425) TCGA-PR-A5PG-01 20 45354641 45354641 C A SLC2A10 Silent p.P322P 0.45 TCGA-PR-A5PG-01 20 47991070 47991070 T C KCNB1 Missense_Mutation p.M343V 0.33 deleterious(0.01) probably_damaging(0.994) TCGA-PR-A5PG-01 20 62904858 62904858 C T PCMTD2 Missense_Mutation p.P331S 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.73) TCGA-PR-A5PG-01 3 53839013 53839013 A G CACNA1D Silent p.Q1883Q 0.45 TCGA-PR-A5PG-01 4 190884343 190884343 G A FRG1 3'UTR 0.09 TCGA-PR-A5PG-01 8 87498786 87498786 A G RMDN1 Missense_Mutation p.L141P 0.32 tolerated(0.29) benign(0.009) TCGA-PR-A5PG-01 X 100356051 100356051 T A CENPI 5'UTR 0.04 TCGA-PR-A5PG-01 X 118143095 118143095 G T LONRF3 Missense_Mutation p.A513S 0.26 tolerated(0.06) benign(0.119) TCGA-PR-A5PG-01 X 154159643 154159643 C T F8 Missense_Mutation p.D808N 0.41 tolerated(0.15) benign(0.081) TCGA-PR-A5PH-01 11 55904696 55904696 A G OR8J3 Missense_Mutation p.S167P 0.06 tolerated(0.07) possibly_damaging(0.826) TCGA-PR-A5PH-01 13 99538837 99538837 G A DOCK9 Silent p.S695S 0.41 TCGA-PR-A5PH-01 17 26731690 26731690 T C SLC46A1 Missense_Mutation p.N342S 0.35 tolerated(0.22) probably_damaging(0.998) TCGA-PR-A5PH-01 19 53302223 53302223 T C ZNF28 3'UTR 0.41 TCGA-PR-A5PH-01 1 156106111 156106111 G T LMNA Nonsense_Mutation p.E422* 0.29 TCGA-PR-A5PH-01 1 51439844 51439844 G A CDKN2C Missense_Mutation p.G137R 0.46 deleterious(0) probably_damaging(1) TCGA-PR-A5PH-01 2 74154050 74154050 C T DGUOK Missense_Mutation p.R5C 0.37 deleterious_low_confidence(0) possibly_damaging(0.614) TCGA-PR-A5PH-01 2 98275013 98275013 G A ACTR1B Silent p.H178H 0.38 TCGA-PR-A5PH-01 3 193183900 193183900 T C ATP13A4 Missense_Mutation p.R396G 0.38 deleterious(0) possibly_damaging(0.828) TCGA-PR-A5PH-01 4 87701607 87701607 A G PTPN13 Missense_Mutation p.K1987E 0.26 tolerated(0.71) benign(0.003) TCGA-PR-A5PH-01 5 14690382 14690382 C G FAM105B Missense_Mutation p.L277V 0.30 deleterious(0) probably_damaging(0.999) TCGA-PR-A5PH-01 6 138202460 138202460 G T TNFAIP3 3'UTR 0.36 TCGA-PR-A5PH-01 Y 4968046 4968046 C T PCDH11Y Silent p.T809T 0.05 TCGA-QR-A6GO-01 11 2337870 2337870 G A TSPAN32 Missense_Mutation p.R231H 0.05 tolerated(0.06) benign(0.363) TCGA-QR-A6GO-01 11 60615402 60615402 C T CCDC86 Missense_Mutation p.S255F 0.07 deleterious(0) probably_damaging(0.999) TCGA-QR-A6GO-01 11 65546077 65546077 C A AP5B1 Silent p.V629V 0.22 TCGA-QR-A6GO-01 11 73008374 73008374 G A P2RY6 Missense_Mutation p.V271I 0.06 tolerated(0.17) benign(0.017) TCGA-QR-A6GO-01 14 74968293 74968293 T G LTBP2 Missense_Mutation p.E1724A 0.09 tolerated(0.49) benign(0.219) TCGA-QR-A6GO-01 15 53081412 53081412 C T ONECUT1 Missense_Mutation p.A224T 0.08 tolerated(0.06) benign(0.115) TCGA-QR-A6GO-01 19 13341013 13341013 A C CACNA1A Missense_Mutation p.L1804R 0.38 possibly_damaging(0.883) TCGA-QR-A6GO-01 3 189582120 189582120 G A TP63 Missense_Mutation p.A227T 0.07 deleterious(0) probably_damaging(1) TCGA-QR-A6GO-01 3 40299760 40299760 A G MYRIP 3'UTR 0.09 TCGA-QR-A6GO-01 4 1816225 1816225 T C LETM1 Missense_Mutation p.K716E 0.11 deleterious(0) unknown(0) TCGA-QR-A6GO-01 7 148802161 148802162 - GA ZNF425 Frame_Shift_Ins p.H268Sfs*23 0.18 TCGA-QR-A6GO-01 8 62596684 62596684 G A ASPH Missense_Mutation p.T56M 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-QR-A6GO-01 X 39937137 39937137 T G BCOR Missense_Mutation p.N16H 0.71 deleterious_low_confidence(0) possibly_damaging(0.677) TCGA-QR-A6GR-01 11 46765604 46765604 C A CKAP5 Missense_Mutation p.R2023I 0.10 deleterious(0) possibly_damaging(0.703) TCGA-QR-A6GR-01 15 42614135 42614135 G A GANC Missense_Mutation p.G404S 0.41 benign(0.395) TCGA-QR-A6GR-01 15 43527804 43527804 A G TGM5 Missense_Mutation p.V526A 0.37 tolerated(0.84) benign(0.094) TCGA-QR-A6GR-01 17 33679950 33679950 C G SLFN11 Missense_Mutation p.D711H 0.41 tolerated(0.18) benign(0.015) TCGA-QR-A6GR-01 17 56584150 56584150 C T MTMR4 Silent p.T315T 0.19 TCGA-QR-A6GR-01 20 37153542 37153542 G A RALGAPB Missense_Mutation p.V581M 0.34 deleterious(0.01) possibly_damaging(0.576) TCGA-QR-A6GR-01 21 35154325 35154325 C G ITSN1 Missense_Mutation p.A571G 0.33 tolerated(0.16) benign(0.068) TCGA-QR-A6GR-01 2 168115434 168115434 T A XIRP2 3'UTR 0.35 TCGA-QR-A6GR-01 2 28550178 28550178 G A BRE Missense_Mutation p.E376K 0.34 tolerated_low_confidence(0.06) benign(0) TCGA-QR-A6GR-01 2 95713828 95713828 A G MAL Missense_Mutation p.Y73C 0.21 deleterious(0) probably_damaging(1) TCGA-QR-A6GR-01 2 95713830 95713830 A G MAL Missense_Mutation p.I74V 0.20 tolerated(0.4) benign(0.008) TCGA-QR-A6GR-01 4 8207347 8207347 G C SH3TC1 Intron 0.29 TCGA-QR-A6GR-01 6 168281192 168281192 G T MLLT4 Missense_Mutation p.A298S 0.25 deleterious(0.01) benign(0.339) TCGA-QR-A6GR-01 6 38881624 38881624 G A DNAH8 Splice_Site p.X3070_splice 0.23 TCGA-QR-A6GR-01 8 43147783 43147783 C T POTEA RNA 0.33 TCGA-QR-A6GR-01 8 87470169 87470169 A G WWP1 Missense_Mutation p.Q805R 0.39 deleterious(0.01) benign(0.032) TCGA-QR-A6GR-01 X 63445429 63445429 C T ASB12 Silent p.E34E 0.13 TCGA-QR-A6GS-01 15 41059517 41059517 G C GCHFR Missense_Mutation p.Q75H 0.37 tolerated(0.06) probably_damaging(0.951) TCGA-QR-A6GS-01 17 29541604 29541604 G T NF1 Splice_Site p.X509_splice 0.69 TCGA-QR-A6GS-01 19 46268709 46268709 C T SIX5 3'UTR 0.12 TCGA-QR-A6GS-01 19 58963019 58963019 G A ZNF324B 5'UTR 0.20 TCGA-QR-A6GS-01 1 185892705 185892705 T G HMCN1 Missense_Mutation p.F402C 0.12 probably_damaging(0.971) TCGA-QR-A6GS-01 1 214546172 214546172 C G PTPN14 Missense_Mutation p.G973A 0.09 tolerated(0.33) benign(0.002) TCGA-QR-A6GS-01 1 876551 876551 C T SAMD11 Missense_Mutation p.A245V 0.33 deleterious(0.03) benign(0.026) TCGA-QR-A6GS-01 20 23375633 23375633 T A NAPB Missense_Mutation p.R116W 0.44 deleterious(0) probably_damaging(0.998) TCGA-QR-A6GS-01 22 43606947 43606947 G T SCUBE1 Silent p.T788T 0.31 TCGA-QR-A6GS-01 4 40440293 40440293 C T RBM47 Silent p.A206A 0.09 TCGA-QR-A6GS-01 4 8242527 8242527 A G SH3TC1 Missense_Mutation p.I1286V 0.13 tolerated(0.07) benign(0.084) TCGA-QR-A6GS-01 5 58273098 58273098 G T PDE4D Missense_Mutation p.L543I 0.11 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-QR-A6GS-01 8 37635675 37635675 A T PROSC 3'UTR 0.21 TCGA-QR-A6GT-01 10 18840857 18840857 C T NSUN6 Silent p.L322L 0.07 TCGA-QR-A6GT-01 11 18159635 18159635 C T MRGPRX3 Nonsense_Mutation p.Q296* 0.31 TCGA-QR-A6GT-01 11 8111173 8111173 G A TUB Missense_Mutation p.G74S 0.22 tolerated(0.92) benign(0.161) TCGA-QR-A6GT-01 14 21825383 21825383 G A SUPT16H Missense_Mutation p.S878F 0.12 tolerated(0.64) possibly_damaging(0.898) TCGA-QR-A6GT-01 16 28909395 28909395 C A ATP2A1 Nonsense_Mutation p.C498* 0.33 TCGA-QR-A6GT-01 17 3990757 3990757 G C ZZEF1 Missense_Mutation p.F771L 0.25 tolerated(0.24) benign(0.021) TCGA-QR-A6GT-01 18 28672206 28672206 A C DSC2 Missense_Mutation p.F71C 0.09 deleterious(0) probably_damaging(1) TCGA-QR-A6GT-01 18 72775248 72775248 G A ZNF407 Silent p.A1857A 0.27 TCGA-QR-A6GT-01 19 46299152 46299153 - CTCCTCGCCCTCCTCCTC RSPH6A In_Frame_Ins p.E709_E710insGGGGRG 0.09 TCGA-QR-A6GT-01 1 156815542 156815542 G A INSRR Silent p.A681A 0.18 TCGA-QR-A6GT-01 1 171501630 171501630 G A PRRC2C Missense_Mutation p.R466H 0.24 unknown(0) TCGA-QR-A6GT-01 1 184764710 184764710 T G FAM129A Missense_Mutation p.M730L 0.22 tolerated_low_confidence(0.48) benign(0.002) TCGA-QR-A6GT-01 20 17614233 17614233 G A RRBP1 Missense_Mutation p.R395W 0.23 deleterious(0) possibly_damaging(0.835) TCGA-QR-A6GT-01 2 193059174 193059175 - GCAGCA TMEFF2 In_Frame_Ins p.L24_L25dup 0.27 TCGA-QR-A6GT-01 2 55460001 55460001 C T RPS27A Missense_Mutation p.T14I 0.36 tolerated(0.08) benign(0.013) TCGA-QR-A6GT-01 2 68400518 68400518 G - PNO1 Frame_Shift_Del p.A221Qfs*8 0.27 TCGA-QR-A6GT-01 3 52773447 52773447 G A NEK4 Missense_Mutation p.S766L 0.44 tolerated(0.13) benign(0.03) TCGA-QR-A6GT-01 4 122085327 122085327 G A TNIP3 Intron 0.29 TCGA-QR-A6GT-01 4 57350934 57350934 A T SRP72 Missense_Mutation p.L330F 0.33 tolerated(0.09) possibly_damaging(0.45) TCGA-QR-A6GT-01 4 62903516 62903516 T C LPHN3 Missense_Mutation p.I1152T 0.07 tolerated(0.37) benign(0.099) TCGA-QR-A6GT-01 5 176304658 176304658 G T UNC5A Missense_Mutation p.S530I 0.26 deleterious(0) benign(0.228) TCGA-QR-A6GT-01 6 32130673 32130673 C T PPT2 Silent p.A291A 0.26 TCGA-QR-A6GT-01 6 6266931 6266931 C T F13A1 Missense_Mutation p.R144Q 0.23 tolerated(0.22) benign(0.437) TCGA-QR-A6GT-01 6 97345726 97345726 G A NDUFAF4 5'UTR 0.22 TCGA-QR-A6GT-01 7 102850743 102850743 C T DPY19L2P2 RNA 0.36 TCGA-QR-A6GT-01 7 16734587 16734587 G A BZW2 Silent p.K260K 0.07 TCGA-QR-A6GT-01 7 77469597 77469597 A G PHTF2 Missense_Mutation p.I9V 0.17 tolerated(0.31) benign(0.003) TCGA-QR-A6GT-01 8 41805396 41805396 T A KAT6A Missense_Mutation p.N592I 0.09 probably_damaging(0.992) TCGA-QR-A6GT-01 8 8998550 8998550 A G PPP1R3B Silent p.S204S 0.07 TCGA-QR-A6GT-01 9 127975673 127975673 C T RABEPK Missense_Mutation p.T79I 0.06 tolerated(0.05) benign(0.295) TCGA-QR-A6GT-01 9 95418813 95418813 T C IPPK Silent p.Q50Q 0.34 TCGA-QR-A6GT-01 X 128887218 128887218 C T XPNPEP2 Silent p.A367A 0.52 TCGA-QR-A6GT-01 X 133948879 133948879 G A FAM122C Silent p.L63L 0.55 TCGA-QR-A6GT-01 X 30268674 30268674 A T MAGEB1 Missense_Mutation p.T22S 0.23 tolerated(0.33) benign(0.145) TCGA-QR-A6GT-01 X 76939263 76939263 T - ATRX Frame_Shift_Del p.K495Nfs*19 0.31 TCGA-QR-A6GU-01 11 64822094 64822094 G T NAALADL1 Silent p.P240P 0.19 TCGA-QR-A6GU-01 14 79175617 79175617 G A NRXN3 Missense_Mutation p.D54N 0.05 tolerated(0.08) possibly_damaging(0.524) TCGA-QR-A6GU-01 15 100211551 100211551 T A MEF2A Intron 0.20 TCGA-QR-A6GU-01 16 27659922 27659922 C A KIAA0556 Intron 0.11 TCGA-QR-A6GU-01 16 57155597 57155597 G A CPNE2 Silent p.E264E 0.15 TCGA-QR-A6GU-01 17 59477559 59477559 G C TBX2 Missense_Mutation p.A8P 0.16 deleterious(0) benign(0.059) TCGA-QR-A6GU-01 18 21329485 21329485 G A LAMA3 Missense_Mutation p.R220H 0.17 probably_damaging(0.984) TCGA-QR-A6GU-01 19 13910696 13910696 C G ZSWIM4 Missense_Mutation p.L106V 0.08 deleterious(0) possibly_damaging(0.801) TCGA-QR-A6GU-01 1 232600987 232600987 C G SIPA1L2 Missense_Mutation p.E807Q 0.03 deleterious(0) probably_damaging(0.999) TCGA-QR-A6GU-01 1 240072244 240072244 T G CHRM3 Missense_Mutation p.L498R 0.28 deleterious(0) probably_damaging(0.958) TCGA-QR-A6GU-01 22 50297457 50297457 T C ALG12 3'UTR 0.06 TCGA-QR-A6GU-01 2 103040356 103040356 G T IL18RAP Missense_Mutation p.Q52H 0.11 tolerated(0.13) benign(0.002) TCGA-QR-A6GU-01 2 145157124 145157124 T C ZEB2 Missense_Mutation p.T544A 0.16 tolerated(0.22) probably_damaging(0.995) TCGA-QR-A6GU-01 2 27500634 27500634 G T DNAJC5G Missense_Mutation p.L42F 0.20 tolerated_low_confidence(0.8) benign(0.001) TCGA-QR-A6GU-01 2 71305537 71305537 G T NAGK Missense_Mutation p.A358S 0.18 deleterious(0.03) probably_damaging(0.942) TCGA-QR-A6GU-01 2 71305538 71305538 C T NAGK Missense_Mutation p.A358V 0.14 deleterious(0) probably_damaging(0.982) TCGA-QR-A6GU-01 3 9426380 9426380 T C THUMPD3 3'UTR 0.14 TCGA-QR-A6GU-01 4 843541 843541 G A GAK Nonsense_Mutation p.Q1286* 0.09 TCGA-QR-A6GU-01 5 36629602 36629602 G T SLC1A3 Missense_Mutation p.V78F 0.10 deleterious(0.02) possibly_damaging(0.598) TCGA-QR-A6GU-01 6 110942543 110942543 G A CDK19 Nonsense_Mutation p.Q381* 0.07 TCGA-QR-A6GU-01 7 107432375 107432375 A T SLC26A3 Missense_Mutation p.F94L 0.11 deleterious(0.01) possibly_damaging(0.868) TCGA-QR-A6GU-01 9 114484733 114484733 A G C9orf84 Missense_Mutation p.L632P 0.19 deleterious(0) probably_damaging(0.919) TCGA-QR-A6GW-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.45 tolerated(0.07) benign(0.069) TCGA-QR-A6GW-01 11 68029067 68029067 A G C11orf24 3'UTR 0.40 TCGA-QR-A6GW-01 11 770893 770893 A T PDDC1 3'UTR 0.20 TCGA-QR-A6GW-01 13 21555612 21555612 G T LATS2 Silent p.L886L 0.33 TCGA-QR-A6GW-01 14 23778132 23778132 G - BCL2L2 Frame_Shift_Del p.A182Pfs*3 0.17 TCGA-QR-A6GW-01 16 67262480 67262480 A G TMEM208 Missense_Mutation p.D82G 0.50 tolerated(0.19) benign(0.046) TCGA-QR-A6GW-01 16 77331217 77331217 T G ADAMTS18 Missense_Mutation p.K924Q 0.04 tolerated(0.68) benign(0.009) TCGA-QR-A6GW-01 18 5291780 5291780 T G ZBTB14 Missense_Mutation p.K143Q 0.26 tolerated(0.26) probably_damaging(0.981) TCGA-QR-A6GW-01 18 74091638 74091638 G A ZNF516 Missense_Mutation p.S811F 0.52 deleterious(0) benign(0.202) TCGA-QR-A6GW-01 19 52448551 52448551 T G ZNF613 Missense_Mutation p.I472S 0.43 deleterious(0.03) benign(0.444) TCGA-QR-A6GW-01 19 55773995 55773995 T C HSPBP1 Missense_Mutation p.D354G 0.11 deleterious(0.01) probably_damaging(0.99) TCGA-QR-A6GW-01 19 9076861 9076861 C T MUC16 Missense_Mutation p.D3529N 0.20 unknown(0) TCGA-QR-A6GW-01 1 227333333 227333333 T C CDC42BPA Missense_Mutation p.I334V 0.40 tolerated(0.12) benign(0.023) TCGA-QR-A6GW-01 2 109384207 109384207 G A RANBP2 Nonsense_Mutation p.W2404* 0.06 TCGA-QR-A6GW-01 2 39997221 39997221 C A THUMPD2 Missense_Mutation p.D101Y 0.09 deleterious(0) possibly_damaging(0.907) TCGA-QR-A6GW-01 3 37366507 37366507 A T GOLGA4 Missense_Mutation p.I1066L 0.58 benign(0.037) TCGA-QR-A6GW-01 9 104307131 104307133 TCT - RNF20 In_Frame_Del p.L239del 0.41 TCGA-QR-A6GW-01 X 12712508 12712508 G A FRMPD4 Missense_Mutation p.V290I 0.27 tolerated(0.1) possibly_damaging(0.701) TCGA-QR-A6GW-01 X 152613127 152613127 G T ZNF275 Intron 0.16 TCGA-QR-A6GW-01 X 18915370 18915370 C T PHKA2 Missense_Mutation p.G1065S 0.04 deleterious(0.04) probably_damaging(0.999) TCGA-QR-A6GW-01 X 49071913 49071913 G A CACNA1F Silent p.Y1120Y 0.39 TCGA-QR-A6GX-01 16 58032116 58032116 T A ZNF319 Silent p.P18P 0.18 TCGA-QR-A6GX-01 16 89702399 89702399 G A DPEP1 Missense_Mutation p.G63D 0.12 tolerated(0.69) benign(0.001) TCGA-QR-A6GX-01 17 34072885 34072885 T C GAS2L2 Missense_Mutation p.D544G 0.09 tolerated(0.13) benign(0.006) TCGA-QR-A6GX-01 17 56386005 56386005 T C BZRAP1 Missense_Mutation p.N1543S 0.36 tolerated(0.34) benign(0.014) TCGA-QR-A6GX-01 18 3188963 3188963 G A MYOM1 Missense_Mutation p.T185M 0.05 tolerated_low_confidence(0.32) benign(0.212) TCGA-QR-A6GX-01 19 10089840 10089840 G A COL5A3 Missense_Mutation p.L948F 0.16 unknown(0) TCGA-QR-A6GX-01 1 11169377 11169377 T A MTOR Missense_Mutation p.I2500F 0.23 deleterious(0) probably_damaging(0.949) TCGA-QR-A6GX-01 3 150377880 150377880 C T FAM194A Silent p.L597L 0.24 TCGA-QR-A6GX-01 3 160142806 160142806 A G SMC4 Missense_Mutation p.Q826R 0.16 tolerated(0.16) benign(0.051) TCGA-QR-A6GX-01 5 148679174 148679174 T C AFAP1L1 Missense_Mutation p.I40T 0.11 deleterious(0) benign(0.358) TCGA-QR-A6GX-01 6 155126575 155126575 A C SCAF8 Silent p.L312L 0.09 TCGA-QR-A6GX-01 6 16274725 16274725 C T GMPR Missense_Mutation p.P182L 0.15 deleterious(0) probably_damaging(0.999) TCGA-QR-A6GX-01 7 20698192 20698192 G A ABCB5 Missense_Mutation p.A534T 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-QR-A6GX-01 X 123526098 123526098 T G TENM1 Missense_Mutation p.D1831A 0.38 deleterious(0) probably_damaging(0.946) TCGA-QR-A6GX-01 X 39911406 39911406 C G BCOR Missense_Mutation p.E1742Q 0.10 deleterious(0) probably_damaging(0.965) TCGA-QR-A6GY-01 11 26529704 26529704 G C ANO3 Missense_Mutation p.K162N 0.45 deleterious(0.01) possibly_damaging(0.493) TCGA-QR-A6GY-01 11 5221718 5221718 G A OR51V1 Silent p.F71F 0.37 TCGA-QR-A6GY-01 11 70281327 70281327 C T CTTN Intron 0.50 TCGA-QR-A6GY-01 14 106963045 106963045 G A IGHV1-45 Silent p.Y79Y 0.39 TCGA-QR-A6GY-01 15 51285806 51285806 A G AP4E1 Missense_Mutation p.E777G 0.32 deleterious(0.04) benign(0.04) TCGA-QR-A6GY-01 16 4412682 4412682 C A CORO7 Missense_Mutation p.G445W 0.07 deleterious(0) probably_damaging(0.961) TCGA-QR-A6GY-01 16 66437025 66437025 C T CDH5 Silent p.L770L 0.12 TCGA-QR-A6GY-01 17 1554459 1554459 G A PRPF8 Missense_Mutation p.R2266C 0.09 deleterious(0) possibly_damaging(0.653) TCGA-QR-A6GY-01 17 7577084 7577084 T A TP53 Missense_Mutation p.E285V 0.81 deleterious(0) probably_damaging(0.978) TCGA-QR-A6GY-01 18 31432959 31432959 G C NOL4 Missense_Mutation p.S588R 0.09 deleterious(0.04) benign(0.398) TCGA-QR-A6GY-01 19 22363510 22363510 A G ZNF676 Missense_Mutation p.Y337H 0.12 deleterious(0.04) probably_damaging(0.998) TCGA-QR-A6GY-01 19 6833230 6833230 G A VAV1 Missense_Mutation p.G515E 0.41 tolerated(0.27) possibly_damaging(0.502) TCGA-QR-A6GY-01 22 32480635 32480635 T A SLC5A1 Missense_Mutation p.C292S 0.07 deleterious(0.02) probably_damaging(0.998) TCGA-QR-A6GY-01 4 187630130 187630130 A G FAT1 Silent p.G284G 0.04 TCGA-QR-A6GY-01 4 42629113 42629113 T A ATP8A1 Silent p.T21T 0.08 TCGA-QR-A6GY-01 5 149360408 149360408 A G SLC26A2 Missense_Mutation p.M418V 0.06 deleterious(0) possibly_damaging(0.872) TCGA-QR-A6GY-01 5 82835161 82835163 AAC - VCAN In_Frame_Del p.T2115del 0.30 TCGA-QR-A6GY-01 6 109818700 109818700 A G AK9 Silent p.C1761C 0.36 TCGA-QR-A6GY-01 9 33395149 33395149 T C AQP7 Missense_Mutation p.K24R 0.07 tolerated(1) benign(0.002) TCGA-QR-A6GY-01 9 35664419 35664419 G A ARHGEF39 Missense_Mutation p.L102F 0.32 tolerated(0.08) probably_damaging(0.991) TCGA-QR-A6GY-01 X 129803980 129803980 T G ENOX2 Missense_Mutation p.Y247S 0.40 deleterious(0) probably_damaging(0.998) TCGA-QR-A6GY-01 X 34149314 34149314 C T FAM47A Missense_Mutation p.R361H 0.05 tolerated(1) benign(0) TCGA-QR-A6GY-01 X 78010713 78010713 C T LPAR4 Missense_Mutation p.T116I 0.22 deleterious(0.01) possibly_damaging(0.806) TCGA-QR-A6GZ-01 12 113714812 113714812 A G TPCN1 Missense_Mutation p.H416R 0.28 tolerated(0.2) probably_damaging(0.948) TCGA-QR-A6GZ-01 16 51173041 51173041 C T SALL1 Missense_Mutation p.C1031Y 0.18 deleterious(0) probably_damaging(0.997) TCGA-QR-A6GZ-01 18 59221533 59221533 G A CDH20 Missense_Mutation p.G671S 0.22 deleterious(0.01) probably_damaging(0.98) TCGA-QR-A6GZ-01 19 4171463 4171463 T C CREB3L3 Silent p.F353F 0.23 TCGA-QR-A6GZ-01 1 23235625 23235625 C T EPHB2 Silent p.S822S 0.26 TCGA-QR-A6GZ-01 21 26946357 26946357 T G MIR155HG RNA 0.23 TCGA-QR-A6GZ-01 2 189342446 189342446 G A GULP1 Missense_Mutation p.S6N 0.06 tolerated_low_confidence(0.54) benign(0) TCGA-QR-A6H0-01 10 23248052 23248052 C G ARMC3 Missense_Mutation p.Q116E 0.10 tolerated(0.15) benign(0.196) TCGA-QR-A6H0-01 1 156177746 156177746 C T SLC25A44 Missense_Mutation p.A232V 0.17 deleterious(0.01) probably_damaging(0.945) TCGA-QR-A6H0-01 1 178482277 178482277 C G TEX35 5'UTR 0.21 TCGA-QR-A6H0-01 2 201448272 201448272 T C SGOL2 3'UTR 0.09 TCGA-QR-A6H0-01 3 173322724 173322724 A G NLGN1 Silent p.Q112Q 0.19 TCGA-QR-A6H0-01 4 189060901 189060901 G A TRIML1 Silent p.P63P 0.08 TCGA-QR-A6H0-01 6 35473863 35473863 G A TULP1 Missense_Mutation p.R306C 0.24 deleterious(0) probably_damaging(0.989) TCGA-QR-A6H0-01 6 80201370 80201370 G A LCA5 Missense_Mutation p.P345S 0.15 tolerated(0.18) benign(0.201) TCGA-QR-A6H1-01 10 101473220 101473220 T C COX15 3'Flank 0.21 TCGA-QR-A6H1-01 10 45602582 45602582 T C RSU1P2 RNA 0.79 TCGA-QR-A6H1-01 16 30793592 30793592 T C ZNF629 Missense_Mutation p.N686S 0.22 tolerated(0.11) benign(0) TCGA-QR-A6H1-01 19 12758270 12758271 - T MAN2B1 Frame_Shift_Ins p.T936Nfs*? 0.28 TCGA-QR-A6H1-01 19 14031583 14031583 C A CC2D1A Missense_Mutation p.L497I 0.52 deleterious(0) probably_damaging(0.962) TCGA-QR-A6H1-01 1 230825896 230825896 A G COG2 Missense_Mutation p.H644R 0.40 tolerated(0.25) benign(0.008) TCGA-QR-A6H1-01 20 2819277 2819277 C T PCED1A Missense_Mutation p.G187R 0.37 deleterious(0) probably_damaging(0.997) TCGA-QR-A6H1-01 2 141092044 141092044 T C LRP1B Silent p.Q4067Q 0.40 TCGA-QR-A6H1-01 2 17883154 17883154 G A SMC6 Missense_Mutation p.S722F 0.29 tolerated(0.26) benign(0.081) TCGA-QR-A6H1-01 2 183832016 183832016 A G NCKAP1 Missense_Mutation p.I525T 0.44 tolerated(0.2) benign(0.343) TCGA-QR-A6H1-01 2 31628832 31628832 T C XDH Splice_Site p.X15_splice 0.29 TCGA-QR-A6H1-01 3 49027893 49027894 - CA P4HTM Frame_Shift_Ins p.L70Tfs*40 0.20 TCGA-QR-A6H1-01 4 5720980 5720980 C T EVC Silent p.D60D 0.35 TCGA-QR-A6H1-01 5 140236490 140236490 C T PCDHA10 Missense_Mutation p.P286L 0.83 tolerated_low_confidence(0.12) benign(0.013) TCGA-QR-A6H1-01 7 100363053 100363053 G A ZAN Missense_Mutation p.G1449D 0.08 unknown(0) TCGA-QR-A6H1-01 9 109688235 109688235 A G ZNF462 Missense_Mutation p.N681S 0.11 benign(0.014) TCGA-QR-A6H1-01 9 95414857 95414857 G C IPPK Missense_Mutation p.P97R 0.38 deleterious(0) probably_damaging(0.988) TCGA-QR-A6H1-01 X 103040511 103040511 G A PLP1 Missense_Mutation p.G2D 0.77 deleterious(0) probably_damaging(1) TCGA-QR-A6H2-01 10 15883458 15883458 G A FAM188A Missense_Mutation p.P126S 0.11 tolerated(0.26) benign(0.003) TCGA-QR-A6H2-01 10 99376082 99376082 A C MORN4 Missense_Mutation p.C127G 0.33 tolerated(0.06) benign(0.227) TCGA-QR-A6H2-01 11 55371604 55371604 A G OR4C11 Silent p.D82D 0.16 TCGA-QR-A6H2-01 13 113888241 113888241 T C CUL4A Silent p.L236L 0.09 TCGA-QR-A6H2-01 14 50904710 50904710 G C MAP4K5 Silent p.L575L 0.07 TCGA-QR-A6H2-01 15 63926942 63926942 T C HERC1 Missense_Mutation p.Q4187R 0.21 benign(0.257) TCGA-QR-A6H2-01 18 14106297 14106297 A G ZNF519 Missense_Mutation p.L81S 0.46 tolerated(0.06) benign(0.02) TCGA-QR-A6H2-01 3 113145101 113145101 C A WDR52 Missense_Mutation p.A93S 0.05 tolerated(0.44) benign(0.03) TCGA-QR-A6H2-01 4 88767438 88767438 C A MEPE Missense_Mutation p.P473H 0.12 tolerated(0.06) benign(0.357) TCGA-QR-A6H2-01 6 24423344 24423344 C T MRS2 Intron 0.07 TCGA-QR-A6H2-01 8 106815687 106815687 T C ZFPM2 Missense_Mutation p.I1126T 0.12 deleterious(0) probably_damaging(0.999) TCGA-QR-A6H2-01 X 71492543 71492543 G A RPS4X Missense_Mutation p.A257V 0.13 tolerated(0.19) benign(0) TCGA-QR-A6H3-01 10 79580907 79580907 C A DLG5 Missense_Mutation p.R1112L 0.17 deleterious(0) benign(0.241) TCGA-QR-A6H3-01 17 39197281 39197281 G A KRTAP1-1 Silent p.C123C 0.21 TCGA-QR-A6H3-01 17 7365151 7365151 C A ZBTB4 3'UTR 0.17 TCGA-QR-A6H3-01 19 54760448 54760448 A T LILRB5 Missense_Mutation p.S87T 0.20 tolerated(0.2) benign(0.27) TCGA-QR-A6H3-01 1 201982405 201982405 G A ELF3 Missense_Mutation p.E262K 0.23 deleterious(0.05) benign(0.355) TCGA-QR-A6H3-01 7 6085711 6085711 A C EIF2AK1 Silent p.V207V 0.24 TCGA-QR-A6H3-01 8 55541350 55541350 C T RP1 Silent p.Y1636Y 0.05 TCGA-QR-A6H4-01 10 123810032 123810032 C T TACC2 Missense_Mutation p.T38M 0.14 benign(0.335) TCGA-QR-A6H4-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.33 tolerated(0.07) benign(0.069) TCGA-QR-A6H4-01 13 31037849 31037849 T G HMGB1 Intron 0.49 TCGA-QR-A6H4-01 14 105406664 105406664 G C AHNAK2 Missense_Mutation p.Q5042E 0.38 benign(0.081) TCGA-QR-A6H4-01 17 17696337 17696350 ACGCCTAGAGAATT - RAI1 Frame_Shift_Del p.R26Qfs*22 0.62 TCGA-QR-A6H4-01 17 28512696 28512696 C G NSRP1 3'UTR 0.07 TCGA-QR-A6H4-01 19 15839173 15839173 T C OR10H2 Missense_Mutation p.F107S 0.47 deleterious(0) possibly_damaging(0.548) TCGA-QR-A6H4-01 19 36243329 36243329 C T LIN37 Intron 0.36 TCGA-QR-A6H4-01 19 50189933 50189933 G T PRMT1 Missense_Mutation p.G328C 0.49 deleterious(0.02) probably_damaging(0.995) TCGA-QR-A6H4-01 1 153784291 153784291 T C GATAD2B Missense_Mutation p.I522V 0.50 tolerated(1) benign(0.005) TCGA-QR-A6H4-01 1 177928060 177928060 G T SEC16B Missense_Mutation p.A350D 0.09 deleterious(0.02) possibly_damaging(0.799) TCGA-QR-A6H4-01 1 95538490 95538490 C G ALG14 5'UTR 0.44 TCGA-QR-A6H4-01 1 9713899 9713899 G C C1orf200 Missense_Mutation p.Q148E 0.10 deleterious_low_confidence(0) benign(0.092) TCGA-QR-A6H4-01 2 202352282 202352309 ATATCATTCTGAGTTAAACATGTTTTAT - ALS2CR11 3'Flank 0.37 TCGA-QR-A6H4-01 2 61544839 61544839 T A USP34 Missense_Mutation p.N1078Y 0.33 deleterious(0.01) possibly_damaging(0.856) TCGA-QR-A6H4-01 3 148868448 148868448 A G HPS3 Missense_Mutation p.Y409C 0.45 deleterious(0) probably_damaging(0.993) TCGA-QR-A6H4-01 5 5239326 5239326 C T ADAMTS16 Silent p.N739N 0.45 TCGA-QR-A6H4-01 8 121432125 121432125 T G MRPL13 Silent p.T120T 0.31 TCGA-QR-A6H4-01 9 139395286 139395286 C T NOTCH1 Silent p.P1884P 0.44 TCGA-QR-A6H5-01 15 68581943 68581943 A G FEM1B Splice_Site p.X83_splice 0.21 TCGA-QR-A6H5-01 20 56730543 56730543 A G C20orf85 Missense_Mutation p.D57G 0.16 tolerated(0.18) benign(0) TCGA-QR-A6H5-01 20 62698311 62698311 G A TCEA2 Missense_Mutation p.S60N 0.16 deleterious(0.02) probably_damaging(1) TCGA-QR-A6H5-01 21 18937753 18937753 G A CXADR Missense_Mutation p.V281M 0.20 deleterious(0) probably_damaging(0.999) TCGA-QR-A6H5-01 21 44837473 44837473 G A SIK1 Silent p.A642A 0.36 TCGA-QR-A6H5-01 2 73675507 73675507 C T ALMS1 Missense_Mutation p.T617I 0.18 benign(0.408) TCGA-QR-A6H5-01 3 10191489 10191489 G A VHL Missense_Mutation p.R161Q 0.32 deleterious(0.03) probably_damaging(0.966) TCGA-QR-A6H5-01 6 33147561 33147561 C G COL11A2 Missense_Mutation p.G375R 0.06 probably_damaging(0.979) TCGA-QR-A6H6-01 11 71715362 71715362 G - NUMA1 Frame_Shift_Del p.P2011Hfs*4 0.22 TCGA-QR-A6H6-01 19 18648510 18648510 C T FKBP8 Silent p.S282S 0.26 TCGA-QR-A6H6-01 20 35580091 35580091 G C SAMHD1 5'UTR 0.26 TCGA-QR-A6H6-01 2 220466101 220466101 C T STK11IP Missense_Mutation p.S80F 0.12 deleterious(0) probably_damaging(0.999) TCGA-QR-A6H6-01 5 41038870 41038870 G T MROH2B Missense_Mutation p.Q728K 0.08 tolerated(0.56) benign(0.133) TCGA-QR-A6H6-01 6 155154083 155154083 C T SCAF8 Missense_Mutation p.R1124W 0.38 deleterious_low_confidence(0.02) probably_damaging(0.989) TCGA-QR-A6H6-01 6 28294493 28294493 C T ZSCAN31 Missense_Mutation p.S224N 0.04 tolerated(0.33) benign(0.003) TCGA-QR-A6H6-01 6 56044743 56044743 G A COL21A1 Silent p.L91L 0.25 TCGA-QR-A6H6-01 9 127674230 127674230 G C GOLGA1 Missense_Mutation p.L307V 0.09 deleterious(0.01) benign(0.163) TCGA-QR-A6H6-01 9 21970988 21970988 G A CDKN2A Missense_Mutation p.R124C 0.49 tolerated(0.17) benign(0.011) TCGA-QR-A6ZZ-01 11 66638898 66638898 C T PC Silent p.A125A 0.19 TCGA-QR-A6ZZ-01 12 95660174 95660174 T G VEZT Missense_Mutation p.M159R 0.47 tolerated(0.07) possibly_damaging(0.633) TCGA-QR-A6ZZ-01 14 45369991 45369991 A G C14orf28 Missense_Mutation p.Y118C 0.07 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-QR-A6ZZ-01 15 102346304 102346304 A T OR4F6 Nonsense_Mutation p.K128* 0.26 TCGA-QR-A6ZZ-01 17 35627724 35627724 A G ACACA Missense_Mutation p.M346T 0.11 deleterious(0) probably_damaging(0.943) TCGA-QR-A6ZZ-01 1 84878060 84878060 C T DNASE2B Silent p.N192N 0.29 TCGA-QR-A6ZZ-01 2 29551323 29551323 G A ALK Missense_Mutation p.A436V 0.09 tolerated(0.14) probably_damaging(0.997) TCGA-QR-A6ZZ-01 3 183504057 183504057 G A YEATS2 Missense_Mutation p.V961M 0.09 tolerated_low_confidence(0.16) benign(0.014) TCGA-QR-A6ZZ-01 3 54871235 54871235 T C CACNA2D3 Missense_Mutation p.V483A 0.05 deleterious(0) probably_damaging(0.995) TCGA-QR-A6ZZ-01 4 148575325 148575325 C T PRMT10 Missense_Mutation p.V575I 0.09 tolerated(0.19) benign(0) TCGA-QR-A6ZZ-01 5 140501812 140501812 C T PCDHB4 Missense_Mutation p.R78C 0.43 tolerated_low_confidence(0.18) benign(0.008) TCGA-QR-A6ZZ-01 5 176737513 176737513 G A MXD3 Missense_Mutation p.R79W 0.31 deleterious(0) possibly_damaging(0.713) TCGA-QR-A6ZZ-01 9 4605438 4605438 A C SPATA6L Missense_Mutation p.F275C 0.36 tolerated(0.08) possibly_damaging(0.823) TCGA-QR-A6ZZ-01 X 35989875 35989875 T A CXorf22 Missense_Mutation p.S715T 0.39 deleterious(0.01) possibly_damaging(0.716) TCGA-QR-A6ZZ-01 X 53231143 53231143 T C KDM5C Missense_Mutation p.N587D 0.20 tolerated(0.1) probably_damaging(0.982) TCGA-QR-A700-01 11 120349003 120349003 C T ARHGEF12 Missense_Mutation p.T1224I 0.20 tolerated_low_confidence(0.18) benign(0.02) TCGA-QR-A700-01 11 5323027 5323027 A T OR51B4 Missense_Mutation p.D50E 0.30 tolerated(0.55) benign(0.02) TCGA-QR-A700-01 11 63997061 63997061 A G NUDT22 Intron 0.26 TCGA-QR-A700-01 11 73760382 73760382 C A C2CD3 Silent p.L1787L 0.24 TCGA-QR-A700-01 12 105540917 105540917 A G KIAA1033 Missense_Mutation p.N836S 0.20 deleterious(0.03) benign(0.369) TCGA-QR-A700-01 12 110385263 110385263 G C GIT2 Missense_Mutation p.T480R 0.17 tolerated(0.3) benign(0.305) TCGA-QR-A700-01 12 124428894 124428894 G T CCDC92 5'UTR 0.10 TCGA-QR-A700-01 12 133225531 133225531 C T POLE Missense_Mutation p.G1378D 0.20 tolerated(0.11) benign(0.049) TCGA-QR-A700-01 12 58163425 58163425 A C METTL1 Missense_Mutation p.F166V 0.15 deleterious(0) probably_damaging(1) TCGA-QR-A700-01 13 95278279 95278279 C T GPR180 Silent p.S382S 0.06 TCGA-QR-A700-01 14 20404202 20404202 T C OR4K1 Missense_Mutation p.I126T 0.10 deleterious(0) probably_damaging(0.998) TCGA-QR-A700-01 14 24879189 24879189 C T NYNRIN Missense_Mutation p.T730I 0.65 deleterious_low_confidence(0.02) possibly_damaging(0.529) TCGA-QR-A700-01 16 23366679 23366679 G A SCNN1B Silent p.L215L 0.17 TCGA-QR-A700-01 16 50707709 50707709 G T SNX20 Missense_Mutation p.P187T 0.27 deleterious(0.03) possibly_damaging(0.904) TCGA-QR-A700-01 16 75263909 75263909 C A BCAR1 Nonsense_Mutation p.E751* 0.15 TCGA-QR-A700-01 17 1675256 1675256 T G SERPINF1 Missense_Mutation p.L177R 0.22 deleterious(0) probably_damaging(0.997) TCGA-QR-A700-01 18 42532687 42532687 A G SETBP1 Missense_Mutation p.M1128V 0.16 tolerated(0.42) benign(0.001) TCGA-QR-A700-01 19 15582761 15582761 T C PGLYRP2 Missense_Mutation p.N428S 0.30 tolerated(0.19) benign(0.034) TCGA-QR-A700-01 19 18507760 18507760 A C LRRC25 Missense_Mutation p.L5R 0.12 tolerated(0.08) possibly_damaging(0.902) TCGA-QR-A700-01 1 173950089 173950089 T C RC3H1 Missense_Mutation p.Y276C 0.15 deleterious(0) possibly_damaging(0.855) TCGA-QR-A700-01 1 24080933 24080933 A T TCEB3 Missense_Mutation p.I618L 0.34 tolerated(0.17) possibly_damaging(0.531) TCGA-QR-A700-01 1 247737617 247737617 G T GCSAML Missense_Mutation p.R114M 0.14 deleterious(0) possibly_damaging(0.785) TCGA-QR-A700-01 1 7837366 7837366 G A VAMP3 Nonsense_Mutation p.W73* 0.41 TCGA-QR-A700-01 21 45401061 45401061 G A AGPAT3 Silent p.V345V 0.42 TCGA-QR-A700-01 22 50903079 50903079 C A SBF1 Missense_Mutation p.R507L 0.07 tolerated(0.4) benign(0.007) TCGA-QR-A700-01 2 103120167 103120167 G A SLC9A4 Splice_Site p.X327_splice 0.20 TCGA-QR-A700-01 2 113306903 113306903 G T POLR1B Missense_Mutation p.M184I 0.10 deleterious(0.04) benign(0.347) TCGA-QR-A700-01 2 158300465 158300465 G A CYTIP Missense_Mutation p.A23V 0.08 tolerated(0.13) benign(0.003) TCGA-QR-A700-01 2 160604779 160604779 C T MARCH7 Silent p.S326S 0.07 TCGA-QR-A700-01 3 113723435 113723435 C A KIAA1407 Intron 0.26 TCGA-QR-A700-01 3 154055525 154055525 G A GPR149 Missense_Mutation p.A720V 0.29 tolerated(0.1) probably_damaging(0.998) TCGA-QR-A700-01 3 20215850 20215850 A T SGOL1 Missense_Mutation p.N391K 0.23 tolerated(0.13) benign(0.079) TCGA-QR-A700-01 4 158255181 158255181 T C GRIA2 Missense_Mutation p.V392A 0.67 tolerated(0.53) benign(0) TCGA-QR-A700-01 5 133914681 133914681 G A JADE2 Missense_Mutation p.E683K 0.12 tolerated(0.8) benign(0) TCGA-QR-A700-01 5 140590412 140590412 A G PCDHB12 Missense_Mutation p.K645E 0.14 deleterious_low_confidence(0) possibly_damaging(0.72) TCGA-QR-A700-01 6 29454798 29454798 G T MAS1L Silent p.T294T 0.24 TCGA-QR-A700-01 6 99854007 99854007 T G PNISR Missense_Mutation p.E301A 0.11 tolerated(0.07) possibly_damaging(0.839) TCGA-QR-A700-01 7 103807333 103807333 C T ORC5 Splice_Site p.X293_splice 0.08 TCGA-QR-A700-01 7 108143061 108143061 C A PNPLA8 Missense_Mutation p.R411L 0.31 deleterious(0) possibly_damaging(0.595) TCGA-QR-A700-01 7 148497705 148497705 G A CUL1 3'UTR 0.06 TCGA-QR-A700-01 7 43917245 43917245 A C URGCP Missense_Mutation p.L606R 0.26 deleterious(0) benign(0.016) TCGA-QR-A700-01 7 99661935 99661935 G T ZSCAN21 Missense_Mutation p.G373C 0.18 deleterious(0.01) possibly_damaging(0.642) TCGA-QR-A700-01 8 77763289 77763289 T G ZFHX4 Missense_Mutation p.L1378V 0.38 possibly_damaging(0.567) TCGA-QR-A700-01 8 88886083 88886083 G A DCAF4L2 Silent p.F39F 0.23 TCGA-QR-A700-01 X 3239395 3239395 G T MXRA5 Nonsense_Mutation p.S1444* 0.14 TCGA-QR-A700-01 X 49963360 49963360 C T AKAP4 Missense_Mutation p.C24Y 0.40 deleterious(0) probably_damaging(0.998) TCGA-QR-A702-01 10 121565969 121565969 G A INPP5F Missense_Mutation p.A473T 0.15 deleterious(0.01) benign(0.314) TCGA-QR-A702-01 14 65220494 65220494 C T SPTB Silent p.T2121T 0.08 TCGA-QR-A702-01 16 75263909 75263909 C T BCAR1 Missense_Mutation p.E751K 0.51 tolerated(0.22) probably_damaging(0.998) TCGA-QR-A702-01 17 29552214 29552215 - G NF1 Frame_Shift_Ins p.L650Vfs*20 0.41 TCGA-QR-A702-01 1 17930054 17930054 T G ARHGEF10L Missense_Mutation p.V134G 0.41 deleterious(0) probably_damaging(0.996) TCGA-QR-A702-01 1 19644309 19644309 T G PQLC2 Missense_Mutation p.I46M 0.15 tolerated(0.14) probably_damaging(0.926) TCGA-QR-A702-01 3 53290001 53290001 G A TKT 5'UTR 0.50 TCGA-QR-A702-01 7 2412395 2412395 A G EIF3B Missense_Mutation p.Y592C 0.11 deleterious(0) probably_damaging(0.993) TCGA-QR-A702-01 7 30695314 30695314 G C CRHR2 Missense_Mutation p.T339S 0.41 tolerated(0.06) possibly_damaging(0.72) TCGA-QR-A702-01 X 1501458 1501458 T A IL3RA 3'UTR 0.56 TCGA-QR-A702-01 X 3238548 3238548 G A MXRA5 Silent p.S1726S 0.32 TCGA-QR-A702-01 X 63412960 63412960 C A AMER1 Silent p.L69L 0.52 TCGA-QR-A703-01 11 47712201 47712201 C T AGBL2 Nonsense_Mutation p.W353* 0.51 TCGA-QR-A703-01 19 42398295 42398295 C T ARHGEF1 Silent p.N235N 0.18 TCGA-QR-A703-01 1 46073584 46073584 T G NASP Missense_Mutation p.V334G 0.07 deleterious_low_confidence(0) benign(0.118) TCGA-QR-A703-01 22 37602845 37602845 C T SSTR3 Missense_Mutation p.R333H 0.09 tolerated(0.07) probably_damaging(0.991) TCGA-QR-A703-01 2 113089358 113089358 G A ZC3H6 Missense_Mutation p.G955S 0.09 tolerated(1) benign(0.003) TCGA-QR-A705-01 10 31812941 31812941 G T ZEB1 Missense_Mutation p.K895N 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-QR-A705-01 17 32612743 32612743 C A CCL11 5'UTR 0.15 TCGA-QR-A705-01 18 61565020 61565020 A G SERPINB2 Silent p.L159L 0.35 TCGA-QR-A705-01 2 198948751 198948751 A G PLCL1 Silent p.K170K 0.07 TCGA-QR-A705-01 5 141309157 141309157 A G KIAA0141 Silent p.Q141Q 0.06 TCGA-QR-A705-01 5 89770075 89770076 AG - MBLAC2 Frame_Shift_Del p.L12Rfs*103 0.30 TCGA-QR-A705-01 6 25799051 25799051 G T SLC17A1 Missense_Mutation p.Q456K 0.04 deleterious(0) probably_damaging(0.997) TCGA-QR-A705-01 7 803452 803452 A G HEATR2 Missense_Mutation p.T542A 0.34 tolerated(0.21) benign(0.008) TCGA-QR-A705-01 8 124526522 124526522 G C FBXO32 Missense_Mutation p.Q142E 0.30 deleterious(0.03) benign(0.307) TCGA-QR-A705-01 9 101984637 101984637 A G SEC61B 5'UTR 0.13 TCGA-QR-A705-01 9 125145882 125145882 T C PTGS1 Missense_Mutation p.V286A 0.32 tolerated(0.07) possibly_damaging(0.484) TCGA-QR-A705-01 9 137804991 137804991 T A FCN1 Splice_Site p.X114_splice 0.13 TCGA-QR-A705-01 9 79267432 79267432 C T PRUNE2 Missense_Mutation p.D2842N 0.04 deleterious(0) probably_damaging(0.951) TCGA-QR-A705-01 X 8536370 8536370 A G KAL1 Silent p.Y370Y 0.07 TCGA-QR-A706-01 11 64494798 64494798 A T RASGRP2 Missense_Mutation p.D602E 0.04 tolerated_low_confidence(0.19) benign(0.034) TCGA-QR-A706-01 12 2017138 2017138 G A CACNA2D4 Silent p.G184G 0.05 TCGA-QR-A706-01 15 31342749 31342749 C A TRPM1 Missense_Mutation p.A451S 0.07 tolerated(0.37) benign(0.007) TCGA-QR-A706-01 16 24104120 24104120 G T PRKCB Missense_Mutation p.A180S 0.04 tolerated(0.06) possibly_damaging(0.856) TCGA-QR-A706-01 17 66982411 66982411 G A ABCA9 Missense_Mutation p.P1368S 0.22 deleterious(0.01) probably_damaging(0.973) TCGA-QR-A706-01 17 71232433 71232433 C T C17orf80 Missense_Mutation p.P271L 0.09 tolerated(0.3) benign(0.234) TCGA-QR-A706-01 19 17831773 17831773 C T MAP1S Silent p.G49G 0.06 TCGA-QR-A706-01 1 155207218 155207218 G A GBA Missense_Mutation p.P305S 0.25 deleterious(0) probably_damaging(0.998) TCGA-QR-A706-01 1 7725039 7725039 G A CAMTA1 Missense_Mutation p.R811Q 0.03 tolerated_low_confidence(0.1) possibly_damaging(0.801) TCGA-QR-A706-01 3 189704595 189704595 C A LEPREL1 Silent p.G390G 0.05 TCGA-QR-A706-01 X 77258626 77258626 C G ATP7A Missense_Mutation p.P534A 0.03 tolerated(0.11) benign(0.079) TCGA-QR-A707-01 10 90365406 90365406 A T LIPJ Missense_Mutation p.H271L 0.04 tolerated(0.17) benign(0.139) TCGA-QR-A707-01 16 56396195 56396195 G A AMFR 3'UTR 0.08 TCGA-QR-A707-01 17 3981268 3981268 G A ZZEF1 Silent p.S966S 0.06 TCGA-QR-A707-01 17 6589585 6589585 C T SLC13A5 Missense_Mutation p.A550T 0.06 tolerated(0.52) benign(0.035) TCGA-QR-A707-01 1 196254823 196254823 C A KCNT2 Silent p.V887V 0.08 TCGA-QR-A707-01 22 21800664 21800664 C T HIC2 Missense_Mutation p.P494S 0.43 tolerated(0.56) benign(0.29) TCGA-QR-A707-01 2 96072903 96072903 C A FAHD2A Missense_Mutation p.Q154K 0.05 tolerated(0.6) benign(0.004) TCGA-QR-A707-01 5 66479625 66479625 T A CD180 Missense_Mutation p.H349L 0.10 tolerated(0.12) possibly_damaging(0.807) TCGA-QR-A707-01 6 108840904 108840904 G A LACE1 Missense_Mutation p.R403H 0.26 deleterious(0) probably_damaging(0.985) TCGA-QR-A707-01 6 27419847 27419847 C T ZNF184 Silent p.T497T 0.06 TCGA-QR-A707-01 6 30954121 30954121 G A MUC21 Missense_Mutation p.V57I 0.05 tolerated_low_confidence(0.61) unknown(0) TCGA-QR-A707-01 X 102339403 102339403 G A NXF3 Missense_Mutation p.P73L 0.11 tolerated(0.64) benign(0.005) TCGA-QR-A707-01 X 153695647 153695647 C T PLXNA3 Missense_Mutation p.R1092W 0.44 deleterious(0.02) possibly_damaging(0.521) TCGA-QR-A708-01 11 56511186 56511186 T - OR9G4 Frame_Shift_Del p.D35Ifs*13 0.09 TCGA-QR-A708-01 12 9256869 9256869 G C A2M Missense_Mutation p.T411S 0.10 deleterious(0) benign(0.06) TCGA-QR-A708-01 13 52742043 52742043 G A MRPS31P5 RNA 0.33 TCGA-QR-A708-01 14 45523651 45523651 A G FAM179B Silent p.P1433P 0.23 TCGA-QR-A708-01 16 1551468 1551468 C G TELO2 Silent p.P443P 0.62 TCGA-QR-A708-01 17 39334038 39334038 G A KRTAP4-2 Missense_Mutation p.R127C 0.30 deleterious(0) possibly_damaging(0.898) TCGA-QR-A708-01 17 45894036 45894036 G C OSBPL7 Missense_Mutation p.P274R 0.11 deleterious(0) probably_damaging(0.999) TCGA-QR-A708-01 19 22940079 22940079 C A ZNF99 3'Flank 0.21 TCGA-QR-A708-01 19 6454709 6454709 C A SLC25A23 Missense_Mutation p.C168F 0.27 deleterious(0.04) benign(0.397) TCGA-QR-A708-01 1 158517139 158517139 C T OR6Y1 Missense_Mutation p.V253I 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-QR-A708-01 1 207014409 207014409 G A IL19 Missense_Mutation p.D180N 0.23 tolerated(0.29) benign(0.013) TCGA-QR-A708-01 20 23860252 23860252 C A CST5 Missense_Mutation p.G21V 0.31 tolerated(0.54) benign(0.026) TCGA-QR-A708-01 2 170492941 170492945 AAAAG - PPIG Frame_Shift_Del p.E393Sfs*6 0.25 TCGA-QR-A708-01 2 179469737 179469737 C T TTN Missense_Mutation p.R18056Q 0.39 TCGA-QR-A708-01 3 111603238 111603238 T C PHLDB2 Missense_Mutation p.M105T 0.54 tolerated_low_confidence(0.85) benign(0) TCGA-QR-A708-01 3 169993051 169993051 G A PRKCI Silent p.L227L 0.04 TCGA-QR-A708-01 3 49160646 49160646 G T LAMB2 Missense_Mutation p.S1381R 0.59 tolerated(1) benign(0) TCGA-QR-A708-01 3 49160648 49160648 T A LAMB2 Missense_Mutation p.S1381C 0.59 deleterious(0) benign(0.325) TCGA-QR-A708-01 3 88104673 88104673 G T CGGBP1 Missense_Mutation p.P152T 0.09 deleterious(0.01) possibly_damaging(0.857) TCGA-QR-A708-01 3 95374420 95374420 A G MTHFD2P1 RNA 0.06 TCGA-QR-A708-01 9 35060506 35060506 G A VCP Missense_Mutation p.P500L 0.28 deleterious(0) probably_damaging(1) TCGA-QR-A708-01 X 107334934 107334934 C A ATG4A 5'UTR 0.33 TCGA-QR-A70A-01 10 123245036 123245036 C T FGFR2 Missense_Mutation p.G691R 0.12 deleterious(0) probably_damaging(1) TCGA-QR-A70A-01 11 58959666 58959666 A G DTX4 Silent p.R439R 0.16 TCGA-QR-A70A-01 15 80767549 80767549 G A ARNT2 Missense_Mutation p.E203K 0.19 deleterious(0) benign(0.012) TCGA-QR-A70A-01 15 90293205 90293205 G C MESP1 3'UTR 0.25 TCGA-QR-A70A-01 17 42854139 42854139 C T ADAM11 Silent p.D531D 0.37 TCGA-QR-A70A-01 19 17412054 17412054 C T ABHD8 Silent p.P124P 0.09 TCGA-QR-A70A-01 1 12726517 12726517 T A AADACL4 Missense_Mutation p.V332D 0.21 deleterious(0) possibly_damaging(0.756) TCGA-QR-A70A-01 2 85276609 85276609 C T KCMF1 Missense_Mutation p.A241V 0.07 tolerated(0.54) benign(0.214) TCGA-QR-A70A-01 5 139908666 139908666 T G ANKHD1 Silent p.S2045S 0.34 TCGA-QR-A70A-01 6 37328329 37328329 A G RNF8 Silent p.Q73Q 0.18 TCGA-QR-A70A-01 X 142717979 142717979 C A SLITRK4 Missense_Mutation p.V316F 0.17 tolerated(0.08) possibly_damaging(0.691) TCGA-QR-A70A-01 X 48759214 48759214 C A PQBP1 Missense_Mutation p.P63T 0.06 tolerated(0.19) probably_damaging(0.989) TCGA-QR-A70A-01 X 53570843 53570843 G A HUWE1 Missense_Mutation p.R3780C 0.45 unknown(0) TCGA-QR-A70C-01 10 44112593 44112593 A G ZNF485 Missense_Mutation p.T368A 0.19 tolerated(0.77) benign(0.025) TCGA-QR-A70C-01 12 70048984 70048984 G A BEST3 Silent p.S570S 0.42 TCGA-QR-A70C-01 13 50065986 50065986 A T SETDB2 3'UTR 0.07 TCGA-QR-A70C-01 17 1381197 1381197 G A MYO1C Silent p.I490I 0.05 TCGA-QR-A70C-01 19 42584442 42584442 C T ZNF574 Nonsense_Mutation p.Q562* 0.06 TCGA-QR-A70C-01 1 248059477 248059477 G A OR2W3 Missense_Mutation p.G197S 0.05 tolerated(0.33) benign(0.023) TCGA-QR-A70C-01 20 45910870 45910870 G A ZMYND8 Missense_Mutation p.A325V 0.06 tolerated(0.66) benign(0.061) TCGA-QR-A70C-01 2 178095651 178095651 T C NFE2L2 Silent p.L560L 0.05 TCGA-QR-A70C-01 2 191231466 191231466 C G INPP1 Missense_Mutation p.A104G 0.06 tolerated(0.06) benign(0.01) TCGA-QR-A70C-01 2 69179998 69179998 C A GKN2 5'UTR 0.20 TCGA-QR-A70C-01 4 71500137 71500137 C G ENAM Nonsense_Mutation p.S108* 0.16 TCGA-QR-A70C-01 5 55259298 55259298 T C IL6ST Missense_Mutation p.N232S 0.22 tolerated(0.66) benign(0.002) TCGA-QR-A70C-01 7 23213904 23213904 C A KLHL7 Missense_Mutation p.T583N 0.33 tolerated_low_confidence(0.11) benign(0.403) TCGA-QR-A70C-01 9 139302344 139302344 T C SDCCAG3 Silent p.R112R 0.07 TCGA-QR-A70C-01 X 70756122 70756122 C T OGT Silent p.C44C 0.43 TCGA-QR-A70D-01 11 3681252 3681252 G A ART1 Missense_Mutation p.G168D 0.08 tolerated(0.35) benign(0.005) TCGA-QR-A70D-01 12 30818753 30818753 A G IPO8 Silent p.C416C 0.41 TCGA-QR-A70D-01 12 49938149 49938149 C T KCNH3 Silent p.S391S 0.39 TCGA-QR-A70D-01 12 57009121 57009121 T C BAZ2A Missense_Mutation p.H138R 0.11 deleterious(0.01) probably_damaging(0.985) TCGA-QR-A70D-01 17 4937900 4937900 A G SLC52A1 Translation_Start_Site p.M1? 0.47 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-QR-A70D-01 19 14208594 14208594 G A PRKACA Silent p.D176D 0.36 TCGA-QR-A70D-01 19 50720881 50720881 G A MYH14 Missense_Mutation p.G139S 0.35 deleterious(0) probably_damaging(0.998) TCGA-QR-A70D-01 22 41735127 41735127 G A ZC3H7B Missense_Mutation p.D250N 0.38 tolerated(0.32) benign(0.068) TCGA-QR-A70D-01 3 138382751 138382751 G A PIK3CB Silent p.G931G 0.10 TCGA-QR-A70D-01 9 3263080 3263080 G A RFX3 Missense_Mutation p.A487V 0.07 tolerated(0.17) benign(0.027) TCGA-QR-A70D-01 X 107936078 107936078 C T COL4A5 Silent p.Y1543Y 0.41 TCGA-QR-A70D-01 X 70603867 70603867 C T TAF1 Missense_Mutation p.T688I 0.42 deleterious(0) probably_damaging(0.992) TCGA-QR-A70E-01 10 129913862 129913862 G A MKI67 Silent p.Y270Y 0.07 TCGA-QR-A70E-01 11 64359373 64359373 G A SLC22A12 Silent p.P115P 0.90 TCGA-QR-A70E-01 11 86382833 86382833 C T ME3 Missense_Mutation p.D52N 0.09 tolerated(0.13) benign(0.033) TCGA-QR-A70E-01 12 10587970 10587970 A T KLRC2 Missense_Mutation p.L76Q 0.29 deleterious(0) probably_damaging(1) TCGA-QR-A70E-01 12 122999719 122999724 TCCGGC - RSRC2 In_Frame_Del p.S218_R219del 0.09 TCGA-QR-A70E-01 18 21474265 21474265 G A LAMA3 Missense_Mutation p.C1805Y 0.07 probably_damaging(0.954) TCGA-QR-A70E-01 3 51455620 51455620 C A VPRBP Missense_Mutation p.W727C 0.23 deleterious(0) probably_damaging(0.965) TCGA-QR-A70E-01 6 33163151 33163151 A G RXRB Missense_Mutation p.L450P 0.40 deleterious(0) probably_damaging(1) TCGA-QR-A70E-01 9 103109543 103109543 T A TEX10 Missense_Mutation p.D109V 0.14 deleterious(0) probably_damaging(1) TCGA-QR-A70E-01 X 49034506 49034506 G A PRICKLE3 Missense_Mutation p.T264M 0.44 deleterious(0.01) probably_damaging(0.983) TCGA-QR-A70E-01 X 53588818 53588818 T C HUWE1 Missense_Mutation p.E2469G 0.15 benign(0.403) TCGA-QR-A70G-01 11 1272055 1272055 G A MUC5B Missense_Mutation p.A4649T 0.52 unknown(0) TCGA-QR-A70G-01 14 23311796 23311796 T A MMP14 Missense_Mutation p.H186Q 0.25 deleterious(0) probably_damaging(1) TCGA-QR-A70G-01 14 50146494 50146494 G C POLE2 Missense_Mutation p.S65C 0.31 tolerated(0.08) benign(0.012) TCGA-QR-A70G-01 14 63174996 63174996 G A KCNH5 Nonsense_Mutation p.Q733* 0.22 TCGA-QR-A70G-01 14 91875056 91875056 G A CCDC88C Missense_Mutation p.L73F 0.11 deleterious(0) probably_damaging(0.996) TCGA-QR-A70G-01 19 14043665 14043665 C T PODNL1 Silent p.R464R 0.28 TCGA-QR-A70G-01 19 47228840 47228840 G A STRN4 Silent p.Y445Y 0.40 TCGA-QR-A70G-01 19 55421398 55421398 C T NCR1 Missense_Mutation p.L219F 0.10 tolerated(0.41) benign(0.016) TCGA-QR-A70G-01 1 109270464 109270464 G T FNDC7 Missense_Mutation p.L382F 0.13 tolerated(0.46) benign(0.003) TCGA-QR-A70G-01 20 15480461 15480461 T C MACROD2 Missense_Mutation p.I205T 0.43 tolerated(0.17) benign(0.159) TCGA-QR-A70G-01 2 179596174 179596174 G A TTN Silent p.D5773D 0.31 TCGA-QR-A70G-01 2 239186523 239186523 C A PER2 Missense_Mutation p.V19L 0.09 tolerated(0.45) benign(0) TCGA-QR-A70G-01 2 55237310 55237310 A C RTN4 Intron 0.33 TCGA-QR-A70G-01 3 112987285 112987285 C A BOC Silent p.A172A 0.16 TCGA-QR-A70G-01 4 164246696 164246696 C G NPY1R Missense_Mutation p.C305S 0.11 deleterious(0.02) probably_damaging(0.967) TCGA-QR-A70G-01 4 46252463 46252463 T G GABRA2 Missense_Mutation p.E406D 0.15 tolerated(0.29) benign(0.075) TCGA-QR-A70G-01 6 160645781 160645781 C T SLC22A2 Silent p.G519G 0.23 TCGA-QR-A70G-01 6 42832767 42832767 G T GLTSCR1L Silent p.R941R 0.08 TCGA-QR-A70G-01 7 45956263 45956263 G A IGFBP3 Missense_Mutation p.P218S 0.06 deleterious(0) probably_damaging(0.999) TCGA-QR-A70G-01 9 112182720 112182720 G T PTPN3 Silent p.R433R 0.07 TCGA-QR-A70H-01 11 124180178 124180178 G A OR8D1 Missense_Mutation p.A162V 0.10 deleterious(0.04) benign(0.018) TCGA-QR-A70H-01 11 62488846 62488846 A - HNRNPUL2 Frame_Shift_Del p.L511* 0.23 TCGA-QR-A70H-01 13 32968858 32968858 T C BRCA2 Missense_Mutation p.C3097R 0.34 tolerated(0.05) possibly_damaging(0.894) TCGA-QR-A70H-01 16 74502950 74502950 A C GLG1 Missense_Mutation p.V777G 0.34 deleterious(0.03) probably_damaging(0.954) TCGA-QR-A70H-01 17 36873756 36873756 C T MLLT6 Missense_Mutation p.L575F 0.28 deleterious(0.01) unknown(0) TCGA-QR-A70H-01 19 2936578 2936578 T G ZNF77 Missense_Mutation p.E85D 0.37 deleterious(0.03) benign(0.224) TCGA-QR-A70H-01 2 219924911 219924911 G C IHH Missense_Mutation p.D93E 0.23 deleterious(0) probably_damaging(0.994) TCGA-QR-A70H-01 5 162886940 162886940 G T NUDCD2 Silent p.R39R 0.40 TCGA-QR-A70H-01 5 162886941 162886941 C T NUDCD2 Missense_Mutation p.R39H 0.40 tolerated(0.15) benign(0.011) TCGA-QR-A70H-01 6 36343733 36343733 G A ETV7 Silent p.C74C 0.40 TCGA-QR-A70H-01 8 37697651 37697651 C G GPR124 Missense_Mutation p.L842V 0.11 deleterious(0) probably_damaging(0.999) TCGA-QR-A70H-01 8 66617057 66617057 A G MTFR1 Missense_Mutation p.N137S 0.54 tolerated(0.05) benign(0.262) TCGA-QR-A70H-01 9 79322065 79322065 C T PRUNE2 Missense_Mutation p.V1709I 0.46 tolerated(0.2) benign(0.006) TCGA-QR-A70I-01 10 1175299 1175299 C A WDR37 3'UTR 0.06 TCGA-QR-A70I-01 11 124761327 124761327 G A ROBO4 Missense_Mutation p.R606C 0.50 tolerated(0.19) benign(0.003) TCGA-QR-A70I-01 1 228464238 228464238 C T OBSCN Missense_Mutation p.A2478V 0.06 possibly_damaging(0.521) TCGA-QR-A70I-01 3 42734235 42734235 G A HHATL 3'UTR 0.10 TCGA-QR-A70I-01 7 91623993 91623993 C A AKAP9 Missense_Mutation p.A212D 0.06 probably_damaging(0.999) TCGA-QR-A70I-01 9 5069080 5069080 A C JAK2 Missense_Mutation p.Y462S 0.36 deleterious(0.01) benign(0.27) TCGA-QR-A70J-01 10 123970864 123970864 C A TACC2 Silent p.P2308P 0.25 TCGA-QR-A70J-01 10 69882049 69882049 G A MYPN Missense_Mutation p.R285Q 0.15 tolerated(0.08) possibly_damaging(0.453) TCGA-QR-A70J-01 11 1155162 1155162 C T MUC5AC Missense_Mutation p.A57V 0.10 tolerated(1) benign(0) TCGA-QR-A70J-01 11 64056826 64056826 C T GPR137 Missense_Mutation p.P473S 0.04 tolerated_low_confidence(0.07) benign(0.02) TCGA-QR-A70J-01 15 68497808 68497808 G A CALML4 5'UTR 0.18 TCGA-QR-A70J-01 17 7756355 7756355 C G KDM6B Missense_Mutation p.Q1550E 0.13 possibly_damaging(0.502) TCGA-QR-A70J-01 19 36585023 36585023 A T WDR62 Silent p.P808P 0.10 TCGA-QR-A70J-01 1 164815998 164815998 G A PBX1 3'UTR 0.16 TCGA-QR-A70J-01 1 17597607 17597607 C T PADI3 Silent p.A327A 0.11 TCGA-QR-A70J-01 20 56918775 56918775 G A RAB22A Missense_Mutation p.A40T 0.05 deleterious(0) probably_damaging(0.986) TCGA-QR-A70J-01 2 107460204 107460204 C T ST6GAL2 Missense_Mutation p.R77H 0.21 benign(0.001) TCGA-QR-A70J-01 2 11333967 11333967 G A ROCK2 Nonsense_Mutation p.R1209* 0.09 TCGA-QR-A70J-01 3 33592821 33592821 T G CLASP2 Missense_Mutation p.N1034H 0.27 deleterious(0) probably_damaging(0.998) TCGA-QR-A70J-01 3 49151652 49151652 G A USP19 Silent p.L784L 0.23 TCGA-QR-A70J-01 3 75476706 75476706 C T FAM86DP RNA 0.10 TCGA-QR-A70J-01 4 146650336 146650336 G T C4orf51 Missense_Mutation p.D128Y 0.10 tolerated(0.75) benign(0.064) TCGA-QR-A70J-01 4 8605723 8605723 G A CPZ Missense_Mutation p.A173T 0.08 tolerated(0.42) benign(0.007) TCGA-QR-A70J-01 4 90816482 90816482 C T MMRN1 Silent p.N120N 0.19 TCGA-QR-A70J-01 5 147504400 147504400 G T SPINK5 Missense_Mutation p.K913N 0.21 deleterious(0.04) probably_damaging(0.984) TCGA-QR-A70K-01 11 130785052 130785052 G C SNX19 Missense_Mutation p.H261Q 0.20 deleterious(0.01) possibly_damaging(0.868) TCGA-QR-A70K-01 11 55653270 55653270 G A TRIM51 Silent p.R122R 0.10 TCGA-QR-A70K-01 12 10462061 10462061 G T KLRD1 Nonsense_Mutation p.G28* 0.19 TCGA-QR-A70K-01 12 106897897 106897897 G A POLR3B Missense_Mutation p.R1046H 0.04 deleterious(0) probably_damaging(1) TCGA-QR-A70K-01 12 123467300 123467300 C G ARL6IP4 3'UTR 0.59 TCGA-QR-A70K-01 14 24592285 24592285 C T DCAF11 Missense_Mutation p.S502L 0.23 deleterious(0) probably_damaging(0.984) TCGA-QR-A70K-01 14 92470283 92470283 T C TRIP11 Missense_Mutation p.Q1346R 0.21 tolerated(0.2) benign(0.005) TCGA-QR-A70K-01 15 62253881 62253881 T C VPS13C Missense_Mutation p.H1272R 0.34 tolerated(0.18) benign(0.017) TCGA-QR-A70K-01 17 36881820 36881820 A G MLLT6 Missense_Mutation p.K1084R 0.12 deleterious_low_confidence(0.04) benign(0.118) TCGA-QR-A70K-01 17 41003755 41003755 G A AOC3 Missense_Mutation p.R132K 0.17 tolerated(0.6) benign(0.009) TCGA-QR-A70K-01 18 246364 246364 C T THOC1 Missense_Mutation p.G293E 0.15 tolerated(0.19) possibly_damaging(0.795) TCGA-QR-A70K-01 1 157716505 157716505 C T FCRL2 3'UTR 0.26 TCGA-QR-A70K-01 1 158549598 158549598 A G OR10X1 Missense_Mutation p.V31A 0.08 tolerated(0.05) benign(0.002) TCGA-QR-A70K-01 1 26372408 26372409 - GCAGCCGC SLC30A2 5'UTR 0.68 TCGA-QR-A70K-01 20 25273158 25273158 G A PYGB Missense_Mutation p.A696T 0.21 deleterious(0) probably_damaging(0.986) TCGA-QR-A70K-01 20 37576619 37576619 T A FAM83D Missense_Mutation p.I281N 0.13 tolerated(0.18) benign(0.166) TCGA-QR-A70K-01 22 39085109 39085109 T C JOSD1 Missense_Mutation p.N114D 0.30 tolerated(0.1) probably_damaging(0.995) TCGA-QR-A70K-01 2 1418187 1418187 G A TPO Missense_Mutation p.A3T 0.30 tolerated(0.51) benign(0.002) TCGA-QR-A70K-01 2 172841113 172841113 A G HAT1 Missense_Mutation p.S281G 0.93 tolerated(0.13) benign(0.001) TCGA-QR-A70K-01 2 179255937 179255937 G T OSBPL6 Missense_Mutation p.W838C 0.82 deleterious(0) probably_damaging(1) TCGA-QR-A70K-01 3 109027103 109027103 C T DPPA2 Missense_Mutation p.R145Q 0.10 tolerated(0.35) benign(0.234) TCGA-QR-A70K-01 3 187089150 187089150 A G RTP4 Missense_Mutation p.T244A 0.38 tolerated_low_confidence(0.06) benign(0.184) TCGA-QR-A70K-01 4 15989292 15989292 T A PROM1 Silent p.G708G 0.17 TCGA-QR-A70K-01 5 175764121 175764121 G C SIMC1 Silent p.L361L 0.17 TCGA-QR-A70K-01 6 139488311 139488311 C T HECA Missense_Mutation p.L388F 0.21 deleterious(0) probably_damaging(0.997) TCGA-QR-A70K-01 7 129948219 129948219 T G CPA4 Missense_Mutation p.W259G 0.09 deleterious(0) probably_damaging(0.998) TCGA-QR-A70K-01 7 143049096 143049096 G T CLCN1 3'UTR 0.21 TCGA-QR-A70K-01 7 99054072 99054072 C T CPSF4 Silent p.H253H 0.39 TCGA-QR-A70K-01 9 123742463 123742463 A C C5 Missense_Mutation p.F1186V 0.21 deleterious(0.01) benign(0.426) TCGA-QR-A70K-01 9 35092369 35092369 C T PIGO Silent p.E505E 0.16 TCGA-QR-A70K-01 9 441994 441994 C T DOCK8 Silent p.I1825I 0.10 TCGA-QR-A70K-01 X 216090 216090 G T PLCXD1 3'UTR 0.33 TCGA-QR-A70K-01 X 76709702 76709702 A G FGF16 Missense_Mutation p.D19G 0.38 benign(0.025) TCGA-QR-A70M-01 10 50724947 50724947 C T ERCC6-PGBD3 Missense_Mutation p.E540K 0.06 tolerated_low_confidence(0.51) unknown(0) TCGA-QR-A70M-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.85 tolerated(0.07) benign(0.069) TCGA-QR-A70M-01 12 2659177 2659177 G T CACNA1C Nonsense_Mutation p.E487* 0.24 TCGA-QR-A70M-01 14 101506628 101506628 T C MIR654 RNA 0.38 TCGA-QR-A70M-01 17 58156220 58156220 G A HEATR6 Missense_Mutation p.P19L 0.14 tolerated_low_confidence(0.06) benign(0.001) TCGA-QR-A70M-01 1 21573845 21573845 G A ECE1 Silent p.P344P 0.09 TCGA-QR-A70M-01 7 135370341 135370341 C T SLC13A4 Missense_Mutation p.V512M 0.42 deleterious(0) probably_damaging(0.996) TCGA-QR-A70M-01 7 149545325 149545325 T C ZNF862 Missense_Mutation p.L248P 0.52 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-QR-A70M-01 7 48314803 48314803 T G ABCA13 Missense_Mutation p.M1847R 0.43 benign(0.008) TCGA-QR-A70M-01 7 50595871 50595871 C T DDC Silent p.L226L 0.19 TCGA-QR-A70M-01 8 134232871 134232871 G A WISP1 Missense_Mutation p.G133S 0.38 deleterious(0.03) probably_damaging(0.941) TCGA-QR-A70N-01 11 5510364 5510364 T A OR52D1 Missense_Mutation p.V143D 0.05 deleterious(0) possibly_damaging(0.534) TCGA-QR-A70N-01 12 72030395 72030395 G - ZFC3H1 Frame_Shift_Del p.L659* 0.23 TCGA-QR-A70N-01 12 7651662 7651662 A T CD163 Missense_Mutation p.S194T 0.04 tolerated(0.28) benign(0.074) TCGA-QR-A70N-01 17 78058656 78058656 G A CCDC40 Missense_Mutation p.V702M 0.26 tolerated(0.08) benign(0.158) TCGA-QR-A70N-01 1 103400017 103400017 T G COL11A1 Silent p.P1196P 0.19 TCGA-QR-A70N-01 1 103400018 103400018 G T COL11A1 Missense_Mutation p.P1196Q 0.18 unknown(0) TCGA-QR-A70N-01 1 119575971 119575971 T A WARS2 Nonsense_Mutation p.K216* 0.15 TCGA-QR-A70N-01 1 208212983 208212983 T C PLXNA2 Missense_Mutation p.I1495V 0.17 tolerated(0.05) benign(0.318) TCGA-QR-A70N-01 1 70504190 70504190 G A LRRC7 Missense_Mutation p.A857T 0.20 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-QR-A70N-01 2 202619377 202619377 T C ALS2 Missense_Mutation p.R497G 0.18 deleterious(0) probably_damaging(0.954) TCGA-QR-A70N-01 3 10188286 10188286 C G VHL Missense_Mutation p.D143E 0.49 tolerated(0.11) benign(0.222) TCGA-QR-A70N-01 5 140753701 140753701 C A PCDHGA6 Silent p.L17L 0.15 TCGA-QR-A70N-01 5 75998390 75998390 T C IQGAP2 Missense_Mutation p.M1530T 0.14 deleterious(0) possibly_damaging(0.529) TCGA-QR-A70N-01 5 90449066 90449066 T C GPR98 Missense_Mutation p.F6218S 0.22 possibly_damaging(0.665) TCGA-QR-A70N-01 6 10756806 10756806 C T TMEM14B 3'UTR 0.15 TCGA-QR-A70N-01 8 38175553 38175553 G T WHSC1L1 Intron 0.49 TCGA-QR-A70N-01 9 139804402 139804402 T G TRAF2 Missense_Mutation p.L187V 0.46 tolerated(0.37) benign(0.004) TCGA-QR-A70N-01 9 95646900 95646900 A T RP11-526D8.7 Intron 0.05 TCGA-QR-A70O-01 12 56822781 56822781 C A TIMELESS Missense_Mutation p.G397V 0.52 tolerated(0.08) benign(0.13) TCGA-QR-A70O-01 12 69115645 69115645 G A NUP107 Missense_Mutation p.E446K 0.04 deleterious(0.01) probably_damaging(1) TCGA-QR-A70O-01 14 70170160 70170160 C T KIAA0247 Missense_Mutation p.P57L 0.19 deleterious(0) probably_damaging(1) TCGA-QR-A70O-01 19 41447337 41447337 C T AC092071.1 5'Flank 0.30 TCGA-QR-A70O-01 19 42213811 42213811 C T CEA Missense_Mutation p.P93S 0.51 deleterious(0.04) probably_damaging(0.915) TCGA-QR-A70O-01 19 50102938 50102938 G A PRR12 Missense_Mutation p.C1363Y 0.12 possibly_damaging(0.588) TCGA-QR-A70O-01 19 50837572 50837572 C T KCNC3 5'Flank 0.45 TCGA-QR-A70O-01 19 58004913 58004913 C G ZNF419 Missense_Mutation p.L331V 0.52 deleterious(0) possibly_damaging(0.853) TCGA-QR-A70O-01 19 58018415 58018415 C G ZNF773 Missense_Mutation p.L318V 0.10 deleterious(0) possibly_damaging(0.786) TCGA-QR-A70O-01 1 226076584 226076584 G A LEFTY1 Silent p.Y61Y 0.36 TCGA-QR-A70O-01 2 37406671 37406671 G T SULT6B1 Missense_Mutation p.H115Q 0.40 tolerated(0.14) benign(0.105) TCGA-QR-A70O-01 4 187509680 187509680 A G FAT1 3'UTR 0.43 TCGA-QR-A70O-01 5 147856267 147856267 T A HTR4 3'Flank 0.40 TCGA-QR-A70O-01 5 79031172 79031172 A G CMYA5 Missense_Mutation p.K2195R 0.06 benign(0.005) TCGA-QR-A70O-01 7 143807200 143807200 C A OR2A2 Missense_Mutation p.H175Q 0.21 deleterious(0.03) possibly_damaging(0.79) TCGA-QR-A70O-01 7 31736577 31736577 A T PPP1R17 Splice_Site p.X79_splice 0.39 TCGA-QR-A70O-01 9 35736088 35736089 GA - CREB3 Frame_Shift_Del p.E219Dfs*31 0.33 TCGA-QR-A70O-01 X 37026997 37026997 A C FAM47C Missense_Mutation p.T172P 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-QR-A70P-01 10 46111857 46111857 G A ZFAND4 3'UTR 0.31 TCGA-QR-A70P-01 11 46791574 46791574 G A CKAP5 Silent p.P1087P 0.40 TCGA-QR-A70P-01 11 605191 605191 C T PHRF1 Missense_Mutation p.P409S 0.45 deleterious(0) probably_damaging(0.999) TCGA-QR-A70P-01 12 121002881 121002881 C T RNF10 Nonsense_Mutation p.R558* 0.35 TCGA-QR-A70P-01 12 54917726 54917726 G C NCKAP1L Missense_Mutation p.E714D 0.34 deleterious(0.01) probably_damaging(0.99) TCGA-QR-A70P-01 14 61190752 61190752 G T SIX4 Missense_Mutation p.A14E 0.35 tolerated_low_confidence(0.05) benign(0.29) TCGA-QR-A70P-01 14 61190753 61190753 C T SIX4 Missense_Mutation p.A14T 0.33 tolerated_low_confidence(0.24) benign(0.055) TCGA-QR-A70P-01 14 81743629 81743629 G A STON2 Missense_Mutation p.R676W 0.06 deleterious(0) probably_damaging(0.999) TCGA-QR-A70P-01 17 18396088 18396088 G A LGALS9C Missense_Mutation p.R280H 0.12 tolerated(0.09) probably_damaging(0.927) TCGA-QR-A70P-01 17 20354879 20354879 C T LGALS9B Missense_Mutation p.R279H 0.42 tolerated(0.08) possibly_damaging(0.88) TCGA-QR-A70P-01 17 61499249 61499249 G A TANC2 Missense_Mutation p.R1969Q 0.35 deleterious_low_confidence(0.04) possibly_damaging(0.788) TCGA-QR-A70P-01 18 14479160 14479160 G C CXADRP3 RNA 0.06 TCGA-QR-A70P-01 19 33113510 33113510 C G ANKRD27 Missense_Mutation p.V549L 0.05 tolerated(0.28) benign(0.299) TCGA-QR-A70P-01 19 40580901 40580901 T C ZNF780A Missense_Mutation p.N484S 0.48 tolerated(1) benign(0.006) TCGA-QR-A70P-01 19 9075100 9075100 C T MUC16 Missense_Mutation p.A4116T 0.17 unknown(0) TCGA-QR-A70P-01 1 114354414 114354414 G A RSBN1 Silent p.C207C 0.19 TCGA-QR-A70P-01 1 118548121 118548121 C T SPAG17 Silent p.E1564E 0.68 TCGA-QR-A70P-01 1 169336968 169336968 T C NME7 5'UTR 0.35 TCGA-QR-A70P-01 1 212798288 212798288 C T FAM71A Silent p.T23T 0.28 TCGA-QR-A70P-01 1 237054510 237054510 C T MTR Missense_Mutation p.R1029W 0.22 deleterious(0) possibly_damaging(0.889) TCGA-QR-A70P-01 1 32713011 32713011 C A FAM167B 5'UTR 0.14 TCGA-QR-A70P-01 20 21687217 21687217 C A PAX1 Missense_Mutation p.S143Y 0.45 deleterious(0) probably_damaging(1) TCGA-QR-A70P-01 20 43850691 43850691 C A SEMG2 Missense_Mutation p.Q140K 0.38 deleterious(0.01) probably_damaging(0.949) TCGA-QR-A70P-01 21 46077965 46077965 C T KRTAP12-3 Silent p.S23S 0.46 TCGA-QR-A70P-01 2 238283663 238283663 A T COL6A3 Missense_Mutation p.V1024D 0.35 benign(0.009) TCGA-QR-A70P-01 2 241513564 241513564 A G RNPEPL1 Missense_Mutation p.I94V 0.32 tolerated(0.12) benign(0.253) TCGA-QR-A70P-01 2 27876404 27876404 C G SUPT7L Missense_Mutation p.G398A 0.40 tolerated_low_confidence(0.06) benign(0.444) TCGA-QR-A70P-01 2 29225514 29225514 C T FAM179A Silent p.S180S 0.44 TCGA-QR-A70P-01 2 36982171 36982171 G A VIT Missense_Mutation p.R128Q 0.07 tolerated(0.05) possibly_damaging(0.637) TCGA-QR-A70P-01 3 44847335 44847335 A G KIF15 Splice_Site p.X610_splice 0.10 TCGA-QR-A70P-01 8 110100449 110100449 T C TRHR Silent p.N236N 0.38 TCGA-QR-A70P-01 8 30402178 30402180 CAC - RBPMS Intron 0.48 TCGA-QR-A70P-01 9 108128699 108128699 T A SLC44A1 Missense_Mutation p.Y495N 0.53 deleterious(0) probably_damaging(0.994) TCGA-QR-A70P-01 X 65242294 65242294 G A VSIG4 Silent p.A337A 0.33 TCGA-QR-A70Q-01 12 14924036 14924036 T A HIST4H4 5'UTR 0.20 TCGA-QR-A70Q-01 15 90293352 90293352 G C MESP1 3'UTR 0.28 TCGA-QR-A70Q-01 19 45900240 45900240 C G PPP1R13L Missense_Mutation p.G92A 0.32 deleterious_low_confidence(0.03) benign(0.062) TCGA-QR-A70Q-01 1 5951016 5951016 G A NPHP4 Missense_Mutation p.A739V 0.19 tolerated(0.65) benign(0.001) TCGA-QR-A70Q-01 2 128522429 128522429 G A WDR33 Missense_Mutation p.A200V 0.11 deleterious(0.01) unknown(0) TCGA-QR-A70Q-01 2 62099293 62099293 T C CCT4 Missense_Mutation p.N472S 0.32 tolerated(0.1) benign(0.064) TCGA-QR-A70Q-01 3 109050579 109050579 A G DPPA4 Splice_Site p.X130_splice 0.05 TCGA-QR-A70Q-01 3 9831245 9831245 C T TADA3 Missense_Mutation p.R171H 0.07 deleterious(0.01) benign(0.34) TCGA-QR-A70Q-01 6 50011343 50011343 A T DEFB112 Missense_Mutation p.I96N 0.15 deleterious_low_confidence(0) benign(0.308) TCGA-QR-A70Q-01 7 107167714 107167714 A G COG5 Missense_Mutation p.I200T 0.08 deleterious(0) probably_damaging(0.969) TCGA-QR-A70Q-01 9 75420375 75420375 T G TMC1 Missense_Mutation p.C548W 0.04 deleterious(0) probably_damaging(0.957) TCGA-QR-A70R-01 10 81316822 81316822 G T SFTPA2 3'UTR 0.44 TCGA-QR-A70R-01 11 124789688 124789688 C T HEPN1 Silent p.G14G 0.16 TCGA-QR-A70R-01 15 25467500 25467500 G C SNORD115-28 RNA 0.30 TCGA-QR-A70R-01 19 47197153 47197153 C A PRKD2 Missense_Mutation p.A519S 0.22 tolerated(0.89) benign(0.195) TCGA-QR-A70R-01 1 22142457 22142457 G A LDLRAD2 Missense_Mutation p.R178H 0.08 tolerated(0.07) benign(0.204) TCGA-QR-A70R-01 1 85547042 85547042 G A WDR63 Missense_Mutation p.D77N 0.38 deleterious(0) probably_damaging(1) TCGA-QR-A70R-01 22 50316920 50316920 G A CRELD2 Missense_Mutation p.A292T 0.34 tolerated(0.18) benign(0.145) TCGA-QR-A70R-01 3 47041446 47041446 A T NBEAL2 Missense_Mutation p.D1286V 0.22 deleterious(0) benign(0.217) TCGA-QR-A70R-01 4 71062416 71062416 C G ODAM Missense_Mutation p.P20R 0.09 deleterious(0) probably_damaging(0.972) TCGA-QR-A70R-01 7 120607662 120607662 A G ING3 Silent p.L172L 0.25 TCGA-QR-A70R-01 7 141708443 141708443 G T MGAM Nonsense_Mutation p.E89* 0.12 TCGA-QR-A70R-01 7 142180979 142180979 C T TRBV6-5 5'UTR 0.09 TCGA-QR-A70R-01 7 882981 882981 G T SUN1 Missense_Mutation p.G161V 0.07 tolerated(0.11) probably_damaging(0.993) TCGA-QR-A70R-01 8 101932851 101932851 G A YWHAZ 3'UTR 0.08 TCGA-QR-A70T-01 11 62400986 62400986 C G GANAB Missense_Mutation p.R209S 0.31 tolerated(0.65) benign(0.012) TCGA-QR-A70T-01 11 89392730 89392730 G A FOLH1B RNA 0.09 TCGA-QR-A70T-01 12 12301949 12301949 C G LRP6 Missense_Mutation p.G1045R 0.42 deleterious(0) possibly_damaging(0.892) TCGA-QR-A70T-01 12 7172601 7172601 G A C1S Missense_Mutation p.V239I 0.33 tolerated(0.19) benign(0.005) TCGA-QR-A70T-01 12 89917393 89917393 C T GALNT4 Missense_Mutation p.G312R 0.06 deleterious(0) probably_damaging(0.998) TCGA-QR-A70T-01 15 33358928 33358928 T C FMN1 Silent p.P386P 0.45 TCGA-QR-A70T-01 19 9009599 9009599 G A MUC16 Silent p.L13043L 0.07 TCGA-QR-A70T-01 1 114514513 114514513 C T HIPK1 Silent p.T1027T 0.49 TCGA-QR-A70T-01 1 20005098 20005098 C T HTR6 Silent p.D251D 0.23 TCGA-QR-A70T-01 20 61941751 61941751 G A COL20A1 Missense_Mutation p.A428T 0.09 tolerated(0.76) benign(0.007) TCGA-QR-A70T-01 2 37455268 37455268 A G CEBPZ Silent p.D356D 0.28 TCGA-QR-A70T-01 2 86308796 86308796 T A POLR1A Missense_Mutation p.D284V 0.17 tolerated(0.17) benign(0.003) TCGA-QR-A70T-01 8 68084697 68084697 C T CSPP1 Missense_Mutation p.R954W 0.05 deleterious(0) probably_damaging(1) TCGA-QR-A70T-01 9 84205889 84205889 A G TLE1 Silent p.L554L 0.12 TCGA-QR-A70T-01 9 97355969 97355969 G - FBP2 Frame_Shift_Del p.L14* 0.28 TCGA-QR-A70T-01 X 69457054 69457054 G C AWAT1 Missense_Mutation p.W139S 0.16 tolerated(0.15) benign(0.104) TCGA-QR-A70U-01 11 9068919 9068919 A G SCUBE2 Silent p.H662H 0.24 TCGA-QR-A70U-01 13 113854816 113854816 G C PCID2 Missense_Mutation p.I17M 0.07 tolerated(0.1) benign(0.225) TCGA-QR-A70U-01 15 42710140 42710149 AACCATGCCA CT ZNF106 Frame_Shift_Del p.W1817Rfs*21 0.35 TCGA-QR-A70U-01 16 1261283 1261283 T A CACNA1H Missense_Mutation p.L1447M 0.06 deleterious(0) probably_damaging(0.999) TCGA-QR-A70U-01 16 82033014 82033014 T C SDR42E1 Missense_Mutation p.E295G 0.05 deleterious(0.03) possibly_damaging(0.452) TCGA-QR-A70U-01 17 56281693 56281693 G C EPX Missense_Mutation p.R686T 0.06 tolerated(0.14) possibly_damaging(0.785) TCGA-QR-A70U-01 17 7803968 7803968 G A CHD3 Missense_Mutation p.R1025Q 0.07 possibly_damaging(0.553) TCGA-QR-A70U-01 19 10129527 10129527 G A RDH8 Missense_Mutation p.G148D 0.05 tolerated(1) benign(0.003) TCGA-QR-A70U-01 1 155207977 155207977 T G GBA Missense_Mutation p.K237Q 0.32 tolerated(0.06) benign(0.108) TCGA-QR-A70U-01 22 25289433 25289433 C T SGSM1 Silent p.T657T 0.09 TCGA-QR-A70U-01 22 50192316 50192316 C T BRD1 Missense_Mutation p.A559T 0.40 tolerated(0.08) benign(0.003) TCGA-QR-A70U-01 2 43799001 43799001 C T THADA Missense_Mutation p.V637I 0.05 tolerated(0.12) possibly_damaging(0.684) TCGA-QR-A70U-01 3 44692675 44692675 A T ZNF35 Missense_Mutation p.H39L 0.07 tolerated_low_confidence(0.22) benign(0.004) TCGA-QR-A70U-01 3 77614243 77614243 T G ROBO2 Missense_Mutation p.S623R 0.27 deleterious(0) probably_damaging(0.986) TCGA-QR-A70U-01 4 164050124 164050124 T C NAF1 Silent p.P470P 0.42 TCGA-QR-A70U-01 4 185553476 185553476 C T CASP3 Missense_Mutation p.V85I 0.04 tolerated(0.11) benign(0.113) TCGA-QR-A70U-01 7 111484935 111484935 C A DOCK4 Nonsense_Mutation p.E874* 0.09 TCGA-QR-A70U-01 8 38274849 38274849 G T FGFR1 Missense_Mutation p.N577K 0.43 deleterious(0) probably_damaging(1) TCGA-QR-A70U-01 8 66635840 66635840 T C PDE7A Silent p.K393K 0.38 TCGA-QR-A70U-01 X 41012243 41012246 AATC - USP9X Frame_Shift_Del p.Q605Ffs*7 0.32 TCGA-QR-A70U-01 X 41045776 41045776 C T USP9X Nonsense_Mutation p.Q1189* 0.05 TCGA-QR-A70U-01 X 41069761 41069761 G A USP9X Splice_Site p.X1672_splice 0.04 TCGA-QR-A70V-01 11 12020296 12020296 A T DKK3 Missense_Mutation p.F128I 0.45 tolerated(0.18) benign(0.006) TCGA-QR-A70V-01 12 117595766 117595766 C G FBXO21 Missense_Mutation p.E484Q 0.50 tolerated(0.08) possibly_damaging(0.606) TCGA-QR-A70V-01 12 49412616 49412616 C T PRKAG1 5'Flank 0.50 TCGA-QR-A70V-01 12 95528532 95528532 T C FGD6 Missense_Mutation p.Y1022C 0.46 deleterious(0) probably_damaging(0.999) TCGA-QR-A70V-01 13 25399864 25399864 T C RNF17 Silent p.C733C 0.15 TCGA-QR-A70V-01 15 89010473 89010473 G A MRPL46 Missense_Mutation p.R46C 0.44 deleterious(0) probably_damaging(0.967) TCGA-QR-A70V-01 17 29653263 29653263 C - NF1 Frame_Shift_Del p.S1754Lfs*11 0.50 TCGA-QR-A70V-01 17 33269552 33269552 T C CCT6B Missense_Mutation p.D279G 0.85 deleterious(0.01) benign(0.063) TCGA-QR-A70V-01 17 72285858 72285858 C A DNAI2 Nonsense_Mutation p.S198* 0.06 TCGA-QR-A70V-01 1 236646644 236646644 G - EDARADD 3'Flank 0.26 TCGA-QR-A70V-01 2 64199342 64199342 G C VPS54 Missense_Mutation p.P139A 0.20 tolerated(0.18) benign(0.08) TCGA-QR-A70V-01 3 165547533 165547533 G A BCHE Missense_Mutation p.A430V 0.18 tolerated(1) benign(0.02) TCGA-QR-A70V-01 5 140502263 140502263 G A PCDHB4 Missense_Mutation p.R228Q 0.49 tolerated_low_confidence(0.16) benign(0.048) TCGA-QR-A70V-01 5 140530109 140530109 C T PCDHB6 Missense_Mutation p.R91W 0.21 deleterious(0) possibly_damaging(0.798) TCGA-QR-A70V-01 8 143961139 143961139 C A CYP11B1 Missense_Mutation p.V31F 0.57 deleterious(0.01) benign(0.035) TCGA-QR-A70V-01 8 96264494 96264494 C T C8orf37 Missense_Mutation p.R131H 0.06 deleterious(0) probably_damaging(1) TCGA-QR-A70V-01 X 53279664 53279664 G A IQSEC2 Silent p.S698S 0.09 TCGA-QR-A70W-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.33 tolerated(0.07) benign(0.069) TCGA-QR-A70W-01 20 43804501 43804501 G A PI3 Splice_Site p.X27_splice 0.06 TCGA-QR-A70W-01 2 234243689 234243689 C T SAG Silent p.G296G 0.42 TCGA-QR-A70W-01 5 162009 162009 A G PLEKHG4B Missense_Mutation p.R511G 0.22 deleterious(0.04) benign(0) TCGA-QR-A70W-01 6 48036151 48036151 C T PTCHD4 Missense_Mutation p.A81T 0.06 deleterious(0.01) probably_damaging(0.98) TCGA-QR-A70W-01 9 115421618 115421627 CTGGCCACCT - KIAA1958 Frame_Shift_Del p.L474Rfs*13 0.34 TCGA-QR-A70X-01 11 64323500 64323500 C T SLC22A11 Missense_Mutation p.A10V 0.08 tolerated(1) benign(0.012) TCGA-QR-A70X-01 12 53295659 53295659 G A KRT8 Silent p.D202D 0.38 TCGA-QR-A70X-01 16 3350052 3350052 G A TIGD7 Missense_Mutation p.P188L 0.05 deleterious(0) possibly_damaging(0.877) TCGA-QR-A70X-01 18 76886309 76886309 G C ATP9B Missense_Mutation p.E201Q 0.05 deleterious(0) probably_damaging(0.959) TCGA-QR-A70X-01 1 154942999 154942999 C G SHC1 Missense_Mutation p.D2H 0.52 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-QR-A70X-01 1 22160353 22160353 A G HSPG2 Missense_Mutation p.C3596R 0.24 probably_damaging(1) TCGA-QR-A70X-01 21 46271411 46271411 G A PTTG1IP 3'UTR 0.07 TCGA-QR-A70X-01 2 97373550 97373550 A G LMAN2L Silent p.L280L 0.05 TCGA-QR-A70X-01 6 15452234 15452234 C T JARID2 Intron 0.08 TCGA-QR-A70X-01 9 139118701 139118701 G A QSOX2 Silent p.R116R 0.32 TCGA-QR-A7IN-01 12 98928158 98928158 A G TMPO 3'UTR 0.07 TCGA-QR-A7IN-01 14 61486268 61486268 G A SLC38A6 Missense_Mutation p.A125T 0.07 tolerated(0.05) probably_damaging(0.962) TCGA-QR-A7IN-01 15 20496630 20496630 G A CHEK2P2 RNA 0.09 TCGA-QR-A7IN-01 16 27357864 27357864 G A IL4R Silent p.P146P 0.05 TCGA-QR-A7IN-01 16 2815446 2815446 T A SRRM2 Silent p.G1639G 0.48 TCGA-QR-A7IN-01 17 40141571 40141571 T C DNAJC7 Missense_Mutation p.I202V 0.25 tolerated(0.32) benign(0.028) TCGA-QR-A7IN-01 19 15739116 15739116 G A CYP4F8 RNA 0.44 TCGA-QR-A7IN-01 1 27876195 27876195 G A AHDC1 Missense_Mutation p.S811L 0.55 tolerated(0.07) possibly_damaging(0.504) TCGA-QR-A7IN-01 2 46607403 46607403 C T EPAS1 Missense_Mutation p.P531L 0.54 deleterious(0) probably_damaging(1) TCGA-QR-A7IN-01 3 100373746 100373746 C G GPR128 Missense_Mutation p.L483V 0.41 tolerated(0.08) probably_damaging(0.942) TCGA-QR-A7IN-01 4 40356467 40356467 G A CHRNA9 Missense_Mutation p.R457Q 0.24 deleterious(0) probably_damaging(1) TCGA-QR-A7IN-01 5 7766829 7766829 C A ADCY2 Silent p.I708I 0.52 TCGA-QR-A7IN-01 6 30672358 30672358 G T MDC1 Silent p.A1534A 0.16 TCGA-QR-A7IN-01 X 135633063 135633063 G C VGLL1 Intron 0.34 TCGA-QR-A7IP-01 10 123843740 123843740 C A TACC2 Missense_Mutation p.S575R 0.26 benign(0.093) TCGA-QR-A7IP-01 11 18732256 18732256 G A IGSF22 Nonsense_Mutation p.R840* 0.68 TCGA-QR-A7IP-01 12 91502054 91502054 G A LUM Missense_Mutation p.R235C 0.36 deleterious(0) probably_damaging(0.997) TCGA-QR-A7IP-01 14 50092335 50092335 A G DNAAF2 Silent p.S813S 0.04 TCGA-QR-A7IP-01 16 69355038 69355038 C T VPS4A Silent p.H312H 0.19 TCGA-QR-A7IP-01 17 9153924 9153924 C T STX8 Missense_Mutation p.V228M 0.28 deleterious(0.02) possibly_damaging(0.868) TCGA-QR-A7IP-01 19 43585116 43585116 T C PSG2 Missense_Mutation p.D116G 0.39 deleterious(0.01) benign(0.342) TCGA-QR-A7IP-01 1 14106458 14106458 C A PRDM2 Missense_Mutation p.A723E 0.04 probably_damaging(0.972) TCGA-QR-A7IP-01 1 150975138 150975138 C A FAM63A Missense_Mutation p.V34F 0.36 deleterious_low_confidence(0.01) benign(0.144) TCGA-QR-A7IP-01 1 18152586 18152586 C T ACTL8 Missense_Mutation p.R225C 0.22 tolerated(0.13) benign(0.006) TCGA-QR-A7IP-01 21 11039035 11039035 A G BAGE2 RNA 0.04 TCGA-QR-A7IP-01 22 43465690 43465690 C T TTLL1 Missense_Mutation p.G92R 0.18 tolerated(0.08) benign(0.158) TCGA-QR-A7IP-01 3 93646235 93646235 C A PROS1 Missense_Mutation p.Q31H 0.06 tolerated(0.59) benign(0) TCGA-QR-A7IP-01 9 120474689 120474689 G T TLR4 Missense_Mutation p.D95Y 0.08 deleterious(0) possibly_damaging(0.735) TCGA-QT-A5XJ-01 10 121436654 121436654 G A BAG3 Missense_Mutation p.V530M 0.04 tolerated(0.53) unknown(0) TCGA-QT-A5XJ-01 10 12162226 12162226 C G DHTKD1 Missense_Mutation p.S873W 0.43 deleterious(0.01) possibly_damaging(0.713) TCGA-QT-A5XJ-01 10 32581929 32581930 - T EPC1 Frame_Shift_Ins p.M218Nfs*10 0.31 TCGA-QT-A5XJ-01 10 890943 890943 T G LARP4B Missense_Mutation p.K161N 0.50 deleterious(0) probably_damaging(0.996) TCGA-QT-A5XJ-01 11 18764923 18764924 - T PTPN5 Frame_Shift_Ins p.N115Kfs*23 0.27 TCGA-QT-A5XJ-01 11 4608623 4608623 G C OR52I2 Missense_Mutation p.S194T 0.54 tolerated(0.68) benign(0.057) TCGA-QT-A5XJ-01 11 57154992 57154992 G A PRG2 Nonsense_Mutation p.R209* 0.60 TCGA-QT-A5XJ-01 12 100904692 100904692 C T NR1H4 Silent p.F82F 0.41 TCGA-QT-A5XJ-01 12 122277578 122277578 T C HPD 3'UTR 0.48 TCGA-QT-A5XJ-01 12 23818383 23818383 C A SOX5 Missense_Mutation p.G309V 0.45 deleterious(0.04) probably_damaging(0.965) TCGA-QT-A5XJ-01 13 99533880 99533880 C T DOCK9 Missense_Mutation p.V893I 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-QT-A5XJ-01 14 31581747 31581747 T A HECTD1 Missense_Mutation p.E2051D 0.49 tolerated(1) benign(0.351) TCGA-QT-A5XJ-01 14 91338482 91338482 G T RPS6KA5 Missense_Mutation p.P782H 0.66 deleterious_low_confidence(0) possibly_damaging(0.452) TCGA-QT-A5XJ-01 17 39740506 39740506 C T KRT14 Intron 0.44 TCGA-QT-A5XJ-01 17 680227 680227 G T GLOD4 Missense_Mutation p.P48T 0.47 deleterious(0) probably_damaging(0.978) TCGA-QT-A5XJ-01 17 72868221 72868221 G A FDXR Silent p.P39P 0.28 TCGA-QT-A5XJ-01 17 7417036 7417036 A G POLR2A Missense_Mutation p.Y1818C 0.44 unknown(0) TCGA-QT-A5XJ-01 19 11492639 11492639 G A EPOR Nonsense_Mutation p.R132* 0.27 TCGA-QT-A5XJ-01 19 14574926 14574926 G A PKN1 Silent p.Q570Q 0.46 TCGA-QT-A5XJ-01 19 22364263 22364263 T C ZNF676 Missense_Mutation p.T86A 0.43 tolerated(0.11) benign(0.264) TCGA-QT-A5XJ-01 19 37100799 37100799 T G ZNF382 Intron 0.46 TCGA-QT-A5XJ-01 1 152883994 152883994 A G IVL Missense_Mutation p.Q574R 0.33 tolerated_low_confidence(0.54) unknown(0) TCGA-QT-A5XJ-01 1 19481549 19481549 C G UBR4 Silent p.A2107A 0.36 TCGA-QT-A5XJ-01 1 84647929 84647929 C G PRKACB Missense_Mutation p.T99R 0.81 deleterious(0.02) probably_damaging(0.988) TCGA-QT-A5XJ-01 20 43933259 43933259 G A MATN4 Silent p.S84S 0.47 TCGA-QT-A5XJ-01 21 31971176 31971176 G A KRTAP6-2 Silent p.Y6Y 0.41 TCGA-QT-A5XJ-01 2 190626374 190626374 C G OSGEPL1 5'UTR 0.58 TCGA-QT-A5XJ-01 2 203155921 203155921 A C NOP58 Silent p.A236A 0.45 TCGA-QT-A5XJ-01 2 85824658 85824658 G A RNF181 3'UTR 0.50 TCGA-QT-A5XJ-01 3 101311673 101311673 A G PCNP 3'UTR 0.79 TCGA-QT-A5XJ-01 6 137814559 137814559 G A OLIG3 Missense_Mutation p.P250L 0.57 deleterious(0.05) probably_damaging(0.995) TCGA-QT-A5XJ-01 7 100238453 100238453 G A TFR2 Missense_Mutation p.A110V 0.40 tolerated(0.11) benign(0.003) TCGA-QT-A5XJ-01 9 34622507 34622507 G T ARID3C Missense_Mutation p.N295K 0.42 tolerated(0.4) benign(0.001) TCGA-QT-A5XJ-01 9 8331580 8331580 A T PTPRD Splice_Site p.X1845_splice 0.32 TCGA-QT-A5XK-01 10 43617416 43617416 T C RET Missense_Mutation p.M918T 0.28 deleterious(0) probably_damaging(1) TCGA-QT-A5XK-01 11 31477878 31477878 T G IMMP1L Silent p.R84R 0.12 TCGA-QT-A5XK-01 13 49765404 49765404 A G FNDC3A Missense_Mutation p.I704V 0.12 tolerated(0.44) benign(0) TCGA-QT-A5XK-01 15 34115225 34115225 A G RYR3 Missense_Mutation p.K3675R 0.05 benign(0.002) TCGA-QT-A5XK-01 19 47933701 47933701 G A SLC8A2 Missense_Mutation p.A804V 0.15 deleterious(0) probably_damaging(1) TCGA-QT-A5XK-01 20 5559094 5559094 G T GPCPD1 Missense_Mutation p.R213S 0.05 tolerated(0.23) possibly_damaging(0.574) TCGA-QT-A5XK-01 20 60715937 60715937 G A PSMA7 Nonsense_Mutation p.Q54* 0.39 TCGA-QT-A5XK-01 3 186395480 186395480 T C HRG Silent p.P462P 0.58 TCGA-QT-A5XK-01 4 1343499 1343499 G A UVSSA Missense_Mutation p.A96T 0.06 deleterious(0) benign(0.069) TCGA-QT-A5XK-01 4 72629626 72629626 G A GC Silent p.Y186Y 0.10 TCGA-QT-A5XK-01 5 140517245 140517245 C T PCDHB5 Silent p.T743T 0.10 TCGA-QT-A5XK-01 9 129870241 129870241 G C ANGPTL2 Missense_Mutation p.T257S 0.34 tolerated(0.26) benign(0.115) TCGA-QT-A5XL-01 13 37269242 37269242 A T SERTM1 Silent p.G9G 0.33 TCGA-QT-A5XL-01 1 150390085 150390085 C A RPRD2 Missense_Mutation p.H73Q 0.22 deleterious_low_confidence(0.05) benign(0.355) TCGA-QT-A5XL-01 2 46607402 46607402 C T EPAS1 Missense_Mutation p.P531S 0.56 deleterious(0) probably_damaging(1) TCGA-QT-A5XL-01 3 47043265 47043265 G A NBEAL2 Silent p.A1577A 0.12 TCGA-QT-A5XL-01 6 32122174 32122174 G C PPT2 Intron 0.33 TCGA-QT-A5XL-01 8 93003905 93003905 G A RUNX1T1 Missense_Mutation p.P329L 0.28 tolerated(1) benign(0.005) TCGA-QT-A5XL-01 X 125685938 125685938 C T DCAF12L1 Silent p.A218A 0.07 TCGA-QT-A5XL-01 X 79698960 79698960 G A FAM46D Missense_Mutation p.E308K 0.05 tolerated(0.05) benign(0.07) TCGA-QT-A5XM-01 10 43617416 43617416 T C RET Missense_Mutation p.M918T 0.25 deleterious(0) probably_damaging(1) TCGA-QT-A5XM-01 12 51636117 51636117 C T DAZAP2 Missense_Mutation p.S102F 0.27 deleterious_low_confidence(0) possibly_damaging(0.731) TCGA-QT-A5XM-01 19 12842217 12842217 C T C19orf43 Missense_Mutation p.G122R 0.07 deleterious(0) probably_damaging(0.998) TCGA-QT-A5XM-01 1 78546456 78546456 G A GIPC2 Missense_Mutation p.G113E 0.07 deleterious(0) probably_damaging(1) TCGA-QT-A5XM-01 22 38273774 38273774 C T EIF3L Missense_Mutation p.R391W 0.43 deleterious(0) probably_damaging(0.999) TCGA-QT-A5XM-01 22 38878555 38878555 C A KDELR3 3'Flank 0.06 TCGA-QT-A5XM-01 2 152419185 152419185 C T NEB Silent p.T6277T 0.29 TCGA-QT-A5XM-01 4 122590847 122590847 T G ANXA5 Missense_Mutation p.R271S 0.30 deleterious(0) probably_damaging(0.989) TCGA-QT-A5XM-01 6 30893361 30893361 C T VARS2 Silent p.F972F 0.30 TCGA-QT-A5XM-01 X 103267771 103267771 G A H2BFWT Silent p.A154A 0.26 TCGA-QT-A5XN-01 16 3727663 3727663 T C TRAP1 Intron 0.39 TCGA-QT-A5XN-01 17 72937759 72937759 C T OTOP3 Silent p.A115A 0.39 TCGA-QT-A5XN-01 17 74075788 74075788 C G ZACN Missense_Mutation p.I76M 0.08 deleterious(0.02) probably_damaging(1) TCGA-QT-A5XN-01 19 56369263 56369263 G A NLRP4 Silent p.L168L 0.32 TCGA-QT-A5XN-01 1 205884502 205884502 T G SLC26A9 Missense_Mutation p.T787P 0.26 deleterious_low_confidence(0) possibly_damaging(0.556) TCGA-QT-A5XN-01 1 228547476 228547476 G A OBSCN Intron 0.64 TCGA-QT-A5XN-01 1 64676515 64676515 C T UBE2U Missense_Mutation p.A111V 0.17 deleterious(0.03) possibly_damaging(0.638) TCGA-QT-A5XN-01 2 112686863 112686863 A T MERTK Silent p.G76G 0.52 TCGA-QT-A5XN-01 2 61486850 61486850 A G USP34 Missense_Mutation p.L1947S 0.47 deleterious(0) probably_damaging(0.969) TCGA-QT-A5XN-01 3 38639331 38639331 C T SCN5A Silent p.P717P 0.73 TCGA-QT-A5XN-01 4 13601677 13601677 G C BOD1L1 Missense_Mutation p.P2283A 0.50 benign(0.006) TCGA-QT-A5XN-01 5 138651823 138651823 C T MATR3 Missense_Mutation p.P359S 0.25 tolerated(0.22) probably_damaging(0.986) TCGA-QT-A5XN-01 6 42987098 42987098 A G KLHDC3 Missense_Mutation p.D359G 0.46 tolerated(0.07) benign(0.103) TCGA-QT-A5XN-01 7 150066802 150066802 T A REPIN1 Translation_Start_Site p.M1? 0.58 deleterious_low_confidence(0) possibly_damaging(0.769) TCGA-QT-A5XN-01 8 2046698 2046698 G A MYOM2 Silent p.L775L 0.42 TCGA-QT-A5XN-01 8 90982714 90982714 T - NBN Frame_Shift_Del p.E259Nfs*17 0.22 TCGA-QT-A5XN-01 X 103495314 103495314 G T ESX1 Silent p.P272P 0.47 TCGA-QT-A5XO-01 11 100912716 100912716 C T PGR Missense_Mutation p.R869H 0.39 deleterious(0) probably_damaging(1) TCGA-QT-A5XO-01 11 107832959 107832959 C T RAB39A Missense_Mutation p.T172M 0.13 deleterious(0) probably_damaging(0.981) TCGA-QT-A5XO-01 12 54966508 54966508 C T PDE1B Missense_Mutation p.L240F 0.04 tolerated(0.18) possibly_damaging(0.659) TCGA-QT-A5XO-01 13 23906391 23906391 C A SACS Missense_Mutation p.R3875L 0.15 probably_damaging(0.991) TCGA-QT-A5XO-01 14 102552237 102552237 A T HSP90AA1 Silent p.S251S 0.43 TCGA-QT-A5XO-01 14 78174291 78174291 C T ALKBH1 Silent p.G19G 0.12 TCGA-QT-A5XO-01 17 18150576 18150576 C G FLII Silent p.G861G 0.29 TCGA-QT-A5XO-01 17 54452061 54452061 T C ANKFN1 Missense_Mutation p.V302A 0.28 deleterious(0.05) benign(0.306) TCGA-QT-A5XO-01 19 41387998 41387998 G A CYP2A7 Silent p.L40L 0.06 TCGA-QT-A5XO-01 19 44982338 44982338 T - ZNF180 Frame_Shift_Del p.D121Ifs*17 0.10 TCGA-QT-A5XO-01 19 9087339 9087339 C T MUC16 Missense_Mutation p.M1492I 0.42 unknown(0) TCGA-QT-A5XO-01 1 158369200 158369200 G A OR10T2 Silent p.S19S 0.50 TCGA-QT-A5XO-01 1 16261761 16261761 C G SPEN Missense_Mutation p.A3009G 0.21 benign(0.003) TCGA-QT-A5XO-01 1 171076862 171076862 G C FMO3 Missense_Mutation p.G123A 0.24 deleterious(0) probably_damaging(0.96) TCGA-QT-A5XO-01 1 174977818 174977818 T C CACYBP Missense_Mutation p.V169A 0.23 deleterious(0.04) benign(0.191) TCGA-QT-A5XO-01 1 215792612 215792612 A G KCTD3 Missense_Mutation p.H622R 0.15 tolerated_low_confidence(1) benign(0) TCGA-QT-A5XO-01 1 231556829 231556829 A G EGLN1 Missense_Mutation p.I269T 0.16 deleterious(0) probably_damaging(1) TCGA-QT-A5XO-01 1 241886684 241886684 C T WDR64 Silent p.A370A 0.14 TCGA-QT-A5XO-01 1 62190656 62190656 A C TM2D1 Missense_Mutation p.L108R 0.08 tolerated(0.1) possibly_damaging(0.648) TCGA-QT-A5XO-01 1 91866581 91866581 T C HFM1 Missense_Mutation p.D20G 0.29 tolerated_low_confidence(0.05) benign(0.014) TCGA-QT-A5XO-01 20 23420952 23420970 GGTCCTGTCAGCCAAGCTG - CSTL1 Frame_Shift_Del p.L18Tfs*13 0.15 TCGA-QT-A5XO-01 20 6021647 6021647 C T LRRN4 3'UTR 0.12 TCGA-QT-A5XO-01 2 149227977 149227977 C G MBD5 Missense_Mutation p.P822R 0.33 tolerated(0.1) possibly_damaging(0.904) TCGA-QT-A5XO-01 2 235950986 235950986 G A SH3BP4 Missense_Mutation p.G525R 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-QT-A5XO-01 2 9728380 9728380 T C YWHAQ Missense_Mutation p.I166V 0.07 deleterious_low_confidence(0.02) benign(0.006) TCGA-QT-A5XO-01 2 97856721 97856721 C A ANKRD36 Missense_Mutation p.S751Y 0.22 tolerated_low_confidence(0.06) possibly_damaging(0.888) TCGA-QT-A5XO-01 8 39613293 39613293 C A ADAM2 Missense_Mutation p.S584I 0.12 tolerated(0.19) benign(0.024) TCGA-QT-A5XO-01 X 12735860 12735860 C G FRMPD4 Missense_Mutation p.A972G 0.06 tolerated_low_confidence(0.05) benign(0.002) TCGA-QT-A5XP-01 10 88988042 88988042 C T NUTM2A Silent p.G135G 0.24 TCGA-QT-A5XP-01 11 108173735 108173735 A G ATM Silent p.Q1825Q 0.09 TCGA-QT-A5XP-01 12 6976729 6976729 C T TPI1 Missense_Mutation p.A37V 0.31 tolerated_low_confidence(0.07) benign(0.001) TCGA-QT-A5XP-01 13 25268673 25268673 G A ATP12A Missense_Mutation p.R496H 0.05 tolerated(0.14) benign(0.005) TCGA-QT-A5XP-01 13 49076986 49076986 C T RCBTB2 Missense_Mutation p.V331M 0.08 deleterious(0) possibly_damaging(0.79) TCGA-QT-A5XP-01 14 20345163 20345163 T C OR4K2 Missense_Mutation p.V246A 0.04 deleterious(0) probably_damaging(0.981) TCGA-QT-A5XP-01 15 65956953 65956953 G A DENND4A Missense_Mutation p.P1822S 0.30 deleterious(0) probably_damaging(0.993) TCGA-QT-A5XP-01 16 72828227 72828227 A C ZFHX3 Missense_Mutation p.L2785R 0.23 unknown(0) TCGA-QT-A5XP-01 17 50212251 50212251 C T CA10 Intron 0.07 TCGA-QT-A5XP-01 19 52447915 52447915 A G ZNF613 Missense_Mutation p.Y260C 0.06 deleterious(0.03) probably_damaging(0.99) TCGA-QT-A5XP-01 1 21991732 21991732 T C RAP1GAP 5'UTR 0.20 TCGA-QT-A5XP-01 20 54824371 54824371 G A MC3R Missense_Mutation p.V158M 0.05 tolerated(0.45) probably_damaging(0.967) TCGA-QT-A5XP-01 22 24034583 24034583 C A RGL4 Missense_Mutation p.P81T 0.05 tolerated(0.05) benign(0.227) TCGA-QT-A5XP-01 3 138195282 138195282 T C ESYT3 Intron 0.20 TCGA-QT-A5XP-01 3 49848257 49848257 G A UBA7 Silent p.S413S 0.06 TCGA-QT-A5XP-01 4 148787930 148787930 A G ARHGAP10 Missense_Mutation p.N222S 0.10 tolerated(0.66) benign(0.039) TCGA-QT-A5XP-01 5 14287075 14287075 C G TRIO Missense_Mutation p.S148C 0.29 probably_damaging(0.997) TCGA-QT-A5XP-01 6 151161960 151161960 T A PLEKHG1 Silent p.S1362S 0.32 TCGA-QT-A5XP-01 8 98943421 98943421 G A MATN2 Missense_Mutation p.R128Q 0.12 tolerated(0.52) possibly_damaging(0.584) TCGA-QT-A5XP-01 9 133927982 133927982 G - LAMC3 Frame_Shift_Del p.T580Qfs*7 0.16 TCGA-QT-A5XP-01 X 119672576 119672576 C A CUL4B Silent p.L615L 0.12 TCGA-QT-A5XP-01 X 48776050 48776050 C T PIM2 Splice_Site p.X21_splice 0.17 TCGA-QT-A69Q-01 10 128153427 128153427 C T C10orf90 Missense_Mutation p.D458N 0.05 tolerated(1) benign(0.03) TCGA-QT-A69Q-01 11 62287729 62287729 C T AHNAK Silent p.K4720K 0.13 TCGA-QT-A69Q-01 12 118582631 118582631 C G PEBP1 3'UTR 0.11 TCGA-QT-A69Q-01 14 52505584 52505584 G A NID2 Missense_Mutation p.P713L 0.12 deleterious(0.04) possibly_damaging(0.589) TCGA-QT-A69Q-01 16 30983037 30983037 G T SETD1A Missense_Mutation p.A1119S 0.14 unknown(0) TCGA-QT-A69Q-01 19 41186839 41186839 G A NUMBL Silent p.L175L 0.08 TCGA-QT-A69Q-01 1 227387293 227387293 T C CDC42BPA Missense_Mutation p.T139A 0.28 tolerated(0.14) benign(0.051) TCGA-QT-A69Q-01 4 71859586 71859586 T G DCK Missense_Mutation p.F12V 0.27 tolerated(0.41) benign(0) TCGA-QT-A69Q-01 6 155569142 155569142 G C TIAM2 Missense_Mutation p.D1221H 0.11 deleterious(0.01) possibly_damaging(0.773) TCGA-QT-A69Q-01 6 598916 598916 T C EXOC2 Missense_Mutation p.D305G 0.17 deleterious(0) probably_damaging(0.956) TCGA-QT-A69Q-01 6 6318876 6318876 C T F13A1 Missense_Mutation p.A8T 0.12 tolerated_low_confidence(1) benign(0) TCGA-QT-A69Q-01 7 44040856 44040858 CAC - SPDYE1 In_Frame_Del p.H79del 0.14 TCGA-QT-A69Q-01 9 119739005 119739005 G A ASTN2 Missense_Mutation p.R500C 0.09 deleterious(0) unknown(0) TCGA-QT-A7U0-01 10 122662677 122662677 C G WDR11 Missense_Mutation p.P955R 0.24 tolerated(0.63) benign(0.021) TCGA-QT-A7U0-01 15 31251152 31251152 G C MTMR10 Silent p.L283L 0.34 TCGA-QT-A7U0-01 19 36579971 36579971 G T WDR62 Silent p.G600G 0.35 TCGA-QT-A7U0-01 19 56466123 56466123 C T NLRP8 Silent p.Y233Y 0.17 TCGA-QT-A7U0-01 2 46607403 46607403 C T EPAS1 Missense_Mutation p.P531L 0.36 deleterious(0) probably_damaging(1) TCGA-QT-A7U0-01 5 35035400 35035400 C T AGXT2 Missense_Mutation p.G170S 0.34 deleterious(0) probably_damaging(0.999) TCGA-QT-A7U0-01 8 103573187 103573187 C A ODF1 3'UTR 0.19 TCGA-RM-A68T-01 10 103904019 103904019 G A PPRC1 Missense_Mutation p.C1188Y 0.35 tolerated(0.09) probably_damaging(0.971) TCGA-RM-A68T-01 11 16823313 16823313 G A PLEKHA7 Nonsense_Mutation p.R737* 0.32 TCGA-RM-A68T-01 12 22025622 22025622 G A ABCC9 Missense_Mutation p.S712F 0.26 deleterious(0) probably_damaging(0.996) TCGA-RM-A68T-01 14 105634399 105634399 G A JAG2 Missense_Mutation p.R38W 0.35 deleterious(0) probably_damaging(0.995) TCGA-RM-A68T-01 15 40758272 40758272 C - BAHD1 Frame_Shift_Del p.L763Ffs*36 0.17 TCGA-RM-A68T-01 17 3632769 3632769 C A ITGAE Intron 0.24 TCGA-RM-A68T-01 20 32336747 32336747 G A ZNF341 Missense_Mutation p.V120M 0.29 deleterious(0) possibly_damaging(0.823) TCGA-RM-A68T-01 2 162061273 162061273 T C TANK Missense_Mutation p.I99T 0.32 tolerated(0.54) benign(0.024) TCGA-RM-A68T-01 2 54124014 54124014 G T PSME4 Silent p.I1205I 0.32 TCGA-RM-A68T-01 3 78719367 78719367 C T ROBO1 Missense_Mutation p.C476Y 0.36 deleterious(0) probably_damaging(1) TCGA-RM-A68T-01 5 55407048 55407048 C A ANKRD55 Silent p.V509V 0.29 TCGA-RM-A68T-01 7 99912168 99912168 T G SPDYE3 Missense_Mutation p.D332E 0.58 tolerated(0.38) possibly_damaging(0.901) TCGA-RM-A68T-01 9 140139813 140139813 C A FAM166A Silent p.G156G 0.28 TCGA-RM-A68W-01 10 88717310 88717310 G A MMRN2 5'UTR 0.16 TCGA-RM-A68W-01 11 82645030 82645030 G A C11orf82 Missense_Mutation p.G884S 0.08 tolerated(0.23) benign(0.035) TCGA-RM-A68W-01 17 47780342 47780342 C G SLC35B1 Missense_Mutation p.G265A 0.36 deleterious(0.01) probably_damaging(0.971) TCGA-RM-A68W-01 22 50962137 50962137 C T SCO2 Missense_Mutation p.G235D 0.04 deleterious(0) probably_damaging(1) TCGA-RM-A68W-01 2 207172767 207172767 T A ZDBF2 Missense_Mutation p.V1172D 0.08 deleterious(0) possibly_damaging(0.485) TCGA-RM-A68W-01 X 112021835 112021835 C A AMOT Missense_Mutation p.G1072V 0.20 probably_damaging(0.986) TCGA-RM-A68W-01 X 130408639 130408639 G A IGSF1 Missense_Mutation p.R1234C 0.29 deleterious(0.05) probably_damaging(0.969) TCGA-RM-A68W-01 X 134156379 134156379 G T FAM127C Silent p.T37T 0.05 TCGA-RM-A68W-01 X 138733892 138733892 G A MCF2 Silent p.I4I 0.40 TCGA-RT-A6Y9-01 1 160141222 160141222 G A ATP1A4 Missense_Mutation p.R558H 0.35 deleterious(0.03) possibly_damaging(0.799) TCGA-RT-A6Y9-01 2 113405018 113405018 A G SLC20A1 Missense_Mutation p.K151R 0.41 tolerated(0.31) benign(0.008) TCGA-RT-A6Y9-01 2 242187753 242187753 C G HDLBP Missense_Mutation p.R508P 0.35 deleterious(0.01) possibly_damaging(0.905) TCGA-RT-A6Y9-01 7 32582854 32582854 C T AVL9 Silent p.G65G 0.06 TCGA-RT-A6Y9-01 9 134357838 134357838 G A PRRC2B Silent p.Q1688Q 0.09 TCGA-RT-A6Y9-01 X 123171406 123171407 - A STAG2 Frame_Shift_Ins p.H108Afs*2 0.31 TCGA-RT-A6YA-01 11 75509417 75509417 C T DGAT2 Missense_Mutation p.L319F 0.17 tolerated(0.09) benign(0.031) TCGA-RT-A6YA-01 12 111894043 111894043 G A ATXN2 Silent p.A1178A 0.08 TCGA-RT-A6YA-01 12 2970493 2970493 A G FOXM1 Missense_Mutation p.L451S 0.20 tolerated(0.65) benign(0.05) TCGA-RT-A6YA-01 12 46246107 46246107 A C ARID2 Missense_Mutation p.I1401L 0.12 tolerated_low_confidence(0.48) benign(0) TCGA-RT-A6YA-01 12 95604019 95604019 G C FGD6 Missense_Mutation p.S347R 0.42 tolerated_low_confidence(0.15) benign(0.009) TCGA-RT-A6YA-01 14 104473169 104473169 T C TDRD9 Missense_Mutation p.V665A 0.27 deleterious(0) possibly_damaging(0.528) TCGA-RT-A6YA-01 14 24633826 24633826 A G IRF9 Missense_Mutation p.Y218C 0.13 deleterious(0.02) probably_damaging(0.989) TCGA-RT-A6YA-01 15 52488561 52488561 G A MYO5C Missense_Mutation p.T1647I 0.14 deleterious(0) probably_damaging(1) TCGA-RT-A6YA-01 16 5057420 5057420 C T SEC14L5 Missense_Mutation p.T502M 0.46 tolerated(0.09) benign(0.048) TCGA-RT-A6YA-01 16 67680391 67680391 C T RLTPR Missense_Mutation p.S146L 0.06 tolerated(0.13) benign(0.001) TCGA-RT-A6YA-01 17 29556992 29556992 G C NF1 Missense_Mutation p.R997T 0.76 deleterious(0) probably_damaging(0.942) TCGA-RT-A6YA-01 17 37420555 37420555 A G FBXL20 Missense_Mutation p.I359T 0.16 deleterious(0) benign(0.019) TCGA-RT-A6YA-01 19 36333388 36333388 C T NPHS1 Missense_Mutation p.R800H 0.05 tolerated(0.55) benign(0.021) TCGA-RT-A6YA-01 19 38976754 38976754 G A RYR1 Missense_Mutation p.R1820H 0.11 possibly_damaging(0.633) TCGA-RT-A6YA-01 1 161039405 161039405 G A ARHGAP30 Missense_Mutation p.R4W 0.08 deleterious(0) possibly_damaging(0.7) TCGA-RT-A6YA-01 1 17395638 17395638 G A PADI2 Silent p.D633D 0.23 TCGA-RT-A6YA-01 1 183914685 183914685 T G COLGALT2 Missense_Mutation p.S384R 0.41 deleterious(0.02) possibly_damaging(0.776) TCGA-RT-A6YA-01 20 22563313 22563313 G C FOXA2 Missense_Mutation p.S189R 0.50 deleterious(0) probably_damaging(0.983) TCGA-RT-A6YA-01 2 136564823 136564823 C T LCT Missense_Mutation p.A1350T 0.10 tolerated(0.51) benign(0.013) TCGA-RT-A6YA-01 2 85876046 85876046 G T USP39 3'UTR 0.15 TCGA-RT-A6YA-01 3 124854521 124854521 G A SLC12A8 Missense_Mutation p.A243V 0.24 deleterious(0.01) benign(0.258) TCGA-RT-A6YA-01 7 32910344 32910344 G A KBTBD2 Missense_Mutation p.A162V 0.10 tolerated(0.68) benign(0.003) TCGA-RT-A6YA-01 X 140994473 140994473 C T MAGEC1 Missense_Mutation p.P428L 0.04 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-RT-A6YA-01 X 30877655 30877655 T C TAB3 Silent p.R17R 0.14 TCGA-RT-A6YC-01 12 104517193 104517193 T C NFYB Silent p.K80K 0.09 TCGA-RT-A6YC-01 17 74005061 74005061 C T EVPL Missense_Mutation p.V1409M 0.33 deleterious(0.02) benign(0.372) TCGA-RT-A6YC-01 3 45748365 45748365 A G SACM1L Missense_Mutation p.Y100C 0.38 deleterious(0) probably_damaging(0.99) TCGA-RT-A6YC-01 6 18572094 18572094 T A MIR548A1 RNA 0.27 TCGA-RT-A6YC-01 6 25726526 25726527 - T HIST1H2AA Frame_Shift_Ins p.T77Nfs*15 0.30 TCGA-RW-A67V-01 10 64565028 64565028 C T ADO Missense_Mutation p.P70L 0.12 deleterious(0.02) possibly_damaging(0.512) TCGA-RW-A67V-01 12 105385571 105385571 C G C12orf45 Missense_Mutation p.P95R 0.11 deleterious(0) probably_damaging(0.946) TCGA-RW-A67V-01 12 125450247 125450247 C T DHX37 Missense_Mutation p.D568N 0.43 deleterious(0.05) possibly_damaging(0.895) TCGA-RW-A67V-01 13 26621012 26621012 G A SHISA2 Missense_Mutation p.S176L 0.47 deleterious(0) probably_damaging(0.999) TCGA-RW-A67V-01 14 102675248 102675248 C G WDR20 Missense_Mutation p.F278L 0.49 deleterious(0.02) benign(0.196) TCGA-RW-A67V-01 16 27752044 27752044 G A KIAA0556 Missense_Mutation p.R809Q 0.43 tolerated(0.18) benign(0.045) TCGA-RW-A67V-01 19 18888210 18888210 C G CRTC1 3'UTR 0.10 TCGA-RW-A67V-01 19 8464766 8464766 A G RAB11B Silent p.S20S 0.12 TCGA-RW-A67V-01 1 17548858 17548858 C T PADI1 Missense_Mutation p.R56C 0.15 deleterious(0.03) possibly_damaging(0.576) TCGA-RW-A67V-01 1 43905438 43905438 C G SZT2 Nonsense_Mutation p.S2290* 0.79 TCGA-RW-A67V-01 2 179430601 179430601 T C TTN Missense_Mutation p.Y26753C 0.09 TCGA-RW-A67V-01 2 20463176 20463176 C T PUM2 Missense_Mutation p.G668E 0.40 deleterious(0.01) probably_damaging(1) TCGA-RW-A67V-01 2 29072796 29072796 A C SPDYA Missense_Mutation p.S311R 0.36 deleterious_low_confidence(0.01) benign(0.209) TCGA-RW-A67V-01 6 109786995 109786995 A G ZBTB24 3'UTR 0.33 TCGA-RW-A67V-01 X 129265714 129265714 G A AIFM1 Silent p.P503P 0.06 TCGA-RW-A67W-01 11 133790306 133790306 C T IGSF9B Missense_Mutation p.G1105D 0.08 deleterious_low_confidence(0) benign(0.365) TCGA-RW-A67W-01 16 58077523 58077523 A G MMP15 Missense_Mutation p.N521S 0.40 tolerated(0.47) benign(0.002) TCGA-RW-A67W-01 16 74725330 74725330 C T MLKL Silent p.P189P 0.03 TCGA-RW-A67W-01 19 38958370 38958370 G A RYR1 Missense_Mutation p.R1100H 0.13 probably_damaging(1) TCGA-RW-A67W-01 1 206566110 206566110 C T SRGAP2 Missense_Mutation p.A98V 0.09 deleterious(0.04) possibly_damaging(0.83) TCGA-RW-A67W-01 1 235969125 235969125 C T LYST Missense_Mutation p.R1104Q 0.38 deleterious(0) probably_damaging(0.986) TCGA-RW-A67W-01 1 29365807 29365807 C A EPB41 Missense_Mutation p.A502E 0.18 deleterious(0) probably_damaging(1) TCGA-RW-A67W-01 21 10906837 10906837 A G TPTE 3'UTR 0.28 TCGA-RW-A67W-01 21 39817410 39817410 G A ERG Silent p.V58V 0.12 TCGA-RW-A67W-01 3 121720708 121720708 G A ILDR1 Missense_Mutation p.A128V 0.31 deleterious(0) probably_damaging(0.985) TCGA-RW-A67W-01 8 67484760 67484760 G A MYBL1 Missense_Mutation p.A562V 0.16 deleterious(0) probably_damaging(1) TCGA-RW-A67X-01 12 57554807 57554807 T C LRP1 Missense_Mutation p.L704P 0.07 probably_damaging(0.993) TCGA-RW-A67X-01 13 33635727 33635727 G A KL Silent p.T837T 0.24 TCGA-RW-A67X-01 16 76569593 76569593 C T CNTNAP4 Silent p.C896C 0.07 TCGA-RW-A67X-01 17 35298029 35298029 C A LHX1 Missense_Mutation p.Q174K 0.29 tolerated(0.34) benign(0.277) TCGA-RW-A67X-01 17 6704168 6704168 C T TEKT1 Missense_Mutation p.R316H 0.05 deleterious(0) probably_damaging(0.999) TCGA-RW-A67X-01 17 79857351 79857351 C A ANAPC11 Missense_Mutation p.L115I 0.06 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-RW-A67X-01 1 152659492 152659492 C A LCE2B Missense_Mutation p.P58H 0.04 deleterious_low_confidence(0.04) unknown(0) TCGA-RW-A67X-01 1 156131148 156131148 C T SEMA4A Silent p.G274G 0.08 TCGA-RW-A67X-01 22 24087097 24087097 T C ZNF70 Silent p.Q77Q 0.24 TCGA-RW-A67X-01 3 10188230 10188231 - ACG VHL In_Frame_Ins p.D126dup 0.28 TCGA-RW-A67X-01 3 102196341 102196341 C A ZPLD1 Nonsense_Mutation p.S392* 0.03 TCGA-RW-A67X-01 3 42687435 42687435 C T NKTR Missense_Mutation p.R1453W 0.11 deleterious_low_confidence(0) unknown(0) TCGA-RW-A67X-01 4 73280586 73280586 T A ADAMTS3 Nonsense_Mutation p.R203* 0.14 TCGA-RW-A67X-01 5 169661132 169661132 G C C5orf58 5'UTR 0.09 TCGA-RW-A67X-01 5 482200 482200 C T SLC9A3 Missense_Mutation p.E477K 0.19 deleterious(0) possibly_damaging(0.887) TCGA-RW-A67Y-01 11 94113423 94113423 C T GPR83 Silent p.K388K 0.22 TCGA-RW-A67Y-01 12 14599931 14599931 G C ATF7IP Missense_Mutation p.A647P 0.11 deleterious_low_confidence(0) possibly_damaging(0.82) TCGA-RW-A67Y-01 12 47160358 47160358 G A SLC38A4 3'UTR 0.50 TCGA-RW-A67Y-01 13 42780271 42780271 A G DGKH Missense_Mutation p.K864E 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-RW-A67Y-01 17 29528441 29528441 C T NF1 Nonsense_Mutation p.Q400* 0.76 TCGA-RW-A67Y-01 17 61972362 61972362 A C CSH1 3'UTR 0.88 TCGA-RW-A67Y-01 19 46191718 46191721 TGAC - SNRPD2 Frame_Shift_Del p.V36Rfs*20 0.44 TCGA-RW-A67Y-01 1 152187678 152187678 A G HRNR Missense_Mutation p.S2143P 0.04 unknown(0) TCGA-RW-A67Y-01 1 26688343 26688343 G T ZNF683 Silent p.T438T 0.43 TCGA-RW-A67Y-01 2 39499635 39499635 G A MAP4K3 Silent p.L615L 0.33 TCGA-RW-A67Y-01 2 9540191 9540191 G T ASAP2 Silent p.P908P 0.05 TCGA-RW-A67Y-01 4 69403499 69403499 G C UGT2B17 Silent p.V479V 0.91 TCGA-RW-A67Y-01 4 76721883 76721883 C G USO1 Missense_Mutation p.P608A 0.07 tolerated(0.11) possibly_damaging(0.561) TCGA-RW-A67Y-01 6 100369004 100369004 G C MCHR2 Missense_Mutation p.Q279E 0.08 tolerated(0.13) benign(0.171) TCGA-RW-A67Y-01 7 97820972 97820972 G A LMTK2 Missense_Mutation p.A399T 0.48 tolerated(1) benign(0.043) TCGA-RW-A67Y-01 X 68749682 68749682 C T FAM155B Silent p.C434C 0.05 TCGA-RW-A680-01 10 29840161 29840161 A T SVIL Missense_Mutation p.D64E 0.29 tolerated(0.24) benign(0.018) TCGA-RW-A680-01 10 48390173 48390173 G T RBP3 Silent p.T235T 0.11 TCGA-RW-A680-01 11 74914278 74914278 G A SLCO2B1 Intron 0.27 TCGA-RW-A680-01 12 4919742 4919742 G A KCNA6 Missense_Mutation p.V179I 0.37 tolerated(0.3) probably_damaging(0.987) TCGA-RW-A680-01 12 52967343 52967343 G A KRT74 Silent p.Y73Y 0.26 TCGA-RW-A680-01 13 24858319 24858319 C T SPATA13 Silent p.N737N 0.07 TCGA-RW-A680-01 14 105517581 105517581 G A GPR132 Missense_Mutation p.T298M 0.25 deleterious(0) probably_damaging(0.998) TCGA-RW-A680-01 15 56032588 56032605 GCAAGATGAGCTTTTTGA - PRTG In_Frame_Del p.Q125_A130del 0.17 TCGA-RW-A680-01 16 20952798 20952798 A G DNAH3 Missense_Mutation p.V3860A 0.39 tolerated(1) benign(0.258) TCGA-RW-A680-01 17 42153351 42153351 C T G6PC3 Silent p.L327L 0.09 TCGA-RW-A680-01 17 72522084 72522084 C T CD300LB Missense_Mutation p.C95Y 0.11 deleterious(0) probably_damaging(0.985) TCGA-RW-A680-01 19 57743156 57743156 G T AURKC Splice_Site p.X35_splice 0.09 TCGA-RW-A680-01 1 158300810 158300810 G C CD1B Missense_Mutation p.S35C 0.04 deleterious(0.01) probably_damaging(0.984) TCGA-RW-A680-01 1 169100776 169100776 A G ATP1B1 Missense_Mutation p.I299V 0.04 tolerated(0.14) benign(0.012) TCGA-RW-A680-01 1 235940409 235940409 A G LYST Missense_Mutation p.L1805P 0.06 deleterious(0) possibly_damaging(0.715) TCGA-RW-A680-01 1 247654533 247654533 G T OR2W5 RNA 0.24 TCGA-RW-A680-01 1 55279581 55279581 C T C1orf177 Missense_Mutation p.P286L 0.44 deleterious(0.01) possibly_damaging(0.625) TCGA-RW-A680-01 1 86210382 86210382 C T COL24A1 Missense_Mutation p.D1547N 0.57 deleterious(0) probably_damaging(1) TCGA-RW-A680-01 21 40781999 40781999 G A LCA5L Silent p.I396I 0.35 TCGA-RW-A680-01 22 18910327 18910327 C T PRODH Intron 0.36 TCGA-RW-A680-01 5 45262355 45262355 G A HCN1 Missense_Mutation p.R781W 0.22 deleterious_low_confidence(0) possibly_damaging(0.867) TCGA-RW-A680-01 6 121491568 121491568 C T TBC1D32 Intron 0.23 TCGA-RW-A680-01 6 151672064 151672064 G A AKAP12 Silent p.V846V 0.40 TCGA-RW-A680-01 6 29080275 29080275 T C OR2J3 Missense_Mutation p.M203T 0.11 deleterious(0.03) benign(0.005) TCGA-RW-A680-01 6 43415485 43415485 C T ABCC10 Missense_Mutation p.P1257S 0.45 tolerated(0.13) possibly_damaging(0.619) TCGA-RW-A680-01 7 100391825 100391825 C T ZAN Intron 0.47 TCGA-RW-A680-01 7 143018823 143018823 A T CLCN1 Missense_Mutation p.E193V 0.36 deleterious(0) probably_damaging(1) TCGA-RW-A680-01 7 44154459 44154459 C G POLD2 Silent p.L445L 0.34 TCGA-RW-A680-01 8 68965465 68965465 A C PREX2 Missense_Mutation p.E359D 0.13 deleterious(0) probably_damaging(0.978) TCGA-RW-A680-01 8 94747087 94747087 T C RBM12B Missense_Mutation p.I518V 0.23 tolerated(1) benign(0) TCGA-RW-A680-01 9 136344186 136344186 G A SLC2A6 5'UTR 0.50 TCGA-RW-A680-01 9 138376461 138376461 C T PPP1R26 Silent p.D35D 0.33 TCGA-RW-A680-01 X 140996020 140996020 G T MAGEC1 Missense_Mutation p.G944C 0.41 deleterious(0) unknown(0) TCGA-RW-A680-01 X 38156540 38156540 G T RPGR Missense_Mutation p.P471T 0.06 possibly_damaging(0.719) TCGA-RW-A680-01 X 76855943 76855943 G A ATRX Missense_Mutation p.P1886L 0.37 probably_damaging(1) TCGA-RW-A681-01 10 122619631 122619631 G C WDR11 Missense_Mutation p.W121C 0.26 deleterious(0) probably_damaging(0.999) TCGA-RW-A681-01 10 445145 445145 G C DIP2C Missense_Mutation p.F388L 0.33 deleterious(0.02) benign(0.257) TCGA-RW-A681-01 10 98808821 98808821 G A SLIT1 Silent p.D452D 0.13 TCGA-RW-A681-01 11 31086025 31086025 G C DCDC1 Missense_Mutation p.S861C 0.53 deleterious(0.02) probably_damaging(0.947) TCGA-RW-A681-01 11 66457285 66457285 C A SPTBN2 Silent p.A1980A 0.98 TCGA-RW-A681-01 12 10959260 10959260 T C TAS2R8 Missense_Mutation p.Y107C 0.51 deleterious(0.02) possibly_damaging(0.859) TCGA-RW-A681-01 12 120510313 120510313 A G CCDC64 Splice_Site p.X364_splice 0.30 TCGA-RW-A681-01 16 29989145 29989146 CT - TAOK2 Frame_Shift_Del p.F19Lfs*4 0.40 TCGA-RW-A681-01 16 69404385 69404385 C T TERF2 Splice_Site p.X238_splice 0.05 TCGA-RW-A681-01 17 39637289 39637289 C A KRT35 Missense_Mutation p.A21S 0.21 tolerated(1) benign(0.003) TCGA-RW-A681-01 17 51901892 51901892 A C KIF2B Missense_Mutation p.T500P 0.55 deleterious(0) probably_damaging(0.997) TCGA-RW-A681-01 17 73825012 73825012 C A UNC13D Missense_Mutation p.V1003L 0.39 deleterious(0) probably_damaging(1) TCGA-RW-A681-01 19 7831056 7831056 A G CLEC4M Silent p.Q249Q 0.56 TCGA-RW-A681-01 1 115268982 115268985 TGTT - CSDE1 Frame_Shift_Del p.K542Rfs*14 0.88 TCGA-RW-A681-01 1 1233463 1233463 G A ACAP3 Missense_Mutation p.R316C 0.13 deleterious(0) probably_damaging(0.997) TCGA-RW-A681-01 1 198498307 198498307 T A ATP6V1G3 Missense_Mutation p.K29N 0.38 deleterious(0) probably_damaging(1) TCGA-RW-A681-01 1 86934788 86934788 A C CLCA1 Missense_Mutation p.E45A 1.00 deleterious(0) probably_damaging(1) TCGA-RW-A681-01 2 172306405 172306405 A T DCAF17 Missense_Mutation p.T159S 0.06 tolerated(0.27) possibly_damaging(0.679) TCGA-RW-A681-01 2 179455966 179455966 T A TTN Silent p.V20162V 0.33 TCGA-RW-A681-01 2 55900135 55900135 T C PNPT1 Silent p.Q253Q 0.28 TCGA-RW-A681-01 4 1235191 1235191 G T CTBP1 Intron 0.37 TCGA-RW-A681-01 5 176952164 176952164 C T FAM193B Missense_Mutation p.A440T 0.08 tolerated_low_confidence(0.12) benign(0.003) TCGA-RW-A681-01 7 138313042 138313042 C A SVOPL Missense_Mutation p.L310F 0.39 tolerated(0.53) possibly_damaging(0.786) TCGA-RW-A681-01 7 48314395 48314395 G T ABCA13 Missense_Mutation p.G1711V 0.19 possibly_damaging(0.741) TCGA-RW-A681-01 7 99091213 99091213 C T ZNF394 Missense_Mutation p.R542Q 0.48 tolerated(0.33) benign(0.046) TCGA-RW-A681-01 X 63412784 63412784 G A AMER1 Missense_Mutation p.P128L 0.49 deleterious(0.01) benign(0.052) TCGA-RW-A684-01 10 13712496 13712496 G A FRMD4A Silent p.P428P 0.32 TCGA-RW-A684-01 10 70645882 70645882 G A STOX1 Missense_Mutation p.R777K 0.07 tolerated(0.83) benign(0.007) TCGA-RW-A684-01 11 73074835 73074835 A - ARHGEF17 Frame_Shift_Del p.N1764Tfs*3 0.23 TCGA-RW-A684-01 12 81741405 81741405 C A PPFIA2 Silent p.L713L 0.08 TCGA-RW-A684-01 18 77137387 77137387 G A ATP9B 3'UTR 0.39 TCGA-RW-A684-01 1 158582669 158582669 C T SPTA1 Missense_Mutation p.E2358K 0.29 deleterious(0) probably_damaging(0.979) TCGA-RW-A684-01 1 35579445 35579445 G C ZMYM1 Missense_Mutation p.A672P 0.19 tolerated(0.11) possibly_damaging(0.692) TCGA-RW-A684-01 20 39990877 39990877 C T EMILIN3 Silent p.G444G 0.34 TCGA-RW-A684-01 2 31573040 31573040 T C XDH Missense_Mutation p.N894S 0.19 deleterious(0.01) possibly_damaging(0.734) TCGA-RW-A684-01 3 38781061 38781061 A G SCN10A Missense_Mutation p.L742P 0.38 deleterious(0) possibly_damaging(0.794) TCGA-RW-A684-01 4 100047875 100047875 T - ADH4 Frame_Shift_Del p.S330Vfs*2 0.23 TCGA-RW-A684-01 4 70346370 70346370 C T UGT2B4 Silent p.K523K 0.16 TCGA-RW-A684-01 5 169454924 169454924 G T DOCK2 Nonsense_Mutation p.E1147* 0.05 TCGA-RW-A684-01 5 179193112 179193112 A C MAML1 Silent p.S367S 0.10 TCGA-RW-A684-01 5 90074890 90074890 T G GPR98 Missense_Mutation p.I4353S 0.13 possibly_damaging(0.803) TCGA-RW-A684-01 6 138201287 138201287 C T TNFAIP3 Silent p.C662C 0.07 TCGA-RW-A684-01 7 155503998 155503998 G A RBM33 Silent p.P350P 0.08 TCGA-RW-A684-01 8 38274849 38274849 G T FGFR1 Missense_Mutation p.N577K 0.44 deleterious(0) probably_damaging(1) TCGA-RW-A684-01 9 27180335 27180335 A G TEK Silent p.P333P 0.35 TCGA-RW-A684-01 9 84228341 84228341 A G TLE1 Silent p.R338R 0.06 TCGA-RW-A685-01 11 105880756 105880756 G C MSANTD4 Missense_Mutation p.H182D 0.20 tolerated(0.07) benign(0.153) TCGA-RW-A685-01 12 64818384 64818384 A G XPOT Silent p.E396E 0.35 TCGA-RW-A685-01 17 29554565 29554565 T A NF1 Missense_Mutation p.W784R 0.42 deleterious(0) probably_damaging(0.986) TCGA-RW-A685-01 17 76212110 76212110 C A BIRC5 Silent p.I95I 0.11 TCGA-RW-A685-01 1 151786011 151786011 C T RORC Missense_Mutation p.G340D 0.28 deleterious(0) probably_damaging(1) TCGA-RW-A685-01 1 76200505 76200505 T A ACADM Missense_Mutation p.D143E 0.18 tolerated(1) benign(0) TCGA-RW-A685-01 22 24628063 24628063 G T GGT5 Missense_Mutation p.T237K 0.40 tolerated(0.17) benign(0.106) TCGA-RW-A685-01 2 216264046 216264046 G A FN1 Silent p.Y1094Y 0.33 TCGA-RW-A685-01 5 140856203 140856203 C G PCDHGC3 Missense_Mutation p.L174V 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-RW-A685-01 6 43167852 43167852 C T CUL9 Silent p.L1114L 0.26 TCGA-RW-A685-01 7 39247055 39247055 C T POU6F2 Missense_Mutation p.A116V 0.27 deleterious(0) possibly_damaging(0.753) TCGA-RW-A685-01 8 103662557 103662557 G C KLF10 Missense_Mutation p.L416V 0.07 deleterious(0) probably_damaging(0.999) TCGA-RW-A685-01 9 123342198 123342198 C T CDK5RAP2 Missense_Mutation p.S20N 0.44 deleterious(0.01) benign(0.213) TCGA-RW-A686-01 10 33217043 33217045 TCC - ITGB1 In_Frame_Del p.R175del 0.41 TCGA-RW-A686-01 17 42430230 42430230 C G GRN 3'UTR 0.47 TCGA-RW-A686-01 17 60742089 60742089 G A MRC2 Missense_Mutation p.G100D 0.32 tolerated(0.38) benign(0.097) TCGA-RW-A686-01 20 56138155 56138155 A T PCK1 Missense_Mutation p.I228F 0.29 deleterious(0) probably_damaging(0.99) TCGA-RW-A686-01 22 23523743 23523743 G A BCR Missense_Mutation p.R199H 0.08 deleterious_low_confidence(0) benign(0.105) TCGA-RW-A686-01 22 30858116 30858116 C - SEC14L3 Frame_Shift_Del p.G243Afs*3 0.17 TCGA-RW-A686-01 22 36624072 36624072 G C APOL2 Missense_Mutation p.T131S 0.33 tolerated(0.21) benign(0.027) TCGA-RW-A686-01 2 215910616 215910616 A T ABCA12 Missense_Mutation p.F273I 0.31 tolerated(0.1) benign(0.002) TCGA-RW-A686-01 2 71740930 71740930 G A DYSF Missense_Mutation p.G213E 0.13 tolerated(0.21) benign(0.016) TCGA-RW-A686-01 3 48696931 48696931 G A CELSR3 Missense_Mutation p.P1046L 0.30 deleterious(0) probably_damaging(0.938) TCGA-RW-A686-01 4 81188037 81188037 C T FGF5 Missense_Mutation p.A20V 0.06 deleterious_low_confidence(0) benign(0.197) TCGA-RW-A688-01 11 34673125 34673125 A G EHF Missense_Mutation p.Y170C 0.48 tolerated(0.16) possibly_damaging(0.855) TCGA-RW-A688-01 12 110825686 110825686 G - ANAPC7 Frame_Shift_Del p.L212Ffs*3 0.29 TCGA-RW-A688-01 12 16516841 16516841 G A MGST1 Missense_Mutation p.G112R 0.36 deleterious(0.02) benign(0.067) TCGA-RW-A688-01 14 94110024 94110024 A G UNC79 Missense_Mutation p.I1871V 0.49 deleterious(0.04) probably_damaging(0.976) TCGA-RW-A688-01 15 102292950 102292950 C A DNM1P47 RNA 0.19 TCGA-RW-A688-01 15 65962141 65962141 A C DENND4A Missense_Mutation p.V1587G 0.62 tolerated(0.38) benign(0.028) TCGA-RW-A688-01 17 29496993 29496993 A - NF1 Frame_Shift_Del p.K189Nfs*2 0.43 TCGA-RW-A688-01 19 36124121 36124121 G T RBM42 Silent p.P217P 0.40 TCGA-RW-A688-01 1 212788568 212788568 G A ATF3 Missense_Mutation p.D69N 0.08 tolerated(0.23) benign(0.002) TCGA-RW-A688-01 1 32204531 32204531 G A BAI2 Silent p.L835L 0.38 TCGA-RW-A688-01 1 32204532 32204532 C T BAI2 Silent p.P834P 0.38 TCGA-RW-A688-01 22 26890809 26890809 C A TFIP11 Missense_Mutation p.S649I 0.08 tolerated(0.44) possibly_damaging(0.765) TCGA-RW-A688-01 3 51697226 51697226 G C RAD54L2 Silent p.A1398A 0.58 TCGA-RW-A688-01 6 79675671 79675671 T C PHIP Missense_Mutation p.Y1103C 0.12 deleterious(0) possibly_damaging(0.846) TCGA-RW-A688-01 8 94934280 94934280 C G PDP1 Missense_Mutation p.S23C 0.28 tolerated_low_confidence(0.06) benign(0.184) TCGA-RW-A688-01 X 70350001 70350001 T A MED12 Missense_Mutation p.H1328Q 0.55 benign(0.076) TCGA-RW-A688-01 X 71425181 71425181 G T ERCC6L Missense_Mutation p.P1146T 0.48 deleterious(0.03) possibly_damaging(0.851) TCGA-RW-A689-01 10 35456601 35456601 A T CREM Intron 0.42 TCGA-RW-A689-01 11 26677925 26677925 A G ANO3 Missense_Mutation p.Y887C 0.07 deleterious(0) probably_damaging(1) TCGA-RW-A689-01 12 12240321 12240321 G A BCL2L14 Splice_Site p.X203_splice 0.07 TCGA-RW-A689-01 12 122990196 122990196 G A RSRC2 Nonsense_Mutation p.Q395* 0.38 TCGA-RW-A689-01 16 15130137 15130137 C G PDXDC1 3'UTR 0.44 TCGA-RW-A689-01 16 88874571 88874571 G C CDT1 Missense_Mutation p.W509S 0.14 deleterious(0) probably_damaging(1) TCGA-RW-A689-01 17 29588743 29588743 T - NF1 Frame_Shift_Del p.G1532Efs*42 0.41 TCGA-RW-A689-01 17 44952701 44952701 C A WNT9B Missense_Mutation p.A190E 0.43 deleterious(0.01) benign(0.331) TCGA-RW-A689-01 19 14752291 14752291 C T EMR3 Silent p.S396S 0.39 TCGA-RW-A689-01 1 145109547 145109547 G T SEC22B RNA 0.04 TCGA-RW-A689-01 1 151739705 151739705 C T OAZ3 Missense_Mutation p.S33F 0.08 tolerated(0.14) benign(0.009) TCGA-RW-A689-01 2 99170841 99170841 G A INPP4A Silent p.S490S 0.38 TCGA-RW-A689-01 4 69202911 69202911 T C YTHDC1 Silent p.E239E 0.42 TCGA-RW-A689-01 5 39394425 39394425 C A DAB2 5'UTR 0.08 TCGA-RW-A689-01 5 79032506 79032506 C G CMYA5 Missense_Mutation p.L2640V 0.36 possibly_damaging(0.889) TCGA-RW-A689-01 7 23207596 23207596 G T KLHL7 Missense_Mutation p.G440V 0.31 deleterious(0) probably_damaging(0.995) TCGA-RW-A68A-01 10 64429987 64429987 T C ZNF365 Silent p.L439L 0.02 TCGA-RW-A68A-01 16 30016750 30016750 A T INO80E Missense_Mutation p.D241V 0.33 deleterious(0) probably_damaging(0.997) TCGA-RW-A68A-01 20 49247340 49247340 G A FAM65C Silent p.A15A 0.41 TCGA-RW-A68A-01 21 46117404 46117404 C T KRTAP10-12 Silent p.T96T 0.18 TCGA-RW-A68A-01 2 108489272 108489272 G A RGPD4 Silent p.L1604L 0.36 TCGA-RW-A68A-01 2 228883669 228883669 C T SPHKAP Missense_Mutation p.S634N 0.51 tolerated(0.12) benign(0.13) TCGA-RW-A68A-01 2 32819095 32819095 C T BIRC6 Missense_Mutation p.A4490V 0.07 benign(0.036) TCGA-RW-A68A-01 6 158517437 158517437 C T SYNJ2 3'UTR 0.48 TCGA-RW-A68A-01 7 100677614 100677614 A C MUC17 Missense_Mutation p.I973L 0.16 benign(0.189) TCGA-RW-A68B-01 12 53708589 53708589 T C AAAS Missense_Mutation p.N164S 0.13 tolerated(0.7) benign(0.018) TCGA-RW-A68B-01 16 70395318 70395318 T G DDX19A Intron 0.49 TCGA-RW-A68B-01 18 12329480 12329480 T A TUBB6 3'Flank 0.57 TCGA-RW-A68B-01 1 160971131 160971131 A G F11R Missense_Mutation p.L26S 0.07 tolerated(0.09) benign(0.11) TCGA-RW-A68B-01 20 3128950 3128950 C T FASTKD5 Missense_Mutation p.R256H 0.05 tolerated(0.14) benign(0.025) TCGA-RW-A68B-01 6 169650833 169650833 G A THBS2 Missense_Mutation p.T16M 0.41 tolerated_low_confidence(0.26) benign(0.075) TCGA-RW-A68B-01 6 29574694 29574694 G A GABBR1 Missense_Mutation p.P733S 0.28 deleterious(0) probably_damaging(0.995) TCGA-RW-A68C-01 11 55926912 55926912 G A OR8K5 Silent p.N294N 0.07 TCGA-RW-A68C-01 14 37198737 37198737 C T SLC25A21 Missense_Mutation p.G102E 0.12 tolerated(1) benign(0.033) TCGA-RW-A68C-01 14 70989875 70989875 T C ADAM20 Missense_Mutation p.I584V 0.08 tolerated(0.58) benign(0.023) TCGA-RW-A68C-01 19 6821671 6821671 C A VAV1 Silent p.I120I 0.21 TCGA-RW-A68C-01 1 101186144 101186144 G C VCAM1 Missense_Mutation p.W59C 0.08 deleterious(0) probably_damaging(1) TCGA-RW-A68C-01 1 102270459 102270459 C T OLFM3 Missense_Mutation p.D238N 0.08 deleterious(0.02) probably_damaging(0.997) TCGA-RW-A68C-01 1 39878320 39878320 G A KIAA0754 Missense_Mutation p.G659R 0.10 benign(0.001) TCGA-RW-A68C-01 2 240923039 240923039 G A NDUFA10 Intron 0.36 TCGA-RW-A68C-01 2 70485303 70485303 C T PCYOX1 Missense_Mutation p.R3C 0.35 deleterious_low_confidence(0.03) probably_damaging(0.93) TCGA-RW-A68C-01 3 5024941 5024941 G A BHLHE40 Missense_Mutation p.R268K 0.08 tolerated(1) benign(0.001) TCGA-RW-A68C-01 5 154183828 154183828 T A LARP1 Missense_Mutation p.M759K 0.12 deleterious(0) probably_damaging(0.988) TCGA-RW-A68C-01 9 21202068 21202068 G A IFNA7 Missense_Mutation p.R33C 0.04 tolerated(0.14) probably_damaging(0.987) TCGA-RW-A68C-01 9 8389380 8389380 G T PTPRD Missense_Mutation p.A1413D 0.07 deleterious(0) possibly_damaging(0.712) TCGA-RW-A68D-01 11 33047366 33047366 C G DEPDC7 Missense_Mutation p.L79V 0.03 deleterious(0.03) possibly_damaging(0.842) TCGA-RW-A68D-01 14 89206879 89206879 C T EML5 Missense_Mutation p.R188Q 0.06 deleterious(0.01) possibly_damaging(0.884) TCGA-RW-A68D-01 15 45951173 45951173 T A SQRDL Missense_Mutation p.C18S 0.64 tolerated_low_confidence(0.7) benign(0.001) TCGA-RW-A68D-01 15 81591746 81591746 C T IL16 Silent p.H693H 0.38 TCGA-RW-A68D-01 17 41926251 41926251 C T CD300LG Silent p.F123F 0.42 TCGA-RW-A68D-01 17 62050057 62050057 C T SCN4A Missense_Mutation p.E49K 0.16 deleterious(0.04) benign(0.033) TCGA-RW-A68D-01 22 42394792 42394792 A G WBP2NL 5'UTR 0.27 TCGA-RW-A68D-01 2 46607406 46607406 A G EPAS1 Missense_Mutation p.Y532C 0.51 deleterious(0) probably_damaging(1) TCGA-RW-A68D-01 5 139947373 139947373 G T SLC35A4 Nonsense_Mutation p.E207* 0.42 TCGA-RW-A68D-01 5 150701572 150701572 A T SLC36A2 Intron 0.39 TCGA-RW-A68D-01 5 68412389 68412389 G C SLC30A5 Missense_Mutation p.S414T 0.24 tolerated(0.63) benign(0.007) TCGA-RW-A68D-01 7 13975516 13975516 T C ETV1 Missense_Mutation p.Y124C 0.07 tolerated(0.16) benign(0.25) TCGA-RW-A68D-01 9 32784904 32784904 G C TMEM215 3'UTR 0.08 TCGA-RW-A68D-01 9 7799665 7799665 C T TMEM261 Missense_Mutation p.A24T 0.08 tolerated(0.12) benign(0.174) TCGA-RW-A68D-01 9 97864024 97864024 G A FANCC Nonsense_Mutation p.R548* 0.43 TCGA-RW-A68F-01 10 35928890 35928890 C A FZD8 Missense_Mutation p.V490F 0.11 tolerated(0.86) possibly_damaging(0.474) TCGA-RW-A68F-01 11 45827751 45827751 C G SLC35C1 Silent p.L133L 0.74 TCGA-RW-A68F-01 11 77386295 77386295 T C RSF1 Silent p.Q1116Q 0.65 TCGA-RW-A68F-01 12 120536942 120536942 G A RAB35 Missense_Mutation p.H82Y 0.49 deleterious(0) probably_damaging(1) TCGA-RW-A68F-01 12 122611891 122611891 C T MLXIP Missense_Mutation p.R168W 0.43 deleterious(0) probably_damaging(1) TCGA-RW-A68F-01 12 47172479 47172479 C T SLC38A4 Silent p.T266T 0.41 TCGA-RW-A68F-01 1 109338934 109338934 A - STXBP3 Frame_Shift_Del p.N398Ifs*8 0.28 TCGA-RW-A68F-01 1 205687522 205687522 T C NUCKS1 Silent p.K206K 0.36 TCGA-RW-A68F-01 1 53377454 53377454 C T ECHDC2 Missense_Mutation p.E44K 0.59 tolerated(0.06) probably_damaging(0.995) TCGA-RW-A68F-01 2 101893717 101893717 C T RNF149 Missense_Mutation p.G396R 0.31 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-RW-A68F-01 4 122250693 122250693 G C QRFPR Missense_Mutation p.P358A 0.04 deleterious(0.01) benign(0.017) TCGA-RW-A68F-01 5 70757730 70757730 T C BDP1 Silent p.Y192Y 0.05 TCGA-RW-A68F-01 6 24596193 24596193 G A KIAA0319 Missense_Mutation p.P237S 0.18 tolerated(0.19) benign(0.01) TCGA-RW-A68F-01 X 109695456 109695456 C T RGAG1 Silent p.S537S 0.39 TCGA-RW-A68F-01 X 110439691 110439691 C G PAK3 Silent p.A446A 0.10 TCGA-RW-A68F-01 X 53268384 53268384 C A IQSEC2 Missense_Mutation p.Q1036H 0.08 deleterious(0) probably_damaging(0.916) TCGA-RW-A68F-01 X 70460725 70460725 C T ZMYM3 3'UTR 0.45 TCGA-RW-A68G-01 13 35644944 35644944 T C NBEA Missense_Mutation p.L509S 0.16 deleterious(0) probably_damaging(0.938) TCGA-RW-A68G-01 16 14972620 14972620 T C NOMO1 Missense_Mutation p.S896P 0.09 deleterious(0) probably_damaging(1) TCGA-RW-A68G-01 2 17696549 17696549 T C RAD51AP2 Missense_Mutation p.Q1045R 0.06 deleterious(0.03) possibly_damaging(0.479) TCGA-RW-A68G-01 7 16818665 16818665 C T TSPAN13 Missense_Mutation p.A155V 0.21 tolerated(0.48) probably_damaging(0.957) TCGA-RW-A7CZ-01 11 67079325 67079325 C T SSH3 Silent p.S649S 0.34 TCGA-RW-A7CZ-01 11 7334941 7334941 A T SYT9 Missense_Mutation p.K271N 0.05 deleterious(0) probably_damaging(0.999) TCGA-RW-A7CZ-01 14 39871700 39871700 A C FBXO33 Missense_Mutation p.F205L 0.31 tolerated(1) benign(0) TCGA-RW-A7CZ-01 19 35233102 35233102 A G ZNF181 3'Flank 0.15 TCGA-RW-A7CZ-01 19 9645923 9645923 G A ZNF426 Missense_Mutation p.H20Y 0.07 tolerated(0.68) benign(0) TCGA-RW-A7CZ-01 1 230930958 230930958 G A CAPN9 Silent p.A640A 0.12 TCGA-RW-A7CZ-01 1 59248091 59248091 G A JUN Nonsense_Mutation p.Q218* 0.19 TCGA-RW-A7CZ-01 22 22664128 22664128 G A BMS1P20 RNA 0.05 TCGA-RW-A7CZ-01 3 155241774 155241774 T C PLCH1 Missense_Mutation p.H449R 0.37 deleterious(0.03) possibly_damaging(0.459) TCGA-RW-A7CZ-01 3 73432662 73432662 C T PDZRN3 Missense_Mutation p.E1019K 0.04 deleterious(0) possibly_damaging(0.604) TCGA-RW-A7CZ-01 5 140574405 140574405 C T PCDHB10 Silent p.G760G 0.13 TCGA-RW-A7CZ-01 6 13185173 13185173 C A PHACTR1 Silent p.P155P 0.25 TCGA-RW-A7CZ-01 6 32150435 32150435 T C AGER Silent p.P244P 0.06 TCGA-RW-A7CZ-01 7 150913092 150913092 G A ABCF2 Silent p.I454I 0.11 TCGA-RW-A7CZ-01 8 113237069 113237069 G A CSMD3 Silent p.N3685N 0.31 TCGA-RW-A7CZ-01 X 100880328 100880328 C G ARMCX3 Missense_Mutation p.P120R 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-RW-A7CZ-01 X 49143521 49143521 C T PPP1R3F Missense_Mutation p.A790V 0.10 tolerated_low_confidence(0.41) benign(0.01) TCGA-RW-A7CZ-01 X 69458182 69458182 C A AWAT1 Missense_Mutation p.T194N 0.33 deleterious(0.02) benign(0.017) TCGA-RW-A7D0-01 11 61183138 61183148 CTGCACTGGCT - CPSF7 Frame_Shift_Del p.A402Gfs*4 0.35 TCGA-RW-A7D0-01 11 61605324 61605324 G A FADS2 Silent p.L94L 0.24 TCGA-RW-A7D0-01 11 7960834 7960834 C T OR10A3 Silent p.T78T 0.14 TCGA-RW-A7D0-01 13 28919665 28919665 C A FLT1 Nonsense_Mutation p.E758* 0.24 TCGA-RW-A7D0-01 17 29528481 29528481 C G NF1 Nonsense_Mutation p.S413* 0.45 TCGA-RW-A7D0-01 19 50185323 50185323 G C PRMT1 Splice_Site p.X116_splice 0.06 TCGA-RW-A7D0-01 1 20232993 20232993 G A OTUD3 Missense_Mutation p.G302S 0.38 tolerated(0.08) possibly_damaging(0.833) TCGA-RW-A7D0-01 20 34205716 34205716 C T SPAG4 Silent p.I164I 0.33 TCGA-RW-A7D0-01 21 46032334 46032334 C T KRTAP10-8 Missense_Mutation p.P106L 0.33 tolerated(0.08) unknown(0) TCGA-RW-A7D0-01 22 25016897 25016897 A T GGT1 Missense_Mutation p.D198V 0.12 deleterious(0.04) possibly_damaging(0.707) TCGA-RW-A7D0-01 5 178358732 178358732 A G ZFP2 Missense_Mutation p.I140V 0.47 tolerated(0.48) benign(0.114) TCGA-RW-A7D0-01 8 68934377 68934377 T A PREX2 Splice_Site p.X147_splice 0.35 TCGA-RW-A8AZ-01 10 129537028 129537028 G A FOXI2 Missense_Mutation p.M252I 0.43 deleterious(0.02) benign(0.107) TCGA-RW-A8AZ-01 10 27406652 27406652 A C YME1L1 Silent p.P581P 0.34 TCGA-RW-A8AZ-01 11 32450088 32450088 G T WT1 Missense_Mutation p.H242N 0.27 deleterious_low_confidence(0.03) benign(0.023) TCGA-RW-A8AZ-01 12 32480574 32480574 G C BICD1 Missense_Mutation p.K395N 0.33 tolerated(0.15) probably_damaging(0.95) TCGA-RW-A8AZ-01 13 74339086 74339086 T C KLF12 Silent p.Q286Q 0.40 TCGA-RW-A8AZ-01 14 97022548 97022548 A - PAPOLA Frame_Shift_Del p.Q601Hfs*22 0.31 TCGA-RW-A8AZ-01 15 45386413 45386413 T C DUOX2 Missense_Mutation p.K1528E 0.32 deleterious(0) possibly_damaging(0.747) TCGA-RW-A8AZ-01 16 28909760 28909760 C T ATP2A1 Silent p.F584F 0.15 TCGA-RW-A8AZ-01 16 84693464 84693464 T A KLHL36 Silent p.S412S 0.35 TCGA-RW-A8AZ-01 17 66521051 66521051 A G PRKAR1A Splice_Site p.X168_splice 0.36 TCGA-RW-A8AZ-01 17 7129360 7129360 G A DVL2 Missense_Mutation p.P679S 0.42 tolerated(0.73) possibly_damaging(0.876) TCGA-RW-A8AZ-01 19 9000200 9000200 G C MUC16 Missense_Mutation p.F13519L 0.33 benign(0.278) TCGA-RW-A8AZ-01 1 151260658 151260658 C T ZNF687 Missense_Mutation p.P631S 0.30 tolerated(0.24) benign(0.004) TCGA-RW-A8AZ-01 1 228596255 228596255 C A TRIM17 Missense_Mutation p.G361W 0.34 deleterious(0.01) probably_damaging(1) TCGA-RW-A8AZ-01 20 31984647 31984647 G A CDK5RAP1 Missense_Mutation p.P75L 0.44 tolerated(0.08) benign(0.003) TCGA-RW-A8AZ-01 20 42965958 42965958 G A R3HDML Missense_Mutation p.R54Q 0.47 tolerated(0.32) benign(0.025) TCGA-RW-A8AZ-01 22 17619599 17619599 A G CECR5 Missense_Mutation p.L259P 0.37 deleterious(0) probably_damaging(0.998) TCGA-RW-A8AZ-01 2 128262518 128262518 A G IWS1 Missense_Mutation p.S321P 0.38 tolerated_low_confidence(0.26) benign(0.247) TCGA-RW-A8AZ-01 2 228882283 228882283 T A SPHKAP Missense_Mutation p.Y1096F 0.11 tolerated(0.67) benign(0.003) TCGA-RW-A8AZ-01 2 32693033 32693033 C G BIRC6 Nonsense_Mutation p.Y1878* 0.44 TCGA-RW-A8AZ-01 3 196387237 196387237 C T NRROS Silent p.F241F 0.40 TCGA-RW-A8AZ-01 3 89478273 89478273 G A EPHA3 Missense_Mutation p.V698I 0.39 tolerated(0.88) probably_damaging(0.986) TCGA-RW-A8AZ-01 4 140641376 140641376 G A MAML3 Missense_Mutation p.P840S 0.40 possibly_damaging(0.698) TCGA-RW-A8AZ-01 4 186379809 186379809 A G CCDC110 Silent p.L644L 0.09 TCGA-RW-A8AZ-01 4 187521348 187521348 G T FAT1 Missense_Mutation p.T3936K 0.36 possibly_damaging(0.794) TCGA-RW-A8AZ-01 4 42403414 42403414 C G SHISA3 Silent p.L221L 0.21 TCGA-RW-A8AZ-01 6 75893251 75893251 C A COL12A1 Missense_Mutation p.S469I 0.40 probably_damaging(0.999) TCGA-RW-A8AZ-01 9 131140374 131140374 A T URM1 Missense_Mutation p.Q32L 0.32 deleterious(0.04) possibly_damaging(0.723) TCGA-RW-A8AZ-01 9 139911685 139911685 G A ABCA2 Missense_Mutation p.A839V 0.52 tolerated(0.08) probably_damaging(0.994) TCGA-RW-A8AZ-01 9 35853200 35853200 C G TMEM8B Silent p.L343L 0.42 TCGA-RW-A8AZ-01 9 39118252 39118252 T C CNTNAP3 Silent p.G695G 0.40 TCGA-RW-A8AZ-01 X 76937831 76937834 GGTC - ATRX Frame_Shift_Del p.D972Rfs*30 0.80 TCGA-RX-A8JQ-01 11 376159 376159 C T B4GALNT4 Missense_Mutation p.P394L 0.36 deleterious(0) probably_damaging(0.996) TCGA-RX-A8JQ-01 17 37922252 37922252 C T IKZF3 Missense_Mutation p.V441M 0.09 deleterious(0) probably_damaging(0.999) TCGA-RX-A8JQ-01 17 7948675 7948675 C T ALOX15B Silent p.C323C 0.35 TCGA-RX-A8JQ-01 19 35940863 35940863 G A FFAR2 Missense_Mutation p.A83T 0.15 tolerated(0.08) probably_damaging(0.976) TCGA-RX-A8JQ-01 1 185108572 185108572 A G TRMT1L Missense_Mutation p.Y417H 0.08 deleterious(0) probably_damaging(1) TCGA-RX-A8JQ-01 22 22893373 22893373 G A PRAME Missense_Mutation p.P54S 0.05 deleterious(0) probably_damaging(0.987) TCGA-RX-A8JQ-01 2 196737103 196737103 C G DNAH7 Missense_Mutation p.L2168F 0.07 deleterious(0) probably_damaging(0.999) TCGA-RX-A8JQ-01 3 93714764 93714764 G A ARL13B Missense_Mutation p.A36T 0.10 tolerated(0.28) possibly_damaging(0.466) TCGA-RX-A8JQ-01 7 140481402 140481402 C G BRAF Missense_Mutation p.G469A 0.61 deleterious(0.01) possibly_damaging(0.773) TCGA-RX-A8JQ-01 9 79324952 79324952 C G PRUNE2 Missense_Mutation p.E746D 0.33 deleterious(0.04) possibly_damaging(0.874) TCGA-RX-A8JQ-01 X 46521585 46521585 C G SLC9A7 Missense_Mutation p.V303L 0.16 tolerated(0.25) benign(0.173) TCGA-S7-A7WL-01 11 64033973 64033980 GACGGAGA - PLCB3 Frame_Shift_Del p.T1122* 0.32 TCGA-S7-A7WL-01 12 51213461 51213461 A C ATF1 Missense_Mutation p.K239Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-S7-A7WL-01 14 23354529 23354529 T - REM2 Frame_Shift_Del p.Y168Mfs*84 0.28 TCGA-S7-A7WL-01 14 23371511 23371511 G A RBM23 Silent p.G337G 0.07 TCGA-S7-A7WL-01 15 43820463 43820463 C T MAP1A Silent p.T2264T 0.50 TCGA-S7-A7WL-01 16 75563184 75563184 C T CHST5 Missense_Mutation p.V367M 0.36 deleterious(0) probably_damaging(0.981) TCGA-S7-A7WL-01 17 29533281 29533293 GATTGATGCTGTG - NF1 Frame_Shift_Del p.K428Nfs*41 0.70 TCGA-S7-A7WL-01 1 153312923 153312923 C T PGLYRP4 Missense_Mutation p.R253H 0.08 tolerated(0.52) benign(0.113) TCGA-S7-A7WL-01 1 158581023 158581023 A G SPTA1 3'UTR 0.25 TCGA-S7-A7WL-01 20 35632208 35632208 C T RBL1 Missense_Mutation p.R978H 0.06 deleterious(0) probably_damaging(1) TCGA-S7-A7WL-01 2 11755408 11755408 G C GREB1 Missense_Mutation p.G1105A 0.62 tolerated(0.6) benign(0.003) TCGA-S7-A7WL-01 2 143715264 143715264 C T KYNU Missense_Mutation p.R188W 0.05 deleterious(0.01) possibly_damaging(0.842) TCGA-S7-A7WL-01 6 160184039 160184039 T G ACAT2 Silent p.A48A 0.13 TCGA-S7-A7WL-01 7 100320669 100320669 C T EPO Silent p.F165F 0.65 TCGA-S7-A7WL-01 9 35736221 35736222 - AAG CREB3 Intron 0.12 TCGA-S7-A7WL-01 9 82308561 82308561 T C TLE4 Intron 0.40 TCGA-S7-A7WL-01 9 99521448 99521448 C T ZNF510 Missense_Mutation p.R555Q 0.19 tolerated(0.47) benign(0.112) TCGA-S7-A7WL-01 X 153296731 153296731 C T MECP2 Missense_Mutation p.G195E 0.18 tolerated(0.22) probably_damaging(0.915) TCGA-S7-A7WM-01 12 6954872 6954872 G T GNB3 Silent p.T274T 0.04 TCGA-S7-A7WM-01 12 85450448 85450448 A G LRRIQ1 Missense_Mutation p.E626G 0.61 tolerated(0.26) benign(0.006) TCGA-S7-A7WM-01 15 48056089 48056089 G A SEMA6D Missense_Mutation p.G264S 0.11 deleterious(0) probably_damaging(1) TCGA-S7-A7WM-01 16 28848189 28848189 C A ATXN2L 3'UTR 0.30 TCGA-S7-A7WM-01 17 29541548 29541549 - TT NF1 Frame_Shift_Ins p.L492Ffs*7 0.40 TCGA-S7-A7WM-01 17 79287591 79287591 G T TMEM105 Missense_Mutation p.H84N 0.33 deleterious_low_confidence(0.02) benign(0.005) TCGA-S7-A7WM-01 1 205031578 205031578 A T CNTN2 Missense_Mutation p.E374V 0.34 deleterious(0.01) possibly_damaging(0.497) TCGA-S7-A7WM-01 1 247014132 247014132 T C AHCTF1 Missense_Mutation p.M1735V 0.28 tolerated(0.81) benign(0) TCGA-S7-A7WM-01 1 32122022 32122022 G T COL16A1 Missense_Mutation p.F1360L 0.19 unknown(0) TCGA-S7-A7WM-01 22 28192973 28192973 C T MN1 Missense_Mutation p.V1187I 0.24 benign(0.374) TCGA-S7-A7WM-01 2 179611732 179611732 G A TTN Intron 0.12 TCGA-S7-A7WM-01 2 64800181 64800181 A G AFTPH Silent p.T791T 0.43 TCGA-S7-A7WM-01 3 143567198 143567198 C T SLC9A9 5'UTR 0.37 TCGA-S7-A7WM-01 4 13600882 13600882 C A BOD1L1 Nonsense_Mutation p.E2548* 0.50 TCGA-S7-A7WM-01 5 256498 256498 A C SDHA Missense_Mutation p.D653A 0.05 deleterious_low_confidence(0) benign(0.358) TCGA-S7-A7WM-01 6 2893754 2893754 A G SERPINB9 Missense_Mutation p.I153T 0.34 deleterious(0.04) benign(0.159) TCGA-S7-A7WM-01 7 48258974 48258974 C T ABCA13 Missense_Mutation p.A104V 0.35 benign(0.272) TCGA-S7-A7WM-01 8 109498845 109498845 G C EMC2 3'UTR 0.45 TCGA-S7-A7WM-01 9 131832580 131832580 A C FAM73B Missense_Mutation p.T544P 0.37 deleterious(0) probably_damaging(0.966) TCGA-S7-A7WN-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.71 tolerated(0.07) benign(0.069) TCGA-S7-A7WN-01 14 65007789 65007789 G A HSPA2 Silent p.L74L 0.38 TCGA-S7-A7WN-01 15 43712934 43712934 C G TP53BP1 Splice_Site p.X1417_splice 0.29 TCGA-S7-A7WN-01 18 47421443 47421443 C T MYO5B Silent p.Q971Q 0.36 TCGA-S7-A7WN-01 1 145532464 145532464 G C ITGA10 Missense_Mutation p.G306A 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-S7-A7WN-01 4 103516122 103516122 T C NFKB1 Silent p.N428N 0.37 TCGA-S7-A7WN-01 5 60214156 60214156 G A ERCC8 Missense_Mutation p.T112I 0.30 deleterious(0) probably_damaging(0.998) TCGA-S7-A7WN-01 8 145541987 145541987 A G DGAT1 Missense_Mutation p.F205L 0.29 deleterious(0.01) benign(0.366) TCGA-S7-A7WO-01 19 51628487 51628487 G A SIGLEC9 Missense_Mutation p.E86K 0.05 tolerated(0.07) possibly_damaging(0.587) TCGA-S7-A7WO-01 1 45480006 45480006 G A UROD Intron 0.11 TCGA-S7-A7WO-01 2 1241771 1241771 G A SNTG2 Silent p.R277R 0.57 TCGA-S7-A7WO-01 3 52282461 52282461 G T PPM1M Missense_Mutation p.M90I 0.16 deleterious(0) probably_damaging(0.955) TCGA-S7-A7WO-01 X 70823569 70823569 G C ACRC Missense_Mutation p.A148P 0.03 unknown(0) TCGA-S7-A7WP-01 11 103043978 103043978 C T DYNC2H1 Silent p.G1834G 0.19 TCGA-S7-A7WP-01 12 72032295 72032295 G A ZFC3H1 Missense_Mutation p.A543V 0.26 tolerated(0.31) possibly_damaging(0.901) TCGA-S7-A7WP-01 17 72436724 72436724 A T GPRC5C Missense_Mutation p.H315L 0.05 tolerated(0.4) benign(0.002) TCGA-S7-A7WP-01 6 44250125 44250125 T G TCTE1 Missense_Mutation p.N340H 0.20 deleterious(0.01) benign(0.371) TCGA-S7-A7WQ-01 11 124440082 124440082 C T OR8A1 Missense_Mutation p.L40F 0.62 deleterious(0.05) benign(0.049) TCGA-S7-A7WQ-01 11 14284282 14284282 G T RP11-21L19.1 3'Flank 0.24 TCGA-S7-A7WQ-01 11 14284285 14284285 C G RP11-21L19.1 3'Flank 0.25 TCGA-S7-A7WQ-01 11 70052302 70052302 G C FADD Missense_Mutation p.R117P 0.28 deleterious(0) probably_damaging(1) TCGA-S7-A7WQ-01 15 99486194 99486194 G A IGF1R Missense_Mutation p.R1167Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-S7-A7WQ-01 17 16456249 16456249 T C ZNF287 Missense_Mutation p.K403E 0.13 deleterious(0) benign(0.001) TCGA-S7-A7WQ-01 17 8215743 8215743 C T ARHGEF15 Missense_Mutation p.T129M 0.13 deleterious_low_confidence(0.04) benign(0) TCGA-S7-A7WQ-01 1 1421933 1421933 C A ATAD3B Missense_Mutation p.L367M 0.14 tolerated(0.32) benign(0.043) TCGA-S7-A7WQ-01 1 36823840 36823840 C T STK40 Silent p.Q114Q 0.26 TCGA-S7-A7WQ-01 1 43882233 43882233 C A SZT2 Missense_Mutation p.T267N 0.14 deleterious(0.01) possibly_damaging(0.731) TCGA-S7-A7WQ-01 3 21462913 21462913 A T ZNF385D Silent p.P327P 0.14 TCGA-S7-A7WQ-01 3 58552410 58552410 G A FAM107A Missense_Mutation p.P114S 0.22 tolerated(0.33) benign(0.3) TCGA-S7-A7WQ-01 5 68661172 68661172 A C TAF9 Silent p.S131S 0.05 TCGA-S7-A7WQ-01 6 7373788 7373788 C A CAGE1 Nonsense_Mutation p.E422* 0.14 TCGA-S7-A7WR-01 11 533875 533875 G T HRAS Missense_Mutation p.Q61K 0.33 deleterious(0.02) benign(0.046) TCGA-S7-A7WR-01 1 201195003 201195003 C T IGFN1 Missense_Mutation p.T3513M 0.38 probably_damaging(0.969) TCGA-S7-A7WR-01 5 61668287 61668287 C T KIF2A Missense_Mutation p.P557S 0.16 tolerated(0.05) possibly_damaging(0.836) TCGA-S7-A7WR-01 6 38841074 38841074 C T DNAH8 Silent p.V2297V 0.05 TCGA-S7-A7WT-01 11 13441043 13441043 G C BTBD10 Missense_Mutation p.S183C 0.06 deleterious(0) possibly_damaging(0.547) TCGA-S7-A7WT-01 11 64597091 64597091 G A CDC42BPG Silent p.R1273R 0.17 TCGA-S7-A7WT-01 12 112223106 112223106 C A ALDH2 Silent p.V132V 0.16 TCGA-S7-A7WT-01 14 106963220 106963220 A C IGHV1-45 Missense_Mutation p.M21R 0.14 deleterious(0) benign(0.018) TCGA-S7-A7WT-01 16 1723958 1723958 A G CRAMP1L Missense_Mutation p.Q1241R 0.13 deleterious(0) probably_damaging(0.998) TCGA-S7-A7WT-01 16 4920308 4920308 T G UBN1 Missense_Mutation p.L426R 0.13 deleterious(0) possibly_damaging(0.588) TCGA-S7-A7WT-01 17 25932726 25932726 C T KSR1 Silent p.D512D 0.33 TCGA-S7-A7WT-01 19 58983066 58983066 G A ZNF324 Missense_Mutation p.G403S 0.05 deleterious(0.01) possibly_damaging(0.679) TCGA-S7-A7WT-01 1 115272878 115272878 C T CSDE1 Splice_Site p.X498_splice 0.11 TCGA-S7-A7WT-01 1 155340331 155340340 TTGATGAATC - ASH1L Frame_Shift_Del p.R2214Pfs*70 0.09 TCGA-S7-A7WT-01 1 160920865 160920865 A T ITLN2 Missense_Mutation p.S137T 0.12 tolerated(0.3) benign(0.361) TCGA-S7-A7WT-01 20 30732974 30732974 G T TM9SF4 Nonsense_Mutation p.E245* 0.13 TCGA-S7-A7WT-01 2 113940295 113940295 C G PSD4 Missense_Mutation p.Q88E 0.11 tolerated_low_confidence(0.54) benign(0) TCGA-S7-A7WT-01 2 179418227 179418227 A T TTN Splice_Site p.X29835_splice 0.13 TCGA-S7-A7WT-01 2 188211041 188211041 G A CALCRL Missense_Mutation p.A419V 0.11 tolerated(0.07) benign(0.002) TCGA-S7-A7WT-01 2 202606482 202606482 A G ALS2 Silent p.L756L 0.10 TCGA-S7-A7WT-01 3 32995645 32995659 TCTTTGCCGTGGTGG - CCR4 In_Frame_Del p.F245_V249del 0.62 TCGA-S7-A7WT-01 5 112176079 112176079 G C APC Missense_Mutation p.Q1596H 0.18 possibly_damaging(0.845) TCGA-S7-A7WT-01 6 30680011 30680011 C T MDC1 Missense_Mutation p.A570T 0.10 deleterious(0.04) benign(0.014) TCGA-S7-A7WT-01 6 56504748 56504748 G A DST Silent p.L329L 0.17 TCGA-S7-A7WT-01 7 150768535 150768535 G A SLC4A2 Silent p.T678T 0.28 TCGA-S7-A7WT-01 X 15267054 15267054 G A ASB9 Missense_Mutation p.A191V 0.34 deleterious(0.05) possibly_damaging(0.479) TCGA-S7-A7WU-01 1 215823955 215823955 G A USH2A Silent p.S4774S 0.39 TCGA-S7-A7WU-01 2 242815470 242815470 G C CXXC11 3'UTR 0.09 TCGA-S7-A7WU-01 2 26203255 26203255 G A KIF3C Missense_Mutation p.A511V 0.12 benign(0.062) TCGA-S7-A7WU-01 3 172642091 172642091 G A SPATA16 Silent p.F415F 0.11 TCGA-S7-A7WU-01 6 30633377 30633377 C T DHX16 Missense_Mutation p.R267Q 0.06 tolerated(0.39) unknown(0) TCGA-S7-A7WV-01 10 70733319 70733319 C T DDX21 Missense_Mutation p.H523Y 0.09 deleterious(0.02) probably_damaging(0.967) TCGA-S7-A7WV-01 16 20796355 20796355 A T ACSM3 Missense_Mutation p.T357S 0.10 tolerated(0.4) benign(0.003) TCGA-S7-A7WV-01 17 41958169 41958169 G A MPP2 Missense_Mutation p.P347L 0.06 deleterious(0) probably_damaging(0.999) TCGA-S7-A7WV-01 20 257757 257757 G C C20orf96 Silent p.R251R 0.04 TCGA-S7-A7WV-01 3 10311971 10311971 A G TATDN2 Missense_Mutation p.M369V 0.04 deleterious(0.03) benign(0.358) TCGA-S7-A7WV-01 7 151864310 151864310 C T KMT2C Missense_Mutation p.R3224H 0.05 probably_damaging(0.999) TCGA-S7-A7WW-01 12 43886328 43886328 G A ADAMTS20 Silent p.D352D 0.23 TCGA-S7-A7WW-01 12 49169216 49169216 G A ADCY6 Missense_Mutation p.A617V 0.08 tolerated(0.14) benign(0.077) TCGA-S7-A7WW-01 12 53241882 53241882 G T KRT78 Missense_Mutation p.N136K 0.30 deleterious(0) probably_damaging(1) TCGA-S7-A7WW-01 15 64005579 64005579 G A HERC1 Missense_Mutation p.A1479V 0.05 benign(0.011) TCGA-S7-A7WW-01 1 154961060 154961060 A G FLAD1 Silent p.L284L 0.23 TCGA-S7-A7WW-01 1 91180275 91180275 G A BARHL2 Missense_Mutation p.R222C 0.13 deleterious(0) unknown(0) TCGA-S7-A7WW-01 2 65296543 65296543 T C CEP68 5'UTR 0.06 TCGA-S7-A7WW-01 4 76787341 76787341 C T PPEF2 Splice_Site p.X640_splice 0.36 TCGA-S7-A7WW-01 5 128301920 128301920 C A SLC27A6 Missense_Mutation p.D30E 0.09 deleterious(0.02) possibly_damaging(0.589) TCGA-S7-A7WW-01 7 4876138 4876138 G A RADIL Missense_Mutation p.R212C 0.14 tolerated(0.1) possibly_damaging(0.809) TCGA-S7-A7WW-01 8 15977990 15977990 C T MSR1 Missense_Mutation p.V387I 0.04 tolerated(0.37) benign(0.03) TCGA-S7-A7WX-01 11 12243220 12243220 C T MICAL2 Silent p.A412A 0.06 TCGA-S7-A7WX-01 17 34894046 34894046 C T PIGW Nonsense_Mutation p.R366* 0.42 TCGA-S7-A7WX-01 1 16946323 16946323 C T RP5-1182A14.5 3'Flank 0.38 TCGA-S7-A7WX-01 1 39977465 39977465 C T BMP8A Nonsense_Mutation p.R188* 0.18 TCGA-S7-A7WX-01 20 60886280 60886280 C T LAMA5 Silent p.Q3342Q 0.29 TCGA-S7-A7WX-01 3 152554691 152554691 T A P2RY1 Nonstop_Mutation p.*374Rext*31 0.22 TCGA-S7-A7WX-01 6 42689799 42689799 C T PRPH2 Missense_Mutation p.A92T 0.24 tolerated(0.57) benign(0.008) TCGA-S7-A7WX-01 7 119914730 119914730 C T KCND2 Missense_Mutation p.A15V 0.05 deleterious(0) probably_damaging(0.963) TCGA-S7-A7WX-01 X 72433372 72433372 G C NAP1L2 Silent p.P319P 0.08 TCGA-S7-A7X0-01 12 109200167 109200167 G A SSH1 Silent p.P245P 0.39 TCGA-S7-A7X0-01 14 106926411 106926411 G A IGHV3-43 Missense_Mutation p.S44F 0.04 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-S7-A7X0-01 14 75508331 75508331 G A MLH3 Missense_Mutation p.A1151V 0.09 tolerated(0.64) benign(0.021) TCGA-S7-A7X0-01 16 31273075 31273075 G A ITGAM Missense_Mutation p.A31T 0.30 tolerated(0.05) probably_damaging(0.932) TCGA-S7-A7X0-01 17 42476155 42476155 A C GPATCH8 Missense_Mutation p.I1097S 0.07 deleterious(0) unknown(0) TCGA-S7-A7X0-01 19 10799870 10799870 C T ILF3 Missense_Mutation p.S860L 0.07 deleterious_low_confidence(0.01) unknown(0) TCGA-S7-A7X0-01 19 1391008 1391008 G A NDUFS7 Missense_Mutation p.A123T 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-S7-A7X0-01 19 15508364 15508364 G A AKAP8L Missense_Mutation p.H458Y 0.06 tolerated(0.07) benign(0.002) TCGA-S7-A7X0-01 19 49142648 49142648 A G CA11 Missense_Mutation p.Y237H 0.10 deleterious(0) benign(0.383) TCGA-S7-A7X0-01 1 22157966 22157966 G A HSPG2 Silent p.S3814S 0.14 TCGA-S7-A7X0-01 1 248202447 248202447 A G OR2L2 Missense_Mutation p.N293S 0.05 deleterious(0.01) possibly_damaging(0.899) TCGA-S7-A7X0-01 20 44170763 44170763 T C EPPIN Intron 0.13 TCGA-S7-A7X0-01 22 37872933 37872933 C T MFNG Splice_Site p.X216_splice 0.08 TCGA-S7-A7X0-01 22 46704404 46704404 C T GTSE1 Missense_Mutation p.A109V 0.09 deleterious(0) probably_damaging(1) TCGA-S7-A7X0-01 2 46607402 46607402 C G EPAS1 Missense_Mutation p.P531A 0.30 deleterious(0) probably_damaging(1) TCGA-S7-A7X0-01 3 49693162 49693162 T G BSN Missense_Mutation p.M2058R 0.12 unknown(0) TCGA-S7-A7X0-01 4 37590515 37590515 T A C4orf19 Missense_Mutation p.I9K 0.11 deleterious(0) probably_damaging(0.948) TCGA-S7-A7X0-01 5 133895558 133895558 C T JADE2 Missense_Mutation p.S117F 0.39 tolerated(0.1) benign(0.369) TCGA-S7-A7X0-01 5 13793658 13793658 C T DNAH5 Silent p.T2730T 0.09 TCGA-S7-A7X0-01 7 2968246 2968246 G A CARD11 Silent p.D580D 0.07 TCGA-S7-A7X0-01 X 106960089 106960089 C T TSC22D3 Intron 0.12 TCGA-S7-A7X1-01 10 24762772 24762772 G A KIAA1217 Missense_Mutation p.A488T 0.33 tolerated(0.37) benign(0.032) TCGA-S7-A7X1-01 11 6478231 6478231 C T TRIM3 Missense_Mutation p.R242H 0.08 tolerated(0.3) possibly_damaging(0.466) TCGA-S7-A7X1-01 19 9069495 9069495 G T MUC16 Missense_Mutation p.P5984Q 0.37 unknown(0) TCGA-S7-A7X1-01 4 100126142 100126142 G A ADH6 Missense_Mutation p.T348I 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-S7-A7X1-01 4 100126143 100126143 T G ADH6 Missense_Mutation p.T348P 0.32 deleterious(0) probably_damaging(0.999) TCGA-S7-A7X1-01 4 152682119 152682119 G A PET112 Silent p.L6L 0.12 TCGA-S7-A7X1-01 7 82580363 82580363 C G PCLO Missense_Mutation p.V3181L 0.23 unknown(0) TCGA-S7-A7X1-01 8 87679266 87679266 C T CNGB3 Missense_Mutation p.A247T 0.09 deleterious(0) benign(0.007) TCGA-S7-A7X2-01 11 22396360 22396360 A G SLC17A6 Silent p.G367G 0.27 TCGA-S7-A7X2-01 12 124343737 124343737 G A DNAH10 Missense_Mutation p.R2106H 0.12 probably_damaging(0.998) TCGA-S7-A7X2-01 12 57589943 57589943 C T LRP1 Silent p.N2925N 0.28 TCGA-S7-A7X2-01 12 7086308 7086308 T G LPCAT3 Nonstop_Mutation p.*488Yext*98 0.28 TCGA-S7-A7X2-01 16 27374978 27374978 G T IL4R Missense_Mutation p.V769F 0.29 tolerated(0.08) benign(0.293) TCGA-S7-A7X2-01 17 26671480 26671492 GCCACAAGCCGTA - TNFAIP1 Frame_Shift_Del p.T270Afs*78 0.32 TCGA-S7-A7X2-01 17 4535050 4535050 C A ALOX15 Nonsense_Mutation p.E612* 0.07 TCGA-S7-A7X2-01 19 35719389 35719389 G C FAM187B Missense_Mutation p.S65R 0.25 tolerated(0.51) benign(0.008) TCGA-S7-A7X2-01 19 53854724 53854724 A G ZNF845 Missense_Mutation p.T266A 0.29 deleterious(0) benign(0.255) TCGA-S7-A7X2-01 1 203316735 203316735 G A FMOD Missense_Mutation p.L222F 0.21 deleterious(0.03) possibly_damaging(0.889) TCGA-S7-A7X2-01 3 47676716 47676716 T C SMARCC1 Silent p.A870A 0.32 TCGA-S7-A7X2-01 4 2129863 2129863 T C POLN Silent p.V653V 0.18 TCGA-S7-A7X2-01 4 65188460 65188460 A G TECRL Missense_Mutation p.S128P 0.05 deleterious(0.02) probably_damaging(0.981) TCGA-S7-A7X2-01 6 25966899 25966899 A C TRIM38 Missense_Mutation p.K50T 0.06 tolerated(0.45) benign(0.006) TCGA-S7-A7X2-01 7 150713794 150713794 C A ATG9B Missense_Mutation p.R801L 0.19 deleterious(0.02) possibly_damaging(0.551) TCGA-S7-A7X2-01 7 77256458 77256458 G A PTPN12 Missense_Mutation p.G488S 0.06 tolerated_low_confidence(0.78) benign(0.022) TCGA-S7-A7X2-01 8 42045067 42045067 C G PLAT Missense_Mutation p.D130H 0.29 tolerated(0.06) probably_damaging(0.948) TCGA-S7-A7X2-01 8 42045068 42045068 C T PLAT Silent p.E129E 0.29 TCGA-S7-A7X2-01 X 24761358 24761358 T C POLA1 Silent p.D820D 0.09 TCGA-SA-A6C2-01 11 66616357 66616357 G C PC 3'UTR 0.09 TCGA-SA-A6C2-01 12 66923631 66923631 G A GRIP1 Missense_Mutation p.T161I 0.10 deleterious(0) benign(0.362) TCGA-SA-A6C2-01 14 24769272 24769272 C - NOP9 Frame_Shift_Del p.Q38Nfs*20 0.13 TCGA-SA-A6C2-01 14 62542092 62542093 - C SYT16 Frame_Shift_Ins p.M327Hfs*27 0.34 TCGA-SA-A6C2-01 14 64936274 64936274 T G AKAP5 Missense_Mutation p.Y388D 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-SA-A6C2-01 17 15554470 15554470 C G RP11-385D13.1 Missense_Mutation p.D152H 0.07 deleterious_low_confidence(0) possibly_damaging(0.622) TCGA-SA-A6C2-01 17 58303433 58303433 T C USP32 Missense_Mutation p.T467A 0.37 tolerated(0.18) benign(0.031) TCGA-SA-A6C2-01 17 73914285 73914285 T G FBF1 Missense_Mutation p.D720A 0.23 deleterious(0) probably_damaging(0.998) TCGA-SA-A6C2-01 17 74621461 74621461 A G ST6GALNAC1 Missense_Mutation p.I585T 0.43 probably_damaging(0.995) TCGA-SA-A6C2-01 19 55349211 55349211 A G KIR2DS4 Missense_Mutation p.N84S 0.03 tolerated_low_confidence(0.21) benign(0.166) TCGA-SA-A6C2-01 19 9213131 9213131 C T OR7G2 Silent p.V284V 0.06 TCGA-SA-A6C2-01 1 16558644 16558644 C G RSG1 Missense_Mutation p.D226H 0.12 tolerated(0.06) benign(0.086) TCGA-SA-A6C2-01 1 204587841 204587841 C T LRRN2 Missense_Mutation p.R427Q 0.35 tolerated(0.2) benign(0.021) TCGA-SA-A6C2-01 1 33612992 33612992 G A TRIM62 Missense_Mutation p.T405M 0.53 deleterious(0) probably_damaging(0.998) TCGA-SA-A6C2-01 20 3146605 3146605 C T LZTS3 Silent p.S287S 0.27 TCGA-SA-A6C2-01 22 37769955 37769955 C G ELFN2 Missense_Mutation p.E540D 0.07 deleterious(0) probably_damaging(0.998) TCGA-SA-A6C2-01 2 136564700 136564700 G A LCT Nonsense_Mutation p.Q1391* 0.51 TCGA-SA-A6C2-01 2 176973665 176973665 G A HOXD11 Missense_Mutation p.C271Y 0.06 deleterious(0) probably_damaging(1) TCGA-SA-A6C2-01 2 21229684 21229684 G T APOB Silent p.T3352T 0.39 TCGA-SA-A6C2-01 3 53766101 53766101 A G CACNA1D Missense_Mutation p.D842G 0.06 tolerated(0.12) benign(0.079) TCGA-SA-A6C2-01 5 36049138 36049138 G A UGT3A2 Silent p.G232G 0.42 TCGA-SA-A6C2-01 5 54674238 54674238 T G SKIV2L2 Missense_Mutation p.L636W 0.09 deleterious(0) probably_damaging(0.971) TCGA-SA-A6C2-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.30 deleterious(0.05) probably_damaging(0.992) TCGA-SA-A6C2-01 8 145773409 145773409 C T ARHGAP39 Missense_Mutation p.R354Q 0.50 tolerated(0.41) benign(0.131) TCGA-SA-A6C2-01 8 41792302 41792302 A G KAT6A Silent p.L1146L 0.16 TCGA-SA-A6C2-01 8 86389491 86389491 T A CA2 Missense_Mutation p.V217D 0.42 deleterious(0) probably_damaging(0.996) TCGA-SA-A6C2-01 8 95479758 95479758 A T RAD54B Missense_Mutation p.S4T 0.39 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-SA-A6C2-01 9 19446412 19446412 A - ACER2 Frame_Shift_Del p.M213Cfs*93 0.10 TCGA-SA-A6C2-01 X 48049618 48049618 C A SSX5 Silent p.L180L 0.05 TCGA-SP-A6QC-01 12 121768513 121768513 G A ANAPC5 Intron 0.41 TCGA-SP-A6QC-01 12 30792609 30792609 C T IPO8 Missense_Mutation p.E777K 0.17 deleterious(0) probably_damaging(0.98) TCGA-SP-A6QC-01 17 7240043 7240043 G A ACAP1 5'UTR 0.13 TCGA-SP-A6QC-01 17 79862805 79862805 C T PCYT2 Silent p.A376A 0.09 TCGA-SP-A6QC-01 1 152759824 152759824 A C LCE1E Missense_Mutation p.T17P 0.43 tolerated_low_confidence(0.07) unknown(0) TCGA-SP-A6QC-01 1 223438145 223438145 A C SUSD4 Missense_Mutation p.L184R 0.40 tolerated(0.1) benign(0.41) TCGA-SP-A6QC-01 1 223438146 223438146 G T SUSD4 Missense_Mutation p.L184I 0.42 tolerated(0.09) probably_damaging(0.955) TCGA-SP-A6QC-01 1 224340859 224340859 T C FBXO28 Missense_Mutation p.Y178H 0.52 deleterious(0.03) probably_damaging(0.991) TCGA-SP-A6QC-01 22 20073282 20073282 T G DGCR8 5'UTR 0.29 TCGA-SP-A6QC-01 2 171710489 171710489 G A GAD1 Missense_Mutation p.R457H 0.08 deleterious(0) probably_damaging(1) TCGA-SP-A6QC-01 2 37041349 37041349 G A VIT Missense_Mutation p.V643I 0.20 tolerated(0.72) benign(0.032) TCGA-SP-A6QC-01 5 32058106 32058106 G C PDZD2 Silent p.G699G 0.24 TCGA-SP-A6QC-01 9 131285068 131285068 A T GLE1 Missense_Mutation p.Q185L 0.06 deleterious(0) possibly_damaging(0.493) TCGA-SP-A6QD-01 11 55890333 55890333 C T OR8H3 Missense_Mutation p.S162F 0.28 tolerated(1) benign(0.001) TCGA-SP-A6QD-01 1 13910449 13910449 G C PDPN Missense_Mutation p.W50S 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.904) TCGA-SP-A6QD-01 3 52406913 52406913 C T DNAH1 Missense_Mutation p.R2277W 0.28 possibly_damaging(0.874) TCGA-SP-A6QD-01 5 137518596 137518596 G A KIF20A Missense_Mutation p.R250Q 0.07 tolerated(0.42) benign(0.052) TCGA-SP-A6QD-01 5 176798390 176798390 G A RGS14 Missense_Mutation p.R459H 0.07 tolerated(0.22) benign(0.001) TCGA-SP-A6QD-01 6 110036319 110036319 A G FIG4 Silent p.K35K 0.43 TCGA-SP-A6QD-01 6 83075102 83075102 C - TPBG Frame_Shift_Del p.S143Afs*36 0.34 TCGA-SP-A6QF-01 11 533875 533875 G T HRAS Missense_Mutation p.Q61K 0.39 deleterious(0.02) benign(0.046) TCGA-SP-A6QF-01 11 73760452 73760452 G C C2CD3 Missense_Mutation p.P1764R 0.10 deleterious(0) probably_damaging(1) TCGA-SP-A6QF-01 12 105433512 105433512 A G ALDH1L2 Missense_Mutation p.I675T 0.17 tolerated(0.13) benign(0.019) TCGA-SP-A6QF-01 12 12022421 12022421 T C ETV6 Missense_Mutation p.I176T 0.05 deleterious(0) possibly_damaging(0.786) TCGA-SP-A6QF-01 14 24738839 24738839 C A RABGGTA Missense_Mutation p.E163D 0.05 deleterious(0.03) probably_damaging(0.998) TCGA-SP-A6QF-01 14 65260383 65260383 G C SPTB Silent p.G666G 0.07 TCGA-SP-A6QF-01 15 81224299 81224299 C T KIAA1199 Silent p.S904S 0.12 TCGA-SP-A6QF-01 16 53476671 53476671 T - RBL2 Frame_Shift_Del p.S159Lfs*3 0.20 TCGA-SP-A6QF-01 19 52130952 52130952 G A SIGLEC5 Silent p.L349L 0.36 TCGA-SP-A6QF-01 1 172557937 172557937 C T SUCO Missense_Mutation p.P566S 0.16 tolerated(0.5) benign(0.001) TCGA-SP-A6QF-01 1 226026489 226026489 C G EPHX1 Missense_Mutation p.P167A 0.06 deleterious(0.02) possibly_damaging(0.476) TCGA-SP-A6QF-01 1 226334298 226334298 T C ACBD3 3'UTR 0.09 TCGA-SP-A6QF-01 1 230914848 230914848 C G CAPN9 Silent p.G361G 0.17 TCGA-SP-A6QF-01 2 54587376 54587376 G A C2orf73 Missense_Mutation p.G181S 0.33 tolerated(0.47) possibly_damaging(0.63) TCGA-SP-A6QF-01 3 50369084 50369084 T A RASSF1 Silent p.A226A 0.29 TCGA-SP-A6QF-01 5 13735426 13735426 C T DNAH5 Missense_Mutation p.V3859I 0.15 benign(0.097) TCGA-SP-A6QF-01 6 106975253 106975253 G T AIM1 Missense_Mutation p.G1088C 0.07 tolerated(0.06) probably_damaging(0.937) TCGA-SP-A6QF-01 8 67971510 67971510 G C COPS5 Missense_Mutation p.T105S 0.05 deleterious(0) probably_damaging(0.997) TCGA-SP-A6QF-01 9 101798452 101798452 G A COL15A1 Missense_Mutation p.G764S 0.10 tolerated(0.06) possibly_damaging(0.52) TCGA-SP-A6QG-01 10 46961886 46961886 C T SYT15 3'Flank 0.11 TCGA-SP-A6QG-01 12 57643383 57643383 A G STAC3 Missense_Mutation p.S13P 0.07 tolerated(1) benign(0) TCGA-SP-A6QG-01 20 8770823 8770823 T C PLCB1 Missense_Mutation p.L1113P 0.16 deleterious(0) probably_damaging(0.988) TCGA-SP-A6QG-01 4 148653479 148653479 C T ARHGAP10 Silent p.S9S 0.09 TCGA-SP-A6QG-01 5 140737040 140737040 C T PCDHGA4 Missense_Mutation p.S758F 0.09 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-SP-A6QG-01 8 100479757 100479757 C T VPS13B Silent p.V1187V 0.19 TCGA-SP-A6QG-01 8 16962937 16962937 C G MICU3 Silent p.L367L 0.11 TCGA-SP-A6QG-01 X 100297190 100297190 G A TRMT2B Missense_Mutation p.P30L 0.29 deleterious(0) benign(0.274) TCGA-SP-A6QH-01 12 101880259 101880259 C A SPIC Missense_Mutation p.L153I 0.08 deleterious(0.04) probably_damaging(0.99) TCGA-SP-A6QH-01 12 121670284 121670284 C T P2RX4 Missense_Mutation p.R334C 0.11 deleterious(0.01) probably_damaging(0.916) TCGA-SP-A6QH-01 15 102303145 102303145 G A DNM1P47 RNA 0.44 TCGA-SP-A6QH-01 17 32956104 32956104 C T TMEM132E Missense_Mutation p.R317W 0.11 deleterious(0) probably_damaging(0.982) TCGA-SP-A6QH-01 1 200878465 200878465 G A C1orf106 Missense_Mutation p.R300H 0.11 tolerated(0.21) benign(0.017) TCGA-SP-A6QH-01 22 38049870 38049870 G T SH3BP1 Missense_Mutation p.M561I 0.12 tolerated(0.16) benign(0.006) TCGA-SP-A6QH-01 2 114355097 114355097 C T WASH2P RNA 0.14 TCGA-SP-A6QH-01 2 8822538 8822538 G A ID2 Silent p.S81S 0.05 TCGA-SP-A6QH-01 3 167031891 167031891 C A ZBBX Missense_Mutation p.D430Y 0.17 deleterious(0) possibly_damaging(0.893) TCGA-SP-A6QH-01 5 140763352 140763352 T C PCDHGA7 Missense_Mutation p.S296P 0.20 tolerated_low_confidence(0.07) benign(0.072) TCGA-SP-A6QH-01 7 105738244 105738244 T C SYPL1 Silent p.Q116Q 0.19 TCGA-SP-A6QH-01 X 100808105 100808105 A G ARMCX1 Silent p.A64A 0.14 TCGA-SP-A6QH-01 X 101911811 101911811 G C GPRASP1 Silent p.G990G 0.07 TCGA-SP-A6QI-01 12 116413346 116413346 G A MED13L Silent p.C1854C 0.06 TCGA-SP-A6QI-01 15 65678300 65678300 C G IGDCC4 Missense_Mutation p.E1017Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-SP-A6QI-01 19 3600626 3600626 G A TBXA2R Missense_Mutation p.P3S 0.15 tolerated_low_confidence(0.14) benign(0.015) TCGA-SP-A6QI-01 1 183933121 183933121 T C COLGALT2 Missense_Mutation p.Y289C 0.23 deleterious(0) probably_damaging(0.968) TCGA-SP-A6QI-01 1 28282678 28282678 C A SMPDL3B Intron 0.19 TCGA-SP-A6QI-01 2 27355237 27355237 G A PREB Nonsense_Mutation p.R263* 0.15 TCGA-SP-A6QI-01 6 151790032 151790032 G A C6orf211 Silent p.R371R 0.22 TCGA-SP-A6QJ-01 11 129817348 129817348 G A PRDM10 Intron 0.14 TCGA-SP-A6QJ-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.44 tolerated(0.07) benign(0.069) TCGA-SP-A6QJ-01 11 62294307 62294307 G A AHNAK Missense_Mutation p.P2528S 0.04 possibly_damaging(0.803) TCGA-SP-A6QJ-01 12 48723377 48723377 G T H1FNT Missense_Mutation p.R101S 0.53 tolerated(0.07) possibly_damaging(0.765) TCGA-SP-A6QJ-01 13 21746483 21746483 T G SKA3 Missense_Mutation p.N109T 0.39 deleterious(0.04) benign(0.081) TCGA-SP-A6QJ-01 14 22192478 22192478 G A TRAV3 Missense_Mutation p.E85K 0.34 tolerated(0.09) benign(0.013) TCGA-SP-A6QJ-01 19 42231224 42231224 T G CEACAM5 Silent p.V699V 0.05 TCGA-SP-A6QJ-01 1 150814926 150814930 GCTCT - ARNT Frame_Shift_Del p.Q81Lfs*4 0.36 TCGA-SP-A6QJ-01 3 58104625 58104625 C - FLNB Frame_Shift_Del p.Y924* 0.27 TCGA-SP-A6QJ-01 4 95376476 95376476 C T PDLIM5 Missense_Mutation p.P13S 0.30 deleterious(0) probably_damaging(0.995) TCGA-SP-A6QJ-01 5 129520747 129520747 A G CHSY3 Missense_Mutation p.M638V 0.10 deleterious(0) possibly_damaging(0.897) TCGA-SP-A6QJ-01 X 49062200 49062200 G A CACNA1F Missense_Mutation p.A1860V 0.54 tolerated(0.26) benign(0) TCGA-SP-A6QJ-01 X 53602646 53602646 C A HUWE1 Missense_Mutation p.R1996L 0.40 benign(0.227) TCGA-SP-A6QK-01 10 43607567 43607567 T A RET Missense_Mutation p.C515S 0.35 tolerated(0.32) probably_damaging(0.985) TCGA-SP-A6QK-01 10 43609948 43609948 T C RET Missense_Mutation p.C634R 0.29 deleterious(0) benign(0.309) TCGA-SP-A6QK-01 14 22315304 22315304 G A TRAV8-2 Missense_Mutation p.G81D 0.14 deleterious(0.03) possibly_damaging(0.838) TCGA-SP-A6QK-01 16 2732747 2732747 G A KCTD5 Silent p.P66P 0.32 TCGA-SP-A6QK-01 19 51532478 51532478 G A KLK12 Intron 0.35 TCGA-SP-A6QK-01 19 51534095 51534095 G A KLK12 Silent p.I180I 0.31 TCGA-SP-A6QK-01 1 53732212 53732212 C T LRP8 Missense_Mutation p.A454T 0.06 deleterious(0) possibly_damaging(0.507) TCGA-SP-A6QK-01 4 122774228 122774228 A G BBS7 Silent p.I244I 0.24 TCGA-SP-A6QK-01 4 187527280 187527280 C T FAT1 Missense_Mutation p.D3432N 0.08 possibly_damaging(0.734) TCGA-SP-A6QK-01 9 113242030 113242030 C T SVEP1 Missense_Mutation p.R791H 0.27 probably_damaging(0.999) TCGA-SP-A6QK-01 9 95609713 95609713 T - ZNF484 Frame_Shift_Del p.K454Nfs*116 0.18 TCGA-SP-A6QK-01 X 117892071 117892071 A G IL13RA1 Missense_Mutation p.Q181R 0.20 tolerated(0.16) benign(0.064) TCGA-SQ-A6I4-01 11 44640634 44640634 G A CD82 Silent p.R254R 0.09 TCGA-SQ-A6I4-01 14 77275462 77275462 T C ANGEL1 Missense_Mutation p.I197V 0.17 tolerated(0.63) benign(0) TCGA-SQ-A6I4-01 15 66727443 66727457 TCTTACCCAGAAGCA - MAP2K1 In_Frame_Del p.F53_Q58delinsL 0.18 TCGA-SQ-A6I4-01 15 74336715 74336715 C G PML Missense_Mutation p.P672R 0.29 deleterious(0) probably_damaging(1) TCGA-SQ-A6I4-01 16 72094218 72094218 T C HP Missense_Mutation p.I217T 0.16 tolerated(0.05) possibly_damaging(0.507) TCGA-SQ-A6I4-01 2 46986916 46986916 C A SOCS5 Missense_Mutation p.S416Y 0.27 deleterious(0) probably_damaging(1) TCGA-SQ-A6I6-01 10 60553271 60553271 G C BICC1 Missense_Mutation p.D359H 0.04 deleterious(0) probably_damaging(0.999) TCGA-SQ-A6I6-01 11 102567138 102567138 G T MMP27 Missense_Mutation p.T289K 0.44 deleterious(0) probably_damaging(1) TCGA-SQ-A6I6-01 15 89804896 89804896 T A FANCI Missense_Mutation p.N123K 0.35 deleterious(0.03) benign(0.055) TCGA-SQ-A6I6-01 16 819596 819596 C T MSLNL Silent p.A998A 0.07 TCGA-SQ-A6I6-01 16 89261332 89261332 C T CDH15 Silent p.D738D 0.29 TCGA-SQ-A6I6-01 17 29556251 29556252 - T NF1 Frame_Shift_Ins p.K874* 0.41 TCGA-SQ-A6I6-01 17 46051813 46051813 A C CDK5RAP3 Missense_Mutation p.L111F 0.32 deleterious(0) probably_damaging(1) TCGA-SQ-A6I6-01 19 45885941 45885941 G A PPP1R13L Silent p.Y764Y 0.46 TCGA-SQ-A6I6-01 19 49840216 49840216 G A CD37 Missense_Mutation p.G65R 0.05 deleterious(0) probably_damaging(1) TCGA-SQ-A6I6-01 1 205070793 205070793 G C RBBP5 Missense_Mutation p.F189L 0.45 deleterious(0.03) benign(0.03) TCGA-SQ-A6I6-01 22 25243680 25243680 C G SGSM1 Silent p.L73L 0.82 TCGA-SQ-A6I6-01 22 36424377 36424377 G A RBFOX2 Missense_Mutation p.P33S 0.17 benign(0.005) TCGA-SQ-A6I6-01 2 223163294 223163294 G A PAX3 Missense_Mutation p.P14L 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.56) TCGA-SQ-A6I6-01 2 42990174 42990174 G A OXER1 Silent p.D382D 0.36 TCGA-SQ-A6I6-01 4 77969505 77969505 T C CCNI Missense_Mutation p.Y334C 0.36 deleterious(0) probably_damaging(0.94) TCGA-SQ-A6I6-01 5 131534588 131534588 T C P4HA2 Missense_Mutation p.H430R 0.04 deleterious(0) probably_damaging(0.999) TCGA-SQ-A6I6-01 5 60240835 60240835 T C ERCC8 Translation_Start_Site p.M1? 0.05 deleterious(0) benign(0.437) TCGA-SQ-A6I6-01 8 124195302 124195302 A G FAM83A Missense_Mutation p.Q69R 0.36 tolerated(0.14) benign(0.075) TCGA-SR-A6MP-01 11 3723762 3723762 T C NUP98 Missense_Mutation p.E1148G 0.08 tolerated(0.09) possibly_damaging(0.705) TCGA-SR-A6MP-01 15 86198964 86198964 A G AKAP13 Missense_Mutation p.H1564R 0.46 deleterious(0) probably_damaging(0.999) TCGA-SR-A6MP-01 17 37822068 37822068 G A TCAP Silent p.R70R 0.57 TCGA-SR-A6MP-01 17 37822170 37822170 G A TCAP Silent p.E104E 0.21 TCGA-SR-A6MP-01 17 37822179 37822179 G C TCAP Missense_Mutation p.E107D 0.20 tolerated(0.44) possibly_damaging(0.631) TCGA-SR-A6MP-01 17 37822231 37822231 G A TCAP Missense_Mutation p.G125S 0.28 deleterious(0) probably_damaging(1) TCGA-SR-A6MP-01 17 45012514 45012514 G A GOSR2 Silent p.R152R 0.42 TCGA-SR-A6MP-01 1 21226240 21226240 G A EIF4G3 Missense_Mutation p.S600L 0.12 tolerated_low_confidence(0.07) benign(0.002) TCGA-SR-A6MP-01 1 63042971 63042971 C G DOCK7 Missense_Mutation p.E692Q 0.44 deleterious(0) probably_damaging(0.98) TCGA-SR-A6MP-01 1 94884143 94884143 G A ABCD3 Missense_Mutation p.G37S 0.14 tolerated(0.96) benign(0.001) TCGA-SR-A6MP-01 20 31622624 31622624 C T BPIFB6 Missense_Mutation p.R120W 0.38 deleterious(0.02) benign(0.01) TCGA-SR-A6MP-01 3 119962585 119962585 T A GPR156 Missense_Mutation p.L45F 0.74 tolerated(0.65) possibly_damaging(0.894) TCGA-SR-A6MP-01 4 101439122 101439122 C T EMCN 5'UTR 0.31 TCGA-SR-A6MP-01 4 1918661 1918661 G T WHSC1 Missense_Mutation p.W275L 0.12 deleterious(0) possibly_damaging(0.876) TCGA-SR-A6MP-01 5 169025544 169025544 A G SPDL1 Missense_Mutation p.Y366C 0.47 deleterious(0) probably_damaging(0.968) TCGA-SR-A6MP-01 8 10467864 10467864 C A RP1L1 Silent p.G1248G 0.34 TCGA-SR-A6MP-01 8 10467982 10467982 C T RP1L1 Missense_Mutation p.G1209D 0.32 probably_damaging(0.988) TCGA-SR-A6MP-01 8 144886884 144886884 G A SCRIB Missense_Mutation p.P955S 0.52 benign(0.01) TCGA-SR-A6MP-01 8 144888620 144888620 G C SCRIB Missense_Mutation p.P768R 0.46 probably_damaging(0.951) TCGA-SR-A6MP-01 8 144890795 144890795 G A SCRIB Missense_Mutation p.S700F 0.56 possibly_damaging(0.652) TCGA-SR-A6MP-01 8 144891006 144891006 G A SCRIB Nonsense_Mutation p.Q630* 0.38 TCGA-SR-A6MP-01 8 144891186 144891186 G A SCRIB Missense_Mutation p.H570Y 0.51 possibly_damaging(0.72) TCGA-SR-A6MP-01 8 144892898 144892898 G A SCRIB Silent p.P454P 0.46 TCGA-SR-A6MP-01 8 144895142 144895142 G C SCRIB Intron 0.53 TCGA-SR-A6MP-01 8 144895531 144895531 G C SCRIB Missense_Mutation p.L173V 0.34 probably_damaging(0.999) TCGA-SR-A6MP-01 8 27918013 27918013 G A NUGGC Missense_Mutation p.R343W 0.47 deleterious(0.02) probably_damaging(0.997) TCGA-SR-A6MQ-01 11 534286 534286 C G HRAS Missense_Mutation p.G13R 0.30 deleterious(0) probably_damaging(0.992) TCGA-SR-A6MQ-01 12 99117515 99117515 A G APAF1 Silent p.S1101S 0.06 TCGA-SR-A6MQ-01 14 101533126 101533126 C T MIR656 RNA 0.06 TCGA-SR-A6MQ-01 14 94756360 94756360 C A SERPINA10 Missense_Mutation p.V191L 0.04 tolerated(0.51) benign(0.082) TCGA-SR-A6MQ-01 1 152277659 152277659 C T FLG Missense_Mutation p.A3235T 0.05 unknown(0) TCGA-SR-A6MQ-01 2 179611367 179611367 T A TTN Intron 0.07 TCGA-SR-A6MQ-01 2 48032102 48032102 G T MSH6 Silent p.V1164V 0.05 TCGA-SR-A6MQ-01 6 75841698 75841698 G A COL12A1 Silent p.R1965R 0.47 TCGA-SR-A6MQ-01 8 144407615 144407615 A G TOP1MT Missense_Mutation p.I191T 0.05 tolerated(0.48) benign(0.08) TCGA-SR-A6MQ-01 9 100258051 100258051 C T TDRD7 Silent p.N1061N 0.09 TCGA-SR-A6MQ-01 9 137328513 137328513 C G RXRA 3'UTR 0.17 TCGA-SR-A6MQ-01 X 119059273 119059273 G T NKAP Missense_Mutation p.N386K 0.04 deleterious(0) unknown(0) TCGA-SR-A6MQ-01 X 119070719 119070719 C A NKAP Intron 0.11 TCGA-SR-A6MQ-01 X 64951750 64951750 A G MSN Missense_Mutation p.Y201C 0.18 deleterious(0) probably_damaging(1) TCGA-SR-A6MR-01 10 79769406 79769406 T C POLR3A Missense_Mutation p.I600V 0.35 tolerated(0.79) benign(0.007) TCGA-SR-A6MR-01 10 98778790 98778790 G C SLIT1 Missense_Mutation p.H941D 0.08 tolerated(0.59) benign(0.049) TCGA-SR-A6MR-01 11 118965944 118965944 G A H2AFX Missense_Mutation p.A54V 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-SR-A6MR-01 11 8705560 8705560 C A RPL27A Missense_Mutation p.H25Q 0.14 deleterious(0.01) benign(0.318) TCGA-SR-A6MR-01 15 44955823 44955823 G C SPG11 Missense_Mutation p.A8G 0.33 tolerated_low_confidence(1) unknown(0) TCGA-SR-A6MR-01 17 80011174 80011174 G A GPS1 Missense_Mutation p.D60N 0.29 deleterious(0.03) probably_damaging(0.923) TCGA-SR-A6MR-01 19 46290019 46290019 G C DMWD Missense_Mutation p.H245Q 0.14 tolerated(0.5) benign(0.001) TCGA-SR-A6MR-01 2 179594164 179594164 C A TTN Missense_Mutation p.R6240L 0.30 TCGA-SR-A6MR-01 3 186793532 186793532 G T ST6GAL1 Nonsense_Mutation p.E388* 0.13 TCGA-SR-A6MS-01 17 46868938 46868938 C T TTLL6 Silent p.L342L 0.36 TCGA-SR-A6MS-01 17 73909901 73909901 C T FBF1 Splice_Site p.X1029_splice 0.43 TCGA-SR-A6MS-01 19 39359959 39359959 G C RINL Silent p.S522S 0.39 TCGA-SR-A6MS-01 3 46728472 46728472 C T ALS2CL Splice_Site p.X178_splice 0.19 TCGA-SR-A6MS-01 6 10415141 10415141 C T TFAP2A Intron 0.45 TCGA-SR-A6MS-01 6 105609351 105609351 G A POPDC3 Missense_Mutation p.A145V 0.32 deleterious(0) probably_damaging(1) TCGA-SR-A6MS-01 6 117203568 117203568 G A RFX6 Silent p.R181R 0.05 TCGA-SR-A6MS-01 7 141805741 141805741 A G MGAM 3'UTR 0.54 TCGA-SR-A6MS-01 9 97717559 97717559 A G C9orf3 Missense_Mutation p.K588E 0.44 deleterious(0) probably_damaging(1) TCGA-SR-A6MT-01 11 61110893 61110893 C A DAK Silent p.T315T 0.10 TCGA-SR-A6MT-01 14 106054030 106054030 C G IGHA2 Missense_Mutation p.E163D 0.16 tolerated(0.36) benign(0.015) TCGA-SR-A6MT-01 17 39884515 39884515 G A HAP1 Nonsense_Mutation p.Q380* 0.08 TCGA-SR-A6MT-01 17 61619703 61619703 C T KCNH6 Nonsense_Mutation p.Q686* 0.41 TCGA-SR-A6MT-01 19 55147968 55147968 C G LILRB1 Silent p.P559P 0.09 TCGA-SR-A6MT-01 1 196398825 196398825 T C KCNT2 Missense_Mutation p.Y234C 0.48 deleterious(0) probably_damaging(0.995) TCGA-SR-A6MT-01 22 26854435 26854435 C T HPS4 Missense_Mutation p.D608N 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-SR-A6MT-01 3 180630496 180630496 T G FXR1 Missense_Mutation p.V8G 0.25 deleterious(0) benign(0.289) TCGA-SR-A6MT-01 5 132099470 132099470 G C SEPT8 Silent p.L154L 0.05 TCGA-SR-A6MT-01 7 77326163 77326163 G A RSBN1L Missense_Mutation p.R126H 0.09 deleterious_low_confidence(0.04) possibly_damaging(0.715) TCGA-SR-A6MT-01 X 52847271 52847271 A G XAGE5 3'UTR 0.10 TCGA-SR-A6MU-01 10 31791358 31791358 C T ZEB1 Silent p.D135D 0.13 TCGA-SR-A6MU-01 14 86089608 86089608 C T FLRT2 Missense_Mutation p.R584W 0.10 deleterious(0) probably_damaging(0.996) TCGA-SR-A6MU-01 16 2569716 2569716 C T ATP6V0C Silent p.L146L 0.06 TCGA-SR-A6MU-01 16 71103196 71103196 G A HYDIN Missense_Mutation p.R650C 0.15 probably_damaging(0.992) TCGA-SR-A6MU-01 17 18967313 18967313 C G SNORD3B-2 RNA 0.09 TCGA-SR-A6MU-01 19 18321683 18321683 C T PDE4C 3'UTR 0.10 TCGA-SR-A6MU-01 1 247067288 247067288 T A AHCTF1 Missense_Mutation p.N319I 0.23 deleterious(0) benign(0.15) TCGA-SR-A6MU-01 20 2775281 2775281 C T CPXM1 Missense_Mutation p.R622H 0.09 tolerated(1) benign(0.002) TCGA-SR-A6MU-01 21 30927396 30927396 G A GRIK1 Missense_Mutation p.R862W 0.14 deleterious(0) possibly_damaging(0.798) TCGA-SR-A6MU-01 2 197184340 197184340 T C HECW2 Missense_Mutation p.H425R 0.12 tolerated_low_confidence(1) benign(0.001) TCGA-SR-A6MU-01 5 66461625 66461625 G T MAST4 Missense_Mutation p.K2206N 0.27 probably_damaging(0.925) TCGA-SR-A6MU-01 6 127911362 127911362 C T C6orf58 Nonsense_Mutation p.R269* 0.07 TCGA-SR-A6MU-01 6 31129467 31129467 G A TCF19 Missense_Mutation p.R161Q 0.13 tolerated(0.3) possibly_damaging(0.602) TCGA-SR-A6MU-01 6 32163789 32163789 A G NOTCH4 Missense_Mutation p.W1813R 0.42 tolerated(0.53) probably_damaging(0.999) TCGA-SR-A6MV-01 11 13402802 13402802 G A ARNTL Splice_Site p.X538_splice 0.07 TCGA-SR-A6MV-01 12 15800190 15800190 G C EPS8 Missense_Mutation p.S480C 0.26 deleterious(0.01) possibly_damaging(0.687) TCGA-SR-A6MV-01 19 32845169 32845169 C T ZNF507 Missense_Mutation p.A478V 0.06 tolerated(1) probably_damaging(0.935) TCGA-SR-A6MV-01 1 38455621 38455621 T C SF3A3 Missense_Mutation p.E6G 0.08 deleterious(0) probably_damaging(0.999) TCGA-SR-A6MV-01 20 44978962 44978962 C T SLC35C2 3'UTR 0.08 TCGA-SR-A6MV-01 22 31483985 31483985 G A SMTN Missense_Mutation p.R29H 0.18 tolerated(0.06) possibly_damaging(0.685) TCGA-SR-A6MV-01 2 46607406 46607406 A G EPAS1 Missense_Mutation p.Y532C 0.89 deleterious(0) probably_damaging(1) TCGA-SR-A6MV-01 2 63220752 63220752 G A EHBP1 Missense_Mutation p.V1012I 0.17 tolerated(0.07) benign(0.027) TCGA-SR-A6MV-01 5 149677492 149677492 G T ARSI Missense_Mutation p.P332H 0.19 deleterious(0) probably_damaging(1) TCGA-SR-A6MV-01 6 70854156 70854156 G A COL19A1 Splice_Site p.X560_splice 0.40 TCGA-SR-A6MV-01 7 101559400 101559400 A G CUX1 Silent p.E23E 0.06 TCGA-SR-A6MX-01 10 98097935 98097935 C T DNTT Missense_Mutation p.A495V 0.05 tolerated(0.06) benign(0.18) TCGA-SR-A6MX-01 11 10327207 10327208 CT - ADM 5'UTR 0.26 TCGA-SR-A6MX-01 12 123706152 123706152 T C MPHOSPH9 Silent p.K61K 0.38 TCGA-SR-A6MX-01 12 73046874 73046874 T A TRHDE Missense_Mutation p.N929K 0.49 deleterious(0) probably_damaging(0.993) TCGA-SR-A6MX-01 13 95235377 95235377 C T TGDS Missense_Mutation p.D143N 0.32 deleterious(0) possibly_damaging(0.908) TCGA-SR-A6MX-01 14 76012949 76012949 G A BATF Missense_Mutation p.E105K 0.32 deleterious(0.01) possibly_damaging(0.487) TCGA-SR-A6MX-01 14 99737529 99737529 C G BCL11B Silent p.P9P 0.32 TCGA-SR-A6MX-01 15 40866495 40866495 G T RPUSD2 3'UTR 0.28 TCGA-SR-A6MX-01 16 4408410 4408410 C T CORO7 Silent p.Q805Q 0.40 TCGA-SR-A6MX-01 17 11543597 11543597 G A DNAH9 Silent p.P599P 0.09 TCGA-SR-A6MX-01 17 45286778 45286778 A G MYL4 5'UTR 0.09 TCGA-SR-A6MX-01 17 78083827 78083827 C T GAA Silent p.N470N 0.28 TCGA-SR-A6MX-01 19 16632349 16632349 G A CHERP Silent p.H699H 0.64 TCGA-SR-A6MX-01 19 42791285 42791285 G T CIC Silent p.G115G 0.07 TCGA-SR-A6MX-01 19 54314500 54314500 C T NLRP12 Missense_Mutation p.R138Q 0.09 tolerated(0.87) benign(0.067) TCGA-SR-A6MX-01 1 183099545 183099545 G A LAMC1 Missense_Mutation p.R1116H 0.14 tolerated(0.07) probably_damaging(0.999) TCGA-SR-A6MX-01 1 226453951 226453951 C T LIN9 Missense_Mutation p.R316Q 0.58 tolerated(0.08) benign(0.158) TCGA-SR-A6MX-01 20 21689898 21689898 C T PAX1 Silent p.P366P 0.41 TCGA-SR-A6MX-01 3 47103836 47103836 G C SETD2 Missense_Mutation p.T2037R 0.38 tolerated(0.54) benign(0.013) TCGA-SR-A6MX-01 3 52724831 52724831 A G GNL3 Intron 0.62 TCGA-SR-A6MX-01 4 1732665 1732665 C T TACC3 Silent p.A479A 0.08 TCGA-SR-A6MX-01 4 46967155 46967155 G T GABRA4 Missense_Mutation p.F322L 0.34 deleterious(0) probably_damaging(0.999) TCGA-SR-A6MX-01 6 33652604 33652604 G A ITPR3 Missense_Mutation p.E1731K 0.08 tolerated(0.07) benign(0.055) TCGA-SR-A6MX-01 7 100685415 100685415 A T MUC17 Missense_Mutation p.E3573V 0.42 benign(0.002) TCGA-SR-A6MX-01 7 100865908 100865908 C T ZNHIT1 Missense_Mutation p.R16W 0.42 deleterious(0) possibly_damaging(0.551) TCGA-SR-A6MX-01 7 141464342 141464342 G A TAS2R3 Silent p.R128R 0.27 TCGA-SR-A6MX-01 7 149152905 149152905 C T ZNF777 Missense_Mutation p.R70Q 0.39 tolerated_low_confidence(0.17) benign(0.003) TCGA-SR-A6MX-01 7 1607329 1607329 C A PSMG3 3'UTR 0.41 TCGA-SR-A6MX-01 7 33020059 33020059 G C FKBP9 Missense_Mutation p.E263Q 0.43 tolerated(0.09) possibly_damaging(0.71) TCGA-SR-A6MX-01 9 13190215 13190215 T C MPDZ Silent p.T684T 0.58 TCGA-SR-A6MX-01 X 76777841 76777841 G - ATRX Frame_Shift_Del p.P2292Qfs*28 0.43 TCGA-SR-A6MY-01 10 101157431 101157431 T C GOT1 Missense_Mutation p.E372G 0.07 tolerated(0.09) benign(0.299) TCGA-SR-A6MY-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.43 tolerated(0.07) benign(0.069) TCGA-SR-A6MY-01 11 721659 721659 A G EPS8L2 Missense_Mutation p.K288R 0.07 tolerated(0.18) benign(0.071) TCGA-SR-A6MY-01 14 23531643 23531643 T C ACIN1 Silent p.K1049K 0.37 TCGA-SR-A6MY-01 16 19873270 19873270 G A GPRC5B Silent p.N352N 0.06 TCGA-SR-A6MY-01 19 48255821 48255821 C T GLTSCR2 Missense_Mutation p.A241V 0.05 tolerated(1) benign(0.002) TCGA-SR-A6MY-01 1 203453039 203453039 G A PRELP Missense_Mutation p.A243T 0.28 tolerated(0.44) benign(0.03) TCGA-SR-A6MY-01 1 2340298 2340299 - T PEX10 Splice_Site p.X65_splice 0.39 TCGA-SR-A6MZ-01 10 27700844 27700844 T C PTCHD3 Silent p.T368T 0.45 TCGA-SR-A6MZ-01 17 39566130 39566130 C A AC003958.2 RNA 0.27 TCGA-SR-A6MZ-01 1 15956918 15956918 G A DDI2 Missense_Mutation p.G123R 0.44 tolerated(0.26) possibly_damaging(0.553) TCGA-SR-A6MZ-01 1 23232562 23232562 T C EPHB2 Silent p.I617I 0.33 TCGA-SR-A6MZ-01 4 110925779 110925779 G C EGF Splice_Site p.X1097_splice 0.09 TCGA-SR-A6MZ-01 7 48311940 48311940 C T ABCA13 Missense_Mutation p.R893C 0.11 benign(0.001) TCGA-SR-A6MZ-01 X 12735149 12735149 C T FRMPD4 Silent p.A857A 0.16 TCGA-SR-A6N0-01 12 55820078 55820078 G A OR6C76 Missense_Mutation p.G14D 0.25 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-SR-A6N0-01 17 36099431 36099431 G A HNF1B Nonsense_Mutation p.Q182* 0.07 TCGA-SR-A6N0-01 19 1490185 1490185 C T PCSK4 Missense_Mutation p.R54H 0.07 tolerated(0.06) benign(0.063) TCGA-SR-A6N0-01 19 52919463 52919463 C G ZNF528 Missense_Mutation p.T453S 0.04 tolerated(0.22) benign(0.103) TCGA-SR-A6N0-01 1 63877718 63877718 C - ALG6 Frame_Shift_Del p.R268Vfs*8 0.16 TCGA-SR-A6N0-01 1 89597753 89597755 CTT TC GBP7 3'UTR 0.28 TCGA-SR-A6N0-01 5 131546166 131546166 G A P4HA2 Missense_Mutation p.R174C 0.06 deleterious(0) possibly_damaging(0.841) TCGA-SR-A6N0-01 5 14391061 14391061 A T TRIO Missense_Mutation p.T1394S 0.21 probably_damaging(0.962) TCGA-SR-A6N0-01 6 32184732 32184732 A G NOTCH4 Silent p.S617S 0.23 TCGA-SR-A6N0-01 8 141551409 141551409 G A AGO2 Missense_Mutation p.R630C 0.12 tolerated(0.25) possibly_damaging(0.638) TCGA-TT-A6YJ-01 11 111930686 111930690 TTGTG - DLAT Frame_Shift_Del p.V526* 0.30 TCGA-TT-A6YJ-01 12 247904 247904 G A IQSEC3 Missense_Mutation p.A459T 0.38 tolerated_low_confidence(0.16) benign(0.017) TCGA-TT-A6YJ-01 14 63511901 63511901 G A KCNH5 Missense_Mutation p.P2S 0.06 tolerated(0.4) benign(0.039) TCGA-TT-A6YJ-01 16 70688489 70688489 T C IL34 Missense_Mutation p.M26T 0.47 tolerated(0.09) benign(0.029) TCGA-TT-A6YJ-01 17 29550440 29550489 AATGAACTTTATGTTACTGCAGCTCACAAATGCTTTTTTACATCTGCAAG - NF1 Splice_Site p.X574_splice 0.66 TCGA-TT-A6YJ-01 18 14852025 14852025 G T ANKRD30B Missense_Mutation p.S1242I 0.47 deleterious(0.02) probably_damaging(0.975) TCGA-TT-A6YJ-01 19 10071084 10071084 C G COL5A3 3'UTR 0.29 TCGA-TT-A6YJ-01 1 114680328 114680328 C T SYT6 Missense_Mutation p.R202H 0.16 deleterious(0) probably_damaging(1) TCGA-TT-A6YJ-01 2 89442552 89442552 A G IGKV3-20 Missense_Mutation p.W14R 0.45 deleterious(0) probably_damaging(0.999) TCGA-TT-A6YJ-01 9 32633094 32633094 A T TAF1L Silent p.V828V 0.44 TCGA-TT-A6YK-01 10 103546089 103546089 T C MGEA5 3'UTR 0.31 TCGA-TT-A6YK-01 10 105331472 105331472 G A NEURL1 Missense_Mutation p.R181H 0.06 tolerated(0.09) possibly_damaging(0.893) TCGA-TT-A6YK-01 11 133796909 133796909 T A IGSF9B Missense_Mutation p.D570V 0.62 tolerated(0.07) benign(0.371) TCGA-TT-A6YK-01 11 16863161 16863161 C A PLEKHA7 Missense_Mutation p.D269Y 0.17 deleterious(0) possibly_damaging(0.86) TCGA-TT-A6YK-01 12 57642948 57642948 T C STAC3 Silent p.E70E 0.07 TCGA-TT-A6YK-01 13 50055170 50055170 G A SETDB2 Silent p.Q370Q 0.11 TCGA-TT-A6YK-01 14 71570317 71570317 T G PCNX Missense_Mutation p.L2009R 0.06 deleterious(0) probably_damaging(1) TCGA-TT-A6YK-01 18 77170440 77170440 C T NFATC1 Silent p.A42A 0.06 TCGA-TT-A6YK-01 19 33467599 33467599 C T C19orf40 3'UTR 0.12 TCGA-TT-A6YK-01 19 54848254 54848254 G A LILRA4 Silent p.Y371Y 0.09 TCGA-TT-A6YK-01 20 61542656 61542656 G C DIDO1 Silent p.P103P 0.41 TCGA-TT-A6YK-01 22 41980004 41980004 A T PMM1 Missense_Mutation p.C145S 0.14 deleterious(0.03) probably_damaging(0.996) TCGA-TT-A6YK-01 22 41980005 41980005 G C PMM1 Missense_Mutation p.S144R 0.14 deleterious(0) possibly_damaging(0.901) TCGA-TT-A6YK-01 8 21827087 21827087 C A XPO7 Silent p.R87R 0.25 TCGA-TT-A6YK-01 9 135866270 135866270 C A GFI1B Missense_Mutation p.H276N 0.19 deleterious(0) probably_damaging(0.976) TCGA-TT-A6YK-01 X 69825319 69825319 T C TEX11 Missense_Mutation p.T682A 0.31 tolerated(0.08) benign(0.261) TCGA-TT-A6YN-01 11 117090363 117090363 G A PCSK7 Missense_Mutation p.R423W 0.30 deleterious(0) probably_damaging(1) TCGA-TT-A6YN-01 1 186315295 186315295 C T TPR Missense_Mutation p.R1023K 0.25 benign(0.067) TCGA-TT-A6YN-01 2 99778810 99778810 G A LIPT1 Silent p.L130L 0.07 TCGA-TT-A6YN-01 6 112397154 112397154 G A TUBE1 Silent p.L266L 0.39 TCGA-TT-A6YN-01 6 161137789 161137789 C T PLG Missense_Mutation p.R261C 0.06 deleterious(0) probably_damaging(0.923) TCGA-TT-A6YN-01 7 157060410 157060410 C G UBE3C Silent p.L1071L 0.45 TCGA-TT-A6YO-01 1 150526285 150526285 G T ADAMTSL4 Missense_Mutation p.G273V 0.09 tolerated(0.38) benign(0.001) TCGA-TT-A6YP-01 11 59382787 59382787 C A OSBP Silent p.L117L 0.25 TCGA-TT-A6YP-01 12 5963272 5963272 G A ANO2 Silent p.H186H 0.17 TCGA-TT-A6YP-01 19 21607388 21607388 C G ZNF493 Missense_Mutation p.H643D 0.07 tolerated(0.49) benign(0.168) TCGA-TT-A6YP-01 19 8130917 8130917 G C FBN3 Silent p.T2772T 0.18 TCGA-TT-A6YP-01 19 8181576 8181576 C T FBN3 Missense_Mutation p.D1232N 0.35 deleterious(0.02) probably_damaging(0.928) TCGA-TT-A6YP-01 1 99772002 99772002 C T LPPR4 Silent p.I576I 0.12 TCGA-TT-A6YP-01 5 33577007 33577007 T C ADAMTS12 Missense_Mutation p.S1042G 0.07 tolerated(0.11) benign(0.01) TCGA-TT-A6YP-01 7 117025822 117025822 T C ASZ1 Missense_Mutation p.H161R 0.08 tolerated(0.09) benign(0.225) TCGA-TT-A6YP-01 7 154767578 154767578 C T PAXIP1 Missense_Mutation p.G301D 0.18 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-TT-A6YP-01 7 769319 769319 G A HEATR2 Silent p.S205S 0.17 TCGA-TT-A6YP-01 9 129458244 129458244 C T LMX1B Missense_Mutation p.T349M 0.17 deleterious(0) probably_damaging(1) TCGA-W2-A7H5-01 11 46404253 46404253 C A MDK Missense_Mutation p.R121S 0.07 tolerated(0.51) benign(0.068) TCGA-W2-A7H5-01 1 228505606 228505606 G A OBSCN Silent p.K5578K 0.36 TCGA-W2-A7H5-01 1 44474156 44474156 C T SLC6A9 Silent p.T226T 0.05 TCGA-W2-A7H5-01 2 73675529 73675529 A G ALMS1 Silent p.R624R 0.10 TCGA-W2-A7H5-01 6 160514903 160514903 C T IGF2R Intron 0.22 TCGA-W2-A7H5-01 6 36995325 36995325 G A FGD2 Missense_Mutation p.V576M 0.06 deleterious(0) probably_damaging(0.961) TCGA-W2-A7H5-01 6 38840747 38840747 G A DNAH8 Missense_Mutation p.V2218I 0.15 probably_damaging(0.999) TCGA-W2-A7H7-01 13 92346010 92346010 T C GPC5 Silent p.L299L 0.12 TCGA-W2-A7H7-01 17 36871916 36871916 A T MLLT6 Missense_Mutation p.T291S 0.10 tolerated(0.47) unknown(0) TCGA-W2-A7H7-01 19 5144146 5144146 A G KDM4B Missense_Mutation p.K907E 0.38 possibly_damaging(0.636) TCGA-W2-A7H7-01 19 58265270 58265270 C T ZNF776 Missense_Mutation p.R258C 0.09 deleterious(0) benign(0.022) TCGA-W2-A7H7-01 1 155723052 155723052 C A GON4L Nonsense_Mutation p.E1929* 0.15 TCGA-W2-A7H7-01 1 198498248 198498248 A G ATP6V1G3 Missense_Mutation p.M49T 0.11 tolerated(0.31) possibly_damaging(0.832) TCGA-W2-A7H7-01 1 6202616 6202616 C T CHD5 Missense_Mutation p.G698D 0.06 deleterious(0.01) probably_damaging(0.964) TCGA-W2-A7H7-01 20 3765453 3765453 A T CENPB Missense_Mutation p.S560T 0.12 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-W2-A7H7-01 22 18609712 18609712 G T TUBA8 Missense_Mutation p.V323L 0.21 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-W2-A7H7-01 3 130282279 130282279 G A COL6A6 Silent p.E144E 0.63 TCGA-W2-A7H7-01 4 129778604 129778604 A G JADE1 Missense_Mutation p.I326V 0.39 deleterious(0) possibly_damaging(0.806) TCGA-W2-A7H7-01 4 57832876 57832876 G A NOA1 Silent p.V558V 0.38 TCGA-W2-A7H7-01 5 125903982 125903982 T C ALDH7A1 Silent p.K280K 0.30 TCGA-W2-A7H7-01 5 54420759 54420759 A G CDC20B Missense_Mutation p.W363R 0.05 deleterious(0) probably_damaging(1) TCGA-W2-A7H7-01 8 19811698 19811698 A G LPL Silent p.A203A 0.13 TCGA-W2-A7HA-01 10 43609939 43609939 G T RET Missense_Mutation p.D631Y 0.40 deleterious(0) benign(0.033) TCGA-W2-A7HA-01 10 60028978 60028978 C T CISD1 5'UTR 0.21 TCGA-W2-A7HA-01 11 105009793 105009793 C T CARD18 Missense_Mutation p.R7H 0.10 deleterious(0.03) benign(0.035) TCGA-W2-A7HA-01 11 64781694 64781694 C T ARL2 Silent p.T5T 0.47 TCGA-W2-A7HA-01 11 67177213 67177213 C G TBC1D10C Missense_Mutation p.D443E 0.21 tolerated_low_confidence(0.39) benign(0.078) TCGA-W2-A7HA-01 14 102551717 102551717 T G HSP90AA1 Missense_Mutation p.Q316P 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-W2-A7HA-01 15 39885298 39885298 C T THBS1 Silent p.T955T 0.13 TCGA-W2-A7HA-01 16 55527178 55527178 G A MMP2 Missense_Mutation p.R482H 0.29 tolerated(0.09) probably_damaging(0.981) TCGA-W2-A7HA-01 16 816649 816649 T G MSLN Silent p.P412P 0.12 TCGA-W2-A7HA-01 17 32685095 32685095 G C CCL13 Missense_Mutation p.W81S 0.44 deleterious(0) probably_damaging(1) TCGA-W2-A7HA-01 17 44847186 44847186 G A WNT3 Missense_Mutation p.S184L 0.06 tolerated(0.15) possibly_damaging(0.625) TCGA-W2-A7HA-01 17 65074569 65074569 C T HELZ Silent p.A1876A 0.40 TCGA-W2-A7HA-01 19 51135613 51135613 G A SYT3 Missense_Mutation p.P202S 0.39 tolerated(1) benign(0.065) TCGA-W2-A7HA-01 1 147230307 147230307 G A GJA5 Missense_Mutation p.A347V 0.06 deleterious(0.01) unknown(0) TCGA-W2-A7HA-01 1 167794084 167794084 C T ADCY10 Missense_Mutation p.A1254T 0.32 tolerated(0.6) probably_damaging(0.946) TCGA-W2-A7HA-01 1 85431293 85431293 C A MCOLN2 Missense_Mutation p.R59I 0.09 deleterious(0) probably_damaging(0.999) TCGA-W2-A7HA-01 21 45518255 45518255 G A TRAPPC10 Silent p.K1062K 0.11 TCGA-W2-A7HA-01 2 131486787 131486787 C T GPR148 Silent p.L21L 0.13 TCGA-W2-A7HA-01 2 201768446 201768446 C G NIF3L1 3'UTR 0.13 TCGA-W2-A7HA-01 2 33413856 33413856 G A LTBP1 Missense_Mutation p.V547I 0.37 tolerated(0.25) benign(0.009) TCGA-W2-A7HA-01 3 48445926 48445926 T C PLXNB1 Silent p.A2125A 0.13 TCGA-W2-A7HA-01 4 184572391 184572391 G A RWDD4 Silent p.N65N 0.41 TCGA-W2-A7HA-01 4 38051409 38051409 C T TBC1D1 Silent p.F600F 0.36 TCGA-W2-A7HA-01 4 72204864 72204864 A T SLC4A4 Intron 0.11 TCGA-W2-A7HA-01 5 156482298 156482298 G A HAVCR1 Missense_Mutation p.S98F 0.08 deleterious(0) possibly_damaging(0.74) TCGA-W2-A7HA-01 7 142985577 142985577 C T CASP2 Missense_Mutation p.S10F 0.33 deleterious_low_confidence(0.03) benign(0.011) TCGA-W2-A7HA-01 8 9627729 9627729 A G TNKS Missense_Mutation p.N1285S 0.32 deleterious(0.02) possibly_damaging(0.804) TCGA-W2-A7HA-01 X 79999587 79999587 T C BRWD3 Missense_Mutation p.T253A 0.67 deleterious(0.01) benign(0.081) TCGA-W2-A7HB-01 12 464375 464375 G A KDM5A Silent p.D273D 0.08 TCGA-W2-A7HB-01 14 65237650 65237650 G A SPTB Silent p.S1917S 0.10 TCGA-W2-A7HB-01 15 52339183 52339183 C T MAPK6 Missense_Mutation p.R176W 0.26 deleterious(0.02) benign(0.008) TCGA-W2-A7HB-01 4 3237362 3237362 G T HTT Missense_Mutation p.G2881V 0.29 probably_damaging(1) TCGA-W2-A7HB-01 5 132272835 132272835 C T AFF4 Missense_Mutation p.R16K 0.12 deleterious(0) probably_damaging(0.987) TCGA-W2-A7HB-01 6 26123939 26123939 G T HIST1H2BC Missense_Mutation p.S65Y 0.29 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-W2-A7HB-01 7 87514300 87514302 GAA - DBF4 In_Frame_Del p.E77del 0.12 TCGA-W2-A7HB-01 8 11282013 11282013 C A FAM167A Nonsense_Mutation p.E172* 0.07 TCGA-W2-A7HB-01 8 118533175 118533175 G C MED30 Missense_Mutation p.Q20H 0.17 tolerated(0.18) possibly_damaging(0.556) TCGA-W2-A7HB-01 9 135458232 135458232 C T BARHL1 Silent p.R16R 0.27 TCGA-W2-A7HB-01 X 119505020 119505020 G C ATP1B4 Missense_Mutation p.D173H 0.16 tolerated(0.15) benign(0.11) TCGA-W2-A7HB-01 X 12809648 12809648 C A PRPS2 Nonsense_Mutation p.S11* 0.14 TCGA-W2-A7HC-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.39 tolerated(0.07) benign(0.069) TCGA-W2-A7HC-01 11 8752376 8752376 C T ST5 Missense_Mutation p.R154H 0.19 tolerated(0.13) benign(0.003) TCGA-W2-A7HC-01 14 96798922 96798922 C T ATG2B Silent p.G426G 0.31 TCGA-W2-A7HC-01 16 27523078 27523078 T C GTF3C1 Missense_Mutation p.Y373C 0.29 deleterious(0) probably_damaging(0.999) TCGA-W2-A7HC-01 17 42399848 42399848 C A SLC25A39 Missense_Mutation p.C88F 0.17 deleterious(0) possibly_damaging(0.854) TCGA-W2-A7HC-01 19 15052535 15052535 C T OR7C2 Missense_Mutation p.P79S 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-W2-A7HC-01 20 43933245 43933245 C T MATN4 Missense_Mutation p.R89H 0.33 possibly_damaging(0.498) TCGA-W2-A7HC-01 2 192543311 192543311 C G NABP1 5'UTR 0.42 TCGA-W2-A7HC-01 2 197002362 197002362 A G STK17B Missense_Mutation p.S310P 0.23 tolerated(0.35) benign(0) TCGA-W2-A7HC-01 2 201681960 201681960 A G BZW1 Silent p.K210K 0.23 TCGA-W2-A7HC-01 2 215593563 215593563 G A BARD1 Missense_Mutation p.A724V 0.42 deleterious(0) probably_damaging(0.999) TCGA-W2-A7HC-01 2 26204068 26204068 C T KIF3C Missense_Mutation p.G240D 0.06 probably_damaging(1) TCGA-W2-A7HC-01 4 113362081 113362081 A T ALPK1 Missense_Mutation p.T1183S 0.31 deleterious(0) probably_damaging(1) TCGA-W2-A7HC-01 5 43446327 43446327 G C C5orf28 Silent p.V215V 0.33 TCGA-W2-A7HC-01 6 116720670 116720670 T C DSE Missense_Mutation p.L86P 0.09 deleterious(0) probably_damaging(0.999) TCGA-W2-A7HC-01 6 161007643 161007643 A T LPA Missense_Mutation p.C1323S 0.55 deleterious(0) probably_damaging(0.973) TCGA-W2-A7HC-01 7 107414431 107414431 G A SLC26A3 Silent p.H647H 0.44 TCGA-W2-A7HC-01 7 27222340 27222340 G A HOXA11 3'UTR 0.28 TCGA-W2-A7HC-01 7 47898432 47898432 C A PKD1L1 Missense_Mutation p.A1401S 0.30 tolerated(0.28) benign(0.205) TCGA-W2-A7HC-01 8 101281047 101281047 A G RNF19A Missense_Mutation p.M386T 0.36 deleterious(0.01) benign(0.093) TCGA-W2-A7HC-01 9 35700005 35700005 T C TLN1 Missense_Mutation p.N2245S 0.38 tolerated(0.73) benign(0) TCGA-W2-A7HC-01 X 108784843 108784843 T C NXT2 Missense_Mutation p.V136A 0.71 deleterious(0) probably_damaging(0.997) TCGA-W2-A7HD-01 10 124402858 124402858 G A DMBT1 Missense_Mutation p.V2396I 0.50 tolerated(0.1) probably_damaging(0.939) TCGA-W2-A7HD-01 11 113699965 113699965 T C USP28 Missense_Mutation p.D338G 0.58 deleterious(0) possibly_damaging(0.477) TCGA-W2-A7HD-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.50 tolerated(0.07) benign(0.069) TCGA-W2-A7HD-01 11 62297449 62297449 T C AHNAK Missense_Mutation p.I1480M 0.43 benign(0.177) TCGA-W2-A7HD-01 11 63669773 63669773 A G MARK2 Missense_Mutation p.N402S 0.38 tolerated(0.45) benign(0.403) TCGA-W2-A7HD-01 11 85342776 85342776 C G TMEM126B Missense_Mutation p.L43V 0.10 tolerated(0.19) benign(0.027) TCGA-W2-A7HD-01 18 76953241 76953241 G A ATP9B Missense_Mutation p.S311N 0.04 tolerated(0.32) benign(0.052) TCGA-W2-A7HD-01 19 17160676 17160676 C A HAUS8 3'UTR 0.36 TCGA-W2-A7HD-01 1 149399185 149399185 C T HIST2H3PS2 3'Flank 0.06 TCGA-W2-A7HD-01 21 32492681 32492681 C T TIAM1 3'UTR 0.10 TCGA-W2-A7HD-01 2 208486586 208486586 G C METTL21A Missense_Mutation p.S68C 0.46 deleterious(0.03) benign(0.02) TCGA-W2-A7HD-01 3 169847313 169847313 G T PHC3 Missense_Mutation p.S316Y 0.27 deleterious(0.01) possibly_damaging(0.762) TCGA-W2-A7HD-01 5 147261032 147261032 G A SCGB3A2 Missense_Mutation p.V27M 0.07 tolerated(0.19) benign(0.11) TCGA-W2-A7HD-01 5 178994549 178994549 T C RUFY1 Silent p.N230N 0.43 TCGA-W2-A7HD-01 6 152590365 152590365 G A SYNE1 Silent p.P6210P 0.38 TCGA-W2-A7HD-01 6 161529848 161529848 A G MAP3K4 Missense_Mutation p.K1398R 0.04 tolerated(0.1) possibly_damaging(0.799) TCGA-W2-A7HD-01 6 38670847 38670847 C A GLO1 5'UTR 0.22 TCGA-W2-A7HD-01 7 154684108 154684108 T C DPP6 Missense_Mutation p.I839T 0.44 deleterious(0) probably_damaging(0.939) TCGA-W2-A7HD-01 7 78131086 78131086 T C MAGI2 Missense_Mutation p.D258G 0.14 deleterious(0.02) benign(0.405) TCGA-W2-A7HE-01 15 99903465 99903465 C A LRRC28 Missense_Mutation p.H342Q 0.08 tolerated(0.18) benign(0.017) TCGA-W2-A7HE-01 17 78333905 78333905 A T RNF213 Missense_Mutation p.N3700I 0.24 possibly_damaging(0.548) TCGA-W2-A7HE-01 3 148884979 148884979 G A HPS3 Silent p.P916P 0.07 TCGA-W2-A7HE-01 5 140236812 140236812 G A PCDHA10 Silent p.P393P 0.14 TCGA-W2-A7HE-01 X 154493536 154493536 A C RAB39B Missense_Mutation p.V13G 0.08 deleterious(0) probably_damaging(0.963) TCGA-W2-A7HF-01 13 23909416 23909416 C A SACS Missense_Mutation p.A2867S 0.44 benign(0.383) TCGA-W2-A7HF-01 20 25459587 25459587 G A NINL Missense_Mutation p.R725W 0.07 deleterious(0.03) benign(0.025) TCGA-W2-A7HF-01 7 143140670 143140670 T C TAS2R60 Missense_Mutation p.L42P 0.09 deleterious(0) probably_damaging(1) TCGA-W2-A7HF-01 8 19263389 19263389 C T CSGALNACT1 Missense_Mutation p.E501K 0.07 deleterious(0) probably_damaging(0.999) TCGA-W2-A7HF-01 9 130630213 130630213 G A AK1 3'UTR 0.23 TCGA-W2-A7HF-01 X 48206947 48206947 C A SSX3 Missense_Mutation p.D187Y 0.43 deleterious(0) probably_damaging(0.992) TCGA-W2-A7HH-01 10 90122340 90122340 G T RNLS Missense_Mutation p.F223L 0.37 deleterious(0) probably_damaging(0.973) TCGA-W2-A7HH-01 11 62622168 62622168 A C SLC3A2 5'Flank 0.31 TCGA-W2-A7HH-01 12 113442843 113442843 G A OAS2 Silent p.R428R 0.07 TCGA-W2-A7HH-01 16 67645506 67645506 T G CTCF Missense_Mutation p.I257M 0.38 tolerated(0.09) possibly_damaging(0.885) TCGA-W2-A7HH-01 19 19747568 19747568 G A GMIP Silent p.S425S 0.36 TCGA-W2-A7HH-01 19 5867557 5867557 A G FUT5 Silent p.N60N 0.30 TCGA-W2-A7HH-01 20 55206271 55206271 A G TFAP2C Missense_Mutation p.D20G 0.24 deleterious(0.03) benign(0.045) TCGA-W2-A7HH-01 2 166172011 166172011 A G SCN2A Missense_Mutation p.R472G 0.39 tolerated(0.29) possibly_damaging(0.64) TCGA-W2-A7HH-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.30 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-W2-A7HH-01 2 86276075 86276075 T C POLR1A Missense_Mutation p.R856G 0.27 deleterious(0.01) probably_damaging(0.977) TCGA-W2-A7HH-01 4 79860329 79860329 T C PAQR3 Missense_Mutation p.Y17C 0.32 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-W2-A7HH-01 6 11213930 11213930 C T NEDD9 Missense_Mutation p.V15I 0.34 deleterious(0.02) possibly_damaging(0.842) TCGA-W2-A7HH-01 X 38146339 38146339 T G RPGR Missense_Mutation p.E638A 0.36 benign(0.008) TCGA-W2-A7UY-01 10 125769796 125769796 G A CHST15 Missense_Mutation p.R519C 0.52 deleterious(0) probably_damaging(0.995) TCGA-W2-A7UY-01 12 104713352 104713352 C T TXNRD1 Silent p.Y326Y 0.23 TCGA-W2-A7UY-01 12 119942926 119942926 G A CCDC60 Missense_Mutation p.R234Q 0.35 tolerated(0.1) probably_damaging(0.977) TCGA-W2-A7UY-01 13 29855976 29855976 C T MTUS2 Missense_Mutation p.A937V 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-W2-A7UY-01 13 46701665 46701665 G C LCP1 3'UTR 0.48 TCGA-W2-A7UY-01 16 20331047 20331047 A G GP2 Missense_Mutation p.V304A 0.37 tolerated(1) benign(0.006) TCGA-W2-A7UY-01 16 80667072 80667072 C T CDYL2 Silent p.A226A 0.34 TCGA-W2-A7UY-01 17 61950686 61950686 G A CSH2 Silent p.S8S 0.19 TCGA-W2-A7UY-01 18 32833337 32833337 A G ZSCAN30 3'UTR 0.33 TCGA-W2-A7UY-01 19 12501827 12501827 G T ZNF799 Missense_Mutation p.S462Y 0.05 tolerated(0.19) probably_damaging(0.961) TCGA-W2-A7UY-01 19 12830080 12830080 G A TNPO2 Missense_Mutation p.S57L 0.34 deleterious(0.05) benign(0.112) TCGA-W2-A7UY-01 19 19371680 19371680 C A HAPLN4 Missense_Mutation p.E142D 0.45 deleterious(0) probably_damaging(0.998) TCGA-W2-A7UY-01 1 154309900 154309900 G T ATP8B2 Missense_Mutation p.R338L 0.42 tolerated(0.63) benign(0.001) TCGA-W2-A7UY-01 1 196645148 196645148 G A CFH Missense_Mutation p.R127H 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-W2-A7UY-01 3 97983244 97983244 G C OR5H6 Missense_Mutation p.C39S 0.05 deleterious(0) benign(0) TCGA-W2-A7UY-01 4 11401091 11401091 C T HS3ST1 Missense_Mutation p.R180H 0.43 tolerated(0.09) benign(0.01) TCGA-W2-A7UY-01 5 131931305 131931305 T A RAD50 Silent p.I670I 0.39 TCGA-W2-A7UY-01 5 141053009 141053009 G A ARAP3 Nonsense_Mutation p.Q311* 0.34 TCGA-W2-A7UY-01 5 157182115 157182115 T A LSM11 Missense_Mutation p.V309E 0.43 tolerated(0.17) benign(0.025) TCGA-W2-A7UY-01 5 43535001 43535001 G A PAIP1 Missense_Mutation p.S384L 0.10 tolerated(0.1) benign(0.084) TCGA-W2-A7UY-01 6 12290895 12290895 G T EDN1 Silent p.L11L 0.05 TCGA-W2-A7UY-01 6 142764556 142764556 C T GPR126 Silent p.V1219V 0.08 TCGA-W2-A7UY-01 8 95262480 95262480 T G GEM 3'UTR 0.44 TCGA-W2-A7UY-01 9 37974712 37974712 G A SHB Missense_Mutation p.R321W 0.39 deleterious(0.01) probably_damaging(0.995) TCGA-W2-A7UY-01 X 151900045 151900045 C T MAGEA12 Silent p.Q252Q 0.72 TCGA-WB-A80K-01 11 60637317 60637317 C T ZP1 Missense_Mutation p.A209V 0.07 tolerated(0.24) benign(0.008) TCGA-WB-A80K-01 12 125292412 125292412 C G SCARB1 Missense_Mutation p.V302L 0.30 tolerated(0.06) benign(0.033) TCGA-WB-A80K-01 12 65702352 65702352 T C MSRB3 Intron 0.05 TCGA-WB-A80K-01 13 111366587 111366587 C G ING1 5'Flank 0.24 TCGA-WB-A80K-01 14 24551759 24551759 T C NRL Missense_Mutation p.Q100R 0.07 tolerated(0.23) possibly_damaging(0.715) TCGA-WB-A80K-01 15 48063896 48063896 C T SEMA6D Missense_Mutation p.P1046S 0.10 tolerated(0.19) benign(0.019) TCGA-WB-A80K-01 16 2314324 2314324 G A RNPS1 Missense_Mutation p.S27L 0.07 deleterious_low_confidence(0) benign(0.184) TCGA-WB-A80K-01 17 47486440 47486440 G A PHB Silent p.A158A 0.20 TCGA-WB-A80K-01 19 10577609 10577609 C T PDE4A Missense_Mutation p.A658V 0.34 deleterious(0.01) probably_damaging(0.941) TCGA-WB-A80K-01 2 11586561 11586561 T C E2F6 3'UTR 0.18 TCGA-WB-A80K-01 2 27728649 27728649 C G GCKR Missense_Mutation p.T272S 0.07 tolerated(0.07) possibly_damaging(0.487) TCGA-WB-A80K-01 2 3502675 3502675 T C ADI1 3'UTR 0.10 TCGA-WB-A80K-01 3 16419524 16419524 G A RFTN1 Missense_Mutation p.A176V 0.08 tolerated(0.21) benign(0.01) TCGA-WB-A80K-01 3 172480266 172480266 T G ECT2 Missense_Mutation p.D273E 0.14 tolerated(0.22) possibly_damaging(0.659) TCGA-WB-A80K-01 5 126754828 126754828 C T MEGF10 Missense_Mutation p.T441I 0.50 tolerated(0.35) benign(0.001) TCGA-WB-A80K-01 6 42890951 42890951 C T PTCRA Missense_Mutation p.T82M 0.19 tolerated(0.08) benign(0.007) TCGA-WB-A80K-01 X 150349267 150349267 C G GPR50 Missense_Mutation p.H404Q 0.07 tolerated_low_confidence(0.11) benign(0.075) TCGA-WB-A80L-01 12 27067050 27067050 T C ASUN Silent p.L477L 0.06 TCGA-WB-A80L-01 4 23816227 23816227 G T PPARGC1A Silent p.G293G 0.20 TCGA-WB-A80M-01 10 91099316 91099316 G A IFIT3 Missense_Mutation p.G302R 0.65 tolerated(0.26) benign(0.009) TCGA-WB-A80M-01 11 66307235 66307235 G A ZDHHC24 Missense_Mutation p.A207V 0.12 tolerated(0.74) benign(0.012) TCGA-WB-A80M-01 14 81646632 81646643 CATCCTTGAGAT - GTF2A1 In_Frame_Del p.H352_G356delinsR 0.14 TCGA-WB-A80M-01 19 13879776 13879776 G A MRI1 Missense_Mutation p.R288H 0.56 tolerated(0.17) benign(0.002) TCGA-WB-A80M-01 1 115267956 115267956 T A CSDE1 Splice_Site p.X593_splice 0.75 TCGA-WB-A80M-01 2 198950399 198950399 C T PLCL1 Missense_Mutation p.P720S 0.42 deleterious(0.01) probably_damaging(0.959) TCGA-WB-A80M-01 4 108866589 108866589 A T CYP2U1 Silent p.I318I 0.07 TCGA-WB-A80M-01 4 85636525 85636525 C A WDFY3 Silent p.V2629V 0.48 TCGA-WB-A80M-01 7 93113301 93113301 G A CALCR Intron 0.41 TCGA-WB-A80M-01 9 125239932 125239932 C T OR1J1 Missense_Mutation p.V92I 0.35 tolerated_low_confidence(1) benign(0) TCGA-WB-A80M-01 9 95179741 95179741 C G OMD Missense_Mutation p.E34Q 0.42 tolerated(0.05) benign(0.35) TCGA-WB-A80N-01 10 126523309 126523309 T C FAM175B Silent p.S339S 0.31 TCGA-WB-A80N-01 11 533874 533874 T A HRAS Missense_Mutation p.Q61L 0.25 deleterious(0) possibly_damaging(0.476) TCGA-WB-A80N-01 11 62502998 62502998 G A TTC9C Missense_Mutation p.R128H 0.07 tolerated(0.17) benign(0) TCGA-WB-A80N-01 16 2821940 2821940 G C TCEB2 Intron 0.56 TCGA-WB-A80N-01 16 66942312 66942312 G A CDH16 Silent p.L825L 0.22 TCGA-WB-A80N-01 17 57288930 57288930 G T SMG8 Missense_Mutation p.M506I 0.29 tolerated(0.15) benign(0.065) TCGA-WB-A80N-01 19 52033997 52033997 C G SIGLEC6 Missense_Mutation p.C215S 0.29 deleterious(0) probably_damaging(0.999) TCGA-WB-A80N-01 2 128050376 128050376 T C ERCC3 Missense_Mutation p.K94R 0.30 tolerated(0.12) benign(0.232) TCGA-WB-A80N-01 3 3888472 3888472 G T LRRN1 Missense_Mutation p.W716L 0.14 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-WB-A80N-01 3 49775711 49775711 T C IP6K1 Missense_Mutation p.H123R 0.06 tolerated(0.7) benign(0.145) TCGA-WB-A80N-01 4 123542015 123542015 T G IL21 Missense_Mutation p.N51T 0.43 tolerated(0.86) benign(0.022) TCGA-WB-A80N-01 6 28963545 28963545 C T ZNF311 Missense_Mutation p.E412K 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-WB-A80N-01 7 33057052 33057052 G A NT5C3A Missense_Mutation p.T236I 0.38 deleterious(0.02) benign(0.024) TCGA-WB-A80N-01 7 79846820 79846820 T C GNAI1 3'UTR 0.44 TCGA-WB-A80O-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.49 tolerated(0.07) benign(0.069) TCGA-WB-A80O-01 12 52863523 52863523 A G KRT6C Missense_Mutation p.M452T 0.22 deleterious(0.01) possibly_damaging(0.796) TCGA-WB-A80O-01 15 23932274 23932274 C T NDN Missense_Mutation p.G31R 0.34 tolerated_low_confidence(0.17) benign(0.154) TCGA-WB-A80O-01 19 41354569 41354569 C T CYP2A6 Missense_Mutation p.R148H 0.07 probably_damaging(0.98) TCGA-WB-A80O-01 1 152058827 152058827 G A TCHHL1 Missense_Mutation p.T444I 0.08 tolerated(0.09) benign(0.317) TCGA-WB-A80O-01 1 53516319 53516319 G A SCP2 Missense_Mutation p.M529I 0.10 tolerated(0.07) probably_damaging(0.979) TCGA-WB-A80O-01 22 30953272 30953272 C A GAL3ST1 Silent p.P36P 0.08 TCGA-WB-A80O-01 3 136573458 136573458 T C SLC35G2 Silent p.N52N 0.33 TCGA-WB-A80O-01 3 178919203 178919203 C A PIK3CA Silent p.R230R 0.32 TCGA-WB-A80O-01 3 189705336 189705336 C T LEPREL1 Missense_Mutation p.A360T 0.08 tolerated(0.5) benign(0.001) TCGA-WB-A80O-01 3 195599219 195599219 T C TNK2 Missense_Mutation p.N523S 0.10 deleterious(0.03) benign(0.439) TCGA-WB-A80O-01 9 101498834 101498834 G T ANKS6 Missense_Mutation p.N861K 0.18 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-WB-A80P-01 15 43483811 43483811 G C CCNDBP1 Silent p.G266G 0.49 TCGA-WB-A80P-01 1 186106627 186106627 C A HMCN1 Intron 0.16 TCGA-WB-A80P-01 1 27238482 27238482 C A NR0B2 Missense_Mutation p.A210S 0.08 tolerated(0.22) benign(0.004) TCGA-WB-A80P-01 3 21462776 21462776 G A ZNF385D Missense_Mutation p.P373L 0.23 deleterious(0) benign(0.186) TCGA-WB-A80P-01 3 52812034 52812034 G A ITIH1 Splice_Site p.X46_splice 0.37 TCGA-WB-A80P-01 8 10480359 10480359 C T RP1L1 Missense_Mutation p.R118Q 0.33 benign(0.099) TCGA-WB-A80Q-01 10 115661652 115661652 C A NHLRC2 Missense_Mutation p.P456H 0.43 deleterious(0) probably_damaging(0.999) TCGA-WB-A80Q-01 12 100552782 100552782 C G AC010203.1 5'Flank 0.38 TCGA-WB-A80Q-01 14 50088617 50088617 A G MGAT2 Missense_Mutation p.I211V 0.36 tolerated(1) benign(0.403) TCGA-WB-A80Q-01 14 54417562 54417562 G A BMP4 Missense_Mutation p.R139C 0.08 deleterious(0) probably_damaging(0.977) TCGA-WB-A80Q-01 14 70989772 70989772 T A ADAM20 Missense_Mutation p.N618I 0.30 deleterious(0) probably_damaging(0.947) TCGA-WB-A80Q-01 17 68128236 68128236 A G KCNJ16 Missense_Mutation p.Y3C 0.30 tolerated_low_confidence(0.12) benign(0.293) TCGA-WB-A80Q-01 19 10229616 10229616 G A EIF3G Silent p.P56P 0.34 TCGA-WB-A80Q-01 1 16046372 16046372 C G PLEKHM2 Silent p.T203T 0.32 TCGA-WB-A80Q-01 20 43113157 43113157 T C TTPAL Missense_Mutation p.I209T 0.34 tolerated(0.25) benign(0.114) TCGA-WB-A80Q-01 20 9389817 9389817 A G PLCB4 Missense_Mutation p.Y651C 0.40 deleterious(0) benign(0) TCGA-WB-A80Q-01 2 164467612 164467612 T G FIGN Missense_Mutation p.S244R 0.42 tolerated(0.6) benign(0.044) TCGA-WB-A80Q-01 2 25470489 25470489 T G DNMT3A Missense_Mutation p.M329L 0.24 deleterious(0.03) benign(0.22) TCGA-WB-A80Q-01 2 98928751 98928751 C G VWA3B Missense_Mutation p.P1275R 0.31 deleterious_low_confidence(0.01) benign(0) TCGA-WB-A80Q-01 3 45837919 45837919 G A SLC6A20 5'UTR 0.11 TCGA-WB-A80Q-01 4 100063871 100063871 C T ADH4 Missense_Mutation p.V27I 0.04 tolerated(0.65) benign(0.008) TCGA-WB-A80Q-01 4 90170128 90170128 G C GPRIN3 Silent p.A378A 0.22 TCGA-WB-A80Q-01 X 102755566 102755566 T A RAB40A Missense_Mutation p.E40V 0.27 tolerated(0.07) benign(0.057) TCGA-WB-A80Q-01 X 23803819 23803819 G A SAT1 Missense_Mutation p.R121H 0.04 tolerated(0.34) benign(0.001) TCGA-WB-A80V-01 10 43617416 43617416 T C RET Missense_Mutation p.M918T 0.39 deleterious(0) probably_damaging(1) TCGA-WB-A80V-01 10 77158808 77158808 C T ZNF503 Missense_Mutation p.G547E 0.51 deleterious(0) probably_damaging(0.954) TCGA-WB-A80V-01 12 109192840 109192840 T C SSH1 Missense_Mutation p.I429V 0.48 tolerated(0.2) benign(0.03) TCGA-WB-A80V-01 12 123466570 123466570 C T ARL6IP4 Missense_Mutation p.A302V 0.09 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-WB-A80V-01 12 27129269 27129269 T C TM7SF3 Missense_Mutation p.D404G 0.23 deleterious(0.03) possibly_damaging(0.744) TCGA-WB-A80V-01 12 57868688 57868688 G A ARHGAP9 Missense_Mutation p.R541W 0.06 deleterious(0) probably_damaging(0.941) TCGA-WB-A80V-01 15 101440899 101440899 G A ALDH1A3 Missense_Mutation p.V335M 0.31 deleterious(0.03) probably_damaging(0.958) TCGA-WB-A80V-01 16 75646709 75646709 A T ADAT1 Missense_Mutation p.C159S 0.43 tolerated(0.56) possibly_damaging(0.511) TCGA-WB-A80V-01 17 46847140 46847140 G A TTLL6 Missense_Mutation p.S787F 0.42 tolerated_low_confidence(0.16) benign(0.037) TCGA-WB-A80V-01 18 12971218 12971218 G T SEH1L Missense_Mutation p.K196N 0.39 tolerated(0.06) possibly_damaging(0.749) TCGA-WB-A80V-01 19 50461638 50461638 A G SIGLEC11 Missense_Mutation p.L518P 0.09 deleterious(0) probably_damaging(1) TCGA-WB-A80V-01 19 52496083 52496083 T C ZNF615 3'UTR 0.37 TCGA-WB-A80V-01 1 120854564 120854564 C A FAM72B Nonsense_Mutation p.S143* 0.76 TCGA-WB-A80V-01 1 47402419 47402419 G A CYP4A11 Nonsense_Mutation p.R143* 0.81 TCGA-WB-A80V-01 2 101898392 101898392 G A RNF149 Missense_Mutation p.S363F 0.46 deleterious(0.03) possibly_damaging(0.815) TCGA-WB-A80V-01 2 105924111 105924111 T A TGFBRAP1 Silent p.I216I 0.04 TCGA-WB-A80V-01 3 155200763 155200763 A T PLCH1 Missense_Mutation p.S1026T 0.83 tolerated_low_confidence(0.14) benign(0.04) TCGA-WB-A80V-01 3 32932862 32932862 C T TRIM71 Silent p.H722H 0.75 TCGA-WB-A80V-01 4 74005476 74005476 T C ANKRD17 Missense_Mutation p.I953V 0.59 benign(0) TCGA-WB-A80V-01 6 160999682 160999682 A G LPA Silent p.C1448C 0.11 TCGA-WB-A80V-01 9 140043506 140043506 G A GRIN1 Missense_Mutation p.A227T 0.20 tolerated(0.29) benign(0.007) TCGA-WB-A80Y-01 11 103027262 103027262 A G DYNC2H1 Missense_Mutation p.D1297G 0.52 probably_damaging(0.962) TCGA-WB-A80Y-01 11 4615722 4615722 G A OR52I1 Missense_Mutation p.V152I 0.06 tolerated(1) benign(0.001) TCGA-WB-A80Y-01 11 59578208 59578208 C A MRPL16 5'UTR 0.26 TCGA-WB-A80Y-01 19 48647153 48647153 T C LIG1 Missense_Mutation p.K282E 0.38 tolerated(0.14) benign(0.004) TCGA-WB-A80Y-01 19 50208514 50208514 A G CPT1C Missense_Mutation p.E308G 0.36 deleterious(0.03) possibly_damaging(0.744) TCGA-WB-A80Y-01 1 205138795 205138795 A G DSTYK Missense_Mutation p.F274L 0.31 tolerated(0.94) benign(0) TCGA-WB-A80Y-01 3 180365982 180365982 A G CCDC39 Silent p.L445L 0.32 TCGA-WB-A80Y-01 8 18490305 18490305 T C PSD3 Missense_Mutation p.E743G 0.46 deleterious(0.01) benign(0.423) TCGA-WB-A80Y-01 X 153496178 153496178 G - OPN1MW2 Frame_Shift_Del p.M303Wfs*23 0.20 TCGA-WB-A814-01 11 62288421 62288421 C T AHNAK Missense_Mutation p.G4490R 0.39 benign(0.104) TCGA-WB-A814-01 1 19559123 19559123 C T EMC1 Missense_Mutation p.D593N 0.30 tolerated(0.15) benign(0.038) TCGA-WB-A814-01 1 92174280 92174280 G A TGFBR3 Nonsense_Mutation p.Q743* 0.19 TCGA-WB-A814-01 2 159517885 159517885 C T PKP4 Missense_Mutation p.R712W 0.06 deleterious(0) probably_damaging(0.991) TCGA-WB-A814-01 2 46607400 46607400 C T EPAS1 Missense_Mutation p.A530V 0.30 deleterious(0) probably_damaging(1) TCGA-WB-A814-01 2 73717628 73717628 G A ALMS1 Missense_Mutation p.G2847S 0.26 benign(0.136) TCGA-WB-A814-01 3 196199525 196199525 A G RNF168 Missense_Mutation p.I294T 0.26 tolerated(0.09) benign(0.002) TCGA-WB-A814-01 6 17283076 17283076 A T RBM24 Missense_Mutation p.K70M 0.06 deleterious(0.01) possibly_damaging(0.855) TCGA-WB-A814-01 7 47344521 47344521 G A TNS3 Missense_Mutation p.R911W 0.09 tolerated(0.07) benign(0.015) TCGA-WB-A815-01 10 100015403 100015403 G - LOXL4 Frame_Shift_Del p.Q508Rfs*29 0.21 TCGA-WB-A815-01 10 12071006 12071006 T C UPF2 Missense_Mutation p.I295V 0.29 tolerated(0.22) benign(0.194) TCGA-WB-A815-01 10 50948877 50948877 C G OGDHL Silent p.R673R 0.08 TCGA-WB-A815-01 11 14317330 14317330 T A RRAS2 Missense_Mutation p.R60S 0.66 tolerated(0.09) benign(0.066) TCGA-WB-A815-01 12 112654688 112654688 T G HECTD4 Missense_Mutation p.Y2279S 0.35 benign(0.364) TCGA-WB-A815-01 12 4665596 4665596 G C RAD51AP1 Missense_Mutation p.D284H 0.31 deleterious(0) possibly_damaging(0.605) TCGA-WB-A815-01 12 57869367 57869367 G A ARHGAP9 Missense_Mutation p.S448L 0.21 tolerated(0.13) probably_damaging(0.971) TCGA-WB-A815-01 17 8789897 8789897 G A PIK3R5 Missense_Mutation p.A644V 0.47 tolerated(0.21) benign(0.063) TCGA-WB-A815-01 18 13049394 13049394 A G CEP192 Silent p.T868T 0.23 TCGA-WB-A815-01 18 46858298 46858298 G T DYM Silent p.A233A 0.06 TCGA-WB-A815-01 1 117564514 117564514 T C CD101 Silent p.A779A 0.36 TCGA-WB-A815-01 1 151020749 151020749 T C C1orf56 Silent p.N142N 0.28 TCGA-WB-A815-01 1 155234529 155234529 G A CLK2 Missense_Mutation p.R323W 0.07 deleterious(0) probably_damaging(1) TCGA-WB-A815-01 1 246754968 246754968 C T CNST Missense_Mutation p.A35V 0.21 tolerated(0.7) benign(0.013) TCGA-WB-A815-01 1 9322245 9322245 G A H6PD Silent p.R291R 0.17 TCGA-WB-A815-01 21 38444872 38444872 T G PIGP Missense_Mutation p.T6P 0.57 deleterious_low_confidence(0) benign(0) TCGA-WB-A815-01 3 52471566 52471566 G T SEMA3G Missense_Mutation p.P619T 0.25 tolerated(0.51) benign(0.11) TCGA-WB-A815-01 5 80640854 80640854 T G ACOT12 Missense_Mutation p.E260D 0.52 deleterious(0) probably_damaging(0.976) TCGA-WB-A815-01 6 144761510 144761510 C T UTRN Missense_Mutation p.A472V 0.21 tolerated(0.12) benign(0.394) TCGA-WB-A815-01 6 54191706 54191706 G T TINAG Nonsense_Mutation p.E206* 0.26 TCGA-WB-A815-01 7 23296635 23296635 C G GPNMB Missense_Mutation p.H164Q 0.20 tolerated(0.43) benign(0.032) TCGA-WB-A815-01 7 42085066 42085066 C T GLI3 Missense_Mutation p.R248H 0.50 tolerated(0.11) probably_damaging(0.999) TCGA-WB-A815-01 9 115200815 115200815 C G HSDL2 Missense_Mutation p.P235A 0.28 tolerated(0.1) benign(0.044) TCGA-WB-A816-01 10 97141496 97141496 C A SORBS1 Missense_Mutation p.K533N 0.18 deleterious_low_confidence(0) possibly_damaging(0.58) TCGA-WB-A816-01 12 109844593 109844593 G A MYO1H Splice_Site p.X306_splice 0.16 TCGA-WB-A816-01 12 58217721 58217721 G C CTDSP2 Missense_Mutation p.S219W 0.26 deleterious(0.02) probably_damaging(0.981) TCGA-WB-A816-01 14 59930963 59930963 G A GPR135 Missense_Mutation p.R328C 0.08 deleterious(0) probably_damaging(0.999) TCGA-WB-A816-01 16 23456408 23456408 G A COG7 Silent p.S132S 0.25 TCGA-WB-A816-01 16 23456409 23456409 C T COG7 Missense_Mutation p.S132N 0.26 deleterious(0.01) possibly_damaging(0.821) TCGA-WB-A816-01 16 55361281 55361281 C T IRX6 Missense_Mutation p.P126L 0.22 deleterious(0) benign(0.314) TCGA-WB-A816-01 1 193219826 193219826 C A CDC73 Nonsense_Mutation p.S527* 0.09 TCGA-WB-A816-01 1 201860531 201860531 C G SHISA4 Missense_Mutation p.Q128E 0.10 deleterious(0.01) benign(0.042) TCGA-WB-A816-01 20 48491289 48491289 C A SLC9A8 Missense_Mutation p.H352N 0.23 deleterious(0) probably_damaging(0.921) TCGA-WB-A816-01 2 202272251 202272251 T A TRAK2 Missense_Mutation p.Y54F 0.29 deleterious(0.03) benign(0.118) TCGA-WB-A816-01 X 47836774 47836774 C T ZNF182 Missense_Mutation p.A238T 0.10 tolerated(0.12) benign(0.026) TCGA-WB-A817-01 15 42035001 42035001 A G MGA Missense_Mutation p.M1615V 0.33 tolerated(1) benign(0) TCGA-WB-A817-01 17 72539104 72539104 G T CD300C Missense_Mutation p.S141R 0.20 tolerated(0.24) benign(0.032) TCGA-WB-A817-01 19 54377573 54377573 G A MYADM Missense_Mutation p.D264N 0.06 tolerated(0.89) benign(0.004) TCGA-WB-A817-01 19 971939 971939 C T ARID3A Silent p.G552G 0.07 TCGA-WB-A817-01 1 186008083 186008083 G A HMCN1 Missense_Mutation p.V1992M 0.05 benign(0.103) TCGA-WB-A817-01 20 853491 853491 C G ANGPT4 3'UTR 0.29 TCGA-WB-A817-01 2 109369565 109369565 C A RANBP2 Missense_Mutation p.P623T 0.21 deleterious(0.01) benign(0.097) TCGA-WB-A817-01 2 205829978 205829978 C T PARD3B Missense_Mutation p.A109V 0.06 tolerated(0.2) benign(0.318) TCGA-WB-A817-01 2 230272009 230272009 G A DNER Silent p.N554N 0.28 TCGA-WB-A817-01 3 53757871 53757879 TCCATCGCT - CACNA1D In_Frame_Del p.I670_S672del 0.16 TCGA-WB-A817-01 X 46951083 46951083 G T RGN Missense_Mutation p.R190L 0.12 tolerated(0.05) possibly_damaging(0.817) TCGA-WB-A818-01 10 35103910 35103910 A G PARD3 Missense_Mutation p.V5A 0.25 deleterious(0) probably_damaging(0.998) TCGA-WB-A818-01 10 97131803 97131803 G A SORBS1 Missense_Mutation p.P581S 0.38 deleterious(0) probably_damaging(0.999) TCGA-WB-A818-01 14 64685207 64685207 C T SYNE2 Missense_Mutation p.A6545V 0.20 possibly_damaging(0.81) TCGA-WB-A818-01 16 3306389 3306389 C T MEFV Missense_Mutation p.V67M 0.28 deleterious(0) probably_damaging(0.995) TCGA-WB-A818-01 17 10305000 10305000 C T MYH8 Missense_Mutation p.E931K 0.08 deleterious(0) benign(0.021) TCGA-WB-A818-01 17 29667527 29667528 CG - NF1 Frame_Shift_Del p.P2310Sfs*16 0.31 TCGA-WB-A818-01 19 36004008 36004008 C T DMKN Missense_Mutation p.G124R 0.50 deleterious(0.03) benign(0.286) TCGA-WB-A818-01 1 228596776 228596776 G C TRIM17 Intron 0.29 TCGA-WB-A818-01 9 127915922 127915922 G A PPP6C Missense_Mutation p.H224Y 0.07 deleterious(0.02) benign(0.007) TCGA-WB-A818-01 X 40990708 40990708 A G USP9X Splice_Site p.X81_splice 0.06 TCGA-WB-A819-01 10 43617416 43617416 T C RET Missense_Mutation p.M918T 0.29 deleterious(0) probably_damaging(1) TCGA-WB-A819-01 16 56545120 56545120 T C BBS2 Missense_Mutation p.N141S 0.05 tolerated(0.05) possibly_damaging(0.746) TCGA-WB-A819-01 17 1577856 1577856 T C PRPF8 Missense_Mutation p.E1060G 0.07 deleterious(0) possibly_damaging(0.862) TCGA-WB-A819-01 17 80400118 80400118 C A HEXDC Silent p.R470R 0.22 TCGA-WB-A819-01 18 72776115 72776115 C G ZNF407 Missense_Mutation p.I2146M 0.31 deleterious(0) probably_damaging(0.995) TCGA-WB-A819-01 1 201029810 201029810 G T CACNA1S Silent p.L1130L 0.04 TCGA-WB-A819-01 1 89427800 89427800 C A CCBL2 Missense_Mutation p.C161F 0.08 deleterious(0) probably_damaging(0.985) TCGA-WB-A819-01 20 49551759 49551759 A G DPM1 Silent p.F231F 0.26 TCGA-WB-A819-01 8 70540461 70540461 C T SULF1 Missense_Mutation p.H700Y 0.24 deleterious(0.05) benign(0.282) TCGA-WB-A81A-01 11 123900690 123900690 C T OR10G8 Missense_Mutation p.R121C 0.04 deleterious(0.01) probably_damaging(0.957) TCGA-WB-A81A-01 17 17250246 17250246 C T NT5M Silent p.S224S 0.21 TCGA-WB-A81A-01 17 30348408 30348408 G A LRRC37B Silent p.S81S 0.46 TCGA-WB-A81A-01 1 236154305 236154305 C T NID1 Missense_Mutation p.V937M 0.51 deleterious(0) benign(0.063) TCGA-WB-A81A-01 22 19226895 19226895 A G CLTCL1 Missense_Mutation p.V233A 0.04 deleterious(0) possibly_damaging(0.562) TCGA-WB-A81A-01 2 118582524 118582524 T C DDX18 Silent p.V405V 0.08 TCGA-WB-A81A-01 3 38104135 38104135 G A DLEC1 Missense_Mutation p.D313N 0.08 deleterious(0.01) benign(0.135) TCGA-WB-A81A-01 7 151933008 151933008 G A KMT2C Missense_Mutation p.S888F 0.10 probably_damaging(0.998) TCGA-WB-A81A-01 7 48315331 48315331 T A ABCA13 Missense_Mutation p.L2023H 0.18 possibly_damaging(0.599) TCGA-WB-A81A-01 9 104357180 104357180 C T PPP3R2 Silent p.P11P 0.43 TCGA-WB-A81D-01 10 34408631 34408631 G A PARD3 Missense_Mutation p.S1196L 0.29 deleterious_low_confidence(0.02) probably_damaging(0.992) TCGA-WB-A81D-01 10 62648781 62648781 T C RHOBTB1 Silent p.Q215Q 0.08 TCGA-WB-A81D-01 10 95360770 95360770 C T RBP4 Missense_Mutation p.A6T 0.32 tolerated(0.4) probably_damaging(0.989) TCGA-WB-A81D-01 10 99655137 99655137 G A CRTAC1 Missense_Mutation p.R451C 0.47 tolerated(0.08) possibly_damaging(0.794) TCGA-WB-A81D-01 11 1269346 1269346 G C MUC5B Missense_Mutation p.A3746P 0.24 unknown(0) TCGA-WB-A81D-01 13 37598536 37598536 C T SUPT20H Missense_Mutation p.G458D 0.09 deleterious(0.04) benign(0.38) TCGA-WB-A81D-01 14 94770725 94770725 A T SERPINA6 3'UTR 0.36 TCGA-WB-A81D-01 16 1261233 1261233 T C CACNA1H Missense_Mutation p.I1430T 0.06 deleterious(0) probably_damaging(0.997) TCGA-WB-A81D-01 16 2131703 2131703 C T TSC2 Missense_Mutation p.R1240C 0.07 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-WB-A81D-01 17 15457141 15457141 T A TVP23C-CDRT4 Missense_Mutation p.H33L 0.28 deleterious(0) possibly_damaging(0.476) TCGA-WB-A81D-01 18 55338716 55338716 G C ATP8B1 Missense_Mutation p.T639R 0.28 deleterious(0) probably_damaging(1) TCGA-WB-A81D-01 20 23666505 23666505 C T CST4 3'UTR 0.29 TCGA-WB-A81D-01 20 32436406 32436406 C G CHMP4B Missense_Mutation p.N108K 0.13 tolerated(0.08) possibly_damaging(0.83) TCGA-WB-A81D-01 3 122545710 122545710 A G DIRC2 Silent p.P167P 0.14 TCGA-WB-A81D-01 3 382547 382547 A G CHL1 Silent p.P152P 0.39 TCGA-WB-A81D-01 3 46620740 46620740 T C TDGF1 Missense_Mutation p.F36S 0.16 tolerated(0.28) benign(0.015) TCGA-WB-A81D-01 5 140589813 140589813 A G PCDHB12 Missense_Mutation p.N445S 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-WB-A81D-01 6 159647583 159647583 C T FNDC1 Missense_Mutation p.A384V 0.23 deleterious(0.04) unknown(0) TCGA-WB-A81D-01 X 3559973 3559973 G A PRKX Silent p.P213P 0.38 TCGA-WB-A81E-01 10 124392750 124392750 C A DMBT1 Missense_Mutation p.D2018E 0.43 tolerated(1) benign(0.12) TCGA-WB-A81E-01 10 128118419 128118419 T C C10orf90 Missense_Mutation p.D633G 0.12 tolerated(0.08) possibly_damaging(0.586) TCGA-WB-A81E-01 12 48529135 48529135 G A PFKM Missense_Mutation p.G373D 0.17 deleterious(0) probably_damaging(0.988) TCGA-WB-A81E-01 15 57730597 57730597 G A CGNL1 Missense_Mutation p.D134N 0.06 deleterious(0.02) benign(0.174) TCGA-WB-A81E-01 16 3706108 3706108 C G DNASE1 Missense_Mutation p.A81G 0.11 tolerated(0.09) benign(0.01) TCGA-WB-A81E-01 17 27023888 27023888 C T SUPT6H Missense_Mutation p.P1333S 0.33 deleterious(0.03) probably_damaging(0.998) TCGA-WB-A81E-01 19 39127527 39127527 A C EIF3K Splice_Site p.X209_splice 0.05 TCGA-WB-A81E-01 19 40199856 40199856 G C LGALS14 Missense_Mutation p.R137P 0.08 tolerated(0.4) benign(0.018) TCGA-WB-A81E-01 1 17575683 17575683 G A PADI3 Silent p.A17A 0.06 TCGA-WB-A81E-01 20 33449307 33449307 G A GGT7 Missense_Mutation p.R206W 0.15 tolerated(0.06) benign(0.284) TCGA-WB-A81E-01 20 54972305 54972305 G T CSTF1 Missense_Mutation p.R71L 0.06 tolerated(0.38) benign(0.026) TCGA-WB-A81E-01 21 37716913 37716913 C G MORC3 Missense_Mutation p.Q265E 0.11 deleterious(0) possibly_damaging(0.9) TCGA-WB-A81E-01 21 47648646 47648646 G A LSS Missense_Mutation p.T5M 0.21 deleterious_low_confidence(0) possibly_damaging(0.808) TCGA-WB-A81E-01 2 171675133 171675133 C T GAD1 Missense_Mutation p.T11I 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-WB-A81E-01 2 187455082 187455082 G A ITGAV Missense_Mutation p.R6Q 0.10 tolerated_low_confidence(0.35) unknown(0) TCGA-WB-A81E-01 2 233721515 233721515 A G GIGYF2 Missense_Mutation p.N1303S 0.13 unknown(0) TCGA-WB-A81E-01 3 52840340 52840340 T A ITIH3 Silent p.I658I 0.08 TCGA-WB-A81E-01 6 114270226 114270226 T C HDAC2 Missense_Mutation p.Y253C 0.06 deleterious(0) probably_damaging(0.951) TCGA-WB-A81E-01 X 153043694 153043694 G A PLXNB3 Intron 0.11 TCGA-WB-A81E-01 X 18616728 18616728 T C CDKL5 Silent p.S324S 0.11 TCGA-WB-A81F-01 10 131639196 131639196 A G EBF3 Silent p.N482N 0.13 TCGA-WB-A81F-01 11 117280555 117280555 T G CEP164 Missense_Mutation p.L1324V 0.10 tolerated(0.51) benign(0.018) TCGA-WB-A81F-01 11 3680432 3680432 A G ART1 5'UTR 0.59 TCGA-WB-A81F-01 1 89528883 89528883 C T GBP1 Missense_Mutation p.C12Y 0.57 deleterious(0.01) possibly_damaging(0.665) TCGA-WB-A81F-01 3 52552363 52552363 C A STAB1 Missense_Mutation p.S1599R 0.19 tolerated(0.54) benign(0.013) TCGA-WB-A81F-01 8 28997654 28997654 T C KIF13B Missense_Mutation p.R847G 0.38 tolerated(0.08) benign(0.006) TCGA-WB-A81G-01 12 91550888 91550888 G A DCN Missense_Mutation p.R206C 0.05 deleterious(0) probably_damaging(0.998) TCGA-WB-A81G-01 16 23387059 23387059 G T SCNN1B Missense_Mutation p.A385S 0.06 tolerated(0.57) benign(0.305) TCGA-WB-A81G-01 18 21523936 21523936 G A LAMA3 Splice_Site p.X3070_splice 0.13 TCGA-WB-A81G-01 19 58420525 58420525 T C ZNF417 Missense_Mutation p.H374R 0.25 deleterious(0) probably_damaging(0.983) TCGA-WB-A81G-01 1 2125338 2125338 G A C1orf86 Silent p.C70C 0.07 TCGA-WB-A81G-01 1 48708248 48708248 A G SLC5A9 Silent p.G624G 0.09 TCGA-WB-A81G-01 1 79401981 79401981 A T ELTD1 Missense_Mutation p.N292K 0.10 deleterious(0.04) benign(0.021) TCGA-WB-A81G-01 2 178095647 178095647 G A NFE2L2 Missense_Mutation p.L562F 0.18 deleterious(0.01) possibly_damaging(0.823) TCGA-WB-A81G-01 2 197987396 197987396 T C ANKRD44 Missense_Mutation p.H224R 0.08 tolerated(0.12) benign(0.017) TCGA-WB-A81G-01 2 56216166 56216166 A T MIR216A RNA 0.08 TCGA-WB-A81G-01 2 58459209 58459209 A G FANCL Silent p.D45D 0.11 TCGA-WB-A81G-01 5 38904125 38904128 AAGT - OSMR Splice_Site p.X378_splice 0.34 TCGA-WB-A81G-01 5 434411 434411 C T AHRR Missense_Mutation p.P541L 0.23 tolerated(0.14) benign(0.018) TCGA-WB-A81G-01 X 152085712 152085712 C A ZNF185 Silent p.R88R 0.09 TCGA-WB-A81H-01 11 111853098 111853098 G A DIXDC1 Silent p.R268R 0.10 TCGA-WB-A81H-01 11 1269120 1269120 C A MUC5B Missense_Mutation p.H3670Q 0.08 unknown(0) TCGA-WB-A81H-01 12 78443848 78443848 T C NAV3 Missense_Mutation p.M700T 0.11 deleterious(0) probably_damaging(0.991) TCGA-WB-A81H-01 14 99641428 99641428 C A BCL11B Missense_Mutation p.G582V 0.09 tolerated(0.26) possibly_damaging(0.573) TCGA-WB-A81H-01 15 62146536 62146536 C T VPS13C 3'UTR 0.30 TCGA-WB-A81H-01 17 29557298 29557313 ATATGGTCCATGCAAT - NF1 Frame_Shift_Del p.N1004Ifs*3 0.15 TCGA-WB-A81H-01 17 55917042 55917042 T C MRPS23 3'UTR 0.25 TCGA-WB-A81H-01 19 1105248 1105248 G A GPX4 Missense_Mutation p.D50N 0.15 tolerated(0.09) benign(0.418) TCGA-WB-A81H-01 19 16000403 16000403 T C CYP4F2 Missense_Mutation p.T250A 0.29 deleterious(0.01) possibly_damaging(0.734) TCGA-WB-A81H-01 1 213415627 213415627 A T RPS6KC1 Missense_Mutation p.L936F 0.10 deleterious(0) probably_damaging(1) TCGA-WB-A81H-01 2 125555706 125555706 T C CNTNAP5 Missense_Mutation p.V1008A 0.14 deleterious(0.02) possibly_damaging(0.529) TCGA-WB-A81H-01 2 211302429 211302429 G A LANCL1 Silent p.L286L 0.13 TCGA-WB-A81H-01 2 55252907 55252910 AAAT - RTN4 Frame_Shift_Del p.F776Sfs*3 0.19 TCGA-WB-A81H-01 3 149238571 149238571 T C WWTR1 3'UTR 0.10 TCGA-WB-A81H-01 4 71275374 71275374 G A PROL1 Missense_Mutation p.R110K 0.09 deleterious_low_confidence(0) benign(0.14) TCGA-WB-A81H-01 6 152472814 152472814 G A SYNE1 Silent p.G8108G 0.19 TCGA-WB-A81H-01 7 26224911 26224914 AGAT - NFE2L3 Frame_Shift_Del p.D532Efs*3 0.31 TCGA-WB-A81I-01 11 103027115 103027115 A G DYNC2H1 Splice_Site p.X1249_splice 0.38 TCGA-WB-A81I-01 11 58877137 58877137 C T FAM111B Silent p.S13S 0.09 TCGA-WB-A81I-01 13 103343216 103343216 C T METTL21C Missense_Mutation p.E77K 0.14 tolerated(0.55) benign(0.002) TCGA-WB-A81I-01 13 25744194 25744194 C T AMER2 Missense_Mutation p.E522K 0.10 deleterious(0.01) possibly_damaging(0.741) TCGA-WB-A81I-01 16 58589235 58589236 AT - CNOT1 Frame_Shift_Del p.Y937Cfs*3 0.30 TCGA-WB-A81I-01 17 10537355 10537355 G C MYH3 Missense_Mutation p.R1501G 0.09 deleterious(0) benign(0.38) TCGA-WB-A81I-01 19 57037154 57037154 G A ZNF471 Missense_Mutation p.C573Y 0.19 deleterious(0.01) probably_damaging(1) TCGA-WB-A81I-01 22 42273265 42273265 G A SREBF2 Silent p.A473A 0.08 TCGA-WB-A81I-01 2 69741805 69741807 TGT - AAK1 In_Frame_Del p.Q526del 0.56 TCGA-WB-A81I-01 5 123982608 123982608 G A ZNF608 Missense_Mutation p.P1157S 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-WB-A81I-01 7 142032456 142032456 C T TRBV7-1 Silent p.S92S 0.59 TCGA-WB-A81I-01 7 89982134 89982134 G A GTPBP10 Missense_Mutation p.G13E 0.11 tolerated(0.06) possibly_damaging(0.77) TCGA-WB-A81I-01 8 110457177 110457177 C T PKHD1L1 Silent p.V1693V 0.44 TCGA-WB-A81I-01 8 28928038 28928038 T G KIF13B Missense_Mutation p.K1822Q 0.17 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-WB-A81J-01 13 37269476 37269476 C G SERTM1 Missense_Mutation p.F87L 0.15 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-WB-A81J-01 17 10359164 10359164 G A MYH4 Missense_Mutation p.R675W 0.05 deleterious(0) probably_damaging(0.999) TCGA-WB-A81J-01 18 70205425 70205425 C A CBLN2 Missense_Mutation p.V221L 0.10 tolerated(0.52) benign(0.17) TCGA-WB-A81J-01 19 47725177 47725177 T C BBC3 Splice_Site p.X190_splice 0.11 TCGA-WB-A81J-01 1 201330213 201330213 C T TNNT2 Intron 0.54 TCGA-WB-A81J-01 20 61512558 61512558 G T DIDO1 Missense_Mutation p.R1584S 0.54 benign(0.001) TCGA-WB-A81J-01 22 26997913 26997913 C G CRYBB1 Missense_Mutation p.D169H 0.51 deleterious(0) probably_damaging(0.986) TCGA-WB-A81J-01 2 98928440 98928440 C T VWA3B Missense_Mutation p.S1227F 0.55 deleterious_low_confidence(0.01) benign(0.041) TCGA-WB-A81J-01 3 142054337 142054337 T C XRN1 Missense_Mutation p.K1298E 0.54 tolerated_low_confidence(0.24) benign(0.027) TCGA-WB-A81J-01 4 47570852 47570852 A G ATP10D Splice_Site p.X952_splice 0.89 TCGA-WB-A81J-01 7 48431693 48431693 G A ABCA13 Missense_Mutation p.A3944T 0.12 possibly_damaging(0.868) TCGA-WB-A81K-01 10 74899424 74899424 A T ECD Missense_Mutation p.L433H 0.07 deleterious(0) probably_damaging(0.988) TCGA-WB-A81K-01 15 55965852 55965852 A G PRTG Silent p.I523I 0.13 TCGA-WB-A81K-01 19 30193594 30193594 C T C19orf12 3'UTR 0.15 TCGA-WB-A81K-01 1 16935133 16935133 C T NBPF1 5'UTR 0.21 TCGA-WB-A81K-01 1 38397417 38397417 G T INPP5B Intron 0.14 TCGA-WB-A81K-01 4 126408600 126408600 C G FAT4 Missense_Mutation p.T4306S 0.07 benign(0.019) TCGA-WB-A81K-01 4 175183979 175183979 T C FBXO8 Missense_Mutation p.T89A 0.15 deleterious(0) probably_damaging(0.998) TCGA-WB-A81K-01 5 150722489 150722489 T A SLC36A2 Missense_Mutation p.N134Y 0.06 tolerated(0.06) benign(0.251) TCGA-WB-A81K-01 5 6600272 6600272 G T NSUN2 Missense_Mutation p.P691T 0.07 deleterious(0.01) possibly_damaging(0.792) TCGA-WB-A81K-01 6 31659685 31659685 C T ABHD16A Missense_Mutation p.A213T 0.25 tolerated(0.1) benign(0.153) TCGA-WB-A81K-01 6 33383926 33383926 C T PHF1 3'UTR 0.27 TCGA-WB-A81M-01 10 135193918 135193918 C A PAOX Missense_Mutation p.S199R 0.08 deleterious(0) probably_damaging(0.986) TCGA-WB-A81M-01 11 124489205 124489205 C A PANX3 Silent p.R185R 0.42 TCGA-WB-A81M-01 11 124739959 124739959 T C ROBO3 Missense_Mutation p.V254A 0.53 deleterious(0.02) probably_damaging(0.956) TCGA-WB-A81M-01 15 65108897 65108897 G A PIF1 Missense_Mutation p.A581V 0.11 deleterious(0) probably_damaging(1) TCGA-WB-A81M-01 15 89744348 89744348 C T ABHD2 3'UTR 0.30 TCGA-WB-A81M-01 19 48239781 48239781 G A EHD2 Silent p.Q357Q 0.41 TCGA-WB-A81M-01 1 115272911 115272912 - C CSDE1 Frame_Shift_Ins p.K488Efs*4 0.47 TCGA-WB-A81M-01 1 16812092 16812092 G A CROCCP3 RNA 0.63 TCGA-WB-A81M-01 1 204587794 204587794 G A LRRN2 Silent p.L443L 0.09 TCGA-WB-A81M-01 1 51121170 51121170 T C FAF1 Missense_Mutation p.I230V 0.85 tolerated(0.33) benign(0.194) TCGA-WB-A81M-01 20 50407310 50407310 C T SALL4 Missense_Mutation p.C571Y 0.45 deleterious(0) probably_damaging(0.998) TCGA-WB-A81M-01 3 67054375 67054375 G T KBTBD8 Silent p.G328G 0.09 TCGA-WB-A81M-01 4 55575675 55575675 G A KIT Missense_Mutation p.A401T 0.04 tolerated(0.21) benign(0.005) TCGA-WB-A81M-01 9 116171264 116171264 C A POLE3 Splice_Site p.X91_splice 0.15 TCGA-WB-A81M-01 X 99945087 99945087 T A SYTL4 Missense_Mutation p.I265F 0.16 tolerated(0.68) benign(0.209) TCGA-WB-A81N-01 12 69981763 69981763 G A CCT2 Missense_Mutation p.V104I 0.07 tolerated(0.15) benign(0.421) TCGA-WB-A81N-01 17 1686379 1686379 A G SMYD4 Silent p.S737S 0.09 TCGA-WB-A81N-01 17 33690016 33690017 TC A SLFN11 Frame_Shift_Del p.L270Ffs*5 0.10 TCGA-WB-A81N-01 17 80007802 80007802 T C RFNG Silent p.P218P 0.21 TCGA-WB-A81N-01 9 90535520 90535520 C T SPATA31C1 RNA 0.04 TCGA-WB-A81N-01 X 1407669 1407669 G T CSF2RA Missense_Mutation p.A121S 0.37 deleterious(0) probably_damaging(0.998) TCGA-WB-A81N-01 X 153557888 153557888 C T TKTL1 Silent p.C547C 0.18 TCGA-WB-A81N-01 X 65242350 65242350 C A VSIG4 Intron 0.11 TCGA-WB-A81P-01 10 5995110 5995110 C A IL15RA Missense_Mutation p.W251L 0.08 tolerated(0.3) benign(0.003) TCGA-WB-A81P-01 11 62124546 62124546 A G ASRGL1 Missense_Mutation p.T141A 0.43 deleterious(0) probably_damaging(0.941) TCGA-WB-A81P-01 15 44673018 44673018 C T CASC4 Missense_Mutation p.H306Y 0.42 tolerated(0.05) benign(0.005) TCGA-WB-A81P-01 15 74706922 74706922 G A SEMA7A Silent p.H420H 0.06 TCGA-WB-A81P-01 16 52473705 52473705 A T TOX3 Nonsense_Mutation p.L388* 0.06 TCGA-WB-A81P-01 17 18138460 18138460 A G LLGL1 Missense_Mutation p.D373G 0.17 deleterious(0) probably_damaging(1) TCGA-WB-A81P-01 17 76510973 76510973 G A DNAH17 Silent p.A1328A 0.08 TCGA-WB-A81P-01 18 42531452 42531452 G A SETBP1 Missense_Mutation p.S716N 0.09 deleterious(0) probably_damaging(0.991) TCGA-WB-A81P-01 18 56411728 56411728 G A MALT1 Splice_Site p.X637_splice 0.28 TCGA-WB-A81P-01 18 61018282 61018282 C T KDSR Missense_Mutation p.V150M 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-WB-A81P-01 19 15290911 15290911 C T NOTCH3 Missense_Mutation p.R1100H 0.28 tolerated(0.21) benign(0.012) TCGA-WB-A81P-01 19 32843786 32843786 A G ZNF507 Missense_Mutation p.Q17R 0.30 deleterious(0.01) possibly_damaging(0.775) TCGA-WB-A81P-01 19 45797661 45797661 C T MARK4 Missense_Mutation p.R517C 0.41 deleterious(0) probably_damaging(0.973) TCGA-WB-A81P-01 1 206154047 206154047 G A FAM72A Missense_Mutation p.R149K 0.42 deleterious(0.04) benign(0.021) TCGA-WB-A81P-01 1 70904459 70904459 G C CTH Missense_Mutation p.E381Q 0.67 deleterious(0) probably_damaging(1) TCGA-WB-A81P-01 20 34099388 34099388 G A CEP250 Missense_Mutation p.S2421N 0.41 probably_damaging(0.999) TCGA-WB-A81P-01 20 50329586 50329586 G A ATP9A Missense_Mutation p.R119C 0.11 deleterious(0) probably_damaging(0.98) TCGA-WB-A81P-01 22 23915576 23915576 G A IGLL1 Silent p.Y173Y 0.29 TCGA-WB-A81P-01 22 31536351 31536351 C T PLA2G3 5'UTR 0.09 TCGA-WB-A81P-01 2 228883997 228883997 C A SPHKAP Missense_Mutation p.V525F 0.05 deleterious(0.04) benign(0.128) TCGA-WB-A81P-01 3 142281438 142281438 A G ATR Missense_Mutation p.F269S 0.34 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-WB-A81P-01 3 64184482 64184482 G A PRICKLE2 Missense_Mutation p.P41L 0.30 deleterious(0) probably_damaging(1) TCGA-WB-A81P-01 6 158438747 158438747 G A SYNJ2 Intron 0.58 TCGA-WB-A81P-01 7 98586584 98586584 G A TRRAP Missense_Mutation p.A3200T 0.24 probably_damaging(1) TCGA-WB-A81P-01 9 140693307 140693307 G C EHMT1 Missense_Mutation p.G850R 0.30 deleterious(0) probably_damaging(1) TCGA-WB-A81Q-01 11 101375232 101375232 T G TRPC6 Missense_Mutation p.E156D 0.21 tolerated(0.56) possibly_damaging(0.784) TCGA-WB-A81Q-01 11 102584138 102584138 C A MMP8 Missense_Mutation p.A449S 0.06 tolerated(0.26) benign(0.034) TCGA-WB-A81Q-01 11 17757753 17757753 G C KCNC1 Silent p.L68L 0.51 TCGA-WB-A81Q-01 11 55860831 55860831 A G OR8I2 Silent p.G16G 0.41 TCGA-WB-A81Q-01 12 116429391 116429391 A C MED13L Missense_Mutation p.F1123C 0.51 deleterious(0) unknown(0) TCGA-WB-A81Q-01 19 19105130 19105130 C A SUGP2 3'UTR 0.14 TCGA-WB-A81Q-01 19 42265395 42265395 G A CEACAM6 Silent p.A221A 0.43 TCGA-WB-A81Q-01 19 51013652 51013652 T C JOSD2 Missense_Mutation p.T13A 0.48 tolerated(0.7) benign(0) TCGA-WB-A81Q-01 19 6270667 6270667 G C MLLT1 Missense_Mutation p.P39R 0.49 deleterious(0) probably_damaging(0.965) TCGA-WB-A81Q-01 1 158644382 158644382 G A SPTA1 Missense_Mutation p.P399L 0.03 deleterious(0.02) probably_damaging(0.984) TCGA-WB-A81Q-01 1 26227488 26227488 A C STMN1 Intron 0.29 TCGA-WB-A81Q-01 2 152466570 152466570 T C NEB Missense_Mutation p.D4028G 0.37 possibly_damaging(0.723) TCGA-WB-A81Q-01 2 179463400 179463400 C T TTN Intron 0.40 TCGA-WB-A81Q-01 2 228881275 228881275 T C SPHKAP Missense_Mutation p.E1432G 0.05 deleterious(0) probably_damaging(1) TCGA-WB-A81Q-01 2 231931688 231931688 C A PSMD1 Missense_Mutation p.P125T 0.32 tolerated(0.51) benign(0.001) TCGA-WB-A81Q-01 2 238419387 238419387 G A MLPH Missense_Mutation p.R94H 0.06 tolerated(1) benign(0.003) TCGA-WB-A81Q-01 2 99256446 99256446 G A MGAT4A Missense_Mutation p.P383S 0.09 tolerated(0.76) benign(0.008) TCGA-WB-A81Q-01 3 184689502 184689502 C T VPS8 Nonsense_Mutation p.Q1128* 0.58 TCGA-WB-A81Q-01 3 47158161 47158161 T A SETD2 Missense_Mutation p.E1513V 0.04 tolerated(0.16) possibly_damaging(0.827) TCGA-WB-A81Q-01 4 7055820 7055820 G A TADA2B Missense_Mutation p.R101Q 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-WB-A81Q-01 4 77661845 77661845 C T SHROOM3 Missense_Mutation p.P840L 0.20 tolerated(0.27) benign(0) TCGA-WB-A81Q-01 5 131719958 131719958 G C SLC22A5 Missense_Mutation p.G206A 0.37 deleterious(0.05) possibly_damaging(0.781) TCGA-WB-A81Q-01 5 134705828 134705828 C A H2AFY Missense_Mutation p.E59D 0.16 deleterious(0) probably_damaging(0.998) TCGA-WB-A81Q-01 5 139889715 139889715 G A ANKHD1 Silent p.V1351V 0.12 TCGA-WB-A81Q-01 6 138726293 138726293 T C HEBP2 Silent p.Y38Y 0.46 TCGA-WB-A81Q-01 6 149718873 149718873 A T TAB2 Missense_Mutation p.R579S 0.04 deleterious(0) probably_damaging(0.994) TCGA-WB-A81R-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.37 tolerated(0.07) benign(0.069) TCGA-WB-A81R-01 11 6422898 6422898 C T APBB1 Missense_Mutation p.R468H 0.06 deleterious(0) benign(0.206) TCGA-WB-A81R-01 12 7360370 7360370 C T PEX5 Missense_Mutation p.A376V 0.11 deleterious(0.04) possibly_damaging(0.62) TCGA-WB-A81R-01 15 20644024 20644024 G A HERC2P3 RNA 0.39 TCGA-WB-A81R-01 15 74702880 74702895 GCTCCCGGGCCAGCCG - SEMA7A 3'UTR 0.46 TCGA-WB-A81R-01 16 89783090 89783090 C T VPS9D1 Intron 0.06 TCGA-WB-A81R-01 19 1453055 1453055 A G APC2 Missense_Mutation p.K19E 0.44 possibly_damaging(0.507) TCGA-WB-A81R-01 1 249141581 249141581 C T ZNF672 Silent p.H36H 0.60 TCGA-WB-A81R-01 20 23420947 23420947 G A CSTL1 Missense_Mutation p.A15T 0.37 tolerated(0.15) benign(0.016) TCGA-WB-A81R-01 20 30436706 30436706 C A FOXS1 5'Flank 0.44 TCGA-WB-A81R-01 20 37580459 37580459 G A FAM83D Missense_Mutation p.A382T 0.07 tolerated(0.36) benign(0.006) TCGA-WB-A81R-01 4 105412355 105412355 G C CXXC4 Missense_Mutation p.S202C 0.06 deleterious(0.01) possibly_damaging(0.896) TCGA-WB-A81R-01 4 123843575 123843575 G A NUDT6 Silent p.D51D 0.21 TCGA-WB-A81R-01 5 1325911 1325911 T C CLPTM1L Silent p.A367A 0.39 TCGA-WB-A81R-01 5 140557568 140557568 A G PCDHB8 5'UTR 0.19 TCGA-WB-A81R-01 5 140593648 140593648 A G PCDHB13 5'UTR 0.19 TCGA-WB-A81S-01 11 102195247 102195247 A G BIRC3 Missense_Mutation p.I3V 0.28 tolerated(0.33) benign(0.005) TCGA-WB-A81S-01 11 118376687 118376687 A C KMT2A Silent p.S3360S 0.32 TCGA-WB-A81S-01 13 39544453 39544453 C T STOML3 Missense_Mutation p.A129T 0.04 tolerated(0.05) probably_damaging(0.924) TCGA-WB-A81S-01 14 106090814 106090814 C G IGHG4 Nonstop_Mutation p.*328Sext*35 0.17 TCGA-WB-A81S-01 15 90335438 90335438 C T ANPEP Silent p.K827K 0.20 TCGA-WB-A81S-01 16 81253679 81253679 C A PKD1L2 Silent p.T99T 0.23 TCGA-WB-A81S-01 19 37904427 37904427 C T ZNF569 Missense_Mutation p.G378D 0.29 deleterious(0) probably_damaging(1) TCGA-WB-A81S-01 19 46120071 46120071 T C EML2 Missense_Mutation p.I656V 0.15 tolerated(0.78) benign(0.002) TCGA-WB-A81S-01 1 22167752 22167752 C T HSPG2 Missense_Mutation p.E3119K 0.13 benign(0.021) TCGA-WB-A81S-01 2 99695278 99695278 T A TSGA10 Splice_Site p.X243_splice 0.19 TCGA-WB-A81S-01 3 49028318 49028318 G A P4HTM Missense_Mutation p.R136Q 0.24 deleterious(0.01) possibly_damaging(0.748) TCGA-WB-A81S-01 5 71492290 71492290 G A MAP1B Silent p.P1036P 0.05 TCGA-WB-A81S-01 6 112452193 112452193 G A LAMA4 Silent p.V1315V 0.19 TCGA-WB-A81S-01 7 102912314 102912314 T C DPY19L2P2 Intron 0.15 TCGA-WB-A81S-01 9 138393756 138393756 T G MRPS2 Missense_Mutation p.F79C 0.14 deleterious(0) probably_damaging(0.971) TCGA-WB-A81T-01 10 61829127 61829127 G A ANK3 Missense_Mutation p.H3838Y 0.29 probably_damaging(0.932) TCGA-WB-A81T-01 10 62039370 62039370 C T ANK3 Missense_Mutation p.A48T 0.34 probably_damaging(0.999) TCGA-WB-A81T-01 10 94223489 94223489 T A IDE Missense_Mutation p.R920S 0.07 deleterious(0.01) probably_damaging(0.937) TCGA-WB-A81T-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.43 tolerated(0.07) benign(0.069) TCGA-WB-A81T-01 11 66453288 66453288 C T SPTBN2 3'UTR 0.40 TCGA-WB-A81T-01 11 73388973 73388973 T C RAB6A Silent p.Q199Q 0.05 TCGA-WB-A81T-01 14 91639743 91639743 C T C14orf159 Silent p.L189L 0.34 TCGA-WB-A81T-01 15 43697419 43697419 C T TUBGCP4 3'UTR 0.33 TCGA-WB-A81T-01 16 67919981 67919981 C A NRN1L Missense_Mutation p.P106H 0.17 tolerated(0.05) probably_damaging(0.973) TCGA-WB-A81T-01 17 31260234 31260234 G A TMEM98 Silent p.E58E 0.34 TCGA-WB-A81T-01 19 4446365 4446365 C A UBXN6 Missense_Mutation p.M322I 0.33 deleterious(0) probably_damaging(0.928) TCGA-WB-A81T-01 1 28320051 28320051 T A EYA3 Missense_Mutation p.D388V 0.53 deleterious(0) probably_damaging(0.999) TCGA-WB-A81T-01 2 201686894 201686894 G T BZW1 Missense_Mutation p.G450V 0.17 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-WB-A81T-01 3 125032328 125032328 G A ZNF148 Missense_Mutation p.P53S 0.05 tolerated(0.16) benign(0.05) TCGA-WB-A81T-01 6 13794127 13794127 A G MCUR1 Missense_Mutation p.L303S 0.23 tolerated(0.06) benign(0.108) TCGA-WB-A81T-01 6 50683256 50683256 T A TFAP2D Missense_Mutation p.M156K 0.47 deleterious(0.01) benign(0.003) TCGA-WB-A81T-01 6 89926980 89926980 G A GABRR1 Missense_Mutation p.A21V 0.08 tolerated_low_confidence(0.15) benign(0.001) TCGA-WB-A81T-01 7 141730215 141730215 T C MGAM Silent p.Y425Y 0.49 TCGA-WB-A81T-01 8 11995945 11995945 G A USP17L2 Silent p.L109L 0.27 TCGA-WB-A81T-01 8 17123483 17123483 A G VPS37A Missense_Mutation p.I65V 0.12 tolerated(0.27) benign(0.015) TCGA-WB-A81T-01 9 124530814 124530814 C T DAB2IP Missense_Mutation p.L573F 0.67 tolerated(0.23) benign(0.183) TCGA-WB-A81T-01 X 65253674 65253674 T C VSIG4 Splice_Site p.X19_splice 0.56 TCGA-WB-A81V-01 11 4567013 4567013 A G OR52M1 Missense_Mutation p.N198S 0.06 tolerated(1) benign(0.044) TCGA-WB-A81V-01 12 27933767 27933767 C T KLHL42 Silent p.L168L 0.44 TCGA-WB-A81V-01 17 29576062 29576077 GTTCTTCCATGCCATC - NF1 Frame_Shift_Del p.F1346Sfs*27 0.30 TCGA-WB-A81V-01 17 29657338 29657338 T A NF1 Nonsense_Mutation p.C1878* 0.36 TCGA-WB-A81V-01 17 48650206 48650206 C A CACNA1G Silent p.A346A 0.25 TCGA-WB-A81V-01 19 10132233 10132233 G A RDH8 Silent p.S268S 0.08 TCGA-WB-A81V-01 19 12638192 12638192 T C ZNF564 Missense_Mutation p.M244V 0.17 tolerated(0.09) benign(0.115) TCGA-WB-A81V-01 19 39026679 39026679 G C RYR1 Missense_Mutation p.E3853D 0.44 benign(0.001) TCGA-WB-A81V-01 1 145706683 145706683 C T CD160 Intron 0.08 TCGA-WB-A81V-01 1 176675578 176675578 A G PAPPA2 Missense_Mutation p.N1150S 0.44 deleterious(0.05) benign(0.035) TCGA-WB-A81V-01 1 202700150 202700150 G A KDM5B Silent p.L1355L 0.07 TCGA-WB-A81V-01 20 31825987 31825987 C T BPIFA1 Missense_Mutation p.T96M 0.31 deleterious(0) possibly_damaging(0.73) TCGA-WB-A81V-01 2 217124370 217124370 G A MARCH4 Missense_Mutation p.R300C 0.38 deleterious(0) possibly_damaging(0.786) TCGA-WB-A81V-01 3 15755112 15755113 - T ANKRD28 Frame_Shift_Ins p.T341Nfs*12 0.13 TCGA-WB-A81V-01 8 56686177 56686177 A C TGS1 5'UTR 0.41 TCGA-WB-A81V-01 9 130197489 130197489 C T ZNF79 Silent p.L76L 0.11 TCGA-WB-A81V-01 9 20933055 20933055 G A FOCAD Silent p.S1120S 0.15 TCGA-WB-A81V-01 X 151869868 151869868 C T MAGEA6 Silent p.Y186Y 0.06 TCGA-WB-A81W-01 10 127693555 127693555 G A FANK1 Silent p.L214L 0.06 TCGA-WB-A81W-01 10 18828544 18828544 G A CACNB2 Missense_Mutation p.R625H 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.893) TCGA-WB-A81W-01 10 68687983 68687983 G C LRRTM3 Missense_Mutation p.V437L 0.07 deleterious(0) probably_damaging(0.927) TCGA-WB-A81W-01 12 62749120 62749120 A G USP15 Missense_Mutation p.N260S 0.21 tolerated(0.84) benign(0) TCGA-WB-A81W-01 14 63246574 63246574 G A KCNH5 Missense_Mutation p.R631W 0.06 deleterious(0) probably_damaging(1) TCGA-WB-A81W-01 14 63246575 63246575 G A KCNH5 Silent p.V630V 0.06 TCGA-WB-A81W-01 16 23400369 23400369 G A COG7 Missense_Mutation p.P729S 0.06 tolerated(0.18) benign(0.284) TCGA-WB-A81W-01 17 7193313 7193313 C T YBX2 Silent p.P274P 0.17 TCGA-WB-A81W-01 19 11833345 11833345 T C ZNF823 Missense_Mutation p.K335R 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-WB-A81W-01 19 11917376 11917376 G A ZNF491 Missense_Mutation p.R203H 0.31 tolerated(0.11) benign(0.009) TCGA-WB-A81W-01 1 3327970 3327970 C T PRDM16 Silent p.Y403Y 0.44 TCGA-WB-A81W-01 20 54970613 54970613 A T CSTF1 Missense_Mutation p.Y2F 0.09 tolerated_low_confidence(0.19) benign(0) TCGA-WB-A81W-01 20 62626273 62626273 A G PRPF6 Missense_Mutation p.K148R 0.08 tolerated(0.18) benign(0.405) TCGA-WB-A81W-01 21 10998293 10998293 G T TPTE RNA 0.18 TCGA-WB-A81W-01 21 10998294 10998294 G T TPTE RNA 0.20 TCGA-WB-A81W-01 3 18391140 18391160 TGCTGCTGCTGCTGTTGCTGT - SATB1 In_Frame_Del p.Q633_Q639del 0.36 TCGA-WB-A81W-01 4 91229914 91229914 A G CCSER1 Missense_Mutation p.D160G 0.38 deleterious(0) possibly_damaging(0.773) TCGA-WB-A81W-01 5 176523689 176523689 G A FGFR4 Silent p.S700S 0.19 TCGA-WB-A81W-01 5 176833050 176833050 G T F12 Missense_Mutation p.T43N 0.33 tolerated(0.24) benign(0.002) TCGA-WB-A81W-01 7 2644558 2644558 G A IQCE Missense_Mutation p.R559Q 0.38 deleterious(0.02) possibly_damaging(0.787) TCGA-WB-A81W-01 7 91711856 91711856 T C AKAP9 Silent p.H2680H 0.37 TCGA-WB-A81W-01 8 123965941 123965941 T G ZHX2 Missense_Mutation p.Y731D 0.15 tolerated(0.06) benign(0.021) TCGA-WB-A820-01 19 3382111 3382111 G A NFIC Silent p.E144E 0.25 TCGA-WB-A820-01 19 4704312 4704312 G A DPP9 Missense_Mutation p.T144M 0.32 tolerated(0.07) probably_damaging(0.953) TCGA-WB-A820-01 19 9060544 9060544 G A MUC16 Missense_Mutation p.P8968S 0.09 unknown(0) TCGA-WB-A820-01 1 101339869 101339869 A G EXTL2 Missense_Mutation p.Y208H 0.06 tolerated(0.08) probably_damaging(0.999) TCGA-WB-A820-01 1 214537876 214537876 G C PTPN14 Missense_Mutation p.I1138M 0.19 deleterious(0) probably_damaging(0.957) TCGA-WB-A820-01 22 37211274 37211274 C T PVALB Missense_Mutation p.D23N 0.38 tolerated(0.07) possibly_damaging(0.619) TCGA-WB-A820-01 22 38201891 38201891 A G H1F0 Missense_Mutation p.I114V 0.25 tolerated(1) unknown(0) TCGA-WB-A820-01 2 138413157 138413157 C T THSD7B Silent p.V1347V 0.40 TCGA-WB-A820-01 2 37594434 37594434 G A QPCT Silent p.E202E 0.22 TCGA-WB-A820-01 3 10318140 10318140 A G TATDN2 Silent p.K643K 0.04 TCGA-WB-A820-01 5 180622167 180622167 C T TRIM7 Silent p.%3D 0.08 TCGA-WB-A820-01 6 146262866 146262866 G T SHPRH Missense_Mutation p.L795I 0.11 deleterious(0.04) benign(0.392) TCGA-WB-A820-01 6 26377152 26377152 C T BTN3A2 3'UTR 0.05 TCGA-WB-A820-01 6 43034200 43034200 G A KLC4 Missense_Mutation p.R261H 0.06 deleterious(0.01) benign(0.386) TCGA-WB-A820-01 7 33136944 33136944 G A RP9 Missense_Mutation p.T115M 0.33 deleterious(0) benign(0.154) TCGA-WB-A820-01 9 140001177 140001177 C A MAN1B1 Silent p.V494V 0.11 TCGA-WB-A820-01 X 1584321 1584321 C T P2RY8 3'UTR 0.28 TCGA-WB-A821-01 10 74673076 74673076 G A OIT3 Silent p.L267L 0.05 TCGA-WB-A821-01 11 614014 614014 G C IRF7 Missense_Mutation p.L248V 0.22 tolerated(0.36) benign(0.015) TCGA-WB-A821-01 14 21928528 21928528 G A RAB2B 3'UTR 0.47 TCGA-WB-A821-01 16 14676088 14676088 T C PARN Missense_Mutation p.Y381C 0.06 deleterious(0.02) probably_damaging(1) TCGA-WB-A821-01 17 17699978 17699978 T G RAI1 Missense_Mutation p.L1239R 0.16 tolerated(0.15) probably_damaging(0.999) TCGA-WB-A821-01 17 20224859 20224859 G A AC004702.2 Intron 0.26 TCGA-WB-A821-01 17 26882066 26882066 T C PIGS Missense_Mutation p.I399V 0.33 tolerated(0.43) benign(0.163) TCGA-WB-A821-01 17 42501775 42501775 T C GPATCH8 Missense_Mutation p.Y145C 0.11 deleterious(0) probably_damaging(1) TCGA-WB-A821-01 17 6902684 6902684 G A ALOX12 Missense_Mutation p.A236T 0.06 tolerated(0.13) benign(0.03) TCGA-WB-A821-01 18 13116474 13116474 T C CEP192 Missense_Mutation p.L2463P 0.15 deleterious(0) probably_damaging(0.989) TCGA-WB-A821-01 19 48976617 48976617 A G CYTH2 Missense_Mutation p.N139S 0.08 tolerated(0.2) benign(0.01) TCGA-WB-A821-01 19 808429 808429 C T PTBP1 Missense_Mutation p.A408V 0.22 deleterious(0) possibly_damaging(0.567) TCGA-WB-A821-01 1 13448307 13448307 A G PRAMEF13 Missense_Mutation p.S390P 0.10 deleterious(0.01) probably_damaging(0.956) TCGA-WB-A821-01 1 152648850 152648850 A C LCE2C 3'UTR 0.08 TCGA-WB-A821-01 1 7886649 7886649 G A PER3 Silent p.A681A 0.07 TCGA-WB-A821-01 20 60581703 60581703 C T TAF4 Missense_Mutation p.V696M 0.14 probably_damaging(0.987) TCGA-WB-A821-01 20 60701439 60701439 G T LSM14B Missense_Mutation p.G124V 0.17 deleterious(0) benign(0.034) TCGA-WB-A821-01 22 36690155 36690155 T C MYH9 Missense_Mutation p.K1274E 0.36 benign(0.142) TCGA-WB-A821-01 2 229890554 229890554 C A PID1 Missense_Mutation p.V181F 0.05 deleterious(0) possibly_damaging(0.494) TCGA-WB-A821-01 2 46607400 46607400 C T EPAS1 Missense_Mutation p.A530V 0.52 deleterious(0) probably_damaging(1) TCGA-WB-A821-01 3 119451227 119451227 T G MAATS1 Missense_Mutation p.S369A 0.23 deleterious(0) probably_damaging(0.987) TCGA-WB-A821-01 3 48419816 48419816 A G FBXW12 Missense_Mutation p.I139V 0.10 tolerated(0.08) benign(0.141) TCGA-WB-A821-01 3 56468448 56468448 C G ERC2 Missense_Mutation p.L196F 0.26 deleterious(0.01) possibly_damaging(0.905) TCGA-WB-A821-01 3 74383970 74383970 C A CNTN3 Silent p.L528L 0.07 TCGA-WB-A821-01 4 173942682 173942682 G A GALNTL6 Missense_Mutation p.R515Q 0.18 deleterious(0.03) possibly_damaging(0.716) TCGA-WB-A821-01 5 13721122 13721122 T C DNAH5 Missense_Mutation p.Q4089R 0.06 benign(0.003) TCGA-WB-A821-01 7 103969248 103969248 T C LHFPL3 Silent p.A7A 0.17 TCGA-WB-A821-01 7 82389988 82389988 T C PCLO Silent p.R5085R 0.49 TCGA-WB-A821-01 8 103855864 103855864 T G AZIN1 Missense_Mutation p.D6A 0.17 deleterious(0.04) benign(0.309) TCGA-WB-A821-01 8 82606174 82606174 G A SLC10A5 Missense_Mutation p.A345V 0.06 tolerated(1) benign(0.007) TCGA-WB-A821-01 9 36249220 36249220 C T GNE Missense_Mutation p.V76I 0.08 deleterious(0.03) probably_damaging(0.959) TCGA-WB-A821-01 X 30873680 30873680 C A TAB3 Splice_Site p.X35_splice 0.08 TCGA-WB-A822-01 12 20868177 20868177 C T SLCO1C1 Silent p.L212L 0.06 TCGA-WB-A822-01 12 49937738 49937741 GGGC A KCNH3 In_Frame_Del p.G289del 0.20 TCGA-WB-A822-01 14 106311819 106311819 T C IGHD Missense_Mutation p.M65V 0.24 tolerated_low_confidence(0.27) benign(0) TCGA-WB-A822-01 14 94067098 94067098 G A UNC79 Missense_Mutation p.E1009K 0.06 tolerated(0.07) probably_damaging(0.996) TCGA-WB-A822-01 17 73894960 73894960 T G MRPL38 Missense_Mutation p.S372R 0.50 tolerated(0.11) probably_damaging(0.927) TCGA-WB-A822-01 2 1652159 1652159 G A PXDN Silent p.P1131P 0.35 TCGA-WB-A822-01 3 55052296 55052296 G A CACNA2D3 Missense_Mutation p.R980H 0.17 tolerated(0.11) probably_damaging(0.994) TCGA-WB-A822-01 9 138657490 138657490 G A KCNT1 Silent p.L407L 0.29 TCGA-XG-A823-01 11 125359671 125359671 C T FEZ1 Translation_Start_Site p.M1? 0.29 deleterious(0) probably_damaging(0.914) TCGA-XG-A823-01 12 49418672 49418672 A C KMT2D Missense_Mutation p.L5281R 0.19 unknown(0) TCGA-XG-A823-01 12 55688981 55688981 G C OR6C6 Silent p.L12L 0.16 TCGA-XG-A823-01 14 45650703 45650703 A G FANCM Silent p.K1431K 0.22 TCGA-XG-A823-01 17 44248901 44248901 C T KANSL1 Silent p.G203G 0.20 TCGA-XG-A823-01 17 54559863 54559863 C T ANKFN1 Silent p.L749L 0.26 TCGA-XG-A823-01 1 157665168 157665168 G T FCRL3 Missense_Mutation p.D454E 0.05 tolerated(0.06) probably_damaging(0.967) TCGA-XG-A823-01 1 159778167 159778167 T C FCRL6 Silent p.S84S 0.20 TCGA-XG-A823-01 3 156421292 156421292 G A TIPARP Missense_Mutation p.V443I 0.07 tolerated(0.51) benign(0.001) TCGA-XG-A823-01 6 109315808 109315808 C G SESN1 Missense_Mutation p.S326T 0.15 tolerated(0.65) benign(0.002) TCGA-XG-A823-01 X 129759353 129759353 C G ENOX2 Missense_Mutation p.G590R 0.06 deleterious(0) probably_damaging(1) TCGA-XG-A823-01 X 151560738 151560738 C T GABRA3 Intron 0.15